cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.m63xsj4dp
title: CanineHD 230 K BeadChip data from Miniature Dachshunds

description: Abstract Several hundred disease-causing mutations are currently known in
 domestic dogs. Breeding management is therefore required to minimize their
 spread. Recently, genetic methods such as direct-to-consumer testing have
 gained popularity; however, their effects on dog populations are
 unclear.  A variant in the RPGRIP1 gene is a causative element
 associated with cone-rod dysplasia 1 (cord1) and progressive retinal
 atrophy (PRA) in dogs, notably purebred Miniature Dachshunds (DHMs). Here,
 we aimed to evaluate the influence of genetic testing on the frequency of
 mutations responsible for canine PRA and assess the changes in the genetic
 structure of a DHMs population from Japan. To evaluate the influence of
 genetic testing on the frequency of mutations causing canine degenerative
 myelopathy and changes to genetic structure in the Pembroke Welsh corgi
 population from Japan, 117 dogs were genotyped. Weir and Cockerham
 population differentiation (FST) based on genome-wide single-nucleotide
 polymorphism (SNP) detected the SNP with the highest FST located in the
 intron of SOD1 adjacent to the c.118G&gt;A mutation, supporting a
 selection signature on SOD1. Further genome-wide SNP analyses revealed no
 obvious changes in inbreeding levels between the 2019 and 2022
 populations. Our study highlights that genetic testing can help inform
 improved mating choices in breeding programs to reduce the frequency of
 risk variants and avoid inbreeding.
description: Illumina's Canine 230K Consortium BeadChip data from 503 dogs. The
 breed is DSM from Japan. Several software tools, such as PLINK
 ([https://www.cog-genomics.org/plink/](https://www.cog-genomics.org/plink/)), can be used to analyze the following datasets. A text editor like EmEditor can be used to open the files. Dataset 1: 323 insured dogs DSM_Ins_QC.ped DSM_Ins_QC.map Dataset 2: 180 dogs from pet shops DSM_PS_QC.ped DSM_PS_QC.map
DOI: 10.5061/dryad.3ffbg79w5
title: Unraveling how keystone niche individuals contribute disproportionately to the population niche

description: Individual diet specialization is prevalent in wild populations and scales
 up to drive ecological processes at the population and community levels.
 As the population trophic niche emerges from the combination of foraging
 decisions made by individuals, specific individuals with particular niches
 can disproportionately contribute to the niche of their population, i.e.,
 keystone niche individuals. We investigated whether individuals of South
 American fur seals and sea lions differ in their contribution to the
 trophic niche width of their populations. To quantify trophic variation
 within and between individuals over long time frames, we analyzed stable
 isotopes (δ13C and δ15N) of serially sampled whiskers (18 individuals of
 O. flavescens and 20 of A. australis females; average of 33 measures per
 individual). We used these repeated observations per individual to model
 population-level trophic niches in the isotopic bivariate space,
 accounting for between and within-individual variation. Then, we estimated
 niche width, position, and orientation for each individual in the
 population. Finally, we quantified the relative contribution of each
 individual to the niche of its population by estimating how niche width
 changes when a given individual is removed from its population. While most
 conspecifics make negligible contributions, a few keystone niche
 individuals contribute disproportionately to population niche width.
 Individuals with niches located close to the population centroid promote
 the contraction of the population trophic niche, while individuals with
 niches located far from the population centroid promote its expansion.
 Further, wide individual niches with a divergent orientation compared to
 the population niche tend to expand the population niche width. Our
 findings reveal how intraspecific niche variation can shape population
 niches from the inside out, highlighting that individuals differ
 substantially in their contribution to patterns at higher levels of
 biological organization.
description: # Unraveling how keystone niche individuals contribute disproportionately
 to the population niche Dataset DOI:
 [10.5061/dryad.3ffbg79w5](10.5061/dryad.3ffbg79w5) ## Description of the
 data and file structure Carbon and nitrogen isotopic values of whiskers of
 South American fur seal (*Arctocephalus australis*) and sea lion (*Otaria
 flavescens*) from Uruguay **d13C and d15N:** Carbon and nitrogen isotope
 values for each individual. Each row represents the isotopic value of a
 whisker segment, permille (‰). **ID:** Individual identification.
 **pocion:** The segment of the whisker sampled for each individual. Each
 row of this variable represents a segment. **fecha:** The date (time
 window) represented by each segment. **year:** The year in which the
 entire whisker was collected. **Sp:** Aa: *Arctocephalus australis* and
 Of: *Otaria flavescens*. **Sexo:** Males (M) and females (H).
DOI: 10.5061/dryad.1jwstqk62
title: Differential avoidance of the odour of opposite sex mice receiving acute and repeated Lipopolysaccharide

