cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/fs7w7jb8mr
title: PhasicFlow: A parallel, multi-architecture open-source code for DEM simulations

description: PhasicFlow is an open-source code for DEM simulations developed in C++, licensed under GPL V-3.0 [www.github.com/PhasicFlow/phasicFlow]. It is parallelized based on shared-memory model and can be executed on multi-core CPUs or GPUs. The philosophy of its development is to provide an efficient, easy-to-use, and easy-to-extend tool for a wide range of hardware including cheap to high-end desktop computers. Here, the code structure, the most important features, its performance for simulating small to large problems (250,000 to 80,000,000 particles) on various hardware are presented. In all cases, the execution time varied linearly with number of particles that is ideal for DEM. The computation load per particle was almost constant for all problem sizes except for small simulations (higher). For CPU simulations, a good scaling was observed with number of cores, and scaling was closer to ideal state for larger simulations. The performance of PhasicFlow was compared with similar tools, wherever possible. It was shown that the performance of PhasicFlow is much higher than the similar tools in CPU execution mode and it is around 10–15% faster than similar tools in GPU execution mode. This new tool broadens the application of computer simulation to larger problems and allows researchers to perform DEM simulations on a wider range of hardware.
DOI: 10.6084/m9.figshare.11609280.v1
title: The neurology behind three wounded French artists during the great world war

description: Abstract A unique association joins Guillaume Apollinaire, Blaise Cendrars and Louis Ferdinand Céline. Besides being great exponents of French literature, they were all neurologically wounded during the First World War. Apollinaire had a traumatic brain injury, Cendrars developed phantom limb neuropathic pain and Céline presented radial nerve paralysis. There is quite an evidence that supports that their artistic output was also influenced by acquired neurological conditions during the war. The examples of these three French authors reveal the surprising intimacy Neurology can share with art and history.
DOI: 10.6084/m9.figshare.25911817.v1
title: Global nitrate concentrations and exceedance probability prediction map (GeoTIFF rasters)

description: #1. Forecast atlas of nitrate concentrations in global groundwater. The map was developed by applying all selected integrated machine-learning models to the 15 variables that exhibited the most statistically significant predictive power. Concentration prediction maps provide precise locations and specific concentrations of groundwater nitrates, effectively capturing high-value areas observed in field measurements. However, they do not represent the absolute true values of the aquifer onsite. Aligned with the objectives of exceedance probability map sets, the focus lies in identifying regions where elevated nitrate levels may exist, especially in heterogeneous aquifers where field investigations are challenging or impossible, thereby estimating the impact on the potentially affected population. Notably, high-value areas are widespread in African regions, despite limited modeling data, extensive research supports the distribution of elevated nitrate concentrations in Africa. However, predictions of nitrate concentrations in spatially contiguous desert zones in northern Africa were not considered. This decision was made after analyzing a combination of measured data (training data), land use type, and population distribution. #2. Probability of exceeding the WHO drinking water standard (50 mg/L) for nitrates in groundwater. The map of nitrate exceedance probabilities was created by applying the final integrated machine-learning model to 45 natural and anthropogenic-dominated predictor variables.
DOI: 10.6084/m9.figshare.3563562.v1
title: Appendix E. Extended results.

description: Extended results.
DOI: 10.17632/dm227xmgx2
title: Fundamental Period of Steel Braced RC Structures

description: This dataset comprises 17,280 unique building models, with each model characterized by different building parameters and corresponding eigenvalue modal analysis results for both Concentrically Braced Frames (CBFs) and Eccentrically Braced Frames (EBFs). Building parameters taken into consideration include, but are not limited to, the type and installation position of bracing, the number of storeys, the dimensions of bays in X and Y directions, the depth of the beam, the width of the column, the type of bracing, and the properties of the materials used.

Additionally, the data is presented in a tabular CSV format, which allows for easy access and manipulation of the data. Each row in the CSV file represents a unique building model, with the corresponding parameters and fundamental vibrational period specified in the columns. This format facilitates easy navigation, understanding, and application of the data.

