cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xjv97t
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argyreia nervosa",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051771-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.90807
title: Rhone river, Beaujeu, daily flux rate of particulate organic matter 1987-2001
DOI: 10.1594/pangaea.905473
title: The Southern Ocean diatom Chaetoceros debilis is limited in growth by iron and manganese together

description: In some parts of the Southern Ocean (SO), even though low surface concentrations of iron (Fe) and manganese (Mn) indicate FeMn co-limitation, we still lack an understanding on how Mn and Fe availability influences SO phytoplankton ecophysiology. Therefore, this study investigated the effects of Fe and Mn limitation alone as well as their combination on growth, photophysiology and particulate organic carbon production of the bloom-forming Antarctic diatom Chaetoceros debilis. Our results clearly show that growth, photochemical efficiency and carbon production of C. debilis were co-limited by Fe and Mn as highest values were only reached when both nutrients were provided. Even though Mn-deficient cells had higher photochemical efficiencies than Fe-limited ones, they, however, displayed similar low growth and POC production rates, indicating that Mn limitation alone drastically impeded the cell's performance. These results demonstrate that similar to low Fe concentrations, low Mn availability inhibits growth and carbon production of C. debilis. As a result from different species-specific trace metal requirements, SO phytoplankton species distribution and productivity may therefore not solely depend on the input of Fe alone, but also critically on Mn acting together as important drivers of SO phytoplankton ecology and biogeochemistry.
description: Supplement to: Pausch, Franziska; Bischof, Kai; Trimborn, Scarlett; Jesus, Bruno (2019): Iron and manganese co-limit growth of the Southern Ocean diatom Chaetoceros debilis. PLoS ONE, 14(9), e0221959
DOI: 10.1594/pangaea.930305
title: Seawater carbonate chemistry and ROS and EPS production of the Trichodesmium erythraeum

description: The diazotrophic cyanobacterium Trichodesmium is thought to be a major contributor to the new N in the parts of the oligotrophic, subtropical and tropical oceans. In this study physiological and biochemical methods and transcriptome sequencing were used to investigate the influences of ocean acidification (OA) on Trichodesmium erythraeum (T. erythraeum). We presented evidence that OA caused by CO2 slowed the growth rate and physiological activity of T. erythraeum. OA led to reduced development of proportion of the vegetative cells into diazocytes which included up‐regulated genes of nitrogen fixation. Reactive oxygen species (ROS) accumulation was increased due to the disruption of photosynthetic electron transport and decrease in antioxidant enzyme activities under acidified conditions. This study showed that OA increased the amounts of (exopolysaccharides) EPS in T. erythraeum, and the key genes of ribose‐5‐phosphate (R5P) and glycosyltransferases (Tery_3818) were up‐regulated. These results provide new insight into how ROS and EPS of T. erythraeum increase in an acidified future ocean to cope with OA‐imposed stress.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-04-07.
DOI: 10.1594/pangaea.101677
title: Organic carbon flux in the Bransfield Strait area, Fruela95
DOI: 10.1594/pangaea.955862
title: Oxcal input used to create an age model of the stalagmite SIB-4 from Sibaki Cave, Southwestern Iran

description: An interpolated age model with 68% and 95% confidence ranges was produced using OxCal version 4.4 (doi:10.1594/PANGAEA.955839). The age model uses a Poisson process deposition model, with stalagmite vertical growth rate constrained using model inputs k0= 0.1 mm-1 and log10(k/k0) = U (-2, 2) (Bronk Ramsey, 2008, 2009; Bronk Ramsey and Lee, 2013).
DOI: 10.1594/pangaea.763286
title: Seawater carbonate chemistry, growth rate and morphology of Calcidiscus leptoporus (RCC1135) during experiments, 2011

description: The coccolithophore Calcidiscus leptoporus (strain RCC1135) was grown in dilute batch culture at CO2 levels ranging from ~200 to ~1600 µatm. Increasing CO2 concentration led to an increased percentage of malformed coccoliths and eventually (at ~1500 µatm CO2) to aggregation of cells. Carbonate chemistry of natural seawater was manipulated in three ways: first, addition of acid; second, addition of a HCO3/CO3 solution; and third, addition of both acid and HCO3/CO3 solution. The data set allowed the disentangling of putative effects of the different parameters of the carbonate system. It is concluded that CO2 is the parameter of the carbonate system which causes both aberrant coccolithogenesis and aggregation of cells.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Langer, Gerald; Bode, Maya (2011): CO2 mediation of adverse effects of seawater acidification in Calcidiscus leptoporus. Geochemistry, Geophysics, Geosystems, 12(5), Q05001
DOI: 10.1594/pangaea.843600
title: Solar UV irradiances modulate effects of ocean acidification on the Coccolithophorid Emiliania huxleyi

description: Emiliania huxleyi, the most abundant coccolithophorid in the oceans, is naturally exposed to solar UV radiation (UVR, 280-400 nm) in addition to photosynthetically active radiation (PAR). We investigated the physiological responses of E. huxleyi to the present day and elevated CO2 (390 vs 1000 µatm; with pH(NBS) 8.20 vs 7.86) under indoor constant PAR and fluctuating solar radiation with or without UVR. Enrichment of CO2 stimulated the production rate of particulate organic carbon (POC) under constant PAR, but led to unchanged POC production under incident fluctuating solar radiation. The production rates of particulate inorganic carbon (PIC) as well as PIC/POC ratios were reduced under the elevated CO2, ocean acidification (OA) condition, regardless of PAR levels, and the presence of UVR. However, moderate levels of UVR increased PIC production rates and PIC/POC ratios. OA treatment interacted with UVR to influence the alga's physiological performance, leading to reduced specific growth rate in the presence of UVA (315-400 nm) and decreased quantum yield, along with enhanced nonphotochemical quenching, with addition of UVB (280-315 nm). The results clearly indicate that UV radiation needs to be invoked as a key stressor when considering the impacts of ocean acidification on E. huxleyi.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Xu, Kai; Gao, Kunshan (2015): Solar UV Irradiances Modulate Effects of Ocean Acidification on the Coccolithophorid Emiliania huxleyi. Photochemistry and Photobiology, 91(1), 92-101
DOI: 10.1594/pangaea.957342
title: Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium

description: Growth of the prominent nitrogen-fixing cyanobacterium Trichodesmium is often limited by phosphorus availability in the ocean. How nitrogen fixation by phosphorus-limited Trichodesmium may respond to ocean acidification remains poorly understood. Here, we use phosphate-limited chemostat experiments to show that acidification enhanced phosphorus demands and decreased phosphorus-specific nitrogen fixation rates in Trichodesmium. The increased phosphorus requirements were attributed primarily to elevated cellular polyphosphate contents, likely for maintaining cytosolic pH homeostasis in response to acidification. Alongside the accumulation of polyphosphate, decreased NADP(H):NAD(H) ratios and impaired chlorophyll synthesis and energy production were observed under acidified conditions. Consequently, the negative effects of acidification were amplified compared to those demonstrated previously under phosphorus sufficiency. Estimating the potential implications of this finding, using outputs from the Community Earth System Model, predicts that acidification and dissolved inorganic and organic phosphorus stress could synergistically cause an appreciable decrease in global Trichodesmium nitrogen fixation by 2100.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-07.
DOI: 10.1594/pangaea.778469
title: Seawater carbonate chemistry, nutrients, chlorophyll, and growth rate of Phaeocystis globosa (strain Pg G''A'') during experiments, 2011

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
DOI: 10.1594/pangaea.867566
title: The modulating effect of light intensity on the response of the coccolithophore Gephyrocapsa oceanica to ocean acidification

description: Global change leads to a multitude of simultaneous modifications in the marine realm among which shoaling of the upper mixed layer, leading to enhanced surface layer light intensities, as well as increased carbon dioxide (CO2) concentration are some of the most critical environmental alterations for phytoplankton. In this study, we investigated the responses of growth, photosynthetic carbon fixation and calcification of the coccolithophore Gephyrocapsa oceanica to elevated inline image (51 Pa, 105 Pa, and 152 Pa) (1 Pa = 10 µatm) at a variety of light intensities (50-800 µmol photons/m**2/s). By fitting the light response curve, our results showed that rising inline image reduced the maximum rates for growth, photosynthetic carbon fixation and calcification. Increasing light intensity enhanced the sensitivity of these rate responses to inline image, and shifted the inline image optima toward lower levels. Combining the results of this and a previous study (Sett et al. 2014) on the same strain indicates that both limiting low inline image and inhibiting high inline image levels (this study) induce similar responses, reducing growth, carbon fixation and calcification rates of G. oceanica. At limiting low light intensities the inline image optima for maximum growth, carbon fixation and calcification are shifted toward higher levels. Interacting effects of simultaneously occurring environmental changes, such as increasing light intensity and ocean acidification, need to be considered when trying to assess metabolic rates of marine phytoplankton under future ocean scenarios.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-11-03.
description: Supplement to: Zhang, Yong; Bach, Lennart Thomas; Schulz, Kai Georg; Riebesell, Ulf (2015): The modulating effect of light intensity on the response of the coccolithophore Gephyrocapsa oceanica to ocean acidification. Limnology and Oceanography, 60(6), 2145-2157
DOI: 10.1594/pangaea.890637
title: Seawater carbonate chemistry and Southern Ocean phytoplankton community characterization and iron uptake

description: The rise in anthropogenic CO2 and the associated ocean acidification (OA) will change trace metal solubility and speciation, potentially altering Southern Ocean (SO) phytoplankton productivity and species composition. As iron (Fe) sources are important determinants of Fe bioavailability, we assessed the effect of Fe-laden dust versus inorganic Fe (FeCl3) enrichment under ambient and high pCO2 levels (390 and 900 μatm) in a naturally Fe-limited SO phytoplankton community. Despite similar Fe chemical speciation and net particulate organic carbon (POC) production rates, CO2-dependent species shifts were controlled by Fe sources. Final phytoplankton communities of both control and dust treatments were dominated by the same species, with an OA-dependent shift from the diatom Pseudo nitzschia prolongatoides towards the prymnesiophyte Phaeocystis antarctica. Addition of FeCl3 resulted in high abundances of Nitzschia lecointei and Chaetoceros neogracilis under ambient and high pCO2, respectively. These findings reveal that both the characterization of the phytoplankton community at the species level and the use of natural Fe sources are essential for a realistic projection of the biological carbon pump in the Fe-limited pelagic SO under OA. As dust deposition represents a more realistic scenario for the Fe-limited pelagic SO under OA, unaffected net POC production and dominance of P. antarctica can potentially weaken the export of carbon and silica in the future.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-23.
description: Supplement to: Trimborn, Scarlett; Brenneis, Tina; Hoppe, Clara Jule Marie; Laglera, Luis Miguel; Norman, Louiza; Santos-Echeandía, Juan; Völkner, Christian; Wolf-Gladrow, Dieter A; Hassler, Christel S (2017): Iron sources alter the response of Southern Ocean phytoplankton to ocean acidification. Marine Ecology Progress Series, 578, 35-50
DOI: 10.1594/pangaea.914289
title: Seawater carbonate chemistry and photo-physiological fitness, growth and carbon production of the Antarctic cryptophyte Geminigera cryophila

description: Ecophysiological studies on Antarctic cryptophytes to assess whether climatic changes such as ocean acidification and enhanced stratification affect their growth in Antarctic coastal waters in the future are lacking so far. This is the first study that investigates the combined effects of the increasing availability of pCO2 (400 and 1000 μatm) and irradiance (20, 200 and 500 μmol photons m-2 s-1) on growth, elemental composition and photo-physiology of the Antarctic cryptophyte Geminigera cryophila. Under ambient pCO2, this species was characterized by a pronounced sensitivity to increasing irradiance with complete growth inhibition at the highest light intensity. Interestingly, when grown under high pCO2 this negative light effect vanished, and it reached the highest rates of growth and particulate organic carbon production at the highest irradiance compared to the other tested experimental conditions. Our results for G. cryophila reveal beneficial effects of ocean acidification in conjunction with enhanced irradiance on growth and photosynthesis. Hence, cryptophytes such as G. cryophila may be potential winners of climate change, potentially thriving better in more stratified and acidic coastal waters and contributing in higher abundance to future phytoplankton assemblages of coastal Antarctic waters.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-18.
DOI: 10.1594/pangaea.920020
title: Seawater carbonate chemistry and growth rate, particulate organic (POC) and inorganic (PIC) carbon quotas of the coccolithophorid Emiliania huxleyi

description: Continuous accumulation of fossil CO2 in the atmosphere and increasingly dissolved CO2 in seawater leads to ocean acidification (OA), which is known to affect phytoplankton physiology directly and/or indirectly. Since increasing attention has been paid to the effects of OA under the influences of multiple drivers, in this study, we investigated effects of elevated CO2 concentration under different levels of light and nutrients on growth rate, particulate organic (POC) and inorganic (PIC) carbon quotas of the coccolithophorid Emiliania huxleyi. We found that OA treatment (pH 7.84, CO2 = 920 μatm) reduced the maximum growth rate at all levels of the nutrients tested, and exacerbated photo-inhibition of growth rate under reduced availability of phosphate (from 10.5 to 0.4 μmol/l). Low nutrient levels, especially lower nitrate concentration (8.8 μmol/l compared with 101 μmol/l), decreased maximum growth rates. Nevertheless, the reduced levels of nutrients increased the maximum PIC production rate. Decreased availability of nutrients influenced growth, POC and PIC quotas more than changes in CO2 concentrations. Our results suggest that reduced nutrient availability due to reduced upward advective supply because of ocean warming may partially counteract the negative effects of OA on calcification of the coccolithophorid.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-07-07.
DOI: 10.1594/pangaea.943573
title: Acidification and iron limitation effects on the photophysiology, growth, carbon production, and cellular pigment and trace metal quotas of the Antarctic phytoplankton Geminigera cryophila and Pseudo‐nitzschia subcurvata

description: Ecophysiological studies looking at the combined effects of ocean acidification (OA) and iron (Fe) availability on Southern Ocean (SO) phytoplankton are still limited. To gain a better mechanistic understanding of how the two ecologically important SO phytoplankton groups cope with OA and Fe limitation, we conducted laboratory incubation experiments on the Antarctic cryptophyte Geminigera cryophila and the diatom Pseudo‐nitzschia subcurvata. Geminigera cryophila (CCMP 2564) was isolated from the Southern Ocean and obtained from Matt Johnson's Laboratory of Protistan Ecology at the Woods Hole Oceanography Institute, United States. Pseudo-nitzschia subcurvata was isolated from the Southern Ocean by P. Assmy during Polarstern expedition ANT- XXI/4. Both species were grown at 2°C under different pCO2 (400 vs. 900 μatm) and Fe (0.6 vs. 1.2 nM) conditions. For P. subcurvata, an additional high pCO2 level was applied (1400 μatm). For both species, growth, photophysiology, cellular quotas of particulate organic carbon, trace metals and pigments were assessed. Our study reveals that Fe limitation was detrimental for the growth of G. cryophila and suppressed the positive OA effect. The diatom was efficient in coping with low Fe, but was stressed by OA while both factors together strongly impacted its growth. The distinct physiological response of both species to OA and Fe limitation explains their occurrence in the field. Based on our results, Fe availability is an important modulator of OA effects on SO phytoplankton, with different implications on the occurrence of cryptophytes and diatoms in the future.
DOI: 10.1594/pangaea.943274
title: Seawater carbonate chemistry and growth rates, carbon utilization and the internal pH regulation at the site of calcification in Emiliania huxleyi, Calcidiscus leptoporus and Pleurochrysis

description: Ocean acidification (OA) appears to have diverse impacts on calcareous coccolithophores, but the cellular processes underlying these responses are not well understood. Here we use stable boron and carbon isotopes, B/Ca ratios, as well as inorganic and organic carbon production rates to investigate the carbon utilization and the internal pH regulation at the site of calcification in Emiliania huxleyi, Pleurochrysis carterae and Calcidiscus leptoporus cultured over a wide pCO2 range (180 to 1000 μatm). Despite large variability, the geochemistry data indicate species-specific modes of pH control and differences in the utilization of inorganic carbon. Boron isotope data suggest that all three species generally upregulate the pH of the calcification fluid (pHCF) compared to surrounding seawater, which coincides with relatively constant growth rates and cellular ratios of inorganic to organic carbon. Furthermore, species exhibit different strategies in regulating their pHCF, i.e., two species maintain homeostasis (pHCF = ∼ 8.7), while one species shows a constant offset to the surrounding seawater (ΔpH = ∼0.6 units) over the entire tested pCO2 range. In addition to these different strategies, carbon isotope data suggests that high plasticity in the utilization of dissolved inorganic carbon might be an explanation for species-specific differences in coccolithophore responses to OA.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-04-13.
DOI: 10.1594/pangaea.944854
title: Seawater carbonate chemistry and photophysiology, growth, carbon production, and cellular pigment and trace metal quotas of the Antarctic phytoplankton Geminigera cryophila and Pseudo‐nitzschia subcurvata

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-05-24.