cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.745q5/10
title: Tomo processed 9 ms-1

description: Vector fields of the wake of pied flycatchers flying in a wind tunnel. Dat files containing columns of x, y, z coordinates in mm and the corresponding velocity components (Vx, Vy, Vz in ms-1). The coordinate system is right handed with x is horizontally to the right, y is vertically upwards and z is out of the xy-plane.
DOI: 10.5061/dryad.745q5/11
title: Flycatcher data structure

description: Contains the data linking each sequence to individual, mass and flight speed. All sequences only contain the vector fields used in the analysis.
DOI: 10.5061/dryad.745q5/7
title: Tomo processed 1 ms-1

description: Vector fields of the wake of pied flycatchers flying in a wind tunnel. Dat files containing columns of x, y, z coordinates in mm and the corresponding velocity components (Vx, Vy, Vz in ms-1). The coordinate system is right handed with x is horizontally to the right, y is vertically upwards and z is out of the xy-plane.
DOI: 10.5061/dryad.745q5/8
title: Tomo processed 3 ms-1

description: Vector fields of the wake of pied flycatchers flying in a wind tunnel. Dat files containing columns of x, y, z coordinates in mm and the corresponding velocity components (Vx, Vy, Vz in ms-1). The coordinate system is right handed with x is horizontally to the right, y is vertically upwards and z is out of the xy-plane.
DOI: 10.5061/dryad.745q5/9
title: Tomo processed 7 ms-1

description: Vector fields of the wake of pied flycatchers flying in a wind tunnel. Dat files containing columns of x, y, z coordinates in mm and the corresponding velocity components (Vx, Vy, Vz in ms-1). The coordinate system is right handed with x is horizontally to the right, y is vertically upwards and z is out of the xy-plane.
DOI: 10.5061/dryad.7n38s11/1
title: Wolf spider compiled data

description: Compiled species, mechanical and XRD data
DOI: 10.5061/dryad.8969jr1/1
title: Novel Object datafile

description: Raw data collected during novel object trials on both species. Columns represent: Trial- 1st or 2nd trial; Group- territory identifier; Treatment- CON (rock in middle) and EXP (duck in middle); ID- jay's unique color band code; Level- peanuts touching the central object are level 3, the middle peanuts are level 2, the furthest peanuts are level 1; Distance- in meters, how close each jay comes to the central object; Location- side of the duck (T=tail, L=left, R=right, F=front) combined with level ID; Sec- seconds in to the trial that jay approached; Latency- the number of seconds until each separate approach; Response.time- the number of seconds before the first approach; Species- CASJ (California Scrub-Jay) and MEJA (Mexican Jay).
DOI: 10.5061/dryad.8969jr1/2
title: Flight initiation distance datafile

description: Raw data collected during flight initiation distance assays on jays of both species.  Columns represent: ID- jay's unique color band code; Group- territory identifier; BS?- whether FID was collected during the breeding season; Time- time of day; Trial- whether it was the jay's 1st, 2nd, etc. FID; Observer- identifier of research collecting the FID (1 represents the first author, other numbers are field assistants); FID- the number of meters (assessed by pacing) between observer's position when the jay flew, and the jay's location; Location- how high was the jay when first approached; Species- CASJ (California Scrub-Jay) and MEJA (Mexican Jay)
DOI: 10.5061/dryad.8969jr1/3
title: Assortment by personality in jays_Rcode

description: R script used to manipulate, analyze, and visualize boldness data for both species.  This provided code works with the two provided csv data files.
DOI: 10.5061/dryad.8n5r3v1/1
title: Data from Losdat et al. on the long-term effects of paraquat

description: The file entitled "Recruits" contains all the measurements made on the 39 recruits during the early-life of the offspring (in 2010) and the measurement of colour and oxidative stress taken on the same individuals as adults (in 2011). The file entitled "Sperm" contains the data on sperm performance measured on the individuals in 2011. Each line corresponds to the value for a single sperm cell.
DOI: 10.5061/dryad.96r47g0/2
title: Shan Luo et al Functional Ecology-monoculture experiment
DOI: 10.5061/dryad.ck501/1
title: dataset_irisin_PA
DOI: 10.5061/dryad.d9s7772/1
title: DE Ecofactors 2015-2016

