cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4225/28/570f29840516a
title: accuCLIM 30-year average Bioclimate Time Series: Accurate, high-resolution, mapped climate data for the Australian Wet Tropics World Heritage Area
DOI: 10.25903/73jy-ky07
title: Data from: Adipose tissue estimation of foraging and nesting green turtles (Chelonia mydas) using bioelectrical impedance analysis

description: <p>Dataset of the manuscript: "Adipose tissue estimation of foraging and nesting green turtles (Chelonia mydas) using bioelectrical impedance analysis.".</p>
<p>Dataset provided in .xlsx, .csv, and .ods formats.</p>
<p>Software/equipment used to create/collect the data: Body impedance measurements were subsequently performed with a handheld bioelectrical impedance spectroscopy (BIS) analyser (SFB7, Impedimed, Brisbane, QLD, Australia) following procedures outlined in Kophamel et al. (2023). The BIS device measured resistance and reactance at 256 logarithmically-spaced frequencies in the range 3-1000 kHz, and device calibration was verified daily during fieldtrips. Ten replicate impedance measurements with an interval of five seconds were recorded to account for intra-animal variability, with each measurement taking 800 ms. The extracted data of interest were resistance at infinite frequency (Rinf, predictor of total body water and fat-free mass), resistance at zero frequency (R0, predictor of extracellular water), intracellular resistance (Ri, an index of intracellular water); and, for comparison with studies using single-frequency BIA (SFBIA) devices, resistance at 50 kHz (R50), reactance at 50 kHz (Xc50) and phase angle at 50 kHz (PhA50).</p>
<p>Software/equipment used to manipulate/analyse the data: Recorded impedance data were analysed using Bioimp software (v5.4.0.3, ImpediMed Ltd, Brisbane, QLD, Australia), that calculates resistance (R, ohm), reactance (Xc, ohm) and phase angle (PhA, arctangent Xc/R, degrees) at each frequency and uses Cole analysis to obtain estimated resistance at infinite frequency (Rinf) and at zero frequency (R0) (Cornish et al. 1993) (for further details please refer to the manufacturer's website: <a href="https://www.impedimed.com/)">https://www.impedimed.com/)</a>. The extracted parameter of interest was resistance at 50 kHz (R50) for comparison with studies using the more affordable SFBIA devices. AT (kg) for each individual turtle was estimated using the equation derived in Kophamel et al. (in press).</p>
DOI: 10.6084/m9.figshare.26323522
title: Causal benefits of 25 dietary intakes on epigenetic ageing: a Mendelian randomisation study

description: DNA methylation GrimAge acceleration (DMGA) and intrinsic epigenetic age acceleration (IEAA) are important physiological markers for assessing the ageing process. Evidence from cross-sectional studies suggests that some dietary intake is associated with DMGA and IEAA. However, the causal relationship between them has yet to be elucidated. This Mendelian randomisation study uses genetic variants associated with different dietary intakes as instrumental variables to explore the causal benefits of multiple dietary intakes on DMGA and IEAA. Cheese intake, dark chocolate intake, average weekly red wine intake, dried fruit intake, fresh fruit intake, porridge intake, cereal intake, and liver intake had a negative causal association with DMGA, and poultry intake and doughnut intake had a positive causal association with DMGA (<i>p</i> &lt; 0.05). Muesli and bran cereal intake had a negative causal association with IEAA, and pineapple intake had a positive causal association with IEAA (<i>p</i> &lt; 0.05). Dietary intake positively causally associated with IEAA or DMGA may have accelerated biological ageing; conversely, dietary intake negatively causally associated with IEAA or DMGA may have contributed to delaying biological ageing. Based on genetic evidence, this study demonstrated some significant causal benefits of dietary intake on DMGA and IEAA, suggesting the possibility of intervening in DNA methylation acceleration and epigenetic age acceleration by adjusting these food intakes, thereby promoting health and delaying ageing. However, the findings of this study are exploratory and preliminary and need to be supported and validated by evidence from further clinical studies and mechanistic studies.
DOI: 10.6084/m9.figshare.26323522.v1
title: Causal benefits of 25 dietary intakes on epigenetic ageing: a Mendelian randomisation study

