cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20130884
title: Additional file 5 of Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks

description: Additional file 5: Table S5. Lists of differentially expressed genes with their annotation and read counts for all libraries. Columns: Gene ID in the meta-transcriptome, Best BLASTX hit against the SwissProt database, Best BLASTX hit on theUniref90 database, list of GO terms associated, normalized reads counts in Fragments per Kilobase per Million reads (FPKM) for each libraries (Synganglion or Whole Body, Fed or Unfed ticks, as precised by the column title. Below each each library name, the terms «Up», «Down» or «NI» respectively indicate up-regulation, down-regulation, or that the library was not included in the statistical analysis. Sheet A (A – Syn+ genes): comparison between the synganglion and whole body libraries, n=8483 genes up-regulated in the synganglion. Sheet B (B – Syn- genes): comparison between the synganglion and whole-body libraries, n=5040 genes down-regulated in the synganglion. Sheet C (C – Fed+ genes, Syn libraries only): comparison between the synganglion of fed ticks and the synganglion of unfed ticks, genes up-regulated in fed ticks. Sheet D (D – Fed- genes , Syn libraries only): comparison between the synganglion of fed ticks and the synganglion of unfed ticks, genes down-regulated in fed ticks.
DOI: 10.6084/m9.figshare.20130887
title: Additional file 6 of Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks

description: Additional file 6: Table S6. GenBank accessions of the cysloop LGICs, First column, short name of each gene as used in the meta-transcriptome. All sequences were reconstructed in this study and deposited by our group, based on new synganglion assemblies, except gly-1 and gly-2 for which we used contigs sequences already published in GenBank.
DOI: 10.6084/m9.figshare.20130887.v1
title: Additional file 6 of Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks

description: Additional file 6: Table S6. GenBank accessions of the cysloop LGICs, First column, short name of each gene as used in the meta-transcriptome. All sequences were reconstructed in this study and deposited by our group, based on new synganglion assemblies, except gly-1 and gly-2 for which we used contigs sequences already published in GenBank.
DOI: 10.6084/m9.figshare.20295711
title: Additional file 1 of Meta-analysis using Python: a hands-on tutorial

description: Additional file 1: Haloperidol.txt
DOI: 10.6084/m9.figshare.20295711.v1
title: Additional file 1 of Meta-analysis using Python: a hands-on tutorial

description: Additional file 1: Haloperidol.txt
DOI: 10.6084/m9.figshare.20295717
title: Additional file 3 of Meta-analysis using Python: a hands-on tutorial

description: Additional file 3: Subgroup.txt
DOI: 10.6084/m9.figshare.20295717.v1
title: Additional file 3 of Meta-analysis using Python: a hands-on tutorial

description: Additional file 3: Subgroup.txt
DOI: 10.6084/m9.figshare.20295720.v1
title: Additional file 4 of Meta-analysis using Python: a hands-on tutorial

description: Additional file 4: Cochrane.csv
DOI: 10.6084/m9.figshare.20295720
title: Additional file 4 of Meta-analysis using Python: a hands-on tutorial

description: Additional file 4: Cochrane.csv
DOI: 10.6084/m9.figshare.20295723
title: Additional file 5 of Meta-analysis using Python: a hands-on tutorial

description: Additional file 5:
DOI: 10.6084/m9.figshare.20295723.v1
title: Additional file 5 of Meta-analysis using Python: a hands-on tutorial

description: Additional file 5:
DOI: 10.6084/m9.figshare.20295726
title: Additional file 6 of Meta-analysis using Python: a hands-on tutorial

description: Additional file 6:
DOI: 10.6084/m9.figshare.20295726.v1
title: Additional file 6 of Meta-analysis using Python: a hands-on tutorial

description: Additional file 6:
DOI: 10.6084/m9.figshare.20295798
title: Additional file 1 of Association between foot posture and tibiofemoral contact forces during barefoot walking in patients with knee osteoarthritis

description: Additional file 1.
DOI: 10.6084/m9.figshare.20295798.v1
title: Additional file 1 of Association between foot posture and tibiofemoral contact forces during barefoot walking in patients with knee osteoarthritis

description: Additional file 1.
DOI: 10.6084/m9.figshare.20295810
title: Additional file 1 of The IMD and Toll canonical immune pathways of Triatoma pallidipennis are preferentially activated by Gram-negative and Gram-positive bacteria, respectively, but cross-activation also occurs

