cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12027843.v1
title: Drivers of floristic variation in biogeographic transitions: insights from the ecotone between the largest biogeographic domains of South America

description: ABSTRACT Ecological transitions usually represent vulnerable ecosystems and high biodiversity. Investigating their drivers is important from both biogeographic and conservationist perspectives. One of these transitions is situated between the two largest biogeographic domains of South America - the Amazon and the Cerrado. We evaluated variation in tree floristic composition throughout this transition and assessed which factors explain this variation. We used 17,240 records of occurrences of 2,530 tree species from the NeotropTree database. We investigated variation in floristic composition using UPGMA cluster analysis with bootstrap resampling and NMDS ordination, and modeled the distribution of species in relation to environmental and spatial predictors by means of transformation-based Redundancy Canonical Analysis (tb-RDA) and variance partitioning. We found four general floristic groups: 1) flooded forests; 2) white sand dwarf-forests; 3) savannic and dwarf forests; and 4) non-flooded forest types. Floristic variation along the transition was influenced by the environment, especially variables related to fire and soil moisture, and by space, especially variables acting on broader scales. Correspondence between the environmental heterogeneity found throughout the transition and our results demonstrates once again the importance of conserving biogeographical transition zones in general, and the most comprehensive of South America in particular.
DOI: 10.6084/m9.figshare.12027831
title: PERFORMANCE ANALYSIS OF WEB-BASED RELATIVE AND PRECISE POINT POSITIONING TECHNIQUES WITH DIFFERENT SATELLITE VISIBILITY CONDITIONS

description: Abstract: The Global Navigation Satellite System (GNSS) is used for precise positioning applications, such as surveying and geodesy. The aim of the present work is to evaluate the effectiveness of web-based relative positioning (RP) and precise point positioning (PPP) GNSS post-processing services using measurements of different satellite visibility obstacles. Within this framework, static GNSS observations were conducted at three control benchmarks selected taking the impact of natural and human-made obstacles on satellite signals into consideration. 3 hours of static GNSS observations in Istanbul, Turkey were repeatedly obtained from three control BMs over six days and were evaluated through two RP (AUSPOS, OPUS) and three PPP (CSRS-PPP, Magic-PPP, GAPS-PPP) web-based GNSS post-processing services. The 6-day average of the three control benchmark coordinates computed using the Bernese GPS software v5.0, and were accepted as true results. They were compared to the local coordinates acquired through the RP and PPP web-based GNSS post-processing services. The different satellite visibility conditions were found to have significant effects on the GNSS point positioning solutions. We also found that web-based GNSS post-processing services provide easy and effective solutions for geodetic positioning applications.
DOI: 10.6084/m9.figshare.12027837.v1
title: Fast and Ecological Liquid-Liquid Separation Method for Preparing Quinones Enriched Extract from Nigella sativa Oil

description: A fast, inexpensive, and ecological method based on liquid-liquid extraction principle has been developed for preparation of extract with high content of Nigella sativa (N. sativa) quinones. The gas chromatography-mass spectrometry (GC-MS) analysis showed that oil extraction using 70% ethanol for 6 h yielded extract containing 50% of thymoquinone (TQ) and 13% of thymohydroquinone (THQ).
DOI: 10.6084/m9.figshare.12027828
title: Age and growth of two populations of Pugilina cochlidium (Gastropoda: Melongenidae), from Thondi coast-Palk Bay in Tamil Nadu-South East coast of India

description: Abstract Age and growth of two populations of Pugilina cochlidium were studied. to address the lack of basic information on the growth rates and the size at sexual maturity of organism in a commercially harvested area, which will be important in considering the size limits to conserve this resources in future. In the present study the results showed more or less similar growth patterns in the males and females of two populations of Pugilina cochlidium. The age and growth estimation of these two populations of Pugilina cochlidium were completed using several methods and the outcome of one method will act as a check and control over the other using the FISAT 1 software. The values of asymptotic length (Lα) values obtained in the present study using various methods did not vary greatly. Lα values obtained for the first population of Pugilina cochlidium was 95.55 mm for males and 106.05 mm for females and the growth rate (K) for males (0.588 yr-1) and females (0.620 yr-1) was given by k-scan routine in ELEFAN. Similarly, the values of asymptotic length (Lα), obtained for second population of Pugilina cochlidium, was 96.15 mm for males and 106.05 mm for females and the growth rate (K) for males (0.540 yr-1) and females (0.950 yr-1) was given by k-scan routine in ELEFAN.
DOI: 10.6084/m9.figshare.12027831.v1
title: PERFORMANCE ANALYSIS OF WEB-BASED RELATIVE AND PRECISE POINT POSITIONING TECHNIQUES WITH DIFFERENT SATELLITE VISIBILITY CONDITIONS