description: Field collected nuptial gifts from males which were measured and weighed. Type of collected nuptial gifts, prey availability and demographic structure and density of spider population
DOI: 10.5061/dryad.dv22q/1
title: data for RSOS-171824

description: This file contains original data for "MnO2-Graphene Nanosheets wrapped Mesoporous Carbon/Sulfur Composite for Lithium-Sulfur Batteries"
DOI: 10.5061/dryad.f30r1/1
title: Thermal shock, raw data

description: Raw data for experiments 1 (short term acute thermal shock experiment) and 2 (long term acute thermal shock), and hsp70 protein expression (exp 1) for the manuscript: Resurrected “ancient” Daphnia genotypes show reduced thermal stress tolerance compared to modern descendants.
DOI: 10.5061/dryad.f371754/1
title: Dryad_SNPs and resistance

description: Population allele frequencies of all SNPs used in the manuscript. These SNPs cover the three interacting species "Alcon", "Gentian" and "Myrmica". In addition, pairwise landscape resistance values are provided. Together with the supporting files provided with the manuscript, these datasets allow readers and users to re-analyze all analyses.
DOI: 10.5061/dryad.hj07m/10
title: Supplementary Materials
DOI: 10.5061/dryad.hj07m/11
title: Alignments

description: Zipped folder of all nexus files for mitochondrial gene alignments used in the study
DOI: 10.5061/dryad.jb79430/2
title: Dataset7_Dryad

description: Tar archive containing raw data for Dataset 7 in the form of 4 .sff files. Corresponding mapping files for demultiplexing are provided for each data file.
DOI: 10.5061/dryad.jb79430/4
title: Dataset9_Dryad

description: Tar archive containing 20 .fastq files representing raw, demultiplexed illumina sequencing data.
DOI: 10.5061/dryad.jb79430/5
title: Sequence_Data_For_Clustering

description: Fasta files containing the quality filtered sequences used as the basis for all clustering analyses.
DOI: 10.5061/dryad.mh084f6/1
title: site data

description: Data used for site-scale analysis, including vegetation type, time since fire (TSF), species occurrences and habitat variables
DOI: 10.5061/dryad.mh084f6/2
title: Landscape data

description: Data used in landscape-scale analysis. Includes landscape variables and species' reporting rates
DOI: 10.5061/dryad.mv352kc/1
title: Survival data across density and frequency

description: These data were collected in the laboratory. They are the data used in Experiment 1. Details for this dataset and all datasets can be found in the README file.
DOI: 10.5061/dryad.mv352kc/2
title: Differences in aggression between two strains of Drosophila melanogaster

description: These data were collected in the laboratory and were used in Experiment 2 of the manuscript.
DOI: 10.5061/dryad.mv352kc/3
title: Survival data from Experiment 2

description: These data were collected in the laboratory. They were used to assess negative frequency-dependent selection in the Experiment 2.
DOI: 10.5061/dryad.mv352kc/4
title: Fruit fly mass by Strain

description: These data were collected in the laboratory. Results to the associated analysis are found in the Supporting Information. They were used to assess any differences in mass between the strains across sex and time.
DOI: 10.5061/dryad.mv352kc/5
title: Reproductive differences between strains of fruit flies

description: These data were collected in the laboratory. They were used to assess any differences in reproductive output between the strains used in our experiment.
DOI: 10.5061/dryad.mv352kc/6
title: R Code for analyses in Kilgour et al. 2018

description: This document represents all code used for the statistical analyses in our study.
DOI: 10.5061/dryad.pc1q925/1
title: Aspergillus gene expression and growth, insect development, emericellamides

description: This file containes data on Aspergillus gene expression and colony growth, fly development, and emericellamides for Caballero Ortiz et al., Phenotypic responses to microbial volatiles render a mould fungus more susceptible to insect damage
DOI: 10.5061/dryad.r3140/1
title: De Jong and Fowler data archive

