cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3645647_d2
title: Additional file 2: of Difference in blood pressure between early and late menopausal transition was significant in healthy Korean women

description: Subject characteristics according to hypertensive status. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3645725_d2
title: Additional file 9: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Additional cytokine sequences identified in the Tasmanian devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * = partial Ensembl prediction. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3645725_d3
title: Additional file 7: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Interferon sequences identified in the Tasmanian devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * indicates a gene which is not a direct ortholog of a eutherian gene, ** = partial Ensembl prediction. (CSV 564 bytes)
DOI: 10.6084/m9.figshare.c.3645725_d4
title: Additional file 8: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: TNF family sequences identified in the devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * indicates a gene which is not a direct ortholog of a eutherian gene, ** = partial Ensembl prediction. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3645725_d5
title: Additional file 1: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Accession numbers for all data used in this study. Description of data: Table including accession numbers for the genomes, transcriptomes and sequences used in phylogenies in this study. (CSV 3 kb)
DOI: 10.6084/m9.figshare.c.3645725_d6
title: Additional file 11: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: TCR constant regions identified in the Tasmanian devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * = partial Ensembl prediction. (CSV 864 bytes)
DOI: 10.6084/m9.figshare.c.3645725_d7
title: Additional file 3: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Presence of Tasmanian devil sequences identified in this study in the devil transcriptomes. (CSV 957 bytes)
DOI: 10.6084/m9.figshare.c.3645725_d8
title: Additional file 2: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Interleukin sequences identified in the Tasmanian devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * indicates a gene which is not a direct ortholog of a eutherian gene, ** = partial Ensembl prediction. (CSV 3 kb)
DOI: 10.6084/m9.figshare.c.3645725_d10
title: Additional file 5: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Chemokine sequences identified in the Tasmanian devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * indicates a gene which is not a direct ortholog of a eutherian gene, ** = partial Ensembl prediction. (CSV 3 kb)
DOI: 10.6084/m9.figshare.c.3645725_d11
title: Additional file 10: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Immunoglobulin heavy and light chain constant regions identified in the Tasmanian devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * = partial Ensembl prediction. (CSV 599 bytes)
DOI: 10.6084/m9.figshare.c.3645728_d2
title: Additional fileÂ 2: of A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages

description: Gene annotation of the R2 locus in potato ( S. tuberosum genotypes RH089-039-16, HB171(13), DM1-3 516R44) and tomato (S. lycopersicum cv. Heinz 1706). For each scaffold/BAC clone are indicated: linkage phase, genotype of affiliation, GenBank accession (where available), description of the product and EST accession (from the SolEST database). Manual annotation of DM0-3 516R44 and Tomato cv. Heinz were compared to the automated annotation and no relevant differences were identified. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3645728_d4
title: Additional file 3: of A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages

description: Microsyntenic blocks between potato (RH-H0 haplotype) and tomato annotations. Microsyntenic proteins (same function, location and orientation) are lined up in the same row. Proteins shaded in grey are included in resistance clusters and cannot be directly compared because of fractioned synteny [45]. Putative transposable elements are shaded in red. Microsyintenic blocks are framed. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3645728_d3
title: Additional file 4: of A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages

description: Summary table of the number of R gene homologues identified at the R2 region. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3645728_d5
title: Additional file 5: of A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages

description: Gene conversion events identified among R2GHs in RH, DM and HB, and among R2GHs in Solanum wild species. Gene conversions were visually identified or using the program Genconv [33]. A number was attributed to each event. For each gene conversion event are indicated details on the involved sequence pairs, position, size and Ď  value. (XLSX 360 kb)
DOI: 10.6084/m9.figshare.c.3645731_d1
title: Additional file 2: of CD80 down-regulation is associated to aberrant DNA methylation in non-inflammatory colon carcinogenesis

