cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3553692.v1
title: Appendix B. Parameter estimates and 95% confidence intervals for best-fitting models of juvenile fig abundance.

description: Parameter estimates and 95% confidence intervals for best-fitting models of juvenile fig abundance.
DOI: 10.6084/m9.figshare.3553689
title: Appendix A. Methodological details of plant propagation, field site, cucurbitacin analyses, and mycorrhizal staining.

description: Methodological details of plant propagation, field site, cucurbitacin analyses, and mycorrhizal staining.
DOI: 10.6084/m9.figshare.3553689.v1
title: Appendix A. Methodological details of plant propagation, field site, cucurbitacin analyses, and mycorrhizal staining.

description: Methodological details of plant propagation, field site, cucurbitacin analyses, and mycorrhizal staining.
DOI: 10.6084/m9.figshare.3553686
title: Appendix B. Volatile sampling methods, analyses, and results.

description: Volatile sampling methods, analyses, and results.
DOI: 10.6084/m9.figshare.3553686.v1
title: Appendix B. Volatile sampling methods, analyses, and results.

description: Volatile sampling methods, analyses, and results.
DOI: 10.6084/m9.figshare.3553683
title: Appendix C. Tables of statistical analyses.

description: Tables of statistical analyses.
DOI: 10.6084/m9.figshare.3553680
title: Appendix A. Soil elemental values from Doherty 2009.

description: Soil elemental values from Doherty 2009.
DOI: 10.6084/m9.figshare.3553680.v1
title: Appendix A. Soil elemental values from Doherty 2009.

description: Soil elemental values from Doherty 2009.
DOI: 10.6084/m9.figshare.3553677
title: Appendix B. List of AMF morphospecies found in Palmerton soils.

description: List of AMF morphospecies found in Palmerton soils.
DOI: 10.6084/m9.figshare.3553677.v1
title: Appendix B. List of AMF morphospecies found in Palmerton soils.

description: List of AMF morphospecies found in Palmerton soils.
DOI: 10.6084/m9.figshare.3553674
title: Appendix C. Raw biomass data for Deschampsia flexuosa across treatments.

description: Raw biomass data for Deschampsia flexuosa across treatments.
DOI: 10.6084/m9.figshare.3553674.v1
title: Appendix C. Raw biomass data for Deschampsia flexuosa across treatments.

description: Raw biomass data for Deschampsia flexuosa across treatments.
DOI: 10.6084/m9.figshare.3553671
title: Appendix D. Raw biomass data for Sorghastrum nutans across treatments.

description: Raw biomass data for Sorghastrum nutans across treatments.
DOI: 10.6084/m9.figshare.3553671.v1
title: Appendix D. Raw biomass data for Sorghastrum nutans across treatments.

description: Raw biomass data for Sorghastrum nutans across treatments.
DOI: 10.6084/m9.figshare.3553668
title: Appendix E. ANOVA results from root colonization analyses of Deschampsia flexuosa.

description: ANOVA results from root colonization analyses of Deschampsia flexuosa.
DOI: 10.6084/m9.figshare.3553668.v1
title: Appendix E. ANOVA results from root colonization analyses of Deschampsia flexuosa.

description: ANOVA results from root colonization analyses of Deschampsia flexuosa.
DOI: 10.6084/m9.figshare.3553665
title: Appendix F. Raw root colonization data for Deschampsia flexuosa across treatments.

description: Raw root colonization data for Deschampsia flexuosa across treatments.
DOI: 10.6084/m9.figshare.3553665.v1
title: Appendix F. Raw root colonization data for Deschampsia flexuosa across treatments.

description: Raw root colonization data for Deschampsia flexuosa across treatments.
DOI: 10.6084/m9.figshare.3553662
title: Appendix G. ANOVA results from root colonization analyses of Sorghastrum nutans.

description: ANOVA results from root colonization analyses of Sorghastrum nutans.
DOI: 10.6084/m9.figshare.3553662.v1
title: Appendix G. ANOVA results from root colonization analyses of Sorghastrum nutans.

description: ANOVA results from root colonization analyses of Sorghastrum nutans.
DOI: 10.6084/m9.figshare.3553659
title: Appendix H. Raw root colonization data for Sorghastrum nutans across treatments.

