cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3735397_d6
title: Additional file 6: of Unique DNA methylation signature in HPV-positive head and neck squamous cell carcinomas

description: Differentially methylated regions in oropharynx. (XLSX 884Â kb)
DOI: 10.15468/dl.v45s9a
title: Occurrence Download

description: A dataset containing 69090 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viviparidae"
 ]
}

 The dataset includes 69090 records from 451 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039174-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3735427_d3.v1
title: Additional file 3: of Quantitative evaluation and reversion analysis of the attractor landscapes of an intracellular regulatory network for colorectal cancer

description: The Boolean logic operator equations and the conversion of logic operator into weighted sum logic. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.c.3735427_d3
title: Additional file 3: of Quantitative evaluation and reversion analysis of the attractor landscapes of an intracellular regulatory network for colorectal cancer

description: The Boolean logic operator equations and the conversion of logic operator into weighted sum logic. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.c.3735430_d1
title: Additional file 1: Table S1. of Retention of normal glia function by an isoform-selective protein kinase inhibitor drug candidate that modulates cytokine production and cognitive outcomes

description: Cytokines and Aβ MSD. Source data for cytokine data in Fig. 1 and Aβ data in Fig. 5. (XLS 67 kb)
DOI: 10.6084/m9.figshare.c.3735397_d7.v1
title: Additional file 7: of Unique DNA methylation signature in HPV-positive head and neck squamous cell carcinomas

description: Differentially methylated regions in oral cavity. (XLSX 171Â kb)
DOI: 10.6084/m9.figshare.c.3737800_d5.v1
title: Additional file 4: Dataset S3. of Medium term water deficit elicits distinct transcriptome responses in Eucalyptus species of contrasting environmental origin

description: AgriGO Singular Enrichment Analysis outputs. (XLSX 59 kb)
DOI: 10.48597/95fu-68fh
title: Measurement of Ozone at Broomfield Soaring Eagle Park

description: Measurement of Ozone at Broomfield Soaring Eagle Park
DOI: 10.6084/m9.figshare.c.3737800_d5
title: Additional file 4: Dataset S3. of Medium term water deficit elicits distinct transcriptome responses in Eucalyptus species of contrasting environmental origin

description: AgriGO Singular Enrichment Analysis outputs. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3737806_d4.v1
title: Additional file 1 of Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment

description: Krona chart of recovered sediment taxa. Browsable Krona chart ([107], S1.html, please use an internet browser with network access to open the file) of all taxa based on the median occurrence of OTUs for each depth replicate and classified against the SILVA reference database (www.arb-silva.de, version 111). (HTML 114 kb)
DOI: 10.6084/m9.figshare.c.3737806_d4
title: Additional file 1 of Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment

description: Krona chart of recovered sediment taxa. Browsable Krona chart ([107], S1.html, please use an internet browser with network access to open the file) of all taxa based on the median occurrence of OTUs for each depth replicate and classified against the SILVA reference database (www.arb-silva.de, version 111). (HTML 114 kb)
DOI: 10.15468/dl.jcps6n
title: Occurrence Download

description: A dataset containing 2566 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Citrus sinensis (Mill.) Pers., 1806"
 ]
}

 The dataset includes 2566 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039180-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjgmxn
title: Occurrence Download

description: A dataset containing 1219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callionymus maculatus Rafinesque, 1810",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1219 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039181-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gk3fxj
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coniesta Hampson, 1919"
 ]
}

 The dataset includes 30 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039182-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3740018_d2.v1
title: Additional file 2: of The influence of parental practices on child promotive and preventive food consumption behaviors: a systematic review and meta-analysis

description: Meta-analysis dataset. Cleaned meta-analysis dataset. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3740018_d2
title: Additional file 2: of The influence of parental practices on child promotive and preventive food consumption behaviors: a systematic review and meta-analysis

description: Meta-analysis dataset. Cleaned meta-analysis dataset. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3740018_d3
title: Additional file 3: of The influence of parental practices on child promotive and preventive food consumption behaviors: a systematic review and meta-analysis

description: Database of all studies included in this review. This database allows for filtering of the studies according to the age group of children. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3741191_d3.v1
title: Additional file 3: of A few of my favorite things: circumscribed interests in autism are not accompanied by increased attentional salience on a personalized selective attention task

description: Raw data from experiment 2.
DOI: 10.6084/m9.figshare.c.3741191_d2
title: Additional file 2: of A few of my favorite things: circumscribed interests in autism are not accompanied by increased attentional salience on a personalized selective attention task

description: Raw data from experiment 1.
DOI: 10.6084/m9.figshare.c.3741191_d4
title: Additional file 4: of A few of my favorite things: circumscribed interests in autism are not accompanied by increased attentional salience on a personalized selective attention task

