cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3692908_d1.v1
title: Additional file 1: of Levofloxacin or Clarithromycin-based quadruple regimens: what is the best alternative as first-line treatment for Helicobacter pylori eradication in a country with high resistance rates for both antibiotics?

description: Supplementary material. Set of data from all patients included in the study (SPSS file). (XLS 105 kb)
DOI: 10.6084/m9.figshare.c.3692908_d1
title: Additional file 1: of Levofloxacin or Clarithromycin-based quadruple regimens: what is the best alternative as first-line treatment for Helicobacter pylori eradication in a country with high resistance rates for both antibiotics?

description: Supplementary material. Set of data from all patients included in the study (SPSS file). (XLS 105 kb)
DOI: 10.6084/m9.figshare.c.3692884_d4.v1
title: Additional file 2: of Variant discovery in the sheep milk transcriptome using RNA sequencing

description: Title of data: Genes in QTL regions containing relevant functional variants. Description of data: Worksheet providing the list of genes within QTL regions, which contain variants with functional interest. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3692884_d4
title: Additional file 2: of Variant discovery in the sheep milk transcriptome using RNA sequencing

description: Title of data: Genes in QTL regions containing relevant functional variants. Description of data: Worksheet providing the list of genes within QTL regions, which contain variants with functional interest. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3692911_d1.v1
title: MOESM1 of Detecting differential gene expression in blastocysts following pronuclear transfer

description: Additional file 1. Annotated R code. This script contains the R code for all the simulations described in the manuscript, along with detailed annotations that explain each step of the analyses.
DOI: 10.6084/m9.figshare.c.3692911_d1
title: MOESM1 of Detecting differential gene expression in blastocysts following pronuclear transfer

description: Additional file 1. Annotated R code. This script contains the R code for all the simulations described in the manuscript, along with detailed annotations that explain each step of the analyses.
DOI: 10.6084/m9.figshare.c.3692959_d1
title: Additional file 1: Table S1. of Highly predictive SNP markers for efficient selection of the wheat leaf rust resistance gene Lr16

description: PCR primers for DNA markers used in the study. Table S2. Lr16 haplotype panel sorted by Lr16 status, country of origin, marketing class, and cultivar/line name. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3692962_d1
title: Additional file 2: Table S1. of Transcriptomic signatures shaped by cell proportions shed light on comparative developmental biology

description: Genes differentially expressed in ED14.5–18.0 molars. An excel file with data for genes differentially expressed under various conditions in our study. Sheet 1: content and legend. Sheet 2: data for genes which are significantly differentially expressed in at least one out of three comparisons done with DEseq2 (eight stages taken as replicates; eight stages taken as replicates, taking time into account as a quantitative variable; one out of the seven pairs of consecutive stages taken as replicates): log ratio, P value, mean basemean. (XLSX 422 kb)
DOI: 10.6084/m9.figshare.c.3692953_d3.v1
title: Additional files 5: of Effect of myeloid differentiation primary response gene 88 on expression profiles of genes during the development and progression of Helicobacter-induced gastric cancer

description: Text file: Sample Info file listing name and ID of each mouse used in the analysis. (TXT 533 bytes)
DOI: 10.6084/m9.figshare.c.3692953_d3
title: Additional files 5: of Effect of myeloid differentiation primary response gene 88 on expression profiles of genes during the development and progression of Helicobacter-induced gastric cancer

description: Text file: Sample Info file listing name and ID of each mouse used in the analysis. (TXT 533 bytes)
DOI: 10.6084/m9.figshare.c.3693016_d3.v1
title: MOESM4 of Decoupling the downstream effects of germline nuclear RNAi reveals that H3K9me3 is dispensable for heritable RNAi and the maintenance of endogenous siRNA-mediated transcriptional silencing in Caenorhabditis elegans

