cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.497sg
title: Data from: Taming the wild: resolving the gene pools of non-model Arabidopsis lineages

description: Background: Wild relatives in the genus Arabidopsis are recognized as
 useful model systems to study traits and evolutionary processes in
 outcrossing species, which are often difficult or even impossible to
 investigate in the selfing and annual Arabidopsis thaliana. However,
 Arabidopsis as a genus is littered with sub-species and ecotypes which
 make realizing the potential of these non-model Arabidopsis lineages
 problematic. There are relatively few evolutionary studies which
 comprehensively characterize the gene pools across all of the Arabidopsis
 supra-groups and hypothesized evolutionary lineages and none include
 sampling at a world-wide scale. Here we explore the gene pools of these
 various taxa using various molecular markers and cytological analyses.
 Results: Based on ITS, microsatellite, chloroplast and nuclear DNA content
 data we demonstrate the presence of three major evolutionary groups
 broadly characterized as A. lyrata group, A. halleri group and A. arenosa
 group. All are composed of further species and sub-species forming larger
 aggregates. Depending on the resolution of the marker, a few closely
 related taxa such as A. pedemontana, A. cebennensis and A. croatica are
 also clearly distinct evolutionary lineages. ITS sequences and a
 population-based screen based on microsatellites were highly concordant.
 The major gene pools identified by ITS sequences were also significantly
 differentiated by their homoploid nuclear DNA content estimated by flow
 cytometry. The chloroplast genome provided less resolution than the
 nuclear data, and it remains unclear whether the extensive haplotype
 sharing apparent between taxa results from gene flow or incomplete lineage
 sorting in this relatively young group of species with Pleistocene
 origins. Conclusions: Our study provides a comprehensive overview of the
 genetic variation within and among the various taxa of the genus
 Arabidopsis. The resolved gene pools and evolutionary lineages will set
 the framework for future comparative studies on genetic diversity.
 Extensive population-based phylogeographic studies will also be required,
 however, in particular for A. arenosa and their affiliated taxa and
 cytotypes.
description: Accession
 dataAccession list with
 detailed information on origin, DNA data, cytogenetic data and inferences
 and haplotype definitionsAdditional_File_5_Accessiontable_genomesizesFINAL.xlsxITS alignmentAlignment of Arabidopsis ITS types.Additional_File_1_Alignment_ITS.txtChloroplast trnLF alignmentAlignment of the trnL-trnLF region and respective suprahaplotypes.Additional_File_2_Alignment_trnLF.txtArabidopsis Microsatellite dataMicrosatellite input data (STRUCTURE) set for seven loci. Accession codes refer to the respective accession list. Missing data "-9". In the second row numbers 1-23 indicates taxa (taxon identifyer as used in accession list)Additional_File_6_Microsatellites.txt
DOI: 10.82294/dvnfao1u3
title: COPUS. Territorio: Cundinamarca. Sector: Cultural. Año: 2025
title: Dato. Observación estructurada con el protocolo COPUS.

description: Información recopilada durante el año 2024 a partir de observaciones estructuradas realizadas con el protocolo COPUS, dirigidas a educadores artísticos pertenecientes a programas de formación en educación artística y cultural del sector Cultura (educación informal) en el departamento de Cundinamarca.
DOI: 10.5061/dryad.m2v21
title: Data from: Barriers, rather than refugia, underlie the origin of diversity in toads endemic to the Brazilian Atlantic Forest

