cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17592298
title: Dataset for a publication "Microstructure and Mechanical Properties of Biomedical Co-Cr-Mo Alloy Pro-duced by Precision Casting and 3D Printing Technologies"

description: General description:

The dataset accompanies the article "Microstructure and Mechanical Properties of Biomedical Co-Cr-Mo Alloy Pro-duced by Precision Casting and 3D Printing Technologies". It is organized into several subfolders.

 

Further details:

Further details can be found in the README.txt file.

 

Dataset versions:

V1 - original version being submitted on 2025-08-28.
DOI: 10.5281/zenodo.17592297
title: Dataset for a publication "Microstructure and Mechanical Properties of Biomedical Co-Cr-Mo Alloy Pro-duced by Precision Casting and 3D Printing Technologies"

description: General description:

The dataset accompanies the article "Microstructure and Mechanical Properties of Biomedical Co-Cr-Mo Alloy Pro-duced by Precision Casting and 3D Printing Technologies". It is organized into several subfolders.

 

Further details:

Further details can be found in the README.txt file.

 

Dataset versions:

V1 - original version being submitted on 2025-08-28.
DOI: 10.5167/uzh-280438
title: Show me your bookshelf, and I’ll tell you who you are
DOI: 10.15468/dl.af8u76
title: Occurrence Download

description: A dataset containing 48595 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((0.99227 46.04987,1.28741 46.18442,1.08793 46.35372,0.87654 46.2633,0.99227 46.04987))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 48595 records from 403 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044758-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bv9z4q
title: Occurrence Download

description: A dataset containing 99853 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alytes obstetricans"
 ]
}

 The dataset includes 99853 records from 1352 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044716-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15454/fwc5lp
title: Raw data and associated scripts of a study dedicated to the effect of tree diversity and water availability on nutrient use efficiency in forests

description: This dataset contains all raw data and associated scripts for a study dedicated to nutrient use efficiency in two common gardens manipulating tree diversity (species richness) and water availability (high vs low) in temperate forests. It contains data per species and at the plot-level about soil nutrient availability, productivity (aboveground net primary productivity, annual litterfall mass), litter nutrient concentrations, green leaf nutrient concentrations, nutrient use efficiency, and nutrient resorption efficiency for N, P, K, Ca, Mg, Mn.
DOI: 10.15454/fmcvma
title: Strawberry sequences of ANR and MYB102-like genes in Capitola and CF1116 genotypes

description: Strawberry sequences of ANR and MYB102-like genes in Capitola and CF1116 genotypes
DOI: 10.15454/ganj7j
title: Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array

description: R scripts and fluorescence intensity datasets of 24 controlled pools and 327 inbred lines panels extracted from 50K Illumina Infinium HD array (Ganal et al., 2010). These datasets and R scripts can be used to calibrate a model to predict allelic frequencies in new DNA bulks using the two step approach published by Arca et al., (2020) in Frontiers in Plant Science entitled "Deciphering the genetic diversity of landraces with high-throughput SNP genotyping of DNA bulks: methodology and application to the maize 50k array"
DOI: 10.15454/f9zsbs
title: Properties of biomass powders resulting from the fine comminution of straw and bark feedstocks by three types of ball-mill set-up (RBM, SBM, VBM)

description: This dataset gathers particle size distributions, agglomeration data, shape factors, rheological properties and SEM Images of 6 lignocellulosic biomass powders from 2 lignocellulosic feedstocks (Wheat Straw and Maritime Pine Bark) finley milled in three different devices : Rotary Ball Mill (RBM), Stirred Ball Mill (SBM) and Vibratory Ball Mill (VBM)
DOI: 10.15454/g3gbjc
title: Itinerary Description for biocomposites from poly(3-hydroxybutyrate-co-3-hydroxyvalerate) and lignocellulosic fillers

