cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/nn53dskr7z.2
title: Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures

description: We have developed several autotuning benchmarks in CUDA that take into account performance-relevant source-code parameters and reach near peak-performance on various GPU architectures. We have used them during the development and evaluation of a novel search method for tuning space. With our framework Kernel Tuning Toolkit, freely available at Github, we measured computation times and hardware performance counters on several GPUs for the complete tuning spaces of five benchmarks. These data, which we provide here, might benefit research of search algorithms for the tuning spaces of GPU codes or research of relation between applied code optimization, hardware performance counters, and GPU kernels' performance. Moreover, we provide the scripts we used for robust evaluation of our searcher and comparison to others in detail. In particular, the script that simulates the tuning, i.e., replaces time-demanding compiling and executing the tuned kernels with a quick reading of the computation time from our measured data, makes it possible to inspect the convergence of tuning search over a large number of experiments. These scripts, freely available with our other codes, make it easier to experiment with search algorithms and compare them in a robust way. During our research, we generated models for predicting values of performance counters from values of tuning parameters of our benchmarks. Here, we provide the models themselves and describe the scripts we implemented for their training. These data might benefit researchers who want to reproduce or build on our research. For details on these data, see related article: J. Filipovič, J. Hozzová, A. Nezarat, J. Ol’ha, F. Petrovič, Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures, https://arxiv.org/abs/2102.05299 (2021). For details on the proposed search method using performance counters, see related article: J. Filipovič, J. Hozzová, A. Nezarat, J. Ol’ha, F. Petrovič, Using hardware performance counters to speed up autotuning convergence on GPUs, https://arxiv.org/abs/2102.05297 (2021).
DOI: 10.17632/2ty7bfwvwn.1
title: Thallium Chemical Shift Referencing

description: masShifts200526 and masShifts200527 contain MAS spectra for the determination of isotropic chemical shifts relative to dilute TMS in CDCl3 at several temperatures. CD3OD is used to measure the temperature. Samples of water and TlNO3 under air and TlNO3 under oxygen as well as TMS vapor were measured. The isotropic chemical shift TMS vapor, having low magnetic susceptibility, was combined with measurements at the vertical angle to measure the magnetic susceptibility of TlNO3 solutions. tlno3-200204 contains 1H spectra for various concentrations of TlNO3 solutions compared to TMS in CDCl3 and TMS vapor for use in calculating their magnetic susceptibility. tlno3-200323 contains 2H, 203Tl and 205Tl spectra at two approximate concentrations and at two temperatures to measure the temperature dependence of chemical shift. tlno3-200617 contains 1H and 2D spectra for calibrating 2H chemical shifts. tlno3-200727 contains 2H, 203Tl and 205Tl spectra at different concentrations at a 24.97°C. The first 2H spectrum is for temperature calibration. All the other 2H spectra are followed by a thallium spectrum that is referenced to it.
DOI: 10.17632/dhhhxdy4j7.1
title: The clinical information of patients with squamous cell carcinoma of the penis

description: Squamous cell carcinoma of the penis (SCCP) is the most common type, representing over 90% of the malignant penis cancer. Because of low morbidity and limited sample size, research on the prognostic factors and predictive models of SCCP remain inadequate. Therefore, we extracted data of 1781 patients with SCCP from the SEER database.
DOI: 10.17632/9t3rzckcnj.1
title: Impact Performance of 3D Printed Spatially Varying Elastomeric Lattices

description: Data shows impact performance of spatially graded lattices. Raw data includes video footage, load cell readings, and Instron compression data. Processed data contains files of calculations, figures, graphs, and assembled sets of data.
DOI: 10.17632/pyvnbdsvgc.1
title: Dataset on the acceptance of Islamic microfinance in Kano state, Nigeria

description: The present data from 194 customers of small and medium enterprises (SMEs) tell us about their acceptance of Islamic microfinance in Kano State, Nigeria. The dataset includes variables such as gender, age, marital status, duration as customer, account operate, annual income, type of business, service quality, perceived value, corporate image and religiosity of customers in Kano State. We fielded a survey from March to June 2019, self-administered questionnaires were used for data collection. This data may help scholars to understand how people of Kano State accept Islamic microfinance interacted with service quality, customer perceived value, corporate image and religiosity.
DOI: 10.17632/yzk7xpkxxb.2
title: Supplementary material - Topical Sodium Thiosulfate as treatment of Calcinosis Cutis: A Case Series and Systematic Review

