cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3842880
title: Yorku.Grassland.Sep20-2016.csv

description: <b>YORK UNIVERSITY GRASSLAND META-DATA</b><b><br></b><b>Data Column Headers and Descriptions:<br></b><b><br></b><b>Quadrats: </b>quadrats measuring 1 square meter were placed in the grassland according to the pre-determined randomized process (as described below).<br><b>Number of Plants</b>: the number of plants in each quadrat was visually assessed, estimated, and recorded. Categorical variable.<br><b>Number of Species</b>: the number of plant species in each quadrat was visually assessed, estimated, and recorded. Categorical variable.<br><b>Percentage Grass Cover:</b> the percentage of the quadrat that was occupied by grass was visually assessed, estimated, and recorded. Continuous variable.<br><b>Percentage Plant Cover</b>: the percentage of the quadrat that was occupied by plant was visually assessed, estimated, and recorded. Continuous variable.<br><b>Percentage Bare Ground:</b> the percentage of the quadrat that was occupied by bare ground was visually assessed, estimated, and recorded. Continuous variable.<br><b>Additional Information:</b><b><br></b><b>Hypothesis and Predictions: </b>It was hypothesized that in the grassland there is more grass relative to other plant species. We predict that other grasslands at York University will show a similar distribution of grass and other plant species.<br><b>Time Data Was Collected</b>: Tuesday, September 20, 2016. 3:15-3:45 EST.<br><b>Location of Data</b>: Grassland at York University, near York Boulevard. Latitude and longitude: 43.775, -79.505.<br><b>Weather Conditions: </b>24-25 degrees Celsius, clear, sunny, dry conditions.<br><b>Survey Method</b>: Quadrats measuring 1 square meter were randomly placed in the grassland. Randomization was achieved using the random number generator from www.random.org. One random number was generated from 0 to 359; this number determined the angle at which we walked from the previous quadrat to the next sampling site. A second random number was generated from 1 to 25; this number determined the number of steps taken from the previous quadrat to the next sampling site. 25 quadrats were placed using this method.<br><br> <br>
DOI: 10.6084/m9.figshare.3842880.v1
title: Yorku.Grassland.Sep20-2016.csv

description: <b>YORK UNIVERSITY GRASSLAND META-DATA</b><b><br></b><b>Data Column Headers and Descriptions:<br></b><b><br></b><b>Quadrats: </b>quadrats measuring 1 square meter were placed in the grassland according to the pre-determined randomized process (as described below).<br><b>Number of Plants</b>: the number of plants in each quadrat was visually assessed, estimated, and recorded. Categorical variable.<br><b>Number of Species</b>: the number of plant species in each quadrat was visually assessed, estimated, and recorded. Categorical variable.<br><b>Percentage Grass Cover:</b> the percentage of the quadrat that was occupied by grass was visually assessed, estimated, and recorded. Continuous variable.<br><b>Percentage Plant Cover</b>: the percentage of the quadrat that was occupied by plant was visually assessed, estimated, and recorded. Continuous variable.<br><b>Percentage Bare Ground:</b> the percentage of the quadrat that was occupied by bare ground was visually assessed, estimated, and recorded. Continuous variable.<br><b>Additional Information:</b><b><br></b><b>Hypothesis and Predictions: </b>It was hypothesized that in the grassland there is more grass relative to other plant species. We predict that other grasslands at York University will show a similar distribution of grass and other plant species.<br><b>Time Data Was Collected</b>: Tuesday, September 20, 2016. 3:15-3:45 EST.<br><b>Location of Data</b>: Grassland at York University, near York Boulevard. Latitude and longitude: 43.775, -79.505.<br><b>Weather Conditions: </b>24-25 degrees Celsius, clear, sunny, dry conditions.<br><b>Survey Method</b>: Quadrats measuring 1 square meter were randomly placed in the grassland. Randomization was achieved using the random number generator from www.random.org. One random number was generated from 0 to 359; this number determined the angle at which we walked from the previous quadrat to the next sampling site. A second random number was generated from 1 to 25; this number determined the number of steps taken from the previous quadrat to the next sampling site. 25 quadrats were placed using this method.<br><br> <br>
DOI: 10.7910/dvn/v1rjpf/i9w3v1
title: mea20150616_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/4xijwe
title: mea20150724_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/hh0fh8
title: mea20160216_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/eddomr
title: mea20150320_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3842871
title: Abundance and Cover of Plant and Grass Vegetation in a Grassland at York University

