cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kbf99y
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Ardea brachyrhyncha)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 21 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019774-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.apl.29603783
title: Supplement Number 1

description: Supplemental Material: Temperature and bias
voltage control of helicity-dependent photocurrent in
PbTe/PbEuTe quantum wells
DOI: 10.60893/figshare.apl.29603783.v1
title: Supplement Number 1

description: Supplemental Material: Temperature and bias
voltage control of helicity-dependent photocurrent in
PbTe/PbEuTe quantum wells
DOI: 10.15468/dl.5c5zzu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Ardea brachyrhyncha)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019773-250802193616735/datasets/export for details.
DOI: 10.15468/dl.dx6qqz
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ABY8052"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019775-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ac9rg6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "Country is Antigua and Barbuda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019776-250802193616735/datasets/export for details.
DOI: 10.15468/dl.w3xb28
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "Country is Bahamas",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019778-250802193616735/datasets/export for details.
DOI: 10.15468/dl.vskmrq
title: Occurrence Download

description: A dataset containing 8000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8000 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019777-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16751238
title: NDVI Fluctuations in Alpine River Regulate Top-down Control of the Microbial Community Assembly and Potential Function on the Tibetan Plateau

description: The community structure and functional potential of planktonic microbiomes in water and benthic microbiomes in alpine riparian sediments were analyzed under two distinct normalized difference vegetation index (NDVI) fluctuation conditions on the Tibetan Plateau, using high-throughput sequencing and a CNPS gene chip. 

NDVI values were extracted from the 2023 monthly average dataset (https://www.earthdata.nasa.gov). This method was also applied to extract temperature and precipitation data (https://www.geodata.cn/data). The site information data is saved in a CSV file named Site information.csv.

Environmental parameters, including pH, electrical conductivity (EC, μS/cm), oxidation-reduction potential (ORP, mv), pressure (mmHg), dissolved oxygen (DO, mg/L), and water temperature (WT, °C), dissolved total nitrogen (TN, mg/L), dissolved total carbon (TC, mg/L), dissolved total organic carbon (TOC, mg/L), TIC (TIC, mg/L), and dissolved total phosphorus (TP, mg/L). In addition, the sediment was lyophilized, ground, and then used for the analysis of total carbon (STC, mg/g), total organic carbon (STOC, mg/g), total nitrogen (STN, mg/g), total phosphorus (STP, mg/g), available phosphorus (SAP, mg/g), and dissolved total sulfur (STS, mg/g). The water content (WC, %). The environmental parameters data is saved in a CSV file named Environmental parameters.csv.

DNA was extracted from 180 samples (90 water and 90 sediment). Seventy-one functional genes, carbon (C), nitrogen (N), phosphorus (P), and sulfur (S) cycling, were analyzed by high-throughput qPCR on a Wafergen Smart Chip Real-Time qPCR platform. The data is saved in a CSV file named Functional gene abundance.csv.
DOI: 10.5281/zenodo.16751239
title: NDVI Fluctuations in Alpine River Regulate Top-down Control of the Microbial Community Assembly and Potential Function on the Tibetan Plateau

description: The community structure and functional potential of planktonic microbiomes in water and benthic microbiomes in alpine riparian sediments were analyzed under two distinct normalized difference vegetation index (NDVI) fluctuation conditions on the Tibetan Plateau, using high-throughput sequencing and a CNPS gene chip. 

NDVI values were extracted from the 2023 monthly average dataset (https://www.earthdata.nasa.gov). This method was also applied to extract temperature and precipitation data (https://www.geodata.cn/data). The site information data is saved in a CSV file named Site information.csv.

Environmental parameters, including pH, electrical conductivity (EC, μS/cm), oxidation-reduction potential (ORP, mv), pressure (mmHg), dissolved oxygen (DO, mg/L), and water temperature (WT, °C), dissolved total nitrogen (TN, mg/L), dissolved total carbon (TC, mg/L), dissolved total organic carbon (TOC, mg/L), TIC (TIC, mg/L), and dissolved total phosphorus (TP, mg/L). In addition, the sediment was lyophilized, ground, and then used for the analysis of total carbon (STC, mg/g), total organic carbon (STOC, mg/g), total nitrogen (STN, mg/g), total phosphorus (STP, mg/g), available phosphorus (SAP, mg/g), and dissolved total sulfur (STS, mg/g). The water content (WC, %). The environmental parameters data is saved in a CSV file named Environmental parameters.csv.

DNA was extracted from 180 samples (90 water and 90 sediment). Seventy-one functional genes, carbon (C), nitrogen (N), phosphorus (P), and sulfur (S) cycling, were analyzed by high-throughput qPCR on a Wafergen Smart Chip Real-Time qPCR platform. The data is saved in a CSV file named Functional gene abundance.csv.
DOI: 10.15468/dl.my72ew
title: Occurrence Download

description: A dataset containing 3483 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pheugopedius eisenmanni)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 3483 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019779-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16749990
title: Trade-off Analysis of Classical and Deep Learning Models for Robust Brain Tumor Detection

description: Paper:

Trade-off Analysis of Classical and Deep Learning Models for Robust Brain Tumor Detection.

 

Code details: 

Please see the GitHub repository for code and usage instructions: 

https://github.com/yangzi334/BrainTumorClassification

 

Uploaded Contents in Zenodo:

- Main



Main raw dataset (Brain tumor data.rar)

Cleaned main raw dataset (brain tumor binary data.zip)

After splitting 'cleaned main raw dataset' with ratio 0.7, 0.15, 0.15,  'train.zip', 'validataion.zip', 'test.zip' were generated.


