cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21233/hper-r673
title: Atlantic Lake diatom surface sample dataset

description: Raw data for the Atlantic Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/gz90-8712
title: Lake Cathance diatom bottom sample dataset

description: Raw data for the Lake Cathance diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/810z-p560
title: PS2863 dinoflagellates dataset

description: Raw data for the PS2863 dinoflagellates dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/107m-6v77
title: Grand Traverse Bay testate amoebae surface sample dataset

description: Raw data for the Grand Traverse Bay testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/fyzp-yw32
title: Bloomingdale Bog testate amoebae surface sample dataset

description: Raw data for the Bloomingdale Bog testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/yk59-dk62
title: LDDsite3964 ostracode surface sample dataset

description: Raw data for the LDDsite3964 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/3cxg-g054
title: Centennial Parkway Site [SBCM 2.6.1] vertebrate fauna dataset

description: Raw data for the Centennial Parkway Site [SBCM 2.6.1] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/p2m8-gx04
title: NLA06608-1575 diatom surface sample dataset

description: Raw data for the NLA06608-1575 diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15353524
title: MD simulation data: Cryo-EM structures of HCV E2 glycoprotein bound to neutralizing and non-neutralizing antibodies determined using bivalent Fabs as fiducial markers

description: Associated MD simulation data of various unbound E2 models as described in Cryo-EM structures of HCV E2 glycoprotein bound to neutralizing and non-neutralizing antibodies determined using bivalent Fabs as fiducial markers

Contents

The four included tarballs contain MD simulation data for the wildtype (8thz_WT_MD) model as well as the HVR1-removed (8thz_dHVR1_MD), N1/N4/N6 glycan-removed (8thz_dN146_MD), and I568V/Q546L/T563V (8thz_I568V/Q546L/T563V_MD) variants. These tar balls contain six folders, Rep_1 to Rep_6, that contain production and data files for each of the six replicas and a toppar folder that contains the topology files used for each simulation.

Each replica folder includes:



The source .pdb file

The .psf file used as input for the simulation

Seperate .inp files for equilibration and production that were passed in as input during NAMD execution

.xsc and .xst files describing extended system configuration and system cell configuration information for both equilibration and production runs

The equilibration trajectory in .dcd format


Rep_1, Rep_2, and Rep_3 contain the full production trajectories in .dcd format. Due to upload storage limitations, final production files are omitted for replicas Rep_4, Rep_5, and Rep_6 of each system run. All files to recreate each production run are included for each replica and final trajectory files of Rep_4, Rep_5, and Rep_6 can be provided upon request.
DOI: 10.5281/zenodo.15353525
title: MD simulation data: Cryo-EM structures of HCV E2 glycoprotein bound to neutralizing and non-neutralizing antibodies determined using bivalent Fabs as fiducial markers

description: Associated MD simulation data of various unbound E2 models as described in Cryo-EM structures of HCV E2 glycoprotein bound to neutralizing and non-neutralizing antibodies determined using bivalent Fabs as fiducial markers

Contents

The four included tarballs contain MD simulation data for the wildtype (8thz_WT_MD) model as well as the HVR1-removed (8thz_dHVR1_MD), N1/N4/N6 glycan-removed (8thz_dN146_MD), and I568V/Q546L/T563V (8thz_I568V/Q546L/T563V_MD) variants. These tar balls contain six folders, Rep_1 to Rep_6, that contain production and data files for each of the six replicas and a toppar folder that contains the topology files used for each simulation.

Each replica folder includes:



The source .pdb file

The .psf file used as input for the simulation

Seperate .inp files for equilibration and production that were passed in as input during NAMD execution

.xsc and .xst files describing extended system configuration and system cell configuration information for both equilibration and production runs

The equilibration trajectory in .dcd format


Rep_1, Rep_2, and Rep_3 contain the full production trajectories in .dcd format. Due to upload storage limitations, final production files are omitted for replicas Rep_4, Rep_5, and Rep_6 of each system run. All files to recreate each production run are included for each replica and final trajectory files of Rep_4, Rep_5, and Rep_6 can be provided upon request.
DOI: 10.21233/zcyv-kz53
title: Porters diatom surface sample dataset

description: Raw data for the Porters diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/pctm-1410
title: Tucson Mountains, Pima Co., AZ vertebrate fauna dataset

description: Raw data for the Tucson Mountains, Pima Co., AZ vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/r3wn-yk17
title: Hay Bay water chemistry dataset

description: Raw data for the Hay Bay water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/50ft-5611
title: Hayes [23VE4] vertebrate fauna dataset

description: Raw data for the Hayes [23VE4] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/8jep-t823
title: Swan diatom surface sample dataset

description: Raw data for the Swan diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/emdp-bv91
title: Bol'shoy Lyakhovsky Island pollen dataset

description: Raw data for the Bol'shoy Lyakhovsky Island pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/4axz-r584
title: Van Wyck plant macrofossil dataset

description: Raw data for the Van Wyck plant macrofossil dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/tfec-e847
title: Hani testate amoebae surface sample dataset

description: Raw data for the Hani testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/zywt-ad22
title: Lake Iatt ostracode surface sample dataset

description: Raw data for the Lake Iatt ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/9bp2-k934
title: WYOSU44 pollen surface sample dataset

description: Raw data for the WYOSU44 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/pg4p-9v14
title: Hula testate amoebae surface sample dataset

