cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.821659
title: Pre-Processed B Cell Receptor Sequences From Bioproject Prjna349143

description: Processed sequencing data from BioProject PRJNA349143.

<strong>Study Design</strong>

Samples were collected from human volunteers as described in Laserson and Vigneault et al, 2014 (1). Briefly, blood samples were collected from three individuals both pre- and post-vaccination for seasonal influenza. Samples were collected for sequencing at time points -8 days, -2 days, -1 hour, +1 hour, +1 day, +3 days, +7 days, +14 days, +21 days and +28 days relative to injection with seasonal influenza vaccine.

<strong>Library Preparation and Sequencing</strong>

The original samples from Laserson and Vigneault et al, 2014 (1) were re-sequenced as described in Gupta et al, 2017 (2). Briefly, sequencing libraries were prepared from mRNA using 5'RACE with addition of 17-nucleotide unique molecular identifiers (UMIs). Amplification was performed using constant region primers specific to IGHA, IGHD, IGHE, IGHG, IGHM, IGKC and IGLC. Sequencing was conducted on the Illumina MiSeq platform using the 600 cycle kit with 325 cycles for read 1 and 275 cycles for read 2. A 10% PhiX spike-in was added for sequencing.

<strong>Data Processing</strong>

Sequences were processed using the pRESTO (3) and Change-O (4) toolkits as described in Gupta et al, 2017 (2).

Note, the provided data has been filtered significantly, including the removal of sequences that fail V(D)J alignment and the exclusion of non-functional sequences.

<strong>Format</strong>

Processed sequences are provided in FASTA format annotated using the pRESTO scheme.

Annotations included are as follows:


	<strong>CONSCOUNT:</strong> Raw read count from which UMI consensus sequences were generated, summed over all UMIs for the given unique sequence.
	<strong>DUPCOUNT:</strong> UMI count for the given unique sequence.
	<strong>PRCONS:</strong> Constant region primer (isotype).
	<strong>SUBJECT:</strong> Subject identifier.
	<strong>TIME_POINT:</strong> Time point label.


<strong>Citations</strong>


	Laserson U and Vigneault F, et al. High-resolution antibody dynamics of vaccine-induced immune responses. Proc Natl Acad Sci USA 111, 4928-33 (2014).
	Gupta NT, et al. Hierarchical Clustering Can Identify B Cell Clones with High Confidence in Ig Repertoire Sequencing Data. J Immunol 1601850 (2017).
	Vander Heiden JA and Yaari G, et al. pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires. Bioinformatics 30, 1930–2 (2014).
	Gupta NT and Vander Heiden JA, et al. Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data. Bioinformatics 31, 3356–8 (2015).
DOI: 10.5517/ccdc.csd.cc1lxz6p
title: CCDC 1487603: Experimental Crystal Structure Determination

description: Related Article: S.I. Pechenyuk, A.A. Zolotarev, A.N. Gosteva, D.P. Domonov, A.A. Shimkin|2017|J.Mol.Struct.|1147|388|doi:10.1016/j.molstruc.2017.06.099
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lxz7q
title: CCDC 1487604: Experimental Crystal Structure Determination

description: Related Article: S.I. Pechenyuk, A.A. Zolotarev, A.N. Gosteva, D.P. Domonov, A.A. Shimkin|2017|J.Mol.Struct.|1147|388|doi:10.1016/j.molstruc.2017.06.099
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lxz8r
title: CCDC 1487605: Experimental Crystal Structure Determination

description: Related Article: S.I. Pechenyuk, A.A. Zolotarev, A.N. Gosteva, D.P. Domonov, A.A. Shimkin|2017|J.Mol.Struct.|1147|388|doi:10.1016/j.molstruc.2017.06.099
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/hsp9f6vttf.1
title: Model Validation for EMS Submission

description: GAMS Code for A Planting Tool for Tree Species Selection and Planting Schedule in Forestation Projects Considering Environmental and Socio-Economic Benefits
DOI: 10.17632/hsp9f6vttf.2
title: Model Validation for EMS Submission

description: GAMS Code for A Planting Tool for Tree Species Selection and Planting Schedule in Forestation Projects Considering Environmental and Socio-Economic Benefits
DOI: 10.5517/ccdc.csd.cc1lzdvt
title: CCDC 1488987: Experimental Crystal Structure Determination

