cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8032708
title: Drosophila Larvae Tracking: movies of drosophila larvae communities

description: 33 movies of drosophila larvae communities

The task associated to this dataset is tracking multiple drosophila larvae. Such a tracking is required in the quest to elucidate the genetic basis of Drosophila's behaviour. This dataset was used in the article "Tracking indistinguishable translucent objects over time using weakly supervised structured learning". We provide the raw data, an intermediate segmentation of the foreground and the gold standard used in the evaluation of that tracking algorithm. 
description: Data Preparation

A sample 33 genetically different populations of 72 hours old Drosophila larvae were filmed for 5 minutes with a temporal resolution of 3.3 frames per second (1000 frames per movie in total). The movies have a spatial resolution of 135.3 μm/pixel, a size of 1400 × 1400 pixels, and contain on average 20 larvae. The data is segmented using the open source sofware ilastik, then merged regions are detected using the approach from [1].

The evaluation focuses on occlusion events that result from animals overlapping each other or from undersegmentation. We extract all subgraphs containing clusters of two or more larvae from the counting graph. These regions are sparse and correspond mostly to the occlusion of two individuals.

A human expert manually labeled each larva entering or leaving each occluded spatiotemporal region region in order to create the gold standard. 

Also, complete tracks are obtained by linking the tracklet of the larva before it enters the occluded region with one of the same larva after it leaves the occluded region. Tracklets are generated by linking connected componets in neighbouring frames which contain only one object (as inferred by algorithm [1]) and have more than 15 pixels of overlap. 
description: Data Format

The raw data, the segmentation and the user annotations are stored in hdf5 files. The golden standard for the tracks is saved a simple text files. Further details are given in README.
description: Usage of the Data

This data must be used for research purposes only.In case you would like to publish work based on this data, please cite the following article:

@inproceedings{fiaschi_14_tracking,author =    {Fiaschi, Luca and Diego, Ferran and Gregor, Konstantin  and Schiegg, Martin  and K{\"o}the, Ullrich and Zlatic, Marta  and Hamprecht, Fred Andreas },title =     {Tracking indistinguishable translucent objects over time using weakly supervised structured learning},booktitle = {IEEE Conference on Computer Vision and Pattern Recognition 2014},year = {2014},note = {Accept as Oral}}

 
description: Acknowledgements

The present data was acquired by Marta Zlatic (HHMI Janelia Farm) and Bruno Afonso (HHMI Janelia Farm). The processing of the data and the tracking algorithm are joint of Luca Fiaschi (HCI), Ferran Diego (HCI) , Konstantin Gregor (HCI), Martin Schiegg (HCI), Ullrich Koethe (HCI) and Fred Andreas Hamprecht (HCI).
DOI: 10.5281/zenodo.8032709
title: Drosophila Larvae Tracking: movies of drosophila larvae communities

description: 33 movies of drosophila larvae communities

The task associated to this dataset is tracking multiple drosophila larvae. Such a tracking is required in the quest to elucidate the genetic basis of Drosophila's behaviour. This dataset was used in the article "Tracking indistinguishable translucent objects over time using weakly supervised structured learning". We provide the raw data, an intermediate segmentation of the foreground and the gold standard used in the evaluation of that tracking algorithm. 
description: Data Preparation

A sample 33 genetically different populations of 72 hours old Drosophila larvae were filmed for 5 minutes with a temporal resolution of 3.3 frames per second (1000 frames per movie in total). The movies have a spatial resolution of 135.3 μm/pixel, a size of 1400 × 1400 pixels, and contain on average 20 larvae. The data is segmented using the open source sofware ilastik, then merged regions are detected using the approach from [1].

The evaluation focuses on occlusion events that result from animals overlapping each other or from undersegmentation. We extract all subgraphs containing clusters of two or more larvae from the counting graph. These regions are sparse and correspond mostly to the occlusion of two individuals.

A human expert manually labeled each larva entering or leaving each occluded spatiotemporal region region in order to create the gold standard. 

Also, complete tracks are obtained by linking the tracklet of the larva before it enters the occluded region with one of the same larva after it leaves the occluded region. Tracklets are generated by linking connected componets in neighbouring frames which contain only one object (as inferred by algorithm [1]) and have more than 15 pixels of overlap. 
description: Data Format

The raw data, the segmentation and the user annotations are stored in hdf5 files. The golden standard for the tracks is saved a simple text files. Further details are given in README.
description: Usage of the Data

This data must be used for research purposes only.In case you would like to publish work based on this data, please cite the following article:

