cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15296804
title: Supplementary Datasets for PhD thesis of Maximillian R. W. Jones

description: Chapter 2

Supplementary Data 2.1 – Matrix of shared k-mer state rates between all pairs of accessions

Supplementary Data 2.2 – Loci for minimal SNP panel plus observed genotypes for 150 non-redundant accessions

Supplementary Data 2.3 – Details of 183 selected metabolites

Supplementary Data 2.4 – Scaffold from the Tsedey genome assembly by Cannarozzi et al. (2014) containing the A genome copy of the tef TT2 orthologue (Et_4A_032842).

Supplementary Data 2.5 – Scaffold from the Tsedey genome assembly Cannarozzi et al. (2014) containing the B genome copy of the tef TT2 orthologue (Et_4B_039404)

Supplementary Data 2.6 – Details of accessions used in the study

Supplementary Data 2.7 – Original field trial design and updated field trial design based on definition of redundant accession groups

Supplementary Data 2.8 – Raw field and grain phenotypic data

Supplementary Information 2 – Contains Supp. Tables and Supp. Note 2.1 (additional Information on genotyping of the core collection with a minimal SNP set)

 

Chapter 3

Supplementary Data 3.1 – Counts and TPMs for all IWGSC RefSeq v1.1 genes in semi-spatial spike RNA-seq samples

Supplementary Data 3.2 – Information on primers used in this chapter

Supplementary Data 3.3 – Gel electrophoresis analyses of additional MJ_GG24 cDNA samples

Supplementary Data 3.4 – Numbers of significant interactions from stepwise linear models of floral organ size parameters

Supplementary Data 3.5 – DESeq2 differential expression results for basal and central spike section comparisons

Supplementary Data 3.6 – L0 parts and L2 constructs used in this chapter

Supplementary Data 3.7 – Detailed methodology for MOF/mof1 organ size image processing using ImageJ/FIJI

Supplementary Data 3.8 – MJ_GG18 phenotyping

Supplementary Data 3.9 – MJ_GG19 phenotyping

Supplementary Data 3.10 – MOF/mof1 gross phenotyping

Supplementary Data 3.11 – Raw MOF/mof1 organ size data

Supplementary Data 3.12 – Raw MOF/mof1 floral organ images

 

Chapter 4

Supplementary Information 4 – contains Supp. Note 4.1 (tagmentation protocol)
DOI: 10.5281/zenodo.15296805
title: Supplementary Datasets for PhD thesis of Maximillian R. W. Jones

description: Chapter 2

Supplementary Data 2.1 – Matrix of shared k-mer state rates between all pairs of accessions

Supplementary Data 2.2 – Loci for minimal SNP panel plus observed genotypes for 150 non-redundant accessions

Supplementary Data 2.3 – Details of 183 selected metabolites

Supplementary Data 2.4 – Scaffold from the Tsedey genome assembly by Cannarozzi et al. (2014) containing the A genome copy of the tef TT2 orthologue (Et_4A_032842).

Supplementary Data 2.5 – Scaffold from the Tsedey genome assembly Cannarozzi et al. (2014) containing the B genome copy of the tef TT2 orthologue (Et_4B_039404)

Supplementary Data 2.6 – Details of accessions used in the study

Supplementary Data 2.7 – Original field trial design and updated field trial design based on definition of redundant accession groups

Supplementary Data 2.8 – Raw field and grain phenotypic data

Supplementary Information 2 – Contains Supp. Tables and Supp. Note 2.1 (additional Information on genotyping of the core collection with a minimal SNP set)

 

Chapter 3

Supplementary Data 3.1 – Counts and TPMs for all IWGSC RefSeq v1.1 genes in semi-spatial spike RNA-seq samples

Supplementary Data 3.2 – Information on primers used in this chapter

Supplementary Data 3.3 – Gel electrophoresis analyses of additional MJ_GG24 cDNA samples

Supplementary Data 3.4 – Numbers of significant interactions from stepwise linear models of floral organ size parameters

Supplementary Data 3.5 – DESeq2 differential expression results for basal and central spike section comparisons

Supplementary Data 3.6 – L0 parts and L2 constructs used in this chapter

Supplementary Data 3.7 – Detailed methodology for MOF/mof1 organ size image processing using ImageJ/FIJI

Supplementary Data 3.8 – MJ_GG18 phenotyping

Supplementary Data 3.9 – MJ_GG19 phenotyping

Supplementary Data 3.10 – MOF/mof1 gross phenotyping

Supplementary Data 3.11 – Raw MOF/mof1 organ size data

Supplementary Data 3.12 – Raw MOF/mof1 floral organ images

 

Chapter 4

Supplementary Information 4 – contains Supp. Note 4.1 (tagmentation protocol)
DOI: 10.57702/6o97ozap
title: ImageNet-2k

description: The dataset used in the paper is the ImageNet-2k dataset, a large dataset for image classification.
DOI: 10.13145/bacdive168198.20250331.9.3
title: Sneathiella sedimenti Lee et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168198.20251217.10
title: Sneathiella sedimenti Lee et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168199.20250331.9.3
title: Muricauda aurea Zhao et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168199.20251217.10
title: Muricauda aurea Zhao et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/ohxe926i
title: Option Contract Price Data

description: The dataset used in this study is a collection of option contract price data, containing historical end-of-day option chains for each stock.
DOI: 10.13145/bacdive168200.20250331.9.3
title: Muricauda profundi Zhao et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168200.20251217.10
title: Muricauda profundi Zhao et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168201.20250331.9.3
title: Massilia soli Baek et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.18150/baawzu
title: Differential cross section for the dp breakup reaction at 190MeV/nucleon

description: The differential cross section for the 1H(d,pp)n breakup reaction at deuteron beam energy of 380 MeV has been determined with high precision for 189 angular configurations of outgoing protons. The data have been measured by the international WASA-at-COSY Collaboration using the WASA detector at COSY in Forschungszentrum Juelich (Germany). The data cover polar angles of two protons in the exit channel, theta1 and theta2, between 5o and 15o and their relative azimuthal angle phi12 between 20o and 180o.
DOI: 10.57702/odkrx60z
title: Twomax function

description: The dataset used in the paper is the Twomax function, a bimodal function of unitation.
DOI: 10.13145/bacdive168201.20251217.10
title: Massilia soli Baek et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168202.20250331.9.3
title: Haloterrigena salifodinae Chen et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/dyrndcuw
title: Student Submission Table

description: The STUDENTSUBMISSION table holds the StudentID, QueryID, SubmittedAnswer (the SQL query submitted by that student), a flag indicating whether the SubmittedAnswer IsCorrect, a Remark field that describes whether the submission was correct, partially correct, uninterpretable, and the number of Points earned.
DOI: 10.13145/bacdive168202.20251217.10
title: Haloterrigena salifodinae Chen et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168203.20250331.9.3
title: Rhodothermus bifroesti Bergsten et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168203.20251217.10
title: Rhodothermus bifroesti Bergsten et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/hwzs6o8r
title: JHU-ISI Gesture and Skill Assessment Working Set

description: The JHU-ISI Gesture and Skill Assessment Working Set (JIGSAWS) dataset is used for surgical motion analysis and skill assessment.
DOI: 10.13145/bacdive168204.20240510.9
title: Streptococcus caledonicus Foster et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168204.20251217.10
title: Streptococcus caledonicus Foster et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168205.20250331.9.3
title: Arenimonas fontis Zayulina et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168205.20251217.10
title: Arenimonas fontis Zayulina et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/vf216buf
title: Video-to-Video Synthesis

description: Video-to-video translation aims to generate video frames of a target domain from an input video. Despite its usefulness, the existing networks require enormous computations, necessitating their model compression for wide use.
DOI: 10.13145/bacdive168206.20250331.9.3
title: Weissella sagaensis Li et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168206.20251217.10
title: Weissella sagaensis Li et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168207.20250331.9.3
title: Rickettsia japonica Uchida et al. 1992

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168207.20251217.10
title: Rickettsia japonica Uchida et al. 1992

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168208.20250331.9.3
title: Emticicia aquatilis Ngo et al. 2017

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/6lt7bgqm
title: MR-NIRP

description: Combination of two publicly available datasets, MR-NIRP (Indoor) and MR-NIRP (Driving) for training a Convolution Attention Network (CAN) architecture to regress photoplethysmography (PPG) signal from a sequence of NIR frames.
DOI: 10.13145/bacdive168208.20251217.10
title: Emticicia aquatilis Ngo et al. 2017

