cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3600773_d6
title: Additional file 4 of Integrative analysis of genetic data sets reveals a shared innate immune component in autism spectrum disorder and its co-morbidities

description: Pathway enrichment analysis. This Excel file contains hypergeometric test p values per pathway per disease for KEGG, BioCarta, Reactome, and PID pathway collections as well as all canonical pathway gene sets collected from MSigDB version 4.0., and Fisherâ  s combined p values for ASD and its co-morbidities. (XLS 1444 kb)
DOI: 10.6084/m9.figshare.c.3600785_d1
title: Additional file 4: of ROR2 is epigenetically inactivated in the early stages of colorectal neoplasia and is associated with proliferation and migration

description: Table of qRT-PCR Primer Sequences. List of qRT-PCR primer sequences used in experimentation. (TXT 726 bytes)
DOI: 10.6084/m9.figshare.c.3600839_d3
title: MOESM3 of Three-year mortality in 30-day survivors of critical care with acute kidney injury: data from the prospective observational FINNAKI study

description: Additional file 3: Dataset 1. The data the paper conclusions are based on.
DOI: 10.6084/m9.figshare.c.3600845_d2
title: Additional file 2: of MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics

description: Primer3 parameter input file. This is the parameter for Primer3 tools to design primer pairs. Users can change these parameters to optimize and better positioning of the primer pairs for target region. These parameters are directly supplied to Primer3 tool. (TXT 478 bytes)
DOI: 10.6084/m9.figshare.c.3600845_d3
title: Additional file 1: of MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics

description: Target bed file (mandatory input file) to run primer design with MSP-HTPrimer. (TXT 74 bytes)
DOI: 10.6084/m9.figshare.c.3600764_d16
title: Additional file 7: Table E3. of Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathways

description: ALL MADAD DEGs (FCH ≥ 2, FDR ≤ 0.05). (XLSX 171 kb)
DOI: 10.6084/m9.figshare.c.3600845_d4
title: Additional file 4: of MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics

description: Hierarchical selection quality matrix with ten quality levels ranking the designed primer independent of the Primer3 level. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3600764_d17
title: Additional file 11: Table E6. of Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathways

description: IPA Pathways and GO terms IDD genes. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3600845_d5
title: Additional file 5: of MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics

description: An MSP primer UCSC custom track in GTF format produced by MSP-HTPrimer for each target sequence in a separate file. (GTF 2 kb)
DOI: 10.6084/m9.figshare.c.3600845_d6
title: Additional file 3: of MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics

description: List of restriction enzymes (mandatory input for COBRA-PCR and MSRE-PCR) in a text file one enzyme per line. (TXT 41 bytes)
DOI: 10.6084/m9.figshare.c.3600866_d1
title: Additional file 2: of Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements

description: This sheet includes information about annotation, presence/absence polymorphisms and dN/dS for each of the gene models. (XLSX 12390Â kb)
DOI: 10.15468/dl.g839f9
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ribes horridum Rupr. ex Maxim."
 ]
}

 The dataset includes 125 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032653-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3600953_d4
title: MOESM6 of Haematocrit, eggshell colouration and sexual signaling in the European starling (Sturnus vulgaris)

description: Additional file 6: Table S6. Raw data for Table 3.
DOI: 10.6084/m9.figshare.c.3600932_d6
title: Additional file 6: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

description: The addresses of the BAC clones selected for sequencing. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3600953_d5
title: MOESM7 of Haematocrit, eggshell colouration and sexual signaling in the European starling (Sturnus vulgaris)

description: Additional file 7: Table S7. Raw data-laying interval.
DOI: 10.6084/m9.figshare.c.3600953_d6
title: MOESM4 of Haematocrit, eggshell colouration and sexual signaling in the European starling (Sturnus vulgaris)

description: Additional file 4: Table S4. Raw data for Table 1.
DOI: 10.15468/dl.ssyh93
title: Occurrence Download

description: A dataset containing 955 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saxifraga nelsoniana D.Don"
 ]
}

