cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26991712
title: Additional file 9 of GRAS gene family in rye (Secale cereale L.): genome-wide identification, phylogeny, evolutionary expansion and expression analyses

description: Supplementary Material 9: Table S9. One-to-one orthologous relationships between Secale cereale and Arabidopsis thaliana
DOI: 10.6084/m9.figshare.26991709
title: Additional file 8 of GRAS gene family in rye (Secale cereale L.): genome-wide identification, phylogeny, evolutionary expansion and expression analyses

description: Supplementary Material 8: Table S8. The three pairs of segmental duplicates in S. cereale GRAS genes
DOI: 10.6084/m9.figshare.26991709.v1
title: Additional file 8 of GRAS gene family in rye (Secale cereale L.): genome-wide identification, phylogeny, evolutionary expansion and expression analyses

description: Supplementary Material 8: Table S8. The three pairs of segmental duplicates in S. cereale GRAS genes
DOI: 10.6084/m9.figshare.26991712.v1
title: Additional file 9 of GRAS gene family in rye (Secale cereale L.): genome-wide identification, phylogeny, evolutionary expansion and expression analyses

description: Supplementary Material 9: Table S9. One-to-one orthologous relationships between Secale cereale and Arabidopsis thaliana
DOI: 10.6084/m9.figshare.26991727
title: Additional file 14 of GRAS gene family in rye (Secale cereale L.): genome-wide identification, phylogeny, evolutionary expansion and expression analyses

description: Supplementary Material 14: Table S14. One-to-one orthologous relationships between Lo7 and Weining
DOI: 10.6084/m9.figshare.26991703
title: Additional file 6 of GRAS gene family in rye (Secale cereale L.): genome-wide identification, phylogeny, evolutionary expansion and expression analyses

description: Supplementary Material 6: Table S6. The tandem duplication events of ScGRAS genes in Weining
DOI: 10.6084/m9.figshare.26991703.v1
title: Additional file 6 of GRAS gene family in rye (Secale cereale L.): genome-wide identification, phylogeny, evolutionary expansion and expression analyses

description: Supplementary Material 6: Table S6. The tandem duplication events of ScGRAS genes in Weining
DOI: 10.6084/m9.figshare.26991721.v1
title: Additional file 12 of GRAS gene family in rye (Secale cereale L.): genome-wide identification, phylogeny, evolutionary expansion and expression analyses

description: Supplementary Material 12: Table S12. The relative expression levels of GRAS genes were detected at different stages of grain development under gibberellin treatment
DOI: 10.6084/m9.figshare.26991757
title: Additional file 5 of Upper limb intention tremor assessment: opportunities and challenges in wearable technology

description: Additional file 5. Database search strings. This text document contains the search strings used in PubMed and Scopus for data retrieval.
DOI: 10.6084/m9.figshare.26991757.v1
title: Additional file 5 of Upper limb intention tremor assessment: opportunities and challenges in wearable technology

description: Additional file 5. Database search strings. This text document contains the search strings used in PubMed and Scopus for data retrieval.
DOI: 10.6084/m9.figshare.26991760.v1
title: Additional file 1 of Resistance to biotic and abiotic stress in potato: the origin of the genes and corresponding molecular markers

description: Additional file 1. Table S1: Markers linked to biotic stress resistance genes in potato.
DOI: 10.6084/m9.figshare.26991754
title: Additional file 4 of Upper limb intention tremor assessment: opportunities and challenges in wearable technology

description: Additional file 4. Database of selected studies. This table shows the database of the selected studies. It provides additional information than Additional file 1, such as the type of IMU sensors, and disseminates the data to automatically analyze it.
DOI: 10.6084/m9.figshare.26991760
title: Additional file 1 of Resistance to biotic and abiotic stress in potato: the origin of the genes and corresponding molecular markers

description: Additional file 1. Table S1: Markers linked to biotic stress resistance genes in potato.
DOI: 10.6084/m9.figshare.26991754.v1
title: Additional file 4 of Upper limb intention tremor assessment: opportunities and challenges in wearable technology

description: Additional file 4. Database of selected studies. This table shows the database of the selected studies. It provides additional information than Additional file 1, such as the type of IMU sensors, and disseminates the data to automatically analyze it.
DOI: 10.6084/m9.figshare.26990791
title: <b><i>Effect of antioxidant therapy on neurotrophic factor expression and inflammation six weeks after thoracic spinal cord injury</i></b>