In conclusion, this dataset serves as an extensive tool for future research in structural engineering, particularly in the area of seismic behaviour. It paves the way for a more nuanced understanding of steel-braced reinforced concrete structures and aids in the development of sophisticated predictive models. Its significant potential for reuse in diverse contexts, from refining design methodologies to developing machine learning models, underlines its broader value to the academic and professional community.
DOI: 10.6084/m9.figshare.10006610.v1
title: The many dimensions of phytochemical diversity: linking theory to practice

description: Data from Wetzel, W.C., and S.R. Whitehead. The many dimensions of phytochemical diversity: linking theory to practice. Ecology Letters. 10.1111/ELE.13422<br>Physalis_dilution_study.csv relates toAppendix S1. Part IV. The relationship between sample concentration and detected compound richness.<br>Physalis_diversity_abundance_relationship.csv relates toAppendix S1. Part V. Exploration of diversity–abundance relationship in ​<i>Physalis angulata</i>.<br>Metadata with variable descriptions are contained inWetzel and Whitehead metadata.txt.
DOI: 10.6084/m9.figshare.19657671.v1
title: Leveraging on Digital Technology for Financial Inclusion of Women Agripreneurs in Southern Nigeria.

description: These data sets contain information on conditions for accessing digital financial products and services (DFS). Participation and Perception of Women Agripreneurs on Micro-insurance. Income, Savings and Assets of Women Agripreneurs who access DFS and those who do not access DFS in Southern Nigeria.
DOI: 10.6084/m9.figshare.22643119.v1
title: Data set of Technology implication in MSME

description: The data set is used in the research on the topic <strong>Technology implication in Sustainable MSMEs: The case of Machinery manufacturing MSMEs in India</strong>
DOI: 10.6084/m9.figshare.9686648.v2
title: Bias Corrected daily most expected and extreme CORDEX precipitation data set for India

description: This data set contains Bias Corrected CORDEX precipitation simulation over India. The selected bias correction methodology 'copula based bias correction scheme' as proposed by Maity et al., 2017, which is found to reduce bias in most expected daily precipitation and extreme precipitation effectively. Hence, the data set is apt for hydrological extreme modeling throughout India under different climatic scenarios.<br>
DOI: 10.6084/m9.figshare.9974357.v2
title: Distributed coding of choice, action, and engagement across the mouse brain

description: Data from "Distributed coding of choice, action, and engagement across the mouse brain" by Nicholas A. Steinmetz, Peter Zatka-Haas, Matteo Carandini, Kenneth D. Harris, Nature 2019. https://doi.org/10.1038/s41586-019-1787-x<br><b>ONE interface</b><br><br>The data is available via the ONE interface. Installation instructions: https://github.com/int-brain-lab/ibllib/tree/master/oneibl#one-light <br><br>Notes about the data format : https://github.com/nsteinme/steinmetz-et-al-2019/wiki/data-files<br>To search and download this dataset:<br>import onelight as one<br>sessions = one.search(['trials']) # search for all sessions that have a `trials` object<br>session = sessions[0] # take the first session<br>trials = one.load_object(session, 'trials') # load the trials object<br>print(trials.intervals) # trials is a Bunch, values are NumPy arrays or pandas DataFrames<br>print(trials.goCue_times)<br><br><br>
DOI: 10.6084/m9.figshare.1213107.v3
title: An Experimental Study on the Effectiveness of Disclosing Stressful Life Events and Support Messages: When Cognitive Reappraisal Support Decreases Emotional Distress, and Emotional Support Is Like Saying Nothing At All - Syntax Manuscript PLOS ONE

description: Syntax that belongs to Manuscript PLOS ONE [currently accepted for publication] (dataset available at DOI 10.6084/m9.figshare.1213106) Manuscript title: An Experimental Study on the Effectiveness of Disclosing Stressful Life Events and Support Messages: When Cognitive Reappraisal Support Decreases Emotional Distress, and Emotional Support Is Like Saying Nothing At All Authors: Anika Batenburg & Enny Das
DOI: 10.6084/m9.figshare.12648896.v1
title: Inter-annual Variability of the Mid-Atlantic Bight Cold Pool

description: The original ROMS model dataset of three-dimensional temperature over the Mid-Atlantic Bight continental shelf for Cold Pool quantification from 1958 to 2007. Horizontal resolution of the model grid is about 7 km and there are 40 vertical terrain-following levels. The model output are archived at a daily interval.
DOI: 10.6084/m9.figshare.18152690.v2
title: A study of students satisfaction in asynchronous online learning ... دراسة رضا الطلاب عن التعلم غير المتزامن عبر الإنترنت.xlsx

