cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7491989.v1
title: Modulatory upregulation of an insulin peptide gene by different pathogens in <i>C. elegans</i>

description: When an animal is infected, its innate immune response needs to be tightly regulated across tissues and coordinated with other aspects of organismal physiology. Previous studies with <i>Caenorhabditis elegans</i> have demonstrated that insulin-like peptide genes are differentially expressed in response to different pathogens. They represent prime candidates for conveying signals between tissues upon infection. Here, we focused on one such gene, <i>ins-11</i> and its potential role in mediating cross-tissue regulation of innate immune genes. While diverse bacterial intestinal infections can trigger the up-regulation of <i>ins-11</i> in the intestine, we show that epidermal infection with the fungus <i>Drechmeria coniospora</i> triggers an upregulation of <i>ins-11</i> in the epidermis. Using the <i>Shigella</i> virulence factor OpsF, a MAP kinase inhibitor, we found that in both cases, <i>ins-11</i> expression is controlled cell autonomously by p38 MAPK, but via distinct transcription factors, STA-2/STAT in the epidermis and HLH-30/TFEB in the intestine. We established that <i>ins-11</i>, and the insulin signaling pathway more generally, are not involved in the regulation of antimicrobial peptide gene expression in the epidermis. The up-regulation of <i>ins-11</i> in the epidermis does, however, affect intestinal gene expression in a complex manner, and has a deleterious effect on longevity. These results support a model in which insulin signaling, via <i>ins-11</i>, contributes to the coordination of the organismal response to infection, influencing the allocation of resources in an infected animal.
DOI: 10.7284/107418
title: GNSS (Global Navigation Satellite System) data collected during research cruise KNOX07RR using a Furuno GP-90D instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491983.v2
title: Familiarity and Difficulty of Spanish word fragments, Dasi et al. (2004a)

description: Normative data on the familiarity and difficulty of 196 Spanish word fragments<br>reference_to_cite: "Dasi, C., Soler, M. J., Ruiz, J. (2004). Normative data on the familiarity and difficulty of 196 Spanish word fragments. Behavior Research Methods, Instruments, & Computers (2004), Vol. 36, Issue 3, 559-563. [on-line]"<br>url_information: "http://psychonomic.org/archive/"<br>url_download: "http://psychonomic.org/archive/"
DOI: 10.6084/m9.figshare.7491983.v1
title: Familiarity and Difficulty of Spanish word fragments, Dasi et al. (2004a)

description: Normative data on the familiarity and difficulty of 196 Spanish word fragments<br>reference_to_cite: "Dasi, C., Soler, M. J., Ruiz, J. (2004). Normative data on the familiarity and difficulty of 196 Spanish word fragments. Behavior Research Methods, Instruments, & Computers (2004), Vol. 36, Issue 3, 559-563. [on-line]"<br>url_information: "http://psychonomic.org/archive/"<br>url_download: "http://psychonomic.org/archive/"
DOI: 10.7284/107419
title: GNSS (Global Navigation Satellite System) data collected during research cruise KNOX07RR using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491959
title: The novel microtubule-associated CAP-glycine protein Cgp1 governs growth, differentiation, and virulence of <i>Cryptococcus neoformans</i>

description: Microtubules are involved in mechanical support, cytoplasmic organization, and several cellular processes by interacting with diverse microtubule-associated proteins such as plus-end tracking proteins, motor proteins, and tubulin-folding cofactors. A number of the cytoskeleton-associated proteins (CAPs) contain the CAP-glycine-rich (CAP-Gly) domain, which is evolutionarily conserved and generally considered to bind to α-tubulin to regulate the function of microtubules. However, there has been a dearth of research on CAP-Gly proteins in fungal pathogens, including <i>Cryptococcus neoformans</i>, which is a global cause of fatal meningoencephalitis in immunocompromised patients. In this study, we identified five CAP-Gly protein-encoding genes in <i>C. neoformans</i>. Among these, Cgp1 encoded by CNAG_06352 has a unique domain structure containing CAP-Gly, SPEC, and Spc7 domains that is not orthologous to CAPs in other eukaryotes. Supporting the role of Cgp1 in microtubule-related function, we demonstrate that deletion or overexpression of <i>CGP1</i> alters cellular susceptibility to thiabendazole, a microtubule destabilizer and that Cgp1 is co-localized with cytoplasmic microtubules. Related to the cellular function of microtubules, Cgp1 governs the maintenance of membrane stability and genotoxic stress responses. Deletion of <i>CGP1</i> also reduces production of melanin pigment and attenuates the virulence of <i>C. neoformans</i>. Furthermore, we demonstrate that Cgp1 uniquely regulates the sexual differentiation of <i>C. neoformans</i> with distinct roles in the early and late stage of mating. Domain analysis revealed that the CAP-Gly domain plays a major role in all Cgp1 functions examined. In conclusion, this novel CAP-Gly protein, Cgp1, has pleotropic roles in regulating growth, stress responses, differentiation, and virulence in <i>C. neoformans</i>.
DOI: 10.6084/m9.figshare.7491959.v1
title: The novel microtubule-associated CAP-glycine protein Cgp1 governs growth, differentiation, and virulence of <i>Cryptococcus neoformans</i>

