cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21550797.v1
title: Supplementary Material for: Development of Novel Tasks to Assess Outcome-Specific and General Pavlovian-to-Instrumental Transfer in Humans

description: <b><i>Introduction:</i></b> The emergence of Pavlovian-to-instrumental transfer (PIT) research in the human neurobehavioral domain has been met with increased interest over the past two decades. A variety of PIT tasks were developed during this time; while successful in demonstrating transfer phenomena, existing tasks have limitations that should be addressed. Herein, we introduce two PIT paradigms designed to assess outcome-specific and general PIT within the context of addiction. <b><i>Materials and Methods:</i></b> The single-lever PIT task, based on an established paradigm, replaced button presses with joystick motion to better assess avoidance behavior. The full transfer task uses alcohol and nonalcohol rewards associated with Pavlovian cues and instrumental responses, along with other gustatory and monetary rewards. We constructed mixed-effects models with the addition of other statistical analyses as needed to interpret various behavioral measures. <b><i>Results:</i></b> Single-lever PIT: both versions were successful in eliciting a PIT effect (joystick: <i>p</i> &lt; 0.001, η<sub>p</sub><sup>2</sup> = 0.36, button-box: <i>p</i> &lt; 0.001, η<sub>p</sub><sup>2</sup> = 0.30). Full transfer task: it was determined that the alcohol and nonalcoholic reward cues selectively primed their respective reward-associated responses (gustatory version: <i>p</i> &lt; 0.001, <i>r</i> = 0.59, and monetary version: <i>p</i> &lt; 0.001, <i>r</i> = 0.84). The appetitive/aversive cues resulted in a general transfer effect (gustatory: <i>p</i> &lt; 0.001, η<sub>p</sub><sup>2</sup> = 0.09, and monetary: <i>p</i> &lt; 0.001, η<sub>p</sub><sup>2</sup> = 0.17). <b><i>Discussion/Conclusion:</i></b> Single-lever PIT: PIT was observed in both task versions. We posit that the use of a joystick is more advantageous for the analysis of avoidance behavior. It evenly distributes movement between approach and avoid trials, which is relevant to analyzing fMRI data. Full transfer task: While gustatory conditioning has been used in the past to elicit transfer effects, we present the first paradigm that successfully elicits both specific and general transfers in humans with gustatory alcohol rewards.
DOI: 10.6084/m9.figshare.20937109
title: Supplementary Material for: MicroRNA-204-5p hampers the malignant progression of clear cell renal cell carcinoma through GXYLT2 down-regulation

description: Introduction: At present, the mortality rate of clear cell renal cell carcinoma (ccRCC) remains high. The development of biomarkers is conducive to the early diagnosis and treatment of cancer. This research aimed to explore the role of microRNA-204-5p and downstream gene in ccRCC. Methods: We used bioinformatics analysis and qRT-PCR for measurement of microRNA-204-5p, qRT-PCR and western blot for GXYLT2 mRNA and protein levels, respectively. We conducted in vitro experiments like CCK8, colony formation, transwell, wound healing, and cell cycle assays to assess the role of microRNA-204-5p and GXYLT2 in ccRCC. Besides, the target relationship of microRNA-204-5p and GXYLT2 was confirmed through dual-luciferase assay. Results: This study disclosed that microRNA-204-5p was underexpressed in ccRCC cells and tissues, which was closely associated with prognosis of patients with ccRCC. Stable forced expression of microRNA-204-5p hindered malignant phenotypes of ccRCC cells. Further detection unfolded that microRNA-204-5p bound the 3’-UTR of GXYLT2 to repress its expression. Besides, forced expression of microRNA-204-5p restored the promoting impact of overexpression of GXYLT2 on malignant progression of ccRCC cells. Conclusion: These findings revealed the vital role of microRNA-204-5p and GXYLT2 in ccRCC progression, as well as the possibility of microRNA-204-5p in improving ccRCC prognosis and treatment.
DOI: 10.6084/m9.figshare.20937109.v1
title: Supplementary Material for: MicroRNA-204-5p hampers the malignant progression of clear cell renal cell carcinoma through GXYLT2 down-regulation

description: Introduction: At present, the mortality rate of clear cell renal cell carcinoma (ccRCC) remains high. The development of biomarkers is conducive to the early diagnosis and treatment of cancer. This research aimed to explore the role of microRNA-204-5p and downstream gene in ccRCC. Methods: We used bioinformatics analysis and qRT-PCR for measurement of microRNA-204-5p, qRT-PCR and western blot for GXYLT2 mRNA and protein levels, respectively. We conducted in vitro experiments like CCK8, colony formation, transwell, wound healing, and cell cycle assays to assess the role of microRNA-204-5p and GXYLT2 in ccRCC. Besides, the target relationship of microRNA-204-5p and GXYLT2 was confirmed through dual-luciferase assay. Results: This study disclosed that microRNA-204-5p was underexpressed in ccRCC cells and tissues, which was closely associated with prognosis of patients with ccRCC. Stable forced expression of microRNA-204-5p hindered malignant phenotypes of ccRCC cells. Further detection unfolded that microRNA-204-5p bound the 3’-UTR of GXYLT2 to repress its expression. Besides, forced expression of microRNA-204-5p restored the promoting impact of overexpression of GXYLT2 on malignant progression of ccRCC cells. Conclusion: These findings revealed the vital role of microRNA-204-5p and GXYLT2 in ccRCC progression, as well as the possibility of microRNA-204-5p in improving ccRCC prognosis and treatment.
DOI: 10.6084/m9.figshare.21550968
title: Additional file 1 of Insights into adaptive evolution of plastomes in Stipa L. (Poaceae)

description: Additional file 1: Table S1.
DOI: 10.6084/m9.figshare.21550968.v1
title: Additional file 1 of Insights into adaptive evolution of plastomes in Stipa L. (Poaceae)

description: Additional file 1: Table S1.
DOI: 10.6084/m9.figshare.21550971
title: Additional file 2 of Insights into adaptive evolution of plastomes in Stipa L. (Poaceae)

description: Additional file 2: Table S2.
DOI: 10.6084/m9.figshare.21550971.v1
title: Additional file 2 of Insights into adaptive evolution of plastomes in Stipa L. (Poaceae)

description: Additional file 2: Table S2.
DOI: 10.6084/m9.figshare.21550974
title: Additional file 3 of Insights into adaptive evolution of plastomes in Stipa L. (Poaceae)

description: Additional file 3: Table S3.
DOI: 10.6084/m9.figshare.21550974.v1
title: Additional file 3 of Insights into adaptive evolution of plastomes in Stipa L. (Poaceae)

description: Additional file 3: Table S3.
DOI: 10.6084/m9.figshare.21550986
title: Additional file 2 of The impact of facility-based transitional care programs on function and discharge destination for older adults with cognitive impairment: a systematic review

description: Additional file 2. Registry Search Strategies, Results and the Dates the Registries were Last Searched.
DOI: 10.6084/m9.figshare.21550986.v1
title: Additional file 2 of The impact of facility-based transitional care programs on function and discharge destination for older adults with cognitive impairment: a systematic review

description: Additional file 2. Registry Search Strategies, Results and the Dates the Registries were Last Searched.
DOI: 10.6084/m9.figshare.21550992
title: Additional file 4 of The impact of facility-based transitional care programs on function and discharge destination for older adults with cognitive impairment: a systematic review

description: Additional file 4. Extracted Data.
DOI: 10.6084/m9.figshare.21550992.v1
title: Additional file 4 of The impact of facility-based transitional care programs on function and discharge destination for older adults with cognitive impairment: a systematic review

description: Additional file 4. Extracted Data.
DOI: 10.6084/m9.figshare.21551051
title: Additional file 2 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 2. Details of identified rG4 in each rG4-seq library.
DOI: 10.6084/m9.figshare.21551051.v1
title: Additional file 2 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 2. Details of identified rG4 in each rG4-seq library.
DOI: 10.6084/m9.figshare.21551054
title: Additional file 3 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 3. The list of union rG4s across rG4-seq 2.0 libraries.
DOI: 10.6084/m9.figshare.21551054.v1
title: Additional file 3 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 3. The list of union rG4s across rG4-seq 2.0 libraries.
DOI: 10.6084/m9.figshare.21551057
title: Additional file 4 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 4. The list of consensus rG4s across rG4-seq 2.0 libraries.
DOI: 10.6084/m9.figshare.21551057.v1
title: Additional file 4 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 4. The list of consensus rG4s across rG4-seq 2.0 libraries.
DOI: 10.6084/m9.figshare.21551060
title: Additional file 5 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 5. The list of union rG4s across rG4-seq 2.0 and 1.0 libraries.
DOI: 10.6084/m9.figshare.21551060.v1
title: Additional file 5 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 5. The list of union rG4s across rG4-seq 2.0 and 1.0 libraries.
DOI: 10.6084/m9.figshare.21551063
title: Additional file 6 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 6. The list of consensus rG4s across rG4-seq 2.0 and 1.0 libraries.
DOI: 10.6084/m9.figshare.21551063.v1
title: Additional file 6 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 6. The list of consensus rG4s across rG4-seq 2.0 and 1.0 libraries.
DOI: 10.6084/m9.figshare.21551066
title: Additional file 7 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 7. The commands and configurations of the respective tools used in the bioinformatic analysis.
DOI: 10.6084/m9.figshare.21551069
title: Additional file 8 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 8. Raw data of Figures.
DOI: 10.6084/m9.figshare.21551069.v1
title: Additional file 8 of Enhanced transcriptome-wide RNA G-quadruplex sequencing for low RNA input samples with rG4-seq 2.0

description: Additional file 8. Raw data of Figures.
DOI: 10.5281/zenodo.7198321
title: Deijns et al. NHESS -SAR Timing- GH Event Inventories

description: These shapefiles contain four geomorphic hazard (GH) events with a total of around 2500 manually mapped landslides and flash floods. These four GH events are located in the southern part of the Rwenzori Mountains (Uganda), the Karongi district (Rwanda), the hills of Nyempundu in the Cibitoke region (Burundi) and west of the city of Uvira (Democratic Republic of the Congo). This inventory is used in the paper: "Timing landslide and flash flood events from SAR satellite: a regionally applicable methodology illustrated in African cloud-covered tropical environments " published in Natural Hazards and Earth System Sciences. When using the dataset, you should refer to this work. This research has been supported by the Belgian Federal Science Policy Office through two grants (grant nos. BR/165/A3/PASTECA and B2/223/P1/GEOTROP).
DOI: 10.6084/m9.figshare.21551130
title: Additional file 1 of In vivo measurement of three-dimensional load exerted on dental implants: a literature review

description: Additional file 1: Table S1. Studies not included (n=125) in the review after full text reading and reason for exclusion.
DOI: 10.6084/m9.figshare.21551130.v1
title: Additional file 1 of In vivo measurement of three-dimensional load exerted on dental implants: a literature review

description: Additional file 1: Table S1. Studies not included (n=125) in the review after full text reading and reason for exclusion.
DOI: 10.5281/zenodo.7313963
title: A LCT Pegmatite Spectral Library of the Aldeia spodumene deposit: contributes to mineral exploration

description: Studies focused on methodologies for locating and prospecting Li-Cs-Ta (LCT) pegmatites are increasingly relevant, given their importance for the energy market in a scenario where new sources need to be identified. Considering the inherent costs of field campaigns to identify targets <em>in situ</em>, this study presents alternatives, focusing on a preliminary evaluation of the spectral signature of targets at a specific site to serve as an added value for future exploration studies. Moreover, such spectral and remote sensing-based approaches help to decrease the impacts of early stages of exploration due to their less invasive nature. Therefore, we present a spectral library built with empirical data available for public use, focusing on Lithium minerals and pegmatites of the Barroso pegmatite field (Portugal), one of the largest hard-rock European Lithium deposits, built within the scope of the INOVMINERAL4.0 project (https://inovmineral.pt/).
description: The authors acknowledge the support provided by Portuguese National Funds through the FCT – Fundação para a Ciência e a Tecnologia, I.P. (Portugal) projects UIDB/04683/2020 and UIDP/04683/2020 (Institute of Earth Sciences); through ANI and COMPETE 2020 as well as European funds through the European Regional Development Fund (ERDF) with POCI-01-0247-FEDER-046083 INOVMINERAL project. The authors also thank Savannah Resources PLC for access to the Aldeia pegmatite and for providing the samples used in this study.
DOI: 10.5281/zenodo.7313964
title: A LCT Pegmatite Spectral Library of the Aldeia spodumene deposit: contributes to mineral exploration

description: Studies focused on methodologies for locating and prospecting Li-Cs-Ta (LCT) pegmatites are increasingly relevant, given their importance for the energy market in a scenario where new sources need to be identified. Considering the inherent costs of field campaigns to identify targets <em>in situ</em>, this study presents alternatives, focusing on a preliminary evaluation of the spectral signature of targets at a specific site to serve as an added value for future exploration studies. Moreover, such spectral and remote sensing-based approaches help to decrease the impacts of early stages of exploration due to their less invasive nature. Therefore, we present a spectral library built with empirical data available for public use, focusing on Lithium minerals and pegmatites of the Barroso pegmatite field (Portugal), one of the largest hard-rock European Lithium deposits, built within the scope of the INOVMINERAL4.0 project (https://inovmineral.pt/).
description: The authors acknowledge the support provided by Portuguese National Funds through the FCT – Fundação para a Ciência e a Tecnologia, I.P. (Portugal) projects UIDB/04683/2020 and UIDP/04683/2020 (Institute of Earth Sciences); through ANI and COMPETE 2020 as well as European funds through the European Regional Development Fund (ERDF) with POCI-01-0247-FEDER-046083 INOVMINERAL project. The authors also thank Savannah Resources PLC for access to the Aldeia pegmatite and for providing the samples used in this study.
DOI: 10.5281/zenodo.7318444
title: A LCT Pegmatite Spectral Library of the Aldeia spodumene deposit: contributes to mineral exploration

description: Studies focused on methodologies for locating and prospecting Li-Cs-Ta (LCT) pegmatites are increasingly relevant, given their importance for the energy market in a scenario where new sources need to be identified. Considering the inherent costs of field campaigns to identify targets <em>in situ</em>, this study presents alternatives, focusing on a preliminary evaluation of the spectral signature of targets at a specific site to serve as an added value for future exploration studies. Moreover, such spectral and remote sensing-based approaches help to decrease the impacts of early stages of exploration due to their less invasive nature. Therefore, we present a spectral library built with empirical data available for public use, focusing on Lithium minerals and pegmatites of the Barroso pegmatite field (Portugal), one of the largest hard-rock European Lithium deposits, built within the scope of the INOVMINERAL4.0 project (https://inovmineral.pt/).
description: The authors acknowledge the support provided by Portuguese National Funds through the FCT – Fundação para a Ciência e a Tecnologia, I.P. (Portugal) projects UIDB/04683/2020 and UIDP/04683/2020 (Institute of Earth Sciences); through ANI and COMPETE 2020 as well as European funds through the European Regional Development Fund (ERDF) with POCI-01-0247-FEDER-046083 INOVMINERAL project. The authors also thank Savannah Resources PLC for access to the Aldeia pegmatite and for providing the samples used in this study.
DOI: 10.18112/openneuro.ds004158.v1.0.3
title: rest_eye
DOI: 10.57745/8mclgc
title: clematis-stans_bestProt.pep.gz

description: predicted protein set of Clematis stans
DOI: 10.57745/rhpbio
title: Ficaria-vernia.fasta.gz

description: predicted transcript set of Ficaria verna
DOI: 10.57745/zps2zi
title: helleborus-orientalis_bestProt.pep.gz

description: predicted protein set of Helleborus orientalis
DOI: 10.57745/lqnpi0
title: Aconitum-napellus.fasta.gz

description: predicted transcript set of Aconitum napellus
DOI: 10.57745/cyd6k0
title: aconitum-napellus_bestProt.pep.gz

description: predicted protein set of Aconitum napellus
DOI: 10.57745/qw9c2v
title: ficaria-verna_bestProt.pep.gz

description: predicted protein set of Ficaria verna
DOI: 10.57745/h7wt1i
title: Clematis-stans.fasta.gz

description: predicted transcript set of Clematis stans
DOI: 10.57745/yykr3g
title: Project-analyses.odt

description: detail of the associated bio-informatic analyses
DOI: 10.57745/iwd5yb
title: Helleborus-orientalis.fasta.gz

description: predicted transcript set of Helleborus stans
DOI: 10.57745/fumqzx
title: sampleSpecies-rawdata.txt

description: name of the raw sequencing files associated to each assembly
DOI: 10.5281/zenodo.6418164
title: ICE-LAPSE image dataset

description: ######################################################## Image dataset acquired within the project "ICE-LAPSE: Analysis of Antarctic benthos dynamics by using non-destructive monitoring devices and permanent stations'', PNRA 2013/AZ1.16, funded by the Italian National Antarctic Program. The dataset is in support of the publication entitled: Long-term Automated Visual Monitoring of Antarctic Benthic Fauna Simone Marini 1,2∗ , Federico Bonofiglio 1 , Lorenzo P. Corgnati 1 ,<br> Andrea Bordone 3, Stefano Schiaparelli 4 , Andrea Peirano 3 1 National Research Council of Italy (CNR), Institute of Marine Sciences, La Spezia, 19132, Italy,<br> 2 Stazione Zoologica Anton Dohrn, Naples, 80121, Italy<br> 3 ENEA-Marine Environment Research Centre, La Spezia, 19132, Italy<br> 4 DISTAV, Università di Genova, Genova, 16132, Italy ∗E-mail: simone.marini@sp.ismar.cnr.it. Under review on Methods in Ecology and Evolution (https://besjournals.onlinelibrary.wiley.com/journal/2041210x) <br> ######################################################## The dataset consists of four .tgz archives, structured as in the following: - Raw_Images contains the images in CR2 format<br> - JPG_Images contains the images in JPG format<br> - 640x427_Images contains the images in JPG format, with resolution 640x427 Pixels<br> - ICE-LAPSE_tags contains<br> - the textual_Tags folder,<br> - the Tagged_Images folder,<br> - the SpeciesColorLabel image representing the legend for the tagged images contained in the Tagged_Images folder<br> - the SpeciesDistribution.csv spreadsheet listing the species for each image
DOI: 10.5281/zenodo.6634390
title: ICE-LAPSE image dataset

description: ######################################################## Image dataset acquired within the project "ICE-LAPSE: Analysis of Antarctic benthos dynamics by using non-destructive monitoring devices and permanent stations'', PNRA 2013/AZ1.16, funded by the Italian National Antarctic Program. The dataset is in support of the publication entitled: Long-term Automated Visual Monitoring of Antarctic Benthic Fauna Simone Marini 1,2∗ , Federico Bonofiglio 1 , Lorenzo P. Corgnati 1 ,<br> Andrea Bordone 3, Stefano Schiaparelli 4 , Andrea Peirano 3 1 National Research Council of Italy (CNR), Institute of Marine Sciences, La Spezia, 19132, Italy,<br> 2 Stazione Zoologica Anton Dohrn, Naples, 80121, Italy<br> 3 ENEA-Marine Environment Research Centre, La Spezia, 19132, Italy<br> 4 DISTAV, Università di Genova, Genova, 16132, Italy ∗E-mail: simone.marini@sp.ismar.cnr.it. HOW TO CITE: Marini, S., Bonofiglio, F., Corgnati, L. P., Bordone, A., Schiaparelli, S., & Peirano, A. (2022). Long-term automated visual monitoring of Antarctic benthic fauna. <em>Methods in Ecology and Evolution</em>, 00, 1– 19. https://doi.org/10.1111/2041-210X.13898 ######################################################## The dataset consists of four .tgz archives, structured as in the following: - Raw_Images contains the images in CR2 format<br> - JPG_Images contains the images in JPG format<br> - 640x427_Images contains the images in JPG format, with resolution 640x427 Pixels<br> - ICE-LAPSE_Tags contains<br> - the textual_Tags folder,<br> - the Tagged_Images folder,<br> - the SpeciesColorLabel image representing the legend for the tagged images contained in the Tagged_Images folder<br> - the SpeciesDistribution.csv spreadsheet listing the species for each image
DOI: 10.5281/zenodo.6638429
title: ICE-LAPSE image dataset

description: ######################################################## Image dataset acquired within the project "ICE-LAPSE: Analysis of Antarctic benthos dynamics by using non-destructive monitoring devices and permanent stations'', PNRA 2013/AZ1.16, funded by the Italian National Antarctic Program. The dataset is in support of the publication entitled: Long-term Automated Visual Monitoring of Antarctic Benthic Fauna Simone Marini 1,2∗ , Federico Bonofiglio 1 , Lorenzo P. Corgnati 1 ,<br> Andrea Bordone 3, Stefano Schiaparelli 4 , Andrea Peirano 3 1 National Research Council of Italy (CNR), Institute of Marine Sciences, La Spezia, 19132, Italy,<br> 2 Stazione Zoologica Anton Dohrn, Naples, 80121, Italy<br> 3 ENEA-Marine Environment Research Centre, La Spezia, 19132, Italy<br> 4 DISTAV, Università di Genova, Genova, 16132, Italy ∗E-mail: simone.marini@sp.ismar.cnr.it. HOW TO CITE: Marini, S., Bonofiglio, F., Corgnati, L. P., Bordone, A., Schiaparelli, S., & Peirano, A. (2022). Long-term automated visual monitoring of Antarctic benthic fauna. <em>Methods in Ecology and Evolution</em>, 00, 1– 19. https://doi.org/10.1111/2041-210X.13898 ######################################################## The dataset consists of four .tgz archives, structured as in the following: - Raw_Images contains the images in CR2 format<br> - JPG_Images contains the images in JPG format<br> - 640x427_Images contains the images in JPG format, with resolution 640x427 Pixels<br> - ICE-LAPSE_Tags contains<br> - the textual_Tags folder,<br> - the Tagged_Images folder,<br> - the SpeciesColorLabel image representing the legend for the tagged images contained in the Tagged_Images folder<br> - the SpeciesDistribution.csv spreadsheet listing the species for each image