description: The first worksheet in this Excel file has the data we analyzed for this paper. The second worksheet in this Excel file has metadata (variable codes, etc.) for this data set.
DOI: 10.5061/dryad.r51j7/3
title: HabitatVariables_Hawaii_Parcatus_2morphs_100ind

description: Used for environmental variables in distance-based redundancy analysis. Habitat variables for 100 Paracirrhites arcatus individuals of two color morphs collected on Hawaii Island 2010.
DOI: 10.5061/dryad.r51j7/4
title: GeneticDistanceMatrix_Euclidean_Hawaii_Parcatus_2morphs_100ind

description: Genetic distance matrix (Euclidean distances) for distance-based redundancy analysis, calculated in Genodive using 30 microsatellite genotypes of 100 Paracirrhites arcatus (2 color morphs) from Hawaii Island.
DOI: 10.5061/dryad.vm407/1
title: Tables and figure 2 data.

description: excel sheets containing the data of both tables and of the plots in figure 2.
DOI: 10.5061/dryad.0vk58cn/1
title: SurveyData_Laioloetal

description: Site x species matrix of bird, grasshopper and bumblebee abundances in the Cantabrian Mountains, NW Spain. Data were collected by the authors of the study. Average annual temperature (0.1 ºC), accumulated precipitation (0.1 mm) elevation (m a.s.l.), habitat heterogeneity (Simpson's diversity  Index) are also provided.
DOI: 10.5061/dryad.19s12tm/1
title: Soil and root trait data of roaside successional gradient in Montpellier, France

description: Data were collected in the field on roadsides near Montpellier, South of France. Abbreviated headlines are as follows: "Roadside" = Roadside; "Plot" = Plant communities on the roadsides; "GPS_coordinates" = GPS coordinate from the selected roadsides; "Age" = Age of the roadside in years; "Mowing" = Mowing regime (M=Mown, U=Unmown); "Road_Type" = Type of roadside (E=Embankment, C=Cutting); "Clay" = Clay content in soil in %; "Silt" = Silt content in soil in %; "Sand" = Sand content in soil in %; "SOC" = Soil organic content in g.kg-1; "SoilN" = Soil total nitrogen content in g.kg-1; "CEC" = Cationic exchange capacity in meq.kg-1; "Soil_pH" = Soil pH in water; "SoilP" = Soil available phosphorus in g.kg-1; "SRL" = Specific root length in m.g-1; "shannon" = Shannon index; "simpson" = Simpson index; "RNC" = Root nitrogen content in mg.g-1; "RCC" = Root carbon content in mg.g-1; "RDMC" = Root dry matter content in mg.g-1; "Dm" = Mean root diameter in mm; "RMD" = Root mass density in kg.m-3 of soil; "graminoid" = ground cover of graminoid species in %; "herbaceous" = ground cover of herbaceous species in %; "shrub" = ground cover of shrub species in %; "tree" = ground cover of tree species in %
DOI: 10.5061/dryad.1kt5v0q/1
title: Data associated with the paper

description: Plant metrics, aphid and ant responses and foliar amino acids
DOI: 10.5061/dryad.28sm8.1
title: Data from: Olfaction written in bone: cribriform plate size parallels olfactory receptor gene repertoires in Mammalia
DOI: 10.5061/dryad.28sm8.1/16.1
title: Assembly statistics for genome assemblies from which olfactory receptor gene counts were extracted, Excel format

description: Abbreviations, BGI: Beijing Genomics Institute; BCM: Baylor College of Medicine; Broad: Broad Institute; ICGSC: International Cat Genome Sequencing Consortium; WU: Washington University. Sources of data: NCBI Assembly, University of California Santa Cruz Genome Browser, Genome Reference Consortium.
DOI: 10.5061/dryad.28sm8.1/18.1
title: Summary statistics, Excel format

description: Abbreviations: CP, Cribriform plate; RelCP, Relative cribriform plate size; ORG, Olfactory receptor genes; PGLS, Phylogenetic generalized least squares.
DOI: 10.5061/dryad.28sm8.1/19.1
title: Summary statistics; .csv format

