cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.rn7c5/4
title: Wind Speed

description: Spring wind speeds recorded in 70 study shrubs where shrub aboveground canopy and stems was either left intact or physically removed with clippers. Wind speeds were recorded with a digital handheld anemometer 3 cm above the soil surface in the same location in each shrub on each visit.
DOI: 10.5061/dryad.rn7c5/5
title: Bromus Mass

description: Final aboveground dry biomass of Bromus diandrus (Poaceae) plants grown either in soil from shrub patches or from outside of shrub patches and either under shrubs or outside of shrubs.
DOI: 10.5061/dryad.rn7c5/6
title: Community Cover

description: Absolute percent cover of vascular plants in 92 pairs of shrub covered and open habitat patches. Values are ocular estimates of cover measured in a 20 x 30 cm quadrat placed at a random location within each shrub and open habitat patch.
DOI: 10.5061/dryad.rn7c5/7
title: Community Abundance

description: Number of individual vascular plants rooted in 92 pairs of shrub covered and open habitat patches. Values are total numbers of individuals of each species counted in a 20 x 30 cm quadrat placed at a random location within each shrub and open habitat patch.  Quadrat locations were the same as those used for the estimated plant cover values in "CommunityCover.csv".
DOI: 10.5061/dryad.rn7c5/8
title: Removal Experiment

description: The total aboveground biomass of vascular plant species collected in 70 experimental shrub patches in 2010 and 2011.  Values are total dry mass of aboveground plant material for each species harvested from a 20 x 30 cm quadrat placed at a random location within each experimental shrub patch.  Different quadrat locations were sampled in 2010 and 2011.
DOI: 10.5061/dryad.rn7c5/9
title: Dune Species

description: Life-history, nativity and family information for the plant species found in the study plots.
DOI: 10.5061/dryad.0f4np/1
title: data
DOI: 10.5061/dryad.1j6v6/2
title: Fasta S2 Cytb115Species from GenBank

description: Alignment of cytb sequences from 115 rodent species from GenBank
DOI: 10.5061/dryad.35321/14
title: Ctenophorus phylogenetic tree

description: Ctenophorus phylogenetic tree used in community phylogenetic analyses
DOI: 10.5061/dryad.3bn27/1
title: Data from: Estimating population size in the presence of temporary migration using a joint analysis of telemetry and capture recapture data

description: The file Data.R is a script file that will build Capture recapture matrices over 6 years of sampling in the Murray River, Australis.  The first part of the script provides the raw data, which are then processed into matrices for use in the CMR model.
DOI: 10.5061/dryad.4407g/1
title: Telomere length data

description: This data includes telomere length for chicks at different ages (10, 70, 200 and 300 days-old) and telomere lengths of their parents.This study was conducted on king penguins (Aptenodytes patagonicus), in the colony of “La Grande Manchotière” (20 000 breeding pairs) Possession island, Crozet archipelago (Terres Australes Antarctiques Françaises) located 46° 25’S; 51° 52’E. Data were collected during two consecutive field seasons (2009 and 2010).
DOI: 10.5061/dryad.45157/1
title: data_semiVarianceToIdentifyingMovementModes

description: Description of columns in data set: "gazelle": identifies individual gazelles.“time”: time is measured in seconds from the first relocation of every gazelle.“x”, “y”: coordinates are measured in meters from the individual mean. The projection was azimuthal equidistant centered at the population mean.
DOI: 10.5061/dryad.54722/1
title: Spigler_etalEVOL_DRYAD_traitdata

description: Quantitative trait data for Fragaria mapping population
DOI: 10.5061/dryad.63872/1
title: populationData

description: This file contains the population growth rate and vital rates of the cheatgrass populations established during the experiment.
DOI: 10.5061/dryad.6b7c1/2
title: sphaero_psaB

description: Extracted from:http://treebase.org/ study id 11663
DOI: 10.5061/dryad.6b7c1/3
title: sphaero-4gene

description: Extracted from:http://treebase.org/ study id 11663
DOI: 10.5061/dryad.6bt6k/3
title: Ord_TJ-ANBEH-D-12-00933R1_species-means
DOI: 10.5061/dryad.6h822/10
title: Figure_5_Tank5(A25A)

