cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25529554.v1
title: Transport of Fish Eggs Above Submerged Obstacles in Streams: The Effect of Egg Properties, Obstacle Submergence Ratio and Gap Length.

description: This study investigates the transport of aquatic invasive species in their early life stages focusing on flow-particle-obstacle interactions in streams. Two types of surrogate eggs were tested in laboratory experiments with a simplified riverbed geometry with submerged obstacles. Image processing techniques, Particle Image Velocimetry (PIV) and Lagrangian Particle Tracking, were used to obtain flow velocity fields and particle trajectories, respectively.
DOI: 10.3535/vsp-eaf-vlv
title: †Sciponoceras bohemicum (Fritsch, 1872)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zr1-tvr-8s4
title: †Panenka Barrande, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k8f-6yx-34l
title: Chondrites intricatus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nsf-07j-6hd
title: †Panenka Barrande, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12118332.v1
title: Algal.csv

description: An R sript to calculate LD50s with 95% CLs, judge the significance between two LD50s, and measure parallelism of dose-response lines using probit/logit-log(dose) model.
DOI: 10.3535/4sv-s5k-m0a
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l7t-n6d-876
title: limestone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3478529.v1
title: SRS017821.zip

description: This sample is part of the GutCyc Collection (www.gutcyc.org), a compendium of environmental pathway / genome databases. GutCyc was constructed from 418 human microbiome assemblies using the open-source MetaPathways pipeline, that enables reproducible metagenomic annotation.
DOI: 10.3535/l0n-b7v-f51
title: limestone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pwm-hmb-ac3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27015655.v1
title: Theoretical optimization method of tunnel lining in fractured rock mass based on surrounding rock classification and Hoek-Brown criterion

description: Rationally accounting for the synergistic effects between tunnel lining and surrounding rock is crucial for accurately predicting reserved deformation in the design of fractured rock tunnels. This study employs a rock mass classification approach and the Hoek-Brown (H-B) strength criterion to evaluate the deformation behavior of surrounding rock, establishing a robust theoretical framework for calculating tunnel lining deformation considering the rock-lining interaction. A lining optimization approach is proposed, ensuring stress safety of the concrete lining and considering the displacement release rate of the surrounding rock. Case analysis validates the lining design's safety in the study section, identifying optimal parameters: support at 9 mm of tunnel wall deformation and a reduced lining thickness of 47 cm, achieving a 36.5% decrease from the initial design. The method enables the calculation of optimal support timing and lining thickness for various rock conditions, providing substantial reference for tunnel lining optimization.
DOI: 10.6084/m9.figshare.28601177.v1
title: ACAT1 linkage analysis.rar

description: Linkage Analysis Raw Data
DOI: 10.3535/854-pmk-703
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25111712.v2
title: Arctic COSMO-CLM hindcast 2019

description: Russian Arctic COSMO-CLM hindcast 2019 (from January to July only!)
DOI: 10.6084/m9.figshare.3564426.v1
title: Appendix B. Images of apparatus used for field experiments.

description: Images of apparatus used for field experiments.
DOI: 10.15468/dl.7mjcbp
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Acacia mearnsii De Wild."
 ]
}

 The dataset includes 68 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009737-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qeu2ue
title: Occurrence Download

description: A dataset containing 258 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Crocodylidae)"
 ]
}

 The dataset includes 258 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026273-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ut469h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hysterothylacium sinense Li, An & Zhang, 2007",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026274-241126133413365/datasets/export for details.
DOI: 10.5284/1124413
title: Images and Site Records from an Archaeological Trench Evaluation at 34 Brackley Road, Silverstone, Northamptonshire, 2012

description: This collection comprises images and site records from an archaeological trench evaluation at 34 Brackley Road, Silverstone, Northamptonshire. This work was undertaken by Network Archaeology Ltd. in 2012. The proposed development area occupied 1.42ha of open ground to the east of Silverstone Manor within an area identified as forming part of the medieval village of Silverstone. 12 evaluation trenches were laid out to investigate both the footprints of new buildings and areas of proposed landscaping. All of the features, layers and deposits identified during the machine stripping appeared to date to the 20th century and were probably associated with fairly recent demolition and landscaping events carried out within the grounds of Silverstone House and the construction of Brackley Road.&lt;/p&gt;
DOI: 10.60952/znzg-4d20
title: Połączenia międzykomórkowe  w przedimplantacyjnych stadiach rozwoju zarodkowego myszy - zarodek 2-komórkowy

