cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7764953
title: Top 4 models Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin

description: Top 4 models per each simulation strategy of docking from the manuscript.
DOI: 10.3886/icpsr24218.v2
title: Federal Justice Statistics Program: Offenders Admitted to Prison, 2006
title: Version 2

description: The data contain records of sentenced offenders committed to the custody of the Bureau of Prisons (BOP) during fiscal year 2006. The data include commitments of United States District Court, violators of conditions of release (e.g., parole, probation, or supervised release violators), offenders convicted in other courts (e.g., military or District of Columbia courts), and persons admitted to prison as material witnesses or for purposes of treatment, examination, or transfer to another authority. These data include variables that describe the offender, such as age, race, citizenship, as well as variables that describe the sentences and expected prison terms. The data file contains original variables from the Bureau of Prisons' SENTRY database, as well as "SAF" variables that denote subsets of the data. These SAF variables are related to statistics reported in the Compendium of Federal Justice Statistics, Tables 7.9-7.16. Variables containing identifying information (e.g., name, Social Security Number) were replaced with blanks, and the day portions of date fields were also sanitized in order to protect the identities of individuals. These data are part of a series designed by the Urban Institute (Washington, DC) and the Bureau of Justice Statistics. Data and documentation were prepared by the Urban Institute.
description: Datasets: DS1: Federal Justice Statistics Program: Offenders Admitted to Prison, 2006
description: Offenders in the custody of the United States Bureau of Prisons during fiscal year 2006.
DOI: 10.3886/icpsr24218
title: Federal Justice Statistics Program: Offenders Admitted to Prison, 2006
title: Archival Version

description: The data contain records of sentenced offenders committed to the custody of the Bureau of Prisons (BOP) during fiscal year 2006. The data include commitments of United States District Court, violators of conditions of release (e.g., parole, probation, or supervised release violators), offenders convicted in other courts (e.g., military or District of Columbia courts), and persons admitted to prison as material witnesses or for purposes of treatment, examination, or transfer to another authority. These data include variables that describe the offender, such as age, race, citizenship, as well as variables that describe the sentences and expected prison terms. The data file contains original variables from the Bureau of Prisons' SENTRY database, as well as "SAF" variables that denote subsets of the data. These SAF variables are related to statistics reported in the Compendium of Federal Justice Statistics, Tables 7.9-7.16. Variables containing identifying information (e.g., name, Social Security Number) were replaced with blanks, and the day portions of date fields were also sanitized in order to protect the identities of individuals. These data are part of a series designed by the Urban Institute (Washington, DC) and the Bureau of Justice Statistics. Data and documentation were prepared by the Urban Institute.
description: Datasets: DS1: Federal Justice Statistics Program: Offenders Admitted to Prison, 2006
description: Offenders in the custody of the United States Bureau of Prisons during fiscal year 2006.
DOI: 10.3886/icpsr34324.v1
title: Federal Justice Statistics Program: Defendants in Federal Criminal Cases Filed in District Court, 2010
title: Version 1

description: The data contain records of defendants in criminal cases filed in United States District Court during fiscal year 2010. The data were constructed from the Administrative Office of the United States District Courts' (AOUSC) criminal file. Defendants in criminal cases may be either individuals or corporations. There is one record for each defendant in each case filed. Included in the records are data from court proceedings and offense codes for up to five offenses charged at the time the case was filed. (The most serious charge at termination may differ from the most serious charge at case filing, due to plea bargaining or action of the judge or jury.) In a case with multiple charges against the defendant, a "most serious" offense charge is determined by a hierarchy of offenses based on statutory maximum penalties associated with the charges. The data file contains variables from the original AOUSC files as well as additional analysis variables, or "SAF" variables, that denote subsets of the data. These SAF variables are related to statistics reported in the Compendium of Federal Justice Statistics, Tables 4.1-4.5 and 5.1-5.6. Variables containing information (e.g., name, Social Security number) were replaced with blanks, and the day portions of date fields were also sanitized in order to protect the identities of individuals. These data are part of a series designed by the Urban Institute (Washington, DC) and the Bureau of Justice Statistics. Data and documentation were prepared by the Urban Institute.
description: Datasets: DS1: Federal Justice Statistics Program: Defendants in Federal Criminal Cases Filed in District Court, 2010
description: Criminal cases filed in United States District Court during fiscal year 2010. Smallest Geographic Unit: United States
DOI: 10.3886/icpsr36297.v1
title: Deaths in Custody Reporting Program: Non-standardized Jail Data, 2005
title: Version 1

description: The Deaths in Custody Reporting Program (DCRP) is an annual data collection conducted by the Bureau of Justice Statistics (BJS). The DCRP began in 2000 under the Death in Custody Reporting Act of 2000 (P.L. 106-297). It is the only national statistical collection that obtains detailed information about deaths in adult correctional facilities. The DCRP collects data on persons dying in state prisons, local jails and in the process of arrest. Each collection is a separate subcollection, but each is under the umbrella of the DCRP collection. The DCRP collects inmate death records from each of the nation's 50 state prison systems and approximately 2,800 local jail jurisdictions. In addition, this program collects records of all deaths occurring during the process of arrest. Data are collected directly from state and local law enforcement agencies. Death records include information on decedent personal characteristics (age, race or Hispanic origin, and sex), decedent criminal background (legal status, offense type, and time served), and the death itself (date, time, location, and cause of death, as well as information on the autopsy and medical treatment provided for any illness or disease). This data collection represents a single year of DCRP Jails data. The variable names and coding, while similar to other years, have not been standardized across years. The concatenated multi-year versions of the DCRP Jails population data have been edited to correct outliers and other data anomalies. Researchers are encouraged to use the concatenated multi-year data for final jail population data.
description: Datasets: DS1: Deaths in Custody Reporting Program: Non-standardized Jail Data, 2005
description: Deaths of individuals in jails. Smallest Geographic Unit: county
description: paper and pencil interview (PAPI)
DOI: 10.3886/icpsr36297
title: Deaths in Custody Reporting Program: Non-standardized Jail Data, 2005
title: Archival Version

description: The Deaths in Custody Reporting Program (DCRP) is an annual data collection conducted by the Bureau of Justice Statistics (BJS). The DCRP began in 2000 under the Death in Custody Reporting Act of 2000 (P.L. 106-297). It is the only national statistical collection that obtains detailed information about deaths in adult correctional facilities. The DCRP collects data on persons dying in state prisons, local jails and in the process of arrest. Each collection is a separate subcollection, but each is under the umbrella of the DCRP collection. The DCRP collects inmate death records from each of the nation's 50 state prison systems and approximately 2,800 local jail jurisdictions. In addition, this program collects records of all deaths occurring during the process of arrest. Data are collected directly from state and local law enforcement agencies. Death records include information on decedent personal characteristics (age, race or Hispanic origin, and sex), decedent criminal background (legal status, offense type, and time served), and the death itself (date, time, location, and cause of death, as well as information on the autopsy and medical treatment provided for any illness or disease). This data collection represents a single year of DCRP Jails data. The variable names and coding, while similar to other years, have not been standardized across years. The concatenated multi-year versions of the DCRP Jails population data have been edited to correct outliers and other data anomalies. Researchers are encouraged to use the concatenated multi-year data for final jail population data.
description: Datasets: DS1: Deaths in Custody Reporting Program: Non-standardized Jail Data, 2005
description: Deaths of individuals in jails. Smallest Geographic Unit: county
description: paper and pencil interview (PAPI)
DOI: 10.5281/zenodo.7768413
title: phylloecus_xanthostoma_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7768412
title: phylloecus_xanthostoma_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.3886/icpsr25002.v6
title: Federal Court Cases: Integrated Data Base, 2008
title: Version 6

description: The purpose of this data collection is to provide an official public record of the business of the federal courts. The data originate from district and appellate court offices throughout the United States. Information was obtained at two points in the life of a case: filing and termination. The termination data contain information on both filing and terminations, while the pending data contain only filing information.
description: Datasets: DS0: Study-Level Files DS1: Appellate Terminations Data with Docket Numbers Blanked DS2: Appellate Terminations Data with Docket Numbers Containing Original Values DS3: Civil Terminations Data with Docket Numbers, PLT and DEF Blanked DS4: Civil Terminations Data with Docket Numbers, PLT and DEF Containing Original Values DS5: Criminal Data with Docket Numbers Blanked DS6: Criminal Data with Docket Numbers Containing Original Values
description: All federal court cases in the United States in 2008. Smallest Geographic Unit: county
description: Starting with the year 2001, each year of data for Federal Court Cases is released by ICPSR as a separate study number. Federal Court Cases data for the years 1970-2000 can be found in FEDERAL COURT CASES: INTEGRATED DATA BASE, 1970-2000 (ICPSR 8429).
DOI: 10.5281/zenodo.7768418
title: Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin

description: The Papain-like protease (PLpro) is a domain of a multi-functional, non-structural protein 3 of coronaviruses. PLpro cleaves viral polyproteins and posttranslational conjugates with poly-ubiquitin and protective ISG15, composed of two ubiquitin-like (UBL) domains. Across coronaviruses, PLpro showed divergent selectivity for recognition and cleavage of posttranslational conjugates despite sequence conservation. We show that SARS-CoV-2 PLpro binds human ISG15 and K48-linked di-ubiquitin (K48-Ub<sub>2</sub>) with nanomolar affinity and detect alternate weaker-binding modes. Crystal structures of untethered PLpro complexes with ISG15 and K48-Ub<sub>2</sub> combined with solution NMR and cross-linking mass spectrometry revealed how the two domains of ISG15 or K48-Ub<sub>2</sub> are differently utilized in interactions with PLpro. Analysis of protein interface energetics predicted differential binding stabilities of the two UBL/Ub domains that were validated experimentally. We emphasize how substrate recognition can be tuned to cleave specifically ISG15 or K48-Ub<sub>2</sub> modifications while retaining capacity to cleave mono-Ub conjugates. These results highlight alternative druggable surfaces that would inhibit PLpro function.
DOI: 10.5281/zenodo.7768417
title: Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin

description: The Papain-like protease (PLpro) is a domain of a multi-functional, non-structural protein 3 of coronaviruses. PLpro cleaves viral polyproteins and posttranslational conjugates with poly-ubiquitin and protective ISG15, composed of two ubiquitin-like (UBL) domains. Across coronaviruses, PLpro showed divergent selectivity for recognition and cleavage of posttranslational conjugates despite sequence conservation. We show that SARS-CoV-2 PLpro binds human ISG15 and K48-linked di-ubiquitin (K48-Ub<sub>2</sub>) with nanomolar affinity and detect alternate weaker-binding modes. Crystal structures of untethered PLpro complexes with ISG15 and K48-Ub<sub>2</sub> combined with solution NMR and cross-linking mass spectrometry revealed how the two domains of ISG15 or K48-Ub<sub>2</sub> are differently utilized in interactions with PLpro. Analysis of protein interface energetics predicted differential binding stabilities of the two UBL/Ub domains that were validated experimentally. We emphasize how substrate recognition can be tuned to cleave specifically ISG15 or K48-Ub<sub>2</sub> modifications while retaining capacity to cleave mono-Ub conjugates. These results highlight alternative druggable surfaces that would inhibit PLpro function.
DOI: 10.3886/icpsr34881.v2
title: Federal Court Cases: Integrated Data Base, 2012
title: Version 2

description: The purpose of this data collection is to provide an official public record of the business of the federal courts. The data originate from district and appellate court offices throughout the United States. Information was obtained at two points in the life of appellate and civil cases: filing and termination. The termination data (archived in this data collection) contain information on both filing and terminations, while the pending data (archived as a separate data collection) contain only filing information on the most recent pending cases. The unit of analysis for the appellate and civil terminations data is the case. This collection also contains data on criminal cases in federal courts. However, the unit of analysis for the criminal data is the defendant, and a defendant can be included in several cases.
description: Datasets: DS0: Study-Level Files DS1: Appellate Terminations Data with Docket Numbers Blanked DS2: Appellate Terminations Data with Docket Numbers Containing Original Values DS3: Civil Terminations Data with Docket Numbers, PLT and DEF Blanked DS4: Civil Terminations Data with Docket Numbers, PLT and DEF Containing Original Values DS5: Criminal Data with Docket Numbers Blanked DS6: Criminal Data with Docket Numbers Containing Original Values
description: All federal court cases in the United States in 2012. Smallest Geographic Unit: county
description: Starting with the year 2001, each year of data for Federal Court Cases Integrated Data Base is released by ICPSR as a separate study number. Data for the years 1970-2000 can be found in FEDERAL COURT CASES: INTEGRATED DATA BASE, 1970-2000 (ICPSR 8429).Starting with year 2008, the appellate pending and civil pending data are archived as a separate data collection.
DOI: 10.3886/icpsr29424.v2
title: Federal Justice Statistics Program: Suspects in Federal Criminal Matters Concluded, 2008 [United States]
title: Version 2

description: The data contain records of suspects in federal criminal matters concluded by United States attorneys or United States magistrates during fiscal year 2008. The data were constructed from the Executive Office for United States Attorneys (EOUSA) Central System file. Records include suspects in criminal matters, and are limited to suspects whose matters were not declined immediately by the United States attorneys. According to the EOUSA, the United States attorneys conduct approximately 95 percent of the prosecutions handled by the Department of Justice. The Central System data contain variables from the original EOUSA files as well as additional analysis variables, or "SAF" variables, that denote subsets of the data. These SAF variables are related to statistics reported in the Compendium of Federal Justice Statistics, Tables 1.2-1.5. Variables containing identifying information (e.g., name, Social Security Number) were replaced with blanks, and the day portions of date fields were also sanitized in order to protect the identities of individuals. These data are part of a series designed by the Urban Institute (Washington, DC) and the Bureau of Justice Statistics. Data and documentation were prepared by the Urban Institute.
description: Datasets: DS1: Federal Justice Statistics Program: Suspects in Federal Criminal Matters Concluded, 2008 [United States]
description: Suspects in federal criminal matters concluded by United States attorneys or United States magistrates during fiscal year 2008.
DOI: 10.3886/icpsr29403.v2
title: Federal Justice Statistics Program: Defendants in Federal Criminal Cases in District Court -- Pending, 2008 [United States]
title: Version 2

