cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10546444
title: Automatic Collation for Diversifying Corpora (ACDC) Data

description: ACDC Project, Data:

One of OpenITI’s major deliverables in our most recent round of work is the Automatic Collation for Diversifying Corpora (ACDC) project and ensuing tool, which we are now making available for wider use and experimentation: the relevant code and instructions for installation and use are available on Github, and additional data and documentation will be forthcoming. ACDC is one component in our multi-pronged strategy to significantly boost handwritten text recognition for Arabic script as manifest within the manuscript tradition, a tradition of text production that dates from around the time of the Qur’an’s codification all the way down to the present (in some parts of the Islamicate world manuscript production for various purposes remains very much alive!).

For more information about the project, please use the following links:





Automatic Collation for Diversify Corpora (ACDC) Tutorial: a video introduction and tutorial to the project and the ensuing tool, which explains the logic of the project and gives a detailed walk-through of use


Automatic Collation for Diversifying Corpora: Commonly Copied Texts as Distant Supervision for Handwritten Text Recognition



Introducing the ACDC Project, Part I: Training Data Production and the Diversity of the Islamicate Manuscript Tradition
DOI: 10.5281/zenodo.10546445
title: Automatic Collation for Diversifying Corpora (ACDC) Data

description: ACDC Project, Data:

One of OpenITI’s major deliverables in our most recent round of work is the Automatic Collation for Diversifying Corpora (ACDC) project and ensuing tool, which we are now making available for wider use and experimentation: the relevant code and instructions for installation and use are available on Github, and additional data and documentation will be forthcoming. ACDC is one component in our multi-pronged strategy to significantly boost handwritten text recognition for Arabic script as manifest within the manuscript tradition, a tradition of text production that dates from around the time of the Qur’an’s codification all the way down to the present (in some parts of the Islamicate world manuscript production for various purposes remains very much alive!).

For more information about the project, please use the following links:





Automatic Collation for Diversify Corpora (ACDC) Tutorial: a video introduction and tutorial to the project and the ensuing tool, which explains the logic of the project and gives a detailed walk-through of use


Automatic Collation for Diversifying Corpora: Commonly Copied Texts as Distant Supervision for Handwritten Text Recognition



Introducing the ACDC Project, Part I: Training Data Production and the Diversity of the Islamicate Manuscript Tradition
DOI: 10.5281/zenodo.6522117
title: Registros biológicos de plantas potencialmente nutricias de abejas nativas mexicanas identificadas a partir de observaciones de Naturalista (actualización 2022/09)

description: Biological records of potentially nutrient plants of mexican wild bees identified from Naturalista (Mexican iNaturalist Node) observations. This is an interinstitutional effort for taxonomic curation and mobilization of plant observations that appear in photos of bees compiled by the project “Xicotli Data: Native Bees and their flowers” (https://www.naturalista.mx/projects/xicotli-data-abejas-mexicanas-y-sus-flores). It seeks to maximize the use of the available observations in Naturalista. Thus, it is expected to contribute to the documentation of the native plant-bee interactions. This resource has two datasets:



	
Full iNaturalist API response from worked XicotliData project data, not research level records
	
A DwC extract from the same iNaturalist data.



All the records were examined by our team of bee especialists and plant taxonomist experts.


This dataset has been generated within the framework of the project “Integration of biodiversity data of wild bee-plant interactions in Mexico” (https://www.gbif.org/es/project/BID-CA2020-021-NAC/integration-of-biodiversity-data-of-wild-bee-plant-interactions-in-mexico).
DOI: 10.5281/zenodo.6522118
title: Registros biológicos de plantas potencialmente nutricias de abejas nativas mexicanas identificadas a partir de observaciones de Naturalista

