cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4527600
title: Why do Builds Fail? – A Conceptual Replication Study

description: This package is our dataset of a replication study of Rausch et al. and Zolfagharina et al. to explore features relation with Build Failure. The Rausch et al. paper: An empiricalanalysis of build failures in the continuous integration work-flows of java-based open-source software The Zolfagharina et al. paper: Do Not Trust Build Results at Face Value – An Empirical Study of 30 Million CPAN Builds We replicate 7 features dimension from Rausch et al. and 1 dimension from Zolfagharina et al. and we added also 2 features dimensions about code quality using code and test smells. Paper Link: https://mcis.cs.queensu.ca/publications/2021/jss_amine.pdf
DOI: 10.5281/zenodo.4525685
title: Dataset related to article "ACE2 and TMPRSS2 variants and expression as candidates to sex and country differences in COVID-19 severity in Italy"

description: This record contains data related to article "<em>ACE2</em> and <em>TMPRSS2</em> variants and expression as candidates to sex and country differences in COVID-19 severity in Italy" Abstract: As the outbreak of coronavirus disease 2019 (COVID-19) progresses, prognostic markers for early identification of high-risk individuals are an urgent medical need. Italy has one of the highest numbers of SARS-CoV-2-related deaths and one of the highest mortality rates. Worldwide, a more severe course of COVID-19 is associated with older age, comorbidities, and male sex. Hence, we searched for possible genetic components of COVID-19 severity among Italians by looking at expression levels and variants in <em>ACE2</em> and <em>TMPRSS2</em> genes, crucial for viral infection. Exome and SNP-array data from a large Italian cohort were used to compare the rare-variants burden and polymorphisms frequency with Europeans and East Asians. Moreover, we looked into gene expression databases to check for sex-unbalanced expression. While we found no significant evidence that <em>ACE2</em> is associated with disease severity/sex bias, <em>TMPRSS2</em> levels and genetic variants proved to be possible candidate disease modulators, prompting for rapid experimental validations on large patient cohorts.
DOI: 10.5281/zenodo.4525684
title: Dataset related to article "ACE2 and TMPRSS2 variants and expression as candidates to sex and country differences in COVID-19 severity in Italy"

description: This record contains data related to article "<em>ACE2</em> and <em>TMPRSS2</em> variants and expression as candidates to sex and country differences in COVID-19 severity in Italy" Abstract: As the outbreak of coronavirus disease 2019 (COVID-19) progresses, prognostic markers for early identification of high-risk individuals are an urgent medical need. Italy has one of the highest numbers of SARS-CoV-2-related deaths and one of the highest mortality rates. Worldwide, a more severe course of COVID-19 is associated with older age, comorbidities, and male sex. Hence, we searched for possible genetic components of COVID-19 severity among Italians by looking at expression levels and variants in <em>ACE2</em> and <em>TMPRSS2</em> genes, crucial for viral infection. Exome and SNP-array data from a large Italian cohort were used to compare the rare-variants burden and polymorphisms frequency with Europeans and East Asians. Moreover, we looked into gene expression databases to check for sex-unbalanced expression. While we found no significant evidence that <em>ACE2</em> is associated with disease severity/sex bias, <em>TMPRSS2</em> levels and genetic variants proved to be possible candidate disease modulators, prompting for rapid experimental validations on large patient cohorts.
DOI: 10.5063/kw5dfc
title: Frog incidence frequency and soundscape diversity data used to construct the case study in Luypaert et al. (2021)

