cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24986436.v1
title: Fractal-HKB-Code-and-Data

description: all_hemoglobin_data.csv: This dataset captures hemoglobin activity levels during bimanual coordination tasks. All_Hand_Position_Data.csv: This dataset records kinematic positions of a rigid body representing the oscillating manipulandum's center for both hands. Description of the data and file structure all_hemoglobin_data.csv:ID: subject id | Phase: Initial starting coordination phase of trial | Noise: Metronome condition (inter-beat-intervals are structured to mimic different statistical noise types) | Epoch: ~8 second epochs. 0-baseline, 1-8 epochs are when subjects are performing coordination task (64 seconds), 9 epoch is rest period after movement | Time (s): Time in seconds of trial | Pre SMA (hbo): Oxygenated hemoglobin data in the anterior supplementary motor area (channels in ROI averaged together) | Pre SMA (hbr): De-oxygenated hemoglobin data in the anterior supplementary motor area (channels in ROI averaged together) | SMA Proper (hbo): Oxygenated hemoglobin data in the posterior supplementary motor area (channels in ROI averaged together) | SMA Proper (hbr): De-oxygenated hemoglobin data in the posterior supplementary motor area (channels in ROI averaged together) All_Hand_Position_Data.csvid: subject id | phase: Initial starting coordination phase of trial noise | Metronome condition: inter-beat-intervals of metronome that are structured to mimic different statistical noise types | epoch: ~8 second epochs. 1-8 epochs are when subjects are performing coordination task (64 seconds) | time: Time in seconds of trial | signal1: Rigid body of left-hand roll values (i.e., pitch, roll, yaw) during bimanual coordination task. Data is filtered using 4th order Butterworth filter with a 9.6 Hz cutoff frequency. | signal2: Rigid body of right-hand roll values (i.e., pitch, roll, yaw) during bimanual coordination task. Data is filtered using 4th order Butterworth filter with a 9.6 Hz cutoff frequency. | crp: Continuous relative phase of both signalsCode/Software hemoglobin_graphs_and_analyses.R: An R script designed to generate graphs and conduct analyses based on the hemoglobin values. kinematic_data_graphs_and_analyses.R: An R script designed to generate graphs and conduct analyses on continuous relative phase values derived from hand positions. It also generates the graph that contains both experimental and simulated data.
DOI: 10.6084/m9.figshare.25251163.v5
title: PredGCN

description: PredGCN
DOI: 10.6084/m9.figshare.26952436.v1
title: Conservation genetics of Mahogany Gliders and their complex evolutionary relationship with Squirrel Gliders

description: These are the datasets and analysis scripts for the publication "Conservation genetics of Mahogany Gliders and their complex evolutionary relationship with Squirrel Gliders" submitted to Conservation Genetics 2024.<br>glider_pAll.csv - DArT processed data combined with field data for downstream filtering and analyses.snp_filters - customized filtering steps for the glider genetics. Output different data formats and filtered status for downstream analyses.structure - Analyses of genetic structure.diversity_mgsq - Analyses of genetic diversity focused on the Mahogany and Squirrel Glider datasets.<br>
DOI: 10.6084/m9.figshare.26954515.v1
title: Schadenfreude and Sympathy Dataset

description: Data with coding.
DOI: 10.6084/m9.figshare.7528748.v1
title: Data from the study: Diversification and functional evolution of reef fish feeding guilds

description: Dataset for the paper "Diversification and functional evolution of reef fish feeding guilds". <br>This dataset includes: 1) an Excel file (Table S1) containing the functional data for 156 wrasses (Labridae) and 200 damselfishes (Pomacentridae) ; 2) a pdf file gathering all Supplementary Information (Tables S2-S5; Figures S1 & S2).<br>Concerning the Table S1, data are provided on Sheet 1 of the Excel File. Sheet 2 gives a precise description for all traits. Sheet 3 lists the references where all data were gathered.
DOI: 10.6084/m9.figshare.12674375.v1
title: Integrative effects of increasing aridity and biotic cover on soil attributes and functioning in coastal dune ecosystems

description: These databases and metadata correspond to a field experiment performed in 2016 in the Atlantic coastline of the Iberian Peninsula. The experimental design followed a standardized sampling protocol. We collected data of vegetation and soil samples. We determined soil properties, potential soil functions, soil microbial abundance and diversity.
DOI: 10.6084/m9.figshare.19189769.v3
title: optical properties

