cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12073253
title: Hydro-mechanical characterization of a fractured aquifer using groundwater level tidal analysis: effect of pore pressure and seismic dynamic shear stresses on permeability variations

description: Data repository containing


-piezometric level data


-instructions to access barometric pressure data


-code to perform tidal analysis


-pumping test data


-output analysis data
DOI: 10.5281/zenodo.12793237
title: Northern Hemisphere ice sheets and ocean interactions during the last glacial period in a coupled ice sheet-climate model

description: This archive provides the GRISLI ice sheet model and iLOVECLIM model outputs as part of the manuscript "Northern Hemisphere ice sheets and ocean interactions during the last glacial period in a coupled ice sheet-climate model".

Contact: louise.abot@locean.ipsl.fr
DOI: 10.5281/zenodo.3263811
title: Test Results at Ford Lommel Proving Ground ESR 11

description: Test Results Lommel - Range Rover Evoque
DOI: 10.5281/zenodo.8098993
title: Geochemical data of bottom sediments from a network of drainage canals located in the low-lying coastal area of Ravenna, Italy.

description: This dataset contains all raw geochemical data of bottom sediments from a network of drainage canals located in the low-lying coastal area of Ravenna. The dataset is divided in three separated excel worksheets: 

- Focus Area. Sediment composition of the 21 sediment samples collected in 2022 in the Focus Area. Refer to Figs. 1 and 2 in the manuscript Giambastiani et al., 2024 for the sample locations. Listed are also other information related to sampling, such as depositional facies (BR: beach ridge deposits; IF: Interfluvial floodplain deposits), distance from the sea, altimetry, amount of fertilizer applied based on the land use, and EC of drainage water. The sediment samples were collected in March 2022 along the drainage system of the lowlying coastal aquifer of Ravenna (Italy) by the authors.

- LRC, Land Reclamation Consortium. PTEs composition of the sediment samples of the Land Reclamation Consortium dataset. Refer to Fig. 1 and 2 in the manuscript Giambastiani et al., 2024 for the location. Listed are also other information related to sampling, such as distance from the sea, altimetry, and amount of fertilizer applied based on the land use. The sediment samples were collected since 2010 along the drainage system of the lowlying coastal aquifer of Ravenna (Italy) by The Land Reclamation Consortium of Romagna (Italy). No other uses apart from scientific purpose is allowed without notice to the authors.

- Wells. Physical and chemical groundwater parameters of 4 wells localted within the Focus Area. Refer to Fig.2  in the manuscript Giambastiani et al., 2024 for the location. Data were collected during previous studies by Greggio et al. (2020) and reprocessed to obtain vertical profiles of EC, pH, Eh, and chemical concentrations along the coastal aquifer depth.

More informations regarding the source, ownership, collection methodologies and analytical techniques are in Giambastiani et al., 2024.
description: The authors would like to thank the Land Reclamation Consortium (Consorzio di Bonifica della Romagna, Ravenna, Italy) for making available the drainage data and part of the sediment analysis.
DOI: 10.6075/j089161b
title: Historical Catalog of Winter Weather Regimes Impacting California, 1949-2017

description: This collection contains a historical catalog of daily atmospheric weather patterns observed over the North Pacific Ocean and western North America spanning 1949-2017 as described in the manuscript “Winter wet–dry weather patterns driving atmospheric rivers and Santa Ana winds provide evidence for increasing wildfire hazard in California” (Guirguis et al. 2022). The catalog classifies observed 500 mb geopotential height anomaly patterns according to sixteen recurring winter weather regimes that have been linked to atmospheric river landfalls, extreme precipitation, Santa Ana winds, floods, and wildfires in California. The source data are from NCEP/NCAR global Reanalysis (Kalnay et al. 1996). The weather regimes are defined based on daily positive/negative phase interactions between four key atmospheric teleconnection patterns over the North Pacific (“North Pacific Modes” or “NP4 modes”, Guirguis et al. 2020a and Guirguis et al. 2020b).
DOI: 10.6084/m9.figshare.23552919.v2
title: The Zn of isotopic compositions of the Wajilitag peralkaline-carbonatite suites, Xinjiang