description: Raw root colonization data for Sorghastrum nutans across treatments.
DOI: 10.6084/m9.figshare.3553659.v1
title: Appendix H. Raw root colonization data for Sorghastrum nutans across treatments.

description: Raw root colonization data for Sorghastrum nutans across treatments.
DOI: 10.6084/m9.figshare.3553656
title: Appendix I. Levels of P and Zn in shoots of Deschampsia flexuosa shoots across treatments.

description: Levels of P and Zn in shoots of Deschampsia flexuosa shoots across treatments.
DOI: 10.6084/m9.figshare.3553656.v1
title: Appendix I. Levels of P and Zn in shoots of Deschampsia flexuosa shoots across treatments.

description: Levels of P and Zn in shoots of Deschampsia flexuosa shoots across treatments.
DOI: 10.6084/m9.figshare.3553653
title: Appendix A. Analysis of the dependence between scale and aggregation measure.

description: Analysis of the dependence between scale and aggregation measure.
DOI: 10.6084/m9.figshare.3553653.v1
title: Appendix A. Analysis of the dependence between scale and aggregation measure.

description: Analysis of the dependence between scale and aggregation measure.
DOI: 10.6084/m9.figshare.3553650
title: Appendix B. Sensitivity analysis of the simulation model for the shape of the dispersal kernel.

description: Sensitivity analysis of the simulation model for the shape of the dispersal kernel.
DOI: 10.6084/m9.figshare.3553647
title: Appendix C. Detailed description of the simulation model with locally density-dependent mortality.

description: Detailed description of the simulation model with locally density-dependent mortality.
DOI: 10.6084/m9.figshare.3553647.v1
title: Appendix C. Detailed description of the simulation model with locally density-dependent mortality.

description: Detailed description of the simulation model with locally density-dependent mortality.
DOI: 10.6084/m9.figshare.3553644
title: Appendix D. List of the species included in the study.

description: List of the species included in the study.
DOI: 10.6084/m9.figshare.3553644.v1
title: Appendix D. List of the species included in the study.

description: List of the species included in the study.
DOI: 10.6084/m9.figshare.3553641
title: Appendix E. Analysis of the effect of habitat dependency on the results.

description: Analysis of the effect of habitat dependency on the results.
DOI: 10.6084/m9.figshare.3553641.v1
title: Appendix E. Analysis of the effect of habitat dependency on the results.

description: Analysis of the effect of habitat dependency on the results.
DOI: 10.6084/m9.figshare.3553638
title: Appendix F. Description of the estimation procedure for the weights used in the weighted regression models.

description: Description of the estimation procedure for the weights used in the weighted regression models.
DOI: 10.6084/m9.figshare.3553638.v1
title: Appendix F. Description of the estimation procedure for the weights used in the weighted regression models.

description: Description of the estimation procedure for the weights used in the weighted regression models.
DOI: 10.6084/m9.figshare.3553635
title: Appendix G. Test for phylogenetic bias.

description: Test for phylogenetic bias.
DOI: 10.6084/m9.figshare.3553635.v1
title: Appendix G. Test for phylogenetic bias.

description: Test for phylogenetic bias.
DOI: 10.6084/m9.figshare.3553632
title: Appendix H. Analysis of the relationship between abundance and aggregation in the simulation model.

description: Analysis of the relationship between abundance and aggregation in the simulation model.
DOI: 10.6084/m9.figshare.3553629
title: Supplement 1. MATLAB code used for the purpose of this study.

