cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15125/bath-00743
title: Dataset for Petratou, Spencer, Kelsh and Lister 'The MITF paralog tfec is required in neural crest development for fate specification of the iridophore lineage from a multipotent pigment cell progenitor'

description: The data consist of (1) iridophore counts in WT or tfec mutant embryos at 3 dpf (Fig. 3F); (2) iridophore counts from tfec mutants injected with tfec cDNA construct or uninjected controls (Fig. 3K); (3) iridophore counts from WT embryos injected with various control and tfec-expression plasmids, and uninjected controls (Fig. 3M); (4) melanocyte counts in tfec mutants compared to WT siblings at 30 hpf and 4 dpf (Fig. 4I,L).
description: Full details of the methodology may be found in the associated paper.
description: Further relevant documentation may be found in the following resources.

   Petratou, K., Spencer, S. A., Kelsh, R. N., and Lister, J. A.,  2019.   TheMITFparalogtfecis required in neural crest development for fate specification of the iridophore lineage from a multipotent pigment cell progenitor.         bioRxiv.  Available from: https://doi.org/10.1101/862011.
DOI: 10.15125/bath-00745
title: Dataset for "Service users' experiences of NHS patient medicines helpline services: A qualitative study"

description: The study used semi-structured interviews to explore service users' experiences of using National Health Service (NHS) patient medicines helpline services (PMHS). This dataset comprises data from 40 participants. The study protocol is included in the dataset to provide additional context.
description: The study used semi-structured interviews to explore service users' experiences of using National Health Service (NHS) patient medicines helpline services (PMHS). This dataset comprises data from 40 participants. 

Recruitment was conducted via seven NHS Trusts from different regions within England, which acted as participant identification sites. Data were collected via telephone. 
Prior to their interview, the following background information was collected from participants: Name of NHS Trust contacted, date of PMHS contact, whether they had previously used a PMHS. Patients were also asked whether they were an inpatient or outpatient for their recent period of care, and the number of prescribed medicines they were prescribed at the time of the PMHS contact. Carers were also asked their relationship to the patient who the PMHS contact was regarding. 

Separate interview schedules to explore participants experiences of using a PMHS were developed for patients and carers. The two schedules were broadly similar, although, for ethical reasons, the carer version did not contain questions that would have resulted in them providing personal information about the patient individual that they care for. The aim of the interview with carers was thus to explore whether the PMHS met their needs as a carer seeking information. 

Following their interview, the following background data were collected from each participant: Age, gender, ethnicity, and current occupational status. 

All audio-recorded interviews were transcribed verbatim into separate Microsoft Word documents. Braun and Clarke’s inductive reflexive thematic analysis (TA) was used to analyse this data. Analysis involved the following stages, as outlined by Braun and Clarke: familiarisation with the data, generating initial codes, developing themes, reviewing themes, defining and naming themes, and writing the analysis.  All individual interview transcripts were uploaded into NVivo version 12. NVivo was used for generating initial codes and developing and reviewing themes. The only deviation to the TA stages was that Iterative Categorisation (IC) was used in place of the defining themes stage, for increased transparency and rigour.

For further details, see the study protocol included within the dataset.
description: All individual interview transcripts were uploaded into NVivo version 12.
DOI: 10.13145/bacdive2230.20240510.9
title: Sulfurospirillum multivorans (Scholz-Muramatsu et al. 2002) Luijten et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00736
title: Dataset for "Multi-Enzyme Cellulose Films as Sustainable and Self-Degradable Hydrogen Peroxide Producing Material"

description: This dataset contains data obtained by Enzyme activity measurements (Cellobiohydrolase and Cellobiose dehydrogenase), rheological analysis of cellulose films (uniaxial large deformation studies), H2O2 evolution in films (short term and long term), and adsorption kinetic studies of the enzymes into cellulose films. Moreover, the dataset includes a word document with the microphotographs and figures of the published paper.
description: The obtained data were obtained with different techniques: 

