cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21524286
title: Meta-analysis of public RNA sequencing data of queens and workers in social Hymenoptera and termites

description: Table_S1: Datasets for meta-analysis of public RNA-sequencing data in eusocial insects <br> Table_S2: Number of transcripts translated into proteins in each species. <br> Table_S3: Gene expression ratios when comparing queens and workers (QW-ratio) <br> Table_S4: QW-score calculated based on the QW-ratio (212 genes were evaluated) <br> Table_S5: QW-score by species <br> Table_S6: QW-score calculated based on the QW-ratio (2595 genes were evaluated) <br> Table_S7: The reference genome and transcriptome used for quantifying the gene expression level <br> Figure_S1: Number of transcripts presented commonly across species. The blue bars indicate the number of transcripts that could be converted to Apis mellifera IDs for each species. The orange line indicates the number of transcripts that were commonly present when the expression ratio tables for each species were merged. Merging was done from left to right for the species listed. In the sequence similarity search, two protein sequence sets of Temnothorax longispinosus were used as listed in Table S6. One is the de novo assembled reference (<em>Temnothorax longispinosus1</em>) transcriptome, and the second was extracted from the genome information (<em>Temnothorax longispinosus2</em>). <br> Figure_S2: Scatter plots of QW-score (2595 genes were evaluated). This gene set was created using expression data from a subset of Temnothorax, Reticulitermes, and Macrotermes. Red plots indicate genes with high or low QW-score from the 212 gene set. <br> Supplemental_Discussion: Additional discussion of the genes identified in this study was described. <br> peptide.tar.gz: The files of amino acid sequences newly created for the present study <br> transcript.tar.gz: The files of transcript sequences newly created for the present study <br> <br>
DOI: 10.6084/m9.figshare.21524286.v5
title: Meta-analysis of public RNA sequencing data of queens and workers in social Hymenoptera and termites

description: Table_S1: Datasets for meta-analysis of public RNA-sequencing data in eusocial insects <br> Table_S2: Gene expression ratios when comparing queens and workers (QW-ratio) <br> Table_S3: QW-score calculated based on the QW-ratio (212 genes were evaluated) <br> Table_S4: QW-score by species <br> Table_S5: QW-score calculated based on the QW-ratio (2595 genes were evaluated) <br> Table_S6: The reference genome and transcriptome used for quantifying the gene expression level <br> Figure_S1: Number of transcripts presented commonly across species. The blue bars indicate the number of transcripts that could be converted to Apis mellifera IDs for each species. The orange line indicates the number of transcripts that were commonly present when the expression ratio tables for each species were merged. Merging was done from left to right for the species listed. In the sequence similarity search, two protein sequence sets of Temnothorax longispinosus were used as listed in Table S6. One is the de novo assembled reference (<em>Temnothorax longispinosus1</em>) transcriptome, and the second was extracted from the genome information (<em>Temnothorax longispinosus2</em>). <br> Figure_S2: Scatter plots of QW-score (2595 genes were evaluated). This gene set was created using expression data from a subset of Temnothorax, Reticulitermes, and Macrotermes. Red plots indicate genes with high or low QW-score from the 212 gene set. <br> Supplemental_Discussion: Additional discussion of the genes identified in this study was described. <br> peptide.tar.gz: The files of amino acid sequences newly created for the present study <br> transcript.tar.gz: The files of transcript sequences newly created for the present study <br> <br>
DOI: 10.5517/ccdc.csd.cc2bkbs1
title: CCDC 2161623: Experimental Crystal Structure Determination

description: Related Article: Shiyong Chen|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22559851
title: X-ray diffraction intensities of the hydrothermal ferromanganese oxides obtained from a petit-spot volcano

description: The dataset is the results of powder X-ray diffraction analysis (consisting of columns of degree of 2θ and X-ray diffraction intensity of each sample) for hydrothermal ferromanganese oxides obtained from a petit-spot volcano in western North Pacific Ocean. The analysis was performed using an Ultima IV instrument (Rigaku, Tokyo, Japan) at the University of Tokyo with CuKα radiation (40 kV and 30 mA) at the University of Tokyo. The scan range was 3°–75°(2θ) at a scan rate of 1°per minute. The mineral compositions of the samples are shown in the reference dataset (https://doi.org/10.6084/m9.figshare.22559803).
DOI: 10.6084/m9.figshare.22559590
title: Results of independent component analysis for the elemental mapping data of the hydrothermal ferromanganese oxides obtained from a petit-spot volcano