description: This dataset regroups the results of five projects aiming to produce biocomposite packagings from a polymeric matrix (PHBV) and different lignocellulosic fillers stemming from either crop residues (Chercheur d’avenir région Languedoc-Roussillon MALICE and H2020 NoAW), agro-food by-products (FP7 EcoBioCAP), urban parks and gardens green residues (H2020 Resurbis) and pure cellulose (H2020 Usable Packaging). For each of the 88 products described, fabrications steps as well as their components’ principal characteristics (compositions and measurements) are structured thanks to the Process and Observation Ontology (PO²), committed to the representation of transformation processes. The provided link allows to interrogate the ontology with SPO²Q, a dedicated web service proposing two ways for querying: (1) with an accessible form re-using the associated vocabulary, or (2) directly through queries expressed with the SPARQL language. All data are available at the following SPARQL endpoint: http://quantum.agroparistech.fr/graphdb/repositories/Composite_making_process. This dataset provides examples of SPARQL queries and their results. SPARQL queries are given in two forms: (1) classical SPARQL queries that can be directly addressed to the SPARQL endpoint; and (2) formatted queries that can be directly executed through SPO²Q. We also present two jupyter notebooks that give examples of how queries can be integrated with more complex python scripts. This dataset is linked with another dataset presenting the domain ontology used to define the vocabulary and the queries: https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/AIF6TX This domain ontology’s vocabulary can also be browsed online on AgroPortal: http://agroportal.lirmm.fr/ontologies/PO2-BIOREFINERY
DOI: 10.15454/hesva0
title: RNA expression dataset of 384 sunflower hybrids in field condition

description: This article describes how RNA expression data of 173 genes were produced on 384 sunflower hybrids grown in field conditions. Sunflower hybrids were selected to represent genetic diversity within cultivated sunflower. The RNA was extracted from mature leaves at one time 7 days after anthesis. These data allow to differentiate the different genotype behaviours and constitute a valuable resource to the community to study the adaptation of crops to field conditions and the molecular basis of heterosis.
DOI: 10.15454/gwdpin
title: Peach sequencing data (RNAseq)

description: RNAseq on ribodepleted total RNAs from GF305 indicator peach. From Inextvir9 project, StPV LC1220I, MLRSV LC1210G et ALRV LC128A.
DOI: 10.15454/fiuwgq
title: Compilation of diagnostic horizons data

description: This dataset corresponds to a datamart produced by the WP2 team of the Landmark H2020 project. The database was developed by using a decision tree based script which determines the presence or absence of selected WRB diagnostic units (horizons, properties and materials) based on the harmonized soil profile dataset. The python-based code was developed based on the criteria defined by the World Reference Base for Soil Resources 2014 for the selected diagnostic units, by considering the difference in the information content of the input soil profile databases. Besides the presence/absence information, the code returns a percentage of reliability which provides an estimation on the reliability of the prediction of a certain diagnostic unit. The attributes are presented in the "dh_dictionary" file.
DOI: 10.15454/hmtsxz
title: Continuous measurement of the volumes discharged from three French single-family homes

description: The data consist of water heights, measured and recorded every minute, corresponding to the volumes of raw wastewater discharged from three French single-family homes (H1, H10 and H11), measured for durations ranging from 1 year, 8 months to 2 years, 2 months. A piezometer-type pressure sensor measured the water height at a pumping station, controlled by float switches. The effective surface area of the pump station was 0.44 m2 for the dwellings H1 and H10, and 0.28 m2 for H11. These water heights allow to calculate (after multiplication by the unit surface area) the flow rates expressed in volume per minute. Number of files: 16 for H1, 14 for H10 and 12 for H11 Variables: "Start": start date of measurement "Date.H": end date of measurement "Status": recording validation "ANALOG-CH. (m)": water height in metres In addition to the water level files, you will find files on the quality of the raw wastewater discharged by all the households monitored over several years and a comments file ("Comments.csv") detailing the analytical standards used.
DOI: 10.15454/lfa0vn
title: Supplemental material - publication Irlinger and Monnet, 2021 - JDS

description: Supplemental table S1 (Proportion of bacterial or fungal operational taxonomic units (OTUs) in the samples (%)) and supplemental figure S1 (Alpha-diversity indices of bacterial communities during cheese-making and storage). Publication title: Temporal differences in microbial composition of Epoisses cheese rinds during ripening and storage (Journal of dairy science, 2021, https://doi.org/10.3168/jds.2021-20123)
DOI: 10.15454/gec9xx
title: Le déclin urbain comme question sociale. Une analyse des dynamiques contrastées des villes moyennes

