cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13879433
title: Dataset for "On the potential of the Cluster Ion Counter (CIC) to observe local new particle formation, condensation sink and growth rate of newly formed particles"

description: Data for Kulmala et al. (2024 )"On the potential of the Cluster Ion Counter (CIC) to observe local new particle formation, condensation sink and growth rate of newly formed particles" (https://doi.org/10.5194/ar-2024-14).

Included in the file are number concentrations of sub-2 nm ions and 2-2.3 nm ions measured with  Cluster Ion Counter (CIC) and Neutral cluster and  Air Ion Spectrometer (NAIS) at  SMEAR II station in Hyytiälä, Finland. Concentrations of 1-2 nm ions measured with the NAIS are also included. Sub-2 nm (2-2.3 nm) ion concentrations measured with CIC are refered as Channel 1 (Channel 2-Channel 3) in the .csv file.

Contact Santeri Tuovinen (santeri.tuovinen@helsinki.fi) for more details.
DOI: 10.5281/zenodo.3363345
title: IAMC 1.5°C Scenario Explorer and Data hosted by IIASA

description: <strong>Deprecation warning</strong> This is no longer the latest release of the IPCC Assessment Report. For the latest version please visit https://doi.org/10.5281/zenodo.5886911 and https://data.ece.iiasa.ac.at/ar6 for the AR6 Scenario Explorer where you can download the data set. As part of the IPCC's <em>Special Report on Global Warming of 1.5°C</em> (SR15), an assessment of quantitative, model-based climate change mitigation pathways was conducted. To support the assessment, the Integrated Assessment Modeling Consortium (IAMC) facilitated a coordinated and systematic community effort by inviting modelling teams to submit their available 1.5°C and related scenarios to a curated database. The compilation and assessment of the scenario ensemble was conducted by authors of the IPCC SR15, and the resource is hosted by the International Institute for Applied Systems Analysis (IIASA) as part of a cooperation agreement with Working Group III of the IPCC. The scenario ensemble contains more than 400 emissions pathways with underlying socio-economic development, energy system transformations and land use change until the end of the century, submitted by over a dozen research teams from around the world. The criteria for submission included that the scenario is presented in a peer-reviewed journal accepted for publication no later than May 15, 2018, or published in a report determined by the IPCC to be eligible grey literature by the same date. This release extends the original scenario ensemble with additional timeseries data on prices related to agiculture and food supply, which was used in the IPCC's <em>Special Report on Climate Change and Land</em> (SRCCL). The data is available for download at the <em>IAMC 1.5°C Scenario Explorer hosted by IIASA</em>. The license permits use of the scenario ensemble for scientific research and science communication, but restricts redistribution of substantial parts of the data. Please refer to the FAQ and legal code for more information.
description: {"references": ["Rogelj, Shindell, Jiang, et al. (2018). Mitigation pathways compatible with 1.5\u00b0C in the context of sustainable development. Special Report on the impacts of Global Warming of 1.5 \u00b0C. Geneva, Intergovernmental Panel on Climate Change.", "Smith, Nkem, Calvin, et al. (2019). Interlinkages between Desertification, Land Degradation, Food Security and GHG fluxes: synergies, trade-offs and Integrated Response Options. Special Report on Climate Change and Land. Geneva, Intergovernmental Panel on Climate Change."]}
DOI: 10.5281/zenodo.5602157
title: MetaFunc Databases: nr-go database

