cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5522/04/21749750.v1
title: LabArchives ELN Exports (EGT, DMK, DGS) for the OSA Series 2 Paper titled "Open Source Antibiotics - Simple Diarylimidazoles are Potent Against Methicillin Resistant Staphylococcus Aureus"

description: LabArchives ELN exports for EGT, DMK and DGS with experimental details relating to the OSA Series 2 paper titled "Open Source Antibiotics - Simple Diarylimidazoles are Potent Against Methicillin Resistant Staphylococcus Aureus". Experiments were performed at UCL. Detailed procedures, characterisation (NMR, LCMS) and raw data files are provided with each reaction write-up for all intermediates and biologically tested final compounds. A list of all OSA Series 2 compounds with associated biology data (MRSA potencies, physicochemical properties, metabolic properties, toxicity) may be also found here.
DOI: 10.20375/0000-000f-7dba-4
title: Documentation of Data Collection.pdf
DOI: 10.20375/0000-000f-7dbb-3
title: terms_en_1999-2023.csv.zip
DOI: 10.20375/0000-000f-7dbc-2
title: terms_ru_1999-2023.csv.zip
DOI: 10.20375/0000-000f-7dbd-1
title: transcripts_en_2023-01-16.json.zip
DOI: 10.20375/0000-000f-7dbe-0
title: transcripts_ru_2023-01-16.json.zip
DOI: 10.48320/7e016752-2438-46c9-9526-d35d41c823a2
title: The President’s Words: A Term Frequency Analysis of Putin’s and Medvedev’s Statements in Official Kremlin Transcripts
DOI: 10.5517/ccdc.csd.cc1q9247
title: CCDC 1587638: Experimental Crystal Structure Determination

description: Related Article: Ulrich Flörke, Jochen Ortmeyer|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bts98
title: CCDC 2169730: Experimental Crystal Structure Determination

description: Related Article: Ae Ran Lim, Huiyeong Ju|2022|RSC Advances|12|28720|doi:10.1039/D2RA04834E
description: Related Article: Ae Ran Lim, Huiyeong Ju|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c2zt8
title: CCDC 2177620: Experimental Crystal Structure Determination

description: Related Article: Yuliya A. Bryleva, Karina M. Yzhikova, Alexander V. Artem'ev, Maria P. Davydova, Mariana I. Rakhmanova, Evgenia V. Polyakova, Ludmila A. Glinskaya, Denis G. Samsonenko|2022|Polyhedron|231|116251|doi:10.1016/j.poly.2022.116251
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7543889
title: Blockchain and Smart Contracts Topics on Reddit

description: This dataset includes posts related to Ethereum, Stellar, Algorand, Hyperledger, and smart contracts subreddits. The dataset includes URL, title, author, number of comments, and technology (Ethereum, Stellar, etc.). This dataset is used to spot relevant smart contracts topics Reddit's community discusses. Please consider that this dataset will be extended with more information and smart contracts platform-related subreddits.
DOI: 10.5281/zenodo.7543888
title: Blockchain and Smart Contracts Topics on Reddit

description: This dataset includes posts related to Ethereum, Stellar, Algorand, Hyperledger, and smart contracts subreddits. The dataset includes URL, title, author, number of comments, and technology (Ethereum, Stellar, etc.). This dataset is used to spot relevant smart contracts topics Reddit's community discusses. Please consider that this dataset will be extended with more information and smart contracts platform-related subreddits.
DOI: 10.25625/frpmpy/dvza01
title: ENM_occurrence_data_only.tiff

description: :unav
DOI: 10.25625/frpmpy/ilipae
title: Allocebus_trichotis_Fundamental_niche.tiff

description: :unav
DOI: 10.25625/frpmpy/lzfuon
title: ENM_full_data.tiff

description: :unav
DOI: 10.25625/frpmpy/zk4jeg
title: Allocebus_trichotis_EOO.tiff

description: :unav
DOI: 10.25625/frpmpy/4abqqh
title: Information on supplementary data.tab

description: :unav
DOI: 10.25625/frpmpy/yui12m
title: ENM_Literature_data_only.tiff

description: :unav
DOI: 10.25625/frpmpy/bnrnbs
title: Allocebus_trichotis_AOO.tif

description: :unav
DOI: 10.25625/frpmpy/dvtqre
title: Allocebus trichotis Manuscript - supplementary information.tab

description: Supplementary tables S1-3
DOI: 10.25625/frpmpy
title: Ecological niche models for Allocebus trichotis in Madagascar

