cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.h8972.2/1.2
title: Video_S1

description: MPEG video clip of the mating behaviour of Parapolycope spiralis (Ostracoda). Stage 1: male captures female by sucker on the antennula.
DOI: 10.5061/dryad.h8972.2/2.2
title: Video_S2

description: MPEG video clip of the mating behaviour of Parapolycope spiralis (Ostracoda). Stage 2: male (right side) clasps female (left side) and maintains the mating position by the endopodite, endopodite claw, and exopodite of the antenna.
DOI: 10.5061/dryad.h8972.2/3.2
title: Video_S3

description: MPEG video clip of the mating behaviour of Parapolycope spiralis (Ostracoda). Stage 3: male (upper side) repeatedly makes contact with the lateral side of female (lower side) posterior body, by the distal part of upper lip. Male upper lip is viewable (00:05 and 00:31).
DOI: 10.5061/dryad.h8972.2/4.2
title: Video_S4

description: MPEG video clip of the mating behaviour of Parapolycope spiralis (Ostracoda). Stage 4:male (right side) flexes the posterior of its body back and forth and then inserts the ejaculatory duct into the female (left side) genital opening, in reversed ventral-ventral mating position. Anterior of the male is in the direction of the lower left of the screen. Anterior of the female is in the direction of the upper left corner of the screen.
DOI: 10.5061/dryad.j251f/1
title: Williams et al 2015_Genotypes

description: Microsatellite genotypes presented in Cervus input format for all 14 markers used in the study. “Pop” corresponds to the populations as referred to in the manuscript
DOI: 10.5061/dryad.j3k0q/1
title: Welsh sheep Illumina 50K genotyping results and phylogenetic trees

description: 50K Illumina SNP array data .ped and .map files and complete phylogenetic tree files used in our paper
DOI: 10.5061/dryad.pk944/1
title: GenePop File Format (C. ludovicianus and C. mexicanus)

description: File containing the GenePop format for reads obtained for 10 microsatellite loci amplified for Cynomys ludovicianus from Chihuahua and Sonora, and Cynomys mexicanus from 6 colonies throughout its range.
DOI: 10.5061/dryad.q06c4/1
title: Table S1

description: Microsatellite loci in Bombus terrestris typed in multiplex reactions in this study. Table contains list of primers for respective loci as well as information on the labelling dye used.
DOI: 10.5061/dryad.q06c4/2
title: Table S2

description: Table S2– Microsatellite allele frequencies in populations of Bombus terrestris from 22 European sites and two commercial populations. Population codes are represented in the first row and number of individuals genotyped for each microsatellite locus are presented in parentheses. Observed (Ho) and expected (He) heterozygosities and allelic richness are presented for each locus and population. The column on the left represents the allele sizes.
DOI: 10.5061/dryad.q06c4/3
title: Table S3

description: Table S3 – Genetic differentiation between European and commercial populations of Bombus terrestris. Pairwise Fst is presented above the diagonal with corresponding Euclidean geographical distances (km) between sites presented below the diagonal
DOI: 10.5061/dryad.q06c4/4
title: Table S4

description: Table S4 – STRUCTURE assignments of population probability to membership of K = 3 clusters and K = 7 clusters.
DOI: 10.5061/dryad.q06c4/5
title: Table S5

description: Table S5 – Correlations between genetic and geographic distance, as measured by Rousset’s distance (Fst/1-Fst) and the natural logarithm of geographical separation for Bombus terrestris
DOI: 10.5061/dryad.q06c4/6
title: Table S6

description: Table S6 – Migration rates among B. terrestris populations estimated using BAYESASS. Values shown are the means of the posterior distributions of m, the migration rate into each population, and their respective 95% CI in parenthesis. Values along the diagonal (in bold) are the proportion of individuals derived from the source population each generation. The expected mean and CI of non-migrants is 0.833 (0.675, 0.992), the expected mean and CI for migration is 0.013 (1.31x10-15, 0.104).
DOI: 10.5061/dryad.r6m04/20
title: MESO12.1.fastq
DOI: 10.5061/dryad.r6m04/21
title: MESO12.2.fastq
DOI: 10.5061/dryad.r6m04/22
title: MESO3.2.fastq
DOI: 10.5061/dryad.r6m04/23
title: MESO10.2.fastq
DOI: 10.5061/dryad.r6m04/24
title: MESO8.2.fastq
DOI: 10.5061/dryad.r6m04/25
title: OTUs
DOI: 10.5061/dryad.r6m04/27
title: OTU_Summary_Table
DOI: 10.5061/dryad.s0b14/1
title: Rearing group size determines social competence and brain structure in a cooperatively breeding cichlid

