cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3622376_d3
title: Additional file 15: of Comparative transcript profiling of resistant and susceptible peanut post-harvest seeds in response to aflatoxin production by Aspergillus flavus

description: GO functional enrichment analysis of differentially expressed genes when peanut seeds respond to aflatoxin production by A. flavus. (XLSX 78 kb)
DOI: 10.6084/m9.figshare.c.3621941_d7
title: Additional file 6: of Transcriptome sequencing and analysis of major genes involved in calcium signaling pathways in pear plants (Pyrus calleryana Decne.)

description: Candidate genes involved in calcium signaling pathways in pear plants. (XLS 98Â kb)
DOI: 10.6084/m9.figshare.c.3621941_d6
title: Additional file 2: of Transcriptome sequencing and analysis of major genes involved in calcium signaling pathways in pear plants (Pyrus calleryana Decne.)

description: KEGG pathways of the unique sequences. (XLS 712Â kb)
DOI: 10.6084/m9.figshare.c.3621941_d2
title: Additional file 5: of Transcriptome sequencing and analysis of major genes involved in calcium signaling pathways in pear plants (Pyrus calleryana Decne.)

description: Candidate genes involved in MYB transcript factors. (XLS 286Â kb)
DOI: 10.6084/m9.figshare.c.3621701_d7
title: Additional file 1: Table S1. of Single-stranded DNA binding protein Ssbp3 induces differentiation of mouse embryonic stem cells into trophoblast-like cells

description: Primers used in this study for gene cloning, qRT-PCR, and shRNA targeting sequences. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3621731_d3
title: Additional file 3: Table S10. of Argonaute 2 and nasopharyngeal carcinoma: a genetic association study and functional analysis

description: Biological network analysis of genes with significantly altered expression following AGO2 knockdown in CNE2Z cells. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.c.3621701_d6
title: Additional file 3: Table S2. of Single-stranded DNA binding protein Ssbp3 induces differentiation of mouse embryonic stem cells into trophoblast-like cells

description: Differentially expressed genes induced by Ssbp3. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3621533_d10
title: Additional file 16: Table S6. of Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of Xanthomonas translucens

description: Microarray analysis of gene expression from inoculated wheat leaves by XT4699, XT-Rocky and XT4699hrcC â  . (XLSX 153 kb)
DOI: 10.6084/m9.figshare.c.3621533_d9
title: Additional file 3: Table S3. of Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of Xanthomonas translucens

description: Genes with plant inducible promoter (PIP) box in XT4699. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3621569_d1
title: Additional file 5: Figure S5. of Exogenous auxin regulates multi-metabolic network and embryo development, controlling seed secondary dormancy and germination in Nicotiana tabacum L.

description: Volcano plots of significant genes in dormancy and germination of Nicotiana tabacum L. plants after RNA-seq analysis. The x-axis represents the average value and the y-axis represents log 2 fold change. Several breakpoints of the Fc values are indicated on the Y-axis, where 0 indicates â  no changeâ  . Up-regulated and down-regulated genes are shown in red (p &lt;0.05) and genes with a slight change in expression are shown in black (Additional file 5: Figure S5A, Untreated-0 vs H2O-0; Additional file 5: Figure S5B, IAA-0 vs H2O-0; Additional file 5: Figure S5C, H2O-72vs IAA-72; Additional file 5: Figure S5D, IAA-156 vs IAA-72.). (ZIP 1914Â kb)
DOI: 10.6084/m9.figshare.c.3621533_d6
title: Additional file 20: Table S7. of Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of Xanthomonas translucens

description: Primers used in this study. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3621533_d2
title: Additional file 2: Table S2. of Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of Xanthomonas translucens

description: Summary of alignments of Sanger reads from TAL effector genes to the assembly genome of XT4699. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3621032_d2
title: Additional file 1: of Integrated analysis of miRNA, gene, and pathway regulatory networks in hepatic cancer stem cells

description: Table S1. Consistently differentially expressed miRNAs.
DOI: 10.6084/m9.figshare.c.3621032_d1
title: Additional file 2: of Integrated analysis of miRNA, gene, and pathway regulatory networks in hepatic cancer stem cells

description: Table S2. Consistently differentially expressed mRNAs.
DOI: 10.6084/m9.figshare.c.3620939_d1
title: Additional file 2: of Evolutionary context for the association of Îł-globin, serum uric acid, and hypertension in African Americans

description: Annotation of SNPs associated with serum uric acid levels. (XLSX 14 kb)
DOI: 10.15468/dl.sqmf6h
title: Occurrence Download

description: A dataset containing 3998 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stenocereus thurberi (Engelm.) Buxb."
 ]
}