description: Additional file 1: Table S1. Oligonucleotide sequences of T. pallidipennis transcripts used in this work.
DOI: 10.6084/m9.figshare.20295813
title: Additional file 2 of The IMD and Toll canonical immune pathways of Triatoma pallidipennis are preferentially activated by Gram-negative and Gram-positive bacteria, respectively, but cross-activation also occurs

description: Additional file 2: Table S2. Bacterial challenge interfered and survival assays groups.
DOI: 10.6084/m9.figshare.20295813.v1
title: Additional file 2 of The IMD and Toll canonical immune pathways of Triatoma pallidipennis are preferentially activated by Gram-negative and Gram-positive bacteria, respectively, but cross-activation also occurs

description: Additional file 2: Table S2. Bacterial challenge interfered and survival assays groups.
DOI: 10.6084/m9.figshare.20295810.v1
title: Additional file 1 of The IMD and Toll canonical immune pathways of Triatoma pallidipennis are preferentially activated by Gram-negative and Gram-positive bacteria, respectively, but cross-activation also occurs

description: Additional file 1: Table S1. Oligonucleotide sequences of T. pallidipennis transcripts used in this work.
DOI: 10.6084/m9.figshare.20295832
title: Additional file 2 of Network analysis of synovial RNA sequencing identifies gene-gene interactions predictive of response in rheumatoid arthritis

description: Additional file 2. Supplementary tables S1-5.
DOI: 10.6084/m9.figshare.20295832.v1
title: Additional file 2 of Network analysis of synovial RNA sequencing identifies gene-gene interactions predictive of response in rheumatoid arthritis

description: Additional file 2. Supplementary tables S1-5.
DOI: 10.6084/m9.figshare.20295999
title: China NPP, Rs and Rh ground sample observation data

description: China NPP, Rs and Rh ground sample observation data
DOI: 10.5281/zenodo.6417479
title: GNSS-A data obtained at the SGO-A sites "TOS2", "KUM2", "FUKU", and "MYGI" for the identical four transponder-array

description: Contains the GNSS-A data obtained by the Japan Coast Guard at the SGO-A sites "TOS2", "KUM2", "FUKU", and "MYGI" for the identical four transponder-array. The datasets are stored in the following directories and files for analyses after array determination:<br> -[initcfg]: contains initial site-parameter files<br> -[obsdata]: contains initial acoustic observation files<br> -[single-default]: contains the prep. results (without array-geometry constraint)<br> -[cfgfix]: contains site-parameter files for array-geometry constraint analysis<br> -[fix4sta-abic]: contains the empirical Bayes' results obtained with array-geometry constraint These data can be/were processed with GARPOS v1.0.1, GARPOS-MCMC v1.0.0.
description: The observations were performed by the survey vessels operated by the Japan Coast Guard.
DOI: 10.6084/m9.figshare.20295835.v1
title: Additional file 1 of Time to recovery and its predictors among critically ill patients on mechanical ventilation from intensive care unit in Ethiopia: a retrospective follow up study

description: Additional file 1:
DOI: 10.6084/m9.figshare.20295835
title: Additional file 1 of Time to recovery and its predictors among critically ill patients on mechanical ventilation from intensive care unit in Ethiopia: a retrospective follow up study

description: Additional file 1:
DOI: 10.6084/m9.figshare.20296182.v1
title: Additional file 3 of Level of health literacy in Latvia and Lithuania: a population-based study

description: Additional file 3.
DOI: 10.6084/m9.figshare.20296188
title: Additional file 2 of Effect of preoperative nutritional support in malnourished patients with pancreatobiliary cancer: a quasi-experimental study

description: Additional file 2.
DOI: 10.6084/m9.figshare.20296191
title: Additional file 3 of Effect of preoperative nutritional support in malnourished patients with pancreatobiliary cancer: a quasi-experimental study

description: Additional file 3.
DOI: 10.6084/m9.figshare.20296182
title: Additional file 3 of Level of health literacy in Latvia and Lithuania: a population-based study

description: Additional file 3.
DOI: 10.6084/m9.figshare.20296191.v1
title: Additional file 3 of Effect of preoperative nutritional support in malnourished patients with pancreatobiliary cancer: a quasi-experimental study

description: Additional file 3.
DOI: 10.6084/m9.figshare.20296197
title: Additional file 1 of Pooled coverage of community based health insurance scheme enrolment in Ethiopia, systematic review and meta-analysis, 2016–2020

