cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7857260.v1
title: dataset from "The distinct phenotypic signatures of dispersal and stress in an arthropod model: from physiology to life history "

description: The dataset contains four data files:<br><br>(1)"life history.txt" : contains informations on various life history traits expressed by female mites let on leaves (bean or tomato) for 10 days after a dispersal test<br>One female founder per leaf; one leaf per row; 140 rows<br><br>(2)"metabolite.txt": contains informations on metabolite concentrations (obtained by GC-MS) of female mites let on leaves (bean or tomato) for 24h after a dispersal test<br>50 females per leaf; one leaf per row; 20 rows<br><br>(3)"dispersal rate.txt": proportion of dispersers effectively observed for 10 dispersal bridges<br><br>(4)"molecular categories.txt" : contains full names of tested metabolites, and their assignation to key molecular categories<br><br>######## FILE CONTENTS<br><br>#### Columns common to files (1) and (2)<br><br>Disp: dispersal status (binary, "Disperser" or "Resident". See manuscript for details on assignation)<br>Host: host plant after the dispersal test (binary, "Bean" or "Tomato")<br><br>#### File (1) only<br><br>Length_mm: length of the focal female, in mm (from tip of chelicerae to end of body)<br>eaten_mm2: total area of chlorotic damage observed after 24h<br>Neggs24h: number of eggs laid in the first 24h by the focal female<br>EGGS10d: number of eggs present on the leaf after 10 days<br>Nimmatures10d: number of immatures (excluding eggs) present on the leaf after 10 days<br>AFEMA10d: number of adult females present on the leaf after 10 days<br>AMALES10d: number of adult males present on the leaf after 10 days<br>N_all_mites10d = EGGS10d + Nimmatures10d + AFEMA10d + AMALES10d<br>mean_egg_vol: mean volume of eggs laid by the focal female in the first 24h (in micrometer^3)<br><br>#### File (2) only<br><br>ID: unique replicate identifier (first letter denote host plant, second letter dispersal status)<br>Fresh_mass_mg: mass of the 50 sampled mites, obtained by substracting empty tube mass to the mass of the tube + sample<br>Columns from "Lactic_acid" to "trehalose": metabolite concentrations (in nmol per mg of mite fresh mass, 37 metabolites)<br><br>### File (3) only<br><br>Bridge: replicate ID<br>Ndispersers: number of individuals (out of 100) that successfully crossed the dispersal bridge<br><br>### File (4) only<br><br>Column: legacy variable for quality controls; order of the corresponding molecule in File (2)<br>Molecule: Molecule shortened ID as in file (2)<br>Full_name: The corresponding full, unabbreviated name of the molecule<br>Category: Molecular category based on the KEGG database; see manuscript for details<br><br>
DOI: 10.6084/m9.figshare.7857245.v1
title: Use of the index of ideality of correlation to improve predictive potential for biochemical endpoints

description: The CORAL software is a tool to build up quantitative structure-property/activity relationships (QSPRs/QSARs). The project of updated version of the CORAL software is discussed in terms of practical applications for building up various models. The updating is the possibility to improve the predictive potential of models using the so-called Index of Ideality of Correlation (<i>IIC</i>) as a criterion of the predictive potential for QSPR/QSAR models. Efficacy of the <i>IIC</i> is examined with three examples of building up QSARs: (i) models for anticancer activity; (ii) models for mutagenicity; and (iii) models for toxicity of psychotropic drugs. The validation of these models has been carried out with several splits into the training, invisible training, calibration, and validation sets. The ability of <i>IIC</i> to be an indicator of predictive potential of QSAR models is confirmed. The updated version of the CORAL software (CORALSEA-2017, http://www.insilico.eu/coral) is available on the Internet.
DOI: 10.25385/zuyd.7857251.v1
title: Interprofessional Education and Collaboration (IPE/C)

