cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3219031
title: Tabela: Itens para a avaliação da aderência à diretriz de tratamento do tabagismo traduzidos para o português (tradução livre) do artigo de Abroms, Lee Westmaas, Bontemps-Jones, Ramani, & Mellerson (2013).

description: Tradução livre dos itens para a avaliação da aderência à diretriz de tratamento do tabagismo conforme o artigo de Abroms, Lee Westmaas, Bontemps-Jones, Ramani, & Mellerson (2013), utilizados para a classificação dos aplicativos para cessação do tabagismo avaliados no artigo <i>Revisão dos aplicativos de smartphones para cessação do tabagismo disponíveis em língua portuguesa</i> (Formagini, T.D.B., Ervilha, R.R., Machado, N.M., Andrade, B.A.B.B., Gomide, H.P., Ronzani T.M., no prelo)
DOI: 10.6084/m9.figshare.3219031.v1
title: Tabela: Itens para a avaliação da aderência à diretriz de tratamento do tabagismo traduzidos para o português (tradução livre) do artigo de Abroms, Lee Westmaas, Bontemps-Jones, Ramani, & Mellerson (2013).

description: Tradução livre dos itens para a avaliação da aderência à diretriz de tratamento do tabagismo conforme o artigo de Abroms, Lee Westmaas, Bontemps-Jones, Ramani, & Mellerson (2013), utilizados para a classificação dos aplicativos para cessação do tabagismo avaliados no artigo <i>Revisão dos aplicativos de smartphones para cessação do tabagismo disponíveis em língua portuguesa</i> (Formagini, T.D.B., Ervilha, R.R., Machado, N.M., Andrade, B.A.B.B., Gomide, H.P., Ronzani T.M., no prelo)
DOI: 10.6084/m9.figshare.3219025
title: Data for "Bone-associated gene evolution and the origin of flight in birds"

description: The data contained in them pretains to the manuscript: <br>Machado, JP, Johnson, WE, Gilbert, MTP, Zhang, G, Jarvis, ED, O’Brien, SJ, & Antunes, A (2016). Bone-associated gene evolution and the origin of flight in birds. BMC genomics, 17(1), 1.<br>4 zip files:<br><b>1) Codeml site models:</b> gene alignments, tree, parameters template.<br><b>2) Codeml branch models:</b> gene alignments, tree, parameters template, results from Codeml.<br><b>3) Codeml branch-site models:</b> gene alignments, tree, parameters template, results from Codeml. <br><b>4) CoEvol:</b> input files and results.<br>
DOI: 10.6084/m9.figshare.3218968
title: Physical validation - glass slides

description: Simulation of real conditions (red dots and approximation black line) with the experimental results (blue dots) marked on it. Simulated objects are shown in red footnotes. Objects and cross-section of correlations are shown in blue footnotes. Typical particle size D ≈ 100 μm; Δz = 1.5 mm; Т = 0%; N = 4; X x Y = 2.151 x 2.151 mm2; λ = 532 nm.
DOI: 10.6084/m9.figshare.3218971
title: A new <sup>40</sup>Ar/<sup>39</sup>Ar eruption age for the Mount Widderin volcano, Newer Volcanic Province, Australia, with implications for eruption frequency in the region

description: The Mount Widderin shield volcano is located near Skipton, western Victoria, in the Western Plains subprovince of the monogenetic Pliocene–Holocene Newer Volcanic Province (NVP). Radiometric ages for lavas in the Hamilton–Skipton–Derrinallum area are few, owing to limited suitable outcrop for K–Ar or <sup>40</sup>Ar/<sup>39</sup>Ar geochronology studies. Existing age constraints for flows in this area have been inferred from Regolith Landform Units (RLUs), complemented by a small number of K–Ar studies on ≥1 Ma flows. Although the RLU approach provides a valuable overview of relative eruption ages across the NVP, it is of limited use in eruption frequency studies. Additional radio-isotopic ages are required to refine age ranges for individual RLUs, and to validate previous assignment of individual flows to specific RLUs. We report a new, high-precision <sup>40</sup>Ar/<sup>39</sup>Ar age of 389 ± 8 ka (2σ) for a Mount Widderin basalt sample. Based on this age and geomorphic observations, we propose that both the Widderin and Elephant lava flows be reassigned from the Eccles RLU to the Rouse RLU. We use the 389 ± 8 ka (2σ) age for Widderin, along with published K–Ar ages, to anchor a stratigraphic sequence of 15 individual flows in the Hamilton–Skipton–Derrinallum area, demonstrating that intermittent volcanism has occurred in this area from ≥3 Ma to ≤0.389 Ma. Within the limits of available data for the NVP, this time span of volcanic activity is second only to that of the Melbourne area. We consider the significance of the Widderin eruption age, in conjunction with published age constraints for maars and scoria cones of the Western Plains subprovince, building on previous studies that have focused solely on lava flow ages. The inclusion of the additional data weakens the argument for a decrease in volcanic activity after <i>ca</i> 0.9 Ma as implied by published ages for lava flows only. Additional detailed combined geochronology–geomorphology studies of lavas, scoria cones and maars in strategically selected small areas are advocated to better understand eruption frequency across the NVP.
DOI: 10.6084/m9.figshare.3218980
title: Physical validation - iron filings

