cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25505/fiz.icsd.cc2056zd
title: CSD 1852063: Experimental Crystal Structure Determination

description: Related Article: Vladislav V. Klepov, Christian A. Juillerat, Evgeny V. Alekseev, Hans-Conrad zur Loye|2019|Inorg.Chem.|58|724|doi:10.1021/acs.inorgchem.8b02906
DOI: 10.25505/fiz.icsd.cc2056yc
title: CSD 1852062: Experimental Crystal Structure Determination

description: Related Article: Vladislav V. Klepov, Christian A. Juillerat, Evgeny V. Alekseev, Hans-Conrad zur Loye|2019|Inorg.Chem.|58|724|doi:10.1021/acs.inorgchem.8b02906
DOI: 10.25505/fiz.icsd.cc2056xb
title: CSD 1852061: Experimental Crystal Structure Determination

description: Related Article: Vladislav V. Klepov, Christian A. Juillerat, Evgeny V. Alekseev, Hans-Conrad zur Loye|2019|Inorg.Chem.|58|724|doi:10.1021/acs.inorgchem.8b02906
DOI: 10.25505/fiz.icsd.cc2056v8
title: CSD 1852059: Experimental Crystal Structure Determination

description: Related Article: Vladislav V. Klepov, Christian A. Juillerat, Evgeny V. Alekseev, Hans-Conrad zur Loye|2019|Inorg.Chem.|58|724|doi:10.1021/acs.inorgchem.8b02906
DOI: 10.25505/fiz.icsd.cc2056t7
title: CSD 1852058: Experimental Crystal Structure Determination

description: Related Article: Vladislav V. Klepov, Christian A. Juillerat, Evgeny V. Alekseev, Hans-Conrad zur Loye|2019|Inorg.Chem.|58|724|doi:10.1021/acs.inorgchem.8b02906
DOI: 10.25505/fiz.icsd.cc2056w9
title: CSD 1852060: Experimental Crystal Structure Determination

description: Related Article: Vladislav V. Klepov, Christian A. Juillerat, Evgeny V. Alekseev, Hans-Conrad zur Loye|2019|Inorg.Chem.|58|724|doi:10.1021/acs.inorgchem.8b02906
DOI: 10.25505/fiz.icsd.cc20krs4
title: CSD 1864116: Experimental Crystal Structure Determination

description: Related Article: Su-Yun Zhang, Wen-Bin Guo, Zhang-Zhen He|2019|Dalton Trans.|48|65|doi:10.1039/C8DT03860K
DOI: 10.5281/zenodo.4058696
title: The amplification dynamics of MITEs and their impact on rice trait variability

description: MITEs are present in plant genomes in high copy numbers and are tightly associated to genes. The analysis of MITE dynamics presented here highlights their importance in rice domestication and breeding. We show that MITEs uncover more associations with agronomic traits than SNPs when used in GWAS, which highlights both their importance as drivers of genetic variability and their usefulness for association studies. Finally, our results provide new insights on the still obscure amplification mechanism of MITEs.
description: See README.txt for detailed information about the files
description: {"references": ["https://doi.org/10.1101/2020.10.01.322784"]}
DOI: 10.5281/zenodo.4058695
title: The amplification dynamics of MITEs and their impact on rice trait variability

description: MITEs are present in plant genomes in high copy numbers and are tightly associated to genes. The analysis of MITE dynamics presented here highlights their importance in rice domestication and breeding. We show that MITEs uncover more associations with agronomic traits than SNPs when used in GWAS, which highlights both their importance as drivers of genetic variability and their usefulness for association studies. Finally, our results provide new insights on the still obscure amplification mechanism of MITEs.
description: See README.txt for detailed information about the files
description: {"references": ["https://doi.org/10.1101/2020.10.01.322784"]}
DOI: 10.5281/zenodo.4555070
title: Modeling Data for "Conservation Opportunities and Challenges in Brazil's Roadless and Railroad-Less Areas"

description: Spatial Data and Spatial Models for <strong><em>Conservation Opportunities and Challenges in Brazil’s Roadless and Railroad-Less</em> Areas</strong> Spatial Data is in shapefile (.shp) and raster (.tif) format. Spatial Models are included in Python 2.7 script using arcpy as well as ArcGIS v.10.4 models and can be imported as ArcToolboxes. ***Read all instructions for remodeling included in the .txt files.***
description: Research Funded by: Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)
DOI: 10.5281/zenodo.4555069
title: Modeling Data for "Conservation Opportunities and Challenges in Brazil's Roadless and Railroad-Less Areas"

