cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/8a1xo3/xc2dxb
title: kiwi-angle-0-trial-8.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/ygnl9o
title: cauliflower-angle-90-trial-5.zip

description: :unav
DOI: 10.17632/gttr4zccj3.1
title: Sample Methyl Status
DOI: 10.17632/n8z3cxhcgn.1
title: Sample Demography
DOI: 10.17632/r8p4d5n27j.1
title: Returning Adult MSAFLP Information
DOI: 10.21227/41ss-xf07
title: The Turn-off Behavior of Superjunction MOSFETs Influenced by the Junction Capacitance in the Freewheel Diodes

description: We investigated the turn-off waveforms of Superjunction (SJ) silicon MOSFETs with respect to their own charge imbalance by experiments as well as by device simulations.When SJ-MOSFETs are used for chopper circuits we find a unique hump in the current waveform during the turn-off transient. The magnitude of the hump shape waveform drastically depends on the charge imbalance (CIB) in the SJ structure.For N-type rich CIB we find larger current hump while the hump is reduced or disappear for P-type rich CIB. Furthermore the junction capacitance in the freewheel diode (FWD) influences on the magnitude of the current hump. Larger junction capacitance enhances the magnitude of the current hump.These experiments and simulations indicate that the internal physics in the semiconductor directly affects the switching waveforms.In this article we also propose the novel SJ device structure to stabilize the variation of switching waveforms and turn-off loss (Eoff).
DOI: 10.5281/zenodo.3374990
title: PyADF-Upload

description: PyADF upload description
DOI: 10.5281/zenodo.3374991
title: PyADF-Upload

description: PyADF upload description
DOI: 10.7910/dvn/8a1xo3/0jelra
title: pepper-angle-0-trial-4.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/0vpdp1
title: grape-angle-0-trial-1.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/2nvctf
title: lettuce-angle-0-trial-1.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/4swxuj
title: cauliflower-angle-0-trial-2.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/9rt5hj
title: cantaloupe-angle-90-trial-5.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/ancerv
title: cauliflower-angle-90-trial-2.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/asoigm
title: cantaloupe-angle-90-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/cqfvhb
title: honeydew-angle-90-trial-6.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/fz79yl
title: strawberry-angle-90-trial-1.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/gfkuf3
title: pepper-angle-0-trial-4.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/ggtce5
title: celery-angle-90-trial-4.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/gjlha5
title: broccoli-angle-90-trial-6.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/hxuq3d
title: apple-angle-0-trial-9.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/jogauc
title: red_grape-angle-90-trial-2.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/ken5xd
title: red_grape-angle-90-trial-2.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/lenct0
title: cantaloupe-angle-0-trial-3.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/lh6x5j
title: honeydew-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/mffayl
title: broccoli-angle-90-trial-8.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/mhjpho
title: lettuce-angle-0-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/ncm8ks
title: kiwi-angle-0-trial-3.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/nml02s
title: apple-angle-90-trial-3.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/nsksrd
title: apple-angle-0-trial-2.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/nzc0e3
title: cauliflower-angle-90-trial-5.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/opzdd2
title: kiwi-angle-0-trial-8.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/ppokl6
title: kiwi-angle-0-trial-8.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/qropli
title: cantaloupe-angle-0-trial-2.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/swf8ns
title: banana-angle-0-trial-4.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/tohqlz
title: celery-angle-90-trial-4.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/tpqqi4
title: lettuce-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/v2wwta
title: grape-angle-0-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/vphyyp
title: spinach-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/vvrvao
title: carrot-angle-0-trial-4.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/x2mlv1
title: cantaloupe-angle-90-trial-5.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/xy42at
title: lettuce-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/y1ll46
title: tomato-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/z9jouq
title: honeydew-angle-0-trial-9.zip

description: :unav
DOI: 10.17632/g33wf9ddkb.1
title: E-cigarettes and Insulin resistance - Animal study data files.