description: Abstract: The Global Navigation Satellite System (GNSS) is used for precise positioning applications, such as surveying and geodesy. The aim of the present work is to evaluate the effectiveness of web-based relative positioning (RP) and precise point positioning (PPP) GNSS post-processing services using measurements of different satellite visibility obstacles. Within this framework, static GNSS observations were conducted at three control benchmarks selected taking the impact of natural and human-made obstacles on satellite signals into consideration. 3 hours of static GNSS observations in Istanbul, Turkey were repeatedly obtained from three control BMs over six days and were evaluated through two RP (AUSPOS, OPUS) and three PPP (CSRS-PPP, Magic-PPP, GAPS-PPP) web-based GNSS post-processing services. The 6-day average of the three control benchmark coordinates computed using the Bernese GPS software v5.0, and were accepted as true results. They were compared to the local coordinates acquired through the RP and PPP web-based GNSS post-processing services. The different satellite visibility conditions were found to have significant effects on the GNSS point positioning solutions. We also found that web-based GNSS post-processing services provide easy and effective solutions for geodetic positioning applications.
DOI: 10.6084/m9.figshare.12027828.v1
title: Age and growth of two populations of Pugilina cochlidium (Gastropoda: Melongenidae), from Thondi coast-Palk Bay in Tamil Nadu-South East coast of India

description: Abstract Age and growth of two populations of Pugilina cochlidium were studied. to address the lack of basic information on the growth rates and the size at sexual maturity of organism in a commercially harvested area, which will be important in considering the size limits to conserve this resources in future. In the present study the results showed more or less similar growth patterns in the males and females of two populations of Pugilina cochlidium. The age and growth estimation of these two populations of Pugilina cochlidium were completed using several methods and the outcome of one method will act as a check and control over the other using the FISAT 1 software. The values of asymptotic length (Lα) values obtained in the present study using various methods did not vary greatly. Lα values obtained for the first population of Pugilina cochlidium was 95.55 mm for males and 106.05 mm for females and the growth rate (K) for males (0.588 yr-1) and females (0.620 yr-1) was given by k-scan routine in ELEFAN. Similarly, the values of asymptotic length (Lα), obtained for second population of Pugilina cochlidium, was 96.15 mm for males and 106.05 mm for females and the growth rate (K) for males (0.540 yr-1) and females (0.950 yr-1) was given by k-scan routine in ELEFAN.
DOI: 10.6084/m9.figshare.12027822
title: Riparian forest fragments in rice fields under different management: differences on hymenopteran parasitoids diversity

description: Abstract Hymenopteran parasitoids are important biological control agents in agroecosystems, and their diversity can be increased with habitat heterogeneity. Thus, the purpose of the study is to evaluate the influence of distance of rice-growing areas from natural fragment, type of crop management (organic and conventional) and crop stages (vegetative and reproductive stages) on parasitoids family diversity. The work took place in two irrigated rice crops, one with organic management (O.M.) and another one with conventional management (C.M.), in the municipality of Nova Santa Rita, RS, Brazil, during the 2013/2014 and 2014/2015 seasons. The parasitoids were collected with Malaise trap arranged at different distances in relation to the native vegetation surrounding the rice crop in both places. Specimens were collected twice a month from seeding until the rice harvest. Average abundance between management, distances and rice development were compared. The most abundant families were Platygastridae, Mymaridae, Encyrtidae, Eulophidae and Trichogrammatidae. Parasitoid average abundance was significantly higher on OM only in the second season. There was a negative correlation between distance from native vegetation and parasitoid abundance in C.M. areas. There were differences in the composition of the parasitoid assembly between the phenological stages of rice.
DOI: 10.6084/m9.figshare.12027822.v1
title: Riparian forest fragments in rice fields under different management: differences on hymenopteran parasitoids diversity

