cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7245005
title: Survival of Escherichia coli O157:H7 and Staphylococcus aureus during the fermentation and storage of kefir

description: Abstract The survival of Escherichia coli O157: H7 and Staphylococcus aureus, which are foodborne pathogens was investigated during fermentation and storage of kefir. The kefir grains were inoculated with 5% of the whole fat UHT cow milk and the E. coli O157: H7 and S. aureus cultures were added separately to give 105 cfu mL-1 and left to incubate at 22 °C for 24 hours at first stage. During the incubation, the bacteria and yeast counts, pH and titratable acidity amounts were determined. In the second stage, E. coli O157: H7 and S. aureus cultures were separately added to produce 105 cfu mL -1 of kefir and was stocked at 5 °C for 3 days. Every day samples were taken and the same tests were done. During fermentation, in all samples the initial while TA was 0.14%, the fermentation was 1.0% and 1.01% at the end. The kefir samples were pH 4.5 at the end of the 3 day period of storage. S.aureus was significantly inhibited while E.coli was not inhibited during the fermentation process. During storage, E. coli O157: H7 and S. aureus were inhibited within 2 days. The kefir has the quality of being a healthy product during fermentation and storage.
DOI: 10.6084/m9.figshare.7245008
title: Diversity of scale insects (Hemiptera, Coccomorpha) in ten varieties of olive trees (Olea europaea L.) in Southern Brazil

description: Abstract Olive production (Olea europaea L.) is a recent activity in Brazil and studies on the adaptability of olive trees varieties in the States are required. One of the problems that can hamper the development of olive trees is the incidence of pests, such as scale insects (Hemiptera, Coccomorpha). In this study, the associated scale insect species were found in ten varieties in an olive grove located at the Research Center of the Serra do Sudeste Region (30º33’15”S, 52º23’45”W) in Brazil. The surveys were carried out twice in each season (2013-2014). Six species of armored scale insect (Diaspididae) and two soft scales (Coccidae) were determined. Saissetia oleae (Coccidae) with 88.15% and Aspidiotus nerii (Diaspididae) with 5.85% occurred in all varieties of olive trees. The varieties Arbequina, Frantoio and Cipressino were with greater richness of scale insects, the highest values of diversity occurred in Frantoio, Arbequina and Picual; in Alfafara, Arbosana and Coratina there was a high dominance of one species (S. oleae).
DOI: 10.7284/135031
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SKQ201905S using a Hawaii UHDAS instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7245005.v1
title: Survival of Escherichia coli O157:H7 and Staphylococcus aureus during the fermentation and storage of kefir

description: Abstract The survival of Escherichia coli O157: H7 and Staphylococcus aureus, which are foodborne pathogens was investigated during fermentation and storage of kefir. The kefir grains were inoculated with 5% of the whole fat UHT cow milk and the E. coli O157: H7 and S. aureus cultures were added separately to give 105 cfu mL-1 and left to incubate at 22 °C for 24 hours at first stage. During the incubation, the bacteria and yeast counts, pH and titratable acidity amounts were determined. In the second stage, E. coli O157: H7 and S. aureus cultures were separately added to produce 105 cfu mL -1 of kefir and was stocked at 5 °C for 3 days. Every day samples were taken and the same tests were done. During fermentation, in all samples the initial while TA was 0.14%, the fermentation was 1.0% and 1.01% at the end. The kefir samples were pH 4.5 at the end of the 3 day period of storage. S.aureus was significantly inhibited while E.coli was not inhibited during the fermentation process. During storage, E. coli O157: H7 and S. aureus were inhibited within 2 days. The kefir has the quality of being a healthy product during fermentation and storage.
DOI: 10.6084/m9.figshare.7245002
title: EFFECTS OF IRRIGATION, PLANTATION DENSITY AND clonal composition ON WOODY BIOMASS QUALITY FOR BIOENERGY IN A SHORT ROTATION CULTURE SYSTEM WITH WILLOWS (Salix spp.)

