cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/ryc-xfy-jxm
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5mm-alq-wh0
title: Muscardinus Kaup, 1829

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gd5-qe3-77c
title: Biflustra d'Orbigny, 1852

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5eq-fq3-5kd
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p9l-pft-38g
title: Synnotum aegyptiacum (Audouin, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gpd-w8f-xbp
title: Membranipora de Blainville, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/shq-4v0-2dv
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1ya-yzl-5wg
title: Plesiocleidochasma porcellanum (Busk, 1860)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hh1-s0w-ecb
title: Conopeum Gray, 1848

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ekh-k9d-67g
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lj7-wv2-l03
title: Celleporina caliciformis (Lamouroux, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ph1-fbw-pc5
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bvf-yk3-6q8
title: Metrarabdotos Canu, 1914

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e4q-1xz-mrb
title: Electra pilosa (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jcd-8c7-c96
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lg2-8mx-3d4
title: Cigclisula turrita (Smitt, 1873)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2zc-s7k-88l
title: Myodes Pallas, 1811

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c34-see-va7
title: †Tofanella decussata (Münster, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gd0-ktd-jzc
title: Gen. indet. sp. indet.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mf3-g17-c6a
title: Sorex (Sorex) minutus Linnaeus, 1766

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8h7-k9c-z5b
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3xn-mf5-0hj
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n6l-r82-363
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y21-sdw-c1k
title: Magnoliopsida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29944590.v1
title: Large Language Models Use in Dry Eye Disease: Perplexity AI versus ChatGPT4

description: To compare the utility of two large language models (LLM) in dry eye disease (DED) clinics and research. Trained ocular surface experts generated 12 prompts for queries commonly asked by DED patients (<i>n</i> = 10 questions) and research ideas for DED (<i>n</i> = 2). Responses of two LLM models, ChatGPT4 and Perplexity AI, were graded by them using a standardized grading system (1 = needs improvement, 2 = fair, 3 = good, and 4 = excellent) evaluating the response accuracy, compassion, comprehensiveness, professionalism, humanness, and overall quality of each response. The mean scores of the grades from each expert for each response were compared. The 10 clinical DED prompts received similar overall mean quality grades for the responses with ChatGPT (mean grade score = 2.6) and Perplexity AI (2.7). The mean grade scores for the response characteristics (accuracy, compassion, professionalism, humanness, and succinctness) varied between the experts for each question (range 2.2 to 3.1 for ChatGPT and 2.3 to 3.0 for Perplexity AI). ChatGPT4 generated DED-related research ideas better than Perplexity AI (mean 3.4 vs. 2.6). The source citations for responses by Perplexity AI were from web pages and were not evidence-based. There was slight or poor agreement between the reviewers’ ratings for response characteristics generated by both LLMs. Perplexity AI and ChatGPT performed similarly for patient-related queries on DED and could have a role in patient education. These LLMs could have a role in DED clinics for patient counseling but require supervision. The LLMs are not ready to generate dry-eye research ideas or perform literature searches for DED.
DOI: 10.3535/2xz-qzq-nhd
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kkx-yzr-a9l
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9m6-9g0-c6q
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z8t-eel-y7v
title: Galemys Kaup, 1829

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29944590
title: Large Language Models Use in Dry Eye Disease: Perplexity AI versus ChatGPT4

