cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15095080
title: Additional file 6 of Successful treatment of severe sepsis and diarrhea after vagotomy utilizing fecal microbiota transplantation: a case report

description: Variations in phylogenetic distribution of 16S rDNA sequences following fecal infusion. The diagrammatic phylogenetic tree presents a summary of the rRNA sequences obtained from DGGE bands in this study. Phyla are named to the left of the tree, and lower taxonomic levels are given to the right. The number in the clade is designated as the relative proportion (%) in the whole fecal microbiota.
DOI: 10.6084/m9.figshare.15095080.v1
title: Additional file 6 of Successful treatment of severe sepsis and diarrhea after vagotomy utilizing fecal microbiota transplantation: a case report

description: Variations in phylogenetic distribution of 16S rDNA sequences following fecal infusion. The diagrammatic phylogenetic tree presents a summary of the rRNA sequences obtained from DGGE bands in this study. Phyla are named to the left of the tree, and lower taxonomic levels are given to the right. The number in the clade is designated as the relative proportion (%) in the whole fecal microbiota.
DOI: 10.5281/zenodo.10683367
title: The Spectral Parameters Toolkit (sptk): Example Dataset

description: This Example Dataset contains the instrument file and spectral library to be used when working through the example notebooks of the Spectral Parameters Toolkit (sptk).

sptk is a Python package for investigating the ability of a multispectral imaging system to identify distinct materials and material groups through differences in reflectance spectra. Instructions for installing sptk and running the example notebooks can be found at the sptk repository (doi:10.5281/zenodo.10692531).

Content



Example instrument data file: example_instrument.csv



This must be placed in the /sptk/data/instrument directory of your local installation of sptk.



Example spectral library directory: example_spectral_library/



This must be placed in the /sptk/data/spectral_library directory of your local installation of sptk.




Data Sources

The example instrument dataset has been synthetically generated for the example notebooks, and does not intentionally represent any real multispectral imaging system.

The example spectral library dataset was compiled using the Western Washington University Visible-Infrared Spectral Browser (ViSOR, doi:10.5281/zenodo.6604832). Instructions for accessing the data and formatting it for sptk are provided in the material_collection_example.ipynb notebook. All entries of the dataset were sourced (via ViSOR) from the Planetary Spectroscopy Facility, University of Winnipeg.

If you use this dataset in any aspect of your research, in addition to citing this repository (by DOI), please acknowledge both ViSOR (by linking to the ViSOR webpage, and citing the DOI) and the Planetary Spectroscopy Facility, University of Winnipeg.
DOI: 10.5281/zenodo.10697759
title: Dataset related to article: CORRIGENDUM: PMCA-BASED DETECTION OF PRIONS IN THE OLFACTORY MUCOSA OF PATIENTS WITH SPORADIC CREUTZFELDT–JAKOB DISEASE

description: Ref 1034 -Figure 5 - Quantitative PMCA (qPMCA) for estimating PrPres concentration in OM samples of sCJD patients
DOI: 10.5281/zenodo.10697760
title: Dataset related to article: CORRIGENDUM: PMCA-BASED DETECTION OF PRIONS IN THE OLFACTORY MUCOSA OF PATIENTS WITH SPORADIC CREUTZFELDT–JAKOB DISEASE

description: Ref 1034 -Figure 5 - Quantitative PMCA (qPMCA) for estimating PrPres concentration in OM samples of sCJD patients
DOI: 10.6084/m9.figshare.20338036
title: Vitamin a supplementation during pregnancy in shaping child growth outcomes: A meta-analysis

