cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22087148
title: Supplementary Material for: Point of Care Ultrasound Training in Nephrology: Twitter Poll as a Modern Tool for Development of an Effective Curriculum

description: <b><i>Introduction:</i></b> Point of care ultrasonography (POCUS) is being increasingly recognized as an adjunct to physical examination in the field of nephrology. However, paucity of trained faculty and standardized curricula remain key barriers to widespread adoption of this skill as well as development of reliable quality assessment programs at the institutional level. Herein, we sought to explore the utility of Twitter polls to gain insights into knowledge deficits of the learners for making curricular improvements while simultaneously disseminating POCUS pearls and pitfalls. <b><i>Methods:</i></b> A series of 57 single-question polls were tweeted over a 12-month period, each containing an ultrasound image or a video asking for correct interpretation. These were sent out from the Twitter handle of NephroPOCUS.com (@NephroP), an online POCUS education tool. The answer and a brief explanation were shared in a subsequent tweet at the end of the voting period. Information on the percentage of correct answers, Tweet impressions, and engagements was collected and analyzed by the pre-determined difficulty level (I-III) and the organ/learning objective being tested. <b><i>Results:</i></b> The number of responses per poll was 228 ± 94.6 (mean ± SD), and the percentage of correct responses was 57.9 ± 17.5 (mean ± SD). 16 (of 57) polls received less than 50% correct responses, of which 8 belonged to level III difficulty. The learning objectives that received the least number of correct responses in the kidney, cardiac, lung, vascular, and other categories were identification of end-stage kidney (16.2% correct answers), right pleural effusion on the parasternal short axis view of the heart (29%), right pleural effusion from the subxiphoid window (39%), grading of systemic venous congestion (27.3%), and identification of ascites on the right lateral chest window (15%), respectively. The overall engagement rate was 6.96%, which was above the median for health and higher education-related tweets on Twitter. Targeted didactic material was developed based on these results, published on various open-access nephrology education platforms. <b><i>Conclusions:</i></b> Twitter polls aid in identifying the knowledge gaps among POCUS learners. Information obtained from the polls can be used to improve POCUS-related curricula and develop targeted educational material to facilitate remote learning.
DOI: 10.6084/m9.figshare.22140596
title: Supplementary Material for: The Effect of Preoperative Tamsulosin on Ureteral Navigation, Operation, and Safety: A Systematic Review and Meta-Analysis

description: <b><i>Introduction:</i></b> Urolithiasis is one of the most common diseases in the world, and at present, ureteroscopy (URS) is the first choice for its treatment. Although the effect is good, there is a risk of insertion failure of ureteroscope. Tamsulosin, as an α-receptor blocker, has the function of relaxing ureteral muscles, and can help stones to be discharged from ureteral orifice. In this study, we aimed to determine the effect of preoperative tamsulosin on ureteral navigation, operation, and safety. <b><i>Methods:</i></b> This study was conducted and reported according to the meta-analysis extension of the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA). The PubMed and Embase databases were searched for studies. Data were extracted according to the PRISMA principles. We collected and combined randomized controlled trial and researches in reviews of preoperative tamsulosin to explore the effect of preoperative tamsulosin on ureteral navigation, operation, and safety. A data synthesis was performed using RevMan 5.4.1 software (Cochrane). Heterogeneity was mainly evaluated with I2 tests. Key metrics include: success rate of ureteral navigation, time of URS, stone-free rate, and postoperative symptoms. <b><i>Result:</i></b> We summarized and analyzed 6 studies. We noted a statistically significant improvement in the success rate of ureteral navigation (Mantel-Haenszel [M-H], odds ratio [OR]: 3.78, 95% confidence interval [CI]: [2.34, 6.12], <i>p</i> &lt; 0.01) and stone-free rate (M-H, OR: 2.25, 95% CI: [1.16, 4.36], <i>p</i> = 0.02) with tamsulosin preoperatively. At the same time, we also observed that postoperative fever (M-H, OR: 0.37, 95% CI: [0.16, 0.89], <i>p</i> = 0.03) and postoperative analgesia (M-H, OR: 0.21, 95% CI: [0.05, 0.92], <i>p</i> = 0.04) were also reduced because of preoperative tamsulosin. <b><i>Conclusion:</i></b> Preoperative tamsulosin can not only increase the one-time success rate of ureteral navigation and the stone-free rate of URS but also reduce the incidence of postoperative adverse symptoms such as postoperative fever and postoperative pain.
DOI: 10.6084/m9.figshare.22548604
title: Supplementary Material for: Impact of Clinical Parameters and Induction Regimens on Peripheral Blood Stem-Cell Mobilization and Collection in Multiple Myeloma Patients

