cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4k97yr
title: Occurrence Download

description: A dataset containing 1782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plethodon hoffmani Highton, 1972",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1782 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002787-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xg6w6t
title: Occurrence Download

description: A dataset containing 6353 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Grammitis Sw."
 ]
}

 The dataset includes 6353 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020284-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smassh
title: Occurrence Download

description: A dataset containing 818723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus (Linnaeus, 1766), Myocastor coypus (Molina, 1782))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 818723 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0422704-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.enw8pv
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CHN.15_1, CHN.31_1, CHN.1_1, CHN.24_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acer buergerianum var. yentangense W.P.Fang & M.Y.Fang"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023124-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqs6g6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nycticorax duboisi (Rothschild, 1907)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0378857-210914110416597/datasets/export for details.
DOI: 10.15468/dl.xhjtzo
title: Occurrence Download

description: A dataset containing 82138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "DatasetKey is A global database for the distributions of crop wild relatives",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 82138 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001836-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y29kyu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Choanoflagellatea",
 "HasCoordinate is true",
 "Country is one of (Austria)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212730-210914110416597/datasets/export for details.
DOI: 10.15468/dl.xk7ewr
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trisetum ambiguum Rúgolo & Nicora"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022739-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxbcuf
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platalea leucorodia leucorodia",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0413086-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxqajg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conjugatophyceae",
 "HasCoordinate is true",
 "Country is one of (Austria)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212735-210914110416597/datasets/export for details.
DOI: 10.15468/dl.pxwqwt
title: Occurrence Download

description: A dataset containing 197137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-30.04991 32.66238,67.62598 8.80341,72.58825 71.74961,14.56027 72.64394,-30.04991 32.66238))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus pubescens Willd."
 ]
}

 The dataset includes 197137 records from 773 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136092-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30058588
title: The chromosome-level genome assembly of <i>Tofieldia thibetica</i>

description: This project aims to construct a chromosome-level high-quality reference genome for the Tofieldia thibetica using PacBio HiFi long-read sequencing and Hi-C technologies. The study will provide important genetic resources for research on its adaptive evolution and the phylogeny of Alismatales plants.
DOI: 10.6084/m9.figshare.30058588.v1
title: The chromosome-level genome assembly of <i>Tofieldia thibetica</i>

description: This project aims to construct a chromosome-level high-quality reference genome for the Tofieldia thibetica using PacBio HiFi long-read sequencing and Hi-C technologies. The study will provide important genetic resources for research on its adaptive evolution and the phylogeny of Alismatales plants.
DOI: 10.15468/dl.58jfep
title: Occurrence Download

description: A dataset containing 4405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Natrix natrix",
 "HasCoordinate is true",
 "Country is Spain"
 ]
}

 The dataset includes 4405 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041918-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxcga4
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus sanczirii N.Ulziykh."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036392-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3tdgg
title: Occurrence Download

description: A dataset containing 1180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Vermivora peregrina (A.Wilson, 1811)"
 ]
}

 The dataset includes 1180 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004902-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fne7ua
title: Occurrence Download

description: A dataset containing 2365 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Schizothorax richardsonii (Gray, 1832)",
 "TaxonKey is Schizothorax Heckel, 1838"
 ]
 }
 ]
}

 The dataset includes 2365 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111735-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4xabe
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus dioicus I.M.Johnst."
 ]
}

 The dataset includes 160 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157405-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5tlk4w
title: Occurrence Download

description: A dataset containing 2261 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pandion haliaetus carolinensis (Gmelin, 1788)"
 ]
}

 The dataset includes 2261 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004902-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v3ry27
title: Occurrence Download

description: A dataset containing 1685 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Continent is South America",
 "Continent is North America"
 ]
 },
 "TaxonKey is Pterois volitans (Linnaeus, 1758)",
 "Year 2009-2022"
 ]
}

 The dataset includes 1685 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111739-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcav5s
title: Occurrence Download

description: A dataset containing 2082 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus diffusus Vahl"
 ]
}

