cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15769314
title: MALDI-TOF mass spectra of Enterococcus faecium isolates from the Institute of Medical Microbiology, Immunology and Hygiene (MIH) at the Technical University of Munich

description: This repository contains the MALDI-TOF mass spectra used in the study titled "Early detection of ampicillin susceptibility in Enterococcus faecium with MALDI-TOF MS and machine learning". The spectra were collected between August 2021 and May 2025 during routine diagnostic workflows at the Institute of Medical Microbiology, Immunology and Hygiene (MIH) at the Technical University of Munich. In total, the dataset includes spectra from 2,109 ampicillin-resistant and 303 ampicillin-susceptible E. faecium isolates.

Folder structure: 

TUM_spectra├── preprocessed│   ├── ampicillin_resistant│   └── ampicillin_susceptible└── raw    ├── ampicillin_resistant    └── ampicillin_susceptible

The data are organized in a top-level folder named "TUM_spectra", which includes two main subfolders:

"raw" - unprocessed spectra

"preprocessed" - square-root transformed, smoothed, baseline-corrected, intensity-normalized spectra.

Each of these folders contains two subfolders for ampicillin-resistant and ampicillin-susceptible isolate spectra.

Note:  MS-UMG dataset spectra used in the same study are available at https://doi.org/10.5281/zenodo.13693799.
DOI: 10.5281/zenodo.15769315
title: MALDI-TOF mass spectra of Enterococcus faecium isolates from the Institute of Medical Microbiology, Immunology and Hygiene (MIH) at the Technical University of Munich

description: This repository contains the MALDI-TOF mass spectra used in the study titled "Early detection of ampicillin susceptibility in Enterococcus faecium with MALDI-TOF MS and machine learning". The spectra were collected between August 2021 and May 2025 during routine diagnostic workflows at the Institute of Medical Microbiology, Immunology and Hygiene (MIH) at the Technical University of Munich. In total, the dataset includes spectra from 2,109 ampicillin-resistant and 303 ampicillin-susceptible E. faecium isolates.

Folder structure: 

TUM_spectra├── preprocessed│   ├── ampicillin_resistant│   └── ampicillin_susceptible└── raw    ├── ampicillin_resistant    └── ampicillin_susceptible

The data are organized in a top-level folder named "TUM_spectra", which includes two main subfolders:

"raw" - unprocessed spectra

"preprocessed" - square-root transformed, smoothed, baseline-corrected, intensity-normalized spectra.

Each of these folders contains two subfolders for ampicillin-resistant and ampicillin-susceptible isolate spectra.

Note:  MS-UMG dataset spectra used in the same study are available at https://doi.org/10.5281/zenodo.13693799.
DOI: 10.3535/8d5-9fq-x96
title: Tethea (Tethea) Ochsenheimer, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8me-yz7-t80
title: Tethea (Tethea) Ochsenheimer, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48597/sqcu-yhb8
title: Measurement of Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.17026/dans-xkh-594c
title: Woerden Barwoudsewaarder 87 en 89a Booronderzoek
title: Barwoutswaarder 87 en 89a, gemeente Woerden

