cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8106246
title: 16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-13: model 12292 to 13292)

description: <em><strong>16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-13: model 12292 to 13292)</strong></em> 16807 FE input files representing thoracolumbar spine hexahedral models, including point coordinates. To reduce the size of shared virtual finite element (FE) models, only point coordinates are shared here. The mean FE input file "Mean_Model (Template).inp" is also shared, which includes point coordinates, mesh connectivity IDs, and element sets. To generate virtual FE input files for any of the 16807 models, the corresponding shared point coordinates can be replaced into the mean FE input file (Mean_Model (Template).inp). Mesh connectivity IDs, and element sets are the same in all of FE input files. Mean FE input file includes vertebras and IVDs hexahedral meshes; pelvis, sacrum, and the femoral head triangulated meshes; and ligaments. Each point coordinate file is almost 39MB. An excel file: "Descriptive_List (16807_FE_virtual_models).xlsx" reporting measured spinopelvic parameters for 16807 virtual FE hexahedral models. The Excel file includes measured spinopelvic parameters (PI, PT, SS, LL, LL-PI, GT, RPV, RLL, LDI, RSA, TPA, and scoliosis cobb angle), GAP and IVD centric thickness for FE virtual cohort. Model ID in the excel file is correspondent to the model’s name. One video file: "how_to_replace_point_coordinates.mp4". It shows how you can replace point coordinates here to the mean FE input file "Mean_Model (Template).inp" in order to generate specific FE input file. <em><strong>Notes:</strong></em> 1- Model number in "Descriptive_List (16807_FE_virtual_models).xlsx" is correspondent to the same model number in the 16807 stereolithography (stl) files (.stl extension) representing the virtual thoracolumbar spine triangulated meshes (DOI: 10.5281/zenodo.7715658; stl.part01.rar to stl.part09.rar). 2-These point coordinates are sampled by combining the first 5 shape modes of the morphed-mesh statistical shape model in which each shape mode is discretized into 7 standard deviations: -3, -2, -1, 0, 1, 2, 3. 3- Generated FE inp files can be opened by Abaqus 2019 and later. Any other FE software which supports .inp extension also can open the files. <em><strong>Developed by: </strong></em>Morteza Rasouligandomani (Ph.D. student in biomedical engineering, Pompeu Fabra university, BCN Med-Tech group, DTIC department, Barcelona, Spain). Email contact: morteza.rasouli@upf.edu
description: All the data are protected by UPF. Intellectual property of these data is UPF.
DOI: 10.5281/zenodo.8113905
title: CSF pct

description: This is a database regarding postoperative cerebrospinal fluid procalcitonin (PCT) in neurosurgery.
DOI: 10.5281/zenodo.8113904
title: CSF pct

description: This is a database regarding postoperative cerebrospinal fluid procalcitonin (PCT) in neurosurgery.
DOI: 10.5281/zenodo.8106518
title: 16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-15: model 14294 to 15294)

description: <em><strong>16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-15: model 14294 to 15294)</strong></em> 16807 FE input files representing thoracolumbar spine hexahedral models, including point coordinates. To reduce the size of shared virtual finite element (FE) models, only point coordinates are shared here. The mean FE input file "Mean_Model (Template).inp" is also shared, which includes point coordinates, mesh connectivity IDs, and element sets. To generate virtual FE input files for any of the 16807 models, the corresponding shared point coordinates can be replaced into the mean FE input file (Mean_Model (Template).inp). Mesh connectivity IDs, and element sets are the same in all of FE input files. Mean FE input file includes vertebras and IVDs hexahedral meshes; pelvis, sacrum, and the femoral head triangulated meshes; and ligaments. Each point coordinate file is almost 39MB. An excel file: "Descriptive_List (16807_FE_virtual_models).xlsx" reporting measured spinopelvic parameters for 16807 virtual FE hexahedral models. The Excel file includes measured spinopelvic parameters (PI, PT, SS, LL, LL-PI, GT, RPV, RLL, LDI, RSA, TPA, and scoliosis cobb angle), GAP and IVD centric thickness for FE virtual cohort. Model ID in the excel file is correspondent to the model’s name. One video file: "how_to_replace_point_coordinates.mp4". It shows how you can replace point coordinates here to the mean FE input file "Mean_Model (Template).inp" in order to generate specific FE input file. <em><strong>Notes:</strong></em> 1- Model number in "Descriptive_List (16807_FE_virtual_models).xlsx" is correspondent to the same model number in the 16807 stereolithography (stl) files (.stl extension) representing the virtual thoracolumbar spine triangulated meshes (DOI: 10.5281/zenodo.7715658; stl.part01.rar to stl.part09.rar). 2-These point coordinates are sampled by combining the first 5 shape modes of the morphed-mesh statistical shape model in which each shape mode is discretized into 7 standard deviations: -3, -2, -1, 0, 1, 2, 3. 3- Generated FE inp files can be opened by Abaqus 2019 and later. Any other FE software which supports .inp extension also can open the files. <em><strong>Developed by: </strong></em>Morteza Rasouligandomani (Ph.D. student in biomedical engineering, Pompeu Fabra university, BCN Med-Tech group, DTIC department, Barcelona, Spain). Email contact: morteza.rasouli@upf.edu
description: All the data are protected by UPF. Intellectual property of these data is UPF.
DOI: 10.5281/zenodo.8106517
title: 16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-15: model 14294 to 15294)

