cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/8s0d-ca94
title: Vibrations in Tool-mediated Interactions: Three-Dimensional Acceleration-based Vibrations and Corresponding Videos during Human-Surface Haptic Interactions

description: This is a dataset of 5-second vibration recordings in two different tool-mediated surface interactions. All vibration diata are recorded with an accelerometer in gravitational unit (g) and saved in csv format. Corresponding videos (mp4) are also provided. Please also check the coordinate frame xyz in Dataset.png
DOI: 10.6084/m9.figshare.15085095
title: Lip Filtered Interval Segregated One hot and Labeled Data (4673, 48, 30)

description: Lip filtered, rdkit no charge/no radicals, semantic no charge (no - or +), one hot and labeled and regular SELFIES data with their respective vocabs.<br>
DOI: 10.6084/m9.figshare.15085095.v1
title: Lip Filtered Interval Segregated One hot and Labeled Data (4673, 48, 30)

description: Lip filtered, rdkit no charge/no radicals, semantic no charge (no - or +), one hot and labeled and regular SELFIES data with their respective vocabs.<br>
DOI: 10.5281/zenodo.5148876
title: ezLncPred: PredLnc-GFStack - Models

description: PredLnc-GFStack - Models
DOI: 10.5281/zenodo.5148857
title: ezLncPred: PredLnc-GFStack - Models

description: PredLnc-GFStack - Models
DOI: 10.5281/zenodo.5148524
title: Transformers for Modeling Physical Systems

description: Data set associated with the publication Transformers for Modeling Physical Systems. Transformers are widely used in natural language processing due to their ability to model longer-term dependencies in text. Although these models achieve state-of-the-art performance for many language related tasks, their applicability outside of the natural language processing field has been minimal. In this work, we propose the use of transformer models for the prediction of dynamical systems representative of physical phenomena. This data set includes data in HDF5 files for: Lorenz ODE: lorenz_training_rk.tar.gz lorenz_valid_rk.tar.gz lorenz_test_rk.tar.gz Flow Around a Cylinder: cylinder_training.tar.gz cylinder_valid.tar.gz cylinder_test.tar.gz Gray-Scott Reaction-Diffusion: grayscott_training.tar.gz grayscott_valid.tar.gz grayscott_test.tar.gz Rossler ODE: rossler_training.tar.gz rossler_valid.tar.gz As well as several pretrained embedding models for the Google Collab notebooks on Github: embedding_lorenz_pretrained.pth embedding_cylinder_pretrained.pth embedding_rossler_pretrained.pth See the Github repository for code base: https://github.com/zabaras/transformer-physx/
description: Open an issue on the Github repository if there are any issues, concerns or questions.
DOI: 10.5281/zenodo.5148523
title: Transformers for Modeling Physical Systems

description: Data set associated with the publication Transformers for Modeling Physical Systems. Transformers are widely used in natural language processing due to their ability to model longer-term dependencies in text. Although these models achieve state-of-the-art performance for many language related tasks, their applicability outside of the natural language processing field has been minimal. In this work, we propose the use of transformer models for the prediction of dynamical systems representative of physical phenomena. This data set includes data in HDF5 files for: Lorenz ODE: lorenz_training_rk.tar.gz lorenz_valid_rk.tar.gz lorenz_test_rk.tar.gz Flow Around a Cylinder: cylinder_training.tar.gz cylinder_valid.tar.gz cylinder_test.tar.gz Gray-Scott Reaction-Diffusion: grayscott_training.tar.gz grayscott_valid.tar.gz grayscott_test.tar.gz Rossler ODE: rossler_training.tar.gz rossler_valid.tar.gz As well as several pretrained embedding models for the Google Collab notebooks on Github: embedding_lorenz_pretrained.pth embedding_cylinder_pretrained.pth embedding_rossler_pretrained.pth See the Github repository for code base: https://github.com/zabaras/transformer-physx/
description: Open an issue on the Github repository if there are any issues, concerns or questions.
DOI: 10.21223/jhmuzn/hcstw5
title: Database_Salt Tolerant Bangladesh.tab

description: :unav
DOI: 10.21223/jhmuzn/izjazu
title: DataDictionary_Salt Tolerant Bangladesh.tab

description: :unav
DOI: 10.48329/4c3r-av86
title: CPRD GOLD ONS deaths March 2021