description: This data was used to construct the case study in:ENTER FULL REFERENCE HERE ONCE PUBLISHED1. Frog incidence frequency dataThis data represents a subset of the data described in:Bueno, A. S., Masseli, G. S., Kaefer, I. L., & Peres, C. A. (2020). Sampling design may obscure species–area relationships in landscape‐scale field studies.Ecography, 43(1), 107-118.The data consists of a subset of 105 sites on 62 forest islands and 4 continuous forest sites. The data was obtained for the project Ecological Impacts of River Damming on Forest Bird Assemblages in the Brazilian Amazon. Find out more at https://www.rufford.org/projects/anderson_saldanha_bueno.Raw data files corresponding to these frog observations are available for inspection on the ARBIMON platform:https://arbimon.rfcx.org/project/soundscape-frogdiv-relationship2. Acoustic index dataFor the purposes of the case study described in Luypaert et al. (2021), the oscillation index was used. The oscillation index was computed using a sampling rate of 41,000 Hz and a window size of 256. This metric quantifies the number of pulses, or amplitude modulations per second, and acoustic feature typical of insect and frog vocalizations. Indices were computed in the R programming language using the 'index_calc' function in the soundscapeR package (https://github.com/ThomasLuypaertGitHub/soundscapeR), which in turn calls on the QUT Ecoacoustics Analysis Programs software for its index computations (https://ap.qut.ecoacoustics.info/tutorials/01-usingap/practical?tabs=windows).
DOI: 10.5281/zenodo.4529097
title: GMRT radiometric data of Venus observation campaign conducted during 2004

description: The folder contains all the data of the radiometric observation campaign of Venus using the GMRT carried out during 2004. The data have been used in the publication of the paper, "Radio observation of Venus at meter wavelengths using the GMRT, by Mohan et al (2017)". The data can also be obtained from the GMRT data archive (https://naps.ncra.tifr.res.in/goa/data/search) with proposal code 05BBA01.
DOI: 10.5281/zenodo.4529000
title: Data set from Magon A, Arrigoni C, Moia M, Mancini M, Dellafiore F, Manara DF, Caruso R. Determinants of health-related quality of life: a cross-sectional investigation in physician-managed anticoagulated patients using vitamin K antagonists. Health Qual Life Outcomes. 2020 Mar 16;18(1):73. doi: 10.1186/s12955-020-01326-y. PMID: 32178684; PMCID: PMC7077005.

description: Data set from the article Magon A, Arrigoni C, Moia M, Mancini M, Dellafiore F, Manara DF, Caruso R. Determinants of health-related quality of life: a cross-sectional investigation in physician-managed anticoagulated patients using vitamin K antagonists. Health Qual Life Outcomes. 2020 Mar 16;18(1):73. doi: 10.1186/s12955-020-01326-y. PMID: 32178684; PMCID: PMC7077005. <em><strong>Abstract</strong></em> <strong>Background: </strong>Literature has paid little attention in describing the specific contribution of each modifiable and non-modifiable characteristics on health-related quality of life (HRQoL) in physician-managed anticoagulated patients using vitamin K antagonists (VKAs). To describe how patients' treatment-specific knowledge, health literacy, treatment beliefs, clinical, and socio-demographic characteristics influence HRQoL in Italian physician-managed anticoagulated patients using VKAs. <strong>Methods: </strong>Cross-sectional multicentre study with a consecutive sampling strategy, enrolling 164 long-term anticoagulated patients. Clinical and socio-demographic characteristics were collected from electronic medical records. Valid and reliable questionnaires were used to collect patients' treatment-specific knowledge, health literacy, beliefs about VKAs, physical and health perceptions. <strong>Results: </strong>Obtaining and understanding health information (i.e., communicative health literacy) positively predicts both adequate mental (OR<sub>adjusted</sub> = 10.9; 95%CI = 1.99-19.10) and physical (OR<sub>adjusted</sub> = 11.54; 95%CI = 1.99-34.45) health perceptions. Conversely, the ability to perform proper health decision making (i.e., critical health literacy) was associated with lower rates of adequate mental health perception (OR<sub>adjusted</sub> = 0.13; 95%CI = 0.03-0.63). Further, age negatively predicted physical health perception (OR<sub>adjusted</sub> = 0.87; 95%CI = 0.81-0.93). <strong>Conclusions: </strong>Health literacy plays an interesting role in predicting HRQoL. The relationship between critical health literacy and mental health perception could be influenced by some psychological variables, such as distress and frustration, which could be present in patients with higher levels of critical health literacy, as they could be more inclined for self-monitoring. For this reason, future research are needed to identify the most suitable patients' profile for each OAC-management model, by longitudinally describing the predictive performance of each modifiable and non-modifiable determinant of HRQoL.
DOI: 10.5281/zenodo.4528999
title: Data set from Magon A, Arrigoni C, Moia M, Mancini M, Dellafiore F, Manara DF, Caruso R. Determinants of health-related quality of life: a cross-sectional investigation in physician-managed anticoagulated patients using vitamin K antagonists. Health Qual Life Outcomes. 2020 Mar 16;18(1):73. doi: 10.1186/s12955-020-01326-y. PMID: 32178684; PMCID: PMC7077005.

