cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3615644_d1
title: Additional file 1:Â  of A DNA vaccine encoding the viral hemorrhagic septicemia virus genotype IVb glycoprotein confers protection in muskellunge (Esox masquinongy), rainbow trout (Oncorhynchus mykiss), brown trout (Salmo trutta), and lake trout (Salvelinus namaycush)

description: Cumulative mortality data for vaccination trials of muskellunge and three salmonid species.á (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3615641_d6
title: Additional file 23: of The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution

description: Table of SNEP detection between RM and YJM strains.
DOI: 10.6084/m9.figshare.c.3615659_d4
title: Additional file 3: Figure S2. of The biodiversity hotspot as evolutionary hot-bed: spectacular radiation of Erica in the Cape Floristic Region

description: Relaxed clock molecular dating results: a) age estimates for clades within Erica inferred using RELTIME [24] with the best tree from RAxML (Additional file 2: Figure S1c); b) and c) phylogeny and relaxed clock molecular dating age estimates for clades within Erica inferred using BEAST [23] on a reduced matrix of 62 taxa b) with and c) without additional constraint based on microfossil evidence (error bars represent 95Â % Posterior Probability (PP) intervals; PP clade support is indicated at nodes). (ZIP 11562Â kb)
DOI: 10.6084/m9.figshare.c.3615659_d5
title: Additional file 1: Table S1. of The biodiversity hotspot as evolutionary hot-bed: spectacular radiation of Erica in the Cape Floristic Region

description: Accessions table including Genbank accession numbers. (XLSX 119Â kb)
DOI: 10.6084/m9.figshare.c.3615671_d2
title: Additional file 2: Table S4. of Improving microRNA target prediction with gene expression profiles

description: Gene Ontology enrichment results for miR-29 TargetExpress predictions using brain or heart expression profiles. (XLSX 346 kb)
DOI: 10.6084/m9.figshare.c.3615641_d8
title: Additional file 2: of The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution

description: List of samples generated and their sequencing depth.
DOI: 10.15468/dl.ts37g8
title: Occurrence Download

description: A dataset containing 1601 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Epanthidium tigrinum (Schrottky, 1905), Anthidium multifasciatum Strand, 1910, Hypanthidium tigrinum Schrottky, 1905)"
 ]
}

 The dataset includes 1601 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033707-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58kt3r
title: Occurrence Download

description: A dataset containing 3045 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes notoscriptus (Skuse, 1889)"
 ]
}

 The dataset includes 3045 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033708-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3615983_d7
title: Additional file 1 of Scope and limitations of yeast as a model organism for studying human tissue-specific pathways

description: Network alignments. Compressed (*.zip) file containing individual tissue-specific alignments. (ZIP 5181 Kb)
DOI: 10.6084/m9.figshare.c.3615983_d8
title: Additional file 5 of Scope and limitations of yeast as a model organism for studying human tissue-specific pathways

description: Alignment statistics. Alignment statistics for each tissue alignment. (TXT 10 Kb)
DOI: 10.6084/m9.figshare.c.3616010_d4
title: Additional file 8: Table S7. of Genome-wide analysis of DNA methylation and gene expression defines molecular characteristics of Crohn’s disease-associated fibrosis

description: Patient characteristics. The characteristics of the patients with Crohn’s disease and controls from whom colon specimens were obtained for the DNA methylome and RNA Seq analyses are shown. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3616010_d5
title: Additional file 1: Table S1. of Genome-wide analysis of DNA methylation and gene expression defines molecular characteristics of Crohn’s disease-associated fibrosis

description: Differentially methylated regions (DMRs) between normal and fibrotic HIF. Each row represents one DMR. For each DMR, a unique ID, coordinates in the form of chr, start, end (hg19), and the DMR width are provided. Each DMR is categorized by a pattern code: “01” represents hypermethylation in fibrotic samples, and “10” represents hypomethylation in fibrotic samples. The “ratio” column represents the magnitude of the difference in sequencing signal as a log2 fold change, “p.value” is the unadjusted p value, and “q.value” is the Benjamini-Hochberg adjusted p value. “Genomic_context” specifies if the DMR falls within a portion of an annotated gene model. Multiple overlaps are resolved using the priority: promoter &gt; exon &gt; intron &gt; 3′ end &gt; intergenic. Overlap with CpG shores, islands, and shelves is provided, along with the distance to the nearest gene and the names of the nearest genes. (XLS 461 kb)
DOI: 10.6084/m9.figshare.c.3615983_d9
title: Additional file 2 of Scope and limitations of yeast as a model organism for studying human tissue-specific pathways

