cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5vx06g0b
title: MassIVE MSV000097430 - Structural Heterogeneity of Proteoform-Ligand Complexes in AMP-Activated Protein Kinase Uncovered by Integrated Top-Down Mass Spectrometry
title: AMP-activated protein kinase (AMPK) is a heterotrimeric complex that serves as a master regulator of cellular metabolism, making it a prominent drug target for various diseases. Post-translational modifications (PTMs) and ligand binding significantly affect the activity and function of AMPK. However, the dynamic interplay of PTMs, non-covalent interactions, and higher-order structures of the kinase complex remain poorly understood. Herein, we report the structural heterogeneity of the AMPK complex arising from ligand binding and proteoforms, protein products derived from PTMs, alternative splicing, and genetic variants, using integrated native and denatured top-down mass spectrometry (TDMS). The fully intact AMPK heterotrimeric complex exhibits heterogeneity due to phosphorylation and multiple adenosine monophosphate (AMP) binding states. Native TDMS provides valuable insights into the higher-order structure of AMPK, subunit composition, and AMP binding stoichiometry, whilst denatured TDMS characterizes the proteoforms and localizes the phosphorylation site. This is the first study to structurally characterize AMPK proteoform-ligand complexes. Notably, using native TDMS and AlphaFold, we resolve a flexible regulatory region that has been difficult to visualize with traditional structural biology tools. These findings offer new perspectives on protein kinase regulation and establish a powerful framework for elucidating other kinase complexes.
DOI: 10.5281/zenodo.11449120
title: Machine learning-based pulse wave analysis for classification of circle of Willis topology: an in silico study with 30,618 virtual subjects (database: Missing ACoA)

description: This repository contains the dataset for the Missing ACoA described in the article with the same name. MATLAB and Python codes for post-processing the dataset and the code for training and testing all machine learning models using the open-source library TensorFlow 2.12, the Keras application programming interface, and the Scikit-learn Python package can be found in here (https://zenodo.org/records/12519322).
DOI: 10.5281/zenodo.11449121
title: Machine learning-based pulse wave analysis for classification of circle of Willis topology: an in silico study with 30,618 virtual subjects (database: Missing ACoA)

description: This repository contains the dataset for the Missing ACoA described in the article with the same name. MATLAB and Python codes for post-processing the dataset and the code for training and testing all machine learning models using the open-source library TensorFlow 2.12, the Keras application programming interface, and the Scikit-learn Python package can be found in here (https://zenodo.org/records/12519322).
DOI: 10.5281/zenodo.11573813
title: Machine learning-based pulse wave analysis for classification of circle of Willis topology: an in silico study with 30,618 virtual subjects (database: Missing PCA P1)

description: This repository contains the dataset for the Missing PCA P1 described in the article with the same name. MATLAB and Python codes for post-processing the dataset and the code for training and testing all machine learning models using the open-source library TensorFlow 2.12, the Keras application programming interface, and the Scikit-learn Python package can be found in here (https://zenodo.org/records/12519322).
DOI: 10.5281/zenodo.11573814
title: Machine learning-based pulse wave analysis for classification of circle of Willis topology: an in silico study with 30,618 virtual subjects (database: Missing PCA P1)

description: This repository contains the dataset for the Missing PCA P1 described in the article with the same name. MATLAB and Python codes for post-processing the dataset and the code for training and testing all machine learning models using the open-source library TensorFlow 2.12, the Keras application programming interface, and the Scikit-learn Python package can be found in here (https://zenodo.org/records/12519322).
DOI: 10.5281/zenodo.15079151
title: Dataset for the paper "A branch-and-cut algorithm for submodular interdiction games"

description: This dataset contains the code and the instances from the paper "A branch-and-cut algorithm for submodular interdiction games" https://doi.org/10.1287/ijoc.2022.1196 .

This research was funded in whole, or in part, by the Austrian Science Fund [Grant P 35160-N].
DOI: 10.5281/zenodo.15079152
title: Dataset for the paper "A branch-and-cut algorithm for submodular interdiction games"

description: This dataset contains the code and the instances from the paper "A branch-and-cut algorithm for submodular interdiction games" https://doi.org/10.1287/ijoc.2022.1196 .

This research was funded in whole, or in part, by the Austrian Science Fund [Grant P 35160-N].
DOI: 10.5281/zenodo.15079205
title: Observation of the diffusive Nambu-Goldstone mode of a non-equilibrium phase transition

description: Second-order phase transitions are governed by spontaneous symmetry break-ing, which yield collective excitations with a gapless spectrum called Nambu-Goldstone (NG) modes. While NG modes in conservative systems are propa-gating excitations, non-equilibrium phase transitions have been predicted tofeature a diffusive NG mode. We present the first experimental evidence of adiffusive NG mode in a non-equilibrium Bose-Einstein condensate of micro-cavity polaritons. The NG mode is observed as a spectral narrowing in thespectroscopic response of the condensate. Additionally, explicitly breaking thesymmetry causes the opening of a gap in the spectrum and the disappearanceof the NG mode. Our observations confirm the diffusive dynamics of the NGmode of non-equilibrium phase transitions and establish a promising frame-work to investigate fundamental questions in statistical mechanics.
DOI: 10.5281/zenodo.15079206
title: Observation of the diffusive Nambu-Goldstone mode of a non-equilibrium phase transition

description: Second-order phase transitions are governed by spontaneous symmetry break-ing, which yield collective excitations with a gapless spectrum called Nambu-Goldstone (NG) modes. While NG modes in conservative systems are propa-gating excitations, non-equilibrium phase transitions have been predicted tofeature a diffusive NG mode. We present the first experimental evidence of adiffusive NG mode in a non-equilibrium Bose-Einstein condensate of micro-cavity polaritons. The NG mode is observed as a spectral narrowing in thespectroscopic response of the condensate. Additionally, explicitly breaking thesymmetry causes the opening of a gap in the spectrum and the disappearanceof the NG mode. Our observations confirm the diffusive dynamics of the NGmode of non-equilibrium phase transitions and establish a promising frame-work to investigate fundamental questions in statistical mechanics.
DOI: 10.5281/zenodo.11473120
title: Machine learning-based pulse wave analysis for classification of circle of Willis topology: an in silico study with 30,618 virtual subjects (database:Missing PCoA)

description: This repository contains the dataset for the Missing PCoA described in the article with the same name. MATLAB and Python codes for post-processing the dataset and the code for training and testing all machine learning models using the open-source library TensorFlow 2.12, the Keras application programming interface, and the Scikit-learn Python package can be found in here (https://zenodo.org/records/12519322).
DOI: 10.5281/zenodo.11473121
title: Machine learning-based pulse wave analysis for classification of circle of Willis topology: an in silico study with 30,618 virtual subjects (database:Missing PCoA)

description: This repository contains the dataset for the Missing PCoA described in the article with the same name. MATLAB and Python codes for post-processing the dataset and the code for training and testing all machine learning models using the open-source library TensorFlow 2.12, the Keras application programming interface, and the Scikit-learn Python package can be found in here (https://zenodo.org/records/12519322).
DOI: 10.15468/dl.66khcy
title: Occurrence Download

description: A dataset containing 8018 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythrina herbacea L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8018 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000134-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xnjnm
title: Occurrence Download

description: A dataset containing 56508 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myiothlypis leucoblephara (Vieillot, 1817)"
 ]
}

 The dataset includes 56508 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000112-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11565239
title: Machine learning-based pulse wave analysis for classification of circle of Willis topology: an in silico study with 30,618 virtual subjects (database: Missing PCoAs)

description: This repository contains the dataset for the Missing PCoAs described in the article with the same name. MATLAB and Python codes for post-processing the dataset and the code for training and testing all machine learning models using the open-source library TensorFlow 2.12, the Keras application programming interface, and the Scikit-learn Python package can be found in here (https://zenodo.org/records/12519322).
DOI: 10.5281/zenodo.11565240
title: Machine learning-based pulse wave analysis for classification of circle of Willis topology: an in silico study with 30,618 virtual subjects (database: Missing PCoAs)

description: This repository contains the dataset for the Missing PCoAs described in the article with the same name. MATLAB and Python codes for post-processing the dataset and the code for training and testing all machine learning models using the open-source library TensorFlow 2.12, the Keras application programming interface, and the Scikit-learn Python package can be found in here (https://zenodo.org/records/12519322).
DOI: 10.5281/zenodo.11571907
title: Machine learning-based pulse wave analysis for classification of circle of Willis topology: an in silico study with 30,618 virtual subjects (database: Missing PCoA and PCA P1)

description: This repository contains the dataset for the Missing PCoA and PCA P1 described in the article with the same name. MATLAB and Python codes for post-processing the dataset and the code for training and testing all machine learning models using the open-source library TensorFlow 2.12, the Keras application programming interface, and the Scikit-learn Python package can be found in here (https://zenodo.org/records/12519322).
DOI: 10.5281/zenodo.11571906
title: Machine learning-based pulse wave analysis for classification of circle of Willis topology: an in silico study with 30,618 virtual subjects (database: Missing PCoA and PCA P1)

description: This repository contains the dataset for the Missing PCoA and PCA P1 described in the article with the same name. MATLAB and Python codes for post-processing the dataset and the code for training and testing all machine learning models using the open-source library TensorFlow 2.12, the Keras application programming interface, and the Scikit-learn Python package can be found in here (https://zenodo.org/records/12519322).
DOI: 10.15468/dl.h3wpk5
title: Occurrence Download

description: A dataset containing 6156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "TaxonKey is Alouatta seniculus (Linnaeus, 1766)",
 "Year 1970-2025"
 ]
}

