cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jzj9c5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Damaliscus korrigum)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020065-250802193616735/datasets/export for details.
DOI: 10.15468/dl.3zjdbj
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Acanthorrhynchium papillatum"
 ]
}

 The dataset includes 856 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020066-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6uwsqg
title: Occurrence Download

description: A dataset containing 60402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Philohydor lictor)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 60402 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020037-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23729/fd-4e292510-045f-3d6f-84fc-1080b1f3a568
title: Soil porosity and organisms

description: This dataset is associated with Salminen et al. (2025) article entitled “Trophic interactions and deviation of microbial-based carbon in porosphere of arable fields”. Soil porosity was measured by using X-ray computed tomography, aminosugar concentrations as biomarkers of microbial necromass and densities of nematode feeding groups were measured at a depth of 10 cm from four arable fields in southern Finland (clay and loam soils).

A technical description of the data is provided in the readme.txt file.
DOI: 10.15468/dl.7ujbsx
title: Occurrence Download

description: A dataset containing 72740 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Croatia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2024-2025"
 ]
}

 The dataset includes 72740 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020048-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47rzj6
title: Occurrence Download

description: A dataset containing 1392 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Philydor fuscipenne)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1392 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020067-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9xeaq
title: Occurrence Download

description: A dataset containing 1466 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Damaliscus korrigum)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 1466 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020069-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16751747
title: Supplemental information for "Estimating infrared band strengths of amorphous interstellar ice analogues using density functional theory"

description: Dataset tables for all experimental and simulated IR spectra used in the manuscript titled "Estimating infrared band strengths of amorphous interstellar ice analogues using density functional theory" and published in the journal Astronomy and Astrophysics.
DOI: 10.5281/zenodo.16751748
title: Supplemental information for "Estimating infrared band strengths of amorphous interstellar ice analogues using density functional theory"

description: Dataset tables for all experimental and simulated IR spectra used in the manuscript titled "Estimating infrared band strengths of amorphous interstellar ice analogues using density functional theory" and published in the journal Astronomy and Astrophysics.
DOI: 10.5281/zenodo.16620089
title: Global excitatory synchrony: Ketamine induces global common-mode excitatory network oscillation by inhibiting key interneurons

description: Ketamine is a short-acting dissociative anesthetic commonly used in subanesthetic doses for its adjunct analgesic effects or as a treatment for refractory depression. In this study, we use the nematode C. elegans and pan-neuronal GCaMP imaging in 120 head neurons to study the neuronal mechanisms of subanesthetic doses of ketamine, reaching system-wide conclusions about ketamine’s impacts in a small yet complete nervous system. We recorded dynamics across multiple hours of continuous induction periods and subsequent shorter recordings to tease out distinct phases of ketamine-induced states. We identify two distinct anesthetic phases: an early/low dose state of hyperactive synchronized dynamics and late/higher dose state of system disorganization and spasticity of microscale motion. We also examined the individual activity of the NMDA-receptive interneuron AVA. AVA showed activity patterns that were decoupled from the rest of the system. These results are consistent with a hypothesis resulting from human EEG data that ketamine causes disinhibition by the suppression of key inhibitory interneurons. Our results identify functional differences between the low dose activity dynamics and those are higher doses, and demonstrate a mechanism of ketamine in complete nervous systems.

 

 

