cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/inscriptifact-ouc110599463
title: Persepolis Fortification Elamite Tablet 0857, PF 0857

description: [Text Description:] Administrative text with seals PFS 0006, PFS 0972 ❧ [Text or Publication Number Note:] PF 0857 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text, Aramaic ink inscription. Seal impressions PFS 0006 left edge; PFS 0972 reverse, upper edge. ❧ [Physical Object Note:] Cracks on obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110597630
title: Persepolis Fortification Aramaic Text 388, PFAT 388

description: [Text Description:] Administrative text with seals PFUTS 0109s; PFATS 0376*s; PFATS 0377s. ❧ [Text or Publication Number Note:] PFAT 388, Bowman 388 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink and incised inscription. Seal impressions PFUTS 0109s on upper edge; PFATS 0376*s on reverse; PFATS 0377s on flat edge.
DOI: 10.15468/dl.jxtmtu
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Montia diffusa (Nutt.) Greene)"
 ]
}

 The dataset includes 310 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009994-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11396013
title: Image analysis data for Downie et al. (2025)

description: Image analysis outputs that can be processed using code available at https://github.com/quantixed/p065p038

A preprint of the manuscript is available at https://doi.org/10.1101/2024.05.31.596797.



LBR cluster analysis (plasma membrane, 3D) - SJR233 analysis of LD317

LBR cluster analysis (plasma membrane, 2D movie) - SJR217 analysis of LD295

Mitochondria-ER contact analysis from SBF-SEM - SJR242

Line profile comparison - SJR266 analysis of LD237, LD239, LD352, LD365, LD360

Thapsigargin experiment - SJR265 analysis of LD446

Sec61 and LBR cluster analysis (3D) under different promoters - Sec61Expr

LBR cluster sizes after 2h or 4h (3D) - LBR_LongTerm


All other data for plot recreation can be found in the GitHub repo.
DOI: 10.5281/zenodo.11396014
title: Image analysis data for Downie et al. (2024)

description: Image analysis outputs that can be processed using code available at https://github.com/quantixed/p065p038

A preprint of the manuscript is available at https://doi.org/10.1101/2024.05.31.596797.



LBR cluster analysis (plasma membrane, 3D) - SJR233

LBR cluster analysis (plasma membrane, 2D movie) - SJR217

Mitochondria-ER contact analysis from SBF-SEM - SJR242


All other data for plot recreation can be found in the GitHub repo.
DOI: 10.5281/zenodo.14011426
title: Image analysis data for Downie et al. (2024)

description: Image analysis outputs that can be processed using code available at https://github.com/quantixed/p065p038

A preprint of the manuscript is available at https://doi.org/10.1101/2024.05.31.596797.



LBR cluster analysis (plasma membrane, 3D) - SJR233 analysis of LD317

LBR cluster analysis (plasma membrane, 2D movie) - SJR217 analysis of LD295

Mitochondria-ER contact analysis from SBF-SEM - SJR242

Line profile comparison - SJR266 analysis of LD237, LD239, LD352, LD365, LD360

Thapsigargin experiment - SJR265 analysis of LD446


All other data for plot recreation can be found in the GitHub repo.
DOI: 10.5281/zenodo.15263507
title: Image analysis data for Downie et al. (2025)

description: Image analysis outputs that can be processed using code available at https://github.com/quantixed/p065p038

A preprint of the manuscript is available at https://doi.org/10.1101/2024.05.31.596797.



LBR cluster analysis (plasma membrane, 3D) - SJR233 analysis of LD317

LBR cluster analysis (plasma membrane, 2D movie) - SJR217 analysis of LD295

Mitochondria-ER contact analysis from SBF-SEM - SJR242

Line profile comparison - SJR266 analysis of LD237, LD239, LD352, LD365, LD360

Thapsigargin experiment - SJR265 analysis of LD446

Sec61 and LBR cluster analysis (3D) under different promoters - Sec61Expr

LBR cluster sizes after 2h or 4h (3D) - LBR_LongTerm


All other data for plot recreation can be found in the GitHub repo.
DOI: 10.15468/dl.28mjzp
title: Occurrence Download

description: A dataset containing 1121157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Nigeria",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1121157 records from 813 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009982-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28207481
title: Ribosomal protein EcoPhylo interactive interfaces for Schechter et al. (2025)

description: The anvi'o contigs-db and profile-db files in this folder represent the EcoPhylo interactive interfaces for all datasets run in Schechter et al. (2025). This includes:Human oral cavity (<i>rpL19</i>, <i>rpS15</i>, and <i>rpS2</i>)Human gut (<i>rpS15</i>, <i>rpS16</i>, and <i>rpL19</i>)Learn more about this dataset and the study here:https://merenlab.org/data/ecophylo-ribosomal-proteins
DOI: 10.15468/dl.m7ce33
title: Occurrence Download

description: A dataset containing 6493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Viburnum edule (Michx.) Raf.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6493 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009995-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgxp7j
title: Occurrence Download

description: A dataset containing 489235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Cardellina rubrifrons (Giraud Jr, 1841), Cardellina pusilla (A.Wilson, 1811))",
 "Year 2022-2025"
 ]
}

 The dataset includes 489235 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009983-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.np9kwz
title: Occurrence Download

description: A dataset containing 119573 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lantana camara L."
 ]
}

 The dataset includes 119573 records from 996 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009979-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48577/jpl.5yrf0p
title: SWIM -- Sensing with Independent Micro-swimmers (NIAC Phase I, Final Report)

description: No abstract available.
DOI: 10.5281/zenodo.13273040
title: Salinity and major ion composition in United States lakes and their natural and human drivers

description: This dataset includes salinity and major ion data and their natural and human drivers for lakes across the conterminous US. The data were collected for and analyzed in the paper: 

Sun, X., Cheruvelil, K.S., Hanly, P.J., Webster, K.E., & Soranno, P.A. Natural and human drivers of salinity and major ion composition in United States lakes. Under Review.

The conductivity data all factors untrans.csv dataset contains salinity (as in specific conductance) and untransformed natural and human factor data for 9,785 lakes.

The ion cluster data all factors untrans.csv dataset contains major ion concentrations (in ion equivalent concentration, ueq/L), the cluster each lake was assigned to, and untransformed natural and human factor data for 1,218 lakes.

Detailed explanations of each variable and data sources can be found in the metadata file and the supplementary Table S1 of the manuscript.

The code.R file contains R codes applied to analyze the data.

Please contact Xinyu Sun (sunxiny9@msu.edu) for any questions and/or further clarification/explanation.
DOI: 10.5281/zenodo.14501710
title: Specific conductance and major ion composition in United States lakes and their natural and human drivers

description: This dataset includes specific conductance and major ion data and their natural and human drivers for lakes across the conterminous US. The data were collected for and analyzed in the paper: 

Sun, X., Cheruvelil, K.S., Hanly, P.J., Webster, K.E., & Soranno, P.A. Natural and human drivers of specific conductance and major ion composition in United States lakes. (Under Review)

The conductivity data all factors untrans.csv dataset contains specific conductance (as a proxy for salinity) and untransformed natural and human factor data for 9,785 lakes.

The ion cluster data all factors untrans.csv dataset contains major ion concentrations (in ion equivalent concentration, ueq/L), the cluster each lake was assigned to, and untransformed natural and human factor data for 1,218 lakes.

Detailed explanations of each variable and data sources can be found in the metadata file and the supplementary Table S1 of the manuscript.

The code.R file contains R codes applied to analyze the data.

Please contact Xinyu Sun (sunxiny9@msu.edu) for any questions and/or further clarification/explanation.
DOI: 10.5281/zenodo.12602594
title: Data and trained model for iPXRDnet

description: This data set is a collection of data sets and model checkpoint in the iPXRDnet.

Model checkpoint file:hMOF-130T: Adsorption prediction model in the hMOF-130T database obtained by traininghmof-300T: Adsorption prediction model in the hMOF-300T database obtained by trainingARC-8:2: Separation selectivity prediction model obtained by trainingGAS_SD-7:3: Self-diffusion coefficients prediction model obtained by trainingMOD-8:2: Bulk modulus and shear modulus prediction model obtained by trainingexAPMOF-1bar-ALM+PXRD: Experimental adsorption isotherm model of Anion-pillared MOFs obtained by training with PXRD and material ligandsexAPMOF-1bar-ALM: Experimental adsorption isotherm model of Anion-pillared MOFs obtained by training with material ligands onlyexAPMOF-1bar-PXRD: Experimental adsorption isotherm model of Anion-pillared MOFs obtained by training with PXRD onlyexAPMOF-ISO :Experimental adsorption isotherm model of Anion-pillared MOFs obtained by training