description: Raw data from the PASSION questionnaire.
DOI: 10.6084/m9.figshare.c.3741200_d1.v1
title: Additional file 1: of A systematic review and meta-analysis of trypanosome prevalence in tsetse flies

description: Raw data for meta-analysis. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3741200_d1
title: Additional file 1: of A systematic review and meta-analysis of trypanosome prevalence in tsetse flies

description: Raw data for meta-analysis. (XLSX 14Â kb)
DOI: 10.15468/dl.mcnrgn
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callionymus risso Lesueur, 1814",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 176 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039183-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3745379_d1.v1
title: MOESM1 of Genome-wide search for candidate genes for yeast robustness improvement against formic acid reveals novel susceptibility (Trk1 and positive regulators) and resistance (Haa1-regulon) determinants

description: Additional file 1: Table S1. List of genes whose expression increases S. cerevisiae tolerance to formic acid based on the screening of the EUROSCARF deletion mutant collection (the elimination of the indicated genes increases yeast susceptibility to formic acid). The severity of growth inhibition is indicated by “+” or “++” and the level was attributed according to the criteria described in Additional file 3.
DOI: 10.6084/m9.figshare.c.3745379_d1
title: MOESM1 of Genome-wide search for candidate genes for yeast robustness improvement against formic acid reveals novel susceptibility (Trk1 and positive regulators) and resistance (Haa1-regulon) determinants

description: Additional file 1: Table S1. List of genes whose expression increases S. cerevisiae tolerance to formic acid based on the screening of the EUROSCARF deletion mutant collection (the elimination of the indicated genes increases yeast susceptibility to formic acid). The severity of growth inhibition is indicated by “+” or “++” and the level was attributed according to the criteria described in Additional file 3.
DOI: 10.6084/m9.figshare.c.3745379_d2.v1
title: MOESM2 of Genome-wide search for candidate genes for yeast robustness improvement against formic acid reveals novel susceptibility (Trk1 and positive regulators) and resistance (Haa1-regulon) determinants

description: Additional file 2: Table S2. List of genes whose expression increases S. cerevisiae susceptibility to formic acid based on the screening of the EUROSCARF deletion mutant collection (the elimination of the indicated genes increases yeast tolerance to formic acid).
DOI: 10.6084/m9.figshare.c.3745385_d1.v1
title: Additional file 1: of Right aortic arch analysis – Anatomical variant or serious vascular defect?

description: Material data. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3745385_d1
title: Additional file 1: of Right aortic arch analysis – Anatomical variant or serious vascular defect?

description: Material data. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3745379_d2
title: MOESM2 of Genome-wide search for candidate genes for yeast robustness improvement against formic acid reveals novel susceptibility (Trk1 and positive regulators) and resistance (Haa1-regulon) determinants

description: Additional file 2: Table S2. List of genes whose expression increases S. cerevisiae susceptibility to formic acid based on the screening of the EUROSCARF deletion mutant collection (the elimination of the indicated genes increases yeast tolerance to formic acid).
DOI: 10.6084/m9.figshare.c.3745376_d3.v1
title: Additional file 12: Table S5. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

description: List of analyzed Oryza spp. samples with genetic characterization data. (CSV 74 kb)
DOI: 10.48597/4553-53mc
title: Measurement of Ozone at Broomfield Soaring Eagle Park

description: Measurement of Ozone at Broomfield Soaring Eagle Park
DOI: 10.48597/9dus-abr7
title: Ozone at Broomfield Soaring Eagle Park

description: Measurement of Ozone at Broomfield Soaring Eagle Park
DOI: 10.48597/ppp6-bqzx
title: Measurement of Ozone at Broomfield Soaring Eagle Park

description: Measurement of Ozone at Broomfield Soaring Eagle Park
DOI: 10.48597/p8wr-cwms
title: Measurement of Ozone at Broomfield Soaring Eagle Park

description: Measurement of Ozone at Broomfield Soaring Eagle Park
DOI: 10.6084/m9.figshare.c.3747611_d2.v1
title: Additional file 2: Table S2A. of Pan genome and CRISPR analyses of the bacterial fish pathogen Moritella viscosa

description: Summary of genomic statistics of M. viscosa. Table S2B. Sequence statistics. Table S2C. Orthologue statistics. Table S2D Comparative genome analysis. (XLSX 1103 kb)
DOI: 10.6084/m9.figshare.c.3747611_d2
title: Additional file 2: Table S2A. of Pan genome and CRISPR analyses of the bacterial fish pathogen Moritella viscosa

