cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zqrymz
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Solanum scabrum Mill.",
 "Year 1950-2023"
 ]
}

 The dataset includes 34 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239480-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sa9vsm
title: Occurrence Download

description: A dataset containing 436 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dasispermum suffruticosum (Bergius) B.L.Burtt"
 ]
}

 The dataset includes 436 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242123-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfw8nz
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "TaxonKey is Lacerta agilis Linnaeus, 1758",
 "Year 1970-2000"
 ]
}

 The dataset includes 228 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011086-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58txny
title: Occurrence Download

description: A dataset containing 441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Elaeis guineensis Jacq.",
 "Year 2023-2023"
 ]
}

 The dataset includes 441 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069409-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cx6vdf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mapania nudispica T.Koyama"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019256-230530130749713/datasets/export for details.
DOI: 10.15468/dl.6n8v9s
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Larix mastersiana Rehd. & E.H.Wilson"
 ]
}

 The dataset includes 100 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030810-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.927xnc
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maranta lietzei hort. ex Petersen, 1890"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019332-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtw3sf
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ailuropoda melanoleuca (David, 1869)"
 ]
}

 The dataset includes 29 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240256-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrzac7
title: Occurrence Download

description: A dataset containing 8969 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tremarctos ornatus (F.G.Cuvier, 1825)"
 ]
}

 The dataset includes 8969 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239482-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6rqb84
title: Occurrence Download

description: A dataset containing 7715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Campylorhynchus Spix, 1824"
 ]
}

 The dataset includes 7715 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029790-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qr6jcz
title: Occurrence Download

description: A dataset containing 2487 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodanthe moschata (A.Cunn. ex DC.) Paul G.Wilson"
 ]
}

 The dataset includes 2487 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240225-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddacsw
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rapicactus subterraneus (Backeb.) Buxb. & Oehme"
 ]
}

 The dataset includes 46 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239496-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3zgxy
title: Occurrence Download

description: A dataset containing 270 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heterostachys ritteriana (Moq.) Ung.-Sternb."
 ]
}

 The dataset includes 270 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242151-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkukvm
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodanthe condensata (F.Muell.) Paul G.Wilson"
 ]
}

 The dataset includes 63 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240206-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.755jep
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "DecimalLatitude is greater than or equal to 31.5523570845966",
 "DecimalLatitude is less than or equal to 31.567740179294",
 "DecimalLongitude is greater than or equal to 35.4801527995044",
 "DecimalLongitude is less than or equal to 35.498118659472",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242153-230224095556074/datasets/export for details.
DOI: 10.15468/dl.3y3ckh
title: Occurrence Download

description: A dataset containing 727 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helicodiceros muscivorus (L.f.) Engl."
 ]
}

 The dataset includes 727 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239483-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2yf8gv
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodanthe corymbosa (A.Gray) Paul G.Wilson"
 ]
}

 The dataset includes 150 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240208-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gsfqdw
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heterostemma menghaiense (H.Zhu & H.Wang) M.G.Gilbert & P.T.Li"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242161-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4p5n2y
title: Occurrence Download

description: A dataset containing 982 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliconia angusta Vell."
 ]
}

 The dataset includes 982 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239500-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.py3d8z
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crotalaria agatiflora subsp. erlangeri Baker f.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069410-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2j3t9
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syncarpha dregeana (DC.) B.Nord."
 ]
}

 The dataset includes 81 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240210-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wywfsv
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heterostemma brownii Hayata"
 ]
}

 The dataset includes 234 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242154-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3eak77
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodanthe polycephala (A.Gray) Paul G.Wilson"
 ]
}

 The dataset includes 217 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240226-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfk77c
title: Occurrence Download

description: A dataset containing 1886 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliconia acuminata A.Rich."
 ]
}

 The dataset includes 1886 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239485-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mwbvb
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Lebanon",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lathyrus L."
 ]
}