description: Annexe et données de l'article publié dans la revue Espaces et Sociétés (DOI 10.3917/esp.191.0049)
DOI: 10.15454/h8cbyz
title: Beech and pedunculate oak data and tree-rings measurements from the Ciron valley

description: 317 Fagus sylvatica, 79 Quercus robur were GPS localized, with girth at breast height and some environment data. Their annual radial growth from 1820 to 2015 is also provided.
DOI: 10.15454/kiz3q6
title: Individual and group characteristics affecting nest building in sea lamprey

description: This dataset includes : -Data for Capture-Mark-Recapture analysis of sea lamprey during 2019 spawning season -Data of variables measured on sea lamprey nests and individuals -Code of Capture-Mark-Recapture model -Code of nests and individuals variables analyses
DOI: 10.15454/fz7ra7
title: Monolith 1 x 1 m Vegetation

description: Description of vegetation in subplots along an elevational gradient at Massif de Belledonne, France
DOI: 10.15454/hpr3uc
title: Performance of a non-invasive methodology for assessing oxygen diffusion in liquid and solid food products - O2 diffusivity in real food product

description: value unavailable
DOI: 10.15454/hbxkva
title: Automated pipeline for sequence-based microsatellite genotyping

description: Two bash scripts are provided to automated sequence-base microsatellite genotyping from data sequences generated by amplicon sequencing (SSRseq, SSR-GBS or similar approaches as described in Lepais et al. 2019, https://doi.org/10.7717/peerj.9085). The first script is used to compare genotype quality generated using different analyses strategies and parameters. The second script is used to generate the final genotypic dataset using optimized parameters. A virtual machine (.ova file) can be import into VirtualBox to execute an Ubuntu system that includes all tools already installed and ready to use (including scripts, software dependencies and example files).
DOI: 10.15454/hyrvuh
title: Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)

description: Method followed to obtain the Rsyst::diatom_rbcl_align_312bp database: 1/ Extraction of the 312bp rbcL barcode from the full Rsyst::diatom database rbcL alignment (using Diat_rbcL_108F and R3 primers). 2/ Sequences with ambiguities (N), homopolymers &gt; 8 and length &lt; 312bp are removed from the database. 3/ Resulting sequences are dereplicated into Individual Sequence Unit (ISUs) in order to identify taxa sharing identical DNA sequences on the 312bp rbcL barcode region. If necessary, taxonomy is harmonized between all taxa found in each single ISU. Finally, only ISUs are conserved in the database, each represented by 1 taxa ID and DNA sequence. 4/ Resulting ISUs database is assigned to itself using the Mothur assignment algorithm (classify.seqs command). Expected and newly obtained taxonomy are compared to evaluate potential source of biases (erroneous taxonomic name, taxa impossible to differentiate,...). If necessary, ambiguous sequence are removed from the database or taxonomy is adjusted. 5/ Finally, potential conflicting names are harmonized (e.g. "aff." and "cf." removed, "Nanofrustulum_sp._SZCZCH285" transformed into "Nanofrustulum_sp.") 6/ The ".fasta" file contains the rbcL 312bp DNA sequences and the ".txt" file contains the corresponding taxonomy (common sequence ID in both files). The sequence ID is composed by a accession number (present also in R-Syst::diatom library) and a the original taxnomic name given by the author of the sequence (eg: TCC7a-Rbcl-1|Fragilaria_vaucheriae). This sequence ID is shared by the .fasta and .txt files. 7/ The text file gathers the curated taxonomical information from empire to species level. For instance: TCC7a-Rbcl-1|Fragilaria_vaucheriae Eukaryota; Chromista; Chromobiota; Bacillariophyta; Fragilariophyceae; Fragilariales; Fragilariaceae; Fragilaria; Fragilaria_nanoides. In this case, Fragilaria_vaucheriae is the original species name given by the author and Fragilaria_nanoides is the curated species name adapted to metabarcoding. This database has been curated for a specific use with filtering procedure based on our own experience and is provided on an indicative basis. The original database, R-Syst::diatom, is the reference and you can curate it differently to meet your personal requirements and final usages.
DOI: 10.15454/nwrhda
title: Root water status in three contrasted herbaceous species grown in rhizotrons

