cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1353061.08fu
title: SH1353061.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1353062.08fu
title: SH1353062.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1353063.08fu
title: SH1353063.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2033296.08fu
title: SH2033296.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2033297.08fu
title: SH2033297.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.10896178
title: Data for UAV detection of river embankment piping

description: Data for a manuscript submitted to Water Resources Research.
DOI: 10.15468/dl.cdjbqb
title: Occurrence Download

description: A dataset containing 480 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neonauclea lanceolata (Blume) Merr."
 ]
}

 The dataset includes 480 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059508-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ck7esc
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monotes glandulosus Pierre"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059507-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gujgb
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mwasumbia alba Couvreur & D.M.Johnson"
 ]
}

 The dataset includes 44 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059509-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hupbn
title: Occurrence Download

description: A dataset containing 5606 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Macroinvertebrate abundance in river biotopes across England and Wales"
 ]
}

 The dataset includes 5606 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059510-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3cksxz
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nigella stricta Strid"
 ]
}

 The dataset includes 20 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059511-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5etb5u
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myristica mediovibex W.J.de Wilde"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059512-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghgcbj
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oedibasis apiculata (Kar. & Kir.) Koso-Pol."
 ]
}

 The dataset includes 116 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059513-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xdp5g
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monotes gossweileri De Wild."
 ]
}

 The dataset includes 28 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059514-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d3apds
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neonauclea longipedunculata Merr."
 ]
}

 The dataset includes 62 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059515-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fdnpp
title: Occurrence Download

description: A dataset containing 6361 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myagrum perfoliatum L."
 ]
}

 The dataset includes 6361 records from 301 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059516-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t94ymf
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nigella turcica Dönmez & Mutlu"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059517-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5fshhk
title: Occurrence Download

description: A dataset containing 442013 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lamium galeobdolon (L.) L."
 ]
}

 The dataset includes 442013 records from 1478 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059467-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emprzg
title: Occurrence Download

description: A dataset containing 11304 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Breutelia chrysocoma (Hedw.) Lindb."
 ]
}

 The dataset includes 11304 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021408-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.707067.v1
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707066.v1
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707081.v2
title: 56 indicators of impact

description: Brainstorm of possible indicators that our research is having an impact. Includes <em>prima facie</em> 'negative', as well as 'positive' indicators. All such indicators should be accompanied by a contextualizing narrative.
DOI: 10.6084/m9.figshare.707031
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707032
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707082.v3
title: Figure1_Individual differences in local and global perceptual organization

description: Figure to appear in: de-Wit, L. & Wagemans, J. (2013). Individual differences in local and global perceptual organization. In J. Wagemans (Ed.), Oxford Handbook of Perceptual Organization (in press). Oxford, U.K.: Oxford University Press. Figure legend: Figure 1. a) Embedded Figures Test: the stimulus on the left has to be identified in the embedded context to the right, b) Navon Letters: the local and global letters are illustrated in direct conflict, c) Ebbinghaus Illusion: the perceived size of the central dot is influenced by its context, d) Mooney Figure and Original: a novel 2 tone Mooney image is illustrated on the left based on the original to the right, e) Ponzo Illusion: the perceived size of the two dots is influenced by their context, f) Block Design: subjects have to replicate a simple pattern with 3D cubes, critical for the local global literature is the difference between the standard version on the left and the segmented version on the right, g) Collinear Contour: The co-alignment of a string of Gabors creates the impression of a closed shape (generated using GERT, REF, h) Proximity Dot Lattice: The slight difference in spacing between the dots creates the impression of a row of oriented lines.
DOI: 10.6084/m9.figshare.707031.v1
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707032.v1
title: Gaussian Job Archive for C4H6NO3S(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.707019
title: Image coding with H.264 I-frames

description: My master thesis "Image coding with H.264 I-frames"
DOI: 10.6084/m9.figshare.707018
title: A Brain Computer Interface for Communication Using Real-Time fMRI

description: The poster of our ICPR paper "A Brain Computer Interface for Communication Using Real-Time fMRI" Abstract We present the first step towards a brain computer interface (BCI) for communication using real-time functional magnetic resonance imaging (fMRI). The subject in the MR scanner sees a virtual keyboard and steers a cursor to select different letters that can be combined to create words. The cursor is moved to the left by activating the left hand, to the right by activating the right hand, down by activating the left toes and up by activating the right toes. To select a letter, the subject simply rests for a number of seconds. We can thus communicate with the subject in the scanner by for example showing questions that the subject can answer. Similar BCI for communication have been made with electroencephalography (EEG). In these implementations the subject for example focuses on a letter while different rows and columns of the virtual keyboard are flashing. The system then tries to detect if the correct letter is flashing or not. In our setup we instead classify the brain activity. Our system is not limited to a communication interface, but can be used for any interface where five degrees of freedom is necessary.
DOI: 10.6084/m9.figshare.707018.v1
title: A Brain Computer Interface for Communication Using Real-Time fMRI

description: The poster of our ICPR paper "A Brain Computer Interface for Communication Using Real-Time fMRI" Abstract We present the first step towards a brain computer interface (BCI) for communication using real-time functional magnetic resonance imaging (fMRI). The subject in the MR scanner sees a virtual keyboard and steers a cursor to select different letters that can be combined to create words. The cursor is moved to the left by activating the left hand, to the right by activating the right hand, down by activating the left toes and up by activating the right toes. To select a letter, the subject simply rests for a number of seconds. We can thus communicate with the subject in the scanner by for example showing questions that the subject can answer. Similar BCI for communication have been made with electroencephalography (EEG). In these implementations the subject for example focuses on a letter while different rows and columns of the virtual keyboard are flashing. The system then tries to detect if the correct letter is flashing or not. In our setup we instead classify the brain activity. Our system is not limited to a communication interface, but can be used for any interface where five degrees of freedom is necessary.
DOI: 10.6084/m9.figshare.707019.v1
title: Image coding with H.264 I-frames

