cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wxmvf7
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tanaecium caudiculatum (Standl.) L.G.Lohmann"
 ]
}

 The dataset includes 62 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005420-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111130652
title: Potsherds from Qumran, Schoyen MS 1655/3

description: [Text Description:] 4 potsherds ❧ [Text or Publication Number Note:] Schoyen MS 1655/3 ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] 4 potsherds, covered by "white wash" of varying color shades ❧ [Physical Object Note:] a. 11.2 x 9.4 cm; b. 6.6 x 5.3 cm, section of bowl with decorated circular lines; c. 10.3 x 5.8 cm, preserves base and lower part of body of a dish or wide bowl; d. 8.0 x 4.2 cm, part of rim of jar
DOI: 10.15468/dl.6tstsu
title: Occurrence Download

description: A dataset containing 336930 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year 2017-2018",
 "TaxonKey is Acridotheres tristis (Linnaeus, 1766)"
 ]
}

 The dataset includes 336930 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082937-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.actszh
title: Occurrence Download

description: A dataset containing 1369 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteropurpura festiva (Hinds, 1844)"
 ]
}

 The dataset includes 1369 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096502-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111130826
title: Potsherds from Qumran, Schoyen MS 1655/3

description: [Text Description:] 4 potsherds ❧ [Text or Publication Number Note:] Schoyen MS 1655/3 ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] 4 potsherds, covered by "white wash" of varying color shades ❧ [Physical Object Note:] a. 11.2 x 9.4 cm; b. 6.6 x 5.3 cm, section of bowl with decorated circular lines; c. 10.3 x 5.8 cm, preserves base and lower part of body of a dish or wide bowl; d. 8.0 x 4.2 cm, part of rim of jar
DOI: 10.15468/dl.wo5dcy
title: Occurrence Download

description: A dataset containing 248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Glaucomys volans (Linnaeus, 1758)"
 ]
}

 The dataset includes 248 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005437-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111130910
title: Potsherds from Qumran, Schoyen MS 1655/3

description: [Text Description:] 4 potsherds ❧ [Text or Publication Number Note:] Schoyen MS 1655/3 ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] 4 potsherds, covered by "white wash" of varying color shades ❧ [Physical Object Note:] a. 11.2 x 9.4 cm; b. 6.6 x 5.3 cm, section of bowl with decorated circular lines; c. 10.3 x 5.8 cm, preserves base and lower part of body of a dish or wide bowl; d. 8.0 x 4.2 cm, part of rim of jar
DOI: 10.15468/dl.ddjag2
title: Occurrence Download

description: A dataset containing 2479712 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "Geometry POLYGON((4.7603 51.89921,5.67601 51.89921,5.67601 52.50057,4.7603 52.50057,4.7603 51.89921))",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 2479712 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112569-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111303913
title: Papyrus fragment

description: [Text Description:] Fragment with Greek Text ❧ [Medium:] Papyrus ❧ [Script Note:] Greek ❧ [Physical Object Description:] Papyrus fragment ❧
DOI: 10.15468/dl.jgsyhz
title: Occurrence Download

description: A dataset containing 839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Paradisaea raggiana P.L.Sclater, 1873",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 839 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005434-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111130911
title: Potsherds from Qumran, Schoyen MS 1655/3

description: [Text Description:] 4 potsherds ❧ [Text or Publication Number Note:] Schoyen MS 1655/3 ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] 4 potsherds, covered by "white wash" of varying color shades ❧ [Physical Object Note:] a. 11.2 x 9.4 cm; b. 6.6 x 5.3 cm, section of bowl with decorated circular lines; c. 10.3 x 5.8 cm, preserves base and lower part of body of a dish or wide bowl; d. 8.0 x 4.2 cm, part of rim of jar
DOI: 10.15468/dl.ywahqh
title: Occurrence Download

description: A dataset containing 2159 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melica transsilvanica Schur"
 ]
}

