DOI: 10.5281/zenodo.3366104
title: Bioacoustic monitoring reveals shifts in breeding songbird populations and singing behaviour with selective logging in tropical forests

description: <b>Description: </b>Counts of individual male songbirds, males and females, songs and duets and original WAV audio recordings used to generate them<b>Project: </b>This dataset was collected as part of the following SAFE research project: <b>Population and behavioral responses of songbirds to logging and rain forest fragmentation</b><b>XML metadata: </b>GEMINI compliant metadata for this dataset is available here<b>Files: </b>This dataset consists of 13 files: Pillay_et_al_Songbirds_Acoustic_Counts_Vegetation_Cover.xlsx, 2013_B.zip, 2013_D.zip, 2013_E.zip, 2013_F.zip, 2013_OG1.zip, 2013_OG2.zip, 2014_B.zip, 2014_D.zip, 2014_E.zip, 2014_F.zip, 2014_OG1.zip, 2014_OG2.zip<b>Pillay_et_al_Songbirds_Acoustic_Counts_Vegetation_Cover.xlsx</b>This file contains dataset metadata and 5 data tables:<b>CountsMale</b> (described in worksheet CountsMale)Description: Counts of male individuals of songbird speciesNumber of fields: 12Number of data rows: 5700Fields: <b>year</b>: Year of Survey (Field type: id)<b>ftype</b>: Forest Type (Field type: categorical)<b>block</b>: Unique ID of Blocks within which Sampling Plots are located (Field type: id)<b>location</b>: Unique ID of Sampling Plots (Field type: location)<b>fragment</b>: Future fragments within which sampling plots in logged forest plots were located; not applicable for unlogged forest plots (Field type: id)<b>species</b>: Species Identity (Field type: taxa)<b>day</b>: Days 1 to 2 of sampling in each plot (Field type: numeric)<b>date</b>: Date of Sampling (Field type: date)<b>jul.date</b>: Julian Date of Sampling (Field type: numeric)<b>time1-6AM</b>: Counts of male individuals for 6:00-6:05 AM; detection histories generated by collapsing counts to 1/0 data (Field type: numeric)<b>time2-7AM</b>: Counts of male individuals for 7:00-7:05 AM; detection histories generated by collapsing counts to 1/0 data (Field type: numeric)<b>time3-8AM</b>: Counts of male individuals for 8:00-8:05 AM; detection histories generated by collapsing counts to 1/0 data (Field type: numeric)<b>CountsMaleFemale</b> (described in worksheet CountsMaleFemale)Description: Counts of male plus female individuals of songbird speciesNumber of fields: 12Number of data rows: 1000Fields: <b>year</b>: Year of Survey (Field type: id)<b>ftype</b>: Forest Type (Field type: categorical)<b>block</b>: Unique ID of Blocks within which Sampling Plots are located (Field type: id)<b>location</b>: Unique ID of Sampling Plots (Field type: location)<b>fragment</b>: Future fragments within which sampling plots in logged forest plots were located; not applicable for unlogged forest plots (Field type: id)<b>species</b>: Species Identity (Field type: taxa)<b>day</b>: Days 1 to 2 of sampling in each plot (Field type: numeric)<b>date</b>: Date of Sampling (Field type: date)<b>jul.date</b>: Julian Date of Sampling (Field type: numeric)<b>time1-6AM</b>: Counts of male and female individuals for 6:00-6:05 AM; detection histories generated by collapsing counts to 1/0 data (Field type: numeric)<b>time2-7AM</b>: Counts of male and female individuals for 7:00-7:05 AM; detection histories generated by collapsing counts to 1/0 data (Field type: numeric)<b>time3-8AM</b>: Counts of male and female individuals for 8:00-8:05 AM; detection histories generated by collapsing counts to 1/0 data (Field type: numeric)<b>CountsSong</b> (described in worksheet CountsSong)Description: Counts of songsNumber of fields: 9Number of data rows: 2850Fields: <b>year</b>: Year of Survey (Field type: id)<b>ftype</b>: Forest Type (Field type: categorical)<b>block</b>: Unique ID of Blocks within which Sampling Plots are located (Field type: id)<b>location</b>: Unique ID of Sampling Plots (Field type: location)<b>fragment</b>: Future fragments within which sampling plots in logged forest plots were located; not applicable for unlogged forest plots (Field type: id)<b>species</b>: Species Identity (Field type: taxa)<b>day3-6AM</b>: Counts of songs for 6:00-6:05 AM on day 3 or third consecutive day of sampling in each plot (Field type: numeric)<b>day3-7AM</b>: Counts of songs for 7:00-7:05 AM on day 3 or third consecutive day of sampling in each plot (Field type: numeric)<b>day3-8AM</b>: Counts of songs for 8:00-8:05 AM on day 3 or third consecutive day of sampling in each plot (Field type: numeric)<b>CountsDuet</b> (described in worksheet CountsDuet)Description: Counts of duetsNumber of fields: 9Number of data rows: 500Fields: <b>year</b>: Year of Survey (Field type: id)<b>ftype</b>: Forest Type (Field type: categorical)<b>block</b>: Unique ID of Blocks within which Sampling Plots are located (Field type: id)<b>location</b>: Unique ID of Sampling Plots (Field type: location)<b>fragment</b>: Future fragments within which sampling plots in logged forest plots were located; not applicable for unlogged forest plots (Field type: id)<b>species</b>: Species Identity (Field type: taxa)<b>day3-6AM</b>: Counts of duets for 6:00-6:05 AM on day 3 or third consecutive day of sampling in each plot (Field type: numeric)<b>day3-7AM</b>: Counts of duets for 7:00-7:05 AM on day 3 or third consecutive day of sampling in each plot (Field type: numeric)<b>day3-8AM</b>: Counts of duets for 8:00-8:05 AM on day 3 or third consecutive day of sampling in each plot (Field type: numeric)<b>VegetationCover</b> (described in worksheet VegetationCover)Description: Vegetation cover dataNumber of fields: 6Number of data rows: 50Fields: <b>location</b>: Unique ID of Sampling Plots (Field type: location)<b>forest.type</b>: Forest Type (Field type: categorical)<b>udens</b>: Proportion understory cover (Field type: numeric)<b>cc</b>: Proportion canopy cover (Field type: numeric)<b>can.ht</b>: Average canopy height (Field type: numeric)<b>max.canopy</b>: Maximum height of standing vegetation (Field type: numeric)<b>2013_B.zip</b>Description: WAV files from 2013 for site B<b>2013_D.zip</b>Description: WAV files from 2013 for site D<b>2013_E.zip</b>Description: WAV files from 2013 for site E<b>2013_F.zip</b>Description: WAV files from 2013 for site F<b>2013_OG1.zip</b>Description: WAV files from 2013 for site OG1<b>2013_OG2.zip</b>Description: WAV files from 2013 for site OG2<b>2014_B.zip</b>Description: WAV files from 2014 for site B<b>2014_D.zip</b>Description: WAV files from 2014 for site D<b>2014_E.zip</b>Description: WAV files from 2014 for site E<b>2014_F.zip</b>Description: WAV files from 2014 for site F<b>2014_OG1.zip</b>Description: WAV files from 2014 for site OG1<b>2014_OG2.zip</b>Description: WAV files from 2014 for site OG2<b>Date range: </b>2013-04-09 to 2014-07-26<b>Latitudinal extent: </b>4.6881 to 4.7530<b>Longitudinal extent: </b>116.9477 to 117.6249<b>Taxonomic coverage: </b><br> All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets. - Animalia <br> - - Chordata <br> - - - Aves <br> - - - - Passeriformes <br> - - - - - Timaliidae <br> - - - - - - <i>Stachyris</i> <br> - - - - - - - <i>Stachyris maculata</i> <br> - - - - - - - <i>Stachyris erythroptera</i> <br> - - - - - - - <i>Stachyris poliocephala</i> <br> - - - - - - <i>Macronus</i> <br> - - - - - - - <i>Macronus bornensis</i> <br> - - - - - - - <i>Macronus ptilosus</i> (as synonym: <i>Macronous ptilosus</i>)<br> - - - - - - <i>Stachyridopsis</i> <br> - - - - - - - <i>Stachyridopsis rufifrons</i> (as synonym: <i>Stachyris rufifrons</i>)<br> - - - - - - <i>Pomatorhinus</i> <br> - - - - - - - <i>Pomatorhinus montanus</i> <br> - - - - - Pellorneidae <br> - - - - - - <i>Trichastoma</i> <br> - - - - - - - <i>Trichastoma bicolor</i> <br> - - - - - - <i>Alcippe</i> <br> - - - - - - - <i>Alcippe brunneicauda</i> <br> - - - - - - <i>Pellorneum</i> <br> - - - - - - - <i>Pellorneum capistratum</i> <br> - - - - - - <i>Malacocincla</i> <br> - - - - - - - <i>Malacocincla malaccensis</i> <br> - - - - - - <i>Malacopteron</i> <br> - - - - - - - <i>Malacopteron magnirostre</i> <br> - - - - - - - <i>Malacopteron magnum</i> <br> - - - - - - - <i>Malacopteron cinereum</i> <br> - - - - - - - <i>Malacopteron affine</i> <br> - - - - - Pycnonotidae <br> - - - - - - <i>Alophoixus</i> <br> - - - - - - - <i>Alophoixus bres</i> <br> - - - - - - - <i>Alophoixus phaeocephalus</i> <br> - - - - - - <i>Tricholestes</i> <br> - - - - - - - <i>Tricholestes criniger</i> <br> - - - - - - <i>Iole</i> <br> - - - - - - - <i>Iole olivacea</i> <br> - - - - - - <i>Pycnonotus</i> <br> - - - - - - - <i>Pycnonotus atriceps</i> <br> - - - - - - - <i>Pycnonotus simplex</i> <br> - - - - - - - <i>Pycnonotus eutilotus</i> <br> - - - - - - - <i>Pycnonotus brunneus</i> <br> - - - - - - - <i>Pycnonotus erythropthalmos</i> <br> - - - - - Stenostiridae <br> - - - - - - <i>Culicicapa</i> <br> - - - - - - - <i>Culicicapa ceylonensis</i> <br> - - - - - Muscicapidae <br> - - - - - - <i>Cyornis</i> <br> - - - - - - - <i>Cyornis superbus</i> <br> - - - - - - - <i>Cyornis unicolor</i> <br> - - - - - - <i>Rhinomyias</i> <br> - - - - - - - <i>Rhinomyias umbratilis</i> <br> - - - - - - <i>Trichixos</i> <br> - - - - - - - <i>Trichixos pyrropygus</i> <br> - - - - - - <i>Copsychus</i> <br> - - - - - - - <i>Copsychus stricklandii</i> <br> - - - - - Monarchidae <br> - - - - - - <i>Terpsiphone</i> <br> - - - - - - - <i>Terpsiphone paradisi</i> <br> - - - - - - <i>Hypothymis</i> <br> - - - - - - - <i>Hypothymis azurea</i> <br>