cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0080541.10fu
title: SH0080541.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.snc853
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Populus nigra L.",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081440-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4d36n
title: Occurrence Download

description: A dataset containing 370334 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Leicestershire and Rutland Environmental Records Centre records 2000-2009"
 ]
}

 The dataset includes 370334 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081434-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzckjg
title: Occurrence Download

description: A dataset containing 1018 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Indonesia",
 "DatasetKey is EOD – eBird Observation Dataset",
 "GbifRegion is Asia",
 "IucnRedListCategory is CR",
 "PublishingCountry is Indonesia"
 ]
}

 The dataset includes 1018 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081446-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvfvab
title: Occurrence Download

description: A dataset containing 31467 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Atlas of Mammals in Ireland 2010-2015"
 ]
}

 The dataset includes 31467 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081444-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7r4cmq
title: Occurrence Download

description: A dataset containing 1376 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astilbe grandis Stapf ex E.H.Wilson"
 ]
}

 The dataset includes 1376 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081447-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqekcx
title: Occurrence Download

description: A dataset containing 3025 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingOrg is 862f7ec3-3134-4dce-ab5a-03c81f54bd72",
 {
 "and" : [
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "Country is Uruguay"
 ]
 }
 ]
 },
 "StateProvince is one of (colonia)"
 ]
}

 The dataset includes 3025 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081448-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64yngz
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salix caprea L.",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 55 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081450-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7sffm
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salix caprea L.",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081449-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8aynkx
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salix caprea L.",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081451-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15482/usda.adc/28317536
title: Data from: Detection of live Shiga toxin-producing Escherichia coli with long-read sequencing

description: A requirement of any foodborne pathogen testing method is that it only detects live bacteria. Ethidium monoazide (EMA) and propidium monoazide (PMA) are dyes that penetrate the membranes of dead cells and form cross-linkages in the DNA, which prevents its amplification in PCR. This study investigated whether treatment with EMA or PMA would inhibit sequencing of DNA from dead <i>Escherichia coli</i>. Range finding experiments with qPCR were conducted to determine the optimal concentrations of EMA and PMA needed to inhibit amplification of DNA from dead cells while not influencing live cells. An EMA concentration that differentiated between live and dead cells could not be established. However, a PMA concentration of 25 µM effectively prevented qPCR amplification of DNA from dead <i>E. coli</i> while not impacting the amplification of live <i>E. coli</i> DNA. Sequencing experiments were conducted with PMA-treated live, untreated live, PMA-treated dead, and untreated dead <i>E. coli</i>. There were no significant differences in the detection of virulence genes of interest between the PMA-treated live, untreated live, and untreated dead <i>E. coli</i>. However, no DNA sequencing data was obtained from the PMA-treated dead <i>E. coli</i>. These results suggest that PMA could be incorporated into sample preparation methods prior to sequencing to selectively detect live cells of foodborne pathogens.
DOI: 10.15482/usda.adc/28317536.v1
title: Data from: Detection of live Shiga toxin-producing Escherichia coli with long-read sequencing

description: A requirement of any foodborne pathogen testing method is that it only detects live bacteria. Ethidium monoazide (EMA) and propidium monoazide (PMA) are dyes that penetrate the membranes of dead cells and form cross-linkages in the DNA, which prevents its amplification in PCR. This study investigated whether treatment with EMA or PMA would inhibit sequencing of DNA from dead <i>Escherichia coli</i>. Range finding experiments with qPCR were conducted to determine the optimal concentrations of EMA and PMA needed to inhibit amplification of DNA from dead cells while not influencing live cells. An EMA concentration that differentiated between live and dead cells could not be established. However, a PMA concentration of 25 µM effectively prevented qPCR amplification of DNA from dead <i>E. coli</i> while not impacting the amplification of live <i>E. coli</i> DNA. Sequencing experiments were conducted with PMA-treated live, untreated live, PMA-treated dead, and untreated dead <i>E. coli</i>. There were no significant differences in the detection of virulence genes of interest between the PMA-treated live, untreated live, and untreated dead <i>E. coli</i>. However, no DNA sequencing data was obtained from the PMA-treated dead <i>E. coli</i>. These results suggest that PMA could be incorporated into sample preparation methods prior to sequencing to selectively detect live cells of foodborne pathogens.
DOI: 10.15468/dl.69t4cz
title: Occurrence Download

description: A dataset containing 223693 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Leicestershire and Rutland Environmental Records Centre records 2015-2019"
 ]
}

