cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7syu4z
title: Occurrence Download

description: A dataset containing 1469457 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bucephala clangula, Bucephala islandica, Buteo jamaicensis, Buteo lagopus, Buteo lineatus)",
 "Country is Canada",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON ((-84.76571 41.22334, -58.93394 41.22334, -58.93394 49.85477, -84.76571 49.85477, -84.76571 41.22334))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1469457 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009203-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53bg2w
title: Occurrence Download

description: A dataset containing 963162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Aedes luteocephalus, Aedes africanus, Anopheles gambiae, Culex tritaeniorhynchus, Culex tarsalis, Culex annulirostris, Aedes vigilax, Aedes vexans, Culex quinquefasciatus, Culex pipiens, Armigeres subalbatus, Aedes albopictus, Aedes aegypti)"
 ]
}

 The dataset includes 963162 records from 498 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009229-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zk9e4g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Macropus fuliginosus (Desmarest, 1817))",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015966-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15579084
title: ZAMONAVIY AXBOROT TEXNOLOGIYALARI VA XALQ HUNARMANDCHILIGI ORQALI IJTIMOIY KOMPETENSIYALARINI RIVOJLANTIRISH
DOI: 10.5281/zenodo.15579085
title: ZAMONAVIY AXBOROT TEXNOLOGIYALARI VA XALQ HUNARMANDCHILIGI ORQALI IJTIMOIY KOMPETENSIYALARINI RIVOJLANTIRISH
DOI: 10.5281/zenodo.15548022
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: ** CORRECTION (2025-05-29): Please note that the script Script_For_User_To_Generate_Scores.R had an error whereby single-CpG EpiScores were producing the same score for all samples. This has been corrected in the newest version. This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and SexAgeinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'SexAgeinfo_example.csv' respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example and optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. 

Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run. We have also included separate necessary files to generate the chronological age predictor from Bernabeu et al. in our most recent versions of MethylDetectR. 

Lastly, an additional file called 'Truncate_to_these_CpGs.csv' is available which allows users to subset their methylation file to those CpG sites used in the 'MethylDetectR - Calculate Your Scores' application. This may substantially reduce the size of the methylation file for upload as well as its upload time.
DOI: 10.5281/zenodo.3997264
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: ** CORRECTION (2025-05-29): Please note that the script Script_For_User_To_Generate_Scores.R had an error whereby single-CpG EpiScores were producing the same score for all samples. This has been corrected in the newest version. This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and SexAgeinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'SexAgeinfo_example.csv' respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example and optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. 

Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run. We have also included separate necessary files to generate the chronological age predictor from Bernabeu et al. in our most recent versions of MethylDetectR. 

Lastly, an additional file called 'Truncate_to_these_CpGs.csv' is available which allows users to subset their methylation file to those CpG sites used in the 'MethylDetectR - Calculate Your Scores' application. This may substantially reduce the size of the methylation file for upload as well as its upload time.
DOI: 10.5281/zenodo.3997265
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and Sexinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'Sexinfo_example.csv', respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. Lastly, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run.
DOI: 10.5281/zenodo.4044238
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and Sexinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'Sexinfo_example.csv', respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run. Lastly, coefficients for lifestyle traits and HDL cholesterol are attached as 'Lifestyle_Biochemical_LASSO_Coefficients.xlsx'. These coefficients are separate from those included in the original McCartney and Hillary et al (2018) publication in <em>Genome Biology</em>. The reason for this difference is that the attached coefficients are generated from scaled DNAm data.
DOI: 10.5281/zenodo.4060255
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and Sexinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'Sexinfo_example.csv', respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run. Lastly, coefficients for lifestyle traits and HDL cholesterol are attached as 'Lifestyle_Biochemical_LASSO_Coefficients.xlsx'. These coefficients are separate from those included in the original McCartney and Hillary et al (2018) publication in <em>Genome Biology</em>. The reason for this difference is that the attached coefficients are generated from scaled DNAm data.
DOI: 10.5281/zenodo.4256516
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and Sexinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'Sexinfo_example.csv', respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example, optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run.
DOI: 10.5281/zenodo.4278125
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and SexAgeinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'SexAgeinfo_example.csv', respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example, optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run.
DOI: 10.5281/zenodo.4291880
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and SexAgeinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'SexAgeinfo_example.csv', respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example, optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run.
DOI: 10.5281/zenodo.4642813
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file, SexAgeinfo and Covariates file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds', 'SexAgeinfo_example.csv' and 'Covariates_example.csv', respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example and optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run. Lastly, an additional file called 'Truncate_to_these_CpGs.csv' is available which allows users to subset their methylation file to those CpG sites used in the 'MethylDetectR - Calculate Your Scores' application. This may substantially reduce the size of the methylation file for upload as well as its upload time.
DOI: 10.5281/zenodo.4646300
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and SexAgeinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'SexAgeinfo_example.csv' respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example and optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run. Lastly, an additional file called 'Truncate_to_these_CpGs.csv' is available which allows users to subset their methylation file to those CpG sites used in the 'MethylDetectR - Calculate Your Scores' application. This may substantially reduce the size of the methylation file for upload as well as its upload time.
DOI: 10.5281/zenodo.5863380
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and SexAgeinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'SexAgeinfo_example.csv' respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example and optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run. Lastly, an additional file called 'Truncate_to_these_CpGs.csv' is available which allows users to subset their methylation file to those CpG sites used in the 'MethylDetectR - Calculate Your Scores' application. This may substantially reduce the size of the methylation file for upload as well as its upload time.
DOI: 10.5281/zenodo.5863487
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and SexAgeinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'SexAgeinfo_example.csv' respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example and optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run. Lastly, an additional file called 'Truncate_to_these_CpGs.csv' is available which allows users to subset their methylation file to those CpG sites used in the 'MethylDetectR - Calculate Your Scores' application. This may substantially reduce the size of the methylation file for upload as well as its upload time.
DOI: 10.5281/zenodo.5863500
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and SexAgeinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'SexAgeinfo_example.csv' respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example and optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run. Lastly, an additional file called 'Truncate_to_these_CpGs.csv' is available which allows users to subset their methylation file to those CpG sites used in the 'MethylDetectR - Calculate Your Scores' application. This may substantially reduce the size of the methylation file for upload as well as its upload time.
DOI: 10.5281/zenodo.5869576
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and SexAgeinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'SexAgeinfo_example.csv' respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example and optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run. Lastly, an additional file called 'Truncate_to_these_CpGs.csv' is available which allows users to subset their methylation file to those CpG sites used in the 'MethylDetectR - Calculate Your Scores' application. This may substantially reduce the size of the methylation file for upload as well as its upload time.
DOI: 10.5281/zenodo.7086723
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and SexAgeinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'SexAgeinfo_example.csv' respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example and optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run. We have also included separate necessary files to generate the chronological age predictor from Bernabeu <em>et al.</em> in our most recent versions of MethylDetectR. Lastly, an additional file called 'Truncate_to_these_CpGs.csv' is available which allows users to subset their methylation file to those CpG sites used in the 'MethylDetectR - Calculate Your Scores' application. This may substantially reduce the size of the methylation file for upload as well as its upload time.
DOI: 10.5281/zenodo.7154750
title: MethylDetectR - A Translational Tool for Methylation-Based Health Profiling

description: This dataset includes reproducible code for the two applications related to the 'MethylDetectR' software. These .R files are included as 'MethylDetectR - Calculate Your Scores.R' and 'MethylDetectR.R'. An example DNAm file and SexAgeinfo file for upload to 'MethylDetectR - Calculate Your Scores' are included. These are 'DNAm_File_Example.rds' and 'SexAgeinfo_example.csv' respectively. An example output file from this application/for upload to 'MethylDetectR' is included as 'MethylDetectR - Test For Upload.csv'. An example and optional input file for case/control data is also available as 'MethylDetectR_Case_Control_Example.csv'. Furthermore, a script for the user to generate their own DNAm-based estimated values for human traits is included as 'Script_For_User_To_Generate_Scores.R'. A necessary associated file as 'Predictors_Shiny_By_Groups.csv' is also present for the script to run. We have also included separate necessary files to generate the chronological age predictor from Bernabeu <em>et al.</em> in our most recent versions of MethylDetectR. Lastly, an additional file called 'Truncate_to_these_CpGs.csv' is available which allows users to subset their methylation file to those CpG sites used in the 'MethylDetectR - Calculate Your Scores' application. This may substantially reduce the size of the methylation file for upload as well as its upload time.
DOI: 10.15468/dl.aj8x6h
title: Occurrence Download

description: A dataset containing 45715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Physella acuta"
 ]
}

 The dataset includes 45715 records from 508 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005501-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.