cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24174580.v1
title: Functional integration of protein A binding ability to antibody fragments for convenient and tag-free purification

description: Although the development of small therapeutic antibodies is important, the affinity tags used for their purification often result in heterogeneous production and immunogenicity. In this study, we integrated <i>Staphylococcus aureus</i> protein A (SpA) binding ability into antibody fragments for convenient and tag-free purification. SpA affinity chromatography is used as a global standard purification method for conventional antibodies owing to its high binding affinity to the Fc region. SpA also has a binding affinity for some variable heavy domains (VH) classified in the VH3 subfamily. Through mutagenesis based on alignment and structural modeling results using the SpA-VH3 cocrystal structure, we integrated the SpA-binding ability into the anti-CD3 single-chain Fv. Furthermore, we applied this mutagenesis approach to more complicated small bispecific antibodies and successfully purified the antibodies using SpA affinity chromatography. The antibodies retained their biological function after purification. Integration of SpA-binding ability into conventional antibody fragments simplifies the purification and monitoring of the production processes and, thus, is an ideal strategy for accelerating the development of small therapeutic antibodies. Furthermore, because of its immunoactivity, the anti-CD3 variable region with SpA-binding ability is an effective building block for developing engineered cancer therapeutic antibodies without the Fc region.
DOI: 10.34740/kaggle/dsv/7129294
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.24647532.v6
title: criminal-charge-in-taiwan.csv

description: This dataset is used for NLP research and primarily collects criminal judgment cases from Taiwan district courts from January 2020 to April 2022.
DOI: 10.7910/dvn/f6wsst
title: Replication Data for: Learning in European Administrative Networks: a process to all or only to a few?

description: Through the pooling and exchange of resources such as expertise, best practices, and knowledge between network participants, European Administrative Networks (EANs) are expected to play a significant role in enhancing policy learning. Yet, scarce empirical evidence has been presented concerning the learning process taking place within EANs. This paper addresses this gap through the analysis of the Network of the Heads of European Environmental Protection Agencies (EPA Network). Based on a unique survey dataset, social network analysis and exponential random graph models are used to trace the interaction patterns within the network and test which factors shape them. The analysis highlights the relevance of national political factors – i.e. the preferences of national governments and ministries – in shaping the learning processes taking place in the EPA Network. While the network is an important venue for disseminating knowledge between directly and indirectly connected actors, learning processes are mainly limited to like-minded peers.
DOI: 10.34740/kaggle/dsv/7129288
title: 📒 Meta Kaggle ported to MS SQL SERVER 2022 DB
DOI: 10.5281/zenodo.10201544
title: Dataset for the paper "Largest aftershock nucleation driven by afterslip during the 2014 Iquique sequence"

description: Dataset for the following paper 
Yuji Itoh, Anne Socquet, and Mathilde Radiguet, Largest aftershock nucleation driven by afterslip during the 2014 Iquique sequence, Geophysical Research Letters, 2023GL104852
See readme.txt files for details about the files and the contact informaton. Uncompressing produces files with ~ 500 MB in total.
DOI: 10.5281/zenodo.10260396
title: An Interpretable 3D Multi-Hierarchical Molecular Hybrid Representation for Environmental, Health, and Safety Properties Prediction
DOI: 10.5281/zenodo.10260397
title: An Interpretable 3D Multi-Hierarchical Molecular Hybrid Representation for Environmental, Health, and Safety Properties Prediction
DOI: 10.5517/ccdc.csd.cc29b730
title: CCDC 2124991: Experimental Crystal Structure Determination

description: Related Article: Yujie Ma, Wanpeng Lu, Xue Han, Yinlin Chen, Ivan da Silva, Daniel Lee, Alena M. Sheveleva, Zi Wang, Jiangnan Li, Weiyao Li, Mengtian Fan, Shaojun Xu, Floriana Tuna, Eric J. L. McInnes, Yongqiang Cheng, Svemir Rudić, Pascal Manuel, Mark D. Frogley, Anibal J. Ramirez-Cuesta, Martin Schröder, Sihai Yang|2022|J.Am.Chem.Soc.|144|8624|doi:10.1021/jacs.2c00952
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29b752
title: CCDC 2124993: Experimental Crystal Structure Determination