description: Dataset for CD80 and methylation privacyR3. (XLS 48Â kb)
DOI: 10.6084/m9.figshare.c.3645836_d4
title: Additional file 3: Table S1. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

description: Significant SNP markers (FDR
DOI: 10.6084/m9.figshare.c.3645836_d6
title: Additional file 10: Table S3. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

description: Significant SNP markers (FDR
DOI: 10.6084/m9.figshare.c.3645836_d10
title: Additional file 4: Table S2. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

description: Significant SNP markers (FDR
DOI: 10.6084/m9.figshare.c.3645839_d1
title: Additional file 4: of Genetic and morphological evidence for introgression between three species of willows

description: Q -values with K = 2 (STRUCTURE) and posterior probabilities (NewHybrids). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3645839_d2
title: Additional file 6: of Genetic and morphological evidence for introgression between three species of willows

description: Morphological characters used to classify species as S. dasyclados, S. schwerinii or S. viminalis. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3645839_d5
title: Additional file 2: of Genetic and morphological evidence for introgression between three species of willows

description: H O and H E and test of Hardy-Weinberg equilibrium for every marker for S. schwerinii and S. viminalis separately. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3645839_d4
title: Additional file 1: of Genetic and morphological evidence for introgression between three species of willows

description: Collected samples and classification. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3645842_d1
title: Additional file 2: Table S2. of Transcriptome analysis of Sporisorium scitamineum reveals critical environmental signals for fungal sexual mating and filamentous growth

description: List of DEGs (p ≤ 0.05) in the SsΔMAT-1b mutant compared to the wild-type MAT-1. (XLS 396 kb)
DOI: 10.6084/m9.figshare.c.3645842_d2
title: Additional file 7: Table S7. of Transcriptome analysis of Sporisorium scitamineum reveals critical environmental signals for fungal sexual mating and filamentous growth

description: List of enriched KEGG terms in non-mating mixture of SsÎ MAT-1b X MAT-2, compared to the mating mixture of MAT-1 X MAT-2. (XLS 48Â kb)
DOI: 10.6084/m9.figshare.c.3645842_d4
title: Additional file 5: Table S5. of Transcriptome analysis of Sporisorium scitamineum reveals critical environmental signals for fungal sexual mating and filamentous growth

description: List enriched GO in non-mating mixture of SsÎ MAT-1b X MAT-2, compared to the mating mixture of MAT-1 X MAT-2 (XLS 42Â kb)
DOI: 10.6084/m9.figshare.c.3645842_d7
title: Additional file 4: Table S4. of Transcriptome analysis of Sporisorium scitamineum reveals critical environmental signals for fungal sexual mating and filamentous growth

description: List enriched GO in SsÎ MAT-1b mutant compared to the wild-type MAT-1. (XLS 41Â kb)
DOI: 10.6084/m9.figshare.c.3645842_d6
title: Additional file 1: Table S1. of Transcriptome analysis of Sporisorium scitamineum reveals critical environmental signals for fungal sexual mating and filamentous growth

description: List of All-Unigene De novo assembled in this study. (XLS 2360Â kb)
DOI: 10.6084/m9.figshare.c.3645842_d8
title: Additional file 3: Table S3. of Transcriptome analysis of Sporisorium scitamineum reveals critical environmental signals for fungal sexual mating and filamentous growth

description: List of DEGs (p ≤ 0.05) in non-mating mixture of SsΔMAT-1b X MAT-2, compared to the mating mixture of MAT-1 X MAT-2 (XLS 185 kb)
DOI: 10.6084/m9.figshare.c.3645908_d1
title: Additional file 2 of Comparison of different approaches to estimating age standardized net survival

description: Stata Do file to generate and analyse the simulated data for scenario 2. (PDF 3 kb)
DOI: 10.6084/m9.figshare.c.3645908_d2
title: Additional file 1 of Comparison of different approaches to estimating age standardized net survival

