cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/sw2m4fv9cb.1
title: Agricultural land use and ensuing eutrophication shape parasitic trematode communities in rural African lakes

description: Dataset (csv and nexus files) used for the analyses presented in the study: "Agricultural land use and ensuing eutrophication shape parasitic trematode communities in rural African lakes".

Context and findings:
Land use is a major driver of biodiversity loss, but impacts differ greatly among taxonomic and functional groups. Parasites are ubiquitous and taxonomically diverse, yet how anthropogenic environmental change affects their communities is scarcely documented. The small, confined catchments of crater lakes in western Uganda provide a unique opportunity to assess the effects of land use on the communities of parasitic trematodes. Together these catchments cover a very large gradient of anthropogenic impact intensity both on land (naturally vegetated catchment to complete agricultural conversion) and in the water (unimpacted to highly eutrophied) whereas variation in natural environmental conditions is limited. Surveying 34 of these lakes, we applied state-of-the-art molecular biomonitoring to genotype all infections by parasitic trematodes in 2385 Bulinus tropicus snails, their regionally most common intermediate host organism. The 45 trematode taxa identified infect a diverse range of final vertebrate hosts and can cause significant public and veterinary health burdens. Using constrained ordinations and generalised additive models, we found that B. tropicus is most abundant in catchments that are partially covered with crop fields, whereas trematode abundance increases with B. tropicus abundance and peaks at intermediate aquatic productivity. Trematode diversity also increases with aquatic productivity but levels off in the most eutrophied lakes. These overall positive relationships likely occur because more productive lakes can sustain a higher abundance and variety of intermediate and final hosts, hence promoting transmission.

Files:
- R_script_trematode_diversity.R : R script to perform the explorative and inferential analyses of the study and create plots and figures.
- ML_concat_tree_renamed3b.nexus: Phylogenetic tree topology of the trematode taxa encountered in the study, used to compute phylogenetic diversity
- all_RD_processed_snails.csv: List of the snail specimens identifiers and lake code where the sample was obtained
- df_Bulinus_analysis4.csv: Dataset of the environmental variables associated with each lake studied (referenced using lake name, code and coordinates)
 -diag_size: Size of each snail and RD-PCR diagnostic for trematode infection
- host_ID.csv: Identification of each trematode taxon and their final hosts
- seqtab_clean_valid_spe.csv: Outputs of high-throughput sequencing pipeline, used to infer trematode infection identity
- table_snail.csv: Specimen ID and species identification of the snail hosts collected
- wannes_data.csv: Additional environmental data for the study lakes
DOI: 10.17632/jd84s4b9pr.1
title: Data underlying the research into Experimental Study on A novel multi epitope chimeric vaccine design that integrates pan genomics and reverse vaccine science, completely changing and identifying the vaccine targets of Brucella

description: This dataset contains experimental data and numerical simulation data of "A novel multi epitope chimeric vaccine design that integrates pan genomics and reverse vaccine science, completely changing and identifying the vaccine targets of Brucella"
DOI: 10.17632/xc322m3cgb.1
title: Applications of GAI Tools in Tourism Industry

description: With recent advancements in large language models, generative AI tools have gained popularity due to their enhanced capabilities in natural language processing. The aim of our study is to evaluate the effectiveness of GAI chatbots in handling tasks related to tourism businesses, particularly in travel planning. To achieve this goal, we conducted an online experiment in September 2024. During this experiment, two travel arrangement tasks were selected and addressed using six different conversational chatbots. Details regarding the chatbot solutions to these tasks can be found here. Further analysis provides valuable insights into the effectiveness of chatbots in supporting travel activities for both organized tourist groups and self-organized travellers. Among the evaluated conversational chatbots, ChatGPT, Claude, and Perplexity AI demonstrated the highest overall performance.
DOI: 10.17632/rptvmypdb3.1
title: LINF_330031400

