cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.bf8rt6b
title: Data from: Quantifying genotype x environment effects in long-term common wheat yield trials from an agroecologically diverse production region

description: Multienvironment trials (METs) are used to investigate the performance of
 crop genotypes. To efficiently generate reliable performance estimates,
 the magnitude and patterns of genotype × environment interaction (G×E) in
 MET data must be known. We quantified G×E in fall-planted common wheat
 (Triticum aestivum L.) in California, with the goal of increasing the
 reliability and efficiency of statewide variety testing activities. Linear
 mixed models and the genotype main effects plus G×E interaction effects
 (GGE) biplot method were used to analyze MET data for 211 common wheat
 genotypes, the MET consisted of 9 locations and 14 seasons. The
 representativeness and discriminating power of the MET locations were
 tested, and estimates of the optimum number of test locations were made.
 The analyses did not find evidence for significant, repeatable, crossover
 G×E. The genotype and G×E effects were of a similar magnitude, and the G×E
 effects were relatively strong compared with other sources of variance but
 were dominated by seasonal effects, with potentially repeatable
 genotype-by-location (G×L) effects being relatively weak. The GGE analyses
 did not detect repeatable G×L patterns across seasons. As a result, we
 conclude that the cereal production regions of California consist of a
 single, but unstable, mega-environment for common wheat grain yield. The
 test location evaluation found few significant differences between test
 locations in terms of how well they represent the target production
 environment. We estimate that the number of test locations could be
 reduced while maintaining trial accuracy, which would improve the resource
 use efficiency of statewide trial activities without sacrificing
 information about variety-specific common wheat yield performance.
description: Multi-environment trial
 yield data for common wheat (Triticum aestivum) grown in
 California.The data set consists of
 grain yield estimates (kg/ha) from a late-stage statewide
 multi-environment trial of common wheat (Triticum aestivum) conducted in
 California over growing seasons between 2004 and 2018 by the Small Grains
 Program of the University of California, Davis. Following quality control
 procedures the data set consists of 211 genotypes, tested in 9 locations
 and 14 seasons. A randomized complete block design with four replications
 was used at all trial locations. Tests were sown at seeding rates of 2.5
 to 3 million seeds/hectare. Each test plot was six to nine drill rows wide
 (12 to 22 cm row spacing) and 4.5 to 6 meters long.George_et_al_2019.csv
DOI: 10.5061/dryad.3b71520
title: Data from: Sensitivity of plant species to warming and altered precipitation dominates the community productivity in a semiarid grassland on the Loess Plateau

description: Global warming and changes in precipitation patterns can critically
 influence the structure and productivity of terrestrial ecosystems.
 However, the underlying mechanisms are not fully understood. We conducted
 two independent but complementary experiments (one with warming and
 precipitation manipulation (+ or – 30%) and another with selective plant
 removal) in a semi-arid grassland on the Loess Plateau, northwestern China
 to assess how warming and altered precipitation affect plant community.
 Our results showed that warming and altered precipitation affected
 community aboveground net primary productivity (ANPP) through impacting
 soil moisture. Results of the removal experiment showed competitive
 relationships among dominant grasses, dominant semi-shrub and non-dominant
 species, which played a more important role than soil moisture in the
 response of plant community to warming and altered precipitation.
 Precipitation addition intensified the competition but primarily benefited
 dominant semi-shrubs. Warming and precipitation reduction enhanced water
 stresses but increased ANPP of dominant semi-shrubs and grasses,
 indicating that plant tolerance to drought critically meditated the
 community responses. These findings suggest that specie competitivity for
 water resources as well as tolerance to environmental stresses may
 dominate the responses of plant communities on the Loess Plateaus to
 future climate change factors.
description: Fanglong Su-Ecology and
 evolutionOriginal data of soil
 moisture, soil temperature and aboveground plant biomass of the global
 change experiment and abovegroud plant biomass of the removal
 experiment.original
 data.xlsx
DOI: 10.5061/dryad.006bn4k
title: Evidence for individual discrimination and numerical assessment in collective antipredator behaviour in wild jackdaws (Corvus monedula)

