cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5367940
title: Calculating the first-order kinetics of three coupled, reversible processes

description: Calculation of the concentration-time profile in four consecutive, well-mixed compartments that are connected by diffusional transport is a frequently occurring problem for chemists and engineers. Mathematically this is equivalent to many other problems such as the concentration profiles of a parent compound and its three consecutive reaction products resulting from reversible first-order kinetics. Here we present an analytical solution to this problem implemented in a Microsoft Excel spreadsheet (available for download) and we discuss various examples of how this simple-to-use tool can be applied to very different scenarios from various fields of science.
DOI: 10.6084/m9.figshare.5367940.v1
title: Calculating the first-order kinetics of three coupled, reversible processes

description: Calculation of the concentration-time profile in four consecutive, well-mixed compartments that are connected by diffusional transport is a frequently occurring problem for chemists and engineers. Mathematically this is equivalent to many other problems such as the concentration profiles of a parent compound and its three consecutive reaction products resulting from reversible first-order kinetics. Here we present an analytical solution to this problem implemented in a Microsoft Excel spreadsheet (available for download) and we discuss various examples of how this simple-to-use tool can be applied to very different scenarios from various fields of science.
DOI: 10.6084/m9.figshare.5367889
title: Arge bella sequence

description: <i>Arge bella</i> sequence
DOI: 10.6084/m9.figshare.5367880
title: Database of biological and geomorphological sea-level markers from the Last Glacial Maximum to the present (Hibbert et al., 2018, Scientific Data)

description: We compile sea-levels data from 194 studies from 40 locations using different biological and geomorphological archives (e.g., corals, mangroves, sediment cores) that have been radiometrically dated using either radiocarbon, or U-series techniques (or both) into a single, internally consistent database (~2,600 data points). <br><br> The new database is global in scope, and represents a first major step in establishing, and maintaining, a central, internally consistent archive of sea-level indicators for the interval from the last glacial maximum to the present (the last 25,000 years). This is the most recent interval of widespread destabilisation and disintegration of major continental ice sheets. The compilation therefore provides a suite of data beyond the range of modern variability with which to robustly test model-based simulations of polar ice-sheet collapse and extreme sea-level change.<br> We have ensured that all fields are fully documented, possess quantified uncertainties, and include all accompanying metadata. We also provide updated age estimates, recalculated where necessary using updated decay constants or calibration datasets, and sea-level reconstructions. Our harmonisation of the data, and inclusion of all metadata, ensures that disparate datasets may be compared, and that the data have continued utility into the future because everything is included to allow later re-evaluations if needed. The inclusion of all ‘raw’ data, and all available metadata furthermore allows each sea-level indicator to be viewed with its proper, fully expressed, uncertainties and geological context.
DOI: 10.6084/m9.figshare.5367457
title: Supplementary data for "Austromonticola, a new genus of broad-nosed weevil (Coleoptera, Curculionidae, Entiminae) from montane areas of New Zealand"

description: This fileset contains DNA alignments, analysis scripts and locality and morphological data associated with the taxonomic revision "<i>Austromonticola</i>, a new genus of broad-nosed weevil (Coleoptera: Curculionidae: Entiminae) from montane areas of New Zealand" (Brown SDJ (2017). ZooKeys. doi: 10.3897/zookeys.xx.xx.12649)<br><br><br><b>DNA alignment files in FASTA format:</b><br><i>coi.fasta</i>: 3' end of the cytochrome oxidase I mitochondrial gene (799 bp, 8 sequences)<br><i>coib.fasta</i>: 5' end ("barcoding region") of the cytochrome oxidase I mitochondrial gene (669 bp, 2 sequences)<br><i>28s.fasta</i>: D2-D3 region of 28S ribosomal RNA gene (756 bp, 9 sequences)<br><i>argk.fasta</i>: arginine kinase nuclear gene (715 bp, 6 sequences) <br><i>cad.fasta</i>: CAD nuclear gene (460 bp, 7 sequences)<br><br><b>Analysis scripts:<br></b><i>AustromonticolaMolecularDiagnostics.R</i>: Script file containing R code for creating the figures in the "Molecular Diagnostics" section of the paper.<b><br><br>Spreadsheet:<br></b><i>AustromonticolaData.csv</i>: comma separated table containing transcribed label data, georeferenced localities, and morphological data. Fields follow Darwin Core standards for geographic and label data. Morphological data fields are somewhat more idiosyncratic, but were intended to be self-explanatory.
DOI: 10.6084/m9.figshare.5367433
title: Synthetic.tar.xz

