cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3204/pubdb-2025-05088
title: Fe2_230k, CCDC 2332929: Experimental Crystal Structure Determination (2024)

description: Cambridge Crystallographic Data Centre (2024). doi:10.5517/CCDC.CSD.CC2J9LS7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
description: Published by Cambridge Crystallographic Data Centre
DOI: 10.3204/pubdb-2025-05087
title: Fe2_240k, CCDC 2332928: Experimental Crystal Structure Determination (2024)

description: Cambridge Crystallographic Data Centre (2024). doi:10.5517/CCDC.CSD.CC2J9LR6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
description: Published by Cambridge Crystallographic Data Centre
DOI: 10.3204/pubdb-2025-05086
title: Fe2_220k, CCDC 2332927: Experimental Crystal Structure Determination (2024)

description: Cambridge Crystallographic Data Centre (2024). doi:10.5517/CCDC.CSD.CC2J9LQ5
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
description: Published by Cambridge Crystallographic Data Centre
DOI: 10.3204/pubdb-2025-05084
title: Fe2_210k, CCDC 2332925: Experimental Crystal Structure Determination (2014)

description: Cambridge Crystallographic Data Centre (2024). doi:10.5517/CCDC.CSD.CC2J9LN3
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
description: Published by Cambridge Crystallographic Data Centre
DOI: 10.3204/pubdb-2025-05083
title: Fe2_160k, CCDC 2332898: Experimental Crystal Structure Determination (2024)

description: Cambridge Crystallographic Data Centre (2024). doi:10.5517/CCDC.CSD.CC2J9KS6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
description: Published by Cambridge Crystallographic Data Centre
DOI: 10.5281/zenodo.17736141
title: Functional impact of dietary chitin upon Listeria monocytogenes pathogenesis

description: Chitin, the second most abundant polymer in nature, is recognized for its biocompatibility and diverse effects on microbes and the host. Despite its potential, the role of chitin against foodborne pathogens such as Listeria monocytogenes remains underexplored. Here, we show that chitin functions as an environmental signal that attenuates L. monocytogenes virulence and mitigates infection outcomes. Consistent with previous in vitro studies, exposure of L. monocytogenes to chitin resulted in downregulation of key virulence genes, accompanied by reduced adhesion and invasion of intestinal epithelial cells. While chitin can act as a pathogen-associated molecular pattern (PAMP), stimulation of murine macrophages revealed no excessive induction of IL-6 or TNF-α after 24 hours, indicating that it does not provoke detrimental inflammatory responses. In vivo, dietary supplementation with chitin significantly reduced bacterial burden in faeces and secondary organs within 24 hours post-infection. These protective effects were further enhanced when mice were challenged with chitin-pretreated bacteria, highlighting the combined importance of host nutritional context and pathogen pre-exposure. Chitin also modulated host responses, promoting early IL-6 production and selectively shaping gut microbiota, with enrichment of beneficial genera such as Alistipes, Eubacterium, and Duncaniella and suppression of pro-inflammatory Prevotella. Transcriptomic analyses revealed that L. monocytogenes responds to chitin by upregulating virR and dltD, indicative of an envelope stress response, though no direct link to virulence gene downregulation was observed. Collectively, these findings establish chitin as a dietary and bioactive molecule that simultaneously modulates pathogen virulence, host immunity, and microbial ecology, representing a promising strategy to mitigate gastrointestinal infection.
DOI: 10.5281/zenodo.17736142
title: Functional impact of dietary chitin upon Listeria monocytogenes pathogenesis

description: Chitin, the second most abundant polymer in nature, is recognized for its biocompatibility and diverse effects on microbes and the host. Despite its potential, the role of chitin against foodborne pathogens such as Listeria monocytogenes remains underexplored. Here, we show that chitin functions as an environmental signal that attenuates L. monocytogenes virulence and mitigates infection outcomes. Consistent with previous in vitro studies, exposure of L. monocytogenes to chitin resulted in downregulation of key virulence genes, accompanied by reduced adhesion and invasion of intestinal epithelial cells. While chitin can act as a pathogen-associated molecular pattern (PAMP), stimulation of murine macrophages revealed no excessive induction of IL-6 or TNF-α after 24 hours, indicating that it does not provoke detrimental inflammatory responses. In vivo, dietary supplementation with chitin significantly reduced bacterial burden in faeces and secondary organs within 24 hours post-infection. These protective effects were further enhanced when mice were challenged with chitin-pretreated bacteria, highlighting the combined importance of host nutritional context and pathogen pre-exposure. Chitin also modulated host responses, promoting early IL-6 production and selectively shaping gut microbiota, with enrichment of beneficial genera such as Alistipes, Eubacterium, and Duncaniella and suppression of pro-inflammatory Prevotella. Transcriptomic analyses revealed that L. monocytogenes responds to chitin by upregulating virR and dltD, indicative of an envelope stress response, though no direct link to virulence gene downregulation was observed. Collectively, these findings establish chitin as a dietary and bioactive molecule that simultaneously modulates pathogen virulence, host immunity, and microbial ecology, representing a promising strategy to mitigate gastrointestinal infection.
DOI: 10.3204/pubdb-2025-05081
title: Fe2_190k, CCDC 2332896: Experimental Crystal Structure Determination (2024)

description: Cambridge Crystallographic Data Centre (2024). doi:10.5517/CCDC.CSD.CC2J9KQ4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
description: Published by Cambridge Crystallographic Data Centre
DOI: 10.15468/dl.ry84r6
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Isthmospora F.L.Stevens, 1918",
 "Year is greater than or equal to 1991"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011623-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s4cc3a
title: Occurrence Download

description: A dataset containing 35283 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Linum bienne Mill.)"
 ]
}

