cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10698879
title: DLPFC12

description: DLPFC dataset for ST studies
DOI: 10.5281/zenodo.10698880
title: DLPFC12

description: DLPFC dataset for ST studies
DOI: 10.6084/m9.figshare.11430720
title: MOESM4 of Mepiquat chloride promotes cotton lateral root formation by modulating plant hormone homeostasis

description: Additional file 4: Table S4. The list of ABA-, GA-, and ethylene-related differentially expressed genes
DOI: 10.6084/m9.figshare.11430720.v1
title: MOESM4 of Mepiquat chloride promotes cotton lateral root formation by modulating plant hormone homeostasis

description: Additional file 4: Table S4. The list of ABA-, GA-, and ethylene-related differentially expressed genes
DOI: 10.5281/zenodo.10698902
title: Human Breast Cancer Block A

description: Human Breast Cancer Block A dataset for ST studies
DOI: 10.5281/zenodo.10698903
title: Human Breast Cancer Block A

description: Human Breast Cancer Block A dataset for ST studies
DOI: 10.5281/zenodo.10698908
title: Mouse Hypothalamus

description: Mouse Hypothalamus dataset for ST studies
DOI: 10.5281/zenodo.10698909
title: Mouse Hypothalamus

description: Mouse Hypothalamus dataset for ST studies
DOI: 10.5281/zenodo.10698911
title: Mouse Visual Cortex

description: Mouse Visual Cortex dataset for ST studies
DOI: 10.5281/zenodo.10698912
title: Mouse Visual Cortex

description: Mouse Visual Cortex dataset for ST studies
DOI: 10.6084/m9.figshare.13003587
title: Age-related DNA methylation in paired normal and tumour breast tissue in Chinese breast cancer patients

description: Age-related DNA methylation is a potential mechanism contributing to breast cancer development. Studies of primarily Caucasian women have identified many CpG sites of age-related methylation in non-diseased breast tissue possibly driving cancer development over time. There is a paucity of studies involving Asian women whose ages at breast cancer onset are usually younger than Caucasians. We identified the 181 most consistent age-related methylation events in non-diseased breast tissue across published studies. Age-related methylation events were measured in adjacent normal and breast tumour tissue in an exclusively Asian population at the previously identified age-related methylation sites. Age-related methylation was found in 118 probes in adjacent normal breast tissue. Methylation of 99% of these sites was increased with age and predominantly located on CpG islands in promoter regions. To ascertain biological relevance to breast cancer, we focused on the 37 sites with overall higher methylation in tumour compared to adjacent normal samples. Some sites positively related to age, including <i>AQP5</i> and <i>CORO6</i>, inversely correlated with gene expression. Several others have known involvement in suppression of carcinogenesis including <i>GPC5</i> and <i>SST</i>, suggesting that perturbation of epigenetic regulation at these sites due to ageing may contribute to the progression of carcinogenesis. This study highlights an age-related methylation landscape in non-tumour tissue, consistent not just across studies, but also across different populations. We present candidate age-related methylation sites warranting further investigation as potential epigenetic drivers of breast cancer. They may serve as potential targets of site-specific demethylation intervention strategies for the prevention of age-related breast cancer.
DOI: 10.6084/m9.figshare.13003587.v1
title: Age-related DNA methylation in paired normal and tumour breast tissue in Chinese breast cancer patients

description: Age-related DNA methylation is a potential mechanism contributing to breast cancer development. Studies of primarily Caucasian women have identified many CpG sites of age-related methylation in non-diseased breast tissue possibly driving cancer development over time. There is a paucity of studies involving Asian women whose ages at breast cancer onset are usually younger than Caucasians. We identified the 181 most consistent age-related methylation events in non-diseased breast tissue across published studies. Age-related methylation events were measured in adjacent normal and breast tumour tissue in an exclusively Asian population at the previously identified age-related methylation sites. Age-related methylation was found in 118 probes in adjacent normal breast tissue. Methylation of 99% of these sites was increased with age and predominantly located on CpG islands in promoter regions. To ascertain biological relevance to breast cancer, we focused on the 37 sites with overall higher methylation in tumour compared to adjacent normal samples. Some sites positively related to age, including <i>AQP5</i> and <i>CORO6</i>, inversely correlated with gene expression. Several others have known involvement in suppression of carcinogenesis including <i>GPC5</i> and <i>SST</i>, suggesting that perturbation of epigenetic regulation at these sites due to ageing may contribute to the progression of carcinogenesis. This study highlights an age-related methylation landscape in non-tumour tissue, consistent not just across studies, but also across different populations. We present candidate age-related methylation sites warranting further investigation as potential epigenetic drivers of breast cancer. They may serve as potential targets of site-specific demethylation intervention strategies for the prevention of age-related breast cancer.
DOI: 10.6084/m9.figshare.11430726
title: MOESM5 of Mepiquat chloride promotes cotton lateral root formation by modulating plant hormone homeostasis

