cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7755605
title: Additional file 6: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: Title of data: Protease substrate analysis for the uncovered structural proteins. Genes that were uncovered using the genome wide association, the gene enrichment procedures and the gene-trait network analysis were assessed. The PROSPER server was used to identify proteins that are substrates of Îź-calpain. (XLS 43 kb)
DOI: 10.6084/m9.figshare.7755605.v1
title: Additional file 6: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: Title of data: Protease substrate analysis for the uncovered structural proteins. Genes that were uncovered using the genome wide association, the gene enrichment procedures and the gene-trait network analysis were assessed. The PROSPER server was used to identify proteins that are substrates of Îź-calpain. (XLS 43 kb)
DOI: 10.7284/113580
title: Winch data collected during research cruise AE1305 using a Markey DUSH-5 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755602
title: Additional file 6: of Gene duplication and evolution in recurring polyploidizationâ diploidization cycles in plants

description: The list of all RNA-Seq samples collected from different plants investigated in this study. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.7755608.v1
title: Additional file 7: of Gene duplication and evolution in recurring polyploidizationâ diploidization cycles in plants

description: The 232 most conserved gene families in 141 plants. (XLSX 1968 kb)
DOI: 10.6084/m9.figshare.7755596
title: Additional file 4: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: Gene lists and genes identified as enriched using the DAVID based enrichment approach. These genes were found enriched for meat quality related traits recorded in longissimus dorsi muscle from Brahman-Angus crossbreed steers. The bolded enriched genes were found in at least four traits simultaneously. (XLS 566 kb)
DOI: 10.6084/m9.figshare.7755602.v1
title: Additional file 6: of Gene duplication and evolution in recurring polyploidizationâ diploidization cycles in plants

description: The list of all RNA-Seq samples collected from different plants investigated in this study. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.7755587
title: Additional file 3: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: Genes identified as enriched by GO term in the tissue restricted gene enrichment analysis. A total number of ten GO terms were identified as enriched. These GO terms were identified for meat quality related traits measured in the longissimus dorsi muscle from Brahman-Angus crossbreed steers. Bold gene IDs were accounted twice, provided that they had two associated uncorrelated SNPs. (XLS 47 kb)
DOI: 10.6084/m9.figshare.7755590
title: Additional file 5: of Gene duplication and evolution in recurring polyploidizationâ diploidization cycles in plants

description: The enriched GO terms for tandem and proximal duplicate genes in Arabidopsis thaliana. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.7755596.v1
title: Additional file 4: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: Gene lists and genes identified as enriched using the DAVID based enrichment approach. These genes were found enriched for meat quality related traits recorded in longissimus dorsi muscle from Brahman-Angus crossbreed steers. The bolded enriched genes were found in at least four traits simultaneously. (XLS 566 kb)
DOI: 10.7284/113588
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AE1306 using a Hawaii UHDAS instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755581
title: Additional file 4: of Gene duplication and evolution in recurring polyploidizationâ diploidization cycles in plants

description: The fitted Ks peak for WGD genes in each species. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.7755587.v1
title: Additional file 3: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: Genes identified as enriched by GO term in the tissue restricted gene enrichment analysis. A total number of ten GO terms were identified as enriched. These GO terms were identified for meat quality related traits measured in the longissimus dorsi muscle from Brahman-Angus crossbreed steers. Bold gene IDs were accounted twice, provided that they had two associated uncorrelated SNPs. (XLS 47 kb)
DOI: 10.6084/m9.figshare.7755590.v1
title: Additional file 5: of Gene duplication and evolution in recurring polyploidizationâ diploidization cycles in plants

description: The enriched GO terms for tandem and proximal duplicate genes in Arabidopsis thaliana. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.7755581.v1
title: Additional file 4: of Gene duplication and evolution in recurring polyploidizationâ diploidization cycles in plants

