cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12369197.v1
title: Supplementary Material for: Cine-Computed Tomography for the Evaluation of Prosthetic Heart Valve Function

description: <b><i>Background:</i></b> After aortic valve replacement (AVR), suspected prosthetic valve dysfunction (mechanical or biological) may arise based on echocardiographic transvalvular velocities and gradients, leading to reoperative surgical intervention being considered. Our experience has found that 4-dimensional (space and time) image reconstruction of ECG-gated computed tomography, termed cine-CT, may be helpful in such cases. We review and illustrate our experience. <b><i>Methods:</i></b> Twenty-seven AVR patients operated previously by a single surgeon (who performs &gt;100 AVRs/year) were referred for repeat evaluation of suspected aortic stenosis (AS) based on elevated transvalvular velocities and gradients. The patients were fully evaluated by cine-CT. <b><i>Results:</i></b> In all but 2 cases, the cine-CT strikingly and visually confirmed normal leaflet function and excursion, with no valve thrombosis, restriction by pannus, or obstruction by clot. In only 2 cases did cine-CT reveal decreased mechanical valve leaflet excursion. Repeat surgery was required in only 1 case while all other patients continued clinically without cardiac events. <b><i>Conclusions:</i></b> Echocardiography is an extraordinarily useful tool for the evaluation of prosthetic valve function. Increased pressure recovery beyond the valve and other factors may occasionally lead to exaggerated gradients. Cine-CT is emerging as an extremely valuable tool for further evaluation of suspected prosthetic valve AS. Our experience has been extremely helpful, as is shown in the dramatically reassuring images.
DOI: 10.6084/m9.figshare.12369203.v1
title: A Survey on the Interplay between Software Engineering and Systems Engineering during SoS Architecting - replication package

description: Replication package of the paper <i>A Survey on the Interplay between Software Engineering and Systems Engineering during SoS Architecting. </i>Paper accepted on the <i>Empirical Software Engineering and Measurement</i> Conference (ESEM), 2020.<br><i><br></i>
DOI: 10.5517/ccdc.csd.cc20k4nd
title: CCDC 1863523: Experimental Crystal Structure Determination

description: Related Article: Susan E. Henkelis, Simon M. Vornholt, David B. Cordes, Alexandra M. Z. Slawin, Paul S. Wheatley, Russell E. Morris|2019|CrystEngComm|21|1857|doi:10.1039/C9CE00098D
description: Related Article: Susan Elizabeth Henkelis|2019|Thesis|||
DOI: 10.6084/m9.figshare.12369182.v1
title: Supplementary Material for: Follow-Up Ileocolonoscopy Is Underused in Crohn’s Disease Patients after Ileocecal Resection despite Higher Total and Inpatient Health-Care Costs Compared to Controls

description: <b><i>Background:</i></b> Postoperative recurrence is frequently observed after ileocecal resection in Crohn’s disease (CD) patients. Since 2010, endoscopy within 1 year is considered the gold standard for its diagnosis. However, if and how frequent such endoscopies are performed in clinical practice remains unknown. <b><i>Methods:</i></b> We analyzed 1-year follow-up data on CD patients who underwent ileocecal resection between 2012 and 2014 and compared them with hospitalized, non-resected CD controls. Data were extracted from the Helsana database. Helsana is one of the largest Swiss health insurance companies providing coverage for 1.2 million individuals. <b><i>Results:</i></b> A total of 645 CD patients were identified with ≥1 hospitalization between 2012 and 2014 and a follow-up of 1 year. Of these, 79 (12.2%) underwent ileocecal resection. Although endoscopy rates increased over time and were higher in patients with resection versus controls (<i>p</i> = 0.029), in only 54.4% a 1-year follow-up ileocolonoscopy was performed. Postoperative prophylaxis with anti-tumor necrosis factor or azathioprine was prescribed in 63.3%. Female sex and age &gt;60 years were independent predictors for not receiving prophylaxis (odds ratio [OR] 0.36, <i>p</i> = 0.048, and OR 0.2, <i>p</i> = 0.022). Patients with resection had significantly lower numbers of rehospitalizations (1.2 vs. 1.8, <i>p</i> = 0.021), with resection being an independent negative predictor for number of rehospitalizations in a Poisson regression model (incident risk ratio 0.64, <i>p</i> = 0.029). However, disease-related surgery was more often the cause for rehospitalization after resection versus controls (47.6 vs. 22.1%, <i>p</i> = 0.015). Total and inpatient health-care costs were higher in these patients. <b><i>Conclusion:</i></b> Endoscopies are underused after ileocecal resection. This contrasts current guidelines. Physicians should be aware of this underuse and perform follow-up examinations more often.
DOI: 10.6084/m9.figshare.12369056
title: Supplementary Material for: Subclinical Acute Kidney Injury in COVID-19 Patients: A Retrospective Cohort Study

