cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12948533.v2
title: IDENTI~1.DOC

description: this is a retrospective study using stored blood culture isolates to compare the diagnostic techniques in identification of bloodstream infection; the techniques under analysis are FilmArray polymerase chain reaction machine and MicroScan 40 plus machine compared with Analytical profile index which is routinely used in developing countries as a gold standard for identification of blood culture.In this study we are trying to establish which technique is suitable for diagnosis of bloodstream infection in terms of senstivity, accuracy, turn around time and cost
DOI: 10.26106/b59m-v063
title: Data file for the article : everyday memory failures across adulthood : implications for the age prospective memory paradox, PLOS ONE 2020 - concept
DOI: 10.6084/m9.figshare.12993080
title: Supplemental Material.doc

description: detailed CT and ELISA protocals, comaparisons of medications<br>
DOI: 10.6084/m9.figshare.12993080.v1
title: Supplemental Material.doc

description: detailed CT and ELISA protocals, comaparisons of medications<br>
DOI: 10.21227/8jp5-fs43
title: GIB-UVa ERP-BCI dataset

description: This dataset contains EEG signals from 73 subjects (42 healthy; 31 disabled) using an ERP-based speller to control differentbrain-computer interface (BCI) applications. The dataset is divided in 3 sets (i.e., training set, validation set and test set) according to Santamaría-Vázquez et al., 2020 (link to article):Training set: contains data from 34 healthy subjectsValidation set: contains data from 8 healthy subjectsTest set: contains data from 31 motor disabled subjectsAdditionally, you will find the results of the original studybroken down by subject, the code to build the deep-learning models used inSantamaría-Vázquez et al., 2020 (i.e., EEG-Inception, EEGNet, DeepConvNet, CNN-BLSTM)and useful scripts to load the dataset or train EEG-Inception.
DOI: 10.5281/zenodo.4013336
title: Data: Effects of seismic airgun playbacks on swimming patterns and behavioural states of Atlantic cod in a net pen

description: Data abstract: We tracked individual fish using acoustic telemetry and exposed them to sound. Here, we provide (1) the raw acoustic tag detections, (2) the filtered/processed tag detections which served as an input for YAPS (Yet Another Positioning Solver), (3) the positions of the hydrophones (acoustic tag receivers), and (4) the positions of the fish (output of YAPS) and other relevant covariates (sun elevation, tide and treatment period). Paper abstract: Anthropogenic sound can affect fish behaviour and physiology which may affect their well-being. However, it remains a major challenge to translate such effects to consequences for fitness at an individual and population level. For this, energy budget models have been developed, but suitable data to parametrize these models are lacking. A first step towards such parametrization concerns the objective quantification of behavioural states at high resolution. We experimentally exposed individual Atlantic cod (<em>Gadus morhua</em>) in a net pen to the playback of seismic airgun sounds. We demonstrated that individual cod in the net pen did not change their swimming patterns immediately at the onset of the sound exposure. However, several individuals changed their time expenditure in three different behavioural states during the 1 h exposure. This may be suitable input for energy budget models that allow predictions about fitness consequences of acoustic disturbance. Paper reference: Hubert, J., Campbell, J. A., Slabbekoorn, H. (2020). Effects of seismic airgun playbacks on swimming patterns and behavioural states of Atlantic cod in a net pen. <em>Mar. Pollut. Bull.</em> <strong>160</strong>, 111680. DOI:10.1016/j.marpolbul.2020.111680
description: This work was supported by the E&P Sound & Marine Life Joint Industry Programme.
DOI: 10.5281/zenodo.4013335
title: Data: Effects of seismic airgun playbacks on swimming patterns and behavioural states of Atlantic cod in a net pen

description: Data abstract: We tracked individual fish using acoustic telemetry and exposed them to sound. Here, we provide (1) the raw acoustic tag detections, (2) the filtered/processed tag detections which served as an input for YAPS (Yet Another Positioning Solver), (3) the positions of the hydrophones (acoustic tag receivers), and (4) the positions of the fish (output of YAPS) and other relevant covariates (sun elevation, tide and treatment period). Paper abstract: Anthropogenic sound can affect fish behaviour and physiology which may affect their well-being. However, it remains a major challenge to translate such effects to consequences for fitness at an individual and population level. For this, energy budget models have been developed, but suitable data to parametrize these models are lacking. A first step towards such parametrization concerns the objective quantification of behavioural states at high resolution. We experimentally exposed individual Atlantic cod (<em>Gadus morhua</em>) in a net pen to the playback of seismic airgun sounds. We demonstrated that individual cod in the net pen did not change their swimming patterns immediately at the onset of the sound exposure. However, several individuals changed their time expenditure in three different behavioural states during the 1 h exposure. This may be suitable input for energy budget models that allow predictions about fitness consequences of acoustic disturbance. Paper reference: Hubert, J., Campbell, J. A., Slabbekoorn, H. (2020). Effects of seismic airgun playbacks on swimming patterns and behavioural states of Atlantic cod in a net pen. <em>Mar. Pollut. Bull.</em> <strong>160</strong>, 111680. DOI:10.1016/j.marpolbul.2020.111680
description: This work was supported by the E&P Sound & Marine Life Joint Industry Programme.
DOI: 10.21227/7ya6-eh04
title: GIB-UVa ERP-BCI dataset

