cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.68qt629/7
title: C20UBL.simu.concate121pro.35taxon.bl5x.phy.tar

description: This file is for the section "35-taxon Tree Simulations with Empirically-derived Parameters" in the main text. The simulated data (100 sets of concatenated alignments) are included. Also included are the 121 35-taxon generating trees from the individual microsporidia datasets trimmed to 35 taxa. The script for simulating the alignments and a C program used to increase the branches to Microsporidia and to Pyrococcus by 5 fold are included.
DOI: 10.5061/dryad.68qt629/8
title: simupmsfUBLforILS.tar

description: This data is for the section "Four-taxon Tree Simulations with Empirically-derived Parameters and Gene Tree Heterogeneity" in the main text. The data are simulated under PMSF+UBL. The simulated alignments (100 sets) and the generating trees (97 MF trees, 12 MA trees and 12 other trees) are included. The internal branch of the trees are 10 times shortened.
DOI: 10.5061/dryad.6t4s455/1
title: dryad

description: This directory contains each data files and scripts used for simulations and analysis of Bourg etal 2019
DOI: 10.5061/dryad.77r7b60/1
title: RedPandaSurveyData

description: This data represents the aggregated environmental variables, eg., tree height, tree DBH, canopy cover, bamboo abundance and tree species richness of red panda presence locations.
DOI: 10.5061/dryad.7c7b561/15
title: 18FPBR111PET_14of16

description: This .zip file, one of sixteen parts (see file name), contains dynamic PET scans of DFP or vehicle exposed rats. Data is stored in raw format (4 byte little endian float) with image parameters stored within a header file. Additional information for each animal (eg: treatment, injected radiotracer dose, weight) can be found in the meta data spreadsheet.
DOI: 10.5061/dryad.7c7b561/17
title: 18FPBR111PET_16of16

description: This .zip file, one of sixteen parts (see file name), contains dynamic PET scans of DFP or vehicle exposed rats. Data is stored in raw format (4 byte little endian float) with image parameters stored within a header file. Additional information for each animal (eg: treatment, injected radiotracer dose, weight) can be found in the meta data spreadsheet.
DOI: 10.5061/dryad.7c7b561/18
title: Scan_Meta_Data_Spreadsheet

description: This .csv file contains details required for analysis and interpretation of [18F]PBR111 PET data. Specifically: treatment group, animal weight at the time of scanning, and injected radiotracer dose.
DOI: 10.5061/dryad.7c7b561/19
title: LuminexResultsHippocampusPiriformCortex_PCRResults

description: This .xlsx file contains results from multiplex immunoassays for cytokine protein levels and PCR assessment of cytokine gene expression. Data sets are differentiated by the naming of spreadsheet tabs. The associated README file contains information regarding materials and methods.
DOI: 10.5061/dryad.83g8j8f/1
title: Supporting Information

description: Table S1. The fish species included in this study. The table includes the species abbreviation, the native or exotic species status (N/E) in Italian watercourses and the number of total, lowland and upland sites where each species was present
DOI: 10.5061/dryad.9811959/1
title: Kilvitis et al. Dryad Data

description: The excel sheet contains identifier data, TLR4 expression, SNP and methylation data.
DOI: 10.5061/dryad.9c6k203/1
title: Capture Stress Experiment

description: This is the rattle acoustic data used in the experiment examining the effects of capture-induced stress on rattle acoustic structure
DOI: 10.5061/dryad.9c6k203/2
title: GC Rattle Experiment

description: This is the rattle acoustic data used for the experiment assessing the influence of exogenous GCs on rattle acoustic structure
DOI: 10.5061/dryad.bb966qf/1
title: Anderson2019_CalidrisMorphology

description: See README file for data details.
DOI: 10.5061/dryad.c0n737b/8
title: A8_FI_birds