description: Medicine
DOI: 10.6084/m9.figshare.12368930
title: Biochar

description: We collected 1080 crop yields under biochar addition experiments from 143 published literature, including 648 crop yields under B and 430 crop yields under BF treatments.
DOI: 10.6084/m9.figshare.12369056.v1
title: Supplementary Material for: Subclinical Acute Kidney Injury in COVID-19 Patients: A Retrospective Cohort Study

description: Medicine
DOI: 10.5517/ccdc.csd.cc23y4bk
title: CCDC 1964418: Experimental Crystal Structure Determination

description: Related Article: Antonis M. Messinis, Lars H. Finger, Lianrui Hu, Lutz Ackermann|2020|J.Am.Chem.Soc.|142|13102|doi:10.1021/jacs.0c04837
DOI: 10.25955/5ecf021fa4ec9
title: PhD Appendix Items for 'Creative Activation of the Past: Mechanics' Institutes, GLAM, heritage and creativity in the twenty-first century'

description: These are 9 appendices to the PhD thesis 'Creative Activation of the Past: Mechanics' Institutes, GLAM, heritage and creativity in the twenty-first century'<br><br>They include ethics documents, event reports, and other items referenced in the thesis.<br>For examination purposes only<br><br><br> <br>
DOI: 10.5517/ccdc.csd.cc24609p
title: CCDC 1971981: Experimental Crystal Structure Determination

description: Related Article: Xiaolin Jiang, Zijun Huang, Mohamed Makha, Chen-Xia Du, Dongmei Zhao, Fang Wang, Yuehui Li|2020|Green Chemistry|22|5317|doi:10.1039/D0GC01741H
DOI: 10.6084/m9.figshare.12368864
title: Place Names in West Central District of Tainan

description: <b>來源研究計畫：</b>空間資訊科學與跨領域研究─台江內海地區的人文社會經濟發展與環境變遷-用以處理台江內海地區時空資訊之協同研究平台的探索與建立 (http://gis.rchss.sinica.edu.tw/taijiang/子計畫四)<br>
DOI: 10.6084/m9.figshare.12368864.v2
title: Place Names in West Central District of Tainan

description: <b>來源研究計畫：</b>空間資訊科學與跨領域研究─台江內海地區的人文社會經濟發展與環境變遷-用以處理台江內海地區時空資訊之協同研究平台的探索與建立 (http://gis.rchss.sinica.edu.tw/taijiang/子計畫四)<br>
DOI: 10.6084/m9.figshare.12368294
title: snpnet-Cox results

description: snpnet-Cox is an efficient solver for large scale and high-dimensional Lasso Cox regression problems with genetic predictors. Here we provide its output on 306 time-to-event phenotypes from UK Biobank. <br>The names of the files are in the form (ukbcode).coefficients.tsv, where the ukbid is the UK Biobank code for the time-to-event phenotypes They contain the SNPs selected by snpnet-Cox as well as the corresponding coefficients. The file snpnetCox.map.tsv provides the number of cases and controls, the name, and the ICD 10 code of these phenotypes.<br>We built an interactive app based on these results. Its link is in the reference.<br>Please see our publication for more details.<br>
DOI: 10.6084/m9.figshare.12368864.v1
title: PlaceNamesInWestCentralDistrictOfTainan_Taiwan.csv