1. Fluorescence microscopy
2. Rheometry analysis
3. Spectrophotometry
4. Chromatography (HPLC)
description: Microsoft office and image visualizing software
DOI: 10.15125/bath-00744
title: Dataset for "Pharmacy professionals' experiences and perceptions of providing NHS patient medicines helpline services: A qualitative study"

description: Transcripts of interviews with thirty-four pharmacy professionals about their experiences and perceptions of providing a National Health Service patient medicines helpline service.
description: An interview schedule was developed for the purpose of interviewing participants regarding their experiences and perceptions of their PMHS, and was informed by the RE-AIM evaluation framework. RE-AIM comprises five dimensions that are considered important for evaluating the impact of healthcare interventions: Reach, Effectiveness, Adoption, Implementation, and Maintenance. We ensured that questions pertaining to each of the five RE-AIM dimensions were included in the schedule. During data collection, the interview schedule served as a flexible guide for interviews, enabling participants to discuss aspects of their PMHS that were important to them. All interviews were audio-recorded. After their interview, the following background data were collected from each participant over the telephone: age, gender, ethnicity, job title, number of years employed as a pharmacy professional, and number of years’ experience of operating or providing a PMHS. All audio-recorded interviews were transcribed verbatim into separate Microsoft Word documents. Framework analysis (FA) was used to analyse the transcribed data.  Analysis involved the standard FA stages, as outlined by Ritchie and Spencer (the developers of FA): familiarisation with the data, coding, developing an analytical framework, indexing, charting, and interpretation. The only deviation to the FA stages was that Iterative Categorisation (IC) was used in place of charting. The choice to use IC was made in order to increase transparency and rigour.
description: Data were analysed using NVivo version 12.
DOI: 10.15125/bath-00752
title: Dataset for "A Novel Neural Network Architecture with Applications to 3D Animation and Interaction in Virtual Reality"

description: This is the dataset for the doctoral thesis "A Novel Neural Network Architecture with Applications to 3D Animation and Interaction in Virtual Reality" by Javier de la Dehesa Cueto-Felgueroso. See the original document for details.

The dataset is structured in three parts. The files `gfnn_code.zip` and `gfnn_data.zip` contain the code and data for the experiments with grid-functioned neural networks discussed in chapter 3 of the thesis. The files `quadruped_code.zip` and `quadruped_data.zip` contain the code and data for the quadruped locomotion experiments and user study discussed in chapter 4. The files `framework_code.zip` and `framework_data.zip` contain the code and data for the human-character interaction framework experiments and user studies discussed in chapter 5. Each pair of files should be decompressed in the same directory, but separate from the other parts. Further details and instructions for each of the parts can be found within the corresponding compressed files.
description: Synthetic evaluation data has been generated programmatically. Quadruped locomotion data has been extracted from the dataset published as part of the article "Mode-Adaptive Neural Networks for Quadruped Motion Control" by Zhang et al. (2018). Gesture recognition data was collected with VR hardware in a custom-made virtual scenario, where the subject was presented with a signal indicating a gesture to perform, which they then did while pressing a button on the hand controller. Sword fighting animation data was motion captured with specialised equipment within the facilities of Ninja Theory, Ltd. User studies data was collected through online forms, filled after each condition of each of the studies.
description: Quadruped locomotion data has been extracted from the dataset published as part of the article "Mode-Adaptive Neural Networks for Quadruped Motion Control" by Zhang et al. (2018). A selection of the original dataset was converted from the original BVH format into CSV and TensorFlow's TfRecord formats.
description: Gesture recognition data was captured with an Oculus Rift kit. Animation data was captured with Vicon Bonita hardware.
description: Synthetic evaluation data is stored in TfRecord format including the input and output values for each of the examples. Quadruped locomotion data is expressed in CSV, including the configuration of the character joints on each frame, and in TfRecord format, encoded as described in the thesis. Gesture recognition data is stored in CSV files where each row contains the position and orientation of both hands and the gesture being performed on each frame. Animation data is stored in CSV files where each row contains the position and orientation of each joint of the skeleton. User studies data is stored in JASP files encoding the answers of each participant to each question in the study.
DOI: 10.13145/bacdive2232.20240510.9
title: Sulfurospirillum cavolei Kodama et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00718
title: Dataset for "High quality hydrogen silsesquioxane encapsulated graphene devices with edge contacts"

description: Datasets underpinning the four figures for "High quality hydrogen silsesquioxane encapsulated graphene devices with edge contacts" in Materials Letters. The primary data files are transmission line measurements for edge contacts and Hall mobilities of devices with and without hydrogen silsesquioxane (HSQ) encapsulation. Also included are a device processing chart and atomic force microscopy (AFM) profiles. Raman data presented in the Supporting Information are also included.
description: Detailed methods can be found in the Experimental section of the associated article.
description: Details of the instrumentation used can be found in the Experimental section of the associated article.

