cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1477448.08fu
title: SH1477448.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1477449.08fu
title: SH1477449.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1940954.08fu
title: SH1940954.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1940955.08fu
title: SH1940955.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1940956.08fu
title: SH1940956.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1477450.08fu
title: SH1477450.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1477451.08fu
title: SH1477451.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1940957.08fu
title: SH1940957.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1940958.08fu
title: SH1940958.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1477452.08fu
title: SH1477452.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5061/dryad.c6s34/2
title: Mosquito Resistance Assay Data

description: The data from the mosquito resistance assay were collected in the lab, initially recorded in excel, and analyzed in SPSS IBM version 21.  These data consist of two worksheets.  The InVivoEcoliGrowth worksheet contains the average growth of Escherichia coli 24 hr post-injection with 0.2 uL of heat-killed E. coli.  The MortalityData worksheet contains the mortality data associated with this experiment across 24 hr.
DOI: 10.5061/dryad.j1917/1
title: Genotype of Fagus sylvatica adult and seedlings at Mont Ventoux
DOI: 10.5061/dryad.j1917/2
title: Ecological variables measured in Fagus sylvatica plots in Mont Ventoux
DOI: 10.5061/dryad.jb0t7/1
title: OUM C.29631

description: Holotype of Enalikter aphson in VAXML format (see ReadMe file)
DOI: 10.5061/dryad.jb0t7/2
title: OUM C.29632

description: Specimen of Enalikter aphson in VAXML format (see ReadMe file)
DOI: 10.5061/dryad.jb0t7/3
title: OUM C.29633

description: Specimen of Enalikter aphson in VAXML format (see ReadMe file).
DOI: 10.5061/dryad.kj238/1
title: HartfieldAlizon2013Sim

description: README FOR SIMULATION FILES: This file is the source code for the emergence simulations used in the Hartfield and Alizon 2013 paper "Epidemiological feedbacks affect evolutionary emergence of pathogens". Simulations are written in C and need to be compiled prior to execution. See blurb at start of each program for description and how to execute. Please also note that simulations use routines that are part of the GNU Scientific Library (GSL). Since GSL is distributed under the GNU General Public License (http://www.gnu.org/copyleft/gpl.html), you must download it separately from these files. Comments should be sent to Matthew Hartfield (matthew.hartfield@ird.fr).
DOI: 10.5061/dryad.km246/2
title: Genbank-numbers_AFLP-identifiers

description: Genbank accession numbers and AFLP identifiers
DOI: 10.5061/dryad.kn087/1
title: 50K cattle SNP data

description: This folder contains 50k cattle SNP data in the format:[SNPNUMBER, INDIVDUAL ID, GENOTYPE], where: SNPnumber is described in ibmc_markers041709.csv; InidvdualID is described in the file all_ind_info.csv; Genotype is in form 1= homozygous for A, 2=homozygous for B, 3= heterozygous, 10 missing data; Indivduals are separated into files by their Breed Code, as described in breedcodes.csv, and in all_ind_info.csv. Xheterozygosity.csv lists number of heterozygotes at X loci, used to differentiate males and females. The 1369 indivduals listed in Xheterozygosity.csv are the indivduals retained in anayses after filtering. autosomal_snp.csv lists all automsal snp loci retained after filtering. X_snp.csv lists all snps retained on the X chromosome after removing pseudo-autosomal region and filtering. For further information please contact Emily Jane McTavish ejmctavish@utexas.edu
DOI: 10.5061/dryad.mf172sf0/4
title: TransectDensities

description: Weekly average densities of the flowerheads of H. virgata and flower visitors to H. virgata in six 1m x 30m transects located within the approximately 0.7-ha H. virgata patch containing the experimental plots referenced above.  All flowerheads in each transect were counted once weekly.  Insect densities were recorded during slow walks along the side of each transect three times per morning of the experiment, for a total of 15 times per week.  These transect walks were randomly interspersed with the insect visitation observations described in Visitation.csv.
DOI: 10.5061/dryad.qb4gs/1
title: 5P_COI_MSA
DOI: 10.5061/dryad.qb4gs/2
title: 3P_COI_MSA
DOI: 10.5061/dryad.qb4gs/3
title: Mosquito_COI
DOI: 10.5061/dryad.r7c7p/1
title: PandIpunishers

description: Data from experiments in Stata format and do-file for the supporting analyses.
DOI: 10.5061/dryad.rp6gt/1
title: RawData_DRYAD_031913

description: All raw data, including: Morinda tolerance, OA-HA behavior, OA boundary lines, KD times, and flow rate
DOI: 10.5061/dryad.s76t7/1
title: Microsatellite genotpyes for tammar wallabies from Kangaroo Island and Garden Island

