cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/de53wk
title: Two new species of freshwater crab of the genus Aparapotamon Dai & Chen, 1985 (Crustacea, Brachyura, Potamidae) from Yunnan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tan, Qi-Hong, Zhou, Xiao-Juan, Zou, Jie-Xin (2021): Two new species of freshwater crab of the genus Aparapotamon Dai & Chen, 1985 (Crustacea, Brachyura, Potamidae) from Yunnan, China. ZooKeys 1056: 149-171, DOI: http://dx.doi.org/10.3897/zookeys.1056.63755, URL: http://dx.doi.org/10.3897/zookeys.1056.63755
DOI: 10.17632/g8j2n2rjvc.1
title: Data for: Numerical study of flow and heat transfer characteristics of microalgae slurry in a solar-driven hydrothermal pretreatment system

description: Critical data about the flow and heat transfer characteristics of microalgae slurry.
DOI: 10.17632/5fgxzy27v2.1
title: Evading immune surveillance via tyrosine phosphorylation of nuclear PCNA

description: Western blot image and quantification data for each figures
DOI: 10.15468/vr6m65
title: Onycocaris longirostris Bruce, 1980 (Crustacea: Decapoda: Pontoniinae), new to the Australian fauna

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bruce, A. J. (2012): Onycocaris longirostris Bruce, 1980 (Crustacea: Decapoda: Pontoniinae), new to the Australian fauna. Zootaxa 3299 (1): 61-65, DOI: 10.11646/zootaxa.3299.1.3, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.3299.1.3
DOI: 10.5281/zenodo.5250406
title: denv_genomes_severity dataset

description: Database containing .csv files with samples of dengue protein sequences labeled with the severity degree of infection in human hosts.
DOI: 10.5519/qd.vddk0zx3
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (626 records)
DOI: 10.5519/qd.7y5rvadv
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (31 records)
DOI: 10.15468/y7uan7
title: New records for the South African diaptomid fauna with a complementary description of Paradiaptomus lamellatus Sars (Copepoda, Diaptomidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Suárez-Morales, E., Rayner, Nancy A. (2010): New records for the South African diaptomid fauna with a complementary description of Paradiaptomus lamellatus Sars (Copepoda, Diaptomidae). Journal of Natural History 38 (22): 2803-2819, DOI: 10.1080/00222930310001657676, URL: http://dx.doi.org/10.1080/00222930310001657676
DOI: 10.6073/pasta/0adf2a0318199a977be2b0e5e9efe0ee
title: Core Research Site Web Quadrat Data for the Net Primary Production Study at the Sevilleta National Wildlife Refuge, New Mexico

description: This dataset is part of a long-term study at the Sevilleta LTER measuring net primary production (NPP) across four distinct ecosystems: creosote-dominant shrubland (Site C, est. winter 1999), black grama-dominant grassland (Site G, est. winter 1999), blue grama-dominant grassland (Site B, est. winter 2002), and pinon-juniper woodland (Site P, est. winter 2003). Net primary production is a fundamental ecological variable that quantifies rates of carbon consumption and fixation. Estimates of NPP are important in understanding energy flow at a community level as well as spatial and temporal responses to a range of ecological processes. Above-ground net primary production is the change in plant biomass, represented by stems, flowers, fruit and and foliage, over time and incoporates growth as well as loss to death and decomposition. To measure this change the vegetation variables in this dataset, including species composition and the cover and height of individuals, are sampled twice yearly (spring and fall) at permanent 1m x 1m plots within each site. A third sampling at Site C is performed in the winter. The data from these plots is used to build regressions correlating biomass and volume via weights of select harvested species obtained in SEV157, "Net Primary Productivity (NPP) Weight Data." This biomass data is included in SEV182, "Seasonal Biomass and Seasonal and Annual NPP for Core Research Sites." This dataset is designated as NA-US-011 in the Global Index of Vegetation-Plot Databases (GIVD). To aid tracking of the use of databases in this index, please also reference this number when citing this data. The GIVD report for SEV129 can be found in: Biodiversity and Ecology 4 - Vegetation Databases for the 21st Century (2012) by J. Dengler et al.
DOI: 10.15468/h7jj5n
title: A new species of Caloctenus (Araneae: Ctenidae) from Colombia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hazzi, Nicolas A., Davila, Diana Silva (2012): A new species of Caloctenus (Araneae: Ctenidae) from Colombia. Zootaxa 3315 (1): 65-68, DOI: 10.11646/zootaxa.3315.1.3, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.3315.1.3
DOI: 10.25934/00007352
title: Dummy request for 4329 - Request to re-access research environment