description: Additional file 4: Table S3. RPKM values of 1-kb windows for all ChIP-seq libraries used in this study. GRTS loci, GRH loci, SET-32-dependent H3K9me3, MET-2 SET-25-dependent H3K9me3, and MET-2 SET-25;SET-32-dependent H3K9me3 are indicated.
DOI: 10.6084/m9.figshare.c.3693016_d3
title: MOESM4 of Decoupling the downstream effects of germline nuclear RNAi reveals that H3K9me3 is dispensable for heritable RNAi and the maintenance of endogenous siRNA-mediated transcriptional silencing in Caenorhabditis elegans

description: Additional file 4: Table S3. RPKM values of 1-kb windows for all ChIP-seq libraries used in this study. GRTS loci, GRH loci, SET-32-dependent H3K9me3, MET-2 SET-25-dependent H3K9me3, and MET-2 SET-25;SET-32-dependent H3K9me3 are indicated.
DOI: 10.6084/m9.figshare.c.3693016_d4.v1
title: MOESM10 of Decoupling the downstream effects of germline nuclear RNAi reveals that H3K9me3 is dispensable for heritable RNAi and the maintenance of endogenous siRNA-mediated transcriptional silencing in Caenorhabditis elegans

description: Additional file 10: Table S4. RPKM values of all annotated genes for all mRNA-seq libraries used in this study. GRTS loci, GRH loci, and H3K9me3-enriched genes are indicated.
DOI: 10.6084/m9.figshare.c.3693016_d4
title: MOESM10 of Decoupling the downstream effects of germline nuclear RNAi reveals that H3K9me3 is dispensable for heritable RNAi and the maintenance of endogenous siRNA-mediated transcriptional silencing in Caenorhabditis elegans

description: Additional file 10: Table S4. RPKM values of all annotated genes for all mRNA-seq libraries used in this study. GRTS loci, GRH loci, and H3K9me3-enriched genes are indicated.
DOI: 10.15468/dl.3dhbfz
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bollmannia communis Ginsburg, 1942",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 174 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038313-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3693016_d6.v1
title: MOESM11 of Decoupling the downstream effects of germline nuclear RNAi reveals that H3K9me3 is dispensable for heritable RNAi and the maintenance of endogenous siRNA-mediated transcriptional silencing in Caenorhabditis elegans

description: Additional file 11: Table S5. RPKM values of 1-kb windows for all pre-mRNA-seq libraries used in this study. GRTS loci, GRH loci, SET-32-dependent H3K9me3, MET-2 SET-25-dependent H3K9me3, and MET-2 SET-25;SET-32-dependent H3K9me3 are indicated.
DOI: 10.6084/m9.figshare.c.3693016_d6
title: MOESM11 of Decoupling the downstream effects of germline nuclear RNAi reveals that H3K9me3 is dispensable for heritable RNAi and the maintenance of endogenous siRNA-mediated transcriptional silencing in Caenorhabditis elegans

description: Additional file 11: Table S5. RPKM values of 1-kb windows for all pre-mRNA-seq libraries used in this study. GRTS loci, GRH loci, SET-32-dependent H3K9me3, MET-2 SET-25-dependent H3K9me3, and MET-2 SET-25;SET-32-dependent H3K9me3 are indicated.
DOI: 10.6084/m9.figshare.c.3693016_d8.v1
title: MOESM9 of Decoupling the downstream effects of germline nuclear RNAi reveals that H3K9me3 is dispensable for heritable RNAi and the maintenance of endogenous siRNA-mediated transcriptional silencing in Caenorhabditis elegans

description: Additional file 9: Table S2. Oligonucleotides and other sequences used in this study.
DOI: 10.6084/m9.figshare.c.3693031_d2.v1
title: Additional file 4: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

description: Catalogue of Trichoderma effector candidates. Complete list of the possible effector coding genes from T. virens, T. atroviride and T. reesei that we obtained from our pipeline. (XLSX 21ย�kb)
DOI: 10.6084/m9.figshare.c.3693016_d8
title: MOESM9 of Decoupling the downstream effects of germline nuclear RNAi reveals that H3K9me3 is dispensable for heritable RNAi and the maintenance of endogenous siRNA-mediated transcriptional silencing in Caenorhabditis elegans

