cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1353990.v2
title: Public Transport Journey Data

description: This file contains the public transport journey data (modes, distances, durations and emissions) as used in "Multi-Modal Employee Routing with Time Windows in an Urban Environment" by Urqhart, Hart and Judson in Proceedings of GECCO 2015. The file is designed to be loaded into a mySQL database. The problem instances are form of comma separated variable files, they are best viewed in something like Excel. Locations are given as UK postcodes which can be used with the mySQL database provided. If you need to geolocate the postcodes use the freely available UK postcode data from sites such as doogal.co.uk
DOI: 10.6084/m9.figshare.27242670.v1
title: How is ChatGPT acknowledged in academic publications?

description: The shared data provides a categorisation of the acknowledgments of ChatGPT in 1,759 academic publications indexed in Scopus and Web of Science up to 20 August 2024 by author.
DOI: 10.6084/m9.figshare.28882406.v1
title: The genome assembly results and annotations result of <b><i>Hyotissa hyotis</i></b>

description: <i>Hyotissa hyotis</i>, a common bivalve inhabitant of tropical and subtropical coastal waters, holds significant ecological and economic importance due to its shell characteristics, rapid growth, and high-quality adductor muscle. However, the lack of high-quality genome has impeded the genetic investigations and artificial breeding of this species. In this study, we provided the first chromosomal-level and haplotype-resolved assemblies for the <i>H. hyotis</i> (2n = 20) by combining HiFi sequencing, Hi-C sequencing, and short-reads RNA-seq data. The haplotype-resolved assembly was 3.39 GB in size, achieving to 20 chromosomes with anchor ratio of 96.69%. The genome size was 1,639.90 and 1,643.23 Mb for haplotype A and B genomes respectively, with the annotated protein-coding genes of 28,720 and 29,003. Through the BUSCO evaluation results, the assembly and annotation results exhibited the completeness value of 94.6 and 94.0 for HapA, while 94.1 and 93.0% for HapB. These high-quality assemblies will provide valuable resource for future functional analysis, evolution and genetic improvement for <i>H. </i><i>hyotis</i>.
DOI: 10.6084/m9.figshare.20488905.v1
title: Human fall vibration data.csv

description: It is the physical human fall vibration data, collected by EPH-V11 vibration sensor.
DOI: 10.6084/m9.figshare.27367410.v2
title: leopard cats in China

description: This item contains R code and data used in the manuscript of "Building <b>robust species distribution models for a small carnivore (leopard cat) to inform its conservation in China".</b>
DOI: 10.4121/uuid:49eb74aa-32d0-4e4f-a180-4d9179adc7e8
title: Weather data Schiphol 2009-2018 and energy demand for a case study building.

description: This document contains the description of the dataset ‘weather data Schiphol 2009-2018 and energy demand for a case study building’ and a description of the input parameters used to create the data. For this dataset the weather data for Schiphol for the years 2009 to 2018 and the TRNSYS reference year are simulated in TRNSYS 17 and the energy demand for a case study building for these years is calculated. The results include the weather data regarding temperature and solar radiation for different orientations, and the heating and cooling demand for a case study building. Also a document with a description of the dataset is attached.
DOI: 10.6084/m9.figshare.14132270.v1
title: bd_AML_whole_init_300.csv

description: initial dataset for active learning
DOI: 10.6084/m9.figshare.5125858.v1
title: Supplementary Material for: The Brain of the Horse: Weight and Cephalization Quotients

description: The horse is a common domestic animal whose anatomy has been studied since the XVI century. However, a modern neuroanatomy of this species does not exist and most of the data utilized in textbooks and reviews derive from single specimens or relatively old literature. Here, we report information on the brain of <i>Equus caballus</i> obtained by sampling 131 horses, including brain weight (as a whole and subdivided into its constituents), encephalization quotient (EQ), and cerebellar quotient (CQ), and comparisons with what is known about other relevant species. The mean weight of the fresh brains in our experimental series was 598.63 g (SEM ± 7.65), with a mean body weight of 514.12 kg (SEM ± 15.42). The EQ was 0.78 and the CQ was 0.841. The data we obtained indicate that the horse possesses a large, convoluted brain, with a weight similar to that of other hoofed species of like mass. However, the shape of the brain, the noteworthy folding of the neocortex, and the peculiar longitudinal distribution of the gyri suggest an evolutionary specificity at least partially separate from that of the Cetartiodactyla (even-toed mammals and cetaceans) with whom Perissodactyla (odd-toed mammals) are often grouped.
DOI: 10.6084/m9.figshare.21213077.v1
title: Emotional Intelligence, Intelligence and Social Skills in Different Areas of Work and Leadership

description: Abstract The organizational environment has an ever-increasing need for psychological constructs such as Emotional Intelligence (EI), Social Skills (SS) and Intelligence (G), despite the lack of empirical scientific research on those variables with regard to the working environment, specially EI and SS. Thus, the goal of the present study was to measure such variables presented by professionals in different areas and leadership roles in the organizational context. There were 120 participants, from four major areas in the organization, both leaders and non-leaders. The main results showed no significant difference in EI between the different areas, lower EI scores for leaders when compared to those being led and no difference in G and in SS general score between leaders and non-leaders. This contributes to reflections on the conduction of current selection processes and promotion criteria in organizations.
DOI: 10.6084/m9.figshare.22269481.v1
title: agri_wheat.tif

description: wheat straw map
DOI: 10.6084/m9.figshare.25256308.v1
title: Communications Biology_Source data for main figures_Tamura_et_al

description: Source data for main figures in the manuscript entitled "Synthetic phage-based approach for sensitive and specific detection of <i>Escherichia coli</i> O157".
DOI: 10.6084/m9.figshare.25265239.v2
title: A total of 109444 high-quality SNPs covering the whole rice genome of 178 commercial rice cultivars.zip

description: A total of 109444 high-quality SNPs covering the whole rice genome of 178 commercial rice cultivars. GWAS statistics for sheath blight resistance.
DOI: 10.6084/m9.figshare.28658699.v1
title: An integrated transcriptome, metabolome, and microbiome dataset of Populus under nutrient deficiency conditions

description: The rhizosphere microbiota recruited by plants contributes significantly to maintaining host productivity and resisting stress. However, the genetic mechanisms by which plants regulate this recruitment process remain largely unclear. Here, we generated a comprehensive dataset, including 27 root transcriptomes, 27 root metabolomes, and 54 bulk or rhizosphere soil 16S rRNA amplicons across nine poplar species from four sections grown in nutrient deficiency natural soil, along witheleven growth phenotype data. We provided a thoroughdescription of thisdataset, followed by a comprehensiveco-expression network analysis example that broke down the wall ofthe four-way relationship between plant gene-metabolite-microbe-phenotype, thusidentifyingthelinks between plant gene expression, metabolite accumulation, growth behavior, and rhizosphere microbiome variationunder nutrient deficiency conditions. Overall, this dataset enhances our understanding of plant and microbe interactions, offering valuable strategies and novel insights for resolving how plants regulate rhizosphere microbialcompositions and functions, thereby improving host fitness, which will benefit future research.
DOI: 10.6084/m9.figshare.20231733.v1
title: trait_data.csv

description: *.csv file with trait data for Brazilian reptile species used in the paper "ASSESSING BRAZILIAN REPTILES’ ROAD-KILL RISKS USING TRAIT-BASED MODELS".
DOI: 10.6084/m9.figshare.21785450.v1
title: Low-cost real-time sensors - Randolph Mill Rd Site

description: This dataset contains the water depths at the Randolph Mill Road, Putnam County, TN, by the USGS streamgauge and TNTech Low-cost real-time water level sensor. The second spreadsheet is a summary document listing the event-based comparative analysis. An accompanying Jupyter Notebook containing the code to repeat the comparative analysis is provided here.
DOI: 10.6084/m9.figshare.23248259.v1
title: Source Data

description: Source data for the manuscript: The exit of nanoparticles from solid tumours https://www.nature.com/articles/s41563-023-01630-0
DOI: 10.6084/m9.figshare.25712517.v1
title: Supplimentary Table S1.docx

description: Table S1. Model selection summary for generalized linear models with landscape variables and human disturbances. ‘<i>K</i>’ is the number of parameters in the model. AICc is Akaike Information Criterion, ΔAIC<sub>c</sub> is the difference in AICc. ‘<i>w</i><sub><em>i</em></sub>’ is a measure of relative support for each model.* global = WildPig + DistBigStr + Poacher + DistVillage + NDVIval500m + ForestCover + Dog + Domscattle
DOI: 10.6084/m9.figshare.28490672.v1
title: Additional file 3 of Single-cell multi-omics analysis identifies SPP1+ macrophages as key drivers of ferroptosis-mediated fibrosis in ligamentum flavum hypertrophy

description: Additional file 3: table S3. Clinical information of 26 donors involved in this study.
DOI: 10.6084/m9.figshare.5123545.v1
title: Supplementary Material for: Synthetic Immunomodulatory Peptide IDR-1002 Enhances Monocyte Migration and Adhesion on Fibronectin

description: Regulation of the immune system by immunomodulatory agents, such as the synthetic innate defense regulator (IDR) peptides, has been proposed as a potential strategy to strengthen host immune responses against infection. IDR peptides confer protection in vivo against a range of bacterial infections and have been developed as components of single-dose vaccine adjuvants due to their ability to modulate innate immunity, correlating with an increased recruitment of monocytes to sites of infection or immunization. However, the mechanisms by which IDR peptides augment monocyte recruitment remain poorly defined. Anti-infective peptide IDR-1002 was demonstrated here to lack direct monocyte chemoattractive activity yet enhance, by up to 5-fold, the ability of human monocytes to migrate on fibronectin towards chemokines. This effect correlated with an increased adhesion of monocytes and THP-1 cells to fibronectin by IDR-1002 and other IDR peptides and the adhesion of THP-1 cells to fibronectin occurred in a β<sub>1</sub>-integrin-dependent manner, corresponding with an increased activation of β<sub>1</sub>-integrins and the phosphoinositide 3-kinase (PI3K)-Akt pathway. PI3K- and Akt-specific inhibitors abrogated IDR-1002-induced adhesion and activation of β<sub>1</sub>-integrins, whereas p38 and MEK1 inhibitors did not affect, or moderately inhibited, adhesion, respectively. Furthermore, IDR-1002 enhancement of monocyte migration towards chemokines and activation of β<sub>1</sub>-integrins was abrogated in the presence of PI3K- and Akt-specific inhibitors. In summary, IDR-1002 enhanced monocyte migration on fibronectin through promotion of β<sub>1</sub>-integrin-mediated interactions regulated by the PI3K-Akt pathway, revealing a mechanism by which IDR-1002 promotes monocyte recruitment.
DOI: 10.6084/m9.figshare.16553214.v1
title: Supplementary Material for: Continuous Deep Sedation until Death in Neonates and Infants in Flanders: A Post-Mortem Survey

description: <b><i>Background:</i></b> The use of analgesics and sedatives to alleviate pain and discomfort is common in end-of-life care in neonates and infants. However, to what extent those drugs are used in that context with the specific aim of bringing the infant in a state of continuous deep sedation (CDS) is currently unknown. <b><i>Methods:</i></b> We performed a nationwide mortality follow-back survey based on all deaths under the age of 1 over a period of 16 months in Flanders, Belgium. Data on CDS were linked to sociodemographic information from death certificates. Physicians completed an anonymous questionnaire. Questions measured whether CDS preceded death, and which clinical characteristics were associated with the sedation (e.g., type of drugs used and the duration of sedation). <b><i>Results:</i></b> The response rate was 83% (229/276). In 39% of all deceased neonates and infants, death was preceded by CDS. Physicians used a combination of morphine and benzodiazepines in 53%, or morphine alone in 45% of all sedation cases in order to continuously and deeply sedate the infant. In 89% of cases, death occurred within 1 week after sedation was begun, and in 92% of cases, artificial nutrition and hydration were administered until death. In 49% of cases there was no intention to hasten death, and in 40% of cases, the possibility of hastening was taken into account. <b><i>Conclusions:</i></b> CDS precedes about 2 in 5 neonatal and infant deaths. Guidelines for CDS in this age group are non-existent and it is unclear whether the same recommendations as in the adult population apply and can be considered a good practice.
DOI: 10.6084/m9.figshare.1198561.v1
title: Insect Count in Quadrant

description: The data for " Insect Count in Quadrant " was collected on Friday October 3 , 2014 from 3:00 to 3:50 pm at Woodlot in York University Keele Campus in Toronto Ontario. The weather was rainy and the sky was covered with clouds not allowing much light to the ground. The wind was not so strong and the temperature was around 15 degrees celcius. A quadrat of 1 meters squared was placed randomly in the woodlot on the ground. The number of individual insects , the total number of species and the naming of the taxanomic groups that were found in the quadrat were observed and recorded by the researcher. Nine repetitions of quadrat sampling were made giving a total of ten samplings. Three of the quadrat sampling were on the edge of the woodlot ( dim light condition) , and other three were in the middle and a more open area in the woodlot ( had more light condition) and the remaining ones were near two big trees. Group members who did the samplings are : Hasan Hamam , Angela Joseph. Other Group members did the other data sets.
DOI: 10.6084/m9.figshare.14153312.v2
title: Dataset of article: "Associations of novel 24-hour accelerometer-derived metrics with adiposity in children and adolescents"

description: The manuscript has been published in Environmental Health and Preventive Medicine journal.<br>
DOI: 10.6084/m9.figshare.25188116.v1
title: Reconfigurable spin current transmission and magnon–magnon coupling in hybrid ferrimagnetic insulators.xlsx

description: This is the repository for the paper "<b>Reconfigurable spin current transmission and magnon–magnon coupling in hybrid ferrimagnetic insulators</b>". It includes the source data that support the findings of this study.
DOI: 10.6084/m9.figshare.21680105.v1
title: Supplementary Material for: Effect of Fludrocortisone on Intradialytic Hypotension: An Open-Label, Randomized, Crossover Study

description: <b><i>Introduction:</i></b> Intradialytic hypotension (IDH) is an important complication during chronic hemodialysis due to its adverse cardiovascular and hemodialysis outcomes. Case reports have demonstrated that administration of fludrocortisone before undergoing hemodialysis might increase intradialytic blood pressure. This study is a randomized crossover study aiming to evaluate the intradialytic hemodynamic effects of fludrocortisone. <b><i>Material and Methods:</i></b> A randomized, controlled two-period crossover trial was conducted at Lampang Hospital in stable chronic hemodialysis patients who experienced IDH &gt;30% in their sessions during the past 3 months. All participants have randomly received a single dose of 0.2-mg fludrocortisone 30 min before each hemodialysis session, or had no treatment for 4 weeks. After a 2-week washout period, the participants were then switched to the other treatment for 4 weeks. The primary outcome was the mean lowest intradialytic mean arterial pressure (MAP) during the hemodialysis session. <b><i>Results:</i></b> A total of 17 patients were recruited with a mean age of 61.7 ± 14.8 years. By analysis of crossover design, the mean lowest intradialytic MAP was not different between receiving fludrocortisone or with no treatment (76.1 ± 12.5 vs. 73.9 ± 11.5 mm Hg, <i>p</i> for treatment effect = 0.331, <i>p</i> for period effect = 0.855, <i>p</i> for sequence effect = 0.870). There was no difference in the incidence of IDH between the two groups (34.4% in fludrocortisone vs. 42.7% in no treatment, <i>p</i> = 0.137). However, in diabetic patients and patients with residual kidney function, the incidence of IDH was significantly lower when receiving fludrocortisone (30.8 vs. 52.6%, <i>p</i> &lt; 0.001, and 27.6 vs. 74.3%, <i>p</i> &lt; 0.001, respectively). <b><i>Conclusions:</i></b> In chronic hemodialysis patients who had IDH, fludrocortisone administration did not improve intradialytic hemodynamics and did not decrease the incidence of IDH.
DOI: 10.6084/m9.figshare.5123767.v1
title: Supplementary Material for: Natural and Orthogonal Interaction Framework for Modeling Gene-Environment Interactions with Application to Lung Cancer

description: <b><i>Objectives:</i></b> We aimed at extending the Natural and Orthogonal Interaction (NOIA) framework, developed for modeling gene-gene interactions in the analysis of quantitative traits, to allow for reduced genetic models, dichotomous traits, and gene-environment interactions. We evaluate the performance of the NOIA statistical models using simulated data and lung cancer data. <b><i>Methods:</i></b> The NOIA statistical models are developed for additive, dominant, and recessive genetic models as well as for a binary environmental exposure. Using the Kronecker product rule, a NOIA statistical model is built to model gene-environment interactions. By treating the genotypic values as the logarithm of odds, the NOIA statistical models are extended to the analysis of case-control data. <b><i>Results:</i></b> Our simulations showed that power for testing associations while allowing for interaction using the NOIA statistical model is much higher than using functional models for most of the scenarios we simulated. When applied to lung cancer data, much smaller p values were obtained using the NOIA statistical model for either the main effects or the SNP-smoking interactions for some of the SNPs tested. <b><i>Conclusion:</i></b> The NOIA statistical models are usually more powerful than the functional models in detecting main effects and interaction effects for both quantitative traits and binary traits.
DOI: 10.6084/m9.figshare.26591024.v1
title: Additional file 1 of Does government health insurance protect households from out of pocket expenditure and distress financing for caesarean and non-caesarean institutional deliveries in India? Findings from the national family health survey (2019-21)

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.5970925.v5
title: USPTO patents data

description: A patent is a set of exclusive rights granted to an inventor by a sovereign state for a solution, be it a product or a process, for a solution to a particular technological problem. The United States Patent and Trademark Office (USPTO) is part of the US department of Commerce that provides patents to businesses and inventors for their inventions in addition to registration of products and intellectual property identification. Each year, the USPTO grants over 150,000 patents to individuals and companies all over the world. As of December 2011, 8,743,423 patents have been issued and 16,020,302 applications have been received. The USPTO patents are accepted in electronic form and are filed as PDF documents. However, the indexing is not perfect and it is cumbersome to search through the PDF documents. Additionally, Google has also made all the patents available for download in XML format, albeit only from the years 2002 to 2015. Thus, we converted this bulk of data (spanning 13 years) from XML to RDF to conform to the Linked Data principles.
DOI: 10.6084/m9.figshare.25497445.v3
title: <b>A deep</b><b> </b><b>learning framework </b><b>for </b><b><i>in silico</i></b><b> screening of anticancer drugs at the single-cell level</b>

description: Tumor heterogeneity plays a pivotal role in tumor progression and resistance to clinical treatment. Single-cell RNA sequencing (scRNA-seq) enables us to explore heterogeneity within a cell population and identify rare cell types, thereby improving our design of targeted therapeutic strategies. Here, we use a pan-cancer and pan-tissue single-cell transcriptional landscape to reveal heterogeneous expression patterns within malignant cells, precancerous cells, as well as cancer-associated stromal and endothelial cells. We introduce a deep learning framework named Shennong for <i>in silico</i> screening of anticancer drugs for targeting each of the landscape cell clusters. Utilizing Shennong, we could predict individual cell responses to pharmacologic compounds, evaluate drug candidates’ tissue damaging effects, and investigate their corresponding action mechanisms. Prioritized compounds in Shennong’s prediction results include FDA-approved drugs currently undergoing clinical trials for new indications, as well as drug candidates reporting anti-tumor activity. Furthermore, the tissue damaging effect prediction aligns with documented injuries and terminated discovery events. This robust and explainable framework has the potential to accelerate the drug discovery process and enhance the accuracy and efficiency of drug screening.
DOI: 10.6084/m9.figshare.1436115.v1
title: Data associated with "Sulfur Isotope Effects of Dissimilatory Sulfite Reductase"

description: Data files associated with Leavitt WD, Bradley AS, Santos AA, Pereira IAC and Johnston DT (2015) <strong>Sulfur Isotope Effects of Dissimilatory Sulfite Reductase</strong>. Front. Microbiol. 6:1392. doi: 10.3389/fmicb.2015.01392 There are four files in this fileset:1. <b>Dvulgaris_DsrAB.xlsx</b>Raw data and model output for <i>D vulgaris</i> experiment 2. <b>Afulgidis_DsrAB.xlsx</b>Raw data for <i>A. fulgidis</i> experiment 3. <b>Compilation_of_S_isotope_fractionation.xlsx</b>Compilation of S isotope fractionations from literature4. <b>Summary_stats_S_fractionation.xlsx</b>Statistics of literature S isotope compilation<br>