description: This study was N=564 students enrolled in asynchronous online course at College of Sharia Sciences in the Sultanate of Oman for the acdemic year 2020-2021
DOI: 10.6084/m9.figshare.2072890.v1
title: Transcriptomic Analysis of Staphylococcal sRNAs: Insights ino Species Specific Adaption and the Evolution of Pathogeness

description: Next-generation sequencing technologies have dramatically increased the rate at which new genomes are sequenced. Accordingly, automated-annotation programs have become adept at identifying and annotating protein coding regions, as well as common and conserved RNAs. Additionally, RNAseq techniques have advanced our ability to identify and annotate regulatory RNAs (sRNAs), which remain significantly understudied. Recently, our group catalogued and annotated all previously known and newly identified sRNAs in several <i>Staphylococcus aureus </i>strains. These complete annotation files now serve as tools to compare the sRNA content of <i>S. aureus to</i> other bacterial strains to investigate the conservation of their sRNomes. Accordingly, in this study we performed RNAseq on two staphylococcal species, <i>S. epidermidis </i>and <i>S. carnosus,</i> identifying 118 and 89 sRNAs in these organisms, respectively. The sRNA content of all three species were then compared to elucidate their common and species-specific sRNA content, identifying a core set between 53 and 36 sRNAs encoded in each organism. In addition, we determined that <i>S. aureus has</i> the largest set of unique sRNAs (137) while <i>S. epidermidis has</i> the fewest (25). Finally, we identify a highly conserved sequence and structural motif differentially represented within, yet common to, both <i>S. aureus </i>and <i>S. epidermidis. </i>Collectively, in this study, we uncover the sRNome common to three staphylococcal species, shedding light on sRNAs that are likely to be involved in basic physiological processes common to the genus. More significantly, we have identified species-specific sRNAs that are likely to influence the individual lifestyle and behavior of these diverse staphylococcal strains.
DOI: 10.6084/m9.figshare.26299039.v2
title: Phenotypical and biometrical characterisation of creole goats in north-eastern Mexico

description: Creole goats are a valuable genetic resource in Mexico by their adaptability and economic value. This study aimed at describing the phenotypical and biometrical characteristics of creole goats on the Tamaulipas Plateau (TP) and in the San Fernando Valley (SFV) districts in north-eastern Mexico
DOI: 10.6084/m9.figshare.28770803.v1
title: S1: A day at the beach: a portrait of British geology through sand

description: Appendix 1 Zircon U-Pb Data
DOI: 10.17632/4b8vhb45z2
title: MN183-3 detailed chronology

description: The sampling point is located on the slope of the NW Black Sea continental platform at the exact location described by 43.925.917 N, 30.758.911 E and at a water depth of 658 m in the anoxic/euxinic environment, which starts below the surface at around 150 m depth. 
Here, we publish the final data of our case study as an intermediate product, which set the base and come in handy for creating a high-resolution sedimentation model spanning the last 5500 years. The AMS radiocarbon dated material is the bulk organic matter. 
We present the series of 25 radiocarbon ages on the sampled layers of organic matter, each two centimeters. The  radiocarbon raw data files (.dat files) work with BATS 4.06 data reduction software. The final output file is written for web browser visualisation (.xhtml files). There are three data files for each of the AMS measurements performed on 1.10.2020, 19.03.2021 and  24.03.2021.
For the identification of the reservoir sources of the organic matter in sediments we've resorted to measure the δ13C  (#12 samples) and C/N atomic ratio (files:  "Experimental_data_13C.xlxs" and "Experimental_data_C-N.xlxs"; the raw data for the 13C measurements is found in "raw_exp_data_13C.pdf"). 
The XRF files are compatible with Bruker Instrument Tools 1.6.0.110 software (.pdz files). These results are also transcripted in MS Excel files. 
We attach also the TOC measurement taken on all the 25 depths (Experimental_data_TOC.xlxs") and the radioactivity levels for 210Pb and 137Cs found in "Experimental_data_210Pb-137Cs.xlxs".
DOI: 10.6084/m9.figshare.11933097.v1
title: cds

