cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.key99z
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Afrixalus spinifrons (Cope, 1862)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.6306 -23.844,35.6007 -23.8125,35.6007 -24.0157,35.6306 -23.844))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033997-250525065834625/datasets/export for details.
DOI: 10.7910/dvn/p3nji5
title: Simulated Hourly Generation Data – SC

description: Probabilistic hourly generation and emissions data for SC, derived from U.S. EPA CAMPD.
DOI: 10.7910/dvn/fdhgrl
title: Facilities Data – SD

description: Facilities data for SD, derived from U.S. EPA CAMPD.
DOI: 10.7910/dvn/b59exd
title: Simulated Hourly Generation Data – SD

description: Probabilistic hourly generation and emissions data for SD, derived from U.S. EPA CAMPD.
DOI: 10.7910/dvn/cawg2n
title: Facilities Data – TN

description: Facilities data for TN, derived from U.S. EPA CAMPD.
DOI: 10.7910/dvn/wmuv4g
title: Simulated Hourly Generation Data – TN

description: Probabilistic hourly generation and emissions data for TN, derived from U.S. EPA CAMPD.
DOI: 10.7910/dvn/kcfnv0
title: Facilities Data – TX

description: Facilities data for TX, derived from U.S. EPA CAMPD.
DOI: 10.7910/dvn/1xzi8f
title: Simulated Hourly Generation Data – TX

description: Probabilistic hourly generation and emissions data for TX, derived from U.S. EPA CAMPD.
DOI: 10.5281/zenodo.15577520
title: ForceSMIP Tier 1 Data Repository

description: Data archive for Tier 1 of the ForceSMIP project, which is described in "Forced Component Estimation Statistical Method Intercomparison Project (ForceSMIP)" by Wills et al., submitted to Journal of Climate. Please cite that paper for any usage of this data. 

Types of data included here are:



Evaluation-Tier1: Raw data for 10* evaluation members, including reanalysis/observations (member "1I")

ensmeans-Tier1: The "true forced response", from the corresponding large ensemble mean, for the 9* evaluation members from models (all except "1I")

ForceSMIP-estimates-Tier1: ForcesSMIP method estimates of the forced response in each evaluation member


Each of these types of data is provided at monthly temporal resolution over 1950-2022, for each of 8* variables: tos (sea-surface temperature), tas (surface air temperature), pr (precipitation), psl (sea-level pressure), monmaxtasmax (monthly maximum daily maximum temperature), monmintasmin (monthly minimum daily minimum temperature), monmaxpr (monthly maximum daily precipitation), and zmta (zonal-mean atmospheric temperature).

*At the time of initial submission, only 6 of 10 evaluation members are included (the 5 unseen models and observations), and data is only provided for 3 out of 8 variables. The full dataset requires a Zenodo quota increase, which will be requested as the publication is finalized. Please also note that in this version, the "member" labels are swapped between the methods "RegGMST" and RegGMST-LENSem".
DOI: 10.6080/k01j97zn
title: Whole-brain recordings of adult Drosophila using light field microscopy along with corresponding behavior or stimuli data.
title: CRCNS.org fly-1

description: This dataset contains whole brain calcium or voltage recordings of adult Drosophila. They were recorded with light field microscopy, which permits ultra-fast whole-brain acquisition (up to 200Hz) albeit at lower spatial resolution than other techniques such as confocal microscopy. In some of the calcium data, the fly was behaving (mostly walking or grooming) and the behavior data is included. Other voltage and calcium datasets present response to stimuli (puffs of odor or flashes of UV light). 

One recording typically lasted one or two minutes. There are around 5 flies per condition. The whole brain fluorescence recordings are in NifTI format, and can be opened in ImageJ using the NifTI Input/Output plugin, with matlab using MRIread, or with python using nibabel (see scripts provided). Examples of alignment to an anatomical template, as well as results from source extraction using PCA/ICA are also provided.

See also a github repository: https://github.com/sophie63/FlyLFM, as well as a publication based on this dataset:
Fast near-whole brain imaging in adult Drosophila during responses to stimuli and behavior. Sophie Aimon, Takeo Katsuki, Tongqiu Jia, Logan Grosenick, Michael Broxton, Karl Deisseroth, Terrence J. Sejnowski, Ralph J Greenspan bioRxiv 033803; doi: https://doi.org/10.1101/033803
DOI: 10.6080/k0mg7mqw
title: Basal forebrain extracellular recordings of anesthetized mice with somatostatin positive neurons optogenetically inhibited. CRCNS.org.
title: CRCNS.org bf-2

