cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5554636.v1
title: Experiment HaLT-SubjectL-161205-6States

description: Experiment in which subject performed 6 imageries of left and right hand motion, left and right leg motion, tongue motion, and a passive state.
DOI: 10.6084/m9.figshare.6926987.v1
title: Supplementary Material for: BAIBA Attenuates the Expression of Inflammatory Cytokines and Attachment Molecules and ER Stress in HUVECs and THP-1 Cells

description: <b><i>Objective:</i></b> β-Aminoisobutyric acid (BAIBA), a myokine, is a thymine catabolite that is induced during exercise, leading to browning of white fat, hepatic fatty acid oxidation, and suppression of hepatic lipogenesis. However, the effects of BAIBA on the progression of atherosclerosis remain unclear. <b><i>Methods:</i></b> We performed a Western blot analyses to determine various protein expression. ELISAs (enzyme-linked immunosorbent assays), cell adhesion assays, and cell viability assays were also performed on human umbilical vascular endothelial cells (HUVECs) and human monocytes (THP-1 cells). <b><i>Results:</i></b> In the current study, we demonstrate that BAIBA suppresses atherosclerotic reactions caused by lipopolysaccharide (LPS) treatment via an AMPK-dependent pathway. Treatment of HUVECs and THP-1 cells with BAIBA inhibited the LPS-induced phosphorylation of nuclear factor-κB (NFκB) and the secretion of proinflammatory cytokines. In HUVECs, expression of adhesion molecules and LPS-stimulated adhesion of THP-1 cells to the endothelium were significantly decreased after BAIBA treatment. Furthermore, LPS-induced endoplasmic reticulum (ER) stress and cell toxicity were significantly decreased after BAIBA treatment of HUVECs. Notably, all of these proatherosclerotic effects were fully abrogated by treatment with small interfering RNA targeting AMPK. <b><i>Conclusion:</i></b> BAIBA ameliorates LPS-induced atherosclerotic reactions via AMPK-mediated suppression of inflammation and ER stress.
DOI: 10.17632/pcv29wnfj2
title: GNSS Laboratory Burdwan (GLB) MADOCA PPP dataset

description: This is MADOCA PPP position solution data from GLB, The University of Burdwan, INDIA. http://bugnss.in
DOI: 10.17632/w48j7rn4x3
title: Synthetic data for LFP/LMO, NMC/LMO, and NCM/NCA blended electrodes vs. Graphite

description: Three synthetic datasets, each consisting of more than 260,000 unique Voltage vs. Capacity curves, covering all possible degradations for three exemplary cells with blended electrodes are provided here. 
More details can be found in "Electrode blending simulations Using the Mechanistic Modeling Approach" (10.3390/batteries10050159).
These datasets were calculated using the mechanistic modeling approach. See “Big data training data for artificial intelligence-based Li-ion diagnosis and prognosis“ (Journal of Power Sources, Volume 479, 15 December 2020, 228806) and "Analysis of Synthetic Voltage vs. Capacity Datasets for Big Data Li-ion Diagnosis and Prognosis" (Energies 2021, 14, 2371 ) for more details on the methodology.

The analysis of these particular datasets is provided in "Electrode blending simulations Using the Mechanistic Modeling Approach" published in Batteries (10.3390/batteries10050159). This work investigated the behavior of electrodes with blends composed of materials with a completely separated electrochemical response (LFP and LMO), mostly over-lapping response (NMC and NCA), and an only partially overlapping response (NMC and LMO). For each blend, a set of 5450 different degradation paths were defined combining every combination of loss of lithium inventory (LLI) and LAMs on NE as well as both components of the PE in 1/30th increments. For each path, 31 combinations of LAMPE1/LAMPE2 were considered to account for loss on either component of the PE. Finally, 49 simulations at different levels of degradation (from 0 to 50% with a periodically increasing time step) were then performed for each path for a total of 267,050 simulations. 

4 Variables are included, see attached readme.m file for details and example how to use.
DOI: 10.6071/m3cd6w
title: Dryad dataset awaiting publication

description: :unas
DOI: 10.6084/m9.figshare.21397239.v1
title: COMBAT

description: Processed input data for ScRAT from COMBAT (COvid-19 Multi-omics Blood ATlas). For original h5ad please see https://zenodo.org/record/5139561/files/COMBAT-CITESeq-DATA.h5ad
DOI: 10.6084/m9.figshare.25975315.v1
title: Multi-Stage Lithium Ion Battery Aging Study

description: This dataset encompasses a comprehensive investigation of combined calendar and cycle aging in commercially available lithium-ion battery cells (Samsung INR21700-50E). A total of 279 cells were subjected to 71 distinct aging conditions across two stages. Stage 1 is based on a non-model-based design of experiments (DoE), including full-factorial and Latin hypercube experimental designs, to determine the degradation behavior. Stage 2 employed model-based parameter individual optimal experimental design (pi-OED) to refine specific dependencies, along with a second non-model-based approach for fair comparison of DoE methodologies. While the primary aim was to validate the benefits of optimal experimental design in lithium-ion battery aging studies, this dataset offers extensive utility for various applications. They include training of machine learning models for battery life prediction, calibrating of physics-based or (semi-)empirical models for battery performance and degradation, and numerous other investigations in battery research. Additionally, the dataset has the potential to uncover hidden dependencies and correlations in battery aging mechanisms that were not evident in previous studies, which often relied on pre-existing assumptions and limited experimental designs.
DOI: 10.6084/m9.figshare.5125687.v1
title: Supplementary Material for: Beckwith-Wiedemann Syndrome: Growth Pattern and Tumor Risk according to Molecular Mechanism, and Guidelines for Tumor Surveillance

description: <b><i>Background:</i></b> Beckwith-Wiedemann syndrome (BWS) is an overgrowth syndrome associated with an increased risk of pediatric tumors. The underlying molecular abnormalities may be genetic (<i>CDKN1C</i> mutations or 11p15 paternal uniparental isodisomy, pUPD) or epigenetic (imprinting center region 1, ICR1, gain of methylation, ICR1 GOM, or ICR2 loss of methylation, ICR2 LOM). <b><i>Aim:</i></b> We aimed to describe a cohort of 407 BWS patients with molecular defects of the 11p15 domain followed prospectively after molecular diagnosis. <b><i>Results:</i></b> Birth weight and length were significantly higher in patients with ICR1 GOM than in the other groups. ICR2 LOM and <i>CDKN1C</i> mutations were associated with a higher prevalence of exomphalos. Mean adult height (regardless of molecular subtype, n = 35) was 1.8 ± 1.2 SDS, with 18 patients having a final height above +2 SDS. The prevalence of tumors was 8.6% in the whole population; 28.6 and 17.3% of the patients with ICR1 GOM (all Wilms tumors) and 11p15 pUPD, respectively, developed a tumor during infancy. Conversely, the prevalence of tumors in patients with ICR2 LOM and <i>CDKN1C</i> mutations were 3.1 and 8.8%, respectively, with no Wilms tumors. <b><i>Conclusion:</i></b> Based on these results for a large cohort, we formulated guidelines for the follow-up of these patients according to the molecular subtype of BWS.
DOI: 10.6084/m9.figshare.9927125.v2
title: Alpha Figures Dataset

description: Dataset for "The Generation and Propagation of the Human Alpha Rhythm".
DOI: 10.17632/3cd7dm4fpk
title: dataset-The efficacy of Ganduqing Granule in treating populations susceptible to the common cold：A multicenter randomized clinical trial

description: This dataset contains the original data for the paper ‘The efficacy of Ganduqing Granule in treating populations susceptible to the common cold: A multicenter randomized clinical trial’
DOI: 10.17632/frx57hkx36
title: Data for: Evaluation of BIM-based LCA results along the design process of a real building – Current limitations and proposals for future developments

description: This repository provides the Dynmo scripts for the parametric LCA tool for buildings described in the paper "Evaluation of BIM-based LCA results along the design process of a real building – Can it trigger sustainable design?"
DOI: 10.17632/nxsxfjt868
title: Raw numerical data on the performance of helium-air hybrid Stirling engine

description: In this dataset, numerical results on the performance of The helium-air hybrid Stirling engine are presented for the power, the efficiency, the heat loss, and the cost under the input parameters of the temperature, the pressure, the rotational speed, and the working helium percentage. These data were extracted from a modified “SIMPLE-II” code in the MATLAB software on the Gama-type Stirling engine.
DOI: 10.17632/sv5y27mzjb
title: SALAD: Syringe- based Arduino- operated Low-cost Antibody Dispenser

description: Point-of-care diagnostics, particularly Lateral Flow Assay (LFA), have been one of the most widely adopted technologies in clinical diagnosis over recent years, especially during the COVID-19 pandemic due to its feasibility, compactness, and rapid readout. However, their fabrication posed challenges for research groups with limited budgets. This study aimed to resolve one of the key issues in the fabrication process of LFA - antibody dispensing, by introducing a Syringe-based Arduino-operated Low-cost Antibody Dispenser (SALAD). This model can be self-manufactured at a lower cost ($200.61) compared to the commercialized models, expected to provide alternative approaches for researchers that are interested in LFA. By utilizing a microneedle small gauge (26G), stepper motors-driven syringe pump, and conveyor belt, SALAD can form micro-droplets to create an even band of antibodies. This study includes (1) the design of SALAD and (2) the evaluation of SALAD using food dye, antibody-[HRP] conjugates, and direct ELISA to test the stability of dispensed antibodies under capillary forces. The results showed comparable performance between SALAD and a commercialized model - Claremont ALFRD, with SALAD exceeding in affordability and feasibility. SALAD was able to yield an even signal, uniform bandwidth, and low background noise, yet optimization in the conveyor belt should be considered to enhance stability. 
This includes the CNC Cutting components files (STL), designed using the FUSION 360 Program, an Arduino Operation Code for the Syringe-based Arduino-operated Low-cost Antibody Dispenser (SALAD) and a MP4 video demonstrating how the Line Dispenser works.
DOI: 10.15468/dl.crnrkk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Acipenseriformes, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , )",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((109.630957 19.966667,110.78571 19.966667,110.78571 21.783333,109.630957 21.783333,109.630957 19.966667))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006554-260129131611470/datasets/export for details.
DOI: 10.15468/dl.pqynat
title: Occurrence Download

description: A dataset containing 11888 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Mexico, Argentina, Brazil, Ecuador, Chile, Canada, Colombia, Cuba, Costa Rica)",
 "TaxonKey is Tyto furcata (Temminck, 1827)"
 ]
}

 The dataset includes 11888 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001847-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2gezu
title: Occurrence Download

description: A dataset containing 3542 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calocybe gambosa (Fr.) Singer"
 ]
}

 The dataset includes 3542 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001841-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whvbw9
title: Occurrence Download

description: A dataset containing 44689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Potentilla crantzii (Crantz) Beck ex Fritsch",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 44689 records from 325 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001843-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dkj2e2
title: Occurrence Download

description: A dataset containing 25679 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Odonata"
 ]
}

 The dataset includes 25679 records from 284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004359-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.ttdz08m8p
title: Temperature-dependent interspecific interference alters pygmy backswimmer predation on water fleas

description: Co-occurring predators may compete for the same prey, with interactions
 among them potentially modifying predator-prey dynamics. Although
 predator-prey interactions are often studied in the context of direct
 competition, less attention has been given to how non-competing predators
 influence the foraging of other predators by their physical presence.
 Abiotic factors like temperature also can shape such interactions by
 influencing the behaviour of prey, predator, or other species occupying
 the same space. This study investigates how increasing densities of a
 non-competing predator – the water mite Arrenurus sp. – and increasing
 water temperature (16°C and 25°C) affect the functional response of the
 pygmy backswimmer, Neoplea striola, eating
 juvenile Daphnia magna. The functional responses were Type II
 across all treatments. Functional responses became shallower as water mite
 densities increased at 25°C but not at 16°C, indicating
 temperature-dependent interference from a non-competing predator. With no
 water mites, however, the functional response was higher at 25°C than at
 16°C, caused by higher space clearance rates at 25°C in the absence of
 water mites. Handling times were lower at 25°C than at 16°C but were
 unaffected by water mite density. The differences in parameters suggest
 that the mechanism of inter-specific interference was through movement,
 encounters, or capture success, rather than through post-capture
 processing. This study showed how non-competing predators may affect
 predator foraging, particularly at higher temperatures.
description: # Temperature-dependent interspecific interference alters pygmy
 backswimmer predation on water fleas Dataset DOI:
 [10.5061/dryad.ttdz08m8p](10.5061/dryad.ttdz08m8p) ## Description of the
 data and file structure File: backswimmer_mite.csv This data contains
 predation rate (prey_killed) of pygmy backswimmer *Neoplea striola*
 against different densities (5, 7, 10, 15, 20, 40) of prey, juvenile
 *Daphnia magna* in two different temperature (16°C & 25°C) setup
 combined with and the presence of non-consumptive water mite in three
 densities (0, 2, 4).  This work used functional response as the model to
 quantify the predation rate of pygmy backswimmers across different
 temperature and presence of different densities of non-competing predator.
 Note: Units of both prey densities and water mite densities are
 individuals per arena. ## Code/software The data is in CSV file. For the
 work R studio was used to perform the analyses.
DOI: 10.15468/dl.8fd546
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pomphorhynchus laevis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 202 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004362-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.02v6wwqfp
title: Phylogenomic placement of a new genus and species of jumping spiders (Araneae: Salticidae: Spartaeini) based on UCE data

description: Recent phylogenomic studies have established a robust backbone
 relationship for the seven subfamilies of jumping spiders (Salticidae),
 and identified an enigmatic clade within the subtribe Spartaeina, which
 significantly contributes to the diversity of the subfamily Spartaeinae.
 However, the classification of this enigmatic lineage remained unresolved
 due to the availability of only one male specimen at that time. In this
 study, we extensively examined additional materials and obtained
 ultra-conserved element (UCE) data for more putative species of this
 lineage. The UCE phylogenetic results provided a comprehensive and
 strongly supported framework for the subtribe Spartaeina, and confirmed
 that the enigmatic clade is a distinct lineage, separate from genera with
 similar morphological traits. Coupled with morphological evidence, we
 describe a new genus, Protaeus gen. nov., and three new species: Protaeus
 nyarlathotep sp. nov., P. dracosquamus sp. nov., and P. gulliwingus sp.
 nov. We also revise the classification of three previously misplaced
 species into this new genus: P. jianfeng (Song & Zhu, 1998) comb.
 nov. (transferred from Portia), P. forcipiformis (Yang, Liu, Liu &
 Peng, 2017) comb. nov. (transferred from Spartaeus) and P. shiwandashan
 (Wang, Mi, Li & Xu, 2024) comb. nov. (transferred from Mintonia).
 Additionally, we redescribe the male of P. jianfeng and provide a
 description of the female for the first time. This study enhances our
 understanding of evolutionary relationships within Spartaeina and
 underscores the importance of further exploration within this diverse
 group.
description: # Phylogenomic placement of a new genus and species of jumping spiders
 (Araneae: Salticidae: Spartaeini) based on UCE data
 https://doi.org/10.5061/dryad.02v6wwqfp  Phylogenomic insights into the
 subtribe Spartaeina of jumping spiders (Araneae: Salticidae: Spartaeini):
 A new genus and species revisions unveiled by UCE data ## Description of
 the data and file structure Concatenate.2320loci.rename.fas Description:
 This is the final concatenated ultra-conserved element (UCE) dataset for
 77 species across 2320 UCE loci for phylogenetic analyses. Note: We
 recommend viewing this file using Notepad++. 2320loci.partitions
 Description: This is the partition file for the concatenated 2320-UCE data
 matrix "Concatenate.2320loci.rename.fas". Note: We recommend
 viewing this file using Notepad++. ML.2320loci.rename.tre Description:
 This is the phylogenetic result from the Maximum Likelihood (ML) analysis.
 Note: Tree in newick format, which could be viewed in Notepad++ or
 FigTree. 2320loci.genetrees.rename.tre Description: Contains the gene
 trees of the 2320 UCE loci for the ASTRAL species tree analyses. Note:
 These trees are in Newick format, which could be viewed in Notepad++ or
 FigTree. Astral.2320loci.rename.tre Description: This is the phylogenetic
 result from the ASTRAL analysis. Note: Tree in newick format, which could
 be viewed in Notepad++ or FigTree.
DOI: 10.15468/dl.bxctun
title: Occurrence Download

description: A dataset containing 3220 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Icaricia lupini"
 ]
}

 The dataset includes 3220 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004364-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29917601
title: <b>An experimental test of central place foraging theory in a cooperatively breeding bird</b>

description: Data associated with the manuscript 'An experimental test of central place foraging theory in a cooperatively breeding bird'.
DOI: 10.6084/m9.figshare.29917601.v1
title: <b>An experimental test of central place foraging theory in a cooperatively breeding bird</b>

description: Data associated with the manuscript 'An experimental test of central place foraging theory in a cooperatively breeding bird'.
DOI: 10.5061/dryad.k6djh9wjz
title: Data from: Exceptional fossils from Peru and an integrative phylogeny reconcile the evolutionary timing and mode of Gavialis and its kin

description: The acquisition of a long and slender snout (longirostry) resulted in
 extreme similar morphology across crocodylians and, therefore, raised a
 conflict between morphological and molecular phylogenetic hypotheses
 involving the longirostrine living gharials, Gavialis gangeticus and
 Tomistoma schlegelii. This discrepancy is not only topological but also
 concerns divergence time estimates for the crown clade Gavialidae,
 especially due to the inclusion of another longirostrine forms, ancient
 ‘thoracosaurs’—which introduces significant chronostratigraphic
 inconsistencies. To contribute to reconcile these contrasting lines of
 evidence, exceptionally preserved fossils of a new Miocene gavialid from
 Peru were included in a total-evidence Bayesian analysis. Our analysis
 integrates morphological, molecular, and chronostratigraphic data and
 incorporates most taxa of the largest adaptive radiation of gavialids,
 which occurred in the Cenozoic of South American and Caribbean (SAC). Our
 results demonstrate that including SAC taxa substantially increase
 divergence estimates for Gavialidae, surpassing those inferred from
 molecular data alone. The exceptional preservation of the new Peruvian
 fossils enabled character re-evaluation for gavialids and ‘thoracosaurs,’
 the latter recovered even outside Crocodylia, and suggesting that
 longirostry resulted from independent evolution. These findings underscore
 the crucial role of SAC gavialids for understanding the morphological
 trajectory and phylogenetics of longirostrine crocodylians.
description: # Data from: Exceptional fossils from Peru and an integrative phylogeny
 reconcile the evolutionary timing and mode of *Gavialis* and its kin
 Dataset DOI: [10.5061/dryad.k6djh9wjz](10.5061/dryad.k6djh9wjz) ##
 Description of the data and file structure This is a zipped file
 containing: * (SF1) The morphological matrix in nexus format. * (SF2) The
 molecular matrix in nexus format. * (SF3) The executable BEAST file. The
 BEAST file was written for BEAST v.2.7.6. * (SF4) The final annotated
 tree. * (SF5) The R code to plot the tree using the *strap* package. *
 (SF6) The final .log file (used in the R code). Additionally, the
 Electronic_Supplementary_Material__FV.docx ### Files and variables ####
 File: Supplementary_files.zip **Description:** Here are available the
 morphological and data matrices, the executable BEAST file used to conduct
 the analyses, the final phylogenetic tree with its respective log file, as
 well as the code used to plot the tree. #### File:
 Electronic_Supplementary_Material\_ FV.docx **Description:** This is the
 Electronic Supplementary material. Here is information about the methods
 and additional morphological information ## Code/software We used BEAST
 v.2.7.6 software to conduct the phylogenetic analyses. We visualized the
 final data using the strap package in R.2023.01. The R code is available
 in SF5.