cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15363897
title: PDB structures of 8,660 type II L-asparaginases from bacteria and archaea

description: This dataset contains predicted protein structures of 8,660 type II L-asparaginase (AII) sequences from bacteria and archaea. Structures were generated using AlphaFold2 v2.2.3 with the multimer setting enabled to model homotetrameric assemblies, reflecting the typical quaternary structure of functional L-asparaginases.

These structural models were used to investigate the diversity and potential therapeutic relevance of type II L-asparaginases, including identification of enzymes with no detectable L-glutaminase activity.

The dataset supports the findings of the publication:Janicki M. et al. A new bacterial L-asparaginase with no L-glutaminase activity: a promising candidate for leukemia therapy.
DOI: 10.5281/zenodo.15363898
title: PDB structures of 8,660 type II L-asparaginases from bacteria and archaea

description: This dataset contains predicted protein structures of 8,660 type II L-asparaginase (AII) sequences from bacteria and archaea. Structures were generated using AlphaFold2 v2.2.3 with the multimer setting enabled to model homotetrameric assemblies, reflecting the typical quaternary structure of functional L-asparaginases.

These structural models were used to investigate the diversity and potential therapeutic relevance of type II L-asparaginases, including identification of enzymes with no detectable L-glutaminase activity.

The dataset supports the findings of the publication:Janicki M. et al. A new bacterial L-asparaginase with no L-glutaminase activity: a promising candidate for leukemia therapy.
DOI: 10.15468/dl.hbpgkj
title: Occurrence Download

description: A dataset containing 171069 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thunnus albacares (Bonnaterre, 1788)"
 ]
}

 The dataset includes 171069 records from 166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021292-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/exh4-5f84
title: CHUSKASp 5 pollen surface sample dataset

description: Raw data for the CHUSKASp 5 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/2nhb-5619
title: LDDsite2710 ostracode surface sample dataset

description: Raw data for the LDDsite2710 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.jn9xkb
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gestroiella Montandon, 1897"
 ]
}

 The dataset includes 62 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021306-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28956014
title: Supplementary Material for: The complex interplay between sleep and neurodegenerative diseases: An epidemiological view

description: Background: Sleep disorders and neurodegeneration (NDG) are mutually related but the nature of this relationship is unclear. We aimed to better understand the relationship between sleep and neurodegenerative disease by performing a critical review of epidemiological studies that investigated the association of sleep disorders and the subsequent development of Alzheimer’s disease (AD), Parkinson’s disease (PD), or general dementia.
Methods: We searched for all case-control or prospective cohort studies published in PubMed until August 8 2024 evaluating a series of sleep features and subsequent development of AD, PD, or general dementia over certain observation periods. Patient data, sleep features, and outcome data related to PD, AD, and general dementia were extracted following the PRISMA guidelines. Relative risks for the different NDG diseases were extracted. Study quality was assessed with the Newcastle-Ottawa quality assessment scale.
Results: Of 1,139 identified articles 52 were selected from 30 independent studies (29 cohort and one case-control study), including &gt;2.9 million individuals with follow-up periods ranging from three to 40 years. The included articles reported on 18,765 AD outcomes, 14,312 PD outcomes, and 100,453 dementia outcomes. Forty-five articles were classified as having a high-quality. Despite that, there was a great variability in the main aim of the studies, the sleep features evaluated, the diagnostic system employed or the duration of the follow-ups. Only twelve studies assessed sleep with objective measures. The influence of sleep duration and sleep quality, chronotype, and the presence of excessive daytime sleepiness, insomnia, obstructive sleep apnea, snoring, restless legs syndrome showed varying risk ratios or no statistically significant association with PD, AD and dementia over time. 
Conclusion: Our systematic review underlines the need for further comprehensive epidemiological studies with homogenous and objective sleep measures to evaluate the different sleep features and understand the relationship between sleep and NDG disease.
DOI: 10.6084/m9.figshare.28956014.v1
title: Supplementary Material for: The complex interplay between sleep and neurodegenerative diseases: An epidemiological view