description: This dataset contains EEG signals from 73 subjects (42 healthy; 31 disabled) using an ERP-based speller to control differentbrain-computer interface (BCI) applications. The dataset is divided in 3 sets (i.e., training set, validation set and test set) according to Santamaría-Vázquez et al., 2020 (link to article):Training set: contains data from 34 healthy subjectsValidation set: contains data from 8 healthy subjectsTest set: contains data from 31 motor disabled subjectsAdditionally, you will find the results of the original studybroken down by subject, the code to build the deep-learning models used inSantamaría-Vázquez et al., 2020 (i.e., EEG-Inception, EEGNet, DeepConvNet, CNN-BLSTM)and useful scripts to load the dataset or train EEG-Inception.
DOI: 10.5281/zenodo.4045328
title: "What Influences Citizens' Expectations towards Digital Government?" - Research Data

description: This excel sheet contains the data from the survey entitled "What Influences Citizens' Expectations towards Digital Government?".
DOI: 10.5281/zenodo.4045327
title: "What Influences Citizens' Expectations towards Digital Government?" - Research Data

description: This excel sheet contains the data from the survey entitled "What Influences Citizens' Expectations towards Digital Government?".
DOI: 10.5517/ccdc.csd.cc25nqh2
title: CCDC 2015914: Experimental Crystal Structure Determination

description: Related Article: Saravanakumar Shanmuganathan, Carola Schulzke, Peter G. Jones, Joachim W. Heinicke|2020|J.Organomet.Chem.|926|121487|doi:10.1016/j.jorganchem.2020.121487
DOI: 10.6084/m9.figshare.12988679.v1
title: Public acceptance of treated wastewater and bio-solids survey responses.xlsx

description: These datasets present the responses of a two-version survey which aimed to investigate the public acceptance in the reuse of treated wastewater. It encompasses socio-demographic and psychologic factors as well as parameters related to water characteristics
DOI: 10.6084/m9.figshare.12988679
title: Public acceptance of treated wastewater and bio-solids survey responses

description: Public acceptance of treated wastewater and bio-solids survey responses: These datasets present the responses of a two-version survey which aimed to investigate the public acceptance in the reuse of treated wastewater. It encompasses socio-demographic and psychologic factors as well as parameters related to water characteristics
DOI: 10.6084/m9.figshare.12988679.v3
title: Public acceptance of treated wastewater and bio-solids survey responses

description: Public acceptance of treated wastewater and bio-solids survey responses: These datasets present the responses of a two-version survey which aimed to investigate the public acceptance in the reuse of treated wastewater. It encompasses socio-demographic and psychologic factors as well as parameters related to water characteristics
DOI: 10.6084/m9.figshare.12988679.v2
title: 10.6084/m9.figshare.12988679

description: Public acceptance of treated wastewater and bio-solids survey responses: These datasets present the responses of a two-version survey which aimed to investigate the public acceptance in the reuse of treated wastewater. It encompasses socio-demographic and psychologic factors as well as parameters related to water characteristics
DOI: 10.5445/ir/1000123853
title: Methodical support for the investigation of system behaviour with analysis techniques - Overcoming the non-transparency in embodiment design
DOI: 10.5281/zenodo.4045372
title: Dataset to study "Social dynamics of values, taboos, and perceived threats around sacred groves in Kurdistan, Iran"

description: This dataset includes the raw data of a survey of 205 local residents in Kurdistan province, Iran. The "Dataset" sheet presents respondents' socio-demographic characteristics (distance to Baneh city, age group, gender, formal education, traditional lifestyle) and Likert-scale answers (ranging from 1 to 5) on agreement with several statements on values, taboos, and perceived threats around sacred groves in Kurdistan. The full statements are cited in the "Statements" sheet. The complete method is described in: Plieninger, T., Quintas-Soriano, C., Torralba, M., Samani, M.K. & Shakeri, Z. (2020): Social dynamics of values, taboos, and perceived threats around sacred groves in Kurdistan, Iran. People and Nature, in press.
DOI: 10.5281/zenodo.4045371
title: Dataset to study "Social dynamics of values, taboos, and perceived threats around sacred groves in Kurdistan, Iran"

