cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22786229.v1
title: A mixed methods approach for measuring topic sensitivity in conservation

description: 1. Conservationists increasingly aim to understand human behaviour to inform intervention design. However, obtaining information from people about their behaviour can be challenging, particularly if the research topic is considered sensitive. Topic sensitivity may raise methodological, ethical, political and legal concerns which, if poorly addressed, can have significant impacts on research participants, the research process, data quality and the success of conservation outcomes that are informed by research findings. While considerable effort has been invested in developing techniques for reducing bias when collecting data on sensitive topics, less attention has been focused on identifying if, and why, a topic is sensitive. <br> 2. We use a mixed methods approach to explore how willing people are to discuss topics that could be considered sensitive (e.g., illegal wildlife hunting). Collecting data from people living near protected areas in Indonesia (n=362) and Tanzania (n=345), we developed and tested a psychometric scale to measure topic sensitivity at the respondent level and conducted group exercises (free-listing and pile sorts) to gain a deeper understanding of peoples’ willingness to discuss different topics. <br> 3. The perceived sensitivity of topics varied both within and between the two focal contexts, with more topics being perceived as sensitive in Tanzania than Indonesia. Participants’ knowledge of rules, and their experiences of living alongside protected areas affected how sensitive they considered topics to be. <br> 4. Mixed methods approaches can provide holistic and nuanced understanding of topic sensitivity. However, recognising that in-depth studies are not always feasible to implement, we demonstrate that methods, such as our Sensitivity Index, can easily be adapted for different contexts and deployed to rapidly obtain valuable insights on topic sensitivity, to help inform conservation research and practice. <br> Here we include an anonymised dataset for the Sensitivity Index, along with the translated survey instruments used in Indonesia and Tanzania. These are presented as XLS forms, which can be uploaded into ODK or KoBoToolbox and then administered online or via mobile devices.
DOI: 10.6084/m9.figshare.23674620.v1
title: Data from "The effect of pioneer<b> </b>carrion beetles on the emission of volatile organic compounds and carrion insect community assembly"

description: Raw data and R script for Statistical analyses in the paper "The effect of pioneer carrion beetles on the emission of volatile organic compounds and carrion insect community assembly" by Ito et al. (2023) Ecology and Evolution.
DOI: 10.6084/m9.figshare.16527381.v1
title: CRISPR read count files

description: Raw read counts for all CRISPR screens
DOI: 10.6084/m9.figshare.14844045.v1
title: Supplementary Material for: Adherence to Guideline-Oriented Preventive Measures in Patients with Atopic Dermatitis in Germany

description: <b><i>Background:</i></b> Atopic dermatitis (AD) is a chronic inflammatory skin disease that is often associated with comorbidities and quality of life losses. The implementation of evidence-based preventive measures strengthens patient participation and offers the potential to improve quality of care for AD. <b><i>Objectives:</i></b> To assess adherence to guideline-oriented preventive measures in adult patients with AD in dermatological routine care in Germany. <b><i>Methods:</i></b> The self-responsible application of preventive measures, clinical features, pruritus, disease severity, and duration of disease as well as skin disease-related quality of life were assessed in two independent cross-sectional studies in 2010 and 2017–2019. <b><i>Results:</i></b> Between 2017 and 2019, 706 patients (55.8% female, mean age 41 years) were recruited in a comparable way to the survey in 2010 with 1,678 patients (60.5% female, mean age 38 years). Regular skin care was applied by 99.5% (2010: 94.9%), 90.9% avoided skin irritants (2010: 84.6%), and 80.2% (2010: 61.6%) did not smoke at home. Relaxation techniques were applied by 44.4% (2010: 29.9%). Advice on self-help measures was taken by 36.4% (2010: 27.1%) and 29.2% (2010: 15.4%) attended AD patient education courses. All six preventive measures categorized as obligatory were performed by 13.9% of the patients (2010: 6.7%). Predictors for the number of obligatory preventive measures applied were a high level of education, a longer disease duration, and a lower quality of life. <b><i>Conclusions:</i></b> Although the self-reported use of evidence-based preventive measures in the 2017–2019 study appears to be more frequent than in 2010, important measures are still insufficiently established. Hence, more implementation, including education, is needed to increase the use of guideline-oriented preventive measures.
DOI: 10.6084/m9.figshare.15103128.v1
title: GANmapper Data and Code

