cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12986503.v1
title: Additional file 4 of SWI/SNF complexes act through CBP-1 histone acetyltransferase to regulate acute functional tolerance to alcohol

description: Additional file 4: Analysis of human homologs of SWI/SNF-regulated genes. Included in this file are: 1- Results of DIOPT analysis for all genes in the intersection between swsn-1(os22ts) and swsn-9(ok1354) datasets. 2- Disease terms related to alcohol or substance use in the DisGeNET database. 3- Human homologs with gene disease associations (GDA) for alcohol/substance use terms on DisGeNET. 4- Citations on PubMed linking the human homologs to alcohol, alcohol-related diseases/diagnoses, and epigenetics. 5- Genes for which there are PubMed citations for alcohol phenotypes and epigenetics. 6- Top 20 genes from the PubMed analysis mapped back to C. elegans genes. 7- PubMed citations for the top 20 genes; limit of 20 citations returned.
DOI: 10.6084/m9.figshare.12986497.v1
title: Additional file 2 of SWI/SNF complexes act through CBP-1 histone acetyltransferase to regulate acute functional tolerance to alcohol

description: Additional file 2 GO term enrichment analysis of the differentially expressed genes. Included in this file are: 1- GO biological process, cellular component, and molecular function analysis of swsn-1(os22ts) DEGs (FDR
DOI: 10.6084/m9.figshare.12986497
title: Additional file 2 of SWI/SNF complexes act through CBP-1 histone acetyltransferase to regulate acute functional tolerance to alcohol

description: Additional file 2 GO term enrichment analysis of the differentially expressed genes. Included in this file are: 1- GO biological process, cellular component, and molecular function analysis of swsn-1(os22ts) DEGs (FDR
DOI: 10.6084/m9.figshare.12986494
title: Additional file 1 of SWI/SNF complexes act through CBP-1 histone acetyltransferase to regulate acute functional tolerance to alcohol

description: Additional file 1: Differential gene expression analysis results. Included in this file are: 1- swsn-1(os22ts) DEGs identified by DESeq2 (FDR
DOI: 10.6084/m9.figshare.12986503
title: Additional file 4 of SWI/SNF complexes act through CBP-1 histone acetyltransferase to regulate acute functional tolerance to alcohol

description: Additional file 4: Analysis of human homologs of SWI/SNF-regulated genes. Included in this file are: 1- Results of DIOPT analysis for all genes in the intersection between swsn-1(os22ts) and swsn-9(ok1354) datasets. 2- Disease terms related to alcohol or substance use in the DisGeNET database. 3- Human homologs with gene disease associations (GDA) for alcohol/substance use terms on DisGeNET. 4- Citations on PubMed linking the human homologs to alcohol, alcohol-related diseases/diagnoses, and epigenetics. 5- Genes for which there are PubMed citations for alcohol phenotypes and epigenetics. 6- Top 20 genes from the PubMed analysis mapped back to C. elegans genes. 7- PubMed citations for the top 20 genes; limit of 20 citations returned.
DOI: 10.6084/m9.figshare.12986506.v1
title: Additional file 5 of SWI/SNF complexes act through CBP-1 histone acetyltransferase to regulate acute functional tolerance to alcohol

description: Additional file 5. Supplemental information for Methods. Included in this file are: 1- Primers used in this study. 2- Total read counts for all RNA sequencing libraries. 3- Pearson’s correlation matrices for RNA sequencing samples and replicates.
DOI: 10.6084/m9.figshare.12986506
title: Additional file 5 of SWI/SNF complexes act through CBP-1 histone acetyltransferase to regulate acute functional tolerance to alcohol

description: Additional file 5. Supplemental information for Methods. Included in this file are: 1- Primers used in this study. 2- Total read counts for all RNA sequencing libraries. 3- Pearson’s correlation matrices for RNA sequencing samples and replicates.
DOI: 10.6084/m9.figshare.12986526
title: Additional file 1 of Proteomic and metabolic profile analysis of low-temperature storage responses in Ipomoea batata Lam. tuberous roots

description: Additional file 1. The peptides information of proteins identified in I. batata roots stored at 4 °C compared to tubers under 13 °C (CK) were subjected to NSI source followed by tandem mass spectrometry (MS/MS) in Q ExactiveTM Plus (Thermo) coupled online to the UPLC.
DOI: 10.6084/m9.figshare.12986526.v1
title: Additional file 1 of Proteomic and metabolic profile analysis of low-temperature storage responses in Ipomoea batata Lam. tuberous roots

description: Additional file 1. The peptides information of proteins identified in I. batata roots stored at 4 °C compared to tubers under 13 °C (CK) were subjected to NSI source followed by tandem mass spectrometry (MS/MS) in Q ExactiveTM Plus (Thermo) coupled online to the UPLC.
DOI: 10.6084/m9.figshare.12986529.v1
title: Additional file 2 of Proteomic and metabolic profile analysis of low-temperature storage responses in Ipomoea batata Lam. tuberous roots

description: Additional file 2. Protein description of DEPs in I. batata roots by &gt; 1.5 fold.
DOI: 10.6084/m9.figshare.12986529
title: Additional file 2 of Proteomic and metabolic profile analysis of low-temperature storage responses in Ipomoea batata Lam. tuberous roots

description: Additional file 2. Protein description of DEPs in I. batata roots by &gt; 1.5 fold.
DOI: 10.6084/m9.figshare.12986532.v1
title: Additional file 3 of Proteomic and metabolic profile analysis of low-temperature storage responses in Ipomoea batata Lam. tuberous roots

description: Additional file 3. Functional classification of Gene ontology (GO) annotation of I. batata proteins. Proteins were assigned into three categories: biological process, cellular components and molecular functions.
DOI: 10.6084/m9.figshare.12986538
title: Additional file 5 of Proteomic and metabolic profile analysis of low-temperature storage responses in Ipomoea batata Lam. tuberous roots

description: Additional file 5. KEGG annotations of DEPs in I. batata roots under cold stress (4 °C) compared to CK.
DOI: 10.6084/m9.figshare.12986538.v1
title: Additional file 5 of Proteomic and metabolic profile analysis of low-temperature storage responses in Ipomoea batata Lam. tuberous roots

description: Additional file 5. KEGG annotations of DEPs in I. batata roots under cold stress (4 °C) compared to CK.
DOI: 10.6084/m9.figshare.12986541.v1
title: Additional file 6 of Proteomic and metabolic profile analysis of low-temperature storage responses in Ipomoea batata Lam. tuberous roots

description: Additional file 6. Differentially expressed metabolites (DEMs) information in I. batata roots under cold stress (4 °C) compared to CK.
DOI: 10.6084/m9.figshare.12986532
title: Additional file 3 of Proteomic and metabolic profile analysis of low-temperature storage responses in Ipomoea batata Lam. tuberous roots

description: Additional file 3. Functional classification of Gene ontology (GO) annotation of I. batata proteins. Proteins were assigned into three categories: biological process, cellular components and molecular functions.
DOI: 10.6084/m9.figshare.12986535.v1
title: Additional file 4 of Proteomic and metabolic profile analysis of low-temperature storage responses in Ipomoea batata Lam. tuberous roots

description: Additional file 4. Subcellular location of differentially expressed proteins (DEPs) identified by &gt; 1.5 fold in I. batata roots under cold stress (4 °C) compared to CK.
DOI: 10.14457/cu.the.2005.1595
title: Catalytic effects of metals on the formation of silicon nitride from rice husk ash via carbothermal reduction and nitridation process

description: Rice husk was used in silicon nitride synthesis by the carbothermal reduction and nitridation which has been recognized as one of the common methods for producing silicon nitride. In this study, catalytic effects of metals in the carbothermal reduction and nitridation of rice husk as for silicon nitride synthesis were investigated. Rice husk was first pyrolyzed at 600 ํC for 3 h in argon atmospheres to produce rick husk as (RHA) before impregnated with 1-3% by mass of iron, aluminium, magnesium, copper and yttrium. The product obtained could be categorized into two forms, i.e. carbon containing dark gray power at the bottom of sample holder and white fibrous material on the top of dark gray powder. It is found that the fraction of alpha-silicon nitride is generally decreased when a metal is added to RHA. Only yttrium can enhance in the product, the fraction of alpha-phase. Hydrogen pretreatment of RHA at 1450 ํC and various time are also investigated. It is suggested that the condition of the pretreatment is a crucial factor to control the formation of the crystalline phases, i.e. silicon carbide and silicon nitride in the product
DOI: 10.6084/m9.figshare.12986535
title: Additional file 4 of Proteomic and metabolic profile analysis of low-temperature storage responses in Ipomoea batata Lam. tuberous roots

description: Additional file 4. Subcellular location of differentially expressed proteins (DEPs) identified by &gt; 1.5 fold in I. batata roots under cold stress (4 °C) compared to CK.
DOI: 10.6084/m9.figshare.12986541
title: Additional file 6 of Proteomic and metabolic profile analysis of low-temperature storage responses in Ipomoea batata Lam. tuberous roots

description: Additional file 6. Differentially expressed metabolites (DEMs) information in I. batata roots under cold stress (4 °C) compared to CK.
DOI: 10.6084/m9.figshare.12986545
title: Additional file 1 of Predictive capacity of obesity indices for high blood pressure among southern Ethiopian adult population: a WHO STEPS survey

description: Additional file 1.
DOI: 10.6084/m9.figshare.12986545.v1
title: Additional file 1 of Predictive capacity of obesity indices for high blood pressure among southern Ethiopian adult population: a WHO STEPS survey

description: Additional file 1.
DOI: 10.6084/m9.figshare.12986590.v1
title: Additional file 3 of Health related quality of life utility weights for economic evaluation through different stages of chronic kidney disease: a systematic literature review

description: Additional file 3. Full Text Screening. Full text screening results with decision, HTA compatibility, bias assessment, and grade.
DOI: 10.6084/m9.figshare.12986590
title: Additional file 3 of Health related quality of life utility weights for economic evaluation through different stages of chronic kidney disease: a systematic literature review

description: Additional file 3. Full Text Screening. Full text screening results with decision, HTA compatibility, bias assessment, and grade.
DOI: 10.6084/m9.figshare.12986583
title: Additional file 1 of DNA methylation of FKBP5 in South African women: associations with obesity and insulin resistance

description: Additional file 1: Figure S1. Sensitivity of pyrosequencing assays used to interrogate GR and FKBP5. Standard curves for GR CpG-226 to CpG-217 (A), GR CpG-209 to CpG-202 (B), FKBP5 CpG -585 to CpG-573 (C) and FKBP5 CpG542 and CpG543 (D). Table S1. Correlation between DNA methylation and cardiometabolic risk factors. Data expressed as the β-coefficient (p-value) adjusted for ethnicity, socioeconomic status and *alcohol consumption. Abbreviations: ASAT, abdominal subcutaneous adipose tissue; BMI, body mass index; CRP, c-reactive protein; GSAT, gluteal subcutaneous adipose tissue; HOMA-IR, Homeostatic model assessment-insulin resistance; SI, insulin sensitivity index; WC, waist circumference. Table S2. Correlation between FKBP5 mRNA levels and cardiometabolic risk factors. Data expressed as the Spearman’s r-coefficient (p-value). Abbreviations: ASAT, abdominal subcutaneous adipose tissue; BMI, body mass index; CRP, c-reactive protein; GSAT, gluteal subcutaneous adipose tissue; HOMA-IR, Homeostatic model assessment-insulin resistance; SES, socioeconomic status, SI, insulin sensitivity index; WC, waist circumference.
DOI: 10.6084/m9.figshare.12986587
title: Additional file 2 of Health related quality of life utility weights for economic evaluation through different stages of chronic kidney disease: a systematic literature review

description: Additional file 2. Grey Literature Search. Grey literature search results.
DOI: 10.6084/m9.figshare.12986583.v1
title: Additional file 1 of DNA methylation of FKBP5 in South African women: associations with obesity and insulin resistance

description: Additional file 1: Figure S1. Sensitivity of pyrosequencing assays used to interrogate GR and FKBP5. Standard curves for GR CpG-226 to CpG-217 (A), GR CpG-209 to CpG-202 (B), FKBP5 CpG -585 to CpG-573 (C) and FKBP5 CpG542 and CpG543 (D). Table S1. Correlation between DNA methylation and cardiometabolic risk factors. Data expressed as the β-coefficient (p-value) adjusted for ethnicity, socioeconomic status and *alcohol consumption. Abbreviations: ASAT, abdominal subcutaneous adipose tissue; BMI, body mass index; CRP, c-reactive protein; GSAT, gluteal subcutaneous adipose tissue; HOMA-IR, Homeostatic model assessment-insulin resistance; SI, insulin sensitivity index; WC, waist circumference. Table S2. Correlation between FKBP5 mRNA levels and cardiometabolic risk factors. Data expressed as the Spearman’s r-coefficient (p-value). Abbreviations: ASAT, abdominal subcutaneous adipose tissue; BMI, body mass index; CRP, c-reactive protein; GSAT, gluteal subcutaneous adipose tissue; HOMA-IR, Homeostatic model assessment-insulin resistance; SES, socioeconomic status, SI, insulin sensitivity index; WC, waist circumference.
DOI: 10.6084/m9.figshare.12986587.v1
title: Additional file 2 of Health related quality of life utility weights for economic evaluation through different stages of chronic kidney disease: a systematic literature review

description: Additional file 2. Grey Literature Search. Grey literature search results.
DOI: 10.6084/m9.figshare.12986671.v1
title: Additional file 3 of PacBio genome sequencing reveals new insights into the genomic organisation of the multi-copy ToxB gene of the wheat fungal pathogen Pyrenophora tritici-repentis

description: Additional file 3. Pyrenophora tritici-repentis sequence accessions downloaded from NCBI GenBank nucleotide database ( https://www.ncbi.nlm.nih.gov/nuccore ) on the 27/02/2020.
DOI: 10.6084/m9.figshare.12986671
title: Additional file 3 of PacBio genome sequencing reveals new insights into the genomic organisation of the multi-copy ToxB gene of the wheat fungal pathogen Pyrenophora tritici-repentis

description: Additional file 3. Pyrenophora tritici-repentis sequence accessions downloaded from NCBI GenBank nucleotide database ( https://www.ncbi.nlm.nih.gov/nuccore ) on the 27/02/2020.
DOI: 10.6084/m9.figshare.12986733.v1
title: Additional file 1 of Plants expressing murine pro-apoptotic protein Bid do not have enhanced PCD

description: Additional file 1. Forward and reverse PCR primers. Starting and stop codons are underlined, CACC sequence for the pENTR-TOPO subcloning is reported in bold.
DOI: 10.6084/m9.figshare.12986733
title: Additional file 1 of Plants expressing murine pro-apoptotic protein Bid do not have enhanced PCD

description: Additional file 1. Forward and reverse PCR primers. Starting and stop codons are underlined, CACC sequence for the pENTR-TOPO subcloning is reported in bold.
DOI: 10.6084/m9.figshare.12986751.v1
title: Additional file 1 of Laparoscopic procedure is associated with lower morbidity for simultaneous resection of colorectal cancer and liver metastases: an updated meta-analysis

description: Additional file 1: Figure S1. Forest plot of meta-analysis. (A) Blood loss. (B) Operating time. (C) Subgroup analysis of postoperative complications. (D) Clavien grade
DOI: 10.6084/m9.figshare.12986751
title: Additional file 1 of Laparoscopic procedure is associated with lower morbidity for simultaneous resection of colorectal cancer and liver metastases: an updated meta-analysis

description: Additional file 1: Figure S1. Forest plot of meta-analysis. (A) Blood loss. (B) Operating time. (C) Subgroup analysis of postoperative complications. (D) Clavien grade
DOI: 10.6084/m9.figshare.12986767.v1
title: Additional file 13 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 13 Blast search strategies for B. aphidiciola (taxid: 9). The Blast search strategies for the case example read in “Case example of B. aphidicola and C. botulinum misclassification” section against B. aphidiciola (taxid: 9) exclusing strain Schlechtendalia chinensis. The file ends in ASN and the reader can also open it as a normal text file.
DOI: 10.6084/m9.figshare.12986767
title: Additional file 13 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 13 Blast search strategies for B. aphidiciola (taxid: 9). The Blast search strategies for the case example read in “Case example of B. aphidicola and C. botulinum misclassification” section against B. aphidiciola (taxid: 9) exclusing strain Schlechtendalia chinensis. The file ends in ASN and the reader can also open it as a normal text file.
DOI: 10.6084/m9.figshare.12986770
title: Additional file 14 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 14 Blast search strategies for C. botulinum (taxid:1491). The Blast search strategies for the case example read in “Case example of B. aphidicola and C. botulinum misclassification” section against C. botulinum (taxid:1491). The file ends in ASN and the reader can also open it as a normal text file.
DOI: 10.6084/m9.figshare.12986758.v1
title: Additional file 10 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 10 15-mer shared with C. botulinum (taxid:1491). 15-mer shared between the case example read in “Case example of B. aphidicola and C. botulinum misclassification” section and fold-1 training data for C. botulinum (taxid:1491).
DOI: 10.6084/m9.figshare.12986782.v1
title: Additional file 4 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 4 The average accuracy per species from 1999 to 2019. The table shows the average accuracy per species for 5-fold cross-validation.
DOI: 10.6084/m9.figshare.12986785
title: Additional file 5 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 5 The standard deviation of the accuracy per species from 1999 to 2019. The table shows the standard deviation of the accuracy per species for 5-fold cross-validation.
DOI: 10.6084/m9.figshare.12986758
title: Additional file 10 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 10 15-mer shared with C. botulinum (taxid:1491). 15-mer shared between the case example read in “Case example of B. aphidicola and C. botulinum misclassification” section and fold-1 training data for C. botulinum (taxid:1491).
DOI: 10.6084/m9.figshare.12986770.v1
title: Additional file 14 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 14 Blast search strategies for C. botulinum (taxid:1491). The Blast search strategies for the case example read in “Case example of B. aphidicola and C. botulinum misclassification” section against C. botulinum (taxid:1491). The file ends in ASN and the reader can also open it as a normal text file.
DOI: 10.6084/m9.figshare.12986794
title: Additional file 8 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 8 Misclassified reads – phylum level. We trace our species classification results back to phylum level and most of the reads are assigned to the correct phylum level taxonomic labels. This table shows the reads that got misclassified in phylum level.
DOI: 10.6084/m9.figshare.12986794.v1
title: Additional file 8 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 8 Misclassified reads – phylum level. We trace our species classification results back to phylum level and most of the reads are assigned to the correct phylum level taxonomic labels. This table shows the reads that got misclassified in phylum level.
DOI: 10.6084/m9.figshare.12986779.v1
title: Additional file 3 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 3 RefSeq bacterial genomes published every year. This table shows the release year, the organism name and taxonomic ID of completed genomes in RefSeq Bacterial assembly summary.
DOI: 10.6084/m9.figshare.12986797
title: Additional file 9 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 9 15-mer shared with B. aphidiciola (taxid: 9). 15-mer shared between the case example read in “Case example of B. aphidicola and C. botulinum misclassification” section and fold-1 training data for B. aphidiciola (taxid: 9).
DOI: 10.6084/m9.figshare.12986785.v1
title: Additional file 5 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 5 The standard deviation of the accuracy per species from 1999 to 2019. The table shows the standard deviation of the accuracy per species for 5-fold cross-validation.
DOI: 10.6084/m9.figshare.12986797.v1
title: Additional file 9 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 9 15-mer shared with B. aphidiciola (taxid: 9). 15-mer shared between the case example read in “Case example of B. aphidicola and C. botulinum misclassification” section and fold-1 training data for B. aphidiciola (taxid: 9).
DOI: 10.6084/m9.figshare.12986805.v1
title: Additional file 2 of The conversion of formate into purines stimulates mTORC1 leading to CAD-dependent activation of pyrimidine synthesis

description: Additional file 2. Phosphoproteomics quantifications of HAP1-ΔSHMT2 cells supplemented with formate and controls, with rapamycin treatment.
DOI: 10.6084/m9.figshare.12986782
title: Additional file 4 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 4 The average accuracy per species from 1999 to 2019. The table shows the average accuracy per species for 5-fold cross-validation.
DOI: 10.6084/m9.figshare.12986779
title: Additional file 3 of Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

description: Additional file 3 RefSeq bacterial genomes published every year. This table shows the release year, the organism name and taxonomic ID of completed genomes in RefSeq Bacterial assembly summary.
DOI: 10.6084/m9.figshare.12986805
title: Additional file 2 of The conversion of formate into purines stimulates mTORC1 leading to CAD-dependent activation of pyrimidine synthesis

description: Additional file 2. Phosphoproteomics quantifications of HAP1-ΔSHMT2 cells supplemented with formate and controls, with rapamycin treatment.
DOI: 10.6084/m9.figshare.12986802
title: Additional file 1 of The conversion of formate into purines stimulates mTORC1 leading to CAD-dependent activation of pyrimidine synthesis

description: Additional file 1. Phosphoproteomics quantifications of HAP1-ΔSHMT2 cells supplemented with formate and controls.
DOI: 10.6084/m9.figshare.12986802.v1
title: Additional file 1 of The conversion of formate into purines stimulates mTORC1 leading to CAD-dependent activation of pyrimidine synthesis

description: Additional file 1. Phosphoproteomics quantifications of HAP1-ΔSHMT2 cells supplemented with formate and controls.
DOI: 10.6084/m9.figshare.12986811.v1
title: Additional file 2 of Use of a Plasmodium vivax genetic barcode for genomic surveillance and parasite tracking in Sri Lanka

description: Additional file 2. Details of the genotyped SNPs; SNP ID, chromosome position, gene ID and the genetic properties/effect.