description: DNA methylation GrimAge acceleration (DMGA) and intrinsic epigenetic age acceleration (IEAA) are important physiological markers for assessing the ageing process. Evidence from cross-sectional studies suggests that some dietary intake is associated with DMGA and IEAA. However, the causal relationship between them has yet to be elucidated. This Mendelian randomisation study uses genetic variants associated with different dietary intakes as instrumental variables to explore the causal benefits of multiple dietary intakes on DMGA and IEAA. Cheese intake, dark chocolate intake, average weekly red wine intake, dried fruit intake, fresh fruit intake, porridge intake, cereal intake, and liver intake had a negative causal association with DMGA, and poultry intake and doughnut intake had a positive causal association with DMGA (<i>p</i> &lt; 0.05). Muesli and bran cereal intake had a negative causal association with IEAA, and pineapple intake had a positive causal association with IEAA (<i>p</i> &lt; 0.05). Dietary intake positively causally associated with IEAA or DMGA may have accelerated biological ageing; conversely, dietary intake negatively causally associated with IEAA or DMGA may have contributed to delaying biological ageing. Based on genetic evidence, this study demonstrated some significant causal benefits of dietary intake on DMGA and IEAA, suggesting the possibility of intervening in DNA methylation acceleration and epigenetic age acceleration by adjusting these food intakes, thereby promoting health and delaying ageing. However, the findings of this study are exploratory and preliminary and need to be supported and validated by evidence from further clinical studies and mechanistic studies.
DOI: 10.6084/m9.figshare.26104626
title: Identification of the serum metabolites associated with cow milk consumption in Chinese Peri-/Postmenopausal women

description: Cow milk consumption (CMC) and downstream alterations of serum metabolites are commonly considered important factors regulating human health status. Foods may lead to metabolic changes directly or indirectly through remodelling gut microbiota (GM). We sought to identify the metabolic alterations in Chinese Peri-/Postmenopausal women with habitual CMC and explore if the GM mediates the CMC-metabolite associations. 346 Chinese Peri-/Postmenopausal women participants were recruited in this study. Fixed effects regression and partial least squares discriminant analysis (PLS-DA) were applied to reveal alterations of serum metabolic features in different CMC groups. Spearman correlation coefficient was computed to detect metabolome-metagenome association. 36 CMC-associated metabolites including palmitic acid (FA(16:0)), 7alpha-hydroxy-4-cholesterin-3-one (7alphaC4), citrulline were identified by both fixed effects regression (FDR &lt; 0.05) and PLS-DA (VIP score &gt; 2). Some significant metabolite-GM associations were observed, including FA(16:0) with gut species Bacteroides ovatus, Bacteroides sp.D2. These findings would further prompt our understanding of the effect of cow milk on human health.
DOI: 10.6084/m9.figshare.26104626.v1
title: Identification of the serum metabolites associated with cow milk consumption in Chinese Peri-/Postmenopausal women

description: Cow milk consumption (CMC) and downstream alterations of serum metabolites are commonly considered important factors regulating human health status. Foods may lead to metabolic changes directly or indirectly through remodelling gut microbiota (GM). We sought to identify the metabolic alterations in Chinese Peri-/Postmenopausal women with habitual CMC and explore if the GM mediates the CMC-metabolite associations. 346 Chinese Peri-/Postmenopausal women participants were recruited in this study. Fixed effects regression and partial least squares discriminant analysis (PLS-DA) were applied to reveal alterations of serum metabolic features in different CMC groups. Spearman correlation coefficient was computed to detect metabolome-metagenome association. 36 CMC-associated metabolites including palmitic acid (FA(16:0)), 7alpha-hydroxy-4-cholesterin-3-one (7alphaC4), citrulline were identified by both fixed effects regression (FDR &lt; 0.05) and PLS-DA (VIP score &gt; 2). Some significant metabolite-GM associations were observed, including FA(16:0) with gut species Bacteroides ovatus, Bacteroides sp.D2. These findings would further prompt our understanding of the effect of cow milk on human health.
DOI: 10.15468/dl.bc7ak2
title: Occurrence Download

description: A dataset containing 6120965 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "Year 2019-2024"
 ]
}

