cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9pf5df
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aconitum nagarum Stapf"
 ]
}

 The dataset includes 229 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014282-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7wmxtw
title: Occurrence Download

description: A dataset containing 3796 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iberodes linifolia (L.) Serrano, R.Carbajal & S.Ortiz"
 ]
}

 The dataset includes 3796 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027717-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aww2d6
title: Occurrence Download

description: A dataset containing 1779 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-109.47947 30.82519,-102.75505 30.82519,-102.75505 37.46837,-109.47947 37.46837,-109.47947 30.82519))",
 "HasGeospatialIssue is false",
 "TaxonKey is Ramosomyia violiceps (Gould, 1859)"
 ]
}

 The dataset includes 1779 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018020-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csk4e4
title: Occurrence Download

description: A dataset containing 8047 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Sus scrofa Linnaeus, 1758"
 ]
}

 The dataset includes 8047 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018019-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9eq87
title: Occurrence Download

description: A dataset containing 5686010 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Leiothlypis peregrina (A.Wilson, 1811), Limnothlypis swainsonii (Audubon, 1834), Protonotaria citrea (Boddaert, 1783), Mniotilta varia (Linnaeus, 1766), Vermivora cyanoptera Olson & Reveal, 2009, Vermivora chrysoptera (Linnaeus, 1766))"
 ]
}

 The dataset includes 5686010 records from 361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018013-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n5ug3c
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-101.48828 25.77393,-102.21529 24.63552,-100.00333 23.80187,-99.42533 24.76891,-99.33641 26.09164,-100.97487 26.28734,-101.48828 26.28734,-101.48828 25.77393))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ligustrum lucidum W.T.Aiton"
 ]
}

 The dataset includes 26 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018023-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25688718.v2
title: Experimental data of the paper "Marine Vegetation Analysis in Esefjorden, Norway through Hierarchical CNN-based Classification"

description: Experimental data for the paper "Marine Vegetation Analysis in Esefjorden, Norway through<br>Hierarchical CNN-based Classification."
DOI: 10.15468/dl.69aqan
title: Occurrence Download

description: A dataset containing 3168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-109.50258 31.2849,-102.68679 31.2849,-102.68679 38.55728,-109.50258 38.55728,-109.50258 31.2849))",
 "HasGeospatialIssue is false",
 "TaxonKey is Calothorax lucifer (Swainson, 1827)"
 ]
}

 The dataset includes 3168 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018024-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekg3ey
title: Occurrence Download

description: A dataset containing 309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Georgia",
 "TaxonKey is Myotis blythii (Tomes, 1857)"
 ]
}

 The dataset includes 309 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018025-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ghh2w
title: Occurrence Download

description: A dataset containing 16261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-109.22301 31.09513,-102.89244 31.09513,-102.89244 37.86052,-109.22301 37.86052,-109.22301 31.09513))",
 "HasGeospatialIssue is false",
 "TaxonKey is Eugenes fulgens (Swainson, 1827)"
 ]
}

 The dataset includes 16261 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018026-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bu576p
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mustela nigripes (Audubon & Bachman, 1851)",
 "Year 2000-2023"
 ]
}

 The dataset includes 52 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018028-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5kefc
title: Occurrence Download

description: A dataset containing 5581839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Geothlypis formosa (A.Wilson, 1811), Geothlypis philadelphia (A.Wilson, 1810), Geothlypis tolmiei (J.K.Townsend, 1839), Oporornis agilis (A.Wilson, 1812), Leiothlypis virginiae (S.F.Baird, 1860), Leiothlypis ruficapilla (A.Wilson, 1811), Leiothlypis luciae (J.G.Cooper, 1861), Leiothlypis crissalis (Salvin & Godman, 1889), Leiothlypis celata (Say, 1822))"
 ]
}

 The dataset includes 5581839 records from 312 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018015-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cdk95v
title: Occurrence Download

description: A dataset containing 27776 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Long-term monitoring of macroinvertebrates (abundance and distribution) in Doñana Wetlands 2004-2019"
 ]
}

 The dataset includes 27776 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018029-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkt72z
title: Occurrence Download

description: A dataset containing 73854 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY 4.0, CC-BY-NC 4.0)",
 "TaxonKey is Trachemys scripta elegans (Wied, 1838)"
 ]
}

 The dataset includes 73854 records from 365 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018027-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fqkrc
title: Occurrence Download

description: A dataset containing 7377968 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Geothlypis trichas (Linnaeus, 1766)"
 ]
}

 The dataset includes 7377968 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018018-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14026574
title: Predicting the physiological effects of multiple drugs using electronic health record

description: Supplementary Data 1. Optimized hyperparameters of the XGBoost classifiers for the 20 selected measurement items.

Supplementary Data 2. Information on 416 active pharmaceutical ingredients (APIs) used to develop the machine learning models for the 20 selected measurement items.

Supplementary Data 3. List of top 20 features with the highest feature importance for each XGBoost classifier according to the SHAP analysis (Fig. 4).

Supplementary Data 4. AUROC of the XGBoost classifiers for the 20 measurement items by using pairwise combinations of feature types as input, and using race-specific and sex-specific MIMIC-IV datasets.
DOI: 10.5281/zenodo.14026575
title: Predicting the physiological effects of multiple drugs using electronic health record

description: Supplementary Data 1. Optimized hyperparameters of the XGBoost classifiers for the 20 selected measurement items.

Supplementary Data 2. Information on 416 active pharmaceutical ingredients (APIs) used to develop the machine learning models for the 20 selected measurement items.

Supplementary Data 3. List of top 20 features with the highest feature importance for each XGBoost classifier according to the SHAP analysis (Fig. 4).

Supplementary Data 4. AUROC of the XGBoost classifiers for the 20 measurement items by using pairwise combinations of feature types as input, and using race-specific and sex-specific MIMIC-IV datasets.
DOI: 10.6084/m9.figshare.27390600
title: GPCR trajectories with no modulators

description: G-protein-coupled receptors (GPCRs) make up the largest superfamily of human membrane proteins and represent primary targets of ∼1/3 of currently marketed drugs. Allosteric modulators have emerged as more selective drug candidates compared with orthosteric agonists and antagonists. However, many X-ray and cryo-EM structures of GPCRs resolved so far exhibit negligible differences upon the binding of positive and negative allosteric modulators (PAMs and NAMs). The mechanism of dynamic allosteric modulation in GPCRs remains unclear. In this work, we have systematically mapped dynamic changes in free energy landscapes of GPCRs upon binding of allosteric modulators using the Gaussian accelerated molecular dynamics (GaMD), deep learning (DL), and free energy prOfiling Workflow (GLOW). GaMD simulations were performed for a total of 66 μs on 44 GPCR systems in the presence and absence of the modulator. DL and free energy calculations revealed significantly reduced dynamic fluctuations and conformational space of GPCRs upon modulator binding. While the modulator-free GPCRs often sampled multiple low-energy conformational states, the NAMs and PAMs confined the inactive and active agonist-G-protein-bound GPCRs, respectively, to mostly only one specific conformation for signaling. Such cooperative effects were significantly reduced for binding of the selective modulators to “non-cognate” receptor subtypes. Therefore, GPCR allostery exhibits a dynamic “conformational selection” mechanism. In the absence of available modulator-bound structures as for most current GPCRs, it is critical to use a structural ensemble of representative GPCR conformations rather than a single structure for compound docking (“ensemble docking”), which will potentially improve structure-based design of novel allosteric drugs of GPCRs.
DOI: 10.6084/m9.figshare.27390600.v1
title: GPCR trajectories with no modulators

description: G-protein-coupled receptors (GPCRs) make up the largest superfamily of human membrane proteins and represent primary targets of ∼1/3 of currently marketed drugs. Allosteric modulators have emerged as more selective drug candidates compared with orthosteric agonists and antagonists. However, many X-ray and cryo-EM structures of GPCRs resolved so far exhibit negligible differences upon the binding of positive and negative allosteric modulators (PAMs and NAMs). The mechanism of dynamic allosteric modulation in GPCRs remains unclear. In this work, we have systematically mapped dynamic changes in free energy landscapes of GPCRs upon binding of allosteric modulators using the Gaussian accelerated molecular dynamics (GaMD), deep learning (DL), and free energy prOfiling Workflow (GLOW). GaMD simulations were performed for a total of 66 μs on 44 GPCR systems in the presence and absence of the modulator. DL and free energy calculations revealed significantly reduced dynamic fluctuations and conformational space of GPCRs upon modulator binding. While the modulator-free GPCRs often sampled multiple low-energy conformational states, the NAMs and PAMs confined the inactive and active agonist-G-protein-bound GPCRs, respectively, to mostly only one specific conformation for signaling. Such cooperative effects were significantly reduced for binding of the selective modulators to “non-cognate” receptor subtypes. Therefore, GPCR allostery exhibits a dynamic “conformational selection” mechanism. In the absence of available modulator-bound structures as for most current GPCRs, it is critical to use a structural ensemble of representative GPCR conformations rather than a single structure for compound docking (“ensemble docking”), which will potentially improve structure-based design of novel allosteric drugs of GPCRs.
DOI: 10.15468/dl.ttcd53
title: Occurrence Download

description: A dataset containing 28337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-109.63797 31.26057,-102.90133 31.26057,-102.90133 38.23301,-109.63797 38.23301,-109.63797 31.26057))",
 "HasGeospatialIssue is false",
 "TaxonKey is Lampornis clemenciae (R.Lesson, 1830)"
 ]
}

 The dataset includes 28337 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018030-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ar2nkd
title: Occurrence Download

description: A dataset containing 524493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material citation, Specimen, Living Specimen)",
 "Continent is South America",
 "Country is one of (Colombia, Ecuador, Peru, Venezuela (Bolivarian Republic of), Bolivia (Plurinational State of))",
 "OccurrenceStatus is Present",
 "TaxonKey is Coleoptera"
 ]
}

 The dataset includes 524493 records from 388 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018022-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uexhr7
title: Occurrence Download

description: A dataset containing 98513 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hippophae rhamnoides L."
 ]
}

 The dataset includes 98513 records from 598 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077410-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xyysjt
title: Occurrence Download

description: A dataset listing the 265039 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidoptera"
 ]
}

 The dataset's 265039 records were derived from 6255 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059880-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cepyyc
title: Occurrence Download

description: A dataset containing 12055 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cornus alba",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 12055 records from 315 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007330-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29930693.v1
title: Iridium Photosensitizers Immobilized on Metal-Organic Layers Lead to Enhanced Enantioselectivity in NiIr Dual Photocatalysis

description: The Ir/Ni dual-catalytic system plays a crucial role in asymmetric photocatalysis for synthesizing enantioenriched compounds. However, challenges such as the high cost and limited sustainability of Ir complexes hinder its broader application. In this study, we designed three metal-organic layers (MOLs) and immobilized functionalized Ir photosensitizers (Ir-PSs) on their surfaces via coordination exchange or click chemistry, yielding six MOL-PS hybrids. Chiral Ni complexes also adhere to the MOL surface through coordination bonds. These dual catalysts exhibited superior enantioselectivity (up to 99% ee) in the asymmetric acylation of saturated N-heterocycles at α-C(sp³)H bonds. The enhanced enantioselectivity likely arises from steric change of chiral Ni complexes coordinating with hydroxyl or amine groups on the MOLs, which also form ion pairs with Ir-PSs. This strategy demonstrates broad applicability across diverse chiral ligands and substrates, underscoring the potential of using MOLs in asymmetric photocatalysis to enhance both enantioselectivity and catalyst reusability.
DOI: 10.15468/dl.23b67y
title: Occurrence Download

description: A dataset containing 169309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (China, Myanmar)",
 "DatasetKey is one of (Plant Specimen in Yunnan, China from Herbarium (PE),Institute of Botany, Chinese Academy of Sciences, 2023 Contributions of Plant Specimen Data inside China, CAS Botany (BOT), Some Plant Specimens from KUN, IBSC, NAS Herbarium in China from 1900 to 1950, Edinburgh (E) Herbarium Specimens, International Barcode of Life project (iBOL), Vascular plants of south-central China, Harvard University Herbaria: All Records)",
 "Geometry POLYGON((97.5 24.67,99.5 24.67,99.5 28.5,97.5 28.5,97.5 24.67))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 169309 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007316-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4evjq
title: Occurrence Download

description: A dataset containing 1799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Scorzoneroides pyrenaica",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1799 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007332-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ve7hhq
title: Occurrence Download

description: A dataset containing 23124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "HasCoordinate is true",
 "Year is 1940"
 ]
}

 The dataset includes 23124 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007331-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbewtv
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hedera maroccana",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007333-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20350/digitalcsic/17576
title: Dataset for the article “Postprandial metabolism of a reduced-fat meat product with added silicon from diatomaceous earth. A pilot randomized controlled four-way assay in humans”

description: Baseline characteristics of the participants, body composition at the beginning and the end of the trial (visits 1 and 4), effect of the four pâtés on postprandial parameters.
DOI: 10.20350/digitalcsic/17577
title: Colloidal Chips-in-Inks for Ubiquitous Integration on Paper and Textiles

description: Raw data obtained for the paper: " Colloidal Chips-in-Inks for Ubiquitous Integration on Paper and Textiles”
DOI: 10.15468/dl.2afay5
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Secale sylvestre",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 54 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007337-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zyeka4
title: Occurrence Download

description: A dataset containing 485 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ilex crenata",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 485 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007339-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.