cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28295462.v1
title: Datasets

description: These datasets were extracted as part of a meta-analysis examining interventions aimed at promoting physical activity in retirement-age adults. These datasets, along with the scripts, can reproduce the analyses performed.
DOI: 10.17632/ns9f6mf8jp
title: TORS vs Open Oral cancer

description: The original data for comparison of TORS and open surgery for oral cancer.
DOI: 10.6084/m9.figshare.23397866.v1
title: Dataset containing the 8,866 tweet IDs from London, of which we sampled and analysed 600 posts in our study "Private garden uses during the first UK Covid-19 lockdown and associated mental health benefits"

description: Full dataset of our submitted research article manuscript, titled "Private garden uses during the first UK Covid-19 lockdown and associated mental health benefits". This dataset includes the 8,866 IDs of the tweets that were obtained for the from the Twitter API (Full Archive). <br> In the dataset, we provide, following the Twitter guidelines, simply the <em>ID </em>for the tweet (dehydrated tweets). Via the ID, the original tweets can be looked up on the Twitter platform (hydradtion of tweets), manually or via software packages. In our dataset, we include information on the <em>study period</em> (during first UK Covid-19 lockdown in 2020; control period in 2019) and on whether a tweet was eventually thematically analysed. 5,591 tweets are from during the 2020 lockdown and 3,278 from the control year in 2019. We read 884 tweets from the Covid-19 lockdown period and 2,702 tweets for obtaining 300 tweets from each period (600 in total) for the thematic analysis. <br> For any analysed tweets, we provide the results of the (abductive) thematic analysis, with the categories regarding <em>garden use</em> and (if applicable) mental health benefit.
DOI: 10.17632/ffb7bh9sw6
title: distal radius fracture

description: distal radius fracture
DOI: 10.6084/m9.figshare.14325321.v1
title: An Analytical Study About the Use of Steel Plate Shear Walls to Improve Lateral Rigidity of Reinforced Concrete Framed Structures

description: Abstract Steel plate shear walls are becoming popular for steel structures. In this study, the use of Steel Plate Shear Walls (SPSW) was discussed to increase the horizontal stiffness of reinforced concrete structures. It was aimed to fix the SPSW elements to the exterior of the building. ABAQUS models of SPSW applied 2D frame samples, which were tested in a previous experimental study, were created. Experimental and analytical horizontal load-top displacement curves were found to be in good agreement. In the study, ABAQUS models of a 6-story and 3D reinforced concrete building were also created. In models, SPSW elements were placed at the exterior of the building. The load capacities of the reinforced and non-reinforced building models were compared. The steel sheet thickness and the number of frame openings at which the SPSW element was placed were considered as the variable parameters.
DOI: 10.17608/k6.auckland.23272349.v1
title: Dataset IVa_SET and OLE Course and Teacher Evaluation Reports MEDSCI 203_2018-2021_v1 01-06-2023.pdf

description: <i>Dataset IV:</i> We collected routine anonymous Student Evaluation of Teaching [SET] and formative evaluations from the course 'MEDSCI 203 - Mechanisms of Disease' from 2018 to 2021. We retrospectively analyzed the data to compare students' perceptions of the course before and after incorporating interactive online resources made with H5P, first introduced in 2019 by an early adopter of H5P. The response rate range was 14.1 - 97% out of a class of 182 (2018) - 314 (2021) students per year.<br>This is underlying data associated with the article 'Faculty development for strengthening online teaching capability: being responsive to what staff want, evaluated with Kirkpatrick’s model of teaching effectiveness' which has been published in MedEdPublish 2023, <b>13</b>:127 (https://doi.org/10.12688/mep.19692.1).
DOI: 10.17632/w89f52n7dx
title: The impact of skin disfigurement in patients with autoimmune connective tissue disorders on quality of life, willingness-to-pay, and time trade-off: a cross-sectional analysis

description: The impact of skin disfigurement in patients with autoimmune connective tissue disorders on quality of life, willingness-to-pay, and time trade-off: a cross-sectional analysis
DOI: 10.6084/m9.figshare.24124821.v1
title: Supplementary Material for: Renal outcomes in older adults with antineutrophil cytoplasmic autoantibody-associated vasculitis: a new prediction model

