cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5698054
title: Effect of native and allochthonous arbuscular mycorrhizal fungi on <i>Casuarina equisetifolia</i> growth and its root bacterial community

description: Exotic trees are often planted to recover degraded lands. Inoculation with mycorrhizal fungi can improve their survival. Plant growth is partly dependent on the strain used, but little attention has been paid to the selection of mycorrhizal fungi. The aim of this study was to determine whether the growth of <i>Casuarina equisetifolia</i> L. (Johnson) is affected by two different mycorrhizal inocula generated using fungal spores retrieved from an Australian site (allochthonous soil) and a Senegalese site (native soil) under <i>C. equisetifolia</i> trees. Comparative experiments were conducted with plants in a Senegalese soil, previously sterilized or not, and grown in a greenhouse. At harvest, parameters related to plant growth and mycorrhization were evaluated and soil bacterial communities were compared. Tree growth was significantly influenced by both types of inoculants. In unsterilized soil, plants inoculated with the native inoculant were taller than plants inoculated with the allochthonous inoculant and control plants. The frequency of mycorrhization with both inoculants was higher in unsterilized soil. The strongest effects of the mycorhizosphere on the soil microbiome were obtained with the allochthonous inoculum, and analysis of the taxonomic composition revealed mycorrhizal communities specific to each inoculum. These results suggest that the development of <i>C. equisetifolia</i> and its root bacterial community are dependent on the composition of the mycorrhizal inoculum. The functional consequences of this rhizosphere effect in terms of soil fertility should be further studied to better guide reforestation operations.
DOI: 10.6084/m9.figshare.5698054.v1
title: Effect of native and allochthonous arbuscular mycorrhizal fungi on <i>Casuarina equisetifolia</i> growth and its root bacterial community

description: Exotic trees are often planted to recover degraded lands. Inoculation with mycorrhizal fungi can improve their survival. Plant growth is partly dependent on the strain used, but little attention has been paid to the selection of mycorrhizal fungi. The aim of this study was to determine whether the growth of <i>Casuarina equisetifolia</i> L. (Johnson) is affected by two different mycorrhizal inocula generated using fungal spores retrieved from an Australian site (allochthonous soil) and a Senegalese site (native soil) under <i>C. equisetifolia</i> trees. Comparative experiments were conducted with plants in a Senegalese soil, previously sterilized or not, and grown in a greenhouse. At harvest, parameters related to plant growth and mycorrhization were evaluated and soil bacterial communities were compared. Tree growth was significantly influenced by both types of inoculants. In unsterilized soil, plants inoculated with the native inoculant were taller than plants inoculated with the allochthonous inoculant and control plants. The frequency of mycorrhization with both inoculants was higher in unsterilized soil. The strongest effects of the mycorhizosphere on the soil microbiome were obtained with the allochthonous inoculum, and analysis of the taxonomic composition revealed mycorrhizal communities specific to each inoculum. These results suggest that the development of <i>C. equisetifolia</i> and its root bacterial community are dependent on the composition of the mycorrhizal inoculum. The functional consequences of this rhizosphere effect in terms of soil fertility should be further studied to better guide reforestation operations.
DOI: 10.6084/m9.figshare.5697745
title: High resolution photographs of <i>Nectocotis rusmithi</i>

description: High resolution photographs of <i>Nectocotis rusmithi</i> Smith 2019, taken under polarised and non-polarised light, bright-field and dark-field illumination.
DOI: 10.6084/m9.figshare.5697709
title: Intensity and duration of effects of impoundment on mercury levels in fishes of hydroelectric reservoirs in northern Québec (Canada)

description: At the La Grande Hydroelectric Complex (Québec, Canada), total mercury (THg) levels in fish were monitored from 1978 to 2012 in more than 37 000 fish comprising 5 species: lake whitefish (<i>Coregonus clupeaformis</i>), longnose sucker (<i>Catostomus catostomus</i>), northern pike (<i>Esox lucius</i>), walleye (<i>Sander vitreus</i>), and lake trout (<i>Salvelinus namaycush</i>). In reservoirs, concentrations of all species increased rapidly after impoundment, peaking after 4–11 yr in nonpiscivorous species and after 9–14 yr in piscivorous species, at levels 2–8 times higher than those measured in surrounding natural lakes. In fish of standardized length, maximum levels reached 0.33–0.72 μg g<sup>−1</sup> in nonpiscivorous species and 1.65–4.66 μg<i> </i>g<sup>−1</sup> in piscivorous species. Depending on the reservoir, the return to levels equivalent (<i>p</i> &lt; 0.05) to those found in fish in surrounding natural lakes was completed after 10–20 yr for all nonpiscivorous species and after 20– 31 yr in most piscivorous species, if no additional flooding occurred. These results tend to confirm the findings of other authors suggesting that the following reservoir characteristics play a major role in determining the intensity and duration of after-impoundment THg increases in fish: flooded area, annual volume of water flowing through the reservoir, filling period, water temperature, and percentage of flooded area located in the drawdown zone.
DOI: 10.6084/m9.figshare.5697709.v2
title: Intensity and duration of effects of impoundment on mercury levels in fishes of hydroelectric reservoirs in northern Québec (Canada)