description: Each work sheet represents the data for the experience phase, social challenge test, brain analysis and size measurements. For details on column headings see comments.
DOI: 10.5061/dryad.v020j/1
title: 1750 moth 9 loci_Microsatellite data
DOI: 10.5061/dryad.v020j/3
title: Concatenated mtDNA alignments

description: File is in MEGA format
DOI: 10.5061/dryad.v020j/4
title: mtDNA_concatenated.(time)
DOI: 10.5061/dryad.v020j/6
title: Geographic distance for Isolation by Distance
DOI: 10.5061/dryad.v025v/1
title: Browne et al 2015 genetic data

description: Contains genetic data in comma separate value (csv) format at 10 microsatellite loci for adult trees, beneath seedlings, and dispersed seedlings, located in a 130 ha study parcel at Bilsa Biological Reserve (BBS) and 6 surrounding forest fragments, Ecuador. The geographic coordinates of each sample are also included.
DOI: 10.5061/dryad.35vf4/1
title: Adult Skull Landmark Data

description: This file contains raw landmark coordinates for adult mouse skulls.
DOI: 10.5061/dryad.35vf4/2
title: Neonatal Skull Landmark Data

description: This file contains raw landmark coordinates for neonatal mouse skulls.
DOI: 10.5061/dryad.3mb30/1
title: dataset of choices per phase

description: This dataset contains the raw choices, response times, budgets and spent nosepokes for all rat/session combinations, per phase. See ReadMe for details.
DOI: 10.5061/dryad.4q78p/1
title: README: Overview

description: This package contains a copy of the data files used for this paper.
DOI: 10.5061/dryad.4q78p/2
title: Genotype_DGC_Latitude_Longitude

description: Details of the northern, southern (or central) DGC (where available), and the original latitude and longitude of the trees cloned and planted in the common gardens.
DOI: 10.5061/dryad.4q78p/3
title: Southern_garden_all_genotypes_abundances

description: Herbivorous arthropod morphospecies (numbered as they appear in Table 2 of the manuscript) as mean counts on aspen genotypes in the southern common garden.
DOI: 10.5061/dryad.4q78p/4
title: Northern_garden_all_genotypes_abundances

description: Herbivorous arthropod morphospcies (numbered as they appear in Table 2 of the manuscript) as mean counts on aspen genotypes in the northern common garden.
DOI: 10.5061/dryad.5rm6d/7
title: Trebouxia clade 'I' ITS alignment

description: Alignment of all Trebouxia ITS sequences belonging to the T. impressa/gelatinosa clade
DOI: 10.5061/dryad.64687/1
title: LD4_Read1.fastq

description: Raw sequences, Leech diet study, Pool 4, Read 1.
DOI: 10.5061/dryad.64687/11
title: LD6_Read1.fastq

description: Raw sequences, Leech diet study, Pool 6, Read 1.
DOI: 10.5061/dryad.64687/12
title: LD6_Read2.fastq

description: Raw sequences, Leech diet study, Pool 6, Read 2.
DOI: 10.5061/dryad.64687/13
title: BD1_Read1.fastq

description: Raw sequences, Bat diet study, Pool 1, Read 1
DOI: 10.5061/dryad.64687/14
title: BD1_Read2.fastq

description: Raw sequences, Bat diet study, Pool 1, Read 2
DOI: 10.5061/dryad.64687/15
title: BD2_Read1.fastq

description: Raw sequences, Bat diet study, Pool 2, Read 1
DOI: 10.5061/dryad.64687/2
title: LD4_Read2.fastq

description: Raw sequences, Leech diet study, Pool 4, Read 2.
DOI: 10.5061/dryad.64687/3
title: LD5_Read1.fastq

description: Raw sequences, Leech diet study, Pool 5, Read 1.
DOI: 10.5061/dryad.64687/4
title: LD5_Read2.fastq

