cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15313156
title: Mutation Profiling of SARS-CoV-2 Sample at Multiple Allele Frequency Thresholds

description: This dataset contains high-throughput mutation profiling of a SARS-CoV-2 sample:

BioSample: SAMN48146492SRA: SRS24854363Isolate name: SARS-CoV-2/human/USA/NJ-GBW-GKISBBBF40282/2025Isolation Source: AN SwabCollecion Date: 15-April-2025Geographical Loction: Newark, New Jersey. USA.Host Info: United Arab Emirates (UAE).Submitter: Ginkgo BioworksVariant Calling and Mutation Profiling conducted by:   Tahir HB

The Variant Calling and Mutation Profiling analysis was performed using iVar variant calling at three allele frequency thresholds: 1%, 0.5%, and 0.1%. All mutations were matched to known lineage-defining SNPs and annotated based on gene location according to NC_045512.2 Wuhan-Hu-1 reference genome.

Files included:- variants_1p.tsv: Mutations called at ≥ 1% AF- variants_0_5p.tsv: Mutations called at ≥ 0.5% AF- variants_0_1p.tsv: Mutations at ≥ 0.1% AF- common_mutations.csv: Mutations found in all three files- unique_mutations_per_pos.csv: Unique mutations per position with AF values- top_common_mutations.csv: Top 30 mutations sorted by AF at 1% level- voc_matched_mutations.csv: Comparison with known VOC markers- mutation_heatmap_common.png: Heatmap of mutation presence across thresholds- mutation_table_by_lineage.csv: Lineage-specific mutation comparison- mutation_presence_heatmap.png: Matches with GISAID profiles

The dataset provides insights into mutation patterns, intergenic changes, and conserved lineage markers.

This profile shows partial match with Delta variant and stable presence of D614G and T1001I mutations.

All files are generated from BAM alignment to NC_045512.2 reference genome and curated for scientific use.

Note: Due to file size limitations, larger files such as alignment (BAM/BAI, FASTA/Q etc.) files are not included in this upload. These files are available upon request and can be provided directly by the author if needed for verification or extended analysis.
DOI: 10.15468/dl.cc3ns6
title: Occurrence Download

description: A dataset containing 22525 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Amphibia, Testudines, Crocodylia, Squamata)",
 "Geometry POLYGON((-75.2679 4.46188,-75.26173 4.46218,-75.25795 4.4625,-75.23495 4.46613,-75.225 4.46779,-75.22019 4.46879,-75.10822 4.49216,-75.10307 4.49419,-75.09859 4.49623,-75.0948 4.49897,-75.091 4.5024,-75.0872 4.50618,-75.08478 4.50962,-75.08371 4.51479,-75.04413 4.91807,-74.98408 6.23936,-74.98426 6.26322,-75.0284 6.60451,-75.31444 7.0202,-75.43328 7.09115,-75.43982 7.09076,-75.44532 7.09037,-75.44945 7.08931,-75.47901 7.08151,-75.60473 7.03575,-75.7757 6.96718,-75.77913 6.9644,-75.78151 6.95989,-75.79019 6.91912,-75.79216 6.90427,-75.79572 6.87078,-75.80212 6.78198,-75.80182 6.77875,-75.74707 6.25955,-75.56328 4.54594,-75.56158 4.54282,-75.55784 4.53899,-75.54929 4.53513,-75.54821 4.53479,-75.28606 4.46374,-75.28127 4.46267,-75.2727 4.46192,-75.2679 4.46188))"
 ]
 }
 ]
}

 The dataset includes 22525 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008855-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m94uha
title: Occurrence Download

description: A dataset containing 56976 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arachnida",
 "Year is 1989"
 ]
}

 The dataset includes 56976 records from 318 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008850-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/9b8a2b3d7455febe612f3d0f02e419d5
title: Soil biota counts from the Biotic Effects Experiment (BEE), McMurdo Dry Valleys, Antarctica (1999-2024, ongoing)

description: Increases in soil temperature and moisture may change the bioavailability of essential elements by altering solubility and diffusion rates in soils, or by changing the amounts of organic compounds. Long-term experiments in the Bonney, Hoare and Fryxell basins have been established with three treatments: 1) increased moisture, 2) soil warming (ITEX chambers), and 3) soil warming + increased moisture. The identification and abundance of soil biota are reported. Only control treatments have been measured since the 2014-2015 austral summer.
DOI: 10.15468/dl.t2k5b4
title: Occurrence Download

description: A dataset containing 22525 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Amphibia, Testudines, Crocodylia, Squamata)",
 "Geometry POLYGON((-75.2679 4.46188,-75.26173 4.46218,-75.25795 4.4625,-75.23495 4.46613,-75.225 4.46779,-75.22019 4.46879,-75.10822 4.49216,-75.10307 4.49419,-75.09859 4.49623,-75.0948 4.49897,-75.091 4.5024,-75.0872 4.50618,-75.08478 4.50962,-75.08371 4.51479,-75.04413 4.91807,-74.98408 6.23936,-74.98426 6.26322,-75.0284 6.60451,-75.31444 7.0202,-75.43328 7.09115,-75.43982 7.09076,-75.44532 7.09037,-75.44945 7.08931,-75.47901 7.08151,-75.60473 7.03575,-75.7757 6.96718,-75.77913 6.9644,-75.78151 6.95989,-75.79019 6.91912,-75.79216 6.90427,-75.79572 6.87078,-75.80212 6.78198,-75.80182 6.77875,-75.74707 6.25955,-75.56328 4.54594,-75.56158 4.54282,-75.55784 4.53899,-75.54929 4.53513,-75.54821 4.53479,-75.28606 4.46374,-75.28127 4.46267,-75.2727 4.46192,-75.2679 4.46188))"
 ]
 }
 ]
}

 The dataset includes 22525 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008856-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39drpy
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionCode is one of (rom, nrm, aum)",
 "TaxonKey is Bujurquina megalospilus Kullander, 1986"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026557-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.agkjrq
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "InstitutionCode is ypm",
 "InstitutionCode is smf"
 ]
 },
 "TaxonKey is Lethrinops leptodon Regan, 1922"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0180172-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckuebe
title: Occurrence Download

description: A dataset containing 57923026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((38.000 85.000, -27.000 85.000, -27.000 56.000, 38.000 56.000, 38.000 85.000))",
 "Year is greater than or equal to 2020"
 ]
}

 The dataset includes 57923026 records from 609 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071898-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f2ew7i
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002835-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prwv6c
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionCode is one of (nrm, usnm, fmnh)",
 "TaxonKey is Bujurquina ortegai Kullander, 1986"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026585-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnuypv
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002864-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.owe9e9
title: Occurrence Download

description: A dataset containing 1828612119 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1828612119 records from 19787 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033679-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1379116.10fu
title: SH1379116.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1379119.10fu
title: SH1379119.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1379120.10fu
title: SH1379120.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1379124.10fu
title: SH1379124.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.17026/dans-za6-gfy7
title: Breda Seminarieweg 29
title: Inventariserend veldonderzoek door middel van proefsleuven

description: &lt;p&gt;In opdracht van Dhr. A. Aarts, via Grosfeld Van der Velde Architecten heeft de Afdeling Ruimte van de gemeente Breda op 14 en 15 oktober 2014 een inventariserend veldonderzoek door middel van proefsleuven uitgevoerd op een perceel aan de Seminarieweg 29 te Breda. Aansluitend is het onderzoek uitgebreid tot het volledig onbebouwde deel van het plangebied. Aanleiding voor het onderzoek is de sloop van de huidige bebouwing en de toekomstige bouw van een woning, waarbij bodemverstorende werkzaamheden plaatsvinden. Het archeologisch onderzoek heeft sporen en vondsten opgeleverd uit het laat paleolithicum en uit de late middeleeuwen tot en met de nieuwe tijd. De vele vuursteenvondsten die we op dit terrein aantroffen duiden op aanwezigheid van mensen op deze plek in het late paleolithicum en specifieker nog tussen 9560 en 7850 VC. De vondsten behoren tot de Tjonger-Federmessergroep. De sporen en overige vondsten worden allemaal gedateerd in de late middeleeuwen en nieuwe tijd. Er zijn twee noordoost-zuidwest georiënteerde greppels gevonden die vermoedelijk gegraven zijn in de late middeleeuwen en nieuwe tijd A. Ook zijn er paalsporen gevonden waarvan een aantal behoort tot een (bij)gebouw, en er zijn twee sloten gevonden die te dateren zijn in de 18e en begin 19e eeuw.&lt;/p&gt;
description: Issued: 2015
description: Toevoeging van geconverteerde GIS-data uit het originele ArcheoLink APR-bestand.
DOI: 10.15156/bio/sh1379129.10fu
title: SH1379129.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1379130.10fu
title: SH1379130.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.nwumuy
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gleditsia triacanthos",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 29 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016000-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekfwxw
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Barilius niloticus"
 ]
}

 The dataset includes 34 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016002-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apjyye
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptantha setosissima"
 ]
}

 The dataset includes 304 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016003-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4unww2
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gleditsia triacanthos",
 "Country is Moldova, Republic of",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016004-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5q88h
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Felis catus",
 "Country is Saint Lucia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016005-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2p647
title: Occurrence Download

description: A dataset containing 5387 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calochortus gunnisonii"
 ]
}

 The dataset includes 5387 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016006-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3dgzyy
title: Occurrence Download

description: A dataset containing 5813 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Pseudacris feriarum)"
 ]
}

 The dataset includes 5813 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016007-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.trqgfg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gleditsia triacanthos",
 "Country is Mozambique",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016008-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktmvbz
title: Occurrence Download

description: A dataset containing 1767 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium muelleriferdinandi"
 ]
}

 The dataset includes 1767 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016011-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25055588
title: An Expanded Subventricular Zone Supports Postnatal Cortical Interneuron Migration in Gyrencephalic Brains

description: single nucleus RNA sequecing from neontal human ventricular regions. Based on differential gene expression, a total 15 cell subtypes are identified. Top genes of each subtype are listed.
DOI: 10.6084/m9.figshare.25055588.v1
title: An Expanded Subventricular Zone Supports Postnatal Cortical Interneuron Migration in Gyrencephalic Brains

description: single nucleus RNA sequecing from neontal human ventricular regions. Based on differential gene expression, a total 15 cell subtypes are identified. Top genes of each subtype are listed.
DOI: 10.18170/dvn/8ftql1
title: Prolonged atmospheric chemical lifetime of unsaturated fatty acids from cooking sources observed in Beijing during wintertime

description: Atmospheric observation data during December 2021 to January 2022 (SV-TAG).