cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.00000007w
title: Flower strip effectiveness for pollinating insects in agricultural landscapes depends on established contrast in habitat quality: A meta-analysis

description: Flower strips have become a prevalent measure in agricultural landscapes
 to counteract biodiversity loss and especially promote pollinators.
 Although their benefits for pollinating insects have been frequently
 evaluated and reported, generalized conclusions about optimal settings for
 effective flower strips are still difficult. From the perspective of
 pollinators, flower strips vary distinctly in habitat quality, and the
 same applies for the control sites selected for scientific studies. In
 this study, we used a meta-analytic approach based on a systematic review
 of recent studies (2009-2020) to analyze the relationship between flower
 strip effectiveness for pollinators and the contrast in habitat quality
 between flower strips and control sites. We extracted 350 data entries
 from 29 out of 172 studies based on available data for richness or
 abundance of the pollinator taxa groups Apiformes, Lepidoptera and
 Syrphidae as response variables, for both flower strips and control
 treatments. All flower strips and control treatments were assigned a
 habitat quality score including information on spatial dimension, floral
 resources and management. Moreover, we included information on landscape
 complexity as measured by percent cover of semi-natural habitats in the
 studied landscape. In general, our results of meta-analytical models
 showed an increasing effect size of flower strips on pollinators for
 higher contrasts in habitat quality between flower strips and control
 treatments. This relationship was consistent across pollinator taxa and
 different levels of landscape complexity. Altogether, in terms of
 pollinator habitat quality, high-quality flower strips were more
 attractive than low-quality flower strips, and the reported effectiveness
 of flower strips decreased from low-quality to high-quality control
 treatments. We recommend that results of future studies evaluating flower
 strips for pollinators are always linked with the contrast in habitat
 quality between selected flower strips and control treatments.
description: This dataset was collected from a systematic literature review
 based on a search in ISI Web of Science (WoS) Core collection and Elsevier
 Scopus databases. In total, 350 data entries from 29 out of 172 studies
 were extracted based on screening titles, abstracts, and full texts. Each
 data entry corresponds to a paired result on species richness (richness
 data) or pollinator abundance (abundance data) as compared between
 treatments (flower strip – control) per publication source. Data was
 gathered from the main text, tables and appendixes of publications or
 extracted from graphical results according to the details in the published
 article Pérez-Sánchez et al. (2023).
description: The dataset includes csv files (richness_data.csv and
 abundance_data.csv together with data_legend.txt). Missing values due to
 missing data from literature sources are labeled as
 "NA".
DOI: 10.57745/oifpa5
title: eco2adapt_Soil SIR_T0_Lithuania

description: This dataset presents the results of soil SIR (Substrate Induced Respiration) analyses for Lithuanian LL (Marcinkonys) (Time zero - June 2023)
DOI: 10.11588/duerer.online.697a295db3b10
title: Hängeleuchter und Wappen, https://d-nb.info/gnd/1195238541
DOI: 10.5061/dryad.0vt4b8h4d
title: Data from: Urbanization alters the spatiotemporal dynamics of plant-pollinator networks in a tropical megacity

description: Urbanization is a major driver of biodiversity change but how it interacts
 with spatial and temporal gradients to influence the dynamics of
 plant-pollinator networks is poorly understood, especially in tropical
 urbanization hotspots. Here, we analyzed the drivers of environmental,
 spatial, and temporal turnover of plant-pollinator interactions
 (interaction β-diversity) along an urbanization gradient in Bengaluru, a
 South Indian megacity. The compositional turnover of plant-pollinator
 interactions differed more between seasons and with local urbanization
 intensity than with spatial distance, suggesting that seasonality and
 environmental filtering were more important than dispersal limitation for
 explaining plant-pollinator interaction β-diversity. Furthermore,
 urbanization amplified the seasonal dynamics of plant-pollinator
 interactions, with stronger temporal turnover in urban compared to rural
 sites, driven by greater turnover of native non-crop plant species (not
 managed by people). Our study demonstrates that environmental, spatial,
 and temporal gradients interact to shape the dynamics of plant-pollinator
 networks and urbanization can strongly amplify these dynamics.
DOI: 10.5061/dryad.vhhmgqp0g
title: Multiple dimensions of biodiversity mediate effects of temperature on invertebrate herbivory in a montane grassland