description: The study explores the diversity of plant species in a grassland. Hypothesis: In a grassland, the distribution of specific plant species and grasses are random. Predictions: The number of plants species in across quadrats should vary. The number of individual plants should also vary across quadrats. We should also see that the areas occupied by grass and vegetation should vary across quadrats. Methods:- 25 quadrats were placed randomly at a grassland near Keele and Steeles at York University, Keele Campus from 3:00 to 4:30 on sunny and warm conditions. Each quadrat has an area of 1m<sup>2</sup> and hence, the total sum of the areas of all the quadrats is 25m<sup>2</sup>.- In each quadrat, the number of individual plants was counted as well as the number of unique plant species. The total cover of vegetation and grass was also approximated for each quadrat.- The data was uploaded to figshare.Meta-data: Abundance of plants: defined as the number of individual plants counted per quadrat. The data is continuous and quantitative. Number of species: defined as the number of unique species seen per quadrat. The data is continuous and quantitative. Total cover of plants: proportion of the area of the quadrat that is covered by plants. The data is continuous and quantitative. Total cover of grass: proportion of the area of the quadrat that is covered by grass. The data is continuous and quantitative.
DOI: 10.7910/dvn/v1rjpf/y34eoj
title: mea20160422_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/gpsusf
title: mea20160514_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3842871.v2
title: Abundance and Cover of Plant and Grass Vegetation in a Grassland at York University

description: The study explores the diversity of plant species in a grassland. Hypothesis: In a grassland, the distribution of specific plant species and grasses are random. Predictions: The number of plants species in across quadrats should vary. The number of individual plants should also vary across quadrats. We should also see that the areas occupied by grass and vegetation should vary across quadrats. Methods:- 25 quadrats were placed randomly at a grassland near Keele and Steeles at York University, Keele Campus from 3:00 to 4:30 on sunny and warm conditions. Each quadrat has an area of 1m<sup>2</sup> and hence, the total sum of the areas of all the quadrats is 25m<sup>2</sup>.- In each quadrat, the number of individual plants was counted as well as the number of unique plant species. The total cover of vegetation and grass was also approximated for each quadrat.- The data was uploaded to figshare.Meta-data: Abundance of plants: defined as the number of individual plants counted per quadrat. The data is continuous and quantitative. Number of species: defined as the number of unique species seen per quadrat. The data is continuous and quantitative. Total cover of plants: proportion of the area of the quadrat that is covered by plants. The data is continuous and quantitative. Total cover of grass: proportion of the area of the quadrat that is covered by grass. The data is continuous and quantitative.
DOI: 10.6084/m9.figshare.3842871.v1
title: YorkU.grassland.Sept20-2016.csv

description: The study explores the diversity of plant species in a grassland. Hypothesis: In a grassland, the distribution of specific plant species and grasses are random. Predictions: The number of plants species in across quadrats should vary. The number of individual plants should also vary across quadrats. We should also see that the areas occupied by grass and vegetation should vary across quadrats. Methods:- 25 quadrats were placed randomly at a grassland near Keele and Steeles at York University, Keele Campus from 3:00 to 4:30 on sunny and warm conditions. Each quadrat has an area of 1m<sup>2</sup> and hence, the total sum of the areas of all the quadrats is 25m<sup>2</sup>.- In each quadrat, the number of individual plants was counted as well as the number of unique plant species. The total cover of vegetation and grass was also approximated for each quadrat.- The data was uploaded to figshare.Meta-data: Abundance of plants: defined as the number of individual plants counted per quadrat. The data is continuous and quantitative. Number of species: defined as the number of unique species seen per quadrat. The data is continuous and quantitative. Total cover of plants: proportion of the area of the quadrat that is covered by plants. The data is continuous and quantitative. Total cover of grass: proportion of the area of the quadrat that is covered by grass. The data is continuous and quantitative.
DOI: 10.7910/dvn/v1rjpf/cdb1h7
title: mea20150122_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/cuu4ji
title: mea20161018_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3842859
title: Circumference, Canopy Coverage and Distance Between Trees On York University Campus Woodlot

description: Methods: The transect was 25 meters long and placed in a straight line through the middle of a woodlot. The circumference of the tree was measured at chest height using measuring tape and only on adult trees; ones that were at least twice normal human height. The distance to the closest adult tree was also measured at chest height on both trees. A "sapling" was defined as a tree of about 6 feet tall or shorter, but had to be of the same species as the adult tree that was distanced from it. If no sapling of the same species was found within 4 meters of the adult tree then "none" describes no sapling in the vicinity. Canopy cover percentage was done by looking up from the base of the tree and estimating how much of the foliage and branches were blocking the sky.
DOI: 10.6084/m9.figshare.3842859.v1
title: Circumference, Canopy Coverage and Distance Between Trees On York University Campus Woodlot

description: Methods: The transect was 25 meters long and placed in a straight line through the middle of a woodlot. The circumference of the tree was measured at chest height using measuring tape and only on adult trees; ones that were at least twice normal human height. The distance to the closest adult tree was also measured at chest height on both trees. A "sapling" was defined as a tree of about 6 feet tall or shorter, but had to be of the same species as the adult tree that was distanced from it. If no sapling of the same species was found within 4 meters of the adult tree then "none" describes no sapling in the vicinity. Canopy cover percentage was done by looking up from the base of the tree and estimating how much of the foliage and branches were blocking the sky.
DOI: 10.7910/dvn/v1rjpf/h3y22x
title: mea20160131_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/joulvy
title: mea20160420_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/wzg5x6
title: mea20150213_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/3xcfm7
title: mea20150512_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/8hv9o5
title: mea20151228_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/k176qf
title: mea20150513_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/16kvmi
title: mea20150408_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/ipngir
title: mea20160713_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/fac31k
title: mea20150424_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/neefdy
title: mea20160312_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/0f6wdg
title: mea20150522_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3842835
title: Annotated bulk-population RNA-seq data on a mesoderm differentiation dataset

description: Bulk-population RNA-seq data as described in Loh and Chen et al., Cell (http://www.cell.com/cell/abstract/S0092-8674(16)30740-1). Each row in this spreadsheet, corresponding to one gene, has been annotated with whether it is associated with the GO code GO:0009986 ("cell surface"). For each pair of cell types that we compare, each row also has two columns ("DE [celltype1]-[celltype2]" and "sLFC [celltype1]-[celltype2]"), which respectively denote whether that gene is differentially expressed in the two cell types and the shrunken log fold change between the two cell types, as calculated by DESeq2 (Love, Huber, Anders (2014)). If the sLFC is negative, it means that the expression of that gene in [celltype1] is lower than in [celltype2]. For brevity, only genes that are differentially expressed in at least one condition have been included.<br>
DOI: 10.7910/dvn/v1rjpf/2xfwbj
title: mea20160227_03.txt.gz

description: :unav
DOI: 10.17608/k6.auckland.3842793
title: 'DOM' Version 0.2

description: This report describes changes in version 0.2 of the ‘DOM’ package for R. Version 0.1 of ‘DOM’ allowed HTML content to be added to a web page (or removed or modified); version 0.2 adds the ability to append SVG content to a web page.
DOI: 10.7910/dvn/v1rjpf/f1euaz
title: mea20161127_03.txt.gz

description: :unav
DOI: 10.17608/k6.auckland.3842793.v1
title: 'DOM' Version 0.2

description: This report describes changes in version 0.2 of the ‘DOM’ package for R. Version 0.1 of ‘DOM’ allowed HTML content to be added to a web page (or removed or modified); version 0.2 adds the ability to append SVG content to a web page.
DOI: 10.17608/k6.auckland.3842793.v2
title: 'DOM' Version 0.2

