cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12858932
title: Additional file 1 of ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community

description: Additional file 1 Table S1: list of the bioinformatics software available for HPC@CINECA users on the three computational platforms (PICO, MARCONI and GALILEO) updated to May 2019. The software portfolio reflects the needs of the users since 2016 and is gradually enriched to meet the requirements of newly approved projects.
DOI: 10.6084/m9.figshare.12923032
title: Additional file 2 of Copy number variant hotspots in Han Taiwanese population induced pluripotent stem cell lines - lessons from establishing the Taiwan human disease iPSC Consortium Bank

description: Additional file 2. Table S1. Primer list for RT-PCR. Table S2. A List of Available Normal and Disease iPSCs in the Taiwan Disease iPSC Service Consortium Cell Bank. Table S3. The number of SNV, DEL, INS and MNV of iPSC-specific qualified variants among iPSCs identified by GATK HaplotypeCaller. Table S4. List of iPSC-specific CNV loci. Table S5. Summary of iPSC-specific CNV loci among various iPSC lines. Table S6. List of genes at the “polymorphic” CNV regions strongly associated with the reprogramming process
DOI: 10.6084/m9.figshare.12923047
title: Additional file 1 of Aspirin use and risk of breast cancer in African American women

description: Additional file 1 : Table S1. Multivariable-adjusted hazard ratios (95% CI) for associations of lagged aspirin use in the BWHS, overall and by ER status, 1997-2017. Table S2. Multivariable-adjusted hazard ratios (95% CI) for associations of current regular aspirin use relative to non-use of any NSAIDs in the BWHS, overall and by ER status, 19952017.
DOI: 10.6084/m9.figshare.12923047.v1
title: Additional file 1 of Aspirin use and risk of breast cancer in African American women

description: Additional file 1 : Table S1. Multivariable-adjusted hazard ratios (95% CI) for associations of lagged aspirin use in the BWHS, overall and by ER status, 1997-2017. Table S2. Multivariable-adjusted hazard ratios (95% CI) for associations of current regular aspirin use relative to non-use of any NSAIDs in the BWHS, overall and by ER status, 19952017.
DOI: 10.5281/zenodo.3925749
title: A global map of terrestrial habitat types

description: We provide a global spatially explicit characterization of 47 (version 001) terrestrial habitat types, as defined in the International Union for Conservation of Nature (IUCN) habitat classification scheme, which is widely used in ecological analyses, including for assessing species’ Area of Habitat. We produced this novel habitat map by creating a global decision tree that intersects the best currently available global data on land cover, climate and land use. The maps broaden our understanding of habitats globally, assist in constructing area of habitat (AOH) refinements and are relevant for broad-scale ecological studies and future IUCN Red List assessments. We hope that these data and outlined framework will spur further development of biodiversity-relevant habitat maps at global scales. An interactive interface helping to navigate the map can be found at on the Naturemap website ( https://explorer.naturemap.earth/map). Provided is the code to recreate the map (to made available soon), the global composite image at native -100m Copernicus resolution for level 1 and level 2 and layers of aggregated fractional cover (unit: fraction * 1000) at 1km for level 1 and level 2. <strong>Citation:</strong> Please cite the published paper and state the used version of the habitat map Jung, M., Dahal, P.R., Butchart, S.H.M., Donald, P.F., De Lamo, X., Lesiv, M., Kapos, V., Rondinini, C., Visconti, P., (2020). A global map of terrestrial habitat types. Sci. Data 7, 256. https://doi.org/10.1038/s41597-020-00599-8
description: The GEE code to recreate the map will be made available upon publication at (https://github.com/Martin-Jung/Habitatmapping) and will be directly included in future uploads of the map. Asset data used in GEE are directly available from the original sources (see methods), or in the case of the Forest Management layer can be shared upon reasonable request. Users are advised to check the data repository for newer versions of both code and map, as we consider this product a "living map" that can be improved in the future pending better data availability. We plan further updates as Copernicus land cover data becomes available up to 2019 and we also plan to create variants that rely on the potential distribution of land cover ( https://zenodo.org/record/3631254 ) and biomes (https://zenodo.org/record/3526620). We would like to thank the NatureMap project (naturemap.earth) for providing funding and Google for open access to the computational infrastructure that enabled the production of this map. This project has benefited from funding through the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 766417.
description: {"references": ["https://www.iucnredlist.org/resources/habitat-classification-scheme", "https://earthengine.google.com/", "https://naturemap.earth/", "https://unbiodiversitylab.org/"]}
DOI: 10.5519/qd.zlrfcily
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.z622jtxz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (26 records)
DOI: 10.6084/m9.figshare.12746105
title: Data for individual crow discrimination