 The dataset includes 2159 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082949-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m0ykqp
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((35.60791 5.32648,33.49854 4.23168,33.71826 -1.08178,39.34326 -4.89911,41.76025 -1.65291,41.97998 4.23168,35.60791 5.32648))",
 "TaxonKey is Chamaepentas hindsioides (K.Schum.) Kårehed & B.Bremer",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003431-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111304047
title: Psalm 22

description: [Text Description:] Fragment of Psalm 22:4-13 ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] Parchment fragment ❧
DOI: 10.15468/dl.59cfwk
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bartsia pauciflora Molau"
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005387-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111130745
title: Potsherds from Qumran, Schoyen MS 1655/3

description: [Text Description:] 4 potsherds ❧ [Text or Publication Number Note:] Schoyen MS 1655/3 ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] 4 potsherds, covered by "white wash" of varying color shades ❧ [Physical Object Note:] a. 11.2 x 9.4 cm; b. 6.6 x 5.3 cm, section of bowl with decorated circular lines; c. 10.3 x 5.8 cm, preserves base and lower part of body of a dish or wide bowl; d. 8.0 x 4.2 cm, part of rim of jar
DOI: 10.15468/dl.egr9sb
title: Occurrence Download

description: A dataset containing 3225818 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-81.40869 -5.09094,-74.94873 -5.09094,-74.94873 1.40611,-81.40869 1.40611,-81.40869 -5.09094))",
 "HasCoordinate is true",
 "TaxonKey is Animalia",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3225818 records from 589 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082946-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7274/28571045
title: Improving Scientific Information Extraction with Text Generation

description: As research communities expand, the number of scientific articles continues to grow rapidly, with no signs of slowing. This information overload drives the need for automated tools to identify relevant materials and extract key ideas. Information extraction (IE) focuses on converting unstructured scientific text into structured knowledge (e.g., ontologies, taxonomies, and knowledge graphs), enabling intelligent systems to excel in tasks like document organization, scientific literature retrieval and recommendation, claim verification even novel idea or hypothesis generation. To pinpoint the scope of this thesis, I focus on the taxonomic structure in this thesis to represent the knowledge in the scientific domain.

To construct a taxonomy from scientific corpora, traditional methods often rely on pipeline frameworks. These frameworks typically follow a sequence: first, extracting scientific concepts or entities from the corpus; second, identifying hierarchical relationships between the concepts; and finally, organizing these relationships into a cohesive taxonomy. However, such methods encounter several challenges: (1) the quality of the corpus or annotation data, (2) error propagation within the pipeline framework, and (3) limited generalization and transferability to other specific domains. The development of large language models (LLMs) offers promising advancements, as these models have demonstrated remarkable abilities to internalize knowledge and respond effectively to a wide range of inquiries. Unlike traditional pipeline-based approaches, generative methods harness LLMs to achieve (1) better utilization of their internalized knowledge, (2) direct text-to-knowledge conversion, and (3) flexible, schema-free adaptability.

This thesis explores innovative methods for integrating text generation technologies to improve IE in the scientific domain, with a focus on taxonomy construction. The approach begins with generating entity names and evolves to create or enrich taxonomies directly via text generation. I will explore combining neighborhood structural context, descriptive textual information, and LLMs' internal knowledge to improve output quality. Finally, this thesis will outline future research directions.
DOI: 10.7274/28571045.v1
title: Improving Scientific Information Extraction with Text Generation

description: As research communities expand, the number of scientific articles continues to grow rapidly, with no signs of slowing. This information overload drives the need for automated tools to identify relevant materials and extract key ideas. Information extraction (IE) focuses on converting unstructured scientific text into structured knowledge (e.g., ontologies, taxonomies, and knowledge graphs), enabling intelligent systems to excel in tasks like document organization, scientific literature retrieval and recommendation, claim verification even novel idea or hypothesis generation. To pinpoint the scope of this thesis, I focus on the taxonomic structure in this thesis to represent the knowledge in the scientific domain.

To construct a taxonomy from scientific corpora, traditional methods often rely on pipeline frameworks. These frameworks typically follow a sequence: first, extracting scientific concepts or entities from the corpus; second, identifying hierarchical relationships between the concepts; and finally, organizing these relationships into a cohesive taxonomy. However, such methods encounter several challenges: (1) the quality of the corpus or annotation data, (2) error propagation within the pipeline framework, and (3) limited generalization and transferability to other specific domains. The development of large language models (LLMs) offers promising advancements, as these models have demonstrated remarkable abilities to internalize knowledge and respond effectively to a wide range of inquiries. Unlike traditional pipeline-based approaches, generative methods harness LLMs to achieve (1) better utilization of their internalized knowledge, (2) direct text-to-knowledge conversion, and (3) flexible, schema-free adaptability.

