cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6144353.v2
title: Platanthera praeclara phenology data

description: These data are associated with the manuscript " Using phenological monitoring <i>in situ</i> and historical records to determine environmental triggers for emergence and anthesis in the rare orchid <i>Platanthera praeclara</i> Sheviak & Bowles"
DOI: 10.6084/m9.figshare.6144353.v4
title: Platanthera praeclara phenology data

description: These data are associated with the manuscript " Using phenological monitoring <i>in situ</i> and historical records to determine environmental triggers for emergence and anthesis in the rare orchid <i>Platanthera praeclara</i> Sheviak & Bowles"
DOI: 10.6084/m9.figshare.6144353.v3
title: Platanthera praeclara phenology data

description: These data are associated with the manuscript " Using phenological monitoring <i>in situ</i> and historical records to determine environmental triggers for emergence and anthesis in the rare orchid <i>Platanthera praeclara</i> Sheviak & Bowles"
DOI: 10.6084/m9.figshare.6144314
title: Supporting Data from Neuronal and non-neuronal signals regulate <i>Caernorhabditis elegans</i> avoidance of contaminated food

description: Data files for data presented in this paper
DOI: 10.6084/m9.figshare.6144314.v1
title: Supporting Data from Neuronal and non-neuronal signals regulate <i>Caernorhabditis elegans</i> avoidance of contaminated food

description: Data files for data presented in this paper
DOI: 10.6084/m9.figshare.6144299
title: Raw data tables from Feeding decisions under contamination risk in bonobos

description: data for analyses exp. 1-5
DOI: 10.6084/m9.figshare.6144299.v1
title: Raw data tables from Feeding decisions under contamination risk in bonobos

description: data for analyses exp. 1-5
DOI: 10.6084/m9.figshare.6144284
title: Fourier coefficients from Morphometric assessment of pterosaur jaw disparity

description: Fourier coefficients for all 46 taxa
DOI: 10.6084/m9.figshare.6144281
title: Electronic Supplementary Information from Morphometric assessment of pterosaur jaw disparity

description: Additional data and tables
DOI: 10.6084/m9.figshare.6144281.v1
title: Electronic Supplementary Information from Morphometric assessment of pterosaur jaw disparity

description: Additional data and tables
DOI: 10.6084/m9.figshare.6144278
title: Procrustes aligned landmarks coordinates from Morphometric assessment of pterosaur jaw disparity

description: Procrustes aligned landmarks coordinates for all 46 taxa
DOI: 10.6084/m9.figshare.6144122
title: TCGA PanCanAtlas Copy Number Data

description: Publicly available copy number datasets from TCGA PanCanAtlas. <br>These data are used by Way et al. 2018 Cell Reports <br>1. PanCan GISTIC copy number threshold calls (gene level)2. Percent of genome altered by copy number alterations
DOI: 10.6084/m9.figshare.6144059
title: Real-time intracochlear imaging of automated cochlear implant insertions in whole decalcified cadaver cochleas using ultrasound

description: <b>Objectives</b>: This study aimed to determine the feasibility of combining high-frequency ultrasound imaging, automated insertion, and force sensing to yield more information about cochlear implant insertion dynamics. <b>Methods</b>: An apparatus was developed combining these aspects along with software to control implant and imaging probe positions. Decalcified unfixed human cochleas were implanted at various speeds, insertion sites, and implant models while imaging near the implant tip throughout insertion and recording force data from the cochlea mounting stage. Ultrasound video data were also captured. <b>Results</b>: The basilar membrane (BM) was frequently penetrated by the implant in either the mid-basal or lower middle turn. Measurements were also performed of apical BM motion in response to upstream implant movement at varying insertion speeds. Increasing insertion speed resulted in greater BM displacement. <b>Discussion</b>: Multiple insertions per cochlea increase the volume of data per specimen while also reducing variability due to differences between cochleas. However, to image inside the cochlea with ultrasound, the bone had to be decalcified, which likely had a significant effect upon the response of tissue to contact by the implant. As calcified bone strongly reflects ultrasound, we also found ultrasound imaging to be an excellent method for easily assessing bone decalcification progress. <b>Conclusion</b>: This technique may be very useful for some studies, although the confounding effects of bone decalcification may make results of other studies too difficult to generalize. The approach could be adapted to other real-time imaging modalities, such as optical coherence tomography.
DOI: 10.6084/m9.figshare.6144059.v1
title: Real-time intracochlear imaging of automated cochlear implant insertions in whole decalcified cadaver cochleas using ultrasound