description: Our future health professionals need to function in a changing healthcare environment. We consider it as necessary to prepare them to handle the challenges they encounter adequately. One solution is interprofessional education and collaboration. Healthcare professionals need to be able to collaborate interprofessionally to provide optimal care to patients and families. The patient and his or her need for help and support should be central in the caring process and not professionals. This is the reason why the Faculty of Health at Zuyd University of Applied Sciences, in collaboration with the research centre Autonomy and participation of chronically ill people together take on the challenge to educate students interprofessionally. The following bachelor programmes participate in IPE/C: occupational therapy, physical therapy, speech and language therapy, arts therapy, nursing, midwifery and biomedical sciences. Also, we seek collaboration with other faculties, such as Social Work. Next to their profession-specific competencies we train our students in interprofessional competencies. IPE/C is directed that students from different educational programmes learning about, from and with each other. The World Health Organisations (2010) defines IPE/C as: ‘Interprofessional education occurs when two or more professionals learn about, from, and with each other to enable collaboration and improve health outcomes.’
DOI: 10.6084/m9.figshare.7857197
title: Scripts

description: Dataset description and code scripts for the paper
DOI: 10.25385/zuyd.7857200.v1
title: Interprofessioneel Opleiden en Samenwerken (IPOS)

description: Om onze toekomstige zorgprofessionals optimaal te laten functioneren in een sterk veranderende gezondheidszorg, is het noodzakelijk om hen hierop voor te bereiden. Daarom is interprofessioneel opleiden broodnodig. Zorgprofessionals moeten goed in staat zijn om adequaat met elkaar samen te werken in dienst van een optimale zorgverlening voor de cliënt. De cliënt met zijn of haar hulpvraag dient in het zorgproces centraal te staan en niet de professional. Daarom gaat de faculteit Gezondheidszorg, in samenwerking met het Lectoraat Autonomie en Participatie van chronisch zieken, de uitdaging aan om al haar studenten interprofessioneel op te leiden. Het gaat om de bachelor opleidingen ergotherapie, fysiotherapie, logopedie, creatieve therapie, verpleegkunde, verloskunde en biometrie. Ook is samenwerking gezocht met andere faculteiten zoals Social Studies. Naast hun opleidingsspecifieke competenties verwerven de Zuyd-studenten ook interprofessionele competenties. Bij interprofessioneel opleiden leren (toekomstige) professionals over, van en met elkaar. De Wereld Gezondheidsorganisatie (2010) definieert dit als volgt: ‘Interprofessional education occurs when two or more professionals learn about, from, and with each other to enable collaboration and improve health outcomes.’
DOI: 10.6084/m9.figshare.7857197.v1
title: Scripts

description: Dataset description and code scripts for the paper
DOI: 10.6084/m9.figshare.7857185
title: STRING database ver.10.5 archive 9606 data sets

description: This data collection contains the data sets related to human (9606) that were previously deposed as separate datasets in STRING ver.10.5 before changing the download files structure with release of ver.11.0.<br>
DOI: 10.6084/m9.figshare.7857050
title: Dataset

description: The data consist of several items:1. PePeNDatabase is a database containing PE- and PEN- word whose multiple semantics roles2. PepenInflectionSingle is a database containing PE- and PEN- words which have inflection in it and single semantic role3. PepenSingleOccurence_NoMorphVar is a database containing PE- and PEN- words which have no inflection in it and single semantic role4. PepenMeberSimple is a database containing words with PE- and PEN- prefixes. This database also includes the base of MEN- prefix, BER- prefix, and monomorphemic words 5. AllVerbs is a database containing Indonesian verbs6. MeBer is a database containing verbs which have MEN- and BER- prefixes7. SimpleWords is a database containing monomorphemic words in the corpus
DOI: 10.6084/m9.figshare.7857002
title: Data.zip

description: The administrative division data of Morocco, even if available on the net [1] in the form of a shapefile, lacks consistency and a certain level of details needed for the creation of a district repository. Taking for instance one of the largest regions of Morocco, Grand Casablanca, where the economical capital of the country is located, still there’s no data , on the official website of its territorial administrative division[2], neither a detailed table nor an editable map.After updating the Moroccan administrative division shapefile to be conformed to the administrative repartition of communes over the prefectures and provinces according to the 2015 general monograph of the Region Grand Casablanca [3]. We finally were able, using QGIS, to geocode the gathered districts over the updated shapefile and extract the data creating the Grand Casablanca District repository.Therefore, the raw data is gathered in one table GC-repository containing 402 records of the following fields detailed in the table below: District, District_CP, Commune, Type_com, Prefecture/Province, PR_ CP, Region. The second output is the shapefile of 205 Ko that generated the table. All is detailed in the data.zip file
DOI: 10.6084/m9.figshare.7857011
title: Vagina.fastq.gz

