cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27283176
title: The complete mitogenome of <i>Alternaria tenuissima</i> (Kunze) Wiltshire 1933 (Pleosporaceae), a fungus causing apple leaf blotch disease

description: <i>Alternaria tenuissima</i> (Kunze) Wiltshire 1933 is a plant pathogenic fungus mainly causing leaf blotch disease. Here, we de novo assembled mitochondrial genome of <i>A. tenuissima</i> isolate AT-1224. The total mitogenome size is 57,475 bp with 29.00% G + C content. The genome contained 12 coding genes and 15 hypothetical proteins, 34 transfer RNA (tRNA) genes and 2 ribosomal RNA (rRNA). There are 227 SSR repeats, range from 2 to 4 base pairs, most five repeats were AT (144), AAT (54), AG (33), AC (13) and AAG (5). The results also found 13 tandem repeats (&gt;100 bp), the largest repeat were forward 2 times located from 13,405 to 20,024 bp and 25,549 to 32,168 bp. Phylogenetic analysis based on 17 species complete mitogenomes indicated that <i>A. tenuissima</i> mitogenome was closest to 2 species, <i>A. solani</i> and <i>A. alternata,</i> sister clade to 6 species, representing <i>Curvularia clavate</i>, <i>Exserohilum rostratum</i>, <i>Exserohilum turcicum</i>, <i>Bipolaris cookie</i>, <i>Bipolaris oryzae</i> and <i>Bipolaris sorokiniana</i>. Further analysis among common fungus in local apple orchards using mitochondrial protein-coding genes revealed <i>A. tenuissima</i> were closing to 2 Alternaria fungi and a fungus representing <i>Phoma</i> sp. These results provide a basic reference for identification and evolution studies of <i>A. tenuissima</i> on apple trees.
DOI: 10.6084/m9.figshare.27283176.v1
title: The complete mitogenome of <i>Alternaria tenuissima</i> (Kunze) Wiltshire 1933 (Pleosporaceae), a fungus causing apple leaf blotch disease

description: <i>Alternaria tenuissima</i> (Kunze) Wiltshire 1933 is a plant pathogenic fungus mainly causing leaf blotch disease. Here, we de novo assembled mitochondrial genome of <i>A. tenuissima</i> isolate AT-1224. The total mitogenome size is 57,475 bp with 29.00% G + C content. The genome contained 12 coding genes and 15 hypothetical proteins, 34 transfer RNA (tRNA) genes and 2 ribosomal RNA (rRNA). There are 227 SSR repeats, range from 2 to 4 base pairs, most five repeats were AT (144), AAT (54), AG (33), AC (13) and AAG (5). The results also found 13 tandem repeats (&gt;100 bp), the largest repeat were forward 2 times located from 13,405 to 20,024 bp and 25,549 to 32,168 bp. Phylogenetic analysis based on 17 species complete mitogenomes indicated that <i>A. tenuissima</i> mitogenome was closest to 2 species, <i>A. solani</i> and <i>A. alternata,</i> sister clade to 6 species, representing <i>Curvularia clavate</i>, <i>Exserohilum rostratum</i>, <i>Exserohilum turcicum</i>, <i>Bipolaris cookie</i>, <i>Bipolaris oryzae</i> and <i>Bipolaris sorokiniana</i>. Further analysis among common fungus in local apple orchards using mitochondrial protein-coding genes revealed <i>A. tenuissima</i> were closing to 2 Alternaria fungi and a fungus representing <i>Phoma</i> sp. These results provide a basic reference for identification and evolution studies of <i>A. tenuissima</i> on apple trees.
DOI: 10.5517/ccdc.csd.cc2gjpnc
title: CCDC 2280163: Experimental Crystal Structure Determination

description: Related Article: Justin T. Weatherford-Pratt, Jeremy M. Bloch, Jacob A. Smith, Megan N. Ericson, Daniel J. Siela, Mason R. Ortiz, Mary H. Shingler, Sarah Fong, Jonathan A. Laredo, Ishaan U. Patel, Matt McGraw, Diane A. Dickie, W. Dean Harman|2024|Sci. Adv.|10|eadl0885|doi:10.1126/sciadv.adl0885
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5883/bold:aba5270
title: Overview of Barcode Index Number - BOLD:ABA5270