description: <em><strong>16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-15: model 14294 to 15294)</strong></em> 16807 FE input files representing thoracolumbar spine hexahedral models, including point coordinates. To reduce the size of shared virtual finite element (FE) models, only point coordinates are shared here. The mean FE input file "Mean_Model (Template).inp" is also shared, which includes point coordinates, mesh connectivity IDs, and element sets. To generate virtual FE input files for any of the 16807 models, the corresponding shared point coordinates can be replaced into the mean FE input file (Mean_Model (Template).inp). Mesh connectivity IDs, and element sets are the same in all of FE input files. Mean FE input file includes vertebras and IVDs hexahedral meshes; pelvis, sacrum, and the femoral head triangulated meshes; and ligaments. Each point coordinate file is almost 39MB. An excel file: "Descriptive_List (16807_FE_virtual_models).xlsx" reporting measured spinopelvic parameters for 16807 virtual FE hexahedral models. The Excel file includes measured spinopelvic parameters (PI, PT, SS, LL, LL-PI, GT, RPV, RLL, LDI, RSA, TPA, and scoliosis cobb angle), GAP and IVD centric thickness for FE virtual cohort. Model ID in the excel file is correspondent to the model’s name. One video file: "how_to_replace_point_coordinates.mp4". It shows how you can replace point coordinates here to the mean FE input file "Mean_Model (Template).inp" in order to generate specific FE input file. <em><strong>Notes:</strong></em> 1- Model number in "Descriptive_List (16807_FE_virtual_models).xlsx" is correspondent to the same model number in the 16807 stereolithography (stl) files (.stl extension) representing the virtual thoracolumbar spine triangulated meshes (DOI: 10.5281/zenodo.7715658; stl.part01.rar to stl.part09.rar). 2-These point coordinates are sampled by combining the first 5 shape modes of the morphed-mesh statistical shape model in which each shape mode is discretized into 7 standard deviations: -3, -2, -1, 0, 1, 2, 3. 3- Generated FE inp files can be opened by Abaqus 2019 and later. Any other FE software which supports .inp extension also can open the files. <em><strong>Developed by: </strong></em>Morteza Rasouligandomani (Ph.D. student in biomedical engineering, Pompeu Fabra university, BCN Med-Tech group, DTIC department, Barcelona, Spain). Email contact: morteza.rasouli@upf.edu
description: All the data are protected by UPF. Intellectual property of these data is UPF.
DOI: 10.6084/m9.figshare.23274392
title: Supplementary Material for: Alterations of UHRF family expression and UHRF1/ICBP90 inhibits PTEN expression in endometrial cancer

description: Introduction: The altered protein expression of inverted CCAAT box-binding protein of 90 kDa/ubiquitin-like with PHD and RING finger domains 1 (ICBP90/UHRF1) and Np95-like ring finger protein (NIRF)/UHRF2, which belong to the ubiquitin-like with PHD and RING finger domains (UHRF) family, is linked to tumor malignancy and the progression of various cancers. To determine the role of NIRF and ICBP90 in endometrial tumorigenesis, we evaluated ICBP90 and NIRF expression levels in endometrial cancers. Also molecular alterations of PTEN expression is the important event for endometrial carcinogenesis, therefore we investigated the involvement between ICBP90 and PTEN expression. Methods: We used Western blot for NIRF, ICBP90, and PTEN expression, mutation analysis of NIRF gene, and immunohistochemical staining for the expression of NIRF and ICBP90. For immunohistochemical staining, we examined atypical endometrial hyperplasia, endometrial cancers, and non-cancerous samples. Results: Our data showed that the reduced expression of NIRF and overexpression of ICBP90 occurred in atypical endometrial hyperplasia and endometrial cancer compared to the normal endometrium. The decrease in NIRF expression was significantly correlated with histological grade. Expression of ICBP90 was high, especially in the peripheral margin of a cancer nest. Western blot analysis of endometrial cancer cell lines referred an opposite correlation between ICBP90 and phosphatase and tensin homolog (PTEN) expression. Conclusion: Our findings suggested that continually overexpressed ICBP90 may contribute to the inhibition of PTEN expression, which is a frequent and important event in endometrial carcinogenesis. We propose that the reduced NIRF expression and ICBP90 overexpression is an early event in endometrial carcinogenesis; thus ICBP90 may be useful as a therapeutic target in this disease.
DOI: 10.6084/m9.figshare.23274392.v1
title: Supplementary Material for: Alterations of UHRF family expression and UHRF1/ICBP90 inhibits PTEN expression in endometrial cancer

description: Introduction: The altered protein expression of inverted CCAAT box-binding protein of 90 kDa/ubiquitin-like with PHD and RING finger domains 1 (ICBP90/UHRF1) and Np95-like ring finger protein (NIRF)/UHRF2, which belong to the ubiquitin-like with PHD and RING finger domains (UHRF) family, is linked to tumor malignancy and the progression of various cancers. To determine the role of NIRF and ICBP90 in endometrial tumorigenesis, we evaluated ICBP90 and NIRF expression levels in endometrial cancers. Also molecular alterations of PTEN expression is the important event for endometrial carcinogenesis, therefore we investigated the involvement between ICBP90 and PTEN expression. Methods: We used Western blot for NIRF, ICBP90, and PTEN expression, mutation analysis of NIRF gene, and immunohistochemical staining for the expression of NIRF and ICBP90. For immunohistochemical staining, we examined atypical endometrial hyperplasia, endometrial cancers, and non-cancerous samples. Results: Our data showed that the reduced expression of NIRF and overexpression of ICBP90 occurred in atypical endometrial hyperplasia and endometrial cancer compared to the normal endometrium. The decrease in NIRF expression was significantly correlated with histological grade. Expression of ICBP90 was high, especially in the peripheral margin of a cancer nest. Western blot analysis of endometrial cancer cell lines referred an opposite correlation between ICBP90 and phosphatase and tensin homolog (PTEN) expression. Conclusion: Our findings suggested that continually overexpressed ICBP90 may contribute to the inhibition of PTEN expression, which is a frequent and important event in endometrial carcinogenesis. We propose that the reduced NIRF expression and ICBP90 overexpression is an early event in endometrial carcinogenesis; thus ICBP90 may be useful as a therapeutic target in this disease.
DOI: 10.5281/zenodo.8106508
title: 16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-16: model 15295 to 16295)

description: <em><strong>16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-16: model 15295 to 16295)</strong></em> 16807 FE input files representing thoracolumbar spine hexahedral models, including point coordinates. To reduce the size of shared virtual finite element (FE) models, only point coordinates are shared here. The mean FE input file "Mean_Model (Template).inp" is also shared, which includes point coordinates, mesh connectivity IDs, and element sets. To generate virtual FE input files for any of the 16807 models, the corresponding shared point coordinates can be replaced into the mean FE input file (Mean_Model (Template).inp). Mesh connectivity IDs, and element sets are the same in all of FE input files. Mean FE input file includes vertebras and IVDs hexahedral meshes; pelvis, sacrum, and the femoral head triangulated meshes; and ligaments. Each point coordinate file is almost 39MB. An excel file: "Descriptive_List (16807_FE_virtual_models).xlsx" reporting measured spinopelvic parameters for 16807 virtual FE hexahedral models. The Excel file includes measured spinopelvic parameters (PI, PT, SS, LL, LL-PI, GT, RPV, RLL, LDI, RSA, TPA, and scoliosis cobb angle), GAP and IVD centric thickness for FE virtual cohort. Model ID in the excel file is correspondent to the model’s name. One video file: "how_to_replace_point_coordinates.mp4". It shows how you can replace point coordinates here to the mean FE input file "Mean_Model (Template).inp" in order to generate specific FE input file. <em><strong>Notes:</strong></em> 1- Model number in "Descriptive_List (16807_FE_virtual_models).xlsx" is correspondent to the same model number in the 16807 stereolithography (stl) files (.stl extension) representing the virtual thoracolumbar spine triangulated meshes (DOI: 10.5281/zenodo.7715658; stl.part01.rar to stl.part09.rar). 2-These point coordinates are sampled by combining the first 5 shape modes of the morphed-mesh statistical shape model in which each shape mode is discretized into 7 standard deviations: -3, -2, -1, 0, 1, 2, 3. 3- Generated FE inp files can be opened by Abaqus 2019 and later. Any other FE software which supports .inp extension also can open the files. <em><strong>Developed by: </strong></em>Morteza Rasouligandomani (Ph.D. student in biomedical engineering, Pompeu Fabra university, BCN Med-Tech group, DTIC department, Barcelona, Spain). Email contact: morteza.rasouli@upf.edu
description: All the data are protected by UPF. Intellectual property of these data is UPF.
DOI: 10.5281/zenodo.8106507
title: 16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-16: model 15295 to 16295)

