cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1603528.v1
title: High-performance Kernel Machines with Implicit Distributed Optimization and Randomization

description: We propose a framework for massive-scale training of kernel-based statistical models, based on combining distributed convex optimization with randomization techniques. Our approach is based on a block-splitting variant of the Alternating Directions Method of Multipliers, carefully reconfigured to handle very large random feature matrices under memory constraints, while exploiting hybrid parallelism typically found in modern clusters of multicore machines. Our high-performance implementation supports a variety of statistical learning tasks by enabling several loss functions, regularization schemes, kernels, and layers of randomized approximations for both dense and sparse datasets, in an extensible framework. We evaluate our implementation on large-scale model construction tasks, and provide a comparison against existing sequential and parallel libraries.
DOI: 10.6084/m9.figshare.1603512.v1
title: Data for anvio pangenome example

description: This archive contains anvi'o files for two pangenomes described here: http://merenlab.org/2015/11/14/pangenomics/
DOI: 10.6084/m9.figshare.1603502
title: Area matrix associated with Van Sebille et al data sets

description: csv file of the area of each grid cell (in km2) for the maps shown in Figure 3 of Van Sebille et al (2015), ERL. See also the associated lon and lat fields.
DOI: 10.6084/m9.figshare.1603501
title: Longitude vector associated with Van Sebille et al data sets

description: csv file of the longitude vectors for the maps shown in Figure 3 of Van Sebille et al (2015), ERL. See also the associated lat and area fields.
DOI: 10.6084/m9.figshare.1603500
title: Latitude vector associated with Van Sebille et al data sets

description: csv file of the latitude vectors for the maps shown in Figure 3 of Van Sebille et al (2015), ERL. See also the associated lon and area fields.
DOI: 10.6084/m9.figshare.1603501.v1
title: Longitude vector associated with Van Sebille et al data sets

description: csv file of the longitude vectors for the maps shown in Figure 3 of Van Sebille et al (2015), ERL. See also the associated lat and area fields.
DOI: 10.6084/m9.figshare.1603492
title: A Simple Novel Device for Air Sampling by Electrokinetic Capture

description: A variety of different sampling devices are currently available to acquire air samples for study of the microbiome of the air. All have a degree of technical complexity that limits deployment. Here we evaluate the use of a novel device, which has no technical complexity and is easily deployable. An air-cleaning device powered by electrokinetic propulsion has been adapted to provide a universal method for collecting samples of the aerobiome. Plasma induced charge in aerosol particles causes propulsion to and capture on a counter-electrode. The flow of ions creates net bulk airflow, with no moving parts. A device and electrode assembly have been re-designed from air cleaning technology to provide an average air flow of 120 liters per minute. This compares favorably with current air sampling devices based on physical air pumping. Capture efficiency was determined by comparison with a 0.4 micron polycarbonate reference filter, using fluorescent latex particles in a controlled environment chamber. Performance was compared with the same reference filter method in field studies in three different environments. For 23 common fungal species by qPCR there was 100% sensitivity and apparent specificity of 87%, with the reference filter taken as “gold standard”. Further, analysis bacterial 16S RNA by amplicon sequencing of showed equivalent community structure captured by the electrokinetic device and the reference filter. Unlike other current air sampling methods, capture of particles is determined by charge and so is not controlled by particle mass. We analyzed particle sizes captured from air, without regard to specific analyte by atomic force microscopy: particles at least as low as 100 nM could be captured from ambient air. This work introduces a very simple plug-and-play device that can sample air at a high volume flow rate with no moving parts and collect particles down to the sub-micron range. The performance of the device is substantially equivalent to capture by pumping through a filter for microbiome analysis by quantitative PCR and amplicon sequencing.
DOI: 10.6084/m9.figshare.1603498
title: Mapped solution of microplastic mass based on Van Sebille model

description: csv file for the map shown in Figure 3f of Van Sebille et al (2015), ERL. See also the associated lon, lat and area fields.
DOI: 10.6084/m9.figshare.1603499
title: Mapped solution of microplastic abundance based on Van Sebille model