description: This report describes changes in version 0.2 of the ‘DOM’ package for R. Version 0.1 of ‘DOM’ allowed HTML content to be added to a web page (or removed or modified); version 0.2 adds the ability to append SVG content to a web page.
DOI: 10.7910/dvn/v1rjpf/2zbjay
title: mea20150306_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3842769
title: Clinical and Economic Impact of a Digital, Remotely-Delivered Intensive Behavioral Counseling Program on Medicare Beneficiaries at risk for Diabetes and Cardiovascular Disease

description: Sample population data set for the manuscript "Clinical and Economic Impact of a Digital, Remotely-Delivered Intensive Behavioral Counseling Program on Medicare Beneficiaries at risk for Diabetes and Cardiovascular Disease" <b><br></b> <b><br></b> <b><br></b>
DOI: 10.7910/dvn/v1rjpf/yaorol
title: mea20150822_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3842646
title: Salsbury Group 2016 Research Presentation

description: Annual research overview; sort of big picture
DOI: 10.7910/dvn/v1rjpf/4zge31
title: mea20161202_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3842646.v1
title: Salsbury Group 2016 Research Presentation

description: Annual research overview; sort of big picture
DOI: 10.6084/m9.figshare.3842769.v1
title: Data set for PONE-D-16-12461R1.sas7bdat

description: Sample population data set for the manuscript "Clinical and Economic Impact of a Digital, Remotely-Delivered Intensive Behavioral Counseling Program on Medicare Beneficiaries at risk for Diabetes and Cardiovascular Disease" <b><br></b> <b><br></b> <b><br></b>
DOI: 10.7910/dvn/v1rjpf/i87khq
title: mea20151218_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/scb0s8
title: mea20161122_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/t74ord
title: mea20160829_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/3r2hua
title: mea20150128_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3841308
title: Fluorescence spectrometer raw data

description: Here are the raw spectra of Fig. 4e as generated by Perkin-Elmer LS 55 spectrofluorimeter.
DOI: 10.6084/m9.figshare.3841305
title: Relationship between eye colour and use of corrective lenses for individuals in an introductory ecology lab at York University

description: This study examines the relationship between eye colour and the use of corrective lenses for 21 members of an undergraduate ecology lab at York University.<br>Methods:<br>-21 individuals from a York University undergraduate ecology lab were surveyed-Willing participants were asked their eye colour and whether or not they ever wear corrective lenses-Data was recorded in an excel sheet and uploaded to Figshare<br>Hypothesis:<br>There will be no correlation between eye colour and the use of corrective lenses.<br>Prediction:<br>There should be no correlation between eye colour of the participants and whether or not they use corrective lenses as iris colour does not affect lens shape in the human eye. Therefore whether or not an individual has light or dark eyes should have no bearing on whether or not their lenses are misshapen, leading to the need for corrective synthetic lenses.<br>Metadata:-Eye colour = participants were given a choice of eye colours of blue, green, brown, black, and hazel. Data is qualitative and categorical.-Corrective lenses = defined as contact lenses or eye glasses. Data is qualitative and categorical. Yes indicates the participant wears corrective lenses at any time, no indicates they never wear corrective lenses.
DOI: 10.7910/dvn/v1rjpf/bemmzy
title: mea20160711_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3841305.v1
title: Relationship between eye colour and use of corrective lenses for individuals in an introductory ecology lab at York University

