cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12518852.v1
title: Additional file 2 of Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia

description: Additional file 2. GO analysis of upregulated CPSR and downregulated VSR genes. Gene ontology (GO) enrichment analysis was performed on the upregulated CPSR genes or the downregulated VSR genes using DAVID Bioinformatics Resources 6.8. GO analysis identifies terms relating to the biological process, molecular function, or cellular component that are significantly enriched among a list of genes. Indented terms indicate child terms, or subcategories, of the term listed above, with the parent term left-aligned. Note that the degree of indention of each term does not reflect absolute GO term level within each category. Count is the number of genes corresponding to each GO term. Percent is the count / total considered in analysis. FDR is the false discovery rate-corrected EASE enrichment score to account for multiple testing. Only terms with FDR
DOI: 10.6084/m9.figshare.12518765
title: Additional file 2 of The psychometric properties of PHQ-4 anxiety and depression screening scale among out of school adolescent girls and young women in Tanzania: a cross-sectional study

description: Additional file 2. Minimal dataset
DOI: 10.6084/m9.figshare.12518765.v1
title: Additional file 2 of The psychometric properties of PHQ-4 anxiety and depression screening scale among out of school adolescent girls and young women in Tanzania: a cross-sectional study

description: Additional file 2. Minimal dataset
DOI: 10.6084/m9.figshare.12518690
title: Additional file 1 of Implementing sequence-based antigenic distance calculation into immunological shape space model

description: Additional file 1.
DOI: 10.6084/m9.figshare.12518690.v1
title: Additional file 1 of Implementing sequence-based antigenic distance calculation into immunological shape space model

description: Additional file 1.
DOI: 10.6084/m9.figshare.12518564
title: JVASP-18016 to JVASP-18638

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.12518483
title: Gene database for Escherichia coli K-12

description: Commensal in the gut, the Gram-negative rod-shaped <i>Escherichia coli</i> is perhaps the most familiar of the common bacteria that people knows about. Indeed, from a pathogen involved in food poisoning to a biotechnology workhorse producing useful products, the facultative anaerobic <i>E. coli</i> bacterium has received intense research scrutiny into varied aspects of its metabolism and genetic repertoire. Used as a model organism for understanding fundamental biological questions and a microbial chassis for biotechnology purposes, <i>E. coli</i> continues to withhold secrets important to furthering our understanding of biology or developing better biotechnology platforms. This work reports the gene database of <i>E. coli</i> K-12 obtained through parsing the annotated genome sequence of the bacterium from Genbank. Comprising gene name, gene function descriptor, and gene sequence, the gene database of <i>E. coli</i> K-12 should find use in a variety of molecular cloning and genome editing workflows seeking to understand functional genomics or to exploit the rich genetic repertoire of the organism for biotechnology purposes.
DOI: 10.6084/m9.figshare.12518456
title: Table S4. Placenta receptors and ligands sexually dimorphic in both bulk and single cell RNA sequencing

description: Human placenta receptors and ligands from Figure 1 Bulk RNA-Seq (P&lt;0.05 & FC&gt;1.2) which are also significantly sex different in specific cell types (FDR&lt;0.1). Placentas in bulk RNA-Seq and scRNA-Seq are independent cohorts. Upregulation direction is denoted by row colors: pink=female upregulated, blue=male upregulated. Asterisk (*) = upstream regulator of all bulk RNA-seq receptors and ligands sexually dimorphic at P&lt;0.05. APCs=Antigen Presenting Cells. FC=Fold-Change. FDR=Benjamini-Hochberg False Discovery Rate.
DOI: 10.6084/m9.figshare.12518456.v2
title: Table S4. Placenta receptors and ligands sexually dimorphic in both bulk and single cell RNA sequencing

description: Human placenta receptors and ligands from Figure 1 Bulk RNA-Seq (P&lt;0.05 & FC&gt;1.2) which are also significantly sex different in specific cell types (FDR&lt;0.1). Placentas in bulk RNA-Seq and scRNA-Seq are independent cohorts. Upregulation direction is denoted by row colors: pink=female upregulated, blue=male upregulated. Asterisk (*) = upstream regulator of all bulk RNA-seq receptors and ligands sexually dimorphic at P&lt;0.05. APCs=Antigen Presenting Cells. FC=Fold-Change. FDR=Benjamini-Hochberg False Discovery Rate.
DOI: 10.6084/m9.figshare.12518414
title: NA1

