cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13889137
title: Additional file 9 of Orthology and synteny analysis of receptor-like kinases “RLK” and receptor-like proteins “RLP” in legumes

description: Additional file 9: Table S6. Orthologous, paralogous and single-copy gene clusters of RLP among VV, AT, SL, VR, and VA.
DOI: 10.6084/m9.figshare.13889137.v1
title: Additional file 9 of Orthology and synteny analysis of receptor-like kinases “RLK” and receptor-like proteins “RLP” in legumes

description: Additional file 9: Table S6. Orthologous, paralogous and single-copy gene clusters of RLP among VV, AT, SL, VR, and VA.
DOI: 10.6084/m9.figshare.13632885
title: Additional file 2 of Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing

description: Additional file 1: Supplementary Table S1. Detailed profiles of the lakes sampled in the present study. Data were collected from Okazaki et al. [38] and Okazaki et al. [73]. † Sampling date and depths in 2010 are shown in parentheses.
DOI: 10.6084/m9.figshare.13632885.v1
title: Additional file 2 of Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing

description: Additional file 1: Supplementary Table S1. Detailed profiles of the lakes sampled in the present study. Data were collected from Okazaki et al. [38] and Okazaki et al. [73]. † Sampling date and depths in 2010 are shown in parentheses.
DOI: 10.6084/m9.figshare.13632894
title: Additional file 5 of Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing

description: Additional file 4: Supplementary Dataset. Summarized dataset related to amplicon sequence variants (ASVs) and operational taxonomic units (OTUs). The Excel file consists of two worksheets. In the first sheet (named “by_ASV”), each row represents an individual ASV. The columns indicate the corresponding SSU-ASV and OTU IDs, the taxonomy assigned to the OTU, and read abundance in each sample. The nucleotide sequences of the ASVs are shown in the last column. In the second sheet (named “by_OTU”), each row represents an individual OTU. The columns indicate the taxonomy, classification based on freshwater bacterioplankton nomenclature (see Methods for details), the number of SSU-ASVs and ASVs assigned to the OTU, the number of samples in which the OTU was detected, and read abundances in total and in each sample. OTUs are sorted based on the total read number. Representative 16S rRNA gene sequences of the OTUs are shown in the last column. In each sheet, the total number of the reads assigned to each sample is shown in the first row. Abbreviations for sample names follow those in Fig. 5.
DOI: 10.6084/m9.figshare.13632894.v1
title: Additional file 5 of Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing

description: Additional file 4: Supplementary Dataset. Summarized dataset related to amplicon sequence variants (ASVs) and operational taxonomic units (OTUs). The Excel file consists of two worksheets. In the first sheet (named “by_ASV”), each row represents an individual ASV. The columns indicate the corresponding SSU-ASV and OTU IDs, the taxonomy assigned to the OTU, and read abundance in each sample. The nucleotide sequences of the ASVs are shown in the last column. In the second sheet (named “by_OTU”), each row represents an individual OTU. The columns indicate the taxonomy, classification based on freshwater bacterioplankton nomenclature (see Methods for details), the number of SSU-ASVs and ASVs assigned to the OTU, the number of samples in which the OTU was detected, and read abundances in total and in each sample. OTUs are sorted based on the total read number. Representative 16S rRNA gene sequences of the OTUs are shown in the last column. In each sheet, the total number of the reads assigned to each sample is shown in the first row. Abbreviations for sample names follow those in Fig. 5.
DOI: 10.6084/m9.figshare.13889182
title: Additional file 1 of Actualized inventory of medicinal plants used in traditional medicine in Oaxaca, Mexico

description: Supplementary file 1.
DOI: 10.6084/m9.figshare.13889182.v1
title: Additional file 1 of Actualized inventory of medicinal plants used in traditional medicine in Oaxaca, Mexico

description: Supplementary file 1.
DOI: 10.6084/m9.figshare.13889206
title: Additional file 1 of A micro costing analysis of the development of a primary care intervention to improve the uptake of diabetic retinopathy screening

