cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/24rjsypp2n.1
title: Fifa 11+ Kids on knee torque and the performance

description: Data corresponds to the study titled "Effect of Fifa 11+ Kids on knee flexor and extensor torque and the performance on the agility T-test – A randomized, controlled, clinical trial". It was hypothesized that the FIFA 11 Kids training (FT) may promote an increase in muscle strength, facilitate greater balance in the knee agonist/antagonist ratio, and improve functional performance. Post-intervention knee extensor torque was significantly greater in the dominant (P&lt;0.001) and non-dominant (P&lt;0.001) limbs than baseline FT values. Post-intervention knee extensor torque values for the dominant (P=0.03) and non-dominant (P=0.02) limbs were significantly greater for the FT group than control group. Post-intervention knee flexor torque values were significantly greater in the dominant (P=0.003) and non-dominant (P=0.001) limbs than baseline FT values. Post-intervention knee flexor torque values for the non-dominant limb (P=0.007) were significantly greater for the FT group than control group. Post-intervention knee flexor time to peak torque was significantly lower in the dominant limb (P=0.05) than baseline FT values. FIFA 11+ Kids training increased the knee flexor and extensor torques and reduced the time to knee flexor torque. It did not improve the agonist/antagonist ratio or agility performance.
DOI: 10.17632/h484jnkhyp.1
title: Hematological changes and related influencing factors in patients with gastrointestinal cancer after intraperitoneal chemotherapy or hyperthermic intraperitoneal chemotherapy during perioperative period

description: From January 2015 to September 2019, 449 patients undergoing surgery for gastrointestinal cancer in a single tertiary hospital were retrospectively selected. The attached files uploaded contained the original data.
DOI: 10.17632/hczxgtrww4.1
title: TRPC4 deletion elicits behavioral defects in sociability by dysregulating expression of microRNA-138-2

description: The molecular changes in autism spectrum disorders (ASD) are not well understood. To investigate whether absence of transient receptor potential canonical 4 (TRPC4), which is strongly expressed in the hippocampus, affects ASD, we examined social behaviors of mice in which Trpc4 is deleted (Trpc4−/−). The Trpc4−/− mice had enhanced levels of repetitive grooming, and lowered sociability and preference for social novelty at postnatal day 56 (P56), indicative of an autism-like phenotype. In microarray analysis of hippocampus, microRNA (miR)-138-2, the precursor of miR-138, was upregulated in the Trpc4−/− mice. Absence or blockade of Trpc4 triggered Matrin3 binding to miR-138-2, thereby repressing miR-138 and raising levels of established miR-138 targets, suggesting that Trpc4 regulates signaling components opposing the development of ASD through miR-138. The autistic-like behaviors in Trpc4−/− adults were reversed by overexpressing hippocampal miR-138-2. We conclude that TRPC4 may contribute to maintain sociability through the processing of miR-138-2 for proper levels of miR-138.
DOI: 10.17632/6v78yg9p43.1
title: Contemporary Sedimentation in Lake Onego: Geochemical Features of Water, Suspended Matter, and Accumulation Rate

description: This dataset has a data about the Contemporary Sedimentation in Lake Onego: Geochemical Features of Water, Suspended Matter, and Accumulation Rate.
DOI: 10.17632/btbhg3z8xc.1
title: Places of the dead and the living

description: The datasets in the form of 4 Excel sheets containing the code information used for marking the gravestone photographs taken during the research at both research locations (Trinec and Litvinov). In total, there are almost 10 thousand coded items. The datasets are 4 for the reason that they were coded by four coders. The file also includes a codelist.
DOI: 10.17632/g4tbw5kfh9.1
title: Electrically Evoked In Vitro (Rat) Retinal Neural Responses Using Large (500 um) Stimulating Electrodes (ARCHIVE 1/2)

description: For details please see the published study. This is a partial data set, the remaining data is at DOI: 10.17632/73972s5dpx.1

The data is for the 4 Evans rats and 1 RCS rat in the published study. Each data file is for a single run of stimulation pulses lasting many seconds. The sample rate and voltage units can be seen in the Matlab scripts used to open the data. 

These MATLAB scripts are those used to open and display the data used in the study. 

