cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/104183
title: INS (Inertial Navigation System) data collected during research cruise WS1006 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104194
title: Winch data collected during research cruise WS1006 using a General Oceanics DT1020 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7157150
title: Oviduct-on-a-chip RNAseq data for cells and zygotes

description: Two files providing RPM counts of:<br>1. RNAseq of cow oviductal cells cultured in the oviduct-on-a-chip after different hormonal stimulations (n=3 samples per treatment; BOECE1-3: pre-ovulatory phase; BOECNH1-3: no hormonal stimulation; and BOECP1-3: luteal phase)<br>2. RNAseq of cow zygotes produced in vitro, in the oviduct-on-a-chip and collected in vivo (n=10 analysis of single zygotes per group; ZYCH1-10: <i>on chip</i> zygotes, ZYVT1-10: <i>in vitro</i> zygotes; and ZYVV1-10: <i>in vivo</i> zygotes)
DOI: 10.7284/104200
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1007 using a RDI BB-600 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7157141
title: Domain geometry and bathymetry of Mediterranean Sea domain.

description: Domain geometry (shorelines and 'open' boundaries) and bathymetry of Mediterranean Sea domain. Intended for qmesh tutorials.
DOI: 10.7284/104201
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1007 using a RDI OS-75 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7157141.v1
title: Domain geometry and bathymetry of Mediterranean Sea domain.

description: Domain geometry (shorelines and 'open' boundaries) and bathymetry of Mediterranean Sea domain. Intended for qmesh tutorials.
DOI: 10.7284/104199
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise WS1007 using a Sea-Bird SBE-911+ instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7156997
title: Supplementary Material for: Resistance to Fas-Mediated Apoptosis Does Not Correlate to Structural Alterations or Expression Changes of the Death Receptor in Papillary Thyroid Carcinomas

description: <b><i>Background:</i></b> Malignant cells exhibit significant resistance to FAS-mediated cell death, through different processes, including <i>FAS</i> mutations, soluble <i>FAS</i> expression, or FAS transcriptional dysregulation by P53, eventually escaping from immune surveillance. Since thyroid carcinomas were shown to be resistant to FAS-mediated apoptosis, we investigated the above mechanisms in thyroid carcinoma samples. <b><i>Methods:</i></b> Thirty-seven thyroid carcinoma samples were analyzed for mutations in <i>FAS</i> exon 9 and <i>TP53</i> exons 5–8 and protein expression by means of immunohistochemistry. Moreover, thyroid carcinoma mRNA samples were subjected to reverse transcription – PCR, to evaluate the relative expression of transmembrane FAS versus its soluble form. <b><i>Results:</i></b> Analysis revealed indications for <i>TP53</i> mutations in the anaplastic carcinomas, but not in the other thyroid specimens examined for <i>TP53</i> or <i>FAS</i> exon 9 mutations. FAS receptor expression was observed in almost all thyroid specimens (97%) with significant up-regulation in papillary carcinomas. P53 nuclear staining was observed only in anaplastic carcinomas. Full-length <i>FAS</i> mRNA was detected in all specimens examined, with soluble <i>FAS</i> mRNA being either absent or present in very low amounts. <b><i>Conclusions:</i></b> Our results denote that <i>FAS</i> death domain or <i>TP53</i> DNA-binding domain mutations, down-regulation of FAS receptor expression, or expression of <i>FAS</i> soluble isoform are not responsible for the seeming inhibition of FAS-mediated apoptosis in papillary thyroid carcinoma cells.
DOI: 10.7284/104202
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1007 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7156997.v1
title: Supplementary Material for: Resistance to Fas-Mediated Apoptosis Does Not Correlate to Structural Alterations or Expression Changes of the Death Receptor in Papillary Thyroid Carcinomas

