cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/a6736df2e89b6fc5ab35905344616fcc
title: Quadrat-based monitoring of desert grassland vegetation at the Jornada Experimental Range, New Mexico, 1915-2016

description: The data set covers a 101-year period (1915-2016) of quadrat-based plant sampling at the Jornada Experimental Range in southern New Mexico. At each sampling event, a pantograph was used to record the location and perimeter of living plants within permanent quadrats. Basal area was recorded for perennial grass species, canopy cover area was recorded for shrub species, and all other perennial species were recorded as point data. The data set includes 122 1m by 1m permanent quadrats, although not all quadrats were sampled in each year of the study and there is a gap in monitoring from 1980-1995. These data provide a unique opportunity to investigate changes in the plant community over 100 years of variation in precipitation and other environmental conditions. We provide the following data and data formats: (1) the digitized maps in shapefile format; (2) data table containing coordinates (x,y) of perennial species within quadrats, including cover area for grasses and shrubs; (3) data table of counts of annual plant individuals per quadrat; (4) species list indicating growth form and habit of recorded species; (5) table of dates when each quadrat was sampled; (6) table of the pasture each quadrat was located within (note that pasture boundaries have changed over time). Additional data to help characterize plant-scale factors related to vegetation dynamics at the quadrat locations are: (7) data table of depth to caliche layer; (8) data table of soil particle size analysis and sand fractionation; and (9) data table of local and patch topography. This data package was created to support a specific data paper. Data are also available in data packages knb-lter-jrn.210351001, knb-lter-jrn.210351002, and knb-lter-jrn.210351003. Pantograph sampling is currently conducted at 5 year intervals by USDA-ARS staff, and new data will be added to those data packages periodically.
DOI: 10.6084/m9.figshare.13964219.v1
title: Gone with Gondwana: amphipod diversification in freshwaters preceded the breakup of the supercontinent

description: Aim The evolutionary origins of modern taxa are best understood as arising from the interplay of vicariance and dispersal. Vicariant events have long been considered responsible for Gondwanan distributions; such species are relics of the eponymic supercontinent on which they were thought to have originated. One such set of taxa are the freshwater members of the amphipod superfamily Hyaloidea, which due to their marine relatives and current distributions serve as an excellent model for testing vicariance and dispersal hypotheses. We investigated the evolutionary and biogeographic histories of the Hyaloidea using a molecular phylogenetic approach. Location North/South America, Australia Taxon Superfamily Hyaloidea Methods Publicly available nucleotide sequences from GenBank and BOLD were collected for 148 members of the order Amphipoda. These data, including sequences from two nuclear genes and one mitochondrial gene were aligned in order to examine evolutionary relationships within the order. Phylogenetic trees were reconstructed using both Maximum likelihood analyses and Bayesian inference, Bayesian trees were time calibrated based on previously estimated divergence dates. Results Maximum likelihood analyses and Bayesian inference, using two nuclear genes and one mitochondrial gene, reveal the freshwater amphipods within the superfamily (Hyalellidae/Chiltoniidae) as a monophyletic group within the superfamily. Members of this lineage are shown to have diverged from their marine ancestors during the Early Cretaceous period, suggesting a singular invasion of freshwater. Main conclusions A single Cretaceous divergence event for these animals rather than multiple Paleogene events is supportive of a vicariant origin following the breakup of Gondwana, instead of a recent marine invasion as has been previously hypothesized. The ancestor to the freshwater Hyaloidea likely invaded what is now Antarctica, allowing for dispersal across southern Gondwana. Fragmentation of the supercontinent would have severed gene flow between taxa, setting hyalellids and chiltoniids on separate evolutionary trajectories. A Cretaceous invasion by the Hyaloidea suggests that freshwater members represent a much older lineage than previously considered, occupying continental freshwaters prior to the gammarids in the Mesozoic and cotemporally with the crangonyctids in the Cenozoic. Our results highlight the utility of amphipods for testing biogeographic hypotheses that infer the origin of freshwater taxa.
DOI: 10.25403/upresearchdata.13312403
title: Investigating the impact that the mobile banking platform have on getting people in rural areas access to the financial services that meet their needs in order to participate in the economy

