cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7348409
title: Hazardous and contaminated sites within salt marsh migration corridors in Rhode Island, USA

description: These data on salt marsh migration corridors and hazardous and contaminated sites in Rhode Island support a project analyzing their overlap for the use of marsh restoration practitioners and HCS remediation specialists. As salt marshes attempt to migrate upland due to sea level rise, they will encounter many kinds of land development and infrastructure in highly populated, urbanized coastal communities. Hazardous and contaminated sites (HCSs) -- facilities and infrastructure that store, use, or release harmful substances -- are particularly concerning obstacles to salt marsh migration because of their potential to release contaminants if their structural integrity is compromised. Inventorying HCSs within migration pathways can inform coastal resilience planning. To understand what kinds of HCSs migrating marsh may encounter in Rhode Island, USA, we inventoried sites from federal and state sources, assigned contaminant hazard rankings to most sites, and overlayed them with projected marsh migration corridors. We found that HCSs are extensive across marsh migration corridors in the state, especially in urban areas. Among the most common HCSs in and around Rhode Island salt marshes are stormwater outfalls, underground storage tanks, and facilities registered with EPA’s Resource Conservation and Recovery Act (RCRA) or EPA’s National Pollutant Discharge Elimination System (NPDES). These sites pose varying hazards to human and aquatic life if breached, with some sites representing little or no threat but most posing some degree of hazard to their surroundings. This coastal HCSs inventory can inform prioritization and management of coastal salt marshes subject to accelerated sea level rise. Management decisions such as allowing marsh migration, implementing adaptation actions to build salt marsh elevation, or erecting physical barriers at marsh sites will influence future salt marsh extent, marshes’ ability to provide ecosystem services, and public health exposures to toxic releases. In addition, as Rhode Island and other coastal states work to promote coastal resiliency, this type of inventory can inform decisions about which HCSs to prioritize for remediation and other climate adaptation actions. Marsh migration is just one potential consequence of sea level rise, so many of the considerations outlined here are widely applicable to the broader goal of preparing coastal communities for rising seas.
DOI: 10.5281/zenodo.7348465
title: asn_name

description: ASN y Nombre de cada compañía que posee un ASN en el globo.
DOI: 10.5281/zenodo.7348464
title: asn_name

description: ASN y Nombre de cada compañía que posee un ASN en el globo.
DOI: 10.5281/zenodo.7348463
title: Mash Sketch of RefSeq Bacterial Representative Genomes v215

description: Prepared as described in https://github.com/UPHL-BioNGS/DesolationCanyon. This is the representative genomes of refseq 215 with their taxon name.
DOI: 10.5281/zenodo.7348462
title: Mash Sketch of RefSeq Bacterial Representative Genomes v215

description: Prepared as described in https://github.com/UPHL-BioNGS/DesolationCanyon. This is the representative genomes of refseq 215 with their taxon name.
DOI: 10.26208/q3xs-s924
title: The influence of cross-interactions between dilute cosolutes upon liquid interfaces

description: We employ a statistical mechanical dilute solution theory (DST) and lattice Monte Carlo simulations to investigate the interfacial properties of ternary solutions with a dominant solvent and two dilute cosolutes. We consider cosolutes with weak interfacial preferences in order to focus on the impact of cross-interactions between the two cosolute species. When the cross-interaction is properly balanced, the two cosolutes make independent, additive contributions to both bulk and interfacial properties. Conversely, repulsive cross-interactions slightly enhance the interfacial preference of both solutes. In contrast, attractive cross-interactions reduce interfacial preferences and can convert weak surfactants into weak depletants. We observe a particularly interesting transition in the symmetric case of two equivalent self-repelling cosolutes with attractive cross-interactions. In this regime, the major cosolute acts as a weak surfactant in order to avoid repulsive self-interactions, while the minor cosolute acts as a weak depletant in order to form attractive cross-interactions. The two equivalent cosolutes switch roles depending upon their relative concentration. DST very accurately describes the surface tension and surface excess of simulated lattice solutions up to molar concentrations. More importantly, DST provides quantitative and qualitative insight into the mechanism by which cosolute interactions modulate interfacial preferences
DOI: 10.5281/zenodo.7276499
title: Identifying mountain permafrost degradation by repeating historical ERT-measurements

