cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27998393.v1
title: 表 S1-15.xlsx

description: 在全球变化下，山地河流生态系统面临生物多样性丧失和食物网结构改变的双重威胁，但由于传统方法的限制，系统理解仍然有限。本研究采用 eDNA 技术，结合网络分析和结构方程建模 （SEM），在 30 个采样点 （ST 10、TB 9、XS 11） 中调查了 3 条典型秦岭山河流 （石头江-ST、太白河-TB、徐水河-XS 上游） 的生物多样性-食物网结构关系。主要发现包括：（1） 三个营养级生物群表现出不同的空间分布模式：鱼类群落表现出显着的河间差异 （χ² = 8.626，P = 0.013），无脊椎动物表现出最高的 β 多样性 （0.858 ± 0.084），初级生产者表现出相对较弱的空间分化 （R² = 0.161，P = 0.039）;（2） 食物网表现出高度组织化的拓扑结构：稳定的连接性 （0.287-0.293），通过高聚类系数 （0.711-0.714） 和显著的模块化特性 （modularity=0.116） 保持网络稳定性;（3） 基于节点重要性的物种去除实验表明，大约 37% 的关键物种（主要是高度连接的中间消费者）的损失将引发显着的网络结构变化;（4） 结构方程模型表明初级生产者多样性通过直接和间接途径影响食物网结构（总效应 β = 1.438，p &lt; 0.05），表明显着的自下而上的调节。值得注意的是，该研究在当地食物网中检测到入侵的 Oncorhynchus mykiss，表现出高营养水平 （4.1） 和网络连接性，可能影响本地物种，特别是通过与国家二级受保护的 Brachymystax tsinlingensis 的潜在竞争。本研究不仅揭示了维持山地河流生态系统多样性和网络稳定性的关键机制，也为基于食物网的生态系统管理提供了理论依据。此外，它证实了 eDNA 技术在复杂生态网络研究中的应用潜力。
DOI: 10.6084/m9.figshare.27998393.v2
title: Table S1-15.xlsx

description: Subsidiary Review Annex
DOI: 10.6084/m9.figshare.24828637
title: Proteomic analysis by 4D label-free MS-PRM identified that Nptx1, Ptpmt1, Slc25a11, and Cpt1c are involved in diabetes-associated cognitive dysfunction

description: Diabetes-associated cognitive dysfunction (DACD) is a chronic ailment that exerts a substantial influence on the overall well-being of individuals. The hippocampus assumes a pivotal role in the progression and sustenance of cognitive impairment. The identification of differentially expressed proteins (DEPs) in the hippocampus is crucial for understanding the mechanisms of DACD. A rat model of DACD was established by a high-fat diet combined with streptozotocin intraperitoneal injection. The Morris water maze (MWM), hematoxylin and eosin (H&E) staining, Nissl staining, and transmission electron microscope (TEM) were performed on the rats. The proteins expressed in the hippocampus were detected using 4D label-free quantitative proteomics. Four DEPs, namely Nptx1, Ptpmt1, Slc25a11, and Cpt1c, were validated using parallel reaction monitoring (PRM). Our study found that hippocampal lesions were present in the DACD rat models. There were 59 up-regulated and 98 down-regulated DEPs in the Model group compared to the Control group. We found that the levels of Nptx1, Ptpmt1, Slc25a11, and Cpt1c were elevated in the Model group, which are important for cell mitochondrial function. It should be noted that in our study, we only used PRM to validate the expression of these proteins. However, more evidence is needed to establish the relationship between these protein changes and DACD. Our research results may provide further insight into the molecular pathology of hippocampal injury in DACD. In addition, further studies and clinical trials are required to confirm our findings and establish a more conclusive molecular mechanism for DACD.
DOI: 10.6084/m9.figshare.24828637.v1
title: Proteomic analysis by 4D label-free MS-PRM identified that Nptx1, Ptpmt1, Slc25a11, and Cpt1c are involved in diabetes-associated cognitive dysfunction