description: <b>Objectives</b>: This study aimed to determine the feasibility of combining high-frequency ultrasound imaging, automated insertion, and force sensing to yield more information about cochlear implant insertion dynamics. <b>Methods</b>: An apparatus was developed combining these aspects along with software to control implant and imaging probe positions. Decalcified unfixed human cochleas were implanted at various speeds, insertion sites, and implant models while imaging near the implant tip throughout insertion and recording force data from the cochlea mounting stage. Ultrasound video data were also captured. <b>Results</b>: The basilar membrane (BM) was frequently penetrated by the implant in either the mid-basal or lower middle turn. Measurements were also performed of apical BM motion in response to upstream implant movement at varying insertion speeds. Increasing insertion speed resulted in greater BM displacement. <b>Discussion</b>: Multiple insertions per cochlea increase the volume of data per specimen while also reducing variability due to differences between cochleas. However, to image inside the cochlea with ultrasound, the bone had to be decalcified, which likely had a significant effect upon the response of tissue to contact by the implant. As calcified bone strongly reflects ultrasound, we also found ultrasound imaging to be an excellent method for easily assessing bone decalcification progress. <b>Conclusion</b>: This technique may be very useful for some studies, although the confounding effects of bone decalcification may make results of other studies too difficult to generalize. The approach could be adapted to other real-time imaging modalities, such as optical coherence tomography.
DOI: 10.6084/m9.figshare.6143945
title: Raw data - Ecotoxicological tests with Osmia bicornis and 16 insecticides

description: Raw data from acute contact toxicity tests with the red mason bee <i>Osmia bicornis</i> and 16 insecticides.<br>
DOI: 10.6084/m9.figshare.6143945.v1
title: Raw data - Ecotox tests with 16 insecticides

description: Raw data from acute contact toxicity tests with the red mason bee <i>Osmia bicornis</i> and 16 insecticides.<br>
DOI: 10.6084/m9.figshare.6143945.v2
title: Raw data - Ecotoxicologal tests with 16 insecticides

description: Raw data from acute contact toxicity tests with the red mason bee <i>Osmia bicornis</i> and 16 insecticides.<br>
DOI: 10.6084/m9.figshare.6143945.v3
title: Raw data - Ecotoxicologal tests with Osmia bicornis and 16 insecticides

description: Raw data from acute contact toxicity tests with the red mason bee <i>Osmia bicornis</i> and 16 insecticides.<br>
DOI: 10.6084/m9.figshare.6143945.v4
title: Raw data - Ecotoxicologal tests with Osmia bicornis and 16 insecticides

description: Raw data from acute contact toxicity tests with the red mason bee <i>Osmia bicornis</i> and 16 insecticides.<br>
DOI: 10.6084/m9.figshare.6143945.v5
title: Raw data - Ecotoxicologal tests with Osmia bicornis and 16 insecticides

description: Raw data from acute contact toxicity tests with the red mason bee <i>Osmia bicornis</i> and 16 insecticides.<br>
DOI: 10.6084/m9.figshare.6143945.v6
title: Raw data - Ecotoxicologal tests with Osmia bicornis and 16 insecticides

description: Raw data from acute contact toxicity tests with the red mason bee <i>Osmia bicornis</i> and 16 insecticides.<br>
DOI: 10.6084/m9.figshare.6143945.v7
title: Raw data - Ecotoxicologal tests with Osmia bicornis and 16 insecticides

description: Raw data from acute contact toxicity tests with the red mason bee <i>Osmia bicornis</i> and 16 insecticides.<br>
DOI: 10.6084/m9.figshare.6143945.v8
title: Raw data - Ecotoxicologal tests with Osmia bicornis and 16 insecticides

description: Raw data from acute contact toxicity tests with the red mason bee <i>Osmia bicornis</i> and 16 insecticides.<br>
DOI: 10.6084/m9.figshare.6143855
title: Live-cell imaging reveals the dynamics and function of single-telomere TERRA molecules in cancer cells

description: Telomeres cap the ends of eukaryotic chromosomes, protecting them from degradation and erroneous recombination events which may lead to genome instability. Telomeres are transcribed giving rise to telomeric repeat-containing RNAs, called TERRA. The TERRA long noncoding RNAs have been proposed to play important roles in telomere biology, including heterochromatin formation and telomere length homeostasis. While TERRA RNAs are predominantly nuclear and localize at telomeres, little is known about the dynamics and function of TERRA molecules expressed from individual telomeres. Herein, we developed an assay to image endogenous TERRA molecules expressed from a single telomere in living human cancer cells. We show that single-telomere TERRA can be detected as TERRA RNA single particles which freely diffuse within the nucleus. Furthermore, TERRA molecules aggregate forming TERRA clusters. Three-dimensional size distribution and single particle tracking analyses revealed distinct sizes and dynamics for TERRA RNA single particles and clusters. Simultaneous time lapse confocal imaging of TERRA particles and telomeres showed that TERRA clusters transiently co-localize with telomeres. Finally, we used chemically modified antisense oligonucleotides to deplete TERRA molecules expressed from a single telomere. Single-telomere TERRA depletion resulted in increased DNA damage at telomeres and elsewhere in the genome. These results suggest that single-telomere TERRA transcripts participate in the maintenance of genomic integrity in human cancer cells.
DOI: 10.6084/m9.figshare.6143855.v2
title: Live-cell imaging reveals the dynamics and function of single-telomere TERRA molecules in cancer cells