description: Introduction High-dose chemotherapy (HDCT) followed by autologous blood stem-cell transplantation (ABSCT) remains the standard consolidation therapy for newly diagnosed eligible multiple myeloma (MM) patients. As a prerequisite, peripheral blood stem cells (PBSCs) must be mobilized and collected by leukapheresis (LP). Many factors can hamper PBSC mobilization/collection. Here, we provide a comprehensive multiparametric assessment of PBSC mobilization/collection outcome parameters in a large cohort. Methods In total, 790 MM patients (471 [60%] male, 319 [40%] female) who underwent PBSC mobilization/collection during first-line treatment were included. Evaluated PBSC mobilization/collection outcome parameters included the prolongation of PBSC mobilization, plerixafor administration, number of LP sessions, and overall PBSC collection goal/result. Results 741 (94%) patients received cyclophosphamide/adriamycin/dexamethasone (CAD) and granulocyte-colony-stimulating factor (G-CSF) mobilization. Plerixafor was administered in 80 (10%) patients. 489 (62%) patients started LP without delay. 530 (67%) patients reached the PBSC collection goal at the first LP session. The mean overall PBSC collection result was 10.3 (standard deviation [SD] 4.4) x106 CD34+ cells/kg. In a multiparametric analysis, variables negatively associated with PBSC mobilization/collection outcomes were female gender, age &gt;60 years, an advanced ISS stage, and local radiation pre-/during induction, but not remission status post-induction. Notably, the identified risk factors contributed differently to each PBSC mobilization/collection outcome parameter. In this context, compared to all other induction regimens, lenalidomide-based induction with/without antibodies negatively affected only the number of LP sessions required to reach the collection goal, but no other PBSC mobilization/collection outcome parameters. In contrast, the probability of reaching a high collection goal of ≥6 x106 CD34+ cells/kg body weight was higher after lenalidomide-based induction compared to VCD/PAD or VAD – taking into account, that a higher G-SCF dosage was given in approximately one third of patients receiving lenalidomide-based induction with/without antibodies. Discussion/Conclusion Considering the identified risk factors in the clinical setting can contribute to optimized PBSC mobilization/collection. Moreover, our study demonstrates the necessity for a differentiated evaluation of PBSC mobilization/collection outcome parameters.
DOI: 10.6084/m9.figshare.23999886
title: Supplementary Material for: AKAP12 and IGFBP4 are prognostic factors for chronic lymphocytic leukemia

description: Introduction: To develop a prognostic model for chronic lymphocytic leukemia (CLL). Methods: GEO2R was used to retrieve the gene expression data of CLL and normal B cells from the Gene Expression Omnibus (GEO, GSE22529 and GSE50006 datasets) database. Perl (Practical Extraction and Report Language) was used to extract the gene expression and overall survival (OS) data of CLL patients from the CLLE-ES project in the ICGC (International Cancer Genome Consortium) database. Cox regression with Lasso was used to create and validate a prognostic model for CLL. Results: A total of 267 genes exhibited differential expression between CLL and normal B cells. Uni-Cox analysis identified 14 DEGs that correlated with overall survival (OS). Lasso multivariate evaluation demonstrated that AKAP12 and IGFBP4 are independent prognostic factors for CLL. Kaplan-Meier survival analysis revealed a significant association between the estimated risk score and survival. The area under the receiver operating characteristics (ROC) curve (AUC) was calculated to be 0.97, indicating high predictive accuracy. In addition, high AKAP12 and IGFBP4 risk score was associated with the high incidence of trisomy 12q. Conclusion: Taken together, AKAP12 and IGFBP4 are independent prognostic factors for CLL.
DOI: 10.6084/m9.figshare.24297058
title: Supplementary Material for: Outcomes and Feasibility of an Occupational Care Programme (TERRA) to Support Work Ability of Rare and Advanced Cancer Patients: A Report of 7 Cases

