cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9k4gg2
title: Occurrence Download

description: A dataset containing 472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anomis argillacea Hübner, 1823",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 472 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000970-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3tfvd
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Animalia)",
 "GadmGid is one of (COL)",
 "Year is 2024",
 "IucnRedListCategory is one of (CR, EN, VU)",
 "StateProvince is one of (magdalena)"
 ]
 }
 ]
}

 The dataset includes 136 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000971-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rv32w8
title: Occurrence Download

description: A dataset containing 2879 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dioscorea bulbifera L.",
 "Continent is Africa"
 ]
}

 The dataset includes 2879 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000972-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tatz9a
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.1_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus michauxii Nutt."
 ]
}

 The dataset includes 117 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000973-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14984173
title: Sententional Clitic Hosts in the Slavic Languages

description: This paper explores the behavior of clusterizing clitics in Slavic languages, examining their syntactic positioning within polypredicate structures. It outlines general principles that govern clitic ordering and distribution across different languages, contributing to the understanding of clitic interactions in syntax. Additionally, the study compares specific language examples to highlight variations and commonalities in clitic clustering.

I argue that Slavic languages pattern with other world's languages that have the option for attaching clause-level clitics and clitic clusters to the initial sentential constituent (IP or CP). The main theoretical goal of the talk is to show that a) sententional clitics hosts really exist in  Slavic languages and beyond, b) that hosts of clusterizing clitics are not extraclausal, contrary to  claims raised in [Agbayani & Golston 2010], c) the hypothesis on sententional clitic hosts can be  incorporated into syntactic approaches to clitic linearization.
DOI: 10.5281/zenodo.14984174
title: Sententional Clitic Hosts in the Slavic Languages

description: This paper explores the behavior of clusterizing clitics in Slavic languages, examining their syntactic positioning within polypredicate structures. It outlines general principles that govern clitic ordering and distribution across different languages, contributing to the understanding of clitic interactions in syntax. Additionally, the study compares specific language examples to highlight variations and commonalities in clitic clustering.

I argue that Slavic languages pattern with other world's languages that have the option for attaching clause-level clitics and clitic clusters to the initial sentential constituent (IP or CP). The main theoretical goal of the talk is to show that a) sententional clitics hosts really exist in  Slavic languages and beyond, b) that hosts of clusterizing clitics are not extraclausal, contrary to  claims raised in [Agbayani & Golston 2010], c) the hypothesis on sententional clitic hosts can be  incorporated into syntactic approaches to clitic linearization.
DOI: 10.5281/zenodo.15125422
title: Cacao flower micro-CT - clean, small, masked - Dataset No. 4

description: Theobroma cacao floral micro-CT datasets used to train UNETR for automated segmentation




Cleaner, large dataset*
Better quality CT datasets and cleanest segmentation files
N
4
19
4
0.24
DOI: 10.5281/zenodo.15125423
title: Cacao flower micro-CT - clean, small, masked - Dataset No. 4

description: Theobroma cacao floral micro-CT datasets used to train UNETR for automated segmentation




Cleaner, large dataset*
Better quality CT datasets and cleanest segmentation files
N
4
19
4
0.24
DOI: 10.15468/dl.2j5uqn
title: Occurrence Download

description: A dataset containing 5356 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schoenoplectus californicus (C.A.Mey.) Soják"
 ]
}

 The dataset includes 5356 records from 284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000974-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.289cvs
title: Occurrence Download

description: A dataset containing 83873 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-8.65861 40.95682,-8.6332 40.95682,-8.6332 40.97495,-8.65861 40.97495,-8.65861 40.95682))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 83873 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000960-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ubp2r
title: Occurrence Download

description: A dataset containing 2199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dioscorea dumetorum (Kunth) Pax",
 "Continent is Africa"
 ]
}

 The dataset includes 2199 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000976-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3esq9v
title: Occurrence Download

description: A dataset containing 11238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)"
 ]
}

 The dataset includes 11238 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000975-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8325aj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ferulago sandrasica Pesmen & Quézel"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009244-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjau9y
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phacelia distans Benth.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 147 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174228-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ssi2ll
title: Occurrence Download

description: A dataset containing 1156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Epipedobates anthonyi (Noble, 1921)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1156 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028999-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfk9cr
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ferulago sartorii Boiss."
 ]
}

 The dataset includes 32 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009252-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aswgyc
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ctenomys argentinus Contreras & Berry, 1982"
 ]
}

 The dataset includes 58 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0191519-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6nrjr9
title: Occurrence Download

description: A dataset containing 1461673 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Country is Colombia",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 1461673 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028999-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dfja6p
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron coulteri Porter, 1874",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 79 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161585-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wlnxie
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "TaxonKey is Melia azedarach L."
 ]
}

 The dataset includes 124 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029003-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xevxsm
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Latona madagascariensis (W.Wood, 1828))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 87 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009112-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec2zsn
title: Occurrence Download

description: A dataset containing 184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-84.60184 5.83765,-77.57422 5.83765,-77.57422 8.65015,-84.60184 8.65015,-84.60184 5.83765))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Porifera"
 ]
}

 The dataset includes 184 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0149550-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9iwnn
title: Occurrence Download

description: A dataset containing 17249 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gerbillus Desmarest, 1804"
 ]
}

 The dataset includes 17249 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004146-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641003_d1
title: Additional file 2: of Regenerative medicine in China: main progress in different fields

description: Clinical trials about active factors. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3641003_d2
title: Additional file 1: of Regenerative medicine in China: main progress in different fields

description: Clinical trials about stem cells. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3641012_d1
title: Additional file 4: of The influence of menstrual cycle and endometriosis on endometrial methylome

description: Functional annotation clustering of hypo- and hypermethylated genes in endometrial tissue using g:profiler bioinformatics tool. The complete lists of DMRs between different menstrual cycle phases was used to create the lists of Gene Ontology terms. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3641012_d2
title: Additional file 5: of The influence of menstrual cycle and endometriosis on endometrial methylome

description: Pathway analysis of hypo- and hypermethylated genes in endometrial tissue using g:profiler bioinformatics tool. The complete lists of DMRs between different menstrual cycle phases was used to create the list of Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3641012_d3
title: Additional file 7: of The influence of menstrual cycle and endometriosis on endometrial methylome

description: Menstrual cycle phase specific genes. The list of late-secretory and menstrual phase specific hyper- and hypomethylated genes. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3641012_d5
title: Additional file 2: of The influence of menstrual cycle and endometriosis on endometrial methylome

description: Differentially methylated regions between women with endometriosis and healthy women. The methylation data of all patients was compared to controls. Menstrual cycle day has not been taken into account. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3641012_d8
title: Additional file 8: of The influence of menstrual cycle and endometriosis on endometrial methylome

description: PCR primers used in the methylation validation analysis. PCR primers for the bisulfite-treated DNA were designed using MethPrimer[42]. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3641012_d7
title: Additional file 3: of The influence of menstrual cycle and endometriosis on endometrial methylome

description: Differentially methylated regions between different menstrual cycle phases. The methylation data of each menstrual cycle phase was compared to other phases. (XLSX 2676 kb)
DOI: 10.6084/m9.figshare.c.3641042_d2
title: Additional file 6: Table S4. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of all genes and expression profiles for each stage. A gene is considered expressed if the FPKM is larger than 1. All expressed genes for each stage and their annotation information based on the BLAST results against the Swiss-Prot database are included here. (XLSX 8428Â kb)
DOI: 10.6084/m9.figshare.c.3641042_d3
title: Additional file 4: Table S2. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of all genes and expression profiles for each of the 20 classes in the Gene Ontology category ‘Cellular Component’ (related to Fig. 5). For the top 20 enriched GO terms in the cellular component namespace, we list all genes associated with these GO terms (one GO term per sheet). The expression profiles and the annotation information based on the BLAST results against the Swiss-Prot database are also included. (XLSX 2059 kb)
DOI: 10.6084/m9.figshare.c.3641042_d4
title: Additional file 12: Table S8. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of genes in each cluster (related to Fig.Â 8). We classified all expressed genes into 15 clusters and all genes within the clusters are listed here. The expression profile and the annotation information are also included. (XLSX 1448Â kb)
DOI: 10.6084/m9.figshare.c.3641042_d6
title: Additional file 7: Table S5. of A transcriptional blueprint for a spiral-cleaving embryo

description: Highest exclusively expressed genes at each stage. The 30 highest exclusively expressed genes at 2, 4, 6, 8, 10, 12, and 14 hpf are shown including their calculated FPKM (see results for more details). (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3641042_d7
title: Additional file 3: Table S1. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of all genes and expression profiles for each of the 20 classes in the Gene Ontology category ‘Biological Process’ (related to Fig. 5). For the top 20 enriched GO terms in the biological process namespace, we list all genes associated with these GO terms (one GO term per sheet). The expression profiles and the annotation information based on the BLAST results against the Swiss-Prot database are also included. (XLSX 999 kb)
DOI: 10.6084/m9.figshare.c.3641042_d8
title: Additional file 10: Table S6. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of down-regulated genes between adjacent stages. Only genes that exhibit an FPKM of 10 or higher in the earlier stage are shown. The list is ordered by FDR (cutoff is 0.001) and includes the expression values and the annotated protein name. (XLSX 143Â kb)
DOI: 10.6084/m9.figshare.c.3641042_d12
title: Additional file 5: Table S3. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of all genes and expression profiles for each of the 20 classes in the Gene Ontology category ‘Molecular Function’ (related to Fig. 5). For the top 20 enriched GO terms in the molecular function namespace, we list all genes associated with these GO terms (one GO term per sheet). The expression profiles and the annotation information based on the BLAST results against the Swiss-Prot database are also included. (XLSX 1675 kb)
DOI: 10.6084/m9.figshare.c.3641042_d11
title: Additional file 14: Table S10. of A transcriptional blueprint for a spiral-cleaving embryo

description: Gene Ontology term enrichment in each cluster (related to Fig.Â 8 and Additional file 12: Table S8). For each cluster, we list the top 30 enriched GO terms. These GO terms are ordered by the number of GO terms associated with the genes in the clusters. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3641042_d13
title: Additional file 13: Table S9. of A transcriptional blueprint for a spiral-cleaving embryo

description: KEGG enrichment in each cluster (related to Fig.Â 8 and Additional file 12: Table S8). For each cluster, we list the top 30 enriched KEGG pathways. These KEGG pathways are ordered by the number of pathways associated with the genes in the clusters. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3641042_d14
title: Additional file 11: Table S7. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of up-regulated genes between adjacent stages. Only genes that exhibit an FPKM of 10 or higher in the later stage are shown. The list is ordered by FDR (cutoff is 0.001) and includes the expression values and the annotated protein name. (XLSX 123Â kb)
DOI: 10.6084/m9.figshare.c.3641084_d1
title: MOESM4 of Characterization and management of long runs of homozygosity in parental nucleus lines and their associated crossbred progeny

description: Additional file 4. Previously detected QTL based on AnimalQTLdb for regions with high levels of ROH within purebred populations. Description of QTL associations as outlined in AnimalQTLdb for regions with high levels of ROH within purebred populations.
DOI: 10.6084/m9.figshare.c.3641084_d2
title: MOESM3 of Characterization and management of long runs of homozygosity in parental nucleus lines and their associated crossbred progeny

description: Additional file 3. Test_Map. This file contains map information that relates to the Test_Genotype file (i.e. Additional file 2) in order to provide an example of how to run the program outlined in Additional file 1. Column one is the chromosome number and column 2 is nucleotide position.
DOI: 10.6084/m9.figshare.c.3641084_d4
title: MOESM2 of Characterization and management of long runs of homozygosity in parental nucleus lines and their associated crossbred progeny

description: Additional file 2. Test_Genotype. This file contains phased genotype information in order to provide an example of how to run the program outlined in Additional file 1. Column one is the animal ID and column 2 is the phased genotype information.
DOI: 10.6084/m9.figshare.c.3641120_d3
title: Additional file 8 of A multiple testing procedure for multi-dimensional pairwise comparisons with application to gene expression studies

description: Pathways identified in different sizes of tumors compared to normal myometrium. In the table, the enriched pathways are grouped and color coded according to different sizes of fibroids. The last column shows the negative of the logarithm of the BH adjusted p-value, computed by IPA. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3641120_d2
title: Additional file 9 of A multiple testing procedure for multi-dimensional pairwise comparisons with application to gene expression studies

description: RtPCR data. This table shows the RtPCR data for a subset of the genes that are identified in our analysis. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3641120_d4
title: Additional file 7 of A multiple testing procedure for multi-dimensional pairwise comparisons with application to gene expression studies

description: Differentially expressed probe sets in different sizes of tumors compared to normal myometrium. Significant probe sets are grouped and color coded according to different sizes of fibroids. The last column shows the BH-adjusted p-value for step 1 of the methodology. The columns under "Dunnett Adjusted P-values" show the p-values for step 2 of the methodology. (XLSX 1863 kb)
DOI: 10.6084/m9.figshare.c.3641138_d1
title: MOESM4 of Tissue-specific expression of histone H3 variants diversified after species separation

description: Additional file 4: Predicted CDS of rat histone H3 variants, contains Table S3 for the rat H3 sequence prediction results as an Excel file, which is the same format as Table S2.
DOI: 10.6084/m9.figshare.c.3641138_d2
title: MOESM5 of Tissue-specific expression of histone H3 variants diversified after species separation

description: Additional file 5: Similarity of amino acid and DNA sequence, contains Table S4, which shows amino acid and DNA sequence similarities between mouse H3 variant proteins/genes in Excel file.
DOI: 10.6084/m9.figshare.c.3641162_d1
title: MOESM4 of Improved sugar yields from biomass sorghum feedstocks: comparing low-lignin mutants and pretreatment chemistries

description: Additional file 4. R script to calculate overall sugar yields from ASE350 optimal temperature data using NU method.