description: ABSTRACT A short rotation intensive system with willows was analyzed with the following aims: a - to determine the effects of irrigation, genotype and plantation density on wood anatomy, wood density, moisture content, lower heating value, total ash content and energy accumulated in the woody biomass; b - to explore the relationships between anatomical and physical wood properties and the parameters determining their quality as a biofuel. A complete factorial experiment was set up, with three factors and two levels for each factor. The factors were: irrigation, plantation density and clone (genotype). The clones were Salix matsudana Koidz. x Salix alba L. ‘Barrett 13-44 INTA´ (B) and Salix alba L. ‘Yaguareté INTA - CIEF´ (Y). 46 stools of 1 m long were sampled, on which the following determinations were carried out: vessel diameter and frequency, fiber wall thickness and area, wood density, moisture content, ash content and heating values. Clone B had higher wood density than clone Y (0.406 vs. 0.395 g/cm3) and lower moisture content (47.11 vs. 50.53 %). The plantation density did not affect any of the variables analyzed. Irrigation increased the energy yield to 393.2 Gj/ha, compared to 309.15 Gj/ha without irrigation. A system with clone B planted at a lower density (13,000 plants/ha) and under irrigation has the best advantage as an energetic crop over the other alternatives evaluated in this work.
DOI: 10.6084/m9.figshare.7245002.v1
title: EFFECTS OF IRRIGATION, PLANTATION DENSITY AND clonal composition ON WOODY BIOMASS QUALITY FOR BIOENERGY IN A SHORT ROTATION CULTURE SYSTEM WITH WILLOWS (Salix spp.)

description: ABSTRACT A short rotation intensive system with willows was analyzed with the following aims: a - to determine the effects of irrigation, genotype and plantation density on wood anatomy, wood density, moisture content, lower heating value, total ash content and energy accumulated in the woody biomass; b - to explore the relationships between anatomical and physical wood properties and the parameters determining their quality as a biofuel. A complete factorial experiment was set up, with three factors and two levels for each factor. The factors were: irrigation, plantation density and clone (genotype). The clones were Salix matsudana Koidz. x Salix alba L. ‘Barrett 13-44 INTA´ (B) and Salix alba L. ‘Yaguareté INTA - CIEF´ (Y). 46 stools of 1 m long were sampled, on which the following determinations were carried out: vessel diameter and frequency, fiber wall thickness and area, wood density, moisture content, ash content and heating values. Clone B had higher wood density than clone Y (0.406 vs. 0.395 g/cm3) and lower moisture content (47.11 vs. 50.53 %). The plantation density did not affect any of the variables analyzed. Irrigation increased the energy yield to 393.2 Gj/ha, compared to 309.15 Gj/ha without irrigation. A system with clone B planted at a lower density (13,000 plants/ha) and under irrigation has the best advantage as an energetic crop over the other alternatives evaluated in this work.
DOI: 10.6084/m9.figshare.7245008.v1
title: Diversity of scale insects (Hemiptera, Coccomorpha) in ten varieties of olive trees (Olea europaea L.) in Southern Brazil

description: Abstract Olive production (Olea europaea L.) is a recent activity in Brazil and studies on the adaptability of olive trees varieties in the States are required. One of the problems that can hamper the development of olive trees is the incidence of pests, such as scale insects (Hemiptera, Coccomorpha). In this study, the associated scale insect species were found in ten varieties in an olive grove located at the Research Center of the Serra do Sudeste Region (30º33’15”S, 52º23’45”W) in Brazil. The surveys were carried out twice in each season (2013-2014). Six species of armored scale insect (Diaspididae) and two soft scales (Coccidae) were determined. Saissetia oleae (Coccidae) with 88.15% and Aspidiotus nerii (Diaspididae) with 5.85% occurred in all varieties of olive trees. The varieties Arbequina, Frantoio and Cipressino were with greater richness of scale insects, the highest values of diversity occurred in Frantoio, Arbequina and Picual; in Alfafara, Arbosana and Coratina there was a high dominance of one species (S. oleae).
DOI: 10.7284/135028
title: Anemometer data collected during research cruise SKQ201905S using a Gill WindObserver 75 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7244993
title: Effect of laurel (Laurus nobilis) and curcuma (Curcuma longa ) on microbiological, chemical and sensory changes in vacuum packed sous-vide european sea bass (Dicentrarchus labrax) under chilled conditions

