cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24271321.v1
title: Supplementary Material for: Two distinct characteristics of immune microenvironment in human hepatocellular carcinoma with Wnt/β-catenin mutations

description: Introduction Immunotherapy is becoming a promising approach for unresectable-hepatocellular carcinoma (HCC); the anti-tumor response is affected by the tumor microenvironment (TME). Although Wnt/β-catenin mutations are reported to cause non-inflamed phenotype, their role on TME remains controversial. We aimed to clarify the heterogeneity of immunophenotype in HCC with Wnt/β-catenin mutations. Methods This study includes 152 resected HCCs; mutations in the catenin beta-1, adenomatous polyposis coli, or AXIN1, or AXIN2 genes were defined as Wnt/β-catenin mutations. With hierarchical cluster analyses, TME were classified into inflamed or non-inflamed classes based on the gene expressions associated with T-cell activation. Expression profiles of molecules related to cell differentiation and biliary-stem cell markers were compared between the TME classes to investigate whether differences in tumor traits were associated with TME. Results Forty of 152 (26.3%) HCCs carried the Wnt/β-catenin mutations. Of these, 33 were classified as non-inflamed (33/40, 82.5%) and 7 as inflamed (7/40, 17.5%). Non-inflamed class was characterized by low number of CD3+, CD4+, and CD8+ cells on immunostaining, and high mRNA expressions of AXIN2 and GLUL, which are involved in the canonical Wnt/β-catenin signaling and hepatocyte differentiation, respectively. Non-inflamed tumors showed higher enhancement on the hepatobiliary-phase of gadolinium-ethoxybenzyl-diethylenetriamine (Gd-EOB-DTPA)-enhanced magnetic resonance imaging (MRI) compared to inflamed tumors. HCCs classified as inflamed class are revealed to have high numbers of CD3+, CD4+, and CD8+ tumor infiltrating lymphocytes on immunostaining. This class is associated with increased expression of anti-epithelial cell adhesion molecule (EpCAM) and FOXM1 accompanied by upregulation of genes related to interferon-gamma signaling, dendritic cell migration, regulatory T cells and MDSC activation and recognized as low enhancement nodule on Gd-EOB-DTPA-enhanced MRI. Conclusion Heterogeneity of tumor traits and TME was observed in HCC with Wnt/β-catenin mutation. The potential was indicated that tumor traits and TME are determined not only by the activation of the HNF4A but also by FOXM1, both of which are downstream transcription factor of the Wnt/β-catenin signaling pathway.
DOI: 10.5281/zenodo.8421040
title: References and Climatic data of the different study sites of the Moroccan Mountains

description: This Dataset present the Precipitation and Temperature of different study sites and the references used in the article: "Pollen indices of C. atlantica M. populations vary with climatic changes in the Moroccan Mountains"
DOI: 10.5281/zenodo.8421039
title: References and Climatic data of the different study sites of the Moroccan Mountains

description: This Dataset present the Precipitation and Temperature of different study sites and the references used in the article: "Pollen indices of C. atlantica M. populations vary with climatic changes in the Moroccan Mountains"
DOI: 10.5517/ccdc.csd.cc7y9t8
title: CCDC 236710: Experimental Crystal Structure Determination

description: Related Article: M.Sebastian,A.Kolomeitsev,M.Nieger,W.W.Schoeller,E.Niecke|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc7y9s7
title: CCDC 236709: Experimental Crystal Structure Determination

description: Related Article: M.Sebastian,A.Kolomeitsev,M.Nieger,W.W.Schoeller,E.Niecke|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc88qqy
title: CCDC 246720: Experimental Crystal Structure Determination

description: Related Article: M.Sebastian,A.Hoskin,O.Schmidt,M.Nieger,L.Nyulaszi,E.Niecke|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc88qrz
title: CCDC 246721: Experimental Crystal Structure Determination

description: Related Article: M.Sebastian,A.Hoskin,O.Schmidt,M.Nieger,L.Nyulaszi,E.Niecke|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc8c8vq
title: CCDC 249173: Experimental Crystal Structure Determination

description: Related Article: M.Sebastian,A.Hoskin,O.Schmidt,M.Nieger,L.Nyulaszi,E.Niecke|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d192v
title: CCDC 2205776: Experimental Crystal Structure Determination

description: Related Article: Ayan Ghosh, Amit Pandey, Arijit Sengupta, Velavan Kathirvelu, Sarvesh S. Harmalkar, Sunder N. Dhuri, Keisham S. Singh, Tapan K. Ghanty|2023|Inorg.Chem.|62|14678|doi:10.1021/acs.inorgchem.3c01963
description: Related Article: AYAN GHOSH, Amit Pandey, Arijit Sengupta, Velavan KATHIRVELU, Sarvesh  S Harmalkar, Sunder N. Dhuri, Keisham S. Singh, Tapan K. Ghanty|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8421137
title: Simulation data

description: Simulation data for the publication
DOI: 10.5281/zenodo.8421136
title: Simulation data

description: Simulation data for the publication
DOI: 10.6084/m9.figshare.24271210.v2
title: Figure 3B. Placement of new MAGs in the global lucinid symbiont tree reveals patchiness in the distribution of nitrogen fixation genes, even within species clades.

