cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4220496.v1
title: Material flow analysis for a sustainable resource management in island ecosystems

description: The Galapagos Archipelago (Ecuador) is one of the most well-known natural sites in the world for its unique biodiversity. This sensitive ecosystem is at risk due to a problematic equilibrium between its conservation policy and development demand. To contribute to implementing integrated sustainable resource management in the Galapagos Islands, a material flow analysis (MFA) of Santa Cruz – the island with the highest anthropic pressure in the archipelago – has been performed, outlining a quantitative and qualitative assessment of the direct flow of goods throughout the system. MFA outcomes have been used to evaluate and forecast the impact of some policies and strategies on the local system, focusing in particular on fossil fuel consumption and local agricultural production. This case study stresses the need to introduce a local MFA protocol to decision-makers’ toolbox, as it provides quantitative assessments on a broad spectrum of local development issues.
DOI: 10.6084/m9.figshare.4220481
title: Optimized on-line control of MMA polymerization using fast multi-objective DE

description: Optimized on-line control (OOC) of polymerization reactors combine the optimization with the on-line operation and control. In this, re-optimized control variable trajectories, in the presence of unplanned disturbances, are obtained and implemented on-line to save the batch. Also, the available computational time for the optimization is limited as the re-optimized trajectories need to be implemented in real time on the actual system. In the present study, the OOC of such a system, i.e., bulk polymerization of methyl methacrylate (MMA) in a batch reactor, is carried out in the occurrence of heater malfunction. To solve the underlying multi-objective problem, a multi-objective variant of differential evolution with an improved mutation strategy is developed. The developed algorithm shows faster convergence with respect to other compared algorithms for a large number of benchmark problems. Finally, this algorithm is used to find the optimal temperature trajectories and the OOC with these trajectories found to be successfully countering the effect of heater malfunction.
DOI: 10.6084/m9.figshare.4220481.v2
title: Optimized on-line control of MMA polymerization using fast multi-objective DE

description: Optimized on-line control (OOC) of polymerization reactors combine the optimization with the on-line operation and control. In this, re-optimized control variable trajectories, in the presence of unplanned disturbances, are obtained and implemented on-line to save the batch. Also, the available computational time for the optimization is limited as the re-optimized trajectories need to be implemented in real time on the actual system. In the present study, the OOC of such a system, i.e., bulk polymerization of methyl methacrylate (MMA) in a batch reactor, is carried out in the occurrence of heater malfunction. To solve the underlying multi-objective problem, a multi-objective variant of differential evolution with an improved mutation strategy is developed. The developed algorithm shows faster convergence with respect to other compared algorithms for a large number of benchmark problems. Finally, this algorithm is used to find the optimal temperature trajectories and the OOC with these trajectories found to be successfully countering the effect of heater malfunction.
DOI: 10.6084/m9.figshare.4220409
title: GRS 1915+105 Hand-Annotated RXTE Light Curves

description: This data set contains light curves (= astronomical time series) in 4 photon energy bands (total: 3-75 keV, low: 3-6 keV, mid: 9-15 keV, high: 15-75 keV) observed with the Rossi X-ray Timing Explorer (RXTE) between 1996 and 2000. Class annotations are in the header of each file, and follow the hand annotations by Belloni et al (2000) and Klein-Wolt et al (2002). <br>
DOI: 10.6084/m9.figshare.4220400
title: Experimental study of heat transfer characteristics in oscillating fluid flow in tube

description: In the present work, an experimental investigation of heat transfer enhancement parameters of the oscillating flow heat exchanger under different frequencies, tidal displacement, and heat fluxes is carried out. The effect of different parameters on experimental effective thermal conductivity and convective heat transfer coefficient in cooling region is studied using correlations given by different researchers. A correlation for experimental effective thermal conductivity in terms of <i>S</i><sup>2</sup><i>√ω</i> is derived based on experimental data. This correlation is useful for predicting the optimum value of <i>S</i><sup>2</sup><i>√ω</i> before onset of turbulence.
DOI: 10.6084/m9.figshare.4220406.v1
title: Return to work following acquired brain injury: the views of patients and employers