description: Related Article: Yujie Ma, Wanpeng Lu, Xue Han, Yinlin Chen, Ivan da Silva, Daniel Lee, Alena M. Sheveleva, Zi Wang, Jiangnan Li, Weiyao Li, Mengtian Fan, Shaojun Xu, Floriana Tuna, Eric J. L. McInnes, Yongqiang Cheng, Svemir Rudić, Pascal Manuel, Mark D. Frogley, Anibal J. Ramirez-Cuesta, Martin Schröder, Sihai Yang|2022|J.Am.Chem.Soc.|144|8624|doi:10.1021/jacs.2c00952
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25345/c5zc7s52c
title: MassIVE MSV000093570 - Transition metal (W, Mo) stress response strategies of leguminous plants (Glycine max) and their symbiotic partners (B. japonicum)
title: Tungsten (W) and molybdenum (Mo) are economically important transition elements residing in the chromium group of the periodic table. Due to a myriad of industrial applications, ranging from household appliances to war-ammunition and high-tech products, they are increasingly discharged into the environment. However, little is known about their eco-toxicology. While molybdenum is an important micronutrient and serves as co-factor in various key enzymes of microbes, plants and other higher lifeforms, W-enzymes are only found in some archaea and bacteria. Due to their chemical similarities regarding structure, atomic radii and electron configuration, it is proposed that molybdenum ions bound to co-factors of enzymes can be substituted by tungsten. In plants it has been repeatedly demonstrated that tungsten renders the four molybdoenzymes (nitrate reductase, aldehyde oxidase, xanthine dehydrogenase and sulfite oxidase), functionless if incorporated instead of molybednum. In addition, the rhizobial molybdoenzyme, nitrogenase, was found to retain its function even if tungsten is incorporated into the enzyme. Although it has been shown that both transition metals can be phytotoxic when occurring in excess concentrations, knowledge about their effect on plant metabolic processes is still limited. Due to preliminary experimental data obtained for W, we believe that the two transition metals interfere with integral metabolic pathways, especially phosphorous and nitrogen dependent processes. Additionally, it has already been shown that symbiotically grown leguminous plants respond differently to tungsten toxicity than their non-symbiotically grown counterparts. Still, our understanding of the mechanisms behind the molecular response to tungsten toxicity and similarities to molybdenum metabolism remains limited. We aim to comprehensively understand the molecular mechanisms behind phytotoxicity and stress response induced by excess tungsten and molybdenum as well as possible stress alleviation through Rhizobium symbiosis. In order to uncover the mechanisms that govern toxicity of Mo and W in plants as well as to identify possible benefits of bacterial symbiosis, soybean plants inoculated with Bradyrhizobium japonicum and a surface sterilized non-symbiotic control supplied with nitrate (10mM KNO3) were grown in a semi hydroponic setup for three weeks, until nodules were formed and symbiosis was fully established. After these three weeks, three different metal treatments (control, 0.5 mM tungsten and 0.5 mM molybdenum) for were applied for two weeks and subsequently harvested for metabolomic and proteomic analysis.
DOI: 10.5517/ccdc.csd.cc2b5mw1
title: CCDC 2150373: Experimental Crystal Structure Determination

description: Related Article: Qiong Wu, Yingying Chai, Ridong Huang, Hai Chen, Yang He|2023|CrystEngComm|25|6549|doi:10.1039/D3CE00916E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b5mx2
title: CCDC 2150374: Experimental Crystal Structure Determination

description: Related Article: Qiong Wu, Yingying Chai, Ridong Huang, Hai Chen, Yang He|2023|CrystEngComm|25|6549|doi:10.1039/D3CE00916E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bcx7w
title: CCDC 2156398: Experimental Crystal Structure Determination

description: Related Article: Junjiao Wang, Yongwei Shang, Xiujuan Zhao, Zhenli Cui, Yang Li, Ke-Hu Wang, Danfeng Huang, Yulai Hu, Na Wang, Lei Feng|2023|Chem.Commun.|59|14293|doi:10.1039/D3CC03854H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17043/tarfala-kirchner-2023-lake-temperature-1
title: Water temperatures from the arctic-alpine Lake Tarfala (Darfáljávri), Northern Sweden, 2019 – 2020 and 2021 – 2022
DOI: 10.25345/c5tm72b7h
title: MassIVE MSV000093571 - 20231123_ChemProp2_Non-targeted Metabolomics of Xenobiotic Biotransformations using synthetic gut bacterial community
title: ChemProp2 Dataset: Investigating potential biotransformations with a panel of 45 Drugs on Synthetic Community (Com20) to elucidate Drug-Microbiome-Host Dynamics
DOI: 10.6084/m9.figshare.21786643
title: Larval nutritional-stress and tolerance to extreme temperatures in the peach fruit fly, <i>Bactrocera zonata</i> (Diptera: Tephritidae)

description: Within the factors affecting insect tolerance to extreme environmental conditions, insect nutrition, particularly of immature stages, has received insufficient attention. In the present study, we address this gap by investigating the effects of larval nutrition on heat and cold tolerance of adult <i>Bactrocera zonata</i> – an invasive, polyphagous fruit fly pest. We manipulated the nutritional content in the larval diet by varying the amount of added yeast (2–10% by weight), while maintaining a constant sucrose content. Adults derived from the different larval diets were tested for their tolerance to extreme heat and cold stress. Restricting the amount of yeast reduced the efficacy of the larval diet (i.e. number of pupae produced per g of diet) as well as pupal and adult fresh weight, both being significantly lower for yeast-poor diets. Additionally, yeast restriction during the larval stage (2% yeast diet) significantly reduced the amount of protein but not lipid reserves of newly emerged males and females. Adults maintained after emergence on granulated sugar and water for 10 days were significantly more tolerant to extreme heat (i.e. knock-down time at 42 <sup>o</sup>C) when reared as larvae on yeast-rich diets (8% and 10% yeast) compared to counterparts developing on a diet containing 2% yeast. Nevertheless, the composition of the larval diet did not significantly affect adult survival following acute cold stress (exposure to −3°C for 2 hrs.). These results are corroborated by previous findings on Drosophilid flies. Possible mechanisms leading to nutrition-based heat-tolerance in flies are discussed.
DOI: 10.6084/m9.figshare.23717584
title: First record of <i>Stigmatomyces</i> (Ascomycota: Laboulbeniales) on Drosophilidae from Japan

description: Three <i>Stigmatomyces</i> species were detected on five drosophilid species from Japan. We report <i>Stigmatomyces majewskii</i> on <i>Drosophila rufa</i> and <i>Drosophila suzukii</i>, <i>Stigmatomyces scaptodrosophilae</i> on <i>Scaptodrosophila coracina</i> and <i>Scaptodrosophila subtilis</i>, and <i>Stigmatomyces sacaptomyzae</i> on <i>Scaptomyza graminum</i>. Except for <i>Scaptomyza graminum</i>, each of these species is a newly identified <i>Stigmatomyces</i> host. Our discovery that <i>D. suzukii</i> is a host of <i>S. majewskii</i> may provide new pest management approaches for this global agricultural pest insect.
DOI: 10.6084/m9.figshare.23717584.v1
title: First record of <i>Stigmatomyces</i> (Ascomycota: Laboulbeniales) on Drosophilidae from Japan

description: Three <i>Stigmatomyces</i> species were detected on five drosophilid species from Japan. We report <i>Stigmatomyces majewskii</i> on <i>Drosophila rufa</i> and <i>Drosophila suzukii</i>, <i>Stigmatomyces scaptodrosophilae</i> on <i>Scaptodrosophila coracina</i> and <i>Scaptodrosophila subtilis</i>, and <i>Stigmatomyces sacaptomyzae</i> on <i>Scaptomyza graminum</i>. Except for <i>Scaptomyza graminum</i>, each of these species is a newly identified <i>Stigmatomyces</i> host. Our discovery that <i>D. suzukii</i> is a host of <i>S. majewskii</i> may provide new pest management approaches for this global agricultural pest insect.
DOI: 10.6084/m9.figshare.21786643.v1
title: Larval nutritional-stress and tolerance to extreme temperatures in the peach fruit fly, <i>Bactrocera zonata</i> (Diptera: Tephritidae)

description: Within the factors affecting insect tolerance to extreme environmental conditions, insect nutrition, particularly of immature stages, has received insufficient attention. In the present study, we address this gap by investigating the effects of larval nutrition on heat and cold tolerance of adult <i>Bactrocera zonata</i> – an invasive, polyphagous fruit fly pest. We manipulated the nutritional content in the larval diet by varying the amount of added yeast (2–10% by weight), while maintaining a constant sucrose content. Adults derived from the different larval diets were tested for their tolerance to extreme heat and cold stress. Restricting the amount of yeast reduced the efficacy of the larval diet (i.e. number of pupae produced per g of diet) as well as pupal and adult fresh weight, both being significantly lower for yeast-poor diets. Additionally, yeast restriction during the larval stage (2% yeast diet) significantly reduced the amount of protein but not lipid reserves of newly emerged males and females. Adults maintained after emergence on granulated sugar and water for 10 days were significantly more tolerant to extreme heat (i.e. knock-down time at 42 <sup>o</sup>C) when reared as larvae on yeast-rich diets (8% and 10% yeast) compared to counterparts developing on a diet containing 2% yeast. Nevertheless, the composition of the larval diet did not significantly affect adult survival following acute cold stress (exposure to −3°C for 2 hrs.). These results are corroborated by previous findings on Drosophilid flies. Possible mechanisms leading to nutrition-based heat-tolerance in flies are discussed.
DOI: 10.6084/m9.figshare.24746190
title: <b>Geometric calibration of large-scale SAR images using wind turbines as ground control points</b>

description: The GCPtaba constructed from wind turbines across China, totaling 99614 turbines.
DOI: 10.6084/m9.figshare.24746190.v1
title: <b>Geometric calibration of large-scale SAR images using wind turbines as ground control points</b>

description: The GCPtaba constructed from wind turbines across China, totaling 99614 turbines.
DOI: 10.6084/m9.figshare.22807118
title: Effect of Salinity on the Development of Cladonema digitatum and its Invasiveness.rar

description: <br>raw data for Effect of Salinity on the Development and Dormancy of<i> Cladonema digitatum</i>
DOI: 10.6084/m9.figshare.22807118.v3
title: Effect of Salinity on the Development of Cladonema digitatum and its Invasiveness.rar

description: <br>raw data for Effect of Salinity on the Development and Dormancy of<i> Cladonema digitatum</i>
DOI: 10.6084/m9.figshare.22807118.v2
title: Effect of Salinity on the Development of Cladonema digitatum and its Invasiveness.rar

description: raw data for Effect of Salinity on the Development of Cladonema digitatum and its Invasiveness <br>
DOI: 10.5281/zenodo.10210549
title: scRNAseq of Danio rerio telencephalon

description: scRNA-sequencing dataset of Danio rerio telencephalon is provided for easier access as .rds objects:

telencephalon_cells.rds contains all cells and their respective supercluster-ID
neurons.subset.rds contains all neuronal cell types and their subcluster ID
DOI: 10.5281/zenodo.10210550
title: scRNAseq of Danio rerio telencephalon

description: scRNA-sequencing dataset of Danio rerio telencephalon is provided for easier access as .rds objects:

telencephalon_cells.rds contains all cells and their respective supercluster-ID
neurons.subset.rds contains all neuronal cell types and their subcluster ID
DOI: 10.6084/m9.figshare.24647532.v3
title: criminal-charge-in-taiwan.csv

description: This dataset is used for NLP research and primarily collects criminal judgment cases from Taiwan district courts from January 2020 to April 2022.
DOI: 10.6084/m9.figshare.24647532.v2
title: criminal-charge-in-taiwan.csv

description: This dataset is used for NLP research and primarily collects criminal judgment cases from Taiwan district courts from January 2020 to April 2022.
DOI: 10.5281/zenodo.10209092
title: Col de la Croix 1988 autumn survey radar tracking data

description: Individual tracks of free flying nocturnal migrants recorded by a military tracking radar (see Bruderer 1997):
Bruderer, B. The Study of Bird Migration by Radar Part 1: The Technical Basis*. Naturwissenschaften 84, 1–8 (1997). https://doi.org/10.1007/s001140050338 
 