Animal 1: make_data_march22nd.m
Animal 2: make_data_may3rd.m
Animal 3: make_data_may10th.m
Animal 4: make_data_may17th.m

Animal 5 (RCS): make_data_may24th.m
DOI: 10.17632/2474843g7x.4
title: Potassium isotope compositions of Mariana arc lavas and their sedimentary input - Data

description: Data file for "Potassium isotope compositions of Mariana arc lavas and its sedimentary input. Included are data for main text tables 1 and 2, and supplementary tables S1 to S7. Also included are major element, trace element, and radiogenic isotope data for Mariana arc lavas and sedimentary input.
DOI: 10.17632/dtt8b8s538.1
title: Effect of Clonal integration of Loropetalum chinense on its rhizosphere soil nutrient status in karst ecosystems

description: Our study hypothesizes that: 1) under the same succession stage, there are significant differences in the carbon, nitrogen, phosphorus, and potassium content and ecological stoichiometry characteristics among the rhizosphere soil of the mother plant, the rhizosphere soil of the clones, the rhizosphere soil of the non-cloned plants, and the non-rhizosphere soil of L. chinense. 2) as growth succession progresses, the carbon, nitrogen, and potassium contents in the rhizosphere soil of the mother plant, the rhizosphere soil of the ramets, the rhizosphere soil of the non-cloned plants, and the non-rhizosphere soil of the L. chinense will gradually decrease, while the phosphorus content will gradually increase. Our secondary goal is to explore the relationship between soil nutrients and their stoichiometric characteristics to identify the key driving factors for these interactions. The results our research will enhance our understanding of the impact of clone integration of L. chinense on rhizosphere soil nutrients in karst areas. Our data is obtained through field sampling and laboratory testing of soil indicators. My data shows the changes in pH, moisture content, organic carbon, total nitrogen, available nitrogen, total phosphorus, available potassium, and available potassium content of maternal plant rhizosphere soil, ramet rhizosphere soil, unclonable plant rhizosphere soil, and non rhizosphere soil at different succession stages under the effect of clone integration, as well as the ecological stoichiometry of these soil nutrients. It is worth noting that：our first key finding was that rhizosphere soil of non-cloned plants consistently exhibited higher levels of soil organic carbon (SOC), total nitrogen (TN), available nitrogen (AN), available phosphorus (AP), and a higher C/P ratio compared to the rhizosphere soil of mother and ramet plants involved in clonal integration. In contrast, the non-rhizosphere soil had the lowest levels of carbon, nitrogen, and phosphorus, suggesting that clonal integration lowers the concentrations of these nutrients in the rhizosphere soil of cloned plants. Secondly, our analysis revealed that soil TP, TK, and C/N values were highest in the rhizosphere soil of the mother plants throughout the early, middle, and late stages of succession. This indicates that clone integration improves the limitations of P and K content in soil in karst areas. Finally, the ecological stoichiometry of nutrients in the rhizosphere soil of mother plants, ramets, non-cloned plants, and non-rhizosphere soil exhibits significant interactions with soil C, N, P, K, pH, and SWC across the early, middle, and late stage of succession. These findings provide scientific basis for the adaptive regulation of the rhizosphere soil environment on clonal integration during the succession process of L. chinense. Beneficial for promoting research on vegetation restoration in karst areas.
DOI: 10.17632/6r36skj6s6.1
title: Single cell RNA seq: AD#1/NDC#1, Day 60

description: Deposited files represent data from the article Vanova et al., 2023: Cerebral organoids derived from patients with Alzheimer’s disease with PSEN1/2 mutations have defective tissue patterning and altered development. Published in Cell Reports. 

This publication describes modeling Alzheimer's disease in the dish using patients-derived human induced pluripotent stem cells (iPSCs). iPSCs were used to generate 3D cerebral organoids, grown for 60 days and analyzed using scRNA-seq. Data from Non-demented control organoids (final_D1_sub), AD organoids (final_D2_sub) organoids are visualized in the manuscript in Figure 4 and S4. Data from integrated analysis of both non-demented control and AD organoids (final_D1D2_int) are visualized in the manuscript in Figure 5 and S5.

Here, we deposit files for interactive visualization with PAGODA. PAGODA can be accessed using the following link: http://pklab.med.harvard.edu/nikolas/pagoda2/frontend/current/pagodaLocal/index.html
DOI: 10.17632/wtvkgjgyhs.1
title: Data and code to Ageing and environment affect female more than male color in a mutually ornamented bird

description: Data and code to replicate the analyses in the paper "Ageing and environment affect female more than male color in a mutually ornamented bird". Gomes et al. (2024, Behavioral Ecology).