description: Current and projected future functional identity, i.e. mean bill width, mean bill length, mean Kipp’s index and mean body mass of frugivorous bird communities along an elevational gradient in the Manu National Park in south-east Peru. Mean values are computed based on the z-transformed raw traits (i.e. traits have been standardized to a mean of zero and a standard deviation of one according to the entire species pool). Projections were done according to five general circulation models (CCSM4, HadGEM2-ES, MIROC 5, MRI-CGCM and NorESM), representative concentration pathway 8.5 and the year 2080. Furthermore, we applied three vertical dispersal scenarios (range contraction, range expansion and range shift). For details on the projections, please read the methods in the published article associated with this data set.
DOI: 10.5061/dryad.cc46m73/1
title: Data Cordeiro & Neri 2019 Nordic Journal of Botany
DOI: 10.5061/dryad.g860c9s/1
title: Data_Microcebus_murinus_CoR

description: Data_Microcebus_murinus_CoR.csv contains individuals’ characteristics and reproductive history, and the dates each individual enters and exits each reproductive season, from first reproductive success to death or censoring time, collected on captive female grey mouse lemurs.
DOI: 10.5061/dryad.g8c0vm8/1
title: Appendix e-1 Search strategy

description: Search strategy for Cochrane Library, Embase, and PubMed, 10 November 2017
DOI: 10.5061/dryad.g8c0vm8/2
title: Appendix e-2 Extracted study data

description: Included studies and extracted study data
DOI: 10.5061/dryad.gb7k5d1/1
title: Rowsey et al. 2019 Data Files

description: R script, required files, and specimen landmark data associated with analyses performed in Rowsey et al. (2019) Evolution. The analysis was performed primarily in R with some analysis performed in Levolution (Duchen et al. 2017). Data were collected from specimens borrowed from the Field Museum of Natural History, United States National Museum of Natural History, American Museum of Natural History, and Harvard University Museum of Comparative Zoology.
DOI: 10.5061/dryad.h1c0b52/1
title: one locus model

description: main code for one locus model
DOI: 10.5061/dryad.h1c0b52/2
title: run_one_locus_model

description: higher-level code that uses the one-locus model to produce figure S1
DOI: 10.5061/dryad.h1c0b52/3
title: multilocus_model

description: main code for multilocus simulations
DOI: 10.5061/dryad.h1c0b52/4
title: run_multilocus_model

description: higher-level code that uses the multilocus model to produce figures S2-S4
DOI: 10.5061/dryad.kb79121/10
title: arx-3_EMBD0055_MS
DOI: 10.5061/dryad.kb79121/11
title: ast-1_EMBD0074_GLS
DOI: 10.5061/dryad.kb79121/12
title: ast-1_EMBD0074_MS
DOI: 10.5061/dryad.kb79121/2
title: aph-1_EMBD0022_MS
DOI: 10.5061/dryad.kb79121/3
title: apl-1_EMBD0082_GLS
DOI: 10.5061/dryad.kb79121/4
title: apl-1_EMBD0082_MS
DOI: 10.5061/dryad.kb79121/5
title: aps-1_EMBD0013_GLS
DOI: 10.5061/dryad.kb79121/6
title: aps-1_EMBD0013_MS
DOI: 10.5061/dryad.kb79121/8
title: arx-1_EMBD0006_MS
DOI: 10.5061/dryad.n500p94/1
title: AcousticMonitoring_Krishnan_2019_Data

description: Raw data for calculation of abundance indices, and values of song parameters used to calculate acoustic space. Other data are in the manuscript supplementary files.
DOI: 10.5061/dryad.p933f2c/2
title: Dietel et al_AT-rich and GC-rich insert sequences
DOI: 10.5061/dryad.q727ff4/1
title: Checklist Of Macrophytes In Morocco
DOI: 10.5061/dryad.rv70cs1/1
title: Raw data -- Lucero et al. 2019 ENEMY RELEASE