description: 在本研究中招募了总共22名GBS阳性女性和44名匹配GBS阴性女性。该阴道 使用基于16S rRNA基因的焦磷酸测序分析微生物组组成。然后评估微生物组的多样性和变异。
DOI: 10.6084/m9.figshare.7857011.v1
title: Vagina.fastq.gz

description: 在本研究中招募了总共22名GBS阳性女性和44名匹配GBS阴性女性。该阴道 使用基于16S rRNA基因的焦磷酸测序分析微生物组组成。然后评估微生物组的多样性和变异。
DOI: 10.6084/m9.figshare.7856990
title: Geostatistical analysis of Malawi’s changing malaria transmission from 2010 to 2017.

description: The prevalence of malaria infection in time and space provides important information on the likely sub-national epidemiology of malaria burdens and how this changes following intervention. <br>To present empirical evidence on malaria transmission changes in Malawi, we used data from <i>Plasmodium falciparum </i>parasite prevalence (<i>Pf</i>PR) surveys undertaken in Malawi between 2000 and 2017. These data were assembled as part of intensive search lasting over 21 years.
DOI: 10.6084/m9.figshare.7856909
title: SLA-data eye tracker

description: Horizontal sound localization gaze data from 8 adult normal hearing (N0) and two degrees of simulated unilateral hearing loss (N1 and N2) at 20 Hz. 1.6 s of sound-only period before visual stimulus is reintroduced. Method further described in: Asp, F., Olofsson, Å., & Berninger, E. (2016). Corneal-Reflection Eye-Tracking Technique for the Assessment of Horizontal Sound Localization Accuracy from 6 Months of Age: <i>Ear and Hearing</i>, <i>37</i>(2), e104–e118. https://doi.org/10.1097/AUD.0000000000000235
DOI: 10.6084/m9.figshare.7856990.v2
title: Geostatistical analysis of Malawi’s changing malaria transmission from 2010 to 2017.

description: The prevalence of malaria infection in time and space provides important information on the likely sub-national epidemiology of malaria burdens and how this changes following intervention. <br>To present empirical evidence on malaria transmission changes in Malawi, we used data from <i>Plasmodium falciparum </i>parasite prevalence (<i>Pf</i>PR) surveys undertaken in Malawi between 2000 and 2017. These data were assembled as part of intensive search lasting over 21 years.
DOI: 10.6084/m9.figshare.7856864
title: Kareniaceae SSU rRNA and 13 HGT candidates phylogenies (newick format)

description: Phylogenetic reconstructions of Kareniaceae SSU rRNA and of 13 candidates for horizontal gene transfer (HGT) in newick format (*.tre), corresponding to Fig. 1 and Fig. S1, respectively. The SSU rRNA tree was inferred with IQ-TREE using ModelFinder (selected model according to the Bayesian Information Criterion: TIM2+R5) while branch support was assessed with 100 bootstrap replicates.Trees for the 13 HGT candidates were inferred using IQ-TREE, using the best model identified for each alignment separately, node support was calculated using 1000 ultrafast bootstrap (UFBoot) replicates. Filenames for HGT phylogenies contain, in that order, the query ID, the name of the gene, the e-value used for parsing the BLASTP result (if deviating from the default of ≤1e-25 = E25) and the model used for tree reconstruction.
DOI: 10.6084/m9.figshare.7856909.v1
title: SLA-data eye tracker

description: Horizontal sound localization gaze data from 8 adult normal hearing (N0) and two degrees of simulated unilateral hearing loss (N1 and N2) at 20 Hz. 1.6 s of sound-only period before visual stimulus is reintroduced. Method further described in: Asp, F., Olofsson, Å., & Berninger, E. (2016). Corneal-Reflection Eye-Tracking Technique for the Assessment of Horizontal Sound Localization Accuracy from 6 Months of Age: <i>Ear and Hearing</i>, <i>37</i>(2), e104–e118. https://doi.org/10.1097/AUD.0000000000000235
DOI: 10.6084/m9.figshare.7856990.v1
title: Geostatistical analysis of Malawi’s changing malaria transmission from 2010 to 2017.

