cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3827622.v1
title: rbcL_all_Jan2016_full_headers.fasta

description: A reference library of rbcL sequences downloaded from the NCBI database on January 27, 2016, in FASTA format, with head including GID, accession number, and species.
DOI: 10.17632/tddc3sws2k
title: Functional analysis of DoMYB37 in polysaccharides synthesis induced by low phosphorus in Dendrobium officinale

description: Data availability
DOI: 10.6084/m9.figshare.22116884.v1
title: Football data

description: Data from clubs playing in the top division of the Spanish league between the 2010-11 and 2021-22 seasons.
DOI: 10.6084/m9.figshare.24637635.v1
title: 16 Sep to 21 Sep (fpqo format).zip

description: raw data for 11 Sep to 21 Sep period in fpqo format.
DOI: 10.6084/m9.figshare.5715139.v1
title: PPYR_OGS1.1 kallisto RNA-Seq expression quantification (TPM)

description: P. pyralis, RNA-Seq reads were pseudoaligned to Ppyr_OGS1.1 geneset CDSs using Kallisto (v0.44.0)(37) with 100 bootstraps (-b 100), producing transcripts-per-million reads (TPM).
DOI: 10.6084/m9.figshare.1279430.v6
title: DalHouses (grayscale, .jpg)

description: These are the stimuli described in Filliter, J.H., Glover, J.M., McMullen, P.A., Salmon, J.P., & Johnson, S.A. (Under review). The DalHouses: 100 new photographs of houses with ratings of typicality, familiarity, and degree of similarity to faces. <em>Behavior Research Methods. </em>Please contact the first or corresponding authors should you require the stimuli in a different format or size.
DOI: 10.6084/m9.figshare.14865255.v1
title: datalist3deniz.xlsx

description: The dataset contains reverse distance matrix of cities of turkey, and visitor numbers of archaeological sites of Turkey, and related data for the year of 2019
DOI: 10.6084/m9.figshare.22346344.v1
title: Code for biomass

description: code for biomass
DOI: 10.6084/m9.figshare.28015313.v1
title: <b>Pollination and mating dynamics unveiled by orchard-wide pedigree reconstruction in </b><b><i>Acacia crassicarpa</i></b>.

description: Successfully executing breeding or conservation strategies for forest species relies on a comprehensive understanding of their reproductive systems. In this study, we investigated the mating dynamics of an <i>Acacia crassicarpa</i> seed orchard during a mating season. Our analysis involved genotyping 84,315 seedlings using forty-two single nucleotide polymorphism markers (SNP) to reveal parentage in open-pollinated progeny arrays. Our findings indicate that 67.8% of the seedlings originated from within orchard pollinations, 12.8% from a known male parent in a neighboring orchard, and 19.4% exhibited unknown pollen contamination. Each open-pollinated progeny array displayed a high level of male diversity, with an average of 50 out of 58 known male parents. Interestingly, on average, the dominant male contributed 23% of the progeny. Furthermore, we observed significant variation in reproductive success among genotypes, with 50% of parents responsible for 84% of the seed production. Spatial analysis revealed that pollination declined rapidly with distance, highlighting the importance of understanding pollen dispersion patterns. By informing enhanced breeding strategies and contributing to more effective conservation tactics, our study contributes to the sustainable management of <i>Acacia crassicarpa</i> populations and holds significant value for forest researchers working with insect-pollinated tree species.
DOI: 10.17632/r9bzzpbh8t
title: Single leakage dataset for Hanoi and Anytown water distribution networks

description: Leakage has been simulated using the emitter tool in EPANET software in all nodes of Hanoi and Anytown water distribution networks. Each node has leaked in various conditions of demand patterns. Each node leaked in 20 different variations of the 24-hour demand pattern. In each variation, the demand patterns were multiplied to a random number between 0 and 2 (to simulate demand pattern variations over time). In all scenarios the emitter coefficient is equal to 1.
DOI: 10.6084/m9.figshare.25594176.v1
title: Super-resolved snapshot hyperspectral imaging of solid-state quantum emitters for high-throughput integrated quantum technologies

description: Source date in .mat format and matlab scripts for preparing the figures in the main text.
DOI: 10.6084/m9.figshare.13139492.v5
title: Bridges and Culverts GB