description: <em><strong>16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-16: model 15295 to 16295)</strong></em> 16807 FE input files representing thoracolumbar spine hexahedral models, including point coordinates. To reduce the size of shared virtual finite element (FE) models, only point coordinates are shared here. The mean FE input file "Mean_Model (Template).inp" is also shared, which includes point coordinates, mesh connectivity IDs, and element sets. To generate virtual FE input files for any of the 16807 models, the corresponding shared point coordinates can be replaced into the mean FE input file (Mean_Model (Template).inp). Mesh connectivity IDs, and element sets are the same in all of FE input files. Mean FE input file includes vertebras and IVDs hexahedral meshes; pelvis, sacrum, and the femoral head triangulated meshes; and ligaments. Each point coordinate file is almost 39MB. An excel file: "Descriptive_List (16807_FE_virtual_models).xlsx" reporting measured spinopelvic parameters for 16807 virtual FE hexahedral models. The Excel file includes measured spinopelvic parameters (PI, PT, SS, LL, LL-PI, GT, RPV, RLL, LDI, RSA, TPA, and scoliosis cobb angle), GAP and IVD centric thickness for FE virtual cohort. Model ID in the excel file is correspondent to the model’s name. One video file: "how_to_replace_point_coordinates.mp4". It shows how you can replace point coordinates here to the mean FE input file "Mean_Model (Template).inp" in order to generate specific FE input file. <em><strong>Notes:</strong></em> 1- Model number in "Descriptive_List (16807_FE_virtual_models).xlsx" is correspondent to the same model number in the 16807 stereolithography (stl) files (.stl extension) representing the virtual thoracolumbar spine triangulated meshes (DOI: 10.5281/zenodo.7715658; stl.part01.rar to stl.part09.rar). 2-These point coordinates are sampled by combining the first 5 shape modes of the morphed-mesh statistical shape model in which each shape mode is discretized into 7 standard deviations: -3, -2, -1, 0, 1, 2, 3. 3- Generated FE inp files can be opened by Abaqus 2019 and later. Any other FE software which supports .inp extension also can open the files. <em><strong>Developed by: </strong></em>Morteza Rasouligandomani (Ph.D. student in biomedical engineering, Pompeu Fabra university, BCN Med-Tech group, DTIC department, Barcelona, Spain). Email contact: morteza.rasouli@upf.edu
description: All the data are protected by UPF. Intellectual property of these data is UPF.
DOI: 10.5281/zenodo.8106208
title: 16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-17: model 16296 to 16807)

description: <em><strong>16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-17: model 16296 to 16807)</strong></em> 16807 FE input files representing thoracolumbar spine hexahedral models, including point coordinates. To reduce the size of shared virtual finite element (FE) models, only point coordinates are shared here. The mean FE input file "Mean_Model (Template).inp" is also shared, which includes point coordinates, mesh connectivity IDs, and element sets. To generate virtual FE input files for any of the 16807 models, the corresponding shared point coordinates can be replaced into the mean FE input file (Mean_Model (Template).inp). Mesh connectivity IDs, and element sets are the same in all of FE input files. Mean FE input file includes vertebras and IVDs hexahedral meshes; pelvis, sacrum, and the femoral head triangulated meshes; and ligaments. Each point coordinate file is almost 39MB. An excel file: "Descriptive_List (16807_FE_virtual_models).xlsx" reporting measured spinopelvic parameters for 16807 virtual FE hexahedral models. The Excel file includes measured spinopelvic parameters (PI, PT, SS, LL, LL-PI, GT, RPV, RLL, LDI, RSA, TPA, and scoliosis cobb angle), GAP and IVD centric thickness for FE virtual cohort. Model ID in the excel file is correspondent to the model’s name. One video file: "how_to_replace_point_coordinates.mp4". It shows how you can replace point coordinates here to the mean FE input file "Mean_Model (Template).inp" in order to generate specific FE input file. <em><strong>Notes:</strong></em> 1- Model number in "Descriptive_List (16807_FE_virtual_models).xlsx" is correspondent to the same model number in the 16807 stereolithography (stl) files (.stl extension) representing the virtual thoracolumbar spine triangulated meshes (DOI: 10.5281/zenodo.7715658; stl.part01.rar to stl.part09.rar). 2-These point coordinates are sampled by combining the first 5 shape modes of the morphed-mesh statistical shape model in which each shape mode is discretized into 7 standard deviations: -3, -2, -1, 0, 1, 2, 3. 3- Generated FE inp files can be opened by Abaqus 2019 and later. Any other FE software which supports .inp extension also can open the files. <em><strong>Developed by: </strong></em>Morteza Rasouligandomani (Ph.D. student in biomedical engineering, Pompeu Fabra university, BCN Med-Tech group, DTIC department, Barcelona, Spain). Email contact: morteza.rasouli@upf.edu
description: All the data are protected by UPF. Intellectual property of these data is UPF.
DOI: 10.5281/zenodo.8106207
title: 16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-17: model 16296 to 16807)

