cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3661281
title: MiRoR14 - P3 - Effect of an editorial intervention to improve the completeness of reporting of randomised trials: a randomised controlled trial

description: Protocol: <strong><em>RCT Protocol Ammendment 2.pdf</em></strong> is the final version of the RCT protocol. R scripts used: <strong><em>Power RCT_bootstrap_paper.R</em></strong> was the code used for the power analysis. <strong><em>server.R</em></strong> and <strong><em>ui.R</em></strong> were part of the Shiny application used for the randomisation process. <strong><em>Primary Outcome analysis.R</em></strong> was the code used for the primary outcome analysis. These files can be found below.
DOI: 10.5281/zenodo.3661280
title: MiRoR14 - P3 - Effect of an editorial intervention to improve the completeness of reporting of randomised trials: a randomised controlled trial

description: Protocol: <strong><em>RCT Protocol Ammendment 2.pdf</em></strong> is the final version of the RCT protocol. R scripts used: <strong><em>Power RCT_bootstrap_paper.R</em></strong> was the code used for the power analysis. <strong><em>server.R</em></strong> and <strong><em>ui.R</em></strong> were part of the Shiny application used for the randomisation process. <strong><em>Primary Outcome analysis.R</em></strong> was the code used for the primary outcome analysis. These files can be found below.
DOI: 10.5281/zenodo.3997118
title: MiRoR15-P2-Development of ARCADIA: a tool for assessing the quality of peer-review reports in biomedical research

description: Survey questionnaire, anonymised survey data, and codebook related to: Superchi C, Hren D, Blanco D, Rius R, Recchioni A, Boutron I, González JA. Development of ARCADIA: a tool for assessing the quality of peer-review reports in biomedical research. BMJ Open 2020;0:e035604. doi:10.1136/bmjopen-2019-035604
DOI: 10.5281/zenodo.3997117
title: MiRoR15-P2-Development of ARCADIA: a tool for assessing the quality of peer-review reports in biomedical research

description: Survey questionnaire, anonymised survey data, and codebook related to: Superchi C, Hren D, Blanco D, Rius R, Recchioni A, Boutron I, González JA. Development of ARCADIA: a tool for assessing the quality of peer-review reports in biomedical research. BMJ Open 2020;0:e035604. doi:10.1136/bmjopen-2019-035604
DOI: 10.6084/m9.figshare.12854959
title: Safety of vaginal delivery in very low birthweight vertex singletons: a meta-analysis

description: <i>Objective</i>: The objective of this study is to assess the safety of vaginal delivery in VLBW singletons in the vertex presentation. <i>Methods</i>: MEDLINE, EMBASE, Cochrane Central Register of Controlled Trials, and Web of Science databases were searched for studies on mode of delivery and neonatal outcome in VLBW singletons in the vertex presentation. A total of 28 studies met our inclusion criteria. <i>Results</i>: Vaginal delivery was not associated with an increase in overall neonatal mortality compared with cesarean delivery (OR 0.87, 95% CI 0.72–1.04). Vaginal delivery was associated with a significant decrease in mortality for the 1250–1500 g birthweight category (OR 0.57, 95% CI 0.36–0.92), while an increase in mortality in the 500–750 g category was not significant (OR 1.5, 95% CI 0.86–2.61). Severe intraventricular hemorrhage (IVH) was not associated with mode of delivery (OR 1.05, 95% CI 0.85–1.29), but the only two high quality study that assessed IVH of all grades found an increase in risk for IVH in vaginal delivery (OR 1.33, 95% CI 1.16–1.51). <i>Conclusions</i>: Vaginal delivery does not appear to increase the risk for neonatal mortality. However, current available data on neonatal morbidity are limited. More high-quality studies are needed to assess the association between mode of delivery and neonatal morbidity.
DOI: 10.6084/m9.figshare.12854959.v1
title: Safety of vaginal delivery in very low birthweight vertex singletons: a meta-analysis

description: <i>Objective</i>: The objective of this study is to assess the safety of vaginal delivery in VLBW singletons in the vertex presentation. <i>Methods</i>: MEDLINE, EMBASE, Cochrane Central Register of Controlled Trials, and Web of Science databases were searched for studies on mode of delivery and neonatal outcome in VLBW singletons in the vertex presentation. A total of 28 studies met our inclusion criteria. <i>Results</i>: Vaginal delivery was not associated with an increase in overall neonatal mortality compared with cesarean delivery (OR 0.87, 95% CI 0.72–1.04). Vaginal delivery was associated with a significant decrease in mortality for the 1250–1500 g birthweight category (OR 0.57, 95% CI 0.36–0.92), while an increase in mortality in the 500–750 g category was not significant (OR 1.5, 95% CI 0.86–2.61). Severe intraventricular hemorrhage (IVH) was not associated with mode of delivery (OR 1.05, 95% CI 0.85–1.29), but the only two high quality study that assessed IVH of all grades found an increase in risk for IVH in vaginal delivery (OR 1.33, 95% CI 1.16–1.51). <i>Conclusions</i>: Vaginal delivery does not appear to increase the risk for neonatal mortality. However, current available data on neonatal morbidity are limited. More high-quality studies are needed to assess the association between mode of delivery and neonatal morbidity.
DOI: 10.21227/k3sz-wt25
title: Web-based Software-Suite for DC Railway Simulation and Analysis: Architecture, Data Management and Visualization

