cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p1xvkxrl
title: LANDFIRE 2024 Update

description: The LANDFIRE 2024 Update (LF 2024)
This product suite maintains LANDFIRE's ongoing goal to release annual updates every year that are current to the previous year. This means LF 2024 accounts for disturbances up through Fiscal Year 2024 and is being released in 2025. The releases are intended to provide critical, up-to-date information ahead of the fire season for areas of the United States prone to large devastating wildfires. LF 2024 begins with the Alaska release in the spring, followed by the Southwest (SW) and Northwest (NW) GeoAreas of the Conterminous United States (CONUS) in the summer, and wraps up with the release of full CONUS extent and Hawaii and Puerto Rico and the US Virgin Islands in the fall.

In LF 2024 disturbance products continue to leverage agency-submitted data and analyst verification of multiple satellite change detection techniques. The vegetation products are updated using rulesets similar to LF 2020 Update (LF 2020) and LF 2022 Update (LF 2022) but only for 2024 disturbances since prior disturbances were brought current using machine learning and 2023 satellite imagery during the LF 2023 Update (LF 2023). The fuels products are updated for 10 years of disturbance using rulesets similar to LF 2020, LF 2022, and LF 2023. In addition, vegetation and fuels products include updates in both burnable and non-burnable agricultural lands.
 

Improvements Featured in the LF 2024 Update
The Annual Disturbance attribute table (legend) has been re-worked to modernize it and make improvements. The crosswalk between past and current disturbance years can be downloaded here (automatically downloads .xlsx). This impacts all 3 Annual Disturbance products that LANDFIRE delivers throughout the year: Limited, Preliminary, and Final. To learn more, read Reconstructing the Annual Disturbance Legend: A Record of Change.
Alaska Preliminary and Final Annual Disturbance products will now use imagery to estimate severity (High, Moderate, Low, and No severity) similar to CONUS. Severity assignments from fire programs such as MTBS, RAVG, and BARC will continue to be used and prioritized.
DOI: 10.5061/dryad.5db0168
title: Data from: Benefits of extra food to reproduction depend on maternal condition

description: The amount of food resources available to upper-level consumers can show
 marked variations in time and space, potentially resulting in food
 limitation. The availability of food resources during reproduction is a
 key factor modulating variation in reproductive success and life-history
 trade-offs, including patterns of resource allocation to reproduction vs.
 self-maintenance, ultimately impacting on population dynamics. Food
 provisioning experiments constitute a popular approach to assess the
 importance of food limitation for vertebrate reproduction. In this study
 of a mesopredatory avian species, the lesser kestrel (Falco naumanni), we
 provided extra food to breeding individuals from egg laying to early
 nestling rearing. Extra food did not significantly affect adult body
 condition or oxidative status. However, it increased the allocation of
 resources to flight feathers moult and induced females to lay heavier
 eggs. Concomitantly, it alleviated the costs of laying heavier eggs for
 females in poor body condition, and reduced their chances of nest
 desertion (implying complete reproductive failure). Extra food
 provisioning improved early nestling growth (body mass and feather
 development). Moreover, extra food significantly reduced the negative
 effects of ectoparasites on nestling body mass, while fostering forearm (a
 flight apparatus trait) growth among highly parasitized nestlings. Our
 results indicate that lesser kestrels invested the extra food mainly to
 improve current reproduction, suggesting that population growth in this
 species can be limited by food availability during the breeding season. In
 addition, extra food provisioning reduced the costs of the moult-breeding
 overlap and affected early growth trade-offs by mitigating detrimental
 ectoparasite effects on growth and enhancing development of the flight
 apparatus with high levels of parasitism. Importantly, our findings
 suggest that maternal condition is a major trait modulating the benefits
 of extra food to reproduction, whereby such benefits mostly accrue to
 low-quality females with poor body condition.
description: Breeding adult
 dataThis file includes the
 data collected on adult birds that were included in the study. The
 statistical analysis of these data is reported in Table 2 of the published
 article.adult_data.csvEgg and clutch dataThis file includes the data collected on egg and clutch characteristics that were included in the study. The statistical analysis of these data is reported in Table 3 and Table 4 of the published article.egg_clutch_data.csvNestling dataThis file includes the data collected on nestlings that were included in the study. The statistical analysis of these data is reported in Table 4 and Table 5 of the published article.nestling_data.csv
DOI: 10.5061/dryad.g67n2n1
title: Data from: Plant host identity and soil macronutrients explain little variation in sapling endophyte community composition: is disturbance an alternative explanation?