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/bmxvccv5rk.1
title: LINF_330035300

description: Enoyl-CoA hydratase/isomerase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/6vdnxd4nd7
title: LDHU3_09.1830

description: DNA J-binding protein (JBP1); Leishmania donovani (HU3 strain)
DOI: 10.17632/6vdnxd4nd7.1
title: LDHU3_09.1830

description: DNA J-binding protein (JBP1); Leishmania donovani (HU3 strain)
DOI: 10.17632/9z98kdkpyz.1
title: PM-HIP Mechanical Data Archive

description: This is the mechanical testing data archive from a neutron irradiation campaign of nuclear structural alloys fabricated by powder metallurgy with hot isostatic pressing (PM-HIP). Data in this archive include uniaxial tensile testing data, fractography of selected tensile bars, and nanoindentation. The irradiation campaign was designed to facilitate a direct comparison of PM-HIP to conventional casting or forging. Five common nuclear structural alloys were included in the campaign: 316L stainless steel, SA508 pressure vessel steel, Grade 91 ferritic steel, and Ni-base alloys 625 and 690. Irradiations were carried out in the Advanced Test Reactor (ATR) at Idaho National Laboratory (INL) to target doses of 1 and 3 displacements per atom (dpa) at target temperatures of 300ºC and 400ºC through the DOE Office of Nuclear Energy, Nuclear Science User Facilities (NSUF) project 15-8242.
DOI: 10.17632/kmbhnnxksy.1
title: Leishmania braziliensis (M2904) complete transcripts

description: This dataset contains 900 sequences of transcripts considered complete molecules. These transcripts were generated and sequenced according to the procedure: Iso-Seq™ Template preparation for Sequel® Systems (PacBio). The RNA samples were derived from logarithmic phase promastigotes of the M2904 strain of Leishmania braziliensis. The transcripts represent complete sequences because they had at their 5’-end at least 8 nucleotides derived from the 3’ end of the spliced-leader (SL) sequence, and a poly-A at their 3’-end. These sequence elements were trimmed out.
DOI: 10.15468/dl.fk9a23
title: Occurrence Download

description: A dataset containing 2108 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dolichophis caspius (Gmelin, 1789)"
 ]
}

 The dataset includes 2108 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004337-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/h7czpsnp4z.1
title: Leishmania infantum (JPCM5) complete transcripts

description: This dataset contains 874 sequences of transcripts considered complete molecules. These transcripts were generated and sequenced according to the procedure: Iso-Seq™ Template preparation for Sequel® Systems (PacBio). The RNA samples were derived from logarithmic phase promastigotes of the JPCM5 strain of Leishmania infantum. The transcripts represent complete sequences because they had at their 5’-end at least 8 nucleotides derived from the 3’ end of the spliced-leader (SL) sequence, and a poly-A at their 3’-end. These sequence elements were trimmed out.
DOI: 10.17632/fj7sskjdt7.1
title: Characterization of Tinnitus Through the Analysis of Electroencephalographic Activity

description: Subjective tinnitus is a symptom associated with the perception of a sound without an external source that generates it. Although its origin is due to a hearing impairment, the perception of this is a brain pathology that causes a decrease in the quality of life of people suffering from it, having significant morbidity. There is no cure, and alternative treatments remain uncertain. 
The main objective of the present database was to characterize tinnitus and classify it according to the neuronal electrical response to provide a reliable and replicable accurate measurement that reflected the nature of this symptom. 
The experimental paradigm was tested for objective information (in a control group (GC) of 15 participants and a tinnitus group (GA) of 22 participants) where EEG activity was recorded in two states: (1) basal, where the person remained in a state of rest with open eyes; (2) active where the participant had the task of identifying a sound stimulus, within a sound-tinnitus library, by pressing a key. GA had to identify the sound most similar to personal tinnitus. GC had to identify the 3.5kHz sound.
DOI: 10.17632/fj7sskjdt7.2
title: Characterization of Tinnitus Through the Analysis of Electroencephalographic Activity