description: To compare the utility of two large language models (LLM) in dry eye disease (DED) clinics and research. Trained ocular surface experts generated 12 prompts for queries commonly asked by DED patients (<i>n</i> = 10 questions) and research ideas for DED (<i>n</i> = 2). Responses of two LLM models, ChatGPT4 and Perplexity AI, were graded by them using a standardized grading system (1 = needs improvement, 2 = fair, 3 = good, and 4 = excellent) evaluating the response accuracy, compassion, comprehensiveness, professionalism, humanness, and overall quality of each response. The mean scores of the grades from each expert for each response were compared. The 10 clinical DED prompts received similar overall mean quality grades for the responses with ChatGPT (mean grade score = 2.6) and Perplexity AI (2.7). The mean grade scores for the response characteristics (accuracy, compassion, professionalism, humanness, and succinctness) varied between the experts for each question (range 2.2 to 3.1 for ChatGPT and 2.3 to 3.0 for Perplexity AI). ChatGPT4 generated DED-related research ideas better than Perplexity AI (mean 3.4 vs. 2.6). The source citations for responses by Perplexity AI were from web pages and were not evidence-based. There was slight or poor agreement between the reviewers’ ratings for response characteristics generated by both LLMs. Perplexity AI and ChatGPT performed similarly for patient-related queries on DED and could have a role in patient education. These LLMs could have a role in DED clinics for patient counseling but require supervision. The LLMs are not ready to generate dry-eye research ideas or perform literature searches for DED.
DOI: 10.3535/64q-9w9-n4k
title: †Volviflustrellaria Brydone, 1936

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eat-tny-lxe
title: Parasmittina Osburn, 1952

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0zm-26f-bkk
title: Canda caraibica Levinsen, 1909

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4px-t57-ygr
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ayg-26v-k06
title: Lima Bruguière, 1797

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1ds-6rp-6gy
title: Sideroxylon L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6qh-v6y-9kc
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kk3-pj6-byv
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wm6-srf-gxq
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t6s-sgn-fb7
title: Crisia Lamouroux, 1812

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tb1-xw8-x7y
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nzx-qg5-mwk
title: Myodes Pallas, 1811

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lcc-vpg-etl
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qxc-ydt-9q1
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.14288/1.0397639
title: Data from: The reciprocal relationship between competition and intraspecific trait variation

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Trait differences among plants are expected to influence the outcome of competition; competition should be strongest between similar species (or individuals) under limiting similarity, and between dissimilar species within competitive hierarchies. These hypotheses are often used to infer competitive dynamics from trait patterns within communities. However, plant traits are frequently plastic in response to competition. This variation is poorly accounted for in trait-based studies of competition and community assembly. To explore the relationship between trait responses and competitive outcomes, we grew 15 species alone, in monoculture and in mixture. We measured traits relating to leaf and root tissue morphology as well as biomass allocation and related competition-induced changes in these traits to intra- and interspecific competition using multi-model inference. Additionally, we tested how traits from different competitive environments influenced potential community assembly inferences. The competitive environment had large effects on species’ traits, although many effects were species specific. Differences among species in how competition affected trait expression were linked to both intra- and interspecific competition, frequently affecting competitive hierarchies. Intraspecific competition was lower for species that limited competition-induced increases in root allocation and had less variability in this trait overall. Interspecific competition was lower for species with larger leaves and lower specific leaf area than their neighbours. Switching to more stress-tolerant strategies by increasing root diameter and leaf tissue density also reduced competition. However, dissimilarity in root tissue density also minimized competition, consistent with limiting similarity affecting competitive outcomes. Moreover, changes in these traits were linked to changes in functional diversity, suggesting that competition affects functional diversity by affecting trait expression. Synthesis. Both trait hierarchies and trait dissimilarity affect the outcome of competition by acting on different traits, although competition-induced changes in trait expression can alter competitive outcomes. Moreover, the magnitude of these trait changes suggests that the source environment where plant traits are collected can affect the inferences drawn from trait patterns within communities. Combined, our results suggest that considering the effect of competition on trait expression is critical to understanding the relationship between traits and community assembly.
DOI: 10.14288/1.0397640
title: Data from: Rapid evolution accelerates plant population spread in fragmented experimental landscapes

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Predicting the speed of biological invasions and native species migrations requires an understanding of the ecological and evolutionary dynamics of spreading populations. Theory predicts that evolution can accelerate species’ spread velocity, but how landscape patchiness—an important control over traits under selection—influences this process is unknown. We manipulated the response to selection in populations of a model plant species spreading through replicated experimental landscapes of varying patchiness. After six generations of change, evolving populations spread 11% farther than nonevolving populations in continuously favorable landscapes and 200% farther in the most fragmented landscapes. The greater effect of evolution on spread in patchier landscapes was consistent with the evolution of dispersal and competitive ability. Accounting for evolutionary change may be critical when predicting the velocity of range expansions.
DOI: 10.14288/1.0397641
title: Data from: Evaluation of rockfish conservation area networks in the United States and Canada relative to the dispersal distance for black rockfish (Sebastes melanops)