description: <b>來源研究計畫：</b>空間資訊科學與跨領域研究─台江內海地區的人文社會經濟發展與環境變遷-用以處理台江內海地區時空資訊之協同研究平台的探索與建立 (http://gis.rchss.sinica.edu.tw/taijiang/子計畫四)<br>
DOI: 10.6084/m9.figshare.12368294.v1
title: snpnet-Cox results

description: snpnet-Cox is an efficient solver for large scale and high-dimensional Lasso Cox regression problems with genetic predictors. Here we provide its output on 306 time-to-event phenotypes from UK Biobank. <br>The names of the files are in the form (ukbcode).coefficients.tsv, where the ukbid is the UK Biobank code for the time-to-event phenotypes They contain the SNPs selected by snpnet-Cox as well as the corresponding coefficients. The file snpnetCox.map.tsv provides the number of cases and controls, the name, and the ICD 10 code of these phenotypes.<br>We built an interactive app based on these results. Its link is in the reference.<br>Please see our publication for more details.<br>
DOI: 10.5285/72f0d514-365a-45c9-9d54-3cb0b9fc71fc
title: Meteorological Data from BGS Virkisjökull-Falljökull Glacier Observatory, 2009-2020

description: This dataset presents meteorological records from 3 weather stations around a glacier in southeast Iceland from 2009-2020. The weather stations were installed as part of British Geological Survey’s Glacier Observatory project, and were positioned at different altitudes close to the ice to record glacier weather. The data is in text format, and records key meteorological parameters including temperature, relative humidity, atmospheric pressure, precipitation, wind speed and direction, and solar irradiance.
The weather stations were placed around Virkisjökull-Falljökull, an outlet glacier of the Öraefajökull ice cap in south east Iceland (AWS1 at 16°48'19"W, 63°57'53"N; AWS3 at 16°47'5"W, 63°58'13"N, and AWS4 at 16°48'7"W , 63°59'52"N). AWS1 was installed in September 2009, with AWS3 installed in September 2010, and AWS4 in September 2011. AWS3 and AWS4 were decommissioned in August 2018, and AWS1 in May 2020.
AWS1 was located 100m from the current glacier margin at 156m a.s.l.; AWS3 sat 50m from the icefall at 444m a.s.l.; and AWS4 was situated on a clifftop overlooking the glacier at 858m a.s.l., close to the Equilibrium Line Altitude of the glacier. These were positioned at different altitudes to determine changes in weather parameters with height, thus producing for example, temperature or humidity gradients.
The three stations were wirelessly linked, allowing data from the upper stations to be offloaded to the datalogger on the lower station. On-site downloads were completed using Campbell Scientific LoggerNet 4.x series software. AWS1 maintained mobile phone telemetry enabling automatic remote downloads of data from all stations on a daily basis, and remote access for software updates and health checks.
Each AWS supported a slightly different sensor array, depending on the requirements of the site, and were mounted on 1.5m Campbell Scientific tripods. All of the stations were designed around a Campbell Scientific CR800 datalogger, and were solar powered, using combinations of PV panels up to 100W, supplying a Campbell Scientific 25Ah battery mounted on the tripod, plus a 110Ah gel cell battery back up in a separate housing.
The data will be of use to researchers and students interested in the weather of southeast Iceland, glacier climate, local influence of glaciers on more regional synoptic weather systems, glacier climate modellers, glacier hydrologists and hydrogeologists.
The BGS project was led and coordinated by Dr Jez Everest, technical support and implementation by Heiko Buxel and data Quality Assurance and checking by Dr Jon Mackay. Any periods where equipment malfunction, testing or replacement meant that no or unreliable data were collected are indicated by a ‘NAN’ value in the datasets.
DOI: 10.6084/m9.figshare.12368282
title: Additional file 4 of Ocular hypertension suppresses homeostatic gene expression in optic nerve head microglia of DBA/2 J mice