description: Raw data for the Hula testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/j5cs-7t38
title: Gimlet diatom surface sample dataset

description: Raw data for the Gimlet diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ak16-zz97
title: Kentucky Trail Peatland testate amoebae surface sample dataset

description: Raw data for the Kentucky Trail Peatland testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.57761/p6pd-cg41
title: Medicare OASIS [2018-2019]
DOI: 10.57761/t1xw-pv20
title: Medicare OASIS [2018-2019]
DOI: 10.21233/8hma-d962
title: Clear Lake water chemistry dataset

description: Raw data for the Clear Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.11562230
title: Scenario data, model source code and plotting routine for manuscript: Separating CO2 emission from removal targets comes with limited cost impacts

description: This data archive contains REMIND model setup, results data and data analysis files for manuscript:Separating CO2 emission reduction from removal targets comes with limited cost impact.plotting(directory) contains results data, manuscript specific data analysis and plotting routine scripts used to generate the figures of the manuscript.remind(directory) contains REMIND model source code and scenario set-up. Detailed scenario configurations are set in remind/config/scenario_config_SepMark.csv.remind2(directory) contains the slightly modified R-library package used for post-processing of REMIND output.
DOI: 10.5281/zenodo.11562229
title: Scenario data, model source code and plotting routine for manuscript: Separating CO2 emission from removal targets comes with limited cost impacts

description: This data archive contains REMIND model setup, results data and data analysis files for manuscript:Separating CO2 emission reduction from removal targets comes with limited cost impact.plotting(directory) contains results data, manuscript specific data analysis and plotting routine scripts used to generate the figures of the manuscript.remind(directory) contains REMIND model source code and scenario set-up. Detailed scenario configurations are set in remind/config/scenario_config_SepMark.csv.remind2(directory) contains the slightly modified R-library package used for post-processing of REMIND output.AMENDMENTPlots_SeparateMarkets_afterReviewProcess.Rmd After the review process, the new plotting script was added including the additional figures in the Supplementary Material. This file should replace the previous R-markdown file SepMark_essential/plotting/Plots_SeparateMarkets.Rmd.
DOI: 10.5281/zenodo.15367999
title: Scenario data, model source code and plotting routine for manuscript: Separating CO2 emission from removal targets comes with limited cost impacts

description: This data archive contains REMIND model setup, results data and data analysis files for manuscript:Separating CO2 emission reduction from removal targets comes with limited cost impact.plotting(directory) contains results data, manuscript specific data analysis and plotting routine scripts used to generate the figures of the manuscript.remind(directory) contains REMIND model source code and scenario set-up. Detailed scenario configurations are set in remind/config/scenario_config_SepMark.csv.remind2(directory) contains the slightly modified R-library package used for post-processing of REMIND output.AMENDMENTPlots_SeparateMarkets_afterReviewProcess.Rmd After the review process, the new plotting script was added including the additional figures in the Supplementary Material. This file should replace the previous R-markdown file SepMark_essential/plotting/Plots_SeparateMarkets.Rmd.
DOI: 10.21233/sqc4-kc11
title: Rogaguado site 8 pollen surface sample dataset

description: Raw data for the Rogaguado site 8 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/dv98-k257
title: Skinner Lake water chemistry dataset

description: Raw data for the Skinner Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/benb-qb30
title: LDDsite2832 ostracode surface sample dataset

description: Raw data for the LDDsite2832 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.fmepe8
title: Occurrence Download

description: A dataset containing 8402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Colombia, Panama, Brazil, Venezuela (Bolivarian Republic of), Mexico)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Caiman crocodilus (Linnaeus, 1758)"
 ]
}

 The dataset includes 8402 records from 220 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022295-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/zmdy-x839
title: Spires SP2 vertebrate fauna dataset

description: Raw data for the Spires SP2 vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/xnqh-ed06
title: Natural Bridges National Monument plant macrofossil dataset

description: Raw data for the Natural Bridges National Monument plant macrofossil dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/79mh-hn04
title: Harbor Point (Fritz et al 2004) diatom dataset

description: Raw data for the Harbor Point (Fritz et al 2004) diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/abwn-p323
title: Kugzruk [Pond] [AKTEL149] vertebrate fauna dataset

description: Raw data for the Kugzruk [Pond] [AKTEL149] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/tmfw-xj23
title: LDDsite1596 water chemistry dataset

description: Raw data for the LDDsite1596 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.34740/kaggle/dsv/11651531
title: fitness-data-mi-band8
DOI: 10.21233/k2d8-as02
title: Peel River water chemistry dataset

description: Raw data for the Peel River water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/fp68-dk37
title: Reviers pollen dataset

description: Raw data for the Reviers pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/qky3-m272
title: Finiels pollen dataset

description: Raw data for the Finiels pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/92rh-dh75
title: Manakaway macroinvertebrate dataset

description: Raw data for the Manakaway macroinvertebrate dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/txfr-hf21
title: McKenna Lagoon pollen dataset

description: Raw data for the McKenna Lagoon pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.zrd3jy
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gremmeniella abietina (Lagerb.) M.Morelet",
 "Country is Canada",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 39 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022297-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/csyd-ht46
title: ABD218 pollen surface sample dataset

description: Raw data for the ABD218 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/47m1-vc32
title: LDDsite1366 water chemistry dataset

description: Raw data for the LDDsite1366 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.