description: Stata Do file to generate and analyse the simulated data for scenario 1. (PDF 3 kb)
DOI: 10.6084/m9.figshare.c.3645941_d1
title: Additional file 2: of Analysis of thromboelastography, PT, APTT and fibrinogen in intraosseous and venous samples—an experimental study

description: TEG parameters reaction time (R), kinetics (K), α-angle (α), Maximal amplitude (MA) and lysis at 30 minutes (Ly30) in intraosseous (IO) and venous (IV) samples at first (1) and second (2) sampling, and differences. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3645941_d2
title: Additional file 1: of Analysis of thromboelastography, PT, APTT and fibrinogen in intraosseous and venous samplesâ  an experimental study

description: Values of Prothrombin Time (PT), Activated Partial Thromboplastin Time (APTT) and Fibrinogen (FIB) in intraosseous (IO) and venous (IV) samples and differences (D) at first (1) and second (2) sampling. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3645950_d2
title: Additional file 1: Table S1. of Omic personality: implications of stable transcript and methylation profiles for personalized medicine

description: Amount of variation among individuals. Table S2. Experimental design file. Table S3. Principal components of the omic measures. Table S4. Methylation R-squared statistics by CpG location and type. Table S5. Correlations between peak CpG and nearest transcript abundance. Table S6. Correlations with cell counts. Table S7. Correlations with Axis scores. Table S8. Extreme transcripts by individual. Table S9. Extreme peak CpG by individual. Table S10. Enriched pathways in extremes of expression and methylation. Table S11. Correlations between miRNA and mRNA. Table S12. Allele-specific expression. Table S13. Axis scores (PC1 of the blood informative transcripts). (XLSX 6779Â kb)
DOI: 10.6084/m9.figshare.c.3645953_d1
title: MOESM1 of Case report: Weilâ  s disease with multiple organ failure in a child living in dengue endemic area

description: Additional file 1. Dataset for the case report.
DOI: 10.6084/m9.figshare.c.3645959_d1
title: MOESM1 of MaGelLAn 1.0: a software to facilitate quantitative and population genetic analysis of maternal inheritance by combination of molecular and pedigree information

description: Additional file 1. Zip archive of MaGelLAn1.0 source code consisting of four Python3 scripts.
DOI: 10.6084/m9.figshare.c.3646040_d1
title: Additional file 3: Table S3. of Adherence and invasive properties of Corynebacterium diphtheriae strains correlates with the predicted membrane-associated and secreted proteome

description: A list of entire predicted proteome for C. diphtheriae using an array of computational programs. (XLSX 1116 kb)
DOI: 10.6084/m9.figshare.c.3646052_d1
title: Additional file 1: of Adaptation of a RAS pathway activation signature from FF to FFPE tissues in colorectal cancer

description: The 18 gene RAS scores, and KRAS/BRAF/NRAS mutation status for 54 CRC samples (15 “bad” samples are in bold; PC1: the first principal component; PC2: the second principal component; 1 = mutation present, 0 = mutation absent; * = score based on 16 genes) (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3646190_d1
title: Additional file 4: Table S3. of Transcriptomic responses to prion disease in rats

description: Prion disease responsive probe sets conserved between mice and rats. Genes with significant differential expression (pâ
DOI: 10.6084/m9.figshare.c.3646190_d2
title: Additional file 2: Table S1. of Transcriptomic responses to prion disease in rats

description: Genes whose expression is differentially regulated in rat-adapted scrapie. Genes were selected for inclusion if their dysregulation was greater than 1.6-fold at clinical disease and their F-test p-value was less than 0.05 using a Benjamini-Hochberg false discovery rate correction for multiple testing. (XLSX 117Â kb)
DOI: 10.6084/m9.figshare.c.3646190_d3
title: Additional file 3: Table S2. of Transcriptomic responses to prion disease in rats

description: Ontology terms associated with genes differentially expressed in rat-adapted scrapie. (XLSX 97Â kb)
DOI: 10.6084/m9.figshare.c.3646193_d2
title: Additional file 7: of The transcription factor scleraxis is a critical regulator of cardiac fibroblast phenotype