description: Data set from the article Magon A, Arrigoni C, Moia M, Mancini M, Dellafiore F, Manara DF, Caruso R. Determinants of health-related quality of life: a cross-sectional investigation in physician-managed anticoagulated patients using vitamin K antagonists. Health Qual Life Outcomes. 2020 Mar 16;18(1):73. doi: 10.1186/s12955-020-01326-y. PMID: 32178684; PMCID: PMC7077005. <em><strong>Abstract</strong></em> <strong>Background: </strong>Literature has paid little attention in describing the specific contribution of each modifiable and non-modifiable characteristics on health-related quality of life (HRQoL) in physician-managed anticoagulated patients using vitamin K antagonists (VKAs). To describe how patients' treatment-specific knowledge, health literacy, treatment beliefs, clinical, and socio-demographic characteristics influence HRQoL in Italian physician-managed anticoagulated patients using VKAs. <strong>Methods: </strong>Cross-sectional multicentre study with a consecutive sampling strategy, enrolling 164 long-term anticoagulated patients. Clinical and socio-demographic characteristics were collected from electronic medical records. Valid and reliable questionnaires were used to collect patients' treatment-specific knowledge, health literacy, beliefs about VKAs, physical and health perceptions. <strong>Results: </strong>Obtaining and understanding health information (i.e., communicative health literacy) positively predicts both adequate mental (OR<sub>adjusted</sub> = 10.9; 95%CI = 1.99-19.10) and physical (OR<sub>adjusted</sub> = 11.54; 95%CI = 1.99-34.45) health perceptions. Conversely, the ability to perform proper health decision making (i.e., critical health literacy) was associated with lower rates of adequate mental health perception (OR<sub>adjusted</sub> = 0.13; 95%CI = 0.03-0.63). Further, age negatively predicted physical health perception (OR<sub>adjusted</sub> = 0.87; 95%CI = 0.81-0.93). <strong>Conclusions: </strong>Health literacy plays an interesting role in predicting HRQoL. The relationship between critical health literacy and mental health perception could be influenced by some psychological variables, such as distress and frustration, which could be present in patients with higher levels of critical health literacy, as they could be more inclined for self-monitoring. For this reason, future research are needed to identify the most suitable patients' profile for each OAC-management model, by longitudinally describing the predictive performance of each modifiable and non-modifiable determinant of HRQoL.
DOI: 10.5281/zenodo.4528994
title: CBA source data

description: This document is used to teach you how to use CBA codes.<br> The code is made using Keras (Spyder) and uses R package (KBET), it was downloaded in its homepage.<br> We use three datasets: pancreas, lung and chimpanzee Codes for the pancreas datasets are commented, so similar codes in LUNG and SPECIES are not commented.<br> But if you read codes with comments in PANCREAS, other codes will be easy to be understood. ATTENTION: you need to read the script 'pancreas_main.py' firstly, understand the comments in it. So how to use CBA?<br> First download datasets, and put them in the corresponding file. Then select parameters as you like, and do the training. You will need python and R language to run them. Moreover, if you want to use the codes on other datasets, you need to put them in the codes, select parameters, and do the training. Thank you!
DOI: 10.5281/zenodo.4528993
title: CBA source data

description: This document is used to teach you how to use CBA codes.<br> The code is made using Keras (Spyder) and uses R package (KBET), it was downloaded in its homepage.<br> We use three datasets: pancreas, lung and chimpanzee Codes for the pancreas datasets are commented, so similar codes in LUNG and SPECIES are not commented.<br> But if you read codes with comments in PANCREAS, other codes will be easy to be understood. ATTENTION: you need to read the script 'pancreas_main.py' firstly, understand the comments in it. So how to use CBA?<br> First download datasets, and put them in the corresponding file. Then select parameters as you like, and do the training. You will need python and R language to run them. Moreover, if you want to use the codes on other datasets, you need to put them in the codes, select parameters, and do the training. Thank you!
DOI: 10.25625/ihezue/2hdqox
title: Comparative_Ecology_GB_raw.tab