description: 1. Bacterial endophytes may be fairly host specific; nonetheless, an
 important subset of taxa may be shared among numerous host species forming
 a community-wide core microbiome. Moreover, other key factors,
 particularly the supply of limiting macronutrients and disturbances, may
 supersede the importance of host identity. 2. We tested the following four
 non-mutually exclusive hypotheses: 1. The Host Identity Hypothesis:
 endophytes vary substantially among different host plant species. 2. The
 Core Microbiome Hypothesis: a subset of microbial taxa will be shared
 among all host plant species. 3. The Soil Resource Supply Hypothesis:
 endophytes vary substantially among habitats with experimentally elevated
 levels of macronutrients. 4. The Disturbance-Disruption Hypothesis:
 disturbances created by the periodic application of antibiotics structure
 bacterial endophyte communities. 3. We tested these hypotheses by
 characterizing endophytes using high-throughput sequencing among seedlings
 of five phylogenetically diverse tree species nested within a long-term,
 full factorial nitrogen, phosphorus, and potassium soil fertilization
 experiment. We artificially disturbed one of our focal species by applying
 antibiotics every 10-14 days for 29 months within the soil (N,P,K)
 fertilization experiment. 4. While we detected a significant effect of
 host identity and soil nutrient additions, together they explained little
 variation in endophyte community composition (&lt; 10%). We found
 unequivocal evidence for a core microbiome shared by all species.
 Specifically, we found nine OTUs were present among 95% or more of all
 control saplings, representing a third of the total reads. These bacterial
 taxa belonged to the Actinobacteria. 5. In contrast, disturbance
 (antibiotics) explained more endophyte variation than all nutrient
 addition combinations combined and twice the variation explained by host
 identity for all five tree species. Synthesis: Our results challenge the
 idea that host identity is a primary filter shaping bacterial endophyte
 communities; this suggests that many of the same bacterial taxa occur
 inside plant hosts even if those host plants are phylogenetically diverse.
 Moreover, we documented a distinct core microbiome shared among our five
 focal tree species. Finally, we found that disturbance was an important
 driver of microbial community composition, which parallels the importance
 of disturbance in other areas of community ecology.
description: sampleInfo_with_rich_diversitySample metadata. Includes treatment information & richness and diversity estimatesTaxonomyVsOTUKeyTaxonomic hypotheses for each OTUOTUtable_unrarifiedUnrarified otu table.SequencesTrimmed sequences output from Qiimetrimmed_seqs.tar.gz
DOI: 10.5061/dryad.m99r286
title: Data from: Human gaze tracks attentional focusing in memorised visual space

description: Brain areas that control gaze are also recruited for covert shifts of
 spatial attention (1-9). In the external space of perception, there is a
 natural, ecological link between the control of gaze and of spatial
 attention, since information sampled at covertly attended locations can
 inform where to look next (2,10,11). Attention can also be directed
 internally to representations held within the spatial layout of visual
 working memory (12-16). In such cases, the incentive for using attention
 to direct gaze disappears since there are no external targets to scan.
 Here we investigate whether the brain’s oculomotor system also
 participates in attention within the internal space of memory.
 Paradoxically, we reveal this participation through gaze behaviour itself.
 We demonstrate that selecting an item from visual working memory biases
 gaze in the direction of the memorised location of that item – despite
 there being nothing to look at and even though location memory was never
 explicitly probed. This retrospective ‘gaze bias’ occurs only when an item
 is not already in the internal focus of attention, and predicts the
 performance benefit associated with the focusing of internal attention. We
 conclude that the oculomotor system also participates in the focusing of
 attention within memorised space, leaving traces all the way to the eyes.
description: READMEexp1_sess1_logexp1_sess2_logexp2_logexp3_logexp4_logexp1_sess1_eyeexp1_sess2_eyeexp2_eyeexp3_eyeexp4_eye_s01-10exp4_eye_s11-20
DOI: 10.5061/dryad.jb4645r
title: Data from: A prospective cohort study examining cervical cancer screening methods in HIV-positive and HIV-negative Cambodian women: a comparison of human papilloma virus testing, visualization with acetic acid, and digital colposcopy

