cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hvf8fj
title: Occurrence Download

description: A dataset containing 192311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Turdus torquatus Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 192311 records from 528 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096889-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24194544
title: A Nucleolar Protein, MoRRP8 Is Required for Development and Pathogenicity in the Rice Blast Fungus

description: The nucleolus is the largest, membrane-less organelle within the nucleus of eukaryotic cell that plays a critical role in rRNA transcription and assembly of ribosomes. Recently, the nucleolus has been shown to be implicated in an array of processes including the formation of signal recognition particles and response to cellular stress. Such diverse functions of nucleolus are mediated by nucleolar proteins. In this study, we characterized a gene coding a putative protein containing a nucleolar localization sequence (NoLS) in the rice blast fungus, <i>Magnaporthe oryzae</i>. Phylogenetic and domain analysis suggested that the protein is orthologous to Rrp8 in <i>Saccharomyces cerevisiae</i>. MoRRP8-GFP (translational fusion of MoRRP8 with green fluorescence protein) co-localizes with a nucleolar marker protein, MoNOP1 fused to red fluorescence protein (RFP), indicating that MoRRP8 is a nucleolar protein. Deletion of the <i>MoRRP8</i> gene caused a reduction in vegetative growth and impinged largely on asexual sporulation. Although the asexual spores of Δ<i>Morrp8</i> were morphologically indistinguishable from those of wild-type, they showed delay in germination and reduction in appressorium formation. Our pathogenicity assay revealed that the <i>MoRRP8</i> is required for full virulence and growth within host plants. Taken together, these results suggest that nucleolar processes mediated by MoRRP8 is pivotal for fungal development and pathogenesis.
DOI: 10.6084/m9.figshare.24194544.v1
title: A Nucleolar Protein, MoRRP8 Is Required for Development and Pathogenicity in the Rice Blast Fungus

description: The nucleolus is the largest, membrane-less organelle within the nucleus of eukaryotic cell that plays a critical role in rRNA transcription and assembly of ribosomes. Recently, the nucleolus has been shown to be implicated in an array of processes including the formation of signal recognition particles and response to cellular stress. Such diverse functions of nucleolus are mediated by nucleolar proteins. In this study, we characterized a gene coding a putative protein containing a nucleolar localization sequence (NoLS) in the rice blast fungus, <i>Magnaporthe oryzae</i>. Phylogenetic and domain analysis suggested that the protein is orthologous to Rrp8 in <i>Saccharomyces cerevisiae</i>. MoRRP8-GFP (translational fusion of MoRRP8 with green fluorescence protein) co-localizes with a nucleolar marker protein, MoNOP1 fused to red fluorescence protein (RFP), indicating that MoRRP8 is a nucleolar protein. Deletion of the <i>MoRRP8</i> gene caused a reduction in vegetative growth and impinged largely on asexual sporulation. Although the asexual spores of Δ<i>Morrp8</i> were morphologically indistinguishable from those of wild-type, they showed delay in germination and reduction in appressorium formation. Our pathogenicity assay revealed that the <i>MoRRP8</i> is required for full virulence and growth within host plants. Taken together, these results suggest that nucleolar processes mediated by MoRRP8 is pivotal for fungal development and pathogenesis.
DOI: 10.6084/m9.figshare.22619156.v1
title: Additional file 5 of Macrophage-specific autophagy-related gene HSPB8 is involved in the macrophage polarization in atherosclerosis

description: Additional File: Table S5: The expression difference of 10 MARGs between AS and normal samples
DOI: 10.6084/m9.figshare.22619140.v1
title: Additional file 1 of Characterization of a novel papillomavirus identified from a whale (Delphinapterus leucas) pharyngeal metagenomic library

description: Supplementary Table 1. Summary of information for a whale pharyngeal metagenomic library.
DOI: 10.6084/m9.figshare.7414817
title: Additional file 3: of Genome-wide identification and localization of chalcone synthase family in soybean (Glycine max [L]Merr)

