cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3dm845
title: Occurrence Download

description: A dataset containing 1332 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fraxinus lanuginosa Koidz.",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1332 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005606-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shcevy
title: Occurrence Download

description: A dataset containing 46354 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hordeum vulgare L.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 46354 records from 325 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002386-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.95r6d6
title: Occurrence Download

description: A dataset containing 4982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cajanus cajan (L.) Huth)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 4982 records from 299 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002387-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ag27h
title: Occurrence Download

description: A dataset containing 7511 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anethum graveolens L.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7511 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002361-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrh5dn
title: Occurrence Download

description: A dataset containing 1136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cajanus scarabaeoides (L.) Thouars)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 1136 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002389-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxrd4c
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Epidendrum durum Lindl."
 ]
}

 The dataset includes 239 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002388-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdz4uz
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hieracium glomeratum Fr.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002362-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jwvmt
title: Occurrence Download

description: A dataset containing 70445 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelophylax lessonae (Camerano, 1882)",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 70445 records from 591 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002378-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cuncbz
title: Occurrence Download

description: A dataset containing 6560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cakile edentula (Bigelow) Hook.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 6560 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002391-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ngyrk
title: Occurrence Download

description: A dataset containing 2156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xylosandrus germanus C.H.Hoffmann, 1941, Xylotrechus antilope (Schönherr, 1817), Xylotrechus stebbingi Gahan, 1906, Xylotrechus stebbingi Gahan, 1906)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 2156 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256928-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-183931
title: Istoriya Yevangel'sko-Baptistskogo Dvizhenni v Ukraine = [History of the Evangelical Baptist movement in Ukraine], 1998

description: [description english/roman)] S.I. Golovashchenko, compiler. Istoriya Yevangel'sko-Baptistskogo Dvizhenni v Ukraine: materialy i dokumenty = [History of the Evangelical Baptist movement in Ukraine: materials and documents]. Odessa, Ukraine: Bogomysliye [Thoughts of God], 1998.
DOI: 10.15468/dl.nkw59f
title: Occurrence Download

description: A dataset containing 4163789 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "SpeciesKey is one of (Aegilops tauschii Coss., Agrostis mertensii Trin., Alopecurus magellanicus Lam., Austrostipa bigeniculata (Hughes) S.W.L.Jacobs & J.Everett, Brachyelytrum aristosum (Michx.) Trel., Branner & Coville, Brachypodium distachyon (L.) P.Beauv., Brachypodium phoenicoides (L.) Roem. & Schult., Brachypodium pinnatum (L.) P.Beauv., Brachypodium sylvaticum (Huds.) P.Beauv., Bromus danthoniae Trin., Calamagrostis arenaria (L.) Roth, Festuca abyssinica A.Rich., Festuca hystrix Boiss., Holcus lanatus L., Hordeum jubatum L., Koeleria macrantha (Ledeb.) Schult., Lolium multiflorum Lam., Lolium perenne L., Lygeum spartum Loefl. ex L., Melica imperfecta Trin., Melica nutans L., Melica transsilvanica Schur, Nardus stricta L., Nassella leucotricha (Trin. & Rupr.) R.W.Pohl, Nassella hyalina (Nees) Barkworth, Nassella pubiflora (Trin. & Rupr.) É.Desv., Nassella tenuis (Phil.) Barkworth, Nassella tenuissima (Trin.) Barkworth, Oloptum miliaceum (L.) Röser & Hamasha, Phleum pratense L., Poa alpina L., Poa bulbosa L., Poa glauca Vahl, Poa lanuginosa Poir., Stipa capillata L., Stipa lagascae Roem. & Schult., Trisetum flavescens (L.) P.Beauv., Trisetum spicatum (L.) K.Richt., Triticum turgidum L.)"
 ]
}

 The dataset includes 4163789 records from 4018 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002057-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6p4e4x
title: Occurrence Download

description: A dataset containing 51514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Image",
 "TaxonKey is Ixodida"
 ]
}

 The dataset includes 51514 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059014-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30190390
title: Positive selection analysis

description: Many butterfly and moth larvae have evolved a wide range of adaptations to feed on plants that produce toxic secondary metabolites. <i>Crotalaria </i>species are mostly known for containing Pyrrolizidine Alkaloids (PAs) that produce harmful effects on humans, wildlife and livestock. However, numerous tiger moths, including the Bella moth (<i>Utetheisa ornatrix</i>), can metabolize, sequester and use PAs for predator defense by both caterpillars and adults. Here, we used male Bella moth caterpillars as model systems to investigate adaptations to PAs through an integrative morphological, genetic and evolutionary framework. We used micro-CT scanning to describe the morphology of organs associated with secondary metabolite metabolism and used qPCR to quantify differences in detoxification gene expression in these organs by comparing caterpillars fed on a PA and PA-devoid diet. Furthermore, we performed positive selection analyses on two PA detoxification genes across twenty-eight tiger moth species to determine if they have undergone adaptative evolution in response to their PA diet. Our results characterized the morphology and spatial organization of the fat body, gut, integument, Malpighian tubules and testes and revealed that detoxification gene expression varied across organs and diets. In particular, the mRNA levels of <i>UGT</i> and <i>SOD2</i> differed significantly among diets. Additionally, we identified specific lineages and amino acid residues under positive selection. Collectively, these findings provide new insights into the morphological specialization of organs, the diet-dependent regulation of detoxification genes and the evolutionary pressures shaping adaptations to secondary metabolites.
DOI: 10.6084/m9.figshare.30190390.v1
title: Positive selection analysis

