cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57754/fdat.1tmd0-z0181
title: A semantic analysis of Spanish nonce-formations (Analysis_coll_nonce-formations_SP)

description: The resource contains a semantic analysis of Spanish nonce-formations derived with potentially collective suffixes (based on a list of hapax legomena in esTenTen11).
Metadata: List_hapaxlegomena_esTenTen11.xml
Resource: Liste_coll_HL_SP.xlsx
                       
description: Research carried out in work package C07 of the SFB 833.
DOI: 10.6084/m9.figshare.c.3788398_d5.v1
title: Additional file 5 of CVE: an R package for interactive variant prioritisation in precision oncology

description: Table S4. Csv table listing the 472 TCGA barcodes of melanoma RNA-seq cohort used for co-expression network analysis. (CSV 50 kb)
DOI: 10.6084/m9.figshare.c.3788419_d2
title: Additional file 2: Figure S1. of Whole genome sequencing reveals within-host genetic changes in paired meningococcal carriage isolates from Ethiopia

description: Bayesian analysis of population structure (BAPS) clusters of paired meningococcal carriage isolates per sequence type. Neighbor-net splits trees of allelic differences in N. meningitidis core genome MLST genes (N. meningitidis cgMLST v1.0, available at pubMLST.org). Panel A, B, C and D show sequence types (ST) ST-11, ST-53, ST-192 and ST-2880, respectively. BAPS clusters are highlighted by circles and numbered sequentially. Paired isolates from the same individual that have been assigned to different BAPS clusters are underlined and connected with dashed lines. (ZIP 56 kb)
DOI: 10.6084/m9.figshare.c.3788422_d1
title: MOESM1 of From the epidemiology of hepatitis E virus (HEV) within the swine reservoir to public health risk mitigation strategies: a comprehensive review

description: Additional file 1. HEV serological and virological prevalence in the pig population at farm and individual levels. Farm-scale prevalence figures were reported in 34 studies. Farm-scale seroprevalence ranged from 30 to 98%, while farm-scale virological prevalence ranged from 10 to 100%. Individual prevalence figures were reported in 82 studies. Individual seroprevalence ranged from 8 to 93%, whereas individual virological prevalence ranged from 1 to 89%.
DOI: 10.6084/m9.figshare.c.3788398_d5
title: Additional file 5 of CVE: an R package for interactive variant prioritisation in precision oncology

description: Table S4. Csv table listing the 472 TCGA barcodes of melanoma RNA-seq cohort used for co-expression network analysis. (CSV 50 kb)
DOI: 10.6084/m9.figshare.c.3788422_d2.v1
title: MOESM2 of From the epidemiology of hepatitis E virus (HEV) within the swine reservoir to public health risk mitigation strategies: a comprehensive review

description: Additional file 2. Evolution of HEV RNA prevalence and anti-HEV antibody prevalence according to pig age. Thirty-seven studies explored the variation of HEV virological and serological prevalence with the pig age. m: months; w: weeks; d: days.
DOI: 10.6084/m9.figshare.c.3788422_d2
title: MOESM2 of From the epidemiology of hepatitis E virus (HEV) within the swine reservoir to public health risk mitigation strategies: a comprehensive review

description: Additional file 2. Evolution of HEV RNA prevalence and anti-HEV antibody prevalence according to pig age. Thirty-seven studies explored the variation of HEV virological and serological prevalence with the pig age. m: months; w: weeks; d: days.
DOI: 10.6084/m9.figshare.c.3788344_d6.v1
title: Additional file 6 of quantGenius: implementation of a decision support system for qPCR-based gene quantification

description: Experimental data of the gene expression use case. (XLS 71 kb)
DOI: 10.6084/m9.figshare.c.3788437_d4.v1
title: Additional file 4: of MAL gene overexpression as a marker of high-grade serous ovarian carcinoma stem-like cells that predicts chemoresistance and poor prognosis

description: Up-regulated and down-regulated genes with a corrected p-value of less than 0.01 and expressed at least two fold higher and lower in OVA-BS4 spheroids compared to parent OVA-BS4. (XLS 1147Â kb)
DOI: 10.6084/m9.figshare.c.3788344_d7
title: Additional file 7: of quantGenius: implementation of a decision support system for qPCR-based gene quantification

description: Comparison of gene expression values calculated by quantGenius and other standard methods. (XLS 49 kb)
DOI: 10.15468/dl.emsgxu
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alepocephalus rostratus Risso, 1820",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 27 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038724-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3788437_d4
title: Additional file 4: of MAL gene overexpression as a marker of high-grade serous ovarian carcinoma stem-like cells that predicts chemoresistance and poor prognosis

