cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.26h4v/3
title: rbcL&trnL Sanger

description: Sequences of trnL and rbcL plant barcodes generated with use of Sanger technique from steppic plants and from DNA isolates obtained from steppic beetles. RbcL alignment use for phylogenetic tree reconstruction and rbcL Maximum Likelihood tree reconstructed with use of PhyML software.
DOI: 10.5061/dryad.26h4v/4
title: trnL&rbcL Illumina

description: Illumina MiSeq trnL and rbcL plant barcode sequences (forward and reverse) generated from DNA isolates obtained from 15 selected beetles and additional sample which contain sequences generated from 8 selected steppic plants (Eryngium planum, Inula ensifolia, Onobrychis viciifolia, Adonis vernalis, Salvia pratensis, Rosa canina, Arenaria serpyllifolia, and Elymus repens, prepared for method validation purposes)
DOI: 10.5061/dryad.296h2/1
title: Limb Inertial Properties of Individual Limbs from Sampled Mammals

description: Spreadsheet containing data on limb mass, length, center of mass position, moment of inertia, natural frequency, and radius of gyration of individual limbs for each specimen sampled. Within the file, 'COM' denotes center of mass position, 'MOI' denotes moment of inertia, 'NF' denotes natural frequency, and 'RG' denotes radius of gyration. 'Rel. COM' denotes the relative center of mass position, the center of mass position expressed as a percentage of limb length. Likewise, 'Rel. RG' denotes relative radius of gyration, the radius of gyration expressed as a percentage of limb length.
DOI: 10.5061/dryad.296h2/2
title: Mean Values of Limb Inertial Properties for Sampled Species

description: Spreadsheet containing mean values of inertial properties for each sampled species, in addition to mean values of body mass. These values were used in our analyses. Within the file, 'COM' denotes center of mass position, 'MOI' denotes moment of inertia, 'NF' denotes natural frequency, and 'RG' denotes radius of gyration. 'Rel. COM' denotes the relative center of mass position, the center of mass position expressed as a percentage of limb length. Likewise, 'Rel. RG' denotes relative radius of gyration, the radius of gyration expressed as a percentage of limb length.
DOI: 10.5061/dryad.2rg12/1
title: Dstat_Tests_fasta

description: Fasta files for four-taxon Patterson's D-statistics used in Meik et al., 'Limitations of climate data for inferring species boundaries: insights from speckled rattlesnakes.' .fasta files.
DOI: 10.5061/dryad.2rg12/2
title: Morph_dataset

description: Morphological dataset used in Meik et al., 'Limitations of climate data for inferring species boundaries: insights from speckled rattlesnakes.' See Supplemental Information for metadata (character abbreviations). .csv file
DOI: 10.5061/dryad.2rg12/3
title: mtDNA_590_bp_ATPase_alignment

description: mtDNA alignment for a fragment of ATPase 8 and 6 (590 bp), used in Meik et al. 'Limitations of climate data for inferring species boundaries: insights from speckled rattlesnakes.' .fasta file
DOI: 10.5061/dryad.2rg12/4
title: nucDNA_1826_SNPs

description: Alignment of 1826 SNPs used for STRUCTURE analysis in Meik et al., 'Limitations of climate data for inferring species boundaries: insights from speckled rattlesnakes.' .stru file
DOI: 10.5061/dryad.2rg12/5
title: nucDNA_2318_SNP_alignment

description: Alignment of 2318 SNPs used in phylogenetic analysis of rattlesnake relationships in Meik et al. 'Limitations of climate data for inferring species boundaries: insights from speckled rattlesnakes.' phylip
DOI: 10.5061/dryad.2rg12/6
title: nucDNA_SNAPP_alignment

description: Alignment of SNPs used for species tree analysis (SNAPP) in Meik et al. 'Limitations of climate data for inferring species boundaries: insights from speckled rattlesnakes.' .nex file
DOI: 10.5061/dryad.34sv3/1
title: AllSamples-Plates1-8-H Horticola-January2015

