cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/w7n83knr5z.1
title: Questionaire for: Community perceptions link environmental decline to reduced support for tourism development in Small Island States.

description: Questionnaire used in surveys with households and resource users.
DOI: 10.17632/zzb25fzzvg.1
title: Data for: Always on the tipping point – a search for signals of past societies and related peatland ecosystem critical transitions during the last 6500 years in N Poland
DOI: 10.5061/dryad.5266bm8/1
title: SORTIE Code for Ash Dieback Paper

description: A zipped archive containing all the necessary code and input files to run the SORTIE program used in the paper
DOI: 10.5061/dryad.63g03p8/1
title: The high-resolution maps of habitat suitability for all species under current and future (2050s and 2070s) climatic scenarios

description: Spatial patterns of species-specific establishment threat under current, 2050s and 2070s climate scenarios for the 115 species considered in this study. The upright panel indicates the changes in species establishment threat expressed as the total suitable area (10^6 km2). The middle panel represents the probability (%) of presence predicted by species distribution models (SDMs) at different time horizons. The lower panel represents the uncertainty in establishment threat expressed as the coefficient of variation of the occurrence probabilities among all projections. The color of species name corresponds to four groups clustered based on introduction pathways and species status. Darkorange: Current aquaculture species, Turquoise: Current ornamental species, Burlywood: Potential aquaculture species, Darkslategray: Potential ornamental species.
DOI: 10.5061/dryad.6kg1sd7/1
title: datas
DOI: 10.5061/dryad.cs59t13/10
title: EPA-ng gene trees (medium ILS)

description: Estimated gene trees for simulated dataset with medium ILS. For each set of gene trees (200 genes), one species has been pruned and then placed back using EPA-ng. The number in folder name, e.g. sp100 is the label of species being pruned and then placed back.
DOI: 10.5061/dryad.cs59t13/12
title: Supplementary-material
DOI: 10.5061/dryad.cs59t13/4
title: Estimated gene trees

description: Estimated gene trees for the three model conditions with speciation rate of 0.000001. There are three folders corresponding to the three ILS level and in each folder there are 50 replicates each containing 1000 gene trees in newick format. The name 'model.200.500000.0.0000001' means the number of species is 200, number of generations is 500000 and speciation rate is 0.0000001.
DOI: 10.5061/dryad.cs59t13/5
title: gene trees for 10K dataset

description: Estimated gene trees for the very large dataset, used for running time analysis
DOI: 10.5061/dryad.cs59t13/6
title: gene trees for 10K dataset

description: Estimated gene trees (part 2 ) for the very large dataset, used for running time analysis
DOI: 10.5061/dryad.cs59t13/7
title: Biological datasets

description: The estimated gene trees and species trees for the three biological datasets are included. The intermediate and final trees for ordered placement are also included in 'hierarchical-placement'.
DOI: 10.5061/dryad.cs59t13/8
title: Backbone trees for ordered placement

description: Backbone trees used for ordered placement for simulated dataset with 201 species trees, which are estimated species trees created from 50, 200 and 1000 gene trees. 50, 100 and 150 leaves are pruned which are specified by 'x.pruned' in the names.
DOI: 10.5061/dryad.cs59t13/9
title: EPA-ng gene trees (low ILS)

description: Estimated gene trees for simulated dataset with low ILS. For each set of gene trees (200 genes), one species has been pruned and then placed back using EPA-ng. The number in folder name, e.g. sp100 is the label of species being pruned and then placed back.
DOI: 10.5061/dryad.f8320d5/1
title: Analysis of DGRP Data R Markdown

description: R Markdown script of the analysis of the DGRP data, as described in Frankino et al 2019
DOI: 10.5061/dryad.f8320d5/2
title: DRGP Wing-Pupal Measurements

description: DGRP data of the wing and pupal size of males and females from 87 isogenic lineages, each reared across a nutritional gradient
DOI: 10.5061/dryad.f8320d5/3
title: Analysis of DGRP Data PDF

