cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3686836_d3
title: Additional file 4: File S2. of Variability among Cucurbitaceae species (melon, cucumber and watermelon) in a genomic region containing a cluster of NBS-LRR genes

description: Protein fasta sequences of the resistance genes in melon, cucumber and watermelon used in this study. Melon fasta sequences have a resistance gene code [11, 16] and gene name [11]. (TXT 23Â kb)
DOI: 10.6084/m9.figshare.c.3686836_d4.v1
title: Additional file 3: File S1. of Variability among Cucurbitaceae species (melon, cucumber and watermelon) in a genomic region containing a cluster of NBS-LRR genes

description: List of the resistance genes in melon, cucumber and watermelon used in this study, along with the gene code, resistance gene class and position in the genome. Protein fasta sequences are available in Additional File 4. Melon gene nomenclature has three codes: gene code [5], resistance gene code [11, 16] and gene name [11]. These genes are shown in Fig. 2. LG = Linkage Group. (XLS 11 kb)
DOI: 10.6084/m9.figshare.c.3686836_d4
title: Additional file 3: File S1. of Variability among Cucurbitaceae species (melon, cucumber and watermelon) in a genomic region containing a cluster of NBS-LRR genes

description: List of the resistance genes in melon, cucumber and watermelon used in this study, along with the gene code, resistance gene class and position in the genome. Protein fasta sequences are available in Additional File 4. Melon gene nomenclature has three codes: gene code [5], resistance gene code [11, 16] and gene name [11]. These genes are shown in Fig. 2. LG = Linkage Group. (XLS 11 kb)
DOI: 10.6084/m9.figshare.c.3686857_d11.v1
title: Additional file 3: Tables S1â  S6. of Revised computational metagenomic processing uncovers hidden and biologically meaningful functional variation in the human microbiome

description: Supplementary tables for this study. (XLSX 337 kb)
DOI: 10.6084/m9.figshare.c.3686857_d11
title: Additional file 3: Tables S1â  S6. of Revised computational metagenomic processing uncovers hidden and biologically meaningful functional variation in the human microbiome

description: Supplementary tables for this study. (XLSX 337 kb)
DOI: 10.6084/m9.figshare.c.3686884_d2.v1
title: Additional file 4: Data S1. of Phylogeography of human Y-chromosome haplogroup Q3-L275 from an academic/citizen science collaboration

description: VCF and BED files for the sequenced Y-chromosomes. (RAR 12315Â kb)
DOI: 10.15468/dl.8j72yy
title: Occurrence Download

description: A dataset containing 344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acantholabrus palloni (Risso, 1810)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 344 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038106-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3686884_d12
title: Additional file 8: Table S6. of Phylogeography of human Y-chromosome haplogroup Q3-L275 from an academic/citizen science collaboration

description: Data retrieval and phylogenetic features of the sequence alignment used for the tree. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3686884_d13
title: Additional file 3: Table S2. of Phylogeography of human Y-chromosome haplogroup Q3-L275 from an academic/citizen science collaboration

description: Genotypes of the individual samples. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3688195_d1.v1
title: Additional file 2: Table S3. of Diversity and regulatory impact of copy number variation in the primate Macaca fascicularis

description: Quantitative genotypes for all 15,183 inferred CNV regions (CNVRs). chr represents the chromosome on which the CNVR is located, while start and end indicate the coordinates of the first respectively last CGH probe contained in the CNVR. length_kb is the estimated CNVR length in kilobases. CNV_detection_status indicates whether a CNVR contains only deletions (del), duplications (dup) or both (cnv) and eqtl_mapping indicates whether a given CNVR was detected in at least two individuals and was therefore used for cis-eQTL mapping (1) or not (0). The columns thereafter are the quantitative genotypes defined as an individualâ  s median log2-ratio of all CGH probes within a given CNVR. (XLSX 5415 kb)
DOI: 10.6084/m9.figshare.c.3688195_d1
title: Additional file 2: Table S3. of Diversity and regulatory impact of copy number variation in the primate Macaca fascicularis