description: Supporting data. (XLSX 284 kb)
DOI: 10.6084/m9.figshare.c.3646202_d1
title: MOESM3 of A high-density SNP panel reveals extensive diversity, frequent recombination and multiple recombination hotspots within the chicken major histocompatibility complex B region between BG2 and CD1A1

description: Additional file 3: Table S3. Detected MHC SNP-based recombinant haplotypes. Information includes the parental haplotypes and the range (defined by SNPs) within which each recombination occurred.
DOI: 10.6084/m9.figshare.c.3646304_d2
title: Additional file 2: of Neuroprotective effect of a novel Chinese herbal decoction on cultured neurons and cerebral ischemic rats

description: An excel file containing all the data used for plotting the bar charts. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3646307_d1
title: Additional file 2: of Generalized enrichment analysis improves the detection of adverse drug events from the biomedical literature

description: Overall performance measured on all drug classes and outcomes in OMOP gold standard. Performance is measured for each of the four AE outcomes measured in terms of AUC summarizing all achievable combinations of true positive and false positive rates. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3646307_d2
title: Additional file 3: of Generalized enrichment analysis improves the detection of adverse drug events from the biomedical literature

description: Adverse event signals for drug classes detected by GEA and PRR. Adverse event signals for drug classes (ATC4 codes) detected by GEA and PRR using different thresholds at different aggregation levels. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3646307_d4
title: Additional file 4: of Generalized enrichment analysis improves the detection of adverse drug events from the biomedical literature

description: Coverage of ADEs in MEDLINE. Coverage of adverse drug events in MEDLINE differs significantly across the four outcomes in OMOP. In particular for “Acute myocardial infarction”, only 16 out of the 33 positive test cases (48 %) were found in our set of candidate drug – adverse event pairs from the literature (at low abstraction). For 17 out of 33 drugs, there was not a single article mentioning a relation between drug and acute MI, and hence no signal could be detected. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3646310_d3
title: Additional file 9 of CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data

description: Gene probability distribution for topic 3. Per-topic gene probability distribution for Topic 3 of the hESC data model computed by cellTree. (CSV 3 kb)
DOI: 10.6084/m9.figshare.c.3646322_d2
title: Additional file 1: of Socioeconomic gradients in the effects of universal school-based health behaviour interventions: a systematic review of intervention studies

description: Full list of studies included (including those which did and dod not examine differential effectsby SES). (RTF 1427 kb)
DOI: 10.6084/m9.figshare.c.3646409_d1
title: Additional file 1: Table S1. of The evolutionary dynamics of tRNA-gene copy number and codon-use in E. coli.

description: The tRNA gene copy number for major E. coli strains used in this study. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3646502_d14
title: Additional file 3: Table S2. of Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

description: Prevalence and relative abundance of microbes and KEGG modules found in both this study and HMP [21]. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3646514_d2
title: Additional file 3: Table S4. of Early transcriptomic response to Fe supply in Fe-deficient tomato plants is strongly influenced by the nature of the chelating agent

description: Functional annotation of differentially expressed transcripts resulted by the comparison of root transcriptional profiles of Fe-deficient plants supplied for 1Â h with Fe-citrate, Fe-PS and Fe-WEHS with root transcriptional profile of Fe-deficient plants. Probe ID, description, species, identity, score, e-value, Uniprot entry and biological GO term were reported. The adjusted p-value and Log2(R) were also reported for each transcript. (XLSX 130Â kb)
DOI: 10.6084/m9.figshare.c.3646514_d3
title: Additional file 2: Table S3. of Early transcriptomic response to Fe supply in Fe-deficient tomato plants is strongly influenced by the nature of the chelating agent

