cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5886043
title: Global indicators framework for socially responsible research and innovation (RRI): How to monitor public and researcher perspectives (Supplemental material)

description: This data upload provides a detailed account of indicators that can be used to measure RRI progress around the world against the UNESCO Recommendation for Science and Scientific Researchers at the level of individual researchers and public opinion. This data upload provides supplemental material for an article in Open Research Europe entitled, 'Global indicators framework for socially responsible research and innovation (RRI): How to monitor public and researcher perspectives'. Abstract for main article: As calls for more socially responsible research and innovation (RRI) policies and practices grow more insistent, the need for high quality indicators that can be used to evaluate progress is becoming increasingly important. Given the global nature of science, such indicators need to be relevant to countries across all world regions. Moreover, the methodological quality of indicators is critical to provide a strong foundation for long-term comparative measurement of the impacts of different kinds of policy intervention. There is a practical challenge in this effort relating to the uneven mechanisms for data collection and analysis available in different countries. There is also a geopolitical challenge in gaining buy-in from countries with very different, and sometimes competing, agendas. Here, the 2017 UNESCO-led Recommendation on Science and Scientific Researchers is highlighted as an existing vehicle that can enable cooperation on globally comparative measurement of socially responsible research and innovation. In particular, the quadrennial monitoring of the implementation of this wide-ranging global policy instrument that has been ratified by 195 countries affords a unique opportunity to add value for these countries by linking RRI to the 2017 Recommendation while establishing benchmark indicators for RRI more generally. As a practical and methodological contribution to the global community of science and innovation policymakers, researchers and research and innovation stakeholders committed to socially responsible research, this report contains specific, detailed survey questions and response options focusing on the public opinion and individual researchers’ level of measurement. It provides details of sources of benchmark survey data that have readily available open data that can be used to benchmark the development of socially responsible research and innovation over time from the vantage points of the public and researchers around the world. The aim of this kind of indicators framework is to enable evidence-based practice in socially responsible research and innovation. Robust and practical RRI measurement on a global scale can reduce the risk that well-intentioned but ill-conceived RRI policy and practice interventions create undetected, unchecked, and unreformed negative impacts in practice.
DOI: 10.6084/m9.figshare.12401168.v16
title: The Brain Hierarchy Score

description: Here we provide data used in Nonaka, Majima, Aoki, & Kamitani (2021) Brain hierarchy score: Which deep neural networks are hierarchically brain-like? <i>iScience</i>.<br><br>See also https://github.com/KamitaniLab/BHscore.<br><br>History:<br><br>2021-12-24 Add encoding accuracy data (encoding_accuracy.zip)<br><br>2020-08-08 Add DNN unit activation data (features-*.zip)<br><br>2020-08-03 Update directory organization in decoding_accuracy.zip<br>
DOI: 10.5281/zenodo.5886077
title: Characteristics of studies selected for the meta-analysis

description: Characteristics of studies selected for the meta-analysis
DOI: 10.5281/zenodo.5886076
title: Characteristics of studies selected for the meta-analysis

description: Characteristics of studies selected for the meta-analysis
DOI: 10.25345/c5gg5k
title: MassIVE MSV000088711 - Allosteric inhibition of PPM1D serine/threonine phosphatase via an altered conformational state
title: Detailed characterization of PPM1D phosphatase by HDX-MS: conformational dynamics of the pathogenic truncated form (1-420) found in various cancers, the effect of different truncations and mutations and mapping an inhibitor binding site.
DOI: 10.6084/m9.figshare.18851201
title: Stability improvement mechanism due to less charge accumulation in ternary polymer solar cells

description: Data sets for the paper "Stability improvement mechanism due to less charge accumulation in ternary polymer solar cells".<br>
DOI: 10.6084/m9.figshare.18851201.v1
title: Stability improvement mechanism due to less charge accumulation in ternary polymer solar cells

description: Data sets for the paper "Stability improvement mechanism due to less charge accumulation in ternary polymer solar cells".<br>
DOI: 10.5281/zenodo.5594227
title: Invalid Upload

description: Invalid upload now
DOI: 10.5281/zenodo.5594226
title: Invalid Upload

description: Invalid upload now
DOI: 10.5281/zenodo.5861513
title: Grid-graph modeling of emergent neuromorphic dynamics and heterosynaptic plasticity in memristive nanonetworks - Dataset

