cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48370/ofd/ddp8rv
title: Hyphoderma setigerum (Fr.) Donk, 730

description: Fungarium Macromycetes
DOI: 10.48370/ofd/gefhjn/oks4re
title: FMW Hyphoderma setigerum (Fr.) Donk M-5041.JPG

description: :unav
DOI: 10.48370/ofd/gefhjn/730bqa
title: FMW Hyphoderma setigerum (Fr.) Donk M-5041 (3).JPG

description: :unav
DOI: 10.48370/ofd/gefhjn/ti0m4f
title: FMW Hyphoderma setigerum (Fr.) Donk M-5041 (2).JPG

description: :unav
DOI: 10.48370/ofd/gefhjn
title: Hyphoderma setigerum (Fr.) Donk, 5041

description: Fungarium Macromycetes
DOI: 10.48370/ofd/laukqv/mbqgmp
title: FMW Hyphodontia alutaria (Burt) J. Erikss M-2331 (2).JPG

description: :unav
DOI: 10.48370/ofd/laukqv/tvh36p
title: FMW Hyphodontia alutaria (Burt) J. Erikss M-2331 (3).JPG

description: :unav
DOI: 10.48370/ofd/laukqv/2pusqq
title: FMW Hyphodontia alutaria (Burt) J. Erikss M-2331.JPG

description: :unav
DOI: 10.48370/ofd/poynf7/qgs31p
title: FMW Hyphodontia alutaria (Burt) J. Erikss M-3826 (2).JPG

description: :unav
DOI: 10.48370/ofd/laukqv
title: Hyphodontia alutaria (Burt) J.Erikss., 2331

description: Fungarium Macromycetes
DOI: 10.48370/ofd/poynf7/fbccu7
title: FMW Hyphodontia alutaria (Burt) J. Erikss M-3826.JPG

description: :unav
DOI: 10.48370/ofd/poynf7/yfr2nl
title: FMW Hyphodontia alutaria (Burt) J. Erikss M-3826 (3).JPG

description: :unav
DOI: 10.48370/ofd/poynf7
title: Hyphodontia alutaria (Burt) J.Erikss., 3826

description: Fungarium Macromycetes
DOI: 10.48370/ofd/urpnpd/5g2fle
title: FMW Hyphodontia arguta (Fr.) J. Erikss. M-3796.JPG

description: :unav
DOI: 10.48370/ofd/urpnpd/kemhxj
title: FMW Hyphodontia arguta (Fr.) J. Erikss. M-3796 (2).JPG

description: :unav
DOI: 10.48370/ofd/8zb3v0/ahout9
title: FMW Hyphodontia arguta (Fr.) J. Erikss. M-2328.JPG

description: :unav
DOI: 10.48370/ofd/urpnpd
title: Hyphodontia arguta (Fr.) J.Erikss., 3796

description: Fungarium Macromycetes
DOI: 10.48370/ofd/8zb3v0/v3f63b
title: FMW Hyphodontia arguta (Fr.) J. Erikss. M-2328 (2).JPG

description: :unav
DOI: 10.48370/ofd/8zb3v0/i69axb
title: FMW Hyphodontia arguta (Fr.) J. Erikss. M-2328 (3).JPG

description: :unav
DOI: 10.48370/ofd/8zb3v0
title: Hyphodontia arguta (Fr.) J.Erikss., 2328

description: Fungarium Macromycetes
DOI: 10.5281/zenodo.6472289
title: Dataset to "Legendre-Fenchel transforms capture layering transitions in porous media"

description: This is the dataset presented in the article "Legendre-Fenchel transforms capture layering transitions in porous media" [1]. This dataset contains three files, "isobaric_compression.csv", "isobaric_expansion.csv", and "isometric.csv". The columns are the same in each file. They are flow left to right Temperature Standard deviation of the temperature Number of fluid particles Normal pressure Standard deviation of the normal pressure Height Standard deviation of the height Potential energy Standard deviation of the potential energy Kinetic energy Standard deviation of the kinetic energy [1] https://doi.org/10.1039/D1NA00846C
DOI: 10.5281/zenodo.6472288
title: Dataset to "Legendre-Fenchel transforms capture layering transitions in porous media"

description: This is the dataset presented in the article "Legendre-Fenchel transforms capture layering transitions in porous media" [1]. This dataset contains three files, "isobaric_compression.csv", "isobaric_expansion.csv", and "isometric.csv". The columns are the same in each file. They are flow left to right Temperature Standard deviation of the temperature Number of fluid particles Normal pressure Standard deviation of the normal pressure Height Standard deviation of the height Potential energy Standard deviation of the potential energy Kinetic energy Standard deviation of the kinetic energy [1] https://doi.org/10.1039/D1NA00846C
DOI: 10.6084/m9.figshare.19772536.v1
title: data for the research of trait judgments

description: the data for dyadic interaction across online chatting and face-to-face conversation
DOI: 10.48370/ofd/dbienp/qklmyb
title: FMW Hyphodontia pallidula (Bres.) J. Erikss M-1972.JPG

description: :unav
DOI: 10.48370/ofd/dbienp/o00eks
title: FMW Hyphodontia pallidula (Bres.) J. Erikss M-1972 (2).JPG

description: :unav
DOI: 10.48370/ofd/dbienp
title: Hyphodontia pallidula (Bres.) J.Erikss, 1972

description: Fungarium Macromycetes
DOI: 10.48370/ofd/bmuuf2/lyoymj
title: FMW Hyphodontia pallidula (Bres.) J. Erikss M-1972.JPG

description: :unav
DOI: 10.48370/ofd/bmuuf2/ace7qb
title: FMW Hyphodontia pallidula (Bres.) J. Erikss M-1972 (2).JPG

description: :unav
DOI: 10.48370/ofd/bmuuf2
title: Hyphodontia pallidula (Bres.) J.Erikss, 1972

description: Fungarium Macromycetes
DOI: 10.6084/m9.figshare.19772536.v2
title: data for the research of trait judgments

description: the data for trait judgments across online chatting and face-to-face conversation
DOI: 10.48370/ofd/hjpbfp/88kyf8
title: FMW Hyphodontia pallidula (Bres.) J. Erikss M-0636 (3).JPG

description: :unav
DOI: 10.48370/ofd/ghugzr/ixthz9
title: FMW Hyphodontia pallidula (Bres.) J. Erikss M-4611 (2).JPG

description: :unav
DOI: 10.48370/ofd/hjpbfp/lioh7u
title: FMW Hyphodontia pallidula (Bres.) J. Erikss M-0636.JPG

description: :unav
DOI: 10.48370/ofd/ghugzr/muwyw2
title: FMW Hyphodontia pallidula (Bres.) J. Erikss M-4611.JPG

description: :unav
DOI: 10.48370/ofd/hjpbfp/pjgkfk
title: FMW Hyphodontia pallidula (Bres.) J. Erikss M-0636 (2).JPG

description: :unav
DOI: 10.48370/ofd/itneof/ew9sf2
title: FMW Hyphodontia pallidula (Bres.) J. Erikss M-4063.JPG

description: :unav
DOI: 10.6084/m9.figshare.3993774
title: Accumulation of nodularin in New Zealand shortfin eel (<i>Anguilla australis</i>): potential consequences for human consumption

description: The native <i>Anguilla australis</i> (shortfin eel) is a culturally significant species for indigenous Māori populations of New Zealand. At Lake Forsyth/Te Wairewa (Canterbury), local Māori have depended on <i>A. australis</i> as a source of mahinga kai (traditional food) for centuries. This lake experiences blooms of <i>Nodularia spumigena</i> and the associated hepatotoxin nodularin has been detected in water samples. This study aimed to determine if nodularin accumulated in <i>A. australis</i>, and whether levels posed a health risk for human consumption. The maximum concentrations of <i>N. spumigena</i> and nodularin detected in lake water samples were 240 × 10<sup>6</sup> cells/mL and 91,000 µg/L, respectively. Nodularin was detected in the liver and muscle of eels (max. 147 µg/kg in liver and 29 µg/kg in muscle). One muscle sample exceeded the recommended levels for safe human consumption of nodularin in fish (24 μg/kg).
DOI: 10.7910/dvn/v1rjpf/ozsqee
title: snk20161209_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/mq3bi8
title: snk20160910_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/uruoak
title: snk20150924_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/6piify
title: snk20150809_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/roksbk
title: snk20161218_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/rzhvov
title: snk20150214_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/m2zfwe
title: snk20150814_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/j0y2mc
title: snk20160215_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/crawhr
title: snk20150228_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/xzrgha
title: snk20160229_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/ns19ud
title: snk20150514_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/grzix5
title: snk20150317_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/lfoipl
title: snk20150910_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3990582
title: Awareness of OER/OEP in Colleges in Scotland

description: The Open Educational Practices in Scotland (OEPS) Project conducted a survey to find out about the level of awareness of open educational resources (OER) and open educational practices (OEP) among college staff in Scotland. In total 236 valid responses were collected in a seven-week period from February 1<sup>st</sup>, 2016 to March 20<sup>th</sup>, 2016.
DOI: 10.6084/m9.figshare.3990582.v1
title: Awareness of OER/OEP in Colleges in Scotland

description: The Open Educational Practices in Scotland (OEPS) Project conducted a survey to find out about the level of awareness of open educational resources (OER) and open educational practices (OEP) among college staff in Scotland. In total 236 valid responses were collected in a seven-week period from February 1<sup>st</sup>, 2016 to March 20<sup>th</sup>, 2016.
DOI: 10.7910/dvn/v1rjpf/gznjmb
title: snk20161222_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3990528
title: Quadrat Field Study on Plants

description: This data set was taken on 5 Oct 2016 at 9:30 on the Haverhill Campus at Northern Essex in the grassland field. The data was taken a total of 12 times and the transects used were randomly acquired using a random number generator. Two numbers were randomly chosen, the first number being the X variable and the second number the Y variable for how many paces along the grassland and how many paces into the grassland we should walk. The numbers ranged from 1-75 paces. At each transect, a quadrat was placed down and whatever plant species that was in that quadrat was recorded, the number of that specific plant species was recorded, the total cover of each plant (each quadrat would add up to 100%, and whether or not each specific species was a type of grass. This was done to randomly acquire data on the types of plants in the grassland and what kind of plant made up the most percentage of the quadrat by comparing the spacial distribution and the different kind of species of plants at different areas of the grassland.
DOI: 10.7910/dvn/v1rjpf/fcemw2
title: snk20160708_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3990528.v1
title: Quadrat Field Study on Plants

description: This data set was taken on 5 Oct 2016 at 9:30 on the Haverhill Campus at Northern Essex in the grassland field. The data was taken a total of 12 times and the transects used were randomly acquired using a random number generator. Two numbers were randomly chosen, the first number being the X variable and the second number the Y variable for how many paces along the grassland and how many paces into the grassland we should walk. The numbers ranged from 1-75 paces. At each transect, a quadrat was placed down and whatever plant species that was in that quadrat was recorded, the number of that specific plant species was recorded, the total cover of each plant (each quadrat would add up to 100%, and whether or not each specific species was a type of grass. This was done to randomly acquire data on the types of plants in the grassland and what kind of plant made up the most percentage of the quadrat by comparing the spacial distribution and the different kind of species of plants at different areas of the grassland.
DOI: 10.7910/dvn/v1rjpf/0wtjay
title: snk20161030_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3990438
title: MinION nanopore Fail and Pass reads for Urine5 sample

description: Oxford Nanopore MinION fast5 file datasets of Fail and Pass reads for Urine5 sample, that represent reads from that sample with significant blast hits to Proteobacterial sequences.<br>Reads were analysed using processes described in Journal of Antimicrobial chemotherapy doi:10.1093/jac/dkw397 and by scripts described and placed in Crossman L. Github repository.<br><br><br>
DOI: 10.6084/m9.figshare.3990438.v1
title: MinION nanopore Fail and Pass reads for Urine5 sample

description: Oxford Nanopore MinION fast5 file datasets of Fail and Pass reads for Urine5 sample, that represent reads from that sample with significant blast hits to Proteobacterial sequences.<br>Reads were analysed using processes described in Journal of Antimicrobial chemotherapy doi:10.1093/jac/dkw397 and by scripts described and placed in Crossman L. Github repository.<br><br><br>
DOI: 10.7910/dvn/v1rjpf/tnwuho
title: snk20150427_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3990423
title: Supplementary Material for: Gastric Cancer Patients with High PLK1 Expression and DNA Aneuploidy Correlate with Poor Prognosis

description: Gastric cancer is the fourth most common cancer worldwide. Although it is important to identify patients at high risk for a poor outcome, factors correlating with prognosis in gastric cancer are largely unknown. Here, we focus on the correlations among expression of Polo-like kinase 1 (PLK1), DNA ploidy, and clinical outcome in gastric cancer patients. Gastric cancer specimens were analyzed from 207 consecutive patients. Patients were classified into two groups according to tumor PLK1 expression and DNA content, and an analysis of their clinical outcomes was carried out. Prognoses of patients with PLK1-high tumors were worse than those of patients with PLK1-low tumors, but the differences were not statistically significant. In cell lines, overexpression of PLK1 induced centrosome amplification and multipolar spindles, potentially leading to DNA aneuploidy. Indeed, high expression of PLK1 was also associated with DNA aneuploidy in clinical gastric cancer specimens. Patients with both high PLK1 expression and DNA aneuploidy had poor recurrence-free survival, whereas PLK1 expression and DNA ploidy status alone were not significantly associated with outcome. Here, we provide clinical evidence that high expression of PLK1 could have detrimental effects in tumors with DNA aneuploidy, which may increase the risk of recurrence in gastric cancer patients.
DOI: 10.7910/dvn/v1rjpf/plytdv
title: snk20160720_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3990420
title: Classification of biodegradable materials using QSAR modelling with uncertainty estimation<sup>§</sup>

description: The ability to determine the biodegradability of chemicals without resorting to expensive tests is ecologically and economically desirable. Models based on quantitative structure–activity relations (QSAR) provide some promise in this direction. However, QSAR models in the literature rarely provide uncertainty estimates in more detail than aggregated statistics such as the sensitivity and specificity of the model’s predictions. Almost never is there a means of assessing the uncertainty in an individual prediction. Without an uncertainty estimate, it is impossible to assess the trustworthiness of any particular prediction, which leaves the model with a low utility for regulatory purposes. In the present work, a QSAR model with uncertainty estimates is used to predict biodegradability for a set of substances from a publicly available data set. Separation was performed using a partial least squares discriminant analysis model, and the uncertainty was estimated using bootstrapping. The uncertainty prediction allows for confidence intervals to be assigned to any of the model’s predictions, allowing for a more complete assessment of the model than would be possible through a traditional statistical analysis. The results presented here are broadly applicable to other areas of modelling as well, because the calculation of the uncertainty will clearly demonstrate where additional tests are needed.
DOI: 10.6084/m9.figshare.3990417
title: Supplementary Material for: Two Patients with Severe Short Stature due to a FBN1 Mutation (p.Ala1728Val) with a Mild Form of Acromicric Dysplasia

description: <b><i>Background:</i></b> Acromicric dysplasia (AD) and geleophysic dysplasia 2 (GD2) belong to the category of acromelic dysplasia syndromes, consisting of severe short stature, short hands and feet and skin thickening. Both can result from missense mutations in the transforming growth factor beta 5 domain of the fibrillin-1 gene <i>(FBN1)</i>. <b><i>Methods:</i></b> Two patients (P1 age 10, and P2 age 7) from unrelated families presented to their endocrinologist with severe short stature (approx. -4 SDS). They were otherwise asymptomatic and only had mild facial dysmorphisms. Extensive endocrine work-up did not reveal an underlying etiology. Exome sequencing was performed in each family. <b><i>Results:</i></b> Exome sequencing identified the presence of the same heterozygous missense variant c.C5183T (p.Ala1728Val) in the <i>FBN1</i> gene in both P1 and P2. This variant was previously reported in a patient with GD2 and associated cardiac valvulopathy and hepatomegaly. Detailed clinical re-examination, cardiac and skeletal imaging did not reveal any abnormalities in P1 or P2 other than mild hip dysplasia. <b><i>Conclusion:</i></b> This report broadens the phenotypic spectrum of growth disorders associated with <i>FBN1</i> mutations. Identical mutations give rise to a wide phenotypic spectrum, ranging from isolated short stature to a more classic picture of GD2 with cardiac involvement, distinct facial dysmorphisms and various skeletal anomalies.
DOI: 10.6084/m9.figshare.3990423.v1
title: Supplementary Material for: Gastric Cancer Patients with High PLK1 Expression and DNA Aneuploidy Correlate with Poor Prognosis

description: Gastric cancer is the fourth most common cancer worldwide. Although it is important to identify patients at high risk for a poor outcome, factors correlating with prognosis in gastric cancer are largely unknown. Here, we focus on the correlations among expression of Polo-like kinase 1 (PLK1), DNA ploidy, and clinical outcome in gastric cancer patients. Gastric cancer specimens were analyzed from 207 consecutive patients. Patients were classified into two groups according to tumor PLK1 expression and DNA content, and an analysis of their clinical outcomes was carried out. Prognoses of patients with PLK1-high tumors were worse than those of patients with PLK1-low tumors, but the differences were not statistically significant. In cell lines, overexpression of PLK1 induced centrosome amplification and multipolar spindles, potentially leading to DNA aneuploidy. Indeed, high expression of PLK1 was also associated with DNA aneuploidy in clinical gastric cancer specimens. Patients with both high PLK1 expression and DNA aneuploidy had poor recurrence-free survival, whereas PLK1 expression and DNA ploidy status alone were not significantly associated with outcome. Here, we provide clinical evidence that high expression of PLK1 could have detrimental effects in tumors with DNA aneuploidy, which may increase the risk of recurrence in gastric cancer patients.
DOI: 10.7910/dvn/v1rjpf/0gwgsi
title: snk20160916_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3990417.v1
title: Supplementary Material for: Two Patients with Severe Short Stature due to a FBN1 Mutation (p.Ala1728Val) with a Mild Form of Acromicric Dysplasia

description: <b><i>Background:</i></b> Acromicric dysplasia (AD) and geleophysic dysplasia 2 (GD2) belong to the category of acromelic dysplasia syndromes, consisting of severe short stature, short hands and feet and skin thickening. Both can result from missense mutations in the transforming growth factor beta 5 domain of the fibrillin-1 gene <i>(FBN1)</i>. <b><i>Methods:</i></b> Two patients (P1 age 10, and P2 age 7) from unrelated families presented to their endocrinologist with severe short stature (approx. -4 SDS). They were otherwise asymptomatic and only had mild facial dysmorphisms. Extensive endocrine work-up did not reveal an underlying etiology. Exome sequencing was performed in each family. <b><i>Results:</i></b> Exome sequencing identified the presence of the same heterozygous missense variant c.C5183T (p.Ala1728Val) in the <i>FBN1</i> gene in both P1 and P2. This variant was previously reported in a patient with GD2 and associated cardiac valvulopathy and hepatomegaly. Detailed clinical re-examination, cardiac and skeletal imaging did not reveal any abnormalities in P1 or P2 other than mild hip dysplasia. <b><i>Conclusion:</i></b> This report broadens the phenotypic spectrum of growth disorders associated with <i>FBN1</i> mutations. Identical mutations give rise to a wide phenotypic spectrum, ranging from isolated short stature to a more classic picture of GD2 with cardiac involvement, distinct facial dysmorphisms and various skeletal anomalies.
DOI: 10.6084/m9.figshare.3990405
title: Supplementary Material for: Effect of Heme Oxygenase-1 Deficiency on Glomerular Proteomics

description: <b><i>Background:</i></b> The cytoprotective effect of heme oxygenase (HO)-1 in various forms of renal glomerular injury is established. However, little is known on the role of HO-1 in preserving glomerular structural/functional integrity in the absence of injury. The present study addressed this question in HO-1-deficient rats. <b><i>Methods:</i></b> HO-1-deficient rats were generated using zinc finger nuclease-mediated HO-1 gene (<i>Hmox1</i>) disruption and studied. Glomeruli were isolated from HO-1-deficient (<i>Hmox1</i><sup>-/-</sup>) rats and their wild type (WT) littermates for proteomic analysis. <b><i>Results:</i></b> Glomerular lesions were characterized and differentially expressed proteins important for preserving integrity of the glomerular filtration barrier were identified. HO-1-deficient (<i>Hmox1</i><sup>-/-</sup>) rats developed albuminuria with decreased glomerular filtration rate. In albuminuric rats, there were lesions resembling focal and segmental glomerulosclerosis (FSGS). Western blot analysis of the integral slit diaphragm proteins, nephrin and podocin revealed a significant decrease in nephrin, with no change in podocin. Proteomic analysis of glomerular protein lysates from <i>Hmox1</i><sup>-/-</sup> and WT rats revealed differential expression of proteins previously linked with FSGS pathogenesis. Specifically, α-actinin-4, actin related protein 3, cytokeratins and novel candidates including transgelin-2 and lamins. Bioinformatic analysis predicted the upregulation of pathways implicated in platelet aggregation and fibrin clot formation. <b><i>Conclusion:</i></b> HO-1 is a putative regulator of proteins important in preserving glomerular structural stability and integrity, and in minimizing the activity of proinflammatory pathways.
DOI: 10.6084/m9.figshare.3990420.v1
title: Classification of biodegradable materials using QSAR modelling with uncertainty estimation<sup>§</sup>

description: The ability to determine the biodegradability of chemicals without resorting to expensive tests is ecologically and economically desirable. Models based on quantitative structure–activity relations (QSAR) provide some promise in this direction. However, QSAR models in the literature rarely provide uncertainty estimates in more detail than aggregated statistics such as the sensitivity and specificity of the model’s predictions. Almost never is there a means of assessing the uncertainty in an individual prediction. Without an uncertainty estimate, it is impossible to assess the trustworthiness of any particular prediction, which leaves the model with a low utility for regulatory purposes. In the present work, a QSAR model with uncertainty estimates is used to predict biodegradability for a set of substances from a publicly available data set. Separation was performed using a partial least squares discriminant analysis model, and the uncertainty was estimated using bootstrapping. The uncertainty prediction allows for confidence intervals to be assigned to any of the model’s predictions, allowing for a more complete assessment of the model than would be possible through a traditional statistical analysis. The results presented here are broadly applicable to other areas of modelling as well, because the calculation of the uncertainty will clearly demonstrate where additional tests are needed.
DOI: 10.7910/dvn/v1rjpf/mf5zoz
title: snk20151011_03.txt.gz

description: :unav