description: The ability of climbing plants to grow upward along others to reach the canopy for photosynthesis is hypothesized as a key innovation in flowering plants. Most members of the Cucurbitaceae, a family containing $1000 species and many important crops, are climbers and have characteristic tendrils and pepo fruits. Here, we present 127 newly sequenced transcriptomes and genomes along with other datasets for a total of 136 cucurbits representing all tribes to establish a robust Cucurbitaceae phylogeny containing eight highly resolved major clades. We analyzed whole-genome duplication, diversification dynamics, and ancestral morphologies, and found that after early genome duplication event(s), a burst of diversification and morphological innovations in flower, fruit, and root characters occurred under the climate optimum in the Early Eocene. Species radiation during the Mid-Eocene Climatic Optimum also coincided with several morphological changes shared by 80% of cucurbits. We found that the cucurbit-specific tendril identity gene TEN originated from a paleo-polyploidization event at the origin of the family. Our results support the hypothesis that cucurbit diversifications were probably driven by increased genetic diversity following polyploidizations and by trait morphological innovations under paleo-climate upheavals. Our study provides a phylogenetic framework and new insights into morphological and genomic changes underlying the adaptive evolution of Cucurbitaceae.
DOI: 10.6084/m9.figshare.12962378.v4
title: 100% homology sequences of Betacoronaviruses S protein and S1 subunit.

description: 100% homology sequences of S protein and S1 subunit of Betacoronaviruses are available from GenBank (https://www.ncbi.nlm.nih.gov/protein/) before April 2020, used in phylogenetic analysis. The following abbreviations are applied: WatbuCoV – Waterbuck coronavirus, GirCoV – Giraffe coronavirus, SamdeCoV – Sambar deer coronavirus, YakCoV – Yak coronavirus, BetaCoV – Betacoronavirus, MuCoV – Murine coronavirus, TylBatCoV – Tylonycteris bat coronavirus, RouBatCoV – Rousettus bat coronavirus, BatSARS-CoV – Bat SARS coronavirus, BatSARSL-CoV – Bat SARS-like coronavirus; and Hs – Homo sapiens, Pagla – Paguma larvata, Cd – Camelus dromedarius, Camdr – Camelus dromedarius, Bt – Bos taurus, Bubbu – Bubalus bubalis, Bg – Bos grunniens, Ptv – Pan troglodytes verus, Erieu – Erinaceus europaeus, Eriam – Erinaceus amurensis, Sussc – Sus scrofa, Equca – Equus caballus, Orycu – Oryctolagus cuniculus, Ratno – Rattus norvegicus, Mm – Mus musculus, Pipcfhe – Pipistrellus cf. hesperidus, Roule – Rousettus leschenaulti, Rhisi – Rhinolophus sinicus, Rhibl – Rhinolophus blasii, lhc – the lab host cells, lhm – the lab host mouse. Stars designate protein sequences deduced from nucleotide sequences using the GeneRunner program. Underlined sequences have been used in the construction of the phylogenetic tree. The numbers in front of sequence annotation are the unique sequence numbers for each S/S1 sequence in the batch for each BetaCoV species for more comfortable use.
DOI: 10.6084/m9.figshare.15079221.v1
title: Dataset.xlsx

description: Inter-tester, intra-day data was collected 90 minutes apart, while intra-tester, inter-week data were collected on the same day and time, one week apart. Three maximal voluntary isometric strength tests were completed as ‘make’ tests. Maximal force was exerted against a dynamometer by players, over a five second period. Standardised unilateral knee flexion, hip adduction and abduction strength were tested on all participating players. All testing protocols incorporated the use of an externally fixed and calibrated load cell secured to a level floor, a height-adjustable electronic examination table, an adjustable chain and adjustable ankle straps. The protocol undertaken for testing of knee flexion is in accordance with previously published research (Wollin, Purdam, & Drew, 2016). Both hip strength testing positions are in accordance with previously published research (Thorborg et al., 2010).<br>
DOI: 10.6084/m9.figshare.24547276.v2
title: <b>Evaluation of accuracy and potential harm of ChatGPT in medical nutrition therapy - a case-based approach</b>