description: Subjective tinnitus is a symptom associated with the perception of a sound without an external source that generates it. Although its origin is due to a hearing impairment, the perception of this is a brain pathology that causes a decrease in the quality of life of people suffering from it, having significant morbidity. There is no cure, and alternative treatments remain uncertain. 
The main objective of the present database was to characterize tinnitus and classify it according to the neuronal electrical response to provide a reliable and replicable accurate measurement that reflected the nature of this symptom. 
The experimental paradigm was tested for objective information (in a control group (GC) of 15 participants and a tinnitus group (GA) of 22 participants) where EEG activity was recorded in two states: (1) basal, where the person remained in a state of rest with open eyes; (2) active where the participant had the task of identifying a sound stimulus, within a sound-tinnitus library, by pressing a key. GA had to identify the sound most similar to personal tinnitus. GC had to identify the 3.5kHz sound.
DOI: 10.17632/fj7sskjdt7.4
title: Characterization of Tinnitus Through the Analysis of Electroencephalographic Activity

description: Subjective tinnitus is a symptom associated with the perception of a sound without an external source that generates it. Although its origin is due to a hearing impairment, the perception of this is a brain pathology that causes a decrease in the quality of life of people suffering from it, having significant morbidity. There is no cure, and alternative treatments remain uncertain. 
The main objective of the present database was to characterize tinnitus and classify it according to the neuronal electrical response to provide a reliable and replicable accurate measurement that reflected the nature of this symptom. 
The experimental paradigm was tested for objective information (in a control group (GC) of 15 participants and a tinnitus group (GA) of 22 participants) where EEG activity was recorded in two states: (1) basal, where the person remained in a state of rest with open eyes; (2) active where the participant had the task of identifying a sound stimulus, within a sound-tinnitus library, by pressing a key. GA had to identify the sound most similar to personal tinnitus. GC had to identify the 3.5kHz sound.
DOI: 10.17632/fj7sskjdt7.5
title: Characterization of Tinnitus Through the Analysis of Electroencephalographic Activity

description: Subjective tinnitus is a symptom associated with the perception of a sound without an external source that generates it. Although its origin is due to a hearing impairment, the perception of this is a brain pathology that causes a decrease in the quality of life of people suffering from it, having significant morbidity. There is no cure, and alternative treatments remain uncertain. 
The main objective of the present database was to characterize tinnitus and classify it according to the neuronal electrical response to provide a reliable and replicable accurate measurement that reflected the nature of this symptom. 
The experimental paradigm was tested for objective information (in a control group (GC) of 15 participants and a tinnitus group (GA) of 22 participants) where EEG activity was recorded in two states: (1) basal, where the person remained in a state of rest with open eyes; (2) active where the participant had the task of identifying a sound stimulus, within a sound-tinnitus library, by pressing a key. GA had to identify the sound most similar to personal tinnitus. GC had to identify the 3.5kHz sound.
DOI: 10.17632/fj7sskjdt7.3
title: Characterization of Tinnitus Through the Analysis of Electroencephalographic Activity

description: Subjective tinnitus is a symptom associated with the perception of a sound without an external source that generates it. Although its origin is due to a hearing impairment, the perception of this is a brain pathology that causes a decrease in the quality of life of people suffering from it, having significant morbidity. There is no cure, and alternative treatments remain uncertain. 
The main objective of the present database was to characterize tinnitus and classify it according to the neuronal electrical response to provide a reliable and replicable accurate measurement that reflected the nature of this symptom. 
The experimental paradigm was tested for objective information (in a control group (GC) of 15 participants and a tinnitus group (GA) of 22 participants) where EEG activity was recorded in two states: (1) basal, where the person remained in a state of rest with open eyes; (2) active where the participant had the task of identifying a sound stimulus, within a sound-tinnitus library, by pressing a key. GA had to identify the sound most similar to personal tinnitus. GC had to identify the 3.5kHz sound.
DOI: 10.17632/xyd427tt4g.1
title: Leishmania major (Friedlin) complete transcripts

description: This dataset contains 808 sequences of transcripts considered complete molecules. These transcripts were generated and sequenced according to the procedure: Iso-Seq™ Template preparation for Sequel® Systems (PacBio). The RNA samples were derived from logarithmic phase promastigotes of the Friedlin strain of Leishmania major. The transcripts represent complete sequences because they had at their 5’-end at least 8 nucleotides derived from the 3’ end of the spliced-leader (SL) sequence, and a poly-A at their 3’-end. These sequence elements were trimmed out.
DOI: 10.17632/rn96hp5kw4.3
title: TP53

description: Data repository for the referenced manuscript.