This is composed by one R script file with code to replicate all analyses present in the published paper, and three datasets with individuals data needed to run analyses.

Specifically, it contains:
- 'R script for analyses.R': the complete R scripts needed to replicate all statistical analyses present in the paper. This script contains code to import all data, so no further action, besides running this script, is needed to replicate analyses.
- 'colour_data.txt': dataset containing all individuals information and colour measurements across time points for birds captured from the wild in the mesocosm. This dataframe contains the bird ID, sex, their year of capture, and year of death.
- 'colour_cages_data_breast.txt': dataset containing all individuals information and breast colour measurements across time points for birds maintained in cages. This dataframe contains the bird ID, sex, and the date each measurement was taken.
- 'colour_cages_data_bill.txt': dataset containing all individuals information and bill colour measurements across time points for birds maintained in cages. This dataframe contains the bird ID, sex, and the date each measurement was taken.

Article reference:
"Ageing and environment affect female more than male color in a mutually ornamented bird", Behavioral Ecology, 2024.
 Ana Cristina R. Gomes, CIBIO/InBIO, Universidade do Porto, Vairão, Portugal; Department of zoology, Stockholm University, Sweden;
 Soraia Guerra, CIBIO/InBIO, Universidade do Porto, Vairão, Portugal; 
 Cristina Romero-Diaz, CIBIO/InBIO, Universidade do Porto, Vairão, Portugal; Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universidad de Valencia, Spain;
 Paulo A. Silva, CIBIO/InBIO, Universidade do Porto, Vairão, Portugal; 
 Sandra Trigo, CIBIO/InBIO, Universidade do Porto, Vairão, Portugal; 
 Gonçalo C. Cardoso, CIBIO/InBIO, Universidade do Porto, Vairão, Portugal.

November 2024, Ana Cristina R. Gomes (ana.gomes@zoologi.su.se).
DOI: 10.17632/t7tr42ztt5.2
title: Geels Murat et al STAR Protocols 2024

description: This dataset is an example to reproduce the analysis procedure described in Geels Murat et al, STAR Protocols 2024. It contains the original and the processed Imaris file for a representative F-IVM movie (internal reference: 220223 d13 D4M-N4 F3-S6f MPIVM-1_bf_M5 24h ITC XYZT3), the exported statistics Excel file, the tab-delimited file for Matlab, and the output "Analysis", "Summary" and "MSD" files. The original Matlab scripts can be found at DOI https://doi.org/10.5281/zenodo.11122613.
DOI: 10.17632/tkwcn6s2t3.1
title: Data from: Horneros consider their neighbors as precious foes regardless of territory size and human disturbance

description: Data and R codes corresponding to the article:
Amorim PS, Guaraldo AC, Diniz P. 2023. Horneros consider their neighbors as precious foes regardless of territory size and human disturbance. Behavioural Processes. https://doi.org/10.1016/j.beproc.2023.104942

The data encompass territorial responses of rufous horneros (Furnarius rufus) to playback recordings of strangers' duets, spontaneous duets from neighboring individuals, and playback of control solo songs from great kiskadees (Pitangus sulphuratus).
DOI: 10.17632/g56cvgw9m3.1
title: Replication code for "Monetary policy rules and the inequality-augmented Phillips curve"

description: The current code replicates the results in “Monetary policy rules and the inequality-augmented Phillips curve” by Lilian Rolim, Laura Carvalho, and Dany Lang, submitted to Economic Modelling. It includes the ABM simulation model coded by Lilian Rolim as well as the R files required to analyze the data and generate the figures reported in the article. The README file provides instructions for generating the simulation results and running the R scripts in a Linux environment.

The model was first developed by Rolim (2022) during the Ph.D. at the Universidade Estadual de Campinas (UNICAMP) under the supervision of Carolina Troncoso Baltar and Gilberto Tadeu Lima. It is a macroeconomic agent-based model designed for analyzing the relationship between macroeconomics and inequality.