description: Raw sequences, Leech diet study, Pool 5, Read 2.
DOI: 10.5061/dryad.728b4.2
title: Data from: The evolutionary history of Xiphophorus fish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing
DOI: 10.5061/dryad.728b4.2/1.2
title: m8_species_15

description: SNP matrix file for species level analyses (maximum 8 mismatches allowed for hstacks processing and including a minimum number of 15 species).
DOI: 10.5061/dryad.728b4.2/2.2
title: m8_species_20

description: SNP matrix file for species level analyses (maximum 8 mismatches allowed for hstacks processing and including a minimum number of 20 species).
DOI: 10.5061/dryad.728b4.2/3.2
title: m8_species_25

description: SNP matrix file for species level analyses (maximum 8 mismatches allowed for hstacks processing and including a minimum number of 25 species).
DOI: 10.5061/dryad.728b4.2/4.2
title: m5_species_15

description: SNP matrix file for species level analyses (maximum 5 mismatches allowed for hstacks processing and including a minimum number of 15 species).
DOI: 10.5061/dryad.728b4.2/5.2
title: m5_species_20

description: SNP matrix file for species level analyses (maximum 5 mismatches allowed for hstacks processing and including a minimum number of 20 species).
DOI: 10.5061/dryad.728b4.2/6.2
title: m5_species_25

description: SNP matrix file for species level analyses (maximum 5 mismatches allowed for hstacks processing and including a minimum number of 25 species).
DOI: 10.5061/dryad.8p007/1
title: Data_male-song_female-preference_JEB-2014-00690-R2-Accept

description: Male song data and female preference scores for all tests discussed in the manuscript.
DOI: 10.5061/dryad.cb5h8/1
title: Guillemot measurements

description: Biometry, phenology and CORT measurements of adult and juvenile common guillemots on Hornøya
DOI: 10.5061/dryad.cb5h8/2
title: Cod larvae abundances

description: Abundances and weights of cod larvae from different spawning grounds around the guillemot colony at Hornøya, by date and year
DOI: 10.5061/dryad.ct231/10
title: r8s angio-200

description: PL tree (with 95% credibility intervals for age estimates) of the angio-200 analysis with r8s.
DOI: 10.5061/dryad.ct231/3
title: BEAST angio-150

description: MCC tree of the angio-150 analysis with BEAST.
DOI: 10.5061/dryad.ct231/4
title: BEAST angio-170

description: MCC tree of the angio-170 analysis with BEAST.
DOI: 10.5061/dryad.ct231/5
title: BEAST angio-200

description: MCC tree of the angio-200 analysis with BEAST.
DOI: 10.5061/dryad.ct231/6
title: r8s angio-130

description: PL tree (with 95% credibility intervals for age estimates) of the angio-130 analysis with r8s.
DOI: 10.5061/dryad.ct231/7
title: r8s angio-140

description: PL tree (with 95% credibility intervals for age estimates) of the angio-140 analysis with r8s.
DOI: 10.5061/dryad.ct231/8
title: r8s angio-150

description: PL tree (with 95% credibility intervals for age estimates) of the angio-150 analysis with r8s.
DOI: 10.5061/dryad.ct231/9
title: r8s angio-170

description: PL tree (with 95% credibility intervals for age estimates) of the angio-170 analysis with r8s.
DOI: 10.5061/dryad.j13m3/1
title: Consensus_tree

description: A nexus file containing the majority rule consensus tree produced from 40,000 post burn-in trees.
DOI: 10.5061/dryad.j251f/2
title: Williams et al 2015_MantelTest

description: Input data used to perform a Mantel’s test for isolation by distance in SPAGeDi. Shark Reef was combined with Osprey Reef for this analysis. Sampling location data is approximate.
DOI: 10.5061/dryad.q06c4/10
title: Table 1

description: Abundance of bumblebee species (Bombus s.str) in assemblages sampled throughout Europe. Species were separated according to the RFLP-based method of Murray et al. (2008).
DOI: 10.5061/dryad.q06c4/11
title: Code used for Bayesian analysis

description: Code used for Bayesian analysis
DOI: 10.5061/dryad.q06c4/12
title: Code used for maximum likelihood analysis