[V2] Add statistics code
DOI: 10.5281/zenodo.16753368
title: Global excitatory synchrony: Ketamine induces global common-mode excitatory network oscillation by inhibiting key interneurons

description: Ketamine is a short-acting dissociative anesthetic commonly used in subanesthetic doses for its adjunct analgesic effects or as a treatment for refractory depression. In this study, we use the nematode C. elegans and pan-neuronal GCaMP imaging in 120 head neurons to study the neuronal mechanisms of subanesthetic doses of ketamine, reaching system-wide conclusions about ketamine’s impacts in a small yet complete nervous system. We recorded dynamics across multiple hours of continuous induction periods and subsequent shorter recordings to tease out distinct phases of ketamine-induced states. We identify two distinct anesthetic phases: an early/low dose state of hyperactive synchronized dynamics and late/higher dose state of system disorganization and spasticity of microscale motion. We also examined the individual activity of the NMDA-receptive interneuron AVA. AVA showed activity patterns that were decoupled from the rest of the system. These results are consistent with a hypothesis resulting from human EEG data that ketamine causes disinhibition by the suppression of key inhibitory interneurons. Our results identify functional differences between the low dose activity dynamics and those are higher doses, and demonstrate a mechanism of ketamine in complete nervous systems.

 

 

[V2] Add statistics code
DOI: 10.14466/cefasdatahub.142
title: WaveNet near real-time data feed - from the past 48 hours

description: These data are a subset of the WaveNet near real time data feed, consisting of telemetry (automatically transmitted data) from the Cefas operated Directional Wave Riders (DWR) within UK waters over the past 48 hours. As this is a near-live feed, the data provided have not been fully quality checked or assured and hence should be used with due caution.

In operation since 2002, WaveNet collects and processes data from the Cefas-operated Datawell Directional Waverider buoys, tethered at strategic locations around the UK coastline. The WaveNet system also gathers wave data from a variety of third party platforms and programmes (industry and public sector-funded), all of which are freely available for visualisation on the WaveNet website (https://www.cefas.co.uk/data-and-publications/wavenet/).

Cefas sends the wave data to the Met Office (to help improve the wave and tidal surge model) and the National Flood Forecasting Service (UKCFF). Regional flood forecasters, local authorities and other stakeholders use the near-real time data from the buoys and the model predictions to provide better advice, guidance and warnings to emergency responders and communities about imminent coastal flood risk.
DOI: 10.15468/dl.ptvrfa
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Acanthorrhynchium papillatum"
 ]
}

 The dataset includes 856 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020070-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yk9gkd
title: Occurrence Download

description: A dataset containing 10929 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neotis ludwigii"
 ]
}

 The dataset includes 10929 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020071-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mj2xha
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Paraguay",
 "TaxonKey is Philodryas psammophidea"
 ]
}

 The dataset includes 12 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020072-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16750182
title: Genomic characterization of Peruvian Creole goats: Insights into Population Structure and Runs of Homozygosity

description: AbstractPeruvian Creole goats (PCGs) represent a unique genetic resource shaped by adaptation to diverse environments and traditional breeding practices. In this study, we performed a genomic analysis of six regional populations (Ancash, Ica, Lambayeque, Lima, Piura, and Tumbes) using high-density SNP genotype data. Principal component analysis revealed a moderate genetic structure, with the Ica population showing clear separation and northern populations exhibiting overlap. Runs of homozygosity were predominantly short, and specific regions on chromosome 6 were shared across populations. Inbreeding coefficients were generally low, with Ancash showing the highest values. Linkage disequilibrium decayed rapidly over genetic distance, especially in Piura, indicating higher genetic diversity. Estimates of effective population size revealed decreasing trends across populations, with Piura maintaining the largest recent population size. These findings offer valuable insights into the population structure of Peruvian Creole goats, providing guidance for conservation and sustainable breeding efforts.
DOI: 10.5281/zenodo.16750183
title: Genomic characterization of Peruvian Creole goats: Insights into Population Structure and Runs of Homozygosity

