cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/06hys-ahz78
title: WT LP01 from Liu lab, Yale

description: Type four secretion system, T4SS
description: <strong>Tilt Series Date:</strong> 2016-11-28</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -5.0 μm,  magnification: 15500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Data collected by Bo Hu in Jun Liu lab at Yale from their Polara. Partial WT strain data set. Primary literature:  doi: 10.1038/s41564-018-0165-z</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-139/rawdata/</p>LP02May18B053_driftcorr.mrc,  Tilt Series (Pixel Size 0.25 nm), 2.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-139/rawdata/LP02May18B053_driftcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        LP02May18B053_driftcorr.rec,  Reconstruction (Pixel Size 1.0 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-139/3dimage_104916/LP02May18B053_driftcorr.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/jjcfh-18t77
title: pED208_pilated

description: E coli strain with plasmid pED208 overexpresses T4SS and F-like pili
description: <strong>Tilt Series Date:</strong> 2015-01-14</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Cells were obtained from Laura Frost</p>
<strong>Purification / Growth Conditions / Treatment:</strong> o/n liquid LB</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-14-57/rawdata/</p>pED208b0003.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-14-57/rawdata/pED208b0003.mrc"
        > <i class="download icon"></i> Download </a></p>

        pED208b0003_part121_10.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-14-57/3dimage_50688/pED208b0003_part121_10.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9p995-hxs41
title: nanowire+doublepili mutant+Chemo

description: This sample is batch 2 collection. This is from double pili mutant run on a chemostat.Batch 1 collection was from WT grown in serum bottle
description: <strong>Tilt Series Date:</strong> 2015-04-11</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -4.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh, USC</p>
<strong>Sample Preparation:</strong> Went to USC and froze using manual vitrobot. Only 1 grid was good among 6 and cells were isolated so couldn't detect any nanowires so far</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-04-11-2/rawdata/</p>1_atlas_nanowires0001.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-04-11-2/rawdata/1_atlas_nanowires0001.mrc"
        > <i class="download icon"></i> Download </a></p>

        1_atlas_nanowires0001_part121_7.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-04-11-2/3dimage_53839/1_atlas_nanowires0001_part121_7.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2zwhz-88932
title: NR1769/R1-16 conjugation

description: Grid box YWC228NR1769/R1-16 conjugating with NR1769 skinny E. coli
description: <strong>Tilt Series Date:</strong> 2016-11-01</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain and sample prepared by Carrie Shaffer</p>
  ycw2016-11-01-36_slicer17132.jpg: possible conjugation tubes between cells ycw2016-11-01-36_slicer17133.jpg: possible R1-16 conjugation between cells ycw2016-11-01-36_slicer17134.jpg: membrane rafts? ycw2016-11-01-36_slicer17135.jpg: possible R1-16 conjugtion between cells
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-11-01-36/3dimage_79474/</p>20161101_YWC228_10036_part81_7.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-11-01-36/3dimage_79474/20161101_YWC228_10036_part81_7.rec"
        > <i class="download icon"></i> Download </a></p>

        20161101_YWC228_10036.mrc,  Tilt Series (Pixel Size 0.48 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-11-01-36/rawdata/20161101_YWC228_10036.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.34740/kaggle/dsv/12879048
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.pfq4dh
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prays peregrina"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047343-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/fbxb3-fce92
title: WT LP01 from Liu lab, Yale

description: Type four secretion system, T4SS
description: <strong>Tilt Series Date:</strong> 2016-11-28</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -5.0 μm,  magnification: 15500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Data collected by Bo Hu in Jun Liu lab at Yale from their Polara. Partial WT strain data set. Primary literature:  doi: 10.1038/s41564-018-0165-z</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-210/rawdata/</p>T4SSWTDec12A055_driftcorr.mrc,  Tilt Series (Pixel Size 0.25 nm), 2.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-210/rawdata/T4SSWTDec12A055_driftcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        T4SSWTDec12A055_driftcorr.rec,  Reconstruction (Pixel Size 1.0 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-210/3dimage_104976/T4SSWTDec12A055_driftcorr.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8x3kw-dj374
title: PAOI delta aer2 pJN105-aer2

description: Pseudomonas aeruginosa strain PAOI delta aer2 pJN105-aer2
description: <strong>Tilt Series Date:</strong> 2015-02-12</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: 10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Kylie Watts (Loma Linda)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> induced pJN105-aer2, use 0.5% L-arabinoseStreak on LB plates and incubate overnight at 37°CInoculate 5 mL MOPS Minimal Media Limited Nitrogen (+ gentamicin for plasmid) from plate and grow at 30°C for ~24 hours</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-02-12-9/rawdata/</p>Pseudoaerplusinduced0012.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-02-12-9/rawdata/Pseudoaerplusinduced0012.mrc"
        > <i class="download icon"></i> Download </a></p>

        Pseudoaerplusinduced0012_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-02-12-9/3dimage_51837/Pseudoaerplusinduced0012_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9htaf-jbb52
title: P41+P41

description: Raw data files of P41+P41
description: <strong>Tilt Series Date:</strong> 2016-03-15</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Edward Sheppard from Duncan Krause's lab prepared the cell culture</p>
  scy2016-03-15-7_slicer16742.jpg: three attachment organelles, three different cells scy2016-03-15-7_slicer16743.jpg: attachment organelle, 2nd in cell scy2016-03-15-7_slicer16744.jpg: attachment organelle, it appears as if maybe there is another? (green arrow) but there isn't a clear view
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2016-03-15-7/rawdata/</p>atlas10006.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2016-03-15-7/rawdata/atlas10006.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas10006_full.rec,  Reconstruction (Pixel Size 1.56 nm), 356.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2016-03-15-7/3dimage_73590/atlas10006_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.13020/wyz1-t585
title: Exploring spatial variability in air quality-related health impacts of food production

description: Exposure to ambient air pollution is the leading environmental risk to human health globally, with food and agriculture contributing to a fifth of air quality related deaths. Most of these deaths are attributable to fine particulate matter PM2.5 pollution from synthetic fertilizers, animal manure, tillage and other on-farm activities, largely related to the production of animal-based foods. However, while it is known that reducing PM2.5 related emissions from agriculture is essential for improving the sustainability of food, less is known about its local impacts on air quality, what products are driving them, and how to design spatially optimized interventions. This thesis aims to fill the gaps in understanding of spatial variability of damages from food products, focusing on informing where these damages occur and exploring animal-based product- and country- level variability globally. I do this by 1) exploring the spatial distribution of health damages from US agriculture in food production by pollutant, agricultural activity, commodity, and food product; 2) identifying hotspot regions in the US by food consumption, production, and experienced damages; and 3) expanding analysis to the global health impacts of livestock production and related animal-based protein sources. I find that, in the US, rural populations experience a high burden of food-related PM2.5 pollution driven by animal-based foods, such as pork and beef. I also find that the Midwest US both causes and experiences the most PM2.5 related damages from US agriculture, and substantially more than it contributes through its consumption. Globally, I find high country-level variability in the health damages caused by animal-based protein production; for example, for beef, the largest country death per protein rate is 3,300% greater than the smallest. Overall, by identifying the hotspot areas for product- and county- level production in the US and animal-based product- and country- level production globally, my findings suggest specific localized interventions for improving agriculture related air quality. Taken together, my work shows that spatially targeted mitigation strategies can reduce both total health impacts and disparities in local impacts as compared to generalized interventions.
description: This dataset is supplemental material to the dissertation submitted by Madeline Faubion. Chapter 2 3 folder includes data for the development of figures and appendices related to Chapter 2 3 on the generation of a US air quality related health impacts from agriculture model. The Chapter 2 model needs to be run in order to develop the Figures for Chapter 3. Chapter 3 folder includes files and code for the development of the regional analysis for Chapter 3 and Chapter 4 includes data pertaining to the generation of data and figures for Chapter 4. The readme file includes external data sources that need to be downloaded to generate the data and analysis.
DOI: 10.22002/9mv64-jgh02
title: pED208_pilated

description: E coli strain with plasmid pED208 overexpresses T4SS and F-like pili
description: <strong>Tilt Series Date:</strong> 2015-01-14</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Cells were obtained from Laura Frost</p>
<strong>Purification / Growth Conditions / Treatment:</strong> o/n liquid LB</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-14-41/rawdata/</p>pED208a0041.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-14-41/rawdata/pED208a0041.mrc"
        > <i class="download icon"></i> Download </a></p>

        pED208a0041_part121_23.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-14-41/3dimage_50658/pED208a0041_part121_23.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/qdsjc-n7f96
title: Vibrio cholerae

description: Raw data files of Vibrio cholerae
description: <strong>Tilt Series Date:</strong> 2015-10-01</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> PM22, lacZ- Δvc1397 Δvc1402</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Simon Ringgaard</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Briegel, A., Ortega, D. R., Mann, P., Kjaer, A., Ringgaard, S. and Jensen, G. J. (2016). Chemotaxis cluster 1 proteins form cytoplasmic arrays in Vibrio cholerae and are stabilized by a double signaling domain receptor DosM. Proc Natl Acad Sci U S A 113, 10412-10417.</p>
description: Files available via S3 at s://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-10-01-19/3dimage_69768/</p>PM22deltaCheA1trippleW0020_part121_47.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-10-01-19/3dimage_69768/PM22deltaCheA1trippleW0020_part121_47.rec"
        > <i class="download icon"></i> Download </a></p>

        PM22deltaCheA1trippleW0020.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-10-01-19/rawdata/PM22deltaCheA1trippleW0020.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.18739/a2hm52m8p
title: Orthomosaic images and digital surface models at Drew Point, Beaufort Sea Coast, Alaska, 2018 and 2019

description: To assess coastal erosion dynamics during the 2018 and 2019 open water seasons at Drew Point, Beaufort Sea Coast, Alaska, we generated orthomosaic images and associated digital surface models from 9 unmanned aerial vehicle (UAV) surveys. UAV surveys were collected on 24 July 2018, 29 July 2018, 3 August 2018, 30 September 2018, 2 August 2019, 6 August 2019, 10 August 2019, 12 August 2019 and 15 August 2019. The digital surface models elevations are at relative sea level (2.2 meters (m) higher than local ellipsoid heights) and have been cleaned up (i.e. noise from waves removed) to only include the coast edge, ~125 m inland from the coast and toppled permafrost blocks in front of the bluff edge.
DOI: 10.22002/4t42v-r7q02
title: WT LP01 from Liu lab, Yale

description: Type four secretion system, T4SS
description: <strong>Tilt Series Date:</strong> 2016-11-28</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -5.0 μm,  magnification: 15500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Data collected by Bo Hu in Jun Liu lab at Yale from their Polara. Partial WT strain data set. Primary literature:  doi: 10.1038/s41564-018-0165-z</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-206/rawdata/</p>T4SSWTDec12A051_driftcorr.mrc,  Tilt Series (Pixel Size 0.25 nm), 2.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-206/rawdata/T4SSWTDec12A051_driftcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        T4SSWTDec12A051_driftcorr.rec,  Reconstruction (Pixel Size 1.0 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-206/3dimage_104971/T4SSWTDec12A051_driftcorr.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/k2xbh-x2120
title: nanochemowt

description: This is my fourth attempt to grow Shewanella. This culture is wt grown at caltech in chemostat.Frozen here in vitrobot.
description: <strong>Tilt Series Date:</strong> 2015-06-02</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -7.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh and Sahand USC</p>
<strong>Sample Preparation:</strong> This sample was frozen after being in oxygen deficiency for 16h. Checked by SEM and had nanowires. Vitrobot freezing conditions 6s blot force, 3s blot time, 1s drain time, 4ul on grid.</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-02-51/rawdata/</p>nanochemo_atlas10059.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-02-51/rawdata/nanochemo_atlas10059.mrc"
        > <i class="download icon"></i> Download </a></p>

        nanochemo_atlas10059_full.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-02-51/3dimage_57868/nanochemo_atlas10059_full.rec"
        > <i class="download icon"></i> Download </a></p>