 The dataset includes 223693 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081443-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15776310
title: Data for paper "Mathematical modelling of drying capillary porous media"

description: The attached files contain the data for the paper "Mathematical modelling of drying capillary porous media" by Ellen Luckins, accepted for publication in JFM (June 2025). See the READ ME file for a description of the data.
DOI: 10.5281/zenodo.15776311
title: Data for paper "Mathematical modelling of drying capillary porous media"

description: The attached files contain the data for the paper "Mathematical modelling of drying capillary porous media" by Ellen Luckins, accepted for publication in JFM (June 2025). See the READ ME file for a description of the data.
DOI: 10.15468/dl.f4wp2b
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salix caprea L.",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 149 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081452-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dz9ae6
title: Occurrence Download

description: A dataset containing 5086 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Indonesia",
 "DatasetKey is EOD – eBird Observation Dataset",
 "GbifRegion is Asia",
 "IucnRedListCategory is EN",
 "PublishingCountry is Indonesia"
 ]
}

 The dataset includes 5086 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081453-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15482/usda.adc/26026723
title: Data from: Honey bee immune response to trace concentrations of clothianidin goes beyond the macronutrients found in artificial diets

description: Honey bees (<i>Apis mellifera</i>) often encounter a variety of stressors in their environment, including poor nutrition and pesticides. These stressors interact and can be exacerbated in large-scale agroecosystems. We investigated how diets varying in macronutrient ratios can affect nurse bee susceptibility to pesticide stressors. Nurse bees were fed trace concentrations of clothianidin (CLO), a neonicotinoid insecticide known to have sublethal and lethal effects on honey bees, after newly emerged bees were given diets varying in proteins and lipids, a natural pollen diet, or sucrose solution diet. Bees given pollen had improved longevity, physiology, enzyme activity, and gene expression related to pesticide detoxification. The artificial diets helped improve bee health and physiology but did little to promote bee detoxification enzymes and genes. There was no effect of the trace CLO treatments on its own, but there was an interactive effect between our higher CLO treatment and poor nutrition on bee longevity and vitellogenin expression. Our results suggest that 1.) exposure to even trace concentrations of CLO can interact with poor nutrition to undermine adult bee health and 2.) macronutrients in artificial diets can help promote bee physiology, but other nutrients in pollen, such as potentially phytochemicals, are more directly linked honey bee tolerance to pesticide stress.<br>This work was supported by United States Department of Agriculture, Agricultural Research Service, Research Project No. 6066-21000-001-000-D, Ecological Assessment and Mitigation Strategies to Reduce the Risks of Bees to Stressors in Southern Crop Ecosystems.
DOI: 10.15482/usda.adc/26026723.v2
title: Data from: Honey bee immune response to trace concentrations of clothianidin goes beyond the macronutrients found in artificial diets

description: Honey bees (<i>Apis mellifera</i>) often encounter a variety of stressors in their environment, including poor nutrition and pesticides. These stressors interact and can be exacerbated in large-scale agroecosystems. We investigated how diets varying in macronutrient ratios can affect nurse bee susceptibility to pesticide stressors. Nurse bees were fed trace concentrations of clothianidin (CLO), a neonicotinoid insecticide known to have sublethal and lethal effects on honey bees, after newly emerged bees were given diets varying in proteins and lipids, a natural pollen diet, or sucrose solution diet. Bees given pollen had improved longevity, physiology, enzyme activity, and gene expression related to pesticide detoxification. The artificial diets helped improve bee health and physiology but did little to promote bee detoxification enzymes and genes. There was no effect of the trace CLO treatments on its own, but there was an interactive effect between our higher CLO treatment and poor nutrition on bee longevity and vitellogenin expression. Our results suggest that 1.) exposure to even trace concentrations of CLO can interact with poor nutrition to undermine adult bee health and 2.) macronutrients in artificial diets can help promote bee physiology, but other nutrients in pollen, such as potentially phytochemicals, are more directly linked honey bee tolerance to pesticide stress.<br>This work was supported by United States Department of Agriculture, Agricultural Research Service, Research Project No. 6066-21000-001-000-D, Ecological Assessment and Mitigation Strategies to Reduce the Risks of Bees to Stressors in Southern Crop Ecosystems.
DOI: 10.15482/usda.adc/26026723.v1
title: Data from: Honey bee immune response to sublethal concentrations of clothianidin goes beyond the macronutrients found in artificial diets