description: A geo-referenced database of 110,194 road-river crossings for Great Britain (zip file). Crossings validated, or predicted using Boosted Regression Trees, as bridges or culverts in Great Britain are provided in the .csv file. These data are published alongside: Januchowski-Hartley et al 2021 Environ. Res. Infrastruct. Sustain. in press https://doi.org/10.1088/2634-4505/ac068c (to be updated).Note: updates to the road-river crossing database will be made as more data are validated, and integration of road fords will be included.
DOI: 10.6084/m9.figshare.28030196.v2
title: Data from the C-LSAT2.1 Dataset for the Paper: 'A New Evaluation of Observed Changes in Diurnal Temperature Range'

description: This dataset contains homogenized monthly Tmax and Tmin anomalies from January 1850 to December 2023, along with homogenized monthly DTR anomalies from January 1900 to December 2023, all gridded at a 5° x 5° resolution, with climatology based on the 1961-1990 period.
DOI: 10.6084/m9.figshare.7028258.v1
title: Supplementary Material for: Exposure to Environmental Tobacco Smoke and Prevalence of Atopic Dermatitis among Adolescents in Kuwait

description: <b><i>Background:</i></b> This study aimed to (i) assess the prevalence of exposure to environmental tobacco smoke (ETS) at homes, (ii) assess the prevalence of atopic dermatitis and (iii) evaluate the association between ETS exposure and atopic dermatitis status among adolescents. <b><i>Methods:</i></b> During October 2015, a cross-sectional study design was implemented using a self-administered, modified version of the ISAAC (International Study of Asthma and Allergies in Childhood) questionnaire among students enrolled in nine high schools of one of the six governorates of Kuwait. Prevalence of ETS exposure at home (1 or more smokers at home vs. none) and atopic dermatitis were computed. A multivariable log-binomial regression model was used to evaluate the adjusted association between ETS exposure and atopic dermatitis. <b><i>Results:</i></b> Of 800 invited students, 746 (93.3%) participated, of whom 74.8% were Kuwaiti and 50.1% were female with a mean (SD) age of 16.8 (0.68) years. Prevalence of ETS exposure at home was 54%. Prevalence of atopic dermatitis was 14.9%. A final multivariable log-binomial regression model showed that compared with the adolescents free from atopic dermatitis, adolescents with atopic dermatitis were significantly more likely to have had ETS exposure at home (adjusted prevalence ratio = 1.49; 95% CI: 1.03–2.14; <i>p</i> = 0.034) or tended to be female (adjusted prevalence ratio = 1.42; 95% CI: 0.99–2.03; <i>p</i> = 0.054). <b><i>Conclusions:</i></b> A high prevalence of ETS exposure at home among adolescents was recorded. ETS exposure and female gender were significantly associated with atopic dermatitis status. Intervention fostering voluntary adoption of a smoke-free home rule may help protect the adolescents against ETS exposure and alleviate the menace of associated morbidity.
DOI: 10.6084/m9.figshare.7814246.v1
title: GlobalEssentialMedicinesDatabase.xlsx

description: <b>Global Essential Medicines Database</b><b><br></b> In June of 2017, we searched the WHO Essential Medicines and Health Products Information Portal, an online repository that contains hundreds of publication on medicines and health products related to WHO priorities, and a full-section dedicated to national essential medicines lists (EMLs). A WHO information specialist actively searched for updated versions of national EMLs, including national formularies, reimbursement lists, and lists based on standard treatment guidelines. <br>We included all national EMLs that were posted on the WHO’s NEMLs Repository irrespective of publication date and language. When we found more than one national EML from the same country, we used the most recent. We excluded documents that were not EMLs, such as prescribing guidelines. We also included the 20th edition of the WHO Model EML (2017) in this database. <br>From each EML we abstracted medicines using International Nonproprietary Names (INNs). For medicines whose names were not in English we used the Anatomical Therapeutic Chemical (ATC) classification system, if available, or translated the names with the help of Google Translate. We listed each medicine individually, whether it was part of a combination product or not. We treated as the same medicine bases and their salts (e.g. promethazine hydrochloride and promethazine) as well as different compounds of the same vitamin or mineral (e.g. ferrous fumarate and ferrous sulfate). We excluded diagnostic agents, antiseptics, disinfectants, and saline solutions.<br> In this database "1" and "0" indicate the presence or absence of the medicine respectively on an EML.
DOI: 10.17632/233syckcrz
title: Womenpreneur