 The dataset includes 955 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032654-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3600992_d1
title: Additional file 2 of Characterizing exons and introns by regularity of nucleotide strings

description: MATLAB function for producing plots of the cumulative evolutionary slope with plotted averages for coding, noncoding, and combination regions. (M 3.94 kb)
DOI: 10.15468/dl.zwxack
title: Occurrence Download

description: A dataset containing 4065 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla stolonifera Lehm. ex Ledeb."
 ]
}

 The dataset includes 4065 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032655-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10185440
title: WallStreetBets 2022
DOI: 10.15468/dl.yyvtqm
title: Occurrence Download

description: A dataset containing 2615 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sanguisorba stipulata Raf."
 ]
}

 The dataset includes 2615 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032656-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3601040_d10
title: Additional file 4: Table S2 of A roadmap of constitutive NF-ÎşB activity in Hodgkin lymphoma: Dominant roles of p50 and p52 revealed by genome-wide analyses

description: shows ChIP-seq regions for RelA, RelB, p50, and p52 and assigned genes. (XLSX 5263 kb)
DOI: 10.6084/m9.figshare.c.3601088_d1
title: Additional file 1 of Advantages of continuous genotype values over genotype classes for GWAS in higher polyploids: a comparative study in hexaploid chrysanthemum

description: Association scores. Tab-separated data file with q-values (LR), VIM-scores (PLS) and BFs (bayz) for all probes for all three traits. (TSV 4970 kb)
DOI: 10.6084/m9.figshare.c.3601040_d11
title: Additional file 9: Table S7 of A roadmap of constitutive NF-ÎşB activity in Hodgkin lymphoma: Dominant roles of p50 and p52 revealed by genome-wide analyses

description: shows the gene level summary of gene expression results. (XLSX 3346 kb)
DOI: 10.6084/m9.figshare.c.3601082_d2
title: Additional file 1 of Non-Markovian effects on protein sequence evolution due to site dependent substitution rates

description: P_NonMarkovian.txt. Ensemble average transition probability matrices for codons according to Eq. 5, where the rate is γ-distributed as in Eq. 3, for various t. The file is structured in 12 columns: the first two contain i and j, the other ten P ~ c ( t ) ij $\widetilde {P}^{c}(t)_{ij}$ respectively for t=0.06,0.14,0.25,0.4,0.6,0.9,1.3,1.9,2.9,4.3 corresponding to the sequence identities of 95 %,90 %...55 %,50 %. i and j identify codons by alphabetical order: 1=“AAA”, 2=“AAC”... 64=“TTT”. (TXT 550 kb)
DOI: 10.6084/m9.figshare.c.3601133_d5
title: MOESM13 of Innate immune defects in HIV permissive cell lines

description: Additional file 13: Table S5. RPKMs of the RNA-seq libraries sequenced in this work.
DOI: 10.15468/dl.5rv8rr
title: Occurrence Download

description: A dataset containing 201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tantilla atriceps (Günther, 1895)"
 ]
}

 The dataset includes 201 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032657-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3601133_d6
title: MOESM17 of Innate immune defects in HIV permissive cell lines

description: Additional file 17: File S3. List of the 249-cluster used as input in Supplemental File 1.
DOI: 10.6084/m9.figshare.c.3601133_d7
title: MOESM3 of Innate immune defects in HIV permissive cell lines

description: Additional file 3: Table S2. Description of the genes in the 249 and 110 clusters. A. List of 249 innate immunity genes that were had high expression in primary cells and low or absent expression in cell lines. B. List of 110 innate immunity genes that with low expression in resting CD4+ T cells and high expression in cell lines. The DESeq2 results of the differential expression analysis between primary CD4+ T cells and cell lines are indicated.
DOI: 10.6084/m9.figshare.c.3601187_d1
title: Additional file 2: of Improved orthologous databases to ease protozoan targets inference

description: Sample impersonated multifasta protein sample; This file provides a quick view on how the organisms’ representative proteins were stored in a single multifasta file, which impersonates an organism proteome and actually contains proteins from several orthologous groups from a single orthologous database. (FASTA 1 kb)
DOI: 10.6084/m9.figshare.c.3601187_d2
title: Additional file 3: of Improved orthologous databases to ease protozoan targets inference