description: Electrophysiological datasets were obtained from urethane anesthetized mice (mus musculus). These transgenic animals express halorhodopsin in somatostatin positive neurons and we used green light pulses (5s ON 15s OFF, 4 – 15 mW, 532 nm) to inhibit their electrical activity in the ventral pallidum (VP) and medial septum (MS). Four animals were used to acquire 20 recordings (32 channels) in the VP identified as “VP” files. Seven animals were used to gather 18 recordings in the MS (16 channels) and hippocampus (32 channels) simultaneously identified as “MS” dataset. Both VP and MS files were acquired with RHD2000 Evaluation System (Intan Technologies) at 20 kHz sampling rate. Each recording lasts 10 min and raw- and downsampled data (500 Hz) are available. We detected 330 neurons for VP and 1126 units for MS and hippocampus. Scripts to get started in data treatment and to replicate published figures are provided.
Results from VP recordings are described in:
“Basal Forebrain Gating by Somatostatin Neurons Drives Prefrontal Cortical Activity”. Espinosa N, Alonso A, Morales C, Espinosa P, Chávez AE, Fuentealba P. Cereb Cortex. 1-12 (Nov 2017) doi: 10.1093/cercor/bhx302.
Results from VP and MS recordings are currently being revised by Scientific Reports (Dec 2018) in a manuscript entitled “Basal forebrain somatostatin cells differentially regulate local gamma oscillations and functionally segregate motor and cognitive circuits”.
Behavioral datasets consist of videos showing the locomotive activity of MS mice in an open field and Y-maze tests with light pulses delivered during the tests.
DOI: 10.6080/k0s75dh3
title: Slice patch clamp recordings from GABAergic neurons in the Substantia Nigra pars reticulata (SNr) of Thy1-ChR2 mice during proximal and full-field optogenetic stimulation.
title: CRCNS.org snr-1

description: Raw data of slice patch clamp recordings of GABAergic neurons in the Substantia Nigra pars reticulata (SNr) of Thy1-ChR2 mice. In all experiments, SNr neurons were optogenetically stimulated using 470 nm LED light, while all glutamatergic and GABAergic inputs were pharmacologically blocked.
Experiments were repeated under two stimulation conditions:
a) Proximal stimulation targeting the soma and proximal dendrites (~130 um around the soma)
b) Full-field illumination exciting the soma as well as the entire dendritic arbor
Results from the experiments are described in:
Tiroshi, L. and Goldberg, J. A. (2018). Population dynamics and entrainment of basal ganglia pacemakers are shaped by their dendritic arbors.
https://www.biorxiv.org/content/early/2018/08/09/388504
DOI: 10.6080/k06h4fmz
title: Inscopix Annotated One-photon Calcium Imaging Datasets
title: CRCNS.org ix1p-1

description: This dataset contains one-photon calcium imaging recordings using Inscopix nVista v2 and v3, and nVoke1 microscopes. The recordings have been performed in a variety of awake behaving mice exploring an open field, and originate from hippocampus (CA1), dorsal striatum, pre-frontal cortex, parietal cortex, visual cortex, and somatosensory cortex. Cells from each recording have been manually annotated with ROIs, and these ROIs are also provided, which makes the dataset useful for testing the performance of cell identification algorithms. Mouse trajectory in an open field is included for a subset of the hippocampal and striatum data, which allows for place cell analysis in hippocampus and velocity decoding in striatum. Full behavioral movies are included for two striatum datasets, which can potentially be used for motion syllable detection.
DOI: 10.6080/k0sf2tdn
title: Extracellular single unit action potential spike trains recorded from the medial entorhinal cortex of freely-behaving rats performing place avoidance tasks in both a stable and continuously rotating arena
title: CRCNS.org hc-20

description: The data are extracellular single unit action potential, spike trains recorded from the medial entorhinal cortex region of freely-behaving rats. The recordings were made using tetrodes and the Axona dacqUSB recording system, while the rats performed place avoidance tasks in two conditions. One with the arena stable the other with the arena rotating continuously. Spike sorting was performed manually and single unit isolation quality was quantified using the IsoIBG and IsoINN measures (Neymotin et al., 2011).
Results from these data are reported in Park et al., (2018):
Park, E.H., Keeley, S., Savin, C., Ranck Jr., J.B., Fenton, A.A. (2018) How the internally-organized direction sense is used to navigate, Neuron, XX:XX-XX.
DOI: 10.6080/k0pn93t4
title: Extracellular recordings from rat hippocampal area CA1 during rest and exploration of a 3-arm maze along with results of real-time and offline detection of hippocampal replay content.
title: CRCNS.org hc-19

description: This data set was used in Ciliberti et al. (2018) to demonstrate and characterize the real-time detection of hippocampal memory replay events. The data set contains three daily sessions with tetrode recordings from hippocampal area CA1 in a single rat. In each session, the rat twice explored a 3-arm maze (RUN1 and RUN2), both before and after a short rest period (REST). Included in the data set are the raw data, the results of live detection of hippocampal replay events, and the results of offline analysis. Referenced paper is:
Real-time classification of experience-related ensemble spiking patterns for closed-loop applications.
Davide Ciliberti, Frédéric Michon and Fabian Kloosterman
eLife 2018 (in press)