description: Establishment of Bromus tectorum plants in cages open to and protected from rodents in Iran and the USA, and seed removal (i.e., preference) patterns of rodents in Iran, Uzbekistan, and the USA.
DOI: 10.5061/dryad.rv71c.2
title: Data from: Suppression and facilitation of human neural responses
DOI: 10.5061/dryad.rv71c.2/1.2
title: Schallmo_etal_2017_SuppressionFacilitation

description: This file contains the data for the manuscript entitled "Suppression and facilitation of human neural responses" Authors: Schallmo, M-P., Kale, A.M., Millin, R., Flevaris, A.V., Brkanac, Z., Edden, R.A.E., Bernier, R.A., 
Murray, S.O.
DOI: 10.5061/dryad.v4v289p/1
title: Baited Stations

description: Details of camera trap pictures taken at 8 baited stations in San Guillermo National Park (Argentina), including species registered, total number of Andean condors, their age (Adult, Juvenile, Subadult, Age indet.) and sex (Female, male and Sex Indet.).
DOI: 10.17632/9nmkdsdy5h.1
title: Data for: GENERATION OF ALKALIC FLOOD RHYOLITE: INSIGHTS FROM EVOLUTION OF THE PAISANO VOLCANO, DAVIS MOUNTAINS, TRANS-PECOS TEXAS, U.S.A.

description: Whole-rock chemical analyses and Electron Probe Microanalyses
DOI: 10.17632/9nmkdsdy5h.2
title: Data for: GENERATION OF ALKALIC FLOOD RHYOLITE: INSIGHTS FROM EVOLUTION OF THE PAISANO VOLCANO, DAVIS MOUNTAINS, TRANS-PECOS TEXAS, U.S.A.

description: Whole-rock chemical analyses and Electron Probe Microanalyses
DOI: 10.17632/b3697s73mt.1
title: Data for: Market Potential and Economic Development with Non-homotheticity

description: This data file is used to replicate the main results in Market Potential and Economic Development with Non-homotheticity. Please refer to the paper for detailed description.
DOI: 10.17632/g8g68tpc6s.1
title: Data for: Ore fluid, geochronology and tectonic setting of mesothermal gold metallogeny in southeastern Jilin Province: A case study of the Shajingou gold deposit

description: This is a research data file about the Shajingou gold deposit
DOI: 10.17632/t27jkf4ywv.1
title: Data for: Tracking Chemical Alteration in Magmatic Zircon Using Rare Earth Element Abundances

description: Zircon trace element data collected by ion microprobe
DOI: 10.17632/xxgj6jny9y.1
title: Data for: Viscosity and contact angle prediction of low water-containing heavy crude oil diluted with light oil

description: Table 3 is the basic compositions and physical properties of the heavy crude oil and light oil samples. Table 4 is the measured viscosity of crude oils at different temperature points. Table 5 shows various correlations for crude oil viscosity at different temperatures. Table 6 gives average relative error, average absolute error, maximum relative error, and standard deviation for all correlations in different dilution ratios. Table 8 describes the comparison between the predicted and actual viscosities of heavy oil related to water contents. Table 9 is the contact angles between all mixture oils and both acrylic tube and X80 pipeline steel surfaces in the air atmosphere and in water bath. Table 10 is the surface roughness of two materials. Table 11 describes the comparison between the predicted and actual contact angle of previous model and the model in this paper.
DOI: 10.17632/zr74hj5mz8.1
title: Data for: Effect of irrigation on charcoal rot severity, yield loss and colonization of soybean and sunflower

description: Raw data related to the manuscript in question
DOI: 10.5061/dryad.17pk7v8/1
title: Instructions and data files
DOI: 10.5061/dryad.18516pq/1
title: Whitford et al Determinants of predation success data

description: data associated with Whitford et al 2019 "Determinants of predation success: how to survive an attack from a rattlesnake "
DOI: 10.5061/dryad.1k6313f/1
title: background_sample