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5281/zenodo.5250565
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.6084/m9.figshare.15043110
title: Pacific warming pattern diversity modulated by Indo-Pacific sea surface temperature gradient

description: simulation.sst.trend.ctrl.fiow.siow.nc is the sst trend for CTRL, FIOW and SIOW numerical model results to calculate Figure s8 in "Pacific warming pattern diversity modulated by Indo-Pacific sea surface temperature gadient". simulation.uv.trend.ctrl.fiow.siow.nc is same as simulation.sst.trend.ctrl.fiow.siow.nc, but for the horizontal wind trend used in Figure s8.
DOI: 10.6084/m9.figshare.15043110.v1
title: Pacific warming pattern diversity modulated by Indo-Pacific sea surface temperature gradient

description: simulation.sst.trend.ctrl.fiow.siow.nc is the sst trend for CTRL, FIOW and SIOW numerical model results to calculate Figure s8 in "Pacific warming pattern diversity modulated by Indo-Pacific sea surface temperature gadient". simulation.uv.trend.ctrl.fiow.siow.nc is same as simulation.sst.trend.ctrl.fiow.siow.nc, but for the horizontal wind trend used in Figure s8.
DOI: 10.6073/pasta/c6a6ff9d718fbd8fefcff0b747f631a9
title: Nitrogen Fertilization Experiment (NFert): Net Primary Production Quadrat Data at the Sevilleta National Wildlife Refuge, New Mexico

description: This dataset is part of a long-term study at the Sevilleta LTER, begun in spring 2004, which examines how fertilization affects above-ground biomass production (ANPP) in a mixed desert-grassland. Net primary production is a fundamental ecological variable that quantifies rates of carbon consumption and fixation. Estimates of NPP are important in understanding energy flow at a community level as well as spatial and temporal responses to a range of ecological processes. Above-ground net primary production is the change in plant biomass, represented by stems, flowers, fruit and foliage, over time and incorporates growth as well as loss to death and decomposition. To measure this change the vegetation variables in this dataset, including species composition and the cover and height of individuals, are sampled twice yearly (spring and fall) at permanent 1m x 1m plots. The data from these plots is used to build regressions correlating biomass and volume via weights of select harvested species obtained in SEV157, "Net Primary Productivity (NPP) Weight Data." This biomass data is included in SEV186, "Nitrogen Fertilization Experiment (NFert): Seasonal Biomass and Seasonal and Annual NPP Data."
DOI: 10.6084/m9.figshare.16435608.v1
title: Date for Sleeping sites use of Assamese macaques

description: <b>ABSTRACT </b><b></b> <b>Objectives</b><b>:</b> We investigated the sleeping site used by Assamese macaques living in Southwest Guangxi, China to examine their behavioral adaptation to limestone forests by evaluating hypotheses for predator avoidance, food proximity, and range or resource defense. <b>Materials and Methods:</b> We recorded the locations of sleeping sites on a topographic map using a grid cell method methodology, and home range and forging patches via instantaneous scan sampling. <b>Results:</b> Assamese macaques used 19 sleeping sites, mainly located on cliffs. They rapidly entered sleeping sites and then remained silent. They preferred reuse three sites but never used them for more than four consecutive nights. Sleeping site use was positively correlated with the number of surrounding foraging patches, but the distances between sleeping sites and the last/first feeding areas (84.16 ± 41.26 and 94.88 ± 45.83 m, respectively) were not affected by seasonal fluctuations in fruit availability; these distances were greater than those predicted under a multiple central place foraging strategy (MCPF) but smaller than those predicted under a central place foraging strategy. Assamese macaques sleep in peripheral parts of their home range as expected, and there were no conflicts with neighboring groups. <b>Discussion:</b> Macaques’ sleeping site use was strongly affected by predator avoidance and proximity to food resources, but not by resource defense. The vertical distribution of sleeping sites on hills was not influenced by fruit availability. The macaques used a MCPF to maximize food harvest efficiency. Assamese macaques’ sleeping site use in limestone forests supports the hypotheses of predator avoidance and food proximity.
DOI: 10.6084/m9.figshare.16435608
title: Date for Sleeping sites use of Assamese macaques

description: <b>ABSTRACT </b><b></b> <b>Objectives</b><b>:</b> We investigated the sleeping site used by Assamese macaques living in Southwest Guangxi, China to examine their behavioral adaptation to limestone forests by evaluating hypotheses for predator avoidance, food proximity, and range or resource defense. <b>Materials and Methods:</b> We recorded the locations of sleeping sites on a topographic map using a grid cell method methodology, and home range and forging patches via instantaneous scan sampling. <b>Results:</b> Assamese macaques used 19 sleeping sites, mainly located on cliffs. They rapidly entered sleeping sites and then remained silent. They preferred reuse three sites but never used them for more than four consecutive nights. Sleeping site use was positively correlated with the number of surrounding foraging patches, but the distances between sleeping sites and the last/first feeding areas (84.16 ± 41.26 and 94.88 ± 45.83 m, respectively) were not affected by seasonal fluctuations in fruit availability; these distances were greater than those predicted under a multiple central place foraging strategy (MCPF) but smaller than those predicted under a central place foraging strategy. Assamese macaques sleep in peripheral parts of their home range as expected, and there were no conflicts with neighboring groups. <b>Discussion:</b> Macaques’ sleeping site use was strongly affected by predator avoidance and proximity to food resources, but not by resource defense. The vertical distribution of sleeping sites on hills was not influenced by fruit availability. The macaques used a MCPF to maximize food harvest efficiency. Assamese macaques’ sleeping site use in limestone forests supports the hypotheses of predator avoidance and food proximity.
DOI: 10.25345/c5gr9v
title: MassIVE MSV000088018 - Proteomic characterization of Acellular Adipose Tissue (AAT) and Acellular Dermis (ACD) biomaterials
title: Peptide composition and tissue-specific properties two biomaterials were assessed by LC-MS/MS: Acellular Adipose Tissue (AAT) and a commercially available dermal ECM material Acellular Dermis (ACD, Cymetra)
DOI: 10.25493/fdhf-awy
title: Density measurements of different receptors for Area Oc2M [rat, v1.0]

description: This dataset contains the densities (in fmol/mg protein) of receptors for classical neurotransmitters of Area Oc2M obtained by means of quantitative _in vitro_ autoradiography. The receptor densities are visualized as _fingerprints_ (**fp**), which provide the mean density and standard deviation for each of the analyzed receptor types, averaged across samples. Overview of available measurements [ **receptor** \| **_neurotransmitter_** \| _labeling agent_ ]: **AMPA** \| **_glutamate_** \| _[<sup>3</sup>H]AMPA_ **kainate** \| **_glutamate_** \| _[<sup>3</sup>H]kainate_ **NMDA** \| **_glutamate_** \| _[<sup>3</sup>H]MK-801_ **GABA<sub>A</sub>** \| **_GABA_** \| _[<sup>3</sup>H]muscimol_ **GABA<sub>B</sub>** \| **_GABA_** \| _[<sup>3</sup>H]CGP54626_ **GABA<sub>A</sub>/BZ** \| **_GABA_** \| _[<sup>3</sup>H]flumazenil_ **muscarinic M<sub>1</sub>** \| **_acetylcholine_** \| _[<sup>3</sup>H]pirenzepine_ **muscarinic M<sub>2</sub>** \| **_acetylcholine_** \| _[<sup>3</sup>H]oxotremorine-M_ **muscarinic M<sub>3</sub>** \| **_acetylcholine_** \| _[<sup>3</sup>H]4-DAMP_ **nicotinic α<sub>4</sub>β<sub>2</sub>** \| **_acetylcholine_** \| _[<sup>3</sup>H]epibatidine_ **α<sub>1</sub>** \| **_noradrenalin/norepinephrine_** \| _[<sup>3</sup>H]prazosin_ **α<sub>2</sub>** \| **_noradrenalin/norepinephrine_** \| _[<sup>3</sup>H]UK-14,304_ **5-HT<sub>1A</sub>** \| **_serotonin_** \| _[<sup>3</sup>H]8-OH-DPAT_ **5-HT<sub>2</sub>** \| **_serotonin_** \| _[<sup>3</sup>H]ketanserin_ **D<sub>1</sub>** \| **_dopamine_** \| _[<sup>3</sup>H]SCH23390_ Information on the used tissue samples and corresponding subjects, as well as analyzed receptors accompanies the provided dataset. **For methodological details, see:** Zilles, K. et al. (2002). Quantitative analysis of cyto- and receptorarchitecture of the human brain, pp. 573-602. In: Brain Mapping: The Methods, 2nd edition (A.W. Toga and J.C. Mazziotta, eds.). San Diego, Academic Press. Palomero-Gallagher N, Zilles K. (2018) Cyto- and receptorarchitectonic mapping of the human brain. In: Handbook of Clinical Neurology 150: 355-387
DOI: 10.5439/1607786
title: CACTI ARM Mobile Facility (AMF) Measurements of Ice Nucleating Particles

