cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/h4jh5khgzy.1
title: X-Ray and CT scan Databases for COVID-19 detection and Retrieval

description: The databases used for Covid-19 detection using Artificial Intelligence and Image analysis. Where it contains two folders, the first one for Classification Task that contains Four databases. The second folder for retrieval task that contains two databases.
DOI: 10.15468/f9n8uq
title: Two Eocene species of peacock mites (Acari: Tetranychoidea: Tuckerellidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sidorchuk, Ekaterina A., Khaustov, Alexander A. (2018): Two Eocene species of peacock mites (Acari: Tetranychoidea: Tuckerellidae). Acarologia 58 (1): 99-115, DOI: 10.24349/acarologia/20184228
DOI: 10.5066/p99l14dn
title: Geospatial Datasets for the Flood-Inundation Study of Little Calumet River from Lansing to South Holland, Illinois, 2020

description: Digital flood-inundation maps for about an 8-mile reach of the Little Calumet River, Illinois, were created by the U.S. Geological Survey (USGS) in cooperation with the U.S. Army Corps of Engineers. The flood-inundation maps, which can be accessed through the USGS Flood Inundation Mapping Program website at https://www.usgs.gov/mission-areas/water-resources/science/flood-inundation-mapping-fim-program, depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at three USGS streamgages: Little Calumet River at South Holland, Illinois (USGS station 05536290); Little Calumet River at Munster, Indiana (USGS station 05536195); and Thorn Creek at Thornton, Illinois (USGS station 05536275). Near-real-time stages at these streamgages may be obtained on the internet from the USGS National Water Information System at https://doi.org/10.5066/F7P55KJN or the National Weather Service (NWS) Advanced Hydrologic Prediction Service at https://water.weather.gov/ahps/, which also forecasts flood hydrographs at this site. Flood profiles were computed for the stream reaches using a one-dimensional unsteady flow step-backwater hydraulic model. The model performance was evaluated using historical streamflow measurements and the most current stage-discharge relations at the USGS streamgages at Little Calumet River at South Holland, Illinois; Little Calumet River at Munster, Indiana; and Thorn Creek at Thornton, Illinois. The model was used to compute 24 water-surface profiles at 1-foot intervals referenced to the streamgage datum and ranging from bankfull to about the 0.2-percent annual-exceedance probability flood (500-year recurrence interval flood). The simulated water-surface profiles were then combined with a geographic information system digital elevation model (derived from light detection and ranging data having a 0.6-foot vertical accuracy and a 2-foot horizontal resolution) to delineate the area flooded at each water level. The availability of these maps, along with internet information regarding current stage from USGS streamgages and forecasted high-flow stages from the NWS, will provide emergency management personnel and residents with information that is critical for flood-response activities such as evacuations and road closures, as well as for postflood recovery efforts.
DOI: 10.21942/uva.13713217.v1
title: Map package (ArcGIS Pro version) with geomorphological and geographical datasets used to generate maps for Au West study area in Vorarlberg, Austria

description: hgfhg
DOI: 10.5066/p9a12el5
title: Abundance of 50 transcripts from microdissected liver samples of smallmouth bass