description: Simulation of real conditions (red dots and approximation black line) with the experimental results (blue dots) marked on it. Simulated objects are shown in red footnotes. Objects and cross-section of correlations are shown in blue footnotes. Enlarged images of the objects are shown in blue circles, where the focused particles are marked. Particles are considered to be completely opaque, typical particle size D ≈ 60 μm; Δz = 60 μm; Т = 0%; N ≈ 167; X x Y = 10.12 x 10.12 mm2; λ = 650 nm. N has been chosen based on the cuvette size and the volume partition rank.<br>
DOI: 10.6084/m9.figshare.3219025.v1
title: Bone-associated in birds

description: The data contained in them pretains to the manuscript: <br>Machado, JP, Johnson, WE, Gilbert, MTP, Zhang, G, Jarvis, ED, O’Brien, SJ, & Antunes, A (2016). Bone-associated gene evolution and the origin of flight in birds. BMC genomics, 17(1), 1.<br>4 zip files:<br><b>1) Codeml site models:</b> gene alignments, tree, parameters template.<br><b>2) Codeml branch models:</b> gene alignments, tree, parameters template, results from Codeml.<br><b>3) Codeml branch-site models:</b> gene alignments, tree, parameters template, results from Codeml. <br><b>4) CoEvol:</b> input files and results.<br>
DOI: 10.6084/m9.figshare.3218971.v1
title: A new <sup>40</sup>Ar/<sup>39</sup>Ar eruption age for the Mount Widderin volcano, Newer Volcanic Province, Australia, with implications for eruption frequency in the region

description: The Mount Widderin shield volcano is located near Skipton, western Victoria, in the Western Plains subprovince of the monogenetic Pliocene–Holocene Newer Volcanic Province (NVP). Radiometric ages for lavas in the Hamilton–Skipton–Derrinallum area are few, owing to limited suitable outcrop for K–Ar or <sup>40</sup>Ar/<sup>39</sup>Ar geochronology studies. Existing age constraints for flows in this area have been inferred from Regolith Landform Units (RLUs), complemented by a small number of K–Ar studies on ≥1 Ma flows. Although the RLU approach provides a valuable overview of relative eruption ages across the NVP, it is of limited use in eruption frequency studies. Additional radio-isotopic ages are required to refine age ranges for individual RLUs, and to validate previous assignment of individual flows to specific RLUs. We report a new, high-precision <sup>40</sup>Ar/<sup>39</sup>Ar age of 389 ± 8 ka (2σ) for a Mount Widderin basalt sample. Based on this age and geomorphic observations, we propose that both the Widderin and Elephant lava flows be reassigned from the Eccles RLU to the Rouse RLU. We use the 389 ± 8 ka (2σ) age for Widderin, along with published K–Ar ages, to anchor a stratigraphic sequence of 15 individual flows in the Hamilton–Skipton–Derrinallum area, demonstrating that intermittent volcanism has occurred in this area from ≥3 Ma to ≤0.389 Ma. Within the limits of available data for the NVP, this time span of volcanic activity is second only to that of the Melbourne area. We consider the significance of the Widderin eruption age, in conjunction with published age constraints for maars and scoria cones of the Western Plains subprovince, building on previous studies that have focused solely on lava flow ages. The inclusion of the additional data weakens the argument for a decrease in volcanic activity after <i>ca</i> 0.9 Ma as implied by published ages for lava flows only. Additional detailed combined geochronology–geomorphology studies of lavas, scoria cones and maars in strategically selected small areas are advocated to better understand eruption frequency across the NVP.
DOI: 10.6084/m9.figshare.3218959
title: Basic peak-to-basement dependence on Cn - 2

description: Dependence of p/b on the normalized concentration Cn of the particles in the volume. Footnotes indicate the particle distributions, for which the correlation is calculated. D = 0.072 mm, Δz = 0.072 mm, Т = 0%. Correlations are calculated for the 1st and 2nd layers. Screen sizes 3.072 x 3.072 mm2, λ = 632.8 nm
DOI: 10.6084/m9.figshare.3218968.v2
title: Physical validation - glass slides

description: Simulation of real conditions (red dots and approximation black line) with the experimental results (blue dots) marked on it. Simulated objects are shown in red footnotes. Objects and cross-section of correlations are shown in blue footnotes. Typical particle size D ≈ 100 μm; Δz = 1.5 mm; Т = 0%; N = 4; X x Y = 2.151 x 2.151 mm2; λ = 532 nm.
DOI: 10.6084/m9.figshare.3218968.v1
title: Expvalidation-1.png

description: Simulation of real conditions (red dots and approximation black line) with the experimental results (blue dots) marked on it. Simulated objects are shown in red footnotes. Objects and cross-section of correlations are shown in blue footnotes. Typical particle size D ≈ 100 μm; Δz = 1.5 mm; Т = 0%; N = 4; X x Y = 2.151 x 2.151 mm2; λ = 532 nm.
DOI: 10.6084/m9.figshare.3218980.v1
title: Expvalidation-2.png

description: Simulation of real conditions (red dots and approximation black line) with the experimental results (blue dots) marked on it. Simulated objects are shown in red footnotes. Objects and cross-section of correlations are shown in blue footnotes. Enlarged images of the objects are shown in blue circles, where the focused particles are marked. Particles are considered to be completely opaque, typical particle size D ≈ 60 μm; Δz = 60 μm; Т = 0%; N ≈ 167; X x Y = 10.12 x 10.12 mm2; λ = 650 nm. N has been chosen based on the cuvette size and the volume partition rank.<br>
DOI: 10.6084/m9.figshare.3219025.v2
title: Bone-associated gene evolution in birds

description: The data contained in them pretains to the manuscript: <br>Machado, JP, Johnson, WE, Gilbert, MTP, Zhang, G, Jarvis, ED, O’Brien, SJ, & Antunes, A (2016). Bone-associated gene evolution and the origin of flight in birds. BMC genomics, 17(1), 1.<br>4 zip files:<br><b>1) Codeml site models:</b> gene alignments, tree, parameters template.<br><b>2) Codeml branch models:</b> gene alignments, tree, parameters template, results from Codeml.<br><b>3) Codeml branch-site models:</b> gene alignments, tree, parameters template, results from Codeml. <br><b>4) CoEvol:</b> input files and results.<br>
DOI: 10.6084/m9.figshare.3218959.v2
title: Basic peak-to-basement dependence on Cn - 2

description: Dependence of p/b on the normalized concentration Cn of the particles in the volume. Footnotes indicate the particle distributions, for which the correlation is calculated. D = 0.072 mm, Δz = 0.072 mm, Т = 0%. Correlations are calculated for the 1st and 2nd layers. Screen sizes 3.072 x 3.072 mm2, λ = 632.8 nm
DOI: 10.6084/m9.figshare.3218947
title: Correlation dependency on sizes

description: Particle suspensions (a, b, c) with Δz = 0.15 mm, N = 3, Np = 10, Т = 0% and their correlations (d, e, f), calculated for the 1st and 2nd layers. Sizes of the screen 3.072 x 3.072 mm2, λ = 632.8 nm. The peak is broadening due to an increase of the particle size.
DOI: 10.6084/m9.figshare.3218953
title: Gaussian particle distribution along optical axis investigation

description: p/b behavior investigation with normal distribution of the number of particles Np in each layer Ni by the number index of layer i. Object parameters (a): screen size 3.072 x 3.072 mm2, λ = 632.8 nm, Δz = 0.054 mm, N = 101, D = 0.054 mm, T = 0%. Discrete normal distribution (b) of the number of particles Np in the order of layers i. A typical dependence (c) of the p/b, calculated for i and i+1 layers of volume, on the layer number i
DOI: 10.6084/m9.figshare.3218956
title: Basic peak-to-basement dependence on Cn - 1

description: Dependence of p/b on the normalized concentration Cn of the particles in the volume. Footnotes indicate the particle distributions, for which the correlation is calculated. D = 0.054 mm, Δz = 0.054 mm, Т = 0%. Correlations are calculated for the 1st and 2nd layers. Screen sizes 3.072 x 3.072 mm2, λ = 632.8 nm.
DOI: 10.6084/m9.figshare.3218959.v1
title: Base-2.png

description: Dependence of p/b on the normalized concentration Cn of the particles in the volume. Footnotes indicate the particle distributions, for which the correlation is calculated. D = 0.072 mm, Δz = 0.072 mm, Т = 0%. Correlations are calculated for the 1st and 2nd layers. Screen sizes 3.072 x 3.072 mm2, λ = 632.8 nm
DOI: 10.6084/m9.figshare.3218944
title: Correlation dependency on transparency

description: Particle suspensions (a, b, c) with Δz = 0.15 mm, N = 100, Np = 5 and their correlations (d, e, f), calculated for the 1st and 2nd layers. Sizes of the screen 3.072 x 3.072 mm2, λ = 632.8 nm. With the decrease of the particles transparency, p/b ratio also grows and the peak stands out from the basement.
DOI: 10.6084/m9.figshare.3218956.v2
title: Basic peak-to-basement dependence on Cn - 1

description: Dependence of p/b on the normalized concentration Cn of the particles in the volume. Footnotes indicate the particle distributions, for which the correlation is calculated. D = 0.054 mm, Δz = 0.054 mm, Т = 0%. Correlations are calculated for the 1st and 2nd layers. Screen sizes 3.072 x 3.072 mm2, λ = 632.8 nm.
DOI: 10.6084/m9.figshare.3218938
title: Correlation dependency on concentration

description: Particle suspensions (a, b, c) with Δz = 0.15 mm, D = 0.054 mm, N = 10, Т = 0% and correlations (d, e, f), calculated for the 1st and 2nd layers. Sizes of the screen 3.072 x 3.072 mm2, λ = 632.8 nm. p/b ratio is growing with the increase of normalized correlation.
DOI: 10.6084/m9.figshare.3218944.v2
title: Correlation dependency on transparency

description: Particle suspensions (a, b, c) with Δz = 0.15 mm, N = 100, Np = 5 and their correlations (d, e, f), calculated for the 1st and 2nd layers. Sizes of the screen 3.072 x 3.072 mm2, λ = 632.8 nm. With the decrease of the particles transparency, p/b ratio also grows and the peak stands out from the basement.
DOI: 10.6084/m9.figshare.3218947.v2
title: Correlation dependency on sizes

description: Particle suspensions (a, b, c) with Δz = 0.15 mm, N = 3, Np = 10, Т = 0% and their correlations (d, e, f), calculated for the 1st and 2nd layers. Sizes of the screen 3.072 x 3.072 mm2, λ = 632.8 nm. The peak is broadening due to an increase of the particle size.
DOI: 10.6084/m9.figshare.3218956.v1
title: Base-1.png

description: Dependence of p/b on the normalized concentration Cn of the particles in the volume. Footnotes indicate the particle distributions, for which the correlation is calculated. D = 0.054 mm, Δz = 0.054 mm, Т = 0%. Correlations are calculated for the 1st and 2nd layers. Screen sizes 3.072 x 3.072 mm2, λ = 632.8 nm.
DOI: 10.6084/m9.figshare.3218947.v1
title: Size.png

description: Particle suspensions (a, b, c) with Δz = 0.15 mm, N = 3, Np = 10, Т = 0% and their correlations (d, e, f), calculated for the 1st and 2nd layers. Sizes of the screen 3.072 x 3.072 mm2, λ = 632.8 nm. The peak is broadening due to an increase of the particle size.
DOI: 10.6084/m9.figshare.3218953.v1
title: Gaussiandist.png

description: p/b behavior investigation with normal distribution of the number of particles Np in each layer Ni by the number index of layer i. Object parameters (a): screen size 3.072 x 3.072 mm2, λ = 632.8 nm, Δz = 0.054 mm, N = 101, D = 0.054 mm, T = 0%. Discrete normal distribution (b) of the number of particles Np in the order of layers i. A typical dependence (c) of the p/b, calculated for i and i+1 layers of volume, on the layer number i
DOI: 10.6084/m9.figshare.3218938.v2
title: Correlation dependency on concentration

description: Particle suspensions (a, b, c) with Δz = 0.15 mm, D = 0.054 mm, N = 10, Т = 0% and correlations (d, e, f), calculated for the 1st and 2nd layers. Sizes of the screen 3.072 x 3.072 mm2, λ = 632.8 nm. p/b ratio is growing with the increase of normalized correlation.
DOI: 10.6084/m9.figshare.3218944.v1
title: Transpar.png

