cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29243201
title: Additional file 1 of Prevalence of Toxocara infection and associated risk factors: a cross-sectional study in Zhejiang, China

description: Additional file 1
DOI: 10.6084/m9.figshare.29243201.v1
title: Additional file 1 of Prevalence of Toxocara infection and associated risk factors: a cross-sectional study in Zhejiang, China

description: Additional file 1
DOI: 10.6084/m9.figshare.29243217.v1
title: Additional file 2 of Matrix stiffness-induced IKBKE and MAPK8 signaling drives a phenotypic switch from DCIS to invasive breast cancer

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.29243220.v1
title: Additional file 3 of Matrix stiffness-induced IKBKE and MAPK8 signaling drives a phenotypic switch from DCIS to invasive breast cancer

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29243204
title: Additional file 1 of Mosses as extraordinary reservoir of microbial diversity: a comparative analysing of co-occurring ‘plant-moss twins’ in natural alpine ecosystem

description: Supplementary Material 1: Supplementary Table 1 provides detailed sampling information including twin pair id, sampling coordinates, habitat type, host plant identity (vascular plant or moss), and taxonomic classification.
DOI: 10.6084/m9.figshare.29243220
title: Additional file 3 of Matrix stiffness-induced IKBKE and MAPK8 signaling drives a phenotypic switch from DCIS to invasive breast cancer

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29243223
title: Additional file 4 of Matrix stiffness-induced IKBKE and MAPK8 signaling drives a phenotypic switch from DCIS to invasive breast cancer

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.29243217
title: Additional file 2 of Matrix stiffness-induced IKBKE and MAPK8 signaling drives a phenotypic switch from DCIS to invasive breast cancer

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.29243291
title: Additional file 1 of Fat-rich diet promotes microbiome-dependent ATP synthesis in sheep model

description: Additional file 1: Table S1 Ingredient and nutrient composition of the experimental diets. Table S2 Sequencing data of the 59 GIT samples among the three regions of lambs. Table S3 Regional differences in microbial taxa at the phylum level among three GIT regions in sheep fed carbohydrate-rich diet or far-rich diet. Table S4 Regional differences in microbial taxa at the genus level among three GIT regions in sheep fed carbohydrate-rich diet or far-rich diet. Table S5 Key features of Co-occurrence network at genus level (&gt; 0.1%) among three gastrointestinal regions of sheep fed the carbohydrate-rich (CR group) and fat-rich diet (FR group). Table S6 Regional differences in KEGG pathway level 2 among the three GIT regions in sheep fed carbohydrate-rich diet or far-rich diet. Table S7 Differences in rumen microbiome metabolic pathways at KEGG level 3 in sheep fed carbohydrate-rich diet or far-rich diet. Table S8 The comparison of microbial genes related to rumen carbonhydrate metabolism of sheep fed carbohydrate-rich diet or far-rich diet. Table S9 Differences in ileal microbiome pathways at KEGG level 3 in sheep fed carbohydrate-rich diet or far-rich diet.
DOI: 10.6084/m9.figshare.28925038
title: Additional file 1 of HTLV-1 Japanese subgroup in Brazil: phylogenetic and migratory history

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.29243291.v1
title: Additional file 1 of Fat-rich diet promotes microbiome-dependent ATP synthesis in sheep model