description: Maximum likelihood phylogenomic tree inferred from GTDB’s multiple sequence alignment using the best-fit model Q.plant+F+I+G4, including MAGs published in this work and in Osvatic et al. 2023 ISMEJ.
DOI: 10.5281/zenodo.8421127
title: Australia Gross Primary Productivity (GPP) Dataset 2020 (Cleaned Updated .NC Files)

description: Australia Gross Primary Productivity (GPP) Dataset 2020 Product: Gross Primary Productivity (GPP) MODIS Tiles No: <strong>h30 v11 and h31v11</strong> Year: 2020 Region: Australia Temporal Scale: 8 Days Spatial Resolution: 500 meters Format: NetCDF (.nc) Projection: Geographic Lat/Long Method: Light-use-efficiency (LUE) approach. Referred Publication: https://www.sciencedirect.com/science/article/pii/S0048969718307149 https://onlinelibrary.wiley.com/doi/10.1111/gcb.12261
description: Please contact the authors for further details: S.bandopadhyay@soton.ac.uk j.dash@soton.ac.uk b.o.ogutu@soton.ac.uk
DOI: 10.5281/zenodo.8421126
title: Australia Gross Primary Productivity (GPP) Dataset 2020 (Cleaned Updated .NC Files)

description: Australia Gross Primary Productivity (GPP) Dataset 2020 Product: Gross Primary Productivity (GPP) MODIS Tiles No: <strong>h30 v11 and h31v11</strong> Year: 2020 Region: Australia Temporal Scale: 8 Days Spatial Resolution: 500 meters Format: NetCDF (.nc) Projection: Geographic Lat/Long Method: Light-use-efficiency (LUE) approach. Referred Publication: https://www.sciencedirect.com/science/article/pii/S0048969718307149 https://onlinelibrary.wiley.com/doi/10.1111/gcb.12261
description: Please contact the authors for further details: S.bandopadhyay@soton.ac.uk j.dash@soton.ac.uk b.o.ogutu@soton.ac.uk
DOI: 10.5517/ccdc.csd.cc2gg6pv
title: CCDC 2277777: Experimental Crystal Structure Determination

description: Related Article: Galina Romanenko|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gg706
title: CCDC 2277787: Experimental Crystal Structure Determination

description: Related Article: Olivia Koentjoro, Paul J. Low, Dmitry S. Yufit, Judith A.K. Howard|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ggbmx
title: CCDC 2277899: Experimental Crystal Structure Determination

description: Related Article: Lukas Kletsch, Julian Strippel, Axel Klein|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ggc1c
title: CCDC 2277912: Experimental Crystal Structure Determination

description: Related Article: Lukas Kletsch, Julian Strippel, Axel Klein|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ggc8l
title: CCDC 2277919: Experimental Crystal Structure Determination

description: Related Article: Lukas Kletsch, Julian Strippel, Axel Klein|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ggg1g
title: CCDC 2278005: Experimental Crystal Structure Determination

description: Related Article: Franck Dubois, Pascal Retailleau, Philippe Durand|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8374265
title: Spheroids workflow: KapoorLabs

description: Presentation material for workflow developed for cell segmentation, cell action type classification, tracking and auto track correction with track analysis and track classification for the group of Prof. Chris Bakal at ICR, London.
description: Computational support provided by Jean Zay dynamic access grants : AD011013724R1, AD011013695R1, AD011013695R1, AD011013396R1, AD011013396R1
DOI: 10.5281/zenodo.8374266
title: Animations for spheroid segmentation and tracking workflow

description: Some animations for spheroid segmentation and tracking workflow developed by KapoorLabs for Prof. Dr. Chris Bakals Lab at ICR, London.
description: Computational support provided by Jean Zay dynamic access grants : AD011013724R1, AD011013695R1, AD011013695R1, AD011013396R1, AD011013396R1
DOI: 10.5281/zenodo.8374321
title: Animations for spheroid segmentation and tracking workflow