description: In this study, we investigated the relative contribution of geographic
 barriers and Pleistocene refuges in the diversification of the Rhinella
 crucifer species complex, a group of endemic toads with a widespread
 distribution in the Brazilian Atlantic Forest (AF). We used intensive
 sampling and multilocus DNA sequence data to compare nucleotide diversity
 between refuge and nonrefuge areas, investigate regional demographic
 patterns, estimate demographic parameters related to genetic breaks and
 test refuge versus barrier scenarios of diversification using approximate
 Bayesian computation. We did not find higher levels of genetic diversity
 in putative refuge areas, either at regional or biome scale. Rather, the
 demographic history of the species complex supports regional differences
 with moderate population growth in the north and central regions and
 stability in southern AF. Genetic breaks were dated to the
 Plio–Pleistocene; however, our analyses rejected the role of refuges in
 creating a northern and central divergence, supporting a recent
 colonization scenario at a smaller scale within the central AF. Overall,
 our data rule out massive climatically driven fragmentation and
 large-scale recolonization events for populations across the biome. We
 confirmed the importance of geographic barriers in creating main
 divergences and underscored the importance of searching for cryptic
 discontinuities in the landscape. Comparison of our results with those of
 other AF taxa indicates organismal specific responses to moderate shifts
 in habitat and that multiple refuges may constitute a more realistic model
 for diversification of Atlantic Forest biota.
description: tableS1Voucher numbers, locality, coordinates, region, and genbank assession numbers for individuals used in this studyND2alignment for the NADH dehydrogenase subunit 2 fragmentcrystallinalignment for the beta-crystallin fragmentalphapolypeptidealignment for the intron 1 of the A alpha polypeptide fragmentABC_NxCperl script for the ABC analysis with regions N and CABCwithinCperl script for the ABC analysis within region C
DOI: 10.5061/dryad.33mh2
title: Data from: Fire evolution in the radioactive forests of Ukraine and Belarus: future risks for the population and the environment

description: This paper analyzes the current and future status of forests in Ukraine
 and Belarus that were contaminated after the nuclear disaster in 1986.
 Using several models, together with remote sensing data and observations,
 we studied how climate change in these forests may affect fire regimes. We
 investigated the possibility of 137Cs displacement over Europe by studying
 previous fire events, and examined three fire scenarios that depended on
 different emission altitudes of 137Cs, assuming that 10% of the forests
 were affected by fires. Field measurements and modeling simulations
 confirmed that numerous radioactive contaminants are still present at
 these sites in extremely large quantities. Forests in Eastern Europe are
 characterized by large, highly fire-prone patches that are conducive to
 the development of extreme crown fires. Since 1986, there has been a
 positive correlation between extreme fire events and drought in the two
 contaminated regions. Litter carbon storage in the area has doubled since
 1986 due to increased tree mortality and decreased decomposition rates;
 dead trees and accumulating litter in turn can provide fuel for wildfires
 that pose a high risk of redistributing radioactivity in future years.
 Intense fires in 2002, 2008 and 2010 resulted in the displacement of 137Cs
 to the south; the cumulative amount of 137Cs re-deposited over Europe was
 equivalent to 8% of that deposited following the initial Chernobyl
 disaster. However, a large amount of 137Cs still remains in these forests,
 which could be remobilized along with a large number of other dangerous,
 long-lived, refractory radionuclides. We predict that an expanding
 flammable area associated with climate change will lead to a high risk of
 radioactive contamination with characteristic fire peaks in the future.
 Current fire-fighting infrastructure in the region is inadequate due to
 understaffing and lack of funding. Our data yield the first cogent
 predictions for future fire incidents and provide scientific insights that
 could inform and spur evidence-based policy decisions concerning highly
 contaminated regions around the world, such as those of Chernobyl.
description: Appendix
 A2.Supplemental_Material.docx
DOI: 10.5878/xe0a-zz84
title: The Gothenburg SOM Survey 2022
title: SOM-undersökningen i Göteborg 2022

description: In the autumn of 2022, the seventh edition of the Gothenburg SOM Survey was conducted. A total of 9,000 randomly selected citizens of Gothenburg answered questions about attitudes and habits in relation to society, opinion and media. Many of the questions in the Gothenburg survey are of a regional nature, and concern local politicians and infrastructure initiatives.
description: Hösten 2022 genomfördes för sjunde gången en SOM-undersökning i Göteborgs stad, där totalt 9 000 slumpmässigt utvalda göteborgare fick svara på frågor om attityder och vanor i relation till samhälle, opinion och medier. Många av frågorna i Göteborgsundersökningen är av regional karaktär och rör lokala politiker, infrastruktursatsningar, och bilden av Göteborg som stad.
DOI: 10.5878/4dtj-1511
title: The Gothenburg SOM Survey 2022
title: SOM-undersökningen i Göteborg 2022

description: In the autumn of 2022, the seventh edition of the Gothenburg SOM Survey was conducted. A total of 9,000 randomly selected citizens of Gothenburg answered questions about attitudes and habits in relation to society, opinion and media. Many of the questions in the Gothenburg survey are of a regional nature, and concern local politicians and infrastructure initiatives.
description: Hösten 2022 genomfördes för sjunde gången en SOM-undersökning i Göteborgs stad, där totalt 9 000 slumpmässigt utvalda göteborgare fick svara på frågor om attityder och vanor i relation till samhälle, opinion och medier. Många av frågorna i Göteborgsundersökningen är av regional karaktär och rör lokala politiker, infrastruktursatsningar, och bilden av Göteborg som stad.
DOI: 10.5061/dryad.rp8d0
title: Data from: Use of RAD sequencing for delimiting species

description: RAD-tag sequencing is a promising method for conducting genome-wide
 evolutionary studies. However, to date, only a handful of studies
 empirically tested its applicability above the species level. In this
 communication, we use RAD tags to contribute to the delimitation of
 species within a diverse genus of deep-sea octocorals, Chrysogorgia, for
 which few classical genetic markers have proved informative. Previous
 studies have hypothesized that single mitochondrial haplotypes can be used
 to delimit Chrysogorgia species. On the basis of two lanes of Illumina
 sequencing, we inferred phylogenetic relationships among 12 putative
 species that were delimited using mitochondrial data, comparing two RAD
 analysis pipelines (Stacks and PyRAD). The number of homologous RAD loci
 decreased dramatically with increasing divergence, as &gt;70% of loci
 are lost when comparing specimens separated by two mutations on the 700-nt
 long mitochondrial phylogeny. Species delimitation hypotheses based on the
 mitochondrial mtMutS gene are largely supported, as six out of nine
 putative species represented by more than one colony were recovered as
 discrete, well-supported clades. Significant genetic structure
 (correlating with geography) was detected within one putative species,
 suggesting that individuals characterized by the same mtMutS haplotype may
 belong to distinct species. Conversely, three mtMutS haplotypes formed one
 well-supported clade within which no population structure was detected,
 also suggesting that intraspecific variation exists at mtMutS in
 Chrysogorgia. Despite an impressive decrease in the number of homologous
 loci across clades, RAD data helped us to fine-tune our interpretations of
 classical mitochondrial markers used in octocoral species delimitation,
 and discover previously undetected diversity.
description: Data from "Use of
 RAD sequencing for delimiting species"This compressed folder
 contains three subfolders with data from the study "Use of RAD
 sequencing for delimiting species" by Pante et al. accepted for
 publication in the journal Heredity. Details are listed in the file named
 "README_Pante_etal_2014_Heredity.txt"Pante_etal_Heredity_2014_DRYAD.zip
DOI: 10.5061/dryad.4129d
title: Data from: Silent katydid females are at higher risk of bat predation than acoustically signalling katydid males

description: Males that produce conspicuous mate attraction signals are often at high
 risk of predation from eavesdropping predators. Females of such species
 typically search for signalling males and their higher motility may also
 place them at risk. The relative predation risk faced by males and females
 in the context of mate-finding using long-distance signals has rarely been
 investigated. In this study, we show, using a combination of diet analysis
 and behavioural experiments, that katydid females, who do not produce
 acoustic signals, are at higher risk of predation from a major bat
 predator, Megaderma spasma, than calling males. Female katydids were
 represented in much higher numbers than males in the culled remains
 beneath roosts of M. spasma. Playback experiments using katydid calls
 revealed that male calls were approached in only about one-third of the
 trials overall, whereas tethered, flying katydids were always approached
 and attacked. Our results question the idea that necessary costs of
 mate-finding, including risk of predation, are higher in signalling males
 than in searching females.
description: Culled_remains_data_M_spasmaThis contains the counts of individual fragments of culled remains collected beneath roosts of Megaderma spasmaFlight_initiation_attempts_playback_exptThis file contains the raw data on the number of successful and unsuccessful attempts to initiate katydid flight in the behavioural experiment with Megaderma spasmaBrochopeplus_call_playback_07052010_b2Video showing response of Megaderma spasma to playback of Brochopeplus species callOnomarchus_call_playback_05052010_b1Video showing response of Megaderma spasma to the playback of the call of Onomarchus uninotatusMecopoda__Flight_09052010_b1Video showing response of Megaderma spasma to a flying MecopodaBat15_Flight_experimental trialVideo showing controls for insect flight and final response
DOI: 10.15468/v62wea
title: Two new species of Edwardsiana Zachvatkin (Hemiptera: Auchenorrhyncha: Cicadellidae: Typhlocybinae) and an additional newly recorded species from the Korean Peninsula

