cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6041561
title: SGD-SM 2.0

description: To overcome the disadvantages of previous <strong>SGD-SM 1.0</strong>, we develop an improved seamless global daily soil moisture (<strong>SGD-SM 2.0</strong>) dataset for the years 2002-2022. The main improvements and contributions of <strong>SGD-SM 2.0</strong> are listed as follows: <strong>Compared with SGD-SM 1.0 (from 2013 to 2019), the application scope of SGD-SM 2.0 can be enlarged from 2002 to 2022.</strong> <strong>SGD-SM 2.0 assimilates auxiliary precipitation information, to consider the sudden extreme weather condition.</strong> <strong>SGD-SM 2.0 develops an integrated LSTM-CNN to fill the gaps and missing regions in global daily products.</strong> More Descriptions: <strong>This is An improved seamless global daily soil moisture long-term (2002-2022) dataset.</strong> <strong>These daily products include 7115 global soil moisture NetCDF4 files (Both original and reconstructed data), starting from Jun 23, 2002 to Feb 05, 2022.</strong> <strong>Application Codes: https://github.com/qzhang95/SGD-SM</strong> <strong>Homepage: https://qzhang95.github.io</strong> <strong>Processed by Qiang Zhang (qzhang95@dlmu.edu.cn)</strong>
DOI: 10.5281/zenodo.7109776
title: A high spatial resolution dataset for anthropogenic atmospheric mercury emissions in China during 1998-2014

description: This database contains gridded atmospheric mercury emissions in 30 provinces of China by sectors from 1998 to 2014 at the resolution of 1 km×1 km. We distribute atmospheric mercury emissions in four sectors, i.e., agriculture, industry, service industry, and residences, based on China's land use data, enterprise data, road data, and population data. Gridded estimates of the total Hg (THg) and the three species, i.e., gaseous elemental Hg (Hg<sub>0</sub>), gaseous oxidized mercury (Hg<sub>II</sub>), and particulate-bound mercury (Hg<sub>p</sub>), are given separately.
DOI: 10.17188/1280791
title: Materials Data on Na2S by Materials Project

description: Na2S is Fluorite structured and crystallizes in the cubic Fm-3m space group. The structure is three-dimensional. Na1+ is bonded to four equivalent S2- atoms to form a mixture of edge and corner-sharing NaS4 tetrahedra. All Na–S bond lengths are 2.85 Å. S2- is bonded in a body-centered cubic geometry to eight equivalent Na1+ atoms.
DOI: 10.17632/7mbcpywvpr.1
title: Additional files supporting conclusions in manuscript on development of an experimental necrotic enteritis model in turkeys

description: Manuscript title: Developing an experimental necrotic enteritis model in turkeys - the impact of Clostridium perfringens, Eimeria meleagrimitis and host age on frequency of severe intestinal lesions. Authors: Simon P. Hardy1+ (S.P.Hardy@brighton.ac.uk), Sylvie L. Benestad2+ (sylvie.benestad@vetinst.no), Inger Sofie Hamnes2 (inger.hamnes@vetinst.no), Torfinn Moldal2 (torfinn.moldal@vetinst.no), Bruce David3 (robert.bruce.david@nortura.no), John R. Barta4 (jbarta@uoguelph.ca), Jean-Michel Reperant5 (Jean-Michel.REPERANT@anses.fr), Magne Kaldhusdal2 * (magne.kaldhusdal@vetinst.no) Conclusions: This study represents a first and major step forward in the development of in vivo experimental models of necrotic enteritis in turkeys.
DOI: 10.5281/zenodo.3548902
title: The Archaeological Ceramics from Mahurjhari: Vessel Forms by Stratigraphic Layer

description: This spreadsheet contains the quantities of each type of vessel form found in each stratigraphic layer of each excavated trench at Mahurjhari, India. The data is arranged according to the excavated trenches. For each trench, the combined MNI count and number of bases are presented.
DOI: 10.5281/zenodo.7126484
title: Data to support the publication "Impact of agricultural management on soil aggregates and associated organic carbon fractions: Analysis of long-term experiments in Europe"

description: <strong>Raw data:</strong> Experimental plot ids and information, mass distribution of all aggregate fractions after wet sieving, Sand content of each fraction to conduct the sand correction, mass distribution of all fractions after isolating the micro-aggregates held within the macroaggregates, yields per treatment, carbon content per fraction (raw data) <strong>All data per plot: </strong>SOC content, MAOM and POM content of each fraction presented in the fractionation scheme included in the manuscript, together with the mass of the relative fractions.
DOI: 10.6084/m9.figshare.20236881
title: Supplementary Material for: Age-Adjusted Charlson Comorbidity Index Predicts Survival in Endometrial Cancer Patients

description: Objective: Comorbidity scores are increasingly used to reduce potential confounding in oncologic researches. This is of paramount importance in endometrial cancer (EC) since it is characterized by quite indolent behavior. Here, we aim to evaluate the impact of various comorbidities and concurrent medications used on survival outcomes, adopting the age-adjusted Charlson comorbidity index (A-CCI). Design: This is an observational study. Charts of 257 EC patients were retrieved. Methods: We retrospectively evaluated data of patients who underwent surgical treatment for EC. A-CCI was calculated by summing the weighted comorbidities and age of each patient. A binomial value was assigned to different comorbidities and different drugs. Oncologic outcomes were evaluated using Cox proportional hazard models adjusted for age. Results: A-CCI ≥ 3 correlated with more aggressive tumor features (47.6% vs 26.8%, p= 0.001), higher risk of recurrence (29.7% vs 11.6%, p= 0.001), death (20.7% vs 7.1%, p=0.002) and death due to disease (16.6% vs 6.3%, p=0.012). Considering comorbidities and drugs at parsimonious multivariable analysis model: cardiac disease, liver disease, and proton pump inhibitors (PPIs) use were independent predictors of disease-free survival. Cardiac disease, autoimmune disease, and PPIs use were independent predictors of overall survival. Diabetes was the only independent predictor for cause-specific survival. Limitations: The major limitation of the present study is its retrospective nature and the relatively small sample size that limit the possibility to have firm conclusions. Conclusion: Patients with EC are characterized by a high burden of comorbidities. Comorbidities impact directly survival outcomes. Further attention is needed to improve the active management of comorbidities soon after EC treatments. Interventional studies are needed to improve patients’ outcomes.
DOI: 10.6084/m9.figshare.21286245
title: Supplementary Material for: Prevalence of Molecular Alterations in a Swiss Cohort of 512 Colorectal Carcinoma Patients by Targeted Next-Generation Sequencing Analysis in Routine Diagnostics

description: <b><i>Introduction:</i></b> Colorectal carcinoma (CRC) is among the most common carcinomas in women and men. In the advanced stage, patients are treated based on the <i>RAS</i> status. Recent studies indicate that in the future, in addition to <i>KRAS</i> and <i>NRAS</i>, alterations in other genes, such as <i>PIK3CA</i> or <i>TP53</i>, will be considered for therapy. Therefore, it is important to know the mutational landscape of routinely diagnosed CRC. <b><i>Method:</i></b> We report the molecular profile of 512 Swiss CRC patients analyzed by targeted next-generation sequencing as part of routine diagnostics at our institute. <b><i>Results:</i></b> Pathogenic and likely pathogenic variants were found in 462 (90%) CRC patients. Variants were detected in <i>TP53</i> (54.3%), <i>KRAS</i> (48.2%), <i>PIK3CA</i> (15.6%), <i>BRAF</i> (13.5%), <i>SMAD4</i> (10.5%), <i>FBXW7</i> (7.8%), <i>NRAS</i> (3.5%), <i>PTEN</i> (2.7%), <i>ERBB2</i> (1.6%), <i>AKT1</i> (1.5%), and <i>CTNNB1</i> (0.9%). The remaining pathogenic alterations were found in the genes <i>ATM</i>(<i>n</i>= 1), <i>MAP2K1</i>(<i>n</i>= 1), and <i>IDH2</i>(<i>n</i>= 1). <b><i>Discussion/Conclusions:</i></b> Our analysis revealed the prevalence of potential predictive markers in a large cohort of CRC patients obtained during routine diagnostic analysis. Furthermore, our study is the first of this size to uncover the molecular landscape of CRC in Switzerland.
DOI: 10.17632/dsfty2rn7y.1
title: Rolling vs. Seasonal comparison

description: Multi-site real-world dataset and synthetic dataset time series for the rolling vs. seasonal comparison
DOI: 10.17632/nd79y8mpg3.1
title: Rolling vs. Seasonal PMF coding

description: This dataset contains the codes for the multi-site (MS) and synthetic dataset (SD) approaches to perform the rolling vs. seasonal PMF comparison.
DOI: 10.5066/f7bg2m2n
title: Missouri River 2011 Regional Sand Floodplain

description: This is a polygon coverage of sand deposits from the 2011 Missouri River flood. The polygon coverages were compiled from classification of 26 multispectral SPOT (Systme Pour lObservation de la Terre) 4 and 5 satellite images colleted during October and November, 2011. The dataset covers 1,298 km of the Missouri River valley bottom from Gavins Point Dam in South Dakota to the confluence with the Mississippi River near St. Louis, Missouri. Dataset is described in: Alexander, J.S., Jacobson, R.B., and Rus, D.L., 2013, Sediment transport and deposition in the lower Missouri River during the 2011 flood: U.S. Geological Survey Professional Paper, 27 p. http://pubs.usgs.gov/pp/1798f/
DOI: 10.5281/zenodo.5558291
title: Replication package for "Pitfalls and Guidelines for Using Time-Based VCS Data"

description: This dataset includes scripts, text files, and JSON files used to generate all analysis and results from the paper. A README.md file is included for details on using the scripts - though all of the data the scripts generate should already be cached as JSON or txt files and none of the scripts actually need run. It also includes a spreadsheet containing the paper survey results and manual judgements. The scripts are also on GitHub: https://github.com/psybers/emse21-timestudy
DOI: 10.5285/69b2c9c6c4714517ba10dab3515e4ee6
title: BICEP / NCEO: Monthly global Marine Phytoplankton Primary Production, between 1998-2020 at 9 km resolution (derived from the Ocean Colour Climate Change Initiative v4.2 dataset)

description: This dataset contains global, monthly marine phytoplankton primary production products (in mg C m-2 d-1) for the period of 1998 to 2018 at 9 km spatial resolution. Data are provided in NetCDF format. Primary production by marine phytoplankton was modelled using ocean-colour remote sensing products and a spectrally-resolved primary production model that incorporates the vertical structure of phytoplankton and simulates changes in photosynthesis as a function of irradiance using a two-parameter photosynthesis versus irradiance (P-I) function (see Kulk et al. 2020, Sathyendranath et al. 2020a, and references therein for details). Chlorophyll-a products were obtained from the European Space Agency (ESA) Ocean Colour Climate Change Initiative (OC-CCI v4.2 dataet). Photosynthetic Active Radiation (PAR) products were obtained from the National Aeronautics and Space Administration (NASA) and were corrected for inter-sensor bias in products. In situ datasets of chlorophyll-a profile parameters and P-I parameters were incorporated as described in Kulk et al. (2020). The primary production products were generated as part of the ESA Living Planet Fellowship programme ‘Primary production, Index of Climate Change in the Ocean: Long-term Observations’ (PICCOLO). Support from the Simons Foundation grant ‘Computational Biogeochemical Modeling of Marine Ecosystems’ (CBIOMES, number 549947), from the ESA Biological Pump and Carbon Exchange Processes (BICEP) project and from the National Centre of Earth Observation (NCEO) is acknowledged. Data are provided as netCDF files containing global, monthly marine phytoplankton primary production products (in mg C m-2 d-1) for the period of 1998 to 2020 at 9 km spatial resolution. References: Kulk, G.; Platt, T.; Dingle, J.; Jackson, T.; Jönsson, B.F.; Bouman, H.A., Babin, M.; Doblin, M.; Estrada, M.; Figueiras, F.G.; Furuya, K.; González, N.; Gudfinnsson, H.G.; Gudmundsson, K.; Huang, B.; Isada, T.; Kovac, Z.; Lutz, V.A.; Marañón, E.; Raman, M.; Richardson, K.; Rozema, P.D.; Van de Poll, W.H.; Segura, V.; Tilstone, G.H.; Uitz, J.; van Dongen-Vogels, V.; Yoshikawa, T.; Sathyendranath S. Primary production, an index of climate change in the ocean: Satellite-based estimates over two decades. Remote Sens. 2020, 12, 826. doi:10.3390/rs12050826 Sathyendranath, S.; Platt, T.; Žarko K.; Dingle, J.; Jackson, T.; Brewin, R.J.W.; Franks, P.; Nón, E.M.; Kulk, G.; Bouman, H. Reconciling models of primary production and photoacclimation. Appl. Opt. 2020a, 59, C100-C114. doi.org/10.1364/AO.386252.
DOI: 10.5517/ccdc.csd.cc1pfslh
title: CCDC 1562387: Experimental Crystal Structure Determination

description: Related Article: Zhang Liu Gen|2017|CSD Communication|||
DOI: 10.5517/ccx8ltk
title: CCDC 842419: Experimental Crystal Structure Determination

description: Related Article: V.Bohmer, V.Brusko, M.Bolte|2011|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20072159
title: Supplementary Material for: Long non-coding RNA brain cytoplasmic RNA 1 induces cisplatin-resistance of cervical cancer cells by sponging microRNA-330-5p and upregulating high-mobility group box 3

description: Objectives: To find out the function of long non-coding RNA (lncRNA) brain cytoplasmic RNA 1 (BCYRN1) in cisplatin (DDP)-resistance of cervical cancer (CC) cells. Design and Materials, Setting, Methods: BCYRN1 expression in CC and DDP-resistant cells was evaluated, with the association of BCYRN1 and prognosis analyzed. Then, DDP-resistant cells with BCYRN1 knockdown were established and the DDP-resistance of these cells was assessed. BCYRN1 subcellular localization was detected and confirmed. Besides, binding relation of BCYRN1 and microRNA (miR)- 330-5p and between miR-330-5p and high-mobility group box 3 (HMGB3) were examined and verified. Moreover, role of miR-330-5p and HMGB3 in the mechanism of BCYRN1 modulating DDP-resistance of CC cells was detected. In addition, xenograft transplantation was conducted to confirm the effect of BCYRN1 in CC cell DDP-resistance. Results: BCYRN1 was overexpressed in CC, which resulted in poor prognosis and DDP-resistance. BCYRN1 knockdown in DDP-resistant cells downregulated DDP-resistance. Mechanically, BCYRN1 sponged miR-330-5p to strengthen HMGB3 mRNA level. Besides, miR-330-5p underexpression or HMGB3 overexpression reversed the function of BCYRN1 knockdown in inhibiting DDP-resistance of CC cells. Eventually, BCYRN1 knockdown reduced DDP-resistance of CC cells in vivo. Limitations: There are still some deficiencies in the research; for example, whether there are other miRs working as the downstream genes of BCYRN1 in the ceRNA interaction is not fully clarified; nor the other downstream mechanism of miR-330-5p. Besides, the experimental findings and application into practice need extensive validation. Conclusions: BCYRN1 knockdown could disrupt DDP-resistance of CC cells through upregulating miR-330-5p to suppress HMGB3 mRNA level.
DOI: 10.6084/m9.figshare.20131625
title: Supplementary Material for: Brain Morphometric Correlates of Depressive Symptoms among Patients with and without Dementia

description: <b><i>Introduction:</i></b> Findings regarding brain morphometry among patients with dementia and concomitant depressive symptoms have been inconsistent. Thus, the aim of the present study was to test the hypothesis that dementia and concomitant depressive symptoms are associated with structural brain changes in the temporal lobe measured with structural magnetic resonance imaging (MRI). <b><i>Methods:</i></b> A sample of 492 patients from Norwegian memory clinics (<i>n</i> = 363) and Old Age Psychiatry services (<i>n</i> = 129) was studied. The assessment included the Cornell Scale for Depression in Dementia (CSDD), Instrumental Activities of Daily Living Scale, Mini Mental State Examination, and MRI of the brain, processed with FreeSurfer to derive ROI measures of cortical thickness, volume, and area using the Desikan-Killiany parcellation, as well as subcortical volumes. Dementia was diagnosed according to ICD-10 research criteria. Correlates of brain morphometry using multiple linear regression were examined. <b><i>Results:</i></b> Higher scores on the CSDD were associated with larger cortical volume (β = 0.125; <i>p</i> value = 0.003) and area of the left isthmus of the cingulate gyrus (β = 0.151; <i>p</i> value = &lt;0.001) across all patients. Inclusion of an interaction term (dementia × CSDD) revealed a smaller area in the left temporal pole (β = −0.345; <i>p</i> value = 0.001) and right-transverse temporal cortex (β = −0.321; <i>p</i> value = 0.001) in patients with dementia and depressive symptoms. <b><i>Discussion/Conclusion:</i></b> We confirm the previous findings of structural brain changes in temporal regions among patients with dementia and concomitant depressive symptoms. This may contribute to a better understanding of the mechanisms underlying depression in dementia. To the best of our knowledge, this is the largest study conducted on this topic to date.
DOI: 10.6084/m9.figshare.21285969
title: Supplementary Material for: Immunogenicity and Safety of the Spikevax® (Moderna) mRNA SARS-CoV-2 Vaccine in Patients with Primary Humoral Immunodeficiency

description: <b><i>Introduction:</i></b> Reports on the immunogenicity and efficacy of the Spikevax® vaccine against SARS-CoV-2 in immunodeficient patients are still scarce. We aimed to evaluate the safety and immunogenicity of the vaccine in patients with primary humoral immunodeficiency. <b><i>Methods:</i></b> We enrolled 46 patients, including 34 patients with common variable immunodeficiency (CVID), 10 patients with unclassified hypogammaglobulinemia (HypoIg), and 2 patients with X-linked agammaglobulinemia. We collected the blood samples before vaccination (D 0), and 10 days (D +38) and 90 days (D +118) after the second vaccination. Further, we quantified SARS-CoV-2-specific T-cell response (QuantiFERON ELISA test), serum anti-RBD IgG, and anti-RBD IgA-specific antibodies (enzyme immunoassay). <b><i>Results:</i></b> We found that the vaccination elicited predominantly mild adverse events, comparable to healthy population. Vaccination response negatively correlated with a value of Immune Deficiency and Dysregulation Activity in all measured parameters. D +38, seroconversion for anti-RBD IgG and anti-RBD IgA was observed in 65% and 21% CVID patients, respectively. SARS-CoV-2-specific T-cell response was detected in less than 50% of CVID patients. Meanwhile, HypoIg patients had 100%, 90%, and 60% positivity rates for anti-RBD IgG, anti-RBD IgA, and T-cell response, respectively. Three months after the second vaccination, 82% of the responders remained positive for anti-RBD IgG, but only less than 50% remained positive for T-cell activity in CVIDs. Low immunogenicity was observed in patients with lung involvement and/or rituximab treatment history. No SARS-CoV-2 infection was reported within 6 months after the second vaccination. <b><i>Conclusion:</i></b> Spikevax® seems to be safe with satisfactory immunogenicity in patients with primary humoral immunodeficiency.
DOI: 10.6084/m9.figshare.21286263
title: Supplementary Material for: “Mild’’ Hypoxic-Ischaemic Encephalopathy and Therapeutic Hypothermia: A Survey of Clinical Practice and Opinion from 35 Countries

description: <b><i>Introduction:</i></b> We aimed to determine global professional opinion and practice for the use of therapeutic hypothermia (TH) for treating infants with mild hypoxic-ischaemic encephalopathy (HIE). <b><i>Methods:</i></b> A web-based survey (REDCap) was distributed via emails, social networking sites, and professional groups from October 2020 to February 2021 to neonatal clinicians in 35 countries. <b><i>Results:</i></b> A total of 484 responses were obtained from 35 countries and categorized into low/middle-income (43%, LMIC) or high-income (57%, HIC) countries. Of the 484 respondents, 53% would provide TH in mild HIE on case-to-case basis and only 25% would never cool. Clinicians from LMIC were more likely to routinely offer TH in mild HIE (25% <i>v</i> HIC 16%, <i>p</i> &lt; 0.05), have a unit protocol for providing TH (50% <i>v</i> HIC 26%, <i>p</i> &lt; 0.05), use adjunctive tools, e.g., aEEG (49% <i>v</i> HIC 32%, <i>p</i> &lt; 0.001), conduct an MRI post TH (48% <i>v</i> HIC 40%, <i>p</i> &lt; 0.05) and less likely to use neurological examinations as a HIE severity grading tool (80% <i>v</i> HIC 95%, <i>p</i> &lt; 0.001). The majority of respondents (91%) would support a randomized controlled trial that was sufficiently large to examine neurodevelopmental outcomes in mild HIE after TH. <b><i>Conclusions:</i></b> This is the first survey of global opinion for TH in mild HIE. The overwhelming majority of professionals would consider “cooling” an infant with mild HIE, but LMIC respondents were more likely to routinely cool infants with mild HIE and use adjunctive tools for diagnosis and follow-up. There is wide practice heterogeneity and a sufficiently large RCT designed to examine neurodevelopmental outcomes, is urgently needed and widely supported.
DOI: 10.5281/zenodo.2612896
title: Libraries & Recommended Citations for using PLAsTiCC Models

description: Text file libraries for transient and variable source models used in the "Photometric LSST Astronomical Time-Series Classification Challenge" (PLAsTiCC).  The original challenge (Sep 28, 2018 - Dec 17, 2018) was hosted at  https://www.kaggle.com/c/PLAsTiCC-2018. See AAA_README.pdf for more information.
DOI: 10.5281/zenodo.7076426
title: Impacts of pressure, temperature, and rel. humidity on NDIR CO2 sensors (DATA)

description: These files support the experiments demonstrated in the peer-reviewed article "Low-complexity methods to mitigate the impact of environmental variables on low-cost UAS-based atmospheric carbon dioxide measurements", available via open access at the European Geophysical Union's Atmospheric Measurements Techniques journal.
DOI: 10.6084/m9.figshare.21097213.v1
title: Dataset of Incomplete Immunization Status of Health Workers' Children at a Tertiary Referral Hospital in Surabaya.

description: The dataset of the incomplete immunization status of health workers' children consists of participants' age, children's age, socio-demographic data, the parents' knowledge regarding the immunization status of their children, and other variables studied.
DOI: 10.11577/1454414
title: Ptychography Gold Ball Example Dataset