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References:
Rolim, L. N. (2022) Income inequality, economic activity, and economic policy in an agent-based macroeconomic model (Doctoral dissertation, Universidade Estadual de Campinas (UNICAMP). Instituto de Economia).
DOI: 10.17632/8ybs3z7dmt.1
title: Rao_Supplemental_Tables_JCEM

description: Supplemental Tables for Association of Polycystic Ovary Syndrome and Metabolic Syndrome, modification by inflammation and menopause in HCHS/SOL manuscript submitted to the Journal of Clinical Endocrinology and Metabolism
DOI: 10.17632/nvc3rsf53b.4
title: MadureseSet: Madurese-Indonesian Dataset

description: MadureseSet is a digitized version of the physical document of Kamus Lengkap Bahasa MaduraIndonesia (The Complete Dictionary of Madurese-Indonesian). It stores the list of lemmata in Madurese, i.e., 17809 basic lemmata and 53722 substitution lemmata, and their translation in Indonesian. The details of each lemma may include its pronunciation, part of speech, synonym and homonym relations, speech level, dialect, and loanword. The framework of dataset creation consists of three stages. First, the data extraction stage processes the physical document results to produce corrected data in a text file. Second, the data structural review stage processes the text file in terms of the paragraph, homonym, synonym, linguistic, poem, short poem, proverb, and metaphor structures to create the data structure that best represents the information in the dictionary. Finally, the database construction stage builds the physical data model and populates the MadureseSet database data. MadureseSet is validated by a Madurese language expert who is also the author of the physical document source of this dataset. Thus, this dataset can be a primary source for Natural Language Processing (NLP) research, especially for the Madurese language.
DOI: 10.17632/cw6n8mmywt.1
title: Source Data for North et. al. The LC3-interacting region of NBR1 is a protein interaction hub enabling optimal flux

description: This is source data for a soon to be published work.
DOI: 10.17632/4hmvnj323g.1
title: Supplementary Material for: Mutations of the CHEK2 gene in patients with cancer and their presence in the Latin American population

description: The complete list of mutations in CHEK2 reported in the cBioPortal before applying filters (Dataset 1).
The complete list of mutations in CHEK2 reported in ICGC, before applying filters (Dataset 2).
132 mutations for the CHEK2 gene were reported in ExAC browser in Latino population before filters (Dataset 3). 
Variants reported in CHEK2 that have been associated with cancer according to data in the GWAS catalog (Dataset 4).
Number of individuals per cancer study and ethnicity in the TCGA cohort. Only studies in which at least one mutation in CHEK2 was found were included (Dataset 5)
DOI: 10.17632/wz3d22bbhb.1
title: Single storey cross-laminated timber shear walls and connections dataset

description: The dataset contains experimental investigations on single-story CLT shear walls and their connections. Dataset #1 contains load and deformation measurements for shear wall connections tests. Dataset #2 contains load, deformation, panel uplift, and sliding in single shear walls; load, deformation, panel uplift, sliding, and panel-to-panel slips at vertical joints in coupled shear walls.
DOI: 10.17632/bjks5pzx5c.2
title: Apparent zinc absorption: a comparison between Ayrshire and Holstein lactating cows - Raw data

description: There is a lack of data about potential differences in trace mineral absorption within dairy cow breeds. The objective of this study was to evaluate if apparent zinc absorption between Ayrshire and Holstein lactating cows differs. A total of 12 multiparous cows (6 Ayrshire and 6 Holstein) were used in a replicated 3 × 3 Latin square design with periods of 35-d duration (26 d of diet adaptation followed by data collection). Daily intake and total faeces collection were performed on 7 consecutive days. Daily samples of total mixed ration, refusals, and faeces were composited by week and analysed for zinc concentration by atomic absorption spectrometry. Apparent absorption was calculated as daily dietary intake minus excretion in faeces over dietary intake. The percentage of inclusion of the mineral and vitamin supplement was 1.56% and 1.47% for Ayrshire and Holstein cows, respectively, accounting for different milk production, body weight, and dry matter intake between the 2 breeds. Dry matter intake of Ayrshire cows averaged 20.5 (SE: 0.8) kg/d and 25.8 (SE: 0.8) kg/d for Holstein cows resulting in a tendency for Holstein cows to ingest greater quantity of zinc. Zinc excretion was significantly greater for Holstein cows compared to Ayrshire cows but this was not translated into different retention or apparent absorption. Averaged apparent zinc absorption did not differ between breeds and was 21% and 16% for Ayrshire and Holstein, respectively, with a variation from -15 to 31%, regardless of the breed. In summary, averaged apparent zinc absorption was similar to the values reported in the literature. However, under the current experimental conditions, the technique using dietary intake minus faecal output to measure apparent zinc absorption led to an important variation between animals.
DOI: 10.17632/k9bkrg6c7r.2
title: Marydel Project data 2018-2019