description: This data set represents the odour preference ratios of four experimental
 groups (namely Group 1: "Female (Treated/Treated+Untreated)";
 Group 2: "Female (Treated/Treated+Blank)"; Group 3: "Male
 (Treated/Treated+Untreated)"; Group 4: "Male
 (Treated/Treated+Blank)"). Each of these four groups contains odour
 preference data from 10 mice at both Day 1 and Day 7 and that mouses odour
 preference to the three conditions (0 ug/kg; 1 ug/kg; 25 ug/kg). 
description: # Differential avoidance of the odour of opposite sex mice receiving acute
 and repeated Lipopolysaccharide Dataset DOI:
 [10.5061/dryad.1jwstqk62](10.5061/dryad.1jwstqk62) ## Description of the
 data and file structure Here we considered the responses of both male and
 female mice to the odours of opposite sex individuals acutely (Day 1) and
 repeatedly (Day 7) treated with very low and low doses of LPS (1.0 and 25
 μg/kg, respectively).  Odour preference ratio for an LPS treated male or
 female was calculated by dividing time spent in proximity of the LPS odour
 by the total time spent in proximity of both odours (i.e., [LPS treated
 (Day 1)]/[LPS treated (Day 1) + Untreated (Day 1)]. One sample t-tests
 were used to test whether the odour preferences differed from random
 (preference ratio of 0.5). ### Files and variables #### File:
 Preference_Data_(Proceedings_B).csv **Description:** Odour Preference Data
 showing preference ratios of both male and female mice in a Y-Maze  #####
 Variables * 0 ug/kg;1 ug/kg; 25 ug/kg are the doses of LPS that mice were
 treated with.  * ug/kg= microgram per kilogram  * Day 1 and Day 7: these
 were the days in which the mice were run through a Y-maze. Day 1, mice
 were exposed to odours of conspecifics that were treated with each
 respective dose of LPS for one day, while Day 7 was odours of mice treated
 with each respective dose of LPS at Day 7.  * Preference Ratios:
 calculated by dividing time spent in proximity of the LPS odour by the
 total time spent in proximity of both odours (i.e., [LPS treated (Day
 1)]/[LPS treated (Day 1) + Untreated (Day 1)]. * There are no missing
 values  ## Code/software Excel Version 16.95.3 is required
DOI: 10.5061/dryad.fn2z34v69
title: Data from: An experimental test of the effects of temperature and resource quality on carrying capacity

description: The Metabolic Theory of Ecology links the effects of temperature on
 metabolic rates at the cellular scale to large-scale ecological processes,
 providing a framework to predict how individuals, populations, and
 communities will respond to climate change. Metabolic Theory predicts that
 carrying shows a unimodal (hump-shaped) relationship with temperature, and
 that this hump will be flatter at low resource qualities. However, few
 studies have empirically tested this prediction, despite the importance of
 carrying capacity in understanding population persistence. To test the
 predicted effect of temperature on carrying capacity and to determine
 whether this is mediated by resource quality, we conducted a fully crossed
 experiment in which we grew populations of the model organism Tribolium
 castaneum for 22 weeks at all combinations of four temperatures (27.5 °C,
 30 °C, 32.5 °C, and 35 °C) and three resource qualities (flour types). Our
 results support the predictions that carrying capacity follows a unimodal
 relationship with temperature and that it declines at lower resource
 qualities. However, we found no interactive effect of temperature and
 resource quality on carrying capacity. These findings support recent
 updates to theory describing temperature’s effect on carrying capacity,
 and contribute to our understanding of how population dynamics will shift
 under climate change.
description: # Data for: The effects of temperature and resource quality on carrying
 capacity Dataset DOI: [10.5061/dryad.fn2z34v69](10.5061/dryad.fn2z34v69)
 ## Description of the data and file structure To investigate the effects
 of temperature and nutrient quality on carrying capacity, we conducted an
 experiment with *Tribolium castaneum* flour beetles in temperature and
 humidity-controlled growth chambers at the University of Guelph, Ontario.
 The experimental design consisted of four temperatures (27.5 °C, 30 °C,
 32.5 °C, and 35 °C) fully crossed with three resource levels (flour
 types), for a total of 16 treatments. Each treatment was replicated three
 times, resulting in a total of 36 experimental units (independent beetle
 population in a plastic container). We counted beetles for 11 counts (22
 weeks) and measured body size at the beginning (founder) and end of the
 experiment.  ### Files and variables #### File:
 Weiss_et_al._Dryad_data.xlsx ##### Variables * The dataset contains three
 sheets: "metadata," "census data," and "body size
 data." * Variables for the latter two sheets are described in the
 "metadata" sheet. ## Code/software Microsoft Excel
DOI: 10.15468/dl.pxqs7w
title: Occurrence Download

description: A dataset containing 647 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyperlophus vittatus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 647 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004299-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22tbfg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Golvanacanthus blennii",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004300-260126135527185/datasets/export for details.
DOI: 10.15468/dl.3vn2gk
title: Occurrence Download

description: A dataset containing 1106767 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus, Myocastor coypus)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1106767 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004260-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16886949
title: DIGMARS Datasets for Testing the Limits of Provenance Analysis from Basaltic Fluvial Sediment near Sandvatn, Iceland, as a Mars Analog

description: This repository contains datasets collected in the DIGMARS project as supplementary datasets for the manuscript Testing the Limits of Provenance Analysis from Basaltic Fluvial Sediment near Sandvatn, Iceland, as a Mars Analog submitted to Journal of Geophysical Research-Planets on 8-16-2025. The datasets will become pblic upon manuscript acceptance.
DOI: 10.5281/zenodo.17989951
title: DIGMARS Datasets for Testing the Limits of Provenance Analysis from Basaltic Fluvial Sediment near Sandvatn, Iceland, as a Mars Analog

description: This repository contains datasets collected in the DIGMARS project as supplementary datasets for the manuscript Testing the Limits of Provenance Analysis from Basaltic Fluvial Sediment near Sandvatn, Iceland, as a Mars Analog submitted to Journal of Geophysical Research-Planets on 8-16-2025. The datasets will become pblic upon manuscript acceptance.
DOI: 10.15468/dl.k49tsr
title: Occurrence Download

description: A dataset containing 751189 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Danaus plexippus"
 ]
}

 The dataset includes 751189 records from 375 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004281-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.13542968.v1
title: Geological Map and Cross Sections of the Nelson-Richmond Urban Area (South Island, New Zealand)

description: The Revised Geological Map of the Nelson-Richmond Urban area by M.R. Johnston, F. Ghisetti, P. Wopereis (2021) is a geo-referenced geological map superposed onto the NZTM2000 Topo50 Map BQ 26 (Nelson), This map updates the geology and structural setting of the Late Cretaceous-Quaternary units overlying the Eastern Province terranes, that were originally mapped by Johnston (1979, 1981; 1982). The revised map incorporates new stratigraphic and structural data made available in the last four decades by exposures at building sites, boreholes and trenches, as well as geomorphic information from LiDAR surveys undertaken by the Nelson City and Tasman District councils.
DOI: 10.6084/m9.figshare.13733335.v1
title: Supplementary Material for: Effect of an Intensive Weight-Loss Lifestyle Intervention on Kidney Function: A Randomized Controlled Trial

