cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26861667.v2
title: Palynological characterization of a diverse desertic ecosystem: the Peruvian <i>Lomas</i>

description: The Pacific coastal Peruvian landscapes are dominated by desert and dry-forest biomes, which have undergone shifts in extent and floral composition in response to Plio–Pleistocene climatic fluctuations. Within this context, the coastal <i>Lomas</i> develop as seasonal vegetation patches, renowned for their high endemism, rich floral diversity, and essential ecosystem services. Despite growing within the desert biome, the <i>Lomas</i> exhibit characteristic elements and vegetation structure typical of a dry-forest biome, evidencing an active species migration between xeric biomes. However, assessing the historical evolution of this arid flora and, by extension, the coastal desert landscape, presents challenges. The scarcity of continental sedimentary records and a lack of extended and well-described palynological references impede these efforts. In response to this, our study offers a thorough morphological review of the <i>Lomas</i> palynoflora, encompassing over 194 genera from 76 families, representing approximately 80% of the known <i>Lomas</i> flora. Our review includes at least one species per reviewed genus, featuring 37 palynomorphs from endemic species (18.5% of the studied flora). This palynological characterization is intended to serve as accessible reference material for investigating the historical and long-term evolution of the coastal dry flora. Furthermore, these findings facilitate the analysis of honeys and bee floral foraging patterns, as well as the study of animal–plant or human–plant interactions from middens and archaeological remains.
DOI: 10.6084/m9.figshare.26212881
title: The Cretaceous to Eocene: a biostratigraphical review and a new detailed palynostratigraphy of Greenland and adjacent areas

description: This paper compiles and correlates for the first time Cretaceous to Eocene palynostratigraphies across the Arctic. It focuses on Greenland and adjacent areas, including the Labrador–Baffin Seaway, onshore Nuussuaq Basin in central West Greenland, onshore southern East Greenland, central East Greenland, North-East Greenland, eastern North Greenland and the Danmarkshavn Basin, but also extends to the Canadian Arctic Archipelago and the Barents Sea region offshore Norway. The paper compiles data from more than three decades of detailed Arctic palynological analyses, based mainly on dinoflagellate cysts. It gives a historical overview of the Cretaceous to Paleogene palaeontological studies of Greenland and presents an overview of 85 palynological intervals and numerous bioevents. The palynological assemblages from the Labrador–Baffin Seaway, Nuussuaq Basin and north-east Baffin Bay reflect the opening of the Labrador–Baffin Seaway, from a brackish to freshwater environment in a large embayment in the Early Cretaceous to an open marine seaway in the Late Cretaceous. Assemblages reveal dinoflagellate cyst provincialism between the opening stages of the Labrador–Baffin Seaway and the already opened Greenland–Norwegian–Barents seaway. The Upper Cretaceous global Oceanic Anoxic Event 2 (OAE2) spanning the Cenomanian/Turonian boundary is recognised from Arctic Canada, north-east Baffin Bay, Nuussuaq Basin in central West Greenland, and North-East Greenland, and is mapped and correlated based on dinoflagellate cyst stratigraphy and carbon isotope (δ<sup>13</sup>C<sub>org</sub>) curves. The dinoflagellate cyst assemblages of the Cretaceous/Paleogene boundary are correlated from the Labrador Sea across to the Nuussuaq Basin in central West Greenland; in both areas the earliest Danian palynological assemblage is represented by incoming warm-water species. The presence of the global Paleocene–Eocene Thermal Maximum (PETM) in the Paleogene successions in North-East Greenland and in exploration wells in the Labrador–Baffin Seaway is indicated by the incoming of the warm-water dinoflagellate cyst species <i>Axiodinium augustum</i>.
DOI: 10.6084/m9.figshare.26394235.v2
title: Palynology of the Jurassic–Cretaceous transition, Surat Basin, Australia

