cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11378745.v1
title: DATA: bias study

description: The file is in a .cvs format outputted through STATA version 16.0. The dataset is organised in the long format with the combination of the variables <b>id</b>(), <b>species</b>(), and <b>antibiotic</b>() identifying a unique record.<br>A codebook is uploaded as a separate file indicating variable labels and value labels.<br><br>The project assessed the difference in point prevalence of antimicrobial resistance (AMR) when using routine laboratory-based surveillance and results from an active population-based survey (population-based surveillance). The data are restricted to the prevalence of AMR in isolates of Escherichia coli and Klebsiella pneumonia cultured from urine samples. For the laboratory-based surveillance, all available samples were included, while the population-based surveillance included the urine from all patients presenting with sign and/or symptoms of a urinary tract infection in either the out-patient or inpatient setting. Laboratory-based surveillance used the Vitek methodology to assess resistance, while the population-based surveillance used the conventional culture methods using MacConkey agar plates incubated for 18 hours. Resistance was defined by applying the CLSI breakpoint defined in 2012. The data from both sources covered exactly the same period (1 April 2014 to 31 May 2015) in which there were no reports of outbreaks in the hospital setting.<br>
DOI: 10.6084/m9.figshare.11378607
title: Count data in UAS images from An experimental approach to evaluate the potential of drones in terrestrial mammal research: a gregarious ungulate as a study model

description: ESM 1: Count data of guanaco adults and offspring recorded by the four independent observers, by image and AGL
DOI: 10.6084/m9.figshare.11378550
title: Supplemental Materials - Pseudohyphal growth of the emerging pathogen Candida auris is triggered by genotoxic stress through the S phase checkpoint

description: Supplemental Figures S1-S10, Supplemental Tables S1-S4, and Supplementa References supporting "Pseudohyphal growth of the emerging pathogen <i>Candida auris</i> is triggered by genotoxic stress through the S phase checkpoint". - mSphere 5: e00151-20<br>
DOI: 10.6084/m9.figshare.11378610
title: Behavioural data from An experimental approach to evaluate the potential of drones in terrestrial mammal research: a gregarious ungulate as a study model

description: ESM 2: Sheet "hf": Guanaco responses at UAS approach at different combinations of AGL and speed, by group size. Sheet "scan": Percentages of animal doing each behaviour before and during the advance of the UAS, for each flight Sb.
DOI: 10.6084/m9.figshare.11378610.v1
title: Behavioural data from An experimental approach to evaluate the potential of drones in terrestrial mammal research: a gregarious ungulate as a study model

description: ESM 2: Sheet "hf": Guanaco responses at UAS approach at different combinations of AGL and speed, by group size. Sheet "scan": Percentages of animal doing each behaviour before and during the advance of the UAS, for each flight Sb.
DOI: 10.6084/m9.figshare.11378520
title: Rolled-up graphene aerogel hollow fibre arrays accelerating solar steam generation

description: An aligned graphene aerogel hollow fibre array based solar steam generation system was developed, demonstrating exceptional high efficiency for water evaporation and salt rejection under 1.0 sun irradiation.
DOI: 10.6084/m9.figshare.11378520.v2
title: Rolled-up graphene aerogel hollow fibre arrays accelerating solar steam generation

description: An aligned graphene aerogel hollow fibre array based solar steam generation system was developed, demonstrating exceptional high efficiency for water evaporation and salt rejection under 1.0 sun irradiation.
DOI: 10.6084/m9.figshare.11378517.v1
title: CT_Data_GranularMedia_SE

description: Segmented CT data of several glass bead samples.
DOI: 10.6084/m9.figshare.11378520.v1
title: Rolled-up graphene aerogel hollow fibre arrays accelerating solar steam generation

description: An aligned graphene aerogel hollow fibre array based solar steam generation system was developed, demonstrating exceptional high efficiency for water evaporation and salt rejection under 1.0 sun irradiation.
DOI: 10.6084/m9.figshare.11378433
title: Data on spatial activity dependent proton dynamics in the awake brain measured with a novel CMOS-based bio-image sensor