description: <b><i>Introduction:</i></b> Large randomized trials testing the effect of a multifactorial weight-loss lifestyle intervention including Mediterranean diet (MedDiet) on renal function are lacking. Here, we evaluated the 1-year efficacy of an intensive weight-loss intervention with an energy-reduced MedDiet (erMedDiet) plus increased physical activity (PA) on renal function. <b><i>Methods:</i></b> Randomized controlled “PREvención con DIeta MEDiterránea-Plus” (PREDIMED-Plus) trial is conducted in 23 Spanish centers comprising 208 primary care clinics. Overweight/obese (<i>n</i> = 6,719) adults aged 55–75 years with metabolic syndrome were randomly assigned (1:1) to an intensive weight-loss lifestyle intervention with an erMedDiet, PA promotion, and behavioral support (intervention) or usual-care advice to adhere to an energy-unrestricted MedDiet (control) between September 2013 and December 2016. The primary outcome was 1-year change in estimated glomerular filtration rate (eGFR). Secondary outcomes were changes in urine albumin-to-creatinine ratio (UACR), incidence of moderately/severely impaired eGFR (&lt;60 mL/min/1.73 m<sup>2</sup>) and micro- to macroalbuminuria (UACR ≥30 mg/g), and reversion of moderately (45 to &lt;60 mL/min/1.73 m<sup>2</sup>) to mildly impaired GFR (60 to &lt;90 mL/min/1.73 m<sup>2</sup>) or micro- to macroalbuminuria. <b><i>Results:</i></b> After 1 year, eGFR declined by 0.66 and 1.25 mL/min/1.73 m<sup>2</sup> in the intervention and control groups, respectively (mean difference, 0.58 mL/min/1.73 m<sup>2</sup>; 95% CI: 0.15–1.02). There were no between-group differences in mean UACR or micro- to macroalbuminuria changes. Moderately/severely impaired eGFR incidence and reversion of moderately to mildly impaired GFR were 40% lower (HR 0.60; 0.44–0.82) and 92% higher (HR 1.92; 1.35–2.73), respectively, in the intervention group. <b><i>Conclusions:</i></b> The PREDIMED-Plus lifestyle intervention approach may preserve renal function and delay CKD progression in overweight/obese adults.
DOI: 10.6084/m9.figshare.24058650.v1
title: Legacy Analysis of Dark Matter Annihilation from the Milky Way Dwarf Spheroidal Galaxies with 14 Years of Fermi-LAT Data: Data Products

description: This repository contains data products from the 14 year Fermi-LAT analysis of the Milky Way dSphs as described in McDaniel et al (2023). The included data products are the SED fits files and 2D TS profiles in the WIMP mass and cross section space. These are available for dSphs as well as the blank-field analysis, using both the standard likelihood and the weighted likelihood approach (see Appendix A). CSV data files are included containing relevant information about the dSphs (see table 1 of McDaniel+2024) and blank fields (RA & Dec).Also included is a python Jupyter Notebook to show basic usage of the data products. For Example, plotting the SED likelihoods, converting the SED likelihood to DM space, creating a combined TS profile, obtaining upper limits, etc. This is also stored as a static html file for easier viewing.<br>SEDs are stored as fits files in the output format of fermipy (see https://fermipy.readthedocs.io/en/latest/advanced/sed.html)TS profiles are stored as numpy arrays covering 40 logarithmically spaced mass values over the 1 GeV - 1 TeV mass range and 60 logarithmically spaced cross-section values covering the 10^-28 to 10^-22 cm^3/s cross section range. TS profiles including the J-factor prior and without are available, and are labeled with "Jprior" or "noprior" respectively.<br>
DOI: 10.6084/m9.figshare.25249819.v2
title: Simulation - Molecular dynamics

description: Molecular dynamics
DOI: 10.6084/m9.figshare.29134904.v1
title: <b>Study on the Influence Mechanism of Consumption Behavior in Digital Cultural Tourism Complexes in Hangzhou </b><b>—</b><b> An Empirical Analysis of TAM Based on S-O-R Framework</b>

description: Data for "<b>Study on the Influence Mechanism of Consumption Behavior in Digital Cultural Tourism Complexes in Hangzhou </b><b>—</b><b> An Empirical Analysis of TAM Based on S-O-R Framework</b>"
DOI: 10.6084/m9.figshare.6396005.v1
title: CharKey: An Electronic Identification Key for Wood Charcoal of French Guiana

description: We
propose here the first computer-aided identification key adapted to charcoal of
French Guiana, based on the wood anatomy of 507 species spread in 71 families,
which covers 86% of the tree families currently listed in this part of Amazonia.
The key records 26 anatomical features leading to 112 features states, almost all of which are illustrated by SEM photographs of charcoal. The whole tool, named CharKey, contains the key itself and
the associated database including photographs. It is accessible using the free software Xper²,
specifically conceived for taxonomic description and computer
aided-identification.
DOI: 10.6084/m9.figshare.15021981.v6
title: Growth of Lithium-Indium Dendrites in All-Solid-State Lithium-based Batteries with Sulfide Electrolytes

description: Source data produced and analyzed in the study "Growth of lithium-indium dendrites in all-solid-state lithium-based batteries with sulfide electrolytes".
DOI: 10.6084/m9.figshare.4269926.v1
title: Sparrowhawk wing CT images

description: CT images of a wing (left) of an adult female sparrowhawk (Accipiter nisus) scanned with a Nikon XTEK XTH 225 kV µCT system (80 kV, 100 µA, 0.25 mm aluminium filter, 25 µm/voxel of resolution ) at the Henry Moseley X-ray Imaging Facility, University of Manchester. Before the scan, the wing was treated with an ~3% iodine-based formalin buffered solution for enhancing the contrast of soft tissue (Li et al., 2015).
DOI: 10.6084/m9.figshare.4648714.v1
title: interactions.zip

description: Protein-protein interactions inferred with common short linear motifs between the virus HIV-1 and its human host.
DOI: 10.7294/26521039.v1
title: Dangerous Harbor Project - Lancaster County - Reel 260 - Road Records, 1653-1850 - TIFFs 1-50

description: This dataset includes 50 TIFF files showing road records from Lancaster County in Virginia. They were created in the establishment and management of county roads. These documents were collected in association with the Dangerous Harbor Project which used courthouse documents to identify escaped unfree laborers in the 17th century Chesapeake and the punishments associated with their escape. <br>To learn more about this project, please go to the Dangerous Harbor Website.
DOI: 10.17632/5j7mnfrwgm
title: Materials used in: The Spanish-Chilean trait emotional intelligence questionnaire-short form: The adaptation and validation of the TEIQue-SF in Chile

description: Materials used in: The Spanish-Chilean trait emotional intelligence questionnaire-short form: The adaptation and validation of the TEIQue-SF in Chile.
DOI: 10.6084/m9.figshare.24593070.v1
title: GPC raw data

description: Polymers were run by GPC, with full trace CSV files included.
DOI: 10.17632/r33j559s62
title: OpenSMOKE++: An object-oriented framework for the numerical modeling of reactive systems with detailed kinetic mechanisms

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract OpenSMOKE++ is a general framework for numerical simulations of reacting systems with detailed kinetic mechanisms, including thousands of chemical species and reactions. The framework is entirely written in object-oriented C++ and can be easily extended and customized by the user for specific systems, without having to modify the core functionality of the program. The OpenSMOKE++ framework can handle simulations of ideal chemical reactors (plug-flow, batch, and jet stirred reactors), shock-tu... Title of program: OpenSMOKE++ Catalogue Id: AEVY_v1_0 Nature of problem Evolution of reacting gas mixtures with detailed description of thermodynamic, kinetic and transport data. Versions of this program held in the CPC repository in Mendeley Data AEVY_v1_0; OpenSMOKE++; 10.1016/j.cpc.2015.02.014
DOI: 10.6084/m9.figshare.19397624.v2
title: Kang HM, Subramaniam M, Targ S, Nguyen M et al. 2017

description: Here, we introduce an in-silico algorithm demuxlet that harnesses naturally occurring genetic variation in a pool of cells from unrelated individuals to discover the sample identity of each cell and identify droplets containing cells from two different individuals (doublets). These two capabilities enable a simple multiplexing design that increases single cell library construction throughput by experimental design where cells from genetically diverse samples are multiplexed and captured at 2-10x over standard workflows. We further demonstrate the utility of sample multiplexing by characterizing the interindividual variability in cell type-specific responses of ~15k PBMCs to interferon-beta, a potent cytokine. Our computational tool enables sample multiplexing of droplet-based single cell RNA-seq for large-scale studies of population variation and could be extended to other single cell datasets that incorporate natural or synthetic DNA barcodes.<br><br>Full dataset available here: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE96583
DOI: 10.6084/m9.figshare.25611433.v1
title: 7540 genome information from Genetic diversity and spread dynamics of SARS-CoV-2 variants present in African populations

description: Genome information used in the analysis
DOI: 10.6084/m9.figshare.28598213.v2
title: Raw data

description: The goal was to assess the effectiveness of N-acetyl cysteine (NAC) in protecting the liver from phenytoin-induced hepatotoxicity in rats