description: Allozyme genotypes at 9 loci and ploidy information for the 200 Potamopyrgus antipodarum snails from Lake Alexandrina, New Zealand, of the random sample collected in 2010 (“background sample”). Genotypes were obtained with cellulose acetate electrophoresis. Ploidy level was assigned based on asymmetric banding pattern in heterozygotes. Loci used for assigning ploidy level include: 6PGD, MPI, IDH2, PGM1 and PGM2 (ploidy assignment based on AAT1, AAT2, IDH1 and PEP-D was not reliable). 
Descriptions of column headings and abbreviations used: 
A: SNAIL - snail number.
B: PLOIDY - ploidy level (0-homozygote, 2-diploid, 3-triploid, 4-tetraploid). Diploid snails are sexual, and polyploid snails are asexual; homozygotes were included in the sexual group.
C: GENOTYPE_ID - The numbers above zero are unique clone numbers. Zeroes indicate genotypes for which unique clone number could not be assigned. Sexual snails are marked as "S".
D-L: column names are allozyme loci names. Genotypes are coded with a single digit. Loci for which the banding pattern is unreliable for assigning ploidy level are left with 2 alleles for triploid heterozygotes.
DOI: 10.5061/dryad.1sn2352/1
title: Ousterhout_et_al_Competition_data

description: Results from the experiment manipulating Enallagma species relative abundances across lakes. Shown are lakes (all in AR), Date the cages were pulled, cage number, species acronym (see meta-data), head width, and whether these are the initial for final measurements.
DOI: 10.5061/dryad.22mv245/2
title: De Petrillo & Rosati Study 2 (Probability Inference)

description: Trial data from Study 2 (probability inference). Key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.22mv245/3
title: De Petrillo & Rosati Study 3 (Non-causal Control)

description: Trial data from Study 3 (noncausal control). Key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.22mv245/4
title: Video S1: Procedure demonstrations and monkey response

description: The video shows the lottery machine task used in all three studies. The first clip shows the Fruit Preference Validation procedure from Study 1 from the monkey's perspective. Here, E1 uses a stick (out of the monkey's view) to rotate the lottery machine; in this study the population of fruit is occluded in this phase. E1 then releases a lemon from the machine to the clear cup below, and says “now” to mark the start of the trial. Each trial then lasts 10 s, and the looking time of the monkey is recorded. The second clip shows the Probability Inference procedure from Study 2. Here, E1 open the curtains and reveals a lemon machine containing a population with a probable likelihood distribution (3:1 distribution of lemons and apples). Then, after rotating the machine, she releases the expected outcome (a lemon). The third clip shows the Non-causal control procedure from Study 3. E1 opens the curtains and reveals again a lemon machine, but this time it contains a population with a possible likelihood distribution (only one type of fruit is present). After rotating the cube, E1 visibly pulls the impossible (unexpected) outcome (an apple) from her pocket and then places it into the container above the cube. The final clip shows an example of the monkey's looking response in the task.
DOI: 10.5061/dryad.287f2n0/35
title: Population_Data

description: Population data: Pop=Population, lat=Latitude, alt=Altitude, Heterozygosity=Heterozygosity, pseason=Season duration in months, DegMoBelow15=Proportion of reproductive season below 15C, pplasticity=Population mean floral reflectance plasticity, TotalPrecip.=Total reproductive season precipitation
DOI: 10.5061/dryad.287f2n0/36
title: 95_CI_Final

description: 95_CI_Final.xlsx: Data of all bootstrapped values of Pst for each pairwise population comparison. Lower and upper 95% CI values are highlighted in yellow
DOI: 10.5061/dryad.287f2n0/37
title: BootReflectance

description: Raw temperature-sensitive floral reflectance plasticity data for all populations.
DOI: 10.5061/dryad.287f2n0/38
title: ALL_VALUES_CI_FINAL

description: Normalized Data for input into GraphPad Prism 6
 Comparison: Pairwise population comparison
 Physal_Distance: Shortest distance between populations over land in meters
 Thermal_PC1: First principal component from PCA integrating Proportion of Reproductive season between 15 degrees C and 5 degrees C and Duration of Reproductive season
 DegMoB15: Proportion of Reproductive season between 15 degrees C and 5 degrees C
 diff_months: Environmental differentiation in duration of the reproductive season in months
 ReproPrecip: Environmental differentiation in total precipitation of the reproductive season in kg m^2
 Magnitude: Thermal Magnitude of the Reproductive Season
Magnitude_PC1: First principal component from PCA integrating Thermal Magnitude of the Reproductive Season and Duration of Reproductive season
Mag_Therm_PC1: First principal component from PCA integrating Proportion of Reproductive season between 15 degrees C and 5 degrees C, Thermal Magnitude of the Reproductive Season, and Duration of Reproductive season 
D: Genetic Differentiation Jost's D
 lowerD: lower 95% CI Genetic Differentiation Jost's D
 upperD: upper 95% CI Genetic Differentiation Jost's D
 Fst: Genetic Differentiation Fst
 lowerFst: lower 95% CI Genetic Differentiation Fst
 upperFst: upper 95% CI Genetic Differentiation Fst
 Pst: Phenotypic differentiation in temperature-sensitive floral reflectance plasticity
 lowerPst: lower 95% CI Phenotypic differentiation in temperature-sensitive floral reflectance plasticity
 upperPst: upper 95% CI Phenotypic differentiation in temperature-sensitive floral reflectance plasticity
DOI: 10.5061/dryad.287f2n0/39
title: Readme

description: Readme file with detailed description of each file associated with this publication
DOI: 10.5061/dryad.368cf90/1
title: Transposed GPS tracking data underlying the linear mixed effects models

description: Transposed elephant GPS tracking data underlying the linear mixed effects models. Please note that the GPS coordinates have been transposed for each elephant separately and are centred on the coordinates of 0,0 to safeguard the elephants by anonymising their movement patterns. Requests for the original data can be made to Save the Elephants (https://www.savetheelephants.org/).
DOI: 10.5061/dryad.368cf90/2
title: Transposed GPS tracking data underlying the three-state hidden Markov models

description: Transposed elephant GPS tracking data underlying the three-state hidden Markov models. Please note that the GPS coordinates have been transposed for each elephant separately and are centred on the coordinates of 0,0 to safeguard the elephants by anonymising their movement patterns. Requests for the original data can be made to Save the Elephants (https://www.savetheelephants.org/).
DOI: 10.5061/dryad.3d01n50/1
title: raw data

description: raw data for table and fig.
DOI: 10.5061/dryad.4558p38/1
title: all species detected

description: data for the detections of all species in camera traps and leeches
DOI: 10.5061/dryad.4558p38/2
title: camera trap input data

description: input data for single species models using only camera trap detection histories
DOI: 10.5061/dryad.4558p38/3
title: detections and size

description: detection data for camera traps and leeches (broken down by leech type), as well as body size information for each species
DOI: 10.5061/dryad.4558p38/4
title: model code combined

description: JAGS model code for the combined dataset
DOI: 10.5061/dryad.4558p38/5
title: model code camera trap

description: JAGS model code analysing the camera trap dataset
DOI: 10.5061/dryad.4558p38/6
title: model code leech

description: JAGS model code for analysing the leech dataset
DOI: 10.5061/dryad.46121/1
title: Data_EcolLettPaper
DOI: 10.5061/dryad.48b2dd0/1
title: Survival data

description: Data for survival analysis in the paper. The response is obs, indicating if an individual seedling was observed on the second visit.
DOI: 10.5061/dryad.48b2dd0/2
title: Data for analyses of number of seedlings

description: The response is No, the number of seedlings in each plot, as described in the paper.
DOI: 10.5061/dryad.55p667b/1
title: Petersen_Insect_Mobilome_Repeat_Libraries.tar

description: Repeat libraries including filter patterns and list of elements to be excluded.
DOI: 10.5061/dryad.5q04b32/1
title: all observations from AVRs on African penguins

description: Observations classified from animal-borne video recorders (AVR) deployed on African penguins at Stony Point, South Africa between 2015 and 2018.Data includes classified behaviours of penguins, intra- and interspecific behaviours and counts, foraging behaviour.
DOI: 10.5061/dryad.5q04b32/3
title: data used in LMM models

description: File contains data used in LMM models to assess influence of African penguin group size on the time elapsed since the start of a dive bout to first encounters with volant seabirds. Fields include penguin ID, bout ID, elapsed (time to encounter), maxconsp (maximum penguin group size in dive bout), initconsp( initial group size (in first 5 min of dive bout) and intermode (flight or surface).
DOI: 10.5061/dryad.6hd7bf7/2
title: Kastetal_FullSubmission_Dataset041519

description: This excel spreadsheet contains the raw numbers for all quantitative data included in the manuscript. The excel file is organized into sheets that contain data pertaining to different experiments and that are titled according to the manuscript figures in which the data appear.
DOI: 10.5061/dryad.73bh2q8/1
title: WM_data

description: This file explains all of the variables in the dataset that accompany: Shinkawa Y et al., Mathematical modeling for the prediction of cerebral white matter lesions based on clinical examination data: WM_data.csv.
DOI: 10.5061/dryad.7bj715s/1
title: Floral morphs and flower measurements of P. parviflora in the Pantanal Wetlands

description: sheet1: Geographic coordinates, floral-morph frequencies, inflorescence counts, population-size estimates for sampled populations of Pontederia parviflora in the Pantanal Wetlands. sheet2: Measurements of flower length, petal width, perianth-tube aperture and base of corolla width, and sex organs (l, m and s denotes anthers levels) for the three floral morphs of Pontederia parviflora in five populations sampled in the Pantanal wetlands; sheet3: Number of senesced flowers, open flowers, buds and total flower number of inflorescences of the three floral morphs of Pontederia parviflora; sheet4: number of aborted fruit and seed set in infructescences of the three floral morphs in five populations in the Pantanal; sheet5: Mean pollen size and pollen number of the l-, m- and s-anthers of the L-, M-, and S-morph of Pontederia parviflora sampled in five populations in the Pantanal.
DOI: 10.5061/dryad.92m95r1/1
title: Appendix S1

description: Species records.
DOI: 10.5061/dryad.92m95r1/2
title: Appendix S2

description: Species photographic material.
DOI: 10.5061/dryad.95p761k/1
title: aucho_endosymbionts-master

description: Full GitHub Repository including all data (trait, phylogeny, alignments) and R-code to perform all analyses and create all figures in Bell-Roberts, Douglas and Werner (2019).
DOI: 10.5061/dryad.c1t54v2/1
title: Gametc compatibity in Mesocentrotus franciscanus

description: Worksheets (1) GRP genotypes as a function of body size, (2) fertilization success, (3-6) EBR1 sequence data
DOI: 10.5061/dryad.c4v2r8v/1
title: BCCH_cap_hist_1415

description: Capture history and site covariates, including winter microclimate variables. Variable abbreviations are as follows: ch = capture history; yr = year; spp = species; Ag = Age (0 = HY; 1 = AHY); treeden = density of trees/ha; disttourb = distance to urban center (km); Area = focal patch area (ha); hdd = cumulative degree-days (C); MeanT = Average winter temperature (C); MinT = Average minimum temperature (C); CVT = Coefficient of variation in minimum temperature; Snow = total accumulated snowfall (cm); Ncoldwet = Number of cold (below -18C) and wet (&gt; 1cm snowfall) days; Mi = Body condition index; ISI = Impervious surface (%); Pfor = Percent forest (%); For_ED = Forest Edge Density (m^2); For_ENN = Area-weighted mean Euclidean Nearest Neighbor distance between forest patches in the landscape (m^2); PA = Perimeter:Area ratio of focal forest patch.