cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11884284
title: Supplementary Tables 6-7-8

description: Differential expression of Non-Healers vs Healers (sheet 1, table 6), Healers vs DM (sheet 2, table 7) and Non-Healers vs DM (sheet 3, table 8) pairwise comparisons from forearm biopsies skin. The table is showing genes ranked in ascending order by log2FoldChange, where negative values denote down- and positive up-regulation with false discovery rate (FDR) &lt; 0.05 as computed with DEseq2.Reference: 10.2337/db20-0188
DOI: 10.6084/m9.figshare.11884284.v1
title: Supplementary Tables 6-7-8

description: Differential expression of Non-Healers vs Healers (sheet 1, table 6), Healers vs DM (sheet 2, table 7) and Non-Healers vs DM (sheet 3, table 8) pairwise comparisons from forearm biopsies skin. The table is showing genes ranked in ascending order by log2FoldChange, where negative values denote down- and positive up-regulation with false discovery rate (FDR) &lt; 0.05 as computed with DEseq2.Reference: 10.2337/db20-0188
DOI: 10.6084/m9.figshare.11882799
title: NEON Teaching Data: Full Hyperspectral Image from SJER

description: This is a full 1km by 1km tile of NEON AOP imaging spectrometer hyperspectral data from the San Joaquin Experimental Range in the central valley of California, USA. This dataset contains imagery at 1m spatial resolution, and ~5nm spectral resolution, with a total of 426 bands. These data were gathered in March, 2019. All NEON AOP missions are flown at or near peak 'greenness,' which comes fairly early in the year for this region. This dataset is uploaded here for teaching purposes, in particular with the tutorials found on https://www.neonscience.org/resources/data-tutorials. This particular tile makes for a good teaching example because this image captures a large school complex that is under construction, which means that it contains a wide variety of recognizable land cover types. Spectral signatures and indices derived from these surfaces make for good teaching examples because of their strong differences between land cover types. However, this file is rather large (~622Mb), so users may consider using our smaller (~50Mb) example subsets derived from this dataset. <br>Citation:National Ecological Observatory Network. 2020. Data Product DP3.30006.001, Spectrometer orthorectified surface directional reflectance - mosaic. Provisional data downloaded from http://data.neonscience.org on February 21, 2020. Battelle, Boulder, CO, USA NEON. 2020.<br>
DOI: 10.6084/m9.figshare.11882790
title: Raw BLASTn results for 2,007 miRNAs identified in Viola pubescens pre-chasmogamous and pre-cleistogamous meristematic tissue via the miRDeep2 algorithm

description: Contained herein are the raw results of a Blastn "short" analysis that identified potential homologs of 2,007 novel miRNAs (with significant randfold p-values) that were identified in pre-chasmogamous and pre-cleistogamous meristem tissue of <i>Viola pubescens</i> via the miRDeep2 algorithm. For BLASTn analysis, novel <i>V. pubescens</i> miRNAs were queried against the miRBase (v.22) database.<br>
DOI: 10.6084/m9.figshare.11882790.v1
title: Raw BLASTn results for 2,007 miRNAs identified in Viola pubescens pre-chasmogamous and pre-cleistogamous meristematic tissue via the miRDeep2 algorithm

description: Contained herein are the raw results of a Blastn "short" analysis that identified potential homologs of 2,007 novel miRNAs (with significant randfold p-values) that were identified in pre-chasmogamous and pre-cleistogamous meristem tissue of <i>Viola pubescens</i> via the miRDeep2 algorithm. For BLASTn analysis, novel <i>V. pubescens</i> miRNAs were queried against the miRBase (v.22) database.<br>
DOI: 10.6084/m9.figshare.11882760
title: Data for "Near-ideal spontaneous photon sources in silicon quantum photonics"

description: Data for the paper "Near-ideal spontaneous photon sources in silicon quantum photonics" by Stefano Paesani et al.
DOI: 10.6084/m9.figshare.11882748
title: Unfiltered miRDeep2 Results

