cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3635645_d4.v1
title: Additional file 4: Table S3. of A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes

description: Summary of known microRNAs. Number of sequence reads was determined with either counts from known microRNA sequence search (Seq search) or miRDeep output, using the highest number of reads for that sequence. Listed genomic locations for mature microRNA sequences are relative to RefSeq annotated transcripts in UCSC genome browser (hg38). For mature microRNA sequences spanning both introns and coding region, or UTR or coding of alternative transcripts, sequence is listed in coding region. Conservation to human (H), chimp (C), rhesus monkey (R), dog (D), mouse (M), and zebrafish (Z) are listed. Conservation of mature microRNA sequence indicates exact sequence alignment in listed species, allowing for up to one base mismatch outside of the microRNA seed sequence (nucleotides 2â  8), and no mismatches within the seed sequence. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3635645_d8.v1
title: Additional file 3: Table S2. of A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes

description: GATHER gene ontology categorization of top 500 expressed genes. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.c.3635645_d6.v1
title: Additional file 7: Table S6. of A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes

description: List of predicted targets for miR-4732-3p in Targetscan. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3635903_d2.v1
title: Additional file 2: Table S2. of Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)

description: Containing the dRNA-Seq results. Summary of all of the TSSs identified by the dRNA-Seq approach and the additional selected parameters, e.g., replicon, localization, strand, identification in the three datasets, TSS class, associated gene, and promoter score. The first Excel sheet contains the results, and the second Excel sheet contains a list of columns and definitions. (XLSX 572 kb)
DOI: 10.6084/m9.figshare.c.3635903_d1.v1
title: Additional file 1: Table S1. of Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)

description: Summarizing the statistics of sequencing and read mapping. For each of the six sequencing runs (three with, three without TEX treatment) the number of reads, the number of mapped reads, etc. are tabulated. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3635906_d1.v1
title: Additional file 4: Table S3. of Statistical inference of a convergent antibody repertoire response to influenza vaccine

description: Literature-curated dataset of flu-targeting Abs. (CSV 25 kb)
DOI: 10.6084/m9.figshare.c.3635906_d2.v1
title: Additional file 6: Table S5. of Statistical inference of a convergent antibody repertoire response to influenza vaccine

description: TIV-responding genes for each patient, B cell data. (CSV 3 kb)
DOI: 10.6084/m9.figshare.c.3635906_d4.v1
title: Additional file 9: Table S7. of Statistical inference of a convergent antibody repertoire response to influenza vaccine

description: Results for individual gene test for convergence, B cell data. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3635906_d6.v1
title: Additional file 5: Table S4. of Statistical inference of a convergent antibody repertoire response to influenza vaccine

description: P values for FPCA-based test. (CSV 19 kb)
DOI: 10.6084/m9.figshare.c.3635906_d7.v1
title: Additional file 7: Table S6. of Statistical inference of a convergent antibody repertoire response to influenza vaccine

description: TIV-responding genes for each patient, PBMC data. (CSV 3 kb)
DOI: 10.5281/zenodo.14510954
title: PB peat contigs-gene coverages
DOI: 10.5281/zenodo.14510955
title: PB peat contigs-gene coverages
DOI: 10.6084/m9.figshare.c.3635906_d8.v1
title: Additional file 10: Table S8. of Statistical inference of a convergent antibody repertoire response to influenza vaccine

description: Results for individual gene test for convergence, PBMC data. (CSV 4 kb)
DOI: 10.6084/m9.figshare.c.3636140_d3.v1
title: Additional file 2 of Assisted transcriptome reconstruction and splicing orthology

description: Results.tar. Compressed folder containing csv files listing the results. (GZ 3942 kb)
DOI: 10.5281/zenodo.14510797
title: PANDAX for industrial Question Answering with Explanation (QAE)

description: PANDAX (PAtent-based iNdustrial Dataset for Answers and eXplanations) is the first open-sourceindustrial QAE dataset (to our knowledge). These QAEs are derived from patents in PDF format focused on industrial systems in domains of cooling systems and green technology, such as renewable energy, carbon capture and storage. PANDAX contains 1860 QAE triples and covers three question topics of system information: partonomy, functionality, and parameters.
DOI: 10.5281/zenodo.14510798
title: PANDAX for industrial Question Answering with Explanation (QAE)

description: PANDAX (PAtent-based iNdustrial Dataset for Answers and eXplanations) is the first open-sourceindustrial QAE dataset (to our knowledge). These QAEs are derived from patents in PDF format focused on industrial systems in domains of cooling systems and green technology, such as renewable energy, carbon capture and storage. PANDAX contains 1860 QAE triples and covers three question topics of system information: partonomy, functionality, and parameters.
DOI: 10.6084/m9.figshare.28049816
title: dataset_4

description: Weighted attributes normalization, scaling
DOI: 10.6084/m9.figshare.28049816.v1
title: dataset_4

description: Weighted attributes normalization, scaling
DOI: 10.6084/m9.figshare.c.3636632_d2.v1
title: Additional file 2: Table S1. of Predicting the recurrence of noncoding regulatory mutations in cancer

description: Annotation of random forest input features. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3636650_d1.v1
title: Additional file 4: of Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

description: Enterobacteriaceae database files. (ZIP 132 kb)
DOI: 10.6084/m9.figshare.c.3636650_d2.v1
title: Additional file 3: of Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

description: Genus level abundances of Enterbacteriaceae. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3636650_d3.v1
title: Additional file 2: of Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

description: Preprocessing results of 16S rRNA sequences. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3636650_d4.v1
title: Additional file 1: of Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

description: Metadata for cilantro samples. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3636650_d5.v1
title: Additional file 5: of Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

description: High abundance classes among T0 samples. (XLSX 10 kb)
DOI: 10.5517/ccdc.csd.cc2k2p1d
title: CCDC 2356063: Experimental Crystal Structure Determination

description: Related Article: Yan Wang, Muliang Zhang, Shi-Kai Tian|2024|J.Org.Chem.|89|17853|doi:10.1021/acs.joc.4c02358
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccq897h
title: CCDC 663376: Experimental Crystal Structure Determination

description: Related Article: Xuhao Li, Manqi Zang, Lipeng Zhang, Wei Jiang, Xiuxian Zhao, Xuchuan Jiang, Wei Yao|2024|Organometallics|43|2862|doi:10.1021/acs.organomet.4c00295
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccq898j
title: CCDC 663377: Experimental Crystal Structure Determination

description: Related Article: Xuhao Li, Manqi Zang, Lipeng Zhang, Wei Jiang, Xiuxian Zhao, Xuchuan Jiang, Wei Yao|2024|Organometallics|43|2862|doi:10.1021/acs.organomet.4c00295
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3636665_d1.v1
title: Additional file 2: of Dispatch guideline adherence and response intervalâ  a study of emergency medical calls in Norway

description: Index-113calls work sheet, a data file supporting the conclusions of the article. (XLSX 64Â kb)
DOI: 10.5517/ccdc.csd.cc2khfj1
title: CCDC 2368323: Experimental Crystal Structure Determination

description: Related Article: Kalakonda Raga Chaitanya, Srinivas Ambala, Bheeshma Geetanjali Kodiripaka, Bathini Nagendra Babu|2024|New J.Chem.|48|19742|doi:10.1039/D4NJ04014G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2klwwy
title: CCDC 2371651: Experimental Crystal Structure Determination

description: Related Article: Sergey A. Kovalenko, Ekaterina S. Gulyaeva, Elena S. Osipova, Oleg A. Filippov, Anastasia A. Danshina, Laure Vendier, Nikolay V. Kireev, Ivan A. Godovikov, Yves Canac, Dmitry A. Valyaev, Natalia V. Belkova, Elena S. Shubina|2024|Dalton Trans.|54|122|doi:10.1039/D4DT02496F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2klwxz
title: CCDC 2371652: Experimental Crystal Structure Determination

description: Related Article: Sergey A. Kovalenko, Ekaterina S. Gulyaeva, Elena S. Osipova, Oleg A. Filippov, Anastasia A. Danshina, Laure Vendier, Nikolay V. Kireev, Ivan A. Godovikov, Yves Canac, Dmitry A. Valyaev, Natalia V. Belkova, Elena S. Shubina|2024|Dalton Trans.|54|122|doi:10.1039/D4DT02496F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2klwy0
title: CCDC 2371653: Experimental Crystal Structure Determination

description: Related Article: Sergey A. Kovalenko, Ekaterina S. Gulyaeva, Elena S. Osipova, Oleg A. Filippov, Anastasia A. Danshina, Laure Vendier, Nikolay V. Kireev, Ivan A. Godovikov, Yves Canac, Dmitry A. Valyaev, Natalia V. Belkova, Elena S. Shubina|2024|Dalton Trans.|54|122|doi:10.1039/D4DT02496F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k57mm
title: CCDC 2358530: Experimental Crystal Structure Determination

description: Related Article: Meysam Kakavand, Anna Kozakiewicz-Piekarz, Abdollah Neshat|2024|Dalton Trans.|53|18458|doi:10.1039/D4DT02825B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kyvds
title: CCDC 2382176: Experimental Crystal Structure Determination

description: Related Article: Yu-Xuan Zhang, Yi-Jie Ma, Yu-Jia Zhao, Zi-Yan Wang, Cai-Xia Yu, Xiao-Qiang Li, Lei-Lei Liu|2024|Inorg.Chem.Front.|11|8725|doi:10.1039/D4QI02343A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kqzx6
title: CCDC 2375589: Experimental Crystal Structure Determination

description: Related Article: Jingyi Ma, Zhihan Chang, Xue Xi, Juju Liang, Yuchun Lin, Yaling Zhu, Xiuli Wang|2024|Inorg.Chem.Front.|11|8925|doi:10.1039/D4QI02311K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2klc1l
title: CCDC 2371129: Experimental Crystal Structure Determination

description: Related Article: Nitu Rani, Aman K. K. Bhasin, Ahmad Husain, Annu Kumari, Reshu Verma, K. K. Bhasin, Girijesh Kumar|2024|CrystEngComm|26|6719|doi:10.1039/D4CE01050G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3636935_d1.v1
title: Additional file 1: of Prospective study of 158 adult scoliosis treated by a bivalve polyethylene overlapping brace and reviewed at least 5Â years after brace fitting

description: Excel spreadsheet with results of 158 patients. Data from the prospective database (age, Cobb, balance, follow up at the Beginning and last follow-up). (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3636941_d1.v1
title: Additional file 3: of NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets

description: Allele-specific length preference for 24 MHC molecules characterized by 20 or more ligand data points for the allmer and 9mer prediction methods compared to the length preference in the SYFPEITHI data. Length profiles for the allmer and 9mer methods were estimated as described in the text. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3636941_d2.v1
title: Additional file 1: of NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets

description: Predictive performance on different alleles and peptide lengths for the allmer and 9mer predictive methods. The two methods were trained as described in the text. The predictive performance was measured in terms of Pearsonâ  s correlation coefficient (PCC) and area under the ROC curve (AUC), the latter using a binding threshold of 500 nM. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.c.3636941_d3.v1
title: Additional file 2: of NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets

description: Predictive performance on different alleles and peptide lengths for the allmer and allmer-allele predictive methods. The two methods were trained as described in the text. The predictive performance was measured in terms of Pearsonâ  s correlation coefficient (PCC) and area under the ROC curve (AUC), the latter using a binding threshold of 500 nM. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3637172_d6.v1
title: Additional file 1: Table S1. of Graded gene expression changes determine phenotype severity in mouse models of CRX-associated retinopathies

description: Compiled comparison of RNAseq with new and previously published qPCR data. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3637172_d7.v1
title: Additional file 2: Table S2. of Graded gene expression changes determine phenotype severity in mouse models of CRX-associated retinopathies

description: Compiled list of read number for each library. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3637172_d8.v1
title: Additional file 19: Table S5. of Graded gene expression changes determine phenotype severity in mouse models of CRX-associated retinopathies

description: List of primers used for qRT-PCR completed for this manuscript. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3637172_d19.v1
title: Additional file 4: Figure S2. of Graded gene expression changes determine phenotype severity in mouse models of CRX-associated retinopathies

description: P10 (a) and P21 (b) browser shots of reads per million (RPM) normalized mapped read count for selected genes for each biological replicate show reproducibility of sequencing results between samples. (ZIP 312 kb)
DOI: 10.6084/m9.figshare.c.3637193_d1.v1
title: Additional file 6: Table S5. of Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum

description: Domain architecture, genetic organization and subcellular localization of A. brasilense CBG497 TCS components. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3637193_d4.v1
title: Additional file 5: Table S4. of Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum

description: Domain architecture, genetic organization and subcellular localization of A. brasilense Sp245 TCS components. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3637193_d5.v1
title: Additional file 4: Table S3. of Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum

description: Domain architecture, genetic organization and subcellular localization of Azospirillum sp. B510 TCS components. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.c.3637418_d2.v1
title: Additional file 3: of Spread and establishment of Aedes albopictus in southern Switzerland between 2003 and 2014: an analysis of oviposition data and weather conditions

description: Aedes albopictus presence in Canton Ticino (southern Switzerland) over the years. The file contains a series of maps for each year from 2003 to 2014. Each map shows for a particular year where ovitraps were positive or negative for Ae. albopictus eggs. A dot represents an ovitrap and is colour-coded according to its status; green indicates the trap was always negative, red shows that eggs were found at least once, purple indicates seasonal establishment (i.e. the trap was repeatedly positive over at least 3Â months), and blue indicates the overwintering (i.e. the trap was positive the last control round of a year and the first control round of the following one). Map layers were purchased from the Swiss Federal Office of Topography. (ZIP 20813Â kb)
DOI: 10.6084/m9.figshare.c.3637433_d1.v1
title: Additional file 1: of 
                     Mycobacterium tuberculosis causing tuberculous lymphadenitis in Maputo, Mozambique

description: Full description of MIRU-VNTR and spoligotyping analysis in this study. *Newly created 12, 15, or 24-MIRU International Types (MIT) were followed by an asterisk. Letters x, y, and z represent respectively MIRU-VNTR double alleles values of loci MIRU26, Mtub21, and Mtub30 (i.e. 7(+5), 5(+1), and 4(+2)). Letters A, B, C, and D, represent respectively MIRU-VNTR loci number of copies 10, 11, 12, and 13. **Mixed infection, Manu 2 isolate. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3637442_d1.v1
title: Additional file 1: Table S1. of Targeted high-throughput sequencing for genetic diagnostics of hemophagocytic lymphohistiocytosis

description: Coverage information for each amplicon. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.c.3637442_d5.v1
title: Additional file 7: Table S5. of Targeted high-throughput sequencing for genetic diagnostics of hemophagocytic lymphohistiocytosis

description: Monoallelic rare variants with in silico pathogenic predictions identified in the 1000 Genomes cohort. (XLSX 100 kb)
DOI: 10.6084/m9.figshare.c.3637442_d8.v1
title: Additional file 6: Table S4. of Targeted high-throughput sequencing for genetic diagnostics of hemophagocytic lymphohistiocytosis

description: Monoallelic rare variants with in silico pathogenic predictions identified in the patients without a definitive diagnosis. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3637445_d4.v1
title: Additional file 7: Table S2. of Positionally-conserved but sequence-diverged: identification of long non-coding RNAs in the Brassicaceae and Cleomaceae

description: Sheet 1 shows the transcript names of Aethionema arabicum, Tarenaya hassleriana and Arabidopsis thaliana and whether or not they are conserved by position or only by sequence across the different lineages. Sheet 2 shows the distances of the positionally conserved LncRNAs to the nearest end of A. thaliana chromosomes. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3637685_d2.v1
title: Additional file 1: of The influence of corticosteroid treatment on the outcome of influenza A(H1N1pdm09)-related critical illness

description: Appendix A (Table 5A. Unadjusted Clinical Outcomes among Critically Ill Patients with H1N1pdm09, Table 6A. Baseline Characteristics of Patients Matched by Propensity to Receive Corticosteroids among Critically Ill Patients with H1N1pdm09, Table 6B. Cointerventions Matched by Propensity to Receive Corticosteroids among Critically Ill Patients with H1N1pdm09, Table 6C. Outcome of Patients, Matched by Propensity to Receive Corticosteroids Among Critically Ill Patients with H1N1pdm09, Table 7A: Predictors of In-Hospital Mortality Using Adjustment for Baseline and Time-Dependent Between-Group Differences over the 4 Days of ICU Admission and Until Discharge From ICU Among Critically Ill Patients with H1N1pdm09) and Appendix B (Predictors of In-Hospital Mortality Among Critically Ill Patients with H1N1pdm09 Using Adjustment for Baseline and Time-Dependent Between-Group Differences) and Appendix C (Participating Hospitals) and Appendix D (Case Report Form). (ZIP 94 kb)