description: Supplementary figures and supplementary tables 1 and 2 for the Journal of the American Academy of Dermatology (JAAD) submission - Topical Sodium Thiosulfate as treatment of Calcinosis Cutis: A Case Series and Systematic Review.
DOI: 10.17632/6p2pb7s583.1
title: TriTOX: A novel Trichomonas vaginalis assay platform for high-throughput screening of compound libraries

description: Supplementary Data Files. Trichomonas vaginalis is a neglected urogenital parasitic protist that causes 170 million cases of trichomoniasis annually, making it the most prevalent non-viral, sexually transmitted disease. Trichomoniasis treatment relies on nitroheterocyclics, such as metronidazole. However, with increasing drug-resistance, there is an urgent need for novel anti-trichomonals. Little progress has been made to translate anti-trichomonal research into commercialised therapeutics, and the absence of a standardised compound-screening platform is the immediate stumbling block for drug-discovery. Herein, we describe a simple, cost-effective growth assay for T. vaginalis and the related Tritrichomonas foetus. Tracking changes in pH were a valid indicator of trichomonad growth (T. vaginalis and T. foetus), allowing development of a miniaturised, chromogenic growth assay based on the phenol red indicator in 96- and 384-well microtiter plate formats. The outputs of this assay can be quantitatively and qualitatively assessed, with consistent dynamic ranges based on Z′ values of 0.741 and 0.870 across medium- and high-throughput formats, respectively. We applied this high-throughput format within the largest pure-compound microbial metabolite screen (812 compounds) for T. vaginalis and identified 43 hit compounds. We compared these identified compounds to mammalian cell lines, and highlighted extensive overlaps between anti-trichomonal and anti-tumour activity. Lastly, observing nanomolar inhibition of T. vaginalis by fumagillin, and noting this compound has reported activity in other protists, we performed in silico analyses of the interaction of fumagillin with its molecular target methionine aminopeptidase 2 for T. vaginalis, Giardia lamblia and Entamoeba histolytica, highlighting potential for fumagillin as a broad-spectrum anti-protistal against microaerophilic protists. Together, this new platform will accelerate drug-discovery efforts, underpin drug-resistance screening in trichomonads, and contributing to a growing body of evidence highlighting the potential of microbial natural products as novel anti-protistals.
DOI: 10.17632/vkz52nv6nv.1
title: BROAD TRANSCRIPTIONAL FIRING REPRESSES BACTERICIDAL ACTIVITY IN HUMAN AIRWAY NEUTROPHILS

description: Neutrophils are often considered terminally differentiated and poised for bacterial killing. In chronic diseases such as cystic fibrosis (CF), an unexplained paradox pits massive neutrophil presence against prolonged bacteria infections. Here, we show that neutrophils recruited to CF airways in vivo and in an in vitro transmigration model display rapid and broad transcriptional firing, leading to an upregulation of survival and anabolic genes, and a downregulation of antimicrobial genes. Newly transcribed RNAs are mirrored by the appearance of corresponding proteins, confirming active translation in these cells. Remarkably, treatment by the RNA polymerase II and III inhibitor -amanitin restored expression of key antimicrobial genes, and increased bactericidal capacity of CF airway neutrophils in vitro and in short-term sputum cultures ex vivo. Broadly, our findings show that neutrophil plasticity is regulated at the terminal organ via RNA and protein synthesis, leading to adaptations that profoundly impact their canonical functions (i.e., bacterial clearance).
DOI: 10.17632/k3j772tmwk.1
title: Multisensory expectations about dynamic visual objects facilitates early sensory processing of congruent sounds

