cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rqz922
title: Occurrence Download

description: A dataset containing 488154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-76.25207 8.72087,-76.46004 7.34372,-75.06921 7.18899,-74.56227 8.38668,-76.25207 8.72087))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 1995-2025"
 ]
}

 The dataset includes 488154 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010599-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8a9ss
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)",
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pterocarpus tinctorius"
 ]
}

 The dataset includes 30 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010659-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.379xee
title: Occurrence Download

description: A dataset containing 4845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-178.69724 -20.14823,-5.30276 -20.14823,-5.30276 49.14823,-178.69724 49.14823,-178.69724 -20.14823))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phoebis agarithe agarithe",
 "Year 1965-2015"
 ]
}

 The dataset includes 4845 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010660-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmy6ws
title: Occurrence Download

description: A dataset containing 29449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is South America",
 "TaxonKey is Dendrobatidae"
 ]
}

 The dataset includes 29449 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010658-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13886418
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.9x2hbc
title: Occurrence Download

description: A dataset containing 66611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Namibia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chromista"
 ]
}

 The dataset includes 66611 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010628-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cy9tf5
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abronia matudai"
 ]
}

 The dataset includes 45 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010662-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.96hjs3
title: Occurrence Download

description: A dataset containing 25641 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Ghana",
 "TaxonKey is Bucerotidae"
 ]
}

 The dataset includes 25641 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010661-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84t2r2
title: Occurrence Download

description: A dataset containing 9276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhea pennata",
 "Country is Chile",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation)"
 ]
}

 The dataset includes 9276 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010664-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynmq6r
title: Occurrence Download

description: A dataset containing 1066 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Month is July",
 "OccurrenceStatus is Present",
 "TaxonKey is Aglais io",
 "Year is 2012"
 ]
}

 The dataset includes 1066 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010665-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tve99j
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abronia mitchelli"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010666-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kctet2
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)",
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhodognaphalon mossambicense"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010667-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5t2c5
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus coeruleus"
 ]
}

 The dataset includes 191 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010668-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n6h4yu
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus hatcheri"
 ]
}

 The dataset includes 119 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010669-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zt9ww3
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus kolengh"
 ]
}

 The dataset includes 15 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010670-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kub62h
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abronia ochoterenai"
 ]
}

 The dataset includes 30 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010671-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20383/103.01508
title: 3D ultrasound localization microscopy of the nonhuman primate brain

description: 3D ultrasound localization microscopy dataset of the nonhuman primate brain. Academic reference to be cited : Xing P, Perrot V, Dominguez-Vargas AU, Porée J, Quessy S, Dancause N, Provost J. 3D ultrasound localization microscopy of the nonhuman primate brain. EBioMedicine. 2025 Jan 1;111. DOI: 10.1016/j.ebiom.2024.105457
DOI: 10.15468/dl.kmr8wq
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus lineomaculatus"
 ]
}

 The dataset includes 241 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010673-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3s2yrn
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus magellanicus"
 ]
}

 The dataset includes 164 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010674-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20387/bonares-9d7x-5k08
title: Positive intercropping effects on biomass production are species-specific and involve rhizosphere enzyme activities: Evidence from a ﬁeld study

description: This dataset contains plant biomass as well as enzyme kinetic parameters from a field experiment comprising of monocultures and intercroppoing.

The study belonging to this dataset is published as: https://doi.org/10.1007/s42832-021-0108-0 in Soil Ecology Letters in 2021.

Research domain: Plant Cultivation and Agricultural Technology

Dataset version 1.0
DOI: 10.5281/zenodo.6327572
title: CATHe Dataset and Weights

description: This dataset consists of the training, optimization, and testing sets used for developing the CATHe model, which is a deep learning framework capable of detecting extremely remote homologues (&lt; 20% sequence identity) for CATH superfamilies. Additionally, the training weights for the artificial neural network present in the CATHe model have been provided.
DOI: 10.5281/zenodo.6327571
title: CATHe Dataset and Weights

description: This dataset consists of the training, optimization, and testing sets used for developing the CATHe model, which is a deep learning framework capable of detecting extremely remote homologues (&lt; 20% sequence identity) for CATH superfamilies. Additionally, the training weights for the artificial neural network present in the CATHe model have been provided.
DOI: 10.6084/m9.figshare.17129771
title: Supplementary information (revision 1): Structural-bioinformatics analysis of SARS-CoV-2 variants reveals higher hACE2 receptor binding affinity for Omicron B.1.1.529 spike RBD compared to wild-type reference.

description: Supplementary information: Structural-bioinformatics analysis of SARS-CoV-2 variants reveals higher hACE2 receptor binding affinity for Omicron B.1.1.529 spike RBD compared to wild-type reference.
DOI: 10.6084/m9.figshare.17129771.v1
title: Supplementary information: Structural-bioinformatics analysis of SARS-CoV-2 variants reveals higher hACE2 receptor binding affinity for Omicron B.1.1.529 spike RBD compared to wild-type reference.