description: Biological records of potentially nutrient plants of mexican wild bees identified from Naturalista (Mexican iNaturalist Node) observations. This is an interinstitutional effort for taxonomic curation and mobilization of plant observations that appear in photos of bees compiled by the project “Xicotli Data: Native Bees and their flowers” (https://www.naturalista.mx/projects/xicotli-data-abejas-mexicanas-y-sus-flores). It seeks to maximize the use of the available observations in Naturalista. Thus, it is expected to contribute to the documentation of the native plant-bee interactions. This resource has two datasets: Full iNaturalist API response from worked XicotliData project data, not research level records A DwC extract from the same iNaturalist data. All the records were examined by our team of bee especialists and plant taxonomist experts. This dataset has been generated within the framework of the project “Integration of biodiversity data of wild bee-plant interactions in Mexico” (https://www.gbif.org/es/project/BID-CA2020-021-NAC/integration-of-biodiversity-data-of-wild-bee-plant-interactions-in-mexico).
DOI: 10.5281/zenodo.7261816
title: Registros biológicos de plantas potencialmente nutricias de abejas nativas mexicanas identificadas a partir de observaciones de Naturalista (actualización 2022/09)

description: Biological records of potentially nutrient plants of mexican wild bees identified from Naturalista (Mexican iNaturalist Node) observations. This is an interinstitutional effort for taxonomic curation and mobilization of plant observations that appear in photos of bees compiled by the project “Xicotli Data: Native Bees and their flowers” (https://www.naturalista.mx/projects/xicotli-data-abejas-mexicanas-y-sus-flores). It seeks to maximize the use of the available observations in Naturalista. Thus, it is expected to contribute to the documentation of the native plant-bee interactions. This resource has two datasets: Full iNaturalist API response from worked XicotliData project data, not research level records A DwC extract from the same iNaturalist data. All the records were examined by our team of bee especialists and plant taxonomist experts. This dataset has been generated within the framework of the project “Integration of biodiversity data of wild bee-plant interactions in Mexico” (https://www.gbif.org/es/project/BID-CA2020-021-NAC/integration-of-biodiversity-data-of-wild-bee-plant-interactions-in-mexico).
DOI: 10.5281/zenodo.7892227
title: Registros biológicos de plantas potencialmente nutricias de abejas nativas mexicanas identificadas a partir de observaciones de Naturalista (actualización 2022/09)

description: Biological records of potentially nutrient plants of mexican wild bees identified from Naturalista (Mexican iNaturalist Node) observations. This is an interinstitutional effort for taxonomic curation and mobilization of plant observations that appear in photos of bees compiled by the project “Xicotli Data: Native Bees and their flowers” (https://www.naturalista.mx/projects/xicotli-data-abejas-mexicanas-y-sus-flores). It seeks to maximize the use of the available observations in Naturalista. Thus, it is expected to contribute to the documentation of the native plant-bee interactions. This resource has two datasets:



	
Full iNaturalist API response from worked XicotliData project data, not research level records
	
A DwC extract from the same iNaturalist data.



All the records were examined by our team of bee especialists and plant taxonomist experts.


This dataset has been generated within the framework of the project “Integration of biodiversity data of wild bee-plant interactions in Mexico” (https://www.gbif.org/es/project/BID-CA2020-021-NAC/integration-of-biodiversity-data-of-wild-bee-plant-interactions-in-mexico).
DOI: 10.5281/zenodo.10553343
title: Aplicaciones y Efectividad de Técnicas de Inteligencia Artificial y Aprendizaje Automático en la Fisioterapia: Una Revisión Sistemática de la Literatura
title: Applications and Effectiveness of Artificial Intelligence and Machine Learning Techniques in Physiotherapy: A Systematic Literature Review

description: Conjunto de datos en excel correspondiente a la revisión sistemática (SLR) del estudio, tiene como propósito analizar exhaustivamente la literatura científica de los últimos 5 años para identificar los avances y enfoques tecnológicos en tendencia en los campos de la IA y la fisioterapia, recopilando información valiosa para especialistas.

Esta información se organizó en una matriz que incluye: título del artículo, país de origen, población estudiada, intervención, comparación, así como las respuestas a cada pregunta de investigación, categorizadas según las técnicas de inteligencia artificial aplicadas (RQ1), los estadísticos reportados, las enfermedades o afecciones tratadas (RQ2), el propósito de la aplicación de la técnica (RQ3), los resultados observados en los pacientes (RQ4) y, finalmente, los beneficios directos para la fisioterapia (RQ5) que representan las variables del presente estudio.
DOI: 10.5281/zenodo.10553344
title: Aplicaciones y Efectividad de Técnicas de Inteligencia Artificial y Aprendizaje Automático en la Fisioterapia: Una Revisión Sistemática de la Literatura
title: Applications and Effectiveness of Artificial Intelligence and Machine Learning Techniques in Physiotherapy: A Systematic Literature Review

description: Conjunto de datos en excel correspondiente a la revisión sistemática (SLR) del estudio, tiene como propósito analizar exhaustivamente la literatura científica de los últimos 5 años para identificar los avances y enfoques tecnológicos en tendencia en los campos de la IA y la fisioterapia, recopilando información valiosa para especialistas.

