cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jnilif
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eanus hatchi Lane"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010187-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zd26gk
title: Occurrence Download

description: A dataset containing 22904 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-113.26904 25.62012,-112.33915 17.37407,-100.4932 12.24082,-91.01643 9.0819,-87.46264 3.94865,-94.57022 -1.97433,-89.0421 -9.0819,-79.17047 -16.18947,-72.0629 -24.48164,-74.43209 -34.74814,-77.98588 -50.14788,-68.90398 -61.20411,-61.01857 -46.70558,-42.03502 -32.54324,-31.10855 -6.59484,-42.16046 1.79406,-49.69552 9.68793,-55.65071 23.37038,-79.29932 29.17969,-82.50732 28.95996,-97.36084 26.2793,-99.29443 24.21387,-99.55811 23.02734,-99.11865 21.09375,-98.59131 20.47852,-98.63525 21.09375,-97.93213 20.34668,-97.00928 18.85254,-95.91064 18.2373,-95.20752 17.8418,-95.3833 17.18262,-95.95459 16.91895,-97.229 17.22656,-100.08545 17.97363,-103.68896 20.87402,-104.43604 22.28027,-108.21533 26.2793,-113.26904 26.14746,-113.2251 25.66406,-113.26904 25.62012))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "TaxonKey is Aedes albopictus (Skuse, 1894)",
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)"
 ]
 }
 ]
}

 The dataset includes 22904 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251754-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a4vsfj
title: Occurrence Download

description: A dataset containing 3585 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linaria dalmatica (L.) Mill."
 ]
}

 The dataset includes 3585 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217727-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.989frx
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "License is CC-BY 4.0",
 "License is CC-BY-NC 4.0"
 ]
 },
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Dendrortyx macroura (Jardine & Selby, 1828)"
 ]
}

 The dataset includes 40 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0314917-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sifq1i
title: Occurrence Download

description: A dataset containing 350 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinella dorbignyi (Duméril & Bibron, 1841)"
 ]
}

 The dataset includes 350 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010187-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.htnexj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oreochromis macrochir (Boulenger, 1912), Oreochromis microchir (Boulenger, 1912), Oreochromis macrochir (Boulenger, 1912), Oreochromis microchir (Boulenger, 1912), Oreochromis macrochir (Boulenger, 1912), Oreochromis microchir (Boulenger, 1912))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Country is Burkina Faso",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273204-200613084148143/datasets/export for details.
DOI: 10.15468/dl.wkfbum
title: Occurrence Download

description: A dataset containing 33840 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus Blume"
 ]
}

 The dataset includes 33840 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033011-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9whqs3
title: Occurrence Download

description: A dataset containing 33849 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melia azedarach L."
 ]
}

 The dataset includes 33849 records from 539 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308997-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxvrd5
title: Occurrence Download

description: A dataset containing 11802 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "TaxonKey is Apatura iris (Linnaeus, 1758)"
 ]
}

 The dataset includes 11802 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010188-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fr596n
title: Occurrence Download

description: A dataset containing 18761 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primula vulgaris Hill"
 ]
}

 The dataset includes 18761 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217745-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbuppk
title: Occurrence Download

description: A dataset containing 1878 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cestrum aurantiacum Lindl."
 ]
}

 The dataset includes 1878 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290231-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7zjyr
title: Occurrence Download

description: A dataset containing 691 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.33673 -0.95396,-76.07097 -0.3586,-76.76701 -0.48747,-76.92567 -0.90016,-77.03553 -1.27118,-76.91439 -1.58519,-75.89027 -1.92767,-75.33673 -0.95396))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Actinopterygii"
 ]
}

 The dataset includes 691 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001594-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekbdg3
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eptesicus andinus J.A.Allen, 1914",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 61 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010188-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cdxmm8
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "TaxonKey is Daboecia cantabrica (Huds.) C.Koch"
 ]
}

 The dataset includes 164 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197080-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xbbrxo
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Sciurus alleni Nelson, 1898",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 196 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005397-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pl14my
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bothrops pubescens (Cope, 1870)"
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010188-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mytqy
title: Occurrence Download

description: A dataset containing 28684 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limonium vulgare Mill."
 ]
}

 The dataset includes 28684 records from 228 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217708-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.6371123
title: Input files for SICOPOLIS v5-dev

description: Archives containing the input files for SICOPOLIS v5-dev:
ant.tgz - Antarctica,
grl.tgz - Greenland,
asf.tgz - Austfonna,
nhem.tgz - Northern hemisphere,
scand.tgz - Scandinavia,
tibet.tgz - Tibet,
nmars.tgz - North polar cap of Mars,
smars.tgz - South polar cap of Mars,
eismint.tgz - EISMINT (Phase 2 SGE and modifications),
heino.tgz - ISMIP HEINO,
mocho.tgz - Mocho-Choshuenco ice cap.


Manual download of these archives is not required! This will happen automatically when SICOPOLIS v5-dev is installed.
DOI: 10.5281/zenodo.6371122
title: Input files for SICOPOLIS v26

description: Archives containing the input files (and corresponding READMEs including references) for SICOPOLIS: 'ant.tgz' - Antarctica, 'grl.tgz' - Greenland, 'nhem.tgz' - Entire northern hemisphere, 'scand.tgz' - Fennoscandia/Eurasia, 'tibet.tgz' - Tibet, 'asf.tgz' - Austfonna, 'mocho.tgz' - Mocho-Choshuenco ice cap, 'eismint.tgz' - EISMINT (Phase 2 SGE and modifications), 'heino.tgz' - ISMIP HEINO, 'nmars.tgz' - North polar cap of Mars, 'smars.tgz' - South polar cap of Mars.

