cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17608/k6.auckland.17335052.v1
title: Hadden Little penguin diceCT raw to TIFs

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.6084/m9.figshare.12511358
title: Additional file 1 of Combination therapy of BCR-ABL-positive B cell acute lymphoblastic leukemia by tyrosine kinase inhibitor dasatinib and c-JUN N-terminal kinase inhibition

description: Additional file 1: Table S1. JNK kinase activity.
DOI: 10.17608/k6.auckland.17335058.v1
title: Hadden Little penguin skull Amira Arcus jugalis

description: Part of collection that contains images obtained during dissection of the heads of little penguins (Eudyptula minor) from Auckland, king penguins (Aptenodytes patagonicus) and gentoo penguins (Pygoscelis papua), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil.
DOI: 10.6084/m9.figshare.12511370.v1
title: Additional file 10 of Fulvic acid ameliorates drought stress-induced damage in tea plants by regulating the ascorbate metabolism and flavonoids biosynthesis

description: Additional file 10. The information of DEGs and DEMs involved in ascorbate metabolism.
DOI: 10.6084/m9.figshare.12511376.v1
title: Additional file 11 of Fulvic acid ameliorates drought stress-induced damage in tea plants by regulating the ascorbate metabolism and flavonoids biosynthesis

description: Additional file 11. The information of DEGs and DEMs involved in glutathione metabolism.
DOI: 10.6084/m9.figshare.14189624
title: Additional file 4 of Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data

description: Additional file 4: Table S3. Result comparison of NRY haplogroup classification tools on VCF data. This table gives a comparison of NRY haplogroup results of 1, 233 male samples from the 1000 Genomes Project data set phase 3 in VCF, performed by different NRY haplogroup classification tools that can use VCF data as input files, including Y-LineageTracker, HaploGrouper, and AMY-Tree.
DOI: 10.6084/m9.figshare.13662996.v1
title: Additional file 2 of Integrative transcriptomic, proteomic, and machine learning approach to identifying feature genes of atrial fibrillation using atrial samples from patients with valvular heart disease

description: Additional file 2. Results of the microarray meta-analysis.
DOI: 10.25386/genetics.12616691.v1
title: Supplemental Material for Baiocchi et al., 2020

description: Supplemental materials for Baiocchi et al. 2020, Signaling by AWC olfactory neurons is necessary for <i>C. elegans’ </i>response to<i> </i>prenol, an odor associated with nematode-infected insects.
DOI: 10.6084/m9.figshare.7898516
title: Mycotic aneurysm due to Salmonella species: clinical experiences and review of the literature

description: The mortality of patients with mycotic aneurysms is high, especially in East Asia, and infection by Salmonella species is the most common. Our study aimed to improve prognosis of adult mycotic aneurysms with early diagnosis and accurate treatment. Four adult patients with mycotic aneurysm caused by Salmonella were included and analyzed by single-center retrospective analysis. Cases reported in the literature during the past 10 years were also summarized. The average age of the 4 male patients was 61.25 years, while that of the 53 cases reported in the literature was 65.13 years. Hypertension, diabetes, and atherosclerosis were common complications. Most patients presented fever and experienced pain at the corresponding position of the aneurysm. Laboratory examination found an increased number of white blood cells accompanied by an increase in inflammatory markers. Most aneurysms were found in the abdominal aorta, while the rupture of an aneurysm was the most common complication. The mortality rates were 21.43 and 7.14% after open surgery or endovascular aneurysm repair (EVAR) intervention, respectively. The recurrence rates of infection were 0 and 17.85% for both treatments, respectively. The mortality rate of mycotic aneurysm caused by Salmonella infection was high in middle-aged males with hypertension, diabetes, and atherosclerosis. The possibility of a Salmonella-infected aneurysm should be considered in these high-risk groups presenting chills, fever, chest, and back pain. Open surgery was superior to EVAR treatment in the clearance of infected foci and the reduction of postoperative recurrence. The recurrence of postoperative infection can be prevented by intravenous antibiotic therapy for 6 weeks post-surgery.
DOI: 10.6084/m9.figshare.14189621.v1
title: Additional file 3 of Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data