description: csv file for the map shown in Figure 3e of Van Sebille et al (2015), ERL. See also the associated lon, lat and area fields.
DOI: 10.6084/m9.figshare.1603502.v1
title: Area matrix associated with Van Sebille et al data sets

description: csv file of the area of each grid cell (in km2) for the maps shown in Figure 3 of Van Sebille et al (2015), ERL. See also the associated lon and lat fields.
DOI: 10.6084/m9.figshare.1603498.v2
title: Mapped solution of microplastic mass based on Van Sebille model

description: csv file for the map shown in Figure 3f of Van Sebille et al (2015), ERL. See also the associated lon, lat and area fields.
DOI: 10.6084/m9.figshare.1603499.v1
title: Mapped solution of microplastic abundance based on Van Sebille model

description: csv file for the map shown in Figure 3e of Van Sebille et al (2015), ERL. See also the associated lon, lat and area fields.
DOI: 10.6084/m9.figshare.1603498.v1
title: Solution of microplastic mass based on Van Sebille model

description: csv file for the map shown in Figure 3f of Van Sebille et al (2015), ERL. See also the associated lon, lat and area fields.
DOI: 10.6084/m9.figshare.1603480
title: FragFlow evaluation for Wings corpus

description: Datasets and results of the Wings corpus evaluation in FragFlow. Additional details are described in the original Research Object by Garijo et al: http://purl.org/net/kcap2013RO and the paper: http://dx.doi.org/10.1145/2479832.2479848
DOI: 10.6084/m9.figshare.1603473
title: Results of the FragFlow evaluation performed on the LONI Pipeline

description: Results of the evaluation corresponding to the thesis: "Mining Abstractions in Scientific Workflows" by Daniel Garijo, Oscar Corcho (supervisor) and Yolanda Gil (supervisor). These results are a revision of the evaluations presented in the paper "FragFlow: Automated Fragment Detection in Scientific Workflows" by Garijo et al (DOI: http://dx.doi.org/10.1109/eScience.2014.32), which can be browsed online: http://rohub.linkeddata.es/eScience2014FragFlow/
DOI: 10.6084/m9.figshare.1603474
title: User evaluations from the LONI Pipeline

description: User evaluation of the suggested FragFlow fragments obtained during the analysis of 4 corpora of the LONI Pipeline. Revision of the survey published in http://dx.doi.org/10.1109/eScience.2014.32
DOI: 10.6084/m9.figshare.1603473.v1
title: Results of the FragFlow evaluation performed on the LONI Pipeline

description: Results of the evaluation corresponding to the thesis: "Mining Abstractions in Scientific Workflows" by Daniel Garijo, Oscar Corcho (supervisor) and Yolanda Gil (supervisor). These results are a revision of the evaluations presented in the paper "FragFlow: Automated Fragment Detection in Scientific Workflows" by Garijo et al (DOI: http://dx.doi.org/10.1109/eScience.2014.32), which can be browsed online: http://rohub.linkeddata.es/eScience2014FragFlow/
DOI: 10.6084/m9.figshare.1603480.v1
title: FragFlow evaluation for Wings corpus

description: Datasets and results of the Wings corpus evaluation in FragFlow. Additional details are described in the original Research Object by Garijo et al: http://purl.org/net/kcap2013RO and the paper: http://dx.doi.org/10.1145/2479832.2479848
DOI: 10.6084/m9.figshare.1603474.v2
title: User evaluations from the LONI Pipeline

description: User evaluation of the suggested FragFlow fragments obtained during the analysis of 4 corpora of the LONI Pipeline. Revision of the survey published in http://dx.doi.org/10.1109/eScience.2014.32
DOI: 10.6084/m9.figshare.1603457
title: Comparison of chick, mouse, and rat hair bundle and utricle datasets.

description: Data file with proteins common to chick, mouse, and rat hair bundles. Individual datasets were obtained by mass spectrometry, Comet searching, and PAW protein assembly. Combined dataset was generated by comparing protein symbols.
DOI: 10.6084/m9.figshare.1603458
title: Comparison of chick hair bundle and utricle datasets.

