cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25505/fiz.icsd.cc279shv
title: CSD 2064987: Experimental Crystal Structure Determination

description: Related Article: Tiglet Besara, Daniel C. Ramirez, Jifeng Sun, Nathaniel W. Falb, Wangwei Lan, Jeffrey B. Whalen, David J. Singh, Theo Siegrist|2023|J.Solid State Chem.|321|123932|doi:10.1016/j.jssc.2023.123932
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc279sjw
title: CSD 2064988: Experimental Crystal Structure Determination

description: Related Article: Tiglet Besara, Daniel C. Ramirez, Jifeng Sun, Nathaniel W. Falb, Wangwei Lan, Jeffrey B. Whalen, David J. Singh, Theo Siegrist|2023|J.Solid State Chem.|321|123932|doi:10.1016/j.jssc.2023.123932
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17909/qhnr-e585
title: Data from EIGER IV: The cool 104K circumgalactic environment of high-z galaxies reveals remarkably efficient IGM enrichment
DOI: 10.5281/zenodo.10403218
title: SSCS and DCS fastq data for B6 (wildtype) conplastic mice mitochondrial DNA profiling

description: The SSCS and DCS fq files for B6 (wildtype) mice associated with https://doi.org/10.5281/zenodo.10127101 repo.
DOI: 10.5281/zenodo.10403219
title: SSCS and DCS fastq data for B6 (wildtype) conplastic mice mitochondrial DNA profiling

description: The SSCS and DCS fq files for B6 (wildtype) mice associated with https://doi.org/10.5281/zenodo.10127101 repo.
DOI: 10.13026/5yxs-9t42
title: Regulation of Brain Cognitive States through Auditory, Gustatory, and Olfactory Stimulation with Wearable Monitoring

description: Inspired by advances in wearable technologies, we design and perform human-
subject experiments to investigate the impacts of applying safe actuation
(i.e., auditory, gustatory, and olfactory) for the purpose of regulating the
cognitive arousal state and enhancing the performance state. In two separate
experiments, participants are instructed to engage in a working memory task
known as the  _n-back_ task. To modulate their brain state, we introduce
various interventions, including listening to different genres of music in the
first experiment, and consuming coffee and smelling perfume in the second
experiment. Employing only wearable devices for human monitoring and using
safe actuation intervention are the key components of the performed
experiments. This dataset contains subjects' **correct/incorrect responses**
along with their **reaction times**. In these experiments, we employed two
Empatica wristbands and one muse headband to collect their physiological data.
The data from Empatica contains participants '  **electrodermal activity
(EDA)** , **  heart rate (HR)**, **  blood volume pulses (BVP)**, **  skin
surface temperature**, **  Photoplethysmography (PPG), **and 3-axis
**accelerometer data.**  Using a muse headband, we also collected
**Electroencephalography  (EEG)** signals from four sensors. By creating a
dataset that addresses the current lack of publicly available data for
utilizing wearable devices and safe everyday stimuli to manage internal brain
states, our research enables further investigations into machine learning and
system identification. It eventually paves the way for smarter work
environments in the future. The ultimate goal is to develop practical and
automated personalized closed-loop systems that can effectively regulate
internal brain states and enhance the overall quality of life.
DOI: 10.13026/jr6f-wc85
title: Regulation of Brain Cognitive States through Auditory, Gustatory, and Olfactory Stimulation with Wearable Monitoring