description: Data files represent raw data for the animal study component of the "association between electronic cigarette exposure and insulin resistance" study.
DOI: 10.17632/nmjxsrz9j8.3
title: Heavy metals pollution accessed from transplanted oysters (Crassostrea rhizophorae) in the Potengi estuary, RN / Brazil

description: Concentrations of Cd, Cr, Cu, Pb, Ni and Zn were analyzed in total soft tissue from transplanted oysters between two sites in the Potengi estuary for almost six months to test the influence of environmental changes on accumulation and depuration of these metals. Native oysters were collected before and after transplantation to provide background for statistical analysis. The experimental design aims to test the following alternative hypotheses: H1- Significative difference on metal concentrations and biometrics between native oysters before transplantation and transplanted ones at the opposite site for 6 months. H2- Significative difference between heavy metal concentrations and biometrics achieved by transplanted oysters versus natives collected at the end of the experiment at the final site. H3- Significative correlation with biotic/abiotic variables. Description of spreadsheet columns: A: overall sample ordination. This numeration divides the dataset in 2 groups: the group named "Base Naval" containing 139 oysters, and "Quartel", with 157 oysters. The difference between sample sizes are due to mortality, loses during laboratorial procedures or data cleaning for outliers and doubtful data. B: categorical ordering of oysters within the same temporal sampling (collected at the same site and day). C: group name. For example, Nt0 is the group of natives collected before the transplantation. It was done on the July /17/2007. In this day, all oyster was taken to the lab, but only Nt0 were analyzed, While the others were carefully cleaned and housed in bag-shaped cages made of PVC mesh. These bags were taken back to the field and anchored at the opposite site. The following names in this column are referred to the chronological sampling order (T1, T2, T3 and so on) and the suffix (B or Q) indicates the location of the cage from which the oysters were taken. NtF stands for "final natives" and these oysters were collected at the same site where the last group from the transplant bag were removed. D: place where sample were collected, despite its s original site E: sampling date F: accumulated rainfall over the fourteen days preceding the sampling campaigns (mm/ per square meter) G: mean atmospheric temperature (Celsius degree) over the fourteen days preceding each sampling H: mean insolation over the fourteen days preceding each sampling (N per hour) I: mean wind intensity over the fourteen days preceding each sampling (meters per second) J: mean tide amplitude over the fourteen days preceding each sampling (meters) K: dry weight (grams) - Total soft tissue dry weight L: shell length (cm) - the largest length of the largest valve of each oyster M: Condition Index - C.I. = (soft tissue dry weight /shell volume) * 100. Results are expressed in (g/ cm³) N to S: Cd, Cr, Cu, Ni, Pb and Zn concentration from oyster's total soft tissue dry weight (µg/g-1) Ambiental variables were provided by CHM (Centro de Hidrografia da Marinha do Brasil)
DOI: 10.17632/r865j5mtw3.1
title: Could Stable Currency Really Stabilize the Cryptocurrency Markets? A Quantile Regression Approach Based on Tether USD

description: Our paper is the first attempt to exam the stable currency’s impact on the cryptocurrency market by using the the quantile ARDL-ECM (QARDL-ECM) and the quantile-in-quantile ARDL-ECM (QQARDL-ECM) models, we find that the USTD supply is positively related to cryptocurrency prices in the long run, while in the short-term, more USTD supply could support the cryptocurrency market when the market in the downturn period, but exacerbated price rises in the boom market. We focus on the USTD and 4 leading cryptocurrencies (Bitcoin, Litecoin, Ethereum, Ripple) that constitute 82.53% of the overall cryptocurrency market capitalization, the daily USTD supply and cryptocurrencies close price data are collected from the CoinMarketCap (https://coinmarketcap.com), the world’s most recognizable cryptocurrencies data provider. The sample period is from 2015-08-08 to 2019-08-07, with a total number of 1462 observations, since we get the price data for all the cryptocurrencies since 2015-08-08. Natural logarithmic series based on USTD supply and the cryptocurrencies’s closing prices are adopted to control for the possible exponential growth trend.
DOI: 10.5281/zenodo.3375543
title: On the Continuous Code Quality Outcomes of Continuous Integration: An Empirical Study

