cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc20pj8j
title: CCDC 1867727: Experimental Crystal Structure Determination

description: Related Article: Ayuk M. Ako, Amal Cherian Kathalikkattil, Rory Elliott, Joaquín Soriano-López, Ian M. McKeogh, Muhammad Zubair, Nianyong Zhu, Max García-Melchor, Paul E. Kruger, Wolfgang Schmitt|2020|Inorg.Chem.|59|14432|doi:10.1021/acs.inorgchem.0c02182
DOI: 10.5517/ccdc.csd.cc20pj9k
title: CCDC 1867728: Experimental Crystal Structure Determination

description: Related Article: Ayuk M. Ako, Amal Cherian Kathalikkattil, Rory Elliott, Joaquín Soriano-López, Ian M. McKeogh, Muhammad Zubair, Nianyong Zhu, Max García-Melchor, Paul E. Kruger, Wolfgang Schmitt|2020|Inorg.Chem.|59|14432|doi:10.1021/acs.inorgchem.0c02182
DOI: 10.25386/genetics.13182986
title: Supplemental Material for Noshay et al., 2020

description: Transposable elements (TEs) have the potential to create regulatory variation both through disruption of existing DNA regulatory elements and through creation of novel DNA regulatory elements. In a species with a large genome, such as maize, the many TEs interspersed with genes creates opportunities for significant allelic variation due to TE presence/absence polymorphisms among individuals. We used information on putative regulatory elements in combination with knowledge about TE polymorphisms in maize to identify TE insertions that interrupt existing accessible chromatin regions (ACRs) in B73 as well as examples of polymorphic TEs that contain ACRs among four inbred lines of maize including B73, Mo17, W22, and PH207. The TE insertions in three other assembled maize genomes (Mo17, W22 or PH207) that interrupt ACRs that are present in the B73 genome can trigger changes to the chromatin suggesting the potential for both genetic and epigenetic influences of these insertions. Nearly 20% of the ACRs located over 2kb from the nearest gene are located within an annotated TE. These are regions of unmethylated DNA that show evidence for functional importance similar to ACRs that are not present within TEs. Using a large panel of maize genotypes we tested if there is an association between the presence of TE insertions that interrupt, or carry, an ACR and the expression of nearby genes. While most TE polymorphisms are not associated with expression for nearby genes the TEs that carry ACRs exhibit an enrichment for being associated with higher expression of nearby genes, suggesting that these TEs may contribute novel regulatory elements. These analyses highlight the potential for a subset of TEs to rewire transcriptional responses in eukaryotic genomes.
DOI: 10.25386/genetics.13182986.v1
title: Supplemental Material for Noshay et al., 2020

description: Transposable elements (TEs) have the potential to create regulatory variation both through disruption of existing DNA regulatory elements and through creation of novel DNA regulatory elements. In a species with a large genome, such as maize, the many TEs interspersed with genes creates opportunities for significant allelic variation due to TE presence/absence polymorphisms among individuals. We used information on putative regulatory elements in combination with knowledge about TE polymorphisms in maize to identify TE insertions that interrupt existing accessible chromatin regions (ACRs) in B73 as well as examples of polymorphic TEs that contain ACRs among four inbred lines of maize including B73, Mo17, W22, and PH207. The TE insertions in three other assembled maize genomes (Mo17, W22 or PH207) that interrupt ACRs that are present in the B73 genome can trigger changes to the chromatin suggesting the potential for both genetic and epigenetic influences of these insertions. Nearly 20% of the ACRs located over 2kb from the nearest gene are located within an annotated TE. These are regions of unmethylated DNA that show evidence for functional importance similar to ACRs that are not present within TEs. Using a large panel of maize genotypes we tested if there is an association between the presence of TE insertions that interrupt, or carry, an ACR and the expression of nearby genes. While most TE polymorphisms are not associated with expression for nearby genes the TEs that carry ACRs exhibit an enrichment for being associated with higher expression of nearby genes, suggesting that these TEs may contribute novel regulatory elements. These analyses highlight the potential for a subset of TEs to rewire transcriptional responses in eukaryotic genomes.
DOI: 10.34740/kaggle/dsv/1622349
title: BART Ridership
DOI: 10.6084/m9.figshare.6863765
title: Description of the microbiota in epidermal mucus and skin of sharks (Ginglymostoma cirratum and Negaprion brevirostris) and one stingray (Hypanus americanus)

