cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14059509
title: Data for Viscotaxis of Beating Flagella at Surfaces

description: Data for the publication Viscotaxis of Beating Flagella at Surfaces by S. Anand, J. Elgeti, and G.Gompper

 

All data and Analysis scripts are contained in the zip file

-----In Viscotaxis1.ipynb    Run the script from the start to the end    you will get Fig.5 and Fig.6(a),(b)    -----In Viscotaxis2.ipynb    Run the script from the start to the end    you will get Fig.7, Fig.8, Fig.10(a),(b) and Fig.14    -----In Viscotaxis3.ipynb    Run the script from the start to the end    you will get Fig.3(a),(b),(c), Fig.12, Fig.13(a),(b), Fig.15    -----In Taxis_yaxis.ipynb    Run the script from the start to the end    you will get Fig.11 and Fig.9    --------------------------------------x-----------------------------------------------x------------------------------------------------------x--------------------------

Fig.2 is generated in the VMD software.The data is in the path               Polymers_New/flagella_Model_Varying_viscosity_Init_rotat_vmd/...........    Fig.1 and Fig.4 are schematic diagrams
DOI: 10.5281/zenodo.14059510
title: Data for Viscotaxis of Beating Flagella at Surfaces

description: Data for the publication Viscotaxis of Beating Flagella at Surfaces by S. Anand, J. Elgeti, and G.Gompper

 

All data and Analysis scripts are contained in the zip file

-----In Viscotaxis1.ipynb    Run the script from the start to the end    you will get Fig.5 and Fig.6(a),(b)    -----In Viscotaxis2.ipynb    Run the script from the start to the end    you will get Fig.7, Fig.8, Fig.10(a),(b) and Fig.14    -----In Viscotaxis3.ipynb    Run the script from the start to the end    you will get Fig.3(a),(b),(c), Fig.12, Fig.13(a),(b), Fig.15    -----In Taxis_yaxis.ipynb    Run the script from the start to the end    you will get Fig.11 and Fig.9    --------------------------------------x-----------------------------------------------x------------------------------------------------------x--------------------------

Fig.2 is generated in the VMD software.The data is in the path               Polymers_New/flagella_Model_Varying_viscosity_Init_rotat_vmd/...........    Fig.1 and Fig.4 are schematic diagrams
DOI: 10.5281/zenodo.15056896
title: I-129 and U-236 data from the ODEN expedition SO21 for the Synoptic Arctic Survey

description: Supplement table to publication "Changes in Atlantic Water circulation in the central Arctic Ocean between 2011 and 2021 inferred from tracer observations", containing I-129 and U-236 data collected during the ODEN expedition SO21 for the Synoptic Arctic Survey (SAS2021) to the central Arctic Ocean, as well as metadata, hydrographic data, water mass fractions, and results from the TTD model.

Metadata and hydrographic data are from Heuzé, Céline; Karam, Salar; Muchowski, Julia; Padilla, Alexandra; Stranne, Christian; Gerke, Lennart; Tanhua, Toste; Ulfsbo, Adam; Laber, Christien; Stedmon, Colin A (2022): Physical Oceanography measured on bottle water samples during ODEN expedition SO21 for the Synoptic Arctic Survey [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.951264
DOI: 10.5281/zenodo.15056897
title: I-129 and U-236 data from the ODEN expedition SO21 for the Synoptic Arctic Survey

description: Supplement table to publication "Changes in Atlantic Water circulation in the central Arctic Ocean between 2011 and 2021 inferred from tracer observations", containing I-129 and U-236 data collected during the ODEN expedition SO21 for the Synoptic Arctic Survey (SAS2021) to the central Arctic Ocean, as well as metadata, hydrographic data, water mass fractions, and results from the TTD model.

Metadata and hydrographic data are from Heuzé, Céline; Karam, Salar; Muchowski, Julia; Padilla, Alexandra; Stranne, Christian; Gerke, Lennart; Tanhua, Toste; Ulfsbo, Adam; Laber, Christien; Stedmon, Colin A (2022): Physical Oceanography measured on bottle water samples during ODEN expedition SO21 for the Synoptic Arctic Survey [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.951264
DOI: 10.15468/dl.j2evkc
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kenya",
 "TaxonKey is Loxodonta africana (Blumenbach, 1797)",
 "Year 1000-2000"
 ]
}

 The dataset includes 150 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018572-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.agd46m
title: Occurrence Download

description: A dataset containing 17158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Spain, Portugal)",
 "TaxonKey is Aedes albopictus (Skuse, 1894)"
 ]
}

 The dataset includes 17158 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018573-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmzbc8
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Netherlands",
 "Month is one of (January, November, December)",
 "TaxonKey is Ardea alba Linnaeus, 1758",
 "Year 1998-2002"
 ]
}