description: The dataset comprises measures, using Colorado State University's Ice Spectrometer (IS, an immersion freezing device with a range from 0°C down to -26 to -29°C) of atmosperic ice nucleating particle (INP) concentrations taken on ARM's Mobile Facility (AMF-1) Aerosol Observing System, near Villa Yacanto in central Argentina, during the Cloud, Aerosol, and Complex Terrain Interactions (CACTI) Experiment. A filter sampler was mounted on the AOS trailer (2 m below the AOS inlet). Single-use filter units open to the atmosphere fitted with pre-cleaned and pre-sterilized, 47-mm dia. Nuclepore polycarbonate filters were used. Filters were typically drawn for an 8-hour period, totaling 6000 liters sampled on average. After collection, filters were stored at -20°C until processed. Initial processing to obtain spectra of INP number concentration active via the immersion freezing mechanism versus temperature was conducted using CSU's IS instrument (McCluskey et al., 2018). For measurment of INPs, collected aerosol particles were re-suspended in 7-8 mL of 0.1 µm-filtered deionized (DI) water. Aliquots of each suspension, and serial dilutions, were dispensed into trays which were fit into aluminum blocks in the IS. Samples are cooled at 0.33°C min-1 and the freezing temperatures of wells recorded automatically. Cumulative INP concentrations were determined by first calculating the INPs per mL of suspension based on Vali (1971) and then converting to concentration per standard liter of air using the proportion of the total liquid sample dispensed and the air sample volumes. An aliquot of suspension fro selected samples were also heat treated (95°C for 20 min) to denature and deactivate biological INPs, and another aliquot digested in 10% H2O2 at 95°C under UV-B to remove all organic carbon INPs. McCluskey, C. S., J. Ovadnevaite, M. Rinaldi, J. Atkinson, F. Belosi, D. Ceburnis, S. Marullo, T. C. J. Hill, U. Lohmann, Z. A. Kanji, C. O’Dowd, S. M. Kreidenweis, P. J. DeMott, 2018: Marine and Terrestrial Organic Ice Nucleating Particles in Pristine Marine to Continentally-Influenced Northeast Atlantic Air Masses, Journal of Geophysical Research: Atmospheres, 123, 6196–6212, https://doi.org/10.1029/2017JD028033. Vali, G., 1971: Quantitative evaluation of experimental results on the heterogeneous freezing nucleation of supercooled liquids. J. Atmos. Sci., 28, 402–409.
DOI: 10.5439/1607793
title: CACTI ARM Aerial Facility Measurements of Ice Nucleating Particles

description: The dataset comprises measures, using Colorado State University's Ice Spectrometer (IS, an immersion freezing device with a range from 0°C down to -26 to -29°C) of atmospheric ice nucleating particle (INP) concentrations taken on the Atmospheric Radiation Measurement (ARM) program Aerial Facilty (AAF) G-1 aircraft. INP measurements on the G-1 were collected from varied altitudes on different flights over the region of the Sierras de Córdoba mountain range of north-central Argentina, centred over ARM's Mobile Facility (AMF-1) near Villa Yacanto, where ground-based INP measures were being taken concurrently. Both studies took place as part of the Cloud, Aerosol, and Complex Terrain Interactions (CACTI) Experiment. A filter sampling system was deployed on the G-1 to collect aerosol particles for post-processing of INPs collected on filters (measuring their immersion freezing ability) once returned to Colorado State University (CSU). Filter holders used were pre-cleaned aluminum in-line units loaded with pre-cleaned and pre-sterilized 47 mm dia. Nuclepore polycarbonate filters (0.2 mm pore size). Filters were drawn for varied times, resulting in varied volumes collected (51 to 1667 SL). Mass flow rate was recorded in real-time so that total sampled volume (at standard temperature and pressure) could be determined. A total of 34 sample filters were collected over the IOP, including 5 blanks. Filters were stored at -20°C freezer prior to frozen return to Colorado State University (CSU). . Processing to obtain spectra of INP number concentration active via the immersion freezing mechanism versus temperature was conducted using CSU's IS instrument (McCluskey et al., 2018). For measurment of INPs, collected aerosol particles were re-suspended in 7 mL of 0.02 µm-filtered deionized water. Aliquots of each suspension, and serial dilutions, were dispensed into trays which were fit into aluminum blocks in the IS. Samples are cooled at 0.33°C min-1 and the freezing temperatures of wells recorded automatically. Cumulative INP concentrations were determined by first calculating the INPs per mL of suspension based on Vali (1971) and then converting to concentration per standard liter of air using the proportion of the total liquid sample dispensed and the air sample volumes. Aliquots of suspensions from selected samples were also heat treated (95°C for 20 min) to denature and deactivate biological INPs, and digested in 10% H2O2 at 95°C under UV-B to remove all organic carbon INPs. McCluskey, C. S., J. Ovadnevaite, M. Rinaldi, J. Atkinson, F. Belosi, D. Ceburnis, S. Marullo, T. C. J. Hill, U. Lohmann, Z. A. Kanji, C. O’Dowd, S. M. Kreidenweis, P. J. DeMott, 2018: Marine and Terrestrial Organic Ice Nucleating Particles in Pristine Marine to Continentally-Influenced Northeast Atlantic Air Masses, Journal of Geophysical Research: Atmospheres, 123, 6196–6212, https://doi.org/10.1029/2017JD028033. Vali, G., 1971: Quantitative evaluation of experimental results on the heterogeneous freezing nucleation of supercooled liquids. J. Atmos. Sci., 28, 402–409.
DOI: 10.5281/zenodo.5251825
title: Uncovering global-scale risks from commercial chemicals in air

