cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.833115
title: Temperature Dependent Effects of Elevated CO2 on Shell Composition and Mechanical Properties of Hydroides elegans: Insights from a Multiple Stressor Experiment

description: The majority of marine benthic invertebrates protect themselves from predators by producing calcareous tubes or shells that have remarkable mechanical strength. An elevation of CO2 or a decrease in pH in the environment can reduce intracellular pH at the site of calcification and thus interfere with animal's ability to accrete CaCO3. In nature, decreased pH in combination with stressors associated with climate change may result in the animal producing severely damaged and mechanically weak tubes. This study investigated how the interaction of environmental drivers affects production of calcareous tubes by the serpulid tubeworm, Hydroides elegans. In a factorial manipulative experiment, we analyzed the effects of pH (8.1 and 7.8), salinity (34 and 27), and temperature (23°C and 29°C) on the biomineral composition, ultrastructure and mechanical properties of the tubes. At an elevated temperature of 29°C, the tube calcite/aragonite ratio and Mg/Ca ratio were both increased, the Sr/Ca ratio was decreased, and the amorphous CaCO3 content was reduced. Notably, at elevated temperature with decreased pH and reduced salinity, the constructed tubes had a more compact ultrastructure with enhanced hardness and elasticity compared to decreased pH at ambient temperature. Thus, elevated temperature rescued the decreased pH-induced tube impairments. This indicates that tubeworms are likely to thrive in early subtropical summer climate. In the context of climate change, tubeworms could be resilient to the projected near-future decreased pH or salinity as long as surface seawater temperature rise at least by 4°C.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-06-03.
description: Supplement to: Chan, B S Vera; Thiyagarajan, Vengatesen; Lu, Xingwen; Zhang, Tong; Shih, Kaimin (2013): Temperature Dependent Effects of Elevated CO2 on Shell Composition and Mechanical Properties of Hydroides elegans: Insights from a Multiple Stressor Experiment. PLoS ONE, 8(11), e78945
DOI: 10.1594/pangaea.833887
title: Hysteresis between coral reef calcification and the seawater aragonite saturation state

description: Some predictions of how ocean acidification (OA) will affect coral reefs assume a linear functional relationship between the ambient seawater aragonite saturation state (Omega a) and net ecosystem calcification (NEC). We quantified NEC in a healthy coral reef lagoon in the Great Barrier Reef during different times of the day. Our observations revealed a diel hysteresis pattern in the NEC versus Omega a relationship, with peak NEC rates occurring before the Omega a peak and relatively steady nighttime NEC in spite of variable Omega a. Net ecosystem production had stronger correlations with NEC than light, temperature, nutrients, pH, and Omega a. The observed hysteresis may represent an overlooked challenge for predicting the effects of OA on coral reefs. If widespread, the hysteresis could prevent the use of a linear extrapolation to determine critical Omega a threshold levels required to shift coral reefs from a net calcifying to a net dissolving state.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-07-08.
description: Supplement to: McMahon, Ashly; Santos, Isaac R; Cyronak, Tyler; Eyre, Bradley D (2013): Hysteresis between coral reef calcification and the seawater aragonite saturation state. Geophysical Research Letters, 40(17), 4675-4679
DOI: 10.1594/pangaea.833970
title: Permeable coral reef sediment dissolution driven by elevated pCO2 and pore water advection

description: Ocean acidification (OA) is expected to drive the transition of coral reef ecosystems from net calcium carbonate (CaCO3) precipitating to net dissolving within the next century. Although permeable sediments represent the largest reservoir of CaCO3 in coral reefs, the dissolution of shallow CaCO3 sands under future pCO2 levels has not been measured under natural conditions. In situ, advective chamber incubations under elevated pCO2 (~800 µatm) shifted the sediments from net precipitating to net dissolving. Pore water advection more than doubled dissolution rates (1.10 g CaCO3/m**2/day) when compared to diffusive conditions (0.42 g CaCO3/m**2 /day). Sediment dissolution could reduce net ecosystem calcification rates of the Heron Island lagoon by 8% within the next century, which is equivalent to a 25% reduction in the global average calcification rate of coral lagoons. The dissolution of CaCO3 sediments needs to be taken into account in order to address how OA will impact the net accretion of coral reefs under future predicted increases in CO2.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-07-11.
description: Supplement to: Cyronak, Tyler; Santos, Isaac R; Eyre, Bradley D (2013): Permeable coral reef sediment dissolution driven by elevated pCO2 and pore water advection. Geophysical Research Letters, 40(18), 4876–4881
DOI: 10.1594/pangaea.859058
title: Consistent increase in dimethyl sulfide (DMS) in response to high CO2 in five shipboard bioassays from contrasting NW European waters