description: <b>Purpose:</b> To investigate which factors are experienced as facilitators of or barriers to return to work (RTW), or as solutions to RTW-problems, by patients with acquired brain injury (ABI) and by employers. <b>Design:</b> Qualitative study. <b>Method:</b> Ten patients with ABI and seven employers participated in semi-structured interviews. Patients and employers were unrelated. Transcripts were open coded. Factors perceived to be facilitators, barriers, or solutions to RTW-problems were grouped on a thematic basis. <b>Results:</b> Both patients and employers distinguished patient-related and work-related facilitators. When questioned about barriers, both patients and employers emphasized the importance of work-related factors such as sensory overload at the workplace and condition-related factors such as fatigue. Patients regarded poor guidance and support as barriers, but employers did not. Employers and patients suggested that solutions to RTW-problems were work-related, if necessary backed up by professional supervision. Patients also mentioned the need for understanding and acceptance of the limitations resulting from ABI. <b>Conclusions:</b> Both patients and employers mentioned work-related and patient-related facilitators, work-related and condition-related barriers, and work-related solutions to RTW-problems. Patients mentioned lack of guidance and support as barriers, and stressed the need for understanding and acceptance of the limitations resulting from ABI in any RTW-solution.Implications for rehabilitation•Patients and employers are important stakeholders in the return to work (RTW) process of a patient with acquired brain injury (ABI)•Professionals in rehabilitation practice, occupational and insurance physicians need to help patients and employers to realize RTW•Professionals have to be aware of the perspectives of patients and employers regarding RTW, such as:^Little understanding of limitations resulting from ABI^Work-related aspects hindering RTW, such as sensory overload and high work pressure^Condition-related barriers to RTW such as (invisible) cognitive limitations and fatigue^Need for professional assistance during the RTW process •Patients and employers are important stakeholders in the return to work (RTW) process of a patient with acquired brain injury (ABI) •Professionals in rehabilitation practice, occupational and insurance physicians need to help patients and employers to realize RTW •Professionals have to be aware of the perspectives of patients and employers regarding RTW, such as: ^Little understanding of limitations resulting from ABI ^Work-related aspects hindering RTW, such as sensory overload and high work pressure ^Condition-related barriers to RTW such as (invisible) cognitive limitations and fatigue ^Need for professional assistance during the RTW process
DOI: 10.6084/m9.figshare.4220289.v3
title: Analysis of Mycoplasma gallisepticum isolated from HD3 cells using 2D-DIGE

description: Chicken HD3 erytroblast cell were infected by bacterium Mycoplasma gallisepticum and cultivated for 24 hours (acute infection) and 7 weeks (chronic infection). After co-cultivation mycoplasmas were isolated from HD3 cells were compared with reference laboratory M. gallisepticum S6 strain using differential 2D electrophoresis with subsequent MALDI-MS analysis. Furthermore, mycoplasma isolated from eukaryotic cells (MIEC) were cultivated for sixteen passages in vitro. And MIEC after each passage was also compared with reference strain.
DOI: 10.6084/m9.figshare.4220277
title: Supplementary tables “The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite” by Tatiana Yurchenko et al

description: Supplementary tables S1 to S3
DOI: 10.6084/m9.figshare.4220277.v2
title: Supplementary tables “The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite” by Tatiana Yurchenko et al

description: Supplementary tables S1 to S3
DOI: 10.6084/m9.figshare.4220277.v1
title: Supplementary tables “The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite” by Tatiana Yurchenko et al

description: Supplementary tables S1 to S3
DOI: 10.6084/m9.figshare.4220265
title: Accession numbers from Phylogenetic evidence for the modular evolution of metazoan signalling pathways

