cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16830709.v1
title: Phenotypic evaluation of chickpea drought tolerance introgression lines at field, Leasyscan and pot culture.

description: Phenotypic evaluation of chickpea drought tolerance introgression lines at field, Leasyscan and pot culture.
DOI: 10.6084/m9.figshare.16864600.v1
title: Supplementary Material – Floristic composition, structure and species-area relationships on a neotropical inselberg in southeastern Brazil

description: <b>Table S1 – </b>Composition, life forms, distribution in the patches size classes and structural parameters obtained for the species sampled in lithophytes vegetation patches from the Morro do Itaoca inselberg, Campos dos Goytacazes, RJ, ranked according to importance value index (IV).<b>Table S2 – </b>Structural parameters obtained for the 20 species of highest general importance value, sampled in three patch size classes from the Morro do Itaoca inselberg, Campos dos Goytacazes, RJ.<b>Table S3 – </b>Studies conducted on vegetation patches of rocky outcrops in Brazil, showing the phytogeographic domain (<i>sensu</i> Flora Brasil 2020), geology, total area sampled (m²), species richness and number of species per square meter<br>see Original Paper: http://dx.doi.org/10.1590/2175-7860202172114
DOI: 10.6084/m9.figshare.21978875.v1
title: Giayetto et al, 2023 - Ecological and life-history traits and their relationship with West Nile virus and Saint Louis Encephalitis virus exposure risk.

description: Code and data to accompany: Giayetto <em>et al</em>., 2023 - Ecological and life-history traits and their relationship with West Nile virus and Saint Louis Encephalitis virus exposure risk. We combined a dataset of ecological and life-history traits that were potentially relevant to explain West Nile virus (WNV) and Saint Louis Encephalitis virus (SLEV) birds’ exposure risk. We selected the following six traits: body mass, clutch size, nest height, nest type, diet type and migratory status, and we combined it with data obtained in the field on the serological status of 3502 birds against the aforementioned viruses. We used the serological state against WNV and SLEV (presence/absence of neutralizing antibodies) data from free-ranging birds, obtained between 2004 and 2019 in 5 different Argentinean provinces and compiled the traits of the 130 represented species in our dataset of de sampled free-ranging birds. Both, body mass and clutch size data were mainly complied from Cooke et al 2019, that includes these following databases: PanTHERIA (Jones <em>et al</em>., 2009), Pacifici database (Pacifici <em>et al</em>., 2013), EltonTraits database (Wilman <em>et al</em>., 2014) and Amniote database (Myhrvold <em>et al</em>., 2015). We supplemented missing species traits using data from Aráoz et al 2016. Information referring to nest characteristics, diet and migratory status was extracted mainly from The Cornell Lab of Ornithology website (https://birdsoftheworld.org). Nest height was classified in three categories, as ground, understory (nests predominantly found above ground and below 3m) or canopy/sub-canopy (nests predominantly found above 3m). Nest type was classified in three categories, as open cup, closed cup or cavity. Diet type was categorized into 7 groups according to the primary diet of each species: Folivore-Frugivore, Frugivore-Insectivore, Granivore, Granivore-Insectivore, Insectivore, Insectivore-Carnivore and Omnivore. Migratory status was categorized as resident or migrant. <br> # FILESET <br> <em>nmds-traits.csv</em> - Dataframe for NMDS analysis according birds seroprevalence and their ecological and life history traits. <br> <em>nmds.R - </em>Scripts for the visualization of birds’ species according their seroprevalence and their ecological and life history traits via NMDS <br> <em>Graf_WNV_SLEV_CoefData.R</em> - Codes for plotting model-averaged parameter estimates and their CIs. <br> <em>database.csv</em> - Compiled trait data and serological state of Argentinean birds against WNV and SLEV. Imputed data of Argentinean birds tested for WNV and SLEV neutralizing antibodies and their compiled traits by specie (body mass, clutch size, migratory status, diet type, nest type, nest, height). <br> <em>WN-traits.R - </em>Codes for WNV model averaging analysis <em>SLE-traits.R</em><strong> -</strong> Codes for SLEV model averaging analysis <br>
DOI: 10.17632/4pzwr94n35
title: T_iridipennis_Aggression_Homing

description: Contains data and codes used in the manuscript "The Indian stingless bee, Tetragonula iridipennis, uses multimodal cues for efficient homing"
DOI: 10.17632/vfc27yprpp
title: Electrochemical degradation of tebuthiuron pesticide using a flow reactor: Insights into the co-generation of oxidants and ecotoxicological risks
DOI: 10.6084/m9.figshare.25151645.v1
title: Drosophila_yakuba_mayottensis_assembly

