cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10498018
title: Cut&Run H3K27ac inVivo HFD BA 10mg

description: For CUT&RUN against H3K27ac in mouse liversamples, we utilised the EpiCypher inc CUTANA ChIC/CUT&RUN kit (EpiCypher, SKU: 14-9521048) according to the manufacturer’s instructions with minor modifications.For in vivo experiments, approximately 200 mg of liver tissue was homogenized in DMEM(Gibco, 41966-029) using a potter tube and a glass pestle with 12 strokes. The resulting cellsuspension was then centrifuged at 1000 xg for 5 minutes at 4°C. The samples weresubsequently washed with 1 ml PBS (Sigma D8537) supplemented with cOmplete proteaseinhibitor cocktail (Roche, CO-RO SKU 11697498001) and 10 mM sodium butyrate (SigmaAldrich, 303410), followed by centrifugation under the same conditions. The following stepswere performed in presence of protease inhibitors and sodium butyrate. Washed cells wereresuspended in 1 ml of NIB with 0.3% IGEPAL CA-630 (Sigma, I8896) and incubated on icefor 5 minutes. The nuclear suspension was then centrifuged at 1000 xg for 5 minutes at 4°C.The resulting nuclear pellet was washed with 1 ml of nucleus isolation buffer (NIB) (15 mMTris-HCl (Carl Roth, Art.-Nr. 9090.3) pH 7.5, 60 mM KCl (Carl Roth, Art.-Nr. 6781.3), 11 mMCaCl2 (Carl Roth, Art.-Nr. CN93.1), 5 mM NaCl (Carl Roth, Art.-Nr. 3957.2), 5 mM MgCl2 (CarlRoth, Art.-Nr. KK36.2), 250 mM sucrose (Sigma, S0389), 1 mM 1,4-Dithiothreitol (Carl Roth,Page 37Art.-Nr. 6908.3), 10 mM sodium butyrate (Sigma Aldrich, 303410)) without IGEPAL CA-630,and the nuclei were subsequently filtered through a 30 μm strainer. An additional washing stepwas performed with 1 ml of NIB, and after centrifugation, and the nuclei resuspended in 100μl of NIB without IGEPAL CA-630. The nuclei were counted, and 0.5 x 106 nuclei were usedfor the subsequent procedure, either in step 7 for ACLY ChIC (Version 1.0 EpiCypher, SKU:14-1048) or in step 14 for H3K9ac and H3K27ac ChIC (Version 3.3 EpiCypher, SKU: 14-1048)of the manufacturer's protocol.For each reaction, 2 μg of antibody was used (Diagenode C15410196). Sequencinglibraries were prepared using NEBNext Ultra II library preparation procedure (New EngladBiolabs, E7645L) with modifications according to NGS Library preparation of CUTANAChIC/CUT&RUN kit (EpiCypher, SKU: 14-1048, Version 1.0), and then assessed for qualityand quantity by BioAnalyzer (Agilent). Generated libraries were sequenced on an IlluminaNovaSeq instrument (150 bp, paired-end)
DOI: 10.6084/m9.figshare.6840182
title: Lack of introgression of Japanese quail in a captive population of Common quail

description: Microsatellite raw data; raw mtDNA fasta file. <br>
DOI: 10.6084/m9.figshare.6840182.v1
title: Lack of introgression of Japanese quail in a captive population of Common quail

description: Microsatellite raw data; raw mtDNA fasta file. <br>
DOI: 10.5281/zenodo.10582252
title: Model Outputs for Characterizing the Atmospheric Mn Cycle and Its Impact on Terrestrial Biogeochemistry

description: Includes the model output files used in calculations regarding the research article "Characterizing the Atmospheric Mn Cycle and Its Impact on Terrestrial Biogeochemistry". Output files contains: 1) surface Mn concentrations, annual; 2) Mn deposition, monthly; 3) soil Mn map; 4) soil Mn "pseudo" turnover time.
description: NMM and LL would like to acknowledge the support of DOE grant: DE-SC0021302.
DOI: 10.5281/zenodo.8323216
title: Model Outputs for Characterizing the Atmospheric Mn Cycle and Its Impact on Terrestrial Biogeochemistry

description: Includes the model output files used in calculations regarding the research article "Characterizing the Atmospheric Mn Cycle and Its Impact on Terrestrial Biogeochemistry". Output files contains: 1) surface Mn concentrations, annual; 2) Mn deposition, monthly; 3) soil Mn map; 4) soil Mn "pseudo" turnover time.
description: NMM and LL would like to acknowledge the support of DOE grant: DE-SC0021302.
DOI: 10.5281/zenodo.8323217
title: Model Outputs for Characterizing the Atmospheric Mn Cycle and Its Impact on Terrestrial Biogeochemistry

description: Includes the model output files used in calculations regarding the research article "Characterizing the Atmospheric Mn Cycle and Its Impact on Terrestrial Biogeochemistry". Output files contains: 1) surface Mn concentrations, annual; 2) Mn deposition, monthly; 3) soil Mn map; 4) soil Mn "pseudo" turnover time.
description: NMM and LL would like to acknowledge the support of DOE grant: DE-SC0021302.
DOI: 10.57967/hf/1712
title: ro-paraphrase-bible
DOI: 10.5281/zenodo.10402853
title: DSMBind: SE(3) denoising score matching for unsupervised binding energy prediction and nanobody design

description: This record provides the training and evaluation dataset for DSMBind

Paper link: https://www.biorxiv.org/content/10.1101/2023.12.10.570461v1.abstract

Github repo: https://github.com/wengong-jin/DSMBind
DOI: 10.5281/zenodo.10402852
title: DSMBind: SE(3) denoising score matching for unsupervised binding energy prediction and nanobody design

description: This record provides the training and evaluation dataset for DSMBind

Paper link: https://www.biorxiv.org/content/10.1101/2023.12.10.570461v1.abstract

Github repo: https://github.com/wengong-jin/DSMBind
DOI: 10.5281/zenodo.10582261
title: DSMBind: SE(3) denoising score matching for unsupervised binding energy prediction and nanobody design

description: This record provides the training and evaluation dataset for DSMBind

Paper link: https://www.biorxiv.org/content/10.1101/2023.12.10.570461v1.abstract

Github repo: https://github.com/wengong-jin/DSMBind
DOI: 10.5281/zenodo.10580565
title: Data set for the publication

description: Data set for the publication


"Network-based analysis of heterogeneous patient-matched brain and extracranial melanoma metastasis pairs reveals three homogeneous subgroups"
DOI: 10.5281/zenodo.8182912
title: Data set for the publication

description: Data set for the publication


"Network-based analysis of heterogeneous patient-matched brain and extracranial melanoma metastasis pairs reveals three homogeneous subgroups"
DOI: 10.5281/zenodo.8182913
title: Data set for the publication

description: Data set for the publication "Network-based analysis of heterogeneous patient-matched brain and extracranial melanoma metastasis pairs reveals three homogeneous subgroups"
DOI: 10.5281/zenodo.10581763
title: A Global Map of Gullied Hillslopes on Mars

description: This dataset is associated with the 2024 Icarus publication: 'A global map of gullied hillslopes' by Noblet A., Conway S. J. and Osinski G. R.. Martian gullies are geologically recent landforms that resemble terrestrial gullies. The distribution of gullies on Mars has been used to support different modes of formation involving CO2, H2O or entirely dry processes. 

This dataset contains a global map of gullied hillslopes on Mars. The gullied hillslopes were digitized as polygons, using a Context camera (CTX) mosaic as basemap. The geographic coordinate system is Mars2000 (#WKID 104905). 

Version 1 of the datasep contains 7,846 gullied hillslopes features and 7 field in the attribute table. Following is a description of each field: 



OBJECTID: Index number of the gullied hillslope polygon.

HarrisonID: Corresponding index number of the site previously identified by Harrison et al. (2015). A value of 99999 corresponds to gullied hillslopes that were not identified in this previous study.

CRATER_ID: If the gullied hillslope polygon is within a crater identified by Robbins and Hynek (2012), this field corresponds to the corresponding CRATER_ID field from their catalog.

Centr_Long: Longitude of the centroid of the polygon, in decimal degrees.

 Centr_Lat: Latitude of the centroid of the polygon, in decimal degrees.

 HiRISE_cov: HiRISE coverage of the gullied hillslope. This field is set to ‘YES’ if the gullied hillslope polygon intersects the footprint of an HiRISE observation, to ‘NO’ otherwise. This field is calculated using the HiRISE coverage shapefile from April 2023. 


GG_Aspect_Gradient_stats.txt  contains the comma separated values of aspect and gradient statistics of the mapped gullied hillslopes. These values were derived from Mars Orbiter Laser Altimeter (MOLA) (Smith et al., 1999) gridded products at 463m/px. Each line in the file represents one MOLA pixel that is included in a gullied hillslope polygon.
DOI: 10.34740/kaggle/dsv/7508906
title: Public Opinion Russia Ukraine War (Updated Daily)
DOI: 10.3217/xyq90-fa006
title: Data supporting "Single-molecular diffusivity and long jumps of large organic molecules: CoPc on Ag(100)"

description: Data set containing helium spin-echo data on the dynamics of CoPc molecules on a Ag(100) surface, supporting the publication "Single-molecular diffusivity and long jumps of large organic molecules: CoPc on Ag(100)".

Data is stored in MATLAB or plain text files.
DOI: 10.3217/z5d3c-jev61
title: Data supporting "Single-molecular diffusivity and long jumps of large organic molecules: CoPc on Ag(100)"

description: Data set containing helium spin-echo data on the dynamics of CoPc molecules on a Ag(100) surface, supporting the publication "Single-molecular diffusivity and long jumps of large organic molecules: CoPc on Ag(100)".

Data is stored in MATLAB or plain text files.
DOI: 10.25505/fiz.icsd.cc2h4r8p
title: CSD 2298472: Experimental Crystal Structure Determination

description: Related Article: Jia-Ting Liu, Abdusalam Ablez, Qian-Qian Hu, Jun-Hao Tang, Chuan Lv, Lu Yang, Mei-Ling Feng, Xiao-Ying Huang|2024|CrystEngComm|26|691|doi:10.1039/D3CE00960B
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2h4r9q
title: CSD 2298473: Experimental Crystal Structure Determination

description: Related Article: Jia-Ting Liu, Abdusalam Ablez, Qian-Qian Hu, Jun-Hao Tang, Chuan Lv, Lu Yang, Mei-Ling Feng, Xiao-Ying Huang|2024|CrystEngComm|26|691|doi:10.1039/D3CE00960B
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h4tr7
title: CCDC 2298549: Experimental Crystal Structure Determination

description: Related Article: Efe Bilal Sönmez, Şule Şahin Ün, Ceylan Mutlu Balcı, Nida Arslan, Devrim Atilla, Mine Gül Şeker, Hanife İbişoğlu|2024|Inorg.Chim.Acta|563|121936|doi:10.1016/j.ica.2024.121936
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h5xsd
title: CCDC 2299604: Experimental Crystal Structure Determination

description: Related Article: Mei-Xin Hong, Zi-Heng Wu, Cheng Chen, Lingyun Cao, Haiquan Tian, Xiu-Ying Zheng|2024|Polyhedron|251|116847|doi:10.1016/j.poly.2024.116847
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h5xtf
title: CCDC 2299605: Experimental Crystal Structure Determination

description: Related Article: Mei-Xin Hong, Zi-Heng Wu, Cheng Chen, Lingyun Cao, Haiquan Tian, Xiu-Ying Zheng|2024|Polyhedron|251|116847|doi:10.1016/j.poly.2024.116847
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h5xvg
title: CCDC 2299606: Experimental Crystal Structure Determination

description: Related Article: Mei-Xin Hong, Zi-Heng Wu, Cheng Chen, Lingyun Cao, Haiquan Tian, Xiu-Ying Zheng|2024|Polyhedron|251|116847|doi:10.1016/j.poly.2024.116847
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h5xwh
title: CCDC 2299607: Experimental Crystal Structure Determination

description: Related Article: Mei-Xin Hong, Zi-Heng Wu, Cheng Chen, Lingyun Cao, Haiquan Tian, Xiu-Ying Zheng|2024|Polyhedron|251|116847|doi:10.1016/j.poly.2024.116847
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2h7rfy
title: CSD 2301360: Experimental Crystal Structure Determination

description: Related Article: Larisa V. Shvanskaya, Polina V. Krikunova, Tatyana M. Vasilchikova, Elena Y. Borovikova, Olga S. Volkova, Alexander N. Vasiliev|2024|New J.Chem.|48|1952|doi:10.1039/D3NJ05142K
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h821x
title: CCDC 2301658: Experimental Crystal Structure Determination

description: Related Article: Anna V. Korotina, Svetlana G. Tolshchina, Denis A. Gazizov, Alexander S. Steparuk, Grigory A. Kim, Nadezhda S. Demina, Ilya N. Ganebnykh, Pavel A. Slepukhin, Alexey E. Aleksandrov, Alexey R. Tameev, Gennady L. Rusinov|2024|New J.Chem.|48|1983|doi:10.1039/D3NJ05306G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2h8cjp
title: CSD 2301952: Experimental Crystal Structure Determination

description: Related Article: Xiaoheng Li, Dazhi Lu, Shuxian Wang, Kui Wu, Haohai Yu, Jing Li, Huaijin Zhang|2024|CrystEngComm|26|697|doi:10.1039/D3CE01151H
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8n5m
title: CCDC 2302220: Experimental Crystal Structure Determination

description: Related Article: Emily G. Meekel, Thomas C. Nicholas, Ben Slater, Andrew L. Goodwin|2024|CrystEngComm|26|673|doi:10.1039/D3CE01078C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8n6n
title: CCDC 2302221: Experimental Crystal Structure Determination

description: Related Article: Emily G. Meekel, Thomas C. Nicholas, Ben Slater, Andrew L. Goodwin|2024|CrystEngComm|26|673|doi:10.1039/D3CE01078C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8n7p
title: CCDC 2302222: Experimental Crystal Structure Determination

description: Related Article: Emily G. Meekel, Thomas C. Nicholas, Ben Slater, Andrew L. Goodwin|2024|CrystEngComm|26|673|doi:10.1039/D3CE01078C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8n8q
title: CCDC 2302223: Experimental Crystal Structure Determination

description: Related Article: Emily G. Meekel, Thomas C. Nicholas, Ben Slater, Andrew L. Goodwin|2024|CrystEngComm|26|673|doi:10.1039/D3CE01078C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8n9r
title: CCDC 2302224: Experimental Crystal Structure Determination

description: Related Article: Emily G. Meekel, Thomas C. Nicholas, Ben Slater, Andrew L. Goodwin|2024|CrystEngComm|26|673|doi:10.1039/D3CE01078C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h8nbs
title: CCDC 2302225: Experimental Crystal Structure Determination

description: Related Article: Emily G. Meekel, Thomas C. Nicholas, Ben Slater, Andrew L. Goodwin|2024|CrystEngComm|26|673|doi:10.1039/D3CE01078C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/7489678
title: Layline Shareholder activism dataset
DOI: 10.5281/zenodo.8001811
title: Uncertainty Interactions of Photosynthetic Parameters in a Land Surface Model

description: Input scripts, datasets and outputs used for the GSA methods. Please read the README and workflow files within the ZIP file.
DOI: 10.5281/zenodo.10582231
title: Lateral Flow Assay time series dataset for Covid-19 standard samples

description: It was used as a dataset in https://github.com/Artinto/Rapid_Deep_Learning-Assisted_Predictive_Diagnostics_for_Point-of-Care_Testing.
DOI: 10.5281/zenodo.10582232
title: Lateral Flow Assay time series dataset for Covid-19 standard samples

description: It was used as a dataset in https://github.com/Artinto/Rapid_Deep_Learning-Assisted_Predictive_Diagnostics_for_Point-of-Care_Testing.
DOI: 10.25345/c50c4sw4x
title: MassIVE MSV000093948 - GNPS Germ-Free Mice Inoculated with or without Lactobacillus rhamnosus under Tryptophan-Sufficient/Deficient Diet
title: Lacticaseibacillus rhamnosus (LGG), a promising probiotic for gastrointestinal disorders, has been found to significantly impact the host's intestinal metabolome, excluding pathobiont bacteria colonization. However, the specific identity and health impact of LGG-dependent metabolites remain poorly understood. This study aims to investigate the host-LGG-tryptophan interaction by analyzing feces and serum from LGG mono-associated GF mice fed trp-sufficient or trp-free diets.
DOI: 10.6084/m9.figshare.25106090.v1
title: Data from: Décalage temporel dans l’établissement des érables en forêt boréale révélé par une population marginale à la limite nordique de l’érable à sucre

description: A MSExcel spreadsheet including wood macrofossil charcoal data extracted from 25 mineral soil samples in site T70, located at the leading edge of sugar maple in the mixedwood ecotone.<br>## Description of the Data and file structure---Sheet 1-NChar - Number of charcoal particles recovered from each microsite. Dispositif: Indicates whether charcoal was extracted from soil collected in a systematic sampling (ERS) or targeted samplig (CIB); Microsite: a unique identifier for each soil sample in ERS or CIB; N_charcoal: the number of charcoal extracted from individual microsites.Sheet 2-Identification - Details of taxonomic identifications and radiocarbon datations. Dispositif: Indicates whether charcoal was extracted from soil collected in a systematic sampling (ERS) or targeted sampling (CIB); Microsite: a unique identifier for each soil sample in ERS or CIB; Sieve: the sieve from which the charcoal particles was retrieved (4mm or 2mm mesh-size); Sample ID: an arbitrary number (given for each individual particle recovered from a microsite at a given mesh-size); Charcoal ID: a unique identifier for each charcoal in the dataset; Mass: the mass of each individual charcoal particle before taxonomic identification (in mg); Notes (in french): some explanatory notes regarding features used for taxonomic identifications and/or taphonomic issues; Taxonomic ID: the taxonomic identifications (NA: not available); Mass2: the mass of charcoal material that was send for radiocarbon dating after taxonomic identification (in mg); Lab Number (UCIAMS; ULA): Laboratory number given by the Keck Carbon Cycle AMS Facility (UCIAMS) and Laboratoire de radiochronologie 14C du Centre d’études nordiques (ULA); 14C age: radiocarbon age and standard deviation (in years Before Present); 2σ-interval (and probability): the two-sigma interval of the calibrated date having the highest probability (in calibrated years Before Present) and associated probability; Median calibrated age: the median calibrated age (in calibrated years Before Present)
DOI: 10.34740/kaggle/dsv/7509001
title: crypto-data-daily-updates