cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25405/data.ncl.21588042.v9
title: Informing drug discovery: a systematic review of POLG-related disease models

description: Briefing. Overview of how the risk of bias was assessed<br>Supplementary Table 1A. PRISMA checklist<br>Supplementary Figure 1B. PRISMA flow diagram<br>Supplementary Table 2. Search strategy<br>Supplementary Table 3. Detailed article inclusion/exclusion criteria<br>Supplementary Table 4. Excluded full text articles<br>Supplementary Table 5. Data extracted from all included articles.<br>Supplementary Table 6A. The criteria for assessing reporting quality of each article.<br>Supplementary Table 6B. The assessment of the reporting quality of each article.<br>Supplementary Table 6C. The summarised Assessment of the reporting quality of each article.<br>Supplementary Table 6D. The assessment of risk of bias for each model system.<br>Updated versions are due to changes made during the review stages to ensure clarity of reporting.
DOI: 10.6084/m9.figshare.12431864.v3
title: Cerasus serrulata genome gff

description: it contains 29,094 genes<br>
DOI: 10.6084/m9.figshare.1295464.v1
title: Chikungunya Epidemic Data (extracted from PAHO)

description: Spreadsheet containing data on cumulative and suspected cumulative cases of chikungunya as well as deaths in 6 regions: North America, Central American Isthmus, Latin Caribbean, Andean Area, Southern Cone, and Non-Latin Caribbean.
DOI: 10.6084/m9.figshare.21903033.v2
title: A New Method for Postprocessing Numerical Weather Predictions

description: A New Method for Postprocessing Numerical Weather Predictions Using Quantile Mapping in the Frequency Domain
DOI: 10.6084/m9.figshare.28027751.v1
title: Plagiarism of Meta Analysis

description: Plagiarism
DOI: 10.6084/m9.figshare.4203255.v2
title: A computational study on the relation between resting heart rate and atrial fibrillation hemodynamics under exercise

description: A computational study on the relation between resting heart rate and atrial fibrillation hemodynamics under exercise, by M. Anselmino, S. Scarsoglio, A. Saglietto, F. Gaita, L. Ridolfi, PLoS ONE, 2017, 12(1): e0169967. doi:10.1371/journal.pone.0169967.<br><br>Raw data of simulations in normal sinus rhythm (NSR) and atrial fibrillation (AF) conditions are available.<br>
DOI: 10.6084/m9.figshare.12958115.v2
title: Estimation of radiation doses delivered by TGFs within leader-based production models

description: Data and results used for creating figures in the paper Estimation of radiation doses delivered by TGFs within leader-based production models
DOI: 10.6084/m9.figshare.21982205.v1
title: Supplementary Material for: Body composition predictors of complicated Crohn’s disease

description: Background: High visceral adipose tissue (VAT) and creeping fat (CrF) in Crohn's disease (CD) have been widely recognized. The VAT to subcutaneous adipose tissue (SAT) ratio and sarcopenia have been associated with CD complications. Studies regarding the influence of body composition predictors on CD complications assessed with magnetic resonance enterography (MRE) are scarce. Aim: Assessment of the body composition parameters and CrF in opportunistic MRE as predictors of complicated CD. Methods: This was a retrospective study of 114 patients with inflammatory (n = 54) and complicated (n = 60) CD. The semi-automated assessment of body composition and the qualitative evaluation of CrF were performed. Results: Body composition parameters did not differ between both groups regarding the body mass index (BMI) (p =0.50), total adipose tissue index (TATI) (p =0.14), subcutaneous adipose tissue index (SATI) (p =0.17), visceral adipose tissue index (VATI) (p =0.33), VAT/SAT ratio (p =0.77), intramuscular adipose tissue (IMAT) (p =0.64), skeletal muscle index (SMI) (p =0.22), and sarcopenia (p =0.50). 47 strictures, 18 fistulae, and seven abscesses were identified. Fistulae were more likely to occur in patients with CrF (odds ratio [OR] 5.07, 95% confidence interval [CI] 1.76–14.56; p=&lt;0.001) and high VAT/SAT ratio (OR: 3.82, 95% CI 1.34–10.85; p=0.01). Conclusion: Body composition measurements in CD patients displayed no statistically significant difference between the groups of inflammatory and complicated disease. Nonetheless, CD patients stratified in the group of high VAT/SAT ratio and the presence of CrF should be recognized as risk groups for the occurrence of fistulae.
DOI: 10.6084/m9.figshare.23681373.v1
title: DEPMAP measured CRISPR effect

description: DEPMAP measured gene effect from DEPMAP portal
DOI: 10.6084/m9.figshare.26325310.v1
title: <i>Pseudomonas</i> sp. HOU2 predicted gene sequences

description: These whole genome of Pseudomonas sp. HOU2 were analyzed by RAST (Rapid Annotation using Subsystem Technology) (https://rast.nmpdr.org/) on 18 July 2024 with the following selected options to get the predicted HOU2 gene sequences. Genetic code: 11Annotation scheme: RASTtkPreserve gene calls: noAutomatically fix errors: yesFix frameshifts: yesBackfill gaps: yes<br>NCBI Sequence Read Archive of Pseudomonas sp. HOU2 is SRR29666724 (https://www.ncbi.nlm.nih.gov/sra/SRR29666724)NCBI complete genome of Pseudomonas sp. HOU2 is CP160398.1 (https://www.ncbi.nlm.nih.gov/nuccore/CP160398)
DOI: 10.6084/m9.figshare.7352966.v1
title: Single Cell Genomic Assemblies

description: Single Cell Genomic Assemblies
DOI: 10.17632/fs7bmf665v
title: Web accessibility data of Chilean universities

description: The objective of this paper is to show the data obtained from an analysis of higher education institutions in Chile.
DOI: 10.6084/m9.figshare.16529178.v1
title: Sea island cotton_GWAS _VCFs_project

description: In GWAS research on 336 sea island cotton accessions, high-quality SNPs (depth≥4 (1/3 of the average depth), map quality≥20, the missing ratio of samples within the population≤of of 20% (4,052,759 SNPs) , and minor allele frequency (MAF) &gt;0.05) were retained for GWAS analyses.
DOI: 10.6084/m9.figshare.21076408.v1
title: Dance for Parkinson's. A dataset of a Greek pilot clinical trial.

description: This dataset (from clinical trial: Effects of a structured dance program in Parkinson’s disease. A Greek pilot study) includes raw data extracted from 16 early-to-mid-stage Parkinson's disease patients that met the inclusion criteria for the pilot clinical trial. Clinical assessments of quality of life (Parkinson's Disease Questionnaire-8), depressive symptoms (Beck Depression Inventory-II), fatigue (Parkinson Fatigue Scale-16), cognitive functions (Montreal Cognitive Assessment), balance (Berg Balance Scale), and body mass index (kg/m2) performed before (baseline) and after the sixteen 60-min dance (Dance for Parkinson's®) intervention of 8 weeks (2/w).
DOI: 10.6084/m9.figshare.25003334.v1
title: Supplementary Material for: Mental health of school-aged children treated with propranolol or atenolol for infantile hemangioma and their parents

description: Background: Infants with infantile hemangioma (IH) have been effectively treated with propranolol or atenolol. Concerns were raised about the mental health of these children at school-age, due to central nervous system effects of propranolol and visible nature of IH. 

Objective: This study aimed to compare the mental health at school-age of children treated with propranolol to children treated with atenolol for IHs, and their parents. 

Methods: This two-center cross-sectional study included children aged ≥6 years and treated with either propranolol or atenolol for IH during infancy. Children’s outcomes were performance-based affect recognition (NEPSY-II-NL), and parent-reported emotional and behavioral functioning (CBCL), and health-related quality of life (KIDSCREEN-27). Parents’ outcome was parenting stress (OBVL). 

Results: Data of 105 children (36 propranolol, 69 atenolol; 6.0 to 11.8 years) were analyzed. Mental health outcomes did not differ between both beta-blocker groups. Although overall functioning was in line with norms, children presented specific problems concerning affect recognition, and parent-reported attention and social quality of life. Parents showed increased physical symptoms, depressive symptoms, and parent-child relationship problems. 