description: Introduction: Advancements in the field of oncology are allowing patients to live longer, with enhanced quality of life (QoL). Accordingly, more patients with cancer are expressing the desire to return to work (RTW). Previous research has indicated that patients with a rare or advanced cancer can experience unique problems in the RTW process. Methods: This pilot study evaluated the outcomes and feasibility of the occupational care programme TERRA (i.e., recalibraTe lifE and woRk with and afteR cAncer) for patients with a rare or advanced cancer. Four rare cancer patients and three advanced cancer patients completed TERRA; a supportive occupational care programme consisting of five online group sessions over a two-month period. Pre- and post-intervention outcomes were collected using validated self-report questionnaires. The primary outcome was work ability. Secondary outcomes included QoL, anxiety and depression, fatigue, unmet needs, self-efficacy, readiness for RTW, work intention, work involvement, and work-life conflict. Feasibility was assessed using the RE-AIM model. Results: Changes in work ability scores were inconsistent across participants. Well-being outcomes generally improved following the intervention. Feasibility was evaluated positively by both participants and trainers. Discussion/Conclusion: A multidisciplinary approach may further improve outcomes of occupational interventions supporting rare and advanced cancer patients. An effectiveness study to evaluate the outcomes and feasibility of the programme is deemed necessary.
DOI: 10.6084/m9.figshare.24573484
title: Supplementary Material for: Metastatic ductal eccrine adenocarcinoma with excellent response to immunotherapy

description: Eccrine carcinoma, a subtype of which is ductal eccrine adenocarcinoma (DEA), is a rare cutaneous malignancy. For metastatic eccrine carcinoma there is very limited data to guide treatment. Conventional chemotherapy is of limited benefit and there is a only a small body of evidence for the use of immunotherapy in non-DEA eccrine carcinomas. We report the first case of metastatic DEA treated with a multimodality approach including surgery, radiotherapy and immunotherapy, with an excellent prolonged response to pembrolizumab, and provide a review of the literature on pathological and management aspects for this rare tumour subtype. A 60-year old male with a history of pT1N0M0 left scalp DEA, managed two years prior with excision and adjuvant radiotherapy, represented with a symptomatic right pontine metastasis. Imaging demonstrated intracranial, pulmonary and hilar disease; biopsy of the cranial and lung lesions showed metastatic adenocarcinoma, morphologically similar to the previously-resected scalp DEA. The patient was treated with stereotactic resections of his pontine metastases and adjuvant cranial radiotherapy, then commenced on immunotherapy with pembrolizumab. The patient has completed 21 months of pembrolizumab with a significant radiological response of the pulmonary and hilar disease and nil evidence of intracranial recurrence or further metastases. In this case report, we provide the first evidence of efficacy of immunotherapy in metastatic DEA, demonstrating an excellent and prolonged response of metastatic DEA to pembrolizumab. Further research is required to better establish the role of immunotherapy within the management protocol for this uncommon but aggressive tumour subtype.
DOI: 10.3886/e157982v3
title: Scholarship among Liberal Arts College Economists

description: The dataset reports publications by economics professors at institutions included by US News and World Report among "national liberal arts colleges" in summer 2020. To be included in the data, individuals must have earned a PhD between 1983 and 2012. Each observation is a faculty member-publication. <br><br>Publications were collected from ECONLIT for all members of the population. For approximately 3/4 of the population, we were also able to obtain a CV. For these faculty member, the dataset also reflects publications listed on a CV but not in ECONLIT.<br><br>Faculty member-level information: institutional ranking on the US News list (bracketed), year of faculty member's PhD completion (bracketed), whether the individual is a micro or macroeconomist, and whether the individual's thesis was a collection of essays.<br><br>Publication-level information: year of the publication, whether indexed in ECONLIT, number of authors, 10-year H index for the journal of publication (when available).<br><br>A detailed description of methodology can be found in:<br><b></b>Bourne, Jenny, Nathan D. Grawe, Michael Hemesath, and Maya Jensen. “Scholarly Activity among Economists at Liberal Arts Colleges: A Life Cycle Analysis.” Working Paper (December 2021). Carleton College. https://digitalcommons.carleton.edu/cgi/viewcontent.cgi?article=1014&context=econ_repec<br>
description: Response Rates: ECONLIT covers the entire population.<br><br>We obtained CVs for 77% of faculty members in the database.
description: Professors of economics at "national liberal arts colleges" (as determined by US News and World Report).
description: Faculty members were identified through department webpages. Individuals with titles such as "lecturer" or "visiting professor" were included to excluded those not on the tenure track. Those with emeritus titles were also excluded.<br><br>CVs were largely collected from websites of home departments or other institutions of affiliation (eg, think tanks). We also emailed all faculty in the dataset to ask for updated CVs.<br><br>Information on doctorates was collected from American Economic Association serial publications of “Doctoral Dissertations in Economics” (or “Political Economy”).<br><br>The H index of journals reflect reports by IDEAS on April 9, 2021.
DOI: 10.6084/m9.figshare.24893058
title: Cl.gff3

