cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12736850
title: Genome stability of murine cytomegalovirus vectors with large deletions and insertions

description: We investigated the basic characteristics of a new murine cytomegalovirus (MCMV) vector platform. Using BAC technology, we engineered replication-competent recombinant MCMVs with deletions of up to 26% of the wild type genome. To this end, we targeted five gene blocks (m01-m17, m106-m109, m129-m141, m144-m158, and m159-m170). BACs featuring deletions from 26-18% of the wild type genome exhibited delayed virus reconstitution, while smaller deletions (up to 16%) demonstrated reconstitution kinetics similar to the wild type. Utilizing an innovative methodology, we introduced large genomic DNA segments, up to 35 kbp, along with reporter genes into a newly designed vector with a potential cloning capacity of 46 kbp (Q4). Next, two independent stuffer DNAs were inserted into the Q4 BAC resulting in Q4-LAD and Q4-LRBAs BACs. LAD is an AT-rich DNA sequence based on inactivated human adenovirus genome (34 kbp) and a non-coding portion of human LRBA (LPS responsive beige-like anchor protein) gene a non-coding portion of human LRBA gene which is GC-rich (36 kbp). The Q4-LRBAs BAC was further modified by inserting two different transgene expression cassettes encoding for either Gaussian luciferase (GLuc) resulting in Q4-LRBAs-GLuc. First, we rescued replicating vectors after transfection of MEFs with the above described BACs. Each vector preparation was passaged up to 10 passage on MEFs. Then MEF cells (70% confluence) were infected with Q4, Q4-LAD, and Q4-LRBAs-GLuc at MOI 0.5. derived from passage 1, 5 and 10. As control we used lysates of wild type BAC derived MCMV infected MEFs after passages 1, 5, 10, 15, and 20. After 48 hpi, virus particles were harvested, purified, and DNA was extracted using the NucleoSpin Tissue kit (Macherey-Nagel, Germany). Illumina NGS was performed on 100 ng DNA template for each sample (paired end sequencing, 2×150 bp, 5 Mio reads/sample). This dataset contains the raw sequencing data (individually named .zip files) and a table (an .xlsx file packed into MCMV Vector Stability_VACCINES_2024.zip) with the detailed specifications of the dataset. The reference sequences, which we used for the analysis in our Vaccines paper (Riedl et al. Vaccines, 2024), are provided in a zipped folder in .gb format.
DOI: 10.5281/zenodo.12736851
title: Genome stability of murine cytomegalovirus vectors with large deletions and insertions

description: We investigated the basic characteristics of a new murine cytomegalovirus (MCMV) vector platform. Using BAC technology, we engineered replication-competent recombinant MCMVs with deletions of up to 26% of the wild type genome. To this end, we targeted five gene blocks (m01-m17, m106-m109, m129-m141, m144-m158, and m159-m170). BACs featuring deletions from 26-18% of the wild type genome exhibited delayed virus reconstitution, while smaller deletions (up to 16%) demonstrated reconstitution kinetics similar to the wild type. Utilizing an innovative methodology, we introduced large genomic DNA segments, up to 35 kbp, along with reporter genes into a newly designed vector with a potential cloning capacity of 46 kbp (Q4). Next, two independent stuffer DNAs were inserted into the Q4 BAC resulting in Q4-LAD and Q4-LRBAs BACs. LAD is an AT-rich DNA sequence based on inactivated human adenovirus genome (34 kbp) and a non-coding portion of human LRBA (LPS responsive beige-like anchor protein) gene a non-coding portion of human LRBA gene which is GC-rich (36 kbp). The Q4-LRBAs BAC was further modified by inserting two different transgene expression cassettes encoding for either Gaussian luciferase (GLuc) resulting in Q4-LRBAs-GLuc. First, we rescued replicating vectors after transfection of MEFs with the above described BACs. Each vector preparation was passaged up to 10 passage on MEFs. Then MEF cells (70% confluence) were infected with Q4, Q4-LAD, and Q4-LRBAs-GLuc at MOI 0.5. derived from passage 1, 5 and 10. As control we used lysates of wild type BAC derived MCMV infected MEFs after passages 1, 5, 10, 15, and 20. After 48 hpi, virus particles were harvested, purified, and DNA was extracted using the NucleoSpin Tissue kit (Macherey-Nagel, Germany). Illumina NGS was performed on 100 ng DNA template for each sample (paired end sequencing, 2×150 bp, 5 Mio reads/sample). This dataset contains the raw sequencing data (individually named .zip files) and a table (an .xlsx file packed into MCMV Vector Stability_VACCINES_2024.zip) with the detailed specifications of the dataset. The reference sequences, which we used for the analysis in our Vaccines paper (Riedl et al. Vaccines, 2024), are provided in a zipped folder in .gb format.
DOI: 10.15468/dl.6hcu95
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "TaxonKey is Kinixys homeana Bell, 1827"
 ]
}

 The dataset includes 40 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024839-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2jptjl
title: CCDC 2344670: Experimental Crystal Structure Determination

description: Related Article: Qifeng Guo, Zhitao Lai, Zeng Tian, Ran Tang, Tengbo Ding, Xiaojian Jiang|2024|Org.Lett.|26|5592|doi:10.1021/acs.orglett.4c02057
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jf7hq
title: CCDC 2336423: Experimental Crystal Structure Determination

description: Related Article: Zhanning Liu, Chengyong Xing, Shaowen Wu, Min Ma, Jian Tian|2024|Materials Horizons|11|3345|doi:10.1039/D3MH02185H
description: Related Article: Zhanning Liu|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.26304802
title: SNP-Genotyping.xlsx

description: A study on the correlation between the effect of caffeine citrate in the treatment of apnea of prematurity and polymorphisms of the PER and CRY gene.
DOI: 10.6084/m9.figshare.26304802.v2
title: SNP-Genotyping.xlsx

description: A study on the correlation between the effect of caffeine citrate in the treatment of apnea of prematurity and polymorphisms of the PER and CRY gene.
DOI: 10.6084/m9.figshare.26304802.v1
title: SNP-Genotyping.xlsx

description: 枸橼酸咖啡因治疗早产儿呼吸暂停与PER和CRY基因多态性之间的相关性研究。
DOI: 10.15468/dl.5yec6f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionCode ~TPWD*",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Human Observation, Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Alpheidae, Panopeidae)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024841-240626123714530/datasets/export for details.
DOI: 10.15468/dl.9zadnt
title: Occurrence Download

description: A dataset listing the 153 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is NHMD Invertebrate Zoology Collection",
 "Geometry POLYGON((-7.387285648034448 61.189373493566464,-6.2391835929678745 61.189373493566464,-6.2391835929678745 62.33747554863304,-7.387285648034448 62.33747554863304,-7.387285648034448 61.189373493566464))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 153 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024835-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qybz8s
title: Occurrence Download

description: A dataset listing the 71176 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Marchantiophyta, Bryophyta)"
 ]
}

 The dataset's 71176 records were derived from 2607 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024836-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6va7c
title: Occurrence Download

description: A dataset containing 337472 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apis mellifera Linnaeus, 1758"
 ]
}

 The dataset includes 337472 records from 828 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140271-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5f39v
title: Occurrence Download

description: A dataset containing 3606 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Davilla elliptica A.St.-Hil."
 ]
}

 The dataset includes 3606 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0419801-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.42ztkv
title: Occurrence Download

description: A dataset containing 6391 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anogcodes melanurus (Fabricius, 1787), Anthaxia quadripunctata (Linnaeus, 1758))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 6391 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156215-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kkwnc
title: Occurrence Download

description: A dataset containing 12882563 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year 2019-2019",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12882563 records from 436 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027818-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4arjp
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((108.68774 20.1709,118.46558 20.1709,118.46558 27.92725,108.68774 27.92725,109.70398 23.99414,108.68774 20.1709))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Shinisaurus crocodilurus Ahl, 1930"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0147991-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4xqzb
title: Occurrence Download

description: A dataset containing 5672 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Smicridea McLachlan, 1871",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5672 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000045-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5whab3
title: Occurrence Download

description: A dataset containing 623 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oliva mustelina Lamarck, 1811"
 ]
}

