cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5127742.v1
title: Supplementary Material for: Differential Phonological and Semantic Modulation of Neurophysiological Responses to Visual Word Recognition

description: <b><i>Background:</i></b> Reading words for meaning relies on orthographic, phonological and semantic processing. The triangle model implicates a direct orthography-to-semantics pathway and a phonologically mediated orthography-to-semantics pathway, which interact with each other. The temporal evolution of processing in these routes is not well understood, although theoretical evidence predicts early phonological processing followed by interactive phonological and semantic processing. <b><i>Method:</i></b> This study used electroencephalography-event-related potential (ERP) analysis and magnetoencephalography (MEG) source localisation to identify temporal markers and the corresponding neural generators of these processes in early (∼200 ms) and late (∼400 ms) neurophysiological responses to visual words, pseudowords and consonant strings. <b><i>Results:</i></b> ERP showed an effect of phonology but not semantics in both time windows, although at ∼400 ms there was an effect of stimulus familiarity. Phonological processing at ~200 ms was localised to the left occipitotemporal cortex and the inferior frontal gyrus. At 400 ms, there was continued phonological processing in the inferior frontal gyrus and additional semantic processing in the anterior temporal cortex. There was also an area in the left temporoparietal junction which was implicated in both phonological and semantic processing. In ERP, the semantic response at ∼400 ms appeared to be masked by concurrent processes relating to familiarity, while MEG successfully differentiated these processes. <b><i>Discussion:</i></b> The results support the prediction of early phonological processing followed by an interaction of phonological and semantic processing during word recognition. Neuroanatomical loci of these processes are consistent with previous neuropsychological and functional magnetic resonance imaging studies. The results also have implications for the classical interpretation of N400-like responses as markers for semantic processing.
DOI: 10.17632/29wv9h78h7
title: Computational micromagnetics with Commics

description: We present our open-source Python module Commics for the study of the magnetization dynamics in ferromagnetic materials via micromagnetic simulations. It implements state-of-the-art unconditionally convergent finite element methods for the numerical integration of the Landau–Lifshitz–Gilbert equation. The implementation is based on the multiphysics finite element software Netgen/NGSolve. The simulation scripts are written in Python, which leads to very readable code and direct access to extensive post-processing. Together with documentation and example scripts, the code is freely available on GitLab.
DOI: 10.17632/3g6b5ynrdb
title: Comprehensive bathymetry and intertidal topography of the Amazon estuary

description: This dataset contains the following maps: 1) Bathymetry of the Amazon estuary (Bathymetry.tif and Bathymetry.nc); Elevation in meters relative to the EGM2008 geoid. 2) Topography of the non-forested portion of the lower Amazon floodplain (Topography.tif and Topography.nc); Elevation in meters relative to the EGM2008 geoid. 3) Flood frequency for the period 2015 to 2018 (FloodFrequency_15to18.tif and FloodFrequency_15to18.nc); Values ranging from 0 to 100%. 4) Unified mapping of the Amazon estuary: merge of bathymetry, topography, MERIT, and GEBCO products (DEM_AMestuary.tif and DEM_AMestuary.nc); Elevation in meters relative to the EGM2008 geoid. 5) Boundaries of each domain of the unified mapping (domain_boundary.shp). 6) Code example to read netcdf files in MATLAB (read_netcdf.m).
DOI: 10.6084/m9.figshare.12959489.v6
title: 20th Century Cooling of the Deep Ocean Contributed to Delayed Acceleration of Earth’s Energy Imbalance

description: Datasets and code for global ocean heat analysis using an autoregressive artificial neural network (ARANN).<br>Cooling of the global ocean below 2000 m counteracted some of the warming of the shallow ocean over much of the late 20th century. This trend has shifted to warming, leading the deep ocean to absorb a meaningful fraction of total ocean heat during the 21st century. <br>
DOI: 10.6084/m9.figshare.28024910.v1
title: Anisotropic Skyrmion and Multi-<i>q </i>Spin Dynamics in Centrosymmetric Gd<sub>2</sub>PdSi<sub>3</sub>: Data and Code

