cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.776926.v1
title: Genotyping and phenotyping (tillering index) data from teosinte

description: Genotyping and and phenotyping (tillering index) data from 'Natural variation in teosinte at the domestication locus <em>teosinte branched1</em> (<em>tb1</em>)
DOI: 10.6084/m9.figshare.15046797.v2
title: Code and Data for Prediction of SARS-Cov-2-positivity from million-scale complete blood counts using machine learning

description: Sample data and code for easy reproducibility of results described in the paper<em> Prediction of SARS-CoV-2-positivity from million-scale complete blood counts using machine learning.</em> <br> Please see the paper for the full author list and more details.<br>
DOI: 10.6084/m9.figshare.25564284.v1
title: Submission manuscript for PNAS

description: This data is used for submissions to the journal Proceedings of the National Academy of Sciences of the United States of America
DOI: 10.7274/24744633.v1
title: Beach Erosion during Hurricane Maria in PuertoRico

description: This dataset accompanies the Manuscript 'Impact of Hurricane Maria on beach erosion in Puerto Rico: remote sensing and causal inference' by Jaynise Perez-Valentin and Marc F. Muller, November 2019. beachesGIS is a zip archive that contains GIS vectors of 75 beach polygons across Puerto Rico. The vectors are provided in ESRI Shapefile format and LatLong coordinate system and have an attribute table with a beach name. TimeSeries is a csv table containing time series of shoreline position associated with each of the 75 beaches, identified by their name. Each row is an observation, columns are: - 'Name' the name of the beach, as referred to in the beachesGIS file and in the manuscript. - 'date' in yyyy-mm-dd format - 'postMaria' takes a value of 1 if the observation was taken after the Hurricane (2017-09-20), zero otherwise - 'Lat', 'Lon' the coordinates of the centroid of the beach - 'A' and 'P' the area and perimeter of the beach polygon in meters - 'w' and 'L' the estimated length and width of the beach polygon in meters. - 'sandRatio' The ratio of the beach polygon occupied by the shore (i.e sand), as measured using Sentinel 1 GRD SAR imagery - 'distance' the distance from pre-Maria shoreline position, in meters, away from the shore (i.e. positive if the beach accretes) and spatially averaged over the polygon.
DOI: 10.6084/m9.figshare.22584742.v2
title: A water quality dataset in China

description: This dataset included water quality data for daily, weekly, and monthly in the time period of 1980-2022, with 17 indicators for over 330,000 observations at 2384 sites from inland to coastal/ocean areas in China.
DOI: 10.6084/m9.figshare.26272864.v2
title: PureBeta

description: We present PureBeta, a statistical framework that uses genome-wide DNA methylation data as the only input to first estimate tumor purity of samples and then adjust DNA methylation values of individual CpGs with respect to tumor purity to better reflect somatic changes in tumor cells and improve biological inference. Any updates to the R package can be found on https://github.com/StaafLab/PureBeta. Here we have added a copy of the R package (v1.1.0) and reference data for calculating tumor purity and adjusting Illumina 450K DNA methylation beta values of breast or lung cancer (adenocarcinoma and squamous cell carcinoma).
DOI: 10.6084/m9.figshare.22219573.v3
title: CSEC+ Framework Assessment Dataset: Expert Evaluations of Cybersecurity Skills for Job Profiles in Europe (data package)

description: Data for <em>"</em><em>Consolidating cybersecurity in Europe: A case study on job profiles assessment</em><em>"</em> by C. E. Budde, A. Karinsalo, S. Vidor, J. Salonen, and F. Massacci (COSE 2023). <br> This data package contains the processing tools, raw data points, and resulting processed data used in DOI: 10.1016/j.cose.2022.103082 <br> A description of all data files here included, and their relation to the tables and figures of the publication (and the research process followed), can be found in "README.csv".
DOI: 10.6084/m9.figshare.3529676.v1
title: Appendix A. Derivation of the Cws index of clustering.

description: Derivation of the Cws index of clustering.
DOI: 10.6084/m9.figshare.3568401.v1
title: Appendix I. Hill numbers and Hurlbert’s indices.

