cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id412016.2
title: StrainInfo SI-ID 412016.2

description: StrainInfo dataset 412016 about a strain of Acinetobacter refrigeratoris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412024.2
title: StrainInfo SI-ID 412024.2

description: StrainInfo dataset 412024 about a strain of Thalassotalea agariperforans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412031.2
title: StrainInfo SI-ID 412031.2

description: StrainInfo dataset 412031 about a strain of Acinetobacter lactucae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412034.2
title: StrainInfo SI-ID 412034.2

description: StrainInfo dataset 412034 about a strain of Kaistella daneshvariae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412050.2
title: StrainInfo SI-ID 412050.2

description: StrainInfo dataset 412050 about a strain of Hydrogenophaga bisanensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412083.2
title: StrainInfo SI-ID 412083.2

description: StrainInfo dataset 412083 about a strain of Pseudomonas arcuscaelestis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412085.2
title: StrainInfo SI-ID 412085.2

description: StrainInfo dataset 412085 about a strain of Cellulophaga geojensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412097.2
title: StrainInfo SI-ID 412097.2

description: StrainInfo dataset 412097 about a strain of Spiractinospora alimapuensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412099.2
title: StrainInfo SI-ID 412099.2

description: StrainInfo dataset 412099 about a strain of Corynebacterium pseudopelargi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41211.2
title: StrainInfo SI-ID 41211.2

description: StrainInfo dataset 41211 about a strain of Rhodococcus marinonascens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412113.2
title: StrainInfo SI-ID 412113.2

description: StrainInfo dataset 412113 about a strain of Oceanisphaera arctica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412125.2
title: StrainInfo SI-ID 412125.2

description: StrainInfo dataset 412125 about a strain of Pseudofulvibacter geojedonensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.h74gnp
title: Occurrence Download

description: A dataset containing 2091 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stemphylium vesicarium (Wallr.) E.G.Simmons)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2091 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086673-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id412138.2
title: StrainInfo SI-ID 412138.2

description: StrainInfo dataset 412138 about a strain of Tropicimonas aquimaris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412142.2
title: StrainInfo SI-ID 412142.2

description: StrainInfo dataset 412142 about a strain of Shewanella fodinae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412161.2
title: StrainInfo SI-ID 412161.2

description: StrainInfo dataset 412161 about a strain of Caballeronia catudaia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412177.2
title: StrainInfo SI-ID 412177.2

description: StrainInfo dataset 412177 about a strain of Sporosarcina. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412179.2
title: StrainInfo SI-ID 412179.2

description: StrainInfo dataset 412179 about a strain of Winogradskyella costae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.qjhbdv
title: Occurrence Download

description: A dataset containing 584 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rosa acicularis Lindl.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 584 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086675-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id412185.2
title: StrainInfo SI-ID 412185.2

description: StrainInfo dataset 412185 about a strain of Acinetobacter portensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412203.2
title: StrainInfo SI-ID 412203.2

description: StrainInfo dataset 412203 about a strain of Gardnerella piotii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412210.2
title: StrainInfo SI-ID 412210.2

description: StrainInfo dataset 412210 about a strain of Veillonella nakazawae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412212.2
title: StrainInfo SI-ID 412212.2

description: StrainInfo dataset 412212 about a strain of Acinetobacter proteolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41222.2
title: StrainInfo SI-ID 41222.2

description: StrainInfo dataset 41222 about a strain of Natronomonas pharaonis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412221.2
title: StrainInfo SI-ID 412221.2

description: StrainInfo dataset 412221 about a strain of Bacillus swezeyi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412229.2
title: StrainInfo SI-ID 412229.2

description: StrainInfo dataset 412229 about a strain of Listeria cossartiae subsp. cossartiae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41223.2
title: StrainInfo SI-ID 41223.2

description: StrainInfo dataset 41223 about a strain of Synechocystis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412246.2
title: StrainInfo SI-ID 412246.2

description: StrainInfo dataset 412246 about a strain of Muricauda beolgyonensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id41225.2
title: StrainInfo SI-ID 41225.2

description: StrainInfo dataset 41225 about a strain of Streptomyces kunmingensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id412253.2
title: StrainInfo SI-ID 412253.2

description: StrainInfo dataset 412253 about a strain of Clostridium punense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.u62ax5
title: Occurrence Download

description: A dataset containing 4029 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Linaria genistifolia (L.) Mill.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4029 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086674-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/qjhyi3
title: Plangebied brug en kademuur Nieuwediep te Appingedam
title: gemeente Eemsdelta. Een archeologische opgraving (variant archeologische begeleiding)

description: &lt;p&gt;
Vanwege planaanpassing was het alleen nodig om de werkzaamheden voor het bruggenhoofd archeologisch te begeleiden. Daarbij zijn tot op de ontgravingsdiepte recent geroerde grond en funderingsresten van de brug uit het einde van de 20e eeuw aangetroffen. Op een dieper niveau zijn hier nog wel intacte archeologische resten te verwachten. Langs de kademuur heeft geen archeologisch onderzoek plaatsgevonden en blijft de archeologische verwachting uit het vooronderzoek (Van Hoof, 2024a) ongewijzigd.
&lt;/p&gt;
DOI: 10.17026/ar/swp3cu
title: Provincies Limburg en Noord-Brabant Archeologisch onderzoek:
title: oppervlaktekarteringen na plagwerken in verschillende projectgebieden
title: RAAP Rapport 2942

description: Conclusies onderzoek Stiphoutse bossen
• In de deelgebieden 1, 2, 4 en 5 werden geen vondsten aangetroffen. In de deelgebieden 1, 3 en
5 liggen geen vindplaatsen. In deelgebied 2 bestaat de bodem in ieder geval in een deel van het
gebied uit stuifzand, waardoor het dekzand is afgedekt. Onder het stuifzand, in de top van het
dekzand, kunnen wel vindplaatsen aanwezig zijn die nu onopgemerkt zijn gebleven.
• In de deelgebieden 3 en 6 werd telkens één vondst aangetroffen. De vondsten worden in de
Steentijd gedateerd. Het is onduidelijk of het om losse vondsten gaat, of dat toch sprake kan zijn
van een concentratie. Op beide locaties ligt voornamelijk dekzand aan het oppervlak, al zijn met
name de hoge koppen in deelgebied 6 soms met een dunne laag stuifzand afgedekt.

Aanbevelingen
De oppervlaktekartering heeft twee vondsten opgeleverd. Hoewel de aanwezigheid van een
kampement uit de Steentijd niet helemaal kan worden uitgesloten, is de kans daarop wel klein.
Het is echter niet uit te sluiten dat meer archeologische resten zich op een dieper niveau
bevinden. Zou dit het geval zijn, dan is de vindplaats pas net geraakt: het verdichten van de
oppervlaktekartering heeft immers niet meer vondsten opgeleverd.
Derhalve worden voor alle gebieden, inclusief de plekken met de vondsten, geen aanbevelingen
gedaan.
DOI: 10.5522/04/31346173
title: <b>TDP-43 Degradome Foundation Atlas</b>

description: This open-access repository presents the <b>TDP-43 Degradome Foundation Atlas</b>, a high-resolution, fully annotated dataset of proteolytic TDP-43 fragments with complete amino acid sequences and detailed biochemical metadata.TDP-43 is a central molecular driver of amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD), with cytoplasmic aggregation and C- and N-terminal fragmentation representing pathological hallmarks of disease. The Atlas captures TDP-43 as a dynamic ensemble of peptide fragments generated through physiological turnover, stress-related processing, and disease-associated cleavage. Version 1 includes the wild-type protein and can be expanded to selected disease-relevant variants. This provides a structured peptide-level framework for mechanistic and translational research on TDP-43.This dataset is suitable for classical biomarker discovery as well as for computational and AI-driven approaches in neurodegeneration. The structured, labelled format makes it particularly valuable for:Training supervised models to detect or predict proteolytic cleavage sitesFeature extraction from intrinsically disordered and RNA-binding protein sequencesModelling relationships between fragmentation, phase separation, and aggregationClustering fragment profiles by mutation or disease contextIntegrating with transcriptomic, proteomic, or immunological datasets for multimodal analyses<br><br>Dataset Features:Systematically enumerated and annotated TDP-43 proteolytic fragmentsDetailed biochemical and biophysical peptide descriptorsTab-delimited ASCII / CSV format compatible with Python, R, SAS, and ML frameworksFully reproducible Python workflow for regeneration and expansionDesigned for iterative updates as new TDP-43 mutations and cleavage sites are identifiedThe dataset was generated using a transparent, reproducible computational pipeline based on open-source tools. All scripts are provided and documented, enabling full reproducibility and adaptation to future research needs.This Atlas is particularly relevant for researchers in neurodegeneration, proteomics, RNA biology, bioinformatics, neuroinflammation, and artificial intelligence who are developing tools to understand, predict, and therapeutically target TDP-43 fragmentation and aggregation pathways in human disease.
DOI: 10.5522/04/31346173.v1
title: <b>TDP-43 Degradome Foundation Atlas</b>

description: This open-access repository presents the <b>TDP-43 Degradome Foundation Atlas</b>, a high-resolution, fully annotated dataset of proteolytic TDP-43 fragments with complete amino acid sequences and detailed biochemical metadata.TDP-43 is a central molecular driver of amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD), with cytoplasmic aggregation and C- and N-terminal fragmentation representing pathological hallmarks of disease. The Atlas captures TDP-43 as a dynamic ensemble of peptide fragments generated through physiological turnover, stress-related processing, and disease-associated cleavage. Version 1 includes the wild-type protein and can be expanded to selected disease-relevant variants. This provides a structured peptide-level framework for mechanistic and translational research on TDP-43.This dataset is suitable for classical biomarker discovery as well as for computational and AI-driven approaches in neurodegeneration. The structured, labelled format makes it particularly valuable for:Training supervised models to detect or predict proteolytic cleavage sitesFeature extraction from intrinsically disordered and RNA-binding protein sequencesModelling relationships between fragmentation, phase separation, and aggregationClustering fragment profiles by mutation or disease contextIntegrating with transcriptomic, proteomic, or immunological datasets for multimodal analyses<br><br>Dataset Features:Systematically enumerated and annotated TDP-43 proteolytic fragmentsDetailed biochemical and biophysical peptide descriptorsTab-delimited ASCII / CSV format compatible with Python, R, SAS, and ML frameworksFully reproducible Python workflow for regeneration and expansionDesigned for iterative updates as new TDP-43 mutations and cleavage sites are identifiedThe dataset was generated using a transparent, reproducible computational pipeline based on open-source tools. All scripts are provided and documented, enabling full reproducibility and adaptation to future research needs.This Atlas is particularly relevant for researchers in neurodegeneration, proteomics, RNA biology, bioinformatics, neuroinflammation, and artificial intelligence who are developing tools to understand, predict, and therapeutically target TDP-43 fragmentation and aggregation pathways in human disease.
DOI: 10.5281/zenodo.18454877
title: Flipper dendrimers: open data

description: Original data underlying the publication. Synthesis procedures and spectroscopic data; fluorescence spectroscopy data; FLIM images
DOI: 10.5281/zenodo.18454876
title: Flipper dendrimers: open data

description: Original data underlying the publication. Synthesis procedures and spectroscopic data; fluorescence spectroscopy data; FLIM images
DOI: 10.15468/dl.mwg5ac
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oscularia deltoides",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 61 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021661-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17870/bathspa.31343320.v1
title: Viola Concerto in D Minor, Berk 785, mvt 2

description: Berkley, California
DOI: 10.15468/dl.nena62
title: Occurrence Download

description: A dataset containing 1633306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-20 -38,55 -38,55 38,-20 38,-20 -38))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Galliformes"
 ]
}

 The dataset includes 1633306 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021638-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21954/ou.rd.29383073
title: Metagenomes associated with the publication Ensemble Binning Approach to Identify Functional Diversity in Cleanroom Environments

description: Abstract for data:<br>This study involved the generation of 26 medium and high-quality metagenome-assembled genomes (MAGs) from published metagenomic datasets. These MAGs originated from NASA cleanrooms, specifically the Jet Propulsion Laboratory (JPL) and Kennedy Space Center's Payload Hazardous Servicing Facility (KSC-PHSF).<br>The original sequence data for these MAGs were derived from NCBI Genbank BioProjects PRJNA668809 PRJNA681008 and PRJNA327691. The respective original publications contributing these datasets include Wood et al., 2021, Highlander et al., 2023, and Bashir et al., 2016. All MAGs generated and described in this study are submitted under BioProject PRJEB90846.<br>The MAGs were assembled using Megahit and binned via an ensemble approach integrating MaxBin2, MetaBAT2, and CONCOCT, followed by refinement with DasTool and dRep. Quality assessment was performed using CheckM, with completeness scores ranging from 65.62% to 99.64% and contamination scores from 0.00% to 6.75%. Each MAG is derived from specific cleanroom metagenome samples, identified by their SRA accession (e.g., SRR13152093 for JPL 2018 samples, SRR393690 for KSC 2007 samples). Geographic coordinates for the sampling locations are 34.2013° N, 118.1714° W for JPL and 28.5744° N, 80.6520° W for KSC. The assemblies are characterized as "Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs", reflecting their high or medium quality according to MIMAG standards.<br>Abstract for the paper:<br>Cleanroom environments, crucial for spacecraft assembly, are subject to stringent sterilisation protocols to minimise microbial contamination. However, tolerant microbes can persist and pose a potential risk for planetary protection. This study employs an ensemble binning approach, integrating multiple metagenome binning programs, to analyse published metagenomic datasets generated from NASA cleanrooms to investigate functional diversity within cleanrooms. Twenty-six medium and high quality, non-redundant metagenome-assembled genomes (MAGs) spanning six bacterial phyla were generated. Functional analysis of these MAGs identified potential metabolic pathways for the degradation of commonly used cleaning agents, suggesting that these compounds could serve as carbon sources. Furthermore, genomic analyses identified diverse physiological tolerances, with many MAGs possessing polyextremophilic traits, including resistance to high salinity , temperature, and alkalinity. Growth Rate Index analysis also suggested some MAGs were actively replicating within the cleanroom environments. This study demonstrates the power of ensemble binning in revealing the functional diversity and adaptive strategies of cleanroom microbiomes and provides critical insights for refining planetary protection protocols.<br><br>