description: Invertebrate herbivores are important and diverse, and their abundance and
 impacts will likely shift under climate change. Yet, past studies of
 invertebrate herbivory have documented highly variable responses to
 changing temperature, making it challenging to predict the direction and
 magnitude of these shifts. One explanation for these responses is that
 changing environmental conditions drive concurrent changes in plant
 communities and herbivore traits. The impacts of changing temperature on
 herbivory might therefore depend on how temperature combines and interacts
 with characteristics of plant and herbivore communities. To test this, we
 surveyed damage to leaves by invertebrate herbivores on 4400 plant
 individuals in 220 sampling plots along a 1101-meter elevational gradient.
 Increasing temperature drove community-level herbivory via at least three
 overlapping mechanisms: increasing temperature directly reduced herbivory,
 indirectly affected herbivory by reducing plant-community phylogenetic
 diversity, and indirectly affected herbivory by altering the effects of
 plant-community functional and phylogenetic diversity on herbivory.
 Consequently, increasing plant functional diversity reduced herbivory in
 colder environments while increasing plant phylogenetic diversity
 increased herbivory in warmer environments. Moreover, different herbivore
 feeding guilds varied in their response to temperature and plant community
 composition. These results indicate that, even along a single elevation
 gradient in a single year, a variety of mechanisms can concurrently drive
 herbivory, thereby supporting the hypothesis that a universal response of
 herbivory to changing environmental conditions is unlikely to exist.
 Instead, our results highlight the importance of considering both plant
 and herbivore community context to predict how climate change will alter
 invertebrate herbivory.
DOI: 10.5061/dryad.cjsxksnbw
title: Advancing and retreating fronts in a changing climate: a percolation model of range shifts

description: Climate change causes considerable shifts in the geographic distribution
 of species worldwide. Most data on range movements, however, derive from
 relatively short periods, within which it is difficult to distinguish
 directional shifts from random fluctuations. For detecting a shift, it is
 indispensable to delineate the range precisely. We propose a new method
 for delineation based on percolation theory. We suggest marking the
 boundary between the connected and fragmented occurrence of the species
 (the hull). We demonstrate the advantages of this connectivity-based
 method on simulated examples in which a metapopulation is advancing vs.
 retreating along an environmental gradient with different velocities. The
 simulations show that the hull is a fractal and has the same dimension
 (7/4) even when the front is advancing or retreating relatively fast,
 compared to the generation time. It is particularly robust in the
 retreating (trailing) edge. Accordingly, we propose marking the range edge
 at the mean position of the hull, the 'connectivity limit' of
 the species. Theoretical considerations suggest that the position of the
 connectivity limit is statistically more reliable than those limits that
 are delineated according to the outermost occurrences, and the
 connectivity-based method is broadly applicable to real-life data.
description: The data were produced by computer simulations, written in Object
 Pascal, for the study of shifting ranges of species (see a detailed
 description in the paper). The data are density values
 of the hull edge as a function of the spreading rate
 (<em>lambda</em>) and of the velocity of environmental change
 (<em>v</em>). The first column shows
 the <em>lambda</em> values, while the top row contains the
 <em>v</em> values. Each density value is an average obtained
 from 100 independent repetitions.
description: No special tool is required. The file is a text file. The columns
 are tab-delimited.
DOI: 10.5061/dryad.5qfttdzbr
title: SNPs data (1,000 Genomes Project data only)

description: Background: The Precision ID Ancestry Panel with 165 SNP makers was unable
 to differentiate between mainland Japanese and Okinawa Japanese or to
 distinguish either of them from other East Asian populations. Aim: An
 Okinawa panel was developed with the aim of further separating Okinawa
 Japanese individuals from mainland Japanese and other Asian groups.
 Seventy-five SNPs were selected using the most informative markers from
 the literature. Further, 22 SNPs were selected to separate Okinawa
 Japanese at minimum SNPs. Subjects and Methods: Samples were collected
 from 48 unrelated individuals from mainland Japan and 46 unrelated
 residents of the Okinawa prefecture. Data were evaluated by STRUCTURE,
 principal component, and GenoGeographer analyses. Results: The 22 SNP set
 had similar levels of differentiation in STRUCTURE and PCA analyses as the
 75 SNP set. GenoGeographer analysis showed that out of the 46 Okinawa
 Japanese individuals, the 75 SNP and 22 SNP sets correctly assigned the
 Okinawan population as the most likely population of origin for 32 and 31
 individuals, respectively. Conclusion: Both SNP sets couldn’t completely
 differentiate between Okinawa Japanese and other Asian groups, however,
 these sets should be useful for crime investigation, in which the sample,
 cost and time are limited.
description: These data used in this study were collected from the 1,000 Genomes
 Project (https://www.genome.gov/27528684/1000-genomes-project). However,
 data of Mainland and Okinawa were not shown in this file. If you want
 these data, please contact me (hnakani@juntendo.ac.jp).
DOI: 10.15468/dl.24ujpe
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sorbus vexans)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Unknown evidence, Machine Observation, Occurrence evidence)",
 "Year is greater than or equal to 1971",
 "Year is less than or equal to 2024",
 "HasCoordinate is true"
 ]
}

