cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7659188
title: Additional file 5: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: Budesonide-induced genes in A549, BEAS-2B or HBE cells. The 410 genes that were significantly induced ≥2 fold (P ≤ 0.05) by budesonide at 6 h in A549 (A), BEAS-2B (B), or HBE (H) cells are listed. Last two columns (I and J), indicate the gene groups for each gene based on the induction thresholds, ≥2 fold (P ≤ 0.05) or ≥ 1.25, as shown in Fig. 3. The 52 genes that were selected for qPCR validation are colored red. Genes are sorted alphabetically according to their official gene symbol. (XLSX 45 kb)
DOI: 10.7284/104786
title: Speedlog data collected during research cruise CH0511 using a Furuno DS-80 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7659185
title: Additional file 16: of Conserved regulation of RNA processing in somatic cell reprogramming

description: Raw data. Raw data values for relevant experiments are summarized in an XLSX spreadsheet. Data from each figure panel is presented in a single sheet. Labels correspond to those used in the figures. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.7659185.v1
title: Additional file 16: of Conserved regulation of RNA processing in somatic cell reprogramming

description: Raw data. Raw data values for relevant experiments are summarized in an XLSX spreadsheet. Data from each figure panel is presented in a single sheet. Labels correspond to those used in the figures. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.7659188.v1
title: Additional file 5: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: Budesonide-induced genes in A549, BEAS-2B or HBE cells. The 410 genes that were significantly induced ≥2 fold (P ≤ 0.05) by budesonide at 6 h in A549 (A), BEAS-2B (B), or HBE (H) cells are listed. Last two columns (I and J), indicate the gene groups for each gene based on the induction thresholds, ≥2 fold (P ≤ 0.05) or ≥ 1.25, as shown in Fig. 3. The 52 genes that were selected for qPCR validation are colored red. Genes are sorted alphabetically according to their official gene symbol. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.7659173
title: Additional file 3: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: Budesonide-modulated genes at different times in BEAS-2B cells. The 820 genes showing significant induction (fold ≥2, P ≤ 0.05), or repression (fold ≤0.5, P ≤ 0.05), by budesonide (300 nM), compared to control, in BEAS-2B cells at 1, 2, 6 or 18 h are listed along with the fold change and P values at each time. The time at which each gene shows the greatest absolute log2 fold change is indicated. Genes are sorted alphabetically according to their official gene symbol. (XLSX 92 kb)
DOI: 10.7284/107803
title: Anemometer data collected during research cruise CH0512 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7659173.v1
title: Additional file 3: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: Budesonide-modulated genes at different times in BEAS-2B cells. The 820 genes showing significant induction (fold ≥2, P ≤ 0.05), or repression (fold ≤0.5, P ≤ 0.05), by budesonide (300 nM), compared to control, in BEAS-2B cells at 1, 2, 6 or 18 h are listed along with the fold change and P values at each time. The time at which each gene shows the greatest absolute log2 fold change is indicated. Genes are sorted alphabetically according to their official gene symbol. (XLSX 92 kb)
DOI: 10.6084/m9.figshare.7659161
title: Additional file 13: of Conserved regulation of RNA processing in somatic cell reprogramming

