cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/nys-5dq-frw
title: Xerolenta obvia obvia (Menke, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mee-ak8-cpd
title: Arianta arbustorum arbustorum (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qa0-15k-6bp
title: Zonitoides nitidus (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3yg-6l1-4v3
title: Monacha haussknechti (O. Boettger, 1886)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ksr-xkh-csn
title: Flexopecten flexuosus (Poli, 1795)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/enf-ayh-62v
title: Trochulus hispidus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vdq-h9b-3de
title: Megalacron ambrosia (Angas, 1868)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e14-3pe-p2g
title: Oxychilus cellarius (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6s2-eg1-yza
title: Vitrea subrimata (Reinhardt, 1871)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/htc-xyf-wcp
title: Oxychilus cellarius (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yvw-ja0-7vy
title: Steromphala pennanti (R. A. Philippi, 1851)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/csy-1qb-cqx
title: Cochlicella acuta (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e9k-777-6ez
title: Therasia F. W. Hutton, 1883

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/654-jg2-yv8
title: Succinea putris (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pmz-nw4-7bn
title: Paralaoma servilis (Shuttleworth, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/40s-vk5-hm1
title: Arcidae Lamarck, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lrh-xlm-thh
title: Xerocrassa cretica (L. Pfeiffer, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d0j-xg0-31m
title: Albinaria petrosa bigibbosula Westerlund, 1878

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j4l-zre-rz8
title: Zonitoides nitidus (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rp8-rab-zkn
title: Caracollina lenticula (Michaud, 1831)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/29s-03p-z0s
title: Cepaea nemoralis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6rz-kw3-bhr
title: Trochoidea pyramidata (Draparnaud, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gla-7g7-qtj
title: Eremina dillwyniana (L. Pfeiffer, 1853)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x3w-c0x-5m7
title: Vitrea crystallina (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pnk-1jc-9w5
title: Xerosecta arigonis (A. Schmidt, 1853)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aw1-yjc-jca
title: Dentalium congoense Plate, 1908

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x14-06b-98d
title: Catinella (Mediappendix) avara [auct. non Say, 1824]

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mtg-lh0-wm7
title: Scaphopoda Bronn, 1862

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zge-c5b-ga0
title: Canariella pthonera (Mabille, 1883)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fe0-t2f-3th
title: Linisa texasiana (S. Moricand, 1834)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mjm-1mf-74e
title: Paralaoma servilis (Shuttleworth, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/497-9nj-t9r
title: Janulus bifrons (R. T. Lowe, 1831)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pgz-c6y-evd
title: Stylommatophora A. Schmidt, 1855

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wb0-3ex-bks
title: Leptaxis R. T. Lowe, 1852

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/49j-s77-sqe
title: Crystallopsis Ancey, 1887

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w93-fq4-gt2
title: Cepaea nemoralis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nfa-5dk-p5x
title: Pristilomatidae T. D. A. Cockerell, 1891

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7tb-95p-lzl
title: Vitrea contracta (Westerlund, 1871)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k9s-3sw-f79
title: Papuina steursiana (Shuttleworth, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c0n-1wh-8dg
title: Vitrea contracta (Westerlund, 1871)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gk7-1t9-wn4
title: Bradybaena similaris (A. Férussac, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c50-ewj-wab
title: Vitrea subrimata (Reinhardt, 1871)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ahm-z46-qf9
title: Edentiella leucozona leucozona (C. Pfeiffer, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kfw-gpp-sqj
title: Pyrochilus pyrostoma (A. Férussac, 1821)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/161-rq9-bt5
title: Oxychilus cellarius (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/94c-hq0-brh
title: Chloraea dryope (Broderip, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.rrtjds
title: Occurrence Download

description: A dataset containing 217894 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-107.45671103826075 26.897404519891698, -107.41296768360145 28.248951197837503, -108.94042391554706 28.28053576908816, -108.96558341305922 26.927231435259323, -107.45671103826075 26.897404519891698))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Animalia)"
 ]
}

 The dataset includes 217894 records from 244 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003975-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yqru5t
title: Occurrence Download

description: A dataset containing 1855 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echis carinatus"
 ]
}

 The dataset includes 1855 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028686-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13130/rd_unimi/jmksaw/2908b9
title: base_test.py

description: :unav
DOI: 10.13130/rd_unimi/jmksaw/wfdsyr
title: raw_exp_ensemble_risk.py

description: :unav
DOI: 10.13130/rd_unimi/jmksaw/1957ba
title: top_test.py

description: :unav
DOI: 10.13130/rd_unimi/jmksaw/rmkusb
title: raw_pipe.py

description: :unav
DOI: 10.13130/rd_unimi/jmksaw/naqbth
title: raw_exp_ensemble_risk_test.py

description: :unav
DOI: 10.21233/p9p6-4288
title: New Bedford vertebrate fauna dataset

description: Raw data for the New Bedford vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/7tph-vm13
title: Saint - Flavien insect dataset

description: Raw data for the Saint - Flavien insect dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.kqgdt3
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Osteocephalus carri (Cochran & Goin, 1970)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 112 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026020-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6sm42
title: Occurrence Download

description: A dataset containing 6820 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hevea Aubl."
 ]
}

 The dataset includes 6820 records from 271 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026021-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/p3mn-mv24
title: Chief Joseph Dam Site 45DO282 vertebrate fauna dataset

description: Raw data for the Chief Joseph Dam Site 45DO282 vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/mh0m-n767
title: Near Ptichye Lake ostracode surface sample dataset

description: Raw data for the Near Ptichye Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/66j3-t441
title: Sears Pond pollen dataset

description: Raw data for the Sears Pond pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.htsh9v
title: Occurrence Download

description: A dataset containing 613 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Mongolia)",
 "TaxonKey is Aidia canthioides (Champ. ex Benth.) Masam."
 ]
}

 The dataset includes 613 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026022-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/v39y-ds38
title: Holly Ruin Group pollen dataset

description: Raw data for the Holly Ruin Group pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.7258723
title: Trypanosoma brucei bloodstream form tagging: Targeted subcellular protein localisation.

description: Trypanosoma brucei bloodstream form tagging protein localisation data. Widefield epifluorescence microscope images of protein subcellular localisation in the bloodstream form life cycle stage of the unicellular eukaryotic pathogen Trypanosoma brucei by endogenous tagging with mNeonGreen (mNG). This master deposition includes primer sequences and DOI indexing, provided in the a directory structure analogous to the TrypTag genome-wide procyclic form project: https://doi.org/10.5281/zenodo.6862298 It does not include any microscopy data, which are spread over multiple Zenodo DOIs. Instead, raw and processed data directories include an index to each DOI.
DOI: 10.5281/zenodo.7418663
title: Trypanosoma brucei bloodstream form tagging: Targeted subcellular protein localisation.

description: Trypanosoma brucei bloodstream form tagging protein localisation data. Widefield epifluorescence microscope images of protein subcellular localisation in the bloodstream form life cycle stage of the unicellular eukaryotic pathogen Trypanosoma brucei by endogenous tagging with mNeonGreen (mNG). This master deposition includes a summary of the localisations, primer sequences and DOI indexing, provided in a directory structure analogous to the TrypTag genome-wide procyclic form project: https://doi.org/10.5281/zenodo.6862298 It does not include any microscopy data, which are spread over multiple Zenodo DOIs. Instead, this deposition and the raw and processed data directories include an index to each DOI.
DOI: 10.5281/zenodo.7787141
title: Trypanosoma brucei bloodstream form tagging: Targeted subcellular protein localisation.

description: Trypanosoma brucei bloodstream form tagging protein localisation data. Widefield epifluorescence microscope images of protein subcellular localisation in the bloodstream form life cycle stage of the unicellular eukaryotic pathogen Trypanosoma brucei by endogenous tagging with mNeonGreen (mNG). This master deposition includes a summary of the localisations, primer sequences and DOI indexing, provided in a directory structure analogous to the TrypTag genome-wide procyclic form project: https://doi.org/10.5281/zenodo.6862298 It does not include any microscopy data, which are spread over multiple Zenodo DOIs. Instead, this deposition and the raw and processed data directories include an index to each DOI.
description: Convert quote-flanked tabs to comma delimination in localisations.tsv localisation columns.
DOI: 10.5281/zenodo.7843865
title: Trypanosoma brucei bloodstream form tagging: Targeted subcellular protein localisation.

description: Trypanosoma brucei bloodstream form tagging protein localisation data. Widefield epifluorescence microscope images of protein subcellular localisation in the bloodstream form life cycle stage of the unicellular eukaryotic pathogen Trypanosoma brucei by endogenous tagging with mNeonGreen (mNG). This master deposition includes a summary of the localisations, primer sequences and DOI indexing, provided in a directory structure analogous to the TrypTag genome-wide procyclic form project: https://doi.org/10.5281/zenodo.6862298 It does not include any microscopy data, which are spread over multiple Zenodo DOIs. Instead, this deposition and the raw and processed data directories include an index to each DOI. <strong>localisations.tsv</strong><br> Tab-delimited table, which can be opened in Excel, of localisation annotations for each gene tagged. Also includes primer sequences used, the 96 well plate in which tagging was carried out organised with one row per gene ID, with sets of columns for N and C terminal tagging. <strong>geneselection.tsv</strong><br> Tab-delimited table of criteria used for gene selection for tagging. This includes presence/absence of a <em>Leishmania major </em>or <em>Trypanosoma cruzi </em>ortholog, localisation and signal intensity by procyclic form tagging (TrypTag) and upregulation at mRNA level. <strong>id_doi_index.tsv</strong><br> Tab-delimited table listing all Trypanosoma brucei Lister 427 gene IDs, if tagging was attempted at the N or C terminus and, if so, the Zenodo DOI at which to find the microscopy data. To download data for a particular gene ID, find its entry in this table, go to the corresponding Zenodo DOI and download &lt;plateid_date&gt;.zip for the raw microscopy data or &lt;plateid_date&gt;_processed.zip for the processed microscopy data. In the latter, images are named by gene ID and tagged terminus. <strong>plate_doi_index.tsv</strong><br> Tab-delimited table listing all 96 plates which were part of the targeted bloodstream form tagging project and the Zenodo DOI at which the data can be found. Downloading the data from all of these Zenodo DOIs gives the full microscopy dataset. <strong>trypTag_BSF_master.zip</strong><br> Zip file containing the master directory structure for the targeted bloodstream form tagging project database. This contains all internal code which was used to build the bloodstream form tagging database from the raw microscopy data. <strong>readme.docx</strong><br> Documentation on data access and rebuilding the database using trypTag_BSF_master.zip
DOI: 10.5281/zenodo.15387020
title: Trypanosoma brucei bloodstream form tagging: Targeted subcellular protein localisation.

description: Trypanosoma brucei bloodstream form tagging protein localisation data. Widefield epifluorescence microscope images of protein subcellular localisation in the bloodstream form life cycle stage of the unicellular eukaryotic pathogen Trypanosoma brucei by endogenous tagging with mNeonGreen (mNG). This master deposition includes a summary of the localisations, primer sequences and DOI indexing, provided in a directory structure analogous to the TrypTag genome-wide procyclic form project: https://doi.org/10.5281/zenodo.6862298 It does not include any microscopy data, which are spread over multiple Zenodo DOIs. Instead, this deposition and the raw and processed data directories include an index to each DOI.


localisations.tsv
Tab-delimited table, which can be opened in Excel, of localisation annotations for each gene tagged. Also includes primer sequences used, the 96 well plate in which tagging was carried out organised with one row per gene ID, with sets of columns for N and C terminal tagging.


geneselection.tsv
Tab-delimited table of criteria used for gene selection for tagging. This includes presence/absence of a Leishmania major or Trypanosoma cruzi ortholog, localisation and signal intensity by procyclic form tagging (TrypTag) and upregulation at mRNA level.


id_doi_index.tsv
Tab-delimited table listing all Trypanosoma brucei Lister 427 gene IDs, if tagging was attempted at the N or C terminus and, if so, the Zenodo DOI at which to find the microscopy data. To download data for a particular gene ID, find its entry in this table, go to the corresponding Zenodo DOI and download <plateid_date>.zip for the raw microscopy data or <plateid_date>_processed.zip for the processed microscopy data. In the latter, images are named by gene ID and tagged terminus.


plate_doi_index.tsv
Tab-delimited table listing all 96 plates which were part of the targeted bloodstream form tagging project and the Zenodo DOI at which the data can be found. Downloading the data from all of these Zenodo DOIs gives the full microscopy dataset.


trypTag_BSF_master.zip
Zip file containing the master directory structure for the targeted bloodstream form tagging project database. This contains all internal code which was used to build the bloodstream form tagging database from the raw microscopy data.


readme.docx
Documentation on data access and rebuilding the database using trypTag_BSF_master.zip
DOI: 10.5281/zenodo.7258722
title: Trypanosoma brucei bloodstream form tagging: Targeted subcellular protein localisation.

description: Trypanosoma brucei bloodstream form tagging protein localisation data. Widefield epifluorescence microscope images of protein subcellular localisation in the bloodstream form life cycle stage of the unicellular eukaryotic pathogen Trypanosoma brucei by endogenous tagging with mNeonGreen (mNG). This master deposition includes a summary of the localisations, primer sequences and DOI indexing, provided in a directory structure analogous to the TrypTag genome-wide procyclic form project: https://doi.org/10.5281/zenodo.6862298 It does not include any microscopy data, which are spread over multiple Zenodo DOIs. Instead, this deposition and the raw and processed data directories include an index to each DOI.


localisations.tsv
Tab-delimited table, which can be opened in Excel, of localisation annotations for each gene tagged. Also includes primer sequences used, the 96 well plate in which tagging was carried out organised with one row per gene ID, with sets of columns for N and C terminal tagging.


geneselection.tsv
Tab-delimited table of criteria used for gene selection for tagging. This includes presence/absence of a Leishmania major or Trypanosoma cruzi ortholog, localisation and signal intensity by procyclic form tagging (TrypTag) and upregulation at mRNA level.


id_doi_index.tsv
Tab-delimited table listing all Trypanosoma brucei Lister 427 gene IDs, if tagging was attempted at the N or C terminus and, if so, the Zenodo DOI at which to find the microscopy data. To download data for a particular gene ID, find its entry in this table, go to the corresponding Zenodo DOI and download <plateid_date>.zip for the raw microscopy data or <plateid_date>_processed.zip for the processed microscopy data. In the latter, images are named by gene ID and tagged terminus.


plate_doi_index.tsv
Tab-delimited table listing all 96 plates which were part of the targeted bloodstream form tagging project and the Zenodo DOI at which the data can be found. Downloading the data from all of these Zenodo DOIs gives the full microscopy dataset.


trypTag_BSF_master.zip
Zip file containing the master directory structure for the targeted bloodstream form tagging project database. This contains all internal code which was used to build the bloodstream form tagging database from the raw microscopy data.


readme.docx
Documentation on data access and rebuilding the database using trypTag_BSF_master.zip