cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c50k3h
title: MassIVE MSV000088439 - MICU3 Plays an Important Role in Cardiovascular Function
title: Mitochondrial calcium regulates bioenergetics but also serves as a trigger for cell death.1 With a sustained increase in catecholamine or a large increase in cytosolic calcium as occurs with ischemia, mitochondrial calcium can rise to high levels, leading to activation of the mitochondrial permeability transition pore, thus initiating cell death.1 Calcium uptake into mitochondria occurs via the MCU (mitochondrial calcium uniporter), which is regulated by 3 EF (EF hand protein) hand proteins, MICU (mitochondrial calcium uptake) 1, 2, and 3.2 MICU1/MCU ratios vary in different tissues,3 and alterations in substrate flux have been shown to regulate MICU1 levels altering MCU-mediated calcium uptake.4 MICU3 has generally been thought to function primarily in neuronal tissue where it is highly expressed and thus has been largely ignored in other tissues such as the heart. We performed quantitative proteomics using Tandem mass tag labeling coupled to liquid chromatography and tandem mass spectrometry to analyze MCU and MCU regulators in cardiac and hepatic mitochondria (Figure [A]). Normalizing MICU levels to MCU in heart and liver mitochondria, we found that the MICU1/MCU ratio was 0.75 in liver and 0.25 in heart, which is consistent with previous studies3; however, the MICU3/MCU ratio in heart is &gt;3-fold higher than that found in liver. To confirm that the MICU3 we observed in heart mitochondria was not due to contamination by mitochondria from nerve tissue in heart, we isolated cardiomyocytes and compared the ratio of MICU3 to MCU in cardiomyocytes and heart mitochondria and found similar ratios (Figure [B]). These data suggest that MICU3 might play a role in regulating MCU in heart.
DOI: 10.15468/6nr3r9
title: The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Assis 1, Leonardo de, Schimonsky 1, Diego Monteiro von, Bichuette 1, Maria Elina (2021): The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species. Subterranean Biology 40: 109-128, DOI: http://dx.doi.org/10.3897/subtbiol.40.77451, URL: http://dx.doi.org/10.3897/subtbiol.40.77451
DOI: 10.15468/mnhjap
title: Taxonomy of the Proisotoma complex. VI. Rediscovery of the genus Bagnallella Salmon, 1951 and epitoky in Bagnallella davidi (Barra, 2001), comb. nov. from South Africa