description: PDF generated by the R Markdown script analyzing the DGRP data
DOI: 10.5061/dryad.j5m8h10/1
title: NZB HLMs 481
DOI: 10.5061/dryad.j5m8h10/2
title: NZB HLMs 495
DOI: 10.5061/dryad.j5m8h10/3
title: NZB HLMs 509a
DOI: 10.5061/dryad.j5m8h10/4
title: NZB HLMs 509b
DOI: 10.5061/dryad.j5m8h10/5
title: NZB HLMs 509c
DOI: 10.5061/dryad.j5m8h10/6
title: NZB HLMs 511a
DOI: 10.5061/dryad.j5m8h10/7
title: NZB HLMs 511b
DOI: 10.5061/dryad.j5m8h10/8
title: NZB HLMs KCN 506
DOI: 10.5061/dryad.pk05kf2/1
title: Appendix_1_Table_A1

description: Appendix 1: separate Excel-file with Genbank accession numbers and Table A1.
DOI: 10.5061/dryad.t03b7b8/1
title: Corigan training dataset

description: 95 images from on-field sentinel experiments. These image files are associated with labelled files. These files have been used to train the Yolov3 detection model (Redmon & Farhadi 2018), which constitutes the core of the CORIGAN pipeline. For more details on data and CORIGAN, see the related manuscript and supplementary materials in Methods in Ecology & Evolution.
DOI: 10.5061/dryad.t03b7b8/2
title: Corigan testing dataset

description: 93 images from on-field sentinel experiments. These image files are associated with labelled files. These files have been used to test the Yolov3 detection model (Redmon & Farhadi 2018), which constitutes the core of the CORIGAN pipeline. For more details on data and CORIGAN, see the related manuscript and supplementary materials in Methods in Ecology & Evolution.
DOI: 10.17632/46k8b2tn5n.1
title: Data for: Climate Change and Migration: Is Agriculture the Main Channel?

description: Data and replication files (STATA 13 format) for the paper: Climate Change and Migration: Is Agriculture the Main Channel? (Chiara Falco, Marzio Galeotti and Alessandro Olper)
DOI: 10.17632/9vpywtj2wm.1
title: Data for: The Incidence of Non-Arteritic Ischemic Optic Neuropathy Following Topical Clear Corneal Cataract Surgery: Survey and Meta-analysis
DOI: 10.17632/bvdbyyfjch.1
title: Data for: Ensemble of Metaheuristics for Energy-Efficient Hybrid Flowshops: Makespan versus Total Energy Consumption

description: Energy-Efficient Hybrid Flowshop Scheduling
DOI: 10.17632/n25dwn3zjj.1
title: Data for: Enhanced uropathogenic Escherichia coli-induced infection in uroepithelial cells by sugar through TLR-4 and JAK/STAT1 signaling pathways

description: the raw data of each quantification assay, including fluorescence microscopy, CFU assay, RT-PCR and western blotting
DOI: 10.17632/w6pph28z8s.1
title: Data for: Organic geochemical, palynofacies, and petrographic analyses to study the hydrocarbon potential of the Kharita Formation (Albian) in the Matruh Basin, northwestern Egypt
DOI: 10.17632/wt3yds7rrt.1
title: Data for: Vegetation Associations and Relative Abundance of Rodents on St. Eustatius, Caribbean Netherlands

description: Relative abundance of rats and mice Vegetation data
DOI: 10.5061/dryad.360v97q/1
title: m2.main.csv

description: Estimates of m2 and h2 used in the analyses described in the main text
DOI: 10.5061/dryad.360v97q/2
title: m2.form.csv

description: Estimates of m2 and h2 used in the formal meta-analyses described in the Supporting Information
DOI: 10.5061/dryad.360v97q/3
title: m2.all.est.csv

description: Estimates of m2 including cases where the study reported finding that maternal effects were non-significant. Analyses reported in Supporting Information.
DOI: 10.5061/dryad.360v97q/4
title: m2.sex.csv

