cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.q93k7e
title: Occurrence Download

description: A dataset containing 499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-114.64723 10.24421,-78.35277 10.24421,-78.35277 24.75579,-114.64723 24.75579,-114.64723 10.24421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Reithrodontomys microdon Merriam, 1901"
 ]
}

 The dataset includes 499 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160759-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tef6dg
title: Occurrence Download

description: A dataset containing 4126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nyctiprogne leucopyga (von Spix, 1825))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4126 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293771-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.auhfpu
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Agave vizcainoensis Gentry"
 ]
}

 The dataset includes 38 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160758-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.see5r5
title: Occurrence Download

description: A dataset containing 15831 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Copepoda"
 ]
}

 The dataset includes 15831 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021163-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufdqha
title: Occurrence Download

description: A dataset containing 480 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Guatteria maypurensis Kunth"
 ]
}

 The dataset includes 480 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137164-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v8ku7k
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis clareae Hermans"
 ]
}

 The dataset includes 57 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010944-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbk62u
title: Occurrence Download

description: A dataset containing 107079 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cochlearia L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 107079 records from 396 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137160-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9janvx
title: Occurrence Download

description: A dataset containing 9935373 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico"
 ]
}

 The dataset includes 9935373 records from 2162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159551-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6cfuyf
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "TaxonKey is Paphiopedilum dianthum Tang & F.T.Wang"
 ]
}

 The dataset includes 43 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001546-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89y9gc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Gasteropelecus maculatus Steindachner, 1879"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001547-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/hcbz-ez36
title: Maximum latency prediction of AVB traffic in TSN

description: This dataset captures the maximum latency of AVB_A and AVB_B traffic flows under scheduled traffic conditions. The collected data includes several key parameters: in_1, which represents the priority level (6 for AVB_A and 5 for AVB_B); in_2, the traffic period; in_3, the average frame size of higher-priority traffic flows; in_4, the frame size of the respective traffic flow; in_5, the slot time; in_6, the GCL period; and in_7, the idleSlope. This dataset provides insights into latency behavior based on varying priorities, frame sizes, and scheduling configurations, supporting performance evaluations in time-sensitive networking environments.
DOI: 10.15468/dl.j4vdvr
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Riama simotera (O'Shaughnessy, 1879)"
 ]
}

 The dataset includes 57 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001548-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tufjyy
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Bhutan",
 "TaxonKey is Sphagnum L."
 ]
}

 The dataset includes 25 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001549-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13987893
title: Human gut commensal Alistipes timonensis modulates the host lipidome and delivers anti-inflammatory outer membrane vesicles to suppress colitis in an Il10-deficient mouse model
DOI: 10.5281/zenodo.13987894
title: Human gut commensal Alistipes timonensis modulates the host lipidome and delivers anti-inflammatory outer membrane vesicles to suppress colitis in an Il10-deficient mouse model
DOI: 10.15468/dl.p8qswt
title: Occurrence Download

description: A dataset containing 11461 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Database and digitization of bees in Thailand"
 ]
}

 The dataset includes 11461 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001550-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpzmpr
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eretmobrycon festae (Boulenger, 1898)"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001552-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hx4c3a
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Bhutan",
 "TaxonKey is Sphagnum L."
 ]
}

 The dataset includes 25 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001554-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvnyxn
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "TaxonKey is Paphiopedilum druryi (Bedd.) Stein"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001553-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ev6mzs
title: Occurrence Download

description: A dataset containing 795229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-81.79634 30.13797, -81.42719 30.13797, -81.42719 30.41164, -81.79634 30.41164, -81.79634 30.13797))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 795229 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001536-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rugnfw
title: Occurrence Download

description: A dataset containing 2873 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Geometry POLYGON((-129.46176 23.87999,-69.87889 23.87999,-69.87889 48.01482,-129.46176 48.01482,-129.46176 23.87999))",
 "TaxonKey is Ampullariidae"
 ]
}

 The dataset includes 2873 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001555-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c246gu
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Olea europaea L."
 ]
}

 The dataset includes 31 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001556-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.q2vinbx6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2069 records)
DOI: 10.5281/zenodo.10426238
title: Metagenome-assembled genomes (MAGs) from Stordalen Mire, Sweden

description: This is a pre-release of this MAG set, which is now published in ENA under BioProject PRJNA386568.FILES:



mags_emerge_20230110.tar.gz - Archive containing MAG files (.fna).

metadata_MAGs_EMERGE.tsv - Table containing MIMAG-formatted sample attributes, genome information, and other metadata (currently in draft form) for the MAGs. This table also includes JGI or NCBI genome accession #s for some additional MAGs that are not part of the .tar.gz archive. 



EDIT for Version 0.0.1-beta (published online 2023-12-22): Added corrections to sequencing_technology after clarifying the source metagenome versions.




 

FUNDING:

This research is a contribution of the EMERGE Biology Integration Institute (https://emerge-bii.github.io/), funded by the National Science Foundation, Biology Integration Institutes Program, Award # 2022070.

This study was also funded by the Genomic Science Program of the United States Department of Energy Office of Biological and Environmental Research, grant #s DE-SC0004632. DE-SC0010580. and DE-SC0016440.

We thank the Swedish Polar Research Secretariat and SITES for the support of the work done at the Abisko Scientific Research Station. SITES is supported by the Swedish Research Council's grant 4.3-2021-00164.

Data collected at the Joint Genome Institute was generated under the following awards:



The majority of sequencing at JGI was supported by BER Support Science Proposal 503530 (DOI: 10.46936/10.25585/60001148), conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.

Sequencing of SIP samples was performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative (proposal 503547; award DOI: 10.46936/fics.proj.2017.49950/60006215) and used resources at the DOE Joint Genome Institute (https://ror.org/04xm1d337) and the Environmental Molecular Sciences Laboratory (https://ror.org/04rc0xn13), which are DOE Office of Science User Facilities. Both facilities are sponsored by the Office of Biological and Environmental Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL).
DOI: 10.5281/zenodo.13984630
title: Metagenome-assembled genomes from Stordalen Mire, Sweden (MAGs v2)

description: This release (MAGs v2) is a major new version of this metagenome-assembled genome (MAG) set. All previous releases on this page (which only differ in the metadata) are designated "MAGs v1." The current release (MAGs v2) uses CheckM2 v1.0.2 filtering (≥70% completeness, ≤10% contamination) to expand this dataset to include 36,419 MAGs, with the following subcategories:



Cronin_v1:  Manually-curated subset of the "Field" category from MAGs v1.

Cronin_v2:  MAGs from raw bin filtering on the same assemblies used to generate Cronin_v1.

Woodcroft_v2:  MAGs from raw bin filtering on the same assemblies used to generate the MAGs reported in Woodcroft & Singleton et al. (2018).

SIPS:  Updated genomes from samples originating from a stable isotope probing (SIP) incubation experiment by Moira Hough et al. ("SIP" in MAGs v1), re-analyzed due to read truncation and sample linkage issues in MAGs v1.

JGI:  Expanded set of genomes from the Joint Genome Institute's metagenome annotation pipeline.


 

FILES:



Emerge_MAGs_v2.tar.gz - Archive containing the MAG files (.fna).

metadata_MAGs_v2_EMERGE.tsv - Table containing source sample names and accessions, GTDB taxonomy information, CheckM2 quality reports, NCBI GenomeBatch- and MIMAG(6.0)-formatted sample attributes and other metadata for the MAGs. 


 

FUNDING:

This research is a contribution of the EMERGE Biology Integration Institute (https://emerge-bii.github.io/), funded by the National Science Foundation, Biology Integration Institutes Program, Award # 2022070.

This study was also funded by the Genomic Science Program of the United States Department of Energy Office of Biological and Environmental Research, grant #s DE-SC0004632. DE-SC0010580. and DE-SC0016440.

We thank the Swedish Polar Research Secretariat and SITES for the support of the work done at the Abisko Scientific Research Station. SITES is supported by the Swedish Research Council's grant 4.3-2021-00164.

Data collected at the Joint Genome Institute was generated under the following awards:



The majority of sequencing at JGI was supported by BER Support Science Proposal 503530 (DOI: 10.46936/10.25585/60001148), conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.

Sequencing of SIP samples was performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative (proposal 503547; award DOI: 10.46936/fics.proj.2017.49950/60006215) and used resources at the DOE Joint Genome Institute (https://ror.org/04xm1d337) and the Environmental Molecular Sciences Laboratory (https://ror.org/04rc0xn13), which are DOE Office of Science User Facilities. Both facilities are sponsored by the Office of Biological and Environmental Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL).
DOI: 10.5281/zenodo.7586917
title: Metagenome-assembled genomes (MAGs) from Stordalen Mire, Sweden

description: This is a pre-release of this MAG set, which is now published in ENA under BioProject PRJNA386568.

FILES:



mags_emerge_20230110.tar.gz - Archive containing MAG files (.fna).

metadata_MAGs_EMERGE.tsv - Table containing MIMAG-formatted sample attributes, genome information, and other metadata (currently in draft form).


 

FUNDING:

This research is a contribution of the EMERGE Biology Integration Institute (https://emerge-bii.github.io/), funded by the National Science Foundation, Biology Integration Institutes Program, Award # 2022070.

This study was also funded by the Genomic Science Program of the United States Department of Energy Office of Biological and Environmental Research, grant #s DE-SC0004632. DE-SC0010580. and DE-SC0016440.

We thank the Swedish Polar Research Secretariat and SITES for the support of the work done at the Abisko Scientific Research Station. SITES is supported by the Swedish Research Council's grant 4.3-2021-00164.

Data collected at the Joint Genome Institute was generated under the following awards:



The majority of sequencing at JGI was supported by BER Support Science Proposal 503530 (DOI: 10.46936/10.25585/60001148), conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.

Sequencing of SIP samples was performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative (proposal 503547; award DOI: 10.46936/fics.proj.2017.49950/60006215) and used resources at the DOE Joint Genome Institute (https://ror.org/04xm1d337) and the Environmental Molecular Sciences Laboratory (https://ror.org/04rc0xn13), which are DOE Office of Science User Facilities. Both facilities are sponsored by the Office of Biological and Environmental Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL).
DOI: 10.5281/zenodo.7596016
title: Metagenome-assembled genomes (MAGs) from Stordalen Mire, Sweden

description: This is a pre-release of this MAG set, which is now published in ENA under BioProject PRJNA386568.FILES:



mags_emerge_20230110.tar.gz - Archive containing MAG files (.fna).

metadata_MAGs_EMERGE.tsv - Table containing MIMAG-formatted sample attributes, genome information, and other metadata (currently in draft form) for the MAGs. This table also includes JGI or NCBI genome accession #s for some additional MAGs that are not part of the .tar.gz archive. 


 

FUNDING:

This research is a contribution of the EMERGE Biology Integration Institute (https://emerge-bii.github.io/), funded by the National Science Foundation, Biology Integration Institutes Program, Award # 2022070.

This study was also funded by the Genomic Science Program of the United States Department of Energy Office of Biological and Environmental Research, grant #s DE-SC0004632. DE-SC0010580. and DE-SC0016440.

We thank the Swedish Polar Research Secretariat and SITES for the support of the work done at the Abisko Scientific Research Station. SITES is supported by the Swedish Research Council's grant 4.3-2021-00164.

Data collected at the Joint Genome Institute was generated under the following awards:



The majority of sequencing at JGI was supported by BER Support Science Proposal 503530 (DOI: 10.46936/10.25585/60001148), conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.

Sequencing of SIP samples was performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative (proposal 503547; award DOI: 10.46936/fics.proj.2017.49950/60006215) and used resources at the DOE Joint Genome Institute (https://ror.org/04xm1d337) and the Environmental Molecular Sciences Laboratory (https://ror.org/04rc0xn13), which are DOE Office of Science User Facilities. Both facilities are sponsored by the Office of Biological and Environmental Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL).
DOI: 10.6084/m9.figshare.27299778.v1
title: Resilience Mediates the Relationship Between Social Support and Anxiety in Postpartum Mothers (Open-Access Data)

description: This project contains the following data:- Data File. <i>(SPSS file containing raw data)</i>- Data Output. <i>(SPSS file containing analysis output)</i>
DOI: 10.15468/dl.22wu8a
title: Occurrence Download

description: A dataset containing 11461 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Database and digitization of bees in Thailand"
 ]
}

 The dataset includes 11461 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001558-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbkvzg
title: Occurrence Download

description: A dataset containing 6087 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-77.01761 17.9296, -76.83961 17.9296, -76.83961 18.04502, -77.01761 18.04502, -77.01761 17.9296))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 6087 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001559-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.