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Marine reserves networks are implemented as a way to mitigate the impact of fishing on marine ecosystems. Theory suggests that a reserve network will function synergistically when connected by dispersal, but the scale of dispersal is often unknown. On the Pacific coast of the United States and Canada, both countries have recently implemented a number of rockfish conservation areas (RCAs) to protect exploited rockfish species, but no study has evaluated the connectivity within networks in each country or between the two countries. We used isolation-by-distance theory to estimate the scale of dispersal from microsatellite data in the black rockfish, Sebastes melanops, and compared this estimate with the distance between RCAs that would protect this species. Within each country, we found that the distance between RCAs was generally within the confidence intervals of mean dispersal per generation. The distance between these two RCA networks, however, was greater than the average dispersal per generation. The data were also consistent with a genetic break between southern Oregon and central Oregon. We discuss whether additional nearshore RCAs in southern Oregon and Washington would help promote connectivity between RCA's for shallow-water rockfishes.
DOI: 10.14288/1.0397642
title: Data from: Double decomposition: decomposing the variance in subcomponents of male extra-pair reproductive success

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;1. Extra-pair reproductive success (EPRS) is a key component of male fitness in socially monogamous systems and could cause selection on female extra-pair reproduction if extra-pair offspring (EPO) inherit high value for EPRS from their successful extra-pair fathers. However, EPRS is itself a composite trait that can be fully decomposed into subcomponents of variation, each of which can be further decomposed into genetic and environmental variances. However, such decompositions have not been implemented in wild populations, impeding evolutionary inference. 2. We first show that EPRS can be decomposed into the product of three life-history subcomponents: the number of broods available to a focal male to sire EPO, the male's probability of siring an EPO in an available brood and the number of offspring in available broods. This decomposition of EPRS facilitates estimation from field data because all subcomponents can be quantified from paternity data without need to quantify extra-pair matings. Our decomposition also highlights that the number of available broods, and hence population structure and demography, might contribute substantially to variance in male EPRS and fitness. 3. We then used 20 years of complete genetic paternity and pedigree data from wild song sparrows (Melospiza melodia) to partition variance in each of the three subcomponents of EPRS, and thereby estimate their additive genetic variance and heritability conditioned on effects of male coefficient of inbreeding, age and social status. 4. All three subcomponents of EPRS showed some degree of within-male repeatability, reflecting combined permanent environmental and genetic effects. Number of available broods and offspring per brood showed low additive genetic variances. The estimated additive genetic variance in extra-pair siring probability was larger, although the 95% credible interval still converged towards zero. Siring probability also showed inbreeding depression and increased with male age, while the numbers of available broods and offspring per brood did not. 5. Our results indicate that the probability that a male will sire an EPO in an available brood is the primary source of genetic variation in male EPRS, implying that the evolution of female extra-pair reproduction could be facilitated by genetic covariance with this subcomponent of EPRS.
DOI: 10.14288/1.0397643
title: Data from: Previously unknown evolutionary groups dominate the ssDNA gokushoviruses in oxic and anoxic waters of a coastal marine environment