description: Communication among cells was paramount to the evolutionary increase in cell type diversity and, ultimately, the origin of large body size. Across the diversity of Metazoa, there are only few conserved cell signalling pathways known to orchestrate the complex cell and tissue interactions regulating development; thus, modification to these few pathways has been responsible for generating diversity during the evolution of animals. Here, we summarize evidence for the origin and putative function of the intracellular, membrane-bound and secreted components of seven metazoan cell signalling pathways with a special focus on early branching metazoans (ctenophores, poriferans, placozoans and cnidarians) and basal unikonts (amoebozoans, fungi, filastereans and choanoflagellates). We highlight the modular incorporation of intra- and extracellular components in each signalling pathway and suggest that increases in the complexity of the extracellular matrix may have further promoted the modulation of cell signalling during metazoan evolution. Most importantly, this updated view of metazoan signalling pathways highlights the need for explicit study of canonical signalling pathway components in taxa that do not operate a complete signalling pathway. Studies like these are critical for developing a deeper understanding of the evolution of cell signalling.
DOI: 10.6084/m9.figshare.4220253
title: Structural and biophysical properties of h-FANCI ARM repeat protein

description: Fanconi anemia complementation groups – I (FANCI) protein facilitates DNA ICL (Inter-Cross-link) repair and plays a crucial role in genomic integrity. FANCI is a 1328 amino acids protein which contains armadillo (ARM) repeats and EDGE motif at the C-terminus. ARM repeats are functionally diverse and evolutionarily conserved domain that plays a pivotal role in protein–protein and protein–DNA interactions. Considering the importance of ARM repeats, we have explored comprehensive <i>in silico</i> and <i>in vitro</i> approach to examine folding pattern. Size exclusion chromatography, dynamic light scattering (DLS) and glutaraldehyde crosslinking studies suggest that FANCI ARM repeat exist as monomer as well as in oligomeric forms. Circular dichroism (CD) and fluorescence spectroscopy results demonstrate that protein has predominantly α- helices and well-folded tertiary structure. DNA binding was analysed using electrophoretic mobility shift assay by autoradiography. Temperature-dependent CD, Fluorescence spectroscopy and DLS studies concluded that protein unfolds and start forming oligomer from 30°C. The existence of stable portion within FANCI ARM repeat was examined using limited proteolysis and mass spectrometry. The normal mode analysis, molecular dynamics and principal component analysis demonstrated that helix-turn-helix (HTH) motif present in ARM repeat is highly dynamic and has anti-correlated motion. Furthermore, FANCI ARM repeat has HTH structural motif which binds to double-stranded DNA.
DOI: 10.6084/m9.figshare.4220253.v1
title: Structural and biophysical properties of h-FANCI ARM repeat protein

description: Fanconi anemia complementation groups – I (FANCI) protein facilitates DNA ICL (Inter-Cross-link) repair and plays a crucial role in genomic integrity. FANCI is a 1328 amino acids protein which contains armadillo (ARM) repeats and EDGE motif at the C-terminus. ARM repeats are functionally diverse and evolutionarily conserved domain that plays a pivotal role in protein–protein and protein–DNA interactions. Considering the importance of ARM repeats, we have explored comprehensive <i>in silico</i> and <i>in vitro</i> approach to examine folding pattern. Size exclusion chromatography, dynamic light scattering (DLS) and glutaraldehyde crosslinking studies suggest that FANCI ARM repeat exist as monomer as well as in oligomeric forms. Circular dichroism (CD) and fluorescence spectroscopy results demonstrate that protein has predominantly α- helices and well-folded tertiary structure. DNA binding was analysed using electrophoretic mobility shift assay by autoradiography. Temperature-dependent CD, Fluorescence spectroscopy and DLS studies concluded that protein unfolds and start forming oligomer from 30°C. The existence of stable portion within FANCI ARM repeat was examined using limited proteolysis and mass spectrometry. The normal mode analysis, molecular dynamics and principal component analysis demonstrated that helix-turn-helix (HTH) motif present in ARM repeat is highly dynamic and has anti-correlated motion. Furthermore, FANCI ARM repeat has HTH structural motif which binds to double-stranded DNA.
DOI: 10.6084/m9.figshare.4220265.v2
title: Accession numbers from Phylogenetic evidence for the modular evolution of metazoan signalling pathways