description: Additional file 9: Table S2. Oligonucleotides and other sequences used in this study.
DOI: 10.6084/m9.figshare.c.3693031_d3.v1
title: Additional file 2: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

description: Datasets. Lists of proteins that constitute the negative, positive and evaluation datasets used for the comparison of the programs that predict extracellular proteins. (XLSX 20ย�kb)
DOI: 10.6084/m9.figshare.c.3693031_d2
title: Additional file 4: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

description: Catalogue of Trichoderma effector candidates. Complete list of the possible effector coding genes from T. virens, T. atroviride and T. reesei that we obtained from our pipeline. (XLSX 21ย�kb)
DOI: 10.5281/zenodo.14511295
title: PEDAGOG KASBINI EGALLASHNING NAZARIY METODOLOGIK ASOSLARI
DOI: 10.5281/zenodo.14511296
title: PEDAGOG KASBINI EGALLASHNING NAZARIY METODOLOGIK ASOSLARI
DOI: 10.6084/m9.figshare.c.3694339_d1.v1
title: Additional file 1 of Making life difficult for Clostridium difficile: augmenting the pathogenâ  s metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

description: Carbon source usage, carboxylic acids secreted, and essential amino acids in icdf834 as compared with iMLTC806cdf and literature. (PDF 41 kb)
DOI: 10.6084/m9.figshare.c.3694339_d1
title: Additional file 1 of Making life difficult for Clostridium difficile: augmenting the pathogenâ  s metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

description: Carbon source usage, carboxylic acids secreted, and essential amino acids in icdf834 as compared with iMLTC806cdf and literature. (PDF 41 kb)
DOI: 10.6084/m9.figshare.c.3694339_d2.v1
title: Additional file 3 of Making life difficult for Clostridium difficile: augmenting the pathogenâ  s metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

description: Gene essentiality analysis of icdf834 and iMLTC806cdf. (PDF 49 kb)
DOI: 10.6084/m9.figshare.c.3694339_d2
title: Additional file 3 of Making life difficult for Clostridium difficile: augmenting the pathogenâ  s metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

description: Gene essentiality analysis of icdf834 and iMLTC806cdf. (PDF 49 kb)
DOI: 10.6084/m9.figshare.c.3694360_d1
title: Additional file 2: of Evolution of toll-like receptors in the context of terrestrial ungulates and cetaceans diversification

description: Selected species and accession numbers of all TLR sequences that were used in the analysis. An excel file containing the list of species and the associated RefSeq accession number of the sequence for each TLR. (XLS 13 kb)
DOI: 10.6084/m9.figshare.c.3694360_d1.v1
title: Additional file 2: of Evolution of toll-like receptors in the context of terrestrial ungulates and cetaceans diversification

description: Selected species and accession numbers of all TLR sequences that were used in the analysis. An excel file containing the list of species and the associated RefSeq accession number of the sequence for each TLR. (XLS 13 kb)
DOI: 10.6084/m9.figshare.c.3694402_d2.v1
title: Additional file 8: of House spider genome uncovers evolutionary shifts in the diversity and expression of black widow venom proteins associated with extreme toxicity

description: Manual adjustments to Augustus predicted house spider latrotoxin sequences. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3694399_d2
title: Additional file 4: of Accuracy of magnetic resonance studies in the detection of chondral and labral lesions in femoroacetabular impingement: systematic review and meta-analysis

description: Meta-disc file for labral lesions in cMRI. Statistical file from Meta-disc program showing true positives, true negatives, false positives and false negatives results of conventional magnetic resonance imaging in detecting labral lesions. (DSC 80Â kb)
DOI: 10.6084/m9.figshare.c.3694399_d3.v1
title: Additional file 1: of Accuracy of magnetic resonance studies in the detection of chondral and labral lesions in femoroacetabular impingement: systematic review and meta-analysis

description: Meta-disc file for chondral lesions in dMRA. Statistical file from Meta-disc program showing true positives, true negatives, false positives and false negatives results of direct magnetic resonance arthrography in detecting chondral lesions. (DSC 80Â kb)
DOI: 10.6084/m9.figshare.c.3694402_d2
title: Additional file 8: of House spider genome uncovers evolutionary shifts in the diversity and expression of black widow venom proteins associated with extreme toxicity

