cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10730372
title: MOESM2 of Comparative genomics reveals a novel genetic organization of the sad cluster in the sulfonamide-degrader ‘Candidatus Leucobacter sulfamidivorax’ strain GP

description: Additional file 2: Table S1. Mean coverage and GC content per strain and contig in the metagenome assembly of the consortium consisting of Achromobacter denitrificans PR1 and Candidatus Leubacter sulfamidivorax’ Table S2: Results from CheckM evalution of the draft assembly of the ‘Candidatus Leucobacter sulfamidivorax’ Table S3: List of all bacterial strain used for comparative genomics (T) type stain; (*) sulfanomide degraders; N.A not available; (bold) strains sequenced in this study;(1) available on Github [1]; * the 16S rRNA gene sequence of this strain has a gap between positions 706 and 761;** no rRNA was annotated in this sequence; cells highlighted in orange indicate strain for which the genome sequence became available after November 2018, and, therefore were not included in the comparative genomics studies to assess gene loss in strain GP Table S4: Complete and near complete (1 block missing = 1 ortholog gene missing) modules of the softcore genome of Leucobacter spp. and strain GP reconstructed in silico with KEGG Mapper [56]
DOI: 10.6084/m9.figshare.10730372.v1
title: MOESM2 of Comparative genomics reveals a novel genetic organization of the sad cluster in the sulfonamide-degrader ‘Candidatus Leucobacter sulfamidivorax’ strain GP

description: Additional file 2: Table S1. Mean coverage and GC content per strain and contig in the metagenome assembly of the consortium consisting of Achromobacter denitrificans PR1 and Candidatus Leubacter sulfamidivorax’ Table S2: Results from CheckM evalution of the draft assembly of the ‘Candidatus Leucobacter sulfamidivorax’ Table S3: List of all bacterial strain used for comparative genomics (T) type stain; (*) sulfanomide degraders; N.A not available; (bold) strains sequenced in this study;(1) available on Github [1]; * the 16S rRNA gene sequence of this strain has a gap between positions 706 and 761;** no rRNA was annotated in this sequence; cells highlighted in orange indicate strain for which the genome sequence became available after November 2018, and, therefore were not included in the comparative genomics studies to assess gene loss in strain GP Table S4: Complete and near complete (1 block missing = 1 ortholog gene missing) modules of the softcore genome of Leucobacter spp. and strain GP reconstructed in silico with KEGG Mapper [56]
DOI: 10.6084/m9.figshare.10730336
title: MOESM5 of Phylogeny-wide conservation and change in developmental expression, cell-type specificity and functional domains of the transcriptional regulators of social amoebas

description: Additional file 5: Table S4. Transcription factors with known knock-out phenotypes. Knock-out phenotypes of transcription factors combined with their cell-type- and stage specificity of expression.
DOI: 10.6084/m9.figshare.10730327
title: MOESM4 of Phylogeny-wide conservation and change in developmental expression, cell-type specificity and functional domains of the transcriptional regulators of social amoebas

description: Additional file 4: Table S3. Transcription factors grouped by cell-type and stage specificity. The data of Additional file 3: Table S2 were compiled and sorted to generate sets that were expressed in the same cell type or at the same developmental stage, or that shared a combination of the same stage and cell type specificity.
DOI: 10.6084/m9.figshare.10730336.v1
title: MOESM5 of Phylogeny-wide conservation and change in developmental expression, cell-type specificity and functional domains of the transcriptional regulators of social amoebas

description: Additional file 5: Table S4. Transcription factors with known knock-out phenotypes. Knock-out phenotypes of transcription factors combined with their cell-type- and stage specificity of expression.
DOI: 10.6084/m9.figshare.10730318
title: MOESM3 of Phylogeny-wide conservation and change in developmental expression, cell-type specificity and functional domains of the transcriptional regulators of social amoebas