Description of variables 
Code     site code (C88: Col de la Croix)
FNr        Track number starting each day at 00:00 with 1
Z             mean flight altitude (m above radar)
Rg           mean flight direction (°)
Ra           mean heading (°, body axis)
Vg          mean ground speed (cm/s)
Va          mean airspeed (cm/s)
Vz           mean climb rate (cm/s)
FieldClass            Echo class 1-9 based on wingbeat pattern, see description below
               
description of variable FieldClass            
Code     description
1             wader-type large (continuous wingbeats)
2             wader-type small (continuous wingbeats)
3             passerine-type large (regular phases of wingbeats and pauses => bounding flight)
4             passerine-type small (regular phases of wingbeats and pauses => bounding flight)
5             swift-type (irregular phases of wingbeats and pauses => flap-gliding flight)
6             raptor (visually identified)
7             single bird large (partly visually identified)
8             flock of unidentified birds
9             unknown bird
DOI: 10.5281/zenodo.10209093
title: Col de la Croix 1988 autumn survey radar tracking data

description: Individual tracks of free flying nocturnal migrants recorded by a military tracking radar (see Bruderer 1997):
Bruderer, B. The Study of Bird Migration by Radar Part 1: The Technical Basis*. Naturwissenschaften 84, 1–8 (1997). https://doi.org/10.1007/s001140050338 
 
Description of variables 
Code     site code (C88: Col de la Croix)
FNr        Track number starting each day at 00:00 with 1
Z             mean flight altitude (m above radar)
Rg           mean flight direction (°)
Ra           mean heading (°, body axis)
Vg          mean ground speed (cm/s)
Va          mean airspeed (cm/s)
Vz           mean climb rate (cm/s)
FieldClass            Echo class 1-9 based on wingbeat pattern, see description below
               
description of variable FieldClass            
Code     description
1             wader-type large (continuous wingbeats)
2             wader-type small (continuous wingbeats)
3             passerine-type large (regular phases of wingbeats and pauses => bounding flight)
4             passerine-type small (regular phases of wingbeats and pauses => bounding flight)
5             swift-type (irregular phases of wingbeats and pauses => flap-gliding flight)
6             raptor (visually identified)
7             single bird large (partly visually identified)
8             flock of unidentified birds
9             unknown bird
DOI: 10.6084/m9.figshare.24746277
title: <b>Metal ions shape </b><b>dissolved organic matter chemistry </b><b>and its chlorine reactivity: </b><b>Key functional groups and reactomics of unknown disinfection by-products</b>

description: This study revealed the influencing mechanisms of metal ions on DOM chemistry and chlorine reactivity in chlorination system via reactomics of functional group structure-dependent DBPs.
DOI: 10.6084/m9.figshare.24746277.v1
title: <b>Metal ions shape </b><b>dissolved organic matter chemistry </b><b>and its chlorine reactivity: </b><b>Key functional groups and reactomics of unknown disinfection by-products</b>

description: This study revealed the influencing mechanisms of metal ions on DOM chemistry and chlorine reactivity in chlorination system via reactomics of functional group structure-dependent DBPs.
DOI: 10.5281/zenodo.10888944
title: Data for Green's function eigenvalues and Berry curvature

description: Data files for Figs. 1B, 1C, 2A and 2B.
DOI: 10.5281/zenodo.10888945
title: Data for Green's function eigenvalues and Berry curvature

description: Data files for Figs. 1B, 1C, 2A and 2B.
DOI: 10.15468/dl.d2yqz8
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limonium minoricense Erben"
 ]
}

 The dataset includes 29 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046273-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z47pfd
title: Occurrence Download

description: A dataset containing 680 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ateles belzebuth É.Geoffroy Saint-Hilaire, 1806"
 ]
}

 The dataset includes 680 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046272-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rh3hs3
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis genychila Schltr."
 ]
}

 The dataset includes 53 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046274-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.