cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5286/isis.e.rb1920496-1
title: NR Investigation of Structural Basis Underlying Synergistic Binding of Lipopeptides and Antibiotics against Bacteria

description: In this part of the proposed work, we wish to explore how antibiotics and antimicrobial peptides interact with model lipid bilayers in the form of a supported lipid bilayer, mimicking key features of outer surfaces of red blood cells and bacteria. From home lab based dynamic light scattering and molecular dynamic simulations, we have found varying interactions associated with charges and hydrophobicity. NR is uniquely powerful at unraveling structural details associated with antibiotic binding to the bilayers. This work aims to investigate what happens when model lipid bilayers are exposed to lipopeptides, antibiotics and a combination of both, to offer structural basis underlying their synergy. This work will form a useful basis for us to compare how antimicrobial peptides and traditional antibiotics interact with representative membrane bilayer models, separately or combined.
DOI: 10.7910/dvn/wf4zo5/p5ywhd
title: Sedan_Wheel.h

description: :unav
DOI: 10.7910/dvn/wf4zo5/ti2pvv
title: Sedan_Vehicle.h

description: :unav
DOI: 10.7910/dvn/wf4zo5/uyey4m
title: Sedan_DoubleWishbone.cpp

description: :unav
DOI: 10.7910/dvn/wf4zo5/xhecht
title: Sedan_TMeasyTire.cpp

description: :unav
DOI: 10.20392/770c47b5-ece5-4248-b9bd-d2dea795de88
title: Trusted Tiny Things: Blackbox experiment and evaluation

description: This dataset contains data used to evaluate how T3 system and app performs under different set of conditions. Stats for Study 3 zip file is composed of several folders and subfolders where each represent a condition under which the T3 system was running. Each folder includes a README.txt file to explain what data are represented in the files contained withing the folder. The dataset also contains a Summary of the evaluation. For information about methodology and elaborated results please refer to the associated paper.
DOI: 10.5286/isis.e.rb1920156
title: Interactions of de Novo Designed Antimicrobial Lipopeptides with Model Leaflets of Inner Microbial Membranes  A NR study

description: In this work, we propose to exploit the unique capability of neutron reflection (NR) to study the structural changes of multi-component lipid monolayer models mimicking bacterial membranes upon their exposure to de novo designed ultrashort antimicrobial lipopeptides, focusing on unravelling their unusual mechanism of action. NR is the only technique that can determine the amount and distribution of these represent AMPs once adsorbed. We request 3 days on INTER using the event mode to complete this work.
DOI: 10.5286/isis.e.rb1920156-1
title: Interactions of de Novo Designed Antimicrobial Lipopeptides with Model Leaflets of Inner Microbial Membranes  A NR study

description: In this work, we propose to exploit the unique capability of neutron reflection (NR) to study the structural changes of multi-component lipid monolayer models mimicking bacterial membranes upon their exposure to de novo designed ultrashort antimicrobial lipopeptides, focusing on unravelling their unusual mechanism of action. NR is the only technique that can determine the amount and distribution of these represent AMPs once adsorbed. We request 3 days on INTER using the event mode to complete this work.
DOI: 10.7910/dvn/wjw1ha/6jf2c3
title: DataDictionary.docx

description: :unav
DOI: 10.5286/isis.e.rb1920698
title: A Surface Chemistry Approach to Microfluidic Capture of T-Cells for On-Body Therapeutic Manufacturing

description: In late 2017, T-cell therapy became the first gene therapy to have been approved by the US FDA and in 2018 approved for use in the UK. From the clinical data presented thus far, it appears these genetically modified T-cells (a specific type of white blood cell) present a CURE for some of the most aggressive forms of cancer (particularly acute Leukaemia in children). The current manufacture of T-cells is undertaken in a laboratory and can take up to 21 days, depending on the quality of the patient's starting cellular material. The long, complex and expensive process poses the risk of contamination and further complications due to patient variations. Here we propose experiments as part of a larger EPSRC-funded project to move this manufacturing process onto the body. Specifically, we will study a new approach to capture T-cells from whole blood embedded in a microfluidic device under flow.
DOI: 10.5286/isis.e.rb1920698-1
title: A Surface Chemistry Approach to Microfluidic Capture of T-Cells for On-Body Therapeutic Manufacturing

description: In late 2017, T-cell therapy became the first gene therapy to have been approved by the US FDA and in 2018 approved for use in the UK. From the clinical data presented thus far, it appears these genetically modified T-cells (a specific type of white blood cell) present a CURE for some of the most aggressive forms of cancer (particularly acute Leukaemia in children). The current manufacture of T-cells is undertaken in a laboratory and can take up to 21 days, depending on the quality of the patient's starting cellular material. The long, complex and expensive process poses the risk of contamination and further complications due to patient variations. Here we propose experiments as part of a larger EPSRC-funded project to move this manufacturing process onto the body. Specifically, we will study a new approach to capture T-cells from whole blood embedded in a microfluidic device under flow.
DOI: 10.20392/6dacaa40-6042-46b2-897b-1eea47427e35
title: Trusted Tiny Things: Bus Stop Evaluation Data

description: This dataset contains all data used to evaluate android mobile app and Trusted Tiny Things framework. This bundle contains: Questionnaire provided for participants Information sheet and consent form provided for participants Summary of the questionnaires in PDF and Excel format Analysis of the study Anonymised RDF dump Mysql Dump of participant's interaction with the Trusted Tiny Things system. Methodology and results are described in the associated publication.
DOI: 10.20392/04a2cb61-0cda-4207-b512-1b31bff5ba16
title: Trusted Tiny Things: Guidelines Draft Version

description: This dataset contains guidelines on how to describe personal data and provenance information in order to use our Trusted Tiny Things system. This is a draft version of the guidelines.
DOI: 10.5063/f1n58jq4
title: Species traits and occurrences for Trait Distribution Modelling (TDM) of Malagasy amphibians

description: Spatial Climate Change Vulnerability Assessment (CCVA) with few occurrences (n &lt; 10) is unreliable using Species Distribution Models (SDM). Trait Distribution Models (TDM) provide a mechanism to assess rare or threatened species with few occurrences, whereby species traits are used for spatial CCVA. Categorical species traits are collated from peer reviewed literature and ordinated by categorical principal components analysis (CATPCA) to remove the phylogenetic link. The ordinated data is then grouped by K-means clustering to produce trait complexes. Species occurrences for each trait complex are pooled and trait complexes can then be modelled by presence only SDM such as MaxEnt. Datasets provided are: categorical species traits and species occurrences for Malagasy amphibians. The data covers the extent of Madagascar. Species occurrence data: species are based on the IUCN 2014 assessment of Malagasy amphibians. Duplicates or occurrences in the same grid cell have not been removed from species occurrence data.
DOI: 10.5255/ukda-sn-853202
title: The Belfast mobility project: Intergroup contact, segregation and the time-geography of sectarian relations in Belfast 2015-2018
DOI: 10.20392/edc32510-d404-4e14-b630-01dad4e57d30
title: Trusted Tiny Things: Participatory Design Exercises

description: This dataset contains raw data (images of post it notes, summary of the exercises, study material and scripts used to devise participatory design exercises) in digital format. This data were used to aid development of Trusted Tiny Things infrastructure, ontological models and android application. Contact person for accessing full data is included.
DOI: 10.20392/f2a5a520-4367-409d-9f0e-1590d90653b0
title: (Magneto)resistivity data for CeMnAsO1-xFx (x = 0.025, 0.05 and 0.075) and NdMn1-xCoxAsO0.95F0.05 (x = 0.03 - 0.15)

description: Variable temperature magnetoresistivity data from 4 K - 300 K
DOI: 10.5281/zenodo.3361510
title: Cultural landscape approach for restoration of historic surrounding area of Soltaniyeh dome in order to access sustainable development tourism