description: for data availability
DOI: 10.6084/m9.figshare.24309619.v1
title: Dataset

description: Dataset
DOI: 10.6084/m9.figshare.27209472.v1
title: Output and source data for: Detection of gut-derived Enterobacterales within the oropharynx is associated with increased susceptibility to respiratory tract infection in long-term aged care residents

description: Output and source data for: Detection of gut-derived Enterobacterales within the oropharynx is associated with increased susceptibility to respiratory tract infection in long-term aged care residentsSophie J. Miller*, Frank Zhang*, Steven L. Taylor, Andrew P. Shoubridge, Egi Vasil Richard J. Woodman, Lito E. Papanicolas, Geraint B. Rogers, and the GRACE Investigator Group*Contributed equally
DOI: 10.17632/cvymd796yb
title: EnergyPLAN model of the Hungarian electricity system

description: EnergyPLAN model of the electricity system of Hungary. Includes the Data files and Distribution files necessary to view the model in the EnergyPLAN tool (https://www.energyplan.eu/).
DOI: 10.17632/tkv47zvhdw
title: Base Load_PV_Wind Power Production

description: This excel file includes three sheets. The first sheet contains the consumption power of the uncontrollable load of one-day energy planning of a residential end-user. The second sheet contains the local photovoltaic power generation of a residential building. The third sheet contains the local wind power generation of a residential building.
DOI: 10.6084/m9.figshare.11858514.v1
title: SNP data of 827 ewes

description: This is a SNP chip set of 827 ewes including 312 Small-tailed Han, 188 Qira black and 327 Sunite sheep. These data is linked to one paper on Animal Genetics [1]. If you want to reuse it, please inform us (mxchu@263.net).<br>[1] Lin Tao, et al. Combined approaches identify known and novel genes associated with sheep litter size and non-seasonal breeding. <b>https://doi.org/10.1111/age.13138</b> <br><br>
DOI: 10.6084/m9.figshare.12667962.v1
title: Additional file 2 of Genome-wide characterization of copy number variations in the host genome in genetic resistance to Marek’s disease using next generation sequencing

description: Additional file 2: Table S2. Summary statistics of raw and screened CNVs.
DOI: 10.6084/m9.figshare.21976070.v1
title: Supplementary Material for: Pathological complete response of metastatic clear cell renal carcinoma with pembrolizumab and axitinib: a case report and review of literature.

description: The role of cytoreductive nephrectomy has become unclear since the introduction of immunotherapy which is now the backbone of the treatment for metastatic renal cell carcinoma. Different combinations are used based on the prognosis. Achieving a complete response would be ideal and includes radiographic disappearance of lesions. However, there have been a few reported cases of pathological complete response with persistent radiographic evidence of cancer. The authors report a case of pathological complete response despite persistent radiographic evidence of residual disease in a patient with metastatic renal cell carcinoma treated with Pembrolizumab and Axitinib. The patient subsequently underwent cytoreductive nephrectomy after the 13th dose of Pembrolizumab. The resected mass consisted of scar tissue with no viable tumor cells seen on pathology. only scar tissue. This case reveals that persistent radiographic evidence of the tumor may be explained by scar tissue, challenging the role of cytoreductive nephrectomy in the era of immunotherapy.
DOI: 10.6084/m9.figshare.29078222.v1
title: AMOVA and pairwise alignment Input files

description: These files in format (.arp) were used to run an AMOVA analysis in Arlequin 3.5. These files have been modified from existing files from Kamath et al. 2016 to include New Mexico sequences and other Rana catesbeiana cyt b sequences on Genbank. AMOVA compared each region of invasive and native populations to New Mexico populations.(.arp) files are directly input to Arlequin software. Files contain haplotypes and sample sizes for each region in order.(.hap) files are contained in same folder and include sequences and associated haplotype.Settings in Arlequin: <br>AMOVA: Locus by Locus AMOVA, 10,000 permutations, compute distance matrix by pairwise differencesPopulation comparisons: Compute pairwise FST, 10,000 permutations, significance level 0.05, compute distance matrix by pairwise differences
DOI: 10.6084/m9.figshare.988376_d255
title: Participant 12 in the WAY-EEG-GAL dataset.  328 grasp-and-lift trials with different weights and surfaces during which EEG, EMG, kinematics, and kinetics were recorded.