description: Microsatellite genotypes for autosomal (chromosome 2), X-linked and Y-linked loci. Data for two tammar wallaby populations: Kangaroo Island, South Australia (KI) and Garden Island, Western Australia (GI). "All loci" tab has data for 29 loci, with missing data denoted by "-9" and sexes denoted "M" for male and "F" for female. Three other tabs have data in GenAlEx input format for chromosomes 2, X and Y respectively. These only include data for polymorphic loci without significant LD as were used in population genetic analyses. Missing data here are denoted by "0".
DOI: 10.5061/dryad.s8g15/2
title: Data for Archive

description: Title of each excel file describes the experiments
DOI: 10.5061/dryad.ss17b/1
title: Raw data_Eitzinger et al_Effect of prey quality

description: Time series experiment with Lithobius spp. fed with either Collembola (Sinella curviseta), Lumbricidae (Lumbricus terrestris) or Diptera prey (Drosophila melanogaster). File includes data on succesful prey DNA detection, predator body mass before and after feeding and prey DNA quantity in predator guts. Missing data is indicated as NA
DOI: 10.5061/dryad.vg7b1/1
title: Afro-alpine taxonomic reference library version 1.0

description: This file contains the sequences of the taxonomic reference library version 1.0 for the African alpine flora. Sequences cover the P6 loop of the trnL. Header lines contain the species names followed by identity numbers (O-DP numbers) that correspond to specimen numbers in the herbarium of the Natural History Museum, University of Oslo, Norway. Sampling for the afro-alpine taxonomic reference library was carried out during 2007-2009 in Ethiopia, Kenya, Tanzania, and Uganda. Details on DNA extractions, PCRs, sequencing, and formatting of the final database can be found in the associated publication.Contact author: Sanne Boessenkool (sanneboessenkool@gmail.com)
DOI: 10.5061/dryad.vg7b1/2
title: Sequences from dataset 1 with identification using the Afro-alpine reference library

description: The unique P6 loop trnL sequences produced by amplification of DNA preserved in sediments from the crater swamp and crater lake on Mt. Gahinga and Mt. Muhavura, respectively, on the Virunga Volcanoes of the Albertine Rift, eastern Africa. Taxonomic identification of sequences was inferred using the Afro-alpine reference library v.1. Further details can be found in the ReadMe file.
DOI: 10.5061/dryad.0n761/1
title: primates.eastman.isler_pruned.tree.txt

description: 126 tip tree resulting from intersecting the Redding et al. (2010) primate phylogeny in auteur with the primate data reported Isler et al. (2008). Branches are measured in units of Ma.
DOI: 10.5061/dryad.0n761/2
title: primates.eastman.isler_pruned.ecv.data

description: 126 row data matrix of endocranial volume (ECV) measurements resulting from intersecting the Redding et al. (2010) primate phylogeny in auteur with the primate data reported Isler et al. (2008). Data has been log-transformed.
DOI: 10.5061/dryad.1vt02/1
title: Migliore et al - AFLP Myrtus nivellei

description: AFLP (Amplified fragment Length Polymorphism) dataset examined for 215 individuals of Myrtus nivellei (Myrtaceae) sampled within 23 wadis in the central Saharan mountains, and listed per row. Each individual is denoted by a four-letter code: one letter for the country (A for Algeria), two letters for the mountain range (TA for Tassili n’Ajjer, HO for Hoggar and IM for Immidir), and one letter for the wadi sampled, with a supplementary letter for individuals sampled within the Tarit wadi (AIMT) more intensively analyzed.Three combinations of primers have been selected: EcoRI-AAGG with MseI-CCAG, EcoRI-AAC with MseI-CAC, EcoRI-AAC with MseI-CAA. AFLP multilocus profiles were transcribed in a matrix summarizing the presence (1) or the absence (0) of AFLP markers (123 markers retained and presented in column).
DOI: 10.5061/dryad.1vt02/2
title: Migliore et al - SSR Myrtus nivellei

description: SSR (simple sequence repeats) dataset examined for 215 individuals of Myrtus nivellei (Myrtaceae) sampled within 23 wadis in the central Saharan mountains, and listed per row. Each individual is denoted by a four-letter code: one letter for the country (A for Algeria), two letters for the mountain range (TA for Tassili n’Ajjer, HO for Hoggar and IM for Immidir), and one letter for the wadi sampled, with a supplementary letter for individuals sampled within the Tarit wadi (AIMT) more intensively analyzed. Eleven nuclear microsatellite markers (Myrcom1 to Myrcom11) developed for Myrtus communis by Albaladejo et al. 2010 (see reference [48] in the article) were used in this study; only the seven polymorphic loci were presented here.
DOI: 10.5061/dryad.29g768sc/1
title: DLoop_T_Zillii

