cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1088533.10fu
title: SH1088533.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1088534.10fu
title: SH1088534.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.qd4bqa
title: Occurrence Download

description: A dataset containing 790 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caroxylon vermiculatum (L.) Akhani & Roalson"
 ]
}

 The dataset includes 790 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021412-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6jz3t
title: Occurrence Download

description: A dataset containing 208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynoglossus joyneri Günther, 1878",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 208 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021413-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23vut2
title: Occurrence Download

description: A dataset containing 686 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prionotus roseus Jordan & Evermann, 1887",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 686 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021415-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d95ezy
title: Occurrence Download

description: A dataset containing 6763 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Siganus fuscescens (Houttuyn, 1782)"
 ]
}

 The dataset includes 6763 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021414-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gdp6up
title: Occurrence Download

description: A dataset containing 456 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apostichopus japonicus (Selenka, 1867)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 456 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021416-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjxqmj
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stichopus japonicus Selenka, 1867",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021418-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2ksn9
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coendou bicolor (Tschudi, 1844)"
 ]
}

 The dataset includes 96 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021419-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9y5aa9
title: Occurrence Download

description: A dataset containing 3663 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prionotus rubio Jordan, 1886",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3663 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021420-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uem3j2
title: Occurrence Download

description: A dataset containing 261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Doederleinia berycoides (Hilgendorf, 1879)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 261 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021421-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14286164
title: The animations described in "X-ray/Radio Quasi-periodic Pulsations Associated with Plasmoids in Solar Flare Current Sheets"

description: Movie S1: An animation of the AIA 171, 211, and 131 {\AA} images covers the first flare (C3.8). The top panels show a large field of view, while the lower panels display a zoomed-in view of the area outlined by the red box in the top panels. The animation runs from 07:51:37 UT to 08:26:01 UT. Its real-time duration is 5.7 s. 

Movie S2: The zoomed-in view of AIA 171 and 211 {\AA} animation depicts the plasma sheet and the ejection of multiple plasmoids during the first flare (C3.8). The right panels display the ORFESS radio dynamic spectrum (decimetric bursts) and Fermi GBM X-ray flux (6-12, 12-25, and 25-50 keV) during the first flare. The animation runs from 07:51:37 UT to 08:26:01 UT. Its real-time duration is 5.7 s. 

 Movie S3: The AIA 171, 211, and 131 {\AA} animation and the ORFESS radio dynamic spectrum Fermi GBM X-ray flux, and RHESSI images in the 6-12 keV channel during the first flare (C3.8). The animation runs from 08:10 UT to 08:20 UT. Its real-time duration is 2.2 s.  

Movie S4: An animation of the AIA 171, 211, and 131 {\AA} images covers the second flare (M1.1). The top panels show a large field of view, while the lower panels display a zoomed-in view of the area outlined by the red box in the top panels. The animation runs from 08:26:13 UT to 08:56:37 UT. Its real-time duration is 5.1 s.

Movie S5: The AIA 171, 211, and 131 {\AA} animation is shown in the left panels, while the right panels display the Fermi GBM X-ray flux (6-12 keV), GOES soft X-ray flux derivative (1-8~{\AA}), and RHESSI images in the 6-12 keV channel during the initiation of the second flare (M1.1). The animation runs from 08:26:25 UT to 08:33:37 UT. Its real-time duration is 3.8 s.\\

Movie S6: The first part of the animation shows a TD intensity plot along P1Q1  using AIA 211~{\AA} images and the associated e-Callisto radio dynamic spectrum (decimetric bursts) during the second flare (M1.1). The second part of the animation covers TD intensity plots along P2Q2 and P4Q4 using AIA 211~{\AA} images. The third part of the animation shows a TD intensity plot along slice P3Q3 using AIA 131~{\AA} images. The animation runs from 08:20 UT to 08:50 UT. Its real-time duration is 39 s.\\

Movie S7: The animations (a,b) show density (intensity and running difference) images from a 3D MHD simulation with ARMS, highlighting the formation and ejection of multiple plasmoids moving bidirectionally in the flare current sheet beneath an erupting flux rope. The animations run from t=12800-14195 s and real time duration is about 22 s.
DOI: 10.5281/zenodo.14286165
title: The animations described in "X-ray/Radio Quasi-periodic Pulsations Associated with Plasmoids in Solar Flare Current Sheets"

description: Movie S1: An animation of the AIA 171, 211, and 131 {\AA} images covers the first flare (C3.8). The top panels show a large field of view, while the lower panels display a zoomed-in view of the area outlined by the red box in the top panels. The animation runs from 07:51:37 UT to 08:26:01 UT. Its real-time duration is 5.7 s. 

