cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8021345
title: Table 2. Studies on psychiatric side effects of fluoroquinolones. The risk of bias and study quality assessed with the Effective Public Health Practice Project's Quality Assessment Tool for Quantitative Studies (QATQS) was presented as the global rating for each publication (3 – weak).

description: Studies on psychiatric side effects of fluoroquinolones. The risk of bias and study quality assessed with the Effective Public Health Practice Project’s Quality Assessment Tool for Quantitative Studies (QATQS) was presented as the global rating for each publication (3 – weak).
DOI: 10.6084/m9.figshare.23465612
title: Original data Publish.rar

description: It includes fish culture data, sampling data, experimental detection data and transcriptomic data.
DOI: 10.6084/m9.figshare.23465612.v1
title: Original data Publish.rar

description: It includes fish culture data, sampling data, experimental detection data and transcriptomic data.
DOI: 10.5281/zenodo.7969780
title: TFM--TUs-outputs

description: Output files of the TUs used in my master's thesis. TUs used for the trainning of Bicleaner model
DOI: 10.5281/zenodo.7969781
title: TFM--TUs-outputs

description: Output files of the TUs used in my master's thesis. TUs used for the trainning of Bicleaner model
DOI: 10.5281/zenodo.8021024
title: TFM--TUs-outputs

description: Output files of the TUs used in my master's thesis. TUs used for the trainning of Bicleaner model
DOI: 10.5281/zenodo.8021347
title: TFM--TUs-outputs

description: Output files of the TUs used in my master's thesis. TUs used for the trainning of Bicleaner model
DOI: 10.5281/zenodo.8021402
title: amazona_arausiaca_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8021401
title: amazona_arausiaca_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8021414
title: anas_bernieri_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8021413
title: anas_bernieri_spades_01.fasta.gz

description: .
DOI: 10.6084/m9.figshare.23464106
title: <em><strong>In Vivo </strong></em><strong>Skeletal Muscle Oxidative Capacity is Lower Following Sustained Isometric Contractions Compared to Dynamic Contractions</strong>

description: Dataset for study: <em><strong>In Vivo </strong></em><strong>Skeletal Muscle Oxidative Capacity is Lower Following Sustained Isometric Contractions Compared to Dynamic Contractions</strong>
DOI: 10.6084/m9.figshare.23464106.v1
title: <em><strong>In Vivo </strong></em><strong>Skeletal Muscle Oxidative Capacity is Lower Following Sustained Isometric Contractions Compared to Dynamic Contractions</strong>

description: Dataset for study: <em><strong>In Vivo </strong></em><strong>Skeletal Muscle Oxidative Capacity is Lower Following Sustained Isometric Contractions Compared to Dynamic Contractions</strong>
DOI: 10.6073/pasta/c46b291bb2b46d4c7ca06964529ed769
title: Jornada Basin LTER: Wireless meteorological station at NPP P-SMAL site: 30-minute summary data: 2017 - ongoing

description: 30-minute summary data at NPP P-SMAL met station. Average air temperature, relative humidity, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP P-SMAL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.26302/sshade/experiment_rc_20200511_000
title: VIS-NIR reflectance spectra collected during low-temperature and near-vacuum sublimation of spherical salty ice particles (67 µm average diameter) produced by freezing droplets of solutions of Na2SO4 with three different concentrations

description: Spherical ice particles are produced by spraying droplets of salt solution into liquid nitrogen with the SPIPA-B setup. Centimeter-thick samples made of these particles are then introduced in the SCITEAS-2 simulations chamber and their slow sublimation at low temperature and in secondary vacuum is followed for several tens of hours by VIS-NIR hyperspectral imaging.
DOI: 10.26302/sshade/experiment_rc_20200513_000
title: VIS-NIR reflectance spectra collected during low-temperature and near-vacuum sublimation of spherical salty ice particles (67 µm average diameter) produced by freezing droplets of solutions of MgCl2 with three different concentrations

