cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13133267
title: Global Flood Forecasting (GFF)

description: Dataset from paper: Off to new Shores: A Dataset & Benchmark for (near-)coastal Flood Inundation Forecasting

Consists of target flood maps and various inputs used to predict said flood maps. Each input modality is contained in a separate zip file. Each zip file contains a collection of raster data, one file per ROI.

Files:



base.zip - Contains flood maps and meta-data (e.g. geolocations). Includes Kuro Siwo labels.

s1.zip - Contains Copernicus Sentinel-1 data from 2014-2020 obtained through Alaska Foundation, using an EarthData account.

era5.zip - Contains ERA5 and ERA5-Land data products obtained from Google Earth Engine (GEE), which was originally generated using Copernicus Climate Change Service information 2014-2020.

glofas.zip - Contains GLOFAS v4.0 data from Copernicus Climate Change Service's Climate Data Store (CDS).

hydroatlas.zip - Contains HydroATLAS v10 data. Rasterized and resampled to match ERA5-Land.

hand.zip - Contains HAND data (CC0 license). Resampled to match Sentinel-1.

dem.zip - Contains CopDEM GLO-30 data. Resampled to match Sentinel-1 and ERA5-Land.

extras.zip - Contains 4 folders of extra data:



vit-snunet-extra - Flood maps, meta-data and S1 of ROIs that fell outside era5 availability.

vit-snunet-raw - Raw floodmaps generated by Kuro Siwo model (after removing tiling effects, before other post-processing)

vit - Alternate flood maps; generated using FloodViT model only

snunet - Alternate flood maps; generated using SNUNet model only



worldcover.zip - Contains worldcover data (CC-BY license) resampled (nearest) to Sentinel-1. Only used at evaluation time. 


Instructions: 



Download whichever inputs you want to use.

Extract all in the same folder.

Point the code to that folder.


Licenses: The redistributed data products (s1, era5, hydroatlas, hand, dem and worldcover) retain their original licenses. They are, however, very permissive. Only HydroATLAS is not necessarily available for commercial use.
DOI: 10.5281/zenodo.14184289
title: Global Flood Forecasting (GFF)

description: Dataset from paper: Off to new Shores: A Dataset & Benchmark for (near-)coastal Flood Inundation Forecasting

Consists of target flood maps and various inputs used to predict said flood maps. Each input modality is contained in a separate zip file. Each zip file contains a collection of raster data, one file per ROI.

Files:



base.zip - Contains flood maps and meta-data (e.g. geolocations). Includes Kuro Siwo labels.

s1.zip - Contains Copernicus Sentinel-1 data from 2014-2020 obtained through Alaska Foundation, using an EarthData account.

era5.zip - Contains ERA5 and ERA5-Land data products obtained from Google Earth Engine (GEE), which was originally generated using Copernicus Climate Change Service information 2014-2020.

glofas.zip - Contains GLOFAS v4.0 data from Copernicus Climate Change Service's Climate Data Store (CDS).

hydroatlas.zip - Contains HydroATLAS v10 data. Rasterized and resampled to match ERA5-Land.

hand.zip - Contains HAND data (CC0 license). Resampled to match Sentinel-1.

dem.zip - Contains CopDEM GLO-30 data. Resampled to match Sentinel-1 and ERA5-Land.

extras.zip - Contains 4 folders of extra data:



vit-snunet-extra - Flood maps, meta-data and S1 of ROIs that fell outside era5 availability.

vit-snunet-raw - Raw floodmaps generated by Kuro Siwo model (after removing tiling effects, before other post-processing)

vit - Alternate flood maps; generated using FloodViT model only

snunet - Alternate flood maps; generated using SNUNet model only



worldcover.zip - Contains worldcover data (CC-BY license) resampled (nearest) to Sentinel-1. Only used at evaluation time. 


Instructions: 



Download whichever inputs you want to use.

Extract all in the same folder.

Point the code to that folder.


