cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26188/5b5550f4268d4
title: Summary of path exchange hybrid life cycle results for aluminium extruded, flat glass, 20MPa concrete and cold rolled steel in Australia

description: This dataset provides a summary of the hybridisation process combining Australian process data (AusLCI) with Australian input-output data (114 sectors). <br>
DOI: 10.26188/5b592f305226b
title: Fournier-Level_etal2018_DerivedData.zip

description: Derived data supporting the analysis published in Fournier-Level et al. (2018, submitted)<br>
DOI: 10.26188/5b5a630cce4ba
title: Richardson et al. 2018 Female-limited Wolbachia in Drosophila all data

description: All data presented in Richardson et al. (2018) A Wolbachia infection from Drosophila that causes cytoplasmic incompatibility despite low prevalence and densities in males
DOI: 10.26188/5b63e0ee98907
title: Puebla TLOG.csv

description: 16,314 consecutive high-resolution (millikelvin) ground temperature (°C) records collected at 15-minute intervals from (UTM time) 01:30 28 March 2015 to 23:45 13 September 2015.Depths 0.00m, 0.10m, 0.30m, 0.50m, 0.70m, 0.90m and 1.10m.Location: 19.92216°N, 98.12475°WFloor of a pine forest on the outskirts of the township of Cruz Colorada, Puebla, Mexico.
DOI: 10.26188/5b6bce14a6f31
title: Carrapateena TLOG.csv

description: 24,931 consecutive time-stamped high-resolution (millikelvin) ground temperature (°C) records collected at approximately 15-minute intervals from (UTM time) 07:19 05 December 2012 to 22:26 21 August 2013.Depths 0.10m, 0.30m, 0.50m, 0.70m, 0.90m and 1.10m.Location: 31.21808°S, 137.49747°ESemi-arid gibber plain near Carrapateena mine site in South Australia.
DOI: 10.26188/5b6bd475ea7ea
title: Tynong TLOG.csv

description: 9,401 consecutive time-stamped high-resolution (millikelvin) ground temperature (°C) records collected at 15-minute intervals from (UTM+10 time) 15:13 20 December 2016 to 13:13 28 March 2017.Depths 0.00m, 0.10m, 0.30m, 0.50m, 0.70m, 0.90m and 1.10m.Location: 38.06389°S, 145.63472°EField on undulating hills cleared of original riparian forest, Tynong North, Victoria, Australia.
DOI: 10.26188/5b760d977ed75
title: Aponte et al. Data

description: Aponte et al. dataset
DOI: 10.26188/5b8b4c18916ff
title: The role of the intestinal microbiota in the pathogenesis of chronic enteropathies and their interplay with the immune system

description: The intestinal microbiota and its associated genome is collectively called the gastrointestinal (GI) microbiome; and is composed of crucial components that help not only to determine host biology but also to maintain host physiology. Dysregulation of the gastrointestinal microbiome has been associated with a range of diseases in people such as inflammatory bowel disease (IBD), diabetes and obesity. Previous studies have found dysbiosis and a reduced bacterial diversity in dogs with chronic enteropathies (CE). However, the precise nature of the intestinal microbiota dysfunction and whether the microbiota has a causative role or is secondarily affected remain to be elucidated. The first step in understanding the relationship between the gut microbiota and disease is the characterisation of the normal gut microbiota, how it is established and how stable it is during different periods of life. In this work, we assessed the dynamics and stability of faecal microbiota over time in healthy dogs of different age groups, and the development of the microbiota from birth in puppies, and the association with the maternal microbiome. Next, we characterised highly immunoglobulin A and G coated bacteria in faecal samples from dogs with chronic enteropathies using flow cytometry and 16S rRNA sequencing and assessed their correlation with disease stage and resolution of the clinical signs. Finally, we characterised the expression of thymic stromal lymphopoetin (TSLP), a cytokine that is produced in response to bacterial contact, in the intestine of healthy dogs and its correlation with disease activity in dogs with chronic enteropathies. The results reported here, help to understand the assembly of the gut microbiota, its interaction with the immune system and emphasise on the importance of longitudinal studies and personalised approach in order to understand the pathogenesis and the role of the microbiota in intestinal diseases in dogs. <br>
DOI: 10.26188/5b8cb6108aada
title: Assemblies (zipped directory)

description: 1092 Klebsiella pneumoniae genome assemblies.<br>These data are described in Wyres et al "Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae."
DOI: 10.26188/5b8cb63cbcebd
title: Annotations (zipped directory)

description: 1092 Klebsiella genomes annotated with Prokka v1.11. <br><br>These data are described in Wyres et al. "Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae."
DOI: 10.26188/5b8cb6558ce61
title: Reference chromosomes (zipped directory)

description: 28 complete Klebsiella pneumoniae chromosomes.<br>These data are described in Wyres et al "Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae."<br>
DOI: 10.4225/49/5a08cfeae8a9d
title: Supplementary Table 19

description: Kegg analysis of thylacine positively selected genes
DOI: 10.4225/49/5a08d04077921
title: Supplementary Table 20

description: KEGG analysis of canid positively selected genes
DOI: 10.4225/49/5a08d094925c4
title: Supplementary Table 23

description: Alignments of retroposon markers
DOI: 10.4225/49/5a08d5e776264
title: Table S3

description: Putative craniofacial cis-regulatory elements
DOI: 10.4225/49/5a08d69c6484b
title: Table S9

description: Wolf accelerated regions (WARs)
DOI: 10.4225/49/5a08d6cbac746
title: Table S10

description: Thylacine-Wolf Accelerated Regions (TWARs)
DOI: 10.4225/49/5a08d7265fc0f
title: Table S14

description: VISTA enhancers examined for overlap with thylacine and wolf accelerated regions
DOI: 10.4225/49/5a08d778b9cba
title: Table S19

description: Pairwise comparisons of branch lengths between UCSC and study tree models.
DOI: 10.4225/49/5a2125ea06c15
title: Peripheral neural responses to cochlear stimulation via electrically evoked compound action potentials (ECAPs) of differing pulse distance and interphase gap

description: These data contain minimum and maximum Current Levels (CLs) that evoke ECAPs within the recoverable ECAP dynamic range for 52 electrodes of 10 cochlear implant users. <br>Data were collected with stimulus Interphase Gap (IPG) settings of 8 and 25 µS, and Pulse Distance (PD) settings of 25 and 40 µS, for each electrode. <br>These data are paired with four-interval-forced-choice behavioural thresholds for stimuli delivered at 40, 500, 1000, and 2000 pps (pulses per second), with IPG 8 and PD 25 µS.<br>These data were collected for the purpose of determining whether there is a correlation between the effect of changing PD/IPG on ECAP amplitude, and the slope of behavioural thresholds across pps conditions.<br>This dataset was utilised in <br>&gt;Smale, N. (2015) <i>ECAP measures predict cochlear implant behavioural thresholds</i> (Master’s thesis). The University of Melbourne.&gt;McKay, C. M., & Smale, N. (2017). The relation between ECAP measurements and the effect of rate on behavioral thresholds in cochlear implant users. <i>Hearing research</i>, <i>346</i>, 62-70.
DOI: 10.4225/49/5a2e3b825ffb9
title: Warm seasonal rainfall

description: <b>Warm</b> season* rainfall for the eight Natural Resource Management (NRM)** regions ---------------------------------------------------------------------------<br>File format provided: netcdf and csv format<br>
				
			
		---------------------------------------------------------------------------<br><b>1)</b> Instrumental regional averages for each NRM region (1900-2015) based on the gridded Australian Water Availability Project (AWAP)<br><b>2)</b> Reconstructed regional averages for each NRM region (1200-2015) based on a network of palaeoclimate records from the Southern Hemisphere<br>---------------------------------------------------------------------------<br>* Warm season (average precipitation in: Oct, Nov, Dec, Jan, Feb, Mar)<br>** NRM regions are defined by the CSIRO and Bureau of Meteorology (https://www.climatechangeinaustralia.gov.au/en/climate-projections/about/modelling-choices-and-methodology/regionalisation-schemes/) and should cited as followed: CSIRO and Bureau of Meteorology 2015, Climate Change in Australia Information for Australia's Natural Resource Management Regions: Technical Report, CSIRO and Bureau of Meteorology, Australia,2015.<br>Regions: <b>CS</b>-Central Slopes<b>EC</b>-East Coast<b>MB</b>-Murray Basin<b>MN</b>-Monsoonal North<b>R</b>-Rangelands<b>SS</b>-Southern Slopes<b>SSWF</b>-Southern and South-Western Flatlands<b>WT</b>-Wet Tropics<br><br><br>Reference and details in: Freund, M., Henley, B. J., Karoly, D. J., Allen, K. J. and Baker, P. J.: Multi-century cool- and warm-season rainfall reconstructions for Australia's major climatic regions, Clim. Past, 13(12), 1751–1770, doi:10.5194/cp-13-1751-2017, 2017.<br>
DOI: 10.4225/49/5a372309de006
title: Dataset for 'Central orexin (hypocretin) 2 receptor antagonism reduces ethanol self-administration, but not cue-conditioned ethanol-seeking, in ethanol-preferring rats'

