cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13978880.v1
title: Additional file 4 of 5-AZA-dC induces epigenetic changes associated with modified glycosylation of secreted glycoproteins and increased EMT and migration in chemo-sensitive cancer cells

description: Additional file 4: Table S3. P-values for siRNA knock down experiments (Fig. 6)
DOI: 10.6084/m9.figshare.13978880
title: Additional file 4 of 5-AZA-dC induces epigenetic changes associated with modified glycosylation of secreted glycoproteins and increased EMT and migration in chemo-sensitive cancer cells

description: Additional file 4: Table S3. P-values for siRNA knock down experiments (Fig. 6)
DOI: 10.6084/m9.figshare.13978909
title: Additional file 2 of Food safety knowledge, attitudes and practices of food handlers: A cross-sectional study in school kitchens in Espírito Santo, Brazil

description: Additional file 2. Board 1 Knowledge of food safety by food handlers from 52 schools in in Vitória, Espírito Santo, Brazil. Board 2 Evaluation of food safety attitudes by food handlers from 52 schools in Vitória, Espírito Santo, Brazil. Board 3 Evaluation of food safety practices by food handlers from 52 schools in Vitória, Espírito Santo, Brazil.
DOI: 10.6084/m9.figshare.13978907.v1
title: Additional file 2 of Nanopore sequencing from liquid biopsy: analysis of copy number variations from cell-free DNA of lung cancer patients

description: Additional file 2: Supplementary tables. Spreadsheet file including analyzed data and statistics. Table S1. Case series and run statistics. Table S2. Performance of NanoGLADIATOR pipeline in “nocontrol” and “paired” mode. Table S3. Correlation of Illumina and Nanopore results. Table S4. Sensitivity, Specificity, Accuracy and Precision test of Nanopore approach. Table S5. Correlation of Nanopore results: subsampled BAMs (2 M reads) Vs full BAMs (“nocontrol” and “paired” mode). Table S6. Correlation of Illumina results: paired-end Vs single-end, and subsampled BAMs (2 M reads) Vs full BAMs. Table S7. Genes and genomic regions CNV results. Table S8. CNV detection performance at different tumor fractions.
DOI: 10.6084/m9.figshare.13978907
title: Additional file 2 of Nanopore sequencing from liquid biopsy: analysis of copy number variations from cell-free DNA of lung cancer patients

description: Additional file 2: Supplementary tables. Spreadsheet file including analyzed data and statistics. Table S1. Case series and run statistics. Table S2. Performance of NanoGLADIATOR pipeline in “nocontrol” and “paired” mode. Table S3. Correlation of Illumina and Nanopore results. Table S4. Sensitivity, Specificity, Accuracy and Precision test of Nanopore approach. Table S5. Correlation of Nanopore results: subsampled BAMs (2 M reads) Vs full BAMs (“nocontrol” and “paired” mode). Table S6. Correlation of Illumina results: paired-end Vs single-end, and subsampled BAMs (2 M reads) Vs full BAMs. Table S7. Genes and genomic regions CNV results. Table S8. CNV detection performance at different tumor fractions.
DOI: 10.6084/m9.figshare.13978909.v1
title: Additional file 2 of Food safety knowledge, attitudes and practices of food handlers: A cross-sectional study in school kitchens in Espírito Santo, Brazil

description: Additional file 2. Board 1 Knowledge of food safety by food handlers from 52 schools in in Vitória, Espírito Santo, Brazil. Board 2 Evaluation of food safety attitudes by food handlers from 52 schools in Vitória, Espírito Santo, Brazil. Board 3 Evaluation of food safety practices by food handlers from 52 schools in Vitória, Espírito Santo, Brazil.
DOI: 10.6084/m9.figshare.13978921
title: Additional file 2 of Considerations when offering mental health first aid to a person with an intellectual disability: a Delphi study

description: Additional file 2. Endorsed and Rejected items.
DOI: 10.6084/m9.figshare.13978921.v1
title: Additional file 2 of Considerations when offering mental health first aid to a person with an intellectual disability: a Delphi study

description: Additional file 2. Endorsed and Rejected items.
DOI: 10.6084/m9.figshare.13978951
title: Additional file 4 of Offering mental health first aid to a person experiencing psychosis: a Delphi study to redevelop the guidelines published in 2008

description: Additional file 4. Endorsed and rejected statements.
DOI: 10.6084/m9.figshare.13978951.v1
title: Additional file 4 of Offering mental health first aid to a person experiencing psychosis: a Delphi study to redevelop the guidelines published in 2008

