cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18442047
title: Supporting material: Orogeny of Ethiopian sky islands and Pliocene climate shifts promoted budding speciation and complex admixture in flightless Calosoma ground beetles

description: Supporting material for "Orogeny of Ethiopian sky islands and Pliocene climate shifts promoted budding speciation and complex admixture in flightless Calosoma ground beetles" 

 

 

alignments_partitions.zip all_loci.* contains all loci generated, 50p_loci_nofilter.* contains the 50% locus occupancy analysis and partitions, and arrowi_ref_SNP_processed.phy contains the SNP's used in the phylogenetic analysis



50p_loci_nofilter.fasta

50p_loci_nofilter.nex

all_loci.fasta

all_loci.nex

arrowi_ref_SNP_processed.phy


 

Both cluster.zip and localities.zip contain input BEAST anaysis files and resultswithin each are the colaescent constant and yule process analyses and results for each replicate; e.g.,:



coal_localities.log

coal_localities.ops

coal_localities.trees


 

popgen.zip contains the population genetic R analysis script in R markdown format and input data



popgen_Ethiopia_haplotypes_arrowi_ref_maxmiss0.5_thin1000_keeps.vcf.recode.vcf

popgen.Rmd

supporting_data.ods


 

structure.zip contains the generated structure file and structure analysis files



gestroi.str

"extraparams"

"mainparams"

seed.txt

10 replicates for K1-6


 

treefiles.zip contains all treefiles used in the analyses:



50p_nofilter_sansCBX0213_50runs.treefile

50p_nofilter_sansCBX0213_asteroid_r100_b1000.bestTree.newick

50p_nofilter_sansCBX0213_gCF.cf.tree

50p_nofilter_sansCBX0213_MFP_BB1000_locustrees.treefile

50p_nofilter_sansCBX0213_sCF.iqtree

50p_nofilter_wASTRAL_R.treefile

clusters_dating_loci.treefile

coal_cluster.combined.treeanntator.trees

preliminary_ML.treefile

species_dating_loci.treefile
DOI: 10.5281/zenodo.18442048
title: Supporting material: Orogeny of Ethiopian sky islands and Pliocene climate shifts promoted budding speciation and complex admixture in flightless Calosoma ground beetles

description: Supporting material for "Orogeny of Ethiopian sky islands and Pliocene climate shifts promoted budding speciation and complex admixture in flightless Calosoma ground beetles" 

 

 

alignments_partitions.zip all_loci.* contains all loci generated, 50p_loci_nofilter.* contains the 50% locus occupancy analysis and partitions, and arrowi_ref_SNP_processed.phy contains the SNP's used in the phylogenetic analysis



50p_loci_nofilter.fasta

50p_loci_nofilter.nex

all_loci.fasta

all_loci.nex

arrowi_ref_SNP_processed.phy


 

Both cluster.zip and localities.zip contain input BEAST anaysis files and resultswithin each are the colaescent constant and yule process analyses and results for each replicate; e.g.,:



coal_localities.log

coal_localities.ops

coal_localities.trees


 

popgen.zip contains the population genetic R analysis script in R markdown format and input data



popgen_Ethiopia_haplotypes_arrowi_ref_maxmiss0.5_thin1000_keeps.vcf.recode.vcf

popgen.Rmd

supporting_data.ods


 

structure.zip contains the generated structure file and structure analysis files



gestroi.str

"extraparams"

"mainparams"

seed.txt

10 replicates for K1-6


 

treefiles.zip contains all treefiles used in the analyses:



50p_nofilter_sansCBX0213_50runs.treefile

50p_nofilter_sansCBX0213_asteroid_r100_b1000.bestTree.newick

50p_nofilter_sansCBX0213_gCF.cf.tree

50p_nofilter_sansCBX0213_MFP_BB1000_locustrees.treefile

50p_nofilter_sansCBX0213_sCF.iqtree

50p_nofilter_wASTRAL_R.treefile

clusters_dating_loci.treefile

coal_cluster.combined.treeanntator.trees

preliminary_ML.treefile

species_dating_loci.treefile
DOI: 10.5281/zenodo.17931079
title: STED:Supplement Information and Demo data

description: STED: Single-cell Topic Modeling & Epigenetic Deconvolution

STED is a Python package designed for the analysis of single-cell and bulk multi-omics data. It leverages semi-supervised topic modeling (Anchored CorEx and LDA) to identify cell-type-specific gene modules in single-cell data and uses these models to deconvolve bulk RNA-seq, ATAC-seq and ChIP-seq data, estimating cell type proportions and predicting cell-type-specific epigenetic signals.
DOI: 10.5281/zenodo.18392158
title: SydTek Scholars Canon (v1.0)

description: SydTek Scholars Canon (v1.0) is a public, versioned canon + governance repository skeleton for SydTek Scholars (Mt. Gilead, NC)—built to serve as a K–12 covenant-school blueprint and an accreditation foundation. This release is the initial public structure intended for transparency, reproducibility, and long-term citation.

Purpose

This dataset provides a standardized “canon layer” for a school organization: mission/creed alignment, governance guardrails, policy + handbook templates, curriculum structure, assessment doctrine, and an accreditation self-study evidence framework—so the school can grow without losing consistency or accountability.

What’s included in this ZIP

Repository scaffolding for the SydTek Scholars Canon

Canon / governance baseline (structure for mission, doctrine, accountability)

Policies + handbooks templates (planned pack: safeguarding, privacy, AI integrity, acceptable use, admissions/tuition, etc.)

Curriculum structure guidance (scope & sequence + Hebrew thread placeholder)

Assessment/outcomes framework (portfolio doctrine placeholder)

Accreditation self-study outline + evidence index templates

Citation + release discipline

CITATION.cff (citable metadata)

CHANGELOG.md (version history; v1.0 released 2026-01-22)

Public accountability + privacy boundary

This canon is intended to be public for transparency and accountability.No student records are stored in this release; the canon is designed to keep private records out of the public repository.

Versioning

Version: v1.0

Release date: 2026-01-22

Changelog: CHANGELOG.md

How to cite

Use the CITATION.cff information and the Figshare DOI for this deposited ZIP.
DOI: 10.5281/zenodo.18450833
title: STED:Supplement Information and Demo data

description: STED: Single-cell Topic Modeling & Epigenetic Deconvolution

STED is a Python package designed for the analysis of single-cell and bulk multi-omics data. It leverages semi-supervised topic modeling (Anchored CorEx and LDA) to identify cell-type-specific gene modules in single-cell data and uses these models to deconvolve bulk RNA-seq, ATAC-seq and ChIP-seq data, estimating cell type proportions and predicting cell-type-specific epigenetic signals.
DOI: 10.5281/zenodo.18392157
title: SydTek Scholars Canon (v1.0)

description: SydTek Scholars Canon (v1.0) is a public, versioned canon + governance repository skeleton for SydTek Scholars (Mt. Gilead, NC)—built to serve as a K–12 covenant-school blueprint and an accreditation foundation. This release is the initial public structure intended for transparency, reproducibility, and long-term citation.

Purpose

This dataset provides a standardized “canon layer” for a school organization: mission/creed alignment, governance guardrails, policy + handbook templates, curriculum structure, assessment doctrine, and an accreditation self-study evidence framework—so the school can grow without losing consistency or accountability.

What’s included in this ZIP

Repository scaffolding for the SydTek Scholars Canon

Canon / governance baseline (structure for mission, doctrine, accountability)

Policies + handbooks templates (planned pack: safeguarding, privacy, AI integrity, acceptable use, admissions/tuition, etc.)

