cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60593/ur.d.28464347.v1
title: Figure 2 Dataset - The manufacturable flow insert is biocompatible with endothelial culture and reproduces physiological cytoskeletal remodeling with fluidic shear stress

description: The dataset includes raw images, endothelial cell viability data, and cell alignment data for the validation of a manufactured microfluidic component. The prism file includes the final figure outline as well as the raw tabulated data.This dataset supports Fluid flow impacts endothelial-monocyte interactions in a model of vascular inflammatory fibrosis, published in <i>Scientific Reports</i><i>,</i><i> </i>Vol. 15, Iss. 3227, January 2025.
DOI: 10.17876/musewide/dr.1/18255
title: Object GUO_ID 18255 in candels-cdfs-40

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.15468/dl.v4srgk
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Aves Argentinas / Asociación Ornitológica del Plata - Colección de registros observacionales de aves silvestres argentinas - Lista Narosky: familia Thinocoridae"
 ]
}

 The dataset includes 26 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011843-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60593/ur.d.28464353
title: Figure 3 Dataset - Effect of fluid flow on surface and junctional adhesion molecule expression with or without TNF-α stimulation

description: The dataset includes raw images of endothelial cells cultured at varying fluidic shear stress levels with or without inflammatory stimulation in a microfluidc tissue chip. The prism file includes the final figure outline as well as the raw ICAM-1 expression values and VE-cadherin junctional gap width values.This dataset supports Fluid flow impacts endothelial-monocyte interactions in a model of vascular inflammatory fibrosis, published in <i>Scientific Reports</i><i>,</i><i> </i>Vol. 15, Iss. 3227, January 2025.
DOI: 10.60593/ur.d.28464353.v1
title: Figure 3 Dataset - Effect of fluid flow on surface and junctional adhesion molecule expression with or without TNF-α stimulation

description: The dataset includes raw images of endothelial cells cultured at varying fluidic shear stress levels with or without inflammatory stimulation in a microfluidc tissue chip. The prism file includes the final figure outline as well as the raw ICAM-1 expression values and VE-cadherin junctional gap width values.This dataset supports Fluid flow impacts endothelial-monocyte interactions in a model of vascular inflammatory fibrosis, published in <i>Scientific Reports</i><i>,</i><i> </i>Vol. 15, Iss. 3227, January 2025.
DOI: 10.17876/musewide/dr.1/18261
title: Object GUO_ID 18261 in candels-cdfs-37

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.28464368
title: Figure 5 Dataset - Monocyte circulation facilitates increased transmigration and adhesion compared to static conditions

description: The dataset includes raw confocal images of live-labeled monocytes cultured with or without circulating flow and in the absence or presence of a chemoattractant protein in a microfluidic device. The prism file includes the final figure outline as well as the raw quantification expression values.The images can be analyzed in a software that enables 3D image analysis, such as Imaris. To quantify fluorescently labeled monocytes in confocal images, the Spots tool in Imaris was used to identify cells based on a specified diameter (10 um). Cells below the membrane were considered to be transmigrated. A fluorescent intensity threshold was determined and kept consistent across images for Spot identification. Quantified data was exported from Imaris and analyzed in GraphPad Prism.This dataset supports Fluid flow impacts endothelial-monocyte interactions in a model of vascular inflammatory fibrosis, published in <i>Scientific Reports</i><i>,</i><i> </i>Vol. 15, Iss. 3227, January 2025.
DOI: 10.60593/ur.d.28464368.v1
title: Figure 5 Dataset - Monocyte circulation facilitates increased transmigration and adhesion compared to static conditions