description: Microtubules are involved in mechanical support, cytoplasmic organization, and several cellular processes by interacting with diverse microtubule-associated proteins such as plus-end tracking proteins, motor proteins, and tubulin-folding cofactors. A number of the cytoskeleton-associated proteins (CAPs) contain the CAP-glycine-rich (CAP-Gly) domain, which is evolutionarily conserved and generally considered to bind to α-tubulin to regulate the function of microtubules. However, there has been a dearth of research on CAP-Gly proteins in fungal pathogens, including <i>Cryptococcus neoformans</i>, which is a global cause of fatal meningoencephalitis in immunocompromised patients. In this study, we identified five CAP-Gly protein-encoding genes in <i>C. neoformans</i>. Among these, Cgp1 encoded by CNAG_06352 has a unique domain structure containing CAP-Gly, SPEC, and Spc7 domains that is not orthologous to CAPs in other eukaryotes. Supporting the role of Cgp1 in microtubule-related function, we demonstrate that deletion or overexpression of <i>CGP1</i> alters cellular susceptibility to thiabendazole, a microtubule destabilizer and that Cgp1 is co-localized with cytoplasmic microtubules. Related to the cellular function of microtubules, Cgp1 governs the maintenance of membrane stability and genotoxic stress responses. Deletion of <i>CGP1</i> also reduces production of melanin pigment and attenuates the virulence of <i>C. neoformans</i>. Furthermore, we demonstrate that Cgp1 uniquely regulates the sexual differentiation of <i>C. neoformans</i> with distinct roles in the early and late stage of mating. Domain analysis revealed that the CAP-Gly domain plays a major role in all Cgp1 functions examined. In conclusion, this novel CAP-Gly protein, Cgp1, has pleotropic roles in regulating growth, stress responses, differentiation, and virulence in <i>C. neoformans</i>.
DOI: 10.6084/m9.figshare.7491950
title: Pyoverdine, a siderophore from <i>Pseudomonas aeruginosa</i>, translocates into <i>C. elegans</i>, removes iron, and activates a distinct host response

description: <i>Pseudomonas aeruginosa</i>, a re-emerging, opportunistic human pathogen, encodes a variety of virulence determinants. Pyoverdine, a siderophore produced by this bacterium, is essential for pathogenesis in mammalian infections. This observation is generally attributed to its roles in acquiring iron and/or regulating other virulence factors. Here we report that pyoverdine translocates into the host, where it binds and extracts iron. Pyoverdine-mediated iron extraction damages host mitochondria, disrupting their function and triggering mitochondrial turnover via autophagy. The host detects this damage via a conserved mitochondrial surveillance pathway mediated by the ESRE network. Our findings illuminate the pathogenic mechanisms of pyoverdine and highlight the importance of this bacterial product in host-pathogen interactions.
DOI: 10.7284/107424
title: Gravimeter data collected during research cruise KNOX07RR using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491950.v1
title: Pyoverdine, a siderophore from <i>Pseudomonas aeruginosa</i>, translocates into <i>C. elegans</i>, removes iron, and activates a distinct host response

description: <i>Pseudomonas aeruginosa</i>, a re-emerging, opportunistic human pathogen, encodes a variety of virulence determinants. Pyoverdine, a siderophore produced by this bacterium, is essential for pathogenesis in mammalian infections. This observation is generally attributed to its roles in acquiring iron and/or regulating other virulence factors. Here we report that pyoverdine translocates into the host, where it binds and extracts iron. Pyoverdine-mediated iron extraction damages host mitochondria, disrupting their function and triggering mitochondrial turnover via autophagy. The host detects this damage via a conserved mitochondrial surveillance pathway mediated by the ESRE network. Our findings illuminate the pathogenic mechanisms of pyoverdine and highlight the importance of this bacterial product in host-pathogen interactions.
DOI: 10.7284/107420
title: Meteorological Station data collected during research cruise KNOX07RR using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107423
title: Multibeam Echosounder data collected during research cruise KNOX07RR using a Kongsberg EM120 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107422
title: Winch data collected during research cruise KNOX07RR using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491884
title: Imagery and Frequency, Flieller & Tournois (1994)