description: <b><i>Background:</i></b> Malignant cells exhibit significant resistance to FAS-mediated cell death, through different processes, including <i>FAS</i> mutations, soluble <i>FAS</i> expression, or FAS transcriptional dysregulation by P53, eventually escaping from immune surveillance. Since thyroid carcinomas were shown to be resistant to FAS-mediated apoptosis, we investigated the above mechanisms in thyroid carcinoma samples. <b><i>Methods:</i></b> Thirty-seven thyroid carcinoma samples were analyzed for mutations in <i>FAS</i> exon 9 and <i>TP53</i> exons 5–8 and protein expression by means of immunohistochemistry. Moreover, thyroid carcinoma mRNA samples were subjected to reverse transcription – PCR, to evaluate the relative expression of transmembrane FAS versus its soluble form. <b><i>Results:</i></b> Analysis revealed indications for <i>TP53</i> mutations in the anaplastic carcinomas, but not in the other thyroid specimens examined for <i>TP53</i> or <i>FAS</i> exon 9 mutations. FAS receptor expression was observed in almost all thyroid specimens (97%) with significant up-regulation in papillary carcinomas. P53 nuclear staining was observed only in anaplastic carcinomas. Full-length <i>FAS</i> mRNA was detected in all specimens examined, with soluble <i>FAS</i> mRNA being either absent or present in very low amounts. <b><i>Conclusions:</i></b> Our results denote that <i>FAS</i> death domain or <i>TP53</i> DNA-binding domain mutations, down-regulation of FAS receptor expression, or expression of <i>FAS</i> soluble isoform are not responsible for the seeming inhibition of FAS-mediated apoptosis in papillary thyroid carcinoma cells.
DOI: 10.6084/m9.figshare.7156967
title: Supplementary Material for: Micropapular Cutaneous Sarcoidosis Reviewed

description: <b><i>Background:</i></b> Micropapular cutaneous sarcoidosis (MPCS) is a rare variant of sarcoidosis. Herein we review the literature and include a recent case of MPCS discussing pathogenesis, diagnosis, treatment, and prognosis. <b><i>Method:</i></b> A review was conducted using the terms “micropapular sarcoidosis” and “micropapular sarcoid.” A recent case of a 50-year-old male patient with biopsy-identified MPCS was also included in the review. <b><i>Results:</i></b> In total, 12 cases with an aggregate of 18 patients were included in the review. Presentation among all patients was consistent, with scattered, occasionally pruritic, faintly erythematous shiny white papules. Skin biopsy demonstrated noncaseating granulomas. Systemic prednisone, oxytetracycline, and hydroxychloroquine, as well as topical betamethasone, were used for therapy. <b><i>Conclusion:</i></b> In our review there does not seem to be a clear link as to the definite cause of the MPCS. While the relationships to tuberculosis and autoimmunity seem to be often emphasized, there was no clear association with either etiology.
DOI: 10.7284/104203
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1007 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7156967.v1
title: Supplementary Material for: Micropapular Cutaneous Sarcoidosis Reviewed

description: <b><i>Background:</i></b> Micropapular cutaneous sarcoidosis (MPCS) is a rare variant of sarcoidosis. Herein we review the literature and include a recent case of MPCS discussing pathogenesis, diagnosis, treatment, and prognosis. <b><i>Method:</i></b> A review was conducted using the terms “micropapular sarcoidosis” and “micropapular sarcoid.” A recent case of a 50-year-old male patient with biopsy-identified MPCS was also included in the review. <b><i>Results:</i></b> In total, 12 cases with an aggregate of 18 patients were included in the review. Presentation among all patients was consistent, with scattered, occasionally pruritic, faintly erythematous shiny white papules. Skin biopsy demonstrated noncaseating granulomas. Systemic prednisone, oxytetracycline, and hydroxychloroquine, as well as topical betamethasone, were used for therapy. <b><i>Conclusion:</i></b> In our review there does not seem to be a clear link as to the definite cause of the MPCS. While the relationships to tuberculosis and autoimmunity seem to be often emphasized, there was no clear association with either etiology.
DOI: 10.6084/m9.figshare.7156946
title: Marry Who You Love: Intergroup Contact with Gay People and Another Stigmatized Group Is Related to Voting on Gay Rights through Perception of Threat

description: This dataset and syntax were used for a study that examined factors associated with discrimination against gay people in a public referendum aimed at the restriction of gay rights.
DOI: 10.7284/104204
title: Gyrocompass data collected during research cruise WS1007 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.12886826
title: Supplementary Material for: Associations between Cell-Free Mitochondrial DNA and Inflammation, and Their Clinical Implications for Patients on Hemodialysis: A Prospective Multicenter Cohort Study

description: <b><i>Background:</i></b> Cell-free mitochondrial DNA (cf-mtDNA) has recently been in the spotlight as an endogenously produced danger molecule that can potentially elicit inflammation. However, its clinical and prognostic implications are uncertain in patients undergoing hemodialysis. <b><i>Methods:</i></b> We examined the association of baseline cf-mtDNA categorized as tertiles with health-related quality of life (HRQOL), inflammatory cytokines, and mortality in a multicenter prospective cohort of 334 patients on hemodialysis. To better understand cf-mtDNA-mediated inflammation, we measured cytokine production after in vitro stimulation of bone marrow-derived macrophages (BMDMs) with mtDNA. <b><i>Results:</i></b> The higher cf-mtDNA tertile had a longer dialysis vintage, a greater comorbidity burden, and increased levels of inflammatory markers, including high-sensitivity-C-reactive protein, tumor necrosis factor-alpha, CXCL16, and osteoprotegerin. In particular, mtDNA augmented inflammatory cytokine release from BMDMs by lipopolysaccharide, the levels of which are reported to be increased in hemodialysis patients. Although the patients with higher levels of cf-mtDNA generally had lower (poorer) scores for HRQOL, cf-mtDNA was not associated with all-cause mortality in hemodialysis patients. <b><i>Conclusion:</i></b> cf-mtDNA was correlated with poor clinical status and modestly associated with impaired quality of life in patients on hemodialysis. In proinflammatory milieu in end-stage renal disease, these associations may be attributed to the boosting effects of cf-mtDNA on inflammation.
DOI: 10.6084/m9.figshare.7156853
title: Supplementary Material for: The Munich-Transarterial Chemoembolisation Score Holds Superior Prognostic Capacities Compared to TACE-Tailored Modifications of 9 Established Staging Systems for Hepatocellular Carcinoma

description: <b><i>Background/Aims:</i></b> The recently proposed Munich-transarterial chemoembolisation-score (M-TACE) was tailored to suit hepatocellular Carcinoma (HCC) patients evaluated for TACE. M-TACE outperformed the established HCC-staging-systems and successfully passed external validation. Modifications of staging-systems through the rearrangement of stages or by adding prognostic factors are methods of improving prognostic power. M-TACEs performance compared to scores modified this way should be tested. <b><i>Methods:</i></b> Seven well-known HCC staging-systems (including Cancer of the Liver Italian Program-score [CLIP] and Barcelona Clinic liver cancer [BCLC]) and 2 TACE-specific scores (Selection for Transarterial Chemoembolisation Treatment [STATE] and Hepatoma Arterial embolisation Prognostic [HAP]) were rearranged in a cohort of 186 TACE-patients through score-point-analysis and subsequent linking of non-significant adjacent score-points. Additionally, a new score was constructed by combining the top established staging-system in TACE patients (CLIP-TACE) and the prognostic parameter with the highest hazard ratio for death in the TACE-cohort [C-reactive protein (CRP)]. Additionally, the TACE-tailored-scores were applied to an external TACE-cohort (<i>n</i> = 71). ­<b><i>Results:</i></b> Rearrangement resulted in optimal stratification and monotonicity. CLIP-TACE demonstrated the best prognostic capability of all rearranged scores (c-index 0.668, AIC 1294) and the addition of CRP yielded further prognostic improvement (c-index 0.680, AIC 1289). However, superiority over M-TACE could not be achieved by any of the new scores in the internal and external cohort. <b><i>Conclusion:</i></b> M-TACE outperforms TACE-tailored modifications of all relevant HCC-staging-systems. Prospective validation of M-TACE to promote its role as the preferred staging-system for TACE-patients is therefore justified.
DOI: 10.6084/m9.figshare.7156946.v2
title: Marry Who You Love: Intergroup Contact with Gay People and Another Stigmatized Group Is Related to Voting on Gay Rights through Perception of Threat

description: This dataset and syntax were used for a study that examined factors associated with discrimination against gay people in a public referendum aimed at the restriction of gay rights.
DOI: 10.7284/104198
title: INS (Inertial Navigation System) data collected during research cruise WS1007 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7156946.v1
title: Untitled IteMarry Who You Love: Intergroup Contact with Gay People and Another Stigmatized Minority Is Related to Voting on the Restriction of Gay Rights through Perceived Threat

description: This dataset and syntax were used for a study that examined factors associated with discrimination against gay people in a public referendum aimed at the restriction of gay rights.
DOI: 10.6084/m9.figshare.7156853.v1
title: Supplementary Material for: The Munich-Transarterial Chemoembolisation Score Holds Superior Prognostic Capacities Compared to TACE-Tailored Modifications of 9 Established Staging Systems for Hepatocellular Carcinoma

description: <b><i>Background/Aims:</i></b> The recently proposed Munich-transarterial chemoembolisation-score (M-TACE) was tailored to suit hepatocellular Carcinoma (HCC) patients evaluated for TACE. M-TACE outperformed the established HCC-staging-systems and successfully passed external validation. Modifications of staging-systems through the rearrangement of stages or by adding prognostic factors are methods of improving prognostic power. M-TACEs performance compared to scores modified this way should be tested. <b><i>Methods:</i></b> Seven well-known HCC staging-systems (including Cancer of the Liver Italian Program-score [CLIP] and Barcelona Clinic liver cancer [BCLC]) and 2 TACE-specific scores (Selection for Transarterial Chemoembolisation Treatment [STATE] and Hepatoma Arterial embolisation Prognostic [HAP]) were rearranged in a cohort of 186 TACE-patients through score-point-analysis and subsequent linking of non-significant adjacent score-points. Additionally, a new score was constructed by combining the top established staging-system in TACE patients (CLIP-TACE) and the prognostic parameter with the highest hazard ratio for death in the TACE-cohort [C-reactive protein (CRP)]. Additionally, the TACE-tailored-scores were applied to an external TACE-cohort (<i>n</i> = 71). ­<b><i>Results:</i></b> Rearrangement resulted in optimal stratification and monotonicity. CLIP-TACE demonstrated the best prognostic capability of all rearranged scores (c-index 0.668, AIC 1294) and the addition of CRP yielded further prognostic improvement (c-index 0.680, AIC 1289). However, superiority over M-TACE could not be achieved by any of the new scores in the internal and external cohort. <b><i>Conclusion:</i></b> M-TACE outperforms TACE-tailored modifications of all relevant HCC-staging-systems. Prospective validation of M-TACE to promote its role as the preferred staging-system for TACE-patients is therefore justified.
DOI: 10.7284/104205
title: Radiometer data collected during research cruise WS1007 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104206
title: Radiometer data collected during research cruise WS1007 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104211
title: Radiometer data collected during research cruise WS1007 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104210
title: Rain Gauge data collected during research cruise WS1007 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104212
title: Singlebeam Echosounder data collected during research cruise WS1007 using a Knudsen 320B/P instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104207
title: Water Temperature data collected during research cruise WS1007 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104208
title: TSG (Thermosalinograph) data collected during research cruise WS1007 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104209
title: Winch data collected during research cruise WS1007 using a General Oceanics DT1020 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104217
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1008 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith
DOI: 10.7284/104218
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1008 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith
DOI: 10.7284/104213
title: INS (Inertial Navigation System) data collected during research cruise WS1008 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104229
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1009 using a RDI BB-600 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104230
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1009 using a RDI OS-75 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104228
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise WS1009 using a Sea-Bird SBE-911+ instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104231
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1009 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104232
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1009 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104233
title: Gyrocompass data collected during research cruise WS1009 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104227
title: INS (Inertial Navigation System) data collected during research cruise WS1009 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104234
title: Radiometer data collected during research cruise WS1009 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104235
title: Radiometer data collected during research cruise WS1009 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104239
title: Radiometer data collected during research cruise WS1009 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104238
title: Rain Gauge data collected during research cruise WS1009 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104240
title: Singlebeam Echosounder data collected during research cruise WS1009 using a Knudsen 320B/P instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104236
title: Water Temperature data collected during research cruise WS1009 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104237
title: TSG (Thermosalinograph) data collected during research cruise WS1009 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104243
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1010 using a RDI BB-600 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104244
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1010 using a RDI OS-75 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104242
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise WS1010 using a Sea-Bird SBE-911+ instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition