cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/hprjsbwfcj
title: $Apart: A generalized Mathematica Apart function

description: Abstract We have generalized the Mathematica function Apart from 1 to N dimensions: the generalized function $Apart can decompose any linear dependent elements in Vx* to irreducible ones. The elements in Vx* can be viewed as the corresponding propagators which involve loop momenta, and the decomposition will be useful when one tries to perform loop calculations using packages such as Fire and Reduze, which have implemented the integration by parts (IBP) identities and Lorentz invariance (LI) identitie... Title of program: $Apart Catalogue Id: AEMK_v1_0 Nature of problem The traditional method of computing cross sections for a physical process in perturbative quantum field theory involves generating the amplitudes via Feynman diagrams and performing the dimensionally regularized loop integrals [1]. Simplifications of the expressions are performed at the analytical level, there an essential part is the reduction of these loop integrals to a small number of standard integrals. This step can be performed at the amplitude level for tensor integrals or, after contrac ... Versions of this program held in the CPC repository in Mendeley Data AEMK_v1_0; $Apart; 10.1016/j.cpc.2012.03.025 AEMK_v2_0; APart 2.0; 10.1016/j.cpc.2015.09.012 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/xzpp4vtdcr
title: LINF_110011600

description: 3-methylcrotonoyl-CoA carboxylase beta subunit; Leishmania infantum (strain JPCM5)
DOI: 10.17632/ydgj5vg7kh
title: Vulnerabilities Ciberdefense in Latin America

description: This file contain information data about systematic review of paper with title "A Comprehensive Analysis of the Worst Cybersecurity Vulner-abilities in Latin America "
DOI: 10.17632/mcn3zxhmb5
title: Journal of Studies in Islam and Psychology; No. 35

description: The main objective of Studies in Islam and Psychology is to provide an intellectual platform for national and international researchers to discuss their most recent findings related to Islamic psychology and counseling. By doing so, the journal hopes to improve the status of the field in Iran and in the world and to find solutions to theoretical and practical problems the profession is faced with. To serve this purpose, researchers are encouraged to submit their unpublished, original, full-length papers for potential publication in the journal. 

The journal is set to publish original articles on a wide range of issues including;

 The philosophy of psychology with a critical outlook from the perspective of Islam;
 The uses of psychology in the service of the Islamic society and its needs;
 The formation of psychology in the Islamic society;
 Psychological analysis of Islamic concepts in areas such as:
 1. Anthropology, such as: banned, impatience, hasty, captious, pious, faithful;
 2. Belief, such as: God, resurrection, Imamate, intercession, Paradise, Hell and ...;
 3. Value, such as: repentance, trust, self-esteem, mental relaxation, grief, fear;
 4. Practical instructions of Islam, such as: qisas (retaliation), prayers, inheritance, hajj, khums (one fifth);
 Study of psychological findings from Islamic perspective in terms of critique, confirmation and completion, alternative presentation, presentation of new theory;

To let individual researchers and libraries have access to the most recent research findings in the field, the journal allows open-access to its articles. This journal utilizes the Magiran and Noormags preservation systems to create a distributed archiving system for individual and libraries and to permit libraries stakeholders to create permanent archives of the journal.
DOI: 10.6084/m9.figshare.12417239.v1
title: Figure 5 Histopath slides

description: Histopathology data
DOI: 10.17632/bzgfk52msk
title: pyHMA: A VASP post-processor for precise measurement of crystalline anharmonic properties using harmonically mapped averaging

description: We introduce a new Python package (pyHMA) that interfaces with VASP to compute (classical) anharmonic properties of crystalline systems by post-processing data from NVT Born–Oppenheimer ab initio molecular dynamics (AIMD) simulation. It is based on the recently developed harmonically mapped averaging (HMA) method, which leverages the analytically known harmonic behavior to reformulate the direct/conventional ensemble averages in order to significantly improve precision, for a given CPU time. The package consists of two stages: reading AIMD data from vasprun.xml file(s) and then computing anharmonic properties. While the first stage is MD package-dependent, the second one is universal, given that it receives data in the required format. To demonstrate the usage of pyHMA, we compute anharmonic energy and pressure of aluminum fcc crystal at high pressure (~ 115 GPa) and up to 4000 K (near melting). We further compute anharmonic free energy as a function of temperature, using thermodynamic integration of the HMA anharmonic energy. Although pyHMA currently interfaces with VASP to compute HMA anharmonic energy and pressure, it is moduled in such a way to allow for interfacing with other codes (e.g., LAMMPS) by adding a new reader and can compute other HMA anharmonic properties (e.g., heat capacity) by adding a new method, once relevant data are available.
DOI: 10.17632/v2wzhr3twm
title: Intra- and interspecific toxicity data for nematodes exposed to metals