description: The sample data are from 358 female entrepreneurs in Indonesia. These demographic data were collected using a cross-sectional questionnaire through a bold survey and analyzed using SmartPLS. These data are used to investigate and analyze factors that influence the failure of female entrepreneurs. The variables identified are innovation capability, green process innovation, green product innovation, and digital innovation. The analyzed data will be useful in providing significant contributions to the literature related to green and digital innovation in female entrepreneurship and provide strategic insights for stakeholders in designing policies or interventions that support gender aspirations and inclusion in the business sector. These data provide input for policy makers in the performance aspirations of entrepreneurs including female entrepreneurs.
DOI: 10.17632/b5r4yztghx
title: Data for: Bayesian Hierarchical Spatial Models: Implementing the Besag York Mollié Model in Stan

description: File bym_nyc_study.csv contains data on youth pedestrian injuries and census data for NYC census tracts as follows: census_tract: 2010 Census tract ID ped_injury_5to18: Number of pedestrian injuries from 2005-2014 recorded by the Department of Transportation for children ages 5-18 years youth_pop_5to18: 2010 Census population counts of youth ages 5 to 18 commute_priv_vehicle: Percentage commuters who traveled to work primarily by a private vehicle, from the American Community Survey for the years 2010-2014 med_hhincome: Median household income from American Community Survey for the years 2010-2014 avg_ann_daily_traffic: Maximum value of street-level annual average daily traffic values for that census tract from 2015, adapted from the NYS Department of Transportation fragment_index: Standardized composite index of American Community Survey estimates of vacant housing units, householders living alone, non-owner occupied housing units, and population having moved within the previous year. Each metric was standardized with a mean of zero and added together into a single index. Disclaimer: Pedestrian crash data were originally compiled by the New York City Department of Transportation (DOT) for governmental purposes; the information has subsequently been stratified and aggregated for analysis by the authors of this manuscript. DOT and the City of New York make no representation as to the accuracy or usefulness of the information provided by this application or the information’s suitability for any purpose and disclaim any liability for omissions or errors that may be contained therein.
DOI: 10.6084/m9.figshare.25234051.v1
title: Butterfly abundance along an urban gradient in Montréal, Quebec, Canada

description: This dataset consists of field data collected from 44 open sites located around Montréal, Quebec, Canada that were visited in rotation from May to August in 2017 or 2018. During each visit to a site, two observers walked a designated 300 m transect and collected data on the identity and abundance of all butterflies observed. Field data was analyzed to show that urban butterfly communities were dominated by a few, highly abundant, non-native species. The data also showed that for most of the butterfly community, species with longer flight periods were more common in urban areas. Finally, the data showed that urban butterfly communities tended to be more homogenized than rural communities at both the taxonomic and functional levels.
DOI: 10.6084/m9.figshare.25341217.v1
title: Supplementary Material for: Comprehensive study of chromosomal CNVs and genomic variations predicting overall survival in Myelodysplastic syndromes

description: Introduction: Myelodysplastic syndrome (MDS) is a heterogeneous disease characterized by cytopenia, marrow dysplasia and has a propensity to develop into acute myeloid leukemia (AML). The disease progression is majorly affected by genetic defects. However, about 40% - 50% of patients with MDS present with a normal karyotype and develop different courses of disease. Hence there remains a room to advance the biological understanding and to find molecular prognostic markers for cytogenetically normal (CN) MDS.
Methods: We performed a high-resolution CGH + SNP array along with NGS of 77 primary diagnosed MDS patients and also they were clinically followed up. 
Results: Our study revealed 82 clinically significant genomic lesions (losses/gains) in 49% of MDS patients. CGH + SNP array reduced the proportion of normal karyotype by 30%. SNP array in combination with NGS confirmed the biallelic loss of function of the TP53 gene (2/6), which is a clinically relevant biomarker and new genetic-based MDS entity i.e. MDS-biTP53 as per the new WHO classification 2022. Genomic region 2p22.3 presented with frequent lesions and also with a more hazard ratio (2.7, 95% CI 0.37 – 21) when analyzed by Kaplan Meier survival analysis. 
Conclusion: CGH + SNP array changed the cytogenetic and IPSS-R risk group in 18% and 13% of patients respectively with an improved prediction of prognosis. This study emphasizes the cytogenetic heterogeneity of MDS and highlights that abnormality with chromosome 2 may have a diagnostic and prognostic impact.
DOI: 10.6084/m9.figshare.5012747.v1
title: weather.data.csv