description: File List matlab.zip - contains all files (md5: 270958ea5f316bd0104e5574230d492a)<br> <br> bootstrapFitModell.m (md5: fd346296b366e4b359ec04b0d46a4c39)<br> computeOmegaBiVariateVector.m (md5: 45e3a92916b092277af26d3597eb0ef7)<br> figure1BW.m (md5: e81dfb6adbe1dfafc24d7ea24f81889a)<br> figure2BW.m (md5: 66b1c4ea724828fb6d4730b1eddfdc24)<br> figure3BW.m (md5: 7aabe7c7631fa6fa802ab41aa62ec13d)<br> figureC1.m (md5: 1e66313352727cc890acbb42f105ca5c)<br> finalOmegaParentProcess.m (md5: 634ce5726e3a4be604b01f172066d091)<br> finalOmegaParentProcessDD.m (md5: 83f712ca2139f25ba380cdf78af35a08)<br> fitModell.m (md5: 58cc3ca41413921134dc133b5523fe05)<br> gfplotBW.m (md5: 497dd4a9a7716ad7786e8dee029c0857)<br> growProcess.m (md5: a194c14d5ccce3cdb88f8986dc3845fc)<br> growProcessDD.m (md5: 2a64938233bfd06012b5f391169b5141)<br> parentProcess.m (md5: 354122d3320b90e300f10e6a5d022099)<br> parentProcessDD.m (md5: f78bad7ab5fe9daeec605c469f68def7)<br> periodicBoundaryDistance.m (md5: 6698c2d322412577855081dd44d0e2d8)<br> readForestFile.m (md5: 3b45b4c04e4305fff44cc6387a2543fd)<br> shrinkProcessDD.m (md5: a5de8e5b304e412beb8b246bc5413ba2)<br> testGrowParentProcess.m (md5: 2e3c02c5362c0c522ba0220d04f346e1)<br> testGrowParentProcessDD.m (md5: 4fa92aae0dd1aaf6090184b8d150e04a)<br> testGrowShrinkParentProcess.m (md5: 90483e49f252833276353c560dc71b1a)<br> testGrowShrinkParentProcessDD.m (md5: c3582d6feafdb8c6faf5da75ee9bbeb4)<br> testParentProcess.m (md5: a053e47c4e2655f40bcbbde7ff9ea02f)<br> testParentProcessDD.m (md5: 7618b74c78ffd6804ea95cb1d02af8a9)<br> testShrinkParentProcess.m (md5: 8db823120a812a2c3218cb80200ec75c)<br> testShrinkParentProcessDD.m (md5: 39eaeef1f4b618da3f008987fdd63cf2)<br> COPYING.txt (md5: d32239bcb673463ab874e80d47fae504)<br> README.txt (md5: b3971ea94de3f8d72d42ceab51c93e5d) Description For the analysis, you will need the census data from 1985, 2000, and 2005 for Barro Colorado Island (BCI), available from http://www.ctfs.si.edu/site/Barro+Colorado+Island. readForestFile.m can be used to parse the BCI data files. computeOmegaBiVariateVector.m can compute the Omega aggregation index. bootstrapFitModell.m is used to compute the <i>R</i><sup>2</sup> values and the significance improvement when adding variables to the linear regression. figure1BW.m, figure2BW.m, figure3BW.m, and figureC1.m can be used to plot the corresponding figure in the manuscript given the appropriate input. testGrowShrinkParentProcess.m is needed to compute the simulation results for Fig. 1. testGrowShrinkParentProcessDD.m is needed to compute the locally density dependent simulation results for Fig. C1.
DOI: 10.6084/m9.figshare.3553629.v1
title: Supplement 1. MATLAB code used for the purpose of this study.

