cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8866874.v1
title: MOESM3 of What evidence exists on the effectiveness of the techniques and management approaches used to improve the productivity of field grown tomatoes under conditions of water-, nitrogen- and/or phosphorus-deficit? A systematic map protocol

description: Additional file 3. Scoping search terms and search string. This spreadsheet contains the different steps during the scoping study for identifying most suitable search terms and strings. The different sheets include the results from word frequency analysis with CREBP online tool, exploration of best-fit-for-purpose search terms and strings, results from the â test-listâ library checks and final strings.
DOI: 10.6084/m9.figshare.8866847
title: MOESM2 of Transcriptional responses of Leishmania (Leishmania) amazonensis in the presence of trivalent sodium stibogluconate

description: Additional file 2: Table S1. List of differentially expressed genes between La-SbIII-S and La-SbIII-R lines with a fold-change ≥ 2.
DOI: 10.6084/m9.figshare.8866847.v1
title: MOESM2 of Transcriptional responses of Leishmania (Leishmania) amazonensis in the presence of trivalent sodium stibogluconate

description: Additional file 2: Table S1. List of differentially expressed genes between La-SbIII-S and La-SbIII-R lines with a fold-change ≥ 2.
DOI: 10.6084/m9.figshare.8866826
title: Additional file 9: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Table S5. Selected DEGs involved in hormones pathway under 1-MCP treatments. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.8866826.v1
title: Additional file 9: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Table S5. Selected DEGs involved in hormones pathway under 1-MCP treatments. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.8866823
title: Additional file 8: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Table S4. Selected DEGs involved in cell wall metabolism pathway. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.8866817
title: Additional file 7: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Table S3. Selected DEGs involved in hormone signal pathway during fruit ripening. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8866814
title: Additional file 6: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Table S2.. Summary of the sequencing reads and their matches in the papaya genome. (XLS 27 kb)
DOI: 10.6084/m9.figshare.8866823.v1
title: Additional file 8: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Table S4. Selected DEGs involved in cell wall metabolism pathway. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.8866814.v1
title: Additional file 6: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Table S2.. Summary of the sequencing reads and their matches in the papaya genome. (XLS 27 kb)
DOI: 10.6084/m9.figshare.8866817.v1
title: Additional file 7: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Table S3. Selected DEGs involved in hormone signal pathway during fruit ripening. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8866811
title: Additional file 5: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Table S1. Primer sequences used in present study. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8866811.v1
title: Additional file 5: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Table S1. Primer sequences used in present study. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8866778
title: Additional file 12: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Data S3. DEGs during fruit ripening enriched in cell wall metabolism term and pathways. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.8866778.v1
title: Additional file 12: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Data S3. DEGs during fruit ripening enriched in cell wall metabolism term and pathways. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.8866772
title: Additional file 11: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Data S2. KEGG classification of DEG during fruit ripening. (XLS 96 kb)
DOI: 10.6084/m9.figshare.8866772.v1
title: Additional file 11: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Data S2. KEGG classification of DEG during fruit ripening. (XLS 96 kb)
DOI: 10.6084/m9.figshare.8866763
title: Additional file 10: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Data S1. Functional annotation and identification of unigenes by blast in different databases. (XLS 16696 kb)
DOI: 10.6084/m9.figshare.8866763.v1
title: Additional file 10: of Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya

description: Data S1. Functional annotation and identification of unigenes by blast in different databases. (XLS 16696 kb)
DOI: 10.6084/m9.figshare.8866646
title: Additional file 6: of Alternative polyadenylation produces multiple 3â untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Table S3. Optional introns detected in the Olfr 3â UTRs annotated with our IsoSCM workflow (male_IS2014 dataset). For each Olfr concerned: # chromosome, intron boundaries (Start/End), Gene name. (XLSX 14 kb)
DOI: 10.3886/e119446v24
title: COVID-19 US State Policy Database

description: Database of state policies on closures, shelter-in-place orders, housing protections, changes to Medicaid and SNAP, physical distancing closures, reopening, and more created by researchers at the Boston University School of Public Health. Policies included are state-wide directives or mandates, not guidance or recommendations. In order for a policy to be included, it must apply to the entire state. We are working quickly to go through state government websites to make the policy database as complete and accurate as possible in a rapidly changing policy context. If you use data on a given policy, we encourage you to triangulate based on additional sources of policy data and to review the source documentation to consider the coding decisions that are right for your work. Of course, please email us if you note a discrepancy so we can improve the database for everyone. State policy source documentation can be found at: tinyurl.com/statepolicysources.
description: other; Contributors: Megan Cole Brahim, Noa Krawczyk, Carolyn Hoffman, Claire Corkish, Elizabeth Ferrara, Elizabeth Long, Emily Baroni, Faith Contador, Hannah Simon, Morgan Simko, Rachel Scheckman, Sarah Brewer, Sue Kulkarni, Felicia Heykoop, Manish Patel, Aishwarya Vidyasagaran, Andrew Chiao, Cara Safon, Samantha Burkhart, Harry Jung, Victor Lee, Marina MacKinnon, Aarohi Rede, Marie Vearling, Sophie Li, Christina Wang, Tim Levengood, María Jordán P. Emma Chistolini
description: State policies. Smallest Geographic Unit: State
DOI: 10.6084/m9.figshare.8866646.v1
title: Additional file 6: of Alternative polyadenylation produces multiple 3â untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Table S3. Optional introns detected in the Olfr 3â UTRs annotated with our IsoSCM workflow (male_IS2014 dataset). For each Olfr concerned: # chromosome, intron boundaries (Start/End), Gene name. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8866631
title: Additional file 3: of Alternative polyadenylation produces multiple 3’ untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Table S2. Alternative 3′ ends for Olfr genes annotated from the 4 datasets. The 3′ end positions and the relative abundances of the resulting 3’UTR isoforms were obtained using our IsoSCM workflow. For each individual dataset: Gene name, Length of the minimal CDS (covered by reads), Counts in the minimal CDS, Number of 3’UTR isoforms; for each utr (utr1-utr5): length and relative abundance (%RA); quantitative 3’UTR isoform profile (see Fig. 4 for the definition of the profiles). Additional column for the male_IS2014 dataset: pUTR vs. dUTR1 abundance flag (RA_utr1 &gt; RA_utr2). Additional columns for comparisons: Very short flag (length
DOI: 10.6084/m9.figshare.8866622
title: Additional file 1: of Alternative polyadenylation produces multiple 3’ untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Table S1. Olfr genomic regions included in the mask. An Olfr genomic region is defined by one Olfr CDS (isolated) or multiple consecutive Olfr CDSs bounded by an upstream and a downstream nonOlfr CDSs. Olfactory genomic region line (orange): # region, Number of Olfr genes (with a CDS), # chromosome, Upstream boundary (end of the upstream non-Olfr CDS), Downstream boundary (beginning of the downstream non-Olfr CDS), Region length (nt), Gene density (number of Olfr CDS divided by region length). Gene line: non-Olfr/Olfr flag, # chromosome, CDS upstream end, CDS downstream end, Gene name, Gene orientation, CDS length (nt). Comments: Isolated genes are indicated; As Olfr161 is the first gene on Chr16, the upstream boundary of the Olfr161 genomic region was arbitrarily established 25 kb upstream of the Olfr161 CDS. (XLSX 176 kb)
DOI: 10.6084/m9.figshare.8866631.v1
title: Additional file 3: of Alternative polyadenylation produces multiple 3’ untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Table S2. Alternative 3′ ends for Olfr genes annotated from the 4 datasets. The 3′ end positions and the relative abundances of the resulting 3’UTR isoforms were obtained using our IsoSCM workflow. For each individual dataset: Gene name, Length of the minimal CDS (covered by reads), Counts in the minimal CDS, Number of 3’UTR isoforms; for each utr (utr1-utr5): length and relative abundance (%RA); quantitative 3’UTR isoform profile (see Fig. 4 for the definition of the profiles). Additional column for the male_IS2014 dataset: pUTR vs. dUTR1 abundance flag (RA_utr1 &gt; RA_utr2). Additional columns for comparisons: Very short flag (length
DOI: 10.6084/m9.figshare.8866622.v1
title: Additional file 1: of Alternative polyadenylation produces multiple 3’ untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Table S1. Olfr genomic regions included in the mask. An Olfr genomic region is defined by one Olfr CDS (isolated) or multiple consecutive Olfr CDSs bounded by an upstream and a downstream nonOlfr CDSs. Olfactory genomic region line (orange): # region, Number of Olfr genes (with a CDS), # chromosome, Upstream boundary (end of the upstream non-Olfr CDS), Downstream boundary (beginning of the downstream non-Olfr CDS), Region length (nt), Gene density (number of Olfr CDS divided by region length). Gene line: non-Olfr/Olfr flag, # chromosome, CDS upstream end, CDS downstream end, Gene name, Gene orientation, CDS length (nt). Comments: Isolated genes are indicated; As Olfr161 is the first gene on Chr16, the upstream boundary of the Olfr161 genomic region was arbitrarily established 25 kb upstream of the Olfr161 CDS. (XLSX 176 kb)
DOI: 10.6084/m9.figshare.8866610
title: Additional file 14: of Alternative polyadenylation produces multiple 3â untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Annotations for Olfr genes using our IsoSCM pipeline on the female_IS2017 dataset. (GTF 1757 kb)
DOI: 10.6084/m9.figshare.8866610.v1
title: Additional file 14: of Alternative polyadenylation produces multiple 3â untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Annotations for Olfr genes using our IsoSCM pipeline on the female_IS2017 dataset. (GTF 1757 kb)
DOI: 10.6084/m9.figshare.8866601
title: Additional file 13: of Alternative polyadenylation produces multiple 3â untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Annotations for Olfr genes using our IsoSCM pipeline on the male_IS2017 dataset. (GTF 2198 kb)
DOI: 10.6084/m9.figshare.8866604
title: Additional file 1: of Transcriptional characterisation of the Exaiptasia pallida pedal disc

description: Bioinformatic analyses additional data. (XLSX 195 kb)
DOI: 10.6084/m9.figshare.8866601.v1
title: Additional file 13: of Alternative polyadenylation produces multiple 3â untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Annotations for Olfr genes using our IsoSCM pipeline on the male_IS2017 dataset. (GTF 2198 kb)
DOI: 10.6084/m9.figshare.8866604.v1
title: Additional file 1: of Transcriptional characterisation of the Exaiptasia pallida pedal disc

description: Bioinformatic analyses additional data. (XLSX 195 kb)
DOI: 10.6084/m9.figshare.8866589
title: Additional file 11: of Alternative polyadenylation produces multiple 3â untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Annotations for Olfr genes using our IsoSCM pipeline on the male_IS2014 dataset. (GTF 1625 kb)
DOI: 10.6084/m9.figshare.8866595
title: Additional file 12: of Alternative polyadenylation produces multiple 3â untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Annotations for Olfr genes using our IsoSCM pipeline on the female_IS2014 dataset. (GTF 1294 kb)
DOI: 10.6084/m9.figshare.8866589.v1
title: Additional file 11: of Alternative polyadenylation produces multiple 3â untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Annotations for Olfr genes using our IsoSCM pipeline on the male_IS2014 dataset. (GTF 1625 kb)
DOI: 10.6084/m9.figshare.8866595.v1
title: Additional file 12: of Alternative polyadenylation produces multiple 3â untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Annotations for Olfr genes using our IsoSCM pipeline on the female_IS2014 dataset. (GTF 1294 kb)
DOI: 10.6084/m9.figshare.8866583
title: Additional file 10: of Alternative polyadenylation produces multiple 3’ untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Table S4. Alternative 3′ ends for pilot genes annotated from RNA-Seq data and RL-PAT experimental validation. The 3′ end positions and the relative abundances of the resulting 3’UTR isoforms were obtained using our IsoSCM workflow to process the 4 datasets from adult OM. The 3′ ends distant of less than 100 nt were merged as a single polyA sitea. For each putative polyA site, predicted canonical PASs matching in a [− 100;+ 100] window from the RNA-Seq-deduced 3′ end are indicatedb. Note that for Olfr1507 3’XL isoform, the closest canonical PAS is slightly outside the 100-nt precision windowc. The cleavage site and polyA tail length were experimentally mapped using RL-PAT on adult male OM, further confirming the polyA site usage for most of the 3’UTR isoforms. XL site of Olfr1507, M1 and L sites of Olfr15 were not confirmed by RL-PAT since no specific forward primer could be designed due to repeated sequences upstream of these polyA sitesd. For each confirmed polyA site, predicted canonical PASs, or variant hexamers when necessary, matching in a [− 100;0] window from the identified cleavage sites are indicatede. ND: not detected; NA: not available. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.8866583.v1
title: Additional file 10: of Alternative polyadenylation produces multiple 3’ untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

description: Table S4. Alternative 3′ ends for pilot genes annotated from RNA-Seq data and RL-PAT experimental validation. The 3′ end positions and the relative abundances of the resulting 3’UTR isoforms were obtained using our IsoSCM workflow to process the 4 datasets from adult OM. The 3′ ends distant of less than 100 nt were merged as a single polyA sitea. For each putative polyA site, predicted canonical PASs matching in a [− 100;+ 100] window from the RNA-Seq-deduced 3′ end are indicatedb. Note that for Olfr1507 3’XL isoform, the closest canonical PAS is slightly outside the 100-nt precision windowc. The cleavage site and polyA tail length were experimentally mapped using RL-PAT on adult male OM, further confirming the polyA site usage for most of the 3’UTR isoforms. XL site of Olfr1507, M1 and L sites of Olfr15 were not confirmed by RL-PAT since no specific forward primer could be designed due to repeated sequences upstream of these polyA sitesd. For each confirmed polyA site, predicted canonical PASs, or variant hexamers when necessary, matching in a [− 100;0] window from the identified cleavage sites are indicatede. ND: not detected; NA: not available. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.8866568
title: Additional file 2: of Genome-wide mapping and profiling of γH2AX binding hotspots in response to different replication stress inducers

description: Table S1. List of Human CFSs used in this study. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.8866568.v1
title: Additional file 2: of Genome-wide mapping and profiling of γH2AX binding hotspots in response to different replication stress inducers

description: Table S1. List of Human CFSs used in this study. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.8866418
title: Equipment Selection of Hydraulic Fracturing Hard Roof in Fully Mechanized Face at Initial Mining data.docx

description: 16 hydraulic fracturing holes were designed in 1310 fully mechanized mining face. Each hydraulic fracturing hole features with the 50～55°between drilling holes and horizontal plane, the vertial side wall of roadway, the distance between drilling holes as 10m and the depth of drilling holes as 30m. Each borehole is sealed firstly from the bottom and conducted hydraulic fracturing three times with every 3 m intervals. The sealing pressure of sealing hole pump injecting clean water into the Hole-pacher is 13-14 MPa. The criterion for the end of hydraulic fracturing is that the water gushing around the hydraulic fracturing holes (boreholes) can be seen or the fracturing sound of the roof being pre-cracked can be heard. During construction, the flow rate of the three-plunger pump ranges from 15.3 to 20.2 L/min.
DOI: 10.6084/m9.figshare.8866556
title: Synthetic one dimensional regression data and fit

description: A synthetic one dimensional linear regression dataset with latent slope, intercept, and noise ("eps"). One hundred data points, fit with PyMC3. <br>True slope and intercept are included as deterministic variables.
DOI: 10.6084/m9.figshare.8866298
title: Raw VMI images

description: raw images taken by the VMI. Streaked down.
DOI: 10.6084/m9.figshare.8866298.v1
title: Raw VMI images

description: raw images taken by the VMI. Streaked down.
DOI: 10.6084/m9.figshare.8866259
title: Escherichia coli pathogenicity GWAS: input genome sequences

description: Input genomes for a GWAS study on Escherichia coli intrinsic pathogenicity<br>
DOI: 10.6084/m9.figshare.8866271
title: Lacertidae - physiology and occurrence datasets

description: Tables with raw data (as tab-delimited text):<br>- Curated database with locality records of lizards of the family Lacertidae- Original experimental measurement data of preferred temperature (Tpref) of lacertid lizards- Original experimental measurement data of evaporative water loss of lacertid lizards<br>
DOI: 10.6084/m9.figshare.8866253
title: Dataset of high thermal inertia residential buildings in sixteen Mediterranean locations for the 2050 climate change projection

description: This dataset comprises the performance and geometry data of 192000 buildings for 16 climate regions (12000 per climate region) for the projected 2050 climate change. The climate regions are CYP_Larnaca, DZA_Algiers, EGY_Alexandria, ESP_Malaga, ESP_Valencia, FRA_Marseille, GRC_Athens, ISR_TelAviv, ITA_Naples, ITA_Venice, LBY_Tripoli, MAR_Casablanca, MNE_Podgorica, TUN_Tunis, TUR_Istanbul, and TUR_Izmir. The geometric data was generated by the EPSAP algorithm and evaluated using EnergyPlus. The weather data was morphed using CCWorldWeatherGen.
DOI: 10.6084/m9.figshare.8866259.v1
title: Escherichia coli pathogenicity GWAS: input genome sequences

description: Input genomes for a GWAS study on Escherichia coli intrinsic pathogenicity<br>
DOI: 10.6084/m9.figshare.8866223
title: CCDB_8093.jpg

description: Single slice through a serial section reconstruction of the optic nerve head in the area of transition between myelinated and unmyelinated axons the mouse obtained through serial section scanning electron microscopy. The location of the transition zone may be viewed on the image map (red box) associated with this data set.
DOI: 10.6084/m9.figshare.8866136
title: Data from: Maternal Exposure to Environmental Disruptors and Sexually-Dimorphic Changes in Maternal and Neonatal Oxidative Stress

description: Supplemental tables and figures from: Maternal Exposure to Environmental Disruptors and Sexually-Dimorphic Changes in Maternal and Neonatal Oxidative Stress
DOI: 10.6084/m9.figshare.8866223.v1
title: CCDB_8093.jpg

description: Single slice through a serial section reconstruction of the optic nerve head in the area of transition between myelinated and unmyelinated axons the mouse obtained through serial section scanning electron microscopy. The location of the transition zone may be viewed on the image map (red box) associated with this data set.
DOI: 10.6084/m9.figshare.8866133
title: rugby.nc

description: The Six Nations Championship is a yearly rugby competition between Italy, Ireland,Scotland, England, France and Wales. Fifteen games are played each year, representingall combinations of the six teams.<br>This example uses and includes results from 2014 - 2017, comprising 60 totalgames. It models latent parameters for each team's attack and defense, as wellas a parameter for home team advantage.<br>See https://docs.pymc.io/notebooks/rugby_analytics.html by Peader Coylefor more details and references.
DOI: 10.6084/m9.figshare.8866058
title: PTFconstrained

description: The attached file gives the parameters of fitting soil water retention curve to van Genuchten model and characteristic length.
DOI: 10.6084/m9.figshare.8866058.v1
title: PTFconstrained

description: The file gives values of fitted parameters with and without constraints. More information will follow.
DOI: 10.6084/m9.figshare.8866058.v2
title: PTFconstrained

description: The file gives values of fitted parameters with and without constraints. More information will follow.
DOI: 10.6084/m9.figshare.8865965
title: Tectonically dominant surface denudation and topography in the Himalaya: Evidence from coupling between bedrock channel and valley hillslope processes

description: Drainage topographic and hydrological data used for channel and valley hillslope analysis. Each of the 16 table files share the same table head with 10 columns detailed in following: <b>Node</b>: Node number increasing downstream along trunk channel in the drainage analyzed. <b>Length/m</b>: Upstream channel length in meter at each node.<b>Ele/m</b>: Elevation in meter at each node.<b>Area/m^2</b>: Upstream drainagearea in m<sup>2</sup>at each node.<b>Sc</b>: Local channel gradient at each node.<b>Sh</b>: Average hillslope related to each node.<b>Q/m^3</b>: Upstream accumulated discharge in m<sup>3</sup>at each node.<b>lnQ</b>: Logarithmic value of upstream discharge at each node.<b>lnSc</b>: Logarithmic value of channel gradientat each node.<b>lnSh</b>: Logarithmic value of valley hillslope at each node.