description: Inspired by advances in wearable technologies, we design and perform human-
subject experiments to investigate the impacts of applying safe actuation
(i.e., auditory, gustatory, and olfactory) for the purpose of regulating the
cognitive arousal state and enhancing the performance state. In two separate
experiments, participants are instructed to engage in a working memory task
known as the  _n-back_ task. To modulate their brain state, we introduce
various interventions, including listening to different genres of music in the
first experiment, and consuming coffee and smelling perfume in the second
experiment. Employing only wearable devices for human monitoring and using
safe actuation intervention are the key components of the performed
experiments. This dataset contains subjects' **correct/incorrect responses**
along with their **reaction times**. In these experiments, we employed two
Empatica wristbands and one muse headband to collect their physiological data.
The data from Empatica contains participants '  **electrodermal activity
(EDA)** , **  heart rate (HR)**, **  blood volume pulses (BVP)**, **  skin
surface temperature**, **  Photoplethysmography (PPG), **and 3-axis
**accelerometer data.**  Using a muse headband, we also collected
**Electroencephalography  (EEG)** signals from four sensors. By creating a
dataset that addresses the current lack of publicly available data for
utilizing wearable devices and safe everyday stimuli to manage internal brain
states, our research enables further investigations into machine learning and
system identification. It eventually paves the way for smarter work
environments in the future. The ultimate goal is to develop practical and
automated personalized closed-loop systems that can effectively regulate
internal brain states and enhance the overall quality of life.
DOI: 10.5281/zenodo.10378578
title: Unique plant OTUs of mouflon and fallow deer diet on Æbelø

description: Raw Data of unique plant OTUs found in an eDNA metabarcoding analysis of mouflon and fallow deer diet on Æbelø in Denmark.
DOI: 10.25345/c53j39b7p
title: MassIVE MSV000093684 - Investigating the Impacts of Sphingomyelinases on Extracellular Vesicle Cargo Sorting
title: The biogenesis of extracellular vesicles (EVs) is a regulated process, driven by mechanisms at specific subcellular milieus. Sphingomyelinases (SMases), which metabolize sphingomyelin in membranes, play a role in EV biogenesis. Their metabolic product, ceramide, induces invaginations at the endosome or blebbing from the plasma membrane, both important in EV generation. Here, we sought to evaluate the impact of SMase inhibition on EV protein and RNA cargoes. For this, we treated human MCF7 cells with the neutral SMase (NSM) inhibitor GW4869 or the acid SMase (ASM) inhibitor FTY720. EVs were then purified from the conditioned media of control or inhibitor-treated cells and characterized by a variety of approaches, including LC-MS/MS and RNA-sequencing. SMase inhibition resulted in morphological and phenotypic changes in the heterogeneous EV population. Strikingly, NSM inhibition resulted in a depletion of nanoparticles, as well as a decrease in the RNA and protein content of EVs, with a marked reduction in endosomal, spliceosomal, and translation-related proteins. Furthermore, we observed a reduction in the overall RNA-binding proteins (RBPs) in EVs released by cells treated with the NSM-inhibitor. In contrast, the ASM-inhibitor treatment, which appears to reduce plasma membrane-derived vesicles, elicited an inverse response, leading to an increase in RBP and associated machineries within the released EV population. RNA sequencing of these EV revealed changes in the RNA biotypes composition, with an increase in protein coding transcripts. Interestingly, ASM-inhibitor resulting EVs induced increased cell migration and protein translation in recipient MCF10A cells. These results suggest that SMase-dependent vesiculation represents a major route of RBP and RNA trafficking outside the cell, via endosomal pathways.
DOI: 10.5281/zenodo.10403293
title: Data for "Examining outer band supercell environments in landfalling tropical cyclones using ground-based radar analyses"

description: The data here are archived for open data access for the publication entitled "Examining outer band supercell environments in landfalling tropical cyclones using ground-based radar analyses" submitted to Monthly Weather Review.

Radar data are archived in netCDF format in which variables are identified by their radar moment. The radar data are separated by SR1 and KLCH.

The csv archive contains the track information for objectively identified supercell storms from the manuscript.

Questions about the data may be directed to addison.alford@noaa.gov
DOI: 10.5281/zenodo.8011288
title: Data for "Examining outer band supercell environments in three landfalling tropical cyclones using ground-based radar analyses"

description: The data here are archived for open data access for the publication entitled "Examining outer band supercell environments in three landfalling tropical cyclones using ground-based radar analyses" submitted to <em>Monthly Weather Review</em>. Radar data are archived in netCDF format in which variables are identified by their radar moment. The radar data in Irma are separated by radar (sr2.tar.gz and tmia.tar.gz), which correspond to SMART Radar 2 and the TMIA radars. Likewise for Laura, data are separated by SR1 and KLCH. The csv .tar.gz archive contains the track information for objectively identified supercell storms from the manuscript. Questions about the data may be directed to addison.alford@noaa.gov
DOI: 10.7274/24857835.v1
title: ISQ Tables

description: Avey/Desch 2014 ISQ article
DOI: 10.7274/24857835
title: ISQ Tables

description: Avey/Desch 2014 ISQ article
DOI: 10.5281/zenodo.10398343
title: VCF file of whole genome sequencing data of 163 rats mapped jointly to mRatBN7.2

description: We analyzed whole genome sequencing data of 163 rats. These data were first mapped to mRatBN7.2, followed by variant calling using deepvariant and joint analysis using GLNexus. Sites that are likely called due to base-level errors in mRatBN7.2 are removed.
DOI: 10.5281/zenodo.10398344
title: VCF file of whole genome sequencing data of 163 rats mapped jointly to mRatBN7.2

description: We analyzed whole genome sequencing data of 163 rats. These data were first mapped to mRatBN7.2, followed by variant calling using deepvariant and joint analysis using GLNexus. Sites that are likely called due to base-level errors in mRatBN7.2 are removed.
DOI: 10.23641/asha.24640200
title: Substitution errors and speech sound complexity (Sieg et al., 2023)

description: This presentation video is from the Research Symposium at the 2022 Annual Convention of the American Speech-Language-Hearing Association held in New Orleans, LA.The abstract for the accompanying article is below. This article is part of the <i>JSLHR</i> Forum: Research Symposium on Bilingualism.<b>Purpose: </b>The purpose of this study was to (a) provide evidence for a theoretical model of between-language interaction in bilingual phonological production through the examination of substitution error patterns and to (b) provide developmental data on bilingual children with and without speech sound impairments for use in clinical assessment and diagnosis. Through the lens of markedness, or relative featural complexity, patterns of between-language interaction were observed to provide a foundation for clinical decision making in phonological assessment.<b>Method:</b> Seventy children, ages 3;11–6;7 (years; months), participated in this study: 63 typically developing bilingual Spanish-English–speaking children (x̄ = 5;2) and seven bilingual Spanish-English–speaking children with speech sound impairments (x̄ = 4;6). Substitution errors in single-word speech samples were analyzed in relation to their language-specific markedness values in terms of both targets avoided and substitutes produced. Both quantitative and descriptive analyses of substitution errors were performed.<b>Results:</b> Bilingual children, regardless of disability status, abided by the phonological rules of their languages in English and Spanish productions. Findings indicated both typically developing children and children with speech sound impairments preferred the use of unmarked sounds that are shared across languages over the use of marked, language-specific sounds.<b>Conclusions:</b> Through the examination of substitution errors, evidence of between-language interaction and recognition of relative complexity emerged. These results have implications for clinical assessment and diagnosis of speech sound impairments in bilingual children.<b>Supplemental Material S1.</b> English substitution errors.<b>Supplemental Material S2.</b> Spanish substitution errors.Sieg, S. R., Fabiano, L., & Barlow, J. (2023). Substitution errors and the role of markedness in bilingual phonological acquisition. <i>Journal of Speech, Language, and Hearing Research</i>, <i>66</i>(12), 4699–4715. https://doi.org/10.1044/2023_JSLHR-23-00116<b>Publisher Note:</b> This article is part of the Forum: Research Symposium on Bilingualism.
DOI: 10.23641/asha.24640200.v2
title: Substitution errors and speech sound complexity (Sieg et al., 2023)

description: This presentation video is from the Research Symposium at the 2022 Annual Convention of the American Speech-Language-Hearing Association held in New Orleans, LA.The abstract for the accompanying article is below. This article is part of the <i>JSLHR</i> Forum: Research Symposium on Bilingualism.<b>Purpose: </b>The purpose of this study was to (a) provide evidence for a theoretical model of between-language interaction in bilingual phonological production through the examination of substitution error patterns and to (b) provide developmental data on bilingual children with and without speech sound impairments for use in clinical assessment and diagnosis. Through the lens of markedness, or relative featural complexity, patterns of between-language interaction were observed to provide a foundation for clinical decision making in phonological assessment.<b>Method:</b> Seventy children, ages 3;11–6;7 (years; months), participated in this study: 63 typically developing bilingual Spanish-English–speaking children (x̄ = 5;2) and seven bilingual Spanish-English–speaking children with speech sound impairments (x̄ = 4;6). Substitution errors in single-word speech samples were analyzed in relation to their language-specific markedness values in terms of both targets avoided and substitutes produced. Both quantitative and descriptive analyses of substitution errors were performed.<b>Results:</b> Bilingual children, regardless of disability status, abided by the phonological rules of their languages in English and Spanish productions. Findings indicated both typically developing children and children with speech sound impairments preferred the use of unmarked sounds that are shared across languages over the use of marked, language-specific sounds.<b>Conclusions:</b> Through the examination of substitution errors, evidence of between-language interaction and recognition of relative complexity emerged. These results have implications for clinical assessment and diagnosis of speech sound impairments in bilingual children.<b>Supplemental Material S1.</b> English substitution errors.<b>Supplemental Material S2.</b> Spanish substitution errors.Sieg, S. R., Fabiano, L., & Barlow, J. (2023). Substitution errors and the role of markedness in bilingual phonological acquisition. <i>Journal of Speech, Language, and Hearing Research</i>, <i>66</i>(12), 4699–4715. https://doi.org/10.1044/2023_JSLHR-23-00116<b>Publisher Note:</b> This article is part of the Forum: Research Symposium on Bilingualism.
DOI: 10.23641/asha.24640200.v1
title: Substitution errors and speech sound complexity (Sieg et al., 2023)

description: This presentation video is from the Research Symposium at the 2022 Annual Convention of the American Speech-Language-Hearing Association held in New Orleans, LA.The abstract for the accompanying article is below. This article is part of the <i>JSLHR</i> Forum: Research Symposium on Bilingualism.<b>Purpose: </b>The purpose of this study was to (a) provide evidence for a theoretical model of between-language interaction in bilingual phonological production through the examination of substitution error patterns and to (b) provide developmental data on bilingual children with and without speech sound impairments for use in clinical assessment and diagnosis. Through the lens of markedness, or relative featural complexity, patterns of between-language interaction were observed to provide a foundation for clinical decision making in phonological assessment.<b>Method:</b> Seventy children, ages 3;11–6;7 (years; months), participated in this study: 63 typically developing bilingual Spanish-English–speaking children (x̄ = 5;2) and seven bilingual Spanish-English–speaking children with speech sound impairments (x̄ = 4;6). Substitution errors in single-word speech samples were analyzed in relation to their language-specific markedness values in terms of both targets avoided and substitutes produced. Both quantitative and descriptive analyses of substitution errors were performed.<b>Results:</b> Bilingual children, regardless of disability status, abided by the phonological rules of their languages in English and Spanish productions. Findings indicated both typically developing children and children with speech sound impairments preferred the use of unmarked sounds that are shared across languages over the use of marked, language-specific sounds.<b>Conclusions:</b> Through the examination of substitution errors, evidence of between-language interaction and recognition of relative complexity emerged. These results have implications for clinical assessment and diagnosis of speech sound impairments in bilingual children.<b>Supplemental Material S1.</b> English substitution errors.<b>Supplemental Material S2.</b> Spanish substitution errors.Sieg, S. R., Fabiano, L., & Barlow, J. (2023). Substitution errors and the role of markedness in bilingual phonological acquisition. <i>Journal of Speech, Language, and Hearing Research</i>. Advance online publication. https://doi.org/10.1044/2023_JSLHR-23-00116<b>Publisher Note:</b> This article is part of the Forum: Research Symposium on Bilingualism.
DOI: 10.6084/m9.figshare.24353034
title: New Estimands for Experiments with Strong Interference

description: In experiments that study social phenomena, such as peer influence or herd immunity, the treatment of one unit may influence the outcomes of others. Such “interference between units” violates traditional approaches for causal inference, so that additional assumptions are often imposed to model or limit the underlying social mechanism. For binary outcomes, we propose new estimands that can be estimated without such assumptions, allowing for interval estimates that assume only the randomization of treatment. However, the causal implications of these estimands are more limited than those attainable under stronger assumptions. The estimand shows whether the treatment effects under the observed assignment varied systematically as a function of each unit’s direct and indirect exposure to treatment, while also lower bounding the number of units affected. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.24353034.v2
title: New Estimands for Experiments with Strong Interference

description: In experiments that study social phenomena, such as peer influence or herd immunity, the treatment of one unit may influence the outcomes of others. Such “interference between units” violates traditional approaches for causal inference, so that additional assumptions are often imposed to model or limit the underlying social mechanism. For binary outcomes, we propose new estimands that can be estimated without such assumptions, allowing for interval estimates that assume only the randomization of treatment. However, the causal implications of these estimands are more limited than those attainable under stronger assumptions. The estimand shows whether the treatment effects under the observed assignment varied systematically as a function of each unit’s direct and indirect exposure to treatment, while also lower bounding the number of units affected. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.24353034.v1
title: New Estimands for Experiments with Strong Interference

description: In experiments that study social phenomena, such as peer influence or herd immunity, the treatment of one unit may influence the outcomes of others. Such “interference between units” violates traditional approaches for causal inference, so that additional assumptions are often imposed to model or limit the underlying social mechanism. For binary outcomes, we propose new estimands that can be estimated without such assumptions, allowing for interval estimates that assume only the randomization of treatment. However, the causal implications of these estimands are more limited than those attainable under stronger assumptions. The estimand shows whether the treatment effects under the observed assignment varied systematically as a function of each unit’s direct and indirect exposure to treatment, while also lower bounding the number of units affected. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.24857961
title: Automatic thermal control system for finishing swine in semi-arid conditions

description: Swine is the most consumed protein in the world, and Brazil stands out as an important producer and exporter of this product. The South and Southeast regions of Brazil lead this production, with the Northeast region, especially the Semi-arid region, having independent farming systems and low levels of technification. These factors, combined with a climate characterized by high temperatures and high levels of thermal radiation, result in low production rates for pig farming in the region. To contribute to improving the pig production chain in the northeast of Brazil, this work aimed to develop a simple prototype for controlling the thermal environment in pig finishing stalls. The controller was programmed to activate the micro-sprinkler and ventilation system, alternating between 2 minutes of micro-sprinkling and 18 minutes of ventilation. The system was validated using three treatments: 01 - control stall (without air conditioning); 02 - stall with a micro-sprinkler system; and 03 - stall with a micro-sprinkler and ventilation system. The environmental data used to verify the Temperature and Humidity Index (THI), the Black Globe Temperature and Humidity Index (BGHI) and the Enthalpy (H) of each of the treatments, and the physiological parameters of respiratory rate (RR), surface temperature (ST) and rectal temperature (RT) of the animals were also evaluated. The air temperature, H, BGHI, THI, and RR of the animals showed the best averages for the sprinkler treatment compared to the other treatments (p&lt;0.05). It can be concluded that the thermal controller's functionality has been proven and corresponds to the comparison made between it and certified equipment. Although the sprinkler treatment showed the best results, none of the other treatments were outside the conditions that provide high levels of thermal heat stress for these animals, and air-conditioned stalls can improve their thermal comfort levels, granting them animal welfare.