description: Twenty-four hour median lethal concentration (24hr-LC50) toxicity tests were performed with five species of nematodes (Caenorhabditis elegans, Caenorhabditis briggsae, Pristionchus pacificus, Oscheius tipulae, and Oscheius myriophila) in response to copper chloride and zinc chloride. In addition, lethality tests were also performed with seven strains of C. elegans (N2 >1 year in culture, N2 newly acquired, N2 ancestral, ED3053, JU258, JU1171, and MY1) exposed to copper chloride. Nominal chemical concentrations were validated and analyzed according to U.S. Environmental Protection Agency method 6010 using inductively coupled plasma–atomic emission spectroscopy (ICP-AES). Files with raw toxicity data, LC50 calculations, and chemical concentration validation are all reported here. The results indicate that P. pacificus is the most sensitive species to both metals. Conversely, C. elegans is the least sensitive species to copper, but the second most sensitive to zinc, indicating that species relationships do not necessarily predict species sensitivity. We also found that the four wild strains of C. elegans are more sensitive than standard laboratory N2 strains to copper, especially the N2 strain that was cultured in the lab for >1 year, suggesting that long-term lab strains may be less sensitive to copper than their wild counterparts.
DOI: 10.6084/m9.figshare.24145383.v1
title: Supplementary Material for: Impact of 14 days of bed rest in older adults and an exercise countermeasure on body composition, muscle strength and cardiovascular function: Canadian Space Agency standard measures

description: Introduction: Head-down bed rest (HDBR) has long been used as an analog to microgravity and it also enables studying the changes occurring with aging. Exercise is the most effective countermeasure for the deleterious effects of inactivity. The aim of this study was to investigate the efficacy of an exercise countermeasure in healthy older participants on attenuating musculoskeletal deconditioning, cardiovascular fitness level and muscle strength during l4 days of HDBR as part of the standard measures of the Canadian Space Agency. Methods: Twenty-three participants (12 males and 11 females), aged 55-65 years, were admitted for a 26-day inpatient stay at the McGill University Health Centre. After 5 days of baseline assessment tests, they underwent 14 days of continuous HDBR followed by 7 days of recovery with repeated tests. Participants were randomized to passive physiotherapy or an exercise countermeasure during the HDBR period consisting in 3 sessions per day of either high-intensity interval training (HIIT) or low-intensity cycling or strength exercises for the lower and upper body. Peak aerobic power (V̇O2peak) was determined using indirect calorimetry. Body composition was assessed by dual-energy X-ray absorptiometry (DXA) and several muscle group strengths were evaluated using an adjustable chair dynamometer. A vertical jump was used to assess whole-body power output and a tilt test to measure cardiovascular and orthostatic challenge. Additionally, changes in various blood parameters were measured as well as the effects of exercise countermeasure on these measurements. Results: There were no differences at baseline in main characteristics between the control and exercise groups. The exercise group maintained V̇O2peak levels similar to baseline whereas it decreased in the control group following 14 days of HDBR. Body weight significantly decreased in both groups. Total and leg lean masses decreased in both groups. However, total body fat mass decreased only in the exercise group. Isometric and isokinetic knee extension muscle strength was significantly reduced in both groups. Peak velocity, flight height and flight time were significantly reduced in both groups with HDBR. Conclusion: In this first Canadian HDBR study in older adults, an exercise countermeasure helped maintain aerobic fitness and lean body mass without affecting the reduction of knee extension strength. However, it was ineffective in protecting against orthostatic intolerance. These results support HIIT as a promising approach to preserve astronaut health and functioning during space missions, and to prevent deconditioning as a result of hospitalization in older adults.
DOI: 10.6084/m9.figshare.24865989.v1
title: Supplementary Material for: Prognostic Significance of Intratumoral and Peritumoral Budding in Distal Extrahepatic Bile Duct Carcinoma