 The dataset includes 48 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003559-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.98sf7m0pj
title: Data from: Partitioning variance in population growth for models with environmental and demographic stochasticity

description: How demographic factors lead to variation or change in growth rates can be
 investigated using life table response experiments (LTRE) based on
 structured population models. Traditionally, LTREs focused on decomposing
 the asymptotic growth rate, but more recently decompositions of annual
 ‘realized’ growth rates have gained in popularity. Realized LTREs have
 been used particularly to understand how variation in vital rates
 translates into variation in growth for populations under long-term study.
 For these, complete population models may be constructed by combining data
 in an integrated population model (IPM). IPMs are also used to investigate
 how temporal variation in environmental drivers affect vital rates. Such
 investigations have usually come down to estimating covariate coefficients
 for the effects of environmental variables on vital rates, but formal ways
 of assessing how they lead to variation in growth rates have been
 lacking.  We extend realized LTREs in two ways. First, we further
 partition the contributions from vital rates into contributions from
 temporally varying factors that affect them. The decomposition allows us
 to compare the resultant effect on the growth rate of different
 environmental factors that may each act via multiple vital rates. Second,
 we show how realized growth rates can be decomposed into separate
 components from environmental and demographic stochasticity. The latter is
 typically omitted in LTRE analyses. We illustrate how to use the approach
 in an IPM for data from a 26-year study on northern wheatears (Oenanthe
 oenanthe), a migratory passerine bird breeding in an agricultural
 landscape. For this population, consisting of around 50–120 breeding pairs
 per year, we partition variation in realized growth rates into
 environmental contributions from temperature, rainfall, population
 density, and unexplained random variation via multiple vital rates, and
 from demographic stochasticity. The case study suggests that variation in
 first-year survival via the random component, and adult survival via
 temperature are two main factors behind environmental variation in growth
 rates. More than half of the variation in growth rates is suggested to
 come from demographic stochasticity, demonstrating the importance of this
 factor for populations of moderate size.
description: The data are in the form of .Rdata files that can be opened with
 the R software.
DOI: 10.5061/dryad.1c59zw41w
title: Data from: Mesophotic Foraminiferal-Algal Nodules play a role in the Red Sea carbonate budget

description: Free-living mesophotic Foraminiferal-Algal Nodules (FANs) have been
 discovered along the coast of the northern Saudi Arabian Red Sea
 (NEOM region) where they form a novel benthic ecosystem
 in mesophotic water depths on the continental shelf. Being mostly
 spheroidal, the nodules are transported en masse down slope, into
 the deep water of the basin, where they stop accreting. Radiometric
 dating informs that FANs can be more than two thousand years old
 and that they collectively contribute up to 66 g m-2 year-1 to
 the mesophotic benthic carbonate budget and account for at least 980
 megatons of CaCO3, a substantial contribution considering the
 depauperate production of carbonate by other means in this
 light-limited environment. Our findings advance the knowledge of
 mesophotic biodiversity and carbonate production, and provide
 data that will inform conservation policies in the Saudi Arabian Red Sea.
description: This dataset contains the raw data for the accompanying published
 article: Bracchi, V.A., Purkis, S.J., Marchese, F. <em>et
 al.</em> Mesophotic foraminiferal-algal nodules play a role in the
 Red Sea carbonate budget. <em>Commun Earth
 Environ</em> <strong>4</strong>, 288 (2023). https://doi.org/10.1038/s43247-023-00944-w. Please see the README document ("README_Dataset-MesophoticRedSeaFANs_v2.md")
description: GIS software is necessary to use and view Shapefile and Raster
 data. We advise the use of either ESRI ArcGIS or QuantumGIS
 (open-source). An Image visualization tool is necessary
 to open JPG and TIFF file. Pre-installed PC, MAC, or Unix software are
 suggested.
DOI: 10.5061/dryad.hqbzkh1nd
title: Immature leaves are the dominant volatile sensing organs of maize

description: Plants perceive herbivory induced volatiles and respond to them by
 upregulating their defenses. So far, the organs responsible for volatile
 perception remain poorly described. Here, we show that responsiveness to
 the herbivory induced green leaf volatile (Z)-3-hexenyl acetate (HAC) in
 terms of volatile emission, transcriptional regulation and jasmonate
 defense hormone activation is largely constrained to younger maize leaves.
 Older leaves are much less sensitive to HAC. In a given leaf,
 responsiveness to HAC is high at immature developmental stages and drops
 off rapidly during maturation. Responsiveness to the non-volatile elicitor
 ZmPep3 shows an opposite pattern, demonstrating that this form of hyposmia
 (i.e. decreased sense of smell) is not due to a general defect in
 jasmonate defense signaling in mature leaves. Neither stomatal conductance
 nor leaf cuticle composition explain the unresponsiveness of older leaves
 to HAC, suggesting perception mechanisms upstream of jasmonate signaling
 as driving factors. Finally, we show that hyposmia in older leaves is not
 restricted to HAC, and extends to the full blend of herbivory induced
 volatiles. In conclusion, our work identifies immature maize leaves as
 dominant stress volatile sensing organs. The tight spatiotemporal control
 of volatile perception may facilitate within-plant defense signaling to
 protect young leaves, and may allow plants with complex architectures to
 explore the dynamic odor landscapes at the outer periphery of their
 shoots.
description: Data were collected as described in the manuscript. All data were
 saved as Microsoft Excel Comma Separated Values Files. 
description: All data were processed with Rstudio. Necessary information for
 data anslysis is either documented in the R code attached or self
 contained in the csv files.
DOI: 10.5061/dryad.m0cfxpp8k
title: Data from: Effect of light exposure on circular RNA and alternative splicing in Camelina sativa