Licenses: The redistributed data products (s1, era5, hydroatlas, hand, dem and worldcover) retain their original licenses. They are, however, very permissive. Only HydroATLAS is not necessarily available for commercial use.
DOI: 10.6084/m9.figshare.27852417
title: test

description: test
DOI: 10.6084/m9.figshare.27852417.v1
title: test

description: test
DOI: 10.15468/dl.heze7k
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nymphoides furculifolia Specht"
 ]
}

 The dataset includes 143 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021504-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xmqjwm
title: Occurrence Download

description: A dataset containing 168038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((107.43833 11.09051,109.65196 11.09051,109.65196 13.3726,107.43833 13.3726,107.43833 11.09051))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 168038 records from 324 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021425-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26646748
title: Additional file 3 of Metagenomic analysis reveals distinct changes in the gut microbiome of obese Chinese children

description: Additional file 3.
DOI: 10.6084/m9.figshare.26646748.v1
title: Additional file 3 of Metagenomic analysis reveals distinct changes in the gut microbiome of obese Chinese children

description: Additional file 3.
DOI: 10.1594/pangaea.891191
title: Radiolarian relative abundance and opal and radiolarian accumulation rate from IODP Site 306-U1314

description: A high-resolution record of radiolarian assemblages from Site U1314 was studied to reconstruct hydrographic and climatic changes in the North Atlantic Ocean during the Mid-Pleistocene Transition period (1069–779 ka). Besides the faunal record, absolute accumulation of radiolarians and total biogenic opal are used to determine changes in surface water productivity. Results show that the North Atlantic Arctic Front shifted back and forth repeatedly at a glacial/interglacial timescale, bringing the site under the influence of both cold Arctic (glacial), and much warmer Atlantic (interglacial) waters. During glacial intervals and “ice-rafted debris” (IRD) events, the deep-dwelling taxon Cycladophora davisiana was the greatest contributor of the radiolarian assemblage, suggesting cold surface conditions, melt-water discharge and changes in deep and intermediate circulation. Interglacial intervals were characterized by abundant shallow-dwelling taxa like Pseudodyctiophimus gracilipes and Lithomelissa setosa, increased opal accumulation, and higher radiolarian diversities, indicating a northward flow of warm Atlantic surface waters to the Site U1314 area. A marked change in the structure of the radiolarian assemblage occurred after MIS 22 (~ 860 ka), with large taxa differences between warm and cold periods, probably in response to changing ocean conditions due to the higher amplitude of glacial/interglacial changes as the dominant periodicity of high-latitude climate oscillations shifted from 41-kyr to 100-kyr. Thus, we conclude that the radiolarian assemblage from the North Atlantic have changed drastically along with variations in ocean circulation in response to orbital and millennial-scale climatic variations that occurred in the Early and Mid-Pleistocene.
description: Supplement to: Hernández-Almeida, Iván; Bjorklund, Kjell R; Sierro, Francisco Javier; Filippelli, Gabriel M; Cacho, Isabel; Flores, José-Abel (2013): A high resolution opal and radiolarian record from the subpolar North Atlantic during the Mid-Pleistocene Transition (1069–779ka): Palaeoceanographic implications. Palaeogeography, Palaeoclimatology, Palaeoecology, 391, 49-70
DOI: 10.6084/m9.figshare.26646751
title: Additional file 4 of Metagenomic analysis reveals distinct changes in the gut microbiome of obese Chinese children

description: Additional file 4.
DOI: 10.6084/m9.figshare.26646751.v1
title: Additional file 4 of Metagenomic analysis reveals distinct changes in the gut microbiome of obese Chinese children

description: Additional file 4.
DOI: 10.6084/m9.figshare.26646757
title: Additional file 6 of Metagenomic analysis reveals distinct changes in the gut microbiome of obese Chinese children

description: Additional file 6.
DOI: 10.6084/m9.figshare.26646757.v1
title: Additional file 6 of Metagenomic analysis reveals distinct changes in the gut microbiome of obese Chinese children