description: NA12
DOI: 10.6084/m9.figshare.12518456.v1
title: Table S4. Placenta receptors and ligands sexually dimorphic in both bulk and single cell RNA sequencing

description: Human placenta receptors and ligands from Figure 1 Bulk RNA-Seq (P&lt;0.05 & FC&gt;1.2) which are also significantly sex different in specific cell types (FDR&lt;0.1). Placentas in bulk RNA-Seq and scRNA-Seq are independent cohorts. Upregulation direction is denoted by row colors: pink=female upregulated, blue=male upregulated. Asterisk (*) = upstream regulator of all bulk RNA-seq receptors and ligands sexually dimorphic at P&lt;0.05. APCs=Antigen Presenting Cells. FC=Fold-Change. FDR=Benjamini-Hochberg False Discovery Rate.
DOI: 10.6084/m9.figshare.12518390
title: Tethys Map Document, mpk file

description: Map file for ArcGIS 10.4 containing all shapefiles and layers for the maps in Ferguson et al. 2020. Published in JGR Planets. Requires an ArcGIS license to open.
DOI: 10.6084/m9.figshare.12518354
title: JVASP-17046 to JVASP-18015

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.12518360
title: Supplementary Data 1 Interaction and integration among behaviors of adult DROSOPHILA in nature

description: Geographical data from sampling locations<b>1. Chillan </b>Country: ChileCoordinates UTM: YE54Geographical coordinates in decimal degrees (WGS84)<br>Latitude: -36.600<br>Longitude: -72.117<br>Geographical coordinates in degrees minutes seconds (WGS84)<br>Latitude: <b>-36 36' 00''</b> Longitude: <b>-72 07' 00''</b><br><b>2. Quillón</b> Country: ChileCoordinatesUTM: YE23<br>Geographical coordinates in decimal degrees (WGS84)<br>Latitude: -36.733<br>Longitude: -72.467<br>Geographical coordinates in degrees minutes seconds (WGS84)<br>Latitude: -<b>36 44' 00''</b> Longitude: -<b>72 28' 00''</b>
DOI: 10.6084/m9.figshare.12518414.v1
title: SuperMatrix_50BUSCO_dna_prank_trim_12.fasta

description: Test
DOI: 10.6084/m9.figshare.12518414.v2
title: NA1

description: NA12
DOI: 10.6084/m9.figshare.12518351
title: JVASP-16559 to JVASP-17405

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.12518390.v1
title: Tethys Map file

description: Map file for ArcGIS 10.4 containing all shapefiles and layers for the maps in Ferguson et al. 2020. Published in JGR Planets. Requires an ArcGIS license to open.
DOI: 10.6084/m9.figshare.12518360.v2
title: Supplementary Data 1 Interaction and integration among behaviors of adult DROSOPHILA in nature

description: Geographical data from sampling locations<b>1. Chillan </b>Country: ChileCoordinates UTM: YE54Geographical coordinates in decimal degrees (WGS84)<br>Latitude: -36.600<br>Longitude: -72.117<br>Geographical coordinates in degrees minutes seconds (WGS84)<br>Latitude: <b>-36 36' 00''</b> Longitude: <b>-72 07' 00''</b><br><b>2. Quillón</b> Country: ChileCoordinatesUTM: YE23<br>Geographical coordinates in decimal degrees (WGS84)<br>Latitude: -36.733<br>Longitude: -72.467<br>Geographical coordinates in degrees minutes seconds (WGS84)<br>Latitude: -<b>36 44' 00''</b> Longitude: -<b>72 28' 00''</b>
DOI: 10.6084/m9.figshare.12518360.v1
title: Supplementary Data 1 Interaction and integration among behaviors of adult DROSOPHILA in nature

description: Geographical data from sampling locations<b>1. Chillan </b>Country: ChileCoordinates UTM: YE54Geographical coordinates in decimal degrees (WGS84)<br>Latitude: -36.600<br>Longitude: -72.117<br>Geographical coordinates in degrees minutes seconds (WGS84)<br>Latitude: <b>-36 36' 00''</b> Longitude: <b>-72 07' 00''</b><br><b>2. Quillón</b> Country: ChileCoordinatesUTM: YE23<br>Geographical coordinates in decimal degrees (WGS84)<br>Latitude: -36.733<br>Longitude: -72.467<br>Geographical coordinates in degrees minutes seconds (WGS84)<br>Latitude: -<b>36 44' 00''</b> Longitude: -<b>72 28' 00''</b>
DOI: 10.6084/m9.figshare.12518390.v2
title: Tethys Map Document, mpk file

description: Map file for ArcGIS 10.4 containing all shapefiles and layers for the maps in Ferguson et al. 2020. Published in JGR Planets. Requires an ArcGIS license to open.
DOI: 10.6084/m9.figshare.12517883
title: JVASP-15978 to JVASP-16558

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.12517715
title: sixTissueSegmentationWeights.h5

description: (WIP) Six-tissue segmentation weights
DOI: 10.6084/m9.figshare.12517733
title: dktLabeling.h5

description: (WIP): DKT inner labeling
DOI: 10.6084/m9.figshare.12517715.v1
title: sixTissueSegmentationWeights.h5

description: (WIP) Six-tissue segmentation weights
DOI: 10.6084/m9.figshare.12517733.v1
title: dktLabeling.h5

description: (WIP): DKT inner labeling
DOI: 10.6084/m9.figshare.12517532
title: Spruce Beetle Temperature vs Drought Isodemographic

description: All_ES_trees file contains characteristics on all Engelmann spruce from the study sites. Data were used to identify early/late dying trees and includes tree-level data for date of death model.<br>ClimateData file includes study site locations and associated climate data<br>Isotope_Analysis file includes D13C and associated data used in the main model.
DOI: 10.6084/m9.figshare.12517673
title: gene_counts.txt

description: Count expression data
DOI: 10.6084/m9.figshare.12517673.v1
title: gene_counts.txt

description: Count expression data
DOI: 10.6084/m9.figshare.12516640
title: hgcAB_concatenated_alignment

description: Concatenated alignment of 650 select hgcAB sequences used in phylogeny with 4 fused hgcAB sequences to root the tree
DOI: 10.6084/m9.figshare.12515584
title: R Scripts for simulating and optimizing landscape resistance surfaces

description: R scripts for simulations used to evaluate the R package ResistanceGA
DOI: 10.6084/m9.figshare.12515526
title: Damage repair versus aging in an individual-based model of biofilms supplementary file 2

description: Supplementary files relating to simulations that vary key growth parameters and searches of the genomes of microbial isolates for the presence of repair genes.
DOI: 10.6084/m9.figshare.12515478
title: Example data for covirt kraken2

description: Example data for covirt kraken2
DOI: 10.6084/m9.figshare.12515526.v2
title: Damage repair versus aging in an individual-based model of biofilms supplementary file 2

description: Supplementary files relating to simulations that vary key growth parameters and searches of the genomes of microbial isolates for the presence of repair genes.
DOI: 10.6084/m9.figshare.12515478.v1
title: Example data for covirt kraken2

description: Example data for covirt kraken2
DOI: 10.6084/m9.figshare.12515526.v1
title: Damage repair versus aging in an individual-based model of biofilms supplementary file 2

description: Supplementary files relating to simulations that vary key growth parameters and searches of the genomes of microbial isolates for the presence of repair genes.
DOI: 10.6084/m9.figshare.12515474.v1
title: Context-dependent preferences in wild fruit bats

description: In models of animal choice, individuals are expected to evaluate options in absolute terms and assign some intrinsic, fitness-related utility value to different options. These expectations are consistent with those of economic rationality, producing decisions that are consistent across variable contexts. Evidence from humans and some other animals suggest that decision shortcuts might produce ‘irrational’ decisions that are influenced by the context of the choice. While there is widespread evidence that these mechanisms may influence animal decision-making, we can now explore how the presence and degree of these biases may arise in different animals based on their ecology. Here, we investigated context-dependent decision making in wild Jamaican fruit bats (<i>Artibeus jamaicensis</i>), specifically testing for shifts in preferences with the addition of an irrelevant decoy option. Fruit bats showed evidence for decision-making strategies that are sensitive to the context of the choice. We argue that studies aimed at exploring how an animal’s ecology might influence the presence and magnitude of these biases in decision-making of different animals are critical for understanding how animals make choices.
DOI: 10.6084/m9.figshare.12515474.v2
title: Aj decoy dataset

description: In models of animal choice, individuals are expected to evaluate options in absolute terms and assign some intrinsic, fitness-related utility value to different options. These expectations are consistent with those of economic rationality, producing decisions that are consistent across variable contexts. Evidence from humans and some other animals suggest that decision shortcuts might produce ‘irrational’ decisions that are influenced by the context of the choice. While there is widespread evidence that these mechanisms may influence animal decision-making, we can now explore how the presence and degree of these biases may arise in different animals based on their ecology. Here, we investigated context-dependent decision making in wild Jamaican fruit bats (<i>Artibeus jamaicensis</i>), specifically testing for shifts in preferences with the addition of an irrelevant decoy option. Fruit bats showed evidence for decision-making strategies that are sensitive to the context of the choice. We argue that studies aimed at exploring how an animal’s ecology might influence the presence and magnitude of these biases in decision-making of different animals are critical for understanding how animals make choices.
DOI: 10.6084/m9.figshare.12515474.v3
title: Aj decoy dataset and R code

description: In models of animal choice, individuals are expected to evaluate options in absolute terms and assign some intrinsic, fitness-related utility value to different options. These expectations are consistent with those of economic rationality, producing decisions that are consistent across variable contexts. Evidence from humans and some other animals suggest that decision shortcuts might produce ‘irrational’ decisions that are influenced by the context of the choice. While there is widespread evidence that these mechanisms may influence animal decision-making, we can now explore how the presence and degree of these biases may arise in different animals based on their ecology. Here, we investigated context-dependent decision making in wild Jamaican fruit bats (<i>Artibeus jamaicensis</i>), specifically testing for shifts in preferences with the addition of an irrelevant decoy option. Fruit bats showed evidence for decision-making strategies that are sensitive to the context of the choice. We argue that studies aimed at exploring how an animal’s ecology might influence the presence and magnitude of these biases in decision-making of different animals are critical for understanding how animals make choices.
DOI: 10.6084/m9.figshare.12515364
title: Rezzoagli_etal_2020_rawdata.xlsx

description: This item contains all the raw data of the paper by Rezzoagli et al. Combining antibiotics with antivirulence compounds can have synergistic effects and reverse selection for antibiotic resistance in <i>Pseudomonas aeruginosa. PLOS Biology</i><b></b>
DOI: 10.6084/m9.figshare.12515256
title: Metadata record for: COVID-19 outbreak response, a dataset to assess mobility changes in Italy following national lockdown

description: This dataset contains key characteristics about the data described in the Data Descriptor COVID-19 outbreak response, a dataset to assess mobility changes in Italy following national lockdown. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>
DOI: 10.6084/m9.figshare.12515298
title: Metadata record for: Long term survey of the fish community and associated benthic fauna of the Seine estuary nursery grounds

description: This dataset contains key characteristics about the data described in the Data Descriptor Long term survey of the fish community and associated benthic fauna of the Seine estuary nursery grounds. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12515256.v1
title: Metadata record for: COVID-19 outbreak response, a dataset to assess mobility changes in Italy following national lockdown

description: This dataset contains key characteristics about the data described in the Data Descriptor COVID-19 outbreak response, a dataset to assess mobility changes in Italy following national lockdown. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>
DOI: 10.6084/m9.figshare.12515298.v1
title: Metadata record for: Long term survey of the fish community and associated benthic fauna of the Seine estuary nursery grounds

description: This dataset contains key characteristics about the data described in the Data Descriptor Long term survey of the fish community and associated benthic fauna of the Seine estuary nursery grounds. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12515138
title: np-mediated-fusion-simulation-states.zip

description: Molecular dynamics simulation states for nanoparticle mediated fusion of membranes and vesicles.
DOI: 10.6084/m9.figshare.12515138.v1
title: np-mediated-fusion-simulation-states.zip

description: Molecular dynamics simulation states for nanoparticle mediated fusion of membranes and vesicles.
DOI: 10.6084/m9.figshare.12515135
title: np-mediated-fusion-tem-and-measurements.zip

description: TEM images and experimental data for nanoparticle-mediated fusion of lipid membranes.
DOI: 10.6084/m9.figshare.12515024
title: ListAdapt biocide tolerance GWAS - de novo assemblies of the 197 Listeria monocytogens strains

description: The genomes were <i>de novo</i> assembled and annotated through a harmonized in-house workflow called ARTwork (Assembly of reads and typing workflow) https://github.com/afelten-Anses/ARtWORK<br>
DOI: 10.6084/m9.figshare.12515024.v1
title: ListAdapt biocide tolerance GWAS - de novo assemblies of the 197 Listeria monocytogens strains

description: The genomes were <i>de novo</i> assembled and annotated through a harmonized in-house workflow called ARTwork (Assembly of reads and typing workflow) https://github.com/afelten-Anses/ARtWORK<br>
DOI: 10.6084/m9.figshare.12514973
title: 3D Models

description: 3D Model of the Torquigener Alkbomaculosus nest
DOI: 10.6084/m9.figshare.12515135.v1
title: np-mediated-fusion-tem-and-measurements.zip

description: TEM images and experimental data for nanoparticle-mediated fusion of lipid membranes.
DOI: 10.6084/m9.figshare.12514973.v1
title: 3D Models

description: 3D Model of the Torquigener Alkbomaculosus nest
DOI: 10.25375/uct.12514706
title: Major contribution of grass roots to soil carbon pools and CO2 fluxes in a mesic savanna (data)

description: There is a trend of increasing woody biomass in tropical savannas. Here we ask what effect this increase may have on soil carbon pools and fluxes.
DOI: 10.6084/m9.figshare.12514673
title: Face-specific visual distortions reveal a view- and orientation-independent face template_Data

description: Data (pictures and distortion reports) of patient A.D. for the paper Face-specific visual distortions reveal a view- and orientation-independent face template<b>.</b>
DOI: 10.25375/uct.12514706.v1
title: Major contribution of grass roots to soil carbon pools and CO2 fluxes in a mesic savanna (data)

description: There is a trend of increasing woody biomass in tropical savannas. Here we ask what effect this increase may have on soil carbon pools and fluxes.
DOI: 10.6084/m9.figshare.12514385
title: Relationship between the weather conditions and the physicochemical characteristics of cladodes and mucilage of two cactus pear species

description: This data was used to examine the effect of weather conditions on the physicochemical characteristics of cactus pear mucilage extracted from mature cladodes harvested over six months. We aimed to explain the correlation between the environmental temperatures and rainfall with the yield and viscosity of mucilage. In particular, the relationships between temperature, rainfall, cladode size, cladode moisture content, mucilage acid content and mucilage conductivity, and mucilage viscosity.We had four research questions 1. Does the size of cladodes influence the mucilage? 2. Does rainfall before harvest influence mucilage? 3. Do electrolytes influence mucilage? 4. Does the environmental temperature before harvest influence mucilage?<br>
DOI: 10.6084/m9.figshare.12514385.v1
title: Relationship between the weather conditions and the physicochemical characteristics of cladodes and mucilage of two cactus pear species

description: This data was used to examine the effect of weather conditions on the physicochemical characteristics of cactus pear mucilage extracted from mature cladodes harvested over six months. We aimed to explain the correlation between the environmental temperatures and rainfall with the yield and viscosity of mucilage. In particular, the relationships between temperature, rainfall, cladode size, cladode moisture content, mucilage acid content and mucilage conductivity, and mucilage viscosity.We had four research questions 1. Does the size of cladodes influence the mucilage? 2. Does rainfall before harvest influence mucilage? 3. Do electrolytes influence mucilage? 4. Does the environmental temperature before harvest influence mucilage?<br>
DOI: 10.6084/m9.figshare.12514187
title: Supplementary Material for: Use Motives of Patients with Amphetamine-Type Stimulants Use Disorder and Attention-Deficit/Hyperactivity Disorder

description: <b><i>Introduction:</i></b> There is a frequent comorbidity of amphetamine-type stimulants (ATS) use disorders and attention-deficit/hyperactivity disorder (ADHD). The assumption that this patient group “self-medicate” suggests that there are different use motives for ATS addicted patients with and without ADHD. <b><i>Objective:</i></b> Our study investigates these potential differences in use motives. <b><i>Methods:</i></b> Within a mixed-method approach, we examined the use motives of adults with ATS use disorder with and without ADHD in the first and latest month of their use. For this purpose, we used the 12-item Amphetamine-Type Stimulants Motive Questionnaire (AMQ) and a mind mapping technique after verifying that these tools are applicable to adults with ADHD. <b><i>Results:</i></b> The mixed-method approach showed that enhancement motives were the most important motives in the first month of use (e.g., fun/kick/rush/desire, and curiosity/interest in the drug/appeal), and over time, the incidence of coping motives increased (e.g., repression and freeing the mind/not having to think/switching off). There were no differences between adults with and without ADHD in the AMQ data, while the qualitative data showed that adults with ADHD used ATS less often out of social motives. In particular, the results showed no differences in the coping dimension and, thus, did not suggest that self-medication is an important factor for patients with ADHD. <b><i>Conclusions:</i></b> Patients with and without ADHD show very similar motive patterns for ATS use. This indicates that ATS treatment programs addressing use motives do not necessarily have to be different for patients with and without ADHD.