description: Background: Sleep disorders and neurodegeneration (NDG) are mutually related but the nature of this relationship is unclear. We aimed to better understand the relationship between sleep and neurodegenerative disease by performing a critical review of epidemiological studies that investigated the association of sleep disorders and the subsequent development of Alzheimer’s disease (AD), Parkinson’s disease (PD), or general dementia.
Methods: We searched for all case-control or prospective cohort studies published in PubMed until August 8 2024 evaluating a series of sleep features and subsequent development of AD, PD, or general dementia over certain observation periods. Patient data, sleep features, and outcome data related to PD, AD, and general dementia were extracted following the PRISMA guidelines. Relative risks for the different NDG diseases were extracted. Study quality was assessed with the Newcastle-Ottawa quality assessment scale.
Results: Of 1,139 identified articles 52 were selected from 30 independent studies (29 cohort and one case-control study), including &gt;2.9 million individuals with follow-up periods ranging from three to 40 years. The included articles reported on 18,765 AD outcomes, 14,312 PD outcomes, and 100,453 dementia outcomes. Forty-five articles were classified as having a high-quality. Despite that, there was a great variability in the main aim of the studies, the sleep features evaluated, the diagnostic system employed or the duration of the follow-ups. Only twelve studies assessed sleep with objective measures. The influence of sleep duration and sleep quality, chronotype, and the presence of excessive daytime sleepiness, insomnia, obstructive sleep apnea, snoring, restless legs syndrome showed varying risk ratios or no statistically significant association with PD, AD and dementia over time. 
Conclusion: Our systematic review underlines the need for further comprehensive epidemiological studies with homogenous and objective sleep measures to evaluate the different sleep features and understand the relationship between sleep and NDG disease.
DOI: 10.5281/zenodo.15349084
title: 1 year time serie (fastq)_part1/2

description: Supplementary data to the paper "Time series data provide insights into the evolution and abundance of one of the most abundant viruses in the marine virosphere: the uncultured pelagiphages vSAG 37-F6"

Includes half of the fastq reads for the 1 year time serie.

 

The other half of the fastq reads can be found at: 10.5281/zenodo.15364024

The 1-year time serie (fasta) can be found at: 10.5281/zenodo.15221766

The 7-years time serie can be found at: 10.5281/zenodo.10886231
DOI: 10.5281/zenodo.15349085
title: 1 year time serie (fastq)_part1/2

description: Supplementary data to the paper "Time series data provide insights into the evolution and abundance of one of the most abundant viruses in the marine virosphere: the uncultured pelagiphages vSAG 37-F6"

Includes half of the fastq reads for the 1 year time serie.

 

The other half of the fastq reads can be found at: 10.5281/zenodo.15364024

The 1-year time serie (fasta) can be found at: 10.5281/zenodo.15221766

The 7-years time serie can be found at: 10.5281/zenodo.10886231
DOI: 10.21233/w0sm-2t46
title: Urengoi-town testate amoebae surface sample dataset

description: Raw data for the Urengoi-town testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/vjvp-nv98
title: Sewell Lake ostracode surface sample dataset

description: Raw data for the Sewell Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.wcffmu
title: Occurrence Download

description: A dataset containing 16475 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carcharodon carcharias (Linnaeus, 1758)"
 ]
}

 The dataset includes 16475 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021307-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/etk4-tc82
title: Makauwahi Cave insect dataset

description: Raw data for the Makauwahi Cave insect dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.h3sz7m
title: Occurrence Download

description: A dataset containing 4816 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amara apricaria (Paykull, 1790)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 4816 records from 197 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021309-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/hdjk-s310
title: Radisson 1 insect dataset

description: Raw data for the Radisson 1 insect dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.2dzgmp
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coptocatus Montandon, 1909"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021310-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n7wh-r044
title: LDDsite6293 water chemistry dataset

description: Raw data for the LDDsite6293 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/83h2-vc95
title: LDDsite1459 water chemistry dataset

description: Raw data for the LDDsite1459 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15221766
title: 1 year time serie

description: Supplementary data to the paper "Time series data provide insights into the evolution and abundance of one of the most abundant viruses in the marine virosphere: the uncultured pelagiphages vSAG 37-F6"

Includes the fasta reads for the 1 year time serie

 

The 7-years time serie can be found at: 10.5281/zenodo.10886231

 

The fastq reads of the 1-year time serie can be found at 10.5281/zenodo.15349085 and 10.5281/zenodo.15364024
DOI: 10.5281/zenodo.15221767
title: 1 year time serie

description: Supplementary data to the paper "Time series data provide insights into the evolution and abundance of one of the most abundant viruses in the marine virosphere: the uncultured pelagiphages vSAG 37-F6"

Includes the fasta reads for the 1 year time serie

 

The 7-years time serie can be found at: 10.5281/zenodo.10886231

 

The fastq reads of the 1-year time serie can be found at 10.5281/zenodo.15349085 and 10.5281/zenodo.15364024
DOI: 10.15468/dl.m2gjzf
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heleolaccocoris Sites, 2022"
 ]
}

 The dataset includes 24 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021311-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/fvw3-6b22
title: Alfred Bog testate amoebae surface sample dataset

description: Raw data for the Alfred Bog testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.b9xh3q
title: Occurrence Download

description: A dataset containing 2548575 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Oxyura jamaicensis (J.F.Gmelin, 1789)",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 2548575 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021291-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/94tt-9v13
title: LDDsite1702 water chemistry dataset

description: Raw data for the LDDsite1702 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.a7p9ec
title: Occurrence Download

description: A dataset containing 388 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heleocoris Stål, 1876"
 ]
}

 The dataset includes 388 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021312-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/g7x4-c998
title: Horsemarsh Sewer pollen dataset

description: Raw data for the Horsemarsh Sewer pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.st7ear
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Decarloa La Rivers, 1969"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021313-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/2tpm-5m57
title: "Learning Modality-Aware Representations: Adaptive Group-wise Interaction Network for Multimodal MRI Synthesis"

description: "Multimodal MR image synthesis aims to generate missing modality images by effectively fusing and mapping from a subset of available MRI modalities. Most existing methods adopt an image-to-image translation paradigm, treating multiple modalities as input channels. However, these approaches often yield sub-optimal results due to the inherent difficulty in achieving precise feature- or semantic-level alignment across modalities. To address these challenges, we propose an Adaptive Group-wise Interaction Network (AGI-Net) that explicitly models both inter-modality and intra-modality relationships for multimodal MR image synthesis. Specifically, feature channels are first partitioned into predefined groups, after which an adaptive rolling mechanism is applied to conventional convolutional kernels to better capture feature and semantic correspondences between different modalities. In parallel, a cross-group attention module is introduced to enable effective feature fusion across groups, thereby enhancing the network\u2019s representational capacity. We validate the proposed AGI-Net on the publicly available IXI and BraTS2023 datasets. Experimental results demonstrate that AGI-Net achieves state-of-the-art performance in multimodal MR image synthesis tasks, confirming the effectiveness of its modality-aware interaction design. We release the relevant code at: https:\/\/github.com\/zunzhumu\/Adaptive-Group-wise-Interaction-Network-for-Multimodal-MRI-Synthesis.git."
DOI: 10.21233/8bt9-6w10
title: Zijderveld pollen dataset

description: Raw data for the Zijderveld pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.macrrp
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((0.15419 40.09828,0.24282 40.19655,0.27169 40.20747,0.27306 40.23784,0.21393 40.23784,0.17177 40.22333,0.11861 40.14928,0.10939 40.11481,0.11982 40.1082,0.15419 40.09828))",
 "HasGeospatialIssue is false",
 "TaxonKey is Arundo donax L.",
 "Year 2007-2025"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021314-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/2pqx-4530
title: Ice Lake water chemistry dataset

description: Raw data for the Ice Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/y7sk-hs15
title: HU2008-029-070 dinoflagellates dataset

description: Raw data for the HU2008-029-070 dinoflagellates dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/98xz-ex68
title: Etang d'y Cor Montana pollen dataset

description: Raw data for the Etang d'y Cor Montana pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.g2hp5n
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diaphorocoris Montandon, 1897"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021315-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/x047-f145
title: 24CA287 vertebrate fauna dataset

description: Raw data for the 24CA287 vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.uc6w3c
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trochoceramus Heinz, 1932"
 ]
}

 The dataset includes 58 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021316-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpdxzu
title: Occurrence Download

description: A dataset containing 8687 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Akashiwo sanguinea (K.Hirasaka) Gert Hansen & Moestrup"
 ]
}

 The dataset includes 8687 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021317-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.