cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18128/d100.v1.0
title: IPUMS Higher Ed

description: IPUMS Higher Ed integrates the data from the Scientists and Engineers Statistical Data System (SESTAT), a database developed by the National Science Foundation. The database provides demographic, educational, employment, and earnings data about scientists and engineers in the United States. The data are derived from three survey: the National Survey of College Graduates, the Survey of Doctorate Recipients, and the National Survey of Recent College Graduates. The three surveys are fielded at the same time, questions common among the surveys have the same reference period, and have a similar target population (non-institutionalized individuals under the age of 76 with a bachelor's degree or higher). IPUMS Higher Ed is not a collection of compiled statistics; it is individual-level microdata and researchers must use a statistical package to analyze the millions of records in the database. IPUMS Higher Ed is available through an online data access system free of charge to registered users at highered.ipums.org.
DOI: 10.20350/digitalcsic/8549
title: Multichannel seismic reflection and wide-angle and refraction data acquisition along the Iberia Atlantic Margins

description: The data acquisition contract was awarded to GECO-PRAKLA and took place in August-September 1993 aboard M/V Geco Sigma. Seismic data was successfully collected along the Cantabrian Margin, Galicia Margin, Iberian Abyssal Plain, the continental platform of Western Iberia, Tagus Abyssal Plain, the Gorringe Bank and Gulf of Cadiz. Data for the 240 km long line IAM-12 was acquired in February 1993 by SEISQUEST vessel of GECO-PRAKLA. The total amount of seismic reflection data collected was 3808.175 km in 19 track lines offshore. Technical specifications of the profiles: Streamer length 4800 m, Number of channels 192, Group interval 25 m, Shotpoint interval 75 m (100 m and 150 m on line IAM-2W), Source 7424 in3 (Record length 25 seconds), Sample rate 4 ms. Contact person: Torne, M., mtorne@ictja.csic.es.
description: The Iberian Atlantic Margins (IAM) project is a multinational research programme, coordinated by the Institute of Earth Sciences of Barcelona, CSIC (Spain). It involves different academic institutions of Britain (University of Oxford and University of Durham), France (IFREMER), Portugal (University of Lisbon and Institute of Meteorology of Lisbon) and Spain (Institute of Earth Sciences of Barcelona, CSIC) and more than 40 associated scientists of European institutions attached to the main contractors. The project, financed by the European Community within its JOULE-Programme (Contract# JOU2-CT92-0177), aims to explore the deep continental and oceanic Atlantic margins of Iberia for a better understanding of the formation and evolution of Atlantic type margins, outstanding structural features and potential location of hydrocarbons and other natural resources. The project was designed to acquire deep seismic multichannel data and onshore recording of wide angle and refraction data along the North Iberian margin; the West Iberia margin, including the Galicia margin, the Iberia and Tagus abyssal plain, and the continental shelf off Portugal; and the Gorringe Bank region and Gulf of Cadiz. The experimental part of the study consisted of the acquisition of over 3700 km of near vertical incidence deep seismic multichannel reflection data. This together with wide angle reflection and refraction data recorded by land stations and OBS (Ocean Bottom Seismometers) has resulted in a full coverage in terms of crustal structure and velocity information of the study region.
DOI: 10.20350/digitalcsic/8633
title: SIT4ME: Innovative seismic imaging techniques for mining exploration - Sotiel-Elvira (Spain) dataset

description: The acquired data comprises 2D/3D and 3C components. The acquisition employed 647 seismic receivers, distributed in a 3D mesh around the target and along six 2D crooked lines sampling the study area. The source employed was a 32 t vibroseis truck, operating at c. 900 points in the pathways along the 2D profiles. Each vibration point was used three times, with frequency sweeps of 10-100 Hz.
description: Fair and sustainable production of raw materials is one of the main challenges faced by our society. Through its RawMaterials Programme, the European Institute of Technology (EIT) encourages research and innovation solutions for mineral exploration to make them safer, sustainable and cost-effective. The SIT4ME project, funded by EIT, addresses these objectives by undertaking seismic mineral exploration methods in crystalline tectonic settings, at a reduced cost. The SIT4Me project will analyse the efficiency of passive seismic methods (i.e. ambient noise interferometry) for subsurface imaging, by comparing active- and passive-source datasets in mining areas. The files in this dataset correspond to the controlled-source acquisition.
DOI: 10.5066/f71z43h2
title: West Indian Manatee (Trichechus manatus) mWIMAx_CONUS_2001v1 Range Map

