cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/ppzmc-vh583
title: Caulobacter crescentus

description: Raw data files of Caulobacter crescentus
description: <strong>Tilt Series Date:</strong> 2018-09-11</p>
<strong>Data Taken By:</strong> Lujia Zhang</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> For the research of pilus, WT</p>
<strong>Purification / Growth Conditions / Treatment:</strong> swarmer cell, PVP</p>
<strong>Sample Preparation:</strong> force 4, time 6, humidity 100%, temp. 22</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-09-11-5/rawdata/</p>targ21.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-09-11-5/rawdata/targ21.mrc"
        > <i class="download icon"></i> Download </a></p>

        targ21_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-09-11-5/3dimage_100295/targ21_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fyr5s-1fm81
title: P. gingivalis wild type

description: Raw data files of P. gingivalis wild type
description: <strong>Tilt Series Date:</strong> 2020-11-06</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Reynolds</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown and harvested from plates</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-335/rawdata/</p>PginWT9_334.mrc,  Tilt Series (Pixel Size 0.333 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-335/rawdata/PginWT9_334.mrc"
        > <i class="download icon"></i> Download </a></p>

        PginWT9_334_full.rec,  Reconstruction (Pixel Size 1.332 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-335/3dimage_115629/PginWT9_334_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6dfee-n5n23
title: Dual-labeled VSVG-HIV

description: Raw data files of Dual-labeled VSVG-HIV
description: <strong>Tilt Series Date:</strong> 2019-02-01</p>
<strong>Data Taken By:</strong> Steven Wang</p>
<strong>Species / Specimen:</strong> HIV cores</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> iMOD</p>
<strong>Collaborators and Roles:</strong> Thomas J. Hope</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 37 degrees celsius</p>
<strong>Sample Preparation:</strong> plunge-freezing</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/swy2019-02-01-3/rawdata/</p>V3near.mrc,  Tilt Series (Pixel Size 0.351 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/swy2019-02-01-3/rawdata/V3near.mrc"
        > <i class="download icon"></i> Download </a></p>

        V3near_full.rec,  Reconstruction (Pixel Size 1.404 nm), 267.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/swy2019-02-01-3/3dimage_101310/V3near_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3whss-y8656
title: Campylobacter jejuni

description: Session notes: Auto-reconstruct 0.28, 0.025; auto-erase golds; SIRT reconstruction Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-04-22</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-04-22-6_slicer5687.jpg: Chemoreceptors mba2012-04-22-6_slicer5688.jpg: Pilli mba2012-04-22-6_slicer5689.jpg: REZ mba2012-04-22-6_slicer5690.jpg: Granule
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-22-6/rawdata/</p>12apr22a_cjj0276_0008.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-22-6/rawdata/12apr22a_cjj0276_0008.st"
        > <i class="download icon"></i> Download </a></p>

        12apr22a_cjj0276_0008.rec,  Reconstruction (Pixel Size 1.56 nm), 208.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-22-6/3dimage_22927/12apr22a_cjj0276_0008.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/krh81-wff03
title: Salmonella typhimurium

description: Session notes: FliL deletion (plus T3SS) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-11-23</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: -1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2011-11-23-24_slicer8513.jpg: Unknown filament .  Salmonella enterica mba2011-11-23-24_slicer8515.jpg: Salmonella enterica  .  Unknown
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-11-23-24/rawdata/</p>11nov23a_fliL_0024.st,  Tilt Series (Pixel Size 0.512 nm), 726.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-11-23-24/rawdata/11nov23a_fliL_0024.st"
        > <i class="download icon"></i> Download </a></p>

        11nov23a_fliL_0024.rec,  Reconstruction (Pixel Size 1.036 nm), 412.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-11-23-24/3dimage_22171/11nov23a_fliL_0024.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/wrnj2-rkx32
title: Alongum

description: Alongum_lysozyme
description: <strong>Tilt Series Date:</strong> 2012-05-20</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> WesleyChen helped remove layers</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-101/rawdata/</p>ecolilys20002.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-101/rawdata/ecolilys20002.mrc"
        > <i class="download icon"></i> Download </a></p>

        ecolilys20002_full.rec,  Reconstruction (Pixel Size 1.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-101/3dimage_56919/ecolilys20002_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/f4sav-w1388
title: Alongum

description: Alongum_lysozyme
description: <strong>Tilt Series Date:</strong> 2012-05-20</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> WesleyChen helped remove layers</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-100/rawdata/</p>ecolilys20001.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-100/rawdata/ecolilys20001.mrc"
        > <i class="download icon"></i> Download </a></p>

        ecolilys20001_full.rec,  Reconstruction (Pixel Size 1.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-100/3dimage_56917/ecolilys20001_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ck2pt-5r690
title: Campylobacter jejuni

description: Session notes: Auto-reconstruct 0.28, 0.025; auto-erase golds; SIRT reconstruction Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-04-22</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-04-22-7_slicer5694.jpg: Unknown granule mba2012-04-22-7_slicer5696.jpg: Pilli mba2012-04-22-7_slicer5697.jpg: Chemoreceptors
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-22-7/rawdata/</p>12apr22a_cjj0276_0012.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-22-7/rawdata/12apr22a_cjj0276_0012.st"
        > <i class="download icon"></i> Download </a></p>