description: This dataset consiste of raw DNA sequences from microbial 16s RNA amplified from DNA extracted from skin and mucus from two species of sharks and one species of stingray. It was sequenced using the Ion Torrent platform. It consists of .bam files.
DOI: 10.6084/m9.figshare.13173182
title: MSMS Human Kidney Stone Datasheet

description: Proteins identified in calcium oxalate monohydrate stone powder and LMD sections. Samples were derived from human stone patients. <br>
DOI: 10.6084/m9.figshare.13194803
title: PPC data - time-shuffled - encoding

description: This dataset belongs to the Collection:<br>ter Wal, Marije; Linde Domingo, Juan; Lifanov, Julia; Roux, Frederic; Kolibius, Luca; Gollwitzer, Stephanie; et al. (2020): Data for: Theta rhythmicity governs the timing of behavioural and hippocampal responses in humans specifically during memory-dependent tasks. figshare. Collection. https://doi.org/10.6084/m9.figshare.c.5192567<br><br><br>The dataset contains the following data:<br>Time-shuffled PPC data (100 repetitions) from hippocampal microwire recordings from 10 iEEG patients while they performed the encoding phase of a memory task.<br>The PPC data have been fully anonymized to protect the identity of the patients: information that could reveal the implantation scheme of specific patients has been removed. To this end, the original channel labels have been removed and replaced by bundle IDs.<br>For more details about the data please see the Collection.<br><br>
DOI: 10.6084/m9.figshare.13194803.v1
title: PPC data - time-shuffled - encoding

description: This dataset belongs to the Collection:<br>ter Wal, Marije; Linde Domingo, Juan; Lifanov, Julia; Roux, Frederic; Kolibius, Luca; Gollwitzer, Stephanie; et al. (2020): Data for: Theta rhythmicity governs the timing of behavioural and hippocampal responses in humans specifically during memory-dependent tasks. figshare. Collection. https://doi.org/10.6084/m9.figshare.c.5192567<br><br><br>The dataset contains the following data:<br>Time-shuffled PPC data (100 repetitions) from hippocampal microwire recordings from 10 iEEG patients while they performed the encoding phase of a memory task.<br>The PPC data have been fully anonymized to protect the identity of the patients: information that could reveal the implantation scheme of specific patients has been removed. To this end, the original channel labels have been removed and replaced by bundle IDs.<br>For more details about the data please see the Collection.<br><br>
DOI: 10.6084/m9.figshare.13169621
title: PPC data

description: This dataset belongs to the Collection: <br>ter Wal, Marije; Linde Domingo, Juan; Lifanov, Julia; Roux, Frederic; Kolibius, Luca; Gollwitzer, Stephanie; et al. (2020): Data for: Theta rhythmicity governs the timing of behavioural and hippocampal responses in humans specifically during memory-dependent tasks. figshare. Collection. https://doi.org/10.6084/m9.figshare.c.5192567<br><br><br>The dataset contains the following data:<br>PPC data from hippocampal microwire recordings from 10 iEEG patients while they performed a memory task.<br>The PPC data have been fully anonymized to protect the identity of the patients: information that could reveal the implantation scheme of specific patients has been removed. To this end, the original channel labels have been removed and replaced by bundle IDs. <br>For more details about the data please see the Collection.<br><br>
DOI: 10.17632/3wb7sztrrb.1
title: Data for: A Method to Minimise the Impact of ECG Marker Inaccuracies on the Spatial QRS-T angle: Evaluation on 1,512 Manually Annotated ECGs

description: Algorithm for robust and accurate estimation of QRS-T angle metrics
DOI: 10.17632/h4s329z7t8.1
title: Data for: Fluoride-free Synthesis of Mesoporous [Al]-[B]-ZSM-5 using Cetyltrimethylammonium Bromide and Methanol-to-Olefin Activity with High Propene Selectivity

description: The reaction data conducted at 450 oC with various ZSM-5 catalysts
DOI: 10.5517/ccdc.csd.cc236b2r
title: CCDC 1942493: Experimental Crystal Structure Determination

description: Related Article: Shi Linlin|2019|CSD Communication|||
description: Related Article: Ya-Gai Wang, Jing Li, Xiao-Die Wang, Linlin Shi, Xinju Zhu, Xin-Qi Hao, Mao-Ping Song|2020|J.Saudi Chem.Soc.|24|850|doi:10.1016/j.jscs.2020.09.001
DOI: 10.5517/ccdc.csd.cc236b7x
title: CCDC 1942498: Experimental Crystal Structure Determination

