cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id406256.2
title: StrainInfo SI-ID 406256.2

description: StrainInfo dataset 406256 about a strain of Xenorhabdus magdalenensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406257.2
title: StrainInfo SI-ID 406257.2

description: StrainInfo dataset 406257 about a strain of Megasphaera elsdenii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406258.3
title: StrainInfo SI-ID 406258.3

description: StrainInfo dataset 406258 about a strain of Dyadobacter koreensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406259.3
title: StrainInfo SI-ID 406259.3

description: StrainInfo dataset 406259 about a strain of Peptoniphilus faecalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406260.3
title: StrainInfo SI-ID 406260.3

description: StrainInfo dataset 406260 about a strain of Jhaorihella thermophila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.15468/dl.9mbfry
title: Occurrence Download

description: A dataset containing 39561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Austrostipa scabra (Lindl.) S.W.L.Jacobs & J.Everett"
 ]
}

 The dataset includes 39561 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005033-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id406261.2
title: StrainInfo SI-ID 406261.2

description: StrainInfo dataset 406261 about a strain of Monocillium gamsii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406262.2
title: StrainInfo SI-ID 406262.2

description: StrainInfo dataset 406262 about a strain of Massiliimalia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406263.2
title: StrainInfo SI-ID 406263.2

description: StrainInfo dataset 406263 about a strain of Clostridium paraputrificum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406264.2
title: StrainInfo SI-ID 406264.2

description: StrainInfo dataset 406264 about a strain of Campylobacter jejuni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406265.2
title: StrainInfo SI-ID 406265.2

description: StrainInfo dataset 406265 about a strain of Myroides odoratimimus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406266.2
title: StrainInfo SI-ID 406266.2

description: StrainInfo dataset 406266 about a strain of Psychrilyobacter. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406267.2
title: StrainInfo SI-ID 406267.2

description: StrainInfo dataset 406267 about a strain of Enterococcus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406268.2
title: StrainInfo SI-ID 406268.2

description: StrainInfo dataset 406268 about a strain of Lactobacillus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406269.2
title: StrainInfo SI-ID 406269.2

description: StrainInfo dataset 406269 about a strain of Burkholderia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406270.2
title: StrainInfo SI-ID 406270.2

description: StrainInfo dataset 406270 about a strain of a not identified species. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406271.2
title: StrainInfo SI-ID 406271.2

description: StrainInfo dataset 406271 about a strain of Staphylococcus aureus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406272.3
title: StrainInfo SI-ID 406272.3

description: StrainInfo dataset 406272 about a strain of Catenibacillus scindens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406273.2
title: StrainInfo SI-ID 406273.2

description: StrainInfo dataset 406273 about a strain of Micromonospora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406274.2
title: StrainInfo SI-ID 406274.2

description: StrainInfo dataset 406274 about a strain of a not identified species. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406275.3
title: StrainInfo SI-ID 406275.3

description: StrainInfo dataset 406275 about a strain of Sulfurovum aggregans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406276.3
title: StrainInfo SI-ID 406276.3

description: StrainInfo dataset 406276 about a strain of Serinibacter arcticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406277.3
title: StrainInfo SI-ID 406277.3

description: StrainInfo dataset 406277 about a strain of Gleimia hominis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406278.2
title: StrainInfo SI-ID 406278.2

description: StrainInfo dataset 406278 about a strain of Streptomyces. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406279.2
title: StrainInfo SI-ID 406279.2

description: StrainInfo dataset 406279 about a strain of Bacteroides caccae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406280.3
title: StrainInfo SI-ID 406280.3

description: StrainInfo dataset 406280 about a strain of Phocaeicola faecicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406281.3
title: StrainInfo SI-ID 406281.3

description: StrainInfo dataset 406281 about a strain of Sphingomonas polyaromaticivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406282.3
title: StrainInfo SI-ID 406282.3

description: StrainInfo dataset 406282 about a strain of Ezakiella peruensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406283.2
title: StrainInfo SI-ID 406283.2

description: StrainInfo dataset 406283 about a strain of a not identified species. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406284.2
title: StrainInfo SI-ID 406284.2

description: StrainInfo dataset 406284 about a strain of Methylophilus quaylei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406285.2
title: StrainInfo SI-ID 406285.2