description: We included the results in our paper and also selected datasets and model checkpoints for reproducibility.
DOI: 10.6084/m9.figshare.706329.v2
title: Inferring global protein activity profiles by network based analysis of gene expression signatures

description: This file contains all the normalized datasets and R-scripts used in the "Inferring global protein activity profiles<br>by network based analysis of gene expression signatures" manuscript by Mariano J. Alvarez, Yao Shen, B. Belinda Ding, B. Hilda Ye and Andrea Califano.
DOI: 10.6084/m9.figshare.20208899.v1
title: Parameter Dependencies of Early-Stage Tangential Discontinuity-Driven Foreshock Bubbles in Local Hybrid SimulationsUntitled Item

description: This dataset is the result of local hybrid simulation runs of a foreshock bubble with different initial distributions for the injected foreshock ions. The dataset includes the magnetic field components, ion densities, bulk flow components, temperatures, electric fields, and currents. Run 365 is with a foreshock ion distribution with a very small ring speed (2VA) for the foreshock ions, and Run 366 is with a foreshock ion distribution with a relatively larger ring speed (10VA) for the foreshock ions. The data is saved as Fortran Unformatted Binary files. For questions regarding the data, please contact atvu@alaska.edu.
DOI: 10.6084/m9.figshare.25340668.v3
title: Conversion Pressure Index

description: We developed a 1-km resolution, global map of land conversion pressure from multiple drivers, referred to as the conversion pressure index (CPI). The CPI combines past rates of anthropogenic change, as measured by temporal human modification maps, with suitability maps for potential future expansion by large-scale development. The CPI thus offers a new way to measure a cumulative gradient of anthropogenic pressure as opposed to categorical land cover change.
DOI: 10.6084/m9.figshare.25606128.v1
title: Supplementary Material for: Global growth phase response of the gut bacterium Phocaeicola vulgatus (phylum Bacteroidota)

description: Phocaeicola vulgatus belongs to the intestinal microbiome, where it fermentatively breaks down of food-derived biopolymers , thereby, contributing to the gut metabolome. Moreover, due to its product range, P. vulgatus is a potential nonstandard platform organism for sustainable production of basic organic chemicals. Complementing a recent physiologic-proteomic report deciphering the strain's versatile fermentation network [1], the present study focuses on the global growth phase-dependent response.

P. vulgatus was anaerobically cultivated with glucose in process-controlled bioreactors. Close sampling was conducted to measure growth parameters (OD, CDW, ATP content, substrate/product profiles) to determine growth stoichiometry. A coarser sampling (½ODmax, ODmax, and ODstat) served the molecular analysis of the global growth phase-dependent response, applying proteomics (soluble and membrane fractions, nanoLC-ESI-MS/MS) and targeted/untargeted metabolome analyses.

The determined growth performance of features 1.74 h doubling time, 0.06 gCDW/mmolGlc biomass yield, 0.36 (succinate) and 0.61 (acetate) mmolP/mmolGlc as predominant fermentation product yields, and 0.43 mmolATP/mmolC as theoretically calculated ATP yield. The fermentation pathway displayed growth phase-dependent dynamics: the levels of proteins and their accompanying metabolites constituting the upper part of glycolysis peaked at ½ODmax, whereas those of the lower part of glycolysis and of the fermentation routes in particular towards predominant acetate and succinate were highest at ODmax and ODstat. While identified proteins of monomer biosynthesis displayed rather unspecific profiles, most of the intracellular amino acids peaked at ODmax. By contrast, proteins and metabolites related to stress response and quorum sensing showed increased abundances at ODmax and ODstat. The composition of the exometabolome expanded from 2,317 molecular formulas at ½ODmax via 4,258 at ODmax to 4,501 at ODstat, with growth phase-specific subsets increasing in parallel. 

The present study provides insights into the distinct growth phase-dependent behavior of P. vulgatus during cultivation in bioreactors. This could serve as a valuable knowledge base for further developing P. vulgatus as a non-conventional platform organism for biotechnological applications. In addition, the findings shed new light on the potential growth phase-dependent imprints of P. vulgatus on the gut microbiome environment, e.g. by indicating interactions via quorum sensing and by unraveling the complex exometabolic background against which fermentation products and secondary metabolites are formed.
DOI: 10.6084/m9.figshare.28463501.v1
title: <b>Relative deprivation</b>

description: 调查相对剥夺对公众对环境保护支持的影响。
DOI: 10.6084/m9.figshare.25772802.v1
title: Does windbreak enhancement with floral resources increase pollinator communities in citrus orchards?