description: Code used for maximum likelihood analysis
DOI: 10.5061/dryad.q06c4/13
title: COI aligned sequences for all individuals

description: COI aligned sequences for all individuals
DOI: 10.5061/dryad.q06c4/14
title: Table 2 - GPS locations of all sampled populations

description: GPS locations of all sampled populations
DOI: 10.5061/dryad.q06c4/7
title: Figure S1

description: Figure S1 – Fifty-percent rule consensus tree showing relationships among Bombus terrestris based on maximum likelihood analysis and Bayesian inference analysis of a 633bp segment of the mitochondrial COI gene. The tree was rooted with Bombus ignitus and Apis mellifera. Numbers above the branch are clade credibility for maximum likelihood and for Bayesian analysis below the branch.
DOI: 10.5061/dryad.q06c4/8
title: Figure S2

description: Figure S2– A) Estimated likelihood of the posterior probability, LnP(X|K), for values of K (the number of genetic clusters) ranging from 1 to 12 as calculated  using STRUCTURE. The mean LnP(X| K) for each K over 20 permutations is represented by solid squares. Bars correspond to standard deviations over 20 permutations. B) modal value quantity of ∆K  based on the second order rate change is calculated according to Evanno et al (2005).
DOI: 10.5061/dryad.q06c4/9
title: Figure S3

description: Figure S3 – Proportional membership of 24 European Bombus terrestris populations to K=7 genetic clusters. Individuals are represented by a single vertical column divided into 7 (=K) colors. The relative lengths of the colored segments correspond to the individual’s estimated proportion of membership in that cluster.
DOI: 10.5061/dryad.r6m04/26
title: Readme
DOI: 10.5061/dryad.v020j/5
title: Structure input
DOI: 10.5061/dryad.v3n85/1
title: Cat GPS data by cat, season, and day/night

description: Free-ranging cat GPS data for 2010-2011 by cat, season, and day/night
DOI: 10.5061/dryad.4q78p/10
title: Southern_garden_trait-matching_South_DGC

description: Phenotypic data for aspen genotypes comprising the South DGC in the southern garden: latitude of genotype origin, tree height, tree diameter, bud flush date, bud set date, active growth period,  mean individual leaf area,  mean specific leaf area,  mean petiole length, the proportion of leaves bearing extra-floral nectaries (EFNs), foliar total phenolics, foliar condensed tannins, and the paired difference index based on arthropod herbivore counts. Module is the module number to which each genotype was assigned.
DOI: 10.5061/dryad.4q78p/5
title: Northern_garden_trait-matching_all_genotypes

description: Phenotypic data for all genotypes in the northern garden: latitude of genotype origin, tree height, tree diameter, bud flush date, bud set date, active growth period,  mean individual leaf area,  mean specific leaf area,  mean petiole length, the proportion of leaves bearing extra-floral nectaries (EFNs), foliar total phenolics, foliar condensed tannins, and the paired difference index based on arthropod herbivore counts. Module is the module number to which each genotype was assigned.
DOI: 10.5061/dryad.4q78p/6
title: Northern_garden_trait-matching_South_DGC

description: Phenotypic data for aspen genotypes comprising the South DGC in the northern garden: latitude of genotype origin, tree height, tree diameter, bud flush date, bud set date, active growth period,  mean individual leaf area,  mean specific leaf area,  mean petiole length, the proportion of leaves bearing extra-floral nectaries (EFNs), foliar total phenolics, foliar condensed tannins, and the paired difference index based on arthropod herbivore counts. Module is the module number to which each genotype was assigned.
DOI: 10.5061/dryad.4q78p/7
title: Northern_garden_trait-matching_North_DGC

description: Phenotypic data for aspen genotypes comprising the North DGC in the northern garden: latitude of genotype origin, tree height, tree diameter, bud flush date, bud set date, active growth period,  mean individual leaf area,  mean specific leaf area,  mean petiole length, the proportion of leaves bearing extra-floral nectaries (EFNs), foliar total phenolics, foliar condensed tannins, and the paired difference index based on arthropod herbivore counts. Module is the module number to which each genotype was assigned.
DOI: 10.5061/dryad.4q78p/8
title: Southern_garden_trait-matching_all_genotypes