description: Top ranked alternative splicing events for human and mouse reprogramming. The file contains an XLSX spreadsheet with information on the 100 top ranked alternative splicing events derived from Ensembl gene annotations (release 84) [70], as identified in a set of endpoint-to-endpoint comparisons of human (first tab) or mouse (second tab) somatic cell reprogramming experiments. Splice sites were ranked according to mean z-scores. The unique shorthand event identifiers (Figure S9), as well as the corresponding SUPPA event identifiers, Ensembl gene identifiers, gene symbols and SUPPA event types are indicated. (XLSX 17 kb)
DOI: 10.7284/107804
title: Anemometer data collected during research cruise CH0512 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7659149
title: Additional file 17: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: KEGG pathways enriched in budesonide-repressed genes in airway epithelial cell variants and tissue. Budesonide-repressed genes ≤0.8 fold (P ≤ 0.05) in A549 (1033 genes), BEAS-2B (1687 genes), HBE (923 genes), and airway tissue (341 genes) were subjected to KEGG pathway analysis using DAVID. KEGG pathways that were significantly enriched (EASE score ≤ 0.1) with each list and represented by at least 5 genes are listed. The terms that were significantly enriched following family-wide false discovery rate correction (Benjamini ≤0.05) are colored red. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.7659149.v1
title: Additional file 17: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: KEGG pathways enriched in budesonide-repressed genes in airway epithelial cell variants and tissue. Budesonide-repressed genes ≤0.8 fold (P ≤ 0.05) in A549 (1033 genes), BEAS-2B (1687 genes), HBE (923 genes), and airway tissue (341 genes) were subjected to KEGG pathway analysis using DAVID. KEGG pathways that were significantly enriched (EASE score ≤ 0.1) with each list and represented by at least 5 genes are listed. The terms that were significantly enriched following family-wide false discovery rate correction (Benjamini ≤0.05) are colored red. (XLSX 30 kb)
DOI: 10.7284/107798
title: Fluorometer data collected during research cruise CH0512 using a Turner 10-AU instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7659143
title: Additional file 16: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: KEGG pathways enriched in budesonide-induced genes in airway epithelial cell variants and tissue. Budesonide-induced genes ≥1.25 fold (P ≤ 0.05) in A549 (904 genes), BEAS-2B (1504 genes), HBE (757 genes), and airway tissue (553 genes) were subjected to KEGG pathway analysis using DAVID. KEGG pathways that were significantly enriched (EASE score ≤ 0.1) with each list and represented by at least 5 genes are listed. The terms that were significantly enriched following family-wide false discovery rate correction (Benjamini ≤0.05) are colored red. (XLSX 30 kb)
DOI: 10.7284/107805
title: GNSS (Global Navigation Satellite System) data collected during research cruise CH0512 using a Northstar 952X instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7659143.v1
title: Additional file 16: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: KEGG pathways enriched in budesonide-induced genes in airway epithelial cell variants and tissue. Budesonide-induced genes ≥1.25 fold (P ≤ 0.05) in A549 (904 genes), BEAS-2B (1504 genes), HBE (757 genes), and airway tissue (553 genes) were subjected to KEGG pathway analysis using DAVID. KEGG pathways that were significantly enriched (EASE score ≤ 0.1) with each list and represented by at least 5 genes are listed. The terms that were significantly enriched following family-wide false discovery rate correction (Benjamini ≤0.05) are colored red. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.7659134
title: Additional file 15: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: Pathways enriched in budesonide-regulated genes in airway epithelial cell variants and tissue were identified by Ingenuity Pathway Analysis. Budesonide-regulated genes ≥1.25 fold, or ≤ 0.8 fold (P ≤ 0.05), in A549 (1973 genes), BEAS-2B (3191 genes), HBE (1980 genes), and airway tissue (894 genes) were subjected to pathway analysis using Ingenuity Pathway Analysis (IPA). Pathways that were significantly enriched (−log P value ≥1.3; i.e. P ≤ 0.05) with any of the gene lists are shown. Enrichment (−log P value) is shown in purple and z-score is shown in red for positive values (activation) or in blue for negative values (inhibition). (XLSX 54 kb)
DOI: 10.7284/107802
title: Gyrocompass data collected during research cruise CH0512 using a Sperry MK-37 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7659125
title: Additional file 14: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: Budesonide-repressed genes in airway epithelial cell variants and tissue. The 442 genes that were significantly repressed ≤0.5 fold (P ≤ 0.05) by budesonide in A549 (A), BEAS-2B (B), HBE (H), or airway tissue biopsies (T) are listed. The last two columns (K and L), indicate the gene groups for each gene based on the induction thresholds, ≤0.5 fold (P ≤ 0.05) or ≤ 0.8. Genes are sorted alphabetically according to their official gene symbol. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.7659125.v1
title: Additional file 14: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: Budesonide-repressed genes in airway epithelial cell variants and tissue. The 442 genes that were significantly repressed ≤0.5 fold (P ≤ 0.05) by budesonide in A549 (A), BEAS-2B (B), HBE (H), or airway tissue biopsies (T) are listed. The last two columns (K and L), indicate the gene groups for each gene based on the induction thresholds, ≤0.5 fold (P ≤ 0.05) or ≤ 0.8. Genes are sorted alphabetically according to their official gene symbol. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.7659134.v1
title: Additional file 15: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: Pathways enriched in budesonide-regulated genes in airway epithelial cell variants and tissue were identified by Ingenuity Pathway Analysis. Budesonide-regulated genes ≥1.25 fold, or ≤ 0.8 fold (P ≤ 0.05), in A549 (1973 genes), BEAS-2B (3191 genes), HBE (1980 genes), and airway tissue (894 genes) were subjected to pathway analysis using Ingenuity Pathway Analysis (IPA). Pathways that were significantly enriched (−log P value ≥1.3; i.e. P ≤ 0.05) with any of the gene lists are shown. Enrichment (−log P value) is shown in purple and z-score is shown in red for positive values (activation) or in blue for negative values (inhibition). (XLSX 54 kb)
DOI: 10.7284/107799
title: Meteorological Station data collected during research cruise CH0512 using a RM Young 26700 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7659116
title: Additional file 13: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: Budesonide-induced genes in airway epithelial cell variants and tissue. The 451 genes that were significantly induced ≥2 fold (P ≤ 0.05) by budesonide in A549 (A), BEAS-2B (B), HBE (H), or airway tissue biopsies (T) are listed. The last two columns (K and L), indicate the gene groups for each gene based on the induction thresholds, ≥2 fold (P ≤ 0.05) or ≥ 1.25. Genes are sorted alphabetically according to their official gene symbol. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.7659116.v1
title: Additional file 13: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: Budesonide-induced genes in airway epithelial cell variants and tissue. The 451 genes that were significantly induced ≥2 fold (P ≤ 0.05) by budesonide in A549 (A), BEAS-2B (B), HBE (H), or airway tissue biopsies (T) are listed. The last two columns (K and L), indicate the gene groups for each gene based on the induction thresholds, ≥2 fold (P ≤ 0.05) or ≥ 1.25. Genes are sorted alphabetically according to their official gene symbol. (XLSX 55 kb)
DOI: 10.7284/107801
title: Singlebeam Echosounder data collected during research cruise CH0512 using a Furuno FCV-292 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107800
title: Speedlog data collected during research cruise CH0512 using a Furuno DS-80 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7659095
title: Additional file 11: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: GO terms associated with budesonide-repressed genes in A549, BEAS-2B, and HBE cells using the lower stringency cut-off. Budesonide-repressed genes, as defined in Fig. 5c, in A549 (211 genes), BEAS-2B (307 genes), and HBE (243 genes) were subjected GO analysis using DAVID. Biological processes (BP) and molecular function (MF) terms that were significantly enriched (EASE score ≤ 0.1) with each list and represented by at least 5 genes were listed. The terms that are significantly enriched following family-wide false discovery rate correction (Benjamini ≤0.05) are colored red. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.7659089
title: Additional file 10: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: GO terms associated with budesonide-repressed genes (≤0.5 fold, P ≤ 0.05) in A549, BEAS-2B, and HBE cells. Budesonide-repressed genes ≤0.5 fold (P ≤ 0.05) in A549 (108 genes), BEAS-2B (236 genes), and HBE (146 genes) were subjected to GO analysis using DAVID. Biological processes (BP) and molecular function (MF) terms that were significantly enriched (EASE score ≤ 0.1) with each list and represented by at least 5 genes are listed. The terms that were significantly enriched following family-wide false discovery rate correction (Benjamini ≤0.05) are colored red. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.7659095.v1
title: Additional file 11: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: GO terms associated with budesonide-repressed genes in A549, BEAS-2B, and HBE cells using the lower stringency cut-off. Budesonide-repressed genes, as defined in Fig. 5c, in A549 (211 genes), BEAS-2B (307 genes), and HBE (243 genes) were subjected GO analysis using DAVID. Biological processes (BP) and molecular function (MF) terms that were significantly enriched (EASE score ≤ 0.1) with each list and represented by at least 5 genes were listed. The terms that are significantly enriched following family-wide false discovery rate correction (Benjamini ≤0.05) are colored red. (XLSX 46 kb)
DOI: 10.7284/102512
title: Winch data collected during research cruise CH0609 using a Markey DUSH-5 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7659089.v1
title: Additional file 10: of Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells

description: GO terms associated with budesonide-repressed genes (≤0.5 fold, P ≤ 0.05) in A549, BEAS-2B, and HBE cells. Budesonide-repressed genes ≤0.5 fold (P ≤ 0.05) in A549 (108 genes), BEAS-2B (236 genes), and HBE (146 genes) were subjected to GO analysis using DAVID. Biological processes (BP) and molecular function (MF) terms that were significantly enriched (EASE score ≤ 0.1) with each list and represented by at least 5 genes are listed. The terms that were significantly enriched following family-wide false discovery rate correction (Benjamini ≤0.05) are colored red. (XLSX 32 kb)
DOI: 10.7284/102989
title: Anemometer data collected during research cruise CH0610 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102990
title: Anemometer data collected during research cruise CH0610 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102461
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise CH0610 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102853
title: GNSS (Global Navigation Satellite System) data collected during research cruise CH0610 using a Northstar 952X instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102521
title: Gyrocompass data collected during research cruise CH0610 using a Sperry MK-37 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102795
title: Meteorological Station data collected during research cruise CH0610 using a RM Young 26700 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102178
title: Singlebeam Echosounder data collected during research cruise CH0610 using a Knudsen 3260 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7658597
title: Data and code for: Morphology, ecology, and biogeography of independent origins of cleaning behavior around the world

description: Code and data accompanying our 2019 manuscript submission to Integrative and Comparative Biology, entitled "Morphology, ecology, and biogeography of independent origins of cleaning behavior around the world".<br><br>From Symposium S7, entitled “Comparative Evolutionary Morphology and Biomechanics in the Era of Big Data”, presented at the annual meeting of the Society for Integrative and Comparative Biology, January 6, 2019 in Tampa, Florida, USA.<br>
DOI: 10.7284/102520
title: Singlebeam Echosounder data collected during research cruise CH0610 using a Furuno FCV-292 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102519
title: Speedlog data collected during research cruise CH0610 using a Furuno DS-80 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/102516
title: Winch data collected during research cruise CH0610 using a Markey DUSH-5 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104798
title: Anemometer data collected during research cruise CH0611 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7658420
title: Analysis of Center of Mass Acceleration and Muscle Activation in Hemiplegic Paralysis during Standing

description: This dataset includes the data of EMD-DFA study.
DOI: 10.6084/m9.figshare.7658420.v1
title: Analysis of Center of Mass Acceleration and Muscle Activation in Hemiplegic Paralysis during Standing

description: This dataset includes the data of EMD-DFA study.
DOI: 10.7284/104799
title: Anemometer data collected during research cruise CH0611 using a RM Young 05103 instrument system onboard the platform RV Cape Hatteras

description: Original (unprocessed) data collected during a Field_expedition