description: This dataset contains the digitized treatments in Plazi based on the original journal article Potapov, Mikhail, Deharveng, Louis, Janion-Scheepers, Charlene (2021): Taxonomy of the Proisotoma complex. VI. Rediscovery of the genus Bagnallella Salmon, 1951 and epitoky in Bagnallella davidi (Barra, 2001), comb. nov. from South Africa. ZooKeys 1072: 185-204, DOI: http://dx.doi.org/10.3897/zookeys.1072.71307, URL: http://dx.doi.org/10.3897/zookeys.1072.71307
DOI: 10.15468/fa8yfm
title: Three new species of cave Troglopedetes (Collembola, Paronellidae, Troglopedetinae) from Thailand, with a key to the Thai species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Surakhamhaeng 1, Katthaleeya, Deharveng 2, Louis, Jantarit 3, Sopark (2021): Three new species of cave Troglopedetes (Collembola, Paronellidae, Troglopedetinae) from Thailand, with a key to the Thai species. Subterranean Biology 40: 129-174, DOI: http://dx.doi.org/10.3897/subtbiol.40.73143, URL: http://dx.doi.org/10.3897/subtbiol.40.73143
DOI: 10.6084/m9.figshare.17073218
title: Additional file 3 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 2: Data S1. FCR ranking of the experimental animals.
DOI: 10.6084/m9.figshare.17073218.v1
title: Additional file 3 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 2: Data S1. FCR ranking of the experimental animals.
DOI: 10.6084/m9.figshare.17073221.v1
title: Additional file 4 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 3: Data S2. Assembly statistics of the samples investigated in this study.
DOI: 10.6084/m9.figshare.17073224.v1
title: Additional file 5 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 4: Data S3. Bacterial composition (phyla, family, genera, and species) detected in the rumen metatranscriptome of forage-fed bulls.
DOI: 10.6084/m9.figshare.17073224
title: Additional file 5 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 4: Data S3. Bacterial composition (phyla, family, genera, and species) detected in the rumen metatranscriptome of forage-fed bulls.
DOI: 10.6084/m9.figshare.17073227.v1
title: Additional file 6 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 5: Data S4. Microbial functions (levels 1, 2, 3 and 4) detected in the rumen metatranscriptome of forage-fed bulls.
DOI: 10.6084/m9.figshare.17073227
title: Additional file 6 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 5: Data S4. Microbial functions (levels 1, 2, 3 and 4) detected in the rumen metatranscriptome of forage-fed bulls.
DOI: 10.6084/m9.figshare.17073230
title: Additional file 7 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 6: Data S5. CAZyme families identified in this study.
DOI: 10.6084/m9.figshare.17073230.v1
title: Additional file 7 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 6: Data S5. CAZyme families identified in this study.
DOI: 10.6084/m9.figshare.17073233
title: Additional file 8 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 7: Data S6. Significant functions differentiating the rumen of L-FCR from H-FCR cattle.
DOI: 10.6084/m9.figshare.17073233.v1
title: Additional file 8 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 7: Data S6. Significant functions differentiating the rumen of L-FCR from H-FCR cattle.
DOI: 10.6084/m9.figshare.17073236
title: Additional file 9 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 8: Data S7. Targeted functional profiling of GH11 and GH45 families.
DOI: 10.6084/m9.figshare.17073236.v1
title: Additional file 9 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 8: Data S7. Targeted functional profiling of GH11 and GH45 families.
DOI: 10.5281/zenodo.4696056
title: Ithomiini grid-cell records for distribution modeling

description: This repository contains georeferenced <strong>occurrence data</strong> for ithomiine butterflies (tribe Ithomiini) needed to reproduce the analyses presented in the research paper <strong>"Anthropogenic pressures coincide with Neotropical biodiversity hotspots in a flagship butterfly group"</strong>: https://doi.org/10.1111/ddi.13455. <strong>Distribution maps</strong> generated from distribution models runned on these occurrences data are available in an other associated archive: https://doi.org/10.5281/zenodo.4673446. <strong>Mimicry classification</strong> used for theses analyses is available in this associated archive: https://doi.org/10.5281/zenodo.5497876. <strong>Scripts</strong> to reproduce these maps are available on Github at https://github.com/MaelDore/ithomiini_diversity. This repository contains an Excel file with the occurrence records and associated metadata in separated tabs.
DOI: 10.5517/ccdc.csd.cc28mrl8
title: CCDC 2104360: Experimental Crystal Structure Determination

description: Related Article: Maotong Xu, Tongtong Wang, Zheng-Wang Qu, Stefan Grimme, Douglas W. Stephan|2021|Angew.Chem.,Int.Ed.|60|25281|doi:10.1002/anie.202111486
DOI: 10.5517/ccdc.csd.cc28mrm9
title: CCDC 2104361: Experimental Crystal Structure Determination

description: Related Article: Maotong Xu, Tongtong Wang, Zheng-Wang Qu, Stefan Grimme, Douglas W. Stephan|2021|Angew.Chem.,Int.Ed.|60|25281|doi:10.1002/anie.202111486
DOI: 10.5517/ccdc.csd.cc28mrnb
title: CCDC 2104362: Experimental Crystal Structure Determination

description: Related Article: Maotong Xu, Tongtong Wang, Zheng-Wang Qu, Stefan Grimme, Douglas W. Stephan|2021|Angew.Chem.,Int.Ed.|60|25281|doi:10.1002/anie.202111486
DOI: 10.5517/ccdc.csd.cc28mrpc
title: CCDC 2104363: Experimental Crystal Structure Determination