description: There is an increasing emphasis on effects-based monitoring to document responses associated with exposure to complex mixtures of chemicals, climate change, pathogens, parasites and other environmental stressors in fish populations. For decades aquatic monitoring programs have included the collection of tissues preserved for microscopic pathology. Consequently, formalin-fixed, paraffin-embedded (FFPE) tissue can be an important reservoir of nucleic acids as technologies emerge that utilize molecular endpoints. Despite the cross-linking effects of formalin, its impact on nucleic acid quality and concentration, amplification, and sequencing are not well described. While fresh-frozen tissue is optimal for working with nucleic acids, FFPE samples have been shown to be conducive for molecular studies. Laser capture microdissection (LCM) is one technology which allows for collection of specific regions or cell populations from fresh or preserved specimens with pathological alterations, pathogens, or parasites. In this study, smallmouth bass (Micropterus dolomieu) liver was preserved in three different fixatives, including 10% neutral buffered formalin (NBF), Z-Fix? (ZF), and PAXgene? (PG) for four time periods (24 hr, 48 hr, seven days, and 14 days). Controls consisted of pieces of liver preserved in RNALater? or 95% ethanol. Smallmouth bass were chosen as they are an economically important sportfish and have been utilized as indicators of exposure to endocrine disruptors and other environmental stressors. Small liver sections were cut out with laser microdissection and DNA and RNA were purified and analyzed for nucleic acid concentration and quality. Sanger sequencing and the NanoString nCounter? technology were used to assess the suitability of these samples in downstream molecular techniques. The results revealed that of the formalin fixatives, NBF samples fixed for 24 and 48 hr were superior to ZF samples for both Sanger sequencing and the Nanostring nCounter?. The non-formalin PAXgene? samples were equally successful and they showed greater stability in nucleic acid quality and concentration over longer fixation times. This study demonstrated that small quantities of preserved tissue from smallmouth bass can be utilized in downstream molecular techniques; however, future studies will need to optimize the methods presented here for different tissue types, fish species, and pathological conditions.
DOI: 10.17632/zc67y4m47v.3
title: Analysis of options for treatment of varicose veins

description: Model of options for treatment of varicose veins: spreadsheet model, data from systematic review, and meta-analysis script (STATA)
DOI: 10.17632/87rdb964yc.1
title: LINF_080014100

description: Dpy-30 motif containing protein; Leishmania infantum
DOI: 10.17632/hr9sv8dxxb.1
title: Lu et al 2021, Supplemental Figure S1

description: Supplemental Figure S1 in Phenotypic and genetic effects of season on milk production traits in dairy cattle in the Netherlands
DOI: 10.17632/mm2skm8f6j.2
title: NetLogoR models of butterfly movement

description: This is R code and a prearranged dataset provided for running the IBMs described in 'Behavioural modes in butterflies: their implications for movement and searching behaviour' Link: https://www.sciencedirect.com/science/article/pii/S0003347220302682?casa_token=G-JfoRu4OLEAAAAA:m89mdy1XH8_QCQ71AtKAqg7tzRUJAU2rh4WdfLoylomMDZ60UOJ8TZNUZcjo4zSRTWQcIZQi9g The code is for three different random-walk models: a mode-switching model, a version including intraspecific variation, and another assuming homogeneity between individuals. This was used to explore how different assumptions about behavioural rules for butterflies impact our predictions of their movement rates. The model is built using NetlogoR a translation of the NetLogo's structures and functions for use developing IBMs exclusively in R: https://cran.r-project.org/web/packages/NetLogoR/index.html
DOI: 10.21942/uva.13643189.v12
title: Geomorphology model, input datasets and legend symbology files for use in ArcMap

description: Original model developed in 2016-17 in ArcGIS by Henk Pieter Sterk (www.rfase.org), with minor updates in 2021 by Stacy Shinneman and Henk Pieter Sterk. Model used to generate publication results: Hierarchical geomorphological mapping in mountainous areas Matheus G.G. De Jong, Henk Pieter Sterk, Stacy Shinneman & Arie C. Seijmonsbergen. Submitted to Journal of Maps 2020, revisions made in 2021.<br>This model creates tiers (columns) of geomorphological features (Tier 1, Tier 2 and Tier 3) in the landscape of Vorarlberg, Austria, each with an increasing level of detail. The input dataset needed to create this 'three-tier-legend' is a geomorphological map of Vorarlberg with a Tier 3 category (e.g. 1111, for glacially eroded bedrock). The model then automatically adds Tier 1, Tier 2 and Tier 3 categories based on the Tier 3 code in the 'Geomorph' field. The model replaces the input file with an updated shapefile of the geomorphology of Vorarlberg, now including three tiers of geomorphological features. Python script files and .lyr symbology files are also provided here.
DOI: 10.21942/uva.13693702.v16
title: Geomorphology model, input datasets and legend symbology files for use in ArcGIS Pro

description: Original model developed in 2016-17 in ArcGIS by Henk Pieter Sterk (www.rfase.org), with minor updates in 2021 by Stacy Shinneman and Henk Pieter Sterk. Model used to generate publication results:Hierarchical geomorphological mapping in mountainous areas Matheus G.G. De Jong, Henk Pieter Sterk, Stacy Shinneman & Arie C. Seijmonsbergen. Submitted to Journal of Maps 2020, revisions made in 2021.<br>This model creates tiers (columns) of geomorphological features (Tier 1, Tier 2 and Tier 3) in the landscape of Vorarlberg, Austria, each with an increasing level of detail. The input dataset needed to create this 'three-tier-legend' is a geomorphological map of Vorarlberg with a Tier 3 category (e.g. 1111, for glacially eroded bedrock). The model then automatically adds Tier 1, Tier 2 and Tier 3 categories based on the Tier 3 code in the 'Geomorph' field. The model replaces the input file with an updated shapefile of the geomorphology of Vorarlberg, now including three tiers of geomorphological features. Python script files and .lyr symbology files are also provided here.
DOI: 10.5287/bodleian:nb2m6ypmw
title: Hedgerow Surveys at Ditchley Park, Oxfordshire, UK, 2015
DOI: 10.15468/yprzu7
title: A new species of Maraenobiotus (Copepoda, Harpacticoida) from Lena River Delta (North-Eastern Siberia)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Novikov, Aleksandr, Sharafutdinova, Dayana (2020): A new species of Maraenobiotus (Copepoda, Harpacticoida) from Lena River Delta (North-Eastern Siberia). Zootaxa 4852 (2): 177-190, DOI: https://doi.org/10.11646/zootaxa.4852.2.3
DOI: 10.17632/hn3nv7wxpk.2
title: Code for audio-video parameter extraction and statistical tests related to mosquito response to opposite-sex sound-stimuli

description: Mosquito sound and flight-position synchronization / postprocessing / parameter-extraction codes (Matlab); Statistics data and analysis files with figure plot (R)
DOI: 10.25318/71m0001x-eng
title: Labour Force Survey: Public Use Microdata File

description: This public use microdata file (PUMF) contains non-aggregated data for a wide variety of variables collected from the Labour Force Survey (LFS). The LFS collects monthly information on the labour market activities of Canada's working age population. This product is for users who prefer to do their own analysis by focusing on specific subgroups in the population or by cross-classifying variables that are not in our catalogued products.

This is a monthly file, and is available going back to 1976.
DOI: 10.17632/vnzpzcw224.1
title: MOCHA-Nutrients-Fisicaro et al-raw data

description: Background: recently, the interest in the role of coffee intake on the occurrence and course of age-related neurological and neuropsychiatric disorders has provided inconclusive effect. Moreover, no study has evaluated the mocha coffee consumption in subjects with mild vascular cognitive impairment and late-onset depression. Methods: we assessed the association between different quantities of mocha coffee intake over the last year and cognitive and mood performance in a homogeneous sample of 300 non-demented elderly Italian subjects with subcortical ischemic vas-cular disease. Mini Mental State Examination (MMSE), Stroop Color-Word Interference test (Stroop T), 17-items Hamilton Depression Rating Scale (HDRS), Activities of Daily Living (ADL), and Instrumental ADL were the outcome measures. Results: MMSE, HDRS, and Stroop T were independently and significantly associated with coffee consumption, i.e., better scores with increasing intake. At the post-hoc analyses it was found that the group with a moderate intake (2 cups/day) had similar values compared to the heavily drinkers (≥3 cups/day), with the exception of MMSE. Conclusions: daily mocha coffee intake was associated with higher cognitive and mood status, with a significant dose-response association even with a moderate consumption. This might have translational implications for the identification of modifiable factors for vascular dementia and geriatric depression.
DOI: 10.17632/w4zp96ww8s.1
title: Data for: Kumasasa (Sasa senanensis) leaf extract metabolomic analysis by CE-TOFMS and LC-TOFMS.

description: This dataset consists of metabolomic analysis results of compounds name and relative area law data from the Kumasasa (Sasa senanensis) leaf extract. The Kumasasa (Sasa senanensis) plant belongs to the Gramineae family (Graminaeae) and the genus Sasa (Sasa). It is widely distributed throughout the northern part of Japan. The metabolomic analysis such as qualitative comprehensive analysis was performed on substances that had the same peak intensity as the components added in advance as internal standard substances (1,200 substances in the annotation list) via CE-TOFMS and LC-TOFMS.
DOI: 10.17632/2yz3w5d4ff.1
title: Childhood psychological maltreatment and social anxiety: the mediation roles of neuroticism and positive coping style

description: This data contains four variables: childhood psychological maltreatment, social anxiety, personality, coping style
DOI: 10.5066/f74x55zp
title: Cholinesterase inhibition in butterflies on the National Key Deer Refuge following aerial application of a mosquito control pesticide

description: The data set contains raw data for pesticide (naled) residues on samplers collected after aerial applications over the National Key Deer Refuge in the Florida Keys, and biological response (cholinesterase activity in butterflies and mosquito mortality) for organisms co-located with the residue samplers.
DOI: 10.5066/p972f9ln
title: 10 Year Data for biocrust cover after fire management treatments

description: The data reflect surveys from 10-year sampling frames established as part of the Sagebrush Steppe Treatment Evaluation Project. The project tests fuel reduction treatments on the lichen and moss components of biocrusts across the sagebrush steppe.
DOI: 10.5066/p9x5f4b1
title: Data for the Evaluation of the U.S. Geological Survey Streamgage Network in South Carolina, 2017

description: This dataset contains an inventory of South Carolina U.S. Geological Survey (USGS) streamgages evaluated in 2017 as part of gage network gap assessment. Both continuous record and crest stage gages are included in this dataset. The data are grouped into three categories: rural streamgages with equal to or greater than 10 years of peak-flow data, rural streamgages with less than 10 years of peak-flow data, and urban streamgages.
DOI: 10.6084/m9.figshare.13643252
title: MedSeg Liver segments dataset

description: In total 50 cases segmented with liver segments 1-8.Free to use and download. <br>Check out our 5 segment model at www.medseg.ai<br>All cases obtained Decathlon's dataset, see details and reference here: https://arxiv.org/abs/1902.09063<br><br>Segmentations done by MedSeg<br>#Update 2/4/21: 40 new cases added, case 1 replaced with new case
DOI: 10.17632/3nff493kdd.2
title: DNA_vaccine_SPDv_Salmon

description: Viremia and qPCR data.
DOI: 10.5066/p90j7s7t
title: Necropsy reference number and summary collection information for Washington state population of northern sea otters examined during 1989-2010

description: Morbillivirus epidemics in marine mammals first gained prominence in 1988 when an outbreak of phocine distemper virus (PDV) occurred in European harbor seals (Phoca vitulina vitulina). Prior to 2001, all serosurveys for morbilliviruses in sea otters (Enhydra lutris) in California, Washington and Alaska documented a 0% seroprevalence. The first published serodetections of morbillivirus in sea otters occurred in 2001?2002 in live-captured Washington sea otters with a documented 80% seroprevalence. We conducted a retrospective study of sea otter cases from 1989?2010 compiled at the U.S. Geological Survey?s National Wildlife Health Center to identify cases of morbilliviral disease in Washington sea otters, and to characterize the disease using immunohistochemistry, RT-PCR, genetic sequencing, virus isolation and serology. We identified six cases of morbilliviral disease and 12 of morbilliviral infection in this population of sea otters during 2000?2010. Significant histologic findings included inflammation in the white and gray matter of the brain characterized by lymphoplasmacytic perivascular cuffing, neuronal necrosis and satellitosis in gray matter and spongiosis, myelin degeneration, spheroids, and gemistocytes in white matter. Intranuclear and intracytoplasmic viral inclusion bodies were found in neurons, Purkinje cells and glia. Immunohistochemistry for canine distemper virus (CDV) showed positive staining in neurons, glial cells and cell processes. A pan-morbillivirus RT-PCR with subsequent restriction endonuclease digestion or sequencing identified canine distemper virus. Virus isolation was not successful. Two otters with morbilliviral encephalitis showed greater antibody titers to CDV than PDV. Histologic changes were confined to the central nervous system and resembled neurologic canine distemper in domestic dogs. Cases of otters with morbilliviral infection without histologic changes could represent early infections or incompletely cleared sublethal infections. Our findings indicate that morbillivirus was present in the Washington sea otter population as early as 2000 and provides a description of the pathology of canine distemper in sea otters.
DOI: 10.17632/b23fzm6ccy.2
title: Table listing all applications of hydrological models in Switzerland

description: Table listing all applications of hydrological models in Switzerland. This Excel document was produced for the paper "Why do we have so many different hydrological models? A review based on the case of Switzerland" submitted to Wires Water.
DOI: 10.17632/52zyny39yy.2
title: Data on the effects of COVID-19 pandemic on people’s expectations about their future

description: Dataset obtained from an online survey conducted during the lockdown in Italy (April 2020) investigating psychological and socio-economic variables related to the COVID-19 emergency.
DOI: 10.5066/p9ntlg30
title: Burrowing behavior of freshwater mussels

description: Data include burrowing behavior of juvenile freshwater mussels (Lampsilis siliquoidea); Villosa constricta; Megalonaias nervosa; Villosa iris; Lampsilis powellii; and Anodonta oregonensis) in three types of sediment [a sand/silt/clay mixture (49 percent sand) with a total organic carbon (TOC) content of about 3 percent obtained from northeastern Minnesota, a predominantly fine sand (82 percent sand) with a TOC content of about 1 percent obtained from southwest Missouri, and a coarse commercial sand with a diameter of less than 0.5 mm (Granusil, number 4030)].
DOI: 10.5066/p9vhgrdd
title: Least tern and piping plover responses to the 2011 Missouri River flood: Nest, chick, and adult datasets

description: This data release includes nest, chick, and adult survival data that were analyzed to evaluate effects of the 2011 Missouri River flood on endangered least terns and threatened piping plovers.
DOI: 10.5066/p93l2wm1
title: Stormwater-quality data in the control and test catchments during the calibration and treatment phase of a leaf collection study in Madison, Fond du Lac, and Oshkosh, WI, from September 2016 through November 2019

description: The data set contains phosphorus and nitrogen concentrations and loads measured as part of a study to determine if, and by how much, removing leaves and other organic detritus from streets, through municipal leaf collection and street cleaning programs, could reduce nutrient contributions to local water bodies. Stormwater runoff was sampled in paired, medium-density, residential catchments during the fall. One catchment was established as a control in which there was no effort to remove leaf litter and other organic detritus from streets. The second catchment served as the test catchment in which removal of leaf litter was done through a combination of municipal leaf collection and street cleaning on a weekly or biweekly schedule. These data are interpreted in a USGS Scientific Investigation Report.
DOI: 10.5066/p96r5q0m
title: Environmental DNA (eDNA) is an Effective Tool to Track Recolonizing Migratory Fish Following Large-Scale Dam Removal, field data

description: We collected environmental DNA (eDNA) data from the Elwha River, home to the world?s largest dam removal project, to track the spatial and temporal patterns of species responses following dam removal. In total, we collected data for 11 different fish taxa, sampled at 25 sites ranging across 56 river kilometers in a wilderness river for 4 years following dam removal. We show that eDNA can effectively be used to determine whether fish have recolonized past former dams, and in some cases determine the spatial extent of that recolonization.