description: Data and code from the paper: M. Gomilšek <i>et al.</i>, Anisotropic Skyrmion and Multi-<i>q</i> Spin Dynamics in Centrosymmetric Gd<sub>2</sub>PdSi<sub>3</sub>, Phys. Rev. Lett. <b>134</b>, 046702 (2025). Please refer to the paper for more information.Within the zipped file, data and code are organized into folders by figure names.File formats:*.py ... Python script file<br>*.dat, [no extension] ... ASCII data file. Specifically, ZFC_*.dat are Quantum Design MPMS3 measurement data files<br>*.oggu, *.opju ... OriginPro 2021 files (window and project files, respectively; https://www.originlab.com/)<br>*.png ... PNG image file<br>*.fit, *.mgp ... WiMDA files (fit and detector-grouping files, respectively; http://shadow.nd.rl.ac.uk/wimda/)<br>*.txt, *.out ... ASCII text file<br>*.rtf ... Rich text format file<br>*.tgz ... Compressed tar gzip file<br>*.zip ... Compressed zip file<br>*.docx ... Microsoft Word file (https://www.microsoft.com/en-us/microsoft-365/word)<br>*.mon ... Temperature monitor data from the Paul Scherrer Institute (PSI) Swiss Muon Source (SmuS) (GPS and HAL-9500 instruments)<br>*.pptx ... Microsoft PowerPoint presentation (https://www.microsoft.com/en-us/microsoft-365/powerpoint/)<br>*.pkl ... Python pickle format. Specifically, the saved state of MuFinder (https://gitlab.com/BenHuddart/mufinder/)<br>*.cif ... crystallographic information file<br>*.vesta ... VESTA crystal visualization file (https://jp-minerals.org/vesta/en/)<br>*.castep, *.cell ... CASTEP 22.1 output files (main output files and final crystal geometry files, respectively; https://www.castep.org/)<br>*.nb ... Wolfram Mathematica 13.0 notebook (https://www.wolfram.com/mathematica/)<br>File formats within compressed files:*.ascii, *.bin ... Raw muon measurement data from the Paul Scherrer Institute (PSI) Swiss Muon Source (SmuS) (GPS instrument)<br>*.log, *.nxs, *.nxs_v2, *.RAW ... Raw muon measurement data from the ISIS pulsed muon source (HiFi instrument)<br>*.mdu ... Raw muon measurement data from the Paul Scherrer Institute (PSI) Swiss Muon Source (SmuS) (HAL-9500 instrument)
DOI: 10.17632/8vjrkcs976
title: Data on the conditions of disrupted and natural ecosystems of Western Siberia in the areas of oil extraction.

description: Extraction of carbohydrates (including oil), which is crucial for modern civilization, is accompanied with significant negative impact on the biosphere and the planet as a whole, although negative activities associated with carbohydrate extraction are not unavoidable. Currently, oil and oil products are the highest priority pollutants of the environment. Certain territories of oil extraction are matched to the regions of ecological catastrophes. The solutions to ecological problems are complicated by insufficient research of geochemical processes occurring at the transformed natural complexes. Western Siberia is a region of the largest and most intensive oil extraction in Russia. Currently, around 70% of Russian raw hydrocarbon is extracted within Western Siberian lowlands. Presented data was collected during a largescale ecological monitoring of bog ecosystems of Western Siberia in 2007-2009 with a purpose of evaluation and documentation of conditions of disturbed natural complexes in comparison with undisturbed complexes. The main sources of impact on these territories are cluster pads and pipelines. Monitoring sites were located in the areas of oil and highly mineralized water spills and in the areas of exposed to emission flows from cluster pads. The team used GPS to record locations of monitoring sites, described and documented soil incisions as well as documented geobotanical descriptions. Chemo-analytical analysis was carried out for following indicators: pH (water extract), total solids (%, mg/kg), SOM (%), Cl- (mg/kg), Na+ (mg/kg), hydrolytic acidity (mmol / 100g), CEC, % (Al3+, Н+, Na+, Ca-, Mg-), CEC (mmol / 100g), total nitrogen (%), hydrocarbons (g/kg), Ba (mg/kg), V (mg/kg), Fe (mg/kg), Mn (mg/kg), Ni (mg/kg) Zn (mg/kg), SAC (mg-eq/100g). The data can be used by ecologists, pedologists and geobotanists for analysis of the processes of technogenic transformation of forest and taiga bog ecosystems.
DOI: 10.17632/c2fcz2kz9y
title: Hausa Sentiment Analysis Dataset 