Esta información se organizó en una matriz que incluye: título del artículo, país de origen, población estudiada, intervención, comparación, así como las respuestas a cada pregunta de investigación, categorizadas según las técnicas de inteligencia artificial aplicadas (RQ1), los estadísticos reportados, las enfermedades o afecciones tratadas (RQ2), el propósito de la aplicación de la técnica (RQ3), los resultados observados en los pacientes (RQ4) y, finalmente, los beneficios directos para la fisioterapia (RQ5) que representan las variables del presente estudio.
DOI: 10.5281/zenodo.10460685
title: Replication Package for "Data-Driven Evidence-Based Syntactic Sugar Design"

description: Replication Package supplementing the submission of "Data-Driven Evidence-Based Syntactic Sugar Design"
DOI: 10.5281/zenodo.10557087
title: Replication Package for "Data-Driven Evidence-Based Syntactic Sugar Design"

description: Replication Package supplementing the submission of "Data-Driven Evidence-Based Syntactic Sugar Design"
DOI: 10.5281/zenodo.10557102
title: Replication Package for "Data-Driven Evidence-Based Syntactic Sugar Design"

description: Replication Package supplementing the submission of "Data-Driven Evidence-Based Syntactic Sugar Design"
DOI: 10.5281/zenodo.8197684
title: Replication Package for "Data-Driven Evidence-Based Syntactic Sugar Design"

description: Replication Package supplementing the submission of "Data-Driven Evidence-Based Syntactic Sugar Design"
DOI: 10.5281/zenodo.8197685
title: Replication Package for "Data-Driven Evidence-Based Syntactic Sugar Design"

description: Replication Package supplementing the submission of "Data-Driven Evidence-Based Syntactic Sugar Design"
DOI: 10.6084/m9.figshare.25048214
title: Main Old Age Allowance

description: The units of analysis of this study are 9,614 households of which the oldest member is aged more than 62 years taken from the Household Income and Expenditure Survey (HIES) 2016–2017, a national survey conducted at five-year intervals in Bangladesh (Bangladesh Bureau of Statistics, 2017).
DOI: 10.6084/m9.figshare.25048214.v1
title: Main Old Age Allowance

description: The units of analysis of this study are 9,614 households of which the oldest member is aged more than 62 years taken from the Household Income and Expenditure Survey (HIES) 2016–2017, a national survey conducted at five-year intervals in Bangladesh (Bangladesh Bureau of Statistics, 2017).
DOI: 10.6084/m9.figshare.24717679.v1
title: Gas in external fields: the weird case of the logarithmic trap

description: The effects of an attractive logarithmic potential u(r)=u0ln⁡(r/r0) (u0&gt;0 being the trap strength and r0 an arbitrary length scale) on a gas of <i>N</i> non interacting particles (Bosons or Fermions), in a box of volume VD, are studied in <i>D</i> = 2, 3 dimensions. The unconventional behaviour of the gas challenges the current notions of thermodynamic limit and size independence. When VD and <i>N</i> diverge, with finite density N/VD&lt;∞ and finite u0, the gas collapses in the ground state, independently from the bosonic/fermionic nature of the particles, at <i>any</i> temperature. If, instead, N/VD→0, there exists a critical temperature Tc, such that the gas remains in the ground state at any T&lt;Tc, and ‘evaporates’ above, in a non-equilibrium state of borderless diffusion. For the gas to exhibit a conventional Bose–Einstein condensation (BEC) or a finite Fermi level, the strength u0 must vanish with VD→∞, according to a complicated exponential relationship, as a consequence of the exponentially increasing density of states, specific of the logarithmic trap.
DOI: 10.6084/m9.figshare.24808014
title: Influence of pre-existing configurations of dislocations on the initial pop-in load during nanoindentation in a CrCoNi medium-entropy alloy

description: The origin and mechanisms responsible for incipient plasticity in metals are still poorly understood. Moreover, the reasons for the recently reported large scattering of the initial pop-in load remain unclear. Hence, this study addresses these issues through a combination of nanoindentation tests and electron channelling contrast imaging characterisation considering a CrCoNi medium-entropy alloy. Experimental findings were also supported by elastic calculations that consider both the indentation and dislocation stress fields. A wide scatter in the maximum shear stress underneath the indenter, as expected, was observed for the analysis based on dislocation density. As a consequence, the spatial arrangement of dislocations within the indented region or local dislocation configuration is introduced as a new parameter to overcome overly simple analysis based on the dislocation density. The maximum shear stress underneath the indenter increased from 6 GPa for dislocation closer to the indentation axis to 11 GPa at 600 nm for dislocation far away from it. Additionally, elastic calculations revealed that the response to the incoming nanoindenter was different for dislocations with different configurations. Thus, the complex interactions of stress fields due to configurations of dislocations and indentation account for the large scatter of the maximum shear stress beneath the indenter.
DOI: 10.6084/m9.figshare.24808014.v1
title: Influence of pre-existing configurations of dislocations on the initial pop-in load during nanoindentation in a CrCoNi medium-entropy alloy

description: The origin and mechanisms responsible for incipient plasticity in metals are still poorly understood. Moreover, the reasons for the recently reported large scattering of the initial pop-in load remain unclear. Hence, this study addresses these issues through a combination of nanoindentation tests and electron channelling contrast imaging characterisation considering a CrCoNi medium-entropy alloy. Experimental findings were also supported by elastic calculations that consider both the indentation and dislocation stress fields. A wide scatter in the maximum shear stress underneath the indenter, as expected, was observed for the analysis based on dislocation density. As a consequence, the spatial arrangement of dislocations within the indented region or local dislocation configuration is introduced as a new parameter to overcome overly simple analysis based on the dislocation density. The maximum shear stress underneath the indenter increased from 6 GPa for dislocation closer to the indentation axis to 11 GPa at 600 nm for dislocation far away from it. Additionally, elastic calculations revealed that the response to the incoming nanoindenter was different for dislocations with different configurations. Thus, the complex interactions of stress fields due to configurations of dislocations and indentation account for the large scatter of the maximum shear stress beneath the indenter.
DOI: 10.6084/m9.figshare.24717679
title: Gas in external fields: the weird case of the logarithmic trap

description: The effects of an attractive logarithmic potential u(r)=u0ln⁡(r/r0) (u0&gt;0 being the trap strength and r0 an arbitrary length scale) on a gas of <i>N</i> non interacting particles (Bosons or Fermions), in a box of volume VD, are studied in <i>D</i> = 2, 3 dimensions. The unconventional behaviour of the gas challenges the current notions of thermodynamic limit and size independence. When VD and <i>N</i> diverge, with finite density N/VD&lt;∞ and finite u0, the gas collapses in the ground state, independently from the bosonic/fermionic nature of the particles, at <i>any</i> temperature. If, instead, N/VD→0, there exists a critical temperature Tc, such that the gas remains in the ground state at any T&lt;Tc, and ‘evaporates’ above, in a non-equilibrium state of borderless diffusion. For the gas to exhibit a conventional Bose–Einstein condensation (BEC) or a finite Fermi level, the strength u0 must vanish with VD→∞, according to a complicated exponential relationship, as a consequence of the exponentially increasing density of states, specific of the logarithmic trap.
DOI: 10.6084/m9.figshare.24465347
title: Optineurin in patients with Amyotrophic Lateral Sclerosis associated to atypical Parkinsonism in Tunisian population

