DOI: 10.5281/zenodo.14231104
title: Occurrences records of Herichthys labridens (Cichliformes: Cichlidae), with associated habitat information, in the Media Luna spring, San Luis Potosí, Mexico

description: Introduction



Occurrence records of the endemic cichlid Herichthys labridens, by adult and juvenile life stages, during three summer events (years of 1999, 2009, and 2019), in the Media Luna spring, San Luis Potosí Mexico. 


Material and Methods 



The occurrence records, ordered by adult and juvenile life stages, were obtained from two sources. For the summer of 1999, data were downloaded from the literature (Palacio-Núñez et al., 2010). For subsequent events, we recorded new data from 66 underwater transects distributed among 14 sectors (S1 to S14) in the Media Luna spring. We followed the method of Palacio-Núñez (2007), which maintained the transect location and sector boundaries of the summer of 1999 (Fig. 1a). The 20 m² transects were placed transversely to the current, from the edge to the central part of the canal (Fig. 1b). This sampling design was selected to meet two basic assumptions for studies of spatial distribution and habitat suitability: (1) the observations within the area are true and, (2) these observations delimit the initial position of the recorded individuals (Buckland & Elston, 1993). The analysis of the spatial information of the sectors, the underwater transects, and the delimitation of the water surface was performed using the QGIS® software version 3.4.8 (Menke, 2019).

 

Figure 1. Sector boundary_Transect location and sampling_Media Luna spring.jpeg. (a) Location of the transects in the Media Luna spring, Mexico. (b) Design scheme of the sampling transect; a CPVC pipe was used to give width to the edges of the transect and a nylon rope was attached to each side of the pipes to demarcate the length of the transect. Floating rubber buoys were added to the transects (at the edge towards the center of the canal) to prevent them from sinking into the sediment and to locate them among the vegetation. Transect scheme: Jorge Palacio-Núñez.

In the summer events where we worked in field, we recorded the spatial location (i.e., GPS coordinates) of each individual and its life stage by direct observation with snorkel equipment and using a Garmin etrex device. The recorded  information  included the data of water depth and related underwater coverage. It is important to mention that, to prevent a repeat observation of the same organism or to ommit any individual, the transect was swaped slowly and in one direction only (i.e., from the center of the canal to the shore). We also used underwater cameras to validate the information. In adittion, the characterization of H. labridens individuals by life stage was performed by approximate size. For this purpose, previous studies on the life history and biology of the species were reviewed (Miller et al., 2005; De La Maza-Benignos & Lozano-Vilano, 2013). It is worth mentioning that, during fieldwork, we avoided manipulation, damage, or unnecessary capture of the fish (e.g., Prchalová et al., 2009).

The databases by life stage were organized for each summer event, where, each observation record was included along with the associated habitat conditions. Subsequently, we depurated each database to remove atypical spatial data, data without information, incomplete data, or data with duplicate coordinates (García-Roselló et al., 2014). Then, we performed spatial filtering of the remaining records to validate those that were within the study area, and to prevent that two or more points were within 0.1 m of each other. These steps of our analysis were performed using the software Qgis® version 3.28.4 and Rstudio® (Rstudio team, 2020). Subsequently, with the data set that included fish records, water depth, and underwater coverage variables, we performed a final environmental filter to rule out atypical records. This exploration was performed in Rstudio ® using the outliers function, starting from the lowest and highest quantiles.


Results



The final filtered databases were organized by life stage and summer event:

Adult: 




Summer event
Database


1999
Occurrences_records_H_labridens_Adult_1999_Palacio-Núñez et al., 2010.csv


2009
Occurrences_records_H_labridens_Adult_2009_Field work.csv


2019
Occurrences_records_H_labridens_Adult_2019_Field work.csv




 Juvenile:




Summer event
Database


1999
Occurrences_records_H_labridens_Juvenile_1999_Palacio-Núñez et al., 2010.csv


2009
Occurrences_records_H_labridens_Juvenile_2009_Field work.csv


2019
Occurrences_records_H_labridens_Juvenile_2019_Field work.csv





 



These occurrence records for H. labridens are ready to be used in ecological niche modeling and spatial distribution studies. Also, these records can be used for other ecological and spatial studies, because each record (i.e., individual) included geoespatial coordinates, sector, location, and transect number. Also, we recorded information about the conditions of underwater coverage and water depth, which were asociated to each ocurrence record.

For more information about several R codes where the previous databases can be used, visit the following repository URL: https://doi.org/10.5281/zenodo.7603557.

Also, to download the UC and WDp variables to run the spatial and ecological modeling, visit the following repository URL: https://doi.org/10.5281/zenodo.7603890.