cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5sb3fh
title: Occurrence Download

description: A dataset containing 70767 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Material sample"
 ]
 },
 "Geometry POLYGON((-70 -35,-52 -35,-52 -10,-70 -10,-70 -35))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 70767 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0141421-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oqssvn
title: Occurrence Download

description: A dataset containing 641 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "EstablishmentMeans is INTRODUCED",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Country mismatch",
 "Issue is Country derived from coordinates",
 "Issue is Recorded date mismatch",
 "Issue is Recorded date invalid",
 "Issue is Elevation non numeric"
 ]
 },
 "Geometry POLYGON((23.59863 18.85254,66.31348 18.85254,66.31348 50.84473,23.59863 50.84473,23.59863 18.85254))",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 641 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024544-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tpfhhe
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cnaphalocrocis bilinealis (Hampson, 1891)",
 "Year 1970-2024"
 ]
}

 The dataset includes 49 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065625-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7c2rw
title: Occurrence Download

description: A dataset containing 13967 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "TaxonKey is Araneae"
 ]
}

 The dataset includes 13967 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109982-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d39p5u
title: Occurrence Download

description: A dataset containing 1038 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Scinax acuminatus (Cope, 1862))"
 ]
}

 The dataset includes 1038 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065629-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k1vbgg
title: Occurrence Download

description: A dataset containing 803 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apteryx owenii Gould, 1847"
 ]
}

 The dataset includes 803 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008679-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4a53c
title: Occurrence Download

description: A dataset containing 7719 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Grallaria guatimalensis Prevost & Des Murs, 1842"
 ]
}

 The dataset includes 7719 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118186-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ey3tse
title: Occurrence Download

description: A dataset containing 194278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Bromeliaceae"
 ]
}

 The dataset includes 194278 records from 490 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008675-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.taj9ca
title: Occurrence Download

description: A dataset containing 435 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hestina persimilis (Westwood)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 435 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065623-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5swhgr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eugenes fulgens (Swainson, 1827)",
 "Year 1980-2020"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091141-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4sor3n
title: Occurrence Download

description: A dataset containing 65986 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mustela erminea Linnaeus, 1758"
 ]
}

 The dataset includes 65986 records from 294 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006324-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvkpx9
title: Occurrence Download

description: A dataset containing 286409 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 {
 "or" : [
 "DatasetKey is one of (NABU|naturgucker, Flora von Deutschland (Phanerogamen), VegetWeb - Repositorium von Vegetationsaufnahmen, Insekten Sachsen, iNaturalist Research-grade Observations, Harmonised freshwater fish occurrence and abundance data for 12 federal states in Germany, Observation.org, Nature data from around the World, EOD – eBird Observation Dataset, The Spider Collection at the Staatliches Museum für Naturkunde Karlsruhe, Neuropteren Deutschlands (Neuropterida of Germany), ArtenFinder, Occurrence Data of Vascular Plants collected or compiled for the Flora of Bavaria, Floristic records from survey studies of the Bayerisches Landesamt für Umwelt, Historical Vertebrate Distributions in Bavaria 1845, Biodiversity data of gravel pit lakes in Northern Germany)",
 "PublishingOrg is one of (57254bd0-8256-11d8-b7ed-b8a03c50a862, 0674aea0-a7e1-11d8-9534-b8a03c50a862, 10980920-6dad-11da-ad13-b8a03c50a862, 99ea0c90-61e5-11dc-a64c-b8a03c50a862, 463555b0-d081-11da-ae8f-b8a03c50a862, 6e1cad80-bdf5-11d8-84ea-b8a03c50a862, c76cf030-2a95-11da-9cc1-b8a03c50a862, 48490260-8fc0-11dd-be72-b8a03c50a862, 98dbab03-09e5-4ceb-988e-04f3e803decb)",
 "NetworkKey is one of (d1627240-04ab-4162-aee9-b16df6bc8308, 3aee7756-565e-4dc5-b22c-f997fbd7105c)"
 ]
 },
 "Country is Germany",
 {
 "not" : {
 "HasGeospatialIssue" : [
 "is true"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Passer domesticus (Linnaeus, 1758))"
 ]
}

 The dataset includes 286409 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006886-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzvww5
title: Occurrence Download

description: A dataset containing 112429 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vipera berus (Linnaeus, 1758)"
 ]
}

 The dataset includes 112429 records from 516 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006888-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxke6r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saponaria glutinosa M.Bieb.",
 "Geometry POLYGON((-4.57907617500001 39.884719509, -4.57907617500001 41.165844755, -3.05298331400002 41.165844755, -3.05298331400002 39.884719509, -4.57907617500001 39.884719509))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006900-250227182430271/datasets/export for details.
DOI: 10.5281/zenodo.14980180
title: sphaeramia_orbicularis_spades_01.fasta.gz
DOI: 10.5281/zenodo.14980181
title: sphaeramia_orbicularis_spades_01.fasta.gz
DOI: 10.5517/ccdc.csd.cc2lqcf4
title: CCDC 2404776: Experimental Crystal Structure Determination

description: Related Article: Wang Shu-Yi|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqlc9
title: CCDC 2404991: Experimental Crystal Structure Determination

description: Related Article: Subhadip Neogi|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqq24
title: CCDC 2405106: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqlwt
title: CCDC 2405007: Experimental Crystal Structure Determination

description: Related Article: Wang Shu-Yi|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqnpp
title: CCDC 2405063: Experimental Crystal Structure Determination

description: Related Article: Wang Shu-Yi|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/10940579
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.5517/ccdc.csd.cc2lqnqq
title: CCDC 2405064: Experimental Crystal Structure Determination

description: Related Article: Wang Shu-Yi|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqnrr
title: CCDC 2405065: Experimental Crystal Structure Determination

description: Related Article: Wang Shu-Yi|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqsw0
title: CCDC 2405193: Experimental Crystal Structure Determination

description: Related Article: Gellert Sipos, Alexandre N. Sobolev, Reto Dorta|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.bd7c5p
title: Occurrence Download

description: A dataset listing the 26746 species recorded in GBIF matching the query:
{
 "Country" : [
 "is Slovenia"
 ]
}

 The dataset's 26746 records were derived from 733 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006889-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28547222
title: PRE_Questionario_Sostenibilita.xlsx

description: <b>Enhancing Environmental awareness in primary education: the impact of interactive and gamified learning on sustainability and pro-environmental behaviours</b>
DOI: 10.6084/m9.figshare.28547222.v1
title: PRE_Questionario_Sostenibilita.xlsx

description: <b>Enhancing Environmental awareness in primary education: the impact of interactive and gamified learning on sustainability and pro-environmental behaviours</b>
DOI: 10.15468/dl.2j6kas
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ethiopia",
 "TaxonKey is Podocarpus gracilior Pilg."
 ]
}

 The dataset includes 48 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006892-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14979916
title: BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph

description: BOCK is a knowledge graph integrating oligogenic disease information (originally from the Oligogenic Disease Database (Natchtegael et al. 2022)) together with multiple biological networks and ontologies.

Compared to more generic knowledge graphs, we selected specifically networks relevant to understand the molecular mechanisms of epistasis, placing genes as the central entities, and focused on trusted resources describing a large set of human genes and their interactions.

All entities in the KG are linked to their source database entry via an URI (Uniform Resource Identifier) to facilitate integrations within larger bioinformatics linked data repositories.

BOCK 2.0 integrates recent versions of the used ontologies and databases, as well as additional pathway-specific (The Reactome Pathway Knowledgebase 2024, Milacic et al.) and tissue-specific information (COXPRESdb v8, Obayashi et al.). Additionally the database used for the coexpression relation between genes, has been replaced by COXPRESdb v8.

We provide BOCK 2.0 in three formats:



GraphML (Graph Markup Language): a network format enabling the fast import of the KG by multiple libraries (e.g networkx) and tools (e.g Cytoscape).

XML (Extensible Markup Language): a text-encoding system that is human-readable and compatible with many systems.

Neo4J import files: tab-separated files that can be easily imported into Neo4J using the neo4j-admin utils.


 
description: This work was supported by the European Regional Development Fund (ERDF) and the Brussels-Capital Region-Innoviris within the framework of the Operational Programme 2014-2020 through the ERDF-2020 project ICITY-RDI.BRU [27.002.53.01.4524], an F.N.R.S-F.R.S CDR [35276964], an Innoviris Joint R\&D project Genome4Brussels [2020 RDIR 55b], a Research Foundation-Flanders (F.W.O.) Infrastructure project associated with ELIXIR Belgium [I002819N], the Imagica2 IRP project by the Vrije Universiteit Brussel [IRP8b] and by TAILOR, a project funded by the EU Horizon 2020 research and innovation program [952215]. The authors also thank Foundation 101 Genomes (f101g.org) for fruitful collaboration, creative exchange and scientific support. This work was supported by the Fonds de la Recherche Scientifique (F.R.S-F.N.R.S) with the Fund for Research Training in Industry and Agriculture [40021542].
DOI: 10.5281/zenodo.7185679
title: BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph

description: BOCK is a knowledge graph integrating oligogenic disease information (originally from the Oligogenic Disease Database (Natchtegael et al. 2022)) together with multiple biological networks and ontologies.

Compared to more generic knowledge graphs, we selected specifically networks relevant to understand the molecular mechanisms of epistasis, placing genes as the central entities, and focused on trusted resources describing a large set of human genes and their interactions.

All entities in the KG are linked to their source database entry via an URI (Uniform Resource Identifier) to facilitate integrations within larger bioinformatics linked data repositories.

BOCK 2.0 integrates recent versions of the used ontologies and databases, as well as additional pathway-specific (The Reactome Pathway Knowledgebase 2024, Milacic et al.) and tissue-specific information (COXPRESdb v8, Obayashi et al.). Additionally the database used for the coexpression relation between genes, has been replaced by COXPRESdb v8.

We provide BOCK 2.0 in three formats:



GraphML (Graph Markup Language): a network format enabling the fast import of the KG by multiple libraries (e.g networkx) and tools (e.g Cytoscape).

XML (Extensible Markup Language): a text-encoding system that is human-readable and compatible with many systems.

Neo4J import files: tab-separated files that can be easily imported into Neo4J using the neo4j-admin utils.


 
description: This work was supported by the European Regional Development Fund (ERDF) and the Brussels-Capital Region-Innoviris within the framework of the Operational Programme 2014-2020 through the ERDF-2020 project ICITY-RDI.BRU [27.002.53.01.4524], an F.N.R.S-F.R.S CDR [35276964], an Innoviris Joint R\&D project Genome4Brussels [2020 RDIR 55b], a Research Foundation-Flanders (F.W.O.) Infrastructure project associated with ELIXIR Belgium [I002819N], the Imagica2 IRP project by the Vrije Universiteit Brussel [IRP8b] and by TAILOR, a project funded by the EU Horizon 2020 research and innovation program [952215]. The authors also thank Foundation 101 Genomes (f101g.org) for fruitful collaboration, creative exchange and scientific support. This work was supported by the Fonds de la Recherche Scientifique (F.R.S-F.N.R.S) with the Fund for Research Training in Industry and Agriculture [40021542].
DOI: 10.5281/zenodo.7185680
title: BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph

description: BOCK is a new knowledge graph integrating oligogenic disease information (originally from the Oligogenic Disease Database (Natchtegael et al. 2022)) together with multiple biological networks and ontologies. Compared to more generic knowledge graphs, we selected specifically networks relevant to understand the molecular mechanisms of epistasis, placing genes as the central entities, and focused on trusted resources describing a large set of human genes and their interactions. All entities in the KG are linked to their source database entry via an URI (Uniform Resource Identifier) to facilitate integrations within larger bioinformatics linked data repositories. We provide BOCK in two formats: <strong>RDF (Resource Description Framework): </strong>W3C standard for linked data exchange. Triplets are encoded in the Turtle syntax. Additionally, the KG model is provided in OWL. <strong>GraphML (Graph Markup Language)</strong>: a network format enabling the fast import of the KG by multiple libraries (e.g networkx) and tools (e.g Cytoscape).
description: This work was supported by the European Regional Development Fund (ERDF) and the Brussels-Capital Region-Innoviris within the framework of the Operational Programme 2014-2020 through the ERDF-2020 project ICITY-RDI.BRU [27.002.53.01.4524], an F.N.R.S-F.R.S CDR [35276964], an Innoviris Joint R\&D project Genome4Brussels [2020 RDIR 55b], a Research Foundation-Flanders (F.W.O.) Infrastructure project associated with ELIXIR Belgium [I002819N], the Imagica2 IRP project by the Vrije Universiteit Brussel [IRP8b] and by TAILOR, a project funded by the EU Horizon 2020 research and innovation program [952215]. The authors also thank Foundation 101 Genomes (f101g.org) for fruitful collaboration, creative exchange and scientific support.