description: Available are raster files for the production of maps on the potential distribution of Allocebus trichotis in Madagascar. Three raw ENMs are available produced with literature data only, occurrence data only and a combination of both datasets. We further provide the modeled fundamental niche, the Extent of Occurrence and Area of Occupancy of A. trichotis.
DOI: 10.6084/m9.figshare.21908397
title: Supplementary Material for: Age-Dependent Effects of Acute Kidney Injury on End-Stage Kidney Disease and Mortality in Patients with Moderate to Severe Chronic Kidney Disease

description: <b><i>Introduction:</i></b> Old age has been considered as a positive modifier of chronic kidney disease (CKD), but the progression of CKD is often accelerated by acute kidney injury (AKI) in older adults. This study aimed to investigate this paradoxical interplay and identify age-specific predictors of end-stage kidney disease (ESKD). <b><i>Methods:</i></b> This retrospective cohort included 6,101 patients with CKD stage 3B-5 followed at a single center during 2005–2018. Participants were stratified into four age groups to explore age-dependent influences on the risk of ESKD and all-cause mortality. Multivariate Cox proportional hazard regression model with competing risk analysis was used to identify predictors of outcomes. <b><i>Results:</i></b> During a median follow-up of 2.68 years, 1,650 (27.0%) patients developed ESKD and 541 (8.9%) patients died. The rate of ESKD decreased with advancing age, being lowest in the very old-aged (&gt;75 years) group who displayed the slowest rate of estimated glomerular filtration rate (eGFR) decline. Multivariate Cox proportional hazard regression adjusted for competing death showed that younger ages, compared with patients aged &gt;75 years, together with AKI episodes and several traditional risk factors were identified as predictors for ESKD. The impact of AKI episodes on ESKD development was most prominent in patients aged &gt;75 years. These results were confirmed with subgroup analyses in patients with outcomes of different ages. <b><i>Conclusion:</i></b> Older adults with CKD exhibited a slower decline rate of eGFR, yet they were more likely to develop ESKD following AKI episodes. These results suggest tackling AKI is needed to prevent accelerated initiation of renal replacement therapy in elderly patients with pre-existing CKD.
DOI: 10.6084/m9.figshare.21908397.v1
title: Supplementary Material for: Age-Dependent Effects of Acute Kidney Injury on End-Stage Kidney Disease and Mortality in Patients with Moderate to Severe Chronic Kidney Disease

description: <b><i>Introduction:</i></b> Old age has been considered as a positive modifier of chronic kidney disease (CKD), but the progression of CKD is often accelerated by acute kidney injury (AKI) in older adults. This study aimed to investigate this paradoxical interplay and identify age-specific predictors of end-stage kidney disease (ESKD). <b><i>Methods:</i></b> This retrospective cohort included 6,101 patients with CKD stage 3B-5 followed at a single center during 2005–2018. Participants were stratified into four age groups to explore age-dependent influences on the risk of ESKD and all-cause mortality. Multivariate Cox proportional hazard regression model with competing risk analysis was used to identify predictors of outcomes. <b><i>Results:</i></b> During a median follow-up of 2.68 years, 1,650 (27.0%) patients developed ESKD and 541 (8.9%) patients died. The rate of ESKD decreased with advancing age, being lowest in the very old-aged (&gt;75 years) group who displayed the slowest rate of estimated glomerular filtration rate (eGFR) decline. Multivariate Cox proportional hazard regression adjusted for competing death showed that younger ages, compared with patients aged &gt;75 years, together with AKI episodes and several traditional risk factors were identified as predictors for ESKD. The impact of AKI episodes on ESKD development was most prominent in patients aged &gt;75 years. These results were confirmed with subgroup analyses in patients with outcomes of different ages. <b><i>Conclusion:</i></b> Older adults with CKD exhibited a slower decline rate of eGFR, yet they were more likely to develop ESKD following AKI episodes. These results suggest tackling AKI is needed to prevent accelerated initiation of renal replacement therapy in elderly patients with pre-existing CKD.
DOI: 10.17632/d2sxxdh4ty.1
title: LINF_350009100

