cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/x4dwwfwtw3.2
title: TEM virus dataset

description: The dataset contains in total 1245 images of 22 virus classes captured with two different electron microscopes: an LEO (Zeiss, Oberkochen, Germany) with a Morada (Olympus) camera and a Tecnai 10 (FEI, Hillsboro, OR, USA) with a MegaView III (Olympus, Münster, Germany) camera. Before imaging, all samples were treated with 10% phosphate-buffered saline, placed on carbon-coated TEM grids, and stained with 2% phosphotungstic acid following standard procedures. The virus image dataset is challenging due to many reasons: limited annotation (a center point/line and not a full segmentation mask), a relatively small number of images per class, diffuse virus boundaries, imperfect focus, noise, different magnifications, and a large variation of the virus, background, and debris appearance. The virus classes in the dataset are strongly unbalanced both regarding the number of images (from 9 to 129) and in the number of virus particles (from 38 to 1934). The sizes of all RAW images are either 1376 x 1032 or 2048 x 2048 pixels (depending on with which electron microscope they were captured) but the pixel sizes vary from 0.26 to 5.57 nm, i.e., they were acquired at different magnifications. Each virus particle is annotated only with its approximate center, i.e., a single point for isolated spherical particles or a centerline in case of clustered viruses (beyond visual recognition of individual particles) or elongated virus. The annotations are in the form of coordinate points stored in a separate text file for each image. We also include image patches of 256 x 256 pixels (256 x 256 nm). The patches were cropped from rescaled images around the annotation points: the manually selected center points for spherical virus particles and all center-line vertices for elongated virus particles, except for the elongated particles that were annotated with a center-line composed of only 2 points (this would usually indicate an oval-shaped virus particle as in e.g. Orf) – in this case, we selected a new point between them for the center of the patch. This resulted in more image patches than particles in virus classes with elongated particles, particularly in Marburg, Ebola, Influenza, Lassa, and Nipah. As many annotation points were placed relatively close to each other (due to natural clustering of the virus particles and/or complex shapes of the elongated particles), the patches cropped from the same image sometimes overlap with each other to some degree. However, this did not lead to a data leakage between the training, validation, and test sets because they were established at the image level and special care was taken to remove images from the dataset that captured the same virus particles (i.e., overlapping images). We augmented the training set image patches by flipping and multiple 90 degrees rotations so that each class contains 736 input samples. Those classes that originally contained more than 736 patches were randomly reduced to this number.
DOI: 10.6084/m9.figshare.14535015
title: Test system B.xlsx

description: Test system B for case studies
DOI: 10.5281/zenodo.4736950
title: Danaus melanippus SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4736949
title: Danaus melanippus SPAdes preassembly

description: .
DOI: 10.25345/c5g52b
title: MassIVE MSV000087361 - Fungus-MN115950-CE-20210504_gnps
title: This work revealed the first tryptophan 2,3-dioxygenase (Tar13) and kynurenine formamidase (Tar16) enzymes that are selective for chlorinated substrates. The substrate scope of Tar13, Tar14, and Tar16 was examined and revealed intriguing promiscuity, thereby opening doors for the targeted engineering of these enzymes as useful biocatalysts
DOI: 10.5281/zenodo.4736974
title: Deinopsis erosa SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4736973
title: Deinopsis erosa SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4730807
title: pbmc single cell RNA-seq matrix

description: Single cell RNA-sequencing dataset of peripheral blood mononuclear cells (pbmc: T, B, NK and monocytes) extracted from two healthy donors. Cells labeled as C26 come from a 30 years old female and cells labeled as C27 come from a 53 years old male. Cells have been isolated from blood using ficoll. Samples were sequenced using standard 3' v3 chemistry protocols by 10x genomics. Cellranger v4.0.0 was used for the processing, and reads were aligned to the ensembl GRCg38 human genome (GRCg38_r98-ensembl_Sept2019). QC metrics were calculated on the count matrix generated by cellranger (filtered_feature_bc_matrix). Cells with less than 3 genes per cells, less than 500 reads per cell and more than 20% of mithocondrial genes were discarded. The processing steps was performed with the R package Seurat (https://satijalab.org/seurat/), including sample integration, data normalisation and scaling, dimensional reduction, and clustering. SCTransform method was adopted for the normalisation and scaling steps. The clustered cells were manually annotated using known cell type markers. Files content: - raw_dataset.csv: raw gene counts - normalized_dataset.csv: normalized gene counts (single cell matrix) - cell_types.csv: cell types identified from annotated cell clusters - cell_types_macro.csv: cell macro types - UMAP_coordinates.csv: 2d cell coordinates computed with UMAP algorithm in Seurat
DOI: 10.5281/zenodo.4728942
title: pbmc single cell RNA-seq matrix

description: Single cell RNA-sequencing dataset of peripheral blood mononuclear cells (pbmc: T, B, NK and monocytes) extracted from two healthy donors. Cells labeled as C26 come from a 30 years old female and cells labeled as C27 come from a 53 years old male. Cells have been isolated from blood using ficoll. Samples were sequenced using standard 3' v3 chemistry protocols by 10x genomics. Cellranger v4.0.0 was used for the processing, and reads were aligned to the ensembl GRCg38 human genome (GRCg38_r98-ensembl_Sept2019). QC metrics were calculated on the count matrix generated by cellranger (filtered_feature_bc_matrix). Cells with less than 3 genes per cells, less than 500 reads per cell and more than 20% of mithocondrial genes were discarded. The processing steps was performed with the R package Seurat (https://satijalab.org/seurat/), including sample integration, data normalisation and scaling, dimensional reduction, and clustering. SCTransform method was adopted for the normalisation and scaling steps. The clustered cells were manually annotated using known cell type markers. Files content: - raw_dataset.csv: raw gene counts - normalized_dataset.csv: normalized gene counts (single cell matrix) - cell_types.csv: cell types identified from annotated cell clusters - cell_types_macro.csv: cell macro types - UMAP_coordinates.csv: 2d cell coordinates computed with UMAP algorithm in Seurat
DOI: 10.5281/zenodo.4736978
title: Delias oraia SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4736977
title: Delias oraia SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4736971
title: Macapype validation, ucdavis_subject/sinai_subject

description: T1 image and brain_mask_T1 segmentation manuelle for Prime-DE, ucdavis_subject T2 image and brain_mask_T2 segmentation manuelle for Prime-DE,/sinai_subject
DOI: 10.17632/ggkgkts99n.1
title: Supporting materials: Kimura et al_G-cubed

description: Supporting movie file and Measurement raw data of grain-size distribution and XRD
DOI: 10.17632/fpv535fss7.1
title: DATASET for "Carotid Ultrasound Boundary Study (CUBS): an open multi-center analysis of computerized intima-media thickness measurement systems and their clinical impact"

description: This open source dataset contains the entire image dataset, clinical parameters, 3 manual segmentations, and 5 computerized segmentations used in the following work: "Carotid Ultrasound Boundary Study (CUBS): an open multi-center analysis of computerized intima-media thickness measurement systems and their clinical impact" published in Ultrasound in Medicine and Biology, DOI: 10.1016/j.ultrasmedbio.2021.03.022 ABSTRACT Common carotid intima-media thickness (CIMT) is a commonly used marker for atherosclerosis and is often computed in carotid ultrasound images. An analysis of different computerized techniques for CIMT measurement and their clinical impacts on the same patient dataset is lacking. Here we compared and assessed 5 computerized CIMT algorithms against 3 expert analyst manual measurements on a dataset of 1088 patients from two centers. Inter-/intra-observer variability was assessed, and the computerized CIMT values were compared to those manually obtained. The CIMT measurements were used to assess the correlation with clinical parameters, cardiovascular events prediction through a generalized linear model, and the Kaplan-Meier hazard ratio. CIMT measurements obtained with a skilled analyst’s segmentation and the computerized segmentation were comparable in all statistical analyses, suggesting they can be used interchangeably for CIMT quantification and clinical outcome investigation. The entire dataset used is made publicly available for the community to facilitate future studies here.
DOI: 10.6084/m9.figshare.7660556
title: 10 Downing Street: who’s next? Seemingly unrelated regressions to forecast UK election results

description: In recent years, the British polling industry has encountered difficulties in its attempts to measure voting intentions in important popular consultations, notably the 2014 referendum on Scottish independence, the 2015 UK general election, and the 2016 EU membership referendum. In such a context, it is extremely valuable to explore how different forecasting models that rely on political and economic variables can be used to predict the outcome of elections. In this paper, we propose such a model by introducing a political economy equation to estimate the vote share obtained by the incumbent party in UK general elections three months before the vote as well as a set of seemingly unrelated regressions (SUR) to forecast the results of the Official Opposition, the Liberal Democrats, and the remaining parties.
DOI: 10.6084/m9.figshare.7660556.v1
title: 10 Downing Street: who’s next? Seemingly unrelated regressions to forecast UK election results

description: In recent years, the British polling industry has encountered difficulties in its attempts to measure voting intentions in important popular consultations, notably the 2014 referendum on Scottish independence, the 2015 UK general election, and the 2016 EU membership referendum. In such a context, it is extremely valuable to explore how different forecasting models that rely on political and economic variables can be used to predict the outcome of elections. In this paper, we propose such a model by introducing a political economy equation to estimate the vote share obtained by the incumbent party in UK general elections three months before the vote as well as a set of seemingly unrelated regressions (SUR) to forecast the results of the Official Opposition, the Liberal Democrats, and the remaining parties.
DOI: 10.17863/cam.298
title: Research Data Supporting "RELPRON: A Relative Clause Evaluation Dataset for Compositional Distributional Semantics"

description: RELPRON is a dataset of subject and object relative clauses, for the evaluation of methods in compositional distributional semantics.
description: EPSRC (EP/I037512/1)
description: ERC (DisCoTex 306920)
DOI: 10.6084/m9.figshare.14459004
title: image_repository

description: Dataset description is provided in 'image_repository_Szabo_NG_2020.pdf'<br>
DOI: 10.6084/m9.figshare.14459004.v1
title: image_repository

description: Dataset description is provided in 'image_repository_Szabo_NG_2020.pdf'<br>
DOI: 10.5281/zenodo.4737008
title: Delias pasithoe SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737007
title: Delias pasithoe SPAdes preassembly

description: .
DOI: 10.5517/ccdc.csd.cc23w2lp
title: CCDC 1962442: Experimental Crystal Structure Determination

description: Related Article: Jun-Hao Wang, Meng-Na Li, Shu Yan, Ying Zhang, Cong-Cong Liang, Xian-Ming Zhang, Yue-Biao Zhang|2020|Inorg.Chem.|59|2961|doi:10.1021/acs.inorgchem.9b03316
DOI: 10.5517/ccdc.csd.cc24dgfg
title: CCDC 1978185: Experimental Crystal Structure Determination

description: Related Article: Danbo Wang, Xiaonan Kan, Chenyu Wu, Yuzhen Gong, Guangming Guo, Tongling Liang, Lan Wang, Zhibo Li, Yingjie Zhao|2020|Chem.Commun.|56|5223|doi:10.1039/D0CC01834A
DOI: 10.5517/ccdc.csd.cc24dkmr
title: CCDC 1978284: Experimental Crystal Structure Determination

description: Related Article: Nathaniel J. Schuster,  Leo A. Joyce,  Daniel W. Paley,  Fay Ng,  Michael L. Steigerwald,  Colin Nuckolls|2020|J.Am.Chem.Soc.|142|7066|doi:10.1021/jacs.0c00646
DOI: 10.5517/ccdc.csd.cc24n4dc
title: CCDC 1985562: Experimental Crystal Structure Determination

description: Related Article: Taokun Luo,  Kaiyuan Ni,  August Culbert,  Guangxu Lan,  Zhe Li,  Xiaomin Jiang,  Michael Kaufmann,  Wenbin Lin|2020|J.Am.Chem.Soc.|142|7334|doi:10.1021/jacs.0c02129
DOI: 10.5281/zenodo.4737014
title: Diadocidia ferruginosa SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737013
title: Diadocidia ferruginosa SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737023
title: Dinotopterus cunningtoni SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737022
title: Dinotopterus cunningtoni SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.14534724.v1
title: Mercury inputs into eastern China seas revealed by mercury isotope variations in sediment cores

description: (1) The measured concentrations and isotope compositions of mercury; (2) The calculated results for sedimentation and mercury influx; (3) The mixing model results for mercury source contributions in the three sediment cores collected from Eastern China Seas
DOI: 10.5281/zenodo.4737031
title: Dorylogaster longipes SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737030
title: Dorylogaster longipes SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.14534724.v2
title: Mercury inputs into eastern China seas revealed by mercury isotope variations in sediment cores

description: (1) The measured concentrations and isotope compositions of mercury; (2) The calculated results for sedimentation and mercury influx; (3) The mixing model results for mercury source contributions in the three sediment cores collected from Eastern China Seas
DOI: 10.5281/zenodo.4736804
title: TheyBuyForYou Knowledge Graph data dump

description: Data dump of the Knowledge Graph (KG) for the TheyBuyForYou project in RDF format containing procurement data and company data (for reconciled suppliers) for the period January 2019 to April 2021. In addition to the KG data dump in RDF, we have also made available the source data input for the KG, i.e., procurement data from OpenOpps and company data (for reconciled suppliers) from OpenCorporates in JSON format.
DOI: 10.6084/m9.figshare.14534724.v3
title: Mercury inputs into eastern China seas revealed by mercury isotope variations in sediment cores

description: (1) The measured concentrations and isotope compositions of mercury; (2) The calculated results for sedimentation and mercury influx; (3) The mixing model results for mercury source contributions in the three sediment cores collected from Eastern China Seas
DOI: 10.5281/zenodo.4737041
title: Drusilla canaliculata SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737040
title: Drusilla canaliculata SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.14534724.v4
title: Mercury inputs into eastern China seas revealed by mercury isotope variations in sediment cores

description: (1) The measured concentrations and isotope compositions of mercury; (2) The calculated results for sedimentation and mercury influx; (3) The mixing model results for mercury source contributions in the three sediment cores collected from Eastern China Seas
DOI: 10.34740/kaggle/dsv/2192081
title: Nepal ICU and Ventilators Occupancy for COVID
DOI: 10.6084/m9.figshare.14534724.v5
title: Mercury inputs into eastern China seas revealed by mercury isotope variations in sediment cores

description: (1) The measured concentrations and isotope compositions of mercury; (2) The calculated results for sedimentation and mercury influx; (3) The mixing model results for mercury source contributions in the three sediment cores collected from Eastern China Seas
DOI: 10.6084/m9.figshare.14534724
title: Mercury inputs into eastern China seas revealed by mercury isotope variations in sediment cores

description: (1) The measured concentrations and isotope compositions of mercury; (2) The calculated results for sedimentation and mercury influx; (3) The mixing model results for mercury source contributions in the three sediment cores collected from Eastern China Seas
DOI: 10.6084/m9.figshare.14534724.v6
title: Mercury inputs into eastern China seas revealed by mercury isotope variations in sediment cores

description: (1) The measured concentrations and isotope compositions of mercury; (2) The calculated results for sedimentation and mercury influx; (3) The mixing model results for mercury source contributions in the three sediment cores collected from Eastern China Seas
DOI: 10.24396/ordar-68
title: CO accretion - Gabriel Angel Pinto

description: Cr data
DOI: 10.6084/m9.figshare.14535033
title: Protective effects of gingival-derived mesenchymal stem cells against LPS-induced its sepsis and its complications

description: We attempted to isolate, culture, and characterize mouse gingival-derived mesenchymal stem cells (GMSCs), investigate whether GMSCs can protect against lipopolysaccharide (LPS)-induced sepsis and its complications, and related mechanisms including inflammation, oxidative stress, and the Warburg effect were explored.
DOI: 10.5281/zenodo.4737047
title: Echinosphaeria canescens SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.14535033.v2
title: Protective effects of gingival-derived mesenchymal stem cells against LPS-induced its sepsis and its complications

description: We attempted to isolate, culture, and characterize mouse gingival-derived mesenchymal stem cells (GMSCs), investigate whether GMSCs can protect against lipopolysaccharide (LPS)-induced sepsis and its complications, and related mechanisms including inflammation, oxidative stress, and the Warburg effect were explored.
DOI: 10.6084/m9.figshare.14535033.v1
title: Protective effects of gingival-derived mesenchymal stem cells against LPS-induced its sepsis and its complications

description: We attempted to isolate, culture, and characterize mouse gingival-derived mesenchymal stem cells (GMSCs), investigate whether GMSCs can protect against lipopolysaccharide (LPS)-induced sepsis and its complications, and related mechanisms including inflammation, oxidative stress, and the Warburg effect were explored.
DOI: 10.5281/zenodo.4737046
title: Echinosphaeria canescens SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737103
title: Ecitoglossa quadriceps SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737102
title: Ecitoglossa quadriceps SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737117
title: Ecitomorpha arachnoides SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737116
title: Ecitomorpha arachnoides SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737120
title: Supplement to: "Climate pacing of millennial sea-level change variability in the central and western Mediterranean" (Vacchi et al., 2021). Ver.1.01

description: <strong>Supplementary data for the paper: "Climate pacing of millennial sea-level change variability in the central and western Mediterranean" (Vacchi et al., 2021). Minor fixes with respect to the first upload.</strong>
DOI: 10.5281/zenodo.4726668
title: Supplement to: "Climate pacing of millennial sea-level change variability in the central and western Mediterranean" (Vacchi et al., 2021). Ver.1.01

description: <strong>Supplementary data for the paper: "Climate pacing of millennial sea-level change variability in the central and western Mediterranean" (Vacchi et al., 2021). Minor fixes with respect to the first upload.</strong>
DOI: 10.5281/zenodo.4737124
title: Ecitophya simulans SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737123
title: Ecitophya simulans SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737130
title: Enypniastes eximia SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737129
title: Enypniastes eximia SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737083
title: Mutation Analysis for Assessing End-to-End Web Tests

description: Data set of labelled web app UI mutants generated by MaewU
DOI: 10.5281/zenodo.4737082
title: Mutation Analysis for Assessing End-to-End Web Tests

description: Data set of labelled web app UI mutants generated by MaewU
DOI: 10.6084/m9.figshare.12998484
title: Taking it personal? Investigating regime personalization as an autocratic survival strategy

description: Personalist autocracy is on the rise globally. Dictators’ increasing tendency to concentrate power in their own hands has major implications for the political stability of autocracies. However, the exact nature of this impact is unclear. On the one hand, regime personalization has been linked to a reduction in the likelihood of coups. On the other hand, personalization has also been linked to an increase in the likelihood of civil war. This article reconciles these findings and argues that personalization involves a trade-off between different kinds of threats against a dictator. By increasing the degree of personalization, dictators reduce their vulnerability to insider challenges while at the same time increasing their vulnerability to outsider challenges. These expectations are corroborated by a time-series cross-sectional analysis of a global sample of autocratic regimes. The findings help shed light on recent instances of longstanding autocrats being overthrown during episodes of mass mobilization.
DOI: 10.6084/m9.figshare.12998484.v1
title: Taking it personal? Investigating regime personalization as an autocratic survival strategy

description: Personalist autocracy is on the rise globally. Dictators’ increasing tendency to concentrate power in their own hands has major implications for the political stability of autocracies. However, the exact nature of this impact is unclear. On the one hand, regime personalization has been linked to a reduction in the likelihood of coups. On the other hand, personalization has also been linked to an increase in the likelihood of civil war. This article reconciles these findings and argues that personalization involves a trade-off between different kinds of threats against a dictator. By increasing the degree of personalization, dictators reduce their vulnerability to insider challenges while at the same time increasing their vulnerability to outsider challenges. These expectations are corroborated by a time-series cross-sectional analysis of a global sample of autocratic regimes. The findings help shed light on recent instances of longstanding autocrats being overthrown during episodes of mass mobilization.
DOI: 10.5281/zenodo.4737144
title: Epimenia babai SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737143
title: Epimenia babai SPAdes preassembly

description: .