description: 1. Agricultural practices and landscape simplification contribute to the ongoing global decline in wildlife. A more integrated approach such as cultivating flowers by agricultural fields can enhance wildlife habitat, especially for beneficial arthropods like pollinators.2. In Florida, citrus orchards are commonly bordered by living windbreaks, single lines of trees designed to buffer orchards from weather extremes as well as pest and pathogen movement. Although these windbreaks act as alternative habitats for residential arthropods, they can be improved with additional floral resources and vegetational complexity.3. In this study, we explored whether enhancing these field margins by planting flowering herbs, vines, and shrubs would lead to higher pollinator abundance and diversity in citrus orchards in north and central Florida. We also investigated the role of naturally occurring wildflowers in attracting pollinators.4. We found that floral plantings by citrus orchard edges were utilized by pollinators. Cultivated blanketflower (<i>Gaillardia pulchella</i>) was particularly attractive to various wild bees, while commercially managed honey bees were primarily found on a common weedy flower, Spanish needles (<i>Bidens alba</i>). We ultimately found differing patterns of pollinator activity in the adjacent citrus orchards across regions; while more bees, including honey bees, were found within the treatment orchard in central Florida, this was not true in north Florida.5. This study highlights the pollinator resources provided by wild flowers in and around orchards in addition to the conservation potential of cultivated, pollinator-friendly plants.
DOI: 10.6084/m9.figshare.6754097.v1
title: Code for Cheplygina et al - Dissimilarity-based ensembles for multiple instance learning, TNNLS 2016

description: This code is used in the papers:<br>Cheplygina, V., Tax, D. M., & Loog, M. (2016). Dissimilarity-based ensembles for multiple instance learning. IEEE transactions on neural networks and learning systems, 27(6), 1379-1391.<br> and<br>Cheplygina, V., Tax, D. M. J., & Loog, M. (2013). Combining instance information to classify bags. In International Workshop on Multiple Classifier Systems (pp. 13-24).<br>
DOI: 10.48361/gklk1u
title: CS-PHOC: weekly census counts of Southern Ocean phocids at Cape Shirreff, Livingston Island

description: The Cape Shirreff Phocid Census (CS-PHOC) dataset is part of long-term monitoring efforts at Cape Shirreff, Livingston Island. The National Oceanic and Atmospheric Administration (NOAA) United States Antarctic Marine Living Resources Program (U.S. AMLR) and the Chilean Antarctic Institute (INACH) have conducted synoptic, weekly counts of Southern Ocean phocids hauled out on Cape Shirreff during most austral summers since 1997-98. These census data, which will continue to be collected by the U.S. AMLR program and thus updated yearly, provide a rare and valuable source of information about changes in population trends and area use by Southern Ocean phocids in a climate change hot spot.CS-PHOC is a sampling event type dataset published as open data with technical support provided by SCAR Antarctic Biodiversity Portal (biodiversity.aq) (BELSPO project RT/23/ADVANCE). This dataset is described in the paper “CS-PHOC: weekly census counts of Southern Ocean phocids at Cape Shirreff, Livingston Island” (Woodman et al., 2024). This dataset contains records of Hydrurga leptonyx, Leptonychotes weddellii, Lobodon carcinophagus, and Mirounga leonina census counts at Cape Shirreff, Livingston Island (62.47° S, 60.77° W). All census records were collected by field biologists using binoculars during field expeditions at Cape Shirreff in the austral summers from December 1997 to February 2023.The data is published as a standardized Darwin Core Archive, which contains presence, absence, sex and life stage of Southern Ocean phocids observed in each survey. This dataset is published under the license CC0 1.0. Please follow the guidelines from the SCAR Data Policy (SCAR, 2023) when using the data. A manuscript describing the CS-PHOC dataset is currently in review; if you are interested in the project or have any questions regarding this dataset, please contact us via the contact information provided in the metadata or via data-biodiversity-aq@naturalsciences.be. Issues with dataset can be reported at https://github.com/us-amlr/cs-phocThis dataset is part of the U.S. Antarctic Marine Living Resources program funded by NOAA.
DOI: 10.6084/m9.figshare.4757104.v1
title: XBeach_files.zip

description: XBeach model set up for Harris et al. (2018) Science Advances (in references link). Description of files in readme.
DOI: 10.6084/m9.figshare.14182799.v1
title: Gillings & Scott nocturnal thrush migration archived data

