cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.rk0pq/1
title: Sample locations and microsatellite data

description: Geographic locations and microsatellite data for the 20 sampled colonies (23 nests) in this paper.
DOI: 10.5061/dryad.1960/1
title: microsatellite data Berner et al. 2010
DOI: 10.5061/dryad.1960/2
title: morphology data Berner et al. 2010
DOI: 10.5061/dryad.2016/1
title: dataset
DOI: 10.5061/dryad.2016/2
title: individual_eggs
DOI: 10.5061/dryad.8289/1
title: Sept2010align

description: Wolbachia pipientis (wPip) sequence alignment of the intergenic region (pp-hC1A_5).  The (pp-hC1A_5) region is flanked by a polynucleotide phosphorylase and a hypothetical protein (C1A_5) gene.  wPip strains found in C. pipiens complex species were sampled in seven worldwide distributed geographic locations. Single nucleotide differences are marked in gray.  Wolbachia pipientis strain source: wPip_mpAR, Argentina; wPip_mpAU, Australia; wPip_mpGR, Greece; wPip_mpIT, Italy; wPip_mpJP, Japan; wPip_mpUS, U.S.A.; wPip_Sang, Sanger Institute.
DOI: 10.5061/dryad.8297/1
title: Malausa_et_al_MER_Dryad
DOI: 10.5061/dryad.8602/1
title: Data

description: Geographical, Climatic, Geological information of the pixels used in the paper (including ocurrence localities  from each lineage).
DOI: 10.5061/dryad.8688/2
title: Fitness measures from spotted hyenas

description: Fitness data for subjects in study. Details of collection and variable descriptions may be found in the publication and in the readme file associated with this data file.
DOI: 10.5061/dryad.8698/5
title: Plasma_Testosterone

description: Plasma testosterone levels in females of F2 generation of low and high egg testosterone lines
DOI: 10.5255/ukda-sn-6851-1
title: Quarterly Labour Force Survey, April - June, 2011
DOI: 10.5255/ukda-sn-6906-1
title: Quarterly Labour Force Survey, July - September, 2011
DOI: 10.5061/dryad.49sk0/1
title: BlackmanME2011_Data

description: Archive of seven data files.  Includes: Fig1Data_BlackmanME2011, Fig2_S2Data_BlackmanME2011, Fig3_S2Data_BlackmanME2011, FigS1Data_BlackmanME2011, FigS2_4_5_6_LD_BlackmanME2011, FST_genotypes_BlackmanME2011, QstData_BlackmanME2011
DOI: 10.5061/dryad.4kb77/1
title: reproductive_rate

description: data file for analysis of reproductive rate; text file with column headers; further details see Materials and methods in the paper
DOI: 10.5061/dryad.4kb77/2
title: resistance

description: data file for analysis of resistance (= proportion infected individuals); text file with column headers; further details see Materials and methods in the paper
DOI: 10.5061/dryad.8616/1
title: colbeck_allsites

description: AFLP datafile for all sites used in phylogeographic analysis
DOI: 10.5061/dryad.8616/2
title: colbeck_introgression

description: AFLP data file from analysis of between clade introgression
DOI: 10.5061/dryad.8653/1
title: data

description: Data from laboratory trials.
DOI: 10.5061/dryad.8698/4
title: F3_generation

description: Egg characteristics in F3 generation of high and low egg testosterone lines
DOI: 10.5061/dryad.5002s/1
title: SNP data for ME publication 110519
DOI: 10.5061/dryad.7960/4
title: 500 dichotomous supertrees from randomly resolving polytomies

description: 500 dichotomous supertrees obtained from randomly resolving polytomies from "2_funketal2005_dated.tre". The file is in NEXUS format.
DOI: 10.5061/dryad.7960/5
title: Sexual system matrix

