cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/fg5y858j44
title: Cysteinylation of peroxiredoxin 2 upon incubation with BODIPY® FL L-Cystine

description: It has remained unknown how cells reduce cystine taken up from the extracellular space, which is a required step for further utilization of cysteine in key processes such as protein or glutathione synthesis. Here we show that the thioredoxin-related protein of 14 kDa (TRP14, encoded by TXNDC17) is the rate limiting enzyme for intracellular cystine reduction. When TRP14 is genetically knocked out, cysteine synthesis through the transsulfuration pathway becomes the major source of cysteine in human cells, and knockout of both pathways becomes lethal in C. elegans subjected to proteostatic stress. TRP14 can also reduce cysteinyl moieties on proteins, rescuing their activities as here shown with cysteinylated peroxiredoxin 2. Txndc17 knock-out mice were, surprisingly, protected in an acute pancreatitis model, concomitant with activation of Nrf2-driven antioxidant pathways and upregulation of transsulfuration. We conclude that TRP14 is the evolutionary conserved enzyme principally responsible for intracellular cystine reduction in C. elegans, mice and humans.			
Cysteinylation of recombinant human Prx2 (hPrx2)
Protein cysteinylation was achieved in vitro upon incubation of purified hPrx2 with BODIPY™ FL L-Cystine (Thermo Fisher, Massachusetts, USA). hPrx2 samples were pre-reduced with 1 mM DTT for 30 min at room temperature (RT), and then desalted using a Zeba™ Spin Desalting Column, 40 K MWKO, 0.5 mL (Thermo Fisher, Massachusetts, USA) and incubated with 100 µM BODIPY™ FL L-Cystine overnight at 4°C protected from light. After incubation, the remaining non-bound BODIPY™ FL L-Cystine was removed by desalting. Protein samples were loaded into a gel (Novex™ 4-20% Tris-Glycine, Invitrogen, California, USA) using non-reducing loading buffer (NuPAGE™LDS Sample Buffer, Invitrogen, California, USA) to conserve the mixed disulfide formed in the previous step. Electrophoretic separation was performed at a constant voltage of 200 V for 20-25 min while the gel was protected from light. Once resolved, the gel was developed in a UV transilluminator (ChemiDoc™ XRS+ Imaging System, Bio-Rad, California, USA) and Coomassie staining was later performed as loading control.
DOI: 10.17632/gn73tk2rc9
title: Stage-Wise Stochastic Deep Learning Inversion Framework for Subsurface Structure Identification

description: The codes for the paper "Stage-Wise Stochastic Deep Learning Inversion Framework for Subsurface Structure Identification"，the code of OCAAE and DOCRN is suitable for the 3D case, whereas it can be readily used for 2D subsurface structure by replacing the 3D operations with their 2D counterparts in network model files. such as OCAAE_models. As for the TP model, it can be used for both 2D and 3D cases, one should modify the "inputfile" and conditional file according to different problems, then run the "GEOST.exe" program to complete the simulation. The flow and transport responses data is too large to upload, one can generate this data set by TOUGHREACT or other transport simulators according to subsurface structures.
DOI: 10.17632/k7frchrnhr
title: Alexander & Lindell Empirical Studies of the Arts - Study 1 and Study 2 Datasets

description: Raw datasets for Study 1 and Study 2 reported in Alexander and Lindell's Empirical Studies of the Arts paper 'The Different Sides of Kings and Queens: Lateral Portrait Posing Biases Affect Perceptions of Western European Monarchs'.
DOI: 10.17632/m3bb4kd7fr
title: Intra-Bloc Tariffs and Preferential Margins Database

description: Data for the paper "Intra-Bloc Tariffs and Preferential Margins in Trade Agreements". We study how countries choose intra-bloc tariffs and preferential margins in Preferential Trade Agreements (PTAs). Our model indicates that countries should set systematically lower preferential margins when the bloc takes the form of a free trade area, relative to a customs union. Moreover, in customs unions (but not necessarily in free trade areas) preferential margins should increase with the supply of partner countries and decrease with the level of preferential imports. These relationships reflect, respectively, the internalization of political-economy goals within the bloc and the desire to curb trade diversion. Using a sample that covers most PTAs formed by Latin American countries in the 1990s, we find empirical support for each of those predictions. These findings rationalize why governments often keep intra-bloc duties strictlypositive. We show that this tends to worsen the welfare consequences of PTAs, and that requiring the elimination of internal tariffs would be socially desirable.
DOI: 10.17632/mwrkrmp3jn
title: Distributions of the denitrifying anaerobic methane oxidation process and microorganisms in natural environments: A review 

