cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kxpb5c
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-115.78494 -12.21320,-55.21506 -12.21320,-55.21506 30.21320,-115.78494 30.21320,-115.78494 -12.21320))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pilea glabra S.Watson"
 ]
}

 The dataset includes 177 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019452-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13373782
title: Variation in species' dispersal capacities amplifies effects of habitat loss and fragmentation on biodiversity loss

description: Simulation data and model belonging to the manuscript 'Variation in species’ dispersal capacities amplifies effects of habitat loss and fragmentation on biodiversity loss', by Monique de Jager and Edwin Pos. The folder 'Generated data' holds the generated simulation data. The folder 'Model' contains the 2-dimensional, semi-spatial, near-neutral, individual-based model. A description of the model can be found in the file 'README.md'.
DOI: 10.5281/zenodo.13373783
title: Solving the SLoSS debate: Scale-dependent effects of habitat fragmentation on biodiversity loss - Data and Model

description: Simulation data and model belonging to the manuscript 'Solving the SLoSS debate: Scale-dependent effects of habitat fragmentation on biodiversity loss', by Monique de Jager and Edwin Pos. The folder 'Generated data' holds the generated simulation data. The folder 'Model' contains the 2-dimensional, semi-spatial, near-neutral, individual-based model. A description of the model can be found in the file 'README.md'.
DOI: 10.5281/zenodo.14832924
title: Variation in species' dispersal capacities amplifies effects of habitat loss and fragmentation on biodiversity loss

description: Simulation data and model belonging to the manuscript 'Variation in species’ dispersal capacities amplifies effects of habitat loss and fragmentation on biodiversity loss', by Monique de Jager and Edwin Pos. The folder 'Generated data' holds the generated simulation data. The folder 'Model' contains the 2-dimensional, semi-spatial, near-neutral, individual-based model. A description of the model can be found in the file 'README.md'.
DOI: 10.6092/unibo/amsacta/8215
title: Hyperspectral imaging for precision nitrogen fertilization management: an open access dataset

description: The following dataset was used for the publication "Hyperspectral imaging for precision nitrogen management: a comparative exploration of two methodological approaches to estimate optimal nitrogen rate in processing tomato" (DOI 10.1016/j.atech.2025.100802). The dataset includes hyperspectral reflectance data from 400 to 1000 nm, monitored in an open field experiment in tomato crop with different nitrogen fertilization level. At five moments of the growing season the aboveground biomass (AGB) and the nitrogen nutrition index (NNI) were monitored and reported in the following dataset. On the same sampling date, the crop reflectance was monitored with an unmanned aerial vehicle. The data were generated in the framework of the “FrontAg Nexus” project.
DOI: 10.15161/oar.it/211733
title: Carta Geologica d'Italia alla scala 1:50.000, F. 320 Castel del Piano

description: Carta Geologica d’Italia alla scala 1:50.000, F. 320 Castel del Piano
DOI: 10.5281/zenodo.14832897
title: Prueba

description: Test
DOI: 10.5281/zenodo.14832896
title: Prueba

description: Test
DOI: 10.5281/zenodo.14832933
title: Prueba

description: Test
DOI: 10.15468/dl.2dbh8j
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Ceiba pentandra (L.) Gaertn.",
 "Year 1975-2025"
 ]
}

 The dataset includes 81 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019454-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14832979
title: ABL & MS Study
DOI: 10.5281/zenodo.14832980
title: ABL & MS Study
DOI: 10.15468/dl.dup7sz
title: Occurrence Download

description: A dataset containing 4616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Caprimulgidae",
 "Year 1998-2025"
 ]
}

 The dataset includes 4616 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019455-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cs392k
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.04495 -17.34924,-23.95505 -17.34924,-23.95505 12.34924,-98.04495 12.34924,-98.04495 -17.34924))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tovomita spruceana Planch. & Triana"
 ]
}

 The dataset includes 265 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019456-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.11583/dtu.28323029
title: Database of empirical rebound effect studies (in sustainability)

description: This database encompasses empirical cases of rebound effects derived from a systematic literature review of empirical studies. The goal of this review is to consolidate and systematize the body of empirical rebound effect studies. The database allows for the exploration of rebound effects across different social needs areas (mobility, nutrition, consumables, and housing) and sustainability strategies (efficiency, effectiveness, and sufficiency) at the product-, product-service system-, and socio-technical system- level.This dataset is supplement to the review paper entitled <i>Multidisciplinary perspectives on rebound effects in sustainability: A systematic review </i>(Andrew & Pigosso, 2023).
DOI: 10.11583/dtu.28323029.v1
title: Database of empirical rebound effect studies (in sustainability)