description: 12 columns: (ref): just a reference number for the sample line in the table. (Extract-ID): DNA-extract ID. (SIN1): network of origin in Aland islands. (year): year of collect. (ID): sample ID from the field. (patch): patch of origin in Aland islands. (Geo): population of origin. (Sex): sex of the sample. (COI): result from mtDNA PCR, N=negative, y=positive. (COI-seq): if the sample has been sequenced for mtDNA the ID of the mitotype is given. (WolbINF): result from the Wolbachia PCRs, N=uninfected, y=infected. (Wolb-Seq): if the wolbachia loci have been sequenced,  the ID of the strain is given.
DOI: 10.5061/dryad.35935/1
title: Majority-rule consensus phylogenetic tree Bulbophyllum clade C (Figure 2)

description: Majority-rule consensus of Madagascan Bulbophyllum clade C (sects. Calamaria, Humblotiorchis, Bifalcula) estimated under Bayesian Inference (MRBAYES version 3.1.2)
DOI: 10.5061/dryad.35935/2
title: 5,000 post-burn-in trees of the BI analysis (Figure 3A)

description: Last 5,000 post-burn-in trees of the BI analysis used for ancestral character reconstruction (in BAYESTRAITS version 1.0)
DOI: 10.5061/dryad.35935/3
title: 1,000 dated BEAST trees  (Figure 3,4; Table 3,4)

description: 1,000 secondarily calibrated BEAST (version 1.6.1 ) trees resampled at a lower frequency (LOGCOMBINER version 1.6.1). Used for ancestral character reconstruction (Figure 3B), LTT plot (Figure 3), diversifcation analyses (Figure 4,Tab.3,Tab.4) using R packages APE and DIVERSITREE.
DOI: 10.5061/dryad.35935/4
title: Chronogram of Madagascan Bulbophyllum clade C (Figure 3C)

description: Secondarily calibrated BEAST version 1.6.1 chronogram of Madagascan Bulbophyllum clade C.
DOI: 10.5061/dryad.56f1h/1
title: Fundus image sequences

description: 12 Fundus image sequences recorded in 12 young (age 22-31) healthy subjects with a scanning laser ophthalmoscope under near-infrared illumination. Sequences of 5.0 to 5.5 s length, collected at 9 images/s, resulting in 45 to 50 images trimmed to vertical bands (386 x 768 pixels) centered on optic nerve head. Data provided as zipped uncompressed TIFF stacks files
DOI: 10.5061/dryad.58445/1
title: Soranno_MI_LULC

description: We compiled lake water quality and land use/land cover (LULC) data on Michigan lakes. We broadly define lakes to include both lakes and reservoirs. MSU’s Remote Sensing and GIS Outreach and Services (RS/GIS) staff conducted all landscape analyses that have been incorporated into this database. At RS/GIS, Justin Booth and Sarah Acmoody were the analysts creating the landscape portions of the database. Lakes were selected that had historical water quality data collected from ~ 1975-1985 by the Michigan Department of Environmental Quality. The lakes were further selected based on whether they had lake depth associated with them, lake classifications, and other metrics. All lakes that the MI-DEQ sampled only were &gt; 20 ha and had public access.
DOI: 10.5061/dryad.5gg87/1
title: Eldegard et al community data

description: Eldegard et al community matrix vascular plant data to GNMDS raw&weighed
DOI: 10.5061/dryad.672gn/1
title: Vegetation surveys and mean community traits
DOI: 10.5061/dryad.67sj1/1
title: Kropatsch et al 2015 Norwegian Lundehund Y mtDNA genetic data

description: Excel file containing genotypes of three variable mitochondrial DNA (mtDNA) sites in the ATP synthase subunit 6 gene, a 3’portion of ATP synthase subunit 8 gene and a portion of D-loop sequence as well as of nine Y-chromosomal markers (five single nucleotide polymorphisms (SNPs) and four microsatellites) in 57 Norwegian Lundehund individuals sorted by gender (m: male, f: female). The genotypes of the mtDNA sites and the Y-chromosomal SNPs show the nucleotide identified at the respective position. The genotypes of Y-chromosomal microsatellites are given as fragment lengths. For mtDNA and Y-chromosomal SNPs exchange positions are indicated according to the mtDNA reference sequence or Embl accession numbers, respectively. For Y-chromosomal microsatellites, simple repeat motifs are shown. Missing genetic data is indicated as “-“.
DOI: 10.5061/dryad.67sj1/2
title: Lundehund1.ped