@inproceedings{fiaschi_14_tracking,author =    {Fiaschi, Luca and Diego, Ferran and Gregor, Konstantin  and Schiegg, Martin  and K{\"o}the, Ullrich and Zlatic, Marta  and Hamprecht, Fred Andreas },title =     {Tracking indistinguishable translucent objects over time using weakly supervised structured learning},booktitle = {IEEE Conference on Computer Vision and Pattern Recognition 2014},year = {2014},note = {Accept as Oral}}

 
description: Acknowledgements

The present data was acquired by Marta Zlatic (HHMI Janelia Farm) and Bruno Afonso (HHMI Janelia Farm). The processing of the data and the tracking algorithm are joint of Luca Fiaschi (HCI), Ferran Diego (HCI) , Konstantin Gregor (HCI), Martin Schiegg (HCI), Ullrich Koethe (HCI) and Fred Andreas Hamprecht (HCI).
DOI: 10.18419/darus-4023/30
title: saccades.tab

description: Detected saccades of recording R05
DOI: 10.18419/darus-4023/31
title: blinks.tab

description: Detected blinks of recording R05
DOI: 10.18419/darus-4023/32
title: imu.tab

description: IMU samples of recording R05
DOI: 10.18419/darus-4023/33
title: video.mp4

description: World video of recording R06
DOI: 10.18419/darus-4023/34
title: gaze.tab

description: Gaze samples of recording R06
DOI: 10.18419/darus-4023/35
title: fixations.tab

description: Detected fixations of recording R06
DOI: 10.18419/darus-4023/36
title: saccades.tab

description: Detected saccades of recording R06
DOI: 10.18419/darus-4023/37
title: blinks.tab

description: Detected blinks of recording R06
DOI: 10.18419/darus-4023/38
title: imu.tab

description: IMU samples of recording R06
DOI: 10.18419/darus-4023/39
title: video.mp4

description: World video of recording R07
DOI: 10.18419/darus-4023/40
title: gaze.tab

description: Gaze samples of recording R07
DOI: 10.18419/darus-4023/41
title: fixations.tab

description: Detected fixations of recording R07
DOI: 10.18419/darus-4023/42
title: saccades.tab

description: Detected saccades of recording R07
DOI: 10.18419/darus-4023/43
title: blinks.tab

description: Detected blinks of recording R07
DOI: 10.18419/darus-4023/44
title: imu.tab

description: IMU samples of recording R07
DOI: 10.18419/darus-4023/45
title: video.mp4

description: World video of recording R08
DOI: 10.18419/darus-4023/46
title: gaze.tab

description: Gaze samples of recording R08
DOI: 10.18419/darus-4023/47
title: fixations.tab

description: Detected fixations of recording R08
DOI: 10.18419/darus-4023/48
title: saccades.tab

description: Detected saccades of recording R08
DOI: 10.18419/darus-4023/49
title: blinks.tab

description: Detected blinks of recording R08
DOI: 10.18419/darus-4023/50
title: imu.tab

description: IMU samples of recording R08
DOI: 10.18419/darus-4023/51
title: video.mp4

description: World video of recording R09
DOI: 10.18419/darus-4023/52
title: gaze.tab

description: Gaze samples of recording R09
DOI: 10.18419/darus-4023/53
title: fixations.tab

description: Detected fixations of recording R09
DOI: 10.18419/darus-4023/54
title: saccades.tab

description: Detected saccades of recording R09
DOI: 10.18419/darus-4023/55
title: blinks.tab

description: Detected blinks of recording R09
DOI: 10.18419/darus-4023/56
title: imu.tab

description: IMU samples of recording R09
DOI: 10.18419/darus-4023/57
title: video.mp4

description: World video of recording R10
DOI: 10.18419/darus-4023/58
title: gaze.tab

description: Gaze samples of recording R10
DOI: 10.18419/darus-4023/59
title: fixations.tab

description: Detected fixations of recording R10
DOI: 10.18419/darus-4023/60
title: saccades.tab

description: Detected saccades of recording R10
DOI: 10.18419/darus-4023/61
title: blinks.tab

description: Detected blinks of recording R10
DOI: 10.18419/darus-4023/62
title: imu.tab

description: IMU samples of recording R10
DOI: 10.18419/darus-4023/63
title: video.mp4

description: World video of recording R11
DOI: 10.18419/darus-4023/64
title: gaze.tab

description: Gaze samples of recording R11
DOI: 10.18419/darus-4023/65
title: fixations.tab

description: Detected fixations of recording R11
DOI: 10.18419/darus-4023/66
title: saccades.tab

description: Detected saccades of recording R11
DOI: 10.18419/darus-4023/67
title: blinks.tab

description: Detected blinks of recording R11
DOI: 10.18419/darus-4023/68
title: imu.tab

description: IMU samples of recording R11
DOI: 10.18419/darus-4023/69
title: video.mp4

description: World video of recording R12
DOI: 10.18419/darus-4023/70
title: gaze.tab

description: Gaze samples of recording R12
DOI: 10.18419/darus-4023/71
title: fixations.tab

description: Detected fixations of recording R12
DOI: 10.18419/darus-4023/72
title: saccades.tab

description: Detected saccades of recording R12
DOI: 10.18419/darus-4023/73
title: blinks.tab

description: Detected blinks of recording R12
DOI: 10.18419/darus-4023/74
title: imu.tab

description: IMU samples of recording R12
DOI: 10.18419/darus-4023/75
title: video.mp4

description: World video of recording R13
DOI: 10.18419/darus-4023/76
title: gaze.tab

description: Gaze samples of recording R13
DOI: 10.18419/darus-4023/77
title: fixations.tab

description: Detected fixations of recording R13
DOI: 10.18419/darus-4023/78
title: saccades.tab

description: Detected saccades of recording R13
DOI: 10.18419/darus-4023/79
title: blinks.tab

description: Detected blinks of recording R13
DOI: 10.18419/darus-4023/80
title: imu.tab

description: IMU samples of recording R13
DOI: 10.18419/darus-4023/81
title: video.mp4

description: World video of recording R14
DOI: 10.18419/darus-4023/82
title: gaze.tab

description: Gaze samples of recording R14
DOI: 10.18419/darus-4023/83
title: fixations.tab

description: Detected fixations of recording R14
DOI: 10.18419/darus-4023/84
title: saccades.tab

description: Detected saccades of recording R14
DOI: 10.18419/darus-4023/85
title: blinks.tab

description: Detected blinks of recording R14
DOI: 10.18419/darus-4023/86
title: imu.tab

description: IMU samples of recording R14
DOI: 10.18419/darus-4023/87
title: video.mp4

description: World video of recording R15
DOI: 10.18419/darus-4023/88
title: gaze.tab

description: Gaze samples of recording R15
DOI: 10.18419/darus-4023/89
title: fixations.tab

description: Detected fixations of recording R15
DOI: 10.18419/darus-4023/90
title: saccades.tab

description: Detected saccades of recording R15
DOI: 10.15468/dl.3d3gas
title: Occurrence Download

description: A dataset containing 11962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Geometry POLYGON((-4.60795 56.12909,-4.61246 56.13763,-4.62149 56.13812,-4.62161 56.14167,-4.61017 56.14143,-4.60819 56.1531,-4.61457 56.15689,-4.62275 56.16068,-4.63665 56.16008,-4.64333 56.15683,-4.6461 56.14841,-4.64098 56.14359,-4.62756 56.13595,-4.63298 56.12566,-4.62191 56.12283,-4.60795 56.12909))",
 "Month is one of (April, May)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera",
 "Year 1990-2024"
 ]
}

 The dataset includes 11962 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093078-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18419/darus-4023/91
title: blinks.tab

description: Detected blinks of recording R15
DOI: 10.18419/darus-4023/92
title: imu.tab

description: IMU samples of recording R15
DOI: 10.18419/darus-4023/93
title: video.mp4

description: World video of recording R16
DOI: 10.18419/darus-4023/94
title: gaze.tab

description: Gaze samples of recording R16
DOI: 10.18419/darus-4023/95
title: fixations.tab

description: Detected fixations of recording R16
DOI: 10.18419/darus-4023/96
title: saccades.tab

description: Detected saccades of recording R16
DOI: 10.18419/darus-4023/97
title: blinks.tab

description: Detected blinks of recording R16
DOI: 10.18419/darus-4023/98
title: imu.tab

description: IMU samples of recording R16
DOI: 10.18419/darus-4023/99
title: video.mp4

description: World video of recording R17
DOI: 10.18419/darus-4023/100
title: gaze.tab

description: Gaze samples of recording R17
DOI: 10.18419/darus-4023/101
title: fixations.tab

description: Detected fixations of recording R17
DOI: 10.18419/darus-4023/102
title: saccades.tab

description: Detected saccades of recording R17
DOI: 10.18419/darus-4023/103
title: blinks.tab

description: Detected blinks of recording R17
DOI: 10.18419/darus-4023/104
title: imu.tab

description: IMU samples of recording R17
DOI: 10.18419/darus-4023/105
title: video.mp4

description: World video of recording R18
DOI: 10.18419/darus-4023/106
title: gaze.tab

description: Gaze samples of recording R18
DOI: 10.18419/darus-4023/107
title: fixations.tab

description: Detected fixations of recording R18
DOI: 10.18419/darus-4023/108
title: saccades.tab

description: Detected saccades of recording R18
DOI: 10.18419/darus-4023/109
title: blinks.tab

description: Detected blinks of recording R18
DOI: 10.18419/darus-4023/110
title: imu.tab

description: IMU samples of recording R18
DOI: 10.18419/darus-4023/111
title: video.mp4

description: World video of recording R19
DOI: 10.18419/darus-4023/112
title: gaze.tab

description: Gaze samples of recording R19
DOI: 10.18419/darus-4023/113
title: fixations.tab