description: Abbreviations: CP, Cribriform plate; RelCP, Relative cribriform plate size; ORG, Olfactory receptor genes; PGLS, Phylogenetic generalized least squares.
DOI: 10.5061/dryad.28sm8.1/23.1
title: Sources and morphological data for felid species; .csv format

description: Museums and collections are as follows: FMNH: Field Museum of Natural History; LACM: Museum of Natural History of Los Angeles County; LACMRLP: Rancho La Brea Tar Pits; MMNH: James Ford Bell Museum University of Minnesota, Minneapolis; UCLAEEB: University of California Los Angeles Department of Ecology and Evolutionary Biology.  aEstimated body masses (in kg) are from [1] except for two species, Felis catus [9] and Smilodon fatalis [19] (see table S8 references).
DOI: 10.5061/dryad.28sm8.1/8.1
title: Key resource table, .csv format

description: Key resource table for sample specimens, CT scanning machines and facilities, and digital imaging software.
DOI: 10.5061/dryad.28sm8.2/18.2
title: Summary statistics, Excel format

description: Abbreviations: CP, Cribriform plate; RelCP, Relative cribriform plate size; ORG, Olfactory receptor genes; PGLS, Phylogenetic generalized least squares.
DOI: 10.5061/dryad.28sm8.2/19.2
title: Summary statistics; .csv format

description: Abbreviations: CP, Cribriform plate; RelCP, Relative cribriform plate size; ORG, Olfactory receptor genes; PGLS, Phylogenetic generalized least squares.
DOI: 10.5061/dryad.28sm8.2/22.2
title: Sources and morphological data for felid species; Excel format

description: Museums and collections are as follows: FMNH: Field Museum of Natural History; LACM: Museum of Natural History of Los Angeles County; LACMRLP: Rancho La Brea Tar Pits; MMNH: James Ford Bell Museum University of Minnesota, Minneapolis; UCLAEEB: University of California Los Angeles Department of Ecology and Evolutionary Biology.  aEstimated body masses (in kg) are from [1] except for two species, Felis catus [9] and Smilodon fatalis [19] (see table S8 references).
DOI: 10.5061/dryad.28sm8.2/23.2
title: Sources and morphological data for felid species; .csv format

description: Museums and collections are as follows: FMNH: Field Museum of Natural History; LACM: Museum of Natural History of Los Angeles County; LACMRLP: Rancho La Brea Tar Pits; MMNH: James Ford Bell Museum University of Minnesota, Minneapolis; UCLAEEB: University of California Los Angeles Department of Ecology and Evolutionary Biology.  aEstimated body masses (in kg) are from [1] except for two species, Felis catus [9] and Smilodon fatalis [19] (see table S8 references).
DOI: 10.5061/dryad.3hh96v4/1
title: Ecological Differentiation

description: Accompanying vegetation and the attributed Landolt indicator values
DOI: 10.5061/dryad.3hh96v4/2
title: Morphological differentiation

description: character values of morphology
DOI: 10.5061/dryad.3hh96v4/3
title: TransplantsMonitoring

description: Fitness Monitoring in natural populations
DOI: 10.5061/dryad.3hh96v4/4
title: Transplants Survival

description: Number of seedlings recorded in natural populations
DOI: 10.5061/dryad.3hh96v4/5
title: Germination and Fitness recorded in climate chambers
DOI: 10.5061/dryad.3rp58/1
title: Data Pre to Follow Up
DOI: 10.5061/dryad.42tv030/1
title: Zebra Finch Yolk T and Aggression

description: This file contains the ID of each Zebra Finch female ('ID'), the season the experiment was conducted ('Date'), the treatment females received (control or intrusion; 'Treatment'), which clutch they received the treatment during ('Clutch'), how much yolk testosterone they allocated ('Yolk T'), how many days of intrusions they received prior to clutch initiation ('# of Intrusions'), and their average aggression score ('Average Aggression').
DOI: 10.5061/dryad.44pp0.2/1.2
title: Wolverine traffic and GPS data