description: Additional file 1: Table S1 Ingredient and nutrient composition of the experimental diets. Table S2 Sequencing data of the 59 GIT samples among the three regions of lambs. Table S3 Regional differences in microbial taxa at the phylum level among three GIT regions in sheep fed carbohydrate-rich diet or far-rich diet. Table S4 Regional differences in microbial taxa at the genus level among three GIT regions in sheep fed carbohydrate-rich diet or far-rich diet. Table S5 Key features of Co-occurrence network at genus level (&gt; 0.1%) among three gastrointestinal regions of sheep fed the carbohydrate-rich (CR group) and fat-rich diet (FR group). Table S6 Regional differences in KEGG pathway level 2 among the three GIT regions in sheep fed carbohydrate-rich diet or far-rich diet. Table S7 Differences in rumen microbiome metabolic pathways at KEGG level 3 in sheep fed carbohydrate-rich diet or far-rich diet. Table S8 The comparison of microbial genes related to rumen carbonhydrate metabolism of sheep fed carbohydrate-rich diet or far-rich diet. Table S9 Differences in ileal microbiome pathways at KEGG level 3 in sheep fed carbohydrate-rich diet or far-rich diet.
DOI: 10.6084/m9.figshare.29243307.v1
title: Additional file 3 of Performance of broad-spectrum targeted next-generation sequencing in lower respiratory tract infections in ICU patients: a prospective observational study

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29243319.v1
title: Additional file 2 of Identifying associations of de novo noncoding variants with autism through integration of gene expression, sequence, and sex information

description: Additional file 2. Supplementary Tables S1, S4, S5 and S6.
DOI: 10.6084/m9.figshare.28925038.v1
title: Additional file 1 of HTLV-1 Japanese subgroup in Brazil: phylogenetic and migratory history

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.29243273
title: Additional file 2 of Production of functional recombinant antibodies in Dictyostelium discoideum

description: Supplementary Material 2. Supplementary Fig. 2: Full-length SDS-PAGE gels electrophoresis used to create the panel d in Figure 1. Each lane (numbered from 1 to 10) in panel d was obtained from 4 different gels (a, b, c and d).
DOI: 10.6084/m9.figshare.29243315
title: Additional file 1 of Enhancing medical assessment strategies: a comparative study between structured, traditional and hybrid viva-voce assessment

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.29243315.v1
title: Additional file 1 of Enhancing medical assessment strategies: a comparative study between structured, traditional and hybrid viva-voce assessment

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28925038.v2
title: Additional file 1 of HTLV-1 Japanese subgroup in Brazil: phylogenetic and migratory history

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.28925041
title: Additional file 2 of HTLV-1 Japanese subgroup in Brazil: phylogenetic and migratory history

description: Supplementary material 2.
DOI: 10.6084/m9.figshare.28925041.v1
title: Additional file 2 of HTLV-1 Japanese subgroup in Brazil: phylogenetic and migratory history

description: Supplementary material 2.
DOI: 10.6084/m9.figshare.28925041.v2
title: Additional file 2 of HTLV-1 Japanese subgroup in Brazil: phylogenetic and migratory history

description: Supplementary material 2.
DOI: 10.6084/m9.figshare.29243273.v1
title: Additional file 2 of Production of functional recombinant antibodies in Dictyostelium discoideum

description: Supplementary Material 2. Supplementary Fig. 2: Full-length SDS-PAGE gels electrophoresis used to create the panel d in Figure 1. Each lane (numbered from 1 to 10) in panel d was obtained from 4 different gels (a, b, c and d).
DOI: 10.6084/m9.figshare.29243307
title: Additional file 3 of Performance of broad-spectrum targeted next-generation sequencing in lower respiratory tract infections in ICU patients: a prospective observational study

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29243319
title: Additional file 2 of Identifying associations of de novo noncoding variants with autism through integration of gene expression, sequence, and sex information

description: Additional file 2. Supplementary Tables S1, S4, S5 and S6.
DOI: 10.6084/m9.figshare.29243322
title: Additional file 3 of Identifying associations of de novo noncoding variants with autism through integration of gene expression, sequence, and sex information

description: Additional file 3. List of SSC de novo variants used in analyses and their processed information all based on the GRCh37 assembly.
DOI: 10.6084/m9.figshare.29243322.v1
title: Additional file 3 of Identifying associations of de novo noncoding variants with autism through integration of gene expression, sequence, and sex information

description: Additional file 3. List of SSC de novo variants used in analyses and their processed information all based on the GRCh37 assembly.
DOI: 10.6084/m9.figshare.29243324
title: Additional file 4 of Enhancing medical assessment strategies: a comparative study between structured, traditional and hybrid viva-voce assessment