description: The Zn of isotopic compositions of the Wajilitag peralkaline-carbonatite suites, Xinjiang Zn isotope ratios were analyzed using a Thermo Scientific <em>Neptune Plus</em> MC-ICP-MS instrument. Instrumental mass bias correction was obtained through sample-standard bracketing (SSB) method. Zinc isotopic analysis for each measurement is operated for three blocks of 40 cycles in the low-resolution mode. Zinc isotope data are reported in standard δ-notation in per mil relative to JMC Lyon Zn standard 3-0749L: δxZn (‰) = [(xZn/64Zn)sample/(xZn/64Zn)JMC 3-0749L-1] × 1000, where x = 66,67,68,70. A total procedural blank contains less than 3ng Zn. Long-term accuracy of δ66Zn is up to ±0.04 ‰. Analyzes of the BHVO-2 reference during the course of this study yielded δ66Zn values of 0.31±0.01 ‰, which is consistent with the reported values in the literatures (Moeller et al., 2012; Moynier et al., 2010; Sossi et al., 2015).
DOI: 10.6084/m9.figshare.24936888
title: Factors controlling DMS emission and atmospheric sulfate aerosols in the western Pacific continental sea.

description: The western Pacific continental sea significantly influences the regulation of climate-active gases budget and the burden of sulfate aerosols. A high-resolution, underway shipboard measurement device was used to determine the dimethyl sulfide (DMS) in the surface seawater and overlying atmosphere in the East China Continental Sea. The results showed that atmospheric and surface seawater DMS concentrations ranged from ND to 488.1 pptv and 0.91 to 29.22 nmol L<sup>-1</sup>, respectively, with mean values of 122.8 ± 86.2 pptv and 6.47 ± 3.58 nmol L<sup>-1</sup>. The variation trend of surface water DMS in the western Pacific continental sea was influenced by the abundance and composition of phytoplankton under different ocean current systems, with a significant impact from eddies on DMS production in the South China Sea. By eliminating the influence of terrestrial sources and limiting air mass transport within the marine boundary layer, strong correlations were established between atmospheric DMS and air mass exposure to chlorophyll (E<sub>chl</sub>), as well as between aerosol methanesulfonic acid (MSA) and E<sub>chl</sub>. During the aerosol sampling period, the atmospheric DMS levels (1057 ± 371 ng/m<sup>3</sup>) were significantly higher than MSA levels (46.3 ± 59.8 ng/m<sup>3</sup>) in the East China Sea, where the conversion of DMS to MSA was not affected by changes in DMS concentration. The sea-to-air fluxes of DMS varied over a wide range, from 0.03 to 156.0 μmol m<sup>-2</sup> d<sup>-1</sup>, with an average of 14.35 ± 18.58 μmol m<sup>-2</sup> d<sup>-1</sup>. Marine DMS emissions play a critical role in the formation of sulfur aerosols on the western Pacific continental shelf, accounting for 24.6 ± 7.6% (14.8 – 37.8%) of the total sulfate aerosols.
DOI: 10.6084/m9.figshare.25195730
title: Supplementary Material for: Influence of the Intracranial Contents on the Head Motion under Bone Conduction

description: Introduction: The mechanism of non-osseous bone conduction pathways, involving the intracranial contents (ICC) of the skull, is still not well understood. This study aims to investigate the influence of the ICC on the skull bone wave propagation, including dependence on stimulation location and coupling. 
Methods: Three Thiel embalmed whole-head cadaver specimens were studied before and after the removal of the ICC. Stimulation was via the electromagnetic actuators from commercial bone conduction hearing aids. Osseous pathways were sequentially activated by mastoid, forehead and BAHA location stimulation via a 5-Newton steel headband or percutaneously implanted screw. Non-osseous pathways were activated by stimulation on the eye and dura via a 5-Newton steel headband and a custom-made pneumatic holder. Under each test condition, the 3D motion of the superior skull bone was monitored at ~200 points. 
Results: The averaged response of the skull surface showed limited differences due to the removal of the ICC. In some isolated cases, the modal pattern on the skull surface showed a trend for an upshift (~1/2 octave) in the observed natural frequencies for drained heads. This was also consistent with an observed trend for an upshift in the transition frequency in the estimated deformation across the lateral surfaces of the temporal bones. Such changes were consistent with the expected reduction in mass and damping due to the absence of the ICC. 
Conclusion: Overall, the ICC affect to a limited extent the motion of the skull bone, with a limited trend for a reduction of its natural frequencies.
DOI: 10.6084/m9.figshare.25272928
title: Supplementary Material for: Associations of depressive and anxiety disorders with pulmonary disorders in the community – the PneumoLaus and PsyCoLaus studies