description: This is the dataset of "Grid-graph modeling of emergent neuromorphic dynamics and heterosynaptic plasticity in memristive nanonetworks"
description: Part of this work was supported by the European project MEMQuD, code 20FUN06, funder ID: 10.13039/100014132. This project (EMPIR 20FUN06 MEMQuD) has received funding from the EMPIR programme co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation programme.
DOI: 10.5281/zenodo.5861512
title: Grid-graph modeling of emergent neuromorphic dynamics and heterosynaptic plasticity in memristive nanonetworks - Dataset

description: This is the dataset of "Grid-graph modeling of emergent neuromorphic dynamics and heterosynaptic plasticity in memristive nanonetworks"
description: Part of this work was supported by the European project MEMQuD, code 20FUN06, funder ID: 10.13039/100014132. This project (EMPIR 20FUN06 MEMQuD) has received funding from the EMPIR programme co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation programme.
DOI: 10.6084/m9.figshare.18852341
title: Datas_of_Ogita_et_al

description: Accession numbers and low datas for Ogita et al. Evolutionary analyses for vertebrate sox genes.
DOI: 10.6084/m9.figshare.18852341.v1
title: Datas_of_Ogita_et_al

description: Accession numbers and low datas for Ogita et al. Evolutionary analyses for vertebrate sox genes.
DOI: 10.5281/zenodo.5885750
title: HEAR NeurIPS 2021 Datasets (Holistic Evaluation of Audio Representations)

description: <strong>NOTE: The datasets have different open licenses. Please see LICENSE.txt for each individual dataset's license.</strong> These are the evaluation tasks for the HEAR (Holistic Evaluation of Audio Representations) 2021 NeurIPS challenge. The aim of this challenge is to develop a general-purpose audio representation that provides a strong basis for learning in a wide variety of tasks and scenarios. The HEAR 2021 challenge invites you to create an audio embedding that is as holistic as the human ear, i.e., one that performs well across a variety of everyday domains: What approach best generalizes to a wide range of downstream audio tasks without fine-tuning?<br> <br> HEAR 2021 evaluates audio representations using a benchmark suite across a variety of domains, including speech, environmental sound, and music. For more information, see the HEAR 2021 website and upcoming PMLR journal article. Datasets were all normalized to a common human-readable format using hearpreprocess. This Zenodo archive has all audio resampled to 48000Hz. For other sampling rates (16000, 22050, 32000, 44100), please download files (requester pays) from Google Storage gs://hear2021-archive/tasks/ or AWS s3://hear2021-archive/tasks/ The TFDS datasets (crema-d, gztan genre, and gztan music/speech) had a preprocessing bug and are retracted. We will release fixed versions of these datasets.
DOI: 10.21335/nmdc-496562593
title: Individual samples of Norwegian Spring Spawning herring 1935-2019

description: The Institute of Marine Research has collected individual samples of Norwegian Spring Spawning Herring from the Norwegian Sea and the Barents Sea, both from the fishery and from surveys, in the in the period 1935-2019.
DOI: 10.6084/m9.figshare.15164298
title: Free healthcare for some, fee-paying for the rest: adaptive practices and ethical issues in rural communities in the district of Boulsa, Burkina Faso

description: In Burkina Faso, in July 2016, user fees were removed at all public healthcare facilities, but only for children under 60 months of age and for “mothers”, i.e. for reproductive care. This study was conducted in five rural communities in Boulsa District (Burkina Faso) (1) to understand the perceptions and practices of stakeholders regarding compliance with eligibility criteria for free care and (2) to explore the ethical tensions that may have resulted from this policy. Semi-directed individual interviews (<i>n </i>= 20) were conducted with healthcare personnel and mothers of young children. Interviews were recorded and transcribed, and a thematic content analysis was conducted. The study reveals the presence of practices to circumvent strict compliance with the eligibility criteria for free access. These include hiding the exact age of children over 60 months and using eligible persons for the benefit of others. These practices result from ethical and economic tensions experienced by the beneficiaries. They also raise dilemmas among healthcare providers, who have to enforce compliance with the eligibility criteria while realizing the households’ deprivation. Informal adjustments are introduced at the community level to reconcile the healthcare providers’ dissonance. Local reinvention mechanisms help in overcoming ethical tensions and in implementing the policy.
DOI: 10.6084/m9.figshare.15164298.v1
title: Free healthcare for some, fee-paying for the rest: adaptive practices and ethical issues in rural communities in the district of Boulsa, Burkina Faso

