cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.kb8js06/6
title: Movie S6

description: Original images captured by one of the four cameras and the reconstructed birds’ 3D movement trajectories for flock #6.
DOI: 10.5061/dryad.kb8js06/7
title: Data S1

description: Bird id number, position, time, velocity, acceleration, and wingbeat frequency at every time step for flocks #1 to 6.
DOI: 10.5061/dryad.nk3b5k8/28
title: 10c_predict_GLM
DOI: 10.5061/dryad.nk3b5k8/29
title: 9bc_predict_GLM
DOI: 10.5061/dryad.nk3b5k8/30
title: 11b_predict_GLM
DOI: 10.5061/dryad.nk3b5k8/31
title: 12c_predict_GLM
DOI: 10.5061/dryad.nk3b5k8/32
title: 12b_predict_GLM
DOI: 10.5061/dryad.qb10764/1
title: Calculating Maximum Morphine Equivalent Daily Dose from Prescription Directions Data Set

description: This de-identified dataset was used in the publication "Calculating Maximum Morphine Equivalent Daily Dose from Prescription Directions for Use in the Electronic Health Record" to demonstrate a method a calculating Maximum Morphine Equivalent Daily Dose (MEDD) from prescription sigs.
DOI: 10.5061/dryad.sc20b6g/1
title: Lloren_etal_2019_JEcol

description: This data package contains two types of spreadsheets: (1) Matrices showing the abundance of each plant species observed in our study at each plot for each year (2) Summary table for each plot in our study
DOI: 10.5061/dryad.t60vh3p/1
title: SNPs_allSamples_refBased

description: VCF-File of all samples from the reference based pipeline
DOI: 10.5061/dryad.t60vh3p/3
title: SNPs_nemorensis_refBased

description: VCF file for Arabis nemorensis samples from the reference based pipeline
DOI: 10.5061/dryad.t60vh3p/4
title: SNPs_nemorensis_denovo

description: VCF file of Arabis nemorensis samples from the de novo pipeline
DOI: 10.5061/dryad.t60vh3p/5
title: SNPs_sagittata_refBased

description: VCF file of Arabis sagittata samples from the reference-based pipeline
DOI: 10.5061/dryad.t60vh3p/6
title: SNPs_sagittata_denovo

description: VCF file of Arabis sagittata samples from the de novo pipeline
DOI: 10.5061/dryad.t60vh3p/7
title: Population assignment

description: Table to assign each sample to a population
DOI: 10.5061/dryad.t60vh3p/8
title: Population information

description: Table giving additional information about populations
DOI: 10.5061/dryad.t60vh3p/9
title: R Markdown file

description: R Markdown file of the statistical analysis of the VCF files
DOI: 10.5061/dryad.t662q27/1
title: species_data

description: File with data on species presence and absence in plots at different riparian elevations at sites along the Vindel River in northern Sweden. Species names and inundation data for the plots are explained in a separate worksheet. Refer to the associated paper for explanation of the inundation data and scenarios for the future.
DOI: 10.17632/8wmxhtxfbh.1
title: Data for: Brazilian financial market: an application of the principal component analysis on dependent data

description: These data represent the stock values of 33 companies that make up the São Paulo Stock Exchange Index (IBOVESPA), from January 2006 to June 2018. Data were downloaded from Investing.com and BM&FBOVESPA at URL’s https://br.investing.com/ and http://www.b3.com.br/.
DOI: 10.17632/925wjhrzyk.1
title: Get well soon card Data Entry file

description: Excel file of GET WELL SOON CARD: Self Help Program to Overcome Hospital based Financial Barrier
DOI: 10.17632/93726brcbw.5
title: Clinical study of the innervation of the anterior hard palate

description: The conventional nasopalatine nerve block (NPNB) is commonly used to obtain anaesthesia in the anterior portion of the palate. Unfortunately, NPNB cannot always yield a satisfied anesthesia effect at the palatal gingiva of anterior teeth, which reflects the controversy about the innervation of this area and the distribution of nasopalatine nerve. The present research was designed to study the innervation of the anterior part of hard palate (AHP) in patients of different ages. 182 children with mixed dentition and 219 patients with permanent dentition who were indicated to local anesthesia during treatment were included into this study. Patients in mixed dentition were randomly divided into group A1 and group A2, and received NPNB or bilateral greater palatine nerve block (BGPNB) respectively. Patients in permanent dentition were divided into adolescent group (range 13-18 years) and adult group (over the age of 19 years), and all accepted BGPNB. Using Von Frey hairs, the anesthetic efficiency were examined by testing the pain sensation of the palatal mucosa pre- and post-anesthetically. All the data were analyzed by Student's t tests and Pearson's chi-square tests. For children with mixed dentition, BGPNB was likely to result better anesthesia at the AHP than NPNB did (p&lt;0.05), except the incisive papilla, in which the anesthetic effect of the NPNB was significantly superior to that of the BGPNB. Meanwhile, BGPNB was found more effective for anesthesia of AHP in children than that in people with permanent dentition, i.e., adolescents and adults (p&lt;0.05). However, there was no significant difference in anesthetic effect of AHP between adolescent and adult. The results of present study indicated that the sensation of anterior hard palate is mainly dominated by the greater palatine nerve in childhood and gradually shifts to nasopalatine nerve accompanied with the development of maxilla and tooth replacement. It seemed that the nasopalatine nerve undergoes a process of secondary development through adolescence. Such converting of innervation should be accounted in local anesthesia of AHP area.
DOI: 10.5061/dryad.1cs77qn/4
title: Phylogenetic trees of the Restionaceae of the Cape Floristic Region

description: The zip-archive contains the MCC tree of the Restionaceae (in the file "mcc_tree.nex") and a random sample of 100 trees from the posterior of our phylogenetic analysis (in the file "tree_samples_100.nex").
DOI: 10.5061/dryad.2c6951v/1
title: performance.xlsx

description: Data obtained from a common garden temperature gradient experiment with two subpopulations of anadromous pike (Esox lucius) from the Baltic Sea. In the experiment, eggs were artificially fertilized, and a split-brood design with three different temperature treatments was used to test for effects of temperature during early fry development. Four offspring performance measures (hatching success, fry survival during the first 5 days, day degrees until hatching, and fry body length 5 days post hatch) were quantified. Data on hatching success and fry survival is presented in ‘performance.xlsx’, data on day degrees until hatching in ‘daydegrees.xlsx’, and data on fry body length in ‘lengths.xlsx’.
DOI: 10.5061/dryad.2c6951v/2
title: daydegrees.xlsx

description: Data obtained from a common garden temperature gradient experiment with two subpopulations of anadromous pike (Esox lucius) from the Baltic Sea. In the experiment, eggs were artificially fertilized, and a split-brood design with three different temperature treatments was used to test for effects of temperature during early fry development. Four offspring performance measures (hatching success, fry survival during the first 5 days, day degrees until hatching, and fry body length 5 days post hatch) were quantified. Data on hatching success and fry survival is presented in ‘performance.xlsx’, data on day degrees until hatching in ‘daydegrees.xlsx’, and data on fry body length in ‘lengths.xlsx’.
DOI: 10.5061/dryad.2c6951v/3
title: lengths.xlsx

description: Data obtained from a common garden temperature gradient experiment with two subpopulations of anadromous pike (Esox lucius) from the Baltic Sea. In the experiment, eggs were artificially fertilized, and a split-brood design with three different temperature treatments was used to test for effects of temperature during early fry development. Four offspring performance measures (hatching success, fry survival during the first 5 days, day degrees until hatching, and fry body length 5 days post hatch) were quantified. Data on hatching success and fry survival is presented in ‘performance.xlsx’, data on day degrees until hatching in ‘daydegrees.xlsx’, and data on fry body length in ‘lengths.xlsx’.
DOI: 10.5061/dryad.2gh0ht2/1
title: four_locus_dataset.nex
DOI: 10.5061/dryad.2gh0ht2/2
title: four_locus_dataset.phy
DOI: 10.5061/dryad.2gh0ht2/3
title: leafy_dataset.nex
DOI: 10.5061/dryad.2gh0ht2/4
title: leafy_dataset.phy
DOI: 10.5061/dryad.2gh0ht2/5
title: waxy_dataset.nex
DOI: 10.5061/dryad.2gh0ht2/6
title: waxy_dataset.phy
DOI: 10.5061/dryad.2kk56sp/2
title: Raw date
DOI: 10.5061/dryad.37g4f36/1
title: Huang_2019_JOH_DGrantii_dryad

description: Input files, results, and associated R codes for plotting results for PCA, RADPainter, and Stairway plot analyses. Output files from pyRAD analysis: allele, loci, and str.
DOI: 10.5061/dryad.45m46kp/1
title: Data for Zhou et al. Functional Ecology

description: The data include root traits for grassland species under water addition and control conditions; root traits for two dominant species across precepitation gradients; annual precipitation across the research areas.
DOI: 10.5061/dryad.4nb12g2/10
title: Nuclear detection probabilities 5 dpf (samples 1-5)

description: Nuclear detection probabilities of each 5 dpf sample analyzed provided as individual 32-bit multi-page tiff z-stacks. We recommend opening in Fiji (Fiji Is Just ImageJ).
DOI: 10.5061/dryad.4nb12g2/11
title: 5 dpf (samples 1-5) anatomical brain region segmentations

description: Segmentations of anatomical brain regions in the same space as nuclear detections are provided herein.
DOI: 10.5061/dryad.4nb12g2/7
title: Registration Pipeline

description: Files are provided for registering our manually segmented 5-dpf fish onto our other samples. Uses elastix/transformix, which can be found here: http://elastix.isi.uu.nl/
DOI: 10.5061/dryad.4nb12g2/8
title: Nuclear Detection Validation

description: Validation of our nuclear detection pipeline is provided, scripts and user segmentations are provided herein.
DOI: 10.5061/dryad.4nb12g2/9
title: Nuclei positioning and characteristics

description: Nuclei position and morphological characteristics provided by simpleITK analysis are provided herein as .csv files.
DOI: 10.5061/dryad.57704ft/1
title: bd-symm_supplementary

description: Swapping Birth and Death: Symmetries and Transformations in Phylodynamic Models. Supplementary Material - Proofs of Theorems.
DOI: 10.5061/dryad.8f0r6j9/1
title: Durmaz et al foxo raw data

description: Explanation of raw data: We measured egg-to-adult survival (measured as proportion survival), femur length (measured in mm), wing area (measured in mm2), thorax length (measured in mm), survival upon starvation (measured in hr) and triglyceride content (measured in µg) for outbred populations of Drosophila melanogaster which were fixed for either the low- (LL) or high-latitude (HL) allele for foxo, a central transcription factor in insulin signaling pathway. Our main goal was to investigate the phenotypic effects of this clinal 2-SNP variant in foxo and its contribution to clinal life-history traits and life-history plasticity. For details, see our paper Durmaz et al. (2019) in Evolution, entitled “A clinal polymorphism in the insulin signaling transcription factor foxo contributes to life-history adaptation in Drosophila". For additional details, please contact Esra Durmaz (esra.durmaz@unifr.ch) or Thomas Flatt (thomas.flatt@unifr.ch).
DOI: 10.5061/dryad.8fs1505/1
title: Raw data file
DOI: 10.5061/dryad.8g104tc/1
title: Miller_OLdata_DRYAD

description: This file contains eight columns with headers. Please note in the analyses the natural log was taken of the morphological measurements, and pronotum width was cubed before taking the natural log.
DOI: 10.5061/dryad.9r1h22d/1
title: LTBI global prevalence meta-analysis 2019 ERJ

description: Latent tuberculosis infection (LTBI) global prevalence survey database from meta-analysis published 2019 in European Respiratory Journal. Database contains included studies and the numbers needed for data analysis including PMID, publication year, first author, study design, study date etc.
DOI: 10.5061/dryad.b47n414/1
title: Matrices of plant-frugivore interactions

description: Binary matrices of interactions between frugivorous birds (rows) and plants (columns) from three sites in Parque Estadual Intervales (bottom of valley, middle slope and hilltop), as well as the combined matrix that combines data from the three sites. Presences of interaction between pairs of species are depicted by 1, while absences of interaction are depicted by 0.
DOI: 10.5061/dryad.bg7pd54/3
title: Morphotype catalogue appendix

description: This is an exhaustive description of all 42 angiosperm leaf morphotypes currently identified from the Redmond flora to conduct palaeoclimate analyses. Each morphotype has its size class, margin, tooth and lobe characters (if necessary), base, apex, and venation characters. In addition, each morphotype's quality index and the curated specimens that represent it are presented. Those that have been the object of a more systematic study in the past have a systematic affinity. In some cases, new specimens have been assigned to an already existing morphotype or new specimens are sufficiently distinct morphologically to warrant the creation of a new morphotype altogether. In those cases, a discussion is provided to explain these decisions.
DOI: 10.5061/dryad.c0pv774/1
title: TableS1_SuppInfo_AllSpecimens

description: Details of all specimens used in phylogeny and specimens used for COI vouchers.
DOI: 10.5061/dryad.c6v3838/1
title: Macroinvertebrate biomass and abundance

description: Data corresponding to the analyses of macroinvertebrate abundance (individuals min-1) and biomass (mg dry mass min-1) when focal fish were age 0+ (May-June 2016) and age 1+ (March 2017) in streams with low (0) and high (1) parental nutrient levels. Please see Table S1 in Supplementary Information for further details of each stream.
DOI: 10.5061/dryad.c6v3838/2
title: Salmon focal cohort - density and biomass (age 0+ & 1+)

description: Data corresponding to the analyses of density (individuals m-2) and biomass (g m-2) of juvenile Atlantic salmon (focal cohort) captured at age 0+ (July 2016) and age 1+ (July 2017) in streams with low (0) and high (1) parental nutrient levels. Please see Supplementary Information for further details of each stream.
DOI: 10.5061/dryad.c6v3838/3
title: Salmon focal cohort - fork length & body mass (age 0+)

description: Data corresponding to the analyses of fork length (mm) and body mass (g) of juvenile Atlantic salmon (focal cohort) at age 0+ in streams with low (0) and high (1) parental nutrient levels. Please see Supplementary Information for further details of each stream.
DOI: 10.5061/dryad.c87g350/1
title: At sea vocalizations of foraging Cape gannets

description: Table with acoustic measurements of vocalizations.
DOI: 10.5061/dryad.gc90861/1
title: Kim-Bartel-Gratton-Data

description: These data are the average stable isotope values for ants, plants, and soil used in the study. We also include information on the abundances of ants and leaf hoppers collected at each site.
DOI: 10.5061/dryad.hk3238q/1
title: SSR_data_from_each_of_7_islands

description: SSR (microsatellite) genotypes for 9 loci from Metrosideros populations/communities from each of 5 Hawaiian Islands, plus Tahiti and American Samoa. Taxon name, leaf type (glabrous vs. pubescent) and location (where available) of each sample are included.
DOI: 10.5061/dryad.jc40j5v/1
title: Supplemental 1 - Avizo porosity data

description: Porosity data obtained from XRM scans
DOI: 10.5061/dryad.jc40j5v/2
title: supplemental 2 - barnacle plate video

description: Video illustrating the individual plates in the barnacle exoskeleton
DOI: 10.5061/dryad.jc40j5v/3
title: Supplemental 3 - ala VIDEO
DOI: 10.5061/dryad.jc40j5v/4
title: Supplemental 4 - opposite joint video

description: Video highlighting the opposite ala joint of the barnacle structure
DOI: 10.5061/dryad.k200rt4/1
title: Heteroponera_dentinodis

description: UCEs Fasta file
DOI: 10.5061/dryad.k200rt4/2
title: Hylomyrma_reitteri

description: UCEs Fasta file.
DOI: 10.5061/dryad.k200rt4/3
title: Megalomyrmex_drifti

description: UCEs Fasta file
DOI: 10.5061/dryad.k200rt4/4
title: Octostruma_rugifera
DOI: 10.5061/dryad.k200rt4/5
title: Octostruma_stenognatha

description: UCEs Fasta file
DOI: 10.5061/dryad.k200rt4/6
title: Odontomachus_meinerti

description: UCEs Fasta file
DOI: 10.5061/dryad.k200rt4/7
title: Strumigenys_crassicornis

description: UCEs Fasta file
DOI: 10.5061/dryad.kb8js06/11
title: code
DOI: 10.5061/dryad.kb8js06/8
title: Data S2

description: Bird id number, position, time, velocity, acceleration, and wingbeat frequency at every time step for 305 isolated pairs (bird ids 1&2, 3&4, 5&6, and so on are two birds from a same pair).
DOI: 10.5061/dryad.m73k28k/1
title: Acoustic telemetry detections_Dryad

description: Detections of Atlantic cod using acoustic telemetry
DOI: 10.5061/dryad.m73k28k/2
title: Station_attributes_Dryad

description: Information; co-ordinates, depth, name of the stations / acoustic receivers
DOI: 10.5061/dryad.m73k28k/3
title: Environmental data_Dyrad

description: Daily data from weather station. e.g. sea surface temperature, wind speed/direction
DOI: 10.5061/dryad.nr75483/1
title: Multiscale model of white-nose syndrome code published

description: This R script contains the code that generates simulations, distills output, and draws figures. All other files in this archive (except for WNSBats_PowerLaw.R) are output of parts of this code. They have been included here because they represent the summarization of computationally intensive simulations that could not be included in the archive due to file size limitations. Some of the figures require these "raw" output files, if needed an alternate method of sharing can be arranged with the authors.
DOI: 10.5061/dryad.nr75483/2
title: WNSBats_PowerLaw

description: This R script tries fitting alternative distributions to the bat dispersal data from Norquay et al. 2013. Conclude that a uniform distribution is as consistent as other possibilities. It also looks at alternative distributions for NY little brown bat population sizes from Turner et al. 2011, this can then be used to produce random versions of the regional bat population.
DOI: 10.5061/dryad.nr75483/3
title: README

description: Describes scripts and the outputs contained in .zip file
DOI: 10.5061/dryad.nr75483/4
title: Multiscale model of white-nose syndrome output

description: Summarized output from the simulations.
DOI: 10.5061/dryad.qm364n4/1
title: De novo genome assemblies of lemon selected and wild-type selected mites from a segregating T. kanzawai population and its lemon and wild-type parent.

description: The segregating mite population was generated by crossing Jp-inbred-lemon to Jp2-WT and was used to genetically map the lemon phenotype in Tetranychus kanzawai. After approximately 10-12 generations, a total of three replicates were collected that consisted of 1100, 900 and 500 adult lemon females. In parallel, 1500 wild-type females were selected and pooled into a single sample. From these four populations and the two parental strains, genomic DNA was extracted and assembled using the CLC Genomics Workbench 9.0.1 (https://www.qiagenbioinformatics.com/).
DOI: 10.5061/dryad.qm364n4/2
title: Localized de novo transcriptome assemblies of CYP384A1 of a T. kanzawai population that segregates for lemon pigmentation.

description: RNA was extracted from 110 lemon and wild-type adult females in two replicates using an RNeasy Minikit (Qiagen). RNA reads that aligned to CYP384A1 were assembled into contigs using Trinity 2.5.1.
DOI: 10.5061/dryad.qm364n4/3
title: β-carotene and astaxanthin levels detected by HPLC in wild-type and lemon T. kanzawai.

