cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.k8nvp8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteronucia perlata (Sakai, 1963)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-14 42, 9 38, -7 26, -14 42))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011929-230828120925497/datasets/export for details.
DOI: 10.15468/dl.ck6auh
title: Occurrence Download

description: A dataset containing 359 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rosa virginiana Mill."
 ]
}

 The dataset includes 359 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004314-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8fnqp8
title: Occurrence Download

description: A dataset containing 758764 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen)",
 "Continent is Europe",
 "TaxonKey is Calluna vulgaris (L.) Hull",
 "Year 1990-2024"
 ]
}

 The dataset includes 758764 records from 1561 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205717-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tsf6bz
title: Occurrence Download

description: A dataset containing 1944 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Imperata brasiliensis Trin.)"
 ]
}

 The dataset includes 1944 records from 204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010872-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.abtamg
title: Occurrence Download

description: A dataset containing 450 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Imperata conferta (J.Presl) Ohwi)"
 ]
}

 The dataset includes 450 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010873-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqts4t
title: Occurrence Download

description: A dataset containing 887 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "OccurrenceStatus is Present",
 "TaxonKey is Ursus arctos Linnaeus, 1758",
 "Year 2005-2014"
 ]
}

 The dataset includes 887 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010874-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25792035
title: TriZOD Dataset 2024-05-09

description: AbstractAccurate quantification of intrinsic disorder, crucial for understanding functional protein dynamics, remains challenging. We introduce TriZOD, an innovative scoring system for protein disorder analysis, utilizing nuclear magnetic resonance (NMR) spectroscopy chemical shifts. Traditional methods provide binary, residue-specific annotations, missing the complex spectrum of protein disorder. TriZOD extends the CheZOD scoring framework with quantitative statistical descriptors, offering a nuanced analysis of intrinsically disordered regions. It calculates per-residue scores from chemical shift data of polypeptides in the Biological Magnetic Resonance Data Bank (BMRB). The CheZOD Z-score is a quantitative metric for how much a set of experimentally determined chemical shifts deviate from random coil chemical shifts. The TriZOD G-scores extend upon them to be independent of the number of available chemical shifts. They are normalized to range between 0 and 1, which is beneficial for interpretation and use in training disorder predictors. Additionally, TriZOD introduces a refined, automated selection of BMRB datasets, including filters for physicochemical properties, keywords, and chemical denaturants. We calculated G-scores for over 15,000 peptides in the BMRB, approximately 10-fold the size of previously published CheZOD datasets.Validation against DisProt annotations demonstrates substantial agreement yet highlights discrepancies, suggesting the need to reevaluate some disorder annotations. TriZOD advances protein disorder prediction by leveraging the full potential of the BMRB database, refining our understanding of disorder, and challenging existing annotations.Dataset DescriptionThis publication consists of four nested datasets of increasing filter stringency: Unfiltered, tolerant, moderate and strict. An overview of the applied filters is given on the project GitHub repository: https://github.com/MarkusHaak/trizod. The .json files contain all entries of the BMRB that are in accordance with the given filter levels. These are not redundancy reduced and also contain the test set entries and are therefore not intended for direct use as training sets in machine learning applications. Instead, for this purpose, please use only those entries with IDs found in the [filter_level]_rest_set.fasta files and extract the corresponding information such as TriZOD G-scores and/or physicochemical properties from the respective .json files. These fasta files contain the cluster representatives of the redundancy reduction procedure which was performed in an iterative fashion such that clusters with members found in all filter levels are shared among them and have the same cluster representatives. If necessary, all other cluster members can be retrieved from the given [filter_level]_rest_clu.tsv files. The file TriZOD_test_set.fasta contains the IDs and sequences of the TriZOD test set. It is intended that the corresponding data is taken from the strict dataset.
DOI: 10.15468/dl.bbh7j5
title: Occurrence Download

description: A dataset containing 33925 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Imperatoria ostruthium L.)"
 ]
}

 The dataset includes 33925 records from 374 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010875-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bk3jt6
title: Occurrence Download

description: A dataset containing 3462 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "OccurrenceStatus is Present",
 "TaxonKey is Ursus arctos Linnaeus, 1758",
 "Year 2015-2024"
 ]
}

