cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.rb1pp/1
title: Sampling data for steelhead at Tumwater Dam

description: Sampling data for adult steelhead at Tumwater Dam on the Wenatchee River, Washington, from 2007-2011.  Columns: id = sample id (tied to genotype file), offspring = number of offspring assigned to adult via parentage, Sex.Changed = indication that the original sex designation was corrected, spawn.year = spawning year for fish, date = date fish passed the dam, date-dec31 = day of year where Jan1 is "1", final.status = status of fish, age = age of fish years, fresh.salt = winter in fresh and salt water based on scale analysis, salt.age = years in the ocean, sex = sex, origin = hatchery or wild (natural) origin, fkl = fork length in cm, brood.type = prior generation cross that produced a hatchery fish, final_stream = inferred spawning location, season = season of migration at Tumwater day (based on day 160), day-june9 = day of migration based on days after June 9.
DOI: 10.5061/dryad.rb1pp/2
title: genotypes

description: Adult and juveniles genotypes at 96 single nucleotide polymorphism loci.  The "id" column for the adults is tied to the corresponding sample file.
DOI: 10.5061/dryad.rc3cp/4
title: Parental genotypes

description: Microsatellite genotypes for all adults spawned 2007-2009
DOI: 10.5061/dryad.s97c1/1
title: Oak leaf litter trait & decomposability as well as environmental variables data

description: File includes data about the oak leaf litter trait (litter quality), decomposability (ex situ decomposition processes). It also includes plots characteristics and environmental variables (understory light availability, understory vegetation and soil abiotic properties) used in the path analysis. We also included the abundance of each species for the understory plant community.
DOI: 10.5061/dryad.t4t73/1
title: Questionnaire responses
DOI: 10.5061/dryad.14811/17
title: Mass/SVL residuals ANOVA

description: ANOVA table generated in SAS comparing residuals of mass to SVL among different population groups.
DOI: 10.5061/dryad.28v5c/1
title: C. caroliniana seedling performance, tissue chemistry, and fungal community dissimilarities

description: This file contains all of the data necessary to replicate the analyses in the associated article, including seedling biomass data, tissue chemistry data, and measures of community dissimilarity between ancestral and experimental fungal communities.
DOI: 10.5061/dryad.2bv13/10
title: Gene Ontology Annotations for Symbiodinium Clade A transcriptome (kb8)

description: .tab file of GO term annotations for isogroups in the Symbiodinium Clade A transcriptome (strain kb8). Used as input for the statistical and plots R scripts.
DOI: 10.5061/dryad.2bv13/11
title: Raw expression counts for coral host

description: Table of raw read count data for the coral host by sample (ii=inshore to inshore; io=inshore to offshore; oi=offshore to inshore; oo=offshore to offshore; number indicates genotype). Used as input for the R statistical script.
DOI: 10.5061/dryad.2bv13/12
title: Raw expression counts for Symbiodinium

description: Table of raw read count data for in hospite Symbiodinium by sample (ii=inshore to inshore; io=inshore to offshore; oi=offshore to inshore; oo=offshore to offshore; number indicates genotype). Used as input for the R statistical script.
DOI: 10.5061/dryad.2bv13/13
title: Gene Name Annotations for Porites astreoides transcriptome

description: .tab file of gene name annotations for isogroups in the Porites astreoides transcriptome. Used as input for the statistical and plots R scripts
DOI: 10.5061/dryad.2bv13/5
title: DAPC assignments for host cellular response to stress genes

description: .csv file of DAPC assignments for environmental stress response genes - i.e. those annotated with the GO terms 'cellular response to stress' and 'ribosome biogenesis'. Used as input for statistical R script.
DOI: 10.5061/dryad.2bv13/6
title: Standardized traits in coral host

description: .csv file of standardized gene expression and fitness-related traits (percent weight gain) for the coral host. Used to calculate the costs of expression plasticity using the selection gradient method. Used as input for the statistical R script.
DOI: 10.5061/dryad.2bv13/7
title: Normalized expression data for ESR genes in the coral host

description: .csv file of normalized expression data by sample for genes annotated with either the 'cellular response to stress' or 'ribosome biogenesis' GO term. Used as input for R statistical script.
DOI: 10.5061/dryad.2bv13/8
title: DAPC assignments for all Symbiodinium genes

description: .csv file of DAPC assignments for all high expression Symbiodinium genes. Used as input for statistical R script.
DOI: 10.5061/dryad.2bv13/9
title: DAPC assignments for all coral host genes

description: .csv file of DAPC assignments for all high expression coral host genes. Used as input for statistical R script.
DOI: 10.5061/dryad.2gd3b/1
title: Soybean_Laisk_Curves

description: Photosynthetic CO2 response curves at sub-ambient [CO2] made at three subsaturating irradiances (aka 'Laisk' curves)  on 12 cultivars of Glycine max (n=5-8, N=72).
DOI: 10.5061/dryad.2gd3b/2
title: Field_LateVeg_absorptance

description: Leaf reflectance, transmittance, and absorptance for eight cultivars of soybean grown in the field and measured at the late vegetative growth stage.
DOI: 10.5061/dryad.2gd3b/3
title: Field_EarlyRep_absorptance

description: Leaf reflectance, transmittance, and absorptance for eight cultivars of soybean grown in the field and measured at the early reproductive growth stage.
DOI: 10.5061/dryad.2gd3b/4
title: Field_LateRep_absorptance

description: Leaf reflectance, transmittance, and absorptance for eight cultivars of soybean grown in the field and measured at the late reproductive growth stage.
DOI: 10.5061/dryad.2gp18.2
title: Data from: Characterizing genomic variation of Arabidopsis thaliana: the roles of geography and climate
DOI: 10.5061/dryad.2qp80/1
title: Species-by-sites abundance matrices

description: This zip file contains the coral and fish species-by-sites matrices of counts analyzed in the linked publication in Ecology Letters. Please see the Data_Readme.txt for details.
DOI: 10.5061/dryad.2qp80/2
title: R code to fit the unified model

description: This ZIP file contains 5 files needed to fit the unified model to the data in the CSV files (or similar data, formatted in the same way), to conduct parametric bootstrap goodness-of-fit testing, and to generate out-of-sample predictions of unshared species.
DOI: 10.5061/dryad.3019k/2
title: Raw Impedance and Image Data of Single Tumour Cells

description: The file is an Excel composed of five sheets named after five cell lines of H460, H446, A549, 95D and 95C, respectively. In each sheet of a specific cell type, the first row is the cell number and within each cell number, there are seven columns which are time (collected from impedance analyser), amplitude at 1 kHz, phase at 1 kHz, amplitude at 100 kHz, phase at 100 kHz, time (collected from high-speed camera) and aspiration length.
DOI: 10.5061/dryad.463qs/1
title: Raw data file info
DOI: 10.5061/dryad.463qs/2
title: Part1
DOI: 10.5061/dryad.463qs/3
title: Part2a
DOI: 10.5061/dryad.463qs/4
title: Part2b
DOI: 10.5061/dryad.463qs/5
title: Part3
DOI: 10.5061/dryad.4pr3r/6
title: Feeding Site GPS Recordings

description: the "Feeding Site GPS Recordings" file contains the GPS coordinates (UTM) of the eight baited feeding sites used throughout the experiment and the date that the coordinates were taken.
DOI: 10.5061/dryad.4pr3r/7
title: Feeding Times Amounts and Sites

description: The "Feeding Times Amounts and Sites" file contains details about how the feeding sites were fed. It contains information about the time and date of feeding, the food amount, the type of food (corn or boilie) and the site ID.
DOI: 10.5061/dryad.4pr3r/8
title: Fishing Catch All Fish

description: The "Fishing Catch All Fish" file contains information about all catches at all fishing sites - including carp and tench. The file includes the angler, the site, the species captured, whether the fish was landed or lost, the total length of the fish (mm), the  the bait and rod used and the number of pieces of bait.
DOI: 10.5061/dryad.4pr3r/9
title: Fishing Effort

description: The file "Fishing Effort" contains data about the fishing effort during the angling phase of the experiment. The file contains the site that was fished, the beginning time and the end time of a stretch of angling, the rod used and the bait used.
DOI: 10.5061/dryad.568jh/1
title: Dryad_Herrera_Flores_et_al_2017

description: This file includes the complete results of the geometric morphometrics analysis, evolutionary rates and phylomorphospace as well as an spreadsheet with supplementary information.
DOI: 10.5061/dryad.6536v/5
title: Reddy_sup_fileS3

description: List of taxa with voucher information and taxonomic details.An xlsx file with three sheets ("README", "EB2 species list", and "Full taxonomy"). The "Full taxonomy" sheet compares the clades proposed in Jarvis et al. 2014 and those proposed in Prum et al. 2015.
DOI: 10.5061/dryad.6536v/6
title: Reddy_sup_fileS4

description: List of EB2 loci along with information about the partitions within loci. An xlsx file with two sheets ("README" and "EB2 locus information").
DOI: 10.5061/dryad.6536v/8
title: Reddy_sup_fileS6_raxml_trees_ALLtaxset.tar

description: tar.gz file with 56 newick format trees generated by RAxML analyses of the "ALL" taxon set (defined in the manuscript). Folder also contains a README with additional information.
DOI: 10.5061/dryad.6bg56/2
title: CE_data

description: Data on Carboxylation efficiency for each maternal family (genotype) at each temperature in each generation of the experiment.  Families with an n are from Nicasio and those with an s are from Folsom Lake
DOI: 10.5061/dryad.6bg56/3
title: sla_wue_data

description: Specific leaf area and water use efficiency data for each maternal family (genotype).
DOI: 10.5061/dryad.6f052/1
title: Data1_ExtantM3Dataset

description: List of extant geomyid specimens used in the analyses of M3 shape. See main manuscript for repository abbreviations.
DOI: 10.5061/dryad.6f052/2
title: Data2_Extantp4Dataset

description: List of extant geomyid specimens used in the analyses of p4 shape. See main manuscript for repository abbreviations.
DOI: 10.5061/dryad.6f052/3
title: Data3_FossilM3Dataset

description: List of fossil geomyid specimens used in the analyses of M3 shape. See main manuscript for repository abbreviations.
DOI: 10.5061/dryad.6f052/4
title: Data4_Fossilp4Dataset

description: List of fossil geomyid specimens used in the analyses of p4 shape. See main manuscript for repository abbreviations.
DOI: 10.5061/dryad.6f052/5
title: Data5_M3AnalysesScores

description: Results of the geometric morphometric analyses of M3s.
DOI: 10.5061/dryad.6f052/6
title: Data6_p4AnalysesScores

description: Results of the geometric morphometric analyses of p4s.
DOI: 10.5061/dryad.77843/1
title: qPCR Estimates of trfA and 16S rRNA concentrations

description: The data provided are the estimates that resulted from raw qPCR fluorescence data (available upon request). The data are those used in the analyses described in the associated manuscript. See the ReadMe file for column descriptions.
DOI: 10.5061/dryad.7n82c/1
title: Data and analyses

description: Phylogenetic trees.  Sexual system tip states.  Scripts to fit macroevolutionary models.  Scripts to generate figures.  Other visual summaries of data and results.
DOI: 10.5061/dryad.c4j6t/1
title: Huetal2017_Centrarchid_Data

description: We used morphological and modeled kinematic data from 36 stomatopod species and 19 centrarchid species. Huetal2017_centrarchid_data.xlsx contains head length (HeadLength), jaw lengths (Jawlength), average relative link lengths (Coupler, Input, Output), and kinematic variables (MinKT, ScaledGape and Ang@MinKT) for all centrarchid species. Note that relative link length refers to the length of the mobile links (coupler, input and output) divided by the fixed link.
DOI: 10.5061/dryad.c4j6t/2
title: Huetal2017_Stomatopod_data