description: Data file comparing chick hair bundles from three separate datasets. Individual datasets were obtained by mass spectrometry, Comet searching, and PAW protein assembly. Combined dataset was generated by comparing protein symbols.
DOI: 10.6084/m9.figshare.1603460
title: Corpus WC4 from the LONI Pipeline

description: Single user corpus, containing large workflows and multiple versions.
DOI: 10.6084/m9.figshare.1603461
title: Brown Adipose Tissue and Obesity

description: The BSc dissertation describes what brown adipose tissue is, the prevalence in adults, the use and activation. It suggests how it can be used in the combat against the obesity epidemic.
DOI: 10.6084/m9.figshare.1603492.v1
title: A Simple Novel Device for Air Sampling by Electrokinetic Capture

description: A variety of different sampling devices are currently available to acquire air samples for study of the microbiome of the air. All have a degree of technical complexity that limits deployment. Here we evaluate the use of a novel device, which has no technical complexity and is easily deployable. An air-cleaning device powered by electrokinetic propulsion has been adapted to provide a universal method for collecting samples of the aerobiome. Plasma induced charge in aerosol particles causes propulsion to and capture on a counter-electrode. The flow of ions creates net bulk airflow, with no moving parts. A device and electrode assembly have been re-designed from air cleaning technology to provide an average air flow of 120 liters per minute. This compares favorably with current air sampling devices based on physical air pumping. Capture efficiency was determined by comparison with a 0.4 micron polycarbonate reference filter, using fluorescent latex particles in a controlled environment chamber. Performance was compared with the same reference filter method in field studies in three different environments. For 23 common fungal species by qPCR there was 100% sensitivity and apparent specificity of 87%, with the reference filter taken as “gold standard”. Further, analysis bacterial 16S RNA by amplicon sequencing of showed equivalent community structure captured by the electrokinetic device and the reference filter. Unlike other current air sampling methods, capture of particles is determined by charge and so is not controlled by particle mass. We analyzed particle sizes captured from air, without regard to specific analyte by atomic force microscopy: particles at least as low as 100 nM could be captured from ambient air. This work introduces a very simple plug-and-play device that can sample air at a high volume flow rate with no moving parts and collect particles down to the sub-micron range. The performance of the device is substantially equivalent to capture by pumping through a filter for microbiome analysis by quantitative PCR and amplicon sequencing.
DOI: 10.6084/m9.figshare.1603461.v1
title: Brown Adipose Tissue and Obesity

description: The BSc dissertation describes what brown adipose tissue is, the prevalence in adults, the use and activation. It suggests how it can be used in the combat against the obesity epidemic.
DOI: 10.6084/m9.figshare.1603460.v1
title: Corpus WC4 from the LONI Pipeline

description: Single user corpus, containing large workflows and multiple versions.
DOI: 10.6084/m9.figshare.1603456
title: A multi-region community model for inference about geographic variation in species richness

description: Data used in the application of the multi-region community model (MRCM) to detection non-detection data collected from bird assemblages in R=8 geographically distinct areas (regions) in northern Italy. We augmented the data for all regions such that M = M_r = 200, i.e., by 200-n_r species for each region. The data file contains the following six objects: dataREG: region-specific covariates; K_tot: number of sampling occasions for each site in each region; M: total number of species in the augmented data set; nsites: total number of sites per region; nspecies: total number of observed species for each region; Yaug_tot: augmented species-by-sites-by-region detection frequency matrix.
DOI: 10.6084/m9.figshare.1603492.v2
title: A Simple Novel Device for Air Sampling by Electrokinetic Capture