description: Supplementary information: Structural-bioinformatics analysis of SARS-CoV-2 variants reveals higher hACE2 receptor binding affinity for Omicron B.1.1.529 spike RBD compared to wild-type reference.
DOI: 10.6084/m9.figshare.19383437
title: Hsa_circ_0000081 promotes the function of gastric cancer through sponging hsa-miR-423-5p to influence 3-phosphoinositide-dependent kinase 1 expression

description: Gastric cancer (GC) is one of the most common malignancies in the world, and effective therapeutic targets need to be identified for this type of cancer. In this study, circular RNA (circRNA) microarray analysis was utilized to screen differentially expressed circRNA in GC. Using quantitative reverse transcription polymerase chain reaction (qRT-PCR), hsa_circ_0000081 (circRNA-0000081) expression was found to be up-regulated in tissues and cells and was negative correlated with patients’ survival time. RNase R and Actinomycin D assays indicated that circRNA-0000081 was significantly more resistant to R enzyme and had a longer half-life than linear RNA. Moreover, the knockdown or overexpression of circRNA-000081 could influence the proliferation, migration, and invasion potential of GC. Finally, dual luciferase reporter, RNA immunoprecipitation, qRT-PCR, and western blotting assays were used to verify the targeting relationship between circRNA-000081 and miRNA-423-5p or miRNA-423-5p and 3-phosphoinositide-dependent kinase 1 (PDPK1). In conclusion, circRNA-0000081 promotes the function of GC through sponging hsa-miR-423-5p to influence PDPK1 expression, which has a promising therapeutic potential for treating patients with GC.
DOI: 10.6084/m9.figshare.19383437.v1
title: Hsa_circ_0000081 promotes the function of gastric cancer through sponging hsa-miR-423-5p to influence 3-phosphoinositide-dependent kinase 1 expression

description: Gastric cancer (GC) is one of the most common malignancies in the world, and effective therapeutic targets need to be identified for this type of cancer. In this study, circular RNA (circRNA) microarray analysis was utilized to screen differentially expressed circRNA in GC. Using quantitative reverse transcription polymerase chain reaction (qRT-PCR), hsa_circ_0000081 (circRNA-0000081) expression was found to be up-regulated in tissues and cells and was negative correlated with patients’ survival time. RNase R and Actinomycin D assays indicated that circRNA-0000081 was significantly more resistant to R enzyme and had a longer half-life than linear RNA. Moreover, the knockdown or overexpression of circRNA-000081 could influence the proliferation, migration, and invasion potential of GC. Finally, dual luciferase reporter, RNA immunoprecipitation, qRT-PCR, and western blotting assays were used to verify the targeting relationship between circRNA-000081 and miRNA-423-5p or miRNA-423-5p and 3-phosphoinositide-dependent kinase 1 (PDPK1). In conclusion, circRNA-0000081 promotes the function of GC through sponging hsa-miR-423-5p to influence PDPK1 expression, which has a promising therapeutic potential for treating patients with GC.
DOI: 10.17632/d82fysk7n6.1
title: R Status is a Relevant Prognostic Factor for Recurrence and Survival After Pancreatic Head Resection for Ductal Adenocarcinoma

description: Data refer to the paper doi: 10.1245/s10434-020-09467-6
Data were collected in a prospective database maintained at the Division of Pancreatic Surgery, San Raffaele Scientific Institute, Milan, Italy. Patients with a histologic diagnosis of PDAC in the head of the pancreas who underwent pancreatoduodenectomy or total pancreatectomy were eligible for the study. Only patients with a minimum follow-up period of 12 months were included unless they had died within 1 year after surgery because of tumor recurrence
DOI: 10.26106/e3zk-w013
title: 0-1 matrix of Pulsatilla patens ISSR markers : regenerants/plants and seedlings from Busko-Zdrój/plants from Kolimagi - concept
DOI: 10.6084/m9.figshare.14674095.v1
title: Chronic radiation exposure aggravates atherosclerosis by stimulating neutrophil infiltration