description: Contained herein are the raw data from miRDeep2 including novel miRNAs identified in pre-chasmogamous and pre-cleistogamous meristematic tissue of the North American violet <i>Viola pubescens</i>.
DOI: 10.6084/m9.figshare.11882748.v1
title: Unfiltered miRDeep2 Results

description: Contained herein are the raw data from miRDeep2 including novel miRNAs identified in pre-chasmogamous and pre-cleistogamous meristematic tissue of the North American violet <i>Viola pubescens</i>.
DOI: 10.6084/m9.figshare.11882601
title: Supplemental Table S3 all microarray.xlsx

description: A microarray data set outlining the response of a resistant (Stigg) and susceptible (Gallant) cultivar to infection from the fungal pathogen <i>Zymoseptoria tritici</i>.
DOI: 10.6084/m9.figshare.11882604
title: Wind and Temperature records. March-April 2018. Puerto Madryn. Chubut. Argentina

description: Wind and Temperature records. March-April 2018. Puerto Madryn. Chubut. Argentina
DOI: 10.6084/m9.figshare.11882604.v2
title: Wind and Temperature records. March-April 2018. Puerto Madryn. Chubut. Argentina

description: Wind and Temperature records. March-April 2018. Puerto Madryn. Chubut. Argentina
DOI: 10.6084/m9.figshare.11882604.v1
title: Wind and Temperature records. March-April 2018. Puerto Madryn. Chubut. Argentina

description: Wind and Temperature records. March-April 2018. Puerto Madryn. Chubut. Argentina
DOI: 10.6084/m9.figshare.11882400
title: Plant species presence-absence data and topography data from barrancos in La Palma, Canary Islands

description: These data sets contain plant species and topographic information for 2x11m plots located within barrancos on the island of La Palma, Canary Islands.<br>Information on how data were collected and analysed is available in the associated publication: <b>Cutts, V., Katal, N., Löwer, C., Algar, A. C, Steinbauer, M. J, Irl, S. D, et al. (2019). The effect of small-scale topography on patterns of endemism within islands. <em>Frontiers of Biogeography</em>, 11(4). </b><br>The species data contains presence-absence data per plot. It also denotes if a species is an archipelago endemic (AE), single-island endemic (SIE) or invasive (I). Species that do not have an accurate ID are labelled 'Uknown_#' or labelled with the known genera followed by 'spec'. <br>The plot data contains barranco depth (by four different measures, in metres), height to width ratio and altitude for each plot. GPS points are available for most plots, with the exception of plots in barranco 2 and barranco 3 (GPS points were taken incorrectly during sampling). <br><br>
DOI: 10.6084/m9.figshare.11882400.v1
title: Plant species presence-absence data and topography data from barrancos in La Palma, Canary Islands

description: These data sets contain plant species and topographic information for 2x11m plots located within barrancos on the island of La Palma, Canary Islands.<br>Information on how data were collected and analysed is available in the associated publication: <b>Cutts, V., Katal, N., Löwer, C., Algar, A. C, Steinbauer, M. J, Irl, S. D, et al. (2019). The effect of small-scale topography on patterns of endemism within islands. <em>Frontiers of Biogeography</em>, 11(4). </b><br>The species data contains presence-absence data per plot. It also denotes if a species is an archipelago endemic (AE), single-island endemic (SIE) or invasive (I). Species that do not have an accurate ID are labelled 'Uknown_#' or labelled with the known genera followed by 'spec'. <br>The plot data contains barranco depth (by four different measures, in metres), height to width ratio and altitude for each plot. GPS points are available for most plots, with the exception of plots in barranco 2 and barranco 3 (GPS points were taken incorrectly during sampling). <br><br>
DOI: 10.6084/m9.figshare.11882217
title: Resurrection of the Plagiothecium longisetum Lindb. and proposal of the new species – P. angusticellum