description: The prevalence of malaria infection in time and space provides important information on the likely sub-national epidemiology of malaria burdens and how this changes following intervention. <br>To present empirical evidence on malaria transmission changes in Malawi, we used data from <i>Plasmodium falciparum </i>parasite prevalence (<i>Pf</i>PR) surveys undertaken in Malawi between 2000 and 2017. These data were assembled as part of intensive search lasting over 21 years.
DOI: 10.6084/m9.figshare.7856864.v2
title: Kareniaceae SSU rRNA and 13 HGT candidates phylogenies (newick format)

description: Phylogenetic reconstructions of Kareniaceae SSU rRNA and of 13 candidates for horizontal gene transfer (HGT) in newick format (*.tre), corresponding to Fig. 1 and Fig. S1, respectively. The SSU rRNA tree was inferred with IQ-TREE using ModelFinder (selected model according to the Bayesian Information Criterion: TIM2+R5) while branch support was assessed with 100 bootstrap replicates.Trees for the 13 HGT candidates were inferred using IQ-TREE, using the best model identified for each alignment separately, node support was calculated using 1000 ultrafast bootstrap (UFBoot) replicates. Filenames for HGT phylogenies contain, in that order, the query ID, the name of the gene, the e-value used for parsing the BLASTP result (if deviating from the default of ≤1e-25 = E25) and the model used for tree reconstruction.
DOI: 10.6084/m9.figshare.7856825
title: behavioral and biochemical data

description: membranes and measurements.
DOI: 10.6084/m9.figshare.7856828
title: Safety and Oncological Outcomes of Laparoscopic NOSE Surgery Compared with Conventional Laparoscopic Surgery for Colorectal Diseases: A Meta-Analysis

description: This is a data of Meta-analysis from previous studies
DOI: 10.6084/m9.figshare.7856864.v1
title: Kareniaceae SSU rRNA and 13 HGT candidates phylogenies (newick format)

description: Phylogenetic reconstructions of Kareniaceae SSU rRNA and of 13 candidates for horizontal gene transfer (HGT) in newick format (*.tre), corresponding to Fig. 1 and Fig. S1, respectively. The SSU rRNA tree was inferred with IQ-TREE using ModelFinder (selected model according to the Bayesian Information Criterion: TIM2+R5) while branch support was assessed with 100 bootstrap replicates.Trees for the 13 HGT candidates were inferred using IQ-TREE, using the best model identified for each alignment separately, node support was calculated using 1000 ultrafast bootstrap (UFBoot) replicates. Filenames for HGT phylogenies contain, in that order, the query ID, the name of the gene, the e-value used for parsing the BLASTP result (if deviating from the default of ≤1e-25 = E25) and the model used for tree reconstruction.
DOI: 10.6084/m9.figshare.7856825.v1
title: behavioral and biochemical data

description: membranes and measurements.
DOI: 10.6084/m9.figshare.7856828.v1
title: Safety and Oncological Outcomes of Laparoscopic NOSE Surgery Compared with Conventional Laparoscopic Surgery for Colorectal Diseases: A Meta-Analysis

description: This is a data of Meta-analysis from previous studies
DOI: 10.6084/m9.figshare.7856828.v2
title: Safety and Oncological Outcomes of Laparoscopic NOSE Surgery Compared with Conventional Laparoscopic Surgery for Colorectal Diseases: A Meta-Analysis

description: This is a data of Meta-analysis from previous studies
DOI: 10.6084/m9.figshare.7856828.v3
title: Safety and Oncological Outcomes of Laparoscopic NOSE Surgery Compared with Conventional Laparoscopic Surgery for Colorectal Diseases: A Meta-Analysis

description: This is a data of Meta-analysis from previous studies
DOI: 10.6084/m9.figshare.7856828.v5
title: Safety and Oncological Outcomes of Laparoscopic NOSE Surgery Compared with Conventional Laparoscopic Surgery for Colorectal Diseases: A Meta-Analysis

description: This is a data of Meta-analysis from previous studies
DOI: 10.6084/m9.figshare.7856738
title: Muscle spindle reinnervation using transplanted embryonic dorsal root ganglion cells after peripheral nerve transection in rats