description: <em><strong>16807 thoracolumbar osteo-ligamentous spine virtual FE input files (part-17: model 16296 to 16807)</strong></em> 16807 FE input files representing thoracolumbar spine hexahedral models, including point coordinates. To reduce the size of shared virtual finite element (FE) models, only point coordinates are shared here. The mean FE input file "Mean_Model (Template).inp" is also shared, which includes point coordinates, mesh connectivity IDs, and element sets. To generate virtual FE input files for any of the 16807 models, the corresponding shared point coordinates can be replaced into the mean FE input file (Mean_Model (Template).inp). Mesh connectivity IDs, and element sets are the same in all of FE input files. Mean FE input file includes vertebras and IVDs hexahedral meshes; pelvis, sacrum, and the femoral head triangulated meshes; and ligaments. Each point coordinate file is almost 39MB. An excel file: "Descriptive_List (16807_FE_virtual_models).xlsx" reporting measured spinopelvic parameters for 16807 virtual FE hexahedral models. The Excel file includes measured spinopelvic parameters (PI, PT, SS, LL, LL-PI, GT, RPV, RLL, LDI, RSA, TPA, and scoliosis cobb angle), GAP and IVD centric thickness for FE virtual cohort. Model ID in the excel file is correspondent to the model’s name. One video file: "how_to_replace_point_coordinates.mp4". It shows how you can replace point coordinates here to the mean FE input file "Mean_Model (Template).inp" in order to generate specific FE input file. <em><strong>Notes:</strong></em> 1- Model number in "Descriptive_List (16807_FE_virtual_models).xlsx" is correspondent to the same model number in the 16807 stereolithography (stl) files (.stl extension) representing the virtual thoracolumbar spine triangulated meshes (DOI: 10.5281/zenodo.7715658; stl.part01.rar to stl.part09.rar). 2-These point coordinates are sampled by combining the first 5 shape modes of the morphed-mesh statistical shape model in which each shape mode is discretized into 7 standard deviations: -3, -2, -1, 0, 1, 2, 3. 3- Generated FE inp files can be opened by Abaqus 2019 and later. Any other FE software which supports .inp extension also can open the files. <em><strong>Developed by: </strong></em>Morteza Rasouligandomani (Ph.D. student in biomedical engineering, Pompeu Fabra university, BCN Med-Tech group, DTIC department, Barcelona, Spain). Email contact: morteza.rasouli@upf.edu
description: All the data are protected by UPF. Intellectual property of these data is UPF.
DOI: 10.57766/ipen/pbj19d
title: Processo FAPESP 202010435-08 hCG Dados Gerais

description: Projeto de Auxílio à Pesquisa FAPESP processo 2020/10435-8, "SÍNTESE DE GONADOTROFINA CORIÔNICA HUMANA RECOMBINANTE EM CÉLULAS CHO e HEK-293, PURIFICAÇÃO E CARACTERIZAÇÃO FÍSICO-QUÍMICA". Consiste na síntese do Hormonio Gonadotrofina Coriônica Humana (hCG) e células HEK293 e CHO, sua purificação e caracterização físico-química e biológica.
DOI: 10.6084/m9.figshare.17087717
title: UI prototypes dataset and heuristics specification

description: - Heuristics specifications.- User interface protypes dataset, grouped by categories and semantic levels.
DOI: 10.15156/bio/2938061
title: Cerrenaceae revisited
title: alignments and phylograms

description: Alignments and phylograms related to the paper Miettinen et al. (2023) Cerrenaceae revisited