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.29243324.v1
title: Additional file 4 of Enhancing medical assessment strategies: a comparative study between structured, traditional and hybrid viva-voce assessment

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.29243333
title: Additional file 2 of DNA G-quadruplex structures act as functional elements in α- and β-globin enhancers

description: Additional file 2: Table S1. Excel table of all results of differential analysis of protein affinity capture experiments.
DOI: 10.6084/m9.figshare.29243333.v1
title: Additional file 2 of DNA G-quadruplex structures act as functional elements in α- and β-globin enhancers

description: Additional file 2: Table S1. Excel table of all results of differential analysis of protein affinity capture experiments.
DOI: 10.6084/m9.figshare.29243336
title: Additional file 3 of DNA G-quadruplex structures act as functional elements in α- and β-globin enhancers

description: Additional file 3: Table S2. Excel table of oligonucleotide sequences used in the paper.
DOI: 10.6084/m9.figshare.29243336.v1
title: Additional file 3 of DNA G-quadruplex structures act as functional elements in α- and β-globin enhancers

description: Additional file 3: Table S2. Excel table of oligonucleotide sequences used in the paper.
DOI: 10.15468/dl.gmhq2e
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Country is Macao",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Liliopsida",
 "Year 1970-2024"
 ]
}

 The dataset includes 98 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025197-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dq9rsf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xenodermichthys copei (Gill, 1884)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-8.8018 33.6743,-9.0352 33.4562,-9.0352 28.8496,-0.0352 28.8496,-0.0352 36.4794,-0.2209 36.3968,-1.3537 36.1876,-1.6551 35.769,-2.0234 35.5842,-2.5138 35.6803,-2.6212 36.2387,-2.9881 36.451,-3.4424 36.249,-3.506 35.7605,-4.4004 35.671,-4.7609 35.8337,-4.8512 36.1709,-5.2296 36.4083,-6.2415 36.1841,-7.168 34.4152,-8.8018 33.6743))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010565-250525065834625/datasets/export for details.
DOI: 10.15468/dl.mebzsa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudobarbus burgi (Boulenger, 1911)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((32.064 -28.9416,32.4847 -28.5786,30.5701 -28.5786,30.5701 -30.7329,30.6252 -30.6659,31.4179 -29.4257,31.8178 -29.0299,32.064 -28.9416))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021918-250525065834625/datasets/export for details.
DOI: 10.15468/dl.antjg9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cercis siliquastrum",
 "Country is Libya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050003-250811113504898/datasets/export for details.
DOI: 10.15468/dl.szqxj6
title: Occurrence Download

description: A dataset containing 9069 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chilopoda",
 "Year 2017-2019",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Occurrence evidence, Observation)"
 ]
}

 The dataset includes 9069 records from 244 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050004-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smk9fq
title: Occurrence Download

description: A dataset listing the 491 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Myanmar",
 "OccurrenceStatus is Present",
 "TaxonKey is Bryophyta"
 ]
}

 The dataset's 491 records were derived from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021443-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hav3nc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vernicia cordata",
 "Country is Sao Tome and Principe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025281-250811113504898/datasets/export for details.
DOI: 10.15468/dl.r94jzs
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vernicia cordata",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 84 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025280-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21954/ou.rd.29890625
title: Supplementary materials for MPhil thesis - "The implications of using small scale techniques for secondary school chemistry practicals"