description: SYMREG ESP 5 different nonlinear warpage types applied to 5 different subjects
DOI: 10.6084/m9.figshare.5367889.v2
title: Arge bella sequence

description: <i>Arge bella</i> sequence
DOI: 10.6084/m9.figshare.5367433.v1
title: Synthetic.tar.xz

description: SYMREG ESP 5 different nonlinear warpage types applied to 5 different subjects
DOI: 10.6084/m9.figshare.5367457.v1
title: Supplementary data for "Austromonticola, a new genus of broad-nosed weevil (Coleoptera, Curculionidae, Entiminae) from montane areas of New Zealand"

description: This fileset contains DNA alignments, analysis scripts and locality and morphological data associated with the taxonomic revision "<i>Austromonticola</i>, a new genus of broad-nosed weevil (Coleoptera: Curculionidae: Entiminae) from montane areas of New Zealand" (Brown SDJ (2017). ZooKeys. doi: 10.3897/zookeys.xx.xx.12649)<br><br><br><b>DNA alignment files in FASTA format:</b><br><i>coi.fasta</i>: 3' end of the cytochrome oxidase I mitochondrial gene (799 bp, 8 sequences)<br><i>coib.fasta</i>: 5' end ("barcoding region") of the cytochrome oxidase I mitochondrial gene (669 bp, 2 sequences)<br><i>28s.fasta</i>: D2-D3 region of 28S ribosomal RNA gene (756 bp, 9 sequences)<br><i>argk.fasta</i>: arginine kinase nuclear gene (715 bp, 6 sequences) <br><i>cad.fasta</i>: CAD nuclear gene (460 bp, 7 sequences)<br><br><b>Analysis scripts:<br></b><i>AustromonticolaMolecularDiagnostics.R</i>: Script file containing R code for creating the figures in the "Molecular Diagnostics" section of the paper.<b><br><br>Spreadsheet:<br></b><i>AustromonticolaData.csv</i>: comma separated table containing transcribed label data, georeferenced localities, and morphological data. Fields follow Darwin Core standards for geographic and label data. Morphological data fields are somewhat more idiosyncratic, but were intended to be self-explanatory.
DOI: 10.6084/m9.figshare.5367889.v1
title: Arge bella sequence

description: <i>Arge bella</i> sequence
DOI: 10.6084/m9.figshare.5367880.v1
title: Database of biological and geomorphological sea-level markers from the Last Glacial Maximum to the present (Hibbet et al., 2018, Scientific Data)

description: We compile sea-levels data from 194 studies from 40 locations using different biological and geomorphological archives (e.g., corals, mangroves, sediment cores) that have been radiometrically dated using either radiocarbon, or U-series techniques (or both) into a single, internally consistent database (~2,600 data points). <br><br> The new database is global in scope, and represents a first major step in establishing, and maintaining, a central, internally consistent archive of sea-level indicators for the interval from the last glacial maximum to the present (the last 25,000 years). This is the most recent interval of widespread destabilisation and disintegration of major continental ice sheets. The compilation therefore provides a suite of data beyond the range of modern variability with which to robustly test model-based simulations of polar ice-sheet collapse and extreme sea-level change.<br> We have ensured that all fields are fully documented, possess quantified uncertainties, and include all accompanying metadata. We also provide updated age estimates, recalculated where necessary using updated decay constants or calibration datasets, and sea-level reconstructions. Our harmonisation of the data, and inclusion of all metadata, ensures that disparate datasets may be compared, and that the data have continued utility into the future because everything is included to allow later re-evaluations if needed. The inclusion of all ‘raw’ data, and all available metadata furthermore allows each sea-level indicator to be viewed with its proper, fully expressed, uncertainties and geological context.
DOI: 10.6084/m9.figshare.5367382
title: Fig.3 (PCR detection, all clones)

