cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pjbham
title: Occurrence Download

description: A dataset containing 999 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chrysichthys ogooensis, Chrysichthys okae, Chrysichthys ornatus, Chrysichthys platycephalus, Chrysichthys polli, Chrysichthys punctatus, Chrysichthys sharpii, Chrysichthys stappersii, Chrysichthys teugelsi, Chrysichthys thonneri, Chrysichthys thysi, Chrysichthys turkana, Chrysichthys uniformis, Chrysichthys wagenaari, Chrysichthys walkeri, Cirrhinus cirrhosus, Citharichthys stampflii, Citharidium ansorgii, Citharinops distichodoides, Citharinus citharus, Citharinus congicus, Citharinus eburneensis, Citharinus gibbosus, Citharinus latus, Citharinus macrolepis, Clariallabes attemsi, Clariallabes brevibarbis, Clariallabes centralis, Clariallabes heterocephalus, Clariallabes laticeps, Clariallabes longicauda, Clariallabes manyangae, Clariallabes melas, Clariallabes mutsindoziensis, Clariallabes petricola, Clariallabes platyprosopos, Clariallabes simeonsi, Clariallabes teugelsi, Clariallabes uelensis, Clariallabes variabilis, Clarias agboyiensis, Clarias albopunctatus, Clarias alluaudi, Clarias angolensis, Clarias anguillaris, Clarias buettikoferi, Clarias buthupogon, Clarias camerunensis, Clarias cavernicola, Clarias dhonti, Clarias dumerilii, Clarias ebriensis, Clarias engelseni, Clarias gabonensis, Clarias gariepinus, Clarias hilli, Clarias jaensis, Clarias laeviceps, Clarias lamottei, Clarias liocephalus, Clarias longior, Clarias maclareni, Clarias macromystax, Clarias ngamensis, Clarias nigromarmoratus, Clarias pachynema, Clarias platycephalus, Clarias salae, Clarias stappersii, Clarias submarginatus, Clarias theodorae, Clarias werneri, Clarotes laticeps, Clupeocharax schoutedeni, Clypeobarbus bellcrossi, Clypeobarbus bomokandi, Clypeobarbus congicus, Clypeobarbus hypsolepis, Clypeobarbus matthesi, Clypeobarbus pleuropholis, Clypeobarbus pseudognathodon, Clypeobarbus schoutedeni, Cobitis maroccana, Coelotilapia joka, Congocharax olbrechtsi, Congochromis dimidiatus, Congochromis pugnatus, Congochromis sabinae, Congochromis squamiceps, Congoglanis alula, Congolapia bilineata, Congothrissa gossei, Congresox talabonoides, Copadichromis atripinnis, Copadichromis azureus, Copadichromis borleyi, Copadichromis chizumuluensis, Copadichromis chrysonotus, Copadichromis cyaneus, Copadichromis cyanocephalus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((28.1382 -6.9401,19.1382 -6.9401,19.1382 -15.9401,28.1382 -15.9401,28.1382 -6.9401))"
 ]
}

 The dataset includes 999 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006971-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7sbrmm
title: Occurrence Download

description: A dataset containing 25366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Colutea arborescens"
 ]
}

 The dataset includes 25366 records from 482 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006972-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7266/n7-f3tw-xv54
title: Radium isotopes released into the aqueous phase during oil degradation: Deepwater Horizon oil incubations
DOI: 10.5281/zenodo.15597346
title: A METHOD FOR IDENTIFYING AND MONITORING LANDSLIDES USING SENTINEL-1 IMAGERY AND PERMANENT SCATTERER ANALYSIS
DOI: 10.5281/zenodo.15597347
title: A METHOD FOR IDENTIFYING AND MONITORING LANDSLIDES USING SENTINEL-1 IMAGERY AND PERMANENT SCATTERER ANALYSIS
DOI: 10.6084/m9.figshare.29995030
title: Ancient environmental DNA papers from the tropics and subtropics, literature review results

description: We conducted a systematic literature review of scientific publications on ancient environmental DNA research in tropical and subtropical countries. We considered studies as tropical or subtropical if samples were obtained between 0 - 36 degrees of latitude on both hemispheres. In addition, we considered additional studies from Japan and South America if samples were obtained from areas defined as subtropical between 1991 - 2020 by the Köppen climate classification. At conceptualisation, we used two search phrases: “ancient environmental DNA in the tropics and subtropics'' and “ancient environmental DNA in tropical and subtropical regions'' in Google Scholar, PubMed and Web of Science to get a general summary of studies, in addition to ascertaining that no comparable review exists. This was followed by a thorough Web of Science search (concluded on 30.7.2025, search terms listed in this FigShare project).
DOI: 10.15468/dl.qa3rpu
title: Occurrence Download

description: A dataset containing 8270 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euterpe oleracea"
 ]
}

 The dataset includes 8270 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007123-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/2thmm-5an71
title: Mesoplasma florum dual axis

description: Mesoplasma florum, dual axis, total dose 60 e/A2
description: <strong>Tilt Series Date:</strong> 2004-05-03</p>
<strong>Data Taken By:</strong> Elizabeth Wright</p>
<strong>Species / Specimen:</strong> Mesoplasma florum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Dual Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 60.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> N/A</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Overnight culture in Mycoplasma media</p>
<strong>Sample Preparation:</strong> R2/2 quantifoil, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2004-05-03-1/rawdata/</p>mfn2_60dt_s1_050304.mrc,  Tilt Series (Pixel Size 6.7 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        mfln2_60dt_s2_050304.mrc,  Tilt Series (Pixel Size 6.7 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5zwsy-cax03
title: Hyphomonas session4 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-11-01</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-11-01-31/rawdata/</p>08nov01a_b17x1_031.mrc,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-11-01-31/rawdata/08nov01a_b17x1_031.mrc"
        > <i class="download icon"></i> Download </a></p>