description: The dataset consists of IC (independent component) sores and IC loadings as the results of ICA (independent component analysis) on elemental mapping data of hydrothermal ferromanganese oxides obtained from a petit-spot volcano in the western North Pacific Ocean (https://doi.org/10.6084/m9.figshare.22559677). ICA was implemented using the “fastICA” function in the “fastICA” package developed for R software. The number of extracted ICs is 6.
DOI: 10.6084/m9.figshare.22559677
title: Elemental mapping data of the hydrothermal ferromanganese oxides obtained from a petit-spot volcano

description: The dataset consists of elemental mapping data of hydrothermal ferromanganese oxides (D05-20 and D05-21) obtained from a petit-spot volcano in the western North Pacific Ocean. The elemental mapping of Al, Ca, Cu, Fe, K, Mg, Mn, Ni, Rb, S, Si, and Zn was performed on polished cross sections of the samples using micro-XRF (XGT7000V, Horiba, Kyoto, Japan) with energy-dispersive X-ray spectroscopy at Kyoto University. The analysis was repeated 15 times at a tube voltage of 50 kV, a tube current of 0.9 A, and an X-ray beam diameter of 100 µm. Scanning was performed in ~75 µm intervals (pixel size) at a rate of 9 ms/pixel. The intensity was determined as the cumulative intensity of the 15 analyses (total analysis time = 135 ms/pixel).
DOI: 10.6084/m9.figshare.22559803
title: Chemical, mineral and Pb isotopic compositions of the hydrothermal ferromanganese oxides obtained from a petit-spot volcano and related materials

description: The dataset consists of the bulk chemical and mineral compositions of hydrothermal ferromanganese oxides obtained from a petit-spot volcano in the western North Pacific Ocean and Pb isotopic compositions of the hydrothermal ferromanganese oxides, present hydrogenetic ferromanganese crusts and lavas of petit-spot volcanoes in the western North Pacific Ocean. The bulk chemical analysis was performed using X-ray fluorescence spectrometry (Primus II, Rigaku, Tokyo, Japan) and inductively coupled plasma mass spectrometry (ICP–MS; iCAP-Q, Thermo Fisher Scientific, Bremen, Germany) at The University of Tokyo. Pb isotopic analysis was performed using a multicollector ICP–MS (Neptune Plus, Thermo Fisher Scientific, Bremen, Germany) at Chiba Institute of Technology. The details of the samples and the analytical methods are shown in the reference article.
DOI: 10.6084/m9.figshare.22566592
title: Table 1.tif

description: <strong>the profit functions of three pre-sale strategies</strong>
DOI: 10.21227/cchj-3f48
title: Transcription of Personal Pronoun (Lecture Note)

description:  Students learning the language must grasp the content from the lecture notes on personal pronouns in English. Our class note details personal pronouns' meaning, categories, and sentence usage. Also included are examples of appropriate and typical English use of pronouns.TRANSLATE with  x  EnglishArabicHebrewPolishBulgarianHindiPortugueseCatalanHmong DawRomanianChinese SimplifiedHungarianRussianChinese TraditionalIndonesianSlovakCzechItalianSlovenianDanishJapaneseSpanishDutchKlingonSwedishEnglishKoreanThaiEstonianLatvianTurkishFinnishLithuanianUkrainianFrenchMalayUrduGermanMalteseVietnameseGreekNorwegianWelshHaitian CreolePersian //        TRANSLATE with  COPY THE URL BELOW       Back  EMBED THE SNIPPET BELOW IN YOUR SITE  Enable collaborative features and customize widget: Bing Webmaster PortalBack//
DOI: 10.6084/m9.figshare.22566601
title: List of RNA-seq run files using larvae

description: List of RNA-seq run files using larvae
DOI: 10.6084/m9.figshare.22566601.v1
title: List of RNA-seq run files using larvae

description: List of RNA-seq run files using larvae
DOI: 10.6084/m9.figshare.22566610
title: Table 2.tif

description: When β=1, the profits of each strategy vary with C when a value is different
DOI: 10.6084/m9.figshare.22566610.v1
title: Table 2.tif

description: When β=1, the profits of each strategy vary with C when a value is different
DOI: 10.6084/m9.figshare.22566613
title: Table 3.tif

description: <strong>Table 3. When </strong> <strong>, the profits of each strategy vary with C when a value is different</strong>
DOI: 10.6084/m9.figshare.22566613.v1
title: Table 3.tif