description: Particle suspensions (a, b, c) with Δz = 0.15 mm, N = 100, Np = 5 and their correlations (d, e, f), calculated for the 1st and 2nd layers. Sizes of the screen 3.072 x 3.072 mm2, λ = 632.8 nm. With the decrease of the particles transparency, p/b ratio also grows and the peak stands out from the basement.
DOI: 10.6084/m9.figshare.3218938.v1
title: Conc.png

description: Particle suspensions (a, b, c) with Δz = 0.15 mm, D = 0.054 mm, N = 10, Т = 0% and correlations (d, e, f), calculated for the 1st and 2nd layers. Sizes of the screen 3.072 x 3.072 mm2, λ = 632.8 nm. p/b ratio is growing with the increase of normalized correlation.
DOI: 10.6084/m9.figshare.3218866
title: Reduction of Candida tropicalis biofilm by photoactivation of aHeterophyllaea pustulata extract

description: In this file, we provide supplemental information that guarantees results discussed in our published work: Reduction of <i>Candida tropicalis</i> biofilm by photoactivation of a <i>Heterophyllaea pustulata</i> extract. The DOI of our paper is: 10.1080/13880209.2016.1183683. Once our article has published online, it will be available at the following permanent link:http://dx.doi.org/10.1080/13880209.2016.1183683 .
DOI: 10.6084/m9.figshare.3218857
title: Deciphering the cause of evolutionary variance within intrinsically disordered regions in human proteins

description: Why the intrinsically disordered regions evolve within human proteome has became an interesting question for a decade. Till date, it remains an unsolved yet an intriguing issue to investigate why some of the disordered regions evolve rapidly while the rest are highly conserved across mammalian species. Identifying the key biological factors, responsible for the variation in the conservation rate of different disordered regions within the human proteome, may revisit the above issue. We emphasized that among the other biological features (multifunctionality, gene essentiality, protein connectivity, number of unique domains, gene expression level and expression breadth) considered in our study, the number of unique protein domains acts as a strong determinant that negatively influences the conservation of disordered regions. In this context, we justified that proteins having a fewer types of domains preferably need to conserve their disordered regions to enhance their structural flexibility which in turn will facilitate their molecular interactions. In contrast, the selection pressure acting on the stretches of disordered regions is not so strong in the case of multi-domains proteins. Therefore, we reasoned that the presence of conserved disordered stretches may compensate the functions of multiple domains within a single domain protein. Interestingly, we noticed that the influence of the unique domain number and expression level acts differently on the evolution of disordered regions from that of well-structured ones.
DOI: 10.6084/m9.figshare.3218851
title: Out of Tibet: an early sheep from the Pliocene of Tibet, <i>Protovis himalayensis</i>, genus and species nov. (Bovidae, Caprini), and origin of Ice Age mountain sheep

description: Modern wild sheep, <i>Ovis</i>, is widespread in the mountain ranges of the Caucasus through Himalaya, Tibetan Plateau, Tianshan-Altai, eastern Siberia, and the Rocky Mountains in North America. In Eurasia, fossil sheep are known at a few Pleistocene sites in North China, eastern Siberia, and western Europe, but are so far absent from the Tibetan Plateau. We describe an extinct sheep, <i>Protovis himalayensis</i>, gen. et sp. nov., from the Pliocene of the Zanda Basin in western Himalaya. Smaller than the living argali, this new form shares with <i>Ovis</i> posterolaterally arched horncores and partially developed sinuses and possesses several transitional characters leading to <i>Ovis. Protovis</i> likely subsisted on C<sub>3</sub> plants, which are the dominant vegetation in the Zanda area during the Pliocene. With the discovery of this new genus and species, we extend the fossil record for the sheep clade into the Pliocene of the Tibetan Plateau, consistent with our previous out-of-Tibet hypothesis. Ancestral sheep in the Pliocene were presumed adapted to high altitude and cold environments, and during the Ice Age, sheep became anatomically modern and dispersed outside of the Tibetan Plateau. Both this new fossil datum and the existing molecular phylogeny suggest that the Tibetan Plateau, possibly including Tianshan-Altai, represents the ancestral home range(s) of mountain sheep and that these basal stocks were the ultimate source of all extant species. Most sheep species survived along their Pleistocene route of dispersal, offering a highly consistent pattern of zoogeography. http://zoobank.org/urn:lsid:zoobank.org:pub:F2AEE746-0A5B-4F40-89B7-8EF0C04F21FD SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Wang, X., Q. Li, and G. T. Takeuchi. 2016. Out of Tibet: an early sheep from the Pliocene of Tibet, <i>Protovis himalayensis</i>, gen. et sp. nov. (Bovidae, Caprini), and origin of Ice Age mountain sheep. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2016.1169190.