description: Matrix with sexual system data for taxa included in phylogenetic hypotheses. Sexual system was extracted from "fulldata.xls". 0 = hermaphroditism, 1 = andromonoecy, 2 = gynomonoecy, 3 = monoecy, 4 = dioecy, 5 = gynodioecy, 6 = trimonoecy.
DOI: 10.5061/dryad.802/14
title: Appendix 3-2
DOI: 10.5061/dryad.802/15
title: Appendix 3-3
DOI: 10.5061/dryad.802/2
title: Appendix 1-2
DOI: 10.5061/dryad.802/3
title: Appendix 3-4
DOI: 10.5061/dryad.802/4
title: Appendix 3-5
DOI: 10.5061/dryad.802/5
title: Appendix 3-6
DOI: 10.5061/dryad.802/6
title: Appendix 3-7
DOI: 10.5061/dryad.802/7
title: Appendix 3-8
DOI: 10.5061/dryad.8688/1
title: Morphological measurements of spotted hyenas

description: Morphological data collected on immobilized subjects in the field. Details of collection and measurements can be found in the publication and in the readme file associated with this file.
DOI: 10.5061/dryad.1ps0t/2
title: Code for Speciation-based Model, MinMax variation
DOI: 10.5061/dryad.1ps0t/3
title: Code for Speciation-based Model; No Condition, Extant, and Min variations
DOI: 10.5061/dryad.1ps0t/4
title: Code for Time-based Model, MinMax variation
DOI: 10.5061/dryad.1ps0t/5
title: Code for counting matches between simulated data and actual clade disparity

description: This code (written in R) counts the number of simulations generated under each parameter combination that match the actual disparity of the real clade, within 1 standard error.  In order to use this code, input the morphological variance of the real clade as “var” and the standard error of this variance as “SE” by replacing the example numbers.  In the next line, input the file name of the data output from the simulations between the quotation marks by replacing the example file name (minmaxvar.txt).  Finally, replace the output file name between the quotation marks in the last line by replacing the example output name (minmaxvarcount.xls).
DOI: 10.5061/dryad.4kb77/3
title: correlation_reproduction_resistance

description: data file for analysis of correlation between resistance and reproductive rate; text file with column headers; further details see Materials and methods in the paper
DOI: 10.5061/dryad.802/8
title: Appendix 1-3
DOI: 10.5061/dryad.802/9
title: Appendix 1-4
DOI: 10.5061/dryad.8065/1
title: MicrosatsforGenepop
DOI: 10.5061/dryad.82/1
title: Price and Gittleman Data Set
DOI: 10.5061/dryad.820/1
title: Gatesy et al Data Set
DOI: 10.5061/dryad.823/1
title: Marvaldi et al Data Set
DOI: 10.5061/dryad.829/1
title: Miller Data Set
DOI: 10.5061/dryad.833/1
title: Mast and Nyffeler Appendix
DOI: 10.5061/dryad.836/1
title: Morando et al Appendix 1
DOI: 10.5061/dryad.836/2
title: Morando et al Appendix 2
DOI: 10.5061/dryad.s26qt314/1
title: AFLP genotypes for Enallagma hageni and E. ebrium

description: AFLP genotype (120 locus) for Enallagma hageni (H) and E. ebrium (E) from 20 sites in QO, PE and NE.
DOI: 10.5061/dryad.s26qt314/2
title: Field sampling data for Enallagma hageni and E. ebrium

description: Field sampling data for Enallagma hageni (H) and E. ebrium (E) used for spatial analysis.
DOI: 10.5061/dryad.1ps0t/6
title: Morphometric data for East African Cichlids (Ectodini, Lamprologini, Tropheini, Cyprichromini, Perissodini, Limnochromini) downloaded from FishBase

description: This spreadsheet contains the data downloaded from FishBase.  Each species name also includes a link to the FishBase page for that species.  The data is separated by tribe, and includes data for species from Ectodini, Lamprologini, Tropheini, Cyprichromini, Perissodini, and Limnochromini.  The characters used include standard length (% total length), pre-anal length (% total length), pre-dorsal length (% total length), pre-pelvic length (% total length), pre-pectoral length (% total length), body depth (% total length), head length (% total length), eye diameter (% head length), pre-orbital length (% head length), and the aspect ratio (calculated as height squared divided by surface area) of the caudal fin.
DOI: 10.5061/dryad.1ps0t/7
title: Code for calculations for probability matrices and likelihood
DOI: 10.5061/dryad.6fm54/1
title: adults

description: Description of Dryad file "adults.csv" - This file contains the morphometric data and microsatellite genpotypes used to estimate heritability from wild populations. The dimensions are 70 columns x 128 rows. The first row is simply a column counter for the file. Rows &gt; 1 contain data for a single coral colony. Columns 1-3 contain ecomorph, habitat, and site information. Note that the "STRI Point" site represents the lagoon environment in the manuscript, and the "Playa paunch" site represents the exposed reef environment. Columns 4-34 contain bookstein coordinates for the landmarks described in Appendix S1. Columns 35-41 contain linear distances (mm) also described in Appendix S1. Columns 46-71 contain microsatellite genotype information for each individual coral. The label in row 2 is the locus name. The two columns under each label contain the allele size in base pair of the SSR for each chromosome. I.e. column 42 contains the two allele sizes for locus "D3": this locus in homozygous as both alleles are 270 bp long. A "0" in these columns indicates the product did not amplify, which we interpret as a null allele (see text).
DOI: 10.5061/dryad.6fm54/2
title: common_garden

description: Description of Dryad file "common_garden.csv" - This file contains the morphometric data and microsatellite genpotypes used to estimate heritability from a common garden. The dimensions are 70 columns x 266 rows. The first row is simply a column counter for the file. Rows &gt; 1 contain data for a single coral colony grown in the common garden. Columns 1-4 contain ecomorph, habitat, site, and individual information. Note that the "STRI Point" site represents the lagoon environment in the manuscript, and the "Playa paunch" site represents the exposed reef environment.  Individual labels, e.g. "DS14.1", contain the following information: (i) first letter indicates habitat (D=reef, S= Seagrass), (ii) second letter indicates ecomorph (S= Short, T= Tall), (iii) following two digits indicate the dam identity, and (iv) the final digit indicates offspring identity.  Thus offpspring with the same dam identity are sibs. Columns 5-35 contain bookstein coordinates for the landmarks described in Appendix S1. Columns 36-42 contain linear distances (mm) also described in Appendix S1. Columns 43-70 contain microsatellite genotype information for each individual coral, inferred from the maternal dam, see text for details. The label in row 2 is the locus name. The two columns under each label contain the allele size in base pair of the SSR for each chromosome. I.e. column 42 contains the two allele sizes for locus "D3": this locus in homozygous as both alleles are 270 bp long. A "0" in these columns indicates the product did not amplify, which we interpret as a null allele (see text).
DOI: 10.5061/dryad.6fm54/3
title: parent_offpsring

description: Description of Dryad file "parent_offspring.csv" - This file contains the morphometric data for wild parents and their offspring grown in a common garden. The dimensions are 80 columns x 264 rows. The data is structures so that "y-values" the data prefixed by "O" in columns 42-80 can be regressed on "x-values" or the data prefixed by "P" in columns 5-41. The first row is simply a column counter for the file. Rows &gt; 1 contain morphometric measurements for wild parents and common garden offspring. Columns 1-4 contain ecomorph, habitat, site, and dam information. Note that the "STRI Point" site represents the lagoon environment in the manuscrpt.  Dam labels, e.g. "DS-14", contain the following information: (i) first letter indicates habitat (D=reef, S= Seagrass), (ii) second letter indicates ecomorph (S= Short, T= Tall), (iii) a number &gt; "-" indicating dam identity. Columns 5-42 contain bookstein coordinates and linear measurements for the maternal dam. Dam measurements have the prefix "P" added to the codes described in Appendix S1. Columns 42-80 contain bookstein coordinates and linear measurements for an individual offpspring. Offspring measurements have the prefix "O" added to the codes described in Appendix S1.
DOI: 10.5061/dryad.841/1
title: Gatesy et al Data Set
DOI: 10.5061/dryad.8429/1
title: DataFile1

description: DNA sequence data for the 207 genes associated with the publication.
DOI: 10.5061/dryad.845/1
title: Eurycea Allozyme Data Set
DOI: 10.5061/dryad.845/2
title: Eurycea Combined Data Set
DOI: 10.5061/dryad.845/3
title: Eurycea DNA Data Set
DOI: 10.5061/dryad.845/4
title: Eurycea DNA/SSR Data Set
DOI: 10.5061/dryad.852/1
title: Appendices 1-2-3
DOI: 10.5061/dryad.857/1
title: Grass_Photos.zip

description: These are a set of original images of grass lawn patterns observed at Duke University, North Carolina, November 2008, approximately 2 days after a frost. Four of these images show transects and patches of the lawn where soil moisture measurements were taken.  These measurements are described in the excel file. This excel file also includes the appropriate scaling conversions (from pixels to cm) that can be used to make quantitative measurements on the images.
DOI: 10.5061/dryad.864/1
title: Metabolic rate-temperature and development-rate temperature data for insects
DOI: 10.5061/dryad.t215b/1
title: Hoskin et al - Am Nat - Morphology

description: Morphology data, collected in the field.

Column headings, abbreviations, units -
Species;
Sex: M=male;
SVL: Snout-to-vent length, in mm;
TL: Tarsus length, in mm;
HW: Head width, in mm;
DISC: Third finger-disc width, in mm;
WT: Weight, in grams; Major Lineage: Major genetic lineages. H=Hinchinbrook Is., N=northern, C=central;
Site/Location;
Altitude: elevation above sea level, in metres.
DOI: 10.5061/dryad.28368/1
title: Certhidea Genotype Data

description: Raw microsatellite genotype data generated from both historic museum samples and modern blood samples.  Both lab reference numbers and museum reference numbers for historic specimens are noted.  Alleles are coded as number of repeat units.
DOI: 10.5061/dryad.8160/1
title: Supplementary material S1
DOI: 10.5061/dryad.868/1
title: Lizard Alignment
DOI: 10.5061/dryad.868/2
title: Snake Alignment
DOI: 10.5061/dryad.887/1
title: Table A1 - Physical characteristics of oceanic islands included in the study
DOI: 10.5061/dryad.887/2
title: Table A2 - Genera that have speciated on oceanic islands
DOI: 10.5061/dryad.887/3
title: Table A3 - Endemism and speciation data by taxon and island
DOI: 10.5061/dryad.887/4
title: Table A4 - Results of phylogeny search to check putative speciation events
DOI: 10.5061/dryad.887/5
title: Table A5 - Best multiple regression models for the effects of island characteristics on speciation
DOI: 10.5061/dryad.887/6
title: Table A6 - Gene flow data for all study taxa
DOI: 10.5061/dryad.900/1
title: SAS code

description: A Word file showing SAS-MAS code for the basic model and two different sets of Difference estimates
DOI: 10.5061/dryad.900/2
title: Miame Compliance
DOI: 10.5061/dryad.h8t3v/1
title: Measurements of little greenbul song
DOI: 10.5061/dryad.h8t3v/2
title: Responses to playback experiments
DOI: 10.5061/dryad.rm73j/1
title: HopkinsPteroLandmark

description: The text file "HopkinsPteroLandmarks.txt" contains x and y coordinates landmarks for all specimens used in this analysis before paired landmarks were reflected across the sagittal axis. The first column shows the species name. The second column shows the collection number that the specimen came from. See Tables 1 and 2 from the supplementary online material accompanying this paper for locality information for each collection. The remaining columns list the x and y coordinates of each landmark from 1 to 15. Missing landmarks are indicated by "NA". See ReadMe file for figure showing landmarks.
DOI: 10.5061/dryad.t215b/2
title: Hoskin et al - Am Nat - Call

description: Call data - collected in the field

Column headings, abbreviations, units -
Species;
Sex: M=male;
Major Lineage: Major genetic lineages. H=Hinchinbrook Is., N=northern, C=central;
DUR: Call duration, in milliseconds;
DF: Call dominant frequency, in kHz;
PULSE: Call pulse rate, in pulses/second;
Temperature: Air temperature in degrees Celsius;
Site/Location;
Altitude: elevation above sea level, in metres.
DOI: 10.5061/dryad.56k55/1
title: Dataset Rode et al 2011

description: Experimental data in Excel format
DOI: 10.5061/dryad.8160/2
title: Supplementary material S2
DOI: 10.5061/dryad.8160/3
title: Supplementary material S3
DOI: 10.5061/dryad.8710/1
title: data_Houde_EA_2011

description: length, weight, family assignment
DOI: 10.5061/dryad.900/3
title: Supplementary Table 1