description: Summary of genomic statistics of M. viscosa. Table S2B. Sequence statistics. Table S2C. Orthologue statistics. Table S2D Comparative genome analysis. (XLSX 1103 kb)
DOI: 10.6084/m9.figshare.c.3747611_d3
title: Additional file 3: Data S1. of Pan genome and CRISPR analyses of the bacterial fish pathogen Moritella viscosa

description: M. viscosa CRISPR spacers. (TXT 17 kb)
DOI: 10.6084/m9.figshare.c.3747611_d3.v1
title: Additional file 3: Data S1. of Pan genome and CRISPR analyses of the bacterial fish pathogen Moritella viscosa

description: M. viscosa CRISPR spacers. (TXT 17 kb)
DOI: 10.6084/m9.figshare.28053497.v1
title: Supplementary Material for: Plasma transcriptome profile associated with CKD progression

description: Introduction: Understanding the molecular signals associated with the progression of kidney disease is vital for risk stratification and targeted treatment. Recent advances in RNA-sequencing technique has enabled us to characterize extracellular transcriptome profiles for precision diagnostics. 
Method: We evaluated the plasma mRNA profile of participants exhibiting slow (n=119) and fast (n=119) decline in estimated glomerular filtration rate (eGFR) among the Chronic Renal Insufficiency Cohort (CRIC) in a nested case control study. The two groups were matched for age, sex, race, baseline eGFR, proteinuria and diabetes status. The next generation sequencing data was analyzed using edgeR to identify differentially expressed genes (DEGs) and Ingenuity Pathway Analysis (IPA) was done to identify the associated pathways. We also compared the top plasma DEGs with gene expression in microdissected human CKD kidney.
Results: We identified fragments from ~28,000 annotated genes, of which 783 transcripts exhibited differential expression between slow and fast CKD progressors. Among 629 protein coding genes, 469 were overexpressed in slow progressors, while 157 showed increased expression in fast progressors. Expression of GLI2, CUX1, NOTCH1 and LRP1 transcripts were amplified in slow progressors. Pathway analysis linked these differentially expressed genes to WNT/β-catenin signaling, IL-12 signaling and production in macrophages, Netrin-1 Signaling and Epithelial-Mesenchymal Transition pathways. Many of the plasma differentially expressed genes were also upregulated in microdissected human CKD kidney. 
Conclusion: Warranting further validation, circulating levels of aberrantly expressed transcripts hold potential to be used as biomarkers for fast CKD progression.
DOI: 10.15468/dl.xyavsc
title: Occurrence Download

description: A dataset containing 614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cantherhines macrocerus (Hollard, 1853)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 614 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039184-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3747734_d2.v1
title: Additional file 2: Table S1. of Genome-wide identification of genes probably relevant to the adaptation of schizothoracins (Teleostei: Cypriniformes) to the uplift of the Qinghai-Tibet Plateau

description: Specifics of the short reads of the transcriptome sequencing projects for the polyploid cyprinids used in this report. (XLS 16 kb)
DOI: 10.6084/m9.figshare.c.3747734_d2
title: Additional file 2: Table S1. of Genome-wide identification of genes probably relevant to the adaptation of schizothoracins (Teleostei: Cypriniformes) to the uplift of the Qinghai-Tibet Plateau

description: Specifics of the short reads of the transcriptome sequencing projects for the polyploid cyprinids used in this report. (XLS 16 kb)
DOI: 10.15468/dl.q3mvvk
title: Occurrence Download

description: A dataset containing 678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Xyleborus ferrugineus (J.C.Fabricius, 1802)",
 "Year 2000-2024"
 ]
}

 The dataset includes 678 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039185-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9erg9a
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Pholiurus pannonicus (Host) Trin."
 ]
}

 The dataset includes 83 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039186-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3749399_d3.v1
title: Additional file 1: Table S1. of Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth

description: Complete list of all reads in FA 1090 from Rockhopper analysis at 1, 2, 3, 4, and 5Â hrs in Fe minus and Fe plus growth conditions. Representative growth curves for FA 1090, LJ001 nrrf mutant strain and NrrF complemented strain LJ002. (XLSX 302 kb)
DOI: 10.6084/m9.figshare.c.3749399_d4.v1
title: Additional file 2: Table S2. of Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth

description: List of the 340 candidate sRNAs reported in FA 1090 at 1, 2, 3, 4, and 5Â h in Fe minus and Fe plus growth conditions. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3749405_d1.v1
title: Additional file 1: of The phylogeny of fossil whip spiders