Data sets file:hmof-xrd+str+ad :PXRD and gas adsorption and structural feature of hmof-300T databasehMOF-130T_ad_list_mof :Gas adsorption data of hmof-130T database hMOF-130T_GAS_DICT :Gas descriptors data of hmof-130T databasehMOF-130T_STR_DICT :Structural feature data of hmof-130T databasehMOF-130T_PXRD_DICT :PXRD data of hmof-130T databasedata_ARCMOF :Separation selectivity data in ARC-MOF databasePXRD_dict_ARCMOF :PXRD data in ARC-MOF databaseMOD_data :Bulk modulus and shear modulus data of Moghadam's MOFsMOD_PXRD_dict : PXRD data of Moghadam's MOFsGAS_SD-data : self-diffusion coefficients data in CoREMOF databasegas_dict : gas descriptors data used in the self-diffusion coefficients databasePXRD_DICT : PXRD data of MOFs in Anion-pillared MOFs' experimental databaseSmiles_ads : Smiles data of gas in Anion-pillared MOFs' experimental databaseall_exAPMOF-1bar : Anion-pillared MOFs' experimental adsorption data under 298K and 1 bar.exAPMOF_DICT : Anion-pillared MOFs' Smiles data of MOFs' ligands and descriptors of metal centers in the experimental databaseall_exAPMOF-iso : Key library of MOF and gas combinations in Anion-pillared MOFs' experimental isotherm database.exAPMOF_ISOdata: Anion-pillared MOFs' experimental adsorption isotherm data under 298K.
DOI: 10.15468/dl.m95u72
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAA7901"
 ]
}

 The dataset includes 52 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029026-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86jpjr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Tolmomyias sulphurescens)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029027-250802193616735/datasets/export for details.
DOI: 10.15468/dl.dm7a7n
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cayman Islands",
 "BasisOfRecord is one of (Occurrence evidence, Human Observation)",
 "HasCoordinate is true",
 "Elevation is greater than or equal to -1000m",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 76 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029028-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16779787
title: Exiobase HYBRID | Green steel version

description: Description

This repository contains all data and code to extend the hybrid-units version of EXIOBASE to account for new innovative steelmaking routes envisaged to be deployed in the EU to meet decarbonization targets for the steel industry. The new model was built by adopting the MARIO open-source framework.   

The database is an improved version of the one described in the following open-access paper (DOI: https://doi.org/10.1088/1748-9326/ad5bf1)

What's new



The new technologies have been characterized for all regions, assuming each inventory to be the same in all regions but differentiated by regional import patterns of each commodity.

A slight aggregation on electricity production activities and commodities have been also performed, to nowcast electricity production mixes to 2024 based on Ember data. Data from Ember have been rearranged to calculate electricity mixes by year and Exiobase regions

The list of steel production technologies have been extended. Full list in the table below


The database implements in the EU the following new activities and commodities:




New activities
New commodities


Manufacturing of steam reformer
Steam reformer


Manufacturing of electrolyser
Electrolyser


Hydrogen production with steam reforming
Steam reforming hydrogen


Hydrogen production with electrolysis
Electrolysis hydrogen


DRI-EAF-NG
 


DRI-EAF-NG-CCS
 


DRI-EAF-COAL
 


DRI-EAF-COAL-CCS
 


DRI-EAF-H2
 


DRI-EAF-BECCS
 


DRI-SAF-BOF-NG
 


DRI-SAF-BOF-H2
 


DRI-SAF-BOF-BECCS
 


SR-BOF
 


SR-BOF-CCS
 


BF-BOF-CCS-73%
 


BF-BOF-CCS-86%
 


BF-BOF-BECCSmax
 


BF-BOF-BECCSmin
 


AEL-EAF
 


MOE
 




 

Extended documentation of database adjustment and extension methodology available among the files in this repository. 

 

Instructions

To use the database, please install MARIO following the instructions. The database can be parsed by using the following command



db = mario.parse_from_txt(

     path='PATH/TO/THE/FOLDER/WHERE/DATA/FROM/THIS/REPOSITORY/ARE/STORED',

     mode='coefficients',

     table='SUT',

)
DOI: 10.5281/zenodo.16779770
title: Assessing Human Disturbance Effects on Carbon Sink Dynamics in Tropical Lowland Rainforest Using Multi-source Remote Sensing: A Case Study of Jianfengling, China
DOI: 10.5281/zenodo.16779771
title: Assessing Human Disturbance Effects on Carbon Sink Dynamics in Tropical Lowland Rainforest Using Multi-source Remote Sensing: A Case Study of Jianfengling, China
DOI: 10.15468/dl.g3t9dc
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aster scaber"
 ]
}

