cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21014047.v1
title: List of production committee members.xlsx

description: The dataset contains the list of production committee members in the Japanese anime industry from Summer 2020 through Spring 2022. See the original article for more information.
DOI: 10.6084/m9.figshare.1496589.v1
title: Database - Length of incarceration and NCDs risk factors

description: Under request of PLOS ONE journal and in order to contribute to the transparency and replicability of research, the authors of the study “Cross-sectional association between length of incarceration and selected risk factors for non-communicable chronic diseases in two male prisons in Mexico City”; made the data available. Any other use than exploring or replicating the results of the afore-mentioned paper_inc is not authorized and shall not be used without previous authorization of the researchers. If you are interested in analyzing this database for original research purpose please contact Sergio Bautista-Arredondo (PI of the original study- sbautista@insp.mx) or Ruy Lopez-Ridaura (corresponding author- rlridaura@insp.mx)
DOI: 10.6084/m9.figshare.28259345.v2
title: Nutrient Data

description: Nutrient data (ammonium, nitrate, and nitrite) measured in pore water collected at two different depths (5cm,30cm) in sediment addition and control plots in a temperate RI salt marsh.
DOI: 10.60893/figshare.apl.28596608.v1
title: Supplement 1

description: The single-layer 1+3 oscillator coupling circuit diagram, its spatiotemporal response, and bio-inspired spider web multi-position decision-making modes. The images of pattern formation over time are shown under different conditions. The MATLAB program scripts for data processing are shown. In addition, the Poole-Frenkel model for NbOx is also used to validate the feasibility of key position detection functions.
DOI: 10.6084/m9.figshare.14511108.v1
title: Data from: Drought-exposure history increases complementarity between plant species in response to a subsequent drought

description: Growing threats from extreme climatic events and biodiversity loss have raised concerns about their interactive consequences for ecosystem functioning. Evidence suggests biodiversity can buffer ecosystem functioning during such climatic events. However, whether exposure to extreme climatic events will strengthen the biodiversity-dependent buffering effects for future generations remains elusive. We assess such transgenerational effects by exposing experimental grassland communities to eight recurrent summer droughts vs. ambient conditions in the field. Seed offspring of 12 species are subsequently grown individually, in monocultures, or in 2-species mixtures; and subjected to a subsequent drought event in the glasshouse. Comparing productivity between mixtures and monocultures, drought-selected plants show greater between-species complementarity than ambient-selected plants when recovering from the subsequent drought, causing stronger biodiversity effects on productivity and better recovery of drought-selected mixtures after the drought. These findings suggest exposure to recurrent climatic events can improve ecosystem responses to future events through transgenerational reinforcement of species complementarity.
DOI: 10.6084/m9.figshare.21369030.v1
title: Supplementary Material for: Temporal Bone Histopathology of Undiagnosed Dizziness in the Elderly

description: <b><i>Introduction:</i></b> Dizziness is a common disease. However, approximately 10–40% of patients were diagnosed unknown dizziness even though general, neurological, and otological examinations were performed. The aim of this otopathological study was to investigate the histopathology of the peripheral vestibular system of patients who suffered from undiagnosed dizziness. <b><i>Methods:</i></b> Eighteen temporal bone specimens from 9 patients with undiagnosed dizziness and 20 temporal bone specimens from age-matched 10 normal controls were selected. Cases with a history of dizziness and vertigo caused by particular peripheral vestibular disease and central etiology were excluded. Specimens of the vestibular system were carefully assessed by light microscopy. The basophilic deposits adhered to cupulae of the semicircular canals and the wall of the labyrinth were investigated. Scarpa’s ganglion cell counts in the vestibular nerves were performed. <b><i>Results:</i></b> Fifteen ears of 9 patients had the findings of vestibular pathology such as a basophilic deposit on cupula (8 ears), on canal wall (7 ears), vestibular nerve loss (8 ears), or vestibular atelectasis (2 ears). Unclear pathological findings such as crista neglecta, subepithelial deposits of the crista ampullaris, and adhesion of the cupula to dark cell area were demonstrated. The mean size of basophilic deposits seen in the patients (mean: 191 µm) was larger than that of latent deposits seen in the normal controls (mean: 101 µm; <i>p</i> = 0.01). <b><i>Conclusions:</i></b> We demonstrated some peripheral vestibular pathological findings such as deposit within the semicircular canal, vestibular nerve loss, and vestibular atelectasis and suggested the possible diagnosis of dizziness (benign paroxysmal positional vertigo, presbyvestibulopathy, vestibular atelectasis). These findings will provide a better insight into the multiple etiologies of the unknown dizziness in the elderly.
DOI: 10.6084/m9.figshare.7075502.v1
title: Bacterial cellulose to reinforce urethrovesical anastomosis. A translational study

description: Abstract Purpose: To evaluate the efficacy of the cellulosic exopolysaccharide membrane (CEM) as a urethral reinforcement for urethrovesical anastomosis. Methods: Twenty eight rabbits were submitted to urethrovesical anastomosis with or without CEM reinforcement. The animals were divided into 4 groups: C7, CEM7, C14 and CEM14: (C= only anastomosis or CEM = anastomosis + CEM), evaluated after 7 weeks, and 14 weeks. The biointegration and biocompatibility of CEM were evaluated according to stenosis, fistula, urethral wall thickness, urethral epithelium, rate of inflammation and vascularization. Results: Between the two experimental groups, the difference in the number of stenosis or urinary fistula was not statistically significant. The morphometric analysis revealed preservation of urethral lumen, well adhered CEM without extrusion, a controlled inflammatory process and implant vascularization. The urothelium height remained constant over time after CEM reinforcement and the membrane wall was thicker, statistically, after 14 weeks. Conclusion: The absence of extrusion, stenosis or urinary fistula after 14 weeks of urethrovesical anastomosis demonstrates cellulosic exopolysaccharide membrane biocompatibility and biointegration with tendency to a thicker wall.
DOI: 10.17632/6bgc2ynzb7
title: Data for: Reishi mushroom (Ganoderma lucidum) extract metabolomic analysis by CE-TOFMS and LC-TOFMS.

description: This dataset consists of metabolomic analysis results of compounds name and relative area law data from the Reishi mushroom (Ganoderma lucidum) extract. The Reishi mushroom has been used as a substance for Chinese herbal medicines. We studied the comprehensive analysis of components contained in Reishi mushroom by metabolomic analysis. The metabolomic analysis such as qualitative comprehensive analysis was performed on substances that had the same peak intensity as the components added in advance as internal standard substances (1,200 substances in the annotation list) via CE-TOFMS and LC-TOFMS.
DOI: 10.6084/m9.figshare.27922239.v1
title: Mosquito species abundance and composition data for 2022-23 mosquito season.

description: Mosquito species composition and abundance data collected across northern Victoria during the 2022-23 mosquito season
DOI: 10.6084/m9.figshare.7160048.v1
title: The super-gentrification of Park Slope, Brooklyn

description: Studies of classical gentrification typically focus on the embourgeoisement of neighborhoods and displacement of marginalized people. Recently, a new form of gentrification – super-gentrification – has emerged with the expansion of global finance capital, according to urban geographer Loretta Lees. Super-gentrification entails the further upscaling of already gentrified neighborhoods with the in-migration of upper-income residents and displacement of middle class residents, many of whom were among the initial gentrifiers. Despite the attention policy makers, urban planners, and the media are paying to the “middle class squeeze,” few quantitative studies of super-gentrification exist. Using data from the United States Decennial Census, American Community Survey, public residential sales transaction records, and real estate listings, this article sheds light on the landscape of super-gentrification and how to identify it with a quantitative analysis of changes in income, demographics, and housing affordability in the Park Slope neighborhood of Brooklyn, New York since 1970.
DOI: 10.6084/m9.figshare.12204740.v1
title: Table S1.xlsx

description: High-density genetic map including FISH markers<br>
DOI: 10.6084/m9.figshare.14284597.v1
title: Personal Belief in a Just World Scale: Adaptation and Evidence of Validity

description: Abstract Belief in a just world (BJW) has allowed for the comprehension of a series of social phenomena, which has lead to the development of measures for its measurement. The present article has the aim to present evidence of validity for a Portuguese version of Personal BJW Scale (BJW-P). 146 participants, most of them women (69%), with ages varying from 17 to 66 years (M = 27.79, DP = 13.67) answered PBJWP scale, four other scales (BJW-global, self-esteem, well-being, religiosity) for the convergent validity test and informed socio-demographic data. As in the original study, a uni-factorial solution and satisfactory internal consistency (α = 0.83) were found. Additionally, as expected, positive relations were found between PBJW and GBJW, self-esteem, and well-being, but only marginally significant with religiosity. Furthermore, positive relations of PBJW with income, as well as education, were found. The adapted version seems useful for research purposes.
DOI: 10.6084/m9.figshare.14515038.v1
title: Data for McFarlane and Pemberton Admixture Mapping

description: .bed, .fam, .map, .ped files, phenotypes and linkage map (from Johnston et al. 2017 (Susan E Johnston, Jisca Huisman, Philip A Ellis, Josephine M Pemberton, A High-Density Linkage Map Reveals Sexual Dimorphism in Recombination Landscapes in Red Deer (<em>Cervus elaphus</em>), <em>G3 Genes|Genomes|Genetics</em>, Volume 7, Issue 8, 1 August 2017, Pages 2859–2870, https://doi.org/10.1534/g3.117.044198), as well as .Q and .Q_se files from McFarlane et al. 2020 (McFarlane, S. Eryn, Darren C. Hunter, Helen V. Senn, Stephanie L. Smith, Rebecca Holland, Jisca Huisman, and Josephine M. Pemberton. "Increased genetic marker density reveals high levels of admixture between red deer and introduced Japanese sika in Kintyre, Scotland." <i>Evolutionary applications</i> 13, no. 2 (2020): 432-441.)
DOI: 10.6084/m9.figshare.14604957.v1
title: Supplementary Material for: Sex Differentiation in Amphibians: Effect of Temperature and Its Influence on Sex Reversal

description: The role of environmental factors in sexual differentiation in amphibians is not new. The effect of hormones or hormone-like compounds is widely demonstrated. However, the effect of temperature has traditionally been regarded as something anecdotal that occurs in extreme situations and not as a factor to be considered. The data currently available reveal a different situation. Sexual differentiation in some amphibian species can be altered even by small changes in temperature. On the other hand, although not proven, it is possible that temperature is related to the appearance of sex-reversed individuals in natural populations under conditions unrelated to environmental contaminants. According to this, temperature, through sex reversal (phenotypic sex opposed to genetic sex), could play an important role in the turnover of sex-determining genes and in the maintenance of homomorphic sex chromosomes in this group. Accordingly, and given the expected increase in global temperatures, growth and sexual differentiation in amphibians could easily be affected, altering the sex ratio in natural populations and posing major conservation challenges for a group in worldwide decline. It is therefore particularly urgent to understand the mechanism by which temperature affects sexual differentiation in amphibians.
DOI: 10.6084/m9.figshare.14466288.v1
title: Data and software for "Detecting OpenStreetMap missing buildings by transferring pre-trained deep neural networks"

description: Data and software for reproducing workflow described in a short conference paper "Detecting OpenStreetMap missing buildings by transferring pre-trained deep neural networks" submitted for AGILE 2021
DOI: 10.6084/m9.figshare.8074436.v1
title: Hourly average pollutant concentrations from RAMPs and BC monitor deployed by CMU in Rwanda

description: This is the data set used for a manuscript soon to be submitted for peer review.
DOI: 10.17632/hh3w3nc35b
title: Data for: Long-term automatic trap data reveal factors affecting diurnal flight patterns of the Mediterranean Fruit Fly

description: Data from the article "Long-term automatic trap data reveal factors affecting diurnal flight patterns of the Mediterranean Fruit Fly". The research hypothesis and methods are reported in the article.
DOI: 10.6084/m9.figshare.14814231.v1
title: Phylogeography of blue corals (genus Heliopora) across the Indo-West Pacific

description: To examine phylogenetic relationships within the genus <i>Heliopora</i>, we applied Multiplexed ISSR Genotyping by sequencing (MIG-seq) method for &gt;1,000 colonies across the Indo-West Pacific. All SNP datasheets for phylogenetic and population genetic analyses and two supplementary files in this study were uploaded here. <br>
DOI: 10.6084/m9.figshare.25766112.v1
title: figures and date

description: This document is a systematic review and single-arm meta-analysis examining the efficacy and safety of combining concurrent immune checkpoint inhibitors with radiotherapy or chemoradiotherapy for treating advanced non-small cell lung cancer (NSCLC).
DOI: 10.6084/m9.figshare.13490427.v1
title: Sequence Data

description: To verify some of the significant CpGs from the genome-wide analysis, we selected the target CpGs at the warfarin-associated genes. Thereafter, we used pyrosequencing to detect the methylation levels of CpGs with more samples in the validation cohort (low-dose group: 37; medium-dose group: 59; and high-dose group: 35). DNA was extracted from peripheral blood cells using the TIANamp Blood DNA Kit (Cat. #DP318, Tiangen, China) and DNA bisulfite conversion was conducted in a bisulfite batch with the EpiTect Bisulfite Kit (Cat. #59104, Qiagen, German); then, the converted DNA used as the template for PCR amplification. All primers for PCR and sequencing were designed by PyroMark Assay Design 2.0 Software (version 2.0.01.15; Qiagen, German). Pyrosequencing was carried out by PyroMark Q24 (Qiagen, German). The EpiTect Control DNA and Control DNA Set(Cat. #59695, QIAGEN; German) was used in the pyrosequencing. In addition,the PyroMark Q24 Validation Oligo(Cat. #979203, QIAGEN; German) was also used to check the performance of the PyroMark Q24 system.
DOI: 10.6084/m9.figshare.21291438.v1
title: Hedlund_NEG_Results_V2_Final_updatedNotes.xlsx

description: Metabolite identification for MassIVE dataset MSV000090480 in negative mode (https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=895e11f85bac44f2828880c77ff4ef8f)
DOI: 10.6084/m9.figshare.25809913.v1
title: Dataset of Focus Group Discussion Result from respondent: Emerging Procurement Competenciesfrom the Perspective of Boundary Role Persons in the Indonesian Context

description: The change in procurement methods from manual to digital should be expected to improve the competence of procurement officers; however, in reality, there are still many problems that indicate the low competence of procurement officials. Although there has been much research on digital procurement, there has not been a detailed explanation of what procurement officials feel and what competencies must be possessed to carry out procurement. For this reason, this qualitative study involving 12 procurement officials was conducted to explore what pain and pleasure procurement officials feel and what competencies they need. All structured and FGD interview data were transcribed and analyzed using a narrative approach. Then, the data is analyzed using inductive thematic analysis through four stages, from understanding the story to constructing a theme according to the research objectives. The novelty is that there are three main themes found in this research: pain, pleasure, and procurement competence. Procurement problems are perceived as changes in procurement rules and complexity, conflicts and violations, operational constraints and challenges. There are three procurement pleasures: job satisfaction and reward, conscientious work, effectiveness, rule compliance, and satisfactory results. It has also been found that procurement competence is divided into two sub-themes: core competency and support competency. Support for competency can be divided into firm and warm attitudes. The limitation of this study is that researchers only used triangulation methodology, but did not use triangulation of sources and researchers; therefore, the data and validity will be enriched if applied.
DOI: 10.6084/m9.figshare.3250540.v1
title: Comprehensive species-level dietary data for Class Mammalia

description: <b>See ReadMe file for a full description of the data.</b><br>In addition to the data we have uploaded two additional files:(1) the full R script (Olalla-Tarraga_et_al_R_script.R) used to generate the results reported in the publication associated with these data "Miguel Á. Olalla-Tárraga, Manuela González-Suárez, Rubén Bernardo-Madrid, Eloy Revilla, Fabricio Villalobos. 2016. Contrasting evidence of phylogenetic trophic niche conservatism in mammals worldwide. <i>Journal of Biogeography</i>. In press"<br>(2) The mammalian phylogeny used in the analyses (Fritz_tree.nex) generated by Fritz, S. A., Bininda-Emonds, O. R. P., & Purvis, A. (2009). Geographical variation in predictors of mammalian extinction risk: big is bad, but only in the tropics. Ecology Letters, 12, 538-549<br>
DOI: 10.17632/fp5469ww6x
title: A Study of m6Am sequesters PCF11 to suppress premature termination and drive neuroblastoma differentiation. An et al 2024

description: Original data for the figures presented in An et al. Mol Cell 2024.
Raw scans for blots, gels and microscopy images are provided for each subfigure individually.
DOI: 10.17632/vfkx5w53pn
title: A multinomial logistic regression model for the analysis of factors affecting military cadets’ ratings of nutrition

description: survey results
DOI: 10.6084/m9.figshare.12083154.v1
title: Raw Data for Deane et al 2020 JPhys

description: Data specific to the **Deane 2020 Journal of Physiology** publication:<br>Title: Ketamine anesthesia induces gain enhancement via recurrent excitation in granular input layers of the auditory cortexAuthors: Katrina E. Deane, Michael G. K. Brunk, Andrew W. Curran, Marina M. Zempeltzi, Jing Ma, Xiao Lin, Francesca Abela, Sümeyra Aksit, Matthias Deliano, Frank W. Ohl, Max F. K. Happelhttps://physoc.onlinelibrary.wiley.com/doi/10.1113/JP279705<br><br>Scripts and Pipeline for this project can be found at https://github.com/katdeane/Deane2020_JPhys<br>Necessary to run:Raw data should be placed in ../Deane2020_JPhys/Raw<br>If animal raw data files are placed correctly in ../Deane2020_JPhys/Raw, running the Pipeline_Deane2020 script will produce all figures and statistics from the publication. <br>If the user would like to run the pipeline from further data steps, they can download processed data sets from: https://cloud.lin-magdeburg.de/s/dBGczo86o9o3MK3 (the full set is 12GB).
DOI: 10.6084/m9.figshare.22331440.v1
title: Supplementary Material for: Non-pharmacological Interventions to Improve Physical Function in Patients with End-stage Renal Disease: A Network Meta-analysis

description: Introduction: Chronic kidney disease is estimated to become the fifth leading cause of death globally by 2040. Due to the high incidence of fatigue in patients with end-stage renal disease without reliable pharmacological treatments, more and more studies on non-pharmacological interventions to improve physical function appear, which might be the best approach, unknown. This study aims to compare and rank the efficacy of all known non-pharmacological interventions on improving physical function from multiple outcomes for adults with end-stage renal disease. Methods: This systematic review and network meta-analysis included searches of PubMed, Embase, CINAHL, and Cochrane Library from inception to September 1, 2022, for randomized controlled trials of non-pharmacological interventions to improve physical function in adults with end-stage renal disease. Literature screening, data extraction, and quality appraisal were performed systematically by two independent reviewers. The frequentist random-effect network meta-analysis was adopted to pool the evidence from five outcomes, namely 6-minute walk test, handgrip strength, knee extension strength, physical component summary, and mental component summary, respectively. Results: A total of 1921 citations were identified by this search, of which 44 eligible trials enrolled 2250 participants, and 16 interventions were identified. All subsequent figures refer to comparisons with usual care. For increasing walking distance, the combined resistance and aerobic exercise with virtual reality or music were the most effective interventions, with a mean difference plus 95% confidence interval of 90.69 (8.92 to 172.46) and 92.59 (23.13 to 162.06), respectively. Resistance exercise with blood flow restriction (8.13, 0.09 to 16.17) was the best treatment to improve handgrip strength. Combined resistance and aerobic exercise (11.93, 3.63 to 20.29) and whole-body vibration (6.46, 1.71 to 11.20) were associated with improving knee extension strength. For life quality, all treatment effects did not show statistically significant differences. Conclusions: It was found via network meta-analysis that combined resistance and aerobic exercise is the most effective intervention. Besides, if virtual reality or music is added to the training, there will be better results. Resistance exercise with blood flow restriction and whole-body vibration might be good alternative treatments for improving muscle strength. None of the interventions improved quality of life, suggesting a need for alternative interventions in this regard. The results of this study contribute evidence-based data to decision-making.
DOI: 10.6084/m9.figshare.25762281.v1
title: <i>Supplemental Figures S2-S4. CA IX does not affect the cytokine, red blood cell, and platelet profiles during NH</i><sub><em>4</em></sub><i>Cl feeding and pneumonia.</i>

description: Wild Type (WT) and carbonic anhydrase knockout (CA IX KO) mice were fed water with 0.5% sucrose (control) or 0.28M NH<sub>4</sub>Cl + 0.5% sucrose for 9 days. On day 7, saline or ExoY<sup>+</sup> (2.5x10<sup>6</sup> CFUs) was injected intratracheally and blood was collected 48 hours later for analysis of cytokines and complete blood count (CBC) with differentials. Open symbols represent female mice, and closed symbols represent male mice. Data represents means + SD. Three-way ANOVA and a Tukey’s post hoc test were used to compare groups. *Significant difference (<i>P</i> &lt; 0.05) from control.