description: Introduction: Older patients with antineutrophil cytoplasmic autoantibody-associated vasculitis (AAV) commonly experience renal impairment and poor prognoses. This study aimed to establish a risk-scoring system for predicting composite renal outcomes in older patients with AAV. Methods: This retrospective observational study included all patients with AAV hospitalized in a single-center tertiary hospital in China between January 2013 and April 2022. Patients aged ≥ 65 years were defined as older adults, and short-term composite renal outcomes included a ≥ 25% reduction in eGFR (for AKI), renal replacement therapy, provision of renal replacement therapy (long-term dialysis, kidney transplant, or sustained eGFR &lt; 15 ml/min/1.73m), or all-cause mortality. Patients were randomly divided into development and validation cohorts (2:1). Logistic regression analysis was performed in the development cohort to analyze risk factors. The scoring system was established accordingly and further validated in the validation cohort. Results: 1203 patients were enrolled in the study, among whom the older adult group accounted for 36% with a mean age of 71 years. The older adult group had a worse prognosis, a higher mortality rate, a higher rate of end-stage renal disease, and worsening renal function. Logistic regression showed that age &gt; 75 years, chronic heart disease, and elevated serum creatinine and D-dimer values were risk factors for poor prognosis in patients with AAV. The development and validation cohorts in patients with AAV produced area under the curve values of 0.82 (0.78–0.86) and 0.83 (0.77–0.89), respectively. Conclusion: We established a risk-scoring system based on baseline clinical characteristics to predict composite renal outcomes in patients with AAV. Our results suggest that more attention should be paid to older patients with severe renal impairment and active inflammation.
DOI: 10.6084/m9.figshare.27691290.v1
title: A large fraction of soil microbial taxa is sensitive to experimental warming

description: Fighsare for GCB manuscript
DOI: 10.6084/m9.figshare.28695671.v1
title: Inverse Design to Capture Latent Real-space Topology in Aperiodic Systems Through Machine Learning

description: The file "Data" contains the datasets presented in the paper titled "Inverse Design to Capture Latent Real-space Topology in Aperiodic Systems Through Machine Learning". There are three folders named "Coupling_for_1D_IDA_model", "Coupling_for_2D_IDA_model", and "Experiments_with_disorders". The first one contains three sheets—"Initial_settings", "Frequency_customization", "Distribution_customization", which are the raw data for generating Figs. 2, 3, S6, and S7. The second one contains three sheets—"Initial_settings", "Frequency_customization", "Distribution_customization", which are the raw data for generating Figs. 5, S10, and S11. The third one contains the raw data from experiments for generating Fig.4c.<br>The file "Code" contains the related code of the paper titled " Inverse Design to Capture Latent Real-space Topology in Aperiodic Systems Through Machine Learning". There are six folders named "GDOA_1D", "GDOA_2D", "1D_original_spectral_localizer", "1D_reduced_spectral_localizer", "2D_original_spectral_localizer", and "Winding_number". The first one contains the codes for generating coupling in Figs. 2, 3, and Figs. S6, S7. The second one contains the codes for generating coupling in Fig. 5, and Figs. S10, S11. The third one contains the codes for generating Figs. 2j–2r. The fourth one contains the codes for generating Figs. 3g–3i, 3k–3m, 3o–3q, 3s–3u, and Figs. 5e, 5g, 5i. The fifth one contains the codes for generating Figs. S9b–S9d, S9f–S9h, and S9j–S9l. The sixth one contains the codes for generating Figs. 3f, 3j, 3n, and 3r.
DOI: 10.6084/m9.figshare.23789859.v1
title: Supplementary Material for: Large chromosome 2p duplication-associated mechanisms and clinical presentations

