cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.effdfu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Aplonis panayensis)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015838-250717081556266/datasets/export for details.
DOI: 10.15468/dl.hncxe2
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Noemacheilus savona"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015839-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrb25m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella",
 "Country is Ethiopia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015840-250717081556266/datasets/export for details.
DOI: 10.15468/dl.cykswx
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gambusia holbrooki",
 "Country is Solomon Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015841-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdxvqc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pycnonotus goiavier)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015844-250717081556266/datasets/export for details.
DOI: 10.15468/dl.te2nja
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pycnonotus goiavier)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015845-250717081556266/datasets/export for details.
DOI: 10.15468/dl.6yjucv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACY9555"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015846-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3pf4tm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pycnonotus goiavier)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015847-250717081556266/datasets/export for details.
DOI: 10.15468/dl.mwcyqt
title: Occurrence Download

description: A dataset containing 5730 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gambusia holbrooki",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5730 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015849-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sanejm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015848-250717081556266/datasets/export for details.
DOI: 10.15468/dl.4nm6rv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pycnonotus goiavier)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015850-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udxkfy
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schistura scaturigina"
 ]
}

 The dataset includes 22 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015851-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13738980
title: Bioactivity deep learning for structure-free compound-protein interaction

description: CPI2M data for "Bioactivity deep learning for structure-free compound-protein interaction".

CPI2M_main_Ki.csv: Bioactivity data with pKi activity type. Used for model training and internal validation.

CPI2M_main_Kd.csv: Bioactivity data with pKd activity type. Used for model training and internal validation.

CPI2M_main_EC50.csv: Bioactivity data with pEC50 activity type. Used for model training and internal validation.

CPI2M_main_IC50.csv: Bioactivity data with pIC50 activity type. Used for model training and internal validation.

CPI2M_few_Ki.csv: Bioactivity data with pKi activity type. Used for external validation.

CPI2M_few_Kd.csv: Bioactivity data with pKd activity type. Used for external validation.

CPI2M_few_EC50.csv: Bioactivity data with pEC50 activity type. Used for external validation.

CPI2M_few_IC50.csv: Bioactivity data with pIC50 activity type. Used for external validation.

potency.csv: BIoactivity data with pPotency activity type. Not used currently but can be potentially adopted as classification data for customized use.

percentage.csv: BIoactivity data with Percentage Inhibition activity type. Not used currently but can be potentially adopted as classification data for customized use.

Protein_pretrained_feat.zip: pre-calculated protein feature files with UniProt ID naming. Should be unzipped before start model training with CPI2M data.

 

For each .csv data, columns include "smiles" (ligand SMILES), "exp_mean" (nM bioactivity), "y" (neg.log nM, final label), "cliff_mol" (whether activity cliff or not), "split" (splitting label by activity cliff), "Uniprot_id" (UniProt ID for protein), "Sequence" (wildtype sequence for protein), and "type_id" (bioactivity type token, pKi =0, pKd=1, pEC50=2, pIC50=3).

 

Please find the project code at https://github.com/gu-yaowen/GGAP-CPI
DOI: 10.5281/zenodo.15789422
title: Bioactivity deep learning for structure-free compound-protein interaction

description: CPI2M data for "Bioactivity deep learning for structure-free compound-protein interaction".

CPI2M_main_Ki.csv: Bioactivity data with pKi activity type. Used for model training and internal validation.

CPI2M_main_Kd.csv: Bioactivity data with pKd activity type. Used for model training and internal validation.

CPI2M_main_EC50.csv: Bioactivity data with pEC50 activity type. Used for model training and internal validation.

CPI2M_main_IC50.csv: Bioactivity data with pIC50 activity type. Used for model training and internal validation.

CPI2M_few_Ki.csv: Bioactivity data with pKi activity type. Used for external validation.

CPI2M_few_Kd.csv: Bioactivity data with pKd activity type. Used for external validation.

CPI2M_few_EC50.csv: Bioactivity data with pEC50 activity type. Used for external validation.

CPI2M_few_IC50.csv: Bioactivity data with pIC50 activity type. Used for external validation.

potency.csv: BIoactivity data with pPotency activity type. Not used currently but can be potentially adopted as classification data for customized use.

percentage.csv: BIoactivity data with Percentage Inhibition activity type. Not used currently but can be potentially adopted as classification data for customized use.

Protein_pretrained_feat.zip: pre-calculated protein feature files with UniProt ID naming. Should be unzipped before start model training with CPI2M data.

 

For each .csv data, columns include "smiles" (ligand SMILES), "exp_mean" (nM bioactivity), "y" (neg.log nM, final label), "cliff_mol" (whether activity cliff or not), "split" (splitting label by activity cliff), "Uniprot_id" (UniProt ID for protein), "Sequence" (wildtype sequence for protein), and "type_id" (bioactivity type token, pKi =0, pKd=1, pEC50=2, pIC50=3).

 

Please find the project code at https://github.com/gu-yaowen/GGAP-CPI
DOI: 10.15468/dl.nsxvyd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015852-250717081556266/datasets/export for details.
DOI: 10.15468/dl.vyv4ck
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gambusia holbrooki",
 "Country is Sudan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015853-250717081556266/datasets/export for details.
DOI: 10.15468/dl.3qhjyk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Noemacheilus scaturigina"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015854-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w9uau8
title: Occurrence Download

description: A dataset containing 55800 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lycalopex culpaeus"
 ]
}

 The dataset includes 55800 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015833-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjbfwh
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nemacheilus scaturigina"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015856-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gc8u5d
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 221 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015857-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcrvh7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gambusia holbrooki",
 "Country is Tajikistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015858-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvk536
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AED9248"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015859-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7hjn7k
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gambusia holbrooki",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 71 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015861-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5jgwh
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 238 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015860-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byrv6h
title: Occurrence Download

description: A dataset containing 181186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pycnonotus goiavier)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 181186 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015842-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yhfhg9
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schizodon vittatus"
 ]
}

 The dataset includes 224 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015862-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxqc5h
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015864-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ah52sh
title: Occurrence Download

description: A dataset containing 4099 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paguma larvata",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4099 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015863-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hmyaer
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gambusia holbrooki",
 "Country is Turkmenistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015865-250717081556266/datasets/export for details.
DOI: 10.15468/dl.gk79xn
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACL3111"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015866-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nds9z4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pycnonotus goiavier)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015867-250717081556266/datasets/export for details.
DOI: 10.15468/dl.kk2gzt
title: Occurrence Download

description: A dataset containing 1860 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Procyon lotor",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1860 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015868-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qebp6e
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACL3594"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015869-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.