description: In everyday life, the perception of a moving object can lead to the expectation of an object’s sound, yet little is known about how visual expectations influence early auditory processing. We examined how dynamic visual input – an object moving continuously across the visual field – influences early auditory processing of a sound that is either congruent with the object’s motion, and thus likely perceived as being part of the visual object, or incongruent with the object’s motion. In Experiment 1, EEG activity was recorded from 29 adults who passively viewed a ball that appeared either on the far left or right boundary of a display and continuously traversed along the horizontal midline to make contact and elicit a bounce sound off the opposite boundary. Our main analysis focused on the N1 component of the auditory-evoked event-related potential. For audio-visual (AV) trials, a knocking sound accompanied the visual input the moment the ball made contact with the opposite boundary (AV-synchronous), or the sound occurred shortly before contact (AV-asynchronous). We also included audio-only and visual-only trials. For Experiment 1, AV-synchronous sounds elicited an earlier and attenuated auditory N1 response relative to AV-asynchronous or audio-only events. Experiment 2 was conducted to examine the roles of expectancy and multisensory integration in influencing this early auditory response. In addition to the audio-only, AV-synchronous, and AV-asynchronous conditions, 19 adults were shown a ball that became visually occluded prior to reaching the boundary of the display, but elicited an expected knocking sound at the point of occluded collision. Here, the auditory N1 response during the AV-occluded condition resembled the N1 response of the audio-only condition, indicating that multisensory input is essential for altered processing of an auditory stimulus under conditions of synchronous AV expectation. However, additional exploratory analyses of the later P2 component suggest that expectancies have an influence on later auditory processing, pointing to important temporal differences in how multisensory integration and expectation influence audition. Taken together, dynamic visual stimuli can help generate expectations about the timing of auditory events, which then facilitates the processing of auditory information that matches these expectations. The EEG/ERP data attached (.set/.fdt files) were processed in MATLAB using EEGLAB/ERPLAB software. These files can be found in the "Segmented ERP Data" folder. EEG/ERP data were processed using the scripts contained within the "EEG ERP Scripts (MATLAB)" folder. The EEG data were processed using the specifications outlined below. N1 and P2 peak amplitude and latency stats and other relevant data sets are contained within the "Data Sets (Long Format)" folder. Lastly, all statistical analyses were conducted in R, and the scripts used to conduct such analyses can be found in the "R Scripts" folder.
DOI: 10.17632/msxrz7fgmd.1
title: Flexion synergy-muscle spasticity correlation in chronic stroke

description: This is the data set for the paper titled "Perturbation induced electromyographic activity during the expression of the flexion synergy is a sensitive measure of post-stroke motor impairment" submitted to the European Journal of Neurology.
DOI: 10.17632/xj6wxsdspd.2
title: Mainstreaming disaster risk management into land-use planning: trends from Lima

description: Mainstreaming land-use planning into disaster risk management is a vital process for the safeguard and resilience of communities. Since developing countries are most vulnerable due to the strong presence of informal settlements with high level risk exposure to hazards, the research analyzes the periphery of Lima city due to its major indicators in economic and human impacts. For this, the two case studies of Independence and Lurigancho-Chosica municipalities have been analyzed through the lens of disaster risk management integration into land-use planning. The results show that both municipalities have addressed hazard, exposure, and vulnerability and have elaborated land-use planning proposals due to technical and financial support from other organizations. However, they tend not to achieve implementation and monitoring dimensions due to several urban governance issues and the lack of real comprehension of disaster risk management that constitutes the challenges and vulnerabilities. The research concludes with trends and lessons as well as recommendations for Lima and other developing cities with similar patterns of segregation. Therefore, strengthening land-use planning would highly improve urban governance and long-term planning in communities while raising awareness in the disaster risk management approach.
DOI: 10.17632/g5hhnd5bc9.1
title: Data for A conservation genomics workflow to guide practical management actions.

description: 11/02/2021 This archive contains code and data associated with a manuscript: A conservation genomics workflow to guide practical management actions. Note: the code is intended to serve as an archive in association with a published article. You are welcome to contact samantha.yap@rbgsyd.nsw.gov.au about the script or data. It contains the following directories: - code 1OPTGENMIX_data cleaning.R & 2OPTGENMIX.R Implementation of algorithms for performing optimizations Banksia code.R Code used to perform analyses of Banksia Daphnandra code.R Code used to perform analyses of Daphnandra - data / Banksia Report_DBank18-3485_SNP_singlerow.csv genotype data supplied by DArT (Note: data in DArT format, with 0=hom ref; 1=hom alt; 2=het) Vinc_DBank18-3485_meta.xlsx metadata information. / Daphnandra Report-DDap9-4181.xlsx genotype data supplied by DArT Note: samples from different taxa, and not analyzed in this study, removed for this archive. (Note: data in DArT format, with 0=hom ref; 1=hom alt; 2=het) Daphnandra_DDap9-4181_meta.xlsx metadata information.
DOI: 10.5517/ccdc.csd.cc22dsv4
title: CCDC 1918926: Experimental Crystal Structure Determination

description: Related Article: Martyna Ksiądzyna, Anna Gągor, Anna Piecha-Bisiorek, Agnieszka Ciżman, Wojciech Medycki, Ryszard Jakubas|2019|J.Mater.Chem.C|7|10360|doi:10.1039/C9TC02849H
DOI: 10.17632/26pwtf66mh.1
title: Proof of Beal's Conjecture

description: The solve of equation x^p+y^q=z^w ,p,q,w,x,y,z in Z+
DOI: 10.5517/ccdc.csd.cc25kjs2
title: CCDC 2012854: Experimental Crystal Structure Determination

description: Related Article: haitao Yuan|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2609dy
title: CCDC 2026079: Experimental Crystal Structure Determination

description: Related Article: Ulrich Schubert, Rene Kogler, Christine Artner|2020|CSD Communication|||
DOI: 10.17632/z6sxc9b2xx.2
title: Supplementary Data for Effective strategies to reduce pain during platelet-rich plasma scalp injections: A randomized split-scalp study

description: Supplementary Data for Effective strategies to reduce pain during platelet-rich plasma scalp injections: A randomized split-scalp study
DOI: 10.5517/ccdc.csd.cc260dzm
title: CCDC 2026190: Experimental Crystal Structure Determination

description: Related Article: Kun Wu, Ji Zheng, Yong-Liang Huang, Dong Luo, Yan Yan Li, Weigang Lu, Dan Li|2020|J.Mater.Chem.C|8|16974|doi:10.1039/D0TC04154H
DOI: 10.5517/ccdc.csd.cc260yck
title: CCDC 2026698: Experimental Crystal Structure Determination

description: Related Article: Sergely Steephen Bokouende, Aravind B. Kajjam, Cassandra L. Ward, Matthew J. Allen|2020|CSD Communication|||
DOI: 10.17632/cpvj7tvgx4.1
title: Survey Data on the Knowledge, Attitudes and Practices of Nigerians towards the prevention and spread of COVID-19 during the lockdown period in Nigeria

description: This survey collected data on the respondent’s knowledge on COVID-19, their attitude and practices towards the control of the spread of COVID-19 amongst Nigerians. There were 1320 respondents from Nigeria that answered the survey questions. The survey was conducted between March 31 and April 28, 2020 which were within the lockdown period in the country.
DOI: 10.5517/ccdc.csd.cc26gj9j
title: CCDC 2039747: Experimental Crystal Structure Determination

description: Related Article: Rohit Bhowal, Anina Anju Balaraman, Manasi Ghosh, Soma Dutta, Krishna Kishor Dey, Deepak Chopra|2020|J.Am.Chem.Soc.|143|1024|doi:10.1021/jacs.0c11459
DOI: 10.5517/ccdc.csd.cc26mjlz
title: CCDC 2044561: Experimental Crystal Structure Determination

description: Related Article: Bibhuti Bhusan Rath, Gianpiero Gallo, Robert E. Dinnebier, Jagadese J. Vittal|2021|J.Am.Chem.Soc.|143|2088|doi:10.1021/jacs.0c12363
DOI: 10.5517/ccdc.csd.cc26rft7
title: CCDC 2048319: Experimental Crystal Structure Determination

description: Related Article: T. Rekis, A.M. Schaller, S.R. Kotla, A. Schönleber, L. Noohinejad, M. Tolkiehn, C. Paulmann, S. van Smaalen|2021|IUCrJ|8|139|doi:10.1107/S2052252520015912
DOI: 10.5517/ccdc.csd.cc273srx
title: CCDC 2059229: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2749c2
title: CCDC 2059713: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, R.W. Harrington|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2749qf
title: CCDC 2059724: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, R.W. Harrington|2021|CSD Communication|||
DOI: 10.6084/m9.figshare.13794968.v1
title: Raw data for No higher infectivity but immune escape of SARS-CoV-2 501Y.V2 variants

description: The 501Y.V2 variants of SARS-CoV-2 containing multiple mutations in the spike region spread over many countries. Whether their biological characteristics including infectivity and antigenicity have been altered was not clear. In present study, we found that they had no significant increased effect on infectivity to human cell lines and cells overexpressing human ACE2, but increased infectivity in cells overexpressing mouse ACE2 based on the pseudotyped viruses comparing to 614G variant. The susceptibility of 501Y.V2 variants to many neutralizing monoclonal antibodies decreased significantly. These variants also had a significantly reduced effect on the neutralization ability of convalescent and RBD immunized sera. The immune resistances were mainly caused by E484K and N501Y mutations located in RBD. These data suggest that the enhancement of infectivity in mouse cells may lead to the spillover of 501Y.V2 to mouse. The immune resistance of 501Y.V2 may compromise the efficacy of monoclonal antibodies, convalescent sera and vaccines.
DOI: 10.17033/data.00000098
title: A computational protocol to model organophosph(on)ate chemical warfare agents and their simulants (W911NF-15-1-0624)