description: At the La Grande Hydroelectric Complex (Québec, Canada), total mercury (THg) levels in fish were monitored from 1978 to 2012 in more than 37 000 fish comprising 5 species: lake whitefish (<i>Coregonus clupeaformis</i>), longnose sucker (<i>Catostomus catostomus</i>), northern pike (<i>Esox lucius</i>), walleye (<i>Sander vitreus</i>), and lake trout (<i>Salvelinus namaycush</i>). In reservoirs, concentrations of all species increased rapidly after impoundment, peaking after 4–11 yr in nonpiscivorous species and after 9–14 yr in piscivorous species, at levels 2–8 times higher than those measured in surrounding natural lakes. In fish of standardized length, maximum levels reached 0.33–0.72 μg g<sup>−1</sup> in nonpiscivorous species and 1.65–4.66 μg<i> </i>g<sup>−1</sup> in piscivorous species. Depending on the reservoir, the return to levels equivalent (<i>p</i> &lt; 0.05) to those found in fish in surrounding natural lakes was completed after 10–20 yr for all nonpiscivorous species and after 20– 31 yr in most piscivorous species, if no additional flooding occurred. These results tend to confirm the findings of other authors suggesting that the following reservoir characteristics play a major role in determining the intensity and duration of after-impoundment THg increases in fish: flooded area, annual volume of water flowing through the reservoir, filling period, water temperature, and percentage of flooded area located in the drawdown zone.
DOI: 10.6084/m9.figshare.5697709.v1
title: Intensity and duration of effects of impoundment on mercury levels in fishes of hydroelectric reservoirs in northern Québec (Canada)

description: At the La Grande Hydroelectric Complex (Québec, Canada), total mercury (THg) levels in fish were monitored from 1978 to 2012 in more than 37 000 fish comprising 5 species: lake whitefish (<i>Coregonus clupeaformis</i>), longnose sucker (<i>Catostomus catostomus</i>), northern pike (<i>Esox lucius</i>), walleye (<i>Sander vitreus</i>), and lake trout (<i>Salvelinus namaycush</i>). In reservoirs, concentrations of all species increased rapidly after impoundment, peaking after 4–11 yr in nonpiscivorous species and after 9–14 yr in piscivorous species, at levels 2–8 times higher than those measured in surrounding natural lakes. In fish of standardized length, maximum levels reached 0.33–0.72 μg g<sup>−1</sup> in nonpiscivorous species and 1.65–4.66 μg<i> </i>g<sup>−1</sup> in piscivorous species. Depending on the reservoir, the return to levels equivalent (<i>p</i> &lt; 0.05) to those found in fish in surrounding natural lakes was completed after 10–20 yr for all nonpiscivorous species and after 20– 31 yr in most piscivorous species, if no additional flooding occurred. These results tend to confirm the findings of other authors suggesting that the following reservoir characteristics play a major role in determining the intensity and duration of after-impoundment THg increases in fish: flooded area, annual volume of water flowing through the reservoir, filling period, water temperature, and percentage of flooded area located in the drawdown zone.
DOI: 10.6084/m9.figshare.5697700
title: Backscatter electron micrographs of <i>Nectocotis rusmithi</i>

description: Backscatter SEM images of <i>Nectocotis rusmithi </i>Smith 2019
DOI: 10.6084/m9.figshare.5697694
title: Supplementary Files

description: Supplementary Files
DOI: 10.6084/m9.figshare.5697694.v1
title: Supplementary Files

description: Supplementary Files
DOI: 10.6084/m9.figshare.5697643
title: Protein multiple sequence alignment for P450 tree - Appendix 1-figure 13

description: Protein multiple sequence alignment for P450 tree - Appendix 1-figure 13
DOI: 10.5061/dryad.6q16d/7
title: Intake data during Survivalship trial