description: Data for individual crow discrimination
DOI: 10.6084/m9.figshare.12746105.v1
title: Data for individual crow discrimination

description: Data for individual crow discrimination
DOI: 10.6084/m9.figshare.12922575.v1
title: Additional file 4 of Estimating completeness of national and subnational death reporting in Brazil: application of record linkage methods

description: Additional file 4. Number of deaths by source, Brazil and each state, 2015 and 2016.
DOI: 10.6084/m9.figshare.12923090.v1
title: China energy and CO2 emission account

description: China is now the largest CO<sub>2</sub> emitter in the world and plays the key role in global climate change mitigation. Here, we revisit the CO<sub>2</sub> emissions from fossil fuel combustion and cement production process in China during 2000-2019. Compared with previous estimates, we consider the emissions from the use of secondary fuels in our new estimates. Besides, due to the lag of publications of China Energy Statistical Yearbook for nearly two years, here we proposed an approach to obtain fast estimates of annual CO<sub>2</sub> emission estimates from fossil fuel combustion and cement process in 2018 and 2019. The dataset would be frequently updated when new China Energy Statistical Yearbook and China Statistical Communiqué are available.
DOI: 10.34740/kaggle/dsv/1465630
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6073/pasta/228e453d2b91ab518c8d0c0eac59eefe
title: Point-count bird censusing: long-term monitoring of bird abundance and diversity along the Salt River in the greater Phoenix metropolitan area, ongoing since 2013

description: Waterways are often the focus of restoration efforts in urban areas. In arid regions, passive discharge of urban water sources may stimulate the recovery or growth of wetland and riparian features in dewatered or ephemeral aquatic systems. In the greater Phoenix metropolitan area (GPMA), sections of the Salt and Gila Rivers have been the targets of active restoration through seeding, planting, and irrigation. At the same time, revegetation has occurred in some sections of the rivers in response to runoff from urban water sources (e.g., storm drains). This dataset catalogs the results of bird surveys conducted at several locations along the Salt River in and around the GPMA beginning in March 2013. Monitoring locations focus on reaches of the river with different characteristics, including: (1) urbanized with perennial water and actively restored (n=2 reaches), (2) urbanized with perennial water and passively restored (n=2 reaches), (3) urbanized with ephemeral water but not restored (n=2 reaches), and (4) non-urban reference areas with perennial water (n=1 reach). This program expands on bird monitoring that the CAP LTER conducts at other locations in and around the GPMA, and complements herpetological surveys that are performed at these locations along the Salt River where the bird surveys are performed. This is a long-term monitoring effort of the CAP LTER with on-going data collection.
DOI: 10.6084/m9.figshare.12923090
title: China energy and CO2 emission account

description: China is now the largest CO<sub>2</sub> emitter in the world and plays the key role in global climate change mitigation. Here, we revisit the CO<sub>2</sub> emissions from fossil fuel combustion and cement production process in China during 2000-2019. Compared with previous estimates, we consider the emissions from the use of secondary fuels in our new estimates. Besides, due to the lag of publications of China Energy Statistical Yearbook for nearly two years, here we proposed an approach to obtain fast estimates of annual CO<sub>2</sub> emission estimates from fossil fuel combustion and cement process in 2018 and 2019. The dataset would be frequently updated when new China Energy Statistical Yearbook and China Statistical Communiqué are available.
DOI: 10.6084/m9.figshare.12923090.v2
title: China energy and CO2 emission account

description: China is now the largest CO<sub>2</sub> emitter in the world and plays the key role in global climate change mitigation. Here, we revisit the CO<sub>2</sub> emissions from fossil fuel combustion and cement production process in China during 2000-2019. Compared with previous estimates, we consider the emissions from the use of secondary fuels in our new estimates. Besides, due to the lag of publications of China Energy Statistical Yearbook for nearly two years, here we proposed an approach to obtain fast estimates of annual CO<sub>2</sub> emission estimates from fossil fuel combustion and cement process in 2018 and 2019. The dataset would be frequently updated when new China Energy Statistical Yearbook and China Statistical Communiqué are available.
DOI: 10.6084/m9.figshare.16531033.v1
title: Ancient genomes from a rural site in Imperial Rome (1<sup>st</sup>–3<sup>rd</sup> cent. CE): a genetic junction in the Roman Empire

description: Rome became the prosperous Capital of the Roman Empire through the political and military conquests of neighbouring areas. People were able to move Romeward modifying the Rome area’s demographic structure. However, the genomic evidence for the population of one of the broadest Empires in antiquity has been sparse until recently. The genomic analysis of people buried in Quarto Cappello del Prete (QCP) necropolis was carried out to help elucidate the genomic structure of Imperial Rome inhabitants. We recruited twenty-five individuals from QCP for ancient DNA analysis through whole-genome sequencing. Multiple investigations were carried out to unveil the genetic components featuring in the studied samples and the community’s putative demographic structure. We generated reliable whole-genome data for 7 samples surviving quality controls. The distribution of Imperial Romans from QCP partly overlaps with present-day Southern Mediterranean and Southern-Near Eastern populations. The genomic legacy with the south-eastern shores of the Mediterranean Sea and the Central and Western Northern-African coast funerary influence pave the way for considering people buried in QCP as resembling a Punic-derived human group.
DOI: 10.6084/m9.figshare.16531036.v1
title: More data on ancient human mitogenome variability in Italy: new mitochondrial genome sequences from three Upper Palaeolithic burials

description: Recently, the study of mitochondrial variability in ancient humans has allowed the definition of population dynamics that characterised Europe in the Late Pleistocene and Early Holocene. Despite the abundance of sites and skeletal remains few data are available for Italy. We reconstructed the mitochondrial genomes of three Upper Palaeolithic individuals for some of the most important Italian archaeological contexts: Paglicci (South-Eastern Italy), San Teodoro (South-Western Italy) and Arene Candide (North-Western Italy) caves. We explored the phylogenetic relationships of the three mitogenomes in the context of Western Eurasian ancient and modern variability. Paglicci 12 belongs to sub-haplogroup U8c, described in only two other Gravettian individuals; San Teodoro 2 harbours a U2'3'4'7'8'9 sequence, the only lineage found in Sicily during the Late Pleistocene and Early Holocene; Arene Candide 16 displays an ancestral U5b1 haplotype already detected in other Late Pleistocene hunter-gatherers from Central Europe. Regional genetic continuity is highlighted in the Gravettian groups that succeeded in Paglicci. Data from one of the oldest human remains from Sicily reinforce the hypothesis that Epigravettian groups carrying U2'3'4'7'8'9 could be the first inhabitants of the island. The first pre-Neolithic mitogenome from North-Western Italy, sequenced here, shows more affinity with continental Europe than with the Italian peninsula.
DOI: 10.6084/m9.figshare.16531036
title: More data on ancient human mitogenome variability in Italy: new mitochondrial genome sequences from three Upper Palaeolithic burials

description: Recently, the study of mitochondrial variability in ancient humans has allowed the definition of population dynamics that characterised Europe in the Late Pleistocene and Early Holocene. Despite the abundance of sites and skeletal remains few data are available for Italy. We reconstructed the mitochondrial genomes of three Upper Palaeolithic individuals for some of the most important Italian archaeological contexts: Paglicci (South-Eastern Italy), San Teodoro (South-Western Italy) and Arene Candide (North-Western Italy) caves. We explored the phylogenetic relationships of the three mitogenomes in the context of Western Eurasian ancient and modern variability. Paglicci 12 belongs to sub-haplogroup U8c, described in only two other Gravettian individuals; San Teodoro 2 harbours a U2'3'4'7'8'9 sequence, the only lineage found in Sicily during the Late Pleistocene and Early Holocene; Arene Candide 16 displays an ancestral U5b1 haplotype already detected in other Late Pleistocene hunter-gatherers from Central Europe. Regional genetic continuity is highlighted in the Gravettian groups that succeeded in Paglicci. Data from one of the oldest human remains from Sicily reinforce the hypothesis that Epigravettian groups carrying U2'3'4'7'8'9 could be the first inhabitants of the island. The first pre-Neolithic mitogenome from North-Western Italy, sequenced here, shows more affinity with continental Europe than with the Italian peninsula.
DOI: 10.6084/m9.figshare.16531033
title: Ancient genomes from a rural site in Imperial Rome (1<sup>st</sup>–3<sup>rd</sup> cent. CE): a genetic junction in the Roman Empire

description: Rome became the prosperous Capital of the Roman Empire through the political and military conquests of neighbouring areas. People were able to move Romeward modifying the Rome area’s demographic structure. However, the genomic evidence for the population of one of the broadest Empires in antiquity has been sparse until recently. The genomic analysis of people buried in Quarto Cappello del Prete (QCP) necropolis was carried out to help elucidate the genomic structure of Imperial Rome inhabitants. We recruited twenty-five individuals from QCP for ancient DNA analysis through whole-genome sequencing. Multiple investigations were carried out to unveil the genetic components featuring in the studied samples and the community’s putative demographic structure. We generated reliable whole-genome data for 7 samples surviving quality controls. The distribution of Imperial Romans from QCP partly overlaps with present-day Southern Mediterranean and Southern-Near Eastern populations. The genomic legacy with the south-eastern shores of the Mediterranean Sea and the Central and Western Northern-African coast funerary influence pave the way for considering people buried in QCP as resembling a Punic-derived human group.
DOI: 10.5281/zenodo.5524113
title: Datasets for "LAPS v1.0.0: Lagrangian Advection of Particles at Sea, a Matlabprogram to simulate the displacement of particles in the ocean."

description: The data, run results and analysis scripts used to produce all of the results presented in the paper "LAPS v1.0.0: Lagrangian Advection of Particles at Sea, a Matlab program to simulate the displacement of particles in the ocean."
DOI: 10.5281/zenodo.5524112
title: Datasets for "LAPS v1.0.0: Lagrangian Advection of Particles at Sea, a Matlabprogram to simulate the displacement of particles in the ocean."

description: The data, run results and analysis scripts used to produce all of the results presented in the paper "LAPS v1.0.0: Lagrangian Advection of Particles at Sea, a Matlab program to simulate the displacement of particles in the ocean."
DOI: 10.5281/zenodo.5524137
title: Dataset: Environmental Impact on the Long-Term Connectivity and Link Quality of an Outdoor LoRa Network

description: This repository contains the long-term connectivity and link quality dataset collected on ChirpBox over 4 months (May -- September 2021) in the city of Shanghai, China. In addition to the dataset itself, we provide evaluation scripts for data analysis and visualization, in order to facilitate data exploration and re-use. To make it clear how to use the scripts, we provide a <em>Jupyter notebook -- </em> <strong>dataset.ipynb</strong> for dataset visualization. Please check the notebook viewer for a preview. <strong>List of files:</strong> <em>dataset_03052021_15092021.csv</em> The dataset includes LoRa connectivity and link quality, as well as environmental information, collected from May 3 to September 15, 2021. <em>data_analysis.py</em> The script for dataset analysis and visualization. One can use the functions in this script to derive network-level statistics (e.g., in terms of average number of correctly-exchanged packets), link-level statistics (e.g., in terms of SNR, RSS, and PRR), and node-level statistics(e.g., in terms of number of neighbours and temperature evolution over time). <em>metadata_processing.py</em> The script for pre-processing metadata into CSV files. One can use the functions in this script to convert metadata for each measurement saved in TXT and JSON formats to CSV files that include attributes such as link quality, connectivity, and environmental information, an example of which is <strong>dataset_03052021_15092021.csv</strong>. <em>dataset.ipynb </em> The Jupiter notebook contains examples of visualization and metadata pre-processing of datasets with functions in <strong>data_analysis.py</strong> and <strong>metadata_processing.py</strong>. <em>topology_map.png</em> The node deployment map used to create topology figures. A usage example is <strong>Figure 1</strong> shown in the notebook <strong>dataset.ipynb</strong>. <em>dataset_metadata.zip</em> The dataset metadata is stored in TXT and JSON formats. Among them, link quality, connectivity and on-board sensor data are stored in TXT files and weather information are stored in JOSN files. <em>README.md</em> The README.md explains all the files in this repository and gives some examples of how to use the provided scripts to analyze the dataset.
DOI: 10.5281/zenodo.5159426
title: Increased risk of near term global warming due to a recent AMOC weakening

