cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/uschist-c104-284098
title: Iconic Los Angeles images, 1997-2006

description: 24 photographs of iconic images and scenes from Los Angeles (mostly), California, 1997-2006. Included are cityscape of downtown (1997 -- 2 copies of 1 image, two different color corrections), boutiques along the 7,000 block of Melrose Avenue (1997), window shopping (2003 January 29), California/US route 66 sign (2003 March 9), flowers on the rocky cliffs overlooking the Pacific coast (2004 May 26), pier on the Pacific coast (2005 February 6), looking up a palm tree (2005 March 26), public pay binoculars on the pier (2005 March 9 -- 2 copies of 1 image, one black and white, the other color), a group of people posting below the Hollywood sign (2005 April 10 -- 3 copies of 1 image, two different color corrections and one black and white), Cathay House in Chinatown in San Francisco (2005 December 31), Sunset Boulevard and Beverly Drive intersection street signpost in Beverly Hills (2006 January 31 -- 2 copies of 1 image, one color, one black and white), two surfers walking on the beach (2006 February 20 -- 2 copies of 1 image, one color, one black and white), Hollywood Bowl (2006 April 7), Hollywood and Highland Center (2006 April 7), Walt Disney Concert Hall (2006 April 13), hikers on a log bridge over a forest stream (2006 May 12), Getty Villa on Pacific Coast Highway in Pacific Palisades (2006 May 17), and Rodeo Drive and Wilshire Boulevard intersection street signpost in Beverly Hills (2006 May 17).
DOI: 10.25549/uschist-c104-284105
title: Iconic Los Angeles images, 1997-2006

description: 24 photographs of iconic images and scenes from Los Angeles (mostly), California, 1997-2006. Included are cityscape of downtown (1997 -- 2 copies of 1 image, two different color corrections), boutiques along the 7,000 block of Melrose Avenue (1997), window shopping (2003 January 29), California/US route 66 sign (2003 March 9), flowers on the rocky cliffs overlooking the Pacific coast (2004 May 26), pier on the Pacific coast (2005 February 6), looking up a palm tree (2005 March 26), public pay binoculars on the pier (2005 March 9 -- 2 copies of 1 image, one black and white, the other color), a group of people posting below the Hollywood sign (2005 April 10 -- 3 copies of 1 image, two different color corrections and one black and white), Cathay House in Chinatown in San Francisco (2005 December 31), Sunset Boulevard and Beverly Drive intersection street signpost in Beverly Hills (2006 January 31 -- 2 copies of 1 image, one color, one black and white), two surfers walking on the beach (2006 February 20 -- 2 copies of 1 image, one color, one black and white), Hollywood Bowl (2006 April 7), Hollywood and Highland Center (2006 April 7), Walt Disney Concert Hall (2006 April 13), hikers on a log bridge over a forest stream (2006 May 12), Getty Villa on Pacific Coast Highway in Pacific Palisades (2006 May 17), and Rodeo Drive and Wilshire Boulevard intersection street signpost in Beverly Hills (2006 May 17).
DOI: 10.25549/uschist-ouc12569651
title: Bovard Administration Building, USC, 1950s-2008

description: 57 photographs of George Finley Bovard Administration Building, University Avenue and later 3551 Trousdale Parkway, University of Southern California, 1950s, 1997, 2002, 2004, 2005, 2006, & 2008. Images include busy pedestrian and automobile traffic in front of the building in the 1950s, students posing and talking near the building, iconic and striking images of the main tower at day and at night, a 360-degree view, the adjacent student union building and the tower of Waite Phillips Hall, and the skyscrapers of downtown Los Angeles in the background. Credits: #3/18 copyright Accusoft; #7/5, #7/6, #7/10, #7/11, #7/12, #7/16, #7/24, #7/27 by Dietmar Quistorf; #8/5, #8/7, #8/10, #8/11, #8/12, #8/13, #8/50, #8/120, #8/127, #8/128, #8/129, #8/135; #8/136, #8/137, #8/139, #8/140, #8/143, #8/144, #8/146, #8/147, #8/171, #8/178, #8/191, #9/192, #62/66 by Philip Channing; #62/109, #62/111 uncredited.
DOI: 10.25549/uschist-c104-284143
title: Gwynn Wilson Student Union, USC, 1997-2006

