cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5339100
title: Dynamic Regulation of N6 ,2′-O-dimethyladenosine (m6Am) in Obesity

description: Proteomics raw data. Abstract: The prevalent m6Am mRNA cap modification was recently identified as a valid target for removal by the human obesity gene FTO along with the previously established m6A mRNA modification. However, the deposition and dynamics of m6Am in regulating obesity are unknown. Here, we investigated the liver m6A/m methylomes in mice fed on a high fat Western-diet and in ob/ob mice. We found that FTO levels were elevated in fat mice, and that genes which lost m6Am marking under obesity were overly downregulated, including the two fatty-acid-binding proteins Fabp2, and Fabp5. Furthermore, the cellular perturbation of FTO correspondingly affected protein levels of its targets. Notably, generally m6Am- but not m6A-methylated genes, were found to be highly enriched in metabolic processes. Finally, we depleted all m6A background via Mettl3 knockout, and unequivocally uncovered the association of m6Am methylation with increased mRNA stability, translation efficiency, and higher protein expression. Together, these results strongly implicate a dynamic role for m6Am in obesity-related translation regulation.
DOI: 10.25345/c5s257
title: MassIVE MSV000088039 - Effects of tyrosine phosphorylation on cellular and membrane functions of human protein ALIX
title: Human apoptosis-linked gene-2 interacting protein X (ALIX) is a conserved adapter protein involved in essential cellular processes including endosomal protein sorting, apoptosis, exosome biogenesis, and many others.
DOI: 10.48324/dandi.000027/0.210831.2033
title: Test dataset for testing dandi-cli.

description: Should be ignored by regular mortals.

ATM contains only a few files from http://github.com/dandi-datasets/nwb_test_data which more or less appropriate (do not lack critical metadata) for testing
DOI: 10.5281/zenodo.5348213
title: Coral cover and coral bleaching in the Gulf of Chiriqui

description: No description provided.
DOI: 10.5281/zenodo.5348207
title: Actenoides lindsayi decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5348206
title: Actenoides lindsayi decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5348265
title: mirTarRnaSeq_COVID

description: Differential expression analysis of data in GSE148729, used in the description of the new R package mirTarRnaSeq
DOI: 10.5281/zenodo.5348264
title: mirTarRnaSeq_COVID

description: Differential expression analysis of data in GSE148729, used in the description of the new R package mirTarRnaSeq
DOI: 10.6084/m9.figshare.14731875.v1
title: Ictal Lid Movements: Blinks and Lid Saccades

description: Two types of lid movements, blinks and lid saccades, have discrete kinematic properties and physiology. These differences are reflected in distinct phenomenology of disorders affecting their neural substrate. Proof of this principle was seen in two patients, one with parietal lobe epilepsy and the other with temporal lobe epilepsy. The lid movements in the patient with parietal lobe epilepsy were rhythmic, yoked, and had a rapid upward component that instantaneously followed a slow downward drift. These cyclic movements strikingly resembled nystagmus, but unlike typical eye nystagmus, the rapid upward component was pathological and seemed to involve a saccadic mechanism. We suggest the terms “ictal lid saccades” or “ictal lid nystagmus” to describe such a phenomenon. In contrast, the patient with temporal lobe epilepsy had ipsilateral lid movements with rapid downward trajectories resembling reflex or spontaneous blinks. The term “ictal blink” is appropriate for this phenomenon.
DOI: 10.6084/m9.figshare.14731875
title: Ictal Lid Movements: Blinks and Lid Saccades

description: Two types of lid movements, blinks and lid saccades, have discrete kinematic properties and physiology. These differences are reflected in distinct phenomenology of disorders affecting their neural substrate. Proof of this principle was seen in two patients, one with parietal lobe epilepsy and the other with temporal lobe epilepsy. The lid movements in the patient with parietal lobe epilepsy were rhythmic, yoked, and had a rapid upward component that instantaneously followed a slow downward drift. These cyclic movements strikingly resembled nystagmus, but unlike typical eye nystagmus, the rapid upward component was pathological and seemed to involve a saccadic mechanism. We suggest the terms “ictal lid saccades” or “ictal lid nystagmus” to describe such a phenomenon. In contrast, the patient with temporal lobe epilepsy had ipsilateral lid movements with rapid downward trajectories resembling reflex or spontaneous blinks. The term “ictal blink” is appropriate for this phenomenon.
DOI: 10.5517/ccdc.csd.cc27136m
title: CCDC 2056639: Experimental Crystal Structure Determination

description: Related Article: Hui-Qian Su, Ru-Fen Zhang, Qiang Guo, Jing Wang, Qian-Li Li, Xiu-Mei Du, Jing Ru, Qing-Fu Zhang, Chun-Lin Ma|2022|J.Mol.Struct.|1247|131290|doi:10.1016/j.molstruc.2021.131290
DOI: 10.5517/ccdc.csd.cc27137n
title: CCDC 2056640: Experimental Crystal Structure Determination

description: Related Article: Hui-Qian Su, Ru-Fen Zhang, Qiang Guo, Jing Wang, Qian-Li Li, Xiu-Mei Du, Jing Ru, Qing-Fu Zhang, Chun-Lin Ma|2022|J.Mol.Struct.|1247|131290|doi:10.1016/j.molstruc.2021.131290
DOI: 10.5517/ccdc.csd.cc27138p
title: CCDC 2056641: Experimental Crystal Structure Determination

description: Related Article: Hui-Qian Su, Ru-Fen Zhang, Qiang Guo, Jing Wang, Qian-Li Li, Xiu-Mei Du, Jing Ru, Qing-Fu Zhang, Chun-Lin Ma|2022|J.Mol.Struct.|1247|131290|doi:10.1016/j.molstruc.2021.131290
DOI: 10.5517/ccdc.csd.cc27139q
title: CCDC 2056642: Experimental Crystal Structure Determination

description: Related Article: Hui-Qian Su, Ru-Fen Zhang, Qiang Guo, Jing Wang, Qian-Li Li, Xiu-Mei Du, Jing Ru, Qing-Fu Zhang, Chun-Lin Ma|2022|J.Mol.Struct.|1247|131290|doi:10.1016/j.molstruc.2021.131290
DOI: 10.5517/ccdc.csd.cc2713br
title: CCDC 2056643: Experimental Crystal Structure Determination

description: Related Article: Hui-Qian Su, Ru-Fen Zhang, Qiang Guo, Jing Wang, Qian-Li Li, Xiu-Mei Du, Jing Ru, Qing-Fu Zhang, Chun-Lin Ma|2022|J.Mol.Struct.|1247|131290|doi:10.1016/j.molstruc.2021.131290
DOI: 10.5517/ccdc.csd.cc2741p4
title: CCDC 2059475: Experimental Crystal Structure Determination

description: Related Article: Mikhail Yu. Moskalik, Ivan A. Garagan, Anton S. Ganin, Vera V. Astakhova, Irina V. Sterkhova, Bagrat A. Shainyan|2021|J.Organomet.Chem.|951|122010|doi:10.1016/j.jorganchem.2021.122010
DOI: 10.5517/ccdc.csd.cc2741q5
title: CCDC 2059476: Experimental Crystal Structure Determination

description: Related Article: Mikhail Yu. Moskalik, Ivan A. Garagan, Anton S. Ganin, Vera V. Astakhova, Irina V. Sterkhova, Bagrat A. Shainyan|2021|J.Organomet.Chem.|951|122010|doi:10.1016/j.jorganchem.2021.122010
DOI: 10.5517/ccdc.csd.cc279c31
title: CCDC 2064572: Experimental Crystal Structure Determination

description: Related Article: Jagadish Das, Daniel Shem-Tov, Shuaizhong Wang, Lei Zhang, Eli Flaxer, Shijie Zhang, Jörg Stierstorfer, Kangcai Wang, Qi-Long Yan, Roman Dobrovetsky, Michael Gozin|2021|Chem.Eng.Journal|426|131806|doi:10.1016/j.cej.2021.131806
DOI: 10.5517/ccdc.csd.cc279c42
title: CCDC 2064573: Experimental Crystal Structure Determination

description: Related Article: Jagadish Das, Daniel Shem-Tov, Shuaizhong Wang, Lei Zhang, Eli Flaxer, Shijie Zhang, Jörg Stierstorfer, Kangcai Wang, Qi-Long Yan, Roman Dobrovetsky, Michael Gozin|2021|Chem.Eng.Journal|426|131806|doi:10.1016/j.cej.2021.131806
DOI: 10.5517/ccdc.csd.cc279c53
title: CCDC 2064574: Experimental Crystal Structure Determination

description: Related Article: Jagadish Das, Daniel Shem-Tov, Shuaizhong Wang, Lei Zhang, Eli Flaxer, Shijie Zhang, Jörg Stierstorfer, Kangcai Wang, Qi-Long Yan, Roman Dobrovetsky, Michael Gozin|2021|Chem.Eng.Journal|426|131806|doi:10.1016/j.cej.2021.131806
DOI: 10.5517/ccdc.csd.cc279c75
title: CCDC 2064576: Experimental Crystal Structure Determination

description: Related Article: Jagadish Das, Daniel Shem-Tov, Shuaizhong Wang, Lei Zhang, Eli Flaxer, Shijie Zhang, Jörg Stierstorfer, Kangcai Wang, Qi-Long Yan, Roman Dobrovetsky, Michael Gozin|2021|Chem.Eng.Journal|426|131806|doi:10.1016/j.cej.2021.131806
DOI: 10.5517/ccdc.csd.cc279c86
title: CCDC 2064577: Experimental Crystal Structure Determination

description: Related Article: Jagadish Das, Daniel Shem-Tov, Shuaizhong Wang, Lei Zhang, Eli Flaxer, Shijie Zhang, Jörg Stierstorfer, Kangcai Wang, Qi-Long Yan, Roman Dobrovetsky, Michael Gozin|2021|Chem.Eng.Journal|426|131806|doi:10.1016/j.cej.2021.131806
DOI: 10.5517/ccdc.csd.cc279c97
title: CCDC 2064578: Experimental Crystal Structure Determination

description: Related Article: Jagadish Das, Daniel Shem-Tov, Shuaizhong Wang, Lei Zhang, Eli Flaxer, Shijie Zhang, Jörg Stierstorfer, Kangcai Wang, Qi-Long Yan, Roman Dobrovetsky, Michael Gozin|2021|Chem.Eng.Journal|426|131806|doi:10.1016/j.cej.2021.131806
DOI: 10.6084/m9.figshare.16550451
title: Ficha técnica serie Élite

description: Ficha técnica de la serie de televisión Élite
DOI: 10.3886/e119446v124
title: COVID-19 US State Policy Database

description: For questions or comments about the database please contact:<br>Alexandra Skinner <br>skinnera@bu.edu <br>Research Fellow & Database Manager<br>Department of Health Law, Policy & Management <br>Boston University School of Public Health<br><br>Database of state policies on closures, shelter-in-place orders, housing protections, changes to Medicaid and SNAP, physical distancing closures, reopening, and more created by researchers at the Boston University School of Public Health. Policies included are state-wide directives or mandates, not guidance or recommendations. In order for a policy to be included, it must apply to the entire state. We are working quickly to go through state government websites to make the policy database as complete and accurate as possible in a rapidly changing policy context. If you use data on a given policy, we encourage you to triangulate based on additional sources of policy data and to review the source documentation to consider the coding decisions that are right for your work. Of course, please email us if you note a discrepancy so we can improve the database for everyone. State policy source documentation can be found at: tinyurl.com/statepolicysources.
description: State policies. Smallest Geographic Unit: State
description: other; Contributors: Megan Cole Brahim, Noa Krawczyk, Carolyn Hoffman, Claire Corkish, Elizabeth Ferrara, Elizabeth Long, Emily Baroni, Faith Contador, Hannah Simon, Morgan Simko, Rachel Scheckman, Sarah Brewer, Sue Kulkarni, Felicia Heykoop, Manish Patel, Aishwarya Vidyasagaran, Andrew Chiao, Cara Safon, Samantha Burkhart, Harry Jung, Victor Lee, Marina MacKinnon, Aarohi Rede, Marie Vearling, Sophie Li, Christina Wang, Tim Levengood, María Jordán P. Emma Chistolini
DOI: 10.6073/pasta/eebf9fda1ee10be7da863c4ecf2254f2
title: Nutrient mineralization from green leaves in litterbags of three mesh sizes in the LUQ-LTER Canopy Trimming 2 Experiment

description: Hurricanes generate disturbances in forests that alter physicochemical characteristics of the habitat by opening the canopy and depositing fresh wood and leaves. Our objectives were to evaluate the effects of simulated hurricane driven changes to nutrient fluxes from litter to soil immediately following canopy disturbance. This study used three complete replicated blocks with two canopy treatments, control and trim+debris. Measurements were made in three 5 x 5 m subplots within 20 x 20 m plots nested in the 30 x 30 m treatment areas. Anion and cation resin membranes were inserted into the fermentation layer at the litter-soil interface and retrieved after one week. The measurement intervals were 2-4 weeks before canopy trimming, 0-1, 1-2, 2-3 and 4-5 weeks after trimming. Nutrient mineralization differed significantly between control and trim+detritus. Total N and P fluxes occurred at 4-5 weeks after canopy trimming. Litter decomposition depends primarily on the interaction among climate, litter quality and biota, so consequently any change in habitat will result in changes in these factors. Our objectives were to evaluate the effects of hurricane driven changes to forests on green litter decomposition, invertebrate communities and nutrient mineralization. This study used three complete replicated blocks with two canopy treatments, control and trim+debris. Measurements were made in three 5 x 5 m subplots within 20 x 20 m plots nested in the 30 x 30 m treatment areas. Green leaves were enclosed in litterbags of three different mesh sizes in each subplot. Litterbags were retrieved after 21, 35, 84 and 168 days; decomposer fauna was extracted and identified, mineralized nutrients were measured using ion resin membranes, and weight loss was determined. Arthropod abundance differed significantly through time. In addition, the number of arthropod taxonomic groups and nutrient mineralization differed significantly between control and trim+detritus, and nutrient mineralization also differed significantly among litterbags mesh sizes. Specifically, nitrogen and phosphorous mineralization were higher in trim+detritus in large mesh size, and decomposer arthropod abundance was also highest in large mesh sized bags. Although % mass remaining changed significantly through time, it did not differ between canopy treatments or litterbag mesh sizes. Thus, our result showed that abundance of arthropods did not affect mass loss. Although canopy disturbance did not affect litter mass loss or arthropod abundance, invertebrate composition differed significantly between canopy treatments with greater dominance by shredders (lepidoptera and diptera larvae) in trim+debris, which corresponded to higher rates of nutrient mineralization from green leaves. Consequently, our results suggest that relative differences in nutrient fluxes from green leaf litter was related to changes in the litter invertebrate food web rather than rates of decomposition.
DOI: 10.5281/zenodo.5307069
title: Simulated wastewater sequencing data for benchmarking SARS-CoV-2 variant abundance estimation

description: To evaluate the accuracy of variant abundance predictions from wastewater sequencing, we built a collection of benchmarking datasets that resemble real wastewater samples. For each variant (B.1.1.7, B.1.351, B.1.427, B.1.429, P.1) we created a series of 33 benchmarks by simulating sequencing reads from a variant genome, as well as a collection of background (non-variant of concern/interest) sequences, such that the variant abundance ranges from 0.05% to 100%. Analogously, we created a second series of benchmarks, simulating reads only from the Spike gene of each SARS-CoV-2 genome. We refer to the first set of benchmarks as "whole genome" (WG) and to the second set of benchmarks as "S-only". We repeated these simulations at different sequencing depths: 100x and 1000x coverage for the whole genome benchmarks, and 100x, 1000x, and 10,000x coverage for the S-only benchmarks.
DOI: 10.5281/zenodo.5342448
title: data for Newbury et al Short term fitness effects of bipartite interactions shape network structure of mutualistic and antagonistic communities

description: speciescountdata.csv contains colony couts and plasmid detection from the main experiment. evonet.csv conatins colony counts of bacteria with and without plasmid pkjk5 from commuities where donors were o/ p ancestral/evolved. AOPV.csv contains optical density data for species a,o,p and v. column 1 is time in hours. Then columns alternate between a, o, p, s, v, a+,o+,p+,s+,v+,s+,v+ (where + denotes plasmid carriage) until column 49. After which the same patten continues, but these were grown with tetracycline. s did not grow at all in the 96-well plate this data was taken from. This is likely due to experimental error, so an additional well plate was used just for s (S.scv). S.csv contains optical density data for species s. column 1 is time in hours. then there are 6 colulmns of s and 6 columns of s+ until column 49. After this the same pattern continues but bacteria were grown with tetracycline.
DOI: 10.5281/zenodo.5342447
title: data for Newbury et al Short term fitness effects of bipartite interactions shape network structure of mutualistic and antagonistic communities

description: speciescountdata.csv contains colony couts and plasmid detection from the main experiment. evonet.csv conatins colony counts of bacteria with and without plasmid pkjk5 from commuities where donors were o/ p ancestral/evolved. AOPV.csv contains optical density data for species a,o,p and v. column 1 is time in hours. Then columns alternate between a, o, p, s, v, a+,o+,p+,s+,v+,s+,v+ (where + denotes plasmid carriage) until column 49. After which the same patten continues, but these were grown with tetracycline. s did not grow at all in the 96-well plate this data was taken from. This is likely due to experimental error, so an additional well plate was used just for s (S.scv). S.csv contains optical density data for species s. column 1 is time in hours. then there are 6 colulmns of s and 6 columns of s+ until column 49. After this the same pattern continues but bacteria were grown with tetracycline.
DOI: 10.23641/asha.15243357
title: Consensus voice therapy ingredients and targets (Van Stan et al., 2021)

description: <b>Purpose: </b>Clinical trials have demonstrated that standardized voice treatment programs are effective for some patients, but identifying the unique individual treatment ingredients specifically responsible for observed improvements remains elusive. To address this problem, the authors used a taxonomy of voice therapy, the Rehabilitation Treatment Specification System (RTSS), and a Delphi process to develop the RTSS-Voice (expert consensus categories of measurable and unique voice treatment ingredients and targets).<b>Method:</b> Initial targets and ingredients were derived from a taxonomy of voice therapy. Through six Delphi Rounds, 10 vocalrehabilitation experts rated the measurability and uniqueness of individual treatment targets and ingredients. After eachround, revisions (guided by the experts’ feedback) were finalized among a primary reader (a voice therapy expert) and two external readers (rehabilitation experts outside the field of voice). Consensus was established when the label and definition of an ingredient or target reached a supramajority threshold (≥ 8 of 10 expert agreement).<b>Results:</b> Thirty-five target and 19 ingredient categories were agreed to be measurable, unique, and accurate reflections of the rules and terminology of the RTSS. Operational definitions for each category included differences in the way ingredients are delivered and the way individual targets are modified by those ingredients.<b>Conclusions: </b>The consensus labels and operationalized ingredients and targets making up the RTSS-Voice have potential to improve voice therapy research, practice, and education/training. The methods used to develop these lists may be useful for other speech, language, and hearing treatment specifications.<br><b>Supplemental Material S1. </b>Results and edits for the target label Delphi Rounds, listed in order of decreasing agreement after Round 1. <b><br></b><b>Supplemental Material S2.</b> Results and edits for the ingredient label Delphi Rounds, listed in order of decreasing agreement after Round 4. <br>Van Stan, J. H., Whyte, J., Duffy, J. R., Barkmeier-Kraemer, J., Doyle, P., Gherson, S., Kelchner, L., Muise, J., Petty, B., Roy, N., Stemple, J., Thibeault, S., & Tolejano, C. J. (2021). Voice therapy according to the rehabilitation treatment specification system: Expert consensus ingredients and targets.<i> American Journal of Speech-Language Pathology</i>. Advance online publication. https://doi.org/10.1044/2021_AJSLP-21-00076
DOI: 10.6084/m9.figshare.15153190
title: Effects of dietary exposure to the engineered nanomaterials CeO<sub>2</sub>, SiO<sub>2</sub>, Ag, and TiO<sub>2</sub> on the murine gut microbiome

description: Rodent studies on the effects of engineered nanomaterials (ENM) on the gut microbiome have revealed contradictory results. Our aim was to assess the effects of four well-investigated model ENM using a realistic exposure scenario. Two independent <i>ad libitum</i> feeding studies were performed. In study 1, female mice from the local breeding facility received feed pellets containing 1% CeO<sub>2</sub> or 1% SiO<sub>2</sub> for three weeks. In study 2, both female and male mice were purchased and exposed to 0.2% Ag-PVP or 1% TiO<sub>2</sub> for four weeks. A next generation 16S rDNA sequencing-based approach was applied to assess impacts on the gut microbiome. None of the ENM had an effect on the α- or β-diversity. A decreased relative abundance of the phylum Actinobacteria was observed in SiO<sub>2</sub> exposed mice. In female mice, the relative abundance of the genus <i>Roseburia</i> was increased with Ag exposure. Furthermore, in study 2, a sex-related difference in the β-diversity was observed. A difference in the β-diversity was also shown between the female control mice of the two studies. We did not find major effects on the gut microbiome. This contrast to other studies may be due to variations in the study design. Our investigation underlined the important role of the sex of test animals and their microbiome composition prior to ENM exposure initiation. Hence, standardization of microbiome studies is strongly required to increase comparability. The ENM-specific effects on Actinobacteria and <i>Roseburia,</i> two taxa pivotal for the human gut homeostasis, warrant further research on their relevance for health.
DOI: 10.15785/sbgrid/592
title: X-Ray Diffraction data from Interferon gamma signalling complex, glycosylated, source of 6E3L structure

description: native dataset
description: processed with XDS
DOI: 10.5281/zenodo.5348299
title: Agapornis roseicollis decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5348298
title: Agapornis roseicollis decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5348327
title: PERUBAHAN SOSIAL MENGHADAPI WABAH CORONA COVID-19 PADA ASUHAN KEBIDANAN SECARA KOMPREHENSIF

description: Pandemi Covid-19 menimbulkan banyak kekhawatiran dan menyebabkan ketakutan pada masyarakat terutama pada ibu hamil untuk datang ke pelayanan kesehatan terutama saat mengalami gangguan kesehatan dan/atau untuk memeriksakan kehamilan. Hal ini berdampak pada tenaga kesehatan khususnya bidan dalam memberikan asuhan kebidanan secara komprehensif (continuity of care) untuk mencegah terjadinya kematian ibu dan anak. Kurangnya pengetahuan ibu hamil dan keluarga terkait covid-19; akses pelayanan kebidanan di era pandemi covid-19 mengalami perubahan dimana fasilitas kesehatan primer/PMB (Praktik Mandiri Bidan) membatasi pelayanan; keselamatan bidan dan pasien harus dilindungi sehingga perlunya penyesuaian pelayanan agar terhindar dari penularan; serta tingginya kasus penderita covid-19 yang dirawat di rumah sakit rujukan sehingga berpengaruh terhadap penanganan pelayanan rujukan maternal dan neonatal, merupakan beberapa tantangan yang dihadapi bidan di era pandemi saat ini. Pemahaman isi buku KIA oleh ibu dan keluarga, serta memberikan edukasi pada ibu hamil, bersalin, nifas, bayi, balita dan anak-anak ditengah pandemi Covid-19 merupakan bentuk upaya pencegahan penularan virus Covid-19 sehingga tetap memperoleh pelayanan yang berkualitas.