description: StrainInfo dataset 406285 about a strain of Enterococcus durans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406286.2
title: StrainInfo SI-ID 406286.2

description: StrainInfo dataset 406286 about a strain of Streptomyces. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406287.3
title: StrainInfo SI-ID 406287.3

description: StrainInfo dataset 406287 about a strain of Winogradskyella sediminis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406288.2
title: StrainInfo SI-ID 406288.2

description: StrainInfo dataset 406288 about a strain of Paenibacillus dendritiformis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406289.2
title: StrainInfo SI-ID 406289.2

description: StrainInfo dataset 406289 about a strain of Bacteroides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406290.3
title: StrainInfo SI-ID 406290.3

description: StrainInfo dataset 406290 about a strain of Kutzneria buriramensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406291.2
title: StrainInfo SI-ID 406291.2

description: StrainInfo dataset 406291 about a strain of Segatella copri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406292.2
title: StrainInfo SI-ID 406292.2

description: StrainInfo dataset 406292 about a strain of Caulobacter. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406293.3
title: StrainInfo SI-ID 406293.3

description: StrainInfo dataset 406293 about a strain of Amphibacillus marinus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406294.2
title: StrainInfo SI-ID 406294.2

description: StrainInfo dataset 406294 about a strain of Viridibacillus arvi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406295.3
title: StrainInfo SI-ID 406295.3

description: StrainInfo dataset 406295 about a strain of Virgibacillus massiliensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406296.2
title: StrainInfo SI-ID 406296.2

description: StrainInfo dataset 406296 about a strain of Micromonospora aurantiaca. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406297.2
title: StrainInfo SI-ID 406297.2

description: StrainInfo dataset 406297 about a strain of Streptomyces. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406298.2
title: StrainInfo SI-ID 406298.2

description: StrainInfo dataset 406298 about a strain of Actinoallomurus coprocola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406299.3
title: StrainInfo SI-ID 406299.3

description: StrainInfo dataset 406299 about a strain of Natranaerovirga pectinivora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406300.3
title: StrainInfo SI-ID 406300.3

description: StrainInfo dataset 406300 about a strain of Salirhabdus salicampi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406301.2
title: StrainInfo SI-ID 406301.2

description: StrainInfo dataset 406301 about a strain of Paracoccus yeei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406302.2
title: StrainInfo SI-ID 406302.2

description: StrainInfo dataset 406302 about a strain of Altererythrobacter lauratis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406304.2
title: StrainInfo SI-ID 406304.2

description: StrainInfo dataset 406304 about a strain of Klebsiella oxytoca. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406305.3
title: StrainInfo SI-ID 406305.3

description: StrainInfo dataset 406305 about a strain of Holzapfeliella floricola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406306.3
title: StrainInfo SI-ID 406306.3

description: StrainInfo dataset 406306 about a strain of Virgibacillus subterraneus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406307.2
title: StrainInfo SI-ID 406307.2

description: StrainInfo dataset 406307 about a strain of Klebsiella pneumoniae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406308.2
title: StrainInfo SI-ID 406308.2

description: StrainInfo dataset 406308 about a strain of Trueperella abortisuis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406309.3
title: StrainInfo SI-ID 406309.3

description: StrainInfo dataset 406309 about a strain of Bombilactobacillus mellifer. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406310.2
title: StrainInfo SI-ID 406310.2

description: StrainInfo dataset 406310 about a strain of Myxacorys almedinensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406311.2
title: StrainInfo SI-ID 406311.2

description: StrainInfo dataset 406311 about a strain of Enterococcus hirae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406312.2
title: StrainInfo SI-ID 406312.2

description: StrainInfo dataset 406312 about a strain of Brevibacillus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.5281/zenodo.14793857
title: Dataset for the paper "Orientation Dependence of Relative Current Blockade in Single Amino Acid Translocation through a Graphene Nanopore."

description: In the Analysis folder, there are separate folders for translocation in monolayer and bilayer graphene pore. In each of this folder, tha raw data derived from the five replicas of production run, has been saved. To describe the naming, PQ_pull_zx_1_ALA.dat represents a quantity PQ for the 1st trajcetory of translocation of Alanine (ALA) in zx orientation. For static amino acids, _fixed_ has been used in the naming instead of _pull_ .