description: Additional file 1: Supplementary Table 1. Quality assessment for risk of bias among included studies on CBHI coverage, Ethiopia, 2016-2020.
DOI: 10.6084/m9.figshare.20296197.v1
title: Additional file 1 of Pooled coverage of community based health insurance scheme enrolment in Ethiopia, systematic review and meta-analysis, 2016–2020

description: Additional file 1: Supplementary Table 1. Quality assessment for risk of bias among included studies on CBHI coverage, Ethiopia, 2016-2020.
DOI: 10.6084/m9.figshare.20296203
title: Additional file 1 of Performance of the No-U-Turn sampler in multi-trait variance component estimation using genomic data

description: Additional file 1. RStan code for the NUTS algorithm with an LKJ prior of a multi-trait animal model. RStan is the R interface to Stan. The user writes the analysis model in the test.stan file and runs Stan by using test.stan in R. The user needs to input the following parameters: J, number of fixed effects; K, number of traits; Q, total number of animals; N, number of observations; X, design matrix for fixed effects; Z, design matrix for random effects; Y, response variable; and A, relationship matrix.
DOI: 10.6084/m9.figshare.20296203.v1
title: Additional file 1 of Performance of the No-U-Turn sampler in multi-trait variance component estimation using genomic data

description: Additional file 1. RStan code for the NUTS algorithm with an LKJ prior of a multi-trait animal model. RStan is the R interface to Stan. The user writes the analysis model in the test.stan file and runs Stan by using test.stan in R. The user needs to input the following parameters: J, number of fixed effects; K, number of traits; Q, total number of animals; N, number of observations; X, design matrix for fixed effects; Z, design matrix for random effects; Y, response variable; and A, relationship matrix.
DOI: 10.6084/m9.figshare.20296206
title: Additional file 2 of Performance of the No-U-Turn sampler in multi-trait variance component estimation using genomic data

description: Additional file 2. RStan code for the NUTS algorithm with an IW prior of a multi-trait animal model.
DOI: 10.6084/m9.figshare.20296206.v1
title: Additional file 2 of Performance of the No-U-Turn sampler in multi-trait variance component estimation using genomic data

description: Additional file 2. RStan code for the NUTS algorithm with an IW prior of a multi-trait animal model.
DOI: 10.6084/m9.figshare.20296297
title: Additional file 7 of Emergence dynamics of adult Culicoides biting midges at two farms in south-east England

description: Additional file 7: Data S1. Full data set of collected Culicoides including site, trap location, collection date and morphological identification
DOI: 10.6084/m9.figshare.20296297.v1
title: Additional file 7 of Emergence dynamics of adult Culicoides biting midges at two farms in south-east England

description: Additional file 7: Data S1. Full data set of collected Culicoides including site, trap location, collection date and morphological identification
DOI: 10.6084/m9.figshare.20296303
title: Additional file 2 of Online information on medical cannabis is not always aligned with scientific evidence and may raise unrealistic expectations

description: Additional file 2: Spreadsheet with raw data.
DOI: 10.6084/m9.figshare.20296303.v1
title: Additional file 2 of Online information on medical cannabis is not always aligned with scientific evidence and may raise unrealistic expectations

description: Additional file 2: Spreadsheet with raw data.
DOI: 10.6084/m9.figshare.20296333
title: Additional file 1 of Emergence of the invasive Asian bush mosquito Aedes (Hulecoeteomyia) japonicus (Theobald, 1901) in the Czech Republic

description: Additional file 1: Table S1. Microsatellite fragment lengths of Ae. japonicus populations studied (0: not analysable).
DOI: 10.6084/m9.figshare.20296333.v1
title: Additional file 1 of Emergence of the invasive Asian bush mosquito Aedes (Hulecoeteomyia) japonicus (Theobald, 1901) in the Czech Republic

description: Additional file 1: Table S1. Microsatellite fragment lengths of Ae. japonicus populations studied (0: not analysable).
DOI: 10.6084/m9.figshare.20296314
title: Additional file 14 of A systematic review and meta-analysis of blood interleukin-4 levels concerning malaria infection and severity

description: Additional file 14: Table S2. Details of the included studies
DOI: 10.6084/m9.figshare.20296314.v1
title: Additional file 14 of A systematic review and meta-analysis of blood interleukin-4 levels concerning malaria infection and severity

description: Additional file 14: Table S2. Details of the included studies
DOI: 10.6084/m9.figshare.20296419
title: Additional file 1 of The impact of subthreshold levels of amyloid deposition on conversion to dementia in patients with amyloid-negative amnestic mild cognitive impairment