description: Spatial Data and Spatial Models for <strong><em>Conservation Opportunities and Challenges in Brazil’s Roadless and Railroad-Less</em> Areas</strong> Spatial Data is in shapefile (.shp) and raster (.tif) format. Spatial Models are included in Python 2.7 script using arcpy as well as ArcGIS v.10.4 models and can be imported as ArcToolboxes. ***Read all instructions for remodeling included in the .txt files.***
description: Research Funded by: Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)
DOI: 10.15468/dnd3se
title: The Isometopinae (Hemiptera: Heteroptera: Miridae) of India and Sri Lanka: A Review of the Subfamily, with Descriptions of Six New Species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yeshwanth, H. M., Chérot, F., Henry, T. J. (2021): The Isometopinae (Hemiptera: Heteroptera: Miridae) of India and Sri Lanka: A Review of the Subfamily, with Descriptions of Six New Species. Zootaxa 4903 (2): 151-193, DOI: https://doi.org/10.11646/zootaxa.4903.2.1
DOI: 10.6084/m9.figshare.14134916
title: Supplementary Material for: Comprehensive Analysis of microRNA Profiles in Organoids Derived from Human Colorectal Adenoma and Cancer

description: <b><i>Introduction:</i></b> Exosomes are membrane-enclosed nanovesicles, which are increasingly being recognized as important cell communication components for their role in transmitting microRNAs (miRNAs). No previous study has addressed the exosomal miRNA profile in colorectal adenomas (CRAs) because the long-term culture of CRA is challenging. This study aimed to identify the miRNA signature in organoid exosomes derived from human CRA and colorectal cancer (CRC) samples. <b><i>Methods:</i></b> Organoid cultures were developed from resected colorectal tissues of patients with CRA or CRC undergoing surgery or endoscopic mucosal resection. Exosomes were prepared from the conditioned medium of the organoids. miRNAs were prepared from the exosomes and their source organoids. The miRNA expression profiles were compared using microarray analysis. The impact of alteration of miRNA expression on cell proliferation was examined using miRNA mimics or inhibitors in HT-29 human CRC cells. <b><i>Results:</i></b> We established 6 organoid lines from CRC and 8 organoid lines from CRA. Exosomal miRNA signatures were different between the organoids derived from CRA and CRC. Both exosomal and cellular miR-1246 expressions were upregulated in CRC-derived organoids compared to their expression in CRA-derived organoids. Alteration of miR-1246 expression by the miR-1246 mimic or inhibitor increased or decreased cell proliferation in HT-29 cells, respectively. <b><i>Conclusions:</i></b> We report for the first time the miRNA profiles of exosomes in CRA- and CRC-derived organoids. The upregulation of miR-1246 might play a role in increased cell proliferation in the process of CRA-carcinoma transition.
DOI: 10.6084/m9.figshare.14134916.v1
title: Supplementary Material for: Comprehensive Analysis of microRNA Profiles in Organoids Derived from Human Colorectal Adenoma and Cancer

description: <b><i>Introduction:</i></b> Exosomes are membrane-enclosed nanovesicles, which are increasingly being recognized as important cell communication components for their role in transmitting microRNAs (miRNAs). No previous study has addressed the exosomal miRNA profile in colorectal adenomas (CRAs) because the long-term culture of CRA is challenging. This study aimed to identify the miRNA signature in organoid exosomes derived from human CRA and colorectal cancer (CRC) samples. <b><i>Methods:</i></b> Organoid cultures were developed from resected colorectal tissues of patients with CRA or CRC undergoing surgery or endoscopic mucosal resection. Exosomes were prepared from the conditioned medium of the organoids. miRNAs were prepared from the exosomes and their source organoids. The miRNA expression profiles were compared using microarray analysis. The impact of alteration of miRNA expression on cell proliferation was examined using miRNA mimics or inhibitors in HT-29 human CRC cells. <b><i>Results:</i></b> We established 6 organoid lines from CRC and 8 organoid lines from CRA. Exosomal miRNA signatures were different between the organoids derived from CRA and CRC. Both exosomal and cellular miR-1246 expressions were upregulated in CRC-derived organoids compared to their expression in CRA-derived organoids. Alteration of miR-1246 expression by the miR-1246 mimic or inhibitor increased or decreased cell proliferation in HT-29 cells, respectively. <b><i>Conclusions:</i></b> We report for the first time the miRNA profiles of exosomes in CRA- and CRC-derived organoids. The upregulation of miR-1246 might play a role in increased cell proliferation in the process of CRA-carcinoma transition.
DOI: 10.6084/m9.figshare.14134988
title: L_NL_Features

