cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3xwcxm
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "StateProvince is one of (ZHEJIANG PROV., ZheJiang, Zhejiang, Zhejiang (Chekiang), Zhejiang (Chekiang) Province, Zhejiang (浙江省), Zhejiang Prov., Zhejiang Province)",
 "TaxonKey is Ciconia boyciana Swinhoe, 1873",
 "Year 2020-2024"
 ]
}

 The dataset includes 165 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002532-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r59wvs
title: Occurrence Download

description: A dataset containing 6800 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is FPWC Bluebird Monitoring - Powered by Anecdata.org"
 ]
}

 The dataset includes 6800 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002533-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5m9yj6
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Aves Argentinas / Asociación Ornitológica del Plata - Colección de registros observacionales de aves silvestres argentinas - Lista Narosky: familia Corvidae"
 ]
}

 The dataset includes 38 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002534-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5hpmcu
title: Occurrence Download

description: A dataset containing 30042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Centaurea stoebe L., Reynoutria japonica Houtt., Heracleum mantegazzianum Sommier & Levier, Impatiens glandulifera Royle, Lythrum salicaria L., Vincetoxicum rossicum (Kleopow) Barbar.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Canada"
 ]
}

 The dataset includes 30042 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002535-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.42mu9j
title: Occurrence Download

description: A dataset containing 14043 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biodiverskripsi: Biodiversity Theses Database"
 ]
}

 The dataset includes 14043 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002536-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3emhe
title: Occurrence Download

description: A dataset containing 250 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Expansion zone survey of pine marten (Martes martes) distribution in Scotland, 2012-2013"
 ]
}

 The dataset includes 250 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002537-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2kyym3
title: Occurrence Download

description: A dataset containing 40338 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-122.38259 37.3721,-122.36423 37.19905,-122.24663 37.06563,-122.18729 37.01303,-122.08368 36.96831,-121.93847 36.98268,-121.65794 36.92604,-121.65367 37.25411,-121.96139 37.22612,-122.17583 37.37379,-122.38259 37.3721))",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 40338 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002538-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/jhga-gy40
title: NGC4258-Ha
DOI: 10.15468/dl.v42bd9
title: Occurrence Download

description: A dataset containing 30042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Centaurea stoebe L., Reynoutria japonica Houtt., Heracleum mantegazzianum Sommier & Levier, Impatiens glandulifera Royle, Lythrum salicaria L., Vincetoxicum rossicum (Kleopow) Barbar.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Canada"
 ]
}

 The dataset includes 30042 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002540-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u8maaq
title: Occurrence Download

description: A dataset containing 6371 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Long-term monitoring of the relative density in the red fox (Vulpes vulpes) with track counts in Doñana National Park 2007-2022"
 ]
}

 The dataset includes 6371 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002541-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62r6rp
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Procapra przewalskii (Büchner, 1891)"
 ]
}

 The dataset includes 27 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002542-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11063964
title: CARA: Benchmarking Compound Activity Prediction for Real-World Drug Discovery Applications

description: Identifying active compounds for target proteins is fundamental in early drug discovery. Recently, data-driven computational methods have demonstrated promising potential in predicting compound activities. However, there lacks a well-designed benchmark to comprehensively evaluate these methods from a practical perspective. To fill this gap, we propose a benchmark, named CARA.Through carefully distinguishing assay types, designing train-test splitting schemes and selecting evaluation metrics, CARA can consider the biased distribution of current real-world compound activity data and avoid overestimation of model performances. We observed that current models can make successful predictions for certain proportions of assays, while the performances varied across different assays. In addition, evaluation of several few-shot training strategies demonstrated different performances related to task types. Overall, we provide a high-quality dataset for developing and evaluating compound activity prediction models, and the analyses in this work may inspire better applications of data-driven models in drug discovery.
description: Update [v1.0.1]

Removed four assays (i.e., CHEMBL1613842_Potency, CHEMBL1614515_Potency, CHEMBL1614171_Potency, CHEMBL1614217_Potency) in VS_All_support.json and VS_All_query.json to keep consistent with our original paper. These four assays may contain small-molecule compounds with different pharmacological profiles such as activators and inhibitors. After correction, there were 96 assays in support, query, and test splits of VS_All task.
DOI: 10.5281/zenodo.11063965
title: CARA: Benchmarking Compound Activity Prediction for Real-World Drug Discovery Applications

description: Identifying active compounds for target proteins is fundamental in early drug discovery. Recently, data-driven computational methods have demonstrated promising potential in predicting compound activities. However, there lacks a well-designed benchmark to comprehensively evaluate these methods from a practical perspective. To fill this gap, we propose a benchmark, named CARA.Through carefully distinguishing assay types, designing train-test splitting schemes and selecting evaluation metrics, CARA can consider the biased distribution of current real-world compound activity data and avoid overestimation of model performances. We observed that current models can make successful predictions for certain proportions of assays, while the performances varied across different assays. In addition, evaluation of several few-shot training strategies demonstrated different performances related to task types. Overall, we provide a high-quality dataset for developing and evaluating compound activity prediction models, and the analyses in this work may inspire better applications of data-driven models in drug discovery.
DOI: 10.5281/zenodo.14740896
title: CARA: Benchmarking Compound Activity Prediction for Real-World Drug Discovery Applications

description: Identifying active compounds for target proteins is fundamental in early drug discovery. Recently, data-driven computational methods have demonstrated promising potential in predicting compound activities. However, there lacks a well-designed benchmark to comprehensively evaluate these methods from a practical perspective. To fill this gap, we propose a benchmark, named CARA.Through carefully distinguishing assay types, designing train-test splitting schemes and selecting evaluation metrics, CARA can consider the biased distribution of current real-world compound activity data and avoid overestimation of model performances. We observed that current models can make successful predictions for certain proportions of assays, while the performances varied across different assays. In addition, evaluation of several few-shot training strategies demonstrated different performances related to task types. Overall, we provide a high-quality dataset for developing and evaluating compound activity prediction models, and the analyses in this work may inspire better applications of data-driven models in drug discovery.
description: Update [v1.0.1]

Removed four assays (i.e., CHEMBL1613842_Potency, CHEMBL1614515_Potency, CHEMBL1614171_Potency, CHEMBL1614217_Potency) in VS_All_support.json and VS_All_query.json to keep consistent with our original paper. These four assays may contain small-molecule compounds with different pharmacological profiles such as activators and inhibitors. After correction, there were 96 assays in support, query, and test splits of VS_All task.
DOI: 10.15468/dl.rjb67s
title: Occurrence Download

description: A dataset containing 277 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Farmland Bird Survey North East Wales, 2008"
 ]
}

 The dataset includes 277 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002546-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxsvvs
title: Occurrence Download

description: A dataset containing 437 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaphurus davidianus Milne-Edwards, 1866"
 ]
}

 The dataset includes 437 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002545-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfqkrt
title: Occurrence Download

description: A dataset containing 24676 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Segetal flora of Italy"
 ]
}

 The dataset includes 24676 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002544-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwc4vp
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "StateProvince is one of (ZHEJIANG PROV., ZheJiang, Zhejiang, Zhejiang (Chekiang), Zhejiang (Chekiang) Province, Zhejiang (浙江省), Zhejiang Prov., Zhejiang Province)",
 "TaxonKey is Nipponia nippon (Temminck, 1835)",
 "Year 2020-2024"
 ]
}

 The dataset includes 33 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002547-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28082750
title: Cross-cultural adaptation and validation of the 9-item Indonesian HIV/AIDS Stigma Scale (InHASS-9) in the general population

description: This project aims to conduct cross-cultural adaptation and validation of the 9-item Indonesian HIV/AIDS Stigma Scale (InHASS-9) for the general population. It involves the translation, cultural adaptation, and evaluation of the scale's reliability and validity in the Indonesian context, focusing on measuring stigma towards People Living with HIV/AIDS (PLWHA). The project also analyzes stigma differences across various sociodemographic backgrounds to enhance understanding of the social challenges faced by PLWHA in Indonesia.
DOI: 10.6084/m9.figshare.28082750.v5
title: Cross-cultural adaptation and validation of the 9-item Indonesian HIV/AIDS Stigma Scale (InHASS-9) in the general population

description: This project aims to conduct cross-cultural adaptation and validation of the 9-item Indonesian HIV/AIDS Stigma Scale (InHASS-9) for the general population. It involves the translation, cultural adaptation, and evaluation of the scale's reliability and validity in the Indonesian context, focusing on measuring stigma towards People Living with HIV/AIDS (PLWHA). The project also analyzes stigma differences across various sociodemographic backgrounds to enhance understanding of the social challenges faced by PLWHA in Indonesia.
DOI: 10.15468/dl.ae3cpw
title: Occurrence Download

description: A dataset containing 837844 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "TaxonKey is Macropodidae",
 "Year 2010-2020"
 ]
}

 The dataset includes 837844 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002543-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gb5aqv
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elaphurus davidianus Milne-Edwards, 1866",
 "Year 2000-2025"
 ]
}

 The dataset includes 148 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002548-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7xmkq
title: Occurrence Download

description: A dataset containing 1355029 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-10.22014 40.98251,-7.1381 40.99623,-7.1381 42.83115,-10.29446 42.85858,-10.22014 40.98251))",
 "TaxonKey is Plantae",
 "Year 1995-2023"
 ]
}

 The dataset includes 1355029 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253160-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkswdy
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-74.23628 5.64818,-74.42456 5.63926,-74.43352 4.3621,-72.85559 4.38891,-72.85559 5.63926,-74.23628 5.64818))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oxypogon guerinii (Boissonneau, 1840)"
 ]
}

 The dataset includes 292 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172018-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6shjv
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.39036 5.94674,-74.96703 5.56858,-75.00635 3.93598,-74.18066 3.59595,-72.71275 4.18437,-72.47684 5.93371,-74.39036 5.94674))",
 "HasGeospatialIssue is false",
 "TaxonKey is Espeletia barclayana Cuatrec."
 ]
}

 The dataset includes 214 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172001-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fm3ff6
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helictotrichon tianschanicum (Roshev.) Henrard"
 ]
}

 The dataset includes 31 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239901-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8qz2h
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tiphia J.C.Fabricius, 1775",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 99 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0210951-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrpw8q
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.33.24_1",
 "TaxonKey is Magnolia acuminata (L.) L."
 ]
}

 The dataset includes 52 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286697-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3j4a4k
title: Occurrence Download

description: A dataset containing 6081 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Acinonyx jubatus (Schreber, 1775)"
 ]
}

 The dataset includes 6081 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172009-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r3bxt6
title: Occurrence Download

description: A dataset containing 4197 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Material sample, Fossil, Specimen, Occurrence evidence, Living Specimen)",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Atta cephalotes (Linnaeus, 1758)"
 ]
}

 The dataset includes 4197 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286702-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7z3pw7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 {
 "or" : [
 "Geometry POLYGON((-73.72715 5.09578,-73.36714 5.09578,-73.36714 5.40457,-73.72715 5.40457,-73.72715 5.09578))",
 "Geometry POLYGON((-73.71825 5.05729,-73.30588 5.05729,-73.30588 5.41626,-73.71825 5.41626,-73.71825 5.05729))"
 ]
 },
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172014-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcwxn9
title: Occurrence Download

description: A dataset containing 17943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heliomaster constantii (Delattre, 1843)",
 "Year 1000-2022"
 ]
}

 The dataset includes 17943 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262207-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.885fbk
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scorzonera sericeolanata (Bunge) Krasch. & Lipsch."
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005044-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdkgk2
title: Occurrence Download

description: A dataset containing 565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.16194 9.75,-74.9455 9.75,-74.9455 9.87107,-75.16194 9.87107,-75.16194 9.75))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 565 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172017-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tarxgs
title: Occurrence Download

description: A dataset containing 37401 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cupido argiades (Pallas, 1771)",
 "Year 2000-2022"
 ]
}

 The dataset includes 37401 records from 524 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230435-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9wdhb
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craugastor persimilis (Barbour, 1926)"
 ]
}

 The dataset includes 81 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004901-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8m29jn
title: Occurrence Download

description: A dataset containing 2274 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cipura paludosa Aubl."
 ]
}

 The dataset includes 2274 records from 182 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197751-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.