description: Steps from wolverine GPS data in northern Alberta. Steps are lines connecting sequential GPS relocations. “Start” refers to the start point of the step and “End” refers to the end point of the step. For example, “traffic_end” is the traffic volume on the road closest to the end point of the step. The distances to roads are indicated by “road_start” and “road_end”. “Twilight” is the time until civil twilight.  “Used” refers to real steps (coded 1) versus available steps (coded 0). "Cluster" is a group of available data points associated with a used data point (this is needed for conditional logistic regression). "SL_m" is the distance (m) from the start to end point of a step. NOTE: Sensitive GPS locations were removed from this version of the file in accordance with the agreement under which the data were acquired.
DOI: 10.5061/dryad.4bm23/1
title: Leishmania guyanensis LgCL085 genome sequence files

description: Leishmania guyanensis LgCL085 genome sequence files
DOI: 10.5061/dryad.4bm23/2
title: Leishmania guyanensis LgCL085 chromosome annotation files

description: Leishmania guyanensis LgCL085 chromosome annotation files
DOI: 10.5061/dryad.4bm23/3
title: Leishmania guyanensis LgCL085 bin contig annotation files

description: Leishmania guyanensis LgCL085 bin contig annotation files
DOI: 10.5061/dryad.4bm23/4
title: Leishmania naiffi LnCL223 genome sequence files

description: Leishmania naiffi LnCL223 genome sequence files
DOI: 10.5061/dryad.4bm23/5
title: Leishmania naiffi LnCL223 chromosome annotation files

description: Leishmania naiffi LnCL223 chromosome annotation files
DOI: 10.5061/dryad.4h53m7n/1
title: Allozyme data of Trifolium alpestre populations

description: To calculate genetic and genotypic diversity indices and distinguish genotypes from five Estonian Trifolium alpestre (sub)populations allozyme markers were used. Five enzymes (AAT, EST, LAP, PRX, SOD) provided altogether seven polymorphic loci with sufficiently distinct allozyme bands. Data contained in this file are prepared for population genetic analysis using program GenAlex. Exact information how this data was obtained and analysed is described in corresponding manuscript.
DOI: 10.5061/dryad.4m281/1
title: Bleph lineages R data file

description: contains data on host and distribution for all barcoded specimens, the DNA distance matrix for specimens included, and the phylogeny used in data analyses
DOI: 10.5061/dryad.4m281/2
title: diversification tests R data file

description: contains input and output for diversification tests reported, using fitdAICrc function of the R package laser
DOI: 10.5061/dryad.4m281/3
title: gamma simulations R script

description: R script that calculates gamma statistic on set of simulated trees with specified percentage of tips removed to determine significance level for gamma statistic
DOI: 10.5061/dryad.4m281/4
title: laser simulations R script

description: script that calculated deltaAIC statistic in laser on set of simulated trees with specified percentage of tips removed to determine significance level for deltaAIC statistic after fitting Yule, birth-death, DDX, and DDL models of diversification
DOI: 10.5061/dryad.4m281/5
title: character mapping R data file

description: contains input and some output for character mapping and character evolution tests reported
DOI: 10.5061/dryad.6224p/2
title: Bangladesh leech data

description: Results of a blastn search of sequences obtained from Sanger sequencing the blood meals of 191 leeches collected in Bangladesh in October, 2015. Site refers to the four forest patches where leeches were collected: Atora Hill Reserve Forest (AHRF), Patharia Hill Reserve Forest (PHRF), Rajkandi Reserve Forest (RRF), and Tarap Hill Reserve Forest (THRF). A 1% gap indicates that the best match was at least a 1% better percent identity than the next best option.
DOI: 10.5061/dryad.73qg8/1
title: Aquatica_ficta

description: This .zip contains eight 32 minute recordings of Aquatica ficta alarm flash intensity, each accompanied a key that indicates the condition of the ambient light environment during this time.
DOI: 10.5061/dryad.7n38s11/2
title: Lacava_wolf spider original XRD outputs

description: Wide angle X-ray diffraction outputs for all species
DOI: 10.5061/dryad.7n38s11/3
title: Lacava_wolf spider silk mechanics data