description: This dataset includes the raw data of a survey of 205 local residents in Kurdistan province, Iran. The "Dataset" sheet presents respondents' socio-demographic characteristics (distance to Baneh city, age group, gender, formal education, traditional lifestyle) and Likert-scale answers (ranging from 1 to 5) on agreement with several statements on values, taboos, and perceived threats around sacred groves in Kurdistan. The full statements are cited in the "Statements" sheet. The complete method is described in: Plieninger, T., Quintas-Soriano, C., Torralba, M., Samani, M.K. & Shakeri, Z. (2020): Social dynamics of values, taboos, and perceived threats around sacred groves in Kurdistan, Iran. People and Nature, in press.
DOI: 10.6084/m9.figshare.12937079
title: Ningxin-I Large Yellow Croaker SNP Array Raw Data and Scripts

description: Ningxin-I Large Yellow Croaker SNP Array Raw Data and Scripts
DOI: 10.6084/m9.figshare.12937079.v1
title: Ningxin-I Large Yellow Croaker SNP Array Raw Data and Scripts

description: Ningxin-I Large Yellow Croaker SNP Array Raw Data and Scripts
DOI: 10.6084/m9.figshare.10079144
title: Inhibition of copper-induced aggregation of human γD-crystallin by a diimine molecule and investigations on their molecular interactions

description: Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.10079144.v2
title: Inhibition of copper-induced aggregation of human γD-crystallin by a diimine molecule and investigations on their molecular interactions

description: Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.11338814
title: Cationic porphyrins as destabilizer of a G-quadruplex located at the promoter of human <i>MYH7 β</i> gene

description: G-quadruplex (GQ) architecture is adopted by guanine rich sequences, present throughout the eukaryotic genome including promoter locations and telomeric ends. The <i>in vivo</i> presence indicates their involvement and role in various biological processes. Various small ligands have been developed to interact and stabilize/destabilize G-quadruplex structures. Cationic porphyrins are among the most studied ligands, reported to bind and stabilize G-quadruplexes. Herein, we report the recognition and destabilization of a parallel G-quadruplex by porphyrins (TMPyP3 and TMPyP4). This G-quadruplex forming 23-nt G-rich sequence is in the promoter region of Human Myosin Heavy Chain β gene (<i>MYH7β</i>). Presence of various putative regulatory sequence elements (TATA Box, CCAAT, SP-1) located in the vicinity of this quadruplex motif, highlight its regulatory implications. Biophysical methods as Circular Dichroism Spectroscopy, UV-Absorption Spectroscopy, UV-Thermal Denaturation and Fluorescence Spectroscopy (steady as well as Time Resolved) have been used for studying the interaction and binding parameters. It is proposed that porphyrins have a destabilizing effect on the G-quadruplexes with parallel topology and a stronger binding specifically via intercalation mode is needed to cause destabilization. The study deals with better understanding and insights of DNA-Drug interactions in biological systems. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.11338814.v1
title: Cationic porphyrins as destabilizer of a G-quadruplex located at the promoter of human <i>MYH7 β</i> gene

description: G-quadruplex (GQ) architecture is adopted by guanine rich sequences, present throughout the eukaryotic genome including promoter locations and telomeric ends. The <i>in vivo</i> presence indicates their involvement and role in various biological processes. Various small ligands have been developed to interact and stabilize/destabilize G-quadruplex structures. Cationic porphyrins are among the most studied ligands, reported to bind and stabilize G-quadruplexes. Herein, we report the recognition and destabilization of a parallel G-quadruplex by porphyrins (TMPyP3 and TMPyP4). This G-quadruplex forming 23-nt G-rich sequence is in the promoter region of Human Myosin Heavy Chain β gene (<i>MYH7β</i>). Presence of various putative regulatory sequence elements (TATA Box, CCAAT, SP-1) located in the vicinity of this quadruplex motif, highlight its regulatory implications. Biophysical methods as Circular Dichroism Spectroscopy, UV-Absorption Spectroscopy, UV-Thermal Denaturation and Fluorescence Spectroscopy (steady as well as Time Resolved) have been used for studying the interaction and binding parameters. It is proposed that porphyrins have a destabilizing effect on the G-quadruplexes with parallel topology and a stronger binding specifically via intercalation mode is needed to cause destabilization. The study deals with better understanding and insights of DNA-Drug interactions in biological systems. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.12420968.v2
title: Benchmarking atlas-level data integration in single-cell genomics - integration task datasets (Immune and pancreas)

description: Pancreas, human immune cell, and human and mouse immune cell integration tasks from the manuscript "Benchmarking atlas-level data integration in single-cell genomics". <br><br>These datasets were aggregated from public datasets, cell annotations were harmonized or reannotated, and the data was consistently preprocessed using scran pooling and log+1 transformation. In the immune cell datasets an erythrocyte development trajectory was also annotated. Details on dataset preprocessing can be found in the paper and in the accompanying Github at https://www.github.com/theislab/scib.<br><br>Please cite the paper and the papers the individual datasets were aggregated from when using this data.<br><br>Note: the "complexBatch" version of the pancreas data was used in the paper. This version contains a higher resolution batch covariate and all batches were normaled jointly.<br>
DOI: 10.5284/1000134
title: The Augustinian Priory of St Mary, Norton Priory, Runcorn, Cheshire

description: The dataset comprises detailed records (in the form of databases) of stratigraphic data generated by the excavations, and the substantial parts of the material archive, including the medieval and later vessel glass, the medieval and later pottery, the medieval and later metalwork (copper alloy, iron, and lead objects), the bone and ivory objects, the wooden and leather objects of medieval and later date. Other elements of the material archive, for instance the medieval floor tiles and the medieval stonework, are described in full in the 2008 publication.  The dataset also includes a detailed catalogue of the skeletal evidence, complementing the more discursive account given in the publication.
DOI: 10.5287/bodleianh8x3.2
title: 2008 Tick1 Audio Corpus
DOI: 10.5284/1000141
title: The Mucking Anglo-Saxon cemeteries

description: The Anglo-Saxon cemeteries at Mucking, Essex, represent the burials of over 800 individuals from the 5th to early 7th centuries AD. The mixed rite Cemetery II is one of the largest and most complete Anglo-Saxon cemeteries yet excavated (282 inhumations, 463 cremation burials), while the partly destroyed Cemetery I included further significant inhumations.
DOI: 10.5061/dryad.3s92c/12
title: cliv_struct

description: Structure input file for X. clivii
DOI: 10.5061/dryad.3s92c/13
title: larg_struct

description: Structure input file for X. largeni
DOI: 10.5061/dryad.331sq/1
title: Alaskan coho salmon genotypes

description: Genotype data from nine microsatellite loci for 2584 coho salmon in 32 locations in Alaska.  This data file is formatted for use in the computer program GenePop v4.0. The genotypes in this file have NOT been standardized with other laboratories -- see readme file for further information.
DOI: 10.5061/dryad.3n148/1
title: Melampodium_Sericea_5S_spacer_complete

description: complete alignment of entire 5S rDNA spacer sequences of Melampodium sect. Melampodium; nexus file
DOI: 10.5061/dryad.3n148/2
title: Melampodium_Sericea_pgiCI_complete

description: complete alignment of partial pgiC paralogue 1 sequences of Melampodium sect. Melampodium; nexus file
DOI: 10.5061/dryad.3n148/3
title: Melampodium_Sericea_pgiCII_complete

description: complete alignment of partial pgiC paralogue 2 sequences of Melampodium sect. Melampodium; nexus file
DOI: 10.5061/dryad.cg872/1
title: Cel_EE_geneexpression_master

description: Contains gene expression data derived from qRT-PCR. See publication for methodological details. sample: The strain/line and biological replicate (e.g., 16EE1b is from strain 16EE1, replicate b; AB1 3 is from strain AB1, replicate 3). gene: The gene in which expression was assayed. plate: The reaction plate in which RT-PCR was performed; the experiment was performed on a total of five 96-well plates. ct: The threshold cycle (CT-value) for each sample. ctcontrol: The threshold cycle (CT-value) for reference gene using the same biological sample (template RNA) from the same reaction plate. deltact: The difference between the experimental and reference CT-values (experimental - reference)
DOI: 10.5061/dryad.cg872/2
title: EEPhenotypeData

description: Contains tail scores for individual worms of each strain reared at sixtemperatures. See publication for methodological details. ID: ID number for individual worm. Strain: Strain/line of each worm. Temp: Temperature at which each worm was raised (degrees C). Tail: Tail score (see Chandler, 2010, Heredity, 105, 473-482 for scoring details).
DOI: 10.5061/dryad.cg872/3
title: EEFitnessData

