cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14288/1.0401223
title: Predation shapes behavioral lateralization: insights from an adaptive radiation of livebearing fish

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p style="text-align:start;text-indent:0px;"&gt;&lt;span&gt;&lt;span style="font-style:normal;"&gt;&lt;span&gt;&lt;span style="font-weight:normal;"&gt;&lt;span style="letter-spacing:normal;"&gt;&lt;span&gt;&lt;span&gt;&lt;span style="white-space:normal;"&gt;&lt;span&gt;&lt;span&gt;&lt;span&gt;Hemispheric brain lateralization can drive the expression of behavioral asymmetry, or laterality, which varies notably both within and among species. To explain these left–right behavioral asymmetries in animals, predator-mediated selection is often invoked. Recent studies have revealed that a relatively high degree of lateralization correlates positively with traits known to confer survival benefits against predators, including escape performance, multitasking abilities, and group coordination. Yet, we still know comparatively little about 1) how consistently predators shape behavioral lateralization, 2) the importance of sex-specific variation, and 3) the degree to which behavioral lateralization is heritable. Here, we take advantage of the model system of the radiation of Bahamas mosquitofish (&lt;i&gt;Gambusia hubbsi) &lt;/i&gt;and measure behavioral lateralization in&lt;i&gt; &lt;/i&gt;hundreds of wild fish&lt;i&gt; &lt;/i&gt;originating from multiple blue holes that differ in natural predation pressure. Moreover, we estimated the heritability of this trait using laboratory-born fish from one focal population. We found that the degree of lateralization but not the particular direction of lateralization (left or right) differed significantly across high and low predation risk environments. Fish originating from high-predation environments were more strongly lateralized, especially females. We further confirmed a genetic basis to behavioral lateralization in this species, with significant additive genetic variation in the population examined. Our results reveal that predation risk represents one key ecological factor that has likely shaped the origin and maintenance of this widespread behavioral phenomenon, even potentially explaining some of the sex-specific patterns of laterality recently described in some animals. &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
DOI: 10.14288/1.0402611
title: Long term pest monitoring for spotted wing drosophila (SWD) at the UBC farm

description: Spotted wing drosophila (SWD) is a pest of economic concern in BC. Since 2019 we are monitoring for SWD at the UBC Farm, using apple cider vinegar traps. In total, we deployed 10 traps in ten locations in different landscape elements at the UBC farm. Year round, samples are collected weekly from these traps and SWD are identified and counted. This project enables long-term estimates of SWD populations at the UBC Farm, measuring fluctuations in abundance in different habitat elements over time.
DOI: 10.14288/1.0402612
title: Long term pest monitoring for click beetles at the UBC farm

description: Click beetles are pests of economic concern in BC. Since 2018 we are monitoring for two species of click beetles at the UBC Farm, Agriotes lineatus and Agriotes obscurus, using pitfall traps baited with pheromone lures. In total, we deployed 20 traps paired in ten locations, with each location possessing one trap baited for A. lineatus and one trap baited for A. obscurus. Each week from April to July samples are collected from these traps and the click beetles are identified and counted. This project enables long-term estimates of click-beetle populations at the UBC Farm, while also providing long-term biodiversity estimates of ground-dwelling insects at the farm in general. The collected data will measure fluctuations in click beetle abundance in different habitat elements over time.
DOI: 10.14288/1.0401392
title: Data for the article "The lack of avoidance of total dissolved gas supersaturation in juvenile rainbow trout"

description: We investigated whether individual rainbow trout (Oncorhynchus mykiss; 9-53g) avoid a potentially lethal level of total dissolve gas (TDG) supersaturation using lateral movements during an acute exposure. As there is no mechanism by which fish can detect and avoid TDG supersaturation in shallow water, we hypothesize that rainbow trout do not directly detect TDG supersaturation. Most previous studies have tested TDG avoidance in groups of fish, which may confound responses because many fishes, such as juvenile rainbow trout, display territorial behavior. We placed rainbow trout individually into a flume and allowed them to swim freely between two channels for 6 min; one channel contained water at 145% TDG and the other contained air-equilibrated water. We then switched treatments between channels and tested fish in the same way for an additional 6 min. We quantified the duration spent by fish in each channel during the last 2 min of each 6 min exposure. Fish spent more time in 145% TDG water than air-equilibrated water, but there was no statistically significant effect of TDG treatment on the duration spent by fish in a channel. These results indicate that fish did not avoid a potentially lethal level of TDG. This suggests that some fishes in shallow water may be unable to avoid harmful TGD supersaturation generated by events such as spilling from hydroelectric dams.
DOI: 10.14288/1.0401407
title: Data for A Simple Chamber Design for Calibrating Weiss Saturometers and Recommendations for Measuring and Reporting Total Dissolved Gases

description: Total dissolved gas (TDG) supersaturation downstream of features such as hydroelectric dams can cause harmful bubbles to grow in the tissues of aquatic animals. TDG supersaturation is often measured using Weiss saturometers, but information on the calibration and use of these instruments is scarce in the literature. Regular calibration, accurate measurement procedures, and standardized TDG reporting are important for generating reliable measurements that are easily interpreted. We provide a description of low-cost calibration equipment that practitioners can build themselves and recommend a specific two-point calibration protocol. We also recommend methods for the more accurate measurement and reporting of TDG.
DOI: 10.14288/1.0401232
title: Data and code for "Learning to stand with unexpected sensorimotor delays"

description: These files consist of data and Matlab code needed to reproduce the main result figures from Experiments 1, 2 and 3 of "Learning to stand with unexpected sensorimotor delays". Additionally, LabVIEW code is provided to produce robust Bayesian fits for perceptual data. Data and results include: standing balance behavior (sway velocity variance, percent time within balancing limits) with imposed delays, vestibular-evoked muscle responses (coherence, gain, cross-covariance) when standing with imposed delays, and perceptual thresholds to detecting unexpected standing motion when standing with imposed delays. &lt;p&gt; Data are provided in spreadsheets (for viewing purposes) and also in .mat matlab files (to run with source code).
DOI: 10.14288/1.0401262
title: BC Seed Trials Replicated Leek Variety Trials 2017-2018

description: This dataset comprises data from two years of replicated leek variety trials carried out at the UBC Farm. Production and quality data were collected as part of the BC Seed Trials, a farmer-participatory variety trialing project that sought to identify vegetable varieties with strong performance for both fresh market sales and seed production in British Columbia. Trials used the “mother-baby” design; the UBC Farm served as a "mother" site that conducted replicated trials, and several on-farm “baby” sites carried out unreplicated trials. While many leek varieties were trialed in both years, some were trialed in only one year. The set of traits evaluated also varied somewhat between years. This variability resulted in substantial missing data, but the dataset can be useful with appropriate filtering for varieties and traits of interest. The metadata tab summarizes the attributes rated per year, defines rating scales, and indicates when rating scales were converted for consistency.
DOI: 10.14288/1.0401263
title: BC Seed Trials and CANOVI Replicated Carrot Variety Trials 2017-2019 - UBC Farm

description: This dataset comprises data from three years of replicated carrot variety trials carried out at the UBC Farm. Production and quality data were collected as part of farmer-participatory variety trials that sought to identify carrot varieties with strong performance for both fresh market sales and seed production in British Columbia. Trials used the “mother-baby” design and included up to three “mother” sites (like UBC Farm) that conducted replicated trials, along with many on-farm “baby” sites that carried out unreplicated trials. The 2017 and 2018 trials were part of the BC Seed Trials project, and the 2019 trial was part of the nationwide Canadian Organic Vegetable Improvement (CANOVI) project. A different assortment of carrot varieties was trialed each year, and the set of traits evaluated also varied among years. This variability resulted in substantial missing data, but the dataset can be useful with appropriate filtering for varieties and traits of interest. The metadata tab summarizes the attributes rated per year, defines rating scales, and indicates when rating scales were converted for consistency among years.
DOI: 10.14288/1.0401264
title: BC Seed Trials and CANOVI Replicated Corno di Toro Pepper Variety Trials 2018-2019

description: This dataset comprises data from 2 years of replicated corno di toro pepper variety trials carried out at the UBC Farm. Production and quality data were collected as part of a farmer-participatory variety trialing project that sought to identify vegetable varieties with strong performance for both fresh market sales and seed production in British Columbia. Trials used the “mother-baby” design; the UBC Farm served as a "mother" site that conducted replicated trials, and several on-farm “baby” sites carried out unreplicated trials. The 2018 and 2019 trials were part of the BC Seed Trials and CANOVI projects, respectively. Some variation existed in the sets of varieties and traits evaluated each years, which resulted in substantial missing data. However, the dataset can be useful with appropriate filtering for varieties and traits of interest. The metadata tab summarizes the attributes rated per year and defines rating scales. Plots consisted of 9 to 10 plants.
DOI: 10.14288/1.0402342
title: Peppermint intercropping for pest management

description: We established a field intercropping experiment at UBC Farm in 2017. The goal of this experiment was to evaluate the effectiveness of peppermint plants compared to traditional ryegrass/clover mixes in reducing Drosophila suzukii oviposition in the field, and the effect of peppermint intercrops on other invertebrates. In the field, we monitored sentinel fruit baits weekly for D. suzukii infestation. Additionally, we monitored intercropping effects on the invertebrate community through weekly pitfall trap collection. We then sorted insects caught in pitfall traps and identified to order level and categorized insects caught according to functional group: predator, herbivore, or detritivore.
DOI: 10.14288/1.0401224
title: Analysis Data for "Identifying and characterizing pesticide use on 9,000 fields of organic agriculture"