description: Quantitative genotypes for all 15,183 inferred CNV regions (CNVRs). chr represents the chromosome on which the CNVR is located, while start and end indicate the coordinates of the first respectively last CGH probe contained in the CNVR. length_kb is the estimated CNVR length in kilobases. CNV_detection_status indicates whether a CNVR contains only deletions (del), duplications (dup) or both (cnv) and eqtl_mapping indicates whether a given CNVR was detected in at least two individuals and was therefore used for cis-eQTL mapping (1) or not (0). The columns thereafter are the quantitative genotypes defined as an individualâ  s median log2-ratio of all CGH probes within a given CNVR. (XLSX 5415 kb)
DOI: 10.6084/m9.figshare.c.3688216_d1.v1
title: Additional file 1: of Comparison of virulence of Francisella tularensis ssp. holarctica genotypes B.12 and B.FTNF002-00

description: Weight data and clinical sign scores of Francisella tularensis ssp. holarctica infected Fischer 344 rats. The animals were infected with the B.12 or the B.FTNF002-00 genotype (genotype of infectious agent) with either 100, 101 and 102 CFUs of the bacteria suspensions (infectious dose). Weight data (in grams) on the day of infection (initial weight) and between days 1–13 post infection (pi.) with the clinical sign scores (graded as none = 0, mild = 1, moderate = 2 and severe = 3; 3* = the animal succumbed to the infection) are provided for all rats. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3688216_d1
title: Additional file 1: of Comparison of virulence of Francisella tularensis ssp. holarctica genotypes B.12 and B.FTNF002-00

description: Weight data and clinical sign scores of Francisella tularensis ssp. holarctica infected Fischer 344 rats. The animals were infected with the B.12 or the B.FTNF002-00 genotype (genotype of infectious agent) with either 100, 101 and 102 CFUs of the bacteria suspensions (infectious dose). Weight data (in grams) on the day of infection (initial weight) and between days 1–13 post infection (pi.) with the clinical sign scores (graded as none = 0, mild = 1, moderate = 2 and severe = 3; 3* = the animal succumbed to the infection) are provided for all rats. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3688222_d1.v1
title: Additional file 2: Table S2. of Characteristics of siRNAs derived from Southern rice black-streaked dwarf virus in infected rice and their potential role in host gene regulation

description: List of the SRBSDV-derived siRNAs identified by deep sequencing from infected rice samples at 14 dpi. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.c.3688222_d1
title: Additional file 2: Table S2. of Characteristics of siRNAs derived from Southern rice black-streaked dwarf virus in infected rice and their potential role in host gene regulation

description: List of the SRBSDV-derived siRNAs identified by deep sequencing from infected rice samples at 14 dpi. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.c.3688225_d1.v1
title: Additional file 4: Table S4. of Whole genome scan reveals the genetic signature of African Ankole cattle breed and potential for higher quality beef

description: Gene Ontology Biological Process terms obtained from DAVID gene ontology analysis using all XP-EHH and XP-CLR gene lists. (XLS 47 kb)
DOI: 10.6084/m9.figshare.c.3688192_d5.v1
title: MOESM6 of Optimized creation of glioblastoma patient derived xenografts for use in preclinical studies

description: Additional file 6. Results of genetic fingerprint analysis. Identity verification of all PDX cases over several in vivo passages by genetic fingerprint analysis.
DOI: 10.6084/m9.figshare.c.3688222_d5
title: Additional file 4: Table S4. of Characteristics of siRNAs derived from Southern rice black-streaked dwarf virus in infected rice and their potential role in host gene regulation

description: List of the SRBSDV-derived siRNAs identified at both 14 dpi and 28 dpi. (XLSX 28 kb)
DOI: 10.15468/dl.xhxmwz
title: Occurrence Download