description: Ongoing global warming affects the degradation of mountainous permafrost. Permafrost thawing impacts landform evolution, reduces fresh water resources, enhances the potential of natural hazards, and thus has significant socio-economic impact. Electrical resistivity tomography (ERT) has been widely used to map the ice-containing permafrost by its resistivity contrast compared to the surrounding non-frozen medium. We analyse the temporal changes in the resistivity distribution by comparing historical with recently measured ERT profiles. Three periglacial landforms (two rock glaciers and one talus slope) are surveyed in the Swiss and Austrian Alps by repeating historical field campaigns after periods of 10, 12, and 16 years, respectively. The resistivity values have been significantly reduced concerning ice-poor permafrost at all study sites. Interestingly, resistivity values related to ice-rich permafrost in the studied active rock glacier partly increased during the studied time period. To explain this apparent contradictory (in view of observed increase) observation, geomorphological circumstances, such as the relief and creeping behaviour of the active rock glacier, are discussed. Additional remote sensing data indicates an increased velocity in and around the active part with increased resistivity. The present study highlights alpine permafrost degradation resulting from ever-accelerating global warming.
DOI: 10.34740/kaggle/dsv/4565886
title: Infrared Solar Modules
DOI: 10.25573/data.21259581
title: Smithsonian Annual Report PDFs

description: PDF files resulting from OCR using Tesseract for Smithsonian Annual Report documents. The JPG 2000s that were used as input data were downloaded from https://library.si.edu/digital-library/collection/smithsonian-legacy-publications. These PDF files were not post-processed.
DOI: 10.25573/data.21259581.v1
title: Smithsonian Annual Report PDFs

description: PDF files resulting from OCR using Tesseract for Smithsonian Annual Report documents. The JPG 2000s that were used as input data were downloaded from https://library.si.edu/digital-library/collection/smithsonian-legacy-publications. These PDF files were not post-processed.
DOI: 10.25573/data.21257661
title: Smithsonian Annual Reports Image Files

description: JPEG 2000 files for Smithsonian Annual Report documents. These were downloaded from https://library.si.edu/digital-library/collection/smithsonian-legacy-publications and used for natural language processing applications.
DOI: 10.25573/data.21257661.v1
title: Smithsonian Annual Reports Image Files

description: JPEG 2000 files for Smithsonian Annual Report documents. These were downloaded from https://library.si.edu/digital-library/collection/smithsonian-legacy-publications and used for natural language processing applications.
DOI: 10.7924/r4hq43h4c
title: Data from: Improved 3D markerless mouse pose estimation using temporal semi-supervision

description: Three-dimensional markerless pose estimation from multi-view video is emerging as an exciting method for quantifying the behavior of freely moving animals. Nevertheless, scientifically precise 3D animal pose estimation remains challenging, primarily due to a lack of large training and benchmark datasets and the immaturity of algorithms tailored to the demands of animal experiments and body plans. Existing techniques employ fully supervised convolutional neural networks (CNNs) trained to predict body keypoints in individual video frames, but this demands a large collection of labeled training samples to achieve desirable 3D tracking performance. Here, we introduce a semi-supervised learning strategy that incorporates unlabeled video frames via a simple temporal constraint applied during training. In freely moving mice, our new approach improves the current state-of-the-art performance of multi-view volumetric 3D pose estimation and further enhances the temporal stability and skeletal consistency of 3D tracking.
DOI: 10.5281/zenodo.4633581
title: Dataset to submitted manuscript "Trans-cis isomerization kinetics of cyanine dyes reports on the folding states of RNA G-quadruplexes in live cells"