No spike sorting was performed on the data, as we used a no-sort neural decoding approach (Kloosterman et al. 2014)
 for decoding the rat’s location on the maze and for analyzing hippocampal replay events. All analyses were performed
 in Python and code is available at: https://bitbucket.org/kloostermannerflab/ciliberti_elife2018_realtimereplay/.
 The software for real-time replay identification is part of the Falcon real-time neural processing
 framework (Ciliberti & Kloosterman, 2017) and can be found here: https://bitbucket.org/kloostermannerflab/falcon-server.
DOI: 10.6080/k02v2d9z
title: Extracellular recordings using an ultra-high density array from many brain areas of anesthetized rat
title: CRCNS.org hdr-1

description: Does the optimal size and density of electrodes depend on the brain region recorded? To help address this question, we collected a survey of recordings with an ultra-high density array of 255 extracellular electrodes (5 x 5 μm and spacing of 1 μm) during urethane anesthesia from many different rat brain areas (cortex, hippocampus, thalamus, cerebellum and striatum). 
Detailed information about the dataset is described in: 
Dimitriadis*, G., Neto*, J. P., Aarts, A., Alexandru, A., Ballini, M., Battaglia, F., … Kampff, A. R. (2018). Why not record from every channel with a CMOS scanning probe? bioRxiv, 275818. https://doi.org/10.1101/275818
DOI: 10.6080/k07m064m
title: Extracellular recordings using a dense electrode array allowing direct comparison of the same neural signal measured with low and high impedance electrodes
title: CRCNS.org evi-1

description: To help resolve whether the impedance of an electrode matters for recording neural activity with a modern polytrode, we collected a dataset in which neighboring electrodes within a dense array had a 10-fold difference in impedance (PEDOT-coated microelectrodes ~ 100 kΩ and uncoated microelectrodes ~ 1 MΩ). These recordings allow direct comparison of the same neural signal measured with a low and high impedance electrode. Extracellular recordings were obtained from the primary motor cortex (M1) and hippocampus CA1 of ketamine or urethane-anesthetized rats.
Detailed information about the dataset is described in: 
Neto, J. P., Baião, P., Lopes, G., Frazão, J., Nogueira, J., Fortunato, E., … Kampff, A. R. (2018). Does impedance matter when recording spikes with polytrodes? Frontiers in Neuroscience, 12, 715. http://doi.org/10.3389/fnins.2018.00715
DOI: 10.6080/k0cc0xw0
title: Polytrode extracellular recordings with paired juxtacellular recordings
title: CRCNS.org spe-2

description: Simultaneous extracellular and juxtacellular recordings were obtained from the cortex of ketamine-anesthetized rats (spontaneous activity). Extracellular recordings were carried either using polytrodes with 32 or 128 electrodes arranged in dense arrays.
Twenty-two neurons were recorded with a distance less than 200 µm between the juxtacellular pipette tip and the closest extracellular electrode. For each paired-recording, we provide the extracellular recording and the corresponding juxtacellular recording. 
Detailed information about the dataset is described in: 
Neto, J. P., Lopes, G., Frazão, J., Nogueira, J., Lacerda, P., Baião, P., … Kampff, A. R. (2016). Validating silicon polytrodes with paired juxtacellular recordings: method and dataset. Journal of Neurophysiology, 116(2), 892–903. http://doi.org/10.1152/jn.00103.2016
DOI: 10.6080/k07p8wkf
title: Extracellular recordings from areas MSTd and VIP of macaque monkeys during a heading discrimination task
title: CRCNS.org stc-1

description: This dataset contains neural recordings carried out from two different brain areas –
 dorsal Medial superior temporal cortex (MSTd) and ventral intraparietal cortex (VIP)
 – of eleven rhesus macaques. The data include recordings carried out using three different
 types of experiments: (1) Single-cell recordings during passive heading, (2) Single-cell
 recordings during active heading discrimination, and (3) Simultaneous recordings from pairs
 of neurons during passive heading. In each experiment, heading stimuli were delivered visually
 (optic flow) as well as vestibularly (platform). Experiment (2) contains an additional
 condition where we used a combination of visual and vestibular stimuli.
DOI: 10.6080/k0j67f4t
title: Simultaneous patch-clamp and dense CMOS probe extracellular recordings from the same cortical neuron in anaesthetized rats
title: CRCNS.org spe-1

