cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5802666
title: Supplemental Table S4 from A new stem group echinoid from the Triassic of China leads to a revised macroevolutionary history of echinoids during the end-Permian mass extinction

description: This table provides references and justification for species occurrences used to generate Supplemental Table S3 and the genus level diversity curve in Figure 3.
DOI: 10.6084/m9.figshare.5802666.v1
title: Supplemental Table S4 from A new stem group echinoid from the Triassic of China leads to a revised macroevolutionary history of echinoids during the end-Permian mass extinction

description: This table provides references and justification for species occurrences used to generate Supplemental Table S3 and the genus level diversity curve in Figure 3.
DOI: 10.6084/m9.figshare.5802669
title: Supplemental Table S3 from A new stem group echinoid from the Triassic of China leads to a revised macroevolutionary history of echinoids during the end-Permian mass extinction

description: This table contains taxon counts and presence/ absence data for genera of echinoids used to produce Figure 3.
DOI: 10.6084/m9.figshare.5802669.v1
title: Supplemental Table S3 from A new stem group echinoid from the Triassic of China leads to a revised macroevolutionary history of echinoids during the end-Permian mass extinction

description: This table contains taxon counts and presence/ absence data for genera of echinoids used to produce Figure 3.
DOI: 10.6084/m9.figshare.5802672
title: Supplemental Nexus File 1 from A new stem group echinoid from the Triassic of China leads to a revised macroevolutionary history of echinoids during the end-Permian mass extinction

description: This is a nexus file showing character matrix and details and parameters of Bayesian phylogenetic analyses that correspond to Supplemental Table S1.
DOI: 10.6084/m9.figshare.5802672.v1
title: Supplemental Nexus File 1 from A new stem group echinoid from the Triassic of China leads to a revised macroevolutionary history of echinoids during the end-Permian mass extinction

description: This is a nexus file showing character matrix and details and parameters of Bayesian phylogenetic analyses that correspond to Supplemental Table S1.
DOI: 10.6084/m9.figshare.5802675
title: Supplemental Table S1 from A new stem group echinoid from the Triassic of China leads to a revised macroevolutionary history of echinoids during the end-Permian mass extinction

description: This is the character matrix used for most phylogenetic analyses run in the manuscript, where <i>Echinocystites ponum</i> was used as the outgroup.
DOI: 10.6084/m9.figshare.5802675.v1
title: Supplemental Table S1 from A new stem group echinoid from the Triassic of China leads to a revised macroevolutionary history of echinoids during the end-Permian mass extinction

description: This is the character matrix used for most phylogenetic analyses run in the manuscript, where <i>Echinocystites ponum</i> was used as the outgroup.
DOI: 10.6084/m9.figshare.5802678
title: Supplemental Table S2 from A new stem group echinoid from the Triassic of China leads to a revised macroevolutionary history of echinoids during the end-Permian mass extinction

description: This is the character matrix used to run analyses with <i>Palaeodiscus ferox</i> used as the outgroup
DOI: 10.6084/m9.figshare.5802678.v1
title: Supplemental Table S2 from A new stem group echinoid from the Triassic of China leads to a revised macroevolutionary history of echinoids during the end-Permian mass extinction

description: This is the character matrix used to run analyses with <i>Palaeodiscus ferox</i> used as the outgroup
DOI: 10.6084/m9.figshare.5803110
title: Historical population dataset for the conterminous US

description: This compressed file contains individual population data from five models (M1-M5) in Esri GRID format for each decade from 1790 to 2010 (excluding 1960).
DOI: 10.6084/m9.figshare.5803110.v1
title: Historical population dataset for the conterminous US

description: This compressed file contains individual population data from five models (M1-M5) in Esri GRID format for each decade from 1790 to 2010 (excluding 1960).
DOI: 10.6084/m9.figshare.5807634
title: MOESM1 of Comparative salivary proteomics analysis of children with and without dental caries using the iTRAQ/MRM approach

description: Additional file 1. List of proteins commonly identified by iTRAQ in all saliva samples.
DOI: 10.6084/m9.figshare.5807634.v1
title: MOESM1 of Comparative salivary proteomics analysis of children with and without dental caries using the iTRAQ/MRM approach

description: Additional file 1. List of proteins commonly identified by iTRAQ in all saliva samples.
DOI: 10.6084/m9.figshare.5807667
title: Additional file 2: of A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification

description: Descriptions of real world networks. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5807667.v1
title: Additional file 2: of A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification

description: Descriptions of real world networks. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5807676
title: MOESM3 of Comparative salivary proteomics analysis of children with and without dental caries using the iTRAQ/MRM approach

description: Additional file 3. Category list of differentially expressed proteins commonly or uniquely detected in HDC vs NDC, LDC vs NDC, and HDC vs LDC.
DOI: 10.6084/m9.figshare.5807676.v1
title: MOESM3 of Comparative salivary proteomics analysis of children with and without dental caries using the iTRAQ/MRM approach

description: Additional file 3. Category list of differentially expressed proteins commonly or uniquely detected in HDC vs NDC, LDC vs NDC, and HDC vs LDC.
DOI: 10.6084/m9.figshare.5807685
title: MOESM4 of Comparative salivary proteomics analysis of children with and without dental caries using the iTRAQ/MRM approach

description: Additional file 4. Category list of pathways involved by differentially expressed proteins in HDC vs NDC (1), LDC vs NDC (2), and HDC vs LDC (3).
DOI: 10.6084/m9.figshare.5807685.v1
title: MOESM4 of Comparative salivary proteomics analysis of children with and without dental caries using the iTRAQ/MRM approach

description: Additional file 4. Category list of pathways involved by differentially expressed proteins in HDC vs NDC (1), LDC vs NDC (2), and HDC vs LDC (3).
DOI: 10.6084/m9.figshare.5807688
title: Additional file 3: of A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification

description: FDA genes in directed PPI network. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.5807688.v1
title: Additional file 3: of A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification

description: FDA genes in directed PPI network. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.5807700
title: MOESM5 of Comparative salivary proteomics analysis of children with and without dental caries using the iTRAQ/MRM approach

description: Additional file 5. Detailed information from PPI analysis of 42 target proteins.
DOI: 10.6084/m9.figshare.5807700.v1
title: MOESM5 of Comparative salivary proteomics analysis of children with and without dental caries using the iTRAQ/MRM approach

description: Additional file 5. Detailed information from PPI analysis of 42 target proteins.
DOI: 10.6084/m9.figshare.5807706
title: Additional file 4: of A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification

description: Directed PPI interaction informations. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.5807706.v1
title: Additional file 4: of A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification

description: Directed PPI interaction informations. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.5807727
title: MOESM6 of Comparative salivary proteomics analysis of children with and without dental caries using the iTRAQ/MRM approach

description: Additional file 6. Relative protein abundances for 53 target proteins (1), and category list of these proteins commonly or uniquely detected in HDC vs NDC, LDC vs NDC, and HDC vs LDC using MRM (2).
DOI: 10.6084/m9.figshare.5807727.v1
title: MOESM6 of Comparative salivary proteomics analysis of children with and without dental caries using the iTRAQ/MRM approach

description: Additional file 6. Relative protein abundances for 53 target proteins (1), and category list of these proteins commonly or uniquely detected in HDC vs NDC, LDC vs NDC, and HDC vs LDC using MRM (2).
DOI: 10.6084/m9.figshare.5807733
title: Additional file 5: of A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification

description: Targets genes related with pancreatic. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5807733.v1
title: Additional file 5: of A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification

description: Targets genes related with pancreatic. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5807748
title: Additional file 6: of A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification

description: KEGG 244-pathways network related with IBD disease. (XLSX 2411Â kb)
DOI: 10.6084/m9.figshare.5807748.v1
title: Additional file 6: of A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification

description: KEGG 244-pathways network related with IBD disease. (XLSX 2411Â kb)
DOI: 10.6084/m9.figshare.5807763
title: Additional file 10: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Mouse organ or tissues RNA-seq mapping results. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.5807763.v1
title: Additional file 10: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Mouse organ or tissues RNA-seq mapping results. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.5807772
title: Additional file 7: of A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification

description: FDA genes in pathways network. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5807772.v1
title: Additional file 7: of A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification

description: FDA genes in pathways network. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5807784
title: Additional file 11: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: RNA editing sites of mouse organ or tissues. (XLS 215Â kb)
DOI: 10.6084/m9.figshare.5807784.v1
title: Additional file 11: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: RNA editing sites of mouse organ or tissues. (XLS 215Â kb)
DOI: 10.6084/m9.figshare.5807802
title: Additional file 1: Table S1. of A comprehensive study on cellular RNA editing activity in response to infections with different subtypes of influenza a viruses