description: Hill numbers and Hurlbert’s indices.
DOI: 10.6084/m9.figshare.20331410.v2
title: miR-181a-5p can inhibit the proliferation and promote the differentiation of chicken primary myoblasts

description: 1. Myoblast proliferation and differentiation is one of the most important biological processes in the development of skeletal muscle. MicroRNAs (miRNAs) play a crucial role in this process. 2. In this study, the expression level of miR-181a-5p was detected, which found that miR-181a-5p was expressed differently in different tissues, different embryonic ages, and different differentiation stages of primary myoblasts in Gushi chickens. 3. The effect of miR-181a-5p was further investigated on chicken primary myoblasts (CPMs). The results of cell counting kit-8 (CCK-8), 5-ethynyl-2’-deoxyuridine (EdU) and cell cycle showed that miR-181a-5p could inhibit the proliferation of CPM. The miR-181a-5p promoted the expression of <i>MYOD, MYOG</i>, and <i>MYHC</i>. MYHC protein immunofluorescence experiments showed that miR-181a-5p increased the area of myotubes. 4. In total, 63 potential target genes of miR-181a-5p in <i>mRNA</i> transcriptome data analysis were identified. Functional enrichment analysis was performed on these target genes, and <i>ASNS, SMYD1</i>, and <i>FOS</i> were found to play regulatory roles in biological processes such as muscle development. It was speculated that miR-181a-5p played a role in myoblast development through these genes. 5. In conclusion, miR-181a-5p can inhibit the proliferation of chicken myoblasts and promote the differentiation of chicken myoblasts. This study laid the foundation for further research on the regulatory mechanism of miR-181a-5p in the development of skeletal muscle and the formation of excellent meat quality traits in Gushi chicken.
DOI: 10.6084/m9.figshare.25057427.v2
title: SNPs and MrBayes consensus tree for: SNPS data from: <b>P</b><b>opulation genomics and genetic diversity of the invasive chrysanthemum lace bug (</b><b><i>Corythucha marmorata</i></b><b>) across its invasive range in Japan</b><b>P</b><b>opulation genomics and genetic diversity of the invasive chrysanthemum lace bug (</b><b><i>Corythucha marmorata</i></b><b>) across its invasive range in Japan</b><b>P</b><b>opulation genomics and genetic diversity of the invasive chrysanthemum lace bug (</b><b><i>Corythucha marmorata</i></b><b>) across its invasive range in Japan</b>

description: SNPS data from: <b>P</b><b>opulation genomics and genetic diversity of the invasive chrysanthemum lace bug (</b><b><i>Corythucha marmorata</i></b><b>) across its invasive range in Japan</b>
DOI: 10.6084/m9.figshare.28104635.v2
title: Dataset and List of Questionnaires for Digital Literacy and Entrepreneurial Behavior

description: The dataset and list of questionnaires for digital literacy and entrepreneurial behavior towards tourism workers Bali
DOI: 10.6084/m9.figshare.154863.v1
title: Plant-Pollinator Network Data

description: Datasets describe the frequency of visits observed for each pollinator-plant interaction. More info in Bartomeus et al 2008 Oecologia 155 : 761-770. The study involved pollinator surveys in 3 sites per study species. Pairs of invaded and uninvaded plots were samples in all sites. Sites were sampled every 2 weeks during the entire flowering period of both C. affine acinaciformis and O. stricta. Each plant species was sampled during 6 minutes. Each species was sampled for a total of 36 minutes per site. In total, each site was surveyed by pollinators for more than 6 hours. Plant traits are described in Bartomeus 2013 PLoSOne (see link below)
DOI: 10.6084/m9.figshare.12721817.v1
title: Data.xlsx

description: <b>Perceptions on the informativeness of credit risk reporting rules in the EU</b>
DOI: 10.6084/m9.figshare.15042684.v1
title: Supplementary Material for: The Prevalence and Genetic Characterization of Human Metapneumovirus in Bulgaria, 2016–2019