description: Genome assembly of the noni specialist subspecies Drosophila yakuba mayottensis and synteny analysis in comparison to the Drosophila yakuba reference genome v.1.05.
DOI: 10.6084/m9.figshare.28707146.v1
title: Virtual H&E Staining Dataset

description: Virtual H&E Staining Dataset used in the paper: Preserving Spatial and Quantitative Information in Unpaired Biomedical Image-to-Image Translation
DOI: 10.6084/m9.figshare.8196608.v1
title: MOESM1 of A proposed correction in the weighted method to score the Ishihara test

description: Additional file 1. Binary results of Ishihara test. Three spreadsheets containing the binary results of Ishihara plates for normal trichromats (spreadsheet #1), protan subjects (spreadsheet #2), and deutan (spreadsheet #1). Value 1 means correct response, value 0 means incorrect response.
DOI: 10.17632/7zc56ttd96
title: Lung Adenocarcinoma Evolution H&E Pathomic Feature Analysis Dataset

description: We curated three distinct cohorts (Japan, China, and the USA) covering 98 patients, 162 slides, and 669 regions of interest (ROI), including 143 Normal, 129 AAH, 94 AIS, 98 MIA, and 205 ADC. We employed state-of-the-art artificial intelligence (AI) techniques to robustly segment and recognize cells on routinely used H&E histopathology images and extracted nine biology-relevant pathomic features to decode lung preneoplasia evolution.
DOI: 10.6084/m9.figshare.13275038.v1
title: Oxforshire E. coli bloodstream infection isolates

description: MLST output from 3479 invasive E. coli isolates from Oxfordshire to support the paper Ten years of population-level genomic Escherichia coli and Klebsiella pneumoniae serotype surveillance informs vaccine development for invasive infections https://doi.org/10.1101/2020.07.08.20140707
DOI: 10.6084/m9.figshare.25683894.v2
title: Data for Parrella et al., Impact of heteroaggregation between microplastics and algae on particle vertical transport. Nature Water (2024)

description: The dataset complements the work of Parrella et al. entitled "Impact of heteroaggregation between microplastics and algae on particle vertical transport", published in Nature Water. The data generated to create the main plots and the Figures are available as an .xlsx file, where each sheet corresponds to a specific Figure in the main text and the supplementary material.The full manuscript can be found, open access, at: https://doi.org/10.1038/s44221-024-00248-z<br>
DOI: 10.15468/dl.qw24z2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagamichthys schnakenbecki (Krefft, 1953)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((6.1346 -1.4131,6.0095 -1.0885,5.5445 -0.9058,5.2269 -1.0828,5.1089 -1.4368,5.2587 -1.812,5.5948 -1.957,6.0445 -1.7393,6.1346 -1.4131))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013106-250525065834625/datasets/export for details.
DOI: 10.17632/9745v8tj9h
title: Data for "Asymmetric Nest Architecture is not random and highly repeatable in an avia nest"

description: Here we provide the entire data set for the nests reported via the smartphone application HORNERO.

The data contains information on:
The nest asymmetry (Column H);
The date of collection (Column  B);
The nest site properties (columns J,K,L,M);
Latitude (Column C) and Longitude (Column D) of each nest;
UserID label (Column R)
DOI: 10.17632/yv4fzv6cnm
title: A single-cell atlas of chromatin accessibility in the human genome. Zhang et al.

description: This dataset contains the numerical data used to generate the Figures in the paper titled "A single-cell atlas of chromatin accessibility in the human genome".
DOI: 10.6084/m9.figshare.19641774.v1
title: RAW DATA .tiff (TIFF Files)

description: This dataset is a raw data in TIFF (.tiff) files, that used in our study.
DOI: 10.6084/m9.figshare.28071389.v1
title: Wastewater dataset on the SARS-CoV-2 sublineages circulating in Central Arkansas, USA, post-COVID-19 pandemic