description: Interviews and questionnaire pertaining to the adoption of mobile payment services in rural areas. Atlas HU.hpr7 program was used to analyse the data.
DOI: 10.25403/upresearchdata.13312403.v1
title: Investigating the impact that the mobile banking platform have on getting people in rural areas access to the financial services that meet their needs in order to participate in the economy

description: Interviews and questionnaire pertaining to the adoption of mobile payment services in rural areas. Atlas HU.hpr7 program was used to analyse the data.
DOI: 10.5517/ccdc.csd.cc26h3sm
title: CCDC 2040320: Experimental Crystal Structure Determination

description: Related Article: Lucas Ueberricke, Farhad Ghalami, Wen-Shan Zhang, Vaishnavi Rao, Frank Rominger, Rasmus R. Schröder, Marcus Elstner, Michael Mastalerz|2021|Cryst.Growth Des.|21|1329|doi:10.1021/acs.cgd.0c01619
DOI: 10.5517/ccdc.csd.cc26h3tn
title: CCDC 2040321: Experimental Crystal Structure Determination

description: Related Article: Lucas Ueberricke, Farhad Ghalami, Wen-Shan Zhang, Vaishnavi Rao, Frank Rominger, Rasmus R. Schröder, Marcus Elstner, Michael Mastalerz|2021|Cryst.Growth Des.|21|1329|doi:10.1021/acs.cgd.0c01619
DOI: 10.5517/ccdc.csd.cc26h3vp
title: CCDC 2040322: Experimental Crystal Structure Determination

description: Related Article: Lucas Ueberricke, Farhad Ghalami, Wen-Shan Zhang, Vaishnavi Rao, Frank Rominger, Rasmus R. Schröder, Marcus Elstner, Michael Mastalerz|2021|Cryst.Growth Des.|21|1329|doi:10.1021/acs.cgd.0c01619
DOI: 10.5517/ccdc.csd.cc26h3wq
title: CCDC 2040323: Experimental Crystal Structure Determination

description: Related Article: Lucas Ueberricke, Farhad Ghalami, Wen-Shan Zhang, Vaishnavi Rao, Frank Rominger, Rasmus R. Schröder, Marcus Elstner, Michael Mastalerz|2021|Cryst.Growth Des.|21|1329|doi:10.1021/acs.cgd.0c01619
DOI: 10.5517/ccdc.csd.cc26h3ys
title: CCDC 2040325: Experimental Crystal Structure Determination

description: Related Article: Lucas Ueberricke, Farhad Ghalami, Wen-Shan Zhang, Vaishnavi Rao, Frank Rominger, Rasmus R. Schröder, Marcus Elstner, Michael Mastalerz|2021|Cryst.Growth Des.|21|1329|doi:10.1021/acs.cgd.0c01619
DOI: 10.5517/ccdc.csd.cc26hy8y
title: CCDC 2041110: Experimental Crystal Structure Determination

description: Related Article: Varvara V. Avdeeva, Anna V. Vologzhanina, Elena A. Ugolkova, Vadim V. Minin, Elena A. Malinina, Nikolay T. Kuznetsov|2021|J.Solid State Chem.|296|121989|doi:10.1016/j.jssc.2021.121989
DOI: 10.5517/ccdc.csd.cc26hy9z
title: CCDC 2041111: Experimental Crystal Structure Determination

description: Related Article: Varvara V. Avdeeva, Anna V. Vologzhanina, Elena A. Ugolkova, Vadim V. Minin, Elena A. Malinina, Nikolay T. Kuznetsov|2021|J.Solid State Chem.|296|121989|doi:10.1016/j.jssc.2021.121989
DOI: 10.5517/ccdc.csd.cc26hyb0
title: CCDC 2041112: Experimental Crystal Structure Determination