        08nov01a_b17x1_031_1k.rec,  Reconstruction (Pixel Size 1.26 nm), 191.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/bfee6-89s98
title: Bundles of filaments

description: Keywords: DNA stacks
description: <strong>Tilt Series Date:</strong> 2007-12-18</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-67.0°, 57.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells. </p>
<strong>Purification / Growth Conditions / Treatment:</strong> Anaerobic growth on CO2 for a month</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2007-12-18-3/rawdata/</p>spore2.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2007-12-18-3/rawdata/spore2.mrc"
        > <i class="download icon"></i> Download </a></p>

        spore2_full.rec,  Reconstruction (Pixel Size 2.518 nm), 320.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2007-12-18-3/3dimage_1326/spore2_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8gv20-zxn56
title: HUVECs infx pNLGFPBglI

description: Raw data files of HUVECs infx pNLGFPBglI
description: <strong>Tilt Series Date:</strong> 2013-06-15</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> pNLGFPBglI obtained from Irvin Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole cells were grown on Au finder grids and infected with pNLGFPBglI. Sample frozen 24h post infection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-06-15-12/rawdata/</p>13jun14_C160_2_HUVECspNLBglI24hPI_AT5BT1_0004.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        13jun14_C160_2_HUVECspNLBglI24hPI_AT5BT1_0004_part121_16.rec,  Reconstruction (Pixel Size 2.0 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.343ec9
title: Occurrence Download

description: A dataset listing the 682033 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is International Barcode of Life project (iBOL)"
 ]
}

 The dataset's 682033 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007091-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/edd9p-ymw12
title: gold labeled CheA- in vitro

description: post wash sample - gold labeled CheA, 1.8 nm gold, post ternary formation snap rxn.
description: <strong>Tilt Series Date:</strong> 2013-03-22</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 41000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Heather Hodge and Laura Kiessling</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Buffer: 1x Snap + 1mM DTT 50 mM Tris Hcl pH 7.5, 100 mM Ncl, 0.1% Tween-200)</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-03-22-65/rawdata/</p>HTH1B_10019.mrc,  Tilt Series (Pixel Size 0.2989 nm), 1.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-03-22-65/rawdata/HTH1B_10019.mrc"
        > <i class="download icon"></i> Download </a></p>

        HTH1B_10019_part67_3.rec,  Reconstruction (Pixel Size 0.5978 nm), 2.8 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dgz14-55656
title: Hyphomonas session6 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-12-09</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-12-09-19/rawdata/</p>08dec09a_md2a_019.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-12-09-19/rawdata/08dec09a_md2a_019.mrc"
        > <i class="download icon"></i> Download </a></p>

        08dec09a_md2a_019_1k.rec,  Reconstruction (Pixel Size 1.548 nm), 154.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/80r2j-h4341
title: mature HIV-1

description: mature HIV-1, dual axis, total dose 120 e/A2
description: <strong>Tilt Series Date:</strong> 2005-04-27</p>
<strong>Data Taken By:</strong> Elizabeth Wright</p>
<strong>Species / Specimen:</strong> mature HIV-1</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Dual Axis, tilt range: (-62.0°, 62.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 4.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> N/A</p>
<strong>Purification / Growth Conditions / Treatment:</strong> prepared by the Sundquist lab</p>
<strong>Sample Preparation:</strong> R0.6/1 quantifoil, 10 nm gold, 100% humidity</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2005-04-27-1/rawdata/</p>hiv2005427_h_41kx_4um_pos6.mrc,  Tilt Series (Pixel Size 5.6 nm), 537.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        hiv2005427_h_41kx_6um_pos5.mrc,  Tilt Series (Pixel Size 5.6 nm), 537.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3vwrt-ym129
title: Hyphomonas session5 27KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-11-18</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-11-18-17/rawdata/</p>08nov18a_b620_1_020.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08nov18a_b620_1_020_1k.rec,  Reconstruction (Pixel Size 1.548 nm), 112.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/r3t06-ykp46
title: FtsA14hr-FtsZG109S3hr o/e

description: Raw data files of FtsA14hr-FtsZG109S3hr o/e
description: <strong>Tilt Series Date:</strong> 2008-10-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (63.0°, -63.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Strain EG422 constructed by Erin Goley, data collected by Zhuo Li</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The cells were induced with xylose for 11 hrs (FzlA), and then induced with vanillate for 3 hrs (FtsZG109S).</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-10-21-5/rawdata/</p>08oct21a_bx718_006.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        zap006.png,  307.7 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-10-21-5/file_2494/zap006.png"
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DOI: 10.22002/myy1j-v3662
title: Hyphomonas session2 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-08-29</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-08-29-33/rawdata/</p>08aug29b_a1_074.mrc,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08aug29b_a1_074_1k.rec,  Reconstruction (Pixel Size 1.264 nm), 128.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>