cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0885181.10fu
title: SH0885181.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0885182.10fu
title: SH0885182.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.u2ka2h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Trechus babinjensis Jeannel, 1927",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096009-240626123714530/datasets/export for details.
DOI: 10.15468/dl.wb3wu5
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Pardosa eiseni (Thorell, 1875)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 271 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096010-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0885183.10fu
title: SH0885183.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0885184.10fu
title: SH0885184.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0885185.10fu
title: SH0885185.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0885186.10fu
title: SH0885186.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0885187.10fu
title: SH0885187.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.1002070
title: US COOP monthly data

description: This file contains US COOP monthly temperature records which we downloaded from NOAA NCDC's public ftp in 2011. It no longer seems to be available on the NOAA NCDC website, but we used this dataset for some of our research. So, I am uploading this 2011 version for the benefit of those trying to reproduce our results.
DOI: 10.6084/m9.figshare.1002073.v1
title: Gaussian Job Archive for C24H20Mg2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1002065
title: Database containing demographic data of each patient and laboratory data of each patient and control

description: This file contains raw data of all laboratory measurements presented in the paper. In addition, the file contains raw demographic data of the patients as summarized in the paper in Table 1.
DOI: 10.6084/m9.figshare.1002070.v1
title: US COOP monthly data

description: This file contains US COOP monthly temperature records which we downloaded from NOAA NCDC's public ftp in 2011. It no longer seems to be available on the NOAA NCDC website, but we used this dataset for some of our research. So, I am uploading this 2011 version for the benefit of those trying to reproduce our results.
DOI: 10.6084/m9.figshare.1002064
title: NKX3.1 expression and interactions Dataset

description: Data set 1: Summary of NKX3.1 interacting proteins Data set 1A: All proteins identified in four independent mock and FLAG-NKX3.1 affinity purifications<br>Data set 1B: List of 58 high confidence NKX3.1 interacting proteins<br>Data set 1C: Lists of proteins shown in the Venn diagram in Fig. 1B Data set 2: Summary of NKX3.1-regulated gene expression Data set 2A: All raw mRNA expression data<br>Data set 2B: Averaged mRNA expression data<br>Data set 2C: List of mRNAs that show a greater than 5-fold change (p greater or even to 0.05) in cells expressing NKX3.1 for 7 hours (= "5x data set")<br>Data set 2D: list of NKX3.1 regulated genes containing conserved AP1 binding sites<br>Data set 2E: List of NKX3.1 regulated genes containing conserved SRF binding sites<br>Data set 2F: List of NKX3.1 regulated mRNAs that are inversely regulated in human prostate cancer derived cell lines
DOI: 10.6084/m9.figshare.1002067
title: Dataset 1. Rosa rubiginosa L. occurrence data (occurrences_R.rubiginosa.csv, 416 kb)

description: Presence points of R. rubiginosa in its native (N=12132) and invasive (N=1425) range derived from the literature and field data. Geographical positions are given in decimal degrees (longitude, latitude, WGS84). For the final MAXENT model we included a randomly reduced native dataset (3033 presence points) until data points were evenly distributed and no spatial autocorrelation was detected in the model residuals.
DOI: 10.6084/m9.figshare.1002064.v1
title: NKX3.1 expression and interactions Dataset

description: Data set 1: Summary of NKX3.1 interacting proteins Data set 1A: All proteins identified in four independent mock and FLAG-NKX3.1 affinity purifications<br>Data set 1B: List of 58 high confidence NKX3.1 interacting proteins<br>Data set 1C: Lists of proteins shown in the Venn diagram in Fig. 1B Data set 2: Summary of NKX3.1-regulated gene expression Data set 2A: All raw mRNA expression data<br>Data set 2B: Averaged mRNA expression data<br>Data set 2C: List of mRNAs that show a greater than 5-fold change (p greater or even to 0.05) in cells expressing NKX3.1 for 7 hours (= "5x data set")<br>Data set 2D: list of NKX3.1 regulated genes containing conserved AP1 binding sites<br>Data set 2E: List of NKX3.1 regulated genes containing conserved SRF binding sites<br>Data set 2F: List of NKX3.1 regulated mRNAs that are inversely regulated in human prostate cancer derived cell lines
DOI: 10.6084/m9.figshare.1002065.v1
title: Database containing demographic data of each patient and laboratory data of each patient and control

description: This file contains raw data of all laboratory measurements presented in the paper. In addition, the file contains raw demographic data of the patients as summarized in the paper in Table 1.
DOI: 10.6084/m9.figshare.1002067.v1
title: Dataset 1. Rosa rubiginosa L. occurrence data (occurrences_R.rubiginosa.csv, 416 kb)

description: Presence points of R. rubiginosa in its native (N=12132) and invasive (N=1425) range derived from the literature and field data. Geographical positions are given in decimal degrees (longitude, latitude, WGS84). For the final MAXENT model we included a randomly reduced native dataset (3033 presence points) until data points were evenly distributed and no spatial autocorrelation was detected in the model residuals.
DOI: 10.6084/m9.figshare.1002061
title: mcrA and pmoA gene sequences from rice plant (Oryza sativa) endophyte Sanger sequencing