description: We used morphological and modeled kinematic data from 36 stomatopod species and 19 centrarchid species.  Huetal2017_stomatopod_data.xlsx contains carapace length (carapace), average relative link lengths (Coupler, Input, Output), and kinematic variables (MinKT, Dist and Ang@MinKT) for all stomatopod species. Note that relative link length refers to the length of the mobile links (coupler, input and output) divided by the fixed link.
DOI: 10.5061/dryad.c6kj2/1
title: At-site landscape values and locations

description: File containing environmental values and approximate locality information for all of the collection localities used in the study.
DOI: 10.5061/dryad.c6kj2/2
title: Genetic distances

description: Genetic distances (FST, DPS, and Jost's D) between every collection locality used in the study
DOI: 10.5061/dryad.d4j55.1/2.1
title: SuppTable_S1
DOI: 10.5061/dryad.d4j55.1/4.1
title: TRP_on_orchid_genes
DOI: 10.5061/dryad.d4j55.1/5.1
title: TRP_on_OM_genes
DOI: 10.5061/dryad.d4j55.1/6.1
title: SuppTable_S2
DOI: 10.5061/dryad.fm0r1/1
title: Data files and R script

description: All data files and the R script used for the analyses presented in this paper
DOI: 10.5061/dryad.g8h4s/1
title: Table S1 from 'Do group dynamics affect colour morph clines during a range shift?'

description: Colour morph frequencies, population densities, and sex ratios for populations of the blue-tailed damselfly (Ischnura elegans) located at the range expansion front, and ~ 500 km back from the expansion front. Please refer to the associated publication for further details.
DOI: 10.5061/dryad.hd4q3/1
title: Total and Shared RI

description: For each of the 5 species pair systems, point estimates and strongest and weakest estimates of total reproductive isolation from all available barriers and total reproductive isolation from four shared barriers that were measured in all 5 systems. Data presented in Figure 1 and Table S3.
DOI: 10.5061/dryad.hd4q3/2
title: Types of Isolation: Premating, Postmating, Intrinsic, Extrinsic

description: For each of the 5 species pair systems, point estimates and strongest and weakest estimates of four types of isolation: premating, postmating, postmating intrinsic, and postmating extrinsic. Data presented in Figure 3.
DOI: 10.5061/dryad.hd4q3/3
title: Individual Barrier Asymmetries

description: For each of the 5 species pair systems, weighted mean or single estimates 95%CIs for individual barrier strengths for each species, which allowed us to test for asymmetries between species. Data presented in Figure 5.
DOI: 10.5061/dryad.hd4q3/4
title: Total Isolation Asymmetries

description: For each of the 5 species pair systems, point estimates and strongest and weakest estimates for total isolation of each species, which allowed us to test for asymmetries between species. Data presented in Figure 6.
DOI: 10.5061/dryad.hh375/1
title: Animal overview

description: Overview of animals in the study.
DOI: 10.5061/dryad.hh375/2
title: 13-MI11515-01M

description: Magnetic resonance imaging data of animal 13-MI11515-01M, acquired with a Bruker 7 T magnet, with ParaVision 5.1 software. Each subfolder contains a ParaVisions study. The name of the subfolder refers to the date of data acquisition. An overview of all animals is provided in 'animal_overview.xlsx'.
DOI: 10.5061/dryad.hh375/3
title: 13-MI11515-02M

description: Magnetic resonance imaging data of animal 13-MI11515-02M, acquired with a Bruker 7 T magnet, with ParaVision 5.1 software. Each subfolder contains a ParaVisions study. The name of the subfolder refers to the date of data acquisition. An overview of all animals is provided in 'animal_overview.xlsx'.
DOI: 10.5061/dryad.hh375/4
title: 13-MI11515-03M

description: Magnetic resonance imaging data of animal 13-MI11515-03M, acquired with a Bruker 7 T magnet, with ParaVision 5.1 software. Each subfolder contains a ParaVisions study. The name of the subfolder refers to the date of data acquisition. An overview of all animals is provided in 'animal_overview.xlsx'.
DOI: 10.5061/dryad.hh375/5
title: 13-MI11515-04M