description: <strong>Table 3. When </strong> <strong>, the profits of each strategy vary with C when a value is different</strong>
DOI: 10.5281/zenodo.7804233
title: Molecular Simulation Data Associated with the Manuscript "Function and dynamics of the intrinsically disordered carboxyl terminus of β2 adrenergic receptor"

description: Molecular Simulation Data Associated with the Manuscript<br> <br> "Function and dynamics of the intrinsically disordered carboxyl terminus of β2 adrenergic receptor"<br> <br> by Jie Heng, Yunfei Hu, Guillermo Pérez-Hernández, Asuka Inoue, Jiawei Zhao, Xiuyan Ma, Xiaoou Sun, Kouki Kawakami, Tatsuya Ikuta, Jienv Ding, Yujie Yang, Lujia Zhang, Sijia Peng, Xiaogang Niu, Hongwei Li, Ramon Guixà-González, Changwen Jin, Peter W. Hildebrand, Chunlai Chen & Brian K. Kobilka Nature Communications 2023, https://doi.org/10.1038/s41467-023-37233-1<br> <br> The representative molecular dynamics (MD) trajectories shown in the <strong>Supplementary Fig. 8,<br> Variable contacts of the β2AR CT</strong> can be 3D visualized in the browser in the following link: https://proteinformatics.uni-leipzig.de/mdsrv.html?load=file://base/B2CT/variants.ngl
description: {"references": ["Heng J. et al, Function and dynamics of the intrinsically disordered carboxyl terminus of \u03b22 adrenergic receptor, Nature Communications 2023"]}
DOI: 10.5281/zenodo.7804234
title: Molecular Simulation Data Associated with the Manuscript "Function and dynamics of the intrinsically disordered carboxyl terminus of β2 adrenergic receptor"

description: Molecular Simulation Data Associated with the Manuscript<br> <br> "Function and dynamics of the intrinsically disordered carboxyl terminus of β2 adrenergic receptor"<br> <br> by Jie Heng, Yunfei Hu, Guillermo Pérez-Hernández, Asuka Inoue, Jiawei Zhao, Xiuyan Ma, Xiaoou Sun, Kouki Kawakami, Tatsuya Ikuta, Jienv Ding, Yujie Yang, Lujia Zhang, Sijia Peng, Xiaogang Niu, Hongwei Li, Ramon Guixà-González, Changwen Jin, Peter W. Hildebrand, Chunlai Chen & Brian K. Kobilka Nature Communications 2023, https://doi.org/10.1038/s41467-023-37233-1<br> <br> The representative molecular dynamics (MD) trajectories shown in the <strong>Supplementary Fig. 8,<br> Variable contacts of the β2AR CT</strong> can be 3D visualized in the browser in the following link: http://proteinformatics.uni-leipzig.de/mdsrv.html?load=file://base/B2CT/variants.ngl
description: {"references": ["Heng J. et al, Function and dynamics of the intrinsically disordered carboxyl terminus of \u03b22 adrenergic receptor, Nature Communications 2023"]}
DOI: 10.5281/zenodo.7804343
title: Molecular Simulation Data Associated with the Manuscript "Function and dynamics of the intrinsically disordered carboxyl terminus of β2 adrenergic receptor"

description: Molecular Simulation Data Associated with the Manuscript<br> <br> "Function and dynamics of the intrinsically disordered carboxyl terminus of β2 adrenergic receptor"<br> <br> by Jie Heng, Yunfei Hu, Guillermo Pérez-Hernández, Asuka Inoue, Jiawei Zhao, Xiuyan Ma, Xiaoou Sun, Kouki Kawakami, Tatsuya Ikuta, Jienv Ding, Yujie Yang, Lujia Zhang, Sijia Peng, Xiaogang Niu, Hongwei Li, Ramon Guixà-González, Changwen Jin, Peter W. Hildebrand, Chunlai Chen & Brian K. Kobilka Nature Communications 2023, https://doi.org/10.1038/s41467-023-37233-1<br> <br> The representative molecular dynamics (MD) trajectories shown in the <strong>Supplementary Fig. 8,<br> Variable contacts of the β2AR CT</strong> can be 3D visualized in the browser in the following link: https://proteinformatics.uni-leipzig.de/mdsrv.html?load=file://base/B2CT/variants.ngl
description: {"references": ["Heng J. et al, Function and dynamics of the intrinsically disordered carboxyl terminus of \u03b22 adrenergic receptor, Nature Communications 2023"]}
DOI: 10.15151/esrf-es-1057333711
title: Structural Biology BAG - Portugal

description: The Portuguese MX BAG includes 13 PIs from three different institutions. Our research interests include soluble and membrane proteins of biomedical interest from humans or pathogenic organisms, several of which can be drug targets. Focus is also given to structural enzymology, aimed at the elucidation of reaction mechanisms, active sites, and inhibition tolerance in proteins with potential biotechnology applications. In several cases, complementary structural biology approaches are being used, combining MX with SAXS and, more recently, CryoEM.
DOI: 10.15151/esrf-es-1129664889
title: Structure of bassanite

description: single crystal x-ray diffraction of bassanite
DOI: 10.15151/esrf-es-1058387505
title: ITABAG: 3D structures of macromolecules related to human health

description: The ITABAG includes structural biologists from Universities, the National Research Council and Hospital research centres in Italy. The laboratories take advantage of single crystal and small angle X-ray diffraction methods to study the structure-function relationships in various macromolecules. A unifying factor for the vast majority of the macromolecules under study is that they are related to human health, either directly, being human proteins involved in some disease, or indirectly, as proteins expressed by human pathogens and validated as potential pharmacological targets. Other projects investigate basic chemical processes, such as crystal growth, or aim at characterising macromolecules with potential biotechnological applications.
DOI: 10.15151/esrf-es-1059291069
title: Austrian Crystallographic Diffraction Consortium

description: This proposed Austrian Crystallographic.... TO BE FILLED IN
DOI: 10.15151/esrf-es-1059388977
title: Berlin-Karlsruhe - Macromolecular Crystallography BAG - Structural Biology of light responsive, signal transducing and metalloproteins

description: The project aims to investigate structure-function relationships in different groups of soluble and membrane proteins, most of which are involved in signal transduction or energy conversion. We investigate the signalling mechanisms of phytochromes by focusing on the structures of the intermediates of the photocycle and by analysing domain movements or by introducing unnatural amino acids. We analyse the structures of different G protein-coupled receptors (GPCRs; e.g. melanocortin-4 receptor and rhodopsin), either alone or in complex with their cognate G-proteins, to understand their signalling mechanisms. In our work on the biocatalytic splitting of molecular hydrogen into protons and electrons, we analyse the membrane-bound and soluble [NiFe] hydrogenases, proteins of the remarkably small subgroup of hydrogenases that are active under aerobic conditions. Other research areas include mechanosensitive channels, microbial rhodopsins, cytomegalovirus proteins and DNA photolyases.
DOI: 10.15151/esrf-es-1059608775
title: Molecular machines in energy transduction, cellular signaling and defense processes

description: Since this BAG is composed of seven different working groups from three different locations (university of Cologne, university of Bochum, university of Düsseldorf), the projects for this proposal are of rather heterogeneous nature. Nonetheless, we are focusing on 5 main topics: 1.) proteins involved in transport processes, transporters or channels, either embedded in the membrane or acting in the cytosol (e.g. ABC transporters, fusion proteins, regulators) 2.) proteins involved in the immune system, pathogen invasion or defense/resistance processes (dehydratases, toxins, binding proteins) 3.) proteins involved or associated with diseases like cancer or developmental disorders (e.g. protein kinase, toxins, antibodies) 4.) enzymes of putative industrial use to encounter increasing environmental pollution (e.g. transaminases, estereases) 5.) proteins involved in light harvesting, photosynthesis (C3/C4 pathways) and chromophore binding proteins (e.g. synthases, photosensor domains)
DOI: 10.15151/esrf-es-1094081563
title: Structural and phase properties of zircon-thorite solid solutions under high pressure

description: Stability ranges and structural properties of Th0.25Zr0.75SiO4 will be established as a function of external pressure.
DOI: 10.15151/esrf-es-1105724169
title: Dynamics in hydrogenated metallic glasses

description: It is known that hydrogen can accelerate structural rearrangements in metallic glasses. Dynamics as a function of temperature will be measured at atomic length scales in hydrogenated metallic glasses around the structure factor peak using Wide-Angle X-ray Photon Correlation Spectroscopy.
DOI: 10.6084/m9.figshare.22389345
title: SI_Appendix_DatasetS5.xlsx from Changes of Cinchona distribution over the past two centuries in the northern Andes