description: Additional file 5: Table S5. The primers for each reference gene for qRT-PCR analysis.
DOI: 10.6084/m9.figshare.11430726.v1
title: MOESM5 of Mepiquat chloride promotes cotton lateral root formation by modulating plant hormone homeostasis

description: Additional file 5: Table S5. The primers for each reference gene for qRT-PCR analysis.
DOI: 10.5281/zenodo.10698913
title: Mouse Prefrontal Cortex

description: Mouse Prefrontal Cortex dataset for ST studies
DOI: 10.5281/zenodo.10698914
title: Mouse Prefrontal Cortex

description: Mouse Prefrontal Cortex dataset for ST studies
DOI: 10.5281/zenodo.10698930
title: Mouse Brain Section 2 Sagittal Anterior and Posterior

description: Mouse Brain Section 2 Sagittal Anterior and Posterior dataset for ST studies
DOI: 10.5281/zenodo.10698931
title: Mouse Brain Section 2 Sagittal Anterior and Posterior

description: Mouse Brain Section 2 Sagittal Anterior and Posterior dataset for ST studies
DOI: 10.5517/ccdc.csd.cc2d03xg
title: CCDC 2204655: Experimental Crystal Structure Determination

description: Related Article: Phonlakrit Muang-Non, Christopher Richardson, Nicholas G. White|2023|Angew.Chem.,Int.Ed.|62|e202212962|doi:10.1002/anie.202212962
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d03yh
title: CCDC 2204656: Experimental Crystal Structure Determination

description: Related Article: Phonlakrit Muang-Non, Christopher Richardson, Nicholas G. White|2023|Angew.Chem.,Int.Ed.|62|e202212962|doi:10.1002/anie.202212962
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d03zj
title: CCDC 2204657: Experimental Crystal Structure Determination

description: Related Article: Phonlakrit Muang-Non, Christopher Richardson, Nicholas G. White|2023|Angew.Chem.,Int.Ed.|62|e202212962|doi:10.1002/anie.202212962
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d040l
title: CCDC 2204658: Experimental Crystal Structure Determination

description: Related Article: Phonlakrit Muang-Non, Christopher Richardson, Nicholas G. White|2023|Angew.Chem.,Int.Ed.|62|e202212962|doi:10.1002/anie.202212962
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gftsj
title: CCDC 2277408: Experimental Crystal Structure Determination

description: Related Article: Tiantian Cao, Qingyu Meng, Ze Fu, Yi Shen, Yingjing Yan, Qin Wang, Bing Zhao, Wenxia Wang, Khaoula Merimi, Antonio Rodríguez-Fortea, Yang-Rong Yao, Ning Chen|2023|Inorg.Chem.Front.|10|6901|doi:10.1039/D3QI01215H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gfttk
title: CCDC 2277409: Experimental Crystal Structure Determination

description: Related Article: Tiantian Cao, Qingyu Meng, Ze Fu, Yi Shen, Yingjing Yan, Qin Wang, Bing Zhao, Wenxia Wang, Khaoula Merimi, Antonio Rodríguez-Fortea, Yang-Rong Yao, Ning Chen|2023|Inorg.Chem.Front.|10|6901|doi:10.1039/D3QI01215H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10698946
title: HER2 Positive Breast Tumors

description: HER2 Positive Breast Tumors dataset for ST studies
DOI: 10.5281/zenodo.10698947
title: HER2 Positive Breast Tumors

description: HER2 Positive Breast Tumors dataset for ST studies
DOI: 10.6084/m9.figshare.21916540.v1
title: Kernel Estimation of Bivariate Time-varying Coefficient Model for Longitudinal Data with Terminal Event

