cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/inscriptifact-ouc110590812
title: Persepolis Fortification Aramaic Text 238, PFAT 238

description: [Text Description:] Administrative text with seal PFATS 0257 ❧ [Text or Publication Number Note:] PFAT 238, Bowman 238 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with incised inscription. Seal impression PFATS 0257 on obverse, reverse.
DOI: 10.25549/jrbm-c91-1427
title: Kankai ibun, vol. 3, 1807

description: Kankai ibun, [1807], volume 3 = Description and travel of circumnavigation of seas, [1807], volume 3 = 環海 異聞 三 文化 4. Volume three of a manuscript by Gentaku Ōtsuki and Kōkyō Shimura who drew from four Japanese fishermen the story of their voyage around the world during repeated interviews. The Kankai Ibun is an account of their journey when they were sent off-course en route to the capital, Edo. The fishermen were rescued by a Russian ship and taken to late 18th / early 19th century Europe and, most especially, Russia.; The cargo ship, Wakamiyamaru, left from the port of Ishimaki in Sendai-han, today’s Miyagi Prefecture, in Japan carrying rice and lumber with 16 crew members for Edo, today’s Tokyo, on November 27th, 1793. Shipwrecked and drifted in the Pacific Ocean for half a year, they finally landed in one of the islands of the Andreanof Islands, a part of the Aleutian Islands on May 10th, 1794. They were transferred to Irkutsk by Russians where they stayed until the spring of 1803. They were then called in by Alexander I of Russia to St. Petersburg where they stayed from April to June in 1803, and from where they started their journey back home. They were included in the Rezanov mission on the first Russian global circumnavigation by a ship Nadezhda. It took them 16 months to reach the port of Nagasaki, Japan in September, 1804 since they left in June, 1803. Of the sixteen, five crewmen got on board. Four returned home in Sendai; one, who had become an interpreter, returned to Russia with Rezanov.
DOI: 10.25549/inscriptifact-ouc110594709
title: Persepolis Fortification Anepigraphic Tablet 0848.104, PFAnep 0848.104

description: [Text Description:] Administrative text with seals PFS 1312s; PFUTS 0049s ❧ [Text or Publication Number Note:] PFAnep 0848.104, PFUT 0848-104 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions PFS 1312s on obverse; PFUTS 0049s on bottom edge.
DOI: 10.25549/jrbm-c91-1091
title: Kankai ibun, vol. 4, 1807

description: Kankai ibun, [1807], volume 4 = Description and travel of circumnavigation of seas, [1807], volume 4 = 環海 異聞 四 文化 4. Volume four of a manuscript by Gentaku Ōtsuki and Kōkyō Shimura who drew from four Japanese fishermen the story of their voyage around the world during repeated interviews. The Kankai Ibun is an account of their journey when they were sent off-course en route to the capital, Edo. The fishermen were rescued by a Russian ship and taken to late 18th / early 19th century Europe and, most especially, Russia.; The cargo ship, Wakamiyamaru, left from the port of Ishimaki in Sendai-han, today’s Miyagi Prefecture, in Japan carrying rice and lumber with 16 crew members for Edo, today’s Tokyo, on November 27th, 1793. Shipwrecked and drifted in the Pacific Ocean for half a year, they finally landed in one of the islands of the Andreanof Islands, a part of the Aleutian Islands on May 10th, 1794. They were transferred to Irkutsk by Russians where they stayed until the spring of 1803. They were then called in by Alexander I of Russia to St. Petersburg where they stayed from April to June in 1803, and from where they started their journey back home. They were included in the Rezanov mission on the first Russian global circumnavigation by a ship Nadezhda. It took them 16 months to reach the port of Nagasaki, Japan in September, 1804 since they left in June, 1803. Of the sixteen, five crewmen got on board. Four returned home in Sendai; one, who had become an interpreter, returned to Russia with Rezanov.
DOI: 10.25549/inscriptifact-ouc110590121
title: Persepolis Fortification Aramaic Text 215, PFAT 215

description: [Text Description:] Administrative text with seals PFS 0078; PFATS 0246s ❧ [Text or Publication Number Note:] PFAT 215, Bowman 215 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions PFS 0078 on obverse, reverse; PFATS 0246s on flat edge.
DOI: 10.25549/inscriptifact-ouc110590808
title: Persepolis Fortification Aramaic Text 238, PFAT 238

description: [Text Description:] Administrative text with seal PFATS 0257 ❧ [Text or Publication Number Note:] PFAT 238, Bowman 238 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with incised inscription. Seal impression PFATS 0257 on obverse, reverse.
DOI: 10.25549/jrbm-c91-1329
title: Kankai ibun, vol. 3, 1807

description: Kankai ibun, [1807], volume 3 = Description and travel of circumnavigation of seas, [1807], volume 3 = 環海 異聞 三 文化 4. Volume three of a manuscript by Gentaku Ōtsuki and Kōkyō Shimura who drew from four Japanese fishermen the story of their voyage around the world during repeated interviews. The Kankai Ibun is an account of their journey when they were sent off-course en route to the capital, Edo. The fishermen were rescued by a Russian ship and taken to late 18th / early 19th century Europe and, most especially, Russia.; The cargo ship, Wakamiyamaru, left from the port of Ishimaki in Sendai-han, today’s Miyagi Prefecture, in Japan carrying rice and lumber with 16 crew members for Edo, today’s Tokyo, on November 27th, 1793. Shipwrecked and drifted in the Pacific Ocean for half a year, they finally landed in one of the islands of the Andreanof Islands, a part of the Aleutian Islands on May 10th, 1794. They were transferred to Irkutsk by Russians where they stayed until the spring of 1803. They were then called in by Alexander I of Russia to St. Petersburg where they stayed from April to June in 1803, and from where they started their journey back home. They were included in the Rezanov mission on the first Russian global circumnavigation by a ship Nadezhda. It took them 16 months to reach the port of Nagasaki, Japan in September, 1804 since they left in June, 1803. Of the sixteen, five crewmen got on board. Four returned home in Sendai; one, who had become an interpreter, returned to Russia with Rezanov.
DOI: 10.25549/inscriptifact-ouc110590117
title: Persepolis Fortification Aramaic Text 215, PFAT 215

description: [Text Description:] Administrative text with seals PFS 0078; PFATS 0246s ❧ [Text or Publication Number Note:] PFAT 215, Bowman 215 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions PFS 0078 on obverse, reverse; PFATS 0246s on flat edge.
DOI: 10.25549/inscriptifact-ouc110590806
title: Persepolis Fortification Aramaic Text 238, PFAT 238

description: [Text Description:] Administrative text with seal PFATS 0257 ❧ [Text or Publication Number Note:] PFAT 238, Bowman 238 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with incised inscription. Seal impression PFATS 0257 on obverse, reverse.
DOI: 10.25549/jrbm-c91-1405
title: Kankai ibun, vol. 3, 1807

description: Kankai ibun, [1807], volume 3 = Description and travel of circumnavigation of seas, [1807], volume 3 = 環海 異聞 三 文化 4. Volume three of a manuscript by Gentaku Ōtsuki and Kōkyō Shimura who drew from four Japanese fishermen the story of their voyage around the world during repeated interviews. The Kankai Ibun is an account of their journey when they were sent off-course en route to the capital, Edo. The fishermen were rescued by a Russian ship and taken to late 18th / early 19th century Europe and, most especially, Russia.; The cargo ship, Wakamiyamaru, left from the port of Ishimaki in Sendai-han, today’s Miyagi Prefecture, in Japan carrying rice and lumber with 16 crew members for Edo, today’s Tokyo, on November 27th, 1793. Shipwrecked and drifted in the Pacific Ocean for half a year, they finally landed in one of the islands of the Andreanof Islands, a part of the Aleutian Islands on May 10th, 1794. They were transferred to Irkutsk by Russians where they stayed until the spring of 1803. They were then called in by Alexander I of Russia to St. Petersburg where they stayed from April to June in 1803, and from where they started their journey back home. They were included in the Rezanov mission on the first Russian global circumnavigation by a ship Nadezhda. It took them 16 months to reach the port of Nagasaki, Japan in September, 1804 since they left in June, 1803. Of the sixteen, five crewmen got on board. Four returned home in Sendai; one, who had become an interpreter, returned to Russia with Rezanov.
DOI: 10.25549/inscriptifact-ouc110590103
title: Persepolis Fortification Aramaic Text 215, PFAT 215

description: [Text Description:] Administrative text with seals PFS 0078; PFATS 0246s ❧ [Text or Publication Number Note:] PFAT 215, Bowman 215 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions PFS 0078 on obverse, reverse; PFATS 0246s on flat edge.
DOI: 10.25549/inscriptifact-ouc110590801
title: Persepolis Fortification Aramaic Text 237, PFAT 237

description: [Text Description:] Administrative text with seal PFATS 0013 ❧ [Text or Publication Number Note:] PFAT 237, Bowman 237 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink and incised inscription. Seal impression PFATS 0013 on obverse, upper edge, reverse, bottom edge, flat edge.
DOI: 10.25549/jrbm-c91-1447
title: Kankai ibun, vol. 3, 1807

description: Kankai ibun, [1807], volume 3 = Description and travel of circumnavigation of seas, [1807], volume 3 = 環海 異聞 三 文化 4. Volume three of a manuscript by Gentaku Ōtsuki and Kōkyō Shimura who drew from four Japanese fishermen the story of their voyage around the world during repeated interviews. The Kankai Ibun is an account of their journey when they were sent off-course en route to the capital, Edo. The fishermen were rescued by a Russian ship and taken to late 18th / early 19th century Europe and, most especially, Russia.; The cargo ship, Wakamiyamaru, left from the port of Ishimaki in Sendai-han, today’s Miyagi Prefecture, in Japan carrying rice and lumber with 16 crew members for Edo, today’s Tokyo, on November 27th, 1793. Shipwrecked and drifted in the Pacific Ocean for half a year, they finally landed in one of the islands of the Andreanof Islands, a part of the Aleutian Islands on May 10th, 1794. They were transferred to Irkutsk by Russians where they stayed until the spring of 1803. They were then called in by Alexander I of Russia to St. Petersburg where they stayed from April to June in 1803, and from where they started their journey back home. They were included in the Rezanov mission on the first Russian global circumnavigation by a ship Nadezhda. It took them 16 months to reach the port of Nagasaki, Japan in September, 1804 since they left in June, 1803. Of the sixteen, five crewmen got on board. Four returned home in Sendai; one, who had become an interpreter, returned to Russia with Rezanov.
DOI: 10.25549/inscriptifact-ouc110590091
title: Persepolis Fortification Aramaic Text 215, PFAT 215

description: [Text Description:] Administrative text with seals PFS 0078; PFATS 0246s ❧ [Text or Publication Number Note:] PFAT 215, Bowman 215 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions PFS 0078 on obverse, reverse; PFATS 0246s on flat edge.
DOI: 10.25549/inscriptifact-ouc110590799
title: Persepolis Fortification Aramaic Text 238, PFAT 238

description: [Text Description:] Administrative text with seal PFATS 0257 ❧ [Text or Publication Number Note:] PFAT 238, Bowman 238 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with incised inscription. Seal impression PFATS 0257 on obverse, reverse.
DOI: 10.15468/dl.2mkqq5
title: Occurrence Download

description: A dataset containing 4439881 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-21 18,10 18,10 61,-21 61,-21 18))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mollusca",
 "Year 1975-2025"
 ]
}

 The dataset includes 4439881 records from 3121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011813-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.294x86
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"USA.1.26_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 18 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007121-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14633164
title: Script for setting HMSC models

description: AAA
DOI: 10.5281/zenodo.14633177
title: Script for setting macroalgal and invertebrates HMSC models

description: We provide here a R-script and raw data files for setting both HMSC models, i.e., macroalgal and invertebrates. 

The obligatory data for HMSC-analyses includes a matrix of species occurrences (Y_algae and Y_invr, respectively) and a matrix of environmental covariates (X-Data). Additional and optional data include information about macroalgae and invertebrates traits (TrData_algae and TrData_invr, respectively) as well as phylogenetic relationships (my.taxonomy_algae and my taxonomy_invr, respectively), and information about the spatiotemporal context of the sampling design (studyDesing).
DOI: 10.5281/zenodo.14633217
title: Twenty-three years of convergence in community responses along a large geographic gradient

description: Abstract: Understanding how multispecies assemblages jointly respond to environmental fluctuations is one of the main challenges for modern ecology. Using Hierarchical Modelling of Species Communities (HMSC), we aimed to disentangle spatial and temporal changes over the past two decades in the composition of intertidal zone communities spread across nine-degrees of latitude along the Humboldt upwelling ecosystem. We found that taxonomic classification and species traits were weakly associated with species responses to seawater temperature variability patterns. However, there has been a consistent increase in the occurrence of macroalgal and invertebrate species across the region. No species decreased their occurrence over time. The occurrence of different macroalgal species was more sensitive to mean sea-surface-temperature than invertebrates, and their responses shifted from positive in the north to negative in the southern sites. Our findings suggest a lack of community-wide changes, which may be modulated by the regional cooling driven by the intensification of coastal upwelling.
description: README

This repository includes: 

Six R scripts for setting up, fitting and postprocessing the HMSC analyses for intertidal species. These scripts must be executed in the specified order, i.e., S1, S2, S3, S4, S5, and S6. These files encompass data from 22 field sites surveyed between 2000 and 2023 across nine degrees of latitude along the Chilean coast.

The essential data for HMSC analyses include (see Ovaskainen & Abrego 2020 for details):

1) Matrices of intertidal species occurrences of macroalgae and invertebrates (Y_algae and Y_invr, respectively)

2) A matrix of environmental covariates (X_Data).

3) Macroalgal and invertebrate traits (TrData_algae and TrData_invr, respectively).

4) Phylogenetic-taxonomic relationships (my.taxonomy_algae and my.taxonomy_invr, respectively).

5) Spatiotemporal sampling design (studyDesign).

Ensure that your working directory includes the following folders: data, models, and results. Save the raw data file (`raw_data_oros_etal25`) in the "data" folder.

Required R packages (additional packages may be required, as detailed in individual scripts):

install.packages("ape")install.packages("Hmsc")

--

There are eight data.frames contained in "raw_data_oros_etal25":

First and second: "my.taxonomy_algae" and "my.taxonomy_invr".

Descriptions: each file contains a table with 6 columns.

"kingdom""phylum""family""genus""species"

Third: "studyDesign".

Description: the file contains a table with 3 columns.

"site""bench""year"

Fourth and Fifth: "TrData_algae" and "TrData_invr".

Descriptions: each file contains a table with 3 and 4 columns, respectively.

"life_cycle""max_length""lifespan"

"tiering""feeding""larva""max_size"

Sixth: "XData".

Description: the file contains a table with 4 columns.

"year""height""ann_anom""ann_mean"Seventh and eighth: "Y_algae" and "Y_invr".

Description: species abundance matrices with 47 spp (Y_algae) and 51 spp (Y_invr), respectively.
DOI: 10.6084/m9.figshare.29086376
title: This is data that was collected to examine the antecedents of knowledge worker productivity in Uganda

description: The study was about examining the drivers of knowledge worker productivity in Uganda. The population used in the study was that of knowledge workers from ICT sector.
DOI: 10.15468/dl.tbpc4k
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.05755 41.48614,2.02983 41.46538,2.00211 41.4553,2.00463 41.43264,2.01555 41.41626,2.02563 41.39043,2.04327 41.37909,2.07267 41.38224,2.09871 41.38413,2.11383 41.39547,2.12811 41.41563,2.14574 41.42382,2.15666 41.4383,2.17346 41.44523,2.18858 41.45027,2.18018 41.46538,2.16338 41.48426,2.14071 41.49684,2.12811 41.50628,2.10375 41.50187,2.06931 41.49558,2.05755 41.48614))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cistus ladanifer L."
 ]
}

 The dataset includes 70 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001562-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14592301
title: Human intestinal Bacteria Collection (HiBC):  Isolates and genomes metadata

description: The Human intestinal Bacteria Collection (HiBC) is a collection of bacterial strains, isolated from the human gut for which 16S rRNA gene sequences, genome sequences and culture conditions are made available to the research community. In addition to previously described bacteria, we include strains that represent novel species which have been taxonomically described and validly named, or will be in the future. This collection will be updated regularly.

This dataset includes the taxonomy of the isolates, as well as metadata regarding their cultivation and isolation. We also provide metadata regarding the sequencing, genome assembly process and the biological sequences.

UPDATE v5: The accessions number for the genomes on INSDC databases are added under the column Accession. Plus two typos in the risk group column have been corrected as follow:



CLA-AA-H173: from Risk Group 4 (!) to 2 like the other strain of Sutterella wadsworthensis

CLA-AA-H198: from Risk Group 4 (!) to 1 like the other Bifidobacterium species.


UPDATE v4: Only the taxonomy of a couple of isolates has been changed, as follow:



CLA-ER-H4: Collinsella sp900547855 instead of Collinsella sp900544645

CLA-AA-H142: Pilosibacter fragilis (f__Clostridiaceae) instead of Sakamotonia hominis gen. nov. (f__Lachnospiraceae)

CLA-AA-H58: Pilosibacter fragilis (f__Clostridiaceae) instead of Sakamotonia hominis gen. nov. (f__Lachnospiraceae)

CLA-AA-H89B: Lachnospira intestinalis sp. nov. instead of Lachnospira hominis sp. nov.

CLA-JM-H10: Lachnospira hominis sp. nov. instead of Lachnospira intestinalis sp. nov.

CLA-JM-H7B: Faecalibacterium taiwanense instead of Faecalibacterium faecis sp. nov.

CLA-JM-H45: Merdimmobilis hominis instead of Hominicola intestinalis gen. nov.


UPDATE v3: The genome of one of our isolate had been unfortunately swapped. This mistake has been now corrected on Zenodo and Coscine. The genome of Segatella sinensis CLA-AA-H117 should be considered correct with 103 contigs and 3 671 232 nt. Please note that the genome available at the NCBI is the correct one (GCA_040324585.2). Two typos regarding taxonomy have been corrected as well: Maccoya intestinihominis has been corrected to Maccoyia intestinihominis and Faecousia faecis to Faecousia intestinalis.