description: The ubiquitous marine trace gas dimethyl sulfide (DMS) comprises the greatest natural source of sulfur to the atmosphere and is a key player in atmospheric chemistry and climate. We explore the short-term response of DMS production and cycling and that of its algal precursor dimethyl sulfoniopropionate (DMSP) to elevated carbon dioxide (CO2) and ocean acidification (OA) in five 96 h shipboard bioassay experiments. Experiments were performed in June and July 2011, using water collected from contrasting sites in NW European waters (Outer Hebrides, Irish Sea, Bay of Biscay, North Sea). Concentrations of DMS and DMSP, alongside rates of DMSP synthesis and DMS production and consumption, were determined during all experiments for ambient CO2 and three high-CO2 treatments (550, 750, 1000 µatm). In general, the response to OA throughout this region showed little variation, despite encompassing a range of biological and biogeochemical conditions. We observed consistent and marked increases in DMS concentrations relative to ambient controls (110% (28-223%) at 550 µatm, 153% (56-295%) at 750 µatm and 225% (79-413%) at 1000 µatm), and decreases in DMSP concentrations (28% (18-40%) at 550 µatm, 44% (18-64%) at 750 µatm and 52% (24-72%) at 1000 µatm). Significant decreases in DMSP synthesis rate constants (µDMSP /d) and DMSP production rates (nmol/d) were observed in two experiments (7-90% decrease), whilst the response under high CO2 from the remaining experiments was generally indistinguishable from ambient controls. Rates of bacterial DMS gross consumption and production gave weak and inconsistent responses to high CO2. The variables and rates we report increase our understanding of the processes behind the response to OA. This could provide the opportunity to improve upon mesocosm-derived empirical modelling relationships and to move towards a mechanistic approach for predicting future DMS concentrations.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-03-18.
DOI: 10.1594/pangaea.887706
title: Seawater carbonate chemistry and competition between the scleractinian corals Galaxea fascicularis and Acropora hyacinthus

description: Ocean acidification is expected to affect coral reefs in multiple ways, in part, by depressing the calcification of scleractinian corals. To evaluate how coral communities will respond to ocean acidification, research into the effects on ecological processes determining community structure is now needed. The present study focused on corals utilizing soft tissues (i.e., mesenterial filaments) as agonistic mechanism, and evaluated their ability to compete for space under ocean acidification. Using aquarium-reared specimens in Monaco, single polyps of Galaxea fascicularis were paired with branch tips of Acropora hyacinthus to stimulate competitive interactions, which were evaluated through the production and use of mesenterial filaments in causing tissue damage under ambient (600 µatm) and elevated pCO2 (1200 µatm). At 1200 µatm pCO2, and when paired with A. hyacinthus, the extrusion of mesenterial filaments from G. fascicularis occurred 2 days earlier than under ambient pCO2, although ultimately the mesenterial filaments caused the same amount of tissue necrosis on A. hyacinthus under both pCO2 regimes after 7 days. This outcome supports the hypothesis that some kinds of competitive mechanisms utilized by scleractinian corals (i.e., mesenterial filaments) will be unaffected by short exposure to pCO2 as high as 1200 ?atm.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-03-27.
description: Supplement to: Evensen, Nicolas R; Edmunds, Peter J (2018): Effect of elevated pCO2 on competition between the scleractinian corals Galaxea fascicularis and Acropora hyacinthus. Journal of Experimental Marine Biology and Ecology, 500, 12-17
DOI: 10.1594/pangaea.887792
title: Seawater carbonate chemistry and benthic primary production and inorganic nitrogen fluxes in two coastal sediments