description: Additional file 6.
DOI: 10.1594/pangaea.774060
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B02/2001
DOI: 10.1594/pangaea.774061
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B02/2002
DOI: 10.1594/pangaea.774063
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B02/2005
DOI: 10.1594/pangaea.774067
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B02/98
DOI: 10.1594/pangaea.774079
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B06/2001
DOI: 10.1594/pangaea.774070
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B03/94
DOI: 10.1594/pangaea.774081
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B06/95
DOI: 10.1594/pangaea.774090
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B09/96
DOI: 10.1594/pangaea.774093
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B10/2001
DOI: 10.1594/pangaea.891226
title: Ice rafted debris relative abundance and accumulation rate from IODP Site 306-U1314
DOI: 10.1594/pangaea.774086
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B07/95
DOI: 10.1594/pangaea.774094
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B10/2003
DOI: 10.1594/pangaea.774088
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B08/94
DOI: 10.1594/pangaea.891227
title: Calcium carbonate relative abundance from IODP Site 306-U1314
DOI: 10.1594/pangaea.774110
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B16/95
DOI: 10.1594/pangaea.774112
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B17/94
DOI: 10.1594/pangaea.399341
title: Hydrochemistry measured on water bottle samples at station A8/93_156 during the Irminger Sea seasonal study
DOI: 10.1594/pangaea.891259
title: Physical oceanography during Valdivia cruise VA35

description: Hydrographic observations in the North Sea during Valdivia cruise 35 from 30. September - 19. October 1985.
DOI: 10.1594/pangaea.399360
title: Hydrochemistry measured on water bottle samples at station B13/93_998 during the Irminger Sea seasonal study
DOI: 10.1594/pangaea.399368
title: Hydrochemistry measured on water bottle samples at station B1/94_1 during the Irminger Sea seasonal study
DOI: 10.1594/pangaea.774097
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B11/2004
DOI: 10.1594/pangaea.774098
title: Hydrochemistry measured on water bottle samples during Bjarni Saemundsson cruise B11/95
DOI: 10.1594/pangaea.774051
title: Hydrochemistry measured on water bottle samples during Arni Fridriksson cruise A09/95
DOI: 10.1594/pangaea.774052
title: Hydrochemistry measured on water bottle samples during Arni Fridriksson cruise A10/2002
DOI: 10.1594/pangaea.774053
title: Hydrochemistry measured on water bottle samples during Arni Fridriksson cruise A11/95
DOI: 10.1594/pangaea.774054
title: Hydrochemistry measured on water bottle samples during Arni Fridriksson cruise A12/91
DOI: 10.1594/pangaea.774057
title: Hydrochemistry measured on water bottle samples during Arni Fridriksson cruise A14/93
DOI: 10.1594/pangaea.690652
title: Mesozooplankton biomass during Mikhail Lomonosov cruise ML30, Part IV

description: Mesozooplankton was sampled by open-closing JUDAY net with a 36 cm ring diameter and mesh size of 125 µm. Additionally, the JUDAY oceanic model JOM with 300 µm mesh size and 80 cm ring diameter was used. The open-closing mechanism used was the Nansen mechanical lock system allowing nets to be vertically towed through standard depths (0-10, 10-25, 25-50, 50-100, 100-200, 200-300, 300-500 m) and closed at the upper depth level. Depth of tow was evaluated by wire paid out and the angle of wire inclination. The 10-20 ml samples were preserved in 3-4% buffered formaldehyde and processed on return to the laboratory. All of copepods were identified to genus level, other taxanomic groups - to type, class, order and family levels.
DOI: 10.1594/pangaea.692170
title: Mesozooplankton biomass during Mikhail Lomonosov cruise ML30, Part V

description: Mesozooplankton was sampled by open-closing JUDAY net with a 36 cm ring diameter and mesh size of 125 µm. Additionally, the JUDAY oceanic model JOM with 300 µm mesh size and 80 cm ring diameter was used. The open-closing mechanism used was the Nansen mechanical lock system allowing nets to be vertically towed through standard depths (0-10, 10-25, 25-50, 50-100, 100-200, 200-300, 300-500 m) and closed at the upper depth level. Depth of tow was evaluated by wire paid out and the angle of wire inclination. The 10-20 ml samples were preserved in 3-4% buffered formaldehyde and processed on return to the laboratory. All of copepods were identified to genus level, other taxonomic groups - to type, class, order and family levels.
DOI: 10.6084/m9.figshare.26646900
title: Additional file 3 of Effects of epidural anesthesia on the prognosis of ovarian cancer—a systematic review and meta-analysis

