cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20401047.v4
title: Exploring the Relation Between Spatial Abilities and STEM Expertise

description: The csv file contains all participants' scores in each spatial thinking factor. <br> The R script contains the necessary workflow for reproducing the results reported in the paper. <br> All statistical analyses have been performed in R (R Core Team, 2021), using: “tidyverse” (Wickham et al., 2019), “DescTools “(Andri et al., 2022), “gdata (Warnes et al., 2022), “ggstatsplot” (Patil, 2021), “corrplot” (Wei & Simko, 2021), “pcal” (Fonseca & Paulo, 2020) and “effectsize” (Ben-Shachar et al., 2020) packages. Andri S. et mult. al. (2022). DescTools: Tools for Descriptive Statistics. R package version 0.99.45, https://cran.r-project.org/package=DescTools Ben-Shachar, M., Lüdecke, D., & Makowski, D. (2020). effectsize: Estimation of Effect Size Indices and Standardized Parameters. <em>Journal of Open Source Software</em>, 5(56), 2815. https://doi.org/10.21105/joss.02815 Fonseca, P. & Paulo, R. (2020). pcal: Calibration of P-values for Point Null Hypothesis Testing, R package version 1.1.0. https://pedro-teles-fonseca.github.io/pcal/ Patil, I. (2021). Visualizations with statistical details: The 'ggstatsplot' approach. <em>Journal of Open Source Software</em>, 6(61), 3167. https://doi.org/10.21105/joss.03167 R Core Team: R (2021). <em>A language and environment for statistical computing</em>. R Foundation for Statistical Computing, https://www.R-project.org Warnes, G. R. et mult. Al (2022). ‘gdata’: Various R Programming Tools for Data Manipulation Version 2.18.0.1, https://CRAN.R-project.org/package=gdata Wei, T., Simko, V. (2021). R package 'corrplot': Visualization of a Correlation Matrix. (Version 0.92), https://github.com/taiyun/corrplot Wickham, H., Averick, M., Bryan, J., Chang, W., McGowan, L.D., François, R., Grolemund, G., Hayes, A., Henry, L., Hester, J., Kuhn, M., Pedersen, T.L., Miller, E., Bache, S.M., Müller, K., Ooms, J., Robinson, D., Seidel, D.P., Spinu, V., Takahashi, K., Vaughan, D., Wilke, C., Woo, K., Yutani, H. (2019). Welcome to the tidyverse, <em>Journal of Open Source Software</em>, 4(43), 1686. https://doi.org/10.21105/joss.01686.
DOI: 10.6084/m9.figshare.26394847.v2
title: F1000 ML and DL Data

description: AI for prediction of Spine disease
DOI: 10.6084/m9.figshare.6455855.v2
title: Analysis of Dynamic Characteristics of Grease Lubricated Tapered Roller Bearings

description: <b>Analysis of Dynamic Characteristics of Grease Lubricated Tapered Roller Bearings</b>
DOI: 10.17632/sjxkn582yt
title: Petrogenesis of Late Miocene high Ba-Sr rocks in eastern Pamir, Northwest Tibet: Insights into lithospheric mantle evolution and geodynamic processes during India-Asia bidirectional subduction

description: Zircon U–Pb and Hf–O isotope ratios, whole-rock and mineral geochemical compositions and Sr-Nd-Pb isotopic data from the eastern Pamir, Northwest Tibet
DOI: 10.17632/sz2h3trtk2
title: Data for: A Mass Spectrometry and Principle Component Analysis on the Effect of Auxiliary Energy to the Terpenes Extraction from Andrographis Paniculata
DOI: 10.17632/tbrnp6vrnj
title: Dataset of Leak Simulations in Experimental Testbed Water Distribution System

description: This is the first fully labeled open dataset for leak detection and localization in water distribution systems. This dataset includes two hundred and eighty signals acquired from a laboratory-scale water distribution testbed with four types of induced leaks and no-leak. The testbed was 47 m long built from 152.4 mm diameter PVC pipes. Two accelerometers (A1 and A2), two hydrophones (H1 and H2), and two dynamic pressure sensors (P1 and P2) were deployed to measure acceleration, acoustic, and dynamic pressure data. The data were recorded through controlled experiments where the following were changed: network architecture, leak type, background flow condition, background noise condition, and sensor types and locations. Each signal was recorded for 30 seconds. Network architectures were looped (LO) and branched (BR). Leak types were Longitudinal Crack (LC), Circumferential Crack (CC), Gasket Leak (GL), Orifice Leak (OL), and No-leak (NL). Background flow conditions included 0 L/s (ND), 0.18 L/s, 0.47 L/s, and Transient (background flow rate abruptly changed from 0.47 L/s to 0 L/s at the second 20th of 30-second long measurements). Background noise conditions, with noise (N) and without noise (NN), determined whether a background noise was present during acoustic data measurements. Accelerometer and dynamic pressure data are in ‘.csv’ format, and the hydrophone data are in ‘.raw’ format with 8000 Hz frequency. The file “Python code to convert raw acoustic data to pandas DataFrame.py” converts the raw hydrophone data to DataFrame in Python.
DOI: 10.6084/m9.figshare.16799824.v2
title: A novel circular RNA circ_HN1/miR-628-5p/Ecto-5’-nucleotidase competing endogenous RNA network regulates gastric cancer development

description: The competing endogenous RNA (ceRNA) activity of circular RNAs (circRNAs) has been implicated in the development of gastric cancer. Here, we sought to explore the ceRNA function of circRNA Jupiter microtubule associated homolog 1 (circ_HN1) in gastric tumorigenesis. Circ_HN1, microRNA (miR)-628-5p, and NT5E expression levels were quantified by qRT-PCR and western blot. Dual-luciferase reporter assays were used to assess the direct relationship between miR-628-5p and circ_HN1 or NT5E. Our data showed that circ_HN1 expression was enhanced in human gastric cancer. Depletion of circ_HN1 impeded cell proliferation, spheroid formation, invasion, and migration and promoted apoptosis <i>in vitro</i>, as well as diminished tumor growth <i>in vivo</i>. NT5E was a downstream effector of circ_HN1 function. NT5E was targeted and inhibited by miR-628-5p through the perfect complementary site in NT5E 3ʹUTR, and circ_HN1 affected NT5E expression through miR-628-5p competition. Moreover, depletion of miR-628-5p reversed the effects of circ_HN1 silencing on regulating cell functional behaviors. Our findings identify a novel ceRNA network, the circ_HN1/miR-628-5p/NT5E axis, for the oncogenic activity of circ_HN1 in gastric cancer, highlighting circ_HN1 inhibition as a promising targeted treatment against gastric cancer.
DOI: 10.6084/m9.figshare.9901262.v1
title: Comparison of Two Posterior Soft Tissue Repair Techniques to Prevent Dislocation after Total Hip Arthroplasty via the Posterolateral Approach

description: Although the posterolateral approach is considered to carry a higher early dislocation rate after total hip arthroplasty, posterior soft tissue repair techniques make up for this limitation. Through-bone and through-tendon repair techniques are the two most commonly used techniques. This study aimed to comprehensively compare these techniques and give more evidence-based references for orthopedists. <i>Methods:</i> This retrospective study enrolled 87 patients who underwent posterior soft tissue repair with total hip arthroplasty via the posterolateral approach. The posterior capsular and external rotators were reconstructed to the greater trochanter through drill holes (through-bone, <i>n</i> = 46) or gluteus medius tendon (through-tendon, <i>n</i> = 41). Early dislocation rate, repair-related complications, postoperative pain (visual analog scale, VAS), hip joint function (Harris Hip Scale, HHS), patient satisfaction, and operation-related indexes were evaluated. <i>Results:</i> The discrepancy in early dislocation between the two cohorts was not statistically significant. Operation-related indexes were not significantly different between the two cohorts, except for the postoperative drainage volume (229.46 mL vs. 172.07 mL, <i>p</i>=.013). No patient sustained greater trochanteric fracture and sciatic nerve injury. Each group achieved significant improvements in HHS and VAS scores compared with preoperative values. No statistically significant discrepancy was found in HHS scores between the two groups at the same period, while VAS scores were significantly lower in the through-bone group at 1 week (4.93 vs. 5.68, <i>p</i>=.026) and 1 month (1.72 vs. 1.99, <i>p</i>=.038) after surgery. Higher patient satisfaction was observed in the through-bone group. <i>Conclusions:</i> Although no statistical discrepancy in the early dislocation rate between through-bone and through-tendon repair techniques was observed, lower pain scores and higher patient satisfaction supported the former. We recommend that through-bone repair technique should be chosen first by orthopedists when performing reconstruction of the posterior soft tissue in total hip arthroplasty via a posterolateral approach.
DOI: 10.6084/m9.figshare.22259449.v2
title: Supplemental Table 6: Human Orthologs of Moderate CH Goat DEG

description: Goat genes were converted to human orthologs via g:Orth function within gProfiler2 R package (Raudvere et al., 2019)
DOI: 10.6084/m9.figshare.27001018.v1
title: Long-term effects of soil warming on soil respiration in subtropical and temperate forests

description: we experimentally warmed the surface soil of a subtropical (ST) and a warm temperate forest (WT) by ~ 1.5°C from 2012 to 2022 and compared the differences in SR, chemical stability of SOM, and microbial community composition between the two sites. Soil warming did not affect SR in the short term (2-3 years), but decreased it in the longer term (10 years) (-10.3%) at ST. Soil warming altered the chemical composition of SOM towards increased aliphaticity and decreased O-alkyl C content probably due to the elevated microbial K-strategist taxa at ST. At WT, soil warming significantly stimulated SR by 35.3% in the short term and by 29.8% in the longer term, mainly resulting from the enhanced decomposability of SOM (CC/MC) due to the substantial increase in fine root C input.
DOI: 10.6084/m9.figshare.13335371.v1
title: Percent cover in classified UAV imagery - raw data

description: This dataset was used to evaluate the utility of unoccupied aerial vehicles (UAV) for monitoring tidal marsh restoration at a site in Elkhorn Slough, on the Central Coast of California, USA. We evaluated the accuracy of UAV imagery for calculating vegetation cover in 24 plots measuring approximately 1 m<sup>2</sup>. UAV percent cover estimates were calculated from four different classified orthomosaics using pixel-based classification with a maximum likelihood classifier. One orthomosaic was collected at each of three flight altitudes (10, 30, and 60 m) and included only visible spectrum (red, green, and blue; RGB) data, while an additional orthomosaic collected at 30 m altitude also included near infrared (NIR) data. Columns 3-10 reflect the area belonging to different classes in each plot, while column 11 is the total area in each plot. Vegetated cover is the sum of <i>Spergularia marina</i> and <i>Salicornia pacifica</i> (pickleweed) cover.
DOI: 10.6084/m9.figshare.28869278.v1
title: Supplementary Material for: Patient and caregiver perspectives on the design and execution of ACT-GLOBAL, a stroke adaptive platform trial: a focus group study

description: Introduction: Adaptive platform trials represent a paradigm shift in stroke research. We examined how patient-partners perceived the design and execution of an international platform trial in acute stroke, ACT-GLOBAL (A multi-faCtorial, mulTi-arm, multi-staGe, randomised, gLOBal Adaptive pLatform trial for stroke), through a series of focus groups with process evaluation methodology. 
Methods: Participants were recruited from two comprehensive stroke centers one in Calgary, Canada and one in Sydney, Australia. Four virtual focus groups were attended by a total of 21 patient-partners and 11 clinician-researchers. One focus group had repeat attendees to review a draft consent form and patient information sheet, and one presented a video describing platform trials. Physician facilitators presented the platform trial concept followed by a facilitated discussion. Audio recordings were transcribed and combined with field notes. Exemplar quotes and themes were identified separately for each group and subsequently across groups. 
Results: Patients/caregivers perceived acute stroke-focussed adaptive platform trials such as ACT-GLOBAL as providing potentially beneficial opportunities to be randomized to multiple treatments, with efficiencies and richer data to improve patient care. Emphasis was given to the importance of gatekeeper processes for the addition of future questions posed by the platform to ensure examined questions would not interfere with routine care, and that safety decisions were ultimately made by non-conflicted parties. They appreciated that deferral of consent would be ideal to allow timely randomization/treatment within the adaptive stroke platform, and for patient safety to be prioritized in enrolment-related decisions with family input whenever feasible. The need to have trial information accessible in digestible chunks, multiple languages, and modalities, was emphasized. To facilitate engagement, transparency, trust, and two-way communication was deemed critical to the informed consent process. 
Conclusion: Patient-partners were supportive of an adaptive platform trial design. However, they expressed important priorities in their execution whilst safeguarding patient autonomy and safety. Oversight, multiple modes of delivering patient information, and having feedback evaluation and transparency with ongoing participation were identified as valued components. Deferral of consent was recognized as a pragmatic way to enrol patients. Similar considerations may apply to adaptive platform trials in other neurological/medical emergencies.
DOI: 10.6084/m9.figshare.3527768.v1
title: Appendix A. Soil and site characteristics for all samples included in the cross-site study.

description: Soil and site characteristics for all samples included in the cross-site study.
DOI: 10.17632/vng8wg9n65
title: Android permissions and API calls during dynamic analysis

description: This data set contain 50,000 android apps and 10,000 malware apps collected from different sources and same name apps download from third party app store.
DOI: 10.6084/m9.figshare.12941639.v1
title: Data for "Impact of the reference list features on the number of citations"

description: The database (tab-delimited file) and R script to generate the analysis in the study:<br>Mammola, S., Martinez, A., Fontaneto, D., & Chichorro, F. (2020). Scientometric correlates of high-quality reference lists in ecological papers. Scientometrics, in press. https://doi.org/10.1007/s11192-020-03759-0 <br>Note that the database was constructed based on a raw database downloaded from Web of Science (see main text for details).
DOI: 10.6084/m9.figshare.22355065.v1
title: Assembly of functional diversity in an oceanic island flora. S3

description: Oceanic island floras are well-known for their morphological peculiarities and exhibit striking examples of trait evolution. These morphological shifts are commonly attributed to insularity and are thought to be shaped by the biogeographical processes and evolutionary histories of oceanic islands. However, the mechanisms through which biogeography and evolution have shaped the distribution and diversity of plant functional traits remain unclear. Here, we describe the functional trait space of the native flora of an oceanic island (Tenerife, Canary Islands, Spain) using extensive field and laboratory measurements, and relate it to global trade-offs in ecological strategies. We find that the island trait space exhibits a remarkable functional richness but that most plants are concentrated around a functional hotspot dominated by shrubs with a conservative life-history strategy. By dividing the island flora into species groups associated with distinct biogeographical distributions and diversification histories, our results also suggest that colonisation via long-distance dispersal and the interplay between inter-island dispersal and archipelago-level speciation processes drive functional divergence and trait space expansion. Contrary to our expectations, speciation via cladogenesis has led to functional convergence, and therefore only contributes marginally to functional diversity by densely packing trait space around shrubs. By combining biogeography, ecology, and evolution our approach opens new avenues for trait-based insights into how dispersal, speciation, and persistence shape the assembly of entire native island floras.
DOI: 10.6084/m9.figshare.18259061.v1
title: Realizing topological edge states with Rydberg-atom synthetic dimensions: Codes

description: Contains code used for Decoherence model in the paper titled "Realizing topological edge states with Rydberg-atom synthetic dimensions".
DOI: 10.6084/m9.figshare.23607717.v1
title: patient61.rar

description: A Patient with fundus images that taken by Ret-cam.
DOI: 10.6084/m9.figshare.25035818.v1
title: Constraints on mineral-associated and particulate organic carbon response to regenerative management: carbon inputs and saturation deficit

description: This file contains data from:sites in King et al. 2023 Biogeochemistry Letters. A soil matrix capacity index to predict mineral‑associated but not particulate organic carbon across a range of climate and soil pH https://doi.org/10.1007/s10533-023-01066-3U.S. measured sites in King et al. 2024 Soil and Tillage Research. Constraints on mineral-associated and particulate organic carbon response to regenerative management: carbon inputs and saturation deficitPlease refer to these papers for details on sites, treatments, soil assays and calculations.<br>
DOI: 10.6084/m9.figshare.9164510.v3
title: DeepMoney: Counterfeit Money Detection Using Generative Adversarial Networks

description: Conventional paper currency and modern electronic currency are two important modes of transactions. In several parts of the world, conventional methodology has clear precedence over its electronic counterpart. However, the identification of forged currency paper notes is now becoming an increasingly crucial problem because of the new and improved tactics employed by counterfeiters. In this paper, a machine assisted system – dubbed DeepMoney– is proposed which has been developed to discriminate fake notes from genuine ones. For this purpose, state-of-the-art models of machine learning called Generative Adversarial Networks (GANs) are employed. GANs use an unsupervised learning to train a model that can then be used to perform supervised predictions. This flexibility provides the best of both worlds by allowing unlabelled data to be trained on whilst still making concrete predictions. This technique was applied to Pakistani banknotes. State-of-the-art image processing and feature recognition techniques were used to design the overall approach of a valid input. Augmented samples of images were used in the experiments which show that a high-precision machine can be developed to recognize genuine paper money. An accuracy of 80% has been achieved. The code is available as an open source to allow others to reproduce and build upon the efforts already made.<br>
DOI: 10.17632/74s6nw7dk9
title: 04 CA DMV Mileage and Disengagement Reports - Original

description: DMV mileage and disengagement reports for automated vehicle testing collected from the publicly accessible CA DMV site: https://www.dmv.ca.gov/portal/vehicle-industry-services/autonomous-vehicles/

Note that older reports (> 2 years) are archived by the CA DMV. To obtain archived records, send an email to  "AVarchive@dmv.ca.gov". They normally respond within 1 business day.

The reports are organized here in Folders by their reported year.
DOI: 10.17632/c5dxwn6w92
title: Data for: A data-driven coulomb counting method for state of charge calibration and estimation of lithium-ion battery

description: Lithium-ion battery cycling experiment
DOI: 10.17632/k72vc6vxyv
title: Top-down mass spectrometry dataset for histones extracted from mouse brain tissue

description: Raw data and analysis results for mouse brain histones by top-down mass spectrometry. Original publication of the full study is at https://pubs.acs.org/doi/full/10.1021/acs.jproteome.6b00694 Only one representative file is uploaded here.
DOI: 10.17632/mfyddz6n8k
title: Files for "Evidence of Collective Influence in Innate Sensing using Fluidic Force Microscopy"

description: Code, Datasets, and Analysis for "Evidence of Collective Influence in Innate Sensing using Fluidic Force Microscopy" manuscript.
DOI: 10.6084/m9.figshare.12525965.v1
title: Anti-Infection Essential Medicines_Database_21June20.xlsx

description: This database provides information on anti-infection essential medicines approved for use in the USA. It includes information on active ingredients, applicant holders, market status, dosage forms, FDA approval dates, generic versions of the medicines approved and more.Data was extracted from the FDA Orange book, as part of the Breaking Good citizen science project - E$$ENTIAL MEDICINE$. https://www.breakinggoodproject.com/essentialmedicines
DOI: 10.6084/m9.figshare.16556664.v1
title: patent_sequence.tsv

description: Nanobodies from patents
DOI: 10.6084/m9.figshare.22574101.v1
title: Crop_AgroVars_rawdata_Rwanda_2014-2020.csv

description: Crop production, area harvested and yield data for Rwanda from 2014-2020 downlaoded from FAOstat.org in Feburay 2023.
DOI: 10.6084/m9.figshare.27987548.v1
title: DLPFC slices and reference scRNA-seq data

description: DLPFC datasets including both spatial transcriptomics data and scRNA-seq data
DOI: 10.17632/x9z6mrg554
title: Experimental data on maximum swelling pressure of clayey soils and Related Soil Properties

description: The swelling pressure of clayey soil is a phenomenon that influences the stability and performance of structures built on it. This phenomenon occurs as the clayey soil undergoes volume changes in response to fluctuations in water content. In the laboratory, experiments have been conducted to determine the maximum swelling pressure of clayey soil as well as its other parameter, aiming to ensure the long-term safety and integrity of structures. This study introduces a dataset featuring maximum swelling pressure values obtained from 759 compacted soil samples. The dataset has been carefully compiled from 16 peer-reviewed articles published between 1994 and 2022. The dataset includes fundamental soil index properties, covering both the physical and chemical aspects, along with the initial and boundary conditions. Considering their significant potential for swelling, the dataset includes information on clay, bentonite, and a mixture of bentonite in both natural and laboratory-engineered states. Different swelling test methods, including zero swelling, swell-consolidation, restrained swell, double-oedometer, free swelling, constant volume oedometer, UPC-isochoric cell, isochoric oedometer, and consolidometer, were employed to measure the maximum swelling pressure of the clayey soils. The dataset serves as a valuable tool for comprehending the intricate interplay between soil properties and swelling behaviour, facilitating further research and contributing to advancements in the fields of soil mechanics and geotechnical engineering.
DOI: 10.6084/m9.figshare.25983166.v1
title: Reinforcement Learning from Static Quality Metrics

description: Data package for paper appearing at DeepTest 2025
DOI: 10.6084/m9.figshare.28007183.v1
title: genome assembly and annotation of Lindera aggregata

description: genome assembly and annotation of Lindera aggregata