 The dataset includes 3998 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032625-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3620222_d6
title: Additional file 4: of A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

description: Excel workbook. Lists of genes meeting the criteria used in Rosli et al. 2013 in Fig.Â 2, including the criterion data. (XLSX 71Â kb)
DOI: 10.6084/m9.figshare.c.3620222_d7
title: Additional file 3: of A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

description: Excel workbook. Lists of genes showing significant regulation in Figs.Â 2 and 3, including the criterion data. (XLS 1602Â kb)
DOI: 10.6084/m9.figshare.c.3620222_d5
title: Additional file 2: Table S1. of A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

description: Read quality of the RNA-Seq reactions used in this study. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3620222_d3
title: Additional file 9: Figure S4. of A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

description: No group of genes in this transcriptome are seemingly regulated independently of PTI. A scatterplot where the X coordinate equals induction by D29E pCPP45::avrPto(I96A,2xA) relative to a mock inoculation without bacteria, representing the PTI-induced transcriptome. Only RPKM values were used to select this data set, and there is not a set of genes strongly up- or down-regulated by the CD or CTD combined independently of PTI. (XLS 2504Â kb)
DOI: 10.6084/m9.figshare.c.3619709_d2
title: Additional file 3: of Transcriptome and comparative gene expression analysis of Phyllostachys edulis in response to high light

description: The list of expressed genes with FPKM â Ľ1 in Venn diagram. (XLSX 289Â kb)
DOI: 10.6084/m9.figshare.c.3619709_d1
title: Additional file 5: of Transcriptome and comparative gene expression analysis of Phyllostachys edulis in response to high light

description: The significant GO terms in within-sample. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3619517_d4
title: Additional file 3: Table S3. of Preoperative platelet-lymphocyte ratio is superior to neutrophil-lymphocyte ratio as a prognostic factor for soft-tissue sarcoma

description: Multivariate analysis model predicting overall survival using platelet-lymphocyte- ratio (PLR). (XLSX 11 kb)
DOI: 10.15468/dl.mj9gp7
title: Occurrence Download

description: A dataset containing 203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "OccurrenceStatus is Present",
 "TaxonKey is Musculium partumeium (Say, 1822)"
 ]
}

 The dataset includes 203 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032626-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3619064_d3
title: Additional file 3: of Eye exercises of acupoints: their impact on myopia and visual symptoms in Chinese rural children

description: Dataset. (SAV 53 kb)
DOI: 10.6084/m9.figshare.c.3619055_d3
title: Additional file 2: Figure S2. of Bacurd1/Kctd13 and Bacurd2/Tnfaip1 are interacting partners to Rnd proteins which influence the long-term positioning and dendritic maturation of cerebral cortical neurons

description: The effects of Bacurd1/Kctd13 and Bacurd2/Tnfaip1 on cell positioning and cortical identity. (ZIP 2329Â kb)
DOI: 10.6084/m9.figshare.c.3619055_d2
title: Additional file 3: Figure S3. of Bacurd1/Kctd13 and Bacurd2/Tnfaip1 are interacting partners to Rnd proteins which influence the long-term positioning and dendritic maturation of cerebral cortical neurons

description: Analysis of dendritic branching in layer II/III projection neurons of the postnatal P17 cortex. (PDF 650Â kb)
DOI: 10.6084/m9.figshare.c.3619055_d1
title: Additional file 1: Figure S1. of Bacurd1/Kctd13 and Bacurd2/Tnfaip1 are interacting partners to Rnd proteins which influence the long-term positioning and dendritic maturation of cerebral cortical neurons

description: Kctd13 and Tnfaip1 are putative interacting partners to Rnd2 and Rnd3 which are expressed in mouse and human tissues. (ZIP 322Â kb)
DOI: 10.6084/m9.figshare.c.3619028_d2
title: Additional file 2: Table S1A. of Proteome profiling reveals insights into cold-tolerant growth in sea buckthorn