description: Ocean acidification may alter the cycling of nitrogen in coastal sediment and so the sediment-seawater nitrogen flux, an important driver of pelagic productivity. To investigate how this perturbation affects the fluxes of NOX- (nitrite/nitrate), NH4+ and O2, we incubated estuarine sand and subtidal silt in recirculating seawater with a CO2-adjusted pH of 8.1 and 7.9. During a 41-day incubation, the seawater kept at pH 8.1 lost 97% of its NOX- content but the seawater kept at pH 7.9 lost only 18%. Excess CO2 increased benthic photosynthesis. In the silt, this was accompanied by a reversal of the initial NOX- efflux into influx. The estuarine sand sustained its initial NOX- influx but, by the end of the incubation, released more NH4+ at pH 7.9 than at pH 8.1. We hypothesise that these effects share a common cause; excess CO2 increased the growth of benthic microalgae and so nutrient competition with ammonia oxidising bacteria (AOB). In the silt, diatoms likely outcompeted AOB for NH4+ and photosynthesis increased the dark/light fluctuations in the pore water oxygenation inhibiting nitrification and coupled nitrification/denitrification. If this is correct, then excess CO2 may lead to retention of inorganic nitrogen adding to the pressures of increasing coastal eutrophication.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-03-28.
description: Supplement to: Vopel, Kay; Del-Río, Vopel; Pilditch, Conrad A (2018): Effects of CO2 enrichment on benthic primary production and inorganic nitrogen fluxes in two coastal sediments. Scientific Reports, 8(1)
DOI: 10.1594/pangaea.889803
title: Seawater carbonate chemistry and photosynthesis of seagrass Zostera japonica and Zostera marina

description: Photosynthesis and respiration are vital biological processes that shape the diurnal variability of carbonate chemistry in nearshore waters, presumably ameliorating (daytime) or exacerbating (nighttime) short-term acidification events, which are expected to increase in severity with ocean acidification (OA). Biogenic habitats such as seagrass beds have the capacity to reduce CO2 concentration and potentially provide refugia from OA. Further, some seagrasses have been shown to increase their photosynthetic rate in response to enriched total CO2 (TCO2). Therefore, the ability of seagrass to mitigate OA may increase as concentrations of TCO2 increase. In this study, we exposed native Zostera marina and non-native Zostera japonica seagrasses from Padilla Bay, WA (USA) to various levels of irradiance and TCO2. Our results indicate that the average maximum net photosynthetic rate (Pmax) for Z. japonica as a function of irradiance and TCO2 was 3x greater than Z. marina when standardized to chlorophyll (360 ± 33 μmol TCO2 mg/chl/h and 113 ± 10 μmol TCO2 mg/chl/h, respectively). Additionally, Z. japonica increased its Pmax ~50% when TCO2 increased from 1,770 to 2,051 μmol TCO2/kg. In contrast, Z. marina did not display an increase in Pmax with higher TCO2, possibly due to the variance of photosynthetic rates at saturating irradiance within TCO2 treatments (coefficient of variation: 30–60%) relative to the range of TCO2 tested. Our results suggest that Z. japonica can affect the OA mitigation potential of seagrass beds, and its contribution may increase relative to Z. marina as oceanic TCO2 rises. Further, we extended our empirical results to incorporate various biomass to water volume ratios in order to conceptualize how these additional attributes affect changes in carbonate chemistry. Estimates show that the change in TCO2 via photosynthetic carbon uptake as modeled in this study can produce positive diurnal changes in pH and aragonite saturation state that are on the same order of magnitude as those estimated for whole seagrass systems. Based on our results, we predict that seagrasses Z. marina and Z. japonica both have the potential to produce short-term changes in carbonate chemistry, thus offsetting anthropogenic acidification when irradiance is saturating.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-02.
description: Supplement to: Miller, Cale A; Yang, Sylvia; Love, Brooke A (2017): Moderate Increase in TCO2 Enhances Photosynthesis of Seagrass Zostera japonica, but Not Zostera marina: Implications for Acidification Mitigation. Frontiers in Marine Science, 4
DOI: 10.1594/pangaea.890965
title: Seawater carbonate chemistry and trophic flows and the living biomass of detritivores, herbivores, and carnivores