description: The dataset includes raw confocal images of live-labeled monocytes cultured with or without circulating flow and in the absence or presence of a chemoattractant protein in a microfluidic device. The prism file includes the final figure outline as well as the raw quantification expression values.The images can be analyzed in a software that enables 3D image analysis, such as Imaris. To quantify fluorescently labeled monocytes in confocal images, the Spots tool in Imaris was used to identify cells based on a specified diameter (10 um). Cells below the membrane were considered to be transmigrated. A fluorescent intensity threshold was determined and kept consistent across images for Spot identification. Quantified data was exported from Imaris and analyzed in GraphPad Prism.This dataset supports Fluid flow impacts endothelial-monocyte interactions in a model of vascular inflammatory fibrosis, published in <i>Scientific Reports</i><i>,</i><i> </i>Vol. 15, Iss. 3227, January 2025.
DOI: 10.17876/musewide/dr.1/18264
title: Object GUO_ID 18264 in candels-cdfs-32

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.28464383
title: Figure 6 Dataset - Monocyte transmigration and endothelial inflammatory response to key cytokines in the fibrotic secretome

description: The dataset includes raw fluorescent and phase images of endothelial monolayers cultured in microfluidic devices with circulating monocytes in the presence of different inflammatory factors relevant to tendon injury. The prism file includes the final figure outline as well as the raw quantification values for percent transmigration.This dataset supports Fluid flow impacts endothelial-monocyte interactions in a model of vascular inflammatory fibrosis, published in <i>Scientific Reports</i><i>,</i><i> </i>Vol. 15, Iss. 3227, January 2025.
DOI: 10.60593/ur.d.28464383.v1
title: Figure 6 Dataset - Monocyte transmigration and endothelial inflammatory response to key cytokines in the fibrotic secretome

description: The dataset includes raw fluorescent and phase images of endothelial monolayers cultured in microfluidic devices with circulating monocytes in the presence of different inflammatory factors relevant to tendon injury. The prism file includes the final figure outline as well as the raw quantification values for percent transmigration.This dataset supports Fluid flow impacts endothelial-monocyte interactions in a model of vascular inflammatory fibrosis, published in <i>Scientific Reports</i><i>,</i><i> </i>Vol. 15, Iss. 3227, January 2025.
DOI: 10.17876/musewide/dr.1/18265
title: Object GUO_ID 18265 in candels-cdfs-40

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.28464401
title: Figure 7 Dataset - Integration of vascular flow in the complete hToC culture

description: This figure describes the culture timeline for a tendon-on-a-chip model and details relevant cell types and the microfluidic device layout. The dataset includes raw confocal images of live-labeled cells within the tissue chip culture. The prism file includes the final figure layout as well as the raw quantification values for the number of adhered and transmigrated monocytes.The images can be analyzed in a software that enables 3D image analysis, such as Imaris. To quantify fluorescently labeled monocytes in confocal images, the Spots tool in Imaris was used to identify cells based on a specified diameter (10 um). Cells below the membrane were considered to be transmigrated. A fluorescent intensity threshold was determined and kept consistent across images for Spot identification. Quantified data was exported from Imaris and analyzed in GraphPad Prism.This dataset supports Fluid flow impacts endothelial-monocyte interactions in a model of vascular inflammatory fibrosis, published in <i>Scientific Reports</i><i>,</i><i> </i>Vol. 15, Iss. 3227, January 2025.
DOI: 10.60593/ur.d.28464401.v1
title: Figure 7 Dataset - Integration of vascular flow in the complete hToC culture

description: This figure describes the culture timeline for a tendon-on-a-chip model and details relevant cell types and the microfluidic device layout. The dataset includes raw confocal images of live-labeled cells within the tissue chip culture. The prism file includes the final figure layout as well as the raw quantification values for the number of adhered and transmigrated monocytes.The images can be analyzed in a software that enables 3D image analysis, such as Imaris. To quantify fluorescently labeled monocytes in confocal images, the Spots tool in Imaris was used to identify cells based on a specified diameter (10 um). Cells below the membrane were considered to be transmigrated. A fluorescent intensity threshold was determined and kept consistent across images for Spot identification. Quantified data was exported from Imaris and analyzed in GraphPad Prism.This dataset supports Fluid flow impacts endothelial-monocyte interactions in a model of vascular inflammatory fibrosis, published in <i>Scientific Reports</i><i>,</i><i> </i>Vol. 15, Iss. 3227, January 2025.
DOI: 10.17876/musewide/dr.1/18269
title: Object GUO_ID 18269 in candels-cdfs-37