description: Contains tail scores and gonad phenotypes for individual worms of each strain reared at six temperatures. See publication for methodological details. ID: ID number for individual worm. Strain: Strain/line of each worm. Temp: Temperature at which each worm was raised (degrees C). Tail: Tail score (see Chandler, 2010, Heredity, 105, 473-482 for scoring details). Gonad: Gonad score for each worm, -1 = unscorable, 0 = hermaphrodite with obvious eggs, 1 = hermaphrodite carrying no visible eggs, 2 = looks like a hermaphrodite gonad, but abnormal with no eggs (categories 1 & 2 were pooled together for analyses in the publication), 3 = male.
DOI: 10.5061/dryad.331sq/2
title: Table 1

description: Location, site abbreviation (Abbr), sample year, sample size (n), and life stage (A = adult, J = juvenile) of fish sampled from 32 putative coho salmon populations in seven regions of Alaska.
DOI: 10.5061/dryad.87v26/1
title: Growth Rates
DOI: 10.5061/dryad.87v26/2
title: Larval Development Rates
DOI: 10.5061/dryad.87v26/3
title: Egg Development Rates
DOI: 10.5061/dryad.m2d33/1
title: Basson et al data

description: Survival, fecundity and metabolic rate data for two treatment groups (hardened and control).
DOI: 10.5517/ccdc.csd.cc1zwwlb
title: CCDC 1844053: Experimental Crystal Structure Determination

description: Related Article: Feng Jiang, Xinping Feng, Rou Wang, Xing Gao, Hao Jia, Yumei Xiao, Cheng Zhang, Hongchao Guo|2018|Org.Lett.|20|5278|doi:10.1021/acs.orglett.8b02214
DOI: 10.5061/dryad.1d24c/1
title: 21 species means

description: Mean values for the 16 morphological traits for the 21 Anolis species.
DOI: 10.5061/dryad.1d24c/2
title: P (correlation matrices)

description: Phenotypic correlation matrices for 18 morphological traits for the 8 Anolis species and pooled P.
DOI: 10.5061/dryad.1d24c/3
title: P (covariance matrices)

description: Phenotypic covariance matrices for 18 morphological traits for the 8 Anolis species and pooled P.
DOI: 10.5061/dryad.0mq34/1
title: Nahal_Oren_D_simulans
DOI: 10.5061/dryad.9097/3
title: Stocks_etal_2008_Biotropica_Data
DOI: 10.5061/dryad.919fn/1
title: female thorax size

description: Each line in this file correspond to the thorax size for one female. In addition to her size there is information about the (i)block, (ii) population, (iii) selection regime, and (iv) yeast level.
DOI: 10.5061/dryad.5t689/1
title: Kappeler_Fichtel

description: The file contains demographic data on Eulemur rufifrons collected in Kirindy forest, Madagascar.
DOI: 10.5061/dryad.850pr/1
title: identified mates, spatial locations, microsatellite and mitochondrial data, candidate parents for parentage analysis
DOI: 10.5061/dryad.853nh/1
title: Data SH4 Dryad data sharing

description: Data file of the experiment 'SH4'. Samples are from mice infected with a resistant Plasmodium chabaudi clone in the absence of competition and with various combinations of up to three susceptible clones. Daily samples were taken on red blood cell density, weight, asexual parasite density of each clone (by qPCR) and gametocyte density of clone R (by qPCR). The description of the column headings are all given as comments in the excel file.
DOI: 10.5061/dryad.cb506/1
title: KJBrecursions

description: Multilocus recursions. This file needs to be placed in the current working directory in order to initialize the Mathematica supplement properly.
DOI: 10.5061/dryad.1nn7v/1
title: Figure 1 and Table 4 71811
DOI: 10.5061/dryad.2d1b8/1
title: Aphis_fabae_microsatellite_and_sampling_data

description: Sampling details (locations, dates and host plants) of 655 European Aphis fabae specimens and the corresponding data for eight microsatellite loci.
DOI: 10.5061/dryad.491d1/2
title: Role of inhaled hypertonic saline in cystic fibrosis - Appendix
DOI: 10.5061/dryad.6360s/1
title: Dryad Evo 11-0373

description: Excel spreadsheet of observational data imported from JWatcher. Separate tabs for 'consensual' and 'coercive' mating attempts.
DOI: 10.5061/dryad.6mj22/1
title: DRYAD_DATA_UPLOAD

description: Raw lineage data for both glucose and lactose experiments used in Figure 3. README file is supplied within the .zip archive.
DOI: 10.5061/dryad.gv1t0/1
title: Bezault_LVRS-AFLP_EVOL-10-0838

description: Matrix of AFLP Genotypes.Individuals by lines and loci genotype (presence/absence) in column.