description: Global warming and ocean acidification are forecast to exert significant impacts on marine ecosystems worldwide. However, most of these projections are based on ecological proxies or experiments on single species or simplified food webs. How energy fluxes are likely to change in marine food webs in response to future climates remains unclear, hampering forecasts of ecosystem functioning. Using a sophisticated mesocosm experiment, we model energy flows through a species-rich multilevel food web, with live habitats, natural abiotic variability, and the potential for intra- and intergenerational adaptation. We show experimentally that the combined stress of acidification and warming reduced energy flows from the first trophic level (primary producers and detritus) to the second (herbivores), and from the second to the third trophic level (carnivores). Warming in isolation also reduced the energy flow from herbivores to carnivores, the efficiency of energy transfer from primary producers and detritus to herbivores and detritivores, and the living biomass of detritivores, herbivores, and carnivores. Whilst warming and acidification jointly boosted primary producer biomass through an expansion of cyanobacteria, this biomass was converted to detritus rather than to biomass at higher trophic levels-i.e., production was constrained to the base of the food web. In contrast, ocean acidification affected the food web positively by enhancing trophic flow from detritus and primary producers to herbivores, and by increasing the biomass of carnivores. Our results show how future climate change can potentially weaken marine food webs through reduced energy flow to higher trophic levels and a shift towards a more detritus-based system, leading to food web simplification and altered producer–consumer dynamics, both of which have important implications for the structuring of benthic communities.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-23.
description: Supplement to: Ullah, Hadayet; Nagelkerken, Ivan; Goldenberg, Silvan Urs; Fordham, Damien A; Loreau, Jean-Paul (2018): Climate change could drive marine food web collapse through altered trophic flows and cyanobacterial proliferation. PLoS Biology, 16(1), e2003446
DOI: 10.1594/pangaea.837249
title: Biomineralization control related to population density under ocean acidification

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-10-23.
DOI: 10.1594/pangaea.891261
title: Seawater carbonate chemistry and calcification in Caribbean reef-building corals

description: Projected increases in ocean pCO2 levels are anticipated to affect calcifying organisms more rapidly and to a greater extent than other marine organisms. The effects of ocean acidification (OA) have been documented in numerous species of corals in laboratory studies, largely tested using flow-through exposure systems. We developed a recirculating ocean acidification exposure system that allows precise pCO2 control using a combination of off-gassing measures including aeration, water retention devices, venturi injectors, and CO2 scrubbing. We evaluated the recirculating system performance in off-gassing effectiveness and maintenance of target pCO2 levels over an 84-day experiment. The system was used to identify changes in calcification and tissue growth in response to elevated pCO2 (1000 μatm) in three reef-building corals of the Caribbean: Pseudodiploria clivosa, Montastraea cavernosa, and Orbicella faveolata. All three species displayed an overall increase in net calcification over the 84-day exposure period regardless of pCO2 level (control + 0.28–1.12 g, elevated pCO2 + 0.18–1.16 g), and the system was effective at both off-gassing acidified water to ambient pCO2 levels, and maintaining target elevated pCO2 levels over the 3-month experiment.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-23.
DOI: 10.1594/pangaea.892529
title: Seawater carbonate chemistry and predator–prey interactions of coral reef fish

description: Ocean acidification and warming, driven by anthropogenic CO2 emissions, are considered to be among the greatest threats facing marine organisms. While each stressor in isolation has been studied extensively, there has been less focus on their combined effects, which could impact key ecological processes. We tested the independent and combined effects of short-term exposure to elevated CO2 and temperature on the predator–prey interactions of a common pair of coral reef fishes (Pomacentrus wardi and its predator, Pseudochromis fuscus). We found that predator success increased following independent exposure to high temperature and elevated CO2. Overall, high temperature had an overwhelming effect on the escape behaviour of the prey compared with the combined exposure to elevated CO2 and high temperature or the independent effect of elevated CO2. Exposure to high temperatures led to an increase in attack and predation rates. By contrast, we observed little influence of elevated CO2 on the behaviour of the predator, suggesting that the attack behaviour of P. fuscus was robust to this environmental change. This is the first study to address how the kinematics and swimming performance at the basis of predator–prey interactions may change in response to concurrent exposure to elevated CO2 and high temperatures and represents an important step to forecasting the responses of interacting species to climate change.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-07-12.
description: Supplement to: Allan, Bridie J M; Domenici, Paolo; Watson, Sue Ann; Munday, Philip L; McCormick, Mark I (2017): Warming has a greater effect than elevated CO2 on predator–prey interactions in coral reef fish. Proceedings of the Royal Society B-Biological Sciences, 284(1857), 20170784
DOI: 10.1594/pangaea.884088
title: Morphological data of experimental animals of wild and selected Saccostrea glomerata

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-12-14.