cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.j8r08
title: Data from: Climate, invasive species and land use drive population dynamics of a cold-water specialist

description: Climate change is an additional stressor in a complex suite of threats
 facing freshwater biodiversity, particularly for cold-water fishes.
 Research addressing the consequences of climate change on cold-water fish
 has generally focused on temperature limits defining spatial
 distributions, largely ignoring how climatic variation influences
 population dynamics in the context of other existing stressors. We used
 long-term data from 92 populations of bull trout Salvelinus confluentus –
 one of North America's most cold-adapted fishes – to quantify
 additive and interactive effects of climate, invasive species and land use
 on population dynamics (abundance, variability and growth rate).
 Populations were generally depressed, more variable and declining where
 spawning and rearing stream habitat was limited, invasive species and land
 use were prevalent and stream temperatures were highest. Increasing stream
 temperature acted additively and independently, whereas land use and
 invasive species had additive and interactive effects (i.e. the impact of
 one stressor depended on exposure to the other stressor). Most (58%–78%)
 of the explained variation in population dynamics was attributed to the
 presence of invasive species, differences in life history and management
 actions in foraging habitats in rivers, lakes and reservoirs. Although
 invasive fishes had strong negative effects on populations in foraging
 habitats, proactive control programmes appeared to effectively temper
 their negative impact. Synthesis and applications. Long-term demographic
 data emphasize that climate warming will exacerbate imperilment of
 cold-water specialists like bull trout, yet other stressors – especially
 invasive fishes – are immediate threats that can be addressed by proactive
 management actions. Therefore, climate-adaptation strategies for
 freshwater biodiversity should consider existing abiotic and biotic
 stressors, some of which provide potential and realized opportunity for
 conservation of freshwater biodiversity in a warming world.
description: Data from: Climate,
 invasive species and land-use drive population dynamics of a cold-water
 specialistThe attached spreadsheet
 includes the raw redd counts for 92 bull trout populations (sheet 1) and
 the raw environmental data for the streams in those populations inhabit
 (sheet 2). These data are sufficient to replicate all analyses in the
 associated manuscript.JApplEcol_Kovach_2016.xlsx
DOI: 10.5061/dryad.k9m17
title: Data from: Interprofessional online learning for primary healthcare: findings from a scoping review

description: Objectives: This article presents the findings from a scoping review which
 explores the nature of interprofessional online learning in primary health
 care. The review was informed by the following questions: What is the
 nature of evidence on online postgraduate education for primary health
 care interprofessional teams? What learning approaches and study methods
 are used in this context? What is the range of reported outcomes for
 primary health care learners, their organisations and the care they
 deliver to patients/clients? Setting: The review explored the global
 literature on interprofessional online learning in primary health care
 settings. Participants: n/a Primary and secondary outcome measures: n/a
 Results: The review found that the 23 included studies employed a range of
 different e-learning methods with contrasting course durations, use of
 theory, participant mix, approaches to accreditation and assessment of
 learning. Most of the included studies reported outcomes associated with
 learner reactions and positive changes in participant
 attitudes/perceptions and improvement in knowledge/skills as a result of
 engagement in an e-learning course. In contrast, fewer studies reported
 changes in participant behaviours, changes in organisational practice and
 improvements to patients/clients. Conclusions: A number of educational,
 methodological and outcome implications could be offered. E-learning
 enhances education experience, supports development, eases time
 constraints, overcomes geographic limitations and offers greater
 flexibility. However it also contributes to the isolation of learners and
 its benefits can be negated by technical problems.
description: Iheed
 posterPoster which outlined
 the study and was used in conference proceedingsAbstraction
 collationThe abstraction
 information for the 23 included papers in our scoping
 review
DOI: 10.5061/dryad.k3h00
title: Data from: On the existence of non-microbiotherian Australidelphian marsupials (Diprotodontia) in the Eocene of Patagonia

