cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60797/irj.2024.150.152.1
title: Основные инструменты SEO-оптимизации

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.6084/m9.figshare.c.3605246_d3.v1
title: Additional file 4: of A probabilistic algorithm to process geolocation data

description: R script for sensitivity analyses. (TXT 9 kb)
DOI: 10.60797/irj.2024.150.152.3
title: Проблемы оптимизации сайтов

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.60797/irj.2024.150.154.2
title: Распространенность микрофлоры кариозных полостей после препарирования и после воздействия красным и ИК лазерным излучением в основной и группе сравнения

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.6084/m9.figshare.c.3605273_d1.v1
title: MOESM1 of Species delimitation in the White-faced Cuckoo-dove (Turacoena manadensis) based on bioacoustic data

description: Additional file 1: Appendix. Master data sheet. Abbreviations: AVoCet - Avian Vocalizations Center at http://avocet.zoology.msu.edu ; xeno-canto - Xeno-Canto Sound Library at http://www.xeno-canto.org ; McCauley - McCauley Sound Library at http://www.mccauleysound.com ; IBC - Internet Bird Collection at http://www.ibc.lynxeds.com .
DOI: 10.25574/62705
title: Chandra X-ray Observatory ObsId 62705
DOI: 10.17863/cam.83319
title: Research data supporting "Chiral Self-Assembly of Cellulose Nanocrystals is Driven by Crystallite Bundles"

description: A detailed summary is provided in the file "DataSummary.pdf" that accompanies the dataset. Note that the total dataset size is approximately 3.7 GB.
DOI: 10.6084/m9.figshare.c.3605375_d2.v1
title: Additional file 3: of Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus

description: Position of TrmBL1 binding sites and occurrences of the Thermococcales Glycolytic Motif (TGM) in the P. furiosus genome. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3605333_d8.v1
title: Additional file 7: of Transcriptome analysis of seed dormancy after rinsing and chilling in ornamental peaches (Prunus persica (L.) Batsch)

description: GO enrichment analysis. Raw data of Enrichment of gene ontology terms in differentially expression sequences in Prunus persica (L.) Batsch. (XLSX 93Â kb)
DOI: 10.17863/cam.41573
title: Research data supporting "Checking responses of goal- and sign-trackers are differentially affected by threat in a rodent analogue of obsessive-compulsive disorder"

description: These files contain the behavioural data reported in Experiment 1 (B3.462 data for publication) and Experiment 2 (B3.470 data for publication) of Vousden et al. (2020). Rats were classified as sign-trackers or goal-trackers based on their performance on an autoshaping task. They were also trained on the Observing Response Task, which allows the measurement of OCD-like dysfunctional checking behaviour. In Experiment 1, the effects of manipulating the uncertainty of reinforcement and perceived threat on dysfunctional checking were assessed. In Experiment 2, the effects of actual threat (i.e. punishment) on dysfunctional checking were assessed. Also included is another Excel file which contains further information on how to interpret the spreadsheets and more detailed methodological information.
DOI: 10.6084/m9.figshare.c.3605375_d5.v1
title: Additional file 6: of Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus

description: Gene-annotation enrichment analysis. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3605381_d1.v1
title: Additional file 1: Table S1. of Widespread hepatitis B virus genotype G (HBV-G) infection during the early years of the HIV epidemic in the Netherlands among men who have sex with men

description: Contains the sequences of the PCR-primers used in the study. (XLS 39Â kb)
DOI: 10.6084/m9.figshare.c.3605375_d6.v1
title: Additional file 4: of Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus

description: Position of the TrmBL1 binding sites in relation to annotated genes, RNA transcripts and promoter regions and differential expression of these genes under glycolytic versus gluconeogenic growth conditions. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3605375_d8.v1
title: Additional file 1: of Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus

description: Used primer sequences and plasmids. (XLSX 24Â kb)
DOI: 10.17863/cam.64600
title: Research data supporting "Engineered MATE multidrug transporters reveal two functionally distinct ion-coupling pathways in NorM from Vibrio cholerae"

description: Multidrug and toxic compound extrusion (MATE) transport proteins confer multidrug resistance on pathogenic microorganisms and affect pharmacokinetics in mammals. Our understanding of how MATE transporters work, has mostly relied on protein structures and MD simulations. However, the energetics of drug transport has not been studied in detail. Many MATE transporters utilise the electrochemical H+ or Na+ gradient to drive substrate efflux, but NorM-VC from Vibrio cholerae can utilise both forms of metabolic energy. To dissect the localisation and organisation of H+ and Na+ translocation pathways in NorM-VC we engineered chimaeric proteins in which the N-lobe of H+-coupled NorM-PS from Pseudomonas stutzeri is fused to the C-lobe of NorM-VC, and vice versa. Our findings in drug binding and transport experiments with chimaeric, mutant and wildtype transporters highlight the versatile nature of energy coupling in NorM-VC, which enables adaptation to fluctuating salinity levels in the natural habitat of V. cholerae. The research data in this dataset record support the publication by Raturi et al. in Communications Biology and refer to the figures that are incorporated in the paper, and the DNA and protein sequences of the NorM protein under study. Descriptions of the experimental details and statistical analyses are included in the Materials and Methods and figure legends of the paper.
DOI: 10.6084/m9.figshare.c.3605399_d1.v1
title: Additional file 1: Table S1. of High-performance web services for querying gene and variant annotation

description: The gene-specific annotation fields available from MyGene.info. (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3605501_d2.v1
title: MOESM4 of Defining rules of CD8+ T cell expansion against pre-erythrocytic Plasmodium antigens in sporozoite-immunized mice

description: Additional file 4. Title: Common peptides from syntenic orthologues of P. falciparum 3D7/P. vivax Sal1. This file provides multiple worksheets listing â Ľ8 amino acid contiguous stretches of homology for P. falciparum 3D7/P. vivax Sal1 syntenic orthologue pairs for all lifecycle stages, sporozoite stage and liver stage proteins.
DOI: 10.17863/cam.22843
title: Research data supporting "Long-lived nonequilibrium superconductivity in a noncentrosymmetric Rashba semiconductor"

description: Electrical resistivity measurements taken in low-temperature cryostats. $$ \ $$ Abstract of associated paper in Physical Review B: We report nonequilibrium magnetodynamics in the Rashba-superconductor GeTe, which lacks inversion symmetry in the bulk. We find that at low temperature the system exhibits a nonequilibrium state, which decays on timescales that exceed conventional electronic scattering times by many orders of magnitude. This reveals a nonequilibrium magnetoresponse that is asymmetric under magnetic-field reversal and, strikingly, induces a nonequilibrium superconducting state distinct from the equilibrium one. We develop a model of a Rashba system in which nonequilibrium configurations relax on a finite timescale that captures the qualitative features of the data. We also obtain evidence for the slow dynamics in another nonsuperconducting Rashba system. Our work provides insights into the dynamics of noncentrosymmetric superconductors and Rashba systems in general.
DOI: 10.6084/m9.figshare.c.3605501_d3.v1
title: MOESM3 of Defining rules of CD8+ T cell expansion against pre-erythrocytic Plasmodium antigens in sporozoite-immunized mice

description: Additional file 3. Title: Common peptides from syntenic orthologues of P. yoelii 17XNL and P. berghei ANKA. This file provides multiple worksheets listing â Ľ8 amino acid contiguous stretches of homology for P. yoelii 17XNL/P. berghei ANKA syntenic orthologue pairs for all lifecycle stages, sporozoite stage and liver stage proteins.
DOI: 10.17863/cam.104411
title: Research Data supporting "Deprivation-induced plasticity in the early central circuits of the rodent visual, auditory, and olfactory systems"

description: Excel file containing results of a systematic review and literature meta-analysis on sensory deprivation in rodents
DOI: 10.23668/psycharchives.4188
title: Dataset for: Musical intervention for the sustainable integration and cultural participation of refugee children and adolescents (Musikalische Intervention für eine nachhaltige Eingliederung und kulturelle Teilhabe geflüchteter Kinder und Heranwachsende; MINUTE)

description: These are the data of the BMBF-funded project "Musical intervention for the sustainable integration and cultural participation of refugee children and adolescents" (MINUTE). The data are the raw data. Enclosed you will find the codebook for the individual variables.
DOI: 10.6084/m9.figshare.c.3605477_d6.v1
title: Additional file 6: of Comparative analysis of Wnt expression identifies a highly conserved developmental transition in flatworms