description: The sources of deep-sequencing transcriptome data of hosts infected with different subtypes of influenza viruses. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.5807802.v1
title: Additional file 1: Table S1. of A comprehensive study on cellular RNA editing activity in response to infections with different subtypes of influenza a viruses

description: The sources of deep-sequencing transcriptome data of hosts infected with different subtypes of influenza viruses. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.5807805
title: Additional file 12: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: The number of RNA editing sites with mapped bases in mouse model infection with C. albicans. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.5807805.v1
title: Additional file 12: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: The number of RNA editing sites with mapped bases in mouse model infection with C. albicans. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.5807820
title: Additional file 13: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Distribution of RNA editing level of mouse organ or tissue. (XLS 27Â kb)
DOI: 10.6084/m9.figshare.5807820.v1
title: Additional file 13: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Distribution of RNA editing level of mouse organ or tissue. (XLS 27Â kb)
DOI: 10.6084/m9.figshare.5807823
title: Additional file 2: Figure S1. of A comprehensive study on cellular RNA editing activity in response to infections with different subtypes of influenza a viruses

description: Information of common editing sites. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.5807823.v1
title: Additional file 2: Figure S1. of A comprehensive study on cellular RNA editing activity in response to infections with different subtypes of influenza a viruses

description: Information of common editing sites. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.5807838
title: Additional file 14: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Correlation test between the genes expression of Adar and the normalized editing level of common editing sites in mouse. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.5807838.v1
title: Additional file 14: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Correlation test between the genes expression of Adar and the normalized editing level of common editing sites in mouse. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.5807847
title: Additional file 1: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: The data sets information of collected RNA seq sample. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.5807847.v1
title: Additional file 1: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: The data sets information of collected RNA seq sample. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.5807862
title: Additional file 2: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: RNA editing sites of OKF6 and HUVEC cell lines. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.5807862.v1
title: Additional file 2: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: RNA editing sites of OKF6 and HUVEC cell lines. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.5807871
title: Additional file 3: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Mouse organ or tissues RNA-seq mapping results. (XLS 13269Â kb)
DOI: 10.6084/m9.figshare.5807871.v1
title: Additional file 3: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Mouse organ or tissues RNA-seq mapping results. (XLS 13269Â kb)
DOI: 10.6084/m9.figshare.5807880
title: MOESM1 of Metabolic syndrome severity is significantly associated with future coronary heart disease in Type 2 diabetes

description: Additional file 1: Figure S1. Levels of the individual MetS components by timing of diabetes diagnosis. Model-generated values of A). waist circumference, B). systolic blood pressure, C). HDL-cholesterol, D). fasting triglycerides, and E). fasting glucose for participants with diabetes at baseline (Visit 1), and those diagnosed by Visits 2, 3, and 4, compared to those never diagnosed. All models were stratified by site and included age (at baseline), sex, and race as covariates. Figure S2. No-glucose MetS severity Z-scores by sex and race. Model-generated values for A). standard and B). no-glucose MetS severity Z-scores for participants with diabetes at baseline (Visit 1), and those diagnosed by Visits 2, 3, and 4, compared to those never diagnosed. All models were stratified by site and included age (at baseline), sex, and race as covariates.
DOI: 10.6084/m9.figshare.5807880.v1
title: MOESM1 of Metabolic syndrome severity is significantly associated with future coronary heart disease in Type 2 diabetes

description: Additional file 1: Figure S1. Levels of the individual MetS components by timing of diabetes diagnosis. Model-generated values of A). waist circumference, B). systolic blood pressure, C). HDL-cholesterol, D). fasting triglycerides, and E). fasting glucose for participants with diabetes at baseline (Visit 1), and those diagnosed by Visits 2, 3, and 4, compared to those never diagnosed. All models were stratified by site and included age (at baseline), sex, and race as covariates. Figure S2. No-glucose MetS severity Z-scores by sex and race. Model-generated values for A). standard and B). no-glucose MetS severity Z-scores for participants with diabetes at baseline (Visit 1), and those diagnosed by Visits 2, 3, and 4, compared to those never diagnosed. All models were stratified by site and included age (at baseline), sex, and race as covariates.
DOI: 10.6084/m9.figshare.5807889
title: Additional file 4: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Cell line RNA-editing Sites overlap with database. (XLS 27Â kb)
DOI: 10.6084/m9.figshare.5807889.v1
title: Additional file 4: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Cell line RNA-editing Sites overlap with database. (XLS 27Â kb)
DOI: 10.6084/m9.figshare.5807901
title: Additional file 5: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: The number of RNA editing sites in OKF6 and HUVEC infection with different time point and strains. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5807901.v1
title: Additional file 5: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: The number of RNA editing sites in OKF6 and HUVEC infection with different time point and strains. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5807910
title: Additional file 6: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Editing level of RNA editing sites in OKF6 and HUVEC infection with different time point and strains. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.5807910.v1
title: Additional file 6: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Editing level of RNA editing sites in OKF6 and HUVEC infection with different time point and strains. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.5807928
title: Additional file 7: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Editing level of RNA editing sites locate in stable expression genes. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5807928.v1
title: Additional file 7: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Editing level of RNA editing sites locate in stable expression genes. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5807937
title: Additional file 8: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Editing level of RNA editing sites locate in differentially expression genes. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.5807937.v1
title: Additional file 8: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Editing level of RNA editing sites locate in differentially expression genes. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.5807952
title: Additional file 9: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Correlation test between the genes expression of ADAR and the normalized editing level of common editing sites. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.5807952.v1
title: Additional file 9: of A survey on cellular RNA editing activity in response to Candida albicans infections