description: File List matlab.zip - contains all files (md5: 270958ea5f316bd0104e5574230d492a)<br> <br> bootstrapFitModell.m (md5: fd346296b366e4b359ec04b0d46a4c39)<br> computeOmegaBiVariateVector.m (md5: 45e3a92916b092277af26d3597eb0ef7)<br> figure1BW.m (md5: e81dfb6adbe1dfafc24d7ea24f81889a)<br> figure2BW.m (md5: 66b1c4ea724828fb6d4730b1eddfdc24)<br> figure3BW.m (md5: 7aabe7c7631fa6fa802ab41aa62ec13d)<br> figureC1.m (md5: 1e66313352727cc890acbb42f105ca5c)<br> finalOmegaParentProcess.m (md5: 634ce5726e3a4be604b01f172066d091)<br> finalOmegaParentProcessDD.m (md5: 83f712ca2139f25ba380cdf78af35a08)<br> fitModell.m (md5: 58cc3ca41413921134dc133b5523fe05)<br> gfplotBW.m (md5: 497dd4a9a7716ad7786e8dee029c0857)<br> growProcess.m (md5: a194c14d5ccce3cdb88f8986dc3845fc)<br> growProcessDD.m (md5: 2a64938233bfd06012b5f391169b5141)<br> parentProcess.m (md5: 354122d3320b90e300f10e6a5d022099)<br> parentProcessDD.m (md5: f78bad7ab5fe9daeec605c469f68def7)<br> periodicBoundaryDistance.m (md5: 6698c2d322412577855081dd44d0e2d8)<br> readForestFile.m (md5: 3b45b4c04e4305fff44cc6387a2543fd)<br> shrinkProcessDD.m (md5: a5de8e5b304e412beb8b246bc5413ba2)<br> testGrowParentProcess.m (md5: 2e3c02c5362c0c522ba0220d04f346e1)<br> testGrowParentProcessDD.m (md5: 4fa92aae0dd1aaf6090184b8d150e04a)<br> testGrowShrinkParentProcess.m (md5: 90483e49f252833276353c560dc71b1a)<br> testGrowShrinkParentProcessDD.m (md5: c3582d6feafdb8c6faf5da75ee9bbeb4)<br> testParentProcess.m (md5: a053e47c4e2655f40bcbbde7ff9ea02f)<br> testParentProcessDD.m (md5: 7618b74c78ffd6804ea95cb1d02af8a9)<br> testShrinkParentProcess.m (md5: 8db823120a812a2c3218cb80200ec75c)<br> testShrinkParentProcessDD.m (md5: 39eaeef1f4b618da3f008987fdd63cf2)<br> COPYING.txt (md5: d32239bcb673463ab874e80d47fae504)<br> README.txt (md5: b3971ea94de3f8d72d42ceab51c93e5d) Description For the analysis, you will need the census data from 1985, 2000, and 2005 for Barro Colorado Island (BCI), available from http://www.ctfs.si.edu/site/Barro+Colorado+Island. readForestFile.m can be used to parse the BCI data files. computeOmegaBiVariateVector.m can compute the Omega aggregation index. bootstrapFitModell.m is used to compute the <i>R</i><sup>2</sup> values and the significance improvement when adding variables to the linear regression. figure1BW.m, figure2BW.m, figure3BW.m, and figureC1.m can be used to plot the corresponding figure in the manuscript given the appropriate input. testGrowShrinkParentProcess.m is needed to compute the simulation results for Fig. 1. testGrowShrinkParentProcessDD.m is needed to compute the locally density dependent simulation results for Fig. C1.
DOI: 10.6084/m9.figshare.3553626
title: Appendix A. Results of the simulation study performed in Dray and Legendre (2008) for the two-step procedure of Dray and Legendre (2008) and the new sequential testing procedure.

description: Results of the simulation study performed in Dray and Legendre (2008) for the two-step procedure of Dray and Legendre (2008) and the new sequential testing procedure.
DOI: 10.6084/m9.figshare.3553623
title: Appendix A. Further details of model development and comparison, including articulation of the stochastic differential equations (SDE) model.

description: Further details of model development and comparison, including articulation of the stochastic differential equations (SDE) model.
DOI: 10.6084/m9.figshare.3553623.v1
title: Appendix A. Further details of model development and comparison, including articulation of the stochastic differential equations (SDE) model.

description: Further details of model development and comparison, including articulation of the stochastic differential equations (SDE) model.
DOI: 10.6084/m9.figshare.3553620
title: Appendix B. Figures of representative time series of single-patch and two-patch versions of the pure jump process (PJP), SDE, and ordinary differential equations (ODE) models, as well as time series of the long-term transient behavior of the ODE.

description: Figures of representative time series of single-patch and two-patch versions of the pure jump process (PJP), SDE, and ordinary differential equations (ODE) models, as well as time series of the long-term transient behavior of the ODE.
DOI: 10.6084/m9.figshare.3553620.v1
title: Appendix B. Figures of representative time series of single-patch and two-patch versions of the pure jump process (PJP), SDE, and ordinary differential equations (ODE) models, as well as time series of the long-term transient behavior of the ODE.

description: Figures of representative time series of single-patch and two-patch versions of the pure jump process (PJP), SDE, and ordinary differential equations (ODE) models, as well as time series of the long-term transient behavior of the ODE.
DOI: 10.6084/m9.figshare.3553617
title: Appendix C. Figures showing replicate-to-replicate variation of the two stochastic models and that the mean of 10 simulations was adequate for summarizing replicates.