description: <strong>This folder contains all raw data underlying the results presented in a manuscript, submitted to Nucleic Acids Research, and entitled:</strong> <strong><em>Trans</em></strong><strong>-<em>cis</em> isomerization kinetics of cyanine dyes reports on the folding states of RNA G-quadruplexes in live cells </strong> <strong>Authored by:</strong> Johan Tornmalm<sup>1,*</sup>, Akira Kitamura<sup>2,*</sup>, Baris Demirbay<sup>1</sup>, Masataka Kinjo<sup>2</sup>, Jerker Widengren<sup>1+</sup> <sup>1</sup> Experimental Biomolecular Physics, Department of Applied Physics, Royal Institute of Technology (KTH), Stockholm, Sweden <sup>2</sup> Laboratory of Molecular Cell Dynamics, Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan <sup>* </sup>Contributed equally <sup>+</sup> To whom correspondence should be addressed. Email: jwideng@kth.se. Tel: +46-8-7907813 <strong>The data files are grouped into the different techniques used to generate them, and refer to the figures/tables in the manuscript where the extracted results are presented. </strong> <strong>ABSTRACT</strong> Guanine (G)-rich nucleic acids are prone to assemble into four-stranded structures, so-called G-quadruplexes. Abnormal GGGGCC repeat elongations, and in particular their folding states, are associated with amyotrophic lateral sclerosis and frontotemporal dementia. Due to methodological constraints however, most studies of G quadruplex structures are restricted to <em>in vitro</em> conditions. Evidence of how GGGGCC repeats form into G-quadruplexes <em>in vivo</em> is sparse. We devised a readout strategy, exploiting the sensitivity of <em>trans</em>-<em>cis</em> isomerization of cyanine dyes to local viscosity and sterical constraints. Thereby, folding states of cyanine-labeled RNA, and in particular G-quadruplexes, can be identified in a sensitive manner. The isomerization kinetics, monitored via fluorescence blinking generated upon transitions between a fluorescent <em>trans</em> isomer and a non-fluorescent <em>cis</em> isomer, was first characterized for RNA with GGGGCC repeats in aqueous solution using fluorescence correlation spectroscopy and transient state (TRAST) monitoring. With TRAST, monitoring the isomerization kinetics from how the average fluorescence intensity varies with laser excitation modulation characteristics, we could then detect folding states of injected fluorescently tagged RNA in live cells.
DOI: 10.5281/zenodo.5902981
title: Dataset to submitted manuscript "Trans-cis isomerization kinetics of cyanine dyes reports on the folding states of RNA G-quadruplexes in live cells"

description: <strong>This folder contains all raw data underlying the results presented in a manuscript, submitted to Nucleic Acids Research, and entitled:</strong> <strong><em>Trans</em></strong><strong>-<em>cis</em> isomerization kinetics of cyanine dyes reports on the folding states of RNA G-quadruplexes in live cells </strong> <strong>Authored by:</strong> Akira Kitamura<sup>2,*</sup>, Johan Tornmalm<sup>1,*</sup>, Baris Demirbay<sup>1</sup>, Joachim Piguet<sup>1</sup>, Masataka Kinjo<sup>2</sup>, Jerker Widengren<sup>1+</sup> <sup>1</sup> Experimental Biomolecular Physics, Department of Applied Physics, Royal Institute of Technology (KTH), Stockholm, Sweden <sup>2</sup> Laboratory of Molecular Cell Dynamics, Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan <sup>* </sup>Contributed equally <sup>+</sup> To whom correspondence should be addressed. Email: jwideng@kth.se. Tel: +46-8-7907813 <strong>The data files are grouped into the different techniques used to generate them, and refer to the figures/tables in the manuscript where the extracted results are presented. </strong> <strong>ABSTRACT</strong> Guanine (G)-rich nucleic acids are prone to assemble into four-stranded structures, so-called G-quadruplexes. Abnormal GGGGCC repeat elongations, and in particular their folding states, are associated with amyotrophic lateral sclerosis and frontotemporal dementia. Due to methodological constraints however, most studies of G quadruplex structures are restricted to <em>in vitro</em> conditions. Evidence of how GGGGCC repeats form into G-quadruplexes <em>in vivo</em> is sparse. We devised a readout strategy, exploiting the sensitivity of <em>trans</em>-<em>cis</em> isomerization of cyanine dyes to local viscosity and sterical constraints. Thereby, folding states of cyanine-labeled RNA, and in particular G-quadruplexes, can be identified in a sensitive manner. The isomerization kinetics, monitored via fluorescence blinking generated upon transitions between a fluorescent <em>trans</em> isomer and a non-fluorescent <em>cis</em> isomer, was first characterized for RNA with GGGGCC repeats in aqueous solution using fluorescence correlation spectroscopy and transient state (TRAST) monitoring. With TRAST, monitoring the isomerization kinetics from how the average fluorescence intensity varies with laser excitation modulation characteristics, we could then detect folding states of fluorescently tagged RNA introduced into live cells.
DOI: 10.5281/zenodo.5907388
title: Dataset to submitted manuscript "Trans-cis isomerization kinetics of cyanine dyes reports on the folding states of RNA G-quadruplexes in live cells"

