cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5d31n
title: MassIVE MSV000083293 - GFP-fused 53BP1 interacting proteins in MCF7 cells with and without irradiation
title: Experiment: proteins immunoprecipitated with a GFP-fused 53BP1 fragment. Description: GFP-fused 53BP1 fragment was conditionally expressed (Tet-ON) in MCF7 cells in duplicate. Cells were irradiated or not, cross linked with 0.05% paraformaldehyde, lysed with the EZ-ChIP lysis buffer. Lysates were run on an SDS-PAGE gel, lanes were cut into four equally sized pieces. Sections were separately in-gel digested with trypsin. Non-Irradiated control sample was labeled with O18 by digesting in the presence of O18 water. Duplicates per section of both samples (non-irradiated and irradiated) were combined to give four samples (one per MW range section). Samples were run on the LTQ Orbitrap XL. Data were searched with Mascot (once including both O16 and O18 at the C-terminus, once allowing only O16, once allowing only O18), and analyzed in Scaffold.
DOI: 10.5281/zenodo.2530844
title: Mass spectrometric diffusion parameters and 3D structural analysis of oligomeric associates of glycylhomopenta– and glycylhomohexapeptide and their complexes of silver(I) ion – a stochastic dynamics approach - mass spectrometric dataset

description: Experimental mass spectrometric dataset (in multiplication) of Ag<sup>I</sup>-complexes of glycyl-containing oligopeptides under ESI(+)-conditions.
DOI: 10.5281/zenodo.2530845
title: Mass spectrometric diffusion parameters and 3D structural analysis of oligomeric associates of glycylhomopenta– and glycylhomohexapeptide and their complexes of silver(I) ion – a stochastic dynamics approach - mass spectrometric dataset

description: Experimental mass spectrometric dataset (in multiplication) of Ag<sup>I</sup>-complexes of glycyl-containing oligopeptides under ESI(+)-conditions.
DOI: 10.7910/dvn/3rvut0/8a5or8
title: presidenitalrulemaking_BJPS.do
DOI: 10.7910/dvn/70snis/flos1p
title: progresa.tar
DOI: 10.7910/dvn/c6yo4t/eqtvs8
title: Polaris_extinctionGaiaAg.pdf
DOI: 10.7910/dvn/haggvb/wqod93
title: Data Codebook.docx

description: Codebook
DOI: 10.7910/dvn/l55wpk/jgblo5
title: dataset laws.tab
DOI: 10.7910/dvn/qoeyfe/8bxy94
title: Polaris_extinctionGaiaAg.pdf
DOI: 10.7910/dvn/seocq0/garimo
title: Muslim ban volume trend from 2015-03-07 to 2017-03-31.tab
DOI: 10.18739/a2x921j1g
title: Ice sheet and ice cap firn core physical and chemical stratigraphy, Disko Bay region, GreenLand, 2014-2015
DOI: 10.6073/pasta/a894270f5c8c4ec393b233751f105544
title: Climate data for C1 data loggers (CR23X and CR1000), 2000 - ongoing, daily.

description: Climatological data were collected from the C1 climate station on Niwot Ridge (3018 m elevation) throughout the year. From 2000-06-24 to 2013-03-25, data were recorded using a Campbell Instruments CR23X data logger. Starting 2013-03-27, data were recorded using a Campbell Instruments CR1000 data logger. Maximum and minimum values were recorded instantaneously, with a sampling interval of 5 seconds. Daily means and totals were calculated from 17,280 individual measurements. The CR23X logger was programmed to generate both hourly and daily output. The CR1000 logger generated daily, hourly, and minute data until 2014-09-10, when these time periods were discontinued and only 10 minute raw data were collected.
DOI: 10.6073/pasta/e840c6c921afb43c326111b525de62b2
title: Secchi depth data and discrete depth profiles of photosynthetically active radiation, temperature, dissolved oxygen, and pH for Beaverdam Reservoir, Carvins Cove Reservoir, Falling Creek Reservoir, Gatewood Reservoir, and Spring Hollow Reservoir in southwestern Virginia, USA 2013-2018