Current: This folder contains the currents calculated from the trajcetories. The pull folder is for the case when the amino acids are translocating. The static folder is for the case when the amino acids are fixed at the center of the pore. The first column is the time, the second column represents the current.

Force: This contains pulling force profiles derived from the translocation studies. . The first column is the time, the second column represents the force.

Rg: Here, the total radius of gyration (column 2) and radius of gyration about x,y,z axes (column 3,4,5) for translocating amino acids are stored.

Dipole: The magnitude of the total dipole moment of the amino acids (column 5) and their components (x-comp: column 2, y-comp: column 3, z-comp: column 4) has been stored here.

Cosphi: This folder contains the alignment of dipole moment vector with respect to the Z axis in terms of cosine of the angle between them.

-------------------------------------------------------------------------------------------

In the Processed_I&F folder, we store the data for current (I) and force (F) after processing the raw data. For example, the file ALA_ml_zx_avg.txt represents the data for ALA translocation in zx orientation through a monolayer graphene pore. The first column is the z coordinate of the COM of the amino acid, the second one is for force, the third one represents current and the time is in the fourth column.

-------------------------------------------------------------------------------------------

In the folder named Trajectory, as examples we provide the trajcetory (.xtc) file along with structure file(.gro) for one run of i) openpore simulation in 1V, ii) translocation (1V) of Proline (PRO) in zz orientation for both monolayer and bilayer graphene pore, iii) static/fixed ARG in zx orientation at monolayer pore.

-------------------------------------------------------------------------------------------

We also provide videos demonstrating the trajcetory of ARG in zx and zz orientation as examples of pulling.
DOI: 10.5281/zenodo.14793858
title: Dataset for the paper "Orientation Dependence of Relative Current Blockade in Single Amino Acid Translocation through a Graphene Nanopore."

description: In the Analysis folder, there are separate folders for translocation in monolayer and bilayer graphene pore. In each of this folder, tha raw data derived from the five replicas of production run, has been saved. To describe the naming, PQ_pull_zx_1_ALA.dat represents a quantity PQ for the 1st trajcetory of translocation of Alanine (ALA) in zx orientation. For static amino acids, _fixed_ has been used in the naming instead of _pull_ .

Current: This folder contains the currents calculated from the trajcetories. The pull folder is for the case when the amino acids are translocating. The static folder is for the case when the amino acids are fixed at the center of the pore. The first column is the time, the second column represents the current.

Force: This contains pulling force profiles derived from the translocation studies. . The first column is the time, the second column represents the force.

Rg: Here, the total radius of gyration (column 2) and radius of gyration about x,y,z axes (column 3,4,5) for translocating amino acids are stored.

Dipole: The magnitude of the total dipole moment of the amino acids (column 5) and their components (x-comp: column 2, y-comp: column 3, z-comp: column 4) has been stored here.

Cosphi: This folder contains the alignment of dipole moment vector with respect to the Z axis in terms of cosine of the angle between them.

-------------------------------------------------------------------------------------------

In the Processed_I&F folder, we store the data for current (I) and force (F) after processing the raw data. For example, the file ALA_ml_zx_avg.txt represents the data for ALA translocation in zx orientation through a monolayer graphene pore. The first column is the z coordinate of the COM of the amino acid, the second one is for force, the third one represents current and the time is in the fourth column.

-------------------------------------------------------------------------------------------

In the folder named Trajectory, as examples we provide the trajcetory (.xtc) file along with structure file(.gro) for one run of i) openpore simulation in 1V, ii) translocation (1V) of Proline (PRO) in zz orientation for both monolayer and bilayer graphene pore, iii) static/fixed ARG in zx orientation at monolayer pore.

-------------------------------------------------------------------------------------------

We also provide videos demonstrating the trajcetory of ARG in zx and zz orientation as examples of pulling.
DOI: 10.60712/si-id406313.2
title: StrainInfo SI-ID 406313.2

description: StrainInfo dataset 406313 about a strain of Paracoccaceae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id406314.2
title: StrainInfo SI-ID 406314.2

description: StrainInfo dataset 406314 about a strain of Vibrio splendidus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.