description: Abstract Hymenopteran parasitoids are important biological control agents in agroecosystems, and their diversity can be increased with habitat heterogeneity. Thus, the purpose of the study is to evaluate the influence of distance of rice-growing areas from natural fragment, type of crop management (organic and conventional) and crop stages (vegetative and reproductive stages) on parasitoids family diversity. The work took place in two irrigated rice crops, one with organic management (O.M.) and another one with conventional management (C.M.), in the municipality of Nova Santa Rita, RS, Brazil, during the 2013/2014 and 2014/2015 seasons. The parasitoids were collected with Malaise trap arranged at different distances in relation to the native vegetation surrounding the rice crop in both places. Specimens were collected twice a month from seeding until the rice harvest. Average abundance between management, distances and rice development were compared. The most abundant families were Platygastridae, Mymaridae, Encyrtidae, Eulophidae and Trichogrammatidae. Parasitoid average abundance was significantly higher on OM only in the second season. There was a negative correlation between distance from native vegetation and parasitoid abundance in C.M. areas. There were differences in the composition of the parasitoid assembly between the phenological stages of rice.
DOI: 10.6084/m9.figshare.12027810
title: Acute spontaneous suppurative thyroiditis caused by Eikenella corrodens presented with thyrotoxicosis

description: ABSTRACT Acute suppurative thyroiditis is a very rare and life-threatening endocrine emergency. Thyrotoxicosis is a rare condition accompanying acute suppurative thyroiditis. While the majority of the cases in the literature are caused by different reasons, spontaneous development is very rare. We present a patient with acute suppurative thyroiditis who presented to our clinic with thyrotoxic findings, and we compared the case to the literature. A 31-year-old male patient was admitted to our clinic with a complaint of progressive neck pain, swelling and redness on midline neck, fever, and palpitations. On physical examination, swelling, redness and tenderness were detected on the neck region that was consistent with the thyroid location. He presented with tremor on the hands, tachycardia and agitation. Thyroid function tests were compatible with thyrotoxicosis, but there were findings supporting the presence of infection in biochemistry tests. On his radiological evaluations, a heterogeneous lesion divided with small septs was observed, with consolidation areas in the left thyroid lobe. In fine needle aspiration biopsy, 2mL of purulent fluid could be aspirated due to the presence of small, separated consolidation areas. He initiated on antibiotic therapy, propranolol, steroid and symptomatic treatment. Eikenella corrodens was detected on the culture antibiogram. Antibiotic therapy was continued for 14 days due to less symptoms and better biochemical values. After treatment, the patient had normal thyroid function, had relief of fever and redness of the neck, and was followed-up. It should be kept in mind that acute suppurative thyroiditis may develop spontaneously with the findings of thyrotoxicosis, with no risk factors.
DOI: 10.6084/m9.figshare.12027810.v1
title: Acute spontaneous suppurative thyroiditis caused by Eikenella corrodens presented with thyrotoxicosis

description: ABSTRACT Acute suppurative thyroiditis is a very rare and life-threatening endocrine emergency. Thyrotoxicosis is a rare condition accompanying acute suppurative thyroiditis. While the majority of the cases in the literature are caused by different reasons, spontaneous development is very rare. We present a patient with acute suppurative thyroiditis who presented to our clinic with thyrotoxic findings, and we compared the case to the literature. A 31-year-old male patient was admitted to our clinic with a complaint of progressive neck pain, swelling and redness on midline neck, fever, and palpitations. On physical examination, swelling, redness and tenderness were detected on the neck region that was consistent with the thyroid location. He presented with tremor on the hands, tachycardia and agitation. Thyroid function tests were compatible with thyrotoxicosis, but there were findings supporting the presence of infection in biochemistry tests. On his radiological evaluations, a heterogeneous lesion divided with small septs was observed, with consolidation areas in the left thyroid lobe. In fine needle aspiration biopsy, 2mL of purulent fluid could be aspirated due to the presence of small, separated consolidation areas. He initiated on antibiotic therapy, propranolol, steroid and symptomatic treatment. Eikenella corrodens was detected on the culture antibiogram. Antibiotic therapy was continued for 14 days due to less symptoms and better biochemical values. After treatment, the patient had normal thyroid function, had relief of fever and redness of the neck, and was followed-up. It should be kept in mind that acute suppurative thyroiditis may develop spontaneously with the findings of thyrotoxicosis, with no risk factors.
DOI: 10.6084/m9.figshare.12027801
title: Potential Slow Release Fertilizers Based on K2MgSiO4 Obtained from Serpentinite