description: Additional file 1. Master cost items.
DOI: 10.6084/m9.figshare.13889206.v1
title: Additional file 1 of A micro costing analysis of the development of a primary care intervention to improve the uptake of diabetic retinopathy screening

description: Additional file 1. Master cost items.
DOI: 10.6084/m9.figshare.13889209
title: Additional file 2 of A micro costing analysis of the development of a primary care intervention to improve the uptake of diabetic retinopathy screening

description: Additional file 2. Salaries.
DOI: 10.6084/m9.figshare.13889209.v1
title: Additional file 2 of A micro costing analysis of the development of a primary care intervention to improve the uptake of diabetic retinopathy screening

description: Additional file 2. Salaries.
DOI: 10.6084/m9.figshare.13889239
title: Additional file 2 of Molecular analyses of triple-negative breast cancer in the young and elderly

description: Additional file 2. A Microsoft Excel file (.xlsx) including supplementary Table 1 showing PANTHER gene ontology results for supervised SAM analysis.
DOI: 10.6084/m9.figshare.13889239.v1
title: Additional file 2 of Molecular analyses of triple-negative breast cancer in the young and elderly

description: Additional file 2. A Microsoft Excel file (.xlsx) including supplementary Table 1 showing PANTHER gene ontology results for supervised SAM analysis.
DOI: 10.6084/m9.figshare.13889265
title: Additional file 3 of Repeatability and reproducibility assessment in a large-scale population-based microbiota study: case study on human milk microbiota

description: Additional file 2: Table S2. List of identified contaminant taxa.
DOI: 10.6084/m9.figshare.13889265.v1
title: Additional file 3 of Repeatability and reproducibility assessment in a large-scale population-based microbiota study: case study on human milk microbiota

description: Additional file 2: Table S2. List of identified contaminant taxa.
DOI: 10.6084/m9.figshare.13889268
title: Additional file 4 of Repeatability and reproducibility assessment in a large-scale population-based microbiota study: case study on human milk microbiota

description: Additional file 3. Data analysis codes.
DOI: 10.6084/m9.figshare.13889268.v1
title: Additional file 4 of Repeatability and reproducibility assessment in a large-scale population-based microbiota study: case study on human milk microbiota

description: Additional file 3. Data analysis codes.
DOI: 10.6084/m9.figshare.13889320
title: Additional file 1 of Can eosinophilia and neutrophil–lymphocyte ratio predict hospitalization in asthma exacerbation?

description: Additional file 1. Patients' data on demographic characteristics and laboratory findings.
DOI: 10.6084/m9.figshare.13889320.v1
title: Additional file 1 of Can eosinophilia and neutrophil–lymphocyte ratio predict hospitalization in asthma exacerbation?

description: Additional file 1. Patients' data on demographic characteristics and laboratory findings.
DOI: 10.6084/m9.figshare.13889400
title: Additional file 5 of Isotypes of autoantibodies against novel differential 4-hydroxy-2-nonenal-modified peptide adducts in serum is associated with rheumatoid arthritis in Taiwanese women

description: Additional file 5: Table S2. Sequences of unmodified and 4-hydroxy-2-nonenal (HNE)-modified peptides.
DOI: 10.6084/m9.figshare.13889400.v1
title: Additional file 5 of Isotypes of autoantibodies against novel differential 4-hydroxy-2-nonenal-modified peptide adducts in serum is associated with rheumatoid arthritis in Taiwanese women

description: Additional file 5: Table S2. Sequences of unmodified and 4-hydroxy-2-nonenal (HNE)-modified peptides.
DOI: 10.6084/m9.figshare.13889380.v1
title: Additional file 1 of Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits

description: Additional file 1 : Table S1. Summary of sequence data generated from rumen samples of 49 dairy cows.
DOI: 10.6084/m9.figshare.13889386
title: Additional file 2 of Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits

description: Additional file 2 : Table S2. Sub-terms of ARGs linked to the mechanism of antimicrobial efflux detected in the current study.
DOI: 10.6084/m9.figshare.13889386.v1
title: Additional file 2 of Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits

description: Additional file 2 : Table S2. Sub-terms of ARGs linked to the mechanism of antimicrobial efflux detected in the current study.
DOI: 10.6084/m9.figshare.13889392
title: Additional file 4 of Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits

description: Additional file 4 : Table S4. Distributions of ARGs annotated to bacterial taxa in the rumen of cows with different milk protein yield.
DOI: 10.6084/m9.figshare.13889380
title: Additional file 1 of Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits

description: Additional file 1 : Table S1. Summary of sequence data generated from rumen samples of 49 dairy cows.
DOI: 10.6084/m9.figshare.13889389
title: Additional file 3 of Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits

description: Additional file 3 : Table S3. Comparison analysis of resistance genes in the rumen of dairy cows with different feed intake.
DOI: 10.6084/m9.figshare.13889395
title: Additional file 5 of Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits

description: Additional file 5 : Table S5. Comparison analysis of resistance genes in the rumen of dairy cows with different milk protein yield.
DOI: 10.6084/m9.figshare.13889395.v1
title: Additional file 5 of Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits

description: Additional file 5 : Table S5. Comparison analysis of resistance genes in the rumen of dairy cows with different milk protein yield.
DOI: 10.6084/m9.figshare.13889392.v1
title: Additional file 4 of Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits

description: Additional file 4 : Table S4. Distributions of ARGs annotated to bacterial taxa in the rumen of cows with different milk protein yield.
DOI: 10.6084/m9.figshare.13889398.v1
title: Additional file 6 of Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits

description: Additional file 6 : Table S6. The predominant resistance genes of the four resistotypes.
DOI: 10.6084/m9.figshare.13889398
title: Additional file 6 of Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits

description: Additional file 6 : Table S6. The predominant resistance genes of the four resistotypes.
DOI: 10.6084/m9.figshare.13889413
title: Additional file 10 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 10: Table S12. List of 103 unclassified contigs identified as alternate haplotigs using BUSCO Diptera data set and the software Purge_dups.
DOI: 10.6084/m9.figshare.13889413.v1
title: Additional file 10 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 10: Table S12. List of 103 unclassified contigs identified as alternate haplotigs using BUSCO Diptera data set and the software Purge_dups.
DOI: 10.6084/m9.figshare.13889419
title: Additional file 2 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 2: Table S2. Coordinates of TE sequences that were not found in the existing draft assembly of An. stephensi.
DOI: 10.6084/m9.figshare.13889419.v1
title: Additional file 2 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 2: Table S2. Coordinates of TE sequences that were not found in the existing draft assembly of An. stephensi.
DOI: 10.6084/m9.figshare.13889422
title: Additional file 3 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 3: Table S3. Coordinates of exonic TE sequences that were not found in the existing draft assembly of An. stephensi.
DOI: 10.6084/m9.figshare.13889389.v1
title: Additional file 3 of Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits

description: Additional file 3 : Table S3. Comparison analysis of resistance genes in the rumen of dairy cows with different feed intake.
DOI: 10.6084/m9.figshare.13889422.v1
title: Additional file 3 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 3: Table S3. Coordinates of exonic TE sequences that were not found in the existing draft assembly of An. stephensi.
DOI: 10.6084/m9.figshare.13889425
title: Additional file 4 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 4: Table S4. Coordinates of polymorphic TE sequences that are present in the scaffolds assigned to chromosomes but absent in the alternate haplotype sequences.
DOI: 10.6084/m9.figshare.13889425.v1
title: Additional file 4 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 4: Table S4. Coordinates of polymorphic TE sequences that are present in the scaffolds assigned to chromosomes but absent in the alternate haplotype sequences.
DOI: 10.6084/m9.figshare.13889428
title: Additional file 5 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 5: Table S5 Coordinates of putative Y-linked genes supported by multiple uniquely mapping Iso-Seq reads.
DOI: 10.6084/m9.figshare.13889428.v1
title: Additional file 5 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 5: Table S5 Coordinates of putative Y-linked genes supported by multiple uniquely mapping Iso-Seq reads.
DOI: 10.6084/m9.figshare.13889431
title: Additional file 6 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 6: Table S6. Genes that are in the top 1% (&gt;64 fold) category of the up- or down-regulated genes after blood feeding.
DOI: 10.6084/m9.figshare.13889431.v1
title: Additional file 6 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 6: Table S6. Genes that are in the top 1% (&gt;64 fold) category of the up- or down-regulated genes after blood feeding.
DOI: 10.6084/m9.figshare.13889437.v1
title: Additional file 8 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 8: Table S8. Classification of putative immune-related proteins of An. stephensi.
DOI: 10.6084/m9.figshare.13889434
title: Additional file 7 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 7: Table S7. PBM up or down regulated genes that are either fragmented and missing repetitive sequences like TEs and tandem copies.
DOI: 10.6084/m9.figshare.13889434.v1
title: Additional file 7 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 7: Table S7. PBM up or down regulated genes that are either fragmented and missing repetitive sequences like TEs and tandem copies.
DOI: 10.6084/m9.figshare.13889440.v1
title: Additional file 9 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 9: Table S10. Details of physical map data used in this study.
DOI: 10.6084/m9.figshare.13889440
title: Additional file 9 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 9: Table S10. Details of physical map data used in this study.
DOI: 10.6084/m9.figshare.13889437
title: Additional file 8 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

