cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26985430
title: Additional file 1 of Genome wide association analysis of root hair traits in rice reveals novel genomic regions controlling epidermal cell differentiation

description: Additional file 1: Supplemental Tables 1-7. Supplemental Table 1. Genotypes and mean phenotypes used in this study. Supplemental Table 2: broad-sense heritability (h2) and genotypic coefficient of variance by subpopulation for RHL and RHD. Supplemental Table 3: Genes significantly associated with RHD and RHL using gene-block chromosome-wide analysis. Supplemental Table 4: All genes within significant genomic regions as identified by GWAS. Supplemental Table 5: Genes previously identified to play a role in rice RH formation or growth. Supplemental Table 6: Genes with RHE (cis-acting root hair elements) in the putative promoter region. Supplemental Table 7: Condensed list of candidate genes.
DOI: 10.6084/m9.figshare.26985427
title: Additional file 1 of Neocosmopolitan distributions of invertebrate aquatic invasive species due to euryhaline geographic history and human-mediated dispersal: Ponto-Caspian versus other geographic origins

description: Additional file 1: Table S1. Nonindigenous aquatic invertebrates based on Global Register of Introduced and Invasive Species (GRIIS 2022). Table S2. Ponto-Caspian nonindigenous aquatic invertebrate taxa based on Global Register of Introduced and Invasive Species (GRIIS 2022). Figure S3. Distributions of Ponto-Caspian aquatic invertebrates (based on GBIF-Global Biodiversity Information Facility, data available on 1 August 2022).
DOI: 10.6084/m9.figshare.26985430.v1
title: Additional file 1 of Genome wide association analysis of root hair traits in rice reveals novel genomic regions controlling epidermal cell differentiation

description: Additional file 1: Supplemental Tables 1-7. Supplemental Table 1. Genotypes and mean phenotypes used in this study. Supplemental Table 2: broad-sense heritability (h2) and genotypic coefficient of variance by subpopulation for RHL and RHD. Supplemental Table 3: Genes significantly associated with RHD and RHL using gene-block chromosome-wide analysis. Supplemental Table 4: All genes within significant genomic regions as identified by GWAS. Supplemental Table 5: Genes previously identified to play a role in rice RH formation or growth. Supplemental Table 6: Genes with RHE (cis-acting root hair elements) in the putative promoter region. Supplemental Table 7: Condensed list of candidate genes.
DOI: 10.6084/m9.figshare.26985439
title: Additional file 1 of Genome-wide association study of brain biochemical phenotypes reveals distinct genetic architecture of Alzheimer’s disease related proteins

description: Additional file 1: Table S1. Description of Dataset. Table S2. Description of Biochemical Measures. Table S3. Summary Statistics for SNPs with a p-value &lt; 1x10E-5 in all biochemical measures. Table S4. Estimated proportion of biochemical variance explained by GWS index SNPs. Table S5. Additional association model results for the GWS loci. Table S6. GWAS Summary statistics for all APOE index variants across phenotypes. Table S7. Description of Independent AMP-AD and Mayo Expansion Datasets. Table S8. Concordance between Imputed GWAS genotypes and Taqman/Sequencing genotypes. Table S9. Additional Annotations of GWS loci. Table S10. Analysis of GWS variants in the ADNI cohort. Table S11. Differentially expressed genes in two or more brain regions proximal to GWS variants in the AMP-AD RNAseq datasets. Table S12. Cell type specific differential expression of genes proximal to GWS variants. Table S13. Analysis of Significant AD GWAS SNPs from Kunkel et al 2019. Table S14. TaqMan Assays used for genotyping key variants. Figure S1. Histograms of biochemical measures. Figure S2. Circular Manhattan Plots with no GWS SNPs. Figure S3. Forest Plots. Figure S4. Summary of gene regulatory annotations for each GWS locus. Figure S5. Population Substructure via Eigenstrat Analysis. Figure S6. Quantile-Quantile (QQ) Plots of biochemical measure GWAS. Figure S7. Datasets used for manuscript analytics.
DOI: 10.6084/m9.figshare.26985439.v1
title: Additional file 1 of Genome-wide association study of brain biochemical phenotypes reveals distinct genetic architecture of Alzheimer’s disease related proteins

