cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13839129
title: Neutron activation analysis data of pottery from Pachacamac and other sites in the Lurín Valley, Peru

description: Neutron activation analysis data of pottery from Pachacamac and other sites in the Lurín Valley, Peru
DOI: 10.5281/zenodo.13839032
title: Convergent evolution of NFP-facilitated root nodule symbiosis

description: # NFP

Scripts and data associated with the manuscript "Convergent evolution of NFP-facilitated root nodule symbiosis."

## 00_sequencesThis directory contains NFP/LYR homologs and annotations.

## 02_alignmentsThis directory contains NFP alignments

## 03_treesThis directory contains gene trees and species tree guides for the analyses.

## 04_reconciliationThis directory contains notung files and figures for the gene tree reconciliation analysis

## 05_syntenyThis directory contains files for the synteny analyses. The base directory contains circos plots and a subdirectory `Synteny.2.2020` containing scripts and summary output as well as the following:### Results_Apr01.zipSummary of synteny results### csvs.zipAn archive containing all csvs in the analysis.### fastas.zipsynteny analysis - chr 5 v 8.zip### tsvs.zipAn archive containing all csvs in the analysis.### blasts.zipAn archive containing blast results.### coords.zipAn archive containing genome coordinate files.### gffs.zipAn archive containing GFF annotations.### gff3s.zipAn archive containing GFF annotations.### imgs.zipAn archive containing figure files used for preparing the manuscript. ## figsThis directory contains figure files used for preparing the manuscript.

## Scripts_used_CFThis directory contains submission and shell scripts used to conduct the analyses.
DOI: 10.5281/zenodo.13839033
title: Convergent evolution of NFP-facilitated root nodule symbiosis

description: # NFP

Scripts and data associated with the manuscript "Convergent evolution of NFP-facilitated root nodule symbiosis."

## 00_sequencesThis directory contains NFP/LYR homologs and annotations.

## 02_alignmentsThis directory contains NFP alignments

## 03_treesThis directory contains gene trees and species tree guides for the analyses.

## 04_reconciliationThis directory contains notung files and figures for the gene tree reconciliation analysis

## 05_syntenyThis directory contains files for the synteny analyses. The base directory contains circos plots and a subdirectory `Synteny.2.2020` containing scripts and summary output as well as the following:### Results_Apr01.zipSummary of synteny results### csvs.zipAn archive containing all csvs in the analysis.### fastas.zipsynteny analysis - chr 5 v 8.zip### tsvs.zipAn archive containing all csvs in the analysis.### blasts.zipAn archive containing blast results.### coords.zipAn archive containing genome coordinate files.### gffs.zipAn archive containing GFF annotations.### gff3s.zipAn archive containing GFF annotations.### imgs.zipAn archive containing figure files used for preparing the manuscript. ## figsThis directory contains figure files used for preparing the manuscript.

## Scripts_used_CFThis directory contains submission and shell scripts used to conduct the analyses.
DOI: 10.15468/dl.ssfttb
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxyepoecus inquilinus Kusnezov, 1952"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030307-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13788814
title: Research Data for "Promoting effect of interfacial hole accumulation on photoelectrochemical water oxidation in BiVO4 and Mo doped BiVO4"

description: This dataset supports the Figures and Tables for the publication "Promoting effect of interfacial hole accumulation on photoelectrochemical water oxidation in BiVO4 and Mo doped BiVO4" published in Advanced Powder Materials under https://doi.org/10.1016/j.apmate.2024.100234
DOI: 10.5281/zenodo.13788815
title: Research Data for "Promoting effect of interfacial hole accumulation on photoelectrochemical water oxidation in BiVO4 and Mo doped BiVO4"

description: This dataset supports the Figures and Tables for the publication "Promoting effect of interfacial hole accumulation on photoelectrochemical water oxidation in BiVO4 and Mo doped BiVO4" published in Advanced Powder Materials under https://doi.org/10.1016/j.apmate.2024.100234
DOI: 10.15468/dl.thtbnn
title: Occurrence Download

description: A dataset containing 218636 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Swiss National Bryophyte Databank"
 ]
}

 The dataset includes 218636 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030303-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bge8nf
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Antichthonidris bidentata (Mayr, 1887)"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030308-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27102901
title: Raw gel images

description: Toxoplasma gondii raw electrophoretic gel images.
DOI: 10.6084/m9.figshare.27102901.v1
title: Raw gel images

description: Toxoplasma gondii raw electrophoretic gel images.
DOI: 10.15468/dl.dsu3dt
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pheidole acutidens (Santschi, 1922)"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030309-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9u8anm
title: Occurrence Download

description: A dataset containing 26010 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-3.89604 37.72256,-3.71442 37.72256,-3.71442 37.84002,-3.89604 37.84002,-3.89604 37.72256))"
 ]
}

 The dataset includes 26010 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030310-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dj29m8
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pheidole symbiotica Wasmann, 1909"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030312-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2dpttr
title: CCDC 2225515: Experimental Crystal Structure Determination

description: Related Article: David E. Anderson, Andreu Tortajada, Eva Hevia|2023|Angew.Chem.,Int.Ed.|62|e202218498|doi:10.1002/anie.202218498
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dqq73
title: CCDC 2226365: Experimental Crystal Structure Determination

description: Related Article: Tainára Orlando, Jesus de Maria Perez, Fellipe Freire Santos Farias, Paulo Roberto dos Santos Salbego, Alberto Martinez-Cuezva, Marcos Antonio Pinto Martins, Jose Berna|2023|Cryst.Growth Des.|23|3794|doi:10.1021/acs.cgd.3c00194
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fmk2q
title: CCDC 2253113: Experimental Crystal Structure Determination

description: Related Article: Samuel Ray Lawrence, Tobias Rüffer, Andreas Stasch, Robert Kretschmer|2023|Chem.Commun.|59|7923|doi:10.1039/D3CC01609A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.n6yp3z
title: Occurrence Download

description: A dataset containing 29314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.48813 -0.20855,-78.50316 -0.21979,-78.50657 -0.23434,-78.48475 -0.22863,-78.47333 -0.229,-78.46706 -0.22384,-78.46444 -0.21648,-78.46294 -0.21437,-78.46105 -0.2103,-78.45879 -0.20814,-78.45695 -0.20445,-78.45566 -0.19973,-78.45552 -0.19334,-78.45271 -0.19382,-78.45243 -0.18913,-78.44956 -0.17145,-78.45344 -0.16414,-78.46213 -0.16316,-78.46842 -0.16495,-78.48465 -0.19147,-78.48813 -0.20855))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1500-2024"
 ]
}

 The dataset includes 29314 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030313-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2glhzk
title: CCDC 2281909: Experimental Crystal Structure Determination

description: Related Article: Baoqiu Yu, Wenliang Li, Xiao Wang, Jing-Hong Li, Rui-Biao Lin, Hailong Wang, Xu Ding, Yucheng Jin, Xiya Yang, Hui Wu, Wei Zhou, Jingping Zhang, Jianzhuang Jiang|2023|J.Am.Chem.Soc.|145|25332|doi:10.1021/jacs.3c09001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gyhrp
title: CCDC 2292473: Experimental Crystal Structure Determination

description: Related Article: Dmitry K. Sinitsa, Ekaterina K. Pylova, Olga A. Mironova, Denis A. Bashirov, Alexey A. Ryadun, Taisiya S. Sukhikh, Sergey N. Konchenko|2024|Dalton Trans.|53|2181|doi:10.1039/D3DT03511E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hm93k
title: CCDC 2312448: Experimental Crystal Structure Determination

description: Related Article: Dmitry K. Sinitsa, Ekaterina K. Pylova, Olga A. Mironova, Denis A. Bashirov, Alexey A. Ryadun, Taisiya S. Sukhikh, Sergey N. Konchenko|2024|Dalton Trans.|53|2181|doi:10.1039/D3DT03511E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hgb7k
title: CCDC 2307678: Experimental Crystal Structure Determination

description: Related Article: Etienne A. LaPierre, Brian O. Patrick, Ian Manners|2024|J.Am.Chem.Soc.|146|6326|doi:10.1021/jacs.4c00148
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j36zv
title: CCDC 2326797: Experimental Crystal Structure Determination

description: Related Article: Shuilian Xu, Qiujie Wang, Thayalan Rajeshkumar, Shengjie Jiang, Laurent Maron, Xin Xu|2024|J.Am.Chem.Soc.|146|19590|doi:10.1021/jacs.4c07390
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3886/e194108
title: Data and Code for: Shocks, Frictions, and Inequality in US Business Cycles

description: We show how a heterogeneous-agent New-Keynesian (HANK) model with incomplete markets and portfolio choice can be estimated in state space using a Bayesian approach. To render estimation feasible, the structure of the economy can be exploited and the dimensionality of the model automatically reduced based on the Bayesian priors. We apply this approach to analyze how much inequality matters for the business cycle and vice versa. Even when the model is estimated on aggregate data alone and with a set of shocks and frictions designed to match aggregate data, it broadly reproduces observed US inequality dynamics.
DOI: 10.3886/e194108v1-156965
title: Data and Code for: Shocks, Frictions, and Inequality in US Business Cycles

description: We show how a heterogeneous-agent New-Keynesian (HANK) model with incomplete markets and portfolio choice can be estimated in state space using a Bayesian approach. To render estimation feasible, the structure of the economy can be exploited and the dimensionality of the model automatically reduced based on the Bayesian priors. We apply this approach to analyze how much inequality matters for the business cycle and vice versa. Even when the model is estimated on aggregate data alone and with a set of shocks and frictions designed to match aggregate data, it broadly reproduces observed US inequality dynamics.
DOI: 10.5517/ccdc.csd.cc2k4x9y
title: CCDC 2358210: Experimental Crystal Structure Determination

description: Related Article: Erick Nuñez Bahena, Kimia Hosseini, Sheila Galván Curto, Laurel L. Schafer|2024|Chemical Science|15|10571|doi:10.1039/D4SC00636D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.13838986
title: Centerless grinding dataset

description: Dataset of centerless grinding process outcomes (work piece roundness), generated by an HiFi model of the process.

See Readmi.pdf the description of the input vector.

Contact: marco.leonesio@stiima.cnr.it
DOI: 10.5281/zenodo.13838987
title: Centerless grinding dataset

description: Dataset of centerless grinding process outcomes (work piece roundness), generated by an HiFi model of the process.

See Readmi.pdf the description of the input vector.

Contact: marco.leonesio@stiima.cnr.it
DOI: 10.5281/zenodo.13839053
title: Data for Discharge & Evaluation Exercise

description: Dataset needed for the evaluation and attribution exercises for the winter term 2024/25Datasets:



GHM.zip: Simulated discharges of the global hydrological models participating in ISIMIP3.

CaMa.zip: Simulated discharges of the global hydrological models participating in ISIMIP3 re-routed with the CaMa-Flood model.

Observations.zip: Global dataset with observed discharges at 525 stations.
DOI: 10.5281/zenodo.13839054
title: Data for Discharge & Evaluation Exercise

description: Dataset needed for the evaluation and attribution exercises for the winter term 2024/25Datasets:



GHM.zip: Simulated discharges of the global hydrological models participating in ISIMIP3.

CaMa.zip: Simulated discharges of the global hydrological models participating in ISIMIP3 re-routed with the CaMa-Flood model.

Observations.zip: Global dataset with observed discharges at 525 stations.
DOI: 10.15468/dl.xen6d6
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Linepithema leucomelas (Emery, 1894), Linepithema hirsutum Escárraga & Guerrero, 2016, Linepithema cryptobioticum Wild, Linepithema anathema, Solenopsis solenopsidis (Kusnezov, 1953), Pseudoatta argentina Gallardo, 1916, Pheidole microgyna Wheeler, 1928, Pheidole argentina (Bruch, 1932))"
 ]
}

 The dataset includes 138 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030314-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s3jsj9
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Grapholita molesta (Busck, 1916)"
 ]
}

 The dataset includes 394 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030315-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6crmkx
title: Occurrence Download

description: A dataset containing 1663331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is Plantae",
 "Year 2020-2024"
 ]
}

 The dataset includes 1663331 records from 858 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030311-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3g5gbq
title: Occurrence Download

description: A dataset containing 616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Stephanitis pyri (Fabricius, 1775)"
 ]
}

 The dataset includes 616 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030316-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhb8bm
title: Occurrence Download

description: A dataset containing 18122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Taxon occurrence data for the FungalRoot database",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 18122 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030317-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26207/p9fd-qf11
title: A stochastic encoder using point defects in two-dimensional materials
DOI: 10.5281/zenodo.12754798
title: Tensile strength of Ganoderma pure mycelium - raw data

description: The dataset consists of tensile strength values of pure mycelium of Ganoderma lingzhi and Ganoderma sessile produced using liquid state fermentation. The substrate for liquid state fermentation was supplemented with 0,5% of lignin and 2% of lignin (reference was 0% lignin). Raw data from universal testing machine are also provided. Another variant is a modification of obtained mycelium leather with glycerol treatment (immersion of samples in 20% glycerol solution for 24 hours).
DOI: 10.15468/dl.3fafcj
title: Occurrence Download

description: A dataset containing 7979 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "GadmGid is one of (COL.14.22_2)"
 ]
}

 The dataset includes 7979 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030318-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7094932
title: NGHP-01 Site 19 (Mahanadi Basin, Bay of Bengal) multi-proxy paleoenvironmental record since 110 ka

description: In this dataset we include carbon and nitrogen elemental and isotopic (TOC, TN, CaCO3, d13C-TOC, d15N-TN), biogenic silica, X-ray fluorescence (XRF), grain size, physical property core logs, benthic foraminifer O and C isotopes, planktic foraminifer radiocarbon ages, and mass accumulation rate data from India National Gas Hydrate Program Expedition 01 Hole 19B. Hole 19B is located in the Mahanadi Basin ~70 km off the eastern Indian Margin in 1422 m water depth (18° 58.65680' N, 85° 39.52020' E). These data are from the upper 12 m below seafloor, corresponding to the last 110 kyr.

Details of these analyses are published in:

Phillips, S.C., Johnson, J.E., Giosan, L., and Rose, K., 2014. Monsoon-influenced variation in productivity and lithogenic sediment flux since 110 ka in the offshore Mahanadi Basin, northern Bay of Bengal. Marine and Petroleum Geology 58A, 502-525, https://doi.org/10.1016/j.marpetgeo.2014.05.007 Link
DOI: 10.5281/zenodo.7094933
title: NGHP-01 Site 19 (Mahanadi Basin, Bay of Bengal) multi-proxy paleoenvironmental record since 110 ka

description: In this dataset we include carbon and nitrogen elemental and isotopic (TOC, TN, CaCO3, d13C-TOC, d15N-TN), biogenic silica, X-ray fluorescence (XRF), grain size, physical property core logs, benthic foraminifer O and C isotopes, planktic foraminifer radiocarbon ages, and mass accumulation rate data from India National Gas Hydrate Program Expedition 01 Hole 19B. Hole 19B is located in the Mahanadi Basin ~70 km off the eastern Indian Margin in 1422 m water depth (18° 58.65680' N, 85° 39.52020' E). These data are from the upper 12 m below seafloor, corresponding to the last 110 kyr.

Details of these analyses are published in:

Phillips, S.C., Johnson, J.E., Giosan, L., and Rose, K., 2014. Monsoon-influenced variation in productivity and lithogenic sediment flux since 110 ka in the offshore Mahanadi Basin, northern Bay of Bengal. Marine and Petroleum Geology 58A, 502-525, https://doi.org/10.1016/j.marpetgeo.2014.05.007 Link