description: Some animations for spheroid segmentation and tracking workflow developed by KapoorLabs for Prof. Dr. Chris Bakals Lab at ICR, London.
description: Computational support provided by Jean Zay dynamic access grants : AD011013724R1, AD011013695R1, AD011013695R1, AD011013396R1, AD011013396R1
DOI: 10.5281/zenodo.8374357
title: Animations for spheroid segmentation and tracking workflow

description: Some animations for spheroid segmentation and tracking workflow developed by KapoorLabs for Prof. Dr. Chris Bakals Lab at ICR, London.
description: Computational support provided by Jean Zay dynamic access grants : AD011013724R1, AD011013695R1, AD011013695R1, AD011013396R1, AD011013396R1
DOI: 10.5281/zenodo.8375693
title: Animations for spheroid segmentation and tracking workflow

description: Some animations for spheroid segmentation and tracking workflow developed by KapoorLabs for Prof. Dr. Chris Bakals Lab at ICR, London.
description: Computational support provided by Jean Zay dynamic access grants : AD011013724R1, AD011013695R1, AD011013695R1, AD011013396R1, AD011013396R1
DOI: 10.5281/zenodo.8416771
title: Spheroids workflow: KapoorLabs

description: Presentation material for workflow developed for cell segmentation, cell action type classification, tracking and auto track correction with track analysis and track classification for the group of Prof. Chris Bakal at ICR, London.
description: Computational support provided by Jean Zay dynamic access grants : AD011013724R1, AD011013695R1, AD011013695R1, AD011013396R1, AD011013396R1
DOI: 10.5281/zenodo.8421283
title: Spheroids workflow: KapoorLabs

description: Presentation material for workflow developed for cell segmentation, cell action type classification, tracking and auto track correction with track analysis and track classification for the group of Prof. Chris Bakal at ICR, London.
description: Computational support provided by Jean Zay dynamic access grants : AD011013724R1, AD011013695R1, AD011013695R1, AD011013396R1, AD011013396R1
DOI: 10.5281/zenodo.8409457
title: Swedish Diachronic Corpus - User-generated Data - Familjeliv Part I

description: The Swedish Diachronic Corpus (https://www2.lingfil.uu.se/person/pettersson/svediakorp/) is a project funded by Swe-Clarin (https://sweclarin.se/eng). The purpose of the project is to provide a corpus of texts covering the time period from Old Swedish to present day, with a wide variety of text types and freely available for download and search. The texts are provided in a plain text format and in a uniform CoNLL format, with placeholders for linguistic annotation. The dataset provided here is the first part of the Familjeliv section of the User-generated Data in the Swedish Diachronic Corpus. For other datasets within the corpus, see further the corpus website: https://www2.lingfil.uu.se/person/pettersson/svediakorp/. The project members are Eva Pettersson (Uppsala University) and Lars Borin (University of Gothenburg). For questions or comments, or if you are aware of any corpus resource that could be included in the Swedish Diachronic Corpus, don't hesitate to contact us!<br> <br> Eva Pettersson Department of Linguistics and Philology, Uppsala University eva.pettersson@lingfil.uu.se<br> Lars Borin Department of Swedish, University of Gothenburg lars.borin@svenska.gu.se
DOI: 10.5281/zenodo.8409456
title: Swedish Diachronic Corpus - User-generated Data - Familjeliv Part I

description: The Swedish Diachronic Corpus (https://www2.lingfil.uu.se/person/pettersson/svediakorp/) is a project funded by Swe-Clarin (https://sweclarin.se/eng). The purpose of the project is to provide a corpus of texts covering the time period from Old Swedish to present day, with a wide variety of text types and freely available for download and search. The texts are provided in a plain text format and in a uniform CoNLL format, with placeholders for linguistic annotation. The dataset provided here is the first part of the Familjeliv section of the User-generated Data in the Swedish Diachronic Corpus. For other datasets within the corpus, see further the corpus website: https://www2.lingfil.uu.se/person/pettersson/svediakorp/. The project members are Eva Pettersson (Uppsala University) and Lars Borin (University of Gothenburg). For questions or comments, or if you are aware of any corpus resource that could be included in the Swedish Diachronic Corpus, don't hesitate to contact us!<br> <br> Eva Pettersson Department of Linguistics and Philology, Uppsala University eva.pettersson@lingfil.uu.se<br> Lars Borin Department of Swedish, University of Gothenburg lars.borin@svenska.gu.se
DOI: 10.5522/04/24209346
title: Research data for "Disordered monitored free fermions"