description: Single nucleotide polymorphism (SNP) raw data files for 17 Lundehund dogs for use with the software PLINK: PED file.
DOI: 10.5061/dryad.67sj1/3
title: Lundehund1.map

description: Single nucleotide polymorphism (SNP) raw data files for 17 Lundehund dogs for use with the software PLINK: MAP file.
DOI: 10.5061/dryad.67sj1/4
title: Lundehund1_information

description: Text file with sample number (FID), individual identification (IID) and sex for 17 Lundehund dogs.
DOI: 10.5061/dryad.6cr82/1
title: DataforDryad_netmaludome

description: Matrix of taxa (bee species) by apple orchard localities in New York (coded alphabetically by size).  Cells in the matrix include the abundance of the bee species collected at each orchard over a period of six years, from 2008-2013.  Bees were net collected on and between apple blossoms.
DOI: 10.5061/dryad.7dg0p/1
title: Raw and processed mating signal data, and processed preference data

description: Data used for tests of signal inheritance and correlation between signal and preference.
DOI: 10.5061/dryad.7dg0p/2
title: Playback signals measured for temporal signal features

description: Playback signals used in experiment, measured for temporal signal features. Column 2 corresponds to the most preferred playback signal based on bayespref individual model prediction in Column 18 of file: achybrid_signal_and_preference.txt
DOI: 10.5061/dryad.7dg0p/3
title: Raw preference data

description: Data used to estimate mate preferences. Archive consists of 6 files that contain the raw counts of responses that individuals made to each playback signal, and includes files for the experimental and preliminary (lab) populations.
DOI: 10.5061/dryad.987j0/1
title: Models for 58 protein families predicted with Rosetta-GREMLIN

description: PDB files, contact maps and images of the predicted protein families. For an interactive version of the data and latest models please see: http://gremlin.bakerlab.org/structures.php
DOI: 10.5061/dryad.dc3m7/1
title: Periostin_Data_Final

description: Periostin data final
DOI: 10.5061/dryad.gr487/1
title: PlosOneTuning_MatlabCode

description: Matlab example code
DOI: 10.5061/dryad.gr487/2
title: RANDPROBEPASGEN_P5
DOI: 10.5061/dryad.gr487/3
title: RANDPROBEPASGEN_P6
DOI: 10.5061/dryad.gr487/4
title: RANDPROBEPASGEN_P4
DOI: 10.5061/dryad.j2r53/1
title: Swenson_Umana_PuertoRico

description: Functional trait data collected from adult trees in the El Yunque National Forest, Puerto Rico. Species names are given as species codes used by the Luquillo LTER.
DOI: 10.5061/dryad.mn17p/1
title: Effect of Bald's eyesalve and its constituent ingredients on S. aureus in vitro and in vivo.

description: Data presented in Figs 2-5 and Fig S1 of Harrison et al, mBio 2015. Each worksheet contains a) raw data and b) annotated R code for a single figure.
DOI: 10.5061/dryad.qg8mb/3
title: Gouli Livestock Diets

description: Raw data on microhistological fragment analyses revealing diets of livestock on study area
DOI: 10.5061/dryad.qg8mb/4
title: Pika diets raw data

description: Micro-histological fragment analyses data on diets of plateau pikas in study area
DOI: 10.5061/dryad.qg8mb/5
title: Pika x livestock interaction effects

description: Statistics and graphics where pika and livestock effects had statistically significant interactions.
DOI: 10.5061/dryad.qn564/1
title: Relative intensity and behavioural data

description: Excel sheet showing relative intensity change of the chosen MeS glomerulus plus control values. Behavioural raw data. Statistics.
DOI: 10.5061/dryad.rs046/1
title: White shark Haplotype Sequences from Northeastern Pacific

description: Nucleotide alignment of Control Region haplotype sequences of white shark from Northeastern Pacific
DOI: 10.5061/dryad.st6h9/10
title: Q80L Overexpression in WT

description: Zipped folder contains Multichannel TIFFs. Explanation of files included as .txt file in Zipped Folder
DOI: 10.5061/dryad.st6h9/11
title: Rab3-GAP Brp Area