description: reference_to_cite: "FLIELLER, A. & TOURNOIS, J. Imagery value, subjective and objective frequency, date of entry into the language, and degree of polysemy in a sample of 998 French words. International Journal of Psychology, 1994, 29, 451-509."
DOI: 10.6084/m9.figshare.7491878
title: Brulex Corrected syl

description: Une version syllabifiée de Brulex. La syllabification a été produite par Christophe Pallier.<br>
DOI: 10.6084/m9.figshare.7491884.v1
title: Imagery and Frequency, Flieller & Tournois (1994)

description: reference_to_cite: "FLIELLER, A. & TOURNOIS, J. Imagery value, subjective and objective frequency, date of entry into the language, and degree of polysemy in a sample of 998 French words. International Journal of Psychology, 1994, 29, 451-509."
DOI: 10.6084/m9.figshare.7491878.v1
title: Brulex Corrected syl

description: Une version syllabifiée de Brulex. La syllabification a été produite par Christophe Pallier.<br>
DOI: 10.7284/107482
title: Expendable Probe data collected during research cruise KNOX09RR using a Sippican MK21 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107481
title: Meteorological Station data collected during research cruise KNOX09RR using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107485
title: Multibeam Echosounder data collected during research cruise KNOX09RR using a Kongsberg EM120 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107435
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KNOX10RR using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491848
title: French norms for images, Bonin et al. (2003)

description: French norms for name agreement, image agreement, conceptual familiarity, visual complexity, image variability, age of acquisition, and naming latencies"<br>reference_to_cite: "Bonin, P., Peereman, R., Malardier, N., Meot, A., & Chalard, M. (2003). A new set of 299 pictures for psychololinguistic studies: French norms for name agreement, image agreement, conceptual familiarity, visual complexity, image variability, age of acquisition, and naming latencies Behavior Research Methods, Instruments, & Computers, Vol. 35, Issue 1, 158-167."<br>url_information: "LEAD server ( http://leadserv.u-bourgogne.fr/bases/pictures/ )"
DOI: 10.6084/m9.figshare.7491854
title: BruLex, Content et al. (1990)

description: The Brulex directory includes the different versions fo the BRULEX database. BRULEX was developed about ten years ago, for the purpose of facilitating selection and control of experimental materials in psycholinguistic experiments on lexical processing. It contains a large number of informations that were typed manually by benevolent collaborators. Potential users should be aware that the current version, which hasn't been changed since '89, contains a number of transcription errors and inaccuracies."<br>reference_to_cite: "Content, A., Mousty, P., & Radeau, M. (1990). Brulex. Une base de données lexicales informatisée pour le français écrit et parlé [Brulex, A lexical database for written and spoken French]. <i>L'Année Psychologique, 90</i>, 551-566."<br>url_information: "ULB server ( ftp://ftp.ulb.ac.be/pub/packages/psyling/ )"
DOI: 10.6084/m9.figshare.7491848.v1
title: French norms for images, Bonin et al. (2003)

description: French norms for name agreement, image agreement, conceptual familiarity, visual complexity, image variability, age of acquisition, and naming latencies"<br>reference_to_cite: "Bonin, P., Peereman, R., Malardier, N., Meot, A., & Chalard, M. (2003). A new set of 299 pictures for psychololinguistic studies: French norms for name agreement, image agreement, conceptual familiarity, visual complexity, image variability, age of acquisition, and naming latencies Behavior Research Methods, Instruments, & Computers, Vol. 35, Issue 1, 158-167."<br>url_information: "LEAD server ( http://leadserv.u-bourgogne.fr/bases/pictures/ )"
DOI: 10.7284/107433
title: Expendable Probe data collected during research cruise KNOX10RR using a Sippican MK21 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491836
title: Pathway functional enrichment result for up-down regulation genes

description: Pathway functional enrichment result for up-down regulation genes - RNAseq flax seedlings (Nike, Regina, 14 day old) after F. oxysporum infection (24h and 48h)
DOI: 10.6084/m9.figshare.7491839
title: Lexical Decision, Balota et al. (1999)

description: Lexical Decision Corpora<br>reference_to_cite: "Balota, D.A., Cortese, M.J., & Pilotti, M. (1999). Item-level analyses of lexical decision performance: Results from a mega-study. In Abstracts of the 40th Annual Meeting of the Psychonomics Society (p. 44). Los Angeles, CA: Psychonomic Society."<br>url_information: "Balota's website ( http://www.artsci.wustl.edu/~dbalota/naming.html )"
DOI: 10.6084/m9.figshare.7491818
title: ARC nonword database, Rastle et al. (2002)

description: Database of 358,534 nonwords<br>reference_to_cite: "Rastle, K., Harrington, J., & Coltheart, M. (2002). 358,534 nonwords: The ARC Nonword Database. Quarterly Journal of Experimental Psychology, 55A, 1339-1362."<br>url_information: "MACS website ( http://rosella.bhs.mq.edu.au/~nwdb/ )"<br>
DOI: 10.7284/107430
title: GNSS (Global Navigation Satellite System) data collected during research cruise KNOX10RR using a Furuno GP-90D instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491839.v1
title: Lexical Decision, Balota et al. (1999)