description: Telomeres cap the ends of eukaryotic chromosomes, protecting them from degradation and erroneous recombination events which may lead to genome instability. Telomeres are transcribed giving rise to telomeric repeat-containing RNAs, called TERRA. The TERRA long noncoding RNAs have been proposed to play important roles in telomere biology, including heterochromatin formation and telomere length homeostasis. While TERRA RNAs are predominantly nuclear and localize at telomeres, little is known about the dynamics and function of TERRA molecules expressed from individual telomeres. Herein, we developed an assay to image endogenous TERRA molecules expressed from a single telomere in living human cancer cells. We show that single-telomere TERRA can be detected as TERRA RNA single particles which freely diffuse within the nucleus. Furthermore, TERRA molecules aggregate forming TERRA clusters. Three-dimensional size distribution and single particle tracking analyses revealed distinct sizes and dynamics for TERRA RNA single particles and clusters. Simultaneous time lapse confocal imaging of TERRA particles and telomeres showed that TERRA clusters transiently co-localize with telomeres. Finally, we used chemically modified antisense oligonucleotides to deplete TERRA molecules expressed from a single telomere. Single-telomere TERRA depletion resulted in increased DNA damage at telomeres and elsewhere in the genome. These results suggest that single-telomere TERRA transcripts participate in the maintenance of genomic integrity in human cancer cells.
DOI: 10.6084/m9.figshare.6143855.v1
title: Live-cell imaging reveals the dynamics and function of single-telomere TERRA molecules in cancer cells

description: Telomeres cap the ends of eukaryotic chromosomes, protecting them from degradation and erroneous recombination events which may lead to genome instability. Telomeres are transcribed giving rise to telomeric repeat-containing RNAs, called TERRA. The TERRA long noncoding RNAs have been proposed to play important roles in telomere biology, including heterochromatin formation and telomere length homeostasis. While TERRA RNAs are predominantly nuclear and localize at telomeres, little is known about the dynamics and function of TERRA molecules expressed from individual telomeres. Herein, we developed an assay to image endogenous TERRA molecules expressed from a single telomere in living human cancer cells. We show that single-telomere TERRA can be detected as TERRA RNA single particles which freely diffuse within the nucleus. Furthermore, TERRA molecules aggregate forming TERRA clusters. Three-dimensional size distribution and single particle tracking analyses revealed distinct sizes and dynamics for TERRA RNA single particles and clusters. Simultaneous time lapse confocal imaging of TERRA particles and telomeres showed that TERRA clusters transiently co-localize with telomeres. Finally, we used chemically modified antisense oligonucleotides to deplete TERRA molecules expressed from a single telomere. Single-telomere TERRA depletion resulted in increased DNA damage at telomeres and elsewhere in the genome. These results suggest that single-telomere TERRA transcripts participate in the maintenance of genomic integrity in human cancer cells.
DOI: 10.6084/m9.figshare.6143834
title: PQR_benchmark

description: some pqr files
DOI: 10.6084/m9.figshare.6143834.v1
title: PQR_benchmark

description: some pqr files
DOI: 10.6084/m9.figshare.6143834.v2
title: PQR_benchmark

description: some pqr files
DOI: 10.6084/m9.figshare.6143831
title: Zircon REE data (SHRIMP): Miocene UHT granulites from Seram, eastern Indonesia: a geochronological–REE study of zircon, monazite and garnet

description: Zircon REE data (SHRIMP) and garnet REE data (LA-ICP-MS).
DOI: 10.6084/m9.figshare.6143831.v1
title: Zircon REE data (SHRIMP): Miocene UHT granulites from Seram, eastern Indonesia: a geochronological–REE study of zircon, monazite and garnet

description: Zircon REE data (SHRIMP) and garnet REE data (LA-ICP-MS).
DOI: 10.6084/m9.figshare.6143828
title: Garnet REE data (LA-ICP-MS): Miocene UHT granulites from Seram, eastern Indonesia: a geochronological–REE study of zircon, monazite and garnet

description: Zircon REE data (SHRIMP) and garnet REE data (LA-ICP-MS).
DOI: 10.6084/m9.figshare.6143828.v1
title: Garnet REE data (LA-ICP-MS): Miocene UHT granulites from Seram, eastern Indonesia: a geochronological–REE study of zircon, monazite and garnet

description: Zircon REE data (SHRIMP) and garnet REE data (LA-ICP-MS).
DOI: 10.6084/m9.figshare.6143792
title: test.bed

