cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3644060_d3
title: Additional file 4: of Lower IgG somatic hypermutation rates during acute dengue virus infection is compatible with a germinal center-independent B cell response

description: Neutralization summary of DENV RVPs by human sera. The 50 % neutralization titers (NT50) are shown as reciprocal serum dilutions. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3644063_d1
title: Additional file 2: of TRX-LOGOS - a graphical tool to demonstrate DNA information content dependent upon backbone dynamics in addition to base sequence

description: MS Excel spreadsheets containing 416 Bonferroni corrected t-tests conducted on all functionally confirmed consensus sequences in YEASTRACT database comparing the average information content obtained at the nucleobase level to that obtained at the phosphate linkage (i.e. backbone) level. An additional set of 416 tests were conducted on the 50 bp region flanking the confirmed consensus sites is included as well. (ZIP 13 kb)
DOI: 10.6084/m9.figshare.c.3644063_d2
title: Additional file 3: of TRX-LOGOS - a graphical tool to demonstrate DNA information content dependent upon backbone dynamics in addition to base sequence

description: TRX logo plots for general signatures ofÂ 16 transcription factor binding sites assembled fromÂ 416 Yeastract consensus sequences and collated according to JASPAR classification. (ZIP 1722 kb)
DOI: 10.6084/m9.figshare.c.3644063_d3
title: Additional file 1: of TRX-LOGOS - a graphical tool to demonstrate DNA information content dependent upon backbone dynamics in addition to base sequence

description: The TRX-LOGOS R module download complete with Perl wrapper scripts for batch processing and JASPAR query. Â Supporting files and documentation are also included. (ZIP 14 kb)
DOI: 10.6084/m9.figshare.c.3644072_d1
title: Additional file 2: of Simulation study of activities of daily living functions using online computerized adaptive testing

description: A CAT module in MS Excel. (XLS 6542Â kb)
DOI: 10.6084/m9.figshare.c.3644072_d2
title: Additional file 1: of Simulation study of activities of daily living functions using online computerized adaptive testing

description: The algorithm for determining Cutpoints and simulating data using MS Excel. (XLS 2362Â kb)
DOI: 10.6084/m9.figshare.c.3644099_d4
title: Additional file 3: Table S3. of Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

description: Expression values of all detected transcribed genes and non-coding RNAs reported as DESeq-normalized read counts and log2 fold changes. (XLSX 41091 kb)
DOI: 10.6084/m9.figshare.c.3644099_d7
title: Additional file 11: Table S11. of Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

description: Up-regulated and down-regulated WRKY genes. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3644099_d6
title: Additional file 10: Table S10. of Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

description: Up-regulated and down-regulated MAP kinase genes. (XLSX 15 kb)
DOI: 10.15468/dl.pqe3yz
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles maculipalpis Giles, 1902"
 ]
}

 The dataset includes 49 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034003-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644099_d10
title: Additional file 9: Table S9. of Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

description: Up-regulated and down-regulated germin-like protein genes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3644099_d13
title: Additional file 7: Table S7. of Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

description: Up-regulated and down-regulated chitinase genes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3644099_d14
title: Additional file 4: Table S4. of Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

description: Up-regulated and down-regulated cytochrome P450 genes. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3644099_d16
title: Additional file 6: Table S6. of Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

description: Up-regulated and down-regulated glycoside hydrolase genes. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3644099_d17
title: Additional file 5: Table S5. of Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

description: Up-regulated and down-regulated PR genes. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3644168_d1
title: MOESM1 of New perspectives on contributing factors to the monthly behavior of the aa geomagnetic index

description: Additional file 1. Time series of the aa index and moon luminosity from January 1868 through January 2015.
DOI: 10.15468/dl.zermpw
title: Occurrence Download

description: A dataset containing 1269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles maculipennis Meigen, 1818"
 ]
}