description: This dataset consists of one <b>.xlsx</b> spreadsheet with five tabs, and one <b>TIFF </b>image. The data relate to the performance of a CMOS-based bio-image sensor capable of measuring proton dynamics in the brain <i>in vivo </i>with high spatio-temporal resolution.<br>The Excel spreadsheet, <b>Source Data.xlsx</b>, contains the the data underlying Figures 2c, 2d, 4a, 4b, 5b, 5c from the related manuscript (described below), as well as Supplementary Figures 1c, 1d, 4b. Summarised details are as follows:<br>- Figures 2c and 2d: Changes in pH caused by visual stimuli. (drifting gratings at different orientations) at pixel-by-pixel resolution.- Figures 4a and 4b: The proportions of pixels with pH changes defined as actual changes in brain pH pooled across (a) all nine experiments in mouse brains, or (b) all three experiments in HEPES buffered saline.- Figure 5b: The number of pixels with statistically significant changes in brain pH summarised for all observations in mice or in HEPES buffered saline for each direction of visual stimulation.- Fig 5c: The number of pixels with significant changes in pH pooled across all eight drifting grating directions.- Supplementary Figure 1c: Representative voltage outputs in the three different pH calibration buffers (pH 4.01, 6.86, 9.18).- Supplementary Figure 1d: Standard deviation of voltage outputs (i.e. inter-pixel variation) in the three pH calibration buffers (pH 4.01, 6.86, 9.18) summarised across 12 sensors.- Supplementary Fig 4b: Time course change of alkaline response, neutral response, or acidic response summarised over all experiments. <br>The TIFF image, <b>Source Data_Supplementary Figure 3.tif </b>includes a mouse brain section after the insertion of the pH sensor. This TIFF image has bit depth = 16, so may require special software to correctly view/interpret.<br><br>The related publication aimed to demonstrate that spatially distinct visual stimulation, and ergo neural activity, induced distinct patterns of proton changes in the visual cortex. The publication also describes the development of a novel insertion-type CMOS-based proton image sensor with high spatial and temporal precision, which is subsequently used to perform the experiments. <br><br>
DOI: 10.6084/m9.figshare.11378550.v1
title: Supplementary Materials - Pseudohyphal growth of the emerging pathogen Candida auris is triggered by genotoxic stress through the S phase checkpoint

description: Supplementary Figures S1-S9, Supplementary Tables S1-S4, and Supplementary References supporting "Pseudohyphal growth of the emerging pathogen <i>Candida auris</i> is triggered by genotoxic stress through the S phase checkpoint"
DOI: 10.6084/m9.figshare.11378433.v1
title: Data on spatial activity dependent proton dynamics in the awake brain measured with a novel CMOS-based bio-image sensor

