cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.u6n7cc
title: Occurrence Download

description: A dataset containing 250714 records in GBIF matching the query:
SELECT
 "year",
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude,
 COALESCE(coordinateUncertaintyInMeters, 1000)) AS mgrsCode,
 speciesKey,
 species,
 "order",
 family,
 genus,
 COUNT(*) AS n,
 MIN(COALESCE(coordinateUncertaintyInMeters, 0)) AS minCoordinateUncertaintyInMeters,
 IF(ISNULL("order"), NULL, SUM(COUNT(*)) OVER (PARTITION BY "order")) AS orderCount,
 IF(ISNULL(family), NULL, SUM(COUNT(*)) OVER (PARTITION BY family)) AS familyCount,
 IF(ISNULL(genus), NULL, SUM(COUNT(*)) OVER (PARTITION BY genus)) AS genusCount
 FROM
 occurrence
 WHERE
 occurrenceStatus = 'PRESENT'
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND level1gid = 'BEL.2_1'
 AND "year" &gt;= 2007
 AND "year" &lt;= 2022
 AND speciesKey IS NOT NULL
 AND decimalLatitude IS NOT NULL
 AND decimalLongitude IS NOT NULL
 AND class = 'Aves'
 AND collectionCode != 'ABV'
 AND coordinateUncertaintyInMeters &lt;= 1000
 GROUP BY
 "year",
 mgrsCode,
 speciesKey,
 "order",
 family,
 genus,
 species
 ORDER BY
 "year" ASC,
 mgrsCode ASC,
 speciesKey ASC

 The dataset's 250714 records were derived from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004579-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4bw73
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atrina chautardi",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004834-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aggy28
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buddleja davidii",
 "HasCoordinate is true",
 "Country is Portugal"
 ]
}

 The dataset includes 97 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004837-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lskcuu
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-130.21068 -32.28427,11.21068 -32.28427,11.21068 24.28427,-130.21068 24.28427,-130.21068 -32.28427))",
 "HasCoordinate is true",
 "TaxonKey is Parkia pendula (Willd.) Benth. ex Walp.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 72 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045945-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7294/24280165
title: Data and supplementary materials for "What Controls Early Restraining Bend Growth? Structural, Morphometric, and Numerical Modeling Analyses From the Eastern California Shear Zone"

description: These are supplementary data and results to support the manuscript "What Controls Early Restraining Bend Growth? Structural, Morphometric, and Numerical Modeling Analyses From the Eastern California Shear Zone" submitted to the AGU journal Tectonics. Additional data and model results are available upon request.
DOI: 10.15468/dl.n359ef
title: Occurrence Download

description: A dataset containing 718129 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stachys L."
 ]
}

 The dataset includes 718129 records from 1310 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157594-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7294/24280165.v2
title: Data and supplementary materials for "What Controls Early Restraining Bend Growth? Structural, Morphometric, and Numerical Modeling Analyses From the Eastern California Shear Zone"

description: These are supplementary data and results to support the manuscript "What Controls Early Restraining Bend Growth? Structural, Morphometric, and Numerical Modeling Analyses From the Eastern California Shear Zone" submitted to the AGU journal Tectonics. Additional data and model results are available upon request.
DOI: 10.15468/dl.4up3qd
title: Occurrence Download

description: A dataset containing 825037 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "Year 1990-2018",
 {
 "or" : [
 "Geometry POLYGON((-60 -25,-41 -25,-41 -1.5,-60 -1.5,-60 -25))",
 "Geometry POLYGON((-25 -60,-1.5 -60,-1.5 -41,-25 -41,-25 -60))"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 825037 records from 195 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045947-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7294/24280165.v1
title: Data and supplementary materials for "What shapes a restraining bend? Structural, morphometric, and numerical analyses from the Eastern California shear zone"

description: These are supplementary data and results to support the manuscript "What shapes a restraining bend? Structural, morphometric, and numerical modeling analyses from the Eastern California shear zone" submitted to the AGU journal Tectonics. Additional data and model results are available upon request.
DOI: 10.15468/dl.j2j48h
title: Occurrence Download

description: A dataset containing 211 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Impacts of climate change on Vitellaria paradoxa in Benin"
 ]
}

 The dataset includes 211 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080548-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4yqst
title: Occurrence Download

description: A dataset containing 1464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Persea americana Mill.",
 "Year 2009-2019"
 ]
}

 The dataset includes 1464 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095385-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642350_d3
title: Additional file 11: Table S6. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Specifically expressed genes in DX and GN at 24Â h under cold stress compared control (0Â h). (XLSX 61 kb)
DOI: 10.6084/m9.figshare.c.3642350_d2
title: Additional file 4: Table S2. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: List of Elymus nutans transcriptome annotations. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3642350_d4
title: Additional file 27: Table S20. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: List of hub genes in in response to cold treatment of DX and GN genotypes. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3642350_d5
title: Additional file 13: Table S8. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Common expression DEGs in response to cold stress in DX and GN genotypes. Persistently up-regulated genes is highlighted in red and bold. (XLSX 85 kb)
DOI: 10.6084/m9.figshare.c.3642350_d6
title: Additional file 24: Table S18. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to ABA metabolism and signaling in response to cold treatment of DX and GN genotypes. (XLSX 350 kb)
DOI: 10.6084/m9.figshare.c.3642350_d7
title: Additional file 28: Table S21. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: List of primer sequences of randomly selected unigenes used for qRT-PCR analysis. (XLSX 480 kb)
DOI: 10.6084/m9.figshare.c.3642350_d8
title: Additional file 10: Table S5. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Specifically expressed genes in DX and GN at 3Â h of cold stress compared with control (0Â h). (XLSX 388 kb)
DOI: 10.6084/m9.figshare.c.3642350_d10
title: Additional file 8: Table S3. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Summary of annotation and expression of 5436 and 4323 differentially expressed genes (DEGs) in DX and GN under cold stress. (XLSX 1993 kb)
DOI: 10.6084/m9.figshare.c.3642350_d11
title: Additional file 23: Table S17. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to photosynthesis in response to cold treatment of DX and GN genotypes. (XLSX 352 kb)
DOI: 10.6084/m9.figshare.c.3642350_d13
title: Additional file 25: Table S19. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to cold-responsive protein in response to cold treatment of DX and GN genotypes. (XLSX 483 kb)
DOI: 10.6084/m9.figshare.c.3642350_d16
title: Additional file 21: Table S15. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to carbohydrate metabolism in response to cold treatment of DX and GN genotypes. (XLSX 412 kb)
DOI: 10.6084/m9.figshare.c.3642350_d15
title: Additional file 22: Table S16. of 
                     De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress

description: Differently-expressed genes related to secondary metabolism in response to cold treatment of DX and GN genotypes. (XLSX 415 kb)
DOI: 10.15468/dl.bvbnnr
title: Occurrence Download

description: A dataset containing 823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles culicifacies Giles, 1901"
 ]
}

 The dataset includes 823 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033984-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642353_d13
title: Additional file 6: Table S3. of Identification of global regulators of T-helper cell lineage specification

description: Table showing Pearson correlation coefficients between platforms. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3642365_d1
title: MOESM3 of A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds

description: Additional file 3: Tables S3, S4, S5, S6 and S7. Additional information on the results of the gene enrichment analysis performed with Ingenuity Pathway Analysis.  This file contains five tables providing additional details on the results of the gene enrichment analysis: a summary of the significant diseases and disorders annotations (Table S3), a summary of significant physiological system development and function annotations (Table S4), a summary of significant molecular and cellular functions annotations (Table S5), the key-word attribution to each significant functional annotation conserved for the analysis (Table S6) and the significant canonical pathways (Table S7).
DOI: 10.6084/m9.figshare.c.3642365_d2
title: MOESM2 of A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds

description: Additional file 2: Table S2. Details on non-rare putative deleterious variants selected in 15 breeds from the 1000 bull genomes run4 dataset. This file contains the list of the 2489 variants selected in this study. For each of them, we indicate: (i) the frequency in each breed, (ii) the functional consequence on the protein, and (iii) the genetic syndromes associated with mutations within the same gene in human (Online Mendelian Inheritance in Man, OMIM; http://www.omim.org ) and mouse (Mammalian Phenotypes; http://www.informatics.jax.org ). AAN: Aberdeen-Angus, BBR: Beef Booster Composite, BSW: Brown Swiss, CHA: Charolais, GVH: Gelbvieh, HER: Hereford, HOL: Holstein, JER: Jersey, LIM: Limousine, MON: Montbéliarde, NOR: Normande, RAN: Red Angus, RDCF: Finnish Red, RDCS: Swedish Red, and SIM: Simmental.
DOI: 10.6084/m9.figshare.c.3642365_d3
title: MOESM1 of A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds

description: Additional file 1: Table S1. Details on animals used in the phenotypic characterization of the RP1 frameshift. This table provides details on the animals used for each analysis in this study. AAN: Aberdeen-Angus, BBB: Belgian Blue, BBR: Beef Booster Composite, CHA: Charolais, GVH: Gelbvieh, HOL: Holstein, NOR: Normande, NOR*HOL: Normande*Holstein crossbred RAN: Red Angus, RDP: Maine-Anjou.
DOI: 10.6084/m9.figshare.c.3642380_d1
title: Additional file 1: of Front-line intraperitoneal versus intravenous chemotherapy in stage III-IV epithelial ovarian, tubal, and peritoneal cancer with minimal residual disease: a competing risk analysis

description: Dataset for computing competing risks. (CSV 18Â kb)
DOI: 10.6084/m9.figshare.c.3642413_d1
title: Additional file 4: of Metassembler: merging and optimizing de novo genome assemblies

description: A1Zscores.txt: Zscores for all metrics and Overall Zscore for all metassemblies and input assemblies. (TXT 11 kb)
DOI: 10.6084/m9.figshare.c.3642413_d2
title: Additional file 5: of Metassembler: merging and optimizing de novo genome assemblies

description: A2MetEventsTable.txt: Reported metassembly events for all Assemblathon2 metassemblies of the three species at each merging step. (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3642413_d5
title: Additional file 3: of Metassembler: merging and optimizing de novo genome assemblies

description: A1metricTable.txt: GAGE reported assembly evaluation metrics for all Assemblathon1 metassemblies at each step. (TXT 206 kb)
DOI: 10.6084/m9.figshare.c.3642413_d4
title: Additional file 2: of Metassembler: merging and optimizing de novo genome assemblies

description: A1MetEventsTable.txt: Reported metassembly events (i.e. modifications to the primary assembly such as gaps closed, number of scaffold links, etc) for all Assemblathon1 metassemblies at each merging step. (TXT 24 kb)
DOI: 10.6084/m9.figshare.c.3642413_d6
title: Additional file 6: of Metassembler: merging and optimizing de novo genome assemblies

description: A2metricTable.txt: REAPR, CEGMA and contiguity statistics reported for all Assemblathon2 metassemblies of the three species at each step. (TXT 9 kb)
DOI: 10.6084/m9.figshare.c.3642413_d7
title: Additional file 7: of Metassembler: merging and optimizing de novo genome assemblies

description: A2Zscores.txt: Zscores for all metrics and Overall Zscore for all metassemblies and input assemblies of the three species. (TXT 1 kb)
DOI: 10.15468/dl.qmcrcy
title: Occurrence Download

description: A dataset containing 1367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles darlingi Root, 1926"
 ]
}

 The dataset includes 1367 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033985-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642476_d1
title: Additional file 2: Table S1. of A combination of TERT promoter mutation and MGMT methylation status predicts clinically relevant subgroups of newly diagnosed glioblastomas

description: Molecular and clinical characteristics of Cohort 1 (n = 758). Table S2. Molecular and clinical characteristics of GBM cohort (n = 453). Table S3. Univariate and multivariate Cox regression analyses for Group A (IDH mutated-TERT mutated) tumors in Cohort 1 (n = 155). Table S4. Univariate and multivariate Cox regression analyses for Group B (IDH mutated-TERT wild-type) tumors in Cohort 1 (n = 131). Table S5. Univariate and multivariate Cox regression analyses for Group C (IDH wild-type-TERT wild-type) tumors in Cohort 1 (n = 237). Table S6. Univariate and multivariate Cox regression analyses for Group D (IDH wild-type-TERT mutated) tumors in Cohort 1 (n = 235). Table S7. Univariate and multivariate Cox regression analyses for GBM in Cohort 1 (n = 260). Table S8. Univariate and multivariate Cox regression analyses for GBM in Cohort 2 (n = 193). Table S9. Background of combined GBM cohort stratified by TERT and MGMT status (n = 453). Table S10. Survival time and WHO grade in each molecular subgroup of Cohort 1 (n = 758). (XLSX 254 kb)
DOI: 10.6084/m9.figshare.c.3642479_d1
title: Additional file 3: Table S2. of Transcriptome analysis of the painted lady butterfly, Vanessa cardui during wing color pattern development