description: Magnetic resonance imaging data of animal 13-MI11515-04M, acquired with a Bruker 7 T magnet, with ParaVision 5.1 software. Each subfolder contains a ParaVisions study. The name of the subfolder refers to the date of data acquisition. An overview of all animals is provided in 'animal_overview.xlsx'.
DOI: 10.5061/dryad.hh375/6
title: 13-MI11515-05M

description: Magnetic resonance imaging data of animal 13-MI11515-05M, acquired with a Bruker 7 T magnet, with ParaVision 5.1 software. Each subfolder contains a ParaVisions study. The name of the subfolder refers to the date of data acquisition. An overview of all animals is provided in 'animal_overview.xlsx'.
DOI: 10.5061/dryad.hh375/7
title: 13-MI11993-01M

description: Magnetic resonance imaging data of animal 13-MI11993-01M, acquired with a Bruker 7 T magnet, with ParaVision 5.1 software. Each subfolder contains a ParaVisions study. The name of the subfolder refers to the date of data acquisition. An overview of all animals is provided in 'animal_overview.xlsx'.
DOI: 10.5061/dryad.hh375/8
title: 13-MI11993-02M

description: Magnetic resonance imaging data of animal 13-MI11993-02M, acquired with a Bruker 7 T magnet, with ParaVision 5.1 software. Each subfolder contains a ParaVisions study. The name of the subfolder refers to the date of data acquisition. An overview of all animals is provided in 'animal_overview.xlsx'.
DOI: 10.5061/dryad.p31vn/1
title: Data for the effects of inbreeding on competitive effort in Nicrophorus vespilloides
DOI: 10.5061/dryad.pp700/1
title: Egesta dissolved nutrient release, elemental contents, and respiration over time.

description: Data are divided among 3 sheets. The first sheet gives nutrient release recorded on each measurement day over 107 days. The second sheet gives egesta carbon, nitrogen, and phosphorus contents over the 107 d period. C contents were used to calculate long-term decomposition rates. The third sheet gives total respiration of egesta over the first 7 days of decomposition, used to calculate short-term decomposition rates.
DOI: 10.5061/dryad.t783j/1
title: LiYingbin-FE-2016-00794_data
DOI: 10.5061/dryad.v0rp5/1
title: Trifolium field co-occurrence data

description: csv file of occurrence values for T. fucatum and T. macraei at Bodega Bay, California
DOI: 10.5061/dryad.v0rp5/2
title: Trifolium greenhouse competition data

description: csv file of plant growth data for Trifolium fucatum and Trifolium macraei in greenhouse competition experiment
DOI: 10.5061/dryad.1j741/1
title: LOI data

description: Loss-on-ignition data for core SRS-4, SRS-5, SRS-6, and SRM
DOI: 10.5061/dryad.1j741/2
title: Pollen data

description: Pollen data for core SRS-4, SRS-5, SRS-6, and SRM
DOI: 10.5061/dryad.1j741/3
title: XRF data

description: X-ray fluorescence data for core SRS-4, SRS-5, SRS-6, and SRM
DOI: 10.5061/dryad.1j741/4
title: SRM BACON settings and ages

description: BACON data for core SRM
DOI: 10.5061/dryad.1tv72/1
title: Maugeretal_Cacutusgenotype

description: Crocodylus acutus genotype data from 9 microsatellite loci. Individuals were captured in several localities in Pacific Costa Rica (ACOSA=Osa Conservation Area; LB=Las Baulas National Park; PV=Palo Verde National Park; RT=Rio Tarcoles; SR=Santa Rosa National Park).
DOI: 10.5061/dryad.2bv13/14
title: Gene Name Annotations for Symbiodinium Clade A transcriptome (kb8)

description: .tab file of gene name annotations for isogroups in the Symbiodinium Clade A (strain kb8) transcriptome. Used as input for the statistical and plots R scripts
DOI: 10.5061/dryad.2gd3b/5
title: ControlledEnv_absorptance

description: Leaf reflectance, transmittance, and absorptance for twelve cultivars of soybean measured for the controlled environment portion of the study.
DOI: 10.5061/dryad.2gd3b/6
title: ControlledEnv_GasExchangeParameters