description: Phenotypic data for all genotypes in the southern garden: latitude of genotype origin, tree height, tree diameter, bud flush date, bud set date, active growth period,  mean individual leaf area,  mean specific leaf area,  mean petiole length, the proportion of leaves bearing extra-floral nectaries (EFNs), foliar total phenolics, foliar condensed tannins, and the paired difference index based on arthropod herbivore counts. Module is the module number to which each genotype was assigned.
DOI: 10.5061/dryad.4q78p/9
title: Southern_garden_trait-matching_North_DGC

description: Phenotypic data for aspen genotypes comprising the North DGC in the southern garden: latitude of genotype origin, tree height, tree diameter, bud flush date, bud set date, active growth period,  mean individual leaf area,  mean specific leaf area,  mean petiole length, the proportion of leaves bearing extra-floral nectaries (EFNs), foliar total phenolics, foliar condensed tannins, and the paired difference index based on arthropod herbivore counts. Module is the module number to which each genotype was assigned.
DOI: 10.5061/dryad.566h9/1
title: emergence date S pop

description: emergence date S pop
DOI: 10.5061/dryad.566h9/2
title: emergence date B pop

description: emergence date B pop
DOI: 10.5061/dryad.566h9/3
title: heading date S 2012

description: heading date S 2012
DOI: 10.5061/dryad.566h9/4
title: heading date S 2013

description: heading date S 2013
DOI: 10.5061/dryad.64687/16
title: BD2_Read2.fastq

description: Raw sequences, Bat diet study, Pool 2, Read 2
DOI: 10.5061/dryad.64687/17
title: BD3_Read1.fastq

description: Raw sequences, Bat diet study, Pool 3, Read 1
DOI: 10.5061/dryad.64687/18
title: BD3_Read2.fastq

description: Raw sequences, Bat diet study, Pool 3, Read 2
DOI: 10.5061/dryad.64687/19
title: BD4_Read1.fastq

description: Raw sequences, Bat diet study, Pool 4, Read 1
DOI: 10.5061/dryad.64687/20
title: BD4_Read2.fastq

description: Raw sequences, Bat diet study, Pool 4, Read 2
DOI: 10.5061/dryad.64687/21
title: BD5_Read1.fastq

description: Raw sequences, Bat diet study, Pool 5, Read 1
DOI: 10.5061/dryad.64687/22
title: BD5_Read2.fastq

description: Raw sequences, Bat diet study, Pool 5, Read 2
DOI: 10.5061/dryad.64687/23
title: Tags_in_libraries

description: Sheet 1: List of tags used in libraries (LD1-LD6 and BD1-BD5); Sheet 2: List of tag-sequences in the leech diet study; Sheet 3: List of tag-sequences in the bat diet study.
DOI: 10.5061/dryad.70m5h/1
title: The data underlying the findings of the study

description: Supplementary data 1: Patient demographic and clinical characteristics. Supplementary data 2: The list of proteins found to be expressed at different levels between laryngeal carcinoma samples and paired non-cancerous samples by iTRAQ analysisa. a118:117 and 121:119 refer to relative level of protein expression in laryngeal carcinoma samples with respect to non-cancerous samples. Statistical calculation for iTRAQ-based detection and relative quantification were calculated using the Paragon Algorithm in the ProteinPilot software. Supplementary data 3: The biological processes of differentially expressed proteins. Supplementary data 4: The protein classes of differentially expressed proteins. Supplementary data 5: The molecular functions of differentially expressed proteins. a118:117 and 121:119 refer to relative level of protein expression in laryngeal carcinoma samples with respect to non-cancerous samples. Statistical calculation for iTRAQ-based detection and relative quantification were calculated using the Paragon Algorithm in the ProteinPilot software. Supplementary data 3: The biological processes of differentially expressed proteins. Supplementary data 4: The protein classes of differentially expressed proteins. Supplementary data 5: The molecular functions of differentially expressed proteins.
DOI: 10.5061/dryad.728b4.2/10.2
title: m5_population_15

description: SNP matrix - m5, 15 populations
DOI: 10.5061/dryad.728b4.2/11.2
title: m5_population_20

description: SNP matrix - m5, 20 populations
DOI: 10.5061/dryad.728b4.2/12.2
title: m5_population_25

