cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/ghuepb
title: Nine new species of the Anaulacomerina subtribe of katydids (Orthoptera Tettigoniidae: Phaneropterinae: Phaneropterini) from Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fianco, Marcos (2021): Nine new species of the Anaulacomerina subtribe of katydids (Orthoptera Tettigoniidae: Phaneropterinae: Phaneropterini) from Brazil. Zootaxa 4952 (1): 33-54, DOI: https://doi.org/10.11646/zootaxa.4952.1.2
DOI: 10.6084/m9.figshare.14410376.v1
title: Cat Parentage Panel

description: Breed by marker statistics for population survey of candidate SNPs for cat parentage panel<br>
DOI: 10.6084/m9.figshare.14410376
title: Cat Parentage Panel

description: Breed by marker statistics for population survey of candidate SNPs for cat parentage panel<br>
DOI: 10.17632/ynnk5bmdrt.3
title: Compilation of air pollution measurements based on air quality monitoring stations of Chief Inspectorate for Environmental Protection (GIOŚ) in Poland for 2018 - processed data file.

description: The database contains both raw measurement data and processed data as well. Raw data describing the measurements of air pollution comes from the environmental monitoring network of the Chief Inspectorate for Environmental Protection (GIOŚ) in Poland. Measures taken by the Chief Inspectorate for Environmental Protection are based on criteria set out in Directive 2008/50/EC of the European Parliament and of the Council of 21 May 2008 on ambient air quality and cleaner air for Europe, and Directive 2004/107/EC of the European Parliament and of the Council of 15 December 2004 relating to arsenic, cadmium, nickel, mercury and polycyclic aromatic hydrocarbons in ambient air. Accordingly, the air levels assessed are SO2, NO2, CO, C6H6, O3, PM10, PM2.5 as well as heavy metals and benzo(a)pyrene determined in PM10. The data are freely available to everyone, however, the raw data express daily measurements, which require prior processing and averaging to monthly and yearly averages. The dataset cover measuring points all over Poland, however, the number of measurements of individual pollutants varies, which results from the fact that not all measuring stations measure the same set of parameters. The air quality assessment is conducted in 46 zones, consisting of 12 agglomerations, 18 cities of more than 100,000 inhabitants, and 16 voivodeship areas which do not include the above-mentioned agglomerations and cities of more than 100,000 inhabitants. The number of measuring points for individual pollutants is given below: - PM10: 156 measurement stations; - PM2.5: 65 measurement stations; - B(a)P: 131 measurement stations; - SO2: 123 measurement stations; - NOx and NO2: 133 measurement stations; - CO: 71 measurement stations.
DOI: 10.18434/mds2-2376
title: Sample code and data for "Accurate localization microscopy by intrinsic aberration calibration"
DOI: 10.6084/m9.figshare.14241884
title: Genome-wide variation in DNA methylation predicts variation in leaf traits in a foundational oak species

description: <b>Abstract:</b> As forests face the challenge of adapting to a changing climate, epigenetic modifications like DNA methylation are a potential mechanism for trees to respond to unstable environments. However, it remains controversial the extent to which DNA methylation impacts ecologically important traits that influence fitness. In this study, we used reduced-representation bisulfite sequencing to associate genomic and epigenomic variation with seven phenotypic traits related to growth, leaf function, and disease susceptibility in 160 valley oak (Quercus lobata) saplings planted across two common gardens in California. We found that DNA methylation was associated with a significant fraction of phenotypic variance in plant height, leaf lobedness, powdery mildew infection, and trichome density. Two of the seven traits were significantly associated with DNA methylation in the CG context, three traits were significantly associated with CHG methylation, and two traits were significantly associated with CHH methylation. Notably, controlling for genomic variation in SNPs generally reduced the amount of trait variation explained by DNA methylation. Our results suggest that DNA methylation may serve as a useful biomarker to predict phenotypic variation in forest tree species, though it remains unclear the degree to which DNA methylation is a causal mechanism driving phenotypic variation in forest tree species.
DOI: 10.6084/m9.figshare.14241884.v2
title: Genome-wide variation in DNA methylation predicts variation in leaf traits in a foundational oak species

description: <b>Abstract:</b> As forests face the challenge of adapting to a changing climate, epigenetic modifications like DNA methylation are a potential mechanism for trees to respond to unstable environments. However, it remains controversial the extent to which DNA methylation impacts ecologically important traits that influence fitness. In this study, we used reduced-representation bisulfite sequencing to associate genomic and epigenomic variation with seven phenotypic traits related to growth, leaf function, and disease susceptibility in 160 valley oak (Quercus lobata) saplings planted across two common gardens in California. We found that DNA methylation was associated with a significant fraction of phenotypic variance in plant height, leaf lobedness, powdery mildew infection, and trichome density. Two of the seven traits were significantly associated with DNA methylation in the CG context, three traits were significantly associated with CHG methylation, and two traits were significantly associated with CHH methylation. Notably, controlling for genomic variation in SNPs generally reduced the amount of trait variation explained by DNA methylation. Our results suggest that DNA methylation may serve as a useful biomarker to predict phenotypic variation in forest tree species, though it remains unclear the degree to which DNA methylation is a causal mechanism driving phenotypic variation in forest tree species.
DOI: 10.5517/ccdc.csd.cc27m6rv
title: CCDC 2074047: Experimental Crystal Structure Determination

description: Related Article: A.J. Cigler, J.A. Kaduk|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|500|doi:10.1107/S2056989021003339
DOI: 10.5517/ccdc.csd.cc27m7w0
title: CCDC 2074082: Experimental Crystal Structure Determination

description: Related Article: E. Samoľová, A. Dehno Khalaji, V. Eigner|2021|IUCrData|6|x210335|doi:10.1107/S2414314621003357
DOI: 10.5517/ccdc.csd.cc27m8fl
title: CCDC 2074099: Experimental Crystal Structure Determination

description: Related Article: C. Harish Chinthal, H.S. Yathirajan, N. Manju, B. Kalluraya, S. Foro, C. Glidewell|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|473|doi:10.1107/S2056989021003364
DOI: 10.5517/ccdc.csd.cc27m8gm
title: CCDC 2074100: Experimental Crystal Structure Determination

description: Related Article: C. Harish Chinthal, H.S. Yathirajan, N. Manju, B. Kalluraya, S. Foro, C. Glidewell|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|473|doi:10.1107/S2056989021003364
DOI: 10.5517/ccdc.csd.cc27m8hn
title: CCDC 2074101: Experimental Crystal Structure Determination

description: Related Article: C. Harish Chinthal, H.S. Yathirajan, N. Manju, B. Kalluraya, S. Foro, C. Glidewell|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|473|doi:10.1107/S2056989021003364
DOI: 10.5517/ccdc.csd.cc27myzt
title: CCDC 2074767: Experimental Crystal Structure Determination

description: Related Article: J. Pacifico, H. Stoeckli-Evans|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|480|doi:10.1107/S2056989021003479
DOI: 10.5517/ccdc.csd.cc27mz0w
title: CCDC 2074768: Experimental Crystal Structure Determination

description: Related Article: J. Pacifico, H. Stoeckli-Evans|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|480|doi:10.1107/S2056989021003479
DOI: 10.5517/ccdc.csd.cc27mz1x
title: CCDC 2074769: Experimental Crystal Structure Determination

description: Related Article: J. Pacifico, H. Stoeckli-Evans|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|480|doi:10.1107/S2056989021003479
DOI: 10.5517/ccdc.csd.cc27mz2y
title: CCDC 2074770: Experimental Crystal Structure Determination

description: Related Article: J. Pacifico, H. Stoeckli-Evans|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|480|doi:10.1107/S2056989021003479
DOI: 10.5517/ccdc.csd.cc27n1lk
title: CCDC 2074848: Experimental Crystal Structure Determination

