cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7205393.v1
title: Long-term effects of straw and straw-derived biochar on soil aggregation and fungal community in a rice-wheat rotation system

description: Straw and straw-derived biochar would affect the aggregation and fungi community structure in different aggregates. Therefore, Illumina Miseq sequeneing analysis was performed to determine the relationship between fertilization and fungi composition.<br>
DOI: 10.7284/128336
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1714 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7205294
title: Table S3.xlsx

description: <b>Table S3. GSEA outputs.</b>
DOI: 10.6084/m9.figshare.7205294.v1
title: Table S3.xlsx

description: <b>Table S3. GSEA outputs.</b>
DOI: 10.7284/133149
title: Gravimeter data collected during research cruise SR1714 using a Bell BGM-3 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128337
title: INS (Inertial Navigation System) data collected during research cruise SR1714 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131935
title: INS (Inertial Navigation System) data collected during research cruise SR1714 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131936
title: INS (Inertial Navigation System) data collected during research cruise SR1714 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7205279
title: MOESM8 of p53 modeling as a route to mesothelioma patients stratification and novel therapeutic identification

description: Additional file 8: Table S8. Pearson correlation analysis of the STSFA scores.
DOI: 10.6084/m9.figshare.7205282
title: MOESM9 of p53 modeling as a route to mesothelioma patients stratification and novel therapeutic identification

description: Additional file 9: Table S9. Univariate_Cox_regression analysis.
DOI: 10.6084/m9.figshare.7205279.v1
title: MOESM8 of p53 modeling as a route to mesothelioma patients stratification and novel therapeutic identification

description: Additional file 8: Table S8. Pearson correlation analysis of the STSFA scores.
DOI: 10.6084/m9.figshare.7205282.v1
title: MOESM9 of p53 modeling as a route to mesothelioma patients stratification and novel therapeutic identification

description: Additional file 9: Table S9. Univariate_Cox_regression analysis.
DOI: 10.17632/8nxk8f36j7.2
title: DED melt pool dimensions ANN dataset

description: Melt pool dimensions of cross-sections of single track DED deposits produced by a Trumpf TruLaser Cell 7040. More details of the work herein are contained in the work titled "On the use of Artificial Neural Networks to Determine Processing Windows in Directed Energy Deposition Applications".
DOI: 10.7284/131937
title: INS (Inertial Navigation System) data collected during research cruise SR1714 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128328
title: Meteorological Station data collected during research cruise SR1714 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/wzcrzj33nm.1
title: Dr Victor Baladrón

description: Before the operation, the hepatic reserve was assessed with the LiMON® monitor by means of the determination of the ICG-PDR. The ICG-PDR dose used was 0.25 mg/kg. The monitor has a calculator that evaluates the amount and correct dilution of ICG based on the patient's weight and height, dosage, and concentration of the vial contents. The monitor starts calibration and prompts for injection. The curve detected message is displayed and the measurement starts. Once this has been completed, the result is displayed in a table. For the assessment of hepatic flow and hepatic function, the plasma concentration of indocyanine green is measured by spectrophotometry at the time of injection and after 15 minutes. After liver resection surgery, the patient was admitted to Post-op. Twenty-four hours after the operation, the hepatic reserve was assessed using the same technique. On the fifth postoperative day, either in Post-op if the patient continues to be monitored, or on the hospital ward if discharged, an analysis was taken, including blood count, coagulation, biochemistry (including liver function), total bilirubin and prothrombin time.
DOI: 10.7284/128330
title: Multibeam Echosounder data collected during research cruise SR1714 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/ny945rfh3t.8
title: Adenopathy and extensive skin patch overlying a plasmacytoma (AESOP): two morphological variants can be outlined. Supplemental Data. Published in the JAAD.
DOI: 10.7284/128332
title: Multibeam Echosounder data collected during research cruise SR1714 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131932
title: Winch data collected during research cruise SR1714 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/rk28yn8gwg.1
title: An embryonic stem cell-specific heterochromatin state promotes core histone exchange in the absence of DNA accessibility