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168209.20240510.9
title: Ornithinimicrobium algicola Ramaprasad et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168209.20251217.10
title: Ornithinimicrobium algicola Ramaprasad et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/x6zsx4po
title: Simulated dataset

description: The dataset used in this paper is a simulated dataset with 200 variables and 50 observations. The variables are generated from a multivariate normal distribution with a covariance matrix that has different correlation structures for active and inactive variables.
DOI: 10.13145/bacdive168210.20240510.9
title: Paenibacillus cellulositrophicus Akaracharanya et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168210.20251217.10
title: Paenibacillus cellulositrophicus Akaracharanya et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168211.20250331.9.3
title: Streptomyces puniciscabiei Park et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168211.20251217.10
title: Streptomyces puniciscabiei Park et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/h8xhnwd1
title: Erpbero

description: The dataset Erpbero contains 2,591 images.
DOI: 10.13145/bacdive168212.20250331.9.3
title: Mesoplasma tabanidae Tully et al. 1994

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168212.20251217.10
title: Mesoplasma tabanidae Tully et al. 1994

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/u9lb3dkj
title: Amazon Book Dataset

description: Amazon book data set contains book reviews and metadata from Amazon. Following previous work, we regard reviews as positive samples and randomly select products not rated by a specific user as negative samples, so as to generate the CTR prediction data set.
DOI: 10.13145/bacdive168213.20250331.9.3
title: Spirosoma aerolatum Kim et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168213.20251217.10
title: Spirosoma aerolatum Kim et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive168214.20250331.9.3
title: Nakamurella leprariae An et al. 2022

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.b8rp7t
title: Occurrence Download

description: A dataset containing 5880 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Antarctica, Asia, Oceania, Europe, North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pomacea canaliculata (Lamarck, 1822)"
 ]
}

 The dataset includes 5880 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006581-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhrja9
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is China",
 "Country is Hong Kong"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mikania micrantha Kunth",
 "Year 2011-2021"
 ]
}

 The dataset includes 145 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263438-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8zz7n
title: Occurrence Download

description: A dataset containing 1167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Balaenidae"
 ]
}

 The dataset includes 1167 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226171-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6fyk8
title: Occurrence Download

description: A dataset containing 201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Anthocerotophyta"
 ]
}

 The dataset includes 201 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0266103-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9l3nae
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pavetta teitana K.Schum."
 ]
}

 The dataset includes 38 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012157-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecckn9
title: Occurrence Download

description: A dataset containing 73095 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 6f3ccc65-0a54-4e65-ae7e-13b92d618e7c",
 "Year 1000-1950"
 ]
}

 The dataset includes 73095 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0269250-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nb4y7
title: Occurrence Download

description: A dataset containing 50113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brassica napus L."
 ]
}

 The dataset includes 50113 records from 526 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049840-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4nnua
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zoothera dauma major",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074711-220831081235567/datasets/export for details.
DOI: 10.15468/dl.msgk5n
title: Occurrence Download

description: A dataset containing 1697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ficus natalensis Hochst."
 ]
}

 The dataset includes 1697 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0122549-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.377wkv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scolecenchelys nicholsarum (Waite, 1904)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074702-220831081235567/datasets/export for details.
DOI: 10.15468/dl.p7kurg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine potentillifolia H.Lév."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043616-220831081235567/datasets/export for details.
DOI: 10.15468/dl.98xufw
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemitriakis falcata Compagno & Stevens, 1993"
 ]
}

 The dataset includes 98 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029997-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmkmx4
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actaea savignii (H.Milne Edwards, 1834)"
 ]
}

 The dataset includes 140 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111779-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v9h3wb
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aubrieta integrifolia Fisch. & C.A.Mey."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043612-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s3tgka
title: Occurrence Download

description: A dataset containing 7022 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-53.86422 -35.30734,15.4367 -27.75321,17.0789 6.40459,-2.62752 14.94404,-17.0789 21.84128,-77.51193 34.9789,-99.84587 32.35138,-107.07156 20.52752,-75.54128 -18.88532,-53.86422 -35.30734))",
 "TaxonKey is Ruppia maritima L."
 ]
}

 The dataset includes 7022 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029991-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrew7e
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amazona imperialis Richmond, 1899"
 ]
}

 The dataset includes 308 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111786-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmppa5
title: Occurrence Download

description: A dataset containing 258 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinobatos sainsburyi Last, 2004"
 ]
}

 The dataset includes 258 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029993-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.