Movie S2: The zoomed-in view of AIA 171 and 211 {\AA} animation depicts the plasma sheet and the ejection of multiple plasmoids during the first flare (C3.8). The right panels display the ORFESS radio dynamic spectrum (decimetric bursts) and Fermi GBM X-ray flux (6-12, 12-25, and 25-50 keV) during the first flare. The animation runs from 07:51:37 UT to 08:26:01 UT. Its real-time duration is 5.7 s. 

 Movie S3: The AIA 171, 211, and 131 {\AA} animation and the ORFESS radio dynamic spectrum Fermi GBM X-ray flux, and RHESSI images in the 6-12 keV channel during the first flare (C3.8). The animation runs from 08:10 UT to 08:20 UT. Its real-time duration is 2.2 s.  

Movie S4: An animation of the AIA 171, 211, and 131 {\AA} images covers the second flare (M1.1). The top panels show a large field of view, while the lower panels display a zoomed-in view of the area outlined by the red box in the top panels. The animation runs from 08:26:13 UT to 08:56:37 UT. Its real-time duration is 5.1 s.

Movie S5: The AIA 171, 211, and 131 {\AA} animation is shown in the left panels, while the right panels display the Fermi GBM X-ray flux (6-12 keV), GOES soft X-ray flux derivative (1-8~{\AA}), and RHESSI images in the 6-12 keV channel during the initiation of the second flare (M1.1). The animation runs from 08:26:25 UT to 08:33:37 UT. Its real-time duration is 3.8 s.\\

Movie S6: The first part of the animation shows a TD intensity plot along P1Q1  using AIA 211~{\AA} images and the associated e-Callisto radio dynamic spectrum (decimetric bursts) during the second flare (M1.1). The second part of the animation covers TD intensity plots along P2Q2 and P4Q4 using AIA 211~{\AA} images. The third part of the animation shows a TD intensity plot along slice P3Q3 using AIA 131~{\AA} images. The animation runs from 08:20 UT to 08:50 UT. Its real-time duration is 39 s.\\

Movie S7: The animations (a,b) show density (intensity and running difference) images from a 3D MHD simulation with ARMS, highlighting the formation and ejection of multiple plasmoids moving bidirectionally in the flare current sheet beneath an erupting flux rope. The animations run from t=12800-14195 s and real time duration is about 22 s.
DOI: 10.15468/dl.9jxctp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anthias berycoides Hilgendorf, 1879",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021422-241126133413365/datasets/export for details.
DOI: 10.15468/dl.xj7e9y
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-83.76152 -18.20772,-60.23848 -18.20772,-60.23848 -8.79228,-83.76152 -8.79228,-83.76152 -18.20772))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bistriopelma kiwicha Nicoletta, Chaparro, Mamani, Ochoa, West & Ferretti, 2020"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021417-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ad5sft
title: Occurrence Download

description: A dataset containing 1512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prionotus scitulus Jordan & Gilbert, 1882",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1512 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021423-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6kg7e
title: Occurrence Download

description: A dataset containing 428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sebastes inermis Cuvier, 1829",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 428 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021424-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vnn6tc
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Minous quincarinatus (Fowler, 1943)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 44 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021425-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.67m8fu
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fistularia petimba Lacepède, 1803",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 145 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021426-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdp3hd
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coendou melanurus (Wagner, 1842)"
 ]
}

 The dataset includes 35 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021427-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14281802
title: Applying Topic Modelling to the Folk Song Corpus of the Podillia Region

description: This dataset is based on Ukrainian folk songs from the Podillia region collections (Dei 1965; Yefremova & Dmytrenko 2014; Myshanych 1976). The text corpus comprises 2,762 songs, containing a total of 52,004 lines and 209,075 tokens.