description: This dataset comprises the files contained on a CD-ROM which was attached to the thesis when it was submitted in 2013. It was uploaded to ORDO in 2025 for preservation purposes. For more information, please refer to the thesis “The implications of using small scale techniques for secondary school chemistry practicals” via ORO.AbstractThis thesis reviews the implications of using reduced scale chemistry practicals in UK secondary schools and investigates the following areas:-<br><br>• The background to the development of reduced scale practicals and processes, placing this in the context of the learner;<br>• The views of teachers on the subject of practicals;<br>• How best to deliver chemistry teaching to maximize students’ engagement and learning;<br>• Whether reduced scale practicals have a place in modem chemistry teaching and learning within secondary schools;<br>• Whether reduced scale chemistry practicals offer educational benefit compared with current alternatives;<br>• The barriers to change and the drivers for change which affect teachers and educational systems.<br><br>The work discusses how reduced scale chemistry practicals might be used in UK secondary schools in the future, having assessed how it is used in school laboratories to date. The writer describes experimental and technical development work undertaken to adapt, improve or create equipment to broaden the range of reduced scale practicals available for use in the school laboratory. Suggestions are given for how to encourage the use of reduced scale practical techniques in UK schools (if it is felt necessary). Possible threats which may limit future uptake are identified alongside drivers which could encourage adoption of the teaching technique.
DOI: 10.21954/ou.rd.29890625.v1
title: Supplementary materials for MPhil thesis - "The implications of using small scale techniques for secondary school chemistry practicals"

description: This dataset comprises the files contained on a CD-ROM which was attached to the thesis when it was submitted in 2013. It was uploaded to ORDO in 2025 for preservation purposes. For more information, please refer to the thesis “The implications of using small scale techniques for secondary school chemistry practicals” via ORO.AbstractThis thesis reviews the implications of using reduced scale chemistry practicals in UK secondary schools and investigates the following areas:-<br><br>• The background to the development of reduced scale practicals and processes, placing this in the context of the learner;<br>• The views of teachers on the subject of practicals;<br>• How best to deliver chemistry teaching to maximize students’ engagement and learning;<br>• Whether reduced scale practicals have a place in modem chemistry teaching and learning within secondary schools;<br>• Whether reduced scale chemistry practicals offer educational benefit compared with current alternatives;<br>• The barriers to change and the drivers for change which affect teachers and educational systems.<br><br>The work discusses how reduced scale chemistry practicals might be used in UK secondary schools in the future, having assessed how it is used in school laboratories to date. The writer describes experimental and technical development work undertaken to adapt, improve or create equipment to broaden the range of reduced scale practicals available for use in the school laboratory. Suggestions are given for how to encourage the use of reduced scale practical techniques in UK schools (if it is felt necessary). Possible threats which may limit future uptake are identified alongside drivers which could encourage adoption of the teaching technique.
DOI: 10.5281/zenodo.15584942
title: Automatic seismic event locations in Germany using TieBeNN

description: 🗂️ Description

 

This repository contains automatic absolute locations of local seismic events in Germany and surrounding regions, computed using the automatic location system TieBeNN (TiefenBestimmung mittels Neuronaler Netze).

 

Event date times and epicenter coordinates were taken from manual catalogs to test TieBeNN. All events have:





 A minimum local magnitude of 1.0







A tectonic origin



The following event catalogs are included:





automatic_catalog_2021-2023_tiebenn.csv – 591 local events from the BGR catalog (2021–2023)  

automatic_catalog_2024_BENS.csv – 55 events from the BENS catalog (2024)

automatic_catalog_2024_LED.csv – 50 events from the LED catalog (2024)

automatic_catalog_2024_SED.csv – 50 events from the SED catalog (2024)

automatic_catalog_2024_TSN_EdB.csv – 50 events from the TSN catalog (2024), located using BGR’s 1D velocity model 

automatic_catalog_2024_TSN_WB2012.csv – 50 events from the TSN catalog (2024), located using the WB2012 1D velocity model (Růžek & Horálek, 2013)



🔹 Abbreviations:

BGR = Bundesanstalt für Geowissenschaften und Rohstoffe  

BENS = Erdbebenstation Bensberg  

SED = Schweizerischer Erdbebendienst  

LED = Landeserdbebendienst Baden-Württemberg  

TSN = Thüringer Seismologisches Netz  

 

📊 Catalog structure

 

Each CSV file contains:





Hypocenter coordinates and uncertainties







Eight normalized features used to compute the Location Quality Score (LQS)



 

These are the columns and their descriptions:

 

datetime: Event origin time

latitude / longitude (°): Epicenter coordinates

depth (km): Hypocentral depth

unc_x / unc_y / unc_z (km): location uncertainty in x, y, z directions

norm.det.cov: Normalized location covariance

norm.sta.den: Normalized station density

norm.azgap: Normalized azimuthal gap

norm.sec.azgap: Normalized secondary azimuthal gap

norm.aui: Normalized azimuthal uniformity index

norm.near.sta: Normalized nearest station distance

norm.rms: Normalized RMS of travel time residuals

norm.npicks: Normalized number of phase picks

LQS: Location Quality Score

 

🤖 About TieBeNN

 

TieBeNN is a Python-based wrapper that integrates open-source, machine-learning tools for:





Phase picking







Denoising







Phase association



Probabilistic hypocenter estimation via NonLinLoc

 

🔗 Code: https://github.com/Cthuulhaa/tiebenn  

🔗 DOI: https://zenodo.org/records/15384316  

📘 Docs: https://tiebenn.readthedocs.io/en/latest

 

---

 

📄 Citation

 

A paper describing TieBeNN and the Location Quality Score (LQS) is currently in preparation. A pre-print will be available soon!  

In the meantime, feel free to use this dataset and cite this Zenodo record.
DOI: 10.6084/m9.figshare.28945844
title: (Near-complete) T2T assembly of the Gila monster, data freeze (May 2025)

description: Curated genome assembly of a female Gila monster (<i>Heloderma suspectum</i>).Assembled from UL-ONT and phased with HiC data using Hifiasm (https://github.com/chhylp123/hifiasm) and scaffolded with HiC data using Pretext (https://github.com/sanger-tol/PretextView).Gene annotations were produced using Liftoff from the Southern Alligator Lizard (<i>Elgaria multicarinata</i>) genome RefSeq annotations (GCF_023053635.1).Small structural variants were called using longcallD (https://github.com/yangao07/longcallD). [primary only]Satellite array annotations with anianns (https://github.com/marbl/anianns). [primary only]Transposable element and repeat annotations using EarlGrey (https://github.com/TobyBaril/EarlGrey). [primary only]Manual annotations of psuedoautosomal regions (PAR) regions of the ZW sex chromosomes. [primary only]
DOI: 10.6084/m9.figshare.28945844.v5
title: (Near-complete) T2T assembly of the Gila monster, data freeze (May 2025)

description: Curated genome assembly of a female Gila monster (<i>Heloderma suspectum</i>).Assembled from UL-ONT and phased with HiC data using Hifiasm (https://github.com/chhylp123/hifiasm) and scaffolded with HiC data using Pretext (https://github.com/sanger-tol/PretextView).Gene annotations were produced using Liftoff from the Southern Alligator Lizard (<i>Elgaria multicarinata</i>) genome RefSeq annotations (GCF_023053635.1).Small structural variants were called using longcallD (https://github.com/yangao07/longcallD). [primary only]Satellite array annotations with anianns (https://github.com/marbl/anianns). [primary only]Transposable element and repeat annotations using EarlGrey (https://github.com/TobyBaril/EarlGrey). [primary only]Manual annotations of psuedoautosomal regions (PAR) regions of the ZW sex chromosomes. [primary only]
DOI: 10.6084/m9.figshare.28945844.v4
title: (Near-complete) T2T assembly of the Gila monster, data freeze (May 2025)

description: Curated genome assembly of a female Gila monster (<i>Heloderma suspectum</i>).Assembled from UL-ONT and phased with HiC data using Hifiasm (https://github.com/chhylp123/hifiasm) and scaffolded with HiC data using Pretext (https://github.com/sanger-tol/PretextView).Gene annotations were produced using Liftoff from the Southern Alligator Lizard (<i>Elgaria multicarinata</i>) genome RefSeq annotations (GCF_023053635.1).Small structural variants were called using longcallD (https://github.com/yangao07/longcallD).<br><br><br>