description: Communication among cells was paramount to the evolutionary increase in cell type diversity and, ultimately, the origin of large body size. Across the diversity of Metazoa, there are only few conserved cell signalling pathways known to orchestrate the complex cell and tissue interactions regulating development; thus, modification to these few pathways has been responsible for generating diversity during the evolution of animals. Here, we summarize evidence for the origin and putative function of the intracellular, membrane-bound and secreted components of seven metazoan cell signalling pathways with a special focus on early branching metazoans (ctenophores, poriferans, placozoans and cnidarians) and basal unikonts (amoebozoans, fungi, filastereans and choanoflagellates). We highlight the modular incorporation of intra- and extracellular components in each signalling pathway and suggest that increases in the complexity of the extracellular matrix may have further promoted the modulation of cell signalling during metazoan evolution. Most importantly, this updated view of metazoan signalling pathways highlights the need for explicit study of canonical signalling pathway components in taxa that do not operate a complete signalling pathway. Studies like these are critical for developing a deeper understanding of the evolution of cell signalling.
DOI: 10.6084/m9.figshare.4220265.v1
title: Accession numbers from Phylogenetic evidence for the modular evolution of metazoan signalling pathways

description: Communication among cells was paramount to the evolutionary increase in cell type diversity and, ultimately, the origin of large body size. Across the diversity of Metazoa, there are only few conserved cell signalling pathways known to orchestrate the complex cell and tissue interactions regulating development; thus, modification to these few pathways has been responsible for generating diversity during the evolution of animals. Here, we summarize evidence for the origin and putative function of the intracellular, membrane-bound and secreted components of seven metazoan cell signalling pathways with a special focus on early branching metazoans (ctenophores, poriferans, placozoans and cnidarians) and basal unikonts (amoebozoans, fungi, filastereans and choanoflagellates). We highlight the modular incorporation of intra- and extracellular components in each signalling pathway and suggest that increases in the complexity of the extracellular matrix may have further promoted the modulation of cell signalling during metazoan evolution. Most importantly, this updated view of metazoan signalling pathways highlights the need for explicit study of canonical signalling pathway components in taxa that do not operate a complete signalling pathway. Studies like these are critical for developing a deeper understanding of the evolution of cell signalling.
DOI: 10.6084/m9.figshare.4220235
title: Raw data spreadsheet containing radar and wind measures for each night at the station and sweep resolution. from Where in the air? Aerial habitat use of nocturnally migrating birds

description: Processed radar and wind data used for manuscript analyses. Each row represents a sweep measure for a specific radar location (KBGM, KCCX, KDIX, KENX, KDOX, KOKX) and specific date and time.
DOI: 10.6084/m9.figshare.4220232
title: SFigure 1 from Changes in composition and abundance of functional groups of Arctic fungi in response to long-term summer warming

description: Venn diagrams of the five major functional groups of fungi showing the distribution of OTUs among tundra and treatment types. M = moist tundra, D = dry tundra, C = control, T = warming.
DOI: 10.6084/m9.figshare.4220232.v1
title: SFigure 1 from Changes in composition and abundance of functional groups of Arctic fungi in response to long-term summer warming

description: Venn diagrams of the five major functional groups of fungi showing the distribution of OTUs among tundra and treatment types. M = moist tundra, D = dry tundra, C = control, T = warming.
DOI: 10.6084/m9.figshare.4220235.v1
title: Raw data spreadsheet containing radar and wind measures for each night at the station and sweep resolution. from Where in the air? Aerial habitat use of nocturnally migrating birds

description: Processed radar and wind data used for manuscript analyses. Each row represents a sweep measure for a specific radar location (KBGM, KCCX, KDIX, KENX, KDOX, KOKX) and specific date and time.
DOI: 10.6084/m9.figshare.4220208
title: ESM_2_data from Intralocus sexual conflict and insecticide resistance

description: Datasets
DOI: 10.6084/m9.figshare.4220208.v1
title: ESM_2_data from Intralocus sexual conflict and insecticide resistance

description: Datasets
DOI: 10.6084/m9.figshare.4220211
title: Table S2. Gene descriptions from a BLAST alignment to the NCBI nt collection of 126 predicted gene annotations on the rainbow trout genome. from Vive la résistance: genome-wide selection against introduced alleles in invasive hybrid zones