description: Tilapia zillii D-loop sequence alignment in Fasta format. TAUP numbers are voucher specimens deposited in the National Collection of Natural History at Tel- Aviv University. Haplotype numbers are specified. Populations and basins of origin are denoted as follows: TM, Taninim (coastal); EA, Ein Afek (coastal); KN, Kishon (Kishon); KT, Kinneret (Jordan); BS, Beit She’an (Jordan); EF, Ein Feshkha (Dead Sea); NH, Ne’ot HaKikar (Dead-Sea introduced); RG, Ramat Gan (coastal introduced); NM, Nitzanim (coastal introduced); MA, HaMa'apil (coastal introduced). Haplotypes of each population have been submitted under under accession numbers EU163705-EU163723 and FJ613474-FJ613479
DOI: 10.5061/dryad.29g768sc/2
title: meristics

description: Counts of meristic characters in Tilapia zillii. TAUP numbers are voucher specimens deposited in the National Collection of Natural History at Tel- Aviv University. Populations of origin are denoted as follows: TM, Taninim (coastal); EA, Ein Afek (coastal); KN, Kishon (Kishon); KT, Kinneret (Jordan); BS, Beit She’an (Jordan); EF, Ein Feshkha (Dead Sea); NH, Ne’ot HaKikar (Dead-Sea introduced); RG, Ramat Gan (coastal introduced); NM, Nitzanim (coastal introduced); MA, HaMa'apil (coastal introduced). The characters considered are denoted as follows: LL1, Number of scales along the upper lateral line; LL2, Number of scales along the lower lateral line; TR1, Number of scales between the dorsal fin and the upper lateral line; TR2, Number of scales between the upper and lower lateral line; TR3, Number of scales between the lower lateral line and the anal fin; P, Number of rays in the pectoral fin; Pbr, Number of branched rays in the pectoral fin; V, Number of rays in the ventral fin; Vbr, Number of branched rays in the ventral fin; D, Number of rays in the dorsal fin; Dbr, Number of branched rays in the dorsal fin; DS, Number of spikes in the dorsal fin; A, Number of rays in the anal fin; Abr, Number of branched rays in the anal fin; AS, Number of spikes in the anal fin; C, Number of rays in the caudal fin; Cbr, Number of branched rays in the caudal fin; LPR, The position of the longest pectoral ray; LVR, The position of the longest ventral ray; LDR, The position of the longest dorsal ray; LAR, The position of the longest anal ray; GR, The number of gill rakers
DOI: 10.5061/dryad.2rk39/1
title: Oncidiinae Neubig et al 5 region

description: Nexus file of DNA sequence data of five combined DNA regions
DOI: 10.5061/dryad.2rk39/2
title: Oncidiinae Neubig et al 7 region

description: Nexus file of DNA sequence data of 7 DNA regions of Oncidiinae
DOI: 10.5061/dryad.45672js4/1
title: JetzFine110kmSR

description: Richness data (Total, Resident, Endemic; for Birds, Mammals and Amphibians) for the 9,253 110x110km grid cells analyzed. For details see Materials & Methods - Finer-scale analyses
DOI: 10.5061/dryad.5b14n/1
title: Immune response costs are associated with changes in resource acquisition and not resource reallocation
DOI: 10.5061/dryad.5tp88/1
title: occurrence_data

description: This file contains raw environmental data for each species used in our analysis.
DOI: 10.5061/dryad.5tp88/2
title: phylogeny

description: This file contains a nexus formatted file with a subsample of 900 trees from the posterior distribution of trees from the BEAST analysis.  Additionally, three log files are included.
DOI: 10.5061/dryad.61hd3122/1
title: data
DOI: 10.5061/dryad.6pd36/10
title: A4511_J6

description: Pyrotag reads acquired for sample A4511_J6, in fasta format
DOI: 10.5061/dryad.6pd36/2
title: A4501_A25_Pd

description: Pyrotag reads acquired for sample A4501_A25_Pd, in fasta format
DOI: 10.5061/dryad.6pd36/3
title: A4501_A25_Pm
DOI: 10.5061/dryad.6pd36/4
title: A4501_A35_P

description: Pyrotag reads acquired for sample A4501_A35_P, in fasta format
DOI: 10.5061/dryad.6pd36/5
title: A4501_J2.5

description: Pyrotag reads acquired for sample A4501_J2.5, in fasta format
DOI: 10.5061/dryad.6pd36/6
title: A4511_J2.5

description: Pyrotag reads acquired for sample A4511_J2.5, in fasta format