cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1019906.v1
title: smFRET example dataset for the FRETBursts software

description: This fileset contains single-molecule FRET datasets used as demonstrative dataset for the FRETBursts software (https://github.com/tritemio/FRETBursts). These datasets come from smFRET experiments on a usALEX and 8-spot smFRET setups. <strong>Dataset description</strong> Currently, two datasets are published: the first is a single-spot usALEX dataset and the second one is an 8-spot smFRET with single laser excitation. <strong>usALEX: '0023uLRpitc_NTP_20dT_0.5GndCl.sm'</strong> This dataset is a usALEX measurement of 20dt ssDNA oligos doubly labeled with Cy3B and Atto647N. The excitation laser frequencies are 523nm and 635nm. The objective lens is a 1.2NA Olympus water immersion lens. The 2 detectors are both Perkin Elmer (now Excelitas) single-pixel SPADs. <strong>8-spot smFRET '12d_New_30p_320mW_steer_3.dat'</strong> This dataset is a smFRET measurement performed on a 8-spot smFRET system employing a single laser excitation (8ps pulsed, 532nm). The setup is an 8 excitation spots smFRET setup employing 2 8-pixel SPAD arrays fabricated in custom technology by the SPADLab group at Politecnico di Milano (Italy). The 8 excitation spots are generated by an LCOS-SLM and focused in the sample with an water immersion NA 1.2 Olympus lens. The sample is 40 base-pairs dsDNA oligo doubly labeled with ATTO550 and ATTO647N. The base-pair separation between the dyes is 12 base-pairs.
DOI: 10.6084/m9.figshare.1019941.v2
title: DTI analysis in patients with primary open-angle glaucoma: impact of registration on voxel-wise statistics

description: DTI analysis in patients with primary open-angle glaucoma: impact of registration on voxel-wise statistics
DOI: 10.6084/m9.figshare.1019906.v2
title: smFRET example datasets for the FRETBursts software

description: This fileset contains single-molecule FRET datasets used as demonstrative dataset for the FRETBursts software (https://github.com/tritemio/FRETBursts). These datasets come from smFRET experiments on a usALEX and 8-spot smFRET setups. <strong>Dataset description</strong> Currently, two datasets are published: the first is a single-spot usALEX dataset and the second one is an 8-spot smFRET with single laser excitation. <strong>usALEX: '0023uLRpitc_NTP_20dT_0.5GndCl.sm'</strong> This dataset is a usALEX measurement of 20dt ssDNA oligos doubly labeled with Cy3B and Atto647N. The excitation laser frequencies are 523nm and 635nm. The objective lens is a 1.2NA Olympus water immersion lens. The 2 detectors are both Perkin Elmer (now Excelitas) single-pixel SPADs. <strong>8-spot smFRET: '12d_New_30p_320mW_steer_3.dat'</strong> This dataset is a smFRET measurement performed on a 8-spot smFRET system employing a single laser excitation (8ps pulsed, 532nm). The setup is an 8 excitation spots smFRET setup employing 2 8-pixel SPAD arrays fabricated in custom technology by the SPADLab group at Politecnico di Milano (Italy). The 8 excitation spots are generated by an LCOS-SLM and focused in the sample with an water immersion NA 1.2 Olympus lens. The sample is 40 base-pairs dsDNA oligo doubly labeled with ATTO550 and ATTO647N. The base-pair separation between the dyes is 12 base-pairs.
DOI: 10.6084/m9.figshare.1019906.v3
title: smFRET example datasets for the FRETBursts software

description: This fileset contains single-molecule FRET datasets used as demonstrative dataset for the FRETBursts software (https://github.com/tritemio/FRETBursts). These datasets come from smFRET experiments on a usALEX and 8-spot smFRET setups. <strong>Dataset description</strong> Currently, two datasets are published: the first is a single-spot usALEX dataset and the second one is an 8-spot smFRET with single laser excitation. <strong>usALEX: '0023uLRpitc_NTP_20dT_0.5GndCl.sm'</strong> This dataset is a usALEX measurement of 20dt ssDNA oligos doubly labeled with Cy3B and Atto647N. The excitation laser frequencies are 523nm and 635nm. The objective lens is a 1.2NA Olympus water immersion lens. The 2 detectors are both Perkin Elmer (now Excelitas) single-pixel SPADs. <strong>8-spot smFRET: '12d_New_30p_320mW_steer_3.dat'</strong> This dataset is a smFRET measurement performed on a 8-spot smFRET system employing a single laser excitation (8ps pulsed, 532nm). The setup is an 8 excitation spots smFRET setup employing 2 8-pixel SPAD arrays fabricated in custom technology by the SPADLab group at Politecnico di Milano (Italy). The 8 excitation spots are generated by an LCOS-SLM and focused in the sample with an water immersion NA 1.2 Olympus lens. The sample is 40 base-pairs dsDNA oligo doubly labeled with ATTO550 and ATTO647N. The base-pair separation between the dyes is 12 base-pairs.
DOI: 10.6084/m9.figshare.1019867
title: <i>Meteorus</i> Haliday (Hymenoptera: Braconidae) parasitoids of Pyralidae: description and biology of two new species and first record of <i>Meteorus desmiae</i> Zitani, 1998 from Ecuador

description: Two new Ecuadorian wasp species attacking pyralid larvae are described: <i>Meteorus albisericus</i> and <i>M</i><i>eteorus</i><i>pyralivorus</i>, as well as a new Ecuadorian distribution record for <i>M</i><i>eteorus</i><i>desmiae</i> Zitani, another pyralid parasitoid, previously known from Costa Rica and Colombia. The hosts of <i>M.</i><i>albisericus</i> were found feeding on <i>Clibadium glabrescens</i> S. F. Blake (Asteraceae), <i>Diplazium costale</i> var. <i>robustum</i> (Sodiro) Stolze (Dryopteridaceae), <i>Brunellia tomentosa</i> Bonpl. (Brunelliaceae) and <i>Cavendishia</i> sp. Lindl. (Ericaceae). <i>Chusquea scandens</i> Kunth (Poaceae) is the associated plant for <i>M.</i><i>pyralivorus</i> hosts. <i>M</i><i>eteorus</i><i>. albisericus</i> is the first Neotropical <i>Meteorus</i> species with dorsopes whose biology is known. We hypothesize that the parasitism of pyraloid caterpillars has originated at least twice in Neotropical <i>Meteorus</i>.http://zoobank.org/urn:lsid:zoobank.org:pub:B603F36B-4645-490D-AD4D-469088EEF36F
DOI: 10.6084/m9.figshare.1019906.v4
title: smFRET example datasets for the FRETBursts software

description: This fileset contains single-molecule FRET datasets used as demonstrative dataset for the FRETBursts software (https://github.com/tritemio/FRETBursts). These datasets come from smFRET experiments on a usALEX and 8-spot smFRET setups. <strong>Dataset description</strong> Currently, two datasets are published: the first is a single-spot usALEX dataset and the second one is an 8-spot smFRET with single laser excitation. <strong>usALEX: '0023uLRpitc_NTP_20dT_0.5GndCl.sm'</strong> This dataset is a usALEX measurement of 20dt ssDNA oligos doubly labeled with Cy3B and Atto647N. The excitation laser frequencies are 523nm and 635nm. The objective lens is a 1.2NA Olympus water immersion lens. The 2 detectors are both Perkin Elmer (now Excelitas) single-pixel SPADs. <strong>8-spot smFRET: '12d_New_30p_320mW_steer_3.dat'</strong> This dataset is a smFRET measurement performed on a 8-spot smFRET system employing a single laser excitation (8ps pulsed, 532nm). The setup is an 8 excitation spots smFRET setup employing 2 8-pixel SPAD arrays fabricated in custom technology by the SPADLab group at Politecnico di Milano (Italy). The 8 excitation spots are generated by an LCOS-SLM and focused in the sample with an water immersion NA 1.2 Olympus lens. The sample is 40 base-pairs dsDNA oligo doubly labeled with ATTO550 and ATTO647N. The base-pair separation between the dyes is 12 base-pairs.
DOI: 10.6084/m9.figshare.1019867.v2
title: <i>Meteorus</i> Haliday (Hymenoptera: Braconidae) parasitoids of Pyralidae: description and biology of two new species and first record of <i>Meteorus desmiae</i> Zitani, 1998 from Ecuador

description: Two new Ecuadorian wasp species attacking pyralid larvae are described: <i>Meteorus albisericus</i> and <i>M</i><i>eteorus</i><i>pyralivorus</i>, as well as a new Ecuadorian distribution record for <i>M</i><i>eteorus</i><i>desmiae</i> Zitani, another pyralid parasitoid, previously known from Costa Rica and Colombia. The hosts of <i>M.</i><i>albisericus</i> were found feeding on <i>Clibadium glabrescens</i> S. F. Blake (Asteraceae), <i>Diplazium costale</i> var. <i>robustum</i> (Sodiro) Stolze (Dryopteridaceae), <i>Brunellia tomentosa</i> Bonpl. (Brunelliaceae) and <i>Cavendishia</i> sp. Lindl. (Ericaceae). <i>Chusquea scandens</i> Kunth (Poaceae) is the associated plant for <i>M.</i><i>pyralivorus</i> hosts. <i>M</i><i>eteorus</i><i>. albisericus</i> is the first Neotropical <i>Meteorus</i> species with dorsopes whose biology is known. We hypothesize that the parasitism of pyraloid caterpillars has originated at least twice in Neotropical <i>Meteorus</i>.http://zoobank.org/urn:lsid:zoobank.org:pub:B603F36B-4645-490D-AD4D-469088EEF36F
DOI: 10.6084/m9.figshare.1019867.v1
title: <i>Meteorus</i> Haliday (Hymenoptera: Braconidae) parasitoids of Pyralidae: description and biology of two new species and first record of <i>Meteorus desmiae</i> Zitani, 1998 from Ecuador

description: Two new Ecuadorian wasp species attacking pyralid larvae are described: <i>Meteorus albisericus</i> and <i>Meteorus pyralivorus</i>, as well as a new Ecuadorian distribution record for <i>Meteorus desmiae</i> Zitani, another pyralid parasitoid, previously known from Costa Rica and Colombia. The hosts of <i>M. albisericus</i> were found feeding on <i>Clibadium glabrescens</i> S. F. Blake (Asteraceae), <i>Diplazium costale</i> var. <i>robustum</i> (Sodiro) Stolze (Dryopteridaceae), <i>Brunellia tomentosa</i> Bonpl. (Brunelliaceae) and <i>Cavendishia</i> sp. Lindl. (Ericaceae). <i>Chusquea scandens</i> Kunth (Poaceae) is the associated plant for <i>M. pyralivorus</i> hosts. <i>Meteorus. albisericus</i> is the first Neotropical <i>Meteorus</i> species with dorsopes whose biology is known. We hypothesize that the parasitism of pyraloid caterpillars has originated at least twice in Neotropical <i>Meteorus</i>.http://zoobank.org/urn:lsid:zoobank.org:pub:B603F36B-4645-490D-AD4D-469088EEF36F
DOI: 10.6084/m9.figshare.1019906.v5
title: smFRET example datasets for the FRETBursts software

description: This fileset contains single-molecule FRET datasets used as demonstrative dataset for the FRETBursts software (https://github.com/tritemio/FRETBursts). These datasets come from smFRET experiments on a usALEX and 8-spot smFRET setups. <strong>Dataset description</strong> Currently, two datasets are published: the first is a single-spot usALEX dataset and the second one is an 8-spot smFRET with single laser excitation. <strong>usALEX: '0023uLRpitc_NTP_20dT_0.5GndCl.sm'</strong> This dataset is a usALEX measurement of 20dt ssDNA oligos doubly labeled with Cy3B and Atto647N. The excitation laser frequencies are 523nm and 635nm. The objective lens is a 1.2NA Olympus water immersion lens. The 2 detectors are both Perkin Elmer (now Excelitas) single-pixel SPADs. <strong>8-spot smFRET: '12d_New_30p_320mW_steer_3.dat'</strong> This dataset is a smFRET measurement performed on a 8-spot smFRET system employing a single laser excitation (8ps pulsed, 532nm). The setup is an 8 excitation spots smFRET setup employing 2 8-pixel SPAD arrays fabricated in custom technology by the SPADLab group at Politecnico di Milano (Italy). The 8 excitation spots are generated by an LCOS-SLM and focused in the sample with an water immersion NA 1.2 Olympus lens. The sample is 40 base-pairs dsDNA oligo doubly labeled with ATTO550 and ATTO647N. The base-pair separation between the dyes is 12 base-pairs.
DOI: 10.6084/m9.figshare.1019906.v6
title: smFRET example datasets for the FRETBursts software

