cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11999445.v1
title: Additional file 4 of Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing

description: Additional file 4 : Table S2 Statistics of gene expression values for each sample.
DOI: 10.6084/m9.figshare.13048024.v1
title: Whole-genome sequencing of rough <i>Brucella melitensis</i> in China provides insights into its genetic features

description: <i>Brucella</i> spp. can cause the zoonosis brucellosis, which affects public health and safety and even economic development. <i>B. melitensis</i> has a smooth phenotype, while 28 <i>B. melitensis</i> isolates had a rough phenotype in 2018. In this study, rough phenotype detection and whole genome sequencing methods were used to analyze the genetic features of rough <i>B. melitensis</i>. A drug susceptibility test was also performed. The results showed that the rough <i>B. melitensis</i> strains originated from strains isolated in China rather than from foreign strains. Furthermore, an MS tree showed that 9 complexes to be epidemic in China. For the rough <i>B. melitensis</i> strains, expression of the metabolic function genes varied in the earlier stages of evolution compared to the cellular process and signalling function genes. Expression of some transcriptional regulatory factors also varied in the later stages of evolution, and compared to MFS transporter genes, ABC transporter genes varied in the earlier stages. Moreover, as there was no significant difference in rifampicin, doxycycline and streptomycin susceptibility between the smooth and rough <i>B. melitensis</i> strains, treatment of brucellosis was not affected by strain type. This study provided important information for understanding the genetics and evolution of rough <i>B. melitensis</i> in China.
DOI: 10.6084/m9.figshare.11999448
title: Additional file 5 of Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing

description: Additional file 5 : Table S3 Statistics of novel lncRNAs in each sample.
DOI: 10.6084/m9.figshare.11999448.v1
title: Additional file 5 of Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing

description: Additional file 5 : Table S3 Statistics of novel lncRNAs in each sample.
DOI: 10.6084/m9.figshare.11999451
title: Additional file 6 of Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing

description: Additional file 6 : Table S4 Statistics of differentially expressed lncRNAs.
DOI: 10.6084/m9.figshare.11999451.v1
title: Additional file 6 of Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing

description: Additional file 6 : Table S4 Statistics of differentially expressed lncRNAs.
DOI: 10.6084/m9.figshare.11999454
title: Additional file 7 of Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing

description: Additional file 7 : Table S5 mRNA-lncRNA interaction analysis.
DOI: 10.6084/m9.figshare.11999454.v1
title: Additional file 7 of Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing

description: Additional file 7 : Table S5 mRNA-lncRNA interaction analysis.
DOI: 10.6084/m9.figshare.11999457
title: Additional file 8 of Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing

description: Additional file 8 : Table S6 Length distribution of unique miRNAs.
DOI: 10.6084/m9.figshare.11999457.v1
title: Additional file 8 of Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing

description: Additional file 8 : Table S6 Length distribution of unique miRNAs.
DOI: 10.6084/m9.figshare.11999460
title: Additional file 9 of Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing

description: Additional file 9 : Table S7 Summary of known and predicted miRNAs.
DOI: 10.6084/m9.figshare.11999460.v1
title: Additional file 9 of Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing

description: Additional file 9 : Table S7 Summary of known and predicted miRNAs.
DOI: 10.6084/m9.figshare.11999562
title: Biological characteristics associated with virulence in <i>Clostridioides difficile</i> ribotype 002 in Hong Kong

description: <i>Clostridioides difficile</i> infection (CDI) is a common cause of nosocomial diarrhea and can sometimes lead to pseudo-membranous colitis and toxic megacolon. We previously reported that the PCR ribotype 002 was a common <i>C. difficile</i> ribotype in Hong Kong that was associated with increased mortality. In this study, we assessed <i>in vitro</i> bacteriological characteristics and <i>in vivo</i> virulence of ribotype 002 compared to other common ribotypes, including ribotypes 012, 014 and 046. We observed significantly higher toxin A (<i>p &lt;</i> 0.05) and toxin B (<i>p </i>&lt; 0.05) production, sporulation (<i>p &lt;</i> 0.001) and germination rates (<i>p </i>&lt; 0.0001) in ribotype 002 than other common ribotypes. In a murine model of <i>C. difficile</i> infection, ribotype 002 caused significantly more weight loss (<i>p</i> &lt; 0.001) and histological damage (<i>p</i> &lt; 0.001) than other common ribotypes. These findings may have contributed to the higher prevalence and mortality observed, and provided mechanistic insights that can help public surveillance and develop novel therapeutics to combat against this infection.
DOI: 10.6084/m9.figshare.11999562.v1
title: Biological characteristics associated with virulence in <i>Clostridioides difficile</i> ribotype 002 in Hong Kong