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;We identify the location of ~9,000 organic fields from 2013 — 2019 using field-level crop and pesticide use data, along with state certification data, for Kern County, CA, one of the US’ most valuable crop producing counties. We parse apart how being organic relative to conventional affects decisions to spray pesticides and, if spraying, how much to spray. We show the expected probability of spraying any pesticides is reduced by about 30 percentage points for organic relative to conventional fields, across different metrics of pesticide use including overall weight applied and coarse ecotoxicity metrics. We report little difference, on average, in pesticide use for organic and conventional fields that do spray, though observe substantial crop-specific heterogeneity.&lt;/p&gt;
DOI: 10.34740/kaggle/dsv/11551628
title: Balochi Language to English Translation Dataset
DOI: 10.14288/1.0401471
title: Hawaii Pyroxenite Data

description: Data for publication in Communications Earth and Environment
DOI: 10.14288/1.0401440
title: Data for: Thallium isotopic compositions in Hawaiian lavas: evidence for recycled materials on the Kea side of the Hawaiian mantle plume

description: Data from G-cubed paper "Thallium isotopic compositions in Hawaiian lavas: evidence for recycled materials on the Kea side of the Hawaiian mantle plume". These are supporting information data tables that contain all data generated from this study as well as literature data compiled and used in the publication. Table S1 contains the data collected during this study and includes sample information as well as reference materials and standards. Table S2 contains literature data used and includes radiogenic isotopes and major elements. Table S3 contains a compilation of literature O, Ce, He, and W isotopic data for shield-stage Hawaiian samples.
DOI: 10.14288/1.0402130
title: Replication Data for: Individual and environmental factors associated with defecation while lying down in dairy cows

description: How lying stalls in barns housing dairy cows become contaminated with feces is not well understood. We investigated the influence of cow-cow differences and overstocking on the likelihood that cows defecate while lying down in the stall. Cows in later stages of pregnancy were less likely to perform this behavior, with no effect of weight, parity, age, or lameness. Also, the more time cows spent lying down the greater the likelihood of the behavior, but the cow to stall ratio had no effect.
DOI: 10.14288/1.0401723
title: Growth genes are implicated in the evolutionary divergence of sympatric piscivorous and insectivorous rainbow trout (Oncorhynchus mykiss)

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Identifying ecologically significant phenotypic traits and the genomic mechanisms that underly them are crucial steps in understanding the traits associated with population divergence. We used genome-wide data to identify genomic regions associated with a key trait that distinguishes two ecotypes of rainbow trout (Oncorhynchus mykiss) – insectivores and piscivores – that coexist in Kootenay Lake, southeastern British Columbia, for the non-breeding portion of the year. "Gerrards" are large-bodied (breeding maturity at &gt;60cm) piscivores that spawn 50km north of Kootenay Lake in the Lardeau River, in contrast to the insectivorous populations that are on average smaller in body size, mainly forage on aquatic insects, and spawn in tributaries immediately surrounding Kootenay Lake. We used pool-seq data covering 60 percent of the genome to assess the level of genomic divergence between ecotypes, test for genotype-phenotype associations, and identify loci that may play functional or selective roles in their divergence. Analysis of nearly seven million SNPs provided a genome-wide mean FST estimate of 0.18, indicating a high level of reproductive isolation between populations. The window-based FST analysis did not reveal “islands” of genomic differentiation; however, the window with highest FST estimate did include a gene associated with insulin secretion. Although we explored the use of the “Local score” approach to identify genomic outlier regions, this method was ultimately not used because simulations revealed a high false discovery rate (20 percent). Gene Ontology (GO) analysis identified several growth processes as enriched in genes occurring in the 200 most divergent genomic windows, indicating the importance of genetically-based growth and growth-related metabolic functions in the divergence of these ecotypes. In spite of their sympatric coexistence, a high degree of genomic differentiation separates the populations of piscivores and insectivores, indicating little to no contemporary genetic exchange between ecotypes. Our results further indicate that the large body piscivorous 27 phenotype is likely not due to one or a few loci of large effect, rather it may be controlled by several loci of small effect, thus highlighting the power of whole-genome low-coverage sequencing in phenotypic association studies.&lt;/p&gt;
DOI: 10.15468/dl.e8fnxv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Osmeriformes",
 "Geometry POLYGON ((14.3361 -25.1213, 14.3389 -25.1504, 17.9648 -25.1504, 17.9648 -16.1504, 11.2727 -16.1504, 11.2674 -18.0072, 11.5829 -18.7133, 12.1645 -19.4011, 13.5129 -22.0148, 13.9862 -22.5966, 13.9591 -24.1097, 14.3361 -25.1213))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008249-250525065834625/datasets/export for details.
DOI: 10.34740/kaggle/dsv/12031930
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.ep829e
title: Occurrence Download

description: A dataset containing 4221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Orectolobiformes"
 ]
}

 The dataset includes 4221 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006200-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23728/b2share.06d41b590b7745b2b41430b20df3e15b
title: Hohes Holz - Gross Primary Production (2020-2023)

description: Gross Primary Production (GPP) represents the total amount of carbon fixed by plants through photosynthesis in an ecosystem over a specific period. GPP data products are derived using a data-driven approach that integrates Earth observation data with in-situ carbon flux measurements. Specifically, GPP estimations combine Sentinel-2 multispectral imagery with carbon flux data from eddy covariance towers, employing the XGBoost machine learning algorithm for prediction. The resulting GPP maps are generated at a 10-meter spatial resolution and a temporal frequency up to 5 days, covering the period from March 2017 to December 2023. The temporal resolution is contingent upon 50% free-cloud conditions in the area of interest, with lower frequencies occurring during periods of high cloud coverage. The spatial extent of the GPP maps corresponds to the boundaries of long-term observation sites as recorded in the DEIMS-SDR registry (e.g., d2f5457f-6318-494a-b363-8098356035b7). For sites where the boundary area is smaller than 1 km², or if only point coordinates are available in DEIMS-SDR, the maps are constrained to a 1 km x 1 km bounding box.
description: The methodology integrates multiple data sources via machine learning techniques to estimate Gross Primary Production (GPP) across different ecosystems. The process begins with data pre-processing, including the selection of sites based on criteria such available vegetation information, at least three full years of eddy covariance flux data. GPP and environmental data (e.g. air temperature, vapor pressure deficit, etc.) are extracted from the ICOS database across different ecosystem types. Then, different remote sensing (RS) indices (e.g NDVI, EVI, etc.) are estimated in GEE using Sentinel-2 MSI data as the mean value of the pixels found inside the climatological footprint 70 (an area were 70% of the GPP measurements are coming from). Both data coming from ICOS dataset and RS indices are used as predictors for the model. The data is split, with 70% used for training and 30% for testing. In the model setup, an XGBoost model is trained using the selected environmental and RS based indices. The model parameters are fine-tuned to improve accuracy. The remaining 30% of testing data is used to evaluate the model’s performance by comparing its predictions against in-situ GPP data. Error metrics like Mean Absolute Error (MAE), Root Mean Absolute Error (RMAE), and R² are provided. The maps computation phase applies the trained model to ecosystem boundaries from the DEIMS website to generate 5-day GPP maps.
description: Acknowledgement 

This work on the AGAME Gross Primary Production data product is funded by the European Space Agency (ESA, contract no. 4000143740/24/I-AG) in the frame of the GEOSS Platform Plus project (Horizon Europe, GA No. GA.Nr. 101039118). The work done is based on the requirements from eLTER contributing in addition to the eLTER Site Information Cluster. In-situ data for model calibration and validation has been derived from the ICOS Carbon Portal.
DOI: 10.3886/e216921
title: Imposter Syndrome and Irrational Procrastination: A Single Institution Cross-sectional Study of Preclinical US Medical Student Data

description: Cross-sectional data obtained by surveying United States pre-clinical medical students at a single institution's MD program. The measures/inventories used were the Imposterism scale by Leary et al. and the Irrational by Steel. A total of 28 survey responses were recorded.
DOI: 10.3886/e216921v1-179101
title: Imposter Syndrome and Irrational Procrastination: A Single Institution Cross-sectional Study of Preclinical US Medical Student Data

description: Cross-sectional data obtained by surveying United States pre-clinical medical students at a single institution's MD program. The measures/inventories used were the Imposterism scale by Leary et al. and the Irrational by Steel. A total of 28 survey responses were recorded.
DOI: 10.3535/lmc-kgb-zc5
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yaf-4j4-xv0
title: †Protetragonites quadrisulcatus (d'Orbigny, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c9x-b8m-qdl
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mge-n3l-jwc
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yp3-1rt-rq7
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zs4-7ny-xjg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kf0-s00-90z
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x9t-kn5-vxh
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a1a-gmb-8dk
title: Placenticeras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/he3-eg0-lwk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/49k-040-brd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h4s-b4d-m7b
title: †Acrioceras meriani (Ooster, 1860)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/561-hrm-56f
title: Acrioceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9w6-gs1-brc
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/54n-vx9-n10
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.