description: Additional file 3: Table S2. Example output of NRY classification results generated by Y-LineageTracker. This table gives an example of the Y-LineageTracker output result of 1, 233 male samples from the 1000 Genomes Project data set phase 3.
DOI: 10.6084/m9.figshare.13141420.v1
title: Epigenome-wide association study identifies DNA methylation sites associated with target organ damage in older African Americans

description: Target organ damage (TOD) manifests as vascular injuries in the body organ systems associated with long-standing hypertension. DNA methylation in peripheral blood leukocytes can capture inflammatory processes and gene expression changes underlying TOD. We investigated the association between epigenome-wide DNA methylation and five measures of TOD (estimated glomerular filtration rate (eGFR), urinary albumin-creatinine ratio (UACR), left ventricular mass index (LVMI), relative wall thickness (RWT), and white matter hyperintensity (WMH)) in 961 African Americans from hypertensive sibships. A multivariate (multi-trait) model of eGFR, UACR, LVMI, and RWT identified seven CpGs associated with at least one of the traits (cg21134922, cg04816311 near <i>C7orf50</i>, cg09155024, cg10254690 near <i>OAT</i>, cg07660512, cg12661888 near <i>IFT43</i>, and cg02264946 near <i>CATSPERD</i>) at FDR q &lt; 0.1. Adjusting for blood pressure, body mass index, and type 2 diabetes attenuated the association for four CpGs. DNA methylation was associated with <i>cis</i>-gene expression for some CpGs, but no significant mediation by gene expression was detected. Mendelian randomization analyses suggested causality between three CpGs and eGFR (cg04816311, cg10254690, and cg07660512). We also assessed whether the identified CpGs were associated with TOD in 614 African Americans in the Hypertension Genetic Epidemiology Network (HyperGEN) study. Out of three CpGs available for replication, cg04816311 was significantly associated with eGFR (p = 0.0003), LVMI (p = 0.0003), and RWT (p = 0.002). This study found evidence of an association between DNA methylation and TOD in African Americans and highlights the utility of using a multivariate-based model that leverages information across related traits in epigenome-wide association studies.
DOI: 10.6084/m9.figshare.14189627.v1
title: Additional file 5 of Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data

description: Additional file 5: Table S4. Result comparison of NRY haplogroup classification tools on BAM data. This table gives a comparison of NRY haplogroup results of 100 male samples from the 1000 Genomes Project data set phase 3 in BAM format, performed by different NRY haplogroup classification tools that can use BAM data as input files, including Y-LineageTracker, Yleaf, and clean-tree.
DOI: 10.6084/m9.figshare.13663185.v1
title: Additional file 1 of Genome-wide identification of ubiquitin proteasome subunits as superior reference genes for transcript normalization during receptacle development in strawberry cultivars