description: Additional file 3: Table S2. Transcription factor conservation. Conservation and change in the presence, developmental expression and functional domain architecture in transcription factors across five Dictyostelid genomes.
DOI: 10.6084/m9.figshare.10730327.v1
title: MOESM4 of Phylogeny-wide conservation and change in developmental expression, cell-type specificity and functional domains of the transcriptional regulators of social amoebas

description: Additional file 4: Table S3. Transcription factors grouped by cell-type and stage specificity. The data of Additional file 3: Table S2 were compiled and sorted to generate sets that were expressed in the same cell type or at the same developmental stage, or that shared a combination of the same stage and cell type specificity.
DOI: 10.17632/krmdxh74z6.1
title: Dataset#1 Bone pathologies of modern non-working cattle (Bos taurus) in the context of grazing systems and environmental influences (based on materials from the South Urals, Russia)

description: Dataset#1 contains a list of all detected pathologies on the bones of modern cattle, as well as measurements of bones with pathologies. Dataset#1 is a part of the article ""Bone pathologies of modern non-working cattle (Bos taurus) in the context of grazing systems and environmental influences (based on materials from the South Urals, Russia)"" Abstract. The aim of the work is to assess the forms and boundaries of development of age-related changes and bone pathologies in modern non-working cattle for the possibility of using the results in the analysis of archaezooological collections and in the reconstruction of the working cattle exploitation in antiquity. Study area is located in the steppe zone of the Southern Urals on the territory of Russia near the border with Kazakhstan. About 300 bones of modern cattle were analyzed, most of which are represented by metapodials and phalanxes. When analyzing the material, various archaezoological methods were used to reconstruct the size of animals and describe pathologies. The main results of the work are evidence that minor lipping and exostoses of metapodials and phalanxes, as well as ankylosis and hip joint eburnation, are typical for non-working cattle. In rare cases, lipping and exostoses of 3-4 stages are observed. Another important result is the discovery of the relationship between osteophagia and pathologies of the dentition of cattle. The analyzed changes in the bones of the distal extremities cannot be used for categorical reconstruction of the working cattle when processing the archaezooological materials from archaeological sites, primarily in the East European steppe space. The study showed the vulnerability of reconstructing the working cattle exploitation based only on osteological markers. Obviously, for such reconstructions, all available evidence should be involved, and not just single pathologies of the skeletal system.
DOI: 10.6084/m9.figshare.10730318.v1
title: MOESM3 of Phylogeny-wide conservation and change in developmental expression, cell-type specificity and functional domains of the transcriptional regulators of social amoebas

description: Additional file 3: Table S2. Transcription factor conservation. Conservation and change in the presence, developmental expression and functional domain architecture in transcription factors across five Dictyostelid genomes.
DOI: 10.6084/m9.figshare.10730309
title: MOESM2 of Phylogeny-wide conservation and change in developmental expression, cell-type specificity and functional domains of the transcriptional regulators of social amoebas

description: Additional file 2: Table S1. Gene expression profiles. Normalized transcript read counts of developmental time series and purified cell types from five Dictyostelium species.
DOI: 10.6084/m9.figshare.10730309.v1
title: MOESM2 of Phylogeny-wide conservation and change in developmental expression, cell-type specificity and functional domains of the transcriptional regulators of social amoebas

description: Additional file 2: Table S1. Gene expression profiles. Normalized transcript read counts of developmental time series and purified cell types from five Dictyostelium species.
DOI: 10.17632/4p82py3dw9.1
title: Dataset#2 The sedentary pastoralism at the turn of the III–II millennium BC in the Southern Trans-Urals based on archaeozoological materials of the settlement Kamennyi Ambar

