cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc1ngbbs
title: CCDC 1533115: Experimental Crystal Structure Determination

description: Related Article: Endale Mulugeta, Qing He, Divya Sareen, Seong-Jin Hong, Ju Hyun Oh, Vincent M. Lynch, Jonathan L. Sessler, Sung Kuk Kim, Chang-Hee Lee|2017|Chem Cell mPress|3|1008|doi:10.1016/j.chempr.2017.10.007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1ns4dz
title: CCDC 1542541: Experimental Crystal Structure Determination

description: Related Article: Fu-Li Wang, Xiao-Yang Dong, Jin-Shun Lin, Yang Zeng, Guan-Yuan Jiao, Qiang-Shuai Gu, Xian-Qi Guo, Can-Liang Ma, Xin-Yuan Liu|2017|Chem Cell mPress|3|979|doi:10.1016/j.chempr.2017.10.008
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5255/ukda-sn-7997-5
title: Employer Skills Survey, 2015: Special Licence Access
DOI: 10.5281/zenodo.1101182
title: Dnamod: Database

description: The backing SQLite database for DNAmod: the DNA modification database.
DOI: 10.15129/b62281dc-08cf-4138-b6cc-db32beb200ab
title: Characterisation of microporous stent surface topography and drug release profile

description: The overall aim of the work was to mathematically model drug release from microporous stent surfaces.  A series of models were developed for different conditions.  Images of the microporous stent surfaces were obtained using Atomic Force Microscopy (AFM).  These images were used to inform the model development.   The model drug release predictions were then compared against stent drug release profiles that were determined experimentally.

Microporous stent surface images were obtained using an Atomic Force Microscope (MFP 3D, Asylum Research, CA, USA).  Scans were performed in intermittent contact mode in air, at a scan size of 5 and 20 micrometers.  A rectangular silicon probe with an aluminium coating was used (160 TS, Olympus). The spring constant of this cantilever type was 26 N/m.  Images were collected from 4 randomly selected points from three separate Yukon Choice stents (uncoated).  For each location, an ortho projection and a 3D image were produced.  The images produced are included in this dataset as separate JPEG files (48 in total).

Drug release data were generated as follows.  A single Yukon Choice stent was coated with rapamycin solution (10mg/ml in ethanol)  using the Translumina dose-adjustable stent coating machine, according to manufacturer's instructions.  The coated stent was then immersed in release medium (phosphate buffered saline:ethanol (90:10)) and the rapamycin release from the surface quantified over time using UV-spectroscopy (UV 2401 PC, Shimadzu Corporation).  Raw data and processed data on drug release are included in this dataset within an MS Excel file, which also contains further experimental details.
DOI: 10.5281/zenodo.1100976
title: Correcting For Population Stratification Reduces False Positive And False Negative Results In Joint Analyses Of Host And Pathogen Genomes [G2G-Simulator: Simulated Dataset]

description: Data associated with the paper 'Correcting for population stratification reduces false positive and false negative results in joint analyses of host and pathogen genomes'.

It contains the raw simulated data from the 'G2G-Simulator' program. 

Those data need to be loaded in a R environment .

You can reproduce plots present in the paper by parsing the R object using the script 'parse_paper_data.R' present in the G2G-Simulator GitHub repository (https://github.com/onaret/G2G-Simulator/paper/parse_paper_dataset.R).
DOI: 10.5517/ccdc.csd.cc1pq2j0
title: CCDC 1570352: Experimental Crystal Structure Determination

description: Related Article: Junya Shirai, Yoshihide Tomata, Mitsunori Kono, Atsuko Ochida, Yoshiyuki Fukase, Ayumu Sato, Shinichi Masada, Tetsuji Kawamoto, Kazuko Yonemori, Ryoukichi Koyama, Hideyuki Nakagawa, Masaharu Nakayama, Keiko Uga, Akira Shibata, Keiko Koga, Toshitake Okui, Mikio Shirasaki, Robert Skene, BiChing Sang, Isaac Hoffman, Wes Lane, Yasushi Fujitani, Masashi Yamasaki, Satoshi Yamamoto|2018|Bioorg.Med.Chem.|26|483|doi:10.1016/j.bmc.2017.12.006
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.1100977
title: Correcting For Population Stratification Reduces False Positive And False Negative Results In Joint Analyses Of Host And Pathogen Genomes [G2G-Simulator: Simulated Dataset]

description: Data associated with the paper 'Correcting for population stratification reduces false positive and false negative results in joint analyses of host and pathogen genomes'.