description: In Burkina Faso, in July 2016, user fees were removed at all public healthcare facilities, but only for children under 60 months of age and for “mothers”, i.e. for reproductive care. This study was conducted in five rural communities in Boulsa District (Burkina Faso) (1) to understand the perceptions and practices of stakeholders regarding compliance with eligibility criteria for free care and (2) to explore the ethical tensions that may have resulted from this policy. Semi-directed individual interviews (<i>n </i>= 20) were conducted with healthcare personnel and mothers of young children. Interviews were recorded and transcribed, and a thematic content analysis was conducted. The study reveals the presence of practices to circumvent strict compliance with the eligibility criteria for free access. These include hiding the exact age of children over 60 months and using eligible persons for the benefit of others. These practices result from ethical and economic tensions experienced by the beneficiaries. They also raise dilemmas among healthcare providers, who have to enforce compliance with the eligibility criteria while realizing the households’ deprivation. Informal adjustments are introduced at the community level to reconcile the healthcare providers’ dissonance. Local reinvention mechanisms help in overcoming ethical tensions and in implementing the policy.
DOI: 10.5281/zenodo.4008209
title: Artifacts of PEARL

description: This repository contain the artifacts of a paper titled "Program Repair as a Code Completion Problem: Addressing the Challenge of Accurately Locating Fine-Grained Buggy Code Elements" under review by ICSE'21. The files <strong>prediction_CoCoNut.csv</strong> and <strong>prediction_ManySStuBs4J.csv</strong> illustrate the prediction results of <strong>BEP</strong> on the two datasets, in which the column <em>element_Rank</em> shows the ranking of buggy element and the column <em>rank</em> is for operation path. The file <strong>Pipeline_Results.zip</strong> contains the results of our repair pipeline on the 111 single-token bugs. In each folder, <em>rem.txt</em> corresponds to the buggy line, <em>add.txt</em> corresponds to the correct line, and <em>context.txt</em> corresponds to the whole buggy method. These three files are required inputs for each prediction. <em>query.txt</em> is the content sent to <em>AnyCodeGen </em>and the returned code fragment is stored in <em>result.txt</em>. We also open the cleaned dataset of ManySStuBs4J which only contains single-token bugs in <strong>Single-token_bugs_in_ManySStuBs4J.zip</strong>. In this file, each bug is corresponding to three lines with the same line number in three different files which are <em>rem.txt</em>, <em>add.txt</em>, and <em>context.txt</em>, respectively representing the buggy line, correct line, and the buggy method. This storage style follows the training set of CoCoNut. Note that we do not release our pre-processed dataset of CoCoNut sinse it is too large. We encourage researchers to process this dataset based on their own needs. Moreover, we do provide the script we used for selecting single-token bugs which is <strong>single-token_selection.py</strong>. We also note there is no visual interface for the newly added bugs in Defects4J-V2.0. We thus provide our script for selecting single-token bugs (<strong>getSingle-token_bugs_from_D4J.py</strong>) from these bugs, making it easy for others to reproduce our experiment. <strong>Case Study:</strong> <strong>PEARL</strong> does not work well on method name-related fix. For the following bug (Closure-10), our BEP model successfully predicts the oracle operation path as No.2. <pre><code class="language-java">- return allResultsMatch(n, MAY_BE_STRING_PREDICATE); + return anyResultsMatch(n, MAY_BE_STRING_PREDICATE);</code></pre> Nonetheless, we have to change this statement into "<strong>return ??</strong>" when querying <strong>AnyCodeGen</strong> due to the format restriction of it. Unfortunately, <strong>AnyCodeGen</strong> cannot synthesize such a detailed method call, thus leading to the failure of PEARL of repairing this bug. The source code of <strong>PEARL</strong> will be open-access upon acceptance.
DOI: 10.5281/zenodo.3992731
title: Artifacts of PEARL