description: For each treatment 30 females were collected in three replicates and homogenized in 1 ml of acetone. The homogenate was filtrated using a glass syringe with a membrane possessing a pore size of 0.45 μm. The filtrate was dried under a nitrogen gas flow and dissolved in 300 μl of methanol. Five μl of the solution was used for HPLC analysis. Carotenoids were quantified by monitoring the absorbance at 450 nm. External calibration curves were constructed with authentic standards.
DOI: 10.5061/dryad.v19s04p/1
title: data
DOI: 10.17632/6mbjnw7kc6.1
title: Data for: "Replication of Mismatch Research: Ayres, Brooks, and Ho"

description: Panel data on some 27,000 students who entered American law schools in 1991. Codebook is Linda Wightman, User's Guide, LSAC National Longitudinal Data File (1999).
DOI: 10.17632/8fcmtvhjkv.1
title: Data for: Acute 5 Hz deep brain stimulation of the lateral habenula is associated with depressive-like behavior in male wild-type Wistar rats
DOI: 10.17632/9rssvrv5pn.1
title: Data for: Hydrodynamic Model of radionuclide dispersion during accident of Bushehr Nuclear Power Plant

description: bathymetry of Persian Gulf
DOI: 10.17632/wk6zzh6ytv.1
title: Data for: How Do Users Experience the Interaction with an Immersive Screen?
DOI: 10.5061/dryad.0c3gf6j/1
title: Simulations

description: Supporting Information Mathematica simulation files.
DOI: 10.5061/dryad.474hv77/1
title: South African Formally Proclaimed Protected Areas (Reserves)

description: Formal protected areas (PAs) in South Africa (ones that are counted towards the total conservation estate) are defined according to the National Environmental Management: Protected Areas Act (2003), and include national parks, special nature reserves, nature reserves and protected environments (Department of Environmental Affairs 2015). World heritage sites and mountain catchment areas are also included in this act, though they are declared and governed by their own legislation (Department of Environmental Affairs 2015). World heritage sites were omitted from this dataset because their core areas overlap with other PAs. Protected environments can also overlap with other PA types and were thus excluded.  All types of PAs can exist on private land (Cumming & Daniels 2014). 

Our final PA boundary dataset comprised GIS data, consolidated using ArcGIS 10.5 (ESRI 2017) from the national PA register (South African PA Dataset; PACA), provincial conservation authorities, and national gazettes (see Table S1.2, described in DEA 2013). PAs not included in PACA, but designated in other datasets were systematically added to the master PA data layer, after checking the online gazettes (accessed through https://www.sabinet.co.za) for any relevant PA degrading, downsizing or degazettement (PADDDing, Mascia & Pailler 2011; Mascia et al. 2014). A big data gap existed, however, due to older private nature reserves that were not well established in the national PA register. Since these areas do officially form part of the country’s conservation estate (Cumming & Daniels 2014), we mapped them by matching the farm names, numbers and portions designated in both current and retrospective provincial gazettes with those in a farm-portion-level cadastral dataset, obtained from AfriGIS (2012). Identified polygons were extracted from the cadastral dataset, and attribute data were edited to reflect the declaration date (and degazettement date, where appropriate), its gazette number, and ownership details. All datasets were projected to Albers Equal Area and consolidated using this projection. More details, references and metadata descriptions can be found in the “README” file.
DOI: 10.5061/dryad.5qv9750/1
title: foxoXaopXebmXfre_luciferaseReporter

description: FR = firefly luciferase / renilla, zeromedian = median of promoter without TFs, FC = fold-change relative to median i.e. (B-A) / A where A=median, B=value-i
DOI: 10.5061/dryad.5qv9750/2
title: aop X pntP1_luciferase

description: columns as per other luciferase data.
DOI: 10.5061/dryad.5qv9750/3
title: PntP1Xstarvation_TAG&mass

description: tag_weight = tag µg / mg fly
DOI: 10.5061/dryad.5qv9750/4
title: PntP1_starvation_survival

description: Deaths of flies expressing PntP1 in gut+fatbody. PntP1 was induced in +RU condition for 1 week before starvation, RU was included in agarose food.