description: Spherical ice particles are produced by spraying droplets of salt solution into liquid nitrogen with the SPIPA-B setup. Centimeter-thick samples made of these particles are then introduced in the SCITEAS-2 simulations chamber and their slow sublimation at low temperature and in secondary vacuum is followed for several tens of hours by VIS-NIR hyperspectral imaging.
DOI: 10.26302/sshade/experiment_rc_20200508_000
title: VIS-NIR reflectance spectra collected during low-temperature and near-vacuum sublimation of spherical salty ice particles (67 µm average diameter) produced by freezing droplets of solutions of MgSO4 with three different concentrations

description: Spherical ice particles are produced by spraying droplets of salt solution into liquid nitrogen with the SPIPA-B setup. Centimeter-thick samples made of these particles are then introduced in the SCITEAS-2 simulations chamber and their slow sublimation at low temperature and in secondary vacuum is followed for several tens of hours by VIS-NIR hyperspectral imaging.
DOI: 10.26302/sshade/experiment_rc_20200506_000
title: VIS-NIR reflectance spectra collected during low-temperature and near-vacuum sublimation of spherical salty ice particles (67 µm average diameter) produced by freezing droplets of solutions of NaCl with three different concentrations

description: Spherical ice particles are produced by spraying droplets of salt solution into liquid nitrogen with the SPIPA-B setup. Centimeter-thick samples made of these particles are then introduced in the SCITEAS-2 simulations chamber and their slow sublimation at low temperature and in secondary vacuum is followed for several tens of hours by VIS-NIR hyperspectral imaging.
DOI: 10.6073/pasta/32fb80693b823f1b4dc4214885a9febe
title: SBC LTER: Ocean: Currents and Biogeochemistry: Moored CTD and ADCP data from Naples Reef Mooring (NAP), ongoing since 2001

description: ADCP (Currents), CTD (Hydrography) and Optics data (Fluorescence, Beam Attenuation and Volume Scattering Function) were collected at Naples Reef in the Santa Barbara Channel (site ID: NAP). Data have been interpolated to a 20 minute interval. ADCP data are binned at a 1.0 meter interval, measured as height from the bottom to a maximum of 16 bins. All bins may not be filled, and in some cases, data from bins technically above the surface are included. VSF data are available at angles, 100, 125 and 150 degrees. CTD parameters include Pressure, Temperature, Conductivity, Salinity, Density and Fluorescence. The CTD array is located approximately 4.5 meters from the surface, and there are additional temperature thermistors near the CTD array, at the bottom, and mid way between these two.
DOI: 10.26302/sshade/experiment_rc_20200109_000
title: VIS-NIR reflectance spectra collected during low-temperature and near-vacuum sublimation of compact slabs of salty ice produced by slowly freezing solutions of MgCl2 with three different concentrations

description: Compact slabs of salty (MgCl2) ice are produced by slowly freezing small volumes of salt solutions into a laboratory freezer at 230K. The samples are then introduced in the SCITEAS-2 simulations chamber and their slow sublimation at low temperature and in secondary vacuum is followed for several tens of hours by VIS-NIR hyperspectral imaging.
DOI: 10.26302/sshade/experiment_rc_20191124_000
title: VIS-NIR reflectance spectra collected during low-temperature and near-vacuum sublimation of compact slabs of salty ice produced by slowly freezing solutions of Na2SO4 with three different concentrations

description: Compact slabs of salty (Na2SO4) ice are produced by slowly freezing small volumes of salt solutions into a laboratory freezer at 230K. The samples are then introduced in the SCITEAS-2 simulations chamber and their slow sublimation at low temperature and in secondary vacuum is followed for several tens of hours by VIS-NIR hyperspectral imaging.
DOI: 10.26302/sshade/experiment_rc_20191112_000
title: VIS-NIR reflectance spectra collected during low-temperature and near-vacuum sublimation of compact slabs of salty ice produced by slowly freezing solutions of MgSO4 with three different concentrations