description: Introduction: Although tumor budding (TB) has been recognized as a representative adverse prognosticator in gastrointestinal malignancies, it is not well-elucidated in distal extrahepatic bile duct carcinoma (DBDC). Herein, we investigated the prognostic significance of peritumoral (PTB) and intratumoral (ITB) budding according to the modified DBDC staging of the 8th edition of the American Joint Committee on Cancer. 
Methods: PTB and ITB were independently evaluated in a cohort of DBDC patients (n = 410) based on the 2016 International Tumor Budding Consensus Conference (ITBCC). 
Results: High levels of PTB (PTBHigh, ≥ grade-2) and ITB (ITBHigh, ≥ grade-3) were identified in 316 (77%) and 238 (58%) cases, respectively. In univariate analysis, PTBHigh and ITBHigh, larger size and sclerosing tumor growth pattern, higher histologic grade, extrapancreatic location, adenocarcinomas unrelated to intraductal papillary neoplasm of the bile duct (IPNB), pancreatic, duodenal, and lymphovascular invasion, perineural invasion, cancer involvement of the bile duct resection margin, nodal metastasis, and higher T and N categories and disease stages were associated with shorter patient overall survival (OS) times. In multivariate analysis, PTBHigh and ITBHigh remained poor independent prognostic indicators of OS in DBDC patients. Specifically, ITBHigh could predict poor prognosis in patients with stage I (T1N0) DBDC. 
Conclusions: Both PTBHigh and ITBHigh were strong prognostic indicators in patients with DBDC. Thus, ITB could be used to predict worse prognoses in patients with DBDC, in which PTB is difficult to assess, especially for patients with stage I (T1N0) DBDC.
DOI: 10.17632/nj7mbtt5b2
title: Mitochondrial DNA Breaks Activate an Integrated Stress Response to Reestablish Homeostasis

description: This is the raw data used in the attached paper
DOI: 10.17632/j48mvzsbhr
title: A Complex Hierarchy of Avoidance Behaviors in a Single-Cell Eukaryote, Dexter et al. (Day 11)

description: Videos for Dexter et al. (Day 11)
DOI: 10.17632/r9bhpv6vx9
title: Data for "Best Thermoelectric Efficiency of Ever-Explored Materials" by Ryu et al., using Starrydata2

description: Rawdata and post-processed datasets are provided for "Best Thermoelectric Efficiency of Ever-Explored Materials," which is published in an iScience article (https://doi.org/10.1016/j.isci.2023.106494). The dataset includes thermoelectric samples, related publication information, thermoelectric properties (TEPs) data with filter information, and the best thermoelectric materials and device efficiencies. Note that the material samples data were extracted from Starrydata2.org, with the rawdata version dated 2021-Nov-24th, and were then extensively investigated for material and device efficiencies. The materials' TEPs data have been filtered and cleaned. Using the TEPs in the cleaned dataset, the best efficiencies of material samples were calculated within one-dimensional thermoelectric leg models. In total, 100 million efficiencies were calculated for P-N leg pair devices across approximately 13 thousand ever-explored materials. Further details can be found in the related publication.
DOI: 10.6084/m9.figshare.28099163.v3
title: An analytical framework for estimating above and below ground net primary productivity using a rate limitation approach: data source and figure code

description: In this dataset, 846 field-observed ANPP samples, of which 297 with both ANPP and BNPP data were primarily obtained from three sources: (1) Long Term Ecological Research (LTER) database (Long Term Ecological Research Network, 2016), (2) the Oak Ridge National Laboratory Distributed Active Archive Center (ORNL DAAC, http://daac.ornl.gov/) database, and (3) Web of Science using the keyword “ANPP” and “BNPP” or “above/below ground net primary productivity” for publications that might contain ANPP and BNPP data sets. All the ANPP/BNPP/fBNPP observations were screened according to the following criteria. (1) Observations without site-description (e.g., latitude or longitude) were excluded. (2) Observation sites disturbed by human activities (e.g., fertilization, grazing or other human experiments) were also excluded. (3) Measurements with longer durations recorded in the same place were reserved. The observations were in units of dry matter form (g m<sup>-2 </sup>yr<sup>-1</sup>)
DOI: 10.6084/m9.figshare.7082948.v1
title: Data from - Learning from others: an invasive lizard uses social information from both conspecifics and heterospecifics

description: Dataset from a study that investigated the ability of the invasive Italian wall lizard (Podarcis sicula) to solve a novel foraging task when social information was available from both a conspecific and an unfamiliar heterospecific (Podarcis bocagei).<br><br>
DOI: 10.17632/n8j35fsm4b
title: Passenger Cars' Policy Data

description: This data set shows the policy data and typical vehicle information of the passenger car market in China from 2012 to 2018
DOI: 10.6084/m9.figshare.22273048.v1
title: Untitled Item

