cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25951002
title: Versatile Descent Algorithms for Group Regularization and Variable Selection in Generalized Linear Models

description: This article proposes an adaptively bounded gradient descent (ABGD) algorithm for group elastic net penalized regression. Unlike previously proposed algorithms, the proposed algorithm adaptively bounds the Fisher information matrix, which results in a flexible and stable computational framework. In particular, the proposed algorithm (i) does not require orthogonalization of the predictors, and (ii) can be easily applied to any combination of exponential family response distribution and link function. The proposed algorithm is implemented in the grpnet R package (available from CRAN), which implements the approach for common response distributions (Gaussian, binomial, and Poisson), as well as several response distributions not previously considered in the group penalization literature (i.e., multinomial, negative binomial, gamma, and inverse Gaussian). Simulated and real data examples demonstrate that the proposed algorithm is as or more efficient than existing methods for Gaussian, binomial, and Poisson distributions. Furthermore, using two genomic examples, I demonstrate how the proposed algorithm can be applied to high-dimensional multinomial regression problems with grouped predictors. R code to reproduce the results is included as supplementary materials.
DOI: 10.6084/m9.figshare.25951002.v1
title: Versatile Descent Algorithms for Group Regularization and Variable Selection in Generalized Linear Models

description: This article proposes an adaptively bounded gradient descent (ABGD) algorithm for group elastic net penalized regression. Unlike previously proposed algorithms, the proposed algorithm adaptively bounds the Fisher information matrix, which results in a flexible and stable computational framework. In particular, the proposed algorithm (i) does not require orthogonalization of the predictors, and (ii) can be easily applied to any combination of exponential family response distribution and link function. The proposed algorithm is implemented in the grpnet R package (available from CRAN), which implements the approach for common response distributions (Gaussian, binomial, and Poisson), as well as several response distributions not previously considered in the group penalization literature (i.e., multinomial, negative binomial, gamma, and inverse Gaussian). Simulated and real data examples demonstrate that the proposed algorithm is as or more efficient than existing methods for Gaussian, binomial, and Poisson distributions. Furthermore, using two genomic examples, I demonstrate how the proposed algorithm can be applied to high-dimensional multinomial regression problems with grouped predictors. R code to reproduce the results is included as supplementary materials.
DOI: 10.15468/dl.7ytah8
title: Occurrence Download

description: A dataset containing 278861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-06-22",
 "EventDate is less than or equal to 2024-07-22",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 278861 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028183-240626123714530/datasets/export for details.
DOI: 10.25934/pr00004211.0
title: Available IPD datapackage for study 'First-Line Therapy with Gemcitabine and Paclitaxel in Locally Recurrent or Metastatic Breast Cancer: A Phase II Study'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.15468/dl.ux27wt
title: Occurrence Download

description: A dataset containing 21961639 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Literature Occurrence, Specimen, Unknown evidence, Machine Observation)",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2020",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21961639 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028191-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26321968
title: SH2 domain related data by CoDIAC analysis

description: CoDIAC-derived data is included in this archive, including the reference human SH2-ome, annotated structures from PDB and AlphaFold, post-translational modifications, contact map features, mutations, etc.
DOI: 10.15468/dl.paxn8m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ucides cordatus (Linnaeus, 1763)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028220-240626123714530/datasets/export for details.
DOI: 10.15468/dl.m98u6y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Dermacentor albipictus Packard, 1869"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028219-240626123714530/datasets/export for details.
DOI: 10.15468/dl.r9yz43
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "TaxonKey is Anogeissus leiocarpa (DC.) Guill. & Perr.",
 "Year 1901-2024"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028221-240626123714530/datasets/export for details.
DOI: 10.25919/jaae-vc35
title: Four-wire low voltage power network dataset

description: In most existing low voltage network datasets, the impedance data is approximate, with the following two approximations being commonly applied:
1. a Kron-reduction, which assumes that the neutral wire is grounded everywhere;
2. discarding off-diagonal elements of the series impedance matrix in sequence coordinates.

This dataset, contains four-wire variants of low voltage networks for power flow simulation purposes. This means the impedance matrices associate with the lines have size 4x4 and are defined in the wire coordinate space.

Furthermore, it contains approximations derived from the four-wire network models, with 3x3 impedance matrices, including Kron-reduced, phase-to-neutral, and modified-phase-to-neutral transformations.
DOI: 10.15468/dl.dbw3xs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Dermacentor variabilis Say, 1821"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028222-240626123714530/datasets/export for details.
DOI: 10.15468/dl.mubggg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ixodes scapularis Say, 1821"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028224-240626123714530/datasets/export for details.
DOI: 10.15468/dl.7dtf4f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028223-240626123714530/datasets/export for details.
DOI: 10.15468/dl.8gyewn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Erythrolamprus carajasensis (Da Cunha, Nascimento & Avila-Pires, 1985)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028225-240626123714530/datasets/export for details.
DOI: 10.15468/dl.q4bm5n
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028226-240626123714530/datasets/export for details.
DOI: 10.15468/dl.y2jenb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Centrolene notostictum Ruiz-Carranza & Lynch, 1991"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028227-240626123714530/datasets/export for details.
DOI: 10.15468/dl.ch69ka
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Erythrolamprus almadensis (Wagler, 1824)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028230-240626123714530/datasets/export for details.
DOI: 10.15468/dl.peqn3b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phacelia distans Benth.",
 "Year 1924-2024"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028229-240626123714530/datasets/export for details.
DOI: 10.15139/s3/r7soyx
title: Sena U19 Lancet Microbe Paper Public Dataset

description: Dataset for the Sena U19 Lancet Microbe Paper: "Clinical and genomic diversity of Treponema pallidum subspecies pallidum to inform vaccine research: an international, molecular epidemiology study". Published in 2024.
DOI: 10.15468/dl.t297n9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Norops brasiliensis (Vanzolini & Williams, 1970)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028233-240626123714530/datasets/export for details.
DOI: 10.15468/dl.9mpptz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation, Material sample)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudoboa nigra (Duméril, Bibron & Duméril, 1854)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028234-240626123714530/datasets/export for details.
DOI: 10.18150/ces8hv
title: MS553_k2_P2_10_2 - raw diffraction data: Crystals of synthetic supramolecular peptidic capsules based on the scaffold of calix[4] resorcinarene

description: Raw diffraction data collected at P13 beamline, PetraIII EMBL Hamburg: crystals of synthetic supramolecular peptidic capsules based on the scaffold of calix[4]resorcinarene, sample MS553_k2_P2_10_2.
DOI: 10.15468/dl.95gj3y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centrolene notostictum Ruiz-Carranza & Lynch, 1991"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028235-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.12764715
title: Areas of interest for spatial planning in the northern Gulf of Mexico

description: Twelve areas of interest greater than 100 km2, presenting relatively high modeled cold-water coral diversity, and located outside a four-kilometer zone of potential influence from oil and gas infrastructure were delineated and deemed of interest for further exploration and spatial planning.
DOI: 10.5281/zenodo.12764716
title: Areas of interest for spatial planning in the northern Gulf of Mexico

description: Twelve areas of interest greater than 100 km2, presenting relatively high modeled cold-water coral diversity, and located outside a four-kilometer zone of potential influence from oil and gas infrastructure were delineated and deemed of interest for further exploration and spatial planning.
DOI: 10.15468/dl.hruq4e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phacelia crenulata Torr. ex S.Watson"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028236-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.12764159
title: The early evolution of the BA.2.86 VOI sheds light on the origins of highly divergent SARS-CoV-2 lineages

description: Alignments corresponding to the D1-D4.1 datasets. Five different datasets (named here D1, D2, D3, D4 and D4.4) comprising complete SARS-CoV-2 genomes (low-coverage excluded, Ns ≤ 5%) were compiled from assemblies retrieved from GISAID. Genomes within these datasets were collated at different time points, aligned and sequentially subsampled under a phylogenetically-informed approach.
DOI: 10.5281/zenodo.12764160
title: The early evolution of the BA.2.86 VOI sheds light on the origins of highly divergent SARS-CoV-2 lineages

description: Alignments corresponding to the D1-D4.1 datasets. Five different datasets (named here D1, D2, D3, D4 and D4.4) comprising complete SARS-CoV-2 genomes (low-coverage excluded, Ns ≤ 5%) were compiled from assemblies retrieved from GISAID. Genomes within these datasets were collated at different time points, aligned and sequentially subsampled under a phylogenetically-informed approach.
DOI: 10.15468/dl.ycvz4a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stanleya pinnata (Pursh) Britton",
 "Year 1924-2024"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028238-240626123714530/datasets/export for details.
DOI: 10.15468/dl.cssqzn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Occurrence evidence, Living Specimen, Specimen, Material citation, Material sample, Human Observation, Machine Observation)",
 "GadmGid is BOL.4_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028240-240626123714530/datasets/export for details.
DOI: 10.15468/dl.jajdwe
title: Occurrence Download

description: A dataset listing the 0 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "Geometry POLYGON((-84.6893 10.36077,-84.54818 10.36077,-84.54818 10.46706,-84.6893 10.46706,-84.6893 10.36077))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 0 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028218-240626123714530/datasets/export for details.
DOI: 10.15468/dl.s36esj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phacelia tanacetifolia Benth.",
 "Year 1924-2024"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028241-240626123714530/datasets/export for details.
DOI: 10.15468/dl.jn8kfg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ucides cordatus (Linnaeus, 1763)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028242-240626123714530/datasets/export for details.
DOI: 10.15468/dl.5e5ytv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypericum perforatum L."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028232-240626123714530/datasets/export for details.
DOI: 10.5517/ccdc.csd.cc24jjqy
title: CCDC 1982100: Experimental Crystal Structure Determination

description: Related Article: A. Tesouro Vallina, H. Stoeckli-Evans|2020|Acta Crystallogr.,Sect.E:Cryst.Commun.|76|410|doi:10.1107/S2056989020001644
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24g6ys
title: CCDC 1979875: Experimental Crystal Structure Determination

description: Related Article: Tina P. Andrejević, Beata Warżajtis, Biljana Đ. Glišić, Sandra Vojnovic, Marija Mojicevic, Nevena Lj. Stevanović, Jasmina Nikodinovic-Runic, Urszula Rychlewska, Miloš I. Djuran|2020|J.Inorg.Biochem.|208|111089|doi:10.1016/j.jinorgbio.2020.111089
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24g70w
title: CCDC 1979877: Experimental Crystal Structure Determination

description: Related Article: Tina P. Andrejević, Beata Warżajtis, Biljana Đ. Glišić, Sandra Vojnovic, Marija Mojicevic, Nevena Lj. Stevanović, Jasmina Nikodinovic-Runic, Urszula Rychlewska, Miloš I. Djuran|2020|J.Inorg.Biochem.|208|111089|doi:10.1016/j.jinorgbio.2020.111089
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24lsbw
title: CCDC 1984258: Experimental Crystal Structure Determination

description: Related Article: Chunhua Tony Hu|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24lscx
title: CCDC 1984259: Experimental Crystal Structure Determination

description: Related Article: Chunhua Tony Hu|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24lsdy
title: CCDC 1984260: Experimental Crystal Structure Determination

description: Related Article: Chunhua Tony Hu|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24lsg0
title: CCDC 1984262: Experimental Crystal Structure Determination

description: Related Article: Chunhua Tony Hu|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24lsh1
title: CCDC 1984263: Experimental Crystal Structure Determination

description: Related Article: Chunhua Tony Hu|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24lsl4
title: CCDC 1984266: Experimental Crystal Structure Determination

description: Related Article: Chunhua Tony Hu|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.