 The dataset includes 6156 records from 204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000135-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txy9ey
title: Occurrence Download

description: A dataset containing 377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythrina lanata Rose, Erythrina lanata Taub., Erythrina lanata Taub. ex Gilg)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 377 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000136-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6j3ua
title: Occurrence Download

description: A dataset containing 447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythrina leptorhiza Moc. & Sessé ex DC., Erythrina leptorhiza Moc. & Sessé)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 447 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000138-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.5504334
title: Philosophy [IO Bijapur 181B]

description: Philosophy.

This manuscript is now IO Bijapur 181B in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 569 here with further notations and hyperlinks].


569.

B 181B. Size 9 in.; foll. 46. Nineteen lines in a page.

بحث التصديقات من شرح قاضى مبارك على سلم

The second and concluding part of the same Commentary.

Begins:قوله التصديقات الحكم منه اه توضيحه ان النسبة قد تحصل فى الذهن الخ.

Ends: قد تم الشرح بفضل من الله تبارك و تعالى يوم الثلثه (!) وقت الضحى احد و عشرين من شعبان المعظم سنة ١١٦٥ هجرية عليه افضل التحية فى ايام الذى كنت فى بلدة الاورنك آباد فى خدمت المرشد الدين حضرت والدى و مرشدى وولى نعمى حضرت سيد عبدالسلام صاحب ادام الله شفقته ... من يد احقر اضعف فخر الدين احمد غفر الله له الخ.

Written in an inelegant but legible Nasta’lîḳ hand.

Cat. 236, ix. 3 (?)
DOI: 10.5281/zenodo.5504335
title: Philosophy [IO Bijapur 181B]

description: Philosophy.

This manuscript is now IO Bijapur 181B in the India Office collections.

[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 569 here with further notations and hyperlinks].


569.

B 181B. Size 9 in.; foll. 46. Nineteen lines in a page.

بحث التصديقات من شرح قاضى مبارك على سلم

The second and concluding part of the same Commentary.

Begins:قوله التصديقات الحكم منه اه توضيحه ان النسبة قد تحصل فى الذهن الخ.

Ends: قد تم الشرح بفضل من الله تبارك و تعالى يوم الثلثه (!) وقت الضحى احد و عشرين من شعبان المعظم سنة ١١٦٥ هجرية عليه افضل التحية فى ايام الذى كنت فى بلدة الاورنك آباد فى خدمت المرشد الدين حضرت والدى و مرشدى وولى نعمى حضرت سيد عبدالسلام صاحب ادام الله شفقته ... من يد احقر اضعف فخر الدين احمد غفر الله له الخ.

Written in an inelegant but legible Nasta’lîḳ hand.

Cat. 236, ix. 3 (?)
DOI: 10.15468/dl.ppebg8
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythrina mexicana Krukoff)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 64 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000140-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vu6xgz
title: Occurrence Download

description: A dataset containing 243 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "TaxonKey is Ateles chamek (Humboldt, 1812)",
 "Year 1970-2025"
 ]
}

 The dataset includes 243 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000139-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phjbba
title: Occurrence Download

description: A dataset containing 188890 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is Psarocolius decumanus (Pallas, 1769)"
 ]
}

 The dataset includes 188890 records from 340 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000126-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9am66
title: Occurrence Download

description: A dataset containing 121786 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Coleção de Ictiologia do MZUSP"
 ]
}

 The dataset includes 121786 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000137-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cx7zsy
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythrina occidentalis Standl.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000142-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9qmdev
title: Occurrence Download

description: A dataset containing 3092 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythrina poeppigiana (Walp.) O.F.Cook, Erythrina poeppigiana (Walp.) Skeels)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3092 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000143-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2g7v7z
title: Occurrence Download

description: A dataset containing 372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "TaxonKey is Ateles belzebuth É.Geoffroy Saint-Hilaire, 1806",
 "Year 1970-2025"
 ]
}

 The dataset includes 372 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000144-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.52yufn
title: Occurrence Download

description: A dataset containing 1106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "TaxonKey is Anoura caudifer (E.Geoffroy, 1818)",
 "Year 1970-2025"
 ]
}

 The dataset includes 1106 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000145-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1153040.10fu
title: SH1153040.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1153042.10fu
title: SH1153042.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1153048.10fu
title: SH1153048.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.