description: Dataset#2 contains data and images of the modern grazing system, the environment, modification changes in bones and pathologies of livestock from the fortified (enclosed) settlement of Kamennyi Ambar of the Sintashta culture and the Late Bronze Age. Dataset#2 is part of the article '''The sedentary pastoralism at the turn of the III–II millennium BC in the Southern Trans-Urals based on archaeozoological materials of the settlement Kamennyi Ambar''" The article is devoted to the analysis of archaezooological material of one of two dozen fortified settlements of the Middle Bronze Age, which are located in a compact group in the steppe zone on the border of Russia and Kazakhstan. The early construction horizons of the Kamennyi Ambar settlement are associated with Sintashta culture. The second stage of the functioning of the settlement is associated with the Srubno-Alakul period. Due to the strong mixing of the layers, animal husbandry of the inhabitants of the settlement is considered in the period from 2100–1700 cal BC. The purpose of the article is to clarify a number of aspects of livestock farming and the reconstruction of some issues that previously either were not considered, or were of a hypothetical nature. Sources of work are an extensive archaezooological collection from several excavations of the settlement and data on the characteristics of bone material from modern enclosures in the Karagaily-Ayat river valley. This includes osteological markers of summer enclosures, pathologies of modern livestock, data on osteophagia of domestic ungulates, and results of observation of modern livestock grazing. Bones from the Kamennyi Ambar settlement and modern enclosures were analyzed using standard and generally accepted archaezooological methods. An analysis of the archaeozoological collection has confirmed the pastoralist character of the settlement throughout its existence. The inhabitants of the settlement complexly exploited cattle, sheep, goats and horses. Paleopathological analysis allows you to reconstruct the possible working exploitation of bulls, but there is no reason for a horse to make such a conclusion. A number of direct and indirect evidence allows us to consider this archaeological site under study the year-round inhabited settlement of settled cattle breeders. Collectives of the Kamennyi Ambar actively exploited the resources of the valley within a radius of 15 km. Favorable conditions of the Karagaily-Ayat river valley made it possible to switch to a settled model of animal husbandry and supposedly improve the dimensional characteristics of livestock. The houses of the settlement were used as a stall not only in winter, but probably in summer.
DOI: 10.6084/m9.figshare.10730267
title: MOESM1 of Risk factors for foot ulceration in adults with end-stage renal disease on dialysis: a prospective observational cohort study

description: Additional file 1. Complete dataset of participant characteristics according to foot ulceration status at follow-up. Table showing the complete dataset of participant characteristics according to foot ulceration status at follow-up.
DOI: 10.6084/m9.figshare.10730255
title: MOESM9 of Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs

description: Additional file 9: Table S6. Overrepresentation analysis for genes only differentially expressed in three cell types and complete tissue.
DOI: 10.6084/m9.figshare.10730255.v1
title: MOESM9 of Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs

description: Additional file 9: Table S6. Overrepresentation analysis for genes only differentially expressed in three cell types and complete tissue.
DOI: 10.6084/m9.figshare.10730249
title: MOESM8 of Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs

description: Additional file 8: Table S5. Top 10 up- and downregulated genes in luminal epithelium (LE), glandular epithelium (GE), blood vessels (BV), stromal cells (S), and complete tissue.
DOI: 10.6084/m9.figshare.10730267.v1
title: MOESM1 of Risk factors for foot ulceration in adults with end-stage renal disease on dialysis: a prospective observational cohort study

description: Additional file 1. Complete dataset of participant characteristics according to foot ulceration status at follow-up. Table showing the complete dataset of participant characteristics according to foot ulceration status at follow-up.
DOI: 10.17632/whk3v6z8fg.1
title: Dataset#1 The sedentary pastoralism at the turn of the III–II millennium BC in the Southern Trans-Urals based on archaeozoological materials of the settlement Kamennyi Ambar

