cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3608492_d7
title: Additional file 5: Table S5. of Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare)

description: Novel ORFs in the barley mitochondrial genome. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3608513_d3
title: Additional file 1: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Conditions of use for programs P-clouds and Red. An analysis of parameters to use with P-clouds and Red is presented in order to optimize the calculation of the amount of repeats in an eukaryotic genome. (ODT 36 kb)
DOI: 10.6084/m9.figshare.c.3608492_d8
title: Additional file 6: Table S6. of Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare)

description: Repeated sequences in the mitochondrial genome of H602. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3608513_d4
title: Additional file 8: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Diversity of CR1 within galGal4. The clustering of CR1 copies into subfamilies was re-investigated using SiLiX. Eight subfamilies were found, 7 of them matching with the Repbase sub-families CR1-C, CR1-D, CR1_F, CR1-G, CR1_GG, CR1-H, and CR1-Y. Their respective abundance in galGal4 was summarized in Table S2. (ODT 30 kb)
DOI: 10.6084/m9.figshare.c.3608513_d5
title: Additional file 11: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Proteins encoded by the remnant polinton in the RFJ and turkey genomes. (ODT 23 kb)
DOI: 10.6084/m9.figshare.c.3608522_d2
title: Additional file 9: of Polymorphisms and minihaplotypes in the VvNAC26 gene associate with berry size variation in grapevine

description: Diversity values and neutrality tests for the grapevine VvNAC26 gene. The number of individuals (n), haplotypes (H), segregating sites (S), nucleotide diversity (π), Watterson’s estimate (θ), and Tajima’s D and Fu and Li’s D* tests of neutral evolution are shown for the 114 grapevine varieties included in this study and for the three genetic groups. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3608528_d1
title: Additional file 1: of Navigating barriers: two-year follow up on recommendations to improve the use of maternal health guidelines in Kosovo

description: Interview guide. (ZIP 54 kb)
DOI: 10.6084/m9.figshare.c.3608513_d6
title: Additional file 7: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Correspondence between the names of consensus describing TEs in Repbase and ISB, and the TE models calculated with REPET. Results are summarized within a table. (ODS 27 kb)
DOI: 10.6084/m9.figshare.c.3608513_d12
title: Additional file 3: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Features of SSRs in galGal4. An inventory of simples repeats, microsatellites, large tandem arrays in galGal4 is supplied. (ODT 251 kb)
DOI: 10.6084/m9.figshare.c.3608522_d7
title: Additional file 1: of Polymorphisms and minihaplotypes in the VvNAC26 gene associate with berry size variation in grapevine

description: List of the 114 grapevine varieties evaluated in this study. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3608513_d13
title: Additional file 15: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Graph showing the expected and observed coverages of TEs (A), genes (B), S/MAR (C) and CpG islands (D) in galGal4 chromosomes. Permutation tests were used in order to define whether TEs, genes, S/MAR and CpG islands were randomly distributed along chromosomes. (ODT 1829 kb)
DOI: 10.6084/m9.figshare.c.3608513_d14
title: Additional file 2: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Evaluating the efficiency of P-clouds and Red. This file describes data on the relaibility of P-clouds, Red and REPET for evaluating the numbers of repeats in a eukaryotic genome. A synthesis of results supports that the sequence diversity and distribution of minisatellites as well as the lack of repeated satellite DNAs in numerous microchromosomes might be a signature specific to avian genomes. (ODT 23 kb)
DOI: 10.6084/m9.figshare.c.3608513_d16
title: Additional file 10: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Features of 8 repeat models that cannot be assigned to a known eukaryotic TE. The sequence features of 27 consensuses gathered into 8 TE models were analysed. Results supported that none of them can be definitively considered as originating from LTR elements. (ODT 91 kb)
DOI: 10.6084/m9.figshare.c.3608561_d2
title: MOESM7 of Associations between blood glucose level and outcomes of adult in-hospital cardiac arrest: a retrospective cohort study