description: Data presented in the manuscript "Uncovering global-scale risks from commercial chemicals in air" by Liu et al. (2021).
DOI: 10.5281/zenodo.5251824
title: Uncovering global-scale risks from commercial chemicals in air

description: Data presented in the manuscript "Uncovering global-scale risks from commercial chemicals in air" by Liu et al. (2021).
DOI: 10.5281/zenodo.5236816
title: Mass Spectrometry Datasets for "Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape"

description: This repository contains mass spectrometry raw datasets for the research paper "<strong><em>Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape</em></strong>". An early version of the manuscript can be viewed on bioRxiv. The datasets include two parts: Identification of nanobodies targeting SARS-CoV-2 spikes. Chemical cross-linking of nanobody-spikes complexes. The included <strong>.raw</strong> files are Thermo Orbitrap Raw files, and can be assessed by various software such as <em>Thermo Xcalibur</em>, <em>ProteoWizard</em> and <em>pymsfilereader</em>.
DOI: 10.5281/zenodo.5236815
title: Mass Spectrometry Datasets for "Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape"

description: This repository contains mass spectrometry raw datasets for the research paper "<strong><em>Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape</em></strong>". An early version of the manuscript can be viewed on bioRxiv. The datasets include two parts: Identification of nanobodies targeting SARS-CoV-2 spikes. Chemical cross-linking of nanobody-spikes complexes. The included <strong>.raw</strong> files are Thermo Orbitrap Raw files, and can be assessed by various software such as <em>Thermo Xcalibur</em>, <em>ProteoWizard</em> and <em>pymsfilereader</em>.
DOI: 10.15468/3hjhae
title: A new Korean earthworm (Oligochaeta: Megadrilacea: Megascolecidae) *

description: This dataset contains the digitized treatments in Plazi based on the original journal article Blakemore, Robert J., Park, Tae Seo, Seo, Hong-Yul (2012): A new Korean earthworm (Oligochaeta: Megadrilacea: Megascolecidae) *. Zootaxa 3368 (1): 256-262, DOI: 10.11646/zootaxa.3368.1.13, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.3368.1.13
DOI: 10.15468/2cvn2d
title: A new species and a new genus of Parabathynellidae (Crustacea, Syncarida) from South Korea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Park, Jong-Geun, Eun, Ye (2012): A new species and a new genus of Parabathynellidae (Crustacea, Syncarida) from South Korea. Zootaxa 3368 (1): 291-299, DOI: 10.11646/zootaxa.3368.1.15, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.3368.1.15
DOI: 10.25442/hku.15170889
title: Supporting data for “Effect of Canton Herbal Tea on the toxicity of Amyloid-beta peptide in cell culture and a transgenic mouse model of Alzheimer’s Disease"

description: The supporting dataset in the result part of the thesis entitle " Effects of Canton Herbal tea on the toxicity of Amyloid-beta peptide in cell culture and a transgenic mouse model of Alzheimer's disease".<br><br>The datasets are comprised of 3 folders, which is classified as supporting data in chapter 3, chapter 4, and chapter 5. It comprised of raw data (experimental file, excel file, images), analysis data, and prism file for statistical analysis and graphs.