description: Additional file 1: Table S1. Description of Dataset. Table S2. Description of Biochemical Measures. Table S3. Summary Statistics for SNPs with a p-value &lt; 1x10E-5 in all biochemical measures. Table S4. Estimated proportion of biochemical variance explained by GWS index SNPs. Table S5. Additional association model results for the GWS loci. Table S6. GWAS Summary statistics for all APOE index variants across phenotypes. Table S7. Description of Independent AMP-AD and Mayo Expansion Datasets. Table S8. Concordance between Imputed GWAS genotypes and Taqman/Sequencing genotypes. Table S9. Additional Annotations of GWS loci. Table S10. Analysis of GWS variants in the ADNI cohort. Table S11. Differentially expressed genes in two or more brain regions proximal to GWS variants in the AMP-AD RNAseq datasets. Table S12. Cell type specific differential expression of genes proximal to GWS variants. Table S13. Analysis of Significant AD GWAS SNPs from Kunkel et al 2019. Table S14. TaqMan Assays used for genotyping key variants. Figure S1. Histograms of biochemical measures. Figure S2. Circular Manhattan Plots with no GWS SNPs. Figure S3. Forest Plots. Figure S4. Summary of gene regulatory annotations for each GWS locus. Figure S5. Population Substructure via Eigenstrat Analysis. Figure S6. Quantile-Quantile (QQ) Plots of biochemical measure GWAS. Figure S7. Datasets used for manuscript analytics.
DOI: 10.6084/m9.figshare.26985478.v1
title: Additional file 3 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 3: Supplementary Table S2. Joins made between scaffolds from Dvir_1.0 by L-RNA-Scaffolder based on assembled transcripts in the National Center for Biotechnology Information Transciptome Shotgun Assemby accession GHNJ00000000.1.
DOI: 10.6084/m9.figshare.26985481.v1
title: Additional file 4 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 4: Supplementary Table S3. Joins made between scaffolds from Dvir_1.0 by L-RNA-Scaffolder based on assembled transcripts in the National Center for Biotechnology Information Transciptome Shotgun Assemby accession ERZ1775117.1.
DOI: 10.6084/m9.figshare.26985502.v1
title: Additional file 11 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 11: Supplementary Table S8. Putative cytochrome P450s described from among Dvir_v2.0 RefSeq GCF_003013835.1 v100 gene models. A) 88 putative full-length gene models, and B) putative D. v. virgifera cytochrome P450s subfamily assignments.
DOI: 10.6084/m9.figshare.26985508
title: Additional file 13 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 13: Supplementary Table S10. Predicted differences in Dvir_v2.0 RefSeq GCF_003013835.1 v100 transcript model abundances after 12-hour exposures of Diabrotica virgifera virgifera larvae on maize compared to A) Miscanthus, B) Sorghum bicolor, C) Panicum virgatum and D) starvation conditions. Results shown for predicted p-value, and B-H adjusted p-value, and fold-change.
DOI: 10.6084/m9.figshare.26985508.v1
title: Additional file 13 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 13: Supplementary Table S10. Predicted differences in Dvir_v2.0 RefSeq GCF_003013835.1 v100 transcript model abundances after 12-hour exposures of Diabrotica virgifera virgifera larvae on maize compared to A) Miscanthus, B) Sorghum bicolor, C) Panicum virgatum and D) starvation conditions. Results shown for predicted p-value, and B-H adjusted p-value, and fold-change.
DOI: 10.6084/m9.figshare.26985511
title: Additional file 14 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 14: Supplementary Table S11. Gene ontology (GO) terms assigned to transcripts predicted to be significantly A) up-regulated and B) down-regulated.
DOI: 10.6084/m9.figshare.26985511.v1
title: Additional file 14 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 14: Supplementary Table S11. Gene ontology (GO) terms assigned to transcripts predicted to be significantly A) up-regulated and B) down-regulated.
DOI: 10.15468/dl.p5nssr
title: Occurrence Download

description: A dataset containing 3048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Diplorhynchus condylocarpon (Müll.Arg.) Pichon",
 "Continent is Africa"
 ]
}