description: Additional file 8: Table S8. Classification of putative immune-related proteins of An. stephensi.
DOI: 10.6084/m9.figshare.13889472
title: Additional file 2 of Metabolic fingerprints of fear memory consolidation during sleep

description: Additional file 2: Data S2. Details of statistical analysis for Fig. 2
DOI: 10.6084/m9.figshare.13889475
title: Additional file 3 of Metabolic fingerprints of fear memory consolidation during sleep

description: Additional file 3: Data S3. Details of statistical analysis for Fig. 4
DOI: 10.6084/m9.figshare.13889469
title: Additional file 1 of Metabolic fingerprints of fear memory consolidation during sleep

description: Additional file 1: Data S1. Details of statistical analysis for Fig. 1
DOI: 10.6084/m9.figshare.13889475.v1
title: Additional file 3 of Metabolic fingerprints of fear memory consolidation during sleep

description: Additional file 3: Data S3. Details of statistical analysis for Fig. 4
DOI: 10.6084/m9.figshare.13889472.v1
title: Additional file 2 of Metabolic fingerprints of fear memory consolidation during sleep

description: Additional file 2: Data S2. Details of statistical analysis for Fig. 2
DOI: 10.6084/m9.figshare.13889469.v1
title: Additional file 1 of Metabolic fingerprints of fear memory consolidation during sleep

description: Additional file 1: Data S1. Details of statistical analysis for Fig. 1
DOI: 10.6084/m9.figshare.13889587
title: Overview of mice origins from Enhanced problem-solving ability as an adaptation to urban environments in house mice

description: Locations at which descendents of wild mice were captured.
DOI: 10.6084/m9.figshare.13889505
title: Supplementary Tables from Evidence for reduced immune gene diversity and activity during the evolution of termites

description: This file contains all supplementary tables.
DOI: 10.6084/m9.figshare.13889587.v1
title: Overview of mice origins from Enhanced problem-solving ability as an adaptation to urban environments in house mice

description: Locations at which descendents of wild mice were captured.
DOI: 10.6084/m9.figshare.13889255
title: Berkeley_HW.tgz

description: compressed file of original Berkeley HW file. please inform if this file also corrupt.
DOI: 10.6084/m9.figshare.13889505.v1
title: Supplementary Tables from Evidence for reduced immune gene diversity and activity during the evolution of termites

description: This file contains all supplementary tables.
DOI: 10.6084/m9.figshare.13889255.v1
title: Berkeley_HW.tgz

description: compressed file of original Berkeley HW file. please inform if this file also corrupt.
DOI: 10.6084/m9.figshare.13846820
title: Inputs

description: These files are datasets supporting the article.
DOI: 10.6084/m9.figshare.13846820.v2
title: Inputs

description: These files are datasets supporting the article.
DOI: 10.6084/m9.figshare.13846682
title: outputs

description: Outputs of MCMC models. All files are .RData files.
DOI: 10.6084/m9.figshare.13846820.v1
title: Inputs