description: SNP matrix - m5, 25 populations
DOI: 10.5061/dryad.728b4.2/7.2
title: m8_population_15

description: SNP matrix - m8, 15 populations
DOI: 10.5061/dryad.728b4.2/8.2
title: m8_population_20

description: SNP matrix - m8, 20 populations
DOI: 10.5061/dryad.728b4.2/9.2
title: m8_population_25

description: SNP matrix - m8, 25 populations
DOI: 10.5061/dryad.88fm6/1
title: Sidorov_dataset_alignment

description: Alignment dataset of partial mitochondrial DNA of 10 Zenkevitchia specimens in NEXUS format by SeaView 4.0.
DOI: 10.5061/dryad.cs4h8/1
title: Fig. S2 Neighbor-joining phylogenetic tree based on the nucleotide sequence of SSU rRNA gene showing the evolutionary relationships of the novel bacterial isolates

description: The aligned sequences in FASTA file format (.fas)
DOI: 10.5061/dryad.cs4h8/2
title: Fig. S2 Neighbor-joining phylogenetic tree based on the nucleotide sequence of SSU rRNA gene showing the evolutionary relationships of the novel bacterial isolates -Tree file

description: Phylogenetic tree file in NEWICK format (.nwk)
DOI: 10.5061/dryad.j13m3/2
title: MrBayes_input

description: A nexus file containing sequence alignments and MrBayes commands. Taxa names correspond to the abbreviations listed in Table2.
DOI: 10.5061/dryad.j13m3/3
title: PATHd8_input

description: Input file for the program PATHd8. Contains details of the fossil calibration.
DOI: 10.5061/dryad.j13m3/4
title: Table S2

description: Tab delineated file contains insect family names, species names, presence and type of conjugation, sample sizes, trait means and standard errors. Missing data is coded with na. For a few species, only minimum sperm length were available (determined from sperm bundles or potentially broken sperm) and is indicated with *.
DOI: 10.5061/dryad.j13m3/5
title: TableS1

description: Tab delineated file contains raw data (testis, paragonial and body mass) used to calculate inter- and intraspecific allometric relationships.
DOI: 10.5061/dryad.j13m3/6
title: Table S3

description: Tab delineated file contains species names and accession numbers for mitochondrial DNA sequences. Also includes abbreviated names used in Nexus file.
DOI: 10.5061/dryad.j13m3/7
title: Ultrametric_tree

description: A nexus file containing a fossil calibrated tree (see article for details) with polytomies randomly resolved in Mesquite.
DOI: 10.5061/dryad.j13m3/8
title: Read Me

description: Contains descriptions of other files in this data set.
DOI: 10.5061/dryad.n4g95/1
title: Australian sea lion MHC DQB and DRB genotypes

description: Information includes list of all individual pups that were genotyped, sample location (Seal Bay or Dangerous Reef), and DQB and DRB alleles identified in each individual.
DOI: 10.5061/dryad.q06c4/15
title: Table 3 - Full genotyped dataset of all populations of Bombus terrestris.

description: Full genotyped dataset of all populations of Bombus terrestris.
DOI: 10.5061/dryad.q06c4/16
title: Abundance of bumblebee species (Bombus s.str) in assemblages sampled throughout Europe.

description: Abundance of bumblebee species (Bombus s.str) in assemblages sampled throughout Europe. Species were separated according to the RFLP-based method of Murray et al. (2008).
DOI: 10.5061/dryad.q06c4/17
title: COI aligned sequences for all individuals_PAUP

description: COI aligned sequences for all individuals. PAUP input file.
DOI: 10.5061/dryad.q06c4/18
title: COI aligned sequences for all individuals_MrBayes

description: COI aligned sequences for all individuals. MrBayes input file.
DOI: 10.5061/dryad.q06c4/19
title: MrBayes Tree File

description: MrBayes output file.
DOI: 10.5061/dryad.q06c4/20
title: Paup Tree File

description: Paup output file.
DOI: 10.5061/dryad.r9k57.2
title: Data from: Weighted quartets phylogenetics
DOI: 10.5061/dryad.r9k57.2/1.2
title: maxCutPack

description: The Weighted Quartet Max Cut package.