description: <i>Clostridioides difficile</i> infection (CDI) is a common cause of nosocomial diarrhea and can sometimes lead to pseudo-membranous colitis and toxic megacolon. We previously reported that the PCR ribotype 002 was a common <i>C. difficile</i> ribotype in Hong Kong that was associated with increased mortality. In this study, we assessed <i>in vitro</i> bacteriological characteristics and <i>in vivo</i> virulence of ribotype 002 compared to other common ribotypes, including ribotypes 012, 014 and 046. We observed significantly higher toxin A (<i>p &lt;</i> 0.05) and toxin B (<i>p </i>&lt; 0.05) production, sporulation (<i>p &lt;</i> 0.001) and germination rates (<i>p </i>&lt; 0.0001) in ribotype 002 than other common ribotypes. In a murine model of <i>C. difficile</i> infection, ribotype 002 caused significantly more weight loss (<i>p</i> &lt; 0.001) and histological damage (<i>p</i> &lt; 0.001) than other common ribotypes. These findings may have contributed to the higher prevalence and mortality observed, and provided mechanistic insights that can help public surveillance and develop novel therapeutics to combat against this infection.
DOI: 10.6084/m9.figshare.4659565
title: Cranial Defect Datasets

description: Cranial Defect Datasets<br>Please use the following citations if you use them in your work:<br>M. Gall, et al. Cranial Defect Datasets. Figshare, 2017.<br><br>and<br>J. Egger, M. Gall, A. Tax, M. Ücal, U. Zefferer, X. Li, G. von Campe, U. Schäfer, D. Schmalstieg, X. Chen. “Interactive reconstructions of cranial 3D implants under MeVisLab as an alternative to commercial planning software“. In: PLoS ONE, 12(3): e0172694, 2017.https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0172694<br><br>
DOI: 10.15468/appcnv
title: Taxonomic diversity and abundance of enchytraeids (Annelida: Clitellata: Enchytraeida) in the Northern Palaearctic. 1. Asian part

description: The diversity and abundance of small soil oligochaetes – enchytraeids were studied in the different biomes of the Asiatic part of Northern Palaearctic. We delimited our sampling area by the Ural Mountains in the west and the Central Asian states in the south (specifically Uzbekistan and Mongolia), excluding China. A total of 131 georeferenced sites were investigated, spanning 7 biomes as classified by WWF (Olson et al., 2001): tundra, boreal forests, temperate coniferous forests, temperate broadleaf and mixed forests, temperate grasslands, savannas and shrublands, flooded grasslands and savannas, and desert and xeric shrublands. This effort yielded the collection of 39 distinct species.
DOI: 10.6084/m9.figshare.25106948
title: The long term spatiotemporal continuous CPChina datasets during 2005-2020

description: CPChina datasets provided information on cropping intensity with detailed information on grain crop types. Specifically, the cropping patterns included single cropping of three staple grain crops (rice/maize/wheat) and other crops, multiple cropping of staple grain crops (i.e. rice-maize), multiple cropping of staple grain crops (rice/maize/wheat) plus other crops (rotation of grain crop plus others), and others. The long-term spatiotemporal continuous CPChina datasets were developed based on MODIS time series images during 2005-2020.
DOI: 10.6084/m9.figshare.14889792
title: Additional file 4 of SMOOTH-seq: single-cell genome sequencing of human cells on a third-generation sequencing platform