description: Paternity analysis for Tank 5 (A25A). Study Day indicates the day on which each embryo analysed was spawned. The first 3 rows in the table are the parent fish and below that are the 20 selected offspring. The microsatellite loci used for analysis are listed along the top of the table and corresponding allelles are detailed below.
DOI: 10.5061/dryad.6h822/20
title: Figure_5_Tank15(B17A)

description: Paternity analysis for Tank 15 (B17A). Study Day indicates the day on which each embryo analysed was spawned. The first 3 rows in the table are the parent fish and below that are the 20 selected offspring. The microsatellite loci used for analysis are listed along the top of the table and corresponding allelles are detailed below.
DOI: 10.5061/dryad.6h822/21
title: Figure_5_Tank16(B17B)

description: Paternity analysis for Tank 16 (B17B). Study Day indicates the day on which each embryo analysed was spawned. The first 3 rows in the table are the parent fish and below that are the 20 selected offspring. The microsatellite loci used for analysis are listed along the top of the table and corresponding allelles are detailed below.
DOI: 10.5061/dryad.6h822/23
title: Figure_5_Tank18(B19A)

description: Paternity analysis for Tank 18 (B19A). Study Day indicates the day on which each embryo analysed was spawned. The first 3 rows in the table are the parent fish and below that are the 20 selected offspring. The microsatellite loci used for analysis are listed along the top of the table and corresponding allelles are detailed below.
DOI: 10.5061/dryad.6h822/4
title: Figure_4_8hr Viability

description: Embryo viability assessed at 8 hours post fertilisation, across the 10 day study periods of Experiment I and II (as indicated in table)
DOI: 10.5061/dryad.6h82b/10
title: within-head seed set -- analysis

description: For information on this R script see file "seedSetBasedOnPositionWithinHead.txt"
DOI: 10.5061/dryad.6h82b/11
title: within-head seed set -- readMe

description: This readMe files contains metadata on the data file "seedSetBasedOnPositionWithinHead.csv" and information about the script "seedSetBasedOnPositionWithinHead.r"
DOI: 10.5061/dryad.6h82b/5
title: Analysis of 2006 dataset- R script

description: Information about this R script is in file "flPhenology.xy.C1.readMe.txt"
DOI: 10.5061/dryad.6h82b/6
title: Analysis of 2005 dataset- R script

description: Information about this R script is in file "flPhenology.xy.C1.readMe.txt"
DOI: 10.5061/dryad.6h82b/7
title: R script that generates figures

description: Information about this R script is in file "flPhenology.xy.C1.readMe.txt"
DOI: 10.5061/dryad.6h82b/8
title: readMe file for flowering phenology datasets & analysis

description: Readme file for the following seven files: flPhenology.xy.C1.2005.csv, flPhenology.xy.C1.2006.csv, flPhenology.xy.C1.2007.csv, flPhenology.xy.C1.2005.r, flPhenology.xy.C1.2006.r, flPhenology.xy.C1.2007.r, and flPhenology.xy.C1.makeSixPanelFig.r.
DOI: 10.5061/dryad.6h82b/9
title: within-head seed set -- data

description: For metadata of this dataset see file "seedSetBasedOnPositionWithinHead.txt"
DOI: 10.5061/dryad.7b185/5
title: BAPS results

description: Input and result files from BAPS analysis
DOI: 10.5061/dryad.7d2g2/1
title: Dataset1

description: Nexus file for Dataset 1, 113-taxon dataset
DOI: 10.5061/dryad.7m6kg/76
title: Large and small morphs of Nectocaris, to scale (reconstruction)

description: A reconstruction of the large and small morphs of <i>Nectocaris</i>, to scale, constructed in Blender, using fossil material to constrain shape and proportions.
DOI: 10.5061/dryad.8nc6v/3
title: Kflavicollis_CR_dataset

description: nexus file with Control Region (CR) haplotypes of Kalotermes flavicollis (Isoptera: Kalotermitidae)
DOI: 10.5061/dryad.8p8tg/1
title: All_34populations_microsats

description: microsatellite data for 34 populations of Ostrinia furnacalis
DOI: 10.5061/dryad.8p8tg/2
title: COI_Haps FASTA format