description: Gene expression is controlled at multiple levels to ensure that the gene
 product is present at the right place, time, and quantity during
 development or in response to environmental stress. Transcriptional
 and post-transcriptional regulation of RNA abundance, processing,
 and translation control protein abundance by gene-specific and
 genome-wide mechanisms. Circular RNAs (circRNAs) have been identified as
 a new group of multifunctional gene-specific regulators. CircRNAs
 have been identified in over 20 plant species to date and although they
 appear to be highly conserved across the plant kingdom, sequencing of
 circRNA has not been performed for any oil seed crop. Among the
 many high-value oilseed crops, Camelina sativa has gained much
 attention for its potential use as a model species for studying oil
 biosynthesis. This is partly due to its close ancestral relationship to
 the well-established model species Arabidopsis thaliana, a system that has
 been especially useful in studying the mechanisms and functions of various
 circRNAs. As a recently diverged allohexaploid, Camelina sativa may be
 subject to even more complexity in regulation due to retention of
 multiple, highly-similar subgenomes with redundant gene copies. In this
 study, we performed deep sequencing in Camelina seedlings germinated under
 light or dark conditions to identify circRNA and examine correlated
 expression patterns of linear RNA cognates under different light regimes
 during seedling establishment.
description: Data are unprocessed 150 bp paired-end FASTQ reads generated from
 the sequencing run. FASTQ files were demultiplexed from the original base
 call files using Illumina's FASTQ generator analysis pipeline within
 Local Run Manager. 
description: Files labeled "5D" correspond to dark-treated seedlings
 harvested after 5 days of germination, as indicated in the README.txt
 file. Files labeled "7D" correspond to
 dark-treated seedlings harvested after 7 days of germination, as indicated
 in the README.txt file. Files labeled "5L"
 correspond to light-treated seedlings harvested after 5 days of
 germination, as indicated in the README.txt file. Files
 labeled "7L" correspond to light-treated seedlings harvested
 after 7 days of germination, as indicated in the README.txt
 file.
DOI: 10.15468/dl.rm3xgf
title: Occurrence Download

description: A dataset containing 23597 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Colombia, Peru, Venezuela (Bolivarian Republic of), Ecuador, Bolivia (Plurinational State of), Guyana, French Guiana, Brazil)",
 "OccurrenceStatus is Present",
 "TaxonKey is Mabea"
 ]
}

 The dataset includes 23597 records from 491 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003560-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14653362
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5061/dryad.cnp5hqc9n
title: Data from: Movement diversity and partial sympatry of coastal and Northeast Arctic cod ecotypes at high latitudes

description: Movement diversity within species represent an important, but often
 neglected, component of biodiversity that affects ecological and genetic
 interactions, as well as the productivity of exploited systems. By
 combining individual tracking data from acoustic telemetry with novel
 genetic analyses, we describe the movement diversity of two Atlantic
 cod Gadus morhua ecotypes in two high-latitude fjord systems: the
 highly migratory Northeast Arctic cod (NEA cod) that supports the largest
 cod fishery in the world, and the more sedentary Norwegian coastal cod,
 which is currently in a depleted state. As predicted, coastal cod
 displayed a higher level of fjord residency than NEA cod. Of the cod
 tagged during the spawning season, NEA cod left the fjords permanently to
 a greater extent and earlier compared to coastal cod, which to a greater
 extent remained resident and left the fjords temporarily. Despite this
 overall pattern, horizontal movements atypical for the ecotypes were
 common with some NEA cod remaining within the fjords year-round and some
 coastal cod displaying a low fjord fidelity. Fjord residency and exit
 timing also differed with spawning status and body size, with spawning cod
 and large individuals tagged during the feeding season more prone to leave
 the fjords and earlier than non-spawning and smaller individuals. While
 our results confirm a lower coastal dependency for NEA cod, they highlight
 a movement diversity within each ecotype and sympatric residency between
 ecotypes, previously undetected by population-level monitoring. This new
 knowledge is relevant for the management, which should base their
 fisheries advice for these interacting ecotypes on their habitat use and
 seasonal movements.