description: The alignment file in nexus format of:(1) ITS gene matrix including ITS1 (partial) - 5.8 S gDNA - ITS2 (partial) of Plagiothecium species and simmilar hypnalean mosses (file PITScor.nex);(2) ITS-rps4-rpl16 concatenated matrix of Plagiothecium species (file PITSrpl4rps16cor_nex);<br>Tree files, visualized by FigTree software, from:(3) Maximum Likelyhood analysis of ITS gene matrix (file Plagio_ITScor.txt.contree);(4) Maximum Likelyhood analysis of ITS-rps4-rpl16 matrix (file Plagio_Matrixcor.txt.contree);(5) Bayesian Inference analysis of ITS gene matrix (file PITScor.nex.con.tre);(6) Bayesian Inference analysis of ITS-rps4-rpl16 matrix (file PITSrps4rpl16cor_nex.nex.con.tre).
DOI: 10.6084/m9.figshare.11882217.v1
title: Resurrection of the Plagiothecium longisetum Lindb. and proposal of the new species – P. angusticellum

description: The alignment file in nexus format of:(1) ITS gene matrix including ITS1 (partial) - 5.8 S gDNA - ITS2 (partial) of Plagiothecium species and simmilar hypnalean mosses (file PITScor.nex);(2) ITS-rps4-rpl16 concatenated matrix of Plagiothecium species (file PITSrpl4rps16cor_nex);<br>Tree files, visualized by FigTree software, from:(3) Maximum Likelyhood analysis of ITS gene matrix (file Plagio_ITScor.txt.contree);(4) Maximum Likelyhood analysis of ITS-rps4-rpl16 matrix (file Plagio_Matrixcor.txt.contree);(5) Bayesian Inference analysis of ITS gene matrix (file PITScor.nex.con.tre);(6) Bayesian Inference analysis of ITS-rps4-rpl16 matrix (file PITSrps4rpl16cor_nex.nex.con.tre).
DOI: 10.6084/m9.figshare.11881773
title: Cryophage_flex_genes

description: Cryophage.gff - gff annotations of cryophage reconstructionsCryophage_MGIs.tar.gz - Cryophage MGI variants in each metagenomeCryophage_variants.fasta - Complete genomes of all cryophage variants. <br>Mu-like-phage_variants.fasta - complete genomesMu_MGIs_fasta.tar.gz - MGI variants for Mu-like phageMu-like.gffs - gff annotation files for Mu-like phage variants<br><br>
DOI: 10.6084/m9.figshare.11881713
title: Sample Input Data (TRIP tool)

description: This entry includes the IMGT High-VQuest output files that were used as input to the TRIP tool regarding<br>1. The scalability experiments (IDs are BC23-OSR052411, BC23-OSR052411-OSR081811, OSR052311-OSR081811 and OSR052411-OSR052311-OSR081811). The corresponding raw FASTQ files are available here (https://www.ebi.ac.uk/ena/browser/view/PRJEB29674).<br>2. The comparison experiments (IDs are T3304, T3396 and T3397). Raw TR sequence data can be found under accession number SRR3737053 in GenBank sequence database (www.ncbi.nlm.nih.gov/genbank/).<br>
DOI: 10.6084/m9.figshare.11881704
title: PmiRtaget database full data

description: aaaa
DOI: 10.6084/m9.figshare.11881713.v1
title: Sample Input Data (TRIP tool)

description: This entry includes the IMGT High-VQuest output files that were used as input to the TRIP tool regarding<br>1. The scalability experiments (IDs are BC23-OSR052411, BC23-OSR052411-OSR081811, OSR052311-OSR081811 and OSR052411-OSR052311-OSR081811). The corresponding raw FASTQ files are available here (https://www.ebi.ac.uk/ena/browser/view/PRJEB29674).<br>2. The comparison experiments (IDs are T3304, T3396 and T3397). Raw TR sequence data can be found under accession number SRR3737053 in GenBank sequence database (www.ncbi.nlm.nih.gov/genbank/).<br>
DOI: 10.6084/m9.figshare.11881656
title: Chloroplast genome assemblies and annotations for Erysimum species