description: The data contain records of defendants in criminal cases filed in United States District Court before or during fiscal year 2008 and still pending as of year-end. The data were constructed from the Administrative Office of the United States District Courts' (AOUSC) criminal file. Defendants in criminal cases may be either individuals or corporations. There is one record for each defendant in each case filed. Included in the records are data from court proceedings and offense codes for up to five offenses charged at the time the case was filed. (The most serious charge at termination may differ from the most serious charge at case filing, due to plea bargaining or action of the judge or jury.) In a case with multiple charges against the defendant, a "most serious" offense charge is determined by a hierarchy of offenses based on statutory maximum penalties associated with the charges. The data file contains variables from the original AOUSC files as well as additional analysis variables, or "SAF" variables, that denote subsets of the data. These SAF variables are related to statistics reported in the Compendium of Federal Justice Statistics, Tables 4.1-4.5 and 5.1-5.6. Variables containing identifying information (e.g., name, Social Security number) were replaced with blanks, and the day portions of date fields were also sanitized in order to protect the identities of individuals. These data are part of a series designed by the Urban Institute (Washington, DC) and the Bureau of Justice Statistics. Data and documentation were prepared by the Urban Institute.
description: Datasets: DS1: Federal Justice Statistics Program: Defendants in Federal Criminal Cases in District Court -- Pending, 2008 [United States]
description: Criminal cases filed in United States District Court during fiscal year 2008 and still pending as of year-end.
DOI: 10.3886/icpsr24213.v2
title: Federal Justice Statistics Program: Charges Filed Against Defendants in Criminal Cases in District Court, 2006 [United States]
title: Version 2

description: The data contain records of charges filed against defendants whose cases were filed by United States attorneys in United States district court during fiscal year 2006. The data are charge-level records, and more than one charge may be filed against a single defendant. The data were constructed from the Executive Office for United States Attorneys (EOUSA) Central Charge file. The charge-level data may be linked to defendant-level data (extracted from the EOUSA Central System file) through the CS_SEQ variable, and it should be noted that some defendants may not have any charges other than the lead charge appearing on the defendant-level record. The Central Charge and Central System data contain variables from the original EOUSA files as well as additional analysis variables, or "SAF" variables, that denote subsets of the data. These SAF variables are related to statistics reported in the Compendium of Federal Justice Statistics. Variables containing identifying information (e.g., name, Social Security Number) were replaced with blanks, and the day portions of date fields were also sanitized in order to protect the identities of individuals. These data are part of a series designed by the Urban Institute (Washington, DC) and the Bureau of Justice Statistics. Data and documentation were prepared by the Urban Institute.
description: Datasets: DS1: Federal Justice Statistics Program: Charges Filed Against Defendants in Criminal Cases in District Court, 2006 [United States]
description: Charges filed against defendants in United States district court during fiscal year 2006.
DOI: 10.3886/icpsr36295.v1
title: Deaths in Custody Reporting Program: Non-standardized Jail Data, 2003
title: Version 1

description: The Deaths in Custody Reporting Program (DCRP) is an annual data collection conducted by the Bureau of Justice Statistics (BJS). The DCRP began in 2000 under the Death in Custody Reporting Act of 2000 (P.L. 106-297). It is the only national statistical collection that obtains detailed information about deaths in adult correctional facilities. The DCRP collects data on persons dying in state prisons, local jails and in the process of arrest. Each collection is a separate subcollection, but each is under the umbrella of the DCRP collection. The DCRP collects inmate death records from each of the nation's 50 state prison systems and approximately 2,800 local jail jurisdictions. In addition, this program collects records of all deaths occurring during the process of arrest. Data are collected directly from state and local law enforcement agencies. Death records include information on decedent personal characteristics (age, race or Hispanic origin, and sex), decedent criminal background (legal status, offense type, and time served), and the death itself (date, time, location, and cause of death, as well as information on the autopsy and medical treatment provided for any illness or disease). This data collection represents a single year of DCRP Jails data. The variable names and coding, while similar to other years, have not been standardized across years. The concatenated multi-year versions of the DCRP Jails population data have been edited to correct outliers and other data anomalies. Researchers are encouraged to use the concatenated multi-year data for final jail population data.
description: Datasets: DS1: Deaths in Custody Reporting Program: Non-standardized Jail Data, 2003
description: Deaths of individuals in jails. Smallest Geographic Unit: county
description: paper and pencil interview (PAPI)