description: Up-regulated and down-regulated genes with a corrected p-value of less than 0.01 and expressed at least two fold higher and lower in OVA-BS4 spheroids compared to parent OVA-BS4. (XLS 1147Â kb)
DOI: 10.6084/m9.figshare.c.3788455_d2.v1
title: MOESM2 of Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy

description: Additional file 2. Contains results of all calculations and combinations of the tools that were used but were not shown in the manuscript.
DOI: 10.6084/m9.figshare.c.3788455_d2
title: MOESM2 of Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy

description: Additional file 2. Contains results of all calculations and combinations of the tools that were used but were not shown in the manuscript.
DOI: 10.6084/m9.figshare.c.3788482_d1
title: Additional file 1: of The abundance of the Lyme disease pathogen Borrelia afzelii declines over time in the tick vector Ixodes ricinus

description: Table S1. List of definitions for the variables that appear in the column headings of Tables S2, S3 and S4. Table S2. Raw data of the Borrelia afzelii spirochete loads for the 1-month-old Ixodes ricinus nymphs and the 4-month-old I. ricinus nymphs used to create Figs. 1 and 2. Table S3. Raw data of the B. afzelii spirochete loads for the engorged larval ticks and the resultant flat nymphs used to create Fig. 3a and the raw data of the B. afzelii spirochete loads for the flat nymphs and the resultant adult ticks used to create Fig. 3b. Table S4. Raw data of the B. afzelii spirochete loads for the wild I. ricinus nymphs. (XLSX 96 kb)
DOI: 10.6084/m9.figshare.c.3788485_d1
title: Additional file 1: of Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening

description: Comprehensive list of gene expression values (in FPKM) 18 seed libraries representing darkening and non-darkening RILs. (XLSX 24083 kb)
DOI: 10.6084/m9.figshare.c.3788485_d4.v1
title: Additional file 4: of Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening

description: List of genes upregulated in seed coats of both non-darkening and darkening cranberry bean RILs at different stages of seed development. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3788485_d3.v1
title: Additional file 3: of Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening

description: List of genes upregulated in seed coats of non-darkening relative to darkening cranberry bean RILs as a function of seed development. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3788485_d2
title: Additional file 2: of Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening

description: List of genes upregulated in seed coats of darkening relative to non-darkening cranberry bean RILs as a function of seed development. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.c.3788485_d3
title: Additional file 3: of Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening

description: List of genes upregulated in seed coats of non-darkening relative to darkening cranberry bean RILs as a function of seed development. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3788485_d4
title: Additional file 4: of Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening

description: List of genes upregulated in seed coats of both non-darkening and darkening cranberry bean RILs at different stages of seed development. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3788485_d5.v1
title: Additional file 5: of Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening

description: Differentially expressed genes belonging to cluster 1 to 14 and their respective seed coat transcript abundance levels at each developmental stage for darkening and non-darkening cranberry beans RILs. (XLSX 314 kb)
DOI: 10.6084/m9.figshare.c.3788485_d5
title: Additional file 5: of Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening

description: Differentially expressed genes belonging to cluster 1 to 14 and their respective seed coat transcript abundance levels at each developmental stage for darkening and non-darkening cranberry beans RILs. (XLSX 314 kb)
DOI: 10.15468/dl.4yqunz
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-9.89424 34.22981,1.04795 34.22981,1.04795 40.61404,-9.89424 40.61404,-9.89424 34.22981))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Barbarea vulgaris (L.) W.T.Aiton"
 ]
}

 The dataset includes 15 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038725-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3788512_d1.v1
title: Additional file 1: of Intraperitoneal implantation of life-long telemetry transmitters in three rehabilitated harbor seal pups

description: All results from analyses of blood samples in Microsoft Excel workbook format (XLSX 29Â kb).
DOI: 10.6084/m9.figshare.c.3788512_d1
title: Additional file 1: of Intraperitoneal implantation of life-long telemetry transmitters in three rehabilitated harbor seal pups

description: All results from analyses of blood samples in Microsoft Excel workbook format (XLSX 29Â kb).
DOI: 10.15468/dl.tm769h
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alepocephalus tenebrosus Gilbert, 1892",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038726-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3788539_d4.v1
title: Additional file 2: Table S1. of Optimizing complex phenotypes through model-guided multiplex genome engineering

description: Prioritized coding reversion categories. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3788539_d4
title: Additional file 2: Table S1. of Optimizing complex phenotypes through model-guided multiplex genome engineering