description: In this work, a potassium magnesium silicate mineral based on phase K2MgSiO4 was prepared from serpentinite rock and studied as a potential K and Mg slow-release fertilizer. The material was prepared by impregnation of serpentinite/KOH and calcination at 700 °C to produce K2MgSiO4 phase, olivine and forsterite. The release patterns of K and Mg in the stirred-flow trial and leaching through the soil columns showed that K2MgSiO4-based materials released K on lower rates than KCl and MgSO4.7H2O, however, there was no evidence of Mg release. The extraction with 1 mol L-1 NH4OAc showed a considerable content of Mg and K for K2MgSiO4-based materials, due to exchange of NH4+ and Mg2+. X-ray diffraction (XRD) analysis of materials impregnated with K and calcined showed peaks relative to K2MgSiO4. After leaching, the peaks intensity diminished, supporting that part of K leached. Therefore, the samples showed great potential as slow-release K-fertilizers when compared with KCl source.
DOI: 10.6084/m9.figshare.12027801.v1
title: Potential Slow Release Fertilizers Based on K2MgSiO4 Obtained from Serpentinite

description: In this work, a potassium magnesium silicate mineral based on phase K2MgSiO4 was prepared from serpentinite rock and studied as a potential K and Mg slow-release fertilizer. The material was prepared by impregnation of serpentinite/KOH and calcination at 700 °C to produce K2MgSiO4 phase, olivine and forsterite. The release patterns of K and Mg in the stirred-flow trial and leaching through the soil columns showed that K2MgSiO4-based materials released K on lower rates than KCl and MgSO4.7H2O, however, there was no evidence of Mg release. The extraction with 1 mol L-1 NH4OAc showed a considerable content of Mg and K for K2MgSiO4-based materials, due to exchange of NH4+ and Mg2+. X-ray diffraction (XRD) analysis of materials impregnated with K and calcined showed peaks relative to K2MgSiO4. After leaching, the peaks intensity diminished, supporting that part of K leached. Therefore, the samples showed great potential as slow-release K-fertilizers when compared with KCl source.
DOI: 10.6084/m9.figshare.12027786
title: The protective effect of Ganoderma lucidum on testicular torsion/detorsion-induced ischemia-reperfusion (I/R) injury

description: Abstract Purpose To investigate the protective effect of Ganoderma lucidum on testicular torsion/detorsion (T/D)-induced ischemia-reperfusion (I/R) injury. Methods Thirty male Wistar albino rats were randomly categorized into 3 groups: Group 1: sham, Group 2 ( T/D): 2,5 hours of ischemia and 7 days of reperfusion, Group 3 (T/D+ G. lucidum ): 2,5 hours of ischemia and 7 days of reperfusion and 7 days of 20 mg/kg via gastric gavage G. lucidum polysaccharides per day. Biochemical assays of Malondialdehyde (MDA), superoxide dismutase (SOD), Catalase (CAT), Glutathione (GSH) levels , histopathology and expression levels of VEGF and Bcl-2 with immunohistochemical methods were examined in testicular tissue. Results G. lucidum treatment was found to have prevented the T/D-induced I/R injury by decreasing MDA levels of the testis. SOD, CAT and GSH activities were decreased in group 2, while they were increased in group 3 (p&lt;0.001) and significant improvement in the tube diameter was observed in group 3. Bcl-2-positive germinal cells were lowered in group 3 compared to the group 2. VEGF expression showed an increase in group 2, whereas it decreased in group 3. Conclusion The antioxidant G. lucidum is thought to induce angiogenesis by reducing the apoptotic effect in testicular torsion-detorsion.
DOI: 10.6084/m9.figshare.12027789
title: Ingredients for an exotic dish: health and diet on the agenda of the first Amazonian Medical Congress (Belém, 1939)