description: The big feature extracted with linear+nonlinear computational visual model
DOI: 10.6084/m9.figshare.14134988.v1
title: L_NL_Features

description: The big feature extracted with linear+nonlinear computational visual model
DOI: 10.6084/m9.figshare.13109582
title: drought on productivity_WCT

description: The dataset regarding drought on ANPP.
DOI: 10.17034/c0e7a072-9d8e-4e7e-ac52-7dc205a1512e
title: Dataset for "A Multi-Omics Approach Identifies Key Regulatory Pathways Induced by Long-Term Zinc Supplementation in Human Primary Retinal Pigment Epithelium"

description: All omics data is deposited into GEO database with dataset identifier GSE156452 Data is scheduled to be released on 19 Aug, 2021
DOI: 10.6084/m9.figshare.14113229
title: Community-networks that facilitate engagement in health research: Ifakara Health Research Institute-Bagamoyo case study

description: <br>MetadataJournal name: AAS Open ResearchTitle: Community-networks that facilitate engagement in health research: Ifakara Health Research Institute-Bagamoyo case studyREADME: Focus group discussion and interview topic guides. Underlying data cannot be provided are this is classified for ethical reasons, will need to sign data sharing agreement and get a waiver from Institution review board(IRB).Supplementary files uploaded are Focus group discussion and interview topic guides.
DOI: 10.6084/m9.figshare.14113229.v1
title: Community-networks that facilitate engagement in health research: Ifakara Health Research Institute-Bagamoyo case study

description: <br>MetadataJournal name: AAS Open ResearchTitle: Community-networks that facilitate engagement in health research: Ifakara Health Research Institute-Bagamoyo case studyREADME: Focus group discussion and interview topic guides. Underlying data cannot be provided are this is classified for ethical reasons, will need to sign data sharing agreement and get a waiver from Institution review board(IRB).Supplementary files uploaded are Focus group discussion and interview topic guides.
DOI: 10.25646/8085
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.5281/zenodo.4569861
title: Supplementary Information for "pH-Independent Heat Capacity Changes during Phosphorolysis Catalyzed by the Pyrimidine Nucleoside Phosphorylase from Geobacillus thermoglucosidasius"

description: This is the external Supplementary Information for our publication "pH-Independent Heat Capacity Changes during Phosphorolysis Catalyzed by the Pyrimidine Nucleoside Phosphorylase from <em>Geobacillus thermoglucosidasius</em>". The .pdf file contains the Supplementary Information: author contributions, experimental procedures and supplementary items. The .zip file contains the raw data and metadata for all items (supplementary and main text) and the calculations. Metadata files were curated by Felix Kaspar and calculation files were created by Darian Wolff. The Python code used for spectral unmixing is available on this platform (10.5281/zenodo.3243376) and has been described in our previous publications (10.3390/mps2030060, 10.5281/zenodo.3333469, 10.1002/cbic.202000204, 10.5281/zenodo.3723806). Further applications of this method can be found in our recent articles in <em>Adv. Synth. Catal.</em> (10.1002/adsc.201901230) and its supporting material (10.5281/zenodo.3568858) and in <em>ChemBioChem</em> (10.1002/cbic.202000679) and its supporting material on this platform (10.5281/zenodo.4284188).
DOI: 10.5281/zenodo.4534199
title: Supplementary Information for "pH-Independent Heat Capacity Changes during Phosphorolysis Catalyzed by the Pyrimidine Nucleoside Phosphorylase from Geobacillus thermoglucosidasius"