description: <br> <br><b>Abstract</b> <br><b>Objectives:</b><b> </b>Muscle spindles are proprioceptive receptors in the skeletal muscle. Peripheral nerve injury results in a decreased number of muscle spindles and their morphologic deterioration. However, the muscle spindles recover when skeletal muscles are reinnervated with surgical procedures, such as nerve suture or nerve transfer. Morphological changes in muscle spindles by cell-transplantation procedure have not been reported so far. Therefore, we hypothesized that transplantation of embryonic sensory neurons may improve sensory neuron in the skeletal muscle and reinnervate the muscle spindles. <br><b>Materials and Methods: </b>We collected sensory neurons from dorsal root ganglions of 14-day-old rat embryos and prepared a rat model of peripheral nerve injury, by performing sciatic nerve transection and allowing for a period of one week before which we performed the cell transplantations. Six months later, the morphological changes of muscle spindles in cell transplantation group was compared with naïve control and surgical control groups. <br><b>Results: </b>Our results demonstrated that transplantation of embryonic dorsal root ganglion cells induced regeneration of sensory nerve fiber and reinnervation of muscle spindles in the skeletal muscle. Moreover, Calbindin D-28k immunoreactivity in intrafusal muscle fibers was maintained for six months after denervation in the cell transplantation group, whereas it disappeared in the surgical control group. <b>Conclusions: </b>Cell transplantation therapies could serve as selective targets to modulate mechanosensory function in the skeletal muscle. <br><em> </em>
DOI: 10.6084/m9.figshare.7856738.v1
title: Muscle spindle reinnervation using transplanted embryonic dorsal root ganglion cells after peripheral nerve transection in rats

description: <br> <br><b>Abstract</b> <br><b>Objectives:</b><b> </b>Muscle spindles are proprioceptive receptors in the skeletal muscle. Peripheral nerve injury results in a decreased number of muscle spindles and their morphologic deterioration. However, the muscle spindles recover when skeletal muscles are reinnervated with surgical procedures, such as nerve suture or nerve transfer. Morphological changes in muscle spindles by cell-transplantation procedure have not been reported so far. Therefore, we hypothesized that transplantation of embryonic sensory neurons may improve sensory neuron in the skeletal muscle and reinnervate the muscle spindles. <br><b>Materials and Methods: </b>We collected sensory neurons from dorsal root ganglions of 14-day-old rat embryos and prepared a rat model of peripheral nerve injury, by performing sciatic nerve transection and allowing for a period of one week before which we performed the cell transplantations. Six months later, the morphological changes of muscle spindles in cell transplantation group was compared with naïve control and surgical control groups. <br><b>Results: </b>Our results demonstrated that transplantation of embryonic dorsal root ganglion cells induced regeneration of sensory nerve fiber and reinnervation of muscle spindles in the skeletal muscle. Moreover, Calbindin D-28k immunoreactivity in intrafusal muscle fibers was maintained for six months after denervation in the cell transplantation group, whereas it disappeared in the surgical control group. <b>Conclusions: </b>Cell transplantation therapies could serve as selective targets to modulate mechanosensory function in the skeletal muscle. <br><em> </em>
DOI: 10.6084/m9.figshare.7856717
title: De novo transcriptome assembly of two fern Microsorum species identifies enzymes required for two upstream pathways of phytoecdysteroids

description: <i>De novo</i> transcriptome assembly of two Microsorum fern species
DOI: 10.6084/m9.figshare.7856720
title: Characteristics of platelet count and size and diagnostic accuracy of mean platelet volume in patients with venous thromboembolism. A systematic review and meta-analysis

description: The purpose of this study was to evaluate the association between platelet (PLT) count and mean platelet volume (MPV) and venous thromboembolism (VTE). Thus, this study reviewed and performed a quantitative synthesis on data from the literature. This meta-analysis was conducted in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. 18 studies were included in this paper. A random-effect meta-analysis was conducted for the assessment of heterogeneity using thrombosis place, type of analyzer, type of anticoagulant and incubation time of samples as covariates. A mixed-effect meta-regression was performed based on the subgroup for the whole samples using thrombosis place and method of measurement as moderators for MPV and PLT, respectively. The cumulative estimates and 95% confidence interval (95%CI) of specificity, sensitivity, area under the receiver operator characteristic curve (AUC) and diagnostic odds ratio (DOR) for MPV were calculated using a random effect model. The quality assessments were evaluated according to the quality assessment and diagnostic accuracy tool-2 (QUADAS-2). The primary outcome was the occurrence of VTE. Secondary outcomes included PLT and MPV. Patient with deep vein thrombosis is likely to have a higher value of MPV than control group (<i>P</i> P