- External



External raw dataset (brain tumor external data.zip)

Cleaned external dataset (brain tumor external binary data.zip)


Note: In the data preprocessing step, before we generated 'brain tumor external data.zip' , we first used phash alogrithm to compare total images from external source data (brain tumor external raw.zip) against training images from the main data (train_folder.zip), any visually identical or nearly identical images will be removed from the external dataset. The details can be found in the 'check image leakage.ipynb' in the GitHub. 

 

Training models:

SVN_HOG_new.zip



best_svm_hog_model.pkl — Final support vector machine (SVM) model trained with HOG features. 


 

ResNet18.zip



best_resnet18_overall.pth — Final fine-tuned resnet18 model weights with best overall validation performance.

best_resnet18_run1.pth — Best checkpoint for resnet18 from run 1.

best_resnet18_run2.pth — Best checkpoint for resnet18 from run 2.

best_resnet18_run3.pth — Best checkpoint for resnet18 from run 3.


 

Vit_B_16_new.zip





best_vit_overall.pth — Final fine-tuned ViT-B/16 model weights with best overall validation performance.




best_vit_run1.pth — Best checkpoint for ViT-B/16 from run 1.




best_vit_run2.pth — Best checkpoint for ViT-B/16 from run 2.




best_vit_run3.pth — Best checkpoint for ViT-B/16 from run 3.



 

SimCLR.zip



best_simclr_overall.pth — Final fine-tuned simclr model weights with best overall validation performance.

best_simclr_run1.pth — Best checkpoint for simclr from run 1.

best_simclr_run2.pth — Best checkpoint for simclr from run 2.

best_simclr_run3.pth — Best checkpoint for simclr from run 3.

best_simclr_encoder_only.pth — SimCLR encoder weights only (trained with contrastive learning, no classifier head). Can be used for downstream tasks
DOI: 10.15468/dl.pr7xkz
title: Occurrence Download

description: A dataset containing 14245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pheugopedius euophrys)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 14245 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019780-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebxv3d
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Ardea brachyrhyncha)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019782-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t8k4q3
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoplobatrachus chinensis",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 124 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019781-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rh6xx8
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Brycon alburnus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 29 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019784-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.de8vrr
title: Occurrence Download

description: A dataset containing 39233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pheugopedius fasciatoventris)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 39233 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019783-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16749521
title: MD Trajectory Files of the Peptide_design Project

description: All data files included in the DePocket project, including molecular dynamics simulation configuration files, trajectory files, and data analysis files for peptide-xanthine oxidase complexes, as well as scoring results from the peptide generation and screening process.
DOI: 10.15468/dl.eh653t
title: Occurrence Download

description: A dataset containing 10657951 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "GadmGid is GBR",
 "TaxonKey is Plantae",
 "Year 2010-2024"
 ]
}

 The dataset includes 10657951 records from 286 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011892-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.px4x77
title: Occurrence Download

description: A dataset containing 33437688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "GadmGid is GBR",
 "TaxonKey is Aves",
 "Year 2010-2024"
 ]
}

 The dataset includes 33437688 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011888-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dq98b4
title: Occurrence Download

description: A dataset containing 5384534 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "GadmGid is GBR",
 "TaxonKey is one of (Hesperiidae, Papilionidae, Pieridae, Lycaenidae, Riodinidae, Nymphalidae)",
 "Year 2010-2024"
 ]
}

 The dataset includes 5384534 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011931-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14466/cefasdatahub.116
title: Predicted sedimentation rates data for the Baltic Sea derived from samples from 1992 - 2019

description: Spatial prediction of the sediment accumulation rate, provided as a .geotif file (as an average linear rate in cm yr-1 since 1986) for the Baltic Sea created using a machine learning approach.  Predicted rates of sediment accumulation vary from 0.08-1.67 cm yr-1. Field measurements were acquired between 1992 and 2012 as compiled by EMODnet Geology. Predictor variables were derived from 2003 to 2018 from various sources including EMODnet Bathymetry, Copernicus and Cefas staff. Modelling subsequently occurred in 2019 by Cefas. Further detail on the data sources are provided in the associated manuscript. To access and download the data contact data.manager@cefas.co.uk. For additional details regarding how this layer was generated see the publication associated with this data: https://doi.org/10.1016/j.csr.2020.104325. The spatial prediction of sediment accumulation rates were generated for the Baltic Sea using a machine learning approach. In short, a range of predictor variables that were thought to relate to either marine dispersal or the proximity to a sediment source. These full coverage predictor variables included: derivatives of the bathymetry, estimates of sediment turbidity, distance from river mouths, estimates of the energy of the Baltic Sea and a description of the substrate type. A random forest model was fit to the predictor variables using field observations. The model was then used to predict sediment accumulation rate for the Baltic Sea.
DOI: 10.15468/dl.t6qb6b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Ardea brachyrhyncha)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019786-250802193616735/datasets/export for details.
DOI: 10.15468/dl.hk7zjg
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAC7549"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019789-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tr326z
title: Occurrence Download

description: A dataset containing 30000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Ardea brachyrhyncha)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 30000 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019788-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w7bjr2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "Country is Bangladesh",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019790-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwqakk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "Country is Barbados",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019791-250802193616735/datasets/export for details.
DOI: 10.15468/dl.catryd
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "Country is Belize",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019792-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.