description: Collective responses to threats occur throughout the animal kingdom but
 little is known about the cognitive processes underpinning them.
 Antipredator mobbing is one such response. Approaching a predator may be
 highly risky, but the individual risk declines and the likelihood of
 repelling the predator increases in larger mobbing groups. The ability to
 appraise the number of conspecifics involved in a mobbing event could
 therefore facilitate strategic decisions about whether to join. Mobs are
 commonly initiated by recruitment calls, which may provide valuable
 information to guide decision-making. We tested whether the number of wild
 jackdaws responding to recruitment calls was influenced by the number of
 callers. As predicted, playbacks simulating three or five callers tended
 to recruit more individuals than playbacks of one caller. Recruitment also
 substantially increased if recruits themselves produced calls. These
 results suggest that jackdaws use individual vocal discrimination to
 assess the number of conspecifics involved in initiating mobbing events,
 and use this information to guide their responses. Our results show
 support for the use of numerical assessment in antipredator mobbing
 responses and highlight the need for a greater understanding of the
 cognitive processes involved in collective behaviour.
description: README file
 Descriptions of all files. PB.Recruits.csv The main file for analysis. It includes the number of jackdaws recruited to playbacks of one, three and five individuals calling. (Plus all extra explanatory variables). Also included are columns detailing which individuals were calling in which playback track, to look at if any one individual was particularly influential.    R code for analysis of all data associated with number of recruits to jackdaw playbacks This file is the R code for all the analysis associated with the paper on number of individuals recruited to playbacks of one, three and five callers. It includes model checks, the IT approach to model selection (dredge), overdispersion checks and tests with the responsive scolding playbacks excluded. It also includes post hoc analysis on playbacks without repeat calls, tests between GS3 and GS5 and the MCMCglmm analysis for looking at influence of individual callers. JRC GEM AT Recruits to playbacks Sep 2019.R   indiveffects.csv Datafile to produce supplementary figure S3 which displays the number of birds that recruited to playbacks containing the calls of each individual whose calls were used in the study.
DOI: 10.5061/dryad.24bt62r
title: Data from: Clinician-rated measures for distal symmetrical axonal polyneuropathy: ACTTION systematic review

description: Distal symmetrical axonal polyneuropathy (DSP) is due to injury to
 peripheral sensory, motor, and autonomic nerve fibers, resulting in distal
 predominant sensory loss, pain, and gait instability. DSP occurs as a
 complication of multiple medical conditions including diabetes or HIV, or
 following exposure to various toxins such as chemotherapy. It affects at
 least 10% of the United States population. Few treatments for DSP are
 approved by regulatory agencies. Reliable and responsive outcome measures
 are integral to developing new DSP treatments. Multiple clinician-rated
 measures that incorporate neuropathy signs exist, however, it is not clear
 which of these measures performs best for various DSP phenotypes. This
 systematic review summarizes the content of 18 published measures of DSP
 identified using PubMed and from personal archives of the authors. The
 relative percentage of scoring dedicated to motor, reflex, large and small
 fiber sensory, and autonomic domains varied considerably among measures.
 The most common neurological examination items included in the scales were
 (1) vibration perception (n=18, 100%), (2) reflexes (n=16, 89%), (3)
 pin-prick perception (n=14, 78%), (4) muscle strength (n=11, 61%), (5)
 touch-pressure perception (n=9, 50%) and (6) joint-position perception
 (n=8, 44%). This review can be used to inform decisions regarding which of
 the available clinician-rated sign outcome measures would be most
 appropriate for use in a particular DSP population, based on the domains
 most affected by that neuropathy or on the domains most likely to be
 affected by a particular experimental therapy.
description: Combined supplement for
 dryad
DOI: 10.5061/dryad.6569787
title: Data from: Contingent strategies of risk management by snowshoe hares