description: mitochondrial COI gene haplotypes in Ostrinia furnacalis
DOI: 10.5061/dryad.8p8tg/3
title: COII_Haps FASTA format

description: mitochondrial COII gene haplotypes in Ostrinia furnacalis
DOI: 10.5061/dryad.8p8tg/4
title: ND1_Haps FASTA format

description: mitochondrial ND1 gene haplotypes in Ostrinia furnacalis
DOI: 10.5061/dryad.8p8tg/5
title: ND5_Haps FASTA format

description: mitochondrial ND5 gene haplotypes in Ostrinia furnacalis
DOI: 10.5061/dryad.b5np1/1
title: Leong_YSTbees_data

description: Field data was collected in Contra Costa County, California in 2011.
DOI: 10.5061/dryad.bj20f/1
title: Data

description: Social: Social treatments (L: non-social treatment, H: social treatment); relative fit: Relative fitness; R: Attempt to remount; D: Dispersal ability; S: Sex recognition sensitivity; E: Exploration in a new environment; The number indicates the age.
DOI: 10.5061/dryad.cb098/1
title: 115_Sciomyzidae_Garli_ML_5_search_reps
DOI: 10.5061/dryad.cb098/2
title: 115_Sciomyzidae_Garli_ML_200_bootstrap_reps
DOI: 10.5061/dryad.cb098/3
title: 115_Sciomyzidae_MrBayes
DOI: 10.5061/dryad.cb098/4
title: 115_Scio_RAxML_Unconstrained
DOI: 10.5061/dryad.cb098/5
title: 115_Scio_RAxML_Renocerinae_constrained
DOI: 10.5061/dryad.cb098/6
title: 59_Sciomyzidae_Unconstrained
DOI: 10.5061/dryad.d9q57/1
title: grasshoppers

description: see ReadMe
DOI: 10.5061/dryad.d9q57/2
title: butterflies

description: see ReadMe
DOI: 10.5061/dryad.d9q57/3
title: EnvVariables

description: see ReadMe
DOI: 10.5061/dryad.dd8h5/1
title: TetrahedralCalculations

description: This zip file contains MATLAB .m files to do calculations in the tetrahedron (directory TetrahedralCalculations), do the permutation tests (directory (LMP5), read an OceanOptics spectral file, convert spetra to bird eye data, and data on bird eyes and ambient light.
DOI: 10.5061/dryad.ff71n/3
title: Dietrich_Uriae_CO3_alignment_2
DOI: 10.5061/dryad.ff71n/4
title: Dietrich_Uriae_microsatellite_data_2
DOI: 10.5061/dryad.fk376/1
title: Hirsch et al. - germination data

description: Germination records used for the survival analysis. For each seed the corresponding origin (population and range), the day of germination (germination_day), the status in regards to the right censoring (1 = germinated; 0 = non-germinated but viable at the end of the experiment) and the corresponding temperature condition during the experiment (temperature_treatment) are provided.
DOI: 10.5061/dryad.gh317/1
title: Nasutitermes and outgroup COII haplotypes

description: Cytochrome oxidase II (COII) unique haplotypes for Nasutitermes samples and two outgroups. Genbank Accession Numbers and putative species are indicated.
DOI: 10.5061/dryad.gh317/2
title: Nasutitermes and outgroup 16S haplotypes

description: 16S rDNA (16S) unique haplotypes for Nasutitermes samples and two outgroups. Genbank Accession Numbers and putative species are indicated.
DOI: 10.5061/dryad.h0h3b/1
title: ShapeDescriptors

description: This zip file contains two MATLAB .m files which will convert a shape to a set of elliptical fourier coefficients, which uniquely describe its shape.  The other file converts back to the shape using few to all of the coefficients.
DOI: 10.5061/dryad.h5nc8/4
title: ForkLengthMarch

description: Fork Length (mm) on 22 March 2004 (brood year 2002)
DOI: 10.5061/dryad.kp14p/1
title: Allele sequences of the 200 C. jejuni isolates
DOI: 10.5061/dryad.m7rc3/3
title: MTML-msbayes input files

description: This is a ZIP file consisting of 17 pairs of input files for MTML-msBayes (Huang et al. 2011), which estimates the number of divergence events.  Each separate MTML-msBayes analysis requires 2 input files ("batch.masterIn.fromIM" and "obsSS.txt").  These have been labeled to differentiate the different analyses, which correspond to those listed in Table 2 of the paper.  Basin Codes et al: BRI = Brisbane, GOL = Gold Coast, LOG = Logan-Albert, MCY = Maroochy, MRY = Mary, NOO = Noosa, PIN = Pine, TCB = Tin Can Bay, CR = Control Region, PS = Pseudomugil signifier.
DOI: 10.5061/dryad.mr67p/1
title: Multilocus dataset for species tree analyses

description: edited sequence data for ND2, C-myc, and POMC for Hyperolius substriatus/puncticulatus
DOI: 10.5061/dryad.mr67p/2
title: Current_TMM_asc

description: Current Bioclim variables (30 arc second resolution) clipped to the extent of Tanzania, Malawi, and Mozambique
DOI: 10.5061/dryad.mt0j5/2
title: plastics_info
DOI: 10.5061/dryad.nd358/2
title: Raw Spectral Data Final

description: Contains reflectance data from the wings of Colias eurytheme, C. philodice, Pieris rapae, leaves of alfalfa (Medicago sativa), and irradiance data.
DOI: 10.5061/dryad.p281g/1
title: Tree Biomass Data from Madre de Dios, Peru

description: Directly-measured tree biomass data from Madre de Dios, Peru. Fifty-one trees were weighed, with diameters ranging from 10 to 169 cm. Twelve trees have diameters exceeding 100 cm. Dataset includes diameter, total height, height of the first branch, wood density, crown radius, crown area, an architectural classification (monopodial or not), wood density, stem mass, crown mass, and total aboveground biomass.
DOI: 10.5061/dryad.pj860/1
title: Shrestha et al_New Phytol 2013_Species and Data
DOI: 10.5061/dryad.qk12c/1
title: Table S5 - microsatellite allele frequencies

description: Microsatellite allele frequencies for the 26 loci analyzed in study for 16 field sites, including 6 green hawthorn, 4 western mayhaw, 3 blueberry hawthorn, and 3 southern red hawthorn populations. See Table 1 of text for site descriptions. Allele numbers represent the size (in base pairs) of the PCR amplified DNA fragment (including the repeat sequence) generated using locus specific primers for each microsatellite, as determined by capillary electrophoresis on a Beckman-Coulter CEQ8000.
DOI: 10.5061/dryad.qk12c/2
title: mtDNA sequence alignment

description: Clustal alignment of mtDNA sequences used in Figure 3. See Table S1 for accession numbers.
DOI: 10.5061/dryad.qk12c/3
title: Eclosion data

description: Table of laboratory eclosion data depicted in Figure 6.
DOI: 10.5061/dryad.r75t5/1
title: Morphological & genetic data for threespine sticklebacks from Switzerland and Iceland
DOI: 10.5061/dryad.rb06j/1
title: Supplement Table1_ANDRE ET AL_2013

description: Supplementary information on individuals of the Globigerinoides sacculifer plexus sequenced in the work by André et al. (2013)
DOI: 10.5061/dryad.rd0f6/5
title: Table S5: Laboratory heating experiment of species-specific thermal reaction norms in Calopteryx splendens and C. virgo

description: Repeated-measures analysis of laboratory heating experiments of C. splendens (N = 40) and C. virgo (N = 31) of both sexes. The dependent variables (=the repeat) was the thorax temperature at the start of the experiment experiment (“Pre-heating”) and at the end of the experiment, after three minutes under a heat lamp (“Post-heating”). The independent variables were Year (2009 and 2009) Species and Sex, which were factors, and ambient temperature at the start of the experiment was a continuous covariate. The significant Thorax temperature * Species interaction is illustrated in Supporting Figure S3. Pre-heating thorax temperature: r2 = 0.494, F6,64 = 12.402; P &lt; 0.001. Post-heating thorax temperature: r2 = 0.373, F6,64 = 7.926; P &lt; 0.001.
DOI: 10.5061/dryad.rd0f6/6
title: Figure S1: Unresolved phylogenetic tree used in the BiSSE analyses.