description: Related Article: Varvara V. Avdeeva, Anna V. Vologzhanina, Elena A. Ugolkova, Vadim V. Minin, Elena A. Malinina, Nikolay T. Kuznetsov|2021|J.Solid State Chem.|296|121989|doi:10.1016/j.jssc.2021.121989
DOI: 10.5517/ccdc.csd.cc26hyc1
title: CCDC 2041113: Experimental Crystal Structure Determination

description: Related Article: Varvara V. Avdeeva, Anna V. Vologzhanina, Elena A. Ugolkova, Vadim V. Minin, Elena A. Malinina, Nikolay T. Kuznetsov|2021|J.Solid State Chem.|296|121989|doi:10.1016/j.jssc.2021.121989
DOI: 10.5517/ccdc.csd.cc26h3xr
title: CCDC 2040324: Experimental Crystal Structure Determination

description: Related Article: Lucas Ueberricke, Farhad Ghalami, Wen-Shan Zhang, Vaishnavi Rao, Frank Rominger, Rasmus R. Schröder, Marcus Elstner, Michael Mastalerz|2021|Cryst.Growth Des.|21|1329|doi:10.1021/acs.cgd.0c01619
DOI: 10.5517/ccdc.csd.cc26pcbm
title: CCDC 2046320: Experimental Crystal Structure Determination

description: Related Article: Roshayed Ali Laskar, Wei Ding, Naohiko Yoshikai|2021|Org.Lett.|23|1113|doi:10.1021/acs.orglett.1c00039
DOI: 10.6084/m9.figshare.13292108.v3
title: Table A: Huntington Park Medical Clinics: Reasons for Declining Recruitment

description: Supplementary table (Table A) demonstrating reasons medical clinics declined to participate in the study entitled, "Information-Sharing on Mental Health and Polycystic Ovary Syndrome: A Qualitative Study," by Mayra Zamora and Melanie Sabado-Liwag.
DOI: 10.6084/m9.figshare.13964984
title: Vehicle1.bigWig

description: Preliminary study to visualize on browser
DOI: 10.6084/m9.figshare.13964984.v1
title: Vehicle1.bigWig

description: Preliminary study to visualize on browser
DOI: 10.6084/m9.figshare.13964990
title: Vehicle2.bigWig

description: Prelim data for broswer
DOI: 10.6084/m9.figshare.13964990.v1
title: Vehicle2.bigWig

description: Prelim data for broswer
DOI: 10.6084/m9.figshare.13964987
title: Vehicle3.bigWig

description: Preliminary data for browser
DOI: 10.25345/c5zr49
title: MassIVE MSV000086861 - Klein / Husselmann chia under salt and caffeic acid stress
title: Husselmann 2017: Following gel and TOF/TOF investigation of chia salinity stress by Achmat Williams [http://hdl.handle.net/11394/5650], Husselmann and Klein designed an LC-MS/MS experiment for five replicates in each of five cohorts: caffeic acid stress, salt stress, both stresses, and controls for black chia seeds, along with controls for white chia seeds. Extracted proteins were analyzed at the Centre for Proteome and Genome Research. Bell denatured proteins, reduced disulfides with TCEP and alkylated cysteines with MMTS, and digested proteins with trypsin in a HILIC magnetic bead workflow. The RPLC gradients yielded an average of 34,512 tandem mass spectra per LC-MS/MS experiment on the Thermo Q Exactive. Samples pooling all cohorts were also run in quadruplicate using the same method for normalization.
DOI: 10.17632/g74m3x5xks.3
title: Supplementary Montney Predictive Modeling Data
DOI: 10.17632/v6dt8dwrh8.2
title: RLN_Elasticity_Localization

