cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28937068.v2
title: Unique phenomenon of H5 highly pathogenic avian influenza virus in China: co-circulation of Clade 2.3.4.4b H5N1 and H5N6 results in diversity of H5 Virus

description: Recently, Clade 2.3.4.4b H5N1 virus has been widely prevalent globally. Although no outbreaks of Avian Influenza have occurred in poultry in China recently, Clade 2.3.4.4b H5 virus can still be isolated from wild birds, live poultry markets and environment, indicating the ongoing co-circulation of H5N1 and H5N6 viruses. In this study, phylogenetic analysis of global Clade 2.3.4.4b viruses and 20 laboratory-isolated H5 strains revealed that Chinese H5N1 and H5N6 viruses since 2021 cluster into two distinct groups, G-I and G-II. Bayesian phylodynamic analysis reveals that G-I H5N6 virus has become an endemic virus in China. In contrast, G-II H5N1 virus, with South China as its main epicentre, has been disseminated in China and its surrounding countries, with its transmission more reliant on the connections of wild birds and waterfowl. Reassortment analysis indicates that since 2023, Clade 2.3.4.4b H5 viruses isolated in China have formed seven genotypes. The genome of H5 viruses has undergone changes compared to those previously prevalent in China. Animal experiments have shown that prevalent H5 viruses exhibit significant lethality in chickens. Additionally, certain H5 viruses have shown the capability of systemic replication in mice. It is noted that H5N6 viruses with HA genes derived from H5N1 viruses demonstrate stronger virulence and pathogenicity in chickens and mice compared to G-I H5N6 viruses. Our study indicates that the co-circulation of H5N1 and H5N6 viruses in China has increased the diversity of H5 viruses, making continuous surveillance of H5 viruses essential.
DOI: 10.6084/m9.figshare.28937068.v1
title: Unique Phenomenon of H5 Highly Pathogenic Avian Influenza Virus in China: Co-circulation of Clade 2.3.4.4b H5N1 and H5N6 results in diversity of H5 Virus

description: Recently, Clade 2.3.4.4b H5N1 virus has been widely prevalent globally. Although no outbreaks of Avian Influenza have occurred in poultry in China recently, Clade 2.3.4.4b H5 virus can still be isolated from wild birds, live poultry markets and environment, indicating the ongoing co-circulation of H5N1 and H5N6 viruses. In this study, phylogenetic analysis of global Clade 2.3.4.4b viruses and 20 laboratory-isolated H5 strains revealed that Chinese H5N1 and H5N6 viruses since 2021 cluster into two distinct groups, G-I and G-II. Bayesian phylodynamic analysis reveals that G-I H5N6 virus has become an endemic virus in China. In contrast, G-II H5N1 virus, with South China as its main epicentre, has been disseminated in China and its surrounding countries, with its transmission more reliant on the connections of wild birds and waterfowl. Reassortment analysis indicates that since 2023, Clade 2.3.4.4b H5 viruses isolated in China have formed seven genotypes. The genome of H5 viruses has undergone changes compared to those previously prevalent in China. Animal experiments have shown that prevalent H5 viruses exhibit significant lethality in chickens. Additionally, certain H5 viruses have shown the capability of systemic replication in mice. It is noted that H5N6 viruses with HA genes derived from H5N1 viruses demonstrate stronger virulence and pathogenicity in chickens and mice compared to G-I H5N6 viruses. Our study indicates that the co-circulation of H5N1 and H5N6 viruses in China has increased the diversity of H5 viruses, making continuous surveillance of H5 viruses essential.
DOI: 10.6084/m9.figshare.28883326
title: Genomic epidemiology and antifungal resistance of emerging <i>Trichophyton indotineae</i> in China

description: The emergence and spread of antifungal-resistant <i>Trichophyton indotineae</i> pose an increasing public health concern worldwide. Multidrug-resistant <i>T. indotineae</i> infections have been reported in China in the past few years. To understand the genetic relationship and the origin of these Chinese isolates, as well as their relationship to the global collections, we sequenced the whole genomes of 31 isolates using the Illumina platforms. Genomic epidemiology was performed on a dataset of 181 <i>T. indotineae</i> isolates from China and 8 other countries, representing the largest genome-wide analysis. Single nucleotide polymorphism analysis revealed that <i>T. indotineae</i> can be divided into four distinct phylogenetic groups (I, II, III, IV), with regional clonal transmission clusters identified in eastern China; <i>T. indotineae</i> was introduced into China more than once given the genetic variability. The isolates from South Asia may be the source of Chinese isolates based on epidemiological information. There were differences in the prevalence and resistance profiles among four phylogenetic groups, with Group III being predominant and exhibiting a higher terbinafine resistance rate of 88.24% and azole resistance. Also, we characterized the role of gene mutation, copy number variation, and gene expression in antifungal drug resistance. Terbinafine resistance could be mainly associated with Phe397Leu substitution in <i>SQLE</i>, and azole resistance might be related to increased copy number of <i>CYP51B</i>, as well as elevated <i>MDR2</i> and <i>MDR3</i> expression. Given the clinical challenges posed by <i>T. indotineae</i>, this emerging dermatophyte should be recognized as a global threat, necessitating urgent collaborative surveillance and management strategies.
DOI: 10.6084/m9.figshare.28883326.v2
title: Genomic epidemiology and antifungal resistance of emerging <i>Trichophyton indotineae</i> in China