Igor Binary Wave files (.ibw) may be opened with WaveMetrics Igor Pro (https://www.wavemetrics.com/); third party software such as Gwyddion (http://gwyddion.net/), IgorR (from CRAN) and igor (from PyPI) may also be used.
description: Further relevant documentation may be found in the following resources.

   Li, P., Collomb, D., and Bending, S.,  2019.   High quality hydrogen silsesquioxane encapsulated graphene devices with edge contacts.    Materials Letters, 257.   Available from: https://researchportal.bath.ac.uk/en/publications/high-quality-hydrogen-silsesquioxane-encapsulated-graphene-device.
DOI: 10.15125/bath-00751
title: Dataset for "User-testing guidelines to improve the safety of intravenous  medicines administration: a randomised in-situ simulation study"

description: These data describe a randomised in situ simulation experiment to compare the rate of errors made by hospital nurses during the administration of an intravenous medicine when using current or user-tested injectable medicines guidelines. The files in this archive include:

- the study protocol;
- data collection tools;
- the two guidelines compared in the study;
- quantitative data on participant demographics, errors and participant feedback;
- an expert panel's analysis of the severity of the observed errors;
- transcriptions and analysis of debrief interviews with participants.
description: For full details of the methodology, see study protocol included in this archive and included in the associated article.
description: For details of how the dataset has been arranged, see README file included in this archive.
description: Further relevant documentation may be found in the following resources.

   Jones, M. D., McGrogan, A., Raynor, D. K., Watson, M. C., and Franklin, B. D.,  2020.   User-testing guidelines to improve the safety of intravenous medicines administration: a randomised in situ simulation study.    BMJ Quality & Safety, 30(1), 17-26.  Available from: https://doi.org/10.1136/bmjqs-2020-010884.
DOI: 10.5281/zenodo.13778788
title: Accompanying dataset for the paper "An explicit dynamics framework suited to highly non-smooth interface behaviors"

description: Contributions



Author #1 carried out most of the study, performed numerical simulations, and drafted the manuscript

Author #2 helped with implementation and numerical issues

All authors developed the methodology, conceived the study, and participated in its design, coordination, and critical review of the manuscript. All authors read and approved the final manuscript.


Funding sources



We gratefully acknowledge the French National Association for Research and Technology (ANRT, CIFRE grant number 2021/0957).

This work was supported by the "Manufacture Française de Pneumatiques Michelin"


Data structure and information



data                          -- folder for raw data


Peeling3Dv7.dgibi           -- CAST3M input file to produce the mesh (Gibiane language)

Peeling3Dv7.inp             -- input FE data file (ASCII AVS UCD format)

Peeling3Dv7.m               -- main matlab/Octave source file uses the open-source library matlabEF for reading input data and producing the FE required operators, which is available at
https://github.com/dureisse/matlabEF.git and https://hal.science/hal-04647638.



workflows


install.sh                  -- script to reinstall the dependencies

reproduce.sh                -- script for re-running the study




Paper Description

Dynamic systems, and in particular mechanical structures, may be subjected to non-smooth loadings such as impacts or shocks. Moreover, their behavior itself may exhibit more or less non-smooth evolutions, as when fracture occurs. Therefore, robust simulation models are of interest to capture such behaviors. A particular focus is made herein on time-stepping explicit dynamics schemes to allow efficient simulations, and non-smoothness is embedded within the discrete resolution model, so that robust simulations can be obtained, with a minimum number of numerical parameters. The original contributions of this article lie in the way the non-smooth behavior is formulated to be embedded in an explicit dynamics framework. This study focuses on the solver for dynamics with non-smooth interface behavior, rather than on the behavior models themselves. The applications concern non-smooth interface behaviors at macroscopic scale, between displacement jump on the 2D interface surface with no thickness, and interfacial force distributions acting on the bodies apart the interface. The proposed test cases which can serve as benchmarks for simulation codes, concern in a first step contact and perfectly plastic interface behavior (for illustrative purpose, on a 0D example). The last numerical test deals with contact, friction, fracture and adhesion for an extrinsic perfectly brittle interface behavior, to exemplify the feasibility on a full 3D finite element model.
DOI: 10.13145/bacdive2233.20240510.9
title: Cardiobacterium hominis Slotnick and Dougherty 1964