description: This database contained the relevant documents of the co-citation analysis (using CiteSpace) of literature on DAMO in natural environments. They include (1) the entire files for the CiteSpace project in "CiteSpace.zip" that allows repeating the CiteSpace analysis and (2) a complete list of the reference information from the co-citation analysis, including their cluster memberships, burstiness, citing frequency,  degree, centrality, and sigma values.  We obtained 354 citing articles from the Web of Science using keywords including “anaerobic oxidation of methane”, “anaerobic methane oxidation”, “nitrate-dependent anaerobic methane oxidation”, “nitrite-dependent anaerobic methane oxidation”, “denitrifying anaerobic methane oxidation”, “n-damo”, “damo”, “M. oxyfera”, “M. nitroreducens”, “NC10”, “ANME-2d”. The search results were refined using keywords “river”, “lake”, “reservoir”, “estuary”, “sea”, “marine”, “sediment”, “soil”, and “wetland”.  The co-citation analysis by CiteSpace 6.1 R3 with Pathfinder network scaling resulted in a co-citation network of 835 nodes. We used the results to (1) understand the underlying structure and the evolving patterns of the research in DAMO in natural environments by clustering the references, (2) identify key references of important clusters with citation bursts, and (3) predict the emerging hot topics by investigating the keyword burst history.
DOI: 10.17632/p4wxpp7fp4
title: MI Sanchez Aniorte Publications

description: Laser processing from Photovoltaics, semiconductor, microelectronics devices to driven proton acceleration. In this repository, there are some experimental studies demonstrating the effectiveness of the laser in a wide variety of applications
DOI: 10.17632/r7h84h2r5p
title: LINF_360068300

description: kinetoplast-associated protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/rdk5g69jnc
title: Supplementary data for Blewett et al: 'Effects of temperature and pH on archaeal membrane lipid distributions in freshwater wetlands'

description: S1: Primary Sites Info S2: Primary Sites - lipid data S3: PCA Loadings S4: Summary Peat GDGT data S5: GDGT data individual peats S6 Averaged GDGT incl. isomers
DOI: 10.17632/swx6c7nzdb
title: Data for: Structural variations within proteins can be as large as variations observed across their homologues

description: Dataset used in the study "Structural variations within proteins can be as large as variations observed across their homologues"
DOI: 10.17632/vvnfy37gyw
title: Data for: Dataset of metal(loid) concentrations recorded in the tissues of two fish species from Flag Boshielo Dam, South Africa

description: This dataset presents the weight and total length of Labeo rosae and Oreochromis mossambicus caught at Flag Boshielo Dam during winter and summer surveys in 2014. The dataset also contained metal(loid) concentrations recorded in the liver, gill and muscle of these fish species.
DOI: 10.17632/xtzkmjkgtr
title: Building energy optimization using Butterfly Optimization Algorithm (BOA): the source codes

description: The building model and source codes for building optimization using Butterfly Optimization Algorithm (BOA). 
Extract BOA folder and then add it to Matlab paths before run, so the software will know the BOA function. The building model, weather profile, and coupling codes are in base_code file.
Make sure EP has been installed in correct address: such as C:\EnergyPlusV8-5-0\EnergyPlus.exe or update the address at line 20 of obj.m file.
DOI: 10.17632/y3gg5b7h52
title: Prevalence and Incidence of Morphea: A Systematic Review - Supplementary Data

description: This is supplementary data for our systematic review titled: "Prevalence and Incidence of Morphea: A Systematic Review". This supplementary file consists of our research methodology and contains a table of the quality assessment of the studies included in this systematic review. The references for each study are also included.
DOI: 10.17632/z8f6bj7brk
title: Biochemical_variations_paper

description: INTERMITTENT ENDURANCE AND BIOCHEMICAL VARIATIONS DURING A SEASON IN ELITE PROFESSIONAL SOCCER PLAYERS
DOI: 10.17632/zp5drxxnz6
title: The position of Iranian left-wing parties regarding the White Revolution project in Iran

description: Academic studies have not given adequate attention to the history of political parties and organizations in Iran, despite Iran being an important neighboring country with significant sensitivity and importance to various regions in the Arab world.
Since the early 1960s, Iran has become entangled in significant political developments that have had a profound impact on its overall situation. It has witnessed important transformations, including the maturation of opposition political thought. This thought was able to move beyond theoretical ideological frameworks and engage in practical realities, opposing the authoritarian rule of the Pahlavi regime and foreign presence. The authorities attempted to establish party organizations loyal to them in order to limit the activities of opposition parties. However, these opposition parties were weak in the face of the dominance of the authorities and their security forces.
Opposition to the Pahlavi family's rule was not a futile endeavor aimed solely at overthrowing their rule. It was a prelude to new leadership that the Iranian street perceived as having a higher and more noble position. The feeling of reassurance towards these leadership figures generated a desire for comprehensive change that encompassed all aspects of the existing state.
The opposition was not characterized by a single ideological color. It consisted of various nationalist, secular, religious, materialistic communist, and Western liberal parties. However, the Islamic current dominated the Iranian political scene. In response, the authorities attempted to establish political parties loyal to them, known as the "power parties," in order to suppress public discontent. However, these power parties themselves contributed to the downfall of the regime due to their detachment from the Iranian street and the prevalence of administrative and financial corruption within their leadership ranks.
DOI: 10.17632/zr5nyv3n7c
title: The Effect of Emotional Stimuli on Cognitive Bias and Information Processing in Unmedicated Patients with Depression

description: The raw data for all analyses in the paper: "The Effect of Emotional Stimuli on Cognitive Bias and Information Processing in Unmedicated Patients with Depression"
DOI: 10.15468/dl.2yh6xd
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "RecordedBy is B. T. Gault",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 155 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000617-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/3z7s5znt3b
title: Fig 2

description:  Fig 2. Chromatographic profiles of plant extract
DOI: 10.17632/3zb6bjv9cc
title: Numerical data for the manuscript entitled "Surface-induced oxidation of Mn(II) and crystallization of MnOx on clay minerals"

description: Numerical data for the manuscript entitled "Surface-induced oxidation of Mn(II) and crystallization of MnOx on clay minerals"
DOI: 10.17632/47n3hsrpms
title: LINF_210019100

description: IQ calmodulin-binding motif containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/b5bpfw97cg
title: Insights into the response of coral biomineralisation to environmental change from aragonite precipitations in vitro

description: This dataset includes the data in Insights into the response of coral biomineralisation to environmental change from aragonite precipitations in vitro , submitted to Geochimica et Cosmochimica Acta.
The dataset includes Fig. S1 (showing different conditions tested for Raman spectroscopy) and tables of the seawater conditions and aragonite precipitation rates observed in experiments conducted with variable pHNBS and Ω with no biomolecule (Table S1) and with 2 mM of aspartic acid (Table S3), glutamic acid (Table S4) and glycine (Table S5), with variable [amino acid] (Table S2) and at different temperatures with and without aspartic acid (Table S6).
DOI: 10.17632/bkmyyt2h4y
title: Leriche, Bonnet et al., 2023

description: Raw data associated with Leriche, Bonnet et al 2023, 53BP1 interacts with the RNA primer from Okazaki fragments to support their processing during unperturbed DNA replication
DOI: 10.17632/c8stbpx5mz
title: Differential proteomic analysis of laser-microdissected penetration glands of avian schistosome cercariae with a focus on proteins involved in host invasion

description: The data are supplementary to the article "Differential proteomic analysis of laser-microdissected penetration glands of avian schistosome cercariae with a focus on proteins involved in host invasion" published in the International Journal for Parasitology 2022, vol. 52, issue 6, pp 343-358, https://doi.org/10.1016/j.ijpara.2021.12.003. The tables include mainly peptide identifications and annotations based on LC-MS/MS analyses of proteins contained in two separately isolated types of penetration glands of infectious larvae of the avian parasite Trichobilharzia szidati (Trematoda: Schistosomatidae) causing cercarial dermatitis in humans. Results of optimization experiments are also presented. Schistosome invasive stages, cercariae, leave their intermediate snail hosts, penetrate the skin of definitive hosts, and transform to schistosomula migrating to final location. During invasion, cercariae employ histolytic and other bioactive products of specialized holocrine secretory cells – postacetabular and circumacetabular penetration glands, the content of which is unsufficiently characterized. We present here the largest dataset known so far concerning the representation and localization of cercarial penetration gland proteins. We optimized the methods of sample processing with cercarial bodies (heads) first. Alizarin-pre-stained, chemically non-fixed samples provided optimal results of MS analyses, and enabled distinguishing PA and CA glands for laser microdissection. Peptidases of 5 catalytic types accounted for ca. 8 % and 6 % of reliably identified proteins in postacetabular and circumacetabular glands, respectively. Invadolysin, nardilysin, cathepsins B2 and L3, and an elastase 2b ortholog were the major gland endopeptidases. Two cystatins and a serpin were highly abundant peptidase inhibitors in the glands. While postacetabular glands generally had a rich enzymatic equipment, circumacetabular glands were conspicuously abundant in venom allergen-like proteins (PF00188 protein family members).
DOI: 10.17632/cfcztb2p3k
title: LINF_190013800

description: ATG8/AUT7/APG8/PAZ2 | Autophagy-related protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/d3hktgcvy7
title: Dataset on Insilco evaluation of Anti-oxidant Molecules of Talinum triangulare in Cerebral Ischemic Disease using Molecular Docking Studies 

description: Cerebral ischemia is the main cause of neurodegeneration defined by steady deterioration of central nervous system structure and functions. Talinum triangualre (water leaf) reported to be a potential treatment for cerebral ischemia due to its anti-oxidant activity. 23 ligand molecules of Talinum triangulare are retrieved from Pubchem database and subjected to docking studies. Further molecular docking studies are performed using Auto dock PyRx  software.  In the anti-oxidant activity by chosen ligands (catalase, Superoxide dismutase, Glutathione) the results encouraged us to recognize the interaction of this compound with the active site of selected antioxidant molecules. In silico measurement of Out of 23 candidates, four compounds Chicoric acid, Hesperidin, Rutin and Rosmatic acid displayed a higher binding affinity and least binding energy with the all the targets responsible for antioxidant activity. This In-silico technique can be used to predict a relationship between a small and a protein at the atomic level, in order to determine the actions of the small molecules in the active position of the target protein.
DOI: 10.17632/d7ttdszxyw
title: Do Latitudinal and bioclimatic gradients drive parasitism in Odonata?

description: This dataset provides supplementary material that supported the paper entitled "Do Latitudinal and bioclimatic gradients drive parasitism in Odonata?", submitted to the International Journal of Parasitology. Data consist in .nex files for phylogenetic trees of Odonata adapted from Waller, J.T., Svensson, E.I., 2017. Body size evolution in an old insect order: No evidence for Cope’s Rule in spite of fitness benefits of large size. Evolution (N. Y). 71, 2178–2193. https://doi.org/10.1111/evo.13302. These trees contain only those species for which we found enough data to conduct the analysis. We used Generalised Linear Mixed Models using Markov Chain Monte Carlo analysis with bioclimatic variables and data of parasite prevalence retrieved from literature. These data allowed us to build Bayesian phylogenetic comparative models to test if latitudinal and bioclimatic gradients drive parasitism in Odonata.
DOI: 10.17632/j58mf2wm9b
title: Data for: Updated CRUST 1.0 model with new data for Antarctica

description: This is a table with data about crustal structure of Antarctica incorporated in global CRUST 1.0 MODEL
DOI: 10.17632/j6mydyc6vc
title: MALEBEAUTYPREMIUM

description: trust game for male beauty premium effect (shaved vs light stubble vs full beard), with perceived attractiveness mediational effect.
DOI: 10.17632/m5gndgr557
title: Data for: Hoare et al. Melt composition and oxidation state control titanium isotope fractionation during magmatic differentiation

description: Isotope, Major and Trace element data used in Hoare et al. "Melt composition and oxidation state control titanium isotope fractionation during magmatic differentiation".
DOI: 10.17632/pys6cvt69w
title: Data for: Skarn metallogeny through zircon record: an example from the Daye Cu-Au-Fe-Mo district, eastern China

description: Table A.1. Major and trace elemental abundances of the ore-related intrusive rocks. Table A.2. LA-ICPMS zircon U–Pb data of the ore-related intrusions. Table A.3. Zircon trace element abundance, and calculated Ti-in-zircon temperature and f(O2) for the ore-related intrusive rocks. Table A.4 Hf isotopic data for the ore-related intrusive rocks.
DOI: 10.17632/r4r4m2vjvh
title: Chroma-Actions Dataset: Acoustic Images

description: Chromagram-based representation of audio extracted from videos. These representations were extracted from the UCF-101 Human Action Recognition dataset. Only videos with audio channels were considered.
DOI: 10.17632/z27d252sr9
title: Data for: Efficacy of Polyglactin 910 Coated with Triclosan (Vicryl Plus) Compared with Polyglactin 910 (Vicryl) Suture for Prevention of Surgical Site Infection following Dental Implant Surgery: A Single-Blind Randomized Clinical Trial

description: Raw data was added
DOI: 10.17632/4b7nyc3mt3
title: BT-Supplementary Files-KEGG-Functional abundance statistics-Enzymes-One case study involved in CW

description: Samples from CFCW and CW were collected for the further high-throughput sequencing analysis. High-throughput sequencing analysis was carried out by Majorbio Biotech Co., Ltd (Shanghai, China).The predictions of functional genes were conducted by using PICRUSt2 package and KEGG database. Data analysis were performed using the online platform supported by Majorbio Biotech Co., Ltd (Shanghai, China). Raw file about the functional annotations data of enzymes is stored in the Mendeley Data.
DOI: 10.17632/4d5yr7549k
title: Structural and electronic characteristic dataset of the water on basal surface the cis- and trans-vacant variety of a montmorillonite

description: The data given in the paper refer to the research study “Structure of bound water layer on montmorillonite surface: the role of trans- and cis-vacant sites”. They were obtained using CASTEP based on the density functional theory (DFT) applying a basis set of plane waves and PBE exchange-correlation functional. Van der Waals interactions were considered by the semi-empirical Grimm correction D2. The data include the optimized geometry and electronic properties of the balanced state of the non-hydrated cis- and trans-vacant variety of a Na-montmorillonite (MMT) and its state after the adsorption of water molecules. The data on hydration shells formed by the Na+ cation on the basal surface of MMT are also presented. Data files of the optimized crystal structures and electronic properties can be read by the public text editors.
DOI: 10.17632/76xydgnnzd
title: Data for: Aging seeds of weedy broomrapes and witchweeds lose sensitivity to strigolactones and DNA methylation

description: Data tables and analysis scripts: 
- 20230410_BrunPoehlWicke_SeedAging.R: R code for data analysis
- 20230410_data.xlsx: raw data table for germination and viability assays
- 20230410_ELISA.xlsx: raw data table of ELISA results
- 20230410_longevity_index.xlsx: Summary of calculated longevity indices per species and assay
DOI: 10.17632/7pjgcpt5t4
title: Descriptive cross-sectional survey involving 250 Ghanaian counselors was used to ascertain counselors’ willingness to serve sexual minorities

description: This data study use descriptive cross-sectional survey involving 250 Ghanaian counselors to ascertain counselors’ willingness to serve sexual minorities.
DOI: 10.17632/857299bfhs
title: Busova et al., 2023

description: ZooMS Data for Busova et al., 2023
DOI: 10.17632/85gstv9bks
title: Responses

description: These are qualitative interview transcripts of Girish, Jibran, Ashish, Rajat and Tejas, who went through their mandatory one-year coursework at Jagran Lakecity University, Bhopal, MP, India.
DOI: 10.17632/87dyjjp238
title: LINF_160015300

description: protein of unknown function - conserved Leishmania infantum (strain JPCM5)
DOI: 10.17632/89vs3n5nfd
title: Data for: Heterogeneity of nano-sized zeolite crystals

description: The folder contains images and EDX spectra of nano ZSM-5 crystals. The readme-file explains how data is structured and was acquired.
DOI: 10.17632/8mp3gffh25
title: Clay mineral data in the Pearl River Delta

description: Four cores (PRD-1, PRD-3, PRD-6,PRD-7) clay mineral data in the Pearl River Delta since the middle Holocene
DOI: 10.17632/9vccv4kmhm
title: Empirical Analysis Dataset of Labor Migration

description: Dataset for science article "Empirical Analysis Dataset of Labor Migration's: From China to USA" for Data in Brief journal
DOI: 10.17632/g6gm5hrf4g
title: Effect-Cues-and-Resistance-on-Mixture-Toxicity

description: Data used in 'Effects of predator cues and pesticide resistance on the toxicity of a (bio)pesticide mixture' in Pest Management Science. (Authors: Vienna Delnat, Lizanne Janssens & Robby Stoks; DOI: 10.1002/ps.5658) Abbreviations: CPF - chlorpyrifos, IA - independent action model, Bti - Bacillus thuringiensis israelensis, Cues - predator cues.
DOI: 10.17632/hjcfd479ns
title: Mineral zone images

description: Mineral zoning images of spiral slope flow concentrator under complex working conditions for the detection of small target tasks at fuzzy mineral zone separation points.