description: This .csv contains min and max temp and precipitation daily downloaded from PRISM for 46 field stations around the U.S. from 2003-2015.
DOI: 10.6084/m9.figshare.5126077.v1
title: Supplementary Material for: Visual Acuity in Mammals: Effects of Eye Size and Ecology

description: Previous comparative research has attributed interspecific variation in eye size among mammals to selection related to visual acuity. Mammalian species have also been hypothesized to differ in visual acuity partly as a result of differences in ecology. While a number of prior studies have explored ecological and phylogenetic effects on eye shape, a broad comparative analysis of the relationships between visual acuity, eye size and ecology in mammals is currently lacking. Here we use phylogenetic comparative methods to explore these relationships in a taxonomically and ecologically diverse sample of 91 mammal species. These data confirm that axial eye length and visual acuity are significantly positively correlated in mammals. This relationship conforms to expectations based on theoretical optics and prior analyses of smaller comparative samples. Our data also demonstrate that higher visual acuity in mammals is associated with: (1) diurnality and (2) predatory habits once the effects of eye size and phylogeny have been statistically controlled. These results suggest that interspecific variation in mammalian visual acuity is the result of a complex interplay between phylogenetic history, visual anatomy and ecology.
DOI: 10.6084/m9.figshare.16822978.v7
title: deepMTJ test dataset

description: <b>Instroduction</b>This dataset comprises 1344 images of muscle-tendon junctions recorded with 3 ultrasound imaging systems (Aixplorer V6, Esaote MyLab60, Telemed ArtUs), on 2 muscles (Lateral Gastrocnemius, Medial Gastrocnemius), and 2 movements (isometric maximum voluntary contractions, passive torque movements).<br><br><b>Detailed Info: https://osf.io/wgy4d</b><br><br><b>Repository Structure </b><code>2021_Unet_deepmtj_ieeetbme_model.tf</code>: trained model weights of our network published in Leitner <em>et al.</em> 2021a<code>testset_frames.h5</code>: testset frames saved in an hdf5 file structure. The structure of the first frame corresponds to: ['testset_fullres/frame_0001'] and ['testset_256x128px/frame_0001'].<code>testset_frames.zip</code>: jpg-images of testset frames in full resolution and in model input resolution (256x128px)<code>testset_frames_annotated.zip</code>: expert annotated jpg-images of testset frames in full resolution and in model input resolution (256x128px)<code>testset_logic_labels.csv</code>: logic array containing following information for each frame ['Frame Nr.', 'Instrument', 'Muscle', 'Movement', 'Expert X (fullres)', 'Expert Y (fullres)', 'Expert X (256x128px)', 'Expert Y (256x128px)']<br>
DOI: 10.6084/m9.figshare.24319207.v1
title: Data base in English

description: The database contains information about 434 Peruvian nurses. The research's main objective was to determine the psychometric properties of the BCI by means of a confirmatory factor analysis (CFA). All items and associated factors are included in the dataset.
DOI: 10.6084/m9.figshare.27001282.v2
title: JDL_2024_04

description: Le dépôt inclut tous les documents relatifs au processus de révision par les pairs de l'article, y compris les rapports des évaluateurs, les évaluations éditoriales, les réponses des auteurs, ainsi que tout autre matériel pertinent échangé lors des étapes de révision et de correction
DOI: 10.17632/86m54cxrkf
title: Data for: Root cause analysis for inverters in photo-voltaic solar plants

description: Random Committee (RC) with Random_test4 and Logistic Model Trees (LMT) with LMTver1.
DOI: 10.17632/gv88vzb7vn
title: Data for: The click beetle mitogenomics with the definition of a new subfamily Hapatesinae from Australasia (Coleoptera: Elateridae)

description: Supporting datasets and newly sequenced annotated mitogenomes.
DOI: 10.6084/m9.figshare.26200007.v1
title: Single-Atom Alloy Dataset for Machine Learning