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.20352733
title: Relations between higher- and lower-order alcohol and cannabis expectancies and simultaneous use frequency among undergraduate dual users

description: Simultaneous alcohol and cannabis (i.e. marijuana; [SAM]) use is prevalent among college students. There is limited research on expectancy effects for SAM use, which are known correlates of use frequency and mediators of treatment outcomes. We examined the unique associations of both positive and negative alcohol and cannabis expectancies with frequency of SAM use among college students. Participants were 1012 college students (70.9% female, 51.8% white, <i>M</i><sub>age</sub> = 19.63) from seven US universities who reported past-month alcohol and cannabis use (77.2% of the sample reported SAM use). Students completed measures of past-month typical weekly alcohol and cannabis frequency and quantity, alcohol and cannabis expectancies, and SAM frequency through an online self-reported survey. A negative binomial regression revealed that higher-order positive, but not negative, alcohol and cannabis expectancies were significant predictors of SAM frequency above and beyond frequency of alcohol and cannabis use, biological sex, and whether the survey was completed pre- or post-COVID-19 campus closures. Specifically, higher frequency SAM use was associated with weaker positive alcohol and stronger positive cannabis expectancies. A second negative binomial regression including lower-order expectancies found that SAM frequency was associated with weaker social and cognitive and behavioral impairment alcohol expectancies and stronger sexual and social facilitation cannabis and liquid courage alcohol expectancies, specifically. Results highlight the importance of comprehensively examining both higher- and lower-order alcohol and cannabis expectancies when examining SAM frequency, and provide avenues of targeted intervention to reduce SAM use among dual users.
DOI: 10.6084/m9.figshare.21908406
title: Supplementary Material for: Effect of Orthostatic Hypotension on Kidney Function

description: <b><i>Background:</i></b> The association between orthostatic hypotension (OH) and long-term changes in kidney function in the general population is not yet well known. <b><i>Methods:</i></b> We performed a population-based cohort study based on data from the Korean Genome and Epidemiology Study (KoGES). The primary exposure was the presence of classic OH, defined as a postural drop in blood pressure (systolic blood pressure ≥20 mm Hg and/or diastolic blood pressure ≥10 mm Hg) at 2 min of standing after 5 min of supine rest. The primary outcome was a 12-year change in kidney function, assessed by subtracting the baseline estimated glomerular filtration rate (eGFR) from the eGFR at 12 years of follow-up. <b><i>Results:</i></b> Our study included 5,905 participants (median [interquartile range] age, 49 [44–58] years; 46% males) who met inclusion and exclusion criteria. Classic OH was detected in 268 (4.5%) of the total participants. In the regression analyses, participants with classic OH had a greater decline in eGFR over 12 years compared with those without classic OH; the fully adjusted beta coefficient and 95% confidence intervals (95% CIs) were −1.74 (−3.07, −0.40). Furthermore, classic OH was associated with 27% greater risk of a 30% decline in kidney function compared with those without classic OH; fully adjusted hazard ratio and 95% CIs were 1.27 (1.07, 1.49). <b><i>Conclusions:</i></b> Classic OH can negatively affect long-term kidney function in the general population.
DOI: 10.6084/m9.figshare.20352733.v1
title: Relations between higher- and lower-order alcohol and cannabis expectancies and simultaneous use frequency among undergraduate dual users

description: Simultaneous alcohol and cannabis (i.e. marijuana; [SAM]) use is prevalent among college students. There is limited research on expectancy effects for SAM use, which are known correlates of use frequency and mediators of treatment outcomes. We examined the unique associations of both positive and negative alcohol and cannabis expectancies with frequency of SAM use among college students. Participants were 1012 college students (70.9% female, 51.8% white, <i>M</i><sub>age</sub> = 19.63) from seven US universities who reported past-month alcohol and cannabis use (77.2% of the sample reported SAM use). Students completed measures of past-month typical weekly alcohol and cannabis frequency and quantity, alcohol and cannabis expectancies, and SAM frequency through an online self-reported survey. A negative binomial regression revealed that higher-order positive, but not negative, alcohol and cannabis expectancies were significant predictors of SAM frequency above and beyond frequency of alcohol and cannabis use, biological sex, and whether the survey was completed pre- or post-COVID-19 campus closures. Specifically, higher frequency SAM use was associated with weaker positive alcohol and stronger positive cannabis expectancies. A second negative binomial regression including lower-order expectancies found that SAM frequency was associated with weaker social and cognitive and behavioral impairment alcohol expectancies and stronger sexual and social facilitation cannabis and liquid courage alcohol expectancies, specifically. Results highlight the importance of comprehensively examining both higher- and lower-order alcohol and cannabis expectancies when examining SAM frequency, and provide avenues of targeted intervention to reduce SAM use among dual users.
DOI: 10.6084/m9.figshare.21908406.v1
title: Supplementary Material for: Effect of Orthostatic Hypotension on Kidney Function