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.28516490
title: Codebook and Dataset for the Flourishing in Emerging Adult Transition Study

description: This is the Codebook and Dataset for the Wave 1 Flourishing in Emerging Adult Transition Study (FEATS), created by Dr. Nestor Tulagan and his Flourishing, Achievement Motivation, and Identity (FAM&I) Lab at the Department of Psychology. FEATS is an educational and developmental psychology survey study examining ethnoracially minoritized students' science motivation, racial-ethnic identity, and gender identity beliefs. It also examines students' retrospective reports of their science support (academic discussions, homework help, and provision of materials), racial-ethnic socialization (cultural socialization and preparation for bias), and gender socialization (gender egalitarian messages and positive messages about LGBTQIA+ communities).To open the .sav file, you will need SPSS or a third party viewer like AddMaple.
DOI: 10.60593/ur.d.28516490.v1
title: Codebook and Dataset for the Flourishing in Emerging Adult Transition Study

description: This is the Codebook and Dataset for the Wave 1 Flourishing in Emerging Adult Transition Study (FEATS), created by Dr. Nestor Tulagan and his Flourishing, Achievement Motivation, and Identity (FAM&I) Lab at the Department of Psychology. FEATS is an educational and developmental psychology survey study examining ethnoracially minoritized students' science motivation, racial-ethnic identity, and gender identity beliefs. It also examines students' retrospective reports of their science support (academic discussions, homework help, and provision of materials), racial-ethnic socialization (cultural socialization and preparation for bias), and gender socialization (gender egalitarian messages and positive messages about LGBTQIA+ communities).To open the .sav file, you will need SPSS or a third party viewer like AddMaple.
DOI: 10.15468/dl.bfnpep
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Aves Argentinas / Asociación Ornitológica del Plata - Colección de registros observacionales de aves silvestres argentinas - Lista Narosky: familia Chionidae"
 ]
}

 The dataset includes 17 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011844-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17876/musewide/dr.1/18274
title: Object GUO_ID 18274 in candels-cdfs-32

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.28533629
title: Surveys and Data for Mosquito Net Use Study

description: The goal of the study was to identify social and environmental factors that could be impeding malaria control by diminishing effective net usage. In addition to outdoor sleeping, we considered the knowledge and perceptions of malaria and ITNs, and community health priorities.
DOI: 10.60593/ur.d.28533629.v1
title: Surveys and Data for Mosquito Net Use Study

description: The goal of the study was to identify social and environmental factors that could be impeding malaria control by diminishing effective net usage. In addition to outdoor sleeping, we considered the knowledge and perceptions of malaria and ITNs, and community health priorities.
DOI: 10.17876/musewide/dr.1/18275
title: Object GUO_ID 18275 in candels-cdfs-37

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.28660829
title: Retrospective Dry Needling data