description: &lt;p&gt;ADC ArcheoProjecten heeft in oktober en november 2013 ten behoeve van de ontwikkeling van een bedrijventerrein een bureauonderzoek en Inventariserend veldonderzoek uitgevoerd op de locatie Barwoutswaarder 87 en 89a in de gemeente Woerden.&lt;/p&gt;&lt;p&gt;Het plangebied ligt in een gebied waar een gemeentelijk archeologisch beleid is vastgesteld. Op grond van dit beleid valt het plangebied in een zone met een hoge archeologische verwachting. Om in deze zone een omgevingsvergunning te kunnen verkrijgen, dient de initiatiefnemer een rapport te overleggen waarin naar oordeel van de bevoegde overheid de archeologische waarde van het plangebied voldoende is vastgesteld. In het kader van dit proces heeft het in dit rapport beschreven onderzoek plaatsgevonden. &lt;/p&gt;&lt;p&gt;Op basis van het bureauonderzoek werden op oeverafzettingen van de Oude Rijn voornamelijk resten uit de Romeinse tijd verwacht, waaronder tevens restanten van de limesweg. Teneinde deze verwachting te toetsen en aan te vullen werd in het plangebied een verkennend en karterend booronderzoek uitgevoerd.&lt;/p&gt;&lt;p&gt;Op basis van het booronderzoek bleek er inderdaad sprake te zijn van de aanwezigheid van oeverafzettingen van de Oude Rijn. Hierop bleek zich een ontkalkt niveau te bevinden, dat op grond van het voorkomen van onder meer een fragment inheems Romeins aardewerk, alsmede houtskool- en onverbrande botfragmenten kan worden gekenmerkt als een archeologische laag. Mogelijk betreft dit de Limesweg met bijbehorende greppel.&lt;br&gt;De bodem ter plaatse van de boringen 1, 2 en 3 bleek diep omgewerkt te zijn, als gevolg daarvan is de archeologische laag daar niet (meer) aanwezig.&lt;/p&gt;&lt;p&gt;ADC ArcheoProjecten adviseert om bij de nieuwbouw uitsluitend gebruik te maken van de bestaande poerenfundering, om verstoring van archeologische waarden tot een minimum te beperken. In dat geval is nader onderzoek niet nodig. Wanneer dit technisch niet haalbaar is, wordt geadviseerd een inventariserend veldonderzoek uit te voeren door middel van het aanleggen van proefsleuven (IVO-P), teneinde gaafheid, omvang, datering en conservering van archeologische resten te onderzoeken. Door twee parallelle proefsleuven met een breedte van 4 m aan te leggen over de volle lengte van het terrein, wordt ca. 10% van de totale oppervlakte onderzocht. Gezien het verwachte verloop van de limesweg ligt het voor de hand de proefsleuven noord-zuid georiënteerd aan te leggen.&lt;/p&gt;&lt;p&gt;De exacte invulling van de werkzaamheden dient te worden vastgelegd in een door de bevoegde overheid goed te keuren Programma van Eisen (PvE).&lt;/p&gt;&lt;p&gt;Wij wijzen u erop dat de bevoegde overheid op basis van dit rapport een selectiebesluit neemt. De mogelijkheid bestaat dat dit selectiebesluit afwijkt van het door ons opgestelde advies.&lt;/p&gt;
description: &lt;p&gt;Een Bureauonderzoek en Inventariserend Veldonderzoek in de vorm van een verkennend en karterend booronderzoek&lt;/p&gt;
DOI: 10.3535/hye-cc3-vsh
title: Acrobasis obliqua Zeller, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48597/vqr9-dvjp
title: Measurement of Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.3535/6yv-667-85a
title: Melitaea diamina (Lang, 1789)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c9w-mzy-qbc
title: Achlya flavicornis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48597/956f-hc7j
title: Measurement of Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.17026/dans-xkh-5fuy
title: PAN-00076208 - coin/coin-related, Tetricus I (271-274), naar, antoninianus

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00076208&lt;/p&gt;
description: Modified: 2023-06-13T16:43:57+02:00
DOI: 10.3535/n0a-8m6-trj
title: Ochropacha duplaris (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rg2-yxy-blk
title: Aglia tau Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48597/a3qp-r38z
title: Measurement of Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.48597/du5w-b443
title: Measurement of Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.3535/jjp-n8t-35s
title: Lymantria (Porthetria) dispar (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x5f-4q0-p85
title: Drepana falcataria (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48597/f6x8-p5v4
title: Measurement of Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.17026/dans-xkh-66pp
title: Groningen, Zorgwijk (Gemeente Groningen, Gr.)
title: Een Inventariserend Archeologisch Veldonderzoek

description: &lt;p&gt;Archeologisch veldonderzoek door middel van grondboringen.&lt;br&gt;Aanleiding is geplande verlegging van een sloot en een leiding.&lt;br&gt;Terrein maakte voorheen deel uit van de tuin van Ulgersmaborg, afgebroken in 1787.&lt;br&gt;Bij boringen is dikke cultuurlaag gevonden. Hierin onder meer een veenlaag die de vulling van een spoor lijkt en een scherf aardewerk die mogelijk middeleeuws is. &lt;br&gt;Advies om geen bodemingrepen te ondernemen en toch dan eerst proefsleufonderzoek.&lt;/p&gt;
DOI: 10.3535/n6k-q12-eg1
title: Orgyia (Thylacigyna) antiquoides (Hübner, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48597/pm44-zvpt
title: Measurement of Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.3535/8r8-50b-hvy
title: Orgyia (Orgyia) antiqua (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z68-zex-djx
title: Gastropacha (Gastropacha) quercifolia (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48597/tjty-6a6y
title: Measurement of Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.17026/dans-xkh-77vh
title: PAN-00015053 - one-ribbed La Tène bracelet variant H3a

