cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kqfntg
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alyxia loeseneriana Schltr."
 ]
}

 The dataset includes 109 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003807-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pohslg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "ScientificName" : [
 "is spp_list_verbatim"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031601-180131172636756/datasets/export for details.
DOI: 10.15468/dl.m9p6fh
title: Occurrence Download

description: A dataset containing 340 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Depth unlikely",
 "Issue is Individual count invalid",
 "Issue is Occurrence status inferred from individual count"
 ]
 },
 "TaxonKey is Synthemis eustalacta (Burmeister, 1839)"
 ]
}

 The dataset includes 340 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122745-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7s9cas
title: Occurrence Download

description: A dataset containing 280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia cana Maiden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 280 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003858-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.45nkbz
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ctenodecticus masferreri Bolívar, 1894"
 ]
}

 The dataset includes 19 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116488-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgidf2
title: Occurrence Download

description: A dataset containing 2029 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is India",
 "Country is Pakistan",
 "Country is Nepal",
 "Country is Bangladesh",
 "Country is Bhutan"
 ]
 },
 "TaxonKey is Falco chicquera Daudin, 1800"
 ]
}

 The dataset includes 2029 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016925-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gawjwj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aloe johannis-bernardii J.-P.Castillon"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003827-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swoy30
title: Occurrence Download

description: A dataset containing 731045 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is FishBase Database"
 ]
}

 The dataset includes 731045 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016932-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9tsx5e
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Murrayonida"
 ]
}

 The dataset includes 76 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089148-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4njtqz
title: Occurrence Download

description: A dataset containing 870815 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Urtica dioica L."
 ]
}

 The dataset includes 870815 records from 1210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016935-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28821632
title: Phylogenetic placement of Plectosphaerella plurivora HM 230 based on ITS sequences

description: ITS alignment of Plectosphaerella spp. and maximum likelihood phylogenetic tree generated by MEGA X with the K2 + G + I substitution model. Bootstrap support values were calculated from 1000 replicates.
DOI: 10.6084/m9.figshare.28821632.v1
title: Phylogenetic placement of Plectosphaerella plurivora HM 230 based on ITS sequences

description: ITS alignment of Plectosphaerella spp. and maximum likelihood phylogenetic tree generated by MEGA X with the K2 + G + I substitution model. Bootstrap support values were calculated from 1000 replicates.
DOI: 10.6084/m9.figshare.25506748
title: Additional file 2 of Comparative analysis of gene expression between mice and humans in acetaminophen-induced liver injury by integrating bioinformatics analysis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.25506748.v1
title: Additional file 2 of Comparative analysis of gene expression between mice and humans in acetaminophen-induced liver injury by integrating bioinformatics analysis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26699198
title: Additional file 3 of Comparative analysis of gene expression between mice and humans in acetaminophen-induced liver injury by integrating bioinformatics analysis

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26699198.v1
title: Additional file 3 of Comparative analysis of gene expression between mice and humans in acetaminophen-induced liver injury by integrating bioinformatics analysis

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.25506572
title: Additional file 1 of Malaria infection and predictor factors among Chadian nomads’ children

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.25506572.v1
title: Additional file 1 of Malaria infection and predictor factors among Chadian nomads’ children

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26699369
title: Additional file 3 of Malaria infection and predictor factors among Chadian nomads’ children

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26699369.v1
title: Additional file 3 of Malaria infection and predictor factors among Chadian nomads’ children

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.25511817
title: Additional file 1 of Transcriptional and metabolic effects of aspartate-glutamate carrier isoform 1 (AGC1) downregulation in mouse oligodendrocyte precursor cells (OPCs)

description: Additional file 1: Full results of differential expression analysis.
DOI: 10.6084/m9.figshare.25511817.v1
title: Additional file 1 of Transcriptional and metabolic effects of aspartate-glutamate carrier isoform 1 (AGC1) downregulation in mouse oligodendrocyte precursor cells (OPCs)

description: Additional file 1: Full results of differential expression analysis.
DOI: 10.6084/m9.figshare.25511876
title: Additional file 2 of Transcriptional and metabolic effects of aspartate-glutamate carrier isoform 1 (AGC1) downregulation in mouse oligodendrocyte precursor cells (OPCs)

description: Additional file 2: Splicing patterns and isoform prevalence for hundreds of genes.
DOI: 10.6084/m9.figshare.25511876.v1
title: Additional file 2 of Transcriptional and metabolic effects of aspartate-glutamate carrier isoform 1 (AGC1) downregulation in mouse oligodendrocyte precursor cells (OPCs)

description: Additional file 2: Splicing patterns and isoform prevalence for hundreds of genes.
DOI: 10.6084/m9.figshare.26699396
title: Additional file 3 of Transcriptional and metabolic effects of aspartate-glutamate carrier isoform 1 (AGC1) downregulation in mouse oligodendrocyte precursor cells (OPCs)

description: Additional file 3: Overall results of splicing analysis.
DOI: 10.6084/m9.figshare.26699396.v1
title: Additional file 3 of Transcriptional and metabolic effects of aspartate-glutamate carrier isoform 1 (AGC1) downregulation in mouse oligodendrocyte precursor cells (OPCs)