 The dataset includes 2082 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157398-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9u7bp
title: Occurrence Download

description: A dataset containing 9115 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonchura malacca (Linnaeus, 1766)"
 ]
}

 The dataset includes 9115 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004902-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wcv5ws
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus dipsaceus Liebm."
 ]
}

 The dataset includes 135 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157406-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xf4nck
title: Occurrence Download

description: A dataset containing 573 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cyclopes didactylus (Linnaeus, 1758)"
 ]
}

 The dataset includes 573 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078971-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.llhjte
title: Occurrence Download

description: A dataset containing 2729 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ferrissia Walker, 1903"
 ]
}

 The dataset includes 2729 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004903-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4cye2
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ticorea pedicellata DC."
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0195473-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8u2n6
title: Occurrence Download

description: A dataset containing 434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "OccurrenceStatus is Present",
 "TaxonKey is Neogobius melanostomus (Pallas, 1814)",
 "Year 2018-2022"
 ]
}

 The dataset includes 434 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0195786-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uphbd2
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrobium stockeri T.Yukawa"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020524-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0vxwm4
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polystichum rochaleanum Glaz.; Fee",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004903-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e88bcm
title: Occurrence Download

description: A dataset containing 1568 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteronotus personatus personatus"
 ]
}

 The dataset includes 1568 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014152-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrrs6b
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia cruckshanksii Benth."
 ]
}

 The dataset includes 54 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0195472-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uzt5fu
title: Occurrence Download

description: A dataset containing 232774 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Crex crex (Linnaeus, 1758)"
 ]
}

 The dataset includes 232774 records from 394 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157413-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgqcbn
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Linum usitatissimum L.",
 "Country is Mexico"
 ]
}

 The dataset includes 26 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004903-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gya52c
title: Occurrence Download

description: A dataset containing 341 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteronotus davyi davyi"
 ]
}

 The dataset includes 341 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014163-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j3knbw
title: Occurrence Download

description: A dataset containing 1728 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chrysophyllum gonocarpum (Mart. & Eichler) Engl."
 ]
}

 The dataset includes 1728 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157410-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngvffv
title: Occurrence Download

description: A dataset containing 617 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stelis pardipes Rchb.f."
 ]
}

 The dataset includes 617 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0195474-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnpwfc
title: Occurrence Download

description: A dataset containing 54318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Laridae",
 "Country is Mexico"
 ]
}

 The dataset includes 54318 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004903-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjkkva
title: Occurrence Download

description: A dataset containing 4462 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Morus australis Poir.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4462 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0338409-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qscbar
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus dregeanus Kunth"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157420-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2r28u
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Zimbabwe",
 "TaxonKey is Striga Lour."
 ]
}

 The dataset includes 62 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051526-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfezfp
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Megaderma lyra É.Geoffroy Saint-Hilaire, 1810",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 116 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004903-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j8au3f
title: Occurrence Download

description: A dataset containing 309149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2023-08-07",
 "EventDate is less than or equal to 2023-09-06",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 309149 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004747-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnhdls
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aegla concepcionensis Schmitt, 1942"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004903-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oleljs
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lerwa lerwa lerwa"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000385-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10959928
title: UHGG v2 reference for LocalHGT

description: Genome reference for HGT analysis in human gut microbiome, specifically for LocalHGT with UHGG v2.0.2.

 

Usage:

1. Please download the file UHGG_v2.0.2_representative.fasta.gz and unzip it by gzip -d UHGG_v2.0.2_representative.fasta.gz

After that, pass the full path of the file "UHGG_v2.0.2_representative.fasta" to LocalHGT by localhgt bkp -r /path-to/UHGG_v2.0.2_representative.fastaor  localhgt event -r /path-to/UHGG_v2.0.2_representative.fasta

2. UHGG_v2.0.2_representative.fasta.fai is the index file, you can download it or not. If you download it, you should put it in the same folder as UHGG_v2.0.2_representative.fasta.If you don't download it, LocalHGT will generate it automatically.

 

Detailed instructions can be seen at LocalHGT.