cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5459176
title: Zika-predictive-model-data.zip

description: Raw datasets used in the analysis of "Predicting primate sources of long-term Zika virus spillover infection". Han et al, 2017+.
DOI: 10.17028/rd.lboro.5459155
title: Computational Simulations of Unsteady Flow Field And Spray Impingement on a Simplified Automotive Geometry - dataset

description: The data attached consists of .dat and .plt files which can be used to reproduce the figures found in the original paper "Computational Simulations of Unsteady Flow Field and Spray Impingement on a Simplified Automotive Geometry" by Kabanovs et al. (2017), published in the Journal of Wind Engineering and Industrial Aerodynamics. It also contains .stl files of all geometries used, as well as the OpenFoam setup files. These should be sufficient to be able to reproduce the computational mesh and run the original simulations.<br>
DOI: 10.17028/rd.lboro.5459155.v1
title: Computational Simulations of Unsteady Flow Field And Spray Impingement on a Simplified Automotive Geometry - dataset

description: The data attached consists of .dat and .plt files which can be used to reproduce the figures found in the original paper "Computational Simulations of Unsteady Flow Field and Spray Impingement on a Simplified Automotive Geometry" by Kabanovs et al. (2017), published in the Journal of Wind Engineering and Industrial Aerodynamics. It also contains .stl files of all geometries used, as well as the OpenFoam setup files. These should be sufficient to be able to reproduce the computational mesh and run the original simulations.<br>
DOI: 10.6084/m9.figshare.5459146
title: Supplementary Material for: Expression Profiling of MicroRNAs in the Inner Ear of Elderly People by Real-Time PCR Quantification

description: The molecular mechanisms underlying age-related hearing loss are unknown, and currently, there is no treatment for this condition. Recent studies have shown that microRNAs (miRNAs) and age-related diseases are intimately linked, suggesting that some miRNAs may present attractive therapeutic targets. In this study, we obtained 8 human temporal bones from 8 elderly subjects at brain autopsy in order to investigate the expression profile of miRNAs in the inner ear with miRNA arrays. A mean of 478 different miRNAs were expressed in the samples, of which 348 were commonly expressed in all 8 samples. Of these, levels of 16 miRNAs significantly differed between young elderly and old elderly subjects. miRNAs, which play important roles in inner ear development, were detected in all samples, i.e., in both young and old elderly subjects, whether with or without hearing loss. Our results suggest that these miRNAs play important roles not only in development, but also in the maintenance of inner ear homeostasis.
DOI: 10.6084/m9.figshare.5459146.v1
title: Supplementary Material for: Expression Profiling of MicroRNAs in the Inner Ear of Elderly People by Real-Time PCR Quantification

description: The molecular mechanisms underlying age-related hearing loss are unknown, and currently, there is no treatment for this condition. Recent studies have shown that microRNAs (miRNAs) and age-related diseases are intimately linked, suggesting that some miRNAs may present attractive therapeutic targets. In this study, we obtained 8 human temporal bones from 8 elderly subjects at brain autopsy in order to investigate the expression profile of miRNAs in the inner ear with miRNA arrays. A mean of 478 different miRNAs were expressed in the samples, of which 348 were commonly expressed in all 8 samples. Of these, levels of 16 miRNAs significantly differed between young elderly and old elderly subjects. miRNAs, which play important roles in inner ear development, were detected in all samples, i.e., in both young and old elderly subjects, whether with or without hearing loss. Our results suggest that these miRNAs play important roles not only in development, but also in the maintenance of inner ear homeostasis.
DOI: 10.6084/m9.figshare.5459536.v14
title: On the Dark World of Richard Dawkins

description: In The Selfish Gene, The Blind Watchmaker and The God Delusion, Richard Dawkins expresses what is undoubtedly the mainstream view of the origin of the species. An outgrowth of atomism, materialism, and the "scientific" revolution, the epistemological and ethical implications of the story of origins he champions ("Once upon a time there was a dark land in which might was the only right and in which no one lived happily after.") has given the world Nietzsche, Adolf Hitler and the Nazis, the Holocaust, the moral bankruptcy of modern America and their representative -the man most likely to start World War III - Donald Trump. And of course it has given us Dawkins himself. Here we focus on a pair of necessary conditions of the reality of Dawkins' brutal, mindless, pitiless, world and show that these conditions cannot be met.
DOI: 10.6084/m9.figshare.5458927
title: Orthrozanclus elongata NIGPAS164893A - SEM

