cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/jc469bc5mv
title: Data for: Molecular biomarker responses in the freshwater mussel Anodonta anatina exposed to an industrial wastewater effluent

description: Data for the paper 'Molecular biomarker responses in the freshwater mussel Anodonta anatina exposed to an industrial wastewater effluent'. The data include our experimental data as well as literature datasets used for toxic unit (TU) calculations.

ABSTRACT: Using a selection of molecular biomarkers, we evaluated responses in freshwater mussels (Anodonta anatina) exposed to effluent from an industrial wastewater treatment facility. The aims of this work were to (1) assess biomarkers of general toxicity under sublethal exposure to an anthropogenic mixture of chemicals, represented by an arbitrary effluent, and (2) evaluate the potential of A. anatina as a bioindicator of pollution. Adult mussels (n = in total 32; 24 males and 8 females) were exposed (96 h) in the laboratory to a fixed dilution of effluent or to a control treatment of standardized freshwater. Metal concentrations were in general higher in the effluent, by an order of magnitude or more, compared to the control. Toxic unit estimates were used as proxies of chemical stress, and Cu, Ni, and Zn were identified as potential major contributors (Cu> Ni > Zn). Six transcriptional (cat, gst, hsp70, hsp90, mt, sod) and two biochemical (AChE, GST) biomarkers were analyzed in two tissues, gills, and digestive glands. Out of the 16 responses (eight biomarkers × two tissues), 14 effect sizes were small (within ± 28 % of control) and differences non-significant (p > 0.05). Results did however show that (1) AChE activity increased by 40% in gills of exposed mussels compared to control, (2) hsp90 expression was 100% higher in exposed female gills compared to control, and (3) three marker signals (AChE in both tissues, and hsp70 in gills) differed between sexes, independent of treatment. Results highlight a need for further investigation of molecular biomarker variability and robustness in A. anatina.

Full reference:
Ekelund Ugge, G.M.O, Jonsson, A. & Berglund, O. Molecular biomarker responses in the freshwater mussel Anodonta anatina exposed to an industrial wastewater effluent. Environ Sci Pollut Res 29, 2158–2170 (2022).
DOI: 10.6084/m9.figshare.23599101.v1
title: Clinostat data

description: These files contain data about acceleration measure and vibration measurements of clinostat, material property measurements, and cell experiment analysis.
DOI: 10.6084/m9.figshare.25714068.v3
title: Example dataset for "Elucidating subcellular architecture and dynamics at isotropic 100 nm resolution with 4Pi-SIM"

description: These are representative test data for the paper "Elucidating subcellular architecture and dynamics at isotropic 100 nm resolution with 4Pi-SIM ".1. ‘Fig5a_ER_4Pi_SIM_A.tif’ and ‘Fig5a_ER_4Pi_SIM_B.tif’ are raw data for the Fig. 5a, corresponding to the 86th time point.2. ‘6BOTF.tif’ is used for parameter estimation in OPLD.3. In the 'OTF' folder, the following files are derived from our generated 4Pi-SIM OTF library: '4PSOTF_OPLD_0_real.tif', '4PSOTF_OPLD_0_imag.tif', '4PSOTF_OPLD_20_real.tif', '4PSOTF_OPLD_20_imag.tif', '4PSOTF_OPLD_180_real.tif', and '4PSOTF_OPLD_180_imag.tif'. These files, along with 'Mask_4PS.tif', are used for Wiener reconstruction.4. In the folder "SIM Result_example," the files contain reconstruction results of the test data, provided for reference.Please refer to the Methods and flowchart in Extended Data Fig. 6 for a detailed reconstruction process.
DOI: 10.6084/m9.figshare.28204532.v2
title: Transcriptomic profiling after B-cell depletion reveals central and peripheral immune cell changes in multiple sclerosis

description: single cell RNAseq dataset from MS patients immune cells:PBMC: paired data from 18 patients pre/post anti-CD20 treatmentCSF: paired data from 5 patients pre/post anti-CD20 treatment, as well as 6 previously published healthy controls from Pappalardo et al.See <i>metadata_dictionary</i> file for details about the objects structures.Source code:<i>Ocrevus_manuscript.zip</i> is a clone of the GitHub repository
DOI: 10.6084/m9.figshare.28821059.v1
title: Corrected Intensity profiles of LG beams with varying azimuthal index

description: Corrected LG intensity profiles
DOI: 10.17632/p7rsc48hpt
title: Metabolomics of scorpionate-exposed cells - part 3

description: Full untargeted metabolomics raw data (Bruker Impact II QqTOF) from B16, HaCaT and HCT116 cells exposed to FeCl2Tpm (1) or CoTpm2(OH)2 (2) scorpionate complexes. Manuscript in press.
DOI: 10.17632/x79wx5fz6b
title: JND-IR image dataset

description: Dataset of compressed images in the infrared (IR) part of the electromagnetic spectrum, with the values of subjectively determined first just noticeable difference (JND) points.
DOI: 10.6084/m9.figshare.11323304.v1
title: Input data for: Global vulnerability of marine mammals to global warming.

