cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7693279
title: Iterative Bleaching Extends Multiplexity (IBEX) Knowledge-Base

description: The Iterative Bleaching Extends Multiplexity (IBEX) imaging method is an iterative immunolabeling and chemical bleaching method that enables highly multiplexed imaging of diverse tissues. Development of the IBEX method and related software was led by Dr. Andrea Radtke and Dr. Ziv Yaniv. IBEX and related methods, Ce3D, Ce3D-IBEX, Opal-plex, were originally developed in the laboratory of Dr. Ronald N. Germain, US National Institutes of Health.The IBEX Imaging Community is an international group of scientists committed to sharing knowledge related to multiplexed imaging in a transparent and collaborative manner. This open, global repository is a central resource for reagents, protocols, panels, publications, software, and datasets. In addition to IBEX, we support standard, single cycle multiplexed imaging (Multiplexed 2D imaging), volume imaging of cleared tissues with clearing enhanced 3D (Ce3D), highly multiplexed 3D imaging (Ce3D-IBEX), and extension of the IBEX dye inactivation protocol to the Leica Cell DIVE (Cell DIVE-IBEX). This dataset contains the current state of knowledge with respect to the IBEX microscopy imaging protocol.How to use the Knowledge-Base:Save a copy to your computer.To find a reagent: Open the reagent_resources.csv file found in the data directory. Use a spreadsheet application to filter the columns based on target name, target species, vendor, etc.To view a complete list of fluorescent probes tested by the IBEX imaging community: Open the fluorescent_probes.csv file. This file reports the spectral properties and inactivation conditions of each fluorescent probe.To import publications cited in the Knowledge-Base, import the publications.bib file found in the data directory to your reference manager.To view a local copy of the website: Open the index.md file found in the docs directory using a markdown editor such as the free Visual Studio Code.To view supporting information for a reagent (images, publications, notes): Open a specific target-conjugate-orcid combination under the docs-supporting_material directory structure using a markdown editor. This can also be visualized from the Reagent Resources page and filtered using a catalog number or other unique identifier in your web browser.Join the online IBEX Imaging community and contribute your knowledge. For more details on how to contribute, see these instructions.This research was supported by:The Intramural Research Program of the NIH, National Institute of Allergy and Infectious Diseases and National Cancer Institute, under grants 1ZIAAI001290-02, 1ZIAAI000545-33, 1ZIAAI000758-24, 1ZIAAI000974-16, 1ZIAAI001034-14. The Wellcome Trust, under grant 224586/Z/21/Z. The National Institute of Allergy and Infectious Diseases, NIH, under grant 1ZIAAI001343-01.
DOI: 10.5281/zenodo.14645972
title: Iterative Bleaching Extends Multiplexity (IBEX) Knowledge-Base

description: The Iterative Bleaching Extends Multiplexity (IBEX) imaging method is an iterative immunolabeling and chemical bleaching method that enables highly multiplexed imaging of diverse tissues. Development of the IBEX method and related software was led by Dr. Andrea Radtke and Dr. Ziv Yaniv. IBEX and related methods, Ce3D, Ce3D-IBEX, Opal-plex, were originally developed in the laboratory of Dr. Ronald N. Germain, US National Institutes of Health.
The IBEX Imaging Community is an international group of scientists committed to sharing knowledge related to multiplexed imaging in a transparent and collaborative manner. This open, global repository is a central resource for reagents, protocols, panels, publications, software, and datasets. In addition to IBEX, we support standard, single cycle multiplexed imaging (Multiplexed 2D imaging), volume imaging of cleared tissues with clearing enhanced 3D (Ce3D), highly multiplexed 3D imaging (Ce3D-IBEX), and extension of the IBEX dye inactivation protocol to the Leica Cell DIVE (Cell DIVE-IBEX). This dataset contains the current state of knowledge with respect to the IBEX microscopy imaging protocol.
How to use the Knowledge-Base:

Save a copy to your computer.
To find a reagent: Open the reagent_resources.csv file found in the data directory. Use a spreadsheet application to filter the columns based on target name, target species, vendor, etc.
To view a complete list of fluorescent probes tested by the IBEX imaging community: Open the fluorescent_probes.csv file. This file reports the spectral properties and inactivation conditions of each fluorescent probe.
To import publications cited in the Knowledge-Base, import the publications.bib file found in the data directory to your reference manager.
To view a local copy of the website: Open the index.md file found in the docs directory using a markdown editor such as the free Visual Studio Code.
To view supporting information for a reagent (images, publications, notes): Open a specific target-conjugate-orcid combination under the docs-supporting_material directory structure using a markdown editor. This can also be visualized from the Reagent Resources page and filtered using a catalog number or other unique identifier in your web browser.

