cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/824yvn82b5
title: A dataset on bacterio-, phyto- and zooplankton from an emerging periglacial lagoon in Svalbard, Arctic

description: Data on zooplankton, phytoplankton, and bacterioplankton from Arctic coastal lagoons are provided. The lagoon is located in the region of intense glacier melting, near Eidembukta Bay, on the Western Part of Spitsbergen (Svalbard Archipelago). This newly formed water body represents the new ecosystem, which is made up of elements that are presumably coming into the lagoon from the sea, the nearby tundra ponds and rivers, and the melting glacier. In deeper areas of the lagoon, upper and lower layers of water coming from the melting glacier and from the sea, respectively, form an extremely strong halocline. Apart from vertical gradient, the lagoon is structured horizontally as its areas vary in respect to their proximity to the melting glacier, and hence by their age.

The data presented in the repository provide actual snapshot for the diversity of aquatic organisms in novel post-glacial habitat. The data can be used for elucidating the processes of the emerging and evolution of newly formed aquatic ecosystems in the context of warming era.

The dataset includes the results of the analysis of the samples collected during two summer seasons (August 2022 and August 2023). Sampling was performed at 26 sampling sites, from different depths (above and below strong halocline) and different lagoon parts.

Following types of data are given in four Excel tables:

1. Table_1_Sampling sites.xlsx - map of the lagoon, brief characteristics of sampling sites: date of sampling, geographical coordinates, number and type of samples collected at each site. 
2. Table_2_Zooplankton.xlsx - list of lowest identified taxa of zooplankton, abundances of the taxa in the samples.
3. Table_3_Phytoplankton.xlsx - list of lowest identified taxa of phytoplankton, abundances of the taxa in the samples, biomass and carbon biomass of the taxa with categorisation by cell size.
4. Table_4_Bacterioplankton.xlsx - bacteria cell concentration and bacteria carbon biomass in the samples

The study was performed in framework of the EIDEMBUKTA project (“Formation of a novel coastal lagoon ecosystem following glacier retreat in Eidembukta, Svalbard Arctic“), funded by the Research Council of Lithuania (agreement number S-MIP-22-48) with logistical and technical support from the Institute of Oceanology of Polish Academy of Sciences.
DOI: 10.6084/m9.figshare.16859404.v4
title: Data of 3D Object Detection Combining Semantic and Geometric Features from Point Clouds

description: Data of 3D Object Detection Combining Semantic and Geometric Features from Point Clouds
DOI: 10.6084/m9.figshare.22494418.v1
title: Raw data files.zipCan you see the algae for the slime? Temporal patterns of biofilm food quality and quantity in lowland rivers

description: Raw dataAll coding and markdown, summary statistics for each stage of data manipulation for biofilm taxonomic composition and all raw data.
DOI: 10.6084/m9.figshare.23947284.v3
title: Data and codes for GSH_EL

description: Data and codes for the Geographical Spatial Heterogeneous Ensemble Learning (GSH-EL)
DOI: 10.6084/m9.figshare.28159556.v2
title: Local particle refinement in terramechanical simulations

description: <b>Supplementary material:</b>This upload is meant as supplementary material to the article "Local particle refinement in terramechanical simulations" (Local particle refinement in terramechanical simulations). It contains scripts to run both bed generation and track tests, as well as data from 200 already run simulations.<br><b>Abstract</b>The discrete element method (DEM) is a powerful tool for simulating granular soils, but its high computational demand often results in extended simulation times. While the effect of particle size has been extensively studied, the potential benefits of spatially scaling particle sizes are less explored. We systematically investigate a local particle refinement method’s impact on reducing computational effort while maintaining accuracy. We first conduct triaxial tests to verify that bulk mechanical properties are preserved under local particle refinement. Then, we perform pressure-sinkage and shear-displacement tests, comparing our method to control simulations with homogeneous particle size. We evaluate 36 different DEM beds with varying aggressiveness in particle refinement. Our results show that this approach, depending on refinement aggressiveness, can significantly reduce particle count by 2.3 to 25 times and simulation times by 3.1 to 43 times, with normalized errors ranging from 3.4% to 11% compared to high-resolution reference simulations. The approach maintains a high resolution at the soil surface, where interaction is high, while allowing larger particles below the surface. The results demonstrate that substantial computational savings can be achieved without significantly compromising simulation accuracy. This method can enhance the efficiency of DEM simulations in terramechanics applications.<br>
DOI: 10.6084/m9.figshare.9926639.v1
title: Raw_MS Data

description: Raw MS Data
DOI: 10.15468/dl.yak24c
title: Occurrence Download

description: A dataset listing the 1127261 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plantae"
 ]
}

 The dataset's 1127261 records were derived from 17770 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010082-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25592/uhhfdm.18248
title: Integrated Seurat data object from single-nucleus mRNA-sequencing of brown adipose tissue of mice in response to cold exposure

description: This Seurat object (v5.1) contains single-nucleus RNA-sequencing data from murine interscapular brown adipose tissue (BAT). The dataset comprises 36,611 nuclei from six samples representing two genotypes (ChREBP^flox/flox^ Ucp1-Cre negative [Cre-] and Ucp1-Cre positive [Cre+]) across three housing conditions: room temperature (22°C, RT), acute cold exposure (24 hours at 6°C, AC), and chronic cold exposure (10 days at 6°C, CC). BAT from 3-4 male mice (12-20 weeks old) was pooled per sample. Libraries were prepared using the 10X Genomics Chromium Single Cell V3.1 reagent kit and sequenced on an Illumina NovaSeq platform with paired-end 150 bp reads, targeting approximately 50,000 read pairs per nucleus.

Raw sequencing data were processed using Cell Ranger (v7.1.0) with alignment to the GRCm38 (mm10) reference genome. Quality control filtering excluded nuclei with &gt;15% mitochondrial reads, &gt;25,000 UMI counts, or &gt;5,000 detected genes, as well as genes detected in fewer than 3 cells. The six samples were integrated using the Harmony algorithm (v1.2.3). Clustering was performed using the top 30 principal components at resolution 0.8, yielding 21 annotated cell populations: seven adipocyte subtypes (basal brown, OXPHOS-high brown, white-like, lipogenic brown, endothelium-derived brown, stroma-derived brown, and contractile brown adipocytes), three stromal cell types, three endothelial cell types (capillary, arterial, venous), two muscle fiber types (fast and slow), myeloid cells (MonDC), smooth muscle cells, pericytes, lymphocytes, satellite glia cells, and Schwann cells. Key metadata columns include sample identifier (orig.ident), genotype, housing condition, cluster assignments (seurat_clusters), annotated cell type names (cell_type), and DoubletFinder classifications.
description: {"references": ["J. Behrens et al., 'Single-nucleus mRNA-sequencing reveals dynamics of lipogenic and thermogenic adipocyte populations in murine brown adipose tissue in response to cold exposure', Molecular Metabolism, vol. 101, p. 102252, Nov. 2025, doi: 10.1016/j.molmet.2025.102252."]}
DOI: 10.25592/uhhfdm.18247
title: Integrated Seurat data object from single-nucleus mRNA-sequencing of brown adipose tissue of mice in response to cold exposure

description: This Seurat object (v5.1) contains single-nucleus RNA-sequencing data from murine interscapular brown adipose tissue (BAT). The dataset comprises 36,611 nuclei from six samples representing two genotypes (ChREBP^flox/flox^ Ucp1-Cre negative [Cre-] and Ucp1-Cre positive [Cre+]) across three housing conditions: room temperature (22°C, RT), acute cold exposure (24 hours at 6°C, AC), and chronic cold exposure (10 days at 6°C, CC). BAT from 3-4 male mice (12-20 weeks old) was pooled per sample. Libraries were prepared using the 10X Genomics Chromium Single Cell V3.1 reagent kit and sequenced on an Illumina NovaSeq platform with paired-end 150 bp reads, targeting approximately 50,000 read pairs per nucleus.

Raw sequencing data were processed using Cell Ranger (v7.1.0) with alignment to the GRCm38 (mm10) reference genome. Quality control filtering excluded nuclei with &gt;15% mitochondrial reads, &gt;25,000 UMI counts, or &gt;5,000 detected genes, as well as genes detected in fewer than 3 cells. The six samples were integrated using the Harmony algorithm (v1.2.3). Clustering was performed using the top 30 principal components at resolution 0.8, yielding 21 annotated cell populations: seven adipocyte subtypes (basal brown, OXPHOS-high brown, white-like, lipogenic brown, endothelium-derived brown, stroma-derived brown, and contractile brown adipocytes), three stromal cell types, three endothelial cell types (capillary, arterial, venous), two muscle fiber types (fast and slow), myeloid cells (MonDC), smooth muscle cells, pericytes, lymphocytes, satellite glia cells, and Schwann cells. Key metadata columns include sample identifier (orig.ident), genotype, housing condition, cluster assignments (seurat_clusters), annotated cell type names (cell_type), and DoubletFinder classifications.
description: {"references": ["J. Behrens et al., 'Single-nucleus mRNA-sequencing reveals dynamics of lipogenic and thermogenic adipocyte populations in murine brown adipose tissue in response to cold exposure', Molecular Metabolism, vol. 101, p. 102252, Nov. 2025, doi: 10.1016/j.molmet.2025.102252."]}
DOI: 10.21979/n9/ccahah
title: Replication Data for: Flatbands from Bound States in the Continuum for Orbital Angular Momentum Localization

description: This repository contains the data and code used for the analyses presented in the preprint arXiv:2410.04040 (2024-10-05), https://doi.org/10.48550/arXiv.2410.04040
DOI: 10.6084/m9.figshare.31229032
title: <b>Plasma-</b><b>e</b><b>ngineered Oxygen Vacancies on NiFe Sulfide for Highly Efficient and Durable Oxygen Evolution Reaction</b>

description: The oxygen evolution reaction (OER) in water splitting is a critical bottleneck due to sluggish kinetics. To address this issue and accelerate the OER process, low-cost NiFe-based sulfidesexhibit great potential for large-scale applications; however, they suffer from insufficient active sites and poor stability under high current densities, which limits their practical utility. Herein, an O₂-plasma modification strategy was proposed to precisely regulate the surface oxygen vacancy(OV) concentration of Fe-doped Ni₃S₂ nanoblocks,thus fabricating the p-Fe-Ni₃S₂/NF catalyst.Notably, the surface OV concentration can be finely tailored by simply adjusting the plasma exposure duration, enabling controllable modulation of catalytic performance. In 1.0 M KOH, this catalyst required only 297 mV overpotential to reach the current density of 200 mA cm⁻², accompanied by a low Tafel slope of 54.87 mV dec⁻¹. Furthermore, it showed negligible activity decay after 100 h chronopotentiometric test at 200 mA cm⁻², exhibiting superior cycling stability. The enhanced performance originated from more exposed active sites, an expanded electrochemically active surface area and accelerated electron transfer kinetics induced by plasma modification. This work provides a new avenue for the rational design of high-performance OER electrocatalysts and advanced energy conversion materials.
DOI: 10.6084/m9.figshare.31229032.v1
title: <b>Plasma-</b><b>e</b><b>ngineered Oxygen Vacancies on NiFe Sulfide for Highly Efficient and Durable Oxygen Evolution Reaction</b>

description: The oxygen evolution reaction (OER) in water splitting is a critical bottleneck due to sluggish kinetics. To address this issue and accelerate the OER process, low-cost NiFe-based sulfidesexhibit great potential for large-scale applications; however, they suffer from insufficient active sites and poor stability under high current densities, which limits their practical utility. Herein, an O₂-plasma modification strategy was proposed to precisely regulate the surface oxygen vacancy(OV) concentration of Fe-doped Ni₃S₂ nanoblocks,thus fabricating the p-Fe-Ni₃S₂/NF catalyst.Notably, the surface OV concentration can be finely tailored by simply adjusting the plasma exposure duration, enabling controllable modulation of catalytic performance. In 1.0 M KOH, this catalyst required only 297 mV overpotential to reach the current density of 200 mA cm⁻², accompanied by a low Tafel slope of 54.87 mV dec⁻¹. Furthermore, it showed negligible activity decay after 100 h chronopotentiometric test at 200 mA cm⁻², exhibiting superior cycling stability. The enhanced performance originated from more exposed active sites, an expanded electrochemically active surface area and accelerated electron transfer kinetics induced by plasma modification. This work provides a new avenue for the rational design of high-performance OER electrocatalysts and advanced energy conversion materials.
DOI: 10.25934/pr00012537.0
title: Available datapackage for study 'A Multimodal Platform for Oral Screening of COVID-19'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.15468/dl.53fv5v
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Panama",
 "OccurrenceStatus is Present",
 "TaxonKey is Copelatus"
 ]
}

 The dataset includes 265 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000311-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qnszrq
title: Occurrence Download

description: A dataset containing 2539562 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 2539562 records from 289 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000279-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnb9ar
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eutatus seguini"
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000312-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25824/redu/hq6fdg
title: Cartas escritas pelas pessoas trans e travestis entrevistadas

description: Cartas redigidas pelas pessoas entrevistadas durante a coleta de dados para a pesquisa.
DOI: 10.5067/pkdfvvi44zcq
title: Weekly Snow Stake Array Measurements, Summit Station, Greenland, Version 1
DOI: 10.15468/dl.wenzbc
title: Occurrence Download

description: A dataset containing 33073 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leopardus pardalis"
 ]
}

 The dataset includes 33073 records from 471 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000316-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00012538.0
title: Available datapackage for study 'Detection and Automatic Privacy-Protected Contact Tracing System Designed for COVID-19'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.15468/dl.u7jswx
title: Occurrence Download

description: A dataset containing 407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Royal Ontario Museum - Invertebrate Zoology",
 "TaxonKey is Haemopis"
 ]
}

 The dataset includes 407 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000317-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18375460
title: Pro-regenerative fingerprints identified in a sub-population of adult mouse cardiomyocytes by integrative single-cell proteomics-Raw_data_1

description: Readme: Description of Zenodo links

 

Raw_data_1:

 

Figure1: Figure1 in adobe illustrator, png and pdf formats. Additional folder: containing the input data for figure 1d.

Figure2: Figure2 in adobe illustrator, png and pdf formats. Input_files folder: includes the input files for Metaboanalyst of the studied cases. Software folder: includes the softwares used for the analysis.

Figure3: Figure3 in adobe illustrator, png and pdf formats. AdditionaL folder: includes the differential expression data (volcano plot) and the reporter ion intensity information. Input_files folder: includes the input files for Metaboanalyst of the studied cases. Software folder: includes the software used for the analysis.

 

Figure_S1: FigureS1 and S1_1 in adobe illustrator, png and pdf formats. Software folder: includes the softwares used for the analysis.

 

Figure_S2: FigureS2 in adobe illustrator, png and pdf formats. Software folder: includes the software used for the analysis.

 

Figure_S3: Figure_S3 in adobe illustrator, png and pdf formats. Input_files folder: includes the input files for Metaboanalyst of the studied cases. Software folder: includes the softwares used for the analysis.
DOI: 10.5281/zenodo.18379849
title: Pro-regenerative fingerprints identified in a sub-population of adult mouse cardiomyocytes by integrative single-cell proteomics-Raw_data_1

description: Readme: Description of Zenodo links

 

Raw_data_1:

 

Figure1: Figure1 in adobe illustrator, png and pdf formats. Additional folder: containing the input data for figure 1d.

Figure2: Figure2 in adobe illustrator, png and pdf formats. Input_files folder: includes the input files for Metaboanalyst of the studied cases. Software folder: includes the softwares used for the analysis.

Figure3: Figure3 in adobe illustrator, png and pdf formats. AdditionaL folder: includes the differential expression data (volcano plot) and the reporter ion intensity information. Input_files folder: includes the input files for Metaboanalyst of the studied cases. Software folder: includes the software used for the analysis.

 

Figure_S1: FigureS1 and S1_1 in adobe illustrator, png and pdf formats. Software folder: includes the softwares used for the analysis.

 

Figure_S2: FigureS2 in adobe illustrator, png and pdf formats. Software folder: includes the software used for the analysis.

 

Figure_S3: Figure_S3 in adobe illustrator, png and pdf formats. Input_files folder: includes the input files for Metaboanalyst of the studied cases. Software folder: includes the softwares used for the analysis.
DOI: 10.5281/zenodo.18379639
title: Data for "Evaluating acidotropic dyes for detecting mixotrophy in protists: Insights from cultures and field communities"

description: For more information on how to use this data, see our preprint and GitHub

This database includes photos taken on an Attune CytPix imaging flow cytometer. The images were from events that had high red fluorescence and FSC. It compares organisms from the North East US Shelf (NES) and the California Current System (CCS). 

Additionally, fcs file examples for all cultures stained with acidotropic dyes in this study are included.
DOI: 10.17630/ddaa2777-4f1d-4ec5-94f8-8a028cf803e7
title: Mechanophotocatalysis: Towards a generalisable methodology for solvent-minimised light-driven organic synthesis reactions (thesis data)

description: The data files are embargoed until 19/12/2026
DOI: 10.5281/zenodo.18377303
title: Data for project: Muscle activity of the lower extremities during exergames with varying movement demands in older adults

description: The dataset contains individual EMG measurement reports for each participant, including the mean muscle activity values recorded during four different exergames. Measurements were obtained for the lower-leg muscles (tibialis anterior, soleus, and gastrocnemius medialis and lateralis) using surface EMG. The data include processed values for each game and participant, enabling analysis of muscle activation patterns across different exergame tasks. All measurements were collected using the Dividat Senso hardware and processed with MyoResearch software. This dataset supports reproducibility of the results reported in the associated study.
DOI: 10.5281/zenodo.18377304
title: Data for project: Muscle activity of the lower extremities during exergames with varying movement demands in older adults

description: The dataset contains individual EMG measurement reports for each participant, including the mean muscle activity values recorded during four different exergames. Measurements were obtained for the lower-leg muscles (tibialis anterior, soleus, and gastrocnemius medialis and lateralis) using surface EMG. The data include processed values for each game and participant, enabling analysis of muscle activation patterns across different exergame tasks. All measurements were collected using the Dividat Senso hardware and processed with MyoResearch software. This dataset supports reproducibility of the results reported in the associated study.
DOI: 10.6084/m9.figshare.31151281
title: Raw dataset for 5-day consecutive exercise study (Zhang et al., 2026)

description: Raw data for Zhang et al. 2026 manuscript, entitled "Neurophysiological and perceptual responses to consecutive days of exhaustive high-intensity interval cycling are dissociated".
DOI: 10.6084/m9.figshare.31151281.v1
title: Raw dataset for 5-day consecutive exercise study (Zhang et al., 2026)

description: Raw data for Zhang et al. 2026 manuscript, entitled "Neurophysiological and perceptual responses to consecutive days of exhaustive high-intensity interval cycling are dissociated".
DOI: 10.15468/dl.2x5bhj
title: Occurrence Download

description: A dataset containing 104820 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis latrans"
 ]
}

 The dataset includes 104820 records from 252 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000298-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18379816
title: AHe dataset for "Dominant glacial control on Plio-Pleistocene to recent exhumation of the Kyrgyz Range (Tien Shan)"

description: AHe dataset for the manuscript "Dominant glacial control on Plio-Pleistocene to recent exhumation of the Kyrgyz Range (Tien Shan)" submitted to Tectonics.