description: This dataset consists of one <b>.xlsx</b> spreadsheet with five tabs, and one <b>TIFF </b>image. The data relate to the performance of a CMOS-based bio-image sensor capable of measuring proton dynamics in the brain <i>in vivo </i>with high spatio-temporal resolution.<br>The Excel spreadsheet, <b>Source Data.xlsx</b>, contains the the data underlying Figures 2c, 2d, 4a, 4b, 5b, 5c from the related manuscript (described below), as well as Supplementary Figures 1c, 1d, 4b. Summarised details are as follows:<br>- Figures 2c and 2d: Changes in pH caused by visual stimuli. (drifting gratings at different orientations) at pixel-by-pixel resolution.- Figures 4a and 4b: The proportions of pixels with pH changes defined as actual changes in brain pH pooled across (a) all nine experiments in mouse brains, or (b) all three experiments in HEPES buffered saline.- Figure 5b: The number of pixels with statistically significant changes in brain pH summarised for all observations in mice or in HEPES buffered saline for each direction of visual stimulation.- Fig 5c: The number of pixels with significant changes in pH pooled across all eight drifting grating directions.- Supplementary Figure 1c: Representative voltage outputs in the three different pH calibration buffers (pH 4.01, 6.86, 9.18).- Supplementary Figure 1d: Standard deviation of voltage outputs (i.e. inter-pixel variation) in the three pH calibration buffers (pH 4.01, 6.86, 9.18) summarised across 12 sensors.- Supplementary Fig 4b: Time course change of alkaline response, neutral response, or acidic response summarised over all experiments. <br>The TIFF image, <b>Source Data_Supplementary Figure 3.tif </b>includes a mouse brain section after the insertion of the pH sensor. This TIFF image has bit depth = 16, so may require special software to correctly view/interpret.<br><br>The related publication aimed to demonstrate that spatially distinct visual stimulation, and ergo neural activity, induced distinct patterns of proton changes in the visual cortex. The publication also describes the development of a novel insertion-type CMOS-based proton image sensor with high spatial and temporal precision, which is subsequently used to perform the experiments. <br><br>
DOI: 10.6084/m9.figshare.11378550.v2
title: Supplementary Materials - Pseudohyphal growth of the emerging pathogen Candida auris is triggered by genotoxic stress through the S phase checkpoint

description: Supplementary Figures S1-S10, Supplementary Tables S1-S4, and Supplementary References supporting "Pseudohyphal growth of the emerging pathogen <i>Candida auris</i> is triggered by genotoxic stress through the S phase checkpoint"
DOI: 10.6084/m9.figshare.11378211
title: MOESM1 of Hypocenter relocation of the aftershocks of the Mw 7.5 Palu earthquake (September 28, 2018) and swarm earthquakes of Mamasa, Sulawesi, Indonesia, using the BMKG network data

description: Additional file 1. The relocated earthquake catalog for aftershocks of the Mw 7.5 Palu earthquake and swarm earthquakes of Mamasa from September 28 to November 22, 2018.
DOI: 10.6084/m9.figshare.11378550.v3
title: Supplementary Materials - Pseudohyphal growth of the emerging pathogen Candida auris is triggered by genotoxic stress through the S phase checkpoint

description: Supplementary Figures S1-S10, Supplementary Tables S1-S4, and Supplementary References supporting "Pseudohyphal growth of the emerging pathogen <i>Candida auris</i> is triggered by genotoxic stress through the S phase checkpoint"
DOI: 10.6084/m9.figshare.11378211.v1
title: MOESM1 of Hypocenter relocation of the aftershocks of the Mw 7.5 Palu earthquake (September 28, 2018) and swarm earthquakes of Mamasa, Sulawesi, Indonesia, using the BMKG network data

description: Additional file 1. The relocated earthquake catalog for aftershocks of the Mw 7.5 Palu earthquake and swarm earthquakes of Mamasa from September 28 to November 22, 2018.
DOI: 10.6084/m9.figshare.11378550.v4
title: Supplementary Materials - Pseudohyphal growth of the emerging pathogen Candida auris is triggered by genotoxic stress through the S phase checkpoint

description: Supplementary Figures S1-S10, Supplementary Tables S1-S4, and Supplementary References supporting "Pseudohyphal growth of the emerging pathogen <i>Candida auris</i> is triggered by genotoxic stress through the S phase checkpoint"
DOI: 10.6084/m9.figshare.11378550.v5
title: Supplemental Materials - Pseudohyphal growth of the emerging pathogen Candida auris is triggered by genotoxic stress through the S phase checkpoint

description: Supplemental Figures S1-S10, Supplemental Tables S1-S4, and Supplementa References supporting "Pseudohyphal growth of the emerging pathogen <i>Candida auris</i> is triggered by genotoxic stress through the S phase checkpoint". - mSphere 5: e00151-20<br>
DOI: 10.6084/m9.figshare.11378121
title: MOESM3 of Transcriptome-wide association study identifies putative elicitors/suppressor of Puccinia graminis f. sp. tritici that modulate barley rpg4-mediated stem rust resistance