description: This archive contains data from the IPSL-CM6A-LR ensemble of extended historical simulations dataset used in the main Figure of the publication: Bonnet et al., 2021, Nature Communication, "Increased risk of near term global warming due to a recent AMOC weakening". Corresponding authors: Rémy Bonnet, rbonnet@ipsl.fr Description of the archive: - Atlantic Meridional Overturning Circulation (AMOC in Sv) time series calculated as the maximum of the Atlantic meridional stream function at 20°N-50°N (AMOC_IPSL-EHS_1850-2059.nc and AMOC_yr_IPSL-EHS_1900-2018.nc) - Global near-Surface Air Temperature (GSAT in K) time series (GSAT_IPSL-EHS_1850-2059.nc and GSAT_yr_IPSL-EHS_1900-2018.nc) - Time series of the four AMOC fingerprints used: Sea Surface Temperature over the North Atlantic Subpolar Gyre (K): SST_SPG_NAtl_relative_GlobalSST_IPSL-EHS_1900-2018.nc The Atlantic Multidecadal Variability index (K): AMV_idx_historical_IPSL-CM6A-LR_1900-2018.nc A new index based on the (0-700 m) Ocean Heat Content in (10<sup>-9</sup> J.m<sup>-2</sup>): Delta_OHC_idx_IPSL-EHS_1940-2018.nc The difference between the Northern and the Southern Hemisphere anomalies of near-surface air temperature (K): DITA_yr_IPSL-EHS_1900-2018.nc The netcdf files provided the time series described above for each of the 32 members of the IPSL ensemble ranked from the member 1 to the member 32. Note that the member 2 is not available over the 2030-2059 period. The AMOC and GSAT files covering the 1850-2059 period are therefore composed of 31 members instead of 32, with the second member corresponding to member 3 and so on. A description of the AMOC fingerprints can be found in the associated publication. <br>
DOI: 10.5281/zenodo.5159425
title: Increased risk of near term global warming due to a recent AMOC weakening

description: This archive contains data from the IPSL-CM6A-LR ensemble of extended historical simulations dataset used in the main Figure of the publication: Bonnet et al., 2021, Nature Communication, "Increased risk of near term global warming due to a recent AMOC weakening". Corresponding authors: Rémy Bonnet, rbonnet@ipsl.fr Description of the archive: - Atlantic Meridional Overturning Circulation (AMOC in Sv) time series calculated as the maximum of the Atlantic meridional stream function at 20°N-50°N (AMOC_IPSL-EHS_1850-2059.nc and AMOC_yr_IPSL-EHS_1900-2018.nc) - Global near-Surface Air Temperature (GSAT in K) time series (GSAT_IPSL-EHS_1850-2059.nc and GSAT_yr_IPSL-EHS_1900-2018.nc) - Time series of the four AMOC fingerprints used: Sea Surface Temperature over the North Atlantic Subpolar Gyre (K): SST_SPG_NAtl_relative_GlobalSST_IPSL-EHS_1900-2018.nc The Atlantic Multidecadal Variability index (K): AMV_idx_historical_IPSL-CM6A-LR_1900-2018.nc A new index based on the (0-700 m) Ocean Heat Content in (10<sup>-9</sup> J.m<sup>-2</sup>): Delta_OHC_idx_IPSL-EHS_1940-2018.nc The difference between the Northern and the Southern Hemisphere anomalies of near-surface air temperature (K): DITA_yr_IPSL-EHS_1900-2018.nc The netcdf files provided the time series described above for each of the 32 members of the IPSL ensemble ranked from the member 1 to the member 32. Note that the member 2 is not available over the 2030-2059 period. The AMOC and GSAT files covering the 1850-2059 period are therefore composed of 31 members instead of 32, with the second member corresponding to member 3 and so on. A description of the AMOC fingerprints can be found in the associated publication. <br>