description: WAY-EEG-GAL is a dataset designed to allow critical tests of techniques to decode sensation, intention, and action from scalp EEG recordings in humans who perform a grasp-and-lift task. Twelve participants performed lifting series in which the object’s weight (165, 330, or 660g), surface friction (sandpaper, suede, or silk surface), or both, were changed unpredictably between trials, thus enforcing changes in fingertip force coordination. In each of a total of 3,936 trials, the participant was cued to reach for the object, grasp it with the thumb and index finger, lift it and hold it for a couple of seconds, put it back on the support surface, release it, and, lastly, to return the hand to a designated rest position. We recorded EEG (32 channels), EMG (five arm and hand muscles), the 3D position of both the hand and object, and force/torque at both contact plates.
DOI: 10.17632/3tprt2ct2n
title: Data for Modeling Large-scale Coal-Fired CHP Plant in Kazakhstan: Two Cases

description: This data article provides information on input data to represent the operational processes of two combined heat and power plants (CHPP) in Kazakhstan. The presented data in this article are related to the research article “Efficient planning of energy production and maintenance of large-scale combined heat and power plants” (G. Kopanos et al. 2018). This set of data is helpful in modelling two different cases of the Industrial coal-fired power plants installed in the Soviet Union period during 1970-1990 years.
DOI: 10.6084/m9.figshare.16832602.v1
title: Morphometric Data

description: Geometric morphometric data used to analyze shape. <br>Tiff images derived from image stacks resulting from micro-CT scanning of museum specimens of porcupine (Erethizontidae) mandibles. Images are the basis for landmark and semilandmark geometric morphometric quantification of shape.<br>TPS and NTS files created from tiff images using the TPS suite of programs. For more details please see materials and methods section of associated publication.<br>csv file contains metadata associated with each specimen as well as univariate measurements (linear measurements, angles, and categorical traits).
DOI: 10.6084/m9.figshare.18051824.v2
title: Supporting data for "The genus Serratia revisited by genomics"

description: Genome assemblies alongside raw and processed data used to generate figures in "The genus <em>Serratia </em>revisited by genomics<em>". </em>Corresponding analysis and figure generation scripts can be found at https://github.com/djw533/Serratia_genus_paper. To run figure generation scripts, figshare_data.tar.gz should be uncompressed into the base directory of the github repository.
DOI: 10.6084/m9.figshare.5121298.v1
title: Supplementary Material for: Evaluation of Health-Related Quality of Life in Patients with Prostate Cancer after Treatment with Radical Retropubic Prostatectomy and Permanent Prostate Brachytherapy

description: <i>Aim:</i> The aims of this study were to evaluate the health-related quality of life (HRQOL) and make the treatment decision less difficult. <i>Methods:</i> Between 2007 and 2009 radical retropubic prostatectomy (RRP) was performed in 96 patients and permanent prostate brachytherapy (PPB) in 88 patients at our hospital. The general and disease-specific HRQOL was measured using two instruments, the Medical Outcome Study 8-Item Short-Form Health Survey (SF-8) and the expanded prostate index composite (EPIC). <i>Results:</i> Comparing RRP and PPB, there were significant differences in all scores except for general health in the 1st month after treatment which had the same score in both groups. The baseline quality of life scores in physical function (p &lt; 0.05), physical role (p &lt; 0.01), social functioning (p &lt; 0.01), emotional role (p &lt; 0.01) and mental health (p &lt; 0.01) showed significant differences between the group and were better in the PPB group than in the RRP group. The physical component summary score in the PPB group was better than in the RRP group in the 1st month (p &lt; 0.01) but recovered up to 3 months in the RRP group. The urinary bother and irritative/obstructive scores in the 1st month were worse from baseline in both groups (p &lt; 0.05) and remained significantly worse up to 6 months in the PPB group than in the RRP group where these scores recovered within3 months. The urinary incontinence score in the RRP group was still worse than in the PPB group up to 12 months (p &lt; 0.01). Bowel function and bother were significantly better in the RRP group at 3 (p &lt; 0.05) and 6 months (p &lt; 0.01) than in the PPB group where bowel function at 12 months was worse than at baseline and in the RRP group. Sexual function (p &lt; 0.01) and sexual bother were better in the PPB group and did not change until 12 months. <i>Conclusion:</i> The difference in disease-specific quality of life has become clearer using EPIC. As with other published studies, our results provide important information that will therefore be useful for selecting the optimal treatments for localized prostate cancer.
DOI: 10.17632/8r5ybpjrbb
title: An algorithm of calculating transport parameters of thermoelectric materials using single band model with optimized integration methods

