cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27329581
title: Additional file 2 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 2: T. cruzi clones and MIX samples used in the multiclonal complexity validation.
DOI: 10.6084/m9.figshare.27329581.v1
title: Additional file 2 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 2: T. cruzi clones and MIX samples used in the multiclonal complexity validation.
DOI: 10.6084/m9.figshare.27329584
title: Additional file 3 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 3: T. cruzi clones and hybrid samples used in the initial polyploidy complexity assessment.
DOI: 10.6084/m9.figshare.27329584.v1
title: Additional file 3 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 3: T. cruzi clones and hybrid samples used in the initial polyploidy complexity assessment.
DOI: 10.6084/m9.figshare.27329587
title: Additional file 4 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 4: Leishmania clones and hybrid samples used in the initial polyploidy complexity assessment from Louradour 2021.
DOI: 10.6084/m9.figshare.27329587.v1
title: Additional file 4 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 4: Leishmania clones and hybrid samples used in the initial polyploidy complexity assessment from Louradour 2021.
DOI: 10.6084/m9.figshare.27329590
title: Additional file 5 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 5: Leishmania clones and hybrid samples used in the initial polyploidy complexity assessment from Cata-Preta 2022.
DOI: 10.6084/m9.figshare.27329590.v1
title: Additional file 5 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 5: Leishmania clones and hybrid samples used in the initial polyploidy complexity assessment from Cata-Preta 2022.
DOI: 10.6084/m9.figshare.27329593
title: Additional file 6 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 6: Trypanosomatid primary isolates, clones and stocks used in complexity assessment.
DOI: 10.6084/m9.figshare.27329593.v1
title: Additional file 6 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 6: Trypanosomatid primary isolates, clones and stocks used in complexity assessment.
DOI: 10.6084/m9.figshare.27329596
title: Additional file 7 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 7: Leishmania hybrids from Sri Lanka used in complexity assessment, described in Lypaczewski 2021.
DOI: 10.6084/m9.figshare.27329596.v1
title: Additional file 7 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 7: Leishmania hybrids from Sri Lanka used in complexity assessment, described in Lypaczewski 2021.
DOI: 10.6084/m9.figshare.27329599
title: Additional file 8 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 8: Reference genomes used in read mapping.
DOI: 10.6084/m9.figshare.27329599.v1
title: Additional file 8 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 8: Reference genomes used in read mapping.
DOI: 10.6084/m9.figshare.27329605
title: Additional file 10 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 10: Evaluation of the impact of SNP counts on complexity estimations for the MIX samples.
DOI: 10.6084/m9.figshare.27329605.v1
title: Additional file 10 of Detecting complex infections in trypanosomatids using whole genome sequencing

description: Supplementary Material 10: Evaluation of the impact of SNP counts on complexity estimations for the MIX samples.
DOI: 10.6084/m9.figshare.27329620
title: Additional file 1 of Cardiomyopathies in 100,000 genomes project: interval evaluation improves diagnostic yield and informs strategies for ongoing gene discovery

description: Additional file 1: All supplementary tables. Table S1 Candidate gene list used as part of the re-analysis of paediatric cardiomyopathy probands. Table S2 List of genes included in different paediatric or syndromic cardiomyopathy panels. Table S3 List of genes associated with cardiomyopathy identified from literature. Table S4 List of genes in version 1 of the UK PanelApp cardiomyopathy panels. Table S5 Filters used for de novo variant annotations in 100,000 Genomes Project taken from Genomics England Research Documentation, https://re-docs.genomicsengland.co.uk/de_novo_data/. Table S6 Demographic and clinical details of the paediatric and adult cardiomyopathy cohorts when stringent criteria are used to define children (age at consent ≤ 16 years). Table S7 Family structures at enrolment for the paediatric and adult cardiomyopathy cohorts when stringent criteria are used to define children (age at consent ≤ 16 years). Table S8 Number of paediatric and adult cardiomyopathy probands by disease recruitment category in the 100,000 Genome Project and the number and percentage of solved probands, using stringent criteria to define children. Table S9 Recruitment categories used for those paediatric and adult probands (Complex CM probands) not recruited under a cardiomyopathy specific category. Table S10 Variant details for genetically‘solved’ paediatric cardiomyopathy probands following GEL’s initial analysis. Table S11 Variant details for genetically ‘solved’ adult cardiomyopathy probands following GEL’s initial analysis. Table S12 Variant details for paediatric cardiomyopathy probands following a re-analysis.
DOI: 10.6084/m9.figshare.27329643
title: Additional file 5 of NF1 expression profiling in IDH-wildtype glioblastoma: genomic associations and survival outcomes

description: Supplementary Table 1. Summary of NF1 alterations identified on next-generation sequencing in institutional cohort of 542 glioblastoma. Supplementary Table 2. Genomic correlates of NF1 alterations within institutional cohort of 542 glioblastoma. Only genes altered at a frequency &gt; 5% were assessed. P-values were calculated with two-sided Fisher exact test. Supplementary Table 3. Genomic correlates of NF1 alterations within TCGA glioblastoma cohort. Only genes altered at a frequency &gt; 5% were assessed. P-values were calculated with two-sided Fisher exact test. Supplementary Table 4. Genomic correlates of NF1 alterations within CPTAC glioblastoma cohort. Only genes altered at a frequency &gt; 5% were assessed. P-values were calculated with two-sided Fisher exact test. Supplementary Table 5. Immunohistochemical correlates of NF1 genomic status in TMA cohort. Comparisons between categorical variables were performed using the Fisher’s Exact test, and two sample independent t-test was used to compare p53 and Ki67 % positivity between conditions. Supplementary Table 6. Immunohistochemical correlates of NF1 immunostaining in TMA cohort. Comparisons between categorical variables were performed using the Fisher’s Exact test. Supplementary Table 7. Baseline clinicodemographic features of TMA cohort and NF1 immunostaining subgroups. Supplementary Table 8. Univariable and multivariable Cox proportional hazards analysis of overall survival in TMA cohort. Supplementary Table 9. Genomic correlates of NFC immunostaining in subset of NF1-wildtype glioblastomas. Only genes altered at a frequency &gt; 5% were assessed. P-values were calculated with two-sided Fisher exact test. Supplementary Table 10. IHC correlates of NFC immunostaining in subset of NF1-wildtype glioblastomas. Supplementary Table 11. Univariable and multivariable Cox proportional hazards analysis of overall survival in NF1-wildtype subset of TMA cohort.
DOI: 10.6084/m9.figshare.27329643.v1
title: Additional file 5 of NF1 expression profiling in IDH-wildtype glioblastoma: genomic associations and survival outcomes

description: Supplementary Table 1. Summary of NF1 alterations identified on next-generation sequencing in institutional cohort of 542 glioblastoma. Supplementary Table 2. Genomic correlates of NF1 alterations within institutional cohort of 542 glioblastoma. Only genes altered at a frequency &gt; 5% were assessed. P-values were calculated with two-sided Fisher exact test. Supplementary Table 3. Genomic correlates of NF1 alterations within TCGA glioblastoma cohort. Only genes altered at a frequency &gt; 5% were assessed. P-values were calculated with two-sided Fisher exact test. Supplementary Table 4. Genomic correlates of NF1 alterations within CPTAC glioblastoma cohort. Only genes altered at a frequency &gt; 5% were assessed. P-values were calculated with two-sided Fisher exact test. Supplementary Table 5. Immunohistochemical correlates of NF1 genomic status in TMA cohort. Comparisons between categorical variables were performed using the Fisher’s Exact test, and two sample independent t-test was used to compare p53 and Ki67 % positivity between conditions. Supplementary Table 6. Immunohistochemical correlates of NF1 immunostaining in TMA cohort. Comparisons between categorical variables were performed using the Fisher’s Exact test. Supplementary Table 7. Baseline clinicodemographic features of TMA cohort and NF1 immunostaining subgroups. Supplementary Table 8. Univariable and multivariable Cox proportional hazards analysis of overall survival in TMA cohort. Supplementary Table 9. Genomic correlates of NFC immunostaining in subset of NF1-wildtype glioblastomas. Only genes altered at a frequency &gt; 5% were assessed. P-values were calculated with two-sided Fisher exact test. Supplementary Table 10. IHC correlates of NFC immunostaining in subset of NF1-wildtype glioblastomas. Supplementary Table 11. Univariable and multivariable Cox proportional hazards analysis of overall survival in NF1-wildtype subset of TMA cohort.
DOI: 10.15468/dl.b9k3hj
title: Occurrence Download

description: A dataset containing 982 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriosyce rodentiophila F.Ritter"
 ]
}

 The dataset includes 982 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011688-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27329644
title: Additional file 1 of Bank vole genomics links determinate and indeterminate growth of teeth

description: Supplementary Material 1: Permutation test p-values
DOI: 10.6084/m9.figshare.27329644.v1
title: Additional file 1 of Bank vole genomics links determinate and indeterminate growth of teeth

description: Supplementary Material 1: Permutation test p-values
DOI: 10.6084/m9.figshare.27329647
title: Additional file 2 of Bank vole genomics links determinate and indeterminate growth of teeth

description: Supplementary Material 2: Orthology synteny and positive selection test results for all dental genes assessed
DOI: 10.6084/m9.figshare.27329647.v1
title: Additional file 2 of Bank vole genomics links determinate and indeterminate growth of teeth

description: Supplementary Material 2: Orthology synteny and positive selection test results for all dental genes assessed
DOI: 10.6084/m9.figshare.27329650
title: Additional file 3 of Bank vole genomics links determinate and indeterminate growth of teeth

description: Supplementary Material 3: Gapped codon-based alignment for Dspp in fasta formatted sequences
DOI: 10.6084/m9.figshare.27329650.v1
title: Additional file 3 of Bank vole genomics links determinate and indeterminate growth of teeth

description: Supplementary Material 3: Gapped codon-based alignment for Dspp in fasta formatted sequences
DOI: 10.6084/m9.figshare.27329653
title: Additional file 4 of Bank vole genomics links determinate and indeterminate growth of teeth

description: Supplementary Material 4: Gapped codon-based alignment for Aqp1 in fasta formatted sequences
DOI: 10.6084/m9.figshare.27329653.v1
title: Additional file 4 of Bank vole genomics links determinate and indeterminate growth of teeth

description: Supplementary Material 4: Gapped codon-based alignment for Aqp1 in fasta formatted sequences
DOI: 10.6084/m9.figshare.27329659
title: Additional file 6 of Bank vole genomics links determinate and indeterminate growth of teeth

description: Supplementary Material 6: Custom repeat library
DOI: 10.6084/m9.figshare.27329659.v1
title: Additional file 6 of Bank vole genomics links determinate and indeterminate growth of teeth

description: Supplementary Material 6: Custom repeat library
DOI: 10.15468/dl.ng4s4w
title: Occurrence Download

description: A dataset containing 3437 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 {
 "or" : [
 "CoordinateUncertaintyInMeters 0.0-12699.0",
 "CoordinateUncertaintyInMeters 0.0-12799.0"
 ]
 },
 "Geometry POLYGON((-121.56001 29.76031,-86.43988 29.76031,-86.43988 46.71135,-121.56001 46.71135,-121.56001 29.76031))",
 "TaxonKey is Bromus tectorum L."
 ]
}

 The dataset includes 3437 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011689-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3erc4j
title: Occurrence Download

description: A dataset containing 627 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "TaxonKey is Eristalis tenax (Linnaeus, 1758)"
 ]
}

 The dataset includes 627 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011691-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23awgt
title: Occurrence Download

description: A dataset containing 982 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriosyce rodentiophila F.Ritter"
 ]
}

 The dataset includes 982 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011692-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhu9hw
title: Occurrence Download

description: A dataset containing 569457 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "Geometry POLYGON((-260.67313 11.79681,-261.09183 11.89926,-261.84549 9.80218,-262.15952 8.00285,-260.81968 6.98581,-259.18674 5.40409,-258.05625 5.44577,-257.23978 6.09147,-259.64731 9.57518,-260.54752 9.61647,-259.9404 11.77632,-260.67313 11.79681))",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EX, EW, CR, EN, VU, NT, LC, DD, NE)",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 1970-2024"
 ]
}

 The dataset includes 569457 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011690-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jvfbpr
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.85131 18.61457,-97.39915 18.61457,-97.39915 19.7005,-98.85131 19.7005,-98.85131 18.61457))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pinus hartwegii Lindl."
 ]
}

 The dataset includes 333 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011693-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4uqxj4
title: Occurrence Download

description: A dataset containing 982 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriosyce rodentiophila F.Ritter"
 ]
}

 The dataset includes 982 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011694-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ehaqf
title: Occurrence Download

description: A dataset containing 69565 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gorsachius melanolophus (Raffles, 1822)"
 ]
}

 The dataset includes 69565 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011695-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xr6ujc
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Issue is Coordinate rounded",
 "TaxonKey is Crassiclitellata"
 ]
}

 The dataset includes 175 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011696-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thxud8
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sceloporus macdougalli Smith & Bumzahem, 1953"
 ]
}

 The dataset includes 68 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011697-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.daux3u
title: Occurrence Download

description: A dataset containing 442 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eryngium monocephalum Cav."
 ]
}

 The dataset includes 442 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011698-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sz8bfa
title: Occurrence Download

description: A dataset containing 288894 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "Geometry POLYGON((-85.95967 10.01023,-85.39131 10.01023,-85.39131 10.53648,-85.95967 10.53648,-85.95967 10.01023))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 288894 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011687-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qu4e2s
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gorsachius melanolophus (Raffles, 1822)",
 "Geometry POLYGON((121.61304 25.04929, 121.61085 25.0495, 121.60583 25.04833, 121.60672 25.04555, 121.60627 25.04138, 121.60915 25.03876, 121.61668 25.03708, 121.61675 25.03795, 121.61759 25.03972, 121.61724 25.04091, 121.61682 25.04208, 121.61624 25.04317, 121.61507 25.04574, 121.61554 25.0474, 121.61563 25.0488, 121.61304 25.04929))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is not null"
 ]
 }
 ]
}

 The dataset includes 32 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011699-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5sr35
title: Occurrence Download

description: A dataset containing 69565 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gorsachius melanolophus (Raffles, 1822)"
 ]
}

 The dataset includes 69565 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011700-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4dvt5
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gorsachius melanolophus (Raffles, 1822)",
 "Geometry POLYGON((121.61304 25.04929, 121.61085 25.0495, 121.60583 25.04833, 121.60672 25.04555, 121.60627 25.04138, 121.60915 25.03876, 121.61668 25.03708, 121.61675 25.03795, 121.61759 25.03972, 121.61724 25.04091, 121.61682 25.04208, 121.61624 25.04317, 121.61507 25.04574, 121.61554 25.0474, 121.61563 25.0488, 121.61304 25.04929))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is not null"
 ]
 }
 ]
}

 The dataset includes 32 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011701-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ypuwmp
title: Occurrence Download

description: A dataset containing 69565 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gorsachius melanolophus (Raffles, 1822)"
 ]
}

 The dataset includes 69565 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011702-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hnb5rk
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gorsachius melanolophus (Raffles, 1822)",
 "Geometry POLYGON((121.61304 25.04929, 121.61085 25.0495, 121.60583 25.04833, 121.60672 25.04555, 121.60627 25.04138, 121.60915 25.03876, 121.61668 25.03708, 121.61675 25.03795, 121.61759 25.03972, 121.61724 25.04091, 121.61682 25.04208, 121.61624 25.04317, 121.61507 25.04574, 121.61554 25.0474, 121.61563 25.0488, 121.61304 25.04929))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is not null"
 ]
 }
 ]
}

 The dataset includes 32 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011704-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.