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00746
title: Dataset for Quantifier Elimination and CAD examples in Maple

description: This dataset provides the following:
- 'QE Example Database.mpl': a file that can be read into Maple that loads an interactive database of QE examples, along with functions to build and print them,
- 'CADDatabase.mm': a file that can be read into Maple that loads a table of purely unquantified examples for CAD, 'CADExamples', with no auxillary functions. These examples are of various types, but are compatible with the input semantics of 'CylindricalAlgebraicDecompose' for the package 'QuantifierElimination' for Maple.
- 'TarskiFormulaLaTeXTools.mpl':  a file that can be read into Maple that allows Maple to better format Tarski formulae (type 'TarskiFormula' arising from the package 'QuantifierElimination') for LaTeX when passed into Maple's inbuilt function 'latex'.
- 'Example Database Info.pdf': A pdf documenting reference and origin information about all examples from the databases included.
All formulae or otherwise semi-algebraic sets produced by usage of these files are in 'RationalTarskiFormula' or 'TarskiFormula' type, for compatibility with 'QuantifierElimination'. They are amenable to usage with Maple packages 'RegularChains' or 'SyNRAC', after some conversion.
- 'QuantifierEliminationConversionTools.mpl': a file that can be read into Maple that loads two functions for conversion of Tarski formulae from 'QuantifierElimination' format, 'convertQEtoRC', 'convertQEtoSyNRAC', and 'convertQEtoQEPCAD' which convert to format amenable to 'RegularChains', 'SyNRAC', or 'QEPCAD' respectively. 'QEPCAD' requires bespoke input, so one can write the produced string to a file before redirection into QEPCAD.
More information about each file is in the metadata for each file.
description: The CAD and QE examples contained in the relevant database come from a wide range of sources, documented in the contained pdf. Where appropriate, these may have been reformatted into Maple format, eg. from Mathematica format for the economics examples.

Many of the examples arise from David Wilson's CAD database (reference found in the .pdf), and where appropriate they have been reformatted as the relevant QE problem for the QE database. Otherwise, they may have had some slight reformatting such that they form lists of relations, or sets of polynomials.
description: Maple 2019.0 or newer is sufficient to view the examples. Previous versions of Maple may suffice, although cannot be guaranteed. The examples are all written to be directly compatible for functions contained in the package 'QuantifierElimination' for Maple, to be released. Conversion for usage with Maple packages 'RegularChains' or 'SyNRAC' is available by the included conversion routines.

A version of 'RegularChains' is included with any consumer version of Maple, but the newest version is also available online. 'SyNRAC' is only available online.
DOI: 10.15125/bath-00754
title: Dataset for "Touché: Data-Driven Interactive Sword Fighting in Virtual Reality"

description: This is the data repository for the paper "Touché: Data-Driven Interactive Sword Fighting in Virtual Reality" by Javier Dehesa, Andrew Vidler, Christof Lutteroth and Julian Padget, presented at CHI 2020 conference in Honolulu, HI, USA. See the publication for details.

The archives gesture_recognition_data.zip and gesture_recognition_code.zip contain respectively the data and code for the gesture recognition component. Similarly, the archives animation_data.zip and animation_code.zip contain respectively the data and code for the animation component. Instructions about how to use these are provided within them.

The archive user_studies.zip contains information about our user studies. The file questionnaire_study.jasp and interactive_study.jasp contain the data and analysis of the questionnaire and interactive studies respectively. They can be consulted with the open source tool JASP (https://jasp-stats.org/). The video questionnaire_conditions.mp4 shows the full videos used as the three conditions for the questionnaire study.
description: Gesture recognition data was collected with VR hardware in a custom-made virtual scenario, where the subject was presented with a signal indicating a gesture to perform, which they then did while pressing a button on the hand controller.

Animation data was motion captured with specialised equipment within the facilities of Ninja Theory, Ltd.

User studies data was collected through online forms, filled after each condition of each of the studies.
description: The user studies data was preprocessed for convenience to produce an accessible JASP file. The preprocessing simply translated the raw text of the questions into short identifiers and mapped Likert points (like  "strongly agree/disagree") to numerical values. For this publication, free-text comment data was removed from the dataset for anonymisation purposes.
description: Gesture recognition data was captured with an Oculus Rift kit.

Animimation data was captured with Vicon Bonita hardware.
description: Gesture recognition data is stored in CSV files where each row contains the position and orientation of both hands and the gesture being performed on each frame.

Animation data is stored in CSV files where each row contains the position and orientation of each joint of the skeleton.

User studies data is stored in JASP files encoding the answers of each participant to each question in the study.