description: A variety of different sampling devices are currently available to acquire air samples for study of the microbiome of the air. All have a degree of technical complexity that limits deployment. Here we evaluate the use of a novel device, which has no technical complexity and is easily deployable. An air-cleaning device powered by electrokinetic propulsion has been adapted to provide a universal method for collecting samples of the aerobiome. Plasma induced charge in aerosol particles causes propulsion to and capture on a counter-electrode. The flow of ions creates net bulk airflow, with no moving parts. A device and electrode assembly have been re-designed from air cleaning technology to provide an average air flow of 120 liters per minute. This compares favorably with current air sampling devices based on physical air pumping. Capture efficiency was determined by comparison with a 0.4 micron polycarbonate reference filter, using fluorescent latex particles in a controlled environment chamber. Performance was compared with the same reference filter method in field studies in three different environments. For 23 common fungal species by qPCR there was 100% sensitivity and apparent specificity of 87%, with the reference filter taken as “gold standard”. Further, analysis bacterial 16S RNA by amplicon sequencing of showed equivalent community structure captured by the electrokinetic device and the reference filter. Unlike other current air sampling methods, capture of particles is determined by charge and so is not controlled by particle mass. We analyzed particle sizes captured from air, without regard to specific analyte by atomic force microscopy: particles at least as low as 100 nM could be captured from ambient air. This work introduces a very simple plug-and-play device that can sample air at a high volume flow rate with no moving parts and collect particles down to the sub-micron range. The performance of the device is substantially equivalent to capture by pumping through a filter for microbiome analysis by quantitative PCR and amplicon sequencing.
DOI: 10.6084/m9.figshare.1603445
title: Nanophotonic boost of intermolecular energy transfer

description: We propose a scheme for efficient long-range energy transfer between two distant light emitters separated by more than one wavelength of light, i.e. much beyond the classical Förster radius. A hybrid nanoantenna-waveguide system mediates the transmission of energy, showing enhancements up to 108 as compared to vacuum. Our model shows how energy transfer in nanostructured media can be boosted, beyond the simple donor Purcell enhancement, and in particular for large donor–acceptor separations. The scheme we propose connects realistic emitters and could lead to practical on-chip implementations.
DOI: 10.6084/m9.figshare.1603445.v1
title: Nanophotonic boost of intermolecular energy transfer

description: We propose a scheme for efficient long-range energy transfer between two distant light emitters separated by more than one wavelength of light, i.e. much beyond the classical Förster radius. A hybrid nanoantenna-waveguide system mediates the transmission of energy, showing enhancements up to 108 as compared to vacuum. Our model shows how energy transfer in nanostructured media can be boosted, beyond the simple donor Purcell enhancement, and in particular for large donor–acceptor separations. The scheme we propose connects realistic emitters and could lead to practical on-chip implementations.
DOI: 10.6084/m9.figshare.1603458.v2
title: Wilmarth et al. Data Citation 6. Comparison of chick hair bundle and utricle datasets.

description: Data file comparing chick hair bundles from three separate datasets. Individual datasets were obtained by mass spectrometry, Comet searching, and PAW protein assembly. Combined dataset was generated by comparing protein symbols.
DOI: 10.6084/m9.figshare.1603457.v2
title: Wilmarth et al. Data Citation 7. Comparison of chick, mouse, and rat hair bundle and utricle datasets.

description: Data file with proteins common to chick, mouse, and rat hair bundles. Individual datasets were obtained by mass spectrometry, Comet searching, and PAW protein assembly. Combined dataset was generated by comparing protein symbols.
DOI: 10.6084/m9.figshare.1603492.v3
title: Simple Novel Device for Air Sampling by Electrokinetic Capture

description: A variety of different sampling devices are currently available to acquire air samples for study of the microbiome of the air. All have a degree of technical complexity that limits deployment. Here we evaluate the use of a novel device, which has no technical complexity and is easily deployable. An air-cleaning device powered by electrokinetic propulsion has been adapted to provide a universal method for collecting samples of the aerobiome. Plasma induced charge in aerosol particles causes propulsion to and capture on a counter-electrode. The flow of ions creates net bulk airflow, with no moving parts. A device and electrode assembly have been re-designed from air cleaning technology to provide an average air flow of 120 liters per minute. This compares favorably with current air sampling devices based on physical air pumping. Capture efficiency was determined by comparison with a 0.4 micron polycarbonate reference filter, using fluorescent latex particles in a controlled environment chamber. Performance was compared with the same reference filter method in field studies in three different environments. For 23 common fungal species by qPCR there was 100% sensitivity and apparent specificity of 87%, with the reference filter taken as “gold standard”. Further, analysis bacterial 16S RNA by amplicon sequencing of showed equivalent community structure captured by the electrokinetic device and the reference filter. Unlike other current air sampling methods, capture of particles is determined by charge and so is not controlled by particle mass. We analyzed particle sizes captured from air, without regard to specific analyte by atomic force microscopy: particles at least as low as 100 nM could be captured from ambient air. This work introduces a very simple plug-and-play device that can sample air at a high volume flow rate with no moving parts and collect particles down to the sub-micron range. The performance of the device is substantially equivalent to capture by pumping through a filter for microbiome analysis by quantitative PCR and amplicon sequencing.
DOI: 10.6084/m9.figshare.1603457.v4
title: Comparison of chick, mouse, and rat hair bundle and utricle datasets.

description: Data file with proteins common to chick, mouse, and rat hair bundles. Individual datasets were obtained by mass spectrometry, Comet searching, and PAW protein assembly. Combined dataset was generated by comparing protein symbols.
DOI: 10.6084/m9.figshare.1603458.v3
title: Comparison of chick hair bundle and utricle datasets.

description: Data file comparing chick hair bundles from three separate datasets. Individual datasets were obtained by mass spectrometry, Comet searching, and PAW protein assembly. Combined dataset was generated by comparing protein symbols.
DOI: 10.6084/m9.figshare.1603457.v3
title: Comparison of chick, mouse, and rat hair bundle and utricle datasets.

description: Data file with proteins common to chick, mouse, and rat hair bundles. Individual datasets were obtained by mass spectrometry, Comet searching, and PAW protein assembly. Combined dataset was generated by comparing protein symbols.
DOI: 10.6084/m9.figshare.1603458.v5
title: Comparison of chick hair bundle and utricle datasets.

description: Data file comparing chick hair bundles from three separate datasets. Individual datasets were obtained by mass spectrometry, Comet searching, and PAW protein assembly. Combined dataset was generated by comparing protein symbols.
DOI: 10.6084/m9.figshare.1603458.v4
title: Comparison of chick hair bundle and utricle datasets.

description: Data file comparing chick hair bundles from three separate datasets. Individual datasets were obtained by mass spectrometry, Comet searching, and PAW protein assembly. Combined dataset was generated by comparing protein symbols.
DOI: 10.6084/m9.figshare.1603419
title: General Defect Classification Usage Package

description: The General Defect Classification (GDC) is a classification scheme that treats code 1) defects, 2) changes (“fixes of the defects”), 3) warnings from automated static analyzer tools (ASATs), and 4) the rules that generate these warnings (“checkers”) as first class citizens and allows their classification under one common topology.
DOI: 10.6084/m9.figshare.1603420.v1
title: Gaussian Job Archive for C6H13F5O5S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1603412
title: 1 - Airport Mobile Website Evaluation: Terminal Navigation & Commercial Revenue - DATASET

description: This set of data includes all data used for an article titled: Airport Mobile Website Evaluation: Terminal Navigation & Commercial Revenue. This is part of a PhD Thesis titled Airport Mobile Internet.
DOI: 10.6084/m9.figshare.1603418
title: 2 - Airport mobile Internet as an indicator of innovation

description: This data was used for the paper Airport Mobile Internet as an indıcator of innovation. This article
DOI: 10.6084/m9.figshare.1603418.v2
title: 2 - Airport mobile Internet as an indicator of innovation

description: This data was used for the paper Airport Mobile Internet as an indıcator of innovation. This article
DOI: 10.6084/m9.figshare.1603419.v1
title: General Defect Classification Usage Package

description: The General Defect Classification (GDC) allows to categorize software defects, warnings and changes in the code.
DOI: 10.6084/m9.figshare.1603418.v1
title: Airport mobile Internet as an indicator of innovation

description: This data was used for the paper Airport Mobile Internet as an indıcator of innovation. This article
DOI: 10.6084/m9.figshare.1603412.v1
title: new fileset

description: This set of data includes all data used for an article titled: Airport Mobile Website Evaluation: Terminal Navigation & Commercial Revenue. This is part of a PhD Thesis titled Airport Mobile Internet.
DOI: 10.6084/m9.figshare.1603400
title: Gaussian Job Archive for C6H16O6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.