cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7433123
title: Ancient DNA glossary

description: The ancient DNA field uses a collection of specialized terms, as well as a specific vocabulary to describe its purposes, methodologies, results, and interpretations, which may be unfamiliar and unclear/obscure to scientists of other disciplines, such as archaeologists, anthropologists, historians, etc. To this end, in order to fill the comprehension gap and enable easier multidisciplinary communication, the Ancient DNA Lab of IMBB-FORTH compiled a list of terms, frequently used in the ancient DNA field that can serve as a thesaurus for everybody.
DOI: 10.5281/zenodo.7433124
title: Ancient DNA glossary

description: The ancient DNA field uses a collection of specialized terms, as well as a specific vocabulary to describe its purposes, methodologies, results, and interpretations, which may be unfamiliar and unclear/obscure to scientists of other disciplines, such as archaeologists, anthropologists, historians, etc. To this end, in order to fill the comprehension gap and enable easier multidisciplinary communication, the Ancient DNA Lab of IMBB-FORTH compiled a list of terms, frequently used in the ancient DNA field that can serve as a thesaurus for everybody.
DOI: 10.6084/m9.figshare.21717707
title: C-iTRACE IAGE Ocean

description: Ideal age as an ocean tracer from an isotope enabled coarse resolution (3˚), ocean-only simulation run from the LGM (22ka) to present day using iPOP2. Reprocessed original netcdf3 file to netcdf4 using Xarray
DOI: 10.6084/m9.figshare.21717707.v1
title: C-iTRACE IAGE Ocean

description: Ideal age as an ocean tracer from an isotope enabled coarse resolution (3˚), ocean-only simulation run from the LGM (22ka) to present day using iPOP2. Reprocessed original netcdf3 file to netcdf4 using Xarray
DOI: 10.6084/m9.figshare.21717824.v2
title: Self-supervised learning of materials concepts from crystal structures via deep neural networks

description: Supplementary materials for "Self-supervised learning of materials concepts from crystal structures via deep neural networks Paper GitHub <br> This repository contains the following: pretrained model: model.ckpt embeddings of Materials Project data using our model: embedding_crystal_cgcnn_trainall_v0.pt, embedding_xrd_cgnnn_trainall_v0.pt We will add dataset to reproduce our results.
DOI: 10.5281/zenodo.7434183
title: Extracted SoS heuristics

description: Extracted SoS Heuristics
DOI: 10.5281/zenodo.7434182
title: Extracted SoS heuristics

description: Extracted SoS Heuristics
DOI: 10.6084/m9.figshare.21554661
title: Algorithms for Sparse Support Vector Machines

description: Many problems in classification involve huge numbers of irrelevant features. Variable selection reveals the crucial features, reduces the dimensionality of feature space, and improves model interpretation. In the support vector machine literature, variable selection is achieved by l1 penalties. These convex relaxations seriously bias parameter estimates toward 0 and tend to admit too many irrelevant features. The current article presents an alternative that replaces penalties by sparse-set constraints. Penalties still appear, but serve a different purpose. The proximal distance principle takes a loss function L(β) and adds the penalty ρ2dist(β,Sk)2 capturing the squared Euclidean distance of the parameter vector β to the sparsity set <i>S<sub>k</sub></i> where at most <i>k</i> components of β are nonzero. If βρ represents the minimum of the objective fρ(β)=L(β)+ρ2dist(β,Sk)2, then βρ tends to the constrained minimum of L(β) over <i>S<sub>k</sub></i> as <i>ρ</i> tends to ∞. We derive two closely related algorithms to carry out this strategy. Our simulated and real examples vividly demonstrate how the algorithms achieve better sparsity without loss of classification power. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.21554661.v1
title: Algorithms for Sparse Support Vector Machines

description: Many problems in classification involve huge numbers of irrelevant features. Variable selection reveals the crucial features, reduces the dimensionality of feature space, and improves model interpretation. In the support vector machine literature, variable selection is achieved by l1 penalties. These convex relaxations seriously bias parameter estimates toward 0 and tend to admit too many irrelevant features. The current article presents an alternative that replaces penalties by sparse-set constraints. Penalties still appear, but serve a different purpose. The proximal distance principle takes a loss function L(β) and adds the penalty ρ2dist(β,Sk)2 capturing the squared Euclidean distance of the parameter vector β to the sparsity set <i>S<sub>k</sub></i> where at most <i>k</i> components of β are nonzero. If βρ represents the minimum of the objective fρ(β)=L(β)+ρ2dist(β,Sk)2, then βρ tends to the constrained minimum of L(β) over <i>S<sub>k</sub></i> as <i>ρ</i> tends to ∞. We derive two closely related algorithms to carry out this strategy. Our simulated and real examples vividly demonstrate how the algorithms achieve better sparsity without loss of classification power. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.21718013
title: A novel interleukin-2-based fusion molecule, HCW9302, differentially promotes regulatory T cell expansion to treat atherosclerosis in mice

description: Atherosclerosis is a chronic inflammatory disease caused by deposition of oxidative low-density lipoprotein (LDL) in the arterial intima which triggers the innate immune response through myeloid cells such as macrophages. Regulatory T cells (Tregs) play an important role to control the progression or regression of atherosclerosis by resolving macrophage-mediated inflammatory functions. Interleukin-2 (IL-2) signaling is essential for homeostasis of Tregs. Since recombinant IL-2 has an unfavorable pharmacokinetic profile limiting its therapeutic use, we constructed a fusion protein, designated HCW9302, containing two IL-2 domains linked by an extracellular tissue factor domain. We found that HCW9302 exhibited a longer serum half-life with an approximately 1000-fold higher affinity for IL-2Rα than IL-2. HCW9302 could be administered to mice at a dosing range that expanded and activated Tregs but not CD4 effector T cells. In <em>ApoE-/-</em> mouse model, HCW9302 treatment curtailed the progression of atherosclerosis through Treg activation and expansion, M2 macrophage polarization and myeloid-derived suppressor cell induction. HCW9302 treatment also lessened the proinflammation in aorta. Thus, HCW9302 is a potential therapeutic agent to expand and activate Tregs for treatment of inflammatory and autoimmune diseases.
DOI: 10.6084/m9.figshare.21718013.v1
title: A novel interleukin-2-based fusion molecule, HCW9302, differentially promotes regulatory T cell expansion to treat atherosclerosis in mice

description: Atherosclerosis is a chronic inflammatory disease caused by deposition of oxidative low-density lipoprotein (LDL) in the arterial intima which triggers the innate immune response through myeloid cells such as macrophages. Regulatory T cells (Tregs) play an important role to control the progression or regression of atherosclerosis by resolving macrophage-mediated inflammatory functions. Interleukin-2 (IL-2) signaling is essential for homeostasis of Tregs. Since recombinant IL-2 has an unfavorable pharmacokinetic profile limiting its therapeutic use, we constructed a fusion protein, designated HCW9302, containing two IL-2 domains linked by an extracellular tissue factor domain. We found that HCW9302 exhibited a longer serum half-life with an approximately 1000-fold higher affinity for IL-2Rα than IL-2. HCW9302 could be administered to mice at a dosing range that expanded and activated Tregs but not CD4 effector T cells. In <em>ApoE-/-</em> mouse model, HCW9302 treatment curtailed the progression of atherosclerosis through Treg activation and expansion, M2 macrophage polarization and myeloid-derived suppressor cell induction. HCW9302 treatment also lessened the proinflammation in aorta. Thus, HCW9302 is a potential therapeutic agent to expand and activate Tregs for treatment of inflammatory and autoimmune diseases.
DOI: 10.5441/001/1.8vt33535/1
title: Navigation with unilateral hippocampal lesion in homing pigeons (data from Gagliardo et al. 2022).csv

description: Gagliardo A, Pollonara E, Casini G, Bingman VP. 2022. Unilateral hippocampal lesions and the navigational performance of homing pigeons as revealed by GPS-tracking. Ethol Ecol Evol. doi:10.1080/03949370.2022.2152105
description: The left and right hippocampal formation (HF) of the avian brain have been reported to control some different aspects of homing in pigeons. In the current study, we employed GPS-tracking technology and unilateral HF lesions to further explore what if any aspects of a pigeon’s homing flight might be under dominant control by either the left or right HF. Pigeons were released from three locations prior to any experimental manipulation and released repeatedly from the same three sites as sham-lesioned control, right HF-lesioned and left HF-lesioned treatment groups. Analyses of homing performance and virtual vanishing bearings revealed no effect of either lesion treatment. A more in-depth analysis of path efficiency during the initial decision-making, en route and near home phases of a homing flight also revealed no effect of either lesion treatment. A last analysis on the learning and memory for positions along a previously flown route, a proxy for investigating the development of route fidelity, also revealed no effect of either unilateral lesion. However, independent of treatment group, some statistically significant effects were observed with respect to changes in performance across training and the different release sites. The current study revealed no detectable difference between the left and right HF-lesioned pigeons with respect to several navigational parameters of a homing flight. Although in need of supporting experimentation, the results are consistent with the hypothesis that both the left and right HF are similarly able to support several aspects of homing pigeon navigation.
DOI: 10.5441/001/1.8vt33535/2
title: Navigation with unilateral hippocampal lesion in homing pigeons (data from Gagliardo et al. 2022)-reference-data

description: Gagliardo A, Pollonara E, Casini G, Bingman VP. 2022. Unilateral hippocampal lesions and the navigational performance of homing pigeons as revealed by GPS-tracking. Ethol Ecol Evol. doi:10.1080/03949370.2022.2152105
description: The left and right hippocampal formation (HF) of the avian brain have been reported to control some different aspects of homing in pigeons. In the current study, we employed GPS-tracking technology and unilateral HF lesions to further explore what if any aspects of a pigeon’s homing flight might be under dominant control by either the left or right HF. Pigeons were released from three locations prior to any experimental manipulation and released repeatedly from the same three sites as sham-lesioned control, right HF-lesioned and left HF-lesioned treatment groups. Analyses of homing performance and virtual vanishing bearings revealed no effect of either lesion treatment. A more in-depth analysis of path efficiency during the initial decision-making, en route and near home phases of a homing flight also revealed no effect of either lesion treatment. A last analysis on the learning and memory for positions along a previously flown route, a proxy for investigating the development of route fidelity, also revealed no effect of either unilateral lesion. However, independent of treatment group, some statistically significant effects were observed with respect to changes in performance across training and the different release sites. The current study revealed no detectable difference between the left and right HF-lesioned pigeons with respect to several navigational parameters of a homing flight. Although in need of supporting experimentation, the results are consistent with the hypothesis that both the left and right HF are similarly able to support several aspects of homing pigeon navigation.
DOI: 10.6084/m9.figshare.21711320
title: CODEX mouse spleen

description: Processed dataset from Goltsev et al., 2018 of CODEX spatial proteomics measurement of 9 spleen sections from healthy mice and mice with systemic lupus erythematosus.
DOI: 10.6084/m9.figshare.21711320.v5
title: CODEX mouse spleen

description: Processed dataset from Goltsev et al., 2018 of CODEX spatial proteomics measurement of 9 spleen sections from healthy mice and mice with systemic lupus erythematosus.
DOI: 10.15468/dl.5jdu28
title: Occurrence Download

description: A dataset containing 5933 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picrasma quassioides (D.Don) Benn."
 ]
}

 The dataset includes 5933 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078251-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10904594
title: adansonia_madagascariensis_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10904593
title: adansonia_madagascariensis_spades_01.fasta.gz

description: .
DOI: 10.15468/dl.stvcpm
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa maroccana Nannf."
 ]
}

 The dataset includes 38 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078252-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7hhmj9
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "TaxonKey is Intsia palembanica Miq."
 ]
}

 The dataset includes 109 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078253-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gawp86
title: Occurrence Download

description: A dataset containing 5242896 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.9_1",
 "OccurrenceStatus is Present",
 "Year 1000-2008"
 ]
}

 The dataset includes 5242896 records from 745 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078232-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ngfet
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylica keetii Pillans"
 ]
}

 The dataset includes 22 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078255-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kktdtg
title: Occurrence Download

description: A dataset containing 1278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mobula mobular (Bonnaterre, 1788)"
 ]
}

 The dataset includes 1278 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078256-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zga8xr
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa masenderana Freyn & Sint."
 ]
}

 The dataset includes 94 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078257-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urhnbd
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylica lachneaeoides Pillans"
 ]
}

 The dataset includes 144 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078259-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqe8su
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picrella glandulosa Hartley"
 ]
}

 The dataset includes 123 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078258-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfhndh
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa matsumurae Hack."
 ]
}

 The dataset includes 222 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078261-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8001206
title: Balochi Language to English Translation Dataset
DOI: 10.15468/dl.85kzwy
title: Occurrence Download

description: A dataset containing 19600 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Datos de ocurrencia de triatominos americanos del Laboratorio de Triatominos del CEPAVE (CONICET-UNLP)"
 ]
}

 The dataset includes 19600 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078260-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.atsqfu
title: Occurrence Download

description: A dataset containing 4608945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.9_1",
 "OccurrenceStatus is Present",
 "Year 2009-2013"
 ]
}

 The dataset includes 4608945 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078242-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgex6j
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylica laevigata Pillans"
 ]
}

 The dataset includes 26 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078262-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6dnsta
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picrella ignambiensis (Guillaumin) Hartley & Mabb."
 ]
}

 The dataset includes 89 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078263-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d99hz4
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa menachensis Schweinf."
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078264-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3f3rjq
title: Occurrence Download

description: A dataset containing 440971 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-02-05",
 "EventDate is less than or equal to 2024-03-06",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 440971 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078172-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fejsjm
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylica laevis (Eckl. & Zeyh.) Steud."
 ]
}

 The dataset includes 29 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078265-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukghxc
title: Occurrence Download

description: A dataset containing 294 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picrella trifoliata Baill."
 ]
}

 The dataset includes 294 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078266-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c5mf8v
title: Occurrence Download

description: A dataset containing 272374 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygonatum multiflorum (L.) All."
 ]
}

 The dataset includes 272374 records from 1612 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078254-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2v4j6u
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nematolebias whitei (Myers, 1942)"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0311700-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24dezv
title: Occurrence Download

description: A dataset containing 2923 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anemone apennina L.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2923 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051910-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.