 The dataset includes 6120965 records from 223 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075335-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25903/m6z4-en20
title: Indopacific coastal fish-habitat video data for understanding ecological value and spatial relationships

description: <p>Data was collected as described in:  Bradley, M., Baker, R., Nagelkerken, I., & Sheaves, M. (2019). Context is more important than habitat type in determining use by juvenile fish. Landscape Ecology, 34(2), 427&ndash;442. doi:<a href="https://doi.org/10.1007/s10980-019-00781-3">10.1007/s10980-019-00781-3</a></p>
<p>Video were collected from a range of locations throughout the Indo-Pacific, including: Australia (Queensland, Northern Territory, Western Australia), Papua New Guinea (New Britain), French Polynesia (Tahiti). Videos are point census surveys of fish assemblages, and are either unbaited or baited. This provided a point census of fish taxa present, as well as an indication of local biological and structural habitat characteristics. Surveys were conducted during daylight hours and periods of relatively low turbidity to ensure conditions appropriate for video sampling. Accordingly, sampling occurred between June and December, outside the Austral monsoon. Sampling was carried out during the full breadth of variation in tidal inundation in a region both in terms of the tidal cycle (high-low) and tidal periods (springs and neaps). Independence of video samples was maintained by leaving more than 20 m between deployments, with cameras usually spaced 50&ndash;100 m apart. Efforts were made to sample the entire breadth of habitat variation present in the region. Initially, the study areas were sampled randomly, with cameras placed at random intervals from the shore, to achieve broad spatial replication. After reviewing the metadata, targeted sampling was performed to boost replication in substrate/biota combinations with low representation, though for some rare combinations of biota and substrate, this could not be achieved. </p>
DOI: 10.4225/28/588e9d7db86da
title: Proteomic analysis of allergenic proteins in King crab (Paralithodes camtschaticus) and Edible crab (Cancer pagurus)
DOI: 10.25903/5d4d00bb0d310
title: In vivo percutaneous absorption data for model chemicals in Rhinella marina: chemicals formulated in Amphibian Ringer’s Solution

description: <p>In vivo percutaneous absorption kinetics of caffeine, benzoic acid, and ibuprofen in the terrestrial toad Rhinella marina.</p>
DOI: 10.25903/5dha-xt16
title: Draft Genome Sequence (Prawn Industrial Transformation Research Hub)

description: <p>Data related to the construction of a genome and transcriptome for the black tiger prawn, <em>Penaeus monodon</em>.</p>
DOI: 10.25903/5eb4ec2e97772
title: Gamete concentrations and gonad index for Pacific crown-of-thorns starfish

description: <p>Data presented on gamete concentrations (number of oocytes or sperm released per gram of gonad materrial, following induced spawning on samples of gonads) for Pacific crown-of-thorns starfish collectedd on the Great Barrier Reef during the population irruption that started in ~2010. Also presented are total mass of gonads and corresponding total body mass of larger set of starfish, to facilitate estimated of reproductive investment or gonad index (GI)</p><p>Dataset consists of 3 spreadsheets (saved in both MS Excel (.xlsx) and Open Document (.ods) formats):</p><ul><li>GI COTS GBR 2014-19 - Gonad index (total mass of gonads/ total body mass) for Pacific crown-of-thorns starfish</li><li>Oocyte conc COTS GBR 2015 - Ocyte concentrations measured from samples taken from 3 different arms for each of 32 females, collected at Lizard Island</li><li>Sperm conc COTS GBR 2015 - Sperm concentrations measured from samples taken from 3 different arms for each of 11 males, collected at Lizard Island</li></ul><p> </p>
DOI: 10.25903/5cb82a4be5c31
title: Dataset for: Fakan, E. P. & McCormick, M. I. Boat noise affects the early life history of two damselfishes. Marine Pollution Bulletin