description: Related Article: G. Khanum, A. Fatima, P. Sharma, S.K. Srivastava, R.J. Butcher|2021|IUCrData|6|x210351|doi:10.1107/S2414314621003515
DOI: 10.5517/ccdc.csd.cc27n6jn
title: CCDC 2075001: Experimental Crystal Structure Determination

description: Related Article: E. Samoľová, A. Dehno Khalaji, V. Eigner|2021|IUCrData|6|x210356|doi:10.1107/S2414314621003564
DOI: 10.5517/ccdc.csd.cc27nh5l
title: CCDC 2075269: Experimental Crystal Structure Determination

description: Related Article: N. Mahesha, H.S. Yathirajan, H.A. Nagma Banu, B. Kalluraya, S. Foro, C. Glidewell|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|504|doi:10.1107/S2056989021003637
DOI: 10.5517/ccdc.csd.cc27nh6m
title: CCDC 2075270: Experimental Crystal Structure Determination

description: Related Article: N. Mahesha, H.S. Yathirajan, H.A. Nagma Banu, B. Kalluraya, S. Foro, C. Glidewell|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|504|doi:10.1107/S2056989021003637
DOI: 10.5517/ccdc.csd.cc27nh7n
title: CCDC 2075271: Experimental Crystal Structure Determination

description: Related Article: N. Mahesha, H.S. Yathirajan, H.A. Nagma Banu, B. Kalluraya, S. Foro, C. Glidewell|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|504|doi:10.1107/S2056989021003637
DOI: 10.5517/ccdc.csd.cc27ny84
title: CCDC 2075706: Experimental Crystal Structure Determination

description: Related Article: F.N. Naghiyev, T.A. Tereshina, V.N. Khrustalev, M. Akkurt, R.M. Rzayev, A.A. Akobirshoeva, İ.G. Mamedov|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|516|doi:10.1107/S2056989021003583
DOI: 10.5517/ccdc.csd.cc27nynj
title: CCDC 2075718: Experimental Crystal Structure Determination

description: Related Article: F.N. Naghiyev, T.A. Tereshina, V.N. Khrustalev, M. Akkurt, A.N. Khalilov, A.A. Akobirshoeva, İ.G. Mamedov|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|512|doi:10.1107/S2056989021003625
DOI: 10.6084/m9.figshare.14410310.v1
title: Gut health pop press data html + Summary (PDF)

description: Article scrape in HMTL + PDF Summary of original n
DOI: 10.15468/59aqqt
title: Larval morphologyof three syntopic species of Kaloula Gray (Anura: Microhylidae) from Vietnam

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vassilieva, Anna B. (2021): Larval morphologyof three syntopic species of Kaloula Gray (Anura: Microhylidae) from Vietnam. Zootaxa 4952 (1): 71-86, DOI: https://doi.org/10.11646/zootaxa.4952.1.4
DOI: 10.6084/m9.figshare.14410388
title: Raw Data: NetLogo Simulations of Evacuee Response to Emergency Communications

description: Raw data (csv files) from the NetLogo simulations for evacuee responses to emergency communications. Belonging to: Van der Wal, C.N., Formolo, D., Robinson, M.A., Gwynne, S. Examining Evacuee Response to Emergency Communications with Agent-Based Simulations. <i>Sustainability</i>, 2021, 13, accepted for publication.
DOI: 10.6084/m9.figshare.14410427.v1
title: KNOWLEDGE OF OBSTETRIC DANGER SIGNS AND ITS EFFECT ON 4+ ANC VISITS, BPCR, SBA USE DURING DELIVERY AND PNC WITHIN 48 HOURS POST-DELIVERY AMONG WOMEN WHO GAVE BIRTH IN THE PAST 24 MONTHS AT BABATI RURAL NORTHERN TANZANIA