description: Related Article: Ya-Gai Wang, Jing Li, Xiao-Die Wang, Linlin Shi, Xinju Zhu, Xin-Qi Hao, Mao-Ping Song|2020|J.Saudi Chem.Soc.|24|850|doi:10.1016/j.jscs.2020.09.001
description: Related Article: Shi Linlin|2019|CSD Communication|||
DOI: 10.21227/79dg-4905
title: Test4

description: test4
DOI: 10.34740/kaggle/dsv/1622522
title: IPL 2020 Data
DOI: 10.3886/e104660v1-7322
title: Tax Revenues and the Fiscal Cost of Trade Liberalization, 1792-2006

description: This project includes the databases and stata code used used in the following publication:<br>CagÃ©, Julia and Lucie Gadenne (2018): "Tax Revenues and the Fiscal Cost of Trade Liberalization, 1792-2006."<br>
DOI: 10.17608/k6.auckland.13184975
title: Disturbance-recovery dynamics of seafloor communities

description: <i>This study was designed to evaluate the effects of shell debris on disturbance-recovery dynamics of macroinvertebrate animals inhabiting intertidal soft-sediments. We developed an experiment to test the effects of shell debris on the early colonization of macroinvertebrates along a gradient of increasing mud (a key stressor in coastal marine ecosystems) in the Okura Estuary, North Island, New Zealand (36°40'1.70"S/174°43'42.70"E). Twelve sites were established, tens of meters apart, at the mid-intertidal level that encompassed the mud-sand gradient (from 2-25 % mud). Defaunated sediment trays with and without shell debris were placed in each site (three replicates of each experimental treatment). Sediment samples from the background landscape and recolonization trays were collected after 14 days and macrofaunal abundances and composition were assessed and compared.</i>
DOI: 10.17608/k6.auckland.13184975.v1
title: Disturbance-recovery dynamics of seafloor communities

description: <i>This study was designed to evaluate the effects of shell debris on disturbance-recovery dynamics of macroinvertebrate animals inhabiting intertidal soft-sediments. We developed an experiment to test the effects of shell debris on the early colonization of macroinvertebrates along a gradient of increasing mud (a key stressor in coastal marine ecosystems) in the Okura Estuary, North Island, New Zealand (36°40'1.70"S/174°43'42.70"E). Twelve sites were established, tens of meters apart, at the mid-intertidal level that encompassed the mud-sand gradient (from 2-25 % mud). Defaunated sediment trays with and without shell debris were placed in each site (three replicates of each experimental treatment). Sediment samples from the background landscape and recolonization trays were collected after 14 days and macrofaunal abundances and composition were assessed and compared.</i>
DOI: 10.17632/t5jwbyyj4z.1
title: Data for: Resource Distribution with the Unbalanced Global Development

description: Original data
DOI: 10.5281/zenodo.4248173
title: Supporting-data 2020WR029174

description: This supporting data is only used for the paper (No. 2020WR029174) which may publish in WRR.
DOI: 10.5281/zenodo.4248172
title: Supporting-data 2020WR029174

description: This supporting data is only used for the paper (No. 2020WR029174) which may publish in WRR.
DOI: 10.5519/qd.cs6dfeu6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.21227/5mvy-mp06
title: Model 2.13

description: Model 2.12 Clustered-meter average monthly ratios Monthly (kWh) consumption clustering: 1. Twelve clustering models (one per month of signup): Sub-space euclidean Gaussian Mixture Models (GMM) clustering.2. Clustering using (daily kWh) consumption extracted features. Cluster count set to 2-6: Adjusted (with penalty term for cluster count un-evenness) silhouette index choses the cluster count. Forecasting for a meter: Using the mean monthly consumption + in-cluster month-to-month ratios. Clustering Features (170) from weekend/weekday and full series:- Statistical: median, variance, quantiles, ...- Time-series: autocorrelations, trends, seasonalities, ...- Dimensionality reduction: 20 components of Uniform Manifold Approximation and Projection (UMAP).- Normalization: zero mean, STDEV 1 standardization.
DOI: 10.17632/8rmkgj27ch.1
title: Data for: Constraints on the ages of the crystalline basement and Palaeozoic cover exposed in the Cordillera Real, Ecuador: 40Ar/39Ar analyses and detrital zircon U/Pb geochronology

description: U-Pb data from detrital zircons, 40Ar/39Ar data from mafic rocks.
DOI: 10.17632/cd9r82h5b8.1
title: Data for: Evolution of Cambro-Ordovician North Gondwana active margin: geochemistry and zircon geochronology evidence from Góry Sowie metasedimentary rocks

description: U-Pb-Lu-Hf isotopic data on zircons for granulite and paragneiss samples of Góry Sowie Massif
DOI: 10.17632/mdxvjbsy3b.1
title: Data for: Distinct Periods of debris flow activity in tributary valleys of different sizes along the Bailong River

description: Four 14C ages for alluvial fans in the CJB valley along the Bailong River were reported in the paper
DOI: 10.17632/3pg97wthyc.1
title: Data for: New type of sand wedge polygons in the salt cemented soils of the hyper-arid Atacama Desert.

