cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8127408
title: Codon similarity data in ATTED-II ver 8.0 (Bra, Mtr)

description: Codon similarity data in ATTED-II ver 8.0 The gene-to-gene codon similarity data is organized in the form of tables, each named according to the Entrez Gene ID of a particular query gene. Each table encompasses three columns, specifying: the Entrez Gene ID of a corresponding gene, an MR (Mutual Rank) value (where a smaller number signifies a stronger relationship), and a Pearson correlation coefficient (where a larger number suggests a stronger association). Protein-coding sequences utilized in this study were retrieved from NCBI's RefSeq database. For each gene, a 61-dimensional vector was derived from the count of codons in the protein-coding sequence. In instances where multiple RefSeq sequences were associated with a single gene, the longest sequence was selected for the codon usage calculation. Pearson correlation coefficients (PCCs) were determined between the vectors of any two given genes. These PCCs were subsequently converted into MRs, employed as an index to evaluate the similarity in codon usage between the genes.
description: {"references": ["Aoki Y, Okamura Y, Tadaka S, Kinoshita K, Obayashi T. (2016) ATTED-II in 2016: a plant coexpression database towards lineage-specific coexpression. Plant Cell Physiology, 57, e5."]}
DOI: 10.5281/zenodo.8127407
title: Codon similarity data in ATTED-II ver 8.0 (Bra, Mtr)

description: Codon similarity data in ATTED-II ver 8.0 The gene-to-gene codon similarity data is organized in the form of tables, each named according to the Entrez Gene ID of a particular query gene. Each table encompasses three columns, specifying: the Entrez Gene ID of a corresponding gene, an MR (Mutual Rank) value (where a smaller number signifies a stronger relationship), and a Pearson correlation coefficient (where a larger number suggests a stronger association). Protein-coding sequences utilized in this study were retrieved from NCBI's RefSeq database. For each gene, a 61-dimensional vector was derived from the count of codons in the protein-coding sequence. In instances where multiple RefSeq sequences were associated with a single gene, the longest sequence was selected for the codon usage calculation. Pearson correlation coefficients (PCCs) were determined between the vectors of any two given genes. These PCCs were subsequently converted into MRs, employed as an index to evaluate the similarity in codon usage between the genes.
description: {"references": ["Aoki Y, Okamura Y, Tadaka S, Kinoshita K, Obayashi T. (2016) ATTED-II in 2016: a plant coexpression database towards lineage-specific coexpression. Plant Cell Physiology, 57, e5."]}
DOI: 10.5517/ccdc.csd.cc2dxj3z
title: CCDC 2231941: Experimental Crystal Structure Determination

description: Related Article: Akram Hussain, Dhevalapally B. Ramachary|2023|J.Org.Chem.|88|8069|doi:10.1021/acs.joc.3c00070
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dxj40
title: CCDC 2231942: Experimental Crystal Structure Determination

description: Related Article: Akram Hussain, Dhevalapally B. Ramachary|2023|J.Org.Chem.|88|8069|doi:10.1021/acs.joc.3c00070
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7583327
title: The propagation of gravity waves in Titan's stratosphere

description: The model code and figure data of our article "The propagation of gravity waves in Titan's stratosphere". GW-simulation-program.txt is the Mathematica code used to simulate gravity wave propagation. simulations-nowind.rar and simulations-wind.rar are the simulation results for gravity wave with its horizontal propagation direction perpendicular or not perpendicular to the background wind, respectively. FigureData.rar contains several data files for figures in our article.
DOI: 10.5066/p9jf1exh
title: PFAS Reconnaissance Landscape Data

description: This dataset consists of summary data for potential landscape sources of per- and poly-fluoroalkyl substances (PFAS). These summary items include facilities from the Environmental Protection Agency (EPA) PFAS Analytics Tools, which were pulled from its Enforcement and Compliance History Online (ECHO), areas affected by fires (burned and urban burned areas) from Monitoring Trends in Burn Severity (MTBS), and landcover data from National Land Cover Dataset (NLCD) and Coastal Change Analysis Portal (C-CAP) around sites sampled as part of a National PFAS Tapwater Reconnaissance. These data are presented as a comma separated file, which includes summaries for all variables listed within a 5-kilometer buffer around each site, with an additional summary of burn areas within a 50-kilometer buffer. The purpose of this effort is to identify and quantify PFAS in drinking water sources at the point-of-use across the United States (US) and these data will be used to identify potential landscape-scale drivers of PFAS contamination in US tapwater (TW).
DOI: 10.6084/m9.figshare.22583947.v2
title: Competition between pink muhly grass and native plant species: is it really a harmful invasive species?

description: This dataset is about the paper, entitled as "Competition between pink muhly grass and native plant species: is it really a harmful invasive species?", published in the Ecosphere journal. <br> Abstract: 1. Pink muhly grass (<em>Muhlenbergia capillaris </em>Trin.) is an exotic species to South Korea and is popular worldwide as an ornamental grass for landscaping purposes. The Ministry of Environment in South Korea has categorized this species as an “Ecosystem Hazard Class 2” plant, requiring long-term monitoring to assess its ecological impacts on native species and communities. 2. In this study, a 2-year greenhouse experiment was conducted using <em>M. capillaris</em> and 17 native plant species (six annuals, eight non-woody perennials and three woody perennials) to test the hypothesis that if <em>M. capillaris </em>is an invasive species, it will negatively affect the establishment and growth of native plants in competitive pairings compared with controls (native species grown in monoculture). 3. Results showed that the mean canopy cover of native plants in competition with <em>M. capillaris </em>was not significantly different from monocultures of the corresponding native species (<em>F</em>1,98 = 2.35; <em>P </em>= 0.129). There were also no significant differences (<em>F</em>1,98 = 1.17; <em>P </em>= 0.280) in mean aboveground biomass production between native species growing with <em>M. capillaris </em>compared to corresponding native monocultures. 4. Results indicate that <em>M. capillaris </em>did not significantly affect establishment and growth of the 17 native species investigated. The minimal impacts suggest that <em>M. capillaris </em>may not be a harmful invasive species, but further monitoring of its spread will be required to test these findings under natural conditions.
DOI: 10.6084/m9.figshare.3479141
title: Organisation Identifiers - Minimum viable product requirements

description: This document sets out a number of use cases for organisational identifiers, from the perspective of three PID providers that are also ‘consumers’ of organisation identifiers: Crossref, DataCite and ORCID. The document draws together the products of several studies, working groups and reports on the topic of organisation identifiers. It summarises the key observations and recommendations from these reports and combines them into a single list of top level requirements for a ‘minimum viable product’ to address the defined needs of the scholarly communications and related communities for organisation identifiers.<br>
DOI: 10.17632/d62m58zt2t.1
title: graphene-MoS2-Au

description: VASP and experimental data for MoS2-graphene Heterostructures and MoS2-graphene-Au Heterointerfaces. The computational data includes structural information, electronic and optical properties, and data to calculate the work functions for various molybdenum disulfide and graphene heterostructures and their heterointerfaces with gold. The optical properties calculations include the frequency-dependent dielectric function, the refractive index, the reflectivity, the extinction coefficient, and the energy loss function. These properties were calculated using the independent particle approximation (IPA). As for the experimental optoelectronic properties, we measured photoluminescence spectra (optical), Raman spectra (vibrational), work function (surface electronic property), and local photoconductivity (semiconducting behavior) of graphene-MoS2 heterointerfaces in addition to individual graphene and MoS2 layers on gold. The variation in exciton bands, Raman bands, average work function elucidated the semiconducting n-p junction behavior.
DOI: 10.48786/edbt.2023.06
title: Relational Memory: Native In-Memory Accesses on Rows and Columns
DOI: 10.5066/p990s43l
title: Evaluating regulations and surveillance as risk-mitigation to the emerging amphibian pathogen Bsal- Data release

description: Results of a literature search performed December 1, 2020. The tables in this document summarize the publications fitting in this search criteria and are split into the publications that update the list of international species that could carry Bsal (Appendix 1 Table S1). Number of individual live amphibians imported in categories of urodelan (salamander, newt, and related taxa) species restricted under the interim regulations and not listed, species not listed on the regulations that have had Bsal detected, notably Bombina spp., anuran species in the genus Rana, and Xenopus (including African clawed frogs) as a comparison of species not thought to be susceptible to Bsal, but commonly imported (Appendix 3 Table S1). Data and relative risk scores per county used for the risk analysis of B. salamandrivorans invasion, consequences, and surveillance for U.S. salamanders. All variables were scaled from 1, lowest relative risk, to 4, highest relative risk. Import and introduction risk scores were calculated from the average live imports per year for the pre-action risk period (2010-2015) and post-action risk period (2016-2019) (Appendix S3 Table S2).
DOI: 10.6084/m9.figshare.827292
title: Data for "Preference patterns for skewed gambles in rhesus monkeys"

description: Data for the paper, "Preference patterns for skewed gambles in rhesus monkeys."
DOI: 10.17632/f2gj2j2w57.1
title: LA INNOVACIÓN INCREMENTAL EN SALUD EN ESPAÑA DURANTE LA PANDEMIA DE LA COVID-19

description: Modelos de utilidad de la clase A61, periodo2018-2019 y 2020-2021
DOI: 10.6084/m9.figshare.23650512
title: <strong>Table X. </strong><em>f</em><sup><em>2</em></sup> Effect Sizes

description: Effect size <em>f</em><sup><em>2</em></sup> in MSB.IS model.
DOI: 10.34740/kaggle/dsv/6103616
title: Amazon Product Reviews for Defect Analysis
DOI: 10.5281/zenodo.8111618
title: Biblioteca H-BIM de objetos genéricos: Objetos genéricos para claustros serlianos. O caso dos conventos de Lisboa.