description: <b><i>Background:</i></b> The association between orthostatic hypotension (OH) and long-term changes in kidney function in the general population is not yet well known. <b><i>Methods:</i></b> We performed a population-based cohort study based on data from the Korean Genome and Epidemiology Study (KoGES). The primary exposure was the presence of classic OH, defined as a postural drop in blood pressure (systolic blood pressure ≥20 mm Hg and/or diastolic blood pressure ≥10 mm Hg) at 2 min of standing after 5 min of supine rest. The primary outcome was a 12-year change in kidney function, assessed by subtracting the baseline estimated glomerular filtration rate (eGFR) from the eGFR at 12 years of follow-up. <b><i>Results:</i></b> Our study included 5,905 participants (median [interquartile range] age, 49 [44–58] years; 46% males) who met inclusion and exclusion criteria. Classic OH was detected in 268 (4.5%) of the total participants. In the regression analyses, participants with classic OH had a greater decline in eGFR over 12 years compared with those without classic OH; the fully adjusted beta coefficient and 95% confidence intervals (95% CIs) were −1.74 (−3.07, −0.40). Furthermore, classic OH was associated with 27% greater risk of a 30% decline in kidney function compared with those without classic OH; fully adjusted hazard ratio and 95% CIs were 1.27 (1.07, 1.49). <b><i>Conclusions:</i></b> Classic OH can negatively affect long-term kidney function in the general population.
DOI: 10.17632/skn6r6dpjs.1
title: LINF_350008800

description: ATP-dependent DEAD-box RNA helicase | DHH1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/9fn7y3d54s.1
title: AJJ SAROVAR

description: IMPACT OF URBANIZATION
DOI: 10.17632/tnkpz57ytd.2
title: Malaysia Fuel Price Data Set 1

description: Cleaned data for Modelling the  Malaysian fuel price, Ron 97
DOI: 10.17632/zxjnrpmwd8.1
title: ARIMAX Modelling of Ron97 Price with Crude Oil Price as an Exogenous Variable in Malaysian 

description: The primary data used in the paper are the published weekly price of Ron97 (CompareHero.my, 2020; Malaysia, 2021; The Ministry of Domestic Trade and Consumer Affairs, 2020) , daily crude oil price in barrels (WTI,  BRENT and OPEC) (EIA, 2020; OPEC, 2020) and daily foreign exchange rate (Selling rate) of the Ringgit per US dollars (Bank Negara, 2020). The data is pre-processed to clean the data and standardize the data for the modelling process. The crude oil price and foreign exchange rates are converted to weekly averages. Daily missing data are replaced with weekly averages.  The foreign exchange rates, (G) in Ringgits per US dollar(RM/USD)  (Bank Negara, 2020), is  multiplied with the international crude oil price (X) to convert ringgits per barrel( RM/bbl), (I),  using Equation(2). The crude oil price are converted to ringgit per litre using the Barrel to Litre Metric Conversion (M)(Ltd, 2020), as shown in Equation(3).
DOI: 10.17632/zxjnrpmwd8.2
title: ARIMAX Modelling of Ron97 Price with Crude Oil Price as an Exogenous Variable in Malaysian 

description: The primary data used in the paper are the published weekly price of Ron97 (CompareHero.my, 2020; Malaysia, 2021; The Ministry of Domestic Trade and Consumer Affairs, 2020) , daily crude oil price in barrels (WTI,  BRENT and OPEC) (EIA, 2020; OPEC, 2020) and daily foreign exchange rate (Selling rate) of the Ringgit per US dollars (Bank Negara, 2020). The data is pre-processed to clean the data and standardize the data for the modelling process. The crude oil price and foreign exchange rates are converted to weekly averages. Daily missing data are replaced with weekly averages.  The foreign exchange rates, (G) in Ringgits per US dollar(RM/USD)  (Bank Negara, 2020), is multiplied with the international crude oil price (X) to convert ringgits per barrel( RM/bbl), (I),  using Equation(2). The crude oil price are converted to ringgit per litre using the Barrel to Litre Metric Conversion (M)(Ltd, 2020), as shown in Equation(3).
DOI: 10.17632/pnkg2mttk7.1
title: Molecular Simulations of Adsorption of Micelles of a Model Corrosion Inhibitor on Partially or Fully Covered Iron Surfaces

description: Molecular simulations to study how corrosion inhibitor micelles adsorb at iron-water interfaces. Adsorption free energy profiles as well as molecular dynamics simulation scripts are shared.
DOI: 10.5258/soton/d2505
title: Dataset in support of the Southampton doctoral thesis 'Characterisation of Genetic Diversity within Chlamydia trachomatis in High-Risk Sexual Networks'

description: A zip file containing trimmed whole genome sequence reads, a spreadsheet indicating MLVA-ompA genotypes of DNA extracts obtained for the genotyping survey, and example nucleotide sequence traces.
DOI: 10.6084/m9.figshare.21907809
title: Supplementary Material for: Ste20-Like Kinase TAOK1 Positively Regulates Antiviral Responses by Controlling the TBK1-IRF3 Signaling Axis

description: The cytosolic viral nucleic acid-sensing pathways converge on the protein kinase TANK-binding kinase 1 (TBK1) and the transcription factor interferon (IFN)-regulatory factor 3 (IRF3) to induce type I IFN production and antiviral immune responses. However, the mechanism that triggers the binding of TBK1 and IRF3 after virus infection remains not fully understood. Here, we identified that thousand and one kinase 1 (TAOK1), a Ste20-like kinase, positively regulated virus-induced antiviral immune responses by controlling the TBK1-IRF3 signaling axis. Virus invasion downregulated the expression of TAOK1. TAOK1 deficiency resulted in decreased nucleic acid-mediated type I IFN production and increased susceptibility to virus infection. TAOK1 was constitutively associated with TBK1 independently of the mitochondrial antiviral signaling protein MAVS. TAOK1 promoted IRF3 activation by enhancing TBK1-IRF3 complex formation. TAOK1 enhanced virus-induced type I IFN production in a kinase activity-dependent manner. Viral infection induced TAOK1 to bind with dynein instead of microtubule-associated protein 4 (MAP4), leading to the trafficking of TBK1 to the perinuclear region to bind IRF3. Thus, the depolymerization of microtubule impaired virus-mediated IRF3 activation. Our results revealed that TAOK1 functioned as a new interaction partner and regulated antiviral signaling via trafficking TBK1 along microtubules to bind IRF3. These findings provided novel insights into the function of TAOK1 in the antiviral innate immune response and its related clinical significance.
DOI: 10.6084/m9.figshare.21907809.v1
title: Supplementary Material for: Ste20-Like Kinase TAOK1 Positively Regulates Antiviral Responses by Controlling the TBK1-IRF3 Signaling Axis

description: The cytosolic viral nucleic acid-sensing pathways converge on the protein kinase TANK-binding kinase 1 (TBK1) and the transcription factor interferon (IFN)-regulatory factor 3 (IRF3) to induce type I IFN production and antiviral immune responses. However, the mechanism that triggers the binding of TBK1 and IRF3 after virus infection remains not fully understood. Here, we identified that thousand and one kinase 1 (TAOK1), a Ste20-like kinase, positively regulated virus-induced antiviral immune responses by controlling the TBK1-IRF3 signaling axis. Virus invasion downregulated the expression of TAOK1. TAOK1 deficiency resulted in decreased nucleic acid-mediated type I IFN production and increased susceptibility to virus infection. TAOK1 was constitutively associated with TBK1 independently of the mitochondrial antiviral signaling protein MAVS. TAOK1 promoted IRF3 activation by enhancing TBK1-IRF3 complex formation. TAOK1 enhanced virus-induced type I IFN production in a kinase activity-dependent manner. Viral infection induced TAOK1 to bind with dynein instead of microtubule-associated protein 4 (MAP4), leading to the trafficking of TBK1 to the perinuclear region to bind IRF3. Thus, the depolymerization of microtubule impaired virus-mediated IRF3 activation. Our results revealed that TAOK1 functioned as a new interaction partner and regulated antiviral signaling via trafficking TBK1 along microtubules to bind IRF3. These findings provided novel insights into the function of TAOK1 in the antiviral innate immune response and its related clinical significance.
DOI: 10.21942/uva.21908190
title: Data

description: This folder contains all the decoding data/results that are used to reproduce the figures and analyses reported in the paper. Use the "all_figures_PLOSBIO23.m script" to do so.
DOI: 10.21942/uva.21908190.v1
title: Data

description: This folder contains all the decoding data/results that are used to reproduce the figures and analyses reported in the paper. Use the "all_figures_PLOSBIO23.m script" to do so.