description: Data File 1. NCBI Sequence Read Archive accession numbers and metadata of wastewater samples collected in four wastewater treatment facilities in Central Arkansas, USA (Little Rock’s Adams Field, Fourche Creek, and Little Maumelle and Pine Bluff) between 08 February 2022 and 16 April 2024.Data File 2. Mean Ct values of SARS-CoV-2 genes (Orf1ab, S-protein, and N-protein) and endogenous control (PMMoV) in wastewater samples collected in four wastewater treatment facilities in Central Arkansas, USA (Little Rock’s Adams Field, Fourche Creek, and Little Maumelle and Pine Bluff) between 08 February 2022 and 16 April 2024. Undetermined values were Ct &gt; 40.Data File 3. Lineage analysis of SARS-CoV-2 and consensus sequences (FASTA format) detected through RNA sequencing in wastewater samples collected in four wastewater treatment facilities in Central Arkansas, USA (Little Rock’s Adams Field, Fourche Creek, and Little Maumelle and Pine Bluff) between 08 February 2022 and 19 March 2024. The data were generated using Illumina DRAGEN COVID Lineage software, and the most abundant variants detected in each sample are shown. This software aligns SARS-CoV-2 sequence reads to a reference genome to generate a consensus genome sequence and identify mutations, including amino acid substitutions and deletions. It then performs lineage/clade classification using Pangolin and/or NextClade. <sup>a</sup>World Health Organization’s terminology used to classify SARS-CoV-2 variants. <sup>b</sup>Percentage of base calls in the consensus SARS-CoV-2 sequence that are not ambiguous, i.e., the software could confidently assign a specific nucleotide (A, T, C, or G).Data File 4. Relative abundance of SARS-CoV-2 lineages based on amino acid changes in wastewater samples in Central Arkansas (Little Rock’s Adams Field, Fourche Creek, and Little Maumelle and Pine Bluff) from 02 November 2021 to 19 March 2024. The data was obtained by using the bioinformatic package Freyja (https://github.com/andersen-lab/Freyja)<sup>13</sup>.
DOI: 10.6084/m9.figshare.7865015.v2
title: Microbial and Metabolic Succession on Common Building Materials Under High Humidity Conditions

description: Rarefied OTU tables for the 16S and ITS datasets, and the metabolomics data table. The mapping file contains metadata for each sample. Sample IDs in the metabolomics table use a different naming convention, and can be linked to the mapping file via the NameConversion file.
DOI: 10.17632/r3z6vp396m
title: Chinese medicinal blossom-dataset

description: The blossom images of traditional Chinese medicinal herbs were captured by Google search. The images were divided into twelve categories: (1) Syringa, (2) Bombax malabarica, (3) Michelia alba, (4) Armeniaca mume, (5) Albizia julibrissin, (6) Pinus massoniana, (7) Eriobotrya japonica, (8) Styphnolobium japonicum, (9) Prunus persica, (10) Firmiana simplex, (11) Ficus religiosa and (12) Areca catechu. The number of original images is 1716, and the total number of images acquired after data augmentation was 12538. The dataset provide a collection of blossom images on traditional Chinese herbs help Chinese pharmacist to classify the categories of Chinese herbs. In addition, the dataset can serve as a resource for researchers who use different algorithms of machine learning or deep learning for image segmentation and image classification.
DOI: 10.17632/wff3kn8zxc
title: Amplicon data from marine post-smolt 2016-2017

description: Microbial monitoring of marine post-post smolt RAS by 16S amplicon analysis

Samples from biofilter biofilm, production water, tank wall and fish skin. 
Sampling time notation C for cycle and W for week in cycle

Appendix:  data sorted by relative abundance and origin of taxa
DOI: 10.17632/wg99dt6d9k
title: settlement of the embankment

description: The database includes 500 analysis results of settlement of the embankment in different designs: the embankment height, the peat thickness, the CMC spacing, and the CMC diameter.
DOI: 10.6084/m9.figshare.15035733.v1
title: Data Stainless Steel 316L (1).csv

description: Raw data of melt pool measurements of SS316L for the manuscript 'Methodology and experimental Validation of analytical Melt Pool Models for Laser Powder Bed Fusion'
DOI: 10.17632/wd8mp6t629
title: Bacterial ligases reveal fundamental principles of polyubiquitin specificity

description: Extended data containing full protein gels. Associated with https://doi.org/10.1016/j.molcel.2023.11.017.
DOI: 10.6084/m9.figshare.22362415.v1
title: S4_Data CXCL11_20 binding and uptake.xlsx

description: CXCL11_20 binding and uptak
DOI: 10.17632/bfgyd7s76x
title: Data for: The Role of 3D Printing in Pediatric Airway Obstruction: A Systematic Review

description: These tables represent a systematic review of 3D printed airway models and implantable interventions for tracheal obstruction.
DOI: 10.6084/m9.figshare.24235087.v1
title: Supplementary Material for: A case of Nocardia africana-related keratitis