description: Objectives: Logistical and economic issues make traditional cytology-based
 cervical cancer screening challenging in developing countries.
 Alternative, cost-effective, screening strategies must be developed to
 screen millions of women in resource poor countries such as Cambodia.
 Design: A prospective cohort study during which all women underwent four
 cervical cancer screening methods: 1) self-sampled human papilloma virus
 (HPV) testing (careHPVTM system) 2) clinician-collected HPV testing 3)
 visualization with acetic acid (VIA) 4) digital colposcopy (DC) with the
 Enhanced Visual Assessment System (EVA). Setting: A referral hospital in
 Phnom Penh, Cambodia. Participants: 250 Cambodian women (129 HIV+, 121
 HIV-). Subjects were recruited from the National Center for HIV/AIDS
 Dermatology and sexually transmitted disease (STD) cohort, the Sihanouk
 Hospital Center of Hope’s Rural Outreach Teams, and the Pochentong Medical
 Center. Results: 56 of the 250 (22·4%) patients tested positive for
 high-risk HPV (hrHPV+). 37/129 HIV+ women were hrHPV+ (28·6%) whereas
 19/121 HIV- women were hrHPV+ (15·7%) p=0·0154. Self-sampling HPV
 specimens identified 50/56 (89%) whereas physician collected specimens
 identified 45/56 (80%) p=0·174. 95·2% of the patients felt comfortable
 obtaining HPV self-samples. 37 of 250 women were VIA+. 30 of 37 VIA+ women
 underwent confirmatory biopsies for cervical intraepithelial neoplasia
 (CIN) (26 CIN1, 4 CIN2+). The rate of confirmed dysplasia in the HIV+
 group was 20/129 (15·5%) compared to 10/121 (8·26%) in HIV- women
 p=0·0291. The contemporaneous physician impressions of the digital
 colposcopic images accurately differentiated between CIN1 and CIN2+
 lesions in all 30 women having confirmatory biopsies. Conclusions: The
 results of this study suggest potential modifications of the current
 cervical screening strategy that is currently being employed in Cambodia.
 The first step in this new strategy would be self-swabbing for hrHPV.
 Subsequently, hrHPV+ patients would have digital colposcopy and immediate
 treatment based on colposcopic findings; cryotherapy for suspected CIN1,
 and loop electrosurgical excision procedure (LEEP) for suspected CIN2+.
 Funding: The Gynecologic Cancers Research Foundation, a 501(c)3 corp.
description: HPV study
 reportsData of HPV test results
 and cervical dysplasiaHPV study report in
 2017_NARA.xlsx
DOI: 10.5061/dryad.jp43fg6
title: Data from: Invasive species and postglacial colonization: their effects on the genetic diversity of a Patagonian fish

description: The present distribution of Patagonian species is the result of a complex
 history involving Quaternary refugial populations, Holocene range
 expansions, and demographic changes occurring during the Anthropocene.
 Invasive salmonids were introduced in Patagonia during the last century,
 occupying most rivers and lakes, preying on, and competing with native
 species, including the fish Galaxias platei. Here we used G. platei as a
 case study to understand how long-term (i.e. population differentiation
 during the Holocene) and short-term historical processes (salmonid
 introductions) affect genetic diversity. Using a suite of microsatellite
 markers, we found that the number of alleles is negatively correlated with
 presence of salmonids (short-term processes), with G. platei populations
 from lakes with salmonids exhibiting significantly lower genetic diversity
 than populations from lakes without salmonids. Simulations (100 years
 backwards) showed that this difference in genetic diversity can be
 explained by a 99% reduction in population size. Allelic richness and
 observed heterozygosities were also negatively correlated with the
 presence of salmonids, but also positively correlated with long-term
 processes linked to Quaternary glaciations. Our results show how different
 genetic parameters can help identify processes taking place at different
 scales and their importance in terms of conservation.
description: Genepop 8
 microsatelliteGenepop files for 21
 Galaxias platei populations with 8 microsatellite markers and 16 Galaxias
 platei populations with 10 microsatellite markers.Genepopfiles.rar
DOI: 10.5061/dryad.bt3m1p2
title: Data from: Adaptive differences in circadian clock gene expression patterns and photoperiodic diapause induction in Nasonia vitripennis

