cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13220711.v1
title: Supplementary Material for: Phenotypic Characteristics and Copy Number Variants in a Cohort of Colombian Patients with VACTERL Association

description: VACTERL association (OMIM 192350) is a heterogeneous clinical condition characterized by congenital structural defects that include at least 3 of the following features: vertebral abnormalities, anal atresia, heart defects, tracheoesophageal fistula, renal malformations, and limb defects. The nonrandom occurrence of these malformations and some familial cases suggest a possible association with genetic factors such as chromosomal alterations, gene mutations, and inherited syndromes such as Fanconi anemia (FA). In this study, the clinical phenotype and its relationship with the presence of chromosomal abnormalities and FA were evaluated in 18 patients with VACTERL association. For this, a G-banded karyotype, array-comparative genomic hybridization, and chromosomal fragility test for FA were performed. All patients (10 female and 8 male) showed a broad clinical spectrum: 13 (72.2%) had vertebral abnormalities, 8 (44.4%) had anal atresia, 14 (77.8%) had heart defects, 8 (44.4%) had esophageal atresia, 10 (55.6%) had renal abnormalities, and 10 (55.6%) had limb defects. Chromosomal abnormalities and FA were ruled out. In 2 cases, the finding of microalterations, namely del(15)(q11.2) and dup(17)(q12), explained the phenotype; in 8 cases, copy number variations were classified as variants of unknown significance and as not yet described in VACTERL. These variants comprise genes related to important cellular functions and embryonic development.
DOI: 10.17632/dsfp4tbmzh
title: Floating Solar Power Plants Potential in Indonesia

description: This article is a unique collaboration of various universities in Indonesia, specifically on the innovative concept of floating solar energy. Indonesia is leading the way in several renewable energy projects, including the largest floating solar energy project in ASEAN, which is a testament to the country's forward-thinking approach.
Developer: PT Pembangkoit Jawa-Bali Masdar Solar Energy (PMSE)
Scheme: PPA-25 years TOP (BOOT)
Capacity: 145 MWac
Investment: 129 million USD (Source: plnnusantarapower.co.id)
Findings: All projects, only one—the Cirata Dam floating solar power plant—is complete and operational. As the largest floating PLTS in Southeast Asia, valued at IDR 1.7 trillion, the Cirata project is a significant addition to Indonesia’s West Java region's sustainable energy infrastructure. Operated by PLN, the State Electricity Company (Persero), the Cirata PLTS is expected to reduce carbon emissions by over 200,000 tons per year and generate clean energy equivalent to 245 million kWh annually, powering more than 50,000 homes. The current electricity rate from these solar power plants is $5.8 per kilowatt-hour (kWh), considered reasonable. Many international companies have extensively utilized solar power plants across Indonesia. However, investors are increasingly favoring floating photovoltaic solar panels over land-based installations due to challenges with land acquisition, which leads to higher production costs and pressures on investors.
DOI: 10.6084/m9.figshare.21266103.v1
title: 658 final data.xlsx

description: This is the dataset used for the proactivity as DV paper
DOI: 10.6084/m9.figshare.21482397.v1
title: IED Incidence and probs of the IEEE systems

description: Incidence of bus-IED-line for the IEEE RTS 24-bus and 57-bus systems <br> Intrusion probabilities of the substations for the IEEE RTS 24-bus and 57-bus systems
DOI: 10.6084/m9.figshare.23566812.v1
title: Supplementary Material for: Analysis of Concomitant Medications Prescribed with Antipsychotics to Patients with Dementia

