cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kr3ckw
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Theloderma annae Nguyen, Pham, Nguyen, Ngo & Ziegler, 2016"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0300234-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pumn3d
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Furcasteridae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017280-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9a2u3
title: Occurrence Download

description: A dataset listing the 10475 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is EOD – eBird Observation Dataset"
 ]
}

 The dataset's 10475 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232283-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2xb8y
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ophiurinidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017306-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fkukd6
title: Occurrence Download

description: A dataset containing 45231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-27.07031 28.16888,4.39453 36.53612,48.33984 33.95247,39.90234 72.47858,-26.54297 67.97875,-27.07031 28.16888))",
 "HasGeospatialIssue is false",
 "TaxonKey is Marasmius Fr., 1836"
 ]
}

 The dataset includes 45231 records from 247 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0285528-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c57sb3
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vanilla sumatrana J.J.Sm."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027506-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89mc6z
title: Occurrence Download

description: A dataset containing 3061 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phrynosoma coronatum (Blainville, 1835)"
 ]
}

 The dataset includes 3061 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0285511-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r664t5
title: Occurrence Download

description: A dataset listing the 44739 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chromista"
 ]
}

 The dataset's 44739 records were derived from 8097 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027473-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/rxg3up
title: slice01931.tif

description: :unav
DOI: 10.13145/bacdive120512.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/kmpqrz
title: slice01416.tif

description: :unav
DOI: 10.57745/yyntt2
title: slice00131.tif

description: :unav
DOI: 10.57745/uxa14x
title: slice00823.tif

description: :unav
DOI: 10.57745/xmjrtp
title: slice01494.tif

description: :unav
DOI: 10.13145/bacdive120513.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/24ana6
title: slice01429.tif

description: :unav
DOI: 10.57745/ypx3hy
title: slice00292.tif

description: :unav
DOI: 10.13145/bacdive120514.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/qasncg
title: slice01749.tif

description: :unav
DOI: 10.57745/xseio3
title: slice00983.tif

description: :unav
DOI: 10.13145/bacdive120515.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/wcmsob
title: slice00891.tif

description: :unav
DOI: 10.57745/xgpft3
title: slice01892.tif

description: :unav
DOI: 10.13145/bacdive120516.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/6lr5dl
title: slice00977.tif

description: :unav
DOI: 10.57745/o1xa6h
title: slice01400.tif

description: :unav
DOI: 10.13145/bacdive120517.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/0canoq
title: slice01808.tif

description: :unav
DOI: 10.57745/ysjt9k
title: slice00819.tif

description: :unav
DOI: 10.57745/ktozg5
title: slice00171.tif

description: :unav
DOI: 10.57745/kv4riv
title: slice01688.tif

description: :unav
DOI: 10.57745/w45onp
title: slice00814.tif

description: :unav
DOI: 10.13145/bacdive120518.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/2bo2im
title: slice01513.tif

description: :unav
DOI: 10.57745/k4nae8
title: slice00219.tif

description: :unav
DOI: 10.13145/bacdive120519.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/pvfkqy
title: slice01805.tif

description: :unav
DOI: 10.57745/shv690
title: slice00180.tif

description: :unav
DOI: 10.13145/bacdive120520.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/6wntss
title: slice01234.tif

description: :unav
DOI: 10.57745/abbmct
title: slice00647.tif

description: :unav
DOI: 10.57745/tmrznh
title: slice01643.tif

description: :unav
DOI: 10.13145/bacdive120521.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/araiec
title: slice01543.tif

description: :unav
DOI: 10.57745/pypmtt
title: slice00253.tif

description: :unav
DOI: 10.13145/bacdive120522.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/bn8cyf
title: slice01942.tif

description: :unav
DOI: 10.57745/bn9rs8
title: slice00714.tif

description: :unav
DOI: 10.13145/bacdive120523.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/7s30n1
title: slice00227.tif

description: :unav
DOI: 10.57745/jjqhiw
title: slice01406.tif

description: :unav
DOI: 10.57745/er2mxe
title: slice01260.tif

description: :unav
DOI: 10.57745/ojxi0t
title: slice00384.tif

description: :unav
DOI: 10.13145/bacdive120524.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/byg3it
title: slice00968.tif

description: :unav
DOI: 10.57745/wxebme
title: slice01670.tif

description: :unav
DOI: 10.13145/bacdive120525.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/5w8gfo
title: slice00093.tif

description: :unav
DOI: 10.57745/m42vki
title: slice01858.tif

description: :unav
DOI: 10.13145/bacdive120526.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/gwgc3g
title: slice01289.tif

description: :unav
DOI: 10.57745/r9eewl
title: slice00839.tif

description: :unav
DOI: 10.13145/bacdive120527.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/0foghg
title: slice01008.tif

description: :unav
DOI: 10.57745/v7sxzw
title: slice00894.tif

description: :unav
DOI: 10.13145/bacdive120528.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/podnoh
title: slice00197.tif

description: :unav
DOI: 10.57745/xibcrq
title: slice01829.tif

description: :unav
DOI: 10.57745/ciqq24
title: slice01500.tif

description: :unav
DOI: 10.57745/wrintu
title: slice00759.tif

description: :unav
DOI: 10.13145/bacdive120529.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.14610769
title: SUPPLEMENT: DisCo P-ad: Distance Correlation-Based p-Value Adjustment Enhances Multiple-Testing Corrections for Metabolomics

description: Correcting for multiple-testing is critical for high-dimensional omics studies, such as genomics and metabolomics, where there are numerous measurements per sample. One strategy is to estimate the number of statistically independent tests, called the effective number of tests, based on the eigen-analysis of the correlation matrix between the features. This effective number is then used for a subsequent single-step adjustment to obtain the pointwise significance level. Such practice is commonplace in Genome-Wide Association Studies (GWAS) but is also becoming increasingly relevant to Metabolome-Wide Association Studies (MWAS). However, many procedures for estimating the effective number of tests may be too conservative or too lenient, only assume a linear association between features, or have not been evaluated on metabolomics data. Therefore, we propose a modification to the p-value adjustment based on a more general measure of association between two predictors, the Distance Correlation, with specific focus on MWAS. We assessed common GWAS \textit{p}-value adjustment procedures and one tailored for MWAS, which rely on eigen-analysis of the Pearson's correlation matrix. Our study, including varying sample size-to-feature ratios, response types, and metabolite groupings, highlights the superior performance of the Distance Correlation. We introduce the Distance Correlation-based p-value adjustment (DisCo P-ad) as a novel modification that can enhance existing eigen-analysis based procedures by increasing power or reducing false positives. While our focus is on metabolomics, DisCo P-ad can readily be applied to other high-dimensional omics studies.

 

Keywords: Multiple-testing; Effective number of tests; Correlated tests; Eigen-analysis; Pointwise error rate; Metabolome-wide association study
DOI: 10.57745/93weg1
title: slice01895.tif

description: :unav
DOI: 10.57745/dnv7gi
title: slice00174.tif

description: :unav
DOI: 10.13145/bacdive120530.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.14057773
title: SUPPLEMENT: DisCo P-ad: Distance Correlation-Based p-Value Adjustment Enhances Multiple-Testing Corrections for Metabolomics

description: Correcting for multiple-testing is critical for high-dimensional omics studies, such as genomics and metabolomics, where there are numerous measurements per sample. One strategy is to estimate the number of statistically independent tests, called the effective number of tests, based on the eigen-analysis of the correlation matrix between the features. This effective number is then used for a subsequent single-step adjustment to obtain the pointwise significance level. Such practice is commonplace in Genome-Wide Association Studies (GWAS) but is also becoming increasingly relevant to Metabolome-Wide Association Studies (MWAS). However, many procedures for estimating the effective number of tests may be too conservative or too lenient, only assume a linear association between features, or have not been evaluated on metabolomics data. Therefore, we propose a modification to the p-value adjustment based on a more general measure of association between two predictors, the Distance Correlation, with specific focus on MWAS. We assessed common GWAS \textit{p}-value adjustment procedures and one tailored for MWAS, which rely on eigen-analysis of the Pearson's correlation matrix. Our study, including varying sample size-to-feature ratios, response types, and metabolite groupings, highlights the superior performance of the Distance Correlation. We introduce the Distance Correlation-based p-value adjustment (DisCo P-ad) as a novel modification that can enhance existing eigen-analysis based procedures by increasing power or reducing false positives. While our focus is on metabolomics, DisCo P-ad can readily be applied to other high-dimensional omics studies.

 

Keywords: Multiple-testing; Effective number of tests; Correlated tests; Eigen-analysis; Pointwise error rate; Metabolome-wide association study
DOI: 10.5281/zenodo.14605224
title: SUPPLEMENT: DisCo P-ad: Distance Correlation-Based p-Value Adjustment Enhances Multiple-Testing Corrections for Metabolomics

description: Correcting for multiple-testing is critical for high-dimensional omics studies, such as genomics and metabolomics, where there are numerous measurements per sample. One strategy is to estimate the number of statistically independent tests, called the effective number of tests, based on the eigen-analysis of the correlation matrix between the features. This effective number is then used for a subsequent single-step adjustment to obtain the pointwise significance level. Such practice is commonplace in Genome-Wide Association Studies (GWAS) but is also becoming increasingly relevant to Metabolome-Wide Association Studies (MWAS). However, many procedures for estimating the effective number of tests may be too conservative or too lenient, only assume a linear association between features, or have not been evaluated on metabolomics data. Therefore, we propose a modification to the p-value adjustment based on a more general measure of association between two predictors, the Distance Correlation, with specific focus on MWAS. We assessed common GWAS \textit{p}-value adjustment procedures and one tailored for MWAS, which rely on eigen-analysis of the Pearson's correlation matrix. Our study, including varying sample size-to-feature ratios, response types, and metabolite groupings, highlights the superior performance of the Distance Correlation. We introduce the Distance Correlation-based p-value adjustment (DisCo P-ad) as a novel modification that can enhance existing eigen-analysis based procedures by increasing power or reducing false positives. While our focus is on metabolomics, DisCo P-ad can readily be applied to other high-dimensional omics studies.

 

Keywords: Multiple-testing; Effective number of tests; Correlated tests; Eigen-analysis; Pointwise error rate; Metabolome-wide association study
DOI: 10.5281/zenodo.14605307
title: SUPPLEMENT: DisCo P-ad: Distance Correlation-Based p-Value Adjustment Enhances Multiple-Testing Corrections for Metabolomics

description: Correcting for multiple-testing is critical for high-dimensional omics studies, such as genomics and metabolomics, where there are numerous measurements per sample. One strategy is to estimate the number of statistically independent tests, called the effective number of tests, based on the eigen-analysis of the correlation matrix between the features. This effective number is then used for a subsequent single-step adjustment to obtain the pointwise significance level. Such practice is commonplace in Genome-Wide Association Studies (GWAS) but is also becoming increasingly relevant to Metabolome-Wide Association Studies (MWAS). However, many procedures for estimating the effective number of tests may be too conservative or too lenient, only assume a linear association between features, or have not been evaluated on metabolomics data. Therefore, we propose a modification to the p-value adjustment based on a more general measure of association between two predictors, the Distance Correlation, with specific focus on MWAS. We assessed common GWAS \textit{p}-value adjustment procedures and one tailored for MWAS, which rely on eigen-analysis of the Pearson's correlation matrix. Our study, including varying sample size-to-feature ratios, response types, and metabolite groupings, highlights the superior performance of the Distance Correlation. We introduce the Distance Correlation-based p-value adjustment (DisCo P-ad) as a novel modification that can enhance existing eigen-analysis based procedures by increasing power or reducing false positives. While our focus is on metabolomics, DisCo P-ad can readily be applied to other high-dimensional omics studies.

 

Keywords: Multiple-testing; Effective number of tests; Correlated tests; Eigen-analysis; Pointwise error rate; Metabolome-wide association study
DOI: 10.57745/1d97rr
title: slice01425.tif

description: :unav
DOI: 10.57745/yrfik1
title: slice00708.tif

description: :unav
DOI: 10.13145/bacdive120531.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/h9d32m
title: slice01439.tif

description: :unav
DOI: 10.57745/wmagcx
title: slice00984.tif

description: :unav
DOI: 10.13145/bacdive120532.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/5404mn
title: slice00278.tif

description: :unav
DOI: 10.57745/vdwvt9
title: slice01969.tif

description: :unav
DOI: 10.13145/bacdive120533.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/dafcnl
title: slice01423.tif

description: :unav
DOI: 10.57745/flhwwh
title: slice00541.tif

description: :unav
DOI: 10.13145/bacdive120534.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/djy2jz
title: slice01338.tif

description: :unav
DOI: 10.57745/opzamd
title: slice00386.tif

description: :unav
DOI: 10.57745/47fhoq
title: slice01262.tif

description: :unav
DOI: 10.57745/7bnb9b
title: slice00059.tif

description: :unav
DOI: 10.57745/jthmou
title: slice01169.tif

description: :unav
DOI: 10.13145/bacdive120535.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/0cugnp
title: slice00551.tif

description: :unav
DOI: 10.57745/hamp70
title: slice00143.tif

description: :unav
DOI: 10.57745/pnolxf
title: slice01549.tif

description: :unav
DOI: 10.13145/bacdive120536.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/n5frb1
title: slice01782.tif

description: :unav
DOI: 10.57745/nb0wuw
title: slice00194.tif

description: :unav
DOI: 10.13145/bacdive120537.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/ctlr8b
title: slice01053.tif

description: :unav
DOI: 10.57745/jsgwj1
title: slice00119.tif

description: :unav
DOI: 10.13145/bacdive120538.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/0yrium
title: slice01129.tif

description: :unav
DOI: 10.57745/8xewtb
title: slice01397.tif

description: :unav
DOI: 10.57745/gx1p9f
title: slice00259.tif

description: :unav
DOI: 10.13145/bacdive120539.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/2ckh4r
title: slice00992.tif

description: :unav
DOI: 10.57745/c9ix9q
title: slice00892.tif

description: :unav
DOI: 10.57745/pkc2se
title: slice01466.tif

description: :unav
DOI: 10.57745/ws8snk
title: slice01175.tif

description: :unav
DOI: 10.13145/bacdive120540.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/lhticx
title: slice00002.tif

description: :unav
DOI: 10.57745/wnew32
title: slice01764.tif

description: :unav
DOI: 10.57745/8vfjke
title: slice00636.tif

description: :unav
DOI: 10.57745/ghq8lo
title: slice01533.tif

description: :unav
DOI: 10.57745/petf9n
title: slice01117.tif

description: :unav
DOI: 10.57745/yrggtd
title: slice01434.tif

description: :unav
DOI: 10.13145/bacdive120541.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/c57uhb
title: slice00995.tif

description: :unav
DOI: 10.57745/mftcmx
title: slice01042.tif

description: :unav
DOI: 10.57745/vvqdri
title: slice00764.tif

description: :unav
DOI: 10.13145/bacdive120542.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57745/atfnkz
title: slice01542.tif

description: :unav