description: Day length (photoperiod) and temperature oscillate daily and seasonally
 and are important cues for season-dependent behaviour. Larval diapause of
 the parasitoid Nasonia vitripennis is maternally induced following a
 certain number of days (switch point) of a given critical photoperiod
 (CPP). Both the switch point and CPP follow a latitudinal cline in
 European N. vitripennis populations,. We previously showed that allelic
 frequencies of the clock gene period correlate with this diapause
 induction cline. Here, we report that circadian expression of four clock
 genes, period (per), cryptochrome-2 (cry-2), clock (clk) and cycle (cyc),
 oscillates as a function of photoperiod and latitude of origin in wasps
 from populations from the extremes of the cline. Expression amplitudes are
 lower in northern wasps, indicating a weaker, more plastic, clock.
 Northern wasps also have a later onset of activity and longer free running
 rhythms in constant conditions. Per RNAi caused speeding up of the
 circadian clock, changed the expression of other clock genes and delayed
 diapause in both southern and northern wasps. These results point towards
 adaptive latitudinal clock-gene expression differences and to a key role
 of per in the timing of photoperiodic diapause induction of N.
 vitripennis.
description: qPCR expression data and
 Locomotor activity dataExpression data for each
 analysed gene are located in the qPCR folder (raw and
 processed).Behavioural data (raw and processed) are in the RNAi data
 folder. Each folder contains a readme file.Dalla-Benetta-et-al-2019.zip
DOI: 10.5061/dryad.7g227bm
title: Data from: Consistent associations between body size and hidden contrasting color signals across a range of insect taxa

description: While there have been a number of recent advances in our understanding of
 the evolution of animal color patterns, much of this work has focused on
 color patterns that are constantly displayed. However, some animals hide
 functional color signals and only display them transiently through
 behavioral displays. These displays are widely employed as a secondary
 defense following detection when fleeing (flash display) or when
 stationary (deimatic display). Yet if displays of hidden colors are so
 effective in deterring predation, why have not all species evolved them?
 An earlier study suggested that the hidden anti-predatory color signals in
 insects are more likely to have evolved in species with large size because
 either (or both): i) large cryptic prey are more frequently detected and
 pursued and ii) hidden color signals in large prey are more effective in
 deterring predation than small prey. These arguments should apply
 universally to any prey that use hidden signals so the association between
 large size and hidden contrasting color signals should be evident across
 diverse groups of prey. In this study, we tested this prediction in five
 different groups of insects. Using phylogenetically controlled analysis to
 elucidate the relationship between body size and color contrast between
 forewings and hindwings, we found evidence for the predicted size-color
 contrast associations in four different groups of insects, namely
 Orthoptera, Phasmatidae, Mantidae, Saturniidae, but not in Sphingidae.
 Collectively, our study indicates that body size plays an important role
 in explaining variation in the evolution of hidden contrasting color
 signals in insects.
description: Data used for the
 analysisThis excel file contains
 size and color category of each species in 5 different insect groups
 (Orthoptera, Mantidae, Phasmatidae, Saturniidae, and
 Sphingidae).AmNatData.xlsx
DOI: 10.5061/dryad.9g53dj2
title: Data from: Social genes are selection hotspots in kin groups of a soil microbe

description: The composition of cooperative systems, including animal societies,
 organismal bodies, and microbial groups, reflects their past and shapes
 their future evolution. However, genomic diversity within many multiunit
 systems remains uncharacterized, limiting our ability to understand and
 compare their evolutionary character. We have analyzed genomic and
 social-phenotype variation among 120 natural isolates of the cooperative
 bacterium Myxococcus xanthus derived from six multicellular fruiting
 bodies. Each fruiting body was composed of multiple lineages radiating
 from a unique recent ancestor. Genomic evolution was concentrated in
 selection hotspots associated with evolutionary change in social
 phenotypes. Synonymous mutations indicated that kin lineages within the
 same fruiting body often first diverged from a common ancestor more than
 100 generations ago. Thus, selection appears to promote endemic
 diversification of kin lineages that remain together over long histories
 of local interaction, thereby potentiating social coevolution.
description: Raw data and analyses
 for paper: Wielgoss et al. (2019) ScienceData file contains the
 following main folders, naming indicates which item (Table, Figure, or
 main text) is referred to: ./SCIENCE_WIELGOSS_FIG1_NETWORKS
 ./SCIENCE_WIELGOSS_FIGS10_S11_PHENO-CONSTRUCTS
 ./SCIENCE_WIELGOSS_FIGS2_PHLOGENY ./SCIENCE_WIELGOSS_FIGS3_NETWORKS
 ./SCIENCE_WIELGOSS_FIGS6_S7_PHENO-NAT-ISOL
 ./SCIENCE_WIELGOSS_FIGS8_S9_PHENO-CONTROL
 ./SCIENCE_WIELGOSS_MAIN-TEXT-STATS ./SCIENCE_WIELGOSS_TABLE_S13_MUT-CALL
 ./SCIENCE_WIELGOSS_TABLE_S1_MUT-CALLSCIENCE_WIELGOSS
 2.zip
DOI: 10.5061/dryad.48hg077
title: Data from: Quantification of the activity of detoxifying enzymes in terrestrial invertebrates: optimization, evaluation and use of in vitro and ex vivo methods