description: Specific PCR assay of all tested clones
DOI: 10.6084/m9.figshare.5367361
title: Fig. removed

description: Removed
DOI: 10.6084/m9.figshare.5367379
title: Fig removed

description: removed
DOI: 10.6084/m9.figshare.5367373
title: Fig. removed

description: Removed
DOI: 10.6084/m9.figshare.5367361.v1
title: Fig.5 (SIV + IFNb or IFNm)

description: 2016.06.16 293Tclones SIV IFNb & IFNm
DOI: 10.6084/m9.figshare.5367373.v1
title: Fig.5 (No virus + DMEM or IFNa)

description: 2016.06.16 293Tclones no virus DMEM & IFNa
DOI: 10.6084/m9.figshare.5367379.v1
title: Fig.5 (No virus + IFNb or IFNm)

description: 2016.06.16 293Tclones no virus IFNb & IFNm
DOI: 10.6084/m9.figshare.5367346
title: Fig. removed

description: removed
DOI: 10.6084/m9.figshare.5367349
title: Fig. removed

description: Removed
DOI: 10.6084/m9.figshare.5367355
title: Fig. removed

description: removed
DOI: 10.6084/m9.figshare.5367343
title: Fig.1C (N-MLV + IFNbeta or IFNomega)

description: 2016.06.16 N-MLV infection with IFNbeta or IFNomega pre-treatment.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367355.v1
title: Fig.5 (SIV + DMEM or IFNa)

description: 2016.06.16 293Tclones SIV DMEM & IFNa
DOI: 10.6084/m9.figshare.5367382.v1
title: Supp. Fig. 1 (PCR detection, all clones)

description: Specific PCR assay of all tested clones
DOI: 10.6084/m9.figshare.5367337
title: Fig.1C (N-MLV + DMEM or IFNalpha)

description: 2016.06.16 N-MLV infection with DMEM or IFNalpha pre-treatment.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367349.v1
title: Fig.5 (NL4.3 + IFNb or IFNm)

description: 2016.06.16 293Tclones NL4.3 IFNb & IFNm
DOI: 10.6084/m9.figshare.5367382.v3
title: Fig.3 (PCR detection, all clones)

description: Specific PCR assay of all tested clones
DOI: 10.6084/m9.figshare.5367331
title: Fig.1C (B-MLV + IFNbeta or IFNomega)

description: 2016.06.16 B-MLV infection with IFNbeta or IFNomega pre-treatment.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367325
title: Fig.1C (B-MLV + DMEM or IFNalpha)

description: 2016.06.16 B-MLV infection with DMEM or IFNalpha pre-treatment.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367343.v1
title: Fig.5 (N-MLV + IFNb or IFNm)

description: 2016.06.16 293Tclones N-MLV IFNb & IFNm
DOI: 10.6084/m9.figshare.5367382.v2
title: Fig.5 (PCR detection, all clones)

description: Specific PCR assay of all tested clones
DOI: 10.6084/m9.figshare.5367322
title: Fig. removed

description: Removed
DOI: 10.6084/m9.figshare.5367337.v1
title: Fig.5 (N-MLV + DMEM or IFNa)

description: 2016.06.16 293Tclones N-MLV DMEM & IFNa
DOI: 10.5281/zenodo.3997019
title: POPC:POPG 4:1 MD simulation with CHARMM36 in 0.1 M CaCL2 solution with Na+ counter ions

description: CHARMM36 POPC:POPG 4:1 bilayer simulation in 0.1 M CaCl2 solution. The initial structure was taken from CHARMM-GUI. Temperature is 298 K. The system contains 350 POPC, 88 POPG, 88 sodium ions, 26280 TIP3 water molecules, 47 Ca2+ ions and 94 Cl- ions. Total length of simulation is 400 ns. First 100 ns were discarded. Saving frequency of 100-300ns.xtc is 20 ps.
DOI: 10.6084/m9.figshare.5367319
title: Fig. removed