description: Introduction: Mental health disorders figure among the many comorbidities of obstructive respiratory diseases. The multisystemic characteristics of chronic respiratory disease and its impact on quality of life could affect depressive and/or anxiety disorders. We aimed to evaluate the association of spirometric indices, ventilatory disorders and self-reported respiratory diseases with psychiatric disorders considering potential confounders.

Methods: We analysed data from CoLaus|PsyCoLaus, a Swiss population-based cohort study, consisting of 2’774 participants (56% women; mean age: 62.3 (SD=±9.9) years) who performed spirometry and completed semi-structured psychiatric interviews. We defined ventilatory disorders using GLI-2012 references. Major depressive episode (MDE) and anxiety disorders were defined using the DSM-IV (Diagnostic and Statistical Manual).

Results: 630 subjects (22.7%) presented a recent MDE. Reversible obstructive ventilatory disorders were associated with recent MDE (OR=1.94, 95% CI95 1.10-3.43) and recent anxiety disorders (2.21 [1.16-4.22]) only in unadjusted model. Self-reported COPD and asthma were associated with MDE with ORs of 2.49 (95%CI, 1.19-5.27) and 1.56 (95% CI, 1.04-2.35) after adjustment, respectively. Possible restrictive ventilatory impairment was positively associated with recent anxiety disorders (OR=2.46, 1.10-5.51). Z-scores of FEV1, FVC and maximum mid expiratory flow (MMEF) were not associated with psychiatric disorders. There was no association between ventilatory disorders and MDE in adjusted models. 

Conclusions: In this cross-sectional population-based study, the association between respiratory disorders and depressive disorders was observed for self-reported COPD and asthma, but not with objective diagnoses based on spirometry. Lung volumes are not associated with psychiatric disorders. Further prospective studies will be necessary to understand the significance of the association.
DOI: 10.6084/m9.figshare.25347463
title: Supplementary Material for: Medullary Sponge Kidney and its Relationship with Primary Distal Renal Tubular Acidosis: Case Reports and a Comprehensive Genetics First Approach

description: Medullary sponge kidney (MSK) is a description of radiographic features. However, the pathogenesis of MSK remains unclear. MSK is supposed to be the cause of secondary distal renal tubular acidosis (dRTA), although there are case reports suggesting that MSK is a complication of primary dRTA. In addition to these reports, we report three patients with metabolic acidosis and MSK, in whom primary dRTA is confirmed by molecular genetic analyses of SLC4A1 and ATP6V1B1 genes. With a comprehensive genetics first approach using the 100,000 Genomes Rare Diseases Project dataset the association between MSK and primary dRTA is examined. We showed that many patients with MSK phenotypes are genetically tested with a gene panel which does not contain dRTA associated genes, revealing opportunities for missed genetic diagnosis. Our cases highlight that the radiological description of MSK is not a straightforward disease or clinical phenotype. Therefore, when a MSK appearance is noted, a broader set of causes should be considered including genetic causes of primary dRTA as the underlying reason for medullary imaging abnormalities.
DOI: 10.6084/m9.figshare.25828396
title: ArticlesTable.pdf

description: This table contains references to all papers used by the authors to produce the survey on Quantum Key Distribution vulnerabilities as supplementary technical content for interested readers.
DOI: 10.15128/r2x920fw90c
title: Indirect measurement of atomic magneto-optical rotation via Hilbert transform [dataset]