description: File format:.vaxml (see [38]). Title: Tomographic reconstruction of Graeophonus anglicus Pocock, 1911. Description: A 3D mesh model of Graeophonus anglicus in the VAXML interchange format. (ZIP 45.3 mb)
DOI: 10.6084/m9.figshare.c.3749399_d3
title: Additional file 1: Table S1. of Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth

description: Complete list of all reads in FA 1090 from Rockhopper analysis at 1, 2, 3, 4, and 5Â hrs in Fe minus and Fe plus growth conditions. Representative growth curves for FA 1090, LJ001 nrrf mutant strain and NrrF complemented strain LJ002. (XLSX 302 kb)
DOI: 10.6084/m9.figshare.c.3749402_d1.v1
title: Additional file 10: of HirBin: high-resolution identification of differentially abundant functions in metagenomes

description: Table showing selected samples from the Qin [25] study for the resampling analysis. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3749405_d1
title: Additional file 1: of The phylogeny of fossil whip spiders

description: File format:.vaxml (see [38]). Title: Tomographic reconstruction of Graeophonus anglicus Pocock, 1911. Description: A 3D mesh model of Graeophonus anglicus in the VAXML interchange format. (ZIP 45.3 mb)
DOI: 10.6084/m9.figshare.c.3749399_d4
title: Additional file 2: Table S2. of Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth

description: List of the 340 candidate sRNAs reported in FA 1090 at 1, 2, 3, 4, and 5Â h in Fe minus and Fe plus growth conditions. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3749402_d1
title: Additional file 10: of HirBin: high-resolution identification of differentially abundant functions in metagenomes

description: Table showing selected samples from the Qin [25] study for the resampling analysis. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3749402_d2
title: Additional file 1: of HirBin: high-resolution identification of differentially abundant functions in metagenomes

description: Results from the statistical analysis of bins and sub-bins for the t2d (Qin [24]) dataset. (XLSX 2318Â kb)
DOI: 10.6084/m9.figshare.c.3749405_d3.v1
title: Additional file 3: of The phylogeny of fossil whip spiders

description: File format:.tnt (see [45]). Title: Cladistic matrix. Description: Cladistic matrix used in the current analysis, in a TNT ready format. (TNT 44 kb)
DOI: 10.6084/m9.figshare.c.3749402_d4.v1
title: Additional file 3: of HirBin: high-resolution identification of differentially abundant functions in metagenomes

description: Results from the gene set enrichment analysis of GO-terms for bins and sub-bins. (XLSX 584Â kb)
DOI: 10.6084/m9.figshare.c.3749402_d4
title: Additional file 3: of HirBin: high-resolution identification of differentially abundant functions in metagenomes

description: Results from the gene set enrichment analysis of GO-terms for bins and sub-bins. (XLSX 584Â kb)
DOI: 10.15468/dl.b7pkhh
title: Occurrence Download

description: A dataset containing 611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cantherhines pullus (Ranzani, 1842)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 611 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039188-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4h9pqr
title: Occurrence Download

description: A dataset containing 3868 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "Country is Russian Federation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Zootoca Wagler, 1830"
 ]
}

 The dataset includes 3868 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039187-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3749492_d3.v1
title: Additional file 3: of A reference floral transcriptome of sexual and apomictic Paspalum notatum

description: Comparison of mRNA sequences of P. notatum deposited at Genbank (July 2016) with the assembled isotigs of the 454/Roche sexual and apomictic libraries. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3749492_d6.v1
title: Additional file 6: of A reference floral transcriptome of sexual and apomictic Paspalum notatum

description: Transcripts differentially represented at the apomictic and sexual libraries at p-value ≤ 0.01 and logFC ≥ 3. (XLSX 888 kb)
DOI: 10.6084/m9.figshare.c.3749492_d4.v1
title: Additional file 4: of A reference floral transcriptome of sexual and apomictic Paspalum notatum

description: Annotation of isotigs originated from the global assembly. (XLSX 7203 kb)
DOI: 10.6084/m9.figshare.c.3749492_d3
title: Additional file 3: of A reference floral transcriptome of sexual and apomictic Paspalum notatum

description: Comparison of mRNA sequences of P. notatum deposited at Genbank (July 2016) with the assembled isotigs of the 454/Roche sexual and apomictic libraries. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3749492_d4
title: Additional file 4: of A reference floral transcriptome of sexual and apomictic Paspalum notatum

description: Annotation of isotigs originated from the global assembly. (XLSX 7203 kb)
DOI: 10.6084/m9.figshare.c.3749492_d6
title: Additional file 6: of A reference floral transcriptome of sexual and apomictic Paspalum notatum

description: Transcripts differentially represented at the apomictic and sexual libraries at p-value ≤ 0.01 and logFC ≥ 3. (XLSX 888 kb)