description: Removed
DOI: 10.6084/m9.figshare.5367331.v1
title: Fig.5 (B-MLV + IFNb or IFNm)

description: 2016.06.16 293Tclones B-MLV IFNb & IFNm
DOI: 10.6084/m9.figshare.5367343.v3
title: Fig.1C (N-MLV + IFNbeta or IFNomega)

description: 2016.06.16 N-MLV infection with IFNbeta or IFNomega pre-treatment.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367331.v3
title: Fig.1C (B-MLV + IFNbeta or IFNomega)

description: 2016.06.16 B-MLV infection with IFNbeta or IFNomega pre-treatment.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367343.v2
title: Fig.4C (N-MLV + IFNbeta or IFNomega)

description: 2016.06.16 N-MLV infection with IFNbeta or IFNomega pre-treatment.<br>See plate map for more infos.
DOI: 10.5281/zenodo.3997018
title: POPC:POPG 4:1 MD simulation with CHARMM36 in 0.1 M CaCL2 solution with Na+ counter ions

description: CHARMM36 POPC:POPG 4:1 bilayer simulation in 0.1 M CaCl2 solution. The initial structure was taken from CHARMM-GUI. Temperature is 298 K. The system contains 350 POPC, 88 POPG, 88 sodium ions, 26280 TIP3 water molecules, 47 Ca2+ ions and 94 Cl- ions. Total length of simulation is 400 ns. First 100 ns were discarded. Saving frequency of 100-300ns.xtc is 20 ps.
DOI: 10.6084/m9.figshare.5367316
title: Fig.1B1 (N-MLV infection)

description: 2016.05.12 - N-MLV infection of 293T clones.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367319.v1
title: Fig.4 (SIV infection)

description: 2016.05.12 - infection 6 doses SIVmac 293T clones GG
DOI: 10.6084/m9.figshare.5367331.v2
title: Fig.4C (B-MLV + IFNbeta or IFNomega)

description: 2016.06.16 B-MLV infection with IFNbeta or IFNomega pre-treatment.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367337.v3
title: Fig.1C (N-MLV + DMEM or IFNalpha)

description: 2016.06.16 N-MLV infection with DMEM or IFNalpha pre-treatment.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367325.v3
title: Fig.1C (B-MLV + DMEM or IFNalpha)

description: 2016.06.16 B-MLV infection with DMEM or IFNalpha pre-treatment.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367337.v2
title: Fig.4C (N-MLV + DMEM or IFNalpha)

description: 2016.06.16 N-MLV infection with DMEM or IFNalpha pre-treatment.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367289
title: Fig. removed

description: Removed
DOI: 10.6084/m9.figshare.5367325.v2
title: Fig.4C (B-MLV + DMEM or IFNalpha)

description: 2016.06.16 B-MLV infection with DMEM or IFNalpha pre-treatment.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367283
title: Fig. 1B1 (B-MLV infection)

description: 2016.05.12 B-MLV infection<br>See plate map for more info.<br>
DOI: 10.6084/m9.figshare.5367265
title: Fig. removed

description: Removed
DOI: 10.6084/m9.figshare.5367268
title: Fig. removed

description: removed
DOI: 10.6084/m9.figshare.5367262
title: Fig.5 (Illumina seq)

description: Illumina MiSeq sequencing data for each clones.
DOI: 10.6084/m9.figshare.5367265.v1
title: Fig.4 (NL4.3 infection part 1)

description: 2016.05.02 - infection 6 doses NL4.3-GFP 293T clones GG
DOI: 10.6084/m9.figshare.5367259
title: Fig.4 (PCR detection)

description: PCR detection of HDR clones by specific PCR for R332G-R335G or by HaeIII digestion
DOI: 10.6084/m9.figshare.5367316.v1
title: Fig.4 (N-MLV infection)

description: 2016.05.12 - N-MLV infection of 293T clones.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367256
title: Fig.2 (Surveyor)