description: Figures showing replicate-to-replicate variation of the two stochastic models and that the mean of 10 simulations was adequate for summarizing replicates.
DOI: 10.6084/m9.figshare.3553617.v1
title: Appendix C. Figures showing replicate-to-replicate variation of the two stochastic models and that the mean of 10 simulations was adequate for summarizing replicates.

description: Figures showing replicate-to-replicate variation of the two stochastic models and that the mean of 10 simulations was adequate for summarizing replicates.
DOI: 10.6084/m9.figshare.3553614
title: Appendix D. Sensitivity of the three models to initial conditions.

description: Sensitivity of the three models to initial conditions.
DOI: 10.6084/m9.figshare.3553614.v1
title: Appendix D. Sensitivity of the three models to initial conditions.

description: Sensitivity of the three models to initial conditions.
DOI: 10.6084/m9.figshare.3553611
title: Appendix A. Approaches to incorporating temporary emigration.

description: Approaches to incorporating temporary emigration.
DOI: 10.6084/m9.figshare.3553608
title: Appendix B. Details of the data-simulation process and data-quality scenarios.

description: Details of the data-simulation process and data-quality scenarios.
DOI: 10.6084/m9.figshare.3553611.v1
title: Appendix A. Approaches to incorporating temporary emigration.

description: Approaches to incorporating temporary emigration.
DOI: 10.6084/m9.figshare.3553608.v1
title: Appendix B. Details of the data-simulation process and data-quality scenarios.

description: Details of the data-simulation process and data-quality scenarios.
DOI: 10.6084/m9.figshare.3553605
title: Appendix C. Example WinBUGS code for the emigration model.

description: Example WinBUGS code for the emigration model.
DOI: 10.6084/m9.figshare.3553605.v1
title: Appendix C. Example WinBUGS code for the emigration model.

description: Example WinBUGS code for the emigration model.
DOI: 10.6084/m9.figshare.3553602
title: Appendix D. Maps of sparrow spatial kernel projections.

description: Maps of sparrow spatial kernel projections.
DOI: 10.6084/m9.figshare.3553602.v1
title: Appendix D. Maps of sparrow spatial kernel projections.

description: Maps of sparrow spatial kernel projections.
DOI: 10.6084/m9.figshare.3553599
title: Appendix E. Comparison of juvenile survival parameter estimates from the Cormack-Jolly-Seber model and the emigration model, using simulated data.

description: Comparison of juvenile survival parameter estimates from the Cormack-Jolly-Seber model and the emigration model, using simulated data.
DOI: 10.6084/m9.figshare.3553599.v1
title: Appendix E. Comparison of juvenile survival parameter estimates from the Cormack-Jolly-Seber model and the emigration model, using simulated data.

description: Comparison of juvenile survival parameter estimates from the Cormack-Jolly-Seber model and the emigration model, using simulated data.
DOI: 10.6084/m9.figshare.3553596
title: Appendix F. Mean squared error values for juvenile survival parameter estimates from the Cormack-Jolly-Seber model and the emigration model, using simulated data.

description: Mean squared error values for juvenile survival parameter estimates from the Cormack-Jolly-Seber model and the emigration model, using simulated data.
DOI: 10.6084/m9.figshare.3553596.v1
title: Appendix F. Mean squared error values for juvenile survival parameter estimates from the Cormack-Jolly-Seber model and the emigration model, using simulated data.

description: Mean squared error values for juvenile survival parameter estimates from the Cormack-Jolly-Seber model and the emigration model, using simulated data.
DOI: 10.6084/m9.figshare.3553593
title: Appendix G. Cape Sable Seaside Sparrow juvenile survival estimates.

description: Cape Sable Seaside Sparrow juvenile survival estimates.
DOI: 10.6084/m9.figshare.3553593.v1
title: Appendix G. Cape Sable Seaside Sparrow juvenile survival estimates.

description: Cape Sable Seaside Sparrow juvenile survival estimates.
DOI: 10.6084/m9.figshare.3553590
title: Appendix A. Additional methodology of metabolism measurements.