description: AbstractPeruvian Creole goats (PCGs) represent a unique genetic resource shaped by adaptation to diverse environments and traditional breeding practices. In this study, we performed a genomic analysis of six regional populations (Ancash, Ica, Lambayeque, Lima, Piura, and Tumbes) using high-density SNP genotype data. Principal component analysis revealed a moderate genetic structure, with the Ica population showing clear separation and northern populations exhibiting overlap. Runs of homozygosity were predominantly short, and specific regions on chromosome 6 were shared across populations. Inbreeding coefficients were generally low, with Ancash showing the highest values. Linkage disequilibrium decayed rapidly over genetic distance, especially in Piura, indicating higher genetic diversity. Estimates of effective population size revealed decreasing trends across populations, with Piura maintaining the largest recent population size. These findings offer valuable insights into the population structure of Peruvian Creole goats, providing guidance for conservation and sustainable breeding efforts.
DOI: 10.15468/dl.vtwsnq
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAD5344"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020073-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16751367
title: Wind data in China from 2019 to 2023
DOI: 10.5281/zenodo.16751368
title: Wind data in China from 2019 to 2023
DOI: 10.15468/dl.7qp92g
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Observations of the emergence of Fijian cicadas in September 2017"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020076-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.war9db
title: Occurrence Download

description: A dataset containing 1825 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Silurus asotus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1825 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020075-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16753301
title: Supplementary Table 1: Abundance of Detected Mitochondrial Proteins
DOI: 10.5281/zenodo.16753302
title: Supplementary Table 1: Abundance of Detected Mitochondrial Proteins
DOI: 10.17044/scilifelab.27688668
title: Flame-made nanoparticles for magnetic hyperthermia and MRI in colorectal cancer theranostics

description: Magnetic hyperthermia therapy using superparamagnetic iron oxide nanoparticles (SPIONs) offers a promising strategy for treating cancers resistant to chemo- and radiotherapy. However, oral delivery of SPIONs for localized treatment of gastrointestinal cancers has not been widely explored. Here, we report the development of methoxy polyethylene glycol (mPEG) functionalized SPIONs (mPEG-Mn0.6Zn0.4Fe2O4) engineered for oral administration with combined theranostic functionalities for magnetic hyperthermia treatment and magnetic resonance imaging (MRI) in colorectal cancer (CRC). The SPIONs achieved consistent heating performance in biorelevant colonic environments, exceeding a 5 °C temperature increase within 10 min under an alternating magnetic field (AMF). They also demonstrated superior r2 relaxivity compared to γ-Fe2O3, highlighting their potential as effective T2 MRI contrast agents. In vitro studies using CRC SW480 and Caco-2 cell lines assessed nanoparticle cytotoxicity, cellular uptake, and magnetic hyperthermia efficacy in both upright and inverted cell culture configurations. Magnetic hyperthermia induced significant CRC cell death in vitro, particularly in upright configurations, attributed to enhanced localized heating caused by nanoparticle sedimentation and enhanced SPION contact with cell surfaces. This emphasizes the importance of in vitro experimental parameters such as cell line, configuration, and AMF exposure time for systematic optimization of theranostic SPIONs during preclinical development. Finally, in vivo studies using a colorectal tumor xenograft mouse model demonstrated a marked therapeutic effect of magnetic hyperthermia by intratumorally injected SPIONs. The tumor volume was reduced by 63% following a single 20-minute AMF exposure. These findings demonstrate the potential of mPEG-Mn0.6Zn0.4Fe2O4 nanoparticles as a promising platform for non-invasive, image-guided magnetic hyperthermia therapy in CRC theranostics.
DOI: 10.17044/scilifelab.27688668.v1
title: Flame-made nanoparticles for oral delivery in magnetic hyperthermia and MRI for colorectal cancer theranostics