description: Correlation test between the genes expression of ADAR and the normalized editing level of common editing sites. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.5807958
title: Additional file 1 of Phased secondary small interfering RNAs in Panaxnotoginseng

description: Supplementary Tables. This is an MS Excel file with multiple sheets. This file includes 8 supplementary tables. (XLS 5603 kb)
DOI: 10.6084/m9.figshare.5807958.v1
title: Additional file 1 of Phased secondary small interfering RNAs in Panaxnotoginseng

description: Supplementary Tables. This is an MS Excel file with multiple sheets. This file includes 8 supplementary tables. (XLS 5603 kb)
DOI: 10.6084/m9.figshare.5807994
title: Additional file 1: Table S1. of Discovery of cell-type specific DNA motif grammar in cis-regulatory elements using random Forest

description: Datasets used in this study. The ENCODE data we used in this study with the information of TFs, cell-lines, reference genome, peak caller information and the GEO Accession ID. (XLS 42 kb)
DOI: 10.6084/m9.figshare.5807994.v1
title: Additional file 1: Table S1. of Discovery of cell-type specific DNA motif grammar in cis-regulatory elements using random Forest

description: Datasets used in this study. The ENCODE data we used in this study with the information of TFs, cell-lines, reference genome, peak caller information and the GEO Accession ID. (XLS 42 kb)
DOI: 10.6084/m9.figshare.5807997
title: Additional file 1: Table S1. of A chelicerate-specific burst of nonclassical Dscam diversity

description: Chelicerata species and their genome sources in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5807997.v1
title: Additional file 1: Table S1. of A chelicerate-specific burst of nonclassical Dscam diversity

description: Chelicerata species and their genome sources in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5808018
title: Additional file 2: Table S2. of A chelicerate-specific burst of nonclassical Dscam diversity

description: A list of Dscam homologues identified in Chelicerata species. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.5808018.v1
title: Additional file 2: Table S2. of A chelicerate-specific burst of nonclassical Dscam diversity

description: A list of Dscam homologues identified in Chelicerata species. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.5808051
title: Additional file 4: Table S3. of A chelicerate-specific burst of nonclassical Dscam diversity

description: RNA-seq datasets in Chelicerata species. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.5808051.v1
title: Additional file 4: Table S3. of A chelicerate-specific burst of nonclassical Dscam diversity

description: RNA-seq datasets in Chelicerata species. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.5808741
title: Historical Population Models

description: This compressed file contains models developed through ArcGIS Model Builder for reconstructing USA historical population maps, including five models (M1-M5), and the determination of census tract cutoff population, s and d parameter values.
DOI: 10.6084/m9.figshare.5812167
title: Additional file 10: of The invasive MED/Q Bemisia tabaci genome: a tale of gene loss and gene gain

description: KEGG enriched results of the sequences between MED/Q and MEAM1/B with Ka/Ks values &gt;â 1. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.5812167.v1
title: Additional file 10: of The invasive MED/Q Bemisia tabaci genome: a tale of gene loss and gene gain

description: KEGG enriched results of the sequences between MED/Q and MEAM1/B with Ka/Ks values &gt;â 1. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.5812194
title: Additional file 12: of The invasive MED/Q Bemisia tabaci genome: a tale of gene loss and gene gain

description: Orthologous gene families specific from MEAM1/B in the MED/Q. (XLS 57Â kb)