description: Three datasets required to replicate the analyses in Gillings & Scott 2021 Nocturnal flight calling behaviour of thrushes in relation to artificial light at night. Ibis<br>opendata_siteinfo.csv contains the site's geographical information (rounded to preserve confidentiality) and associated artificial light at night data<br>opendata_effort.csv indicates which 30-minute periods were acoustically monitored at each surveyed sited on each recording night<br>opendata_detections.csv containts the timestamps of each detected thrush call at each monitored site<br>These data were analysed using the R code available at https://github.com/BritishTrustForOrnithology/Gillings-Scott-nocturnal-migration-Ibis<br>A fourth dataset, opendata_manual_site_data.csv, is also included. This was not used in the modelling but was used in the paper and contains the total numbers of thrushes detected at two manually operated nocturnal flight call monitoring stations.<br><br><br>
DOI: 10.6084/m9.figshare.24941319.v1
title: LUAD parental vs osimertinib-resistant

description: Gene expression data (FPKM) of three lung adenocarcinoma cell lines (PC-9, HCC827, and H1975) with osimertinib-resistance compared to their parental cell lines.
DOI: 10.6084/m9.figshare.24125949.v1
title: Supplementary Material for: Assessing the Acceptability of Less Invasive Caries Removal Techniques for treating Deep Carious Lesions: A Conjoint Survey among Dentists Practicing in a Midwestern American State”

description: Background: This study identified factors that influence dentists’ decisions regarding less invasive caries removal techniques such as stepwise removal (SW) and selective removal (SE) using a marketing research technique, conjoint analysis. Methods: A survey was sent to 1,434 dentists practicing in Iowa. Dentists were randomly assigned to receive a questionnaire to rate the likelihood they would use either SW/SE in hypothetical clinical scenarios. The scenarios were carefully created by conjoint design and included three relevant attributes: depth of lesion, hardness of carious dentin and patient age. Descriptive and conjoint analysis were performed to assess trade-offs between these attributes, using SPSS Results: The study revealed that depth of lesion was the most important factor in dentists’ decisions (49 importance value) when choosing a SW to treat a deep carious lesion (DCL), followed by hardness of carious dentin and patient age (21 importance value). For the SE-group, depth of the lesion was also the predominant factor when selecting a treatment. The study also identified that a high proportion of dentists (24.9%) indicated they would never consider using SW or SE under any circumstances. Conclusions: Our survey showed that depth of lesion was the most important reason to select a less invasive caries removal method. The high proportion of dentists indicating they would never consider selective caries removal techniques suggests that these less invasive options are underutilized.
DOI: 10.6084/m9.figshare.25686120.v1
title: <b>Seven years of NIFTP: Rate of acceptance and variation of diagnostic approaches across different continents</b>

description: Supplementary material for journal.
DOI: 10.6084/m9.figshare.5561890.v3
title: Data set_Cipro intercalation on NaFh.xlsx

description: The Excel file contains 8 sheets with all minimal data set.<br>
DOI: 10.6084/m9.figshare.28774883.v1
title: SYNCode (Data)

description: SYNCode is a collaborative annotation framework that combines human expertise with large language models (LLMs) to improve the quality of annotations for complex, code-centric datasets like Stack Overflow. The system integrates TF-IDF filtering, advanced transformer models (NLP Transformer and UniXcoder), and iterative human refinement to enhance annotation accuracy and reduce bias. A prototype interface enables real-time human-LLM collaboration, demonstrating strong potential for improving annotation reliability in software engineering and NLP applications.
DOI: 10.17632/c5txzyhffp
title: Data for: A systematic map of research exploring the effect of greenspace on mental health

description: Summary of the included studies' characteristics used for analysis.
DOI: 10.6084/m9.figshare.28746281.v2
title: Corona.zip

description: Download our Sentinel-2 imagery dataset to facilitate your model training processes. This high-resolution, multispectral collection is ideal for applications in emergency response, transportation, and wildfire detection. This training area covers the community of Corona, California.
DOI: 10.17632/dty9vbzvdz
title: Moche Radiocarbon Dates and Bayesian Models

description: These are the supplementary materials to accompany the article: "Moche Chronology of Ancient Peru: Bayesian Assessment of Radiocarbon Dates and Ceramic Styles from North to South."