description: Magnetic hyperthermia therapy­ induced with superparamagnetic iron oxide nanoparticles (SPIONs) is a promising alternative for the treatment of chemo- and radiotherapy resistant-cancers. However, SPIONs in clinical use for magnetic hyperthermia rely on injecting high doses directly to the tumor. Oral delivery of SPIONs to locally treat gastrointestinal cancers has not been widely explored. In this study, we developed a physically stable methoxy polyethylene glycol (mPEG) functionalized SPION (mPEG-Mn<sub>0.6</sub>Zn<sub>0.4</sub>Fe<sub>2</sub>O<sub>4</sub>) intended for oral delivery. By combining localized magnetic hyperthermia treatment and magnetic resonance imaging (MRI), these nanoparticles could be used as a theranostic agent against colorectal cancer (CRC). CRC cell lines SW480 and Caco-2 were used to evaluate particle cytotoxicity, uptake, and magnetic hyperthermia outcomes. To gain a comprehensive understanding of the therapeutic effect of the SPIONs, <i>in vitro</i> cell studies were conducted in both inverted and upright cell configurations. The mPEG-Mn<sub>0.6</sub>Zn<sub>0.4</sub>Fe<sub>2</sub>O<sub>4 </sub>nanoparticles exhibited excellent and consistent heating performance in biosimilar colonic environments, with a more than 5°C increase within 10 min under an alternating magnetic field (AMF). The <i>r2</i> relaxivity of the mPEG-Mn<sub>0.6</sub>Zn<sub>0.4</sub>Fe<sub>2</sub>O<sub>4 </sub>was stronger than that of the g-Fe<sub>2</sub>O<sub>3</sub> nanoparticles rendering the former<sub> </sub>a better T2 MRI contrast agent. Magnetic hyperthermia in CRC cells showed a significant cell death in the upright configuration compared to the inverted one. This could be attributed to a higher extent of direct nanoparticle-cell contact in the former caused by nanoparticle sedimentation onto the cell surface. Overall, the magnetic hyperthermia outcomes were found sensitive to experimental parameters such as cell lines, cell configurations, and AMF exposure times and should be systematically considered during preclinical development of SPIONs for new biomedical applications.
DOI: 10.17044/scilifelab.27688668.v2
title: Flame-made nanoparticles for magnetic hyperthermia and MRI in colorectal cancer theranostics

description: Magnetic hyperthermia therapy using superparamagnetic iron oxide nanoparticles (SPIONs) offers a promising strategy for treating cancers resistant to chemo- and radiotherapy. However, oral delivery of SPIONs for localized treatment of gastrointestinal cancers has not been widely explored. Here, we report the development of methoxy polyethylene glycol (mPEG) functionalized SPIONs (mPEG-Mn0.6Zn0.4Fe2O4) engineered for oral administration with combined theranostic functionalities for magnetic hyperthermia treatment and magnetic resonance imaging (MRI) in colorectal cancer (CRC). The SPIONs achieved consistent heating performance in biorelevant colonic environments, exceeding a 5 °C temperature increase within 10 min under an alternating magnetic field (AMF). They also demonstrated superior r2 relaxivity compared to γ-Fe2O3, highlighting their potential as effective T2 MRI contrast agents. In vitro studies using CRC SW480 and Caco-2 cell lines assessed nanoparticle cytotoxicity, cellular uptake, and magnetic hyperthermia efficacy in both upright and inverted cell culture configurations. Magnetic hyperthermia induced significant CRC cell death in vitro, particularly in upright configurations, attributed to enhanced localized heating caused by nanoparticle sedimentation and enhanced SPION contact with cell surfaces. This emphasizes the importance of in vitro experimental parameters such as cell line, configuration, and AMF exposure time for systematic optimization of theranostic SPIONs during preclinical development. Finally, in vivo studies using a colorectal tumor xenograft mouse model demonstrated a marked therapeutic effect of magnetic hyperthermia by intratumorally injected SPIONs. The tumor volume was reduced by 63% following a single 20-minute AMF exposure. These findings demonstrate the potential of mPEG-Mn0.6Zn0.4Fe2O4 nanoparticles as a promising platform for non-invasive, image-guided magnetic hyperthermia therapy in CRC theranostics.
DOI: 10.15468/dl.fwt92n
title: Occurrence Download

description: A dataset containing 1149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelophylax nigromaculatus",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1149 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020077-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.