description: <b><i>Introduction:</i></b> Antipsychotics are still commonly prescribed to patients with dementia, despite the many issues that have been identified. This study aimed to quantify antipsychotic prescription in patients with dementia and the types of concomitant medications prescribed with antipsychotics. <b><i>Methods:</i></b> A total of 1,512 outpatients with dementia who visited our department between April 1, 2013 and March 31, 2021, were included in this study. Demographic data, dementia subtypes, and regular medication use at the time of the first outpatient visit were investigated. The association between antipsychotic prescriptions and referral sources, dementia subtypes, antidementia drug use, polypharmacy, and prescription of potentially inappropriate medications (PIMs) was evaluated. <b><i>Results:</i></b> The antipsychotic prescription rate for patients with dementia was 11.5%. In a comparison of dementia subtypes, the antipsychotic prescription rate was significantly higher for patients with dementia with Lewy bodies (DLB) than for those with all other dementia subtypes. In terms of concomitant medications, patients taking antidementia drugs, polypharmacy, and PIMs were more likely to receive antipsychotic prescriptions than those who were not taking these medications. Multivariate logistic regression analysis showed that referrals from psychiatric institutions, DLB, N-methyl-d-aspartate (NMDA) receptor antagonists, polypharmacy, and benzodiazepine were associated with antipsychotic prescriptions. <b><i>Conclusions:</i></b> Referrals from psychiatric institutions, DLB, NMDA receptor antagonist, polypharmacy, and benzodiazepine were associated with antipsychotic prescriptions for patients with dementia. To optimise prescription of antipsychotics, it is necessary to improve cooperation between local and specialised medical institutions for accurate diagnosis, evaluate the effects of concomitant medication administration, and solve the prescribing cascade.
DOI: 10.6084/m9.figshare.21863142.v1
title: Supplementary Material for: National Weekly SARS-CoV-2 RT-PCR Screening of All Workers in Long-Term Care Facilities Associated with Decrease in Resident Mortality Rate

description: Introduction Outbreaks of COVID-19 in long-term care facilities (LTCFs) have resulted mainly from disease transmission by asymptomatic health care workers. This study examines whether routine screening tests carried out on health care workers can help in reducing COVID-19 outbreaks, morbidity, and mortality of LTCF residents. Methods The study followed a weekly, nationwide, government-funded screening program of LTCF personnel for SARS-CoV-2, by using reverse transcription polymerase chain reaction as the main testing technology. It included all residents and employees in Israeli LTCFs who were screened weekly during the second wave of COVID-19, during the time period between July 13, 2020, and November 21, 2020. Results During the study period, 1,107 LTCFs were screened on a weekly basis, including 62,159 HCWs and 100,046 residents. The program screened a median of 55,282 (Range 16,249, min 45,910, max 62,159) employees per week, 0.05-1.5% of which were positive for SARS-CoV-2. LTCF mortality in the first wave accounted for 45.3% of all COVID-19 deaths recorded nationally (252 of 556), and in the second wave this ratio was reduced to 30.3% (709 of 2,337) representing a reduction of 33.8% in expected mortality (P&lt;0.001). A significant reduction was detected also in hospitalization rate (13.59% vs. 11.41%, p&lt;0.001) and elder (≥75 years-old) mortality rate (52.89% vs. 41.42%, p&lt;0.001). 214 outbreaks in the second wave were avoided by early identification of SARS-CoV-2 positive HCWs and successful prevention of subsequent infections in the facility. Conclusions and relevance Routine weekly SARS-CoV-2 RT-PCR testing of LTCF employees was associated with reduced national LTCF residents’ hospitalizations and mortality rate.
DOI: 10.6084/m9.figshare.2242447.v1
title: Data package from: Evaluating the effects of pollinator-mediated interactions using pollen transfer networks: evidence of widespread facilitation in south Andean plant communities (Tur et al. 2016)

description: This is a fileset containing data and R scripts for analyses published in:<br><br>C. Tur, A. Sáez, A. Traveset & M.A. Aizen (2016) Evaluating the effects of pollinator-mediated interactions using pollen transfer networks: evidence of widespread facilitation in south Andean plant communities. Ecology Letters. doi: 10.1111/ele.12594<br><br>Files included in the data package are:<br><br>(1) Data_Tur_et_al_2016_EcolLet.txt. File with data of pollen deposition on stigmas of high-Andean species. The dataframe contains the following columns:<br> <br> code -&gt; sample ID<br> altitude -&gt; altitudinal community (1600, 1800, 2000 m)<br> date -&gt; sampling date<br> plant -&gt; plant ID<br> stigma -&gt; number identifying the stigma sampled<br> receptor -&gt; stigma's plant species<br> donor -&gt; pollen's plant species <br> germ -&gt; number of germinated pollen grains on stigma<br> non.germ -&gt; number of non-germinated pollen grains on stigma<br> total -&gt; number of total pollen grains on stigma<br><br>(2) Species_info_Tur_et_al_2016_EcolLet.txt. Table with information on complete species names and plant families matching species abbreviations used in the previous data file.<br><br>(3) Tur_et_al_2016_EcolLet_script.r. R script to perform the analyses included in Tur et al. 2016<br><br>When using these data please cite:<br>C. Tur, A. Sáez, A. Traveset & M.A. Aizen (2016) Evaluating the effects of pollinator-mediated interactions using pollen transfer networks: evidence of widespread facilitation in south Andean plant communities. Ecology Letters. doi: 10.1111/ele.12594.<br><br>For further information or questions please contact to: cris.tur.espinosa@gmail.com<br>
DOI: 10.17632/9ghryvmgmd
title: Data for: Development of functionalities for improved storage modelling in OSeMOSYS