description: This dataset contains the digitized treatments in Plazi based on the original journal article Oh, Sumin, Kim, Il-Kwon, Jung, Sunghoon (2025): Two new species of Edwardsiana Zachvatkin (Hemiptera: Auchenorrhyncha: Cicadellidae: Typhlocybinae) and an additional newly recorded species from the Korean Peninsula. Zootaxa 5722 (4): 583-590, DOI: 10.11646/zootaxa.5722.4.8, URL: https://doi.org/10.11646/zootaxa.5722.4.8AbstractTwo new species of the genus Edwardsiana Zachvatkin, E. curvata sp. nov. E. directa sp. nov., and one newly recorded species, E. ishidai (Matsumura, 1932) are described from the Korean Peninsula, and we provide a key to the Korean species.
DOI: 10.5061/dryad.5p7s0
title: Data from: Population genomic analyses of early phase Atlantic salmon (Salmo salar) domestication/captive breeding.

description: Domestication can have adverse genetic consequences, which may reduce the
 fitness of individuals once released back into the wild. Many wild
 Atlantic salmon (Salmo salar L.) populations are threatened by
 anthropogenic influences and they are supplemented with captively bred
 fish. The Atlantic salmon is also widely used in selective breeding
 programs to increase the mean trait values for desired phenotypic traits.
 We analyzed a genome-wide set of SNPs in three domesticated Atlantic
 salmon strains and their wild conspecifics to identify loci underlying
 domestication. The genetic differentiation between domesticated strains
 and wild populations was low (FST &lt; 0.03), and domesticated strains
 harbored similar levels of genetic diversity compared to their wild
 conspecifics. Only a few loci showed footprints of selection, and these
 loci were located in different linkage groups among the different wild
 population/hatchery strain comparisons. Simulated scenarios indicated that
 differentiation in quantitative trait loci exceeded that in neutral
 markers during the early phases of divergence only when the difference in
 the phenotypic optimum between populations was large. This study indicates
 that detecting selection using standard approaches in the early phases of
 domestication might be challenging unless selection is strong and the
 traits under selection show simple inheritance patterns.
description: Saint_John_Genotype_dataFile contains SNP genotypes for the River Saint John Atlantic salmon strain and their wild conspecifics.River Burrishoole Genotype_dataFile contains SNP genotype data for River Burrishoole Atlantic salmon strain and their wild conspecifics.Vindel Genotype_dataFile contains SNP genotype data for River Vindel/Ume Atlantic salmon strain and and their wild conspecifics.
DOI: 10.5061/dryad.5n5h6
title: Data from: Extensive transcriptional response associated with seasonal plasticity of butterfly wing patterns