description: 23 photographs of Gwynn Wilson Student Union, 3601 Trousdale Parkway (previously University Avenue), University of Southern California, 1950s, 1997, 2002 October 28, 2004 May 19, 2004 June 21, 2006 June 14, 2006 February 14, 2006 March 2, & 2006 April 6. Included are exterior images (architectural details, students around the building, adjacent buildings) and interior images (eating places). Credit: photo #8/4, #8/126, #8/202 by Philip Channing; #62/112 uncredited.
DOI: 10.25549/uschist-c104-286423
title: USC Black Alumni reception for Steven Sample's inauguration, 1991

description: 41 photographs documenting the University of Southern California Black Alumni reception on behalf of Steven Sample during his inauguration as president of USC, 1991 September 6.
DOI: 10.25549/uschist-c104-284881
title: Students outside, USC, 1997-2006

description: 42 photographs of students outside on the campus of the University of Southern California, 1997, 2004, & 2006. Students are shown talking, walking, studying, bicyling, practicing, posing, socializing, acting, and working primarily on campus. Credit: photos #8/47, #8/66, #8/67, #8/118, #8/157, #8/158, #8/163, #8/172, #8/182, #8/190, #8/203, #8/207 by Philip Channing.
DOI: 10.25549/uschist-c104-286754
title: Students and professors in learning interior environments, USC, 1997-2006

description: 69 photographs of students and professors inside various buildings at the University of Southern California, 1997, 2002 August 29, 2004 June 21, 2005 October 3, 2006 March 1, & 2006 April 6. Students are shown studying, talking and learning in social locations, hallways, libraries, computer labs, lecture halls, classrooms, laboratories, and dormatories. Credit: photo #8/173 by Philip Channing.
DOI: 10.25549/uschist-c104-286757
title: Students and professors in learning interior environments, USC, 1997-2006

description: 69 photographs of students and professors inside various buildings at the University of Southern California, 1997, 2002 August 29, 2004 June 21, 2005 October 3, 2006 March 1, & 2006 April 6. Students are shown studying, talking and learning in social locations, hallways, libraries, computer labs, lecture halls, classrooms, laboratories, and dormatories. Credit: photo #8/173 by Philip Channing.
DOI: 10.25549/uschist-c104-286761
title: Students and professors in learning interior environments, USC, 1997-2006

description: 69 photographs of students and professors inside various buildings at the University of Southern California, 1997, 2002 August 29, 2004 June 21, 2005 October 3, 2006 March 1, & 2006 April 6. Students are shown studying, talking and learning in social locations, hallways, libraries, computer labs, lecture halls, classrooms, laboratories, and dormatories. Credit: photo #8/173 by Philip Channing.
DOI: 10.15468/dl.6kcadj
title: Occurrence Download

description: A dataset containing 42887 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nemertesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 42887 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030241-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.1192705.v4
title: Variation in crossover frequencies perturb crossover assurance without affecting meiotic chromosome segregation in Saccharomyces cerevisiae.

description: <strong>"Variation in crossover frequencies perturb crossover assurance without affecting meiotic chromosome segregation in <em>Saccharomyces cerevisiae</em>"</strong> - This work has been published in Genetics journal. We have deposited all the processed files generated by analysing Whole Genome Sequencing data from 80 yeast tetrads in the S288c/YJM789 background (20 wild type, 38 <em>msh4-R676W</em>, 18 <em>msh4</em>-null, and 4 WT SK1 MSH4/5). Recombination analysis was carried out using ReCombine software, and the output files generated are included in this deposit. We have also uploaded an in house R script written to process the ReCombine output files into images used in the manuscript. citation: Krishnaprasad GN, Anand MT, Lin G, Tekkedil MM, Steinmetz LM, Nishant KT. Variation in Crossover Frequencies Perturb Crossover Assurance Without Affecting Meiotic Chromosome Segregation in Saccharomyces cerevisiae. Genetics 2015;199(2):399-412. doi:10.1534/genetics.114.172320. PubMed: http://www.ncbi.nlm.nih.gov/pubmed/25467183 Genetics: http://www.genetics.org/content/199/2/399.long
DOI: 10.6084/m9.figshare.1468360.v1
title: Data from "Strong geographical variation in wing aspect ratio of a damselfly, Calopteryx maculata (Odonata: Zygoptera)"