description: Wampee genome annotation file
DOI: 10.6084/m9.figshare.24893058.v1
title: Cl.gff3

description: Wampee genome annotation file
DOI: 10.17632/ysh5xvc777.1
title: To explore the impact of volatility on stock price trajectories using Geometric Brownian Motion

description: Synopsis: These scenarios investigates the effect of volatility ({of 0.10, 0.14, 0.19, 0.23, 0.28, 0.32, 0.37, 0.41, 0.46, and 0.50}) on stock price simulations through Geometric Brownian Motion (GBM). The simulated stock price trajectory showcases the potential outcomes of a stock's movement over a defined time period.

Key Observations:

• Volatility Impact: As expected, higher volatility leads to a wider range of potential price movements. Increased volatility is represented by a more spread-out and erratic trajectory, signifying higher uncertainty in the stock's future path.
• Fluctuations and Risk: The scenario demonstrates increased fluctuations in stock price with higher volatility. The substantial fluctuations reflect higher risk associated with the stock, implying greater unpredictability in its value.
Interpretation:
• Risk Assessment: Higher volatility, as depicted in this scenario, indicates a riskier investment. The wider spread of potential outcomes emphasizes the uncertainty in the stock's future price.
• Investment Consideration: For risk-averse investors, lower volatility scenarios might be preferable due to their smoother and more predictable price trajectories. Conversely, those seeking higher potential returns might favour scenarios with higher volatility, despite the increased risk.

Take away: This simulation highlights the significant influence of volatility on stock price trajectories. Understanding and assessing volatility is crucial for making informed investment decisions, balancing risk tolerance with potential returns.
DOI: 10.17632/yrz35m9kcc.1
title: Identification of overall wear state of TBM cutterhead

description: Data consists of real-time monitoring data about the tunneling parameters from Shenzhen Metro Line 14. The data set also consists of the cutter wear measurement obtained from opening of the chamber and source code for the calculation of the wear identification indicator using the wavelet decomposition.
DOI: 10.21227/vkx6-fy49
title:  Open-set Occluded Person Identification with mmWave Radar

description: We introduce a new multi-modal dataset comprising point cloud data from mmWave radar, RGB and depth images, collected from 23 human subjects. We use the TI IWR6843ISK-ODS radar for transmitting and receiving radar signals, paired with an Intel RealSense D435 camera for capturing RGB and depth images at the resolution of 420 × 240.  Considering the diverse electromagnetic wave absorption and reflection properties of different materials, our experiment employs three types of obstacles: a clothing rack, a poster, and a potted plant. To broaden the scope of scenarios and comprehensively evaluate radar sensor performance, walking data is collected using the same experimental configuration without obstacles.  To produce radar point clouds, we employ the Cell-Averaging Constant False-Alarm Rate (CA-CFAR) algorithm along with the maximum-energy ridge extraction method.  In our experiment, we have 4 scenarios, where each represents distinct occlusion conditions. Despite minimal data loss, thedataset contains over 300,000 frames of radar signals and over 600,000 RGB and depth images in total.
DOI: 10.17909/k6j3-vm72
title: JWST MIRI Imager SN 1987A

description: We report on the first imaging observations obtained with the Mid-InfraRed Instrument (MIRI).
We build temperature maps and discuss the morphology of the nascent SNR.
DOI: 10.5281/zenodo.10278223
title: InfluHierNVP

description: Raw data for the publication:
Häringer, Marcel et al. Influence of process parameters on the electrochemical properties of hierarchically structured Na3V2(PO4)3/C composites, ChemElectroChem,DOI: 10.1002/celc.202300401
DOI: 10.5281/zenodo.10278224
title: InfluHierNVP