description: The fitted Ks peak for WGD genes in each species. (XLSX 62 kb)
DOI: 10.7284/113589
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1306 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755572
title: Additional file 3: of Gene duplication and evolution in recurring polyploidizationâ diploidization cycles in plants

description: The absolute number of different modes of duplicate gene pairs in each taxon. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.7755578
title: Additional file 2: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: Enriched clusters across meat quality related phenotypes determined by the DAVID server. The phenotypes were measured in longissimus dorsi muscle from an Angus-Brahman crossbred population. Significance of each enriched term was adjusted applying the Benjamini-Hochberg p-value correction. (XLS 37 kb)
DOI: 10.6084/m9.figshare.7755578.v1
title: Additional file 2: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: Enriched clusters across meat quality related phenotypes determined by the DAVID server. The phenotypes were measured in longissimus dorsi muscle from an Angus-Brahman crossbred population. Significance of each enriched term was adjusted applying the Benjamini-Hochberg p-value correction. (XLS 37 kb)
DOI: 10.6084/m9.figshare.7755569
title: Additional file 1: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: GWA results for WBSF, marbling, cooking loss, tenderness, juiciness, connective tissue, and flavor. The phenotypes were measured in longissimus dorsi muscle in Brahman-Angus crossbreed steers. SNP location is shown using the Bos_taurus_UMD_3.1.1 assembly. Gene ontology by gene is presented. (XLS 46 kb)
DOI: 10.6084/m9.figshare.7755566
title: Additional file 14: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: List of GO terms and gene lists included in the tissue restricted gene enrichment analysis. A total number of 105, 89, 85, 92, 81, 86, and 95 GO terms for WBSF, marbling, cooking loss, tenderness, juiciness, connective tissue, and flavor respectively, were included in the analysis. These sets of GO terms were analyzed provided a GO term prediction analysis for the list used as background with DAVID Bioinformatic Resources 6.8 server [112]. The gene lists used in this analysis show the stable gene ID from ensembl and the number of associated uncorrelated SNPs of each gene by trait. (XLS 534 kb)
DOI: 10.6084/m9.figshare.7755569.v1
title: Additional file 1: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: GWA results for WBSF, marbling, cooking loss, tenderness, juiciness, connective tissue, and flavor. The phenotypes were measured in longissimus dorsi muscle in Brahman-Angus crossbreed steers. SNP location is shown using the Bos_taurus_UMD_3.1.1 assembly. Gene ontology by gene is presented. (XLS 46 kb)
DOI: 10.6084/m9.figshare.7755572.v1
title: Additional file 3: of Gene duplication and evolution in recurring polyploidizationâ diploidization cycles in plants

description: The absolute number of different modes of duplicate gene pairs in each taxon. (XLSX 49 kb)
DOI: 10.7284/113586
title: Fluorometer data collected during research cruise AE1306 using a Turner 10-AU instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755563
title: Additional file 2: of Gene duplication and evolution in recurring polyploidizationâ diploidization cycles in plants

description: The detailed information of 141 plant species used in this study. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.7755566.v1
title: Additional file 14: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: List of GO terms and gene lists included in the tissue restricted gene enrichment analysis. A total number of 105, 89, 85, 92, 81, 86, and 95 GO terms for WBSF, marbling, cooking loss, tenderness, juiciness, connective tissue, and flavor respectively, were included in the analysis. These sets of GO terms were analyzed provided a GO term prediction analysis for the list used as background with DAVID Bioinformatic Resources 6.8 server [112]. The gene lists used in this analysis show the stable gene ID from ensembl and the number of associated uncorrelated SNPs of each gene by trait. (XLS 534 kb)
DOI: 10.6084/m9.figshare.7755563.v1
title: Additional file 2: of Gene duplication and evolution in recurring polyploidizationâ diploidization cycles in plants

