cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3622220_d4
title: Additional file 12: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: Complete list of 2140 genes found to be significantly upregulated upon a timecourse of P4 treatment in E2 pretreated cells. (XLS 974 kb)
DOI: 10.15468/dl.uqsv7s
title: Occurrence Download

description: A dataset containing 1302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Puffinus tenuirostris (Temminck, 1836)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1302 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032177-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3622049_d6
title: Additional file 6: Table S6. of Identification of miRNAs and their targets through high-throughput sequencing and degradome analysis in male and female Asparagus officinalis

description: Primers of real time qRT-PCR analysis for asparagus miRNAs, Table S7. Primers for qRT-PCR analysis for some selected target genes; Table S8. Primers for RLM-5â ˛ RACE experiment. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3622049_d5
title: Additional file 1: Table S1. of Identification of miRNAs and their targets through high-throughput sequencing and degradome analysis in male and female Asparagus officinalis

description: Conserved and novel miRNAs identified from A. officinalis; Table S2. Pre-miRNA sequences of conserved miRNAs identified from A. officinalis; Table S3. Predicted novel miRNAs and their pre-miRNA sequences in A. officinalis. (XLS 131 kb)
DOI: 10.6084/m9.figshare.c.3622028_d5
title: Additional file 5: of CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data

description: The number and cellularity of underlying clonal clusters for all simulated mixtures. (XLS 28 kb)
DOI: 10.6084/m9.figshare.c.3622028_d6
title: Additional file 4: of CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data

description: Simulated mixtures with combinations of four genomes. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3622049_d2
title: Additional file 4: Table S5. of Identification of miRNAs and their targets through high-throughput sequencing and degradome analysis in male and female Asparagus officinalis

description: GO term analysis for the whole collection of asparagus miRNA targets identified by degradome sequencing. The target genes are classified into biological process, cellular component and molecular function. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3622028_d3
title: Additional file 7: of CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data

description: Four amplified mutations in sample SA052. (XLS 23 kb)
DOI: 10.6084/m9.figshare.c.3622028_d4
title: Additional file 3: of CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data

description: Detailed aberration information of each simulated genome. (XLS 36 kb)
DOI: 10.6084/m9.figshare.c.3622049_d1
title: Additional file 3: Table S4. of Identification of miRNAs and their targets through high-throughput sequencing and degradome analysis in male and female Asparagus officinalis

description: Target genes of miRNAs identified in asparagus using high-throughput degradome sequencing analysis. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3622028_d2
title: Additional file 6: of CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data

description: Mappings between mutations and copy number detections of the CNA-calling methods. (XLS 65 kb)
DOI: 10.6084/m9.figshare.c.3621731_d2
title: Additional file 2: Table S9. of Argonaute 2 and nasopharyngeal carcinoma: a genetic association study and functional analysis

description: Genes with significantly altered expression following AGO2 knockdown in CNE2Z cells. (XLS 208Â kb)
DOI: 10.6084/m9.figshare.c.3621701_d5
title: Additional file 4: Table S3. of Single-stranded DNA binding protein Ssbp3 induces differentiation of mouse embryonic stem cells into trophoblast-like cells

description: Shared or specific DEGs induced by Ssbp3, Cdx2, or Gata3 overexpression. (XLSX 110 kb)
DOI: 10.6084/m9.figshare.c.3621686_d6
title: Additional file 5: Table S5. of A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice

description: Pair-wise correlation analysis of RDP1 disease reactions evaluated under in the field vs. in the growth chamber. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3621686_d5
title: Additional file 1: Table S1. of A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice

description: Rice blast evaluation of the RDP1 in three blast nurseries in the field. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3621686_d4
title: Additional file 2: Table S2 of A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice

description: Forty rice cultivars that were resistant in all three blast nurseries in the field. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3621686_d3
title: Additional file 3: Table S3. of A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice

description: Information on the 74 candidate blast resistant genes in LAFBRs. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3621701_d1
title: Additional file 5: Table S4. of Single-stranded DNA binding protein Ssbp3 induces differentiation of mouse embryonic stem cells into trophoblast-like cells

description: MGI Batch Reportâ  mammalian phenotype (MP) ontology of the upregulated genes induced by Ssbp3 overexpression. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3621686_d2
title: Additional file 6: Table S6. of A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice

description: The SNP haplotypes of the 20 highly resistant cultivars in the 16 LAFBRs. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3621686_d1
title: Additional file 4: Table S4. of A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice

description: The 12 strong candidate genes in the LAFBRs that are up-regulated or down-regulated in the rice-rice blast incompatible interaction. (XLSX 10 kb)
DOI: 10.15468/dl.9hb939
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Procellaria tenuirostris Temminck, 1836",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032178-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3621476_d4
title: Additional file 2: of Multi-omics analysis on the pathogenicity of Enterobacter cloacae ENHKU01 isolated from sewage outfalls along the Ningbo coastline

description: Primer sequence for RT-PCR (XLS 28 kb)
DOI: 10.6084/m9.figshare.c.3621476_d2
title: Additional file 3: of Multi-omics analysis on the pathogenicity of Enterobacter cloacae ENHKU01 isolated from sewage outfalls along the Ningbo coastline

description: Differentially expressed protiens upon three treatment as identified by MALDI-TOF-MS/MS (XLS 77 kb)
DOI: 10.6084/m9.figshare.c.3621476_d3
title: Additional file 4: of Multi-omics analysis on the pathogenicity of Enterobacter cloacae ENHKU01 isolated from sewage outfalls along the Ningbo coastline

description: The correlation of expression between protiens and genes (XLS 40 kb)
DOI: 10.15468/dl.b2s3uk
title: Occurrence Download

description: A dataset containing 1266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ardenna tenuirostris (Temminck, 1836)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1266 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032179-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3621311_d1
title: Additional file 1: of Fish oil alleviated high-fat dietâ  induced non-alcoholic fatty liver disease via regulating hepatic lipids metabolism and metaflammation: a transcriptomic study

description: Table S1. The nutrient composition, energy ratio and fatty acid profiles of experimental diets. Table S2. Primers used in this study. Figure S3. The weekly body weight change of experiment animals. Table S4. Differentially expressed genes between WD group and CON group. Table S5. Differentially expressed genes between FOH group and WD group. Table S6. Upregulated DEGs (FOH vs. WD) implicated in the enrichedgene ontology processes. Table S7. Downregulated DEGs (FOH vs. WD) implicated in the enrichedgene ontology processes.Â (ZIP 236 kb)
DOI: 10.6084/m9.figshare.c.3621302_d1
title: Additional file 1: of Does size really matter? A sensitivity analysis of number of seeds in a respondent-driven sampling study of gay, bisexual and other men who have sex with men in Vancouver, Canada

description: Supplemental Material. (XLSX 823 kb)
DOI: 10.6084/m9.figshare.c.3621284_d2
title: Additional file 2: of Event-specific detection of transgenic potato AV43-6-G7 using real-time and digital PCR methods

description: The copies of endogene and flanking sequence were separately measured using ddPCR in absolute sensitivity analysis. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3621269_d5
title: Additional file 1: of High-throughput sequencing and degradome analysis reveal altered expression of miRNAs and their targets in a male-sterile cybrid pummelo (Citrus grandis)

description: Information of identified known miRNAs in twelve libraries, including sequences, length, expression abundance of miRNAs and fold change and p value between HBP and G1â  +â  HBP in three stages. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.c.3621269_d4
title: Additional file 6: of High-throughput sequencing and degradome analysis reveal altered expression of miRNAs and their targets in a male-sterile cybrid pummelo (Citrus grandis)

description: All the primers used in this study including qRT-PCR, RLM-5â  RACE and Northern blot. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3621140_d1
title: Additional file 1 of HMMvar-func: a new method for predicting the functional outcome of genetic variants

description: Supplementary Tables. (XLSX 323 kb)
DOI: 10.6084/m9.figshare.c.3621122_d8
title: Additional file 6: of Tandem amino acid repeats in the green anole (Anolis carolinensis) and other squamates may have a role in increasing genetic variability

description: The list of all the identified amino acid repeats in the green anole orthologous data set. (CSV 553 kb)
DOI: 10.6084/m9.figshare.c.3621122_d6
title: Additional file 2: of Tandem amino acid repeats in the green anole (Anolis carolinensis) and other squamates may have a role in increasing genetic variability

description: The list of all the identified amino acid repeats in the green anole proteome. (CSV 1122 kb)
DOI: 10.6084/m9.figshare.c.3621113_d5
title: Additional file 1: Table S1. of Genetic architecture of the maize kernel row number revealed by combining QTL mapping using a high-density genetic map and bulked segregant RNA sequencing

description: KRNs for the F2 population, the two pools, and the RIL population. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3621122_d3
title: Additional file 8: of Tandem amino acid repeats in the green anole (Anolis carolinensis) and other squamates may have a role in increasing genetic variability

description: The list of all the identified amino acid repeats in the mouse orthologous data set. (CSV 527 kb)
DOI: 10.6084/m9.figshare.c.3621122_d4
title: Additional file 16: of Tandem amino acid repeats in the green anole (Anolis carolinensis) and other squamates may have a role in increasing genetic variability

description: The list of identified amino acid repeats in the Hox family. (CSV 96 kb)
DOI: 10.6084/m9.figshare.c.3621113_d4
title: Additional file 2: Table S2. of Genetic architecture of the maize kernel row number revealed by combining QTL mapping using a high-density genetic map and bulked segregant RNA sequencing

description: Rules of genotype coding used in genotyping F2 population by SLAF-seq. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3621122_d2
title: Additional file 11: of Tandem amino acid repeats in the green anole (Anolis carolinensis) and other squamates may have a role in increasing genetic variability

description: The list of all the identified amino acid repeats in the Western clawed frog orthologous data set. (CSV 286 kb)
DOI: 10.6084/m9.figshare.c.3621122_d1
title: Additional file 7: of Tandem amino acid repeats in the green anole (Anolis carolinensis) and other squamates may have a role in increasing genetic variability

description: The list of all the identified amino acid repeats in the human orthologous data set. (CSV 540 kb)
DOI: 10.6084/m9.figshare.c.3621113_d1
title: Additional file 6: Table S3. of Genetic architecture of the maize kernel row number revealed by combining QTL mapping using a high-density genetic map and bulked segregant RNA sequencing

description: Protein coding genes within four QTL identified in the F2 population. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3621074_d4
title: Additional file 2: Table S2. of Cirrhosis related functionality characteristic of the fecal microbiota as revealed by a metaproteomic approach

description: Protein identification with peptide masses searched against the publically available database for Uniprot-Human database (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.c.3621074_d3
title: Additional file 1: Table S1. of Cirrhosis related functionality characteristic of the fecal microbiota as revealed by a metaproteomic approach

description: Protein identification with peptide masses searched against the publically available database for Uniprot-Bacteria database (XLSX 635Â kb)
DOI: 10.6084/m9.figshare.c.3621020_d6
title: Additional file 1: Table S1. of Complete sequence and detailed analysis of the first indigenous plasmid from Xanthomonas oryzae pv. oryzicola

description: Putative ORFs of pXOCgx01. (XLSX 22 kb)
DOI: 10.15468/dl.mvwx43
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Istiophorus platypterus (Shaw, 1792)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032180-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3620780_d1
title: Additional file 3: of Efficacy and safety of psychostimulants for amphetamine and methamphetamine use disorders: a systematic review and meta-analysis

description: Data extraction form. The completed pilot-tested data extraction form includes the extracted details about populations, methods, interventions, comparators, outcomes and risk of bias assessment of included studies.
DOI: 10.6084/m9.figshare.c.3620732_d2
title: Additional file 2: of Automatic classification of registered clinical trials towards the Global Burden of Diseases taxonomy of diseases and injuries

description: Classification towards the 28-class grouping of GBD categories of all interventional trials registered at WHO ICTRP before February 2014. Classification of N = 109,603 clinical trials using the best-performing version of the classifier (using the Word Sense Disambiguation server, the expert-based enrichment database and the priority to the health condition field. (XLSX 12447 kb)
DOI: 10.6084/m9.figshare.c.3620654_d1
title: Additional file 1: Table S1. of NGS in argininosuccinic aciduria detects a mutation (D145G) which drives alternative splicing of ASL: a case report study

description: 10 Variants identified in 8 urea cycle related genes by targeted array NGS. (XLSX 10 kb)
DOI: 10.15468/dl.6khe97
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((5.1688 44.99657,8.29951 44.99657,8.29951 47.25988,5.1688 47.25988,5.1688 44.99657))",
 "Month is May",
 "OccurrenceStatus is Present",
 "TaxonKey is Testudines",
 "Year 2005-2024"
 ]
}

 The dataset includes 296 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032181-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3620291_d2
title: Additional file 2: Table S2. of A preliminary study of the mechanism of nitrate-stimulated remarkable increase of rifamycin production in Amycolatopsis mediterranei U32 by RNA-seq

description: Transcriptional profiles of genes for secondary metabolisms except for the rifamycin SV biosynthesis in A. mediterranei U32.
DOI: 10.6084/m9.figshare.c.3620291_d1
title: Additional file 1: Table S1. of A preliminary study of the mechanism of nitrate-stimulated remarkable increase of rifamycin production in Amycolatopsis mediterranei U32 by RNA-seq

description: Transcriptional profiles of genes involved in carbon metabolism, nitrogen metabolism and rifamycin SV biosynthesis in A. mediterranei U32.
DOI: 10.6084/m9.figshare.c.3620222_d10
title: Additional file 5: of A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

description: Excel workbook. Lists of gene ontology terms associated with each domain in Fig.Â 3. (XLSX 910Â kb)
DOI: 10.6084/m9.figshare.c.3620222_d9
title: Additional file 10: Table S2. of A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

description: Strains and plasmids used in this study. (XLSX 10Â kb)
DOI: 10.15468/dl.hq2w7t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xiphias platypterus Shaw, 1792",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032182-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3620093_d2
title: Additional file 6: of The strigolactone biosynthesis gene DWARF27 is co-opted in rhizobium symbiosis

description: Primer sequences of all primers used in this study. The recombination sites in the sequences are shown in italic. (CSV 1Â kb)
DOI: 10.6084/m9.figshare.c.3620093_d1
title: Additional file 7: of The strigolactone biosynthesis gene DWARF27 is co-opted in rhizobium symbiosis

description: Probe IDs used in this study as in the Medicago gene atlas. (CSV 180 bytes)
DOI: 10.6084/m9.figshare.c.3620078_d7
title: Additional file 2: Table S1. of Peripheral blood methylation profiling of female Crohn’s disease patients

description: Annotated data for the DMPs passing BH correction for the hypothesis-free approach. The location data: Illumina probe ID, chromosome, position, strand, UCSC gene symbol, UCSC genetic feature and regulatory feature, are shown along with the methylation statistics: mean beta difference, the p values and the BH-adjusted p. (XLSX 403 kb)
DOI: 10.6084/m9.figshare.c.3620078_d2
title: Additional file 11: Table S4. of Peripheral blood methylation profiling of female Crohn’s disease patients

description: DMPs on chromosome X. The location data: Illumina probe ID, chromosome, position, strand, UCSC gene symbol, UCSC genetic feature and regulatory feature, are shown alongside the methylation statistics: mean difference in beta, the p values and the BH-adjusted p values. DMPs associated to either PABPC5 or MIR223 are indicated in bold. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3620078_d1
title: Additional file 7: Table S5. of Peripheral blood methylation profiling of female Crohn’s disease patients

description: Annotated data for the DMPs passing BH-correction for the hypothesis-driven approach. The location data: Illumina probe ID, chromosome, position, strand, UCSC gene symbol, UCSC genetic feature and regulatory feature, are shown alongside the methylation statistics: mean difference in beta, the p values and the BH-adjusted p values calculated for the hypothesis-free approach and the hypothesis-driven approach. (XLSX 26 kb)
DOI: 10.15468/dl.nxwsd6
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Economic Plants of Malawi"
 ]
}

 The dataset includes 65 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032183-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3619856_d4
title: Additional file 10: of Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂)

description: GO enrichment of DEGs between the livers of Hybrid F1 and paternal E. lanceolatus. (XLSX 464 kb)
DOI: 10.6084/m9.figshare.c.3619856_d5
title: Additional file 13: of Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂)

description: Sequences of the primers used for real-time RT-PCR and related gene sequences. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3619856_d2
title: Additional file 1: of Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂)

description: RPKMs of all genes detected in the brains and livers of three grouper species. (XLSX 4270 kb)
DOI: 10.6084/m9.figshare.c.3619856_d3
title: Additional file 2: of Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂)

description: Differentially expressed genes between the brains of Hybrid F1 and maternal E. fuscoguttatus. (XLSX 87 kb)
DOI: 10.6084/m9.figshare.c.3619709_d10
title: Additional file 6: of Transcriptome and comparative gene expression analysis of Phyllostachys edulis in response to high light

description: The list of genes and significant GO terms in five groups based on clustering affinity search technique. (XLSX 293Â kb)
DOI: 10.6084/m9.figshare.c.3619709_d9
title: Additional file 4: of Transcriptome and comparative gene expression analysis of Phyllostachys edulis in response to high light

description: Distribution of gene expression values among samples. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3619709_d8
title: Additional file 7: of Transcriptome and comparative gene expression analysis of Phyllostachys edulis in response to high light

description: The list of differentially expressed genes in three samples. (XLSX 135Â kb)
DOI: 10.6084/m9.figshare.c.3619709_d6
title: Additional file 10: of Transcriptome and comparative gene expression analysis of Phyllostachys edulis in response to high light

description: Primers of 17 selected genes from moso bamboo utilized in qRT-PCR. (XLSX 11Â kb)