cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5793081
title: Additional file 2: of Soybean MADS-box gene GmAGL1 promotes flowering via the photoperiod pathway

description: Transcriptome data. (XLSX 10026 kb)
DOI: 10.6084/m9.figshare.5793081.v1
title: Additional file 2: of Soybean MADS-box gene GmAGL1 promotes flowering via the photoperiod pathway

description: Transcriptome data. (XLSX 10026 kb)
DOI: 10.6084/m9.figshare.5793153
title: Additional file 1: of Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

description: The DEGs using a cutoff of fold-change â Ľ1.5 in both comparisons of 42 and 90 d between thigh and breast tissues. (XLS 154 kb)
DOI: 10.6084/m9.figshare.5793153.v1
title: Additional file 1: of Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

description: The DEGs using a cutoff of fold-change â Ľ1.5 in both comparisons of 42 and 90 d between thigh and breast tissues. (XLS 154 kb)
DOI: 10.6084/m9.figshare.5793171
title: Additional file 2: of Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

description: The biological process of enriched GO terms based on 515 DEGs. (XLS 516 kb)
DOI: 10.6084/m9.figshare.5793171.v1
title: Additional file 2: of Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

description: The biological process of enriched GO terms based on 515 DEGs. (XLS 516 kb)
DOI: 10.6084/m9.figshare.5793189
title: Additional file 3: of Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

description: The DEGs related to lipid metabolism in both comparisons of 42 and 90 d between thigh and breast tissues. (XLS 55 kb)
DOI: 10.6084/m9.figshare.5793189.v1
title: Additional file 3: of Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

description: The DEGs related to lipid metabolism in both comparisons of 42 and 90 d between thigh and breast tissues. (XLS 55 kb)
DOI: 10.6084/m9.figshare.5793213
title: Additional file 4: of Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

description: The common DEGs involved in two pathways (ECM-receptor interaction and Focal adhesion) in this study. (XLS 40 kb)
DOI: 10.6084/m9.figshare.5793213.v1
title: Additional file 4: of Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

description: The common DEGs involved in two pathways (ECM-receptor interaction and Focal adhesion) in this study. (XLS 40 kb)
DOI: 10.6084/m9.figshare.5793228
title: Additional file 5: of Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

description: The specific primers for q-PCR in this study. (XLS 57 kb)
DOI: 10.6084/m9.figshare.5793228.v1
title: Additional file 5: of Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

description: The specific primers for q-PCR in this study. (XLS 57 kb)
DOI: 10.6084/m9.figshare.5793342
title: Additional file 10: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Fig.Â 4. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.5793342.v1
title: Additional file 10: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Fig.Â 4. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.5793354
title: Additional file 11: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Fig.Â 5. (XLSX 101 kb)
DOI: 10.6084/m9.figshare.5793354.v1
title: Additional file 11: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Fig.Â 5. (XLSX 101 kb)
DOI: 10.6084/m9.figshare.5793372
title: Additional file 12: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Fig.Â 6eâ h. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5793372.v1
title: Additional file 12: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Fig.Â 6eâ h. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5793387
title: Additional file 13: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Additional file 3: Figure S2. (XLSX 259 kb)
DOI: 10.6084/m9.figshare.5793387.v1
title: Additional file 13: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Additional file 3: Figure S2. (XLSX 259 kb)
DOI: 10.6084/m9.figshare.5793411
title: Additional file 14: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Additional file 5: Figure S3. (XLSX 88 kb)
DOI: 10.6084/m9.figshare.5793411.v1
title: Additional file 14: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Additional file 5: Figure S3. (XLSX 88 kb)
DOI: 10.6084/m9.figshare.5793519
title: Additional file 8: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Fig.Â 2. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.5793519.v1
title: Additional file 8: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Fig.Â 2. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.5793531
title: Additional file 9: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Fig.Â 3a,b. (XLSX 86 kb)
DOI: 10.6084/m9.figshare.5793531.v1
title: Additional file 9: of A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578

description: Numeric data for Fig.Â 3a,b. (XLSX 86 kb)
DOI: 10.6084/m9.figshare.5793588
title: Macrophage polarization and activation at the interface of multi-walled carbon nanotube-induced pulmonary inflammation and fibrosis

description: Pulmonary exposure to carbon nanotubes (CNTs) induces fibrosing lesions in the lungs that manifest rapid-onset inflammatory and fibrotic responses, leading to chronic fibrosis in animals and health concerns in exposed humans. The mechanisms underlying CNT-induced fibrogenic effects remain undefined. Macrophages are known to play important roles in immune regulation and fibrosis development through their distinct subsets. Here we investigated macrophage polarization and activation in mouse lungs exposed to multi-walled CNTs (MWCNTs). Male C57BL/6J mice were treated with MWCNTs (XNRI MWNT-7) at 40 μg per mouse (∼1.86 mg/kg body weight) by oropharyngeal aspiration. The treatment stimulated prominent acute inflammatory and fibrotic responses. Moreover, it induced pronounced enrichment and polarization of macrophages with significantly increased M1 and M2 populations in a time-dependent manner. Induction of M1 polarization was apparent on day 1 with a peak on day 3, but declined rapidly thereafter. On the other hand, the M2 polarization was induced on day 1 modestly, but was remarkably elevated on day 3 and maintained at a high level through day 7. M1 and M2 macrophages were functionally activated by MWCNTs as indicated by the expression of their distinctive functional markers, such as iNOS and ARG1, with time courses parallel to M1 and M2 polarization, respectively. Molecular analysis revealed MWCNTs boosted specific STAT and IRF signaling pathways to regulate M1 and M2 polarization in the lungs. These findings suggest a new mechanistic connection between inflammation and fibrosis induced by MWCNTs through the polarization and activation of macrophages during MWCNT-induced lung pathologic response.
DOI: 10.6084/m9.figshare.5793588.v1
title: Macrophage polarization and activation at the interface of multi-walled carbon nanotube-induced pulmonary inflammation and fibrosis

description: Pulmonary exposure to carbon nanotubes (CNTs) induces fibrosing lesions in the lungs that manifest rapid-onset inflammatory and fibrotic responses, leading to chronic fibrosis in animals and health concerns in exposed humans. The mechanisms underlying CNT-induced fibrogenic effects remain undefined. Macrophages are known to play important roles in immune regulation and fibrosis development through their distinct subsets. Here we investigated macrophage polarization and activation in mouse lungs exposed to multi-walled CNTs (MWCNTs). Male C57BL/6J mice were treated with MWCNTs (XNRI MWNT-7) at 40 μg per mouse (∼1.86 mg/kg body weight) by oropharyngeal aspiration. The treatment stimulated prominent acute inflammatory and fibrotic responses. Moreover, it induced pronounced enrichment and polarization of macrophages with significantly increased M1 and M2 populations in a time-dependent manner. Induction of M1 polarization was apparent on day 1 with a peak on day 3, but declined rapidly thereafter. On the other hand, the M2 polarization was induced on day 1 modestly, but was remarkably elevated on day 3 and maintained at a high level through day 7. M1 and M2 macrophages were functionally activated by MWCNTs as indicated by the expression of their distinctive functional markers, such as iNOS and ARG1, with time courses parallel to M1 and M2 polarization, respectively. Molecular analysis revealed MWCNTs boosted specific STAT and IRF signaling pathways to regulate M1 and M2 polarization in the lungs. These findings suggest a new mechanistic connection between inflammation and fibrosis induced by MWCNTs through the polarization and activation of macrophages during MWCNT-induced lung pathologic response.
DOI: 10.6084/m9.figshare.5793588.v2
title: Macrophage polarization and activation at the interface of multi-walled carbon nanotube-induced pulmonary inflammation and fibrosis

description: Pulmonary exposure to carbon nanotubes (CNTs) induces fibrosing lesions in the lungs that manifest rapid-onset inflammatory and fibrotic responses, leading to chronic fibrosis in animals and health concerns in exposed humans. The mechanisms underlying CNT-induced fibrogenic effects remain undefined. Macrophages are known to play important roles in immune regulation and fibrosis development through their distinct subsets. Here we investigated macrophage polarization and activation in mouse lungs exposed to multi-walled CNTs (MWCNTs). Male C57BL/6J mice were treated with MWCNTs (XNRI MWNT-7) at 40 μg per mouse (∼1.86 mg/kg body weight) by oropharyngeal aspiration. The treatment stimulated prominent acute inflammatory and fibrotic responses. Moreover, it induced pronounced enrichment and polarization of macrophages with significantly increased M1 and M2 populations in a time-dependent manner. Induction of M1 polarization was apparent on day 1 with a peak on day 3, but declined rapidly thereafter. On the other hand, the M2 polarization was induced on day 1 modestly, but was remarkably elevated on day 3 and maintained at a high level through day 7. M1 and M2 macrophages were functionally activated by MWCNTs as indicated by the expression of their distinctive functional markers, such as iNOS and ARG1, with time courses parallel to M1 and M2 polarization, respectively. Molecular analysis revealed MWCNTs boosted specific STAT and IRF signaling pathways to regulate M1 and M2 polarization in the lungs. These findings suggest a new mechanistic connection between inflammation and fibrosis induced by MWCNTs through the polarization and activation of macrophages during MWCNT-induced lung pathologic response.
DOI: 10.6084/m9.figshare.5795001
title: Separation of brown carbon from black carbon for IMPROVE and Chemical Speciation Network PM<sub>2.5</sub> samples

description: The replacement of the Desert Research Institute (DRI) model 2001 with model 2015 thermal/optical analyzers (TOAs) results in continuity of the long-term organic carbon (OC) and elemental carbon (EC) database, and it adds optical information with no additional carbon analysis effort. The value of multiwavelength light attenuation is that light absorption due to black carbon (BC) can be separated from that of brown carbon (BrC), with subsequent attribution to known sources such as biomass burning and secondary organic aerosols. There is evidence of filter loading effects for the 25% of all samples with the highest EC concentrations based on the ratio of light attenuation to EC. Loading corrections similar to those used for the seven-wavelength aethalometer need to be investigated. On average, nonurban Interagency Monitoring of PROtected Visual Environments (IMPROVE) samples show higher BrC fractions of short-wavelength absorption than urban Chemical Speciation Network (CSN) samples, owing to greater influence from biomass burning and aged aerosols, as well as to higher primary BC contributions from engine exhaust at urban sites. Sequential samples taken during an Everglades National Park wildfire demonstrate the evolution from flaming to smoldering combustion, with the BrC fraction increasing as smoldering begins to dominate the fire event. <i>Implications</i>: The inclusion of seven wavelengths in thermal/optical carbon analysis of speciated PM<sub>2.5</sub> (particulate matter with an aerodynamic diameter ≤2.5 μm) samples allows contributions from biomass burning and secondary organic aerosols to be estimated. This separation is useful for evaluating control strategy effectiveness, identifying exceptional events, and determining natural visibility conditions.
DOI: 10.6084/m9.figshare.5795001.v2
title: Separation of brown carbon from black carbon for IMPROVE and Chemical Speciation Network PM<sub>2.5</sub> samples

description: The replacement of the Desert Research Institute (DRI) model 2001 with model 2015 thermal/optical analyzers (TOAs) results in continuity of the long-term organic carbon (OC) and elemental carbon (EC) database, and it adds optical information with no additional carbon analysis effort. The value of multiwavelength light attenuation is that light absorption due to black carbon (BC) can be separated from that of brown carbon (BrC), with subsequent attribution to known sources such as biomass burning and secondary organic aerosols. There is evidence of filter loading effects for the 25% of all samples with the highest EC concentrations based on the ratio of light attenuation to EC. Loading corrections similar to those used for the seven-wavelength aethalometer need to be investigated. On average, nonurban Interagency Monitoring of PROtected Visual Environments (IMPROVE) samples show higher BrC fractions of short-wavelength absorption than urban Chemical Speciation Network (CSN) samples, owing to greater influence from biomass burning and aged aerosols, as well as to higher primary BC contributions from engine exhaust at urban sites. Sequential samples taken during an Everglades National Park wildfire demonstrate the evolution from flaming to smoldering combustion, with the BrC fraction increasing as smoldering begins to dominate the fire event. <i>Implications</i>: The inclusion of seven wavelengths in thermal/optical carbon analysis of speciated PM<sub>2.5</sub> (particulate matter with an aerodynamic diameter ≤2.5 μm) samples allows contributions from biomass burning and secondary organic aerosols to be estimated. This separation is useful for evaluating control strategy effectiveness, identifying exceptional events, and determining natural visibility conditions.
DOI: 10.6084/m9.figshare.5797377
title: Supplementary Data for "High Sensitivity of Metal Footprint to National GDP in part Explained by Capital Formation", which is available at https://doi.org/10.1038/s41561-018-0091-y.

description: Data for dependent and independent variables used in the panel analysis in the manuscript titled "High Sensitivity of Metal Footprint to National GDP in part Explained by Capital Formation", which is available at https://doi.org/10.1038/s41561-018-0091-y.
DOI: 10.6084/m9.figshare.5797377.v1
title: Supplementary Data for "High Sensitivity of Metal Footprint to National GDP in part Explained by Capital Formation", which is available at https://doi.org/10.1038/s41561-018-0091-y.

description: Data for dependent and independent variables used in the panel analysis in the manuscript titled "High Sensitivity of Metal Footprint to National GDP in part Explained by Capital Formation", which is available at https://doi.org/10.1038/s41561-018-0091-y.
DOI: 10.6084/m9.figshare.5797383
title: Supplementary Code for "High Sensitivity of Metal Footprint to National GDP in part Explained by Capital Formation" (https://doi.org/10.1038/s41561-018-0091-y)

description: Code for the panel analysis in the manuscript titled <i>"High Sensitivity of Metal Footprint to National GDP in part Explained by Capital Formation", which is available at https://doi.org/10.1038/s41561-018-0091-y</i>
DOI: 10.6084/m9.figshare.5797503
title: Additional file 2: Table S3. of The antihyperlipidemic effects of fullerenol nanoparticles via adjusting the gut microbiota in vivo

description: Taxon-based summaries for oral administration of fullerenol NPs. (XLSX 152Â kb)
DOI: 10.6084/m9.figshare.5797503.v1
title: Additional file 2: Table S3. of The antihyperlipidemic effects of fullerenol nanoparticles via adjusting the gut microbiota in vivo

description: Taxon-based summaries for oral administration of fullerenol NPs. (XLSX 152Â kb)
DOI: 10.6084/m9.figshare.5797587
title: Additional file 1: of Calcium-dependent protein kinases in cotton: insights into early plant responses to salt stress

description: Summary of cotton CPKs. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.5797587.v1
title: Additional file 1: of Calcium-dependent protein kinases in cotton: insights into early plant responses to salt stress

description: Summary of cotton CPKs. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.5797641
title: Additional file 3: of FineMAV: prioritizing candidate genetic variants driving local adaptations in human populations

description: Top 100 FineMAV SNPs in each continental population (xâ =â 3.5). (XLSX 92 kb)
DOI: 10.6084/m9.figshare.5797641.v1
title: Additional file 3: of FineMAV: prioritizing candidate genetic variants driving local adaptations in human populations

description: Top 100 FineMAV SNPs in each continental population (xâ =â 3.5). (XLSX 92 kb)
DOI: 10.6084/m9.figshare.5797650
title: MOESM8 of Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus

description: Additional file 8. Glycosyl residue composition and total carbohydrate of cell wall extracts from stem tissues of 9-month-old, greenhouse-grown P. deltoides WT and PtGAUT12.1-OE lines (AB29.2, AB29.7, and AB29.12). Data are average μg amount of each designated monosaccharide per mg alcohol insoluble residue (AIR), measured by GC–MS of tetramethylsilane (TMS) derivatives. Wall extracts are from sequential extractions of AIR using 50 mM ammonium oxalate, 50 mM sodium carbonate, 1 M KOH, 4 M KOH, 100 mM sodium chlorite (chlorite), 4 M KOH post-chlorite (PC), and the final residual insoluble pellet. Values in bold are those of the transgenic lines that are significantly different from WT values at *P &lt; 0.05 and **P &lt; 0.001 significant levels (one-way ANOVA followed by Tukey’s multiple comparison test).
DOI: 10.6084/m9.figshare.5797650.v1
title: MOESM8 of Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus

description: Additional file 8. Glycosyl residue composition and total carbohydrate of cell wall extracts from stem tissues of 9-month-old, greenhouse-grown P. deltoides WT and PtGAUT12.1-OE lines (AB29.2, AB29.7, and AB29.12). Data are average μg amount of each designated monosaccharide per mg alcohol insoluble residue (AIR), measured by GC–MS of tetramethylsilane (TMS) derivatives. Wall extracts are from sequential extractions of AIR using 50 mM ammonium oxalate, 50 mM sodium carbonate, 1 M KOH, 4 M KOH, 100 mM sodium chlorite (chlorite), 4 M KOH post-chlorite (PC), and the final residual insoluble pellet. Values in bold are those of the transgenic lines that are significantly different from WT values at *P &lt; 0.05 and **P &lt; 0.001 significant levels (one-way ANOVA followed by Tukey’s multiple comparison test).
DOI: 10.6084/m9.figshare.5797653
title: Additional file 4: of FineMAV: prioritizing candidate genetic variants driving local adaptations in human populations

description: GWAS hits among the top 100 FineMAV SNPs within each continental population. GWAS_SNP column specifies GWAS hits linked to given FineMAV SNPs. r2 column specifies the level of LD between the FineMAV SNP and the closest GWAS SNP. Genomic positions and the direction of genome-wide association are given for FineMAV SNPs. DER, derived allele of FineMAV SNP; ANC, ancestral allele of FineMAV SNP. Grayed variants might underline the same selection event. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.5797653.v1
title: Additional file 4: of FineMAV: prioritizing candidate genetic variants driving local adaptations in human populations

description: GWAS hits among the top 100 FineMAV SNPs within each continental population. GWAS_SNP column specifies GWAS hits linked to given FineMAV SNPs. r2 column specifies the level of LD between the FineMAV SNP and the closest GWAS SNP. Genomic positions and the direction of genome-wide association are given for FineMAV SNPs. DER, derived allele of FineMAV SNP; ANC, ancestral allele of FineMAV SNP. Grayed variants might underline the same selection event. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.5797665
title: MOESM9 of Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus

description: Additional file 9. Glycosyl residue composition and total carbohydrate of cell wall extracts from stem tissues of 9-month-old, greenhouse-grown P. deltoides WT and PdGAUT12.1-KD lines (AB30.1, AB30.3, AB30.8 and AB30.11). Data are average μg amount of each designated monosaccharide per mg alcohol insoluble residue (AIR), measured by GC–MS of tetramethylsilane (TMS) derivatives. Wall extracts are from sequential extractions of AIR using 50 mM ammonium oxalate, 50 mM sodium carbonate, 1 M KOH, 4 M KOH, 100 mM sodium chlorite (chlorite), 4 M KOH post-chlorite (PC), and the final residual insoluble pellet. The data, except for those of the insoluble wall fractions, were previously reported in mol% and mass (μg sugar/mg extract) [5]. Values in bold are those of the transgenic lines that are significantly different from WT values at *P &lt; 0.05 and **P &lt; 0.001 significant levels (one-way ANOVA followed by Tukey’s multiple comparison test).