It contains the raw simulated data from the 'G2G-Simulator' program. 

Those data need to be loaded in a R environment .

You can reproduce plots present in the paper by parsing the R object using the script 'parse_paper_data.R' present in the G2G-Simulator GitHub repository (https://github.com/onaret/G2G-Simulator/paper/parse_paper_dataset.R).
DOI: 10.5517/ccdc.csd.cc1q7g8p
title: CCDC 1586092: Experimental Crystal Structure Determination

description: Related Article: Hua Gong, David S. Weinstein, Zhonghui Lu, James J.-W. Duan, Sylwia Stachura, Lauren Haque, Ananta Karmakar, Hemalatha Hemagiri, Dhanya Kumar Raut, Arun Kumar Gupta, Javed Khan, Dan Camac, John S. Sack, Andrew Pudzianowski, Dauh-Rurng Wu, Melissa Yarde, Ding-Ren Shen, Virna Borowski, Jenny H. Xie, Huadong Sun, Celia D'Arienzo, Marta Dabros, Michael A. Galella, Faye Wang, Carolyn A. Weigelt, Qihong Zhao, William Foster, John E. Somerville, Luisa M. Salter-Cid, Joel C. Barrish, Percy H. Carter, T.G. Murali Dhar|2018|Bioorg.Med.Chem.Lett.|28|85|doi:10.1016/j.bmcl.2017.12.006
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.b4v22/1
title: Falcon et al 2018 Giant tortoise activity and thermoregulation

description: Data used for the analysis done for the article. It is divided in 1) patterns of activity in relation to environmental temperature and 2) patterns of body temperature in relation to environmental temperatures.
DOI: 10.5517/ccdc.csd.cc1q7g9q
title: CCDC 1586093: Experimental Crystal Structure Determination

description: Related Article: Hua Gong, David S. Weinstein, Zhonghui Lu, James J.-W. Duan, Sylwia Stachura, Lauren Haque, Ananta Karmakar, Hemalatha Hemagiri, Dhanya Kumar Raut, Arun Kumar Gupta, Javed Khan, Dan Camac, John S. Sack, Andrew Pudzianowski, Dauh-Rurng Wu, Melissa Yarde, Ding-Ren Shen, Virna Borowski, Jenny H. Xie, Huadong Sun, Celia D'Arienzo, Marta Dabros, Michael A. Galella, Faye Wang, Carolyn A. Weigelt, Qihong Zhao, William Foster, John E. Somerville, Luisa M. Salter-Cid, Joel C. Barrish, Percy H. Carter, T.G. Murali Dhar|2018|Bioorg.Med.Chem.Lett.|28|85|doi:10.1016/j.bmcl.2017.12.006
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q7gbr
title: CCDC 1586094: Experimental Crystal Structure Determination

description: Related Article: Hua Gong, David S. Weinstein, Zhonghui Lu, James J.-W. Duan, Sylwia Stachura, Lauren Haque, Ananta Karmakar, Hemalatha Hemagiri, Dhanya Kumar Raut, Arun Kumar Gupta, Javed Khan, Dan Camac, John S. Sack, Andrew Pudzianowski, Dauh-Rurng Wu, Melissa Yarde, Ding-Ren Shen, Virna Borowski, Jenny H. Xie, Huadong Sun, Celia D'Arienzo, Marta Dabros, Michael A. Galella, Faye Wang, Carolyn A. Weigelt, Qihong Zhao, William Foster, John E. Somerville, Luisa M. Salter-Cid, Joel C. Barrish, Percy H. Carter, T.G. Murali Dhar|2018|Bioorg.Med.Chem.Lett.|28|85|doi:10.1016/j.bmcl.2017.12.006
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/wgd83v3ntb.1
title: Murphy et al

description: These files contain lick timestamps, recorded on Med Associates equipment, in an experiment in which rats had access to either protein-containing and/or carbohydrate-containing solutions. Rats were maintained on either a protein-restricted diet or control diet. Data on body weight and food intake are also included. In addition to data files, the zipped folder contains analysis scripts (written in Python 3.6) and metafiles which are used to index datafiles and assign individual data files to subjects/days.
DOI: 10.17632/8gwjj4ybg8.1
title: Automated analysis of electrophoresis images for inter-delta fingerprint yeast typing