description: Related Article: Yu Qiao, Yan-Feng Zhou, Wei-Sheng Guan, Li-Hui Liu, Bo Liu, Guang-Bo Che, Chun-Bo Liu, Xue Lin, En-Wei Zhu|2017|Inorg.Chim.Acta|466|291|doi:10.1016/j.ica.2017.06.018
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lzdwv
title: CCDC 1488988: Experimental Crystal Structure Determination

description: Related Article: Yu Qiao, Yan-Feng Zhou, Wei-Sheng Guan, Li-Hui Liu, Bo Liu, Guang-Bo Che, Chun-Bo Liu, Xue Lin, En-Wei Zhu|2017|Inorg.Chim.Acta|466|291|doi:10.1016/j.ica.2017.06.018
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15785/sbgrid/431
title: X-Ray Diffraction data from Human thrombin - A. gambiae cE5 complex, source of 5NHU structure

description: X-ray diffraction data from human thrombin - A. gambiae cE5 complex, source of structure 5NHU - dataset 2
DOI: 10.17632/25k3hhhyng.1
title: Test Sample

description: This is test data .
DOI: 10.17632/25k3hhhyng.2
title: Test Sample

description: This is test data . ... test version 2 ..
DOI: 10.17632/gn8w3hk756.1
title: Janghang Korea Dataset

description: Soils were collected along the vicinity of a copper and gold smelter in Janghang town located in Seocheon County in South Chungcheong Province, South Korea. Soil samples were collected at a depth of 0-30 cm from paddy soils located at three different locations and were named based on their distances from the refinery center. Site 1 was located 260 m from the smelter and contained high levels of arsenic.Site 2 was located 240 m from the smelter and contained highest levels of arsenic because of its vicinity to the smelter. Site 3 consisted of rice paddy soil located 3500 m from the smelter and represented an area of low contamination.Soil sampling was done from three randomly selected areas within each site. Each area represented a replicate sample of a single site, and consisted of top and sub soils from three adjacent spots which were approximately 1 m away from each other.The data set contain the raw files obtained after pyrosequencing for each site.
DOI: 10.17632/v6nx9yrwrx.1
title: Chitosan Schiff base Ruthenium(III) complexes

description: Chitosan can be modified chemically by condensation reaction of deacetylated chitosan with aldehydein homogeneous phase. This condensation is carried by primary amine ( NH2) with aldehyde ( CHO)to form corresponding schiff base. The chitosan biopolymer schiff base derivatives are synthesized withsubstituted aldehydes namely 4-hydroxy-3-methoxy benzaldehyde, 2-hydroxy benzaldehyde, and 2-hydroxy-3-methoxy benzaldehyde, becomes a complexing agent or ligand. The Ruthenium(III) complexeswere obtained by complexation of Ruthenium with schiff base ligands and this product exhibits as anexcellent solubility and more biocompatibility. The novel series of schiff base Ruthenium(III) complexesare characterized by Elemental analysis, FT-IR spectroscopy, and Thermo-gravimetric analysis (TGA). Thesynthesized complexes have been subjected to antibacterial study. The antibacterial results indicated thatthe antibacterial activity of the complexes were more effective against Gram positive and Gram negativepathogenic bacteria. These findings are giving suitable support for developing new antibacterial agentand expand our scope for applications.
DOI: 10.5281/zenodo.821879
title: Test A For The Icdar2017 Competition On Handwritten Text Recognition On The Read Dataset (Icdar2017 Htr)

description: <strong>Test A. </strong>A batch of page images annotated with baselines.
DOI: 10.17632/r6skswb8s4.1
title: Packet Reception Data for Single-hop Wireless Multicasting

description: This data-set consist of cleaned raw data for packet reception status for the case of single-hop wireless multicasting, and summary of the analysis of various clustering algorithms. The set up of our experiment is that we have a single transmitter multicasting packets to multiple receivers over a single-hop. By first collecting packet reception status (NACK/ ACK) of the transmitted packets from all receivers, we then apply machine learning algorithms to estimate which packet has not been received by a receiver. This serves towards minimizing the transmission of NACK/ ACK, and hence improves the reliability and throughput of the wireless network. Documentation of the data set is also provided in the file titled "Documentation.pdf".
DOI: 10.17632/rntn6wb33f.1
title: MATLAB GUI for Data Mining and DSS (Project scope)

description: The application of data mining to environmental monitoring has become crucial for a number of tasks related to emergency management. Over recent years, many tools have been devel- oped for decision support system (DSS) for emergency man- agement. In this Chapter a contribution to data mining as a graphical user interface (GUI) for environmental monitoring system is presented. This interface allows accomplishing (i) data collection and observation, (ii) extraction for data mining and (iii) supporting decision making. We use mathematical models for data analysis and decision making. This tool may be the basis for future development along the line of the Open Source Software paradigm. The work is based on a project contribution, we show our work according to three aspects; data mining, decision support system (DSS), and environmen- tal monitoring system (ENMS). The main contribution of this Chapter is a Graphical User Interface (GUI) as a tool for en- vironmental management applications. This Chapter is with a practical aspect to environmental monitoring systems and the theoretical contributions is according to developing mathemat- ical models for emergency management. We use Matlab for developing the models and all the work has been implemented practically in the proposed project MATLAB GUI for Data Mining and DSS (Project scope). Available from: https://www.researchgate.net/publication/275715041_MATLAB_GUI_for_Data_Mining_and_DSS_Project_scope [accessed Jul 3, 2017].
DOI: 10.5517/ccdc.csd.cc102w76
title: CCDC 926287: Experimental Crystal Structure Determination

description: Related Article: Lingfeng Dong, Shouwen Jin, Yining Wang, Xinxin Xie, Bin Liu, Daqi Wang|2017|J.Mol.Struct.|1146|837|doi:10.1016/j.molstruc.2017.06.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1162y8
title: CCDC 959169: Experimental Crystal Structure Determination

description: Related Article: Lingfeng Dong, Shouwen Jin, Yining Wang, Xinxin Xie, Bin Liu, Daqi Wang|2017|J.Mol.Struct.|1146|837|doi:10.1016/j.molstruc.2017.06.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc118cwk
title: CCDC 961368: Experimental Crystal Structure Determination

description: Related Article: Lingfeng Dong, Shouwen Jin, Yining Wang, Xinxin Xie, Bin Liu, Daqi Wang|2017|J.Mol.Struct.|1146|837|doi:10.1016/j.molstruc.2017.06.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1kj3nv
title: CCDC 1445457: Experimental Crystal Structure Determination

description: Related Article: Lingfeng Dong, Shouwen Jin, Yining Wang, Xinxin Xie, Bin Liu, Daqi Wang|2017|J.Mol.Struct.|1146|837|doi:10.1016/j.molstruc.2017.06.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1klrhd
title: CCDC 1447994: Experimental Crystal Structure Determination

description: Related Article: Lingfeng Dong, Shouwen Jin, Yining Wang, Xinxin Xie, Bin Liu, Daqi Wang|2017|J.Mol.Struct.|1146|837|doi:10.1016/j.molstruc.2017.06.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lkcyg
title: CCDC 1476466: Experimental Crystal Structure Determination

description: Related Article: Lingfeng Dong, Shouwen Jin, Yining Wang, Xinxin Xie, Bin Liu, Daqi Wang|2017|J.Mol.Struct.|1146|837|doi:10.1016/j.molstruc.2017.06.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1m3c03
title: CCDC 1492774: Experimental Crystal Structure Determination

description: Related Article: Lingfeng Dong, Shouwen Jin, Yining Wang, Xinxin Xie, Bin Liu, Daqi Wang|2017|J.Mol.Struct.|1146|837|doi:10.1016/j.molstruc.2017.06.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1m3c14
title: CCDC 1492775: Experimental Crystal Structure Determination

description: Related Article: Lingfeng Dong, Shouwen Jin, Yining Wang, Xinxin Xie, Bin Liu, Daqi Wang|2017|J.Mol.Struct.|1146|837|doi:10.1016/j.molstruc.2017.06.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1m3c25
title: CCDC 1492776: Experimental Crystal Structure Determination

description: Related Article: Lingfeng Dong, Shouwen Jin, Yining Wang, Xinxin Xie, Bin Liu, Daqi Wang|2017|J.Mol.Struct.|1146|837|doi:10.1016/j.molstruc.2017.06.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1m3c47
title: CCDC 1492778: Experimental Crystal Structure Determination

description: Related Article: Lingfeng Dong, Shouwen Jin, Yining Wang, Xinxin Xie, Bin Liu, Daqi Wang|2017|J.Mol.Struct.|1146|837|doi:10.1016/j.molstruc.2017.06.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1m3yrf
title: CCDC 1493355: Experimental Crystal Structure Determination

description: Related Article: Michał Antoszczak, Jan Janczak, Jacek Rutkowski, Bogumił Brzezinski, Adam Huczyński|2017|J.Mol.Struct.|1147|197|doi:10.1016/j.molstruc.2017.06.114
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1m6ls6
title: CCDC 1495898: Experimental Crystal Structure Determination

description: Related Article: Laysa P. de Figueiredo, Amanda L. Ibiapino, Daniel N. do Amaral, Letícia S. Ferraz, Tiago Rodrigues, Eliezer J. Barreiro, Lídia M. Lima, Fabio F. Ferreira|2017|J.Mol.Struct.|1147|226|doi:10.1016/j.molstruc.2017.06.093
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.21335/nmdc-imr.2017-0001
title: IMR mooring data IMR_1989001

description: The dataset includes Institute of Marine Research data from mooring IMR_1989001 situated below the current Askøy bridge prior to it being build. Instrument type Aanderaa RCM 4, serial number 247, measuring at 6m depth below surface.
DOI: 10.17632/h4rtjx4w2h.2
title: Data for comparative analysis on the physicochemical properties of tick-borne encephalitis virus envelope protein residues that affect its antigenic properties
DOI: 10.5517/ccdc.csd.cc1ny0p9
title: CCDC 1547231: Experimental Crystal Structure Determination

description: Related Article: Liying Meng, Xinglong Zhou, Yingying Chai, Changfu Li, Jiang Liu, Qianming Chen, Weimin Li, Hang Zhao, Yang He|2017|J.Mol.Struct.|1147|161|doi:10.1016/j.molstruc.2017.06.097
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1nyq2d
title: CCDC 1547894: Experimental Crystal Structure Determination

description: Related Article: Simone Sarno, Angelo M. Manzo, Davide M. Ferraris, Riccardo Miggiano, Menico Rizzi, Luca Palin, Enrico Boccaleri, Marco Milanesio|2017|J.Mol.Struct.|1147|810|doi:10.1016/j.molstruc.2017.06.106
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1nys8n
title: CCDC 1547962: Experimental Crystal Structure Determination

description: Related Article: Simone Sarno, Angelo M. Manzo, Davide M. Ferraris, Riccardo Miggiano, Menico Rizzi, Luca Palin, Enrico Boccaleri, Marco Milanesio|2017|J.Mol.Struct.|1147|810|doi:10.1016/j.molstruc.2017.06.106
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pc9dr
title: CCDC 1559994: Experimental Crystal Structure Determination

description: Related Article: Andrei S. Batsanov|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/yv8rsf4xx6.1
title: Data for: The influence of Auditory-Visual Speech and Clear Speech on Cross-Language Perceptual Assimilation

description: The supplementary material contains a sample of the auditory-visual stimuli presented to participants. These recordings are of the Sindhi implosive retroflex stop /ᶑ/, in clear and citation speech, produced by a 35-year-old female native Sindhi speaker, from Radhan, Pakistan.
DOI: 10.5281/zenodo.822493
title: Pre-Processed Turbidity-Temperature Reads For Project Tlcst

description: dataset.csv -----------

V1: filename for the raw file

V2: protein concentration in uM

V3: rna concentration in ug/mL

V4: nacl concentration in mM

protien MW = 22000 g/mol

results.csv --------------------

output from the following pipeline

dataset2cloudpoint.R

https://github.com/yanxianUCSB/jascorscript/tree/master/jws2cloudpoint

requirement: R &gt;= 3.3.0
DOI: 10.5281/zenodo.822494
title: Pre-Processed Turbidity-Temperature Reads For Project Tlcst

description: dataset.csv -----------

V1: filename for the raw file

V2: protein concentration in uM

V3: rna concentration in ug/mL

V4: nacl concentration in mM

protien MW = 22000 g/mol

results.csv --------------------

output from the following pipeline

dataset2cloudpoint.R

https://github.com/yanxianUCSB/jascorscript/tree/master/jws2cloudpoint

requirement: R &gt;= 3.3.0