description: Sanger sequences from rice endophyte mcrA and pmoA clone libraries.
DOI: 10.6084/m9.figshare.1002048
title: Lagomorph diversity and extinction risk

description: R code and data used. See "DataDefinition.csv" for variable details and "metadata.csv" for file titles and descriptions.
DOI: 10.6084/m9.figshare.1002050
title: Gaussian Job Archive for C24H20Mg2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1002061.v1
title: mcrA and pmoA gene sequences from rice plant (Oryza sativa) endophyte Sanger sequencing

description: Sanger sequences from rice endophyte mcrA and pmoA clone libraries.
DOI: 10.6084/m9.figshare.1002048.v1
title: Lagomorph diversity and extinction risk

description: R code and data used. See "DataDefinition.csv" for variable details and "metadata.csv" for file titles and descriptions.
DOI: 10.6084/m9.figshare.1002043
title: Missing clade constraints for PASTIS

description: List of inclusions/exclusions for taxa with no sequence data and no sister species in the constraint tree.
DOI: 10.6084/m9.figshare.1002050.v1
title: Gaussian Job Archive for C24H20Mg2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1002045
title: Gaussian Job Archive for C6H5(1-,3)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1002043.v1
title: Missing clade constraints for PASTIS

description: List of inclusions/exclusions for taxa with no sequence data and no sister species in the constraint tree.
DOI: 10.6084/m9.figshare.1002045.v1
title: Gaussian Job Archive for C6H5(1-,3)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1000786
title: Meadow_etal_Phones

description: DNA sequence files and metadata accompanying a manuscript that details the shared bacterial communities found on people's fingers and their smartphones. For information about processing and analysis, please read carefully the instructions in README.md.
DOI: 10.6084/m9.figshare.1000787
title: README

description: Instructions for Meadow_etal_Phones sequence file processing. It's all in here.
DOI: 10.6084/m9.figshare.1000783
title: R2am.gz

description: Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000784
title: R1al.gz

description: Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000785
title: Bioinformatic approaches to functionally characterise RNAs

description: This is my Rutherford Discovery Fellowship application.
DOI: 10.6084/m9.figshare.1000787.v1
title: README

description: Instructions for Meadow_etal_Phones sequence file processing. It's all in here.
DOI: 10.6084/m9.figshare.1000782
title: R2al.gz

description: Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000783.v1
title: R2am.gz

description: Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000784.v1
title: R1al.gz

description: Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000785.v1
title: Bioinformatic approaches to functionally characterise RNAs

description: This is my Rutherford Discovery Fellowship application.
DOI: 10.6084/m9.figshare.1000786.v1
title: Meadow_etal_Phones

description: DNA sequence files and metadata accompanying a manuscript that details the shared bacterial communities found on people's fingers and their smartphones. For information about processing and analysis, please read carefully the instructions in README.md.
DOI: 10.6084/m9.figshare.1000779
title: R2ai.gz

description: Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000780
title: R2aj.gz

description: Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000781
title: R2ak.gz

description: Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000782.v1
title: R2al.gz

description: Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000778
title: R1ai.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000780.v1
title: R2aj.gz

description: Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000781.v1
title: R2ak.gz

description: Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000778.v1
title: R1ai.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000779.v1
title: R2ai.gz

description: Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000786.v2
title: Meadow_etal_Phones

description: DNA sequence files and metadata accompanying a manuscript that details the shared bacterial communities found on people's fingers and their smartphones. For information about processing and analysis, please read carefully the instructions in README.md.
DOI: 10.6084/m9.figshare.1000774
title: R2ae.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000775
title: R2af.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000776
title: R2ag.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000776.v1
title: R2ag.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000777
title: R2ah.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000773
title: R2ad.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000774.v1
title: R2ae.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000775.v1
title: R2af.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000777.v1
title: R2ah.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000786.v4
title: Meadow_etal_Phones

description: DNA sequence files and metadata accompanying a manuscript that details the shared bacterial communities found on people's fingers and their smartphones. For information about processing and analysis, please read carefully the instructions in README.md.
DOI: 10.6084/m9.figshare.1000770
title: R2aa.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000771
title: R2ab.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000772
title: R2ac.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000770.v1
title: R2aa.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000771.v1
title: R2ab.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000772.v1
title: R2ac.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000773.v1
title: R2ad.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000786.v3
title: Meadow_etal_Phones

description: DNA sequence files and metadata accompanying a manuscript that details the shared bacterial communities found on people's fingers and their smartphones. For information about processing and analysis, please read carefully the instructions in README.md.
DOI: 10.6084/m9.figshare.1000765
title: R1af.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000766
title: R1ac.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000768
title: R1ak.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000769
title: R1am.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000765.v1
title: R1af.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000767
title: R1aj.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000769.v1
title: R1am.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000764
title: R1ah.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.
DOI: 10.6084/m9.figshare.1000766.v1
title: R1ac.gz

description: Part of Meadow_etal_Phones fileset. Zipped sequence file fragment. See README.md for instructions.