cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14325423.v1
title: Fishery of the Uçá Crab Ucides Cordatus (Linnaeus, 1763) in a Mangrove Area in Cananéia, State of São Paulo, Brazil: Fishery Performance, Exploitation Patterns and Factors Affecting the Catches

description: The fishery of the mangrove crab (Ucides cordatus) is one of the oldest sources of food, income and extractive activity in the estuarine systems of Brazil. The state of São Paulo has the largest population of any Brazilian state, and the city of Cananéia, in the Brazilian southeast has the highest recorded level of exploitation of the uçá-crab. Since 1990, this species has been under intense exploitation pressure due to the unauthorized use of a type of trap called 'redinha'. This type of fishing gear is considered harmful and is prohibited by Brazilian law, although its use is very common throughout the country. This study aims to evaluate the exploitation patterns of U. cordatus based on landing data and monitoring of the crab fishermen to verify the population structure of the crab stock and to identify the factors that influence the catches. A general view of the sustainability of the fishery for this resource is also provided for five defined mangrove sectors (areas A to E) at Cananéia. For this purpose, fishery data were recorded during 2009-2010 by the Instituto de Pesca (APTA/SAA-SP), and monitoring of the capture procedures used by two fishermen was conducted to obtain biometry data (CW, carapace width) and gender data for the captured crabs. The redinha trap was very efficient (86.4%) and produced sustainable catches because the trapped crabs were legal-sized males (CW&gt;60 mm), although some traps are lost or remain in the mangrove swamps and can cause pollution by introducing plastic debris. The fishery data were evaluated with a General Linear Model (GLM) based on six factors: the characteristics of the crab fishermen, the time of capture (by month and year), the lunar phase, the productive sector and the reproductive period. The individual crab fishermen's empirical knowledge, the year of capture and the productive sector were the strongest influences on the crab catch per unit effort (CPUE). Differing extraction patterns were found in the five sectors examined in the Cananéia estuary. These findings underscore the need for a reassessment of the prohibition of the trap's use, raising discussion as to its possible construction with biodegradable materials, thus ensuring profitable and sustainable catches through a local participatory management process.
DOI: 10.6084/m9.figshare.14325424.v1
title: Diel Variation in Abundance and Size of the South American Red Shrimp Pleoticus Muelleri (Spence Bate, 1888) (Decapoda, Solenoceridae) in the Ubatuba Region, Southeastern Brazil

description: Diel variation in the abundance and size of Pleoticus muelleri in the Ubatuba region was investigated during 2000. During each season of the year, sampling was conducted during the day and at night at 8 depths, from 5 to 40 m. The estimated number of shrimp was 955 individuals, 272 collected during the day and 683 at night. There was a difference in the abundance of P. muelleri between day and night (χ², p=2.33E-40). The abundance during the day and at night differed by season with the exception of the spring (χ², p=0.06). The abundance during both periods also differed by depth, except at 15 and 30 m, where it was not significant (χ², p=0.84 and 0.06, respectively). The shrimp caught at night were generally smaller than those caught during the day (Kolmogorov-Smirnov, p&lt;0.01). Pleoticus muelleri juveniles were found primarily at night. This tendency could have influenced the lower mean size for this period. The sediment type and the bottom temperature appear to influence the behavior of this species and consequently the catch rate during the periods analyzed.
DOI: 10.6084/m9.figshare.14325424
title: Diel Variation in Abundance and Size of the South American Red Shrimp Pleoticus Muelleri (Spence Bate, 1888) (Decapoda, Solenoceridae) in the Ubatuba Region, Southeastern Brazil

description: Diel variation in the abundance and size of Pleoticus muelleri in the Ubatuba region was investigated during 2000. During each season of the year, sampling was conducted during the day and at night at 8 depths, from 5 to 40 m. The estimated number of shrimp was 955 individuals, 272 collected during the day and 683 at night. There was a difference in the abundance of P. muelleri between day and night (χ², p=2.33E-40). The abundance during the day and at night differed by season with the exception of the spring (χ², p=0.06). The abundance during both periods also differed by depth, except at 15 and 30 m, where it was not significant (χ², p=0.84 and 0.06, respectively). The shrimp caught at night were generally smaller than those caught during the day (Kolmogorov-Smirnov, p&lt;0.01). Pleoticus muelleri juveniles were found primarily at night. This tendency could have influenced the lower mean size for this period. The sediment type and the bottom temperature appear to influence the behavior of this species and consequently the catch rate during the periods analyzed.
DOI: 10.6084/m9.figshare.14325426
title: Nycthemeral and Monthly Occupation of the Fish Assemblage on a Sheltered Beach of Baía Norte, Florianópolis, Santa Catarina State, Brazil

description: Interpreting fish community records is challenging for several reasons, including the lack of past ichthyofauna data, the cyclical temporal variations in the community, and the methodology employed, which usually underestimates fish assemblages. The objective of this study was to describe short-scale and meso-scale (nycthemeral period and months, respectively) temporal variations in the ichthyofauna composition and structure of a sheltered beach of Baía Norte (Florianópolis, Santa Catarina state, Brazil), using a capéchade net. Samples were collected monthly for a period of 48 hours. During the period from December 2010 to November 2011, a total of 19,302 individuals belonging to 89 species and 39 families were captured. The number of individuals that were sampled during the day and/or night was dependent on the sampling month. On average, the daytime assemblage was more abundant and different in structure and composition than the nighttime assemblage. Of the eight species that had the highest Index of Relative Importance (%IRI), five had higher variations (ANOVA F) between the day and night than between the months. This finding reinforced the need for sampling during both the day and night. The capéchade net effectively captured demersal and pelagic individuals in a broad range of sizes.
DOI: 10.6084/m9.figshare.14325426.v1
title: Nycthemeral and Monthly Occupation of the Fish Assemblage on a Sheltered Beach of Baía Norte, Florianópolis, Santa Catarina State, Brazil

description: Interpreting fish community records is challenging for several reasons, including the lack of past ichthyofauna data, the cyclical temporal variations in the community, and the methodology employed, which usually underestimates fish assemblages. The objective of this study was to describe short-scale and meso-scale (nycthemeral period and months, respectively) temporal variations in the ichthyofauna composition and structure of a sheltered beach of Baía Norte (Florianópolis, Santa Catarina state, Brazil), using a capéchade net. Samples were collected monthly for a period of 48 hours. During the period from December 2010 to November 2011, a total of 19,302 individuals belonging to 89 species and 39 families were captured. The number of individuals that were sampled during the day and/or night was dependent on the sampling month. On average, the daytime assemblage was more abundant and different in structure and composition than the nighttime assemblage. Of the eight species that had the highest Index of Relative Importance (%IRI), five had higher variations (ANOVA F) between the day and night than between the months. This finding reinforced the need for sampling during both the day and night. The capéchade net effectively captured demersal and pelagic individuals in a broad range of sizes.
DOI: 10.25934/00004474.0
title: Available IPD datapackage for study 'Open-Label Extension for Alzheimer's Disease Patients Who Complete One of Two Semagacestat Phase 3 Double-Blind Studies (H6L-MC-LFAN or H6L-MC-LFBC)'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00004474.1
title: IPD datapackage for study 'Open-Label Extension for Alzheimer's Disease Patients Who Complete One of Two Semagacestat Phase 3 Double-Blind Studies (H6L-MC-LFAN or H6L-MC-LFBC)' and research request: 'Identification of biomarkers associated with Alzheimer’s disease progression that correlate with responses to medications.'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.14325430
title: THE INFLUENCE OF TIDAL AND RAINFALL CYCLES ON INTERTIDAL NEMATODES: A CASE STUDY IN A TROPICAL SANDY BEACH

description: The present study describes the nematode assemblage of the bay of Tamandaré (Brazil), a tropical sandy beach, during the low, flood, high and ebb tides of two consecutive tidal cycles in four different months of the year (May, July, September and November). The nematode assemblage was dominated by Metachromadora and Perepsilonema and varied significantly between months and tides. Densities were lower in July, and changes in assemblage structure occurred during the transitional periods between rainy and dry months, which showed the influence of rainfall. Flood and ebb tides appeared to exercise the greatest influences over the tidal cycle, although the patterns were not very clear. Identification at genera/species level is recommended for future studies, to better understand the patterns of nematode assemblages during tidal cycles.
DOI: 10.6084/m9.figshare.14325430.v1
title: THE INFLUENCE OF TIDAL AND RAINFALL CYCLES ON INTERTIDAL NEMATODES: A CASE STUDY IN A TROPICAL SANDY BEACH

description: The present study describes the nematode assemblage of the bay of Tamandaré (Brazil), a tropical sandy beach, during the low, flood, high and ebb tides of two consecutive tidal cycles in four different months of the year (May, July, September and November). The nematode assemblage was dominated by Metachromadora and Perepsilonema and varied significantly between months and tides. Densities were lower in July, and changes in assemblage structure occurred during the transitional periods between rainy and dry months, which showed the influence of rainfall. Flood and ebb tides appeared to exercise the greatest influences over the tidal cycle, although the patterns were not very clear. Identification at genera/species level is recommended for future studies, to better understand the patterns of nematode assemblages during tidal cycles.
DOI: 10.6084/m9.figshare.14325432
title: A LPUE (LANDING PER UNIT EFFORT) ANALYSIS OF THE TRAWL FISHERY FOR THE COASTAL SHRIMPS Artemesia longinaris AND Pleoticus muelleri OFF SOUTHERN BRAZIL

description: The Argentine stiletto shrimp (Artemesia longinaris) and the Argentine red shrimp (Pleoticus muelleri) currently sustain an important fishery in terms of tonnage and revenues in southern Brazil. This study analyzed the factors affecting the abundance of both species through the application of Generalized Linear Models to landing-per-unit-of-effort (LPUE) data of the trawl fleet operating on the main fishing grounds between 1998 and 2005. The main patterns of LPUE variability of both species were attributed do the effect of seasons and annual cycles. Larger yields were obtained in the southern shallow areas of Rio Grande do Sul State. No tendency either to an increase or a decline in stock abundance was observed, but the effort in one year was affected by the success of the captures of the previous year. In the last two years analyzed the abundance and the total captures declined.
DOI: 10.6084/m9.figshare.14325432.v1
title: A LPUE (LANDING PER UNIT EFFORT) ANALYSIS OF THE TRAWL FISHERY FOR THE COASTAL SHRIMPS Artemesia longinaris AND Pleoticus muelleri OFF SOUTHERN BRAZIL

description: The Argentine stiletto shrimp (Artemesia longinaris) and the Argentine red shrimp (Pleoticus muelleri) currently sustain an important fishery in terms of tonnage and revenues in southern Brazil. This study analyzed the factors affecting the abundance of both species through the application of Generalized Linear Models to landing-per-unit-of-effort (LPUE) data of the trawl fleet operating on the main fishing grounds between 1998 and 2005. The main patterns of LPUE variability of both species were attributed do the effect of seasons and annual cycles. Larger yields were obtained in the southern shallow areas of Rio Grande do Sul State. No tendency either to an increase or a decline in stock abundance was observed, but the effort in one year was affected by the success of the captures of the previous year. In the last two years analyzed the abundance and the total captures declined.
DOI: 10.6084/m9.figshare.14325435.v1
title: SURVIVAL ESTIMATES OF BYCATCH INDIVIDUALS DISCARDED FROM BIVALVE DREDGES

description: The fate of released bycatch is an issue of great interest for fisheries research and management. Survival experiments were carried out to assess the survival capacity of animals damaged and discarded during clam dredging operations. Three common bycatch species, two fish (Trachinus vipera; Dicologlossa cuneata) and one crab (Polybius henslowii), were collected during the sorting of catches from a commercial dredging boat. An arbitrary score scale was used to quantify the type and extent of damage to the organisms. Onboard, damaged individuals were placed in tanks containing seawater which were subsequently transferred to the laboratory. Survival experiments were conducted during the subsequent 48h. D. cuneata exhibited the lowest mortality after 48h (54%), followed by P. henslowii (65%) and T. vipera (81%). Despite the magnitude of the percentage mortalities determined, the average number of individuals estimated to die during a 15 minutes tow (standard commercial fishing time) was relatively small: 1.2, 3.24 and 11 for D. cuneata, T. vipera and P. henslowii, respectively. Nevertheless, when these figures are extrapolated to cover all the dredging fleet the impact of this practice on the populations of the species studied can be significant, particulary for D. cuneata.
DOI: 10.6084/m9.figshare.14325435
title: SURVIVAL ESTIMATES OF BYCATCH INDIVIDUALS DISCARDED FROM BIVALVE DREDGES

description: The fate of released bycatch is an issue of great interest for fisheries research and management. Survival experiments were carried out to assess the survival capacity of animals damaged and discarded during clam dredging operations. Three common bycatch species, two fish (Trachinus vipera; Dicologlossa cuneata) and one crab (Polybius henslowii), were collected during the sorting of catches from a commercial dredging boat. An arbitrary score scale was used to quantify the type and extent of damage to the organisms. Onboard, damaged individuals were placed in tanks containing seawater which were subsequently transferred to the laboratory. Survival experiments were conducted during the subsequent 48h. D. cuneata exhibited the lowest mortality after 48h (54%), followed by P. henslowii (65%) and T. vipera (81%). Despite the magnitude of the percentage mortalities determined, the average number of individuals estimated to die during a 15 minutes tow (standard commercial fishing time) was relatively small: 1.2, 3.24 and 11 for D. cuneata, T. vipera and P. henslowii, respectively. Nevertheless, when these figures are extrapolated to cover all the dredging fleet the impact of this practice on the populations of the species studied can be significant, particulary for D. cuneata.
DOI: 10.6084/m9.figshare.14325438
title: SEASONAL ASSESSMENT OF HYDROGRAPHIC VARIABLES AND PHYTOPLANKTON COMMUNITY IN THE ARABIAN SEA WATERS OF KERALA, SOUTHWEST COAST OF INDIA

description: The seasonal variation of the hydrographic variables and phytoplankton species in the Arabian Sea waters of the Kerala coast, Southern India was investigated during different seasons. The variables such as pH, temperature, salinity, turbidity and chlorophyll-a contents of water were found to be high during pre-monsoon season and the dissolved oxygen content was minimal. The concentration of nutrients viz., nitrate, phosphate, silicate varied independently. In the study a total of 53 species of phytoplankton were recorded. Their density was higher during the post-monsoon season than during other seasons and the diatoms were found to be the dominant species. The major phytoplankton in terms of frequency and abundance were the species namely, Biddulphia mobiliensis, Chaetoceros curvisetus, Licmophora abbreviata, Skeletonema costatum, Prorocentrum micans and Oscillatoria sp. They showed significant positive correlation with pH, temperature, salinity, nitrate, phosphate and chlorophyll-a contents, whereas turbidity, dissolved oxygen and silicate exhibited significant negative correlation. The Principal Component Analysis (PCA) developed two principal components with 84.74% of total variability in the water quality which separated pre- and post-monsoon periods from the monsoon season on axis I, and pre-monsoon and monsoon periods from post-monsoon on axis II.
DOI: 10.6084/m9.figshare.14325438.v1
title: SEASONAL ASSESSMENT OF HYDROGRAPHIC VARIABLES AND PHYTOPLANKTON COMMUNITY IN THE ARABIAN SEA WATERS OF KERALA, SOUTHWEST COAST OF INDIA

description: The seasonal variation of the hydrographic variables and phytoplankton species in the Arabian Sea waters of the Kerala coast, Southern India was investigated during different seasons. The variables such as pH, temperature, salinity, turbidity and chlorophyll-a contents of water were found to be high during pre-monsoon season and the dissolved oxygen content was minimal. The concentration of nutrients viz., nitrate, phosphate, silicate varied independently. In the study a total of 53 species of phytoplankton were recorded. Their density was higher during the post-monsoon season than during other seasons and the diatoms were found to be the dominant species. The major phytoplankton in terms of frequency and abundance were the species namely, Biddulphia mobiliensis, Chaetoceros curvisetus, Licmophora abbreviata, Skeletonema costatum, Prorocentrum micans and Oscillatoria sp. They showed significant positive correlation with pH, temperature, salinity, nitrate, phosphate and chlorophyll-a contents, whereas turbidity, dissolved oxygen and silicate exhibited significant negative correlation. The Principal Component Analysis (PCA) developed two principal components with 84.74% of total variability in the water quality which separated pre- and post-monsoon periods from the monsoon season on axis I, and pre-monsoon and monsoon periods from post-monsoon on axis II.
DOI: 10.6084/m9.figshare.14325442
title: HYDRODYNAMICS AND BIO-OPTICAL ASSESSMENT OF TWO PRISTINE SUBTROPICAL ESTUARIES IN SOUTHERN BRAZIL

description: Measuring small-scale physical processes and how they affect the spatial patterns of sea water's optical constituents plays a key role in understanding the functioning of complex coastal ecosystems such as estuaries. The spatial variations of physical and bio-optical water properties were investigated during one spring tidal cycle in austral summer, on two transects across the channel of the Medeiros and Itaqui sub-estuaries. These sub-estuaries are a biosphere reserve, and part of the Paranaguá Estuarine System, located on the Southern Brazilian coast. Both sub-estuaries were classified as Type 1a, wellmixed with low stratification. The salinity variations are in phase with the water level, and the tidal propagation is well represented by a standing wave. The vertical velocity profiles showed little vertical shear, and the intensity of the u-component of the velocity varied semi-diurnally. The upper estuary salt transport was dominated by tidal diffusion in an unstable water column. The optical environment presented a mixed dominance of optically active substances, as indicated by the absorption coefficients of dissolved and particulate matter. The colored dissolved organic matter (CDOM) showed overall conservative behavior and was dominant in light absorption below 550 nm in the Medeiros, while nonalgal particles play the most important role in light absorption in the Itaqui in the blue absorption band. The phytoplanktonic contribution is prominent in the red domain and increases as a function of saline intrusion. However, due to the influence of freshwater discharge and the re-suspension of bottom sediments induced by physical processes, the concentrations of the optical components in the water column do not generally have any simple relationships between them.
DOI: 10.6084/m9.figshare.14325442.v1
title: HYDRODYNAMICS AND BIO-OPTICAL ASSESSMENT OF TWO PRISTINE SUBTROPICAL ESTUARIES IN SOUTHERN BRAZIL

description: Measuring small-scale physical processes and how they affect the spatial patterns of sea water's optical constituents plays a key role in understanding the functioning of complex coastal ecosystems such as estuaries. The spatial variations of physical and bio-optical water properties were investigated during one spring tidal cycle in austral summer, on two transects across the channel of the Medeiros and Itaqui sub-estuaries. These sub-estuaries are a biosphere reserve, and part of the Paranaguá Estuarine System, located on the Southern Brazilian coast. Both sub-estuaries were classified as Type 1a, wellmixed with low stratification. The salinity variations are in phase with the water level, and the tidal propagation is well represented by a standing wave. The vertical velocity profiles showed little vertical shear, and the intensity of the u-component of the velocity varied semi-diurnally. The upper estuary salt transport was dominated by tidal diffusion in an unstable water column. The optical environment presented a mixed dominance of optically active substances, as indicated by the absorption coefficients of dissolved and particulate matter. The colored dissolved organic matter (CDOM) showed overall conservative behavior and was dominant in light absorption below 550 nm in the Medeiros, while nonalgal particles play the most important role in light absorption in the Itaqui in the blue absorption band. The phytoplanktonic contribution is prominent in the red domain and increases as a function of saline intrusion. However, due to the influence of freshwater discharge and the re-suspension of bottom sediments induced by physical processes, the concentrations of the optical components in the water column do not generally have any simple relationships between them.