description: Raw data for the publication:
Häringer, Marcel et al. Influence of process parameters on the electrochemical properties of hierarchically structured Na3V2(PO4)3/C composites, ChemElectroChem,DOI: 10.1002/celc.202300401
DOI: 10.15131/shef.data.24374347
title: Dataset for 'Contextual Resources and Digital Attitudes (CResDA) Supporting Technology Adoption: Measurement and Conceptual Validation'

description: This dataset is the cleaned-up dataset for our paper 'Contextual Resources and Digital Attitudes (CResDA) Supporting Technology Adoption: Measurement and Conceptual Validation'. To understand how to work with this datafile, please consult the attached README.txt document.
DOI: 10.15131/shef.data.24374347.v1
title: Dataset for 'Contextual Resources and Digital Attitudes (CResDA) Supporting Technology Adoption: Measurement and Conceptual Validation'

description: This dataset is the cleaned-up dataset for our paper 'Contextual Resources and Digital Attitudes (CResDA) Supporting Technology Adoption: Measurement and Conceptual Validation'. To understand how to work with this datafile, please consult the attached README.txt document.
DOI: 10.6084/m9.figshare.24893277
title: Table S5

description: Read counts from sRNA-seq from the C2C12 myotubes after EL-EPS administered under distinct nutritional conditions.
DOI: 10.6084/m9.figshare.24893277.v1
title: Table S5

description: Read counts from sRNA-seq from the C2C12 myotubes after EL-EPS administered under distinct nutritional conditions.
DOI: 10.6084/m9.figshare.24893274
title: Table S4

description: Read counts from mRNA-seq from the C2C12 myotubes after EL-EPS administered under distinct nutritional conditions.
DOI: 10.6084/m9.figshare.24893274.v1
title: Table S4

description: Read counts from mRNA-seq from the C2C12 myotubes after EL-EPS administered under distinct nutritional conditions.
DOI: 10.6084/m9.figshare.24893271
title: Table S3

description: The top 50 most abundant microRNAs observed from the media-derived extracellular vesicles originated from the C2C12 myotubes.
DOI: 10.6084/m9.figshare.24893271.v1
title: Table S3

description: The top 50 most abundant microRNAs observed from the media-derived extracellular vesicles originated from the C2C12 myotubes.
DOI: 10.6084/m9.figshare.24893268
title: Table S2

description: Pathway analysis conducted using ShinyGO software on stimulated vs. non-stimulated (EPS effect) C2C12 myotubes.
DOI: 10.5281/zenodo.10410540
title: The Arabidopsis Leaf Quantitative Atlas: a cellular and subcellular mapping through unified data integration

description: Additional data accompanying Tolleter et. al. The Arabidopsis Leaf Quantitative Atlas: a cellular and subcellular mapping through unified data integration Quantitative Plant Biology. 2024.

Quantitative analyses and models are required to connect a plant's cellular organization with its metabolism. However, quantitative data are often scattered over multiple studies, and finding such data and converting them into useful information is time consuming. Consequently, there is a need to centralize the available data and to highlight the remaining knowledge gaps. Here, we present a step-by-step approach to manually extract quantitative data from various information sources, and to unify the data format. First, data from Arabidopsis leaf were collated, checked for consistency and correctness, and curated by cross-checking sources. Second, quantitative data were combined by applying calculation rules. They were then integrated into a unique comprehensive, referenced, modifiable and reusable data compendium representing an Arabidopsis reference leaf. This atlas contains the metrics of the 15 cell types found in leaves at the cellular and subcellular levels.

Table_S1_2023_12_12.xlsx: All supplementary data relating to the Arabidopsis Leaf Quantitative Atlas

ChloroKB data export.ipynb: A jupyter notebook containing code to convert Quantitative_data_2023_12_13.xlsx (from http://umr5558-chlorokb.univ-lyon1.fr:8080/ChloroKB_Grails/static/images/csv/Quantitative_data.csv) into Table_S5_2023_12_13.xlsx.

Variable_conversion_table.xlsx ,Localisation_conversion_table.xlsx, Localisation_conversion_table_isolated_organelles.xlsx: Conversion factors required by ChloroKB data export.ipynb for unit conversion.