description: Abstract The study was conducted to evaluate the effect of ground laurel and curcuma on the quality changes (microbiological, chemical and sensory) of sous-vide processed gutted and vacuum packaged sea bass under refrigerated temperatures (+3°C). Sea bass samples were gutted and divided into 3 groups namely control (C), laurel added samples (LS) and curcuma added samples (CS) and 30 fish were used for each treatment group. Samples were stored under refrigerated (3 ± 1 °C) conditions for 60 days. Control group was vacuum packed and sous –vide processed and stored under chilled conditions while laurel and curcuma were added as a seasoning for the other groups. During the storage time the counts of total mesophilic aerobic bacteria (TMAB), total psychrophilic aerobic bacteria (TPAB) and Enterobacteriaceae have not reached the maximum allowable number of 7.00 log cfu/g. The highest TVB-N content (30.80 mg N/100g) was found for LS group at the end of the storage time. Regarding the changes in quality indicators the shelf life of the samples was found 45, 49 and 55 days for group C, LS and CS, respectively. The shelf life of the samples was extended 8.88 and 22.2% by addition of ground laurel and curcuma, respectively.
DOI: 10.6084/m9.figshare.7244993.v1
title: Effect of laurel (Laurus nobilis) and curcuma (Curcuma longa ) on microbiological, chemical and sensory changes in vacuum packed sous-vide european sea bass (Dicentrarchus labrax) under chilled conditions

description: Abstract The study was conducted to evaluate the effect of ground laurel and curcuma on the quality changes (microbiological, chemical and sensory) of sous-vide processed gutted and vacuum packaged sea bass under refrigerated temperatures (+3°C). Sea bass samples were gutted and divided into 3 groups namely control (C), laurel added samples (LS) and curcuma added samples (CS) and 30 fish were used for each treatment group. Samples were stored under refrigerated (3 ± 1 °C) conditions for 60 days. Control group was vacuum packed and sous –vide processed and stored under chilled conditions while laurel and curcuma were added as a seasoning for the other groups. During the storage time the counts of total mesophilic aerobic bacteria (TMAB), total psychrophilic aerobic bacteria (TPAB) and Enterobacteriaceae have not reached the maximum allowable number of 7.00 log cfu/g. The highest TVB-N content (30.80 mg N/100g) was found for LS group at the end of the storage time. Regarding the changes in quality indicators the shelf life of the samples was found 45, 49 and 55 days for group C, LS and CS, respectively. The shelf life of the samples was extended 8.88 and 22.2% by addition of ground laurel and curcuma, respectively.
DOI: 10.6084/m9.figshare.7244990
title: Use of molecular techniques for the analysis of the microbiological quality of fish marketed in the municipality of Cuiabá, Mato Grosso, Brazil

description: ABSTRACT The present study was stimulated by the growing demand for healthy food and the technology available for the detection and identification of microbial organisms in fishery products. Molecular tools were used to identify the bacterial community and detect the presence of pathogenic species in samples of farmed and wild-caught fish. Samples of muscle tissue were obtained from the local market in Cuiabá, Mato Grosso, Brazil. The 16S rDNA gene was used to detect 11 bacterial genera: Enterobacter (29.29%), Aeromonas (24.24%), Pseudomonnas (17.17%), Enterococcus (10.10%), Acinetobacter (6.06%), Citrobacter (4.04%), Bacillus (3.03%), Klebsiella and Lactococcus (2.02%), and Clostridium and Lysinibacillus (1.01%). High percentages of deleterious bacteria were recorded. Species-specific primers were used to detect the presence of Escherichia coli (35.71%), Staphylococcus aureus (12.5%), and Salmonella (7.14%), although Shigella was absent. These concentrations exceeded the limits established by the currently public health legislation. The molecular techniques used in the present study provide an alternative approach for the reliable diagnosis of contamination, which can be used on a large scale.
DOI: 10.6084/m9.figshare.7244990.v1
title: Use of molecular techniques for the analysis of the microbiological quality of fish marketed in the municipality of Cuiabá, Mato Grosso, Brazil

