cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16665931
title: Supplementary Material for: Short- and Long-Term Functional Connectivity Differences Associated with Alzheimer’s Disease Progression

description: <b><i>Introduction:</i></b> Progression of amnestic mild cognitive impairment (aMCI) to Alzheimer’s disease (AD) is a clinical event with highly variable progression rates varying from 10–15% up to 30–34%. Functional connectivity (FC), the temporal similarity between spatially remote neurophysiological events, has previously been reported to differ between aMCI patients who progress to AD (pMCI) and those who do not (i.e., remain stable; sMCI). However, these reports had a short-term follow-up and do not provide insight into long-term AD progression. <b><i>Methods:</i></b> Seventy-nine participants with a baseline and 78 with a 12-month, 51 with a 24-month, and 22 with a +48-month follow-up resting-state fMRI with aMCI diagnosis from the Alzheimer’s Disease Neuroimaging Initiative database were included. FC was assessed using the CONN toolbox. Local correlation and group independent component analysis were utilized to compare regional functional coupling and between-network FC, respectively, between sMCI and pMCI groups. Two-sample <i>t</i> tests were used to test for statistically significant differences between groups, and paired <i>t</i>-tests were used to assess cognitive changes over time. <b><i>Results:</i></b> All participants (i.e., 66 sMCI and 19 pMCI) had a baseline and a year follow-up fMRI scan. Progression from aMCI to AD occurred in 19 patients (10 at 12 months, 5 at 24 months, and 4 at &gt;48 months), while 73 MCI patients remained cognitively stable (sMCI). The pMCI and sMCI cognitive profiles were different. More between-network FC than regional functional coupling differences were present between sMCI and pMCI patients. Activation in the salience network (SN) and the default mode network (DMN) was consistently different between sMCI and pMCI patients across time. <b><i>Discussion:</i></b> sMCI and pMCI patients have different cognitive and FC profiles. Only pMCI patients showed cognitive differences across time. The DMN and SN showed local correlation and between-network FC differences between the sMCI and pMCI patient groups at multiple moments in time.
DOI: 10.6084/m9.figshare.16665931.v1
title: Supplementary Material for: Short- and Long-Term Functional Connectivity Differences Associated with Alzheimer’s Disease Progression

description: <b><i>Introduction:</i></b> Progression of amnestic mild cognitive impairment (aMCI) to Alzheimer’s disease (AD) is a clinical event with highly variable progression rates varying from 10–15% up to 30–34%. Functional connectivity (FC), the temporal similarity between spatially remote neurophysiological events, has previously been reported to differ between aMCI patients who progress to AD (pMCI) and those who do not (i.e., remain stable; sMCI). However, these reports had a short-term follow-up and do not provide insight into long-term AD progression. <b><i>Methods:</i></b> Seventy-nine participants with a baseline and 78 with a 12-month, 51 with a 24-month, and 22 with a +48-month follow-up resting-state fMRI with aMCI diagnosis from the Alzheimer’s Disease Neuroimaging Initiative database were included. FC was assessed using the CONN toolbox. Local correlation and group independent component analysis were utilized to compare regional functional coupling and between-network FC, respectively, between sMCI and pMCI groups. Two-sample <i>t</i> tests were used to test for statistically significant differences between groups, and paired <i>t</i>-tests were used to assess cognitive changes over time. <b><i>Results:</i></b> All participants (i.e., 66 sMCI and 19 pMCI) had a baseline and a year follow-up fMRI scan. Progression from aMCI to AD occurred in 19 patients (10 at 12 months, 5 at 24 months, and 4 at &gt;48 months), while 73 MCI patients remained cognitively stable (sMCI). The pMCI and sMCI cognitive profiles were different. More between-network FC than regional functional coupling differences were present between sMCI and pMCI patients. Activation in the salience network (SN) and the default mode network (DMN) was consistently different between sMCI and pMCI patients across time. <b><i>Discussion:</i></b> sMCI and pMCI patients have different cognitive and FC profiles. Only pMCI patients showed cognitive differences across time. The DMN and SN showed local correlation and between-network FC differences between the sMCI and pMCI patient groups at multiple moments in time.
DOI: 10.6084/m9.figshare.16667410
title: linux.txt

description: data
DOI: 10.6084/m9.figshare.16667410.v1
title: linux.txt

description: data
DOI: 10.6084/m9.figshare.15097121.v1
title: Population genetic data for 12 X-STR loci in the Central Saudi region using investigator Argus X-12 amplification kit

description: X-chromosome short tandem repeat (X-STR) markers are important in forensic identity investigations and kinship analysis. In the current study, the distribution of 12 X-STR loci located in four linkage groups was evaluated using Investigator<sup>®</sup> Argus X-12 Amplification Kit in 200 unrelated healthy individuals (105 males and 95 females) from the central region of Saudi Arabia in order to develop an allelic frequency database for the markers included in the kit. DXS10146 locus was the most informative with 21 alleles, while DXS8378 locus was the least with five alleles. Forensic parameters showed that all X-STRs loci, either as individual markers or as linkage groups, provide genetic information with high discrimination that is appropriate for forensic purposes with polymorphism information content (PIC), power of exclusion (PE), and paternity index (PI) varying from 0.61211 to 0.917979, 0.38722 to 0.842949, and 0.038416 to 0.16367, respectively. The pairwise genetic distance fixation index (Fst) results showed that the Saudi population is genetically closer to the Egyptian and Emirati populations and distant to the Turkish population. The current study revealed that Investigator<sup>®</sup> Argus 12 X-STR kit would support the forensic application, kinship testing involving female offspring, and human identification in the Saudi population.
DOI: 10.6084/m9.figshare.15124362
title: Worldwide distribution of <i>Syllophopsis subcoeca</i> (Hymenoptera: Formicidae), an Old-World species long known only from the West Indies

description: <i>Syllophopsis</i> (Hymenoptera: Formicidae) is a taxonomically difficult and possibly polyphyletic genus of tiny, inconspicuous ants. <i>Syllophopsis subcoeca</i> (Emery) was described in 1894 from St Thomas, US Virgin Islands. This remained the sole published record of <i>S. subcoeca</i> for more than 100 years. Here, we present new descriptions of the worker and queen castes, and document a greatly expanded known geographic distribution of <i>S. subcoeca</i> in both the New World and the Old World. We compiled published and unpublished <i>S. subcoeca</i> specimen records from 67 sites. These include 59 New World sites on 12 West Indian islands (Barbados, Dominica, Grenada, Guadeloupe, Martinique, Nevis, St Croix, St John, St. Kitts, St Lucia, Tortola and Trinidad) and in southern Florida. In addition, we report records of <i>S. subcoeca</i> from eight Old World sites, in Singapore and on two islands of the Northern Mariana Islands (Tinian and Saipan). Published records of <i>Syllophopsis</i> cf. <i>subcoeca</i> from Australia, Christmas Island and Sri Lanka are probably true <i>S. subcoeca</i>. All other <i>Syllophopsis</i> species appear to have originated in the Old World; therefore, the same is almost certainly true of <i>S. subcoeca</i>. It is likely that <i>S. subcoeca</i> was introduced to the West Indies and Florida through human commerce. <i>Syllophopsis subcoeca</i> appears to be a very recent arrival to Florida, where it is now known from nine sites in Miami-Dade and Broward counties. It remains to be seen whether <i>S. subcoeca</i> will become widespread in Florida. It seems unlikely that this <i>S. subcoeca</i> will become a significant ecological or agricultural pest.
DOI: 10.6084/m9.figshare.15124362.v1
title: Worldwide distribution of <i>Syllophopsis subcoeca</i> (Hymenoptera: Formicidae), an Old-World species long known only from the West Indies

description: <i>Syllophopsis</i> (Hymenoptera: Formicidae) is a taxonomically difficult and possibly polyphyletic genus of tiny, inconspicuous ants. <i>Syllophopsis subcoeca</i> (Emery) was described in 1894 from St Thomas, US Virgin Islands. This remained the sole published record of <i>S. subcoeca</i> for more than 100 years. Here, we present new descriptions of the worker and queen castes, and document a greatly expanded known geographic distribution of <i>S. subcoeca</i> in both the New World and the Old World. We compiled published and unpublished <i>S. subcoeca</i> specimen records from 67 sites. These include 59 New World sites on 12 West Indian islands (Barbados, Dominica, Grenada, Guadeloupe, Martinique, Nevis, St Croix, St John, St. Kitts, St Lucia, Tortola and Trinidad) and in southern Florida. In addition, we report records of <i>S. subcoeca</i> from eight Old World sites, in Singapore and on two islands of the Northern Mariana Islands (Tinian and Saipan). Published records of <i>Syllophopsis</i> cf. <i>subcoeca</i> from Australia, Christmas Island and Sri Lanka are probably true <i>S. subcoeca</i>. All other <i>Syllophopsis</i> species appear to have originated in the Old World; therefore, the same is almost certainly true of <i>S. subcoeca</i>. It is likely that <i>S. subcoeca</i> was introduced to the West Indies and Florida through human commerce. <i>Syllophopsis subcoeca</i> appears to be a very recent arrival to Florida, where it is now known from nine sites in Miami-Dade and Broward counties. It remains to be seen whether <i>S. subcoeca</i> will become widespread in Florida. It seems unlikely that this <i>S. subcoeca</i> will become a significant ecological or agricultural pest.
DOI: 10.6084/m9.figshare.15124316
title: Phylogenetic position of the poorly known montane cascade frog <i>Amolops monticola</i> (Ranidae) and description of a new closely related species from Northeast India

description: The phylogenetic position of <i>Amolops monticola</i>, a cascade frog species known for over 150 years, remains unknown. Yet over the years new taxa have been frequently described in the ambiguously recognised <i>A. monticola</i> species group, based on morphology and presumed phylogenetic affinities. Here we report fresh collections of <i>A. monticola</i> from the Indian Himalayas and clarify its identity with new molecular and morphological evidence. Furthermore, our surveys in the Northeast Indian State of Arunachal Pradesh have led to the discovery of another new species in the <i>A. monticola</i> group from Siang River basin encompassing the Adi hills (historically known as Abor hills). The new species, formally described as <i>Amolops adicola</i> sp. nov., is morphologically distinguished from its congeners by a suite of characters that include adult size, body colouration and markings, skin texture, snout shape, foot webbing and digit tip morphology, in addition to significant morphometric distinctness observed in principal component analysis. Phylogenetically, the new species is recovered as a well-supported sister taxon of <i>A. monticola</i>, based on Bayesian and maximum likelihood inferences as well as Bayesian Poisson Tree Processes (bPTP) species delimitation analysis using 2001 bp of mitochondrial DNA (16S rRNA, cytochrome c oxidase subunit I and NADH dehydrogenase 2). It differs from other known members of the group by considerable genetic distances in the studied loci: ≥ 4.3% at 16S, ≥ 6.1% at COI and ≥ 7.0% at ND2. The study also shows for the first time the phylogenetic affinities of another Indian member of the <i>A. monticola</i> group, <i>A. kohimaensis</i>. Altogether, the new insights resolve the long-existing enigma surrounding <i>A. monticola</i> and facilitate a better understanding of systematic relationships within the large <i>A. monticola</i> species group. Our findings also emphasise the need for further dedicated studies on the cascade frogs of Northeast India.
DOI: 10.6084/m9.figshare.15124316.v1
title: Phylogenetic position of the poorly known montane cascade frog <i>Amolops monticola</i> (Ranidae) and description of a new closely related species from Northeast India

description: The phylogenetic position of <i>Amolops monticola</i>, a cascade frog species known for over 150 years, remains unknown. Yet over the years new taxa have been frequently described in the ambiguously recognised <i>A. monticola</i> species group, based on morphology and presumed phylogenetic affinities. Here we report fresh collections of <i>A. monticola</i> from the Indian Himalayas and clarify its identity with new molecular and morphological evidence. Furthermore, our surveys in the Northeast Indian State of Arunachal Pradesh have led to the discovery of another new species in the <i>A. monticola</i> group from Siang River basin encompassing the Adi hills (historically known as Abor hills). The new species, formally described as <i>Amolops adicola</i> sp. nov., is morphologically distinguished from its congeners by a suite of characters that include adult size, body colouration and markings, skin texture, snout shape, foot webbing and digit tip morphology, in addition to significant morphometric distinctness observed in principal component analysis. Phylogenetically, the new species is recovered as a well-supported sister taxon of <i>A. monticola</i>, based on Bayesian and maximum likelihood inferences as well as Bayesian Poisson Tree Processes (bPTP) species delimitation analysis using 2001 bp of mitochondrial DNA (16S rRNA, cytochrome c oxidase subunit I and NADH dehydrogenase 2). It differs from other known members of the group by considerable genetic distances in the studied loci: ≥ 4.3% at 16S, ≥ 6.1% at COI and ≥ 7.0% at ND2. The study also shows for the first time the phylogenetic affinities of another Indian member of the <i>A. monticola</i> group, <i>A. kohimaensis</i>. Altogether, the new insights resolve the long-existing enigma surrounding <i>A. monticola</i> and facilitate a better understanding of systematic relationships within the large <i>A. monticola</i> species group. Our findings also emphasise the need for further dedicated studies on the cascade frogs of Northeast India.
DOI: 10.5281/zenodo.5519589
title: data sets for the article Short‑term impact of crop diversifcation on soil carbon fuxes and balance in rainfed and irrigated woody cropping systems under semiarid Mediterranean conditions

description: Diversifcation practices such as intercropping in woody cropping systems have recently been proposed as a promising management strategy for addressing problems related to soil degradation, climate change mitigation and food security. In this study, we assess the impact of several diversifcation practices in diferent management regimes on the main carbon fuxes regulating the soil carbon balance under semiarid Mediterranean conditions.
DOI: 10.5281/zenodo.5519588
title: data sets for the article Short‑term impact of crop diversifcation on soil carbon fuxes and balance in rainfed and irrigated woody cropping systems under semiarid Mediterranean conditions

description: Diversifcation practices such as intercropping in woody cropping systems have recently been proposed as a promising management strategy for addressing problems related to soil degradation, climate change mitigation and food security. In this study, we assess the impact of several diversifcation practices in diferent management regimes on the main carbon fuxes regulating the soil carbon balance under semiarid Mediterranean conditions.
DOI: 10.5281/zenodo.5519210
title: Local Earthquake Tomography Code and Data for study the Lithosphere Structure in the Collision Zone of the NW Himalayas

description: The tomography model presented in the paper "Lithosphere Structure in the Collision Zone of the NW Himalayas Revealed by Local Earthquake Tomography" are obtained using the LOTOS code by Koulakov (2009). Here, we present the full version of the code with initial data and parameters used for calculating P and S velocity models beneath the NW Himalaya. This version of the code is adopted for the Windows OS and contains the entire program listing and the full project structure for Microsoft Visual Studio 2010 and Intel Visual Fortran. Detailed description of the code can be found at www.ivan-art.com/science/LOTOS
description: The reported study was funded by the Russian Foundation for Basic Research, project number 19-35-60002
description: {"references": ["Koulakov, I. LOTOS code for local earthquake tomographic inversion: Benchmarks for testing tomographic algorithms. Bull. Seismol. Soc. Am. 2009, 99, 194\u2013214. http://dx.doi.org/10.1785/0120080013"]}
DOI: 10.5281/zenodo.5519209
title: Local Earthquake Tomography Code and Data for study the Lithosphere Structure in the Collision Zone of the NW Himalayas

description: The tomography model presented in the paper "Lithosphere Structure in the Collision Zone of the NW Himalayas Revealed by Local Earthquake Tomography" are obtained using the LOTOS code by Koulakov (2009). Here, we present the full version of the code with initial data and parameters used for calculating P and S velocity models beneath the NW Himalaya. This version of the code is adopted for the Windows OS and contains the entire program listing and the full project structure for Microsoft Visual Studio 2010 and Intel Visual Fortran. Detailed description of the code can be found at www.ivan-art.com/science/LOTOS
description: The reported study was funded by the Russian Foundation for Basic Research, project number 19-35-60002
description: {"references": ["Koulakov, I. LOTOS code for local earthquake tomographic inversion: Benchmarks for testing tomographic algorithms. Bull. Seismol. Soc. Am. 2009, 99, 194\u2013214. http://dx.doi.org/10.1785/0120080013"]}
DOI: 10.5281/zenodo.5081722
title: Drosophila suzukii population dynamics and control efficiency of mineral dusts with a focus on grape protection

description: The invasive pest<em> Drosophila suzukii</em> is threatening berry production. It is mainly managed via chemical control, which is associated with consumer and environmental concerns. Here, we tested the efficiency of mineral dusts under field and laboratory conditions. Furthermore, population dynamics were studied in a vineyard and its surroundings. The kaolin products Cutisan and Surround®, as well as the CaCO<sub>3</sub> product Carboliq had neither insecticidal nor repellent effects on <em>Drosophila suzukii</em> adults in laboratory choice tests with grapes at concentrations of up to 2% (w/v). Cutisan and Surround® significantly reduced the number of deposited eggs (-41.9% and -49.3%, respectively) while Carboliq had no effect on the oviposition under laboratory conditions. The Surround® treatment significantly reduced the number of flies trapped on 09/09/2020 at a test vineyard. Depending on the assessment date and treatment, between 59 and 84% of the flies in the bait traps were females. The number of eggs found in fruit treated with Carboliq in the field was higher at each assessment date than in the control but this difference was not statistically significant. Cutisan and Surround® applications in the field showed an equivalent or lower average number of eggs compared to the control but this difference was only significant on 24/09/2020. The highest number of <em>D. suzukii</em> adults was observed around September in the field and a decline of the population occurred in the winter months until July. In epidemic years, temperature - humidity - combinations prior to population peaks were quite stable with low humidity being associated with a high temperature and <em>vice-versa</em>. In non-epidemic years, humidity fluctuated more than in epidemic years and temperatures were lower before population peaks. The effect of global radiation on population maxima seemed to be minor.
DOI: 10.5281/zenodo.5081721
title: Drosophila suzukii population dynamics and control efficiency of mineral dusts with a focus on grape protection

description: The invasive pest<em> Drosophila suzukii</em> is threatening berry production. It is mainly managed via chemical control, which is associated with consumer and environmental concerns. Here, we tested the efficiency of mineral dusts under field and laboratory conditions. Furthermore, population dynamics were studied in a vineyard and its surroundings. The kaolin products Cutisan and Surround®, as well as the CaCO<sub>3</sub> product Carboliq had neither insecticidal nor repellent effects on <em>Drosophila suzukii</em> adults in laboratory choice tests with grapes at concentrations of up to 2% (w/v). Cutisan and Surround® significantly reduced the number of deposited eggs (-41.9% and -49.3%, respectively) while Carboliq had no effect on the oviposition under laboratory conditions. The Surround® treatment significantly reduced the number of flies trapped on 09/09/2020 at a test vineyard. Depending on the assessment date and treatment, between 59 and 84% of the flies in the bait traps were females. The number of eggs found in fruit treated with Carboliq in the field was higher at each assessment date than in the control but this difference was not statistically significant. Cutisan and Surround® applications in the field showed an equivalent or lower average number of eggs compared to the control but this difference was only significant on 24/09/2020. The highest number of <em>D. suzukii</em> adults was observed around September in the field and a decline of the population occurred in the winter months until July. In epidemic years, temperature - humidity - combinations prior to population peaks were quite stable with low humidity being associated with a high temperature and <em>vice-versa</em>. In non-epidemic years, humidity fluctuated more than in epidemic years and temperatures were lower before population peaks. The effect of global radiation on population maxima seemed to be minor.
DOI: 10.6084/m9.figshare.16397864
title: Dataset S1: from Characteristics of the 100 largest modern zoonotic disease outbreaks

description: Data for the 100 largest and random background data.
DOI: 10.6084/m9.figshare.16397864.v1
title: Dataset S1: from Characteristics of the 100 largest modern zoonotic disease outbreaks

description: Data for the 100 largest and random background data.
DOI: 10.6084/m9.figshare.16397867
title: Dataset S3: from Characteristics of the 100 largest modern zoonotic disease outbreaks

description: Data on sample bias covariates for the outbreaks listed in Dataset S1 (random background outbreaks).
DOI: 10.6084/m9.figshare.16397867.v2
title: Dataset S3: from Characteristics of the 100 largest modern zoonotic disease outbreaks

description: Data on sample bias covariates for the outbreaks listed in Dataset S1 (random background outbreaks).
DOI: 10.6084/m9.figshare.16397867.v1
title: Dataset S3: from Characteristics of the 100 largest modern zoonotic disease outbreaks

description: Data on sample bias covariates for the outbreaks listed in Dataset S1 (random background outbreaks).
DOI: 10.6084/m9.figshare.16397873.v1
title: Dataset S2: from Characteristics of the 100 largest modern zoonotic disease outbreaks

description: Data for the 100 largest and typical background outbreaks.
DOI: 10.6084/m9.figshare.16397876.v2
title: Dataset S4: from Characteristics of the 100 largest modern zoonotic disease outbreaks

description: Data on sample bias covariates for the outbreaks listed in Dataset S2 (typical background outbreaks).
DOI: 10.6084/m9.figshare.16397876
title: Dataset S4: from Characteristics of the 100 largest modern zoonotic disease outbreaks

description: Data on sample bias covariates for the outbreaks listed in Dataset S2 (typical background outbreaks).