description: Three files have been uploaded, corresponding with the three parts of this program. The second part is developed in R and the other two (first and third parts) in Python. The first part selects each lane in the digitalized electrophoresis gel and extracts its intensity signal spectrum. The second part identifies the most important peak in the spectrum (each band of the line). The third part compares the bands of each line, identifying the isolates that belongs to the same strain.
DOI: 10.17632/63242cmbyt.1
title: In-host microevolution of Aspergillus fumigatus: a phenotypic and genotypic analysis
DOI: 10.17632/cvnp3kmcc6.1
title: ProbeZT: Simulation of transport coefficients of molecular electronic junctions under environmental effects using Büttiker's probes

description: We present our in-house quantum transport package, ProbeZT. This program provides linear response coefficients: electrical and electronic thermal conductances, as well as the thermopower of molecular junctions in which electrons interact with the surrounding thermal environment. Calculations are performed based on the Büttiker probe method, which introduces decoherence, energy exchange and dissipation effects phenomenologically using virtual electrode terminals called probes. The program can realize different types of probes, each introducing various environmental effects, including elastic and inelastic scattering of electrons. The molecular system is described by an arbitrary tight-binding Hamiltonian, allowing the study of different geometries beyond simple one-dimensional wires. Applications of the program to study the thermoelectric performance of molecular junctions are illustrated. The program also has a built-in functionality to simulate electron transport in double-stranded DNA molecules based on a tight-binding (ladder) description of the junction.
DOI: 10.5281/zenodo.1100970
title: Data To Three-Dimensional Binocular Eye-Hand Coordination In Normal Vision And With Simulated Visual Impairment

description: This record contains experimental and analysis scripts (written in Matlab) as well as raw and processed data to reproduce the results shown in:

Maiello, G., Kwon, M. & Bex, P.J. (2018) Three-dimensional binocular eye--hand coordination in normal vision and with simulated visual impairment. <em>Experimental Brain Research</em>. https://doi.org/10.1007/s00221-017-5160-8
description: This research was supported by National Institutes of Health grant R01EY021553.
DOI: 10.5281/zenodo.1100971
title: Data To Three-Dimensional Binocular Eye-Hand Coordination In Normal Vision And With Simulated Visual Impairment

description: This record contains experimental and analysis scripts (written in Matlab) as well as raw and processed data to reproduce the results shown in:

Maiello, G., Kwon, M. & Bex, P.J. (2018) Three-dimensional binocular eye--hand coordination in normal vision and with simulated visual impairment. <em>Experimental Brain Research</em>. https://doi.org/10.1007/s00221-017-5160-8
description: This research was supported by National Institutes of Health grant R01EY021553.
DOI: 10.17632/2ns7mtgtph.1
title: Interpolated data used in 'Average middle ear frequency response curves with preservation of curve morphology characteristics'

description: This data respresents the stapes velocity response magnitude and phase of 6 specimens measured using laser Doppler vibrometry, but the data was interpolated resulting in 500 points instead of just 6 measurement points per octave for a frequency range of 0.125-8 kHz. The specimens did not have a cochlear load and the ear canal was intact. This data was used to illustrate the advantages of pre-aligning curve data before taking the cross-sectional mean.
DOI: 10.17632/2ns7mtgtph.2
title: Interpolated data used in 'Average middle ear frequency response curves with preservation of curve morphology characteristics'

description: This data respresents the stapes velocity response magnitude and phase of 6 specimens measured using laser Doppler vibrometry, but the data was interpolated resulting in 500 points instead of just 6 measurement points per octave for a frequency range of 0.125-8 kHz. The specimens did not have a cochlear load and the ear canal was intact. This data was used to illustrate the advantages of pre-aligning curve data before taking the cross-sectional mean.
DOI: 10.17632/yrtgg8w9k8.1
title: KaTie: For parton-level event generation with k_T-dependent initial states

description: KaTie is a parton-level event generator for hadron scattering processes that can deal with partonic initial-state momenta with an explicit transverse momentum dependence causing them to be space-like. Provided with the necessary transverse momentum dependent parton density functions, it calculates the tree-level off-shell matrix elements and performs the phase space importance sampling to produce weighted events, for example in the Les Houches Event File format. It can deal with arbitrary processes within the Standard Model, for up to at least four final-state particles. Furthermore, it can produce events for single-parton scattering as well as for multi-parton scattering.
DOI: 10.17632/4dy5fnxszy.1
title: Born Global Firms WoS dataset

description: In this study, the authors searched for all articles with the words “born-global”, “born global”, “born globals”, “international new venture”, “international new ventures”, “rapid internationalization”, “new global business”, “new global businesses”, “fast internationalizers”, “early internationalizers” as the query to search the following fields within a record: Title, Abstract, Author Keywords, and Keywords Plus®. Because of the nature of collecting papers by the query, the corpus included papers that are not relevant to our strict criteria. Accordingly, it was necessary to analyze Title, Abstract and Keywords fields of retrieved documents, respectively. In consequence, the collection of 453 papers published between 1994 and 2016 was obtained. This set was then fixed as the basis for all future analysis.
DOI: 10.3886/e101249v1
title: Inequality and education, Spain 1860 - Explorations in Economic History

description: This article contributes to the debate on institutions and economic
development by examining the historical link between land access inequality and
education. Using information from the 464 districts existent in mid-19th
century Spain, this paper confirms that there is a negative relationship
between the fraction of farm labourers and male literacy rates. This result
does not disappear when a large set of potential confounding factors are
included in the analysis. The use of the Reconquest
as a quasi-natural experiment allows us to rule out further concerns about
potential endogeneity. In addition, controlling for different sources of spatial
dependence does not explain away this result either. By analysing the
rural-urban divide and the gender-specific information on the number of schools
and teachers, as well as schooling enrolment rates, this paper also explores
the mechanisms behind the observed relationship. As well as supply factors, our
results show that demand effects also played a significant role in explaining the
negative impact of inequality on education.
DOI: 10.15468/34y2bj
title: Contributions to the knowledge of Chinese flea beetle fauna (II): Baoshanaltica new genus and Sinosphaera new genus (Coleoptera, Chrysomelidae, Galerucinae, Alticini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ruan, Yongying, Konstantinov, Alexander S., Prathapan, K. D., Yang, Xingke (2017): Contributions to the knowledge of Chinese flea beetle fauna (II): Baoshanaltica new genus and Sinosphaera new genus (Coleoptera, Chrysomelidae, Galerucinae, Alticini). ZooKeys 720: 103-120, DOI: http://dx.doi.org/10.3897/zookeys.720.12715, URL: http://dx.doi.org/10.3897/zookeys.720.12715
DOI: 10.15468/af2tbi
title: Insights on the genus Acronymolpus Samuelson with new synonymies and exclusion of Stethotes Baly from the fauna of New Caledonia (Coleoptera, Chrysomelidae, Eumolpinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gomez-Zurita, Jesus (2017): Insights on the genus Acronymolpus Samuelson with new synonymies and exclusion of Stethotes Baly from the fauna of New Caledonia (Coleoptera, Chrysomelidae, Eumolpinae). ZooKeys 720: 65-75, DOI: http://dx.doi.org/10.3897/zookeys.720.13582, URL: http://dx.doi.org/10.3897/zookeys.720.13582
DOI: 10.5061/dryad.39td9/1
title: Life history data of Daphnia pulex from an UVR experiment

description: Mean values of life history variables of two Daphnia pulex lineages, from high and low lands, that where exposed to UV radiation in a 2x2 designee.
DOI: 10.5061/dryad.ms343/2
title: for_pca_11042016

description: Dataset used for the PCA analysis
DOI: 10.5281/zenodo.1095662
title: Taxon Sampling And Inferred Community Phylogenies: R Replication Code And Data.

description: 1 ) R code for simulating community phylogenies:

community_simulations_creation.R

 

2) R code for creating and comparing phylogenetic diversity metrics:

simulated_metric_calculation_and_comparison.R

empirical_metric_calculation_and_comparison.R

 

3) R code and data for statistical analyses:

simulated_data_analysis.R

empirical_data_analysis.R

simulated_interval_individual_lme_data.csv

simulated_summary_interval_individual_lme_data.csv

empirical_interval_individual_lme_data.csv

empirical_summary_interval_lme_data.csv
DOI: 10.5281/zenodo.1095663
title: Taxon Sampling And Inferred Community Phylogenies: R Replication Code And Data.

description: 1 ) R code for simulating community phylogenies:

community_simulations_creation.R

 

2) R code for creating and comparing phylogenetic diversity metrics:

simulated_metric_calculation_and_comparison.R

empirical_metric_calculation_and_comparison.R

 