description: Detected fixations of recording R19
DOI: 10.18419/darus-4023/114
title: saccades.tab

description: Detected saccades of recording R19
DOI: 10.18419/darus-4023/115
title: blinks.tab

description: Detected blinks of recording R19
DOI: 10.18419/darus-4023/116
title: imu.tab

description: IMU samples of recording R19
DOI: 10.15468/dl.b5r8u8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galeichthys gronovii Valenciennes, 1840"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093080-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18419/darus-4023/117
title: video.mp4

description: World video of recording R20
DOI: 10.18419/darus-4023/118
title: gaze.tab

description: Gaze samples of recording R20
DOI: 10.18419/darus-4023/119
title: fixations.tab

description: Detected fixations of recording R20
DOI: 10.18419/darus-4023/120
title: saccades.tab

description: Detected saccades of recording R20
DOI: 10.18419/darus-4023/121
title: blinks.tab

description: Detected blinks of recording R20
DOI: 10.18419/darus-4023/122
title: imu.tab

description: IMU samples of recording R20
DOI: 10.18419/darus-4023/123
title: video.mp4

description: World video of recording R21
DOI: 10.3535/5kw-mnm-744
title: Salix humboldtiana Willd.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bg7-ee0-ajc
title: Salix humboldtiana Willd.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/2yl-r3m-vlr
title: Salix lapponum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/4sz-2h1-64x
title: Salix humilis Marshall

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/q2q-bp9-fzj
title: Salix humilis Marshall

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rp8-67x-l0y
title: Salix karelinii Turcz. ex Stschegl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/171-974-dt3
title: Salix humboldtiana Willd.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/2e2-ass-s5n
title: Salix L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/tfl-ed5-va4
title: Salix kazbekensis A. K. Skvortsov

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vcx-t3b-803
title: Salix kazbekensis A. K. Skvortsov

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/3zg-ymj-hzw
title: Salix L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/4e0-scq-1kn
title: Salix humilis Marshall

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/221-2kl-31t
title: Salix lapponum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/078-ccz-zzy
title: Salix kangensis Nakai

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/p53-d6n-xm9
title: Salix humilis Marshall

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/61s-r3h-ps7
title: Salix heterochroma Seemen

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/yal-dw7-fyz
title: Salix lapponum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/1m9-plt-sty
title: Salix L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/nvv-rgw-xt0
title: Salix karelinii Turcz. ex Stschegl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/1pz-qs1-es2
title: Salix heterandra Dode

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/trh-s7x-ral
title: Salix heterochroma Seemen

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hqm-vmz-drv
title: Salix lapponum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/n9b-37x-qp8
title: Salix lapponum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dc4-j0v-tr6
title: Salix phylicifolia var. hibernica (Rech. fil.) P. D. Sell

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/w7a-6lc-ffl
title: Salix laevigata Bebb

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dh1-qcd-vgc
title: Salix karelinii Turcz. ex Stschegl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ky9-7na-zrj
title: Salix karelinii Turcz. ex Stschegl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xyh-w02-qwl
title: Salix karelinii Turcz. ex Stschegl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/a7n-rmc-0r0
title: Salix laevigata Bebb

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pbj-ehc-xhd
title: Salix laevigata Bebb

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/599-bby-e91
title: Salix lanata L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/v51-ct6-jry
title: Salix laevigata Bebb

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rx4-gmv-1ta
title: Salix laevigata Bebb

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/k6x-7e2-a5x
title: Salix laevigata Bebb

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/x6q-g74-55p
title: Salix laevigata Bebb

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/gm8-ryr-dg4
title: Salix lapponum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/sm8-thl-bn7
title: Salix lapponum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.cvam2a
title: Occurrence Download

description: A dataset containing 930 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parachromis managuensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 930 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063922-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1ps-tgf-5hr
title: Salix L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ntm-rhf-39y
title: Salix lapponum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/p81-5q6-pqk
title: Salix lapponum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/r7a-a7x-2r2
title: Salix lapponum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5ka-hgf-r34
title: Salix laevigata Bebb

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/w84-dfy-zkw
title: Salix L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/2g1-z17-lw4
title: Salix herbacea L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9s1-pwg-9f6
title: Salix herbacea L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/b1x-n0x-ddb
title: Salix herbacea L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zcx-gnn-6cl
title: Salix herbacea L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ace-v4m-vyw
title: Salix humboldtiana Willd.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bkp-d8y-xsl
title: Salix humboldtiana Willd.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vjx-f1w-wdc
title: Salix hookeriana Barratt

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jta-r1b-6lh
title: Salix hookeriana Barratt

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/r9j-7ck-16s
title: Salix humboldtiana Willd.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/edq-p86-aa9
title: Salix humboldtiana Willd.

description: Digital Specimen for the physical specimen hosted at University of Graz.