description: <b><sup>Community-based analytical cross-sectional study was conducted in July 2019 among women who delivered in the past 24 months in two wards at Babati Rural district, Tanzania. Standard Questionnaire was used for data collection.</sup></b><b><sup>A Swahili questionnaire was used to collect information from the participants. The questionnaire had closed and open-ended questions and consists of six sub-sections. The first part collected information on socio-demographic and socio-economic characteristics, second was reproductive and maternal health history, and third part collected information on ANC use, place of delivery and use of skilled birth attendant during the last pregnancy. The fourth section collected information on knowledge of danger signs during pregnancy, labor and childbirths and after delivery, and fifth on having birth preparedness and complication readiness plan for the last pregnancy. Post-Natal Care practice after delivery was the last section.</sup></b><b><sup>The interviews were conducted at either participant’s home, or at health facility room depending on the preference of the participant. After finishing data collection verbal observation from the field was shared with the DMO, which will be followed by a full research report of the study after completion.</sup></b><b><br></b>
DOI: 10.6084/m9.figshare.14410427
title: KNOWLEDGE OF OBSTETRIC DANGER SIGNS AND ITS EFFECT ON 4+ ANC VISITS, BPCR, SBA USE DURING DELIVERY AND PNC WITHIN 48 HOURS POST-DELIVERY AMONG WOMEN WHO GAVE BIRTH IN THE PAST 24 MONTHS AT BABATI RURAL NORTHERN TANZANIA

description: <b><sup>Community-based analytical cross-sectional study was conducted in July 2019 among women who delivered in the past 24 months in two wards at Babati Rural district, Tanzania. Standard Questionnaire was used for data collection.</sup></b><b><sup>A Swahili questionnaire was used to collect information from the participants. The questionnaire had closed and open-ended questions and consists of six sub-sections. The first part collected information on socio-demographic and socio-economic characteristics, second was reproductive and maternal health history, and third part collected information on ANC use, place of delivery and use of skilled birth attendant during the last pregnancy. The fourth section collected information on knowledge of danger signs during pregnancy, labor and childbirths and after delivery, and fifth on having birth preparedness and complication readiness plan for the last pregnancy. Post-Natal Care practice after delivery was the last section.</sup></b><b><sup>The interviews were conducted at either participant’s home, or at health facility room depending on the preference of the participant. After finishing data collection verbal observation from the field was shared with the DMO, which will be followed by a full research report of the study after completion.</sup></b><b><br></b>
DOI: 10.15468/gueyzv
title: Macaronesian Muscidae (Diptera). II. The genus Limnophora Robineau-Desvoidy with description of a new Canarian endemic species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Michelsen, Verner (2021): Macaronesian Muscidae (Diptera). II. The genus Limnophora Robineau-Desvoidy with description of a new Canarian endemic species. Zootaxa 4952 (1): 101-127, DOI: https://doi.org/10.11646/zootaxa.4952.1.6
DOI: 10.15468/vsv3da
title: Macaronesian Muscidae (Diptera). III. First record of the genus Spilogona Schnabl based on two new endemic species from the Azores and Madeira

description: This dataset contains the digitized treatments in Plazi based on the original journal article Michelsen, Verner (2021): Macaronesian Muscidae (Diptera). III. First record of the genus Spilogona Schnabl based on two new endemic species from the Azores and Madeira. Zootaxa 4952 (1): 128-134, DOI: https://doi.org/10.11646/zootaxa.4952.1.7
DOI: 10.15468/9wm85j
title: Oxynoemacheilus phasicus, a new nemacheilid loach from the eastern Black Sea basin with some remarks on other Caucasian Oxynoemacheilus (Teleostei: Nemacheilidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Freyhof, Jörg, Kaya, Cüneyt, Epitashvili, Giorgi, Geiger, Matthias F. (2021): Oxynoemacheilus phasicus, a new nemacheilid loach from the eastern Black Sea basin with some remarks on other Caucasian Oxynoemacheilus (Teleostei: Nemacheilidae). Zootaxa 4952 (1): 135-151, DOI: https://doi.org/10.11646/zootaxa.4952.1.8
DOI: 10.5519/qd.8cmbfbd3
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (6 records)
DOI: 10.15468/8jwkga
title: Review of Uvarovistia (Orthoptera: Tettigoniidae; Tettigoniinae): genetic data indicate a new cryptic species, Uvarovistia munzurensis sp. n.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Uluar, Onur, Yahyaoğlu, Özgül, Çiplak, Battal (2021): Review of Uvarovistia (Orthoptera: Tettigoniidae; Tettigoniinae): genetic data indicate a new cryptic species, Uvarovistia munzurensis sp. n. Zootaxa 4952 (1): 152-168, DOI: https://doi.org/10.11646/zootaxa.4952.1.9
DOI: 10.6084/m9.figshare.14410310
title: Gut health Popular Press Data