description: Manual adjustments to Augustus predicted house spider latrotoxin sequences. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3694384_d6.v1
title: Additional file 2: Table S1. of RNF40 regulates gene expression in an epigenetic context-dependent manner

description: The gene symbol of selected gene groups in this study including upregulated genes, downregulated genes, H3K27me3 significantly decreased genes, and EZH2 targeted genes. Genes with broad H3K4me3 peaks, sharp H3K4me3 peaks, and random control genes in MEF. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.c.3694399_d3
title: Additional file 1: of Accuracy of magnetic resonance studies in the detection of chondral and labral lesions in femoroacetabular impingement: systematic review and meta-analysis

description: Meta-disc file for chondral lesions in dMRA. Statistical file from Meta-disc program showing true positives, true negatives, false positives and false negatives results of direct magnetic resonance arthrography in detecting chondral lesions. (DSC 80Â kb)
DOI: 10.6084/m9.figshare.c.3694408_d1.v1
title: Additional file 2: Table S2. of Transcriptional analysis of defense mechanisms in upland tetraploid switchgrass to greenbugs

description: Gene identities and primers used for RNA-Seq validation (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3694384_d6
title: Additional file 2: Table S1. of RNF40 regulates gene expression in an epigenetic context-dependent manner

description: The gene symbol of selected gene groups in this study including upregulated genes, downregulated genes, H3K27me3 significantly decreased genes, and EZH2 targeted genes. Genes with broad H3K4me3 peaks, sharp H3K4me3 peaks, and random control genes in MEF. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.c.3694402_d3.v1
title: Additional file 6: of House spider genome uncovers evolutionary shifts in the diversity and expression of black widow venom proteins associated with extreme toxicity

description: Members of a novel gene family from house spider including highly venom gland expressed sequences. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3694408_d1
title: Additional file 2: Table S2. of Transcriptional analysis of defense mechanisms in upland tetraploid switchgrass to greenbugs

description: Gene identities and primers used for RNA-Seq validation (XLSX 11Â kb)
DOI: 10.15468/dl.9582cn
title: Occurrence Download

description: A dataset containing 2377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Boops boops (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 2377 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038314-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3694399_d4.v1
title: Additional file 3: of Accuracy of magnetic resonance studies in the detection of chondral and labral lesions in femoroacetabular impingement: systematic review and meta-analysis

description: Meta-disc file for chondral lesions in cMRI. Statistical file from Meta-disc program showing true positives, true negatives, false positives and false negatives results of conventional magnetic resonance imaging in detecting chondral lesions. (DSC 80Â kb)
DOI: 10.6084/m9.figshare.c.3694402_d3
title: Additional file 6: of House spider genome uncovers evolutionary shifts in the diversity and expression of black widow venom proteins associated with extreme toxicity

description: Members of a novel gene family from house spider including highly venom gland expressed sequences. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3694399_d4
title: Additional file 3: of Accuracy of magnetic resonance studies in the detection of chondral and labral lesions in femoroacetabular impingement: systematic review and meta-analysis

description: Meta-disc file for chondral lesions in cMRI. Statistical file from Meta-disc program showing true positives, true negatives, false positives and false negatives results of conventional magnetic resonance imaging in detecting chondral lesions. (DSC 80Â kb)
DOI: 10.6084/m9.figshare.c.3694414_d1.v1
title: Additional file 1: of Roles of preoperative C-reactive protein are more relevant in buccal cancer than other subsites

description: Clinical information of 343 OSCC patients. (SAV 100 kb)
DOI: 10.6084/m9.figshare.c.3696250_d1.v1
title: Additional file 1: of Lower blood pressure and risk of cisplatin nephrotoxicity: a retrospective cohort study

description: Original data of 442Â cycles of cisplatin chemotherapy in 182 patients. (XLSX 88 kb)
DOI: 10.6084/m9.figshare.c.3696247_d1
title: Additional file 3: of The genome landscape of indigenous African cattle

description: Summary of XP-CLR analysis. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3696250_d1
title: Additional file 1: of Lower blood pressure and risk of cisplatin nephrotoxicity: a retrospective cohort study

description: Original data of 442Â cycles of cisplatin chemotherapy in 182 patients. (XLSX 88 kb)
DOI: 10.6084/m9.figshare.c.3696256_d2.v1
title: Additional file 3: of Distribution based nearest neighbor imputation for truncated high dimensional data with applications to pre-clinical and clinical metabolomics studies

description: R script illustrating providing a working example. (R 4 kb)
DOI: 10.6084/m9.figshare.c.3696256_d2
title: Additional file 3: of Distribution based nearest neighbor imputation for truncated high dimensional data with applications to pre-clinical and clinical metabolomics studies

description: R script illustrating providing a working example. (R 4 kb)
DOI: 10.6084/m9.figshare.c.3696256_d3
title: Additional file 4: of Distribution based nearest neighbor imputation for truncated high dimensional data with applications to pre-clinical and clinical metabolomics studies

description: R code for the kNN imputation functions. (R 13 kb)
DOI: 10.6084/m9.figshare.c.3696256_d3.v1
title: Additional file 4: of Distribution based nearest neighbor imputation for truncated high dimensional data with applications to pre-clinical and clinical metabolomics studies

description: R code for the kNN imputation functions. (R 13 kb)
DOI: 10.6084/m9.figshare.c.3696256_d4.v1
title: Additional file 5: of Distribution based nearest neighbor imputation for truncated high dimensional data with applications to pre-clinical and clinical metabolomics studies

description: R code for the Simulation datasets. (R 2 kb)
DOI: 10.6084/m9.figshare.c.3696292_d3.v1
title: Additional file 2: of Stress-responsive pathways and small RNA changes distinguish variable developmental phenotypes caused by MSH1 loss

description: Spreadsheet of differentially expressed genes in msh1 mutants. Only concordant results (with Cuffdiff2 chosen as output) are included. (XLSX 940Â kb)
DOI: 10.15468/dl.htagu4
title: Occurrence Download

description: A dataset containing 1111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Boreogadus saida (Lepechin, 1774)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1111 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038317-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3696316_d1.v1
title: Additional file 2: Table S2. of Molecular and genetic alterations associated with therapy resistance and relapse of acute myeloid leukemia

description: CNAs and UPDs recurrently acquired (Table S2A) or lost (Table S2B) at relapse of AML. (XLSX 25Â kb)
DOI: 10.15468/dl.8xx5yy
title: Occurrence Download

description: A dataset containing 1158167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2022-2023"
 ]
}

 The dataset includes 1158167 records from 365 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038310-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3696316_d1
title: Additional file 2: Table S2. of Molecular and genetic alterations associated with therapy resistance and relapse of acute myeloid leukemia

description: CNAs and UPDs recurrently acquired (Table S2A) or lost (Table S2B) at relapse of AML. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.c.3696316_d2.v1
title: Additional file 1: Table S1. of Molecular and genetic alterations associated with therapy resistance and relapse of acute myeloid leukemia

description: Cytogenetic aberrations recurrently acquired (Table S1A) or lost (Table S1B) at relapse of AML. (XLSX 25Â kb)
DOI: 10.15468/dl.sqhrxe
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Living Specimen)",
 "TaxonKey is Ovulinia azaleae F.A.Weiss",
 "Year 2015-2024"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038318-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3696316_d2
title: Additional file 1: Table S1. of Molecular and genetic alterations associated with therapy resistance and relapse of acute myeloid leukemia

description: Cytogenetic aberrations recurrently acquired (Table S1A) or lost (Table S1B) at relapse of AML. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.c.3696316_d3.v1
title: Additional file 3: Table S3. of Molecular and genetic alterations associated with therapy resistance and relapse of acute myeloid leukemia

description: Non-synonymous mutations recurrently acquired (Table S3A) or lost (Table S3B) at relapse of AML as determined by next generation sequencing based methods. (XLSX 22Â kb)