description: Amyotrophic Lateral Sclerosis (ALS) is a heterogeneous disorder and the phenotypic variability goes far beyond the used clinical stratification parameter. Evidence has emerged that ALS may coexist with distinct neurodegenerative diseases in single cases. We aim to study the clinical features of two familial cases of ALS carriers of two distinct variants harbored in the Optineurin (<i>OPTN</i>) gene. We included definite familial ALS followed up in the Department of Neurology of Razi University Hospital, Tunisia, and selected according to Byrne criteria. Preliminary screening for the four main ALS genes (<i>SOD1</i>, <i>C9ORF72</i>, <i>TARDBP</i>, <i>FUS</i>) was conducted. Given the negative results, we proceeded to NGS target-re-sequencing with a custom panel including genes associated with ALS-FTD, Alzheimer’s, and Parkinson’s diseases. Both families are carriers of two different <i>OPTN</i> variants and they present very different ALS clinical features. The first family comprises two siblings diagnosed with ALS and Corticobasal syndrome (ALS-CBS) at an early age of onset and carriers of <i>OPTN</i> p.E135X in the homozygous state. The proband for the second family was diagnosed with ALS at an early age of onset presenting as progressive muscular atrophy with rapid progression. Genetic analysis revealed the presence of the homozygous variant p.R520H. Our findings highlight the peculiarity of genetic Tunisian drift. Indeed, genes with a recessive mode of inheritance may explain part of ALS diversity in clinical features. Therefore, the screening of the <i>OPTN</i> gene is highly recommended among inbreeding populations such as the Tunisian one.
DOI: 10.6084/m9.figshare.24465347.v1
title: Optineurin in patients with Amyotrophic Lateral Sclerosis associated to atypical Parkinsonism in Tunisian population

description: Amyotrophic Lateral Sclerosis (ALS) is a heterogeneous disorder and the phenotypic variability goes far beyond the used clinical stratification parameter. Evidence has emerged that ALS may coexist with distinct neurodegenerative diseases in single cases. We aim to study the clinical features of two familial cases of ALS carriers of two distinct variants harbored in the Optineurin (<i>OPTN</i>) gene. We included definite familial ALS followed up in the Department of Neurology of Razi University Hospital, Tunisia, and selected according to Byrne criteria. Preliminary screening for the four main ALS genes (<i>SOD1</i>, <i>C9ORF72</i>, <i>TARDBP</i>, <i>FUS</i>) was conducted. Given the negative results, we proceeded to NGS target-re-sequencing with a custom panel including genes associated with ALS-FTD, Alzheimer’s, and Parkinson’s diseases. Both families are carriers of two different <i>OPTN</i> variants and they present very different ALS clinical features. The first family comprises two siblings diagnosed with ALS and Corticobasal syndrome (ALS-CBS) at an early age of onset and carriers of <i>OPTN</i> p.E135X in the homozygous state. The proband for the second family was diagnosed with ALS at an early age of onset presenting as progressive muscular atrophy with rapid progression. Genetic analysis revealed the presence of the homozygous variant p.R520H. Our findings highlight the peculiarity of genetic Tunisian drift. Indeed, genes with a recessive mode of inheritance may explain part of ALS diversity in clinical features. Therefore, the screening of the <i>OPTN</i> gene is highly recommended among inbreeding populations such as the Tunisian one.
DOI: 10.6084/m9.figshare.24228852
title: Integrated analysis of transcriptomic and proteomic alterations in mouse models of ALS/FTD identify early metabolic adaptions with similarities to mitochondrial dysfunction disorders

description: Sporadic and familial amyotrophic lateral sclerosis (ALS) is a fatal progressive neurodegenerative disease that results in loss of motor neurons and, in some patients, associates with frontotemporal dementia (FTD). Apart from the accumulation of proteinaceous deposits, emerging literature indicates that aberrant mitochondrial bioenergetics may contribute to the onset and progression of ALS/FTD. Here we sought to investigate the pathophysiological signatures of mitochondrial dysfunction associated with ALS/FTD. By means of label-free mass spectrometry (MS) and mRNA sequencing (mRNA-seq), we report pre-symptomatic changes in the cortices of TDP-43 and FUS mutant mouse models. Using tissues from transgenic mouse models of mitochondrial diseases as a reference, we performed comparative analyses and extracted unique and common mitochondrial signatures that revealed neuroprotective compensatory mechanisms in response to early damage. In this regard, upregulation of both Acyl-CoA Synthetase Long-Chain Family Member 3 (ACSL3) and mitochondrial tyrosyl-tRNA synthetase 2 (YARS2) were the most representative change in pre-symptomatic ALS/FTD tissues, suggesting that fatty acid beta-oxidation and mitochondrial protein translation are mechanisms of adaptation in response to ALS/FTD pathology. Together, our unbiased integrative analyses unveil novel molecular components that may influence mitochondrial homeostasis in the earliest phase of ALS.