description: Additional file 4: Table S3. Describes PCR validation.
DOI: 10.6084/m9.figshare.14889792.v1
title: Additional file 4 of SMOOTH-seq: single-cell genome sequencing of human cells on a third-generation sequencing platform

description: Additional file 4: Table S3. Describes PCR validation.
DOI: 10.5281/zenodo.10722805
title: Register of samples from landforms, including samples for radiocarbon and dendrochronological dating, palaeobotanical and artefact analyses. in the area in the area of old mining (northern Silesian Upland)

description: A register of samples from selected 20 landforms, including samples for radiocarbon and dendrochronological dating, palaeobotanical and artefact analyses. The register includes descriptions of each sample and the type of material for dating and analyses. Additionally: report on the results of radiocarbon dating, dendrochronological dating, palaeobotanical analyses. The report concludes on the origin and age of selected 20 landforms.

Data were used in:Malik, I., Bohr, M., Wistuba, M., Raab, T., Bonhage, A., Verschoof-van der Vaart, W., Raab, A., Woskowicz-Slęzak, B., 2023. Multi-Period Ore Exploitation in Upper Silesia, Central Europe. J. Field Archaeol. 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project contract no. PPN/GIN/2020/1/00008/U/ /00001.
DOI: 10.5281/zenodo.10722806
title: Register of samples from landforms, including samples for radiocarbon and dendrochronological dating, palaeobotanical and artefact analyses. in the area in the area of old mining (northern Silesian Upland)

description: A register of samples from selected 20 landforms, including samples for radiocarbon and dendrochronological dating, palaeobotanical and artefact analyses. The register includes descriptions of each sample and the type of material for dating and analyses. Additionally: report on the results of radiocarbon dating, dendrochronological dating, palaeobotanical analyses. The report concludes on the origin and age of selected 20 landforms.

Data were used in:Malik, I., Bohr, M., Wistuba, M., Raab, T., Bonhage, A., Verschoof-van der Vaart, W., Raab, A., Woskowicz-Slęzak, B., 2023. Multi-Period Ore Exploitation in Upper Silesia, Central Europe. J. Field Archaeol. 

The study was funded by the Polish National Agency for Academic Exchange, the Urgency Grants program, project contract no. PPN/GIN/2020/1/00008/U/ /00001.
DOI: 10.6084/m9.figshare.20388413.v1
title: Additional file 2 of Noninvasive fetal genotyping of single nucleotide variants and linkage analysis for prenatal diagnosis of monogenic disorders

description: Additional file 2. Table S2: Information of 36 SNPs for evaluation of NIFG.
DOI: 10.6084/m9.figshare.20388413
title: Additional file 2 of Noninvasive fetal genotyping of single nucleotide variants and linkage analysis for prenatal diagnosis of monogenic disorders

description: Additional file 2. Table S2: Information of 36 SNPs for evaluation of NIFG.
DOI: 10.6084/m9.figshare.20388410
title: Additional file 1 of Noninvasive fetal genotyping of single nucleotide variants and linkage analysis for prenatal diagnosis of monogenic disorders

description: Additional file 1. Table S1: Primer sequences for multiplex amplification of SNV loci.
DOI: 10.6084/m9.figshare.20388410.v1
title: Additional file 1 of Noninvasive fetal genotyping of single nucleotide variants and linkage analysis for prenatal diagnosis of monogenic disorders

description: Additional file 1. Table S1: Primer sequences for multiplex amplification of SNV loci.
DOI: 10.6084/m9.figshare.20388416
title: Additional file 3 of Noninvasive fetal genotyping of single nucleotide variants and linkage analysis for prenatal diagnosis of monogenic disorders

description: Additional file 3. Table S3: SNPs selected for linkage analysis of each gene.
DOI: 10.6084/m9.figshare.20388416.v1
title: Additional file 3 of Noninvasive fetal genotyping of single nucleotide variants and linkage analysis for prenatal diagnosis of monogenic disorders

description: Additional file 3. Table S3: SNPs selected for linkage analysis of each gene.
DOI: 10.6084/m9.figshare.20388419
title: Additional file 4 of Noninvasive fetal genotyping of single nucleotide variants and linkage analysis for prenatal diagnosis of monogenic disorders

description: Additional file 4. Table S4: NIFG results for diagnosis of X-linked recessive disorders.
DOI: 10.6084/m9.figshare.20388419.v1
title: Additional file 4 of Noninvasive fetal genotyping of single nucleotide variants and linkage analysis for prenatal diagnosis of monogenic disorders

description: Additional file 4. Table S4: NIFG results for diagnosis of X-linked recessive disorders.
DOI: 10.6084/m9.figshare.20388422
title: Additional file 5 of Noninvasive fetal genotyping of single nucleotide variants and linkage analysis for prenatal diagnosis of monogenic disorders

description: Additional file 5. Table S5: NIFG results for diagnosis of autosomal recessive disorders.
DOI: 10.6084/m9.figshare.20388422.v1
title: Additional file 5 of Noninvasive fetal genotyping of single nucleotide variants and linkage analysis for prenatal diagnosis of monogenic disorders

description: Additional file 5. Table S5: NIFG results for diagnosis of autosomal recessive disorders.
DOI: 10.15468/dl.fmyuvs
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pitcairnia caricifolia Mart. ex Schult. & Schult.f.",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 153 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003179-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ne2pu8
title: Occurrence Download

description: A dataset containing 7873 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abrus precatorius L."
 ]
}

 The dataset includes 7873 records from 334 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299686-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mckh8j
title: Occurrence Download

description: A dataset containing 21942 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is France",
 "Country is Germany",
 "Country is Spain",
 "Country is Portugal",
 "Country is Belgium",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Country is Netherlands",
 "Country is Italy"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Ailanthus altissima (Mill.) Swingle",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 21942 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023572-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zwygr
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cheilodipterus novemstriatus (Rüppell, 1838)"
 ]
}

 The dataset includes 93 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003180-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hawyhc
title: Occurrence Download

description: A dataset containing 6415 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Grevillea juniperina R.Br.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6415 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052844-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vppv6s
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetracha thomsoniana W.Horn, 1915"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006804-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xm6kkw
title: Occurrence Download

description: A dataset containing 2649806 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Unknown evidence",
 "BasisOfRecord is Literature Occurrence"
 ]
 },
 "Country is China"
 ]
}

 The dataset includes 2649806 records from 249 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279101-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqfi9e
title: Occurrence Download

description: A dataset containing 4472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ampithoidae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4472 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023578-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffin6h
title: Occurrence Download

description: A dataset containing 3572 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Piper umbellatum L.",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 3572 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003182-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3z2fgp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ophisternon aenigmaticum Rosen & Greenwood, 1976, Oreochromis mossambicus (Peters, 1852), Oreochromis mossambica (Peters, 1852), Oreochromis mozambica (Peters, 1852), Orechromis mossambica (Peters, 1852), Oreochromis niloticus (Linnaeus, 1758), Oreochromis niloticus (Greenwood, 1960), Oreochromis nilotics (Linnaeus, 1758))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Country is Saint Lucia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273399-200613084148143/datasets/export for details.
DOI: 10.15468/dl.aeev8s
title: Occurrence Download

description: A dataset containing 732 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Peromyscus eva Thomas, 1898",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 732 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006804-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxml2q
title: Occurrence Download

description: A dataset containing 11179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asteraceae",
 "Country is Venezuela (Bolivarian Republic of)"
 ]
}

 The dataset includes 11179 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023583-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgsfhh
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((134.32 -38.09,134.32 -19.91,170.68 -19.91,170.68 -38.09,134.32 -38.09))",
 "HasCoordinate is true",
 "TaxonKey is Toechima dasyrrhache Radlk.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 310 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003182-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5dedpm
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ficus carchiana C.C.Berg"
 ]
}

 The dataset includes 22 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023583-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f01xuc
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-67.40112 18.80024,-67.24292 17.58119,-64.11401 17.48062,-63.99097 17.8993,-64.99292 17.94947,-65.30933 18.76695,-67.40112 18.80024))",
 "HasCoordinate is true",
 "TaxonKey is Chionanthus ligustrinus (Sw.) Pers.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006804-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.