description: List of 40,972 duplicated gene pairs in Glycine max genome (XLSX 2404 kb)
DOI: 10.6084/m9.figshare.22617857
title: Additional file 5 of Protective effects of Qing-Re-Huo-Xue formula on bleomycin-induced pulmonary fibrosis through the p53/IGFBP3 pathway

description: Additional file 5: Table S2: Screening results of the differentially expressed proteins.
DOI: 10.6084/m9.figshare.22619099.v1
title: Additional file 1 of Genome-wide identification of the TIFY family reveals JAZ subfamily function in response to hormone treatment in Betula platyphylla

description: Additional file 1.
DOI: 10.6084/m9.figshare.22619144.v1
title: Additional file 1 of Macrophage-specific autophagy-related gene HSPB8 is involved in the macrophage polarization in atherosclerosis

description: Additional File: Table S1: The autophagy related genes downloaded from Human Autophagy database
DOI: 10.6084/m9.figshare.22619105
title: Additional file 3 of Genome-wide identification of the TIFY family reveals JAZ subfamily function in response to hormone treatment in Betula platyphylla

description: Additional file 3.
DOI: 10.6084/m9.figshare.22619153
title: Additional file 4 of Macrophage-specific autophagy-related gene HSPB8 is involved in the macrophage polarization in atherosclerosis

description: Additional File: Table S4: All significantly enriched GO terms
DOI: 10.6084/m9.figshare.22619153.v1
title: Additional file 4 of Macrophage-specific autophagy-related gene HSPB8 is involved in the macrophage polarization in atherosclerosis

description: Additional File: Table S4: All significantly enriched GO terms
DOI: 10.6084/m9.figshare.7414847
title: Additional file 5: of Genome-wide identification and localization of chalcone synthase family in soybean (Glycine max [L]Merr)

description: GmCHS transcript abundance in soybean tissues. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.22619143
title: Additional file 2 of Characterization of a novel papillomavirus identified from a whale (Delphinapterus leucas) pharyngeal metagenomic library

description: Supplementary Table 2. Supplementary information for distance matrix analysis of wPV.
DOI: 10.6084/m9.figshare.7414985.v1
title: Additional file 1: of Murine exposure to gold nanoparticles during early pregnancy promotes abortion by inhibiting ectodermal differentiation

description: Figure S1. Synthesis and characterization of gold nanoparticles A30. (A) Schematic illustration of an A30 nanoparticle. (B) A30 suspension in ddH2O. (C) TEM image showing the morphology of A30. Figure S2. The representative images of aborted and non-aborted uteri after A30 administration. (A) non-aborted uterus. (B) aborted uterus and (C, D) abnormal development uterus. Arrows indicate abortion site with no content, arrowheads indicate stillbirth with turbid red or black contents in the uterus “bead”. Scale bar is 1 cm. Figure S3. Ammonium sulfide staining of the uterus without embryo. The left tissue comes from the A30E group, and the right tissue comes from the A30L group. Arrow shows the implantation sites in the uterus without embryo after ammonium sulfide staining. Figure S4. Morphology of the placentas and fetuses in non-aborted mice of NP and A30-exposed groups. The left column is the whole uterus of E16.5 mice, including fetuses. The right column is the dissected fetus and placenta. (RTF 16451 kb)
DOI: 10.6084/m9.figshare.12660467
title: Pedestrian network attributes-- Datasets