description: “KO + Eggnog KOG + ProtozoaDB” orthologous groups (protein identifiers only). For each ortholog group, we list all protein identifiers (corresponding organism and accession number). (BZ2 9971 kb)
DOI: 10.6084/m9.figshare.c.3601133_d8
title: MOESM14 of Innate immune defects in HIV permissive cell lines

description: Additional file 14: Table S6. Table describing RNA-seq libraries that is used as an input for DESeq2 functions in Supplemental File 1.
DOI: 10.6084/m9.figshare.c.3601187_d3
title: Additional file 4: of Improved orthologous databases to ease protozoan targets inference

description: Inferred RBH between protozoan organisms and orthologous databases. This file provides information on inferred RBH between protozoan species against KO database and the two n-ODs created by the methodology as well. It is detailed on species-specific, pairwise and core RBH (shared between all organisms) absolute RBH and their percentage when compared to the total amount of obtained RBH. (XLS 27 kb)
DOI: 10.6084/m9.figshare.c.3601187_d4
title: Additional file 1: of Improved orthologous databases to ease protozoan targets inference

description: Orthologous databases main characteristics. This file provides a detailed view on the orthologous databases characteristics, regarding: how many organisms (total and protozoan only), orthologous groups, total proteins and the database total size. (XLS 6 kb)
DOI: 10.6084/m9.figshare.c.3601196_d1
title: Additional file 1: Figure S4. of How I report breast magnetic resonance imaging studies for breast cancer staging and screening

description: Background parenchymal enhancement. a Axial post contrast subtracted image; minimal BPE in the right breast and a large enhancing cancer in the left upper inner quadrant (same patient as in Fig.Â 2). b Axial MIP series post intravenous contrast in a patient with known right breast cancer, for staging MRI. Severe BPE. c MIP image in a patient who has previously had radiotherapy to the right breast. Note absence of BPE in the right breast compared to the left. (ZIP 4210 kb)
DOI: 10.6084/m9.figshare.c.3601199_d1
title: Additional file 5 of Predicting protein function via downward random walks on a gene ontology

description: Human_bp(TPR). This Excel Spreadsheet file includes true positive predictions, false positive predictions augmented by the True Path Rule on the top 100 positive predictions made by dRW, dRW-kNN, ITSS, PILL and Naive on Human proteins annotated with Biological Process Ontology. (XLS 242 kb)
DOI: 10.6084/m9.figshare.c.3601133_d9
title: MOESM10 of Innate immune defects in HIV permissive cell lines

description: Additional file 10: Table 3. RT-qPCR results.
DOI: 10.6084/m9.figshare.c.3601199_d2
title: Additional file 2 of Predicting protein function via downward random walks on a gene ontology

description: Yeast_bp(NoTPR). This Excel Spreadsheet file includes true positive predictions, false positive predictions of the top 100 predictions made by dRW, dRW-kNN, ITSS, PILL and Naive on Yeast proteins annotated with Biological Process Ontology. (XLS 73 kb)
DOI: 10.6084/m9.figshare.c.3601328_d2
title: Additional file 10: Table S3. of Reversing chromatin accessibility differences that distinguish homologous mitotic metaphase chromosomes

description: GVF measurements of BAC control FISH probe signal co-hybridized with scFISH probes. Columns labelled A and B represent integrated intensity measurements for each homolog in a diploid metaphase cell. Normalized integrated intensities were obtained by taking the difference in integrated intensities between homologs, and dividing by the sum of the intensities of both homologs in a given cell. Slides 1 (0.25 μM ICRF-193) and 2 (0.10 μM ICRF-193) were processed in parallel and co-hybridized with BAC control probe RP11-57P14 and scFISH probe CACNA1B with DA. Irrespective of whether ICRF-193 reversed DA (slide 1, 0.25 uM ICRF) or showed limited effect (slide 2), control probes hybridized with consistently bright intensities to both homologs. No significant differences (p = 0.85) were observed in normalized integrated intensities among control probes between slides 1 (Δμ = 0.147, Median = 0.156) and 2 (Δμ = 0.156, Median = 0.123). Slides 3 (0.50 uM ICRF) and 4 (0.25 uM ICRF) were processed in separate hybridizations and co-hybridized with BAC control probe RP11-467L20 and scFISH probe RGS7 with DA. Similarly, no significant differences (p = 0.12) were observed in normalized integrated intensities among control probes between slides 3 (Δμ = 0.104, Median = 0.078) and 4 (Δμ = 0.162, Median = 0.110).
DOI: 10.6084/m9.figshare.c.3601328_d6
title: Additional file 1: Table S1. of Reversing chromatin accessibility differences that distinguish homologous mitotic metaphase chromosomes