description: Many butterfly and moth larvae have evolved a wide range of adaptations to feed on plants that produce toxic secondary metabolites. <i>Crotalaria </i>species are mostly known for containing Pyrrolizidine Alkaloids (PAs) that produce harmful effects on humans, wildlife and livestock. However, numerous tiger moths, including the Bella moth (<i>Utetheisa ornatrix</i>), can metabolize, sequester and use PAs for predator defense by both caterpillars and adults. Here, we used male Bella moth caterpillars as model systems to investigate adaptations to PAs through an integrative morphological, genetic and evolutionary framework. We used micro-CT scanning to describe the morphology of organs associated with secondary metabolite metabolism and used qPCR to quantify differences in detoxification gene expression in these organs by comparing caterpillars fed on a PA and PA-devoid diet. Furthermore, we performed positive selection analyses on two PA detoxification genes across twenty-eight tiger moth species to determine if they have undergone adaptative evolution in response to their PA diet. Our results characterized the morphology and spatial organization of the fat body, gut, integument, Malpighian tubules and testes and revealed that detoxification gene expression varied across organs and diets. In particular, the mRNA levels of <i>UGT</i> and <i>SOD2</i> differed significantly among diets. Additionally, we identified specific lineages and amino acid residues under positive selection. Collectively, these findings provide new insights into the morphological specialization of organs, the diet-dependent regulation of detoxification genes and the evolutionary pressures shaping adaptations to secondary metabolites.
DOI: 10.5281/zenodo.15178510
title: Archive of US EPA Multimedia Monitoring Database (MMDB) V1.1

description: This provides an archive of the U.S. EPA's Multimedia Monitoring Database (MMDB) Version 1.1 (March 2024). The database tables are provided in SQL and CSV form. Raw data tables (data as obtained directly from the original data source as described in the Data Source table), are not included due to size limitations. These data may be available at the following link subject to EPA resources: https://doi.org/10.23645/epacomptox.16674298.v5

In the future, MMDB 1.1 harmonized data may be available (subject to EPA resources) via API at https://api-ccte.epa.gov/docs/exposure.html.  

Further information on MMDB can be found in:


Isaacs KK, Wall JT, Williams AR, Hobbie KA, Sobus JR, Ulrich E, Lyons D, Dionisio KL, Williams AJ, Grulke C, Foster CA, McCoy J, Bevington C (2022). “A harmonized chemical monitoring database for support of exposure assessments.” Scientific Data, 9(1), 314.

Disclaimer

The United States Environmental Protection Agency through its Office of Research and Development funded and collaborated in the research and development of this database, in part under Contract EP-C-14-001 to ICF International. The data included herein do not represent and should not be construed to represent any Agency determination or policy.
DOI: 10.5281/zenodo.15178511
title: Archive of US EPA Multimedia Monitoring Database (MMDB) V1.1

description: This provides an archive of the U.S. EPA's Multimedia Monitoring Database (MMDB) Version 1.1 (March 2024). The database tables are provided in SQL and CSV form. Raw data tables (data as obtained directly from the original data source as described in the Data Source table), are not included due to size limitations. These data may be available at the following link subject to EPA resources: https://doi.org/10.23645/epacomptox.16674298.v5

In the future, MMDB 1.1 harmonized data may be available (subject to EPA resources) via API at https://api-ccte.epa.gov/docs/exposure.html.  

Further information on MMDB can be found in:


Isaacs KK, Wall JT, Williams AR, Hobbie KA, Sobus JR, Ulrich E, Lyons D, Dionisio KL, Williams AJ, Grulke C, Foster CA, McCoy J, Bevington C (2022). “A harmonized chemical monitoring database for support of exposure assessments.” Scientific Data, 9(1), 314.

Disclaimer

The United States Environmental Protection Agency through its Office of Research and Development funded and collaborated in the research and development of this database, in part under Contract EP-C-14-001 to ICF International. The data included herein do not represent and should not be construed to represent any Agency determination or policy.
DOI: 10.15468/dl.vbgmv6
title: Occurrence Download

description: A dataset containing 28850 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Opuntia stricta (Haw.) Haw.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 28850 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011776-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1074629.10fu
title: SH1074629.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1074634.10fu
title: SH1074634.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1074636.10fu
title: SH1074636.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1074637.10fu
title: SH1074637.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1074638.10fu
title: SH1074638.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1074639.10fu
title: SH1074639.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.