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5272
title: Overview of Barcode Index Number - BOLD:ABA5272

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.27308549
title: Characterization and phylogenetic analysis of the complete mitochondrial genome of <i>Aipysurus eydouxii</i> Gray 1849 (Elapidae: Hydrophiinae)

description: Hydrophiine sea snakes represent ecologically significant and species-rich marine predatory reptiles, many of which inhabit marine environments throughout their entire lifecycles. However, due to morphological variability and limited molecular phylogenetic studies, the taxonomic relationships within this group remain unclear. In this study, we present the first complete mitochondrial genome of Aipysurus sea snakes, specifically <i>Aipysurus eydouxii</i> Gray 1849. The mitogenome comprises 17,228 base pairs and contains a total of 37 genes, plus a putative control region. This study provides valuable genetic data that will contribute to the future taxonomic classification and ecological protection of hydrophiine sea snakes.
DOI: 10.6084/m9.figshare.27308549.v1
title: Characterization and phylogenetic analysis of the complete mitochondrial genome of <i>Aipysurus eydouxii</i> Gray 1849 (Elapidae: Hydrophiinae)

description: Hydrophiine sea snakes represent ecologically significant and species-rich marine predatory reptiles, many of which inhabit marine environments throughout their entire lifecycles. However, due to morphological variability and limited molecular phylogenetic studies, the taxonomic relationships within this group remain unclear. In this study, we present the first complete mitochondrial genome of Aipysurus sea snakes, specifically <i>Aipysurus eydouxii</i> Gray 1849. The mitogenome comprises 17,228 base pairs and contains a total of 37 genes, plus a putative control region. This study provides valuable genetic data that will contribute to the future taxonomic classification and ecological protection of hydrophiine sea snakes.
DOI: 10.5517/ccdc.csd.cc2gjppd
title: CCDC 2280164: Experimental Crystal Structure Determination

description: Related Article: Justin T. Weatherford-Pratt, Jeremy M. Bloch, Jacob A. Smith, Megan N. Ericson, Daniel J. Siela, Mason R. Ortiz, Mary H. Shingler, Sarah Fong, Jonathan A. Laredo, Ishaan U. Patel, Matt McGraw, Diane A. Dickie, W. Dean Harman|2024|Sci. Adv.|10|eadl0885|doi:10.1126/sciadv.adl0885
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gn6y9
title: CCDC 2283551: Experimental Crystal Structure Determination

description: Related Article: Justin T. Weatherford-Pratt, Jeremy M. Bloch, Jacob A. Smith, Megan N. Ericson, Daniel J. Siela, Mason R. Ortiz, Mary H. Shingler, Sarah Fong, Jonathan A. Laredo, Ishaan U. Patel, Matt McGraw, Diane A. Dickie, W. Dean Harman|2024|Sci. Adv.|10|eadl0885|doi:10.1126/sciadv.adl0885
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5883/bold:aba5284
title: Overview of Barcode Index Number - BOLD:ABA5284

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5517/ccdc.csd.cc2hp64k
title: CCDC 2314278: Experimental Crystal Structure Determination

description: Related Article: Justin T. Weatherford-Pratt, Jeremy M. Bloch, Jacob A. Smith, Megan N. Ericson, Daniel J. Siela, Mason R. Ortiz, Mary H. Shingler, Sarah Fong, Jonathan A. Laredo, Ishaan U. Patel, Matt McGraw, Diane A. Dickie, W. Dean Harman|2024|Sci. Adv.|10|eadl0885|doi:10.1126/sciadv.adl0885
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5883/bold:aba5287
title: Overview of Barcode Index Number - BOLD:ABA5287