description: Discrete depth profiles of temperature, dissolved oxygen, and pH were
  collected with a YSI water quality probe and discrete depth profiles
  of photosynthetically active radiation (PAR) were collected with a
  LI-COR underwater light meter from 2013 to 2018 in five drinking water
  reservoirs in southwestern Virginia, USA. Secchi disk depth data
  complement the PAR data to estimate water transparency. Additional
  variables measured by the YSI are conductivity and ORP (oxidation
  reduction potential or redox); all YSI and PAR depth profiles were
  collected on approximately 1-meter intervals. These reservoirs are:
  Beaverdam Reservoir (Vinton, Virginia), Carvins Cove Reservoir
  (Roanoke, Virginia), Falling Creek Reservoir (Vinton, Virginia),
  Gatewood Reservoir (Pulaski, Virginia), and Spring Hollow Reservoir
  (Salem, Virginia). Beaverdam, Carvins Cove, Falling Creek, and Spring
  Hollow Reservoirs are owned and operated by the Western Virginia Water
  Authority as primary or secondary drinking water sources for Roanoke,
  Virginia, and Gatewood Reservoir is a drinking water source for the
  Town of Pulaski, Virginia. The data package consists of two datasets:
  1) YSI and PAR profiles; 2) Secchi depth data. The YSI and PAR depth
  profiles and Secchi depths were measured at the deepest site of each
  reservoir adjacent to the dam (Site 50), as well as at a gauged weir
  on the primary inflow tributary (Site 100) at Falling Creek Reservoir
  and other in-reservoir transects in Falling Creek Reservoir (Site 45,
  30, 20, 10). The samples were collected approximately fortnightly in
  the spring months (Mar. - May), weekly in the summer and early autumn
  (Jun. - Sept.), and monthly in the late autumn and winter (Oct. -
  Feb.).
DOI: 10.17909/t9-mrpw-gc07
title: Kepler Light Curves Optimized For Asteroseismology ("KEPSEISMIC")

description: KEPSEISMIC light curves are obtained from Kepler pixel-data files using large custom apertures that produce more stable light curves on longer time scales for seismic studies. For each pixel in the pixel-data file, a reference weighted flux value is computed as the 99.9th percentile of the flux divided by its error representing a measure of the signal-to-noise ratio. Starting from the center of the point-spread function of the target star pixels, new pixels are added in one direction of the mask if two conditions are fulfilled: i) the reference weighted flux of the pixel is higher than a threshold of 100; ii) the weighted flux is smaller than the value of the previous pixel within a small tolerance. In most cases, this second condition allows the team to remove the pixels corresponding to a second star present in the aperture.

The resultant light curve is processed through the implementation of the Kepler Asteroseismic Data Analysis and Calibration Software (KADACS, García et al. 2011). KADACS corrects for outliers, jumps, and drifts, properly concatenates the independent Kepler Quarters in a star-by-star basis. It also fills the gaps shorter than 20 days in long cadence data following in-painting techniques based on a multi-scale cosine transform (García et al. 2014, Pires et al. 2015). The resulting light curves are high-pass filtered at 20, 55 days (quarter by quarter) and 80 days (using the full light curve at once) yielding three different light curves for each target. This ensures the homogeneity of the treatment done to the light curves when a single filter is used (e.g. for studies of the stellar convective background). For light curves longer than one month, KADACS corrects for discontinuities at the edges of the Kepler Quarters.
DOI: 10.25345/c5w310
title: MassIVE MSV000083294 - GNPS_GC_bacteria_fungus_interaction
title: Volatiles from had space of the cultures of fungus, bacteria and interacting bacteria and fungus. The volatiles are collected from headspace with Polydimethylsiloxane/Divinylbenzene (PDMS/DVB) df 65 um SPME.
DOI: 10.5063/f15h7dhh
title: A Closed-Loop Simulation Model For In-season Management of Kuskokwim River Chinook Salmon, Tailored for a Value of Information Analysis and informed by Data Spanning 1984-2016