The corpus of Podillia folk songs is in Ukrainian. It was analysed using the R programming language (version 4.4.1) along with RStudio (version: 2024.04.2+764).

The text analysis code was developed at the Estonian Literary Museum.

This dataset includes the following files:

1. TM_Ukr.folk_songs.R:  R script for the topic modeling analysis of the corpus. It covers text preprocessing, stopwords removal, tokenization, lemmatization, part-of-speech (PoS) tagging, document-term matrix (DTM) construction, latent Dirichlet allocation (LDA) analysis, coherence evaluation metrics, word embeddings using the GloVe algorithm, and K-means clustering.

2. corpus_Podillia_folk_songs.csv: A file containing the text data of Podillia region folk songs.
DOI: 10.5281/zenodo.14281803
title: Applying Topic Modelling to the Folk Song Corpus of the Podillia Region

description: This dataset is based on Ukrainian folk songs from the Podillia region collections (Dei 1965; Yefremova & Dmytrenko 2014; Myshanych 1976). The text corpus comprises 2,762 songs, containing a total of 52,004 lines and 209,075 tokens.

The corpus of Podillia folk songs is in Ukrainian. It was analysed using the R programming language (version 4.4.1) along with RStudio (version: 2024.04.2+764).

The text analysis code was developed at the Estonian Literary Museum.

This dataset includes the following files:

1. TM_Ukr.folk_songs.R:  R script for the topic modeling analysis of the corpus. It covers text preprocessing, stopwords removal, tokenization, lemmatization, part-of-speech (PoS) tagging, document-term matrix (DTM) construction, latent Dirichlet allocation (LDA) analysis, coherence evaluation metrics, word embeddings using the GloVe algorithm, and K-means clustering.

2. corpus_Podillia_folk_songs.csv: A file containing the text data of Podillia region folk songs.
DOI: 10.15468/dl.qfd2c5
title: Occurrence Download

description: A dataset containing 35894 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prionotus tribulus Cuvier, 1829",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 35894 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021428-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgfphy
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acetes japonicus Kishinouye, 1905",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 140 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021429-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13012/b2idb-8114408_v1
title: Redacted Dataset for Analyzing the Consistency of Retraction Indexing

description: This project investigates retraction indexing agreement among data sources: BCI, BIOABS, CCC, Compendex, Crossref, GEOBASE, MEDLINE, PubMed, Retraction Watch, Scopus, and Web of Science Core. Post-retraction citation may be partly due to authors’ and publishers' challenges in systematically identifying retracted publications. To investigate retraction indexing quality, we investigate the agreement in indexing retracted publications between 11 database sources, restricting to their coverage, resulting in a union list of 85,392 unique items. We also discuss common errors in indexing retracted publications. Our results reveal low retraction indexing agreement scores, indicating that databases widely disagree on indexing retracted publications they cover, leading to a lack of consistency in what publications are identified as retracted. Our findings highlight the need for clear and standard practices in the curation and management of retracted publications. 

Pipeline code to get the result files can be found in the GitHub repository
https://github.com/infoqualitylab/retraction-indexing-agreement in the ‘src’ file containing iPython notebooks:

The ‘unionlist_completed-ria_2024-07-09.csv’ file has been redacted to remove proprietary data, as noted below in README.txt. Among our sources, data is openly available only for Crossref, PubMed, and Retraction Watch.

FILE FORMATS:
1) unionlist_completed-ria_2024-07-09.csv - UTF-8 CSV file
2) README.txt - text file
DOI: 10.15468/dl.z2swgr
title: Occurrence Download

description: A dataset containing 1658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ruditapes philippinarum (A.Adams & Reeve, 1850)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1658 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021430-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3wmkha
title: Occurrence Download

description: A dataset containing 3932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudobatos lentiginosus (Garman, 1880)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3932 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021431-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xntuvp
title: Occurrence Download

description: A dataset containing 11854 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bulweria bulwerii (Jardine & Selby, 1828)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11854 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021432-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ed55z7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Procellaria bulwerii Jardine & Selby, 1828",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021433-241126133413365/datasets/export for details.
DOI: 10.15468/dl.akue6g
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atheresthes evermanni Jordan & Starks, 1904",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 110 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021434-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.