description: This dataset contains NMR and ecophysiological data that support the findings of a manuscript “Circadian variation of root water status in three herbaceous species assessed by portable NMR” submitted to Plants for publication. Data are acquired using NMR MOUSE® spectrometer as described in the article. For each plant, raw NMR depth profile data are in the compressed (win.rar RARLab® GmbH, Allemagne) file named “RawDataProfilesDactylis.rar, RawDataProfilesMedicago.rar and RawDataProfiles Plantago.rar”. The profiles acquired as the function of time are stored in the sequentially numbered binary .dat files with 4 colons. The first colon in contains the position of the measurement volume in micrometer, the second contains the average of the first 16 points of the 256 acquired echoes, the third one contains the average of the first 32 echoes whereas the fourth, which is used in the article, is the average value of the whole 256 echoes. The acquisition parameters are summarized in the acqu_XX.par file (where XX is the name of the species). The raw data of transversal echo decays for T2 measurements are in the compressed RawDadaT2DecaysXX.rar (XX= species name) which contain the numbered folders embedding the csv 3 colon-data file. The first colon is the time in ms, the two others are the real and imaginary part of the echo amplitude. The acquisition parameters are in in the acqu.par file located in the first folder. The full results of the nnls inversion of the echo decays wer also provided in the matlab (Matlab®, The MathWorks, Inc) .mat files DatctylisT2FitResultReg.mat, MedicagoT2FitResultReg.mat and PlantagoT2FitResultReg.mat In addition to the NMR Data, a compressed file "Ecophy_data.rar" containing ecophysiological data in Excel format is provided. Each excel workbook named according to the name of the species (“Data_D_glomerata.xlsx”, “Data_P_lanceolata.xlsx”, and “Data_M_sativa.xlsx”) contains climatic chamber parameters (sheet Climatic Chamber), ecophysiological data (sheet Ecophysiology) along with a sheet “ReadMe” sheet, describing the file content. Only data acquired during NMR experiments (depth profiles and T2 measurements) are provided. - The sheet “Climatic Chamber” is composed of 6 colons : the first contains the acquisition time of the CO2 concentration (colon 2) and of photosynthetic active radiation (colon 3). The fourth colon contains the acquisition time of air temperature (colon 5) and humidity (colon 6). - The sheet “Ecophysiology” is composed of 5 colons. The two first contain the acquisition time and the values of soil humidity respectively. The third colon contains the acquisition time of leaf water potential whose values are provided in the colons 4 and 5 (one colon/leaf).
DOI: 10.15454/iopgyf
title: FruitBreedomics apple high-density SNP genotyping dataset

description: This dataset contains SNP data obtained by using the Axiom®Apple480K array (Bianco et al., 2016) on 1355 apple accessions from nine mostly European institutions and 92 apple progeny individuals from two parental combinations. Among the accessions, 1341 are diploid, 12 are triploid, and two are doubled haploid. These data were mainly obtained in the frame of the EU seventh Framework Programme project FruitBreedomics: Integrated Approach for increasing breeding efficiency in fruit tree crops (http://www.fruitbreedomics.com/). Two dataset versions are available (see tab "Versions"). In Dataset 1.0, the files with root "FruitBreedomics_apple_253K_SNP" are those used for studying apple pedigrees as described in Muranty et al (2020). In Dataset 2.1, the files with root "FruitBreedomics_apple_320K_SNP" are those used for generating high density SNP data for the apple reference population, as described in Jung et al (2020 ; see Métadonnées/Metadata for this publication). The files with the suffix ".bed" are genotyping matrix in plink binary format, the files with the suffix ".bim" contain positions of loci in plink binary format and the files with the suffix ".fam" contain identifiers of the genotypes plink binary format. This format is described at http://zzz.bwh.harvard.edu/plink/data.shtml#bed.
DOI: 10.15454/lu1e3y
title: RPG complété 2018 département 11