        12apr22a_cjj0276_0012.rec,  Reconstruction (Pixel Size 1.56 nm), 231.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-22-7/3dimage_22929/12apr22a_cjj0276_0012.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/31gt1-pn311
title: Alongum

description: Alongum_protK
description: <strong>Tilt Series Date:</strong> 2012-05-20</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> WesleyChen helped remove layers</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-136/rawdata/</p>ecoliProtK0016.mrc,  Tilt Series (Pixel Size 0.95 nm), 842.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-136/rawdata/ecoliProtK0016.mrc"
        > <i class="download icon"></i> Download </a></p>

        ecoliProtK0016_part102_8.rec,  Reconstruction (Pixel Size 1.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-136/3dimage_56989/ecoliProtK0016_part102_8.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/t302z-ecc05
title: T9_wt

description: This was a wt sample prepared with Paul when he was visiting
description: <strong>Tilt Series Date:</strong> 2016-04-30</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Paul Veith and Eric Reynolds</p>
<strong>Purification / Growth Conditions / Treatment:</strong> See pages 84-86</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2016-04-30-26/rawdata/</p>atlas10022.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2016-04-30-26/rawdata/atlas10022.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas10022_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2016-04-30-26/3dimage_74558/atlas10022_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cc02t-k0118
title: H. pylori 26695 WT

description: grid box YWC259
description: <strong>Tilt Series Date:</strong> 2017-07-06</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Helicobacter pylori</p>
<strong>Strain:</strong> 26695</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain and sample prepared by Carrie Shaffer</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-07-06-111/rawdata/</p>20170706_YWC259_10113.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-07-06-111/rawdata/20170706_YWC259_10113.mrc"
        > <i class="download icon"></i> Download </a></p>

        20170706_YWC259_10113.rec,  Reconstruction (Pixel Size 1.56 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-07-06-111/3dimage_85866/20170706_YWC259_10113.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.kap8kk
title: Occurrence Download

description: A dataset containing 1485 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "GadmGid is USA.37.48_1",
 "TaxonKey is one of (Crocodylia, Testudines, Squamata)"
 ]
}

 The dataset includes 1485 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001942-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/n7z81-vyp52
title: Azospirillum Delta Operon 4

description: Raw data files of Azospirillum Delta Operon 4
description: <strong>Tilt Series Date:</strong> 2015-04-30</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Azospirillum brasilense</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: 8.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Gladys Alexandre</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-04-30-31/rawdata/</p>deltaOp4april0019.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-04-30-31/rawdata/deltaOp4april0019.mrc"
        > <i class="download icon"></i> Download </a></p>

        deltaOp4april0019_part121_2.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-04-30-31/3dimage_55260/deltaOp4april0019_part121_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.aywz5r
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Michelia chapensis"
 ]
}

 The dataset includes 218 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001939-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/cyyez-98k44
title: H. pylori 26695 WT

description: grid box YWC259
description: <strong>Tilt Series Date:</strong> 2017-07-06</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Helicobacter pylori</p>
<strong>Strain:</strong> 26695</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain and sample prepared by Carrie Shaffer</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-07-06-83/rawdata/</p>20170706_YWC259_10084.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-07-06-83/rawdata/20170706_YWC259_10084.mrc"
        > <i class="download icon"></i> Download </a></p>

        20170706_YWC259_10084.rec,  Reconstruction (Pixel Size 1.56 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2017-07-06-83/3dimage_85812/20170706_YWC259_10084.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.q8vdr7
title: Occurrence Download

description: A dataset containing 282 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "GadmGid is USA.37.47_1",
 "TaxonKey is one of (Crocodylia, Testudines, Squamata)"
 ]
}

 The dataset includes 282 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001941-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/g6k66x
title: MLZ Fish Collection (Arctos)

description: The Vantuna Research Group’s (VRG) fish collection, now integrated into the Moore Laboratory of Zoology collection, is located at Occidental College in Los Angeles, California. The fish collection totals nearly 600,000 specimens and includes whole organisms (&gt;20,000), larvae (&gt;550,000), tissue samples (6,236), otoliths (19,458), gonads (676), and vertebrae (126). The collection was established by Dr. John S. Stephens in 1960. Stephens and his mentee, Dr. Dan Pondella, the current VRG Director, worked together on rocky-reef fishes of the eastern Pacific. Stephens described the family of Chaenopsidae and Pondella specialized in phylogenetic systematics of bass and groupers. The vast majority of the collection’s specimens are from the Southern California Bight and together encompass the full spatial extent of the southern California rocky reef ecosystem. Taxonomic strengths of the collection, excluding larvae specimens, include Sciaenidae (13,765), Atherinopsidae (3,199), Sebastidae (1,740), Embiotocidae (1,628), and Serranidae (837). Most of the larvae specimens were collected as part of an ongoing study and represent over 45 years of monthly collections—this is one of the largest and longest time-series collections of nearshore fish larvae in the region. Taxonomic strengths of this larvae collection include Gobiidae (166,507), Blenniidae (130,666), Pomacentridae (83,558), and Labrisomidae (52,767).