description: Samples are organized by river basin and population. Temp is the mean August stream temperature from NoRWeST (http://www.fs.fed.us/rm/boise/AWAE/projects/NorWeST.html) or lake surface temperature (°C). N is the number of individuals included in RADseq genotying, Nfilter is the number of individuals (from a total of 339) used in subsequent analyses, and pRBT is the proportion rainbow trout ancestry in each population sample estimated from the 9,380 diagnostic SNPs. ;The x-axis is the rainbow trout allele frequency.;For all populations except Cyclone Creek, the rainbow trout allele was at significantly lower frequencies than the genome-wide average, a pattern suggestive of selection against rainbow trout admixture. ;These are the annotations that either overlap or have start or end coordinates within 50 kbp of the start or end coordinate of one or more RAD loci containing outlier SNPs. Entries are ordered by base-pair distance between gene and RAD loci (BP). Italicized gene descriptions indicate one of two RBT gene annotations aligned to two different nt sequences with identical gene descriptions. Descriptions both italicized and underlined indicate one of 3 RBT gene annoations aligned to different nt sequences with identical gene descriptions. Gene descriptions in bold type indicate one of two RBT annotations aligned to the same nt sequence. Gene descriptions underlined and in bold type indicate one of 3 RBT annotations aligned to the same nt sequence. The column headed “% aligned” gives the percent of query bases (bases of the mRNA sequence derived from the RBT gene annotation) that aligned to the NCBI nt sequence.
DOI: 10.6084/m9.figshare.4220211.v1
title: Table S2. Gene descriptions from a BLAST alignment to the NCBI nt collection of 126 predicted gene annotations on the rainbow trout genome. from Vive la résistance: genome-wide selection against introduced alleles in invasive hybrid zones

description: Samples are organized by river basin and population. Temp is the mean August stream temperature from NoRWeST (http://www.fs.fed.us/rm/boise/AWAE/projects/NorWeST.html) or lake surface temperature (°C). N is the number of individuals included in RADseq genotying, Nfilter is the number of individuals (from a total of 339) used in subsequent analyses, and pRBT is the proportion rainbow trout ancestry in each population sample estimated from the 9,380 diagnostic SNPs. ;The x-axis is the rainbow trout allele frequency.;For all populations except Cyclone Creek, the rainbow trout allele was at significantly lower frequencies than the genome-wide average, a pattern suggestive of selection against rainbow trout admixture. ;These are the annotations that either overlap or have start or end coordinates within 50 kbp of the start or end coordinate of one or more RAD loci containing outlier SNPs. Entries are ordered by base-pair distance between gene and RAD loci (BP). Italicized gene descriptions indicate one of two RBT gene annotations aligned to two different nt sequences with identical gene descriptions. Descriptions both italicized and underlined indicate one of 3 RBT gene annoations aligned to different nt sequences with identical gene descriptions. Gene descriptions in bold type indicate one of two RBT annotations aligned to the same nt sequence. Gene descriptions underlined and in bold type indicate one of 3 RBT annotations aligned to the same nt sequence. The column headed “% aligned” gives the percent of query bases (bases of the mRNA sequence derived from the RBT gene annotation) that aligned to the NCBI nt sequence.
DOI: 10.6084/m9.figshare.4220181
title: Supplementary Table 4 from Cranial shape evolution in adaptive radiations of birds: comparative morphometrics of Darwin's finches and Hawaiian honeycreepers

description: A list of skeletal specimens analyzed in this study, along with information about catalogue number and sex (male or female).
DOI: 10.6084/m9.figshare.4220166
title: ESM Table S1 from The genetic and molecular architecture of phenotypic diversity in sticklebacks

description: QTL dataset
DOI: 10.6084/m9.figshare.4220163
title: Worksheet from Gravity–capillary waves in finite depth on flows of constant vorticity

description: Auxiliary calculations maple worksheet
DOI: 10.6084/m9.figshare.4220163.v1
title: Worksheet from Gravity–capillary waves in finite depth on flows of constant vorticity

description: Auxiliary calculations maple worksheet
DOI: 10.6084/m9.figshare.4220136
title: Movielens 1M data set

description: The data set is a reference to grouplens. And it is used for movie recommendation.<br>