cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.mn3e85
title: Occurrence Download

description: A dataset containing 493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus mykiss",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 493 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017341-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9qyb5p
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eichhornia crassipes",
 "Country is Zimbabwe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017340-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gzsb8
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hibiscus syriacus",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 55 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017342-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57903/uj/pnwsth
title: Climate change beliefs, emotions and pro-environmental behaviors among adults: The role of core personality traits and the time perspective - raw data

description: The file includes all raw data, the analyses of which are presented in the manuscript entitled "Climate change beliefs, emotions and pro-environmental behaviors among adults: The role of core personality traits and the time perspective" submitted to PLOS ONE
DOI: 10.15468/dl.artzgj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Solenopsis richteri, Xylosandrus crassiusculus, Ehrharta calycina, Schizachyrium scoparium, Rosa bracteata, Wasmannia auropunctata, Turanoclytus namaganensis, Megaplatypus mutatus, Tetropium gracilicorne, Cortaderia jubata, Xylosandrus crassiusculus, Andropogon virginicus, Anoplophora glabripennis, Cardiospermum grandiflorum, Polistes chinensis, Polygraphus proximus, Agrilus anxius, Passiflora tarminiana, Agrilus auroguttatus, Agrilus planipennis, Solenopsis invicta, Hedychium coronarium, Aizoon pubescens, Lymantria mathura, Enaphalodes rufulus, Hakea sericea, Pulvinaria hydrangeae, Triadica sebifera, Hylobitelus xiaoi, Solanum seaforthianum, Saperda candida, Rugulopteryx okamurae, Macrosiphoniella sanborni, Xylosandrus mutilatus, Prosopis juliflora, Dendrolimus sibiricus, Melaleuca quinquenervia, Platypus quercivorus, Sirex ermak, Agrilus planipennis, Corymbia citriodora, Toumeyella parvicornis, Clematis terniflora, Baccharis spicata, Ludwigia peruviana, Solanum marginatum)",
 "Year is one of (2020, 2021, 2022, 2023, 2024)",
 "DecimalLatitude is greater than or equal to 47.3024876979",
 "DecimalLatitude is less than or equal to 54.983104153",
 "DecimalLongitude is greater than or equal to 5.98865807458",
 "DecimalLongitude is less than or equal to 15.0169958839",
 "Year is not null",
 "HasCoordinate is TRUE",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017344-250711103210423/datasets/export for details.
DOI: 10.15468/dl.g6gdux
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Solenopsis richteri, Xylosandrus crassiusculus, Ehrharta calycina, Schizachyrium scoparium, Rosa bracteata, Wasmannia auropunctata, Turanoclytus namaganensis, Megaplatypus mutatus, Tetropium gracilicorne, Cortaderia jubata, Xylosandrus crassiusculus, Andropogon virginicus, Anoplophora glabripennis, Cardiospermum grandiflorum, Polistes chinensis, Polygraphus proximus, Agrilus anxius, Passiflora tarminiana, Agrilus auroguttatus, Agrilus planipennis, Solenopsis invicta, Hedychium coronarium, Aizoon pubescens, Lymantria mathura, Enaphalodes rufulus, Hakea sericea, Pulvinaria hydrangeae, Triadica sebifera, Hylobitelus xiaoi, Solanum seaforthianum, Saperda candida, Rugulopteryx okamurae, Macrosiphoniella sanborni, Xylosandrus mutilatus, Prosopis juliflora, Dendrolimus sibiricus, Melaleuca quinquenervia, Platypus quercivorus, Sirex ermak, Agrilus planipennis, Corymbia citriodora, Toumeyella parvicornis, Clematis terniflora, Baccharis spicata, Ludwigia peruviana, Solanum marginatum)",
 "Year is one of (2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024, 2025)",
 "DecimalLatitude is greater than or equal to 44.95782311925129",
 "DecimalLatitude is less than or equal to 58.30331634439415",
 "DecimalLongitude is greater than or equal to -10.001896207643075",
 "DecimalLongitude is less than or equal to 30.31691447027875",
 "Year is not null",
 "HasCoordinate is TRUE",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017345-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ta92gx
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus mykiss",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 129 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017349-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.su6pqd
title: Occurrence Download

description: A dataset containing 8226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eleocharis palustris",
 "Geometry POLYGON((-8.00174339329464 54.1998526673513, 0.202120938926891 54.1998526673513, 0.202120938926891 61.2628565887411, -8.00174339329464 61.2628565887411, -8.00174339329464 54.1998526673513))",
 "CoordinateUncertaintyInMeters is 0,101",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8226 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017348-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdppdh
title: Occurrence Download

description: A dataset containing 15678 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus brevifolius"
 ]
}