description: Research data for: "New type of sand wedge polygons in the salt cemented soils of the hyper-arid Atacama Desert. "
DOI: 10.25345/c51r3j
title: MassIVE Reanalysis RMSV000000309.3 - Illustrated end-to-end PPI reanalysis
title: Identification results for the end-to-end PPI reanalysis described in the following Jupyter notebook: https://github.com/bittremieux/sars_cov_2
DOI: 10.5281/zenodo.4248198
title: Dataset for Pore-scale investigation of forced imbibition in porous media

description: Dataset for the manuscript titled" Pore-scale investigation of forced imbibition in porous media"
DOI: 10.5281/zenodo.3626244
title: Dataset for Pore-scale investigation of forced imbibition in porous media

description: Dataset for the manuscript titled" Pore-scale investigation of forced imbibition in porous media"
DOI: 10.5281/zenodo.4244215
title: Data and code for the manuscript: "Varying richness need not imply non-random species co-occurrence: implications for specifying null models"

description: Data and R code for the manuscript "Varying richness need not imply non-random species co-occurrence: implications for specifying null models".
DOI: 10.5281/zenodo.4244214
title: Data and code for the manuscript: "Varying richness need not imply non-random species co-occurrence: implications for specifying null models"

description: Data and R code for the manuscript "Varying richness need not imply non-random species co-occurrence: implications for specifying null models".
DOI: 10.21227/zap2-2w13
title: Consumption Behaviour Data Mining with Smart Meter Data

description: This work uses extensive feature engineering to extract useful information about the behaviour of energy consumers. These features are then used to train a random forest model to forecast unknown monthly consumption.
DOI: 10.25345/c5x20k
title: MassIVE MSV000086417 - Evaluation of differential peptide loading on TMT-based proteomic and phosphoproteomic data quality
title: Investigating the impacts on MS data quantitation reproducibility when loading differential amounts of peptides, ranging from 20 to 400 ug, across channels of TMT 11 multiplexes. PTRC_Exp9 files represent global proteome and phosphoproteome data generated from PBMCs isolated from AML patients, acquired through 12 fractions and 6 fractions per plex, respectively. In this experiment, TMT channels were loaded with varying peptide quantities ranging from 20 to 400 ug. PTRC_Exp12 files represent proteomic and phosphoproteomic data from the MOLM-14 AML cell line, also acquired across 12 global proteomics fractions and 6 phosphoproteomics fractions per plex. In this experiment, all TMT channels were loaded with equivalent quantity of peptides (400 ug). Samples were reduced with dithiothreitol, alkylated with iodoacetamide, and double-digested with Lys-C and trypsin. Digested peptides were desalted with C18 SPE columns, labeled with TMT11 isobaric tags, and fractionated by high pH reverse phase separation. After aliquots were removed for global proteomics (12 fractions per plex), samples were concatenated and IMAC was used to enrich phosphopeptides (6 fractions per plex). LC-MS/MS measurements were acquired on an Orbitrap Fusion Lumos mass spectrometer.
DOI: 10.5519/qd.d8te8tz1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (90 records)
DOI: 10.6084/m9.figshare.13191500
title: DNA Sequencing Data 2020 PLOS One 1

description: This data set is composed of sequencing data used in a PLOS ONE manuscript submitted in 2020.
DOI: 10.6084/m9.figshare.13191500.v1
title: DNA Sequencing Data 2020 PLOS One 1

description: This data set is composed of sequencing data used in a PLOS ONE manuscript submitted in 2020.
DOI: 10.6084/m9.figshare.13174181
title: Dataset for Integrated cross-supplier order and logistic scheduling in cloud manufacturing

description: The data set is made up of 6 independent files. The name of each file has the form xx_yy_zz, where xx indicates the total number of orders, yy indicates the number of suppliers, zz indicates the number of vehicles. Tha aim of the data set is to test the performance of the integrated cross-supplier order and logistic scheduling problem in cloud manufacturing environment.
DOI: 10.6084/m9.figshare.12919013.v2
title: Chemistry of Atmospheric Fine Particles during the COVID-19 Pandemic in a Megacity of China