 The dataset includes 81 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242155-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdvrfq
title: Occurrence Download

description: A dataset containing 88027 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trifolium fragiferum L."
 ]
}

 The dataset includes 88027 records from 859 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010335-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive107909.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive107910.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0099706.10fu
title: SH0099706.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive107910.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive107911.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0099707.10fu
title: SH0099707.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive107911.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0099708.10fu
title: SH0099708.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive107912.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive107912.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0099709.10fu
title: SH0099709.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.17260043
title: High-resolution H&E images from the HistoSweep study across multiple tissues and diseases

description: This dataset contains eleven high-resolution hematoxylin and eosin (H&E) stained tissue images used in the study HistoSweep enables cellular-resolution tissue quality control for gigapixel images in digital pathology and spatial omics. The images have been pre-processed by scaling and padding to ensure consistency across samples and compatibility with digital pathology workflows.

Contents





Lung atypical adenomatous hyperplasia (AAH) and lung adenocarcinoma samples (contributed by H. Kadara laboratory):



Lung_AAH.zip (1 H&E slide)



Lung_AD.zip (3 H&E slides)






Atherosclerosis (contributed by L. Maegdefessel laboratory):





(1) Post Xenium profiling, (2) post CODEX profiling, (3) multi-sample tissue post CODEX profiling


Artery_Atherosclerosis.zip (3 H&E slides)





Lymph node from melanoma patient (contributed by A. Huang laboratory)



LymphNode_Melanoma.zip (1 H&E slide)





Kidney with renal cell carcinoma (RCC) (contributed by A. Huang laboratory)



Kidney_RCC.zip (1 H&E slide)





Kidney tissues processed with CosMx (contributed by K. Susztak laboratory):





(1) One image containing two normal kidney samples, (2) One image containing a normal and a type 2 diabetes (T2D) kidney sample


Kidney_MultiSample_T2D.zip (2 H&E slides)




PurposeThese images provide a diverse set of gigapixel H&E slides spanning multiple tissue types and disease contexts. They serve as a resource for reproducing, validating, and extending the analyses performed with HistoSweep, as well as for general use in histopathology and spatial omics research.
DOI: 10.5281/zenodo.18165537
title: High-resolution H&E images from the HistoSweep study across multiple tissues and diseases

description: This dataset contains eleven high-resolution hematoxylin and eosin (H&E) stained tissue images used in the study HistoSweep enables cellular-resolution tissue quality control for gigapixel images in digital pathology and spatial omics. The images have been pre-processed by scaling and padding to ensure consistency across samples and compatibility with digital pathology workflows.

Contents





Lung atypical adenomatous hyperplasia (AAH) and lung adenocarcinoma samples (contributed by H. Kadara laboratory):



Lung_AAH.zip (1 H&E slide)



Lung_AD.zip (3 H&E slides)






Atherosclerosis (contributed by L. Maegdefessel laboratory):





(1) Post Xenium profiling, (2) post CODEX profiling, (3) multi-sample tissue post CODEX profiling


Artery_Atherosclerosis.zip (3 H&E slides)





Lymph node from melanoma patient (contributed by A. Huang laboratory)



LymphNode_Melanoma.zip (1 H&E slide)





Kidney with renal cell carcinoma (RCC) (contributed by A. Huang laboratory)



Kidney_RCC.zip (1 H&E slide)





Kidney tissues processed with CosMx (contributed by K. Susztak laboratory):





(1) One image containing two normal kidney samples, (2) One image containing a normal and a type 2 diabetes (T2D) kidney sample


Kidney_MultiSample_T2D.zip (2 H&E slides)




PurposeThese images provide a diverse set of gigapixel H&E slides spanning multiple tissue types and disease contexts. They serve as a resource for reproducing, validating, and extending the analyses performed with HistoSweep, as well as for general use in histopathology and spatial omics research.
DOI: 10.13145/bacdive107913.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive107913.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.