description: MetaFunc is a computational pipeline that can take input reads and pass it through a pipeline that will then analyse host genes from the reads on one side, and microbiome taxonomies and gene ontology annotations on the other, and finally allowing for microbe-host gene correlations. This dataset contains databases used for analysing the microbiome component of the pipeline. Full description of the pipeline can be found at https://metafunc.readthedocs.io/en/latest/#.
description: Funding: Maurice and Phyllis Paykel Trust Gut Cancer Foundation (NZ), with support from the Hugh Green Foundation Colorectal Surgical Society of Australia and New Zealand (CSSANZ) The Health Research Council of New Zealand
description: {"references": ["Menzel, P., Ng, K.L., Krogh, A., 2016. Fast and sensitive taxonomic classification for metagenomics with Kaiju. Nature Communications 7, 11257. https://doi.org/10.1038/ncomms11257", "Shen, W., Ren, H., TaxonKit: a practical and efficient NCBI Taxonomy toolkit, Journal of Genetics and Genomics, https://doi.org/10.1016/j.jgg.2021.03.006", "https://dx.doi.org/10.5281/zenodo.2529950; release date: 2020-01-01", "Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., Harris, M. A., Hill, D. P., Issel-Tarver, L., Kasarskis, A., Lewis, S., Matese, J. C., Richardson, J. E., Ringwald, M., Rubin, G. M., & Sherlock, G. (2000). Gene Ontology: Tool for the unification of biology. Nature Genetics, 25(1), 25\u201329. https://doi.org/10.1038/75556", "Huang, H., McGarvey, P.B., Suzek, B.E., Mazumder, R., Zhang, J., Chen, Y., Wu, C.H., 2011. A comprehensive protein-centric ID mapping service for molecular data integration. Bioinformatics 27, 1190\u20131191. https://doi.org/10.1093/bioinformatics/btr101", "The UniProt Consortium, 2017. UniProt: the universal protein knowledgebase. Nucleic Acids Research 45, D158\u2013D169. https://doi.org/10.1093/nar/gkw1099", "Camon, E., Magrane, M., Barrell, D., Lee, V., Dimmer, E., Maslen, J., Binns, D., Harte, N., Lopez, R., Apweiler, R., 2004. The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res 32, D262\u2013D266. https://doi.org/10.1093/nar/gkh021"]}
DOI: 10.6084/m9.figshare.26946514
title: Supplementary Material for: Usefulness of antigen carbohydrate 125 and N-terminal pro-b-type natriuretic peptide for assessing congestion in chronic heart failure: Insights from the CARDIOREN registry

description: Introduction and Objectives: A comprehensive assessment of congestion, including circulating biomarkers, is recommended in patients with acute heart failure. The circulating biomarkers natriuretic peptides (NPs) and carbohydrate antigen-125 (CA125) could be useful for congestion assessment in ambulatory chronic heart failure (CHF), but there is only limited information about their applicability in this context. Therefore, this study aimed to examine the association of plasma CA125 and NP levels with clinical and ultrasound congestion parameters in CHF.
Methods: This is a cross-sectional substudy of the Cardioren Spanish Registry, which enrolled 1107 patients with CHF from 13 tertiary hospitals in Spain between October 2021 and February 2022. Through ambulatory visits, we performed a comprehensive assessment of congestion-related parameters, including clinical variables (orthopnea, peripheral edema, and jugular engorgement, represented by the composite congestion score [CCS]), echocardiography variables (lung B-lines and inferior vena cava [IVC] diameter), and circulating biomarkers (CA125 and NPs). The association of the NP and CA125 levels with the clinical and echocardiographic congestion parameters was examined by multiple linear and logistic regression analyses. 
Results: This substudy included 802 patients for whom all the biomarker parameters were available (median age, 74 [IQR, 63–81] years; 65% male). The proportion of patients with left ventricular ejection fraction 50% and estimated glomerular filtration rate &lt;60 was 34% and 58%, respectively. The median CCS was 0 (interquartile range [IQR]: 0–1), with 45% of the sample exhibiting a median CCS of ≥1. The jugular engorgement, peripheral edema, and orthopnea rates were 32%, 21%, and 21%, respectively. A total of 35% of patients who underwent ultrasound examination showed lung B-lines, and the median IVC diameter was 16 mm. The median CA125 and NTproBNP levels were 14 U/mL (IQR: 9–28) and 1382 pg/mL (IQR: 563–3219), respectively. Multivariate analysis showed that higher CA125 levels were independently associated with higher odds of peripheral edema (p = 0.023) and lung B-lines (p &lt; 0.001). Further, NTproBNP was positively associated with jugular engorgement (p &lt; 0.001), orthopnea (p = 0.034), and enlarged IVC diameter (p = 0.031).
Conclusions: Clinical signs of congestion are frequent in CHF. In the ambulatory setting, NTproBNP was associated with parameters linked to intravascular congestion such as orthopnea, jugular engorgement, and IVC diameter, whereas CA125 was associated with extravascular volume overload parameters (peripheral edema and lung B-lines).
DOI: 10.6084/m9.figshare.26977300
title: Supplementary Material for: Treatment of neuropsychiatric symptoms in Alzheimer’s disease with a cannabis-based magistral formulation: An open-label prospective cohort study