description: This repository contain the artifacts of a paper titled "Program Repair as a Code Completion Problem: Addressing the Challenge of Accurately Locating Fine-Grained Buggy Code Elements" under review by ICSE'21. The files <strong>prediction_CoCoNut.csv</strong> and <strong>prediction_ManySStuBs4J.csv</strong> illustrate the prediction results of <strong>BEP</strong> on the two datasets, in which the column <em>element_Rank</em> shows the ranking of buggy element and the column <em>rank</em> is for operation path. The file <strong>Pipeline_Results.zip</strong> contains the results of our repair pipeline on the 111 single-token bugs. In each folder, <em>rem.txt</em> corresponds to the buggy line, <em>add.txt</em> corresponds to the correct line, and <em>context.txt</em> corresponds to the whole buggy method. These three files are required inputs for each prediction. <em>query.txt</em> is the content sent to <em>AnyCodeGen </em>and the returned code fragment is stored in <em>result.txt</em>. We also open the cleaned dataset of ManySStuBs4J which only contains single-token bugs in <strong>Single-token_bugs_in_ManySStuBs4J.zip</strong>. In this file, each bug is corresponding to three lines with the same line number in three different files which are <em>rem.txt</em>, <em>add.txt</em>, and <em>context.txt</em>, respectively representing the buggy line, correct line, and the buggy method. This storage style follows the training set of CoCoNut. Note that we do not release our pre-processed dataset of CoCoNut sinse it is too large. We encourage researchers to process this dataset based on their own needs. Moreover, we do provide the script we used for selecting single-token bugs which is <strong>single-token_selection.py</strong>. We also note there is no visual interface for the newly added bugs in Defects4J-V2.0. We thus provide our script for selecting single-token bugs (<strong>getSingle-token_bugs_from_D4J.py</strong>) from these bugs, making it easy for others to reproduce our experiment. <strong>Case Study:</strong> <strong>PEARL</strong> does not work well on method name-related fix. For the following bug (Closure-10), our BEP model successfully predicts the oracle operation path as No.2. <pre><code class="language-java">- return allResultsMatch(n, MAY_BE_STRING_PREDICATE); + return anyResultsMatch(n, MAY_BE_STRING_PREDICATE);</code></pre> Nonetheless, we have to change this statement into "<strong>return ??</strong>" when querying <strong>AnyCodeGen</strong> due to the format restriction of it. Unfortunately, <strong>AnyCodeGen</strong> cannot synthesize such a detailed method call, thus leading to the failure of PEARL of repairing this bug. The source code of <strong>PEARL</strong> will be open-access upon acceptance.
DOI: 10.57982/ez8b-p236
title: Project PrEPare - An Open Label Demonstration Project and Phase II Safety Study of Pre-exposure Prophylaxis Use Among Young Men Who Have Sex With Men (YMSM) in the United States

description: A pre-exposure prophylaxis (PrEP) demonstration project and Phase II safety study to obtain additional data on the safety of emtricitabine/tenofovir (FTC/TDF (Truvada�)) and evaluate patterns of use, rates of adherence, and patterns of sexual risk behavior among YMSM (inclusive of transgender women) who were provided with open label FTC/TDF and information on the safety and efficacy of PrEP from prior studies. This project also explored the feasibility and acceptability of implementing two different efficacious risk reduction interventions prior to provision of PrEP - Many Men, Many Voices (3MV) and Personalized Cognitive Counseling (PCC).
DOI: 10.57982/jeeh-sc79
title: Initial Intervention Development for Newly Diagnosed Youth with HIV

description: This study was an exploratory, qualitative investigation of the challenges, strengths, and needed areas of support associated with receiving an HIV diagnosis among youth living with HIV. Qualitative interviews were conducted with health care providers working with adolescents living with HIV, and focus groups and individual interviews were conducted with adolescents living with HIV (ages 16-24). Findings from this study were used to create an outline and development plan for a culturally-sensitive and developmentally appropriate intervention (or set of interventions) for youth recently diagnosed with HIV.
DOI: 10.57982/5y8r-b508
title: Renal, Endocrine, and Bone Changes in Response to Treatment with Coformulated Emtricitabine-Tenofovir for Pre-Exposure HIV Prophylaxis (PrEP) in HIV Uninfected Young Men Who Have Sex with Men, a Sub-Study of ATN 110 and/or ATN 113