description: conserved values<br>
DOI: 10.6084/m9.figshare.6143792.v1
title: test.bed

description: conserved values<br>
DOI: 10.6084/m9.figshare.6143744
title: Average RPKM values and functional description for pepper genes in all samples

description: Average RPKM values and functional description for pepper genes in all samples.
DOI: 10.6084/m9.figshare.6143744.v1
title: Average RPKM values and functional description for pepper genes in all samples

description: Average RPKM values and functional description for pepper genes in all samples.
DOI: 10.6084/m9.figshare.6143741
title: Detailed pepper transcriptome information used in this study

description: Detailed pepper transcriptome information used in this study.
DOI: 10.6084/m9.figshare.6143741.v1
title: Detailed pepper transcriptome information used in this study

description: Detailed pepper transcriptome information used in this study.
DOI: 10.6084/m9.figshare.6143720
title: axe-tutorial.tar

description: This is the data for the axe tutorial<br>
DOI: 10.6084/m9.figshare.6143672
title: Transcriptome comparisons of TsNAC1 and TsHD1

description: The transcriptome analyses of WT, 35S:TsHD1, 35S:TsNAC1, 35S:TsHD1&35S:TsNAC1 lines were performed via RNA-Seq, and 6-week-old plants were used as material.
DOI: 10.6084/m9.figshare.6143672.v2
title: Transcriptome comparisons of TsNAC1 and TsHD1

description: The transcriptome analyses of WT, 35S:TsHD1, 35S:TsNAC1, 35S:TsHD1&35S:TsNAC1 lines were performed via RNA-Seq, and 6-week-old plants were used as material.
DOI: 10.6084/m9.figshare.6143669
title: Data and code for Ecology MS "When soils cascade: effects of substrate type on assemblage size and structure in a diverse herbivore community"

description: Please find:<br>1) All datafiles used in this manuscript. <br>2) All code, with source files specified. These scripts are *not* 'tidied' to show only the final outputs that I used in the paper. Because choosing the correct analyses was often a lengthy & circuitous process, I include the entire process & annotate the code as best I could.<br>Within these long scripts, I tried to specify which analyses were used in the final MS. If I forgot to do so, and you are having trouble identifying the correct analysis, advance apologies & please contact me!
DOI: 10.6084/m9.figshare.6143672.v1
title: Transcriptome comparisons of TsNAC1 and TsHD1

description: The transcriptome analyses of WT, 35S:TsHD1, 35S:TsNAC1, 35S:TsHD1&35S:TsNAC1 lines were performed via RNA-Seq, and 6-week-old plants were used as material.
DOI: 10.6084/m9.figshare.6143645
title: Solar potential of rooftops in Cáceres city, Spain

description: Climate change is one of the challenges our society has to deal with nowadays. Photovoltaic is one of the main renewable energies and it is gaining ground all around the world. The prediction of solar radiation is crucial for this kind of energy. The aim of this work is to produce a solar potential map of rooftops the city of Cáceres (Spain) providing an overview of the employed methodology. The estimation of global radiation is based on LiDAR data of high density. Historical radiation records have been also employed to define the calculation parameters. The representation of the estimated global radiation on each building provides a wide range of new possibilities in the use of renewable energies and changes the conception of rooftops to a potential source of photovoltaic energy.
DOI: 10.6084/m9.figshare.6143645.v1
title: Solar potential of rooftops in Cáceres city, Spain

description: Climate change is one of the challenges our society has to deal with nowadays. Photovoltaic is one of the main renewable energies and it is gaining ground all around the world. The prediction of solar radiation is crucial for this kind of energy. The aim of this work is to produce a solar potential map of rooftops the city of Cáceres (Spain) providing an overview of the employed methodology. The estimation of global radiation is based on LiDAR data of high density. Historical radiation records have been also employed to define the calculation parameters. The representation of the estimated global radiation on each building provides a wide range of new possibilities in the use of renewable energies and changes the conception of rooftops to a potential source of photovoltaic energy.
DOI: 10.6084/m9.figshare.6143573
title: Smooth_muscle_cell_photonics_ZIP

description: Smooth_muscle_cell_photonics_ZIP
DOI: 10.15468/dl.pxs3ua
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Delia tumidula (Ringdahl, 1949)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085424-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7tcgzt
title: Occurrence Download

description: A dataset containing 1391 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mauremys sinensis (Gray, 1834))",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1391 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085425-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.96dcja
title: Occurrence Download

description: A dataset containing 1010 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Diabrotica virgifera LeConte, 1868",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 1010 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085426-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukhnbf
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus eldarica Medw."
 ]
}

 The dataset includes 49 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085427-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrc775
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Delia pilifemur (Ringdahl, 1933)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 61 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085428-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxmydh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Octodon pacificus Hutterer, 1994)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085429-240626123714530/datasets/export for details.