description: Lexical Decision Corpora<br>reference_to_cite: "Balota, D.A., Cortese, M.J., & Pilotti, M. (1999). Item-level analyses of lexical decision performance: Results from a mega-study. In Abstracts of the 40th Annual Meeting of the Psychonomics Society (p. 44). Los Angeles, CA: Psychonomic Society."<br>url_information: "Balota's website ( http://www.artsci.wustl.edu/~dbalota/naming.html )"
DOI: 10.7284/107431
title: GNSS (Global Navigation Satellite System) data collected during research cruise KNOX10RR using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491809
title: Impacts on CPUE from vessel fleet composition changes in an Australian lobster (<i>Jasus edwardsii</i>) fishery

description: The Australian Victorian Western Zone rock lobster fishery is assessed using standardised catch-per-unit-effort (CPUE). Nominal CPUE declined over 1978–2009, but this underrepresents the estimated decline in abundance, and since 2009 standardised CPUE rose notably less than nominal CPUE. This study identified vessel as a key factor that explains the discrepancy between nominal and standardised CPUE. The composition of the fleet changed since 2009, under the pressure of constraining total allowable catch quotas, with vessels exiting the fishery having substantially lower estimated catchability, which increased the average catchability of the remaining fleet. New diagnostic indices were constructed to quantify discrepancies between trends in nominal and standardised CPUE that assisted in identifying periods during which both catchability and fleet composition changed.
DOI: 10.6084/m9.figshare.7491809.v1
title: Impacts on CPUE from vessel fleet composition changes in an Australian lobster (<i>Jasus edwardsii</i>) fishery

description: The Australian Victorian Western Zone rock lobster fishery is assessed using standardised catch-per-unit-effort (CPUE). Nominal CPUE declined over 1978–2009, but this underrepresents the estimated decline in abundance, and since 2009 standardised CPUE rose notably less than nominal CPUE. This study identified vessel as a key factor that explains the discrepancy between nominal and standardised CPUE. The composition of the fleet changed since 2009, under the pressure of constraining total allowable catch quotas, with vessels exiting the fishery having substantially lower estimated catchability, which increased the average catchability of the remaining fleet. New diagnostic indices were constructed to quantify discrepancies between trends in nominal and standardised CPUE that assisted in identifying periods during which both catchability and fleet composition changed.
DOI: 10.7284/107437
title: Gravimeter data collected during research cruise KNOX10RR using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107432
title: Meteorological Station data collected during research cruise KNOX10RR using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107436
title: Multibeam Echosounder data collected during research cruise KNOX10RR using a Kongsberg EM120 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107438
title: Singlebeam Echosounder data collected during research cruise KNOX10RR using a Knudsen 320B/R instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107434
title: Winch data collected during research cruise KNOX10RR using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107444
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KNOX11RR using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107440
title: GNSS (Global Navigation Satellite System) data collected during research cruise KNOX11RR using a Furuno GP-90D instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107441
title: GNSS (Global Navigation Satellite System) data collected during research cruise KNOX11RR using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107446
title: Gravimeter data collected during research cruise KNOX11RR using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107439
title: Magnetometer data collected during research cruise KNOX11RR using a Marine Magnetics SeaSPY instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107442
title: Meteorological Station data collected during research cruise KNOX11RR using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107445
title: Multibeam Echosounder data collected during research cruise KNOX11RR using a Kongsberg EM120 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107454
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KNOX12RR using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491668
title: antworth

description: Dictionary file called Antworth which had 89,524 words in it which was touted as a resource for password crackers.
DOI: 10.7284/107453
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise KNOX12RR using a Sea-Bird SBE-911+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7491641
title: Plastics in the Antarctic Peninsula_Lacerdaetal

description: Concentration of plastics sampled in sea surface waters around the Antarctic Peninsula. (published on the <i>Scientific Reports</i> by Lacerda et al.)
DOI: 10.6084/m9.figshare.7491668.v2
title: antworth

description: Dictionary file called Antworth which had 89,524 words in it which was touted as a resource for password crackers.
DOI: 10.6084/m9.figshare.7491641.v1
title: Plastics in the Antarctic Peninsula_Lacerdaetal

description: Concentration of plastics sampled in sea surface waters around the Antarctic Peninsula. (published on the <i>Scientific Reports</i> by Lacerda et al.)
DOI: 10.6084/m9.figshare.7491668.v1
title: antworth

description: Dictionary file called Antworth which had 89,524 words in it which was touted as a resource for password crackers.