cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11937606
title: Additional file 1 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017

description: Additional file 1: Tabular data. Metadata of included genomes. Additional file 1 reports the sample name, organism name, source of isolation, isolation year, country of isolation, sequence type (ST) for each of the included genomes. Origin details whether the genome was derived from the ENGAGE consortium, from Enterobase/GenBank/RefSeq database. Summary metrics (total sequences, GC%, total length, number of contigs, N50, number of CDS) are also reported. Supplementary Table 1 (“S_Napoli genomes” sheet) details info for S. Napoli collected isolates, Supplementary Table 2 (“Other serovar genomes” sheet) details info for the downloaded reference genomes belonging to Clade A.
DOI: 10.6084/m9.figshare.11937606.v1
title: Additional file 1 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017

description: Additional file 1: Tabular data. Metadata of included genomes. Additional file 1 reports the sample name, organism name, source of isolation, isolation year, country of isolation, sequence type (ST) for each of the included genomes. Origin details whether the genome was derived from the ENGAGE consortium, from Enterobase/GenBank/RefSeq database. Summary metrics (total sequences, GC%, total length, number of contigs, N50, number of CDS) are also reported. Supplementary Table 1 (“S_Napoli genomes” sheet) details info for S. Napoli collected isolates, Supplementary Table 2 (“Other serovar genomes” sheet) details info for the downloaded reference genomes belonging to Clade A.
DOI: 10.6084/m9.figshare.11937597
title: Additional file 15 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005â€“2017

description: Additional file 15 Tabular data. Prophage hit description. Number of intact/incomplete/questionable prophages and their name, for each sample. In addition, serotype, ST and subclade (for S. Napoli genomes only) metadata are reported to ease data investigation.
DOI: 10.6084/m9.figshare.11937597.v1
title: Additional file 15 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005â€“2017

description: Additional file 15 Tabular data. Prophage hit description. Number of intact/incomplete/questionable prophages and their name, for each sample. In addition, serotype, ST and subclade (for S. Napoli genomes only) metadata are reported to ease data investigation.
DOI: 10.6084/m9.figshare.11937585
title: Additional file 13 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017

description: Additional file 13: Tabular data. COG characterization of unshared/shared genes between typhoidal/non typhoidal genomes and Napoli genomes. Additional file 12 contains the genes found in S. Napoli genomes only, in typhoidal serovar genomes only, in non-typhoidal serovars genome only as well as genes shared by S. Napoli genomes and typhoidal serovar genomes or genes shared by S. Napoli genomes and non-typhoidal serovar genomes. Each gene is characterized by the gene name, the description of its annotation, the number of genomes it was found in, the COG ID number, the COG category, its name and description, as well as the protein ID identified by Prokka, the gene length in aa, the Uniprot Best match and the associated GO terms. Genes annotated as “Hypotetical protein” are filtered from the default view.
DOI: 10.6084/m9.figshare.11937585.v1
title: Additional file 13 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017

description: Additional file 13: Tabular data. COG characterization of unshared/shared genes between typhoidal/non typhoidal genomes and Napoli genomes. Additional file 12 contains the genes found in S. Napoli genomes only, in typhoidal serovar genomes only, in non-typhoidal serovars genome only as well as genes shared by S. Napoli genomes and typhoidal serovar genomes or genes shared by S. Napoli genomes and non-typhoidal serovar genomes. Each gene is characterized by the gene name, the description of its annotation, the number of genomes it was found in, the COG ID number, the COG category, its name and description, as well as the protein ID identified by Prokka, the gene length in aa, the Uniprot Best match and the associated GO terms. Genes annotated as “Hypotetical protein” are filtered from the default view.
DOI: 10.6084/m9.figshare.11937579
title: Additional file 12 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005â€“2017

description: Additional file 12: Tabular data. Top GO hits. Additional file 11 reports the top 10 enriched GO terms, detailed for each of the three GO categories, for both S. Napoli genomes only vs the whole dataset.
DOI: 10.6084/m9.figshare.11937567
title: Additional file 10 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017

description: Additional file 10 Tabular data. BacMet hits description. Additional file 9 summarizes the BacMet genes identified in the investigated genomes in terms of: gene name, corresponding BacMet ID, gene product, gene family, targeted biocide or metal compound, gene description, presence in the core BacMet (i.e. shared by ≥90% of samples), presence in the core of S. Napoli, S. Typhi and S. Paratyphi A subgroup, presence in the core of the non-typhoidal Salmonella subgroup, presence in at least two samples of S. Napoli, S. Typhi and S. Paratyphi A subgroup, presence in at least two samples of the non-typhoidal Salmonella subgroup.
DOI: 10.6084/m9.figshare.11937579.v1
title: Additional file 12 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005â€“2017

description: Additional file 12: Tabular data. Top GO hits. Additional file 11 reports the top 10 enriched GO terms, detailed for each of the three GO categories, for both S. Napoli genomes only vs the whole dataset.
DOI: 10.6084/m9.figshare.11937567.v1
title: Additional file 10 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017

description: Additional file 10 Tabular data. BacMet hits description. Additional file 9 summarizes the BacMet genes identified in the investigated genomes in terms of: gene name, corresponding BacMet ID, gene product, gene family, targeted biocide or metal compound, gene description, presence in the core BacMet (i.e. shared by ≥90% of samples), presence in the core of S. Napoli, S. Typhi and S. Paratyphi A subgroup, presence in the core of the non-typhoidal Salmonella subgroup, presence in at least two samples of S. Napoli, S. Typhi and S. Paratyphi A subgroup, presence in at least two samples of the non-typhoidal Salmonella subgroup.
DOI: 10.6084/m9.figshare.11937519
title: Additional file 2 of Animal sources for zoonotic transmission of psittacosis: a systematic review

description: Additional file 2. Strength of evidence tool.
DOI: 10.6084/m9.figshare.11937519.v1
title: Additional file 2 of Animal sources for zoonotic transmission of psittacosis: a systematic review

description: Additional file 2. Strength of evidence tool.
DOI: 10.6084/m9.figshare.11937510
title: Additional file 1 of Animal sources for zoonotic transmission of psittacosis: a systematic review

description: Additional file 1. Characteristics of 80 included studies.
DOI: 10.6084/m9.figshare.11937510.v1
title: Additional file 1 of Animal sources for zoonotic transmission of psittacosis: a systematic review

description: Additional file 1. Characteristics of 80 included studies.
DOI: 10.6084/m9.figshare.11937417
title: Additional file 1 of Experienced complaints, activity limitations and loss of motor capacities in patients with pure hereditary spastic paraplegia: a web-based survey in the Netherlands

description: Additional file 1. Appendix 1. Overview of variables and answers.
DOI: 10.6084/m9.figshare.11937417.v1
title: Additional file 1 of Experienced complaints, activity limitations and loss of motor capacities in patients with pure hereditary spastic paraplegia: a web-based survey in the Netherlands

description: Additional file 1. Appendix 1. Overview of variables and answers.
DOI: 10.6084/m9.figshare.11937369
title: Additional file 1 of Berries, greens, and medicinal herbs—mapping and assessing wild plants as an ecosystem service in Transylvania (Romania)

description: Additional file 1: Table S1. The species, amount and monetary value of plant parts collected in the study area. Table S2. Description of the skill levels required for occupations and the ratios of choosing wild food.
DOI: 10.6084/m9.figshare.11937369.v1
title: Additional file 1 of Berries, greens, and medicinal herbs—mapping and assessing wild plants as an ecosystem service in Transylvania (Romania)

description: Additional file 1: Table S1. The species, amount and monetary value of plant parts collected in the study area. Table S2. Description of the skill levels required for occupations and the ratios of choosing wild food.
DOI: 10.6084/m9.figshare.11937348
title: Additional file 2 of Transcriptome and metabolite analyses provide insights into zigzag-shaped stem formation in tea plants (Camellia sinensis)

description: Additional file 2: Table S1 Summary of the RNA-Seq data derived from MZ, QQ, and LYQQ. Table S2 Statistics of the number of detected genes in each cultivar.
DOI: 10.6084/m9.figshare.11937348.v1
title: Additional file 2 of Transcriptome and metabolite analyses provide insights into zigzag-shaped stem formation in tea plants (Camellia sinensis)

description: Additional file 2: Table S1 Summary of the RNA-Seq data derived from MZ, QQ, and LYQQ. Table S2 Statistics of the number of detected genes in each cultivar.
DOI: 10.6084/m9.figshare.11937342
title: Additional file 1 of Transcriptome and metabolite analyses provide insights into zigzag-shaped stem formation in tea plants (Camellia sinensis)

description: Additional file 1: Figure S1 Growth architectures of MZ (a and d), QQ (b and e) and LYQQ (c and f) in a natural tea garden. The shoots of QQ and LYQQ exhibit a zigzag shape. Figure S2 Stem morphology (a) and inter-node length (b) analysis of MZ, LYQQ and QQ. Mature stems were collected on February 2020. The length of the inter-node between the third and fourth nodes (red lines) was determined (n = 5). ** indicates a significant difference at the 0.01 level. Figure S3 GO enrichment analysis of DEGs identified from the comparisons MZ-vs-QQ (a), MZ-vs-LYQQ (b), and QQ-vs-LYQQ (c). Figure S4 KEGG enrichment analysis of DEGs identified from the comparisons MZ-vs-LYQQ_MZ-vs-QQ _QQ-vs-LYQQ (a), MZ-vs-LYQQ (b), MZ-vs-QQ (c) and QQ-vs-LYQQ (d). Figure S5. Differential metabolites identified from MZ-vs-QQ, MZ-vs-LYQQ, and QQ-vs-LYQQ.
DOI: 10.6084/m9.figshare.11937342.v1
title: Additional file 1 of Transcriptome and metabolite analyses provide insights into zigzag-shaped stem formation in tea plants (Camellia sinensis)

description: Additional file 1: Figure S1 Growth architectures of MZ (a and d), QQ (b and e) and LYQQ (c and f) in a natural tea garden. The shoots of QQ and LYQQ exhibit a zigzag shape. Figure S2 Stem morphology (a) and inter-node length (b) analysis of MZ, LYQQ and QQ. Mature stems were collected on February 2020. The length of the inter-node between the third and fourth nodes (red lines) was determined (n = 5). ** indicates a significant difference at the 0.01 level. Figure S3 GO enrichment analysis of DEGs identified from the comparisons MZ-vs-QQ (a), MZ-vs-LYQQ (b), and QQ-vs-LYQQ (c). Figure S4 KEGG enrichment analysis of DEGs identified from the comparisons MZ-vs-LYQQ_MZ-vs-QQ _QQ-vs-LYQQ (a), MZ-vs-LYQQ (b), MZ-vs-QQ (c) and QQ-vs-LYQQ (d). Figure S5. Differential metabolites identified from MZ-vs-QQ, MZ-vs-LYQQ, and QQ-vs-LYQQ.
DOI: 10.6084/m9.figshare.11937297
title: Additional file 5 of Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells

description: Table S1. This additional table contains mouse hiBiv and loBiv genomic coordinates, strand and neighbouring gene.
DOI: 10.6084/m9.figshare.11937297.v1
title: Additional file 5 of Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells

description: Table S1. This additional table contains mouse hiBiv and loBiv genomic coordinates, strand and neighbouring gene.
DOI: 10.6084/m9.figshare.11937273
title: Additional file 17 of Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells

description: Table S3. This additional table contains datasets re-analysed in this manuscript. File format.
DOI: 10.6084/m9.figshare.11937273.v1
title: Additional file 17 of Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells

description: Table S3. This additional table contains datasets re-analysed in this manuscript. File format.
DOI: 10.6084/m9.figshare.11937228
title: Additional file 10 of Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells

description: Table S2. This additional table contains: human hiBiv and loBiv genomic coordinates, strand and neighbouring gene.
DOI: 10.6084/m9.figshare.11937228.v1
title: Additional file 10 of Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells

description: Table S2. This additional table contains: human hiBiv and loBiv genomic coordinates, strand and neighbouring gene.
DOI: 10.6084/m9.figshare.11936979
title: Additional file 1 of Genome-wide analysis of MicroRNA-messenger RNA interactome in ex-vivo gill filaments, Anguilla japonica

description: Additional file 1: Table S1. Clean read stats: Small RNA sequencing statistic; Table S2. Primer sequence for RT-PCR: List of primer used for Real-time PCR analysis. Table S3. mRNA seq-4 h hyper: List of DEGs identified in eel gill filament culture under 4 h hypertonic stress treatment. Table S4. mRNAseq-8 h hyper: List of DEGs in eel gill filament culture under 8 h hypertonic stress treatment. Table S5. mRNAseq-miR-29b inhibition. List of upregulated genes in primary gill cell culture, after miR-29b-3p inhibition. Table S6. mRNAseq-miR-200b inhibition: List of upregulated genes in primary gill cell culture, after miR-200b-3p inhibition.
DOI: 10.6084/m9.figshare.11936979.v1
title: Additional file 1 of Genome-wide analysis of MicroRNA-messenger RNA interactome in ex-vivo gill filaments, Anguilla japonica

description: Additional file 1: Table S1. Clean read stats: Small RNA sequencing statistic; Table S2. Primer sequence for RT-PCR: List of primer used for Real-time PCR analysis. Table S3. mRNA seq-4 h hyper: List of DEGs identified in eel gill filament culture under 4 h hypertonic stress treatment. Table S4. mRNAseq-8 h hyper: List of DEGs in eel gill filament culture under 8 h hypertonic stress treatment. Table S5. mRNAseq-miR-29b inhibition. List of upregulated genes in primary gill cell culture, after miR-29b-3p inhibition. Table S6. mRNAseq-miR-200b inhibition: List of upregulated genes in primary gill cell culture, after miR-200b-3p inhibition.
DOI: 10.6084/m9.figshare.11936970
title: Additional file 5 of Dealing with spatial misalignment to model the relationship between deprivation and life expectancy: a model-based geostatistical approach

description: Additional file 5.Â The readme file that provides that guides on how to reproduce the anaylysis.
DOI: 10.6084/m9.figshare.11936970.v1
title: Additional file 5 of Dealing with spatial misalignment to model the relationship between deprivation and life expectancy: a model-based geostatistical approach

description: Additional file 5.Â The readme file that provides that guides on how to reproduce the anaylysis.
DOI: 10.6084/m9.figshare.11936964
title: Additional file 4 of Dealing with spatial misalignment to model the relationship between deprivation and life expectancy: a model-based geostatistical approach

description: Additional file 4.Â The index of multiple deprivation data.
DOI: 10.6084/m9.figshare.11936958
title: Additional file 3 of Dealing with spatial misalignment to model the relationship between deprivation and life expectancy: a model-based geostatistical approach

description: Additional file 3.Â The life expectancy at birth data.
DOI: 10.6084/m9.figshare.11936964.v1
title: Additional file 4 of Dealing with spatial misalignment to model the relationship between deprivation and life expectancy: a model-based geostatistical approach

description: Additional file 4.Â The index of multiple deprivation data.
DOI: 10.6084/m9.figshare.11936958.v1
title: Additional file 3 of Dealing with spatial misalignment to model the relationship between deprivation and life expectancy: a model-based geostatistical approach

description: Additional file 3.Â The life expectancy at birth data.
DOI: 10.6084/m9.figshare.11936952
title: Additional file 2 of Dealing with spatial misalignment to model the relationship between deprivation and life expectancy: a model-based geostatistical approach

description: Additional file 2.Â The R script to reproduce the analysis.
DOI: 10.6084/m9.figshare.11936952.v1
title: Additional file 2 of Dealing with spatial misalignment to model the relationship between deprivation and life expectancy: a model-based geostatistical approach

description: Additional file 2.Â The R script to reproduce the analysis.
DOI: 10.6084/m9.figshare.11936892
title: Additional file 2 of Glutaminase-1 (GLS1) inhibition limits metastatic progression in osteosarcoma

description: Additional file 2: Table S1. Differentially regulated metabolites displayed in the volcano plot. Metabolites ID together with their FC, p-values, its FDRcorrected version and Log are also displayed as well as the main metabolic pathway in which they are involved.
DOI: 10.6084/m9.figshare.11936892.v1
title: Additional file 2 of Glutaminase-1 (GLS1) inhibition limits metastatic progression in osteosarcoma

description: Additional file 2: Table S1. Differentially regulated metabolites displayed in the volcano plot. Metabolites ID together with their FC, p-values, its FDRcorrected version and Log are also displayed as well as the main metabolic pathway in which they are involved.
DOI: 10.6084/m9.figshare.11936862
title: Additional file 7 of Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

description: Additional file 7: Table S21. Comparison with previous dog CNV studies.
DOI: 10.6084/m9.figshare.11936862.v1
title: Additional file 7 of Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

description: Additional file 7: Table S21. Comparison with previous dog CNV studies.
DOI: 10.6084/m9.figshare.11936853
title: Additional file 5 of Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

description: Additional file 5: Table S19. The total number of CNVRs.
DOI: 10.6084/m9.figshare.11936853.v1
title: Additional file 5 of Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

description: Additional file 5: Table S19. The total number of CNVRs.
DOI: 10.6084/m9.figshare.11936856
title: Additional file 6 of Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

description: Additional file 6: Table S20. Statistics of the detected CNVs for Canine autosomes and X chromosome.
DOI: 10.6084/m9.figshare.11936856.v1
title: Additional file 6 of Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

description: Additional file 6: Table S20. Statistics of the detected CNVs for Canine autosomes and X chromosome.
DOI: 10.6084/m9.figshare.11936841
title: Additional file 3 of Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

description: Additional file 3: Table S17. Genomic structural variants including insertions, tandem duplication, deletions, translocations (inter and intra chromosomal) and inversions for three wolves.
DOI: 10.6084/m9.figshare.11936841.v1
title: Additional file 3 of Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

description: Additional file 3: Table S17. Genomic structural variants including insertions, tandem duplication, deletions, translocations (inter and intra chromosomal) and inversions for three wolves.
DOI: 10.6084/m9.figshare.11936847
title: Additional file 4 of Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

description: Additional file 4: Table S18. The total number of deletions and inversions in dog and wolf genomes.
DOI: 10.6084/m9.figshare.11936847.v1
title: Additional file 4 of Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

description: Additional file 4: Table S18. The total number of deletions and inversions in dog and wolf genomes.
DOI: 10.6084/m9.figshare.11936835
title: Additional file 2 of Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

description: Additional file 2: Table S16. Genomic structural variants including insertions, tandem duplication, deletions, translocations (inter and intra chromosomal) and inversions for three dogs.
DOI: 10.5281/zenodo.3998892
title: Data for "Constraints on dark matter-nucleon effective couplings and halo substructures in DEAP-3600"

description: Repository with information for reproducing the results of the paper "Constraints on dark matter-nucleon effective couplings in the presence of kinematically distinct halo substructures using the DEAP-3600 detector" on behalf of DEAP-3600 collaboration. <pre>arXiv:2005.14667 [astro-ph.CO] </pre>
DOI: 10.6084/m9.figshare.11936835.v1
title: Additional file 2 of Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

description: Additional file 2: Table S16. Genomic structural variants including insertions, tandem duplication, deletions, translocations (inter and intra chromosomal) and inversions for three dogs.
DOI: 10.6084/m9.figshare.11936793
title: data_AM2

description: This is the data repository for the manuscript: "Relative roles of energy and momentum fluxes in the tropical response to extratropical thermal forcing", submitted to AMS.<br>Data are designed to be read and plotted via MATLAB.<br>The required data files (.mat) and code (.m) for each figure are located in the corresponding directories.<br>Outputted figures are saved in 'svgfile' directory.<br><br>please see README in the file for more info.<br>
DOI: 10.6084/m9.figshare.11936790
title: Modelling of compaction trends of anisotropic elastic properties of shales

description: This dataset includes modelling scripts (MATLAB) and experimental data.The main script is Main_Compaction_Clay.m
DOI: 10.6084/m9.figshare.11936610
title: Dual voltage-calcium optical mapping in cardiac slice of Sham C57 murine

description: Raw data of dual voltage-calcium optical mapping in cardiac slice of Sham C57 murine. The heart was transectioned into 300-µm thick slices from apex to base. 15 slices were collected from slice1 (apex) to slice 15 (base). We recorded Vm and CaT signals at 2-, 4-, 8- ,and 16- Hz pacing; the interval was 3.0 ms and the voltage was 15 V.
DOI: 10.6084/m9.figshare.11936607
title: PCV data set.xlsx

description: Data set on Prevalence of Polypoidal choroidal vasculopathy