cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.000000033
title: Social organization in ungulates: revisiting Jarman's hypotheses

description: Ungulates (antelopes, deer and relatives) have some of the most diverse
 social systems among mammals. To understand the evolution of ungulate
 social organisation, Jarman (1974) proposed an ecological scenario of how
 distribution of resources, habitat and feeding style may have influenced
 social organisation. Although Jarman’s scenario makes intuitive sense and
 remain a textbook example of social evolution, it has not been scrutinised
 using modern phylogenetic comparative methods. Here we use 230 ungulate
 species from 10 families to test Jarman’s hypotheses using phylogenetic
 analyses. Consistently with Jarman’s proposition, both habitat and feeding
 style predict group size, since grazing ungulates typically live in open
 habitats and form large herds. Group size, in turn, has a knock-on effect
 on mating systems and sexual size dimorphism, since ungulates that live in
 large herds exhibit polygamy and extensive sexual size dimorphism.
 Phylogenetic confirmatory path analyses suggest that evolutionary changes
 in habitat type, feeding style and body size directly (or indirectly)
 induce shifts in social organisation. Taken together, these phylogenetic
 comparative analyses confirm Jarman’s conjectures, although they also
 uncover novel relationships between ecology and social organization.
 Further studies are needed to explore the relevance of Jarman (1974)
 scenario for mammals beyond ungulates.
DOI: 10.5061/dryad.1c59zw3v0
title: Data from: On the comparative biology of mammalian telomeres: telomere length co-evolves with body mass, lifespan and cancer risk

description: Telomeres, the short repetitive DNA sequences that cap the ends of linear
 chromosomes, shorten during cell division and are implicated in senescence
 in most species. Telomerase can rebuild telomeres but is repressed in many
 mammals that exhibit replicative senescence, presumably as a tumor
 suppression mechanism. It is therefore important to understand the
 co-evolution of telomere biology and life-history traits that has shaped
 the diversity of senescence patterns across species. Gomes et al. (2011)
 produced a large data set on telomere length (TL), telomerase activity,
 body mass and lifespan among 57 mammal species. We re-analyzed their data
 using the same phylogenetic multiple regressions and with several
 additional analyses to test the robustness of findings. We found
 substantial inconsistencies in our results compared to Gomes et
 al.'s. Consistent with Gomes et al. we found an inverse association
 between TL and lifespan. Contrary to the analyses in Gomes et al., we
 found a generally robust inverse association between TL and mass, and only
 weak non-robust evidence for an association between telomerase activity
 and mass. These results suggest that shorter TL may have been
 selected for in larger and longer-lived species – likely as a mechanism to
 suppress cancer. We support this hypothesis by showing that longer
 telomeres predict higher cancer risk across 22 species. Furthermore, we
 find that domesticated species have longer telomeres. Our results call
 into question past interpretations of the co-evolution of telomere biology
 and life-history traits and stress the need for careful attention to model
 construction.
description: The data is compiled from the literature as described in the
 methods section in the paper.
DOI: 10.5061/dryad.w6m905qp5
title: Offspring provisioning by extra-pair males in blue tits

description: Most birds are socially monogamous with both parents providing offspring
 care, but sometimes individuals are observed to provision at a nest that
 is not their own. One possible explanation for this behaviour is that it
 is a fitness maximising strategy by males who have copulated with the
 female and hence potentially sired extra-pair offspring in the focal nest.
 Over a period of 8 years and among a total of 854 nests, we observed 12
 blue tits Cyanistes caeruleus that provisioned at a nest that was not
 their own. In all cases, the provisioning individual was a male who had no
 nestlings of its own, either because its breeding attempt had failed
 (n=5), because it was a non-breeder (n=6) or because the eggs in its own
 nest had not hatched yet (n=1). Only two out of the 12 males had sired
 offspring in the nest where they helped, but most others had had
 interactions with the female during her presumed fertile period or were
 close neighbours, and hence may have performed extra-pair copulations that
 did not result in fertilisations. In 10 out of the 12 cases, the resident
 male was not present anymore, either because it had disappeared (n=7) or
 because it was socially polygynous and provided care at its other, primary
 nest (n=3). Our findings suggest that females can benefit from extra-pair
 copulations by obtaining help in raising their brood when they do not
 receive help from their social mate. Extra-pair copulations could thus
 function as an “insurance” strategy with a relatively small cost.
DOI: 10.5061/dryad.80gb5mkqn
title: Roundup causes high levels of mortality following contact exposure