description: Model provided as supplementary material for the article "Development of functionalities for improved storage modelling in OSeMOSYS"
DOI: 10.6084/m9.figshare.3117205.v1
title: Coffeyetal2016_EEGdata.zip

description: This file contains EEG data and related behavioural variables for the article:<br><br>Coffey et al. Individual differences in the frequency-following response: Relation to pitch perception. PLoS ONE. 2016<br><br><br>
DOI: 10.6084/m9.figshare.3412336.v1
title: Grid Computing

description: Grid computing is a new generation of distributedcomputing. The target of grid paradigm is how to constructstrong processing power and storage resources by manysmall and weak resources.<br>Gird computing is a mesh of interconnected resourcesworldwide which constructs massive powerful capabilities.The user of the grid has the ability to use any (or many) ofthese interconnected resources in the grid to solve hisproblems, which cannot be solved by locally ownedresources capabilities.
DOI: 10.6084/m9.figshare.11467299.v1
title: Dataset Legend.docx

description: Dataset Legend for the Dataset of "Individual differences in impulsivity and need for cognition as potential risk or resilience factors of diabetes self-management and glycemic control"<br>
DOI: 10.6084/m9.figshare.9963311.v6
title: Amplified transboundary transport of haze by aerosol-boundary layer interaction in China

description: Datasets that support the findings of the study "Amplified transboundary transport of haze by aerosol-boundary layer interaction in China"
DOI: 10.15468/dl.j3emxh
title: Occurrence Download

description: A dataset containing 3868 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anorthoa munda (Denis & Schiffermüller), 1775"
 ]
}

 The dataset includes 3868 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009419-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.5127664.v1
title: Supplementary Material for: A Sequence Kernel Association Test for Dichotomous Traits in Family Samples under a Generalized Linear Mixed Model

description: <b><i>Objective:</i></b> The existing methods for identifying multiple rare variants underlying complex diseases in family samples are underpowered. Therefore, we aim to develop a new set-based method for an association study of dichotomous traits in family samples. <b><i>Methods:</i></b> We introduce a framework for testing the association of genetic variants with diseases in family samples based on a generalized linear mixed model. Our proposed method is based on a kernel machine regression and can be viewed as an extension of the sequence kernel association test (SKAT and famSKAT) for application to family data with dichotomous traits (F-SKAT). <b><i>Results:</i></b> Our simulation studies show that the original SKAT has inflated type I error rates when applied directly to family data. By contrast, our proposed F-SKAT has the correct type I error rate. Furthermore, in all of the considered scenarios, F-SKAT, which uses all family data, has higher power than both SKAT, which uses only unrelated individuals from the family data, and another method, which uses all family data. <b><i>Conclusion:</i></b> We propose a set-based association test that can be used to analyze family data with dichotomous phenotypes while handling genetic variants with the same or opposite directions of effects as well as any types of family relationships.
DOI: 10.6084/m9.figshare.28601348.v2
title: Figure 1

description: Raw data values
DOI: 10.17632/bc8yr2xkp7
title: Cloned bovine placenta proteome

description: Data was generated to analyze the proteome of near-term bovine cotyledons (10.17632/bc4y39gy8w.1) in comparison with term cloned delivery pregnancies (10.17632/bc8yr2xkp7.1). Also, the near term bovine cotyledons proteome was compared with decellularized counterpart (10.17632/4yjygxyy6x.1).
DOI: 10.6084/m9.figshare.16691485.v1
title: BraTIPs

description: TE insertions in 524 <i>Brassica rapa</i> genomes.
DOI: 10.17632/pbtz4d8gg6
title: Assessing the cytotoxicity and apoptosis-inducing ability of solar irradiated Salmonella Typhimurium in RAW264.7 cell line in vitro

description: The consumption of solar disinfected (SODIS) water has reduced diarrhoeal incidences in resource-poor regions of the world. Thus, this study assessed the effects of solar radiation on the viability and on three virulence characteristics (invasion, cytotoxicity, and apoptosis) of S. Typhimurium on macrophages. Samples of S. Typhimurium were treated in three ways: (i) suspended in water and exposed to solar ultra-violet radiation (SUVR), (ii) exposed to SUVR but in a non- transparent flask, and (iii) heat and chemically attenuated by treating the bacteria with 0.5% phenol at 65°C for one hour. Salmonella Typhimurium samples were pipetted out from the three treatments after 4 and 8 h and used to infect macrophage RAW264.7 cells. The intracellular growth of S. Typhimurium was assessed by using the gentamicin protection assay. Cytotoxicity assays were carried out using the Lactate Dehydrogenase Assay (LDH). Apoptosis of infected macrophages was analysed using flow cytometry. The results showed that S. Typhimurium was inactivated after 4 and 8 h of solar irradiation. The solar irradiated S. Typhimurium exhibited no intracellular growth, and produced lower cytotoxicity and fewer necrotic cells in RAW 264.7 cells. The non-irradiated S. Typhimurium survived within the macrophages, were highly toxic to the cells and caused a significant increase (p&lt;0.01) in necrotic cells when compared to the solar irradiated samples. In conclusion, solar irradiated S. Typhimurium impacts the viability and virulence properties especially the survival of RAW264.7 cells and also reduces their ability to induce cytotoxicity and necrotic cell death in the macrophages.
DOI: 10.25403/upresearchdata.23694477.v1
title: Exploration of fluid intelligence using Raven’s Coloured Progressive Matrices (RPM) in contexts where the quality of education may influence the assessment’s results

description: This data set provides information on desktop searches conducted on systematic review to investigate the available knowledge that explores fluid intelligence using Raven’s Coloured Progressive Matrices in contexts where the quality of education may influence the assessment’s results.  All these studies were conducted in Africa, two of which were conducted in South Africa.
DOI: 10.6084/m9.figshare.24125112.v1
title: Supplementary Material for: Catheter-related bloodstream infection in hemodialysis patient due to Atlantibacter hermannii

description: Atlantibacter hermannii, previously known as Escherichia hermannii is a rare causative agent of human infections. Several reports testify that the most frequently infected patients are immunosuppressed, especially those undergoing hemodialysis. A 34-year-old man with an end-stage renal disease complained of chills, fever and general fatigue at the end of a regular hemodialysis session. The echocardiographic examination showed a vegetation located on the dialysis catheter in the right atrium. Empirical therapy was initiated with intravenous gentamicin and after the isolation of the agent, the treatment was continued with intravenous imipenem/cilastatin. The blood cultures and the tip of the replaced catheter were positive for A. hermannii, identified by Vitek 2 Compact. Verification of the automated identification was performed using 16S sequencing. The 16S sequence product was used to query the NCBI bacterial database and revealed 99.75% identity to that of A. hermannii strain CIP 103176 16S ribosomal RNA in the NCBI GenBank database. The antimicrobial susceptibility results revealed resistance to aminopenicillins and susceptibility to all other tested antimicrobials. To our knowledge, this is the first report of catheter-related vegetation with echocardiographic confirmation and the successful eradication of A. hermannii infection in a patient undergoing hemodialysis with imipenem/cilastatin.
DOI: 10.6084/m9.figshare.28789949.v1
title: CODERData2.1.0

description: Cancer Organoid Data
DOI: 10.17632/27khnmwmt3
title: The Chlamydia-related Waddlia chondrophila encodes functional type II toxin-antitoxin systems

description: Original, unprocessed data (immunoblots, efficiency of plating assays and microscopy images) corresponding to figures presented in the paper.
DOI: 10.6084/m9.figshare.1080767.v1
title: Clinico-laboratory values of an adult patient with Kawasaki disease in Europe

description: Kawasaki disease is an acute febrile syndrome that mainly hurts the skin, mucosa and lymph nodes, occasionally causing coronary artery aneurysms if left untreated. It occurs most often in Japan and Korea, affecting infants and small children, whereas few adult cases have been reported. Its pathogenesis remains mostly unknown. This dataset consists of clinico-laboratory values of a case of adult Kawasaki disease in Europe.<br><br>When citing this dataset, please also cite the following paper:<br>Kontopoulou T, Kontopoulos DG, Vaidakis E, Mousoulis GP: <strong>Adult Kawasaki disease in a European patient: a case report and review of the literature.</strong> <em>Journal of Medical Case Reports</em> 2015, 9:75, http://dx.doi.org/10.1186/s13256-015-0516-9.
DOI: 10.6084/m9.figshare.26018272.v1
title: Supplementary Information for Cyclobutane-Linked Nanothreads Synthesized by Thermal and Photochemically-Mediated Polymerizations of Cyclohexadiene<b> </b>

description: M06-2X/6-31+G(d,p) output files for polymerization cycloaddition reaction for manuscript in preparation.
DOI: 10.6084/m9.figshare.6445190.v2
title: campylobacter_mixtures_2.tgz

description: Campylobacter mixture samples from the mSWEEP paper, part 2 of 2.
DOI: 10.6084/m9.figshare.26062624.v1
title: Sample data for BRT model pipeline

description: A data set to be upload to sample code for BRT model initiation<br>
DOI: 10.17632/7dxydjw9gs
title: R code for article "Combining hierarchical distribution models with dispersal simulations to predict the spread of invasive plant species"

description: R code including global and regional SDMs as well as dispersal models.
DOI: 10.6084/m9.figshare.21376140.v1
title: Does Scale or Method Matter for Conservation? Application of Directional and Omnidirectional Connectivity Models in Spatial Prioritizations

description: We modeled the connectivity of northern bobwhite (Colinus virginianus), North American river otter (Lontra canadensis) and black bear (Ursus americanus) three species with varying ecological requirements, through the Congaree Biosphere Region, South Carolina, USA. We modeled habitat suitability for each species using boosted regression trees and converted these results into resistance layers for the connectivity analyses. We compared models for each species at multistate regional and local extents using directional and omnidirectional circuit theory approaches. We then used the results from each modelling combination as conservation goals for three different SCPs to determine how connectivity modelling decisions may influence geographic conservation decisions.
DOI: 10.6084/m9.figshare.4788802.v1
title: Predicting Membrane Protein Types Dataset2

description: Predicting Membrane Protein Types
DOI: 10.6084/m9.figshare.5127748.v1
title: Supplementary Material for: Low-Frequency Electromagnetic Field Exposure Enhances Extracellular Trap Formation by Human Neutrophils through the NADPH Pathway

description: Low-frequency (LF) electromagnetic fields (EMFs) are abundantly present in modern society, and the potential biological consequences of exposure to these fields are under intense debate. Immune cells are suggested as possible target cells, though a clear mechanism is lacking. Considering their crucial role in innate immune activation, we selected an ex vivo exposure set-up with human neutrophils to investigate a possible correlation between neutrophil extracellular trap (NET) formation and LF EMF exposure. Our study shows that formation of NETs is enhanced by LF EMF exposure<i>. </i>Enhanced NET formation leads to increased antimicrobial properties as well as damage to surrounding cells. We found that LF-EMF-induced NET formation is dependent on the NADPH oxidase pathway and production of reactive oxygen species. Additionally, LF EMF exposure does not influence autophagy and PAD4 activity. Our study provides a mechanism by which exposure to LF EMFs could influence the innate immune system.
DOI: 10.17632/j8tvmkpmwf
title: Marine Composites SEM

description: Scanning electron microscope images of epoxy/glass and polyester/glass composite coupons exposed to real marine environment for 6 and 12 months
DOI: 10.6084/m9.figshare.21444963.v2
title: Results fasta files for "A systematic mapping of the genomic and proteomic variation associated with monogenic diabetes"

description: Fasta files contain protein sequences for the project "A systematic mapping of the genomic and proteomic variation associated with monogenic diabetes"
DOI: 10.6084/m9.figshare.21626600.v1
title: Raw data

description: Raw data for paper: <strong>Effects of cannabinoids in Parkinson’s disease</strong> <strong>animal models:</strong> <strong>a systematic review and meta-analysis</strong>
DOI: 10.6084/m9.figshare.15169593.v1
title: Cross-domain Systematic Literature Review dataset

description: Systematic Literature Review (Cross-domain) dataset; includes primary texts corpus, criteria screening and mappings.<br>
DOI: 10.6084/m9.figshare.27173847.v1
title: Supplementary Material for: A case of Conjunctival Melanoma presenting as a Squamous Cell Carcinoma

description: Conjunctival melanoma (CM) is a rare but potentially lethal ocular malignancy that arises from melanocytes in the conjunctiva. Its clinical presentation can mimic other more common conjunctival lesions, such as squamous cell carcinoma (SCC), leading to diagnostic challenges. We present a case of conjunctival melanoma initially misdiagnosed as conjunctival SCC due to overlapping clinical features.