Curriculum structure guidance (scope & sequence + Hebrew thread placeholder)

Assessment/outcomes framework (portfolio doctrine placeholder)

Accreditation self-study outline + evidence index templates

Citation + release discipline

CITATION.cff (citable metadata)

CHANGELOG.md (version history; v1.0 released 2026-01-22)

Public accountability + privacy boundary

This canon is intended to be public for transparency and accountability.No student records are stored in this release; the canon is designed to keep private records out of the public repository.

Versioning

Version: v1.0

Release date: 2026-01-22

Changelog: CHANGELOG.md

How to cite

Use the CITATION.cff information and the Figshare DOI for this deposited ZIP.
DOI: 10.15468/dl.7m9hx5
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dicranolepis usambarica",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 148 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005554-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30998975
title: <i>In situ</i> TEM study of WO<sub>3</sub> structural and phase evolution in carbothermal reduction

description: Understanding the transformation pathways of WO<sub>3</sub> during carbothermal reduction (CTR) is crucial for tailoring the properties of tungsten-based nanopowders. In this study, the dynamic structural and phase evolution of WO<sub>3</sub> during CTR was investigated using <i>in situ</i> heating transmission electron microscopy. Three distinct pathways were identified: oriented growth into W<sub>18</sub>O<sub>49</sub> followed by reduction to W, direct reduction to W, and vapor-phase nucleation forming β-W and α-W. These pathways exhibit markedly different nucleation and growth mechanisms, critically influencing the final morphology and phase composition of the products.
DOI: 10.6084/m9.figshare.30998975.v1
title: <i>In situ</i> TEM study of WO<sub>3</sub> structural and phase evolution in carbothermal reduction

description: Understanding the transformation pathways of WO<sub>3</sub> during carbothermal reduction (CTR) is crucial for tailoring the properties of tungsten-based nanopowders. In this study, the dynamic structural and phase evolution of WO<sub>3</sub> during CTR was investigated using <i>in situ</i> heating transmission electron microscopy. Three distinct pathways were identified: oriented growth into W<sub>18</sub>O<sub>49</sub> followed by reduction to W, direct reduction to W, and vapor-phase nucleation forming β-W and α-W. These pathways exhibit markedly different nucleation and growth mechanisms, critically influencing the final morphology and phase composition of the products.
DOI: 10.6084/m9.figshare.30828172
title: Ultrastrong yet ductile additively manufactured multicomponent alloy-based composite strengthened by triple nanoprecipitates

description: A high-performance multicomponent alloy composite was fabricated through laser powder bed fusion (L-PBF) using a blended powder strategy followed by aging treatment. The resulting material exhibits an exceptional strength–ductility synergy, achieving a tensile strength of ∼1700MPa and total elongation of ∼12%. Rapid solidification during L-PBF refined in-situ nano-carbides/borides, while subsequent aging induced dense coherent L1<sub>2</sub> nanoprecipitates. The triple nanoparticles (Cr<sub>2</sub>B, TiC and L1<sub>2</sub>) provide synergistic strengthening, and coherent L12/matrix interfaces help maintain ductility by alleviating stress concentration. This approach integrates in-situ precipitation during additive manufacturing with post-heat treatment to achieve high-performance metal matrix composites.
DOI: 10.6084/m9.figshare.30828172.v1
title: Ultrastrong yet ductile additively manufactured multicomponent alloy-based composite strengthened by triple nanoprecipitates

description: A high-performance multicomponent alloy composite was fabricated through laser powder bed fusion (L-PBF) using a blended powder strategy followed by aging treatment. The resulting material exhibits an exceptional strength–ductility synergy, achieving a tensile strength of ∼1700MPa and total elongation of ∼12%. Rapid solidification during L-PBF refined in-situ nano-carbides/borides, while subsequent aging induced dense coherent L1<sub>2</sub> nanoprecipitates. The triple nanoparticles (Cr<sub>2</sub>B, TiC and L1<sub>2</sub>) provide synergistic strengthening, and coherent L12/matrix interfaces help maintain ductility by alleviating stress concentration. This approach integrates in-situ precipitation during additive manufacturing with post-heat treatment to achieve high-performance metal matrix composites.
DOI: 10.15468/dl.rjzgza
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "TaxonKey is Adopaeoides prittwitzi"
 ]
}