description: The detailed information of 141 plant species used in this study. (XLSX 76 kb)
DOI: 10.7284/113587
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1306 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755554
title: Additional file 12: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: List with 10,919 genes reported as expressed in bovine skeletal muscle by the EMBL-EBI Expression Atlas. A gene was considered as expressed in bovine skeletal muscle if it was present in E-MTAB-2798 or E-MTAB-2596 assays. This list was used as background list for the tissue restricted gene enrichment analysis. (XLS 875 kb)
DOI: 10.6084/m9.figshare.7755551
title: Additional file 4: of Epigenetic signatures associated with imprinted paternally expressed genes in the Arabidopsis endosperm

description: Table S5. Parent-of-origin RNAseq dataset of 4 DAP INTACT-purified endosperm of Col ร Ler reciprocal crosses. (XLSX 904 kb)
DOI: 10.6084/m9.figshare.7755554.v1
title: Additional file 12: of Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef

description: List with 10,919 genes reported as expressed in bovine skeletal muscle by the EMBL-EBI Expression Atlas. A gene was considered as expressed in bovine skeletal muscle if it was present in E-MTAB-2798 or E-MTAB-2596 assays. This list was used as background list for the tissue restricted gene enrichment analysis. (XLS 875 kb)
DOI: 10.6084/m9.figshare.7755551.v1
title: Additional file 4: of Epigenetic signatures associated with imprinted paternally expressed genes in the Arabidopsis endosperm

description: Table S5. Parent-of-origin RNAseq dataset of 4 DAP INTACT-purified endosperm of Col ร Ler reciprocal crosses. (XLSX 904 kb)
DOI: 10.7284/113585
title: Winch data collected during research cruise AE1306 using a Markey DUSH-5 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755545
title: Additional file 3: of Epigenetic signatures associated with imprinted paternally expressed genes in the Arabidopsis endosperm

description: Table S2. Seed coat expression of genes with maximum score (12) based on Additional file 2: Table S1. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.7755539
title: Additional file 2: of Epigenetic signatures associated with imprinted paternally expressed genes in the Arabidopsis endosperm

description: Table S1. Scores assigned to genes based on the presence of CHG methylation in the central cell as well as H3K9me2 and H3K27me3 on maternal alleles in the endosperm. (XLSX 1745 KB) (XLSX 1744 kb)
DOI: 10.6084/m9.figshare.7755545.v1
title: Additional file 3: of Epigenetic signatures associated with imprinted paternally expressed genes in the Arabidopsis endosperm

description: Table S2. Seed coat expression of genes with maximum score (12) based on Additional file 2: Table S1. (XLSX 45 kb)
DOI: 10.7284/113593
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AE1307 using a Hawaii UHDAS instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755539.v1
title: Additional file 2: of Epigenetic signatures associated with imprinted paternally expressed genes in the Arabidopsis endosperm

description: Table S1. Scores assigned to genes based on the presence of CHG methylation in the central cell as well as H3K9me2 and H3K27me3 on maternal alleles in the endosperm. (XLSX 1745 KB) (XLSX 1744 kb)
DOI: 10.7284/113594
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1307 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113591
title: Fluorometer data collected during research cruise AE1307 using a Turner 10-AU instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113592
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1307 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755506
title: Additional file 3: of Age-related variation in the oral microbiome of urban Cooperâ s hawks (Accipiter cooperii)

description: Table S2. Mock community, number of operons, and average reads observed for the even and staggered mock communities. Table containing details for each mock community. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.7755506.v1
title: Additional file 3: of Age-related variation in the oral microbiome of urban Cooperâ s hawks (Accipiter cooperii)

description: Table S2. Mock community, number of operons, and average reads observed for the even and staggered mock communities. Table containing details for each mock community. (XLSX 56 kb)
DOI: 10.7284/113590
title: Winch data collected during research cruise AE1307 using a Markey DUSH-5 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755500
title: Additional file 2: of Age-related variation in the oral microbiome of urban Cooperâ s hawks (Accipiter cooperii)

