cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kmygfh
title: Occurrence Download

description: A dataset containing 371 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "Country is Belgium",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Aegolius funereus (Linnaeus, 1758), Asio flammeus (Pontoppidan, 1763), Bubo bubo (Linnaeus, 1758), Bubo scandiacus (Linnaeus, 1758), Glaucidium passerinum (Linnaeus, 1758), Strix uralensis Pallas, 1771, Surnia ulula (Linnaeus, 1758), Strix nebulosa J.R.Forster, 1772)",
 "Year 2000-2023"
 ]
}

 The dataset includes 371 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159935-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7z6fr
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtandra dasymallos Hilliard & B.L.Burtt"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159879-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2dl7hf
title: Occurrence Download

description: A dataset containing 82649 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Specimen Database of Colorado Vascular Plants"
 ]
}

 The dataset includes 82649 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006114-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.54u6zc
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtandra cuprea B.L.Burtt"
 ]
}

 The dataset includes 36 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159863-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23729/499ced82-89ac-414b-9060-1e47425a1b22
title: Transcriptomic data used in publication during 2014 to 2024

description: Transcriptomic data used in publication during 2014 to 2024
DOI: 10.15468/dl.an4ryw
title: Occurrence Download

description: A dataset containing 4852 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Danaus plexippus plexippus"
 ]
}

 The dataset includes 4852 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005206-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8zbp8
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtandra cupulata Ridl."
 ]
}

 The dataset includes 86 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159865-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.piagjy
title: Occurrence Download

description: A dataset containing 563 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Anopheles evansae (Brèthes, 1926)",
 "TaxonKey is Anopheles albitarsis albitarsis",
 "TaxonKey is Anopheles evansae lloydi Unti, 1941",
 "TaxonKey is Anopheles evansae evansae",
 "TaxonKey is Anopheles evansae arthuri Unti, 1941",
 "TaxonKey is Anopheles peryassui Dyar & Knab, 1908",
 "TaxonKey is Anopheles albitarsis Lynch Arribálzaga, 1878",
 "TaxonKey is Anopheles evansae albertoi Unti, 1941",
 "TaxonKey is Anopheles albitarsis domesticus Galvão & Damasceno, 1944",
 "TaxonKey is Anopheles cruzii Dyar & Knab, 1908",
 "TaxonKey is Anopheles cruzii cruzii"
 ]
}

 The dataset includes 563 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005207-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34808/c4k6-ws08
title: Polish bibliological journals - publishing policy data set

description: The file contains the results of an analysis of the publishing policies of Polish bibliological journals conducted by librarians of the Library of the Gdansk University of Technology. Among the elements studied were Open Access status, Creative Commons license type and self-archiving practices.The survey was conducted from 2018 to 2023 on the basis of data on the websites of journals or publishers.
DOI: 10.15468/dl.kmnvxz
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtandra davaoensis Elmer"
 ]
}

 The dataset includes 40 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159881-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9tfv3
title: Occurrence Download

description: A dataset containing 338343 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erigeron canadensis L."
 ]
}

 The dataset includes 338343 records from 1851 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159884-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15233268
title: P-glycoprotein expression skews mitochondrial dye measurements in T cells

description: Assays to monitor metabolic parameters of immune cells at a single cell level provide efficient means to study immunometabolism. We show here that staining intensity of mitochondria targeted probes in T cells is drastically influenced by P-glycoprotein/P-gp expression, a xenobiotic efflux pump that extrudes these fluorescent dyes. Discrepancies between MTG signals and multiple dye-independent measurements are seen in CD4 T and CD8 T cell subsets and are corrected by P-gp inhibition (PSC833) during MTG staining. We further investigate invariant Natural Killer T (iNKT) cells, which express the highest level of P-glycoprotein among T cells. Using mtDNA quantification, mitochondria targeted reporter, respiration and proteomics, we establish that iNKT cells have higher mitochondrial content and activity than CD4 T cells, opposite to what MTG signals reveal. A similar phenomenon is also seen in human PBMCs, and with TMRE, a dye indicator of mitochondrial membrane potential. Collectively, these data argue that P-glycoprotein expression is a significant confounding factor when analyzing T cells using mitochondrial specific dyes. Complementary methods are necessary to reliably assess mitochondrial features in T cells. 