description: Celem badania było ultrastrukturalne badanie kontaktów międzykomórkowych zachodzących w przedimplantacyjnych stadiach rozwoju zarodkowego myszy - zarodek 2-komórkowy. Doświadczenie przeprowadzono na samicach myszy szczepu Swiss w wieku od 6 do 8 tygodni. Zarodki 2-komórkowe przygotowane zostały do badań standardową techniką mikroskopowo-elektronową oraz z  zastosowaniem czerwieni rutenowej. Na zdjęciu zarodek 2-komórkowy. Czerwień rutenowa obecna na powierzchni blastomerów i w szczelinowatych przestrzeniach międzykomórkowych. Powiększenie 20 000 x. Dokumentacja zdjęciowa powstała przy użyciu mikroskopu elektronowego JEM 100C firmy Jeol.
DOI: 10.15468/dl.q9vbw4
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Metapenaeus joyneri (Miers, 1880)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 242 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026275-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjh82n
title: Occurrence Download

description: A dataset containing 190626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vaccinium uliginosum L., Vaccinium uliginosum L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to January",
 "Month is less than or equal to September"
 ]
}

 The dataset includes 190626 records from 422 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026229-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqhqh8
title: Occurrence Download

description: A dataset containing 163 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudocaranx dentex (Bloch & Schneider, 1801)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 163 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026276-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14459/2023mp1715745
title: Living Libraries of Mixed Metal Clusters and Catalysis

description: Original experimental data (LIFDI-MS, IR, NMR) and calculations data (input files, output files and optimized structures) for the manuscript titled Living Libraries of Mixed Metal Clusters
DOI: 10.15468/dl.n6x35n
title: Occurrence Download

description: A dataset containing 1734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((124.54629 -1.55596,124.25784 -1.68321,124.29177 -2.11165,124.97048 -2.20073,125.55163 -2.16255,125.89098 -2.451,125.98006 -2.6122,126.24306 -2.3195,126.54 -1.74684,126.23458 -1.62383,125.8528 -1.54747,124.54629 -1.55596))"
 ]
}

 The dataset includes 1734 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026277-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jd6rp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudocaranx cheilio (Snyder, 1904)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026278-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.27992600
title: Decline in stomatal conductance is the primary reason for low photosynthesis in veteran pedunculate oak trees

description: Veteran trees are important elements in forests, urban and suburban areas and represent part of our cultural heritage. However, increasing age also brings a reduction in vitality. Information on tree physiological vitality can be gained by examining ecophysiological traits, such as photosynthesis, stomatal conductance, and leaf water potential. Here, we assess the effects of age on photosynthesis and water status of 600-year-old pedunculate oak (<i>Quercus robur</i>) by comparing them with neighbouring 25-year-old trees. While gas exchange measurements indicated lowered photosynthesis in old trees, maximum rates of Rubisco carboxylation and electron transport, along with day respiration, were similar to younger trees, suggesting that biochemical limitations to photosynthesis were not the reason. Moreover, while there was no difference in light-adapted and dark-adapted chlorophyll fluorescence between old and young trees, stomatal conductance (under unlimited soil water availability) was lower, indicating increased stomatal limitations to photosynthesis in veteran trees. On the other hand, high water potential during mild summer drought conditions indicated better access to soil water in old trees, while stomatal conductance in old trees was higher than in young trees at night. A reduced ability to open and close stomata may be a reason for the observed decline in veteran tree vitality, with a lowered ability to regulate stomatal conductance resulting in reduced carbon gain and unnecessarily high water loss.
DOI: 10.6084/m9.figshare.27992600.v1
title: Decline in stomatal conductance is the primary reason for low photosynthesis in veteran pedunculate oak trees