description: Data were collected from Hausa/English Dictionary and annotated manually
DOI: 10.17632/h9hjtc9vhy
title: Alginate/whey protein isolate-based emulgel as an alternative margarine replacer in processed cheese: Impact on rheological, mechanical, nutritional, and sensory characteristics

description: Supplementary materials
DOI: 10.17632/sc6pty2d4x
title: Carga de trabajo y calidad de vida en docentes universitarios

description: Objetivo: Determinar la influencia entre la carga de trabajo y la calidad de vida de los docentes de una universidad peruana. Este fue un estudio con un enfoque cuantitativo, explicativo de corte transversal, aplicado en 326 empleados activos, docentes durante los años 2023 y 2024. Se administraron dos cuestionarios validados en Perú, con preguntas sobre sus datos sociodemográficos, calidad de vida SF-36 y la escala de carga de trabajo. Los datos fueron analizados mediante el software Studio R, loa análisis de correlación con R de Pearson y el modelo explicativo con métodos de regresión lineal.
DOI: 10.6084/m9.figshare.14642370.v1
title: WT progeny of WT grandmother.zip

description: Related to https://doi.org/10.1016/j.cub.2019.07.054
DOI: 10.6084/m9.figshare.21670391.v2
title: Supplementary file 1

description: Supplementary materials
DOI: 10.17632/ry5jsbpf36
title: Population response on the right to health in Nigeria and Uganda

description: The two datasets describe responses from the general population on some fundamental components of the right to health in Nigeria and Uganda. It includes data on their awareness of the existence of the right to health, their perceptions of some components of the right, the physical and economic accessibility of health centres, the challenges the population faces in accessing healthcare centres, the extent to which the population is aware of where to claim their right to health and their comfortability to do so when the right is violated.
DOI: 10.17632/x9dcpc2r5c
title: Quantics: A general purpose package for Quantum molecular dynamics simulations

description: Quantics is a general purpose program package to simulate the time-evolution of a molecular system by solving the time-dependent Schrödinger equation. The main code is based on the multi-configurational time-dependent Hartree (MCTDH) algorithm in various variants, including the powerful multilayer-MCTDH algorithm that has been used to propagate a wavefunction for up to 1000 degrees of freedom. MCTDH uses a contraction of traditional discrete basis set representations of the Hamiltonian and wavefunction, and Quantics includes a range of variable representation (DVR) grid basis sets and collocation methods. Input is via ascii text files and for molecules with analytical potential functions no programming is required. A library of potential functions is included to treat more complicated cases, and more functions can be added as required by the user. The code also includes the variational multi-configurational Gaussian (vMCG) method that is based on a Gaussian wavepacket expansion of the wavefunction. vMCG can be run in a “direct” manner (DD-vMCG), calculating the potential energy surfaces on-the-fly using a number of quantum chemistry programs. In addition to wavepacket propagation, Quantics can solve the time-independent Schrödinger equation for small systems and can solve the Liouville–von-Neumann equation to propagate density matrices. The Package includes auxiliary programs to help set up calculations and analyse the output. Quantics is a community code of the UK Collaborative Computational Project for Quantum Dynamics (CCPQ) and the European E-CAM project, an e-infrastructure for software development run by the Centre Européen de Calcul Atomique et Moléculaire (CECAM). Through this it has become a framework for general dynamics codes, for example enabling an external surface hopping code to use the Quantics input and operator interfaces.
DOI: 10.17632/z4jyxnx3vp
title: Organoid single-cell genomic atlas uncovers human-specific features of brain development