description: <b><i>Introduction:</i></b> We investigated the prevalence of human metapneumovirus (hMPV) among patients with acute respiratory infections in Bulgaria, and performed genetic characterization of the F gene of these strains. <b><i>Methods:</i></b> Nasopharyngeal swabs collected from patients of a range of ages were tested by using real-time PCR for 12 respiratory viruses. The F gene was sequenced, and phylogenetic and amino acid analyses of the F gene/protein were performed. <b><i>Results:</i></b> A total of 1,842 patients were examined during a 3-year period; 1,229 patients (66.7%) were positive for at least one respiratory virus. hMPV was identified in 83 (4.5%) patient samples. Eleven (13%) of hMPV-positive patients were coinfected with another respiratory virus. The hMPV incidence rate in the 2016/2017, 2017/2018, and 2018/2019 winter seasons was 5.4, 5.4, and 3.1%, respectively. hMPV was mainly detected in specimens collected between January and May (89.2% of cases). The incidence of hMPV infection was highest (5.1%) among the youngest age-group (0–4 years), where hMPV was a causative agent in 8.1 and 4.8% of bronchiolitis and pneumonia cases, respectively. Among the patients aged ≥5 years, hMPV was detected in 2.2 and 3.2% of cases of pneumonia and central nervous system infections, respectively. Phylogenetic analysis of the F gene showed that the sequenced hMPV strains belonged to the A2b, B1, and B2 genotypes. Numerous amino acid substitutions were identified compared with the NL00/1 prototype strain. <b><i>Conclusion:</i></b> This study revealed the significant role of hMPV as a causative agent of serious respiratory illnesses in early childhood, and also demonstrated year-to-year changes in hMPV prevalence and genetic diversity in circulating strains.
DOI: 10.6084/m9.figshare.20364654.v3
title: ResearchData

description: Three different NURBS curves were used as the tool paths for the simulations and experiments
DOI: 10.6084/m9.figshare.5454997.v1
title: Biochemical markers - Influence of platinum harmonized textile on neuromuscular, systemic and subjective recovery.xlsx

description: Biochemical marker creatinkinase
DOI: 10.6084/m9.figshare.25116563.v1
title: Male consort behavior is driven by female mate choice and receptive synchrony in Tibetan macaques (<i>Macaca thibetana</i>)

description: In group-living animals, males’ fighting abilities were usually mediated via dominance rank to sort males into a queue to access fertile females, especially in non-human primates. However, the correlation between male reproductive success and consortship, an alternative high-ranking male reproductive strategy, varies across species, obscuring the adaptive significance of male consort behavior. The priority of access (PoA) model is commonly used to predict male mating/reproductive success based on male dominance rank and female reproductive synchrony. In this study, we aimed to assess the applicability of the PoA model in predicting the distribution of male mating success and consortship, while also identifying the main factors influencing these outcomes in a group of free-ranging Tibetan macaques (<i>Macaca thibetana</i>) at Huangshan, China. Our results showed that (1) the male mating was significantly skewed towards the highest-ranking males, deviating from the expectations set by the PoA model. This departure was attributed to both female mate choice and male consort behavior. Notably, the influence of male rank on mating success was decreased as the number of receptive females increased. Additionally, female mate choice became less significant when consorted by males compared to situations when they were not consorted; (2) the observed consort behavior among males was lower than what the PoA model predicted for available receptive days. High-ranking males exhibited a gradual increase in their consort behavior with the rising number of receptive females. Our results suggests that, in Tibetan macaques, male consort behavior imposes limitations on female choice, mitigating the impact of male dominance rank on male mating success as the number of receptive females grows. We proposed that male consort behavior could be driven by female counter-monopoly strategies, and the simultaneous occurrence of consort behavior and opportunistic mating may represent the most effective mating tactic in this promiscuous mating system.
DOI: 10.6084/m9.figshare.19802632.v4
title: SADD synthetic cost-effectiveness dataset

description: Synthetic version of cost and effectiveness data from the SADD randomised clinical trial. Contains utility and health-care costs for 219 participants measured at baseline, 3 months and 9 months. This is a fictional (simulated) dataset with similar features and data distribution than the original dataset. Dataset in CSV and Stata (.dta) format.
DOI: 10.6084/m9.figshare.22360054.v1
title: Supplementary Material for: Supervised, Self-Administered Tablet-Based Cognitive Assessment in Neurodegenerative Disorders and Stroke

description: <b><i>Introduction:</i></b> As the population ages, the prevalence of cognitive impairment is expanding. Given the recent pandemic, there is a need for remote testing modalities to assess cognitive deficits in individuals with neurological disorders. Self-administered, remote, tablet-based cognitive assessments would be clinically valuable if they can detect and classify cognitive deficits as effectively as traditional in-person neuropsychological testing. <b><i>Methods:</i></b> We tested whether the Miro application, a tablet-based neurocognitive platform, measured the same cognitive domains as traditional pencil-and-paper neuropsychological tests. Seventy-nine patients were recruited and then randomized to either undergo pencil-and-paper or tablet testing first. Twenty-nine age-matched healthy controls completed the tablet-based assessments. We identified Pearson correlations between Miro tablet-based modules and corresponding neuropsychological tests in patients and compared scores of patients with neurological disorders with those of healthy controls using <i>t</i> tests. <b><i>Results:</i></b> Statistically significant Pearson correlations between the neuropsychological tests and their tablet equivalents were found for all domains with moderate (<i>r</i> &gt; 0.3) or strong (<i>r</i> &gt; 0.7) correlations in 16 of 17 tests (<i>p</i> &lt; 0.05). All tablet-based subtests differentiated healthy controls from neurologically impaired patients by <i>t</i> tests except for the spatial span forward and finger tapping modules. Participants reported enjoyment of the tablet-based testing, denied that it provoked anxiety, and noted no preference between modalities. <b><i>Conclusions:</i></b> This tablet-based application was found to be widely acceptable to participants. This study supports the validity of these tablet-based assessments in the differentiation of healthy controls from patients with neurocognitive deficits in a variety of cognitive domains and across multiple neurological disease etiologies.
DOI: 10.15468/dl.ve4xrc
title: Occurrence Download

description: A dataset containing 880 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Notocelia uddmanniana (Linnaeus, 1758)"
 ]
}

 The dataset includes 880 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009467-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26662531.v1
title: <b>Supplementary Material – </b><b>Orchidaceae in Iguaçu National Park, Paraná, Brazil</b>

description: <b>Table S1 – </b><b>List of Orchidaceae species collected in Iguaçu Nacional Park, PR, Brazil.</b>
DOI: 10.15468/dl.mjhrkb
title: Occurrence Download

description: A dataset containing 157976 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Observations Regelink Ecology and Landscape"
 ]
}

 The dataset includes 157976 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009464-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17866/rd.salford.7857743.v1
title: harvard.txt

description: Text file containing the relevant reference / weblink and overview of the HARVARD speech corpus lists and sentences.<br>
DOI: 10.6084/m9.figshare.28682144.v2
title: Source Data.xlsx

description: The growth of lithium (Li) dendrites and the accumulation of dead Li (i.e., Li metal regions which are electronically disconnected from the current collector) significantly undermine the safety and performance of Li metal batteries. This study employs kilogram–scale atomic layer deposition technology to construct zinc oxide with a preferential (002) crystal orientation, which homogeneously forms on commercial carbon nanotube papers. Our approach emphasizes the importance of achieving a moderate Li adsorption energy and low Li migration energy barriers to suppress Li dendrite growth. In this work, we introduce the concept of "catalytic" effect for dead Li reconversion, as validated through time–of–flight secondary ion mass spectrometry, leading to a Li plating/stripping efficiency of 99.89%. The Ah–level Li metal pouch cells with high–nickel positive electrodes achieve a specific energy of 380 Wh kg<sup>-1</sup> (based on the mass of the whole pouch cell) and demonstrate stable cycling under demanding conditions. Analysis of the cycled pouch cells confirms the structural integrity and provides insights into the mechanism of the dead Li "catalytic" conversion.
DOI: 10.6084/m9.figshare.12998762.v1
title: Rating on hospital websites.xlsx

description: This dataset comprises the ratings given by a sample of 102 respondents on five different websites owned by the private hospitals located in Sabah, Malaysia. The respondents rated the websites based on four attributes, namely navigability, layout design, ease of use, and content. The hospitals have been renamed as Hospital A, B, C, D, and E for the reason of maintaining confidentiality.
DOI: 10.6084/m9.figshare.19285472.v1
title: Cow genotypes

description: SNP genotype data from bovine HD and F250 chip genotyping is provided as binary files created using PLINK.<br>
DOI: 10.6084/m9.figshare.25003208.v1
title: Supplementary Material for: Chinese Multidisciplinary Expert Consensus on Immune Checkpoint Inhibitor (ICI)-Based Combination Therapy for Hepatocellular Carcinoma (2023 Edition)

description: Immune checkpoint inhibitor (ICI)-based combination therapy modalities for hepatocellular carcinoma (HCC) have achieved significant efficacy in clinical research and practice and have become the mainstay for the treatment of unresectable HCC. To better help clinicians use combination immunotherapy drugs and regimens rationally, effectively, and safely, the editorial board facilitated a discussion with multidisciplinary experts in the field, adopted the "Delphi" consensus formation method, and finally revised and completed the "Chinese Multidisciplinary Expert Consensus on the Immune Checkpoint Inhibitors (ICIs)-Based Combination Therapy for Hepatocellular Carcinoma (2023 Edition)" on the basis of the 2021 edition. This consensus primarily focuses on the principles and methods of clinical practice of combination therapy based on ICIs, aiming to summarize the recommendations for clinical application based on the latest research and expert experience and provide application guidance for clinicians.
DOI: 10.6084/m9.figshare.27717489.v1
title: Supplementary Material for: Behind Bars: Exploring Health and Geriatric Conditions Among Incarcerated Older People in Mexican prisons.

description: Introduction
The aging process of the incarcerated population is a growing concern, yet there are few data on older adults in this demographic group. Hence, this study seeks to examine the health status of older adults who are incarcerated in Mexican prisons and its association with the duration of their imprisonment.

Methods
This is a secondary analysis of the 2021 Mexico National Prisons Survey. We analyzed 50-year-old and older prisoners, and performed a descriptive analysis of the sample’s age, sex, sociodemographic variables, and chronic conditions. Multivariate analysis stratified by age was performed to assess the effect of the time spent in prison on older prisoners’ health.

Results
The mean age was 56.95 (± 6.4 SD) and the mean duration of imprisonment was 8.93 years (± 6.94 SD). Regarding health conditions, 17.80% had diabetes, 29.62% had hypertension, 10.33% had suicidal ideation, 40.87% were visually impaired, 17.01% had hearing impairment, and 17.64% had mobility impairment. Multivariate analysis revealed that among categories of imprisonment duration, longer time imprisoned was associated with an increased risk of diabetes and hypertension for all groups but was not associated with mobility impairment or suicidal ideation except in the younger group. 

Conclusion
Longer periods of incarceration appear to be associated with a greater occurrence of diabetes and hypertension in older prisoners. Sensory impairments and suicidal ideation are mainly identified in younger prisoners, while mobility impairments do not appear to be influenced by the time spent in prison. Further research needs to be done in prisons, where the addition of physical performance tests and cognitive tests could help further study geriatric conditions in older prisoners.
DOI: 10.6084/m9.figshare.12034848.v1
title: ITS2 sequences generated using ITS2F/ITSp4

description: Fasta file containing the 556 <i>ITS2</i> barcode sequences generated using primer pair ITS2F/ITSp4 and used in statistical analyses. <br><br>Corresponding scientific paper: Timpano EK, Scheible MKR, Meiklejohn KA (2020). Optimization of the second internal transcribed spacer (<i>ITS2</i>) for characterizing land plants from soil. <i>PLoS ONE</i>.