description: HK genes. List of housekeeping genes and their classifications into conserved, human-specific, and unclassified subsets. (ZIP 12 Kb)
DOI: 10.6084/m9.figshare.c.3616139_d3
title: Additional file 2: of 
                     Owenia fusiformis â   a basally branching annelid suitable for studying ancestral features of annelid neural development

description: Confocal z-stack showing 5-HT-LIR (purple), aTub-LIR (cyan) and DAPI staining (dark blue) of the 7 dpf stage. Apical view. Note that the staining of peripheral nerves is scarce. Available at: http://dx.doi.org/10.5061/dryad.m8k24/2 .
DOI: 10.15468/dl.t394w9
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes albopictus (Skuse, 1894)",
 "Country is Argentina",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033709-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616265_d6
title: Additional file 4: Table S1. of Characterization of the murine macrophage response to infection with virulent and avirulent Burkholderia species

description: Hierarchical clustering of the inflammation related gene expression data. This is the underlying data for Fig. 6. The raw Ct data for 84 inflammation-related genes in Burkholderia-infected RAW264.7 macrophages were corrected for housekeeping genes to yield a ΔCt dataset. This data was further corrected by subtracting the average values for the untreated controls for the 4 and 8 h time points (ΔΔCt). ΔΔCt values were z-score (absolute deviation) normalized within each strain. Explanation of the column headings: column B to column AQ represents the name of the Burkholderia strain and the time point at which the expression of genes were assayed. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3616298_d1
title: Additional file 1: of Colonization potential to reconstitute a microbe community in patients detected early after fecal microbe transplant for recurrent C. difficile

description: Characteristics of donors and patients. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3616313_d4
title: Additional file 4: of Global DNA methylation profiling reveals new insights into epigenetically deregulated protein coding and long noncoding RNAs in CLL

description: Additonal data 3. (XLS 29.5 kb)
DOI: 10.6084/m9.figshare.c.3616313_d5
title: Additional file 7: of Global DNA methylation profiling reveals new insights into epigenetically deregulated protein coding and long noncoding RNAs in CLL

description: Additonal data 6. (XLS 231 kb)
DOI: 10.6084/m9.figshare.c.3616334_d2
title: MOESM4 of Proteome analysis of excretory-secretory proteins of Entamoeba histolytica HM1:IMSS via LC–ESI–MS/MS and LC–MALDI–TOF/TOF

description: Additional file 4. De novo peptides from ESI.
DOI: 10.15468/dl.xrkq4s
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes ochraceus (Theobald, 1901)"
 ]
}

 The dataset includes 86 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033710-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616367_d10
title: MOESM1 of Infiltration-RNAseq: transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants

description: Additional file 1: Table S1. Â List of significanly differentially expressed Medicago truncatula genes between Control and LAP1 replicate sets (P-value &lt;0.05).
DOI: 10.6084/m9.figshare.c.3616415_d2
title: Additional file 2: of Path2enet: generation of human pathway-derived networks in an expression specific context

description: R vignette provided as a guided tutorial to facilitate the installation and use of the Path2enet package. (HTML 9198 kb)
DOI: 10.15468/dl.44bp59
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-131.6064 59.66522,-126.30624 59.58284,-127.34979 61.88964,-134.51736 67.7665,-140.916 69.1396,-141.16315 59.85746,-131.6064 59.66522))",
 "OccurrenceStatus is Present",
 "TaxonKey is Limnephilus argenteus Banks, 1914"
 ]
}