 The dataset includes 35283 records from 1047 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011622-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jzgcqa
title: Occurrence Download

description: A dataset containing 3223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Papua New Guinea, Indonesia)",
 "TaxonKey is Aeschynanthus Jack"
 ]
}

 The dataset includes 3223 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011624-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23609646.v2
title: Dataset_Details.csv

description: This CSV file serves as a repository of information regarding the patients and includes birth weight, gestation age, and gender.
DOI: 10.15468/dl.r7tc62
title: Occurrence Download

description: A dataset containing 4973 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Paraserianthes lophantha (Willd.) I.C.Nielsen"
 ]
}

 The dataset includes 4973 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011625-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23609643.v8
title: Dataset_Labels.csv

description: This CSV file contains labels assigned to each patient based on their ROP fundus images. The images were reviewed by five individual specialists, denoted as A to E, who provided classifications in three different columns:a. "Status" with three conditions: "1 as normal," "2 as preplus," or "3 as plus." 0 means that status doesn’t specified.b. "Diagnostic" with three conditions: "no treatment," "revisit," or "treatment."c. "Stage" with assigned stage values ranging from one to five.Additionally, all five specialists, comprising a Medical Advisory Team, collectively reviewed the images and assigned the classifications of "1 as normal," "2 as preplus," and "3 as plus." The resulting consensus was recorded in the "Label" column of this file.
DOI: 10.15468/dl.kczhaj
title: Occurrence Download

description: A dataset containing 3683294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fulica atra Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 3683294 records from 2046 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011613-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13730107
title: Kleb. p. NCBI top 20 seq

description: This is a set of test data used for the Africa CDC Pathogen genomics klebsiella workshop
DOI: 10.5281/zenodo.13730108
title: Kleb. p. NCBI top 20 seq

description: This is a set of test data used for the Africa CDC Pathogen genomics klebsiella workshop
DOI: 10.15468/dl.2a8d2v
title: Occurrence Download

description: A dataset containing 489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Laticilla cinerascens (Walden, 1874))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 489 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001092-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmxqyw
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Columba argentina Bonaparte, 1855)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001093-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s23e3s
title: Occurrence Download

description: A dataset containing 442 species occurrences available in GBIF matching the query:
{
 "and" : [
 "KingdomKey is Plantae",
 "HasCoordinate is true",
 "Geometry POLYGON Z ((-43.44842 -13.53622 0, -43.37429 -13.45628 0, -43.45942 -13.42496 0, -43.68522 -13.24356 0, -44.21772 -13.37119 0, -44.22777 -13.47913 0, -43.70677 -13.3453 0, -43.51516 -13.51835 0, -43.44842 -13.53622 0))"
 ]
}

 The dataset includes 442 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001094-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmdcys
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sylvietta chapini Schouteden, 1947)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001095-240906103802322/datasets/export for details.
DOI: 10.15468/dl.7wt2tq
title: Occurrence Download

description: A dataset containing 5586995 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.25_1",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 5586995 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001086-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmpf64
title: Occurrence Download

description: A dataset containing 589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Odontophorus strophium (Gould, 1844))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 589 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001096-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gk9gtn
title: Occurrence Download

description: A dataset containing 2551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Accipiter gundlachi Lawrence, 1860)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2551 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001097-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u82nyw
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pomarea whitneyi Murphy & Mathews, 1928)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001098-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m4khbc
title: Occurrence Download

description: A dataset containing 309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arborophila orientalis (Horsfield, 1821))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 309 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001099-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkr287
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Perdicula manipurensis Hume, 1881)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 99 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001101-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myktn5
title: Occurrence Download

description: A dataset containing 45788 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aquila heliaca Savigny, 1809)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 45788 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001100-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r75qaw
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carpococcyx viridis Salvadori, 1879)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 109 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001102-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqnb5c
title: Occurrence Download

description: A dataset containing 1210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Scytalopus rodriguezi Krabbe, P.G.W.Salaman, A.Cortes, A.Quevedo, L.A.Ortega & C.D.Cadena, 2005)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1210 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001103-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rkzdmm
title: Occurrence Download

description: A dataset containing 948 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tragopan melanocephalus (J.E.Gray, 1829))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 948 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001104-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bp6ba
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sporophila maximiliani (Cabanis, 1851))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 74 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001105-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rr2hxn
title: Occurrence Download

description: A dataset containing 1948 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pitta nympha Temminck & Schlegel, 1850)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1948 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001106-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sahch6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Picoides ramsayi (Hargitt, 1881))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001108-240906103802322/datasets/export for details.
DOI: 10.15468/dl.me8xk3
title: Occurrence Download

description: A dataset containing 76209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Calidris tenuirostris (Horsfield, 1821))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 76209 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001107-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2xxkty
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Todiramphus reichenbachii Hartlaub, 1852)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 159 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001109-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.