description: Includes the code and research data used to generate all figures in the article "Disordered monitored free fermions". <br> The programs are written in C++ and can be used to calculate entanglement entropy, connected correlation functions, and single-particle wave functions in a monitored quantum circuit with free fermions in a disordered field. Compilation is described in the README file.<br> <br> The data includes averages in time of: entanglement entropy, central charge, connected correlation functions and envelopes of single-particle orbitals. Each dataset is named after the corresponding figure from the article and is stored in a text file.
DOI: 10.5522/04/24209346.v1
title: Research data for "Disordered monitored free fermions"

description: Includes the code and research data used to generate all figures in the article "Disordered monitored free fermions". <br> The programs are written in C++ and can be used to calculate entanglement entropy, connected correlation functions, and single-particle wave functions in a monitored quantum circuit with free fermions in a disordered field. Compilation is described in the README file.<br> <br> The data includes averages in time of: entanglement entropy, central charge, connected correlation functions and envelopes of single-particle orbitals. Each dataset is named after the corresponding figure from the article and is stored in a text file.
DOI: 10.5281/zenodo.8420297
title: S1-SAR-100m-2020-02-100m

description: S1-SAR-100m-2020-02-100m
DOI: 10.5281/zenodo.8420296
title: S1-SAR-100m-2020-02-100m

description: S1-SAR-100m-2020-02-100m
DOI: 10.5281/zenodo.8413211
title: Swedish Diachronic Corpus - User-generated Data - Familjeliv Part II

description: The Swedish Diachronic Corpus (https://www2.lingfil.uu.se/person/pettersson/svediakorp/) is a project funded by Swe-Clarin (https://sweclarin.se/eng). The purpose of the project is to provide a corpus of texts covering the time period from Old Swedish to present day, with a wide variety of text types and freely available for download and search. The texts are provided in a plain text format and in a uniform CoNLL format, with placeholders for linguistic annotation. The dataset provided here is the second part of the Familjeliv section of the User-generated Data in the Swedish Diachronic Corpus. For other datasets within the corpus, see further the corpus website: https://www2.lingfil.uu.se/person/pettersson/svediakorp/. The project members are Eva Pettersson (Uppsala University) and Lars Borin (University of Gothenburg). For questions or comments, or if you are aware of any corpus resource that could be included in the Swedish Diachronic Corpus, don't hesitate to contact us!<br> <br> Eva Pettersson Department of Linguistics and Philology, Uppsala University eva.pettersson@lingfil.uu.se<br> Lars Borin Department of Swedish, University of Gothenburg lars.borin@svenska.gu.se
DOI: 10.5281/zenodo.8413210
title: Swedish Diachronic Corpus - User-generated Data - Familjeliv Part II

description: The Swedish Diachronic Corpus (https://www2.lingfil.uu.se/person/pettersson/svediakorp/) is a project funded by Swe-Clarin (https://sweclarin.se/eng). The purpose of the project is to provide a corpus of texts covering the time period from Old Swedish to present day, with a wide variety of text types and freely available for download and search. The texts are provided in a plain text format and in a uniform CoNLL format, with placeholders for linguistic annotation. The dataset provided here is the second part of the Familjeliv section of the User-generated Data in the Swedish Diachronic Corpus. For other datasets within the corpus, see further the corpus website: https://www2.lingfil.uu.se/person/pettersson/svediakorp/. The project members are Eva Pettersson (Uppsala University) and Lars Borin (University of Gothenburg). For questions or comments, or if you are aware of any corpus resource that could be included in the Swedish Diachronic Corpus, don't hesitate to contact us!<br> <br> Eva Pettersson Department of Linguistics and Philology, Uppsala University eva.pettersson@lingfil.uu.se<br> Lars Borin Department of Swedish, University of Gothenburg lars.borin@svenska.gu.se
DOI: 10.5281/zenodo.8380389
title: Pink salmon smolt survey in Iceland in 2022

description: This dataset was created during the PinkSIES project. It consists of data collected during a fishing survey of pink salmon juveniles in Iceland in mid-May 2022 with measurements of fork length and wet mass of a subsample of fish captured. The juveniles were kept frozen in plastic bags before measurements. At the lab, the thawed fish were measured in length (to the nearest mm below) and weight to 1 mg. The data have been already published in a paper in the <em>Journal of Fish Biology</em> with open access (<strong>Evidence of successful recruitment of non-native pink salmon <em>Oncorhynchus gorbuscha</em> in Iceland</strong>; https://onlinelibrary.wiley.com/doi/10.1111/jfb.15556).<br> <br> The authors kindly request to cite the above paper, if you want to reuse the data. <br> <br> This project has received funding from the European Union’s Horizon 2020 Research and Innovation Programme under the Marie Skłodowska-Curie grant agreement No 101026030
description: Further details about fishing gear, fish measurements and biological samples are available on request from the authors