description: ABSTRACT The present study was stimulated by the growing demand for healthy food and the technology available for the detection and identification of microbial organisms in fishery products. Molecular tools were used to identify the bacterial community and detect the presence of pathogenic species in samples of farmed and wild-caught fish. Samples of muscle tissue were obtained from the local market in Cuiabá, Mato Grosso, Brazil. The 16S rDNA gene was used to detect 11 bacterial genera: Enterobacter (29.29%), Aeromonas (24.24%), Pseudomonnas (17.17%), Enterococcus (10.10%), Acinetobacter (6.06%), Citrobacter (4.04%), Bacillus (3.03%), Klebsiella and Lactococcus (2.02%), and Clostridium and Lysinibacillus (1.01%). High percentages of deleterious bacteria were recorded. Species-specific primers were used to detect the presence of Escherichia coli (35.71%), Staphylococcus aureus (12.5%), and Salmonella (7.14%), although Shigella was absent. These concentrations exceeded the limits established by the currently public health legislation. The molecular techniques used in the present study provide an alternative approach for the reliable diagnosis of contamination, which can be used on a large scale.
DOI: 10.7284/135029
title: Anemometer data collected during research cruise SKQ201905S using a Gill WindObserver 75 instrument system onboard the platform RV Sikuliaq

description: Processed data created by vessel technician during a Field_expedition
DOI: 10.6084/m9.figshare.7244984
title: Genetic parameters for type score traits and milk production in Brazilian Jersey herds

description: ABSTRACT This study aimed to estimate the heritability coefficients for ten functional type traits and milk production in the Jersey breed in Brazil, besides the genetic and phenotypic correlations between them. The present study utilised data from 1,567 records of linear type traits, including stature (ST), body depth (BD), loin strength (LS), rump width (RW), rump angle (RA), fore udder attachment (FUA), front teat placement (FTP), rear udder height (RUH), central ligament (CL), and final score (FS). Milk yield (MY) adjusted to 305 lactation days was also calculated. Covariance components were estimated by the restricted maximum likelihood approach using the PEST and VCE6 programs on the animal model. Heritability coefficients thus assessed were as follows: 0.22±0.01 (ST), 0.35±0.07 (BD), 0.17±0.01 (RW), 0.55±0.05 (RA), 0.09±0.01 (LS), 0.20±0.02 (FUA), 0.40±0.06 (FTP), 0.40±0.06 (RUH), 0.15±0.02 (CL), 0.21±0.02 (FS), and 0.16±0.02 (MY). Therefore, the higher genetic gain will be obtained for BD, RA, FTP, and RUH, while the other traits would need a medium or long-term period to show improvement. The genetic correlations fell in the range from 0.01 (FTP × FS) to 0.87 (RW × CL), and the only genetic correlation noted between FS and RA was negative (−0.10±0.06). Thus, in the Jersey breed in Brazil, the type traits are genetically associated, and the selection of any one of them may elicit an indirect response in another.
DOI: 10.6084/m9.figshare.7244987
title: Biofloc production in activated sludge system treating shrimp farming effluent

description: ABSTRACT The release of wastewater and the shrimp feed cost are the main challenges faced by the shrimp farming industry. An alternative solution to both problems is biofloc production in a unit external to the farm, in an activated sludge system for effluent treatment. The treatment system’s influent was composed of the shrimp farm wastewater supplemented with urea and sugarcane molasses. The results show that the average removal of chemical oxygen demand was 71% and the average biofloc production in the reactor was approximately 1.5g.L-1. Adding molasses to the influent contributed to the increase in the quantity and diversity of existing microorganisms that are beneficial to cultured shrimp. The mass balance of nitrogen compounds confirmed that nitrification occurred in the system. Therefore, the use of the activated sludge system is a viable and environmentally suitable alternative to produce bioflocs and shrimp farming effluent treatment.
DOI: 10.6084/m9.figshare.7244984.v1
title: Genetic parameters for type score traits and milk production in Brazilian Jersey herds