description: Additional file 4. Endorsed and rejected statements.
DOI: 10.6084/m9.figshare.13979071
title: Additional file 2 of Association of UCP1 and UCP2 variants with diabetic retinopathy susceptibility in type-2 diabetes mellitus patients: a meta-analysis

description: Additional file 2.
DOI: 10.6084/m9.figshare.13979068.v1
title: Additional file 1 of Association of UCP1 and UCP2 variants with diabetic retinopathy susceptibility in type-2 diabetes mellitus patients: a meta-analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.13979068
title: Additional file 1 of Association of UCP1 and UCP2 variants with diabetic retinopathy susceptibility in type-2 diabetes mellitus patients: a meta-analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.13979071.v1
title: Additional file 2 of Association of UCP1 and UCP2 variants with diabetic retinopathy susceptibility in type-2 diabetes mellitus patients: a meta-analysis

description: Additional file 2.
DOI: 10.6084/m9.figshare.13979074
title: Additional file 3 of Association of UCP1 and UCP2 variants with diabetic retinopathy susceptibility in type-2 diabetes mellitus patients: a meta-analysis

description: Additional file 3.
DOI: 10.6084/m9.figshare.13979074.v1
title: Additional file 3 of Association of UCP1 and UCP2 variants with diabetic retinopathy susceptibility in type-2 diabetes mellitus patients: a meta-analysis

description: Additional file 3.
DOI: 10.6084/m9.figshare.13979069
title: Additional file 1 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 1. Input data for Case study-1.
DOI: 10.6084/m9.figshare.13979072
title: Additional file 2 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 2. Input data for Case study-2.
DOI: 10.6084/m9.figshare.13979078
title: Additional file 3 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 3. Input data for Case study-3.
DOI: 10.6084/m9.figshare.13979072.v1
title: Additional file 2 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 2. Input data for Case study-2.
DOI: 10.6084/m9.figshare.13979081.v1
title: Additional file 4 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 4. Input data for Case study-4.
DOI: 10.6084/m9.figshare.13979084.v1
title: Additional file 5 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 5. Input data for Case study-5.
DOI: 10.6084/m9.figshare.13979069.v1
title: Additional file 1 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 1. Input data for Case study-1.
DOI: 10.6084/m9.figshare.13979087
title: Additional file 6 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 6. KwLPR.RMD script.
DOI: 10.6084/m9.figshare.13979081
title: Additional file 4 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 4. Input data for Case study-4.
DOI: 10.6084/m9.figshare.13979078.v1
title: Additional file 3 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 3. Input data for Case study-3.
DOI: 10.6084/m9.figshare.13979090
title: Additional file 7 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 7. Overview of KwLPR modelling results.
DOI: 10.6084/m9.figshare.13979087.v1
title: Additional file 6 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 6. KwLPR.RMD script.
DOI: 10.6084/m9.figshare.13979090.v1
title: Additional file 7 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 7. Overview of KwLPR modelling results.
DOI: 10.6084/m9.figshare.13979084
title: Additional file 5 of The kernel-weighted local polynomial regression (KwLPR) approach: an efficient, novel tool for development of QSAR/QSAAR toxicity extrapolation models

description: Additional file 5. Input data for Case study-5.
DOI: 10.6084/m9.figshare.13979152
title: Additional file 3 of Prevalence of abnormal umbilical arterial flow on Doppler ultrasound in low-risk and unselected pregnant women: a systematic review

description: Additional file 3: Appendix S3. Included studies.
DOI: 10.6084/m9.figshare.13979152.v1
title: Additional file 3 of Prevalence of abnormal umbilical arterial flow on Doppler ultrasound in low-risk and unselected pregnant women: a systematic review

description: Additional file 3: Appendix S3. Included studies.
DOI: 10.6084/m9.figshare.13979173
title: Additional file 2 of Rapid review of COVID-19 epidemic estimation studies for Iran

description: Additional file 2. Target studies’ abstracted data.
DOI: 10.6084/m9.figshare.13979173.v1
title: Additional file 2 of Rapid review of COVID-19 epidemic estimation studies for Iran

description: Additional file 2. Target studies’ abstracted data.
DOI: 10.6084/m9.figshare.13979176.v1
title: Additional file 1 of Preoperative nutritional risk index and postoperative one-year skeletal muscle loss can predict the prognosis of patients with gastric adenocarcinoma: a registry-based study

description: Additional file 1 Supplementary Figure S1. Web-based toolkit for automatic segmentation of body composition. Supplementary Figure S2. Representative cases.
DOI: 10.6084/m9.figshare.13979176
title: Additional file 1 of Preoperative nutritional risk index and postoperative one-year skeletal muscle loss can predict the prognosis of patients with gastric adenocarcinoma: a registry-based study