description: :unav
DOI: 10.25625/ihezue
title: Data for: Comparative Ecology of Guinea Baboons

description: Data for publication "Comparative Ecology of Guinea Baboons". Locational data from GPS collars of 15 individuals of Guinea baboons in the Niokolo Koba National Park, Senegal across 3 years, 2010 - 2012.
DOI: 10.6084/m9.figshare.13849691
title: Supplementary Material for: ctDNA in Neuroendocrine Carcinoma of Gastroenteropancreatic Origin or of Unknown Primary: The CIRCAN-NEC Pilot Study

description: <b><i>Introduction:</i></b> Gastroenteropancreatic neuroendocrine carcinomas (GEPNEC) are characterized by a heterogeneous molecular profile and a poor prognosis. Circulating tumour DNA (ctDNA) analysis may be useful for NEC management. This study aimed at describing ctDNA mutations, to assess their predictive value for response to chemotherapies, and their change according to disease progression. <b><i>Methods:</i></b> The CIRCAN-NEC study included patients with GEPNEC or NEC from an unknown primary, scheduled to begin first- or second-line chemotherapy. Blood samples were collected prior to chemotherapy initiation, at first evaluation, and during disease progression. ctDNA was sequenced by next-generation sequencing (NGS). Molecular response was defined as a decrease of at least 30% of the mutant allele fraction. <b><i>Results:</i></b> All 24 patients included received platinum-etoposide first-line chemotherapy; 19 received a FOLFIRI-based post-first-line regimen. Twenty-two patients had at least one driver mutation: <i>TP53</i> (<i>n</i> = 21), <i>RB1</i> (<i>n</i> = 2), <i>KRAS</i> (<i>n</i> = 4), and <i>BRAF</i> (<i>n</i> = 3). Ten (42%) had an “adenocarcinoma-like” profile. Five of 6 patients with matching ctDNA/tissue NGS harboured at least one concordant mutation (44% concordance at the gene level). The concordance rate between ctDNA mutation/immunohistochemistry profile was 64% (7/11) for <i>TP53</i>/p53+ and 14% (1/7) for <i>RB1</i>/pRb−. In this pilot study including few patients by subgroups, patients with <i>KRAS</i> (HR = 3.60, 95% CI [1.06–12.04]) and <i>BRAF</i> (HR = 4.25, 95% CI [1.11–16.40]) mutations had shorter progression-free survival (PFS) under platinum-etoposide, while the 2 patients with <i>RB1</i> mutations had shorter PFS under FOLFIRI-based chemotherapy. Twenty-eight periods of treatment were assessed: 10 patients had a molecular response (7/10 had a morphological response), which was associated with longer PFS (HR = 0.37, 95% CI [0.15; 0.91]). <b><i>Conclusion:</i></b> This pilot study shows a high sensitivity of ctDNA assessment, which is encouraging for the future management of GEPNEC (tumour molecular diagnosis and evaluation of disease progression).
DOI: 10.6084/m9.figshare.13850228
title: Supplementary Material for: Treatment of Pemphigus with Rituximab: Real-Life Experience in a Cohort of 117 Patients in Israel

description: <b><i>Background:</i></b> A combined regimen of rituximab with corticosteroids for the treatment of pemphigus was effective in a prospective randomized controlled trial. <b><i>Objective:</i></b> To assess real-life response to rituximab in patients with pemphigus. <b><i>Methods:</i></b> A retrospective cohort of patients with pemphigus treated with ≥1 rituximab cycles (1,000 mg on days 0 and 14). The primary outcome was remission rate after 1 cycle. For efficacy analyses, a minimal 6-month follow-up was required. Adverse events were assessed in all patients. <b><i>Results:</i></b> The cohort included 117 patients for safety analysis, 108 for efficacy analysis (median follow-up of 33 months). All but one received concomitant corticosteroids, a third also received adjuvants. Overall, 80/108 patients (74%) achieved remission after the first rituximab cycle at a median of 5.5 months. Relapses occurred in 39 patients (49%) at a median of 18 months. Repeating treatment in relapsed patients increased remission rates to 75 and 88% after the second and third cycles, respectively. Adverse events were similar to those of previous publications. Two elderly patients died of infections attributable to rituximab combined with high-dose corticosteroids. <b><i>Conclusion:</i></b> In a large real-life long-term cohort, rituximab with corticosteroids ± adjuvants induced remission in most patients with pemphigus, with relatively favorable safety. Repeating treatment following relapse or remission failure was beneficial.
DOI: 10.6084/m9.figshare.13850426
title: Supplementary Material for: Teledermatology in Times of COVID-19 Confinement: Comparing Patients’ and Physicians’ Satisfaction by the Standardized Brest Teledermatology Questionnaire