 The dataset includes 90 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018574-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/3ber-9waj
title: Measurement of PBDEs (polybrominated diphenyl ethers) at Norunda Stenen

description: Measurement of PBDEs (polybrominated diphenyl ethers) at Norunda Stenen
DOI: 10.48597/72hv-sded
title: Measurement of Chlordane at Norunda Stenen

description: Measurement of Chlordane at Norunda Stenen
DOI: 10.48597/awtd-82tq
title: Measurement of MCCPs and SCCPs at Råö

description: Measurement of MCCPs and SCCPs at Råö
DOI: 10.48597/azfs-wp3p
title: Measurement of HBCD at Råö

description: Measurement of HBCD at Råö
DOI: 10.48597/b2uh-6jt2
title: Measurement of POPs (persistent organic pollutants) at Råö

description: Measurement of POPs (persistent organic pollutants) at Råö
DOI: 10.48597/bxg8-7r5f
title: Measurement of PAHs (polycyclic aromatic hydrocarbons) at Hallahus

description: Measurement of PAHs (polycyclic aromatic hydrocarbons) at Hallahus
DOI: 10.48597/cjgk-2ag8
title: Measurement of Chlordane at Råö

description: Measurement of Chlordane at Råö
DOI: 10.48597/g6y4-ax86
title: Measurement of PCDD/F at Råö

description: Measurement of PCDD/F at Råö
DOI: 10.48597/jesd-2ezn
title: Measurement of PCDD/F at Norunda Stenen

description: Measurement of PCDD/F at Norunda Stenen
DOI: 10.48597/m9yb-zxf7
title: Measurement of POPs (persistent organic pollutants) at Råö

description: Measurement of POPs (persistent organic pollutants) at Råö
DOI: 10.48597/quus-5t2k
title: Measurement of MCCPs and SCCPs at Norunda Stenen

description: Measurement of MCCPs and SCCPs at Norunda Stenen
DOI: 10.48597/qag7-6n3e
title: Measurement of DBDPE and POPs (persistent organic pollutants) at Norunda Stenen

description: Measurement of DBDPE and POPs (persistent organic pollutants) at Norunda Stenen
DOI: 10.15468/dl.584mdu
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypsicera curvator (Fabricius, 1793)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018576-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7jmpks
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus charcasana Trel. ex A.Camus"
 ]
}

 The dataset includes 10 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018577-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8x54nq
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus chartacea Trel."
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018578-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czkkmz
title: Occurrence Download

description: A dataset containing 941 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus chihuahuensis Trel."
 ]
}

 The dataset includes 941 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018579-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rxnp5
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Netherlands",
 "Month is one of (January, November, December)",
 "TaxonKey is Ardea alba Linnaeus, 1758",
 "Year 1993-1997"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018580-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znqayf
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus chimaltenangana Trel."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018581-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14139772
title: Model_and_data
DOI: 10.5281/zenodo.14139771
title: Model_and_data

description: 1、lam_journal_data.tar.gz: Model code, analysis data, ploting scripts.

2、grid_static.tar.gz: grid and static files to run the model.

3、gvr_lam_data_preproc.tar.gz: scripts to pre process intial and boundary data for global and regional models. 

With grid_static.tar.gz and gvr_lam_data_preproc.tar.gz, all input data necessary for running the global and regional models can be prepared.
DOI: 10.5281/zenodo.15044650
title: Model_and_data

description: 1、lam_journal_data.tar.gz: Model code, analysis data, ploting scripts.

2、grid_static.tar.gz: grid and static files to run the model.

3、gvr_lam_data_preproc.tar.gz: scripts to pre process intial and boundary data for global and regional models. 

With grid_static.tar.gz and gvr_lam_data_preproc.tar.gz, all input data necessary for running the global and regional models can be prepared.
DOI: 10.15468/dl.cj7zdw
title: Occurrence Download

description: A dataset containing 11245 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus chrysolepis Liebm."
 ]
}

 The dataset includes 11245 records from 196 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018582-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15057072
title: Neurospora RIP mutation

description: # Neurospora RIP mutation

Storage of code and files used in N.crassa RIP analysis

## Genome mutation calling

Processing of fastq files into bams and vcfs. Filtering reliable mutations

## Methylation quantification

Using Bismark to process the raw data and prodived methylation quantification results.

##sly1_mutation

Code and files used in Sly1-1 mutations

 

## attached files

Some files containing the information used in this analysis

### RLR_refseq_annotation.fas

The sequences of the RLR segments used in the study.

### RLR_refseq_region.bed

The annotation of the RLR_refseq in bed format

### Dup_window_category_w200_v6.0based.bed

Annotating the duplication region with the four criterias in the study. In bed format.
DOI: 10.5281/zenodo.15057073
title: Neurospora RIP mutation

description: # Neurospora RIP mutation

Storage of code and files used in N.crassa RIP analysis

## Genome mutation calling

Processing of fastq files into bams and vcfs. Filtering reliable mutations

## Methylation quantification

Using Bismark to process the raw data and prodived methylation quantification results.

##sly1_mutation

Code and files used in Sly1-1 mutations

 

## attached files

Some files containing the information used in this analysis

### RLR_refseq_annotation.fas

The sequences of the RLR segments used in the study.

### RLR_refseq_region.bed

The annotation of the RLR_refseq in bed format

### Dup_window_category_w200_v6.0based.bed

Annotating the duplication region with the four criterias in the study. In bed format.
DOI: 10.23645/epacomptox.28632590
title: 7:3 Fluorotelomer alcohol (7:3 FTOH) ETAP Supporting Files

description: Supporting files for EPA Transcriptomics Assessment Product (ETAP) on 7:3 Fluorotelomer alcohol (7:3 FTOH, DTXSID50382621, CASRN: 25600-66-2). Files included are: 1) OECD Omics Reporting Framework (OORF) study information, 2) Meta-data for individual transcriptomics samples, 3) Body weight information for individual animals, 4) BMDExpress2 project files (*.bm2) for each tissue and sex analyzed.Search for CCTE records in EPA’s Science Inventory by typing in the title at this link:https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.15468/dl.u7dcrd
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus conduplicans Chun"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018584-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mt846q
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Netherlands",
 "Month is one of (January, November, December)",
 "TaxonKey is Ardea alba Linnaeus, 1758",
 "Year 1988-1992"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018585-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbe5sk
title: Occurrence Download

description: A dataset containing 23239 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Enterolobium cyclocarpum (Jacq.) Griseb.)"
 ]
}

 The dataset includes 23239 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018583-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9dijhdk
title: Magnetotelluric Data from the San Andreas Fault, Loma Prieta CA, 1989-1990

description: The U.S. Geological Survey (USGS) Geology, Geophysics and Geochemistry Science Center (GGGSC) collaborated with the USGS Science Analytics and Synthesis (SAS) team to preserve and release a subset of magnetotelluric data from the San Andreas Fault in Loma Prieta, California. The San Andreas Fault data were collected by the Branch of Geophysics, a precursor to the now GGGSC, between 1989 and 1994. The magnetotelluric data selected for this preservation project were collected in 1989 and 1990 using USGS portable truck mounted systems that measure the distribution of electrical conductivity beneath the surface of the earth. Truck mounted systems of this era output data to 3.5&rdquo; discs, from which data were recovered and transformed to binary or ASCII formats using proprietary software. This USGS data release includes the original binary and ASCII data files and derivative EDI files (Wight, 1988), a common modern format for magnetotelluric modelling, created using Python-based software developed by the SAS team.

References Cited
Wight, D.E., 1988, MT/EMAP Data Interchange Standard, Technical standards committee report, Society of Exploration Geophysicists, isbn=9780931830617, https://www.seg.org/Portals/0/SEG/News%20and%20Resources/Technical%20Standards/seg_mt_emap_1987.pdf.
DOI: 10.15468/dl.hepjwz
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus copeyensis C.H.Mull."
 ]
}

 The dataset includes 241 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018587-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4gv6t
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyposoter ebeninus (Gravenhorst, 1829)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018588-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8cffym
title: Occurrence Download

description: A dataset containing 248 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus convallata Trel."
 ]
}

 The dataset includes 248 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018586-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8e6sxt
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus dalechampii Ten."
 ]
}

 The dataset includes 231 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018589-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6096/1011
title: Airborne hyperspectral data

description: Hyperspectral imagery was acquired with a AISA FENIX 1K camera collecting data from the visible to the shortwave infrared [0.38 - 2.5 µm] in 420 spectral bands.

The provided dataset is divided in 25 tiles (~14 Go each tile)

Camera calibration was achieved in lab and controlled during the flight when passing over reference targets.

Atmospheric correction was done with COCHISE, using atmospheric profiles from METEO-FRANCE and aerosols in situ measurements provided by a CIMEL spectroradiometer.
Ortho-rectification was achieved thanks to DEM provided by RGE ALTI 1m database of IGN.

Camera caracteristics:
Swath: 1024 m ; 
Ground Sample Distance: 1 m ;
Spectral resolution:
 ~3.6 nm between 380 - 970 nm ; 
~7.8 nm between 970 - 2500 nm.

The data are  provided as ortho-rectified tiles (UTM 31N) in surface reflectance in ENVI format. Check the README file to get more information on the data organisation and characteristics.
DOI: 10.15468/dl.293jst
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus dilacerata Hickel & A.Camus"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018590-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36zy8q
title: Occurrence Download

description: A dataset containing 288 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus estremadurensis O.Schwarz"
 ]
}

 The dataset includes 288 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018594-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7cjjp
title: Occurrence Download

description: A dataset containing 4366 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus durata Jeps."
 ]
}

 The dataset includes 4366 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018592-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.948tnv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Netherlands",
 "Month is one of (January, November, December)",
 "TaxonKey is Ardea alba Linnaeus, 1758",
 "Year 1983-1987"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018593-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdpb7v
title: Occurrence Download

description: A dataset containing 5709 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus douglasii Hook. & Arn."
 ]
}

 The dataset includes 5709 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018591-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvqujv
title: Occurrence Download

description: A dataset containing 120790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Continent is Europe",
 "Country is one of (France, Switzerland, Italy, Austria, Germany, Slovenia, Liechtenstein, Andorra)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Capra ibex Linnaeus, 1758",
 "Year 2000-2025"
 ]
}

 The dataset includes 120790 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018575-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.