description: Diabetes-associated cognitive dysfunction (DACD) is a chronic ailment that exerts a substantial influence on the overall well-being of individuals. The hippocampus assumes a pivotal role in the progression and sustenance of cognitive impairment. The identification of differentially expressed proteins (DEPs) in the hippocampus is crucial for understanding the mechanisms of DACD. A rat model of DACD was established by a high-fat diet combined with streptozotocin intraperitoneal injection. The Morris water maze (MWM), hematoxylin and eosin (H&E) staining, Nissl staining, and transmission electron microscope (TEM) were performed on the rats. The proteins expressed in the hippocampus were detected using 4D label-free quantitative proteomics. Four DEPs, namely Nptx1, Ptpmt1, Slc25a11, and Cpt1c, were validated using parallel reaction monitoring (PRM). Our study found that hippocampal lesions were present in the DACD rat models. There were 59 up-regulated and 98 down-regulated DEPs in the Model group compared to the Control group. We found that the levels of Nptx1, Ptpmt1, Slc25a11, and Cpt1c were elevated in the Model group, which are important for cell mitochondrial function. It should be noted that in our study, we only used PRM to validate the expression of these proteins. However, more evidence is needed to establish the relationship between these protein changes and DACD. Our research results may provide further insight into the molecular pathology of hippocampal injury in DACD. In addition, further studies and clinical trials are required to confirm our findings and establish a more conclusive molecular mechanism for DACD.
DOI: 10.6084/m9.figshare.24320996
title: Localisation of eloquent cortex using magnetoencephalography and its clinical implications

description: This study aimed to localise the eloquent cortex and measure evoked field (EF) parameters using magnetoencephalography in patients with epilepsy and tumours near the eloquent cortex. A total of 41 patients (26 with drug-refractory epilepsy and 15 with tumours), with a mean age of 33 years, were recruited. Visual evoked field (VEF), auditory evoked field (AEF), sensory evoked field (SSEF), and motor-evoked field (MEF) latencies, amplitudes, and localisation were compared with those of a control population. Subgroup analyses were performed based on lobar involvement. Evoked Field parameters on the affected side were compared with those on the opposite side. The effect of distance from the lesion on nearby and distant evoked fields was evaluated. AEF and VEF amplitudes and latencies were reduced bilaterally (<i>p</i> &lt; 0.05). Amplitude in the ipsilateral SSEF was reduced by 29.27% and 2.16% in the AEF group compared to the contralateral side (<i>p</i> = 0.02). In patients with temporal lobe lesions, the SSEF amplitude was reduced bilaterally (<i>p</i> &lt; 0.02), and latency was prolonged compared with controls. The MEF amplitude was reduced and latency was prolonged in patients with frontal lobe lesions (<i>p</i> = 0.01). EF displacement was 32%, 57%, 21%, and 16% for AEF, MEF, VEF, and SSEF respectively. Patients in the epilepsy group had distant EF abnormalities. EF amplitude was reduced and latency was prolonged in the involved hemisphere. Distant EF amplitudes were more affected than latencies in epilepsy. Amplitude and distance from the lesion had negative correlation for all EF. EF changes indicated eloquent cortical displacement which may not be apparent on MRI.
DOI: 10.6084/m9.figshare.24320996.v1
title: Localisation of eloquent cortex using magnetoencephalography and its clinical implications

description: This study aimed to localise the eloquent cortex and measure evoked field (EF) parameters using magnetoencephalography in patients with epilepsy and tumours near the eloquent cortex. A total of 41 patients (26 with drug-refractory epilepsy and 15 with tumours), with a mean age of 33 years, were recruited. Visual evoked field (VEF), auditory evoked field (AEF), sensory evoked field (SSEF), and motor-evoked field (MEF) latencies, amplitudes, and localisation were compared with those of a control population. Subgroup analyses were performed based on lobar involvement. Evoked Field parameters on the affected side were compared with those on the opposite side. The effect of distance from the lesion on nearby and distant evoked fields was evaluated. AEF and VEF amplitudes and latencies were reduced bilaterally (<i>p</i> &lt; 0.05). Amplitude in the ipsilateral SSEF was reduced by 29.27% and 2.16% in the AEF group compared to the contralateral side (<i>p</i> = 0.02). In patients with temporal lobe lesions, the SSEF amplitude was reduced bilaterally (<i>p</i> &lt; 0.02), and latency was prolonged compared with controls. The MEF amplitude was reduced and latency was prolonged in patients with frontal lobe lesions (<i>p</i> = 0.01). EF displacement was 32%, 57%, 21%, and 16% for AEF, MEF, VEF, and SSEF respectively. Patients in the epilepsy group had distant EF abnormalities. EF amplitude was reduced and latency was prolonged in the involved hemisphere. Distant EF amplitudes were more affected than latencies in epilepsy. Amplitude and distance from the lesion had negative correlation for all EF. EF changes indicated eloquent cortical displacement which may not be apparent on MRI.
DOI: 10.6084/m9.figshare.25145502
title: Low expression of GRM4 is associated with poor prognosis and tumor immune infiltration in glioma

description: The metabotropic glutamate receptor 4 (mGlu4, GRM4) exhibits significant expression within the central nervous system (CNS) and has been implicated to be correlated with a poor prognosis. This study was aimed to elucidate the relationship between the expression profile of GRM4 and the prognosis of glioma patients. RNA-sequencing datasets from The Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO), and China Glioma Genome Atlas (CGGA) repositories were used to evaluate the potential relationship. The value of clinical prognostic about GRM4 was assessed using clinical survival data from CGGA and TCGA. The GEPIA database was used to select genes like GRM4. PPI network was constructed by the database of (STRING), GO and KEGG analyses were performed. TargetScan, TarBase, miRDB, and starBase were used to explore miRNAs that could regulate GRM4 expression. EWAS Data Hub, MethSurv, and MEXPRESS were used for the analysis and relationship between DNA methylation and GRM4 expression and prognosis in glioma. TIMER2.0 and CAMOIP databases were used to assess the association between immune cell infiltration and GRM4. Human GBM cell lines were used to validate the function of GRM4. Our study shows that GRM4 is under expressed among gliomas and accompanied by poorer OS. Multivariate analysis showed that low mRNA expression of GRM4 was an independent factor of prognostic for shorter OS in all glioma patients. MiR-1262 affects the malignant phenotype of gliomas through GRM4. Methylation of DNA plays an important role in the instruction of GRM4 expression, the methylation level of GRM4 in glioma tissue is higher in comparison to normal tissue, and the higher methylation level was accompanied with the worse prognosis. Further analysis showed that <i>GRM4</i> mRNA expression in GBM linked negatively with common lymphoid progenitor, Macrophage M1, Macrophage, and T cell CD4<sup>+</sup> Th2, but not with the tumor purity. Overexpression of GRM4 prevents the migration of human GBM cell lines in vitro. GRM4 may have a substantial impact on the infiltration of immune cells and serve as a valuable prognostic biomarker in gliomas.
DOI: 10.6084/m9.figshare.25145502.v1
title: Low expression of GRM4 is associated with poor prognosis and tumor immune infiltration in glioma

description: The metabotropic glutamate receptor 4 (mGlu4, GRM4) exhibits significant expression within the central nervous system (CNS) and has been implicated to be correlated with a poor prognosis. This study was aimed to elucidate the relationship between the expression profile of GRM4 and the prognosis of glioma patients. RNA-sequencing datasets from The Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO), and China Glioma Genome Atlas (CGGA) repositories were used to evaluate the potential relationship. The value of clinical prognostic about GRM4 was assessed using clinical survival data from CGGA and TCGA. The GEPIA database was used to select genes like GRM4. PPI network was constructed by the database of (STRING), GO and KEGG analyses were performed. TargetScan, TarBase, miRDB, and starBase were used to explore miRNAs that could regulate GRM4 expression. EWAS Data Hub, MethSurv, and MEXPRESS were used for the analysis and relationship between DNA methylation and GRM4 expression and prognosis in glioma. TIMER2.0 and CAMOIP databases were used to assess the association between immune cell infiltration and GRM4. Human GBM cell lines were used to validate the function of GRM4. Our study shows that GRM4 is under expressed among gliomas and accompanied by poorer OS. Multivariate analysis showed that low mRNA expression of GRM4 was an independent factor of prognostic for shorter OS in all glioma patients. MiR-1262 affects the malignant phenotype of gliomas through GRM4. Methylation of DNA plays an important role in the instruction of GRM4 expression, the methylation level of GRM4 in glioma tissue is higher in comparison to normal tissue, and the higher methylation level was accompanied with the worse prognosis. Further analysis showed that <i>GRM4</i> mRNA expression in GBM linked negatively with common lymphoid progenitor, Macrophage M1, Macrophage, and T cell CD4<sup>+</sup> Th2, but not with the tumor purity. Overexpression of GRM4 prevents the migration of human GBM cell lines in vitro. GRM4 may have a substantial impact on the infiltration of immune cells and serve as a valuable prognostic biomarker in gliomas.
DOI: 10.15468/dl.rysfck
title: Occurrence Download

description: A dataset containing 4585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Uzbekistan, Kyrgyzstan, Kazakhstan)",
 "TaxonKey is Iris Tourn. ex L."
 ]
}

 The dataset includes 4585 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027542-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etwdu8
title: Occurrence Download

description: A dataset containing 479 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centrochelys sulcata (Miller, 1779)"
 ]
}

 The dataset includes 479 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027543-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dn6ayu
title: Occurrence Download

description: A dataset containing 127483 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is North America",
 "Country is one of (United States of America, Canada, Mexico)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Colletidae"
 ]
}

 The dataset includes 127483 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027539-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kegvzz
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Sympetrum gilvum (Selys, 1884)"
 ]
}

 The dataset includes 83 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027544-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ks3a7m
title: Occurrence Download

description: A dataset containing 912813 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON(((-73.52173632485567 45.52215949798093,-73.5227363362285 45.53095261813046,-73.52615850798057 45.53943958316191,-73.53187230470193 45.54729404862621,-73.53965883001605 45.554213859813444,-73.54921913423593 45.55993271085345,-73.56018565929433 45.56423043686046,-73.57213638795295 45.566941534714765,-73.58461114998289 45.567961575837906,-73.59712944522988 45.56725125644138,-73.60920907734841 45.564837923887396,-73.62038485628077 45.56081451805208,-73.63022662436548 45.55533596956269,-73.63835589049117 45.54861319796659,-73.64446041727285 45.54090494785104,-73.6483061943745 45.53250778560138,-73.64974634196174 45.52374465036426,-73.64872661596314 45.514952407133514,-73.64528732495148 45.506468885804885,-73.63956161058425 45.49861990655704,-73.63177018359445 45.49170678887555,-73.62221273991335 45.48599481960615,-73.61125640212636 45.48170311594668,-73.59932163655657 45.478996264166895,-73.58686618319445 45.47797804641652,-73.57436760261598 45.478687488890934,-73.56230508977785 45.481097377732105,-73.55114122847802 45.48511529734013,-73.54130436202932 45.49058715231845,-73.53317223532208 45.49730304214727,-73.52705752124817 45.50500526992526,-73.52319578107102 45.51339818611125,-73.52173632485567 45.52215949798093)))"
 ]
}

 The dataset includes 912813 records from 217 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027540-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnz9du
title: Occurrence Download

description: A dataset containing 3287 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herpetofauna, avifauna y plantas de Puerto Salgar, Caparrapí, Guaduas y Quebradanegra (Cundinamarca)"
 ]
}

 The dataset includes 3287 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027545-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34943/04a2a872-c522-4551-8148-0b39e5e45729
title: ODP 1364A Hydrophone Deployed 2020-09-14

description: The Ocean Sonics icListen HF Hydrophone 6013 was deployed on 2020-09-14 at ODP 1364A. ODP 1364A is a location at Clayoquot Slope. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/ab15b102-c737-4add-8ecf-f8db27aefeb8
title: ODP 1364A Hydrophone Deployed 2020-09-14

description: The Ocean Sonics icListen HF Hydrophone 6013 was deployed on 2020-09-14 at ODP 1364A. ODP 1364A is a location at Clayoquot Slope. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/9d17b5d1-30e7-463f-b9a9-5f3e022a2782
title: ODP 1364A Hydrophone Deployed 2020-09-14

description: The Ocean Sonics icListen HF Hydrophone 6014 was deployed on 2020-09-14 at ODP 1364A. ODP 1364A is a location at Clayoquot Slope. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/444217ce-da9a-48dc-89ef-238f42a5a9fe
title: ODP 1364A Hydrophone Deployed 2020-09-14

description: The Ocean Sonics icListen HF Hydrophone 6014 was deployed on 2020-09-14 at ODP 1364A. ODP 1364A is a location at Clayoquot Slope. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.15468/dl.u7d35j
title: Occurrence Download

description: A dataset containing 64750 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Huperzia selago (L.) Bernh. ex Schrank & Mart."
 ]
}

 The dataset includes 64750 records from 516 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027547-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qe26mk
title: Occurrence Download

description: A dataset containing 7398 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lycopodium alpinum L."
 ]
}

 The dataset includes 7398 records from 271 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027548-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m4zr4e
title: Occurrence Download

description: A dataset containing 1407 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella sibirica (Milde) Hieron."
 ]
}

 The dataset includes 1407 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027549-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34943/628883cf-2017-48a2-83c0-ef1cd3ae27b5
title: ODP 1364A Hydrophone Deployed 2020-09-14

description: The Ocean Sonics icListen HF Hydrophone 6015 was deployed on 2020-09-14 at ODP 1364A. ODP 1364A is a location at Clayoquot Slope. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/a7537ef7-4150-4642-b1c9-732e97005b0e
title: ODP 1364A Hydrophone Deployed 2020-09-14

description: The Ocean Sonics icListen HF Hydrophone 6015 was deployed on 2020-09-14 at ODP 1364A. ODP 1364A is a location at Clayoquot Slope. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.