description: The data relate to raw measurements of wing size and aspect ratio in 907 specimens of male Calopteryx maculata (Table S1). Also included are two further tables which contain landmark data for a subset of 331 specimens of C. maculata forewings (Table S2) and hind wings (Table S3).
DOI: 10.6084/m9.figshare.7611332.v1
title: Share for Rare: Promoting Data-Sharing through Japan's Initiative on Rare and Undiagnosed Diseases (IRUD)

description: 20 minute lightning talk presentation given by Takeya Adachi, from Japan Agency for Medical Research and Development (AMED), at the Better Science through Better Data 2018 event. The video recording, slides and scribe are included.
DOI: 10.6084/m9.figshare.16962130.v1
title: Plant footprint decreases the diversity of topsoil organic matter after millions of years of ecosystem development

description: Data from <i>Plant footprint decreases the
diversity of topsoil organic matter after millions of years of ecosystem
development </i>
DOI: 10.6084/m9.figshare.8038451.v1
title: spherical isobaric collision

description: spherical isobaric collision
DOI: 10.17632/584h5mk8mp
title: Methionine cycle dysregulation mediates REDD1 overexpression-induced muscle atrophy in cancer cachexia

description: The essential amino acid methionine plays a pivotal role in one-carbon metabolism, facilitating the production of S-adenosylmethionine (SAM), a critical supplier for DNA methylation and thereby a modulator of gene expression. Here, we report that the methionine cycle is disrupted in skeletal muscle during cancer cachexia, leading to ER stress and DNA hypomethylation-induced expression of Ddit4, encoding the REDD1 protein, a key inhibitor of AKT signaling. Targeting DNA methylation by depletion or pharmacological inhibition of DNMT3A can exacerbate cachexia. Restoring DNMT3A or REDD1 KO in mice alleviates cancer cachexia-induced skeletal muscle atrophy. Methionine supplementation restores DNA methylation of the Ddit4 promoter in a DNMT3A-dependent manner, thereby inhibiting ATF4-mediated Ddit4 transcription. Thus, with the identification of the methionine/SAM-DNMT3A/DNA hypomethylation-Ddit4/REDD1 axis, our study provides molecular insights into an epigenetic mechanism underlying cancer cachexia, and it suggests nutrient supplementation as a promising therapeutic strategy to prevent or reverse cachectic muscle atrophy.
DOI: 10.6084/m9.figshare.26356507.v1
title: R code for combined effects of thermal environment and gene regulation on metabolic enzyme activities of major metabolic tissues in a winter-breeding amphibian

description: Coding.R: R code used for data analysis in this study.
DOI: 10.6084/m9.figshare.13249988.v1
title: Alignment of J homologs

description: A multiple sequence alignments consisting of 910 orthologs of J C-terminus, which mediates attachment of phage lambda to <i>E. coli</i>.
DOI: 10.6084/m9.figshare.18252110.v1
title: Supplementary Material for: Novel Centromeric and Subtelomeric Repetitive DNA Sequences for Karyotyping the Bambara Groundnut (<b><i>Vigna subterranea</i></b> L. Verdc.)

description: Bambara groundnut (<i>Vigna subterranea</i> L. Verdc.) is an un­derutilized minor legume crop with climate resilience and great potential use in world agriculture. This study aimed to cytogenetically characterize the genome and chromosome properties of Bambara groundnut. We cloned, sequenced, and mapped a 50-bp centromere-specific tandem repeat on all chromosomes. In addition, a 400-bp subtelomeric repeat was discovered and mapped on a single pair of chromosomes. A Bambara groundnut karyotype was constructed using these novel repeats along with ribosomal RNA genes (45S and 5S) and telomeric DNA sequences. This study provides the first analysis of the genome and chromosome properties of Bambara groundnut. We discuss our findings in relation to genetic improvement of Bambara groundnut and centromere evolution in legume species.
DOI: 10.17632/jv4hgjywgb
title: CAF_LESODT_simulation_output_data

description: This data corresponds to the Large-Eddy Simulation outputs used to calculate all results presented in the paper "Large-Eddy Simulation of smooth and rough channel flows using a one-dimensional stochastic wall model", by Freire and Chamecki.
DOI: 10.6084/m9.figshare.25866661.v1
title: Codes

description: Codes used for analysing the data presented in Fig. 1d and Supplementary Fig. 9.
DOI: 10.6084/m9.figshare.25889671.v2
title: Breeding Metadata Rupicola peruvianus