 The dataset includes 3048 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011626-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26985493
title: Additional file 8 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 8: Supplementary Table S5b. Shared orthologous groups predicted by Orthofinder2. Input for Venn diagram in Figure 2B.
DOI: 10.6084/m9.figshare.26985493.v1
title: Additional file 8 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 8: Supplementary Table S5b. Shared orthologous groups predicted by Orthofinder2. Input for Venn diagram in Figure 2B.
DOI: 10.6084/m9.figshare.26985496
title: Additional file 9 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 9: Supplementary Table S6. Manually annotated chemosensory protein genes in the Dvir_2.0 assembly. Complete and fragmented models for A) B) odorant binding protein (OBP), C) D) odorant receptor (OR), and E) F) ionotropic receptor (IR) gene family members.
DOI: 10.6084/m9.figshare.26985496.v1
title: Additional file 9 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 9: Supplementary Table S6. Manually annotated chemosensory protein genes in the Dvir_2.0 assembly. Complete and fragmented models for A) B) odorant binding protein (OBP), C) D) odorant receptor (OR), and E) F) ionotropic receptor (IR) gene family members.
DOI: 10.5281/zenodo.6450798
title: (10)-Strobl2022A-DS0003 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (10)-Strobl2022A-DS0003 – Ceratitis capitata TREhs43-hidAla5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.6084/m9.figshare.26985478
title: Additional file 3 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 3: Supplementary Table S2. Joins made between scaffolds from Dvir_1.0 by L-RNA-Scaffolder based on assembled transcripts in the National Center for Biotechnology Information Transciptome Shotgun Assemby accession GHNJ00000000.1.
DOI: 10.6084/m9.figshare.26985481
title: Additional file 4 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 4: Supplementary Table S3. Joins made between scaffolds from Dvir_1.0 by L-RNA-Scaffolder based on assembled transcripts in the National Center for Biotechnology Information Transciptome Shotgun Assemby accession ERZ1775117.1.
DOI: 10.6084/m9.figshare.26985499.v1
title: Additional file 10 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 10: Supplementary Table S7. Manually annotated genes encoding ATP binding cassette (ABC) transporter proteins in the Dvir_2.0 assembly. Data shown for A) Translations from Diabrotica virgifera virgifera Dvir_v2.0 RefSeq GCF_003013835.1 v100 gene models, B) BLAST results for previously annotated D. v. virgifera ABC transporters against Dvir_v2.0 RefSeq GCF_003013835.1 v100 gene models, and C) putative D. v. virgifera ABC transporter subfamily assignments.
DOI: 10.6084/m9.figshare.26985502
title: Additional file 11 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 11: Supplementary Table S8. Putative cytochrome P450s described from among Dvir_v2.0 RefSeq GCF_003013835.1 v100 gene models. A) 88 putative full-length gene models, and B) putative D. v. virgifera cytochrome P450s subfamily assignments.
DOI: 10.5281/zenodo.5883669
title: (10)-Strobl2022A-DS0003 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (10)-Strobl2022A-DS0003 – Ceratitis capitata TREhs43-hidAla5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.5281/zenodo.5883670
title: (Strobl2022A-DS0003) Ceratitis capitata TREhs43-hid^Ala5_F1m2 live imaging data acquired with LSFM

description: (Strobl2022A-DS0003) <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 live imaging data acquired with light sheet fluorescence microscopy
DOI: 10.6084/m9.figshare.26985490
title: Additional file 7 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 7. Supplementary Table S5a. Orthologous groups predicted by Orthofinder2. Output from orthogroups.tsv.
DOI: 10.6084/m9.figshare.26985499
title: Additional file 10 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 10: Supplementary Table S7. Manually annotated genes encoding ATP binding cassette (ABC) transporter proteins in the Dvir_2.0 assembly. Data shown for A) Translations from Diabrotica virgifera virgifera Dvir_v2.0 RefSeq GCF_003013835.1 v100 gene models, B) BLAST results for previously annotated D. v. virgifera ABC transporters against Dvir_v2.0 RefSeq GCF_003013835.1 v100 gene models, and C) putative D. v. virgifera ABC transporter subfamily assignments.
DOI: 10.6084/m9.figshare.26985490.v1
title: Additional file 7 of A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect

description: Additional file 7. Supplementary Table S5a. Orthologous groups predicted by Orthofinder2. Output from orthogroups.tsv.
DOI: 10.5281/zenodo.6451099
title: (10)-Strobl2022A-DS0004 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (10)-Strobl2022A-DS0004 – Ceratitis capitata TREhs43-hidAla5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.5281/zenodo.5883671
title: (10)-Strobl2022A-DS0004 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (10)-Strobl2022A-DS0004 – Ceratitis capitata TREhs43-hidAla5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.6084/m9.figshare.26985523
title: Additional file 1 of A nontuberculous mycobacterium could solve the mystery of the lady from the Franciscan church in Basel, Switzerland

description: Additional file 1: Table S1. Sequencing basic statistics and mitochondrial haplogroup assignments. Table S2. Taxonomic classification on the bacterial species-level as estimated by mapping the metagenomic reads against the NCBI-nr database using DIAMOND/BLASTx mode and lowest common ancestor (LCA) assignment using MEGAN. Table S3. Basic assembly statistics and CheckM results of different assembly approaches. Table S4. Comparison of total number of bacterial-assigned reads, as estimated using DIAMOND search against NCBI-nr database and Brain_NTM-assigned reads by mapping. Table S5. The lengths, coverage, and GC content of the contigs of the brain NTM after combining SPAdes and MEGAHIT assemblies. Table S6. Metadata on the characterized members of the genus Mycolicibacterium. Table S7. Combined annotation of the contig_38. Table S8. CheckV results of the contig_38.
DOI: 10.6084/m9.figshare.26985523.v1
title: Additional file 1 of A nontuberculous mycobacterium could solve the mystery of the lady from the Franciscan church in Basel, Switzerland