description: Here we provide all datasets that we rely on in our research questions and all violin plots for RQ3
DOI: 10.5281/zenodo.3375544
title: On the Continuous Code Quality Outcomes of Continuous Integration: An Empirical Study

description: Here we provide all datasets that we rely on in our research questions.
DOI: 10.7910/dvn/8a1xo3/0peldi
title: broccoli-angle-0-trial-5.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/1aw2d3
title: cauliflower-angle-90-trial-2.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/1lfmlu
title: kiwi-angle-0-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/2iuibn
title: pepper-angle-0-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/4gh4qj
title: carrot-angle-0-trial-4.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/4gnvns
title: strawberry-angle-90-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/8vyclv
title: red_grape-angle-0-trial-2.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/96qtp1
title: pepper-angle-90-trial-8.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/9haoc6
title: carrot-angle-0-trial-4.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/a8mgrw
title: tomato-angle-0-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/ahunin
title: pepper-angle-0-trial-3.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/art1gl
title: cantaloupe-angle-90-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/byp6dk
title: pepper-angle-0-trial-2.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/chwb0n
title: honeydew-angle-90-trial-9.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/cnxazt
title: carrot-angle-90-trial-1.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/dqqq68
title: strawberry-angle-90-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/em10rx
title: kiwi-angle-0-trial-3.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/gaobym
title: spinach-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/gnxbjx
title: kiwi-angle-0-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/lhze0a
title: honeydew-angle-0-trial-9.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/llhja5
title: lettuce-angle-0-trial-1.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/n5he2e
title: tomato-angle-0-trial-5.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/nbhbbq
title: broccoli-angle-0-trial-8.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/pqxhff
title: broccoli-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/qwc64n
title: tomato-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/r7dlu3
title: honeydew-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/uhlinb
title: carrot-angle-0-trial-1.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/urtbw3
title: kiwi-angle-0-trial-3.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/wdqskm
title: banana-angle-0-trial-4.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/xkdpuc
title: kale-angle-0-trial-2.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/xnfo4n
title: lettuce-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/xqwxm2
title: pineapple-angle-0-trial-1.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/yg7jnr
title: honeydew-angle-0-trial-9.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/zlehx3
title: red_grape-angle-90-trial-2.zip

description: :unav
DOI: 10.17632/2ngv2k493t.1
title: Age and composition of garnet orthogneiss, metapelite and gabbronorite from east Khondalbite belt, North China Craton

description: Table S1-S5 list SIMS zircon age, mineral major, trace elements, modal proportion and heat production of samples from east Khondalite belt, North China Craton.
DOI: 10.17632/g33wf9ddkb.2
title: E-cigarettes and Insulin resistance - Animal study data files.

description: Data files represent raw data for the animal study component of the "association between electronic cigarette exposure and insulin resistance" study.
DOI: 10.7910/dvn/8a1xo3/0stcba
title: cantaloupe-angle-0-trial-1.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/1c5tk1
title: apple-angle-90-trial-1.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/3at7pl
title: broccoli-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/3kkl0a
title: cauliflower-angle-0-trial-3.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/4yhf9i
title: strawberry-angle-90-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/50gioh
title: broccoli-angle-0-trial-8.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/5p1rnk
title: pepper-angle-0-trial-3.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/6d8zfq
title: kiwi-angle-0-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/7h3fzl
title: pepper-angle-0-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/7il44q
title: strawberry-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/aeldcc
title: strawberry-angle-0-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/azrah6
title: strawberry-angle-90-trial-3.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/bbat9t
title: tomato-angle-0-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/bvfc6e
title: honeydew-angle-90-trial-1.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/egrre2
title: strawberry-angle-0-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/jepudk
title: pineapple-angle-0-trial-5.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/l4opb6
title: lettuce-angle-0-trial-6.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/lvrpm8
title: spinach-angle-0-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/mdmaeu
title: broccoli-angle-90-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/mr4ht2
title: celery-angle-90-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/nqf3as
title: cauliflower-angle-90-trial-2.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/oq0hlb
title: broccoli-angle-0-trial-4.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/p9txpi
title: broccoli-angle-0-trial-5.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/plsygw
title: cauliflower-angle-0-trial-3.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/q4wyst
title: lettuce-angle-0-trial-1.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/qnasiz
title: cantaloupe-angle-90-trial-0.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/s0nuqa
title: broccoli-angle-0-trial-8.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/s8gzze
title: pepper-angle-0-trial-3.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/su8lbg
title: kale-angle-0-trial-6.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/t4kcn0
title: strawberry-angle-0-trial-5.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/v311mb
title: tomato-angle-0-trial-7.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/ypwihn
title: strawberry-angle-0-trial-4.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/yyjlis
title: broccoli-angle-0-trial-5.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/yylhwc
title: cauliflower-angle-0-trial-9.zip