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.27241398
title: The complete chloroplast genome sequence of <i>Primula medogensis</i> (Primulaceae) and its phylogeny

description: <i>Primula medogensis</i> W.B Ju, B. Xu & X.F. Gao 2023, a new species categorized under <i>P</i>. sect. <i>Cordifoliae</i>, was officially described in 2023. Given its recent classification, the genetic resources for this species are currently very limited. Here, we sequenced and assembled the first complete chloroplast genome of <i>P. medogensis</i> using Illumina sequencing technology. The complete chloroplast genome of <i>P. medogensis</i> is 151,486 bp in length, exhibiting a typical quadripartite structure. It consists of a large single-copy region (LSC; 83,407 bp) and a small single-copy region (SSC;17675 bp), separated by a pair of inverted repeat regions (IRs; 25202 bp). A total of 131 genes were annotated, including 86 protein-coding, 37 tRNA, and eight rRNA genes. The overall GC content was 37.1%. Phylogenetic analysis of 59 <i>Primula</i> species revealed a close relationship between <i>P. medogensis</i> and <i>P. calliantha</i> subsp. <i>bryophila.</i>
DOI: 10.6084/m9.figshare.27241398.v1
title: The complete chloroplast genome sequence of <i>Primula medogensis</i> (Primulaceae) and its phylogeny

description: <i>Primula medogensis</i> W.B Ju, B. Xu & X.F. Gao 2023, a new species categorized under <i>P</i>. sect. <i>Cordifoliae</i>, was officially described in 2023. Given its recent classification, the genetic resources for this species are currently very limited. Here, we sequenced and assembled the first complete chloroplast genome of <i>P. medogensis</i> using Illumina sequencing technology. The complete chloroplast genome of <i>P. medogensis</i> is 151,486 bp in length, exhibiting a typical quadripartite structure. It consists of a large single-copy region (LSC; 83,407 bp) and a small single-copy region (SSC;17675 bp), separated by a pair of inverted repeat regions (IRs; 25202 bp). A total of 131 genes were annotated, including 86 protein-coding, 37 tRNA, and eight rRNA genes. The overall GC content was 37.1%. Phylogenetic analysis of 59 <i>Primula</i> species revealed a close relationship between <i>P. medogensis</i> and <i>P. calliantha</i> subsp. <i>bryophila.</i>
DOI: 10.5883/bold:aba5288
title: Overview of Barcode Index Number - BOLD:ABA5288

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.27159065
title: Complete mitochondrial genome of <i>Saldoida armata</i> Horváth, 1911 (Heteroptera: Saldidae) and phylogenetic analysis

description: The complete mitochondrial genome of <i>Saldoida armata</i> (Heteroptera: Saldidae) is 16,049 bp in length, comprising 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rRNAs) and a control region. All the PCGs are initially encoded by ATN, TTG or GTG, and terminated coding with TAA or a single T. With the exception of <i>trnS(AGN)</i>, all tRNAs exhibit a typical cloverleaf secondary structure. Phylogenetic analysis reveals the sister relationship of <i>S. armata</i> with other Saldidae members. The complete mitogenome of <i>S. armata</i> will provide useful genetic information for species identification, phylogenetic analysis and conservation of this species.
DOI: 10.6084/m9.figshare.27159065.v1
title: Complete mitochondrial genome of <i>Saldoida armata</i> Horváth, 1911 (Heteroptera: Saldidae) and phylogenetic analysis

description: The complete mitochondrial genome of <i>Saldoida armata</i> (Heteroptera: Saldidae) is 16,049 bp in length, comprising 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rRNAs) and a control region. All the PCGs are initially encoded by ATN, TTG or GTG, and terminated coding with TAA or a single T. With the exception of <i>trnS(AGN)</i>, all tRNAs exhibit a typical cloverleaf secondary structure. Phylogenetic analysis reveals the sister relationship of <i>S. armata</i> with other Saldidae members. The complete mitogenome of <i>S. armata</i> will provide useful genetic information for species identification, phylogenetic analysis and conservation of this species.
DOI: 10.5883/bold:aba5291
title: Overview of Barcode Index Number - BOLD:ABA5291

