cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14466/cefasdatahub.82
title: Fladen experimental fishing impact recovery data - Acoustic data

description: Output imagery of multibeam echosounder backscatter (tiffs) from within six experimental boxes (three treatments and three control) during a fishing impact recovery survey within the Fladen Grounds. Data were collected at three time points (before impact (time 0), immediately after impact (time 1) and 8 months after impact (time 2) during two research surveys on the RV Cefas Endeavour in April 2015 and November 2015. One hundred percent multibeam bathymetry and backscatter data were acquired in six experimental boxes and at all time points (Time 0, Time 1 and Time 2) using a Kongsberg EM2040 system operated at 300 kHz and deployed on the drop keel of the research vessel. Variations in sound velocity with water depth were determined using a CTD (Conductivity Temperature Depth) probe and applied during Multibeam data acquisition. Tidal information was gathered using a CNAV 3050 DGPS receiver. Tide height data was processed using c-Tide software and applied as a tidal correction during the processing of the bathymetry data. Survey lines were spaced at 16m across the box in an North South orientation. Two survey lines ensured 100% multibeam echosounder data coverage and overlap while a third line, in an East West orientation, was completed at each box for data quality purposes. Bathymetric data were processed for coverage and comparison using the Caris HIPS SIPS software. Backscatter data were processed in Fledermaus geocoder tool box (FMGT) for coverage and comparison. The raw Multibeam files were processed in Caris HIPS SIPS, which resulted in tidally corrected bathymetric soundings being produced. These soundings were hydrographically reviewed, and any erroneous soundings removed from the dataset. The time-series seabed reflectivity values (backscatter) were processed using QPS FMGT (Fledermaus GeoCoder Toolkit). This software package contains an implementation of the Geocoder algorithm which normalises and corrects the backscatter values for time varying gain, angular varying gain, and slope aspect. The resultant processed backscatter values were then analysed in ESRI ArcMap, and output imagery generated.
DOI: 10.5281/zenodo.6536085
title: Ontario Lake-River Routing Product version 1.0

description: Thank you for your interest in our lake-river routing product. Please go to this website to download and learn more about the Routing product and BasinMaker. In your publication using the version v1.0 of the routing product, please cite the following paper: BasinMaker: a GIS toolbox for distributed watershed delineation of complex lake and river routing networks. Han, M., H. Shen, B. A. Tolson, J. R. Craig, J. Mai, S. Lin, N. Basu, F. Awol, submitted April 2021 to Environmental Modelling and Software. (But please also check BasinMaker website where you downloaded this for the most up to date citation) Note that version 1.0 of this product covered only Canada and used a different DEM and is described in the following paper: Han, M., J. Mai, B. A. Tolson, J. R. Craig, E. Gaborit, H. Liu, K. Lee, Subwatershed-based lake and river routing products for hydrologic and land surface models applied over Canada, Canadian Water Resources Journal, 45(3), doi.org/10.1080/07011784.2020.1772116. The lake-river routing product provides a routing structure (which here refers to both the topology of the stream network and the contributing areas to individual lakes and stream reaches), to correctly represent lakes and be easily customized based on various user requirements. BasinMaker, which is a GIS toolbox to delineate watersheds with lakes, was used to develop this routing product. In this routing product, each lake is represented by a lake catchment. A lake catchment is defined by the following rules:1) The extent of the lake catchment will fully cover the lake; 2) the outlet of the lake catchment is the same as the outlet of the lake; 3) each lake’s inlets are treated as a catchment outlet. In this way, both inflow and outflow of each lake can be explicitly simulated by hydrologic routing models. Support for BasinMaker and the Ontario lake-river routing product development came from the Ontario Ministry of Northern Development, Mines, Natural Resources and Forestry.
DOI: 10.5281/zenodo.6536084
title: Ontario Lake-River Routing Product version 1.0