description: Death Registration data contains data from the Office for National Statistics (ONS) and includes information on the official date and causes of death (using ICD codes). Access to ONS Death Registration data is subject to prior protocol approval. Further information is available at https://www.cprd.com/linked-data. Coverage from 2 January 1998 to 16 November 2020.
DOI: 10.5258/soton/d1841
title: Thesis code: Stochastic modelling and projection of age-specific fertility rates

description: This dataset contains R code and Stan files to perform analyses in Chapters 2, 3 and 4 of the PhD thesis entitled 'Stochastic modelling and projection of age-specific fertility rates' awarded by the University of Southampton in 2021. See the readme file for further information.
DOI: 10.48329/aven-n539
title: CPRD GOLD HES APC March 2021

description: HES Admitted Patient Care (HES APC) data contains details of all admissions to, or attendances at English NHS healthcare providers. It includes private patients treated in NHS hospitals, patients resident outside of England and care delivered by treatment centres (including those in the independent sector) funded by the NHS. All NHS healthcare providers in England, including acute hospital trusts, primary care trusts and mental health trusts provide data. HES APC data includes the complete set of hospital episode information (admission and discharge dates, diagnoses (identifying primary diagnosis), specialists seen under and procedures undertaken) for each linked patient with a hospitalisation record. In addition, Augmented care data (intensive and/or high dependency levels of care) and Maternity data are available. Diagnostic data recorded in HES are coded using the International Classification of Diseases version 10 (ICD10) coding frame; procedure information is coded using the UK Office of Population, Census and Surveys classification (OPCS) 4.6. Requests for HES APC data access are subject to prior protocol approval. Further information is available at https://www.cprd.com/linked-data. Coverage from April 1997 to October 2020.
DOI: 10.48329/1qnt-r031
title: CPRD GOLD Small Area data (patient) March 2021

description: Patient postcode linked measures are available for patients in English practices that have consented to participate in the linkage scheme. The latest available patient postcode of residence is mapped to an LSOA boundary. The LSOA of residence then allows linkage to several measures of area level deprivation and a rural-urban classification. These measures can be used as a proxy for socio-demographic and socio-economic data which are generally poorly recorded in the primary care data given they do not directly relate to a patient's care. Access is provided by CPRD subject to protocol approval. Further information is available at https://www.cprd.com/linked-data.
DOI: 10.48329/q0dh-h917
title: CPRD GOLD SGSS March 2021

description: Second Generation Surveillance System (SGSS) is the national laboratory reporting system used in England to capture routine laboratory data on infectious diseases and antimicrobial resistance. The SARS-CoV-2 testing started in UK laboratories on 24/02/2020, with the SGSS data reflecting testing (swab samples, PCR test method) offered to those in hospital and NHS key workers (i.e. Pillar 1). The CPRD-SGSS linked data currently contain positive tests results only. Access to linked SGSS data is subject to prior protocol approval. This dataset is not covered by existing licences, and data can only be released to organisations within the UK/EU/EEA. Further information is available at https://www.cprd.com/linked-data. Coverage from 01/03/2020 to 29/09/2020.
DOI: 10.6084/m9.figshare.14852946.v2
title: Description of data and code for Williams et al "Spatial modulation of dark versus bright stimulus responses in the mouse visual system," Current Biology, 31, 1-8, 2021.