description: The data set encompass the taxonomic, functional and phylogenetic data used in the study published in scientific report: Global vulnerability of marine mammals to global warming.<br><br>Phylogenetic tree data comes from Fritz et al 2009. The presence absence matrix was computed based on IUCN data. For more details on the traits data please see Albouy et al (2017).<br> Fritz, S. A., Bininda-Emonds, O. R. P. & Purvis, A. Geographical variation in predictors of mammalian extinction risk: big is bad, but only in the tropics. <i>Ecol. Lett.</i> <b>12</b>, 538–549 (2009). <br> Albouy, C., Delattre, V. L., Mérigot, B., Meynard, C. N. & Leprieur, F. Multifaceted biodiversity hotspots of marine mammals for conservation priorities. <i>Divers. Distrib.</i> <b>23</b>, 615–626 (2017).
DOI: 10.6084/m9.figshare.26089338.v1
title: HiGTS_2019s4

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2019s4 contains the data from October 1, 2019 to December 31, 2019.
DOI: 10.1594/pangaea.933229
title: Authigenic carbonate X-ray diffraction (NGHP-01 Site 16)
DOI: 10.1594/pangaea.933262
title: Estimates of titanomagnetite loss and pyrite sulfur precipitation (NGHP-01 Sites 10 and 16)
DOI: 10.17632/fzvmjgtdp4
title: Development and implementation of a UAV multisensor platform based on edge computing

description: Designs of 3D pieces used in the implementation and development in the project entitled: "Development and implementation of a UAV multisensor platform based on edge computing"

Abstract:
In this research, we propose the design, implementation and development of an UAV multi-sensor platform based on Edge Computing, from now on also called (UAV MS - EC platform), which uses parallel computing for a real time modular software and hardware architecture to use in applications such as, environmental monitoring, search, rescue, reconnaissance and surveillance operations, for which there is currently a large number of lightweight sensors that have been introduced in the market in the last few years, in this context, energy consumption become a important metric in the development of UAV MS-EC platforms for data collection. 
 
Therefore, it is necessary to perform an energy consumption analysis that combines different sensing modalities to provide a time/efficiency consumption model, would present an efficient energy management of a UAV MS-EC platform, for multipurpose applications that target low energy consumption for multiple operating modes, which implemented a sensor modules called as follow Geospatial Intelligence (GEOINT) module, Signals Intelligence (SIGINT) module, Measurement and Signature Intelligence (MASINT) module, and Navigation module, governed by one Edge Computing Embedded System (EC-ES) for data collection, which can be interchangeable according to the battery lifetime requirements.
DOI: 10.6084/m9.figshare.23390036.v1
title: Declining tree growth resilience mediates subsequent forest mortality in the US Mountain West

description: Data used for analyses in Cabon et <em>al</em>., Declining tree growth resilience mediates subsequent forest mortality in the US Mountain West, <strong>2023</strong>, Global Change Biology. We provide the raw and detrended ring width (RW and RWI columns of the rw.csv file) data as well as associated forest inventory metadata for each site, including tree level biometrics, forest structure and basal area mortality (metadata.csv). Plots and trees can be linked to the US Forest Inventory and Analysis public database. Climate data can be retrieved from gridded climate product based on fuzzed coordinates. Please find variable definitions in the file Definitions.xlsx.
DOI: 10.17632/x2pbw86sfc
title: Hf6Ta2O17 structures (DFT)

description: CIF files of the relaxed structures obtained from DFT. PBE was used with GPAW code
DOI: 10.6084/m9.figshare.22100714.v1
title: Supplementary Material for: SILIBININ, AN HSP90 INHIBITOR, ON HUMAN ACTH-SECRETING ADENOMAS