All generated and optimized networks for TCGA and CCLE can be found in the corresponding folders. The input files have been included as a Shiny App .zip file, which combined with the cited GitHub repository below, provide a full Shiny App with GUI to reproduce the results. Results concerning the ML and community detection signatures plus survival data used are provided also in the corresponding folders.
DOI: 10.17632/rvjz3wbz9m.1
title: Human cytomegalovirus degrades DMXL1 to inhibit autophagy, lysosomal acidification and viral assembly

description: Human cytomegalovirus (HCMV) is an important human pathogen and a master regulator of host intrinsic, innate, and adaptive immunity. HCMV hijacks host intracellular compartments to assemble new virions, and lysosomes are essential for this process. We combined a comprehensive proteomic analysis of host proteins targeted for degradation by HCMV with a database of proteins involved in vacuolar acidification. Dmx-like protein 1 (DMXL1) was the only protein that acidifies vacuoles yet is degraded by HCMV.
Systematic comparison of viral deletion mutants revealed that the uncharacterised 7kDa US33A protein is necessary and sufficient for DMXL1 degradation. Functional experiments using cells stably expressing US33A, or infected with adenovirus vectors expressing US33A, or infected with recombinant HCMV deleted for US33A, demonstrated that HCMV degrades DMXL1 to inhibit lysosomal acidification and autophagic cargo degradation. Formation of the viral assembly compartment, which is known to require lysosomes, occurred significantly later in cells infected with US33A-expressing virus, with reduced viral replication. These data thus identify an entirely new viral strategy for cellular remodelling. US33A recruits the E3 ubiquitin ligase Kip1 ubiquitination-promoting complex (KPC) and acts akin to a proteolysis-targeting chimera (PROTAC) to degrade DMXL1. The potential thus exists to employ US33A in novel therapies for viral infection or rheumatic conditions, in which inhibition of lysosome acidification can attenuate disease.
DOI: 10.17632/tf5jv9tnfp.1
title: Scaling data for a scalable parallel clustering algorithm for molecular dynamics

description: Molecular config files on which cluster analysis was done, as well as times taken for doing so with different number of processors.
DOI: 10.17632/bg8ycnngd2.1
title: Geyserite Data El Tatio

description: Meteorological data and water temperatures of near vent splash zone
DOI: 10.17632/jywsy5zz96.1
title: Circulating hematopoietic stem/progenitor cell subsets contribute to human hematopoietic homeostasis

description: In physiological conditions, few circulating hematopoietic stem/progenitor cells (cHSPC) are present in the peripheral blood but their contribution to hematopoietic homeostasis in humans remain unsolved. By integrating advanced immunophenotyping, cellular indexing of transcriptomes and epitopes by sequencing (CITE-seq), functional single-cell assays and integration site (IS) clonal tracking, we unveiled the phenotypic composition, the transcriptional features and the biological role of human cHSPC subpopulations in relationship to their bone marrow (BM) counterpart. We found that cHSPC progressively reduced in cell count over aging and are enriched for primitive, lymphoid and erythroid subpopulations, showing pre-activated transcriptional and functional state. Moreover, cHSPC have low expression of multiple BM-retention molecules, but maintain their homing potential after xenotransplantation. By generating a comprehensive Human Organ-Resident HSPC (HuOR) dataset based on scRNAseq data, we detected organ-specific seeding properties of the distinct trafficking HSPC subpopulations. Of note, circulating multi-lymphoid progenitors (MLP) are primed for seeding the thymus and actively contribute to T-cell production at steady state in patients treated with HSPC-gene therapy (GT). Human clonal tracking data from GT patients also showed that cHSPC connect distant BM niches and participate to steady-state hematopoietic production, with primitive cHSPC having the highest re-circulation capability to travel in and out the BM. Finally, in case of hematopoietic impairment, cHSPC composition reflects the BM-HSPC content and might represent a biomarker of the BM state for clinical and research purposes. Overall, our comprehensive work unveiled fundamental insights into the in vivo dynamics of human HSPC trafficking and its role in sustaining hematopoietic homeostasis.
DOI: 10.17632/42792nbxmb.1
title: Unveiling Spatiotemporal Temperature Distribution at the Skin in Contact with Hot Solid Surfaces