description: This data archive contains all code and data necessary to replicate each main text and supplementary figure and associated statistical comparisons in the following article:<br>Williams, B., Del Rosario, J., Muzzu, T., Peelman, K., Coletta, S., bichler, E. K., Speed, A., Meyer-Baese, L., Saleem, A. B. & Haider, B. (2021). Spatial modulation of dark versus bright stimulus responses in the mouse visual system. Current Biology, 31, 1-8.<br>The data and code is compatible with Matlab 2018 or later.<br>The data archive is organized as self-contained subfolders corresponding to the results found in each main figure (e.g., folder 'F1' for results of Figure 1). Each subfolder contains code that loads the minimally processed data structures for replication of the published figures.<br>Abstract of associated publication:<br>A fundamental task of the visual system is to respond to both increases and decreases of luminance with action potentials (ON and OFF responses). OFF responses are stronger, faster, and more salient than ON responses in primary visual cortex (V1) of both cats and primates, but in ferrets and mice ON responses can be stronger, weaker, or balanced in comparison to OFF responses. These discrepancies could arise from differences in species, experimental techniques, or stimulus properties, particularly retinotopic location in the visual field, as has been speculated; however, the role of retinotopy for ON/OFF dominance has not been systematically tested across multiple scales of neural activity within species. Here, we measured OFF versus ON responses across large portions of visual space with silicon probe and whole-cell patch-clamp recordings in mouse V1 and lateral geniculate nucleus (LGN). We found that OFF responses dominated in the central visual field, whereas ON and OFF responses were more balanced in the periphery. These findings were consistent across local field potential (LFP), spikes, and subthreshold membrane potential in V1, and were aligned with spatial biases in ON and OFF responses in LGN. Our findings reveal that retinotopy may provide a common organizing principle for spatial modulation of OFF versus ON processing in mammalian visual systems.<br>Code repository can be found at https://doi.org/10.6084/m9.figshare.14872143<br>Post created on '02-Jul-2021 17:46:34'
DOI: 10.48329/g915-nk16
title: CPRD GOLD Small Area data (practice) March 2021

description: The general practice postcode linkages are available for all practices in CPRD GOLD and CPRD Aurum and use the general practice postcode which is linked via LSOA, SOA in Northern Ireland and datazone (DZ) in Scotland. The general practice postcode linkage includes several well-known area-based measures of deprivation, of which two (Index of Multiple Deprivation and Carstairs Index) are available at the LSOA level for linkage to CPRD primary care data through the practice postcode. Access is provided by CPRD subject to protocol approval. Further information is available at https://www.cprd.com/linked-data.
DOI: 10.6084/m9.figshare.14872143.v1
title: Figure Code for Williams et al., Current Biology, 2021

description: Code to generate figures and statistics in Williams et al., "Spatial modulation of dark and bright stimulus responses in the mouse visual system," <i>Current Biology</i>, 2021. <br>Code is associated with Project description at DOI : 10.6084/m9.figshare.14852946<br>posted on '16-Jul-2021 14:39:25'
DOI: 10.48329/sg3g-1g05
title: CPRD GOLD CHESS March 2021

description: Public Health England (PHE) established COVID-19 Hospitalisation in England Surveillance System (CHESS) across all NHS Trusts in England on 15/03/2020 to collect epidemiological data on COVID-19 infection in persons requiring hospitalisation and ICU/HDU admission. Trends in hospital and critical care admission rates need to be interpreted in the context of testing recommendations, which changed over time. Access to linked CHESS data is subject to prior protocol approval. This dataset is not covered by existing licences, and data can only be released to organisations within the UK/EU/EEA. Further information is available at https://www.cprd.com/linked-data. Covers admissions to 29/09/2020.
DOI: 10.48329/9e1t-7405
title: CPRD Aurum ONS deaths March 2021

description: Death Registration data contains data from the Office for National Statistics (ONS) and includes information on the official date and causes of death (using ICD codes). Access to ONS Death Registration data is subject to prior protocol approval. Further information is available at https://www.cprd.com/linked-data. Coverage from 2 January 1998 to 16 November 2020.
DOI: 10.48329/14gk-m942
title: CPRD Aurum HES APC March 2021

description: HES Admitted Patient Care (HES APC) data contains details of all admissions to, or attendances at English NHS healthcare providers. It includes private patients treated in NHS hospitals, patients resident outside of England and care delivered by treatment centres (including those in the independent sector) funded by the NHS. All NHS healthcare providers in England, including acute hospital trusts, primary care trusts and mental health trusts provide data. HES APC data includes the complete set of hospital episode information (admission and discharge dates, diagnoses (identifying primary diagnosis), specialists seen under and procedures undertaken) for each linked patient with a hospitalisation record. In addition, Augmented care data (intensive and/or high dependency levels of care) and Maternity data are available. Diagnostic data recorded in HES are coded using the International Classification of Diseases version 10 (ICD10) coding frame; procedure information is coded using the UK Office of Population, Census and Surveys classification (OPCS) 4.6. Requests for HES APC data access are subject to prior protocol approval. Further information is available at https://www.cprd.com/linked-data. Coverage from April 1997 to October 2020.
DOI: 10.48329/n7wz-k681
title: CPRD Aurum Small Area data (patient) March 2021