description: This is the external Supplementary Information for our publication "pH-Independent Heat Capacity Changes during Phosphorolysis Catalyzed by the Pyrimidine Nucleoside Phosphorylase from <em>Geobacillus thermoglucosidasius</em>". The .pdf file contains the Supplementary Information: author contributions, experimental procedures and supplementary items. The .zip file contains the raw data and metadata for all items (supplementary and main text) and the calculations. Metadata files were curated by Felix Kaspar and calculation files were created by Darian Wolff. The Python code used for spectral unmixing is available on this platform (10.5281/zenodo.3243376) and has been described in our previous publications (10.3390/mps2030060, 10.5281/zenodo.3333469, 10.1002/cbic.202000204, 10.5281/zenodo.3723806). Further applications of this method can be found in our recent articles in <em>Adv. Synth. Catal.</em> (10.1002/adsc.201901230) and its supporting material (10.5281/zenodo.3568858) and in <em>ChemBioChem</em> (10.1002/cbic.202000679) and its supporting material on this platform (10.5281/zenodo.4284188).
DOI: 10.25423/cmcc/medsea_analysis_forecast_phy_006_013
title: Mediterranean Sea Physical Analysis and Forecast (CMEMS MED-Currents 2015-2017)
title: MEDSEA_ANALYSIS_FORECAST_PHY_006_013

description: The CMEMS Mediterranean Sea Physical Analysis and Forecast system comprises an Ocean General Circulation Model based on NEMO v3.6 and a variational data assimilation scheme (OceanVar) for temperature and salinity vertical profiles and satellite SLA along track data. The model has a 1/24˚uniform horizontal grid resolution and 141 unevenly spaced vertical levels. It spans the time period 2015-2017 and it is daily updated.
DOI: 10.21227/ahxm-k331
title: SEARCH AND RESCUE IMAGE DATASET FOR PERSON DETECTION - SARD

description: For the task of detecting casualties and persons in search and rescue scenarios in drone images and videos, our database called SARD was built. The actors in the footage have simulate exhausted and injured persons as well as "classic" types of movement of people in nature, such as running, walking, standing, sitting, or lying down. Since different types of terrain and backgrounds determine possible events and scenarios in captured images and videos, the shots include persons on macadam roads, in quarries, low and high grass, forest shade, and the like. The obtained dataset comprises 1,981 manually labeled images extracted from video frames.To increase the robustness of the SARD data, an extension of the SARD set, called Corr, was created that includes images that further simulate different weather conditions that may occur in actual search and rescue situations such as fog, snow, and ice. Also, blur images are included in the Corr set that occur in real conditions as a result of camera movement and aerial shooting in motion.
DOI: 10.18112/openneuro.ds003552.v1.0.0
title: Prediction Error
DOI: 10.6084/m9.figshare.14135015.v1
title: New anticancer Pd and Pt complexes of tertamyl dithiocarbamate and DACH ligands against HT29 and Panc1 cell lines

description: To investigate the reduction of side effects of commercial antitumor drugs such as cisplatin, two new platinum and palladium complexes with a formula of [M(DACH)(tertamyl.dtc)]NO<sub>3</sub> were synthesized (DACH is 1<i>R</i>, 2R<i>-</i>diaminocyclohexane, tertamyl-dtc is tertpentyl dithiocarbamate, and M is palladium or platin ionic metals) and characterized by spectroscopic methods. The <i>in vitro</i> cytotoxicity of these compounds against HT29 and Panc1 cell lines showed that the IC<sub>50</sub> values against Panc1 cell line of [Pt(DACH)(tertamyl.dtc)]NO<sub>3</sub> and [Pd(DACH)(tertamyl.dtc)]NO<sub>3</sub> were 263.1 and 198.7 µM, and also against HT29 cell line were 241.9 and 258.2 µM, respectively. They were similar to the value obtained for oxaliplatin and lower than cisplatin value. Thermal stability and circular dichroism results demonstrated that both metal complexes could bind to DNA via electrostatic bonds. Due to electrostatic interaction, the configuration of B-DNA to C-DNA changed, though the possibility of groove interaction may be strengthened. Furthermore, molecular docking simulation showed higher negative docking energy for [Pd(DACH)(tertamyl.dtc)]NO<sub>3</sub> complex with a higher tendency for DNA interaction. <i>In vitro</i> cytotoxicity of two new Pt and Pd compounds have been studied against two cell lines (HT29 and Panc 1), which are almost equal to the value obtained for oxaliplatin and they are lower than cisplatin value. Thermal stability studies and CD results demonstrated that both complexes bind to DNA via electrostatic bonds. Further, molecular docking showed higher negative docking energy for [Pd(DACH)(tertamyl.dtc)]NO3 complex with a higher tendency for interaction. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.14135015
title: New anticancer Pd and Pt complexes of tertamyl dithiocarbamate and DACH ligands against HT29 and Panc1 cell lines