description: In-season harvest management in large-scale subsistence fisheries for Pacific salmon is often conducted in the face of poor information (both quality and quantity). Before deciding which information sources to invest in generating or improving, it is prudent to first evaluate which will provide the greatest gains in management performance, and in which cases. We created a closed-loop simulation model to evaluate the Value of Information of various data sources for decision-making regarding in-season harvest management in the Kuskokwim River, Alaska. The information sources we evaluated were (1) improved pre-season forecasts of run size, (2) in-season abundance index data, and (3) in-season harvest estimates. The model contains submodels for the true system dynamics (i.e., the spatiotemporal aspects of the fish and fishers), observed dynamics (i.e., assessment), and management based on assessment information (i.e., weekly decisions about how much fishing to allow). The software package included here includes all model code to specify and run the analysis, as well as all data used to parameterize the model (biological information like run timing, species composition, telemetry data and sociological information like the number of fishing households in each village and the amount of harvest by species taken by each village). The file InSeason_VOI_Model.zip is a zipped directory including all of the code and data. The data used to parameterize the model is also included separately as individual files to more clearly describe their contents. These data were originally sourced from Alaska Department of Fish and Game reports (see methods section for details).
DOI: 10.5063/f1ht2mjr
title: Alaska Board of Fisheries Proposals 1959-2016

description: Every three years, the Alaska Board of Fish (Board) calls for regional fisheries management proposals, inviting the public to directly participate in fisheries governance. Anyone can submit a proposal and provide written or oral testimony on any of the proposals, which constitute potential regulatory changes and are accessible in an online proposal book. Proposals are logged by Board staff and recorded in the meeting documents, which are stored online and archived at the State, Library, Archives, and Museum (SLAM) in Juneau. Each proposal contains valuable information about stakeholder demographics, affiliations, interests, and positions on allocation disputes. Alaska's inclusion of stakeholders in its decision-making process began in 1959, decades before researchers, managers, and politicians began advocating for increased stakeholder involvement in fisheries management. Stakeholder participation is now lauded as a key component to successful fisheries management, but little data exists that characterizes and assesses this participation. Using integrated data digitization and coding methods, this database quantifies stakeholder participation in Alaska's fisheries management. This dataset includes a tabular data representation of all Board of Fisheries proposals from 1959-2016 (BOF_Proposals.csv). Proposal materials consisted of scanned pdfs of board generated documents, including proposal books, vote logs, and meeting minutes. The included coding document (BOF_Proposal_Coding.pdf) outlines how to translate the diverse array of information in these documents into a regular tabular structure. Quality control of these data is ongoing, and a number of known issues in the tabular data remain. See methods for more information.
DOI: 10.5063/f1ng4nw6
title: Alaska Board of Fisheries Members and Regions

description: The following is a table listing all of the people who served on the Alaska Board of Fisheries Members from 1975-2017. The Board consists of seven members serving three-year terms and its main role is to conserve and develop the fishery resources of the state. Members are appointed by the governor, and then then must be approved by the legislature. The board provides a local forum for regional opinions on fish and game issues, facilitates resource allocation, and makes regulatory changes. The original source of these data is the Alaska Department of Fish and Game. Original data were extracted from here http://www.adfg.alaska.gov/index.cfm?adfg=fisheriesboard.past_members. This data was modified by reformatting the columns slightly, including the addition of columns to specify whether or not the member served as the board chair, whether the member is male or female, what region their community is located in, and whether that community is rural or urban. The rural/urban distinction is based on the definition used by the Federal Subsistence Board to determine the subsistence priority. The male/female distinction was inferred from the name of the Board of Fisheries member.
DOI: 10.5063/f1x0658r
title: Age demographics of salmon permit holders in the Alaskan Commercial Fisheries Entry Commission, 1976-2016

description: The Commercial Fisheries Entry Commision (CFEC) is an independent, autonomous agency of the State of Alaska which regulates entry into Alaska's commercial fisheries. The CFEC is committed to promoting conservation and sustained-yield management of Alaska's unique fishery resources and boosting economic stability among fishermen and their dependents. To ensure effective management of commercial fisheries, all vessels used for commercial fishing or related activities must be licensed by the CFEC. This includes fishing vessels, tenders, packers, processors, transporter vessels, and seine skiffs. The CFEC is responsible for leasing all commercial fishing permits including permits for limited-entry fisheries. Limited-entry fisheries include all state salmon fisheries, most herring fisheries, and various other fisheries. This dataset includes age demographics, broken out into decades, of all salmon permit holders between 1975 and 2016. The source of this permit information is permit application and renewal forms collected by CFEC.
DOI: 10.5063/f10r9mmz
title: Alaska Local and Regional Information (ALARI) data on Alaska's workforce: characteristics, tax revenue, and industries

description: These three datasets are a consolidated version of the many found on http://live.laborstats.alaska.gov/alari/. Data were initially collected by the Alaska Department of Labor and Workforce Development, Research and Analysis Section and stored on the Alaska Local and Regional Information (ALARI) site. In this archived version, a web scrape was performed from the ALARI site with the help of R's 'rvest' package. The .html code on the ALARI site was inspected and certain codes were targeted to generate correct web URLs for each location's data on worker characteristics, tax revenue, and industries. The data were then copied from the contents of these URLs and stored into three separate datasets; one each for worker characteristics, tax revenue, and industries. The purpose of this project is to compile all separate records for each unique documented location within Alaska into one dataset. Three records for Alaskan locations were of interest: tax revenue, industry information, and worker characteristics. In all, the three datasets are intended for inference into the nature of the Alaskan labor force from 2001 to 2016.
DOI: 10.5063/f11r6nrb
title: A Closed-Loop Simulation Model For In-season Management of Kuskokwim River Chinook Salmon, Tailored for a Value of Information Analysis and informed by Data Spanning 1984-2016

description: In-season harvest management in large-scale subsistence fisheries for Pacific salmon is often conducted in the face of poor information (both quality and quantity). Before deciding which information sources to invest in generating or improving, it is prudent to first evaluate which will provide the greatest gains in management performance, and in which cases. We created a closed-loop simulation model to evaluate the Value of Information of various data sources for decision-making regarding in-season harvest management in the Kuskokwim River, Alaska. The information sources we evaluated were (1) improved pre-season forecasts of run size, (2) in-season abundance index data, and (3) in-season harvest estimates. The model contains submodels for the true system dynamics (i.e., the spatiotemporal aspects of the fish and fishers), observed dynamics (i.e., assessment), and management based on assessment information (i.e., weekly decisions about how much fishing to allow). The software package included here includes all model code to specify and run the analysis, as well as all data used to parameterize the model (biological information like run timing, species composition, telemetry data and sociological information like the number of fishing households in each village and the amount of harvest by species taken by each village). The file InSeason_VOI_Model.zip is a zipped directory including all of the code and data. The data used to parameterize the model is also included separately as individual files to more clearly describe their contents. These data were originally sourced from Alaska Department of Fish and Game reports (see methods section for details).
DOI: 10.5063/f12j694c
title: Commercial Fisheries Entry Commission Basic Information Table, 1975-2016

description: The Commercial Fisheries Entry Commission (CFEC) is an independent, autonomous agency of the State of Alaska which regulates entry into Alaska's commercial fisheries. The CFEC is committed to promoting conservation and sustained-yield management of Alaska's unique fishery resources and boosting economic stability among fishermen and their dependents. The CFEC is responsible for leasing all commercial fishing permits including permits for limited-entry fisheries. Limited-entry fisheries include all state salmon fisheries, most herring fisheries, and various other fisheries. The number of permits, total pounds landed, total estimated gross earnings, and average estimated gross earnings per permit are provided for each permit fishery by year, from 1975-2016. Information is subtotaled by resident type. Estimated permit values at year-end are shown for limited fisheries with a sufficient number of permit sales. The data included in this package has been modified slightly from what was provided by CFEC: currency columns were reformatted as numeric, and an empty column was removed.
DOI: 10.5063/f13j3b6v
title: Changes in the distribution of Alaska's Commercial Fisheries Entry Permits

description: Marcus Gho and Craig Farrington analyzed changes in the distribution of Alaska’s permanent permit holders in Alaska's limited entry fisheries in their report "Changes in the Distribution of Alaska's Commercial Fisheries Entry Permits, 1975 – 2015" (M. Gho And C. Farrington. 2016. CFEC Report 16-3N, Changes in the Distribution of Alaska's Commercial Fisheries Entry Permits, 1975 – 2015). Drafters of the Limited Entry Act in Alaska were concerned that permits would not be easily accessible for younger Alaskans, and this report was produced so that concerned parties can be properly informed. These data are from 1975-2015 and represent the 65 commercial fisheries that were issued permanent limited entry permits: 26 salmon fisheries, 19 herring fisheries, 9 crab fisheries, 5 sablefish fisheries, 3 shrimp fisheries, and 3 dive fisheries(sea urchin, sea cucumber, geoduck). The report includes information on residential types of permit transfers, distribution of permit holders, and the age of permit holders and recipients. Here, we include 5 data tables from chapter four and two tables from chapter three of the report that are made publicly available on the Commercial Fishery Entry Commission webpage here: https://www.cfec.state.ak.us/RESEARCH/16-3N/16-3N.htm. Data tables were reformatted so that separate tables with titles were merged into a single table, with an added column containing the information in the title. Otherwise the tables remain unchanged. These data tables include contain information pertaining to the age differences between permit transferors and recipients by fishery, residential type of these transferors and recipients, age distribution of residential situation, and distribution of residential types of permit holders. The attached documents are Marcus Gho's and Craig Farrington's "Changes in the Distribution of Alaska's Commercial Fisheries Entry Permits" research paper and their "Executive Summary" of their findings, respectively.
DOI: 10.5063/f14j0cb7
title: Alaska fisheries and wildlife advisory committees by region and recent activity

description: Advisory Committees (AC) are local groups that meet to discuss fish and wildlife issues, provide a local forum for those issues, and make recommendations to the Alaska boards of fisheries and game. Their purpose as established by the Joint Boards of Fisheries and Game includes developing regulatory proposals, evaluating regulatory proposals and making recommendations to the appropriate board, providing a local forum for fish and wildlife conservation and use, and consulting with individuals, organizations, and agencies that relate to the Board of Fish. In this dataset, data were collected from the Alaska Department of Fish and Game and organized into 13 State of Alaska's Salmon and People (SASAP) regions and 6 AC regions. Data are included about committee activity, number of recent meetings, and urban or rural delineation. The data are stored in ADFGAdvisoryCommittees.csv. AC_analysis.Rmd uses this data to create some visualizations depicting number of meetings by region, by committee type, and budget by committe type. These visualizations are stored to AC_analysis.pdf
DOI: 10.5063/f16971t7
title: Commercial Fisheries Entry Commision Public Permit Database from 1975-2016

description: The Commercial Fisheries Entry Commision (CFEC) is an independent, autonomous agency of the State of Alaska which regulates entry into Alaska's commercial fisheries. The CFEC is committed to promoting conservation and sustained-yield management of Alaska's unique fishery resources and boosting economic stability among fishermen and their dependents. To ensure effective management of commercial fisheries, all vessels used for commercial fishing or related activities must be licensed by the CFEC. This includes fishing vessels, tenders, packers, processors, transporter vessels, and seine skiffs. The CFEC is responsible for leasing all commercial fishing permits including permits for limited-entry fisheries. Limited-entry fisheries include all state salmon fisheries, most herring fisheries, and various other fisheries. This dataset includes permit information of all state commercial fisheries between 1975 and 2016. Permit information includes fishery, permit type, permit holder name and address, dates of permit, vessel identification, and information on transferable nature of individual permits. The source of this permit information is various forms collected by CFEC including permit application, transfer requests, and address change forms.
DOI: 10.5063/f17942x5
title: Area burned by fire per SASAP region and Hydrolic Unit (HUC8) boundary for Alaskan watersheds

description: This dataset was created to assess the area burned in each SASAP region and each HUC8 watershed of Alaska. Twenty rasters with annual fire data from 1992 to 2011 were aggregated to create a binary index of 0 (not burned) and 1 (burned) pixels, producing a geospatial dataset of total land area burned over 20 years in Alaska. The original source of the rasters is "Lindgren, Michael, T. Kurkowski, A. Springsteen. Fire History - Area Burned - Annual. SNAP Data Archive. 2015. http://ckan.snap.uaf.edu/dataset/fire-history-area-burned-annual." This dataset was subset by two areas: 1) The region of Alaska (“sasap_regions.zip" shapefile, located here: https://knb.ecoinformatics.org/#view/urn:uuid:2c1c26fc-bfb9-4b6a-8d4a-0be8e61c4deb) to create the shapefile, "regions_slope_shp.zip”, 2) watershed ("sasap_watersheds_gapfix.zip" shapefile, located here: https://knb.ecoinformatics.org/#view/urn:uuid:2b5ab57e-38ec-4bc9-8290-f080ec0befb4) to create the shapefile "watersheds_slope_shp.zip". This package archives CSV and shapefile versions of the resulting datasets along with the Python script for the analysis.’