description: Abstract:Background: Recovery from hamstring injuries in athletes can take months and may be complicated by recurrence. Traditional rehabilitation approaches may not fully alleviate hamstring pain and dysfunction. Dry needling, a minimally invasive therapy targeting myofascial trigger points, has shown promise in musculoskeletal injury and recovery, though its specific impact on hamstring injuries remains underexplored.<br>Hypothesis/Purpose: To determine the impact of dry needling on patient-reported outcomes and return to sport in athletes with hamstring injuries.<br>Study Design: Retrospective cohort study<br>Methods: Participants were patients who underwent dry needling for a hamstring injury in an academic outpatient sports medicine clinic between 2010 to 2023. Potential participants were identified through an electronic health record query for the term “dry needling”. Demographic details, diagnosis, management, and patient-reported outcomes were abstracted. Chi-square and t-tests were performed to assess for differences in clinical outcomes between groups.<br>Results: There were 49 patients in our cohort, with a mean age of 32.5 ± 16.95 years. More than half (51%) identified as women and 81% were white. Most of the cohort identified as a runner (59.2%). The most common chief complaint was unilateral leg pain (87.8%), and 30.6% of injuries were trauma-induced. The most common previously utilized treatment modalities included physical therapy (67.4%), thermal/cryotherapy (57.1%), and over-the-counter oral medication (51.0%). Baseline Visual Analog Scale (VAS) regardless of proximity to treatment was 2.88 ± 2.26. Average VAS after receiving the first dry needling therapy session was 2.40 ± 2.14. Based on patient self-report, dry needling benefited 69.4% and 59.2% resumed activities post-treatment.<br>Conclusions: Dry needling may improve symptoms and facilitate return to sport for athletes with hamstring injuries. Future prospective studies are warranted to validate these findings.
DOI: 10.60593/ur.d.28660829.v1
title: Retrospective Dry Needling data

description: Abstract:Background: Recovery from hamstring injuries in athletes can take months and may be complicated by recurrence. Traditional rehabilitation approaches may not fully alleviate hamstring pain and dysfunction. Dry needling, a minimally invasive therapy targeting myofascial trigger points, has shown promise in musculoskeletal injury and recovery, though its specific impact on hamstring injuries remains underexplored.<br>Hypothesis/Purpose: To determine the impact of dry needling on patient-reported outcomes and return to sport in athletes with hamstring injuries.<br>Study Design: Retrospective cohort study<br>Methods: Participants were patients who underwent dry needling for a hamstring injury in an academic outpatient sports medicine clinic between 2010 to 2023. Potential participants were identified through an electronic health record query for the term “dry needling”. Demographic details, diagnosis, management, and patient-reported outcomes were abstracted. Chi-square and t-tests were performed to assess for differences in clinical outcomes between groups.<br>Results: There were 49 patients in our cohort, with a mean age of 32.5 ± 16.95 years. More than half (51%) identified as women and 81% were white. Most of the cohort identified as a runner (59.2%). The most common chief complaint was unilateral leg pain (87.8%), and 30.6% of injuries were trauma-induced. The most common previously utilized treatment modalities included physical therapy (67.4%), thermal/cryotherapy (57.1%), and over-the-counter oral medication (51.0%). Baseline Visual Analog Scale (VAS) regardless of proximity to treatment was 2.88 ± 2.26. Average VAS after receiving the first dry needling therapy session was 2.40 ± 2.14. Based on patient self-report, dry needling benefited 69.4% and 59.2% resumed activities post-treatment.<br>Conclusions: Dry needling may improve symptoms and facilitate return to sport for athletes with hamstring injuries. Future prospective studies are warranted to validate these findings.
DOI: 10.17876/musewide/dr.1/18277
title: Object GUO_ID 18277 in candels-cdfs-40

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.28883534
title: Raw Data Files for Identifying novel radioprotective drugs via salivary gland tissue chip screening

description: Excel data files for all of the figures in the manuscript
DOI: 10.60593/ur.d.28883534.v1
title: Raw Data Files for <b>Identifying novel radioprotective drugs via salivary gland tissue chip screening</b>

description: Excel data files for all of the figures in the manuscript
DOI: 10.60593/ur.d.28883534.v2
title: Raw Data Files for Identifying novel radioprotective drugs via salivary gland tissue chip screening

description: Excel data files for all of the figures in the manuscript
DOI: 10.17876/musewide/dr.1/18280
title: Object GUO_ID 18280 in candels-cdfs-40

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.17876/musewide/dr.1/18283
title: Object GUO_ID 18283 in candels-cdfs-37

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.28886831
title: Dataset for vision and sway motion perception balance study

description: We measured head sway and perception of either visual motion or self-motion using virtual reality to determine whether perception influenced body sway.
DOI: 10.60593/ur.d.28886831.v1
title: Dataset for vision and sway motion perception balance study

description: We measured head sway and perception of either visual motion or self-motion using virtual reality to determine whether perception influenced body sway.
DOI: 10.17876/musewide/dr.1/18299
title: Object GUO_ID 18299 in candels-cdfs-40

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.17876/musewide/dr.1/18308
title: Object GUO_ID 18308 in candels-cdfs-40

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.29104241
title: Source Data for <i>Ki-67 promotes inflammatory signaling governing neutrophil recruitment during respiratory infections</i>

description: Original source files for graphs and flow cytometry plots in paper "<b>Ki-67 promotes inflammatory signaling governing neutrophil recruitment during respiratory infections</b>" published in EMBO Molecular Medicine (pending publication).
DOI: 10.60593/ur.d.29104241.v1
title: Source Data for <i>Ki-67 promotes inflammatory signaling governing neutrophil recruitment during respiratory infections</i>

description: Original source files for graphs and flow cytometry plots in paper "<b>Ki-67 promotes inflammatory signaling governing neutrophil recruitment during respiratory infections</b>" published in EMBO Molecular Medicine (pending publication).
DOI: 10.17876/musewide/dr.1/18310
title: Object GUO_ID 18310 in candels-cdfs-40

description: A spectrum of the MUSE-Wide survey DR1 photometric catalog.
DOI: 10.60593/ur.d.29161688
title: San Juan Basin flux data from "Bottom-up characterization of geologic methane emissions in the San Juan Basin in the southwestern USA"

description: Atmospheric methane is the second most important anthropogenic greenhouse gas and a key contributor to atmospheric chemistry and global warming. Significant uncertainties remain in the global methane budget, particularly regarding emissions from natural geologic sources. This study provides a detailed bottom-up characterization of natural geologic methane emissions from the San Juan Basin, a high-seepage hydrocarbon basin located in southern Colorado and northern New Mexico. The dataset includes methane, carbon dioxide and ethane flux measurements across the San Juan Basin. Seepage was measured using a dynamic closed-system flux chamber, first developed by Kazemi et al. (2021), connected to portable greenhouse gas analyzers (Los Gatos Research Ultraportable Greenhouse Gas Analyzer (“LGR”) or a Picarro G4302 Mobile Gas Concentration Analyzer (“Picarro”)). Fluxes were calculated using Equation 1 in Kazemi et al. (2021). The d[CH4]/dt is found by taking the average of slopes of 1-minute segments of the concentration stepping every 10 seconds. The uncertainty associated with d[CH4]/dt is the standard error of these slopes.<br>Our results show that natural geologic emissions are limited to the Fruitland coal outcrop and are associated with coal cleats, faults, and/or areas of hydrodynamic overpressure. Significant positive fluxes were observed on the Fruitland outcrop, particularly in the northwestern region.<br>The code used to produce these calculated fluxes is available at https://github.com/KatieHall1919/Flux-Calculation/tree/main. This work is associated with "Bottom-up characterization of geologic methane emissions in the San Juan Basin in the southwestern USA" by Margaret R. Scholer, Kathleen R. Hall, Thomas S. Weber, Marc L. Buursink, Mingzhe Zhu, Alexander C. Ihle, Devin Hencmann, Andrew M. Smith, Katey M. Walter Anthony, and Vasilii V. Petrenko<br>ReferencesKazemi, R., Schlageter, W., Hmiel, B., Weber, T.S., Murray, L.T., Petrenko, V.V., 2021. Investigating methane emissions from geologic microseepage in Western New York State, United States. Elem. Sci. Anthr. 9, 00066. https://doi.org/10.1525/elementa.2020.00066