description: Compact slabs of salty (MgSO4) ice are produced by slowly freezing small volumes of salt solutions into a laboratory freezer at 230K. The samples are then introduced in the SCITEAS-2 simulations chamber and their slow sublimation at low temperature and in secondary vacuum is followed for several tens of hours by VIS-NIR hyperspectral imaging.
DOI: 10.26302/sshade/experiment_rc_20191104_000
title: VIS-NIR reflectance spectra collected during low-temperature and near-vacuum sublimation of compact slabs of salty ice produced by slowly freezing solutions of NaCl with three different concentrations

description: Compact slabs of salty ice are produced by slowly freezing small volumes of salt solutions into a laboratory freezer at 230K. The samples are then introduced in the SCITEAS-2 simulations chamber and their slow sublimation at low temperature and in secondary vacuum is followed for several tens of hours by VIS-NIR hyperspectral imaging.
DOI: 10.6073/pasta/91ecbaa6d8378ac02bfb0dd0e9896c01
title: Jornada Basin LTER: Wireless meteorological station at NPP M-WELL site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP M-WELL met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP M-WELL site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.17909/zpy3-w565
title: HST COS data analyzed in Klimenko et al. 2023
DOI: 10.5281/zenodo.8021426
title: amazona_tucumana_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8021425
title: amazona_tucumana_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8021411
title: Blood-based epigenome-wide analyses on the prevalence and incidence of nineteen common disease states

description: Epigenome-wide association studies (EWAS) were performed using whole-blood methylation and self-report disease data (prevalent disease) for 14 conditions at the study baseline of Generation Scotland. Furthermore, EWAS were performed on 19 incident conditions using electronic health record linkage to ascertain diagnoses following the study baseline. Basic and fully-adjusted models were considered, resulting in 66 models in total. medRxiv 2023.01.10.23284387; doi: https://doi.org/10.1101/2023.01.10.23284387
DOI: 10.5281/zenodo.8021410
title: Blood-based epigenome-wide analyses on the prevalence and incidence of nineteen common disease states

description: Epigenome-wide association studies (EWAS) were performed using whole-blood methylation and self-report disease data (prevalent disease) for 14 conditions at the study baseline of Generation Scotland. Furthermore, EWAS were performed on 19 incident conditions using electronic health record linkage to ascertain diagnoses following the study baseline. Basic and fully-adjusted models were considered, resulting in 66 models in total. medRxiv 2023.01.10.23284387; doi: https://doi.org/10.1101/2023.01.10.23284387
DOI: 10.6073/pasta/77b96f9c4b63d8f8bbd4ed0f80728195
title: Jornada Basin LTER: Wireless meteorological station at NPP M-WELL site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at NPP M-WELL met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes at an automated meteorological station installed at Jornada LTER NPP M-WELL site. Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths. This is an ONGOING dataset.
DOI: 10.6073/pasta/557d7e28e74743a0058a770f2b7c38ce
title: Jornada Basin LTER: Wireless meteorological station at NPP G-IBPE site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP G-IBPE met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP G-IBPE site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.6073/pasta/a8ca8816c5fae43dda68a9517e995f4b
title: SBC LTER: Ocean: Currents and Biogeochemistry: Moored CTD and ADCP data from Carpinteria Reef Mooring (CAR, ongoing since 2001

description: ADCP (Currents), CTD (Hydrography) and Optics data (Fluorescence, Beam Attenuation and Volume Scattering Function) were collected at Carpinteria Reef in the Santa Barbara Channel (site ID: CAR). Data have been interpolated to a 20 minute interval. ADCP data are binned at a 0.5 meter interval, measured as height from the bottom to a maximum of 16 bins. All bins may not be filled, and in some cases, data from bins technically above the surface are included. VSF data are available at angles, 100, 125 and 150 degrees. CTD parameters include Pressure, Temperature, Conductivity, Salinity, Density and Fluorescence. The CTD array is located approximately 4.5 meters from the surface, and there are additional temperature thermistors near the CTD array, at the bottom, and mid way between these two.
DOI: 10.6084/m9.figshare.22138415.v3
title: Supplementary Files – Dissecting the genomic regions that underpin the genetic correlations between production, fertility, and urea traits