description: Dataset for training and testing models described in Recurrent Localization Networks applied to the Lippmann-Schwinger Equation (https://arxiv.org/abs/2102.00063), accepted in Computational Materials Science. Contains 3D synthetic microstructures and strain fields (generation described in paper) for elastic stiffness contrast ratios 10 and 50. All fields are 31x31x31 voxels.
DOI: 10.17632/w359fz96rb.1
title: Longitudinal Data on Implementing Activity-Based Work Environment

description: Using a longitudinal field survey, we collect data on how implementing an activity-based work environment impacts perceived productivity, job satisfaction, and job strain across time [1]. The sample consisted of 100 employees in a government organization implementing an activity-based working environment with each employee surveyed on three time-points—Time 1–Time 3. The sample included all employees affected by the implementation. At each time-point, the response rate was 87%, 75%, and 69%, respectively, resulting in a total of 231 measurements. The sample was approximately 75% female at each time-point. Data collection took place a couple of months before the activity-based environment was implemented, again a couple of months after implementation, and finally, about six months later. The final survey took place about a year after the first survey. All data were collected using an online survey.
DOI: 10.17632/z3w42n4ctg.1
title: Simulated Data to Empirical Evaluation Based on The Monte Carlo Method

description: Based on prior methodological research in the field of factor analysis, the techniques of Tucker et al. (1969) with appropriate adaptations was used to generate four Monte Carlo population correlation matrices based on communality magnitudes (high, moderate, low, and mixed) with 100 indicator variables in each matrix. The population matrices were generated with the following characteristics: (a) continuous variables (measurement scale), (b) normal distribution, (c) 5-factor solutions (common factor), and (d) orthogonal solution (factor structure). Four correlation matrices for each level of VTF ratio, 4:1, 7:1 and 10:1, were randomly sampled from each set of population correlation matrices. Using five systematically increased STV ratios (2:1, 4:1, 8:1, 16:1, and 32:1), data sets with 1000 replications for each level of VTF ratio were generated.
DOI: 10.5067/gpme6ot998mt
title: OCO-2 Gridded bias-corrected XCO2 and other select fields aggregated as Level 4 daily files
DOI: 10.5067/pjgqzdtu78o7
title: Multi-Instrument Fused bias-corrected XCO2 and other select fields aggregated as Level 4 daily files
DOI: 10.5281/zenodo.4537889
title: Dataset related to article "Arginine-Based Poly(I:C)-Loaded Nanocomplexes for the Polarization of Macrophages Toward M1-Antitumoral Effectors"

description: This record contains data related to article “Arginine-Based Poly(I:C)-Loaded Nanocomplexes for the Polarization of Macrophages Toward M1-Antitumoral Effectors" Abstract: <strong>Background:</strong> Tumor-associated macrophages (TAMs), with M2-like immunosuppressive profiles, are key players in the development and dissemination of tumors. Hence, the induction of M1 pro-inflammatory and anti-tumoral states is critical to fight against cancer cells. The activation of the endosomal toll-like receptor 3 by its agonist poly(I:C) has shown to efficiently drive this polarization process. Unfortunately, poly(I:C) presents significant systemic toxicity, and its clinical use is restricted to a local administration. Therefore, the objective of this work has been to facilitate the delivery of poly(I:C) to macrophages through the use of nanotechnology, that will ultimately drive their phenotype toward pro-inflammatory states. <strong>Methods:</strong> Poly(I:C) was complexed to arginine-rich polypeptides, and then further enveloped with an anionic polymeric layer either by film hydration or incubation. Physicochemical characterization of the nanocomplexes was conducted by dynamic light scattering and transmission electron microscopy, and poly(I:C) association efficiency by gel electrophoresis. Primary human-derived macrophages were used as relevant <em>in vitro</em> cell model. Alamar Blue assay, ELISA, PCR and flow cytometry were used to determine macrophage viability, polarization, chemokine secretion and uptake of nanocomplexes. The cytotoxic activity of pre-treated macrophages against PANC-1 cancer cells was assessed by flow cytometry. <strong>Results:</strong> The final poly(I:C) nanocomplexes presented sizes lower than 200 nm, with surface charges ranging from +40 to -20 mV, depending on the envelopment. They all presented high poly(I:C) loading values, from 12 to 50%, and great stability in cell culture media. <em>In vitro</em>, poly(I:C) nanocomplexes were highly taken up by macrophages, in comparison to the free molecule. Macrophage treatment with these nanocomplexes did not reduce their viability and efficiently stimulated the secretion of the T-cell recruiter chemokines CXCL10 and CCL5, of great importance for an effective anti-tumor immune response. Finally, poly(I:C) nanocomplexes significantly increased the ability of treated macrophages to directly kill cancer cells. <strong>Conclusion:</strong> Overall, these enveloped poly(I:C) nanocomplexes might represent a therapeutic option to fight cancer through the induction of cytotoxic M1-polarized macrophages.
DOI: 10.5281/zenodo.4537888
title: Dataset related to article "Arginine-Based Poly(I:C)-Loaded Nanocomplexes for the Polarization of Macrophages Toward M1-Antitumoral Effectors"