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 11. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/ncnchg
title: R functions to compute potential evaporation

description: Functions in R language to compute potential evaporation with six different formula: Pennman-Monteith, Pennman, Hamon, Hargreaves, Priestley-Taylor, Morton. Another R function compute the Penman-Monteith potential evaporation including the effect of CO2 on stomatal resistance.
DOI: 10.15454/mu0hxx
title: Leaf, stem and root xylem trait data

description: Trait data for leaves, stems and coarse roots for 90 tree species from tropical, Mediterranean and temperate climates
DOI: 10.15454/q1qjyk
title: Genome assembly and annotation of Plasmopara muralis, the downy mildew pathogen on Parthenocissus tricuspidata and Parthenocissus quinquefolia

description: This dataset includes the assembly and annotation of the Plasmopara muralis genome (INRA-PM001 isolate). Plasmopara muralis is the causal agent of downy mildew on Parthenocissus tricuspidata and Parthenocissus quinquefolia. The paper describing the genome is now published in Genome Biology and Evolution (doi.org/10.1093/gbe/evz048). Archives can contain README files with important information, ignore them at your own risk. If you have any question, request or commentary, you can email the dataverse contact.
DOI: 10.15454/lry3m2
title: Data from: Nonlinear Effects Induced by Interactions among Functional Groups of Bacteria and Fungi Regulate the Priming Effect in Malagasy Soils.

description: Data and R-code used in the paper Nonlinear Effects Induced by Interactions among Functional Groups of Bacteria and Fungi Regulate the Priming Effect in Malagasy Soils, by Benoît Jaillard, Kanto Razanamalala, Cyrille Violle and Laetitia Bernard, published in Microorganisms 2023, 11, 1106. https://doi.org/10.3390/ microorganisms11051106
DOI: 10.15454/omo2jc
title: TREEPEACE: Development of target sequence capture and estimation of genomic relatedness in a mixed oak stand

description: Le jeu de données est constitué de 191,281 SNPs identifiés dans 297 arbres (mélange de Q. robur et Q. petraea) situés dans la forêt de La Petite Charnie. Ces SNPs ont été détectés sur le génome de référence du chêne 3P, obtenu dans le cadre du projet ANR Genoak et hébergé par l'Urgi (https://urgi.versailles.inra.fr/Projects/Forest-trees-projects/GenOak). Les SNPs sont également accessibles sur le JBrowse de l'URGI. Ces données ont été obtenues dans le cadre de l'ERC TreePeace (#FP7-339728) dirigée par Antoine Kremer.
DOI: 10.15454/kmux39
title: Raw data for the paper "Host-mediated, cross-generational intraspecific competition in a herbivore species"

description: The file contains raw data used in the paper "Host-mediated, cross-generational intraspecific competition in a herbivore species". `x` and `y` are the position of each box tree in the green house; `Treatment` is the prior herbivory treatment; `Clutch.number` is the total number of egg clutches counted on a given box tree; `N.L3` is the number of retrieved L3 larvae, `L3.mean` is the mean weight of a L3 larvae (g); `N.chrysalids` is the number of retrieved chrysalis; `Chrysalid.mean` is the mean weight of a chrysalis. `Herbivory` is the % of leaves consumed by box tree moth larvae, which was either measured or estimated where raw data was missing (`Herbivory_source`)
DOI: 10.15454/pwwmyv
title: Stable State Infiltration

description: Water infiltration into soil along an elevational gradient at Massif de Belledonne, France
DOI: 10.15454/qkwvnd
title: RPG complété 2019 département 91

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 91. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/qsmrmx
title: Data for: Low temperature has opposite effects on sex determination in a marine fish at the larval/post-larval and juvenile stage

description: This dataset contents: A) biometric and sex data on European sea bass juveniles submitted to 16 different temperature regimes. B) a R workflow (.rmd) to analyze the data in (A) C) gene expression data for ten genes including cyp19a1a and gsdf in fish from 4 of the temperature groups D) a R workflow to analyze data in (C) and plot Figure 2
DOI: 10.15468/dl.dvxeph
title: Occurrence Download

description: A dataset containing 3965 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Porites lobata Dana, 1846"
 ]
}

 The dataset includes 3965 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154552-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lzfzwl
title: Occurrence Download

description: A dataset containing 430 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pelophylax kl esculentus (Linnaeus, 1758)"
 ]
}

 The dataset includes 430 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031669-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.