description: We develop an algorithm called SPBcal under Java SE runtime environment 1.8.0_131 to calculate transport parameters of thermoelectric materials within the framework of single parabolic band (SPB) model. For calculating Fermi-Dirac integrals, SPBcal is implemented by a double exponential transformation combined with trapezoidal rule to calculate F_1(n) and F_2(n) and the trapezoidal rule with pole correction to calculate F_{-1/2}(n) and F_{1/2}(n), with which good accuracy of the transport parameters as a function of temperature can be obtained with very low execution time of the algorithm as long as the experimentally determined Seebeck coefficients are given. The SPBcal is tested and the results are consistent with the data reported in the literature.
DOI: 10.17632/crxvvwbyrr
title: Dataset for "In-situ Geotechnical Properties of Abyssal Sediments and Implications for Polymetallic Nodule Mining"

description: Dataset for the manuscript entitled “In-situ Geotechnical Properties of Abyssal Sediments and Implications for Polymetallic Nodule Mining” by Zhenggang Li, Zhou Li, James R Hein, Yangrui Cheng, Yuwei Liu, Shiquan Lin, Xuan Zeng, Xiaoyan Li, Xibin Han, Hao Wang, Fengyou Chu, Xiaohu Li for submission in Geophysical Research letters. This dataset contains the raw data of 35 in-situ sediment penetration strength
obtained at 35 sites from 11 stations on the abyssal plain of China Minmetals Contract Area in the Clarion-Clipperton nodule field. In addition, it also contains raw data of sediment grain size collected at the stations where in-situ geotechnical tests have been conducted.
DOI: 10.17632/dx7sds7ms8
title: Data for: The Online Integrated Order Picking and Delivery Considering Pickers’ Learning Effects for An O2O Community Supermarket

description: Research data includes orders’ arrival time and item information in 60 days. The format of data file is mat, generated by Matlab.
DOI: 10.17632/zs82gfkkr9
title: Acoustic and deep features extracted from acoustic emission signals for the characterization of biocomposites and glass fiber epoxy composites

description: INTRODUCTION
The dataset contains 12 Excel files with extracted features for the characterization of loaded materials and classification of the source material as biocomposite and glass fiber epoxy composite. Each file contains features for 22323 samples, extracted from acoustic emission measurements on loaded composites. The dataset was collected to examine various configurations of convolutional autoencoders for deep feature extraction, and different machine learning methods for the classification of the source material.

INPUTS
The inputs of this dataset are composed of two types of extracted features: 
1.	Standard features
2.	Deep features 

Standard features are extracted from acoustic emission signals as follows:
c1:	Peak amplitude [nm] – burst signal linear peak amplitude,
c2:	Burst signal rise-time [µs] – elapsed time after the first threshold crossing and until the burst signal maximum amplitude,
c3:	Burst signal duration [µs] – elapsed time after the first and until the last threshold crossing of a burst signal,
c4:	Burst signal energy [au],
c5:	RMS Background noise [µV],
c6:	Counts – Number of positive threshold crossings [/],
c7:	Spectral centroid [Hz],
c8:	Frequency of the max. amplitude of Fourier transform spectrum [Hz],
c9:	Frequency of the max. amplitude of continuous wavelet transformation (using the complex Morlet wavelet) [Hz],
c10:	Partial power of Fourier spectrum between 0 and 75 kHz [/], 
c11:	Partial power of Fourier spectrum between 75 and 150 kHz [/],
c12:	Partial power of Fourier spectrum between 150 and 300 kHz [/],
c13:	Partial power of Fourier spectrum between 300 and 475 kHz [/].

Deep features are extracted by using the convolutional autoencoders (CAE) as described in the accompanying paper. 
Deep features are extracted automatically in an unsupervised manner and therefore don’t have physical meaning but are designed to minimize information loss of the input-output mapping of the CAE. Deep features are denoted as: d1, d2, d3, etc.