description: Original silk mechanics data for all species
DOI: 10.5061/dryad.7n38s11/4
title: Lacava_wolf spider stress-strain curve original data

description: Mechanical data used to generate stress-strain curves
DOI: 10.5061/dryad.8q0p192/1
title: Data set of Ectopic fat obesity presents the greatest risk for incident type 2 diabetes: a population-based longitudinal study.
DOI: 10.5061/dryad.9m0f7/1
title: Yang_JEB_ESM_StatAnalysis

description: R markdown document (.Rmd) of all analyses described in the manuscript. Necessary descriptions of the variables and statistical details are included in the comments
DOI: 10.5061/dryad.9m0f7/2
title: Yang_JEB_ESM_rawdata

description: Raw data file for input to the R markdown document
DOI: 10.5061/dryad.f371754/2
title: Dryad_SNP sequences

description: Coverage and flanking sequences of all SNPs used in the manuscript.
DOI: 10.5061/dryad.g1qg040/1
title: Survival

description: Survival data for mesocosm experiments
DOI: 10.5061/dryad.g1qg040/2
title: Trials

description: Mating trials experiment
DOI: 10.5061/dryad.g1qg040/3
title: gomez_llano_et_al

description: Code used to analyse the data
DOI: 10.5061/dryad.jv98k/1
title: Data-PONE-D-17-07823_anonymized
DOI: 10.5061/dryad.q90rp/1
title: Fig. S1

description: electronic supplementary material, figure S1
DOI: 10.5061/dryad.q90rp/2
title: Tables S1-S6

description: electronic supplementary material, table S1-S6
DOI: 10.5061/dryad.q90rp/3
title: Supplementary references

description: electronic supplementary material, supplementary references
DOI: 10.5061/dryad.qn254/1
title: PTX_Induced_Channel_Monomer_Vilallongaetal_Fig_2_3

description: Source code implemented in UPPAAL to simulate activities of the channel through the Na/K-pump induced by the palytoxin. In this implementation, the palytoxin effect on the Na/K-pump is described considering the induced channel as a monomer.
DOI: 10.5061/dryad.qn254/2
title: PTX_Induced_Channel_Diprotomer_Vilallongaetal_Fig_5_6

description: Source code implemented in UPPAAL to simulate activities of the channel through the Na/K-pump induced by the palytoxin. In this implementation, the palytoxin effect on the Na/K-pump is described considering the induced channel as a diprotomeric complex.
DOI: 10.5061/dryad.sk2pg32/1
title: Viral suppression

description: Viral suppression for HIV-infected pregnant women initiating ART for the first time.
DOI: 10.5061/dryad.0f454q8/1
title: e-References_Clinical and neuropsychological tests

description: The appendix includes the clinical and neuropsychological references list used in the GAP project.
DOI: 10.5061/dryad.0f454q8/2
title: Supplementary tables Ecay-Torres

description: These supplemetary tables contain the results of the intermediate generalized linear models needed to select the variables of the finals models shown in the manuscript.
DOI: 10.5061/dryad.16g72gk/1
title: R script and code for cluster-based association and QTL mapping
DOI: 10.5061/dryad.28sm8.1/10.1
title: Cribriform plate surface area data for individual specimens, .csv format

description: Identification, source, sex and morphological data for sample species.  Abbreviations, AMNH: American Museum of Natural History.  CMNH: Cleveland Museum of Natural History. DLC: Duke Lemur Center. DUPC: Duke University Primate Center. IZCAS: Institute of Zoology of the Chinese Academy of Sciences. LACM: Natural History Museum of Los Angeles County. LACMRLP: Rancho La Brea Tar Pits. MVZ: Museum of Vertebrate Zoology. SDSNH: San Diego Society of Natural History. UCLA: Dickey Collection at the University of California Los Angeles. UCLAEEB: UCLA Department of Ecology and Evolutionary Biology. USNM: National Museum of Natural History. UTO: University of Texas Austin. TMM: Texas Memorial Museum. *The presence of a cribriform plate in the ethmoid bone of the bottlenose dolphin (Tursiops truncatus) could not be established in this study.