cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.k66mj7
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Motacilla flava Linnaeus, 1758)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017086-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.un2mz7
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is one of (AUS.7.62_1, AUS.7.44_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aedes vigilax (Skuse, 1889)",
 "Year 2000-2025"
 ]
}

 The dataset includes 35 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017089-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6ssf3
title: Occurrence Download

description: A dataset containing 2127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-97.92603 16.99565,-91.92379 16.99565,-91.92379 21.11233,-97.92603 21.11233,-97.92603 16.99565))",
 "HasGeospatialIssue is false",
 "TaxonKey is Ateles geoffroyi Kuhl, 1820"
 ]
}

 The dataset includes 2127 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017090-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pnq64b
title: Occurrence Download

description: A dataset containing 42992 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Motacilla flava Linnaeus, 1758)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 42992 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017091-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15581390
title: The legacy of past heatwaves on 'off-host' parasite stages: Reduced infection risk and costs in the Daphnia-Pasteuria system
DOI: 10.5281/zenodo.15581391
title: The legacy of past heatwaves on 'off-host' parasite stages: Reduced infection risk and costs in the Daphnia-Pasteuria system
DOI: 10.15468/dl.7p2kqe
title: Occurrence Download

description: A dataset containing 72067 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lachnospiraceae"
 ]
}

 The dataset includes 72067 records from 539 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017084-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28917242.v1
title: Two Simulated Datasets for the MCTOT Paper

description: The first dataset contains 20,000 samples, ordered by the gene variable, with all s-gene samples appearing first, followed by all n-gene samples. To construct replicates:The first replicate consists of the first 10 consecutive s-gene rows and the first 10 consecutive n-gene rows, stacked together to form a 20-sample block.The second replicate uses the next 10 s-gene rows and the next 10 n-gene rows, combined similarly.This process continues, pairing each successive block of 10 s-gene and 10 n-gene samples.Using this method, a total of 1,000 replicates (each with 20 samples) can be created from the dataset.The second dataset contains 24,000 samples, ordered by the dose variable, with all zero-dose samples appearing first, followed by all 240-dose samples. To construct replicates:The first replicate is formed by stacking the first 12 consecutive zero-dose rows with the first 12 consecutive 240-dose rows, creating a 24-sample block.The second replicate uses the next 12 zero-dose rows and the next 12 240-dose rows, combined in the same way.This process continues, pairing each successive block of 12 zero-dose and 12 240-dose samples.Following this method, 1,000 replicates—each containing 24 samples—can be generated from the dataset.
DOI: 10.6084/m9.figshare.3426518.v1
title: Accuracy of MALS in the detection of malaria.xlsx

description: This dataset allowed to assess the accuracy of a malaria diagnostic method which is based on the principle of multi-angle light scattering spectroscopy (MALS). <br>
DOI: 10.17632/2t739hy2td
title: The International Transmission of Local Economic Shocks Through Migrant Networks

description: Data replication materials for the paper "The International Transmission of Local Economic Shocks Through Migrant Networks"
DOI: 10.17632/8ssr6kptbx
title: Vehicle Make Image Dataset (VMID)

description: The vehicle make is the brand of the vehicle and mostly the name of the company manufacturing the vehicle. People easily recognize the vehicle by seeing the logo because of its unique design and is familiar to most people. This can help a machine do the same thing. By locating and recognizing the vehicle logo, it is possible for a computer system to classify the vehicle make by analyzing the differences in each logo and figuring out how to categorize them.