description: This fileset contains single-molecule FRET datasets used as demonstrative dataset for the FRETBursts software (https://github.com/tritemio/FRETBursts). These datasets come from smFRET experiments on a usALEX and 8-spot smFRET setups. <strong>Dataset description</strong> Currently, two datasets are published: the first is a single-spot usALEX dataset and the second one is an 8-spot smFRET with single laser excitation. <strong>usALEX: '0023uLRpitc_NTP_20dT_0.5GndCl.sm'</strong> This dataset is a usALEX measurement of 20dt ssDNA oligos doubly labeled with Cy3B and Atto647N. The excitation laser frequencies are 523nm and 635nm. The objective lens is a 1.2NA Olympus water immersion lens. The 2 detectors are both Perkin Elmer (now Excelitas) single-pixel SPADs. <strong>8-spot smFRET: '12d_New_30p_320mW_steer_3.dat'</strong> This dataset is a smFRET measurement performed on a 8-spot smFRET system employing a single laser excitation (8ps pulsed, 532nm). The setup is an 8 excitation spots smFRET setup employing 2 8-pixel SPAD arrays fabricated in custom technology by the SPADLab group at Politecnico di Milano (Italy). The 8 excitation spots are generated by an LCOS-SLM and focused in the sample with an water immersion NA 1.2 Olympus lens. The sample is 40 base-pairs dsDNA oligo doubly labeled with ATTO550 and ATTO647N. The base-pair separation between the dyes is 12 base-pairs.
DOI: 10.6084/m9.figshare.1019900.v5
title: Subscription Journal Workarounds

description: Gaining access to peer reviewed literature is beyond the financial reach of everyone outside of elite research institutions: subscription prices of scholarly journals increased faster than inflation rate for several decades. This situation is known as the “price crisis” in scholarly publishing, and it’s hurting the average citizen. At the very moment that most of us carry access to a global information network in our pockets, our ability to tap into the world’s knowledge is eliminated. And it’s not an accident. It’s on purpose.
DOI: 10.6084/m9.figshare.1019906.v7
title: smFRET example datasets for the FRETBursts software

description: This fileset contains single-molecule FRET datasets used as demonstrative dataset for the FRETBursts software (https://github.com/tritemio/FRETBursts). These datasets come from smFRET experiments on a usALEX and 8-spot smFRET setups. <strong>Dataset description</strong> Currently, two datasets are published: the first is a single-spot usALEX dataset and the second one is an 8-spot smFRET with single laser excitation. <strong>usALEX: '0023uLRpitc_NTP_20dT_0.5GndCl.sm'</strong> This dataset is a usALEX measurement of 20dt ssDNA oligos doubly labeled with Cy3B and Atto647N. The excitation laser frequencies are 523nm and 635nm. The objective lens is a 1.2NA Olympus water immersion lens. The 2 detectors are both Perkin Elmer (now Excelitas) single-pixel SPADs. <strong>8-spot smFRET: '12d_New_30p_320mW_steer_3.dat'</strong> This dataset is a smFRET measurement performed on a 8-spot smFRET system employing a single laser excitation (8ps pulsed, 532nm). The setup is an 8 excitation spots smFRET setup employing 2 8-pixel SPAD arrays fabricated in custom technology by the SPADLab group at Politecnico di Milano (Italy). The 8 excitation spots are generated by an LCOS-SLM and focused in the sample with an water immersion NA 1.2 Olympus lens. The sample is 40 base-pairs dsDNA oligo doubly labeled with ATTO550 and ATTO647N. The base-pair separation between the dyes is 12 base-pairs.
DOI: 10.6084/m9.figshare.1019906.v8
title: smFRET example datasets for the FRETBursts software

description: This fileset contains single-molecule FRET datasets used as demonstrative dataset for the FRETBursts software (https://github.com/tritemio/FRETBursts). These datasets come from smFRET experiments on a usALEX and 8-spot smFRET setups. <strong>Dataset description</strong> Currently, two datasets are published: the first is a single-spot usALEX dataset and the second one is an 8-spot smFRET with single laser excitation. <strong>usALEX: '0023uLRpitc_NTP_20dT_0.5GndCl.sm'</strong> This dataset is a usALEX measurement of 20dt ssDNA oligos doubly labeled with Cy3B and Atto647N. The excitation laser frequencies are 523nm and 635nm. The objective lens is a 1.2NA Olympus water immersion lens. The 2 detectors are both Perkin Elmer (now Excelitas) single-pixel SPADs. <strong>8-spot smFRET: '12d_New_30p_320mW_steer_3.dat'</strong> This dataset is a smFRET measurement performed on a 8-spot smFRET system employing a single laser excitation (8ps pulsed, 532nm). The setup is an 8 excitation spots smFRET setup employing 2 8-pixel SPAD arrays fabricated in custom technology by the SPADLab group at Politecnico di Milano (Italy). The 8 excitation spots are generated by an LCOS-SLM and focused in the sample with an water immersion NA 1.2 Olympus lens. The sample is 40 base-pairs dsDNA oligo doubly labeled with ATTO550 and ATTO647N. The base-pair separation between the dyes is 12 base-pairs.
DOI: 10.6084/m9.figshare.1019853
title: Simultaneous determination of eight antibiotics from distinct classes in surface and wastewater samples by solid-phase extraction and high-performance liquid chromatography–electrospray ionisation mass spectrometry

description: A reliable multiclass method has been developed and validated for the determination of eight antibiotics from distinct classes (sulfonamides, macrolides, fluoroquinolones, tetracyclines, cephalosporins and dihydrofolate reductase inhibitors) in wastewater – influent and effluent – and surface water from Porto Alegre, Brazil. The pre-concentration and clean-up was conducted with a simple and fast protocol using solid-phase extraction allowing a 100-fold concentration factor. The proposed method was validated by using spiked blank wastewater samples in terms of linearity, repeatability, reproducibility, recovery, matrix effects and limits of detection and quantification. Recovery was obtained in the range of 66–149%. Method limit of quantification ranged between 1.6 and 61.7 ng L<sup>−1</sup>. Samples (<i>n</i> = 16) were taken from January to August 2011 in one wastewater treatment plant, which uses conventional biological treatment. Sulfamethoxazole and trimethoprim show higher concentration, ranging from &gt;10 to &lt;6500 ng L<sup>−1</sup>, whereas erythromycin presented the lower amount. Differences between influent and effluent profiles were discussed. Surface water samples (<i>n</i> = 8) were collected in Arroio Diluvio, in four sampling points, in February 2012. From the eight antibiotics analysed, five were detected: sulfamethoxazole, trimethoprim, azythromicyn, ciprofloxacin and norfloxacin, in a concentration range of 376–572 ng L<sup>−1</sup>, 27–94 ng L<sup>−1</sup>, 24–40 ng L<sup>−1</sup>, 16–66ng L<sup>−1</sup> and 30–54 ng L<sup>−1</sup>, respectively.
DOI: 10.6084/m9.figshare.1019906.v9
title: smFRET example datasets for the FRETBursts software

description: This fileset contains single-molecule FRET datasets used as demonstrative dataset for the FRETBursts software (https://github.com/tritemio/FRETBursts). These datasets come from smFRET experiments on a usALEX and 8-spot smFRET setups. <strong>Dataset description</strong> Currently, two datasets are published: the first is a single-spot usALEX dataset and the second one is an 8-spot smFRET with single laser excitation. <strong>usALEX: '0023uLRpitc_NTP_20dT_0.5GndCl.sm'</strong> This dataset is a usALEX measurement of 20dt ssDNA oligos doubly labeled with Cy3B and Atto647N. The excitation laser frequencies are 523nm and 635nm. The objective lens is a 1.2NA Olympus water immersion lens. The 2 detectors are both Perkin Elmer (now Excelitas) single-pixel SPADs. <strong>8-spot smFRET: '12d_New_30p_320mW_steer_3.dat'</strong> This dataset is a smFRET measurement performed on a 8-spot smFRET system employing a single laser excitation (8ps pulsed, 532nm). The setup is an 8 excitation spots smFRET setup employing 2 8-pixel SPAD arrays fabricated in custom technology by the SPADLab group at Politecnico di Milano (Italy). The 8 excitation spots are generated by an LCOS-SLM and focused in the sample with an water immersion NA 1.2 Olympus lens. The sample is 40 base-pairs dsDNA oligo doubly labeled with ATTO550 and ATTO647N. The base-pair separation between the dyes is 12 base-pairs.
DOI: 10.6084/m9.figshare.1019853.v1
title: Simultaneous determination of eight antibiotics from distinct classes in surface and wastewater samples by solid-phase extraction and high-performance liquid chromatography–electrospray ionisation mass spectrometry

description: A reliable multiclass method has been developed and validated for the determination of eight antibiotics from distinct classes (sulfonamides, macrolides, fluoroquinolones, tetracyclines, cephalosporins and dihydrofolate reductase inhibitors) in wastewater – influent and effluent – and surface water from Porto Alegre, Brazil. The pre-concentration and clean-up was conducted with a simple and fast protocol using solid-phase extraction allowing a 100-fold concentration factor. The proposed method was validated by using spiked blank wastewater samples in terms of linearity, repeatability, reproducibility, recovery, matrix effects and limits of detection and quantification. Recovery was obtained in the range of 66–149%. Method limit of quantification ranged between 1.6 and 61.7 ng L<sup>−1</sup>. Samples (<i>n</i> = 16) were taken from January to August 2011 in one wastewater treatment plant, which uses conventional biological treatment. Sulfamethoxazole and trimethoprim show higher concentration, ranging from &gt;10 to &lt;6500 ng L<sup>−1</sup>, whereas erythromycin presented the lower amount. Differences between influent and effluent profiles were discussed. Surface water samples (<i>n</i> = 8) were collected in Arroio Diluvio, in four sampling points, in February 2012. From the eight antibiotics analysed, five were detected: sulfamethoxazole, trimethoprim, azythromicyn, ciprofloxacin and norfloxacin, in a concentration range of 376–572 ng L<sup>−1</sup>, 27–94 ng L<sup>−1</sup>, 24–40 ng L<sup>−1</sup>, 16–66ng L<sup>−1</sup> and 30–54 ng L<sup>−1</sup>, respectively.
DOI: 10.6084/m9.figshare.1019906.v10
title: smFRET example datasets for the FRETBursts software

description: This fileset contains single-molecule FRET datasets used as demonstrative dataset for the FRETBursts software (https://github.com/tritemio/FRETBursts). These datasets come from smFRET experiments on a usALEX and 8-spot smFRET setups. <strong>Dataset description</strong> Currently, two datasets are published: the first is a single-spot usALEX dataset and the second one is an 8-spot smFRET with single laser excitation. <strong>usALEX: '0023uLRpitc_NTP_20dT_0.5GndCl.sm'</strong> This dataset is a usALEX measurement of 20dt ssDNA oligos doubly labeled with Cy3B and Atto647N. The excitation laser frequencies are 523nm and 635nm. The objective lens is a 1.2NA Olympus water immersion lens. The 2 detectors are both Perkin Elmer (now Excelitas) single-pixel SPADs. <strong>8-spot smFRET: '12d_New_30p_320mW_steer_3.dat'</strong> This dataset is a smFRET measurement performed on a 8-spot smFRET system employing a single laser excitation (8ps pulsed, 532nm). The setup is an 8 excitation spots smFRET setup employing 2 8-pixel SPAD arrays fabricated in custom technology by the SPADLab group at Politecnico di Milano (Italy). The 8 excitation spots are generated by an LCOS-SLM and focused in the sample with an water immersion NA 1.2 Olympus lens. The sample is 40 base-pairs dsDNA oligo doubly labeled with ATTO550 and ATTO647N. The base-pair separation between the dyes is 12 base-pairs.