description: Title: Attributing pedestrian networks with
semantic information based on multi-source spatial dataAbstract: The
lack of associating pedestrian networks, i.e., the paths and roads used for
non-vehicular travel, with information about semantic attribution is a major weakness
for many applications, especially those supporting accurate pedestrian routing.
Researchers have developed various algorithms to generate pedestrian walkways
based on datasets, including high-resolution images, existing map databases,
and GPS data; however, the semantic attribution of pedestrian walkways is often
ignored. The objective of our study is to automatically extract semantic
information including incline values and the different categories of pedestrian
paths from multi-source spatial data, such as crowdsourced GPS tracking data, land
use data, and motor vehicle road (MVR) networks. Incline values for each
pedestrian path were derived from tracking data through elevation filtering
using wavelet theory and a similarity-based map-matching method. To
automatically categorize pedestrian paths into five classes including sidewalk,
crosswalk, entrance<i> </i>walkway, indoor path<i>,</i> and greenway, we
developed a hierarchical strategy of spatial analysis using land use data and
MVR networks. The effectiveness of our proposed method is demonstrated using
real datasets including GPS tracking data collected by volunteers, land use
data acquired from OpenStreetMap, and MVR network data downloaded from Gaode
Map.
DOI: 10.6084/m9.figshare.10039052
title: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross
DOI: 10.6084/m9.figshare.10039052.v1
title: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross
DOI: 10.6084/m9.figshare.10039055
title: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross
DOI: 10.6084/m9.figshare.10039055.v1
title: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross
DOI: 10.6084/m9.figshare.10039058
title: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross
DOI: 10.6084/m9.figshare.10039058.v1
title: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross
DOI: 10.6084/m9.figshare.10039076
title: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross
DOI: 10.6084/m9.figshare.10039076.v1
title: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross
DOI: 10.6084/m9.figshare.10039082
title: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross
DOI: 10.6084/m9.figshare.10039082.v1
title: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross
DOI: 10.6084/m9.figshare.10039091
title: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross
DOI: 10.6084/m9.figshare.10039091.v1
title: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: of High recombination rates and hotspots in a Plasmodium falciparum genetic cross
DOI: 10.6084/m9.figshare.10039106
title: MOESM11 of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: Additional file 11: Length, recombination rate, chromosome location, and AT content of DNA sequences in the recombination hotspots of the 7G8 Ă GB4 and Dd2 Ă HB3 genetic crosses. (XLSX 33 KB)
DOI: 10.6084/m9.figshare.10039106.v1
title: MOESM11 of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: Additional file 11: Length, recombination rate, chromosome location, and AT content of DNA sequences in the recombination hotspots of the 7G8 Ă GB4 and Dd2 Ă HB3 genetic crosses. (XLSX 33 KB)
DOI: 10.6084/m9.figshare.10039109
title: MOESM12 of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: Additional file 12: Significantly enriched Gene Ontology terms (genes) in the recombination hotspots. (XLSX 13 KB)
DOI: 10.6084/m9.figshare.10039109.v1
title: MOESM12 of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: Additional file 12: Significantly enriched Gene Ontology terms (genes) in the recombination hotspots. (XLSX 13 KB)
DOI: 10.6084/m9.figshare.10039112
title: MOESM13 of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: Additional file 13: Putative motifs enriched in hotspots and their occurrence frequencies (counts/kb). (XLSX 44 KB)
DOI: 10.6084/m9.figshare.10039112.v1
title: MOESM13 of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: Additional file 13: Putative motifs enriched in hotspots and their occurrence frequencies (counts/kb). (XLSX 44 KB)
DOI: 10.6084/m9.figshare.7414985
title: Additional file 1: of Murine exposure to gold nanoparticles during early pregnancy promotes abortion by inhibiting ectodermal differentiation

description: Figure S1. Synthesis and characterization of gold nanoparticles A30. (A) Schematic illustration of an A30 nanoparticle. (B) A30 suspension in ddH2O. (C) TEM image showing the morphology of A30. Figure S2. The representative images of aborted and non-aborted uteri after A30 administration. (A) non-aborted uterus. (B) aborted uterus and (C, D) abnormal development uterus. Arrows indicate abortion site with no content, arrowheads indicate stillbirth with turbid red or black contents in the uterus “bead”. Scale bar is 1 cm. Figure S3. Ammonium sulfide staining of the uterus without embryo. The left tissue comes from the A30E group, and the right tissue comes from the A30L group. Arrow shows the implantation sites in the uterus without embryo after ammonium sulfide staining. Figure S4. Morphology of the placentas and fetuses in non-aborted mice of NP and A30-exposed groups. The left column is the whole uterus of E16.5 mice, including fetuses. The right column is the dissected fetus and placenta. (RTF 16451 kb)
DOI: 10.6084/m9.figshare.10039130
title: MOESM1 of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: Additional file 1: Copy number variations (segmentation means) between 7G8 and GB4 relative to 3D7. (XLSX 60 KB)
DOI: 10.6084/m9.figshare.10039130.v1
title: MOESM1 of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: Additional file 1: Copy number variations (segmentation means) between 7G8 and GB4 relative to 3D7. (XLSX 60 KB)
DOI: 10.6084/m9.figshare.22618004.v1
title: Additional file 12 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 12: Table S6. Three types of genes associated with IREs in zebrafish and mice.
DOI: 10.6084/m9.figshare.22618060.v1
title: Additional file 4 of Comprehensive analysis of the laccase gene family in tea plant highlights its roles in development and stress responses

description: Additional file 4: Table S4. Primer pairs for 18 SSR markers and 45 tea plant samples used for SSR marker development.
DOI: 10.6084/m9.figshare.8987927.v1
title: Fabrication of Fe-2.1 wt.% Si Alloy Sheets with Dominant Goss Texture Through Thickness

description: Macro- and micro-texture of Fe-2.1 wt.% Si alloy sheets were investigated and analyzed by X-ray diffraction and electron backscattered diffraction techniques. A Goss ({110}&lt;001&gt;) component accompanied by extremely weak γ (&lt;111&gt;//ND, normal direction) fiber is successfully formed through the sheet thickness after primary recrystallization and considerable grain growth. Goss grains mainly nucleate at shear bands in various deformed matrices with orientations spreading from &lt;112&gt;//ND to &lt;332&gt;//ND fibers. The formation of dominant Goss recrystallization texture through the thickness can be attributed to the suppression of the nucleation at grain boundaries of γ deformed matrices and the promotion of the nucleation at shear bands in various deformed matrices, based on optimization of the initial texture and microstructure and the applied processing parameters.
DOI: 10.6084/m9.figshare.10039136
title: MOESM3 of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: Additional file 3: Genotypes, marker distances, centromere positions, and inheritance of mSFPs and 254 MSs among 32 independent recombinant progeny from the 7G8 Ă GB4 cross [9]. (XLSX 603 KB)
DOI: 10.6084/m9.figshare.10039136.v1
title: MOESM3 of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: Additional file 3: Genotypes, marker distances, centromere positions, and inheritance of mSFPs and 254 MSs among 32 independent recombinant progeny from the 7G8 Ă GB4 cross [9]. (XLSX 603 KB)
DOI: 10.6084/m9.figshare.10039145
title: MOESM6 of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: Additional file 6: Genotypes, marker distances, centromere positions, and inheritance of microsatellite markers among 35 progeny from the Dd2 Ă HB3 cross. (XLSX 229 KB)
DOI: 10.6084/m9.figshare.10039145.v1
title: MOESM6 of High recombination rates and hotspots in a Plasmodium falciparum genetic cross

description: Additional file 6: Genotypes, marker distances, centromere positions, and inheritance of microsatellite markers among 35 progeny from the Dd2 Ă HB3 cross. (XLSX 229 KB)
DOI: 10.6084/m9.figshare.20000621
title: DrDED original data

description: 1. A dataset on literature on risk factors for dry eye disease (DrDED).
2. The current DrDED contains 44 studies published between 2000 and 2021. 
3. The datasheet includes publication information, study characteristics, definition and prevalence of disease of eligible studies.
4. The datasheet contains all risk factors for DED together with their strengths of association.
DOI: 10.6084/m9.figshare.20000624
title: origianl studies

description: 1. All studies first screened
2. All excluded studies with reasons
3. Round 1 screening with reasons
4. Round 2 screening with reasons
DOI: 10.6084/m9.figshare.20000624.v1
title: origianl studies

description: 1. All studies first screened
2. All excluded studies with reasons
3. Round 1 screening with reasons
4. Round 2 screening with reasons
DOI: 10.6084/m9.figshare.8987927
title: Fabrication of Fe-2.1 wt.% Si Alloy Sheets with Dominant Goss Texture Through Thickness

description: Macro- and micro-texture of Fe-2.1 wt.% Si alloy sheets were investigated and analyzed by X-ray diffraction and electron backscattered diffraction techniques. A Goss ({110}&lt;001&gt;) component accompanied by extremely weak γ (&lt;111&gt;//ND, normal direction) fiber is successfully formed through the sheet thickness after primary recrystallization and considerable grain growth. Goss grains mainly nucleate at shear bands in various deformed matrices with orientations spreading from &lt;112&gt;//ND to &lt;332&gt;//ND fibers. The formation of dominant Goss recrystallization texture through the thickness can be attributed to the suppression of the nucleation at grain boundaries of γ deformed matrices and the promotion of the nucleation at shear bands in various deformed matrices, based on optimization of the initial texture and microstructure and the applied processing parameters.
DOI: 10.6084/m9.figshare.17903738
title: In-situ Transfer Vat Photopolymerization for Transparent Microfluidic Device Fabrication

description: Data is formatted as per Nature Communications requirements, i.e., a single Microsoft Excel file with data for each figure in individual sheets.
DOI: 10.6084/m9.figshare.22619416
title: Additional file 2 of Reading and writing of mRNA m6A modification orchestrate maternal-to-zygotic transition in mice

description: Additional file 2: Table S1. The processed SLIM-seq, RNA-seq and proteomics data.
DOI: 10.6084/m9.figshare.22619416.v1
title: Additional file 2 of Reading and writing of mRNA m6A modification orchestrate maternal-to-zygotic transition in mice

description: Additional file 2: Table S1. The processed SLIM-seq, RNA-seq and proteomics data.
DOI: 10.6084/m9.figshare.22619419
title: Additional file 3 of Reading and writing of mRNA m6A modification orchestrate maternal-to-zygotic transition in mice

description: Additional file 3: Table S2. Defined gene list, sgRNA sequence, crRNA sequence and primer sequence used for qRT-PCR.
DOI: 10.6084/m9.figshare.13182289.v1
title: Preventing <i>Candida albicans</i> from subverting host plasminogen for invasive infection treatment

description: <i>Candida albicans</i> is a common fungal pathogen in humans that colonizes the skin and mucosal surfaces of the majority healthy individuals. How <i>C. albicans</i> disseminates into the bloodstream and causes life-threatening systemic infections in immunocompromised patients remains unclear. Plasminogen system activation can degrade a variety of structural proteins <i>in vivo</i> and is involved in several homeostatic processes. Here, for the first time, we characterized that <i>C. albicans</i> could capture and “subvert” host plasminogen to invade host epithelial cell surface barriers through cell-wall localized Eno1 protein. We found that the “subverted” plasminogen system plays an important role in development of invasive infection caused by <i>C. albicans</i> in mice. Base on this finding, we discovered a mouse monoclonal antibody (mAb) 12D9 targeting <i>C. albicans</i> Eno1, with high affinity to the <sub>254</sub>FYKDGKYDL<sub>262</sub> motif in α-helices 6, β-sheet 6 (H6S6) loop and direct blocking activity for <i>C. albicans</i> capture host plasminogen. mAb 12D9 could prevent <i>C. albicans</i> from invading human epithelial and endothelial cells, and displayed antifungal activity and synergistic effect with anidulafungin or fluconazole in proof-of-concept <i>in vivo</i> studies, suggesting that blocking the function of cell surface Eno1 was effective for controlling invasive infection caused by <i>Candida</i> spp. In summary, our study provides the evidence of <i>C. albicans</i> invading host by “subverting” plasminogen system, suggesting a potential novel treatment strategy for invasive fungal infections.
DOI: 10.6084/m9.figshare.22619419.v1
title: Additional file 3 of Reading and writing of mRNA m6A modification orchestrate maternal-to-zygotic transition in mice

description: Additional file 3: Table S2. Defined gene list, sgRNA sequence, crRNA sequence and primer sequence used for qRT-PCR.
DOI: 10.6084/m9.figshare.22617989
title: Additional file 7 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 7: Table S1. Coordinates of IREs and non-IREs in neonatal P1 mouse hearts.