description: A diverse assemblage of extinct mammals of early–middle Eocene age
 (Ypresian–Lutetian boundary) come from the Patagonian localities of La
 Barda and Laguna Fría around Paso del Sapo in northwestern Chubut Province
 (Argentina). Metatherians are well represented, mostly by dental remains
 of ‘Didelphimorphia’, Paucituberculata, Sparassodonta, Microbiotheria, and
 Polydolopimorphia. Here we analyse three calcanea and one astragalus
 referable to the same, indeterminate taxon, from La Barda, showing the
 fusion of their ectal and sustentacular facets. This facet arrangement
 characterizes the Australidelphia, a marsupial clade represented by
 Microbiotheria from South America and Antarctica, plus all Australasian
 lineages. Other australidelphian features shown by these tarsals include:
 in the calcanea, a reduced peroneal process and a tripartite cuboid facet;
 in the astragalus, a round, very small astragalar head in relation to the
 body; a convex trochlea with a half for the tibia and half, in slightly
 lower position, for the fibula. Their size and other anatomical features
 suggest that the new tarsals cannot be referred to the Microbiotheria.
 Phylogenetic analysis suggests that the La Barda taxon lies within the
 Australidelphia, and that it is either closely related or belongs to, the
 Diprotodontia. The existence of advanced australidelphians in Patagonia
 adds further evidence of the close relationship between Patagonia,
 Antarctica, and Australia during the Late Cretaceous – early Palaeogene.
description: Lorente, Chornogubsky,
 Goin - Australidelphian tarsals from PatagoniaData matrix modified
 from Beck (2012).Lorente, Chornogubsky, Goin -
 Palaeontology.nexSynapomorphiesList of synapomorphies for "New tarsal remains suggest the existence of non microbiotherian Australidelphian marsupials (Diprotodontia) in the Eocene of Patagonia"
DOI: 10.5061/dryad.qs941
title: Data from: Runaway coevolution: adaptation to heritable and nonheritable environments

description: Populations evolve in response to the external environment, whether
 abiotic (e.g., climate) or biotic (e.g., other conspecifics). We
 investigated how adaptation to biotic, heritable environments differs from
 adaptation to abiotic, non-heritable environments. We found that, for the
 same selection coefficients, the coadaptive process between genes and
 heritable environments is much faster than genetic adaptation to an
 abiotic non-heritable environment. The increased rate of adaptation
 results from of the positive association generated by reciprocal selection
 between the heritable environment and the genes responding to it. These
 associations result in a runaway process of adaptive coevolution, even
 when the genes creating the heritable environment and genes responding to
 the heritable environment are unlinked. Although tightening the degree of
 linkage accelerates the coadaptive process, the acceleration caused by a
 comparable amount of inbreeding is greater, because inbreeding has a
 cumulative effect on reducing functional recombination over generations.
 Our results suggest that that adaptation to local abiotic environmental
 variation may result in the rapid diversification of populations and
 subsequent reproductive isolation not directly but rather via its effects
 on heritable environments and the genes responding to them.
description: Runaway indirect genetic
 effects code and dataMATLAB code used to
 numerically iterate the full recursions in the main paper. Raw data for
 each figure in the main paper.Drown_Wade_IGE.zip
DOI: 10.5061/dryad.n0v5m
title: Data from: Ultraviolet and yellow reflectance but not fluorescence is important for visual discrimination of conspecifics by Heliconius erato

description: Toxic Heliconius butterflies have yellow hindwing bars that – unlike their
 closest relatives – reflect ultraviolet (UV) and long wavelength light,
 and also fluoresce. The pigment in the yellow scales is
 3-hydroxy-DL-kynurenine (3-OHK), found also in the hair and scales of a
 variety of animals. In other butterflies like pierids with color schemes
 characterized by independent sources of variation in UV and human-visible
 yellow/orange, behavioral experiments have generally implicated the UV
 component as most relevant to mate choice. This has not been addressed in
 Heliconius butterflies, where variation exists in analogous color
 components, but moreover where fluorescence due to 3-OHK could also
 contribute to yellow wing coloration. In addition, the potential cost due
 to predator visibility is largely unknown for the analogous well-studied
 pierid butterfly species. In field studies with butterfly paper models we
 show that both UV and 3-OHK yellow act as signals for H. erato but attack
 rates by birds do not differ significantly between the models.
 Furthermore, measurement of the quantum yield and reflectance spectra of
 3-OHK indicates that fluorescence does not contribute to the visual signal
 under broad-spectrum illumination. Our results suggest that the use of
 3-OHK pigmentation instead of ancestral yellow was driven by sexual
 selection rather than predation.
description: Mate Preference
 DataApproach and courtship
 events directed toward UV and Y artificial butterfly
 models.Field Predation
 DataRecorded bird attacks on
 UV and Y artificial butterfly models in the field.Predation Data
 DRYAD.xlsx
DOI: 10.5061/dryad.sb3c6
title: Data from: Three-dimensional innate mobility of the human foot bones under axial loading using biplane X-ray fluoroscopy

description: The anatomical design of the human foot is considered to facilitate
 generation of bipedal walking. However, how the morphology and structure
 of the human foot actually contribute to generation of bipedal walking
 remains unclear. In the present study, we investigated the
 three-dimensional kinematics of the foot bones under a weight-bearing
 condition using cadaver specimens, to characterize the innate mobility of
 the human foot inherently prescribed in its morphology and structure. Five
 cadaver feet were axially loaded up to 588 N (60 kgf), and radiographic
 images were captured using a biplane X-ray fluoroscopy system. The present
 study demonstrated that the talus is medioinferiorly translated and
 internally rotated as the calcaneus is everted owing to axial loading,
 causing internal rotation of the tibia and flattening of the medial
 longitudinal arch in the foot. Furthermore, as the talus is internally
 rotated, the talar head moves medially with respect to the navicular,
 inducing external rotation of the navicular and metatarsals. Under axial
 loading, the cuboid is everted simultaneously with the calcaneus owing to
 the osseous locking mechanism in the calcaneocuboid joint. Such detailed
 descriptions about the innate mobility of the human foot will contribute
 to clarifying functional adaptation and pathogenic mechanisms of the human
 foot.
description: Data set for figure
 5-8The changes of foot
 dimensions and foot bone movements of each specimen due to axial
 loading.Supplementary
 material_最終版.xlsx
DOI: 10.34740/kaggle/dsv/14633592
title: 🇰🇷 🇰🇵 Reddit r/Korea Subreddit Dataset 2026
DOI: 10.5061/dryad.0h4f8
title: Data from: Adaptive genetic variation mediates bottom-up and top-down control in an aquatic ecosystem

description: Research in eco-evolutionary dynamics and community genetics has
 demonstrated that variation within a species can have strong impacts on
 associated communities and ecosystem processes. Yet, these studies have
 centred around individual focal species and at single trophic levels,
 ignoring the role of phenotypic variation in multiple taxa within an
 ecosystem. Given the ubiquitous nature of local adaptation, and thus
 intraspecific variation, we sought to understand how combinations of
 intraspecific variation in multiple species within an ecosystem impacts
 its ecology. Using two species that co-occur and demonstrate adaptation to
 their natal environments, black cottonwood (Populus trichocarpa) and
 three-spined stickleback (Gasterosteus aculeatus), we investigated the
 effects of intraspecific phenotypic variation on both top-down and
 bottom-up forces using a large-scale aquatic mesocosm experiment. Black
 cottonwood genotypes exhibit genetic variation in their productivity and
 consequently their leaf litter subsidies to the aquatic system, which
 mediates the strength of top-down effects from stickleback on prey
 abundances. Abundances of four common invertebrate prey species and
 available phosphorous, the most critically limiting nutrient in freshwater
 systems, are dictated by the interaction between genetic variation in
 cottonwood productivity and stickleback morphology. These interactive
 effects fit with ecological theory on the relationship between
 productivity and top-down control and are comparable in strength to the
 effects of predator addition. Our results illustrate that intraspecific
 variation, which can evolve rapidly, is an under-appreciated driver of
 community structure and ecosystem function, demonstrating that a
 multi-trophic perspective is essential to understanding the role of
 evolution in structuring ecological patterns.
description: popstick_physical_wide_150622Physical response variables from the experiment (i.e. phosphorous, chla, GPP)PopStick_communityMatrices_150622Zooplankton, benthic invertebrate, and water column invertebrates from the Populus-stickleback experiment.
DOI: 10.5061/dryad.8s1qt
title: Data from: Genetics-based interactions of foundation species affect community diversity, stability, and network structure

description: We examined the hypothesis that genetics-based interactions between
 strongly interacting foundation species, the tree Populus angustifolia and
 the aphid Pemphigus betae, affect arthropod community diversity, stability
 and species interaction networks of which little is known. In a 2-year
 experimental manipulation of the tree and its aphid herbivore four major
 findings emerged: (i) the interactions of these two species determined the
 composition of an arthropod community of 139 species; (ii) both tree
 genotype and aphid presence significantly predicted community diversity;
 (iii) the presence of aphids on genetically susceptible trees increased
 the stability of arthropod communities across years; and (iv) the
 experimental removal of aphids affected community network structure
 (network degree, modularity and tree genotype contribution to modularity).
 These findings demonstrate that the interactions of foundation species are
 genetically based, which in turn significantly contributes to community
 diversity, stability and species interaction networks. These experiments
 provide an important step in understanding the evolution of Darwin's
 ‘entangled bank’, a metaphor that characterizes the complexity and
 interconnectedness of communities in the wild.
description: Keith IFS 2yr combined
 master of arthropod dataMaster file of raw
 arthropod data (2yrs)
DOI: 10.5061/dryad.504g0
title: Data from: Genetic substructure and admixture as important factors in linkage disequilibrium-based estimation of effective number of breeders in recovering wildlife populations

description: The number of effective breeders (Nb) and effective population size (Ne)
 are population parameters reflective of evolutionary potential,
 susceptibility to stochasticity, and viability. We have estimated these
 parameters using the linkage disequilibrium-based approach with LDNE
 through the latest phase of population recovery of the brown bears (Ursus
 arctos) in Finland (1993–2010; N = 621). This phase of the recovery was
 recently documented to be associated with major changes in genetic
 composition. In particular, differentiation between the northern and the
 southern genetic cluster declined rapidly within 1.5 generations. Based on
 this, we have studied effects of the changing genetic structure on Nb and
 Ne, by comparing estimates for whole Finland with the estimates for the
 two genetic clusters. We expected a potentially strong relationship
 between estimate sizes and genetic differentiation, which should disappear
 as the population recovers and clusters merge. Consistent with this, our
 estimates for whole Finland were lower than the sum of the estimates of
 the two genetic clusters and both approaches produced similar estimates in
 the end. Notably, we also found that admixed genotypes strongly increased
 the estimates. In all analyses, our estimates for Ne were larger than Nb
 and likely reflective for brown bears of the larger region of Finland and
 northwestern Russia. Conclusively, we find that neglecting genetic
 substructure may lead to a massive underestimation of Nb and Ne. Our
 results also suggest the need for further empirical analysis focusing on
 individuals with admixed genotypes and their potential high influence on
 Nb and Ne.
description: Datafile_DRYAD
DOI: 10.5061/dryad.pm130
title: Data from: Ontogenetic and stratigraphic influence on observed phenotypic integration in the limb skeleton of a fossil tetrapod

description: Understanding morphological integration is one of the central goals of
 evolutionary developmental biology. Despite its applicability to questions
 of paleontological interest, there are few studies on integration in
 fossil vertebrates. In this study, we examine limb integration in the
 Lower Jurassic ichthyosaur Stenopterygius quadriscissus, with the aim of
 examining the effect of ontogeny and anagenetic changes over short
 geological time spans on metrics of limb integration. Both ontogenetic and
 stratigraphic effects had a significant influence on measured values of
 integration, the identity of strongly integrated elements, and some common
 ratio values such as the relative integration of the forelimb to the hind
 limb, or within-limb to between-limb integration. Ontogenetic effects were
 relatively greater, although this could be linked to sample size. Although
 adults showed the lowest levels of overall integration, they possessed
 high levels of integration between serially homologous elements, something
 that was unexpected due to strong divergence in limb size and perhaps
 functional differences in derived ichthyosaurs. Ontogenetic differences in
 the relative integration of the forelimb to the hind limb are probably
 related to early locomotor demands on the forelimb. We conclude that if
 samples are pooled, the resulting pattern of integration may not reflect
 any one subsample but will be a composite created through the
 superposition of several variables. Pooling data in paleontological
 studies of integration has a non-trivial effect on the results obtained.
description: Maxwell&DececchiSISupplementary Table 1 (list of specimens examined) and Table 2 (results of the partial correlation analyses)
DOI: 10.5281/zenodo.18382861
title: Dataset for MS "Predominant Loss of Nutritionally Essential n-3 PUFA in Riverine Macroinvertebrates Following an Extreme Rainfall Event (a case study of the Anastasia River, Sakhalin Island)"
DOI: 10.5281/zenodo.18382860
title: Dataset for MS "Predominant Loss of Nutritionally Essential n-3 PUFA in Riverine Macroinvertebrates Following an Extreme Rainfall Event (a case study of the Anastasia River, Sakhalin Island)"
DOI: 10.5061/dryad.95mt02sb
title: Data from: Experimental evolution of Legionella pneumophila in mouse macrophages leads to strains with altered determinants of environmental survival

description: The Gram-negative bacterium, Legionella pneumophila, is a protozoan
 parasite and accidental intracellular pathogen of humans. We propose a
 model in which host cycling through multiple protozoan hosts in the
 environment holds L. pneumophila in a state of evolutionary stasis as a
 broad host-range pathogen. Using an experimental evolution approach, we
 tested this hypothesis by restricting L. pneumophila to growth within
 mouse macrophages for hundreds of generations. Whole-genome resequencing
 and high-throughput genotyping identified several parallel adaptive
 mutations and population dynamics that led to improved replication within
 macrophages. Based on these results, we provide a detailed view of the
 population dynamics of an experimentally evolving bacterial population,
 punctuated by frequent instances of transient clonal interference and
 selective sweeps. Non-synonymous point mutations in the flagellar
 regulator, fleN, resulted in increased uptake and broadly increased
 replication in both macrophages and amoebae. Mutations in multiple steps
 of the lysine biosynthesis pathway were also independently isolated,
 resulting in lysine auxotrophy and reduced replication in amoebae. These
 results demonstrate that under laboratory conditions, host restriction is
 sufficient to rapidly modify L. pneumophila fitness and host range. We
 hypothesize that, in the environment, host cycling prevents L. pneumophila
 host-specialization by maintaining pathways that are deleterious for
 growth in macrophages and other hosts.
description: Illumina reads from the
 "A" lineage of macrophage-adapted L.
 pneumophilaIllumina fastq files
 from genomic libraries prepared from L. pneumophila passaged through
 macrophages. "A" lineage clones. Quality scores are standard
 Sanger format.LineageA.tar.gzIllumina reads from the "B" lineage of macrophage-adapted L. pneumophilaIllumina fastq files from genomic libraries prepared from L. pneumophila passaged through macrophages. "B" lineage clones. Quality scores are standard Sanger format.LineageB.tar.gzIllumina reads from the "C" lineage of macrophage-adapted L. pneumophilaIllumina fastq files from genomic libraries prepared from L. pneumophila passaged through macrophages. "A" lineage clones. Quality scores are standard Sanger format.LineageC.tar.gzIllumina reads from the "D" lineage of macrophage-adapted L. pneumophilaIllumina fastq files from genomic libraries prepared from L. pneumophila passaged through macrophages. "D" lineage clones. Quality scores are standard Sanger format.LineageD.tar.gzIllumina reads from the progenitor strain used for generating macrophage-adapted L. pneumophilaIllumina fastq files from genomic libraries prepared from an LP01 strain of L. pneumophila, with the integrated pAhpC::lux plasmid. This is the progenitor, day 0, strain used during experimental adaptation of L. pneumophila to mouse macrophages. Quality scores are standard Sanger format.d0.sanger.fastq.gz