description: An observational cohort sub-study of subjects enrolled in ATN 110 or ATN 113, and prescribed daily coformulated emtricitabine/tenofovir (FTC/TDF (Truvada�)) as part of ATN 110 or ATN 113, with the primary objective of measuring the magnitude of change in parathyroid hormone (PTH) from baseline to week 48. Renal, endocrine, and bone biochemistry changes and pathophysiology were explored as secondary objectives. Subjects were HIV uninfected YMSM, inclusive of transgender women, and were to be followed for at least 48 weeks; seronegative subjects in the Extension Phase of ATN 110 or ATN 113 were followed for an additional 48 weeks in the Extension Phase of ATN 117.
DOI: 10.57982/jvb7-xj28
title: Participation in a Biomedical HIV Prevention Clinical Trial: Perspectives of Younger and Older Young Men Who Have Sex With Men (YMSM) and Transgender Women Who Have Sex With Men

description: ATN 137 examined the primacy of decisional autonomy and associations of autonomous research consent and subsequent participation-associated outcomes among younger and older young men who have sex with men (YMSM) and transgender women who have sex with men and were enrolled in ATN 110 or ATN 113. The study also explored participants’ experiences with other unique study-related procedures, such as self-testing for HIV and use of Wisepill devices.
DOI: 10.57982/57hn-3043
title: Randomized Controlled Trial of Induced Hypothermia for Hypoxic-Ischemic Encephalopathy in Term Infants

description: This large multicenter trial tested whether cerebral cooling initiated within 6 hours of birth and continued for 72 hours would reduce the risk of death and moderate to severe neurodevelopmental injury at 18-22 months corrected age. Infants at least 36 weeks gestation with an abnormal blood gas within 1 hour of birth, or a history of an acute perinatal event and a 10-min Apgar score <5, or continued need for ventilation were screened. Following a neurological exam, those with moderate to severe encephalopathy were randomized to a 72-hour period of total body cooling (cooling blanket, followed by slow re-warming).
DOI: 10.57982/mp7e-x386
title: Treatment for Depression Among HIV-Infected Youth

description: A two-phase study that tested a behavioral intervention to treat depression in HIV-positive adolescents and young adults. Sites were assigned to either the Combination Cognitive Behavioral Therapy (CBT) and Medication Management (MM) (COMB) group or the Treatment as Usual (TAU) group. Phase I was a 24-week pilot test of CBT and MM manuals at sites assigned to the COMB group. Phase II was a feasibility study of the revised CBT and MM manuals. The intervention targeted symptoms of depression, motivation for medical and depression treatment, adherence to medical care, and wellness behaviors.
DOI: 10.57982/6yz1-3s64
title: Randomized, Placebo-Controlled Trial of Safety and Effectiveness of Vitamin D Supplement to Improve Tubular Reabsorption of Phosphate and Decrease Bone Turnover in HIV-infected Adolescents and Young Adults Treated with ART Containing Tenofovir

description: This study was a randomized, double-blind, placebo-controlled prospective study. The study tested the hypothesis that in a population of adolescents and young adults with HIV infection who are being treated with tenofovir as part of an antiretroviral (ARV) combination regimen, vitamin D supplementation will decrease renal phosphate loss, increase plasma phosphate, decrease plasma PTH, and improve markers of bone turnover, including a decrease in plasma N-telopeptide and BAP. A randomized, placebo-controlled trial was conducted over 12 weeks, with four arms: those who received tenofovir and vitamin D, those who received tenofovir and no vitamin D, those who received vitamin D and no tenofovir, and those who received neither tenofovir nor vitamin D.
DOI: 10.57982/qf66-6w16
title: Development of a Secondary Prevention Intervention Targeting HIV-Positive Black Young Men Who Have Sex With Men

description: This study conducted formative research to develop a culturally appropriate secondary prevention intervention for HIV-positive black young men who have sex with men (B-YMSM). At two AMTU sites, a total of four focus groups guided the selection of the intervention content areas and the development of the intervention manual. The intervention aimed to address increasing engagement in HIV treatment, improving medication adherence, reducing sexual risk behaviors, reducing substance use behaviors, and increasing HIV status disclosure.
DOI: 10.57982/y9rz-pg50
title: Adolescent Master Protocol, PH200

description: The PHACS AMP study is designed to define the impact of HIV infection and antiretroviral therapy on pre-adolescents and adolescents with perinatal HIV infection. Domains investigated include growth and sexual maturation; metabolic risk factors for cardiovascular disease; cardiac function; bone health; neurologic, neurodevelopment, language, hearing, and behavioral function; and adolescent gynecology and HPV infection.  Biospecimens are available.