 The dataset includes 1269 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034004-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644210_d1
title: Additional file 8: Table S3. of Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

description: Summary of all information relevant to 2,938 transcripts. This file contains the following information: gene and transcript IDs, k-means and super-cluster assignments, various transcript features related to sequence length, conserved domains, CPC and CodeWise results related to coding potential, and Mercator-based annotation. Most information in other supplemental Tables is derived from this file to facilitate further data mining. (XLSX 1589 kb)
DOI: 10.6084/m9.figshare.c.3644210_d3
title: Additional file 13: Table S6. of Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

description: GCR1 and CPK11 sub-networks. The nearest neighbors of the known and novel GCR1 and CPK11 SVs were visualized in Cytoscape from the ArrayMining network. The following sub-networks are presented: (A) Known GCR1 SV. (B) Novel GCR1 SV. (C) Known CPK11 SV. (D) Novel CPK11 SV. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3644210_d8
title: Additional file 11: Table S5. of Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

description: Transcripts belonging to ABA-related genes and FUS3 regulon. Arabidopsis genes were obtained from [1, 51]. Mercator output for soybean transcripts was parsed to obtain potential Arabidopsis homologs. (A) These two datasets were cross-referenced to identify transcripts that were related to at least one of these regulators. (B) ABA-related transcripts; color-coding corresponds to standard assigned super-cluster colors. (XLSX 271 kb)
DOI: 10.6084/m9.figshare.c.3644210_d7
title: Additional file 6: Table S2. of Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

description: Domains in all expressed transcripts. Batch CD-Search was used for large-scale conserved domain search of all expressed transcripts during soybean embryo development. (XLSX 22764 kb)
DOI: 10.6084/m9.figshare.c.3644210_d9
title: Additional file 7: of Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

description: The â  noncoding.faâ   file. This FASTA file contains all lncRNA transcripts and their sequences identified in developing soybean embryos. (FA 32275 kb)
DOI: 10.6084/m9.figshare.c.3644210_d10
title: Additional file 10: Table S4. of Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

description: Pearson correlations between sense and antisense transcript pairs. (A) All identified sense and antisense transcript pairs. (B) Correlations between known sense (class “=”) and antisense (classes “x” and “s”) transcripts. (XLSX 199 kb)
DOI: 10.15468/dl.8eybuf
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles mediopunctatus (Theobald, 1903)"
 ]
}

 The dataset includes 189 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034005-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644252_d3
title: Additional file 1: of Signature of microRNA expression during osteogenic differentiation of bone marrow MSCs reveals a putative role of miR-335-5p in osteoarthritis

description: Data analysis of the expression profile of miRNA sequences, from the Sanger miRBase v14 using the Taqman OpenArray MicroRNA pools A and B. (XLS 2463 kb)
DOI: 10.6084/m9.figshare.c.3644252_d5
title: Additional file 6: of Signature of microRNA expression during osteogenic differentiation of bone marrow MSCs reveals a putative role of miR-335-5p in osteoarthritis

description: Extraction of all the experimentally validated microRNA-target interactions for hsa-miR-210 and hsa-miR-335-5p from the miRTarBase database. An extraction of miR-335 target genes related to the WNT pathway was also included. These belong to the Wnt signaling pathway, according to the enriched annotations provided in the Kyoto Encyclopedia of Genes and Genomes (KEGG) 04310. (XLS 2121 kb)
DOI: 10.6084/m9.figshare.c.3644255_d1
title: Additional file 6: Table S3. of An integrative genome-wide transcriptome reveals that candesartan is neuroprotective and a candidate therapeutic for Alzheimer’s disease

description: IPA disease and/or function list for genes altered in glutamate versus glutamate + candesartan groups. (XLSX 67 kb)
DOI: 10.6084/m9.figshare.c.3644255_d3
title: Additional file 11: Table S6. of An integrative genome-wide transcriptome reveals that candesartan is neuroprotective and a candidate therapeutic for Alzheimerâ  s disease

description: IPA of upstream regulators of genes preferentially expressed in cerebrovascular endothelial cells. Table S6 notes the upstream regulators of genes that are upregulated in Alzheimerâ  s disease and downregulated by candesartan in our neuronal cultures, and are of preferentially expressed in endothelial cells. (XLS 118 kb)
DOI: 10.6084/m9.figshare.c.3644255_d4
title: Additional file 7: Table S4. of An integrative genome-wide transcriptome reveals that candesartan is neuroprotective and a candidate therapeutic for Alzheimer’s disease