description: Full article scrape in HMTL
DOI: 10.6084/m9.figshare.14410310.v2
title: Gut health pop press data html + Summary (PDF)

description: Article scrape in HMTL + PDF Summary of original n
DOI: 10.17632/94k52dg4hg.1
title: 150 GHz photoconductivity response of the multilayered structure with alternating SiO2 (2nm) and Ge (4nm) annealed at various temperatures

description: Semiconductor nanoparticles such as Germanium nanocrystals (Ge-nc) embedded in silicon dioxide (SiO2) are becoming a popular MOS candidate for high-speed and low-power-consuming memory devices. Strong charge retention (memory effects) is exhibited when Ge-nc is embedded in silicon dioxide layers (on Si substrate). At nanometer thicknesses, material properties are determined from quantum confinement. Multilayer structure consisting of alternating layers of SiO2 and Ge-nc were produced (one with no annealing and 6 with 1-hour duration annealing done 500° C and 700° C at increments of 25 °C under a dry flow of pure nitrogen). Stacked continuous amorphous SiO2/Ge-nc layers were deposited using the electron gun-assisted physical vapor deposition (PVD) technique. SiO2 layers are used as spacer layers (2nm). All 7 samples are used for obtaining free-space contactless time-resolved millimeter-wave conductance (TR-mmWC) responses at a fixed probe frequency of 150 GHz using variable pump fluences were fixed at 10.1 (data label as FullLaserPower), 2.7 (data labeled as 0.6 ND), and 1.5 (data labeled as 0.6ND) microJoules per square cm from a 532nm ultrashort pulse laser system (one data point at each fluence level for each sample). ND stands as an abbreviation for the neutral density filter size used during the data collection. We collected data that reflect changes in photo-emission induced transmission & reflection radiofrequency voltages and dark (no laser stimulus) dc responses of SiO2/Ge-nc transmitted through the sample as a function of laser fluence. Preliminarily, we find that the peak voltages in the RF transients increase with laser fluence for the sample that was annealed in a nitrogen environment at 700 deg. C. There is a general trend of increase of the rise time with annealing temperature when the laser is fired into the sample and, the same sample shows an appreciable growth of the Shockley-Read-Hall (SRH) decay constant changing from very small to about 7.5 microseconds when the laser fluences are 10 microJoules/cm2. These files are also ASCII-delimited comma-separated variable (.csv) files obtained after low noise amplification with gain ~34.5 and averaging about 5000 times. The free space DC voltages obtained for each sample run are 394 mV for all samples (sample-1 through sample 7) respectively. The DC voltages measured through each sample during the experiments were 244, 277, 163, 242, 267, 255, and 275 mV respectively. Column 1 represents the delay (seconds) and column 2 is the RF voltage (Volts) after amplification. The filename themselves provide the sample number (sample 1 is no annealing performed, Sample-2 annealed at 500 deg C, sample-3 annealed at 525 deg C, sample 4 annealed at 550 deg C, sample 5 annealed at 575 deg C, sample-6 annealed at 600 deg C, and sample-7 annealed at 700 deg C. All transient RF and DC data collected at probe frequency 150 GHz. A flag value 7.8462e+34 should be accounted for in data.
DOI: 10.6084/m9.figshare.14410379
title: Raw data

