cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/6zxmh-0hb77
title: Agrobacterium tumefaciens

description: C58 wild type
description: <strong>Tilt Series Date:</strong> 2013-07-28</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Polara</p>
<strong>Collaborators and Roles:</strong> Pat Zabryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> C58 wild type</p>
<strong>Sample Preparation:</strong> 200uM AS, grown on agar + liquid for 2 days</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-28-6/3dimage_29390/</p>c58_au20006_part121_3.rec,  Reconstruction (Pixel Size 1.92 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-28-6/3dimage_29390/c58_au20006_part121_3.rec"
        > <i class="download icon"></i> Download </a></p>

        c58_au20006.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-28-6/rawdata/c58_au20006.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5522/04/26531686.v2
title: PitVis-2023 Challenge: Endoscopic Pituitary Surgery videos

description: The first public dataset containing both step and instrument annotations of the endoscopic TransSphenoidal Approach (eTSA). The dataset includes 25-videos (video_{video_number}.mp4) and the corresponding step and instrument annotation (annotations_{video_number}.csv). Annotation metadata mapping the numerical value to its formal description is provided (map_steps.csv and map_instrument.csv), as well as video medadata (video_encoder_details.txt). Helpful scripts and baseline models can be found on: https://github.com/dreets/pitvis. This dataset is released as part of the PitVis Challenge, a sub-challenge of the EndoVis Challenge hosted at the annual MICCAI conference (Vancouver, Canada on 06-Oct-2024). More details about the challenge can be found on the challenge website: https://www.synapse.org/Synapse:syn51232283/wiki/621581. The companion paper with comparative models is titled: "PitVis-2023 Challenge: Workflow Recognition in videos of Endoscopic Pituitary Surgery" (Adrito Das et al.). Please cite this paper if you have used this dataset: https://doi.org/10.1016/j.media.2025.103716.
DOI: 10.5522/04/26531686.v1
title: PitVis Challenge: Endoscopic Pituitary Surgery videos

description: The first public dataset containing both step and instrument annotations of the endoscopic TransSphenoidal Approach (eTSA). The dataset includes 25-videos (video_{video_number}.mp4) and the corresponding step and instrument annotation (annotations_{video_number}.csv). Annotation metadata mapping the numerical value to its formal description is provided (map_steps.csv and map_instrument.csv), as well as video medadata (video_encoder_details.txt). Helpful scripts and baseline models can be found on: https://github.com/dreets/pitvis. This dataset is released as part of the PitVis Challenge, a sub-challenge of the EndoVis Challenge hosted at the annual MICCAI conference (Vancouver, Canada on 06-Oct-2024). More details about the challenge can be found on the challenge website: https://www.synapse.org/Synapse:syn51232283/wiki/621581. The companion paper with comparative models is titled: "PitVis Challenge: Workflow Recognition in videos of Endoscopic Pituitary Surgery" (Adrito Das et al, in-press). Please cite this paper if you have used this dataset.
DOI: 10.22002/v4s4w-44x94
title: GFP-MreB fusion methanol control

description: Raw data files of GFP-MreB fusion methanol control
description: <strong>Tilt Series Date:</strong> 2009-08-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, REACH</p>
<strong>Collaborators and Roles:</strong> Experiments were done by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The GFP-MreB-expressing NA1000 cells were cultured to exponential phase and treated with methanol as a control.</p>
<strong>Sample Preparation:</strong> 10 nm gold.</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-53/rawdata/</p>09aug01a_methanolgfmr1_053.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-53/rawdata/09aug01a_methanolgfmr1_053.mrc"
        > <i class="download icon"></i> Download </a></p>

        09aug01a_methanolgfmr1_053_full.rec,  Reconstruction (Pixel Size 2.4 nm), 367.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-53/3dimage_6163/09aug01a_methanolgfmr1_053_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/p5agr-33235
title: 1003_deletion

description: Raw data files of 1003_deletion
description: <strong>Tilt Series Date:</strong> 2009-10-06</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -16.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> Cells provided by Arash Komeili, data collected by ZL</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Probably stationary phase</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/1 or R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-06-12/rawdata/</p>09oct06a_A1003c_011.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-06-12/rawdata/09oct06a_A1003c_011.mrc"
        > <i class="download icon"></i> Download </a></p>

        09oct06a_A1003c_011_part.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-06-12/3dimage_10214/09oct06a_A1003c_011_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.28742600.v1
title: PMCanalSeg：用于从 3D CBCT 图像自动分割翼腭管和下颌管的数据集

description: 在正颌手术中，颌面锥形束计算机断层扫描（CBCT）中的神经管分割是提供关键辅助信息的重要环节，对于预防神经损伤等手术并发症具有重要意义。然而，由于数据收集成本高昂、患者隐私保护和伦理限制，高质量、公开可用的颌面CBCT数据集极为稀缺。同时，神经管与图像中背景区域的对比度较低，具有复杂的拓扑结构。这些特性增加了分割任务的难度，使得现有的深度学习分割模型难以获得足够的分割精度，无法满足临床应用的需求。为解决上述问题，促进颌面神经管分割领域的发展，本文构建并发表了专门用于颌面CBCT神经管分割的大规模数据集。该数据集涵盖了各种患者病例，并详细反映了正颌手术中涉及的上颌翼腭管和下颌下颌管的解剖结构。
DOI: 10.15468/dl.fe9rta
title: Occurrence Download

description: A dataset containing 2051 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is one of (Spain, France, Portugal)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cymodocea nodosa"
 ]
}

 The dataset includes 2051 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045546-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/8s9zp-npv57
title: Hyphomonas session8 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-03-06</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 5nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-06-24/rawdata/</p>09mar06a_20d_024.mrc,  Tilt Series (Pixel Size 0.632 nm), 553.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-06-24/rawdata/09mar06a_20d_024.mrc"
        > <i class="download icon"></i> Download </a></p>

        09mar06a_20d_024_full.rec,  Reconstruction (Pixel Size 1.264 nm), 377.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-06-24/3dimage_7416/09mar06a_20d_024_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9bmyg-c6819
title: MT-MreB treated w/ aurothiogluco

description: Raw data files of MT-MreB treated w/ aurothiogluco
description: <strong>Tilt Series Date:</strong> 2009-07-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR Peach</p>
<strong>Collaborators and Roles:</strong> Cell culture and treatment by Zhuo Li. Data collected by Zhuo Li. Processed by Zhuo Li. </p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponentially growing MT310 cells were treated with 50 ug/ml aurothioglucose for 20 hours before freezing. </p>
<strong>Sample Preparation:</strong> 10 nm gold. </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-07-21-27/rawdata/</p>09jul21a_mtmrebaurothio1_014.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-07-21-27/rawdata/09jul21a_mtmrebaurothio1_014.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jul21a_mtmrebaurothio1_014_part.rec,  Reconstruction (Pixel Size 2.4 nm), 314.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-07-21-27/3dimage_4844/09jul21a_mtmrebaurothio1_014_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/p9rep-g7g29
title: E. coli (pLE7, 20 uM IPTG)

description: Cells contain WT MreB in the chromosome plus an N-terminal YFP fusion to MreB (YFP-MreB) on the plasmid pLe7. pLE7 also confers a resistance to ampicillin.
description: <strong>Tilt Series Date:</strong> 2011-06-02</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: None μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> Gift from Larry Rothfield</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown at 37 degrees celsius to OD600=0.2 then 20 uM IPTG was added for 2 hours of growth before freezing.</p>
<strong>Sample Preparation:</strong> Vitrobot plunge freezing</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2011-06-02-11/rawdata/</p>20110602_PLE7_16.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2011-06-02-11/rawdata/20110602_PLE7_16.mrc"
        > <i class="download icon"></i> Download </a></p>

        20110602_PLE7_16_part122_38.rec,  Reconstruction (Pixel Size 1.9 nm), 825.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2011-06-02-11/3dimage_19052/20110602_PLE7_16_part122_38.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0v395-qfq76
title: Hyphomonas chq session19 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-06-25</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 2°, constant angular increment, dosage: 75.0 eV/Å²,  defocus: -7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, chloroquine 1.0mg/ml, 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-25-2/rawdata/</p>09jun25a_bx217d_004.mrc,  Tilt Series (Pixel Size 0.632 nm), 536.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-25-2/rawdata/09jun25a_bx217d_004.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jun25a_bx217d_004_full.rec,  Reconstruction (Pixel Size 1.264 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-25-2/3dimage_8078/09jun25a_bx217d_004_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.2vt7dh
title: Occurrence Download

description: A dataset containing 1239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is Catharus fuscescens",
 "HasCoordinate is TRUE",
 "Year is 2024"
 ]
}

 The dataset includes 1239 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045549-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/6v5b1-3x059
title: Hyphomonas session7 41KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-02-05</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1.5°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-02-05-70/rawdata/</p>09feb05a_Hm7I_083.mrc,  Tilt Series (Pixel Size 0.512 nm), 704.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-02-05-70/rawdata/09feb05a_Hm7I_083.mrc"
        > <i class="download icon"></i> Download </a></p>

        09feb05a_Hm7I_083_1k.rec,  Reconstruction (Pixel Size 1.024 nm), 47.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-02-05-70/3dimage_7190/09feb05a_Hm7I_083_1k.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tcp4j-y6r45
title: Pva 020710 MP47

description: Prosthecobacter vanneervenii, 10feb07a_MP47_Pva_exp_057, helical structure,
description: <strong>Tilt Series Date:</strong> 2010-02-07</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter vanneervenii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-02-07-50/rawdata/</p>10feb07a_MP47_Pva_exp_057.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-02-07-50/rawdata/10feb07a_MP47_Pva_exp_057.mrc"
        > <i class="download icon"></i> Download </a></p>

        10feb07a_MP47_Pva_exp_057_part.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-02-07-50/3dimage_14609/10feb07a_MP47_Pva_exp_057_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.29986573
title: Figure S3 source data for TPJ manuscript

description: Manuscript title : <b>T-DNA orientation, distance between two T-DNAs, and the transformation target cells significantly impact vector backbone integration and efficiency of generating marker-free transgenic plants in a co-transformation system</b>
DOI: 10.6084/m9.figshare.29986573.v1
title: Figure S3 source data for TPJ manuscript

description: Manuscript title : <b>T-DNA orientation, distance between two T-DNAs, and the transformation target cells significantly impact vector backbone integration and efficiency of generating marker-free transgenic plants in a co-transformation system</b>
DOI: 10.22002/aj82z-9q934
title: Pva 020209 377

description: Prosthecobacter vanneervenii, 09feb08c__Pva_grid_020209_377_w1_011, putative btub structure (2 tubes)
description: <strong>Tilt Series Date:</strong> 2009-02-08</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter vanneervenii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-08-44/rawdata/</p>09feb08c__Pva_grid_020209_377_w1_011.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-08-44/rawdata/09feb08c__Pva_grid_020209_377_w1_011.mrc"
        > <i class="download icon"></i> Download </a></p>

        09feb08c__Pva_grid_020209_377_w1_011.rec,  Reconstruction (Pixel Size 1.9 nm), 276.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-08-44/3dimage_13590/09feb08c__Pva_grid_020209_377_w1_011.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tn6hj-b1j72
title: Pseudoalteromonas Iuteoviolacea MP126

description: Chloroform purification from P Iuteo DvipABhcpI Dbact2
description: <strong>Tilt Series Date:</strong> 2013-07-10</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Pseudoalteromonas luteoviolacea</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: 10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> purified and processed by Gregor, Collaboration with Newman lab</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Chloroform Purification</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, Yi-Wei1</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2013-07-10-5/rawdata/</p>2013_07_10_mp130_0021.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2013-07-10-5/rawdata/2013_07_10_mp130_0021.mrc"
        > <i class="download icon"></i> Download </a></p>

        2013_07_10_mp130_0021_2k_secs_full.rec,  Reconstruction (Pixel Size 1.31 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2013-07-10-5/3dimage_28906/2013_07_10_mp130_0021_2k_secs_full.rec"
        > <i class="download icon"></i> Download </a></p>