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Metagenomic studies have revealed that ssDNA phages from the family Microviridae subfamily Gokushovirinae are widespread in aquatic ecosystems. It is hypothesized that gokushoviruses occupy specialized niches, resulting in differences among genotypes traversing water column gradients. Here, we use degenerate primers that amplify a fragment of the gene encoding the major capsid protein to examine the diversity of gokushoviruses in Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island, British Columbia. Amplicon sequencing of samples from the mixed oxic surface (10 m) and deeper anoxic (200 m) layers indicated a diverse assemblage of gokushoviruses, with greater richness at 10 m than 200 m. A comparison of amplicon sequences with sequences selected on the basis of RFLP patterns from eight surface samples collected over a one-year period revealed that gokushovirus diversity was higher in spring and summer during stratification, and lower in fall and winter after deep-water renewal, consistent with seasonal variability within gokushovirus populations. Phylogenetic analysis of clustered amplicons revealed at least five new phylogenetic clades of previously unknown sequences, with the most abundant group associated with viruses that infect SUP05, a ubiquitous and abundant member of marine oxygen minimum zones. Our results provide persuasive evidence that, while specific gokushovirus genotypes may have a narrow host range, hosts for gokushoviruses in Saanich Inlet consist of a wide range of bacterial taxa, including SUP05, a taxonomic clade of gamma proteobacterial sulfur oxidizers. Members of SUP05 are abundant in Saanich Inlet and involved in carbon, nitrogen, and sulfur cycling along the redoxline; thus, gokushoviruses are likely important mortality agents of these bacteria and have consequent influences on biogeochemical cycling in this system.
DOI: 10.14288/1.0397644
title: Data from: Jerzego, a new hisponine jumping spider from Borneo (Araneae: Salticidae)

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;A new genus and species of hisponine jumping spider from Sarawak, Jerzego corticicola Maddison sp. nov. are described, representing one of the few hisponine jumping spiders known from Asia, and the only whose male is known. Although similar to the primarily-Madagascan genus Hispo in having an elongate and flat body, sequences of 28s and 16sND1 genes indicate that Jerzego is most closely related to Massagris and Tomomingi, a result consistent with morphology. Females of Jerzego and other genera of Hisponinae were found to have an unusual double copulatory duct, which appears to be a synapomorphy of the subfamily. Two species are transferred from Hispo, Jerzego bipartitus (Simon) comb. nov. and Jerzego alboguttatus (Simon) comb. nov. Diagnostic illustrations and photographs of living spiders are provided.
DOI: 10.14288/1.0397645
title: Data from: Phylogeography and population history of Leopardus guigna, the smallest American felid

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;The guigna (Leopardus guigna) is the smallest and most-restricted New World cat species, inhabiting only around 160,000 km2 of temperate rain forests in southern South America and is currently threatened by habitat loss, fragmentation and human persecution. We investigated phylogeographic patterns of genetic diversity, demographic history and barriers to gene flow with 116 individuals sampled across the species geographic range by analyzing 1,798 base pairs of the mtDNA (496 bp HVSI region, 720 bp NADH-5 gene, 364 bp from 16S gene and 218 bp from ATP-8 gene) and 15 microsatellite loci. Mitochondrial DNA data revealed a clear phylogeographic pattern with moderate separation between northern and southern Chilean populations supporting recognized subspecific partitions based on morphology. A recent demographic expansion was inferred for the southern-most group (San Rafael Lake), presumably due to the complete coverage of this area during the last glacial period, 28000–16000 years BP. Geographical barriers such as the Andes Mountains and the Chacao Channel have partially restricted historic and more-recent gene flow and the Chiloé Island population has diverged genetically since being separated from the mainland 7000 years BP. This is the first study of the genetic structure of this threatened species throughout its whole geographic range.
DOI: 10.6073/pasta/9bd66c1571a9d695e35a2bb7a836bfa5
title: Standard body length of Euphausia superba collected with a 2-m, 700-um net towed from surface to 120 m, collected aboard Palmer LTER annual cruises off the coast of the Western Antarctic Peninsula, 2009 - 2024.

description: Antarctic krill, Euphausia superba, are a critical food-web link between phytoplankton primary production and higher trophic levels, such as whales, penguins, and seals. Krill standard length was measured from LTER zooplankton tows along the western Antarctic Peninsula. Annual cruises take place between late December to early February, except for the NBP21-13 cruise, which was November and December. Length data provides estimates of age-class abundance and recruitment. Climate-induced changes in krill recruitment are an important consideration in the management and modelling of krill populations.