description: This database encompasses empirical cases of rebound effects derived from a systematic literature review of empirical studies. The goal of this review is to consolidate and systematize the body of empirical rebound effect studies. The database allows for the exploration of rebound effects across different social needs areas (mobility, nutrition, consumables, and housing) and sustainability strategies (efficiency, effectiveness, and sufficiency) at the product-, product-service system-, and socio-technical system- level.This dataset is supplement to the review paper entitled <i>Multidisciplinary perspectives on rebound effects in sustainability: A systematic review </i>(Andrew & Pigosso, 2023).
DOI: 10.15468/dl.k66b2h
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Alstonia boonei De Wild.",
 "Year 1975-2025"
 ]
}

 The dataset includes 89 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019457-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmbmv7
title: Occurrence Download

description: A dataset containing 1931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dispholidus typus (Smith, 1828)"
 ]
}

 The dataset includes 1931 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019458-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mm75ag
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Lophira alata Banks ex C.F.Gaertn.",
 "Year 1975-2025"
 ]
}

 The dataset includes 52 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019459-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7hue5z
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alectoris rufa (Linnaeus, 1758))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Material citation)"
 ]
 }
 },
 "Year is greater than or equal to 2019",
 "Year is less than or equal to 2024",
 "HasCoordinate is true",
 "Geometry POLYGON ((-31.5 39.5, -24.5 39.5, -24.5 36.5, -31.5 36.5, -31.5 39.5))"
 ]
}

 The dataset includes 173 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019460-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2zx258
title: Occurrence Download

description: A dataset containing 512764 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Long-term cetacean monitoring in the Azores based on whale watching observations (2009-2020), DFO Maritimes Region Cetacean Sightings, DECAF - AUTEC Beaked Whales - Multiple Sensors - DTag, The Retrospective Analysis of Antarctic Tracking (Standardised) Data from the Scientific Committee on Antarctic Research, iNaturalist Research-grade Observations, Observation.org, Nature data from around the World, Fin whale localized acoustic detections off Kauai 2011-2017, LifeWatch observatory data: permanent Cetacean passive acoustic sensor network in the Belgian part of the North Sea)",
 "OccurrenceStatus is Present",
 "TaxonKey is Cetacea",
 "Year 1998-2025"
 ]
}

 The dataset includes 512764 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019453-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5hukjn
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Entandrophragma angolense (Welw.) C.DC.",
 "Year 1975-2025"
 ]
}

 The dataset includes 53 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019463-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehqz8j
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Lophira alata Banks ex C.F.Gaertn.",
 "Year 1975-2025"
 ]
}

 The dataset includes 52 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019464-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14790081
title: XYZ e-wallet playstore reviews July 2023 - June 2024
DOI: 10.5281/zenodo.14790082
title: XYZ e-wallet playstore reviews July 2023 - June 2024
DOI: 10.15468/dl.cj2t68
title: Occurrence Download

description: A dataset containing 6932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-77.90072 8.803,-78.81093 8.5674,-78.66157 6.98961,-77.8096 4.85239,-77.8096 3.51636,-78.54799 2.19658,-77.3747 2.38888,-76.79227 3.49172,-76.60109 4.13704,-76.48102 5.6179,-76.58979 6.64709,-77.02902 7.70434,-77.30389 8.61638,-77.90072 8.803))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibia"
 ]
}

 The dataset includes 6932 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019465-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sn4azx
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera uncia (Schreber, 1775)"
 ]
}

 The dataset includes 204 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0332784-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13832665
title: Test dataset for omero-vitessce

description: Test datasets for omero-vitessce

Dataset designed for testing the omero-vitessce (https://github.com/NFDI4BIOIMAGE/omero-vitessce) plugin for OMERO (https://www.openmicroscopy.org/omero/). The omero-vitessce repository contains a cropped version of this dataset for automated testing (https://github.com/NFDI4BIOIMAGE/omero-vitessce/tree/main/test/data/MB266).

Files



MAX_MBEN_ff_Xenium_0018446_MB-266_DAPI_2024-01-23_12.47.34_Fused_405nm_corr_cropped.png = PNG image with the DAPI channel.

MAX_MBEN_ff_Xenium_0018446_MB-266_DAPI_2024-01-23_12.47.34_Fused_405nm_corr_cropped_cp_masks.png= Cell segmentation mask pixel values correspond to cell identities, 0 = background).

cells.csv = 

embeddings.csv = UMAP embeddings for drawing an interactive scatterplot.

feature_matrix.csv = Transcript counts in each cell.

transcripts.csv = Gene name and coordinates (pixel) of each transcript.