description: Here we present the chloroplast genomes and their annotations for <i>Erysimum</i> <i>bastetanum</i> (populations: Ebt01, Ebt12, Ebt13, Ebt22), <i>Erysimum popovii</i> (populations: Ep16, Ep20, Ep27), <i>E. lagascae</i> (population Ela07), and <i>E. fitzii</i> (population Ef01).
DOI: 10.6084/m9.figshare.11881704.v2
title: PmiRtaget database full data

description: aaaa
DOI: 10.6084/m9.figshare.11881704.v1
title: PmiRtaget database full data

description: MicroRNAs (miRNAs) are ~22 nt small non-coding RNA segments that are widely involved in the regulation of gene expression. Accumulating evidences show that miRNAs not only inhibit the expression of some targeted genes but also promote that of some targeted genes in specific conditions. Over the past decades, many miRNA-target databases have been developed from computational prediction and/or experimental validation perspectives. However, there is no database available to systematically collect positive miRNA-target associations that are essential in deciphering the miRNA regulation mechanism. To promote the miRNA study, we developed a new database: PmiRtarbase that acquires validated positive miRNA-target interactions by mining published literature. It includes 267 curated associations between 98 miRNAs and 160 genes in 8 species from 110 studies and summarizes the conditions and detailed descriptions of the miRNA-target associations. We also constructed an omnibus repository named PmiRtarbase, a user-friendly interface to conveniently search and download all related entries. This elaborate database aims to serve as a beneficial resource for studying the miRNA positive regulation mechanism and miRNA-based therapeutics.
DOI: 10.6084/m9.figshare.11881617
title: GWAS for milk traits in Murciano-Granadina goats

description: <b>Phenotypes and genotypes of Murciano-Granadina goats</b>
DOI: 10.6084/m9.figshare.11881656.v1
title: Chloroplast genome and annotations from Erysimum species

description: Here we present the chloroplast genomes and their annotations for <i>Erysimum</i> <i>bastetanum</i> (populations: Ebt01, Ebt12, Ebt13, Ebt22), <i>Erysimum popovii</i> (populations: Ep16, Ep20, Ep27), <i>E. lagascae</i> (population Ela07), and <i>E. fitzii</i> (population Ef01).
DOI: 10.6084/m9.figshare.11881656.v2
title: Chloroplast genome and annotations for Erysimum species

description: Here we present the chloroplast genomes and their annotations for <i>Erysimum</i> <i>bastetanum</i> (populations: Ebt01, Ebt12, Ebt13, Ebt22), <i>Erysimum popovii</i> (populations: Ep16, Ep20, Ep27), <i>E. lagascae</i> (population Ela07), and <i>E. fitzii</i> (population Ef01).
DOI: 10.6084/m9.figshare.11881617.v1
title: Analyzing the genomic and transcriptomic architecture of milk traits in Murciano-Granadina goats

description: <b>Phenotypes and genotypes of Murciano-Granadina goats</b>
DOI: 10.21954/ou.rd.11881470
title: Aram Dorsum, Mars: decameter-scale polygon survey results

description: This is a shapefile containing the locations of polygonal fractures, ridges and other similar forms in the Aram Dorsum area of Mars. The shapefiles are classified into the following types:narrow (polygonal fractures with trough-like margins ~ 1 m wide)pos (polygonal fractures with ridge-like margins ~ 1 m wide)wide (somewhat discontinuous polygonal fractures with flat-floored, trough-like margins ~ 1-3 m wide)vein (criss-crossing positive relief forms with curvilinear to rectilinear patterns, ridges arer &lt; 1 m wide)tiny (meter-scale polygonal or mound like forms)<b></b><i></i><sub></sub><sup></sup><b></b><i></i><sub></sub><sup></sup><br>
DOI: 10.21954/ou.rd.11881470.v1
title: Aram Dorsum, Mars: decameter-scale polygon survey results

description: This is a shapefile containing the locations of polygonal fractures, ridges and other similar forms in the Aram Dorsum area of Mars. The shapefiles are classified into the following types:narrow (polygonal fractures with trough-like margins ~ 1 m wide)pos (polygonal fractures with ridge-like margins ~ 1 m wide)wide (somewhat discontinuous polygonal fractures with flat-floored, trough-like margins ~ 1-3 m wide)vein (criss-crossing positive relief forms with curvilinear to rectilinear patterns, ridges arer &lt; 1 m wide)tiny (meter-scale polygonal or mound like forms)<b></b><i></i><sub></sub><sup></sup><b></b><i></i><sub></sub><sup></sup><br>
DOI: 10.6084/m9.figshare.11881449
title: Digital competences in higher education data set

description: Item codification from the research: <b>Are digital competences important in higher education education? A comparative study among Spanish and Latin American students</b>
DOI: 10.6084/m9.figshare.11881440
title: DRE diversity data

description: These data are diversity responses to three treatments over four years of vegetation sampling. Note SLA and height were only measured in 2014.
DOI: 10.6084/m9.figshare.11881449.v1
title: Item codification

description: Item codification from the research: <b>Smart devices fostering smart learning education: A comparative study among Spanish and Latin American higher education students</b>
DOI: 10.6084/m9.figshare.11881419
title: Chloroplast genome resources for Erysimum species

description: Here we present chloroplast genome resources for <i>Erysimum</i> <i>bastetanum</i> (populations: Ebt01, Ebt12, Ebt13, Ebt22), <i>Erysimum popovii</i> (populations: Ep16, Ep20, Ep27), <i>E. lagascae</i> (population Ela07), and <i>E. fitzii</i> (population Ef01). We present for each population different files: trn's, rrn's, mrn's, genes, trna validation (tRNAscan and ARAGORN results), and annotation report files.
DOI: 10.6084/m9.figshare.11881419.v2
title: Chloroplast genome resources for Erysimum species

description: Here we present chloroplast genome resources for <i>Erysimum</i> <i>bastetanum</i> (populations: Ebt01, Ebt12, Ebt13, Ebt22), <i>Erysimum popovii</i> (populations: Ep16, Ep20, Ep27), <i>E. lagascae</i> (population Ela07), and <i>E. fitzii</i> (population Ef01). We present for each population different files: trn's, rrn's, mrn's, genes, trna validation (tRNAscan and ARAGORN results), and annotation report files.
DOI: 10.6084/m9.figshare.11881419.v1
title: Chloroplast genome resources for Erysimum species

description: Here we present chloroplast genome resources for <i>Erysimum</i> <i>bastetanum</i> (populations: Ebt01, Ebt12, Ebt13, Ebt22), <i>Erysimum popovii</i> (populations: Ep16, Ep20, Ep27), <i>E. lagascae</i> (population Ela07), and <i>E. fitzii</i> (population Ef01). We present for each population different files: cp genome fasta files, gff annotation results, trn's, rrn's, mrn's, genes, trna validation (tRNAscan and ARAGORN results), and annotation report files.
DOI: 10.6084/m9.figshare.11881332.v1
title: Dataset for Lower Limb Prosthesis

description: Dataset of multiple heterogeneous sensors for lower limb prosthesis
DOI: 10.6084/m9.figshare.11881332.v2
title: Dataset for Lower Limb Prosthesis

description: Dataset of multiple heterogeneous sensors for lower limb prosthesis
DOI: 10.21954/ou.rd.11881278
title: Aram Dorsum CTX Mosaic mapping basemap

description: This is a Mosaic of 6 m/pixel NASA CTX image data used as the basemap for the Aram Dorsum study Area mapping
DOI: 10.21954/ou.rd.11881278.v1
title: Aram Dorsum CTX Mosaic mapping basemap

description: This is a Mosaic of 6 m/pixel NASA CTX image data used as the basemap for the Aram Dorsum study Area mapping
DOI: 10.6084/m9.figshare.11881257
title: Power of Politics

description: Data for the paper Power of Politics <br>
DOI: 10.6084/m9.figshare.11881221
title: Dataset: Ministers in Argentina and Brazil (1983-2016)

description: Goal: We compared two countries, Brazil and Argentina, in order to identify similarities and differences in their respective selection and appointment processes for State ministers. This comparison is particularly interesting because, as several authors have shown, unlike Brazil, Argentina has no coalition presidentialism, at least when it comes to ministerial selection. Hence, the comparison could reveal important singularities as to how both presidential regimes form their government team.
DOI: 10.6084/m9.figshare.11881224
title: Arousing Autonomy

description: Data for the paper Arousing Autonomy<br>
DOI: 10.6084/m9.figshare.11881257.v1
title: Power of Politics

description: Data for the paper Power of Politics <br>
DOI: 10.6084/m9.figshare.11881224.v1
title: Arousing Autonomy

description: Data for the paper Arousing Autonomy<br>
DOI: 10.6084/m9.figshare.11881221.v1
title: Untitled Item

description: Goal: We compared two countries, Brazil and Argentina, in order to identify similarities and differences in their respective selection and appointment processes for State ministers. This comparison is particularly interesting because, as several authors have shown, unlike Brazil, Argentina has no coalition presidentialism, at least when it comes to ministerial selection. Hence, the comparison could reveal important singularities as to how both presidential regimes form their government team.
DOI: 10.6084/m9.figshare.11881200
title: Supplementary Material for: Validation of a Revised Knowledge Assessment Tool for Children with Inflammatory Bowel Disease (IBD-KID2)

description: <b><i>Introduction:</i></b> For children with inflammatory bowel disease (IBD), acquired knowledge of their condition and treatment is integral to their adherence and self-management. Assessing their knowledge is vital to identify deficits that may affect disease management. IBD-KID2 is a knowledge assessment tool written for children aged 8 years and over with IBD. <b><i>Objectives:</i></b> In order to examine validity and reliability, a study was carried out using IBD-KID2 in a paediatric IBD population and a number of comparator groups with established levels of IBD knowledge. <b><i>Methods:</i></b> IBD-KID2 was administered to 4 participant groups in Christchurch Hospital, New Zealand: children with IBD (<i>n</i> = 22), children without IBD (<i>n</i> = 20), medical staff (<i>n</i> = 15), and administration staff (<i>n</i> = 15). Between-group differences were tested using ANOVA and pairwise comparisons made with the IBD group. Repeat assessments by the IBD group determined test-retest reliability (<i>n</i> = 21). <b><i>Results:</i></b> The mean age (range) of the paediatric groups were: IBD 13.3 years (8–18), without IBD 11.9 years (8–15). Group mean scores (SD) were: IBD 8.5 (±2.3), without IBD 3.7 (±2.2), medical staff 13.5 (±1.3), administration staff 6.3 (±2.5). Group means were all significantly different to the IBD group. Test-retest mean at baseline (8.4, CI ±2.4) and repeat (9.0, CI ±2.4) were not significant. Intraclass correlation<b><i></i></b>coefficient was 0.82. Internal reliability was 0.85, and item-total statistics showed no improvement by specific item removal. <b><i>Conclusions:</i></b> IBD-KID2 could distinguish between groups with different knowledge levels. Repeat assessment shows comparable scores on retest and good reproducibility. IBD-KID2 is a valid and reliable tool for use in the paediatric IBD population.
DOI: 10.6084/m9.figshare.11881209
title: Genome sequence of Staphylococcus aureus SD2

description: This is a genome sequence (proteins) of a clinical isolate of S. aureus resistant to daptomycin.
DOI: 10.6084/m9.figshare.11881209.v2
title: Genome sequence of Staphylococcus aureus SD2

description: This is a genome sequence (proteins) of a clinical isolate of S. aureus resistant to daptomycin.