cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pfgcwh
title: Occurrence Download

description: A dataset containing 88408842 species occurrences available in GBIF matching the query:
{
 "and" : [
 "KingdomKey is Plantae",
 "Country is France",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Human Observation, Machine Observation)"
 ]
}

 The dataset includes 88408842 records from 6733 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002359-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/mh2-h5j-nah
title: †Cyrtina Davidson, 1859

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x5n-2v0-fqp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0my-kys-j90
title: †Textularia subconica Franke, 1928

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vfj-8rx-8t3
title: †Lepidorbitoides minor (Schlumberger, 1902)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/84k-ewl-dn3
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.14609979
title: Drivers of phenotypic variation along a Late Pleistocene range expansion route

description: Abstract

Aim: Understanding how interindividual variation within populations drives the evolution of biodiversity patterns is a major challenge in ecology and evolutionary biology. By reshuffling species distribution in space and time, Pleistocene climatic oscillations shaped the structure of biodiversity. While the genetic legacy left by these processes has been widely investigated, their effects on phenotypic diversity remain largely unexplored. Here, we investigated whether Pleistocene range expansion affected the geographic patterns of phenotypic variation in the Tyrrhenian tree frog Hyla sarda.

Location: Sardinia and Corsica Islands.

Taxon: Amphibia.

Methods: We collected tree frogs from four distinct geographic areas along the past expansion route, controlling for variation in altitude, local habitat effects, population demographic factors, and bioclimatic differences, allowing us to minimise confounding effects on the phenotypic trait studied.  Then, we scored intraspecific variation in two personality traits, two performance traits, and morphological traits likely involved in the dispersal process.

Results: Tree frogs from Corsica were more prudent in a novel environment, they had significantly larger body sizes, longer limbs, and wider head sizes and displayed stronger take-off and adhesion performances than individuals from the source area in Sardinia.

Main Conclusion: These results suggest a non-random spatial sorting of the intraspecific variation in multiple phenotypic traits during the range expansion phase. In turn, they also suggest that population differentiation in phenotypic trait associations might be a legacy of past biogeographic dynamics, identifying an overlooked driver of current patterns of intraspecific variation in phenotypic integration and opening intriguing evolutionary scenarios on the processes shaping the phenotypic architecture of animal populations. Future studies should investigate the genomic architecture underlying the phenotypic patterns that emerged and explore the potential role of trait selection via spatial sorting and plasticity-led evolution in shaping these patterns.
DOI: 10.3535/fv6-d78-833
title: Anatomites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tc3-qbv-yv8
title: Diaphus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.15288104
title: Drivers of phenotypic variation along a Late Pleistocene range expansion route

description: Abstract

Aim: Understanding how interindividual variation within populations drives the evolution of biodiversity patterns is a major challenge in ecology and evolutionary biology. By reshuffling species distribution in space and time, Pleistocene climatic oscillations shaped the structure of biodiversity. While the genetic legacy left by these processes has been widely investigated, their effects on phenotypic diversity remain largely unexplored. Here, we investigated whether Pleistocene range expansion affected the geographic patterns of phenotypic variation in the Tyrrhenian tree frog Hyla sarda.

Location: Sardinia and Corsica Islands.

Taxon: Amphibia.

Methods: We collected tree frogs from four distinct geographic areas along the past expansion route, controlling for variation in altitude, local habitat effects, population demographic factors, and bioclimatic differences, allowing us to minimise confounding effects on the phenotypic trait studied.  Then, we scored intraspecific variation in two personality traits, two performance traits, and morphological traits likely involved in the dispersal process.

Results: Tree frogs from Corsica were more prudent in a novel environment, they had significantly larger body sizes, longer limbs, and wider head sizes and displayed stronger take-off and adhesion performances than individuals from the source area in Sardinia.

Main Conclusion: These results suggest a non-random spatial sorting of the intraspecific variation in multiple phenotypic traits during the range expansion phase. In turn, they also suggest that population differentiation in phenotypic trait associations might be a legacy of past biogeographic dynamics, identifying an overlooked driver of current patterns of intraspecific variation in phenotypic integration and opening intriguing evolutionary scenarios on the processes shaping the phenotypic architecture of animal populations. Future studies should investigate the genomic architecture underlying the phenotypic patterns that emerged and explore the potential role of trait selection via spatial sorting and plasticity-led evolution in shaping these patterns.
DOI: 10.3535/3kx-zkb-9ny
title: Clupea

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zd4-sy3-b9k
title: Knipowitschia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jsr-ymc-ehl
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b9k-w9v-9xs
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/47d-br6-bxp
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qkx-q0h-hgm
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7kq-tgq-bqg
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/csp-chy-4n7
title: Hyperammina laevigata Wright, 1891

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j9w-re7-95x
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t92-ydy-wpe
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lhz-ljm-70c
title: †Siderolites calcitrapoides Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qv1-7bn-tnr
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0q3-xbx-m7f
title: Paralegoceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m0f-8nn-bf8
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c8p-xpc-2z1
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fhr-clm-gl2
title: Anatomites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sbf-75g-mn4
title: †Pseudoparrella limburgensis Visser, 1951

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2x0-l46-21h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xcf-d6k-9s6
title: Cladiscites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2yg-1a0-sh3
title: †Pararotalia tuberculifera (Reuss, 1862)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/drr-5fd-f04
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/09w-1ve-94w
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kva-aqf-85e
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7h1-hst-gc3
title: Echinoidea Schumacher, 1817

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/typ-5ns-hk4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/keq-ws3-1q9
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ahm-0p1-e66
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ejz-p1a-n6n
title: †Favorites Tschigova, 1977

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/400-52b-e8g
title: †Schizophoria King, 1850

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wab-6q2-kvf
title: †Retzia King, 1850

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j80-vhb-5nb
title: †Pararotalia tuberculifera (Reuss, 1862)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pjl-sa3-1ah
title: Steinmannites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8qk-vx3-bev
title: Merluccius

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/klj-3dq-2gz
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l70-srl-xqa
title: Trisopterus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5zw-3al-mwx
title: Lopha Röding, 1798

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nl0-rpt-kt4
title: Phoca Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qcg-mz8-1z6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15156/bio/sh1395083.10fu
title: SH1395083.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395085.10fu
title: SH1395085.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/ccdc.csd.cc2g42g5
title: CCDC 2268036: Experimental Crystal Structure Determination

description: Related Article: Kenji Takada, Tetsuya Kambe, Taira Kinoshita, Akiyoshi Kuzume, Takane Imaoka, Kimihisa Yamamoto|2025|Langmuir|28|18788|doi:10.1021/acs.langmuir.5c02104
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g42h6
title: CCDC 2268037: Experimental Crystal Structure Determination

description: Related Article: Kenji Takada, Tetsuya Kambe, Taira Kinoshita, Akiyoshi Kuzume, Takane Imaoka, Kimihisa Yamamoto|2025|Langmuir|28|18788|doi:10.1021/acs.langmuir.5c02104
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15156/bio/sh1395087.10fu
title: SH1395087.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/ccdc.csd.cc2gfkyf
title: CCDC 2277165: Experimental Crystal Structure Determination

description: Related Article: Jiaolong Meng, Hongbin Yang, Chengliang Li, Haiyang Song, Ning Xia, Xuefeng Jiang|2025|Angew.Chem.,Int.Ed.|64|e202515595|doi:10.1002/anie.202515595
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15156/bio/sh1395088.10fu
title: SH1395088.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395089.10fu
title: SH1395089.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395090.10fu
title: SH1395090.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/ccdc.csd.cc2gnxnq
title: CCDC 2284224: Experimental Crystal Structure Determination

description: Related Article: Koppadi Syam Venkata Kishore, Chandrakant Wasekar, Prashant G. Borkar, Mangesh E. Shelke, Sudhakar Bansod, Sunil Kumar Nechipadappu, P. Sathya Shanker, Tulshiram L. Dadmal|2025|Adv.Synth.Catal.|367|e202401513|doi:10.1002/adsc.202401513
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15156/bio/sh1395093.10fu
title: SH1395093.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/ccdc.csd.cc2gz790
title: CCDC 2293172: Experimental Crystal Structure Determination

description: Related Article: Zi-Zheng Liu, Xiao-Hui Wen, Hong-Chang Fan, Jun Xuan, Hongping Zhou, Fei Li|2025|Org.Lett.|||doi:10.1021/acs.orglett.5c04539
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.