cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11293688
title: Appendix S2: Song Recordings from Evolution of a multifunctional trait: shared effects of foraging ecology and thermoregulation on beak morphology, with consequences for song evolution.

description: Recordings used in this study
DOI: 10.6084/m9.figshare.11293682
title: Appendix S1: Specimens from Evolution of a multifunctional trait: shared effects of foraging ecology and thermoregulation on beak morphology, with consequences for song evolution.

description: Specimens used in this study
DOI: 10.6084/m9.figshare.11293688.v2
title: Appendix S2: Song Recordings from Evolution of a multifunctional trait: shared effects of foraging ecology and thermoregulation on beak morphology, with consequences for song evolution.

description: Recordings used in this study
DOI: 10.6084/m9.figshare.11293682.v2
title: Appendix S1: Specimens from Evolution of a multifunctional trait: shared effects of foraging ecology and thermoregulation on beak morphology, with consequences for song evolution.

description: Specimens used in this study
DOI: 10.6084/m9.figshare.11293688.v1
title: Appendix S2: Song Recordings from Evolution of a multifunctional trait: shared effects of foraging ecology and thermoregulation on beak morphology, with consequences for song evolution

description: Recordings used in this study
DOI: 10.6084/m9.figshare.11293682.v1
title: Appendix S1: Specimens from Evolution of a multifunctional trait: shared effects of foraging ecology and thermoregulation on beak morphology, with consequences for song evolution

description: Specimens used in this study
DOI: 10.6084/m9.figshare.11300780
title: List of calculated orientation parameter averages for steady flow from Oriented suspension mechanics with application to improving flow linear dichroism spectroscopy.

description: Flow linear dichroism is a biophysical spectroscopic technique that exploits the shear-induced alignment of elongated particles in suspension. Motivated by the broad aim of optimizing the sensitivity of this technique, and more specifically by a hand-held synthetic biotechnology prototype for waterborne-pathogen detection, a model of steady and oscillating pressure-driven channel flow and orientation dynamics of a suspension of slender microscopic fibres is developed. The model couples the Fokker–Planck equation for Brownian suspensions with the narrow channel flow equations, the latter modified to incorporate mechanical anisotropy induced by the particles. The linear dichroism signal is estimated through integrating the perpendicular components of the distribution function via an appropriate formula which takes the biaxial nature of the orientation into account. For the specific application of pathogen detection via binding of M13 bacteriophage, it is found that increases in the channel depth are more significant in improving the linear dichroism signal than increases in the channel width. Increasing the channel depth to 2 mm and pressure gradient to 5 × 10<sup>4</sup> Pa m<sup>−1</sup> essentially maximizes the alignment. Oscillating flow can produce nearly equal alignment to steady flow at appropriate frequencies, which has significant potential practical value in the analysis of small sample volumes.
DOI: 10.6084/m9.figshare.11300777
title: List of calculated velocity and orientation parameter averages for oscillating flow from Oriented suspension mechanics with application to improving flow linear dichroism spectroscopy.

description: Flow linear dichroism is a biophysical spectroscopic technique that exploits the shear-induced alignment of elongated particles in suspension. Motivated by the broad aim of optimizing the sensitivity of this technique, and more specifically by a hand-held synthetic biotechnology prototype for waterborne-pathogen detection, a model of steady and oscillating pressure-driven channel flow and orientation dynamics of a suspension of slender microscopic fibres is developed. The model couples the Fokker–Planck equation for Brownian suspensions with the narrow channel flow equations, the latter modified to incorporate mechanical anisotropy induced by the particles. The linear dichroism signal is estimated through integrating the perpendicular components of the distribution function via an appropriate formula which takes the biaxial nature of the orientation into account. For the specific application of pathogen detection via binding of M13 bacteriophage, it is found that increases in the channel depth are more significant in improving the linear dichroism signal than increases in the channel width. Increasing the channel depth to 2 mm and pressure gradient to 5 × 10<sup>4</sup> Pa m<sup>−1</sup> essentially maximizes the alignment. Oscillating flow can produce nearly equal alignment to steady flow at appropriate frequencies, which has significant potential practical value in the analysis of small sample volumes.
DOI: 10.6084/m9.figshare.11300780.v2
title: List of calculated orientation parameter averages for steady flow from Oriented suspension mechanics with application to improving flow linear dichroism spectroscopy.

description: Flow linear dichroism is a biophysical spectroscopic technique that exploits the shear-induced alignment of elongated particles in suspension. Motivated by the broad aim of optimizing the sensitivity of this technique, and more specifically by a hand-held synthetic biotechnology prototype for waterborne-pathogen detection, a model of steady and oscillating pressure-driven channel flow and orientation dynamics of a suspension of slender microscopic fibres is developed. The model couples the Fokker–Planck equation for Brownian suspensions with the narrow channel flow equations, the latter modified to incorporate mechanical anisotropy induced by the particles. The linear dichroism signal is estimated through integrating the perpendicular components of the distribution function via an appropriate formula which takes the biaxial nature of the orientation into account. For the specific application of pathogen detection via binding of M13 bacteriophage, it is found that increases in the channel depth are more significant in improving the linear dichroism signal than increases in the channel width. Increasing the channel depth to 2 mm and pressure gradient to 5 × 10<sup>4</sup> Pa m<sup>−1</sup> essentially maximizes the alignment. Oscillating flow can produce nearly equal alignment to steady flow at appropriate frequencies, which has significant potential practical value in the analysis of small sample volumes.
DOI: 10.6084/m9.figshare.11300777.v2
title: List of calculated velocity and orientation parameter averages for oscillating flow from Oriented suspension mechanics with application to improving flow linear dichroism spectroscopy.

description: Flow linear dichroism is a biophysical spectroscopic technique that exploits the shear-induced alignment of elongated particles in suspension. Motivated by the broad aim of optimizing the sensitivity of this technique, and more specifically by a hand-held synthetic biotechnology prototype for waterborne-pathogen detection, a model of steady and oscillating pressure-driven channel flow and orientation dynamics of a suspension of slender microscopic fibres is developed. The model couples the Fokker–Planck equation for Brownian suspensions with the narrow channel flow equations, the latter modified to incorporate mechanical anisotropy induced by the particles. The linear dichroism signal is estimated through integrating the perpendicular components of the distribution function via an appropriate formula which takes the biaxial nature of the orientation into account. For the specific application of pathogen detection via binding of M13 bacteriophage, it is found that increases in the channel depth are more significant in improving the linear dichroism signal than increases in the channel width. Increasing the channel depth to 2 mm and pressure gradient to 5 × 10<sup>4</sup> Pa m<sup>−1</sup> essentially maximizes the alignment. Oscillating flow can produce nearly equal alignment to steady flow at appropriate frequencies, which has significant potential practical value in the analysis of small sample volumes.
DOI: 10.6084/m9.figshare.11300780.v1
title: List of calculated orientation parameter averages for steady flow from Oriented suspension mechanics with application to improving flow linear dichroism spectroscopy

description: Flow linear dichroism is a biophysical spectroscopic technique that exploits the shear-induced alignment of elongated particles in suspension. Motivated by the broad aim of optimizing the sensitivity of this technique, and more specifically by a hand-held synthetic biotechnology prototype for waterborne-pathogen detection, a model of steady and oscillating pressure-driven channel flow and orientation dynamics of a suspension of slender microscopic fibres is developed. The model couples the Fokker–Planck equation for Brownian suspensions with the narrow channel flow equations, the latter modified to incorporate mechanical anisotropy induced by the particles. The linear dichroism signal is estimated through integrating the perpendicular components of the distribution function via an appropriate formula which takes the bi-axial nature of the orientation into account. For the specific application of pathogen detection via binding of M13 bacteriophage, it is found that increases in the channel depth are more significant in improving the linear dichroism signal than increases in the channel width. Increasing the channel depth to 2 mm and pressure gradient to 5 × 10<sup>4</sup> Pa m<sup>−1</sup> essentially maximizes the alignment. Oscillating flow can produce nearly equal alignment to steady flow at appropriate frequencies, which has significant potential practical value in the analysis of small sample volumes.
DOI: 10.6084/m9.figshare.11300777.v1
title: List of calculated velocity and orientation parameter averages for oscillating flow from Oriented suspension mechanics with application to improving flow linear dichroism spectroscopy

description: Flow linear dichroism is a biophysical spectroscopic technique that exploits the shear-induced alignment of elongated particles in suspension. Motivated by the broad aim of optimizing the sensitivity of this technique, and more specifically by a hand-held synthetic biotechnology prototype for waterborne-pathogen detection, a model of steady and oscillating pressure-driven channel flow and orientation dynamics of a suspension of slender microscopic fibres is developed. The model couples the Fokker–Planck equation for Brownian suspensions with the narrow channel flow equations, the latter modified to incorporate mechanical anisotropy induced by the particles. The linear dichroism signal is estimated through integrating the perpendicular components of the distribution function via an appropriate formula which takes the bi-axial nature of the orientation into account. For the specific application of pathogen detection via binding of M13 bacteriophage, it is found that increases in the channel depth are more significant in improving the linear dichroism signal than increases in the channel width. Increasing the channel depth to 2 mm and pressure gradient to 5 × 10<sup>4</sup> Pa m<sup>−1</sup> essentially maximizes the alignment. Oscillating flow can produce nearly equal alignment to steady flow at appropriate frequencies, which has significant potential practical value in the analysis of small sample volumes.
DOI: 10.6084/m9.figshare.11335481
title: Dataset 1 from Collective decision-making appears more egalitarian in populations where group fission costs are higher.

description: Data used in all statistical models.
DOI: 10.6084/m9.figshare.11335481.v2
title: Dataset 1 from Collective decision-making appears more egalitarian in populations where group fission costs are higher.

description: Data used in all statistical models.
DOI: 10.6084/m9.figshare.11335481.v1
title: Dataset 1 from Collective decision-making appears more egalitarian in populations where group fission costs are higher

description: Data used in all statistical models.
DOI: 10.6084/m9.figshare.11337131
title: Supporting Data from Raw material optimization and stone tool engineering in the Early Stone Age of Olduvai Gorge (Tanzania).

description: Supporting Data
DOI: 10.6084/m9.figshare.11337131.v2
title: Supporting Data from Raw material optimization and stone tool engineering in the Early Stone Age of Olduvai Gorge (Tanzania).

description: Supporting Data
DOI: 10.6084/m9.figshare.11337131.v1
title: Supporting Data from Raw material optimization and stone tool engineering in the Early Stone Age of Olduvai Gorge (Tanzania)

description: Supporting Data
DOI: 10.6084/m9.figshare.11337140
title: ESM data files from Host density drives viral, but not trypanosome, transmission in a key pollinator.

description: Data files 1 - 9 containing all data used for analyses in the article "Host density drives viral, but not trypanosome, transmission in a key pollinator" by Bailes et al., found at https://doi.org/10.1098/rspb.2019.1969
DOI: 10.6084/m9.figshare.11337140.v2
title: ESM data files from Host density drives viral, but not trypanosome, transmission in a key pollinator.

description: Data files 1 - 9 containing all data used for analyses in the article "Host density drives viral, but not trypanosome, transmission in a key pollinator" by Bailes et al., found at https://doi.org/10.1098/rspb.2019.1969
DOI: 10.6084/m9.figshare.11337140.v1
title: ESM data files from Host density drives viral, but not trypanosome, transmission in a key pollinator

description: Data files 1 - 9 containing all data used for analyses in the article "Host density drives viral, but not trypanosome, transmission in a key pollinator" by Bailes et al., found at https://doi.org/10.1098/rspb.2019.1969
DOI: 10.6084/m9.figshare.11370780
title: Raw data from Pre- and post-copulatory traits working in concert: sexual dichromatism in passerines is associated with sperm morphology.

description: All raw data for dichromatism and morphometric variables used in analyses.
DOI: 10.6084/m9.figshare.11370780.v2
title: Raw data from Pre- and post-copulatory traits working in concert: sexual dichromatism in passerines is associated with sperm morphology.

description: All raw data for dichromatism and morphometric variables used in analyses.
DOI: 10.6084/m9.figshare.11370780.v1
title: Raw data from Pre- and post-copulatory traits working in concert: sexual dichromatism in passerines is associated with sperm morphology

description: All raw data for dichromatism and morphometric variables used in analyses.
DOI: 10.6084/m9.figshare.11395716
title: Supplementary Material 4 from Developing the implicit association test to uncover hidden preferences for sustainable drainage systems.

description: Individual respondent scores in the Implicit Association Test (IAT) and Feeling Thermometer tests. D scores = IAT scores, TD = Thermometer Difference, NGP = Newcastle Great Park.
DOI: 10.6084/m9.figshare.11395716.v2
title: Supplementary Material 4 from Developing the implicit association test to uncover hidden preferences for sustainable drainage systems.

description: Individual respondent scores in the Implicit Association Test (IAT) and Feeling Thermometer tests. D scores = IAT scores, TD = Thermometer Difference, NGP = Newcastle Great Park.
DOI: 10.6084/m9.figshare.11410002
title: Phylogenetic Tree from Selection for increased male size predicts variation in sexual size dimorphism among fish species.

description: Phylogenetic tree used in this study (Newick file format)
DOI: 10.6084/m9.figshare.11395716.v1
title: Supplementary Material 4 from Developing the implicit association test to uncover hidden preferences for sustainable drainage systems

description: Individual respondent scores in the Implicit Association Test (IAT) and Feeling Thermometer tests. D scores = IAT scores, TD = Thermometer Difference, NGP = Newcastle Great Park.
DOI: 10.6084/m9.figshare.11410002.v2
title: Phylogenetic Tree from Selection for increased male size predicts variation in sexual size dimorphism among fish species.

description: Phylogenetic tree used in this study (Newick file format)
DOI: 10.6084/m9.figshare.11410002.v1
title: Phylogenetic Tree from Selection for increased male size predicts variation in sexual size dimorphism among fish species

description: Phylogenetic tree used in this study (Newick file format)
DOI: 10.6084/m9.figshare.11447811
title: Data file used for statistical analysis from Swimming exercise enhances brain plasticity in fish.

description: It is well-established that sustained exercise training can enhance brain plasticity and boost cognitive performance in mammals, but this phenomenon has not received much attention in fish. The aim of this study was to determine whether sustained swimming exercise can enhance brain plasticity in juvenile Atlantic salmon. Brain plasticity was assessed by both mapping the whole telencephalon transcriptome and conducting telencephalic region-specific microdissections on target genes. We found that 1772 transcripts were differentially expressed between the exercise and control groups. Gene ontology (GO) analysis identified 195 and 272 GO categories with a significant overrepresentation of up- or downregulated transcripts, respectively. A multitude of these GO categories was associated with neuronal excitability, neuronal signalling, cell proliferation and neurite outgrowth (i.e. cognition-related neuronal markers). Additionally, we found an increase in <i>proliferating cell nuclear antigen</i> (<i>pcna</i>) after both three and eight weeks of exercise in the equivalent to the hippocampus in fish. Furthermore, the expression of the neural plasticity markers <i>synaptotagmin (syt)</i> and <i>brain-derived neurotrophic factor</i> (<i>bdnf</i>) were also increased due to exercise in the equivalent to the lateral septum in fish. In conclusion, this is the first time that swimming exercise has been directly linked to increased telencephalic neurogenesis and neural plasticity in a teleost, and our results pave the way for future studies on exercise-induced neuroplasticity in fish.
DOI: 10.6084/m9.figshare.11447811.v2
title: Data file used for statistical analysis from Swimming exercise enhances brain plasticity in fish.

description: It is well-established that sustained exercise training can enhance brain plasticity and boost cognitive performance in mammals, but this phenomenon has not received much attention in fish. The aim of this study was to determine whether sustained swimming exercise can enhance brain plasticity in juvenile Atlantic salmon. Brain plasticity was assessed by both mapping the whole telencephalon transcriptome and conducting telencephalic region-specific microdissections on target genes. We found that 1772 transcripts were differentially expressed between the exercise and control groups. Gene ontology (GO) analysis identified 195 and 272 GO categories with a significant overrepresentation of up- or downregulated transcripts, respectively. A multitude of these GO categories was associated with neuronal excitability, neuronal signalling, cell proliferation and neurite outgrowth (i.e. cognition-related neuronal markers). Additionally, we found an increase in <i>proliferating cell nuclear antigen</i> (<i>pcna</i>) after both three and eight weeks of exercise in the equivalent to the hippocampus in fish. Furthermore, the expression of the neural plasticity markers <i>synaptotagmin (syt)</i> and <i>brain-derived neurotrophic factor</i> (<i>bdnf</i>) were also increased due to exercise in the equivalent to the lateral septum in fish. In conclusion, this is the first time that swimming exercise has been directly linked to increased telencephalic neurogenesis and neural plasticity in a teleost, and our results pave the way for future studies on exercise-induced neuroplasticity in fish.
DOI: 10.6084/m9.figshare.11447811.v1
title: Data file used for statistical analysis from Swimming exercise enhances brain plasticity in fish

description: It is well-established that sustained exercise training can enhance brain plasticity and boost cognitive performance in mammals, but this phenomenon has not received much attention in fish. The aim of this study was to determine whether sustained swimming exercise can enhance brain plasticity in juvenile Atlantic salmon. Brain plasticity was assessed by both mapping the whole telencephalon transcriptome and conducting telencephalic region-specific microdissections on target genes. We found that 1772 transcripts were differentially expressed between the exercise and control groups. Gene ontology (GO) analysis identified 195 and 272 GO categories with a significant overrepresentation of up- or downregulated transcripts, respectively. A multitude of these GO categories was associated with neuronal excitability, neuronal signalling, cell proliferation and neurite outgrowth (i.e. cognition-related neuronal markers). Additionally, we found an increase in <i>proliferating cell nuclear antigen</i> (<i>pcna</i>) after both three and eight weeks of exercise in the equivalent to the hippocampus in fish. Furthermore, the expression of the neural plasticity markers <i>synaptotagmin syt</i> and <i>brain-derived neurotrophic factor</i> (<i>bdnf</i>) were also increased due to exercise in the equivalent to the lateral septum in fish. In conclusion, this is the first time that swimming exercise has been directly linked to increased telencephalic neurogenesis and neural plasticity in a teleost, and our results pave the way for future studies on exercise-induced neuroplasticity in fish.
DOI: 10.6084/m9.figshare.11447832
title: Data S1 from Linking hunting weaponry to attack strategies in sailfish and striped marlin.

description: Data used for statistical analysis
DOI: 10.6084/m9.figshare.11447832.v2
title: Data S1 from Linking hunting weaponry to attack strategies in sailfish and striped marlin.

description: Data used for statistical analysis
DOI: 10.6084/m9.figshare.11447832.v1
title: Data S1 from Linking hunting weaponry to attack strategies in sailfish and striped marlin

description: Data used for statistical analysis
DOI: 10.6084/m9.figshare.11448024
title: Supplementary Table from KAP1 targets actively transcribed genomic loci to exert pleomorphic effects on RNA polymerase II activity.

description: KAP1 (KRAB-associated protein 1) is best known as a co-repressor responsible for inducing heterochromatin formation notably at transposable elements. However, it has also been observed to bind the transcription start site of actively expressed genes. To address this paradox, we characterized the protein interactome of KAP1 in the human K562 erythro-leukaemia cell line. We found that the regulator can associate with a wide range of nucleic acid binding proteins, nucleosome remodellers, chromatin modifiers and other transcription modulators. We further determined that KAP1 is recruited at actively transcribed polymerase II promoters, where its depletion resulted in pleomorphic effects, whether expression of these genes was normally constitutive or inducible, consistent with the breadth of possible KAP1 interactors.This article is part of the discussion meeting issue ‘Crossroads between transposons and gene regulation’.
DOI: 10.6084/m9.figshare.12672881
title: Data_Source_SCNGS_WGAN

description: "DSCN-WGAN.csv" contains 9824 samples, the original sample data set without feature extraction and data processing."DSCN-WGANLine1.csv" contains 3472 samples, which is the synthetic sample data of the first feeder."DSCN-WGANLine2.csv" contains 1806 samples, which is the synthetic sample data of the second feeder.<br>"DSCN-WGANLine3.csv" contains 1722 samples, which is the synthetic sample data of the third feeder.<br>