description: The identified protein summary of H. rhamnoides cv. ‘Chuisk’ responding to low-temperature stress using MALDI-TOF-TOF. Table S1B. The identified protein detail of H. rhamnoides cv. ‘Chuisk’ responding to low-temperature stress using MALDI-TOF-TOF. Table S2. GO enrichment terms under low-temperature stress with Arabidopsis thaliana homologues using GOEAST. Table S3. KEGG pathways of protein spots under low-temperature stress. Table S4. Primers used for detecting the gene expression by reverse real-time PCR. (XLS 171 kb)
DOI: 10.6084/m9.figshare.c.3619004_d11
title: Additional file 9: Table S21. of Transcriptional maturation of the mouse auditory forebrain

description: Read counts for genes in all HUGO gene families. Normalized read counts for 19,826 genes in all HUGO gene families currently listed in that resource, listed alphabetically by gene family. Source: HUGO Gene Families database, HUGO Gene Nomenclature Committee at the European Bioinformatics Institute ( http://www.genenames.org ). Table S22. Gene set enrichment analysis of 111 HUGO gene families. Genesets are listed by functional group and family (from Table S21). For each geneset, the number of genes (Size), false discovery rate (FDR q-value), and direction of expression (up, down) are listed. Shading denotes gene families enriched above the 25Â % FDR cutoff. Table S23. Normalized read counts for genes in selected gene ontology (GO) categories from the MGI database. Genes are arranged alphabetically by GO category, along with gene symbols, names, and annotations. Source: Mouse Genome Informatics (MGI) Gene Ontology Browser, Jackson Laboratories ( www.informatics.jax.org ). Table S24. Gene set enrichment analysis of the 51 gene ontology categories. Genesets are listed by functional group and GO designation (from Table S23). For each geneset, the number of genes (Size), false discovery rate (FDR q-value), and direction of expression (up, down) are listed. Shading denotes categories enriched above 25Â % FDR cutoff.
DOI: 10.34740/kaggle/dsv/10185135
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.6084/m9.figshare.c.3619004_d10
title: Additional file 10: Table S25. of Transcriptional maturation of the mouse auditory forebrain

description: Gene families database. Normalized read counts and plots of ~4700 genes in 237 gene families from the HUGO database. Gene families are grouped by 20 functional categories arranged in tabs. For each family, normalized read counts (mean and % of maximum) are provided for A1 and MG as a function of postnatal age to permit rapid screening of the relationships between genes by brain region and age.
DOI: 10.6084/m9.figshare.c.3619004_d9
title: Additional file 5: of Transcriptional maturation of the mouse auditory forebrain

description: Differential expression in the MG for age group comparisons between P14, P21 and Adult (P14-P21, P14-Adult, P21-Adult). Table S12. Differential expression analyses in the MG comparing P14 with P21 using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S13. Differential expression analyses in the MG comparing P14 with Adult using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S14. Differential expression analyses in the MG comparing P21 with Adult using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank.
DOI: 10.6084/m9.figshare.c.3619004_d6
title: Additional file 7: of Transcriptional maturation of the mouse auditory forebrain

description: Differential expression in A1 for age group comparisons between P14, P21 and Adult (P14-P21, P14-Adult, P21-Adult). Table S18. Differential expression analyses in A1 comparing P14 with P21 using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S19. Differential expression analyses in A1 comparing P14 with Adult using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S20. Differential expression analyses in A1 comparing P21 with Adult using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank.
DOI: 10.6084/m9.figshare.c.3618986_d6
title: Additional file 3: of Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication

description: This file reports mapping the 1568 deletions to QTLs. This file is in the tab delimited format and can be opened using the software Excel. (TXT 1015Â kb)
DOI: 10.6084/m9.figshare.c.3619004_d4
title: Additional file 3: of Transcriptional maturation of the mouse auditory forebrain

description: Differential expression comparing A1 and MG at at P7, P14, P21, and Adult. Table S5. Differential expression analyses comparing MG with A1 at P7 for all genes using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods. Gene listing is given in. Table S6. Differential expression analyses comparing MG with A1 at P14 for all genes using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S7. Differential expression analyses comparing MG with A1 at P21 for all genes using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S8. Differential expression analyses comparing MG with A1 in adult animals for all genes using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank.
DOI: 10.6084/m9.figshare.c.3619004_d5
title: Additional file 11: of Transcriptional maturation of the mouse auditory forebrain

description: Look-up and plotting tool. This tool supports automated extraction of normalized counts for A1 and MG, and generates a plot of the counts and correlation matrix comparing maturational trajectories between each age group. A list of up to 25 genes can be entered into Column A. Use standard gene names only. Not case sensitive, but omit empty spaces. The normalized counts will populate in columns B â   AU, and the data plotted below (profile plots, correlation matrices). Erase or overwrite gene names to generate a new listing. Counts are extracted from the Normalized Reads tab. This tab is locked and should not be edited.
DOI: 10.6084/m9.figshare.c.3618986_d5
title: Additional file 4: of Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication

description: This file records the relationship between QTLs and rice genes in the same region on the reference chromosome. This file is in the tab delimited format and can be opened using the software Excel. (TXT 2342Â kb)
DOI: 10.6084/m9.figshare.c.3619004_d3
title: Additional file 6: of Transcriptional maturation of the mouse auditory forebrain

description: Differential expression in A1 for age group comparisons with P7 (P7-Adult, P7-P14, P7-P21). Table S15. Differential expression analyses in A1 comparing P7 with Adult using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S16. Differential expression analyses in A1 comparing P7 with P14 using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S17. Differential expression analyses in A1 comparing P7 with P21 using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank.
DOI: 10.6084/m9.figshare.c.3618983_d7
title: Additional file 5: Table S4. of Identification, characterization and expression analysis of lineage-specific genes within sweet orange (Citrus sinensis)

description: RNA-Seq data of citrus-specific genes (CSGs) in four sweet orange tissues. (XLS 118 kb)
DOI: 10.6084/m9.figshare.c.3618998_d4
title: Additional file 4: Table S4. of Systematic analysis of the molecular mechanism underlying atherosclerosis using a text mining approach

description: Potential susceptibility genes for atherosclerosis. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3618998_d3
title: Additional file 2: Table S2. of Systematic analysis of the molecular mechanism underlying atherosclerosis using a text mining approach

description: Gene ontology analysis. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3618740_d18
title: Additional file 4: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: Statistics of hits of A. baeriâ  s sequences to species in the Uniprot database. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3618776_d2
title: Additional file 2: of The combined effect of PDX1, epidermal growth factor and poly-L-ornithine on human amnion epithelial cellsâ   differentiation

description: Effect of mPdx1 transduction on p2 hAECs. The qPCR data obtained upon transducing p2 hAECs with 50MOI of the mPdx1 adenovirus is given. The statistical calculations are also included. (XLSX 67Â kb)
DOI: 10.6084/m9.figshare.c.3618740_d15
title: Additional file 11: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: List of significant differentially expressed unigenes for each pair of EdgeR comparison of each pair of samples. (XLSX 2223 kb)
DOI: 10.6084/m9.figshare.c.3618740_d14
title: Additional file 10: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: EdgeR output files for pairwise comparison of samples for identification of DEGs. (XLSX 684 kb)
DOI: 10.6084/m9.figshare.c.3618776_d1
title: Additional file 6: of The combined effect of PDX1, epidermal growth factor and poly-L-ornithine on human amnion epithelial cells’ differentiation

description: Combined effect of EGF and PLO on mPdx1 transduced hAECs. The qPCR data obtained upon transducing p2 hAECs with 50MOI of the mPdx1 adenovirus is given. One set of cells were grown in the presence of 0.01 % PLO while another was grown in the presence of 0.001 % PLO. All cells were grown in the presence of 10 ng/mL EGF. The statistical calculations are also included. (XLSX 108 kb)
DOI: 10.6084/m9.figshare.c.3618740_d12
title: Additional file 13: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: Significantly enriched GO-terms obtained from the GO enrichment analysis of DEGs between T1-T2. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3618740_d13
title: Additional file 3: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: Results file of the best matches of unigenes obtained from the alignment against Uniprot database. (XLS 9825 kb)
DOI: 10.6084/m9.figshare.c.3618740_d11
title: Additional file 14: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: Significantly enriched pathways obtained from the KEGG pathway enrichment analysis of DEGs between T1 and T2. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3618740_d10
title: Additional file 9: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: Expression level of unigenes estimated by RSEM in FPKM units. (XLSX 1107 kb)