cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4225/03/59e44adad54dc
title: Kathy Maczkowiack: stories about the adoption experience in Australia

description: This story is part of the History of Adoption, a four year national research project funded by the Australian Research Council, 2009-2012. <br>Contributors: Monash University. Faculty of Arts. School of Philosophical, Historical and International Studies ; History of Adoption Project ; Quartly, Marian ; <br>Coverage: Metropolitan Australia, WA 1960s <br>Rights: Copyright 2010. Monash University. Faculty of Arts. History of Adoption Project
DOI: 10.4225/03/59e44aec424a2
title: Terry Priestley: stories about the adoption experience in Australia

description: This story is part of the History of Adoption, a four year national research project funded by the Australian Research Council, 2009-2012. <br>Contributors: Monash University. Faculty of Arts. School of Philosophical, Historical and International Studies ; History of Adoption Project ; Quartly, Marian ; <br>Coverage: Regional Australia 1980s <br>Rights: Copyright 2010. Monash University. Faculty of Arts. History of Adoption Project
DOI: 10.4225/03/59e44aea8e8ed
title: Judith Hendriksen: stories about the adoption experience in Australia

description: This story is part of the History of Adoption, a four year national research project funded by the Australian Research Council, 2009-2012. <br>Contributors: Monash University. Faculty of Arts. School of Philosophical, Historical and International Studies ; History of Adoption Project ; Quartly, Marian ; <br>Coverage: Regional Australia, WA 1970s <br>Rights: Copyright 2010. Monash University. Faculty of Arts. History of Adoption Project
DOI: 10.4225/03/59e44afcb2ef0
title: Margaret Ann Scott: stories about the adoption experience in Australia

description: This story is part of the History of Adoption, a four-year national research project funded by the Australian Research Council, 2009-2012. <br>Contributors: Monash University. Faculty of Arts. School of Philosophical, Historical and International Studies ; History of Adoption Project ; Quartly, Marian ; <br>Coverage: Regional Australia, VIC 1950s <br>Rights: Copyright 2010. Monash University. Faculty of Arts. History of Adoption Project
DOI: 10.4225/03/59e44aea80d5c
title: Clare Graydon: stories about the adoption experience in Australia

description: This story is part of the History of Adoption, a four year national research project funded by the Australian Research Council, 2009-2012. <br>Contributors: Monash University. Faculty of Arts. School of Philosophical, Historical and International Studies ; History of Adoption Project ; Quartly, Marian ; <br>Coverage: Regional Australia, NSW 1970s <br> Rights: Copyright 2010. Monash University. Faculty of Arts. History of Adoption Project
DOI: 10.4225/03/59e44aea85460
title: Liz Peter: stories about the adoption experience in Australia

description: This story is part of the History of Adoption, a four year national research project funded by the Australian Research Council, 2009-2012. <br>Contributors: Monash University. Faculty of Arts. School of Philosophical, Historical and International Studies ; History of Adoption Project ; Quartly, Marian ; <br>Coverage: SA 2000s <br>Rights: Copyright 2010. Monash University. Faculty of Arts. History of Adoption Project
DOI: 10.6084/m9.figshare.5497468
title: NIMG Special issue on brain parcellation and segmentation

description: A list of the papers published as part of the Neuroimage Special Issue on Brain Segmentation and Parcellation. <br>The file is in the tsv (tabular-separated values) format and includes for each paper the title, the name of the corresponding author, and the abstract. <br>There is also a notebook showing how to group the papers into categories. <br>The Dockerfile shows how to reproduce the environment to run the notebook in a docker container (includes a python data science stack, as well as worldcloud).
DOI: 10.6084/m9.figshare.5497528.v3
title: Summarized progress report (October 2017): Assessment of sanitation and water supply system based on longitudinal IFLS data