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.27141542
title: The complete chloroplast genome sequence of <i>Begonia pedatifida</i>

description: <i>Begonia pedatifida</i> has persistently been utilized as a traditional folk herbal medicine. This study has sequenced the chloroplast genome of <i>B. pedatifida</i> to establish its genomic characteristics and to discern its phylogenetic relationships with other closely related species. The chloroplast genome structure of <i>B. pedatifida</i> reveals a circular molecule with a length of 169,606 bp, including a large single copy (LSC) region of 76,086 bp, a small single copy (SSC) region of 18,314 bp, and a pair of inverted repeats (IRS) region of 37,603 bp. The entire genome contains 138 genes, which consist of 88 protein-coding genes, 42 tRNA genes, and 8 rRNA genes. Phylogenetic analysis suggests that <i>B. pedatifida</i> is closely related to <i>Begonia emeiensis</i>, <i>Begonia jinyunensis</i>, and <i>Begonia pulchrifolia</i>, sharing a common ancestor and forming sister lineages. This research provides genetic information for further study on <i>B. pedatifida</i>.
DOI: 10.6084/m9.figshare.27141542.v1
title: The complete chloroplast genome sequence of <i>Begonia pedatifida</i>

description: <i>Begonia pedatifida</i> has persistently been utilized as a traditional folk herbal medicine. This study has sequenced the chloroplast genome of <i>B. pedatifida</i> to establish its genomic characteristics and to discern its phylogenetic relationships with other closely related species. The chloroplast genome structure of <i>B. pedatifida</i> reveals a circular molecule with a length of 169,606 bp, including a large single copy (LSC) region of 76,086 bp, a small single copy (SSC) region of 18,314 bp, and a pair of inverted repeats (IRS) region of 37,603 bp. The entire genome contains 138 genes, which consist of 88 protein-coding genes, 42 tRNA genes, and 8 rRNA genes. Phylogenetic analysis suggests that <i>B. pedatifida</i> is closely related to <i>Begonia emeiensis</i>, <i>Begonia jinyunensis</i>, and <i>Begonia pulchrifolia</i>, sharing a common ancestor and forming sister lineages. This research provides genetic information for further study on <i>B. pedatifida</i>.
DOI: 10.6084/m9.figshare.27283180
title: The complete mitochondrial genome of <i>Triplophysa erythraea</i> (Huang et al. 2019) (Cypriniformes, Nemacheilidae)

description: In this study, the complete mitochondrial genome of <i>Triplophysa erythraea</i> was determined for the first time. Results showed the mitogenome was 16 565 bp, including 2 ribosomal RNA genes, 22 transfer RNA genes, 13 protein-coding genes and 2 non-coding regions. The overall base composition of its mitochondrial genome was 28.9% A, 25.2% T, 28.7% C and 17.2% G. Phylogenetic tree revealed that <i>Triplophysa erythraea</i> had the closest relationship with <i>Triplophysa xiangxiensis</i>, which was also found in Xiangxi Tujia and Miao Nationality Autonomous Prefecture, Hunan province. In general, this study provided valuable information for conservation genetics analyses of <i>Triplophysa erythraea</i> and further displayed the evolution of species within the genus <i>Triplophysa</i>.
DOI: 10.6084/m9.figshare.27283180.v1
title: The complete mitochondrial genome of <i>Triplophysa erythraea</i> (Huang et al. 2019) (Cypriniformes, Nemacheilidae)