description: Intraspinal as well as intramuscular administrations of brain- or glial cell line-derived neurotrophic factors (BDNF, GDNF) have been shown to protect neural tissue and promote functional recovery after traumatic spinal cord injury (SCI). In contrast to these local invasive therapies, systemic approaches did not show similar effects. Interestingly, a diet rich in antioxidants may stimulate the endogenous production of neurotrophic factors (NFs). Therefore, our study investigated how carnosine, a natural antioxidant commonly used as a supplement by many athletes, affects functional recovery, NF production, and cellular responses six weeks after SCI.
DOI: 10.6084/m9.figshare.26990791.v1
title: <b><i>Effect of antioxidant therapy on neurotrophic factor expression and inflammation six weeks after thoracic spinal cord injury</i></b>

description: Intraspinal as well as intramuscular administrations of brain- or glial cell line-derived neurotrophic factors (BDNF, GDNF) have been shown to protect neural tissue and promote functional recovery after traumatic spinal cord injury (SCI). In contrast to these local invasive therapies, systemic approaches did not show similar effects. Interestingly, a diet rich in antioxidants may stimulate the endogenous production of neurotrophic factors (NFs). Therefore, our study investigated how carnosine, a natural antioxidant commonly used as a supplement by many athletes, affects functional recovery, NF production, and cellular responses six weeks after SCI.
DOI: 10.6084/m9.figshare.26991775
title: Additional file 4 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 4: Table S1. Classification of the studied traits.
DOI: 10.6084/m9.figshare.26991775.v1
title: Additional file 4 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 4: Table S1. Classification of the studied traits.
DOI: 10.6084/m9.figshare.26991778
title: Additional file 5 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 5: Table S2. The high-density consensus genetic map comprises 6970 markers.
DOI: 10.6084/m9.figshare.26991778.v1
title: Additional file 5 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 5: Table S2. The high-density consensus genetic map comprises 6970 markers.
DOI: 10.6084/m9.figshare.26991781
title: Additional file 6 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 6: Table S3. The genes located in the detected MQTLs regions for each distinct trait.
DOI: 10.6084/m9.figshare.26991781.v1
title: Additional file 6 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 6: Table S3. The genes located in the detected MQTLs regions for each distinct trait.
DOI: 10.6084/m9.figshare.26991784
title: Additional file 7 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 7: Supplementary Table S4. The genes located in the detected MQTLs regions through inclusive MQTL analysis.
DOI: 10.6084/m9.figshare.26991784.v1
title: Additional file 7 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 7: Supplementary Table S4. The genes located in the detected MQTLs regions through inclusive MQTL analysis.
DOI: 10.6084/m9.figshare.26991805.v1
title: Additional file 14 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 14: Supplementary Table S11. The common genes between the drought responsive genes (based on the RNA-seq and microarray experiments) and the genes located in the areas of the 213 identified MQTLs for distinct traits and the genes placed inside the locations of those MQTLs with CI &lt; 1 cM together with their expression levels.
DOI: 10.6084/m9.figshare.26991808
title: Additional file 15 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 15: Supplementary Table S12. The common genes among the DEGs (based on RNA-seq and microarray experiments), the genes located in significant SNPs based on GWAS studies, the genes placed within the areas of the 213 identified MQTLs for the distinct traits, and the genes placed inside the locations of those MQTLs with CI &lt; 1 cM together with their expression levels.
DOI: 10.6084/m9.figshare.26991808.v1
title: Additional file 15 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 15: Supplementary Table S12. The common genes among the DEGs (based on RNA-seq and microarray experiments), the genes located in significant SNPs based on GWAS studies, the genes placed within the areas of the 213 identified MQTLs for the distinct traits, and the genes placed inside the locations of those MQTLs with CI &lt; 1 cM together with their expression levels.
DOI: 10.6084/m9.figshare.26991811
title: Additional file 16 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 16: Supplementary Table S13. Common genes among the DEGs (based on the related RNA-seq and microarray experiments), the genes located in the MQTL regions detected by inclusive MQTL analysis (96 MQTL), the genes placed within the MQTL areas identified for the distinct traits (213 MQTLs) and the genes located in significant SNPs based on GWAS studies.
DOI: 10.6084/m9.figshare.26991811.v1
title: Additional file 16 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 16: Supplementary Table S13. Common genes among the DEGs (based on the related RNA-seq and microarray experiments), the genes located in the MQTL regions detected by inclusive MQTL analysis (96 MQTL), the genes placed within the MQTL areas identified for the distinct traits (213 MQTLs) and the genes located in significant SNPs based on GWAS studies.
DOI: 10.6084/m9.figshare.26991790
title: Additional file 9 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 9: Supplementary Table S6. Drought responsive genes located in the identified MQTL regions.
DOI: 10.6084/m9.figshare.26991790.v1
title: Additional file 9 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 9: Supplementary Table S6. Drought responsive genes located in the identified MQTL regions.
DOI: 10.6084/m9.figshare.26991793
title: Additional file 10 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 10: Supplementary Table S7. The MQTLs overlapped with the significant SNPs in reported rice GWAS studies for yield and DT-associated traits under drought stress conditions in rice.
DOI: 10.6084/m9.figshare.26991796
title: Additional file 11 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 11: Supplementary Table S8. The collected QTL data for performing meta-analysis of QTLs in the current research.
DOI: 10.6084/m9.figshare.26991796.v1
title: Additional file 11 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 11: Supplementary Table S8. The collected QTL data for performing meta-analysis of QTLs in the current research.
DOI: 10.6084/m9.figshare.26991799.v1
title: Additional file 12 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 12: Supplementary Table S9. The identified MQTLs that were associated with more than one trait.
DOI: 10.6084/m9.figshare.26991793.v1
title: Additional file 10 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 10: Supplementary Table S7. The MQTLs overlapped with the significant SNPs in reported rice GWAS studies for yield and DT-associated traits under drought stress conditions in rice.
DOI: 10.6084/m9.figshare.26991799
title: Additional file 12 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 12: Supplementary Table S9. The identified MQTLs that were associated with more than one trait.
DOI: 10.6084/m9.figshare.26991802
title: Additional file 13 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 13: Supplementary Table S10. The drought responsive genes identified in rice based on the related RNA-seq and microarray experiments (Supplemental Table 5).
DOI: 10.6084/m9.figshare.26991802.v1
title: Additional file 13 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 13: Supplementary Table S10. The drought responsive genes identified in rice based on the related RNA-seq and microarray experiments (Supplemental Table 5).
DOI: 10.6084/m9.figshare.26991805
title: Additional file 14 of Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach

description: Additional file 14: Supplementary Table S11. The common genes between the drought responsive genes (based on the RNA-seq and microarray experiments) and the genes located in the areas of the 213 identified MQTLs for distinct traits and the genes placed inside the locations of those MQTLs with CI &lt; 1 cM together with their expression levels.
DOI: 10.5281/zenodo.13748251
title: Testing dataset for plasmoid finder script utilized in J.T. Vos, H. Olivares, B. Cerutti, and M. Moscibrodzka, MNRAS 531, 1554 (2024), arXiv:2309.03267 [astro- ph.HE].

description: The files shared here are used for a test case that is posted on Github. Contact the author for access. Here, I share GRMHD input data that is to be placed in a folder named "test_data" for the initial starting test.
DOI: 10.5281/zenodo.13748252
title: Testing dataset for plasmoid finder script utilized in J.T. Vos, H. Olivares, B. Cerutti, and M. Moscibrodzka, MNRAS 531, 1554 (2024), arXiv:2309.03267 [astro- ph.HE].

description: The files shared here are used for a test case that is posted on Github. Contact the author for access. Here, I share GRMHD input data that is to be placed in a folder named "test_data" for the initial starting test.
DOI: 10.6084/m9.figshare.26991823
title: Additional file 3 of Standardized Pre-clinical Surgical Animal Model Protocol to Investigate the Cellular and Molecular Mechanisms of Ischemic Flap Healing

description: Additional file 3. Examples of statistical flap data analysis and visualization.
DOI: 10.6084/m9.figshare.26991823.v1
title: Additional file 3 of Standardized Pre-clinical Surgical Animal Model Protocol to Investigate the Cellular and Molecular Mechanisms of Ischemic Flap Healing