description: Chromosome 2p (chr2p) duplication, also known as trisomy 2p, is a rare chromosome abnormality associated with developmental delay, intellectual disability, behavioral problems, and distinctive facial features. Most of the reported cases involving trisomy 2p include additional copy number variants (CNVs) in other regions of the genome and are usually small in size. Little is known about the clinical outcomes of large duplications of chromosome 2p as the sole cytogenetic abnormality. In this study, 193 samples at the Greenwood Genetic Center (GGC) with CNVs involving chr2p were evaluated, out of which 86 had chromosome 2p duplications. Among them, eight patients were identified with large chromosome 2p duplications ranging in size from 9.3 Mb to 89 Mb, and no deletions or duplications involving other chromosomes were identified in those patients. These duplications were associated with inverted duplication, tandem duplication, and duplication as the result of translocation, with no additional CNVs identified by microarray analysis. Confirmation by conventional cytogenetics was performed in 7 of the 8 patients, and the translocations were confirmed by fluorescence in situ hybridization (FISH). Interestingly, one patient was found to have mosaic complete trisomy 2p as the result of an unbalanced de novo (X;2) chromosomal translocation. X-inactivation was skewed toward the derivative X chromosome, yet it did not appear to extend into the chromosome 2 material. Various shared clinical manifestations were observed in the individuals in this study, including developmental delay, hemifacial hypoplasia, cleft palate, and short stature, and they also have distinct features such as hypotonia, cerebellar hypogenesis, and corpus callosum agenesis, which might result from a gene dosage effect of the duplication. In conclusion, single-event large chromosome 2p duplications can result from different mechanisms, including inverted or tandem duplications within chromosome 2, or translocations involving chromosome 2 and other chromosomes. Partial or complete trisomy 2p is commonly associated with developmental delay, and additional clinical features may be related to gene dosage effects.
DOI: 10.6084/m9.figshare.4736602.v1
title: Link between alcohol and cancer as reported in Australian newsprint media

description: Summative content (descriptive) analysis of 1502 Australian newspaper articles featuring link between alcohol and cancer, published between 1-1-2005 and 31-12-2013; articles downloaded from Dow Jones Factiva database. Articles coded in excel spreadsheet for date, type of newspaper, location of article with claim of link between alcohol and cancer in paper, and claim within the article; nature of claim; plus, article focus, headline, word-count, descriptors of alcohol, descriptors of cancer, and information sources cited.  <br>
DOI: 10.6084/m9.figshare.4978298.v1
title: Reanalysis of the phylogenetic status of <i>Nipponosaurus sachalinensis</i> (Ornithopoda: Dinosauria) from the Late Cretaceous of Southern Sakhalin

description: <i>Nipponosaurus sachalinensis</i> is the only definitive lambeosaurine hadrosaurid from Sakhalin Island of Russia. Previous studies suggested it was a member of Lambeosaurini (derived lambeosaurines). However, its phylogenetic status within Lambeosaurini remains controversial. In addition, some studies argued the juvenile ontogenetic stage of the holotype and regarded <i>Nipponosaurus</i> as an invalid taxon. In order to solve these problems, its definite growth stage is determined through histological studies. Absence of a line of arrested growth, presence of osteons with large vascular spaces, and presence of primary bone remnants even in the highly modified regions of the femur confirm that the holotype was a juvenile. More than a hundred of the 350 characters used to determine the phylogenetic position of <i>Nipponosaurus</i> are ontogenetically variable characters based on the different ontogenetic stages of <i>Hypacrosaurus stebingeri</i>. Our phylogenetic analysis reveals that <i>Nipponosaurus</i> is a basal lambeosaurine hadrosaurid, much further down in the tree than previously suggested, and shows a polytomy with <i>Blasisaurus</i> and <i>Arenyisaurus</i>. This study also indicates that <i>Nipponosaurus</i> is a valid taxon because it possesses unique characters within the Lambeosaurinae (presence of massive surangular anterodorsal process, presence of lateral shelf of the dentary, and a relatively short ulna), which are independent of ontogeny.
DOI: 10.6084/m9.figshare.24310096.v1
title: Supplementary Material for: Association of chronic kidney disease with cardiovascular disease in cancer patients: a cross-sectional study

description: Introduction: Due to the cardiotoxicity of cancer treatment and traditional risk factors for cardiovascular disease (CVD) such as obesity, diabetes, dyslipidemia, and hypertension, cancer patients are at higher risk of developing CVD. However, limited research exists on the correlation between chronic kidney disease (CKD) and CVD risk in cancer patients. Methods: This cross-sectional study selected cancer patients aged ≥20 years from the National Health and Nutrition Examination Survey (NHANES) conducted from 2015 to 2020. Multivariable logistic regression was used to assess the association between CKD and CVD in cancer patients. Additionally, subgroup analyses were conducted to investigate the association among different groups of cancer patients. Results: We included 1700 adult cancer patients (52.53% were female). After multivariable adjustment for covariates including traditional CVD factors, CKD was significantly associated with CVD, with an odds ratio (95% confidence interval) and P-value of 1.61(1.18,2.19) and 0.004. Subgroup analyses after multivariable adjustment showed a significant correlation between CKD and increased CVD risk in the following populations: age ≥60 years, males, White ethnicity, and individuals with or without traditional CVD factors (obesity, diabetes, dyslipidemia, and hypertension). Conclusions: CKD remains a significant factor in the higher risk of CVD among adult cancer patients in the United States, even after adjustment for traditional CVD risk factors. Therefore, to reduce the risk of CVD in cancer patients, it is important to treat CKD as a non-traditional risk factor for CVD and actively manage it.
DOI: 10.6084/m9.figshare.24325073.v1
title: Potential intensification of permafrost carbon feedback under net-zero and negative emissions

description: Using the CESM2 model, a simulated dataset was created to investigate the response of the permafrost carbon cycle to net-zero and negative emissions through an emission-driven carbon dioxide removal simulation in the study titled <i>"</i><i>Potential intensification of permafrost carbon feedback under net-zero and negative emissions</i><i>".</i>
DOI: 10.6084/m9.figshare.27939912.v1
title: InterProScan

description: InterProScan structural annotation of <i>Laternula elliptica</i> proteins.
DOI: 10.6084/m9.figshare.5121511.v1
title: Supplementary Material for: BMP-2 and TGFβ2 Shared Pathways Regulate Endocardial Cell Transformation

description: Valvular heart disease is a major cause of mortality and morbidity. Revealing the cellular processes and molecules that regulate valve formation and remodeling is required to develop effective therapies. A key step in valve formation during heart development is the epithelial-mesenchymal transformation (EMT) of a subpopulation of endocardial cells in the atrioventricular cushion (AVC). The type III transforming growth factor-β receptor (TGFβR3) regulates AVC endocardial cell EMT in vitro and mesenchymal cell differentiation in vivo. Little is known concerning the signaling mechanisms downstream of TGFβR3. Here we use endocardial cell EMT in vitro to determine the role of 2 well-characterized downstream TGFβ signaling pathways in TGFβR3-dependent endocardial cell EMT. Targeting of Smad4, the common mediator Smad, demonstrated that Smad signaling is required for EMT in the AVC and TGFβR3-dependent EMT stimulated by TGFβ2 or BMP-2. Although we show that Smads 1, 2, 3, and 5 are required for AVC EMT, overexpression of Smad1 or Smad3 is not sufficient to induce EMT. Consistent with the activation of the Par6/Smurf1 pathway downstream of TGFβR3, targeting ALK5, Par6, or Smurf1 significantly inhibited EMT in response to either TGFβ2 or BMP-2. The requirement for ALK5 activity, Par6, and Smurf1 for TGFβR3-dependent endocardial cell EMT is consistent with the documented role of this pathway in the dissolution of tight junctions. Taken together, our data demonstrate that TGFβR3-dependent endocardial cell EMT stimulated by either TGFβ2 or BMP-2 requires Smad4 and the activation of the Par6/Smurf1 pathway.
DOI: 10.6084/m9.figshare.28883036.v1
title: PROTOCOLO CLÍNICO DE ATENCIÓN A LAS PERSONAS CON ENFERMEDAD PULMONAR POST-TUBERCULOSIS EN EL PERÚ

description: Registros exportados a Microsoft Excel y distribuidos a los grupos temáticos correspondientes para la selección de los documentos elegibles.
DOI: 10.6084/m9.figshare.26416843.v1
title: Adulterated dietary supplements commercialized in Brazil: development of a screening method and a preliminary study of cytotoxicity

description: The high consumption of dietary supplements was a fundamental driver for the creation of the regulatory framework by the Brazilian governmental authorities. However, the regulatory agencies lack official low-cost methodologies to evaluate the quality of food supplements. A preliminary screening method by HPLC-DAD was proposed and validated for screening and quantification of adulterants in dietary supplements. The limits of detection and quantification were &lt;0.11 and 0.37 µg.g<sup>−1</sup>, respectively. The method was applied for the investigation of ten unauthorized substances (spironolactone, hydrochlorothiazide, furosemide, clenbuterol, testosterone, testosterone propionate, yohimbine, vardenafil, tadalafil, and sildenafil) with a time of analysis of &lt;5 min. Sixteen percent of the 44 samples analyzed had at least one adulterant at or above therapeutic concentrations. Subsequently, <i>in vitro</i> evaluations were performed of the potential cytotoxicity to evaluate the cell viability, DNA damage, determination of nitric oxide levels, and quantification of reactive oxygen species. Despite the necessity of further studies, the results indicate a relationship between the presence of adulterants in food supplements and a potential cytotoxic effect.
DOI: 10.6084/m9.figshare.28130015.v1
title: Data File S1

description: Individual data points underlying all plotted figures.
DOI: 10.6084/m9.figshare.7369304.v1
title: Additional file 5: of Seedless mutant ‘Wuzi Ougan’ (Citrus suavissima Hort. ex Tanaka ‘seedless’) and the wild type were compared by iTRAQ-based quantitative proteomics and integratedly analyzed with transcriptome to improve understanding of male sterility

description: Table S5. Integrated_Table_mRNA_protein_Anno. (XLSX 999 kb)
DOI: 10.17632/7vc3vndc3r
title: Supplementary Material from Caroline Kothe's thesis

description: Additional tables for each article added to Caroline Isabel Kothe's thesis manuscript (Publication 1 - 7)
DOI: 10.6084/m9.figshare.25347538.v2
title: Dataset for "Generation and Impacts of Whistler-mode Waves during Energetic Electron Injections in Jupiter’s Outer Radiation Belt"

description: This is the dataset for.the paper "Generation and Impacts of Whistler-mode Waves during Energetic Electron Injections in Jupiter’s Outer Radiation Belt" submitted to Journal of Geophysical Research: Space Physics.Energetic particle injections are commonly observed in Jupiter’s magnetosphere and have important impacts on the radiation belts. We evaluate the roles of electron injections in the dynamics of whistler-mode waves and relativistic electrons using Juno measurements and wave-particle interaction modeling. The Juno spacecraft observed injected electron flux bursts at energies up to 300 keV at M shell ~11 near the magnetic equator during perijove-31. The electron injections are correlated with chorus wave bursts at 0.05-0.5 fce frequencies, where fce is the electron gyrofrequency. The electron pitch angle distributions are anisotropic, peaking near 90° pitch angle, and the fluxes are high during injections. We calculate the whistler-mode wave growth rates using the observed electron distributions and linear theory. The frequency spectrum of the wave growth rate is consistent with that of the observed chorus magnetic intensity, suggesting that the observed electron injections provide free energy to generate whistler-mode chorus waves. We further use quasilinear theory to model the impacts of chorus waves on 0.1-10 MeV electrons. Our modeling shows that the chorus waves could cause the pitch angle scattering loss of electrons at &lt;1 MeV energies and accelerate relativistic electrons at multiple MeV energies in Jupiter’s outer radiation belt. The electron injections also provide an important seed population at several hundred keV energies to support the acceleration to higher energies. Our wave-particle interaction modeling demonstrates the energy flow from the electron injections to the relativistic electron population through the medium of whistler-mode waves in Jupiter's outer radiation belt.
DOI: 10.6084/m9.figshare.3529958.v1
title: Appendix B. Mathematical details.

description: Mathematical details.
DOI: 10.6084/m9.figshare.13061270.v1
title: Gesticulator: 3D coordinates for the comparisons with the baseline study

description: 3D coordinates of all the motions used in the comparisons of the proposed method with the baseline model for the ICMI 2020 paper: "Gesticulator: A framework for semantically-aware speech-driven gesture generation"<br>
DOI: 10.6084/m9.figshare.28425257.v1
title: rumen microorganisms

description: ruminal dominant microorganisms
DOI: 10.17632/jf5bf26jcj
title: Unlocking massively parallel spectral proper orthogonal decompositions in the PySPOD package

description: We propose a parallel (distributed) version of the spectral proper orthogonal decomposition (SPOD) technique. The parallel SPOD algorithm distributes the spatial dimension of the dataset preserving time. This approach is adopted to preserve the non-distributed fast Fourier transform of the data in time, thereby avoiding the associated bottlenecks. The parallel SPOD algorithm is implemented in the PySPOD library and makes use of the standard message passing interface (MPI) library, implemented in Python via mpi4py. An extensive performance evaluation of the parallel package is provided, including strong and weak scalability analyses. The open-source library allows the analysis of large datasets of interest across the scientific community. Here, we present applications in fluid dynamics and geophysics, that are extremely difficult (if not impossible) to achieve without a parallel algorithm. This work opens the path toward modal analyses of big quasi-stationary data, helping to uncover new unexplored spatio-temporal patterns.
DOI: 10.4121/19354100.v1
title: FTIR data sheet, Mechanical Properties and Ph Adaptability Data for Hydroxyapatite (HAp) Samples

description: Hydroxyapatite for bone remodelling