VMID was the collection of eleven vehicle logos in Thailand (Benz, Chevrolet, Ford, Honda, Isuzu, Mazda, MG, Mitsubishi, Nissan, Suzuki, and Toyota). The total number of images was 2,072.
DOI: 10.25387/g3.12563612.v3
title: Supplemental Material for Lechuga, et al., 2020

description: Supplementary Tables S1 to S6 and Supplementary Figures S1 to S4
DOI: 10.6084/m9.figshare.25197437.v1
title: Supplementary Material for the paper "<b>Machine learning algorithms for the evaluation of risk by tick-borne pathogens in Europe.</b>" by Estrada-Peña and de la Fuente (2024).

description: The files consist in:a compete GIS dataset (GeoPackage format) of hexagonal grids over Europe, with data on climate, landscape, vegetation features, expected distribution of four species of ticks and 162 species of vertebrates.A metadata for the GeoPackage, explaining the contents of each columnMaps of 11 species of vertebrates, as a proof of concept of the predictive abilities of Machine Learning Algorithms using the descriptive variables of the dataset.Scripts written in Orange data mining software (https://orangedatamining.com) to reproduce the demonstrative parts of the modeling.TO NOTE: THIS MATERIAL IS PROTECTED BY PUBLICATION COPYRIGHT. IT CAN BE USED AS FAR AS IT IS CITED.
DOI: 10.6084/m9.figshare.7666739.v1
title: Additional file 1: of Evolutionarily significant A-to-I RNA editing events originated through G-to-A mutations in primates

description: Table S1. Statistics of the deep sequencing data used in this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8115692.v2
title: Models to predict coral morphological shape variables from planar area and growth form

description: Models to predict shape variables for coral colonies using planar area and growth form.<br>Model objects, plots, summary stats, etc in R to predict shape variables.<br><br>Load RDS object into R and use the predict() function using growth form and planar area (in cm2)
DOI: 10.17632/d8gf3tvvc6
title: CUT & Tag of H3K18la in Y79（bw files）

description: CUT&Tag assay was completed as previous described. 1×105 cells were harvested and washed using wash buffer (1×protease inhibitor cocktail, 20 mM HEPES, 0.5 mM spermidine and 150 mM NaCl). Activated concanavalin A-coated magnetic beads (Bangs Laboratories, Inc., Fishers, IN, USA) were added and incubated at room temperature for 20min. The mix was resuspended with dig wash buffer consisting of 2-mM EDTA. The cells were incubated with an anti-H3K18la and IgG antibody (12-370, Millipore) overnight at 4°C. The secondary antibody was added to the cells and incubated at room temperature for about 1h, 100 μl of pA-Tn5 adapter complex (40 nM) was subsequently added and incubated at room temperature for 1h. After washing, Tagmentation buffer was added and incubated at 37°C for 1h. Proteinase K was added and incubate at 55°C for 15min, then at 70°C for 20min. DNA was then extracted with AMPure XP beads (Beckham Counter) and eluted. For PCR, PCR was performed with the following thermocycler programme: 72°C for 5 min, 98°C for 30 s, 14 cycles of 98°C for 10 s and 63°C for 30 s, 72°C for 1 min, and finally holding at 8°C. The size distribution of libraries was assessed using Agilent 4200 TapeStation analysis, and libraries were combined to ensure uniform representation, targeting a final concentration as recommended by the manufacturer. Paired-end Illumina sequencing was conducted following the manufacturer’s guidelines. Alignment of paired-end reads was performed using Bowtie2 version 2.2. Peak calling was conducted using the following parameters: macs2 callpeak - t input_file - p 1e-5 - f BEDPE/BED (for Paired End vs. Single End sequencing data) - keep-dup all - n out_name. The criteria of fold change &gt;2.0 (log2 ratio value &gt; 1) and P value &lt; 0.05 were employed to identify differentially accessible peaks.
DOI: 10.6084/m9.figshare.26403022.v1
title: CyTOF of mouse liver transplantation samples from FGF21 KO and wild-type mice