description: Data spreadsheet analyzed by "Kurnath et al Experiment 2" code in R.  Includes food intake, creosote resin intake, and body mass of animals at three temperatures during 10-day feeding trial.  Each row represents one animal during one day of the trial.  Columns represent temperature treatment, dietary concentration of creosote resin presented to animals, food intake, creosote resin intake, and body mass.
DOI: 10.5061/dryad.77428/1
title: Struck2015_CurrentBiology_InterstitialAnnelida

description: his file contains the concatenated datasets used for phylogenetic analyses in phylip-format in the folder „Datasets“and additional results in the pdf-file „ExtraResults“ with an explanation of the results. The datasets are named in correspondence to the numbers in Table 1 of the manuscript in Current Biology by Struck and co-authors entitled „The evolution of annelids reveals two adaptive routes to the interstitial realm“. The names of the dataset files are as follows:Dataset_1.phyDataset_2.phyDataset_3.phyDataset_4.phyDataset_5.phyDataset_6.phyDataset_7.phyDataset_8.phyDataset_9.phyDataset_10.phyDataset_11.phyDataset_12.phyDataset_13.phyDataset_14.phyDataset_15.phyDataset_16.phyDataset_17.phyDataset_18.phyDataset_19.phyDataset_20.phyDataset_21.phyDataset_22.phyDataset_23.phyDataset_24.phy
DOI: 10.5061/dryad.7qv72/1
title: readme_scripts

description: File describing the scripts included in this Dryad accession
DOI: 10.5061/dryad.7qv72/2
title: 01_count_SNPs_extended_version

description: python script for counting SNPs
DOI: 10.5061/dryad.7qv72/3
title: 001_get_longest_transcript

description: Python script for identifying longest transcripts
DOI: 10.5061/dryad.7qv72/4
title: 002_get_orfs_from_longest_seqs

description: Python script for retrieving open reading frames from longest Trinity transcripts per component
DOI: 10.5061/dryad.7qv72/5
title: 02_merge_SNP_counts_w_lens

description: Python script for performing merge of counts and lengths files
DOI: 10.5061/dryad.7qv72/6
title: 03_collapse_to_longest

description: Python script for collapsing a set of transcripts to only the longest single splicing isoforms
DOI: 10.5061/dryad.7qv72/7
title: 003_get_best_evalues

description: Python script for identifying the best blast e-values from a set of multiple blast results for a single transcript
DOI: 10.5061/dryad.82c5b/1
title: ZipArchive of Supplementary Material for nSSR detection, including ReadMe

description: This ZipArchive contains all files (data, R scripts) required for performing the nSSR search with the example data of Melanargia galathea, including a ReadMe for explanation.
DOI: 10.5061/dryad.87g80.1
title: Data from: Site-specific group selection drives locally adapted group compositions
DOI: 10.5061/dryad.87g80.2/1.2
title: Source data on colony survival, correlates of extinction, and demography of natural colonies
DOI: 10.5061/dryad.87g80.2/2.2
title: Long Term Census Data
DOI: 10.5061/dryad.fc07k/1
title: Dataset 1 Coastal wetland consumer effect synthesis All

description: This dataset contains the data from all consumer effect studies included in the analysis
DOI: 10.5061/dryad.fc07k/2
title: Dataset 2 Coastal wetland consumer effect synthesis Competition subset

description: This dataset contains data collected from studies that examined the effects of consumers on plant competition
DOI: 10.5061/dryad.fc07k/3
title: Dataset 3 Coastal wetland consumer effect synthesis Environmental factor subset

description: This dataset contains data collected from studies that crossed consumer treatments with environmental factors
DOI: 10.5061/dryad.j5v32/1
title: Eosinophil results by foraging

description: Data necessary to run analysis on the influence of foraging on eosinophil concentrations. Given small population sizes all data have been randomised to protect individuals identity.
DOI: 10.5061/dryad.j5v32/2
title: Eosinophil results by settlement

description: Data necessary to run analysis on the influence of settlement on eosinophil concentrations. Given small population sizes all data have been randomised to protect individuals identity.
DOI: 10.5061/dryad.j5v32/3
title: Fertility by foraging

description: Data necessary to run analysis on the influence of foraging on fertility. Given small population sizes all data have been randomised to protect individuals identity.
DOI: 10.5061/dryad.j5v32/4
title: Fertility by settlement

description: Data required for analysis of fertility and mobility.
DOI: 10.5061/dryad.j5v32/5
title: Lymphocytosis by foraging

description: Data necessary to run analysis on the influence of foraging on Lymphocytosis. Given small population sizes all data have been randomised to protect individuals identity.
DOI: 10.5061/dryad.j5v32/6
title: Lymphocytosis by settlement

