cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3852946_d1.v1
title: Additional file 10 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotated T. californica Transcripts Present in C. milli Not Present in H. sapiens. (XLSX 269 kb)
DOI: 10.3535/8hl-kk0-why
title: Girardia schubarti (Marcus, 1946)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s0b-7wa-r1q
title: Dugesia ryukyuensis Kawakatsu, 1976

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7dy-nrq-hnp
title: Nephtys caeca (Fabricius, 1780)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tnp-sfp-pf3
title: Glossiphonia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852946_d1
title: Additional file 10 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotated T. californica Transcripts Present in C. milli Not Present in H. sapiens. (XLSX 269 kb)
DOI: 10.6084/m9.figshare.c.3852946_d2.v1
title: Additional file 11 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotated T. californica Transcripts Present in H. sapiens Not Present in C. milli. (XLSX 1075 kb)
DOI: 10.3535/ft6-93s-35l
title: Glossiphonia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vs9-tjr-e18
title: Glossiphonia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852952_d1.v1
title: Additional file 1: of Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals

description: Table S1. Statistical significance tests on DMSP data for adult A. millepora under salinity stress: (A) MANOVA, and (B) Tukey post-hoc test. Table S2. MANOVA statistical significance test results for PAM data from adult A. millepora under salinity stress. Table S3. Summary and test statistics for an ANOVA of DMSP concentration in juvenile A. millepora under salinity stress. (XLSX 37 kb)
DOI: 10.3535/h7z-f63-b3d
title: Lineus australis (Punnett, 1900)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zby-02z-1s9
title: Phagocata vivida (Ijima & Kaburaki, 1916)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852955_d1.v1
title: Additional file 1: Table S1. of Evolutionary history of the mariner element galluhop in avian genomes

description: GenBank access numbers for bird genomes. (XLSX 14Â kb)
DOI: 10.3535/w4p-dmw-eer
title: Toxocara canis (Werner, 1782) Stiles in Stiles & Hassall, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852946_d2
title: Additional file 11 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotated T. californica Transcripts Present in H. sapiens Not Present in C. milli. (XLSX 1075 kb)
DOI: 10.3535/3gw-f7y-yy2
title: Phocanema decipiens (Krabbe, 1878) Myers, 1959

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fm5-skq-d9g
title: Glossiphonia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852943_d2.v1
title: MOESM2 of Responses of Synechocystis sp. PCC 6803 to heterologous biosynthetic pathways

description: Additional file 2: Table S6. Average fluxes of reactions models, determined with random sampling.
DOI: 10.6084/m9.figshare.c.3852955_d1
title: Additional file 1: Table S1. of Evolutionary history of the mariner element galluhop in avian genomes

description: GenBank access numbers for bird genomes. (XLSX 14Â kb)
DOI: 10.3535/278-z5t-eht
title: Bdelloura candida (Girard, 1850)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9ex-hns-56b
title: Aulophorus costatus E. Du Bois-Raymond Marcus, 1944

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852943_d2
title: MOESM2 of Responses of Synechocystis sp. PCC 6803 to heterologous biosynthetic pathways

description: Additional file 2: Table S6. Average fluxes of reactions models, determined with random sampling.
DOI: 10.3535/cds-eek-z9b
title: Seidlia auriculata (Ijima & Kaburaki, 1916)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fw7-kng-mqv
title: Nephtys hombergii Savigny in Lamarck, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852952_d1
title: Additional file 1: of Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals

description: Table S1. Statistical significance tests on DMSP data for adult A. millepora under salinity stress: (A) MANOVA, and (B) Tukey post-hoc test. Table S2. MANOVA statistical significance test results for PAM data from adult A. millepora under salinity stress. Table S3. Summary and test statistics for an ANOVA of DMSP concentration in juvenile A. millepora under salinity stress. (XLSX 37 kb)
DOI: 10.3535/4dh-hna-fpb
title: Piscicola

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852952_d2.v1
title: Additional file 2: of Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals

description: Table S4. A. millepora genes differentially expressed in response to hyposaline stress. Table S5. A. millepora aldehyde dehydrogenases that were differentially expressed in response to hyposaline stress, independent of the time factor. Table S6. A. millepora proteasome genes differentially expressed in response to hyposaline stress. (XLSX 81 kb)
DOI: 10.3535/3cb-av6-bzj
title: Tomopteris rolasi Greeff, 1885

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gqd-j3f-446
title: Scoloplos armiger (Müller, 1776)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852946_d3.v1
title: Additional file 12 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotated Proteins Present in H. sapiens and C. milli Not Present in T. californica. (XLSX 1976 kb)
DOI: 10.3535/eey-mt9-bbr
title: Glycera capitata Örsted, 1842

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ka1-hvj-elm
title: Glycera capitata Örsted, 1842

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852952_d2
title: Additional file 2: of Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals

description: Table S4. A. millepora genes differentially expressed in response to hyposaline stress. Table S5. A. millepora aldehyde dehydrogenases that were differentially expressed in response to hyposaline stress, independent of the time factor. Table S6. A. millepora proteasome genes differentially expressed in response to hyposaline stress. (XLSX 81 kb)
DOI: 10.3535/8lc-v4f-t49
title: Polycelis Ehrenberg, 1831

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/abh-jwz-l9p
title: Girardia Ball, 1974

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hzc-0vz-7we
title: Seidlia schmidti Zabusov, 1916

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tn1-gc3-b5v
title: Polycelis Ehrenberg, 1831

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852943_d3.v1
title: MOESM3 of Responses of Synechocystis sp. PCC 6803 to heterologous biosynthetic pathways

description: Additional file 3. Updated metabolic models.
DOI: 10.6084/m9.figshare.c.3852952_d3.v1
title: Additional file 3: of Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals

description: Predicted protein sequences from A. millepora considered as candidates for roles in DMSP production. (TXT 36 kb)
DOI: 10.3535/129-lvk-082
title: Taenia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xs1-rkq-5w6
title: Syllis gracilis Grube, 1840

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852946_d4.v1
title: Additional file 13 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotated T. californica Transcripts Present in H. sapiens and C. milli. (XLSX 2211 kb)
DOI: 10.3535/119-jsp-cel
title: Dugesia japonica Ichikawa & Kawakatsu, 1964

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/57c-6j8-hm5
title: Nephtys longosetosa Örsted, 1842

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852943_d3
title: MOESM3 of Responses of Synechocystis sp. PCC 6803 to heterologous biosynthetic pathways

description: Additional file 3. Updated metabolic models.
DOI: 10.6084/m9.figshare.c.3852955_d3.v1
title: Additional file 3: of Evolutionary history of the mariner element galluhop in avian genomes

description: Fasta consensus sequences. (FASTA 6Â kb)
DOI: 10.3535/7x1-sdt-xh5
title: Falcaustra Lane, 1915

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ghe-3qs-tf3
title: Myrianida prolifera (O.F. Müller, 1788)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3852946_d3
title: Additional file 12 of Draft de novo transcriptome assembly and proteome characterization of the electric lobe of Tetronarce californica: a molecular tool for the study of cholinergic neurotransmission in the electric organ

description: Cross-Annotated Proteins Present in H. sapiens and C. milli Not Present in T. californica. (XLSX 1976 kb)
DOI: 10.3535/7ea-74r-v89
title: Cloeosiphon aspergillus (Quatrefages, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mvz-la8-ngm
title: Filaroides martis (Werner, 1872) Dougherty, 1943

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xdm-6ea-frf
title: Cloeosiphon aspergillus (Quatrefages, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3nq-b1f-bsr
title: Hydroides pseudouncinata pseudouncinata Zibrowius, 1968

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dyp-wcg-169
title: Phascolosoma Leuckart, 1828

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.10847389
title: Data from Large-Aperture Scintillometer (LAS) path measurements between Berlin – Wedding (BEWEDD) and Berlin – Mitte (BEMITT) from 2021-09-02 to 2022-07-15 [RAW]

description: Original data files from LAS measurements.
description: TECHNICAL INFO

No data quality control has been carried out. No gap-filling has been applied. Detailed information about the sites and deployments can be found in the urbisphere-Berlin campaign technical documentation.

Files are organised in sub-directories per year and day of year (DOY).

COPYRIGHT NOTICE

Copyright Jörn Birkmann, Andreas Christen, Nektarios Chrysoulakis, and Sue Grimmond. Some rights reserved.

CREATOR NOTICE

This work is owned by the Principal Investigators (PIs) of the Urbisphere project. 

ATTRIBUTION NOTICE

The [creation and] curation of this work has been funded by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No 855005). 

DISCLAIMER NOTICE

The use of the work is at the user's own risk. The authors, the involved institutions, and/or the European Research Council accept no liability for material or non-material damage arising from the use or non-use or from the use of incorrect or incomplete information in this work. The authors, the involved institutions, and/or the European Research Council are not responsible for any use that may be made of the information in this work. The legal provisions remain unaffected.

MATERIAL NOTICE

The notices cover data in databases, text and images contained in the work.

MATERIAL URI

Urbisphere project
DOI: 10.5281/zenodo.10847390
title: Data from Large-Aperture Scintillometer (LAS) path measurements between Berlin – Wedding (BEWEDD) and Berlin – Mitte (BEMITT) from 2021-09-02 to 2022-07-15 [RAW]

description: Original data files from LAS measurements.
description: TECHNICAL INFO

No data quality control has been carried out. No gap-filling has been applied. Detailed information about the sites and deployments can be found in the urbisphere-Berlin campaign technical documentation.

Files are organised in sub-directories per year and day of year (DOY).

COPYRIGHT NOTICE

Copyright Jörn Birkmann, Andreas Christen, Nektarios Chrysoulakis, and Sue Grimmond. Some rights reserved.

CREATOR NOTICE

This work is owned by the Principal Investigators (PIs) of the Urbisphere project. 

ATTRIBUTION NOTICE

The [creation and] curation of this work has been funded by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No 855005). 

DISCLAIMER NOTICE

The use of the work is at the user's own risk. The authors, the involved institutions, and/or the European Research Council accept no liability for material or non-material damage arising from the use or non-use or from the use of incorrect or incomplete information in this work. The authors, the involved institutions, and/or the European Research Council are not responsible for any use that may be made of the information in this work. The legal provisions remain unaffected.

MATERIAL NOTICE

The notices cover data in databases, text and images contained in the work.

MATERIAL URI

Urbisphere project
DOI: 10.3535/l61-rxl-gn2
title: Cerebratulus ischurus Punnett, 1903

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q9x-ym6-3mp
title: Octolasion lacteum (Örley, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/87y-5y3-4w6
title: Piscicola

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ams-dw1-g72
title: Lamellibrachia luymesi van der Land & Nørrevang, 1975

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0te-n8g-gfr
title: Spirobranchus triqueter (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z63-7jf-aer
title: Bipalium nobile Kawakatsu & Makino, 1982

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2tz-dkt-x94
title: Polycelis Ehrenberg, 1831

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gl4-hjk-5ah
title: Chaetogaster diaphanus (Gruithuisen, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8va-7h1-8x6
title: Pheretima Kinberg, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gfa-jc9-1cb
title: Branchiomma nigromaculatum (Baird, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/760-wcp-kcj
title: Branchiomma bairdi (McIntosh, 1885)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mc2-9pe-3tz
title: Slavina appendiculata (d'Udekem, 1855)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/667-ew3-yvx
title: Dolichoplana Moseley, 1877

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cys-3kg-rkw
title: Rhynchodemus sylvaticus (Leidy, 1851) Leidy, 1851

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e2w-c3z-ys7
title: Peripatoides novaezealandiae (Hutton, 1876)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3854170_d2.v1
title: Additional file 2: of The typically developing paediatric foot: how flat should it be? A systematic review

description: Epidemiological Appraisal Instrument. (XLSX 16 kb)
DOI: 10.3535/le5-693-bt8
title: Dendrocoelopsis americana (Hyman, 1939)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rq8-gcz-6sw
title: Dero pectinata Aiyer, 1929

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3854170_d2
title: Additional file 2: of The typically developing paediatric foot: how flat should it be? A systematic review

description: Epidemiological Appraisal Instrument. (XLSX 16 kb)
DOI: 10.3535/qxa-0x5-7qb
title: Ligula intestinalis (Linnaeus, 1758) Gmelin, 1790

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rp8-qgm-a7g
title: Pheretima Kinberg, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25378/janelia.24246553
title: Manual organelle segmentations (crop86) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of interphase HeLa cell (jrc_hela-3)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><br><br>- <b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<br><br>- <b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<br><br><b>Annotation description</b>: Dense segmentations of nucleus in jrc_hela-3 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<br><br><b>Annotation ID</b>: crop86<br><br><b>Primary Annotator</b>: Aubrey Weigel<br><br><b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<br><br><b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<br><br><b>Annotated voxel size (nm)</b>: 2 x 2 x 2 (x, y, z)<br><br><b>Annotated data dimensions (µm)</b>: 0.8 x 0.8 x 0.8 (x, y, z)<br><br><b>Annotated data offset (nm)</b>: 26479 x 1079 x 21719 (x, y, z)<br><br><b>Classes annotated</b>: nucleus<br><br><b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_hela-3/jrc_hela-3.zarr/recon-1/labels/groundtruth/crop86<br><br><b>Source (EM) dataset ID</b>: jrc_hela-3<br><br><b>Source (EM) voxel size (nm)</b>: 4 x 4 x 3.24 (x, y, z)<br><br><b>Source (EM) data dimensions (µm)</b>: 49.6 x 4 x 38.88 (x, y, z)<br><br><b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.13114244<br><br><b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_hela-3<br><br><b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<br><br><b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<br><br><b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.3535/51l-xw0-n66
title: Girardia Ball, 1974

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mrq-ctl-ryc
title: Phagocata vivida (Ijima & Kaburaki, 1916)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.