description: This dataset represents a species known range extent for Trichechus manatus (West Indian Manatee). These range maps are created by attributing sub-watershed polygons with information of a species presence, origin, seasonal and reproductive use.
DOI: 10.5281/zenodo.6576177
title: NAPKON Public Use File

description: Anonymized Public Use File of the National Pandemic Cohort Network (NAPKON), a German cohort studying the epidemiology and clinical course of SARS-CoV-2 infected patients. For more information see https://napkon.de/
DOI: 10.5281/zenodo.6626335
title: Model output supporting MimiBRICK v1.1.0

description: Model calibration output and model simulation output supporting the model calibration and analysis codes included in MimiBRICK v1.1.0. v1.1.0 edit: file naming simplified
DOI: 10.5281/zenodo.7389633
title: Murine Bone Marrow Derived Macrophages (BMDM's) stimulated with LPS and treated with PBS, Epirubicin and Aclarubicin

description: This dataset was used in the analysis which composes the GitHub repository: https://github.com/andrebolerbarros/Chora_etal_2022 The files presented here correspond to: <em>gene_counts.tab:</em> the table for the gene counts produced by the alignment of fastq files using STAR; <em>sampleTable.csv:</em> the treatment information for each sample produced.
DOI: 10.6084/m9.figshare.15060780.v3
title: Quantifying Uncertainties in CERES/MODIS Downwelling Radiation Fluxes in the Global Tropical Oceans

description: Here we provide QL and QS data from CMv3 and CMv4 (satellite data) and observations from GTMBA in the global tropical oceans used in the present study. The data formats are NetCDF and Excel. Except for figure 19 and supplementary figure 6, units of data are W/sq.m. Units of data for figure 19 and supplementary figure 6 are degree C and mts, respectively.
DOI: 10.6084/m9.figshare.20371677
title: Bleaching Corallivory Dataset

description: This dataset accompanies the manuscript " Shifts in predator behavior following climate induced disturbance on coral reefs" by Rotjan & Ray et al.
DOI: 10.6084/m9.figshare.21129775
title: Supplementary Material for: Clinical Features of Patients with Alzheimer’s Disease and a History of Traumatic Brain Injury

description: <b><i>Introduction:</i></b> Traumatic brain injury (TBI) has been associated with a greater risk of developing Alzheimer’s disease (AD). Less is known about the clinical features of AD patients with TBI history. The objective of this study was to examine whether a history of TBI and specific injury characteristics are associated with differences in age of disease onset, cognitive features, and neuropsychiatric symptoms (NPSs) in AD patients. <b><i>Methods:</i></b> Biomarker-proven AD patients (CSF or amyloid PET) were selected from the Amsterdam Dementia Cohort. TBI events were classified by age at injury (TBI &lt;25 or ≥25 years) and TBI severity (loss of consciousness, multiple events). Cognitive composite scores were calculated from results of a neuropsychological test battery. NPSs were assessed with the Neuropsychiatric Inventory Questionnaire (NPI-Q). Linear regression analyses were utilized to examine associations between TBI, TBI characteristics, and clinical outcome measures. <b><i>Results:</i></b> Among the 1,755 selected AD patients (mean age = 65.2 years), 166 (9.5%) had documented ≥1 TBI in their medical history. Overall, TBI history was not related to differences in age of disease onset, but age at injury &lt;25 years old was associated with 2.3 years earlier age at symptom onset (<i>B</i> = −2.34, <i>p</i> = 0.031). No significant associations were found between TBI history or TBI characteristics and differences in cognition or NPSs. <b><i>Conclusion:</i></b> Our results underscore previous findings on the vulnerability of the brain during critical maturation phases and suggest that an early TBI may contribute to lower resilience to neurodegenerative changes.
DOI: 10.6084/m9.figshare.21558288
title: Supplementary Material for: What Went Wrong with VEGF-A in Peripheral Arterial Disease? A Systematic Review and Biological Insights on Future Therapeutics

