cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3581004
title: Data for Morales et al. Perpendicular axes of incipient speciation in a widespread passerine with mitonuclear discordance (unpublished, submitted to Axios Review, April 2016)

description: Contents:<br>SampleInfo:Table 1. Samples screened for nuclear DNA (nDNA) and mitochondrial ND2 variation (N=69). Sample = sample identifier; mtDNA = mitolineage (mito:A or mito:B); Population = population grouping used for Hardy Weinberg Equilibrium and DAPC analyses (See Fig. 2B); ND2 accession = mitochondrial ND2 sequence NCBI accession number. IMa samples used for the three:population IMa2 model assigned to one of each three genetic clusters: N= northern, SC= southern:coastal or SI= southern:inland. The last seven columns contain STRUCTURE posterior probability assignment score (Q) for K =2 and K = 3, and the cluster to which each sample was assigned based on its posterior probability being ≥ 0.8 (K2: N= northern, S= southern and Adx = admixed; K3: N= northern, SC= southern:coastal, SI= southern:inland and Adx = admixed).Table 2. Table S2 Samples screened for mitochondrial genome (mitogenome) variation (N=32). Sample = sample identifier; mtDNA = mitolineage; Mitogenome accession = NCBI accession number<br>Hybrid_capture_probes.fasta: capture probe design in fasta format<br>Alignments:RawData: raw files of alignments produced after phasingIMa_alignments: alignments cleaned from ambiguities and trimmed to a single linked non:recombinant unit with IMgc. 400 of this alignments were selected at random for the IMa analysis <br>BLAST_OUTPUT.txt<br>SNP data:SNP_STRUCTURE_MAF0.05_MissingData_10.str: SNPs in STRUCTURE format before outlier filtering NEUTRAL_SNPs_MAF0.05_MissingData_10.str: SNP file after outlier filtering used for the DAPCA analysisRANDOM_NEUTRAL_SNP_MAF0.05_MissingData_10.str: SNP file after outlier filtering containing only one SNP per capture probe used for the STRUCTURE analysis<br>B
DOI: 10.6084/m9.figshare.3581004.v2
title: Data for Morales et al. Perpendicular axes of incipient speciation in a widespread passerine with mitonuclear discordance (unpublished, submitted to Axios Review, April 2016)

description: Contents:<br>SampleInfo:Table 1. Samples screened for nuclear DNA (nDNA) and mitochondrial ND2 variation (N=69). Sample = sample identifier; mtDNA = mitolineage (mito:A or mito:B); Population = population grouping used for Hardy Weinberg Equilibrium and DAPC analyses (See Fig. 2B); ND2 accession = mitochondrial ND2 sequence NCBI accession number. IMa samples used for the three:population IMa2 model assigned to one of each three genetic clusters: N= northern, SC= southern:coastal or SI= southern:inland. The last seven columns contain STRUCTURE posterior probability assignment score (Q) for K =2 and K = 3, and the cluster to which each sample was assigned based on its posterior probability being ≥ 0.8 (K2: N= northern, S= southern and Adx = admixed; K3: N= northern, SC= southern:coastal, SI= southern:inland and Adx = admixed).Table 2. Table S2 Samples screened for mitochondrial genome (mitogenome) variation (N=32). Sample = sample identifier; mtDNA = mitolineage; Mitogenome accession = NCBI accession number<br>Hybrid_capture_probes.fasta: capture probe design in fasta format<br>Alignments:RawData: raw files of alignments produced after phasingIMa_alignments: alignments cleaned from ambiguities and trimmed to a single linked non:recombinant unit with IMgc. 400 of this alignments were selected at random for the IMa analysis <br>BLAST_OUTPUT.txt<br>SNP data:SNP_STRUCTURE_MAF0.05_MissingData_10.str: SNPs in STRUCTURE format before outlier filtering NEUTRAL_SNPs_MAF0.05_MissingData_10.str: SNP file after outlier filtering used for the DAPCA analysisRANDOM_NEUTRAL_SNP_MAF0.05_MissingData_10.str: SNP file after outlier filtering containing only one SNP per capture probe used for the STRUCTURE analysis<br>B
DOI: 10.6084/m9.figshare.3581004.v1
title: Data for Morales et al. Perpendicular axes of incipient speciation in a widespread passerine with mitonuclear discordance

description: Contents:<br>SampleInfo:Table 1. Samples screened for nuclear DNA (nDNA) and mitochondrial ND2 variation (N=69). Sample = sample identifier; mtDNA = mitolineage (mito:A or mito:B); Population = population grouping used for Hardy Weinberg Equilibrium and DAPC analyses (See Fig. 2B); ND2 accession = mitochondrial ND2 sequence NCBI accession number. IMa samples used for the three:population IMa2 model assigned to one of each three genetic clusters: N= northern, SC= southern:coastal or SI= southern:inland. The last seven columns contain STRUCTURE posterior probability assignment score (Q) for K =2 and K = 3, and the cluster to which each sample was assigned based on its posterior probability being ≥ 0.8 (K2: N= northern, S= southern and Adx = admixed; K3: N= northern, SC= southern:coastal, SI= southern:inland and Adx = admixed).Table 2. Table S2 Samples screened for mitochondrial genome (mitogenome) variation (N=32). Sample = sample identifier; mtDNA = mitolineage; Mitogenome accession = NCBI accession number<br>Hybrid_capture_probes.fasta: capture probe design in fasta format<br>Alignments:RawData: raw files of alignments produced after phasingIMa_alignments: alignments cleaned from ambiguities and trimmed to a single linked non:recombinant unit with IMgc. 400 of this alignments were selected at random for the IMa analysis <br>BLAST_OUTPUT.txt<br>SNP data:SNP_STRUCTURE_MAF0.05_MissingData_10.str: SNPs in STRUCTURE format before outlier filtering NEUTRAL_SNPs_MAF0.05_MissingData_10.str: SNP file after outlier filtering used for the DAPCA analysisRANDOM_NEUTRAL_SNP_MAF0.05_MissingData_10.str: SNP file after outlier filtering containing only one SNP per capture probe used for the STRUCTURE analysis<br>B
DOI: 10.6084/m9.figshare.3580989
title: Structural models of active and inactive structures of human High mobility group box 1 (HMGB1)