description: Data necessary to run analysis on the influence of settlement on Lymphocytosis. Given small population sizes all data have been randomised to protect individuals identity.
DOI: 10.5061/dryad.j5v32/7
title: Mortality by foraging

description: Data necessary to run analysis on the influence of foraging on mortality. Given small population sizes all data have been randomised to protect individuals identity.
DOI: 10.5061/dryad.j5v32/8
title: Mortality by settlement

description: Data necessary to run analysis on the influence of settlement on mortality. Given small population sizes all data have been randomised to protect individuals identity.
DOI: 10.5061/dryad.j5v32/9
title: Neutrophilia by foraging

description: Data necessary to run analysis on the influence of foraging on Neutrophilia. Given small population sizes all data have been randomised to protect individuals identity.
DOI: 10.5061/dryad.jn8nt/1
title: AE171_data_files

description: This folder contains AE171 data saved into different file formats: AE171_concatenated.phylip contains all 171 AE loci concatenated into a supermatrix for species tree analyses.AE171_fasta singles folder contains 171 AE loci as individual fasta-formatted files.AE171_multi.nexus file contains 171 AE loci together in a single nexus-formatted file with BEST and MrBayes commands for species tree analyses.AE171_multi.phylip file contains 171 AE loci together in a single phylip-formatted file (file used in BP&P2.2 analyses.AL171_nexus_singles folder contains 171 AE loci as individual nexus-formatted files.
DOI: 10.5061/dryad.jn8nt/2
title: AE242_data_files

description: This folder contains AE242 data saved into different file formats: AE242_concatenated.phylip contains all 242 AE loci concatenated into a supermatrix for species tree analyses.AE242_fasta singles folder contains 242 AE loci as individual fasta-formatted files.AE242_multi.nexus file contains 242 AE loci together in a single nexus-formatted file with BEST and MrBayes commands for species tree analyses.AE242_multi.phylip file contains 242 AE loci together in a single phylip-formatted file (file used in BP&P2.2 analyses.AL242_nexus_singles folder contains 242 AE loci as individual nexus-formatted files.
DOI: 10.5061/dryad.jn8nt/3
title: AL292_data_files

description: This folder contains AL292 data saved into different file formats:  AL292_concatenated.phylip contains all 292 loci concatenated into a supermatrix for species tree analyses.AL292_fasta singles folder contains 292 single-copy, presumably neutral, and independent anonymous loci as individual fasta-formatted files.AL292_multi.nexus file contains 292 single-copy, presumably neutral, and independent anonymous loci together in a single nexus-formatted file with BEST and MrBayes commands for species tree analyses.AL292_multi.phylip file contains 292 single-copy, presumably neutral, and independent anonymous loci together in a single phylip-formatted file (file used in BP&P2.2 analyses.AL292_nexus_singles folder contains 292 single-copy, presumably neutral, and independent anonymous loci as individual nexus-formatted files.
DOI: 10.5061/dryad.jn8nt/4
title: HKY208_data_files

description: This folder contains HKY208 data saved into different file formats:  HKY208_multi.phylip contains all 208 AL loci found in the AL292 dataset, which fit the HKY model of substitution. These HKY-only data were analyzed separately to evaluate the effects of model selection on our results.HKY208_nexus_singles folder contains 208 single-copy, presumably neutral, and independent anonymous loci that fit the HKY model as individual nexus-formatted files.
DOI: 10.5061/dryad.kp296/1
title: Genotypes of linkage map

description: This file includes genotyping data of linkage map for several families from each population, Ammarnas and Tvedora.
DOI: 10.5061/dryad.kp296/2
title: Genotypes for Dxy calculation

description: This file includes genotypes of all progeny and parents. Each individual is assigned the relative maleness score to indicate the phenotypic sex.
DOI: 10.5061/dryad.kp296/3
title: Genotype for adults

description: This file includes the genotypes of dmrt1 region for all adults from the two populations: Ammarnas and Tvedora.
DOI: 10.5061/dryad.m00v5/1
title: Cross-sectional adult nematode data

description: Host traits and Trichostrongyle nematode counts from necropsied African buffalo in Kruger National Park. Data file includes: Buffalo ID, Capture date, Treatment status (Treated with fenbendazole, Control), Counts of nematodes (from a 2.5% sample), Age (months), Herd (Crocodile Bridge [CB], Lower Sabie [LS]), Season (Early Dry, Late Dry, Early Wet, Late Wet), and Time since last capture (days).
DOI: 10.5061/dryad.n2g80/1
title: README