description: In the eastern United States the buckeye butterfly, Junonia coenia, shows
 seasonal wing color plasticity where adults emerging in the spring are
 tan, while those emerging in the autumn are dark red. This variation can
 be artificially induced in laboratory colonies, thus making J. coenia a
 useful model system to examine the mechanistic basis of plasticity. To
 better understand the developmental basis of seasonal plasticity we used
 RNA-seq to quantify transcription profiles associated with development of
 alternative seasonal wing morphs. Depending on the developmental stage,
 between 547 and 1420 transfrags were significantly differentially
 expressed between morphs. These extensive differences in gene expression
 stand in contrast to the much smaller numbers of differentially expressed
 transcripts identified in previous studies of genetic wing pattern
 variation in other species, and suggest that environmentally induced
 phenotypic shifts arise from very broad systemic processes. Analyses of
 candidate endocrine and pigmentation transcripts revealed notable genes
 upregulated in the red morph, including several ecdysone-associated genes,
 and cinnabar, a pigmentation gene implicated in color pattern variation in
 other butterflies. We also found multiple melanin-related transcripts
 strongly upregulated in the red morph, including tan and yellow-family
 genes, leading us to speculate that dark red pigmentation in autumn J.
 coenia may involve non-ommochrome pigments. While we identified several
 endocrine and pigmentation genes as obvious candidates for seasonal color
 morph differentiation, we speculate that the majority of observed
 expression differences were due to thermal stress response. The buckeye
 transcriptome provides a basis for further developmental studies of
 phenotypic plasticity.
description: Junonia coenia wing
 transcriptomeAssembled polyA mRNA-seq
 transcript fragments from Junonia coenia hindwings. Transcripts are from
 two polyphenic morphs (tan and red) across four developmental stages (late
 5th instar, early pupa, ommochrome-stage pupa, early melanin-stage
 pupa).JC.transcriptome.fa
DOI: 10.5281/zenodo.18390876
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Manfred Heinrich Kuhbier, http://www.wikidata.org/entity/Q20016292. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q20016292
DOI: 10.5061/dryad.8t4gp
title: Data from: Phylogeny, classification, and fruit evolution of the species-rich Neotropical bellflowers (Campanulaceae: Lobelioideae)

description: Premise of the study: The species-rich Neotropical genera Centropogon,
 Burmeistera, and Siphocampylus represent more than half of the ∼1200
 species in the subfamily Lobelioideae (Campanulaceae). They exhibit
 remarkable morphological variation in floral morphology and habit. Limited
 taxon sampling and phylogenetic resolution, however, obscures our
 understanding of relationships between and within these genera and
 underscores our uncertainty of the systematic value of fruit type as a
 major diagnostic character. Methods: We inferred a phylogeny from five
 plastid DNA regions (rpl32-trnL, ndhF-rpl32, rps16-trnK, trnG-trnG-trns,
 rbcL) using maximum-likelihood and Bayesian inference. Ancestral character
 reconstructions were applied to infer patterns of fruit evolution. Key
 results: Our results demonstrate that the majority of species in the
 genera Centropogon, Burmeistera, and Siphocampylus together form a
 primarily mainland Neotropical clade, collectively termed the
 “centropogonids.” Caribbean Siphocampylus, however, group with other
 Caribbean lobelioid species. We find high support for the monophyly of
 Burmeistera and the polyphyly of Centropogon and mainland Siphocampylus.
 The ancestral fruit type of the centropogonids is a capsule; berries have
 evolved independently multiple times. Conclusions: Our plastid phylogeny
 greatly improves the phylogenetic resolution within Neotropical
 Lobelioideae and highlights the need for taxonomic revisions in the
 subfamily. Inference of ancestral character states identifies a dynamic
 pattern of fruit evolution within the centropogonids, emphasizing the
 difficulty of diagnosing broad taxonomic groups on the basis of fruit
 type. Finally, we identify that the centropogonids, Lysipomia, and Lobelia
 section Tupa form a Pan-Andean radiation with broad habitat diversity.
 This clade is a prime candidate for investigations of Neotropical
 biogeography and morphological evolution.
description: Sequence alignment
 (MrBayes)Nexus-formatted sequence
 alignment for five locus + gap plastid phylogenetic analysis of
 Neotropical Lobelioideae (includes MrBayes block)alltaxa_allmarkers_gaps.phySequence alignment (RAxML)Phylip-formatted sequence alignment for 5-locus + gap maximum likelihood phylogenetic analysis of the Neotropical Lobelioideae (RAxML)alltaxa_allmarkers_gaps.phyPartition file (RAxML)Partition file for Sequence Alignment (RAxML)raxml_partSequence alignment (PhyloBayes)Phylip-formatted sequence alignment for 5-marker plastid phylogenetic analysis of Neotropical Lobelioideae in PhyloBayes (no gap data)phylobayes.phy
DOI: 10.5281/zenodo.18390875
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Manfred Heinrich Kuhbier, http://www.wikidata.org/entity/Q20016292. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q20016292