description: Our cleaned dataset with id strings of tweets containing "fast fashion" with only original, English tweets for our Winter 2023 Digital Humanities 120: Social Media Data Analytics project at UCLA.
DOI: 10.17605/osf.io/e2ftw
title: Orthoptera_upward_migration

description: This is a repository for the code and the data used for the paper "Climate-induced upslope shift of orthopteran herbivores imposes greater herbivory through trait complementarity" written by Baptiste Bovay, Emilien Jolidon, Patrice Descombes, Emmanuel Defossez and Sergio Rasmann, and published in Functional Ecology in 2025.
DOI: 10.6084/m9.figshare.24087393.v1
title: Supplementary Material for: Mismatch repair deficiency in biliary tract cancer: prognostic implications and correlation with histology.

description: Introduction: Mismatch repair (MMR) deficiency represents a biomarker and therapeutic target in various neoplasms, but its role in biliary tract cancers (BTCs) remains misunderstood. Methods: MMR status was retrospectively assessed using immunohistochemistry in 163-BTCs patients. We identified MMR proficiency (pMMR)/deficiency (dMMR) according to the loss of MMR proteins (MLH-1, PMS-2, MSH-2, MSH-6). The primary objective of the study was to assess the incidence of dMMR in BTCs; the secondary purpose was to explore its association with prognosis and clinical features. Results: dMMR was recorded in 9 patients and it was strongly associated with mucinous histology (p&lt;0.01). Regarding the prognostic effect, in 122-radically resected patients, disease-free-survival (DFS) resulted significantly shorter in dMMR-patients compared to pMMR-patients (10.7 vs 31.3 months, p = 0.025) and so did nodal status (48.2 vs 15.3 months in N0 vs N+) (p &lt; 0.01). Moreover, dMMR confirmed its prognostic role in terms of DFS at multivariate analysis (p = 0.03), together with nodal status (p = 0.01) and resection margin (p = 0.03). In 103 M+ patients (encompassing 41 metastatic de novo and 62 recurred after surgery patients) there weren’t differences between dMMR and pMMR regarding survival analyses. Discussion/Conclusions: dMMR status is strongly correlated with mucinous histology and represents an independent prognostic factor in terms of disease-relapse in patients with resected BTC.
DOI: 10.17632/92cmzf224x
title: Data for: 3623834

description: Primary dataset have been collected from the respondents who were the patient of COVID-19 and have had experience about the disease of COVID-19
DOI: 10.17632/fs2j9gz8sv
title: CA-passive-active-QS: Code for paper “A Cellular Automata Model of a Laser reproducing laser passive and active Q-switching”

description: Code for paper “A Cellular Automata Model of a Laser reproducing laser passive
and active Q-switching”.
DOI: 10.6084/m9.figshare.14610135.v1
title: Subgoal paper data.zip

description: Tracking and stimulus data in pandas dataframe format supporting the findings of Shamash et al. Mice learn multi-step routes by memorizing subgoal locations (2021).
DOI: 10.17632/t8khcctr94
title: User interface (UI) funcitonality and aesthetics for color blind (CVD) users

description: Color vision deficiency (CVD, color blindness) is the failure or decreased ability to distinguish between certain colors even under normal lighting conditions. There are over 300 million people worldwide with CVD including approx. 1 in 12 men (8\%) and 1 in 250 women (0.5\%). CVD can limit a user's ability to interact with websites and software packages that are otherwise basic commodities for the average user. User interface designers have taken various approaches to tackle the issue with some interfaces offering a high-contrast mode, and others integrating color-blind awareness into their website design process. The Web Content Accessibility Guidelines (WCAG) outline some best practices for maintaining accessibility that have been adopted and recommended by several governments; however, it is currently uncertain how this impacts perceived user functionality and if this could result in a reduced aesthetic look. In our work, we present a subjective user study to measure the loss of functionality and aesthetics as potentially seen by CVD observers for 20 popular websites and software packages.
This dataset contains the results of the experiment (data_clean.csv) alongside the stimuli images.
DOI: 10.17632/7ryrp25y6z
title: tooth germ single-cell

description: Single-cell data for the following publication: Shi, Y., Yu, Y., Zhou, Y. et al. A single-cell interactome of human tooth germ from growing third molar elucidates signaling networks regulating dental development. Cell Biosci 11, 178 (2021). https://doi.org/10.1186/s13578-021-00691-5
DOI: 10.17632/cmt34sbmhk
title: Questionnaire and Consent Form on Construction Risk Management