description: 1. Pollinators underpin global food production, but they are suffering
 significant declines across the world. Pesticides are thought to be
 important drivers of these declines. Herbicides are the most widely
 applied type of pesticides and are broadly considered ‘bee safe’ by
 regulatory bodies who explicitly allow their application directly onto
 foraging bees. We aimed to test the mortality effects of spraying the
 world’s most popular herbicide brand (Roundup®) directly onto bumble bees
 (Bombus terrestris audax). 2. We used three Roundup® products, the
 consumer products Roundup® Ready-To-Use and Roundup® No Glyphosate, the
 agricultural product Roundup® ProActive, as well as another herbicide with
 the same active ingredient (glyphosate), Weedol®. Label recommended
 pesticide concentrations were applied to the bees using a Roundup®
 Ready-To-Use spray bottle. 3. Bees exhibited 94% mortality with Roundup®
 Ready-To-Use® and 30% mortality with Roundup® ProActive®, over 24 hours.
 Weedol® did not cause significant mortality, demonstrating that the active
 ingredient, glyphosate, is not the cause of the mortality. The 96%
 mortality caused by Roundup® No Glyphosate supports this conclusion.
 Dose-dependent mortality caused by Roundup® Ready-To-Use, further confirms
 its acute toxicity. Roundup® products caused comprehensive matting of bee
 body hair, suggesting that surfactants, or other co-formulants in the
 Roundup® products, may cause death by incapacitating the gas exchange
 system. 4. These mortality results demonstrate that Roundup® products pose
 a significant hazard to bees, in both agricultural and urban systems, and
 that exposure of bees to them should be limited. 5. Synthesis and
 applications. Surfactants, or other co-formulants, in herbicides and other
 pesticides may contribute to global bee declines. We recommend that, as a
 precautionary measure until co-formulant identities are made public, label
 guidelines for all pesticides be altered to explicitly prohibit
 application to plants when bees are likely to be foraging on them. As
 current regulatory topical exposure toxicity testing inadequately assesses
 toxicity of herbicide products, we call for pesticide companies to release
 the full list of ingredients for each pesticide formulation, as lack of
 access to this information hampers research to determine safe exposure
 levels for beneficial insects in agro-ecosystems.26-Feb-2021
description: This is the mortality data with the co-variates of microcolony
 and colony of origin.  Additionally example code for
 the analysis is included.
description: Seperate tabs per experiment.  Statistical
 code available on reasonable request
DOI: 10.5061/dryad.t76hdr80j
title: Boreal forest fertilization leads to functional homogenization of ground beetle assemblages

description: 1. Intensive fertilization of young spruce forest plantations (i.e.
 “nutrient optimization”) has the potential to meet increasing demands for
 carbon sequestration and biomass production from boreal forests. However,
 its effects on biodiversity, other than the homogenization of ground-layer
 plant communities, are widely unknown. 2. We sampled ground beetles
 (Coleoptera: Carabidae) in young spruce forest plantations of southern
 Sweden, within a large-scale, replicated ecological experiment initiated
 in 2012, where half of forest stands were fertilized every second year. We
 assessed multi-scale effects of forest fertilization on ground beetle
 diversity and community assembly, four years after commencement of the
 experiment. 3. We found that nutrient optimization had negative effects on
 ground beetle diversity at multiple spatial scales, despite having
 negligible effects on species richness. At the local scale, ground beetle
 species had lower variation in body size at fertilized sites, resulting in
 within-site functional homogenization. At the landscape scale, fertilized
 sites, with higher basal area and lower bilberry cover, filtered carabid
 traits composition to larger body sizes, generalist predators, and summer
 breeding species. 4. Synthesis and applications. Fertilization of young
 spruce plantations is a strong filter for ground beetle assemblages,
 leading to functionally homogeneous communities in the short term, without
 changes in species richness. The large-scale functional impoverishment of
 carabid communities because of fertilization may have negative
 consequences on system resilience and on ecosystem service provision by
 this functionally diverse group. Large-scale establishment of nutrient
 optimization threatens ground beetle diversity in young conifer
 plantations, underlining the risks of introducing more intensive
 management schemes in already heavily managed forest
 landscapes.26-Feb-2021
DOI: 10.5061/dryad.q83bk3jh9
title: Genome-wide markers redeem the lost identity of a heavily managed gamebird

description: Heavily managed wildlife may suffer from genetic homogenisation and
 reshuffling of locally adapted genotypes with non-native ones. This
 phenomenon often affects natural populations by reducing their
 evolutionary potential and speeding up the ongoing biodiversity crisis.
 For decades, the red-legged partridge (Alectoris rufa), an intensively
 managed gamebird of conservation concern and considerable socio-economic
 importance, has been subjected to extensive releases of farm-reared
 hybrids with the chukar partridge (A. chukar) and translocations
 irrespective of subspecific affinity. These practices have led to serious
 concerns that the genetic integrity and biogeographic structure of most
 red-legged partridge populations are irreversibly affected, as suggested
 by previous studies based on few genetic markers. Using over 168,000
 genome-wide loci and a sampling across the entire A. rufa range, we
 detected unexpectedly limited and spatially uneven chukar introgression as
 well as significant intraspecific structure. We demonstrate that species
 widely feared to have irretrievably lost their genetic identity are likely
 to be much less affected by unsuitable management practices than
 previously assumed. Our results spell the need for a radical re-think on
 animal conservation, possibly restoring native status to populations long
 treated as compromised. Our study exemplifies how the application of
 innovative conservation-genomic methods is key to solving wildlife
 management problems dealing with introgressive hybridisation worldwide.
description: The dataset is genome-wide Single Nucleotide Polymorphisms (SNPs)
 from 96 individuals of Alectoris patridges. Please refer to the
 publication and the supplimentery table for detailed sample
 information. 
description: The data are Stacks files and logs for the SNP calling. There are
 two zipped foulders include dataset of two Alectoris species and only
 Alectoris rufa respectively.
DOI: 10.5061/dryad.1ns1rn8t2
title: Aligned and reduced 5'-COI sequence alignment from Steinke et al. 2009

description: 1218 5'-COI DNA barcode sequences in NEXUS format used in
 Steinke et al. (2009). Data were retrieved from BOLD through the Workbench
 using the project name TZFPC. Sequences were filtered to include only
 those greater than or equal to 500 bp in length. Sequences were aligned
 using BOLD's custom amino acid Hidden Markov Model (HMM)
 aligner.
DOI: 10.5061/dryad.mgqnk98z8
title: Sizes and environmental variables to peccaries

description: Aim: Bergmann's rule is an ecogeographical rule that describes a
 negative relationship between body size and temperature. Here, we used a
 multivariate measure of skull size (centroid size) as a proxy for body
 size to test the influence of temperature, precipitation, elevation, human
 influence and competition on size in Dicotyles tajacu and Tayassu pecari.
 Location: American tropics and sub-tropics. Taxon: Tayassuidae. Methods:
 Using geometric morphometric methods, we measured 426 adult skulls of both
 peccary species from 174 different localities south of the equator and 83
 in the north. We explored the effects of temperature, precipitation,
 elevation and human influence, controlling for spatial autocorrelation,
 using ordinary least squares models and the Akaike information criterion.
 Size differences where the species occur allopatrically or sympatrically,
 where competition could be a factor, were investigated using ANCOVA
 models. Results: We found that peccaries were larger in the tropics.
 Temperature and precipitation explained the size variation of both
 peccaries in the southern hemisphere, whereas human influence is a
 predictor of size only for T. pecari. Size variation of northern D. tajacu
 is mainly explained by elevation and temperature. Tayassu pecari is
 consistently larger than D. tajacu in both hemispheres. Peccaries did not
 exhibit significant shifts in either rate of change in size or
 size–latitude relationships between allopatric and sympatric areas. Main
 conclusions: Geographical variation in size of these peccaries does not
 support Bergmann's rule. In the tropics, precipitation and human
 influence appear to exert strong selective pressures on body size of
 peccaries, whose resource utilization patterns are shaped by group living.
 Size differences of the two species across the continents may contribute
 to their stable coexistence via interference rather than exploitative
 competition.
DOI: 10.6084/m9.figshare.29946917
title: MetS_factors_and_lifestyle_factors_Nagasaki_University_students_2023_4grades.csv