description: Thank you for your interest in our lake-river routing product. Please go to this website to download and learn more about the Routing product and BasinMaker. In your publication using the version v1.0 of the routing product, please cite the following paper: BasinMaker: a GIS toolbox for distributed watershed delineation of complex lake and river routing networks. Han, M., H. Shen, B. A. Tolson, J. R. Craig, J. Mai, S. Lin, N. Basu, F. Awol, submitted April 2021 to Environmental Modelling and Software. (But please also check BasinMaker website where you downloaded this for the most up to date citation) Note that version 1.0 of this product covered only Canada and used a different DEM and is described in the following paper: Han, M., J. Mai, B. A. Tolson, J. R. Craig, E. Gaborit, H. Liu, K. Lee, Subwatershed-based lake and river routing products for hydrologic and land surface models applied over Canada, Canadian Water Resources Journal, 45(3), doi.org/10.1080/07011784.2020.1772116. The lake-river routing product provides a routing structure (which here refers to both the topology of the stream network and the contributing areas to individual lakes and stream reaches), to correctly represent lakes and be easily customized based on various user requirements. BasinMaker, which is a GIS toolbox to delineate watersheds with lakes, was used to develop this routing product. In this routing product, each lake is represented by a lake catchment. A lake catchment is defined by the following rules:1) The extent of the lake catchment will fully cover the lake; 2) the outlet of the lake catchment is the same as the outlet of the lake; 3) each lake’s inlets are treated as a catchment outlet. In this way, both inflow and outflow of each lake can be explicitly simulated by hydrologic routing models. Support for BasinMaker and the Ontario lake-river routing product development came from the Ontario Ministry of Northern Development, Mines, Natural Resources and Forestry.
DOI: 10.17036/researchdata.aston.ac.uk.00000546
title: All-optical any-to-any wavelength conversion across 36nm range
DOI: 10.13020/4nsz-x660
title: Data supporting: Comparing Drosophila suzukii (Matsumura) (Diptera: Drosophilidae) flight behavior using free flight and tethered flight assays
DOI: 10.5281/zenodo.6523884
title: Embeddings models for Buddhist Sanskrit: Evaluation Datasets

description: Evaluation Dataset used for the study published as Embeddings models for Buddhist Sanskrit, <em>LREC 2022 proceedings</em>. It contains a semantic similarity dataset and an analogy dataset, as well as the published study and a ReadMe file containing the guidelines used for scoring semantic similarity and some notes about the manual scoring task. The evaluation datasets have been prepared by Ligeia Lugli, Bruno Galasek-Hul, Luis Quiñones and Jai Paranjape
description: This study was funded by a NEH Digital Advancement Grant level 2 (HAA-277246-21)
DOI: 10.5281/zenodo.6523883
title: Embeddings models for Buddhist Sanskrit: Evaluation Datasets

description: Evaluation Dataset used for the study published as Embeddings models for Buddhist Sanskrit, <em>LREC 2022 proceedings</em>. It contains a semantic similarity dataset and an analogy dataset, as well as the published study and a ReadMe file containing the guidelines used for scoring semantic similarity and some notes about the manual scoring task. The evaluation datasets have been prepared by Ligeia Lugli, Bruno Galasek-Hul, Luis Quiñones and Jai Paranjape
description: This study was funded by a NEH Digital Advancement Grant level 2 (HAA-277246-21)
DOI: 10.15129/47cd5ff3-126e-4e7a-a7a1-6eca449fd490
title: Data for: "Smart Silk Origami as Eco-Sensors for Environmental Pollution"

description: Origami folding is an easy, cost-effective, and scalable fabrication method for changing a flat material into a complex 3D functional shape. Here, we created semicrystalline silk films doped with iron oxide particles by mold casting and annealing. The flat silk films could be loaded with natural dyes and folded into 3D geometries using origami principles following plasticization. They performed locomotion under a magnetic field, were reusable and displayed colorimetric stability for 31 days at room temperature in vacuo. The critical parameters for the design of the semi-autonomous silk film, including ease of folding, shape preservation and locomotion in the presence of a magnetic field, were characterized, and pH detection was achieved by eye and by digital image colorimetry with a response time below 1 min. We demonstrate a practical application—a battery-free origami silk boat—as a colorimetric sensor for waterborne pollutants which was reusable at least five times. This work introduces silk eco-sensors and merges responsive actuation and origami techniques.
DOI: 10.5281/zenodo.6535148
title: Plant–insect interactions from the mid-Cretaceous at Puy-Puy (Aquitaine Basin, western France) indicates preferential herbivory for angiosperms amid a forest of ferns, gymnosperms, and angiosperms

description: The nine in-text figures and table below (Appendices S1–S10), and the additional text and excel files attached, provide the raw data, summaries of the raw data, rarefaction analyses, and nonmetric multidimensional scale analyses (NMDS) that support the discussions of the main text. The raw data and their summaries of provide for each plant species or morphotype values important for assessment of their herbivory: percentage of specimens herbivorized, damage type (DT) richness, DT frequency, DT host-plant specificity, herbivorized surface area as a proportion of total surface area, and feeding event occurrences. The rarefaction analyses furnished evaluations of whether the number of samples was sufficient, given the surface area covered by those samples. For comparison, the number of samples was rarified to the number of DTs in those samples. Lastly, two NMDS analyses produced the relationships between the plant orders present in the plant assemblage and their interactive functional feeding groups (FFGs). A separate NMDS analysis shows the association between the three most herbivorized species and their FFGs.
DOI: 10.5281/zenodo.6535147
title: Plant–insect interactions from the mid-Cretaceous at Puy-Puy (Aquitaine Basin, western France) indicates preferential herbivory for angiosperms amid a forest of ferns, gymnosperms, and angiosperms

description: The nine in-text figures and table below (Appendices S1–S10), and the additional text and excel files attached, provide the raw data, summaries of the raw data, rarefaction analyses, and nonmetric multidimensional scale analyses (NMDS) that support the discussions of the main text. The raw data and their summaries of provide for each plant species or morphotype values important for assessment of their herbivory: percentage of specimens herbivorized, damage type (DT) richness, DT frequency, DT host-plant specificity, herbivorized surface area as a proportion of total surface area, and feeding event occurrences. The rarefaction analyses furnished evaluations of whether the number of samples was sufficient, given the surface area covered by those samples. For comparison, the number of samples was rarified to the number of DTs in those samples. Lastly, two NMDS analyses produced the relationships between the plant orders present in the plant assemblage and their interactive functional feeding groups (FFGs). A separate NMDS analysis shows the association between the three most herbivorized species and their FFGs.
DOI: 10.5517/ccdc.csd.cc2bdh8j
title: CCDC 2156957: Experimental Crystal Structure Determination

description: Related Article: Kazuishi Fukuda, Takuma Harada, Nobuharu Iwasawa, Jun Takaya|2022|Dalton Trans.|51|7035|doi:10.1039/D2DT01222G
DOI: 10.5517/ccdc.csd.cc2bdh9k
title: CCDC 2156958: Experimental Crystal Structure Determination

description: Related Article: Kazuishi Fukuda, Takuma Harada, Nobuharu Iwasawa, Jun Takaya|2022|Dalton Trans.|51|7035|doi:10.1039/D2DT01222G
DOI: 10.5517/ccdc.csd.cc2bdhbl
title: CCDC 2156959: Experimental Crystal Structure Determination

description: Related Article: Kazuishi Fukuda, Takuma Harada, Nobuharu Iwasawa, Jun Takaya|2022|Dalton Trans.|51|7035|doi:10.1039/D2DT01222G
DOI: 10.5281/zenodo.6536293
title: data for 2021JD036418

description: Data for 2021JD036418 to plot the figures.
DOI: 10.6084/m9.figshare.19739884
title: RefSeq Datasets for benchmarking - Ho et al.

description: <strong>All complete phage genomes deposited in RefSeq between 1 January 2020 and 12 August 2021 quality controlled, dereplicated, and fragmented to create a positive set of artificial contigs. These were then also randomly shuffled to produce a further negative control.</strong> <br> <strong>All complete bacterial and archaeal chromosomes deposited in RefSeq between 1 January 2020 and 12 August 2021 quality controlled, dereplicated, subsetted, and fragmented to create a negative set of artificial contigs. </strong> <br> <strong>All complete bacterial and archaeal plasmids deposited in RefSeq between 1 January 2020 and 12 August 2021 quality controlled, dereplicated, subsetted, and fragmented to create a negative set of artificial contigs. </strong> <br> <br> <br>
DOI: 10.6084/m9.figshare.19740055
title: Supplementary Material for: Effect of Germline MEFV polymorphisms on the prognosis of Japanese children with cancer: A regional analysis

description: Introduction: MEFV is the gene responsible for familial Mediterranean fever (FMF). It encodes pyrin, which controls inflammation; Besides, previous studies have reported that some germline MEFV variants were associated with tumour susceptibility. Materials and Methods: The loci of 12 germline MEFV variants were genotyped in 153 Japanese children with cancer, and the frequencies of these variants among the patient groups were compared with those in the general Japanese population. Additionally, the relationship between these variants and clinical data, including relapse and death, was investigated. Results: Minor allele frequencies did not differ between patients and the general population, or between sex, age at diagnosis, and diagnosis among patients. P369S/R408Q associated with significantly lower relapse-free survival in all patient analyses and in patients with solid tumours. Additionally, although the results were not significant, E148Q/L110P was likely to associate with worse relapse-free survival in patients with solid tumours. Discussion/Conclusion: Despite several limitations, this study provided the novel insight that the germline MEFV variants are associated with the clinical outcome of paediatric cancer.
DOI: 10.6084/m9.figshare.19740055.v1
title: Supplementary Material for: Effect of Germline MEFV polymorphisms on the prognosis of Japanese children with cancer: A regional analysis

description: Introduction: MEFV is the gene responsible for familial Mediterranean fever (FMF). It encodes pyrin, which controls inflammation; Besides, previous studies have reported that some germline MEFV variants were associated with tumour susceptibility. Materials and Methods: The loci of 12 germline MEFV variants were genotyped in 153 Japanese children with cancer, and the frequencies of these variants among the patient groups were compared with those in the general Japanese population. Additionally, the relationship between these variants and clinical data, including relapse and death, was investigated. Results: Minor allele frequencies did not differ between patients and the general population, or between sex, age at diagnosis, and diagnosis among patients. P369S/R408Q associated with significantly lower relapse-free survival in all patient analyses and in patients with solid tumours. Additionally, although the results were not significant, E148Q/L110P was likely to associate with worse relapse-free survival in patients with solid tumours. Discussion/Conclusion: Despite several limitations, this study provided the novel insight that the germline MEFV variants are associated with the clinical outcome of paediatric cancer.
DOI: 10.15129/898f337a-a43b-4690-8f30-c24a77297227
title: Data for: "Volumetric scalability of microfluidic and semi-batch silk nanoprecipitation methods"

description: Silk fibroin nanoprecipitation by organic desolvation in semi-batch and microfluidic formats provides promising bottom-up routes for manufacturing narrow polydispersity, spherical silk nanoparticles. The translation of silk nanoparticle production to pilot, clinical, and industrial scales can be aided through insight into the property drifts incited by nanoprecipitation scale-up and the identification of critical process parameters to maintain throughout scaling. Here, we report the reproducibility of silk nanoprecipitation on volumetric scale-up in low-shear, semi-batch systems and estimate the reproducibility of chip parallelization for volumetric scale-up in a high shear, staggered herringbone micromixer. We showed that silk precursor feeds pro-cessed in an unstirred semi-batch system (mixing time &gt; 120 s) displayed significant changes in the nanoparticle physicochemical and crystalline properties following a 12-fold increase in volumetric scale between 1.8 and 21.9 mL while the physicochemical properties stayed constant following a further 6-fold increase in scale to 138 mL. The nanoparticle physicochemical proper-ties showed greater reproducibility after a 6-fold volumetric scale-up when using lower mixing times of greater similarity (8.4 s and 29.4 s) with active stirring at 400 rpm, indicating that the bulk mixing time and average shear rate should be maintained during volumetric scale-up. Conversely, microfluidic manufacture showed high between-batch repeatability and between-chip reproducibility across four participants and microfluidic chips, thereby strengthening chip parallelization as a production strategy for silk nanoparticles at pilot, clinical, and industrial scales.
DOI: 10.6084/m9.figshare.19740097
title: Supplementary Material for: Effect of Germline MEFV polymorphisms on the prognosis of Japanese children with cancer: A regional analysis