description: Nocardia spp. is gram positive, aerobic, weakly acid-fast bacteria. Nocardia spp. keratitis is a rare ocular infection classically described following corneal injury or vegetative and soil exposure. However, keratitis caused by Nocardia africana had never been reported in the literature. We first reported a 70-year-old male who had a traumatic ocular injury to his left eye a month ago. With his complaint of left eye pain, reduced vision, and light sensitivity; the slit-lamp biomicroscopy showed the superficial multi-lobulated epithelial infiltration located at inferior cornea with positive fluorescein stain. Microscopic work up from corneal specimens demonstrated dry and chalky white colonies on blood agar and Lowenstein-Jensen media resembling Nocardia spp. The MALDI-TOF MS analyses using VITEK® MS exhibited Nocardia africana. The corneal lesion was treated with 2% amikacin topical eye drops and responded well. The careful history taking, precise clinical examinations and meticulous microscopic assessment were the cornerstone of diagnosis. Definite diagnosis and timely treatment were essential to prevention of ocular morbidity in Nocardia africana.
DOI: 10.6084/m9.figshare.9765359.v2
title: Name-Location

description: Geographically-explicit network of urban living and working in Shenzhen City, South China<br>
DOI: 10.17632/32xj2sr7cd
title: Data for: Accuracy of transferring analog dental casts to a virtual articulator

description: The datasets describe the accuracy of the virtual dental space (VDS) if the indirect scanning method of the dental casts is used. Analog and virtual matching point pairs are compared during a static occlusal protocol performed in both environments.
DOI: 10.17632/7fj3mddx73
title: Repository of Rainfall-Streamflow Datasets and Models for the Lenguazaque River Basin (Cundinamarca, Colombia)

description: This dataset contains data for modeling output discharge as a function of input precipitation in the Lenguazaque River Basin, a headwater catchment in Cundinamarca, Colombia, South America. The paper where the data, code and results are described in detail is open access and can be found hee: https://doi.org/10.1016/j.ejrh.2022.101243 The title is Modeling streamflow in headwater catchments: A data-based mechanistic grounded framework, by Fernandez, Camacho and Nejadhashemi (2022) The dataset is organized in several folders, described as follows: 1RawData: Time series of input precipitation and output streamflow in daily and sub-daily resolutions 2ProcessedData: The same time series after management of outliers and missing data 3ModelResults: Repository of code to work with these datasets 4Code: V2 includes a more detailed version of the codes used in the paper, separated by each individual Stage NOTE: Raw data was provided by the Environmental Agency CAR. Daily data was provided upon request in digital format. Most sub-daily records were available as hardcopy paper charts which were photographed and digitized.
DOI: 10.17632/jyf6xdprsr
title: Data for: A CROSS-CULTURAL ANALYSIS OF HOW INDIVIDUALISM AND COLLECTIVISM IMPACT COLLABORATIVE CONSUMPTION
DOI: 10.6084/m9.figshare.12482450.v1
title: Supplementary Material for: Acute Lengthening of Progenitor Mitosis Influences Progeny Fate during Cortical Development<b><i> in vivo</i></b>

description: <b><i>Background/Aims:</i></b> Prenatal microcephaly is posited to arise from aberrant mitosis of neural progenitors, which disrupts both neuronal production and survival. Although microcephaly has both a genetic and environmental etiology, the mechanisms by which dysregulation of mitosis causes microcephaly are poorly understood. We previously discovered that prolonged mitosis of mouse neural progenitors, either <i>ex vivo</i> or <i>in vitro</i>, directly alters progeny cell fate, ­resulting in precocious differentiation and apoptosis. This raises questions as to whether prolonged progenitor mitosis affects cell fate and neurogenesis <i>in vivo</i>, and what are the underlying mechanisms? <b><i>Methods/Results:</i></b> Towards addressing these knowledge gaps, we developed an <i>in vivo</i> model of mitotic delay. This uses pharmacological inhibition to acutely and reversibly prolong mitosis during cortical development, and fluorescent dyes to label direct progeny. Using this model, we discovered that a causal relationship between mitotic delay of neural progenitors and altered progeny cell fate is evident <i>in vivo</i>. Using transcriptome analyses to investigate the state of delayed cells and their progeny, we uncovered potential molecular mechanisms by which prolonged mitosis induces altered cell fates, including DNA damage and p53 signaling. We then extended our studies to human neural progenitors, demonstrating that lengthened mitosis duration also directly alters neuronal cell fate. <b><i>Conclusions:</i></b> This study establishes a valuable new experimental paradigm towards understanding mechanisms whereby lengthened mitosis duration may explain some cases of microcephaly.
DOI: 10.6084/m9.figshare.5480716.v3
title: Nature Graduate Survey 2017

description: Anonymised raw data and questionnaire from Springer Nature's 2017 Graduate survey
DOI: 10.6084/m9.figshare.19078358.v1
title: Base de datos sobre "Mecanismos de Democracia Directa en América Latina"

description: El Observatorio de Reformas Políticas en América Latina presenta la siguiente base de datos que contiene información sobre mecanismos de democracia directa en América Latina.
DOI: 10.6084/m9.figshare.28062263.v2
title: Flower-wasp interactions in a highly diverse tropical ecosystem

description: Data set consolidating published records of flower-wasp interactions in the Cerrado.
DOI: 10.6084/m9.figshare.2812930.v2
title: Ranking computer program using AHP, WSM, TOPSIS and Rubric

description: Ranking implementation on computer program difficulty features using AHP, TOPSIS, WSM and Rubric's accessment.<br>
DOI: 10.17632/38tn7gkgsh
title: Electrical Resistivity Tomography datasets for landslide detection. A case study in Tghat-Fez (Morocco)

description: The application of the Electrical resistivity tomography (ERT) Method, in conjunction with the BERT python-based inversion approach, leads to the development of a dependable methodology for fault and landslide identification.

The 2D ERT data were collected along nine profiles. The dipole-dipole array configuration was used with electrode spacing of 2 m and an overall length of 96 m, reaching a depth of aproximatly 20 m.
DOI: 10.6084/m9.figshare.26968225.v1
title: Hospital accessibility by Ga2SFCA

description: Ensuring equitable access to health services is crucial for public welfare and social equity, and is a key objective of the United Nations' Sustainable Development Goals (SDGs). However, existing datasets often define hospital accessibility using travel time to hospitals in geographic dimension only, without considering the supply (hospital capacity) and demand (population distribution) dynamics. To overcome this limitation, we developed and validated a national-scale 1 KM map of both hospital travel time and hospital accessibility in China. We used Gaussian two-step floating catchment area (Ga2SFCA) model to calculate hospital accessibility, incorporating hospital capacity and service population. Various file types and statistical indicators are provided, making the dataset highly accessible for non-specialists. The dataset fills the gap in publicly available nationwide hospital accessibility data for China and can serve as a critical tool in optimizing resource allocation and developing targeted strategies to improve healthcare equity.In this version, the maximum scanning radius for primary, secondary, and tertiary hospitals was set to 30 minutes, 45 minutes, and 60 minutes, respectively.
DOI: 10.6084/m9.figshare.29094704.v1
title: EPD data

description: <b>Hong Kong EPD Marine Water Quality Data</b>
DOI: 10.17632/jbjh3gmknw
title: Using serum metabolomics to predict development of anti-drug antibodies in multiple sclerosis patients treated with IFNβ

description: Hypothesis: Serum metabolomics can be used to predict immunogenicity against IFNβ in multiple sclerosis patients A prospective cohort of multiple sclerosis (MS) patients was recruited across six European countries as part of the Anti-Biopharmaceutical Immunization: prediction and analysis of clinical relevance to minimize the RISK consortium (ABIRISK consortium; www.abirisk.eu/). Serum samples were collected from MS patients prior to IFNβ treatment (M0), and after 3 (M3) and 12 (M12) months to be used for anti-drug antibody detection (ADA) and metabolomic analysis. 228 serum metabolites and lipids were quantified using an established nuclear magnetic resonance spectroscopy platform (Nightingale Health). The dataset includes absolute concentrations (mmol), and relative measures (ratios, percentages) from 82 MS patients (M0 and M12). 9 were missing at M3, leaving n=73 at this time-point. Serum was tested for both binding (bAbs) and neutralizing (nAbs) ADA, measured with an enzyme-linked immunosorbent assay (ELISA) (Ingenhoven et al., 2017) and cell-based luciferase reporter gene assay (Hermanrud et al., 2016), respectively. Patients were classified as ADA positive if they were positive for bAbs, or had a nAbs titer &gt;320 U/mL within 12 months of starting treatment. Patients were considered ADA negative if they were negative for both assays. Patients with missing data or negative for bAbs and with a nAbs titer &lt;320 U/mL were excluded.