description: <p>Anthropogenic noise can have a negative effect on the physiology and survival of marine fishes. Most research has focused on later life-stages, and few studies have investigated the effects of human-induced noise on embryogenesis. The current study investigated whether playback of motorboat noise affected the embryogenesis of the coral reef damselfishes, Amphiprion melanopus and Acanthochromis polyacanthus. Embryos reared under the playback of boat noise had faster heart rates compared to the ambient reef controls. The effects of noise on morphological development differed between species and the fundamental interrelationships between early life history characters changed dramatically under boat noise for Ac. polyacanthus. Noise treatments did not alter the survival rates of embryos under laboratory conditions. Although species specific, our findings suggest that anthropogenic noise causes physiological responses in fishes during embryogenesis and these changes have direct impacts on their development and these alterations may have carry-over effects to later life stages.</p><p>The dataset consists of 6 worksheets:</p><p> </p><ul><li>Power Spectral Density</li><li>Embrygo Heart Rate</li><li>Embryo Yolk Volume</li><li>Larval Morphology</li><li>Embryo-Larval Correlations</li><li>Embryo Survival</li></ul><p>The full methodology is available in the publication shown in the Related Publications link below.</p>
DOI: 10.25903/5d5f31376caa4
title: Dataset describing detection or RRV and WNV in mosquito excreta

description: <p>Mosquito excreta was collected from mosquitoes infected with arboviruses and tested for the presence of viral RNA by RT-rtPCR.</p>
DOI: 10.25903/am5k-kq44
title: Data: Detection of novel viruses in Australian freshwater turtles 

description: The data generated for my PhD thesis chapter include morphometric information, as well as viral DNA/RNA sequences obtained by Sanger sequencing and next generation sequencing technologies. These data were mainly collected for the molecular detection and characterization of potentially pathogenic viruses in Australian freshwater turtles. All the novel viral sequences detected in this study have been submitted to GenBank.
DOI: 10.4225/28/5744db5d11809
title: Tree-scale lateral variation in root mass, throughfall and soil respiration in mature oil palm plantations in Papua New Guinea
DOI: 10.4225/28/5976dd643fff8
title: Captive movement rates of the Pacific crown-of-thorns starfish, Acanthaster solaris
DOI: 10.4225/28/5ab434947eba3
title: Walker St Sensor Project - deployment data
DOI: 10.25903/5f23bd0447ed8
title: Dataset for: The effect of sound lure frequency and habitat type on male Aedes albopictus (Diptera: Culicidae) capture rates with the Male Aedes Sound Trap

description: <p>This data describes a series of experiments using the Male <em>Aedes</em> Sound Trap to capture male <em>Ae. albopictus </em>mosquitoes on Masig (Yorke) Island, Torres Strait, Queensland, Australia. This work was conducted between 22/03/2019 – 8/4/2019 and 11/03/2020 – 25/03/2020.</p><p>The data from the three experiments is archived into one database. Each experiment is organised into a different tab on the MS Excel (.xlsx) spreadsheet: Experiments 1 ("freq_01"), 2 ("freq_02") and 3 ("habitat_01").</p><p> </p>
DOI: 10.25903/5c2d5b9de37a4
title: Streetfighter controlled trials - Cyclists 

description: <p>Live traffic test of the Streetfighter prototype traffic detection system using controlled traffic.<br /><br />This dataset involves controlled passes of cyclist traffic with a sensor platform located six metres above the road surface.<br /><br />Included in the platform were the following sensors:<br />- 2 HC-SR501 Wide angle PIR motion detectors<em><br />- 1 </em>Panasonic AMN33111J Narrow angle PIR motion detector<br />- 1 * LidarLite v1 lidar<br /><br />Tests were conducted with single or multiple cyclists at speeds ranging from 15-40 km/h, in both directions of travel, and in the lane directly beneath the sensor platform and opposite the sensor platform.</p>
<p>This dataset consists of the following folders/files:</p>
<ul>
<li>Cyclist Test Results: 1 data file in OpenDocument (.ods) format (61 KB) - analysis of collected results</li>
<li>Cyclist Events - Direct.zip: contains 306 compressed image files in JPEG (.jpg) format (7.2 MB) - video detections counted by computer vision in the direct lane</li>
<li>Cyclist Events - Opposite lane.zip: contains 107 compressed image file in JPEG (.jpg) format (2.4 MB) - video detections counted by computer vision in the opposite lane</li>
<li>Data.zip: contains 13 files in comma-separated values (.csv) format and a metadata file in markdown (.md) format (9 KB) - data collected from each sensor over the course of testing. The markdown file (sensor data metadata) is also saved in PDF format and attached.</li>
</ul>
<p>The linked version includes the files listed above as well as:</p>
<ul>
<li>Video folder: contains 2 MOV (.mov) video files (1.6 GB)</li>
</ul>
DOI: 10.25903/518b-hb05
title: Freshwater fishes and crustaceans of the Northern Range, Trinidad