description: The <i>Cinchona</i> genus is important for humanity due to its ethnobotanical properties, and in particular its ability to prevent and treat malaria. However, there have been historical changes of <i>Cinchona</i> distribution in the tropical Andes that remain undocumented. In the late eighteenth and early nineteenth centuries, several explorers recorded <i>Cinchona</i> precise localities in present-day Colombia and Ecuador, countries which harbour about half of the species of the genus, including <i>C. officinalis</i>. We compare historical and twentieth-century records to evaluate whether elevational ranges, mean elevation and latitude varied between the two periods. A large expansion of 662.5 m in average elevation for <i>Cinchona</i> and 792.5 m in elevational range for <i>C. officinalis</i> was found. These findings have implications for the conservation of economically important species and help us understand the impacts of the Anthropocene over time.
DOI: 10.6084/m9.figshare.22389345.v1
title: SI_Appendix_DatasetS5.xlsx from Changes of cinchona distribution over the past two centuries in the northern Andes

description: The <i>Cinchona</i> genus is important for humanity, due to its ethnobotanical properties, particularly its ability to prevent and treat malaria. However, historical changes of <i>Cinchona</i> distribution in the tropical Andes remain undocumented. In the late eighteenth and early nineteenth centuries, several explorers precisely recorded <i>Cinchona</i> localities in present-day Colombia and Ecuador, countries which harbour about half of the species of the genus, including <i>C. officinalis</i>. We compared historical and twentieth century records to evaluate whether elevational ranges, mean elevation and latitude varied between the two periods. A large expansion of 662.5/948.5 m in the average and elevational range for <i>C. officinalis</i> and 792.5 for <i>Cinchona</i> was obtained. These findings have implications for the conservation of economically important species and to understand the impacts of the Anthropocene over time.
DOI: 10.6084/m9.figshare.22389345.v2
title: SI_Appendix_DatasetS5.xlsx from Changes of Cinchona distribution over the past two centuries in the northern Andes

description: The <i>Cinchona</i> genus is important for humanity due to its ethnobotanical properties, and in particular its ability to prevent and treat malaria. However, there have been historical changes of <i>Cinchona</i> distribution in the tropical Andes that remain undocumented. In the late eighteenth and early nineteenth centuries, several explorers recorded <i>Cinchona</i> precise localities in present-day Colombia and Ecuador, countries which harbour about half of the species of the genus, including <i>C. officinalis</i>. We compare historical and twentieth-century records to evaluate whether elevational ranges, mean elevation and latitude varied between the two periods. A large expansion of 662.5 m in average elevation for <i>Cinchona</i> and 792.5 m in elevational range for <i>C. officinalis</i> was found. These findings have implications for the conservation of economically important species and help us understand the impacts of the Anthropocene over time.
DOI: 10.6084/m9.figshare.22389348
title: SI_Appendix_DatasetS1.xlsx from Changes of Cinchona distribution over the past two centuries in the northern Andes

description: The <i>Cinchona</i> genus is important for humanity due to its ethnobotanical properties, and in particular its ability to prevent and treat malaria. However, there have been historical changes of <i>Cinchona</i> distribution in the tropical Andes that remain undocumented. In the late eighteenth and early nineteenth centuries, several explorers recorded <i>Cinchona</i> precise localities in present-day Colombia and Ecuador, countries which harbour about half of the species of the genus, including <i>C. officinalis</i>. We compare historical and twentieth-century records to evaluate whether elevational ranges, mean elevation and latitude varied between the two periods. A large expansion of 662.5 m in average elevation for <i>Cinchona</i> and 792.5 m in elevational range for <i>C. officinalis</i> was found. These findings have implications for the conservation of economically important species and help us understand the impacts of the Anthropocene over time.
DOI: 10.6084/m9.figshare.22389348.v2
title: SI_Appendix_DatasetS1.xlsx from Changes of Cinchona distribution over the past two centuries in the northern Andes

description: The <i>Cinchona</i> genus is important for humanity due to its ethnobotanical properties, and in particular its ability to prevent and treat malaria. However, there have been historical changes of <i>Cinchona</i> distribution in the tropical Andes that remain undocumented. In the late eighteenth and early nineteenth centuries, several explorers recorded <i>Cinchona</i> precise localities in present-day Colombia and Ecuador, countries which harbour about half of the species of the genus, including <i>C. officinalis</i>. We compare historical and twentieth-century records to evaluate whether elevational ranges, mean elevation and latitude varied between the two periods. A large expansion of 662.5 m in average elevation for <i>Cinchona</i> and 792.5 m in elevational range for <i>C. officinalis</i> was found. These findings have implications for the conservation of economically important species and help us understand the impacts of the Anthropocene over time.