description: README file describes the file type and contents of all files in this data repository.
DOI: 10.5061/dryad.n2g80/2
title: B2noSA_inputFile

description: BEAST2 Input file for noSA analysis
DOI: 10.5061/dryad.n2g80/3
title: B2noSA_majrule_burn03

description: Half-compatibility summary for noSA BEAST2 analysis
DOI: 10.5061/dryad.n2g80/4
title: B2noSA_mcc_burn03

description: Maximum clade credibility summary for noSA BEAST2 analysis
DOI: 10.5061/dryad.n2g80/5
title: B2noSA_treelog

description: Posterior sampled tree file from BEAST2 noSA analysis
DOI: 10.5061/dryad.n2g80/6
title: B2SA_inputFile

description: BEAST2 Input file for SA analysis
DOI: 10.5061/dryad.nd1js/11
title: Tribolium castaneum RNAi phenotype data

description: Phenotypic measurements from dsRNA injected T. castaneum. For analysis and plotting using the R code in file "RNAiAnalyses.R".
DOI: 10.5061/dryad.nd1js/12
title: Onthophagus taurus RNAi phenotype data

description: Phenotypic measurements from dsRNA injected O. taurus. For analysis and plotting using the R code in file "RNAiAnalyses.R".
DOI: 10.5061/dryad.nd1js/13
title: Onthophagus sagitarius RNAi phenotype data

description: Phenotypic measurements from dsRNA injected O. sagittarius. For analysis and plotting using the R code in file "RNAiAnalyses.R".
DOI: 10.5061/dryad.nd1js/14
title: Tribolium castaneum qPCR validation of RNAi KD efficiency (Figure S9)

description: Raw data from qPCR experiments to validate the knockdown efficiency of dsRNA injections in Tribolium castaneum.
DOI: 10.5061/dryad.qh8c9/3
title: Data_supplement_updated160112

description: Data for analyses. See ReadMe file.
DOI: 10.5061/dryad.tj4tn/1
title: Dsaltans_antennae_ablation_AB

description: Results of ablating antennae
DOI: 10.5061/dryad.tj4tn/2
title: Dsaltans_aristae_ablation_AB

description: Results of ablating aristae
DOI: 10.5061/dryad.tj4tn/3
title: Dsaltans_eye_ablation_AB

description: Results of covering eyes
DOI: 10.5061/dryad.tm32k/1
title: Supplemental figures 1-4
DOI: 10.5061/dryad.tm32k/2
title: Supplemental table 1
DOI: 10.5061/dryad.v7r0b/6
title: Vines et al Bonsall Creek Readme

description: A readme for the Vines et al Bonsall Creek data files
DOI: 10.5061/dryad.1d808/1
title: Dryad data
DOI: 10.5061/dryad.1fg41/1
title: Foraging data

description: Notes: "chip" is the id identifier of each golden spiny mouse. "Ta" is the average ambient temperature measured at the foraging position (1 to 4) and habitat (bb or ub). "Tb" is the average body temperature measured from the golden spiny mouse. "energy expenditure" and "evaporative water" loss are the metabolic costs of foraging calculated using the endotherm model. "Mass" is the body mass of the golden spiny mouse. "Start.gud" is the estimated amounts of seeds at the position and habitat at the beginning of the hour, estimated by fitting a harvest rate curve to the foraging activity. "Duration" is the amount of time spent at the foraging patch.
DOI: 10.5061/dryad.2gp80/1
title: MetacomCarryoverFullbyPatch

description: Abundance, dispersal and mortality data across all checks for "Carryover Effects Drive Competitive Dominance in Spatially Structured Environments" by B. G. Van Allen and V. H. W. Rudolf. Data is organized at the patch level (three patches together makes one landscape, landscapes are numbered to reference the patches together)
DOI: 10.5061/dryad.2pf35/2
title: CytB sequences psittacula krameri

description: Gives the cytB sequences that were used in the phylogeny.
DOI: 10.5061/dryad.2pf35/3
title: microsatellite data set

description: Gives the microsatellite profiles of each individuals used in the population genetics analyses.
DOI: 10.5061/dryad.2pf35/4
title: traditional morphometric measurements

description: Gives the raw morphological measurements taken on individuals from the native and invasive ranges and used in the traditional morphometric analysis.
DOI: 10.5061/dryad.2pf35/5
title: geometric morphometric data

description: Gives the morphological variables taken on individuals from the native and invasive ranges and used in the geometric morphometric analysis.