description: In this dataset, we recorded simultaneously from the same cortical neuron using patch-clamp and extracellular (Neuropixel, 384 channel) probes, in urethane-anaesthetized rats (no stimulus, just spontaneous activity). A total of 43 neurons were recorded from in primary motor and somatosensory cortex. 38 neurons were recorded in cell-attached mode and 5 in whole-cell. Out of the 43 neurons that we patched, 21 showed clear extracellular spike waveforms, and for 10 of these the peak-peak amplitude exceeded 50 µV. For each neuron, we provide the raw extracellular recording file (action potential band, high-pass filtered at 300 Hz) and the corresponding patch-clamp recording, as well as sync channels for the two modalities, sample number for spike peaks in the patch-clamp recording, and corresponding sample numbers in the extracellular recording. Results from the experiments and detailed information about the dataset are described in:

Recording from the same neuron with high-density CMOS probes and patch-clamp: a ground-truth dataset and an experiment in collaboration.
André Marques-Smith, Joana Pereira Neto, Gonçalo Lopes, Joana Nogueira, Lorenza Calcaterra, João Frazão, Danbee Kim, Matthew G. Phillips, George Dimitriadis, Adam Kampff. bioRxiv 370080; doi: https://doi.org/10.1101/370080
DOI: 10.15468/dl.y8agqh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spirochaetia",
 "HasCoordinate is true",
 "Country is one of (Lithuania)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227715-210914110416597/datasets/export for details.
DOI: 10.15468/dl.4rx65f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spirochaetia",
 "HasCoordinate is true",
 "Country is one of (Lithuania)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227714-210914110416597/datasets/export for details.
DOI: 10.15468/dl.nw5g6y
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((57.32284 -20.50123,57.71551 -20.55505,57.83902 -20.34688,57.83216 -20.0406,57.53843 -19.94101,57.32284 -20.29526,57.32284 -20.50123))",
 "HasCoordinate is true",
 "TaxonKey is Ipomoea L."
 ]
}

 The dataset includes 176 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0123547-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tn2zun
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opitutae",
 "HasCoordinate is true",
 "Country is one of (Lithuania)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227718-210914110416597/datasets/export for details.
DOI: 10.15468/dl.ghe8fk
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.15152 2.41628,-74.67457 2.37036,-74.23436 5.50601,-77.6655 5.71378,-78.15152 2.41628))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Crocodylia"
 ]
}

 The dataset includes 133 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0123551-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6c9cy4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caldilineae",
 "HasCoordinate is true",
 "Country is one of (Lithuania)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227785-210914110416597/datasets/export for details.
DOI: 10.15468/dl.zq45xt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acidimicrobiia",
 "HasCoordinate is true",
 "Country is one of (Lithuania)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227729-210914110416597/datasets/export for details.
DOI: 10.15468/dl.g37q2s
title: Occurrence Download

description: A dataset containing 7858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.2638 4.39176,-75.19192 4.39176,-75.19192 5.39987,-76.2638 5.39987,-76.2638 4.39176))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 7858 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0123598-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wjp3dp
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Conyza bonariensis var. bonariensis"
 ]
}

 The dataset includes 234 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0123569-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fafz78
title: Occurrence Download

description: A dataset containing 52841 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos L.f., Cabomba caroliniana A.Gray, Cherax destructor Clark, 1936, Cotula coronopifolia L., Crassula helmsii (Kirk) Cockayne, Egeria densa Planch., Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Faxonius virilis (Hagen, 1870), Heracleum mantegazzianum Sommier & Levier, Heracleum persicum Desf. ex Fisch., C.A.Mey. & Avé-Lall., Heracleum sosnowskyi Manden., Houttuynia cordata Thunb., Hydrocotyle ranunculoides L.fil., Impatiens glandulifera Royle, Lagarosiphon major (Ridl.) Moss, Ludwigia grandiflora (Michx.) Greuter & Burdet, Ludwigia peploides (Kunth) P.H.Raven, Lysichiton americanus Hultén & H.St.John, Myriophyllum aquaticum (Vell.) Verdc., Myriophyllum heterophyllum Michx., Petasites japonicus (Siebold & Zucc.) Maxim., Pontederia cordata L., Procambarus acutus (Girard, 1852), Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Saururus cernuus L., Zizania latifolia (Griseb.) Stapf)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 52841 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227727-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uj5nqv
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Erigeron serranus (Cabrera)"
 ]
}

 The dataset includes 24 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0123585-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fn7s74
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubrobacteria",
 "HasCoordinate is true",
 "Country is one of (Lithuania)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0227741-210914110416597/datasets/export for details.
DOI: 10.15468/dl.cn33km
title: Occurrence Download

description: A dataset containing 780 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex planiculmis Kom."
 ]
}

 The dataset includes 780 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0123575-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.