Join the online IBEX Imaging community and contribute your knowledge. For more details on how to contribute, see these instructions.
This research was supported by:

The Intramural Research Program of the NIH, National Institute of Allergy and Infectious Diseases and National Cancer Institute, under grants 1ZIAAI001290-02, 1ZIAAI000545-33, 1ZIAAI000758-24, 1ZIAAI000974-16, 1ZIAAI001034-14.
 The Wellcome Trust, under grant 224586/Z/21/Z.
 The National Institute of Allergy and Infectious Diseases, NIH, under grant 1ZIAAI001343-01.
DOI: 10.15468/dl.gzjah7
title: Occurrence Download

description: A dataset containing 8682 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Falco naumanni J.G.Fleischer, 1818",
 "Year 1900-2025"
 ]
}

 The dataset includes 8682 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068999-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8yssg2
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caloptilia elongella (Linnaeus, 1761)",
 "Year is 2016",
 "Country is Netherlands"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069000-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.qzhr9zn8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1715 records)
DOI: 10.15468/dl.zkvcaq
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caloptilia falconipennella (Hübner, 1813)",
 "Year is 2016",
 "Country is Netherlands"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069001-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.4dyjj37c
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (974 records)
DOI: 10.15468/dl.gkg7ks
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caloptilia fidella (Reutti, 1853)",
 "Year is 2016",
 "Country is Netherlands"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069002-241126133413365/datasets/export for details.
DOI: 10.15468/dl.uzqzyg
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "License is CC-BY 4.0",
 "TaxonKey is Amphibia",
 "Year 2020-2021"
 ]
}

 The dataset includes 37 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069003-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bhdjs
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caloptilia hemidactylella (Denis & Schiffermüller), 1775",
 "Year is 2016",
 "Country is Netherlands"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069005-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28204361
title: Aridity regulated the vital drivers of soil organic carbon content in Northeast China

description: The attached data are used as the original support for the research submission.
DOI: 10.15468/dl.xsfcx5
title: Occurrence Download

description: A dataset containing 10992 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vertebrata fucoides (Huds.) Kuntze"
 ]
}

 The dataset includes 10992 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069004-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3b7qt
title: Occurrence Download

description: A dataset containing 794295 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Celypha striana (Denis & Schiffermüller), 1775, Chionodes electella (Zeller, 1839), Chrysoteuchia culmella Linnaeus, 1758, Clostera pigra (Hufnagel, 1766), Cnephasia incertana (Treitschke, 1835), Cnephasia stephensiana (Doubleday, 1850), Coleophora flavipennella (Duponchel, 1843), Coleophora lutipennella Zeller, 1838, Colotois pennaria (Linnaeus, 1761), Conistra erythrocephala (Denis & Schiffermüller), 1775, Cosmia trapezina (Linnaeus, 1758), Crocallis elinguaria (Linnaeus, 1758), Cucullia umbratica (Linnaeus, 1758), Cymatophorina diluta (Denis & Schiffermüller), 1776, Dioryctria abietella (Denis & Schiffermüller), 1775)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 794295 records from 742 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068975-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14639218
title: Resting state fMRI human data of 22q11.2 deletion carriers (Alvino et al., 2024)

description: Resting state fMRI data from human cohort described in Alvino et al. (2024). Data has been preprocessed as described here: https://doi.org/10.1101/2024.03.29.587339. 

In the filename, 'HC' denotes control participants, whereas 'DEL' denotes 22q11DS carriers. 'CHILDREN' or 'ADULT' correspond to 'children' and 'peri/post-pubertal' groups respectively, as described in the preprint. The number of participants in each group is described in the table below. 




 
22q11DS
HC


Children
21
31


Post-pubertal 
118
86
DOI: 10.5281/zenodo.14639219
title: Resting state fMRI human data of 22q11.2 deletion carriers (Alvino et al., 2024)

description: Resting state fMRI data from human cohort described in Alvino et al. (2024). Data has been preprocessed as described here: https://doi.org/10.1101/2024.03.29.587339. 

In the filename, 'HC' denotes control participants, whereas 'DEL' denotes 22q11DS carriers. 'CHILDREN' or 'ADULT' correspond to 'children' and 'peri/post-pubertal' groups respectively, as described in the preprint. The number of participants in each group is described in the table below. 




 
22q11DS
HC


Children
21
31


Post-pubertal 
118
86
DOI: 10.15468/dl.ygehwb
title: Occurrence Download

description: A dataset containing 955 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sciurus niger shermani Moore, 1956"
 ]
}

 The dataset includes 955 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069007-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79brgx
title: Occurrence Download

description: A dataset containing 865 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Libidibia punctata (Willd.) Britton",
 "Year 1901-2025"
 ]
}

 The dataset includes 865 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069006-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q4uhfm
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caloptilia populetorum (Zeller, 1839)",
 "Year is 2016",
 "Country is Netherlands"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069008-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60520/ieda/113641
title: Clumped isotope data of 8 karst filling speleothem from Gaspésie, Québec Canada

description: This dataset includes D47, d18O and d13C data from 8 karst filling speleothem from Gaspésie, Québec Canada. Replicate level are provided for data reprocessing purposes.
description: N. Pinet; D. Petts; JJ. Jautzy; W. Davis; S. Larmagnat, (submitted 2024) Direct dating of a laminated speleothem coating a karst wall in southeastern Gaspé Peninsula, Quebec, Canada: Carboniferous, not Silurian. Canadian Journal of Earth Sciences
DOI: 10.15468/dl.8vpha9
title: Occurrence Download

description: A dataset containing 291 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleioblastus amarus (Keng) Keng f."
 ]
}

