cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8377853
title: River Sediment Database-Amazon (RivSed-Amazon)

description: The River Sediment Database-Amazon (RivSed-Amazon) database contains surface suspended sediment concentrations (SSC) derived from Landsat 5, 7, and 8 Level 1 Collection 1 surface reflectance from all rivers in the Amazon River Basin that are ~60 meters wide or greater. SSC represent spatially integrated "reach" median concentrations over the footprint of SWOT River Database (SWORD, Altenau et al., 2021) centerlines (median reach length = 10 km) where high quality river water pixels were detected within each Landsat image from 1984-2018. 


The methods used to produce this database were initially developed in the following publications:



	
Gardner, J., Pavelsky, T. M., Topp, S., Yang, X., Ross, M. R., & Cohen, S. (2023). Human activities change suspended sediment concentration along rivers. Environmental Research Letters. https://iopscience.iop.org/article/10.1088/1748-9326/acd8d8 and 
	
Gardner et al. (2020). The color of rivers. Geophysical Research Letters.  https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2020GL088946



The publication associated with RivSed-Amazon is in review.


Files:


1) Metadata (rivSed_Amazon_metadata_v1.01.pdf): Description key data files associated with this repository. 


2) RiverSed (RiverSed_Amazon_v1.1.txt). Table of  SSC  and associated data that is joinable to SWORD based on the ""reach_id".


3) Shapefile of river centerlines over South America to which the reflectance data can be attached (SWORD_SA.shp).


4) Shapefile of the reach polygons associated with SWORD_SA over the Amazon Basin. (reach_polygons_amazon.shp).


5) SSC-Landsat matchup database with extended metadata on locations and in-situ data (train_full_v1.1.csv).


6) The final training data used to build the xgboost machine learning model (train_v1.1.csv).


7) The xgboost model that can make SSC predictions over inland waters in USA using Landsat bands/band combinations (tssAmazon_model_v1.1.rds and .rda). The model can only be loaded and used in R at this time.


8) The correction coefficients applied to Landsat 5 and 8 to harmonized surface reflectance across Landsat 5,7,8 and over all bands to enable time series analysis.
DOI: 10.5281/zenodo.13373116
title: Clickbait scores of links from worldwide news websites 2016-2023

description: This .7z file contains an SQLite DB with 451 million clickbait scores produced by a clickbait detector for links from a sample of news sites from the common crawl. Note that the scores were assigned by a program which does not perform at 100% accuracy all the time - some error is present.

Columns are: id number, date, clickbait score (1.0 being likely to be clickbait).

Note this does NOT include any hyperlink text or clickbait detector feature scores.
DOI: 10.5281/zenodo.10847728
title: Supplementary Data for ZeroPM D2.3 - Lessons learnt from previous applications of the essential-use concept

description: This dataset contains the data collected for all the studies which are mentioned in the ZeroPM deliverable D2.3 titled "Lessons learnt from previous applications of the essential-use concept".
DOI: 10.5281/zenodo.13750996
title: 18F-FEOBV Mouse Brain Data from: Multimodal gradients of basal forebrain connectivity across the neocortex

description: A preprocessed mouse brain 18F-FEOBV microPET dataset (.nii) used in Figure 7G from Multimodal gradients of basal forebrain connectivity across the neocortex. Details regarding data acquisition and processing can be found in the Methods of the paper.
DOI: 10.5281/zenodo.13722786
title: Proteome Data for Amyloid Atlas

description: Datafile for collected and calculated data for proteins in Amyloid Atlas
DOI: 10.5281/zenodo.10887311
title: Mapping Deformation Processes using InSAR PS+DS Timeseries Estimation in Northern California, U.S.
DOI: 10.5281/zenodo.12793032
title: DataSet_BeyondSurfaceStudy

description: Data Set of the Manuscript: Beyond the Surface: Gut Microbiome and Implicit learning in Anorexia nervosa
DOI: 10.5281/zenodo.8320026
title: Dataset for: Cover crop inclusion and residue retention improves soybean production and physiology in drought conditions

description: Release of data for soybean physiology paper.
description: The U.S. Department of Agriculture (USDA) prohibits discrimination in all its programs and activities on the basis of race, color, national origin, age, disability, and where applicable, sex, marital status, familial status, parental status, religion, sexual orientation, genetic information, political beliefs, reprisal, or because all or part of an individual's income is derived from any public assistance program. (Not all prohibited bases apply to all programs.) Persons with disabilities who require alternative means for communication of program information (Braille, large print, audiotape, etc.) should contact USDA's TARGET Center at (202) 720-2600 (voice and TDD). To file a complaint of discrimination, write to USDA, Director, Office of Civil Rights, 1400 Independence Avenue, S.W., Washington, D.C. 20250-9410, or call (800) 795-3272 (voice) or (202) 720-6382 (TDD). USDA is an equal opportunity provider and employer."
DOI: 10.5281/zenodo.13724374
title: Hexapeptide propensity scores and associated metadata

description: Amyloid propensity scores for all possible hexapeptide sequences and associated metadata
DOI: 10.5281/zenodo.13725058
title: Test Dataset

description: Dataset (test set) used for training of the neural network
DOI: 10.5281/zenodo.11628941
title: AI course names from undergraduate programs

description: We collected 750 course names covered by 29 universities’ undergraduate AI education programs, providing a comprehensive dataset for analysis on the AI curriculum.
DOI: 10.5281/zenodo.13675637
title: Proteome Data for A. thaliana

description: Datafile with calculated metrics and associated data for A. thaliana proteome
DOI: 10.5281/zenodo.13120679
title: Differential interference contrast (DIC) image of unstained living HepG2 human liver cancer cells

description: Introduction

This dataset is associated with our submission to Computers in Biology and Medicine, titled "Accurate Detection and Instance Segmentation of Unstained Living Adherent Cells in Differential Interference Contrast Images". The submission number for this manuscript is CIBM-D-23-09623R1.

Authors: Fei Pan, Yutong Wu, Kangning Cui, Shuxun Chen, Yanfang Li, Yaofang Liu, Adnan Shakoor, Han Zhao, Beijia Lu, Shaohua Zhi, Raymond Hon-Fu Chan, Dong Sun

Dataset Description

Our dataset comprises 520 differential interference contrast (DIC) images of 12,198 unstained HepG2 human liver cancer cells, each with a corresponding fluorescence image stained with calcein acetoxymethyl (AM), ensuring high-quality ground-truth annotations. Unique in addressing the multi-state nature of adherent cells commonly seen in wet labs, it includes both healthy and unhealthy cells in a single image, providing a valuable resource for studying multi-state cell detection and instance segmentation.Citation

We kindly request that researchers who use this dataset cite both our paper and this dataset. This will help acknowledge the work and facilitate further advancements in the field.

Please cite as follows:

Paper:Pan, F., Wu, Y., Cui, K., Chen, S., Li, Y., Liu, Y., Shakoor, A., Zhao, H., Lu, B., Zhi, S., Chan, R. H.-F., & Sun, D. "Accurate detection and instance segmentation of unstained living adherent cells in differential interference contrast images,” Computers in Biology and Medicine, vol. 182, p. 109151, Nov. 2024, doi: 10/g5p9d8.

Dataset:Pan, F., Chen, S., Li, Y., Shakoor, A., Zhao, H., & Sun, D. (2024). Differential interference contrast (DIC) image of unstained living HepG2 human liver cancer cells. Zenodo. 

Thank you for your interest and support in our work. We look forward to seeing the innovative research that this dataset will enable.
DOI: 10.15468/dl.dx7m2u
title: Occurrence Download

description: A dataset containing 12168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plecotus austriacus (J.Fischer, 1829)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 12168 records from 694 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034685-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6gzjc8
title: Occurrence Download

description: A dataset containing 20831 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepus timidus Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 20831 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034686-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ugcu8
title: Occurrence Download

description: A dataset listing the 56 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Computarización de la colección de moluscos holoplanctónicos del Golfo de California y Golfo de Tehuantepec"
 ]
}

 The dataset's 56 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034680-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26771899
title: Data for "Effects of winter soil warming on crop biomass carbon loss from organic matter degradation"

description: Supporting data for "Effects of winter soil warming on crop biomass carbon loss from organic matter degradation"
DOI: 10.6084/m9.figshare.26771899.v1
title: 补充Data.xlsx

description: Supporting data on the effects for Effects of winter soil warming on crop biomass carbon loss from organic matter degradation
DOI: 10.15468/dl.axw7rh
title: Occurrence Download

description: A dataset containing 554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spermophilus citellus (Linnaeus, 1766)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 554 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034687-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27131817
title: PPG, ECG y CPVs tipo 1 y tipo 2

description: Este repositorio contiene un conjunto de datos que incluye 13 registros de pacientes de la base de datos MIMIC. Cada paciente está representado por un archivo <code>.mat</code> que almacena las señales de PPG (Fotopletismografía) y ECG (Electrocardiograma) con una frecuencia de muestreo de 125 Hz.Además, este repositorio incluye scripts en MATLAB para la visualización de las señales y la detección de Complejos Prematuros Ventriculares (CPVs) tipo 1 y tipo 2. Estos scripts permiten realizar análisis detallados de las señales PPG y ECG para cada paciente.Estructura del DatasetEl repositorio está compuesto por los siguientes archivos y directorios:<b>Archivos XXXm</b><code><strong>.mat</strong></code>: Contienen la información de las señales PPG y ECG de los pacientes. Cada archivo de la forma <code>m.mat</code> corresponde a un paciente específico y contiene las muestras de las señales obtenidas en un entorno clínico.<b>Archivos señales_seleccionadasXXX</b><code><strong>.mat</strong></code>: Contiene específicamente la información de las señales de los canales PPG y ECG de los archivos m.mat de cada paciente.<b>Código en MATLAB (</b><code><strong>senales_ppg_ecg_visualizacion.m.m</strong></code><b>)</b>: Un script en MATLAB diseñado para visualizar las señales ECG y PPG de cada paciente. Este código permite cargar los archivos <code>.mat</code> y mostrar un fragmento de las señales para facilitar el análisis visual. Es importante destacar que debe modificarse en esta línea del código el paciente a analizar:<br>data = load('señales_seleccionadas212.mat'); % Cargar el archivo .mat<b>Código en MATLAB (cpvs12</b><code><strong>.m</strong></code><b>)</b>: Otro script en MATLAB que implementa la detección de CPVs tipo 1 y tipo 2 en la señal PPG. Los resultados de esta detección se almacenan en un archivo CSV, que puede ser consultado posteriormente para realizar un análisis detallado de la señal.<b>Archivos de encabezado (XXX</b><code><strong>hea.txt</strong></code><b>)</b>: Estos archivos contienen las especificaciones para la selección de las señales de cada paciente, permitiendo entender la estructura y los canales disponibles en los archivos <code>.mat</code>.Descripción de las Señales<b>PPG (Fotopletismografía)</b>: Señales obtenidas mediante un sensor óptico que mide los cambios en el volumen sanguíneo en los tejidos. Estas señales son útiles para estudiar el pulso y otras características hemodinámicas de los pacientes.<b>ECG (Electrocardiograma)</b>: Señales eléctricas del corazón que se utilizan para evaluar la actividad cardíaca. Los archivos de este dataset incluyen varias derivaciones del ECG que proporcionan información detallada sobre el funcionamiento del corazón.CréditosEste conjunto de datos y los códigos asociados han sido diseñados para facilitar el análisis de señales fisiológicas y la detección de eventos cardíacos importantes, como los CPVs. Los datos provienen de la base de datos MIMIC y han sido adaptados para su uso en MATLAB.
DOI: 10.15468/dl.jpddhb
title: Occurrence Download

description: A dataset containing 16869 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (South America, North America)",
 "TaxonKey is Acropora palmata (Lamarck, 1816)"
 ]
}

 The dataset includes 16869 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034688-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7w7sg
title: Occurrence Download

description: A dataset containing 650616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Danaus plexippus (Linnaeus, 1758)"
 ]
}

 The dataset includes 650616 records from 298 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034684-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5vrmmn
title: Occurrence Download

description: A dataset containing 93188 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Castor fiber Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 93188 records from 271 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034689-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9511902
title: BBC News
DOI: 10.15468/dl.k5ehkt
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dryomys nitedula (Pallas, 1778)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 106 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034690-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fkcfbt
title: Occurrence Download

description: A dataset containing 687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sicista betulina (Pallas, 1779)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 687 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034691-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fmr2d
title: Occurrence Download

description: A dataset containing 19749 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Canis lupus Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 19749 records from 201 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034693-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhyv5d
title: Occurrence Download

description: A dataset containing 126169 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is FrogID"
 ]
}

 The dataset includes 126169 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165415-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1wvskq
title: Occurrence Download

description: A dataset containing 96360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Echinochloa crus-galli (L.) P.Beauv.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 96360 records from 430 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025381-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.es25hx
title: Occurrence Download

description: A dataset containing 1044 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pelobates vespertinus (Pallas, 1771)"
 ]
}

 The dataset includes 1044 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070659-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3276jx
title: Occurrence Download

description: A dataset containing 2623 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spinulum annotinum (L.) A.Haines",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 2623 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176054-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tf6bue
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wiborgia monoptera E.Mey."
 ]
}

 The dataset includes 133 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0143499-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.univk8
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lycorma delicatula (White, 1845)"
 ]
}

 The dataset includes 539 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025383-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zupy3
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cryptotis orophila (J.A.Allen, 1895)"
 ]
}

 The dataset includes 35 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070662-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6qbfeb
title: Occurrence Download

description: A dataset containing 35144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((89.44736 47.30111,115.11142 47.30111,115.11142 57.56234,89.44736 57.56234,89.44736 47.30111))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 35144 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182548-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pkdp4b
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asplenium goudeyi D.L.Jones"
 ]
}

 The dataset includes 33 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0143498-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fuzfw7
title: Occurrence Download

description: A dataset containing 253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "TaxonKey is Eira barbara (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 253 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025384-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.db6yse
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glochidion nadeaudii J.Florence"
 ]
}

 The dataset includes 30 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015021-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtt2w9
title: Occurrence Download

description: A dataset containing 416 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calypso bulbosa (L.) Oakes",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 416 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165456-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.