description: This paper presents, for the Queensland portion of the Rhaetian – Early Cretaceous Surat Basin, the results of a taxonomic-descriptive study of 89 palynological samples collected from three boreholes that intersected the succession containing the Gubberamunda Sandstone and the succeeding Orallo Formation, as well as the upper Westbourne Formation and the lower Mooga Sandstone, which respectively underlie and overlie this succession. This upper Westbourne Formation – lower Mooga Sandstone interval represents the most complete Late Jurassic – Early Cretaceous sedimentary succession in Queensland. It was sampled from: GSQ DRD 26, GSQ Roma 2 and GSQ Dalby 1, respectively located in the western, central, and eastern parts of the basin. The samples yielded a diverse palynoflora in which 212 taxa were identified, embracing both <i>in-situ</i> and reworked (latest Carboniferous – Early Jurassic) spores and pollen, as well as palynomorphs of algal, fungal, acritarch and unknown affinities. Formally included in this work is the previously unpublished taxonomy of McKellar, largely from the immediately preceding part of the Surat Basin succession, as its taxonomic nomenclature is critical to the current compilation. Herewith proposed (from both the current work and that of McKellar) are 27 new species, two new genera, 22 new combinations, ten emendations, the elevation of one subgenus to generic status, and the renaming of one species. From a biostratigraphic perspective, palynofloras from the upper Westbourne Formation and the lower Gubberamunda Sandstone are assigned to the informally defined ‘<i>Retitriletes watherooensis</i> association zone’, and palynofloras from the upper Gubberamunda Sandstone, Orallo Formation and lower Mooga Sandstone, to the <i>Ruffordiaspora australiensis</i> Interval Zone. The upper Westbourne Formation – lower Mooga Sandstone interval was deposited in lacustrine, floodplain and backswamp facies, with a flora that remained relatively stable, there being no major floristic turnover; it consisted of diverse ferns, conifers, lycopods, bryophytes, seed ferns, and a variety of ginkgoes, cycads, and/or gnetales. Humid, warm-temperate conditions are indicated by the flora’s climatic signature.
DOI: 10.6084/m9.figshare.26212881.v2
title: The Cretaceous to Eocene: a biostratigraphical review and a new detailed palynostratigraphy of Greenland and adjacent areas

description: This paper compiles and correlates for the first time Cretaceous to Eocene palynostratigraphies across the Arctic. It focuses on Greenland and adjacent areas, including the Labrador–Baffin Seaway, onshore Nuussuaq Basin in central West Greenland, onshore southern East Greenland, central East Greenland, North-East Greenland, eastern North Greenland and the Danmarkshavn Basin, but also extends to the Canadian Arctic Archipelago and the Barents Sea region offshore Norway. The paper compiles data from more than three decades of detailed Arctic palynological analyses, based mainly on dinoflagellate cysts. It gives a historical overview of the Cretaceous to Paleogene palaeontological studies of Greenland and presents an overview of 85 palynological intervals and numerous bioevents. The palynological assemblages from the Labrador–Baffin Seaway, Nuussuaq Basin and north-east Baffin Bay reflect the opening of the Labrador–Baffin Seaway, from a brackish to freshwater environment in a large embayment in the Early Cretaceous to an open marine seaway in the Late Cretaceous. Assemblages reveal dinoflagellate cyst provincialism between the opening stages of the Labrador–Baffin Seaway and the already opened Greenland–Norwegian–Barents seaway. The Upper Cretaceous global Oceanic Anoxic Event 2 (OAE2) spanning the Cenomanian/Turonian boundary is recognised from Arctic Canada, north-east Baffin Bay, Nuussuaq Basin in central West Greenland, and North-East Greenland, and is mapped and correlated based on dinoflagellate cyst stratigraphy and carbon isotope (δ<sup>13</sup>C<sub>org</sub>) curves. The dinoflagellate cyst assemblages of the Cretaceous/Paleogene boundary are correlated from the Labrador Sea across to the Nuussuaq Basin in central West Greenland; in both areas the earliest Danian palynological assemblage is represented by incoming warm-water species. The presence of the global Paleocene–Eocene Thermal Maximum (PETM) in the Paleogene successions in North-East Greenland and in exploration wells in the Labrador–Baffin Seaway is indicated by the incoming of the warm-water dinoflagellate cyst species <i>Axiodinium augustum</i>.
DOI: 10.6084/m9.figshare.26394235
title: Palynology of the Jurassic–Cretaceous transition, Surat Basin, Australia

description: This paper presents, for the Queensland portion of the Rhaetian – Early Cretaceous Surat Basin, the results of a taxonomic-descriptive study of 89 palynological samples collected from three boreholes that intersected the succession containing the Gubberamunda Sandstone and the succeeding Orallo Formation, as well as the upper Westbourne Formation and the lower Mooga Sandstone, which respectively underlie and overlie this succession. This upper Westbourne Formation – lower Mooga Sandstone interval represents the most complete Late Jurassic – Early Cretaceous sedimentary succession in Queensland. It was sampled from: GSQ DRD 26, GSQ Roma 2 and GSQ Dalby 1, respectively located in the western, central, and eastern parts of the basin. The samples yielded a diverse palynoflora in which 212 taxa were identified, embracing both <i>in-situ</i> and reworked (latest Carboniferous – Early Jurassic) spores and pollen, as well as palynomorphs of algal, fungal, acritarch and unknown affinities. Formally included in this work is the previously unpublished taxonomy of McKellar, largely from the immediately preceding part of the Surat Basin succession, as its taxonomic nomenclature is critical to the current compilation. Herewith proposed (from both the current work and that of McKellar) are 27 new species, two new genera, 22 new combinations, ten emendations, the elevation of one subgenus to generic status, and the renaming of one species. From a biostratigraphic perspective, palynofloras from the upper Westbourne Formation and the lower Gubberamunda Sandstone are assigned to the informally defined ‘<i>Retitriletes watherooensis</i> association zone’, and palynofloras from the upper Gubberamunda Sandstone, Orallo Formation and lower Mooga Sandstone, to the <i>Ruffordiaspora australiensis</i> Interval Zone. The upper Westbourne Formation – lower Mooga Sandstone interval was deposited in lacustrine, floodplain and backswamp facies, with a flora that remained relatively stable, there being no major floristic turnover; it consisted of diverse ferns, conifers, lycopods, bryophytes, seed ferns, and a variety of ginkgoes, cycads, and/or gnetales. Humid, warm-temperate conditions are indicated by the flora’s climatic signature.
DOI: 10.6084/m9.figshare.26394235.v1
title: Palynology of the Jurassic–Cretaceous transition, Surat Basin, Australia

description: This paper presents, for the Queensland portion of the Rhaetian – Early Cretaceous Surat Basin, the results of a taxonomic-descriptive study of 89 palynological samples collected from three boreholes that intersected the succession containing the Gubberamunda Sandstone and the succeeding Orallo Formation, as well as the upper Westbourne Formation and the lower Mooga Sandstone, which respectively underlie and overlie this succession. This upper Westbourne Formation – lower Mooga Sandstone interval represents the most complete Late Jurassic – Early Cretaceous sedimentary succession in Queensland. It was sampled from: GSQ DRD 26, GSQ Roma 2 and GSQ Dalby 1, respectively located in the western, central, and eastern parts of the basin. The samples yielded a diverse palynoflora in which 212 taxa were identified, embracing both <i>in-situ</i> and reworked (latest Carboniferous – Early Jurassic) spores and pollen, as well as palynomorphs of algal, fungal, acritarch and unknown affinities. Formally included in this work is the previously unpublished taxonomy of McKellar, largely from the immediately preceding part of the Surat Basin succession, as its taxonomic nomenclature is critical to the current compilation. Herewith proposed (from both the current work and that of McKellar) are 27 new species, two new genera, 22 new combinations, ten emendations, the elevation of one subgenus to generic status, and the renaming of one species. From a biostratigraphic perspective, palynofloras from the upper Westbourne Formation and the lower Gubberamunda Sandstone are assigned to the informally defined ‘<i>Retitriletes watherooensis</i> association zone’, and palynofloras from the upper Gubberamunda Sandstone, Orallo Formation and lower Mooga Sandstone, to the <i>Ruffordiaspora australiensis</i> Interval Zone. The upper Westbourne Formation – lower Mooga Sandstone interval was deposited in lacustrine, floodplain and backswamp facies, with a flora that remained relatively stable, there being no major floristic turnover; it consisted of diverse ferns, conifers, lycopods, bryophytes, seed ferns, and a variety of ginkgoes, cycads, and/or gnetales. Humid, warm-temperate conditions are indicated by the flora’s climatic signature.
DOI: 10.6084/m9.figshare.26861667.v1
title: Palynological characterization of a diverse desertic ecosystem: The Peruvian <i>Lomas</i>

description: The Pacific coastal Peruvian landscapes are dominated by desert and dry-forest biomes, which have undergone shifts in extent and floral composition in response to Plio-Pleistocene climatic fluctuations. Within this context, the coastal <i>Lomas</i> develop as seasonal vegetation patches, renowned for their high endemism, rich floral diversity, and essential ecosystem services. Despite growing within the desert biome, the <i>Lomas</i> exhibit characteristic elements and vegetation structure typical of a dry-forest biome, evidencing an active species migration between xeric biomes. However, assessing the historical evolution of this arid flora and, by extension, the coastal desert landscape, presents challenges. The scarcity of continental sedimentary records and a lack of extended and well-described palynological references impede these efforts. In response to this, our study offers a thorough morphological review of the <i>Lomas</i> palynoflora, encompassing over 194 genera from 76 families, representing approximately 80% of the known <i>Lomas</i> flora. Our review includes at least one species per reviewed genus, featuring 37 palynomorphs from endemic species (18.5% of the studied flora). This palynological characterization aims to serve as accessible reference material for investigating the historical and long-term evolution of the coastal dry flora. Furthermore, these findings facilitate the analysis of honeys and bee floral foraging patterns, as well as the study of animal-plant or human-plant interactions from middens and archaeological remains.
DOI: 10.5281/zenodo.14270756
title: Virtually The Same or Realistically Different: Do Real-World Robots Differ From Their Non-Physical Representations? :: Data and Code ::

description: Data and Code Used to Produce: Virtually The Same or Realistically Different: Do Real-World Robots Differ From Their Non-Physical Representations?

Full Paper Published Open Acess on ACM Digital Library
DOI: 10.25573/data.24512719
title: Plant Communities of high-Andean “bofedal” wetlands across a trans–Andean transect in southern Peru

description: Yearly (2017-2019) plot-based vegetation surveys along a trans-Andean transect in high-Andean wetlands in souther Peru (Huancavelida and Ayacucho departments) used for differentiating vegetation types.
DOI: 10.25573/data.24512719.v1
title: Plant Communities of high-Andean “bofedal” wetlands across a trans–Andean transect in southern Peru

description: Yearly (2017-2019) plot-based vegetation surveys along a trans-Andean transect in high-Andean wetlands in souther Peru (Huancavelida and Ayacucho departments) used for differentiating vegetation types.
DOI: 10.5281/zenodo.14537662
title: Maize Reference Assemblies for Satellite Evolution Analysis

description: We created 13 genome assemblies of maize and teosinte for a comparative analysis of satellite DNA evolution using PacBio HiFi data.

For each assembly, high-confidence HiFi contigs were generated using HiFiasm (v 0.19.6) with homozygous settings with end-joining disabled (--write-ec --write-paf -u0 -l0). High confidence contigs (>1/2 expected read depth) were then scaffolded using the T2T Mo17 assembly (Chen et al., 2023 https://doi.org/10.1038/s41588-023-01419-6) using RagTag (v2.0.1) (Alonge et al., 2023 https://doi.org/10.1186/s13059-022-02823-7). Scaffolded assemblies were annotated with Liftoff (v1.6.3) twice, once using gene annotations from Mo17 T2T as the reference and once using the gapless B73 AB10 as reference (Liu et al., 2020 https://doi.org/10.1186/s13059-020-02029-9 ). Assemblies contain only chromosomes.

The B73 AB10 assembly was generated using the same high molecular weight DNA used in a prior publication (Liu et al., 2020 https://doi.org/10.1186/s13059-020-02029-9 ). HiFi reads accessible via NCBI [INSERT REFERENCE NUMBER]

The B73 assembly was generated using reads from SRR11606869 (Hon et al., 2020 https://doi.org/10.1038/s41597-020-00743-4).

The Mo17 assembly was generated using from reads from PRJNA751841 (Chen et al., 2023 https://doi.org/10.1038/s41588-023-01419-6).

CG44, CG119, CG108, Tx777, and Tx779 assemblies were generated using reads from PRJEB59044. These genomes were sequenced as part of the Genomes to Fields Project, with seeds sourced from the Germplasm Resources Information Network (GRIN).

K64 and CML44 assemblies were generated fusing reads from PRJEB66502 collected from the Buckler lab at Cornell University and funded by the Bill and Melinda Gates Foundation. 

TIL01, TIL11, and TIL25 were generated using reads from  PanAnd data (PRJEB50280).
DOI: 10.5281/zenodo.14537663
title: Maize Reference Assemblies for Satellite Evolution Analysis

description: We created 13 genome assemblies of maize and teosinte for a comparative analysis of satellite DNA evolution using PacBio HiFi data.

For each assembly, high-confidence HiFi contigs were generated using HiFiasm (v 0.19.6) with homozygous settings with end-joining disabled (--write-ec --write-paf -u0 -l0). High confidence contigs (>1/2 expected read depth) were then scaffolded using the T2T Mo17 assembly (Chen et al., 2023 https://doi.org/10.1038/s41588-023-01419-6) using RagTag (v2.0.1) (Alonge et al., 2023 https://doi.org/10.1186/s13059-022-02823-7). Scaffolded assemblies were annotated with Liftoff (v1.6.3) twice, once using gene annotations from Mo17 T2T as the reference and once using the gapless B73 AB10 as reference (Liu et al., 2020 https://doi.org/10.1186/s13059-020-02029-9 ). Assemblies contain only chromosomes.

The B73 AB10 assembly was generated using the same high molecular weight DNA used in a prior publication (Liu et al., 2020 https://doi.org/10.1186/s13059-020-02029-9 ). HiFi reads accessible via NCBI [INSERT REFERENCE NUMBER]

The B73 assembly was generated using reads from SRR11606869 (Hon et al., 2020 https://doi.org/10.1038/s41597-020-00743-4).

The Mo17 assembly was generated using from reads from PRJNA751841 (Chen et al., 2023 https://doi.org/10.1038/s41588-023-01419-6).

CG44, CG119, CG108, Tx777, and Tx779 assemblies were generated using reads from PRJEB59044. These genomes were sequenced as part of the Genomes to Fields Project, with seeds sourced from the Germplasm Resources Information Network (GRIN).

K64 and CML44 assemblies were generated fusing reads from PRJEB66502 collected from the Buckler lab at Cornell University and funded by the Bill and Melinda Gates Foundation. 

TIL01, TIL11, and TIL25 were generated using reads from  PanAnd data (PRJEB50280).
DOI: 10.15468/dl.tufnv7
title: Occurrence Download

description: A dataset containing 8451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((31.8883 12.88291,44.11238 12.88291,44.11238 30.1847,31.8883 30.1847,31.8883 12.88291))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY 4.0, CC0 1.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Chlorophyta"
 ]
}

 The dataset includes 8451 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052349-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9m5300x
title: Digital data for the geologic map of Scoggins Dam, Henry Hagg Lake, and Scoggins Valley, Washington County, Oregon

description: Scoggins Dam in northwest Oregon lies within the Gales Creek fault zone (GCF), a northwest-striking system of active faults forming the boundary between the Coast Range and the Tualatin Valley about 25 km east of Portland, Oregon. Geologic mapping published in 2020 shows the dam to lie within a block-faulted releasing stepover between the right-lateral, NW-striking Scoggins Creek and Parsons Creek strands of the GCF. The Scoggins Creek strand is presently mapped beneath the existing dam about 200 m north of the south abutment. Preliminary results from paleoseismic trenching by the U.S. Bureau of Reclamation, Portland State University, and the U.S. Geological Survey indicate that these two major fault strands have had multiple surface rupturing earthquakes in the Holocene. To confirm the accuracy of the 2020 geologic map and the geometry of the GCF in the releasing stepover region, we completed additional geologic mapping of the dam, reservoir, and an alternative dam site downstream between July 2018 and May 2020. Using high-resolution lidar topographic data and satellite imagery on handheld digital tablets, we collected data at ~500 field sites in the heavily forested terrain. We used these detailed field observations to locate and digitally map the main Scoggins Creek and Parsons Creek fault strands, as well as the cross faults linking the two main strands, to produce an improved and more detailed geologic map and cross sections of Scoggins Valley and its existing and proposed dam sites.
DOI: 10.15468/dl.ufmckb
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is da86174a-a605-43a4-a5e8-53d484152cd3",
 "TaxonKey is Citrus ×aurantium L."
 ]
}

 The dataset includes 20 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052350-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9pvk0q3
title: Data Release for Luminescence: Geologic map of Scoggins Dam, Henry Hagg Lake, and the Scoggins Valley area, Washington County, Oregon

description: The Bureau of Reclamation's Scoggins Dam lies within the Gales Creek fault zone southwest of Hillsboro, Oregon. Recent geologic mapping shows the dam to overlie a potentially active strand of the fault. This report describes the geology of the dam in detail and confirms that the dam overlies a strand of the Gales Creek fault. The report documents small faults in the reservoir and off the north end of the dam along the Parsons Creek strand of the fault. The report further documents the geology of an alternative dam site downstream of the existing dam.