description: Additional file 3: Overall results of splicing analysis.
DOI: 10.6084/m9.figshare.26699399
title: Additional file 4 of Transcriptional and metabolic effects of aspartate-glutamate carrier isoform 1 (AGC1) downregulation in mouse oligodendrocyte precursor cells (OPCs)

description: Additional file 4: Metabolites quantification in cells and culture media samples.
DOI: 10.6084/m9.figshare.26699399.v1
title: Additional file 4 of Transcriptional and metabolic effects of aspartate-glutamate carrier isoform 1 (AGC1) downregulation in mouse oligodendrocyte precursor cells (OPCs)

description: Additional file 4: Metabolites quantification in cells and culture media samples.
DOI: 10.6084/m9.figshare.25511855
title: Additional file 1 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 1: Supplementary Figures. Supplementary Figures 1-6 and Supplementary figure legends.
DOI: 10.6084/m9.figshare.25511855.v1
title: Additional file 1 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 1: Supplementary Figures. Supplementary Figures 1-6 and Supplementary figure legends.
DOI: 10.6084/m9.figshare.25511879
title: Additional file 2 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 2: Table 1. This table contains the differentially expressed (DE) genes between fixed and fresh human peripheral blood mononuclear cells (PBMCs), considering all cell populations. The differential expression analysis was performed using Seurat MAST, and genes with an FDR adjusted p-value &lt; 0.05 and present in at least 10% of cells were considered DE (see Methods). Genes with positive Log2FC indicate higher expression in fixed PBMCs, while those with negative Log2FC are DE in fresh PBMCs.
DOI: 10.6084/m9.figshare.25511879.v1
title: Additional file 2 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 2: Table 1. This table contains the differentially expressed (DE) genes between fixed and fresh human peripheral blood mononuclear cells (PBMCs), considering all cell populations. The differential expression analysis was performed using Seurat MAST, and genes with an FDR adjusted p-value &lt; 0.05 and present in at least 10% of cells were considered DE (see Methods). Genes with positive Log2FC indicate higher expression in fixed PBMCs, while those with negative Log2FC are DE in fresh PBMCs.
DOI: 10.6084/m9.figshare.26699411
title: Additional file 3 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 3: Table 2. This table contains differentially expressed (DE) genes between fixed and fresh human PBMCs, separated by cell population. The analysis was performed using Seurat MAST, with genes considered as DE with a FDR adjusted p-value &lt; 0.05 and present in at least 10% of cells (see Methods). A positive Log2FC value indicates higher expression in fixed PBMCs, while a negative value indicates differential expression in fresh PBMCs.
DOI: 10.6084/m9.figshare.26699411.v1
title: Additional file 3 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 3: Table 2. This table contains differentially expressed (DE) genes between fixed and fresh human PBMCs, separated by cell population. The analysis was performed using Seurat MAST, with genes considered as DE with a FDR adjusted p-value &lt; 0.05 and present in at least 10% of cells (see Methods). A positive Log2FC value indicates higher expression in fixed PBMCs, while a negative value indicates differential expression in fresh PBMCs.
DOI: 10.6084/m9.figshare.26699414
title: Additional file 4 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 4: Table 3. This table contains differentially expressed (DE) genes for mouse tissue comparisons, considering all cell populations. The comparisons include: 1) fixed versus fresh lung samples, 2) fixed versus fresh colon samples, 3) fixed compared to cryopreserved (cryo), 4) fixed/cryo versus cryo, and 5) fixed/cryo compared with fixed on lung samples. The statistical analysis was performed using Seurat MAST with genes considered DE if they had an FDR adjusted p-value &lt; 0.05 and were present in at least 10% of cells (see Methods). The results include positive Log2FC values indicating higher expression in the first condition mentioned, while negative values indicate higher expression in the second condition mentioned.
DOI: 10.6084/m9.figshare.26699414.v1
title: Additional file 4 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 4: Table 3. This table contains differentially expressed (DE) genes for mouse tissue comparisons, considering all cell populations. The comparisons include: 1) fixed versus fresh lung samples, 2) fixed versus fresh colon samples, 3) fixed compared to cryopreserved (cryo), 4) fixed/cryo versus cryo, and 5) fixed/cryo compared with fixed on lung samples. The statistical analysis was performed using Seurat MAST with genes considered DE if they had an FDR adjusted p-value &lt; 0.05 and were present in at least 10% of cells (see Methods). The results include positive Log2FC values indicating higher expression in the first condition mentioned, while negative values indicate higher expression in the second condition mentioned.
DOI: 10.6084/m9.figshare.26699417
title: Additional file 5 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 5: Table 4. This table contains the list of differentially expressed (DE) genes between fixed and fresh mouse lung samples, categorized by cell population. The test was performed using Seurat MAST, where genes with a FDR adjusted p-value &lt; 0.05 and present in at least 10% of cells were considered as DE (see Methods). The Log2FC values indicate the direction of expression change, where positive values indicate higher expression in fixed samples and negative values indicate higher expression in fresh samples.
DOI: 10.6084/m9.figshare.26699417.v1
title: Additional file 5 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 5: Table 4. This table contains the list of differentially expressed (DE) genes between fixed and fresh mouse lung samples, categorized by cell population. The test was performed using Seurat MAST, where genes with a FDR adjusted p-value &lt; 0.05 and present in at least 10% of cells were considered as DE (see Methods). The Log2FC values indicate the direction of expression change, where positive values indicate higher expression in fixed samples and negative values indicate higher expression in fresh samples.
DOI: 10.6084/m9.figshare.26699420
title: Additional file 6 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 6: Table 5. This table contains the results of gene set enrichment analysis (GSEA) between fixed and fresh mouse lung samples by cell population. The analysis was performed using the fgsea package and multiple gene sets from MSigDB. Gene sets containing 10-300 genes were included, and only results with a FDR adjusted p-value &lt; 0.05 were considered if they contained &gt;5 overlapping genes, which represents &gt;15% of the gene set (see Methods).
DOI: 10.6084/m9.figshare.26699420.v1
title: Additional file 6 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 6: Table 5. This table contains the results of gene set enrichment analysis (GSEA) between fixed and fresh mouse lung samples by cell population. The analysis was performed using the fgsea package and multiple gene sets from MSigDB. Gene sets containing 10-300 genes were included, and only results with a FDR adjusted p-value &lt; 0.05 were considered if they contained &gt;5 overlapping genes, which represents &gt;15% of the gene set (see Methods).
DOI: 10.6084/m9.figshare.26699423
title: Additional file 7 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 7: Table 6. This table contains the differentially expressed (DE) genes between fixed and fresh mouse colon samples, analyzed by cell population using Seurat MAST. Genes were considered DE if they had an FDR adjusted p-value &lt; 0.05 and were present in at least 10% of cells (see Methods). The Log2FC value indicates whether the gene is more highly expressed in fixed (positive values) or fresh (negative values) samples.
DOI: 10.6084/m9.figshare.26699423.v1
title: Additional file 7 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 7: Table 6. This table contains the differentially expressed (DE) genes between fixed and fresh mouse colon samples, analyzed by cell population using Seurat MAST. Genes were considered DE if they had an FDR adjusted p-value &lt; 0.05 and were present in at least 10% of cells (see Methods). The Log2FC value indicates whether the gene is more highly expressed in fixed (positive values) or fresh (negative values) samples.
DOI: 10.6084/m9.figshare.26699426
title: Additional file 8 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 8: Table 7. This table contains the results of gene set enrichment analysis (GSEA) between fixed and fresh mouse colon samples by cell population. The analysis was performed using the fgsea package and multiple gene sets from MSigDB. Gene sets containing 10-300 genes were included, and results were considered significant if they had an FDR adjusted p-value &lt; 0.05 and if &gt;5 genes from the gene set overlapped with the differentially expressed genes, representing more than 15% of the gene set (see Methods).
DOI: 10.6084/m9.figshare.26699426.v1
title: Additional file 8 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 8: Table 7. This table contains the results of gene set enrichment analysis (GSEA) between fixed and fresh mouse colon samples by cell population. The analysis was performed using the fgsea package and multiple gene sets from MSigDB. Gene sets containing 10-300 genes were included, and results were considered significant if they had an FDR adjusted p-value &lt; 0.05 and if &gt;5 genes from the gene set overlapped with the differentially expressed genes, representing more than 15% of the gene set (see Methods).
DOI: 10.6084/m9.figshare.26699429
title: Additional file 9 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

description: Additional file 9: Table 8. This table contains differentially expressed (DE) genes between fixed/cryo and cryo mouse lung samples, analyzed by cell population. The test was performed with Seurat MAST, and genes were considered DE with a FDR adjusted p-value &lt; 0.05, and present in at least 10% of cells (see Methods). A positive Log2FC indicates higher expression in fixed or fixed/cryo samples, whereas negative values indicate differential expression in cryo or fixed samples.
DOI: 10.15468/dl.e2u5j9
title: Occurrence Download

description: A dataset containing 653 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlomis brachyodon (Boiss.) Zohary ex Rech.f."
 ]
}

 The dataset includes 653 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036291-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y943bj
title: Occurrence Download

description: A dataset containing 76524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is International Barcode of Life project (iBOL)",
 "GadmLevel0Gid is NOR"
 ]
}

 The dataset includes 76524 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109073-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7s23k
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parapachygone longifolia (F.M.Bailey) Forman"
 ]
}

 The dataset includes 110 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031949-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zgem78
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Semipallium dianae (Crandall, 1979)"
 ]
}

 The dataset includes 191 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109076-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbcmyp
title: Occurrence Download

description: A dataset containing 1406 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kickxia aegyptiaca (L.) Nábelek"
 ]
}

 The dataset includes 1406 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036306-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpnuth
title: Occurrence Download

description: A dataset containing 585 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Serratina capsoides (Lamarck, 1818)"
 ]
}

 The dataset includes 585 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109089-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnbw65
title: Occurrence Download

description: A dataset containing 28453 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthemis cotula L."
 ]
}

 The dataset includes 28453 records from 729 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036309-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.