description: Data is collected through ChatGPT for different scenarios. Accuracy and potential to harm the information were tested using the input of a dietician and expert group respectively. The method of selection of respondents was nonprobability purposive sampling while the consensus was built using the Delphi method in case more than one decision maker were involved.
DOI: 10.6084/m9.figshare.24849318.v2
title: <b>关联</b><b> 母亲</b><b>铜</b><b>/锌摄入量与</b><b>preterm birth</b>

description: <b>关联</b><b> 母亲</b><b>铜</b><b>/锌摄入量与</b><b>preterm birth</b>
DOI: 10.6084/m9.figshare.27904791.v2
title: The structural basis of protective and nonprotective human monoclonal antibodies targeting the parainfluenza virus type 3 hemagglutinin-neuraminidase

description: Figure 2. Fusion inhibition of mAbs from each site was assessed by transfecting Vero-SLAM cells with either HN or F and GFP 3 hrs prior to adding mAb. Syncytia formation was visualized 24 hours following transfection and fusion inhibition was evaluated by comparison to the PBS-treated control. Previously identified anti-F mAb PIA174 was used as a positive control.<br>Figure S4. Raw Size exclusion chromatography data for the curves in Figure S4. PIV3 HN eluted at approximately 14-15 mL on the Superdex S200, 10/300 column. PIV3HN-05 Fab eluted at approximately 15 mL on the Superdex S200, 10/300 column. PIV3 HN complexed with PIV3HN-13 Fab eluted at approximately 12 mL, and excess Fab eluted at approximately 15 mL on the Superdex S200, 16/600 column. (D) PIV3 HN complexed with PIV3HN-05 Fab and PIV3HN-13 Fab eluted at approximately 11 mL, and excess Fab eluted at approximately 15 mL. PIV3 infected cells mAb staining. Raw flow cytometry data from Figure 1D. PIV3-infected LLC-MK2 cells were stained with anti-PIV3 HN mAbs PIV3HN-05 and PIV3HN-09 conjugated to PE. Anti-F mAb PIA174 was used as a positive control, and a mAb against human metapneumovirus, MPV467, was used as a negative control. Both anti-HN mAbs and anti-F mAbs were detected on virally infected cells. Data in the manuscript was analyzed in FlowJo.<br><br>
DOI: 10.6084/m9.figshare.3562719.v1
title: Appendix B. Fine root tissue density in surface soils for 0–1 mm roots and 1–2 mm roots without or with the addition of K, without or with the addition of N and P, and without or with the addition of NPK.

description: Fine root tissue density in surface soils for 0–1 mm roots and 1–2 mm roots without or with the addition of K, without or with the addition of N and P, and without or with the addition of NPK.
DOI: 10.48420/29074760.v1
title: Appendix Worksheets: Multi-Omics Analysis of Tissue Taphonomy for Forensics and Bioarchaeological Applications

description: Excel Workbook Containing Appendix Worksheets for PhD Thesis:<br><b><i>Appendix Sheets 3.1: Recovery of Decomposed Pig Leg Metabolite Peak IDs using MultiQuant and MS-DIAL software</i></b>Metabolites were extracted from both skin and muscle layers of a pig leg over seven timepoints, from initial zero hour (0HR) to of a 42 days (42D), and ran on a SCIEX 6600 TripleTOF Q-TOF mass spectrometer. Data acquired using SWATH-DIA were processed using both commercial (SCIEX’s MulitQuant 3.0.2, ins. ref ) and open-source (MS-DIAL 4.9) software. Peaks from MS1 and MS2 were matched against a metabolite library of 235 standards in MultiQuant and scored using a custom VBA macro (a). MS2 (b) and MS1 (c) peaks were processed independently after MS-DIAL, with sorting and filtering based on identification scores. In all cases, green results show a high confidence of identification, yellow a lower confidence and red indicates missing IDs.<b><i>Appendix Sheets 3.2: Unique Compounds Recovered from Decomposed Pig Leg Lipids identified through Progenesis software from Mass Spectrometry ran in Positive (a) and Negative Mode (b)</i></b><b><i>Appendix Sheet 4.1 Observations during Modelling and Extraction of Decomposing Porcine Leg Skeletal Muscle (MU) and Skin (SK) </i></b><b><i>Appendix Sheet 4.2 Protein Mass Spectrometry Sample Digestion and Manifest </i></b><b><i>Appendix Sheet 4.3 DNA Purification</i></b><br><br>