 The dataset includes 15678 records from 485 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017346-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aszef2
title: Occurrence Download

description: A dataset containing 4824 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equus caballus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4824 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017350-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14504762
title: A deep learning method for predicting interactions for intrinsically disordered regions of proteins

description: Note to user

The files have been organized according to the directory structure that is needed for running the scripts.

Disobind training set includes the train, development, and in-distribution test set.

 

This dataset contains the following:

disobind/

Zipped GitHub file.

prose and ProstT5 GitHub repo used.

database/





Combined_PDBs.tar.gz: a zipped file containing all PDB structures.




Mapped_PDBs.tar.gz: a zipped file containing SIFTS mapping for all PDB entries.




PDB_api.tar.gz: a zipped file containing entry and entity-level information from PDB API as JSON files.




idppi: input files to run Disobind on IDPPI test set.




other_methods: input for running AIUPred and predictions for DeepDISOBind and MORFchibi.


Misc: input for running Disobind for DOR and DDR complexes (Case studies section in paper).



v_19:






AF2_preds: AlphaFold-multimer predictions for OOD test set.




AF3_preds: AlphaFold3 predictions for OOD test set.




Target_bcmap_test_v_19.h5: target contact maps for OOD test set.




Target_bcmap_train_v_19.h5: target contact maps for Disobind training set.




Uniprot_seq.json: JSON file containing UniProt sequences for all UniProt accessions included in the dataset.




prot_1-2_test_v_19.csv: entry IDs for all merged binary complexes in the OOD test set.




prot_1-2_train_v_19.csv: entry IDs for all merged binary complexes in the Disobind training set.




T5/






global-None: contains ProtT5-global embeddings for the train, development, and in-distribution test set.




local-None: contains ProtT5-local embeddings for the train, development, and in-distribution test set.




train_fasta_global-None_v_19.fasta: FASTA file used as input for creating ProtT5-global embeddings for train, development, and in-distribution test set.




train_fasta_local-None_v_19.fasta: FASTA file used as input for creating ProtT5-local embeddings train, development, and in-distribution test set.
DOI: 10.5281/zenodo.15873859
title: A deep learning method for predicting interactions for intrinsically disordered regions of proteins

description: Note to user

The files have been organized according to the directory structure that is needed for running the scripts.

Disobind training set includes the train, development, and in-distribution test set.

 

This dataset contains the following:

disobind/

Zipped GitHub file.

prose and ProstT5 GitHub repo used.

database/





Combined_PDBs.tar.gz: a zipped file containing all PDB structures.




Mapped_PDBs.tar.gz: a zipped file containing SIFTS mapping for all PDB entries.




PDB_api.tar.gz: a zipped file containing entry and entity-level information from PDB API as JSON files.




idppi: input files to run Disobind on IDPPI test set.




other_methods: input for running AIUPred and predictions for DeepDISOBind and MORFchibi.


Misc: input for running Disobind for DOR and DDR complexes (Case studies section in paper).



v_19:






AF2_preds: AlphaFold-multimer predictions for OOD test set.




AF3_preds: AlphaFold3 predictions for OOD test set.




Target_bcmap_test_v_19.h5: target contact maps for OOD test set.




Target_bcmap_train_v_19.h5: target contact maps for Disobind training set.




Uniprot_seq.json: JSON file containing UniProt sequences for all UniProt accessions included in the dataset.




prot_1-2_test_v_19.csv: entry IDs for all merged binary complexes in the OOD test set.




prot_1-2_train_v_19.csv: entry IDs for all merged binary complexes in the Disobind training set.