OUTPUT
The outputs in this dataset are collected in the last column of each file and denote the class (labels_bio-0_cfe-1) as:
Class = 0:  biocomposite
Class = 1:  fiber epoxy composite

FILE NAME DESCRIPTION
File names are composed of CAE1 or CA2 prefixes denoting two types of used CAEs, and the remaining part of the file name defines the CAE hyperparameters as “s1-s2-s3-s4-s5-s6-s7”, which stand for:
s1:	Number of kernels used in 1st convolutional layers,
s2:	Number of kernels used in 2nd convolutional, and 1st transposed convolutional layers,
s3:	Number of kernels used in convolutional and transposed convolutional layers of the latent section,
s4:	Number of neurons in 2nd and 4th FC layer,
s5:	Number of neurons in the bottleneck (3rd FC) layer. This number also represents the number of extracted deep features per input image.
s6:	Number of training epochs,
s7:	The batch size of training samples.
DOI: 10.25452/figshare.plus.26540593.v1
title: Dataset supporting "Nuclear instance segmentation and tracking for preimplantation mouse embryos"

description: For investigations into fate specification and morphogenesis in time-lapse images of preimplantation embryos, automated 3D instance segmentation of nuclei is invaluable. Supervised machine learning approaches can radically improve segmentation accuracy, but they often require large amounts of annotated 3D data. Using selective plane illumination microscopy (SPIM) we acquired 3D live images of H2B-miRFP720-expressing preimplantation embryos at various developmental stages and created a new ground-truth dataset with full 3D nuclear instance segmentation. This dataset, which we call BlastoSPIM (concatenation of blastocyst and SPIM), is one of the largest and most complete of its kind and can be used for benchmarking different segmentation methods. BlastoSPIM is split into two parts: 1.0, mostly containing images of early embryos, and 2.0, containing images of late blastocysts. The BlastoSPIM 1.0 dataset includes 573 fully annotated 3D images of nuclei in mouse embryos; across all images, there are 11708 individual nuclear instances annotated and 116 annotated polar bodies. The BlastoSPIM 2.0 dataset consists of 80 annotated images of late-stage embryos with a total of 6628 nuclear instances. The quality, detail, and size of the BlastoSPIM dataset makes it unique relative to other publicly available ground truth datasets for nuclear instance segmentation. See blastospim.flatironinstitute.org for more details and models trained on this dataset.
<strong>Funding</strong>: Research reported in this publication was supported by the National Institutes of Health under award numbers R01HD110577 (E.P.) and R01HD107026 (E.P.) and the National Center for Advancing Translational Sciences (NCATS), a component of the National Institutes of Health (NIH) under award number TL1TR003019 (fellowship, R.P.K.-Y.). The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. The computations in this work were performed at facilities supported by the Scientific Computing Core at the Flatiron Institute, a division of the Simons Foundation.
DOI: 10.6084/m9.figshare.22220872.v2
title: Locations of Xylella fastidiosa infections in Apulia (Italy)

description: The dataset used is composed of 15,362 orchard trees that tested positive for Xylella fastidiosa infection, which were surveyed in Apulia in 2015-2022 following the official protocols from EU Reg. 2020/1201 and from the European Food Safety Authority (EFSA, 2015). Each record has been characterized in terms of species infected, the geographic coordinates of the infection location and the year of detection. The data have been manually digitalized from the official documents downloaded from the Xylella emergency official site of the Apulia Region (http://www.emergenzaxylella.it/portal/portale_gestione_agricoltura).
DOI: 10.6084/m9.figshare.23565954.v1
title: gwhd2021jpg.zip

description: Global Wheat Head Dataset 2021 (jpg compressed) The jpg compressed version of Global Wheat Head Dataset 2021. Converting all the images from png to jpg resulted in compression of abt. 10Gb to 1Gb. File name in the csv annotation file were also converted. Conversion script is included in this zip file (png2jpg.py). This should aid the download waiting time to a certain extent, however I do not assure any data loss upon image compression. I do not claim any rights regarding this dataset. https://zenodo.org/record/5092309
DOI: 10.6084/m9.figshare.25897702.v1
title: BAM files and outputs from NAGATA, StringTie2, Bambu, and Isoquant, Figure 5, NAGATA

description: BAM files and associated inputs used to generate data shown in Figure 5 of NAGATA manuscript. Outputs from NAGATA, StringTie2, Isoquant, and Bambu are also included
DOI: 10.6084/m9.figshare.6490451.v1
title: Student Project Allocation Dataset

description: Dataset for paper to appear in <br>Kenekayoro P (In Press). Population Based Techniques for Solving the Student Project Allocation Problem. International Journal of Applied Metaheuristic Computing (IJAMC)<br>Contains data where students listed their preferred subject areas in other of preference. Dataset also contains subject areas with and academic supervisor to supervise in that project area.<br>Goal is to create a student project allocation problem where students are allocated their preferred projects whilst ensuring that supervisors supervise equal number of students and average grade point average of students assigned to each supervisor is the same