description: Honey bees (<em>Apis mellifera</em>) often encounter a variety of stressors in their environment, including poor nutrition and pesticides. These stressors interact and can be exacerbated in large-scale agroecosystems. We investigated how diets varying in macronutrient ratios can affect nurse bee susceptibility to pesticide stressors. Nurse bees were fed sublethal concentrations of clothianidin (CLO), a neonicotinoid insecticide known to have sublethal and lethal effects on honey bees, after newly emerged bees were given diets varying in proteins and lipids, a natural pollen diet, or no diet. Bees given pollen had improved longevity, physiology, enzyme activity, and gene expression related to pesticide detoxification. The artificial diets helped improve bee health and physiology but did little to promote bee detoxification enzymes and genes. There was no effect of the sublethal CLO treatments on its own, but there was an interactive effect between our high CLO treatment and nutrition on bee longevity and vitellogenin expression. Honey bees given pollen upregulated of detoxification genes and had higher enzyme activity related to pesticide metabolism. Our results suggest that macronutrients in artificial diets can help promote bee physiology, but other nutrients in pollen, such as potentially phytochemicals, are more directly linked honey bee tolerance to pesticide stress.
<br>
This work was supported by United States Department of Agriculture, Agricultural Research Service, Research Project No. 6066-21000-001-000-D, Ecological Assessment and Mitigation Strategies to Reduce the Risks of Bees to Stressors in Southern Crop Ecosystems.
DOI: 10.5517/ccdc.csd.cc2lxym3
title: CCDC 2411106: Experimental Crystal Structure Determination

description: Related Article: Zhi-Ao Li, Ke-Lin Zhu, Nai-Te Yao, Jiaqi Liang, Yi-Ling Shang, Ye Zhang, Han-Yuan Gong|2025|Chemical Science|16|9978|doi:10.1039/D5SC01498K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l69ch
title: CCDC 2389336: Experimental Crystal Structure Determination

description: Related Article: Mads B. Amdisen, Young-Su Lee, Torben R. Jensen|2025|Inorg.Chem.|64|3696|doi:10.1021/acs.inorgchem.4c04287
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.kcuear
title: Occurrence Download

description: A dataset listing the 912 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingOrg is 862f7ec3-3134-4dce-ab5a-03c81f54bd72",
 {
 "and" : [
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "Country is Uruguay"
 ]
 }
 ]
 },
 "StateProvince is one of (colonia)"
 ]
}

 The dataset's 912 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081445-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15482/usda.adc/28672916
title: Data from: Acceptance of fire ant baits by nontarget ants in Florida and California

description: Invasive red imported fire ant, <i>Solenopsis invicta</i>, infestations can be cleared from areas with baits, but these areas are often reinfested. To facilitate biotic resistance strategies to reinfestation, acceptance of commercial fire ant baits by nontarget ants was determined in Alachua County Florida and in Riverside County California. Presented are counts of four ant species that accepted baits among eight baits containing seven active ingredients in Florida. Also included are counts of four ant species in California that accepted baits among five of the fire ant baits. Tests were conducted in the field at nests or on actively trailing ants, for all species except for <i>Monomorium floricola</i>, which were from laboratory reared colonies. Zero or low counts of ants for a particular bait implies non-acceptance of that bait. Non-acceptance of a bait by several nontarget ant species would indicate which bait(s) exhibited more specificity to fire ants. None of the fire ant bait products tested exhibited non-acceptance by all the nontarget ant species evaluated. To conserve nontarget ants, fire ant bait selection will need to consider the nontarget ants present at individual sites and specific bait(s), that are least accepted by these ants.
DOI: 10.15482/usda.adc/28672916.v1
title: Data from: Acceptance of fire ant baits by nontarget ants in Florida and California

description: Invasive red imported fire ant, <i>Solenopsis invicta</i>, infestations can be cleared from areas with baits, but these areas are often reinfested. To facilitate biotic resistance strategies to reinfestation, acceptance of commercial fire ant baits by nontarget ants was determined in Alachua County Florida and in Riverside County California. Presented are counts of four ant species that accepted baits among eight baits containing seven active ingredients in Florida. Also included are counts of four ant species in California that accepted baits among five of the fire ant baits. Tests were conducted in the field at nests or on actively trailing ants, for all species except for <i>Monomorium floricola</i>, which were from laboratory reared colonies. Zero or low counts of ants for a particular bait implies non-acceptance of that bait. Non-acceptance of a bait by several nontarget ant species would indicate which bait(s) exhibited more specificity to fire ants. None of the fire ant bait products tested exhibited non-acceptance by all the nontarget ant species evaluated. To conserve nontarget ants, fire ant bait selection will need to consider the nontarget ants present at individual sites and specific bait(s), that are least accepted by these ants.
DOI: 10.15468/dl.cmxzd8
title: Occurrence Download

description: A dataset containing 88293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Megaceryle maxima (Pallas, 1769)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 88293 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081439-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.