description: This project encompases novel data of Perú, Ecuador and Colombia, on incubation behavior of the Andean cock-of-the-rock (Rupicola peruvianus) and detailed descriptions of nests, eggs, and nestlings, with the first photographic evidence of nestlings being fed with vertebrates and evidence to support the hypothesis of cryptic coloration in nestlings as camouflage to resemble moss-covered fruits. This study also includes parental care behavior, measures of nests, eggs and nestlings in the three countries. It also describes clutch size, egss and nest shape, nest location and materials it is build with, season activity of breeding, feeding and development of nestlings.
DOI: 10.17632/6ssgc767bc
title: Supplementary data for sulfide intrusion, genotypic diversity, and clone size in Halodule wrightii

description: Supplementary figures, as well as genotypic, isotopic, total sulfur, and sulfide intrusion data for Halodule wrightii samples from the Texas Gulf coast.
DOI: 10.6084/m9.figshare.11607969.v1
title: Pendular See-Saw Nystagmus: A Rare Presenting Manifestation of Craniopharyngioma

description: Pendular see-saw nystagmus is an extremely rare form of nystagmus characterised by cyclical movement of the eyes with a conjugate torsional component and a disjunctive vertical component. Intorsion and elevation of one eye is accompanied by simultaneous extorsion and depression of the contralateral eye. Most commonly it results from a suprasellar/parasellar mass compressing the meso-diencephalic region. Herein, we report a case of a 5-year-old girl who presented with pendular see-saw nystagmus secondary to a craniopharyngioma. The nystagmus resolved following excision of the lesion.
DOI: 10.6084/m9.figshare.25383697.v1
title: Silicodata: A benchmark chest X-ray dataset for Silicosis detection with radiologist's annotations

description: This research attempts to provide first its type public dataset for silicosis detection. The dataset contains frontal chest X-rays collected over three years. The data has been collected from the stone workers in the primary health centres of Rajasthan, India. The dataset contains samples of silicosis, STB, TB, and normal. The average size of each sample is around 3567 x 2898. The samples in the dataset are made available as three-channel JPG images. The dataset is divided into two sets:Set A: It contains images with only disease labels.Set B: It contains images with lung segmentation maps, annotations and disease labels
DOI: 10.6084/m9.figshare.28746515.v1
title: Table S2. Markers used for initial mapping of C6QTL in segregating populations shown in Table S1. (17 pages)

description: Table S2. Markers used for initial mapping of C6QTL in segregating populations shown in Table S1. (17 pages). <b>A dispensable peptidase facilitates maize lethal necrosis by promoting the replication of maize chlorotic mottle virus</b>
DOI: 10.17632/jgw5bgtc35
title: Data for: Genetic diversity and phylogenetic relationships among citrus germplasm in the Western Caucasus

description: In our study, 130 different citrus accessions including 24 species or interspecific hybrids maintained and bred at the Federal Research Centre, the Subtropical Scientific Centre of the Russian Academy of Sciences (FRC SSC RAS) were genetically investigated using 13 biparental (ncSSR) and 13 uniparental (orgDNA) markers. After STRUCTURE analysis, the single accessions were allocated to eight genetic clusters and their relationships were elucidated. We identified twenty accessions as misclassified and reassigned them to the correct species. A high genetic diversity was observed on basis of the nuclear ncSSR markers, while on basis of the chloroplast orgDNA a clear cluster-specific genetic structure was detected.
DOI: 10.6084/m9.figshare.7140197.v1
title: Supplementary Material for: Nicotinamide Phosphoribosyltransferase Inhibitor APO866 Prevents IL-1β-Induced Human Nucleus Pulposus Cell Degeneration via Autophagy

