DOI: 10.5061/dryad.c3sg55p
title: Data from: Sympatric parasites have similar host-associated, but asynchronous, patterns of diversification

description: Parasitism is a common symbiotic interaction across diverse natural
 systems. Using a comparative evolutionary approach, we investigated the
 contributions of both host phylogeny and abiotic factors towards
 diversification of phylogenetically independent endoparasites that inhabit
 essentially the same physical space. We tested for host-parasite and
 parasite-parasite phylogenetic concordance in western North American
 chipmunks (Rodentia: Sciuridae) and two distantly related species of
 pinworms (Nematoda: Oxyurida). Deep structure in molecular phylogenies
 revealed signals of host-associated divergence in both parasite species,
 while shallower phylogeographic structure varied between the two
 parasites. This suggests that although these parasites experienced similar
 landscapes and cyclic climate processes, temporally distinctive
 diversification events were associated with differences in the initiation
 of their association with host lineages. When climate cycles initiate
 diversification, partially congruent, but asynchronous host-associated
 parasite phylogenies may emerge.
description: Heteroxynema cucullatum
 DNA sequence alignments and phylogeniesH_cucullatum_3loci_concatenated_MrBayes.tre: MrBayes tree of Heteroxynema cucullatum concatenated loci COI, ITS+, 28S H_cucullatum_3loci_starbeast.tre: Starbeast species tree of Heteroxynema cucullatum loci COI, ITS+, 28S H_cucullatum_COI_quadrivittatus_hosts_MrBayes.tre: MrBayes gene tree of COI for Heteroxynema cucullatum individuals that corespond to quadrivittatus group hosts (used in tanglegram) H_cucullatum_COI_T_minimus_hosts_MrBayes.tre: MrBayes gene tree of COI for Heteroxynema cucullatum individuals that corespond to Tamias minimus hosts (used in tanglegram) Heteroxynema_cucullatum_28S_MrBayes.tre: MrBayes gene tree of Heteroxynema cucullatum 28S Heteroxynema_cucullatum_28S_alignment.nex: DNA sequence alignment of Heteroxynema cucullatum 28S Heteroxynema_cucullatum_COI_MrBayes.tre: MrBayes gene tree of Heteroxynema cucullatum COI Heteroxynema_cucullatum_COI_RAxML.tre: RAxML gene tree of Heteroxynema cucullatum COI Heteroxynema_cucullatum_COI_alignment.nex: DNA sequence alignment of Heteroxynema cucullatum COI Heteroxynema_cucullatum_ITS_MrBayes.tre: MrBayes gene tree of Heteroxynema cucullatum ITS+ Heteroxynema_cucullatum_ITS_alignment.nex: DNA sequence alignment of Heteroxynema cucullatum ITS+H_cucullatum_alignments_trees.tarRauschtineria eutamii DNA sequence alignments and phylogeniesR_eutamii_4loci_concatenated_MrBayes.tre: MrBayes tree of Rauschtineria eutamii concatenated loci COI, 12S, 18S, 28S R_eutamii_4loci_starbeast.tre: Starbeast species tree of Rauschtineria eutamii loci COI, 12S, 18S, 28S R_eutamii_COI_minimus_hosts_MrBayes.tre: MrBayes gene tree of COI for Rauschtineria eutamii individuals that corespond to Tamias minimus hosts (used in tanglegram) R_eutamii_COI_quadrivittatus_hosts_MrBayes.tre: MrBayes gene tree of COI for Rauschtineria eutamii individuals that corespond to quadrivittatus group hosts (used in tanglegram) Rauschtineria_eutamii_12S_MrBayes.tre: MrBayes gene tree of Rauschtineria eutamii 12S Rauschtineria_eutamii_12S_alignment.nex: DNA sequence alignment of Rauschtineria eutamii 12S Rauschtineria_eutamii_18S_MrBayes.tre: MrBayes gene tree of Rauschtineria eutamii 18S Rauschtineria_eutamii_18S_alignment.nex: DNA sequence alignment of Rauschtineria eutamii 18S Rauschtineria_eutamii_28S_MrBayes.tre: MrBayes gene tree of Rauschtineria eutamii 28S Rauschtineria_eutamii_28S_alignment.nex: DNA sequence alignment of Rauschtineria eutamii 28S Rauschtineria_eutamii_COI_MrBayes.tre: MrBayes gene tree of Rauschtineria eutamii COI Rauschtineria_eutamii_COI_RAxML.tre: RAxML gene tree of Rauschtineria eutamii COI Rauschtineria_eutamii_COI_alignment.nex: DNA sequence alignment of Rauschtineria eutamii COIR_eutamii_alignments_trees.tarTamias DNA sequence alignments and gene treesT_minimus_cytb_hosts_of_H_cucullatum_MrBayes.tre: MrBayes gene tree of cytochrome b for Tamias minimus individuals that correspond to Heteroxynema cucullatum individuals (used in tanglegram) T_minimus_cytb_hosts_of_H_cucullatum_alignment.nex: DNA sequence alignment of cytochrome b for Tamias minimus individuals that correspond to Heteroxynema cucullatum individuals T_minimus_cytb_hosts_of_R_eutamii_alignment.nex: DNA sequence alignment of cytochrome b for Tamias minimus individuals that correspond to Rauschtineria eutamii individuals T_minimus_cytb_hosts_of_R_eutamii_MrBayes.tre: MrBayes gene tree of cytochrome b for Tamias minimus individuals that correspond to Rauschtineria eutamii individuals (used in tanglegram) quadrivittatus_cytb_hosts_of_H_cucullatum_MrBayes.tre: MrBayes gene tree of cytochrome b for quadrivittatus group individuals that correspond to Heteroxynema cucullatum individuals (used in tanglegram) quadrivittatus_cytb_hosts_of_H_cucullatum_alignment.nex: DNA sequence alignment of cytochrome b for quadrivittatus group individuals that correspond to Heteroxynema cucullatum individuals quadrivittatus_cytb_hosts_of_R_eutamii_MrBayes.tre: MrBayes gene tree of cytochrome b for quadrivittatus group individuals that correspond to Rauschtineria eutamii individuals (used in tanglegram) quadrivittatus_cytb_hosts_of_R_eutamii_alignment.nex: DNA sequence alignment of cytochrome b for quadrivittatus group individuals that correspond to Rauschtineria eutamii individualsTamias_host_alignments_trees.tarPinworm & host BUCKy trees and pinworm COI BEAST treeH_cucullatum_COI_quadrivittatus_cytb_BUCKy.tre: BUCKy tree with concordance values for H. cucullatum COI MrBayes trees and quadrivittatus group cytb MrBayes trees H_cucullatum_R_eutamii_COI_BUCKy.tre: BUCKy tree with concordance values for H. cucullatum and R. eutamii COI MrBayes trees H_cucullatum_and_R_eutamii_COI_beast_rate_estimates_only.tre: BEAST tree of COI sequences for H. cucullatum and R. eutamii, used only to estimate relative rates H_cucullatum_COI_T_minimus_cytb_BUCKy.tre: BUCKy tree with concordance values for H. cucullatum COI MrBayes trees and T. minimus cytb MrBayes trees R_eutamii_COI_T_minimus_cytb_BUCKy.tre: BUCKy tree with concordance values for R. eutamii COI MrBayes trees and T. minimus cytb MrBayes trees R_eutamii_COI_quadrivittatus_cytb_BUCKy.tre: BUCKy tree with concordance values for R. eutamii COI MrBayes trees and quadrivittatus group cytb MrBayes treescomparative_trees.tar