description: My master thesis "Image coding with H.264 I-frames"
DOI: 10.6084/m9.figshare.707015
title: Using the Local Phase of the Magnitude of the Local Structure Tensor for Image Registration

description: The presentation of our SCIA paper "Using the Local Phase of the Magnitude of the Local Structure Tensor for Image Registration" Abstract The need of image registration is increasing, especially in the medical image domain. The simplest kind of image registration is to match two images that have similar intensity. More advanced cases include the problem of registering images of different intensity, for which phase based algorithms have proven to be superior. In some cases the phase based registration will fail as well, for instance when the images to be registered do not only differ in intensity but also in local phase. This is the case if a dark circle in the reference image is a bright circle in the source image. While rigid registration algorithms can use other parts of the image to calculate the global transformation, this problem is harder to solve for non-rigid registration. The solution that we propose in this work is to use the local phase of the magnitude of the local structure tensor, instead of the local phase of the image intensity. By doing this, we achieve invariance both to the image intensity and to the local phase and thereby only use the structural information, i.e. the shapes of the objects, for registration.
DOI: 10.6084/m9.figshare.707016
title: Does Parametric fMRI Analysis with SPM Yield Valid Results? - An Empirical Study of 1484 Rest Datasets

description: A presentation of our NeuroImage paper "Does Parametric fMRI Analysis with SPM Yield Valid Results? - An Empirical Study of 1484 Rest Datasets" Abstract The validity of parametric functional magnetic resonance imaging (fMRI) analysis has only been reported for simulated data. Recent advances in computer science and data sharing make it possible to analyze large amounts of real fMRI data. In this study, 1484 rest datasets have been analyzed in SPM8, to estimate true familywise error rates. For a familywise significance threshold of 5%, significant activity was found in 1%-70% of the 1484 rest datasets, depending on repetition time, paradigm and parameter settings. This means that parametric significance thresholds in SPM both can be conservative or very liberal. The main reason for the high familywise error rates seems to be that the global AR(1) auto correlation correction in SPM fails to model the spectra of the residuals, especially for short repetition times. The findings that are reported in this study cannot be generalized to parametric fMRI analysis in general, other software packages may give different results. By using the computational power of the graphics processing unit (GPU), the 1484 rest datasets were also analyzed with a random permutation test. Significant activity was then found in 1%-19% of the datasets. These findings speak to the need for a better model of temporal correlations in fMRI timeseries.
DOI: 10.6084/m9.figshare.707012
title: A GPU Accelerated Interactive Interface for Exploratory Functional Connectivity Analysis of fMRI Data

description: The poster for our ICIP paper "A GPU Accelerated Interactive Interface for Exploratory Functional Connectivity Analysis of fMRI Data" Abstract Functional connectivity analysis is a way to investigate how different parts of the brain are connected and interact. A common measure of connectivity is the temporal correlation between a reference voxel time series and all the other time series in a functional MRI data set. An fMRI data set generally contains more than 20,000 within-brain voxels, making a complete correlation analysis between all possible combinations of voxels heavy to compute, store, visualize and explore. In this paper, a GPU-accelerated interactive tool for investigating functional connectivity in fMRI data is presented. A reference voxel can be moved by the user and the correlations to all other voxels are calculated in real-time using the graphics processing unit (GPU). The resulting correlation map is updated in real-time and visualized as a 3D volume rendering together with a high resolution anatomical volume. This tool greatly facilitates the search for interesting connectivity patterns in the brain.
DOI: 10.6084/m9.figshare.707013
title: A Functional Connectivity Inspired Approach to Non-Local fMRI Analysis

description: The poster for our ICIP paper "A Functional Connectivity Inspired Approach to Non-Local fMRI Analysis"
DOI: 10.6084/m9.figshare.707011
title: Phase Based Volume Registration Using CUDA

description: The poster for our ICASSP paper "Phase Based Volume Registration Using CUDA"
DOI: 10.6084/m9.figshare.707013.v1
title: A Functional Connectivity Inspired Approach to Non-Local fMRI Analysis

description: The poster for our ICIP paper "A Functional Connectivity Inspired Approach to Non-Local fMRI Analysis"
DOI: 10.6084/m9.figshare.707011.v1
title: Phase Based Volume Registration Using CUDA

description: The poster for our ICASSP paper "Phase Based Volume Registration Using CUDA"
DOI: 10.6084/m9.figshare.707015.v1
title: Using the Local Phase of the Magnitude of the Local Structure Tensor for Image Registration

description: The presentation of our SCIA paper "Using the Local Phase of the Magnitude of the Local Structure Tensor for Image Registration"
DOI: 10.6084/m9.figshare.707007
title: Ignite! talk on Complexity in science

description: 5 minute talk styled after talks in the Ignite! series, created for the SciFund class (May, 2013).
DOI: 10.6084/m9.figshare.707010
title: Searchlight Goes GPU - Fast Multi-Voxel Pattern Analysis of fMRI Data

description: The poster for our ISMRM abstract "Searchlight Goes GPU - Fast Multi-Voxel Pattern Analysis of fMRI Data"