3) R code and data for statistical analyses:

simulated_data_analysis.R

empirical_data_analysis.R

simulated_interval_individual_lme_data.csv

simulated_summary_interval_individual_lme_data.csv

empirical_interval_individual_lme_data.csv

empirical_summary_interval_lme_data.csv
DOI: 10.4125/pd0097th
title: Copper-Catalyzed Base-Controlled Diastereoselective Synthesis of Tetraarylethanes from 2-Benzylpyridines

description: A highly efficient and base-controlled diastereoselective synthesis of tetraarylethanes through copper-catalyzed dehydrogenative homocoupling of readily available 2-benzylpyridines is reported. Various dl- and meso-tetraarylethanes were diastereoseletively synthesized by this new protocol, where base plays the role of the principle modulator: Grignard reagents selectively provide the C2 isomers, whereas KOt-Bu promotes the formation of the meso-tetraarylethanes. Interestingly, the presence of excess KOt-Bu generates the (E)-tetraarylethenes as the only product.
DOI: 10.4119/unibi/2915656
title: Evaluation data for "GeFaST: An improved method for OTU assignment by generalising Swarm's fastidious clustering approach" (draft version)

description: **NOTE: This data publication refers to an outdated version of the article. See [10.4119/unibi/2918928](http://doi.org/10.4119/unibi/2918928) for the data repository of the final manuscript.**<br><br>

Data sets and results of the comparative analyses of [GeFaST](https://github.com/romueller/gefast) and [Swarm](https://github.com/torognes/swarm/) performed in "GeFaST: An improved method for OTU assignment by generalising Swarm's fastidious clustering approach" (submitted). The scripts for the analyses are available [here](https://github.com/romueller/gefast-paper-analysis).<br><br>

**dereplicated.tar.bz2**: Data sets used in the analyses of performance (_ELDERMET_ [1]) and clustering quality (_even_ & _uneven_ [2]). The original data sets (see below) have been dereplicated and sequences containing ambiguous bases (IUPAC code _n_ resp. _N_) have been deleted.<br>

 * _even_: [http://sbr2.sb-roscoff.fr/download/externe/de/fmahe/even.fasta.bz2](http://sbr2.sb-roscoff.fr/download/externe/de/fmahe/even.fasta.bz2)
 * _uneven_: [http://sbr2.sb-roscoff.fr/download/externe/de/fmahe/uneven.fasta.bz2](http://sbr2.sb-roscoff.fr/download/externe/de/fmahe/uneven.fasta.bz2)
 * _ELDERMET_: [http://www.ebi.ac.uk/ena/data/view/SRP003158](http://www.ebi.ac.uk/ena/data/view/SRP003158)
 
The analysis of the clustering quality also requires the [reference data set](https://raw.githubusercontent.com/torognes/vsearch-eval/master/cluster/data/rrna_reference.fasta).<br><br>

**eldermet\_subsamples\_X.tar.bz2**: Each archive contains three random subsamples of _ELDERMET_ of size X, with X being the percentage of sequences from _eldermet\_derep.fasta_ (in _dereplicated.tar.bz2_) in the subsample.<br><br>

**results.tar.bz2**: Results files containing the measurements of performance resp. clustering quality.<br>

 * _eldermet-performance-measurements.csv_: runtime and memory consumption for different thresholds
 * _eldermet-subsampling-measurements.csv_: runtime and memory consumption for different data set sizes
 * _even-metrics.csv_: clustering quality for different thresholds.
 * _uneven-metrics.csv_: clustering quality for different thresholds <br><br>


References:

[1] Claesson M.J., Cusack S., O'Sullivan O., Greene-Diniz R., de Weerd H., Flannery E., Marchesi J.R., Falush D., Dinan T., Fitzgerald G., Stanton C., van Sinderen D., O'Connor M., Harnedy N., O'Connor K., Henry C., O'Mahony D., Fitzgerald A.P., Shanahan F., Twomey C., Hill C., Ross R.P., O'Toole P.W.: Composition, variability, and temporal stability of the intestinal microbiota of the elderly.
Proceedings of the National Academy of Sciences 108 (Supplement 1), 4586-4591 (2011). doi: [10.1073/pnas.1000097107](https://doi.org/10.1073/pnas.1000097107)

[2] Mahé F., Rognes T., Quince C., de Vargas C., Dunthorn M.: Swarm: robust and fast clustering method for amplicon-based studies. PeerJ 2, 593 (2014). doi: [10.7717/peerj.593](https://doi.org/10.7717/peerj.593)