description: This record contains data related to article “Arginine-Based Poly(I:C)-Loaded Nanocomplexes for the Polarization of Macrophages Toward M1-Antitumoral Effectors" Abstract: <strong>Background:</strong> Tumor-associated macrophages (TAMs), with M2-like immunosuppressive profiles, are key players in the development and dissemination of tumors. Hence, the induction of M1 pro-inflammatory and anti-tumoral states is critical to fight against cancer cells. The activation of the endosomal toll-like receptor 3 by its agonist poly(I:C) has shown to efficiently drive this polarization process. Unfortunately, poly(I:C) presents significant systemic toxicity, and its clinical use is restricted to a local administration. Therefore, the objective of this work has been to facilitate the delivery of poly(I:C) to macrophages through the use of nanotechnology, that will ultimately drive their phenotype toward pro-inflammatory states. <strong>Methods:</strong> Poly(I:C) was complexed to arginine-rich polypeptides, and then further enveloped with an anionic polymeric layer either by film hydration or incubation. Physicochemical characterization of the nanocomplexes was conducted by dynamic light scattering and transmission electron microscopy, and poly(I:C) association efficiency by gel electrophoresis. Primary human-derived macrophages were used as relevant <em>in vitro</em> cell model. Alamar Blue assay, ELISA, PCR and flow cytometry were used to determine macrophage viability, polarization, chemokine secretion and uptake of nanocomplexes. The cytotoxic activity of pre-treated macrophages against PANC-1 cancer cells was assessed by flow cytometry. <strong>Results:</strong> The final poly(I:C) nanocomplexes presented sizes lower than 200 nm, with surface charges ranging from +40 to -20 mV, depending on the envelopment. They all presented high poly(I:C) loading values, from 12 to 50%, and great stability in cell culture media. <em>In vitro</em>, poly(I:C) nanocomplexes were highly taken up by macrophages, in comparison to the free molecule. Macrophage treatment with these nanocomplexes did not reduce their viability and efficiently stimulated the secretion of the T-cell recruiter chemokines CXCL10 and CCL5, of great importance for an effective anti-tumor immune response. Finally, poly(I:C) nanocomplexes significantly increased the ability of treated macrophages to directly kill cancer cells. <strong>Conclusion:</strong> Overall, these enveloped poly(I:C) nanocomplexes might represent a therapeutic option to fight cancer through the induction of cytotoxic M1-polarized macrophages.
DOI: 10.34740/kaggle/dsv/1936018
title: US counties COVID 19 dataset
DOI: 10.6084/m9.figshare.13965902
title: Dataset Kluyvera paper