description: 1. The negative effects of pesticides on beneficial terrestrial
 invertebrates have received much attention, and in this context
 quantification of the activity of metabolic enzymes provides an important
 tool. Unfortunately, current methodologies are limited in their use. 2. In
 this study, the grain beetle, Tenebrio molitor was used to illustrate why
 in vitro methods are ineffective to quantify metabolic enzymes in some
 insects. It was further used to optimize an ex vivo assay that can replace
 in vitro methods when these are ineffective. The ex vivo method can
 quantify metabolic enzymatic activities of cytochrome P450 mixed function
 oxidases (CYPs), general esterases (EST) and glutathione S-transferases
 (GST). 3. In detail we show, that T. molitor produces inhibitory and/or
 degrading agents, which are released during tissue homogenization. As
 these agents inhibit the in vitro CYP activity of rat liver microsomes
 (RLM) we suggest, that they are also responsible for the lack of in vitro
 CYP activity of T. molitor. We tested the effectiveness of broad-spectrum
 protease inhibitors as protective agents and found, that they were only
 effective in concentrations that also interfered directly with the
 activity of CYP enzymes. As an alternative to in vitro measurements, we
 optimized an ex vivo method for quantification of CYP, EST and GST on
 individual gut systems of T. molitor. Our ex vivo method advances previous
 ex vivo methods, by allowing quantification of three major enzyme
 families, all in a single individual, and by exploiting real-time kinetic
 measurements of the enzymatically produced product. 4. Subsequently, our
 method was successfully tested for its use on three different life stages:
 larvae, pupae and adult insects from T. molitor and Apis mellifera. The
 method shows promise for expansion to other species and potentially other
 enzyme families and/or substrates.
description: Figure01Data used for Figure 1 in manuscriptFigure02Data used for Figure 2 in manuscriptFigure03Data used for Figure 3 in manuscriptFigure04Data used for Figure 4 in manuscriptFigure05Data used for Figure 5 in manuscriptTable01Data used for Table 1 in manuscript
DOI: 10.5061/dryad.r8576v7
title: Data from: Male vocalizations convey information on kinship and inbreeding in a Lekking bird

description: Kinship and inbreeding are two major components involved in sexual
 selection and mating system evolution. However, the mechanisms underlying
 recognition and discrimination of genetically related or inbred
 individuals remain unclear. We investigated whether kinship and inbreeding
 information is related to low frequency vocalizations, “booms”, produced
 by males during their courtship in the lekking houbara bustard
 (Chlamydotis undulata undulata). Based on a captive breeding programme
 where the pedigree of all males is known, we investigated the similarity
 of booms’ acoustic parameters among captive males more or less
 individually inbred and therefore genetically related with each other. In
 the wild, we investigated the relationship between the spatial
 distribution of males within leks and the similarity of acoustic
 parameters of their booms. In the captive population, we found (1) a
 relationship between the individual inbreeding level of captive males and
 their vocalization parameters; (2) that kin share similar frequency and
 temporal characteristics of their vocalizations. In the wild, we found no
 evidence for spatial structuring of males based on their acoustic
 parameters, in agreement with previous genetic findings on the absence of
 kin association within houbara bustard leks. Overall, our results indicate
 that genetic information potentially related to both the identity and
 quality of males is contained in their vocalisations.
description: Cornec et al_Genetic
 information in houbara vocalisations_Data