description: Patient postcode linked measures are available for patients in English practices that have consented to participate in the linkage scheme. The latest available patient postcode of residence is mapped to an LSOA boundary. The LSOA of residence then allows linkage to several measures of area level deprivation and a rural-urban classification. These measures can be used as a proxy for socio-demographic and socio-economic data which are generally poorly recorded in the primary care data given they do not directly relate to a patient's care. Access is provided by CPRD subject to protocol approval. Further information is available at https://www.cprd.com/linked-data.
DOI: 10.48329/3jj1-4q52
title: CPRD Aurum SGSS March 2021

description: Second Generation Surveillance System (SGSS) is the national laboratory reporting system used in England to capture routine laboratory data on infectious diseases and antimicrobial resistance. The SARS-CoV-2 testing started in UK laboratories on 24/02/2020, with the SGSS data reflecting testing (swab samples, PCR test method) offered to those in hospital and NHS key workers (i.e. Pillar 1). The CPRD-SGSS linked data currently contain positive tests results only. Access to linked SGSS data is subject to prior protocol approval. This dataset is not covered by existing licences, and data can only be released to organisations within the UK/EU/EEA. Further information is available at https://www.cprd.com/linked-data. Coverage from 01/03/2020 to 29/09/2020.
DOI: 10.6084/m9.figshare.14546920
title: What’s in a wine? – A spot check of the integrity of European wine sold in China based on anthocyanin composition, stable isotope and glycerol impurity analysis

description: The international wine market has been repeatedly hit by cases of fraud in recent decades. While several studies attested a special vulnerability of the fast growing wine business in China, reports on chemical analyses of commercial wine samples are rare. We examined 50 predominantly red wines with European labelling, which were purchased on the Chinese market, for fraud-relevant parameters. More than 20% of the tested samples revealed anomalies in relation to the stable isotope ratios of D/H, <sup>18</sup>O/<sup>16</sup>O and <sup>13</sup>C/<sup>12</sup>C, contents of technical glycerol by-products or anthocyanin composition. These results strongly suggested watering of the wines, chaptalisation, glycerol addition or the use of non-<i>Vitis</i> anthocyanin sources, respectively. Some of these samples also showed suspicious spelling errors or other irregularities in the labelling, but the majority appeared genuine to the eye. Hence, this spot check demonstrates the importance of chemical authenticity analysis of market samples in order to detect fraudulent products. Moreover, we used the same sample set for an evaluation of the Chinese standard method for carbon stable isotope determination of wine ethanol in comparison to the current OIV (International Organisation of Vine and Wine) standard method. The results of a Bland-Altman analysis indicated that the methods can be applied interchangeably. As the two methods differ in their workflow and in the requested equipment, this might eventually enable more laboratories to perform <sup>13</sup>C/<sup>12</sup>C analysis of wine and spirits.
DOI: 10.6084/m9.figshare.14720744.v1
title: Short targeting multiplex PCR assay to detect and discriminate beef, buffalo, chicken, duck, goat, sheep and pork DNA in food products

description: Food fraud is a global problem raising increased concerns during the past decades and food authenticity is now a burning issue. Beef, buffalo, chicken, duck, goat, sheep, and pork are heavily consumed meats bearing nutritional, economic and cultural/religious importance and are often found to be adulterated in raw and processed states. To authenticate these species, we developed and validated a highly specific multiplex (heptaplex) PCR assay targeting short length amplicons (73–263 bp) using seven pairs of species-specific primer sets targeting mitochondrial cytochrome b (cytb) and NADH dehydrogenase subunit 5 (ND5) genes. Specificity checking (<i>in silico</i> and <i>in vitro</i>) against 25 non-target species revealed no cross-species amplification. The developed multiplex assay was validated with various adulterated and heat-treated (boiled, microwaved and autoclaved) meatball products and were found to show high sensitivity and stability under all processing conditions. The assay was sensitive enough to detect 0.01–0.005 ng of DNA from raw meat and 0.5% (w/w) adulterated meat in mixed matrices. A market survey revealed mislabelling of 95% beef and 15% chicken products while pork products were found pure. Given some advantageous features including short sizes of amplicons, exceptional stability and superior sensitivity, the developed assay could be conveniently used for discriminatory detection of target species with a variety of raw meat as well as processed meat products undergoing extreme processing treatments.
DOI: 10.6084/m9.figshare.14720744
title: Short targeting multiplex PCR assay to detect and discriminate beef, buffalo, chicken, duck, goat, sheep and pork DNA in food products

description: Food fraud is a global problem raising increased concerns during the past decades and food authenticity is now a burning issue. Beef, buffalo, chicken, duck, goat, sheep, and pork are heavily consumed meats bearing nutritional, economic and cultural/religious importance and are often found to be adulterated in raw and processed states. To authenticate these species, we developed and validated a highly specific multiplex (heptaplex) PCR assay targeting short length amplicons (73–263 bp) using seven pairs of species-specific primer sets targeting mitochondrial cytochrome b (cytb) and NADH dehydrogenase subunit 5 (ND5) genes. Specificity checking (<i>in silico</i> and <i>in vitro</i>) against 25 non-target species revealed no cross-species amplification. The developed multiplex assay was validated with various adulterated and heat-treated (boiled, microwaved and autoclaved) meatball products and were found to show high sensitivity and stability under all processing conditions. The assay was sensitive enough to detect 0.01–0.005 ng of DNA from raw meat and 0.5% (w/w) adulterated meat in mixed matrices. A market survey revealed mislabelling of 95% beef and 15% chicken products while pork products were found pure. Given some advantageous features including short sizes of amplicons, exceptional stability and superior sensitivity, the developed assay could be conveniently used for discriminatory detection of target species with a variety of raw meat as well as processed meat products undergoing extreme processing treatments.
DOI: 10.6084/m9.figshare.14546920.v1
title: What’s in a wine? – A spot check of the integrity of European wine sold in China based on anthocyanin composition, stable isotope and glycerol impurity analysis

description: The international wine market has been repeatedly hit by cases of fraud in recent decades. While several studies attested a special vulnerability of the fast growing wine business in China, reports on chemical analyses of commercial wine samples are rare. We examined 50 predominantly red wines with European labelling, which were purchased on the Chinese market, for fraud-relevant parameters. More than 20% of the tested samples revealed anomalies in relation to the stable isotope ratios of D/H, <sup>18</sup>O/<sup>16</sup>O and <sup>13</sup>C/<sup>12</sup>C, contents of technical glycerol by-products or anthocyanin composition. These results strongly suggested watering of the wines, chaptalisation, glycerol addition or the use of non-<i>Vitis</i> anthocyanin sources, respectively. Some of these samples also showed suspicious spelling errors or other irregularities in the labelling, but the majority appeared genuine to the eye. Hence, this spot check demonstrates the importance of chemical authenticity analysis of market samples in order to detect fraudulent products. Moreover, we used the same sample set for an evaluation of the Chinese standard method for carbon stable isotope determination of wine ethanol in comparison to the current OIV (International Organisation of Vine and Wine) standard method. The results of a Bland-Altman analysis indicated that the methods can be applied interchangeably. As the two methods differ in their workflow and in the requested equipment, this might eventually enable more laboratories to perform <sup>13</sup>C/<sup>12</sup>C analysis of wine and spirits.
DOI: 10.5066/p9izahmx
title: Enhanced Terrain Imagery of the Monticello 30 x 60 Minute Quadrangle from Lidar-Derived Elevation Models at 3-Meter Resolution

description: This imagery dataset consists of 3-meter resolution, Lidar-derived imagery of the Monticello 30 x 60 minute quadrangle in New York and covers part of the Delaware River Basin. The source data used to construct this imagery consists of 1-meter and 2-meter resolution Lidar-derived digital elevation models (DEM). The Lidar source data were compiled from different acquisitions published between 2005 and 2015 from New York state. The data were processed using geographic information systems (GIS) software. The data is projected in North America Datum (NAD) UTM Zone 18 North. This representation illustrates the terrain as a hillshade with contrast adjusted to highlight local relief according to a topographic position index (TPI) calculation.
DOI: 10.5066/p9hjqurf
title: Poplar Island Digitizing

description: In order to allow for a comparison across years we visually digitized landcover of Poplar Island from a single image per year at a 1:1000 spatial extent with a minimum mapping unit of 300 square meters (no minimum dimensions aside from area). Images used to assign landcover were provided by the U.S. Army Corps of Engineers and were captured between July and October of their respective years. All images were 1 foot resolution.