cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qv7zm2
title: Occurrence Download

description: A dataset containing 8041 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Monticola explorator (Vieillot, 1818)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 8041 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082092-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15777680
title: DADOS_HISTORICOS
title: DADOS_HISTORICOS
title: DADOS_HISTORICOS

description: DADOS HISTORICOS
DOI: 10.5281/zenodo.15777681
title: DADOS_HISTORICOS
title: DADOS_HISTORICOS
title: DADOS_HISTORICOS

description: DADOS HISTORICOS
DOI: 10.15468/dl.29pyub
title: Occurrence Download

description: A dataset containing 777 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Juglans mollis Engelm."
 ]
}

 The dataset includes 777 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082091-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2jmvg
title: Occurrence Download

description: A dataset containing 325 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Juglans pyriformis Liebm."
 ]
}

 The dataset includes 325 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082093-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34847/nkl.69c45aak
title: Dictionary of Bigram-Score extracted from BNC with all association meausres by NLTK

description: a product of the project A4LL (ANR-22-CE38-0015-01)
https://sites-recherche.univ-rennes2.fr/lidile/en/a4ll/

# The dictionary contains Bigrams extracted from BNC with a window of four.
#
# First level:
# key: the specified association measure (tuple)
# value: the bigram-score pair of this measure (dictionary)
#
# Second level:
# key: bigram (tuple)
# value: score of the bigram in BNC (numeric)

# check all available measures on the webpage:
# https://tedboy.github.io/nlps/generated/generated/nltk.BigramAssocMeasures.html
#
tuple_measures = ('chi_sq','dice','fisher','jaccard','likelihood_ratio','mi_like','phi_sq','pmi','poisson_stirling','raw_freq','student_t')
DOI: 10.34847/nkl.69c54gki
title: arm 252 f.120v and f.121r
title: NT.VMR Doc ID 910252

description: arm 252 (CBL Arm 554) f.120v and f.121r; transcription and English translation by Albert ten Kate (independent researcher, NL); TEI/XML and HTML encoding by Mina Monier (SNSF project MARK16).
description: arm 252 (CBL Arm 554) is an Armenian manuscript containing the four Gospels, written in 1174 (Armenians year 623) in Edessa by Barsegh for the cleric Grigor, as indicated in the colophon. It also contains the portraits of the four Evangelists, the Letter of Eusebius and Canon tables. Written in one column, it contains 253 folios. Size is 25.5 x 16.5 cm. It is currently located in the Chester Beatty Library and has not been digitized, a part of the two folios f. 120v and 121r, which are presented in the SNSF project MARK16. The f.121v contains Luke’s portrait (see Plate 1A in der Nerssian’s catalogue). The Gospel according to Mark ends at 16.8 ,in folio 121r, without any comments or marginal notes. © Claire Clivaz, SNSF project MARK 16 CC-BY 4.0
description: Temporal: 910252
description: Bibliographic citation: arm 252
description: Provenance: Chester Beatty Library
description: date: 1174 CE
DOI: 10.15468/dl.nmt238
title: Occurrence Download

description: A dataset containing 275 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cedrus deodara (Lamb.) G.Don",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 275 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082095-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tabu54
title: Occurrence Download

description: A dataset containing 842 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Monticola imerina (Hartlaub, 1860)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 842 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082096-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjun8j
title: Occurrence Download

description: A dataset containing 3046 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salix repens L.",
 "Geometry POLYGON((-8.00174339329464 54.1998526673513, 0.202120938926891 54.1998526673513, 0.202120938926891 61.2628565887411, -8.00174339329464 61.2628565887411, -8.00174339329464 54.1998526673513))",
 "CoordinateUncertaintyInMeters is 0,101",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3046 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082097-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/276310d259891672825fbf25431fac52
title: Laboratory study on microplastic fiber size and concentration effects on leopard frog (Lithobates pipiens) tadpole survival, development, behavior, and parasite susceptibility

description: This dataset contains comprehensive raw data from a completed laboratory experiment conducted from May 24 to June 30, 2021 (with additional analysis performed in 2025), investigating the effects of polyester microplastic (MP) fiber exposure on northern leopard frog (Lithobates pipiens) tadpoles and their interactions with echinostome trematodes (Echinostoma sp.). Tadpole egg masses were collected from a wetland in Indiana, USA, and ramshorn snails (Helisoma trivolvis), serving as trematode hosts, were collected from Tioga County, New York, USA. The experiment was conducted under controlled laboratory conditions using a static-renewal design, exposing tadpoles to short (~0.24 mm) or long (~1.50 mm) polyester MP fibers at concentrations of 0, 10, or 40 µg L⁻¹ for 32 days, followed by controlled exposure to echinostome cercariae. The dataset includes measurements of tadpole mortality, developmental traits (mass, snout-to-vent length, Gosner stage), behavioral activity (number of moving pre- and post-parasite exposure), MP fiber ingestion, and susceptibility to trematode infection (metacercarial cyst counts in kidneys).
 
 These data provide a resource for studying the ecological and toxicological impacts of microplastics on amphibian health, and host-parasite dynamics in freshwater ecosystems, making the dataset suitable for researchers in ecotoxicology, and disease ecology. The dataset is complete, with no ongoing data collection, and is designed to support analyses of microplastic-mediated effects on aquatic organisms.
DOI: 10.15468/dl.yk649n
title: Occurrence Download

description: A dataset containing 2532 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Monticola rufocinereus (Rüppell, 1837)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 2532 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082098-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29438750
title: Modular Derangement Theory

description: Theory proving the conditions for sucessfull generation of a deranged residue permutation set from the coprime multiplier set sequence used to create it.
DOI: 10.6084/m9.figshare.29438750.v1
title: Modular Derangement Theory

description: Theory proving the conditions for sucessfull generation of a deranged residue permutation set from the coprime multiplier set sequence used to create it.
DOI: 10.15468/dl.rj96vw
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus halepensis Mill.",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082099-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ss6xwu
title: Occurrence Download

description: A dataset containing 769 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Inventario de la fauna arrecifal asociada al ecosistema de Pocillopora en el Pacífico Tropical Mexicano",
 "Geometry POLYGON((-100.02171 16.76138,-99.70625 16.76138,-99.70625 16.88751,-100.02171 16.88751,-100.02171 16.76138))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 769 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082102-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vww43s
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus halepensis Mill.",
 "Country is Cyprus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082101-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9fx8pz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus halepensis Mill.",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082100-250525065834625/datasets/export for details.
DOI: 10.15468/dl.vfy73f
title: Occurrence Download

description: A dataset containing 31069 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Monticola rupestris (Vieillot, 1818)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 31069 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082103-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dckm9k
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Licaria cervantesii (Kunth) Kosterm."
 ]
}

 The dataset includes 158 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082104-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.seuwvt
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus halepensis Mill.",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 47 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082107-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7gyvu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus halepensis Mill.",
 "Country is Lesotho",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082106-250525065834625/datasets/export for details.
DOI: 10.15468/dl.5rayc2
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Licaria nayaritensis (Lundell) Lundell"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082108-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29367305.v18
title: Syllogistic reasoning pdf v1-2-3-4 NEW

description: Logic and being
DOI: 10.6084/m9.figshare.29310668.v24
title: Logic 14 pdf NEW

description: Logic innovation
DOI: 10.5281/zenodo.15778062
title: Dataset for "AtomProNet: Data flow to and from machine learning interatomic potentials in materials science"

description: This dataset supports the paper “AtomProNet: Data Flow To and From Machine Learning Interatomic Potentials in Materials Science”.Access the paper here: https://arxiv.org/abs/2501.14039



The MACE folder includes:





mace_tutorial.ipynb – A Jupyter Notebook with installation instructions and training workflow.




Datasets/ – Contains training, validation, and testing datasets used for Al₂O₃.





The Allegro folder includes:





Allegro_model_Nov2024.ipynb – A Jupyter Notebook with Allegro installation details.




tutorial.yaml – Allegro configuration file.




MLIP_data_16k.extxyz – Dataset used for Al₂O₃ MLIP training, validation, and testing.
DOI: 10.5281/zenodo.15778063
title: Dataset for "AtomProNet: Data flow to and from machine learning interatomic potentials in materials science"

description: This dataset supports the paper “AtomProNet: Data Flow To and From Machine Learning Interatomic Potentials in Materials Science”.Access the paper here: https://arxiv.org/abs/2501.14039



The MACE folder includes:





mace_tutorial.ipynb – A Jupyter Notebook with installation instructions and training workflow.




Datasets/ – Contains training, validation, and testing datasets used for Al₂O₃.





The Allegro folder includes:





Allegro_model_Nov2024.ipynb – A Jupyter Notebook with Allegro installation details.




tutorial.yaml – Allegro configuration file.




MLIP_data_16k.extxyz – Dataset used for Al₂O₃ MLIP training, validation, and testing.
DOI: 10.15468/dl.qmxq9u
title: Occurrence Download

description: A dataset containing 4860 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Monticola saxatilis (Linnaeus, 1766)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 4860 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082110-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7vkaq
title: Occurrence Download

description: A dataset containing 992 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Linnaea borealis L.",
 "Geometry POLYGON((-8.00174339329464 54.1998526673513, 0.202120938926891 54.1998526673513, 0.202120938926891 61.2628565887411, -8.00174339329464 61.2628565887411, -8.00174339329464 54.1998526673513))",
 "CoordinateUncertaintyInMeters is 0,101",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 992 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082109-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3n7qgf
title: Occurrence Download

description: A dataset containing 1231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Indonesia",
 "TaxonKey is Varanus salvator (Laurenti, 1768)"
 ]
}

 The dataset includes 1231 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004842-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34973/bg4e-dm08
title: Collagen-heparin-FGF2-VEGF scaffolds induce a regenerative gene expression profile in a fetal sheep wound model: research data underlying the associated publication

description: This data collection contains data underlying the results published in the accompanying publication. Below is a short explanation of the experiment the content of the collection. 

Background: Stimulating skin regeneration in utero would greatly benefit treatment outcome of spina bifida, where missing tissues expose the spinal cord leading to detrimental effects on neurological development. Surgical closure of the defects often lead to scarring and contractures. Previous research demonstrated that porous type I collagen (COL) scaffold, functionalized with heparin (HEP), fibroblast growth factor 2 (FGF2) and vascular endothelial growth factor (VEGF) (COL-HEP/GF) improved pre- and postnatal skin regeneration in a fetal sheep full thickness wound model. 

Goal of the research: determining the gene expression profiles of healing fetal skin wounds two weeks after implantation of the COL(-HEP/GF) scaffolds. Gene expression was measured using Affymetrix Microarrays and differentially expressed genes (DEG) were identified in the epidermis and dermis between untreated wounds, COL-treated wounds and wounds treated with COL-HEP/GF. From these DEG’s, the biological processes underlying the improved skin regeneration were uncovered.

Content of the collection:
- Microarray data. The gene expression profiles of full thickness wounds 2 weeks after implantation of the COL(-HEP/GF) biomaterial was investigated using Affymetrix GeneChips. The epidermis and dermis skin layer was analysed separately. The original files (in Affymetrix standard .CEL format) are the gene expression intensity readouts of each individual chip, and these are present in this collection in case re-users want to perform a full analysis of the data. The data folder contains Excel files with the differential gene expression values extracted from the chips, organized between the two skin layers and comparisons between treatments.
- Biological gene ontology processes. These processes were identified using the freely accessible online database DAVID, where enriched biological processes were extracted from the lists of DEGs. The .text files contain all biological processes (labeled with gene ontology (GO) terms) found to be overrepresented in each skin layer and comparison.
- qPCR validation. The results of the microarray analysis were validated via quantitative polymerase chain reaction (qPCR). Top-upregulated DEGs were selected from each comparison and their expression levels were investigated through qPCR. The raw qPCR data for each gene is included in the collection.
DOI: 10.34973/qr4j-y723
title: Phoneme and Word Recognition Test Outcomes from Auditory Diagnostics and Error-based Treatment trial

description: This data-collection contains the Phoneme and Word Recognition data of the participants of the Auditory Diagnostics and Error-based Treatment (AuDiET) trial.

Research Aim
The main objective of the AuDiET trial was to assess the effectiveness of an integrated program of fitting and training interventions aimed at reducing unexpected variability and addressing the specific error patterns of each recipient. The participants underwent a series of diagnostic tests during five visits, including the Phoneme Recognition in Quiet (PRQ) test and Speech in quiet (CVC) test. 
Based on the outcomes of PRQ test at the first visit, the participants received interventions concerning both the fitting (visit 2) of their CI and personalized auditory training (visit 3) based on their personal error patterns. Effect of training was assessed at visit 4 and long-term retention of the interventions at visit 5.
DOI: 10.34973/c0nw-ay83
title: CMyGuideline - CML patient data for building decision making tool to predict CVD risk

description: Chronic Myeloid Leukemia (CML) is a clonal myeloproliferative disorder of the hematopoietic system, caused by the constitutively active BCR-ABL tyrosine kinase from the translocation that produces the Philadelphia chromosome. Patients usually are treated with different Tyrosine Kinase Inhibitor (TKI) in their chronic phases for several years. During the treatment, cardiovascular disease risk (CVD) is one of the most important factors for doctors and patients to consider when making the optimal treatment plan for patients.


CVD Predictive Model: We plan to build models in 3 steps by adding the possible risk factors. We start with the model by only looking at the general population. Then, we add factors for CML patients and see if they have higher/lower CVD risks compared to the general population. Lastly, we add treatment factors to see how the TKI or other treatments affect the CVD risks in CML patients. We requested and used MIMIC Clinical Database as starting point and then accessed to real-world patient data from Radbound UMC+. 

Please read the CML_CVD_data_request_info.pdf for data use and request details.

Please note that using patient data from MIMIC requires granted permission from https://physionet.org/content/mimiciii/1.4/
DOI: 10.34973/svbt-es60
title: Hypomagnesemia with varying degrees of extrarenal symptoms as a consequence of heterozygous CNNM2 variants

description: This collection contains the data for the study "hypomagnesemia with varying degrees of extrarenal symptoms as a consequence of heterozygous CNNM2 variants", which was published as part of a thesis and in Scientific Reports (PMID: 38519529).

Variants in the CNNM2 gene are causative for hypomagnesemia, seizures and intellectual disability, although the phenotypes can be variable. This study aims to understand the genotype-phenotype relationship in affected individuals with CNNM2 variants by phenotypic, functional and elaborate structural analysis of novel variants. This results in the identification of seven variants that significantly affect CNNM2-mediated magnesium transport. Pathogenicity of these variants is further supported by structural modelling, which predicts CNNM2 structure to be affected by all of them. Strikingly, seizures and intellectual disability are absent in 4 out of 7 cases, indicating these phenotypes are caused either by specific CNNM2 variant only or by additional risk factors.