cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22130177.v1
title: Gone with the wind: Negative genetic and progeny fitness consequences of habitat fragmentation in the wind pollinated dioecious tree Brosimum alicastrum

description: Habitat fragmentation negatively affects population size and mating patterns that directly impact progeny fitness and genetic diversity; however, little is known about the effects of habitat fragmentation on dioecious, wind pollinated trees. We assessed the effects of habitat fragmentation on population sex ratios, genetic diversity, gene flow, mating patterns and early progeny vigor in the tropical dioecious tree, <em>Brosimum alicastrum.</em> We conducted our study in three continuous and three fragmented forest sites in a Mexican tropical dry forest. We used eight microsatellite loci to characterize and compare the genetic diversity, gene flow via pollen distances and mean relatedness of progeny. We compared early progeny vigor parameters of seedlings growing under greenhouse conditions. Sex ratios did not deviate from 1:1 between habitat conditions, except for one population in a fragmented habitat, which was female biased. The genetic diversity of adult trees and their offspring was similar in both habitat conditions. Pollen gene flow distances were similar across habitat types; however, paternity correlations were greater in fragmented than in continuous habitats. Germination rates did not differ between habitat conditions; however, progeny from fragmented habitats produced fewer leaves and had a lower foliar area, total height, and total dry biomass than progeny from continuous habitats. Our results suggest that changes in mating patterns, as a consequence of habitat fragmentation, have negative effects on early progeny vigor. We conclude that negative habitat fragmentation effects on mating patterns and early progeny vigor may be a serious threat to the long-term persistence of tropical dioecious trees.
DOI: 10.6084/m9.figshare.28860671.v1
title: Habitat mosaic limits gene flow and promotes morphological adaptation in a generalist mammal species

description: Here, we address whether habitat mosaic influences the micro-spatial genetic structure of widespread generalist species, using the European wood mouse, <i>Apodemus sylvaticus</i>, as a model system. Genetic analyses were performed on samples collected from natural populations across three distinct habitat types (inner forest, forest edge, and adjacent hedgerow systems) lacking physical barriers to dispersal, at three matched sites. Results revealed genetic structure broadly among sites, but also between habitat types within sites.
DOI: 10.6084/m9.figshare.28387238.v1
title: Near-field data for Figures 3 and 5

description: Data for Figure 3 contain line scans of the near-field images collected over continuous Fourier crystal. Data for Figure 5 is the raw near-field data of the hBN edge.
DOI: 10.6084/m9.figshare.19499279.v1
title: patches and local annotations, slide 176, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.20395419.v1
title: 3D model and photographs of a theropod dinosaur track from Munchehagen (2015)

description: 3D model and photographs of a theropod dinosaur track from Munchehagen discovered and photographed in 2015. The track probably is an extension of trackway T3 described in Lallensack et al. 2016 (https://peerj.com/articles/2059/), but was not included in that study. <br> <br>
DOI: 10.6084/m9.figshare.24679947.v1
title: Supplementary Material for: Outcomes of ABO-incompatible living donor kidney transplantation compared to waiting or deceased donor kidney transplantation

description: Introduction: ABO-incompatible (ABOi) living donor kidney transplantation (LDKT) is considered only for patients who do not have an ABO-compatible (ABOc) LD. Therefore, a clinically practical question is whether to proceed with ABOi LDKT or remain on dialysis while waiting for ABOc deceased donor kidney transplantation (DDKT). However, this issue has not been addressed in Asian countries, where ABOi LDKT programs are more active than DDKT programs.
Methods: A total of 426 patients underwent ABOi-LDKT between 2010 and 2020 at Seoul National University Hospital and Severance Hospital, Korea. We compared outcomes between the ABOi-LDKT and the propensity-matched control groups (waiting-list-only group, n=1,278; waiting-list-or-ABOc-DDKT group, n=1,278).
Results: The ABOi-LDKT group showed a significantly better patient survival rate than the waiting-list-only group (P=0.001) and the waiting-list-or-ABOc-DDKT group (P=0.048). When the ABOi-LDKT group was categorized into a high-titer group (peak anti-ABO titer≥1:128) and a low-titer group (peak anti-ABO titer≤1:64), the low-titer group showed better patient survival rates than those of the waiting-list-or-ABOc-DDKT group (P=0.046) or the waiting-list-only group (P=0.004). In contrast, the high-titer ABOi-LDKT group showed no significant benefit in patient survival compared to the waiting-list-or-ABOc-DDKT group. Death-censored graft survival in the ABOi-LDKT group was not significantly different from that in the ABOc-DDKT group (P=0.563).
Conclusion: The ABOi-LDKT group has better outcomes than the waiting-list-or-ABOc-DDKT group in a country with a long waiting time.
DOI: 10.6084/m9.figshare.21926127.v3
title: EXCEL MODEL WITH WANING FOR POSTING REVISED v.2

description: This revised version of our earlier mixing model incorporates additional complexity including:<br>1. Waning immunity.2. Differential risk and infectivity by prior immune experience.3. Effects of hybrid immunity.4. Boosting.5. Diminished vaccine efficacy to reflect immune evasion with Omicron SARS-CoV-2 variants.
DOI: 10.6084/m9.figshare.25116941.v1
title: <b>In global forests, how species diversity affects the resistance and resilience of trees under short-term and persistent droughts.</b>

description: Raw datasets are available from public sources, which are used in the paper "In global forests, how species diversity affects the resistance and resilience of trees under short-term and persistent droughts". The datasets include:<br>raw data of tree-ring widths from https://www1.ncdc.noaa.gov/pub/data/paleo/treering/; the global patterns of vascular plant alpha diversity from https://doi.org/10.1038/s41467-022-32063-z; the gridded SPEI data (SPEIbase v2.9) from https://digital.csic.es/handle/10261/332007; the Climatic Research Unit (CRU), version TS 4.07 from https://crudata.uea.ac.uk/cru/data/hrg/; the Regridded Harmonized World Soil Database v1.2 from https://daac.ornl.gov/SOILS/guides/HWSD.html; compound topographic index from https://doi.org/10.5285/6b0c4358-2bf3-4924-aa8f-793d468b92be; wood density from https://datadryad.org/handle/10255/dryad.235; SLA from https://github.com/abhirupdatta/global_maps_of_plant_traits.Please cite the corresponding papers correctly and follow the data usage license when using these datasets.
DOI: 10.6084/m9.figshare.24064542.v1
title: data file.sav

description: · Golf player’s Self-Efficacy has a buffering effect of lowing Fear of Failure and Competitive State Anxiety· It was verified that the Fear of Failure among golfers did not directly have a detrimental impact on their performance; however, it did lead to heightened anxiety in competitive situations.· To enhance a golfer's performance, it is essential to boost their self-efficacy through the encouragement and assistance of significant others
DOI: 10.6084/m9.figshare.27130305.v1
title: 气象数据

description: Temperature, humidity, precipitation, wind speed
DOI: 10.6084/m9.figshare.6695315.v1
title: Additional file 7: of DeepCRISPR: optimized CRISPR guide RNA design by deep learning

description: The dataset from the human K562 cell type used for the study of sgRNA off-target profile prediction. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.7244966.v1
title: Analysis of generation and characterization of construction and demolition waste on construction sites in the city of Recife, Brazil

description: ABSTRACT In order to planning the Construction and Demolition Waste (CDW) management approach on a construction site, it is necessary to have a prior knowledge of what is being generated (qualitative analysis), the quantity that is being generated (quantitative analysis), and what is the proper final destination assigned to this material. This article proposes a new method to estimate CDW generation in Brazil from a qualitative and quantitative analysis of CDW generation in worksites. For the waste characterization, it was used the compression test with energy of Standard Proctor Test, granulometric analysis, microstructure analysis and direct shear tests. For the quantitative data collection, the research was limited to worksites of residential or commercial multi-story buildings, with reinforced concrete structure, which is the most common type used in Brazil. The data on the number of waste bins removed monthly, transportation and final disposal, CDW management costs, and constructive process were obtained from the construction companies.
DOI: 10.6084/m9.figshare.11828670.v1
title: Raw Data and Metrics for Learning Channels Study.xlsx

description: The excel document contains all the relevant raw data and metrics both for the prerequisite skills and the two multiplication tables.
DOI: 10.6084/m9.figshare.12968114.v3
title: Global surface NO2 concentrations 1990-2019

description: Annual Global surface level Nitrogen Dioxide (NO2) concentration levels (ppb) for years 1990-2020 ({1990,1995,2000}+{2005-2020}) provided at 1km spatial resolution. The data-set is results of combining multiple products such as a land use regression model (Larkin et al. 2017), OMI level 4 product, and other data-sets in order to adjust and correct for satellite pass time and cloud coverage. Please contact Arash Mohegh at mohegh@gwu.edu and Susan Anenberg at sanenberg@gwu.edu for more information. Additional methods descriptions will be available soon.
DOI: 10.6084/m9.figshare.5121628.v1
title: Supplementary Material for: Disorder-Specific Cognitive-Behavioral Therapy for Separation Anxiety Disorder in Young Children: A Randomized Waiting-List-Controlled Trial

description: <i>Background:</i> Separation anxiety disorder (SAD) is one of the earliest and most common mental disorders in childhood, and a strong predictor of adult psychopathology. Despite significant progress in psychotherapy research on childhood anxiety disorders, no randomized controlled trial has been conducted with a disorder-specific treatment program for young children suffering from SAD. <i>Methods:</i> Forty-three children (ages 5–7) with SAD and their parents were assigned to either a 16-session disorder-specific SAD treatment program including parent training and classical cognitive-behavioral therapy (CBT) components, or to a 12-week waiting list group. Categorical and/or continuous data for anxiety, impairment/distress and quality of life were collected at baseline, after treatment/waiting list condition, and at a 4-week follow-up. <i>Results:</i> Intention-to-treat analyses indicate that 76.19% of children allocated to the treatment group definitively no longer fulfilled DSM-IV criteria for SAD at follow-up, compared to 13.64% in the waiting list group. Between 91 and 100% of children rated themselves or were rated by their father, mother or therapist as very much or much improved on the global success rating immediately after treatment. Results indicated large time by treatment condition interaction effect sizes (d = 0.98–1.41) across informants for reduction of distress/avoidance in separation situations after the test for the treatment condition. Further, parents reported significant improvements in impairment/distress in the child’s major life domains and the child’s quality of life. Treatment gains were maintained at the 4-week follow-up assessment. <i>Conclusions:</i> Results indicate the short-term efficacy of a disorder-specific treatment approach for SAD, and are among the first to indicate that CBT programs work with young children.
DOI: 10.6084/m9.figshare.12768053.v1
title: Data_Sesin_etal_IEAM_2020

description: This zip file contains five files:<br><b>1 - R Script:</b> "R_Script_Sesin_et_al_IEAM_2020.R"Contains full R script used for data analysis<br><b>2 - Data file:</b> "Ammannia_Data.csv"Contains data used for analysis<br><b>3 - Data file:</b> "Sida_Data.csv"Contains data used for analysis<br><b>4 - Information file:</b> "Ammannia_MetaData.csv"Contains information explaining the data in file No. 2<br><b>5 - Information file:</b> "Sida_MetaData.csv"Contains information explaining the data in file No. 3
DOI: 10.6084/m9.figshare.22064672.v1
title: Feeling Lonely in a Crowd: The Interaction Between Social Media Popularity and Self-Reported Loneliness on the Extent of Disclosed Identity Information.

description: Datasets used in the paper.
DOI: 10.6084/m9.figshare.24306943.v1
title: <b>Factors Influencing the Choice of Depreciation Method for Valuation Purposes</b>

description: This is the dataset on the factors influencing valuers' choice of depreciation methods
DOI: 10.6084/m9.figshare.13318034.v1
title: Supplementary Material for: The Choice of Population and Outcomes in Neonatal Trials on Hyperbilirubinemia: Are They Relevant? An Analysis of Cochrane Neonatal Reviews

description: <b><i>Background:</i></b> Neonates with jaundice are usually managed according to their serum bilirubin despite an unclear overall correlation between bilirubin levels and patient-important outcomes (PIOs) such as kernicterus spectrum disorder (KSD). <b><i>Objectives:</i></b> We examined data from Cochrane Neonatal reviews to assess whether conditions that constituted KSD were included as key outcomes and how commonly they occurred in the population studied. <b><i>Methods:</i></b> We identified Cochrane reviews, published till November 2017 that evaluated interventions for neonatal jaundice (NNJ). We extracted the following information at the review and study levels: included population, outcomes assessed (in particular, whether PIOs such as KSD were listed as the primary outcomes), as well as their cumulative incidence in the reviews. <b><i>Results:</i></b> Out of 311 reviews, 11 evaluated interventions for NNJ with 78 randomized controlled trials (RCTs) included. Among the reviews, a total number of 148 outcomes were predefined and 30 (20.3%) were PIOs related to KSD, with 11 (36.7%) listed as primary outcomes. Among the 78 included RCTs (total participants = 8,232), 38 (48.7%) enrolled predominantly high-risk and 40 (51.3%) enrolled predominantly low-risk population. A total number of 431 outcomes were reported, and 40 (9.2%) were PIOs related to KSD (of which 37 were from studies with high-risk infants), with 13 (32.5%) listed as primary outcome. Cumulatively, no infant developed KSD across all studies. <b><i>Conclusions:</i></b> There is suboptimal representation of PIOs such as KSD in neonatal trials and Cochrane reviews on NNJ. Over half of the trials included populations with very low risk of KSD, which does not represent judicious use of resources. Amidst our continued search for a more reliable surrogate marker for NNJ, studies should evaluate the whole spectrum KSD alongside serum bilirubin in high-risk populations with sufficiently significant event rates, as this will make the trial methodologically feasible, with findings that will impact the population concerned.
DOI: 10.6084/m9.figshare.20317338.v1
title: Supplementary Material for: Procoagulant Activity of Blood and Microvesicles Is Disturbed by Pneumococcal Pneumolysin, Which Interacts with Coagulation Factors

description: The coagulation and contact systems are parts of the innate immune system as they prevent bleeding and dissemination of pathogens and also contribute to microbial killing by inflammatory reactions and the release of antimicrobial peptides. Here, we investigated the influence of <i>Streptococcus pneumoniae</i> on the coagulation and contact system. <i>S. pneumoniae</i> (pneumococci), but no other investigated streptococcal species, impairs coagulation of blood by autolysis and release of pneumolysin. Defective blood coagulation results from the lysis of tissue factor-producing mononuclear cells and their procoagulant microvesicles, which are the main trigger for blood coagulation during sepsis. In addition, pneumolysin binds coagulation and contact system factors, but this does not result in activation. Thus, pneumococci modulate activation of the coagulation system by releasing pneumolysin, which could potentiate lung injury during pneumonia.
DOI: 10.6084/m9.figshare.20510046.v1
title: Supplementary data for paper In situ crystallization of foliated, non-cotectic rocks on a magma chamber floor

description: Geochemical data and modelling
DOI: 10.6084/m9.figshare.22302826.v1
title: Supplementary Material for: Second primary malignancies in patients with a neuroendocrine neoplasm in England

description: Introduction Patients with neuroendocrine neoplasms (NENs) may often develop other malignancies. This study aimed to identify the frequency at which these second malignancies occurred in England. Methods Data was extracted from the National Cancer Registration and Analysis Service (NCRAS) on all patients diagnosed with a NEN at one of eight NEN site groups between 2012-2018: appendix, caecum, colon, lung, pancreas, rectum, small intestine and stomach. WHO International Classification of Disease edition 10 (ICD-10) codes were used to identify patients who had been diagnosed with an additional non-NEN cancer. Standardised incidence ratios (SIRs) for tumours diagnosed after the index NEN were produced for each non-NEN cancer type by sex and site. Results A total of 20,579 patients were included in the study. The most commonly occurring non-NEN cancers after NEN diagnosis were prostate (20%), lung (20%) and breast (15%). Statistically significant SIRs were observed for non-NEN cancer of the lung (SIR=1.85, 95%CI:1.55-2.22), colon (SIR=1.78, 95%CI:1.40-2.27), prostate (SIR=1.56, 95%CI:1.31-1.86), kidney (SIR=3.53, 95%CI:2.72-4.59) and thyroid (SIR=6.31, 95%CI:4.26-9.33). When stratified by sex, statistically significant SIRs remained for lung, renal, colon and thyroid tumours. Additionally, females had a statistically significant SIR for stomach cancer (2.65, 95%CI:1.26-5.57) and bladder cancer (SIR=2.61, 95%CI:1.36-5.02). Discussion/Conclusion This study found that patients with a NEN experienced a metachronous tumour of the lung, prostate, kidney, colon and thyroid at a higher rate than the general population of England. Surveillance and engagement in existing screening programmes is required to enable earlier diagnosis of second non-NEN tumours in these patients.
DOI: 10.17608/k6.auckland.27610557.v1
title: Updated labels for open source embryo morphokinetic dataset.

description: CSV file contains a new label (empty) for an open source embryo morphokinetic dataset[1]. Updating these labels was done with a EfficientNetV2 Large built upon a proprietary dataset. Relabeling these images had an outsized effect on model performance in our work[2].<br><br>[1] Gomez T, Feyeux M, Boulant J, Normand N, David L, Paul-Gilloteaux P, Fréour T, Mouchère H. A time-lapse embryo dataset for morphokinetic parameter prediction. Data Brief. 2022 May 11;42:108258. doi: 10.1016/j.dib.2022.108258. PMID: 35599827; PMCID: PMC9120221.<br><br>[2] Misaghi et. al. <b>Accurate Machine Learning Model for Human Embryo Morphokinetic Stage Detection</b>
DOI: 10.6084/m9.figshare.21701258.v1
title: Data on diaspora and political instability Does geographical distance matter.xlsx

description: Data on diaspora and political instability Does geographical distance matter
DOI: 10.6084/m9.figshare.27608085.v1
title: SGLT_FINAL_data_set.sav

description: <b>PROTECTIVE EFFECT OF SGLT2 INHIBITORS ON POST-CONTRAST MEDIUM INDUCED ACUTE KIDNEY INJURY IN DIABETIC AND CKD PATIENTS</b>
DOI: 10.6084/m9.figshare.7510952.v1
title: Flood damping by reservoirs: proposition of a graphical parametric method

description: ABSTRACT Flood reduction constitutes an important characteristic of surface reservoir design. Thus, to ensure that minimum safety standards are met, the Safety Dams Act was approved in 2010. Many multipurpose surface reservoirs are aging and getting out of the current technical standards. In Ceará State, Brazil, there are several dams built for many decades, with spillways sized by empirical formulae which are currently outdated. This article contributes to improve the understanding of the morphological and hydrological factors involved in the process of damping floods in reservoirs and the development of a simple application method that estimates the damping, from such factors. To do so, hydrological simulations of several scenarios representative of reservoir and hydrographic basins configurations were performed. As a result, the impact of each parameter on flood damping was determined. A graphical method was proposed in which all the morphological parameters of the basin and the reservoir were aggregated into a single dimensionless parameter - the Reservoir Damping Index (Φ). With the value of Φ calculated, it is possible to estimate the damping capacity of the reservoir. This method can be used for the design of new reservoirs or for the verification of reservoir spillways already constructed with other methodologies.
DOI: 10.6084/m9.figshare.25270075.v2
title: Cooperation and interdependence in global science funding

description: This project contains simulated data to validate the code for calculations presented in the paper <i>Cooperation and interdependence in global science funding. </i>You can access the paper at (https://arxiv.org/abs/2308.08630), and find the associated source code here (https://github.com/LiliMiaohub/national_science_funding).
DOI: 10.6084/m9.figshare.19793923.v1
title: English Language Course Exercise

description: The learners' goal is to identify each appropriate vocabulary in each picture using the scientific symbol for the music study
DOI: 10.6084/m9.figshare.19867207.v1
title: levine-CyTOF-annotated-celltypes-annData

description: Subset of Data from Data-driven phenotypic dissection of AML reveals progenitor-like cells that correlate with prognosis (10.1016/j.cell.2015.05.047).
DOI: 10.6084/m9.figshare.5924788.v2
title: Sessions data

description: One-to-many relational database between users (participants) and the lexical decision task. Columns are: exp_id (unique identifier), date, profile_id.
DOI: 10.6084/m9.figshare.12844391.v1
title: Lone males: Solitary and group-living male howler monkey (Alouatta palliata) behavioral ecology in a Costa Rican rainforest

description: group-living male vs. lone male howler monkey plant parts consumed, feeding tree DBH, resting tree DBH, howl rate, howl length, and howl triggers<br>
DOI: 10.6084/m9.figshare.21671201.v1
title: C4Evol Brassicaceae genomes

description: This project intends to sequence the genome and transcriptome of several Brassicaceae species, including C3 and C3-4 intermediates, and thereafter to pinpoint genetic differences between groups with different photosynthesis kinds. By cross-referencing genetic data with detailed phenotype evaluation, we aim to identify new genetic connections to the development of C3-4 intermediacy. Less...
DOI: 10.6084/m9.figshare.26048758.v2
title: Female Director Appointment and CEO Pay Raises: Supplementary Documents

description: These are supplementary materials for our study, titled as <i>When Does Appointing a Female Director Influence CEO Pay Raises? </i><i>Investigating the Conditions Unleashing Her Minority Influence in the Boardroom.</i> We have uploaded the datasets, program data and supplementary analysis results to enhance the transparency and rigor of our study during the review process.<br>