description: This study examines the relationship between eye colour and the use of corrective lenses for 21 members of an undergraduate ecology lab at York University.<br>Methods:<br>-21 individuals from a York University undergraduate ecology lab were surveyed-Willing participants were asked their eye colour and whether or not they ever wear corrective lenses-Data was recorded in an excel sheet and uploaded to Figshare<br>Hypothesis:<br>There will be no correlation between eye colour and the use of corrective lenses.<br>Prediction:<br>There should be no correlation between eye colour of the participants and whether or not they use corrective lenses as iris colour does not affect lens shape in the human eye. Therefore whether or not an individual has light or dark eyes should have no bearing on whether or not their lenses are misshapen, leading to the need for corrective synthetic lenses.<br>Metadata:-Eye colour = participants were given a choice of eye colours of blue, green, brown, black, and hazel. Data is qualitative and categorical.-Corrective lenses = defined as contact lenses or eye glasses. Data is qualitative and categorical. Yes indicates the participant wears corrective lenses at any time, no indicates they never wear corrective lenses.
DOI: 10.7910/dvn/v1rjpf/xj8fdk
title: mea20160403_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3841302
title: FACS raw data Fig. 6

description: Here are the raw data of Fig. 6 as generated by the S3 Biorad flow cytometer using the ProSort software. The ROIs should be used according to the number of the experiment.
DOI: 10.6084/m9.figshare.3841302.v1
title: FACS raw data Fig. 6

description: Here are the raw data of Fig. 6 as generated by the S3 Biorad flow cytometer using the ProSort software. The ROIs should be used according to the number of the experiment.
DOI: 10.7910/dvn/v1rjpf/ght1ry
title: mea20160909_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/id0pae
title: mea20150205_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3841173
title: Schemes of Xenopus laevis tadpoles

description: Schemes of <i>Xenopus laevis</i> tadpoles at developmental stage 50 and 54 in 'Individual images of Xenopus laevis tadpoles' (see references). These drawings are low detail pictograms and lack characteristics for identifying a particular developmental stage; they are therefore best used for illustrations that require <i>Xenopus </i>tadpole icons. The file includes several versions of each sketch, with various amounts of detail.<br><br>Edit 24 January 2017: Now there are additional schemes based on differently staged animals.<br>
DOI: 10.7910/dvn/v1rjpf/tyiq2g
title: mea20150105_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3841170
title: Growth rate controls mRNA turnover in steady and non-steady states

description: Gene expression has been investigated in relation with growth rate in the yeast <i>Saccharomyces cerevisiae</i>, following different experimental strategies. The expression of some specific gene functional categories increases or decreases with growth rate. Our recently published results have unveiled that these changes in mRNA concentration with growth depend on the relative alteration of mRNA synthesis and decay, and that, in addition to this gene-specific transcriptomic signature of growth, global mRNA turnover increases with growth rate. We discuss here these results in relation with other previous and concurrent publications, and we add new evidence which indicates that growth rate controls mRNA turnover even under non-steady-state conditions.
DOI: 10.6084/m9.figshare.3841167
title: Hyperactivity in motor response inhibition networks in unmedicated children with attention deficit-hyperactivity disorder

description: <b>Objectives:</b> Hypo/reduced activity in motor response inhibition (RI) cerebral networks was recently proposed as a promising specific neurobiological marker of attention deficit-hyperactivity disorder (ADHD). Before adopting such a pattern as a key diagnosis tool, we aim to replicate in an independent study the mechanisms underlying reduced RI-related activity in ADHD, after controlling for potentially confounding effects. <b>Methods:</b> In this fMRI study, we investigated the neural networks mediating successful and failed motor RI in children with ADHD and typically developing children (TDC) using the stop-signal task (SST) paradigm. <b>Results:</b> In contrast to hypofrontality predictions, children with ADHD exhibit increased neural activity during successful response inhibition in an RI-related brain network encompassing the indirect and/or hyperdirect pathways between the basal ganglia and cortex. Voxel-based morphometry analyses have further evidenced reduced grey matter volume in the left caudate in children with ADHD, which paralleled higher functional responses. Finally, connectivity analyses disclosed tighter coupling between a set of cortical regions and the right caudate as well as the right IFG, networks involved in successful RI. <b>Conclusions:</b> Hypo/reduced activity in RI cerebral networks in children with ADHD cannot at this time be considered as a systematic biomarker for ADHD.
DOI: 10.7910/dvn/v1rjpf/l45cmd
title: mea20150330_03.txt.gz

description: :unav