 The dataset includes 29 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029029-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.114709
title: Research data supporting "Self-stabilising water-in-oil droplets through controlled spontaneous emulsification"

description: The dataset contains the underlying data collected for the manuscript "Self-stabilising water-in-oil droplets through controlled spontaneous emulsification". See Readme.txt for full description.
DOI: 10.17863/cam.117186
title: Research data supporting "Colloidal synthesis and etching yield monodisperse plasmonic quasi-spherical Mg nanoparticles"

description: TIFF stacks of scanning electron microscopy (SEM) images of Mg nanoparticles, used for the measurement of nanoparticle sizes. Image acquisition parameters and scale bars are indicated on each image. File names follow the format of Mg_xx_yy_zz.tif, where xx, yy, and zz represent the reaction time in seconds in the first reduction, second reduction, and etching stages, respectively.
DOI: 10.15468/dl.hajkh5
title: Occurrence Download

description: A dataset containing 1546119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Picea glehnii, Picea jezoensis, Picea koraiensis, Picea koyamae, Picea likiangensis, Picea linzhiensis, Picea maximowiczii, Picea meyeri, Picea morrisonicola, Picea neoveitchii, Picea obovata, Picea orientalis, Picea polita, Picea purpurea, Picea retroflexa, Picea schrenkiana, Picea smithiana, Picea spinulosa, Picea torano, Picea wilsonii, Pinus amamiana, Pinus armandii, Pinus bhutanica, Pinus brutia, Pinus bungeana, Pinus cembra, Pinus densata, Pinus densiflora, Pinus densithunbergii, Pinus fenzeliana, Pinus taiwanensis, Pinus gerardiana, Pinus hakkodensis, Pinus halepensis, Pinus henryi, Pinus hwangshanensis, Pinus kesiya, Pinus koraiensis, Pinus latteri, Pinus luchuensis, Pinus massoniana, Pinus morrisonicola, Pinus mugo, Pinus nigra, Pinus parviflora, Pinus pinea, Pinus pumila, Pinus roxburghii, Pinus sibirica, Pinus squamata, Pinus sylvestris, Pinus tabuliformis, Pinus thunbergii, Pinus uncinata, Pinus wallichiana, Pinus wangii, Pinus yunnanensis, Platycladus orientalis, Podocarpus annamiensis, Podocarpus macrophyllus, Podocarpus chingianus, Podocarpus costalis, Podocarpus fasciculus, Podocarpus forrestii, Podocarpus hookeri, Podocarpus nakaii, Podocarpus neriifolius, Podocarpus pilgeri, Podocarpus rumphii, Podocarpus subtropicalis, Pseudolarix amabilis, Pseudotaxus chienii, Pseudotsuga sinensis, Pseudotsuga japonica, Juniperus phoenicea, Sciadopitys verticillata, Taiwania cryptomerioides, Taxus baccata, Taxus calcicola, Taxus chinensis, Taxus contorta, Taxus cuspidata, Taxus florinii, Taxus mairei, Taxus wallichiana, Thuja koraiensis, Thuja standishii, Thuja sutchuenensis, Thujopsis dolabrata, Torreya dapanshanica, Torreya fargesii, Torreya grandis, Torreya jackii, Torreya nucifera, Torreya parvifolia, Tsuga chinensis, Tsuga diversifolia, Tsuga dumosa, Tsuga forrestii, Tsuga sieboldii)",
 "HasCoordinate is true",
 "Year is greater than 1900"
 ]
}

 The dataset includes 1546119 records from 2820 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029016-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29164415
title: Supplementary Material for: The Role of Fermented Product Consumption During Pregnancy and Lactation in the Development of Cow's Milk Allergy in Infants

description: Introduction: This study investigates the potential impact of maternal consumption of fermented products during pregnancy and lactation on the development of cow's milk protein allergy (CMPA) in infants. The introduction highlights how maternal diet can influence immune tolerance and the development of allergic diseases. Although the protective effects of fermented foods on various health conditions are recognized, evidence on their role in preventing allergic diseases remains inconclusive.
Methods: The research was conducted as a case-control study with 95 children aged 0–3 years, comprising 46 CMPA cases and 49 healthy controls. Data were collected through face-to-face interviews with mothers, focusing on demographic information, maternal diet, and environmental factors. Fermented product consumption was measured in grams and milliliters, and allergy diagnoses were confirmed via clinical evaluations, IgE tests, and oral food challenge tests.
Results: Our study analyzed 46 cases and 49 controls. Among cases, 67.4% (n=31) had IgE-mediated CMPA, while 32.6% (n=15) had non-IgE-mediated CMPA. Maternal smoking during pregnancy was reported in 4.3% of cases and 10.2% of controls (p=0.437). Yogurt intake Turing pregnancy was lower in cases (230 g/week) than in controls (420 g/week) (p=0.011), while cheese intake was 210 g/week and 225 g/week, respectively (p=0.042). 
Conclusion: The study concludes that maternal consumption of fermented products during pregnancy may reduce the risk of CMPA in infants. However, larger and long-term studies are needed to clarify the interaction between dietary, cultural, and environmental factors. Further investigation into variables like antacid use, probiotic supplementation, and infection history is also recommended to better understand their influence on CMPA development.