description: Prey individuals employ several adaptive behaviours to reduce predation
 risk. We need to learn how those behaviours interact in an overall
 strategy of risk management, how strategies vary with changing conditions,
 and whether some behaviours might compensate for others. I addressed these
 issues with manipulative experiments evaluating how snowshoe hares’ (Lepus
 americanus) vigilance varies with their giving-up densities (GUDs) in
 artificial food patches. I tested whether the results, collected when
 there was no evidence of predation, were congruent with an earlier study
 under higher predation. When predator sign was common, vigilance depended
 directly on habitat. But when risk was low, habitat’s influence on
 vigilance was indirect. Hares were least vigilant during the new moon
 where the distance to escape habitat was far, but only in open risky
 habitat. Hares were more vigilant during the full moon, but only at
 stations far from escape habitat. Moon phase and additional cover had no
 effect on GUDs that were highest at open risky stations far from escape
 habitat. The results suggest that reduced risk allowed hares to allocate
 less time to vigilance, but they needed to forage for similar amounts of
 food during each moon phase in order to maintain their energetic state.
description: Douglas W Morris
 snowshoe hare foraging and behavioural dataThese data were
 collected by Douglas W. Morris during field work along an abandoned
 logging trail and adjacent alder habitat in January and February 2018
 (48°19'N, 89°47'W)
DOI: 10.15468/dl.5qs8az
title: Occurrence Download

description: A dataset containing 1100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "DatasetKey is one of (iNaturalist Research-grade Observations, European stag beetle monitoring network: transect observations, Observation.org, Nature data from around the World, IberArthro: A database compiling taxonomic and distributional data on Ibero-Balearic arthropods, Biodiversity4all Research-Grade Observations, Insect Collection from the Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Portugal, Two new species of Domene Fauvel, 1873 (Coleoptera: Staphylinidae: Paederinae) from Portugal and faunistic notes, International Barcode of Life project (iBOL), Telmatophilus typhae (Fallén, 1802) (Coleoptera: Cryptophagidae), new species for Portugal, Dolichopodidae of Portugal - dataset 2009-2018, INSDC Sequences, VectorDistributionStatus, The InBIO Barcoding Initiative Database: Diptera 01, VectorCollection_SIVIZ_project_Portugal, Chillcottomyia Saigusa new to Europe (Diptera, Empidoidea, Hybotidae), VectorNet observations, Medetera species with multi-coloured eyes in southern Europe, The InBIO Barcoding Initiative Database: Diptera 03 - Further records on Portuguese Limoniidae, Pediciidae and Tipulidae, The West-Palearctic species of the genus Tonnoiriella Vaillant, 1971 (Diptera: Psychodidae, Psychodinae), Revision of the morphology, phylogenetic relationships, behaviour and diversity of the Iberian and Italian ant-like Tachydromia Meigen, 1803 (Diptera: Hybotidae))",
 "Geometry POLYGON((-8.55156 40.99529,-7.98386 40.99529,-7.98386 41.41535,-8.55156 41.41535,-8.55156 40.99529))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Diptera",
 "Year 2006-2026"
 ]
}

 The dataset includes 1100 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001779-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.m644b82
title: Data from: Micro or macroscale? Which one best predicts the establishment of an endemic Atlantic Forest palm?

description: Historically, macroecology and microecology have diverged with regards to
 the niche concept. A better understanding of functioning ecological
 systems, however, depends on an integrative approach to this concept at
 different spatial scales. A mixed approach, merging macro and microscale
 by validating Ecological Niche Modeling (ENM) with the results of in situ
 experiments and environmental data collection, was used to understand if
 areas identified by ENM as highly suitable for adult palms are also
 adequate for seedling establishment. Syagrus weddelliana’s (Arecaceae)
 distribution range falls within the Atlantic Rain Forest, and more
 specifically Serra dos Órgãos region (Rio de Janeiro state), southeastern
 Brazil. The following steps were performed: (1) ENM to delimit the area of
 occurrence of S. weddelliana and locate experimental areas; (2) a seed
 sowing experiment in areas with presence or absence of the species in
 areas of high or low environmental suitability at 36 experimental
 stations; and (3) characterization of each microhabitat which was related
 back to the macro-scale results of ENM. Evidence of biotic and abiotic
 limitations was found for S. weddelliana distribution. Areas of higher
 suitability had lower seed predation rates and, consequently, higher seed
 germination rates. On the other hand, areas with low environmental
 suitability at the macroscale were divided in two types: areas with
 microhabitat similar to that of areas with high environmental suitability
 that had some germination despite high predation and areas with different
 environmental conditions that had no germination and high predation rates.
 Seedlings and adults had different abiotic requirements. Microhabitat
 conditions were more important for the initial establishment of S.
 weddelliana than macroclimatic variables. This finding demonstrates that
 macro and microecological information work in a complementary way to a
 better understanding of the distribution of S. weddelliana.
description: data Oda et
 al.xlsxdataset-file
DOI: 10.5061/dryad.t2t00m0
title: Data from: The response of mixed-species bird flocks to anthropogenic disturbance and elevational variation in southwest China

description: Avian mixed-species flocks (MSFs) are an important example of species
 interactions threatened by the biodiversity crisis. They are found
 throughout the world in forested habitats, but are generally reduced in
 size or frequency by human disturbance. In southern China, a unique MSF
 system has been described that is led by fulvettas (Alcippe morrisonia, A.
 hueti and A. davidi). Our objective was to understand how this system is
 distributed across elevational gradients, especially moving west into the
 Hengduan Mountains, and how it responds to human disturbance. We sampled
 leadership and composition of 375 MSFs over 2 years in and surrounding 5
 nature reserves in Guangxi Zhuang Autonomous Region and Yunnan Province,
 with transects placed in different land use types – protected forest,
 buffer areas, or agriculture – and ranging from 400 to 3200 m. We also
 sampled birds outside of MSFs. We found MSFs led by fulvettas (A.
 fratercula and A. davidi) in forests across the region up to 2900 m.
 Elevation was not a significant influence on MSF size or prevalence in
 models that also included land use. We found that MSFs were encountered at
 only 1/3 of the frequency in agriculture as in forest, and had strongly
 different composition and leadership. Although MSFs in buffer areas more
 similar to those in forest, birds in buffer had lower flocking propensity
 with different flock leaders and less complex social networks. In
 particular, buffer transects that were seeded pine had low numbers of
 fulvetta-led MSFs and forest specialists. In the future, it is important
 to understand which vegetational characteristics allow MSFs, particularly
 fulvetta-led MSFs, to persist in buffer habitats.
description: Flock
 DatabaseThe species composition
 of 375 mixed-species flocks sampled in the study.Final Flock database for Zhou
 et al. 2019.xlsxPropensity and Encounter
 Rate DataThe flocking propensity
 (% of individuals in mixed-species flocks) and flock encounter rate for
 all the transects sampled during the study.Final Propensity and Encounter
 Rate data for Zhou et al. 2019.xlsx
DOI: 10.15468/dl.59m4tj
title: Occurrence Download

description: A dataset containing 7848 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((9.87252 49.74261,10.00654 49.74261,10.00654 49.8239,9.87252 49.8239,9.87252 49.74261))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 2010-2020"
 ]
}

 The dataset includes 7848 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001775-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.jc5745v
title: Data from: Adhesive latching and legless leaping in small, worm-like insect larvae

description: Jumping is often achieved using propulsive legs, yet legless leaping has
 evolved multiple times. We examined the kinematics, energetics, and
 morphology of long-distance jumps produced by the legless larvae of gall
 midges (Asphondylia sp.). They store elastic energy by forming their body
 into a loop and pressurizing part of their body to form a transient leg.
 They prevent movement during elastic loading by placing two regions
 covered with microstructures against each other, which likely serve as a
 newly-described adhesive latch. Once the latch releases, the transient leg
 launches the body into the air. Their average takeoff speeds (mean: 0.85 m
 s-1; range: 0.39-1.27 m s-1) and horizontal travel distances (up to 36
 times body length or 121 mm) rival those of legged insect jumpers and
 their mass specific power density (mean: 910 W kg-1; range: 150-2420 W
 kg-1) indicates the use of elastic energy storage to launch the jump.
 Based on the forces reported for other microscale adhesive structures, the
 adhesive latching surfaces are sufficient to oppose the loading forces
 prior to jumping. Energetic comparisons of insect larval crawling versus
 jumping indicate that these jumps are orders of magnitude more efficient
 than would be possible if the animals had crawled an equivalent distance.
 These discoveries integrate three vibrant areas in engineering and biology
 - soft robotics, small, high acceleration systems, and adhesive systems -
 and point toward a rich, and as-yet untapped area of biological diversity
 of worm-like, small, legless jumpers.
description: Centroid Data for high
 speed images of jumps: csvstoanalyzeThese data track the
 centroid of each jump and are read by the R files to gather scaling
 information about image, frame rate, etc.csvstoanalyze.zipAnimal sizes and IDs: IDsandsizesforcsvstoanalyzeThis spreadsheet includes the necessary information about individual sizes to be used by the R code to calculate energetics, etc.IDsandsizesforcsvstoanalyze.csvRcode with ballistics equation: ballisticequationformidgejumps_043019This Rcode takes the midge data and applies the ballistics equation to back out takeoff speed, as well as calculate cost of transport.ballisticequationformidgejumps_043019.RMidgeTabletopJumpDistancesThis spreadsheet includes the data from horizontal jump distance experiments.LoadingPhaseDataThis spreadsheet includes the data taken from high speed videos to calculate loading phases prior to gall midge jumps.Gallmidge_dataanalysiscodeThis R code includes all of the kinematic and statistical analyses used in this study. The code pulls the data files also included in this repository and automatically analyzes the raw kinematic and body size datasets.midgecodeFINAL070119_markdown.Rmd
DOI: 10.5061/dryad.dn61nt7
title: Data from: Constraints on song type matching in a songbird

description: In an eastern population of song sparrows (Melospiza melodia), song type
 matching occurs at above chance levels but does not signal aggressiveness.
 One explanation for the apparent ineffectiveness of matching as a signal
 is that the occurrence of matching is constrained by internal rules for
 ordering the production of song types. This constraint hypothesis is
 tested here in an experiment in which the singing of territorial male song
 sparrows is monitored in the field in real time, and subjects are
 confronted with playback of one of their song types either immediately
 after switching away from that type (short delay) or after having cycled
 through much of their repertoire since last singing that type (long
 delay). Matching was not significantly more likely in the long delay
 treatment than in the short delay treatment. The probability of matching
 did, however, depend significantly on prior bout length: the longer was a
 singer’s last bout of a song type, the less likely the singer was to match
 it. There was also a suggestive effect of frequency of usage: males were
 more likely to match a song type the more frequently they normally sang
 that type, though this result was not significant after correcting for
 multiple comparisons. Thus, internal rules on how songs are sequenced
 exert constraints on the occurrence of song type matching, and such
 constraints can help to explain the apparent ineffectiveness of matching
 as a signal in this study population.
description: Searcy et al matching
 dataData from the song type
 matching experiment with song sparrows. Bird ID gives a numerical
 designation for each subject plus either a color band combination or a
 specification of the site. Rep Size is the song type repertoire size of
 the individual. Treatment is either a short delay between the
 subject's singing the target song that triggered playback (one
 type-switch) or a long delay (3-4 type-switches). Date is relative to May
 21. Trans Freq (transition frequency) is the frequency in the previous
 repertoire recordings of the song type transition needed to produce a
 match. Type Freq is the frequency with which the subject sang the playback
 song type during the repertoire recordings. Prior bout length is the
 number of repetitions of the target song used for playback that the
 subject produced in the bout of the target song that triggered
 playback.
DOI: 10.7914/0cc4-x008
title: Patua geothermal network

description: The Patua seismic network is an array of surface and borehole instruments intended to monitor seismicity at the power-producing Patua geothermal field.