cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25427812.v1
title: Data and code associated with the manuscript "Short tandem repeats delineate gene bodies across eukaryotes" (Reinar et al.)

description: The "Rev_Pipeline_and_Figures" Jupyter Notebook contains code required to reproduce results and figures in the manuscript including the repetitiveness function run on simulated data to report repetitiveness of A and AT motifs.The repository also includes theTimeTree phylogenetic tree for 891 species (.nwk, "SourceData.Figure1d_2")Relative positions of ULTRA monomer and dimer STRs, and lengths of intergenic sequences (.hdf5, "SourceData.Figure2a_2")Complete repetitiveness analysis with metadata (.tsv, "SourceData.Figure4-5")Transcription factor binding site analyses (.tsv, "SourceData.Figure7e_2")List of housekeeping functions (.txt, "SourceData.Figure7c_2")GO analysis (.tsv, "SourceData.Figure7c_3")The remaining Source Data can be found with the paper.
DOI: 10.6084/m9.figshare.28360268.v1
title: Instrument codebook

description: The data codebook contains the survey questions and derived variables from surveys completed by participants in 2018 (T1) through 2022 (T5). The codebook itself is a dataset containing the variable names, associated question wording, year, structure, and coding scheme used in the study.
DOI: 10.3535/3na-enh-wh0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qbb-5xb-4hs
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/36f-q6k-cn9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26793088.v1
title: p21 peptide simulation data. Dataset includes imaged trajectory files for the five Pep-GaMD simulations runs. We have also provided the topology and the pdb file.

description: Insights into the structural dynamic mechanism of PC1 activation by TA peptide agonists p9, p17 and p21 to provide an in-depth understanding that will facilitate development of therapeutics targeting PC1 for ADPKD by targeting PC1treatment.
DOI: 10.3535/hyc-5l0-eq8
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m1n-an3-0dl
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cgl-555-zhr
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zcn-nz3-2z3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28571990.v1
title: Annex A_Baseline Survey Dataset for Positive Deviant Identification.xlsx

description: This nutrition baseline survey data from rural Madhya Pradesh, India, was used to identify Positive Deviant mother-child pairs that have optimal dietary diversity scores by applying the Pareto optimal household performance analysis.
DOI: 10.3535/2rb-148-8kv
title: Anoigmaichnus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0v9-jlr-73z
title: Belonechitina? sp. D

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b00-2w7-78x
title: Atractosella cataractaca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ess-d74-jdk
title: Thelodus parvidens

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/635-hnx-fqq
title: Craniiformea Popov, Basset, Holmer & Laurie, 1993

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jb4-xxr-e3w
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.938230.v1
title: Connecting diagnostic labs: Cafe Variome and DNA sequencing software

description: During the FP7 project GEN2PHEN (http://www.gen2phen.org/) we developed the concept of sharing pointers to diagnostics data to facilitate the public exchange of the existence of information, avoiding the problem of directly exchanging diagnostics information. A minimal set of data was defined to point to variant/mutation information generated by diagnostics laboratories: required data are exact genomic positions of the detected variants and the source (which lab or user generated the data, or publication or public data base), optional information may include the amino acid or protein change, phenotype information, or an anonymised patient identifier. The project also developed a standard to exchange the information: VarioML (http://varioml.org/). We present Café Variome, which has been implemented as a federated market place for these pointers: a public instance has been created (http://www.cafevariome.org/) and populated with public data (such as dbSNP, 1000 Genomes…) or pointers to data (HGMD, LSDBs…). Users can either chose to submit directly to this public instance, or setup a local instance to share detailed data with selected collaborators (such as a national network or a disease-specific collaboration) and connect this instance to the public instance, sharing only pointers. The system has comprehensive management tools for fine-grained user control as well as data sharing control. Because manual data submission is error prone as well as a major barrier to usage, we implemented public APIs to allow both the submission and automated query automatically of data via secure internet connection. We will present two examples of this automatic transmission of pointer information: Gensearch for capillary DNA sequencing and GensearchNGS for NGS DNA sequencing.
DOI: 10.3535/nbl-53j-vmj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wb9-6b1-zm3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ylg-75q-qxr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/642-npv-2tj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3718318_d3.v1
title: Additional file 3: of Delineating functional principles of the bow tie structure of a kinase-phosphatase network in the budding yeast

description: Predicted kinases implicated in the HOG pathway: The kinase-substrate interactions that were predicted to be implicated in osmotic shock in this study. (XLSX 14Â kb)
DOI: 10.3535/4ms-vdz-35f
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zyh-eal-l1x
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q0n-sxj-4vx
title: Craniiformea Popov, Basset, Holmer & Laurie, 1993

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l4k-yjv-80h
title: †Philhedra Koken, 1889

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r3j-nnk-9h8
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27316451.v1
title: Supplementary Material from The Paleozoic assembly of the holocephalan body plan far preceded post-Cretaceous radiations into the ocean depths

description: Chimaera_habitat_data.csv
DOI: 10.6084/m9.figshare.5873559.v1
title: MAP_data.xlsx

description: This dataset contains the results of a bleeding-resuscitation animal experiment. After anesthesia and instrumentation (t<sub>bsl</sub>) animals were bled till the initial stroke volume index dropped by 50% (t<sub>0</sub>). Fluid replacement was performed in 4 equivalent steps (t<sub>1-4</sub>) with balanced crystalloid solution to reach the baseline values of MAP. Invasive hemodynamic measurements and blood gas analyses were performed after each step.<br>
DOI: 10.23641/asha.5848056.v1
title: Poor speech perception is not a CAS core deficit (Zuk et al., 2018)

description: <b>Purpose: </b>Childhood apraxia of speech (CAS) is hypothesized to arise from deficits in speech motor planning and programming, but the influence of abnormal speech perception in CAS on these processes is debated. This study examined speech perception abilities among children with CAS with and without language impairment compared to those with language impairment, speech delay, and typically developing peers.<b>Method:</b> Speech perception was measured by discrimination of synthesized speech syllable continua that varied in frequency (/dɑ/–/ɡɑ/). Groups were classified by performance on speech and language assessments and compared on syllable discrimination thresholds. Within-group variability was also evaluated.<b>Results: </b>Children with CAS without language impairment did not significantly differ in syllable discrimination compared to typically developing peers. In contrast, those with CAS and language impairment showed significantly poorer syllable discrimination abilities compared to children with CAS only and typically developing peers. Children with speech delay and language impairment also showed significantly poorer discrimination abilities, with appreciable within-group variability.<b>Conclusions: </b>These findings suggest that speech perception deficits are not a core feature of CAS but rather occur with co-occurring language impairment in a subset of children with CAS. This study establishes the significance of accounting for language ability in children with CAS.<br><b>Supplemental Material S1. </b>Presence of childhood apraxia of speech (CAS) features for individual participants.<b><br></b><b>Supplemental Material S2. </b>Speech and language scores by participant. <br>Zuk, J., Iuzzini-Seigel, J., Cabbage, K., Green, J. R., & Hogan, T. P. (2018). Poor speech perception is not a core deficit of childhood apraxia of speech: Preliminary findings. <i>Journal of Speech, Language, and Hearing Research, 61,</i> 583–592<i>. </i>https://doi.org/10.1044/2017_JSLHR-S-16-0106
DOI: 10.3535/mxg-ds3-0e7
title: †Eoplectodonta Kozlowski, 1929

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7330529.v1
title: Human Convalescent Serum Sample after CHIKV and DENV seroconversion.

description: Human Convalescent Serum Sample collected after CHIKV and DENV seroconversion.
DOI: 10.3535/2nv-qam-v2y
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xgl-dnb-hz9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tzh-thk-2g1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/15q-3bj-ed4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5dx-h91-p88
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/163-m40-dy3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jez-r4z-7mr
title: Conochitina simplex

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/618-75y-nqn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.23644/uu.19346372.v1
title: Supplementary_document1.xlsx

description: Actinobacillus suis unique proteins from clinical strains
DOI: 10.3535/111-fw5-nex
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dw3-t1k-l4r
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.6600131.v1
title: Additional file 11: of Characterization of the Populus Rab family genes and the function of PtRabE1b in salt tolerance

description: Table S4. Functional annotation of genes in PtRabs co-expression network. (XLSX 484 kb)
DOI: 10.3535/4pd-s4f-erm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xc7-l6b-jvl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22724183.v1
title: Data Viral Shedding COVID-19

description: Data Vira Shedding COVID 19
DOI: 10.6084/m9.figshare.7967489.v1
title: Item D China Book graph.gephi

description: <b>This is an item of the dataset titled "A History from Below: Translators in the Publication Network of Four Magazines of China Book Company, 1913-1923" (DOI:10.6084/m9.figshare.7380389), in which description of the item is available. The purpose of separating the item from the dataset is for the insertion of the hyperlink of the item in the paper of the same title, forthcoming in <i>Translation Studies</i>.</b>
DOI: 10.3535/ssx-5za-glm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bst-qba-83l
title: Lagenochitina esthonica

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j3m-3ha-3v1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r9q-7nv-f8d
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4lr-94r-8vc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8mm-hf7-wse
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hx0-z7z-w0c
title: †Strophomenidae King, 1846

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pzq-bql-h8b
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12738749.v1
title: Unusually paced life history strategies of marine megafauna drive atypical sensitivities to environmental variability

description: Model parameters, simulation code to create the figures of the manuscript: Unusually paced life history strategies of marine megafauna drive atypical sensitivities to environmental variability <br>Isabel M. Smallegange, Marta Flotats Avilés, Kim Eustache
DOI: 10.6084/m9.figshare.7619300.v1
title: R code for statistical analysis

description: This file contains R code for the data analyzed in the paper from Frontiers in Ecology and Evolution<br>
DOI: 10.3535/wf0-ygs-082
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2ar-q9y-18j
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cls-4zc-9e8
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1171103.v1
title: Effect of Industrial Bleach Wash and Softening on the Physical, Mechanical and Color Properties of Denim Garments

description: Garments washing is a novel process to impart worn-out look, to modify the appearance and to<br>improve the comfort ability of the garments. Bleach wash is used to fade the color of denim in a higher degree<br>as well as bleach wash has effect on the physical and mechanical properties of the denim also. This paper<br>presents the impact of bleach wash and subsequent softening treatment on 100% cotton denim dyed with indigo<br>dye. Garments were washed using a bleach concentration of 10 g/l for 30 minutes in 50oC temperature and then<br>softened using standard recipe. The physical, mechanical and color properties were analyzed in before wash,<br>after desizing, after bleaching and after softening. The properties that were analyzed include hand feel, tensile<br>strength, seam strength, fabric weight, stiffness, dimensional stability and color fading. Bleach washed and<br>softened garments exhibit a great difference in the physical, mechanical and color properties than the unwashed<br>garments.
DOI: 10.3535/e5l-awz-21l
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/74j-s1a-r3s
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zcb-ky3-rsr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16592693.v2
title: ProjecTILs murine reference atlas of virus-specific CD4+ T cells

description: GP66:I-A<sup>b+</sup> spleen T cells were sorted from LCMV infected animals either 7 or 21 days after Clone 13 infection, conditions referred to as Early and Late Chronic. In addition, similar populations were isolated 7, 21 and &gt;60 days after LCMV Armstrong infection (samples referred to as Acute, Early and Late Memory, respectively). A total of 11 datasets were processed with droplet-based (10x Chromium) single-cell RNA sequencing resulting in over 35,000 high-quality virus-specific CD4<sup>+ </sup>T cell transcriptomes. In addition, selected samples were used to measure simultaneously TCR usage and transcriptome at the single-cell resolution. For the construction of the CD4+ T cell reference atlas, datasets were downsampled to balance the contribution from different types of infection and time point. To this end, a maximum of 5,000 cells were randomly selected for each of the 5 subsets: acute day7, acute day21, acute day60, chronic day7 and chronic day21. To mitigate batch effects between samples, we integrated the 11 samples using STACAS (Andreatta & Carmona 2020) with the following parameters: number of variable genes=800, dist.thr=0.6, dims=20. On the integrated data, unsupervised clusters were calculated using the <i>FindNeighbors</i> and <i>FindClusters</i> functions from Seurat (Hao et al. 2021) with parameters: k.parameter=10, resolution=0.4. Finally, unsupervised clusters were manually annotated to obtain nine “functional clusters” that summarize the diversity of CD4<sup>+ </sup>T cells in acute and chronic infection. The dataset is available as a Seurat object, with functional cluster, sample of origin and several other measurement for each cell stored in the object metadata. The object can be loaded into an R session using the readRDS() function, and directly used as a reference atlas for ProjecTILs (Andreatta et al. 2021). Sequencing data underlying this object can be obtained at NCBI GEO under accession number GSE182320.
DOI: 10.6084/m9.figshare.20288577.v1
title: Huff et al. 2022 Experimental Dataset

description: Experimental dataset for the article "Optogenetic stimulation of pre-bötzinger complex reveals novel circuit interactions in swallow-breathing coordination " by Huff et al 2022 DOI: 10.1073/pnas.2121095119
DOI: 10.3535/s3z-bn7-k2h
title: †Philhedra Koken, 1889

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bqj-jq4-wh9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z2q-kmn-xbj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bg0-jbr-snh
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1xt-d2d-rhc
title: †Philhedra Koken, 1889

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xc8-f23-31d
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15102087.v1
title: Correction Dataset

description: Dataset for the correction for Rule et al. 2020 First monk seal from the Southern Hemisphere rewrites the evolutionary history of true seals. Proceedings of the Royal Society B: Biological Sciences. 287: 20202318.<br>Files for the total evidence fossilised birth-death phylogenetic analysis and biogeographic analysis, with changes noted in the correction.
DOI: 10.6084/m9.figshare.24511312.v2
title: 1KPPG dataset

description: The ability to take care of one's own health is the need of the hour as the expenditure on health-related needs seems to be on the rise. This will not only prevent the inconvenience of becoming ill, but it will reduce the economic burden of the subject. Thus, self-monitoring devices such as pulse oximeter, electronic blood pressure apparatus have helped people in this direction. We, through this study aimed something similar by creating an application which would use a smartphone in detecting pulse rate. There are already portable devices in the market such as pulse oximeters which do a reasonably good job. But, as they are not carried wherever people go, the smartphone became our choice of device to solve the problem of portability. Also, when situation arises if medical personnel need to look at the readings remotely, smartphone application will provide the necessary convenience of sharing the data. We found that our application estimated the pulse rate with reasonable accuracy compared to the values from standard pulse oximeters.<br>
DOI: 10.15468/dl.269kmc
title: Occurrence Download

description: A dataset containing 10299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ulva linza L."
 ]
}

 The dataset includes 10299 records from 261 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009902-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-42012
title: E.C. Joannes, Southern California, 1934

description: 8 photographs of E.C. Joannes and his purchase order, Southern California, 1934. "Subject: Mr. Joannes E.C.; Agency: Pop Creamer; Client: Ben Hur Coffee; Job: 10-12-76; Year: 1934; Original print order: 6 #1, 1 #1; Size: 8x10; Finish: gl[ossy] 1/2 margin, Opal B. [ilg] folder; Re-order: 3 #1" -- on envelope front. "Operator's Report (Name): Henry; Original photographs- at studio: 1, 8x10; Amount: 6.00; Extra Charges: #819" -- on envelope back.