This thesis explores innovative methods for integrating text generation technologies to improve IE in the scientific domain, with a focus on taxonomy construction. The approach begins with generating entity names and evolves to create or enrich taxonomies directly via text generation. I will explore combining neighborhood structural context, descriptive textual information, and LLMs' internal knowledge to improve output quality. Finally, this thesis will outline future research directions.
DOI: 10.5281/zenodo.17459925
title: IODP Expedition 317 P-wave velocity caliper (section)

description: P-wave velocity data were measured on undisturbed section halves (JRSO-defined x-axis) and/or discrete cube and cylinder samples (x, y, or z-axis) using pairs of piezoelectric transducers mounted on a caliper system. Report includes P-wave velocity in x, y, and/or z-direction, caliper separation, traveltime between transucers, and first arrival picks.
DOI: 10.5281/zenodo.17459926
title: IODP Expedition 317 P-wave velocity caliper (section)

description: P-wave velocity data were measured on undisturbed section halves (JRSO-defined x-axis) and/or discrete cube and cylinder samples (x, y, or z-axis) using pairs of piezoelectric transducers mounted on a caliper system. Report includes P-wave velocity in x, y, and/or z-direction, caliper separation, traveltime between transucers, and first arrival picks.
DOI: 10.15468/dl.rjuesw
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anthophora sichelii",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004772-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.adrhzu
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Egeria densa",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 157 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005236-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/4mcws9
title: Jurica-Suchy Nature Museum at Benedictine University Herbarium Specimens (Arctos)

description: The Jurica-Suchy Nature Museum is a small natural history museum located on the second floor of the Michael and Kay Birck Hall of Science at Benedictine University. The museum represents the work of Fr. Hilary Jurica, O.S.B. and his brother, Fr. Edmund Jurica, O.S.B. who collected specimens for their students to use during their almost 100 combined years of teaching at Benedictine University. In the early 1970's, the Museum was placed in the hands of Fr. Theodore Suchy, O.S.B. who turned their collection of specimens into a thriving nature museum. Fr. Ted continued collecting and the collection grew to over 10,000 specimens, ranging from a tiny aphid to a whale skeleton. The Herbarium collection was started by Fathers Hilary and Edmund Jurica, O.S.B. The purpose of the collection is to help visualize and identify plants over time.
DOI: 10.15468/dl.vuuvsm
title: Occurrence Download

description: A dataset containing 9745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cabomba caroliniana, Dikerogammarus villosus)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Unknown evidence, Machine Observation, Occurrence evidence)",
 "Year is greater than or equal to 1971",
 "Year is less than or equal to 2024",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9745 records from 271 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061177-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y0goyn
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Borkhart"
 ]
}

 The dataset includes 34 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017922-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brm9d8
title: Occurrence Download

description: A dataset containing 31936 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Records of Avifauna of Wetlands around Keoladeo National Park, Bharatpur, India"
 ]
}

 The dataset includes 31936 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188207-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hicsp1
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nesoryzomys fernandinae Hutterer & Hirsch, 1979"
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017929-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zt64mn
title: Occurrence Download

description: A dataset containing 1024 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chrosomus oreas Cope, 1868)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1024 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049043-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4pq4k
title: Occurrence Download

description: A dataset containing 86375 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dinophysis Ehrenberg, 1839"
 ]
}

 The dataset includes 86375 records from 370 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179308-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p1hgtr
title: Occurrence Download

description: A dataset containing 171366 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picoides scalaris (Wagler, 1829)"
 ]
}

 The dataset includes 171366 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017926-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.49uj4h
title: Occurrence Download

description: A dataset containing 67498 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cassia L."
 ]
}

 The dataset includes 67498 records from 597 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184252-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ovltks
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is Actualización de la Colección Nacional de Peces dulceacuícolas mexicanos, ENCB"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017929-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fpfa9w
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miconia amblyandra Naudin"
 ]
}

 The dataset includes 60 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003521-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6nr74c
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is MPM Herpetology"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017930-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpqd43
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Panopeus meridionalis Williams, 1983)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049044-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6pjn85
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-59.87768 -64.02502,-62.3562 -62.21448,-63.21753 -62.57483,-66.17065 -63.7262,-64.90811 -66.62714,-59.87768 -64.02502))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lagenorhynchus cruciger (Quoy & Gaimard, 1824)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0210111-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fpxsn6
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Crustomyces expallens (Bres.) Hjortstam"
 ]
}

 The dataset includes 33 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017930-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.