description: In this paper, a web-based application for DC Railways networks analysis is presented. The paper provides the guidelines to develop an integrated simulation framework containing different elements like server, databases, visual analytic tools using open-source software. In this case, the proposed application allows to design a DC railway feeding system and analyse the impact of the different agents like vehicles, substations, overhead feeding systems, on-board and wayside energy storage systems, etc. However, the same structure and described tools could be used to develop integrated frameworks applied to other railway or electrical transportation systems.
DOI: 10.21227/2d6a-g730
title: Web-based Software-Suite for DC Railway Simulation and Analysis: Architecture, Data Management and Visualization

description: In this paper, a web-based application for DC Railways networks analysis is presented. The paper provides the guidelines to develop an integrated simulation framework containing different elements like server, databases, visual analytic tools using open-source software. In this case, the proposed application allows to design a DC railway feeding system and analyse the impact of the different agents like vehicles, substations, overhead feeding systems, on-board and wayside energy storage systems, etc. However, the same structure and described tools could be used to develop integrated frameworks applied to other railway or electrical transportation systems.
DOI: 10.6084/m9.figshare.12854968
title: Morphometric analysis of autophagy-related structures in <i>Saccharomyces cerevisiae</i>

description: When macroautophagy (autophagy) is induced by nutrient starvation or rapamycin treatment, Atg (autophagy-related) proteins are assembled at a restricted region close to the vacuole. Subsequently, the phagophore expands to form a closed autophagosome. In <i>Saccharomyces cerevisiae</i> cells overexpressing precursor Ape1 (prApe1), a specific autophagosome cargo protein, the phagophore can be visualized as a cup-shaped structure labeled with green fluorescent protein (GFP)-tagged Atg8. Previously, our group has shown that the maximum length of GFP-Atg8-labeled structures reflects the magnitude of bulk autophagy. In that study, the morphological parameters of the autophagy-related structures were extracted manually, requiring a great deal of time. Moreover, only well-expanded phagophores were subjected to further analysis. Here we report Qautas (Quantitative autophagy-related structure analysis system), a high-throughput and comprehensive system for morphological analysis of autophagy-related structures using a combination of image processing and machine learning. We describe both the manual method and Qautas in detail.
DOI: 10.6084/m9.figshare.12854968.v1
title: Morphometric analysis of autophagy-related structures in <i>Saccharomyces cerevisiae</i>

description: When macroautophagy (autophagy) is induced by nutrient starvation or rapamycin treatment, Atg (autophagy-related) proteins are assembled at a restricted region close to the vacuole. Subsequently, the phagophore expands to form a closed autophagosome. In <i>Saccharomyces cerevisiae</i> cells overexpressing precursor Ape1 (prApe1), a specific autophagosome cargo protein, the phagophore can be visualized as a cup-shaped structure labeled with green fluorescent protein (GFP)-tagged Atg8. Previously, our group has shown that the maximum length of GFP-Atg8-labeled structures reflects the magnitude of bulk autophagy. In that study, the morphological parameters of the autophagy-related structures were extracted manually, requiring a great deal of time. Moreover, only well-expanded phagophores were subjected to further analysis. Here we report Qautas (Quantitative autophagy-related structure analysis system), a high-throughput and comprehensive system for morphological analysis of autophagy-related structures using a combination of image processing and machine learning. We describe both the manual method and Qautas in detail.
DOI: 10.25502/k1ev-ph39/d
title: SNP dataset for GWAS

description: Genetic diversity and Genome-wide association study
DOI: 10.5281/zenodo.3997309
title: Migration flow and complex network

description: Data is collected from Baidu Map (http://qianxi.baidu.com/). The migration scale index data, produced by the map service company of Baidu through the GPS location in mobile phone, record the number of migrants between any two cities. It visualises the migration flows in particular time periods. Although, it cannot capture all migrants, it is useful to conduct comparisons among different cities.
DOI: 10.5281/zenodo.3997308
title: Migration flow and complex network