description: These files are datasets supporting the article.
DOI: 10.6084/m9.figshare.13846682.v3
title: outputs

description: Outputs of MCMC models. All files are .RData files.
DOI: 10.6084/m9.figshare.13846682.v2
title: outputs

description: Outputs of MCMC models. All files are .RData files.
DOI: 10.6084/m9.figshare.13891268
title: Final_ATAC_protocol.docx

description: ATAC protocol
DOI: 10.6084/m9.figshare.13888553
title: EEG data.rar

description: Here is ERP experimental raw data.
DOI: 10.6084/m9.figshare.13888367
title: Original data of Ips hauseri

description: Pheromone signal of <i>Ips hauseri</i><br>
DOI: 10.14457/cu.the.1998.131
title: การปรับปรุงหลังคาเพื่อลดปริมาณการถ่ายเทความร้อน
DOI: 10.6084/m9.figshare.13893658
title: Supplementary_file_2 from Positive selection and gene duplications in tumour suppressor genes reveal clues about how cetaceans resist cancer

description: CAFE model 1. One λ was estimated for cetaceans as a total group and the other for the outgroup
DOI: 10.6084/m9.figshare.13893661
title: Supplementary_file_4 from Positive selection and gene duplications in tumour suppressor genes reveal clues about how cetaceans resist cancer

description: Supplementary_file_py.txt
DOI: 10.6084/m9.figshare.13893661.v1
title: Supplementary_file_4 from Positive selection and gene duplications in tumour suppressor genes reveal clues about how cetaceans resist cancer

description: Supplementary_file_py.txt
DOI: 10.6084/m9.figshare.13893664
title: Supplementary_file_3 from Positive selection and gene duplications in tumour suppressor genes reveal clues about how cetaceans resist cancer

description: CAFE model 2. We estimated four λ values (i) the stem cetacea, (ii) the total group of Mysticeti, (iii) the total group of Odontoceti and (iv) the outgroup
DOI: 10.6084/m9.figshare.13893664.v1
title: Supplementary_file_3 from Positive selection and gene duplications in tumour suppressor genes reveal clues about how cetaceans resist cancer

description: CAFE model 2. We estimated four λ values (i) the stem cetacea, (ii) the total group of Mysticeti, (iii) the total group of Odontoceti and (iv) the outgroup
DOI: 10.6084/m9.figshare.13893667
title: Supplementary tables from Positive selection and gene duplications in tumour suppressor genes reveal clues about how cetaceans resist cancer

description: Contains all the supplementary tables mentioned in the manuscript
DOI: 10.14457/cu.the.1998.132
title: นวนิยายสงครามของเออร์เนสต์ เฮมมิงเวย์ และจอห์น ดอส ปาสสอส : อิทธิพลของสงครามโลกครั้งที่หนึ่ง ที่มีต่อนวนิยาย
DOI: 10.14457/cu.the.1998.133
title: ผลกระทบของการใช้นโยบายการคลังต่อดุลการค้า
DOI: 10.6084/m9.figshare.13893658.v1
title: Supplementary_file_2 from Positive selection and gene duplications in tumour suppressor genes reveal clues about how cetaceans resist cancer

description: CAFE model 1. One λ was estimated for cetaceans as a total group and the other for the outgroup
DOI: 10.6084/m9.figshare.13893667.v1
title: Supplementary tables from Positive selection and gene duplications in tumour suppressor genes reveal clues about how cetaceans resist cancer

description: Contains all the supplementary tables mentioned in the manuscript
DOI: 10.25346/s6/qsiog1/zdvizu
title: tremor_3d_noEQ_linear_new.m
DOI: 10.25346/s6/qsiog1/kgpsze
title: tremor_3d_noEQ_bi.m
DOI: 10.25346/s6/qsiog1/oxgmzf
title: snap_v_000000glo
DOI: 10.25346/s6/qsiog1/0xxjbj
title: stations.dat
DOI: 10.25346/s6/qsiog1/o9au6p
title: test_3D_loop_w_3Dwm_fft.m

description: Script to run 3D simulation