description: Additional methodology of metabolism measurements.
DOI: 10.6084/m9.figshare.3553590.v1
title: Appendix A. Additional methodology of metabolism measurements.

description: Additional methodology of metabolism measurements.
DOI: 10.6084/m9.figshare.3553587
title: Appendix B. Additional methodology and results for litter decomposition experiment.

description: Additional methodology and results for litter decomposition experiment.
DOI: 10.6084/m9.figshare.3553587.v1
title: Appendix B. Additional methodology and results for litter decomposition experiment.

description: Additional methodology and results for litter decomposition experiment.
DOI: 10.6084/m9.figshare.3553584
title: Appendix C. Additional OM budget methodology and data.

description: Additional OM budget methodology and data.
DOI: 10.6084/m9.figshare.3553584.v1
title: Appendix C. Additional OM budget methodology and data.

description: Additional OM budget methodology and data.
DOI: 10.6084/m9.figshare.3553581
title: Data Paper. Data Paper

description: File List shapefiles.zip (md5: 356dcc75331a1636d76951e5dc92b606) -- 23,685 Kb (compressed). This is a zipped directory, containing every individual shapefile for each year that each quadrat was mapped. allrecords_point_features.csv (md5: 0064ce104e44636589c1d602da906b3f) -- 488 Kb, ASCII text, comma separated. No compression scheme was used. allrecords_polygon_features.csv (md5: 500a6ddf9609ff819085c36ec85b7b79) -- 14,061 Kb, ASCII text, comma separated. No compression scheme was used. quad_inventory.csv (md5: a18c2922b8c5deb51bd9acb4bdca57fc) -- 17 Kb, ASCII text, comma separated. No compression scheme was used. quad_info.csv (md5: 426af244c00de99ea09906be4409fee2) -- 12 Kb, ASCII text, comma separated. No compression scheme was used. precipitation.csv (md5: 0d6a42f671c6685245fe7796254cda0c) -- 66 Kb, ASCII text, comma separated. No compression scheme was used. species_list.csv (md5: 63d63ad3ed5908be85513d77125d6619) -- 4 Kb, ASCII text, comma separated. No compression scheme was used. species_name_changes.csv (md5: 7c08d8c5d16a3f1bc9b1289c5c3ed76d) -- 2 Kb, ASCII text, comma separated. No compression scheme was used. unmapped_plants.csv (md5: 18eb9872087da36ae014be564692e9fe) -- 133 Kb, ASCII text, comma separated. No compression scheme was used. Description This historical data set consists of 178 permanent 1-m² quadrats located on semi-desert grasslands at the Santa Rita Experimental Range, Arizona, USA. Individual plants in these quadrats were identified and mapped annually (in most cases) from 1915 to 1933 and again in 1947. Quadrats were located in ungrazed exclosures and in pastures grazed at various intensities by livestock. These data provide unique opportunities to test the interactive effects of grazing and climate variables on demographic rates, plant–plant interactions, and population and community dynamics. We provide the following data and data formats: (1) the digitized maps in shapefile format; (2) a tabular representation of centroid or point location (<i>x, y</i> coordinates), basal or canopy cover (m²) for plants mapped as polygons, perimeter length (m), and seedling and clone status for each individual plant record; (3) quadrat information including elevation, livestock grazing history, and proximity to closest long-term rainfall gauge; (4) monthly precipitation values for those gauges; (5) a species list including synonymy of names and plant growth forms; (6) an inventory of the years each quadrat was sampled; and (7) summary information on unmapped plants in each quadrat. <i>Key words: climate; Geographic Information Systems (GIS); livestock grazing; plant community; plant demography; Sonoran Desert; species interactions</i>.
DOI: 10.6084/m9.figshare.3553578
title: Appendix A. Calculating the frequency of effects on relative yield total (RYT) counter to the trend reported in Carroll et al. (2011).

description: Calculating the frequency of effects on relative yield total (RYT) counter to the trend reported in Carroll et al. (2011).
DOI: 10.6084/m9.figshare.3553578.v1
title: Appendix A. Calculating the frequency of effects on relative yield total (RYT) counter to the trend reported in Carroll et al. (2011).

description: Calculating the frequency of effects on relative yield total (RYT) counter to the trend reported in Carroll et al. (2011).