description: Biblioteca Heritage-BIM e respetivos objetos genéricos necessários à elaboração da mesma. Os elementos disponibilizados fazem parte do trabalho desenvolvido em tese de doutoramento no Instituto Superior Técnico da Universidade de Lisboa: "Património Digital de Património Arquitetónico: Diretrizes para uma documentação através de biblioteca Heritage-BIM constituida por objetos genéricos patrimoniais. Os claustros serlianos da arquitetura conventual lisboeta como caso de estudo". Biblioteca genérica H-BIM constituída por: − Ala de claustro serliano estrutural puro (ClaustroAla_Pedra_SerlianoEstrutural_Puro.rfa) − Ala de claustro serliano estético de vão aberto (HBIM_ClaustroAla_Pedra_SerlianoEstetico_VaoAberto.rfa). − Pilar em pedra de secção retangular (HBIM_Pilar_Pedra_Retangular.rfa); − Pilar em pedra de fecho de secção retangular (HBIM_Pilar_Pedra_Retangular_Fecho.rfa); − Pilar em pedra de secção retangular de vão aberto (HBIM_Pilar_Pedra_Retangular_VaoAberto.rfa); − Lintel em pedra (HBIM_ Lintel_Pedra.rfa); − Lintel em pedra de fecho (HBIM_Lintel_Pedra_Fecho.rfa); − Arco em pedra de secção semicircular (HBIM_Arco_Pedra_Semicircular.rfa); − Arranjo em pedra sobre arco semicircular (HBIM_Arranjo_Pedra_Arco_Semicircular.rfa); − Painel (HBIM_Painel.rfa). Biblioteca H-BIM constituída por: - Claustro do convento de Nossa Senhora da Graça (HBIM_Conv_NSGraca_Lisboa.rvt); - Claustro do convento do Santíssimo Sacramento (HBIM_Conv_SSacramento_Lisboa.rvt) - Claustro do convento São Domingos de Benfica (HBIM_Conv_SDBenfica_Lisboa.rvt) - Claustro do Mosteiro de São Bento da Saúde (HBIM_Conv_SBentoSaude_Lisboa.rvt) Trabalho financiado pela FCT: bolsa SFRH/BD/100181/2014.
DOI: 10.5281/zenodo.8111617
title: Biblioteca H-BIM de objetos genéricos: Objetos genéricos para claustros serlianos. O caso dos conventos de Lisboa.

description: Biblioteca Heritage-BIM e respetivos objetos genéricos necessários à elaboração da mesma. Os elementos disponibilizados fazem parte do trabalho desenvolvido em tese de doutoramento no Instituto Superior Técnico da Universidade de Lisboa: "Património Digital de Património Arquitetónico: Diretrizes para uma documentação através de biblioteca Heritage-BIM constituida por objetos genéricos patrimoniais. Os claustros serlianos da arquitetura conventual lisboeta como caso de estudo". Biblioteca genérica H-BIM constituída por: − Ala de claustro serliano estrutural puro (ClaustroAla_Pedra_SerlianoEstrutural_Puro.rfa) − Ala de claustro serliano estético de vão aberto (HBIM_ClaustroAla_Pedra_SerlianoEstetico_VaoAberto.rfa). − Pilar em pedra de secção retangular (HBIM_Pilar_Pedra_Retangular.rfa); − Pilar em pedra de fecho de secção retangular (HBIM_Pilar_Pedra_Retangular_Fecho.rfa); − Pilar em pedra de secção retangular de vão aberto (HBIM_Pilar_Pedra_Retangular_VaoAberto.rfa); − Lintel em pedra (HBIM_ Lintel_Pedra.rfa); − Lintel em pedra de fecho (HBIM_Lintel_Pedra_Fecho.rfa); − Arco em pedra de secção semicircular (HBIM_Arco_Pedra_Semicircular.rfa); − Arranjo em pedra sobre arco semicircular (HBIM_Arranjo_Pedra_Arco_Semicircular.rfa); − Painel (HBIM_Painel.rfa). Biblioteca H-BIM constituída por: - Claustro do convento de Nossa Senhora da Graça (HBIM_Conv_NSGraca_Lisboa.rvt); - Claustro do convento do Santíssimo Sacramento (HBIM_Conv_SSacramento_Lisboa.rvt) - Claustro do convento São Domingos de Benfica (HBIM_Conv_SDBenfica_Lisboa.rvt) - Claustro do Mosteiro de São Bento da Saúde (HBIM_Conv_SBentoSaude_Lisboa.rvt) Trabalho financiado pela FCT: bolsa SFRH/BD/100181/2014.
DOI: 10.6084/m9.figshare.23650515
title: <strong>Table XI. </strong>Decomposition of the explained variance of the endogenous latent variable SR

description: Decomposition of the explained variance of the endogenous latent variable SR in MSB.IS HCM model.
DOI: 10.6084/m9.figshare.23650515.v1
title: <strong>Table XI. </strong>Decomposition of the explained variance of the endogenous latent variable SR

description: Decomposition of the explained variance of the endogenous latent variable SR in MSB.IS HCM model.
DOI: 10.6084/m9.figshare.23650536
title: <strong>Table XII. </strong>Measurement model invariance: the MICOM procedure

description: MICOM (Measurement Invariance of Composite Models) procedure application in MSB.IS HCM model.
DOI: 10.6084/m9.figshare.23650542.v1
title: <strong>Table XIII. </strong>Multi-group analysis

description: Application of the different approaches to multi-group analysis: Permutation test, PLS-MGA, Parametric test, and Welch-Satterthwaite t-test.
DOI: 10.6084/m9.figshare.23650542
title: <strong>Table XIII. </strong>Multi-group analysis

description: Application of the different approaches to multi-group analysis: Permutation test, PLS-MGA, Parametric test, and Welch-Satterthwaite t-test.
DOI: 10.6084/m9.figshare.23650581
title: Distribution of bacterial taxa under the phyla and genera levels of the control (A) and the niacin group (B) (as a percentage of the total sequence).

description: Microbiology and metabolomics
DOI: 10.6084/m9.figshare.23650581.v1
title: Distribution of bacterial taxa under the phyla and genera levels of the control (A) and the niacin group (B) (as a percentage of the total sequence).

description: Microbiology and metabolomics
DOI: 10.34740/kaggle/dsv/6104006
title: Egypt Gold Prices | Daily Updated
DOI: 10.17179/excli2023-6237/supplementary_data
title: Intraperitoneal hepato-renal toxicity of zinc oxide and nickel oxide nanoparticles in male rats: biochemical, hematological and histopathological studies

description: In recent years, zinc oxide (ZnO) and nickel oxide (NiO) nanoparticles (NPs) have become more prevalent in commercial and industrial products. However, questions have been raised regarding their potential harm to human health. Limited studies have been conducted on their intraperitoneal toxicity in rats, and their co-exposure effects remain uncertain. Therefore, this study aimed to investigate some biological responses induced by a single intraperitoneal injection of ZnO-NPs (200 mg/kg) and/or NiO-NPs (50 mg/kg) in rats over time intervals. Blood and organ samples were collected from 36 male rats for hematological, biochemical, oxidative stress, and histological analysis. Results showed that the administration of NPs reduced the body and organ weights as well as red blood cell (RBC) indices and altered white blood cell (WBC) and platelet (PLT) counts. The experimental groups exhibited elevated levels of aspartate aminotransferase (AST), alanine transaminase (ALT), creatinine (CREA), urea, lipid profile, glucose (GLU), total protein (TP), albumin (ALB) and malondialdehyde (MDA), and decreased uric acid (UA), superoxide dismutase (SOD), and glutathione (GSH). Histological observations also revealed architectural damages in liver and kidneys. These alterations were time-dependent and varied in their degree of toxicity. Co-exposure of NPs initially lessened the damage but increased it afterwards compared to individual exposure. In conclusion, intraperitoneal injection of ZnO-NPs and/or NiO-NPs alters biological processes and induces oxidative stress in rats’ liver and kidneys in a time-dependent manner, with NiO-NPs being more potent than ZnO-NPs. Furthermore, co-exposed NPs initially appeared to be antagonistic to one another while further aiming toward synergism.
description: EXCLI Journal; 22:Doc619; ISSN 1611-2156
DOI: 10.5281/zenodo.8127637
title: LPS's over Bay of Bengal and TC's over West North Pacific (WNP) simulated in the CESM 1.2 WNP SST warming experiment

description: This repository contains the dataset as explained below: 1) This dataset contains low-pressure systems (LPS) tracks over the Bay of Bengal (BoB) and West North Pacific (WNP) tropical cyclones (TCs) simulated in CESM 1.2 WNP SST warming experiment conducted by Srujan and Sandeep (2023) submitted to Nature Geosciences. The LPS and TCs are tracked from mean sea level pressure (MSLP) using the algorithm developed by Praveen et al. (2015). The file names start with "<strong>cyc_</strong>". This will be useful for reproducing Fig. 1 and Fig. A2 2) The data helps reproduce the Heating rate due to the moist process (Fig. 2) starts with "<strong>DT_</strong>" 3) The data helps reproduce the propagation of rossbywave (Fig. 3) starting with "<strong>regcof_</strong>" 4) The data helps reproduce the input SST pattern (Fig. A1) starting with "<strong>sst_</strong>" 5) The data helps reproduce the Hovmuller plot (Fig. A3) starting with "<strong>comp_</strong>" 6) The data helps reproduce the lag1 mslp anomaly (Fig. A4) starting with "<strong>slpcomp_</strong>" <strong>References:</strong> Praveen, V., Sandeep, S., & Ajayamohan, R. S. (2015). <strong>On the relationship between mean monsoon precipitation and low pressure systems in climate model simulations</strong>. <em>Journal of Climate</em>, <em>28</em>(13), 5305-5324.
DOI: 10.5281/zenodo.8127636
title: LPS's over Bay of Bengal and TC's over West North Pacific (WNP) simulated in the CESM 1.2 WNP SST warming experiment

description: This repository contains the dataset as explained below: 1) This dataset contains low-pressure systems (LPS) tracks over the Bay of Bengal (BoB) and West North Pacific (WNP) tropical cyclones (TCs) simulated in CESM 1.2 WNP SST warming experiment conducted by Srujan and Sandeep (2023) submitted to Nature Geosciences. The LPS and TCs are tracked from mean sea level pressure (MSLP) using the algorithm developed by Praveen et al. (2015). The file names start with "<strong>cyc_</strong>". This will be useful for reproducing Fig. 1 and Fig. A2 2) The data helps reproduce the Heating rate due to the moist process (Fig. 2) starts with "<strong>DT_</strong>" 3) The data helps reproduce the propagation of rossbywave (Fig. 3) starting with "<strong>regcof_</strong>" 4) The data helps reproduce the input SST pattern (Fig. A1) starting with "<strong>sst_</strong>" 5) The data helps reproduce the Hovmuller plot (Fig. A3) starting with "<strong>comp_</strong>" 6) The data helps reproduce the lag1 mslp anomaly (Fig. A4) starting with "<strong>slpcomp_</strong>" <strong>References:</strong> Praveen, V., Sandeep, S., & Ajayamohan, R. S. (2015). <strong>On the relationship between mean monsoon precipitation and low pressure systems in climate model simulations</strong>. <em>Journal of Climate</em>, <em>28</em>(13), 5305-5324.
DOI: 10.34740/kaggle/dsv/6104101
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.25345/c5gf0n64t
title: MassIVE MSV000092383 - Site-specific glycoproteomic modifications are associated with cognitive decline in type 2 diabetes in older adults
title: Type 2 diabetes (T2D) is a metabolic disorder associated with cognitive decline and an increased risk of dementia. The molecular mechanisms linking T2D to cognitive decline remain unclear. Here, we investigated site-specific glycoproteomic modifications as potential contributors to cognitive decline in older adults with T2D. We analyzed protein glycosylation using mass spectrometry-based glycoproteomics in serum samples from cognitively normal T2D patients and cognitively declined T2D patients. Our results reveal quantitative changes in glycopeptiforms, specific glycan compositions on amino acid sites of proteins, associated with cognitive decline in T2D. Notably, we observed alterations in glycosylation versus glycation patterns in the cognitively declined group. These findings suggest that aberrant protein glycosylation may play a role in the development of cognitive impairment in T2D. Our study provides valuable insights into the molecular mechanisms underlying cognitive decline in T2D and highlights the potential of glycoproteomic modifications as biomarkers for early identification of cognitive decline in T2D patients. Further research is warranted to elucidate the functional implications
DOI: 10.6084/m9.figshare.23650551
title: Cashew Env. Dataset.csv

description: The dataset has remote sensing from POWER|DAVe, MODIS, MoFA (Crop production), GMet (Environmental Parameters)
DOI: 10.5281/zenodo.8127693
title: Guppy brain small RNA library prep

description: Library preparation data
DOI: 10.5281/zenodo.8127692
title: Guppy brain small RNA library prep

description: Library preparation data