description: Additional file 1: Table S1. Sequencing basic statistics and mitochondrial haplogroup assignments. Table S2. Taxonomic classification on the bacterial species-level as estimated by mapping the metagenomic reads against the NCBI-nr database using DIAMOND/BLASTx mode and lowest common ancestor (LCA) assignment using MEGAN. Table S3. Basic assembly statistics and CheckM results of different assembly approaches. Table S4. Comparison of total number of bacterial-assigned reads, as estimated using DIAMOND search against NCBI-nr database and Brain_NTM-assigned reads by mapping. Table S5. The lengths, coverage, and GC content of the contigs of the brain NTM after combining SPAdes and MEGAHIT assemblies. Table S6. Metadata on the characterized members of the genus Mycolicibacterium. Table S7. Combined annotation of the contig_38. Table S8. CheckV results of the contig_38.
DOI: 10.5281/zenodo.13736703
title: Data related to a 9000-year tree-ring chronology consisting of subfossil oak material from southern Scandinavia

description: The data available here is related to studies linking data from subfossil Danish and Swedish oak trees. Since these are ongoing studies, we will gradually make more data available as we publish new studies.
DOI: 10.5281/zenodo.13736704
title: Data related to a 9000-year tree-ring chronology consisting of subfossil oak material from southern Scandinavia

description: The data available here is related to studies linking data from subfossil Danish and Swedish oak trees. Since these are ongoing studies, we will gradually make more data available as we publish new studies.
DOI: 10.25574/19886
title: Chandra X-ray Observatory ObsId 19886

description: A Chandra Survey of high-redshift (0.7 &lt; z &lt; 0.8) clusters selected in the 100 deg^2 SPT-Pol Deep Field
DOI: 10.25574/21538
title: Chandra X-ray Observatory ObsId 21538

description: SPT Cl J0215-5014: A cool-core cluster at high redshift?
DOI: 10.25574/23045
title: Chandra X-ray Observatory ObsId 23045

description: SPT Cl J0215-5014: A cool-core cluster at high redshift?
DOI: 10.5281/zenodo.5883675
title: (10)-Strobl2022A-DS0006 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (10)-Strobl2022A-DS0006 – Ceratitis capitata TREhs43-hidAla5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.5281/zenodo.5883676
title: (Strobl2022A-DS0006) Ceratitis capitata TREhs43-hid^Ala5_F1m2 live imaging data acquired with LSFM

description: (Strobl2022A-DS0006) <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 live imaging data acquired with light sheet fluorescence microscopy
DOI: 10.5281/zenodo.6455038
title: (10)-Strobl2022A-DS0006 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (10)-Strobl2022A-DS0006 – Ceratitis capitata TREhs43-hidAla5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.25574/23191
title: Chandra X-ray Observatory ObsId 23191

description: SPT Cl J0215-5014: A cool-core cluster at high redshift?
DOI: 10.15468/dl.zsjwvq
title: Occurrence Download

description: A dataset containing 1265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Erythrophleum africanum (Benth.) Harms",
 "Continent is Africa"
 ]
}

 The dataset includes 1265 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011627-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.5883673
title: (10)-Strobl2022A-DS0005 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (10)-Strobl2022A-DS0004 – Ceratitis capitata TREhs43-hidAla5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.5281/zenodo.5883674
title: (Strobl2022A-DS0005) Ceratitis capitata TREhs43-hid^Ala5_F1m2 live imaging data acquired with LSFM

description: (Strobl2022A-DS0005) <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 live imaging data acquired with light sheet fluorescence microscopy
DOI: 10.5281/zenodo.6453980
title: (10)-Strobl2022A-DS0005 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (10)-Strobl2022A-DS0004 – Ceratitis capitata TREhs43-hidAla5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.6084/m9.figshare.26985589
title: Additional file 4 of Effectiveness of outpatient and community treatments for people with a diagnosis of ‘personality disorder’: systematic review and meta-analysis

description: Additional file 4.
DOI: 10.6084/m9.figshare.26985589.v1
title: Additional file 4 of Effectiveness of outpatient and community treatments for people with a diagnosis of ‘personality disorder’: systematic review and meta-analysis

description: Additional file 4.
DOI: 10.15468/dl.4rwc96
title: Occurrence Download

description: A dataset containing 1022 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syagrus orinocensis (Spruce) Burret"
 ]
}

 The dataset includes 1022 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011628-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26984899
title: metadata_Sanabria_updated_Mitsi_et_al_SciRep

description: Updated metadata table of Mitsi et al., Sci Rep (2023)
DOI: 10.6084/m9.figshare.26985616
title: Additional file 1 of Dynamic changes in whole genome DNA methylation, chromatin and gene expression during mouse lens differentiation

description: Additional file 1: Table S1. Genic annotations, binomial rank, and binomial p-values of UMRs and LMRs associated with GO biological process terms shown in Fig. 4A. Mean RPKM of associated gene (data from [43]).