description: Abnormal fetal growth increases risks of childhood health complications. Vitamin A supplementation (VAS) is highly accessible, but literature inconsistency regarding effects of maternal VAS on fetal and childhood growth outcomes exists, deterring pregnant women from VAS during pregnancy. This meta-analysis aimed to analyze effects of vitamin A only or vitamin A + co-intervention during pregnancy in healthy mothers (MH) or with complications (MC, night blindness and HIV positive) on perinatal growth outcomes, also assess VAS dose impacts. The Cochrane Library, PubMed, ScienceDirect, Scopus, Embase and Web of Science databases were searched from inception to July 15, 2021. We covered subgroup analyses, including VAS in MH or MC within randomized controlled trial (RCT) or observational studies (OS). Fifty-five studies were included in this meta-analysis (426,098 pregnancies). Vitamin A decreased risk of preterm birth by 9% in MH-RCT (<i>P</i> &lt; 0.001), by 62% in MH-OS (<i>P</i> = 0.029), by 10% in MC-RCT (<i>P</i> = 0.089); decreased LBW by 24% in MC-RCT (<i>P</i> = 0.032); increased neonatal weight in MC-RCT (SMD 0.96; <i>P</i> = 0.051). Besides, vitamin A + co-intervention decreased risks of preterm by 18% in MH-OS (<i>P</i> = 0.021); LBW by 25% in MH-OS (<i>P</i> &lt; 0.001); by 32% in MC-RCT (<i>P</i> = 0.006); decreased neonatal defects by 33% in MH-OS (<i>P</i> = 0.064); decreased anemia by 25% in MH-OS (<i>P</i> = 0.0003); increased neonatal weight in MH-OS (SMD 0.51; <i>P</i> = 0.014); and increased neonatal length in MH-OS (SMD 1.83; <i>P</i> = 0.013). Meta-regression of VAS dose with individual outcomes was not significant, and no side effects were observed for VAS doses up to 4000 mcg (RAE/d). Regardless of maternal health conditions, VAS during pregnancy can safely and effectively improve fetal development and neonatal health even in mothers without VAD.
DOI: 10.6084/m9.figshare.20338036.v1
title: Vitamin a supplementation during pregnancy in shaping child growth outcomes: A meta-analysis

description: Abnormal fetal growth increases risks of childhood health complications. Vitamin A supplementation (VAS) is highly accessible, but literature inconsistency regarding effects of maternal VAS on fetal and childhood growth outcomes exists, deterring pregnant women from VAS during pregnancy. This meta-analysis aimed to analyze effects of vitamin A only or vitamin A + co-intervention during pregnancy in healthy mothers (MH) or with complications (MC, night blindness and HIV positive) on perinatal growth outcomes, also assess VAS dose impacts. The Cochrane Library, PubMed, ScienceDirect, Scopus, Embase and Web of Science databases were searched from inception to July 15, 2021. We covered subgroup analyses, including VAS in MH or MC within randomized controlled trial (RCT) or observational studies (OS). Fifty-five studies were included in this meta-analysis (426,098 pregnancies). Vitamin A decreased risk of preterm birth by 9% in MH-RCT (<i>P</i> &lt; 0.001), by 62% in MH-OS (<i>P</i> = 0.029), by 10% in MC-RCT (<i>P</i> = 0.089); decreased LBW by 24% in MC-RCT (<i>P</i> = 0.032); increased neonatal weight in MC-RCT (SMD 0.96; <i>P</i> = 0.051). Besides, vitamin A + co-intervention decreased risks of preterm by 18% in MH-OS (<i>P</i> = 0.021); LBW by 25% in MH-OS (<i>P</i> &lt; 0.001); by 32% in MC-RCT (<i>P</i> = 0.006); decreased neonatal defects by 33% in MH-OS (<i>P</i> = 0.064); decreased anemia by 25% in MH-OS (<i>P</i> = 0.0003); increased neonatal weight in MH-OS (SMD 0.51; <i>P</i> = 0.014); and increased neonatal length in MH-OS (SMD 1.83; <i>P</i> = 0.013). Meta-regression of VAS dose with individual outcomes was not significant, and no side effects were observed for VAS doses up to 4000 mcg (RAE/d). Regardless of maternal health conditions, VAS during pregnancy can safely and effectively improve fetal development and neonatal health even in mothers without VAD.
DOI: 10.5281/zenodo.8398747
title: Dataset: Code Search Engines for the Next Generation

description: Data set for reproduction purposes (tabular data is stored using Apache's Parqet format).
DOI: 10.5281/zenodo.8398748
title: Dataset: Code Search Engines for the Next Generation

description: Data set for reproduction purposes (tabular data is stored using Apache's Parqet format).
DOI: 10.5281/zenodo.3585690
title: Replication data for: Flux-induced topological superconductivity in full-shell nanowires

description: Replication data for: Flux-induced topological superconductivity in full-shell nanowires
DOI: 10.5281/zenodo.10676715
title: Note added: Flux-induced topological superconductivity in full-shell nanowires

description: Note added as recommended by Expert Panel for "Flux-induced topological superconductivity in full-shell nanowires."
DOI: 10.5281/zenodo.4263106
title: Replication data for: Flux-induced topological superconductivity in full-shell nanowires

description: Additional replication data for: Flux-induced topological superconductivity in full-shell nanowires
DOI: 10.6084/m9.figshare.22959540
title: Synthesis, characterization, crystal structure, and DFT study of 3,4-Diphenyl -1<i>H</i>-pyrrolo[2,3-b]pyridine

description: 3,4-Diphenyl-1<i>H</i>-pyrrolo[2,3-b]pyridine, a useful organic building block, was obtained via a four-step reaction and the structure was determined using FT-IR, <sup>1</sup>H NMR, <sup>13</sup>C NMR, and mass spectrometry, and the single crystals were characterized using X-ray diffraction analysis. The optimal molecular structure, <b>1-2</b> (49.95%), was calculated using density functional theory, and was consistent with the structure determined based on single-crystal diffraction; the relative Gibbs free energy of conformer <b>1-2</b> was 0.001255 kcal mol<sup>−1</sup>. In addition, the molecular electrostatic potentials and frontier molecular orbitals of the title compound were investigated, and surface analysis was performed to further reveal its physicochemical properties.
DOI: 10.6084/m9.figshare.22959540.v1
title: Synthesis, characterization, crystal structure, and DFT study of 3,4-Diphenyl -1<i>H</i>-pyrrolo[2,3-b]pyridine

description: 3,4-Diphenyl-1<i>H</i>-pyrrolo[2,3-b]pyridine, a useful organic building block, was obtained via a four-step reaction and the structure was determined using FT-IR, <sup>1</sup>H NMR, <sup>13</sup>C NMR, and mass spectrometry, and the single crystals were characterized using X-ray diffraction analysis. The optimal molecular structure, <b>1-2</b> (49.95%), was calculated using density functional theory, and was consistent with the structure determined based on single-crystal diffraction; the relative Gibbs free energy of conformer <b>1-2</b> was 0.001255 kcal mol<sup>−1</sup>. In addition, the molecular electrostatic potentials and frontier molecular orbitals of the title compound were investigated, and surface analysis was performed to further reveal its physicochemical properties.
DOI: 10.7910/dvn/m2h8os
title: Femto-LASIK

description: Femto-LASIK is an enhanced version of traditional LASIK eye surgery that employs a femtosecond laser to create a precise corneal flap before reshaping the underlying cornea with an excimer laser to correct refractive errors such as myopia, hyperopia, and astigmatism. This procedure offers increased precision and safety, leading to potentially better visual outcomes and reduced risks of complications, making it a popular choice for patients seeking to improve their vision and reduce dependency on glasses or contact lenses.
DOI: 10.7910/dvn/yalglc
title: ReLEx SMILE

description: ReLEx SMILE is an advanced, minimally invasive laser eye surgery technique designed to correct vision impairments such as myopia (nearsightedness) and astigmatism, utilizing a small, less than 4 mm incision. This method is notable for its rapid recovery time, reduced risk of dry eyes, and preservation of the cornea's biomechanical stability, making it an appealing option for suitable candidates considering laser vision correction.
DOI: 10.6084/m9.figshare.19289788
title: Additional file 3 of Homozygous SPAG6 variants can induce nonsyndromic asthenoteratozoospermia with severe MMAF

description: Additional file 3.
DOI: 10.6084/m9.figshare.19289788.v1
title: Additional file 3 of Homozygous SPAG6 variants can induce nonsyndromic asthenoteratozoospermia with severe MMAF

description: Additional file 3.
DOI: 10.6084/m9.figshare.20338378
title: High expression of <i>HOXA4</i> in patients with glioma indicates unfavorable clinical outcomes

description: <i>HOXA4</i> is a novel oncogene that has been observed in many kinds of tumors, but its role during glioma carcinogenesis and its clinical significance in diagnosing and prognosis human glioma remains unknown. In the present study, the Chinese Glioma Atlas (CGGA)-RNA sequencing database, CGGA microarray, and The Cancer Genome Atlas (TCGA)-RNA seq data from 1674 glioma patients were obtained from online databases and analyzed using quantitative reverse transcription-polymerase chain reaction (RT-qPCR) to detect changes in the expression level of <i>HOXA4</i> and characterize the relationship between <i>HOXA4</i> and the clinical characteristics and prognosis of patients with glioma. Gene set enrichment analysis (GSEA) was used to reveal how <i>HOXA4</i> regulates tumor-related pathways. <i>HOXA4</i> mRNA levels in glioma tissue were higher than those in adjacent brain tissue. <i>HOXA4</i> expression was also closely related to the clinical and molecular characteristics of gliomas, such as tumor grade and isocitrate dehydrogenase (IDH) mutation. Functional enrichment analysis revealed that <i>HOXA4</i> could regulate cancer-related signal pathways, such as Cell cycle, Cell adhesion molecules cams, and JAK/STAT signaling pathway. Results of <i>in vitro</i> experiments confirmed that knockdown of HOXA4 blocks the cell cycle pathway and inhibits the proliferation, invasion and chemotherapy resistance in gliomas. We concluded that <i>HOXA4</i> was an independent risk factor for glioma and may have clinical diagnostic potential. Meanwhile, our findings revealed that <i>HOXA4</i> could be used as a biomarker for glioma diagnosis and treatment.
DOI: 10.6084/m9.figshare.20338378.v1
title: High expression of <i>HOXA4</i> in patients with glioma indicates unfavorable clinical outcomes

description: <i>HOXA4</i> is a novel oncogene that has been observed in many kinds of tumors, but its role during glioma carcinogenesis and its clinical significance in diagnosing and prognosis human glioma remains unknown. In the present study, the Chinese Glioma Atlas (CGGA)-RNA sequencing database, CGGA microarray, and The Cancer Genome Atlas (TCGA)-RNA seq data from 1674 glioma patients were obtained from online databases and analyzed using quantitative reverse transcription-polymerase chain reaction (RT-qPCR) to detect changes in the expression level of <i>HOXA4</i> and characterize the relationship between <i>HOXA4</i> and the clinical characteristics and prognosis of patients with glioma. Gene set enrichment analysis (GSEA) was used to reveal how <i>HOXA4</i> regulates tumor-related pathways. <i>HOXA4</i> mRNA levels in glioma tissue were higher than those in adjacent brain tissue. <i>HOXA4</i> expression was also closely related to the clinical and molecular characteristics of gliomas, such as tumor grade and isocitrate dehydrogenase (IDH) mutation. Functional enrichment analysis revealed that <i>HOXA4</i> could regulate cancer-related signal pathways, such as Cell cycle, Cell adhesion molecules cams, and JAK/STAT signaling pathway. Results of <i>in vitro</i> experiments confirmed that knockdown of HOXA4 blocks the cell cycle pathway and inhibits the proliferation, invasion and chemotherapy resistance in gliomas. We concluded that <i>HOXA4</i> was an independent risk factor for glioma and may have clinical diagnostic potential. Meanwhile, our findings revealed that <i>HOXA4</i> could be used as a biomarker for glioma diagnosis and treatment.
DOI: 10.6084/m9.figshare.19289797
title: Additional file 2 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 2: Table S1. Ferroptosis and iron metabolism-related genes.
DOI: 10.6084/m9.figshare.19289797.v1
title: Additional file 2 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 2: Table S1. Ferroptosis and iron metabolism-related genes.
DOI: 10.6084/m9.figshare.19289803
title: Additional file 3 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 3: Table S2. The annotated gene set file used in ssGSEA.
DOI: 10.6084/m9.figshare.19289803.v1
title: Additional file 3 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 3: Table S2. The annotated gene set file used in ssGSEA.
DOI: 10.6084/m9.figshare.19289806
title: Additional file 4 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 4: Table S3. 76 differentially expressed ferroptosis genes and their calculated values.
DOI: 10.6084/m9.figshare.19289806.v1
title: Additional file 4 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 4: Table S3. 76 differentially expressed ferroptosis genes and their calculated values.
DOI: 10.6084/m9.figshare.19289809
title: Additional file 5 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 5: Table S4. Univariate regression values for 22 intersection genes.
DOI: 10.5281/zenodo.10697649
title: Dataset for: "The presence of clouds lowers climate sensitivity in the MPI-ESM1.2 climate model"

description: Code and data used to produce the figures for the publication "The presence of clouds lowers climate sensitivity in the MPI-ESM1.2 climate model"
DOI: 10.5281/zenodo.10697650
title: Dataset for: "The presence of clouds lowers climate sensitivity in the MPI-ESM1.2 climate model"