Supplementary Material 1: This Excel file contains known Moche radiocarbon dates and contexts. Tabs within this spreadsheet are 1) All dates; 2) Dates rejected from all the Bayesian models produced for the study; 3) Dates used in one or more of the models; 4) Potential outlier dates based on modeled results; 5) Dates from humans and animals that may be subject to mixed carbon reservoir effects; 6) Dates from the sites of Pampa Grande and Batán Grande.
 
Supplementary Material 2: This Excel file contains 1) Table 1 - Moche sites and the number of radiocarbon dates; 2) A key to the Bayesian models; 3) Summary of dates by Moche ceramic style/ phase; 4) The start and end boundary posteriors for the modeled Moche ceramic styles/phases; 5) The year span posteriors for each style/phase; 6) The order probabilities for each start and end boundary posterior generated by the models
 
Supplementary Material 3: This is a folder that contains all the Bayesian models produced for this study. Some of the models make use of priors which extract information from other files to run. It is thus necessary that all of these files are in the same directory when working with the models.
DOI: 10.6084/m9.figshare.12220226.v5
title: genotypes of CUBIC population

description: 200knew.txt：200K array SNPs of CUBIC populationchr1.75.vcf.gz：chr1 SNPs(re-sequencing SNPs and 200K array SNPs) of CUBIC populationchr2.75.gz.vcf：chr2 SNPs(re-sequencing SNPs and 200K array SNPs) of CUBIC population<br>chr3.75.gz.vcf：chr3 SNPs(re-sequencing SNPs and 200K array SNPs) of CUBIC population<br>chr4.75.gz.vcf：chr4 SNPs(re-sequencing SNPs and 200K array SNPs) of CUBIC population<br>chr5.75.gz.vcf：chr5 SNPs(re-sequencing SNPs and 200K array SNPs) of CUBIC population<br>chr6.75.gz.vcf：chr6 SNPs(re-sequencing SNPs and 200K array SNPs) of CUBIC population<br>chr7.75.gz.vcf：chr7 SNPs(re-sequencing SNPs and 200K array SNPs) of CUBIC population<br>chr8.75.gz.vcf：chr8 SNPs(re-sequencing SNPs and 200K array SNPs) of CUBIC population<br>chr9.75.gz.vcf：chr9 SNPs(re-sequencing SNPs and 200K array SNPs) of CUBIC population<br>chr10.75.gz.vcf：chr10 SNPs(re-sequencing SNPs and 200K array SNPs) of CUBIC population<br>
DOI: 10.6084/m9.figshare.27923247.v1
title: Supplementary Material for: In vivo study to evaluate an intelligent algorithm for time efficient detection of malignant melanoma using dermatofluoroscopy

description: Introduction: Dermatofluoroscopy is an optical non-invasive method of melanoma/nevus differentiation that has shown 89% sensitivity and 45% specificity in clinical trials, but long measurement duration hinders clinical use. An intelligent algorithm was developed to 
shorten the measurement time without compromising its diagnostic accuracy. It uses dermoscopic images of the skin lesions to be measured to select measurement points based on the assessment of color values.
Methods: 27 patients with a total of 29 lesions suggestive of cutaneous melanoma were included in a clinical study and measured with both methods, conventional dermatofluoroscopy and the newly developed intelligent algorithm. The results were compared to the independent findings of two histopathologists to evaluate diagnostic accuracy and time saved. 
Results: There was a median reduction of measurement points from 265 to 158 (40%). Meanwhile, the intelligent algorithm showed a higher diagnostic accuracy than conventional dermatofluoroscopy (AUC of 72% vs. 63%).
Conclusion: The intelligent algorithm did not perform inferior to the conventional method while saving 40% of time. However, measurement times remain long compared to other non-invasive methods of diagnosing malignant melanoma. Further studies are needed to evaluate clinical suitability.
DOI: 10.17632/93v26fj77w
title: Data for: An approach to fabricate high performance cooler with nearly ideal emissive spectrum for above ambient radiative cooling

description: These are the research data files of "An approach to fabricate high performance cooler with nearly ideal emissive spectrum for above ambient radiative cooling".
DOI: 10.6084/m9.figshare.20407368.v3
title: Data from "Weak reproductive isolation and extensive gene flow between Mimulus glaucescens and M. guttatus in northern California" published in Evolution (https://doi.org/10.1093/evolut/qpad044).

description: Data used to characterize species boundaries between Mimulus glaucescens and M. guttatus