description: Veteran trees are important elements in forests, urban and suburban areas and represent part of our cultural heritage. However, increasing age also brings a reduction in vitality. Information on tree physiological vitality can be gained by examining ecophysiological traits, such as photosynthesis, stomatal conductance, and leaf water potential. Here, we assess the effects of age on photosynthesis and water status of 600-year-old pedunculate oak (<i>Quercus robur</i>) by comparing them with neighbouring 25-year-old trees. While gas exchange measurements indicated lowered photosynthesis in old trees, maximum rates of Rubisco carboxylation and electron transport, along with day respiration, were similar to younger trees, suggesting that biochemical limitations to photosynthesis were not the reason. Moreover, while there was no difference in light-adapted and dark-adapted chlorophyll fluorescence between old and young trees, stomatal conductance (under unlimited soil water availability) was lower, indicating increased stomatal limitations to photosynthesis in veteran trees. On the other hand, high water potential during mild summer drought conditions indicated better access to soil water in old trees, while stomatal conductance in old trees was higher than in young trees at night. A reduced ability to open and close stomata may be a reason for the observed decline in veteran tree vitality, with a lowered ability to regulate stomatal conductance resulting in reduced carbon gain and unnecessarily high water loss.
DOI: 10.5517/ccdc.csd.cc2gpt88
title: CCDC 2285080: Experimental Crystal Structure Determination

description: Related Article: Panjie Hu, Lingfei Hu, Xiao-Xi Li, Mengxiao Pan, Gang Lu, Xingwei Li|2023|Angew.Chem.,Int.Ed.|63|e202312923|doi:10.1002/anie.202312923
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gptbb
title: CCDC 2285082: Experimental Crystal Structure Determination

description: Related Article: Panjie Hu, Lingfei Hu, Xiao-Xi Li, Mengxiao Pan, Gang Lu, Xingwei Li|2023|Angew.Chem.,Int.Ed.|63|e202312923|doi:10.1002/anie.202312923
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gptcc
title: CCDC 2285083: Experimental Crystal Structure Determination

description: Related Article: Panjie Hu, Lingfei Hu, Xiao-Xi Li, Mengxiao Pan, Gang Lu, Xingwei Li|2023|Angew.Chem.,Int.Ed.|63|e202312923|doi:10.1002/anie.202312923
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gptdd
title: CCDC 2285084: Experimental Crystal Structure Determination

description: Related Article: Panjie Hu, Lingfei Hu, Xiao-Xi Li, Mengxiao Pan, Gang Lu, Xingwei Li|2023|Angew.Chem.,Int.Ed.|63|e202312923|doi:10.1002/anie.202312923
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.jeddbm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Halichoeres sazimai Luiz, Ferreira & Rocha, 2009",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026280-241126133413365/datasets/export for details.
DOI: 10.5284/1124858
title: Images and Site Records from an Archaeological Watching Brief at Waterloo Kiln, Swinton, Rotherham, South Yorkshire, February 2022

description: This collection comprises images and site records from an archaeological monitoring (watching brief) at Waterloo Kiln, Swinton, Rotherham, South Yorkshire. This work was undertaken by Network Archaeology in February 2022 during the clearance of the interior of the kiln and the cleaning of the kiln floor. The cleaning of the floor revealed four intrusions into the brickwork. Glass from one of the deposits filling these intrusions has been dated to the first half of the twentieth century, suggesting that holes within the floor were filled in during this period. It is likely that all the recorded deposits date to a similar period, post-dating the use of the kiln and relate to its use as a dwelling or later as an isolation hospital.
DOI: 10.15468/dl.92my98
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brama japonica Hilgendorf, 1878",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 43 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026282-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.1463379
title: Discovering object affordances through vision - Experiment 1

description: Audiovisual, audio, and text files of Experiment 1 of the "A multimodal dataset of spontaneous speech and movement production on object affordances."
DOI: 10.6084/m9.figshare.1463380
title: Discovering object affordances through vision - Experiment 2

description: Audiovisual, audio, and text files of Experiment 2 of the "A multimodal dataset of spontaneous speech and movement production on object affordances."
DOI: 10.6084/m9.figshare.1556177
title: Australian Bird Data Version 1 csv data file

description: A csv file of attributes of all Australian bird species and subspecies.
DOI: 10.6084/m9.figshare.1556178
title: Australian Bird Data Version 1 Excel file of data, metadata and references

description: An Excel database of attributes of all Australian bird species and subspecies, with associated metadata and references.
DOI: 10.6084/m9.figshare.1558258
title: ELISA measurements for "Multi-omic profiles of human non-alcoholic fatty liver disease tissue highlight heterogeneity in disease phenotype"

description: ELISA measurements from plasma samples were carried out using the Ciraplex® platform (Aushon Biosystems, Billerica, MA, US). Commercial assays were purchased and measurements were carried out according to instructions provided by the manufacturer. The following 29 targets were analyzed either as single-plex assays or as multiplex assay: hFGFb; hGROa; hLIF;hIFNg; hIL1b; IL4; IL5; hIL6; hIL10; hIL12p70; hIL13; hTNFa; hI309; hIL8; hIP10; hMCP4; hMIP1a; hMIP1b; hCRP; hLeptin; hPAIactive; hResistin; hIGFBP1; hIGFBP3; hIGFBP2; hMIF; hApoA1; hCRP; hAcrp30.
DOI: 10.6084/m9.figshare.1558258.v1
title: ELISA measurements for "Multi-omic profiles of human non-alcoholic fatty liver disease tissue highlight heterogeneity in disease phenotype"

description: ELISA measurements from plasma samples were carried out using the Ciraplex® platform (Aushon Biosystems, Billerica, MA, US). Commercial assays were purchased and measurements were carried out according to instructions provided by the manufacturer. The following 29 targets were analyzed either as single-plex assays or as multiplex assay: hFGFb; hGROa; hLIF;hIFNg; hIL1b; IL4; IL5; hIL6; hIL10; hIL12p70; hIL13; hTNFa; hI309; hIL8; hIP10; hMCP4; hMIP1a; hMIP1b; hCRP; hLeptin; hPAIactive; hResistin; hIGFBP1; hIGFBP3; hIGFBP2; hMIF; hApoA1; hCRP; hAcrp30.
DOI: 10.6084/m9.figshare.1605228
title: BALF free lung cell count and enzymatic activity

description: The file contains free lung cell counts and BALF enzymatic measurements. Briefly, it has the animal number information on the first row and the exposure group information in the second row. Then, the first column has the name of the parameter measured.
DOI: 10.6084/m9.figshare.1605229
title: BALF analytes

description: For each analyte and each of the six batches of measurements, and in addition to the concentrations measured in the various supernatants, Myriad RBM provided the least detectable dose (LDD) and lower limit of quantification (LLOQ), which were not necessarily constant across the batches. The LDD was determined as the mean + 3 standard deviations of 20 blank readings, while the LLOQ was the lowest concentration of an analyte that could be reliably detected in a sample and at which the total error met the laboratory requirements for accuracy. In this case, LLOQ was the concentration of an analyte at which the coefficient of variation of replicate standard samples was 30%. Given that these definitions of LDD and LLOQ are independent, sometimes LDD &gt; LLOQ and vice versa.
In the original data reporting from Myriad RBM, not all measurements were reported as values. Some were instead reported as ‘quantity not sufficient for testing’ (QNS). Additionally, some myoglobin (only) measurements were reported as ‘&gt;xxx’, where xxx represented the upper limit of quantification. Finally, for the first four shipments, some values were indicated as ‘’, indicating that they could not be measured on the standard curve. Values below LDD or LLOQ were reported as values in these first four shipments. Myriad RBM reporting changed from shipment 5. ‘’ values and values below LLOQ were reported as ‘LLOQ, it was reported as a value.
To accommodate these variations in reporting between shipments, the following decisions were made for our internal data analysis:
QNS values were considered to be missing.
Values ‘&gt;xxx’ were substituted by 1.1 * xxx.
 or 
Values 
Other values were left unchanged for data analysis.
DOI: 10.6084/m9.figshare.1605230
title: Hematology Raw Data

description: The file contains hematology measurements. Briefly, it has the animal number information on the first row and the exposure group information in the second row. Then, the first column has the name of the hematology parameter measured.