description: Nucleosome turnover concomitant with incorporation of the replication-independent histone variant H3.3 is a hallmark of regulatory regions in the animal genome. Nucleosome turnover is known to be universally linked to DNA accessibility and histone acetylation. In mouse embryonic stem cells, H3.3 is also highly enriched at interstitial heterochromatin, most prominently at intracisternal A-particle endogenous retroviral elements. Interstitial heterochromatin is established over confined domains by the TRIM28-KAP1/SETDB1 corepressor complex and has stereotypical features of repressive chromatin, such as H3K9me3 and recruitment of all HP1 isoforms. Here, we demonstrate that fast histone turnover and H3.3 incorporation is compatible with these hallmarks of heterochromatin. Further, we find that Smarcad1 chromatin remodeler evicts nucleosomes generating accessible DNA. Free DNA is repackaged via DAXX-mediated nucleosome assembly with histone variant H3.3 in this dynamic heterochromatin state. Loss of H3.3 in mouse embryonic stem cells elicits a highly specific opening of interstitial heterochromatin with minimal effects on other silent or active regions of the genome.
DOI: 10.7284/131933
title: Winch data collected during research cruise SR1714 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131934
title: Winch data collected during research cruise SR1714 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128338
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR1716 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128342
title: Expendable Probe data collected during research cruise SR1716 using a Turo Quoll instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128345
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1716 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133150
title: Gravimeter data collected during research cruise SR1716 using a Bell BGM-3 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7205219
title: MOESM14 of p53 modeling as a route to mesothelioma patients stratification and novel therapeutic identification

description: Additional file 14: Figure S1. InStat analysis of 8 genes significantly correlated with stages. This file covers the statistical analysis (types of test and p-values that were obtained for the statistical analysis of genes correlated with stage.
DOI: 10.6084/m9.figshare.7205219.v1
title: MOESM14 of p53 modeling as a route to mesothelioma patients stratification and novel therapeutic identification

description: Additional file 14: Figure S1. InStat analysis of 8 genes significantly correlated with stages. This file covers the statistical analysis (types of test and p-values that were obtained for the statistical analysis of genes correlated with stage.
DOI: 10.7284/128347
title: INS (Inertial Navigation System) data collected during research cruise SR1716 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7205207
title: Additional file 1: of RNA viromes of the oriental hybrid lily cultivar “Sorbonne”

description: Table S1. Information of RNA-Seq libraries for lily cultivar “Sorbonne.” Index indicates name of individual library from three different projects, which can be further divided into A, B, and C. Raw data can be downloaded from SRA database using respective accession numbers. Table S2. Summary of virus-associated reads, contigs, and FPKM values. Raw sequence reads in SRA format were converted to FASTA format using the SRA Toolkit. MEGABLAST was conducted using raw sequence reads and assembled contigs against virus reference genomes using e-value 1e-6 as a cutoff. To calculate FPKM values, raw sequence reads were mapped on the reference virus genome using the BWA program followed by the pileup program implemented in the BBMap package. Table S3. Assembled virus genome sequences. Orange shells indicate assembled virus genomes covering ORFs, while light yellow shells indicate partial virus genome sequences. (XLSX 116 kb)
DOI: 10.6084/m9.figshare.7205210
title: MOESM13 of p53 modeling as a route to mesothelioma patients stratification and novel therapeutic identification

description: Additional file 13: Table S13. STSFA_score_groups_by_STAGE.xlsx.
DOI: 10.6084/m9.figshare.7205210.v1
title: MOESM13 of p53 modeling as a route to mesothelioma patients stratification and novel therapeutic identification

description: Additional file 13: Table S13. STSFA_score_groups_by_STAGE.xlsx.
DOI: 10.6084/m9.figshare.7205207.v1
title: Additional file 1: of RNA viromes of the oriental hybrid lily cultivar “Sorbonne”