description: To elucidate the underlying mechanism of inflammatory injury driven by FGF21 deficiency, we performed CyTOF of mouse liver transplantation samples from FGF21 KO and wild-type mice. Transplanted livers from 8 mouses (n = 4/group) were analysed by CyTOF. CyTOF analyses were performed by PLTTech Inc. (Hangzhou, China). Briefly, mouse liver tissue was dissociated into single cells using DNase, collagenase IV and hyaluronidase (Sigma-Aldrich, St. Louis, MO, USA). Immune cells were enriched using Percoll density gradient media (Sigma-Aldrich), and red blood cells were removed using ACK Lysing Buffer (Sigma-Aldrich). Qualified samples were blocked and stained for 30 min with a panel of 42 antibodies (Supplementary Table 1), followed by fixation overnight. Permeabilization buffer was applied, and the cells were incubated in an intracellular antibody mix. The cells were rinsed, and the signals were detected using a CyTOF system (Helios, Fluidigm, CA, USA). The types of immune cells were identified via nonlinear dimensionality reduction [t-distributed stochastic neighbor embedding (tSNE)], followed by density clustering.
DOI: 10.6084/m9.figshare.28138319.v1
title: SullmentaryMaterial 1472885.XLSX

description: The data set is an outcome of an empirical research The relationship between work-life balance and psychological well-being: an empirical study of metro rail travelers working in the information technology sector. Frontiers in Psychology Journal.
DOI: 10.6084/m9.figshare.24201129.v7
title: How Does ChatGPT-3.5 Compare with Developers When Answering Questions and Revising Software?

description: This folder contains all the experiment results and programs for our research to investigate how ChatGPT3.5 performs compared to Developers when answering technical questions and revising software based on maintenance request.
DOI: 10.6084/m9.figshare.25974886.v9
title: <b>Into the ML-universe: An Improved Classification and Characterization of Machine-Learning Projects</b>

description: Replication package related to the paper "<b>Into the ML-universe: An Improved Classification and Characterization of Machine-Learning Projects</b>" which includes the results of the various steps of our study with related plots, and the tool we built to classify our projects.
DOI: 10.6084/m9.figshare.27125385.v1
title: <b>Supplementary information</b>-A review of mangrove degradation assessment using remote sensing: advances, challenges, and opportunities

description: This spreadsheet contains data for a review paper on remote sensing-based mangrove degradation.Title: A review of mangrove degradation assessment using remote sensing: advances, challenges, and opportunitiesJournal: GIScience & Remote Sensing<br>DOI: 10.1080/15481603.2025.2491920Author: Shan WEI, Hongsheng Zhang, Jing Ling
DOI: 10.6084/m9.figshare.9927542.v1
title: Salinity and stable oxygen isotope relationship in the Southwestern Atlantic: constraints to paleoclimate reconstructions

description: Abstract: Stable isotopes have been widely used in the literature both to discuss current ocean circulation processes, as well as to reconstitute paleoceanographic parameters. The distribution of oxygen and deuterium stable isotopes in seawater (δ18Osw and δDsw) at the Western Tropical South Atlantic border was investigated to better understand the main fractionation processes of these isotopes and establish a regional salinity and δ18Osw relation to improve the paleoceanographic knowledge in the region. This study was conducted during a quasi-synoptic oceanographic cruise in which 98 discrete seawater samples were collected in the core of the main water masses for stable isotope analysis. A strong correlation between δ18Osw and δD was found, which made it possible to extrapolate the results for δ18Osw to δD. Although it was not possible to distinguish the water masses based only on their isotopic signatures, the water masses had a strong salinity and δ18Osw relation, and compared with previous studies, a seasonal pattern was observed. Paleosalinity differences of up to 0.2 psu between Summer and Winter are reported. Considering the limitations of the current techniques to seasonally separate the samples for the paleoceanographic studies, an intermediate Mixing Line for the Tropical South Atlantic (SSS = 1.942* δ18Osw + 34.56) was proposed to reduce the estimated errors associated with these seasonal variations.
DOI: 10.15131/shef.data.4232627.v1
title: Datasets for 'London Lives: Poverty, Crime and the Making of a Modern City, 1690-1800'

description: The sixteen datasets contain data collected from London archives, printed primary sources, and the Old Bailey Proceedings Online. They form the background data to graphs and tables published in the book, London Lives: Poverty, Crime and the Making of a Modern City, 1690-1800 (Cambridge University Press, 2015).
DOI: 10.6084/m9.figshare.17076290.v1
title: Global Coral Bleaching Database

description: Global coral bleaching database in SQLite format.
DOI: 10.6084/m9.figshare.2062467.v1
title: Digg_2009 social news votes and graph

description: Digg2009 data set contains data about stories promoted to Digg's front page over a period of a month in 2009. For each story, we collected the list of all Digg users who have voted for the story up to the time of data collection, and the time stamp of each vote. We also retrieved the voters' friendship links. The semantics of the friendship links are as follows <br>user_id --&gt; friend_id <br><br>means that user_id is watching the activities of (is a fan of) friend_id. User ids have been anonymized, but are unique in the data set: a user with a specific id in the friendship links table and a user with the same id in the votes table correspond to the same actual user.The data is in zipped csv files that are password protected. The password is <i>digg2009_user</i>.VotesTable <b>digg_votes</b> contains 3,018,197 votes on 3553 popular stories made by 139,409 distinct users. The first vote is from the story's submitter. <br>Schema of the tablevote_date: Unix time stamp of the votevoter_id: anonymized unique id of the voterstory_id: anonymized unique id of the storyFriendship linksTable <b>digg_friends</b> contains 1,731,658 friendship links of 71,367 distinct users. Voters who do not appear in the table did not specify any friends at the time data was collected.<br>Schema of the digg_friends tablemutual: indicated whether the link represents a mutual friend relation (1) or not (0)friend_date: Unix time stamp of when the friendship link was createduser_id: anonymized unique id of a userfriend_id: anonymized unique id of a userThis data is made available to the community for research purposes only. If you use the data in a publication, please cite: <br>Hogg, T. and Lerman, K. (2012) Social Dynamics of Digg. <i>EPJ Data Science</i>1(5). doi:10.1140/epjds5
DOI: 10.6084/m9.figshare.25676940.v1
title: Postpartum depression

description: Postpartum depression
DOI: 10.6084/m9.figshare.28547321.v1
title: Supplementary Material for: Precision Treatment of IgA Nephropathy Based on a New Framework: Angiorenal Protection, Immunity Inhibition, B-Cell/Plasma-Cell Modulation, and Complement Inhibition

description: Medicine
DOI: 10.6084/m9.figshare.29145206.v1
title: Validation Report

description: In the information age, global scientific research results have been shared like never before, and the huge amount of data generated by researchers around the world is centrally stored in several public databases, such as UK Biobank, FinnGen, GWAS Catalog, IEU OpenGWAS, etc. However, the current utilization efficiency of these databases is obviously insufficient.In this paper, the Genome-wide Precision Causal Network Translational Medical Paradigm (GPCN-TMP) is proposed for the first time. The paradigm makes full use of global publicly available genomic and multi-omics databases, with the core approach involving Mendelian Randomization (MR) and Generalized Summary-data-based Mendelian Randomization (GSMR) to discover a large number of potential causal relationships through automated large-scale data-driven analysis and rigorous statistical validation.In this paper, we have conducted a comprehensive validation and demonstration by applying the GPCN-TMP theory using the cystatin family as an example. Without any predetermined research directions, we applied self-developed large-scale automated MR and GSMR batch analysis codes to extract relevant data from global public databases, perform preliminary causal network analysis and obtain a large number of potential relationship results. Subsequent cross-validation with existing literature fully demonstrated the scientific validity and feasibility of the GPCN-TMP paradigm.<br>
DOI: 10.6084/m9.figshare.9250634.v2
title: data

description: Data includes full and sparse reconstruction of mouse and (circular and vessel-like) phantoms imaged with optoacoustic setup.<br>
DOI: 10.6084/m9.figshare.25295545.v1
title: City-level final energy consumption dataset in China

description: The role of China is increasingly pivotal in climate change mitigation, and the formulation of energy conservation and emission reduction policies requires city-level information. The effectiveness of national policy implementation is contingent upon the support and involvement of local governments. Accurate data on final energy consumption is vital to formulate and implement city-level energy transitions and energy conservation and emission reduction policies. However, there is a dearth of data sources pertaining to China’s city-level final energy consumption. To address these gaps, we developed computational modeling techniques along with top-down and downscaling methods to estimate China’s city-level final energy consumption. In this way, we compiled a final energy consumption inventory for 327 Chinese cities from 2005 to 2021, covering seven economic sectors, 30 fossil fuels, and four clean power sources. Moreover, we discussed the validity of the estimation results from multiple perspectives to enhance estimation accuracy. This dataset can be utilized for analysis in various cutting-edge research fields such as energy transition dynamics, transition risk management strategies, and policy formulation processes.
DOI: 10.6084/m9.figshare.27605046.v1
title: Partial Quantile Tensor Regression

description: Tensors, characterized as multidimensional arrays, are frequently encountered in modern scientific studies. Quantile regression has the unique capacity to explore how a tensor covariate influences different segments of the response distribution. In this work, we propose a partial quantile tensor regression (PQTR) framework, which novelly applies the core principle of the partial least squares technique to achieve effective dimension reduction for quantile regression with a tensor covariate. The proposed PQTR algorithm is computationally efficient and scalable to a large tensor covariate. Moreover, we uncover an appealing latent variable model representation for the PQTR algorithm, justifying a simple population interpretation of the resulting estimator. We further investigate the connection of the PQTR procedure with an envelope quantile tensor regression (EQTR) model, which defines a general set of sparsity conditions tailored to quantile tensor regression. We prove the root-n consistency of the PQTR estimator under the EQTR model, and demonstrate its superior finite-sample performance compared to benchmark methods through simulation studies. We demonstrate the practical utility of the proposed method via an application to a neuroimaging study of post traumatic stress disorder (PTSD). Results derived from the proposed method are more neurobiologically meaningful and interpretable as compared to those from existing methods.
DOI: 10.17632/c37wnbbd3c
title: Dataset A: 186 digital images of MGG-stained blood smears from five patients with hereditary spherocytosis

description: This dataset contains 186 digital images of May Grünwald-Giemsa (MGG)-stained peripheral blood (PB) smears. They were compiled during the daily work in the Core Laboratory at the Hospital Clínic of Barcelona from five patients with the diagnosis of hereditary spherocytosis. The digital images were acquired using a microscope with 1,000x magnification (Olympus BX43) and a digital camera (Olympus DP73). The images in the dataset are of format JPG (RGB, 2,400 x 1,800 pixels).
DOI: 10.6084/m9.figshare.21354180.v1
title: Database for Research Article "Affective Attitudes in the Face of the COVID-19 Pandemic: The Dynamics of Negative Emotions and a Sense of Threat in Poles in the First Wave of the Pandemic"

description: Database for Research Article "Affective Attitudes in the Face of the COVID-19 Pandemic: The Dynamics of Negative Emotions and a Sense of Threat in Poles in the First Wave of the Pandemic", Authors: Anna Szuster, Miroslawa Huflejt-Łukasik, Dorota Karwowska, Maciej Pastwa, Zuzanna Laszczkowska and Kamil K. Imbir
DOI: 10.6084/m9.figshare.25118063.v2
title: City-level livestock methane emissions in China from 2010 to 2020

description: This is the data file for review of the manuscript "City-level livestock methane emissions in China from 2010 to 2020" submitted to Scientific Data.<br>
DOI: 10.6084/m9.figshare.28644551.v1
title: Job_Scheduling_Dataset.csv

description: demonstrating the effectiveness of combinatorial optimization in scheduling problems, contributing to improved decision-making processes in operations research.