description: Additional file 1: Figure S1. The structure of strawberry fruit in ‘Ruegen’. Figure S2. Identification, phylogenetic and domain analyses of the Actin gene family in strawberry and Arabidopsis. Figure S3. Identification, phylogenetic and domain analyses of the GAPDH gene family in strawberry and Arabidopsis. Figure S4. Identification, phylogenetic and domain analyses of the Tubulin gene family in strawberry and Arabidopsis. Figure S5. Identification, phylogenetic and domain analyses of the EF1α gene family in strawberry and Arabidopsis. Figure S6. Identification, phylogenetic and domain analyses of the QUL gene family in strawberry and Arabidopsis. Figure S7. Identification, phylogenetic and domain analyses of the SWIB gene family in strawberry and Arabidopsis. Figure S8. Identification, phylogenetic and domain analyses of the FHA gene family in strawberry and Arabidopsis. Figure S9. Identification, phylogenetic and domain analyses of the UBC gene family in strawberry and Arabidopsis. Figure S10. Identification, phylogenetic and domain analyses of the AP2/ERF gene family in strawberry and Arabidopsis. Figure S11. Identification, and phylogenetic and domain analyses of the bZip gene family in strawberry and Arabidopsis. Figure S12. Identification, phylogenetic and domain analyses of the PDC gene family in strawberry and Arabidopsis. Figure S13. Identification, phylogenetic and domain analyses of the HISTH4 gene family in strawberry and Arabidopsis. Figure S14. Identification of qualified HKGs in strawberry receptacle development based on RNA-seq data. Figure S15. Schematic illustration of the cellular functions of nine “SRDS” RGs. Figure S16. Relative expression of candidate reference genes from RNA-seq data. Figure S17. Strawberry receptacle RNA sample quality assessment. Figure S18. Specificity assessment of RT-qPCR primers. Figure S19. Flow chart showing procedure for RT-qPCR analysis of candidate reference genes during strawberry receptacle development. Figure S20. Expression stability of candidate reference genes of ‘Ruegen’ analyzed by RT-qPCR. Figure S21. Expression stability of candidate reference genes of ‘Monterey’ analyzed by RT-qPCR. Table S1. Description of 80 samples with receptacle development for RNA-seq in strawberry. Table S2. The information of HKG families in strawberry and Arabidopsis.
DOI: 10.6084/m9.figshare.14189624.v1
title: Additional file 4 of Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data

description: Additional file 4: Table S3. Result comparison of NRY haplogroup classification tools on VCF data. This table gives a comparison of NRY haplogroup results of 1, 233 male samples from the 1000 Genomes Project data set phase 3 in VCF, performed by different NRY haplogroup classification tools that can use VCF data as input files, including Y-LineageTracker, HaploGrouper, and AMY-Tree.
DOI: 10.6084/m9.figshare.14189645
title: Additional file 5 of Genetic disruption of serine biosynthesis is a key driver of macular telangiectasia type 2 aetiology and progression

description: Additional file 5: Table S4. List of all Shin et al mPRS associations results.
DOI: 10.17608/k6.auckland.17334959.v1
title: Hadden Gentoo and Little penguin skull stl files

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.17608/k6.auckland.17334962
title: Hadden Gentoo penguin skull CTAn x4 voi

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.6084/m9.figshare.13663185
title: Additional file 1 of Genome-wide identification of ubiquitin proteasome subunits as superior reference genes for transcript normalization during receptacle development in strawberry cultivars

description: Additional file 1: Figure S1. The structure of strawberry fruit in ‘Ruegen’. Figure S2. Identification, phylogenetic and domain analyses of the Actin gene family in strawberry and Arabidopsis. Figure S3. Identification, phylogenetic and domain analyses of the GAPDH gene family in strawberry and Arabidopsis. Figure S4. Identification, phylogenetic and domain analyses of the Tubulin gene family in strawberry and Arabidopsis. Figure S5. Identification, phylogenetic and domain analyses of the EF1α gene family in strawberry and Arabidopsis. Figure S6. Identification, phylogenetic and domain analyses of the QUL gene family in strawberry and Arabidopsis. Figure S7. Identification, phylogenetic and domain analyses of the SWIB gene family in strawberry and Arabidopsis. Figure S8. Identification, phylogenetic and domain analyses of the FHA gene family in strawberry and Arabidopsis. Figure S9. Identification, phylogenetic and domain analyses of the UBC gene family in strawberry and Arabidopsis. Figure S10. Identification, phylogenetic and domain analyses of the AP2/ERF gene family in strawberry and Arabidopsis. Figure S11. Identification, and phylogenetic and domain analyses of the bZip gene family in strawberry and Arabidopsis. Figure S12. Identification, phylogenetic and domain analyses of the PDC gene family in strawberry and Arabidopsis. Figure S13. Identification, phylogenetic and domain analyses of the HISTH4 gene family in strawberry and Arabidopsis. Figure S14. Identification of qualified HKGs in strawberry receptacle development based on RNA-seq data. Figure S15. Schematic illustration of the cellular functions of nine “SRDS” RGs. Figure S16. Relative expression of candidate reference genes from RNA-seq data. Figure S17. Strawberry receptacle RNA sample quality assessment. Figure S18. Specificity assessment of RT-qPCR primers. Figure S19. Flow chart showing procedure for RT-qPCR analysis of candidate reference genes during strawberry receptacle development. Figure S20. Expression stability of candidate reference genes of ‘Ruegen’ analyzed by RT-qPCR. Figure S21. Expression stability of candidate reference genes of ‘Monterey’ analyzed by RT-qPCR. Table S1. Description of 80 samples with receptacle development for RNA-seq in strawberry. Table S2. The information of HKG families in strawberry and Arabidopsis.
DOI: 10.17608/k6.auckland.17334959.v2
title: Hadden Gentoo and Little penguin skull stl files