description: Additional file 1 Supplementary Figure S1. Web-based toolkit for automatic segmentation of body composition. Supplementary Figure S2. Representative cases.
DOI: 10.6084/m9.figshare.13979237
title: Additional file 18 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 18: Table S1. List of up- and downregulated genes after 200 MPa treatment in RO15.
DOI: 10.6084/m9.figshare.13979243
title: Additional file 19 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 19: Table S2. List of up- and downregulated genes after 400 MPa treatment in RO15.
DOI: 10.6084/m9.figshare.13979243.v1
title: Additional file 19 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 19: Table S2. List of up- and downregulated genes after 400 MPa treatment in RO15.
DOI: 10.6084/m9.figshare.13979258.v1
title: Additional file 22 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 22: Table S5. List of enriched GO terms for both up- and downregulated genes after 200 MPa and 400 MPa HPP.
DOI: 10.6084/m9.figshare.13979249
title: Additional file 20 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 20: Table S3. List of up- and downregulated genes after 200 MPa treatment in ScottA.
DOI: 10.6084/m9.figshare.13979252
title: Additional file 21 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 21: Table S4. List of up- and downregulated genes after 400 MPa treatment in ScottA.
DOI: 10.6084/m9.figshare.13979237.v1
title: Additional file 18 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 18: Table S1. List of up- and downregulated genes after 200 MPa treatment in RO15.
DOI: 10.6084/m9.figshare.13979252.v1
title: Additional file 21 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 21: Table S4. List of up- and downregulated genes after 400 MPa treatment in ScottA.
DOI: 10.6084/m9.figshare.13979258
title: Additional file 22 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 22: Table S5. List of enriched GO terms for both up- and downregulated genes after 200 MPa and 400 MPa HPP.
DOI: 10.6084/m9.figshare.13979273
title: Additional file 26 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 26: Table S9. Annotation of ncRNA genes in RO15 and RNA-seq read counts for them in ScottA.
DOI: 10.6084/m9.figshare.13979261
title: Additional file 23 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 23: Table S6. 200 MPa and 400 MPa specific upregulated genes in RO15. The table is divided into five main columns. First column shows genes upregulated both at 200 MPa and 400 MPa. Second column shows genes upregulated at 200 MPa but not at 400 MPa. Third column shows genes upregulated at 400 MPa but not at 200 MPa. Fourth column shows GO terms enriched for second column genes. Fifth column shows GO terms enriched for third column genes. Time points were divided with sheets.
DOI: 10.6084/m9.figshare.13979249.v1
title: Additional file 20 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 20: Table S3. List of up- and downregulated genes after 200 MPa treatment in ScottA.
DOI: 10.6084/m9.figshare.13979261.v1
title: Additional file 23 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 23: Table S6. 200 MPa and 400 MPa specific upregulated genes in RO15. The table is divided into five main columns. First column shows genes upregulated both at 200 MPa and 400 MPa. Second column shows genes upregulated at 200 MPa but not at 400 MPa. Third column shows genes upregulated at 400 MPa but not at 200 MPa. Fourth column shows GO terms enriched for second column genes. Fifth column shows GO terms enriched for third column genes. Time points were divided with sheets.
DOI: 10.6084/m9.figshare.13979273.v1
title: Additional file 26 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 26: Table S9. Annotation of ncRNA genes in RO15 and RNA-seq read counts for them in ScottA.
DOI: 10.6084/m9.figshare.13979264
title: Additional file 24 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 24: Table S7. 200 MPa and 400 MPa specific upregulated genes in ScottA. The table is divided into five main columns. First column shows genes upregulated both at 200 MPa and 400 MPa. Second column shows genes upregulated at 200 MPa but not at 400 MPa. Third column shows genes upregulated at 400 MPa but not at 200 MPa. Fourth column shows GO terms enriched for second column genes. Fifth column shows GO terms enriched for third column genes. Time points were divided with sheets.
DOI: 10.6084/m9.figshare.13979264.v1
title: Additional file 24 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 24: Table S7. 200 MPa and 400 MPa specific upregulated genes in ScottA. The table is divided into five main columns. First column shows genes upregulated both at 200 MPa and 400 MPa. Second column shows genes upregulated at 200 MPa but not at 400 MPa. Third column shows genes upregulated at 400 MPa but not at 200 MPa. Fourth column shows GO terms enriched for second column genes. Fifth column shows GO terms enriched for third column genes. Time points were divided with sheets.
DOI: 10.6084/m9.figshare.13979282.v1
title: Additional file 29 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 29: Table S12. List of clustered genes and cluster links in ScottA.
DOI: 10.6084/m9.figshare.13979267
title: Additional file 25 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 25: Table S8. Annotation of ncRNA genes in RO15 and RNA-seq read counts for them in RO15.
DOI: 10.6084/m9.figshare.13979276
title: Additional file 27 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 27: Table S10. Table shows gene network link and score of the aggregated network. Undirected links between genes were shown in this table, the third column represents the score of the aggregated network calculated using Seidr. Sheet 1: RO15, Sheet 2: ScottA.
DOI: 10.6084/m9.figshare.13979279
title: Additional file 28 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 28: Table S11. List of clustered genes and cluster links in RO15.
DOI: 10.6084/m9.figshare.13979276.v1
title: Additional file 27 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 27: Table S10. Table shows gene network link and score of the aggregated network. Undirected links between genes were shown in this table, the third column represents the score of the aggregated network calculated using Seidr. Sheet 1: RO15, Sheet 2: ScottA.
DOI: 10.6084/m9.figshare.13979291
title: Additional file 30 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 30: Table S13. Significant de novo predicted binding motif from upstream regions of clustered genes in RO15. Predicted motifs and upstream region sites were listed. If a database match was seen for the predicted motif, tomtom database results were also listed after the motifs.
DOI: 10.6084/m9.figshare.13979267.v1
title: Additional file 25 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 25: Table S8. Annotation of ncRNA genes in RO15 and RNA-seq read counts for them in RO15.
DOI: 10.6084/m9.figshare.13979294
title: Additional file 31 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 31: Table S14. Significant de novo predicted binding motif from upstream regions of clustered genes in ScottA. Predicted motifs and upstream region sites were listed. If a database match was seen for the predicted motif, tomtom database results were also listed after the motifs.
DOI: 10.6084/m9.figshare.13979279.v1
title: Additional file 28 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 28: Table S11. List of clustered genes and cluster links in RO15.
DOI: 10.6084/m9.figshare.13979282
title: Additional file 29 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 29: Table S12. List of clustered genes and cluster links in ScottA.
DOI: 10.6084/m9.figshare.13979300
title: Additional file 33 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 33: Table S16. Sample IDs used for RNA-seq. Table shows sample IDs and related experimental conditions for both RO15 and ScottA.
DOI: 10.6084/m9.figshare.13979300.v1
title: Additional file 33 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 33: Table S16. Sample IDs used for RNA-seq. Table shows sample IDs and related experimental conditions for both RO15 and ScottA.
DOI: 10.6084/m9.figshare.13979303
title: Additional file 34 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 34: Table S17. Raw CDS counts. Table shows raw RNA-seq read counts in CDS in both RO15 and ScottA.
DOI: 10.6084/m9.figshare.13979291.v1
title: Additional file 30 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 30: Table S13. Significant de novo predicted binding motif from upstream regions of clustered genes in RO15. Predicted motifs and upstream region sites were listed. If a database match was seen for the predicted motif, tomtom database results were also listed after the motifs.
DOI: 10.6084/m9.figshare.13979294.v1
title: Additional file 31 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 31: Table S14. Significant de novo predicted binding motif from upstream regions of clustered genes in ScottA. Predicted motifs and upstream region sites were listed. If a database match was seen for the predicted motif, tomtom database results were also listed after the motifs.
DOI: 10.6084/m9.figshare.13979303.v1
title: Additional file 34 of High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

description: Additional file 34: Table S17. Raw CDS counts. Table shows raw RNA-seq read counts in CDS in both RO15 and ScottA.
DOI: 10.6084/m9.figshare.13979402.v1
title: Additional file 2 of Long‐term monitoring of common spadefoot toad activity in a European steppe using barn owl pellets

description: Additional file 2: Data and R scripts. The original data used and the R script to reproduce our analysis.
DOI: 10.6084/m9.figshare.13979402
title: Additional file 2 of Long‐term monitoring of common spadefoot toad activity in a European steppe using barn owl pellets

description: Additional file 2: Data and R scripts. The original data used and the R script to reproduce our analysis.
DOI: 10.6084/m9.figshare.13978382
title: Example-2021-02-13

description: This is an example.
DOI: 10.6084/m9.figshare.13828514
title: Online Supplement-Code and Data for NP-ODE: Neural Process Aided Ordinary Differential Equations for Uncertainty Quantification of Finite Element Analysis

description: This supplementary file includes data, code, and appendices for the paper "NP-ODE: Neural Process Aided Ordinary Differential Equations for Uncertainty Quantification of Finite Element Analysis", published in IISE Transactions.