description: A dataset containing 593575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is one of (Acer platanoides L., Adelges tsugae Annand, 1924, Agrilus planipennis Fairmaire, 1888, Alliaria petiolata (M.Bieb.) Cavara & Grande, Channa argus (Cantor, 1842), Crocodylus niloticus Laurenti, 1768, Dreissena polymorpha (Pallas, 1771), Faxonius rusticus (Girard, 1852), Frangula alnus Mill., Heracleum mantegazzianum Sommier & Levier, Heracleum sphondylium L., Hydrocharis morsus-ranae L., Impatiens glandulifera Royle, Kali tragus (L.) Scop., Lissachatina fulica (Bowdich, 1822), Lycorma delicatula (White, 1845), Myriophyllum spicatum L., Phragmites australis subsp. australis, Potamogeton crispus L., Pterois volitans (Linnaeus, 1758), Pueraria lobata (Willd.) Ohwi, Python bivittatus Kuhl, 1820, Reynoutria japonica Houtt., Reynoutria sachalinensis (F.Schmidt) Nakai, Reynoutria ×bohemica Chrtek & Chrtková, Rhamnus cathartica L., Rhinella marina (Linnaeus, 1758), Stratiotes aloides L., Trapa natans L., Vincetoxicum nigrum (L.) Moench, Vincetoxicum rossicum (Kleopow) Barbar.)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 593575 records from 587 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038072-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3688192_d5
title: MOESM6 of Optimized creation of glioblastoma patient derived xenografts for use in preclinical studies

description: Additional file 6. Results of genetic fingerprint analysis. Identity verification of all PDX cases over several in vivo passages by genetic fingerprint analysis.
DOI: 10.6084/m9.figshare.c.3688225_d5.v1
title: Additional file 2: Table S2. of Whole genome scan reveals the genetic signature of African Ankole cattle breed and potential for higher quality beef

description: A summary of genes from Sanga vs. Zebu (B. Indicus) XP-CLR test statistics comparison. (XLS 54 kb)
DOI: 10.6084/m9.figshare.c.3688231_d1.v1
title: Additional file 1: of CD14brightCD16+ intermediate monocytes are induced by interleukin-10 and positively correlate with disease activity in rheumatoid arthritis

description: Supplemental Method and Figure. (ZIP 314 kb)
DOI: 10.6084/m9.figshare.c.3688222_d6.v1
title: Additional file 1: Table S1. of Characteristics of siRNAs derived from Southern rice black-streaked dwarf virus in infected rice and their potential role in host gene regulation

description: List of the RT-qPCR primers used in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3688222_d6
title: Additional file 1: Table S1. of Characteristics of siRNAs derived from Southern rice black-streaked dwarf virus in infected rice and their potential role in host gene regulation

description: List of the RT-qPCR primers used in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3688225_d5
title: Additional file 2: Table S2. of Whole genome scan reveals the genetic signature of African Ankole cattle breed and potential for higher quality beef

description: A summary of genes from Sanga vs. Zebu (B. Indicus) XP-CLR test statistics comparison. (XLS 54 kb)
DOI: 10.6084/m9.figshare.c.3688192_d6.v1
title: MOESM2 of Optimized creation of glioblastoma patient derived xenografts for use in preclinical studies

description: Additional file 2. Overview of patient characteristics diagnosed with WHOÂ°Iâ  III tumors. Summary of molecular alterations, cryoperiod of the samples prior to implantation and the outcome of PDX establishment attempts.
DOI: 10.6084/m9.figshare.c.3688225_d6.v1
title: Additional file 1: Table S1. of Whole genome scan reveals the genetic signature of African Ankole cattle breed and potential for higher quality beef

description: A summary of genes from Sanga vs. Zebu (B. Indicus) XP-EHH test statistics comparison. (XLS 64 kb)
DOI: 10.6084/m9.figshare.c.3688231_d1
title: Additional file 1: of CD14brightCD16+ intermediate monocytes are induced by interleukin-10 and positively correlate with disease activity in rheumatoid arthritis

description: Supplemental Method and Figure. (ZIP 314 kb)
DOI: 10.6084/m9.figshare.c.3688225_d6
title: Additional file 1: Table S1. of Whole genome scan reveals the genetic signature of African Ankole cattle breed and potential for higher quality beef

description: A summary of genes from Sanga vs. Zebu (B. Indicus) XP-EHH test statistics comparison. (XLS 64 kb)
DOI: 10.6084/m9.figshare.c.3688219_d2.v1
title: Additional file 1: of Genistein treatment improves fracture resistance in obese diabetic mice

description: Genistein Dataset. Data used in the analyses in this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3688192_d6
title: MOESM2 of Optimized creation of glioblastoma patient derived xenografts for use in preclinical studies

description: Additional file 2. Overview of patient characteristics diagnosed with WHOÂ°Iâ  III tumors. Summary of molecular alterations, cryoperiod of the samples prior to implantation and the outcome of PDX establishment attempts.
DOI: 10.6084/m9.figshare.c.3688219_d2
title: Additional file 1: of Genistein treatment improves fracture resistance in obese diabetic mice

description: Genistein Dataset. Data used in the analyses in this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3688207_d6
title: Additional file 4 of How can functional annotations be derived from profiles of phenotypic annotations?

description: Table S3. Gene annotations to CMPO terms. (CSV 180 kb)
DOI: 10.6084/m9.figshare.c.3688282_d2.v1
title: Additional file 2: Table S3. of Chloroplast proteome response to drought stress and recovery in tomato (Solanum lycopersicum L.)

description: Identification details for the proteins observed as differentially represented by 2D-DIGE. Reported are spot number, protein accession/description, MASCOT score, total and unique peptides detected, identification rank and unicity, experimental and theoretical peptide mass value, peptide charge state, peptide mass error, number of peptide missed cleavage(s), peptide score, peptide expectation value and sequence, including amino acid(s) modification. (XLSX 1109Â kb)
DOI: 10.6084/m9.figshare.c.3688282_d2
title: Additional file 2: Table S3. of Chloroplast proteome response to drought stress and recovery in tomato (Solanum lycopersicum L.)

description: Identification details for the proteins observed as differentially represented by 2D-DIGE. Reported are spot number, protein accession/description, MASCOT score, total and unique peptides detected, identification rank and unicity, experimental and theoretical peptide mass value, peptide charge state, peptide mass error, number of peptide missed cleavage(s), peptide score, peptide expectation value and sequence, including amino acid(s) modification. (XLSX 1109Â kb)
DOI: 10.6084/m9.figshare.c.3688291_d1.v1
title: Additional file 4: of SEPIa, a knowledge-driven algorithm for predicting conformational B-cell epitopes from the amino acid sequence

description: SEPIa prediction model, implemented using the scikit-learn package. (ZIP 3901 kb)
DOI: 10.15468/dl.j7qwgd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acantholiparis opercularis Gilbert & Burke, 1912",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038107-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3688291_d1
title: Additional file 4: of SEPIa, a knowledge-driven algorithm for predicting conformational B-cell epitopes from the amino acid sequence

description: SEPIa prediction model, implemented using the scikit-learn package. (ZIP 3901 kb)
DOI: 10.6084/m9.figshare.c.3688312_d1.v1
title: Additional file 2: of Validation study of the Polish version of the Evidence-Based Practice Profile Questionnaire

description: Data analysis. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3688312_d1
title: Additional file 2: of Validation study of the Polish version of the Evidence-Based Practice Profile Questionnaire

description: Data analysis. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3688321_d1
title: Additional file 2: of Medical students’ situational motivation to participate in simulation based team training is predicted by attitudes to patient safety

description: SIMS values, Individual values of the SIMS questionnaire before and after training, the different kinds of motivation calculated. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3689107_d1
title: Additional file 2: of Slow lung clearance and limited translocation of four sizes of inhaled iridium nanoparticles

description: Ir-192 content of organs and tissues. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3689107_d1.v1
title: Additional file 2: of Slow lung clearance and limited translocation of four sizes of inhaled iridium nanoparticles

description: Ir-192 content of organs and tissues. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3689122_d1.v1
title: Additional file 2: of Semantics-based plausible reasoning to extend the knowledge coverage of medical knowledge bases for improved clinical decision support

description: The knowledge base used in Experiment 2 is available at https://goo.gl/hUSV0e . (TXT 62Â kb)
DOI: 10.6084/m9.figshare.c.3689122_d1
title: Additional file 2: of Semantics-based plausible reasoning to extend the knowledge coverage of medical knowledge bases for improved clinical decision support

description: The knowledge base used in Experiment 2 is available at https://goo.gl/hUSV0e . (TXT 62Â kb)
DOI: 10.6084/m9.figshare.c.3689116_d5.v1
title: Additional file 4: Table S3. of Retinoic acid and TGF-Î˛ signalling cooperate to overcome MYCN-induced retinoid resistance

description: Genes differentially expressed by 24-h RA and 48-h Dox co-treatment. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3689116_d5
title: Additional file 4: Table S3. of Retinoic acid and TGF-Î˛ signalling cooperate to overcome MYCN-induced retinoid resistance

description: Genes differentially expressed by 24-h RA and 48-h Dox co-treatment. (XLSX 54 kb)
DOI: 10.15468/dl.2wfs3t
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthonus armatus Günther, 1878",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 13 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038108-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3689116_d6.v1
title: Additional file 2: Table S1. of Retinoic acid and TGF-Î˛ signalling cooperate to overcome MYCN-induced retinoid resistance

description: CPMkb expression values for all genes in each RNA-seq sample. (XLSX 5902 kb)
DOI: 10.6084/m9.figshare.c.3689116_d6
title: Additional file 2: Table S1. of Retinoic acid and TGF-Î˛ signalling cooperate to overcome MYCN-induced retinoid resistance

description: CPMkb expression values for all genes in each RNA-seq sample. (XLSX 5902 kb)
DOI: 10.6084/m9.figshare.c.3689119_d3.v1
title: Additional file 3: of Levels of insecticide resistance to deltamethrin, malathion, and temephos, and associated mechanisms in Aedes aegypti mosquitoes from the Guadeloupe and Saint Martin islands (French West Indies)

description: Mean expression and amplification ratios used for Spearman’s rank correlation tests. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3689122_d4.v1
title: Additional file 1: of Semantics-based plausible reasoning to extend the knowledge coverage of medical knowledge bases for improved clinical decision support

description: The knowledge base used in Experiment 1 is available at https://goo.gl/5hBCDP . (TXT 71Â kb)
DOI: 10.6084/m9.figshare.c.3689119_d3
title: Additional file 3: of Levels of insecticide resistance to deltamethrin, malathion, and temephos, and associated mechanisms in Aedes aegypti mosquitoes from the Guadeloupe and Saint Martin islands (French West Indies)

description: Mean expression and amplification ratios used for Spearman’s rank correlation tests. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3689122_d4
title: Additional file 1: of Semantics-based plausible reasoning to extend the knowledge coverage of medical knowledge bases for improved clinical decision support

description: The knowledge base used in Experiment 1 is available at https://goo.gl/5hBCDP . (TXT 71Â kb)
DOI: 10.6084/m9.figshare.c.3689146_d7
title: Additional file 7: Table S6. of Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details

description: Table summarizing and comparing the taxonomy assignments by homology searches against the NCBI nucleotide database on the one hand and by the MiDAS analysis tool on the other hand. (XLSX 220Â kb)
DOI: 10.6084/m9.figshare.c.3689179_d3.v1
title: Additional file 7: of The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes

description: 16S gene alignments in FASTA format. (TXT 38Â kb)
DOI: 10.6084/m9.figshare.c.3689182_d1.v1
title: Additional file 2 of VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces

description: Sample run file generated from JPrIME. Can be opened using standard text editors or through VMCMC. (MCMC 71065.6 KB)
DOI: 10.6084/m9.figshare.c.3689182_d1
title: Additional file 2 of VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces

description: Sample run file generated from JPrIME. Can be opened using standard text editors or through VMCMC. (MCMC 71065.6 KB)
DOI: 10.6084/m9.figshare.c.3689182_d4.v1
title: Additional file 3 of VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces

description: Sample run file generated from JPrIME using the same data as Additional file 2. Can be opened using standard text editors or through VMCMC. (MCMC 71065.6 KB)
DOI: 10.6084/m9.figshare.c.3689179_d7
title: Additional file 6: of The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes

description: Dataset containing all data used in the statistical models together with the strains IDâ  s and accession numbers. (XLSX 196Â kb)
DOI: 10.6084/m9.figshare.c.3689182_d4
title: Additional file 3 of VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces

description: Sample run file generated from JPrIME using the same data as Additional file 2. Can be opened using standard text editors or through VMCMC. (MCMC 71065.6 KB)
DOI: 10.6084/m9.figshare.c.3690553_d2
title: Additional file 3: Table S6. of Microgeographical structure in the major Neotropical malaria vector Anopheles darlingi using microsatellites and SNP markers

description: Per-individual An. darlingi detail of the number of sequence reads and unique stacks genotyped. (XLSX 18 kb)