description: The following files contain the raw data to the related paper "Unveiling Spatiotemporal Temperature Distribution at the Skin in Contact with Hot Solid Surfaces."
DOI: 10.17632/fv2g3cpjmn.1
title: OTR, oxytocin and paternal behavior

description: Data obtained from paternal behavior tests, plasma oxytocin concentrations and the presence of OTR in MPOA, BNST, MeA and OB of paternal and aggressive males are shown in the file.
DOI: 10.17632/bggwfsrfrj.1
title: MATLAB Scripts for Acceleration Data Processing and Analysis from SmartRock Sensor

description: This dataset contains four MATLAB scripts designed for the processing, analysis, and visualisation of acceleration data obtained from Smart Rock sensors. These scripts facilitate importing raw data from Excel files, processing it to extract meaningful insights such as frequency spectra, signal peaks, and orientation information. Below is a brief overview of each script:

Retreive_raw_data.m:
The main script responsible for importing raw acceleration and quaternion data from user-selected Excel files. It initiates the data processing pipeline by calling functions to import, visualise, and analyse the data. The script plots the acceleration data along the X, Y, and Z axes and manages quaternion data for further processing, such as conversion to rotation matrices.

importfile.m:
A supporting function specifically designed to import acceleration data from the specified Excel worksheet. It extracts time series data along with acceleration values on three axes (X, Y, Z) and prepares the data for visualisation and analysis in the main script.

frequenzspektrum.m:
This function calculates the frequency spectrum of a given signal using Fast Fourier Transform (FFT). It returns the amplitude and phase spectra, enabling frequency-domain analysis of acceleration signals. This script is often called during the analysis phase for detailed signal processing.

Composite acceleration and signal smooth.m:
This script processes the imported acceleration data by resampling it to equal time intervals, applying low-pass and high-pass filters, detecting peaks in the signal, and performing Fourier Transform to analyse the frequency spectrum. It provides a more detailed analysis of the composite acceleration derived from the X, Y, and Z components.
DOI: 10.17632/y2pwj37nhz.1
title: Mineral analyses and reconstructed bulk xenolith compositions for the Kaapvaal craton

description: EPMA & LA-ICP-MS mineral analyses and reconstructed bulk xenolith compositions
DOI: 10.17632/bmbt8t2ywj.1
title: Weathering trends in the Norian: geochemical and rock magnetic dataset from the Pignola-Abriola Section (Lagonegro Basin, Italy)

description: Table S1. Analytical results of major and trace elements in reference materials (JSd-1, JSd-2, JLs-1, Jdo-1).
Table S2. Rock magnetic parameters from the Pignola-Abriola section: a. IRM (Isothermal Remanent Magnetization and S-ratio); b. IRM Unmix components; c. ARM: Anhysteretic Remanent magnetization; d. Larrasoana: data from Larrasoana et al., 2007; e: NRM (Natural Remanent magnetization); f. Susceptibility; g. Day Plot
Table S3. Geochemical and PCA data for shale samples from the Pignola-Abriola section.
DOI: 10.17632/2zfvbrt2fj.1
title: Interpersonal Styles of the Teacher and Their Relationship with Basic Psychological Needs, Motivation, Engagement, and Disaffection in Mexican Students

description: Database of the project "Interpersonal Styles of the Teacher and Their Relationship with Basic Psychological Needs, Motivation, Engagement, and Disaffection in Mexican Students"