description: Backscatter electron microscopy of Orthrozanclus elongata, NIGPAS 164893
DOI: 10.6084/m9.figshare.5458924
title: Orthrozanclus elongata NIGPAS164893B - SEM

description: Backscatter electron images of Orthrozanclus elongata NIGPAS164893b
DOI: 10.6084/m9.figshare.5458927.v1
title: Orthrozanclus elongata NIGPAS164893A - SEM

description: Backscatter electron microscopy of Orthrozanclus elongata, NIGPAS 164893
DOI: 10.6084/m9.figshare.5458924.v1
title: Orthrozanclus elongata NIGPAS164893B - SEM

description: Backscatter electron images of Orthrozanclus elongata NIGPAS164893b
DOI: 10.6084/m9.figshare.5458903
title: Orthrozanclus elongata NIGPAS164893A - Elemental map

description: Elemental maps correspond to region boxed in reference SEM.
DOI: 10.6084/m9.figshare.5458903.v1
title: Orthrozanclus elongata NIGPAS164893A - Elemental map

description: Elemental maps correspond to region boxed in reference SEM.
DOI: 10.6084/m9.figshare.5458915
title: Convection in an internally cooled fluid layer heated from below

description: Convection in a homogeneously cooled layer heated by a fixed temperature at the lower boundary is investigated numerically for various Rayleigh numbers Ra and Prandtl numbers Pr. The upper boundary is kept insulating. Large aspect ratios up to 20 are used in order to study the large scale pattern of convection. The problem is mathematically identical with the problem of a homogeneously heated convection layer cooled from above. The mean temperature difference between the two boundaries decreases in proportion to Ra-0.216.
DOI: 10.6084/m9.figshare.5458882
title: Presentation-GA4GH-ContainersWorkflowsTaskTeam-Oct2017

description: An introduction to the Reproducible Document Stack project with eLife and Substance.<br>More information on the project is at https://elifesciences.org/labs/7dbeb390/reproducible-document-stack-supporting-the-next-generation-research-article.
DOI: 10.6084/m9.figshare.5458915.v2
title: Convection in an internally cooled fluid layer heated from below

description: Convection in a homogeneously cooled layer heated by a fixed temperature at the lower boundary is investigated numerically for various Rayleigh numbers Ra and Prandtl numbers Pr. The upper boundary is kept insulating. Large aspect ratios up to 20 are used in order to study the large scale pattern of convection. The problem is mathematically identical with the problem of a homogeneously heated convection layer cooled from above. The mean temperature difference between the two boundaries decreases in proportion to Ra-0.216.
DOI: 10.6084/m9.figshare.5458915.v1
title: Convection in an internally cooled fluid layer heated from below

description: Convection in a homogeneously cooled layer heated by a fixed temperature at the lower boundary is investigated numerically for various Rayleigh numbers Ra and Prandtl numbers Pr. The upper boundary is kept insulating. Large aspect ratios up to 20 are used in order to study the large scale pattern of convection. The problem is mathematically identical with the problem of a homogeneously heated convection layer cooled from above. The mean temperature difference between the two boundaries decreases in proportion to Ra-0.216.
DOI: 10.6084/m9.figshare.5458834
title: Predicting the bioconcentration factor through a conformation-independent QSPR study

description: The ANTARES dataset is a large collection of known and verified experimental bioconcentration factor data, involving 851 highly heterogeneous compounds from which 159 are pesticides. The BCF ANTARES data were used to derive a conformation-independent QSPR model. A large set of 27,017 molecular descriptors was explored, with the main intention of capturing the most relevant structural characteristics affecting the studied property. The structural descriptors were derived with different freeware tools, such as PaDEL, Epi Suite, CORAL, Mold<sup>2</sup>, RECON, and QuBiLs-MAS, and so it was interesting to find out the way that the different descriptor tools complemented each other in order to improve the statistical quality of the established QSPR. The best multivariable linear regression models were found with the Replacement Method variable sub-set selection technique. The proposed QSPR model improves previous reported models of the bioconcentration factor in the present dataset.
DOI: 10.6084/m9.figshare.5458834.v1
title: Predicting the bioconcentration factor through a conformation-independent QSPR study