description: The French government imposed the first COVID-19 pandemic lockdown from March 17 until May 11, 2020. Only emergency cases and teledermatology (TD) were allowed in outpatient settings. A standardized questionnaire was developed to compare the satisfaction level of patients and their treating physicians. Our main question was whether the patients would perceive TD as a valid alternative for direct physical face-to-face consultation. Eighty-two patients and their 4 treating dermatologists from one dermatology department participated in the study (43 females, 39 males) with a mean age of 46.6 years (SD ±23.9). The reason for TD was a chronic disease in the majority (87.8%), and mainly as a follow-up (96.3%). Regarding satisfaction, almost all categories rated around 9 on a 0–10 verbal analogue scale. The same level of global satisfaction could be seen between the patients and the physicians as well as for the quality of the patient-physician relation and whether all questions could be addressed during the TC. Physicians showed significantly higher scores than patients only for the category of “length” of the consultation. Gender, age, as well as distance between the clinic and home of the patient were not influencing factors for satisfaction. Regarding the technical parameters, the evaluation was mostly comparable for patients and physicians, but overall lower than the relational satisfaction parameters, especially for image quality. Patients were significantly more motivated to continue the TD after the lockdown than their treating dermatologists. We see an interest for implementing TD in specialized centers with chronic patients coming from remote places for regular follow-ups. TD cannot replace in-person patient-physician interaction, but was helpful during the lockdown. As a result, TD might become part of dermatology training to prepare for future lockdown situations.
DOI: 10.18746/bmth.data.00000108
title: Hybridisation and genetic population structure of Alosa population in United Kingdom
DOI: 10.5281/zenodo.4529116
title: Data set from Mazzaccaro D, Berti F, Antonini L, Pennati G, Petrini L, Migliavacca F, Nano G. Biomechanical interpretation of observed fatigue fractures of peripheral Nitinol stents in the superficial femoral arteries through in silico modelling. Med Hypotheses. 2020 Sep;142:109771. doi: 10.1016/j.mehy.2020.109771. Epub 2020 May 4. PMID: 32408069.

description: Data set from the article Mazzaccaro D, Berti F, Antonini L, Pennati G, Petrini L, Migliavacca F, Nano G. Biomechanical interpretation of observed fatigue fractures of peripheral Nitinol stents in the superficial femoral arteries through in silico modelling. Med Hypotheses. 2020 Sep;142:109771. doi: 10.1016/j.mehy.2020.109771. Epub 2020 May 4. PMID: 32408069. <strong>Abstract </strong> <strong>Purpose: </strong>To suggest an in silico modelling approach to estimate the fatigue failure on peripheral Nitinol stents implanted in the superficial femoral artery (SFA) and interpret the clinically observed stent fractures of a retrospective series of patients. <strong>Materials and methods: </strong>Preoperative data of 27 patients who underwent SFA Nitinol stenting were retrospectively analyzed. Data about preoperative features of the SFA and the lesion were collected. Follow-up data were also collected about the occurrence of restenosis/occlusion and stent fracture. <strong>Results: </strong>After a lengthening of the entire vessel, the occluded region was slightly stretched due to its high stiffness, whereas the healthy regions accommodated the artery length variation. The stent fatigue was predicted to be higher in the regions of low stiffness and higher shortening. In 7 out of 27 patients a stent fracture was clinically recorded. The model resulted to be accurate in 90% of the cases. <strong>Conclusions: </strong>The clinical outcomes in terms of biomechanical fatigue behavior of peripheral Nitinol stents of the SFA could be interpreted by our new approach.