description: Human lymphoblastoid cell lines harvested for metaphase chromosomes were hybridized with single copy (sc) probes from indicated GRCh37 genomic coordinates. Concentrations of each treatment, optimized for in situ hybridization are indicated. Only cells treated with 5 μM of UNC1999 from GM10958 cell line were included in the statistical analysis of DA for SNRPN and ADORA2B, due to an insufficient number of mitoses at 15 μM. The numbers of metaphase cells with and without (w/o) DA are indicated for each treatment dose along with corresponding no treatment control prepared at the same time.
DOI: 10.6084/m9.figshare.c.3601460_d2
title: Additional file 3: Table S2 of Occupation, industry, and the risk of prostate cancer: a case-control study in Montréal, Canada

description: Associations between PCa risk (all PCa, low-grade and high-grade PCa) for ever employment and duration of employment, industries. (XLS 600 kb)
DOI: 10.6084/m9.figshare.c.3601460_d3
title: Additional file 1: Table S1. of Occupation, industry, and the risk of prostate cancer: a case-control study in Montréal, Canada

description: Associations between PCa risk (all PCa, low-grade and high-grade PCa) for ever employment and duration of employment, occupations. (XLS 702 kb)
DOI: 10.6084/m9.figshare.c.3601475_d1
title: Additional file 2: of GATA3-dependent cellular reprogramming requires activation-domain dependent recruitment of a chromatin remodeler

description: is a table listing associated genes in each ATAC-seq category. (XLSX 645 kb)
DOI: 10.6084/m9.figshare.c.3601481_d1
title: Additional file 1: Table S1. of MicroRNAs of Toxocara canis and their predicted functional roles

description: Primers for microRNA quantitative PCR. Table S2. Transcription profiles of known and novel microRNAs in Toxocara canis. Table S3. Gene ontology (GO) annotation and pathway enrichment analyses of microRNAs of Toxocara canis. Table S4. MicroRNAs differentially transcribed between male and female adults of Toxocara canis. Table S5. Sequence-dependent transcription between male and female adults of Toxocara canis. Table S6. GO annotation and pathway enrichment analysis of microRNAs differentially transcribed between male and female adults of Toxocara canis. Table S7. MicroRNA seed sequence families predicted to be involved in reproduction and larval development. Table S8. MicroRNAs predicted to be linked to host-parasite interactions. Table S9. MicroRNAs predicted to be drug targets or to have a link to drug resistance. (XLS 948 kb)
DOI: 10.6084/m9.figshare.c.3601475_d3
title: Additional file 3: of GATA3-dependent cellular reprogramming requires activation-domain dependent recruitment of a chromatin remodeler

description: is a table listing differentially expressed TFs. (XLSX 64 kb)
DOI: 10.5067/grvgctoka8tl
title: OCO-2 Gridded bias-corrected XCO2 and other select fields aggregated as Level 3 daily files V4
DOI: 10.6084/m9.figshare.c.3601499_d1
title: Additional file 1: of Dynamic interplay between locus-specific DNA methylation and hydroxymethylation regulates distinct biological pathways in prostate carcinogenesis

description: Co-occurrence of methylation and hydroxymethylation in pathway regulation. This file lists all pathways found to be co-occurrent between 5mC- and 5hmC-enriched regions within each cell line, providing the genomic features and gene lists associated with enrichment for each mark.
DOI: 10.5067/uuqh4i2qcsf5
title: Multi-Instrument Fused bias-corrected XCO2 and other select fields aggregated as Level 3 daily files V4
DOI: 10.6084/m9.figshare.c.3601490_d1
title: Additional file 1: of The NAD+ precursor nicotinamide riboside decreases exercise performance in rats

description: Raw data of time to exhaustion in the incremental swimming test for the control and the nicotinamide riboside group. (XLSX 9Â kb)
DOI: 10.15468/dl.rkxpzv
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aclees taiwanensis H.Kôno"
 ]
}