description: <b><i>Background:</i></b> Of the 200 million patients worldwide affected by peripheral arterial disease (PAD), 4% will inevitably require major limb amputation. Previous systematic reviews presented a conflicting body of evidence in terms of vascular endothelial growth factor (VEGF) family member effects upon PAD natural progression. Despite that, modulation of intrinsic angiogenesis mechanisms targeting the VEGF family members still confers an attractive therapeutic target. The aim of the present study was to evaluate current evidence of VEGF modulation in the context of PAD. <b><i>Methods:</i></b> This is a systematic literature review conducted according to the PRISMA guidelines and registered under PROSPERO database [CRD42021285988]. Independent literature search was performed up to April 1, 2022, on six databases. A total of 22 eligible studies were identified [N: 3, interventional patient studies; N: 19, animal studies]. Animal studies were appraised by the SYRCLE risk of bias tool, while human participant studies were assessed by the Newcastle Ottawa scale. Overall, quality of evidence was deemed fair for both animal and human studies. Main study outcomes were percentage change of injured vessel lumen stenosis and neointimal area formation upon VEGF modulation (inhibition or activation) in comparison with control group. <b><i>Findings:</i></b> Nineteen animal models and three human participant studies were included in the systematic review and assessed separately. Positive modulation of VEGF-A in animal models resulted in a median decrease of 65.58% [95% CI 45.2; 71.87] in lumen stenosis [14 studies]. Furthermore, positive modulation of VEGF-A was found to reduce neointimal area proliferation by a median decrease of 63.41% [95% CI 41.6; 79.59] [14 studies]. Median end of study duration was 28 days [range: 14–84 days]. Data were insufficient to assess these outcomes with respect to VEGF-B or VEGF-C modulation. The limited number of available human studies presented inadequate outcome assessment despite their overall fair NOS grading. <b><i>Interpretation:</i></b> VEGF-A-positive modulation decreases lumen stenosis and neointimal hyperplasia in PAD simulation animal models. Previously identified variability among outcomes was found to strongly stem from the variability of experimental designs. Clinical applicability and safety profile of VEGF-A in the context of PAD remain to be defined by a robust and uniformly designed body of further animal model-based experiments.
DOI: 10.6084/m9.figshare.21763109
title: Supplementary Material for: Proteinuria and Risk for Heart Failure in 55,191 Patients Having History of Cancer

description: <b><i>Introduction:</i></b> We examined the association of proteinuria with the risk for heart failure (HF) and other cardiovascular disease (CVD) events in patients with prior history of breast, colorectal, or stomach cancer using a nationwide population-based database. <b><i>Methods:</i></b> We conducted this retrospective observation study using the JMDC Claims Database and analyzed 55,191 patients with prior history of breast, colorectal, or stomach cancer. The median age was 54 (48–60) years, and 20,665 participants (37.4%) were men. Using urine dipstick data at baseline, 3,945 and 1,521 participants were categorized as having trace and positive proteinuria, respectively. Using Cox proportional hazards models, we examined the relationship of proteinuria with the incidence of HF and other CVD events. <b><i>Results:</i></b> Over a mean follow-up of 2.8 ± 2.2 years, 1,597 HF, 124 myocardial infarction, 1,342 angina pectoris, 719 stroke, and 361 atrial fibrillation events were recorded. Kaplan-Meier curves showed that the cumulative incidence for HF increased with proteinuria category (log-rank <i>p</i> &lt; 0.001). After multivariable adjustment, hazard ratios of trace and positive proteinuria for HF were 1.24 (95% CI, 1.04–1.47) and 1.62 (95% CI, 1.30–2.02), respectively. The presence of proteinuria was also associated with a higher risk for angina pectoris and atrial fibrillation. <b><i>Discussion:</i></b> Proteinuria was associated with a greater risk of developing HF and other CVD events in patients with prior history of cancer. The optimal management strategy for patients with proteinuria and cancer needs to be established for the prevention of HF in cancer patients.
DOI: 10.6084/m9.figshare.21763160
title: Supplementary Material for: Neonatal Intensive Care Quality Level-Dependent Variations in the Survival Rate of Infants with a Birth Weight of 500 g or Less in Korea: A Nationwide Cohort Study