description: The ANTARES dataset is a large collection of known and verified experimental bioconcentration factor data, involving 851 highly heterogeneous compounds from which 159 are pesticides. The BCF ANTARES data were used to derive a conformation-independent QSPR model. A large set of 27,017 molecular descriptors was explored, with the main intention of capturing the most relevant structural characteristics affecting the studied property. The structural descriptors were derived with different freeware tools, such as PaDEL, Epi Suite, CORAL, Mold<sup>2</sup>, RECON, and QuBiLs-MAS, and so it was interesting to find out the way that the different descriptor tools complemented each other in order to improve the statistical quality of the established QSPR. The best multivariable linear regression models were found with the Replacement Method variable sub-set selection technique. The proposed QSPR model improves previous reported models of the bioconcentration factor in the present dataset.
DOI: 10.6084/m9.figshare.5458882.v3
title: Presentation-GA4GH-ContainersWorkflowsTaskTeam-Oct2017

description: An introduction to the Reproducible Document Stack project with eLife and Substance.<br>More information on the project is at https://elifesciences.org/labs/7dbeb390/reproducible-document-stack-supporting-the-next-generation-research-article.
DOI: 10.6084/m9.figshare.5458696
title: Dataset of aperture field created by dissolution experiment of fractured granite at 350 dgreeC

description: Data set of aperture fields which evolved during dissolution of fractured granite. Each aperture in a fracture is measured by X-ray CT (voxel size of 10 micron meters). The unit of data is micron meters.<br>Run ARun_A_initial.txt : Initial aperture distributionRun_A_after_A-1.txt : After stage A-1 (room T flow)Run_A_after_A-2.txt : After stage A-2 (350C batch)Run_A_after_A-3.txt : After stage A-3 (350 C flow)<br>Run BRun_B_initial.txt : Initial aperture distributionRun_B_after_B-1.txt : After stage B-1 (room T flow)Run_B_after_B-2.txt : After stage B-2 (350 C flow)
DOI: 10.6084/m9.figshare.5458675
title: Question times from a conference

description: Length of questions (in seconds) asked at the Eighth Peer Review Congress in Chicago, September 2017.<br>
DOI: 10.6084/m9.figshare.5458675.v1
title: Question times from a conference

description: Length of questions (in seconds) asked at the Eighth Peer Review Congress in Chicago, September 2017.<br>
DOI: 10.6084/m9.figshare.5458588
title: Dataset for: Ejaculate evolution in external fertilizers: influenced by sperm competition or sperm limitation?

description: The evolution of sperm quality and quantity is shaped by various selective processes, with sperm competition generally considered the primary selective agent. Particularly in external fertilizers, however, sperm limitation through gamete dispersal can also influence gamete investments, but empirical data examining this effect are limited. Here, we studied the relative importance of sperm competition and the spawning conditions in explaining the macroevolutionary patterns of sperm size and number within two taxa with external fertilization but differences in their reproductive biology. In frogs, sperm swim slowly but for up to hours as they penetrate the gelatinous egg coating, whereas fish sperm typically swim fast, are very short-lived (seconds to minutes), and often face a relatively higher risk of being moved away from the ova by currents. Our phylogenetic models and path analyses revealed different trajectories of ejaculate evolution in these two taxa. Sperm size and number responded primarily to variation in sperm competition in the anurans, but more strongly to egg number and water turbulence in the fishes. Whereas the results across anurans align with the general expectation that sexual selection is the main driver of ejaculate evolution, our findings across the fishes suggest that sperm limitation has been underappreciated.
DOI: 10.6084/m9.figshare.5458561
title: "Features of mapping a single chromosome by different aligners, revealed by a novel quality assessment method."

description: Data used in publication:<b>ABED</b>.zip: directory containing model and all aligners sequences in BED format<br><b>BAM</b>.zip: directory containing model and all aligners sequences in BAM format, <i>case3</i> (mapping of reads from a whole genome to a reference genome)<br><b>BAM</b>.tar.gz: the same as BAM.zip<br><b>ReadMe</b>.txt: this text + file naming convention<br><b>ProcessedDataAlign</b>.zip: 4 tables containing the results of calculations and graphs<br><br>
DOI: 10.6084/m9.figshare.5458561.v2
title: "Features of mapping a single chromosome by different aligners, revealed by a novel quality assessment method."

description: Data used in publication:<b>ABED</b>.zip: directory containing model and all aligners sequences in BED format<br><b>BAM</b>.zip: directory containing model and all aligners sequences in BAM format, <i>case3</i> (mapping of reads from a whole genome to a reference genome)<br><b>BAM</b>.tar.gz: the same as BAM.zip<br><b>ReadMe</b>.txt: this text + file naming convention<br><b>ProcessedDataAlign</b>.zip: 4 tables containing the results of calculations and graphs<br><br>
DOI: 10.6084/m9.figshare.5458528
title: Brian Patrick's New Zealand moth observations 1970–2014

description: This is the full copy of the current state (as of 30 Sept. 2017) of our project digitising all of the paper notes of New Zealand Lepidopterist Brian Patrick. Since 1970, Brian has kept lists of every moth species that has visited his light traps. He has done light trapping at thousands of sites all through New Zealand, especially in the south.<br><br>We are preparing publications from this work now. If you find this data useful for your research, please consider including us as authors.<br><br>The cleaned core of this data is publicly available at http://naturewatch.org.nz/projects/brian-patrick-s-moths-and-butterflies-of-new-zealand<br><br>The dataset here is a CSV export of our full database. It includes observations with taxonomic and geographic issues that are still to be resolved. We will intermittently update this as the dataset is polished and expanded.<br>
DOI: 10.6084/m9.figshare.5458561.v1
title: "Features of mapping a single chromosome by different aligners, revealed by a novel quality assessment method."

description: Data used in publication:<b>ABED</b>.zip: directory containing model and all aligners sequences in BED format<br><b>BAM</b>.zip: directory containing model and all aligners sequences in BAM format, <i>case3</i> (mapping of reads from a whole genome to a reference genome)<br><b>ReadMe</b>.txt: this text + file naming convention<br><b>ProcessedDataAlign</b>.zip: 4 tables containing the results of calculations and graphs<br><br>
DOI: 10.6084/m9.figshare.5458528.v1
title: Brian Patrick's New Zealand moth observations 1970–2014

description: This is the full copy of the current state (as of 30 Sept. 2017) of our project digitising all of the paper notes of New Zealand Lepidopterist Brian Patrick. Since 1970, Brian has kept lists of every moth species that has visited his light traps. He has done light trapping at thousands of sites all through New Zealand, especially in the south.<br><br>We are preparing publications from this work now. If you find this data useful for your research, please consider including us as authors.<br><br>The cleaned core of this data is publicly available at http://naturewatch.org.nz/projects/brian-patrick-s-moths-and-butterflies-of-new-zealand<br><br>The dataset here is a CSV export of our full database. It includes observations with taxonomic and geographic issues that are still to be resolved. We will intermittently update this as the dataset is polished and expanded.<br>
DOI: 10.6084/m9.figshare.5458429
title: Dataset.xlsx

description: Dataset For Multi-Carrier Energy System Energy Flow
DOI: 10.6084/m9.figshare.5458342
title: Tefé Bunyavirus S segment.fasta

description: FASTA file containing nine sequences of the S segment from Bunyavirus humans samples detected in Tefé, Amazonas, Brazil.
DOI: 10.6084/m9.figshare.5458240
title: Micro CT of Bathymodiolus childressi

description: Micro computed tomography recorded image stack of <i>Bathymodiolus childressi</i><br>
DOI: 10.6084/m9.figshare.5458234
title: Micro CT of Bathymodiolus azoricus

description: Micro computed tomography recorded image stack of <i>Bathymodiolus azoricus </i><br>
DOI: 10.6084/m9.figshare.5458240.v1
title: Micro CT of Bathymodiolus childressi

description: Micro computed tomography recorded image stack of <i>Bathymodiolus childressi</i><br>
DOI: 10.6084/m9.figshare.5458186
title: Supplementary Tables from Trunk dental tissue evolved independently from underlying dermal bony plates but is associated with surface bones in living odontode-bearing catfish

description: Details on the samples, primers, and time-calibrations used, and the morphological matrices
DOI: 10.6084/m9.figshare.5458144
title: PTEG-1, PP and N-DMBI atomistic force fields