description: In this study, the complete mitochondrial genome of <i>Triplophysa erythraea</i> was determined for the first time. Results showed the mitogenome was 16 565 bp, including 2 ribosomal RNA genes, 22 transfer RNA genes, 13 protein-coding genes and 2 non-coding regions. The overall base composition of its mitochondrial genome was 28.9% A, 25.2% T, 28.7% C and 17.2% G. Phylogenetic tree revealed that <i>Triplophysa erythraea</i> had the closest relationship with <i>Triplophysa xiangxiensis</i>, which was also found in Xiangxi Tujia and Miao Nationality Autonomous Prefecture, Hunan province. In general, this study provided valuable information for conservation genetics analyses of <i>Triplophysa erythraea</i> and further displayed the evolution of species within the genus <i>Triplophysa</i>.
DOI: 10.5883/bold:aba5292
title: Overview of Barcode Index Number - BOLD:ABA5292

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5293
title: Overview of Barcode Index Number - BOLD:ABA5293

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.27178215
title: The complete chloroplast genome and phylogenetic analysis of <i>Garcinia esculenta</i> Y. H. Li. 1981 (Clusiaceae)

description: <i>Garcinia esculenta</i> Y. H. Li. 1981 (Clusiaceae) is an endemic tree species in China, primarily found in western and northwestern Yunnan Province. In this research, the complete chloroplast genome of <i>G. esculenta</i> was sequenced using the Illumina NovaSeq6000 platform. The result showed that the length of the complete chloroplast genome was 155,853 bp, which was composed of a large single-copy region (LSC) of 84,534 bp, a small single-copy region (SSC) of 17,175 bp, and a pair of inverted repeat (IR) regions of 27,072 bp. The overall GC content was 36.1%. The complete chloroplast genome encompassed 128 genes, comprising 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis of the complete chloroplast genome sequences of 22 species revealed that <i>G. esculenta</i> is most closely related to <i>G. oblongifolia</i>.
DOI: 10.6084/m9.figshare.27178215.v1
title: The complete chloroplast genome and phylogenetic analysis of <i>Garcinia esculenta</i> Y. H. Li. 1981 (Clusiaceae)

description: <i>Garcinia esculenta</i> Y. H. Li. 1981 (Clusiaceae) is an endemic tree species in China, primarily found in western and northwestern Yunnan Province. In this research, the complete chloroplast genome of <i>G. esculenta</i> was sequenced using the Illumina NovaSeq6000 platform. The result showed that the length of the complete chloroplast genome was 155,853 bp, which was composed of a large single-copy region (LSC) of 84,534 bp, a small single-copy region (SSC) of 17,175 bp, and a pair of inverted repeat (IR) regions of 27,072 bp. The overall GC content was 36.1%. The complete chloroplast genome encompassed 128 genes, comprising 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis of the complete chloroplast genome sequences of 22 species revealed that <i>G. esculenta</i> is most closely related to <i>G. oblongifolia</i>.
DOI: 10.5883/bold:aba5295
title: Overview of Barcode Index Number - BOLD:ABA5295

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5306
title: Overview of Barcode Index Number - BOLD:ABA5306

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5308
title: Overview of Barcode Index Number - BOLD:ABA5308

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5309
title: Overview of Barcode Index Number - BOLD:ABA5309

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5310
title: Overview of Barcode Index Number - BOLD:ABA5310

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5311
title: Overview of Barcode Index Number - BOLD:ABA5311

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5312
title: Overview of Barcode Index Number - BOLD:ABA5312

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5313
title: Overview of Barcode Index Number - BOLD:ABA5313

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5340
title: Overview of Barcode Index Number - BOLD:ABA5340

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5350
title: Overview of Barcode Index Number - BOLD:ABA5350

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5351
title: Overview of Barcode Index Number - BOLD:ABA5351

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5352
title: Overview of Barcode Index Number - BOLD:ABA5352

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5353
title: Overview of Barcode Index Number - BOLD:ABA5353

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5360
title: Overview of Barcode Index Number - BOLD:ABA5360

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aba5361
title: Overview of Barcode Index Number - BOLD:ABA5361

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.