 The dataset includes 55 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033711-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616514_d1
title: Additional file 8: of Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction

description: Results of proteome analysis. Potato leaves from cv. Désirée (NT) and NahG-Désirée (NahG) were either virus-inoculated (PVY) or mock-inoculated (mock) and lamina was collected at 4 dpi. Leaves from two potato plants were sampled and pooled together to produce three biological replicates per treatment. LC-MS analysis was made in order to quantify protein abundance in the samples 339 identified peptides are shown in the table together with their IDs, descriptions and spectral counts for each sample (sheet’spectral count’). Results of analysis of variance (ANOVA) are shown in (sheet’ANOVA’). g: p-value between genotypes, s: p-value for interaction between treatment (PVY /mock) g*s: p-value for genotype/treatment interaction. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.c.3616514_d3
title: Additional file 6: of Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction

description: Gas exchange and fluorescence measurement. Photosynthetic parameters have been measured for both genotypes (NT-Désirée and NahG-Désirée) as described in methods section. Potato leaves were either mock- or virus-treated and analyzed at 0, 0.13, 1, 3, 4, 5, 7, 8 and 11 dpi for each of the measured leaves. Obtained results for following parameters are listed in the table: Pn- net photosynthetic rate, SPAD-chlorophyll content, Fv’/Fm’- actual photochemical efficiency, Fv/Fm- potential photochemical activity, ETR- electron transport rate, Cond- Stomatal Conductivity, Transp- transpiration. Leaf number: three bottom leaves have been inoculated and numbered from 1 to 3 (1-the bottom most inoculated leave, 3-the upper most inoculated leave) (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3616556_d1
title: Additional file 6: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

description: miR166 family and the targets in dwarf mutant (A1) and tall-mutant (A3). (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3616556_d2
title: Additional file 7: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

description: Predicted targets of miRNAs different expressed between tall-mutant (A3) and wild-type (A9). (XLSX 82 kb)
DOI: 10.6084/m9.figshare.c.3616556_d3
title: Additional file 11: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

description: The miRNA/target interactions validated by PAREsnip program. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3616562_d1
title: Additional file 1: Table S1. of Genome analysis of Daldinia eschscholtzii strains UM 1400 and UM 1020, wood-decaying fungi isolated from human hosts

description: Families of transposable elementsÂ identified in the genomes of Daldinia eschscholtzii UM 1400 and UM 1020â  . Table S2. Information of the genome sequences used in phylogenomic and gene family analyses. Table S3. List of gene families and the distribution of the genes in each family among 11 Sordariomycetes fungi. Table S4. Gene families shared by both Daldinia eschscholtzii UM 1400 and UM 1020. Table S5. Number of CAZymes involved in plant polysaccharide degradation of 14 fungal genomes based on CAZyme databaseÂ (used in Table 2). Table S6. List of predicted secondary metabolite backbone genes. Table S7. List of predicted genes encoding metallopeptidases (families M35 and M36) and subtilisin-like peptidases (subfamily S08A). Table S8. List of predicted genes encoding mitogen-activated protein kinase (MAPK) signaling components . Table S9. List of predicted genes encoding stress response proteins involved in adaptive responses to osmotic stress, pH stress, thermal stress, iron ion availability, nutrient stress, oxidative stress, and nitrosative stress for adaptation in harsh environment. (XLSX 1091 kb)
DOI: 10.6084/m9.figshare.c.3616613_d2
title: Additional file 7: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

description: Full Results of SOAP-based Differential Expression Analysis of Normalized Sequence Reads Corresponding to Known Bovine miRNAs (Animal/Replicate 1â  4). (XLSX 60 kb)
DOI: 10.15468/dl.8v2eka
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes opok Corbet & Cunningham van Someren, 1962"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033712-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616775_d4
title: Additional file 1: Table S1. of Transcriptome profiling of Kentucky bluegrass (Poa pratensis L.) accessions in response to salt stress

description: Normalized expression values for differentially expressed transcripts detected among 24 Kentucky bluegrass root tissue samples. (XLSX 1085Â kb)
DOI: 10.15468/dl.fqna85
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes albopictus (Skuse, 1894)",
 "Country is Costa Rica",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033713-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616820_d7
title: Additional file 6: Table S2. of Determining the origin of synchronous multifocal bladder cancer by exome sequencing

description: Potential driver mutations in samples identified from COSMIC or ATLAS databases and literature. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3616877_d2
title: Additional file 2: Table S2. of A census of Îą-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea

description: Conserved TM POGs. Descriptive data for each conserved TM POG, such as viral specificity and number of TM segments. (XLSX 1213Â kb)
DOI: 10.6084/m9.figshare.c.3616943_d4
title: MOESM6 of 50Â years of amino acid hydrophobicity scales: revisiting the capacity for peptide classification

description: Additional file 6: Table S5. Pool specific amino acid pattern of length 5. Given is the sequence pool 1 (column 1) and sequence pool 2 (column 2), the separation capacity between pools based on hydrophobicity (column 3), the maximal difference in the frequency of occurrence (FO) pattern value (column 4), the minimal difference in the FO pattern value (column 5), the number of overrepresented pattern from pool1 in contrast to pool2 (column 6) and the top 5 of identified pattern of length 5.
DOI: 10.15468/dl.bzuu9r
title: Occurrence Download

description: A dataset containing 1715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Antarctica, Asia, Oceania, Europe, North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coryphaena hippurus Linnaeus, 1758"
 ]
}

 The dataset includes 1715 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033714-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wr39t8
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Parashorea stellata Kurz"
 ]
}

 The dataset includes 63 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033715-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616943_d5
title: MOESM11 of 50Â years of amino acid hydrophobicity scales: revisiting the capacity for peptide classification

description: Additional file 9: Table S6. Distance of amino acids hydrophobicity values to evolved random scale. Given is the scale identifier (column 1) and scale separation capacity (column 2). Furthermore, for each amino acid (columns 3 to 22) the distance of the normalized hydrophobicity value to the evolved hydrophobicity scale value is shown.
DOI: 10.15468/dl.8b9syr
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes palpalis (Newstead, 1907)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033716-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616943_d8
title: MOESM9 of 50Â years of amino acid hydrophobicity scales: revisiting the capacity for peptide classification

description: Additional file 11: Table S7. Influence of convex envelope on volume and number of peptides. Represented is the reduction of volume and number of peptides per structure pool (column 1; number of all peptides within the pool, column 2) in percentage for all scenarios with nÂ =Â 5 dimensions in average (columns 3, 4), in minimum (columns 5, 6) and in maximum (columns 7, 8).
DOI: 10.6084/m9.figshare.c.3616985_d2
title: Additional file 1: of Factors influencing adultsâ   immunization practices: a pilot survey study of a diverse, urban community in central Ohio

description: "Dataset". (XLSX 97 kb)
DOI: 10.6084/m9.figshare.c.3616994_d2
title: Additional file 3: of Uncovering periodic patterns of space use in animal tracking data with periodograms, including a new algorithm for the Lomb-Scargle periodogram and improved randomization tests

description: R code for a statistical test of periodicity in animal tracking data. (R 1 kb)
DOI: 10.6084/m9.figshare.c.3617075_d2
title: Additional file 9: Table S2. of A genetic framework for H2O2 induced cell death in Arabidopsis thaliana

description: A list of the genes used in the cat2 gene expression cluster analysis. (XLSX 15 kb)
DOI: 10.15468/dl.42arp4
title: Occurrence Download

description: A dataset containing 1147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes albopictus (Skuse, 1894)",
 "Country is Mexico",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 1147 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033717-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3617093_d2
title: Additional file 1: Table S1. of Spatial pattern of genetic diversity and selection in the MHC class II DRB of three Neotropical bat species

description: Supplementary methods, including the characteristics of all capture sites (Table S1)ďťż, the list of samples successfully amplified for the MHC class II DRB loci (Table S2), the distribution of DRB alleles per species (Table S3-5), the pairwise differentiation computations per species (Table S6-8), as well as the correlations of genetics and geographic distance (Table S9). (XLS 179 kb)
DOI: 10.6084/m9.figshare.c.3617147_d1
title: Additional file 3: of The use of digital PCR to improve the application of quantitative molecular diagnostic methods for tuberculosis

description: The dMIQE checklist for this study. (XLSX 18 kb)
DOI: 10.15468/dl.h9k6s3
title: Occurrence Download

description: A dataset containing 191639 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Liberia"
 ]
}

 The dataset includes 191639 records from 533 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033694-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3617219_d2
title: Additional file 2: of Baseline characteristics and hospitalizations in patients with schizophrenia receiving olanzapine long-acting injection: an interim analysis from a non-interventional, prospective observational safety study

description: A list of participating centers and names of ethics boards. (XLS 144 kb)
DOI: 10.6084/m9.figshare.c.3617246_d1
title: Additional file 4: Table S4 of Updated Rice Kinase Database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes

description: Rice kinases differentially expressed under root heavy metal treatment. (XLSX 62 kb)