description: Molybdenum is an emerging pollutant in Malaysia. It is very toxic to ruminants and ways to remediate soil and waters contaminated with this metal is urgently needed. Coastal areas remediation warranted a seawater-tolerant molybdenum-reducing species. In this study, we report on the first isolation of a seawater-tolerant and novel Mo-reducing bacterium isolated from a costal area. The bacterium reduced soluble molybdenum into the colloidal molybdenum blue. The bacterium is tentatively identified as <i>Kluyvera</i> sp. strain UPM-FR1 based on molecular phylogenetics analysis. The optimized parameters for molybdenum reduction using response surface method (RSM) occurred at 30 <sup>o</sup>C, pH 6.75, sucrose as a carbon source, 30 mM sodium molybdate and 3.95 mM phosphate. before optimization via RSM, molybdenum reduction through OFAT by <i>Kluyvera</i> sp. strain UPM-FR1 showed a maximum absorbance value of 6.704±0.121 (after dilution) at 865 nm or 40.14±0.72 nmole Mo-blue, which increases to a value of 12.502 ± 0.033 (after dilution) or 74.86 ±0.2 nmole Mo blue after RSM indicating the great improvement through the use of RSM. The isolation of this bacterium provides a new possibility in coastal or aquatic ecosystems bioremediation of molybdenum.
DOI: 10.5281/zenodo.4539590
title: Supporting data for ACP submission on source region clustering at CHC 2017.12-2018.6

description: This dataset is provided as support for the publication of the manuscript: A new method for source region identification applied to the high-altitude site of Chacaltaya, Bolivia using WRF-FLEXPART and cluster analysis This dataset contains information regarding the release v03 of the timeseries for the cluster analysis performed at CHC station during the SALTENA campaign. the data folder contains the following files: description_cluster_series_v3.csv<br> description of all dimensions variables contained in cluster_series_v3.nc cluster_series_v3.nc<br> dataset for the cluster timeseries and pathway series pol6.kml<br> google earth polygones for the 6 pathways pol18.kml<br> google earth polygones for the 18 clusters
DOI: 10.5281/zenodo.4539589
title: Supporting data for ACP submission on source region clustering at CHC 2017.12-2018.6

description: This dataset is provided as support for the publication of the manuscript: A new method for source region identification applied to the high-altitude site of Chacaltaya, Bolivia using WRF-FLEXPART and cluster analysis This dataset contains information regarding the release v03 of the timeseries for the cluster analysis performed at CHC station during the SALTENA campaign. the data folder contains the following files: description_cluster_series_v3.csv<br> description of all dimensions variables contained in cluster_series_v3.nc cluster_series_v3.nc<br> dataset for the cluster timeseries and pathway series pol6.kml<br> google earth polygones for the 6 pathways pol18.kml<br> google earth polygones for the 18 clusters
DOI: 10.21227/9fwb-8978
title: PEM

description: trst
DOI: 10.5281/zenodo.4478233
title: Complementary materials for: Looking For Novelty in Search-based Software Product Line Testing (TSE)

description: In this repository, we provide complementary materials for the following paper: <pre>Y. Xiang, H. Huang, M. Li, S. Li and X. Yang, "Looking For Novelty in Search-based Software Product Line Testing" in <em>IEEE Transactions on Software Engineering</em>, vol. , no. 01, pp. 1-1, 5555. doi: 10.1109/TSE.2021.3057853 url: https://doi.ieeecomputersociety.org/10.1109/TSE.2021.3057853</pre> 1. Correlation analysis results (Pearson'r and p-value) are tabulated in CorrelationAnalysisResults.xlsx; 2. MATLAB scripts and raw data, which were used to perform correlation analyses, are given in RawDataForCorrelationAnalysis.rar. --------------------------------------------------------------------------------------------------------------------------------------- We suggest reproducing the correlation analysis, and other experiments described in the paper, using the codes provided at Github: https://github.com/gzhuxiangyi/TSE_NS