VitessceConfig.json = Example configuration file generated by the omero-vitessce plugin for the Vitessce, an equivalent file can be generated by using the form provided by the plugin in OMERO.web.


See the repository README file for more details on the formats of these files: https://github.com/NFDI4BIOIMAGE/omero-vitessce?tab=readme-ov-file#config-files

Usage



Add the omero-web-zarr and omero-vitessce plugins to your OMERO.web installation.

Import the images into OMERO in the same dataset.

Attach all the .csv data files.

Use the form in the "Vitessce" tab of the right-panel to generate a configuration file and open the Vitessce viewer.


See the repository README file for more details on usage (https://github.com/NFDI4BIOIMAGE/omero-vitessce?tab=readme-ov-file#usage) and installation (https://github.com/NFDI4BIOIMAGE/omero-vitessce?tab=readme-ov-file#installation)

Data Sources

Adapted from the full original data at: https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD1093 (10.6019/S-BIAD1093).

The original data were produced and analysed in the course of this study:

https://www.biorxiv.org/content/10.1101/2024.04.03.586404v1
DOI: 10.57996/cran.ceres-2727
title: CRIS DOI PDF test
DOI: 10.15468/dl.f57t5h
title: Occurrence Download

description: A dataset containing 22205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Psittacula krameri (Scopoli, 1769)"
 ]
}

 The dataset includes 22205 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019466-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrw6h3
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Piptadeniastrum africanum (Hook.f.) Brenan",
 "Year 1975-2025"
 ]
}

 The dataset includes 83 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019469-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdayjn
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Procambarus erythrops Relyea & Sutton, 1975"
 ]
}

 The dataset includes 43 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019468-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmr3pg
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Lophira alata Banks ex C.F.Gaertn.",
 "Year 1975-2025"
 ]
}

 The dataset's 1 records were derived from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019462-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14056091
title: Could optical coherence tomography detect monosodium urate crystal deposition at artery walls? An exploratory, phantom-based study
DOI: 10.5281/zenodo.14056092
title: Could optical coherence tomography detect monosodium urate crystal deposition at artery walls? An exploratory, phantom-based study
DOI: 10.15468/dl.g4mt95
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Viet Nam",
 "OccurrenceStatus is Present",
 "TaxonKey is Leiothrix argentauris (Hodgson, 1837)"
 ]
}

 The dataset includes 129 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019470-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.jcp.28224854
title: Supplement Number 1

description: ACCUMULATED DATA FOR THE GW 100 TEST SET
DOI: 10.60893/figshare.jcp.28224854.v1
title: Supplement Number 1

description: ACCUMULATED DATA FOR THE GW 100 TEST SET
DOI: 10.15468/dl.ydbqs7
title: Occurrence Download

description: A dataset containing 27028 species occurrences available in GBIF matching the query:
{
 "and" : [
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Artemisia vulgaris L."
 ]
}

 The dataset includes 27028 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019472-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmhxyt
title: Occurrence Download

description: A dataset containing 1750444 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Magnoliopsida",
 "Country is New Zealand",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1750444 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019467-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xmdgey
title: Occurrence Download

description: A dataset containing 3982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ascidiacea"
 ]
}

 The dataset includes 3982 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019474-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j35zrv
title: Occurrence Download

description: A dataset containing 1308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "License is one of (CC-BY 4.0, CC0 1.0)",
 "MediaType is Image",
 "TaxonKey is Houttuynia cordata Thunb."
 ]
}

 The dataset includes 1308 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019475-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53nxz6
title: Occurrence Download

description: A dataset containing 16015 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abies concolor (Gordon) Lindl. ex Hildebr."
 ]
}

 The dataset includes 16015 records from 332 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019477-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2m2m3
title: Occurrence Download

description: A dataset containing 1731 species occurrences available in GBIF matching the query:
{
 "and" : [
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "MediaType is Image",
 "TaxonKey is Carthamus tinctorius L."
 ]
}

 The dataset includes 1731 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019478-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.72u6s7
title: Occurrence Download

description: A dataset containing 5869 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is EN",
 "OccurrenceStatus is Present",
 "TaxonKey is Chelonia mydas (Linnaeus, 1758)"
 ]
}

 The dataset includes 5869 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019480-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xcxszb
title: Occurrence Download

description: A dataset containing 5611 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abies nordmanniana (Steven) Spach"
 ]
}

 The dataset includes 5611 records from 290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019479-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkvmde
title: Occurrence Download

description: A dataset containing 20844 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acer palmatum Thunb."
 ]
}

 The dataset includes 20844 records from 470 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019483-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.