cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6999701
title: Additional file 4: of Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection

description: Table S4. Bioprocesses and pathways upregulated in Nosema-infected bees under rich diet. Upregulated bioprocesses (GO-terms) and Kegg pathways in Nosema-infected bees under pollen (PN &gt; CN), Bee-Pro (BN &gt; CN) and MegaBee (MN &gt; CN) feeding compared to carbohydrates-only diet. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.6999701.v1
title: Additional file 4: of Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection

description: Table S4. Bioprocesses and pathways upregulated in Nosema-infected bees under rich diet. Upregulated bioprocesses (GO-terms) and Kegg pathways in Nosema-infected bees under pollen (PN &gt; CN), Bee-Pro (BN &gt; CN) and MegaBee (MN &gt; CN) feeding compared to carbohydrates-only diet. (XLSX 36 kb)
DOI: 10.7284/111148
title: Multiplexed data collected during research cruise HRS1309 using a Delaware SMS instrument system onboard the platform RV Hugh R. Sharp
DOI: 10.6084/m9.figshare.6999689
title: Additional file 3: of Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection

description: Table S3. Bioprocesses and pathways upregulated in healthy bees under poor diet. Upregulated bioprocesses (GO-terms) in healthy bees under poor diet feeding (carbohydrates-only) compared to pollen (C &gt; P) and Bee-Pro (C &gt; B). (XLSX 48 kb)
DOI: 10.6084/m9.figshare.6999689.v1
title: Additional file 3: of Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection

description: Table S3. Bioprocesses and pathways upregulated in healthy bees under poor diet. Upregulated bioprocesses (GO-terms) in healthy bees under poor diet feeding (carbohydrates-only) compared to pollen (C &gt; P) and Bee-Pro (C &gt; B). (XLSX 48 kb)
DOI: 10.6084/m9.figshare.6999680
title: Additional file 2: of Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection

description: Table S2. Bioprocesses and pathways upregulated in healthy bees under rich diet. Upregulated bioprocesses (GO-terms) and Kegg pathways in healthy bees under pollen (P &gt; C), Bee-Pro (B &gt; C) and MegaBee (M &gt; C) feeding compared to carbohydrates-only diet. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.6999680.v1
title: Additional file 2: of Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection

description: Table S2. Bioprocesses and pathways upregulated in healthy bees under rich diet. Upregulated bioprocesses (GO-terms) and Kegg pathways in healthy bees under pollen (P &gt; C), Bee-Pro (B &gt; C) and MegaBee (M &gt; C) feeding compared to carbohydrates-only diet. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.6999665
title: Additional file 1: of Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection

description: Table S1. Subset of genes responsive to nutrition quality with or without Nosema. List of a select number of genes differentially regulated in at least 2 diet treatments in infected or healthy bees. Genes were chosen based on known function or Drosophila ortholog. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.6999665.v1
title: Additional file 1: of Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection

description: Table S1. Subset of genes responsive to nutrition quality with or without Nosema. List of a select number of genes differentially regulated in at least 2 diet treatments in infected or healthy bees. Genes were chosen based on known function or Drosophila ortholog. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.6999650
title: Additional file 10: of Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection

description: Table S10. Potential immune/defense genes enriching GO:0043933~macromolecular complex subunit organization. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6999650.v1
title: Additional file 10: of Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection

description: Table S10. Potential immune/defense genes enriching GO:0043933~macromolecular complex subunit organization. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6999641
title: Additional file 8: of Simple deep sequencing-based post-remission MRD surveillance predicts clinical relapse in B-ALL

description: Tumor load or MRD levels measured by NGS and MCF in patient related and unrelated samples. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6999641.v1
title: Additional file 8: of Simple deep sequencing-based post-remission MRD surveillance predicts clinical relapse in B-ALL

description: Tumor load or MRD levels measured by NGS and MCF in patient related and unrelated samples. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6999635
title: Additional file 7: of Simple deep sequencing-based post-remission MRD surveillance predicts clinical relapse in B-ALL

description: Tumor load measured by NGS vs MCF assays for all evaluable diagnostic and follow-up B-ALL samples. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6999635.v1
title: Additional file 7: of Simple deep sequencing-based post-remission MRD surveillance predicts clinical relapse in B-ALL

description: Tumor load measured by NGS vs MCF assays for all evaluable diagnostic and follow-up B-ALL samples. (XLSX 14 kb)
DOI: 10.7284/111168
title: Multiplexed data collected during research cruise HRS1315 using a Delaware SMS instrument system onboard the platform RV Hugh R. Sharp
DOI: 10.6084/m9.figshare.6999566
title: Additional file 2: of Simple deep sequencing-based post-remission MRD surveillance predicts clinical relapse in B-ALL

description: Observed and expected MRD levels after serial dilution in representative B-ALL samples. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6999566.v1
title: Additional file 2: of Simple deep sequencing-based post-remission MRD surveillance predicts clinical relapse in B-ALL

description: Observed and expected MRD levels after serial dilution in representative B-ALL samples. (XLSX 15 kb)
DOI: 10.7284/115781
title: Multiplexed data collected during research cruise HRS1406 using a Delaware SMS instrument system onboard the platform RV Hugh R. Sharp
DOI: 10.6084/m9.figshare.6999458
title: Additional file 2 of Cross-genetic determination of maternal and neonatal immune mediators during pregnancy

description: Table S1. Statistics for 22 maternal immune mediator levels and 42 neonatal immune mediator levels after adjustment for individual-specific confounding factors. Table S2. Spearman’s correlation coefficient (φ) across ten maternal principal coordinates and ten fetal principal coordinates. Table S3. Statistics for 22 maternal immune mediator levels and 42 neonatal immune mediator levels after adjustment for individual-specific confounding factors. Table S4. Spearman’s correlation coefficient (φ) across cytokines and chemokines within mothers. Table S5. Spearman’s correlation coefficient (φ) across cytokines and chemokines within infants. Table S6. Spearman’s correlation coefficient (φ) across 15 overlapping immune molecules measured in maternal and neonatal datasets. Table S7. Significant genetic correlation across heritable covariate-adjusted neonatal immune cytokine/chemokine levels and corresponding linear correlation. Table S8. Comparison of maternal and fetal genome-wide significant associations (Table 2) and meta-analysis across populations. Table S9. Combined effects of maternal-fetal SNPs in linear regression models. (XLSX 836 kb)
DOI: 10.6084/m9.figshare.6999461
title: MOESM1 of Misidentification of runs of homozygosity islands in cattle caused by interference with copy number variation or large intermarker distances

description: Additional file 1: Table S1. Descriptive statistics of inbreeding levels based on the sum of merged ROH for each breed. Table S2. List of ROH islands for the three breeds. Table S3. List of CNVR for the three breeds. Table S4. Details of the positions of individual ROH islands, proportions of individuals with CNV at each marker and proportion of inbred individuals and percentage of individuals with copy gain or loss in each ROH island. Table S5. Description of the ROH islands that were identified as artefacts due to coverage gaps and consensus CNVR with both copy loss (copy loss or both copy loss and copy gain).
DOI: 10.6084/m9.figshare.6999458.v1
title: Additional file 2 of Cross-genetic determination of maternal and neonatal immune mediators during pregnancy

description: Table S1. Statistics for 22 maternal immune mediator levels and 42 neonatal immune mediator levels after adjustment for individual-specific confounding factors. Table S2. Spearman’s correlation coefficient (φ) across ten maternal principal coordinates and ten fetal principal coordinates. Table S3. Statistics for 22 maternal immune mediator levels and 42 neonatal immune mediator levels after adjustment for individual-specific confounding factors. Table S4. Spearman’s correlation coefficient (φ) across cytokines and chemokines within mothers. Table S5. Spearman’s correlation coefficient (φ) across cytokines and chemokines within infants. Table S6. Spearman’s correlation coefficient (φ) across 15 overlapping immune molecules measured in maternal and neonatal datasets. Table S7. Significant genetic correlation across heritable covariate-adjusted neonatal immune cytokine/chemokine levels and corresponding linear correlation. Table S8. Comparison of maternal and fetal genome-wide significant associations (Table 2) and meta-analysis across populations. Table S9. Combined effects of maternal-fetal SNPs in linear regression models. (XLSX 836 kb)
DOI: 10.6084/m9.figshare.6999461.v1
title: MOESM1 of Misidentification of runs of homozygosity islands in cattle caused by interference with copy number variation or large intermarker distances

description: Additional file 1: Table S1. Descriptive statistics of inbreeding levels based on the sum of merged ROH for each breed. Table S2. List of ROH islands for the three breeds. Table S3. List of CNVR for the three breeds. Table S4. Details of the positions of individual ROH islands, proportions of individuals with CNV at each marker and proportion of inbred individuals and percentage of individuals with copy gain or loss in each ROH island. Table S5. Description of the ROH islands that were identified as artefacts due to coverage gaps and consensus CNVR with both copy loss (copy loss or both copy loss and copy gain).
DOI: 10.6084/m9.figshare.6999434
title: Additional file 4: of Murine host response to Neisseria gonorrhoeae upper genital tract infection reveals a common transcriptional signature, plus distinct inflammatory responses that vary between reproductive cycle phases

description: File contains full results from GSEA analysis of phase:treatment interaction effect genes in table form. (XLSX 286 kb)
DOI: 10.6084/m9.figshare.6999434.v1
title: Additional file 4: of Murine host response to Neisseria gonorrhoeae upper genital tract infection reveals a common transcriptional signature, plus distinct inflammatory responses that vary between reproductive cycle phases

description: File contains full results from GSEA analysis of phase:treatment interaction effect genes in table form. (XLSX 286 kb)
DOI: 10.6084/m9.figshare.6999419
title: Additional file 3: of Deciphering the oviductal extracellular vesicles content across the estrous cycle: implications for the gametes-oviduct interactions and the environment of the potential embryo

description: Functional analysis of proteins, transcripts, and miRNAs identified in oEVs. Contains: Table S0. Functional analysis (FA) of the 500 most abundant mRNA. Table S1. ToppCluster FA of mRNA. Table S2. FA of all proteins. Table S3. ToppCluster FA of proteins. Table S4. Network of proteins downregulated in S1_a; Table S5. Network of proteins upregulated in S1_bbâ ; Table S6. Network of proteins upregulated in S2_c; Table S7. Network of proteins upregulated in S3_d; Table S8. Network of proteins downregulated in S4_e; Table S9. Target gene and Pathways analysis of selected miRNA with differential expression and high abundance in EVs in Stage 1 and Stage 4; Table S10. Heatmap data representing 13 selected miRNAs and their associated pathways (XLSX 151 kb)
DOI: 10.6084/m9.figshare.6999422
title: Additional file 3: of Murine host response to Neisseria gonorrhoeae upper genital tract infection reveals a common transcriptional signature, plus distinct inflammatory responses that vary between reproductive cycle phases

description: File contains full results from GSEA analysis of treatment effect genes in table form. (XLSX 281 kb)
DOI: 10.6084/m9.figshare.6999419.v1
title: Additional file 3: of Deciphering the oviductal extracellular vesicles content across the estrous cycle: implications for the gametes-oviduct interactions and the environment of the potential embryo

description: Functional analysis of proteins, transcripts, and miRNAs identified in oEVs. Contains: Table S0. Functional analysis (FA) of the 500 most abundant mRNA. Table S1. ToppCluster FA of mRNA. Table S2. FA of all proteins. Table S3. ToppCluster FA of proteins. Table S4. Network of proteins downregulated in S1_a; Table S5. Network of proteins upregulated in S1_bbâ ; Table S6. Network of proteins upregulated in S2_c; Table S7. Network of proteins upregulated in S3_d; Table S8. Network of proteins downregulated in S4_e; Table S9. Target gene and Pathways analysis of selected miRNA with differential expression and high abundance in EVs in Stage 1 and Stage 4; Table S10. Heatmap data representing 13 selected miRNAs and their associated pathways (XLSX 151 kb)
DOI: 10.6084/m9.figshare.6999422.v1
title: Additional file 3: of Murine host response to Neisseria gonorrhoeae upper genital tract infection reveals a common transcriptional signature, plus distinct inflammatory responses that vary between reproductive cycle phases

description: File contains full results from GSEA analysis of treatment effect genes in table form. (XLSX 281 kb)
DOI: 10.6084/m9.figshare.6999413
title: Additional file 2: of Murine host response to Neisseria gonorrhoeae upper genital tract infection reveals a common transcriptional signature, plus distinct inflammatory responses that vary between reproductive cycle phases

description: File contains full results from GSEA analysis of phase effect genes in table form. (XLSX 282 kb)
DOI: 10.6084/m9.figshare.6999413.v1
title: Additional file 2: of Murine host response to Neisseria gonorrhoeae upper genital tract infection reveals a common transcriptional signature, plus distinct inflammatory responses that vary between reproductive cycle phases

description: File contains full results from GSEA analysis of phase effect genes in table form. (XLSX 282 kb)
DOI: 10.6084/m9.figshare.6999386
title: Additional file 1: of Deciphering the oviductal extracellular vesicles content across the estrous cycle: implications for the gametes-oviduct interactions and the environment of the potential embryo

description: Proteomic and Transcriptomic data of oEVs content. Contains: Table S0. All transcripts data; Table S1. Differentially expressed transcripts (DET) S2 vs S1; Table S2. DET S3 vs S1; Table S3. DET S4 vs S1; Table S4. All DET (FDR 0.001); Table S5. Top 500 mRNA TPM; Table S6. All proteins MS data; Table S7. Differentially expressed proteins (DEP); Table S8. All proteins annotation; Table S9. Small ncRNA; Table S10. miRNA; Table S11. Overlap transcripts and proteins. (XLSX 7063 kb)
DOI: 10.6084/m9.figshare.6999389
title: Additional file 1: of Murine host response to Neisseria gonorrhoeae upper genital tract infection reveals a common transcriptional signature, plus distinct inflammatory responses that vary between reproductive cycle phases

description: This file contains the full, analyzed data set including results of all moderated t-tests as well as raw log2 expression values for all gene probes. (XLSX 22480 kb)
DOI: 10.6084/m9.figshare.6999386.v1
title: Additional file 1: of Deciphering the oviductal extracellular vesicles content across the estrous cycle: implications for the gametes-oviduct interactions and the environment of the potential embryo

description: Proteomic and Transcriptomic data of oEVs content. Contains: Table S0. All transcripts data; Table S1. Differentially expressed transcripts (DET) S2 vs S1; Table S2. DET S3 vs S1; Table S3. DET S4 vs S1; Table S4. All DET (FDR 0.001); Table S5. Top 500 mRNA TPM; Table S6. All proteins MS data; Table S7. Differentially expressed proteins (DEP); Table S8. All proteins annotation; Table S9. Small ncRNA; Table S10. miRNA; Table S11. Overlap transcripts and proteins. (XLSX 7063 kb)
DOI: 10.6084/m9.figshare.6999389.v1
title: Additional file 1: of Murine host response to Neisseria gonorrhoeae upper genital tract infection reveals a common transcriptional signature, plus distinct inflammatory responses that vary between reproductive cycle phases

description: This file contains the full, analyzed data set including results of all moderated t-tests as well as raw log2 expression values for all gene probes. (XLSX 22480 kb)
DOI: 10.5281/zenodo.4005775
title: SGB.Jan19

description: PhyloPhlAn metagenomic database "SGB.Jan19"
DOI: 10.5281/zenodo.4005774
title: SGB.Jan19

description: PhyloPhlAn metagenomic database "SGB.Jan19"
DOI: 10.6084/m9.figshare.6999374
title: Additional file 1 of Predicting overlapping protein complexes based on core-attachment and a local modularity structure

description: Predicting overlapping protein complexes based on core-attachment structure and a local modularity measure. (TEX 16 kb)
DOI: 10.6084/m9.figshare.6999374.v1
title: Additional file 1 of Predicting overlapping protein complexes based on core-attachment and a local modularity structure

description: Predicting overlapping protein complexes based on core-attachment structure and a local modularity measure. (TEX 16 kb)
DOI: 10.6084/m9.figshare.6999323
title: MOESM5 of Semi-field studies to better understand the impact of eave tubes on mosquito mortality and behaviour

description: Additional file 5. Mortality at recapture inside the enclosure. Number of dead mosquitoes at recapture in the enclosure depending on the treatments installed in the huts. The mortality 24 h post recapture is also available.
DOI: 10.6084/m9.figshare.6999326
title: Additional file 8: of Complete genome of streamlined marine actinobacterium Pontimonas salivibrio strain CL-TW6T adapted to coastal planktonic lifestyle

description: Table S5. Raw vertical index numbers for all P. salivibrio genes. (XLS 225 kb)
DOI: 10.6084/m9.figshare.6999323.v1
title: MOESM5 of Semi-field studies to better understand the impact of eave tubes on mosquito mortality and behaviour

description: Additional file 5. Mortality at recapture inside the enclosure. Number of dead mosquitoes at recapture in the enclosure depending on the treatments installed in the huts. The mortality 24 h post recapture is also available.
DOI: 10.6084/m9.figshare.6999326.v1
title: Additional file 8: of Complete genome of streamlined marine actinobacterium Pontimonas salivibrio strain CL-TW6T adapted to coastal planktonic lifestyle

description: Table S5. Raw vertical index numbers for all P. salivibrio genes. (XLS 225 kb)
DOI: 10.6084/m9.figshare.6999305
title: MOESM4 of Semi-field studies to better understand the impact of eave tubes on mosquito mortality and behaviour

description: Additional file 4. Absence of deflection. Number of mosquitoes recaptured per control hut regarding the treatment of the adjacent hut.
DOI: 10.6084/m9.figshare.6999305.v1
title: MOESM4 of Semi-field studies to better understand the impact of eave tubes on mosquito mortality and behaviour

description: Additional file 4. Absence of deflection. Number of mosquitoes recaptured per control hut regarding the treatment of the adjacent hut.
DOI: 10.6084/m9.figshare.6999284
title: MOESM3 of Semi-field studies to better understand the impact of eave tubes on mosquito mortality and behaviour

description: Additional file 3. Exit mortality. Number of mosquitoes recaptured post release inside experimental huts. Mosquitoes alive, dead and/or blood fed at recapture and 24 h post recapture.
DOI: 10.6084/m9.figshare.6999284.v1
title: MOESM3 of Semi-field studies to better understand the impact of eave tubes on mosquito mortality and behaviour

description: Additional file 3. Exit mortality. Number of mosquitoes recaptured post release inside experimental huts. Mosquitoes alive, dead and/or blood fed at recapture and 24 h post recapture.
DOI: 10.6084/m9.figshare.6999269
title: MOESM2 of Semi-field studies to better understand the impact of eave tubes on mosquito mortality and behaviour

description: Additional file 2. Impact of eave tubes on mosquito entry with open windows. This data file shows the number of mosquitoes captured in each hut each morning depending on the hut treatment (treated eave tubes or untreated eave tubes) and the date. The windows are open during the night. The hut location and the sleeper are also indicated.
DOI: 10.6084/m9.figshare.6999269.v1
title: MOESM2 of Semi-field studies to better understand the impact of eave tubes on mosquito mortality and behaviour

description: Additional file 2. Impact of eave tubes on mosquito entry with open windows. This data file shows the number of mosquitoes captured in each hut each morning depending on the hut treatment (treated eave tubes or untreated eave tubes) and the date. The windows are open during the night. The hut location and the sleeper are also indicated.
DOI: 10.6084/m9.figshare.6999251
title: MOESM1 of Semi-field studies to better understand the impact of eave tubes on mosquito mortality and behaviour

description: Additional file 1. Mosquitoes recruiting through eaves or windows. This data file gives the number of mosquitoes captured in each hut each morning depending on the hut treatment (open eaves or open windows) and the date. The sleeper is also noted.
DOI: 10.6084/m9.figshare.6999248
title: Additional file 8: of Where does diversity come from? Linking geographical patterns of morphological, genetic, and environmental variation in wall lizards

description: Individual multilocus genotypes for the nine microsatellite loci. Each allele is coded as its length, given in bp. Missing data is represented by “0”. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.6999251.v1
title: MOESM1 of Semi-field studies to better understand the impact of eave tubes on mosquito mortality and behaviour

description: Additional file 1. Mosquitoes recruiting through eaves or windows. This data file gives the number of mosquitoes captured in each hut each morning depending on the hut treatment (open eaves or open windows) and the date. The sleeper is also noted.
DOI: 10.6084/m9.figshare.6999248.v1
title: Additional file 8: of Where does diversity come from? Linking geographical patterns of morphological, genetic, and environmental variation in wall lizards

description: Individual multilocus genotypes for the nine microsatellite loci. Each allele is coded as its length, given in bp. Missing data is represented by “0”. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.6999236
title: Additional file 2: of Complete genome of streamlined marine actinobacterium Pontimonas salivibrio strain CL-TW6T adapted to coastal planktonic lifestyle

description: Table S2. Loci from P. salivibrio CL-TW6T grouped by pathway or functional category with vertical indexes: Loci involving light, Pathways for synthesizing isoprenoid products, Pathways of carbohydrate utilization and synthesis, Genes related to planktonic vs. biofilm lifestyle, Sigma factors and regulators, Systemic regulators in P. salivibrio CL-TW6T, Redox systems, Proteins involved in heat and cold shock, Genes related to osmotic stress, Possible exporters in P. salivibrio CL-TW6T, ABC importers, Amino acid biosynthesis and catabolism pathways, Miscellaneous paths, Cell wall synthesis, and Lipid pathways. (XLS 148 kb)