description: This is a record of my detailed survey of the freshwater fishes and crustaceans of the streams flowing in the Northern Range mountains of northern Trinidad, West Indies.  This is apparently the only extensive survey of these streams and will be valuable to people (like me) who work on guppy ecology, evolution, behaviour and genetics.  I have had so many requests for this data that I have decided to make it publicly available.  Since a very large fraction of those localities have been extensively disturbed and species lost this would also be valuable for newer surveys of stream biodiversity.


Software/equipment used to create/collect the data: An explanation of the methods used to collect this data is included in the attached PDF file.
DOI: 10.4225/28/59e5588c907c7
title: Effects of suspended sediments on the predator escape performance and antipredator behaviour of a coral reef fish
DOI: 10.15468/dl.5qfsr4
title: Occurrence Download

description: A dataset containing 359 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.151891 -36.838373, 144.151891 -36.842865, 144.156383 -36.842865, 144.156383 -36.838373, 144.151891 -36.838373))"
 ]
}

 The dataset includes 359 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075342-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25903/pmz0-p693
title: NE Australia dugong distribution and relative density groups

description: Spatially-explicit models of dugong density and distribution were developed using data from marine megafauna aerial surveys conducted in NE Australia. The method followed Grech and Marsh (2007) and Grech et al. (2011) with improvements as per Sobtzick et al. (2017).

Input data: Dugong counts corrected for perception and depth-specific availability probabilities as per the Hagihara method, except in Torres Strait.

Model: The data were modelled using the geostatistical interpolation method Empirical Bayesian Kriging (EBK) in ArcGIS 10.7. The semivariogram type was linear and the smoothed search neighbourhood was set to a radius of 5000m. Relative densities were calculated at a grid size of 1 km2. 

Dugong densities per grid cell were classified as Low (0 dugongs per km2); Medium (0-0.5 dugongs per km2); High (0.5-1 dugongs per km2), and Very high (>1 dugongs per km2). Grid cells with 0 dugongs per km2 were included: (1) to ensure that the spatial layers of dugong density extended across the entire survey area; (2) because dugongs are likely to move across grids where they were not detected during the surveys, and (3) because we have not attempted to estimate abundance for areas where dugongs were not sighted.

The value of grid cells in the data are: 1 = Low; 2 = Medium; 3 = High; 4 = Very high.
DOI: 10.4225/28/59c446100467b
title: Adenosine, Lidocaine and Mg2+ (ALM) fluid therapy for treatment of non-compressible uncontrolled haemorrhage
DOI: 10.25903/5ea65b0680476
title: Planned routes of Pan-Borneo Highway and related roads according to Sabah Structure Plan 2033

description: <p>GIS data of planned roads for Sabah, digitised Sabah Structural Plan of 2033.</p>
DOI: 10.25903/5f1787ea11e4b
title: Enhanced germination of seagrass seeds by marine mega-herbivores

description: <p>Dataset for seagrass (<em>Zostera muelleri</em>) seed germination results of seeds passed through the gut of marine mega-herbivores (dugong or green sea turtle) compared with seeds dropped from the plant.  Germination results are based on a 60 day experiment with three temperature treatments; low (19C), medium (26C) and high (32C).</p>
DOI: 10.4225/28/5b344db8591a2
title: Data for PhD thesis Chapter 5: Cleaner shrimp remove parasite eggs on fish cages
DOI: 10.25903/enfr-pt65
title: Beneficial effects of diel CO2 cycles on reef fish metabolic performance are diminished under elevated temperature

description: <p>This data set contains data collected by Taryn Laubenstein of James Cook University in 2017 dealing with the effects of stable and diel-cycling elevated CO<sub>2</sub>, as well as elevated temperature, on the behavioral and physiological performance of juvenile spiny damselfish, Acanthochromis polyacanthus.</p>
DOI: 10.4225/28/571eb75a4de5f
title: Multi-species grouper spawning aggregation fishery study in Papua New Guinea