description: Dataset for a paper published in the International Journal of Neuropsychopharmacology.<br><em>International Journal of Neuropsychopharmacology</em>, Volume 16, Issue 9, 1 October 2013, Pages 2067–2079.
DOI: 10.4225/49/5a3724308d989
title: Dataset for 'Orexin‐1 receptor signalling in the prelimbic cortex and ventral tegmental area regulates cue‐induced reinstatement of ethanol‐seeking in iP rats'

description: Dataset for a paper published in Addiction Biology.<br>Brown, R. M., Kim, A. K., Khoo, S. Y.-S., Kim, J. H., Jupp, B., and Lawrence, A. J. (2016) Orexin-1 receptor signalling in the prelimbic cortex and ventral tegmental area regulates cue-induced reinstatement of ethanol-seeking in iP rats. <em>Addiction Biology, 21</em>: 603–612.
DOI: 10.4225/49/5a3c3794089c8
title: Summaries of surface meteorological measurements at Melbourne Airport (Australia), from 1990-01-01 to 2015-08-09

description: Surface weather data recorded at the Melbourne Airport observing site (Australia), from 1990-01-01 to 2015-08-09<br>This site is operated by the Australian Bureau of Meteorology. Site details are as follows;Lat: -37.67, Lon: 144.83, Height above sea level: 113.4 m<br>Bureau of Meteorology station ID: 086282<br>Variables included:- Date: the local calendar date across which variables are summarised- WS_DailyMean: daily mean wind speed (units = km/h)- WD_DailyMean: direction of the daily mean (U,V) wind vector (units = degrees clockwise from north)- PR_DailySum: total precipitation from midnight to midnight (units = mm)- TM_DailyMean: daily mean temperature (units = degrees celcius)- RH_DailyMean: daily mean relative humidity (units = percentage)- U_DailyMean: mean daily east-west wind component (units = km/h)- V_DailyMean: mean daily north-south wind component (units = km/h)- WS_Midday: wind speed at midday (units = km/h)- WD_Midday: wind direction at midday (units = degrees clockwise from north)- TM_Midday: temperature at midday (units = degrees celcius)- RH_Midday: relative humidity at midday (units = percentage)- U_Midday: east-west wind component at midday (units = km/h)- V_Midday: north-south wind component at midday (units = km/h)- TS: The code "TS" (denoting thunderstorm) appeared in the METAR/SPECI records at some point in this day. These are based on meteorological observer reports from this site.<br>Notes:1) These data are based on half-hourly summaries supplied by the Bureau of Meteorology.2) When midday values were not available, the snapshot values were taken from the nearest time-point.3) When preparing these summaries, the timing of midday and boundaries of each day were based on local time.<br>Data quality issues:1) Precipitation was not available in this record before 1999-03-02.2) The METAR/SPECI fields were not archived consistently prior to 1999-03-01.<br>The original data can be obtained from the Australian Bureau of Meteorology through their Climate Data services. See www.bom.gov.au for further information<br>Processed by Jeremy Silver, University of Melbourne, jeremy.silver@unimelb.edu.au (2017-12-20)<br>
DOI: 10.4225/49/5a86703757384
title: Chapter Tables

description: Excel Spreadsheet containing Tables included in the Chapter
DOI: 10.4225/49/5a8670974d186
title: Adler Book: Chapter on Leptospiral Genomics: Archive Containing Nullarbor Reports, Excel Spreadsheet version of Tables

description: Archive contains the Nullarbor reports (https://github.com/tseemann/nullarbor) used to produce Figures 1 to 7 in the Leptospiral Genomics Chapter<br><br>Archive contains seven folders**(After decompressing) to view the Nullarbor Report open the 'index.html' file in your web browser**<br>Spreadsheet: Tables 1 to 6<br>
DOI: 10.4225/49/5a8f946b0af93
title: Sievers et al. Stormwater wetlands can function as ecological traps for urban frogs. Data

description: Mesocosm data
DOI: 10.4225/49/5a8f946ddcb4e
title: Sievers et al. Stormwater wetlands can function as ecological traps for urban frogs. Data

description: Mesocosm data
DOI: 10.4225/49/5aaf034cf0900
title: Coding club data example

description: Data set simulated for training purposes. Contains simulated data on individual plant heights measured at many sites ("height") and average daily maximum temperature (in degrees C) at the sampled sites ("temperature"). The units column gives units of height measurement.
DOI: 10.4225/49/5ac3670f83717
title: Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens

description: 1) R code to parse data downloaded from NCBI to generate plots of genome size, genewise G+C content, AMR gene load and plasmid load for Gram negative opportunistic pathogens K. pneumoniae, E. coli, E. cloaceae, P. aeruginosa and A. baumannii. 2) Results of querying the IMNGS 16S database (imngs.org) for the above species, and R code to plot the frequency of detection of each species in samples of different source types.
DOI: 10.4225/49/5acee30523515
title: Urban mobility and spatial distribution of infection

description: This repository contains the simulation model source code, simulation output files, and analysis scripts that are required to reproduce all of the manuscript figures.<br>
DOI: 10.4225/49/5afa7f280c98d
title: trait-data-2018-May-15 - final THIS_ONE v3_FINAL.csv

description: Example data set for QAECO coding club.
DOI: 10.4225/49/5b0658afef2bf
title: Deepbinner: negative control set classifications

description: This is a tab-delimited table of Oxford Nanopore read classifications for a negative control test set used in the Deepbinner manuscript.
DOI: 10.4225/49/5b06794a1addf
title: freshwater_macroinvertebrate_DNAbarcodes.fasta

description: Freshwater aquatic macroinvertebrate DNA barcode reference library July 2017. Fasta file of sequences downloaded from GenBank and BOLD Systems
DOI: 10.4225/49/5b0b803fb439e
title: Deepbinner: negative control set basecalled reads

description: These are the basecalled (FASTQ format) reads for the negative control test set used in the Deepbinner manuscript.
DOI: 10.4225/49/5b0de625052f9
title: Relationships between plant drought response, traits and climate of origin for green roof plant selection.xlsx

description: Under well-watered (WW) and water deficit (WD) conditions, we assessed morphological responses (leaf area, shoot mass, relative growth rate) to water availability; evapotranspiration rate (ET) and midday water potential (ΨMD) were used to evaluate species water use and drought response.
DOI: 10.4225/49/5b0f045555566
title: Estimating the completeness of death registration: an empirical method - data

description: This is the dataset used for the PLOS One paper 'Estimating the completeness of death registration: an empirical method'. The code used to produce the results for the paper can be found in figshare under the following title:<br>'Estimating the completeness of death registration: an empirical method - code'<br>
DOI: 10.4225/49/5b0f62dc23b4c
title: CDD data and scripts

description: Data and scripts to accompany the manuscript https://doi.org/10.1101/334243.
DOI: 10.4225/49/5b2b41da4f39d
title: 2014-15 Australian input-output data and associated environmental satellites (energy, water and greenhouse gas emissions)

description: Compilation of input-output data used in Crawford, R.H., Stephan, A., Bontinck, P-A (2018) A hybrid life cycle inventory database for Australia. Four files are provided, including the Australian supply-use table for 2014-15 as published by the Australian Bureau of Statistics. Three environmental flows are also provided (energy, water, carbon), and each file provide the details of the calculation done on the original data. <br>
DOI: 10.26188/5b7634eecff73
title: PLOS data submitted.for research article: Non-symbolic magnitudes are represented spatially: Evidence from a non-symbolic SNARC task

description: Data for journal article: Non-symbolic magnitudes are represented spatially: Evidence from a non-symbolic SNARC task
DOI: 10.26188/5b85dbbab4127
title: Kujala et al (2018) Not all data are equal: Influence of data type and amount in spatial conservation prioritisation - Data

description: Data for Kujala et al (2018) Not all data are equal: Influence of data type and amount in spatial conservation prioritisation. Methods in Ecology and Evolution, 9(11): 2249-2261. <br>https://doi.org/10.1111/2041-210X.13084<br><br>Tables gives simulation results where 1) new species is added to a prioritisation done without ("_BD_n20_") or with costs ("_cost_n20_"); 2) landscape condition is accounted for but it affects onpy p-proportion of the species; and 3) condition layer is changed by x%. Table headings correspond to:<br><br><b>n_B</b> = number of species used in the prioritisation<b>p</b> = proportion of species affected by local condition<b>x</b> = average change in condition values<b>cor</b> = spatial correlation (Spearman's rank coefficient) between priorities and the added/changed layer values before addition/change<b>exp</b> = expected average change in cell values after addition/change<b>obs_min/mean/max</b> = minimum, mean and maximum of the observed average change in cell values (average across repeats)<b>rho_min/mean/max</b> = minimum, mean and maximum correlation (Pearson's rho) between old and new priorities of cells<b>_S/_M/_L</b> = small, medium or large, respectively, ranged values in the added/changed layer (for cost and condition analysis only)<b>_sd</b> = standard deviation <br> <br>Updates to this data:7 Nov 2018 - Added explanations and full reference to the published article.7 Nov 2018 - Data tables with condition analysis replaced. Original tables incorrectly showed results of the cost analysis.
DOI: 10.26188/5b8cb66d3a458
title: Gubbins recombination analysis files (zipped directory)

description: 28 pseudo chromosomal alignments (inputs for Gubbins)28 Gubbins recombination prediction files28 Gubbins branch statistics files<br>These data are described in Wyres et al. "Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae."
DOI: 10.26188/5b8cb681c5000
title: Pan-genome (zipped directory)

description: Klebsiella pneumoniae pan-genome analysis files and Python script.<br>These data are described in Wyres et al "Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae."
DOI: 10.26188/5b8cb6b73c8f2
title: Defence mechanisms (zipped directory)

description: Cas gene and restriction enzyme reference sequences.<br>These data are described in Wyres et al "Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae."
DOI: 10.26188/5b8cb6d3127f5
title: CG15 subclade analyses (zipped directory)

description: Gubbins recombination detection, BEAST molecular dating xml and pan-genome analysis files for CG15 split by subclades; 'KL2' and 'other' (diverse K-loci).<br>These data are described in Wyres et al "Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae."
DOI: 10.26188/5bd5c405c6833
title: Material Quantities for 6 Composite Tall Buildings in South Korea

description: In order to evaluate the embodied GHG emissions of tall buildings and demonstrate the use of a proposed design framework, three reinforced concrete and three composite tall buildings located in South Korea were analysed. The buildings were constructed between 2002 and 2004 and range from 46 to 73 storeys tall. Five of the case study buildings are in the city of Seoul and one is in Busan. The material quantities for the structural system were published by Cho et al. (2004). The material quantities were complimented by this project with various building parameters.
DOI: 10.26188/5bf3d60c4ffae
title: Accounting for healthcare-seeking behaviours and testing practices in real-time influenza forecasts: supplementary materials

description: These are the supplementary materials (input data, simulation code, and visualisation scripts) for our article "Accounting for healthcare-seeking behaviours and testing practices in real-time influenza forecasts".<br><b>Important:</b> please read the step-by-step instructions in the file README.md.<br>
DOI: 10.26188/5bf75966a7e78
title: Global synthesis of conservation studies reveals the importance of small habitat patches for biodiversity

description: BEWARE - this is a very large dataset! <br>This is the full dataset used in the manuscript Wintle et al. (2018) <i>Global synthesis of conservation studies reveals the importance of small habitat patches for biodiversity</i>. To reproduce the analysis, simply load all of the files into a folder called 'data_for_web', open the Rproject in RStudio, and implement the scripts in the RScript 'small patches model - FINAL.R'. You may need to load in the RLibraries 'raster', 'effects' and 'spdep'. Contact brendanw@unimelb.edu.au if you have any problems. <b></b>
DOI: 10.26188/5c0a6973e4d43
title: SciRep_Firestone_D1_S1.zip

description: Supplementary Materials (S1):<br>Simulated FMD outbreak datasets and descriptive statistics<br>Multiple file types (zip archive)
DOI: 10.26188/5c19a23c806e8
title: Can the turgor loss point be used to assess drought response to select plants for green roofs in hot and dry climates?

description: The water potentials at turgor loss point of 20 green roof shrub species.
DOI: 10.26188/5c19a7a695fa9
title: Is plant survival on green roofs related to their drought response, water use or climate of origin

description: Plant survival of 15 shrubs over one year.
DOI: 10.26188/5c2c5d0ed52d7
title: High-resolution global urban growth projection based on multiple applications of the SLEUTH urban growth model

description: This is the GUGPS dataset (Global urban growth projection using SLEUTH urban growth model) published at Scientific Data. Please read the README.docx file inside carefully prior to use.
DOI: 10.26188/5c2f00a1c7c1c
title: Untitled Item

description: GSE122126
DOI: 10.26188/5c2f0ca107574
title: sample 450k

description: sample 450k
DOI: 10.26188/5c32d147737c0
title: sample_450K

description: sample_450K
DOI: 10.26188/5c35dd5707faf
title: Prevalence and correlates of lifetime and recent HIV testing among men who have sex with men (MSM) who use mobile geo-social networking applications in Greater Tokyo Data Set

description: Data set for Prevalence and correlates of lifetime and recent HIV testing among men who have sex with men (MSM) who use mobile geo-social networking applications in Greater Tokyo.
DOI: 10.26188/5c3ea079d4ed3
title: sample_WGBS

description: sample_WGBS