Manual download of these archives is not required! This will happen automatically when SICOPOLIS is installed.
DOI: 10.15468/dl.8zwgfk
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trigonostigma heteromorpha"
 ]
}

 The dataset includes 333 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018002-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pkecxd
title: Occurrence Download

description: A dataset containing 295 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cronartium ribicola",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 295 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018003-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s3qhzf
title: Occurrence Download

description: A dataset containing 432 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Epimedium brevicornu"
 ]
}

 The dataset includes 432 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018004-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vswnmt
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mnemiopsis leidyi",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018006-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xwm7cu
title: Occurrence Download

description: A dataset containing 864 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aeonium haworthii"
 ]
}

 The dataset includes 864 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018005-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15280599
title: TCRscape: A Single-Cell Multi-Omic TCR Profiling Toolkit

description: Single-cell multi-omics has transformed T-cell biology by enabling the simultaneous analysis of T-cell receptor (TCR) sequences, transcriptomes, and surface proteins at the resolution of individual cells. These capabilities are critical for identifying antigen-specific T-cells and accelerating the development of TCR-based immunotherapies. Here, we present TCRscape, an open-source Python 3 tool tailored for BD Rhapsody™ data, which performs high-resolution TCR clonotype discovery and quantification. TCRscape integrates full-length TCR sequence data with gene expression profiles and V(D)J gene segment usage to enable multimodal clustering of αβ and γδ T-cell populations. It outputs Seurat-compatible matrices, facilitating downstream visualization and analysis in standard single-cell analysis environments. By bridging clonotype detection with immune cell transcriptome and proteome profiling, TCRscape supports rapid identification of dominant T-cell clones and their functional phenotypes, offering a powerful resource for immune monitoring and TCR-engineered therapeutic development.
DOI: 10.5281/zenodo.16220920
title: TCRscape: A Single-Cell Multi-Omic TCR Profiling Toolkit

description: Single-cell multi-omics has transformed T-cell biology by enabling the simultaneous analysis of T-cell receptor (TCR) sequences, transcriptomes, and surface proteins at the resolution of individual cells. These capabilities are critical for identifying antigen-specific T-cells and accelerating the development of TCR-based immunotherapies. Here, we present TCRscape, an open-source Python 3 tool tailored for BD Rhapsody™ data, which performs high-resolution TCR clonotype discovery and quantification. TCRscape integrates full-length TCR sequence data with gene expression profiles and V(D)J gene segment usage to enable multimodal clustering of αβ and γδ T-cell populations. It outputs Seurat-compatible matrices, facilitating downstream visualization and analysis in standard single-cell analysis environments. By bridging clonotype detection with immune cell transcriptome and proteome profiling, TCRscape supports rapid identification of dominant T-cell clones and their functional phenotypes, offering a powerful resource for immune monitoring and TCR-engineered therapeutic development.
DOI: 10.15468/dl.bxt4t9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus mykiss",
 "Country is Uruguay",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018007-250717081556266/datasets/export for details.
DOI: 10.5281/zenodo.16219866
title: 2D and 3D binary-single Tsunami simulation outcomes

description: Pandas-ready hdf5 files in the Tsunami output format. Reduced sets of only 10^5 simulations. Includes both 3D and 2D simulations. See Manwadkar V., Kol B., Trani A.A., Leigh N.W.C., 2021, MNRAS, 506, 692. doi:10.1093/mnras/stab1689
DOI: 10.15468/dl.fwh8v4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mnemiopsis leidyi",
 "Country is Turkmenistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018008-250717081556266/datasets/export for details.
DOI: 10.15468/dl.sqjn4a
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAJ8936"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018010-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6asveq
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mnemiopsis leidyi",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018009-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxqaem
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus mykiss",
 "Country is Venezuela (Bolivarian Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018011-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmwp54
title: Occurrence Download

description: A dataset containing 344 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aeonium davidbramwellii"
 ]
}

 The dataset includes 344 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018012-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmzeb8
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gremmeniella abietina",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018013-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8x28gn
title: Occurrence Download

description: A dataset containing 22313 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia flavicoma"
 ]
}

 The dataset includes 22313 records from 346 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018014-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqxzem
title: Occurrence Download

description: A dataset containing 2139278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is one of (BRA.13_1, BRA.13.460_2, BRA.13.540_2)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2139278 records from 1038 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017991-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4b8xwy
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rasbora heteromorpha"
 ]
}

 The dataset includes 136 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018015-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hv7xha
title: Occurrence Download

description: A dataset containing 3805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((18.65545 46.99074,69.11003 46.99074,69.11003 67.16370,18.65545 67.16370,18.65545 46.99074))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dianthus barbatus"
 ]
}

 The dataset includes 3805 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018016-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7vs9r
title: Occurrence Download

description: A dataset containing 618 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "Geometry POLYGON((-81.84125 -7.23888,-78.9656 -7.23888,-78.9656 -3.35405,-81.84125 -3.35405,-81.84125 -7.23888))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sarcoramphus papa"
 ]
}

 The dataset includes 618 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002845-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0157641.10fu
title: SH0157641.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.