description: GROMOS 53A6 based atomistic force field for the fullerene derivatives PTEG-1 and PP, and the small organic molecule used as dopant N-DMBI.<br>The provided files are in GROMACS format (see GROMACS manual in case of need).<br>For details on the atomistic force fields, please see the associated publication (and please cite it if you find these files useful for your work):<b><br></b><b>Enhancing doping efficiency by improving host-dopant miscibility for fullerene-based n-type thermoelectrics </b>L. Qiu, J. Liu, R. Alessandri, X. Qiu, M. Koopmans, R.W.A. Havenith, S.J. Marrink, R.C. Chiechi, L.J.A. Koster, J.C. Hummelen<i>Journal of Material Chemistry A</i>, 2017, DOI: 10.1039/C7TA06609K
DOI: 10.6084/m9.figshare.5458186.v1
title: Supplementary Tables from Trunk dental tissue evolved independently from underlying dermal bony plates but is associated with surface bones in living odontode-bearing catfish

description: Details on the samples, primers, and time-calibrations used, and the morphological matrices
DOI: 10.6084/m9.figshare.5458135
title: S1 Dataset.rar

description: Compared malaria data sets during rainfall seasons in theAlmanagil Locality in the year of flooding (2013) with those of corresponding rainfall seasons of previous two non-floodyears (2011 and 2012).
DOI: 10.6084/m9.figshare.11421243.v1
title: The Impact of Working Overtime or Multiple Jobs in Emergency Medical Services

description: <b>Background</b>: EMS professionals frequently work more than a standard 40-hour work week. For some EMS professionals, working overtime or multiple jobs may be necessary to make ends meet. Our objective was to evaluate the association between job satisfaction, intention to leave EMS, and financial dependence on overtime or working multiple jobs. <b>Methods</b>: We conducted a cross-sectional analysis of nationally-certified EMS professionals who completed an online questionnaire after submitting their recertification application (22,626/101,363, response rate = 22%) between October 2017 – May 2018. Items included dependence on additional work, satisfaction with job, and intentions of leaving the profession. Multivariable logistic regression models were used to describe the association between dependence on additional work, and job satisfaction and intention to leave EMS within 1 year and 5 years, controlling for age, sex, minority status, agency type, employment status, and urbanicity. <b>Results</b>: A total of 18,285 respondents were included in the analysis. The majority of EMS professionals (75%) worked over 40 hours per week. Most respondents (71%) were dependent on overtime or multiple jobs to make ends meet. Those who were dependent on extra work had higher odds of being dissatisfied with their job (aOR 1.92, 95% CI:1.64–2.44, and higher odds of intentions to leave EMS within 1 year and 5 years respectively (aOR 1.32, 95%CI:1.14–1.54; aOR 1.16, 95%CI:1.07–1.25). <b>Conclusion</b>: Many EMS professionals depend on additional work to make a living. Financial dependence was associated with increased odds of workforce-reducing factors, including job satisfaction and intention of leaving. This can lead to poor individual outcomes such as stress and burnout, as well as to turnover within the workforce, thus reducing the number of individuals available to provide high quality emergency care.
DOI: 10.6084/m9.figshare.11541765
title: A Statewide Analysis of EMS’ Pediatric Transport Destination Decisions

description: <b>Introduction:</b> Deciding where to transport a patient is a key decision made by emergency medical services (EMS), particularly for children because pediatric hospital resources are regionalized. Since evidence-based guidelines for pediatric transport destinations are being developed, the purpose of this study was to use a large statewide EMS database to describe current patterns of EMS providers’ transport destination decisions for pediatric patients. <b>Methods:</b> This is a retrospective study of pediatric transports from 2011-2016 in EMS Tracking and Reporting System (EMSTARS), Florida’s statewide EMS database. We included patients greater than 1 day and less than or equal to 18 years who were primary EMS scene transports. Our primary outcome variable was ‘reason for choosing destination.’ We performed descriptive and comparative analysis between closest facility and all other ‘reason for choosing destination’ choices. We used geospatial analysis to examine destination choice in urban and rural counties. <b>Results:</b> Our final study sample was 446,274, and 48.2% of patients had closest facility as their ‘reason for choosing destination.’ The next largest category was patient/family choice (154,035 patients, 35.7%). Closest facility patients were older (median age 12 versus 10 years, p <b>Conclusions:</b> This large, statewide study describes EMS’ reason for choosing destination for pediatric patients. We found that just under half of patients were documented as closest facility, and over one-third as patient/family choice. Significant differences in destination reasons were noted for rural versus urban counties. This study can help those currently developing pediatric EMS destination guidelines by revealing a high proportion of patient/family choice and identifying conditions with high proportions of destination reasons other than closest facility.