 The dataset includes 291 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069009-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cyj5ax
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caloptilia robustella Jäckh, 1972",
 "Year is 2016",
 "Country is Netherlands"
 ]
}

 The dataset includes 105 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069010-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mu2uxc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caloptilia rufipennella (Hübner, 1796)",
 "Year is 2016",
 "Country is Netherlands"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069011-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/03e9e2af-904e-4949-ac10-c5721fd6e0f1
title: Data underlying publication: Spinach Seed Microbiome Characteristics Linked to Suppressiveness Against Globisporangium ultimum Damping-Off

description: Recently we demonstrated that the seed microbiome of certain spinach (<em>Spinacia oleracea</em>) seed lots can confer disease suppression against <em>Globisporangium ultimum</em> damping-off (previously known as <em>Pythium</em> <em>ultimum</em>). We hypothesised that differences in the microbial community composition of spinach seed lots correlate with the levels of damping-off suppressiveness of each seed lot. Here, we show that a large proportion of variance in seed-associated bacterial (16S) and fungal (ITS1) amplicon sequences was explained by seed lot identity, while 9.8 % of bacterial and 7.1 % of fungal community variance correlated with disease suppression. More specifically, a higher relative abundance of basidiomycetous dimorphic yeasts such as <em>Vishniacozyma</em>, <em>Filobasidium</em> and <em>Papiliotrema</em> and of the bacterial genus <em>Massilia</em> was a key feature of suppressive seed microbiomes. We suggest that the abundance of these genera is indicative of seed lot suppressive potential. Seed processing and treatment can become more targeted with indicator taxa being used to evaluate the presence of beneficial seed-associated microbial functions. This process in turn could contribute to the sustainable management of seedling diseases. Finally, this study highlights the ubiquity of yeasts in spinach seed microbiota and their potential beneficial roles for seed health.<br>
DOI: 10.15468/dl.9hu2s4
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caloptilia stigmatella (Fabricius, 1781)",
 "Year is 2016",
 "Country is Netherlands"
 ]
}

 The dataset includes 71 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069012-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63vtqb
title: Occurrence Download

description: A dataset containing 61166 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Furcellaria lumbricalis (Hudson) J.V.Lamouroux"
 ]
}

 The dataset includes 61166 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069013-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6vpqv2
title: Occurrence Download

description: A dataset containing 408 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pongo abelii Lesson, 1827"
 ]
}

 The dataset includes 408 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069014-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxmsed
title: Occurrence Download

description: A dataset containing 408 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pongo abelii Lesson, 1827"
 ]
}

 The dataset includes 408 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069015-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48436/fy5dd-tq043
title: Celestial reference frame 2023 from VGOS sessions

description: Context and methodology

Celestial reference frame estimated from Very Long Baseline Interferometry VGOS-OPS and VGOS-R&D sessions.
Technical details

GENERATION TIME:  2024-02-03T18:59:32
DATA START:  2017-12-03T00:00:00
DATA END:  2023-12-28T00:00:00
ANALYSIS CENTER:  VIE (TU Wien, Austria)
CONTACT:   hana.krasna@tuwien.ac.at
SOFTWARE:  VieVS v3.2
TECHNIQUE:  VLBI
FREQUENCY BANDS: VGOS
FORMAT: ICRF
DOI: 10.48436/m6j36-s1082
title: Celestial reference frame 2023 from VGOS sessions

description: Context and methodology

Celestial reference frame estimated from Very Long Baseline Interferometry VGOS-OPS and VGOS-R&D sessions.
Technical details

GENERATION TIME:  2024-02-03T18:59:32
DATA START:  2017-12-03T00:00:00
DATA END:  2023-12-28T00:00:00
ANALYSIS CENTER:  VIE (TU Wien, Austria)
CONTACT:   hana.krasna@tuwien.ac.at
SOFTWARE:  VieVS v3.2
TECHNIQUE:  VLBI
FREQUENCY BANDS: VGOS
FORMAT: ICRF
DOI: 10.15468/dl.tc6c57
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caloptilia suberinella (Tengström, 1848)",
 "Year is 2016",
 "Country is Netherlands"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069017-241126133413365/datasets/export for details.
DOI: 10.15468/dl.hkwhsf
title: Occurrence Download

description: A dataset containing 10932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Procyon lotor (Linnaeus, 1758)",
 "Year 2020-2025"
 ]
}

 The dataset includes 10932 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069016-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsr968
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Gomphichis traceyae Rolfe"
 ]
}

 The dataset includes 178 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069018-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exanqx
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.05446 4.59472,-75.97146 4.59472,-75.97146 4.62793,-76.05446 4.62793,-76.05446 4.59472))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0147817-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qc9fx4
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.25_1",
 "TaxonKey is Uroxys pauliani Balthasar, 1940",
 "Year 1000-2010"
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0330723-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.