description: To investigate the reduction of side effects of commercial antitumor drugs such as cisplatin, two new platinum and palladium complexes with a formula of [M(DACH)(tertamyl.dtc)]NO<sub>3</sub> were synthesized (DACH is 1<i>R</i>, 2R<i>-</i>diaminocyclohexane, tertamyl-dtc is tertpentyl dithiocarbamate, and M is palladium or platin ionic metals) and characterized by spectroscopic methods. The <i>in vitro</i> cytotoxicity of these compounds against HT29 and Panc1 cell lines showed that the IC<sub>50</sub> values against Panc1 cell line of [Pt(DACH)(tertamyl.dtc)]NO<sub>3</sub> and [Pd(DACH)(tertamyl.dtc)]NO<sub>3</sub> were 263.1 and 198.7 µM, and also against HT29 cell line were 241.9 and 258.2 µM, respectively. They were similar to the value obtained for oxaliplatin and lower than cisplatin value. Thermal stability and circular dichroism results demonstrated that both metal complexes could bind to DNA via electrostatic bonds. Due to electrostatic interaction, the configuration of B-DNA to C-DNA changed, though the possibility of groove interaction may be strengthened. Furthermore, molecular docking simulation showed higher negative docking energy for [Pd(DACH)(tertamyl.dtc)]NO<sub>3</sub> complex with a higher tendency for DNA interaction. <i>In vitro</i> cytotoxicity of two new Pt and Pd compounds have been studied against two cell lines (HT29 and Panc 1), which are almost equal to the value obtained for oxaliplatin and they are lower than cisplatin value. Thermal stability studies and CD results demonstrated that both complexes bind to DNA via electrostatic bonds. Further, molecular docking showed higher negative docking energy for [Pd(DACH)(tertamyl.dtc)]NO3 complex with a higher tendency for interaction. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.13292750
title: Lukas et al. 2021: Data from "Consistent behavioral syndrome across seasons in an invasive freshwater fish"

description: <b>Topic: </b>We explore whether dispersing individuals of a non-native species exhibit behavioral types that differ from those remaining in the source population by investigating a feral population of guppies (<i>Poecilia reticulata</i>) in Germany that undergoes a yearly range shift cycle. <b><br></b><b>DATA_Gillbach_Sampling_2016 </b>- record of (native and non-native) fish sampled at the Gillbach in 2016Fish were collected from a thermally-altered creek, the Gillbach, in Germany. Samplings were conducted during three occasions (March, June, August) in 2016 and at three sites (Gillbach source, 1km and 2km downstream). Guppies were found at site 1 during all three occasions. We did not encounter any guppies downstream of site 2 during any of the samplings.<br><b>DATA_Gillbach_Temp_2016</b> - temperature profile of the two collection sites, from which feral guppies were sampled. Water temperature fluctuations were logged with HOBO data loggers for one year (sampling rate 1 obs/4h) at the source of the Gillbach (site 1) and one kilometer downstream (site 2). Unfortunately, not all loggers could be retrieved at site 2, resulting in missing data.<b><br></b><b>DATA_Gillbach_behavior </b>- Laboratory behavioral experiments on guppies (<i>Poecilia reticulata</i>) from a feral population in Germany. In 2016, guppies were found at site 1 during all three occasions, but at site 2 we only found sufficient numbers (for behavioral testing) in August. A total of 166 fish were tested personality trait expression, assessing boldness (as latency to emerge from a shelter), sociability (as mean distance the fish kept to a biomimetic robot) and activity (mean velocity with which the fish explored the open arena). Each fish was tested a total of three times. The trait values were obtained from 2D video tracking (XY-position data can be supplied upon request). <br>