description: Includes six Jupyter notebooks and two datasets.
description: The Kramers-Kronig relations are a pivotal foundation of linear optics and atomic physics, embedding a physical connection between the real and imaginary components of any causal response function. A mathematically equivalent, but simpler, approach instead utilises the Hilbert transform. In a previous study, the Hilbert transform was applied to absorption spectra in order to infer the sole refractive index of an atomic medium in the absence of an external magnetic field. The presence of a magnetic field causes the medium to become birefringent and dichroic, and therefore it is instead characterised by two refractive indices. In this study, we apply the same Hilbert transform technique to independently measure both refractive indices of a birefringent atomic medium, leading to an indirect measurement of atomic magneto optical rotation. Key to this measurement is the insight that inputting specific light polarisations into an atomic medium induces absorption associated with only one of the refractive indices. We show this is true in two configurations, commonly referred to in literature as the Faraday and Voigt geometries, which differ by the magnetic field orientation with respect to the light wavevector. For both cases, we measure the two refractive indices independently for a Rb thermal vapour in a 0.6 T magnetic field, finding excellent agreement with theory. This study further emphasises the application of the Hilbert transform to the field of quantum and atomic optics in the linear regime.
DOI: 10.15482/usda.adc/1524724
title: Data from: Plant Tissue Characteristics of Miscanthus x giganteus v2
DOI: 10.34856/eos-rs_202309_morocco_earthquake
title: EOS-RS Damage Proxy Maps: Morocco, Earthquake, 8 Sep 2023

description: The Earth Observatory of Singapore - Remote Sensing Lab (EOS-RS) created preliminary Damage Proxy Maps (DPMs) covering Morocco due to the M6.8 earthquake that occurred on 8 Sep 2023. These maps were derived from synthetic aperture radar images acquired by the Copernicus Sentinel-1 satellites operated by the European Space Agency.
DOI: 10.4225/41/58980b55b0495
title: Derived Optimal Linear Combination Evapotranspiration v 1.0
DOI: 10.5066/f7gm86gz
title: Sample collection information, single nucleotide polymorphism, and microsatellite data for white-tailed ptarmigan across the species range generated in the Molecular Ecology Lab during 2016

description: This data release comprises a dataset that contains sample collection information and microsatellite genotypes, and another dataset that contains single nucleotide polymorphism (SNP) genotypes with sample collection information for populations of white-tailed ptarmigan across the species' range. There is also an additional file (accession numbers.xlsx) linking samples to accession numbers in Genbank. This data was collected in order to address the following: The delineation of intraspecific units that are evolutionarily and demographically distinct is an important step in the development of species-specific management plans. Neutral genetic variation has served as the primary data source for delineating units for conservation, but with recent advances in genomic technology, we now have an unprecedented ability to utilize information about neutral and adaptive variation across the entire genome. Here, we use traditional genetic markers (microsatellites) and a newer reduced-representation genomic approach (single nucleotide polymorphisms) to delineate distinct groups of white-tailed ptarmigan (Lagopus leucura), an alpine-obligate species that is distributed in naturally fragmented habitats from Alaska to New Mexico.
DOI: 10.5067/aqua/modis/l3b/chl/2018
title: MODIS-Aqua Level 3 Binned Chlorophyll Data Version R2018.0
DOI: 10.5281/zenodo.10853668
title: Replication Data for the paper "Predicting Food-Security Crises in the Horn of Africa Using Machine Learning"

description: This folder contains all input data necessary to run the machine learning model as described in the paper "Predicting Food Security Crises in the Horn of Africa Using Machine Learning".  
This model is developed at the Institute for Environmental Studies, Vrije Universiteit Amsterdam. 
Questions or remarks can be send to tim.busker@vu.nl
DOI: 10.5281/zenodo.11178560
title: Data used for analysis in "Calibrating tropical forest coexistence in ecosystem demography models using multi-objective optimization through population-based parallel surrogate search"
DOI: 10.5281/zenodo.12631679
title: On the increase of climate sensitivity and cloud feedback with warming in the Community Atmosphere Models

description: Citation: Zhu, J., & Poulsen, C. J. (2020). On the Increase of Climate Sensitivity and Cloud Feedback With Warming in the Community Atmosphere Models. Geophysical Research Letters, 47(18), e2020GL089143. https://doi.org/10.1029/2020GL089143

 

Upadated on July 3, 2024: add more timeseries of precipitation and energy fluxes for analysis in Bonan, Schneider, & Zhu (2024).

David Bonan, Tapio Schneider, Jiang Zhu. Precipitation over a wide range of climates simulated with comprehensive GCMs. ESS Open Archive . April 25, 2024.DOI: 10.22541/essoar.171405864.45942692/v1
DOI: 10.5281/zenodo.8095929
title: Raw data for the Article "Cyclopentadienone Iron Complex-Catalyzed Hydrogenation of Ketones: An Operando Spectrometric Study Using Pressurized Sample Infusion-Electrospray Ionization-Mass Spectrometry"

description: This data set contains the raw data (NMR, LC-MS, ESI-MS, HRMS, Elemental Analysis) for the article "Cyclopentadienone Iron Complex-Catalyzed Hydrogenation of Ketones: An <em>Operando</em> Spectrometric Study Using Pressurized Sample Infusion-Electrospray Ionization-Mass Spectrometry" published in <em>Organometallics</em>, DOI: https://doi.org/10.1021/acs.organomet.2c00341 The compound names correspond to the ones used in the article and its supporting information.
DOI: 10.5281/zenodo.8145082
title: Straw supply costs for Germany – NUTS3 | 2010-2020 | farm-side

description: The dataset contains information on the supply costs of cereal straw in Germany from 2010-2020 at NUTS 3 (county) level. The supply costs depend on the specific straw yield in each NUTS region and the assumed underlying supply chain. The specific straw yield is the NUTS specific average of the most relevant cereals [wheat, rye, oats, triticale, spring barley, winter barley] The supply chain is defined according to the NUTS specific average farm area in relation to the national average. Supply costs are divided into collection costs, transport costs, storage costs and opportunity costs. Opportunity costs are defined as the monetary cost of replacing the nutrients removed. The connecting research paper, which describes the methodology in detail is available under this DOI: https://doi.org/10.1007/s12649-024-02528-x.
DOI: 10.6084/m9.figshare.21640196.v2
title: Physicochemical Characteristics of Pangasius sp. Skin Gelatin-based Edible Film Enriched with Silver Nanoparticles

description: Data set for Physicochemical Characteristics of Pangasius sp. Skin Gelatin-based Edible Film Enriched with Silver Nanoparticles
DOI: 10.6084/m9.figshare.25792383
title: Genome annotation of <i>Serrognathus titanus</i>

description: Genome annotation (repeats and protein-coding genes)
DOI: 10.6084/m9.figshare.26310535
title: Supplementary Material for: Acute care, secondary prevention, and outcomes after ischaemic and haemorrhagic stroke in men and women: a data-linkage study

description: Introduction
There is evidence that sex differences exist in stroke presentation, risk factors, severity, treatment, and outcomes. To further understand this, we explored how sex differences influence acute stroke management, secondary prevention prescribing and mortality outcomes in a well-characterised cohort of first-ever stroke patients in Scotland.

Methods
This is a retrospective, population-based, data-linkage study of stroke admissions to acute care hospitals in Scotland between 1 January 2011 and 31 December 2018. Data sources included the Scottish Stroke Care Audit (SSCA), the Prescribing Information System (PIS), the Scottish Morbidity Record 01 (SMR01), and the National Records of Scotland (NRS) Death Records. Multivariable logistic regression was used to explore the association between patient sex, acute stroke care and secondary prevention prescribing, while Cox proportional hazards models were used to explore the association between patient sex and all-cause mortality up to one year after index event.

Results
This study included 5901 patients with a first-ever intracerebral haemorrhage (ICH) and 47 087 patients with a first-ever acute ischaemic stroke (AIS). After an ICH, women had significantly lower odds of receiving all components of the stroke care bundle (adjusted odds ratio (aOR), 0.78; 95% confidence interval (CI), 0.69 – 0.87) and were less likely to be prescribed antihypertensives within ninety days after discharge (aOR, 0.78; 95% CI, 0.63 – 0.97) to usual place of residence. There was no sex difference in stroke care bundle achievement for those admitted with AIS, however, women had significantly lower odds of receiving antihypertensives, lipid-lowering drugs or oral anticoagulants (OAC) after discharge. The risk of all-cause mortality was lower in women at one year after both ICH (adjusted hazard ratio (aHR), 0.90; 95% CI, 0.83 – 0.98) and AIS (aHR, 0.91; 95% CI, 0.87 – 0.95) after adjusting for potential confounders.

Conclusion
The sex differences in stroke treatment and outcomes may be partly explained by the older age of women at the time of stroke, which influences stroke presentation, severity, and prognosis. However, following adjustment, women had reduced risk of all-cause mortality after both ICH and AIS.