T5/






global-None: contains ProtT5-global embeddings for the train, development, and in-distribution test set.




local-None: contains ProtT5-local embeddings for the train, development, and in-distribution test set.




train_fasta_global-None_v_19.fasta: FASTA file used as input for creating ProtT5-global embeddings for train, development, and in-distribution test set.




train_fasta_local-None_v_19.fasta: FASTA file used as input for creating ProtT5-local embeddings train, development, and in-distribution test set.
DOI: 10.15468/dl.a363u3
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hibiscus syriacus",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017351-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucwya6
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Living Specimen, Human Observation)",
 "Country is one of (Spain, Italy)",
 "TaxonKey is Misgurnus anguillicaudatus"
 ]
}

 The dataset includes 246 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017353-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3mdm2
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ABA3211"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017358-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ggbp5
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spryginia afghanica"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017359-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8h9kxq
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Pachydactylus waterbergensis"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017357-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15493/dea.mims.04452023
title: Raw temperature data for long-term observations of bottom temperatures at Xai-Xai, Mozambique (April 2006 - July 2007)

description: Bottom temperatures
description: Here we present raw temperatures from Underwater Temperature Recorders (UTRs) located at a depth of 18m off Xai-Xai, Mozambique (25.1646°S 33.6781°E), along the east coast of Southern Africa, between 23 April 2006 and 10 July 2007. Note that the data that falls outside of these dates is not from the deployment. At selected sites around Southern Africa, UTRs have been used to obtain long-term records of bottom temperature in the nearshore environment, at depths ranging from 2m to 34m. Note that for some deployments, two UTRs were deployed to simultaneously record bottom temperatures.
description: The raw data was collected using Underwater Temperature Recorder(s) (UTR) that was configured to sample every 60 minutes. The subsurface-mounted, Underwater Temperature Recorder(s) (UTR) was deployed at a depth of 18m off Xai-Xai, Mozambique (25.1646°S; 33.6781°E), along the east coast of Southern Africa. The instrument measured hourly temperature readings between 23 April 2006 and 10 July 2007.
DOI: 10.15468/dl.d23zuc
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dovyalis verrucosa",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 35 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017360-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/80ef3824-3f5d-4e45-8794-3b8791efbd13
title: Electric Vehicle Charging Session Data of Large Office Parking Lot

description: The dataset corresponds to the a.s.r. living lab of the SmoothEMS met GridShield project. The living lab is an office parking lot located in Utrecht, the Netherlands, that hosts EV charging infrastructure for employees and visitors. All datapoints describe electric vehicle charging sessions recorded on-site. The data was collected between August 25th, 2020 and October 2nd, 2024. At the end of the measurement period, about 300 charging points were installed on-site.
DOI: 10.4121/80ef3824-3f5d-4e45-8794-3b8791efbd13.v2
title: Electric Vehicle Charging Session Data of Large Office Parking Lot

description: The dataset corresponds to the a.s.r. living lab of the SmoothEMS met GridShield project. The living lab is an office parking lot located in Utrecht, the Netherlands, that hosts EV charging infrastructure for employees and visitors. All datapoints describe electric vehicle charging sessions recorded on-site. The data was collected between August 25th, 2020 and October 2nd, 2024. At the end of the measurement period, about 300 charging points were installed on-site.
DOI: 10.15468/dl.rhthg8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia nilotica",
 "Country is Antigua and Barbuda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017363-250711103210423/datasets/export for details.
DOI: 10.15468/dl.afydqy
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia nilotica",
 "Country is Sri Lanka",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017364-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axeyg8
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tropidocarpum capparideum"
 ]
}

 The dataset includes 136 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017362-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxndpp
title: Occurrence Download

description: A dataset containing 7305556 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "Country is one of (Portugal, Russian Federation, Austria, Norway, Finland, Germany, Netherlands, United Kingdom of Great Britain and Northern Ireland, Denmark)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Continent derived from coordinates, Coordinate rounded)",
 "OccurrenceStatus is Present",
 "TaxonKey is Poaceae",
 "Year 2000-2025"
 ]
}

 The dataset includes 7305556 records from 984 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017331-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1380464.10fu
title: SH1380464.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1380466.10fu
title: SH1380466.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1380468.10fu
title: SH1380468.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.