description: ABSTRACT This study aimed to estimate the heritability coefficients for ten functional type traits and milk production in the Jersey breed in Brazil, besides the genetic and phenotypic correlations between them. The present study utilised data from 1,567 records of linear type traits, including stature (ST), body depth (BD), loin strength (LS), rump width (RW), rump angle (RA), fore udder attachment (FUA), front teat placement (FTP), rear udder height (RUH), central ligament (CL), and final score (FS). Milk yield (MY) adjusted to 305 lactation days was also calculated. Covariance components were estimated by the restricted maximum likelihood approach using the PEST and VCE6 programs on the animal model. Heritability coefficients thus assessed were as follows: 0.22±0.01 (ST), 0.35±0.07 (BD), 0.17±0.01 (RW), 0.55±0.05 (RA), 0.09±0.01 (LS), 0.20±0.02 (FUA), 0.40±0.06 (FTP), 0.40±0.06 (RUH), 0.15±0.02 (CL), 0.21±0.02 (FS), and 0.16±0.02 (MY). Therefore, the higher genetic gain will be obtained for BD, RA, FTP, and RUH, while the other traits would need a medium or long-term period to show improvement. The genetic correlations fell in the range from 0.01 (FTP × FS) to 0.87 (RW × CL), and the only genetic correlation noted between FS and RA was negative (−0.10±0.06). Thus, in the Jersey breed in Brazil, the type traits are genetically associated, and the selection of any one of them may elicit an indirect response in another.
DOI: 10.6084/m9.figshare.7244987.v1
title: Biofloc production in activated sludge system treating shrimp farming effluent

description: ABSTRACT The release of wastewater and the shrimp feed cost are the main challenges faced by the shrimp farming industry. An alternative solution to both problems is biofloc production in a unit external to the farm, in an activated sludge system for effluent treatment. The treatment system’s influent was composed of the shrimp farm wastewater supplemented with urea and sugarcane molasses. The results show that the average removal of chemical oxygen demand was 71% and the average biofloc production in the reactor was approximately 1.5g.L-1. Adding molasses to the influent contributed to the increase in the quantity and diversity of existing microorganisms that are beneficial to cultured shrimp. The mass balance of nitrogen compounds confirmed that nitrification occurred in the system. Therefore, the use of the activated sludge system is a viable and environmentally suitable alternative to produce bioflocs and shrimp farming effluent treatment.
DOI: 10.7284/135019
title: Flowmeter data collected during research cruise SKQ201905S using a Krohne Optiflux 5000 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7244978
title: Genetic Testing and Pregnancy Outcome Analysis of 362 Fetuses with Congenital Heart Disease Identified by Prenatal Ultrasound

description: Abstract Background: Congenital heart defects (CHD), as the most common congenital anomaly, have been reported to be associated with chromosomal abnormalities. Currently, patients with CHD are routinely offered karyotyping and chromosomal microarray (CMA) testing, but the genotype-phenotype relationship has not yet been fully established. Objective: To determine the type and frequency of chromosomal abnormalities in fetuses with CHD and to analyze pregnancy outcomes of fetuses with heart abnormalities caused by different genetic factors. Methods: A total of 362 cases of CHD were enrolled from 2009 to 2016. Detailed ultrasound and laboratory examinations, including karyotyping and CMA, were performed. Outcome was obtained from discharge summaries. Results: Of the 362 fetuses, 220 were found with an isolated CHD, and 142 had CHD with extracardiac anomaly. Among these 362 fetuses, 140 were identified with a genetic cause, including 111 cases with aneuploidy, 10 cases with abnormality of chromosomal structure by karyotyping and 19 cases with pathogenic or likely pathogenic copy-number variations (CNVs) by CMA. The detection rate is close to 38.7%. Only one (identified as trisomy 18 syndrome) in 140 positive cases resulted in perinatal death, with the others being induced. The remaining 222 cases had negative results for both genetic testing and of these cases, 56 resulted in induced labor, and 77 had natural childbirth or caesarean births. The pregnancy outcome of the remaining 89 cases was uncertain. Conclusions: Karyotyping and CMA are effective and accurate prenatal genetic techniques for identifying fetal chromosomal abnormalities associated with cardiac defects, and this can assist clinical doctors to perform appropriate genetic counselling with regard to the etiology and outcome of CHD.