description: Additional file 3. A FASTA file containing amino acid sequences of the updated gene models of Pgt using the transcript sequences generated from this study in addition to the publicly available gene models of Pgt race SCCL.
DOI: 10.6084/m9.figshare.11378121.v1
title: MOESM3 of Transcriptome-wide association study identifies putative elicitors/suppressor of Puccinia graminis f. sp. tritici that modulate barley rpg4-mediated stem rust resistance

description: Additional file 3. A FASTA file containing amino acid sequences of the updated gene models of Pgt using the transcript sequences generated from this study in addition to the publicly available gene models of Pgt race SCCL.
DOI: 10.6084/m9.figshare.11378106
title: MOESM1 of Transcriptome-wide association study identifies putative elicitors/suppressor of Puccinia graminis f. sp. tritici that modulate barley rpg4-mediated stem rust resistance

description: Additional file 1: Contains supplementary tables Table S1-S13. Microsoft Excel Workbook containing 13 tables. Table S1. Group of Pgt isolates based on their virulence on barley lines containing stem rust resistance gene rpg4/5 and/or Rpg1. Table S2. Infection type of group1 Pgt isolates on barley differential lines. Table S3. Infection type of group2 Pgt isolates on barley differential lines. Table S4. Infection type of group3 Pgt isolates on barley differential lines. Table S5. Read and mapping statistics of RAD-GBS data of Pgt Samples. Table S6. RNAseq read mapping statistics for the Pgt inoculated Harrington samples. Table S7. RNAseq read mapping statistics for the non-inoculated Harrington samples. Table S8. Differentially expressed gene in between virulent rpg4/5 and avirulent rpg4/5 inoculated sampled and its comparison with the non-inoculated controls. Table S9. Gene enrichment analysis of differentially expressed gene in virulent vs avirulent rpg4/5 inoculated Harrington in R bioconductor package TopGO, Table S10. List of gene that are differentially regulated in Rpg1 virulent isolates compared to Rpg1 avirulent isolates. Table S11. List of gene that are differentially regulated in rpg4/5 virulent isolates compared to rpg4/5 avirulent isolates. Table S12. Identification of Pgt Candidate Secreted Effector Protein (CSEP) and their classification based on level of expression. Table S13. Variants associated with Pgt virulence on rpg4/5.
DOI: 10.6084/m9.figshare.11378106.v1
title: MOESM1 of Transcriptome-wide association study identifies putative elicitors/suppressor of Puccinia graminis f. sp. tritici that modulate barley rpg4-mediated stem rust resistance

description: Additional file 1: Contains supplementary tables Table S1-S13. Microsoft Excel Workbook containing 13 tables. Table S1. Group of Pgt isolates based on their virulence on barley lines containing stem rust resistance gene rpg4/5 and/or Rpg1. Table S2. Infection type of group1 Pgt isolates on barley differential lines. Table S3. Infection type of group2 Pgt isolates on barley differential lines. Table S4. Infection type of group3 Pgt isolates on barley differential lines. Table S5. Read and mapping statistics of RAD-GBS data of Pgt Samples. Table S6. RNAseq read mapping statistics for the Pgt inoculated Harrington samples. Table S7. RNAseq read mapping statistics for the non-inoculated Harrington samples. Table S8. Differentially expressed gene in between virulent rpg4/5 and avirulent rpg4/5 inoculated sampled and its comparison with the non-inoculated controls. Table S9. Gene enrichment analysis of differentially expressed gene in virulent vs avirulent rpg4/5 inoculated Harrington in R bioconductor package TopGO, Table S10. List of gene that are differentially regulated in Rpg1 virulent isolates compared to Rpg1 avirulent isolates. Table S11. List of gene that are differentially regulated in rpg4/5 virulent isolates compared to rpg4/5 avirulent isolates. Table S12. Identification of Pgt Candidate Secreted Effector Protein (CSEP) and their classification based on level of expression. Table S13. Variants associated with Pgt virulence on rpg4/5.
DOI: 10.6084/m9.figshare.11378112
title: MOESM2 of Transcriptome-wide association study identifies putative elicitors/suppressor of Puccinia graminis f. sp. tritici that modulate barley rpg4-mediated stem rust resistance