description: Surveyor assay for three guide RNAs targeting near R332 and R335
DOI: 10.6084/m9.figshare.5367262.v2
title: Fig.5 (Illumina seq)

description: Illumina MiSeq sequencing data for each clones.
DOI: 10.6084/m9.figshare.5367316.v3
title: Fig.1B1 (N-MLV infection)

description: 2016.05.12 - N-MLV infection of 293T clones.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367283.v3
title: Fig. 1B1 (B-MLV infection)

description: 2016.05.12 B-MLV infection<br>See plate map for more info.<br>
DOI: 10.6084/m9.figshare.5367259.v2
title: Fig.4 (PCR detection)

description: PCR detection of HDR clones by specific PCR for R332G-R335G or by HaeIII digestion
DOI: 10.6084/m9.figshare.5367262.v1
title: Fig.3 (Illumina seq)

description: Illumina MiSeq sequencing data for each clones.
DOI: 10.6084/m9.figshare.5367256.v2
title: Fig.2 (Surveyor)

description: Surveyor assay for three guide RNAs targeting near R332 and R335
DOI: 10.6084/m9.figshare.5367259.v1
title: Fig.2 (PCR detection)

description: PCR detection of HDR clones by specific PCR for R332G-R335G or by HaeIII digestion
DOI: 10.6084/m9.figshare.5367283.v2
title: Fig. 4B1 (B-MLV infection)

description: 2016.05.12 B-MLV infection<br>See plate map for more info.<br>
DOI: 10.6084/m9.figshare.5367316.v2
title: Fig.4B1 (N-MLV infection)

description: 2016.05.12 - N-MLV infection of 293T clones.<br>See plate map for more infos.
DOI: 10.6084/m9.figshare.5367256.v1
title: Fig.1 (Surveyor)

description: Surveyor assay for three guide RNAs targeting near R332 and R335
DOI: 10.6084/m9.figshare.5367127
title: monkey_data.zip

description: "Rhesus macaques form preferences for brand logos through sex and social status based advertising" by Acikalin, Watson, Fitzsimons, and Platt.
DOI: 10.6084/m9.figshare.5364277
title: Pervasive presence of transgenes and glyphosate in maize-derived food in Mexico

description: In Mexico, the Center of origin and diversity of maize, a daily per capita average of 0.5 kg of maize-based foods are consumed. Approximately 10 million tons of maize is produced in small peasant holdings. Nevertheless, a greater proportion of industrially produced maize-derived products have started to appear in recent years. We traced the presence of transgenes and glyphosate in maize-based foods collected in Mexico and elsewhere as a means to describe the landscape of distribution, abundance, and types of transgenes in maize-derived food in Mexico. Transgenic sequences were present in overall 82% of assayed food categories; while the most widely form of maize consumption in Mexico, tortillas, had recombinant sequences in 90.4% of the samples. Furthermore, we found statistically indistinguishable frequency distributions of transgenes in samples from Mexico and other countries. Additionally, glyphosate was detected in approximately 27.7% of the samples rendered positive for transgenic events tolerant to this herbicide.
DOI: 10.6084/m9.figshare.5364268
title: Triatomines coordinates

description: Coordinates of presence used in: <b> Using ecophysiological traits to understand the Realized Niche: the role of desiccation tolerance in Chagas disease vectors. </b><b>de la Vega & Schilman, 2017.</b><b></b>were previously used by Fergnani et al. (2013) and de la Vega et al. (2015) (database mother was created by Rabinovich can be found in: http://dx.doi.org/10.6084/m9.figshare.653959).
DOI: 10.6084/m9.figshare.5364277.v1
title: Pervasive presence of transgenes and glyphosate in maize-derived food in Mexico

description: In Mexico, the Center of origin and diversity of maize, a daily per capita average of 0.5 kg of maize-based foods are consumed. Approximately 10 million tons of maize is produced in small peasant holdings. Nevertheless, a greater proportion of industrially produced maize-derived products have started to appear in recent years. We traced the presence of transgenes and glyphosate in maize-based foods collected in Mexico and elsewhere as a means to describe the landscape of distribution, abundance, and types of transgenes in maize-derived food in Mexico. Transgenic sequences were present in overall 82% of assayed food categories; while the most widely form of maize consumption in Mexico, tortillas, had recombinant sequences in 90.4% of the samples. Furthermore, we found statistically indistinguishable frequency distributions of transgenes in samples from Mexico and other countries. Additionally, glyphosate was detected in approximately 27.7% of the samples rendered positive for transgenic events tolerant to this herbicide.
DOI: 10.6084/m9.figshare.5364259
title: Utilizing External Features and a Consensus Field-Based Approach to Determine Sex of Lake Michigan Yellow Perch

description: Understanding fluctuations in population sex ratios is important for evaluating the effects of changes in population demographics and for making informed management decisions. The Yellow Perch <i>Perca flavescens</i>, an important sport fish in Lake Michigan, undergoes sexually dimorphic growth, likely resulting in differing vulnerabilities to angler harvest. However, sex ratio data from angler-harvested fish have not been collected because of the handling time and intrusiveness of the methods for distinguishing sexes. We utilized digital photographs of the urogenital papilla (UGP) from known-sex Yellow Perch to establish a method whereby UGP shape could be used to rapidly, accurately, and inexpensively determine the sex of Yellow Perch. Overall, 88.1% of Yellow Perch examined were assigned to the correct sex, and the sex ratio estimate of 48:87 (female : male) did not differ significantly from the known sex ratio of 46:89. Classification success was not affected by fish sex, TL, or month of collection. Our results demonstrate accurate, rapid, inexpensive, and nonlethal applicability of this method across a wide range of sizes and geographic and temporal scales. Applying this methodology will permit accurate sex ratio estimates for angler-harvested Yellow Perch, which can be used to better understand harvest composition and its implications for management. Received February 17, 2017; accepted June 9, 2017 Published online August 31, 2017
DOI: 10.6084/m9.figshare.5364265
title: EMS Dispatches during Hurricanes Irene and Sandy in New Jersey

description: <b>Background</b>: Hurricanes Irene and Sandy heavily impacted New Jersey. Investigating EMS dispatch trends during these storms may allow us to prepare for future disasters. <b>Objectives</b>: Our objectives to characterize the types of EMS dispatches immediately before, during, and after landfall compared to a control period. <b>Methods</b>: This retrospective study was conducted at a large EMS dispatch center that provides first responders, Basic Life Support (BLS), Advanced Life Support (ALS), and critical care transport services to an area with approximately 20 receiving hospitals including a Level I Trauma Center. At peak staffing, there are 8–10 ALS vehicles, 25 BLS vehicles, and 3 critical care transport vehicles deployed. We included of the day of landfall and seven days before and after. We compared dispatch data to a control period in 2010 that mirrored Hurricane Sandy the dates of. Descriptive statistics and two way ANOVA were used to assess dispatch, gender and age differences. <b>Results</b>: We found Hurricane Sandy dispatches peaked 2 days after landfall. Both ALS and BLS had an increase in age in the post-Sandy period compared to the pre-Sandy (ALS 58.5 to 64.2, p = 0.005, ANOVA p = 0.078; BLS 47.4 to 56.3, p &lt; 0.001, ANOVA p = 0.001). There were 17 “hurricane related” (loss of power related issues, oxygen supply depleted, evacuation) and 15 carbon monoxide dispatches in the post-Sandy period and none in the others, including peri-Irene. The average age of cardiac arrest dispatches was lower in the post-Irene group compared to pre-Irene (74.3 to 47.8, p = 0.023). There were no critical care requests before or after Hurricane Sandy, but there were 14 around Hurricane Irene and 10 surrounding the control period. <b>Conclusions</b>: Dispatch data can inform natural disaster planning. Education efforts can focus on geriatric patients, as well as resource distribution planning for an increase in geriatric populations. However, pattern variability between storms shows further study is needed to clarify exactly which resources should be utilized in order to maintain an ideal response to a natural disaster.