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00015053&lt;/p&gt;
description: Modified: 2019-09-10T10:32:06+02:00
DOI: 10.3535/yad-817-27v
title: Malacosoma castrensis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48597/we77-vvst
title: Measurement of Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.3535/5pj-ft5-z7j
title: Acleris lipsiana ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f6p-ma9-mv4
title: Macrothylacia rubi (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48597/g6wr-e2mu
title: Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.48597/j2wg-bhas
title: Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.17026/dans-xkh-794d
title: Heerdweg 5 te Uithuizen (gemeente Eemsmond). Een archeologisch bureauonderzoek

description: &lt;p&gt;Bureauonderzoek&lt;/p&gt;
description: Date: 20/01/2016 (veldwerk)
DOI: 10.3535/7sn-g1s-7zp
title: Macrothylacia rubi (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q19-9zg-pmb
title: Tethea (Tethea) Ochsenheimer, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48597/eyy3-gzp9
title: Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.3535/m73-4a1-ta3
title: Orgyia (Orgyia) antiqua (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wxx-244-rde
title: Tethea (Tethea) ocularis (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48597/23nr-jm7a
title: Measurement of Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.17026/dans-xkh-7qdx
title: PAN-00009374 - early medieval enamelled disc brooch variant A9

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00009374&lt;/p&gt;
DOI: 10.3535/n1n-q6p-9nf
title: Lymantria (Porthetria) dispar (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nmz-ct5-za0
title: Poecilocampa populi Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48597/3heq-6rgn
title: Measurement of Inorganics in precipitation at Treungen

description: Measurement of Inorganics in precipitation at Treungen
DOI: 10.15468/dl.r5fjdr
title: Occurrence Download

description: A dataset containing 2063447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carcharodus alceae (Esper, 1780), Carterocephalus palaemon (Pallas, 1771), Erynnis tages (Linnaeus, 1758), Hesperia comma Linnaeus, 1758, Heteropterus morpheus (Pallas, 1771), Ochlodes venata (Bremer & Grey, 1853), Pyrgus alveus (Hübner, 1802), Pyrgus armoricanus (Oberthür, 1910), Pyrgus fritillarius (Poda, 1761), Pyrgus malvae (Linnaeus, 1758), Pyrgus serratulae (Rambur, 1839), Spialia sertorius (Hoffmannsegg, 1804), Thymelicus acteon (von Rottemburg, 1775), Thymelicus lineola (Ochsenheimer, 1808), Thymelicus sylvestris (Poda, 1761), Iphiclides podalirius (Linnaeus, 1758), Papilio machaon Linnaeus, 1758, Hamearis lucina (Linnaeus, 1758))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "OccurrenceStatus is one of (Present)"
 ]
}

 The dataset includes 2063447 records from 3225 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010048-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ypv6n7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coraciiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-30 -30,0 -30,0 0,-30 0,-30 -30))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060924-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc233pwt
title: CCDC 1939976: Experimental Crystal Structure Determination

description: Related Article: Krishnamoorthy Bellie Sundaram|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc233pxv
title: CCDC 1939977: Experimental Crystal Structure Determination

description: Related Article: Krishnamoorthy Bellie Sundaram|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dbrdx
title: CCDC 2214869: Experimental Crystal Structure Determination

description: Related Article: Jia-Tian Liu, Jiashu Liu, Qi-Long Hu, Jian Li|2025|Org.Chem.Front.|12|5591|doi:10.1039/D5QO00671F
description: Related Article: Jia-Tian Liu, Jiashu Liu, Qi-Long Hu, Jian Li|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jmgh4
title: CCDC 2342406: Experimental Crystal Structure Determination

description: Related Article: Annisa Indah Reza, Kento Iwai, Nagatoshi Nishiwaki|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nqt3b
title: CCDC 2464782: Experimental Crystal Structure Determination

description: Related Article: Schollmeyer, Dieter, Opatz, Till|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nqv5f
title: CCDC 2464815: Experimental Crystal Structure Determination

description: Related Article: Logan J. Frazier, Jeanette A. Krause, Michael J. Baldwin|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13145/bacdive108472.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100249.10fu
title: SH0100249.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive108472.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100250.10fu
title: SH0100250.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive108473.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108473.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100251.10fu
title: SH0100251.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive108474.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108474.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.