description: List of genes studied in this work. The GeneDB codes ( www.genedb.org ) of E. multilocularis and H. microstoma gene models are given, together with the primer sequences used for transcript amplification by RT-PCR. (XLSX 12 kb)
DOI: 10.17863/cam.26222
title: Digital Preservation Maturity, Resourcing, Policy and Strategy Survey (2018) - Selected Anonymised Raw Data

description: The Digital Preservation at Oxford and Cambridge (DPOC) project and the Digital Preservation Coalition (DPC) developed a survey aimed at gathering basic data about digital preservation activities in organisations. The survey was run from April to May 2018 and gathered information about digital preservation maturity levels, staffing resources, and the policy and strategy landscapes of institutions currently doing or considering digital preservation activities. This is the raw anonymised dataset associated with this survey. For further information on the DPOC project, see: http://www.dpoc.ac.uk/
DOI: 10.23668/psycharchives.4189
title: Dataset for "Psychological Risk Factors for Depression in UK Student and General Populations: Derailment, Self-Criticism and Self-Reassurance"

description: This study investigated the psychological factors of derailment, self-criticism and self-reassurance, previously demonstrated to influence depression, aiming to identify individual differences within and between the UK student and general population indicating those at higher risk. Participants completed self-report construct measures. Correlation and path analyses were used to assess relationships and test direction. Derailment and self-criticism predicted depression increase, whereas self-reassurance protected against depression. Self-criticism mediated derailment’s effect on depression. Self-reassurance moderated derailment’s effect on depression, though did not moderate the effect of derailment induced self-criticism on depression. Students were at higher risk of derailment and consequent depression. Depression treatment should therefore counter derailment, since derailment indicates a risk of depression through increased self-criticism or low self-reassurance, particularly in students.
description: Dataset for: Colman, R. D., Vione, K. C., & Kotera, Y. (2022). Psychological risk factors for depression in the UK general population: derailment, self-criticism and self-reassurance. British Journal of Guidance & Counselling. https://doi.org/10.1080/03069885.2022.2110214
DOI: 10.6084/m9.figshare.c.3605630_d3.v1
title: Additional file 4: of In vivo gene expression in a Staphylococcus aureus prosthetic joint infection characterized by RNA sequencing and metabolomics: a pilot study

description: Complete list of differentially expressed genes computed using EdgeR. FC: fold change; CPM: count per million; FDR: false discovery rate. (XLSX 84 kb)
DOI: 10.6084/m9.figshare.c.3605654_d1.v1
title: Additional file 1: of The effect of motherâ  s educational status on early initiation of breastfeeding: further analysis of three consecutive Nepal Demographic and Health Surveys

description: Detail results of the hierarchical modeling using logistic regression. (XLSX 35 kb)
DOI: 10.17863/cam.104059
title: Research data supporting "Mimicking transmural helical cardiomyofibre orientation using Bouligand-like pore structures in ice-templated collagen scaffolds"

description: This data set contains experimental and simulation data for the manuscript. This includes coordinates of simulated ice freezing front and pore orientation distribution by μCT analysis. Both the raw data points and Python scripts for data analysis are provided.
DOI: 10.17863/cam.96495
title: Research data supporting "Optimisation of stacked, bulk high temperature superconductors for trapped-field magnet applications"