description: Introduction: MEFV is the gene responsible for familial Mediterranean fever (FMF). It encodes pyrin, which controls inflammation; Besides, previous studies have reported that some germline MEFV variants were associated with tumour susceptibility. Materials and Methods: The loci of 12 germline MEFV variants were genotyped in 153 Japanese children with cancer, and the frequencies of these variants among the patient groups were compared with those in the general Japanese population. Additionally, the relationship between these variants and clinical data, including relapse and death, was investigated. Results: Minor allele frequencies did not differ between patients and the general population, or between sex, age at diagnosis, and diagnosis among patients. P369S/R408Q associated with significantly lower relapse-free survival in all patient analyses and in patients with solid tumours. Additionally, although the results were not significant, E148Q/L110P was likely to associate with worse relapse-free survival in patients with solid tumours. Discussion/Conclusion: Despite several limitations, this study provided the novel insight that the germline MEFV variants are associated with the clinical outcome of paediatric cancer.
DOI: 10.6084/m9.figshare.19740097.v1
title: Supplementary Material for: Effect of Germline MEFV polymorphisms on the prognosis of Japanese children with cancer: A regional analysis

description: Introduction: MEFV is the gene responsible for familial Mediterranean fever (FMF). It encodes pyrin, which controls inflammation; Besides, previous studies have reported that some germline MEFV variants were associated with tumour susceptibility. Materials and Methods: The loci of 12 germline MEFV variants were genotyped in 153 Japanese children with cancer, and the frequencies of these variants among the patient groups were compared with those in the general Japanese population. Additionally, the relationship between these variants and clinical data, including relapse and death, was investigated. Results: Minor allele frequencies did not differ between patients and the general population, or between sex, age at diagnosis, and diagnosis among patients. P369S/R408Q associated with significantly lower relapse-free survival in all patient analyses and in patients with solid tumours. Additionally, although the results were not significant, E148Q/L110P was likely to associate with worse relapse-free survival in patients with solid tumours. Discussion/Conclusion: Despite several limitations, this study provided the novel insight that the germline MEFV variants are associated with the clinical outcome of paediatric cancer.
DOI: 10.5281/zenodo.6536113
title: Crater cluster data

description: Crater cluster data and ArcMap files for crater clusters that formed after InSight landed on Mars.
DOI: 10.5281/zenodo.6536112
title: Crater cluster data

description: Crater cluster data and ArcMap files for crater clusters that formed after InSight landed on Mars.
DOI: 10.15139/s3/nyc2zg
title: Replication Data for: Does Public Financing Motivate Electoral Challengers?

description: These files contain replication information for the SPPQ paper entitled "Does Public Financing Motivate Electoral Challengers?"
DOI: 10.5287/bodleian:kze9jq9xd
title: Data for paper 'Modelling alternating current effects in a submerged arc furnace'
DOI: 10.5281/zenodo.6536052
title: Supplementary material for "Inception and evolution of La Corona lava tube system (Lanzarote, Canary Islands, Spain)"

description: Supplementary material for "Inception and evolution of La Corona lava tube system (Lanzarote, Canary Islands, Spain)" Geochemical data and coordinates of the samples; LIDAR, northern region of Lanzarote (resolution 5mt) 3D model data set (topography, tube, reconstructed paleo-topography)