 The dataset includes 3462 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010876-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7akgbb
title: Occurrence Download

description: A dataset containing 318043 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bufo bufo (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 318043 records from 1652 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010868-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/h5m8-yvhw
title: Measurement of Sulphate_corrected at Topolniky

description: Measurement of Sulphate_corrected at Topolniky
DOI: 10.48597/hpam-tcpu
title: Measurement of Sulphate_corrected at Montelibretti

description: Measurement of Sulphate_corrected at Montelibretti
DOI: 10.48597/hqs6-ejg3
title: Measurement of Precipitation_amount at Yarner Wood

description: Measurement of Precipitation_amount at Yarner Wood
DOI: 10.48597/hyfx-cm9r
title: Measurement of Sulphate_corrected at Víznar

description: Measurement of Sulphate_corrected at Víznar
DOI: 10.48597/j2hn-az22
title: Measurement of Inorganics in precipitation at Ispra

description: Measurement of Inorganics in precipitation at Ispra
DOI: 10.48597/j3x2-c548
title: Measurement of Inorganics in precipitation at Janiskoski

description: Measurement of Inorganics in precipitation at Janiskoski
DOI: 10.48597/jcht-p4hn
title: Measurement of Sulphur_dioxide at Kollumerwaard

description: Measurement of Sulphur_dioxide at Kollumerwaard
DOI: 10.48597/jww8-rha2
title: Measurement of Precipitation_amount at O Saviñao

description: Measurement of Precipitation_amount at O Saviñao
DOI: 10.48597/k6ds-8zqb
title: Measurement of Inorganics in precipitation at Ispra

description: Measurement of Inorganics in precipitation at Ispra
DOI: 10.48597/kfyy-53ja
title: Measurement of Sulphate_corrected at Danki

description: Measurement of Sulphate_corrected at Danki
DOI: 10.48597/kr9c-69d3
title: Measurement of Precipitation_amount at Birkenes II

description: Measurement of Precipitation_amount at Birkenes II
DOI: 10.48597/kxrx-at6e
title: Measurement of Precipitation_amount at San Pablo de los Montes

description: Measurement of Precipitation_amount at San Pablo de los Montes
DOI: 10.48597/marq-heqf
title: Measurement of Inorganics in air and particle phase at Montelibretti

description: Measurement of Inorganics in air and particle phase at Montelibretti
DOI: 10.48597/mpp4-aygw
title: Measurement of Sulphate_corrected at Storhofdi

description: Measurement of Sulphate_corrected at Storhofdi
DOI: 10.48597/mv2y-e3xb
title: Measurement of Precipitation_amount at Doñana

description: Measurement of Precipitation_amount at Doñana
DOI: 10.48597/n4fu-ngaw
title: Measurement of Precipitation_amount at San Pablo de los Montes

description: Measurement of Precipitation_amount at San Pablo de los Montes
DOI: 10.48597/ny4t-z83e
title: Measurement of Heavy metals at Stará Lesná

description: Measurement of Heavy metals at Stará Lesná
DOI: 10.48597/nz6r-4n3r
title: Measurement of Sulphate_corrected at Ähtäri II

description: Measurement of Sulphate_corrected at Ähtäri II
DOI: 10.48597/p2ym-rpdc
title: Measurement of Sulphate_corrected at San Pablo de los Montes

description: Measurement of Sulphate_corrected at San Pablo de los Montes
DOI: 10.48597/pbc3-y7cq
title: Measurement of Sulphate_corrected at Ispra

description: Measurement of Sulphate_corrected at Ispra
DOI: 10.48597/pkkp-pqua
title: Measurement of Heavy metals at Stará Lesná

description: Measurement of Heavy metals at Stará Lesná
DOI: 10.48597/ppnw-cnkj
title: Measurement of Sulphate_corrected at Stará Lesná

description: Measurement of Sulphate_corrected at Stará Lesná
DOI: 10.48597/ps9r-m4ss
title: Measurement of Precipitation_amount at Vilsandi

description: Measurement of Precipitation_amount at Vilsandi
DOI: 10.48597/qjvb-syhz
title: Measurement of Heavy metals at Chopok

description: Measurement of Heavy metals at Chopok
DOI: 10.48597/r4kc-xhwp
title: Measurement of Precipitation_amount at Campisabalos

description: Measurement of Precipitation_amount at Campisabalos
DOI: 10.48597/r73w-g6wk
title: Measurement of Precipitation_amount at Birkenes

description: Measurement of Precipitation_amount at Birkenes
DOI: 10.48597/r8ta-ecv3
title: Measurement of Precipitation_amount at Auchencorth Moss

description: Measurement of Precipitation_amount at Auchencorth Moss
DOI: 10.48597/rgdv-6m2u
title: Measurement of Heavy metals and inorganics in air and particle phase at Bilthoven

description: Measurement of Heavy metals and inorganics in air and particle phase at Bilthoven
DOI: 10.48597/rja4-m3jx
title: Measurement of Precipitation_amount at Svratouch

description: Measurement of Precipitation_amount at Svratouch
DOI: 10.48597/rukv-8qjy
title: Measurement of Precipitation_amount at Lahemaa

description: Measurement of Precipitation_amount at Lahemaa
DOI: 10.48597/sbje-266u
title: Measurement of Sulphate_corrected at Lesnoy

description: Measurement of Sulphate_corrected at Lesnoy
DOI: 10.48597/sgsg-pw8p
title: Measurement of Inorganics in precipitation at Hurdal

description: Measurement of Inorganics in precipitation at Hurdal
DOI: 10.48597/shkv-4b8e
title: Measurement of Sulphate_corrected at Virolahti II

description: Measurement of Sulphate_corrected at Virolahti II
DOI: 10.48597/sxj5-t3ns
title: Measurement of Nitrogen oxides at Cabauw Wielsekade

description: Measurement of Nitrogen oxides at Cabauw Wielsekade
DOI: 10.48597/syyw-tx7s
title: Measurement of Sulphur_dioxide at De Zilk

description: Measurement of Sulphur_dioxide at De Zilk
DOI: 10.48597/t57f-eqxu
title: Measurement of Nitric_acid at Pallas (Matorova)

description: Measurement of Nitric_acid at Pallas (Matorova)
DOI: 10.48597/tgsk-9mas
title: Measurement of Sulphate_corrected at San Pablo de los Montes

description: Measurement of Sulphate_corrected at San Pablo de los Montes
DOI: 10.48597/tqvz-w5zq
title: Measurement of Heavy metals at Birkenes

description: Measurement of Heavy metals at Birkenes
DOI: 10.48597/twed-9n2x
title: Measurement of Precipitation_amount at Zarra

description: Measurement of Precipitation_amount at Zarra
DOI: 10.6084/m9.figshare.25338172
title: P032a Combined Subject Data

description: Combined data across all experiments, phases, and subjects of the P032a project.
DOI: 10.6084/m9.figshare.25338172.v1
title: P032a Combined Subject Data

description: Combined data across all experiments, phases, and subjects of the P032a project.
DOI: 10.22003/xfel.eu-data-900373-00
title: Jungfrau at SPB  commissioning and calibration
DOI: 10.22003/xfel.eu-data-005689-00
title: HIBEF PA - Generation of extreme pressure states with cylindrical imploding wires
DOI: 10.22003/xfel.eu-data-007076-00
title: Negative Staining Single Particle Imaging
DOI: 10.5281/zenodo.7966818
title: The many faces of early life adversity - Content overlap in validated assessment instruments as well as in fear and reward learning research

description: The assessment of early childhood adversity (ACE) is crucial for understanding the impact of aversive events on child development. However, the heterogeneity of assessment tools poses challenges to precision and similarity of measures, and hence interchangeability. In this study, we conducted two separate item-level content analyses of in total 34 questionnaires on early childhood adversity. These include 13 recently recommended questionnaires based on strong psychometric properties. In addition, as a comparison whether these even make it into use, we identified 24 questionnaires through a systematic literature search in an exemplary translationally relevant research field (threat and reward learning). Only, three questionnaires were overlapping across both content analyses, resulting in 34 questionnaires. We identified substantial heterogeneity in the questionnaires and operationalization of ACEs, with limited overlap in ACE exposure types covered by different questionnaires. Specifically, the item-based content analysis of the recommended questionnaires revealed 50 distinct exposure types and a moderate mean overlap (M = 0.28, range: 0.16 - 0.37). For the questionnaires used in the exemplary research field, we identified 40 distinct exposure types and similar mean overlap (M = 0.29, range: 0.19 - 0.36). Furthermore, we observed considerable differences in structural properties across all included questionnaires such as number of items or response formats hampering comparability. We discuss implications on the comparability of results and the interpretation and integration of the existing literature and provide recommendations for future research. In sum, the substantial heterogeneity in the assessment and operationalization of ACE emphasizes their urgent need for methodological solutions to promote comparability, replicability and foster cumulative knowledge generation on this important topic.
DOI: 10.5281/zenodo.8014553
title: The many faces of early life adversity - Content overlap in validated assessment instruments as well as in fear and reward learning research