description: This data tables contain the mean trait values for leaf area, growth height, specific leaf area, leaf nitrogen concentration, seed mass and stem specific density derived from TRY database (TRY_final.txt). Additionally it contains the download links for the plant images from iNaturalist for the publication 'Deep Learning and Citizen Science Enable Automated Plant Trait Predictions from Photographs' (2021) (species_links.txt). The data can be processed as shown on: <br>https://github.com/ChrSchiller/cnn_traits/blob/main/code/03_join_GBIF_TRY.R<br>
DOI: 10.6084/m9.figshare.14399150
title: orthofisher: a broadly applicable tool for automated gene identification and retrieval

description: automated gene retrieval
DOI: 10.17632/fh9639t5sc.1
title: Electrophoretic mobility shift assays for with WhiB7
DOI: 10.5281/zenodo.4675670
title: Data from the Cantabrian Mountains used in 'Mechanisms of community assembly explaining beta-diversity patterns across biogeographic regions'

description: Data from the Cantabrian Mountains used in 'Mechanisms of community assembly explaining beta-diversity patterns across biogeographic regions'. The data refer to location, floristic composition and environmental variables of several 0.1-ha forest plots.<br> <br> There are four files: Spain_plants.txt: it contains floristic data, one row per stem. Spain_plots_general.csv: it contains date of survey, responsible people, coordinates and elevation. Spain_plots.txt: it contains bioclimatic variables. Spain_plots_soils_4_diciembre_2014.csv: it contains soil data. Only superficial soils within this file were used for the analyses in the publication.
DOI: 10.5281/zenodo.4675669
title: Data from the Cantabrian Mountains used in 'Mechanisms of community assembly explaining beta-diversity patterns across biogeographic regions'

description: Data from the Cantabrian Mountains used in 'Mechanisms of community assembly explaining beta-diversity patterns across biogeographic regions'. The data refer to location, floristic composition and environmental variables of several 0.1-ha forest plots.<br> <br> There are four files: Spain_plants.txt: it contains floristic data, one row per stem. Spain_plots_general.csv: it contains date of survey, responsible people, coordinates and elevation. Spain_plots.txt: it contains bioclimatic variables. Spain_plots_soils_4_diciembre_2014.csv: it contains soil data. Only superficial soils within this file were used for the analyses in the publication.
DOI: 10.17632/jph6vjvhbs.1
title: Abortive Transcription Gel for WhiB7 paper

description: Abortive transcription assays of Mycobacterium tuberculosis RNAP holoenzyme with transcription factors RbpA and CarD on the whiB7 promoter. Samples is a triplication experiment with and without the transcription factor WhiB7. Data analyzed with ImageJ.
DOI: 10.5281/zenodo.4685120
title: tzbozinek/economic-decision-making-ambiguity: Initial release

description: First release. Contains data and code needed to reproduce main results and figures of experiments of the manuscript "Ambiguous outcome magnitude in economic decision making with low and high monetary stakes." Authors: Tomislav D. Zbozinek, PhD* Caroline J. Charpentier, PhD* Song Qi, PhD* Dean Mobbs, PhD *Co-first authors: these authors contributed equally
DOI: 10.5281/zenodo.4685119
title: tzbozinek/economic-decision-making-ambiguity: Initial release

description: First release. Contains data and code needed to reproduce main results and figures of experiments of the manuscript "Ambiguous outcome magnitude in economic decision making with low and high monetary stakes." Authors: Tomislav D. Zbozinek, PhD* Caroline J. Charpentier, PhD* Song Qi, PhD* Dean Mobbs, PhD *Co-first authors: these authors contributed equally
DOI: 10.17632/fh9639t5sc.2
title: Electrophoretic mobility shift assays for with WhiB7

description: EMSA on the whiB7 promoter with Mycobacterium tuberculosis RNAP holoenzyme, CarD and RbpA with and without WhiB7.