description: Prioritized coding reversion categories. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3788539_d5.v1
title: Additional file 3: Table S2. of Optimizing complex phenotypes through model-guided multiplex genome engineering

description: Table of 127 mutations targeted in the 50-cycle MAGE experiment. (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.c.3788557_d2.v1
title: Additional file 2: of Limitations of a metabolic network-based reverse ecology method for inferring hostâ  pathogen interactions

description: List of non-pathogens used in this study. See the Additional file 1 caption for a description of table elements (XLSX 65 kb).
DOI: 10.6084/m9.figshare.c.3788557_d1.v1
title: Additional file 1: of Limitations of a metabolic network-based reverse ecology method for inferring hostâ  pathogen interactions

description: List of pathogens used in this study. This table shows the species name, Kyoto Encyclopedia of Genes and Genomes (KEGG) organism identifier (see www.genome.jp/kegg/catalog/org_list.html ), host classification, oxygen requirement, genome size [bp], number of total genes [count], BSSHM, BSSMH, MCIHM, MCIMH, number of nodes, number of directed edges, and network modularity Q (XLSX 45 kb).
DOI: 10.11588/data/qoumab
title: Begleitdaten zu: "PIA 1. Bericht des Pilotprojekts Inwertsetzung Ausgrabungen (Materialien zur Archäologie in Baden-Württemberg, Bd. 1)

description: 1) Neolithische Siedlung Cleebronn "Langwiesen IV": Fotodokumentation von Silexfunden 2) Frühmittelalterliches Gräberfeld Cleebronn "Langwiesen IV": Befundzeichnungen, Röntgenaufnahmen und Fotos von Funden 3) Römische Siedlung Sindelfingen: Plan der Ausgrabung und Datenerfassungsblätter der Holzfunde
DOI: 10.6084/m9.figshare.c.3788539_d8
title: Additional file 6: Table S5. of Optimizing complex phenotypes through model-guided multiplex genome engineering

description: List of amber reversions tested. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3788539_d9.v1
title: Additional file 7: Table S6. of Optimizing complex phenotypes through model-guided multiplex genome engineering

description: List of top six mutations used to create C321.DA.opt. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3788539_d9
title: Additional file 7: Table S6. of Optimizing complex phenotypes through model-guided multiplex genome engineering

description: List of top six mutations used to create C321.DA.opt. (XLSX 36Â kb)
DOI: 10.57754/fdat.by4e9-1xx51
title: A semantic analysis of Italian nonce-formations (Analysis_coll_nonce-formations_IT)

description: The resource contains a semantic analysis of Italian nonce-formations derived with potentially collective suffixes (based on a list of hapax legomena in itTenTen16).
Metadata: List_hapaxlegomena_itTenTen16.xml
Resource: Liste_coll_HL_IT.xlsx
description: Research carried out in work package C07 of the SFB 833.
DOI: 10.6084/m9.figshare.c.3788539_d10.v1
title: Additional file 8: Table S7. of Optimizing complex phenotypes through model-guided multiplex genome engineering

description: List of additional mutations in C321.DA.opt. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3788584_d1.v1
title: Additional file 1: of Modelling the influence of climate on malaria occurrence in Chimoio Municipality, Mozambique

description: Data.Table S1. Chimoio malaria and climate data from 2008 to 2014. Table S2. Maximum temperature for Chimoio 2008 to 2014. Table S3. Minimum temperature for Chimoio 2008 to 2014. Table S4. Mean temperature for Chimoio 2008 to 2014. Table S5. Relative humidity for Chimoio 2008 to 2014. Table S6. Wind speed for Chimoio 2008 to 2014. Table S7. Visibility for Chimoio 2008 to 2014. Table S8. Minimum temperature for Chimoio 2008 to 2014. Table S9. Malaria in Chimoio 2008 to 2014. (XLSX 189 kb)
DOI: 10.6084/m9.figshare.c.3788584_d2.v1
title: Additional file 2: of Modelling the influence of climate on malaria occurrence in Chimoio Municipality, Mozambique

description: R script. (TXT 6 kb)
DOI: 10.6084/m9.figshare.c.3788539_d10
title: Additional file 8: Table S7. of Optimizing complex phenotypes through model-guided multiplex genome engineering

description: List of additional mutations in C321.DA.opt. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3788584_d1
title: Additional file 1: of Modelling the influence of climate on malaria occurrence in Chimoio Municipality, Mozambique

description: Data.Table S1. Chimoio malaria and climate data from 2008 to 2014. Table S2. Maximum temperature for Chimoio 2008 to 2014. Table S3. Minimum temperature for Chimoio 2008 to 2014. Table S4. Mean temperature for Chimoio 2008 to 2014. Table S5. Relative humidity for Chimoio 2008 to 2014. Table S6. Wind speed for Chimoio 2008 to 2014. Table S7. Visibility for Chimoio 2008 to 2014. Table S8. Minimum temperature for Chimoio 2008 to 2014. Table S9. Malaria in Chimoio 2008 to 2014. (XLSX 189 kb)
DOI: 10.6084/m9.figshare.c.3788602_d3
title: Additional file 3: of Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi

description: Distribution of GalEa retrotransposons among fungi according to type of data analyzed. Classification was redrawn from MycoCosm. The 30 assembled genomes analyzed in this study are highlights in green and assembled genomes apparently devoid of GalEa elements in red. Species in which the presence of GalEa elements was revealed by BLAST searches on partial genomic or transcriptomic data are indicated in orange with the accession number of the best hit. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3788602_d4.v1
title: Additional file 4: of Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi

description: Annotation of fungal GalEa retrotransposons. The copy number corresponds to the number of elements returned by LTRharvest. The two most frequent sequences of the CHS (Conserved Hairpin Site) CHSeq1 are given in green and blue, and their different observed derivatives are shown in light blue. Mismatches between the sequences CHSeq1 and CHSeq2 are indicated in red, including the strictly conserved A/A mismatch at the third position of CHSeq2 (in red bold). The Interval corresponds to the distance between the two reverse complementary CHS sequences. The GC content was estimated on all entire sequences of each family. (XLSX 20 kb)
DOI: 10.5281/zenodo.13989698
title: Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics: fastq & bam files - Sample  S5_Rec

description: You can find here the fastq and bam files related to the datasets used in the publication: 

In this particular upload, you can find the fastq (version1) and bam (version2) files of the two replicates of sample S5_Rec (A121573)

Valdeolivas, A., Amberg, B., Giroud, N. et al. Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics. npj Precis. Onc. 8, 10 (2024). https://doi.org/10.1038/s41698-023-00488-4
DOI: 10.5281/zenodo.14050965
title: Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics: fastq & bam files - Sample  S5_Rec

description: You can find here the fastq and bam files related to the datasets used in the publication: 

In this particular upload, you can find the fastq (version1) and bam (version2) files of the two replicates of sample S5_Rec (A121573)

Valdeolivas, A., Amberg, B., Giroud, N. et al. Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics. npj Precis. Onc. 8, 10 (2024). https://doi.org/10.1038/s41698-023-00488-4
DOI: 10.5281/zenodo.14512693
title: Gassen Apotheke Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.7qmwcg
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allosmerus elongatus (Ayres, 1854)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038727-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3788602_d4
title: Additional file 4: of Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi

description: Annotation of fungal GalEa retrotransposons. The copy number corresponds to the number of elements returned by LTRharvest. The two most frequent sequences of the CHS (Conserved Hairpin Site) CHSeq1 are given in green and blue, and their different observed derivatives are shown in light blue. Mismatches between the sequences CHSeq1 and CHSeq2 are indicated in red, including the strictly conserved A/A mismatch at the third position of CHSeq2 (in red bold). The Interval corresponds to the distance between the two reverse complementary CHS sequences. The GC content was estimated on all entire sequences of each family. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3788611_d2.v1
title: Additional file 2: Table S1. of Long-lasting effect of obesity on skeletal muscle transcriptome

description: The list of differentially expressed WSD/CR genes identified in the present study. Table S2. The list of differentially expressed CR/WSD genes identified in the present study. Table S3. Erythroid genes identified in the present study. Table S4. qRT-PCR primers used in the study. (XLSX 327 kb)
DOI: 10.6084/m9.figshare.c.3788611_d2.v2
title: Additional file 2: Table S1. of Long-lasting effect of obesity on skeletal muscle transcriptome

description: The list of differentially expressed WSD/CR genes identified in the present study. Table S2. The list of differentially expressed CR/WSD genes identified in the present study. Table S3. Erythroid genes identified in the present study. Table S4. qRT-PCR primers used in the study. (XLSX 327 kb)
DOI: 10.5281/zenodo.13991781
title: Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics: fastq files - Sample S1_Cec

description: You can find here the fastq files related to the datasets used in the publication: 

In this particular upload, you can find the fastq files of the two replicates of sample S1_Cec (A551763)

Valdeolivas, A., Amberg, B., Giroud, N. et al. Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics. npj Precis. Onc. 8, 10 (2024). https://doi.org/10.1038/s41698-023-00488-4