cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24464107.v1
title: Supplementary Data for article '<b>Biochar-plant interactions drive more nonbiochar carbon sequestration in a rice paddy soil</b>' by Liu et al.

description: Soil amendment with biochar is being promoted as a promising strategy for carbon (C) stabilization and accrual, which are key to climate change mitigation. However, it remains elusive on how biochar addition influences nonbiochar C in soils and its mechanisms, especially in the presence of plants. Here we conducted a 365-day soil microcosm experiment with and without adding <sup>13</sup>C-labeled biochar into topsoil to quantify changes in nonbiochar C in the topsoil and subsoil in the presence or absence of rice plants and to determine the mechanisms by which biochar controls nonbiochar C accrual in the soil profile. The nonbiochar C content of topsoil was not affected by biochar addition in the absence of rice plants, but was significantly increased by 4.5% in the presence of rice plants, which could result from increases in the soil macroaggregate fraction, iron (Fe)-bound nonbiochar organic C content, and fungal biomass collectively. However, biochar amendment had no effect on the content of nonbiochar organic C in the subsoil. Overall, biochar-plant interactions drive more nonbiochar C sequestration in the topsoil, and the changes of nonbiochar C in planted soils following biochar addition should be quantified to better assess the soil C sequestration potential in agricultural lands.
DOI: 10.6084/m9.figshare.25135070.v1
title: Data base of Tenebrio responses to microplastic feeding

description: This database illustrates the life history responses of Tenebrio molitor larvae after having a diet composed with microplastics
DOI: 10.6084/m9.figshare.28673348.v1
title: m5-ach-vu

description: This folder has the input files, topology file and pdb file for ACh-VU6007678 bound M5 mAChR mini-G complex
DOI: 10.6084/m9.figshare.28830449.v1
title: Ceiling-Mounted_Mosquito_Nets_Trial_-_Data.xlsx

description: Data of the study entitle <b>Efficacy of Ceiling-Mounted Mosquito Nets for Malaria Vector Control in a Peruvian Amazon Riverine Community: A Stepped-Wedge Cluster Randomized Trial</b>
DOI: 10.6084/m9.figshare.6171005.v1
title: SI2 Adding Research Accounts to the ASSISTments Platform: Helping Researchers Do Randomized Controlled Studies with Thousands of Students

description: ASSISTments is a free, university-based platform. Each day, teachers assign problems to thousands of students (currently 50,000 students) through problem sets aligned to the Common Core State Standards. Randomized controlled experiments are often embedded in these problem sets to evaluate the efficacy of learning interventions. Heffernan has been funded by the NSF to conduct certain types of research using ASSISTments (i.e., spacing studies). Seventeen peer-reviewed publications have resulted from controlled experiments conducted within ASSISTments. <br>
DOI: 10.17632/btptkmr3ky
title: Data of the paper "Volcanogenic Controls on Coupled Fe-S-P Cycling in a Lacustrine Basin: Deciphering Mechanisms of Extreme Organic Carbon Enrichment"

description: Black shales serve as primary archives of organic carbon, preserving critical records of elemental cycling dynamics within carbon sequestration systems. Nevertheless, achieving a comprehensive understanding of biogeochemical cycling processes in lacustrine shale systems remains challenging due to superimposed geological modifications during prolonged burial processes. This investigation employs an integrated stratigraphic-geochemical methodology to elucidate volcanic material-inducedbeij perturbations in Fe-S-P coupling mechanisms and their consequent impacts on organic carbon preservation within Upper Triassic lacustrine shales of the Ordos Basin, North China Platform. Petrographic analysis reveals that organic carbon enrichment demonstrates genetic associations with volcanic inputs, though peak carbon accumulation intervals stratigraphically lag behind tuffaceous depositional events. The volcanic inputs introduced substantial Fe, P, and S into the lacustrine basin. Volcanogenic atmospheric fertilization stimulated proliferation of coccolithophores, lamellibranch, and actinopterygian assemblages within the lacustrine ecosystem, yet sustained nutrient replenishment over million-year timescales proved geochemically untenable. Crucially, volcanic-derived phosphorus became effectively sequestered via iron oxide adsorption and biomineralization processes in sedimentary matrices during this stage. Sulfate influx modulated bacterially mediated redox pathways, enhancing bacterial sulfate reduction (BSR) while suppressing dissimilatory iron reduction (DIR), thereby transitioning the redox regimes to euxinic conditions. During this process, Fe³⁺ in phosphorus-bearing iron (oxides) was reduced to Fe²⁺ and subsequently removed via pyrite formation. Subsequent phosphate remobilization from phosphorus-rich sediments under anoxic bottom water conditions established a positive feedback mechanism that sustained lacustrine productivity over geological timescales, ultimately facilitating exceptional organic matter preservation. This research highlights lacustrine nutrient cycling dynamics as critical amplifiers of carbon burial efficiency following volcanic material perturbations, providing mechanistic insights into continental carbon sink operations and long-term sequestration processes.
DOI: 10.6084/m9.figshare.12543689.v1
title: JVASP-35945 to JVASP-36523