description: <b><i>Objective:</i></b> Recent evidence suggests that the survival of peri-viable infants with birth weight (BW) ≤500 g could be improved with better care practices in the neonatal intensive care unit (NICU). This study aimed to investigate the care quality level of NICU-dependent variations in the survival rate of infants with BW ≤500 g. <b><i>Methods:</i></b> To determine the quality of NICU care-dependent variations in the survival rate, 226 eligible infants of BW ≤500 g and ≥22 weeks gestation registered in the Korean Neonatal Network between 2013 and 2017 were grouped according to the survival rates of infants at 23–24 weeks gestation, reflecting the care quality level of each NICU as group I (≥50%, <i>n</i> = 107) and group II (&lt;50%, <i>n</i> = 119). <b><i>Results:</i></b> The survival rate of group I infants (40.2%, 43/107) was significantly higher than that of group II infants (14.3%, 17/119). Significantly reduced deaths from birth to the age of 7 days due to cardiorespiratory causes were the primary contributors to improved survival. In multivariable Cox hazard model analyses, besides the gestational age and BW, antenatal steroid use, cesarean section, pH, and base excess at admission were associated with improved infant survival. <b><i>Conclusions:</i></b> The survival rate of pre-viable infants with BW ≤500 g could be improved by providing better NICU quality care practices, including better cardiorespiratory management starting from delivery room resuscitation.
DOI: 10.6084/m9.figshare.21763301
title: Supplementary Material for: Feasibility of Modified Endobronchial Ultrasound-Guided Intranodal Forceps Biopsy: A Retrospective Analysis

description: <b><i>Background:</i></b> Endobronchial ultrasound (EBUS)-guided intranodal forceps biopsy (IFB), a diagnostic bronchoscopic technique for intrathoracic lymphadenopathy, is performed following EBUS-guided transbronchial needle aspiration (TBNA). The current EBUS-IFB technique is complex and provides small sample volumes. We modified this technique to allow the use of standard-sized forceps. <b><i>Objectives:</i></b> The aim of this study was to assess the feasibility of the modified EBUS-IFB technique, which combines standard-sized forceps with standard EBUS-TBNA equipment. <b><i>Method:</i></b> This retrospective analysis included consecutive patients scheduled for EBUS-TBNA with attempted additional IFB between July 2020 and March 2021. The feasibility indices of IFB, technical success rate, diagnostic accuracy, and major complications were retrospectively investigated. We performed semi-quantitative evaluation of the histological specimens and univariable analyses to identify factors associated with IFB failure. <b><i>Results:</i></b> During the study period, 295 patients underwent 307 EBUS-TBNAs; 195 cases were included in the analyses. Target lesions were mainly mediastinal lymph nodes (134 cases, 68.7%); the most frequent sites were #7 (61 cases) and #4R (50 cases). The median lesion size was 16.1 mm, the technical IFB success rate was 90.8%, and the diagnostic accuracy of the TBNA and IFB combination was 99.5%. One patient was lost to follow-up. Univariable analyses did not identify any factors involved in technical IFB failure. Major complications of pneumonia and pneumothorax occurred in 2 cases (1.0%). The median histological score was significantly higher in the IFB group than in the TBNA group (1.67 vs. 1.50, <i>p</i> = 0.032). <b><i>Conclusions:</i></b> Modified EBUS-IFB, combining standard-sized forceps with common EBUS-TBNA equipment, is feasible with few major complications.
DOI: 10.6084/m9.figshare.21763334
title: Supplementary Material for: Eosinophilic Colitis, an Uncommon Cause of Diarrhea: Case Report and Literature Review

description: Eosinophilic colitis and hypereosinophilic syndrome with colic involvement are rare diagnosis that are characterized by wide-ranging gastrointestinal symptoms and idiopathic infiltration of eosinophils in the colon. The diagnostic workup is challenging since there are no standardized criteria. We report a case of a man admitted to the hospital with a history of nonbloody chronic diarrhea. The detailed workup demonstrated blood eosinophilia, and the colonic biopsies revealed extensive eosinophilic infiltration. He was treated with steroids with clinical and analytical improvement. Due to relapsing colitis after therapy withdrawal, he was chronically medicated with 10 mg of prednisolone with ultimate symptom control. This case report describes the diagnostic workup and highlights the most important features of this often underdiagnosed entity.
DOI: 10.13145/bacdive6789.20220920.7
title: Legionella tunisiensis Campocasso et al. 2012

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6789.20221219.7.1
title: Legionella tunisiensis Campocasso et al. 2012

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.34820/fk2/enx3ny
title: Optimizing Active and Passive Stocks Portfolio Formed Tobin’s Q and Price Earning Ratio Model Stocks on Kompas Index-100 Period 2012-2017

description: Abstract: Many newcomers investor in Indonesia Stock Exchange (IDX) are not knowing how to choose a good stock / bluechip in details. Meanwhile, IDX is campaigning Yuk Tabung Saham and opening many investment galleries in various Indonesian Universities. The purpose of this research is to determine the simulation results of portfolio formation with PER valuation and Tobin’s q model in Kompas Index-100 period 2012-2017. Form of the portfolio will be divided into 6 categories - ie. high PER, medium PER, low PER, High Tobin’s q, medium Tobin’s q, and low Tobin’s q - and using 45 samples in each period, which means in each category will consist of 15 shares. This research also use an active annual strategy, an active mid-year strategy, and a 5-year passive strategy, then conduct performance test using sharpe, treynor, and jensen methods. The result of this research is the consistent value ratio of medium Tobin’s q with relatively low risk and the return rate of the portfolio is above the IDX Composite (ICI) market. The performance test in each portfolio formed by the PER valuation and Tobin’s q model measured using the sharpe, treynor, and jensen methods shows that the active mid-year strategy has the best performance coupled with annual passive strategy, and lastly 5-year passive strategy.
DOI: 10.5066/f7xs5snv
title: Data for estimating monthly water budgets at Panola Mountain Research Watershed, Stockbridge, Ga., water years 19862015

description: Data used to estimate monthly water budgets at Panola Mountain Research Watershed, Panola Mountain State Park, Stockbridge, Ga. for water years 1986-2015. Data include: (1) hourly air temperature and solar radiation data used to calculate potential evapotranspiration using the Priestly-Taylor equation; (2) unit-value streamwater stage and streamflow; (3) unit-value base flow determined from a hydrography separation using the Eckhardt filter, (4) daily water budgets components, and; (5) edit code descriptions for streamwater stage and precipitation data for items 2 and 4.
DOI: 10.5281/zenodo.7434870
title: Data for accurate cell type deconvolution in spatial transcriptomics using a batch effect-free strategy

description: Simulated and experimental data used in the ReSort manuscript. It is necessary and sufficient to reproduce the results in the paper.
DOI: 10.6084/m9.figshare.21750584
title: Supplementary Material for: Allergic Polysensitization Clusters: Newly Recognized Severity Marker in Urban Asthmatic Adults

description: <b><i>Introduction:</i></b> While reliable, quantitative in vitro testing for sensitivity to aeroallergens has been available for decades, such information has largely been ignored in clustering analyses of asthma. Our aim is to explore allergic polysensitization as a possible marker of asthma severity and, as such, to be considered as an integral marker in future asthma clustering analyses. <b><i>Methods:</i></b> We constructed a database of sensitizations to the 25 aeroallergens in our geographic area (zone 1, Northeastern US) using the ImmunoCAP® in vitro assay. We used the Scikit-Learn® machine learning library for model-based clustering to identify allergic polysensitization clusters. Clusters were compared for differences in common office-based clinical markers of asthma. <b><i>Results:</i></b> The database consisted of 509 patients. Unbiased machine learning identified ten clusters of increasing allergic polysensitization of varying sizes (<i>n</i> = 1–339) characterized by significant increases in mean serum immunoglobulin E (<i>p</i> &lt; 0.001), peripheral blood eosinophil count (<i>p</i> &lt; 0.001), and D<sub>LCO</sub> (<i>p</i> = 0.02). There was a significant decline in mean age at presentation (<i>p</i> &lt; 0.001), FEV<sub>1</sub>/FVC (<i>p</i> = 0.01), and FEF<sub>25-75</sub> (<i>p</i> = 0.002) with increasing allergic polysensitization. Finally, we identified two divergent paths for the poly-atopic march, one driven by perennial and the other by seasonal allergens. <b><i>Conclusion:</i></b> This pilot study showed that allergic polysensitization, using readily available qualitative and quantitative in vitro sensitization data, largely ignored in cluster analyses to date, may add further clinical precision in cluster analyses of asthma. We suggest the methods used here can be applied and tested using larger databases and aeroallergens present in diverse geographic regions.
DOI: 10.13145/bacdive6790.20220920.7
title: Legionella micdadei Hébert et al. 1980

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6790.20221219.7.1
title: Legionella micdadei Hébert et al. 1980

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6791.20220920.7
title: Legionella micdadei Hébert et al. 1980

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.