description: Introduction. The glucocorticoid receptor is pivotal to control corticotrophin (ACTH) secretion and its function is closely linked to the heat shock protein 90 (HSP90) chaperone complex. Impaired sensitivity to glucocorticoid feedback is a hallmark of human corticotroph adenomas, i.e., Cushing’s disease, a disorder with few medical treatment options. Silibinin, a HSP90 inhibitor, has been studied in tumoral corticotroph cells and its use proposed in Cushing’s disease. Aim of the present study was to further investigate the effect of silibinin on human corticotroph adenomas in vitro. Methods. Seven human ACTH-secreting pituitary adenomas were established in culture and treated with 10 – 50 µM silibinin with/without dexamethasone for up to 72 hours. ACTH medium levels were measured and POMC and glucocorticoid receptor, i.e., NR3C1, gene expression assessed. Results. Silibinin reduced spontaneous ACTH secretion and restored sensitivity to steroid negative feedback to a different extent in individual adenomas. POMC expression was decreased both in control and dexamethasone-treated wells in specimens sensitive to silibinin. Interestingly, silibinin reduced constitutive NR3C1 expression and reversed the dexamethasone-induced inhibition. Conclusions. Our findings indicate that silibinin can inhibit ACTH synthesis and secretion in individual human corticotroph adenomas and directly affects NR3C1 gene expression. These results reveal promising effects of this HSP90 inhibitor on human corticotroph adenomas and support an innovative target treatment for patients with Cushing’s disease.
DOI: 10.6084/m9.figshare.4762480.v1
title: AFM no noise

description: AFM no noise
DOI: 10.6084/m9.figshare.5241520.v1
title: Erratum: Do High Levels of n-3 Polyunsaturated Fatty Acids in Cell Membranes Increase the Risk of Postoperative Atrial Fibrillation?

description: <b><i>Objectives:</i></b> Postoperative atrial fibrillation (POAF) has been associated with an inflammatory response to the surgical procedure. n-3 long-chain polyunsaturated fatty acids (LC-PUFA) have been proposed for the prevention of POAF. We investigated the relationship between the plasma concentration of inflammatory mediators, levels of n-3 LC-PUFA in red blood cell (RBC) membrane lipids, and the risk of POAF after coronary artery bypass grafting (CABG). <b><i>Methods:</i></b> A total of 125 patients who underwent CABG were studied. Inflammatory mediators in plasma and the content of eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) in RBC membranes were assessed. <b><i>Results:</i></b> Sixty-two patients (49.6%) developed POAF. The POAF group had higher RBC levels of total n-3 LC-PUFA and DHA than did patients remaining in sinus rhythm (p &lt; 0.05). Of the inflammatory mediators, only postoperative interleukin-6 levels differed, being higher in the POAF group (p &lt; 0.05). Inflammatory mediators were not independent predictors of POAF by multivariable logistic regression analysis. Higher levels of DHA and total n-3 LC-PUFA in RBC membranes, measured immediately prior to CABG and on postoperative day 3, were linearly associated with an increased risk of POAF (p &lt; 0.05). <b><i>Conclusions:</i></b> Our findings suggest that inflammatory mediators are not associated with the occurrence of POAF. Interestingly, high n-3 LC-PUFA levels in RBC membranes appear to increase the risk of POAF.
DOI: 10.1594/pangaea.817197
title: (Table I) Soil density and concentration of 10Beryllium and 26Aluminium in samples from three glacial deposits in the McMurdo Dry Valleys
DOI: 10.17632/hb8czx2jxn
title: Micronucleus and Abnormality Nuclear in Birds of Seasonally Dry Tropical Forests

description: We are interested in understanding how the degradation of the dry forest in the Tumbesian region is related to an increase in genotoxic damage in birds. Our research hypothesis posited that the degradation of the dry forest would be associated with a higher frequency of micronuclei and nuclear abnormalities in the birds inhabiting these areas.

To test our hypothesis, we conducted safe captures of birds in three different types of forests: natural forests, semi-natural forests, and shrub-dominated forests in the Tumbesian region. We collected blood samples from the captured birds and conducted tests for micronuclei and nuclear abnormalities in the laboratory. These genotoxic markers are sensitive indicators of DNA damage and provide information about the genetic health of the birds. This dataset is the basis of our findings.
DOI: 10.6084/m9.figshare.19582060.v2
title: Wind and wave datasets in the western Atlantic Ocean

description: This dataset includes wind and wave datasets. The wind data comes from the ERA5 reanalysis wind dataset of the Europe Center for Medium-Term Weather Forecast (ECMWF; https://cds.climate.copernicus.eu/cdsapp#!/dataset/reanalysis-era5-single-levels?tab=form). The time range of wind data is from January 4, 2017 to December 31, 2017. After bilinear interpolation, the spatial resolution of wind data is increased from 0.25°×0.25° to 0.05°×0.05°. The wave dataset is a significant wave height dataset simulated by the SWAN model with wind data as input. The time range and resolution of the wave dataset are consistent with the processed wind dataset. The dataset includes two folders, one is data1, the other is data2. The target sea area of data1 is 32.75°N75.95°W-30.80°N74.00°W, which contains the wind files of U and V component matrices (data_u10.csv, data_v10.csv) and the file of significant wave height matrices (data_swh.csv). Their spatial resolution is 0.05°×0.05°. The target sea area of data2 is 33.75°N76.95°W−29.80°N73.00°W, which contains the wind files of U and V component matrices (data_u10.csv, data_v10.csv) and the files of significant wave height matrices (data_swh_41x41.csv, data_swh_81x81.csv). The spatial resolutions of data_u10.csv, data_v10.csv, and data_swh_81x81.csv are all 0.05° × 0.05°. The spatial resolution of data_swh_41x41.csv is 0.1°×0.1°.
DOI: 10.6084/m9.figshare.25321282.v1
title: Michigan Municipal Climate Action Plans

description: In the US, local governments are increasingly crucial in driving climate action. This study in Michigan, drawing from Tang et al. (2010) and Baker et al. (2012), assesses nine local climate action plans. It introduces a comprehensive framework, integrating climate resilience and environmental justice (EJ). Despite recognizing global climate concerns, results show that plans lack localized analyses and actions, hampering planning due to insufficient data, minimal coordination, limited funds, and finite policy options. Key aspects like equitable resource distribution, environmental burdens, and community engagement are often overlooked. Without addressing these, local governments lack the tools to effectively implement just and climate-oriented policies.This dataset presents the qualitative coding results which accompany this paper. It lists outcome criteria for each municipality, scored against overall progress and plan quality categories.
DOI: 10.6084/m9.figshare.8137715.v3
title: input_data.zip

description: Input data for the reconstructions and required datasets and code to generate the figures in the paper.<br>Proxy data used for the reconstructions:<br> proxy_ama_2.0.0_PAGES-crit-regional+FDR.txt: PAGES2k v2.0.0 proxy records, R-FDR screened subset (See PAGES2k Consortium, 2017, Scientific Data, doi: 10.1038/sdata.2017.88). Data are tab separated, the first column is the "paleoData_TSid" to identify each record in the metadata file. First row is year CE.<br> metadata_2.0.0_PAGES-crit-regional+FDR.txt: According metadatam tab separated. Contains a selection of PAGES2k v.2.0.0 database fields in each row: dataSetName, geo_latitude, geo_longitude, archiveType, resMed (Median resolution in years), paleoData_TSid (the column header in the data files).<br> proxy_ama_2.0.0_HR-0.67_infilled_DINEOF_1850-2000_PAGES-crit-regional+FDR.txt: high-resolution (annual and higher) and infilled (calibration period) subset of the proxy data used for the PCR and CPS methods (210 records), see Methods section.<br> <br> Instrumental target:<br> had4_krig_ama_v2_0_0.txt: April to March aggregated target used for the reconstructions. Space separated, no column headers. Newest updated data available at: http://www-users.york.ac.uk/~kdc3/papers/coverage2013/had4_krig_v2_0_0.txt<br> <br> Climate model data used for Figs. 2-4:<br> Models_fullforced_Past1000_GMST_AprMAr.RData: R Workspace containing the model data as time series over the April-March seasonal window, to be consistent with the reconstructions. colnames(models.ama.fullforced) identifies the name of each simulation. Details see Methods section.<br> Models_ctrl_GMST_AprMar.RData: Model control runs. Same format as model data described above.<br> <br> Forcing data:<br> forcing2.csv: Global mean forcing datasets, semicolon separated. Columns: Year CE, CO2, Volcanic, Solar<br> README_forcing.md: Further information about the forcing datasets (sources etc).<br> <br> Further results used to generate the Figures:<br> ebm_results_volc_vs_all_forcing300.RData: Results from the Energy Balance Model for Fig. 4a<br> DandA_CESM_ens_30-200.RData: Results from the D&A analysis for Fig. 3<br> recons.ARnoise.RData: Noise-proxy reconstructions for Figure 4b<br><br> Figs_gmst.R: R script to generate the Figures<br> R-functions_gmst.R Functions required to run Figs_gmst.R<br><br>
DOI: 10.6084/m9.figshare.1302029.v4234
title: UNH RM2 tow tank experiment: Raw data

description: This fileset contains the raw data from the UNH RM2 tow tank experiment. See link below for processing code, which will download this data as needed.
DOI: 10.6084/m9.figshare.24056649.v1
title: CM2SFCA_data

description: The dataset contains the urban park and 200m*200m population data in the central part of Wuhan, China.
DOI: 10.6084/m9.figshare.7059365.v4
title: Mobile genetic elements on the ST22 strain HO 5096 0412

description: This file contains the genomic coordinates of mobile genetic elements on the clonal complex 22 Staphylococcus aureus reference genome (Genbank accession number HE681097).<br>
DOI: 10.1594/pangaea.129316
title: Total organic carbon from CTD cast KIWI-8/4-13
DOI: 10.17632/2nb9pnht9v
title: Questionnaire for Digital Orientation, Digital Capability, Digital Innovation and Business Sustainability

description: This questionnaire contains items for measuring digital orientation, digital capability, digital innovation and small business sustainability. The questionnaire was adapted from several previous research to suit small business in the Indonesian context. The questionnaire items have been assessed to meet validity and reliability requirement.
DOI: 10.17632/5cs64gdfwp
title: Community Acquired Pneumonia

description: This data set is from two public (one each secondary and tertiary) and two private (one secondary and one tertiary) health care facilities at Delhi, Kolkata, Pune and Chennai. All patients aged ≥60 years admitted in medicine, pulmonary and geriatric wards of the selected facilities between 4th December 2018 to 20th March 2020 were screened using an operational definition modified from 2009 update of British Thoracic Society (BTS) guidelines , described as new onset cough within last 10 days along with at least one lower respiratory tract symptom (dyspnea, chest pain), and at least one systemic feature (sweating, fevers, shivers, aches and pains and/or temperature of 38° C or more) and tachypnea with a respiratory rate&gt; 20/min or a physician diagnosed pneumonia. Patients who had been hospitalized for &gt; 48 hours in the hospital or any other facility for the same episode of illness were not enrolled to exclude possible nosocomial illnesses. 
At the time of enrollment, trained project nurses collected data about age, sex, influenza vaccination in past one year, history of current smoking and use of alcohol and pre-existing chronic morbidity by interviewing participants. Details of clinical assessment, diagnostic tests results of hemogram, blood urea, blood glucose, X-ray and use of medications were gathered by reviewing medical records using a standard data collection tool on open data kit (ODK) modules on handheld tablets. The enrolled participants' nasal and oropharyngeal specimens were collected within 48 hours of admission using the standard protocol. These combined swabs were placed immediately into viral transport media (VTM) on ice or ice pack, triple-sealed for transportation. All the specimens were transported to the respective virology laboratory of the institute on the same day. Viral RNA was extracted using the QiAmp Viral RNA kit (Qiagen, Germany) as per the manufacturer’s protocols. We used U.S. Centers for Disease Control and Prevention (CDC) approved one-step Real Time-PCR protocol and primers and probes for influenza and RSV virus to detect the influenza (A and B) and RSV virus. All samples were also tested for human metapneumovirus (hMPV), parainfluenza viruses (PIV), rhinoviruses and adenoviruses using a multiplex kit developed by National institute of Virology .The study team visited the hospitals every alternate day to enroll new patients and evaluate the existing ones till discharge. Any change in status of the patient or admission to the ICU was noted. After discharge, participants were followed up telephonically on day 7 and day 30 from the date of discharge to collect data on their outcome status. During telephonic follow-up, if a participant could not be contacted on first attempt, two more attempts were made to contact within next 7 days, before categorizing a participant as lost to follow-up. The outcomes were categorized as alive and at home, alive and readmitted, dead, or lost to follow-up.
DOI: 10.17632/7dgcd8krhr
title: Base de datos bibliográfica de documentos en Scopus "social sciences" con el término "care poli*" en países europeos y latinoamericanos.

description: Esta base de datos forma parte del artículo "El estado de la investigación sobre Políticas del cuidado en Europa e Iberoamérica: Análisis bibliométrico y temático" (en revisión)
DOI: 10.6084/m9.figshare.11663277.v1
title: Data of patients entering a rehabilitation program

description: This is a data set made up of anagraphical, social and clinical records related to patient entered a rehabilitation program. Each record has further associated a performance measurement – called Barthel Index (BI) - which is widely recognized as a metric for assessing the Activities Daily Living (ADL) level.<br>The following files are made available:<br>- Dataset.csv: Raw dataset<br>- Cleaned_ Dataset.csv: dataset after preprocessing- Orthopedic.csv: dataset which refers only to orthopedic patients- Neurologial.csv: dataset with only neurological patients- Encoding Features.xlsx: tables to assign each code ICD9-CM to the corresponding clinical category<br>For more information about the data, please have a look at the scientific paper (More information in the following days)