description: Additional file 3: Supplementary Table 3. Including patients number of GEA and GA, EIP or EP and adminstered medicine, intravenous analgesia medicine, postoperative pain scores- Detailed comparison of GEA and GA.
DOI: 10.6084/m9.figshare.26646900.v1
title: Additional file 3 of Effects of epidural anesthesia on the prognosis of ovarian cancer—a systematic review and meta-analysis

description: Additional file 3: Supplementary Table 3. Including patients number of GEA and GA, EIP or EP and adminstered medicine, intravenous analgesia medicine, postoperative pain scores- Detailed comparison of GEA and GA.
DOI: 10.15468/dl.657am4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.250474 -33.94803, 148.250474 -33.952521, 148.25272 -33.952521, 148.25272 -33.94803, 148.250474 -33.94803))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070017-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.24669836
title: Additional file 1 of Evaluation of causal associations between interleukin-18 levels and immune-mediated inflammatory diseases: a Mendelian randomization study

description: Additional file 1: Supplementary Table S1. Strengthening the Reporting of Observational Studies in Epidemiology using Mendelian Randomization (STROBE-MR) checklist. Supplementary Table S2. Baseline characteristics of the study population. Supplementary Table S3. Information of genetic variants used as instrument variables for interleukin-18 levels. Supplementary Table S4. Information for instrument variables of IL-18 levels in each immune-mediated inflammatory disease. Supplementary Table S5. Genetic variants as instrument variables for systemic lupus erythematosus and inflammatory bowel disease with interleukin-18 levels.
DOI: 10.6084/m9.figshare.24669836.v1
title: Additional file 1 of Evaluation of causal associations between interleukin-18 levels and immune-mediated inflammatory diseases: a Mendelian randomization study

description: Additional file 1: Supplementary Table S1. Strengthening the Reporting of Observational Studies in Epidemiology using Mendelian Randomization (STROBE-MR) checklist. Supplementary Table S2. Baseline characteristics of the study population. Supplementary Table S3. Information of genetic variants used as instrument variables for interleukin-18 levels. Supplementary Table S4. Information for instrument variables of IL-18 levels in each immune-mediated inflammatory disease. Supplementary Table S5. Genetic variants as instrument variables for systemic lupus erythematosus and inflammatory bowel disease with interleukin-18 levels.
DOI: 10.1594/pangaea.552552
title: Microzooplankton biomass measured on water bottle samples at station PS58/049-3
DOI: 10.1594/pangaea.552554
title: Microzooplankton biomass measured on water bottle samples at station PS58/088-4
DOI: 10.6084/m9.figshare.24669966
title: Additional file 1 of Genetic detection of two novel LRP5 pathogenic variants in patients with familial exudative vitreoretinopathy

description: Additional file 1. The trajectory animations depict the dynamic behavior of a wildtype protein and two mutant proteins (p.Trp691Cys and p.Pro1431Argfs8) during the molecular dynamics simulation.
DOI: 10.6084/m9.figshare.24669966.v1
title: Additional file 1 of Genetic detection of two novel LRP5 pathogenic variants in patients with familial exudative vitreoretinopathy

description: Additional file 1. The trajectory animations depict the dynamic behavior of a wildtype protein and two mutant proteins (p.Trp691Cys and p.Pro1431Argfs8) during the molecular dynamics simulation.
DOI: 10.1594/pangaea.552559
title: Microzooplankton biomass measured on water bottle samples at station PS58/108-1
DOI: 10.1594/pangaea.852957
title: Underway physical oceanography and carbon dioxide measurements during Benguela Stream cruise 642B20120205

description: Cruise QC flag: B (see further details). The Fair Data Use Statement for SOCAT can be found at hdl:10013/epic.48576.d001
DOI: 10.1594/pangaea.548377
title: Documentation of sediment core M9_145 (Fig. 5)
DOI: 10.1594/pangaea.548378
title: Documentation of sediment core M9_146 (Fig. 6)
DOI: 10.1594/pangaea.548379
title: Documentation of sediment core M9_154 (Fig. 7)
DOI: 10.1594/pangaea.548382
title: Documentation of sediment core M9_174 (Fig. 11)
DOI: 10.1594/pangaea.819700
title: Physical oceanography during Maria S. Merian cruise MSM03/1
DOI: 10.1594/pangaea.219894
title: Mineral composition of clay fraction from Hole 30-288
DOI: 10.1594/pangaea.552392
title: Large protozoa abundance measured on concentrated water bottle samples at station PS58/042-5
DOI: 10.1594/pangaea.552397
title: Large protozoa abundance measured on concentrated water bottle samples at station PS58/049-5
DOI: 10.1594/pangaea.536350
title: Grain size distribution of carbonate free sediment for the time slice 6000 years B.P. of sediment cores of the northern subtropical Atlantic (App. 3)
DOI: 10.1594/pangaea.536353
title: Grain size distribution of carbonate free sediment for the time slice 12000 years B.P. of sediment cores of the northern subtropical Atlantic (App. 3)
DOI: 10.1594/pangaea.536354
title: Grain size distribution of carbonate free sediment for the time slice 18000 years B.P. of sediment cores of the northern subtropical Atlantic (App. 3)
DOI: 10.1594/pangaea.536329
title: Age model of sediment core M8_017-1 northern subtropical Atlantic (Table 3)
DOI: 10.6084/m9.figshare.24670313
title: Additional file 2 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 2: Table S1. Reference table for sncRNAs type identification in the tinyRNA pipeline.
DOI: 10.6084/m9.figshare.24670313.v1
title: Additional file 2 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 2: Table S1. Reference table for sncRNAs type identification in the tinyRNA pipeline.
DOI: 10.6084/m9.figshare.26646942
title: Additional file 3 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 3: Table S2. Reads count number for sncRNAs mapping to tRNAs. Readcount for each small RNA mapping to a tRNA was normalized using the size factors from DESeq calculated as part of the tinyRNA pipeline. Counts for individual tRNA types were obtained by summing normalized reads mapping to the 3’ half of each tRNA type.
DOI: 10.6084/m9.figshare.26646942.v1
title: Additional file 3 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 3: Table S2. Reads count number for sncRNAs mapping to tRNAs. Readcount for each small RNA mapping to a tRNA was normalized using the size factors from DESeq calculated as part of the tinyRNA pipeline. Counts for individual tRNA types were obtained by summing normalized reads mapping to the 3’ half of each tRNA type.
DOI: 10.6084/m9.figshare.26646945
title: Additional file 4 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 4: Table S3. tRNAs 3’ halves potential target genes. To identify potential target genes, small RNAs corresponding to tRNA 3’ halves were extracted from all the lines and combined into a single file, along with the annotation indicating which tRNA the sequence was derived from. This was aligned to the cell genome allowing up to 3 mismatches. Protein-coding genes overlapping with mismatched tRNA fragments were then obtained using bedtools intersect, to identify genes that were potentially targeted by tRNAs.
DOI: 10.6084/m9.figshare.26646945.v1
title: Additional file 4 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 4: Table S3. tRNAs 3’ halves potential target genes. To identify potential target genes, small RNAs corresponding to tRNA 3’ halves were extracted from all the lines and combined into a single file, along with the annotation indicating which tRNA the sequence was derived from. This was aligned to the cell genome allowing up to 3 mismatches. Protein-coding genes overlapping with mismatched tRNA fragments were then obtained using bedtools intersect, to identify genes that were potentially targeted by tRNAs.
DOI: 10.6084/m9.figshare.26646948
title: Additional file 5 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 5: Table S4. Genes involved in apoptosis in C. elegans. The list of genes playing a role in apoptosis and cell death was obtained from Wormbase (https://wormbase.org/).
DOI: 10.6084/m9.figshare.26646948.v1
title: Additional file 5 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 5: Table S4. Genes involved in apoptosis in C. elegans. The list of genes playing a role in apoptosis and cell death was obtained from Wormbase (https://wormbase.org/).
DOI: 10.6084/m9.figshare.26646957
title: Additional file 8 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 8: Table S5. Gene ontology enrichment result for high dose cisplatin. 279 significantly enriched functions with genes expression changes in high dose cisplatin condition compared to control were identified using DESeq2 and EnrichR.
DOI: 10.6084/m9.figshare.26646957.v1
title: Additional file 8 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

description: Additional file 8: Table S5. Gene ontology enrichment result for high dose cisplatin. 279 significantly enriched functions with genes expression changes in high dose cisplatin condition compared to control were identified using DESeq2 and EnrichR.