description: Differentially expressed (DE) transcripts (≥500 bp) for each comparison between wing development stages (LL vs. EP, EP vs. PO, PO vs. LM). Information provided on fold change, FDR p-value, RPKM and gene name for each contig. Up-regulated genes are highlighted in pink and down-regulated genes are highlighted in green. This table also includes the complete list of all 9, 376 differentially expressed transcripts. (XLSX 645 kb)
DOI: 10.6084/m9.figshare.c.3642479_d2
title: Additional file 6: Table S5. of Transcriptome analysis of the painted lady butterfly, Vanessa cardui during wing color pattern development

description: Differentially expressed genes (FDR p
DOI: 10.6084/m9.figshare.c.3642479_d3
title: Additional file 5: Table S4. of Transcriptome analysis of the painted lady butterfly, Vanessa cardui during wing color pattern development

description: Differentially expressed genes (FDR p
DOI: 10.6084/m9.figshare.c.3642479_d6
title: Additional file 7: Table S6. of Transcriptome analysis of the painted lady butterfly, Vanessa cardui during wing color pattern development

description: Comparison of butterfly transcriptomes reveals 28 contigs common to Vanessa cardui, Junonia coenia, Danaus plexippus and Heliconius melpomene which received no significant hits to NCBI (1E-3). Contigs highlighted in grey are differentially expressed in V. cardui across the developmental stages, shown in red (up-regulated) or green (down-regulated). Blast results for all comparisons to V. cardui including Bicyclus anynana brain transcriptome and Bombyx mori are also presented. (XLSX 4847Â kb)
DOI: 10.6084/m9.figshare.c.3642479_d7
title: Additional file 4: Table S3. of Transcriptome analysis of the painted lady butterfly, Vanessa cardui during wing color pattern development

description: BLAST2GO PRO gene ontology classification for differentially expressed genes (FDR p
DOI: 10.6084/m9.figshare.c.3642488_d1
title: Additional file 1: of Spotting the enemy within: Targeted silencing of foreign DNA in mammalian genomes by the KrĂźppel-associated box zinc finger protein family

description: KRAB domain sequences of human and mouse KRAB-ZFPs in Multi-FASTA format. See Fig. 3 for details. (FA 34 kb)
DOI: 10.6084/m9.figshare.c.3642485_d3
title: Additional file 2: of Student self-reported communication skills, knowledge and confidence across standardised patient, virtual and traditional clinical learning environments

description: Quantitative data. Includes all data used for statistical analysis. Demographic and prior experience variables have been removed from the data file to ensure the confidentiality of participants and clinical educators. (XLS 79Â kb)
DOI: 10.6084/m9.figshare.c.3642497_d1
title: MOESM3 of Pharmacogenetics driving personalized medicine: analysis of genetic polymorphisms related to breast cancer medications in Italian isolated populations

description: Additional file 3: Table S3. Consequence annotation for analyzed variants from ANNOVAR.
DOI: 10.15468/dl.ewtnny
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anopheles fluviatilis James, 1902"
 ]
}

 The dataset includes 30 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033986-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642542_d1
title: Additional file 2: of Prediction of scaffold proteins based on protein interaction and domain architectures

description: It contains results of functional enrichment using DAVID. (P-value
DOI: 10.6084/m9.figshare.c.3642542_d2
title: Additional file 1: of Prediction of scaffold proteins based on protein interaction and domain architectures

description: It contains gold standard positive set, gold negative set and predicted scaffold proteins with type. (XLSX 106Â kb)
DOI: 10.6084/m9.figshare.c.3642578_d2
title: Additional file 4: Table S3. of Genome-wide characterization and expression analysis of MYB transcription factors in Gossypium hirsutum

description: Location of MYB genes in the upland cotton genome. The positive (+) and negative (â  ) symbols following each gene represent forward and reverse orientations on the chromosome, respectively. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3642578_d4
title: Additional file 9: Table S5. of Genome-wide characterization and expression analysis of MYB transcription factors in Gossypium hirsutum

description: The statistical analysis of each group of the NJ phylogenetic tree. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3642578_d5
title: Additional file 5: Table S4. of Genome-wide characterization and expression analysis of MYB transcription factors in Gossypium hirsutum

description: Synonymous and non-synonymous substitution rates and the estimated times for the tandem and segmental duplication events in GhMYB genes. (XLSX 18 kb)