description: Radiation exposure is known to increase the risk of chronic inflammatory diseases, such as atherosclerosis, by modulating inflammation. To investigate the infiltration of leukocytes in radiation-aggravated atherosclerosis, we examined low-density lipoprotein receptor-deficient (Ldlr–/–) mice and C57BL/6j mice after exposure to 0.5 or 1 Gy radiation over 16 weeks. We found that radiation exposure induced atherosclerosis development in Ldlr–/– mice, as demonstrated by increased lipid-laden plaque size, reactive oxygen species levels, and levels of the pro-inflammatory cytokines, IL-1β and TNF-α, in the aortas and spleens. Total plasma cholesterol, triglyceride, and LDL cholesterol levels were also increased by radiation exposure, along with cardiovascular risk. We also showed dose-dependent increases in neutrophils and monocytes that coincided with a reduction in lymphocytes in the spleens of Ldlr–/– mice. The correlation between the infiltration of leukocytes and cytokine production was also confirmed in the hearts and spleens of these mice. We concluded that chronic radiation exposure increased the production of pro-inflammatory mediators, which was associated with the migration of neutrophils and inflammatory monocytes into sites of atherosclerosis. Thus, our data suggest that the accumulation of neutrophils and inflammatory monocytes, together with the reduction of lymphocytes, contribute to aggravated atherosclerosis in Ldlr–/– mice under prolonged exposure to radiation.
DOI: 10.6084/m9.figshare.14674095
title: Chronic radiation exposure aggravates atherosclerosis by stimulating neutrophil infiltration

description: Radiation exposure is known to increase the risk of chronic inflammatory diseases, such as atherosclerosis, by modulating inflammation. To investigate the infiltration of leukocytes in radiation-aggravated atherosclerosis, we examined low-density lipoprotein receptor-deficient (Ldlr–/–) mice and C57BL/6j mice after exposure to 0.5 or 1 Gy radiation over 16 weeks. We found that radiation exposure induced atherosclerosis development in Ldlr–/– mice, as demonstrated by increased lipid-laden plaque size, reactive oxygen species levels, and levels of the pro-inflammatory cytokines, IL-1β and TNF-α, in the aortas and spleens. Total plasma cholesterol, triglyceride, and LDL cholesterol levels were also increased by radiation exposure, along with cardiovascular risk. We also showed dose-dependent increases in neutrophils and monocytes that coincided with a reduction in lymphocytes in the spleens of Ldlr–/– mice. The correlation between the infiltration of leukocytes and cytokine production was also confirmed in the hearts and spleens of these mice. We concluded that chronic radiation exposure increased the production of pro-inflammatory mediators, which was associated with the migration of neutrophils and inflammatory monocytes into sites of atherosclerosis. Thus, our data suggest that the accumulation of neutrophils and inflammatory monocytes, together with the reduction of lymphocytes, contribute to aggravated atherosclerosis in Ldlr–/– mice under prolonged exposure to radiation.
DOI: 10.6084/m9.figshare.14802775
title: RENEB/EURADOS field exercise 2019: robust dose estimation under outdoor conditions based on the dicentric chromosome assay

description: Biological and/or physical assays for retrospective dosimetry are valuable tools to recover the exposure situation and to aid medical decision making. To further validate and improve such biological and physical assays, in 2019, EURADOS Working Group 10 and RENEB performed a field exercise in Lund, Sweden, to simulate various real-life exposure scenarios. For the dicentric chromosome assay (DCA), blood tubes were located at anthropomorphic phantoms positioned in different geometries and were irradiated with a 1.36 TBq <sup>192</sup>Ir-source. For each exposure condition, dose estimates were provided by at least one laboratory and for four conditions by 17 participating RENEB laboratories. Three radio-photoluminescence glass dosimeters were placed at each tube to assess reference doses. The DCA results were homogeneous between participants and matched well with the reference doses (≥95% of estimates within ±0.5 Gy of the reference). For samples close to the source systematic underestimation could be corrected by accounting for exposure time. Heterogeneity within and between tubes was detected for reference doses as well as for DCA doses estimates. The participants were able to successfully estimate the doses and to provide important information on the exposure scenarios under conditions closely resembling a real-life situation.
DOI: 10.6084/m9.figshare.14802775.v2
title: RENEB/EURADOS field exercise 2019: robust dose estimation under outdoor conditions based on the dicentric chromosome assay

description: Biological and/or physical assays for retrospective dosimetry are valuable tools to recover the exposure situation and to aid medical decision making. To further validate and improve such biological and physical assays, in 2019, EURADOS Working Group 10 and RENEB performed a field exercise in Lund, Sweden, to simulate various real-life exposure scenarios. For the dicentric chromosome assay (DCA), blood tubes were located at anthropomorphic phantoms positioned in different geometries and were irradiated with a 1.36 TBq <sup>192</sup>Ir-source. For each exposure condition, dose estimates were provided by at least one laboratory and for four conditions by 17 participating RENEB laboratories. Three radio-photoluminescence glass dosimeters were placed at each tube to assess reference doses. The DCA results were homogeneous between participants and matched well with the reference doses (≥95% of estimates within ±0.5 Gy of the reference). For samples close to the source systematic underestimation could be corrected by accounting for exposure time. Heterogeneity within and between tubes was detected for reference doses as well as for DCA doses estimates. The participants were able to successfully estimate the doses and to provide important information on the exposure scenarios under conditions closely resembling a real-life situation.