description: <strong>This folder contains all raw data underlying the results presented in a manuscript, submitted to Nucleic Acids Research, and entitled:</strong> <strong><em>Trans</em></strong><strong>-<em>cis</em> isomerization kinetics of cyanine dyes reports on the folding states of RNA G-quadruplexes in live cells </strong> <strong>Authored by:</strong> Akira Kitamura<sup>2,*</sup>, Johan Tornmalm<sup>1,*</sup>, Baris Demirbay<sup>1</sup>, Joachim Piguet<sup>1</sup>, Masataka Kinjo<sup>2</sup>, Jerker Widengren<sup>1+</sup> <sup>1</sup> Experimental Biomolecular Physics, Department of Applied Physics, Royal Institute of Technology (KTH), Stockholm, Sweden <sup>2</sup> Laboratory of Molecular Cell Dynamics, Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan <sup>* </sup>Contributed equally <sup>+</sup> To whom correspondence should be addressed. Email: jwideng@kth.se. Tel: +46-8-7907813 <strong>The data files are grouped into the different techniques used to generate them, and refer to the figures/tables in the manuscript where the extracted results are presented. </strong> <strong>ABSTRACT</strong> Guanine (G)-rich nucleic acids are prone to assemble into four-stranded structures, so-called G-quadruplexes. Abnormal GGGGCC repeat elongations, and in particular their folding states, are associated with amyotrophic lateral sclerosis and frontotemporal dementia. Due to methodological constraints however, most studies of G quadruplex structures are restricted to <em>in vitro</em> conditions. Evidence of how GGGGCC repeats form into G-quadruplexes <em>in vivo</em> is sparse. We devised a readout strategy, exploiting the sensitivity of <em>trans</em>-<em>cis</em> isomerization of cyanine dyes to local viscosity and sterical constraints. Thereby, folding states of cyanine-labeled RNA, and in particular G-quadruplexes, can be identified in a sensitive manner. The isomerization kinetics, monitored via fluorescence blinking generated upon transitions between a fluorescent <em>trans</em> isomer and a non-fluorescent <em>cis</em> isomer, was first characterized for RNA with GGGGCC repeats in aqueous solution using fluorescence correlation spectroscopy and transient state (TRAST) monitoring. With TRAST, monitoring the isomerization kinetics from how the average fluorescence intensity varies with laser excitation modulation characteristics, we could then detect folding states of fluorescently tagged RNA introduced into live cells.
DOI: 10.5281/zenodo.6524134
title: Dataset to submitted manuscript "Trans-cis isomerization kinetics of cyanine dyes reports on the folding states of exogeneous RNA G-quadruplexes in live cells"

description: <strong>This folder contains all raw data underlying the results presented in a manuscript, submitted to Nucleic Acids Research, and entitled:</strong> <strong><em>Trans</em></strong><strong>-<em>cis</em> isomerization kinetics of cyanine dyes reports on the folding states of exogeneous RNA G-quadruplexes in live cells </strong> <strong>Authored by:</strong> Akira Kitamura<sup>2,*</sup>, Johan Tornmalm<sup>1,*</sup>, Baris Demirbay<sup>1</sup>, Joachim Piguet<sup>1</sup>, Masataka Kinjo<sup>2</sup>, Jerker Widengren<sup>1+</sup> <sup>1</sup> Experimental Biomolecular Physics, Department of Applied Physics, Royal Institute of Technology (KTH), Stockholm, Sweden <sup>2</sup> Laboratory of Molecular Cell Dynamics, Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan <sup>* </sup>Contributed equally <sup>+</sup> To whom correspondence should be addressed. Email: jwideng@kth.se. Tel: +46-8-7907813 <strong>The data files are grouped into the different techniques used to generate them, and refer to the figures/tables in the manuscript where the extracted results are presented. </strong> <strong>ABSTRACT</strong> Guanine (G)-rich nucleic acids are prone to assemble into four-stranded structures, so-called G-quadruplexes. Abnormal GGGGCC repeat elongations, and in particular their folding states, are associated with amyotrophic lateral sclerosis and frontotemporal dementia. Due to methodological constraints however, most studies of G quadruplex structures are restricted to <em>in vitro</em> conditions. Evidence of how GGGGCC repeats form into G-quadruplexes <em>in vivo</em> is sparse. We devised a readout strategy, exploiting the sensitivity of <em>trans</em>-<em>cis</em> isomerization of cyanine dyes to local viscosity and sterical constraints. Thereby, folding states of cyanine-labeled RNA, and in particular G-quadruplexes, can be identified in a sensitive manner. The isomerization kinetics, monitored via fluorescence blinking generated upon transitions between a fluorescent <em>trans</em> isomer and a non-fluorescent <em>cis</em> isomer, was first characterized for RNA with GGGGCC repeats in aqueous solution using fluorescence correlation spectroscopy and transient state (TRAST) monitoring. With TRAST, monitoring the isomerization kinetics from how the average fluorescence intensity varies with laser excitation modulation characteristics, we could then detect folding states of fluorescently tagged RNA introduced into live cells.
DOI: 10.5281/zenodo.7339571
title: Job offers of remote and data-science related positions - Source: Remotive.com

description: Most relevant job offers published in the categories of software development, data and sysadming and devops of the web Remotive.com
DOI: 10.5281/zenodo.7339570
title: Job offers of remote and data-science related positions - Source: Remotive.com

description: Most relevant job offers published in the categories of software development, data and sysadming and devops of the web Remotive.com
DOI: 10.3886/2gj2-pn41
title: Burkina Faso Compact - Access to Rural Finance: Design Report (English)
DOI: 10.3886/wgdj-2p28
title: Burkina Faso Compact - Access to Rural Finance: Design Report (English)
DOI: 10.25573/data.21210515
title: Smithsonian Annual Reports Text files

description: Text files resulting from OCR using Tesseract for Smithsonian Annual Report documents. The JPGs that were used as input data were downloaded from https://library.si.edu/digital-library/collection/smithsonian-legacy-publications.
DOI: 10.25573/data.21210515.v1
title: Smithsonian Annual Reports Text files

description: Text files resulting from OCR using Tesseract for Smithsonian Annual Report documents. The JPGs that were used as input data were downloaded from https://library.si.edu/digital-library/collection/smithsonian-legacy-publications.
DOI: 10.3886/mwkp-e488
title: Burkina Faso Compact - Diversified Agriculture and Water Management: Design Report (English)
DOI: 10.3886/jt8e-1522
title: Burkina Faso Compact - Diversified Agriculture and Water Management: Design Report (English)
DOI: 10.3886/4rps-f626
title: Burkina Faso Compact - Access to Rural Finance: Design Report (French)
DOI: 10.3886/qrqn-sg46
title: Burkina Faso Compact - Access to Rural Finance: Design Report (French)
DOI: 10.6084/m9.figshare.21604026.v1
title: Susztak Lab Datasets

description: Susztaklab Kidney Biobank hosts comprehensive kidney omics data to help understand kidney homeostasis and disease.<br> Susztaklab Kidney Biobank: https://susztaklab.com/<br> Susztak Lab: https://www.med.upenn.edu/susztaklab/
DOI: 10.3886/h5qq-h262
title: Burkina Faso Compact - Diversified Agriculture and Water Management: Design Report (French)
DOI: 10.3886/kkg2-2412
title: Burkina Faso Compact - Diversified Agriculture and Water Management: Design Report (French)
DOI: 10.34740/kaggle/dsv/4566145
title: Printed Digits Dataset
DOI: 10.3886/z0ka-dj37
title: Burkina Faso Compact - Roads: Design Report (IDG 2017)
DOI: 10.3886/6rs8-ks88
title: Burkina Faso Compact - Roads: Design Report (IDG 2017)
DOI: 10.6084/m9.figshare.21605598
title: TR2022_TransvectionDataScripts

description: Data and scripts for the associated manuscript. <br> Rzezniczak et al. (2022). Regulation at <em>Drosophila</em>’s Malic Enzyme highlights the complexity of transvection and its sensitivity to genetic background. Genetics. Accepted. <br> Authors: Teresa Z. Rzezniczak, Mark T. Rzezniczak, Bruce H. Reed, Ian Dworkin, Thomas J.S. Merritt <br> All information about data and scripts can be found in the READMe file that is part of the repository. <br> This contains the static version of the data and scripts at time of acceptance. It is from https://github.com/DworkinLab/TR2022_TransvectionDataScripts
DOI: 10.6084/m9.figshare.21605598.v1
title: TR2022_TransvectionDataScripts

description: Data and scripts for the associated manuscript. <br> Rzezniczak et al. (2022). Regulation at <em>Drosophila</em>’s Malic Enzyme highlights the complexity of transvection and its sensitivity to genetic background. Genetics. Accepted. <br> Authors: Teresa Z. Rzezniczak, Mark T. Rzezniczak, Bruce H. Reed, Ian Dworkin, Thomas J.S. Merritt <br> All information about data and scripts can be found in the READMe file that is part of the repository. <br> This contains the static version of the data and scripts at time of acceptance. It is from https://github.com/DworkinLab/TR2022_TransvectionDataScripts