description: COVID-19 data<br>
DOI: 10.5281/zenodo.3916593
title: Datasets for TEEBot

description: Datasets for TEEBot (tissue specific gene expression prediction from whole blood transcriptome) Scripts available on github: https://github.com/mbasugit/Imputation
description: {"references": ["Basu M et al (2020): Predicting tissue-specific gene expression from whole blood transcriptome, biorxiv"]}
DOI: 10.5281/zenodo.3916592
title: Datasets for TEEBot

description: Datasets for TEEBot (tissue specific gene expression prediction from whole blood transcriptome) Scripts available on github: https://github.com/mbasugit/Imputation
description: {"references": ["Basu M et al (2020): Predicting tissue-specific gene expression from whole blood transcriptome, biorxiv"]}
DOI: 10.6084/m9.figshare.13199110
title: Additional file 5 of Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

description: Additional file 5:. Table S15
DOI: 10.6084/m9.figshare.13199101
title: Additional file 2 of Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

description: Additional file 2:. Table S2
DOI: 10.6084/m9.figshare.13199104.v1
title: Additional file 3 of Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

description: Additional file 3:. Table S3
DOI: 10.6084/m9.figshare.13199104
title: Additional file 3 of Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

description: Additional file 3:. Table S3
DOI: 10.6084/m9.figshare.13199110.v1
title: Additional file 5 of Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

description: Additional file 5:. Table S15
DOI: 10.6084/m9.figshare.13199107.v1
title: Additional file 4 of Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

description: Additional file 4:. Table S9
DOI: 10.6084/m9.figshare.13199107
title: Additional file 4 of Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

description: Additional file 4:. Table S9
DOI: 10.6084/m9.figshare.13199101.v1
title: Additional file 2 of Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

description: Additional file 2:. Table S2
DOI: 10.6084/m9.figshare.13199220
title: Additional file 2 of Comprehensive genetic testing combined with citizen science reveals a recently characterized ancient MC1R mutation associated with partial recessive red phenotypes in dog

description: Additional file 2 Table S2. Phenotype analysis of 125 dogs with known genotype for MC1R, CBD103 and ASIP loci.
DOI: 10.6084/m9.figshare.13199220.v1
title: Additional file 2 of Comprehensive genetic testing combined with citizen science reveals a recently characterized ancient MC1R mutation associated with partial recessive red phenotypes in dog

description: Additional file 2 Table S2. Phenotype analysis of 125 dogs with known genotype for MC1R, CBD103 and ASIP loci.
DOI: 10.6084/m9.figshare.13199217
title: Additional file 1 of Comprehensive genetic testing combined with citizen science reveals a recently characterized ancient MC1R mutation associated with partial recessive red phenotypes in dog

description: Additional file 1 Table S1. Allele frequency of R301C variant in the study sample composition.
DOI: 10.6084/m9.figshare.13199265
title: Additional file 1 of Emergency department and hospital admissions among people with dementia living at home or in nursing homes: results of the European RightTimePlaceCare project on their frequency, associated factors and costs

description: Additional file 1: Baseline characteristics of informal caregivers.
DOI: 10.6084/m9.figshare.13199265.v1
title: Additional file 1 of Emergency department and hospital admissions among people with dementia living at home or in nursing homes: results of the European RightTimePlaceCare project on their frequency, associated factors and costs

description: Additional file 1: Baseline characteristics of informal caregivers.
DOI: 10.6084/m9.figshare.13199305
title: Additional file 1 of Human reliability analysis of bronchoscope-assisted percutaneous dilatational tracheostomy: implications for simulation-based education

description: Additional file 1.
DOI: 10.6084/m9.figshare.12815276
title: QM-symex-database

description: QM-symex-database
DOI: 10.6084/m9.figshare.13199305.v1
title: Additional file 1 of Human reliability analysis of bronchoscope-assisted percutaneous dilatational tracheostomy: implications for simulation-based education

description: Additional file 1.
DOI: 10.6084/m9.figshare.12815276.v2
title: QM-symex-database

description: QM-symex-database
DOI: 10.6084/m9.figshare.13199217.v1
title: Additional file 1 of Comprehensive genetic testing combined with citizen science reveals a recently characterized ancient MC1R mutation associated with partial recessive red phenotypes in dog

description: Additional file 1 Table S1. Allele frequency of R301C variant in the study sample composition.
DOI: 10.25817/5fa4d3b805e69
title: A novel approach to non-surgical sterilization