description: :unav
DOI: 10.7910/dvn/8a1xo3/zf1d5x
title: pepper-angle-0-trial-2.zip

description: :unav
DOI: 10.17632/4tx9pb637r.1
title: Data for: Responses of marine phytoplankton communities to environmental changes: new insights from a niche classification scheme

description: A dataset that contains mean values of relative abundances of nine phytoplankton groups (iDino: dinoflagellates, iDiat: diatoms, iHapt_8: haptophytes_8, iHapt_6: haptophytes_6, iChlo: chlorophytes, iCryp: cryptophytes, iProc: Prochlorococcus, iSyne: Synechococcus, and iPras: prasinophytes) and three environmental factors (iTemp: temperature, Em: irradiance, and iNOx: nitrate) in the upper mixed layer of the South China Sea.
DOI: 10.6084/m9.figshare.23611527
title: TCGA correlation matrices (CSV tables)

description: TCGA correlation matrices (CSV tables) Co-expression analysis of transcriptomic data from cancer and healthy specimens reveals rewiring of proteasome genes and an interaction with the XPO1 gene across several tumour types
DOI: 10.6084/m9.figshare.23614797.v1
title: Unedited sequencing data.

description: Unedited sequencing data of 16s rRNA of bacteria found on face masks.
DOI: 10.6084/m9.figshare.23614797
title: Unedited sequencing data.

description: Unedited sequencing data of 16s rRNA of bacteria found on face masks.
DOI: 10.6084/m9.figshare.23177900
title: GenoSysFat smoltification - consensus atac peaks

description: Consensus set of ATAC-seq peaks representing open chromatin regions detected across smoltification at any week. Peaks were obtained from processing ATAC-seq read data through nf-core atacseq pipeline (v1.2.1).
DOI: 10.6084/m9.figshare.23177900.v1
title: GenoSysFat smoltification - consensus atac peaks

description: Consensus set of ATAC-seq peaks representing open chromatin regions detected across smoltification at any week. Peaks were obtained from processing ATAC-seq read data through nf-core atacseq pipeline (v1.2.1).
DOI: 10.6084/m9.figshare.23614239
title: M00222

description: This dataset contains GWAS summary file generated from sputum metagenomic data for COPD patients.
DOI: 10.6084/m9.figshare.23614239.v1
title: M00222

description: This dataset contains GWAS summary file generated from sputum metagenomic data for COPD patients.
DOI: 10.5281/zenodo.8105652
title: Hasil Manual Functional Test FRS API

description: Pengujian dilakukan untuk memastikan fungsionalitas dan kinerja API yang diimplementasikan. Hasil pengujian ini memberikan pemahaman umum tentang bagaimana API berperilaku dalam berbagai situasi
DOI: 10.5281/zenodo.8105651
title: Hasil Manual Functional Test FRS API

description: Pengujian dilakukan untuk memastikan fungsionalitas dan kinerja API yang diimplementasikan. Hasil pengujian ini memberikan pemahaman umum tentang bagaimana API berperilaku dalam berbagai situasi
DOI: 10.25828/afb2-pn20
title: Quarterly Labour Force Survey 2023, Quarter 1
DOI: 10.6084/m9.figshare.23177906
title: GenoSysFat smoltification - global TF binding changes