description: Additional file 1: Table S1. The result of stepwise backward elimination. Figure S1. Flow chart for this study of ADNI dataset. The solid outline squares represent subjects that remained. The dash line squares represent excluded subjects. Abbreviations: MCI, Mild cognitive impairment. Figure S2. Correlation between regional SUVR and cortical thickness in the converter group. (A) SUVR of the right middle frontal cortex and medial aspect of the cerebrum; (B) SUVR of the left hippocampus and medial aspect of the cerebrum; (C) SUVR of the right striatum lateral aspect of the cerebrum; (D) SUVR of the left occipital cortex lateral aspect of the cerebrum; (E) Right FBB composite and medial aspect of the cerebrum; (F) Left FBB composite and medial aspect of the cerebrum; (G) Right FBB composite and lateral aspect of the brain; and (H) Left FBB composite and lateral aspect of the brain. FDR correction with p &lt; 0.05, and p value &lt; 0.001. There was no statistical correlation in the non-converter group; thus, only the converter group’s results are shown from (A) to (G). SUVR, standard uptake value ratio; FBB, florbetaben; FDR, false discovery rate.
DOI: 10.6084/m9.figshare.20296419.v1
title: Additional file 1 of The impact of subthreshold levels of amyloid deposition on conversion to dementia in patients with amyloid-negative amnestic mild cognitive impairment

description: Additional file 1: Table S1. The result of stepwise backward elimination. Figure S1. Flow chart for this study of ADNI dataset. The solid outline squares represent subjects that remained. The dash line squares represent excluded subjects. Abbreviations: MCI, Mild cognitive impairment. Figure S2. Correlation between regional SUVR and cortical thickness in the converter group. (A) SUVR of the right middle frontal cortex and medial aspect of the cerebrum; (B) SUVR of the left hippocampus and medial aspect of the cerebrum; (C) SUVR of the right striatum lateral aspect of the cerebrum; (D) SUVR of the left occipital cortex lateral aspect of the cerebrum; (E) Right FBB composite and medial aspect of the cerebrum; (F) Left FBB composite and medial aspect of the cerebrum; (G) Right FBB composite and lateral aspect of the brain; and (H) Left FBB composite and lateral aspect of the brain. FDR correction with p &lt; 0.05, and p value &lt; 0.001. There was no statistical correlation in the non-converter group; thus, only the converter group’s results are shown from (A) to (G). SUVR, standard uptake value ratio; FBB, florbetaben; FDR, false discovery rate.
DOI: 10.6084/m9.figshare.20296422
title: Additional file 2 of The impact of subthreshold levels of amyloid deposition on conversion to dementia in patients with amyloid-negative amnestic mild cognitive impairment

description: Additional file 2: Table S2. The results of Z-test (comparison of correlation coefficient) between the two group.
DOI: 10.6084/m9.figshare.20296422.v1
title: Additional file 2 of The impact of subthreshold levels of amyloid deposition on conversion to dementia in patients with amyloid-negative amnestic mild cognitive impairment

description: Additional file 2: Table S2. The results of Z-test (comparison of correlation coefficient) between the two group.
DOI: 10.6084/m9.figshare.20296425
title: Additional file 3 of The impact of subthreshold levels of amyloid deposition on conversion to dementia in patients with amyloid-negative amnestic mild cognitive impairment

description: Additional file 3.
DOI: 10.6084/m9.figshare.20296425.v1
title: Additional file 3 of The impact of subthreshold levels of amyloid deposition on conversion to dementia in patients with amyloid-negative amnestic mild cognitive impairment

description: Additional file 3.
DOI: 10.6084/m9.figshare.20296504
title: Additional file 1 of Barthel Index is a valid and reliable tool to measure the functional independence of cancer patients in palliative care

description: Additional file 1.
DOI: 10.6084/m9.figshare.20296504.v1
title: Additional file 1 of Barthel Index is a valid and reliable tool to measure the functional independence of cancer patients in palliative care

description: Additional file 1.
DOI: 10.6084/m9.figshare.20296507
title: Additional file 2 of Barthel Index is a valid and reliable tool to measure the functional independence of cancer patients in palliative care

description: Additional file 2.
DOI: 10.6084/m9.figshare.20296507.v1
title: Additional file 2 of Barthel Index is a valid and reliable tool to measure the functional independence of cancer patients in palliative care

description: Additional file 2.
DOI: 10.6084/m9.figshare.20296510
title: Additional file 1 of Runs of homozygosity in Sable Island feral horses reveal the genomic consequences of inbreeding and divergence from domestic breeds

description: Additional file 1. Excel spreadsheet containing a table too wide for A4. Mean per-chromosome ROH-based inbreeding coefficients (FROH) by horse population. Average inbreeding coefficients derived by dividing the length of each chromosome present within ROH by the total length of the corresponding chromosome for individuals from 33 domestic horse breeds and Sable Island feral horses.
DOI: 10.6084/m9.figshare.20296510.v1
title: Additional file 1 of Runs of homozygosity in Sable Island feral horses reveal the genomic consequences of inbreeding and divergence from domestic breeds

description: Additional file 1. Excel spreadsheet containing a table too wide for A4. Mean per-chromosome ROH-based inbreeding coefficients (FROH) by horse population. Average inbreeding coefficients derived by dividing the length of each chromosome present within ROH by the total length of the corresponding chromosome for individuals from 33 domestic horse breeds and Sable Island feral horses.
DOI: 10.6084/m9.figshare.20296521
title: Additional file 1 of Associated factors of doctor visits made by urban-dwelling older adults in Sri Lanka: an application of Anderson’s model of health service utilization

description: Additional file 1: Supplementary Data File. Doctor visits of older Sri Lankans.
DOI: 10.6084/m9.figshare.20296521.v1
title: Additional file 1 of Associated factors of doctor visits made by urban-dwelling older adults in Sri Lanka: an application of Anderson’s model of health service utilization

description: Additional file 1: Supplementary Data File. Doctor visits of older Sri Lankans.
DOI: 10.6084/m9.figshare.20296530
title: Additional file 2 of Blumea chishangensis sp. nov. (Asteraceae: Inuleae) from Taiwan and new insights into the phylogeny of Blumea

description: Additional file 2: Alignments and trees of the phylogeny of genus Blumea.
DOI: 10.6084/m9.figshare.20296530.v1
title: Additional file 2 of Blumea chishangensis sp. nov. (Asteraceae: Inuleae) from Taiwan and new insights into the phylogeny of Blumea

description: Additional file 2: Alignments and trees of the phylogeny of genus Blumea.
DOI: 10.6084/m9.figshare.20296536
title: Additional file 2 of Effects of furosemide and tadalafil in both conventional and nanoforms against adenine-induced chronic renal failure in rats

description: Additional file 2: Prism file statistics for raw data.
DOI: 10.6084/m9.figshare.20296536.v1
title: Additional file 2 of Effects of furosemide and tadalafil in both conventional and nanoforms against adenine-induced chronic renal failure in rats

description: Additional file 2: Prism file statistics for raw data.
DOI: 10.6084/m9.figshare.19746436.v1
title: Additional file 10 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 10: Table S9. List of significant differentially expressed genes from T-cells.
DOI: 10.6084/m9.figshare.19746439
title: Additional file 11 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 11: Table S10. Continuous subtype scoring across cell type (GSE39582 [45], GSE17536 [48]).
DOI: 10.6084/m9.figshare.19746439.v1
title: Additional file 11 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 11: Table S10. Continuous subtype scoring across cell type (GSE39582 [45], GSE17536 [48]).
DOI: 10.6084/m9.figshare.19746442
title: Additional file 12 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 12: Table S11. List of proportional hazard assumption ratio for survival from the samples in GSE17536 [45] and GSE39582 [48.
DOI: 10.6084/m9.figshare.19746445
title: Additional file 13 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 13: Table S12. Multivariate-Cox regression analysis.
DOI: 10.6084/m9.figshare.19746436
title: Additional file 10 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 10: Table S9. List of significant differentially expressed genes from T-cells.
DOI: 10.6084/m9.figshare.19746442.v1
title: Additional file 12 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 12: Table S11. List of proportional hazard assumption ratio for survival from the samples in GSE17536 [45] and GSE39582 [48.
DOI: 10.6084/m9.figshare.19746445.v1
title: Additional file 13 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 13: Table S12. Multivariate-Cox regression analysis.
DOI: 10.6084/m9.figshare.19746448
title: Additional file 14 of Refining colorectal cancer classification and clinical stratification through a single-cell atlas

description: Additional file 14: Table S13. Pathway analysis on the customized collection of 51 CRC-related gene sets.