 The dataset includes 151 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032658-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5067/0qr48epn1bvr
title: OCO-2 Gridded bias-corrected XCO2, SIF, and other select fields aggregated as Level 3 daily files V4
DOI: 10.6084/m9.figshare.c.3601487_d2
title: MOESM4 of The influence of pregnancy on the pharmacokinetic properties of artemisinin combination therapy (ACT): a systematic review

description: Additional file 4. Data sheet. This additional file shows the original data as extracted from the included studies.
DOI: 10.6084/m9.figshare.c.3601484_d3
title: Additional file 3: of Risk-adjustment models for heart failure patientsâ   30-day mortality and readmission rates: the incremental value of clinical data abstracted from medical charts beyond hospital discharge record

description: Primary data analyzed for this study. (XLS 901 kb)
DOI: 10.6084/m9.figshare.c.3601502_d1
title: Additional file 6: of IRES-dependent translated genes in fungi: computational prediction, phylogenetic conservation and functional association

description: Phylogenetic tree. Phylogenetic tree used to select the non-redundant organisms. Bootstrap supporting values are indicated. (PNG 79 kb)
DOI: 10.6084/m9.figshare.c.3601574_d5
title: Additional file 10: of The first de novo transcriptome of pepino (Solanum muricatum): assembly, comprehensive analysis and comparison with the closely related species S. caripense, potato and tomato

description: List and features of SSRs. An Excel file that provides a list of the SSRs identified in the pepino transcripts, including information about the type and numbers of repetitions, and in which transcript they are present. (ZIP 73 kb)
DOI: 10.6084/m9.figshare.c.3601574_d7
title: Additional file 3: of The first de novo transcriptome of pepino (Solanum muricatum): assembly, comprehensive analysis and comparison with the closely related species S. caripense, potato and tomato

description: Solanum muricatum most expressed transcripts or unigenes (Fasta format zip comprised). The fasta file provides the list of the 75,832 most expressed single-copy S. muricatum transcripts. (ZIP 15757 kb)
DOI: 10.6084/m9.figshare.c.3601574_d9
title: Additional file 7: of The first de novo transcriptome of pepino (Solanum muricatum): assembly, comprehensive analysis and comparison with the closely related species S. caripense, potato and tomato

description: KEGG pathway annotation. A zip compressed file with a list of KEGGs pathways, graphics in png format, and a file with a comparison with KEGGs pathways of potato and tomato. (ZIP 4361 kb)
DOI: 10.6084/m9.figshare.c.3601574_d8
title: Additional file 2: of The first de novo transcriptome of pepino (Solanum muricatum): assembly, comprehensive analysis and comparison with the closely related species S. caripense, potato and tomato

description: Solanum muricatum assembled transcripts (Fasta format zip comprised). The fasta file provides the sequence of the 91,949 S. muricatum transcripts. (ZIP 20596 kb)
DOI: 10.6084/m9.figshare.c.3601574_d10
title: Additional file 4: of The first de novo transcriptome of pepino (Solanum muricatum): assembly, comprehensive analysis and comparison with the closely related species S. caripense, potato and tomato

description: Annotation results in GFF3. All the annotation results (ORFs, introns, descriptions, GO terms, orthologs and markers) provided in the standard format GFF3. (ZIP 5290 kb)
DOI: 10.6084/m9.figshare.c.3601574_d11
title: Additional file 6: of The first de novo transcriptome of pepino (Solanum muricatum): assembly, comprehensive analysis and comparison with the closely related species S. caripense, potato and tomato

description: GO annotation. A text file with the GO annotation for the whole S. muricatum unigene collection. (ZIP 1223 kb)