description: Table S1. Information of RNA-Seq libraries for lily cultivar “Sorbonne.” Index indicates name of individual library from three different projects, which can be further divided into A, B, and C. Raw data can be downloaded from SRA database using respective accession numbers. Table S2. Summary of virus-associated reads, contigs, and FPKM values. Raw sequence reads in SRA format were converted to FASTA format using the SRA Toolkit. MEGABLAST was conducted using raw sequence reads and assembled contigs against virus reference genomes using e-value 1e-6 as a cutoff. To calculate FPKM values, raw sequence reads were mapped on the reference virus genome using the BWA program followed by the pileup program implemented in the BBMap package. Table S3. Assembled virus genome sequences. Orange shells indicate assembled virus genomes covering ORFs, while light yellow shells indicate partial virus genome sequences. (XLSX 116 kb)
DOI: 10.7284/131943
title: INS (Inertial Navigation System) data collected during research cruise SR1716 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131944
title: INS (Inertial Navigation System) data collected during research cruise SR1716 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131945
title: INS (Inertial Navigation System) data collected during research cruise SR1716 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128339
title: Meteorological Station data collected during research cruise SR1716 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128340
title: Multibeam Echosounder data collected during research cruise SR1716 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7205180
title: MOESM2 of Joint index vector: a novel assessment measure for stratified medicine in patients with rheumatoid arthritis

description: Additional file 2. Â Sample Data for testing EXCEL macro.
DOI: 10.7284/128341
title: Multibeam Echosounder data collected during research cruise SR1716 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7205177
title: MOESM1 of Joint index vector: a novel assessment measure for stratified medicine in patients with rheumatoid arthritis

description: Additional file 1. DataSet of 11,013 patients without missing values for SDAI or HAQ-DI and serial registration data from patients without orthopedic surgery between 2013 and 2014 (n = 10,206) and between 2015 and 2016 (n = 10,118). Transformation matrices and estimated vectors are also included.
DOI: 10.6084/m9.figshare.7205180.v1
title: MOESM2 of Joint index vector: a novel assessment measure for stratified medicine in patients with rheumatoid arthritis

description: Additional file 2. Â Sample Data for testing EXCEL macro.
DOI: 10.6084/m9.figshare.7205177.v1
title: MOESM1 of Joint index vector: a novel assessment measure for stratified medicine in patients with rheumatoid arthritis

description: Additional file 1. DataSet of 11,013 patients without missing values for SDAI or HAQ-DI and serial registration data from patients without orthopedic surgery between 2013 and 2014 (n = 10,206) and between 2015 and 2016 (n = 10,118). Transformation matrices and estimated vectors are also included.
DOI: 10.7284/131940
title: Winch data collected during research cruise SR1716 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7205171
title: Table S1.xlsx

description: <b>Table S1. Logistic regression analysis of LNM risk in thyroid cancer.</b>
DOI: 10.6084/m9.figshare.7205174
title: Table S2.xlsx

description: <b>Table S2. Correlation between LAMB3 expression and methylation in thyroid cancer cell lines.</b>
DOI: 10.6084/m9.figshare.7205171.v1
title: Table S1.xlsx

description: <b>Table S1. Logistic regression analysis of LNM risk in thyroid cancer.</b>
DOI: 10.7284/131941
title: Winch data collected during research cruise SR1716 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131942
title: Winch data collected during research cruise SR1716 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128371
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR1717 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7205135
title: main_data_v2.tar.gz

description: Version 2 of the main set of junctions used within the paper. This version has been derived from more recent versions of the RNAseq aligners and Portcullis.
DOI: 10.7284/128362
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SR1717 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128365
title: Expendable Probe data collected during research cruise SR1717 using a Turo Quoll instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128368
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1717 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7205102.v1
title: Untitled Item192 samples for publishing "Longitudinal gut microbiota patterns in preterm infants with necrotizing enterocolitis or late-onset sepsis: an observational prospective study"

description: We selected 24 preterm newborns, among them four subsequently developed NEC, three LOS including bacteremia and pneumonia, and 17 healthy controls. Totally 192 longitudinal fecal samples were prospectively collected, right after admission until discharge day, from each patient. We amplified and sequenced V3~V4 region of bacterial 16s rDNA from each intestinal microbiome sample, using Illumina-MiSeq high-throughput sequencing platform.
DOI: 10.6084/m9.figshare.7205102.v2
title: 192 samples - microbial sequencing data for publishing "Longitudinal gut microbiota patterns in preterm infants with necrotizing enterocolitis or late-onset sepsis: an observational prospective study"