description: Additional file 7.
DOI: 10.6084/m9.figshare.c.3608513_d17
title: Additional file 14: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Origins of differences between ISB and [TE + DM] annotations. ISB and [TE + DM] annotations were samples in order to define the origins of differences. (ODT 101 kb)
DOI: 10.6084/m9.figshare.c.3608513_d18
title: Additional file 13: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: The number of RM annotations that had no equivalent in the [TE + DM] annotation. Results are summarized within a table between both approaches. (ODS 36 kb)
DOI: 10.6084/m9.figshare.c.3608591_d4
title: Additional file 3: Table S3. of Pre-announcement of symbiotic guests: transcriptional reprogramming by mycorrhizal lipochitooligosaccharides shows a strict co-dependency on the GRAS transcription factors NSP1 and RAM1

description: Gene expression responses in M. truncatula wild type A17 (WT), nfp-1 (NFP), dmi3 (DMI3), nsp1-1 (NSP1), and ram1-1 (RAM1) plantlet roots challenged with 10−8 M sMyc-LCOs (sMyc), 10−7 M nsMyc-LCOs (nsMyc), a mixture of 10−8 M sMyc- and 10−7 M nsMyc-LCOs (s/nsMyc), and 10−8 M Nod-LCOs (Nod). Individual sheets contain subsets of genes, as defined in the captions. Log2 average expression values (Log AveExpr), log2 fold changes (logFC) for each LCO vs. control treatment, and associated p-values are indicated. Log2 fold changes are coloured as follows: red, log2 fold change larger than 1.0; orange, log2 fold change between 0.6 and 1.0; green, log2 fold change below −1.0. Updated annotations for all Medicago probes including correspondences to release 4.0 of the M. truncatula genome and names of known M. truncatula genes are given. (XLSX 2932 kb)
DOI: 10.6084/m9.figshare.c.3608615_d1
title: Additional file 4: of The cross-interaction between global and age-comparative self-rated health on depressive symptomsâ  considering both the individual and combined effects

description: Table S1. The association between covariates and SRHs. SRH means self-rated health. SRH-global is general self rated health, while SRH-age is age-comparative selfâ  rated health. Chi-square tests were performed for statistical tests. (21 kb)
DOI: 10.6084/m9.figshare.c.3608627_d8
title: Additional file 7: of Genome comparisons provide insights into the role of secondary metabolites in the pathogenic phase of the Photorhabdus life cycle

description: Coding sequences mentioned in the text and their respective locus tags. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3608627_d10
title: Additional file 10: of Genome comparisons provide insights into the role of secondary metabolites in the pathogenic phase of the Photorhabdus life cycle

description: P. temperata specific coding sequences. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3608651_d1
title: Additional file 1: Table S1. of Analysis of the FnrL regulon in Rhodobacter capsulatus reveals limited regulon overlap with orthologues from Rhodobacter sphaeroides and Escherichia coli

description: Genes containing ChIP-seq signal with corresponding RNA-seq expression. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3608627_d11
title: Additional file 9: of Genome comparisons provide insights into the role of secondary metabolites in the pathogenic phase of the Photorhabdus life cycle

description: P. luminescens specific coding sequences. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3608651_d2
title: Additional file 10: Table S10. of Analysis of the FnrL regulon in Rhodobacter capsulatus reveals limited regulon overlap with orthologues from Rhodobacter sphaeroides and Escherichia coli

description: Orthologues of Rba.spaeroides in E. coli and their differential expression. (XLSX 63Â kb)
DOI: 10.6084/m9.figshare.c.3608660_d1
title: Additional file 1: of A germline mutation of CDKN2A and a novel RPLP1-C19MC fusion detected in a rare melanotic neuroectodermal tumor of infancy: a case report

description: Final list of candidate fusion genes with genomic coordinates and sequences output from FusionCatcher.Â (CSV 105Â kb)
DOI: 10.6084/m9.figshare.c.3608651_d3
title: Additional file 6: Table S6. of Analysis of the FnrL regulon in Rhodobacter capsulatus reveals limited regulon overlap with orthologues from Rhodobacter sphaeroides and Escherichia coli

description: Orthologues of Rba. capsulatus in Rba. sphaeroides and their differential expression. (XLSX 280Â kb)
DOI: 10.6084/m9.figshare.c.3608663_d1
title: Additional file 2: of Learning to use a body-powered prosthesis: changes in functionality and kinematics

description: Data IoF scores. (TXT 951 bytes)
DOI: 10.6084/m9.figshare.c.3608651_d4
title: Additional file 9: Table S9. of Analysis of the FnrL regulon in Rhodobacter capsulatus reveals limited regulon overlap with orthologues from Rhodobacter sphaeroides and Escherichia coli

description: Orthologues of Rba. capsulatus in E. coli and presence of FnrL/FNR ChIP signals. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.c.3608678_d3
title: Additional file 3: Figure S4. of Mice lacking the conserved transcription factor Grainyhead-like 3 (Grhl3) display increased apposition of the frontal and parietal bones during embryonic development

description: Analysis of gene expression in the developing coronal sutures of WT and Grhl3â  /â   embryos at E16.5 (A-B) The expression of Î˛-galactosidase (corresponding to the LacZ transgene inserted within the Grhl3 locus, simultaneously disrupting gene function, as well as acting as a reporter to confirm presence of the deleted allele [7]) was used to confirm loss of Grhl3. The expression of total FGFR1 (C-D), pFGFR1 (E-F), FGFR2 (G-H), Twist (I-J), Runx2 (K-L) and Noggin (M-N) was examined by immunohistochemical analysis. no significant differences in the expression of any of these genes was detected, at E16.5 within the calvaria, dura or suture regions. (ZIP 353 kb)
DOI: 10.6084/m9.figshare.c.3608678_d4
title: Additional file 1: Figure S1. of Mice lacking the conserved transcription factor Grainyhead-like 3 (Grhl3) display increased apposition of the frontal and parietal bones during embryonic development

description: 3D rotating movies of representative E18.5 skulls. Representative movies allowing better visualisation of the skull bones and coronal sutures in both WT (A) and Grhl3 â  /â   (B) E18.5 embryos. (ZIP 13 mb)
DOI: 10.6084/m9.figshare.c.3608687_d2
title: Additional file 1 of A measure of the impact of CV incompleteness on prediction error estimation with application to PCA and normalization

description: Zipped folder containing all necessary R-Code to reproduce and evaluate the real-data analyses and simulations presented in the paper and in Additional file 2, as well as Rda-files containing all fold errors computed in the real-data analysis enabling fast evaluation of the corresponding results. (ZIP16691 kb)
DOI: 10.6084/m9.figshare.c.3608702_d1
title: Additional file 1: Table S1. of 
                     Brachyspira suanatina sp. nov., an enteropathogenic intestinal spirochaete isolated from pigs and mallards: genomic and phenotypic characteristics

description: Strain names and accession numbers of available genome used for the study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3608678_d5
title: Additional file 4: Figure S5. of Mice lacking the conserved transcription factor Grainyhead-like 3 (Grhl3) display increased apposition of the frontal and parietal bones during embryonic development

description: Analysis of gene expression in the developing coronal sutures of WT and Grhl3−/− embryos at E18.5. (A-B) The expression of β-galactosidase (corresponding to the LacZ transgene inserted within the Grhl3 locus, simultaneously disrupting gene function, as well as acting as a reporter to confirm presence of the deleted allele [7]) was used to confirm loss of Grhl3. The expression of total FGFR1 (C-D), pFGFR1 (E-F), FGFR2 (G-H), Twist (I-J), Runx2 (K-L) and Noggin (M-N) was examined by immunohistochemical analysis. Other than an apparent loss of pFGFR1 in the most superficial layers of the surface ectoderm in Grhl3 −/− embryos at E18.5 (compare E with F; arrowheads), no significant differences in the expression of any of these genes was detected at E18.5, within the calvaria, dura or suture regions. (ZIP 362 kb)
DOI: 10.6084/m9.figshare.c.3608702_d2
title: Additional file 2: Table S2. of 
                     Brachyspira suanatina sp. nov., an enteropathogenic intestinal spirochaete isolated from pigs and mallards: genomic and phenotypic characteristics

description: Functional distribution of genes in different COG categories of strains B. suanatina AN4859/03, B. hyodysenteriae B78T, B. hyodysenteriae WA1 and B. intermedia PWS/AT. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3608741_d2
title: Additional file 4 of Sudden death due to paralysis and synaptic and behavioral deficits when Hip14/Zdhhc17 is deleted in adult mice

description: Individual data values for experiments where N
DOI: 10.6084/m9.figshare.c.3608732_d4
title: MOESM3 of DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses

description: Additional file 3. Tag combinations. This file contains the copy number information of sequences carrying used and unused tag combinations from datasets 1 and 2.
DOI: 10.6084/m9.figshare.c.3608747_d2
title: Additional file 3: Table S3. of A method for automated pathogenic content estimation with application to rheumatoid arthritis

description: Differential genera by comparison of NORA, UCRA, MTX, Prednisone with HLT arms. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3608711_d7
title: Additional file 4: of Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual plants

description: Differentially expressed genes identified using DESeq, heritability index and annotations from SwissProt and Arabidopsis thaliana coding sequence databases for the greenhouse experiment. (XLSX 61Â kb)
DOI: 10.6084/m9.figshare.c.3608711_d8
title: Additional file 6: of Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual plants

description: Assembled transcripts annotated with transposable element or repeat description from the SwissProt database. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3608747_d3
title: Additional file 2: Table S2. of A method for automated pathogenic content estimation with application to rheumatoid arthritis

description: a. Running platform and b. elapsed time of species classification by applying eudysbiome package on RA data. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3608711_d11
title: Additional file 8: of Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual plants

description: Genes highly connected from overall differentially expressed semi-natural field genes (67 genes); in grey, DEGs unique to field conditions (in white common in both experiments). Annotations and functions were retrieved from the TAIR website ( www.arabidopsis.org ). (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3608768_d2
title: Additional file 2: of Cynicism and other attitudes towards patients in an emergency department in a middle eastern tertiary care center

description: COREQ questionnaire guidelines. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3608807_d3
title: Additional file 2: Table S2. of An advanced bioinformatics approach for analyzing RNA-seq data reveals sigma H-dependent regulation of competence genes in Listeria monocytogenes

description: Listeria genomes used for comparative analysis of SigmaH-dependent promoters. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3608843_d1
title: Additional file 1: of Characteristics of responders to autologous bone marrow cell therapy for no-option critical limb ischemia

description: Presents the dataset supporting the conclusions of this article. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3608870_d1
title: Additional file 3: of Wheat germ-based protein libraries for the functional characterisation of the Arabidopsis E2 ubiquitin conjugating enzymes and the RING-type E3 ubiquitin ligase enzymes

description: Summary of Arabidopsis RING clones used in this study. We demonstrate their expression and their ubiquitination activities. Summary of Arabidopsis RING proteins used in this study, their expression in a wheat germ cell-free system and their ubiquitination activities. ‘M. wt. (Da)’ indicates the expected molecular weight of the expressed proteins according to RAFL database. ‘High molecular smear’ indicates the detection of smear: awhen RING protein expression was detected by immunoblot analysis or bwhen analysed in ubiquitination assays without the addition of E1 or E2. ‘Activity with UBC8/10’ indicates the E3 ligase activity of selected RING proteins tested with cAtUBC8 [14] or dAtUBC10 in this study. ‘Activity with other E2s’ indicates the E3 ligase activity of selected RING proteins tested with evarious E2s [13] or fin this study. ‘Truncated’ refers to protein that migrated more than 20 KDa less than the expected size. ‘Low expression’ refers to proteins expressed at relatively low levels. Abbreviations: yes, detected; No, not detected; nd, not tested. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.c.3608873_d6
title: Additional file 13: Table S10. of Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages

description: Allergen genes among the unigenes in the two developmental stages. (XLSX 83Â kb)
DOI: 10.6084/m9.figshare.c.3608903_d1
title: Additional file 2: of Pubertal development and prostate cancer risk: Mendelian randomization study in a population-based cohort

description: Summary data of the association of each SNP in the pubertal development genetic risk score with exposure and outcomes in the PRACTICAL consortium. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3608900_d1
title: Additional file 1 of A deformable template method for describing and averaging the anatomical variation of the human nasal cavity

description: Cross-sections for final UoA-UC geometry. File is a HDF5 data set containing cross-sectional slices for computed mean geometry. (H5 347kb)
DOI: 10.6084/m9.figshare.c.3608873_d7
title: Additional file 15: Table S12. of Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages

description: Allergen genes which did not result in Blast hits with genes from other mites or ticks among the unigenes of P. ovis in the two developmental stages. (XLSX 64Â kb)
DOI: 10.6084/m9.figshare.c.3608873_d8
title: Additional file 11: Table S9. of Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages

description: The enrichment results of downregulated DEGs in KEGG pathways. (XLS 64Â kb)
DOI: 10.6084/m9.figshare.c.3608873_d9
title: Additional file 18: Table S15. of Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages

description: Allergen genes among the downregulated DEGs. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3608873_d10
title: Additional file 9: Table S7. of Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages

description: The enrichment results of DEGs in KEGG pathways. (XLS 72Â kb)
DOI: 10.15468/dl.w6d6cv
title: Occurrence Download

description: A dataset containing 215785 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goodyera repens (L.) R.Br."
 ]
}

 The dataset includes 215785 records from 696 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032728-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3608873_d18
title: Additional file 19: Table S16. of Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages

description: Allergen genes which did not result in Blast hits with genes from other mites or ticks among the downregulated DEGs. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3608948_d2
title: Additional file 2: of Susceptibility to cigarette smoking among secondary and high school students from a socially disadvantaged rural area in Poland

description: Data set. (XLSX 1501Â kb)
DOI: 10.6084/m9.figshare.c.3608969_d1
title: Additional file 1: of Mitochondrial genomes and comparative analyses of Culex camposi, Culex coronator, Culex usquatus and Culex usquatissimus (Diptera:Culicidae), members of the coronator group

description: Mitochondrial genomes organization of species studied. Format: xls. (XLSX 28 kb)
DOI: 10.15468/dl.qza84q
title: Occurrence Download

description: A dataset containing 11267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "Country is Mexico",
 "TaxonKey is Danaus plexippus (Linnaeus, 1758)"
 ]
}

 The dataset includes 11267 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032731-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25687299
title: meta-analysis of narcissistic leadership

description: The Relationship between Narcissistic Leadership and Employee Performance and Mediating Mechanisms: A Meta-Analysis
DOI: 10.6084/m9.figshare.25687299.v2
title: meta-analysis of narcissistic leadership

description: The Relationship between Narcissistic Leadership and Employee Performance and Mediating Mechanisms: A Meta-Analysis
DOI: 10.5281/zenodo.14431689
title: Dataset Div Policy AEFR 2024
DOI: 10.5281/zenodo.14431690
title: Dataset Div Policy AEFR 2024
DOI: 10.6084/m9.figshare.c.3609026_d1
title: Additional file 1: Table S1. of Transcriptional regulatory networks controlling woolliness in peach in response to preharvest gibberellin application and cold storage

description: Genes exhibiting significant differential expression in peach. Analyses were performed as a factorial 2 Ă  2 design, using the LIMMA (Linear Models for Microarray and RNAseq Data) package (Smyth, 2005) at Bioconductor. (XLSX 4527 kb)