description: Kesehatan masyarakat belum banyak dihubungkan dengan properti fisik lingkungan. Penelitian ini bertujuan untuk mencari hubungan antara data kesehatan masyarakat dengan data fisik infrastruktur dan kualitas sumber air dari IFLS dan data kualitas air tanah sebagai salah satu sumber air terbesar yang digunakan oleh masyrakat Indonesia, khususnya Bandung.Kami mengambil data kualitas air di sebanyak 70 titik sumur warga dengan kedalaman bervariasi antara 6 hingga 20 m. Konsentrasi tujuh ion utama dianalisis dengan tambahan pengukuran temperatur, TDS, dan pH di lapangan menggunakan peralatan jinjing yang ringan. Khusus di kawasan bantaran Sungai Cikapundung, kami melakukan identifikasi kandungan bakteriologi, dalam hal ini bakteri E coli. Kemudian di beberapa lokasi, kami dibantu mahasiswa S1, juga melakukan pengukuran berulang (time series) sebanyak empat kali dalam sehari, untuk melihat fluktuasi parameter temperatur, TDS, dan pH pada air sungai.Hasilnya cukup menarik, saat data IFLS dan data penderita diare di Puskesmas, menunjukkan adanya korelasi positif antara kualitas infrastruktur sumber air dengan jumlah penderita diare. Hal ini didukung dengan peningkatan kandungan E coli di air S. CIkapundung sebesar hampir 2 kali lipat antara kawasan hulu dengan kawasan hilir. Kondisi ini berimbas kepada air tanah, karena pada daerah selatan (dari Viaduct ke Dayeuhkolot), air sungai meresap ke dalam akuifer. Dari sini, kami berpendapat bahwa akan terjadi interaksi yang sangat intensif antara air sumur warga di sekitar sungai (khususnya yang menggunakan pompa) dengan air sungai.Untuk meningkatkan kontribusi kepada ITB dan Kota Bandung pada umumnya, kami mengusulkan adanya portal data hidrologi yang dikelola bersama antara Pemkot Bandung dan ITB agar data didapatkan secara rutin dan dapat dianalisis kapanpun. Hal ini kami usulkan karena seringkali analisis tidak dapat dilakukan secara instan, karena perlu diawali dengan tahapan mencari data.Selain itu, riset ini juga menambah contoh riset terbuka kepada para dosen/peneliti dengan cara: membuat repositori data dan repositori riset yang terbuka (selain Simlitabmas yang masih tertutup), membuat artikel blog yang diperbarui mengikuti perkembangan riset, serta membudayakan konsep open access, yang mana seluruh luaran riset ini bebas untuk dibaca, digunakan/dianalisis ulang, dan dipadukan dengan hasil yang lain (<em>free to read, reuse, remix</em>), untuk berbagai keperluan pembaca.
DOI: 10.6084/m9.figshare.5497528.v2
title: Summarized progress report (October 2017): Assessment of sanitation and water supply system based on longitudinal IFLS data

description: Kesehatan masyarakat belum banyak dihubungkan dengan properti fisik lingkungan. Penelitian ini bertujuan untuk mencari hubungan antara data kesehatan masyarakat dengan data fisik infrastruktur dan kualitas sumber air dari IFLS dan data kualitas air tanah sebagai salah satu sumber air terbesar yang digunakan oleh masyrakat Indonesia, khususnya Bandung.Kami mengambil data kualitas air di sebanyak 70 titik sumur warga dengan kedalaman bervariasi antara 6 hingga 20 m. Konsentrasi tujuh ion utama dianalisis dengan tambahan pengukuran temperatur, TDS, dan pH di lapangan menggunakan peralatan jinjing yang ringan. Khusus di kawasan bantaran Sungai Cikapundung, kami melakukan identifikasi kandungan bakteriologi, dalam hal ini bakteri E coli. Kemudian di beberapa lokasi, kami dibantu mahasiswa S1, juga melakukan pengukuran berulang (time series) sebanyak empat kali dalam sehari, untuk melihat fluktuasi parameter temperatur, TDS, dan pH pada air sungai.Hasilnya cukup menarik, saat data IFLS dan data penderita diare di Puskesmas, menunjukkan adanya korelasi positif antara kualitas infrastruktur sumber air dengan jumlah penderita diare. Hal ini didukung dengan peningkatan kandungan E coli di air S. CIkapundung sebesar hampir 2 kali lipat antara kawasan hulu dengan kawasan hilir. Kondisi ini berimbas kepada air tanah, karena pada daerah selatan (dari Viaduct ke Dayeuhkolot), air sungai meresap ke dalam akuifer. Dari sini, kami berpendapat bahwa akan terjadi interaksi yang sangat intensif antara air sumur warga di sekitar sungai (khususnya yang menggunakan pompa) dengan air sungai.Untuk meningkatkan kontribusi kepada ITB dan Kota Bandung pada umumnya, kami mengusulkan adanya portal data hidrologi yang dikelola bersama antara Pemkot Bandung dan ITB agar data didapatkan secara rutin dan dapat dianalisis kapanpun. Hal ini kami usulkan karena seringkali analisis tidak dapat dilakukan secara instan, karena perlu diawali dengan tahapan mencari data.Selain itu, riset ini juga menambah contoh riset terbuka kepada para dosen/peneliti dengan cara: membuat repositori data dan repositori riset yang terbuka (selain Simlitabmas yang masih tertutup), membuat artikel blog yang diperbarui mengikuti perkembangan riset, serta membudayakan konsep open access, yang mana seluruh luaran riset ini bebas untuk dibaca, digunakan/dianalisis ulang, dan dipadukan dengan hasil yang lain (<em>free to read, reuse, remix</em>), untuk berbagai keperluan pembaca.
DOI: 10.6084/m9.figshare.5497468.v1
title: NIMG Special issue on brain parcellation and segmentation

description: A list of the papers published as part of the Neuroimage Special Issue on Brain Segmentation and Parcellation. <br>The file is in the tsv (tabular-separated values) format and includes for each paper the title, the name of the corresponding author, and the abstract.
DOI: 10.6084/m9.figshare.5497468.v2
title: NIMG Special issue on brain parcellation and segmentation

description: A list of the papers published as part of the Neuroimage Special Issue on Brain Segmentation and Parcellation. <br>The file is in the tsv (tabular-separated values) format and includes for each paper the title, the name of the corresponding author, and the abstract.
DOI: 10.6084/m9.figshare.5497468.v3
title: NIMG Special issue on brain parcellation and segmentation

description: A list of the papers published as part of the Neuroimage Special Issue on Brain Segmentation and Parcellation. <br>The file is in the tsv (tabular-separated values) format and includes for each paper the title, the name of the corresponding author, and the abstract. <br>There is also a notebook showing how to group the papers into categories. <br>The Dockerfile shows how to reproduce the environment to run the notebook in a docker container (includes a python data science stack, as well as worldcloud).
DOI: 10.6084/m9.figshare.5497468.v4
title: NIMG Special issue on brain parcellation and segmentation

description: A list of the papers published as part of the Neuroimage Special Issue on Brain Segmentation and Parcellation. <br>The file is in the tsv (tabular-separated values) format and includes for each paper the title, the name of the corresponding author, and the abstract. <br>There is also a notebook showing how to group the papers into categories. <br>The Dockerfile shows how to reproduce the environment to run the notebook in a docker container (includes a python data science stack, as well as worldcloud).
DOI: 10.6084/m9.figshare.5497468.v5
title: NIMG Special issue on brain parcellation and segmentation

description: A list of the papers published as part of the Neuroimage Special Issue on Brain Segmentation and Parcellation. <br>The file is in the tsv (tabular-separated values) format and includes for each paper the title, the name of the corresponding author, and the abstract. <br>There is also a notebook showing how to group the papers into categories. <br>The Dockerfile shows how to reproduce the environment to run the notebook in a docker container (includes a python data science stack, as well as worldcloud).
DOI: 10.6084/m9.figshare.5497468.v7
title: NIMG Special issue on brain parcellation and segmentation

description: A list of the papers published as part of the Neuroimage Special Issue on Brain Segmentation and Parcellation. <br>The file is in the tsv (tabular-separated values) format and includes for each paper the title, the name of the corresponding author, and the abstract. <br>There is also a notebook showing how to group the papers into categories. <br>The Dockerfile shows how to reproduce the environment to run the notebook in a docker container (includes a python data science stack, as well as worldcloud).
DOI: 10.6084/m9.figshare.5497468.v6
title: NIMG Special issue on brain parcellation and segmentation

description: A list of the papers published as part of the Neuroimage Special Issue on Brain Segmentation and Parcellation. <br>The file is in the tsv (tabular-separated values) format and includes for each paper the title, the name of the corresponding author, and the abstract. <br>There is also a notebook showing how to group the papers into categories. <br>The Dockerfile shows how to reproduce the environment to run the notebook in a docker container (includes a python data science stack, as well as worldcloud).
DOI: 10.6084/m9.figshare.5497111
title: Analysis of Chlorinated Hydrocarbon Concentration Data from Thousands of Groundwater Wells Using a Density-Based Cluster Analysis Approach

description: A meta-analysis of historic groundwater chlorinated hydrocarbon plume data from approximately 17,000 monitoring wells across California, represented in the state’s publically-accessible Groundwater Monitoring and Assessment (GAMA) database, was conducted with the assistance of a machine learning approach, density (DBSCAN), that divided the data into individual sites and plumes. The python 2.7 script used to extract and process the data can be found at https://github.com/NumericalEnvironmental/VOC_Plume_Meta-analysis_with_Python.
DOI: 10.6084/m9.figshare.5497111.v1
title: Analysis of Chlorinated Hydrocarbon Concentration Data from Thousands of Groundwater Wells Using a Density-Based Cluster Analysis Approach

description: A meta-analysis of historic groundwater chlorinated hydrocarbon plume data from approximately 17,000 monitoring wells across California, represented in the state’s publically-accessible Groundwater Monitoring and Assessment (GAMA) database, was conducted with the assistance of a machine learning approach, density (DBSCAN), that divided the data into individual sites and plumes. The python 2.7 script used to extract and process the data can be found at https://github.com/NumericalEnvironmental/VOC_Plume_Meta-analysis_with_Python.
DOI: 10.6084/m9.figshare.5497027
title: Total Results - Parental exposure to copper: DNA damage and larval impairment in Oreochromis niloticus

description: Results of article: Parental exposure to copper: DNA damage and larval impairment in <i>Oreochromis niloticus </i>
DOI: 10.6084/m9.figshare.5497027.v1
title: Total Results - Parental exposure to copper: DNA damage and larval impairment in Oreochromis niloticus

description: Results of article: Parental exposure to copper: DNA damage and larval impairment in <i>Oreochromis niloticus </i>
DOI: 10.6084/m9.figshare.5496952.v1
title: Defining Program Effects: A Distribution-Based Perspective

description: In an age of accountability, it is critical to define and estimate the effects of teacher education and professional development programs on student learning in ways that allow stakeholders to explore potential reasons for what is observed and to enhance program quality and fidelity. Across the suite of statistical models used for program evaluation, researchers consistently measure program effectiveness using the coefficients of fixed program effects. We propose that program effects are best characterized not as a single effect to be estimated, but as a distribution of teacher-specific effects. In this article, we first discuss this approach and then describe one way it could be used to define and estimate program effects within a value-added modeling context. Using an example dataset, we demonstrate how program effect estimates can be obtained using the proposed methodology and explain how distributions of these estimates provide additional information and insights about programs that are not apparent when only looking at average effects. By examining distributions of teacher-specific effects as proposed, researchers have the opportunity to more deeply investigate and understand the effects of programs on student success.
DOI: 10.6084/m9.figshare.5493184
title: Distinct transcriptional and processing regulations control miR167a level in tomato during stress

description: Besides their definite role in plant developmental processes miR167 also serve as mediator of stress response. Although differential expression of miR167 occurs during stresses, the regulatory-mechanism of biogenesis remained elusive. Therefore, using tomato as the model plant we have explored the mechanism of regulation of miR167a expression during stresses. Fungus or virus infections and exposure to cold stress raised the level of miR167a expression. Whereas, salt, drought and heat treatments resulted in the downregulation, indicating different stresses activated alternative mechanisms for miR167a regulation. Interestingly, the relative expression level of precursors in control versus temperature stressed plants differed from the pattern observed in the mature miR167a expression, suggesting that both transcriptional and processing regulation were important for biogenesis. The promoter-regulatory sequence of the major isoform <i>MIR167a</i> harbours several development and stress-related regulatory sites. Accordingly, promoter assays using transient transformation and transgenic tobacco plants proved stress-dependent regulation of the promoter. Further analyses corroborated the role of tomato DREB2A protein in the transcriptional regulation during temperature stress. Finally, in vitro assays established the importance of processing factors in cold-stress dependent efficient processing of <i>MIR167a</i> precursors. These data confirm distinct role of transcriptional and processing machinery in stress-influenced regulation of tomato miR167a biogenesis.
DOI: 10.6084/m9.figshare.5493181
title: Mutational landscape of RNA-binding proteins in human cancers

description: RNA Binding Proteins (RBPs) are a class of post-transcriptional regulatory molecules which are increasingly documented to be dysfunctional in cancer genomes. However, our current understanding of these alterations is limited. Here, we delineate the mutational landscape of ∼1300 RBPs in ∼6000 cancer genomes. Our analysis revealed that RBPs have an average of ∼3 mutations per Mb across 26 cancer types. We identified 281 RBPs to be enriched for mutations (GEMs) in at least one cancer type. GEM RBPs were found to undergo frequent frameshift and inframe deletions as well as missense, nonsense and silent mutations when compared to those that are not enriched for mutations. Functional analysis of these RBPs revealed the enrichment of pathways associated with apoptosis, splicing and translation. Using the OncodriveFM framework, we also identified more than 200 candidate driver RBPs that were found to accumulate functionally impactful mutations in at least one cancer. Expression levels of 15% of these driver RBPs exhibited significant difference, when transcriptome groups with and without deleterious mutations were compared. Functional interaction network of the driver RBPs revealed the enrichment of spliceosomal machinery, suggesting a plausible mechanism for tumorogenesis while network analysis of the protein interactions between RBPs unambiguously revealed the higher degree, betweenness and closeness centrality for driver RBPs compared to non-drivers. Analysis to reveal cancer-specific Ribonucleoprotein (RNP) mutational hotspots showed extensive rewiring even among common drivers between cancer types. Knockdown experiments on pan-cancer drivers such as SF3B1 and PRPF8 in breast cancer cell lines, revealed cancer subtype specific functions like selective stem cell features, indicating a plausible means for RBPs to mediate cancer-specific phenotypes. Hence, this study would form a foundation to uncover the contribution of the mutational spectrum of RBPs in dysregulating the post-transcriptional regulatory networks in different cancer types.
DOI: 10.6084/m9.figshare.5493184.v1
title: Distinct transcriptional and processing regulations control miR167a level in tomato during stress

description: Besides their definite role in plant developmental processes miR167 also serve as mediator of stress response. Although differential expression of miR167 occurs during stresses, the regulatory-mechanism of biogenesis remained elusive. Therefore, using tomato as the model plant we have explored the mechanism of regulation of miR167a expression during stresses. Fungus or virus infections and exposure to cold stress raised the level of miR167a expression. Whereas, salt, drought and heat treatments resulted in the downregulation, indicating different stresses activated alternative mechanisms for miR167a regulation. Interestingly, the relative expression level of precursors in control versus temperature stressed plants differed from the pattern observed in the mature miR167a expression, suggesting that both transcriptional and processing regulation were important for biogenesis. The promoter-regulatory sequence of the major isoform <i>MIR167a</i> harbours several development and stress-related regulatory sites. Accordingly, promoter assays using transient transformation and transgenic tobacco plants proved stress-dependent regulation of the promoter. Further analyses corroborated the role of tomato DREB2A protein in the transcriptional regulation during temperature stress. Finally, in vitro assays established the importance of processing factors in cold-stress dependent efficient processing of <i>MIR167a</i> precursors. These data confirm distinct role of transcriptional and processing machinery in stress-influenced regulation of tomato miR167a biogenesis.
DOI: 10.6084/m9.figshare.5493181.v1
title: Mutational landscape of RNA-binding proteins in human cancers

description: RNA Binding Proteins (RBPs) are a class of post-transcriptional regulatory molecules which are increasingly documented to be dysfunctional in cancer genomes. However, our current understanding of these alterations is limited. Here, we delineate the mutational landscape of ∼1300 RBPs in ∼6000 cancer genomes. Our analysis revealed that RBPs have an average of ∼3 mutations per Mb across 26 cancer types. We identified 281 RBPs to be enriched for mutations (GEMs) in at least one cancer type. GEM RBPs were found to undergo frequent frameshift and inframe deletions as well as missense, nonsense and silent mutations when compared to those that are not enriched for mutations. Functional analysis of these RBPs revealed the enrichment of pathways associated with apoptosis, splicing and translation. Using the OncodriveFM framework, we also identified more than 200 candidate driver RBPs that were found to accumulate functionally impactful mutations in at least one cancer. Expression levels of 15% of these driver RBPs exhibited significant difference, when transcriptome groups with and without deleterious mutations were compared. Functional interaction network of the driver RBPs revealed the enrichment of spliceosomal machinery, suggesting a plausible mechanism for tumorogenesis while network analysis of the protein interactions between RBPs unambiguously revealed the higher degree, betweenness and closeness centrality for driver RBPs compared to non-drivers. Analysis to reveal cancer-specific Ribonucleoprotein (RNP) mutational hotspots showed extensive rewiring even among common drivers between cancer types. Knockdown experiments on pan-cancer drivers such as SF3B1 and PRPF8 in breast cancer cell lines, revealed cancer subtype specific functions like selective stem cell features, indicating a plausible means for RBPs to mediate cancer-specific phenotypes. Hence, this study would form a foundation to uncover the contribution of the mutational spectrum of RBPs in dysregulating the post-transcriptional regulatory networks in different cancer types.