description: Global changes in TF binding scores across the different sampling weeks during smoltification. ATAC-seq reads were used for transcription factor (TF) footprinting in ATAC peaks, to find TFs that bound different amounts to TF binding sties (TFBS) across the different weeks of the experiment. TF foot printing was done with the TOBIAS program, and the output of global genome-wide changes in TF binding across weeks is used for this table.
DOI: 10.6084/m9.figshare.23177906.v1
title: GenoSysFat smoltification - global TF binding changes

description: Global changes in TF binding scores across the different sampling weeks during smoltification. ATAC-seq reads were used for transcription factor (TF) footprinting in ATAC peaks, to find TFs that bound different amounts to TF binding sties (TFBS) across the different weeks of the experiment. TF foot printing was done with the TOBIAS program, and the output of global genome-wide changes in TF binding across weeks is used for this table.
DOI: 10.6084/m9.figshare.23177921
title: GenoSysFat smoltification - TF binding changes to photoperiod and salinity

description: Transcription factors (TF) that have significant change in the number of bound TF binding sites (TFBS) in short vs long photoperiod weeks, and fresh vs seawater weeks, across the smoltification experiment. ATAC-seq reads were used for transcription factor (TF) footprinting in ATAC peaks, to find TFs that bound different amounts to TF binding sties (TFBS) across the different weeks of the experiment. TF foot printing was done with the TOBIAS program, and the output of global genome-wide changes in TF binding across weeks is used for this table.
DOI: 10.6084/m9.figshare.23177921.v1
title: GenoSysFat smoltification - TF binding changes to photoperiod and salinity

description: Transcription factors (TF) that have significant change in the number of bound TF binding sites (TFBS) in short vs long photoperiod weeks, and fresh vs seawater weeks, across the smoltification experiment. ATAC-seq reads were used for transcription factor (TF) footprinting in ATAC peaks, to find TFs that bound different amounts to TF binding sties (TFBS) across the different weeks of the experiment. TF foot printing was done with the TOBIAS program, and the output of global genome-wide changes in TF binding across weeks is used for this table.
DOI: 10.6084/m9.figshare.23599389.v1
title: <strong>Proteomics study on the mechanism of arsenic hepatotoxicity and the protective mechanism of Dictyophora polysaccharide against arsenic hepatotoxicity</strong>

description: Arsenic is a highly toxic environmental toxicant and a known human carcinogen. Long-term exposure to arsenic can cause liver injury. Dictyophora polysaccharide (DIP) is a biologically active natural compound found in the edible plant Dictyostelium. In this study, Sprague-Dawley (SD) rat model of As toxicity was established using a feeding method, followed by DIP intervention in rats with As-induced liver injury. The molecular mechanism of arsenic toxicity to rat liver and the protective effect of DIP were investigated by proteomic studies. The results showed that 172, 328 and 191 differentially expressed proteins (DEPs) were identified between the arsenic-exposed rats versus control rats (As/Ctrl), DIP-intervened rats versus arsenic-exposed rats (DIP+As/As), and DIP-intervened rats versus control rats (DIP+As /Ctrl), respectively, respectively. Among them, the expression of 90 DEPs in the As/Ctrl group were reversed by DIP treatment. Arsenic exposure causes dysregulation of metabolic pathways, mitochondria, oxidative stress, and apoptosis-related proteins in rat liver. However, DIP treatment reversed or restored the expression levels of these proteins, thereby attenuating the liver injury induced by arsenic exposure in rats. The results provide a new insight into for mechanism of liver injury induced by arsenic exposure and the intervention of DIP in arsenic poisoning.
DOI: 10.6084/m9.figshare.23177924
title: GenoSysFat smoltification - TFBS binding enrichment in gene expression clusters

description: Enrichment of transcription factor (TF) binding patterns within expression clusters. Clusters of DEGs showing different expression trends across the smoltification experiment were comapred with TF binding patterns (the weeks a TF s bound) at TF binding sites (TFBS) proximal to the DEGs. Each type of TF was tested if binding patterns were enriched at TFBS for genes in a given expression cluster. Fisher’s exact test results are given in the table for all binding patterns and TF types, per cluster, as odds ratios and significance score.