cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2587758
title: Supplementary data for "Molecular-scale thermally activated fractures in methane hydrates: A molecular dynamics study"

description: In this dataset you can find

- a data sample that can be used to confirm the plots in the paper. This can be found in the folder "data_sample". Each folder inside "data_sample" is one simulation. It contains the thermodynamic output from the simulation (log.lammps), and the input script (mw_hydrate_pennycrack.in) and input data (s1_unit_cell_mw.data and water_methane_hydrate.sw) that enables rerunning the simulation using LAMMPS.

- A custom LAMMPS region, region_ellipsoid. This has to be compiled into LAMMPS in order to create the systems that we simulate.

- A python script, plot_data.py, that shows how to extract the relevant data from the lammps log files, which enables the partial reproduction of figure 3 in the paper. See instructions below for requirements to use this script.

 

"region_ellipsoid" and "data_sample" are in zip containers. In order to use them, please unzip them and leave the resulting folders in the same directory as this README file.

 

Installation instructions to make "plot_data.py" work (assuming you already have numpy and matplotlib):

&gt; pip3 install git+https://github.com/henriasv/regex-file-collector.git

&gt; pip3 install git+https://github.com/henriasv/lammps-logfile.git

 

If this does not work, please contact Henrik Andersen Sveinsson, henriasv@fys.uio.no
description: {"references": ["Henrik Andersen Sveinsson and Anders Malthe-s\u00f8renssen. Molecular- scale thermally activated fractures in methane hydrates : a molecular dynamics study. Physical Chemistry Chemical Physics (2019"]}
DOI: 10.5281/zenodo.2587759
title: Supplementary data for "Molecular-scale thermally activated fractures in methane hydrates: A molecular dynamics study"

description: In this dataset you can find

- a data sample that can be used to confirm the plots in the paper. This can be found in the folder "data_sample". Each folder inside "data_sample" is one simulation. It contains the thermodynamic output from the simulation (log.lammps), and the input script (mw_hydrate_pennycrack.in) and input data (s1_unit_cell_mw.data and water_methane_hydrate.sw) that enables rerunning the simulation using LAMMPS.

- A custom LAMMPS region, region_ellipsoid. This has to be compiled into LAMMPS in order to create the systems that we simulate.

- A python script, plot_data.py, that shows how to extract the relevant data from the lammps log files, which enables the partial reproduction of figure 3 in the paper. See instructions below for requirements to use this script.

 

"region_ellipsoid" and "data_sample" are in zip containers. In order to use them, please unzip them and leave the resulting folders in the same directory as this README file.

 

Installation instructions to make "plot_data.py" work (assuming you already have numpy and matplotlib):

&gt; pip3 install git+https://github.com/henriasv/regex-file-collector.git

&gt; pip3 install git+https://github.com/henriasv/lammps-logfile.git

 

If this does not work, please contact Henrik Andersen Sveinsson, henriasv@fys.uio.no
DOI: 10.5066/p9bvaurt
title: Data release for the potential role of very high-resolution imagery to characterise lake, wetland and stream systems across the Prairie Pothole Region, United States

description: Aquatic features critical to watershed hydrology range widely in size from narrow, shallow streams to large, deep lakes. In this study we evaluated wetland, lake, and river systems across the Prairie Pothole Region to explore where pan-sharpened high-resolution (PSHR) imagery, relative to Landsat imagery, could provide additional data on surface water distribution and movement, missed by Landsat. We used the monthly Global Surface Water (GSW) Landsat product as well as surface water derived from Landsat imagery using a matched filtering algorithm (MF Landsat) to help consider how including partially inundated Landsat pixels as water influenced our findings. The PSHR outputs (and MF Landsat) were able to identify ~60-90% more surface water interactions between waterbodies, relative to the GSW Landsat product. However, regardless of Landsat source, by documenting many smaller (&lt;0.2 ha), inundated wetlands, the PSHR outputs modified our interpretation of wetland size distribution across the Prairie Pothole Region.
DOI: 10.5281/zenodo.2588331
title: Modular organization of the murine locomotor pattern in the presence and absence of sensory feedback from muscle spindles

description: In this study, we made use of non-negative matrix factorization (NMF) to extract muscle synergies from electromyographic (EMG) data. We implemented the NMF algorithm in R version 3.5.1 (R Foundation for Statistical Computing, R Core Team, Vienna, Austria), a programming language available in a free software environment. However, even if the software does not require a paid license, often researchers are either not confident with or prefer not to spend time writing the code required to perform NMF. We make available, as we recently did with human data (Santuz <em>et al.</em>, 2018), an example open access data set of EMG and muscle synergy data for murine walking and swimming. The data presented in this supplementary information part is available in three formats: 1) the raw EMG of two example trials (one recorded during walking and the other during swimming in a wild type animal, six muscles), unprocessed together with the touchdown and lift-off timings of the recorded limb for walking and the cycle timings for swimming; 2) the filtered and time-normalized EMG and 3) the muscle synergies extracted via NMF. Moreover, we provide the R code for obtaining the results described in the previous three points. We do not report any metadata, since trials are relative to a single representative animal. The R code is profusely commented.
description: This version contains a correction to the R function for the extraction of muscle synergies. Thanks to Dimitris Patikas for the hint!
DOI: 10.5281/zenodo.2588332
title: Modular organization of the murine locomotor pattern in the presence and absence of sensory feedback from muscle spindles

description: In this study, we made use of non-negative matrix factorization (NMF) to extract muscle synergies from electromyographic (EMG) data. We implemented the NMF algorithm in R version 3.5.1 (R Foundation for Statistical Computing, R Core Team, Vienna, Austria), a programming language available in a free software environment. However, even if the software does not require a paid license, often researchers are either not confident with or prefer not to spend time writing the code required to perform NMF. We make available, as we recently did with human data (Santuz <em>et al.</em>, 2018), an example open access data set of EMG and muscle synergy data for murine walking and swimming. The data presented in this supplementary information part is available in three formats: 1) the raw EMG of two example trials (one recorded during walking and the other during swimming in a wild type animal, six muscles), unprocessed together with the touchdown and lift-off timings of the recorded limb for walking and the cycle timings for swimming; 2) the filtered and time-normalized EMG and 3) the muscle synergies extracted via NMF. Moreover, we provide the R code for obtaining the results described in the previous three points. We do not report any metadata, since trials are relative to a single representative animal. The R code is profusely commented.
DOI: 10.17632/398zbh4bmp.2
title: Data for: Ductility demand of bilinear hysteretic system with large post-yield stiffness: Spectral model and application in the seismic design of dual-systems

description: 1. Supplementary Material 1 _ Earthquake Record Database; 2. Supplementary Material 2 _ Selected Earthquake Record; 3. Supplementary Material 3 _ Coefficients in Eq.(2) and Eq.(3)
DOI: 10.18119/n9t01m
title: Network of proteins modulated by arsenicals and implicated in kidney, bladder and prostate cancer
DOI: 10.5517/ccdc.csd.cc21c1s8
title: CCDC 1887459: Experimental Crystal Structure Determination

description: Related Article: Li-Li Ma, Yuan-Yuan An, Li-Ying Sun, Yao-Yu Wang, F. Ekkehardt Hahn, Ying-Feng Han|2019|Angew.Chem.,Int.Ed.|58|3986|doi:10.1002/anie.201900221
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21tx2w
title: CCDC 1901728: Experimental Crystal Structure Determination

description: Related Article: Hairong Lyu,  Jie Zhang,  Jingting Yang,  Yangjian Quan,  Zuowei Xie|2019|J.Am.Chem.Soc.|141|4219|doi:10.1021/jacs.9b00302
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21tx3x
title: CCDC 1901729: Experimental Crystal Structure Determination

description: Related Article: Hairong Lyu,  Jie Zhang,  Jingting Yang,  Yangjian Quan,  Zuowei Xie|2019|J.Am.Chem.Soc.|141|4219|doi:10.1021/jacs.9b00302
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21tx60
title: CCDC 1901732: Experimental Crystal Structure Determination

description: Related Article: Hairong Lyu,  Jie Zhang,  Jingting Yang,  Yangjian Quan,  Zuowei Xie|2019|J.Am.Chem.Soc.|141|4219|doi:10.1021/jacs.9b00302
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21tyzt
title: CCDC 1901787: Experimental Crystal Structure Determination

description: Related Article: Frank R. Fronczek|2019|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21tz73
title: CCDC 1901795: Experimental Crystal Structure Determination

description: Related Article: Frank R. Fronczek|2019|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21tzkf
title: CCDC 1901805: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold and Russell P. Hughes|2019|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21v2vv
title: CCDC 1901907: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold|2019|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10507754
title: Linked collectors and determiners for: An earlier name for Lindernia andringitrae Eb. Fischer (Linderniaceae).

description: Natural history specimen data linked to collectors and determiners held within, "An earlier name for Lindernia andringitrae Eb. Fischer (Linderniaceae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/c6575603-1f56-431c-8d9f-5b71e1ad9ae2 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/c6575603-1f56-431c-8d9f-5b71e1ad9ae2. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10596310
title: Linked collectors and determiners for: An earlier name for Lindernia andringitrae Eb. Fischer (Linderniaceae).

description: Natural history specimen data linked to collectors and determiners held within, "An earlier name for Lindernia andringitrae Eb. Fischer (Linderniaceae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/c6575603-1f56-431c-8d9f-5b71e1ad9ae2 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/c6575603-1f56-431c-8d9f-5b71e1ad9ae2. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10507757
title: Linked collectors and determiners for: Notes on the Nebria subgenus Epinebriola K. DANIEL, 1904 with the description of Barbonebriola subgen. nov. and 13 new species from the Himalaya-Tibet orogen (Coleoptera, Carabidae, Nebriini).

description: Natural history specimen data linked to collectors and determiners held within, "Notes on the Nebria subgenus Epinebriola K. DANIEL, 1904 with the description of Barbonebriola subgen. nov. and 13 new species from the Himalaya-Tibet orogen (Coleoptera, Carabidae, Nebriini)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/ce0756e2-5184-4b74-8472-ab69fed7951c using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/ce0756e2-5184-4b74-8472-ab69fed7951c. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10507758
title: Linked collectors and determiners for: Notes on the Nebria subgenus Epinebriola K. DANIEL, 1904 with the description of Barbonebriola subgen. nov. and 13 new species from the Himalaya-Tibet orogen (Coleoptera, Carabidae, Nebriini).

description: Natural history specimen data linked to collectors and determiners held within, "Notes on the Nebria subgenus Epinebriola K. DANIEL, 1904 with the description of Barbonebriola subgen. nov. and 13 new species from the Himalaya-Tibet orogen (Coleoptera, Carabidae, Nebriini)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/ce0756e2-5184-4b74-8472-ab69fed7951c using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/ce0756e2-5184-4b74-8472-ab69fed7951c. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10596312
title: Linked collectors and determiners for: Notes on the Nebria subgenus Epinebriola K. DANIEL, 1904 with the description of Barbonebriola subgen. nov. and 13 new species from the Himalaya-Tibet orogen (Coleoptera, Carabidae, Nebriini).

description: Natural history specimen data linked to collectors and determiners held within, "Notes on the Nebria subgenus Epinebriola K. DANIEL, 1904 with the description of Barbonebriola subgen. nov. and 13 new species from the Himalaya-Tibet orogen (Coleoptera, Carabidae, Nebriini)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/ce0756e2-5184-4b74-8472-ab69fed7951c using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/ce0756e2-5184-4b74-8472-ab69fed7951c. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10596318
title: Linked collectors and determiners for: New species and records of Elachistinae (Lepidoptera: Gelechioidea, Elachistidae) from Nepal.

description: Natural history specimen data linked to collectors and determiners held within, "New species and records of Elachistinae (Lepidoptera: Gelechioidea, Elachistidae) from Nepal". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/d6ca332b-c8bf-4d6e-81da-6f2a3d121f24 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/d6ca332b-c8bf-4d6e-81da-6f2a3d121f24. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10507766
title: Linked collectors and determiners for: New species and records of Elachistinae (Lepidoptera: Gelechioidea, Elachistidae) from Nepal.

description: Natural history specimen data linked to collectors and determiners held within, "New species and records of Elachistinae (Lepidoptera: Gelechioidea, Elachistidae) from Nepal". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/d6ca332b-c8bf-4d6e-81da-6f2a3d121f24 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/d6ca332b-c8bf-4d6e-81da-6f2a3d121f24. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10507767
title: Linked collectors and determiners for: New species and records of Elachistinae (Lepidoptera: Gelechioidea, Elachistidae) from Nepal.

description: Natural history specimen data linked to collectors and determiners held within, "New species and records of Elachistinae (Lepidoptera: Gelechioidea, Elachistidae) from Nepal". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/d6ca332b-c8bf-4d6e-81da-6f2a3d121f24 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/d6ca332b-c8bf-4d6e-81da-6f2a3d121f24. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10507768
title: Linked collectors and determiners for: Four new species of Sabicea (Rubiaceae) from tropical Africa, with additional notes on the genus.

description: Natural history specimen data linked to collectors and determiners held within, "Four new species of Sabicea (Rubiaceae) from tropical Africa, with additional notes on the genus". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/d72802bd-d8bc-4fae-9c80-9ce6efa1c6fd using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/d72802bd-d8bc-4fae-9c80-9ce6efa1c6fd. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10507769
title: Linked collectors and determiners for: Four new species of Sabicea (Rubiaceae) from tropical Africa, with additional notes on the genus.

description: Natural history specimen data linked to collectors and determiners held within, "Four new species of Sabicea (Rubiaceae) from tropical Africa, with additional notes on the genus". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/d72802bd-d8bc-4fae-9c80-9ce6efa1c6fd using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/d72802bd-d8bc-4fae-9c80-9ce6efa1c6fd. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10596319
title: Linked collectors and determiners for: Four new species of Sabicea (Rubiaceae) from tropical Africa, with additional notes on the genus.

description: Natural history specimen data linked to collectors and determiners held within, "Four new species of Sabicea (Rubiaceae) from tropical Africa, with additional notes on the genus". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/d72802bd-d8bc-4fae-9c80-9ce6efa1c6fd using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/d72802bd-d8bc-4fae-9c80-9ce6efa1c6fd. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10507770
title: Linked collectors and determiners for: The discovery and naming of Papaver orientale s. l. (Papaveraceae) with notes on its nomenclature and early cultivation.

description: Natural history specimen data linked to collectors and determiners held within, "The discovery and naming of Papaver orientale s. l. (Papaveraceae) with notes on its nomenclature and early cultivation". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/e83c91ed-57b4-4e3f-85ea-aae67f3748cf using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/e83c91ed-57b4-4e3f-85ea-aae67f3748cf. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10507771
title: Linked collectors and determiners for: The discovery and naming of Papaver orientale s. l. (Papaveraceae) with notes on its nomenclature and early cultivation.

description: Natural history specimen data linked to collectors and determiners held within, "The discovery and naming of Papaver orientale s. l. (Papaveraceae) with notes on its nomenclature and early cultivation". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/e83c91ed-57b4-4e3f-85ea-aae67f3748cf using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/e83c91ed-57b4-4e3f-85ea-aae67f3748cf. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10596320
title: Linked collectors and determiners for: The discovery and naming of Papaver orientale s. l. (Papaveraceae) with notes on its nomenclature and early cultivation.

description: Natural history specimen data linked to collectors and determiners held within, "The discovery and naming of Papaver orientale s. l. (Papaveraceae) with notes on its nomenclature and early cultivation". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/e83c91ed-57b4-4e3f-85ea-aae67f3748cf using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/e83c91ed-57b4-4e3f-85ea-aae67f3748cf. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10575929
title: Grass evolutionary lineages can be identified using hyperspectral leaf reflectance
DOI: 10.5281/zenodo.10575930
title: Grass evolutionary lineages can be identified using hyperspectral leaf reflectance
DOI: 10.5281/zenodo.10507790
title: Linked collectors and determiners for: Analysis of male Leptagrion Selys, 1876 sensu lato (Odonata: Coenagrionidae) with description of four new genera and a new species.

description: Natural history specimen data linked to collectors and determiners held within, "Analysis of male Leptagrion Selys, 1876 sensu lato (Odonata: Coenagrionidae) with description of four new genera and a new species". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/16f0d04d-e6ef-4eba-8bb3-9c5ebd3f778f using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/16f0d04d-e6ef-4eba-8bb3-9c5ebd3f778f. Formatted as a Frictionless Data package.