description: Data is collected from Baidu Map (http://qianxi.baidu.com/). The migration scale index data, produced by the map service company of Baidu through the GPS location in mobile phone, record the number of migrants between any two cities. It visualises the migration flows in particular time periods. Although, it cannot capture all migrants, it is useful to conduct comparisons among different cities.
DOI: 10.24384/nvwr-jc60
title: Road crossing in individuals with Developmental Coordination Disorder: The lived experience
DOI: 10.6084/m9.figshare.12847646.v1
title: R0187_20171006a_videos

description: Rat 0187, skilled reaching data collected on 10/6/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.5281/zenodo.3997240
title: CWTS Leiden Ranking 2020

description: This data set provides the statistics made available in the 2020 edition of the CWTS Leiden Ranking. The Leiden Ranking 2020 is a bibliometric ranking of 1176 major universities worldwide. The ranking provides statistics on scientific impact, collaboration, open access publishing, and gender diversity. The ranking is based on bibliographic data from the Web of Science database produced by Clarivate Analytics.
DOI: 10.15468/uzx575
title: New Polypedilum Kieffer (Diptera: Chironomidae) from mountains of the Atlantic Forest, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shimabukuro, Erika Mayumi, Trivinho-Strixino, Susana, Lamas, Carlos José Einicker (2019): New Polypedilum Kieffer (Diptera: Chironomidae) from mountains of the Atlantic Forest, Brazil. Zootaxa 4612 (4): 518-532, DOI: https://doi.org/10.11646/zootaxa.4612.4.4
DOI: 10.5517/ccdc.csd.cc214txy
title: CCDC 1881480: Experimental Crystal Structure Determination

description: Related Article: Zubair Ahmed, Harold C. Avila, Rafael S. Carvalho, Jiang Kai, J. A. L. C. Resende, Elisa Bandini, Andrea Barbieri, Marco Cremona|2020|New J.Chem.|44|14161|doi:10.1039/D0NJ00403K
DOI: 10.5517/ccdc.csd.cc221tzy
title: CCDC 1908390: Experimental Crystal Structure Determination

description: Related Article: Aneta Turlik,  Yifeng Chen,  Anthony C. Scruse,  Timothy R. Newhouse|2019|J.Am.Chem.Soc.|141|20|doi:10.1021/jacs.9b03751
DOI: 10.5517/ccdc.csd.cc22d1zj
title: CCDC 1918217: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d20l
title: CCDC 1918218: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d21m
title: CCDC 1918219: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d22n
title: CCDC 1918220: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d23p
title: CCDC 1918221: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d26s
title: CCDC 1918224: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d27t
title: CCDC 1918225: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d29w
title: CCDC 1918227: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d2bx
title: CCDC 1918228: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d2cy
title: CCDC 1918229: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d2dz
title: CCDC 1918230: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d2f0
title: CCDC 1918231: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d2g1
title: CCDC 1918232: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d2h2
title: CCDC 1918233: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d2j3
title: CCDC 1918234: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.5517/ccdc.csd.cc22d2k4
title: CCDC 1918235: Experimental Crystal Structure Determination

description: Related Article: Christopher R. M. Asquith, Tuomo Laitinen, James M. Bennett, Carrow I. Wells, Jonathan M. Elkins, William J. Zuercher, Graham J. Tizzard, Antti Poso|2020|ChemMedChem|15|26|doi:10.1002/cmdc.201900521
DOI: 10.24384/4z3s-4x55
title: Teicoplanin data
DOI: 10.25386/genetics.12833708
title: Supplemental Material for Galtier and Rousselle, 2020

description: Table S1: Details on data sets<br>Table S2: Goodness of fit analysis<br>Ne_across_species_Genetics2_trackchange: track-change version of the revised manuscript for editor's convenience<br>
DOI: 10.25386/genetics.12833708.v1
title: Supplemental Material for Galtier and Rousselle, 2020

description: Table S1: Details on data sets<br>Table S2: Goodness of fit analysis<br>Ne_across_species_Genetics2_trackchange: track-change version of the revised manuscript for editor's convenience<br>
DOI: 10.15468/tw8e8y
title: Brontostoma lilloi Carpintero, 1980, a junior synonym of B. rubrovenosum (Stål, 1860) (Hemiptera: Heteroptera: Reduviidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gil-Santana, Hélcio R., Carpintero, Diego L. (2019): Brontostoma lilloi Carpintero, 1980, a junior synonym of B. rubrovenosum (Stål, 1860) (Hemiptera: Heteroptera: Reduviidae). Zootaxa 4614 (1): 180-186, DOI: https://doi.org/10.11646/zootaxa.4614.1.9
DOI: 10.21227/1b4e-4m29
title: Web-based Software-Suite for DC Railway Simulation and Analysis: Architecture, Data Management and Visualization