description: Abstract The context in which the first Amazonian Medical Congress was organized and held in Belém, Brazil, in August 1939, is presented. Within the tradition of scientific communication of its time, the event brought together some of the region’s medical elites and also had nationally and internationally renowned guest participants, including Josué de Castro and Dante Costa. Taking the printed matter produced by the congress and news stories printed in the local press as its main sources, this study examines the accompanying debates on dietary deficiencies in the Amazon, observing academic and political understandings of the different aspects of the phenomenon for the region.
DOI: 10.6084/m9.figshare.12027783
title: Local effect of simvastatin combined with different osteoconductive biomaterials and collagen sponge on new bone formation in critical defects in rat calvaria

description: Abstract Purpose To evaluate the local effect of simvastatin (SVT) combined with deproteinized bovine bone (DBB) with hydroxyapatite/β-tricalcium phosphate biphasic ceramics (HA/TCP) and with collagen sponge (CS) on bone repair in critical size defects (CSDs) in rat calvaria. Methods Forty-two 5-mm diameter CSDs were made bilaterally in the calvaria of 18 rats. The animals were allocated according to the type of biomaterial and associations used to fill the CSD. After 8 weeks, the animals were euthanized, and their calvaria were evaluated for repaired tissue composition using histologic and histometric analyses. Results In the histometric analysis, the use of SVT showed to increase bone formation in the CSDs when combined with all the bone substitutes tested in this study (p&lt;0.05). Greater bone formation was observed in the groups with SVT compared to the groups without SVT. Conclusions The use of SVT without the need for a vehicle and combined with a commercially available biomaterial may be a cheaper way to potentiate the formation of bone tissue without the need to produce new biomaterials. Therefore, SVT combined with DBB induced significantly greater new bone formation than did the other treatments.
DOI: 10.6084/m9.figshare.12027786.v1
title: The protective effect of Ganoderma lucidum on testicular torsion/detorsion-induced ischemia-reperfusion (I/R) injury

description: Abstract Purpose To investigate the protective effect of Ganoderma lucidum on testicular torsion/detorsion (T/D)-induced ischemia-reperfusion (I/R) injury. Methods Thirty male Wistar albino rats were randomly categorized into 3 groups: Group 1: sham, Group 2 ( T/D): 2,5 hours of ischemia and 7 days of reperfusion, Group 3 (T/D+ G. lucidum ): 2,5 hours of ischemia and 7 days of reperfusion and 7 days of 20 mg/kg via gastric gavage G. lucidum polysaccharides per day. Biochemical assays of Malondialdehyde (MDA), superoxide dismutase (SOD), Catalase (CAT), Glutathione (GSH) levels , histopathology and expression levels of VEGF and Bcl-2 with immunohistochemical methods were examined in testicular tissue. Results G. lucidum treatment was found to have prevented the T/D-induced I/R injury by decreasing MDA levels of the testis. SOD, CAT and GSH activities were decreased in group 2, while they were increased in group 3 (p&lt;0.001) and significant improvement in the tube diameter was observed in group 3. Bcl-2-positive germinal cells were lowered in group 3 compared to the group 2. VEGF expression showed an increase in group 2, whereas it decreased in group 3. Conclusion The antioxidant G. lucidum is thought to induce angiogenesis by reducing the apoptotic effect in testicular torsion-detorsion.
DOI: 10.6084/m9.figshare.12027789.v1
title: Ingredients for an exotic dish: health and diet on the agenda of the first Amazonian Medical Congress (Belém, 1939)

description: Abstract The context in which the first Amazonian Medical Congress was organized and held in Belém, Brazil, in August 1939, is presented. Within the tradition of scientific communication of its time, the event brought together some of the region’s medical elites and also had nationally and internationally renowned guest participants, including Josué de Castro and Dante Costa. Taking the printed matter produced by the congress and news stories printed in the local press as its main sources, this study examines the accompanying debates on dietary deficiencies in the Amazon, observing academic and political understandings of the different aspects of the phenomenon for the region.