 The dataset includes 623 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094314-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mhpga
title: Occurrence Download

description: A dataset containing 2137 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parkinsonia praecox (Ruiz & Pav.) Hawkins"
 ]
}

 The dataset includes 2137 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0144702-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwsjjw
title: Occurrence Download

description: A dataset containing 2322 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonchocarpus guatemalensis Benth."
 ]
}

 The dataset includes 2322 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0144706-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zceg6
title: Occurrence Download

description: A dataset containing 8772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atocion armeria (L.) Fourr.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8772 records from 369 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057265-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbhfxn
title: Occurrence Download

description: A dataset containing 911 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oliva caerulea (Röding, 1798)"
 ]
}

 The dataset includes 911 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094269-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3qexg
title: Occurrence Download

description: A dataset containing 1472 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paralabrax dewegeri (Metzelaar, 1919)"
 ]
}

 The dataset includes 1472 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057295-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6udg5y
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scarus xanthopleura Bleeker, 1853"
 ]
}

 The dataset includes 126 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057291-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9z2nyr
title: Occurrence Download

description: A dataset containing 636 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ucla xenogrammus Holleman, 1993"
 ]
}

 The dataset includes 636 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057287-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqq3zv
title: Occurrence Download

description: A dataset containing 1720 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ferocactus hamatacanthus (Muehlenpf.) Britton & Rose"
 ]
}

 The dataset includes 1720 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0144708-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93xzuv
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Wiedomys pyrrhorhinos (Wied-Neuwied, 1821)"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083865-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qengmu
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Akrosida Fryxell & Fuertes"
 ]
}

 The dataset includes 32 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030851-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3g976q
title: Occurrence Download

description: A dataset containing 273 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scarus festivus Valenciennes, 1840"
 ]
}

 The dataset includes 273 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057298-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.37ejke
title: Occurrence Download

description: A dataset containing 1052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene chlorantha (Willd.) Ehrh.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1052 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057270-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvcbeu
title: Occurrence Download

description: A dataset containing 1634 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-74.1032840000000022 40.6120665999999986, -74.1032840000000022 40.6129329600000020, -74.1032840000000022 40.6141087299999981, -74.1032840000000022 40.6155939100000012, -74.1032840000000022 40.6165221500000015, -74.1032840000000022 40.6173266300000009, -74.1032840000000022 40.6185023999999970, -74.1032840000000022 40.6199257000000031, -74.1013681999999960 40.6199257000000031, -74.1000085999999953 40.6199257000000031, -74.0988961999999987 40.6199257000000031, -74.0971040000000016 40.6199257000000031, -74.0971040000000016 40.6185023999999970, -74.0971040000000016 40.6175122799999997, -74.0971040000000016 40.6162746199999987, -74.0971040000000016 40.6149750900000015, -74.0971040000000016 40.6138612000000023, -74.0971040000000016 40.6130567200000030, -74.0971040000000016 40.6120665999999986, -74.0987726000000038 40.6120665999999986, -74.0999467999999979 40.6120665999999986, -74.1008120000000048 40.6120665999999986, -74.1022952000000004 40.6120665999999986, -74.1032840000000022 40.6120665999999986))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 1634 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094266-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xe89qc
title: Occurrence Download

description: A dataset containing 1310 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oliva carneola (Gmelin, 1791)"
 ]
}

 The dataset includes 1310 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094273-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94acxc
title: Occurrence Download

description: A dataset containing 2104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oliva miniacea (Röding, 1798)"
 ]
}

 The dataset includes 2104 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094311-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2884e
title: Occurrence Download

description: A dataset containing 4395 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene dichotoma Ehrh.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4395 records from 184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057280-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62875k
title: Occurrence Download

description: A dataset containing 236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Laelia albida Bateman ex Lindl."
 ]
}

 The dataset includes 236 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0144675-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.