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.16779082.v1
title: Supplementary data for Castillo-Sanchez et al 2021 AJP-Lung

description: Supplementary Data for the paper by J.C. Castillo-Sánchez et al., to be published in Am. J. Physiology - Lung 2021
DOI: 10.6084/m9.figshare.20455950.v4
title: sleep-diary-sleepmeter-infant

description: Annotated daily sleep diary for an infant boy, from 1.5 months to ... <br> The annotations are non exhaustive and not all sleep sessions were recorded, especially in the first 2 weeks. <br> Each file includes the whole history, hence there is no need to concatenate, just pick the latest one.
DOI: 10.6084/m9.figshare.26166427.v4
title: Supplementary material to: 'Changing feeding levels reveal plasticity in elasmobranch life history strategies'

description: Lucas S, Berggren P, Barrowclift E, Smallegange IM. 2024. Changing feeding levels reveal plasticity in elasmobranch life history strategies. <i>Preprint</i>.Life history strategies are shaped by phylogeny, environmental conditions and individual energy budgets, and have implications for conservation biology. We summarised life history traits of 151 elasmobranch species into life history strategies for two contrasting feeding levels in a principal components analysis. Two axes, reproductive output and generation turnover, structure elasmobranch life history strategies, contrasting with results from similar studies. Species’ positions in this life history space were not fixed, but shifted to higher reproductive output when feeding level increased. We also found that both axes predicted population performance, but that population growth rate does not necessarily inform on a species’ demographic resilience. Finally, neither axis predicted IUCN conservation status. Our analyses reveal plasticity in species life history strategies and warn against extrapolating the life history strategy framework from one environment to another when predicting a species’ response to (climate) change, perturbations, and (over)exploitation.<br>
DOI: 10.6084/m9.figshare.28295249.v1
title: VEP predictions and clinical labels for variants.

description: Variant effect predictions from up to 85 variant effect prediction tools, conservation metrics and substitution matrices for 896,930 variants from the ClinVar or gnomAD databases.ClinVar pathogenic and likely pathogenic variants with a rating of 1* or higher are indicated with a label of '1' in the 'label' column.gnomAD variants not present in ClinVar are indicated with a label of '0' on the 'label' column.
DOI: 10.17632/kfkwwgrvpn
title: ElecSus: A program to calculate the electric susceptibility of an atomic ensemble

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present a computer program and underlying model to calculate the electric susceptibility of a gas, which is essential to predict its absorptive and dispersive properties. Our program focuses on alkali-metal vapours where we use a matrix representation of the atomic Hamiltonian in the completely uncoupled basis in order to calculate transition frequencies and strengths. The program calculates various spectra for a weak-probe laser beam in an atomic medium with an applied axial magnetic fiel... Title of program: ElecSus Catalogue Id: AEVD_v1_0 Nature of problem Calculating the weak-probe electric susceptibility of an alkali-metal vapour. The electric susceptibility can be used to calculate spectra such as transmission and Stokes parameters. Measurements of experimental parameters can be made by fitting the theory to data. Versions of this program held in the CPC repository in Mendeley Data AEVD_v1_0; ElecSus; 10.1016/j.cpc.2014.11.023
DOI: 10.6084/m9.figshare.24600255.v1
title: Supporting Information for DO Lifespan Interventions Study

description: In this study, we report the effects of graded levels of CR and IF initiated during adulthood (at 6 months of age) on the health and lifespan of a large cohort of DO mice. We utilized a unique cohort comprising close to 1,000 genetically diverse and genotyped female mice in which we longitudinally profiled 194 traits across 11 categories from the age of 3 months to death.
DOI: 10.6084/m9.figshare.783864.v1
title: Background data for "Which Network Model Should I Use?"

description: Background information, figures and most tables used for:- Evans, T.S. (2014). ‘Which Network Model Should I Use? Towards a Quantitative Comparison of Spatial Network Models in Archaeology’, in T. Brughmans, A. Collar and F. Coward (eds), The Connected Past: challenging networks in archaeology and history. Cambridge: Cambridge University Press, chapter 8. The files contain the figures and most of the tables used in the paper. Background information on the programmes used and on their input data also here e.g. the locations of the 40 test sites used in the paper (shown in figure 5). More details about these files are in the file InformationOnFiles.pdf.
DOI: 10.17632/cnr4nbf8bb
title: CIMF

description: The data includes demographic and clinicopathological features of the patients diagnosed with PTC and underwent total thyroidectomy in our center.
DOI: 10.17632/th5362mzxt
title: ADAQ-SYM: Automated symmetry analysis of defect orbitals

description: Quantum technologies like single photon emitters and qubits can be enabled by point defects in semiconductors, with the NV-center in diamond being the most prominent example. There are many different semiconductors, each potentially hosting interesting defects. The symmetry properties of the point defect orbitals can yield useful information about the behavior of the system, such as the interaction with polarized light. We have developed a tool to perform symmetry analysis of point defect orbitals obtained by plane-wave density functional theory simulations. The software tool, named ADAQ-SYM, calculates the characters for each orbital, finds the irreducible representations, and uses selection rules to find which optical transitions are allowed. The capabilities of ADAQ-SYM are demonstrated on several defects in diamond and 4H-SiC. The symmetry analysis explains the different zero phonon line (ZPL) polarization of the hk and kh divacancies in 4H-SiC.
DOI: 10.17632/tt5ntb4zyv
title: Centrifuge database

description: The Centrifuge database was built by 16s rRNA sequencing of the type strain from the National Center for Biotechnology Information. This database can be used to do taxonomic classification of bacterial groups.
DOI: 10.17632/4xsd8f3ydt
title: Data for: Effect of aroma-producing yeasts in high-salt liquid-state fermentation soy sauce and the mechanism of esters biosynthesis

description: The data in the uploaded file are the relevant quality indicators and flavor data during the soy sauce brewing process, and quantitative analysis data for the study of the biosynthesis pathway of esters. All the data in this manuscript are original data.
DOI: 10.17632/f7vcfjt3j9
title: The original data of bacterial 16S rRNA gene sequencing in the phycosphere of Prorocentrum shikokuense

description: Unraveling the assembly mechanisms and temporal patterns of protist cell-associated and free-living bacterial communities during two Prorocentrum shikokuense blooms.
DOI: 10.17632/gp8r347j38
title: ITC-Net-Blend-60: A Comprehensive Dataset for Robust Network Traffic Classification in Diverse Environments - Scenario C

description: This dataset includes network traffic data from more than 50 Android applications across 5 different scenarios. The applications are consistent in all scenarios, but other factors like location, device, and user vary (see Table 1 of the DetailedDescription document in the Supplementary Materials repository). 
The current repository pertains to Scenario C. Within the repository, for each application, there is a compressed file containing the relevant PCAP files. The PCAP files follow the naming convention: {Application Name}{Scenario ID}{#Trace}_Final.pcap.
DOI: 10.17632/s3mxcbr8ty
title: Demographic profile of digital amnesia

description: It focuses on prevalence of digital amnesia and the difference in it based on certain demographic profiles of students.
DOI: 10.17632/yv257k3fg4
title: Cultural Intelligence Growth in UK, Polish, and Malaysian HE Students: The Role of Satisfaction in a COIL Intervention

description: These datasets were generated as part of a study investigating whether participation in an international, collaborative learning experience—specifically the “Global Classroom Project”—would lead to increases in students’ Cultural Intelligence (CQ) and their satisfaction with the learning experience. The main hypothesis was that students involved in this project would show significant increases in overall CQ and its sub-dimensions (motivational, cognitive, metacognitive, and behavioural), and that higher levels of CQ would be positively associated with greater student satisfaction.

Two datasets are included:

Intervention Group Dataset: This dataset contains matched pre- and post-intervention data from 56 undergraduate psychology students who participated in the Global Classroom Project across three academic years (2021/2022, 2022/2023, and 2023/2024) at three institutions: Opole University (Poland), Leeds Trinity University (UK), and Taylors University (Malaysia). Students worked in intercultural teams and completed an online presentation comparing psychological concepts across the three cultures.

Control Group Dataset: This smaller dataset includes matched pre- and post-data from 6 students in a control group at the UK university who did not participate in the international project.

In both datasets, participants completed two instruments:

Expanded Cultural Intelligence Scale (E-CQS) (Van Dyne et al., 2012), a validated 39-item self-report tool measuring four CQ dimensions on a 7-point Likert scale: motivational, cognitive, metacognitive, and behavioural.

Student Satisfaction Scale, a self-developed 18-item measure assessing satisfaction with the international learning experience (administered only in the intervention group), using a 5-point Likert scale.

Statistical analyses showed that participants in the intervention group experienced significant gains in overall CQ and various sub-dimensions, as well as a positive relationship between CQ and satisfaction. No significant changes were found in the control group, except a small increase in behavioural CQ.

These datasets can be used to explore the development of Cultural Intelligence through international education. The intervention dataset is particularly suited for secondary analyses of trends across cohorts, countries, and CQ dimensions, while the control dataset supports comparison of outcomes for students without intercultural exposure. Both datasets are anonymised, clearly labelled, and formatted for compatibility with common statistical software.
DOI: 10.6084/m9.figshare.21038962.v1
title: A Mars 2020 Perseverance SuperCam Perspective on the Igneous Nature of the Máaz formation at Jezero crater and link with Séítah, Mars

description: Table S1. Super Cam targets and LIBS targets, including member names Table S2. SuperCam LIBS target descriptions, including natural targets, abraded targets, and corehole targets Table S3. Textures of the different Máaz formation targets Table S4. Stoichiometric characteristics for major igneous mineral using SCCT values Table S5. Single minerals detected through LIBS analyses
DOI: 10.6084/m9.figshare.24602748.v1
title: Principal component analysis (PCA)

description: Principal component analysis (PCA) of E. melliodora and E. sideroxylon.SNPs for both populations were called using both reference genomes. Merging all SNPs for the E. melliodora reference, PCA was performed. Similary, PCA was performed using E. sideroxylon as the reference.PCA was performed with PCAngsd (version: 1.10).XXX.samples.lst = corresponding sample names to XXX.pcangsdXXX.species.lst = correcpsonging species labels to XXX.pcangsd
DOI: 10.6084/m9.figshare.27257928.v3
title: <b>Figure 1. UL12.5 does not affect lytic replication in peripheral neurons.</b>

description: Titers of virus [PFU/mL]<br>1A.Viral titers from primary sympathetic neurons (SCGs) quantified at 24 hours post-infection (at an MOI of 10 PFU/cell) KOS-SPA or KOS-UL98.<br>1C.Viral titers from dermal fibroblasts) quantified at 24 hours post-infection (at an MOI of 3 PFU/cell) with KOS-SPA or KOS-UL98.<br><br>qPCR data for;<br>1B. Viral genome (vDNA) copy number, KOS-SPA (WT) or KOS-UL98 (UL12.5 null), 24 hours after infection, primary sympathetic neurons (SCGs).<br>1D. Relative abundance of mtDNA (<i>mtDLoop1</i>) transcripts measured by (RT-) qPCR 12 hours after infection with KOS-SPA or KOS-UL98, primary sympathetic neurons (SCGs).1E. Relative abundance of mtRNA (<i>mtCOX2</i>) transcripts measured by (RT-) qPCR 12 hours after infection with KOS-SPA or KOS-UL98, primary sympathetic neurons (SCGs).<br>1F. Relative <i>Ifnb</i> mRNA expression 24 hours after infection with KOS-SPA or KOS-UL98 of primarysympathetic neurons (SCGs).<br>1G. Relative <i>Ifnb</i> mRNA expression 24 hours after infection with KOS-SPA or KOS-UL98 of primarydermal fibroblasts.<br><br>1H. Representative immunofluorescence images (TIFs) of STING/TGN46 at 3 days post-transduction with either GFP or UL12.5 expressing lentiviral vector. Dataset showing STING and TGN46 (Golgi) area (px<sup>2</sup>) and calculated percentage of STING area overlap with Golgi for each condition. Measurements performed in Fiji.
DOI: 10.6084/m9.figshare.5483680.v1
title: Test_data

description: Test data for prediction
DOI: 10.17632/5yprwjwnx8
title: Data for: Modelling cropping periods of grain crops at the global scale

description: The data correspond to figures in Appendix G: Global maps of computed sowing and harvest dates. The ncdf4 files contain simulated sowing and harvest average dates (day of the year) for the period 1980-1999, for the entire global land grid. Sowing dates are simulated as from Waha et al. (2012). Harvest dates are simulated as from Minoli et al (this publication).
DOI: 10.6084/m9.figshare.20044197.v1
title: Effects of stress relaxation in beta-titanium cantilevers used in orthodontic mechanics

description: ABSTRACT Objective: This study evaluated the force decay and design shape changes caused by stress relaxation in two different orthodontic cantilever configurations. Methods: Eighty cantilevers made of 0.017 x 0.025-in beta-titanium wires were standardized in a passive position, using real scale templates, and randomly divided into two groups (n = 40): Type 1 and Type 2. Each group received a different design (Type 1 with three bends, and Type 2 with two bends), and both were divided in four subgroups (n = 10) according to the evaluation periods: G1 = 24h, G2 = 1 week, G3 = 4 weeks, and G4 = 8 weeks. Mechanical tests were performed immediately after preactivation and at the end of each period, to evaluate force decay. The cantilevers were also scanned and the angles of the bends were measured to assess shape changes. Results: Cantilever forces decayed over time. Type 1 - G1 showed less force decay than Type 2 (10.83 cN vs 17.87 cN). Type 1 cantilevers showed significant force decay only when G4 was compared to G1 (9.05 cN), G2 (11.73 cN), and G3 (9.78 cN). Type 2 cantilevers presented differences when G1 was compared to G2 (9.57 cN) and G3 (7.89 cN). Regarding to the cantilever angle closest to the bracket insertion, Type 1 cantilevers showed significant decrease for G2 (1.58°) and G4 (1.52°). Conclusions: Cantilevers’ design and proximity of the bends influenced force decay pattern overtime. Type 1 cantilevers presented more stable design at the first weeks than Type 2.
DOI: 10.6084/m9.figshare.25547149.v2
title: Data and codes from "Neurogenomic and behavioral principles shape freezing dynamics and synergistic performance in <i>Drosophila</i> <i>melanogaster</i>"

description: Behavioral, genomic, and simulation datasets of diverse strains of <i>Drosophila melanogaster</i>, accompanied with codes to replicate findings described in the manuscript "<b>Neurogenomic and behavioral principles shape freezing dynamics and synergistic performance in</b><b> </b><b><i>Drosophila melanogaster</i></b>" written by Sato and Takahashi (2025).
DOI: 10.6084/m9.figshare.27924966.v2
title: Raw Data. Antifungal activity of newly formed polymethylmethacrylate (PMMA)modification by zinc oxide and zinc oxide- silver hybrid nanoparticles

description: The file contains data used to characterize nanoparticles, and raw microbioogical data obtained from the study of the antibiofilm activity of ZnO-Ag nanoparticles and PMMA- NPs nanocomposites.
DOI: 10.6084/m9.figshare.28225106.v1
title: Table of differential gene expression between cell types of <i>Salpingoeca rosetta</i>.

description: Pairwise comparisons of gene expression between cell types, measured by RNA sequencing and quantified as transcripts per million (TPM) using kallisto and sleuth. Each gene’s expression is presented as individual triplicate values, along with the mean and standard deviation. Comparisons are made between any two cell types and shown as fold change, standard error, and associated P-value and q-value. Each gene is also annotated with accession IDs for uniprot, pfam, interpro, orthoDB, unipathway, and gene ontology (GO).
DOI: 10.25403/upresearchdata.24454258.v1
title: Evaluating the moderating and mediating effect of psychological ownership on the relationship between innovative work behaviour and person-environment fit within the South African context

description: The aim of this study was to examine the relationship between person-environment fit, innovative work behaviour, and psychological ownership. Furthermore, the study intended to explore the role that psychological ownership could play either as a mediator or a moderator in the person-environment fit and innovative work behaviour relationship. This study was conducted using a cross-sectional survey-based research design. A convenience sample was obtained consisting of 492 participants employed in both the public and private sectors. Data was analysed using SPSS Statistics 28 and Mplus Version 8.7 statistical software which included confirmatory factor analysis, descriptive statistics, correlations, and mediation analysis.
DOI: 10.6084/m9.figshare.22815186.v1
title: Additional file 5 of Identification of potential diagnostic biomarkers of atherosclerosis based on bioinformatics strategy

description: Additional file 5. Supplementary Table S4: The GO functional enrichment analysis results of 155 robust DEGs.
DOI: 10.6084/m9.figshare.27200997.v3
title: Dataset.zip

description: 1234