description: The dataset of Figure 4(1), 4(2), 4(3), 4(4), 4(5) and 4(6) contains the raw data of the trapped measurement correspondent to Figure 4(1), 4(2), 4(3), 4(4), 4(5) and 4(6). The trapped fields were measured using a rotating array consisting of 18 Hall probes at 1.5 mm above the surface of the sample. The fields signals were sent and recorded by Origin 8.5 (or later version), then the Origin generates contour maps for indicating the distribution of the fields. In this study, we use the contour maps to present the uniformity of the trapped fields. The dataset of Figure 8 thickness3.5 and Figure 8 thickness1.5 contains the raw data of the modelling results presented using Origin in Figure 8(a) and (b) where the thickness of the sample with Jc-B(1) is 1.5 mm & Jc-B(2) is 8.5 mm and the thickness of the sample with Jc-B(1) is 3.5 mm & Jc-B(2) is 6.5 mm respectively. The datasets of Figure 9, figure 10 and Figure 11 contain the raw data of the modelling results. Origin 8.5 (or later version) was used to draw the curves in Figure 9, figure 10 and Figure 11.
DOI: 10.6084/m9.figshare.c.3605759_d3.v1
title: Additional file 10: Table S8. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: Association of gene expression with RFI phenotype. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3605759_d4.v1
title: Additional file 2: Table S2. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: Primers used to validate differentially expressed genes by RT-qPCR. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3605759_d5.v1
title: Additional file 3: Table S3. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: Statistical summary of raw, trimmed, mapped and residual globin reads. (XLSX 17 kb)
DOI: 10.17863/cam.76523
title: Dataset for: First-in-human pilot study of snapshot multispectral endoscopy for early detection of Barrett's-related neoplasia.

description: Research data and code arising from a first-in-human endoscopy clinical trial (NCT03388047). Each of the data tables contains 9-point multispectral image spectra created from multispectral images captured using a snapshot multispectral endoscope. The raw images were processed into these image spectra using the code in ‘PROCESSING CODE’. Raw image data can be provided upon request. The tissue spectra were captured in a first-in-human pilot study in the oesophagus. The colour spectra were captured from an X-rite colour target. Each row of the arrays contains the information about the spectra, most importantly, the labels from pathology. The different arrays contain spectra from averages over each multispectral image (processed_tissue_spectra.mat), each patient (processed_tissue_spectra_avg_per_trial.mat and processed_tissue_spectra_avg_per_trial_per_region_then_pooled.mat), and over all patients (processed_tissue_spectra_avg_overall.mat). Please see included readme files for further details.
DOI: 10.6084/m9.figshare.c.3605759_d7.v1
title: Additional file 13: Table S11. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: Association of module eigengenes with RFI phenotype. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3605780_d1.v1
title: Additional file 1:  of Rapid-Onset Obesity with Hypothalamic Dysfunction, Hypoventilation, and Autonomic Dysregulation (ROHHAD): exome sequencing of trios, monozygotic twins and tumours

description: Low-coverage proportions of candidate genes in replication exomes. (XLSX 43 kb)
DOI: 10.17863/cam.72394
title: Dataset for "Lessons on textile history and fibre durability from a 4,000-year-old Egyptian flax yarn"

description: Datasets have been organised based on the various experimental techniques (e.g. AFM, IRTF/FTIR, Nanoindentation, SEM, SHG, Tomography, XRD) and analytical methods employed to study the ancient Egyptian (old or Louvre samples) and conventional (modern or Ecotechnilin or Lin samples). In all cases (except for micro-CT tomography) both raw and processed data has been provided. For micro-CT tomography data only processed data has been provided; raw data may be requested from corresponding author upon reasonable request.
DOI: 10.6084/m9.figshare.c.3605759_d8.v1
title: Additional file 9: Table S7. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: Validation of differentially expressed genes by RT-qPCR assays. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3605759_d9.v1
title: Additional file 11: Table S9. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: Differentially expressed WGCNA modules between the RFI groups. (XLSX 307 kb)
DOI: 10.6084/m9.figshare.c.3605759_d10.v1
title: Additional file 4: Table S4. of Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

description: Differentially expressed genes identified by RNA-seq. (XLSX 5306 kb)
DOI: 10.6084/m9.figshare.c.3605780_d2.v1
title: Additional file 2:  of Rapid-Onset Obesity with Hypothalamic Dysfunction, Hypoventilation, and Autonomic Dysregulation (ROHHAD): exome sequencing of trios, monozygotic twins and tumours

description: Genes carrying putative candidate mutations in 2 of 7 ROHHAD probands in the discovery cohort. (XLSX 44 kb)
DOI: 10.5281/zenodo.14281267
title: Deep learning image analysis for continuous single-cell imaging of dynamic processes in Plasmodium falciparum-infected erythrocytes

description: The accompanying code base can be found at https://github.com/sciai-lab/CP_RBC_Pfalciparum. Please download the data, unzip it and place it in the directory data of the repository. 

 Details

parasite_labelled contains the raw data and ground truth segmentations for individual 3D stacks of ring-stage (mask-r) and trophozoite/schizont (mask-ts) parasites. rbc_labelled contains the raw data and ground truth segmentations for individual 3D stacks for the erythrocytes. The corresponding results subdirectories contain the predicted segmentations and evaluation metrics of the 10-fold cross-validation. These datasets were used for training and cross-validating the cellpose models

wholelife_unlabelled contains raw data and predicted segmentations for whole life cycle recordings (3D stacks across time).
DOI: 10.6084/m9.figshare.c.3605789_d2.v1
title: Additional file 2 of MISSEL: a method to identify a large number of small species-specific genomic subsequences and its application to viruses classification

description: This supplementary data package includes the experimental results of MISSEL. In particular, the reader may find three folders.
DOI: 10.6084/m9.figshare.c.3605951_d1.v1
title: Additional file 1: Table S1. of Genome sequence of the clover symbiont Rhizobium leguminosarum bv. trifolii strain CC275e

description: List of strain names and associated NCBI GenBank accession numbers for bacterial isolates in Fig. 2. (XLSX 13 kb)
DOI: 10.17863/cam.101792
title: Research Data supporting "Thermodynamic signatures for hexapeptides with propensity for phase separation and amyloid formation"

description: These databases are analysed in the PhD thesis of the author and a subset of these databases are also analysed in various papers (DOI links included below). These discrete path sampling databases are created using GMIN, OPTIM, and PATHSAMPLE interfaced with AMBER and LAMMPS software packages. The Mpipi potential implemented in LAMMPS software has been used to explore energy landscapes of some oligomers.
DOI: 10.6084/m9.figshare.c.3605978_d1.v1
title: Additional file 15: Figure S7. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype

description: Amino acid sequences (fasta format) of P450s from B. tabaci transcriptome with available protein sequences from other insect species included in the phylogeny (Additional file 13: Figure S6). (FAS 223 kb)
DOI: 10.6084/m9.figshare.c.3605978_d2.v1
title: Additional file 5: Figure S2. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype

description: Amino acid alignment of nAChR subunits from B. tabaci transcriptome with available protein sequences from 7 insect species. List of species in the alignment: D. Melanogaster (Dmel), A. mellifera (Amel), T. castaneum (Tcas), A. gambiae (Agamb), B. mori (Bmori), A. pisum (Apisum), B. tabaci (Btab). (Examination of this file requires the BioEdit program ( http://www.mbio.ncsu.edu/bioedit/bioedit.html )). (ALI 135 kb)
DOI: 10.17863/cam.30558
title: Research data supporting "Improving the photoluminescence quantum yields of quantum dot films through a donor/acceptor system for near-IR LEDs"

description: Data underlying each Figure in the paper, namely absorption spectra, emission spectra, transient absorption data and LED characteristics for mixed quantum dot films.
DOI: 10.6084/m9.figshare.c.3605966_d15.v1
title: Additional file 5: of Cultivation of stable, reproducible microbial communities from different fecal donors using minibioreactor arrays (MBRAs)

description: Relative abundance of all MBRA core OTUs across stable reactors (days 8–21; mean ± SD). Table providing the mean relative abundance of OTUs present in the core communities of MBRAs of all different fecal types examined.
DOI: 10.6084/m9.figshare.c.3606032_d3.v1
title: Additional file 13: Table S9. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Comparison of polarized gene expression in regeneration between Nematostella and Planaria. The anterior and posterior enriched genes of Planaria are listed with their oral or aboral Nematostella orthologs and homologs when present. The color coding is the same as in Fig.Â 7. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3606038_d1.v1
title: Additional file 4 of Molecular characterization of Gleason patterns 3 and 4 prostate cancer using reverse Warburg effect-associated genes

description: NanoString probe sequences. Table S4. NanoSNanoStringtring probe sequences. (XLSX 42.1 kb)
DOI: 10.6084/m9.figshare.c.3606032_d4.v1
title: Additional file 6: Figure S3. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Time course graphs of metalloproteinase (MP) group genes and inhibitors. The FDR-adjusted p-values for the time effect (DESeq GLMs) for all genes are given. (XLSX 23Â kb)