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.6084/m9.figshare.14189651.v1
title: Additional file 7 of Genetic disruption of serine biosynthesis is a key driver of macular telangiectasia type 2 aetiology and progression

description: Additional file 7: Table S6. Endophenotypes compositions and weights (available as .xlsx file). Phenotypes are presented in rows while Endophenotypes are presented as columns. The weight that each phenotype has on the endophenotype creation is presented in each cell value.
DOI: 10.6084/m9.figshare.6849656.v1
title: Risk factors for abnormally invasive placenta: a systematic review and meta-analysis

description: <b>Purpose of the article.</b> To explore the strength of association between different maternal and pregnancy characteristics and the occurrence of abnormally invasive placenta (AIP). <b>Materials and methods:</b> Pubmed, Embase, CINAHL databases were searched. The risk factors for AIP explored were: obesity, age &gt;35 years, smoking before or during pregnancy, placenta previa, prior cesarean section (CS), placenta previa and prior CS, prior uterine surgery, abortion and uterine curettage, <i>in vitro</i> fertilization (IVF) pregnancy and interval between a previous CS, and a subsequent pregnancy. Random-effect head-to-head meta-analyses were used to analyze the data. <b>Results:</b> Forty-six were included in the systematic review. Maternal obesity (Odd ratio, OR: 1.4, 95% CI 1.0–1.8), advanced maternal age (OR: 3.1, 95% CI 1.4–7.0) and parity (OR: 2.5, 95% CI 1.7–3.6), but not smoking were associated with a higher risk of AIP. The presence of placenta previa in women with at least a prior CS was associated with a higher risk of AIP compared to controls, with an OR of 12.0, 95% CI 1.6–88.0. Furthermore, the risk of AIP increased with the number of prior CS (OR of 2.6, 95% CI 1.6–4.4 and 5.4, 95% CI 1.7–17.4 for two and three prior CS respectively). Finally, IVF pregnancies were associated with a high risk of AIP, with an OR of 2.8 (95% CI 1.2–6.8). <b>Conclusion:</b> A prior CS and placenta previa are among the strongest risk factors for the occurrence of AIP.
DOI: 10.6084/m9.figshare.22578288
title: ROOM-TEMPERATURE PPB-LEVEL ANILINE VAPOR SENSOR FUNCTIONALIZED WITH UIO-66-SO3H

description: Aniline vapor must be immediately detected at low concentrations since it is a hazardous gaseous chemical. Here, ppb level aniline vapor is detected using the metal-organic framework of UIO-66-SO3H. Utilizing a quartz crystal microbalance (QCM) sensing platform, the aniline adsorption-induced mass change of UIO-66-SO3H is converted to a signal of frequency shift. The sensor can detect a concentration of 20 ppb of aniline vapor and has good sensitivity for this purpose. Additionally, the sensor’s repeatability and stability are satisfactory. Notably, the sensor’s selectivity is prominent. Its response to aniline is much higher than that of ten interfering gases and BTEX vapor. And even in conditions with varying levels of humidity, this sensor maintains response stability.
DOI: 10.6084/m9.figshare.22578301
title: SYNTHESIS, CRYSTAL STRUCTURES AND MAGNETIC PROPERTIES OF COORDINATION COMPOUNDS WITH NITRONYL NITROXIDE RADICALS AND [M(HFAC)2] (M = CUII AND MNII)

description: The reaction of metal hexafluoroacetylacetonato [MII(hfac)2, M = Cu, Mn] with the stable nitronyl nitroxide 2-(3-isobutyl-pyrazole)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (L), resulted in one dimensional zig-zag chain systems [{Cu(hfac)2}2L2]n and [CuMn(hfac)4L2]n. The main feature inherent in the nature of [{Cu(hfac)2}2L2]n single crystals is their ability to undergo reversible structural rearrangements with temperature variation, accompanied by anomalies of magnetism. The value of χmT shown strongly antiferromagnetic at low temperature and becomes ferromagnetic when the temperature increases. And the heteronuclear complex [CuMn(hfac)4L2]n shows antiferromagnetic interactions between manganese and nitronyl nitroxide.
DOI: 10.6084/m9.figshare.14189630
title: Additional file 6 of Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data

description: Additional file 6: Table S5. Result comparison of Y-STR genotyping tools. This table gives a comparison of Y-STR genotypes of 100 male samples from the 1000 Genomes Project data set phase 3 in BAM format, performed by Y-LineageTracker and lobSTR.
DOI: 10.6084/m9.figshare.14189631.v1
title: Additional file 10 of Identification of 11 candidate structured noncoding RNA motifs in humans by comparative genomics

description: Additional file 10. Motif_33,250 Stockholm file.
DOI: 10.6084/m9.figshare.14189661
title: Additional file 19 of Identification of 11 candidate structured noncoding RNA motifs in humans by comparative genomics

description: Additional file 19:. txt file for all 11,763 motifs part1.
DOI: 10.6084/m9.figshare.14189673.v1
title: Additional file 22 of Identification of 11 candidate structured noncoding RNA motifs in humans by comparative genomics

description: Additional file 22:. txt file for all 11,763 motifs part4.
DOI: 10.17608/k6.auckland.17334977.v1
title: Hadden Gentoo skull processing BIN(1)

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.6084/m9.figshare.6849743
title: Table S5 MicroRNA target site analysis for differential expressed circRNAs from Identification and characterization of circular RNAs in Qinchuan cattle testis

description: Circular RNA (circRNA) is a new class of non-coding RNA that has recently attracted researchers' interest. Studies have demonstrated that circRNA can function as microRNA sponges or competing endogenous RNAs. Although circRNA has been explored in some species and tissues, the genetic basis of testis development and spermatogenesis in cattle remains unknown. We performed ribo-depleted total RNA-Seq to detect circRNA expression profiles of neonatal (one week old) and adult (4 years old) Qinchuan cattle testes. We obtained 91 112 596 and 80 485 868 clean reads and detected 21 753 circRNAs. A total of 4248 circRNAs were significantly differentially expressed between neonatal and adult cattle testes. Among these circRNAs, 2225 were upregulated, and 2023 were downregulated in adult cattle testis. Genomic feature, length distribution and other characteristics of the circRNAs in cattle testis were studied. Moreover, Gene Ontology and KEGG pathway analyses were performed for source genes of circRNAs. These source genes were mainly involved in tight junction, adherens junction, TGFβ signalling pathway and reproduction, such as <i>PIWIL1, DPY19L2, SLC26A8, IFT81, SMC1B, IQCG</i> and <i>TTLL5</i>. CircRNA expression patterns were validated by RT-qPCR. Our discoveries provide a solid foundation for the identification and characterization of key circRNAs involved in testis development or spermatogenesis.
DOI: 10.17608/k6.auckland.17334986.v1
title: Hadden Gentoo skull processing processed BIN

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.