description: OverviewThis dataset, contained within <code>Database.csv</code>, is a comprehensive collection tailored for machine learning applications in the field of catalysis and materials science, focusing on single-atom alloys. It encompasses a wide array of data with 10,950 entries, each featuring 85 intrinsic descriptors alongside novel information on the predicted C-H dissociation energy barriers and reaction rates. These intrinsic descriptors include a variety of element and surface properties extracted from renowned databases like the Materials Project and Pymatgen, as well as surface structural features and characteristics derived through expert knowledge.Intrinsic DescriptorsThe 85 intrinsic descriptors provided in this dataset offer a detailed insight into the properties of single-atom alloys. These descriptors cover:<b>Element Properties:</b> Extracted from the Materials Project and Pymatgen databases, these properties include atomic size, electronegativity, and other elemental characteristics critical for the study of material properties.<b>Surface Properties:</b> Features related to the surface characteristics of the alloys, which play a significant role in their catalytic behavior and interaction with reactants.<b>Surface Structural Features:</b> Detailed information on the structural aspects of the alloy surfaces, which can influence the material's catalytic activity and stability.<b>Expert-Derived Features:</b> A set of features developed through expert knowledge, combining various data points to form comprehensive descriptors for machine learning applications.Predicted Properties<b>C-H Dissociation Energy Barrier:</b> A key metric for evaluating the catalytic efficiency of single-atom alloys, particularly in processes involving hydrocarbons.<b>Reaction Rates:</b> Provides valuable insights into the kinetics of reactions facilitated by single-atom alloys, crucial for the development and optimization of catalytic processes.
DOI: 10.6084/m9.figshare.26826130.v1
title: Incubators Role in Entrepreneurship Development of MSME Sector in Mizoram

description: This study examines the role of Business Incubation Centres in supporting start-ups and promoting entrepreneurial activities in Mizoram, a small landlocked state in India with a tertiary sector-dominated economy. Primary data was collected through a field survey conducted between March and July 2024, involving 63 incubatees and five incubators. The study employed questionnaires to determine the support offered by incubators and how it is perceived by incubatees. Statistical tools such as mean score, <i>t-</i>test, chi-square test, and binary logistic regression were used to analyse the data. The results indicate that incubatees in the Start-up stage had the highest overall perception of entrepreneurial development dimensions, followed by the Growth and Developing stages. MZUIC had the highest incubatee satisfaction rate (87 per cent), while MZUBN reported lower satisfaction (60 per cent). Logistic regression analysis revealed that the Overall Dimension Score significantly predicted incubatee satisfaction, with a 42.3 per cent increase in satisfaction odds for each one-unit increase in the score. The study highlights the need for targeted support mechanisms within the incubation framework to address the specific needs of entrepreneurs in Mizoram and further exploration of the entrepreneurial ecosystem to inform policy decisions aimed at fostering entrepreneurship in the region.
DOI: 10.6084/m9.figshare.6729383.v1
title: R Notebook describing statistical analyses

description: R notebook that outlines statistical tests used in doi: https://doi.org/10.1101/358176. Included is the R markdown file (.Rmd), an html file (.html), and a word file (.docx) with all code used to fit the models. All models are named according to the figure panel that represents the data they are using.<br>
DOI: 10.17632/54tyv92wwn
title: Dataset of "Site-specific fears: Negev gerbils from same points of origin share anti-predator behavior when translocated to new environments"

description: Data and code for the manuscript of same name. The html file contains code and the csv file is the data. More information can be found in the study.
DOI: 10.17632/sjjk9tmtrp
title: Protective roles of genistein and icaritin in skin barrier integrity and hydration in an atopic dermatitis model

description: Raw data for the cell viability and cytotoxicity assay results, as well as qRT-PCR data.
DOI: 10.6084/m9.figshare.13233860.v1
title: MEFISTO: Data for tutorials

description: Data and pre-trained MEFISTO model to run the vignettes and tutorials provided at https://biofam.github.io/MOFA2/MEFISTO.html.<br>* <b>Evodevo application:</b> Input data is provided as <i>evodevo.csv</i> and <i>evodevo.RData</i>, the trained MEFISTO model is provided in <i>evodevo_model.hdf5</i> * <b>Longitudinal microbiome application</b>: Input data is provided as <i>microbiome_data.csv</i> and <i>microbiome_features_metadata.csv</i>, the trained MEFISTO model is provided in <i>microbiome_model.hdf5</i> * <b>single cell multi-omics application</b>: Input data is provided as <i>scnmt_data.txt.gz</i><br> and <i>scnmt_sample_metadata.txt</i> the trained MEFISTO model is provided in <i>scnmt_mefisto_model.rds</i> * <b>spatial transcriptomics application</b>: Input data is downloaded as described in the tutorial, the trained MEFISTO model is provided in <i>ST_model.hdf5</i><br><br>