description: We selected 24 preterm newborns, among them four subsequently developed NEC, three LOS including bacteremia and pneumonia, and 17 healthy controls. Totally 192 longitudinal fecal samples were prospectively collected, right after admission until discharge day, from each patient. We amplified and sequenced V3~V4 region of bacterial 16s rDNA from each intestinal microbiome sample, using Illumina-MiSeq high-throughput sequencing platform.
DOI: 10.17632/xjhrjkvzxz.2
title: Questionnaires from the results of CoviHealth project

description: These questionnaires were available in the mobile application named as CoviHealth. They are distributed at the beginning of the study, every week to evaluate the knowledge, and, finally, to evaluate the satisfaction.
DOI: 10.6084/m9.figshare.7205072
title: Single residue mutation in integrase catalytic core domain affects feline foamy viral DNA integration

description: DD(35)E motif in catalytic core domain (CCD) of integrase (IN) is extremely involved in retroviral integration step. Here, nine single residue mutants of feline foamy virus (FFV) IN were generated to study their effects on IN activities and on viral replication. As expected, mutations in the highly conserved D107, D164, and E200 residues abolished all IN catalytic activities (3′-end processing, strand transfer, and disintegration) as well as viral infectivity by blocking viral DNA integration into cellular DNA. However, Q165, Y191, and S195 mutants, which are located closely to DDE motif were observed to have diverse levels of enzymatic activities, compared to those of the wild type IN. Their mutant viruses produced by one-cycle transfection showed different infectivity on their natural host cells. Therefore, it is likely that effects of single residue mutation at DDE motif is critical on viral replication depending on the position of the residues. Missense mutation in feline foamy virus integrase seriously decreases production of viral progeny.
DOI: 10.7284/133151
title: Gravimeter data collected during research cruise SR1717 using a Bell BGM-3 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7205057
title: Evaluation of AAV-DJ Vector for retinal gene therapy

description: raw data
DOI: 10.6084/m9.figshare.7205057.v1
title: Evaluation of AAV-DJ Vector for retinal gene therapy

description: raw data
DOI: 10.6084/m9.figshare.7205072.v1
title: Single residue mutation in integrase catalytic core domain affects feline foamy viral DNA integration

description: DD(35)E motif in catalytic core domain (CCD) of integrase (IN) is extremely involved in retroviral integration step. Here, nine single residue mutants of feline foamy virus (FFV) IN were generated to study their effects on IN activities and on viral replication. As expected, mutations in the highly conserved D107, D164, and E200 residues abolished all IN catalytic activities (3′-end processing, strand transfer, and disintegration) as well as viral infectivity by blocking viral DNA integration into cellular DNA. However, Q165, Y191, and S195 mutants, which are located closely to DDE motif were observed to have diverse levels of enzymatic activities, compared to those of the wild type IN. Their mutant viruses produced by one-cycle transfection showed different infectivity on their natural host cells. Therefore, it is likely that effects of single residue mutation at DDE motif is critical on viral replication depending on the position of the residues. Missense mutation in feline foamy virus integrase seriously decreases production of viral progeny.
DOI: 10.7284/128370
title: INS (Inertial Navigation System) data collected during research cruise SR1717 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/4xmy5wdcx5.1
title: Continuous and Pulsed LED light Energy Consumption

description: To determine the advantages and disadvantages of the energy-saving pulsed LED light technique in artificial lighting systems applied in closed plant production systems (CPPS), the energy equivalence between continuous LED light (commonly used) and pulsed LED light is required. In pulsed light technology, different pulse frequencies and duty cycles can be used. The collected data shows the energy consumption values (W/h) of ten light recipes to growth plants reported in the literature for each set of intensities (50, 110 y 180 umol m-2 s-1), frequencies (100, 500 and 1000 Hz) and duty cycle (40%, 50%, 60%, 70%, 80% and 90 %). The results show significant energy savings for each recipe, determining its frequency and specific duty cycle. The experiment was repeated three times, the data is shown in each excel sheet.
DOI: 10.7284/131951
title: INS (Inertial Navigation System) data collected during research cruise SR1717 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131952
title: INS (Inertial Navigation System) data collected during research cruise SR1717 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition