cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3801532_d1.v1
title: Additional file 1: Table S1. of Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC 27853

description: A list of complete genomes of Pseudomonas aeruginosa employed in the present study. Table S2. Annotations of ORFs in Prophage 2 predicted in P. aeruginosa ATCC 27853. Table S3. Table S3 Differentially expressed genes in P. aeruginosa ATCC 2853 and PAO1 revealed by DESeq of the RNA-seq data (see supplemented excel file). Table S4 Top 50 ranked genes with numbers of non-synonymous variants between Pseudomonas aeruginosa ATCC 2853 and PAO1 with function description. Table S5 RNA-seq statistics and coverage after quality filtering for PAO1 and ATCC 27853. Fig. S1. Location of prophage B3 in four P. aeruginosa genomes: ATCC 27853, P. aeruginosa NCGM2.S1, P. aeruginosa VRFPA04 and P. aeruginosa Carb01_63. Fig. S2 Distribution of nucleotide change numbers in the genomes of P. aeruginosa ATCC 27853 and PAO1. (ZIP 718Â kb)
DOI: 10.6084/m9.figshare.c.3801532_d1
title: Additional file 1: Table S1. of Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC 27853

description: A list of complete genomes of Pseudomonas aeruginosa employed in the present study. Table S2. Annotations of ORFs in Prophage 2 predicted in P. aeruginosa ATCC 27853. Table S3. Table S3 Differentially expressed genes in P. aeruginosa ATCC 2853 and PAO1 revealed by DESeq of the RNA-seq data (see supplemented excel file). Table S4 Top 50 ranked genes with numbers of non-synonymous variants between Pseudomonas aeruginosa ATCC 2853 and PAO1 with function description. Table S5 RNA-seq statistics and coverage after quality filtering for PAO1 and ATCC 27853. Fig. S1. Location of prophage B3 in four P. aeruginosa genomes: ATCC 27853, P. aeruginosa NCGM2.S1, P. aeruginosa VRFPA04 and P. aeruginosa Carb01_63. Fig. S2 Distribution of nucleotide change numbers in the genomes of P. aeruginosa ATCC 27853 and PAO1. (ZIP 718Â kb)
DOI: 10.6084/m9.figshare.c.3801511_d4
title: Additional file 4: of Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls

description: Significant genes from logistic regression analysis. (XLSX 94Â kb)
DOI: 10.6084/m9.figshare.c.3801544_d1.v1
title: Additional file 1: of Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes

description: Results from every deletion experiment in the article as well as the assignment of gene essentiality for optimal growth from the 6 cell-lines of the two studies used in the validation of the network. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3801544_d1
title: Additional file 1: of Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes

description: Results from every deletion experiment in the article as well as the assignment of gene essentiality for optimal growth from the 6 cell-lines of the two studies used in the validation of the network. (XLSX 54 kb)
DOI: 10.4121/36ab086a-7f29-48be-95f4-d6ffd8fea016
title: Data for article "Investigating the role of spatial thinking in children’s design ideation through an open-ended design-by-analogy challenge"

description: This study used educational design-based research to develop a nature-inspired, design-by-analogy project and investigate the spatial thinking processes of young, novice designers. 16 pupils from an international school in the Netherlands participated in the five-week design project. Multimodal evidence from classroom recordings and pupils' design works were triangulated to offer insight into the key spatial thinking processes involved in their creation of nature-inspired, analogy-based design prototypes. This dataset includes what was used for qualitative analysis in our article, including (1) all pupils' design-related works from the classroom, which have been photographed and anonymized, and (2) anonymized transcription of videos and audio recordings that captured the classroom learning and designing processes.
DOI: 10.4121/36ab086a-7f29-48be-95f4-d6ffd8fea016.v1
title: Data for article "Investigating the role of spatial thinking in children’s design ideation through an open-ended design-by-analogy challenge"

description: This study used educational design-based research to develop a nature-inspired, design-by-analogy project and investigate the spatial thinking processes of young, novice designers. 16 pupils from an international school in the Netherlands participated in the five-week design project. Multimodal evidence from classroom recordings and pupils' design works were triangulated to offer insight into the key spatial thinking processes involved in their creation of nature-inspired, analogy-based design prototypes. This dataset includes what was used for qualitative analysis in our article, including (1) all pupils' design-related works from the classroom, which have been photographed and anonymized, and (2) anonymized transcription of videos and audio recordings that captured the classroom learning and designing processes.
DOI: 10.60656/368ab96b349848c6
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 7 other sites on 23 Jan 2023
DOI: 10.15468/dl.p3xj6z
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathylagus pacificus Gilbert, 1890",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038954-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/24bdb098d0244e3f
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 7 other sites on 24 Jan 2023
DOI: 10.6084/m9.figshare.c.3802513_d11.v1
title: MOESM1 of Reported community-level indoor residual spray coverage from two-stage cluster surveys in sub-Saharan Africa

description: Additional file 1. LQAS decision points used in the analysis.
DOI: 10.6084/m9.figshare.c.3803452_d1.v1
title: Additional file 1: of Behavioral and neural adaptations in response to five weeks of balance training in older adults: a randomized controlled trial

description: Complete data set. (XLSX 51Â kb)
DOI: 10.6084/m9.figshare.c.3803452_d1
title: Additional file 1: of Behavioral and neural adaptations in response to five weeks of balance training in older adults: a randomized controlled trial

description: Complete data set. (XLSX 51Â kb)
DOI: 10.5281/zenodo.14513545
title: Gross-Lafferde Zweig Hoheneggelsen Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.6084/m9.figshare.c.3803674_d2.v1
title: Additional file 2:  of The aquaglyceroporin AQP9 contributes to the sex-specific effects of in utero arsenic exposure on placental gene expression

description: Associations of arsenic exposure with candidate developmental/stemness and arsenic metabolism/transport genes, with and without adjustment for urinary specific gravity. Multivariable linear regression analyses were performed to determine the association of U-As levels with developmental/stemness gene expression in female (sheet 1) or male (sheet 2) fetal placenta, with or without adjustment for urinary specific gravity as indicated. All analyses were adjusted for maternal age. Genes showing differences in coefficient estimates between models of greater than one standard error are highlighted in yellow. (XLSX 72Â kb)
DOI: 10.6084/m9.figshare.c.3803674_d2
title: Additional file 2:  of The aquaglyceroporin AQP9 contributes to the sex-specific effects of in utero arsenic exposure on placental gene expression

description: Associations of arsenic exposure with candidate developmental/stemness and arsenic metabolism/transport genes, with and without adjustment for urinary specific gravity. Multivariable linear regression analyses were performed to determine the association of U-As levels with developmental/stemness gene expression in female (sheet 1) or male (sheet 2) fetal placenta, with or without adjustment for urinary specific gravity as indicated. All analyses were adjusted for maternal age. Genes showing differences in coefficient estimates between models of greater than one standard error are highlighted in yellow. (XLSX 72Â kb)
DOI: 10.6084/m9.figshare.c.3803701_d1.v1
title: MOESM1 of Assessment of renal hemodynamic toxicity of fluid challenge with 0.9% NaCl compared to balanced crystalloid (PlasmaLyteÂŽ) in a rat model with severe sepsis

description: Additional file 1. Study Database. Each column corresponds to one animal. Time is indicated in minutes, other units are mentioned in first, second or third column. Empty box corresponds to lacking data for technical reason (unworkable biologic sampling or video).
DOI: 10.15468/dl.8rb9rz
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathylychnops exilis Cohen, 1958",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038955-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3803731_d2.v1
title: Additional file 2: Table S3. of â  Like sugar in milkâ  : reconstructing the genetic history of the Parsi population

description: The population-wise F ST values based on an autosomal data set for all the populations included in this study. (XLSX 120 kb)
DOI: 10.6084/m9.figshare.c.3803731_d2
title: Additional file 2: Table S3. of â  Like sugar in milkâ  : reconstructing the genetic history of the Parsi population

description: The population-wise F ST values based on an autosomal data set for all the populations included in this study. (XLSX 120 kb)
DOI: 10.6084/m9.figshare.c.3804565_d1
title: Additional file 1: Table S1. of Environmental isolation explains Iberian genetic diversity in the highly homozygous model grass Brachypodium distachyon

description: Genotypes of the studied Spanish Brachypodium distachyon individuals based on nSSR analysis (TXT 12 kb)
DOI: 10.6084/m9.figshare.c.3804565_d2.v1
title: Additional file 2: Table S2. of Environmental isolation explains Iberian genetic diversity in the highly homozygous model grass Brachypodium distachyon

description: Description of the bioclimatic worldclim layers ( http://www.worldclim.org/bioclim ) used in the correlation analysis (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3804565_d2
title: Additional file 2: Table S2. of Environmental isolation explains Iberian genetic diversity in the highly homozygous model grass Brachypodium distachyon

description: Description of the bioclimatic worldclim layers ( http://www.worldclim.org/bioclim ) used in the correlation analysis (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3804559_d3.v1
title: Additional file 3: Table S1. of Social determinants of depression and suicidal behaviour in the Caribbean: a systematic review

description: Characteristics of 55 articles from the Caribbean region describing the social distribution of depression [45â  86, 99, 100â  120]. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.c.3804559_d3
title: Additional file 3: Table S1. of Social determinants of depression and suicidal behaviour in the Caribbean: a systematic review

description: Characteristics of 55 articles from the Caribbean region describing the social distribution of depression [45â  86, 99, 100â  120]. (XLSX 41Â kb)
DOI: 10.15468/dl.rj7kff
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathymaster signatus Cope, 1873",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 21 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038956-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3804547_d3.v1
title: Additional file 3: of Molecular typing of Leptospira interrogans serovar Hardjo isolates from leptospirosis outbreaks in Brazilian livestock

description: Blast analysis for qRT-PCR assay for IS1500, IS1533 and secy. (XLS 100 kb)
DOI: 10.6084/m9.figshare.c.3804577_d8
title: Additional file 7: of In vitro downregulated hypoxia transcriptome is associated with poor prognosis in breast cancer

description: These Tables show the transcript factor analysis of the various clusters, sub-clusters, and hypoxia signatures. (XLSX 544Â kb)
DOI: 10.6084/m9.figshare.c.3804577_d10.v1
title: Additional file 9: of In vitro downregulated hypoxia transcriptome is associated with poor prognosis in breast cancer

description: These heat maps or Tables show the correlation amongst the different clusters, sub-clusters, and signatures based on each one of the four considered clinical datasets. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3804547_d3
title: Additional file 3: of Molecular typing of Leptospira interrogans serovar Hardjo isolates from leptospirosis outbreaks in Brazilian livestock

description: Blast analysis for qRT-PCR assay for IS1500, IS1533 and secy. (XLS 100 kb)
DOI: 10.6084/m9.figshare.c.3804577_d10
title: Additional file 9: of In vitro downregulated hypoxia transcriptome is associated with poor prognosis in breast cancer

description: These heat maps or Tables show the correlation amongst the different clusters, sub-clusters, and signatures based on each one of the four considered clinical datasets. (XLSX 19Â kb)
DOI: 10.15468/dl.wgyrwr
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Inventario Español de Especies Terrestres (MAGRAMA)",
 "TaxonKey is Cervus Linnaeus, 1758"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038951-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14512893
title: Responses of evapotranspiration and gross primary productivity to extreme vapor pressure deficit, shortwave radiation, and soil moisture across China
DOI: 10.5281/zenodo.14512894
title: Responses of evapotranspiration and gross primary productivity to extreme vapor pressure deficit, shortwave radiation, and soil moisture across China
DOI: 10.15468/dl.fbca4v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyraja abyssicola (Gilbert, 1896)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038957-241126133413365/datasets/export for details.
DOI: 10.5258/soton/wp00799
title: Unconstrained and constrained estimates of 2024 total number of people under the age of 18 per grid square at a resolution of 3 arc (approximately 100m at the equator), R2024A version v1.0

description: These data were produced by WorldPop at the University of Southampton. These data include gridded estimates Unconstrained and constrained estimates of 2024 total number of people under the age of 18 per grid square at a resolution of 3 arc (approximately 100m at the equator). These results were produced using the unconstrained and constrained individual countries 2024. This work is part of the WorldPop Global Demographic Data project enabled through funding from the Bill and Melinda Gates Foundation (BMGF), grant number INV-045237. The work and geospatial data processing was led by Bondarenko M., Tejedor Garavito N., Priyatikanto R., Sorichetta A.. Oversight was provided by Tatem A.J.
DOI: 10.5281/zenodo.14509800
title: Reports and debates in selected municipalities - research methodology and raw data

description: The dataset includes:



description of the examined local units (municipalities), with their characteristics in terms of selected indicators, analysis of the reports on the state of the municipality, and analysis of the debates on the report on the state of the municipality,

description of measurement and calibration of data analysis conditions,

report accessibility measurement data

raw data sources.
DOI: 10.5281/zenodo.14509801
title: Reports and debates in selected municipalities - research methodology and raw data

description: The dataset includes:



description of the examined local units (municipalities), with their characteristics in terms of selected indicators, analysis of the reports on the state of the municipality, and analysis of the debates on the report on the state of the municipality,

description of measurement and calibration of data analysis conditions,

report accessibility measurement data

raw data sources.
DOI: 10.6084/m9.figshare.c.3804682_d3.v1
title: Additional file 3: Table S1. of Polysaccharide compositions of collenchyma cell walls from celery (Apium graveolens L.) petioles