description: Expression and Classification Results
DOI: 10.5061/dryad.900/4
title: Raw Data

description: A .txt file containing all of the gene sequences used in probe design by Agilent, extracted from the Drosophila genome public release Version 3.0 (see http://www.fruitfly.org/sequence/release3genomic.shtml for latest version).
DOI: 10.5061/dryad.900/5
title: Gene Sequences
DOI: 10.5061/dryad.908/1
title: Codeml Results
DOI: 10.5061/dryad.908/2
title: DAVID Results By Bin
DOI: 10.5061/dryad.908/3
title: DAVID output  (top 5% dN/dS)
DOI: 10.5061/dryad.908/4
title: Human ancestry DAVID output
DOI: 10.5061/dryad.909/1
title: Mating Success in Ambush Bugs

description: Cross-sectional mating success data for Phymata americana in 2003 and 2004.  Sampling was conducted at the Koffler Scientific Reserve at Joker's Hill (S. Ontario, Canada)
DOI: 10.5061/dryad.933/1
title: Supplementary Figure 1
DOI: 10.5061/dryad.dt3s7/1
title: carter-houle-evol2011-description

description: This file contains descriptions of data column headings in other files. It is attached to each other file as a readme.
DOI: 10.5061/dryad.dt3s7/2
title: carter-houle-evol2011-U1

description: Data for the U1 line as described in the paper.
DOI: 10.5061/dryad.dt3s7/3
title: carter-houle-evol2011-U2

description: Data for the U2 line as described in the paper.
DOI: 10.5061/dryad.v52mq/1
title: behav_data_bitterling_gentes

description: data from behavioural experiment reported in the ms
DOI: 10.5061/dryad.v52mq/3
title: gentes microsats
DOI: 10.5061/dryad.8054/1
title: Microsatellite data on all 7 species described in the paper

description: Data are in Genalex format and include the microsatellite lengths.Different species can be found in different worksheets.CODE=unique individualSITE=fragment where the bird was caughtAll other columns are microsatellite lengths on different loci
DOI: 10.5061/dryad.8716/1
title: ML_threshold_indicator
DOI: 10.5061/dryad.8716/2
title: Probes_listed_by_genes
DOI: 10.5061/dryad.8720/1
title: dataset records

description: List of all 392 records in the dataset, including ones we failed to sequence.
DOI: 10.5061/dryad.8720/2
title: dataset sequences

description: All 322 sequences from the dataset.
DOI: 10.5061/dryad.933/2
title: Supplementary Figure 2
DOI: 10.5061/dryad.933/3
title: Supplementary Figure 3
DOI: 10.5061/dryad.933/4
title: Supplementary Figure 4
DOI: 10.5061/dryad.939/1
title: SNP Genotypes and Eye Phenotypes
DOI: 10.5061/dryad.939/2
title: Case-Control and TDT
DOI: 10.5061/dryad.939/3
title: Enhanced Methods
DOI: 10.5061/dryad.939/4
title: Supplementary Tables 1-3
DOI: 10.5061/dryad.962/1
title: Supplementary GenBank File

description: GenBank File 17571116 (Egfr Sequence)
DOI: 10.5061/dryad.dt3s7/4
title: carter-houle-evol2011-D1

description: Data for the D1 line as described in the paper.
DOI: 10.5061/dryad.dt3s7/5
title: carter-houle-evol2011-D2

description: Data for the D2 line as described in the paper.
DOI: 10.5061/dryad.1289/1
title: Hansen et al 2010 MEC.xlsx

description: Brown trout microsatellite data (61 loci). The data set consists of samples from three wild brown trout populations in Western Jutland, Denmark, along with samples from two hatchery strains used for stocking. The samples of wild trout populations consist of contemporary samples (2000-2006). Moreover, two of the populations are also represented by historical samples from 1943-1956. See Hansen et al. (2010) for further details. The data file is in MSA format [Dieringer D, Schlotterer C (2003) Microsatellite Analyser (msa): a platform independent analysis tool for large microsatellite data sets. Molecular Ecology Notes, 3, 167–169].
DOI: 10.5061/dryad.8720/3
title: host reference records

description: A selection of 153 records relevant to the dataset from the Lepidoptera reference library.
DOI: 10.5061/dryad.8720/4
title: host reference sequences

description: A selection of 153 sequences relevant to the dataset from the Lepidoptera reference library.
DOI: 10.5061/dryad.8720/5
title: parasitoid reference records

description: A selection of 329 records relevant to the dataset from the parasitoid reference library.
DOI: 10.5061/dryad.8720/6
title: parasitoid reference sequences

description: A selection of 329 sequences relevant to the dataset from the parasitoid reference library.
DOI: 10.5061/dryad.962/10
title: Supplementary Table 4

description: Length distribution of microsatellite alleles
DOI: 10.5061/dryad.962/11
title: Supplementary Table 5

description: Effect of sample size on estimation of Fst statistics
DOI: 10.5061/dryad.962/2
title: Supplementary Figure 1

description: Fu and Li’s D* statistic across the EGFR
DOI: 10.5061/dryad.962/3
title: Supplementary Table 6

description: Excel file with complete sequence of each of the alleles
DOI: 10.5061/dryad.962/4
title: Supplementary Figure 3

description: Conserved 30 bp sequence motif in D. melanogaster
DOI: 10.5061/dryad.962/5
title: Supplementary Figure 2

description: Polymorphism and Divergence in the CN repeat
DOI: 10.5061/dryad.962/6
title: Supplementary Figure 4

description: LD plot for all common polymorphisms
DOI: 10.5061/dryad.962/7
title: Supplementary Table 1

description: List of Primers used in sequencing
DOI: 10.5061/dryad.962/8
title: Supplementary Table 2

description: List of Amino Acid Replacement variants in DER
DOI: 10.5061/dryad.hm304/1
title: Microsatellite scores of Spongia officinalis, genetic diversity in the Mediterranean Sea
DOI: 10.5061/dryad.1fm3f/2
title: dryad.tar.bz2

description: This tarball consists of three main types of files. 1. library*.sorted.bam =&gt; These are the files that resulted from using Bowtie to map the trimmed reads in the seq/ dir to the the RGSC3.4 assembly. Also included are associated index (*.bai) files 2. assembleMito.fa =&gt; This is the assembly of the sequenced rat's mitochondrial genome resulting from de novo assembly of the reads using ABySS. 3. seq/ contains the reads trimmed for contamination, adapter, and low-quality as discussed in the publication. library5* is derived from the molar. library6* is derived from the toe. *_1_* reads are forward reads; *_2_* reads are reverse reads. Any reads that lost their mate-pair during the trimming process are not included here although they were used for mapping. These reads are available from S. Singhal upon request. Note: scripts used for analysis and other data are available from S. Singhal upon request.
DOI: 10.5061/dryad.8733/1
title: Czech Bird Data (managers: Reif and Vermouzek)

description: Abundance of breeding bird species counted two times in eight habitats in 2006-2008 within a large-scale breeding bird monitoring scheme covering the Czech Republic.
DOI: 10.5061/dryad.962/9
title: Supplementary Table 3

description: Effect of sample size on estimation of nucleotide diversity
DOI: 10.5061/dryad.963/1
title: Supplementary Data 1
DOI: 10.5061/dryad.963/2
title: Supplementary Data 2
DOI: 10.5061/dryad.963/3
title: Supplementary Table 3
DOI: 10.5061/dryad.963/4
title: Supplementary GenBank File
DOI: 10.5061/dryad.964/1
title: Supplementary Table 1
DOI: 10.5061/dryad.964/2
title: Supplementary Table 2
DOI: 10.5061/dryad.964/3
title: Supplementary Table 3
DOI: 10.5061/dryad.964/4
title: Supplementary File 4
DOI: 10.5061/dryad.ft5jj/1
title: Temperature-trials-data

description: Data collected in the laboratory, organized for survival analysis. Columns specify population,  larval instar, year of the trial, trial code, days since beginning of the trial (days 1-3 refer to heat treatment period; following days refer to post-treatment), state of each individual (1=dead, 0=censored), temperature and treatment/control groups.
DOI: 10.5061/dryad.j850j
title: Data from: Life at the top: rank and stress in wild male baboons