description: A computational protocol to predict the infrared spectra and binding behavior of organophosph(on)ates was developed. Sarin (GB) was used to benchmark the method through gas phase simulations with progressively more sophisticated models. Computed spectra were compared to examples in the literature and those provided by DSTL. Density functional theory using the EDF2 functional and diffuse 6-311++G** basis set was found to give the closest match. Using the same method and functional the 6-31G (2df, 2p) basis set was found to be superior when hydrated sarin was modelled.
description: Data are .spartan files containing details of molecular structure, properties, etc, computed using Spartan software. The file format is only Spartan readable.
DOI: 10.5281/zenodo.4534418
title: Experiment results

description: This is the database with all experiment results showcased in the paper Teseo and Analysis of Structural Dynamic Graphs.
DOI: 10.5281/zenodo.4534417
title: Experiment results

description: This is the database with all experiment results showcased in the paper Teseo and Analysis of Structural Dynamic Graphs.
DOI: 10.5281/zenodo.4533663
title: Supplementary Information

description: Supplementary Materials for Mesenchymal Stem Cell-Derived Exosomes Protect Trabecular Meshwork from Oxidative Stress
DOI: 10.5281/zenodo.4533662
title: Supplementary Information

description: Supplementary Materials for Mesenchymal Stem Cell-Derived Exosomes Protect Trabecular Meshwork from Oxidative Stress
DOI: 10.15468/7qgz77
title: A new species of Eunice Cuvier, 1817 (Polychaeta: Eunicidae) from the slope of the Desventuradas Islands and seamounts of the Nazca Ridge, southeastern Pacific Ocean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Díaz-Díaz, Oscar Felipe, Rozbaczylo, Nicolás, Sellanes, Javier, Tapia-Guerra, Jan M. (2020): A new species of Eunice Cuvier, 1817 (Polychaeta: Eunicidae) from the slope of the Desventuradas Islands and seamounts of the Nazca Ridge, southeastern Pacific Ocean. Zootaxa 4860 (2): 211-226, DOI: https://doi.org/10.11646/zootaxa.4860.2.4
DOI: 10.15468/674g6n
title: Groehnaltica batophiloides, a new genus and species of flea-beetles (Coleoptera Chrysomelidae) from Baltic amber, described using X-ray microtomography

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bukejs, Andris, Reid, Chris A. M., Biondi, Maurizio (2020): Groehnaltica batophiloides, a new genus and species of flea-beetles (Coleoptera Chrysomelidae) from Baltic amber, described using X-ray microtomography. Zootaxa 4859 (3): 397-408, DOI: https://doi.org/10.11646/zootaxa.4859.3.5
DOI: 10.5285/b0336504-9d7c-4c1f-868c-d212edf42dc9
title: X-ray micro-tomography dataset of Ketton carbonate

description: The images in this dataset are a sample of Ketton carbonate from a micro–computed tomography (micro–CT) scan acquired with a voxel resolution of 4.52 µm. This dataset is part of a study on the effects of Voxel Resolution in a study of flow in porous media. A brief overview of this study summarised from Shah et al 2015 follows. A fundamental understanding of flow in porous media at the pore–scale is necessary to be able to upscale average displacement processes from core to reservoir scale. The study of fluid flow in porous media at the pore–scale consists of two key procedures: Imaging reconstruction of three–dimensional (3D) pore space images; and modelling such as with single and two–phase flow simulations with Lattice–Boltzmann (LB) or Pore–Network (PN) Modelling. Here we analyse pore–scale results to predict petrophysical properties such as porosity, single phase permeability and multi–phase properties at different length scales. The fundamental issue is to understand the image resolution dependency of transport properties, in order to up–scale the flow physics from pore to core scale. Shah, S M, Gray, F, Crawshaw, J P, and Boek, E S. 2015. Micro–Computed Tomography pore–scale study of flow in porous media: Effect of Voxel Resolution. Advances in Water Resources July 2015 doi:10.1016/j.advwatres.2015.07.012