description: The human brain has undergone substantial change since humans diverged from chimpanzees and the other great apes1,2. However, the genetic and developmental programs that underlie this divergence are not fully understood. Here we have analysed stem cell-derived cerebral organoids using single-cell transcriptomics and accessible chromatin profiling to investigate gene-regulatory changes that are specific to humans. We first analysed cell composition and reconstructed differentiation trajectories over the entire course of human cerebral organoid development from pluripotency, through neuroectoderm and neuroepithelial stages, followed by divergence into neuronal fates within the dorsal and ventral forebrain, midbrain and hindbrain regions. Brain-region composition varied in organoids from different iPSC lines, but regional gene-expression patterns remained largely reproducible across individuals. We analysed chimpanzee and macaque cerebral organoids and found that human neuronal development occurs at a slower pace relative to the other two primates. Using pseudotemporal alignment of differentiation paths, we found that human-specific gene expression resolved to distinct cell states along progenitor-to-neuron lineages in the cortex. Chromatin accessibility was dynamic during cortex development, and we identified divergence in accessibility between human and chimpanzee that correlated with human-specific gene expression and genetic change. Finally, we mapped human-specific expression in adult prefrontal cortex using single-nucleus RNA sequencing analysis and identified developmental differences that persist into adulthood, as well as cell-state-specific changes that occur exclusively in the adult brain. Our data provide a temporal cell atlas of great ape forebrain development, and illuminate dynamic gene-regulatory features that are unique to humans.

This data page includes the expression and metadata matrices, as well as the Seurat objects, of the single cells and the constructed pseudocells used in the study, with different subsets used in the study separated.
DOI: 10.17632/7s8dhjhg3w
title: Global_transitions_from_dry_and_wet_extremes

description: This is the global model simulations pertaining to the following research paper: "Accelerated transition between dry and wet periods in a warming climate". It includes the CRU (http://www.cru.uea.ac.uk/), and the 10 multi-model ensemble simulations derived from CMIP6 datasets (https://esgf-node.llnl.gov/ projects/esgf-llnl/) for gridded monthly precipitation and potential evapotranspiration (PET) to calculate the 3-month SPEI index.
DOI: 10.17632/8j2g3csprk
title: Dataset of Tuberculosis Chest X-rays Images

description: The dataset comprises 2494 chest X-ray images of tuberculosis (TB) patients and 514 normal chest X-ray images, collected from a local hospital in Pakistan. All images have been processed and resized to a uniform dimension to ensure consistency and facilitate further analysis.
DOI: 10.17632/hv762x5dkz
title: Digital Surface Models, and Ground Displacement maps (E-W, N-S, and vertical) for the 2013 Mw7.7 Baluchistan, Pakistan, earthquake.

description: The files contain the pre- and post-event Digital Surface Models (DSMs), and the ground displacement maps (east-west, north-south and vertical components) for a 30-km long area of the 2013 Baluchistan earthquake rupture (Pakistan, Mw7.7). Original data are at 0.5 m ground resolution. For this repository, the ground displacement maps were resampled at 1 m, and the DSMs at 2 m. Georeferencing is in UTM. 
Description of the data, methods and results is available at:  Antoine, S. L., Klinger, Y., Delorme, A., & Gold, R. D. (2022). Off-fault deformation in regions of complex fault geometries: The 2013, Mw7.7, Baluchistan rupture (Pakistan). Journal of Geophysical Research: Solid Earth, 127, e2022JB024480. https://doi.org/10.1029/2022JB024480.
DOI: 10.17632/9w5z9zgm4g
title: What really matters in multi-storey building design?  A simultaneous sensitivity study of embodied carbon, construction cost, and operational energy — Supplementary Data

description: This data supports the paper "What really matters in multi-storey building design? A simultaneous sensitivity study of embodied carbon, construction cost, and operational energy", by the same authors, submitted in 2022. 
It comprises:
- the raw data (dataset of generated building designs) from which the figures in the paper were derived
- a list of anonymised span tables which are used as input data for the results presented in the paper
- an exemplary IDF file used for building energy modelling with EnergyPlus
- a vailidation of the energy modelling using a results from literature as described in the SI of the paper
DOI: 10.17632/tnzk2jvffs
title: Chemical Kinetics Bayesian Inference Toolbox (CKBIT)

description: The robust estimation of chemical kinetic parameters and their associated uncertainty is essential in the field of chemistry and catalysis. The Chemical Kinetics Bayesian Inference Toolbox (CKBIT) is a Python software library introduced to enable users to implement advanced Bayesian inference techniques for kinetic parameter estimation and uncertainty quantification. Leveraging functionalities of other open source Python packages and offering simplified implementation through minimal user-required coding and straightforward Excel input files, CKBIT aspires to make the inference method easily accessible for chemical kinetics. CKBIT provides maximum a posteriori, Markov chain Monte Carlo, and variational inference estimation options. Users may apply these functionalities to estimate activation energies, reaction orders, and pre-exponential terms from chemical reaction data from batch reactors, continuous stirred-tank reactors, and plug flow reactors. The availability of prior distribution specification and the implementation of hierarchical modeling in CKBIT provide a heightened level of accuracy in estimates of kinetic parameters and their uncertainties.
DOI: 10.17632/96sfy77s3z
title: Ria Formosa barrier island shorelines and long-term cross-shore rates between 1952 and 2014