description: List of upstream regulation analysis for genes differentially expressed between glutamate and glutamate + candesartan. (XLSX 200 kb)
DOI: 10.6084/m9.figshare.c.3644255_d5
title: Additional file 2: Table S2. of An integrative genome-wide transcriptome reveals that candesartan is neuroprotective and a candidate therapeutic for Alzheimer’s disease

description: Differentially expressed genes in glutamate and glutamate + candesartan groups. Differentially expressed genes between glutamate versus glutamate + candesartan (spreadsheet #2) and between glutamate versus control (spreadsheet #3) and between candesartan versus control (spreadsheet #4). The common genes (spreadsheet #1) represent genes that are differentially expressed in both comparisons. There is a complete reversal of the effect of glutamate by candesartan on all the 501 genes in common. (XLSX 267 kb)
DOI: 10.6084/m9.figshare.c.3644255_d8
title: Additional file 14: Table S8. of An integrative genome-wide transcriptome reveals that candesartan is neuroprotective and a candidate therapeutic for Alzheimerâ  s disease

description: IPA of upstream regulators of genes preferentially expressed in neurons. Table S8 notes the upstream regulators of genes that are downregulated in Alzheimerâ  s disease and upregulated by candesartan in our neuronal cultures, and are preferentially expressed in human neurons. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3644255_d10
title: Additional file 9: Table S9. of An integrative genome-wide transcriptome reveals that candesartan is neuroprotective and a candidate therapeutic for Alzheimer’s disease

description: Complete GSEA analysis output of CGCs treated with glutamate and glutamate + candesartan and several inflammatory gene signatures and gene signature from postmortem Alzheimer’s disease patient and a mouse model of Alzheimer’s disease. (XLSX 4051 kb)
DOI: 10.15468/dl.d6zuty
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles melas Theobald, 1903"
 ]
}

 The dataset includes 141 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034006-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644291_d1
title: Additional file 3 of OncoNEM: inferring tumor evolution from single-cell sequencing data

description: Knitr file for case studies. An rnw file for reproducing the results of the case studies. (RNW 27.7 kb)
DOI: 10.6084/m9.figshare.c.3644291_d3
title: Additional file 2 of OncoNEM: inferring tumor evolution from single-cell sequencing data

description: Knitr file for simulation studies. An rnw file for reproducing the results of the simulation studies. (RNW 58.3 kb)
DOI: 10.6084/m9.figshare.c.3644297_d1
title: MOESM1 of Ear biometrics for patient identification in global health: a cross-sectional study to test the feasibility of a simplified algorithm

description: Additional file 1: Table S1. Ear biometrics dataset.
DOI: 10.6084/m9.figshare.c.3644336_d1
title: Additional file 1: of Age-driven modulation of tRNA-derived fragments in Drosophila and their potential targets

description: Significantly enriched GO terms in the analysis of potential targets of GlyGCC. AmiGO [32] output (showing enrichment of specific GO terms) is provided for the three GO catgories in three respective worksheets. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3644336_d2
title: Additional file 3: of Age-driven modulation of tRNA-derived fragments in Drosophila and their potential targets

description: Significantly enriched GO terms in the analysis of potential targets of mt:SerGCT. AmiGO [32] output (showing enrichment of specific GO terms) is provided for the three GO catgories in three respective worksheets. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3644336_d3
title: Additional file 2: of Age-driven modulation of tRNA-derived fragments in Drosophila and their potential targets

description: Significantly enriched GO terms in the analysis of potential targets of GlyTCC. AmiGO [32] output (showing enrichment of specific GO terms) is provided for the three GO catgories in three respective worksheets. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3644345_d1
title: Additional file 1: Table S1. of Control of Caenorhabditis elegans germ-line stem-cell cycling speed meets requirements of design to minimize mutation accumulation

description: Full results of pedigree-depth optimizations. Asterisks: control points that are fixed to constant values; LX-D: cell cycle length at distal end of DMMZ at stage LX (from L2 to L4 + 3 days); LX-P: cell cycle length at proximal end of MMZ at stage LX; α LX: ratio of cycle lengths between distal DMMZ and proximal MMZ at larval stage LX; CI: 95 % credible interval derived from MCMC analysis. Further details of MCMC results are given in Figure S7. See Table 1 for abbreviated results and “Methods” for derivation details. (XLS 33 kb)
DOI: 10.15468/dl.abzdue
title: Occurrence Download

description: A dataset containing 209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles merus Dönitz, 1902"
 ]
}

 The dataset includes 209 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034007-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644351_d2
title: Additional file 2: of Reducing amplification artifacts in high multiplex amplicon sequencing by using molecular barcodes

description: List of all primers used in the paper. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.c.3644354_d1
title: Additional file 1 of Functional coherence metrics in protein families

description: Average similarity as measured by six different metrics for each of the discrete levels of noise. (XLS 50 kb)
DOI: 10.6084/m9.figshare.c.3644357_d1
title: MOESM1 of Risk assessment of sheep welfare at small-scale slaughter in Nordic countries, comparing with large-scale slaughter

description: Additional file 1. Aggregated risk assessment data. Process steps, hazards and their estimated magnitudes and most-likely (ML) risks of poor sheep welfare at small-scale and large-scale slaughter in four Nordic countries; aggregated data from nine experts in 2012.
DOI: 10.6084/m9.figshare.c.3644399_d1
title: Additional file 2: of Training needs assessment of health care professionals in a developing country: the example of Saint Lucia

description: The dataset supporting the conclusions of this article. (XLS 441kb)
DOI: 10.6084/m9.figshare.c.3644420_d2
title: Additional file 5: Table S4. of ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly

description: Indel detection by ScanIndel with 2â  Ă â  150-bp amplicon sequencing reads. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3644420_d4
title: Additional file 1: Table S1. of ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly

description: A list of 138 validated deletions from the literature and 105 previously predicted novel sequence insertions identified by the 1000 Genomes Projects for human NIST standard NA12878. The genome coordinates are mapped to hg19. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3644420_d6
title: Additional file 4: Table S3. of ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly

description: Targeted regions of cancer gene panel. The genome coordinates are mapped to hg19. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3644420_d7
title: Additional file 2: Table S2. of ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly

description: Parameters used for Indel detection tools. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3644423_d3
title: Additional file 1: of Low reproductive skew despite high male-biased operational sex ratio in a glass frog with paternal care

description: Microsatellite genotypes of all adults and tadpoles. (TXT 39Â kb)
DOI: 10.15468/dl.22pbqj
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles moucheti Evans, 1925"
 ]
}

 The dataset includes 237 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034008-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbvcs3
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-185.27839 -36.89731,-185.27664 -36.89714,-185.27652 -36.89741,-185.27597 -36.89727,-185.27731 -36.89492,-185.27905 -36.89528,-185.27839 -36.89731))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 88 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001242-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.atq6qf
title: Occurrence Download

description: A dataset containing 1828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficus natalensis Hochst.",
 "Continent is Africa"
 ]
}

 The dataset includes 1828 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001244-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.45ae37
title: Occurrence Download

description: A dataset containing 1037 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "DatasetKey is one of (Brown University - Algae, University of Mary Washington Herbarium, Botany Division, Yale Peabody Museum, New York State Museum Algae Collection, The University and Jepson Herbaria -- Algae, Butler University - Algae, Drexel University, Academy of Natural Sciences - Algae, University of Maryland, Norton-Brown Herbarium)",
 "GadmGid is USA.24_1",
 "OccurrenceStatus is Present",
 "StateProvince is Minnesota"
 ]
}

 The dataset includes 1037 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001245-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cn39zf
title: Occurrence Download

description: A dataset containing 747 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficus platyphylla Delile",
 "Continent is Africa"
 ]
}

 The dataset includes 747 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001247-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15123109
title: Daily average CO₂ flux data of Ngoring Lake
DOI: 10.5281/zenodo.15123108
title: Daily average CO₂ flux data of Ngoring Lake