description: The emergence and spread of antifungal-resistant <i>Trichophyton indotineae</i> pose an increasing public health concern worldwide. Multidrug-resistant <i>T. indotineae</i> infections have been reported in China in the past few years. To understand the genetic relationship and the origin of these Chinese isolates, as well as their relationship to the global collections, we sequenced the whole genomes of 31 isolates using the Illumina platforms. Genomic epidemiology was performed on a dataset of 181 <i>T. indotineae</i> isolates from China and 8 other countries, representing the largest genome-wide analysis. Single nucleotide polymorphism analysis revealed that <i>T. indotineae</i> can be divided into four distinct phylogenetic groups (I, II, III, IV), with regional clonal transmission clusters identified in eastern China; <i>T. indotineae</i> was introduced into China more than once given the genetic variability. The isolates from South Asia may be the source of Chinese isolates based on epidemiological information. There were differences in the prevalence and resistance profiles among four phylogenetic groups, with Group III being predominant and exhibiting a higher terbinafine resistance rate of 88.24% and azole resistance. Also, we characterized the role of gene mutation, copy number variation, and gene expression in antifungal drug resistance. Terbinafine resistance could be mainly associated with Phe397Leu substitution in <i>SQLE</i>, and azole resistance might be related to increased copy number of <i>CYP51B</i>, as well as elevated <i>MDR2</i> and <i>MDR3</i> expression. Given the clinical challenges posed by <i>T. indotineae</i>, this emerging dermatophyte should be recognized as a global threat, necessitating urgent collaborative surveillance and management strategies.
DOI: 10.6084/m9.figshare.28883326.v1
title: Genomic Epidemiology and Antifungal Resistance of Emerging <i>Trichophyton indotineae</i> in China

description: The emergence and spread of antifungal-resistant <i>Trichophyton indotineae</i> pose an increasing public health concern worldwide. Multidrug-resistant <i>T. indotineae</i> infections have been reported in China in the past few years. To understand the genetic relationship and the origin of these Chinese isolates, as well as their relationship to the global collections, we sequenced the whole genomes of 31 isolates using the Illumina platforms. Genomic epidemiology was performed on a dataset of 181 <i>T. indotineae</i> isolates from China and 8 other countries, representing the largest genome-wide analysis. Single nucleotide polymorphism analysis revealed that <i>T. indotineae</i> can be divided into four distinct phylogenetic groups (I, II, III, IV), with regional clonal transmission clusters identified in eastern China; <i>T. indotineae</i> was introduced into China more than once given the genetic variability. The isolates from South Asia may be the source of Chinese isolates based on epidemiological information. There were differences in the prevalence and resistance profiles among four phylogenetic groups, with Group III being predominant and exhibiting a higher terbinafine resistance rate of 88.24% and azole resistance. Also, we characterised the role of gene mutation, copy number variation, and gene expression in antifungal drug resistance. Terbinafine resistance could be mainly associated with Phe397Leu substitution in <i>SQLE</i>, and azole resistance might be related to increased copy number of <i>CYP51B</i>, as well as elevated <i>MDR2</i> and <i>MDR3</i> expression. Given the clinical challenges posed by <i>T. indotineae</i>, this emerging dermatophyte should be recognised as a global threat, necessitating urgent collaborative surveillance and management strategies.
DOI: 10.15468/dl.a9bedb
title: Occurrence Download

description: A dataset containing 7088 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-84.05451 24.02821,-79.99441 24.02821,-79.99441 28.68918,-84.05451 28.68918,-84.05451 24.02821))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cephalaspidea"
 ]
}

 The dataset includes 7088 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026363-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/h494-0h12
title: Bloomingdale Bog testate amoebae surface sample dataset

description: Raw data for the Bloomingdale Bog testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/m35m-jb89
title: Trout Peatland A testate amoebae surface sample dataset

description: Raw data for the Trout Peatland A testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/qqvh-te62
title: LDDsite415 ostracode surface sample dataset

description: Raw data for the LDDsite415 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/qdep-ez25
title: LDDsite6193 water chemistry dataset

description: Raw data for the LDDsite6193 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.5ndbrg
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Daphnia laevis Birge, 1879"
 ]
}

 The dataset includes 174 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026365-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udnu97
title: Occurrence Download

description: A dataset containing 933 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Daphnia lumholtzi Sars, 1885"
 ]
}

 The dataset includes 933 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026366-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/9zqt-h036
title: TK-43 diatom surface sample dataset

description: Raw data for the TK-43 diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ecs8-7h73
title: Lake Erie ostracode surface sample dataset

description: Raw data for the Lake Erie ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/e46t-gj64
title: Bílé Karpaty 29 pollen surface sample dataset

description: Raw data for the Bílé Karpaty 29 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.qwp524
title: Occurrence Download

description: A dataset listing the 109 species recorded in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-79.35943 43.6457,-79.35651 43.64222,-79.34447 43.64744,-79.34698 43.65088,-79.35943 43.6457))"
 ]
}