description: Differentially expressed transcripts resulted by the comparison of root transcriptional profiles of Fe-deficient plants supplied for 1Â h with Fe-WEHS, Fe-citrate and Fe-PS with root transcriptional profile of Fe-sufficient plants. Probe ID, adjusted p-value and Log2(R) were reported for each transcript. (XLS 174Â kb)
DOI: 10.6084/m9.figshare.c.3646526_d3
title: Additional file 1: of GEP analysis validates high risk MDS and acute myeloid leukemia post MDS mice models and highlights novel dysregulated pathways

description: Lists of regulated genes in HR-MDS and AML post MDS relative to FVB/N (Tables S1 to S31). (XLSX 1839 kb)
DOI: 10.6084/m9.figshare.c.3646526_d2
title: Additional file 2: Figure S1. of GEP analysis validates high risk MDS and acute myeloid leukemia post MDS mice models and highlights novel dysregulated pathways

description: GSEA analysis, (A) Endplot of significantly dysregulated pathways in HR-MDS vs FVB/N, (B) Endplot of significantly dysregulated pathways in AML post MDS vs FVB/N (ZIP 5853 kb)
DOI: 10.6084/m9.figshare.c.3646529_d3
title: Additional file 7: of Variant detection and runs of homozygosity in next generation sequencing data elucidate the genetic background of Lundehund syndrome

description: Runs of homozygosity for Lundehund specific regions in 500-SNP windows. The chromosomal position of ROH regions, number of SNPs in these regions (n), size in base pairs (size_bp), canine genes (gene) and human orthologues (human gene) are shown. (XLSX 88 kb)
DOI: 10.6084/m9.figshare.c.3646529_d6
title: Additional file 5: of Variant detection and runs of homozygosity in next generation sequencing data elucidate the genetic background of Lundehund syndrome

description: Private runs of homozygosity for LS-affected Lundehund in 500-SNP windows. The chromosomal position of ROH regions, number of SNPs in these regions (n), size in base pairs (size_bp), canine genes (gene) and human orthologues (human gene) are shown. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3646529_d9
title: Additional file 4: of Variant detection and runs of homozygosity in next generation sequencing data elucidate the genetic background of Lundehund syndrome

description: Runs of homozygosity for LS-affected Lundehund in 500-SNP windows. The chromosomal position of ROH regions, number of SNPs in these regions (n), size in base pairs (size_bp), canine genes (gene) and human orthologues (human gene) are shown. (XLSX 319 kb)
DOI: 10.6084/m9.figshare.c.3646529_d10
title: Additional file 6: of Variant detection and runs of homozygosity in next generation sequencing data elucidate the genetic background of Lundehund syndrome

description: Private runs of homozygosity for LS-unaffected Lundehund in 500-SNP windows. The chromosomal position of ROH regions, number of SNPs in these regions (n), size in base pairs (size_bp), canine genes (gene) and human orthologues (human gene) are shown. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.c.3646622_d1
title: Additional file 2: of In epithelial cancers, aberrant COL17A1 promoter methylation predicts its misexpression and increased invasion

description: COL17A1 promoter methylation levels (Î˛-values, TCGA Illumina Infinium Human Methylation 450). (XLSX 231Â kb)
DOI: 10.6084/m9.figshare.c.3646625_d5
title: Additional file 13: Table S3. of Tools and best practices for data processing in allelic expression analysis

description: Summary of QC problems for AE data, proposed solutions, and potential drawbacks. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3646625_d6
title: Additional file 10: Table S2. of Tools and best practices for data processing in allelic expression analysis

description: Summary of publications and tools that analyze AE data, listing their specific application, the type of statistical test performed, and the required input data. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.c.3646625_d8
title: Additional file 7: Table S1. of Tools and best practices for data processing in allelic expression analysis

description: Summary of methods for correcting mapping bias in AE analysis. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.c.3646655_d1
title: Additional file 11: Table S8. of A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer

description: Missense Variants Identified In 6 Patients Or More (XLSX 11Â kb)