description: Dataset is used in this study which was done as master project in the university of Tehran either is extracted from internet, pictures( physical observation), 3D max design, Autocad design, Aerial maps. The extenstion are .pdf., JPG,.MAX, .DWG, .JPG accrodingly. Dataset are the result of the project to design the surrounding of Soltaniye dome as one of the best historical place in IRAN as tourist attraction. Some data are drwan manually in. JPG format to show the traditional view of the region more friendly. The access to dataset is restricted since this belong to the university and therefore it will be published for short period of time in order to do the homework of the course of Open research data and data management plan in University of Catagenta. The reference for the content of thesis was mentioned in the reference parts. The thesis can be used not for public but more local since the content is in persian. The whole images and designs are instead is in standard format and can be used in public.
description: {"references": ["Vink, Landscape ecology, An Archaeological Perspectival (0912).Amsterdam: Elsevier.", "Cultural landscape in the national park service, The public historian. Vol.9 .no. 3, (spring 0911). University of California.", "Cook, E.A & vanlier, H. Landscape planning and Ecological networks, (0991). Amsterdam: Elsevier.", "Fowler, P.J. World Heritage Cultural Landscapes, (3112). Paris, France: UNESCO World Heritage Center.", "Hobbs, RJ, Restoration of disturbed ecosystems, (0999). Amsterdam: Elsevier. 9. Iannone, G. (3113). A History and the Ancient Maya State: Some Observations on the \"Dynamic Model\". American Anthropologist, 01100 March,", "Edward Hood, landscape archaeology, (0999). Chicago: Aldine Publishing", "Rossler, Mechtild, Linking nature and culture: world heritage cultural landscapes, (3113). Italy: UNESCO world heritage center.", "Operational guidelines for the implementation of world heritage convention UNESCO world heritage center, (3112). cultural landscape: the challenges of conservation. Italy: Unesco documentation center."]}
DOI: 10.20392/65445259-2b68-4fec-8be4-0a8f4d6f1892
title: X-ray diffraction data of IrSr2Sm2-xCexCu2O10 samples

description: Ambient temperature X-ray diffraction data of IrSr2Sm2-xCexCu2O10 samples (x = 0.5-0.8) and synchrotron data for x = 0.85 (recorded on beamlines I11 at Diamond light source and ID31 at the ESRF, Grenoble)
DOI: 10.5281/zenodo.2652083
title: SIEVE dataset

description: SIEVE dataset
DOI: 10.5519/qd.7p2j9isr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (21355 records)
DOI: 10.20392/06919a01-5332-4b19-bba4-73dfd4374869
title: Intention Analysis Jar

description: This is a java jar file that takes an English sentence as input and outputs its intention type of 'purchase', 'inform' or 'other'. For purchase intention, the agent and object are also analysed.
DOI: 10.20392/dfaa21d8-d8bf-4ca1-9fa0-244b10da697c
title: Formal Arguments, Preferences, and Natural Language Interfaces to Humans: an Empirical Evaluation

description: It has been claimed that computational models of argumentation provide support for complex decision making activities in part due to the close alignment between their semantics and human intuition. In this paper we assess this claim by means of an experiment: people’s evaluation of formal arguments — presented in plain English — is compared to the conclusions obtained from argumentation semantics. Our results show a correspondence between the acceptability of arguments by human subjects and the justification status prescribed by the formal theory in the majority of the cases. However, post-hoc analyses show that there are some significant deviations, which appear to arise from implicit knowledge regarding the domains in which evaluation took place. We argue that in order to create argumentation systems, designers must take implicit domain specific knowledge into account.
DOI: 10.7910/dvn/754j03/0t75zn
title: replication_Zittel_Nyhuis_Baumann_geographic_representation.do

description: :unav
DOI: 10.7910/dvn/754j03/dnhzuq
title: replication_data_Zittel_Nyhuis_Baumann_geographic_representation.tab

description: :unav
DOI: 10.7910/dvn/754j03/ftebvr
title: replication_codebook_Zittel_Nyhuis_Baumann_geographic_representation.pdf

description: :unav
DOI: 10.20392/eed73971-7cc5-42bf-9172-2a354cc18241
title: Trusted Tiny Things: Ontologies and SPARQL SPIN capability and policy rules

description: This dataset contains ontologies created for Trusted Tiny Things project. It includes : Ontology rules to determine capabilities of IoT devices Internet of Things Architecture lightweight model T3 ontological framework Simple Personal Data Sharing policy violation constraints Please refer to the associated publications for more information about this dataset.
DOI: 10.20392/96e2c2b4-ad82-494a-997e-ef37848d7ee3
title: Scottish Borders Roads

description: Details of the road network in the Scottish Borders area of the UK, formatted using Resource Description Framework (RDF) stored in a Jena TDB dataset (see http://jena.apache.org/documentation/tdb/). Data format is based on the OpenStreetMap (http://www.openstreetmap.org/#map=5/51.500/-0.100) representation of ways as a series of nodes.
DOI: 10.20392/500fffee-c968-4546-9972-b55a8a2eec41
title: Sand Transport under Irregular and Breaking Waves (SINBAD)

description: Dataset for Sand Transport under Irregular and Breaking Waves (SINBAD) EPSRC Grant Number EP/J00507X1 SINBAD is a collaborative project with the University of Twente in the Netherlands (STW-funded) and the University of Liverpool in the UK The primary data sets from SINBAD come from 3 major campaigns of laboratory experiments conducted in the Aberdeen Oscillatory Flow Tunnel at the University of Aberdeen and in the large wave flume (CIEM) at UPC, Barcelona:
DOI: 10.7910/dvn/veljkg/1aptvg
title: texdoc.sthlp

description: :unav
DOI: 10.7910/dvn/veljkg/ibnqhw
title: ivreg2.ado

description: :unav
DOI: 10.7910/dvn/veljkg/ndz4uu
title: sortobs.ado

description: :unav
DOI: 10.7910/dvn/veljkg/9z0qk6
title: double_lasso.R

description: :unav
DOI: 10.7910/dvn/veljkg/iploch
title: texsave.ado

description: :unav
DOI: 10.7910/dvn/veljkg/k8j6qc
title: rscript.sthlp

description: :unav
DOI: 10.7910/dvn/veljkg/ljdjoc
title: 4c. itt.do

description: :unav
DOI: 10.7910/dvn/veljkg/pp4qdj
title: 5b. make_figure1.do

description: :unav
DOI: 10.7910/dvn/veljkg/pyeknn
title: texdoc.ado

description: :unav
DOI: 10.7910/dvn/veljkg/yozpdd
title: .Rhistory

description: :unav
DOI: 10.7910/dvn/veljkg/zfxgvn
title: ingap.sthlp

description: :unav
DOI: 10.7910/dvn/veljkg/1zlhgm
title: appendfile.hlp

description: :unav
DOI: 10.7910/dvn/veljkg/37sc0e
title: ivreg2_p.ado

description: :unav
DOI: 10.7910/dvn/veljkg/ohpo9l
title: 2. participation_balance.do

description: :unav
DOI: 10.7910/dvn/veljkg/oozoll
title: README.txt

description: :unav
DOI: 10.7910/dvn/veljkg/tvpmrd
title: regsave.hlp

description: :unav
DOI: 10.7910/dvn/veljkg/f0tiba
title: 5. make_figures.do

description: :unav
DOI: 10.7910/dvn/veljkg/gp2fyf
title: wyoung.ado

description: :unav
DOI: 10.7910/dvn/veljkg/kia7zs
title: regsave.ado

description: :unav
DOI: 10.7910/dvn/veljkg/orkoit
title: livreg2.mlib

description: :unav
DOI: 10.7910/dvn/veljkg/q1s5lm
title: 4b. causal_effects_thru0119.do

description: :unav
DOI: 10.7910/dvn/veljkg/rfpzk3
title: regsave_tbl.ado

description: :unav
DOI: 10.7910/dvn/veljkg/zuygsu
title: 3. selection.do

description: :unav
DOI: 10.7910/dvn/veljkg/7tvtp6
title: ranktest.ado

description: :unav
DOI: 10.7910/dvn/veljkg/eoynts
title: appendfile.ado

description: :unav
DOI: 10.7910/dvn/veljkg/eswqda
title: cleanvars.ado

description: :unav
DOI: 10.7910/dvn/veljkg/eszyak
title: 4a. causal_effects_thru0717.do

description: :unav
DOI: 10.7910/dvn/veljkg/imlelh
title: ranktest.hlp

description: :unav
DOI: 10.7910/dvn/veljkg/m38cqq
title: _run_all.do

description: :unav
DOI: 10.7910/dvn/veljkg/xegwdn
title: 6. supporting_calcs.do

description: :unav
DOI: 10.7910/dvn/veljkg/zubl4s
title: ingap.ado

description: :unav
DOI: 10.7910/dvn/veljkg/b6ilda
title: ivreg2.sthlp

description: :unav
DOI: 10.7910/dvn/veljkg/hi4yqh
title: 1. clean_data.do

description: :unav
DOI: 10.7910/dvn/veljkg/mp3f3m
title: rscript.ado

description: :unav
DOI: 10.7910/dvn/veljkg/olxqz2
title: texsave.sthlp

description: :unav
DOI: 10.7910/dvn/veljkg/vkcmi1
title: regsave_tbl.hlp

description: :unav
DOI: 10.7910/dvn/veljkg/vnkrh1
title: sortobs.hlp

description: :unav
DOI: 10.7910/dvn/veljkg/ygnhao
title: wyoung.sthlp

description: :unav
DOI: 10.6080/k0k35rvg
title: Simultaneous extracellular recordings from midline thalamic nuclei, medial prefrontal cortex and CA1 from rats cycling through bouts of sleep and wakefulness
title: CRCNS.org hc-24

description: These data set was used in Varela & Wilson, 2019 (https://doi.org/10.1101/653436) to demonstrate and characterize the correlations between single cell activity in nuclei of the midline thalamus with the hallmark oscillations of non-REM sleep recorded simultaneously in the medial prefrontal cortex and the CA1 region of the hippocampus (slow oscillation, spindles, sharp-wave ripples) in behaving rats. The data set consists of recordings from three sessions, with LFPs and units from 3 different rats for a total of approximately 3.5 h of recording (52mins, session 1; 69mins session 2; 93mins session 3). During the recording the animals were allowed to rest in a quiet enclosure and cycled through bouts of wakefulness and sleep. Methods used to gather and process the data, and results from these experiments are described in: mPFC Spindle Cycles Organize Sparse Thalamic Activation and Recently Active CA1 cells During non-REM Sleep. Varela, C; Wilson, MA. doi: https://doi.org/10.1101/653436
DOI: 10.5063/f1hd7t0t
title: Plural breeding and life history in mammals

description: The data presented in these sheets is the basis for the analyses presented in: Lukas D. & Clutton-Brock (2019) Life histories and the evolution of plural breeding in mammals. (in prep)
DOI: 10.5061/dryad.tr62rm1/1
title: Dryad Item 10.5061/DRYAD.TR62RM1/1

description: (:tba)
DOI: 10.6073/pasta/f6f2a27b945aca9a6305cc6247ba796a
title: Biomass of Spartina alterniflora collected in July 2018 from various marsh edges around Plum Island Sound, MA, PIE LTER.

description: Biomass of Spartina alterniflora was collected at various locations within the Plum Island Sound estuary. Samples were collected during July 2018. Only Spartina alterniflora was collected. To collect biomass, 25 X 25 cm quadrats were placed over the plants. Aboveground biomass was clipped to soil surface. Biomass was dried in the lab in a drying oven until a constant weight was reached, and then weighed. Biomass values were then convertedto grams of dry weight per square meter (g/m2).
DOI: 10.5281/zenodo.3361735
title: Embrapa Wine Grape Instance Segmentation Dataset – Embrapa WGISD

description: <strong>Embrapa Wine Grape Instance Segmentation Dataset – Embrapa WGISD</strong> For a detailed description of this dataset, following the <em>datasheet for the datasets</em> recommendation proposed by Gebru et al., check the <strong>README.md</strong> file. <strong>Motivation for Dataset Creation</strong> <em>Why was the dataset created?</em> Embrapa WGISD (<em>Wine Grape Instance Segmentation Dataset</em>) was created to provide images and annotation to study <em>object detection and instance segmentation</em> for image-based monitoring and field robotics in viticulture. It provides instances from five different grape varieties taken on field. These instances shows variance in grape pose,<br> illumination and focus, including genetic and phenological variations such as shape, color and compactness. <em>What (other) tasks could the dataset be used for?</em> Possible uses include relaxations of the instance segmentation problem: classification (Is a grape in the image?), semantic segmentation (What are the "grape pixels" in the image?), and object detection (Where are the grapes in the image?). The WGISD can also be used in grape variety identification.
description: The building of the WGISD dataset was supported by the Embrapa SEG Project 01.14.09.001.05.04, Image-based metrology for Precision Agriculture and Phenotyping, and the CNPq PIBIC Program (grants 161165/2017-6 and 125044/2018-6).
description: {"references": ["Santos, T.T., Souza, L.L., Santos, A.M., & Avila, S.E. (2019). Grape detection, segmentation and tracking using deep neural networks and three-dimensional association. ArXiv, abs/1907.11819."]}
DOI: 10.5281/zenodo.3361728
title: alexlwhite/WhiteBoyntonYeatman2019_Repository: Public repository for White, Boynton & Yeatman (2019)

description: This is the public repository of data and code for the study described in our 2019 Cortex article, "The link between reading ability and visual spatial attention across development."
DOI: 10.5281/zenodo.3361729
title: alexlwhite/WhiteBoyntonYeatman2019_Repository: Public repository for White, Boynton & Yeatman (2019)

description: This is the public repository of data and code for the study described in our 2019 Cortex article, "The link between reading ability and visual spatial attention across development."
DOI: 10.15468/vv64tn
title: The first proven oxychilid land snail endemic to China (Eupulmonata, Gastrodontoidea)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wu, Min, Liu, Zhengping (2019): The first proven oxychilid land snail endemic to China (Eupulmonata, Gastrodontoidea). ZooKeys 870: 33-50, DOI: http://dx.doi.org/10.3897/zookeys.870.32903, URL: http://dx.doi.org/10.3897/zookeys.870.32903
DOI: 10.6080/k0fb514j
title: The pre-, peri-, and post-saccadic responses of MT neurons in response to random probe stimuli flashed on screen.
title: CRCNS.org mt-3

description: The data contain the spiking responses of 41 neurons in the middle temporal cortex of two macaque monkeys during a visually-guided saccade task. In the experiment, monkeys were trained to fixate on a fixation point located in the center of the screen. After they fixated, a saccade target appeared 10 degrees away horizontally. Then, after a randomized time interval, the fixation point disappeared, cuing the monkeys to make a saccade to the target point. During this procedure, a series of randomly located probe stimuli were presented on the screen in a 9 by 9 grid of possible locations. Results from the experiment are described in detail in: Kaiser Niknam, Amir Akbarian, Kelsey Clark, Yasin Zamani, Behrad Noudoost, Neda Nategh, "Characterizing and dissociating multiple time-varying modulatory computations influencing neuronal activity", PLOS Computational Biology, accepted.