 The dataset's 109 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026349-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/dp64-mz62
title: Bowser's Farm ostracode surface sample dataset

description: Raw data for the Bowser's Farm ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.2zsuyx
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Frankliniella occidentalis (Pergande, 1895)",
 "Country is Norway",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026368-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhnq6h
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Daphnia gessneri Herbst, 1967"
 ]
}

 The dataset includes 90 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026369-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28931513
title: datasets

description: This project explores the integration of <b>Geographic Information Systems (GIS)</b> and <b>Natural Language Processing (NLP)</b> to improve job–candidate matching in recruitment. Traditional AI-based e-recruitment systems often ignore geographic constraints. Our hybrid model addresses this gap by incorporating both textual similarity and spatial relevance in matching candidates to job postings.Data UsedCandidate Data (CVs)<b>Source</b>: Scraped from emploi.ma<b>Size</b>: 1000 CVs after cleaning<b>Content</b>: Candidate names (anonymized), skills, experiences, locations (coordinates), availability, etc.Job Descriptions<b>Source</b>: Publicly available dataset from Kaggle<b>Size</b>: we took 1000 job postings using category :Morocco<b>Content</b>: Titles, descriptions, required skills, sector labels, and office locations...All datasets have been cleaned and anonymized for privacy and research ethics compliance.
DOI: 10.6084/m9.figshare.28931513.v2
title: datasets

description: This project explores the integration of <b>Geographic Information Systems (GIS)</b> and <b>Natural Language Processing (NLP)</b> to improve job–candidate matching in recruitment. Traditional AI-based e-recruitment systems often ignore geographic constraints. Our hybrid model addresses this gap by incorporating both textual similarity and spatial relevance in matching candidates to job postings.Data UsedCandidate Data (CVs)<b>Source</b>: Scraped from emploi.ma<b>Size</b>: 1000 CVs after cleaning<b>Content</b>: Candidate names (anonymized), skills, experiences, locations (coordinates), availability, etc.Job Descriptions<b>Source</b>: Publicly available dataset from Kaggle<b>Size</b>: we took 1000 job postings using category :Morocco<b>Content</b>: Titles, descriptions, required skills, sector labels, and office locations...All datasets have been cleaned and anonymized for privacy and research ethics compliance.
DOI: 10.21233/e64d-9y43
title: Lake DV10 water chemistry dataset

description: Raw data for the Lake DV10 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.78ysxf
title: Occurrence Download

description: A dataset containing 20931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((71.65817 18.36341,137.55148 19.12629,136.88398 54.02781,71.65817 54.88604,71.65817 18.36341))",
 "TaxonKey is Magnoliaceae"
 ]
}

 The dataset includes 20931 records from 179 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026367-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/mqg0-dm39
title: LDDsite1191 ostracode surface sample dataset

description: Raw data for the LDDsite1191 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/y501-4b94
title: Lac Poison diatom surface sample dataset

description: Raw data for the Lac Poison diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15388358
title: Phenotypic Dataset: Behavioral and Morphological Traits and Hair Cortisol Concentration in Goats (Capra hircus)

description: This dataset comprises behavioral, morphological, and physiological characteristics of domestic goats (Capra hircus) collected to investigate non-invasive indicators of chronic stress. Behavioral traits (Phe1–Phe38) were quantified using a structured assessment based on the Quantitative Behavior Assessment (QBA) approach. The dataset also includes measurements of cortisol concentration in wool and plasma, alongside key morphological features such as coat coloration and pigmentation, and demographic variables including sex, age, horn status.
DOI: 10.5281/zenodo.15388359
title: Phenotypic Dataset: Behavioral and Morphological Traits and Hair Cortisol Concentration in Goats (Capra hircus)

description: This dataset comprises behavioral, morphological, and physiological characteristics of domestic goats (Capra hircus) collected to investigate non-invasive indicators of chronic stress. Behavioral traits (Phe1–Phe38) were quantified using a structured assessment based on the Quantitative Behavior Assessment (QBA) approach. The dataset also includes measurements of cortisol concentration in wool and plasma, alongside key morphological features such as coat coloration and pigmentation, and demographic variables including sex, age, horn status.
DOI: 10.21233/4219-5530
title: Trego Hot Springs [26PPe118] vertebrate fauna dataset

description: Raw data for the Trego Hot Springs [26PPe118] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/j0rd-fx03
title: Whitemud Creek water chemistry dataset

description: Raw data for the Whitemud Creek water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/wrj8-0965
title: Lake DV08 diatom surface sample dataset

description: Raw data for the Lake DV08 diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.cjj8jj
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clinotanypus yani Cheng & Wang, 2008"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026370-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/bz46-nw48
title: Brandwijk boring A pollen dataset

description: Raw data for the Brandwijk boring A pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.