description: We propose a nonparametric bivariate time-varying coefficient model for longitudinal measurements with the occurrence of a terminal event that is subject to right censoring. The time-varying coefficients capture the longitudinal trajectories of covariate effects along with both the followup time and the residual lifetime. The proposed model extends the parametric conditional approach given terminal event time in recent literature, and thus avoids potential model misspecification. We consider a kernel smoothing method for estimating regression coefficients in our model and use cross-validation for bandwidth selection, applying undersmoothing in the final analysis to eliminate the asymptotic bias of the kernel estimator. We show that the kernel estimates follow a finite-dimensional normal distribution asymptotically under mild regularity conditions, and provide an easily computed sandwich covariance matrix estimator. We conduct extensive simulations that show desirable performance of the proposed approach, and apply the method to analyzing the medical cost data for patients with end-stage renal disease.
DOI: 10.5281/zenodo.10698959
title: Mouse Hippocampus

description: Mouse Hippocampus dataset for ST studies
DOI: 10.5281/zenodo.10698960
title: Mouse Hippocampus

description: Mouse Hippocampus dataset for ST studies
DOI: 10.5281/zenodo.10637531
title: Data from: Early-life silver spoon improves survival and breeding performance of adult zebra finches

description: Data corresponds to: Wilson1 KM and NT Burley2. (2024). Early-life silver spoon improves survival and breeding performance of adult zebra finches. American Naturalist. 

 

1Department of Biology, Pomona College, Claremont, CA, USA. keri.wilson@pomona.edu

2Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, CA, USA. ntburley@uci.edu 

 

Developmental plasticity allows organisms to increase the fit between their phenotype and their early-life environment. The extent to which such plasticity also enhances adult fitness is not well understood, however, particularly when early-life and adult environments differ substantially.  Using a cross-factorial design that manipulated diet at two life stages, we examined predictions of major hypotheses – silver spoon, environmental matching, thrifty phenotype – concerning the joint impacts of early-life and adult diets on adult morphology/display traits, survival, and reproductive allocation. Overall, results aligned with the silver spoon hypothesis, which makes several predictions based on the premise that development in poor-quality environments constrains adult performance. Males reared and bred on the low-protein diet had lower adult survivorship than other male treatment groups; females’ survivorship was higher than males’ and not impacted by early diet. Measures of allocation to reproduction primarily reflected breeding diet, but where natal diet impacted reproduction, results supported the silver spoon. Both sexes showed reduced expression of display traits when reared on a low-protein diet. Results accord with other studies in supporting the relevance of the silver spoon hypothesis to birds and point to significant ramifications of sex differences in early-life viability selection on the applicability/strength of silver spoon effects.

 

Both authors were responsible for data collection and code writing.
DOI: 10.5281/zenodo.10637532
title: Data from: Early-life silver spoon improves survival and breeding performance of adult zebra finches

description: Data corresponds to: Wilson1 KM and NT Burley2. (2024). Early-life silver spoon improves survival and breeding performance of adult zebra finches. American Naturalist. 

 

1Department of Biology, Pomona College, Claremont, CA, USA. keri.wilson@pomona.edu

2Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, CA, USA. ntburley@uci.edu 

 

Developmental plasticity allows organisms to increase the fit between their phenotype and their early-life environment. The extent to which such plasticity also enhances adult fitness is not well understood, however, particularly when early-life and adult environments differ substantially.  Using a cross-factorial design that manipulated diet at two life stages, we examined predictions of major hypotheses – silver spoon, environmental matching, thrifty phenotype – concerning the joint impacts of early-life and adult diets on adult morphology/display traits, survival, and reproductive allocation. Overall, results aligned with the silver spoon hypothesis, which makes several predictions based on the premise that development in poor-quality environments constrains adult performance. Males reared and bred on the low-protein diet had lower adult survivorship than other male treatment groups; females’ survivorship was higher than males’ and not impacted by early diet. Measures of allocation to reproduction primarily reflected breeding diet, but where natal diet impacted reproduction, results supported the silver spoon. Both sexes showed reduced expression of display traits when reared on a low-protein diet. Results accord with other studies in supporting the relevance of the silver spoon hypothesis to birds and point to significant ramifications of sex differences in early-life viability selection on the applicability/strength of silver spoon effects.

 

Both authors were responsible for data collection and code writing.
DOI: 10.5281/zenodo.10698962
title: MOSTA Embryo

description: MOSTA Embryo dataset for ST studies
DOI: 10.5281/zenodo.10698963
title: MOSTA Embryo

description: MOSTA Embryo dataset for ST studies
DOI: 10.5281/zenodo.7535227
title: VaxxHesitancy: A Dataset for Studying Hesitancy Towards COVID-19 Vaccination on Twitter

description: We create a publicly available dataset of over 3,100 COVID-19 vaccine-related tweets labeled as one of four stance categories: pro-vaxx, anti-vaxx, vaxx-hesitant, or irrelevant.

***

Please use the V2 version.

***

We split our dataset into two separate files:

(1) VaccineHesitancy_train_v2.csv (Single + Double annotated)

(2) VaccineHesitancy_test.csv (Double annotated)

We present the details of this dataset here:

VaxxHesitancy: A Dataset for Studying Hesitancy Towards COVID-19 Vaccination on Twitter (ICWSM 2023)

Our Pre-trained model (GateNLP/covid-vaccine-twitter-bert) : https://huggingface.co/GateNLP/covid-vaccine-twitter-bert

Paper: https://ojs.aaai.org/index.php/ICWSM/article/view/22213/21992

 

@inproceedings{mu2023vaxxhesitancy,
  title={VaxxHesitancy: A Dataset for Studying Hesitancy Towards COVID-19 Vaccination on Twitter},
  author={Mu, Yida and Jin, Mali and Grimshaw, Charlie and Scarton, Carolina and Bontcheva, Kalina and Song, Xingyi},
  booktitle={Proceedings of the International AAAI Conference on Web and Social Media},
  volume={17},
  pages={1052--1062},
  year={2023}
}
DOI: 10.5281/zenodo.7601328
title: VaxxHesitancy: A Dataset for Studying Hesitancy Towards COVID-19 Vaccination on Twitter

description: We create a publicly available dataset of over 3,100 COVID-19 vaccine-related tweets labeled as one of four stance categories: pro-vaxx, anti-vaxx, vaxx-hesitant, or irrelevant.

***

Please use the V2 version.

***

We split our dataset into two separate files:

(1) VaccineHesitancy_train_v2.csv (Single + Double annotated)

(2) VaccineHesitancy_test.csv (Double annotated)

We present the details of this dataset here:

VaxxHesitancy: A Dataset for Studying Hesitancy Towards COVID-19 Vaccination on Twitter (ICWSM 2023)

Our Pre-trained model (GateNLP/covid-vaccine-twitter-bert) : https://huggingface.co/GateNLP/covid-vaccine-twitter-bert

Paper: https://ojs.aaai.org/index.php/ICWSM/article/view/22213/21992

 

@inproceedings{mu2023vaxxhesitancy,
  title={VaxxHesitancy: A Dataset for Studying Hesitancy Towards COVID-19 Vaccination on Twitter},
  author={Mu, Yida and Jin, Mali and Grimshaw, Charlie and Scarton, Carolina and Bontcheva, Kalina and Song, Xingyi},
  booktitle={Proceedings of the International AAAI Conference on Web and Social Media},
  volume={17},
  pages={1052--1062},
  year={2023}
}
DOI: 10.6084/m9.figshare.24013923
title: Database for "Soil inorganic carbon stock and its changes across the Tibetan Plateau during the 1980s–2020s"

description: Database for "Soil inorganic carbon stock and its changes across the Tibetan Plateau during the 1980s–2020s"
DOI: 10.6084/m9.figshare.24013941
title: A high-quality genome assembly highlights Populus ussuriensis genomic characteristics and photosynthetic acclimation to cold

description: A high-quality genome assembly highlights Populus ussuriensis genomic characteristics and photosynthetic acclimation to cold
DOI: 10.6073/pasta/0c9f7d269dfc8bc39d66ae6cc09979f0
title: Long-term Barnacle Settlement Near Creekbank Plots from the Georgia Coastal Ecosystems LTER Fall Marsh Monitoring Program

description: This data set includes long-term observational data on barnacle recruitment at the creekbank, and across a gradient in salinity and distance to ocean. PVC poles were deployed to passively sample barnacle settlement. Eight poles were deployed between 4-5 meters apart adjacent to the creekbank vegetation monitoring plots at each GCE LTER permanent monitoring site each Fall beginning in 2012. These poles were then collected the following Fall and all barnacle that settled on the poles were identified and counted on 50cm-long sections of the 8, 3/4" diameter PVC poles. Although a few other barnacle species occur within this estuary, only two species settled on poles: Chthamalus fragilis and Balanus spp. Beginning in 2018, Geukensia dimissa and Oysters (Crassostrea virginica) that settled on the poles were also counted and recorded. This data set includes observations from 2013 to 2021 and will be updated annually to include the prior year observations.
DOI: 10.6084/m9.figshare.14576766
title: Additional file 5 of The Interaction between Rice Genotype and Magnaporthe oryzae Regulates the Assembly of Rice Root-Associated Microbiota

description: Additional file 5: Table S1. OTUs for bacterial and fungal communities.
DOI: 10.6084/m9.figshare.14576766.v1
title: Additional file 5 of The Interaction between Rice Genotype and Magnaporthe oryzae Regulates the Assembly of Rice Root-Associated Microbiota

description: Additional file 5: Table S1. OTUs for bacterial and fungal communities.
DOI: 10.6084/m9.figshare.14576769
title: Additional file 6 of The Interaction between Rice Genotype and Magnaporthe oryzae Regulates the Assembly of Rice Root-Associated Microbiota

description: Additional file 6: Table S2. Topphylum for bacterial and fungal taxa across 8 compartments.
DOI: 10.6084/m9.figshare.14576769.v1
title: Additional file 6 of The Interaction between Rice Genotype and Magnaporthe oryzae Regulates the Assembly of Rice Root-Associated Microbiota

description: Additional file 6: Table S2. Topphylum for bacterial and fungal taxa across 8 compartments.
DOI: 10.6084/m9.figshare.14576748
title: Additional file 10 of The Interaction between Rice Genotype and Magnaporthe oryzae Regulates the Assembly of Rice Root-Associated Microbiota

description: Additional file 10: Table S6. The statistic analysis of KEGG enrichment for each group.
DOI: 10.6084/m9.figshare.14576748.v1
title: Additional file 10 of The Interaction between Rice Genotype and Magnaporthe oryzae Regulates the Assembly of Rice Root-Associated Microbiota

description: Additional file 10: Table S6. The statistic analysis of KEGG enrichment for each group.
DOI: 10.6084/m9.figshare.14576772
title: Additional file 7 of The Interaction between Rice Genotype and Magnaporthe oryzae Regulates the Assembly of Rice Root-Associated Microbiota

description: Additional file 7: Table S3. Statistical table of alpha diversity index for bacterial and fungal communities.
DOI: 10.6084/m9.figshare.14576772.v1
title: Additional file 7 of The Interaction between Rice Genotype and Magnaporthe oryzae Regulates the Assembly of Rice Root-Associated Microbiota

description: Additional file 7: Table S3. Statistical table of alpha diversity index for bacterial and fungal communities.
DOI: 10.6073/pasta/fbc06e1d9b4223b97117cdac28e4ed03
title: Long-term adult and juvenile periwinkle snail (Littoraria irrorata) density in mid-marsh and creekbank plots from the Georgia Coastal Ecosystems LTER Fall Monitoring Program

description: This data set includes long-term observation of the abundance of periwinkle snail (Littoraria irrorata) at sampling sites within the Georgia Coastal Ecosystem (GCE) LTER study area. Visual counts of adult Littoraria were conducted within 0.5m x 0.5m quadrats in-line with permanent GCE vegetation plots. Juvenile Littoraria (1-4mm shell length) were found and counted by looking inside all leaf furls within a nested quadrat (0.25m x 0.25m). In each marsh zone at each GCE LTER permanent monitoring site, we counted the number of adult and juvenile snails in 8 creekbank and 12 mid-marsh replicate quadrats. This method was started in 2012 as a new part of the annual GCE monitoring and supplements the invertebrate data that has been collected since October 2000. This data set includes observations from 2012 to 2022 and will be updated annually to include the prior year observations.