description: Additional file 2. A FASTA file containing coding sequences of the updated gene models of Pgt using the transcript sequences generated from this study in addition to the publicly available gene models of reference genome of Pgt race SCCL.
DOI: 10.6084/m9.figshare.11378112.v1
title: MOESM2 of Transcriptome-wide association study identifies putative elicitors/suppressor of Puccinia graminis f. sp. tritici that modulate barley rpg4-mediated stem rust resistance

description: Additional file 2. A FASTA file containing coding sequences of the updated gene models of Pgt using the transcript sequences generated from this study in addition to the publicly available gene models of reference genome of Pgt race SCCL.
DOI: 10.6084/m9.figshare.11377983
title: MOESM1 of Cellular alterations identified in pluripotent stem cell-derived midbrain spheroids generated from a female patient with progressive external ophthalmoplegia and parkinsonism who carries a novel variation (p.Q811R) in the POLG1 gene

description: Additional file 1: Table S1. TMT-LC-MS raw data.
DOI: 10.6084/m9.figshare.11377983.v1
title: MOESM1 of Cellular alterations identified in pluripotent stem cell-derived midbrain spheroids generated from a female patient with progressive external ophthalmoplegia and parkinsonism who carries a novel variation (p.Q811R) in the POLG1 gene

description: Additional file 1: Table S1. TMT-LC-MS raw data.
DOI: 10.6084/m9.figshare.11377950
title: MOESM2 of MultiTex RCT – a multifaceted intervention package for protection against cotton dust exposure among textile workers – a cluster randomized controlled trial in Pakistan: study protocol

description: Additional file 2. Intervention fidelity checklist – MultiTex RCT.
DOI: 10.6084/m9.figshare.11377950.v1
title: MOESM2 of MultiTex RCT – a multifaceted intervention package for protection against cotton dust exposure among textile workers – a cluster randomized controlled trial in Pakistan: study protocol

description: Additional file 2. Intervention fidelity checklist – MultiTex RCT.
DOI: 10.6084/m9.figshare.11377932
title: MOESM2 of Transcriptome assembly from long-read RNA-seq alignments with StringTie2

description: Additional file 2: Table S1. Short-read accuracy. Table S2. Increased gap corn. Table S3. Short-read profiling. Table S4. Long-read accuracy. Table S5. Long-read profiling.
DOI: 10.6084/m9.figshare.11377932.v1
title: MOESM2 of Transcriptome assembly from long-read RNA-seq alignments with StringTie2

description: Additional file 2: Table S1. Short-read accuracy. Table S2. Increased gap corn. Table S3. Short-read profiling. Table S4. Long-read accuracy. Table S5. Long-read profiling.
DOI: 10.6084/m9.figshare.11377830
title: MOESM1 of Long segment 3D double inversion recovery (DIR) hypersignal on MRI in glaucomatous optic neuropathy

description: Additional file 1. contains data named “study data”. The study data contains all data used in this study, such as IOP and RNFL values.
DOI: 10.6084/m9.figshare.11377830.v1
title: MOESM1 of Long segment 3D double inversion recovery (DIR) hypersignal on MRI in glaucomatous optic neuropathy

description: Additional file 1. contains data named “study data”. The study data contains all data used in this study, such as IOP and RNFL values.
DOI: 10.6084/m9.figshare.11377800
title: MOESM4 of ReVac: a reverse vaccinology computational pipeline for prioritization of prokaryotic protein vaccine candidates

