cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9mnrpw
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Observation.org, Nature data from around the World",
 "GadmGid is DEU.10.42_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Lacerta agilis Linnaeus, 1758"
 ]
}

 The dataset includes 102 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013571-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whittington-ouc17009476
title: Stock prints of Jack Donovan, Los Angeles, Calif., 1939

description: 21 photographs of model Jack Donovan, some in costume, others in a suit, holding different objects such a telephone, clipboard, etc., probably at studio of Whittington in Los Angeles, California, 1939 August 3. "Client: Whittington" - on envelope. The negative envelopes show that the Whittington studio fulfilled 25 orders for prints, and sold the reproduction rights 21 times.
DOI: 10.25549/whittington-ouc17009491
title: Model Elaine Shepard, stock shots, Los Angeles, Calif., 1939

description: 7 photographs of photographers' model and actor Elaine Shepard, most likely at studio of Whittington in Los Angeles, California, 1939, August 9. "Client: Whittington; Classifications: H - Women heads; operator's report - name: Herb" - on envelopes. The negative envelope indicates that reproduction rights were sold once.
DOI: 10.15468/dl.dz9h8w
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Diplocladiella G.Arnaud ex M.B.Ellis",
 "Year is greater than or equal to 1991"
 ]
}

 The dataset includes 39 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013572-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whittington-ouc1sto914660
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.25549/whittington-ouc1sto914661
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.25549/whittington-ouc1sto914672
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.25549/whittington-ouc1sto914690
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.25549/whittington-ouc1sto914700
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.25549/whittington-ouc1sto918965
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.15468/dl.u59hgz
title: Occurrence Download

description: A dataset listing the 9 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((7.06231 53.9228,8.15869 53.9228,8.15869 54.55363,7.06231 54.55363,7.06231 53.9228))",
 "OccurrenceStatus is Present",
 "TaxonKey is Cetacea"
 ]
}

 The dataset's 9 records were derived from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013554-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whittington-ouc1sto918968
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.25549/whittington-ouc1sto918969
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.25549/whittington-ouc1sto918971
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.25549/whittington-ouc1sto918981
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.25549/whittington-ouc17006538
title: Candid shots at Page Military Academy, Los Angeles, Calif., 1938

description: 10 photographs of young men at a military academy, Los Angeles, California, 1938 May 25. Client: Radio Transcription, Lindsay McHarrie, 1509 No[rth] Vine; operator's report - name: Jack; 10 original photographs; 7 ext[erior], 3 int[erior]; in city; Amount: 22.50" - on envelope. "Meet Lindsay McHarrie and Clyde Wood at 1201 So[uth] Cochran, cor[ner] San Vicente; Job: candid shots of boys' life in military academy; charge to Radio Transcription; has regular account [checked]; art work: 1@ 3.00, 3@ 2.50 [=] 7.50, 6 @ 2.00 [=] 12.00 - [total] 22.50" -- on job card.
DOI: 10.25549/whittington-ouc17037426
title: Stock shots, John Sylvester, Los Angeles, Calif., 1939

description: 21 photographs of photographer's model John Sylvester, including portraits and staged scenes with properties or other models, at studio (Whittington) in Los Angeles, California, 1939 November 28. The negative envelope indicates that the Whittington studio fulfilled 6 print orders and sold reproduction rights 8 times. Editor's note: because these are labeled "stock shots," they were almost certainly taken on different dates, which are not recorded here. The date given in this record is from the negative envelope.
DOI: 10.15468/dl.qa6ymn
title: Occurrence Download

description: A dataset containing 36515 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset includes 36515 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013573-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whittington-ouc17037429
title: Noreen, Eleanor, Maxine, Los Angeles, Calif., 1939

description: 4 photographs with one print of the wife and 2 children of Joseph E. Carter, a longtime photographer in the Whittington studio, taken by Carter, probably at studio, Los Angeles, California, 1939 November 24. "Client: Joe Carter; 2 mounts; operator's report - name: Joe; including prints; Amount: 5.00" - on envelope. Prints in the envelope include 1 5x7 and a cutout of another print showing one child.
DOI: 10.15468/dl.vr35hd
title: Occurrence Download

description: A dataset containing 214633 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Abies alba Mill.)"
 ]
}

 The dataset includes 214633 records from 962 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013556-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whittington-ouc17037433
title: Pac. Greyhound bus, Los Angeles, Calif., 1939

description: 5 photographs of a Greyhound bus in a yard, Los Angeles, California, 1939 November 24. "Subject: Pac[ific] Greyhound bus, Chisholm Hackett et al. vs Pac[ific] Greyhound Lines." "Client: West[er]n Adj[usting] Bureau, 621 So[uth] Hope St[reet], Mr. Loretz; operator's report - name: 'Dick' [Whittington], in city; holiday; Amount: 11.00" - on envelope. "At Pac[ific] Greyhound garage, 713 Decatur St[reet]; Job: Wrecked bus - Sunset Beach accident: front & details, left & right sides, et al. See Mr. William" - on job card.
DOI: 10.25549/whittington-ouc17037444
title: Stock shots of Charles Stafford, Los Angeles, Calif., 1939

description: 9 photographs of a photographers' model, mostly portraits, but one with a camera and 2 with a telephone receiver, Los Angeles, California, 1939 November 28. "Client: Whittington stock; Classifications: H - Men posing professional, H - Men posing, Misc[ellaneous], H - Men's heads" - on envelope. The negative envelope indicates that the Whittington studio fulfilled 8 print orders and sold reproduction rights 5 times. Editor's note: because these are labeled "stock shots," they were almost certainly taken on different dates, which are not recorded here. The date given in this record is from the negative envelope.
DOI: 10.25549/whittington-ouc17009489
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.25549/whittington-ouc17005661
title: Copies of lights, buoys, etc., and copy of display cards, Los Angeles County, 1938

description: 6 photographs of the components of electrical buoys, along with a boat and man with a searchlight, probably in Los Angeles County, 1938 February 16. "Client: Lights, Inc., Mr. Wilson; also 8x10" -- on envelope front. "8 copies (print extra): 8x10; Amount: 8.00; #8475" -- on envelope back. The negative envelope indicates that the Whittington studio fulfilled 5 print orders.
DOI: 10.15468/dl.r28uzr
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Mezilaurus itauba (Meissner) Taubert)"
 ]
}

 The dataset includes 101 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013574-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npkojh
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cercosaura manicata O'Shaughnessy, 1881"
 ]
}

 The dataset includes 170 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000651-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvktf8
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((112.32861 23.95679,112.80322 23.4646,113.34815 23.37671,114.20947 23.16577,116.47705 23.35913,117.8877 24.4292,119.13135 25.80249,120.1333 27.2439,120.44971 29.68726,119.46533 32.23608,117.18018 32.85132,115.36963 32.85132,113.96338 32.71069,112.06494 32.11304,111.01025 28.89624,111.23877 26.61108,111.2915 25.64429,112.32861 23.95679))",
 "TaxonKey is Platalea minor Temminck & Schlegel, 1849"
 ]
}

 The dataset includes 25 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034767-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxuz46
title: Occurrence Download

description: A dataset containing 817 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rostellularia procumbens (L.) Nees"
 ]
}

 The dataset includes 817 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057545-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6bfcut
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Xenopus amieti Kobel, du Pasquier, Fischberg & Gloor, 1980"
 ]
}

 The dataset includes 111 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011616-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7igslf
title: Occurrence Download

description: A dataset listing the 32484 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "TaxonKey is Cricetidae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 32484 records were derived from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000651-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bfpht7
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crescentia alata Kunth"
 ]
}

 The dataset's 4 records were derived from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053749-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vdfd3n
title: Occurrence Download

description: A dataset containing 512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((112.32861 23.95679,112.80322 23.4646,113.34815 23.37671,114.20947 23.16577,116.47705 23.35913,117.8877 24.4292,119.13135 25.80249,120.1333 27.2439,120.44971 29.68726,119.46533 32.23608,117.18018 32.85132,115.36963 32.85132,113.96338 32.71069,112.06494 32.11304,111.01025 28.89624,111.23877 26.61108,111.2915 25.64429,112.32861 23.95679))",
 "TaxonKey is Ciconia boyciana Swinhoe, 1873"
 ]
}

 The dataset includes 512 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034760-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5s7a6w
title: Occurrence Download

description: A dataset containing 2360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bothrops asper (Garman, 1883)"
 ]
}

 The dataset includes 2360 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058200-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.puuqj5
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-149.27526 -37.52691,13.27526 -37.52691,13.27526 27.52691,-149.27526 27.52691,-149.27526 -37.52691))",
 "HasCoordinate is true",
 "TaxonKey is Chironectes minimus (Zimmermann, 1780)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 70 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027133-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpz7kg
title: Occurrence Download

description: A dataset containing 5555901 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset includes 5555901 records from 3162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294523-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ny25dp
title: Occurrence Download

description: A dataset containing 14272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atriplex vesicaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14272 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014663-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/4kf8-6f31
title: Parkes observations for project P630 semester 2011APRS_19

description: We propose to carry out the most ambitious and comprehensive all-sky survey for pulsars and transient sources to date. Using the 20cm multibeam and a new digital filterbank array this survey will create a petabyte digital record of the sky that can be data mined in the future and used to search for relativistic binary and millisecond pulsars, RRATs, and extragalactic radio bursts. The survey should discover 100s of new millisecond and normal pulsars and help define the lower limit to pulsar periods, test theories of relativistic gravity, find transients and provide pulsars for gravitational wave detection.
DOI: 10.25919/rzqe-0598
title: Parkes observations for project P630 semester 2011APRS_27

description: We propose to carry out the most ambitious and comprehensive all-sky survey for pulsars and transient sources to date. Using the 20cm multibeam and a new digital filterbank array this survey will create a petabyte digital record of the sky that can be data mined in the future and used to search for relativistic binary and millisecond pulsars, RRATs, and extragalactic radio bursts. The survey should discover 100s of new millisecond and normal pulsars and help define the lower limit to pulsar periods, test theories of relativistic gravity, find transients and provide pulsars for gravitational wave detection.
DOI: 10.25919/r0ek-3r82
title: Parkes observations for project P630 semester 2011APRS_23

description: We propose to carry out the most ambitious and comprehensive all-sky survey for pulsars and transient sources to date. Using the 20cm multibeam and a new digital filterbank array this survey will create a petabyte digital record of the sky that can be data mined in the future and used to search for relativistic binary and millisecond pulsars, RRATs, and extragalactic radio bursts. The survey should discover 100s of new millisecond and normal pulsars and help define the lower limit to pulsar periods, test theories of relativistic gravity, find transients and provide pulsars for gravitational wave detection.
DOI: 10.15468/dl.vtgu27
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atriplex vestita",
 "HasCoordinate is true"
 ]
}

 The dataset includes 240 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014664-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15693025
title: Puzzler Large Materials

description: Large file archive for Puzzler genome assembly pipeline v1.9. Note that the Apptainer container puzzler_v1.8.sif only contains the dependencies required, and those dependencies work for puzzler v1.9. To use Apptainer, fill out the samples.tsv with your runtime ("Apptainer"), the path to the .sif, and all your files. 

Note that there is also a fully contained Conda environment including the puzzler binary and all dependencies: https://anaconda.org/channels/heritabilities/packages/puzzler/overview

Link to Github repository for the software here: https://github.com/merondun/puzzler

The Fungus dataset (Fungus.HiFi.fastq.gz, *HiC.fastq.gz) consists of a small subset of reads from this project's genome assembly (100,000 HiFi reads and 10 million paired-end Hi-C reads), selected to enable rapid assembly testing (takes around 40 minutes with 16 cores and 64Gb RAM using --no_juice). 

The pipeline puzzler can be run with these files using puzzler -s Fungus -m samples.tsv, ensuring that you modify the paths to the working directory, container .sif, fastq.gz, and .fna. 

The large MP4 file shows Juicebox manual curation for the 11 benchmarked genomes, also archived on Youtube.
DOI: 10.5281/zenodo.17756307
title: Puzzler Large Materials

description: Large file archive for Puzzler genome assembly pipeline v1.9. Note that the Apptainer container puzzler_v1.8.sif only contains the dependencies required, and those dependencies work for puzzler v1.9. To use Apptainer, fill out the samples.tsv with your runtime ("Apptainer"), the path to the .sif, and all your files. 

Note that there is also a fully contained Conda environment including the puzzler binary and all dependencies: https://anaconda.org/channels/heritabilities/packages/puzzler/overview

Link to Github repository for the software here: https://github.com/merondun/puzzler

The Fungus dataset (Fungus.HiFi.fastq.gz, *HiC.fastq.gz) consists of a small subset of reads from this project's genome assembly (100,000 HiFi reads and 10 million paired-end Hi-C reads), selected to enable rapid assembly testing (takes around 40 minutes with 16 cores and 64Gb RAM using --no_juice). 

The pipeline puzzler can be run with these files using puzzler -s Fungus -m samples.tsv, ensuring that you modify the paths to the working directory, container .sif, fastq.gz, and .fna. 

The large MP4 file shows Juicebox manual curation for the 11 benchmarked genomes, also archived on Youtube.
DOI: 10.15468/dl.rkup5q
title: Occurrence Download

description: A dataset containing 88256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphyraena argentea",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 88256 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014647-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ab5m4r
title: Occurrence Download

description: A dataset containing 49182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphyraena barracuda",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 49182 records from 285 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014666-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mr9862
title: Occurrence Download

description: A dataset containing 12104414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Orectolobiformes, Lamniformes, Carcharhiniformes, Rhinopristiformes, Myliobatiformes, Osteoglossiformes, Clupeiformes, Perciformes, Elopiformes, Anguilliformes, Gonorynchiformes, Mugiliformes, Gobiesociformes, Beloniformes, Syngnathiformes, Tetraodontiformes, Testudines, Anseriformes, Caprimulgiformes, Charadriiformes, Galliformes, Phoenicopteriformes, Columbiformes, Apodiformes, Cuculiformes, Gruiformes, Sphenisciformes, Procellariiformes, Ciconiiformes, Pelecaniformes, Suliformes, Strigiformes, Accipitriformes, Trogoniformes, Coraciiformes, Piciformes, Falconiformes, Psittaciformes, Passeriformes, Chiroptera, Carnivora, Sirenia, Artiodactyla)"
 ]
}

 The dataset includes 12104414 records from 1493 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014656-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dt7w7r
title: Occurrence Download

description: A dataset containing 730 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium scabrum",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 730 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034411-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsu9mz
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudostypella nothofagi"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034413-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.