description: These are results of the EVREST (Evolution and Resilience of Barrier Island Systems) project. http://evrest.cvtavira.pt/ Details on the analysis can be found in https://doi.org/10.1016/j.geomorph.2019.07.006 The morphological evolution analysis was based on aerial photographs that cover the period from 1952 to 2014. Distinct geomorphological units were digitised and analysed, using four boundaries: a) The ocean-side coastline (ca. Mean High Water Level: MHWL). The proxies used were the upper debris line or the beach scarp, in cases of debris absence. b) The dune line (ca. Mean Higher High Water Level: MHHWL), using the ocean-side limit of dune vegetation, as proxy for the position of the foredune foot. c) The backbarrier coastline in the lagoon-side (ca. MHWL). In backbarrier stretches with perched marshes, the limit between the upper-marsh vegetation and the barrier/dune was used, identified by the transition to bushy (more rugose, darker) vegetation. In backbarrier beaches, the debris line or beach scarp/dune limit (if no debris was present) were used. d) The marsh-edge line (transition from marsh to tidal flat; ca. MWL). In cases of vegetated tidal flats (e.g. seagrasses), the boundary between emergent and submerged vegetation was used, identified by differences in colour and texture. Otherwise, the edge of the marsh vegetation was mapped. The boundary lines of these 4 geomorphological units (1952-2014) are given in EVREST_Coastlines.kmz Weighted Linear Regression (WLR) cross-shore rates of these boundary lines (going from from seaward to landward a) ocean-side coastline, b) dune line, c) backbarier coastline and d) marsh-edge line) for 1952-2014 are given in EVREST_WLR_rates.kmz Weighted Least Squares Regression was performed on the entire dataset, using the Digital Shoreline Analysis Tool that defines the shoreline changes along transects, cast perpendicular to a reference baseline. Weighted Linear Regression (WLR) rates were preferred over simple linear ones, as they are weighted towards more accurate coastline positions. Coastline uncertainty (total position error) was assessed as the sum of squares of all measurement errors.
DOI: 10.17632/9kpt7k5dd3
title: Datasets of Chemical Compounds in Three Different Species of Aquilaria using GC-MS coupled with GC-FID Analysis

description: The datasets presented in this article consist of detailed chemical analyses of three different species of Aquilaria using GC-MS and GC-FID techniques. The datasets consist of two samples from each of the three species of Aquilaria, specifically A. crassna (designated as ACS1 and ACS2), A. malaccensis (designated as AMS1 and AMS2), and A. subintegra (designated as ASS1 and ASS2). The datasets include information on the retention times, Tr (min), peak area (%), identified compounds, molecular formulas, molecular weights, identification modes, and similar chemical compounds found in every species of Aquilaria. in each sample, were meticulously tabulated in MS Excel. Concurrently, the chemical analyses collectively unveil that agarwood oil is predominantly composed of a mixture of compounds. These compounds can be categorized into four distinct groups: carboxylic acid, other compounds, sesquiterpene, and sesquiterpenoid. This comprehensive dataset facilitates a thorough understanding of the chemical profiles and analytical nuances across the different Aquilaria species, enhancing the robustness and interpretability of the datasets.
DOI: 10.17632/p829wbw6zs
title: Replication data: The role of personal experiences in Norwegian perceptions of climate change

description: This is the replication data for the article: Lujala, Päivi and Haakon Lein 2020. The role of personal experiences in Norwegian perceptions of climate change. Norsk Geografisk Tidsskrift–Norwegian Journal of Geography For details on the data and the analysis, please, see the article.
DOI: 10.17632/rd4v52p6ks
title: A systematic review of impact of spinal cord injury on costs and health related quality of life

description: To systematically reviews the QoL burden and costs of spinal cord injury on health services, patients, and wider society