description: Additional file 4.
DOI: 10.6084/m9.figshare.12368276
title: Additional file 3 of Ocular hypertension suppresses homeostatic gene expression in optic nerve head microglia of DBA/2 J mice

description: Additional file 3.
DOI: 10.6084/m9.figshare.12368282.v1
title: Additional file 4 of Ocular hypertension suppresses homeostatic gene expression in optic nerve head microglia of DBA/2 J mice

description: Additional file 4.
DOI: 10.5517/ccdc.csd.cc24hc23
title: CCDC 1980964: Experimental Crystal Structure Determination

description: Related Article: Marco Di Giovannantonio, Qiang Chen, José I. Urgel, Pascal Ruffieux, Carlo A. Pignedoli, Akimitsu Narita, Klaus Müllen, Roman Fasel|2020|J.Am.Chem.Soc.|142|12925|doi:10.1021/jacs.0c05701
DOI: 10.6084/m9.figshare.12368270
title: Additional file 2 of Ocular hypertension suppresses homeostatic gene expression in optic nerve head microglia of DBA/2 J mice

description: Additional file 2.
DOI: 10.6084/m9.figshare.12368264
title: Additional file 1 of Ocular hypertension suppresses homeostatic gene expression in optic nerve head microglia of DBA/2 J mice

description: Additional file 1.
DOI: 10.6084/m9.figshare.12368276.v1
title: Additional file 3 of Ocular hypertension suppresses homeostatic gene expression in optic nerve head microglia of DBA/2 J mice

description: Additional file 3.
DOI: 10.6084/m9.figshare.12368264.v1
title: Additional file 1 of Ocular hypertension suppresses homeostatic gene expression in optic nerve head microglia of DBA/2 J mice

description: Additional file 1.
DOI: 10.6084/m9.figshare.12368270.v1
title: Additional file 2 of Ocular hypertension suppresses homeostatic gene expression in optic nerve head microglia of DBA/2 J mice

description: Additional file 2.
DOI: 10.6084/m9.figshare.12368180
title: Additional file 2 of Transitions in wheat endosperm metabolism upon transcriptional induction of oil accumulation by oat endosperm WRINKLED1

description: Additional file 2: Table S2 (excel file). List of differentially expressed genes in AsWRI1-wheat (multiple insert line) endosperm (including starchy endosperm, aleurone cells, seed coat and pericarp) as compared to in control presented in Fig. 9 at time points 10, 18 and 26 days post anthesis (dpa). The results are shown from three biological replicates. Values are fold change (FC) of transcripts per kilobase million (TPM) compared to control. The closest identified homolog in Arabidopsis is given as well as the Arabidopsis gene symbol and proposed enzymatic role. All Arabidopsis data were retrieved from TAIR (https://www.arabidopsis.org/index.jsp).
DOI: 10.6084/m9.figshare.12368180.v1
title: Additional file 2 of Transitions in wheat endosperm metabolism upon transcriptional induction of oil accumulation by oat endosperm WRINKLED1

description: Additional file 2: Table S2 (excel file). List of differentially expressed genes in AsWRI1-wheat (multiple insert line) endosperm (including starchy endosperm, aleurone cells, seed coat and pericarp) as compared to in control presented in Fig. 9 at time points 10, 18 and 26 days post anthesis (dpa). The results are shown from three biological replicates. Values are fold change (FC) of transcripts per kilobase million (TPM) compared to control. The closest identified homolog in Arabidopsis is given as well as the Arabidopsis gene symbol and proposed enzymatic role. All Arabidopsis data were retrieved from TAIR (https://www.arabidopsis.org/index.jsp).
DOI: 10.6084/m9.figshare.12368171
title: Additional file 1 of Transitions in wheat endosperm metabolism upon transcriptional induction of oil accumulation by oat endosperm WRINKLED1

description: Additional file 1: Table S1 (excel file). Zygosity tests of leaves from wheat lines transformed with oat WRI1 (AsWRI1). Plants developed from segregating seeds. Bombardment codes (B = Bombardment Number; R = Replicate Number and P = Plant Number).
DOI: 10.6084/m9.figshare.12368162
title: Additional file 1 of A review of reviews on principles, strategies, outcomes and impacts of research partnerships approaches: a first step in synthesising the research partnership literature

description: Additional file 1.
DOI: 10.6084/m9.figshare.12368162.v1
title: Additional file 1 of A review of reviews on principles, strategies, outcomes and impacts of research partnerships approaches: a first step in synthesising the research partnership literature

description: Additional file 1.
DOI: 10.6084/m9.figshare.12368171.v1
title: Additional file 1 of Transitions in wheat endosperm metabolism upon transcriptional induction of oil accumulation by oat endosperm WRINKLED1

description: Additional file 1: Table S1 (excel file). Zygosity tests of leaves from wheat lines transformed with oat WRI1 (AsWRI1). Plants developed from segregating seeds. Bombardment codes (B = Bombardment Number; R = Replicate Number and P = Plant Number).
DOI: 10.6084/m9.figshare.12368045
title: Additional file 2 of Lifestyle and the presence of helminths is associated with gut microbiome composition in Cameroonians

description: Additional file 2. All supplementary tables.
DOI: 10.6084/m9.figshare.12368045.v1
title: Additional file 2 of Lifestyle and the presence of helminths is associated with gut microbiome composition in Cameroonians

description: Additional file 2. All supplementary tables.
DOI: 10.6084/m9.figshare.12367988
title: Additional file 1 of In vitro conjugation kinetics of AmpC, broad spectrum and extended-spectrum beta-lactamase-producing Escherichia coli donors and various Enterobacteriaceae recipients

description: Additional file 1.
DOI: 10.6084/m9.figshare.12367988.v1
title: Additional file 1 of In vitro conjugation kinetics of AmpC, broad spectrum and extended-spectrum beta-lactamase-producing Escherichia coli donors and various Enterobacteriaceae recipients

description: Additional file 1.
DOI: 10.6084/m9.figshare.12367844
title: Additional file 5 of Nanopore sequencing reveals genomic map of CTX-M-type extended-spectrum β-lactamases carried by Escherichia coli strains isolated from blue mussels (Mytilus edulis) in Norway

description: Additional file 5. Single nucleotide polymorphism differences in Escherichia coli strains 631 compared with E. coli ST38 strains from different sources and countries.
DOI: 10.6084/m9.figshare.12367835
title: Additional file 4 of Nanopore sequencing reveals genomic map of CTX-M-type extended-spectrum β-lactamases carried by Escherichia coli strains isolated from blue mussels (Mytilus edulis) in Norway

description: Additional file 4. List of genes involved in conjugal transfer detected in strains 631 and 1500.
DOI: 10.6084/m9.figshare.12367844.v1
title: Additional file 5 of Nanopore sequencing reveals genomic map of CTX-M-type extended-spectrum β-lactamases carried by Escherichia coli strains isolated from blue mussels (Mytilus edulis) in Norway

description: Additional file 5. Single nucleotide polymorphism differences in Escherichia coli strains 631 compared with E. coli ST38 strains from different sources and countries.
DOI: 10.6084/m9.figshare.12367832
title: Additional file 3 of Nanopore sequencing reveals genomic map of CTX-M-type extended-spectrum β-lactamases carried by Escherichia coli strains isolated from blue mussels (Mytilus edulis) in Norway

description: Additional file 3. List of virulence genes and biocide/metal resistance genes detected in strains 631 and 1500 (i.e., names and their function).
DOI: 10.6084/m9.figshare.12367835.v1
title: Additional file 4 of Nanopore sequencing reveals genomic map of CTX-M-type extended-spectrum β-lactamases carried by Escherichia coli strains isolated from blue mussels (Mytilus edulis) in Norway

description: Additional file 4. List of genes involved in conjugal transfer detected in strains 631 and 1500.
DOI: 10.6084/m9.figshare.12367832.v1
title: Additional file 3 of Nanopore sequencing reveals genomic map of CTX-M-type extended-spectrum β-lactamases carried by Escherichia coli strains isolated from blue mussels (Mytilus edulis) in Norway

description: Additional file 3. List of virulence genes and biocide/metal resistance genes detected in strains 631 and 1500 (i.e., names and their function).
DOI: 10.6084/m9.figshare.12367760
title: Additional file 2 of Primary outcome reporting in adolescent depression clinical trials needs standardization

description: Additional file 2. Outcome reporting comprehensiveness across 18 adolescent major depressive disorder trials, by checklist item. Excel document.
DOI: 10.6084/m9.figshare.12367760.v1
title: Additional file 2 of Primary outcome reporting in adolescent depression clinical trials needs standardization

description: Additional file 2. Outcome reporting comprehensiveness across 18 adolescent major depressive disorder trials, by checklist item. Excel document.
DOI: 10.6084/m9.figshare.12367742
title: Solar Atlas of New Zealand from satellite imagery

description: The utilisation of solar resources has become of utmost importance for the transition of the global, carbon intensive economy. In New Zealand the uptake of solar energy has increased substantially, but the relative contribution to the overall energy mix is still small. Previous research efforts on the solar resource across the country are revisited with improved satellite-modelled data from Solargis to derive a solar atlas for the country. A comparison is made with NIWA data, which shows that the modelled data are at an adequate level of accuracy and improves our understanding of the solar resource at an appropriate spatial and temporal resolution. The solar atlas makes available a commercial satellite data source and informs further investigations into how solar can, and will, play a more meaningful role in our transition to a low carbon future.
DOI: 10.6084/m9.figshare.12367742.v1
title: Solar Atlas of New Zealand from satellite imagery

description: The utilisation of solar resources has become of utmost importance for the transition of the global, carbon intensive economy. In New Zealand the uptake of solar energy has increased substantially, but the relative contribution to the overall energy mix is still small. Previous research efforts on the solar resource across the country are revisited with improved satellite-modelled data from Solargis to derive a solar atlas for the country. A comparison is made with NIWA data, which shows that the modelled data are at an adequate level of accuracy and improves our understanding of the solar resource at an appropriate spatial and temporal resolution. The solar atlas makes available a commercial satellite data source and informs further investigations into how solar can, and will, play a more meaningful role in our transition to a low carbon future.
DOI: 10.17608/k6.auckland.12367685
title: Data used in Peralta et al. Journal of Animal Ecology 2020

description: Data used in Peralta et al. 'Strength of niche processes for species interactions is lower for generalists and exotic species' J Animal Ecology 2020<br>
DOI: 10.17608/k6.auckland.12367685.v2
title: Data used in Peralta et al. Journal of Animal Ecology 2020

description: Data used in Peralta et al. 'Strength of niche processes for species interactions is lower for generalists and exotic species' J Animal Ecology 2020<br>
DOI: 10.6084/m9.figshare.12367631
title: raw data

description: This file contains the raw data set, including responses for each item in the GASP subscale, and culpability attributions for scenarios involving different kinds of mitigating factors (or no mitigating factor at all).
DOI: 10.6084/m9.figshare.12367634
title: summary data

description: This file contains the summary data set, averaging across individual items for each GASP subscale, and averaging culpability attributions across different kinds of mitigating factors.
DOI: 10.17608/k6.auckland.12367685.v1
title: Data used in Peralta et al. Journal of Animal Ecology 2020

description: Data used in Peralta et al. 'Strength of niche processes for species interactions is lower for generalists and exotic species' J Animal Ecology 2020<br>
DOI: 10.6084/m9.figshare.12367634.v1
title: summary data

description: This file contains the summary data set, averaging across individual items for each GASP subscale, and averaging culpability attributions across different kinds of mitigating factors.
DOI: 10.6084/m9.figshare.12367631.v1
title: raw data

description: This file contains the raw data set, including responses for each item in the GASP subscale, and culpability attributions for scenarios involving different kinds of mitigating factors (or no mitigating factor at all).