description: Unresolved tree used BiSSE analysis. Large horizontal triangles represent the size and divergence timings of the terminally unresolved clades. Gray triangles are clades with majority clear-winged taxa, black triangles are clades with majority pigmented taxa. Black and white squares on the tips represent binary wing states (transparent = white, pigmented = black), used in the analysis. Red squares mark taxa with ranges north of 23° N.
DOI: 10.5061/dryad.rd0f6/7
title: Figure S2: Phylogenetic trees illustrating the correlation between male wing pigmentation and latitude

description: Phylogenetic trees showing the correlation of A. male wing pigment and B. latitude. Trees have been pruned of subspecies and had ranges altered so as to create a more representative sampling from those genera. Ranges that have been altered have been marked “Range changed to tropical” and have been filled with a red square. Taxa with wing pigment are filled in with black, transparent wings with white. Temperate ranges are filled in with black, tropical with white. Ancestral reconstruction method is maximum parsimony with branch lengths equal to 1. Gray ancestral nodes represent an ambiguous trait reconstruction for that node.
DOI: 10.5061/dryad.rd0f6/8
title: Figure S3: Heating rates of Calopteryx splendens and C. virgo in a laboratory experiment

description: Result of from a repeated-measures analysis of a laboratory experiments aimed to investigate species-differences in heating rates of Calopteryx splendens (open symbols, dashed line) and C. virgo (closed symbols, solid line). Least square means ± 95 Confidence Intervals (CI:s) are depicted and have been estimated from the model in Supporting Table S5. Pre-heating and post-heating show the thorax temperatures of both species at the start of the experiment and after three minutes under a heat lamp.
DOI: 10.5061/dryad.rd0f6/9
title: Mass data for field-caught male and female Calopteryx splendens and C. virgo

description: Data in this file are the mass data (in g) obtained in 2011 and 2012 of field-caught male and female Calopteryx splendens and C. virgo from Klingavälsåns Naturreservat (Scania, Lunds Kommun, Sweden). These data are shown in Fig. 6B in the article.
DOI: 10.5061/dryad.rf161/1
title: Appendix 1: Cr, 761 taxa

description: A nexus file having mitochondrial control region sequences from 760 house mice (Mus musculus) and one from outgroup taxon Mus macedonicus being modified for alignment. This nexus file was used to construct maximum likelihood trees and Neighbor-Net networks.
DOI: 10.5061/dryad.rf161/10
title: Appendix 10: Concatenated, CAS

description: A nexus file having 49 concatenated mitochondrial DNA haplotypes (control region and cytochrome b gene) belong to the subgroup CAS-1 of the subspecies group Mus musculus castaneus (CAS) and a outgroup taxon belong to the subgroup CAS-2 (BRC3024). This nexus file was used to construct Neighbor-Net networks.
DOI: 10.5061/dryad.rf161/11
title: Appendix 11: Concatenated, MUS

description: A nexus file having 39 concatenated mitochondrial DNA haplotypes (control region and cytochrome b gene) representing the subspecies group Mus musculus musculus (MUS) and a outgroup taxon Mus musculus castaneus (HI481). This nexus file was used to construct Neighbor-Net networks.
DOI: 10.5061/dryad.rf161/12
title: Appendix 12: Supplementary Table S1

description: List of mouse individuals used in this study for determination of mitochondrial sequences.
DOI: 10.5061/dryad.rf161/13
title: Appendix 13: Supplementary Figure S1

description: Figure S1. Mismatch distributions for Mus musculus subspecies groups and sub-groups therein in a variety of datasets, CAS-1 (a), CAS-1a (b), CAS-1b (c), MUS (d), MUS-1 (e), MUS-1a (f), MUS-1b (g), MUS-1c (h), MUS-2 (i), and DOM (j) using DNASP v5. X axis: number of pairwise differences. Y axis: the continuous and interrupted (connecting circles) lines indicate the expected and observed distributions.
DOI: 10.5061/dryad.rv857/1
title: Data for a paper at Biology Letters

description: Data for a paper titled, "Human face structure correlates with professional baseball performance: insights from professional Japanese baseball players," at Biology Letters
DOI: 10.5061/dryad.sq37v/1
title: Schrey et al House Sparrow Kenya Msat

description: Genpop data file of Kenyan house sparrows. Abbreviations are defined in text.
DOI: 10.5061/dryad.v47s1/1
title: DNA data, R scripts, life history data

description: Data used in phylogenetic and comparative analyses.
DOI: 10.5061/dryad.099s2/5
title: Supp04_HDY_11_OR0383RR

description: Supplemental information for the haplotype inferences with Phase and with the ELB algorithm.
DOI: 10.5061/dryad.12j05/1
title: Lozier_Bimp-Bpen-RADtags_MolEcol_Dryad_120813

description: ######## Description of files for Lozier et al. "Revisiting comparisons of genetic diversity in stable and declining species: Assessing genome-wide polymorphism in North American bumble bees using RAD sequencing" for Mol. Ecol. ######## Files contained in "Lozier_Bimp-Bpen-RADtags_MolEcol_Dryad_120813.zip" ######## imp_bamfiles: bam formatted alignment files for each individual used in the paper for B. impatiens, indexed by samtools; note file names correspond with county and state listed in the main paper, and headers contain the actual specimen ID number. imp_radreferencegenome: fasta file (and fai index) for the B. impatiens "RAD reference" genome used for aligning RAD tag reads. pen_bamfiles: bam formatted alignment files for each individual used in the paper for B. pensylvanicus, indexed by samtools; note file names correspond with county and state listed in the main paper, and headers contain the actual specimen ID number. pen_radreferencegenome: fasta file (and fai index) for the B. impatiens "RAD reference" genome used for aligning RAD tag reads. ######## The variant call formatted  files (VCF 4.1) that are used for "Filter Set 1" in the paper. The files named: Bombus_imp_stringentRAD_DP_HWEfiltered.vcf Bombus_pen_stringentRAD_DP_HWEfiltered.vcf contain sample names as referred to in @PG in the headers of the .bam files (specimen IDs) that were used in actual analyses in the paper. The files named: Lozier_Bombus_imp_Finalvcf.vcf Lozier_Bombus_pen_Finalvcf.vcf contain sample names renamed to State/County format for easier interpretation, but should otherwise be identical. These can readily be further filtered by other criteria using software such as vcftools, or are small enough to be manipulated by excel if so desired.######## Also included is an excel file "ANGSD_ThetaPi_Bpen_Bimp_LozierBombusRADtags_DRYAD.xls" This file contains per-site estimates of Theta_pi (or nucleotide diversity) from ANGSD, sorted by Chromosome (RADref) and position. ######## please contact jlozier@as.ua.edu with any problems!
DOI: 10.5061/dryad.1vv8v/1
title: age1

description: results of first life table experiment
DOI: 10.5061/dryad.1vv8v/2
title: age2

description: results of second life table experiment
DOI: 10.5061/dryad.2m3v4/1
title: Data files related to CO1 diversification analyses

description: This zip file contains data related to the diversification analyses. This includes the cytochrome c oxidase 1 DNA alignment in fasta format, the time-calibrated phylogenetic tree in newick format and nexus format (with FigTree annotations including node posterior probabilities and 95% credibility intervals) as well as the state file used in BiSSE as csv.
DOI: 10.5061/dryad.2m3v4/2
title: Data files for salmonid nuclear gene paralogs

description: This zip file contains 18 nucleotide sequence alignment files in fasta format that were combined in the BEAST analyses that led to the dating of the salmonid whole genome duplication (WGD) event and in a range of other phylogenetic analyses described in the paper (see Figure 2, and Figure S20 and Figure S27 in the electronic supplementary material). Each alignment is in frame, so can be translated into coded protein data easily. These files have names that can be attached to individual phylogenetic tree data provided in the electronic supplementary material of the paper (Figures S1-S18). Note: the nomenclature for species is identical across alignments as follows: Osmerus = Osmerus mordax; Esox = Esox Lucius; Ss1 = Salmo salar WGD paralog 1; Ss2 = S. salar WGD paralog 2; Om1 = Oncorhynchus mykiss WGD paralog 1; Om2 = O. mykiss WGD paralog 2; Cl1 = Coregonus lavaretus WGD paralog 1; Cl2 = C. lavaretus WGD paralog 2; Tt1 = Thymallus thymallus WGD paralog 1; Tt2 = T. thymallus WGD paralog 2.