description: Supplementary File 1. The number of windows, chromosome number, chromosome coordinates, local correlation estimates, pvalues and status of each window for production vs fertility trait pairs (Table S1-S3). Supplementary File 2. The chromosome number and chromosome coordinates of windows consistently tagged as drivers across production vs fertility trait pairs (Table S4). Supplementary File 3. The QTL enriched for the driver regions for production vs fertility trait pairs (Table S5). Supplementary File 4. The chromosome number and chromosome coordinates of windows consistently tagged as antagonizers across production vs fertility trait pairs (Table S6) Supplementary File 5. The number of windows, chromosome number, chromosome coordinates, local correlation estimates, pvalues and status of each window for urea vs fertility trait pairs (Table S7-S8) Supplementary File 6. The chromosome number and chromosome coordinates of windows consistently tagged as drivers across urea vs fertility trait pairs (Table S9). Supplementary File 7. The QTL enriched for the driver regions for urea vs fertility trait pairs (Table S10). Supplementary File 8. The chromosome number and chromosome coordinates of windows consistently tagged as antagonizers across urea vs fertility trait pairs (Table S11) Supplementary File 9. The QTL enriched for the antagonizer regions for urea vs fertility trait pairs (Table S12). Supplementary File 10. The number of windows, chromosome number, chromosome coordinates, local correlation estimates, pvalues and status of each window for urea vs production trait pairs (Table S13-S18). Supplementary File 11. The chromosome number and chromosome coordinates of windows consistently tagged as drivers across urea vs production trait pairs (Table S19). Supplementary File 12. The QTL enriched for the driver regions for urea vs production trait pairs (Table S20). Supplementary File 13. The chromosome number and chromosome coordinates of windows consistently tagged as antagonizers across urea vs production trait pairs (Table S21).
DOI: 10.25934/pr00008969.0
title: Available datapackage for study 'Association between psoriasis and cardiometabolic comorbidities in a racially andethnically diverse low-income primary care population'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6073/pasta/b1e28ae1431e60288b0a6d30a085468f
title: SBC LTER: Ocean: Currents and Biogeochemistry: Moored CTD and ADCP data from Arroyo Quemado Reef Mooring (ARQ), ongoing since 2004

description: ADCP (Currents), CTD (Hydrography) and Optics data (Fluorescence, Beam Attenuation and Volume Scattering Function) were collected at Arroyo Quemado Reef in the Santa Barbara Channel (site ID: ARQ). Data have been interpolated to a 20 minute interval. ADCP data are binned at a 1.0 meter interval, measured as height from the bottom to a maximum of 16 bins. All bins may not be filled, and in some cases, data from bins technically above the surface are included. VSF data are available at angles, 100, 125 and 150 degrees. CTD parameters include Pressure, Temperature, Conductivity, Salinity, Density and Fluorescence. The CTD array is located approximately 4.5 meters from the surface, and there are additional temperature thermistors near the CTD array, at the bottom, and mid way between these two.
DOI: 10.18739/a27p8tf6x
title: ArcticDTM estimated from ArcticDEM at three study sites in Livengood, Alaska, 2011-2013

description: The dataset includes the ArcticDTMs estimated from a high-resolution digital elevation model (DEM) product, namely ArcticDEM, at three study sites in Livengood, Alaska. As it is generated from stereo-pairs of optical satellite imagery, ArcticDEM represents a mixture of digital surface model (DSM) over non-ground areas and digital terrain model (DTM) at bare grounds. Reconstructing DTM from ArcticDEM is essential in studies requiring bare ground elevation such as modeling hydrological processes, tracking surface change dynamics, and estimating vegetation canopy height and associated forest attributes. The proposed ArcticDTM generation method includes two steps: 1) identifying ground pixels from WorldView-2 imagery using Gaussian mixture model (GMM) with local refinement by morphological operation, and 2) generating continuous DTM surface using ArcticDEMs at ground locations and natural neighbor (NN) interpolation. In addition to the estimated ArcticDTM, the original ArcticDEM products including its source WorldView-2 multispectral imagery, and the reference lidar-derived digital terrain model (DTM) used for ArcticDTM evaluation are also attached. This dataset can be used as a benchmark dataset for examining the efficiency of optical stereoscopy-based DTM generation approaches. Paper citation: Zhang, T.; Liu, D. Reconstructing Digital Terrain Models from ArcticDEM and WorldView-2 Imagery in Livengood, Alaska. Remote Sens. 2023, 15, 2061. https://doi.org/10.3390/rs15082061
DOI: 10.5281/zenodo.8021469
title: lophonetta_specularioides_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8021468
title: lophonetta_specularioides_spades_01.fasta.gz

description: .
DOI: 10.6073/pasta/caa83ddcddc1f2ddd83016a27de2487f
title: SBC LTER: Ocean: Currents and Biogeochemistry: Moored CTD and ADCP data from Mohawk Outside Spar (MKO), ongoing since 2005

description: ADCP (Currents), CTD (Hydrography) and Optics data (Fluorescence, Beam Attenuation and Volume Scattering Function) were collected at Mohawk Reef in the Santa Barbara Channel (site ID: MKO). Data have been interpolated to a 20 minute interval. ADCP data are binned at a 0.5 meter interval, measured as height from the bottom to a maximum of 16 bins. All bins may not be filled, and in some cases, data from bins technically above the surface are included. VSF data are available at angles, 100, 125 and 150 degrees. CTD parameters include Pressure, Temperature, Conductivity, Salinity, Density and Fluorescence. The CTD array is located approximately 4.5 meters from the surface, and there are additional temperature thermistors near the CTD array, at the bottom, and mid way between these two.
DOI: 10.6084/m9.figshare.23458136
title: Blood-based Proteomic Signatures Associated With MEN1-related Duodenopancreatic Neuroendocrine Tumor Progression

description: Purpose: Patients with multiple endocrine neoplasia type 1 (MEN1) are predisposed to develop duodenopancreatic neuroendocrine tumors (dpNETs), and metastatic dpNET is the primary cause of disease-related mortality. Presently, there is a paucity of prognostic factors that can reliably identify patients with MEN1-related dpNETS who are at high risk of distant metastasis. In the current study, we aimed to establish novel circulating molecular protein signatures associated with disease progression. <br> Experimental Design: Mass spectrometry-based proteomic profiling was conducted on plasmas procured through an international collaboration between MD Anderson Cancer Center, the National Institutes of Health, and the University Medical Center Utrecht from a cohort of 56 patients with MEN1 [14 with distant metastasis dpNETs (cases) and 42 with either indolent dpNETs or no dpNETs (controls)]. Findings were compared to proteomic profiles generated from serially collected plasmas from a mouse model of Men1-pancreatic neuroendocrine tumors (Men1fl/flPdx1- CreTg) and control mice (Men1fl/fl). <br> Results: A total of 187 proteins were found to be elevated in MEN1 patients with distant metastasis compared to controls, including 9 proteins previously associated with pancreatic cancer and other neuronal proteins. Analyses of mouse plasmas revealed 196 proteins enriched for transcriptional targets of oncogenic MYCN, YAP1, POU5F1, and SMAD that were associated with disease progression in Men1fl/flPdx1-CreTg mice. Cross-species intersection revealed 19 proteins positively associated with disease progression in both human patients and in Men1fl/flPdx1-CreTg mice. <br> Conclusions: Our integrated analyses identified novel circulating protein markers associated with disease progression in MEN1-related dpNET.