description: Related Article: Maotong Xu, Tongtong Wang, Zheng-Wang Qu, Stefan Grimme, Douglas W. Stephan|2021|Angew.Chem.,Int.Ed.|60|25281|doi:10.1002/anie.202111486
DOI: 10.5517/ccdc.csd.cc28mrwk
title: CCDC 2104369: Experimental Crystal Structure Determination

description: Related Article: Xiuting Gao, Xiaohe Wang, Miaomiao Feng, Ming Yang, Qingfu Zhang|2021|RSC Advances|11|32622|doi:10.1039/D1RA06590D
DOI: 10.5517/ccdc.csd.cc28p4kp
title: CCDC 2105692: Experimental Crystal Structure Determination

description: Related Article: Doruk Ergöçmen, Jose M. Goicoechea|2021|Angew.Chem.,Int.Ed.|60|25286|doi:10.1002/anie.202111619
DOI: 10.5517/ccdc.csd.cc28p4lq
title: CCDC 2105693: Experimental Crystal Structure Determination

description: Related Article: Doruk Ergöçmen, Jose M. Goicoechea|2021|Angew.Chem.,Int.Ed.|60|25286|doi:10.1002/anie.202111619
DOI: 10.5517/ccdc.csd.cc28p4mr
title: CCDC 2105694: Experimental Crystal Structure Determination

description: Related Article: Doruk Ergöçmen, Jose M. Goicoechea|2021|Angew.Chem.,Int.Ed.|60|25286|doi:10.1002/anie.202111619
DOI: 10.5517/ccdc.csd.cc28p4ns
title: CCDC 2105695: Experimental Crystal Structure Determination

description: Related Article: Doruk Ergöçmen, Jose M. Goicoechea|2021|Angew.Chem.,Int.Ed.|60|25286|doi:10.1002/anie.202111619
DOI: 10.6084/m9.figshare.17073425.v1
title: Additional file 3 of Additive Bayesian network analysis of the relationship between bovine respiratory disease and management practices in dairy heifer calves at pre-weaning stage

description: Additional file 3. Details of parameters for variables in univariate generalised linear model (GLM) and generalised linear mixed model (GLMM) for bovine respiratory disease (BRD) in pre-weaned calves. The original farm of each calf was regarded as a random effect in the GLMM.
DOI: 10.6084/m9.figshare.17073402.v1
title: Additional file 1 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Differentially expressed genes in fresh testicular tissue of adult compared to juvenile cat; Wald test, adjusted p-value 2.
DOI: 10.6084/m9.figshare.17073405.v1
title: Additional file 2 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Differentially expressed genes in fresh testicular tissue of adult compared to late juvenile cat; Wald test, adjusted p-value 2.
DOI: 10.6084/m9.figshare.17073408.v1
title: Additional file 3 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Differentially expressed genes in fresh testicular tissue of late compared to early juvenile cat; Wald test, adjusted p-value 2.
DOI: 10.6084/m9.figshare.17073411.v1
title: Additional file 4 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Differentially expressed genes in fresh tissue shared between all comparison pairs adult vs. late juvenile, adult vs. early juvenile and late vs. early juvenile (Sheet-1) or only between comparison pairs adult vs. late juvenile and late vs. early juvenile (Sheet-2); Wald test, adjusted p-value 2.
DOI: 10.6084/m9.figshare.17073417.v1
title: Additional file 6 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Genes affected by vitrification independent of age; likelihood ratio test, condition effect, adjusted p-value 1.5.
DOI: 10.6084/m9.figshare.17073414.v1
title: Additional file 5 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Web session interactive view with data table of Enrichment Map networks for comparison pairs adult vs. juvenile, adult vs. late juvenile and late vs. early juvenile. For description and legends refer to Fig. 3 A (adult vs. juvenile) and Fig. 3B (adult vs. late juvenile, late vs. early juvenile).
DOI: 10.6084/m9.figshare.17073423.v1
title: Additional file 7 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Web session interactive view with data table for Enrichment map and STRING network for genes responsive to vitrification in adult and juvenile samples. For description and legend refer to Fig. 4 F (Enrichment map) and Fig. 4G (STRING network).
DOI: 10.6084/m9.figshare.17073479
title: Additional file 2 of Changes in surface water masses in the northern East China Sea since the Last Glacial Maximum based on diatom assemblages

