cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6280799.v1
title: A skeleton of a Uintan machaeroidine ‘creodont’ and the phylogeny of carnivorous eutherian mammals

description: An edentulous partial skeleton of a carnivorous mammal from the Uinta Formation (middle Eocene) of Utah is referred to the rare and enigmatic sabre-tooth clade Machaeroidinae primarily on the basis of alveolar patterns and cranial morphology. The newly recognized skeleton includes portions of both girdles, all long bones, and the first known tarsal and phalangeal material of a machaeroidine. The specimen permits a preliminary reconstruction of the locomotor habits of machaeroidines, which appear to have been adapted to scansorial or arboreal rather than terrestrial locomotion. The new material also prompts a review of machaeroidine affinities, which have been unresolved for over a century, with consensus opinion favouring a link to either oxyaenid or limnocyonine hyaenodontid ‘creodonts’. Postcranial evidence favours a link to oxyaenids, as machaeroidines share numerous features with oxyaenids that are lacking in hyaenodontids. To test this relationship machaeroidines were included in a phylogenetic analysis broadly sampling early carnivorous eutherians, including members of both ‘Creodonta’ and Carnivoramorpha. Results place Machaeroidinae within Oxyaenidae but fail to support either ‘creodont’ or carnivoramorphan monophyly. Instead, Oxyaenidae is linked with Carnivoraformes, while Viverravidae is basally positioned among carnivorous eutherians. Reconsideration of the character evidence cited in support of Carnivoramorpha indicates that many features are ambiguous in the context of a broad sample of ‘creodonts’ and early carnivoramorphans. Hyaenodontid monophyly is also not recovered but this likely reflects the influence of one morphologically divergent genus, <i>Arfia</i>.
DOI: 10.6084/m9.figshare.6280796
title: Germond et al. 2018a-Raman & gene expression datasets.xlsx

description: This file include 2 datasets used in Germond et al. 2018<br><b>Biological samples</b>: Eleven E. coli strains described in Suzuki et al. 2014 Nature Communication. One strain is the parental strain MDS42 and 10 others are evolved strains that acquired a resistance against antibiotic drugs during a 3 month period of evolution. Cell lines are labelled according to the antibiotic drug they were evolved in.<b><br></b><b>1st dataset: </b>Raman spectral dataset of 624 independent populations of Escherichia coli measured 5 times each by Raman spectroscopy. Average data of the five measurements are presented. Measurements were performed using a 532 nm excitation wavelength using 5 sec exposure per measure.<br><b>2nd dataset: </b>Transcriptome data of E coli strains as measured by microarray. The log10-transformed expression levels after quantile normalization are presented. Genes for which the expression value was below 2.0 were removed, as recommended by the manufacturer, leaving 2613 genes (out of 4600+) in the dataset. <br>Please refer to Germond et al. 2018a Communication Biology when using this dataset. See the publication for the detailed measurement procedures.
DOI: 10.6084/m9.figshare.6280739
title: Dataset for: BEHAVIORAL STATE-SPECIFIC NEURONS IN THE MOUSE MEDULLA INVOLVED IN SLEEP-WAKE SWITCHING

description: The medullary reticular formation (RF) is involved in the maintenance of several vital physiological functions and level of vigilance. In the present study in non-anesthetized, head-fixed mice, I examined the role of medullary RF neurons in the control of sleep-wake states, i.e. wakefulness (W), slow-wave sleep (SWS), and paradoxical (or rapid eye movement) sleep (PS). I showed, for the first time, that the mouse medullary RF contains presumed SWS-promoting, SWS-on neurons that remain silent during W, display a sharp increase in discharge rate at sleep onset, and discharge tonically and selectively during SWS. In addition, I showed the presence in the medullary RF of both PS-on and PS-off neurons, which, respectively, commence discharging or cease firing selectively just prior to, and during, PS. PS-off neurons were located in the raphe nuclei and ventral medulla, while PS-on neurons were found in both the lateral part of the ventral gigantocellular reticular nucleus and the raphe nuclei, as were SWS-on neurons. PS-off and SWS-on neurons appear to play an important role in both the W-SWS and SWS-PS switches, while PS-on and PS-off neurons play an important role in the PS-W switch. The present findings on the trends in spike activity at the transitions from SWS to PS and from PS to W are in line with the reciprocal interaction hypothesis according to which PS occurs as a result of the cessation of discharge of PS-off neurons, while PS ends as a result of the start of discharge of PS-off neurons.
DOI: 10.6084/m9.figshare.6280739.v1
title: Dataset for: BEHAVIORAL STATE-SPECIFIC NEURONS IN THE MOUSE MEDULLA INVOLVED IN SLEEP-WAKE SWITCHING

description: The medullary reticular formation (RF) is involved in the maintenance of several vital physiological functions and level of vigilance. In the present study in non-anesthetized, head-fixed mice, I examined the role of medullary RF neurons in the control of sleep-wake states, i.e. wakefulness (W), slow-wave sleep (SWS), and paradoxical (or rapid eye movement) sleep (PS). I showed, for the first time, that the mouse medullary RF contains presumed SWS-promoting, SWS-on neurons that remain silent during W, display a sharp increase in discharge rate at sleep onset, and discharge tonically and selectively during SWS. In addition, I showed the presence in the medullary RF of both PS-on and PS-off neurons, which, respectively, commence discharging or cease firing selectively just prior to, and during, PS. PS-off neurons were located in the raphe nuclei and ventral medulla, while PS-on neurons were found in both the lateral part of the ventral gigantocellular reticular nucleus and the raphe nuclei, as were SWS-on neurons. PS-off and SWS-on neurons appear to play an important role in both the W-SWS and SWS-PS switches, while PS-on and PS-off neurons play an important role in the PS-W switch. The present findings on the trends in spike activity at the transitions from SWS to PS and from PS to W are in line with the reciprocal interaction hypothesis according to which PS occurs as a result of the cessation of discharge of PS-off neurons, while PS ends as a result of the start of discharge of PS-off neurons.
DOI: 10.6084/m9.figshare.6280727
title: Monumental Twin Trees of Shrine Gate in Japan (Hiromasa Mukaide Works)

description: "Monumental Twin Trees of Shrine Gate in Japan"<br><br>All of data were obtained from Dr. Mukaide 's work. Watanabe uploaded data on behalf of Dr. Mukaide.<br><br>The full paper including Dr. Mukaide's hypothesis is compiled into a file named "Assumed region of the Nankai earthquake and the Twin Trees of Shrine Gate".<br>The original photo data is stocked in Google Photo shared in below URL.<br>https://photos.google.com/u/6/share/AF1QipPAFCOpLh_vwKXUJM35zH0d6cnaJ3SlL8ug3i6OjhPTgdFVibAZgn_r2GdpTfyV_Q?key=U3lfWWY2dzBQTngtOHN4QmJHSlZvUGhUekpEZmxB<br>The information of the original photo data is written in "Mukaide_Twin_Trees_Photo_Collection.pdf"and"Mukaide_Twin_Trees_Photo_Collection_Thumbnail.pdf"in this dataset.<br>
DOI: 10.6084/m9.figshare.6280727.v1
title: Twin Trees of Shrine Gate in Japan (Hiromasa Mukaide Works)

description: Twin Trees of Shrine Gate in Japan.Hiromasa Mukaide Works.<br>Digitized by Eiji Watanabe and Kiwako Sakamoto.
DOI: 10.6084/m9.figshare.6280727.v2
title: Monumental Twin Trees of Shrine Gate in Japan (Hiromasa Mukaide Works)

description: Monumental Twin Trees of Shrine Gate in Japan.Hiromasa Mukaide Works.<br>Digitized by Eiji Watanabe and Kiwako Sakamoto.
DOI: 10.6084/m9.figshare.6280727.v3
title: Monumental Twin Trees of Shrine Gate in Japan (Hiromasa Mukaide Works)

description: Hiromasa Mukaide Works.<br><br>"Monumental Twin Trees of Shrine Gate in Japan"<br>The full paper including Dr. Mukaide's hypothesis is compiled into a file named "Assumed region of the Nankai earthquake and the Twin Trees of Shrine Gate".<br><br>Hiromasa Mukaide, All Rights Reseaved. 2018
DOI: 10.6084/m9.figshare.6280727.v4
title: Monumental Twin Trees of Shrine Gate in Japan (Hiromasa Mukaide Works)

description: Hiromasa Mukaide Works.<br><br>"Monumental Twin Trees of Shrine Gate in Japan"<br>The full paper including Dr. Mukaide's hypothesis is compiled into a file named "Assumed region of the Nankai earthquake and the Twin Trees of Shrine Gate".<br><br>Hiromasa Mukaide, All Rights Reseaved. 2018-
DOI: 10.6084/m9.figshare.6280727.v6
title: Monumental Twin Trees of Shrine Gate in Japan (Hiromasa Mukaide Works)

description: "Monumental Twin Trees of Shrine Gate in Japan"<br><br>All of data were obtained from Dr. Mukaide 's work. Watanabe uploaded data on behalf of Dr. Mukaide.<br><br>The full paper including Dr. Mukaide's hypothesis is compiled into a file named "Assumed region of the Nankai earthquake and the Twin Trees of Shrine Gate".<br>The original photo data is stocked in Google Photo shared in below URL.<br>https://photos.google.com/u/6/share/AF1QipPAFCOpLh_vwKXUJM35zH0d6cnaJ3SlL8ug3i6OjhPTgdFVibAZgn_r2GdpTfyV_Q?key=U3lfWWY2dzBQTngtOHN4QmJHSlZvUGhUekpEZmxB<br>The information of the original photo data is written in "Mukaide_Twin_Trees_Photo_Collection.pdf"and"Mukaide_Twin_Trees_Photo_Collection_Thumbnail.pdf"in this dataset.<br>
DOI: 10.6084/m9.figshare.6280727.v5
title: Monumental Twin Trees of Shrine Gate in Japan (Hiromasa Mukaide Works)

description: Hiromasa Mukaide Works.<br><br>"Monumental Twin Trees of Shrine Gate in Japan"<br>The full paper including Dr. Mukaide's hypothesis is compiled into a file named "Assumed region of the Nankai earthquake and the Twin Trees of Shrine Gate".<br><br>Hiromasa Mukaide, All Rights Reseaved. 2018-<br>The original photo data is stocked in Google Photo shared in below URL.<br>https://photos.google.com/u/6/share/AF1QipPAFCOpLh_vwKXUJM35zH0d6cnaJ3SlL8ug3i6OjhPTgdFVibAZgn_r2GdpTfyV_Q?key=U3lfWWY2dzBQTngtOHN4QmJHSlZvUGhUekpEZmxB<br>The information of the original photo data is written in "Mukaide_Twin_Trees_Photo_Collection.pdf".<br>
DOI: 10.6084/m9.figshare.6280712
title: KREATIVITAS TARI PADA ANAK USIA DINI

description: Menari adalah aktivitas menggerakan tubuh untuk mengekspresikan gagasan, merespon musik, dan mencurahkan perasaan. Tujuan pembelajaran seni tari adalah untuk mendemonstrasikan suatu ketrampilan motorik (misalnya berlari, melompat, meloncat dan lain-lain), melatih keseimbangan saat bergerak, menempatkan diri dalam peran dan situasi tertentu serta memahami dan mengikuti instruksi.Menari sebagai salah satu bentuk kegiatan seni, memiliki keragaman jenis, namun tidak semua kegiatan menari sesuai untuk anak usia dini. Menari lebih spesifik dikatakan oleh Stinson sebagai gerakan yang beraturan, signifikan dan dipengaruhi oleh penjiwaan. Tari yang kreatif adalah gerakan yang ditampilkan secara menarik dengan menyesuaikan alunan lagu atau musik. Terlepas dari itu, gerakan tari untuk anak usia dini sebaiknyayang mudah dan tidak terlalu bervariasi, menyenangkan dan dalam kondisi tertentu gerakan tari anak bersifat alami.<br>
DOI: 10.6084/m9.figshare.6280712.v2
title: KREATIVITAS TARI PADA ANAK USIA DINI

description: Menari adalah aktivitas menggerakan tubuh untuk mengekspresikan gagasan, merespon musik, dan mencurahkan perasaan. Tujuan pembelajaran seni tari adalah untuk mendemonstrasikan suatu ketrampilan motorik (misalnya berlari, melompat, meloncat dan lain-lain), melatih keseimbangan saat bergerak, menempatkan diri dalam peran dan situasi tertentu serta memahami dan mengikuti instruksi.Menari sebagai salah satu bentuk kegiatan seni, memiliki keragaman jenis, namun tidak semua kegiatan menari sesuai untuk anak usia dini. Menari lebih spesifik dikatakan oleh Stinson sebagai gerakan yang beraturan, signifikan dan dipengaruhi oleh penjiwaan. Tari yang kreatif adalah gerakan yang ditampilkan secara menarik dengan menyesuaikan alunan lagu atau musik. Terlepas dari itu, gerakan tari untuk anak usia dini sebaiknyayang mudah dan tidak terlalu bervariasi, menyenangkan dan dalam kondisi tertentu gerakan tari anak bersifat alami.<br>
DOI: 10.6084/m9.figshare.6280058
title: MOESM6 of A method for estimating relative changes in the synaptic density in Drosophila central nervous system

description: Additional file 6: Table S3. The raw data used to produce FigureÂ 6B and C.
DOI: 10.6084/m9.figshare.6280058.v1
title: MOESM6 of A method for estimating relative changes in the synaptic density in Drosophila central nervous system

description: Additional file 6: Table S3. The raw data used to produce FigureÂ 6B and C.
DOI: 10.6084/m9.figshare.6280046
title: MOESM5 of A method for estimating relative changes in the synaptic density in Drosophila central nervous system

description: Additional file 5: Table S2. The raw data used to produce FigureÂ 5D.
DOI: 10.6084/m9.figshare.6280046.v1
title: MOESM5 of A method for estimating relative changes in the synaptic density in Drosophila central nervous system

description: Additional file 5: Table S2. The raw data used to produce FigureÂ 5D.
DOI: 10.6084/m9.figshare.6280037
title: Additional file 3: of Research agenda-setting on cash programming for health and nutrition in humanitarian settings

description: â Evidence reviewsâ . This sheet lists details of the evidence reviews used to triangulate the identified research areas. (XLSX 67Â kb)
DOI: 10.6084/m9.figshare.6280037.v1
title: Additional file 3: of Research agenda-setting on cash programming for health and nutrition in humanitarian settings

description: â Evidence reviewsâ . This sheet lists details of the evidence reviews used to triangulate the identified research areas. (XLSX 67Â kb)
DOI: 10.6084/m9.figshare.6280034
title: MOESM4 of A method for estimating relative changes in the synaptic density in Drosophila central nervous system

description: Additional file 4: Table S1. The raw data used to produce FigureÂ 5C.
DOI: 10.6084/m9.figshare.6280034.v1
title: MOESM4 of A method for estimating relative changes in the synaptic density in Drosophila central nervous system

description: Additional file 4: Table S1. The raw data used to produce FigureÂ 5C.
DOI: 10.6084/m9.figshare.6280031
title: Additional file 2: of Lifestyle choices and mental health: a longitudinal survey with German and Chinese students

description: Matched_dataset. Complete data set of Chinese and German students. (XLS 1756 kb)
DOI: 10.6084/m9.figshare.6280031.v1
title: Additional file 2: of Lifestyle choices and mental health: a longitudinal survey with German and Chinese students

description: Matched_dataset. Complete data set of Chinese and German students. (XLS 1756 kb)
DOI: 10.6084/m9.figshare.6280022
title: Additional file 1: of Rehabilitation technologies and interventions for individuals with spinal cord injury: translational potential of current trends

description: Supplementary Info - Data Extraction Table JNER. (XLSX 91 kb)
DOI: 10.6084/m9.figshare.6280022.v1
title: Additional file 1: of Rehabilitation technologies and interventions for individuals with spinal cord injury: translational potential of current trends

description: Supplementary Info - Data Extraction Table JNER. (XLSX 91 kb)
DOI: 10.6084/m9.figshare.6280004
title: Additional file 1: of Microarray analysis of human keratinocytes from different anatomic sites reveals site-specific immune signaling and responses to human papillomavirus type 16 transfection

description: Figure S1. Heat map showing the relative gene expression level of keratins among five different stratified human keratinocytes with or without HPV16 transfection. To generate a keratins heat map. All keratin genes, KRT-1 to KRT-86 on the illumina human HT-12v4 expression array were aligned and assigned colors corresponding to the relative expression levels, comparing triplicate cultures of (Strid et al. 2009) types of normal human keratinocytes (NHK) with triplicate cultures from each type transfected with HPV16. KRT-12, − 18, − 20, − 22, KRT-25 to KRT-77, KRT-79, and KRT-82 to KRT-86 were excluded because all 10 triplicates had average expression levels that were below the 95th percentile of all genes on the chip. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6280004.v1
title: Additional file 1: of Microarray analysis of human keratinocytes from different anatomic sites reveals site-specific immune signaling and responses to human papillomavirus type 16 transfection

description: Figure S1. Heat map showing the relative gene expression level of keratins among five different stratified human keratinocytes with or without HPV16 transfection. To generate a keratins heat map. All keratin genes, KRT-1 to KRT-86 on the illumina human HT-12v4 expression array were aligned and assigned colors corresponding to the relative expression levels, comparing triplicate cultures of (Strid et al. 2009) types of normal human keratinocytes (NHK) with triplicate cultures from each type transfected with HPV16. KRT-12, − 18, − 20, − 22, KRT-25 to KRT-77, KRT-79, and KRT-82 to KRT-86 were excluded because all 10 triplicates had average expression levels that were below the 95th percentile of all genes on the chip. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6280001
title: Additional file 1: of Lifestyle choices and mental health: a longitudinal survey with German and Chinese students

description: Complete_dataset. Complete data set of Chinese and German students. (XLS 5085 kb)
DOI: 10.6084/m9.figshare.6279929
title: Additional file 9: of Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis

description: Table S9. Functionally-unannotated T. pallidum proteins [NÂ =â 8] modeled exclusively against PDB structures of unknown function. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6279929.v1
title: Additional file 9: of Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis

description: Table S9. Functionally-unannotated T. pallidum proteins [NÂ =â 8] modeled exclusively against PDB structures of unknown function. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6279914
title: Additional file 8: of Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis

description: Table S8. Functionally-unannotated T. pallidum proteins [NÂ =â 20] with Phyre2-based predicted functions using all confident model templates. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.6279914.v1
title: Additional file 8: of Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis

description: Table S8. Functionally-unannotated T. pallidum proteins [NÂ =â 20] with Phyre2-based predicted functions using all confident model templates. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.6279905
title: Additional file 1: of Use of health services among international migrant children – a systematic review

description: Table S1. Results of the studies with comparison group (n = 93). (XLSX 50 kb)
DOI: 10.6084/m9.figshare.6279905.v1
title: Additional file 1: of Use of health services among international migrant children – a systematic review

description: Table S1. Results of the studies with comparison group (n = 93). (XLSX 50 kb)
DOI: 10.6084/m9.figshare.6279899
title: Additional file 7: of Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis

description: Table S7. Functionally-unannotated T. pallidum proteins (N = 28) with top-ranking templates modeled against structures classified by the PDB as “unknown function”. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6279899.v1
title: Additional file 7: of Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis

description: Table S7. Functionally-unannotated T. pallidum proteins (N = 28) with top-ranking templates modeled against structures classified by the PDB as “unknown function”. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6279881
title: Additional file 6: of Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis

description: Table S6. Top-ranking Phyre2 model templates corresponding to all functionally-unannotated T. pallidum proteins (NÂ =â 175). (XLSX 40 kb)
DOI: 10.6084/m9.figshare.6279881.v1
title: Additional file 6: of Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis

description: Table S6. Top-ranking Phyre2 model templates corresponding to all functionally-unannotated T. pallidum proteins (NÂ =â 175). (XLSX 40 kb)
DOI: 10.6084/m9.figshare.6279866
title: Additional file 5: of Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis

description: Table S5. Comparison of T. pallidum primary and tertiary structure-based functional annotations using all confident Phyre2 model templates for each protein comparison. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.6279866.v1
title: Additional file 5: of Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis

description: Table S5. Comparison of T. pallidum primary and tertiary structure-based functional annotations using all confident Phyre2 model templates for each protein comparison. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.6279860
title: Additional file 1: of Laboratory studies on the oviposition stimuli of Culicoides stellifer (Diptera: Ceratopogonidae), a suspected vector of Orbiviruses in the United States

description: Table S1. Oviposition preferences of C. stellifer during ‘DI control vs DI control’ trials. Table S2. Oviposition preferences of C. stellifer during ‘Field water vs DI control’ trials. Table S3. Oviposition preferences of C. stellifer during ‘Sympatric mud vs DI control’ trials. Table S4. Oviposition preferences of C. stellifer during ‘WTD manure vs DI control’ trials. Table S5. Oviposition preferences of C. stellifer during ‘Sphagnum moss vs DI control’ trials. Table S6. Oviposition preferences of C. stellifer during ‘Combined substrates vs DI control’ trials. Table S7. Oviposition preferences of C. stellifer during ‘Sympatric mud + WTD manure vs Sympatric mud’ trials. Table S8. Oviposition preferences of C. stellifer during ‘Sympatric mud vs Allopatric mud’ trials. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.6279860.v1
title: Additional file 1: of Laboratory studies on the oviposition stimuli of Culicoides stellifer (Diptera: Ceratopogonidae), a suspected vector of Orbiviruses in the United States

description: Table S1. Oviposition preferences of C. stellifer during ‘DI control vs DI control’ trials. Table S2. Oviposition preferences of C. stellifer during ‘Field water vs DI control’ trials. Table S3. Oviposition preferences of C. stellifer during ‘Sympatric mud vs DI control’ trials. Table S4. Oviposition preferences of C. stellifer during ‘WTD manure vs DI control’ trials. Table S5. Oviposition preferences of C. stellifer during ‘Sphagnum moss vs DI control’ trials. Table S6. Oviposition preferences of C. stellifer during ‘Combined substrates vs DI control’ trials. Table S7. Oviposition preferences of C. stellifer during ‘Sympatric mud + WTD manure vs Sympatric mud’ trials. Table S8. Oviposition preferences of C. stellifer during ‘Sympatric mud vs Allopatric mud’ trials. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.6279857
title: Additional file 4: of Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis

description: Table S4. Comparison of T. pallidum primary and tertiary structure-based functional annotations using only the top-ranked Phyre2 model template for each protein comparison. (XLSX 33 kb)