description: <b><i>Background/Aims</i></b><b><i>:</i></b> Intervertebral discs consist of an extracellular matrix (ECM) with a central gelatinous nucleus pulposus (NP) enclosed in an outer layer known as the annulus fibrosus. ECM metabolic disorders result in loss of boundary between the annulus fibrosus and NP, which can lead to intervertebral disc degeneration (IDD). Proinflammatory cytokines, such as interleukin (IL)-1β, mediate the progression of IDD. Nicotinamide phosphoribosyltransferase (Nampt) catalyzes the first step in the biosynthesis of nicotinamide adenine dinucleotide (NAD) and is known to be induced by IL-1β. APO866 is an inhibitor of NAD biosynthesis and is involved in autophagy. LC3 (microtubule-associated protein 1 light chain 3) is a key regulator of autophagy and is used as an indicator of increased autophagy. Herein, we investigate the role of APO866 in regulating autophagy in NP cells and IL-1β mediated NP cell degeneration and apoptosis. <b><i>Methods:</i></b> NP cells were extracted from IDD tissues and cultured in DMEM/F12 medium. Nampt was induced by different concentrations of IL-1β (0, 0.5, 1, 5, 10 ng/mL) for 24 h or NP cells were treated with 10 ng/mL IL-1β for 0, 6, 12, 48 h. QRT-PCR and western blots were used to detect Nampt and ECM-related protein expression in NP tissue of patients with IDD and in NP cells. Confocal analysis was used to detect membrane-bound LC3, Aggrecan, and Collagen II. <b><i>Results:</i></b> Nampt is expressed in NP tissue at higher levels in severe grades of IDD (Grade IV and V) compared with low grades (Grade II and III). In NP cells, 10 ng/mL IL-1β induced Nampt expression for 48 h, increased expression of the degradative-associated proteins, ADAMTS4/5 and MMP-3/13, and decreased expression of ECM-related proteins, Aggrecan and Collagen II. However, the Nampt inhibitor APO866 blocked IL-1β induction, and the knockdown of Nampt expression increased the expression of ECM proteins that were inhibited by IL-1β. Moreover, evidence provided by the autophagic markers LC3 and Beclin-1 indicated that APO866 induced NP cell autophagy. Furthermore, although APO866 inhibited the downregulated expression of ECM-related proteins by IL-1β, this function was blocked by autophagy inhibitor, 3-methyladenine. <b><i>Conclusion:</i></b> APO866 protects NP cells and induces autophagy by inhibiting IL-1β-induced NP cell degeneration and apoptosis, which may have therapeutic potential in IDD.
DOI: 10.6084/m9.figshare.12083871.v1
title: Multi-modal, super resolution, isotropic, and cropped Kirby

description: Symmetric, multi-modal, isotropic, and cropped templates from the Kirby (i.e., MMRR) data set. <br>
DOI: 10.6084/m9.figshare.26706793.v1
title: COTS protein structures

description: Whole proteome structuring of crown-of-thorns starfish (<i>Acanthaster planci</i>), using ColabFold 1.5.x.
DOI: 10.6084/m9.figshare.9876380.v2
title: USA Halloween spending data

description: Data from webs scrape from National Confectionery.
DOI: 10.17632/vxbt7rc27j
title: Effective antiretroviral therapy, anal high-risk human papillomavirus, anal intraepithelial neoplasia and anal cancer: a systematic review and meta-analysis

description: This dataset contains data evaluating the association of antiretroviral therapy, HIV plasma viral load and contemporary and nadir CD4+ T-cell count (exposures) and the following outcomes: outcomes: anal HR-HPV prevalence, incidence and persistence; cytology- or histology-confirmed anal squamous intraepithelial lesions [SIL]/anal intraepithelial neoplasia [AIN] prevalence, incidence, progression or regression, and anal cancer incidence among people living with HIV (PLHIV). It includes raw data for outcomes and exposure, and the crude effect estimate, and the adjusted effect estimate provided in the published material, in additional to information on the any adjustment for confounding, where available.
DOI: 10.6084/m9.figshare.25357060.v1
title: Data for "Different bilingual experiences predict different executive functions: Evidence from mouse-tracking" By Asli Yurtsever, Kaiah Sotebeer, and John G. Grundy.

description: There is evidence to suggest that the effects of bilingualism on executive functions need to be examined along a continuum rather than a dichotomy. The present study addressed this need by examining the influence of different bilingual experiences on executive functioning using a Flanker and Stroop mouse-tracking task which taps into more dynamic cognitive processes than typical behavioral paradigms. We sampled 98 bilingual young adults and investigated conflict and sequential congruency effects (SCE). We found that mouse-tracking metrics captured links that were not identified with overall reaction times and SCEs were more sensitive to detecting relations between L2 experiences and EF than simple conflict effects. Second-language age of acquisition (AoA) and L1/L2 switching frequency consistently predicted EF outcomes. This association was moderated by the attentional demands of the task. These findings highlight the complexity of the effects of bilingualism on cognition, and the use of more sensitive measures to capture these effects.
DOI: 10.6084/m9.figshare.3494312.v1
title: Data for paper: Clark's nutcracker occurrence

description: Clark's nutcracker occupancy data from 2009-2013, Greater Yellowstone Ecosystem<br>