description: The dataset contains primary data, the measurements of the bones of livestock, a list of all pathologies and the size of bones with pathologies, as well as a list of bone products. The dataset is part of the article ""The sedentary pastoralism at the turn of the III–II millennium BC in the Southern Trans-Urals based on archaeozoological materials of the settlement Kamennyi Ambar"". The work is devoted to the analysis of archaezooological material of one of two dozen fortified settlements of the Middle Bronze Age, which are located in a compact group in the steppe zone on the border of Russia and Kazakhstan. The early construction horizons of the Kamennyi Ambar settlement are associated with Sintashta culture. The second stage of the functioning of the settlement is associated with the Srubno-Alakul period. Due to the strong mixing of the layers, animal husbandry of the inhabitants of the settlement is considered in the period from 2100–1700 cal BC. The purpose of the article is to clarify a number of aspects of livestock farming and the reconstruction of some issues that previously either were not considered, or were of a hypothetical nature. Sources of work are an extensive archaezooological collection from several excavations of the settlement and data on the characteristics of bone material from modern enclosures in the Karagaily-Ayat river valley. This includes osteological markers of summer enclosures, pathologies of modern livestock, data on osteophagia of domestic ungulates, and results of observation of modern livestock grazing. Bones from the Kamennyi Ambar settlement and modern enclosures were analyzed using standard and generally accepted archaezooological methods. An analysis of the archaeozoological collection has confirmed the pastoralist character of the settlement throughout its existence. The inhabitants of the settlement complexly exploited cattle, sheep, goats and horses. Paleopathological analysis allows you to reconstruct the possible working exploitation of bulls, but there is no reason for a horse to make such a conclusion. A number of direct and indirect evidence allows us to consider this archaeological site under study the year-round inhabited settlement of settled cattle breeders. Collectives of the Kamennyi Ambar actively exploited the resources of the valley within a radius of 15 km. Favorable conditions of the Karagaily-Ayat river valley made it possible to switch to a settled model of animal husbandry and supposedly improve the dimensional characteristics of livestock. The houses of the settlement were used as a stall not only in winter, but probably in summer.
DOI: 10.6084/m9.figshare.10730243
title: MOESM7 of Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs

description: Additional file 7: Table S4. Comparative DAVID GO chart analysis.
DOI: 10.6084/m9.figshare.10730249.v1
title: MOESM8 of Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs

description: Additional file 8: Table S5. Top 10 up- and downregulated genes in luminal epithelium (LE), glandular epithelium (GE), blood vessels (BV), stromal cells (S), and complete tissue.
DOI: 10.6084/m9.figshare.10730234
title: MOESM5 of Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs

description: Additional file 5: Table S2. Detectable genes in luminal epithelium (LE), glandular epithelium (GE), stroma (S), and complete tissue.
DOI: 10.6084/m9.figshare.10730240
title: MOESM6 of Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs

description: Additional file 6: Table S3. Differentially expressed genes in luminal epithelium (LE), glandular epithelium (GE), stroma (S), and complete tissue.
DOI: 10.6084/m9.figshare.10730234.v1
title: MOESM5 of Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs

description: Additional file 5: Table S2. Detectable genes in luminal epithelium (LE), glandular epithelium (GE), stroma (S), and complete tissue.
DOI: 10.6084/m9.figshare.10730240.v1
title: MOESM6 of Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs

description: Additional file 6: Table S3. Differentially expressed genes in luminal epithelium (LE), glandular epithelium (GE), stroma (S), and complete tissue.
DOI: 10.6084/m9.figshare.10730243.v1
title: MOESM7 of Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs

description: Additional file 7: Table S4. Comparative DAVID GO chart analysis.
DOI: 10.6084/m9.figshare.10730204
title: MOESM10 of Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs

description: Additional file 10: Table S7. DEGs involved in cell adhesion and immune response signaling pathways.
DOI: 10.6084/m9.figshare.10730201
title: MOESM1 of Agreement between self-reported asthma symptoms and exhaled nitric oxide levels: impact on inhaled corticosteroid prescribing in general practice. An observational study

description: Additional file 1. Raw data collection FeNO vs ACT.
DOI: 10.35078/0l4ltq/xm4quq
title: Matinha II B.jpg

description: :unav
DOI: 10.35078/iwgfbh/ueysak
title: Barra do Lageado C.jpg

description: :unav
DOI: 10.35078/0l4ltq/ac6ixr
title: Nossa Senhora de Lourdes F.jpg

description: :unav
DOI: 10.35078/iwgfbh/ebyglz
title: Bebedouro A.jpg

description: :unav
DOI: 10.35078/0l4ltq/nhtawe
title: Morro Alto II G.jpg

description: :unav
DOI: 10.35078/iwgfbh/po8aqa
title: Casa Azul A.jpg

description: :unav
DOI: 10.35078/0l4ltq/f29gqy
title: Tijuco A.jpg

description: :unav
DOI: 10.35078/iwgfbh/afh2eb
title: Córrego Sapecado B.jpg

description: :unav
DOI: 10.35078/0l4ltq/iirrhw
title: Santo Antônio II F.jpg

description: :unav
DOI: 10.35078/iwgfbh/l4duhk
title: Acampamento DER Rio Claro C.jpg

description: :unav
DOI: 10.35078/iwgfbh/kbrpai
title: Capão Alto B.jpg

description: :unav
DOI: 10.35078/0l4ltq/tmstot
title: Posto Calcário Triângulo C.jpg

description: :unav
DOI: 10.35078/iwgfbh/9cugox
title: Cocal D.jpg

description: :unav
DOI: 10.35078/0l4ltq/1kiz42
title: Maria Toteiro G.jpg

description: :unav
DOI: 10.35078/iwgfbh/g1yzsz
title: Caiçara A.jpg

description: :unav
DOI: 10.35078/0l4ltq/jpyi81
title: José Nascimento A.jpg

description: :unav
DOI: 10.35078/iwgfbh/qxriie
title: Cachoeira E.jpg

description: :unav
DOI: 10.35078/0l4ltq/vljdjx
title: São Sebastião H.jpg

description: :unav
DOI: 10.35078/0l4ltq/bfxtep
title: Otaviano Dias B.jpg

description: :unav
DOI: 10.35078/iwgfbh/juaok4
title: Conquistinha B.jpg

description: :unav
DOI: 10.35078/0l4ltq/74yupz
title: Siriema B.jpg

description: :unav
DOI: 10.35078/iwgfbh/ikp3q8
title: João Campos B.jpg

description: :unav
DOI: 10.35078/iwgfbh/jedgcl
title: Córrego dos Mangues B.jpg

description: :unav
DOI: 10.35078/0l4ltq/fstxtf
title: Léia Acamp. C.jpg

description: :unav
DOI: 10.35078/iwgfbh/i0tcbt
title: Irmãos Fatureto B.jpg

description: :unav
DOI: 10.35078/0l4ltq/wrabmy
title: Lageado E.jpg

description: :unav
DOI: 10.35078/iwgfbh/z8rw6r
title: Abel Gouveia E.jpg

description: :unav
DOI: 10.35078/iwgfbh/c9szmc
title: Cedro B.jpg

description: :unav
DOI: 10.35078/0l4ltq/aw0a0h
title: Posto Calcário Triângulo B.jpg

description: :unav
DOI: 10.35078/iwgfbh/4d2na0
title: Badajós I B.jpg

description: :unav
DOI: 10.35078/0l4ltq/bvxuov
title: Toldas D.jpg

description: :unav
DOI: 10.6084/m9.figshare.12597611
title: Supplementary Data for Vitek et al. 2020 Integrative Organismal Biology

description: The attached file contains supplementary data, including measurement data input into analytical code and supplementary results not reported in the manuscript "Mammal molar size ratios and the inhibitory cascade at the intraspecific scale" by N.S. Vitek, C.C. Roseman, and J.I. Bloch accepted to the journal Integrative Organismal Biology
DOI: 10.6084/m9.figshare.12597611.v1
title: Supplementary Data for Vitek et al. 2020 Integrative Organismal Biology

description: The attached file contains supplementary data, including measurement data input into analytical code and supplementary results not reported in the manuscript "Mammal molar size ratios and the inhibitory cascade at the intraspecific scale" by N.S. Vitek, C.C. Roseman, and J.I. Bloch accepted to the journal Integrative Organismal Biology
DOI: 10.35078/iwgfbh/scjrcr
title: Guariba D.jpg

description: :unav
DOI: 10.35078/0l4ltq/avqwlj
title: Monte Alegre B.jpg

description: :unav
DOI: 10.35078/iwgfbh/wstdmc
title: Barreiro A.jpg

description: :unav
DOI: 10.35078/0l4ltq/qh8pih
title: Quartel Chácara B.jpg

description: :unav
DOI: 10.35078/iwgfbh/ilqiyv
title: Cruzeiro do Sul C.jpg

description: :unav
DOI: 10.35078/0l4ltq/1sp3ln
title: Ponte Alta Vila B.jpg

description: :unav
DOI: 10.35078/iwgfbh/amluts
title: Barreiro E.jpg

description: :unav
DOI: 10.35078/0l4ltq/r88rrs
title: Santo Antônio II A.jpg

description: :unav
DOI: 10.35078/iwgfbh/bwr7nq
title: Capelinha do Barreiro Pov. C.jpg

description: :unav
DOI: 10.35078/0l4ltq/nyix7j
title: Salvador Miziara E.jpg

description: :unav
DOI: 10.35078/0l4ltq/h7famj
title: Pedro Joaquim F.jpg

description: :unav
DOI: 10.35078/iwgfbh/flzage
title: Córrego dos Ovos A.jpg

description: :unav
DOI: 10.35078/iwgfbh/hfr4pa
title: Capão Negro B.jpg

description: :unav
DOI: 10.35078/0l4ltq/fnzhnf
title: Quartel Vila F.jpg

description: :unav
DOI: 10.35078/iwgfbh/wq1uzl
title: Alcísio Mendes E.jpg

description: :unav
DOI: 10.35078/0l4ltq/y6ttq9
title: Vargem Grande A.jpg

description: :unav
DOI: 10.35078/iwgfbh/up23em
title: Chuá Velho D.jpg

description: :unav
DOI: 10.35078/0l4ltq/n0v6tp
title: Santos Oliveira D.jpg

description: :unav
DOI: 10.35078/iwgfbh/fbrkl5
title: Córrego dos Mangues G.jpg

description: :unav
DOI: 10.35078/0l4ltq/zxwmnl
title: Ribeirão da Pedra Alta A.jpg

description: :unav
DOI: 10.35078/iwgfbh/rwa4rt
title: Antônio Zota C.jpg

description: :unav
DOI: 10.35078/iwgfbh/dygc5b
title: Capão da Lagoa A.jpg

description: :unav
DOI: 10.35078/0l4ltq/smg476
title: Mozart Furtado E.jpg

description: :unav
DOI: 10.35078/iwgfbh/lnpalc
title: Brejão E.jpg

description: :unav
DOI: 10.35078/0l4ltq/zm2yfk
title: Pequi B.jpg

description: :unav
DOI: 10.35078/0l4ltq/sh9pks
title: Saudade C.jpg

description: :unav
DOI: 10.35078/iwgfbh/darxar
title: Córrego Veadinho I G.jpg

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DOI: 10.35078/iwgfbh/q3gi9x
title: Granja Mendes A.jpg

description: :unav
DOI: 10.35078/0l4ltq/rdbk5q
title: Lageado Sítio C.jpg

description: :unav
DOI: 10.35078/iwgfbh/ulzd5e
title: Barreirinho D.jpg

description: :unav
DOI: 10.35078/0l4ltq/jdobdo
title: Pedro Fachinelli F.jpg

description: :unav
DOI: 10.35078/iwgfbh/fndn68
title: Dias C.jpg

description: :unav
DOI: 10.35078/0l4ltq/urwev2
title: Uberaba Cid. D.jpg

description: :unav
DOI: 10.35078/iwgfbh/psfhen
title: Arlindo Carvalho A.jpg

description: :unav
DOI: 10.35078/0l4ltq/jjnobt
title: Tangará A.jpg

description: :unav