 The dataset includes 35 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005555-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yuk5vq
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drapetes muscosus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 41 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005557-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4an64y
title: Occurrence Download

description: A dataset containing 4939 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Orchesella villosa, Seira domestica, Seira squamornata, Orchesella cinta)",
 "OccurrenceStatus is one of (Present)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 4939 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005556-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvpr4p
title: Occurrence Download

description: A dataset containing 2567 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Achlyodes thraso"
 ]
}

 The dataset includes 2567 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005558-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drdtag
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Achlyodes pallida"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005559-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18450854
title: Figure data for publication "Robust Magnetic Polaron Percolation in the Antiferromagnetic CMR System EuCd2P2"

description: Figure data for the publication "Robust Magnetic Polaron Percolation in the Antiferromagnetic CMR System EuCd2P2"

The data is provided as a project file (".opju" extension) for the "Origin" data analysis software by Originlab Corporation.

Note: Tim Thyzel uploads this dataset on behalf of and as requested by the authors (Marvin Kopp, Charu Garg, Jens Müller). He was not involved in the collection of the data or its analysis, or in the publication referenced above.
DOI: 10.5281/zenodo.18450855
title: Figure data for publication "Robust Magnetic Polaron Percolation in the Antiferromagnetic CMR System EuCd2P2"

description: Figure data for the publication "Robust Magnetic Polaron Percolation in the Antiferromagnetic CMR System EuCd2P2"

The data is provided as a project file (".opju" extension) for the "Origin" data analysis software by Originlab Corporation.

Note: Tim Thyzel uploads this dataset on behalf of and as requested by the authors (Marvin Kopp, Charu Garg, Jens Müller). He was not involved in the collection of the data or its analysis, or in the publication referenced above.
DOI: 10.15468/dl.j8fhcu
title: Occurrence Download

description: A dataset containing 808 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Edgeworthia chrysantha",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 808 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005560-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rq446e
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Achalarus toxeus"
 ]
}

 The dataset includes 112 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005561-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57g4v5
title: Occurrence Download

description: A dataset containing 543 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Material sample, Specimen)",
 "TaxonKey is Inia geoffrensis"
 ]
}

 The dataset includes 543 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005562-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3gyeyq
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "TaxonKey is Achalarus lyciades"
 ]
}

 The dataset includes 86 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005563-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8397w7
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Englerodaphne subcordata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005564-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbzsnj
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Achalarus albociliatus"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005565-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18451006
title: ESFire30
DOI: 10.5281/zenodo.18451005
title: ESFire30
DOI: 10.15468/dl.pgwn4m
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enkleia malaccensis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 89 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005567-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dzpevu
title: Occurrence Download

description: A dataset containing 22320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Abaeis nicippe"
 ]
}

 The dataset includes 22320 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005566-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qky6wq
title: Occurrence Download

description: A dataset containing 26555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Orchesella villosa, Seira domestica, Seira squamornata, Orchesella cincta)",
 "OccurrenceStatus is one of (Present)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 26555 records from 172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005568-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvv3zj
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-70.22532 -19.18646,-70.01385 -19.18519,-70.00993 -19.01216,-70.22325 -19.01291,-70.22532 -19.18646))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 1500-2026"
 ]
}

 The dataset includes 21 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005569-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvw5uq
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gnidia humilis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 54 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005571-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgmrzh
title: Occurrence Download

description: A dataset containing 25636932 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Branta canadensis"
 ]
}

 The dataset includes 25636932 records from 1667 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005528-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s86c4d
title: Occurrence Download

description: A dataset containing 984 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Beyeria viscosa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 984 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003136-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14684974
title: Peer-to-Peer Boliviano (BOB) Exchange Data