 

The proteomics data are raw files acquired on Orbitrap Exploris 480 mass spectrometer using data-independent analysis at the University of Arkansas Medical Sciences Proteomics Core.
DOI: 10.5281/zenodo.15233269
title: P-glycoprotein expression skews mitochondrial dye measurements in T cells

description: Assays to monitor metabolic parameters of immune cells at a single cell level provide efficient means to study immunometabolism. We show here that staining intensity of mitochondria targeted probes in T cells is drastically influenced by P-glycoprotein/P-gp expression, a xenobiotic efflux pump that extrudes these fluorescent dyes. Discrepancies between MTG signals and multiple dye-independent measurements are seen in CD4 T and CD8 T cell subsets and are corrected by P-gp inhibition (PSC833) during MTG staining. We further investigate invariant Natural Killer T (iNKT) cells, which express the highest level of P-glycoprotein among T cells. Using mtDNA quantification, mitochondria targeted reporter, respiration and proteomics, we establish that iNKT cells have higher mitochondrial content and activity than CD4 T cells, opposite to what MTG signals reveal. A similar phenomenon is also seen in human PBMCs, and with TMRE, a dye indicator of mitochondrial membrane potential. Collectively, these data argue that P-glycoprotein expression is a significant confounding factor when analyzing T cells using mitochondrial specific dyes. Complementary methods are necessary to reliably assess mitochondrial features in T cells. 

 

The proteomics data are raw files acquired on Orbitrap Exploris 480 mass spectrometer using data-independent analysis at the University of Arkansas Medical Sciences Proteomics Core.
DOI: 10.17632/3wg6kztvvd.1
title: Human iPSC-derived neural stem cells displaying radial glia signature exhibit long-term safety in mice

description: The dataset includes the raw data of graphs shown in figures 1, 2, 3, 5, 6, and 7 and in supplementary figures 1, 2, 3, 4, 5, 7, and 8 of the paper: Human iPSC-derived neural stem cells displaying radial glia signature exhibit long-term safety in mice. Luciani M, Garsia C, Beretta S, Cifola I, Peano C, Merelli I, Petiti L, Miccio A, Meneghini V, Gritti A. Nat Commun. 2024 Nov 1;15(1):9433. doi: 10.1038/s41467-024-53613-7. PMID: 39487141
The bulk RNA-seq, SREBF1-deficient RNA-seq, and ChIP-seq data generated in this study have been deposited at GEO under accession number GSE239446. The single-cell RNA-seq data generated in this study have been deposited at GEO under accession number GSE238206. The processed RNA-seq, ChIP-seq, and scRNA-seq data (list of DEGs and GO terms) are available in Supplementary Data 1-4 files.

Human induced pluripotent stem cell-derived neural stem/progenitor cells (hiPSC-NSCs) hold promise for treating neurodegenerative and demyelinating disorders. However, comprehensive studies on their identity and safety remain limited. In this study, we demonstrate that hiPSC-NSCs adopt a radial glia-associated signature, sharing key epigenetic and transcriptional characteristics with human fetal neural stem cells (hfNSCs) while exhibiting divergent profiles from glioblastoma stem cells. Long-term transplantation studies in mice showed robust and stable engraftment of hiPSC-NSCs, with predominant differentiation into glial cells and no evidence of tumor formation. Additionally, we identified the Sterol Regulatory Element Binding Transcription Factor 1 (SREBF1) as a regulator of astroglial differentiation in hiPSC-NSCs. These findings provide valuable transcriptional and epigenetic reference datasets to prospectively define the maturation stage of NSCs derived from different hiPSC sources and demonstrate the long-term safety of hiPSC-NSCs, reinforcing their potential as a viable alternative to hfNSCs for clinical applications.
DOI: 10.5281/zenodo.15234174
title: The precipitation and evapotranspiration estimates for data-scarce river basins constrained by a  tri-constraint approach

description: This dataset includes two files: MDT-ET-P-ratio.xlsx and Existing-ET-P.xlsx. The file MDT-ET-P-ratio.xlsx contains ET/P (evapotranspiration/precipitation) results constrained by the tri-constraint framework that integrates Multi-physics ensemble modeling, observed Discharge data, and Budyko Theory (MDT) for three basins: two well-gauged basins (the Reynolds Creek (RC) and the Little Washita (LW) Experimental Watershed) and one data-sparse basin (Upper Brahmaputra River Basin (UBB)). Each sheet corresponds to one basin and includes results from 1,500 samples generated under three precipitation input scenarios, along with the mean and standard deviation of ET/P. The file Existing-ET-P.xlsx provides the multi-year averages of existing P and ET datasets (in mm/yr) for the largest sub-basin of UBB, Nuxia.
DOI: 10.5281/zenodo.15236609
title: The precipitation and evapotranspiration estimates for data-scarce river basins constrained by a  tri-constraint approach

description: This dataset includes two files: MDT-ET-P-ratio.xlsx and Existing-ET-P.xlsx. The file MDT-ET-P-ratio.xlsx contains ET/P (evapotranspiration/precipitation) results constrained by the tri-constraint framework that integrates Multi-physics ensemble modeling, observed Discharge data, and Budyko Theory (MDT) for three basins: two well-gauged basins (the Reynolds Creek (RC) and the Little Washita (LW) Experimental Watershed) and one data-sparse basin (Upper Brahmaputra River Basin (UBB)). Each sheet corresponds to one basin and includes results from 1,500 samples generated under three precipitation input scenarios, along with the mean and standard deviation of ET/P. The file Existing-ET-P.xlsx provides the multi-year averages of existing P and ET datasets (in mm/yr) for the largest sub-basin of UBB, Nuxia.
DOI: 10.15468/dl.yrgft6
title: Occurrence Download

description: A dataset containing 4983 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Epipremnum aureum (Linden & André) G.S.Bunting"
 ]
}

 The dataset includes 4983 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016512-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkdrfa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capsicum frutescens",
 "Country is Timor-Leste",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023529-250920141307145/datasets/export for details.
DOI: 10.15468/dl.un3axh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capsicum frutescens",
 "Country is Yemen",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023530-250920141307145/datasets/export for details.
DOI: 10.15468/dl.cgqdzj
title: Occurrence Download

description: A dataset containing 4073048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-97.5167 22.85176,-98.96886 22.76252,-99.23509 22.13621,-98.79944 20.76214,-98.60582 19.76315,-97.56511 18.32187,-96.58419 17.38313,-95.90473 17.0272,-95.11569 16.77555,-94.0304 16.66731,-93.16131 16.92995,-92.99082 18.57442,-93.25705 18.94109,-94.17675 18.57442,-95.14485 19.10126,-95.77412 19.44395,-96.25817 20.58099,-96.98425 21.55212,-97.5167 22.85176))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 4073048 records from 826 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023500-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqa7p9
title: Occurrence Download

description: A dataset containing 418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fimbristylis littoralis",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 418 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023531-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30132103
title: Onto-Temporal Recursion Origin: The Genesis Theory

description: <b>Recursive Genesis Hypothesis</b> A theory that explores the origin before the <b><i>Big Bang</i></b> — the “<b><i>before of before.</i></b>” This theory addresses the most foundational cosmological question: What was the universe before the Big Bang — if it was “nothing”? The Recursive Genesis Hypothesis proposes that the universe didn’t require external energy or force to become alive. Instead, it presents a theory of internal creation out of nothing — a fully self-contained origin. What if the universe was never caused at all — but simply looped itself into being? It argues that the universe did not begin with a singular explosion, but emerged from a recursive, self-originating process arising out of a zero-dimensional, maximally symmetric state — a condition of absolute spatial nullity. In this view, “nothingness” is redefined not as the absence of content, but as a structurally recursive state: a fixed ontological loop in which time, space, and energy were entangled in total symmetry. This model asserts that time is not a fundamental law, but an emergent effect of symmetry-breaking at the moment of genesis. <br><br>The initial state — a closed, non-causal recursion — underwent a spontaneous transition, giving rise to the first quantum fluctuations. These were not the result of explosive detonation, but of spontaneous systemic asymmetry, unfolding internally into space, time, and matter. In doing so, this theory provides a mechanism by which something arises from nothing, not through external input, but through internal recursion. The result is a non-local, space-filling genesis, without a center, without a singularity, and without an external cause. It challenges the classical Big Bang narrative as a violent thermodynamic origin, and instead offers a model grounded in recursive causality, self-generation, and spontaneous emergence. <br><br>Empirically, this hypothesis draws support from the observed smoothness, isotropy, and centerless expansion of the early universe, as captured in the Cosmic Microwave Background (CMB). These features are more consistent with a recursive genesis model than with any explosive or point-based origin. Ultimately, this theory offers a framework for understanding the pre-causal architecture of existence, and the transition from structural recursion to physical reality.
DOI: 10.6084/m9.figshare.30132103.v6
title: Onto-Temporal Recursion Origin: The Genesis Theory

description: <b>Recursive Genesis Hypothesis</b> A theory that explores the origin before the <b><i>Big Bang</i></b> — the “<b><i>before of before.</i></b>” This theory addresses the most foundational cosmological question: What was the universe before the Big Bang — if it was “nothing”? The Recursive Genesis Hypothesis proposes that the universe didn’t require external energy or force to become alive. Instead, it presents a theory of internal creation out of nothing — a fully self-contained origin. What if the universe was never caused at all — but simply looped itself into being? It argues that the universe did not begin with a singular explosion, but emerged from a recursive, self-originating process arising out of a zero-dimensional, maximally symmetric state — a condition of absolute spatial nullity. In this view, “nothingness” is redefined not as the absence of content, but as a structurally recursive state: a fixed ontological loop in which time, space, and energy were entangled in total symmetry. This model asserts that time is not a fundamental law, but an emergent effect of symmetry-breaking at the moment of genesis. <br><br>The initial state — a closed, non-causal recursion — underwent a spontaneous transition, giving rise to the first quantum fluctuations. These were not the result of explosive detonation, but of spontaneous systemic asymmetry, unfolding internally into space, time, and matter. In doing so, this theory provides a mechanism by which something arises from nothing, not through external input, but through internal recursion. The result is a non-local, space-filling genesis, without a center, without a singularity, and without an external cause. It challenges the classical Big Bang narrative as a violent thermodynamic origin, and instead offers a model grounded in recursive causality, self-generation, and spontaneous emergence. <br><br>Empirically, this hypothesis draws support from the observed smoothness, isotropy, and centerless expansion of the early universe, as captured in the Cosmic Microwave Background (CMB). These features are more consistent with a recursive genesis model than with any explosive or point-based origin. Ultimately, this theory offers a framework for understanding the pre-causal architecture of existence, and the transition from structural recursion to physical reality.
DOI: 10.6084/m9.figshare.30132103.v7
title: Onto-Temporal Recursion Origin: The Genesis Theory

description: <b>Recursive Genesis Hypothesis</b> A theory that explores the origin before the <b><i>Big Bang</i></b> — the “<b><i>before of before.</i></b>” This theory addresses the most foundational cosmological question: What was the universe before the Big Bang — if it was “nothing”? The Recursive Genesis Hypothesis proposes that the universe didn’t require external energy or force to become alive. Instead, it presents a theory of internal creation out of nothing — a fully self-contained origin. What if the universe was never caused at all — but simply looped itself into being? It argues that the universe did not begin with a singular explosion, but emerged from a recursive, self-originating process arising out of a zero-dimensional, maximally symmetric state — a condition of absolute spatial nullity. In this view, “nothingness” is redefined not as the absence of content, but as a structurally recursive state: a fixed ontological loop in which time, space, and energy were entangled in total symmetry. This model asserts that time is not a fundamental law, but an emergent effect of symmetry-breaking at the moment of genesis. <br><br>The initial state — a closed, non-causal recursion — underwent a spontaneous transition, giving rise to the first quantum fluctuations. These were not the result of explosive detonation, but of spontaneous systemic asymmetry, unfolding internally into space, time, and matter. In doing so, this theory provides a mechanism by which something arises from nothing, not through external input, but through internal recursion. The result is a non-local, space-filling genesis, without a center, without a singularity, and without an external cause. It challenges the classical Big Bang narrative as a violent thermodynamic origin, and instead offers a model grounded in recursive causality, self-generation, and spontaneous emergence. <br><br>Empirically, this hypothesis draws support from the observed smoothness, isotropy, and centerless expansion of the early universe, as captured in the Cosmic Microwave Background (CMB). These features are more consistent with a recursive genesis model than with any explosive or point-based origin. Ultimately, this theory offers a framework for understanding the pre-causal architecture of existence, and the transition from structural recursion to physical reality.
DOI: 10.15468/dl.36zqx6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cestrum diurnum",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023533-250920141307145/datasets/export for details.