Conclusion: No difference in mental health at school-age was found between children treated with propranolol or atenolol for IH. Although few overall mental health problems were found, specific problems require follow-up. Follow-up of children should be directed towards affect recognition, attention, and social functioning in daily life. Problems reported by parents could be ameliorated by mental health support during and after their infant’s beta-blocker treatment.
DOI: 10.6084/m9.figshare.26300194.v1
title: Self-regulation in EFL learners

description: An important concern of research on self-regulated learning is to determine themost effective methods for its instruction in different educational settings. Thisquasi-experimental study focuses on a 10-week intervention designed to developself-regulation in undergraduate students learning English as a foreign languageduring emergency remote teaching. Levels of self-regulation and engagementwere measured with a pre and post-test and control group design. Findingsrevealed that the intervention, as implemented in the study, was successfulin raising self-regulated learning and in participants’ recognizing the practicalutility of tools acquired. On the other hand, while the level of engagementremained similar after the intervention, this was seen as a protective effect of theteaching-learning strategy on motivational states. This research underscores theimportance of self-regulated learning training in higher education to allow forstudents’ autonomy and agency, as well as connectedness with instructors andpeers, especially during the harsh teaching conditions of sanitary confinement.
DOI: 10.6084/m9.figshare.19534285.v2
title: Metadata of soils in Spartina alterniflora salt marshes and their adjacent mudflats along coastlines of China

description: 407 soil samples from 12 sites were collected along the coastlines of China. Soil physicochemical properties were measured according to standard procedures, and climatic conditions were obtained from WorldClim version 2 (https://www.worldclim.org/) at 30 arc-second resolutions.
DOI: 10.6084/m9.figshare.27854868.v1
title: <b><i>Punctaria latifolia</i></b><b> as a new source of alginate: structural characteristics and biological activity</b>

description: FT-IR and NMR database of sodium alginate Alextracted from <i>Punctaria latifolia</i> Greville 1830 (Phaeophyceae, Chordariaceae)
DOI: 10.17632/dk62nfft5y
title: Clinical Pregnancy Outcome in Fresh IVF/ICSI Treatment Between Cleavage-stage (Day 3) and Blastocyst-stage (Day 5) Embryo Transfer in Post Ovarian Stimulated Patient: A Single-Centre Retrospective Analysis.

description: The data were retrieved from the electronic medical records of 302 patients who had fresh embryo transfers between 2018 and June 2023
DOI: 10.6084/m9.figshare.14115644.v1
title: 2050 GF45 MaxEnt Model Inputs for TX Fire Occurrence Model

description: These are the model inputs for the Maxent SDM used to generate fire occurrence prediction maps. The climate data are representative of the GF45 climate scenario in 2050. When running the Maxent model, we used 135,000 background points, and used 20% of the occurrence points for model validation.
DOI: 10.17632/w22g2k4t2n
title: Major and trace element concentrations and Ni isotope compositions of carbonates from the Great Bahama Bank and carbonate diagenesis model parameters

description: We aimed to evaluate the fidelity of shallow-water carbonates as records of the Ni isotope composition of surface seawater. We first must know how Ni isotopes initially partition upon incorporation into carbonates and how early marine diagenesis (i.e., meteoric or marine diagenesis, dolomitization) alters the primary Ni signature. We measured the Ni isotope compositions and major and trace element concentrations of primary and diagenetically altered shallow-water carbonates from the Great Bahama Bank, a modern carbonate platform. The carbonates representing primary deposition are from short cores (collection described in Hardisty et al. 2017) and carbonates representing different types of diagenesis are from ODP cores, Clino and Unda (collection described in Eberli et al. 1997). Major and trace element concentrations were measured using ICP-MS. Ni isotope compositions were measured using either a Neptune or Nu III MC-ICP-MS, and instrumental mass fractionation was corrected using the double-spike technique as described in Siebert et al. (2001). We also modeled a simple diagenetic process (aragonite to calcite neomorphism under an open system), following Banner and Hanson (1990), to determine how the Ni isotope composition of diagenetically altered carbonate changes with diagenetic indicators (e.g., C isotope compositions). Model parameters are provided. We found that primary carbonates are fractionated from coexisting seawater (1.7‰, based on similar latitude and similar depth seawater; Lemaitre et al. 2022) by ~0.4‰. Only carbonates that experienced marine diagenesis, either with minimal alteration or alteration under sediment-buffered conditions, appear to preserve the primary carbonate Ni isotope signature. Our modeling supports this interpretation. Such carbonates hold promise as records of the Ni isotope composition of seawater.
DOI: 10.6084/m9.figshare.7314692.v1
title: MAST nuclear NAD contigs

description: MAST nuclear NAD contigs
DOI: 10.6084/m9.figshare.22046813.v1
title: PVCTS2020v2_part.tif

description: completed area for PVCTS2020 map (competed but not yet fully verified. Full map will be released following comprehensive accuracy assessment). Note: unlike other products in series, this product only goes through 2020 (not 2021). Classification key and methods are otherwise the same as previous maps in the series and can be found in accompanying documentation.
DOI: 10.6084/m9.figshare.22771015.v1
title: Association Between HLA Polymorphisms and Sympathetic Ophthalmia in Han Chinese

description: Sympathetic ophthalmia (SO) is considered as an autoimmune disease with unclear mechanisms. This study investigated the relationship between HLA polymorphisms and SO. HLA typing was performed using the LABType reverse SSO DNA typing method. The allele and haplotype frequencies were assessed using the PyPop software. Statistical significance of genotype distributions between 116 patients and 84 healthy individuals (control) was determined using Fisher’s exact test or Pearson's chi-squared test. The SO group had a higher frequency of <i>HLA-DRB1 * 04:05</i>, <i>HLA-DQB1</i> * 04:01, <i>DRB1 * 04:05-DQB1 * 04:01 haplotype</i>   as compared to the control group (Pc &lt; 0.001 for all). This study revealed that <i>DRB1 * 04:05</i> and <i>DQB1 </i>*<i> 04:01</i> alleles, as well as <i>DRB1 * 04:05-DQB1 * 04:01</i> haplotye could be potential risk factors for SO.
DOI: 10.6084/m9.figshare.27896358.v1
title: <b>Improving in-situ spectral estimation of wetland soil organic carbon by integrating multiple optimization strategies_V1</b>

description: Carbon in wetlands is a critical component of the terrestrial carbon pool in the global carbon cycle. Accurate quantification of wetland soil organic carbon (SOC) is essential for sustainable wetland management and climate change mitigation. However, this effort is often hampered by the inaccessibility of wetlands and high economic and labor costs associated with data acquisition. The advent of visible and near–infrared (Vis-NIR) spectroscopy offers a time- and cost-effective method for monitoring SOC content. Considerable efforts have been directed toward estimating wetland SOC using Vis-NIR spectroscopy. However, great differences were reported for the performance of different predictive strategies. This study aims to improve the in-situ spectral estimation accuracy of wetland SOC by testing and evaluating 240 optimization strategies which integrate different pre-treatment technologies, moisture removal algorithms, spectral feature selection methods.
DOI: 10.6084/m9.figshare.13283933.v1
title: X-ray microCT of tomato stems from healthy plants and plants infected with Ralstonia (a bacterial wilt pathogen). Dataset 2: Excised Stem experiment.

description: Full resolution X-ray micro CT reconstructions of tomato stems from healthy plants and plants infected with Ralstonia (a bacterial wilt pathogen). <br><br><br>The first file has information on how to interpret the image and it notes some of the reconstruction artefacts that are visible in the images. <br><br>Subsequently, the composite supplemental figures are present. These figures show low resolution versions of each of the samples and are organized by condition:<br>1. <b>H</b>1-<b>H</b>14: <b>H</b>ealthy Stems<br>2. <b>1G</b>1-<b>1G</b>12: <i>Ralstonia</i> <b>GMI1000</b> infected stems <b>1 dpi </b>(10^4 cfu inoculum)3. 2<b>G</b>1-<b>2G</b>12<i> Ralstonia</i> <b>GMI1000 </b>infected stems 2 dpi (10^4 cfu inoculum)<br>4. 2h<b>G</b>1-<b>2hG</b>12: <i>Ralstonia</i> <b>GMI1000 </b>infected stems<b> 2 dpi </b>(High inoculum: 10^6 cfu)<br><br>Each high resolution cross-section is labeled with the sample ID in the file name. Other values refer to values used to reconstruct the 3D images with the tomopy script. <br>* Importantly, some images required multiple <i>center of rotation (COR)</i> values to reconstruct different regions of the stem in focus. (Multiple <i>CORs </i>were necessary because the sample continued to dry/shrink during the scan, so the center of rotation changed over time). For instance sample H2 required 5 different COR values to get different vascular bundles in focus. Refer to the "How to interpret" file to see which regions are in focus on each of the high resolution images. <br><br>Raw data is available upon request. Each sample is ~2-10 Gb, and we could not find a public database to deposit the data into. <br><br>To add:-Link to BioRxiv<br><br>
DOI: 10.6084/m9.figshare.9108491.v1
title: Laporte et al. 2019

description: Data repository for publication, data backup
DOI: 10.6084/m9.figshare.c.3615806_d5.v1
title: Additional file 4: Table S3. of Single-cell analysis of long non-coding RNAs in the developing human neocortex

description: Related to Figure S1. Table of novel lncRNAs not annotated in Ensembl release 75. Gene names and coordinates are in BED format. These lncRNAs were the set of novel lncRNAs annotated in the polyA full reference, which includes both multi-exon and single exon lncRNAs. (XLS 1429 kb)
DOI: 10.6084/m9.figshare.26549638.v1
title: Supplementary Material for: Pancreatoduodenectomy for cholangiocarcinoma during second trimester of pregnancy: case report and review of literature

description: Introduction
Cholangiocarcinoma during pregnancy is an extremely rare entity with poor prognosis. Limited data are available regarding the diagnosis, progression, and pregnancy-related outcomes.
Case presentation
We present a case of mid to distal cholangiocarcinoma diagnosed by endosonographically guided biopsy during pregnancy at 15 weeks of gestation. Pregnancy termination was considered but based on multidisciplinary team and shared decision making, surgery was performed during pregnancy. The patient underwent pancreatoduodenectomy with radical resection at 17 weeks of gestation. The postoperative period was complicated by a grade B postoperative pancreatic fistula treated by antibiotics only. At 39 weeks of gestation, a caesarean section was performed and a healthy boy was delivered. 
Conclusion
Decision making on to perform a pancreatoduodenectomy in pregnant patients is challenging. This case report is the first to report on successful pancreatoduodenectomy during pregnancy for extrahepatic cholangiocarcinoma. Moreover, this case highlights the second trimester as favorable period for surgical intervention and the importance of close follow-up and diagnostic assessment of pregnant patients with unexplained and persistent abnormal liver function tests.
DOI: 10.17632/3jjcry73th
title: Green Bonds_Wind2023
DOI: 10.6084/m9.figshare.13625204.v1
title: NNU.representativeGeneModels.cds

description: CDS for genes with complete ORFs nelumbo.biocloud.net<br>
DOI: 10.6084/m9.figshare.28790909.v1
title: Dados retirados do Instagram acerca dos perfis dos periódicos de Acesso Aberto da área de Ciência da Informação

description: Os dados coletados objetivam compreender como periódicos científicos de Acesso Aberto na área da Ciência da Informação, a nível global, utilizam o Instagram como ferramenta de divulgação científica, com foco na presença digital, na gestão dos perfis e nas estratégias de comunicação adotadas. Trata-se de uma pesquisa aplicada, de abordagem quantitativa e objetivo descritivo, na qual foram analisados 198 periódicos indexados na <i>Directory of Open Access Journals</i>. A coleta de dados envolveu a identificação de perfis ativos no Instagram, com a finalidade de mapear a presença institucional e caracterizar os tipos de perfil, bem como os países de origem dos periódicos. Os resultados revelam que apenas 19, 20% dos periódicos analisados possuem perfis ativos na plataforma, sendo a maioria composta por contas próprias, geridas diretamente pelos periódicos. Brasil e Estados Unidos se destacam quanto à quantidade de periódicos com presença no Instagram, indicando uma maior adesão à comunicação científica digital nesses países. Os achados sugerem uma apropriação ainda tímida da rede social pelos periódicos da área, destacando a necessidade de estratégias mais eficazes e integradas para potencializar o uso do Instagram como canal de disseminação científica para os periódicos de Acesso Aberto da área de Ciência da Informação.
DOI: 10.6084/m9.figshare.4958687.v2
title: Dataset for Plant diversity effect on water quality in wetlands: a meta-analysis based on experimental systems

description: published in Ecological Applications
DOI: 10.34740/kaggle/dsv/13364233
title: World Weather Repository ( Daily Updating )
DOI: 10.15468/dl.dh8mj7
title: Occurrence Download

description: A dataset containing 307 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pachycephalopsis poliosoma Sharpe, 1882)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 307 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295706-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgyw39
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Achimenes candida Lindl."
 ]
}

 The dataset includes 138 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0296979-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shsvtg
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oncidium tenuoides M.W.Chase & N.H.Williams"
 ]
}

 The dataset includes 14 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052258-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqtp54
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acalypha oblancifolia Lundell"
 ]
}

 The dataset includes 11 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295713-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.