description: Data in this file are all measured and/or estimated gas exchange parameters from all soybean plants measured in the controlled environment portion of the study.
DOI: 10.5061/dryad.2gd3b/7
title: Field_GasExchangeParameters

description: Data in this file are all measured and/or estimated gas exchange parameters from all soybean plants measured in the field portion of the study.
DOI: 10.5061/dryad.2gp18.1
title: Data from: Characterizing genomic variation of Arabidopsis thaliana: the roles of geography and climate
DOI: 10.5061/dryad.2gp18.2/1.2
title: AccessionClimateData_MEC

description: This multiple page spreadsheet contains data giving climate conditions at the site where accessions were collected, the predicted flowering time status of accessions, and RDA SNP scores for the RDA of raw SNP variation, and the partial RDA after removing spatial structure.
DOI: 10.5061/dryad.2gp18.2/2.2
title: SNPs_Lasky_MEC.csv

description: SNPs used in analysis. Also used in Horton et al. (2012) Nature Genetics. Column names give ecotype numbers of accessions. Alleles are arbitrarily designated '0' or '1.'
DOI: 10.5061/dryad.2gp18.2/3.2
title: grseasRasters

description: Compressed directory with growing season condition rasters. Data sources and calculation details are found in the Molecular Ecology article (Lasky et al. 2012). These rasters can be read into R using the 'raster' function from the 'raster' package. For further details, and a complete list of included files, please see README_growCond.
DOI: 10.5061/dryad.30k4v.2
title: Data from: Phylogenomics of Lophotrochozoa with consideration of systematic error
DOI: 10.5061/dryad.30k4v.2/2.2
title: Preliminary_BI_results
DOI: 10.5061/dryad.30k4v.2/3.2
title: ML_results
DOI: 10.5061/dryad.45p94/1
title: European polecat pregnant uterine secretion proteome

description: Excel file with proteomics results, protein diagnostics and explanatory notes.
DOI: 10.5061/dryad.5337t/1
title: Dehydration test

description: Raw data of dehydration test of selected and control populations of Locusta migratoria. This file contains locusts masses that measured by analytical scales at different hydration states (full hydrated, at death, and dry mass).
DOI: 10.5061/dryad.5337t/2
title: Respirametry recording files

description: CO2 (channel 1) and H2O (channel 2) emission traces of locusts that recorded by Expedata software (Sable Systems International, Las Vegas, NV, USA). The additional readme file contains a list of respirometry recording file manes with description of each individual locust (recording date, ID, population and file name).
DOI: 10.5061/dryad.590jh/1
title: Raw data

description: Raw data related to Brumm, Zollinger, Niemelä, Sprau (2017) Measurement artefacts lead to false positives in the study of birdsong in noise. Methods in Ecology and Evolution.
DOI: 10.5061/dryad.5b45b/1
title: Raw data, white rhino dung VOCs

description: Details of all volatile organic compounds (VOCs) identified, and their associated concentration, in white rhino dung odours
DOI: 10.5061/dryad.5b45b/2
title: BEHAVIOUR DATA

description: Behavioural responses of white rhinos to synthetically reproduced odours
DOI: 10.5061/dryad.6536v/10
title: Reddy_sup_fileS8_ASTRAL_nextrees

description: Nexus treefile with the results of ASTRAL-RAxML and ASTRAL-IQ-TREE analyses for each taxon set. Additional information about the trees can be found as comments in the nexus treefile.
DOI: 10.5061/dryad.6536v/12
title: Reddy_sup_figS1_fileS1_indicator_clades

description: Description of the "magnificent seven" superordinal clades and the "indicator clades" that we used to determine whether an estimate of avian phylogeny has a "Jarvis-like" or "Prum-like" topology. Contains an illustration (Fig. S1) of the relevant clades and text describing the probability of recovering the indicator clades by chance.
DOI: 10.5061/dryad.6536v/13
title: Reddy_sup_figS2_Metaves

description: This figure shows the circumscription of "Metaves" in four previous studies and the topology of the EB2noJAR tree (the tree based on the Early Bird II data excluding overlaps with Jarvis et al. 2014).