cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8321165
title: Jabs_m6a

description: <br>The target files associates a condition to each sample associated to the study key 1a0e447618723 on shaman.pasteur.fr. We can distinct the colonisation and the constitution.A contrast file is also available for the interaction Experimental_condition+Experimental_variable
DOI: 10.6084/m9.figshare.8321168.v1
title: Supporting information - The impact of political knowledge, cognitive load, decision-making strategies, and gender on correct voting

description: - Dataset from an experimental study on correct voting (includes both the experiment dataset and parties dataset based on which mock parties were formed)- R script used for analysis- Parties statements - details on each mock party- Examples of strategies employed by participants
DOI: 10.6084/m9.figshare.8321168.v2
title: Supporting information - The impact of political knowledge, cognitive load, decision-making strategies, and gender on correct voting

description: - Dataset from an experimental study on correct voting (includes both the experiment dataset and parties dataset based on which mock parties were formed)- R script used for analysis- Parties statements - details on each mock party- Examples of strategies employed by participants
DOI: 10.6084/m9.figshare.8321165.v1
title: Jabs_m6a

description: The target files associate a condition to each sample associated to the study key 1a0e447618723 on shaman.pasteur.fr. We can disguish the colonisation and the constitution.A contrast file is also available for the interaction Experimental_condition+Experimental_variable
DOI: 10.6084/m9.figshare.8321168.v3
title: Supporting information - The impact of political knowledge, cognitive load, decision-making strategies, and gender on correct voting

description: - Dataset from an experimental study on correct voting (includes both the experiment dataset and parties dataset based on which mock parties were formed)- R script used for analysis- Parties statements - details on each mock party- Examples of strategies employed by participants
DOI: 10.6084/m9.figshare.8321165.v2
title: Jabs_m6a

description: <br>The target files associates a condition to each sample associated to the study key 1a0e447618723 on shaman.pasteur.fr. We can distinct the colonisation and the constitution.A contrast file is also available for the interaction Experimental_condition+Experimental_variable
DOI: 10.6084/m9.figshare.8321165.v3
title: Jabs_m6a

description: <br>The target files associates a condition to each sample associated to the study key 1a0e447618723 on shaman.pasteur.fr. We can distinct the colonisation and the constitution.A contrast file is also available for the interaction Experimental_condition+Experimental_variable
DOI: 10.6084/m9.figshare.8321165.v5
title: Jabs_m6a

description: <br>The target files associates a condition to each sample associated to the study key 1a0e447618723 on shaman.pasteur.fr. We can distinct the colonisation and the constitution.A contrast file is also available for the interaction Experimental_condition+Experimental_variable
DOI: 10.6084/m9.figshare.8321165.v4
title: Jabs_m6a

description: <br>The target files associates a condition to each sample associated to the study key 1a0e447618723 on shaman.pasteur.fr. We can distinct the colonisation and the constitution.A contrast file is also available for the interaction Experimental_condition+Experimental_variable
DOI: 10.6084/m9.figshare.8321051
title: AB_MLST_scheme.txt

description: AB_MLST_scheme.txt
DOI: 10.6084/m9.figshare.8321048
title: OUTCAR_C_1000K

description: Contains VASP OUTCARs files on DFT molecular dynamic simulations of Hafnia (HfO2)
DOI: 10.6084/m9.figshare.8321051.v1
title: AB_MLST_scheme.txt

description: AB_MLST_scheme.txt
DOI: 10.6084/m9.figshare.8321036
title: Supplementary Materials for: Testosterone-mediated behavior shapes the emergent properties of social networks

description: Data and analysis of the collective properties of social networks in relation to testosterone levels.<br>
DOI: 10.6084/m9.figshare.8321048.v1
title: OUTCAR_C_1000K

description: Contains VASP OUTCARs files on DFT molecular dynamic simulations of Hafnia (HfO2)
DOI: 10.6084/m9.figshare.8320892
title: All_Modulus_Results.xlsx

description: This dataset compares the computational apparent modulus of micro-FEM and co-registered QCT-FEMs. The original methodology can be found in:<br>Knowles, Nikolas K., et al. "Development of a validated glenoid trabecular density-modulus relationship." <i>Journal of the mechanical behavior of biomedical materials</i> 90 (2019): 140-145.<br>
DOI: 10.6084/m9.figshare.8320892.v1
title: All_Modulus_Results.xlsx

description: This dataset compares the computational apparent modulus of micro-FEM and co-registered QCT-FEMs. The original methodology can be found in:<br>Knowles, Nikolas K., et al. "Development of a validated glenoid trabecular density-modulus relationship." <i>Journal of the mechanical behavior of biomedical materials</i> 90 (2019): 140-145.<br>
DOI: 10.25392/leicester.data.8320871
title: Furi JB00370-19 Supplementary data.pdf

description: Supplementary data for JB00370-19 Furi et al., Methylation warfare: interaction of pneumococcal bacteriophages with their host. submitted to Journal of Bacteriology<br>
DOI: 10.25392/leicester.data.8320871.v1
title: Furi JB00370-19 Supplementary data.pdf

description: Supplementary data for JB00370-19 Furi et al., Methylation warfare: interaction of pneumococcal bacteriophages with their host. submitted to Journal of Bacteriology<br>
DOI: 10.6084/m9.figshare.8320775
title: Raw data for "Development of an IgY-based lateral flow immunoassay for detection of fumonisin B in maize"

description: <b>Dataset 1. The raw data associated with this study. </b>Excel file includes quantification of signal intensities of lateral flow test strips and quantification of FB<sub>1</sub> and FB<sub>2</sub> from HPLC-MS output.<br><b>Dataset 2.</b> <b>The raw data associated with this study. </b>PowerPoint file includes raw scans of lateral flow test strips and HPLC-MS chromatograms of naturally contaminated samples for quantification of FB1 and FB2.<br><b>Dataset 3. The raw data associated with this study. </b>Excel file includes quantification of signal intensities of lateral flow test strips and quantification of FB1 and FB2 from HPLC-MS output.<br><b>Ethics Approval:</b> an ethics approval for animal use conducted in this study <br>
DOI: 10.6084/m9.figshare.8320775.v1
title: Raw data associated with the disease

description: <b>Dataset 1. The raw data associated with this study. </b>Excel file includes quantification of signal intensities of lateral flow test strips and quantification of FB<sub>1</sub> and FB<sub>2</sub> from HPLC-MS output.<br><b>Dataset 2.</b> <b>The raw data associated with this study. </b>PowerPoint file includes raw scans of lateral flow test strips and HPLC-MS chromatograms of naturally contaminated samples for quantification of FB1 and FB2.<br>
DOI: 10.6084/m9.figshare.8320700
title: Sorption experiment

description: <br><br>Effects of contact time on adsorption capacity of Cu(II) onto different adsorbents (adsorbent dosage= 0.5 g, contact time = 5, 10, 15, 25, 35, 50, 65 h, initial Cu(II) concentration = 300 mg L-1, initial solution pH = 5.0 ± 0.1, temperature = 25°C).Plots for the intra-particle diffusion, Pseudo-first-order and Pseudo-second-order sorption kinetics of Cu(II) onto different adsorbents.<br>These data were measured for effect of initial Cu(II) concentration on adsorption capacity of Cu(II) onto different adsorbents (adsorbent dosage= 0.5 g, initial Cu(II) concentration = 10, 50, 100, 300, 500, 700 mg L-1, initial solution pH = 5.0 ± 0.1, contact time = 25 h, temperature = 25°C), and plots for Langmuir and Freundlich isotherms for adsorption of Cu(II) onto different adsorbents (The legends of “Freundlich” are the same with that of “Langmuir”).<br>Thermodynamic parameters for the adsorption of Cu(II) onto different adsorbents.<br>
DOI: 10.6084/m9.figshare.8320775.v2
title: Raw data for "Development of an IgY-based lateral flow immunoassay for detection of fumonisin B in maize"

description: <b>Dataset 1. The raw data associated with this study. </b>Excel file includes quantification of signal intensities of lateral flow test strips and quantification of FB<sub>1</sub> and FB<sub>2</sub> from HPLC-MS output.<br><b>Dataset 2.</b> <b>The raw data associated with this study. </b>PowerPoint file includes raw scans of lateral flow test strips and HPLC-MS chromatograms of naturally contaminated samples for quantification of FB1 and FB2.<br>
DOI: 10.6084/m9.figshare.8320700.v1
title: Sorption experiment

description: <br><br>Effects of contact time on adsorption capacity of Cu(II) onto different adsorbents (adsorbent dosage= 0.5 g, contact time = 5, 10, 15, 25, 35, 50, 65 h, initial Cu(II) concentration = 300 mg L-1, initial solution pH = 5.0 ± 0.1, temperature = 25°C).Plots for the intra-particle diffusion, Pseudo-first-order and Pseudo-second-order sorption kinetics of Cu(II) onto different adsorbents.<br>These data were measured for effect of initial Cu(II) concentration on adsorption capacity of Cu(II) onto different adsorbents (adsorbent dosage= 0.5 g, initial Cu(II) concentration = 10, 50, 100, 300, 500, 700 mg L-1, initial solution pH = 5.0 ± 0.1, contact time = 25 h, temperature = 25°C), and plots for Langmuir and Freundlich isotherms for adsorption of Cu(II) onto different adsorbents (The legends of “Freundlich” are the same with that of “Langmuir”).<br>Thermodynamic parameters for the adsorption of Cu(II) onto different adsorbents.<br>
DOI: 10.6084/m9.figshare.8320622
title: Transcriptional Profiling of Daily Patterns of mRNA Expression in the C57BL/6J Mouse Cornea

description: <b>Purpose</b>: The purpose of this study was to determine how the transcriptome of the murine cornea adapts to diurnal changes in physiology. <b>Methods</b>: C57BL/6J mice were maintained under a 12-h light/12-h dark (LD) cycle for two weeks. Corneas were collected from euthanized mice at Zeitgeber time (ZT) 0, 3, 6, 9, 12, 15, 18, and 21. Total RNA was extracted and subjected to RNA sequencing (RNA-Seq). A JTK_CYCLE algoithm and other software tools were used to analyze the transcriptional data to determine the periodicity, rhythmicity, and amplitude of the transcripts. Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) were used to analyze the enrichment of cycling transcripts. <b>Results</b>: Approximately 24% of the total transcripts from the murine corneal genome were rhythmically expressed over an LD cycle. GO analysis showed that these cycling genes are primarily involved in cellular and metabolic processes. A KEGG pathway analysis identified 6 branches and 44 pathways that encode the gene outputs necessary for basic cellular functions and processes. More importantly, most of the rhythmic genes between the day and night are enriched in their own unique pathways in addition to some common pathways. Furthermore, most of the rhythmic gene expression was concentrated in the 12-h and 24-h periods. A comparative analysis of GO and KEGG showed large differences in metabolic processes, but not cellular processes. Finally, the murine cornea also rhythmically expressed 11 canonical components of circadian clock genes over an LD cycle at the transcriptional level. <b>Conclusions</b>: One fourth of the corneal transcriptome follows a rhythmic expression pattern involved in basic molecular and cellular mechanisms. This implies that the time of day contributes significantly to the overall temporal organization of the corneal transcriptome.
DOI: 10.6084/m9.figshare.8320775.v3
title: Raw data for "Development of an IgY-based lateral flow immunoassay for detection of fumonisin B in maize"

description: <b>Dataset 1. The raw data associated with this study. </b>Excel file includes quantification of signal intensities of lateral flow test strips and quantification of FB<sub>1</sub> and FB<sub>2</sub> from HPLC-MS output.<br><b>Dataset 2.</b> <b>The raw data associated with this study. </b>PowerPoint file includes raw scans of lateral flow test strips and HPLC-MS chromatograms of naturally contaminated samples for quantification of FB1 and FB2.<br>
DOI: 10.6084/m9.figshare.8320622.v1
title: Transcriptional Profiling of Daily Patterns of mRNA Expression in the C57BL/6J Mouse Cornea

description: <b>Purpose</b>: The purpose of this study was to determine how the transcriptome of the murine cornea adapts to diurnal changes in physiology. <b>Methods</b>: C57BL/6J mice were maintained under a 12-h light/12-h dark (LD) cycle for two weeks. Corneas were collected from euthanized mice at Zeitgeber time (ZT) 0, 3, 6, 9, 12, 15, 18, and 21. Total RNA was extracted and subjected to RNA sequencing (RNA-Seq). A JTK_CYCLE algoithm and other software tools were used to analyze the transcriptional data to determine the periodicity, rhythmicity, and amplitude of the transcripts. Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) were used to analyze the enrichment of cycling transcripts. <b>Results</b>: Approximately 24% of the total transcripts from the murine corneal genome were rhythmically expressed over an LD cycle. GO analysis showed that these cycling genes are primarily involved in cellular and metabolic processes. A KEGG pathway analysis identified 6 branches and 44 pathways that encode the gene outputs necessary for basic cellular functions and processes. More importantly, most of the rhythmic genes between the day and night are enriched in their own unique pathways in addition to some common pathways. Furthermore, most of the rhythmic gene expression was concentrated in the 12-h and 24-h periods. A comparative analysis of GO and KEGG showed large differences in metabolic processes, but not cellular processes. Finally, the murine cornea also rhythmically expressed 11 canonical components of circadian clock genes over an LD cycle at the transcriptional level. <b>Conclusions</b>: One fourth of the corneal transcriptome follows a rhythmic expression pattern involved in basic molecular and cellular mechanisms. This implies that the time of day contributes significantly to the overall temporal organization of the corneal transcriptome.
DOI: 10.6084/m9.figshare.8320775.v4
title: Raw data for "Development of an IgY-based lateral flow immunoassay for detection of fumonisin B in maize"

description: <b>Dataset 1. The raw data associated with this study. </b>Excel file includes quantification of signal intensities of lateral flow test strips and quantification of FB<sub>1</sub> and FB<sub>2</sub> from HPLC-MS output.<br><b>Dataset 2.</b> <b>The raw data associated with this study. </b>PowerPoint file includes raw scans of lateral flow test strips and HPLC-MS chromatograms of naturally contaminated samples for quantification of FB1 and FB2.<br><b>Dataset 3. The raw data associated with this study. </b>Excel file includes quantification of signal intensities of lateral flow test strips and quantification of FB1 and FB2 from HPLC-MS output.<br>
DOI: 10.6084/m9.figshare.8320595
title: Silva et al. Raw Data

description: Raw data from assays to biocontrol <i>Aedes aegypti</i> larvae using the entomopathogenic nematode <i>H. indica</i> strain LPP35<br>
DOI: 10.6084/m9.figshare.8320547
title: Supplementary Material for: Reliability of Histopathology for the Early Recognition of Fibrosis in Traction Alopecia: Correlation with Clinical Severity

description: Traction alopecia (TA) is hair loss caused by prolonged pulling or repetitive tension on scalp hair; it belongs to the biphasic group of primary alopecia. It is non-scarring, typically with preservation of follicular stem cells and the potential for regrowth of early lesions especially if traction hairstyles are stopped. However, the alopecia may become permanent (scarring) and fail to respond to treatment if the traction is excessive and prolonged. Hence, the ability to detect fibrosis early in these lesions could predict patients who respond to treatment. Histopathological diagnosis based on scalp biopsies has been used as a gold standard to delineate various forms of non-scarring alopecia and to differentiate them from scarring ones. However, due to potential discrepant reporting as a result of the type of biopsy, method of sectioning, and site of biopsy, histopathology often tends to be unreliable for the early recognition of fibrosis in TA. In this study, 45 patients were assessed using the marginal TA severity scoring system, and their biopsies (both longitudinal and transverse sections) were systematically assessed by three dermatopathologists, the aim being to correlate histopathological findings with clinical staging. Intraclass correlation coefficients were used to determine the level of agreement between the assessors. We found poor agreement of the identification and grading of perifollicular and interfollicular fibrosis (0.55 [0.23–0.75] and 0.01 [2.20–0.41], respectively), and no correlation could be drawn with the clinical severity score. Better methods of diagnosis are needed for grading and for recognition of early fibrosis in TA.
DOI: 10.6084/m9.figshare.8320547.v1
title: Supplementary Material for: Reliability of Histopathology for the Early Recognition of Fibrosis in Traction Alopecia: Correlation with Clinical Severity

description: Traction alopecia (TA) is hair loss caused by prolonged pulling or repetitive tension on scalp hair; it belongs to the biphasic group of primary alopecia. It is non-scarring, typically with preservation of follicular stem cells and the potential for regrowth of early lesions especially if traction hairstyles are stopped. However, the alopecia may become permanent (scarring) and fail to respond to treatment if the traction is excessive and prolonged. Hence, the ability to detect fibrosis early in these lesions could predict patients who respond to treatment. Histopathological diagnosis based on scalp biopsies has been used as a gold standard to delineate various forms of non-scarring alopecia and to differentiate them from scarring ones. However, due to potential discrepant reporting as a result of the type of biopsy, method of sectioning, and site of biopsy, histopathology often tends to be unreliable for the early recognition of fibrosis in TA. In this study, 45 patients were assessed using the marginal TA severity scoring system, and their biopsies (both longitudinal and transverse sections) were systematically assessed by three dermatopathologists, the aim being to correlate histopathological findings with clinical staging. Intraclass correlation coefficients were used to determine the level of agreement between the assessors. We found poor agreement of the identification and grading of perifollicular and interfollicular fibrosis (0.55 [0.23–0.75] and 0.01 [2.20–0.41], respectively), and no correlation could be drawn with the clinical severity score. Better methods of diagnosis are needed for grading and for recognition of early fibrosis in TA.
DOI: 10.6084/m9.figshare.12869462
title: R0186_20170906a_videos

description: Rat 0186, skilled reaching data collected on 9/6/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.8320484
title: mdv.tpb.original (before screening and cases excluded).sav

description: SPSS data set from TPB pregnancy profiling physical activity paper
DOI: 10.6084/m9.figshare.8320484.v1
title: mdv.tpb.original (before screening and cases excluded).sav

description: SPSS data set from TPB pregnancy profiling physical activity paper
DOI: 10.6084/m9.figshare.8320265
title: Whereof one cannot speak: How language and capture of visual attention interact [dataset]

description: The data include five txt files (tabstop delimited) for to analyses reported in Goller, Choi, Hong & Ansorge (2019).Whereof one cannot speak: How language and capture of visual attention interact. <i>Cognition</i>.<br>The name of the files correspond to the different experiments in the research article.
DOI: 10.6084/m9.figshare.8320214
title: Supplementary Material for: Variability in Palliative Care Use after Intracerebral Hemorrhage at US Hospitals: A Multilevel Analysis

description: <b><i>Background:</i></b> Palliative care (PC) is an essential component of comprehensive care of patients with intracerebral hemorrhage (ICH). In the present study, we sought to characterize the variability of PC use after ICH among US hospitals. <b><i>Methods:</i></b> ICH admissions from hospitals with at least 12 annual ICH cases were identified in the Nationwide Inpatient Sample between 2008 and 2011. We used multilevel logistic regression modeling to estimate between-hospital variance in PC use. We calculated the intraclass correlation coefficient (ICC), proportional variance change, and median OR after accounting for individual-level and hospital-level covariates. <b><i>Results:</i></b> Among 26,791 ICH admissions, 12.5% received PC (95% CI 11.5–13.5). Among the 629 included hospitals, the median rate of PC use was 9.1 (interquartile range 1.5–19.3) per 100 ICH admissions, and 150 (23.9%) hospitals had no recorded PC use. The ICC of the random intercept (null) model was 0.274, suggesting that 27.4% of the overall variability in PC use was due to between-hospital variability. Adding hospital-level covariates to the model accounted for 25.8% of the between-hospital variance observed in the null model, with 74.2% of between-hospital variance remaining unexplained. The median OR of the fully adjusted model was 2.62 (95% CI 2.41–2.89), indicating that a patient moving from 1 hospital to another with a higher intrinsic propensity of PC use had a 2.63-fold median increase in the odds of receiving PC, independent of patient and hospital factors. <b><i>Conclusions:</i></b> Substantial variation in PC use after ICH exists among US hospitals. A substantial proportion of this between-hospital variability remains unexplained even after accounting for patient and hospital characteristics.
DOI: 10.6084/m9.figshare.8320220
title: Supplementary Material for: β-Catenin Expression and Activation in Conjunctival Melanoma

description: <b><i>Purpose:</i></b> To assess the role of the canonical Wnt pathway via activation of β-catenin in tumor progression of conjunctival melanoma. <b><i>Methods:</i></b> β-Catenin localization was assessed by immunohistochemistry in 43 conjunctival nevi, 48 primary acquired melanoses (PAM; conjunctival melanocytic intraepithelial neoplasia), and 44 conjunctival melanomas. Activation of the canonical or the noncanonical Wnt pathway was tested in vitro in 4 conjunctival melanoma cell lines with stimulation of either Wnt5a or Wnt3a. Wound healing assays were performed with Wnt5a. <b><i>Results:</i></b> Nuclear β-catenin expression was found in 16% of the nevi, in 15% of the melanomas, and in 4% of the PAM. Membranous β-catenin expression was identified in all the nevi and PAM and in 97.7% of the melanomas. In vitro, Wnt5a stimulation in the 4 conjunctival melanomas and in 1 skin melanoma cell line did not induce nuclear translocation of β-catenin, nor did it increase cell motility in the wound healing assays. Wnt3a stimulation did not induce nuclear localization of β-catenin in any of the cell lines tested. <b><i>Conclusions:</i></b> In conjunctival melanoma, nuclear localization and activation of β-catenin appear to be limited, suggesting that inhibition of ARF6, responsible for β-catenin activation, in subsets of skin melanoma may not represent a treatment option for this tumor. In vitro, Wnt3a or Wnt5a did not induce nuclear β-catenin localization.