description: Additional file 4. Examples of control proteins used for development of the scoring scheme.
DOI: 10.6084/m9.figshare.11377794
title: MOESM3 of ReVac: a reverse vaccinology computational pipeline for prioritization of prokaryotic protein vaccine candidates

description: Additional file 3. Moraxella catarrhalis dataset.
DOI: 10.6084/m9.figshare.11377800.v1
title: MOESM4 of ReVac: a reverse vaccinology computational pipeline for prioritization of prokaryotic protein vaccine candidates

description: Additional file 4. Examples of control proteins used for development of the scoring scheme.
DOI: 10.6084/m9.figshare.11377794.v1
title: MOESM3 of ReVac: a reverse vaccinology computational pipeline for prioritization of prokaryotic protein vaccine candidates

description: Additional file 3. Moraxella catarrhalis dataset.
DOI: 10.6084/m9.figshare.11377776
title: MOESM2 of ReVac: a reverse vaccinology computational pipeline for prioritization of prokaryotic protein vaccine candidates

description: Additional file 2. Nontypeable Haemophilus influenzae dataset.
DOI: 10.6084/m9.figshare.11377776.v1
title: MOESM2 of ReVac: a reverse vaccinology computational pipeline for prioritization of prokaryotic protein vaccine candidates

description: Additional file 2. Nontypeable Haemophilus influenzae dataset.
DOI: 10.6084/m9.figshare.11377773
title: MOESM1 of ReVac: a reverse vaccinology computational pipeline for prioritization of prokaryotic protein vaccine candidates

description: Additional file 1. Control datasets used for development of the scoring scheme.
DOI: 10.6084/m9.figshare.11377773.v1
title: MOESM1 of ReVac: a reverse vaccinology computational pipeline for prioritization of prokaryotic protein vaccine candidates

description: Additional file 1. Control datasets used for development of the scoring scheme.
DOI: 10.6084/m9.figshare.11377632
title: MOESM2 of SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies

description: Additional file 2. Additional tables - Information about methodology and data used, and additional results
DOI: 10.6084/m9.figshare.11377632.v1
title: MOESM2 of SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies

description: Additional file 2. Additional tables - Information about methodology and data used, and additional results
DOI: 10.6084/m9.figshare.11377602
title: MOESM1 of Role of membrane compartment occupied by Can1 (MCC) and eisosome subdomains in plant pathogenicity of the necrotrophic fungus Alternaria brassicicola

description: Additional file 1: Table S1: List of primers used in this study.
DOI: 10.6084/m9.figshare.11377590
title: MOESM1 of Systematic review on the needle and suture types for uterine compression sutures: a literature review

description: Additional file 1: Table S1. Detailed information of the sutures and needles in published studies
DOI: 10.6084/m9.figshare.11377602.v1
title: MOESM1 of Role of membrane compartment occupied by Can1 (MCC) and eisosome subdomains in plant pathogenicity of the necrotrophic fungus Alternaria brassicicola

description: Additional file 1: Table S1: List of primers used in this study.
DOI: 10.6084/m9.figshare.11377584
title: MOESM3 of Genetic tool for fate mapping of Oct4 (Pou5f1)-expressing cells and their progeny past the pluripotency stage

description: Additional file 3. Characterization of differentiated NSC cells and induced pluripotent stem cells. (a) q PCR analysis of the expression of the markers Oct4 and Sox2 in undifferentiated ESCs and differentiated NSC-like cells. Results are expressed as mean +/− SEM (b) Immunocytochemistry against Nestin (green) and Sox2 (red) markers in differentiated NSC. (c) Immunofluorescence staining against Oct4 (Magenta) and Nanog (Green) in the cells with inactive tracing system (left) and cells activating tdTomato expression (right). Note, that cells with bright magenta signals – non-iPSC proliferating cells overexpressing Oct4 during reprogramming procedure.