description: In this paper, a web-based application for DC Railways networks analysis is presented. The paper provides the guidelines to develop an integrated simulation framework containing different elements like server, databases, visual analytic tools using open-source software. In this case, the proposed application allows to design a DC railway feeding system and analyse the impact of the different agents like vehicles, substations, overhead feeding systems, on-board and wayside energy storage systems, etc. However, the same structure and described tools could be used to develop integrated frameworks applied to other railway or electrical transportation systems.
DOI: 10.21227/5fgx-tw40
title: MLCOMM Pilot Contamination Data

description: This data is used to train ML based SINR predictor
DOI: 10.21227/detz-ay09
title: MLCOMM Pilot Contamination Data

description: This data is used to train ML based SINR predictor
DOI: 10.5281/zenodo.3997299
title: Research Data Supporting "Theory and Implementation of a Novel Stochastic Approach to Coupled Cluster"

description: Research data supporting "Theory and Implementation of a Novel Stochastic Approach to Coupled Cluster". This dataset includes all outputs for diagrammatic Coupled Cluster Monte Carlo simulations on systems of noninteracting hydrogen square replicas, and the double dissociation of water. This dataset also includes all code used to generate, analyse and plot all diagCCMC results.
DOI: 10.5281/zenodo.3997298
title: Research Data Supporting "Theory and Implementation of a Novel Stochastic Approach to Coupled Cluster"

description: Research data supporting "Theory and Implementation of a Novel Stochastic Approach to Coupled Cluster". This dataset includes all outputs for diagrammatic Coupled Cluster Monte Carlo simulations on systems of noninteracting hydrogen square replicas, and the double dissociation of water. This dataset also includes all code used to generate, analyse and plot all diagCCMC results.
DOI: 10.15468/8ajb94
title: The cicada genus Selymbria Stå 1, 1861 (Hemiptera: Cicadidae: Tibicininae: Selymbrini): redescription including ten new species and a key to the genus

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sanborn, Allen F. (2019): The cicada genus Selymbria Stå 1, 1861 (Hemiptera: Cicadidae: Tibicininae: Selymbrini): redescription including ten new species and a key to the genus. Zootaxa 4614 (3): 401-448, DOI: https://doi.org/10.11646/zootaxa.4614.3.1
DOI: 10.5281/zenodo.3678732
title: Supplementary tables for "Differential neuropeptide modulation of premotor and motor neurons in the lobster cardiac ganglion underlies changes in patterned neuronal output"

description: Supplementary tables for "Differential neuropeptide modulation of premotor and motor neurons in the lobster cardiac ganglion"
DOI: 10.5281/zenodo.3678731
title: Supplementary tables for "Differential neuropeptide modulation of premotor and motor neurons in the lobster cardiac ganglion underlies changes in patterned neuronal output"

description: Supplementary tables for "Differential neuropeptide modulation of premotor and motor neurons in the lobster cardiac ganglion"
DOI: 10.15468/vpc9pg
title: A new species of Tropidion (Neoibidionini), synonymies in Rhinotragini, notes on Pirangoclytus (Clytini) andHemicladus (Calliini), andnew recordsin Cerambycidae (Coleoptera)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Santos-Silva, Antonio, Nascimento, Francisco E. De L., Biffi, Gabriel (2019): A new species of Tropidion (Neoibidionini), synonymies in Rhinotragini, notes on Pirangoclytus (Clytini) andHemicladus (Calliini), andnew recordsin Cerambycidae (Coleoptera). Zootaxa 4614 (3): 449-460, DOI: https://doi.org/10.11646/zootaxa.4614.3.2
DOI: 10.5519/0083480
title: Morelloid solanums of Argentina

description: All herbarium specimen data used in the following publication\r\n\r\nKnapp, S, Chiarini, F, Cantero, JJ, Braboza GE (2020) The Morelloid clade of Solanum L. (Solanaceae) in Argentina: nomenclatural changes, three new species and an updated key to all taxa. PhytoKeys xx: xxx-xxx (in press).\r\n\r\nAbstract. Since the publication of the Solanaceae treatment in Flora Argentina in 2013 exploration in the country and resolution of outstanding nomenclatural and circumscription issues has resulted in a number of changes to the species of the Morelloid clade of Solanum L. (Solanaceae) for Argentina. Here we describe three new species: Solanum hunzikeri Chiarini & Cantero sp. nov., from wet high elevation areas in Argentina (Catamarca and Tucum\xe1n) and Bolivia (Chuquisaca and Tarija), S. marmoratum Barboza & S.Knapp sp. nov., from central Argentina in Catamarca, La Pampa, La Rioja and San Luis, and S. tiinae Barboza & S.Knapp sp. nov., from the mountains of Jujuy, Salta and Tucum\xe1n. We provide descriptions, illustrations and distribution maps for all new taxa. A table of nomenclatural changes and additional taxa now known to occur in Argentina summarizes additions and changes since the Flora Argentina. We also provide an updated key, including all new taxa for the country, to facilitate identification and further exploration. \r\n\r\n