description: Code and data used to produce the figures for the publication "The presence of clouds lowers climate sensitivity in the MPI-ESM1.2 climate model"
DOI: 10.6084/m9.figshare.19289809.v1
title: Additional file 5 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 5: Table S4. Univariate regression values for 22 intersection genes.
DOI: 10.6084/m9.figshare.19289815
title: Additional file 6 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 6: Table S5. Differentially expressed genes in high and low risk groups.
DOI: 10.6084/m9.figshare.19289815.v1
title: Additional file 6 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 6: Table S5. Differentially expressed genes in high and low risk groups.
DOI: 10.6084/m9.figshare.19289818
title: Additional file 7 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 7: Table S6. Results of GO enrichment analysis of differential genes in high and low risk groups.
DOI: 10.6084/m9.figshare.19289818.v1
title: Additional file 7 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 7: Table S6. Results of GO enrichment analysis of differential genes in high and low risk groups.
DOI: 10.6084/m9.figshare.19289821
title: Additional file 1 of Characterization of UDP-glycosyltransferase family members reveals how major flavonoid glycoside accumulates in the roots of Scutellaria baicalensis

description: Additional file 1: Table S1. Flavonoid glycosides detected in the root metabolome. Table S2. Sequences of UGT genes identified from S. baicalensis genome. Table S3. The list of enzyme names, gene locus, and their subfamilies of predicted 7-O glycosyltransferases in S. baicalensis. Table S4. Primers used for the cloning of SbUGT and SbUGAT genes.
DOI: 10.6084/m9.figshare.19289821.v1
title: Additional file 1 of Characterization of UDP-glycosyltransferase family members reveals how major flavonoid glycoside accumulates in the roots of Scutellaria baicalensis

description: Additional file 1: Table S1. Flavonoid glycosides detected in the root metabolome. Table S2. Sequences of UGT genes identified from S. baicalensis genome. Table S3. The list of enzyme names, gene locus, and their subfamilies of predicted 7-O glycosyltransferases in S. baicalensis. Table S4. Primers used for the cloning of SbUGT and SbUGAT genes.
DOI: 10.7910/dvn/xnkhwn
title: LASEK

description: LASEK (Laser-Assisted Sub-Epithelial Keratectomy) is a type of refractive eye surgery that combines elements of PRK (photorefractive keratectomy) and LASIK, involving the loosening and folding back of the epithelial layer before reshaping the cornea with an excimer laser to correct vision issues like myopia, hyperopia, and astigmatism. This technique is particularly beneficial for patients with thin corneas or those at higher risk for corneal flap complications, offering a safer alternative with the potential for excellent visual outcomes, albeit with a longer recovery period compared to LASIK.
DOI: 10.6084/m9.figshare.19289824
title: Additional file 8 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 8: Table S7. Results of KEGG enrichment analysis of differential genes in high and low risk groups.
DOI: 10.6084/m9.figshare.19289824.v1
title: Additional file 8 of Comprehensive analysis of ferroptosis-related genes and prognosis of cutaneous melanoma

description: Additional file 8: Table S7. Results of KEGG enrichment analysis of differential genes in high and low risk groups.
DOI: 10.5066/f77080b9
title: Water Resources of the Energy Development Area of the Williston Basin in Eastern Montana, Western North Dakota, and Northwest South Dakota

description: A set of comma-separated value tables containing data for streamflow, water quality, surface-water features, and produced waters in the energy development area of the Williston Basin in eastern Montana, western North Dakota, and northwest South Dakota.
DOI: 10.5517/ccdc.csd.cc25ztcc
title: CCDC 2025613: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Montin, Adam Wau|2024|U.S.Patents|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.9328358
title: Designing polygonal tensegrities from Enumeration–screening method for the design of simple polygonal tensegrities

description: Source code for polygonal tensegrities with 7 bars: 'tensegrity2D_7b.m' is main routine with subroutines 'ts2D_2unique.m' and 'ts2D_3feasible.m'.
DOI: 10.6084/m9.figshare.9328358.v1
title: Designing polygonal tensegrities from Enumeration–screening method for the design of simple polygonal tensegrities

description: Source code for polygonal tensegrities with 7 bars: 'tensegrity2D_7b.m' is main routine with subroutines 'ts2D_2unique.m' and 'ts2D_3feasible.m'.
DOI: 10.7910/dvn/2vaapr
title: LASIK

description: LASIK (Laser-Assisted In Situ Keratomileusis) is a popular refractive eye surgery that uses an excimer laser to reshape the cornea, correcting vision problems such as myopia (nearsightedness), hyperopia (farsightedness), and astigmatism, thereby reducing or eliminating the need for glasses or contact lenses. The procedure is known for its quick recovery time, with most patients experiencing a significant improvement in vision almost immediately after surgery, making it a highly sought-after option for those looking to improve their visual acuity.
DOI: 10.6084/m9.figshare.14571297
title: Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa

description: Genome assemblies and annotations of B. rapa accessions.