description: The assessment of early childhood adversity (ACE) is crucial for understanding the impact of aversive events on child development. However, the heterogeneity of assessment tools poses challenges to precision and similarity of measures, and hence interchangeability. In this study, we conducted two separate item-level content analyses of in total 34 questionnaires on early childhood adversity. These include 13 recently recommended questionnaires based on strong psychometric properties. In addition, as a comparison whether these even make it into use, we identified 24 questionnaires through a systematic literature search in an exemplary translationally relevant research field (threat and reward learning). Only, three questionnaires were overlapping across both content analyses, resulting in 34 questionnaires. We identified substantial heterogeneity in the questionnaires and operationalization of ACEs, with limited overlap in ACE exposure types covered by different questionnaires. Specifically, the item-based content analysis of the recommended questionnaires revealed 50 distinct exposure types and a moderate mean overlap (M = 0.28, range: 0.16 - 0.37). For the questionnaires used in the exemplary research field, we identified 40 distinct exposure types and similar mean overlap (M = 0.29, range: 0.19 - 0.36). Furthermore, we observed considerable differences in structural properties across all included questionnaires such as number of items or response formats hampering comparability. We discuss implications on the comparability of results and the interpretation and integration of the existing literature and provide recommendations for future research. In sum, the substantial heterogeneity in the assessment and operationalization of ACE emphasizes their urgent need for methodological solutions to promote comparability, replicability and foster cumulative knowledge generation on this important topic.
DOI: 10.5281/zenodo.8060348
title: The many faces of early life adversity - Content overlap in validated assessment instruments as well as in fear and reward learning research

description: The assessment of early childhood adversity (ACE) is crucial for understanding the impact of aversive events on child development. However, the heterogeneity of assessment tools poses challenges to precision and similarity of measures, and hence interchangeability. In this study, we conducted two separate item-level content analyses of in total 34 questionnaires on early childhood adversity. These include 13 recently recommended questionnaires based on strong psychometric properties. In addition, as a comparison whether these even make it into use, we identified 24 questionnaires through a systematic literature search in an exemplary translationally relevant research field (threat and reward learning). Only, three questionnaires were overlapping across both content analyses, resulting in 34 questionnaires. We identified substantial heterogeneity in the questionnaires and operationalization of ACEs, with limited overlap in ACE exposure types covered by different questionnaires. Specifically, the item-based content analysis of the recommended questionnaires revealed 50 distinct exposure types and a moderate mean overlap (M = 0.28, range: 0.16 - 0.37). For the questionnaires used in the exemplary research field, we identified 40 distinct exposure types and similar mean overlap (M = 0.29, range: 0.19 - 0.36). Furthermore, we observed considerable differences in structural properties across all included questionnaires such as number of items or response formats hampering comparability. We discuss implications on the comparability of results and the interpretation and integration of the existing literature and provide recommendations for future research. In sum, the substantial heterogeneity in the assessment and operationalization of ACE emphasizes their urgent need for methodological solutions to promote comparability, replicability and foster cumulative knowledge generation on this important topic.
DOI: 10.5281/zenodo.10695485
title: The many faces of early life adversity - Content overlap in validated assessment instruments as well as in fear and reward learning research

description: The precise assessment of childhood adversity is crucial for understanding the impact of aversive events on mental and physical development. However, the plethora of assessment tools currently used in the literature with unknown overlap in childhood adversity types covered hamper comparability and cumulative knowledge generation. In this study, we conducted two separate item-level content analyses of in total 35 questionnaires aiming to assess childhood adversity. These include 13 questionnaires that were recently recommended based on strong psychometric properties as well as additional 25 questionnaires that were identified through a systematic literature search. The latter provides important insights into the actual use of childhood adversity questionnaires in a specific, exemplary research field (i.e., the association between childhood adversity and threat and reward learning). Of note, only 3 of the recommended questionnaires were employed in this research field. Both item-wise content analysis illustrate substantial heterogeneity in the adversity types assessed across these questionnaires and hence highlight limited overlap in content (i.e., adversity types) covered by different questionnaires. Furthermore, we observed considerable differences in structural properties across all included questionnaires such as the number of items, age ranges assessed as well as the specific response formats (e.g., binary vs. continuous assessments, self vs. caregiver). We discuss implications for the interpretation, comparability and integration of the results from the existing literature and derive specific recommendations for future research. In sum, the substantial heterogeneity in the assessment and operationalization of childhood adversity emphasizes the urgent need for theoretical and methodological solutions to promote comparability, replicability of childhood adversity assessment and foster cumulative knowledge generation in research on the association of childhood adversity and physical as well as psychological health.