description: This dataset contains anonymized data collected from fourth-year students at Nagasaki University in the academic year 2023, who provided written informed consent to participate in the study. The dataset includes:<b>Biochemical test results</b>: fasting and casual blood tests (e.g., triglycerides, HDL-C, plasma glucose)<b>Anthropometric and body composition measures</b>: height, weight, BMI, waist circumference, intra-abdominal fat area (IAFA)<b>Lifestyle</b><b> data from </b><b>questionnaire</b>: dietary habits (frequency of breakfast, dining out, alcohol consumption, smoking), physical and social activities, sleep habits, internet/gaming time, and psychological scale scores (mental health, sleep quality, IGDT-10, GAD-7).All data were de-identified prior to sharing, and no personally identifiable information (such as names or student IDs) is included. The dataset is provided in CSV format to facilitate reuse and reproducibility.
DOI: 10.6084/m9.figshare.29946917.v1
title: MetS_factors_and_lifestyle_factors_Nagasaki_University_students_2023_4grades.csv

description: This dataset contains anonymized data collected from fourth-year students at Nagasaki University in the academic year 2023, who provided written informed consent to participate in the study. The dataset includes:<b>Biochemical test results</b>: fasting and casual blood tests (e.g., triglycerides, HDL-C, plasma glucose)<b>Anthropometric and body composition measures</b>: height, weight, BMI, waist circumference, intra-abdominal fat area (IAFA)<b>Lifestyle</b><b> data from </b><b>questionnaire</b>: dietary habits (frequency of breakfast, dining out, alcohol consumption, smoking), physical and social activities, sleep habits, internet/gaming time, and psychological scale scores (mental health, sleep quality, IGDT-10, GAD-7).All data were de-identified prior to sharing, and no personally identifiable information (such as names or student IDs) is included. The dataset is provided in CSV format to facilitate reuse and reproducibility.
DOI: 10.15468/dl.y27xcx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opisthoproctus Vaillant, 1888",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.9648 -16.1504,17.9648 -16.1504,17.9648 -25.1504,26.9648 -25.1504,26.9648 -16.1504))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011070-250525065834625/datasets/export for details.
DOI: 10.15468/dl.f5zggc
title: Occurrence Download

description: A dataset containing 25684 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Brachypodium pinnatum (L.) P.Beauv.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 25684 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011071-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z22vaj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opisthoproctus Vaillant, 1888",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.9648 10.8496,17.9648 10.8496,17.9648 1.8496,26.9648 1.8496,26.9648 10.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011072-250525065834625/datasets/export for details.
DOI: 10.15468/dl.kwxm5k
title: Occurrence Download

description: A dataset containing 242498 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Buddleja davidii Franch.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 242498 records from 1577 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011063-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdzyu8
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leiocephalus rhutidira"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008599-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzg4sy
title: Occurrence Download

description: A dataset containing 9663 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blicca bjoerkna",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2020",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 9663 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008602-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xt8y9
title: Occurrence Download

description: A dataset containing 770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tordylium apulum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 770 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008601-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wyduv
title: Occurrence Download

description: A dataset containing 116901 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The mammals collection (ZM) of the Muséum national d'Histoire naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 116901 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008592-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18357046
title: Sumatera Barat Macro Data
DOI: 10.5281/zenodo.18357047
title: Sumatera Barat Macro Data
DOI: 10.34740/kaggle/dsv/14598124
title: Species_composition_synanthropic
DOI: 10.15468/dl.evumpg
title: Occurrence Download

description: A dataset containing 177124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "Geometry POLYGON((-161.69 60.94,-135.81 60.94,-135.81 66.62,-161.69 66.62,-161.69 60.94))",
 "HasCoordinate is true",
 "License is one of (CC-BY-NC 4.0, CC-BY 4.0, CC0 1.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 177124 records from 260 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008508-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjdr5k
title: Occurrence Download

description: A dataset containing 423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blicca bjoerkna",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2025",
 "Year is less than or equal to 2026"
 ]
}

 The dataset includes 423 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008605-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6mvgr
title: Occurrence Download

description: A dataset containing 4678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Torilis arvensis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 4678 records from 281 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008606-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29400164
title: Dried shrimp production

description: Dried shrimp production in Thailand
DOI: 10.6084/m9.figshare.29400164.v1
title: Dried shrimp production

description: Dried shrimp production in Thailand