description: Additional file 3. Examples of statistical flap data analysis and visualization.
DOI: 10.6084/m9.figshare.26991838
title: Additional file 3 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 3: Table S1. Genome summary statistics for various mollusk genomes available in NCBI and both versions of MolluscDB.
DOI: 10.6084/m9.figshare.26991838.v1
title: Additional file 3 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 3: Table S1. Genome summary statistics for various mollusk genomes available in NCBI and both versions of MolluscDB.
DOI: 10.6084/m9.figshare.26991841
title: Additional file 4 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 4: Table S2. RepeatModeler analysis for the Berghia stephanieae genome.
DOI: 10.6084/m9.figshare.26991841.v1
title: Additional file 4 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 4: Table S2. RepeatModeler analysis for the Berghia stephanieae genome.
DOI: 10.6084/m9.figshare.26991844
title: Additional file 5 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 5: Table S3. OrthoFinder cluster analysis statistics for each proteome.
DOI: 10.6084/m9.figshare.26991844.v1
title: Additional file 5 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 5: Table S3. OrthoFinder cluster analysis statistics for each proteome.
DOI: 10.6084/m9.figshare.26991847
title: Additional file 6 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 6: Table S4. Read statistics for short read transcriptome samples for Berghia stephanieae.
DOI: 10.6084/m9.figshare.26991847.v1
title: Additional file 6 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 6: Table S4. Read statistics for short read transcriptome samples for Berghia stephanieae.
DOI: 10.6084/m9.figshare.26991850
title: Additional file 7 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 7: Table S5. Number of genes upregulated in each tissue, categorized by assigned clade-specificity of each gene. Table S6. Percentage of genes upregulated in each tissue, categorized by assigned clade-specificity of each gene.
DOI: 10.6084/m9.figshare.26991850.v1
title: Additional file 7 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 7: Table S5. Number of genes upregulated in each tissue, categorized by assigned clade-specificity of each gene. Table S6. Percentage of genes upregulated in each tissue, categorized by assigned clade-specificity of each gene.
DOI: 10.6084/m9.figshare.26991853
title: Additional file 8 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 8: Table S7. Number of genes uniquely upregulated in each tissue, categorized by assigned clade-specificity of each gene. Table S8. Percentage of genes uniquely upregulated in each tissue, categorized by assigned clade-specificity of each gene.
DOI: 10.6084/m9.figshare.26991853.v1
title: Additional file 8 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 8: Table S7. Number of genes uniquely upregulated in each tissue, categorized by assigned clade-specificity of each gene. Table S8. Percentage of genes uniquely upregulated in each tissue, categorized by assigned clade-specificity of each gene.
DOI: 10.6084/m9.figshare.26991856
title: Additional file 9 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 9: Table S9. Number and proportion of upregulated genes in each tissue that were classified as annotated, unannotated, or uncharacterized.(XLSX 6 KB)
DOI: 10.6084/m9.figshare.26991856.v1
title: Additional file 9 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 9: Table S9. Number and proportion of upregulated genes in each tissue that were classified as annotated, unannotated, or uncharacterized.(XLSX 6 KB)
DOI: 10.6084/m9.figshare.26991859
title: Additional file 10 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 10: Table S10. GO term enrichment results for genes upregulated in the brain. Table S11. GO term enrichment results for genes upregulated in the rhinophores. Table S12. GO term enrichment results for genes upregulated in the oral tentacles. Table S13. GO term enrichment results for genes upregulated in the distal ceras. Table S14. GO term enrichment results for genes upregulated in the proximal ceras. Table S15. GO term enrichment results for genes upregulated in the foot. Table S16. GO term enrichment results for genes upregulated in the tail.
DOI: 10.6084/m9.figshare.26991859.v1
title: Additional file 10 of A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

description: Additional file 10: Table S10. GO term enrichment results for genes upregulated in the brain. Table S11. GO term enrichment results for genes upregulated in the rhinophores. Table S12. GO term enrichment results for genes upregulated in the oral tentacles. Table S13. GO term enrichment results for genes upregulated in the distal ceras. Table S14. GO term enrichment results for genes upregulated in the proximal ceras. Table S15. GO term enrichment results for genes upregulated in the foot. Table S16. GO term enrichment results for genes upregulated in the tail.