description: The detail assignment of polysaccharides from celery collenchyma cell walls and fractions. (DOCX 14 kb)
DOI: 10.6084/m9.figshare.c.3804682_d3
title: Additional file 3: Table S1. of Polysaccharide compositions of collenchyma cell walls from celery (Apium graveolens L.) petioles

description: The detail assignment of polysaccharides from celery collenchyma cell walls and fractions. (DOCX 14 kb)
DOI: 10.6084/m9.figshare.c.3805375_d1.v1
title: Additional file 1: Table S1. of Dated tribe-wide whole chloroplast genome phylogeny indicates recurrent hybridizations within Triticeae

description: Accessions considered in the study. Overview of the material considered in this study. For all materials, the GenBank identifier, the accession and species name as used in this study (Species) as well as their species synonyms used in the donor seed banks or in the NCBI GenBank (Material source/Reference) are provided. The genome symbol, and the country of origin, where the material was originally collected are given. The ploidy level measured in the scope of this study and the information if a herbarium voucher could be deposited in the herbarium of IPK Gatersleben (GAT) is given. Genomic formulas of tetraploids and hexploids are given as â  female x male parentâ  . The genomes of Aegilops taxa follow Kilian et al. [74] and Li et al. [84]. Genome denominations for Hordeum follow Blattner [107] and Bernhardt [12] for the remaining taxa. (XLS 84Â kb)
DOI: 10.6084/m9.figshare.c.3805375_d2.v1
title: Additional file 2: Table S2. of Dated tribe-wide whole chloroplast genome phylogeny indicates recurrent hybridizations within Triticeae

description: Read numbers mapping to the complete chloroplast sequences and ndhF. Number of reads mapping and mean coverage for the entire chloroplast genome and ndhF after the removal of duplicated reads. Also the proportions of all reads mapping to the chloroplast that mapped to ndhF are given. (XLS 66Â kb)
DOI: 10.6084/m9.figshare.c.3805375_d1
title: Additional file 1: Table S1. of Dated tribe-wide whole chloroplast genome phylogeny indicates recurrent hybridizations within Triticeae

description: Accessions considered in the study. Overview of the material considered in this study. For all materials, the GenBank identifier, the accession and species name as used in this study (Species) as well as their species synonyms used in the donor seed banks or in the NCBI GenBank (Material source/Reference) are provided. The genome symbol, and the country of origin, where the material was originally collected are given. The ploidy level measured in the scope of this study and the information if a herbarium voucher could be deposited in the herbarium of IPK Gatersleben (GAT) is given. Genomic formulas of tetraploids and hexploids are given as â  female x male parentâ  . The genomes of Aegilops taxa follow Kilian et al. [74] and Li et al. [84]. Genome denominations for Hordeum follow Blattner [107] and Bernhardt [12] for the remaining taxa. (XLS 84Â kb)
DOI: 10.15468/dl.ursqgp
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyraja aleutica (Gilbert, 1896)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038958-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3805384_d4
title: Additional file 4: of Translational contributions to tissue specificity in rhythmic and constitutive gene expression

description: Rhythmicity parameters in kidney datasets. This file contains the outcome of the transcriptome-wide rhythmicity analyses on the kidney datasets (related to Fig.Â 3a). (XLSX 163Â kb)
DOI: 10.6084/m9.figshare.c.3805384_d5
title: Additional file 5: of Translational contributions to tissue specificity in rhythmic and constitutive gene expression

description: Rhythmicity parameters of 178 common rhythmic genes. This file contains the outcome of the rhythmicity analyses in kidney and liver for the 178 commonly rhythmic genes (RNA and RPF in kidney and liver; related to Fig.Â 3c). (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3805384_d7
title: Additional file 7: of Translational contributions to tissue specificity in rhythmic and constitutive gene expression

description: Expression plots for kidney and liver for the 178 common rhythmic genes of Fig.Â 3c. (ZIP 3338.28 kb)
DOI: 10.6084/m9.figshare.c.3805498_d1.v1
title: MOESM1 of Differential protein expression in chicken macrophages and heterophils in vivo following infection with Salmonella Enteritidis

description: Additional file 1. List of primers used in quantitative RT PCR in the study.
DOI: 10.6084/m9.figshare.c.3805498_d1
title: MOESM1 of Differential protein expression in chicken macrophages and heterophils in vivo following infection with Salmonella Enteritidis

description: Additional file 1. List of primers used in quantitative RT PCR in the study.