description: Table S1. Summary of operational taxonomic units for oral microbiome of urban Cooperâ s hawks. Excel file containing operational taxonomic units, taxonomy, and occurrence of each in individual hawks. (XLSX 115 kb)
DOI: 10.7284/113598
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AE1308 using a Hawaii UHDAS instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755500.v1
title: Additional file 2: of Age-related variation in the oral microbiome of urban Cooperâ s hawks (Accipiter cooperii)

description: Table S1. Summary of operational taxonomic units for oral microbiome of urban Cooperâ s hawks. Excel file containing operational taxonomic units, taxonomy, and occurrence of each in individual hawks. (XLSX 115 kb)
DOI: 10.7284/113599
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1308 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113596
title: Fluorometer data collected during research cruise AE1308 using a Turner 10-AU instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755164
title: EEGdata of motor imagery for stroke

description: This dataset is about motor imagery experiment for stroke patients. Every patient has the right one and left one in according to paretic hand movement or unaffected hand movement.
DOI: 10.7284/113597
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1308 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113595
title: Winch data collected during research cruise AE1308 using a Markey DUSH-5 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113603
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AE1309 using a Hawaii UHDAS instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755152
title: Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean

description: Supplementary files from this study including codes used for RNA-seq data processing, the transformed transcript abundance count for all the samples, the hierarchical clustering of top 6,000 variable genes, the correlation between the samples using the top 75% genes, and the four clusters for 6,000 variable genes.
DOI: 10.7284/113604
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1309 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755152.v1
title: Supplementary Files: Transcriptome profiling of interaction effects of soybean cyst nematodes (Tylenchida: Heteroderidae) and soybean aphids (Hemiptera: Aphididae) on soybean

description: Supplementary File 1: Codes used for RNA-seq data processing.Supplementary File 2: The raw transcript abundance count for all the samples.Supplementary File 3: The transformed transcript abundance count for all the samples.Supplementary File 4: The hierarchical clustering of top 6,000 variable genes.Supplementary File 5: The correlation between the samples using the top 75% genes.Supplementary File 6: The four clusters (A, B, C, and D) for 6,000 variable genes.
DOI: 10.7284/113601
title: Fluorometer data collected during research cruise AE1309 using a Turner 10-AU instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755107
title: Supplementary Tables

description: supplementary materials
DOI: 10.7284/113602
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1309 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755107.v2
title: Supplementary Tables

description: supplementary materials
DOI: 10.6084/m9.figshare.7755107.v1
title: Supplementary Tables

description: supplementary materials
DOI: 10.6084/m9.figshare.7755152.v2
title: Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean

description: Supplementary files from this study including codees used for RNA-seq data processing, the transformed transcript abundance count for all the samples, the hierarchical clustering of top 6,000 variable genes, the correlation between the samples using the top 75% genes, and the four clusters (A, B, C, and D) for 6,000 variable genes.
DOI: 10.6084/m9.figshare.7755077
title: Compiled

description: Dissection of ASD genes through evolution and genomic databases
DOI: 10.7284/113600
title: Winch data collected during research cruise AE1309 using a Markey DUSH-5 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7755077.v1
title: Compiled

description: Dissection of ASD genes through evolution and genomic databases
DOI: 10.7284/113608
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AE1310 using a Hawaii UHDAS instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113609
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1310 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.26180/5c6f4484cf8fd
title: Novel K-loci annotations from "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia."

description: Klebsiella pneumoniae species complex K-loci (capsule synthesis loci KL162-KL165. These loci were first identified among K. pneumoniae genomes reported in the manuscript:Wyres et al. Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia. 2019.<br>If you use these data please cite the manuscript.
DOI: 10.26180/5c6f44b7bb07e
title: Genome assemblies for "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia"

description: Klebsiella pneumoniae species complex genomes assembled from Illumina sequence read data using SPAdes optimised with Unicycler. Please see the manuscript for full details.<br>If you use these data please cite: Wyres et al. Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia. 2019.
DOI: 10.7284/113606
title: Fluorometer data collected during research cruise AE1310 using a Turner 10-AU instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition