cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3611759_d1.v1
title: Additional file 10: Table S6. of Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population

description: Differentially expressed genes in heads. Table includes all genes surviving a genomewide FDR threshold of 5 %. Refer to the legend for Additional file 9: Table S5 for details of the columns. (TXT 197 kb)
DOI: 10.6084/m9.figshare.c.3611774_d1.v1
title: Additional file 1: Table S1. of Maximum basal FSH predicts reproductive outcome better than cycle-specific basal FSH levels: waiting for a â  better" month conveys limited retrieval benefits

description: Clinical parameters for patients with and without a history of FSH elevation. Cycle data were categorized by presence or absence of elevated current FSH, Max FSH or PMax FSH (&gt;13 mIU/mL) at the time of the cycle and stratified by age group. Incomplete (cancelled) cycles were excluded. Number of cycles with data for each parameter were noted. P-value comparisons were calculated between the elevated and non-elevated groups by t-test. Significance was noted as *** (p&lt;0.001), ** (p&lt;0.01) or * (p&lt;0.05). (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3611777_d1.v1
title: Additional file 4: of Rare intronic variants of TCF7L2 arising by selective sweeps in an indigenous population from Mexico

description: Primer used to sequencing of TCF7L2 gene exons. (TXT 3.24 kb)
DOI: 10.6084/m9.figshare.c.3611759_d12.v1
title: Additional file 7: Table S4. of Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population

description: Aging candidate genes extracted from FlyBase. The “FBgn”, “CG”, “GeneName”, and “Symbol” columns provide details on the gene ID. The “CytologicalLocation”, “Chr”, “PosMin_R6”, and “PosMax_R6” provide the position of the gene (R6 refers to release 6 of the D. melanogaster reference annotation), and “Strand” provides the orientation of the gene in the genome. The final “VocabCode” column includes a multiple digit code indicating which controlled vocabulary (CV) search term(s) the gene is associated with (see Additional file 6 for the codes); For instance, “179” in this column means the gene is associated with the CV terms “aging”, “premature aging”, and “short lived”. (TXT 44 kb)
DOI: 10.6084/m9.figshare.c.3611780_d11.v1
title: Additional file 8: Table S4. of The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1

description: Summary of the differential exon usage analysis for each pairwise comparison. FvM: females vs males, PvM: proestrus vs males, DvM: diestrus vs males, PvD: proestrus vs diestrus. (XLSX 36690 kb)
DOI: 10.6084/m9.figshare.c.3611789_d8.v1
title: Additional file 7: Table S1. of Metazoans of redoxcline sediments in Mediterranean deep-sea hypersaline anoxic basins

description: From the supplemental images of loriciferans, which can be found at the Woods Hole Open Access Server (WHOAS) at http://dx.doi.org/ 10.1575/1912/7550 . Mapping files linking sample IDs (deep-sea hypersaline anoxic basin and habitat) to sequence IDs found at https://trace.ddbj.nig.ac.jp/DRASearch/study?acc=SRP049010 . (XLS 6 kb)
DOI: 10.6084/m9.figshare.c.3611780_d13.v1
title: Additional file 13: Table S6. of The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1

description: Report of the full results of the transcription factor enrichment analysis performed using the enrichR tool on the DEG in each pairwise comparison. (XLSX 117 kb)
DOI: 10.6084/m9.figshare.c.3611780_d14.v1
title: Additional file 4: Table S2. of The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1

description: Summary of all statistical values for the real-time PCR and western blotting data presented in Additional file 3: Figure S2. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3611759_d15.v1
title: Additional file 15: Table S7. of Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population

description: RNAseq candidates within mapped QTL. The “QTL” column refers to the five QTL mapped in this study (see Table 1), and “FBgn”, “GeneSymbol”, “Cytological”, “Position_R6”, all give information on the gene. The “RNAseq_Expt” column states which study the gene was found to be differentially expressed in, “Contrast” gives the statistical test in which the gene was identified, and “ExpressionResult” gives the direction of the expression change. The “AgingCandidate” column states whether the gene is a known aging gene (see Table 2), and the “RNAseqOverlap” column gives the number of array-based expression studies identifying the gene as showing an age-related change in gene expression. (TXT 5 kb)
DOI: 10.6084/m9.figshare.c.3611837_d2.v1
title: Additional file 2: of Evidence for the presence of African swine fever virus in an endemic region of Western Kenya in the absence of any reported outbreak

description: GenBank Accession Numbers. GenBank (http://www.ncbi.nlm.nih.gov/genbank/) Accession numbers for twenty ASFV isolates for which genotypic analysis was performed. (XLSX 11 kb)
DOI: 10.23668/psycharchives.3151
title: Data sets for: Design of Paper-Based Visual Analogue Scale Items

description: Data sets for: Weigl, K., & Forstner, T. (2020). Design of Paper-Based Visual Analogue Scale Items. Educational and Psychological Measurement, 1-17. https://doi.org/10.1177/0013164420952118.
description: Paper-based visual analogue scales (VAS) items were developed 100 years ago. Although they gained great popularity in clinical and medical research for assessing pain, they have been scarcely applied in other areas of psychological research for several decades. However, since the beginning of digitization, VAS have attracted growing interest among researchers for carrying out computerized and paper-based data assessments. In the present study, we investigated the research question which different design characteristics of paper-based VAS items are preferred by women and men. Based on a sample of 115 participants (68 female), our results revealed that the respondents preferred a paper-based VAS item with a horizontal, 8 cm long, 3 DTP („data point“) wide, black line, with flat line endpoints, and the ascending numerical anchors “0” and “10”, both for women and men. Although we did not identify any gender difference in these characteristics, our findings uncovered clear preferences on how to design paper-based VAS items.
DOI: 10.6084/m9.figshare.c.3611849_d5.v1
title: MOESM4 of Conversion of nanoscale topographical information of cluster-assembled zirconia surfaces into mechanotransductive events promotes neuronal differentiation

description: Additional file 4: Table S1. Proteomic data for upregulated proteins. Proteins upregulated (compared to flat-Zr) or present only in cells grown on ns-Zr15. Adhesome proteins and proteins with roles in mechanobiological processes are marked in dark and light grey, respectively.
DOI: 10.15468/dl.h42846
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-39.64833 23.77422,-1.93771 23.77422,-1.93771 51.32536,-39.64833 51.32536,-39.64833 23.77422))",
 "TaxonKey is Dolopichthys jubatus Regan & Trewavas, 1932"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037547-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3611918_d2.v1
title: MOESM1 of Genome-wide Escherichia coli stress response and improved tolerance towards industrially relevant chemicals

description: Additional file 1. Â Differential gene expression values for each chemical stress condition compared to the control condition.
DOI: 10.6084/m9.figshare.c.3611936_d1.v1
title: Additional file 1: of A survey of tandem repeat instabilities and associated gene expression changes in 35 colorectal cancers

description: This file contains 3 supplemental tables. (XLSX 263 kb)
DOI: 10.6084/m9.figshare.c.3611918_d3.v1
title: MOESM2 of Genome-wide Escherichia coli stress response and improved tolerance towards industrially relevant chemicals

description: Additional file 2. Â Enrichment or depletion of gene transposon mutants under chemical stress conditions.
DOI: 10.6084/m9.figshare.c.3611999_d2.v1
title: Additional file 1 of Nonlinear mixed-effects modelling for single cell estimation: when, why, and how to use it

description: Supporting data. A zip-file containing the datasets used in the analysis, MATLAB-files, NONMEM-files, and Monolix-files equivalent to the ones used in the analysis, as well as a mini-tutorial of how to use Monolix. (ZIP 1761 kb)
DOI: 10.6084/m9.figshare.c.3611996_d3.v1
title: Additional file 5: of Mechanisms of sex determination and transmission ratio distortion in Aedes aegypti

description: The accession numbers of the RRM sequences: [GenBank: KJ147314, KJ147315, KJ147316, KJ147317, KJ147318, KJ147319, KJ147320, KJ147321]. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3612026_d1.v1
title: Additional file 1: of Outcome of 2Â cc pure sulfur hexafluoride gas tamponade for macular hole surgery

description: Raw data. (XLSX 19 kb)
DOI: 10.23668/psycharchives.3162
title: Dataset for: The effect of explaining on people’s perception of their own knowledge and of experts’ knowledge

description: When individuals read science news articles, they usually gain new yet shallow knowledge. Previous scientific work points to feelings of overconfidence, which may be moderated by a failure to provide a detailed explanation of a phenomenon. We investigated how participants (N = 155) perceived their own and scientists’ knowledge about a scientific topic before and after they either read or read and explained an online science article. Regardless the kind of engagement, ratings of participants’ own knowledge before and after engagement were significantly lower than the ratings of scientists’ knowledge, meanwhile ratings of own and scientists’ knowledge significantly increased in both groups. The group which provided (simplified) explanations reported a significantly higher reliance on themselves in comparison to the group only reading. Even though additional communicative act of explaining may not contribute to more productive strategies for dealing with science, the distinction between individuals and experts’ knowledge seem to prevail.
description: Dataset for: Nina Vaupotič, Dorothe Kienhues & Regina Jucks (2022) Gaining insight through explaining? How generating explanations affects individuals’ perceptions of their own and of experts’ knowledge, International Journal of Science Education, Part B, 12:1, 42-59, DOI: 10.1080/21548455.2021.2018627
DOI: 10.6084/m9.figshare.c.3612044_d7.v1
title: Additional file 7 of A statistical approach to detection of copy number variations in PCR-enriched targeted sequencing data

description: Final reports on CNVs analysis of whole dataset by CONVector. Tab delimited xls files with final reports of CONVector and short summary of calls. (ZIP 42.1 kb)
DOI: 10.6084/m9.figshare.c.3612044_d8.v1
title: Additional file 2 of A statistical approach to detection of copy number variations in PCR-enriched targeted sequencing data

description: Description of Panels. xlsx file with bed files, containing: targetâ  s chromosome, start coordinate, end coordinate, id of target, targetâ  s region (exonic or intronic). (XLSX 27.6 kb)
DOI: 10.6084/m9.figshare.c.3612044_d9.v1
title: Additional file 3 of A statistical approach to detection of copy number variations in PCR-enriched targeted sequencing data

description: Description of Datasets. xlsx file with description of experiments: panel used for sequencing, internal id of experiment, number of samples within the experiment, laboratory where sequencing was performed, Average Robust Variance (absulte measure of noise, described in CONVectorâ  s documentation), number of detected CNVs. (XLSX 9.74 kb)
DOI: 10.6084/m9.figshare.c.3612077_d2.v1
title: Additional file 2: Table S4. of Selective sweeps versus introgression - population genetic dynamics of the murine leukemia virus receptor Xpr1 in wild populations of the house mouse (Mus musculus)

description: Phasing of Xpr1 haplotypes per individual. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.c.3612080_d2.v1
title: Additional file 1: of Activating clinical trials: a process improvement approach

description: Process duration data for the trials included in the study. (XLSX 83 kb)
DOI: 10.6084/m9.figshare.c.3612101_d1.v1
title: MOESM1 of Fluorescence multispectral imaging-based diagnostic system for atherosclerosis

description: Additional file 1. Â Raw and analyzed data.
DOI: 10.6084/m9.figshare.c.3612107_d2.v1
title: Additional file 1: of Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae

description: Table S1. Samples included in the phylogenomic and population genomic analyses. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3612110_d1.v1
title: MOESM2 of Rare MLL-ELL fusion transcripts in childhood acute myeloid leukemiaâ  association with young age and myeloid sarcomas?

description: Additional file 2: Table S1. Fusion transcripts detected using FusionCatcher.
DOI: 10.6084/m9.figshare.c.3612170_d1.v1
title: Additional file 8: of Molecular mechanism of ethylene stimulation of latex yield in rubber tree (Hevea brasiliensis) revealed by de novo sequencing and transcriptome analysis

description: DEGs involved in the Calvin cycle in E8 and E24 compared to C samples of Hevea brasiliensis. (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3612170_d2.v1
title: Additional file 7: of Molecular mechanism of ethylene stimulation of latex yield in rubber tree (Hevea brasiliensis) revealed by de novo sequencing and transcriptome analysis

description: DEGs involved in the IPP biosynthesis in E8 and E24 compared to C samples of Hevea brasiliensis. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3612170_d3.v1
title: Additional file 4: of Molecular mechanism of ethylene stimulation of latex yield in rubber tree (Hevea brasiliensis) revealed by de novo sequencing and transcriptome analysis

description: Pathways significantly enriched of DEGs (C vs. E-8, and C vs. E-24). (XLS 196 kb)
DOI: 10.6084/m9.figshare.c.3612170_d4.v1
title: Additional file 5: of Molecular mechanism of ethylene stimulation of latex yield in rubber tree (Hevea brasiliensis) revealed by de novo sequencing and transcriptome analysis

description: DEGs involved in the glycolysis in E8 and E24 compared to C samples of Hevea brasiliensis. (XLS 59 kb)
DOI: 10.6084/m9.figshare.c.3612170_d12.v1
title: Additional file 1: of Molecular mechanism of ethylene stimulation of latex yield in rubber tree (Hevea brasiliensis) revealed by de novo sequencing and transcriptome analysis

description: Summary of functional annotations of unigenes by aligning to the Nr, Nt, Swiss-Prot, COG, GO and KEGG databases. (XLS 24813 kb)
DOI: 10.6084/m9.figshare.c.3612209_d4.v1
title: Additional file 5: Table S5. of Molecular alterations induced by a high-fat high-fiber diet in porcine adipose tissues: variations according to the anatomical fat location

description: Complete list of key upstream regulators proposed in response to diets in perirenal adipose tissue and associated biological processes. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3612197_d7.v1
title: Additional file 1: of Contrasting biological potency of particulate matter collected at sites impacted by distinct industrial sources

description: Metal composition of all size-fractionated particles. Table of metal content according to particle size and sampling site. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3612203_d6.v1
title: MOESM7 of Global changes in the proteome of Cupriavidus necator H16 during poly-(3-hydroxybutyrate) synthesis from various biodiesel by-product substrates

description: Additional file 7: Table S5. Highly expressed proteins (up- or down-regulated) in C. necator H16 grown with REG-GB in comparison to REG-FFA and REG-80 at 24 h pi.
DOI: 10.6084/m9.figshare.c.3612209_d5.v1
title: Additional file 6: Table S6. of Molecular alterations induced by a high-fat high-fiber diet in porcine adipose tissues: variations according to the anatomical fat location

description: Complete list of key upstream regulators proposed in response to diets in subcutaneous adipose tissue and associated biological processes. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3612197_d9.v1
title: Additional file 2: of Contrasting biological potency of particulate matter collected at sites impacted by distinct industrial sources

description: PAH composition of all size-fractionated particles. Table of PAH content according to particle size and sampling site. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3612209_d7.v1
title: Additional file 4: Table S4. of Molecular alterations induced by a high-fat high-fiber diet in porcine adipose tissues: variations according to the anatomical fat location

description: Detail list of genes associated with different biological process within a small interconnected module in perirenal adipose tissue of pigs fed a high-fat high-fiber diet. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3612293_d2.v1
title: Additional file 1: of Transcriptome analysis of smooth cordgrass (Spartina alterniflora Loisel), a monocot halophyte, reveals candidate genes involved in its adaptation to salinity

description: The comparative analysis among Spartina alterniflora reads with reads of Salterniflora [34] and unigenes of S. pectinata [78]. (XLSX 154Â kb)
DOI: 10.6084/m9.figshare.c.3612293_d3.v1
title: Additional file 4: Table S2. of Transcriptome analysis of smooth cordgrass (Spartina alterniflora Loisel), a monocot halophyte, reveals candidate genes involved in its adaptation to salinity

description: Simple sequence repeats (SSRs), flanking primers and their predicted location in Spartina alterniflora unigenes. (XLSX 357Â kb)
DOI: 10.6084/m9.figshare.c.3612305_d1.v1
title: Additional file 3: of Dietary nitrogen alters codon bias and genome composition in parasitic microorganisms

description: Sheet 1: Accession numbers and corresponding orthogroups for all kinetoplastid species used in this analysis. Sheet 2: Accession numbers for the genes required for arginine and amino sugar metabolism in the Mollicutes. Sheet 3: The model was run on the dataset of orthologous genes (as described in the “Inference of orthogroups and construction of multiple sequence alignments” section in the “Methods”) and it was also run separately on all complete coding sequences. A complete coding sequence was considered as any coding sequence with start and stop codons whose length was divisible by 3 and longer than 30 nucleotides. This sheet shows the parameters obtained for each of the LN, MN and HN groups for both the Mollicutes and kinetoplastid parasites. Highlighted in yellow are the parameters obtained for the original two-parameter model that only considers selection acting on nitrogen content in coding sequences and mutation bias. Highlighted in green are the values obtained for the three-parameter model, which also considers selection acting on translational efficiency (tAI). The model parameters that produce the highest log likelihood values and the lowest AIC values are the best fit to the observed data. Sheet 4: Genome locations, nitrogen use and aligned sequences for Mollicutes 5S, 16S and 23S rRNA. Total nitrogen used in rRNA per 70S ribosome is given in the top left corner. Sheet 5: Genome locations, nitrogen use and aligned sequences for kinetoplastid 5.8S, 18S, 23S alpha and 23S beta rRNA. Total nitrogen used in rRNA per 80S ribosome is given in the top left corner. Sheet 6: Accession numbers for the genes required for arginine and amino sugar metabolism in the Mollicutes. (XLSX 639 kb)
DOI: 10.6084/m9.figshare.c.3612329_d6.v1
title: Additional file 2: Table S1. of Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

description: Metadata of 2522 completely sequenced bacterial genomes comprising of 2666 chromosomes and 1926 plasmids analysed in this study. (XLSX 331Â kb)
DOI: 10.6084/m9.figshare.c.3612347_d1.v1
title: MOESM1 of Genetic diversity of lactase persistence in East African populations

description: Additional file 1: Table S1. Genomic Data.
DOI: 10.6084/m9.figshare.c.3612350_d2.v1
title: Additional file 4: of Combined genetic effects of EGLN1 and VWF modulate thrombotic outcome in hypoxia revealed by Ayurgenomics approach

description: Total scores of protective alleles in combined genotypes of VWF and EGLN1 in CEPHâ  HGDP population.
DOI: 10.6084/m9.figshare.c.3612350_d4.v1
title: Additional file 2: of Combined genetic effects of EGLN1 and VWF modulate thrombotic outcome in hypoxia revealed by Ayurgenomics approach

description: Total scores of protective alleles in combined genotypes of VWF and EGLN1 in Prakriti types.
DOI: 10.6084/m9.figshare.c.3612350_d5.v1
title: Additional file 3: of Combined genetic effects of EGLN1 and VWF modulate thrombotic outcome in hypoxia revealed by Ayurgenomics approach

description: Total scores of protective alleles in combined genotypes of VWF and EGLN1 in high altitude and a genetically related low altitude population in India.
DOI: 10.6084/m9.figshare.c.3612374_d1.v1
title: Additional file 1: Table S1. of 
                     De novo transcriptome sequencing in Bixa orellana to identify genes involved in methylerythritol phosphate, carotenoid and bixin biosynthesis

description: BLASTX comparison between the B. orellana transcriptome against three databases. Table S2. BLASTN comparison between the B. orellana transcriptome and the previous EST library created by Jako and co-workers [GenBank: LIBEST_025681 BIXA]. Table S3. Gene Ontology (GO) annotation. Table S4. Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation. Table S5. Pairwise comparison between amino acid sequences of carotenoid cleavage dioxygenase proteins. Table S6. RT-qPCR primers. Table S7. BLASTx comparison between the B. orellana transcriptome and previously identified B. orellana proteins .Table S8. Subcellular localization predictions for the BoCCD, BoALDH and BoSABATH proteins. Table S9. Accession number of proteins used in Fig. 1. (ZIP 15364 kb)
DOI: 10.6084/m9.figshare.c.3612374_d2.v1
title: Additional file 2: Figure S1. of 
                     De novo transcriptome sequencing in Bixa orellana to identify genes involved in methylerythritol phosphate, carotenoid and bixin biosynthesis

description: Evolutionary relationship of CCDs proteins. Figure S2. Evolutionary relationship of ALDH proteins. Figure S3. Evolutionary relationship of SABATH methyltransferases proteins. Figure S4. Evolutionary relationship of DXS proteins. (ZIP 410 kb)
DOI: 10.6084/m9.figshare.c.3612413_d6.v1
title: Additional file 4: Table S1. of A tissue-specific protein purification approach in Caenorhabditis elegans identifies novel interaction partners of DLG-1/Discs large

description: All proteins identified, organized by tissue examined. (XLSX 118 kb)
DOI: 10.6084/m9.figshare.c.3612440_d1.v1
title: MOESM1 of Application of fundamental equations to speciesâ  area theory

description: Additional file 1. For power law model, sensitivity analysis of parameters was conducted for EAR, extinction rate and overlap index, and the extinction rate based on different total areas was assessed for overestimate comparison.
DOI: 10.6084/m9.figshare.c.3612443_d1.v1
title: Additional file 2: Table S2. of Is genotyping of single isolates sufficient for population structure analysis of Pseudomonas aeruginosa in cystic fibrosis airways?

description: Species ratios in metagenomes. All species presented have been detected in &gt;0.5 % of the bacterial reads of at least one metagenomic sample, if a species is detected with &lt;0.01 % it is shown here as 0.00 %. (XLSX 47 kb)