description: Subset of the larger dataset, here including just those estimates of m2 and h2 for traits measured in males and females. This subset of the data is included with code (“example code for offspring sex analyses.txt”) demonstrating how each kind of analysis was conducted.
DOI: 10.5061/dryad.360v97q/5
title: example code for offspring sex analyses

description: Annotated R code with examples of each kind of analysis. Uses differences between males and females.
DOI: 10.5061/dryad.533j6c3/1
title: Cole_SupplementaryMaterials

description: Supplementary tables and descriptions of associated data files.
DOI: 10.5061/dryad.533j6c3/2
title: SuppData1_Cole_DiploGenusData

description: The primary data file for all analyses conducted, containing stratigraphic ranges, lithology, species richness, and mean trait data for each diplobathrid genus.
DOI: 10.5061/dryad.660js04/1
title: Spleen_B-1a_TLRKO_2

description: Tlr2-/-Tlr4-/-Unc93b13d/3d C57BL/6 (Mus musculus) Female (#2) 7wk old Spleen B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/2
title: PerC_B-1a_TLRKO_3

description: Tlr2-/-Tlr4-/-Unc93b13d/3d C57BL/6 (Mus musculus) Female (#3) 7wk old Peritoneal Cavity B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/3
title: PerC_B-1a_TLRKO_1

description: Tlr2-/-Tlr4-/-Unc93b13d/3d C57BL/6 (Mus musculus) Female (#1) 7wk old Peritoneal cavity B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/4
title: Spleen_B-1a_TLRKO_3

description: Tlr2-/-Tlr4-/-Unc93b13d/3d C57BL/6 (Mus musculus) Female (#3) 7wk old Spleen B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/5
title: Spleen_B-1a_TLRKO_1

description: Tlr2-/-Tlr4-/-Unc93b13d/3d C57BL/6 (Mus musculus) Female (#1) 7wk old Spleen B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/6
title: PerC_B-1a_TLRKO_2

description: Tlr2-/-Tlr4-/-Unc93b13d/3d C57BL/6 (Mus musculus) Female (#2) 7wk old Peritoneal cavity B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/7
title: PerC_B-1a_TLR2x4dKO_2

description: Tlr2-/-Tlr4-/- C57BL/6 (Mus musculus) Female (#2) 7wk old Peritoneal cavity B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.cs59t13/11
title: EPA-ng gene trees (high ILS)

description: Estimated gene trees for simulated dataset with high ILS. For each set of gene trees (200 genes), one species has been pruned and then placed back using EPA-ng. The number in folder name, e.g. sp100 is the label of species being pruned and then placed back.
DOI: 10.5061/dryad.f8320d5/4
title: Analysis of Frankino 2005 Data R Markdown

description: R Markdown script of the analysis of the Frankino 2005 data, as described in Frankino et al 2019.
DOI: 10.5061/dryad.f8320d5/5
title: Frankino_2005_Data

description: Data from Frankino 2005
DOI: 10.5061/dryad.f8320d5/6
title: Analysis of Frankino 2005 Data PDF

description: PDF generated by the R Markdown script analyzing the Frankino 2005 data
DOI: 10.5061/dryad.f8320d5/7
title: Analysis of Wilkinson 1993 Data R Markdown

description: R Markdown script of the analysis of the Wilkinson 1993 data, as described in Frankino et al 2019.
DOI: 10.5061/dryad.f8320d5/8
title: Wilkinson 1993 Data

description: Wilkinson 1993 data
DOI: 10.5061/dryad.f8320d5/9
title: Analysis of Wilkinson 1993 Data PDF

description: PDF generated by the R Markdown script analyzing the Wilkinson 1993 data
DOI: 10.5061/dryad.j5m8h10/9
title: NZB HLMs KCN 520
DOI: 10.5061/dryad.jc3mk77/1
title: Stethoscope disinfection in Ethiopia

description: SPSS data on stethoscope disinfection
DOI: 10.5061/dryad.kr06n63/1
title: IPA Enrichment data

description: IPA Core Analysis performed on differentially expressed genes (Fold change &gt; +/- 1.5; q-value &lt; 0.05).
DOI: 10.5061/dryad.kr06n63/2
title: fpkm isoform matrix
DOI: 10.5061/dryad.kr06n63/3
title: NM28d vs PBS sig isoforms

description: Differentially expressed genes (Fold change &gt; +/- 1.5; q-value &lt; 0.05) in alveolar macrophages 28d post Nitrogen mustard exposure
DOI: 10.5061/dryad.kr06n63/4
title: NM1d vs PBS sig isoforms

description: Differentially expressed genes (Fold change &gt; +/- 1.5; q-value &lt; 0.05) in alveolar macrophages 1d post Nitrogen mustard exposure
DOI: 10.5061/dryad.qq4715f/1
title: Seed predation of Tribulus cistoides seeds by Darwin's finches on natural populations

description: Mericarps were sampled from 30 T. cistoides populations across seven islands of the archipelago over three years (2015-2017). For each mericarp, we measured length (mm), width (mm), and the distance between the tips of the upper spines (upper spine size, mm) located towards the distal end of the mericarp, noted the presence or absence of lower spines, and the number of seeds removed by finches. Geographic coordinates of each population is provided in Appendix S1: Table S1.
DOI: 10.5061/dryad.t5nv542/1
title: ZOTU sequences

description: ZOTU sequences obtained from DNA extracted from faeces of Rhinolophus hipposideros in a vineyard system.
DOI: 10.17632/bzgkmbv4p3.1
title: Data for: In vitro testing of flash-frozen sublingual membranes for storage and reproducible permeability studies of macromolecular drugs from solution or nanofiber mats.

description: sublingual in vitro apparent permeabilities of caffeine, and fluorescein-labeled dextrans and albumin
DOI: 10.17632/c422nrhhdf.1
title: Data for: Hybrid III-V/SiGe solar cells grown on Si substrates through reverse buffer

description: Raw data files of the main measurements shown in the main manuscript.
DOI: 10.17632/grcb72kccf.1
title: Data for: The ship recycling market in Brazil - The Amazon potential

description: ANTAQ database is the list of all registered ships in Brazil, with their characteristic information (Dimension, Power and Type) List of all ships dismantled all over the world (2012-2016) has its source from NGO Shipbreaking. The file has a filtered data and information of Brazilian ships.
DOI: 10.17632/m259fhp4j7.1
title: ORMOSIL-entrapped copper complex as electrocatalyst for the heterogeneous de-chlorination of alkyl halides

description: The development of an efficient method for the de-halogenation of alkyl halides is an essential step towards the elimination of these pollutants from the environment. Here we show that entrapment of an electro-catalyst in sol-gel electrodes yields efficient electrodes for this process. In this study Cu(1,4,8,11-tetra-aza-cyclo-tetra-decane)2+ was used as the active catalyst in the de-chlorination of CCl3CO2-. The major electro-catalytic product is oxalate while a minor product, depending on experimental conditions, is either glyoxalate or acetate. The efficiency of the electro-catalytic process depends on the nature of the precursors used to prepare the sol-gel matrix. The observed electro-catalytic current decreases when cyclic voltammetry is performed at high scan rates. This surprising result indicates that the mechanism of the electro-catalytic process is dependent on the scan rate. Plausible mechanisms at low and high scan rates are proposed.
DOI: 10.17632/py7mmphzhn.1
title: Data for: The Impact of Exurban Development on Land Use/Land Cover Change in Kurgan City, Russia

description: Landsat 5TM scenes of Kurgan City and surrounding area that were used to estimate land cover change and forest shrinkage. Source: https://www.usgs.gov/
DOI: 10.17632/rs2hct2rdd.1
title: Data for: Ultrasonic-Assisted Micro Solid Phase Extraction of Arsenic on a New Ion-Imprinted Polymer Synthesized from Chitosan-Stabilized Pickering Emulsion in Water, Rice and Vegetable Samples

description: The presented data are obtained using Excel and Design Expert software. The data from Excel software, and especially the output of the Design Expert software, in addition to contain the information presented in the article, can provide much more information to the researchers.
DOI: 10.5061/dryad.4152128/1
title: Kestrel
DOI: 10.5061/dryad.440rk01/1
title: Chipman_Hu_2019_Biology_Letters_raw_data

description: This file contains raw geochemical data from Screaming Lynx Lake, Yukon Flats, Alaska.
DOI: 10.5061/dryad.533j6c3/3
title: SuppData2_Cole_TStrees

description: A nexus file containing the 1500 time-scaled trees used for all phylogeny-based analyses.
DOI: 10.5061/dryad.533j6c3/4
title: SuppData3_Cole_MPTs

description: A nexus file containing the 15 unscaled trees used for the initial phylogenetic input.
DOI: 10.5061/dryad.533j6c3/5
title: SuppData4_Cole_PCA

description: Results of PCA analysis.
DOI: 10.5061/dryad.533j6c3/6
title: SuppData5_Cole_RawSpData

description: An Excel file containing three worksheets, including: (a) Raw diplobathrid specimen data, including occurrence information (age, locality, formation), lithologic data, and measurement data. Number of terminal feeding appendages is estimated from pinnules per 5 mm given arm length and branching morphology. Pinnule density is calculated given the number of brachials per 5 mm of arm length. (b) Summary of data collected for each diplobathrid genus, including number of specimens measured, species measured, and the source of the measurement (literature, collections, etc.). (c) Abbreviations for museum collections used in Supplementary Data 5a.
DOI: 10.5061/dryad.660js04/10
title: PerC_B-1a_TLR2x4dKO_1

description: Tlr2-/-Tlr4-/- C57BL/6 (Mus musculus) Female (#1) 7wk old Peritoneal cavity B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/11
title: PerC_B-1a_TLR2x4dKO_3

description: Tlr2-/-Tlr4-/- C57BL/6 (Mus musculus) Female (#3) 7wk old Peritoneal cavity B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/12
title: Spleen_B-1a_TLR2x4dKO_2

description: Tlr2-/-Tlr4-/- C57BL/6 (Mus musculus) Female (#2) 7wk old Spleen B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/13
title: PerC_B-1a_Unc3d_2

description: Unc93b(3d/3d) C57BL/6 (Mus musculus) Female (#2) 7wk old Peritoneal cavity B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/14
title: Spleen_B-1a_Unc3d_2

description: Unc93b(3d/3d) C57BL/6 (Mus musculus) Female (#2) 7wk old Spleen B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/15
title: Spleen_B-1a_Unc3d_3

description: Unc93b(3d/3d) C57BL/6 (Mus musculus) Female (#3) 7wk old Spleen B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/16
title: PerC_B-1a_Unc3d_3

description: Unc93b(3d/3d) C57BL/6 (Mus musculus) Female (#3) 7wk old Peritoneal cavity B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/8
title: Spleen_B-1a_TLR2x4dKO_1

description: Tlr2-/-Tlr4-/- C57BL/6 (Mus musculus) Female (#1) 7wk old Spleen B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.660js04/9
title: Spleen_B-1a_TLR2x4dKO_3

description: Tlr2-/-Tlr4-/- C57BL/6 (Mus musculus) Female (#3) 7wk old Spleen B-1a cells: IgH repertoire analysis by iRepertoire Inc.
DOI: 10.5061/dryad.870t013/1
title: Ungulate-train collision database

description: A database with over 3500 ungulate-train collisions and over 10 000 random localities along Polish railways, used in analyses published in Jasińska et al. Journal of Applied Ecology (2019). The databse is incomplete, however, as we do not own data provided by Polish Railways PKP.
DOI: 10.5061/dryad.gd4dg24/2
title: Basic data

description: The data in the file is is the basic test data of our research.
DOI: 10.5061/dryad.pm6v7nd/1
title: Training phase data

description: This file contains all choices for each bee during the 50 conditioned choices of the learning phase for both Group 1 and Group 2.
DOI: 10.5061/dryad.pm6v7nd/2
title: Testing phase data for Group 1

description: This file contains the individual choices bees made during each test for bees in Group 1.
DOI: 10.5061/dryad.pm6v7nd/3
title: Testing phase data for Group 2

description: This file contains the individual choices bees made during each test for bees in Group 2.
DOI: 10.5061/dryad.q2d60q3.1
title: Data from: Evolution of diet across the animal Tree of Life
DOI: 10.5061/dryad.q2d60q3.1/1.1
title: Supplementary Material
DOI: 10.5061/dryad.q2d60q3.1/2.1
title: Dataset S1

description: Dataset S1. Diet data for each taxon in the tree, and supporting references
DOI: 10.5061/dryad.q2d60q3.1/3.1
title: Dataset S2

description: Time-calibrated animal phylogeny used
DOI: 10.5061/dryad.q2d60q3.2
title: Data from: Evolution of diet across the animal Tree of Life
DOI: 10.5061/dryad.q2d60q3.2/1.2
title: Supplementary Material
DOI: 10.5061/dryad.q2d60q3.2/2.2
title: Dataset S1

description: Dataset S1. Diet data for each taxon in the tree, and supporting references
DOI: 10.5061/dryad.q2d60q3.2/3.2
title: Dataset S2

description: Time-calibrated animal phylogeny used
DOI: 10.5061/dryad.q2d60q3.2/4.2
title: Dataset S3

description: Diet data for each taxon in the tree, with data modified for four phyla
DOI: 10.5061/dryad.qn8p2n0/2
title: Merge analysis result table

description: Merge analysis result table of the four phenotypes discussed in the manuscript.
DOI: 10.5061/dryad.qn8p2n0/3
title: Phenotype expression correlation table

description: Table of the correlation between four interested phenotypes with baseline expression data from Mosedale 2017
DOI: 10.5441/001/1.rj857167/1
title: Sperm whales Gulf of California 2007-2008-gps

description: Irvine L, Palacios DM, Urbán, Mate B (2017) Sperm whale dive behavior characteristics derived from intermediate-duration archival tag data. Ecology and Evolution 258: 291–16. doi:10.1002/ece3.3322
description: Here, we describe the diving behavior of sperm whales (Physeter macrocephalus) using the Advanced Dive Behavior (ADB) tag, which records depth data at 1‐Hz resolution and GPS‐quality locations for over 1 month, before releasing from the whale for recovery. A total of 27 ADB tags were deployed on sperm whales in the central Gulf of California, Mexico, during spring 2007 and 2008, of which 10 were recovered for data download. Tracking durations of all tags ranged from 0 to 34.5 days (median = 2.3 days), and 0.6 to 26.6 days (median = 5.0 days) for recovered tags. Recovered tags recorded a median of 50.8 GPS‐quality locations and 42.6 dives per day. Dive summary metrics were generated for archived dives and were subsequently classified into six categories using hierarchical cluster analysis. A mean of 77% of archived dives per individual were one of four dive categories with median Maximum Dive Depth &gt;290 m (V‐shaped, Mid‐water, Benthic, or Variable), likely associated with foraging. Median Maximum Dive Depth was &lt;30 m for the other two categories (Short‐ and Long‐duration shallow dives), likely representing socializing or resting behavior. Most tagged whales remained near the tagging area during the tracking period, but one moved north of Isla Tiburón, where it appeared to regularly dive to, and travel along the seafloor. Three whales were tagged on the same day in 2007 and subsequently traveled in close proximity (&lt;1 km) for 2 days. During this period, the depth and timing of their dives were not coordinated, suggesting they were foraging on a vertically heterogeneous prey field. The multiweek dive records produced by ADB tags enabled us to generate a robust characterization of the diving behavior, activity budget, and individual variation for an important predator of the mesopelagos over temporal and spatial scales not previously possible.