description: Introduction: Neuropsychiatric symptoms (NPS) may be disruptive and problematic for patients with Alzheimer’s disease (AD) and for their caregivers. Cannabidiol (CBD) may be a safer alternative. The objective was to evaluate whether CBD-rich oil was effective, and safe in adults with NPS secondary to AD. Methods: An open-label, prospective cohort, single-center study in patients with AD onset after the age of 65 with untreated NPS. A CBD-rich oil was administrated 0.1 ml sublingually every 8-12 hours, up-titrated weekly. The primary outcome was to establish a reduction in the NPI-Q severity score of &gt;30% at 12 weeks compared with the baseline. A p-value of &lt;0.05 was statistically significant. Results: Between July 2020 and July 2023, 59 (93.5%) patients completed ≥3 months of follow-up. The patients were under treatment for a mean of 23.2 months, the median dose of CBD was 111 mg/day. The median NPI-Q severity and caregiver’s distress scores at baseline were 24 and 29, respectively. At 3 months, the median NPI-Q severity score shifted to 12 (p&lt;0.001) and 14 (p&lt;0.001), respectively. The proportion of patients who achieved a reduction in the NPI-Q severity score of &gt;30% was 94.9%, while a reduction of &gt;50% was achieved by 54.2%. The improvement was maintained for up to 24 months. Conclusion: This study shows that CBD-rich oil is an effective and safe therapy for treating NPS in AD patients, while also reducing the caregivers’ distress.
DOI: 10.15121/1495412
title: PoroTomo - Distributed Temperature Sensing (DTS) Measurements made in Brady Observation Well 56-1

description: This submission is a follow-up to Distributed Temperature Sensing (DTS) measurements made in Brady observation well 56-1 during the PoroTomo field experiment conducted in March, 2016. The measurements in this data set were made on August 24, 2018 over an approximately 20 hour period. The fiber-optic cable extends to the bottom of the well at 367 m below the wellhead. Measurements were made with a Silixa XT DTS interrogator configured to continuously record in each file a sixty-second average of stokes and anti-stokes readings on a single channel with a bottom hole U-bend. The 2016 data were collected using a Silixia Ultima with 12.5 cm spatial sampling, whereas the XT spatial sampling interval is 25 cm with a temperature resolution of 0.03 degrees C. Raw, uncalibrated data were converted to a single .MAT file using code provided by Oregon State University's CTEMPs https://ctemps.org/data-processing. The binary Matlab file containing processed Silixa XT data is read using the Matlab statement "load('Brady_25Aug2018_ch1.mat')", which contains the arrays below. Arrays with 2361 rows represent the channels and arrays with 1210 columns represent the one-minute samples.
DOI: 10.17188/1192273
title: Materials Data on AlCr2 by Materials Project

description: Cr2Al crystallizes in the tetragonal I4/mmm space group. The structure is three-dimensional. Cr is bonded in a 9-coordinate geometry to four equivalent Cr and five equivalent Al atoms. All Cr–Cr bond lengths are 2.38 Å. There are four shorter (2.63 Å) and one longer (2.73 Å) Cr–Al bond lengths. Al is bonded in a 8-coordinate geometry to ten equivalent Cr and four equivalent Al atoms. All Al–Al bond lengths are 2.96 Å.
DOI: 10.23645/epacomptox.6062623.v8
title: ToxCast Database (invitroDB)

description: ToxCast high-throughput assay information including assay annotation user guide, assay target information, study design information and quality statistics on the assays.
DOI: 10.24432/c57596
title: Lung Cancer
DOI: 10.25318/3410012701-eng
title: Canada Mortgage and Housing Corporation, vacancy rates, apartment structures of six units and over, privately initiated in census metropolitan areas

description: This table contains 37 series, with data starting from 1971 (not all combinations necessarily have data for all years). This table contains data described by the following dimensions (Not all combinations are available): Geography (37 items: Census metropolitan areas; Saguenay; Quebec; Calgary; Alberta; Edmonton; Alberta ...).
DOI: 10.3886/icpsr06576.v1
title: County Longitudinal Template, 1840-1990
title: Version 1

description: The County Longitudinal Template is a tool that enables researchers to allow for temporal changes in the geographic boundaries of counties in the United States. These data provide a decade-by-decade account of the administrative status of each county, starting in 1990 and tracing each census period back through 1840. The first four variables are the county name, ICPSR state code, FIPS code, and ICPSR county code. These four variables allow the researcher to select the counties for the state in question. The next 16 variables are ID variables for each census year, 1990 back to 1840. The last 13 variables are boundary change flags for each census year from 1960 to 1840.
description: Datasets: DS1: County Longitudinal Template, 1840-1990
description: All counties in the United States.
description: This collection is structured as list, or free field, data, with one case in each record. Each record has the same number of variables, but the actual record length of each line varies due to the differing width of certain variables. The maximum record length in the file is 114.
DOI: 10.5281/zenodo.10652098
title: Supporting simulation and observation files for "Influences of lidar scanning parameters on wind turbine wake retrievals in complex terrain"

description: This archive contains supporting files and data for Robey and Lundquist, "Influences of lidar scanning parameters on wind turbine wake retrievals in complex terrain.” Included are the namelist and turbine input for the WRF LES case, virtual scanning lidar sweep data, and the processed wake velocity deficit profiles and wake fits for both observational and virtual data. The reference waked and unwaked LES transects and wake deficits are also provided.

Processed observational data are saved by the date of the case study.
DOI: 10.5281/zenodo.10977532
title: Data files related to radio emission from streamer discharges

description: Radio emission from streamer dischargesThis dataset contains files related to the paper "Calculating radio emissions of positive streamer phenomena using 3D simulations" by Malla et al. The content is described below.

experimental_radio_emission & experimental_current_change

This dataset includes: 1) discharge images in .tif files, and 2) waveforms recorded by oscilloscope in .trc files. (C1: voltage, C2: current, C3: ICCD monitor, C4: antenna. Traces No.0 are waveforms without discharge.)

jefimenko_codeThis directory contains the code used to convert simulation output to radiated fields. After simulation output is stored, time derivatives are computed using `convert_silo_files.sh`. The `jefimenko.f90` code is then used to compute radiated electric fields. These two steps can be combined as in the script `convert_and_compute_emission.sh`.

computed_radiated_fieldsThis directory contains the radiated electric fields versus time as computed by the above procedure.

simulation_config_filesThis directory contains configuration files that can be used to reproduce the simulation results with the [afivo-streamer](https://github.com/MD-CWI/afivo-streamer) simulation code (commit 016d497, newer should also work).

simulation_log_filesThis directory contains the log files produced by the simulations, which contain information on e.g. the maximal electric field, the total amount of dissipated energy, the number of grid cells etc.
DOI: 10.5281/zenodo.11639887
title: Replication data for: HairSplitter: separating haplotypes with long reads

description: Replication data for the paper "HairSplitter: separating haplotypes with long reads".

Contains 1) Reads used to assemble when not available on public repositories, 2) The assemblies obtained using Flye or hifiasm, 3) The separated assemblies obtained by running the benchmarked software (HairSplitter, Strainberry, stRainy, HaploDMF, iGDA, Strainline) and 4) command lines used to launch the assemblies.
DOI: 10.5281/zenodo.13841378
title: Eosinophilia and Leucocytic DNA damage
DOI: 10.5281/zenodo.5126683
title: Results of interview analyses showing the code groundedness

description: This table presents the results of interview analyses, showing the number of mentions in each Critical Digital Literacies sub-dimension from each country. These focus group interviews were conducted with teachers from the four consortium schools of the DETECT project in Italy, Finland, Spain and the UK in order to gain a more in-depth understanding of the teachers' particular needs in relation to critical digital literacies. The interviews were organised and conducted by the researchers in the respective local HEIs between February-June 2020. A total of 7 focus-groups interviews took place with a total number of 39 participating teachers (7 from Finland, 6 from the UK, 9 from Spain and 17 from Italy). The interviews were conducted both face to face (schools in Spain) and online (schools in Finland, Italy and the UK) due to pandemic-related restrictions imposed shortly after the start of the data collection period. This dataset accompanies the intellectual outputs of the DETECT project, including amongst others this report: Gouseti, A., Bruni, I., Ilomäki, L., Lakkala, M., Mundy, D., Raffaghelli, J., Ranieri, M., Roffi, A., Romero, M. and Romeu, T. (2021) <em>Schools’ perceptions and experiences of critical digital literacies across four European countries - DETECT Report 2. </em>Accessed at: http://doi.org/10.5281/zenodo.5070394 <strong>Acknowledgement</strong> This project was funded by Erasmus+, KA2. Project Reference: 2019-1-UK01-KA201-061508.
DOI: 10.5281/zenodo.5144525
title: Codebook for the analysis of focus group interview data collected as part of the DETECT project.

description: This is the codebook created for the analysis of focus group interview data collected as part of the DETECT project. In particular, nine interviews were conducted with primary and secondary school teachers in Finland, Italy, Spain and the UK in order to explore their perceptions of critical digital literacies and how these are manifested in their practices. The interviews were organised and conducted by the researchers in the respective local HEIs between February-June 2020. A total of 7 focus-groups interviews took place with a total number of 39 participating teachers (7 from Finland, 6 from the UK, 9 from Spain and 17 from Italy). The interviews were conducted both face to face (schools in Spain) and online (schools in Finland, Italy and the UK) due to pandemic-related restrictions imposed shortly after the start of the data collection period. The collected data were read and segmented and all interview excerpts relating to the Critical Digital Literacies framework sub-dimensions were marked and chosen for the analysis. The total number of marked segments was 666 in all nine focus group interviews. To ensure the reliability of the analyses, the researchers translated and collected a representative sample of codings (n=117 out of 666) for each sub-dimensions from each school and these were examined by all researchers in several consensus meetings and the final criteria for each sub-category were constructed together based on those discussions. This dataset accompanies the intellectual outputs of the DETECT project, including amongst others this report: Gouseti, A., Bruni, I., Ilomäki, L., Lakkala, M., Mundy, D., Raffaghelli, J., Ranieri, M., Roffi, A., Romero, M. and Romeu, T. (2021) <em>Schools’ perceptions and experiences of critical digital literacies across four European countries - DETECT Report 2. </em>Accessed at: http://doi.org/10.5281/zenodo.5070394 <strong>Acknowledgement</strong> This project was funded by Erasmus+, KA2. Project Reference: 2019-1-UK01-KA201-061508.
DOI: 10.5281/zenodo.7550897
title: Shapefiles of administrative boundaries, Subway and main rivers in Glasgow, UK, around 1910

description: This collection consists of ESRI shapefiles for Glasgow around 1910: sanitary district boundaries in 1903 (Sanitary_Districts.shp, etc.) municipal ward boundaries in 1912 (Wards_1912.shp, etc.) registration district boundaries within the area of the City of Glasgow in 1913 (Registration_Districts.shp, etc.) routes of main rivers (River Clyde and River Kelvin) around 1915 (Rivers.shp, etc.) route of the Glasgow Subway around 1915 (Subway.shp, etc.) For details of shapefile construction, please see the descriptions in the following article: Angelopoulos, K., Stewart, G. and Mancy, R. <em>Local infectious disease experience influences vaccine refusal rates: a natural experiment. Proceedings of the Royal Society B: Biological Sciences. DOI: 10.1098/rspb.2022.1986.</em> Details of construction and references to original map sources are provided in the second paragraph of the section "Geographic conversion" in the online supplementary materials of the above reference. Further information about the boundaries is provided in the caption of Figure S1 of the supplementary materials. Additional contextual information is provided in both the main text and supplementary materials.
description: {"references": ["Angelopoulos, K., Stewart, G. and Mancy, R. Local infectious disease experience influences vaccine refusal rates: a natural experiment. Proceedings of the Royal Society B: Biological Sciences. DOI: 10.1098/rspb.2022.1986."]}
DOI: 10.5284/1000271
title: Troodos Archaeological and Environmental Survey Project

description: The Troodos Archaeological and Environmental Survey Project (TAESP) worked in the northern foothills of the Troodos Mountains in central Cyprus. It was directed by Dr Michael Given and Prof. A. Bernard Knapp (University of Glasgow), Dr Vasiliki Kassianidou (University of Cyprus) and Prof. Jay Noller (Oregon State University). In six seasons of fieldwork between 2000 and 2004 our team collected and analysed a substantial archaeological and geomorphological data set. This encompasses all periods from the Neolithic to the present day, a wide range of topographical and environmental contexts, and a broad spectrum of disciplinary and interdisciplinary expertise.
DOI: 10.14278/rodare.2995
title: Data and Code: Transforming martensite in NiTi within nanoseconds

description: This dataset belongs to the paper "Transforming martensite in NiTi within nanoseconds" and contains all raw data used for the paper. It includes raw data of reciprocal space maps taken at P23 Petra III DESY Synchrotron. It also contains the Python code used to analyze the raw data and the martensite intensities extracted from the raw data. Information about sample, measurement techniques and further data description can be found in README.txt.