description: Data includes a) Questionnaire covering Knowledge , Attitude and Practices of Risk Management System in Construction Industry and b) Informed Consent form
DOI: 10.6084/m9.figshare.6816917.v1
title: Methylation and expression data for whole-genome human imprinting study

description: Supplementary data for Zink et al. , "Insights into Imprinting from Parent-of-Origin Phased Methylomes and Transcriptomes", Nature Genetics (2018)<br>We combined whole genome oxidative bisulfite sequencing of 285 people and allele-specific RNA-seq from 11,617 blood samples with parent-of-origin (PofO) phased haplotypes, to produce a new map of imprinted methylation and gene expression patterns across the human genome.<br>Here we make available data files with average and PofO-specific methylation levels per CpG site, <i>P</i>-value for PofO-specific methylation per CpG site, and <i>P</i>-value for PofO-specific expression per exonic SNP, respectively<br>
DOI: 10.17632/4kmfjb4yrb
title: Data for: Structural analyses and peak-temperature estimations for the Sanbagawa Metamorphic and Shimanto Accretionary complexes on the central Kii Peninsula, SW Japan: Implications for the tectonic development of Cretaceous subduction complexes

description: This is the original data for “Structural analyses and peak-temperature estimations for the Sanbagawa Metamorphic and Shimanto Accretionary complexes on the central Kii Peninsula, SW Japan: Implications for the tectonic development of Cretaceous subduction complexes”.
DOI: 10.17632/drt5b7nmyy
title: Data for: A melt inclusion study on volatile abundances in the lunar mantle

description: This repository file contains all the major element, transition metal, volatiles, and other trace element data reported in Ni et al. (2018) "A melt inclusion study on volatile abundances in the lunar mantle."
DOI: 10.6084/m9.figshare.23354174.v1
title: Dentate Gyrus dataset

description: Dentate Gyrus dataset
DOI: 10.6084/m9.figshare.25540123.v1
title: Crotalus_adamanteus_haplotype1_genome_assembly

description: Chromosome-level and haplotype-resolved genome assembly of Crotalus adamanteus using PacBio HiFi and HiC data.This is the hapltype 1 genome assembly linked to the BioSample SAMN30275639 in NCBI.
DOI: 10.6084/m9.figshare.4299866.v1
title: Supplementary Material for: Serum Bicarbonate Is Associated with Heart Failure in the Multi-Ethnic Study of Atherosclerosis

description: <b><i>Background:</i></b> Low serum bicarbonate concentrations are associated with mortality and kidney disease progression. Data regarding associations between bicarbonate and cardiovascular disease (CVD) are scarce. <b><i>Methods:</i></b> We performed a cohort study of 6,229 adult participants from the Multi-Ethnic Study of Atherosclerosis, a community-based cohort free of CVD at baseline. Serum bicarbonate was measured at baseline. Cardiovascular outcomes were defined as: (1) subclinical CVD (left ventricular mass [LVM] and aortic pulse pressure [PP] measured at baseline), (2) incident atherosclerotic cardiovascular events (CVE; composite of myocardial infarction, resuscitated cardiac arrest, stroke, coronary heart disease death, and stroke death), and (3) incident heart failure. <b><i>Results:</i></b> During a median (interquartile range) follow-up of 8.5 (7.7-8.6) years, 331 (5.3%) participants had an incident CVE and 174 (2.8%) developed incident heart failure. We stratified analyses by use of diuretics because we observed a significant interaction between diuretic use and bicarbonate with study outcomes. Among diuretic nonusers, with adjustment, bicarbonate ≥25 mEq/L was associated with an estimated 3.0 g greater LVM (95% CI 0.5-5.0) and 1.0 mm Hg higher aortic PP (95% CI 0.4-2.0) compared to bicarbonate 23-24 mEq/L. Each 1 mEq/L of bicarbonate increase was associated with a 13% higher risk of incident heart failure (hazards ratio 1.13, 95% CI 1.01-2.11). Among diuretic users, higher bicarbonate was not associated with CVD. Bicarbonate was not associated with incident atherosclerotic CVE irrespective of diuretic use. <b><i>Conclusion:</i></b> Among nonusers of diuretics in a large community-based study, higher serum bicarbonate concentrations are associated with subclinical CVD and new heart failure.
DOI: 10.60893/figshare.jcp.28454822.v1
title: Supplemental Dataset

description: The supplementary material contains the code used to generate and analyze the results of this paper.