description: Data at the Marydel site
DOI: 10.17632/96mzvs79kw.1
title: Nuclear genetic structure of the white shark (Carcharodon carcharias) from the Northeastern Pacific

description: Database of microsatellite
DOI: 10.17632/jkr4vzg85h.1
title: EBSD data and images for uniaxial compression tests

description: EBSD data for uniaxial compression tests on magnesium AZ31B. Sample 1, sample 2 and sample 3. Format is .ctf for Oxford Instruments Aztec software. Corresponding SEM images are in .tif format and are in two versions, one with data bar and one without data bar.
DOI: 10.17632/jymf63zccx.1
title: Spatter Coupons

description: This dataset contains the in-process data collected from a print of 6 spatter-contaminated coupons, printed using a Renishaw AM500Q machine. The data has been downsampled to 25kHz. The lower half of all 6 coupons was printed using spatter-contaminated powder from a large spatter-producing block printed upwind of the gas flow. This block was switched off for the upper half, so the coupons were printed with fresh powder. The dataset is intended to be used for the development of in-situ monitoring data analysis methods that are capable of identifying spatter using just the on-axis photodiode within the machine. The porosity for each of the samples was extracted by CT, and is also available.

This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 956401.
DOI: 10.17632/gtcfp42vg8.1
title: BP-ANN codes for the coverage area prediction of landslides v1.0

description: This data shows the python codes of BP-ANN model for the coverage area prediction of landslides.
DOI: 10.17632/fw7fmsghwf.1
title: Raphidocelis subcapitata Imaging Data for Manuscript: Mechanism of Nanomaterial-Induced Lipid Droplet Formation in Raphidocelis subcapitata is Mediated by Charge Properties

description: Raw and normalized data obtained from high-content fluorescence imaging of Raphidocelis subcapitata, cited in our manuscript titled "Mechanism of Nanomaterial-Induced Lipid Droplet Formation in Raphidocelis subcapitata is Mediated by Charge Properties." Data obtained by analysis with Cell Profiler and MetaXpress programs.
DOI: 10.17632/49syjnxzx2.1
title: Multi-Phase and Parallelized SPH Solver v5.1.2c

description: This data shows the codes of Multi-Phase and Parallelized SPH Solver.
DOI: 10.17632/r3jz6s56d3.1
title: Images relating to 3DP manual grinding tool

description: Images are for the publication of the manual grinding tool developed for 3D printing. .stl files are for 3D printing of the manual grinding tool.
DOI: 10.17632/wvzt8t9dw8.1
title: scRNAseq_data_PML_patients_Deffner_et_al_CellReports_Medicine

description: Progressive multifocal leukoencephalopathy (PML) has been associated with different forms of immune-compromise. The current study analyzes the chemokine signals and attracted immune cells in cerebrospinal fluid (CSF) during PML to define immune cell subpopulations relevant for the PML immune response. In addition to chemokines that indicate a general state of inflammation, like CCL5 and CXCL10, the CSF of PML patients specifically contains CCL2 and CCL4. Single-cell transcriptomics of CSF cells suggests an enrichment of distinct CD4+ and CD8+ T cells expressing chemokine receptors CCR2, CCR5 and CXCR3, in addition to ITGA4 and the genetic PML risk genes STXBP2 and LY9. This suggests that specific immune cell subpopulations migrate into the central nervous system to mitigate PML, and their absence might coincide with PML development. Monitoring them might hold clues for PML risk, and boosting their recruitment or function before therapeutic immune reconstitution might improve its risk-benefit ratio.
DOI: 10.17632/g7djd38jbf.1
title: Software (MATLAB codes) and data for the article "An exhaustive analysis of the use of image moments for second-order calibration. A comparison with multivariate curve resolution-alternating least-squares." submitted to Analytica Chimica Acta.

description: Software (MATLAB codes) and data for the article "An exhaustive analysis of the use of image moments for second-order calibration. A comparison with multivariate curve resolution-alternating least-squares." submitted to Analytica Chimica Acta. Departamento de Química Analítica, Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Suipacha 531 (2000) Rosario, Argentina, Departamento de Matemática, Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Suipacha 531 (2000) Rosario, Argentina, and Instituto de Química Rosario (CONICET-UNR), 27 de Febrero 210 Bis (2000) Rosario, Argentina