description: Additional file 2: Plates 1-6. LM and SEM images of major diatom taxa in Core KY07-04 PC01.
DOI: 10.6084/m9.figshare.17073479.v1
title: Additional file 2 of Changes in surface water masses in the northern East China Sea since the Last Glacial Maximum based on diatom assemblages

description: Additional file 2: Plates 1-6. LM and SEM images of major diatom taxa in Core KY07-04 PC01.
DOI: 10.6084/m9.figshare.17073333.v1
title: Additional file 3 of Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains

description: Additional file 3. Model statistics and domain enrichment Additional file descriptions text.
DOI: 10.6084/m9.figshare.17073330.v1
title: Additional file 2 of Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains

description: Additional file 2. Genome metadata, annotation statistics and the domain matrix Additional file descriptions text.
DOI: 10.6084/m9.figshare.17073327.v1
title: Additional file 1 of Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains

description: Additional file 1. Input and output of the SQL database. Additional file descriptions text.
DOI: 10.6084/m9.figshare.17073300.v1
title: Additional file 2 of Spliceator: multi-species splice site prediction using convolutional neural networks

description: Additional file 2. Tables S1–S3, performance results of donor and acceptor models
DOI: 10.6084/m9.figshare.17073425
title: Additional file 3 of Additive Bayesian network analysis of the relationship between bovine respiratory disease and management practices in dairy heifer calves at pre-weaning stage

description: Additional file 3. Details of parameters for variables in univariate generalised linear model (GLM) and generalised linear mixed model (GLMM) for bovine respiratory disease (BRD) in pre-weaned calves. The original farm of each calf was regarded as a random effect in the GLMM.
DOI: 10.6084/m9.figshare.17073423
title: Additional file 7 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Web session interactive view with data table for Enrichment map and STRING network for genes responsive to vitrification in adult and juvenile samples. For description and legend refer to Fig. 4 F (Enrichment map) and Fig. 4G (STRING network).
DOI: 10.6084/m9.figshare.17073417
title: Additional file 6 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Genes affected by vitrification independent of age; likelihood ratio test, condition effect, adjusted p-value 1.5.
DOI: 10.6084/m9.figshare.17073414
title: Additional file 5 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Web session interactive view with data table of Enrichment Map networks for comparison pairs adult vs. juvenile, adult vs. late juvenile and late vs. early juvenile. For description and legends refer to Fig. 3 A (adult vs. juvenile) and Fig. 3B (adult vs. late juvenile, late vs. early juvenile).
DOI: 10.6084/m9.figshare.17073411
title: Additional file 4 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Differentially expressed genes in fresh tissue shared between all comparison pairs adult vs. late juvenile, adult vs. early juvenile and late vs. early juvenile (Sheet-1) or only between comparison pairs adult vs. late juvenile and late vs. early juvenile (Sheet-2); Wald test, adjusted p-value 2.
DOI: 10.6084/m9.figshare.17073408
title: Additional file 3 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Differentially expressed genes in fresh testicular tissue of late compared to early juvenile cat; Wald test, adjusted p-value 2.
DOI: 10.6084/m9.figshare.17073405
title: Additional file 2 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Differentially expressed genes in fresh testicular tissue of adult compared to late juvenile cat; Wald test, adjusted p-value 2.
DOI: 10.6084/m9.figshare.17073402
title: Additional file 1 of Transcriptome dynamics in developing testes of domestic cats and impact of age on tissue resilience to cryopreservation

description: Differentially expressed genes in fresh testicular tissue of adult compared to juvenile cat; Wald test, adjusted p-value 2.
DOI: 10.6084/m9.figshare.17073333
title: Additional file 3 of Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains

description: Additional file 3. Model statistics and domain enrichment Additional file descriptions text.
DOI: 10.6084/m9.figshare.17073330
title: Additional file 2 of Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains

description: Additional file 2. Genome metadata, annotation statistics and the domain matrix Additional file descriptions text.
DOI: 10.6084/m9.figshare.17073327
title: Additional file 1 of Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains

description: Additional file 1. Input and output of the SQL database. Additional file descriptions text.
DOI: 10.6084/m9.figshare.13089344
title: HEXACO and sociosexuality

description: Relationship of HEXACO-PI with sociosexuality
DOI: 10.6084/m9.figshare.13089344.v2
title: HEXACO and sociosexuality

description: Relationship of HEXACO-PI with sociosexuality
DOI: 10.6084/m9.figshare.13089344.v1
title: Sociosexuality, Reciprocal Social Behaviour and the HEXACO Model of Personality

description: Complete HEXACO-Personality Inventory, revised-Sociosexual Inventory and reciprocal kin-selection data
DOI: 10.6084/m9.figshare.17073300
title: Additional file 2 of Spliceator: multi-species splice site prediction using convolutional neural networks

description: Additional file 2. Tables S1–S3, performance results of donor and acceptor models
DOI: 10.5281/zenodo.5722715
title: Applying the metallicity-dependent binary fraction to double white dwarf formation, Implications for LISA, results

description: This dataset contains data created by post-processing pipeline to produce the figures from Thiele+2021<br><br>Created using showyourwork from this GitHub repo using the following command: <pre><code class="language-bash">cd src/figures && python src/figures/pipeline.py</code></pre>
DOI: 10.5281/zenodo.5722691
title: Applying the metallicity-dependent binary fraction to double white dwarf formation, Implications for LISA, results

description: This dataset contains data created by post-processing pipeline to produce the figures from Thiele+2021<br><br>Created using showyourwork from this GitHub repo using the following command: <pre><code class="language-bash">cd src/figures && python src/figures/pipeline.py</code></pre>
DOI: 10.6084/m9.figshare.17073221
title: Additional file 4 of Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

description: Additional file 3: Data S2. Assembly statistics of the samples investigated in this study.
DOI: 10.5281/zenodo.5718451
title: Dataset for "Implementation of disequilibrium chemistry to spectral retrieval code ARCiS and application to 16 exoplanet transmission spectra. Indication of disequilibrium chemistry for HD 209458b and WASP-39b"

description: This is the supplemental materials for the Astronomy & Astrophysics publication "Implementation of disequilibrium chemistry to spectral retrieval code ARCiS and application to 16 exoplanet transmission spectra. Indication of disequilibrium chemistry for HD 209458b and WASP-39b". Please refer to "README.md" for details.
DOI: 10.5281/zenodo.5716486
title: IIMAS

description: The Instituto de Investigaciones en Matemáticas Aplicadas y en Sistemas, or IIMAS ("Applied Mathematics and Systems Research Institute") is the research institute of the UNAM in Mexico City which focuses on computer science, applied mathematics, and robotics and control engineering.
DOI: 10.5281/zenodo.5716485
title: IIMAS

description: The Instituto de Investigaciones en Matemáticas Aplicadas y en Sistemas, or IIMAS ("Applied Mathematics and Systems Research Institute") is the research institute of the UNAM in Mexico City which focuses on computer science, applied mathematics, and robotics and control engineering.
DOI: 10.5281/zenodo.5710661
title: Data and output files for the paper, "Dynamical systems inference at scale reveals intrinsic instability in the dysbiotic microbiome"

description: The above files contain the output of the model, which we call MDSINE2, developed in the paper titled, "<em>Dynamical systems inference at scale reveals intrinsic instability in the dysbiotic microbiome</em>" (See https://github.com/gerberlab/MDSINE2_Paper for implementation details). More specifically, forward_sims.tgz contains the output of forward simulations in .npy format; mixed_prior_fixed.tgz contains the pickle files corresponding to the output of the MCMC simulations for fixed topology; mixed_prior_unfixed.tgz contains the pickle files corresponding to the output of the MCMC simulations for unfixed topology; other_files contains the output in .npy format for comparator methods; ASV_OTU_aggregate_and_plylogeneteic trees contains the plots of trajectories (relative abundance) of OTUS and their constituent ASVs, and of phylogenetic trees.
description: The files can be used to produce the figures in the paper without having to run the full model.