description: Zipped folder contains Multichannel TIFFs. Explanation of files included as .txt file in Zipped Folder
DOI: 10.5061/dryad.st6h9/12
title: Switch Region Mutation Brp Distribution Rescue

description: Zipped folder contains Multichannel TIFFs. Explanation of files included as .txt file in Zipped Folder
DOI: 10.5061/dryad.st6h9/13
title: Switch Region Mutation Rab3 Intensity

description: Zipped folder contains Multichannel TIFFs. Explanation of files included as .txt file in Zipped Folder
DOI: 10.5061/dryad.st6h9/5
title: N134I and T35N Brp Distribution Rescue

description: Zipped folder contains Multichannel TIFFs. Explanation of files included as .txt file in Zipped Folder
DOI: 10.5061/dryad.st6h9/6
title: N134I and T35N Rab3 Intensity

description: Zipped folder contains Multichannel TIFFs. Explanation of files included as .txt file in Zipped Folder
DOI: 10.5061/dryad.st6h9/7
title: N134I and T35N DN Phenotype

description: Zipped folder contains Multichannel TIFFs. Explanation of files included as .txt file in Zipped Folder
DOI: 10.5061/dryad.st6h9/8
title: Q80L Brp Distribution Rescue

description: Zipped folder contains Multichannel TIFFs. Explanation of files included as .txt file in Zipped Folder
DOI: 10.5061/dryad.st6h9/9
title: Q80L Rab3 Intensity

description: Zipped folder contains Multichannel TIFFs. Explanation of files included as .txt file in Zipped Folder
DOI: 10.5061/dryad.tm706/1
title: Duffield_terminalinvestment_nuptialfoodgifts

description: Data for the tests of how injection with a non-pathogenic mortality cue mediates the gustatory appeal
DOI: 10.5061/dryad.v51t0/3
title: Percentage of energy (AFDM) in diet

description: Percentage of energy content (AFDM g) in diet of bar-tailed godwits (Limosa lapponica) per month based on observations and dropping analysis. Dataset includes mean burying depth of lugworms (cm), mean bill length (mm) of Dutch Wadden Sea birds only and the mean PEIR (predicted energy intake rate).
DOI: 10.5061/dryad.v51t0/4
title: Bill lengths of first and consequent catches

description: Bill lengths of bar-tailed godwits (Limosa lapponica) at time of first capture and bill lenghts of birds recaptured (&gt; 1 yr).
DOI: 10.5061/dryad.1j3t3/2
title: Auditory Nerve data file 2 (file 2 out of 2)

description: This Matlab MAT file contains single unit electrophysiological data recorded from mouse auditory nerve fibers from a sample of 8 animals.
DOI: 10.5061/dryad.1j3t3/3
title: Cochlear nucleus data file 1 (file 1 out of 8)

description: These Matlab MAT files (8 in total) contain multiunit activity electrophysiological data recorded from the mouse dorsal cochlear nucleus. The data were collected using silicon electrode arrays (with recording sites arranged in 4 shanks with 8 sites per shank) from a population of 8 animals. There is one file for each animal and the file name represents the date the experiment was performed. Each file contains the “data” structured array whose size depends on the number of electrode penetrations performed in each experiment (at least five per animal). For further information contact Dr. Jose A. Garcia Lazaro (jose.garcia-lazaro@ucl.ac.uk).
DOI: 10.5061/dryad.1j3t3/4
title: Cochlear nucleus data file 2 (file 2 out of 8)
DOI: 10.5061/dryad.1j3t3/5
title: Cochlear nucleus data file 3 (file 3 out of 8)
DOI: 10.5061/dryad.1j3t3/6
title: Cochlear nucleus data file 4 (file 4 out of 8)
DOI: 10.5061/dryad.1j3t3/7
title: Cochlear nucleus data file 5 (file 5 out of 8)
DOI: 10.5061/dryad.1j3t3/8
title: Cochlear nucleus data file 6 (file 6 out of 8)
DOI: 10.5061/dryad.1j3t3/9
title: Cochlear nucleus file 7 (file 7 out of 8)
DOI: 10.5061/dryad.1qv0s/1
title: Auld & Houser data
DOI: 10.5061/dryad.26h4v/2
title: CO1 Sanger

description: Sequences of Cytochrome Oxidase subunit I mitochondrial gene generated from examined weevil and leaf beetle species. Alignments prepared for phylogenetic trees reconstructions and Maximum Likelihood trees reconstructed with use of PhyML software.
DOI: 10.5061/dryad.34sv3/2
title: MetabolicRate-June2014

description: 23 columns: (ref): reference line number. (Exp): date of the experiment. (SampleID): field sample ID. (Extract-ID): DNA extraction ID. (Sex): sex of the individual. (Birth): date of emergence of the wasp. (Patch): original patch in Aland. (Age): age of the wasp at measurement. (Weight): weight in mg at measurement. (Behavior): how the wasp behaved during flight experiment. (Death): death date of the wasp. (Wolb): infection status by Wolbachia of the wasp. All remaining data columns: measures of flight and resting metabolic rates.
DOI: 10.5061/dryad.6f1r2/1
title: Supplementary Figure 5
DOI: 10.5061/dryad.6f1r2/2
title: Supplementary Figure 6
DOI: 10.5061/dryad.6q04p/1
title: data1: Body mass data

description: Where; ID = Individual identity; CD = Date captured; MONTH = Month captured; YEAR = Year captured; YFC = Year in which an individual was first caught; WEIGHT = Weight (kg) at the focal capture event; AY = Age in decimal years; SEX =  Sex; SOCG = Social group in which individual was captured at the focal capture event; LENGTH = individuals length (cm) at the focal capture event; NB.SOCG = Number of unique badgers caught within that social group within the current calendar year; DENSITY = Local density of unique badgers captured within the current calendar year; MALE.DENSITY = Local density of adult male badgers captured in the current calendar year; ELDE.ALL = Local density of unique badgers captured within the individuals first year of life; ELDE.CUBS = Local density of unique badger cubs captured within the individuals first year of life; DENS.ALL12 = Local density of unique badgers captured within the individuals first two years of adulthood; DENS.MALE12 = Local density of unique adult male badgers captured within the individuals first two years of adulthood;	DENS.FEMALE12 = Local density of unique adult female badgers captured within the individuals first two years of adulthood; DENS.OR12 = Local sex ratio within the individuals first two years of adulthood; ALC = Age at which an individual was last captured; TERMINAL = binary variable denoting if individuals are in their last year of capture; MDISEASE = bTB status (1 = negative, 2 = exposed)
DOI: 10.5061/dryad.78622/1
title: Condensation of a single chromatin chain in the Type I model

description: The movie shows the full length of simulated chromosome condensation. Nucleosomes are shown as grey spheres, condensin binding sites are in red. If more than two condensin binding sites come within 40 nm of each other, they are highlighted by a yellow sphere to indicate ‘rosette’ formation. Chromatin loops that connect condensin binding sites within rosettes are tinted cyan. A balanced co-existence of rosette and web-like structures in the compacted mitotic stage becomes apparent.
DOI: 10.5061/dryad.78622/2
title: Condensation of a single chromatin chain in the Type II model

description: As previous movie, but the simulation followed the Type II model. Now the rosette-like topologies become dominant and the overall structure is densely packed.
DOI: 10.5061/dryad.78622/3
title: Condensation of two nearby chromatin chains in the Type I model

description: Full length movie of two chromatin chains compacting next to each other using the Type I model are shown, illustrating chain separation during condensation (chain 1, nucleosomes in light blue, condensin binding sties in red; chain 2, nucleosomes in yellow, condensin binding sites in green).
DOI: 10.5061/dryad.78622/4
title: Condensation of two nearby chromatin chains in the Type II model

description: As previous movie, but using the Type II model. The two chromatin chains fail to separate during condensation.
DOI: 10.5061/dryad.79gq3/1
title: FiegnaEvoAssay

description: Table of data from assays of the growth of bacterial isolates over 96 hours. Species gives a number for the focal isolate, mix is the community composition, replicate indicates 3 experimental replicates, diversity is the number of species in the starting culture of the community, environment indicates the growth medium, survival indicates whether the focal isolate could be extracted from the final community or not, sp2 to sp63 indicate which other species were present in the final community, T0 to T96 are the number of cells per ml of each isolate during the growth assays, Div.end is the final number of species recovered from each community.
DOI: 10.5061/dryad.85709/1
title: MyLuSurvival-datadryad

description: encounter histories for marked individuals in the survival study
DOI: 10.5061/dryad.8d0r0/1
title: Insect communities in water-filled tree holes

description: collected in the field
DOI: 10.5061/dryad.9fv56/1
title: population

description: Pooled sequence data with population information.
DOI: 10.5061/dryad.9fv56/2
title: Data point

description: Original data point
DOI: 10.5061/dryad.9fv56/3
title: haplotype

description: Haplotype file
DOI: 10.5061/dryad.b77d0/2
title: Sup_Mat_Garzonetal_syst.bio

description: Supplemental material 1-10
DOI: 10.5061/dryad.c418b/1
title: allele size

description: Multilocus genotypes based on allele size of 474 Myriophyllum individuals in northeast China (NEC) and the Qinghai-Tibetan Plateau (QTP)
DOI: 10.5061/dryad.dv234/1
title: UCDavis Southern California Puma Survival and Mortality Data

description: This dataset represents findings from a telemetry study of pumas in southern California from 2001-2013, and puma mortality data recorded by California Department of Fish and Wildlife and others over the period 1981-2013.
DOI: 10.5061/dryad.gc1jf/1
title: file1. Perpendicular to bedding

description: The table contains series of measurements for Megathrix longus in thin sections perpendicular to the bedding.
DOI: 10.5061/dryad.gc1jf/2
title: file2. Parallel to bedding

description: The table contains series of measurements for Megathrix longus in thin sections parallel to the bedding.
DOI: 10.5061/dryad.gc1jf/3
title: file3. measurements on selected trichomes

description: This table contains measurements on the selected trichomes with consistent diameter (67–70 μm). From these data, we can get the positive linear correlation of complete cross-walls spacing and the intercalated incomplete cross-walls length.
DOI: 10.5061/dryad.gc1jf/4
title: file4. 3D morphological reconstruction

description: This file contains a three-dimensional model of Megathrix longus (after symmetrical cutting along the axis of a trichome).
DOI: 10.5061/dryad.gr487/10
title: RANDPROBEPASGEN15_P4
DOI: 10.5061/dryad.gr487/11
title: RANDPROBEPASGEN15_P3
DOI: 10.5061/dryad.gr487/12
title: RANDPROBEPASGEN15_P2
DOI: 10.5061/dryad.gr487/13
title: RANDPROBEPASGEN15_P1
DOI: 10.5061/dryad.gr487/5
title: RANDPROBEPASGEN_P3
DOI: 10.5061/dryad.gr487/6
title: RANDPROBEPASGEN_P2
DOI: 10.5061/dryad.gr487/7
title: RANDPROBEPASGEN_P1
DOI: 10.5061/dryad.gr487/8
title: RANDPROBEPASGEN15_P6
DOI: 10.5061/dryad.gr487/9
title: RANDPROBEPASGEN15_P5
DOI: 10.5061/dryad.j04mk/1
title: A generalist brood parasite modifies use of a host in response to reproductive success
DOI: 10.5061/dryad.jh2fp/1
title: Structure and PCA dataset

description: Dataset used in STRUCTURE and PCA analyses.
DOI: 10.5061/dryad.jh2fp/2
title: Population tree dataset

description: Concatenated SNP data in phylip format used in population tree analyses
DOI: 10.5061/dryad.jh2fp/3
title: Priors and rules for FastSimCoal2 analyses

description: Priors and rules input file for analyses in FastSimCoal2
DOI: 10.5061/dryad.jh2fp/4
title: Parameters for FastSimCoal2

description: Parameter input file for the coalescence simulation program FastSimCoal2.
DOI: 10.5061/dryad.jh2fp/5
title: Observed site frequency spectrum data

description: Observed site frequency spectrum data used in FastSimCoal2 analyses
DOI: 10.5061/dryad.jh2fp/6
title: FastSimCoal2 results

description: Summary of results from fifty independent parameter estimations in FASTSIMCOAL2 to achieve the maximum composite likelihood of the joint SFS.
DOI: 10.5061/dryad.jh2fp/7
title: Collared pika location

description: Coordinate data used in Maxent simulations