description: Structural models for the modelled HMGB1,HMGB1 without disulphide bond C23 and C45, HMGB1C23A, HMGB1C45A, HMGB1C106A, HMGB1SO3H.
DOI: 10.17632/h6rbr6d6n2.1
title: A focal mechanism catalog for Ridgecrest sequence derived with deep learning algorithms

description: Data format of the focal mechanism catalog in the Ridgecrest area Column Information 1 Year 2 Month 3 Day 4 Hour 5 Minute 6 Second 7 Event ID 8 Latitude 9 Longitude 10 Depth 11 Magnitude 12 Strike 13 Dip 14 Rake 15 1st nodal plane uncertainty 16 2nd nodal plane uncertainty 17 Number of polarities 18 Polarity misfit 19 Number of S/P amplitude ratios 20 Average log10(S/P) amplitude ratio misfit 21 Focal mechanism quality 22 Probability of solution close to real solution 23 Azimuth gap 24 Take-off angle gap 25 Station distribution ratio (STDR)
DOI: 10.6084/m9.figshare.3580989.v2
title: Structural models of active and inactive structures of human High mobility group box 1 (HMGB1)

description: Structural models for the modelled HMGB1,HMGB1 without disulphide bond C23 and C45, HMGB1C23A, HMGB1C45A, HMGB1C106A, HMGB1SO3H.
DOI: 10.6084/m9.figshare.3580989.v3
title: Structural models of active and inactive structures of human High mobility group box 1 (HMGB1)

description: Structural models for the modelled HMGB1,HMGB1 without disulphide bond C23 and C45, HMGB1C23A, HMGB1C45A, HMGB1C106A, HMGB1SO3H.
DOI: 10.17632/k5j7j7j7jp.1
title: A Sequential Algorithm for Multidisciplinary Constrained Optimization of Hypersonic Vehicles Structures in Thermal Environment

description: The raw data of the paper titled 'A Sequential Algorithm for Multidisciplinary Constrained Optimization of Hypersonic Vehicles Structures in Thermal Environment'.
DOI: 10.6084/m9.figshare.3580953
title: Hyperthermia and radiotherapy with or without chemotherapy in locally advanced cervical cancer: a systematic review with conventional and network meta-analyses

description: <b>Purpose:</b> A systematic review with conventional and network meta-analyses (NMA) was conducted to examine the outcomes of loco-regional hyperthermia (HT) with radiotherapy (RT) and/or chemotherapy (CT) in locally advanced cervix cancer, IIB–IVA (LACC). <b>Methods and materials:</b> A total of 217 abstracts were screened from five databases and reported as per PRISMA guidelines. Only randomised trials with HT and RT ± CT were considered. The outcomes evaluated were complete response (CR), long-term loco-regional control (LRC), patients alive, acute and late grade III/IV toxicities. <b>Results:</b> Eight articles were finally retained. Six randomised trials with HTRT (<i>n</i> = 215) vs. RT (<i>n</i> = 212) were subjected to meta-analysis. The risk difference for achieving CR and LRC was greater by 22% (<i>p</i> p p = .001). No other end points were reported. Bayesian NMA, incorporating 13 studies (<i>n</i> = 1000 patients) for CR and 12 studies for patients alive (<i>n</i> = 807 patients), comparing HTCTRT, HTRT, CTRT and RT alone, was conducted. The pairwise comparison of various groups showed that HTRTCT was the best option for both CR and patient survival. This was also evident on ranking treatment modalities based on the “surface under cumulative ranking” values. <b>Conclusions:</b> In LACC, HTRT demonstrates a therapeutic advantage over RT without significant acute or late morbidities. On NMA, HTCTRT appears promising, but needs further confirmation through prospective randomised trials.
DOI: 10.6084/m9.figshare.3580953.v1
title: Hyperthermia and radiotherapy with or without chemotherapy in locally advanced cervical cancer: a systematic review with conventional and network meta-analyses

description: <b>Purpose:</b> A systematic review with conventional and network meta-analyses (NMA) was conducted to examine the outcomes of loco-regional hyperthermia (HT) with radiotherapy (RT) and/or chemotherapy (CT) in locally advanced cervix cancer, IIB–IVA (LACC). <b>Methods and materials:</b> A total of 217 abstracts were screened from five databases and reported as per PRISMA guidelines. Only randomised trials with HT and RT ± CT were considered. The outcomes evaluated were complete response (CR), long-term loco-regional control (LRC), patients alive, acute and late grade III/IV toxicities. <b>Results:</b> Eight articles were finally retained. Six randomised trials with HTRT (<i>n</i> = 215) vs. RT (<i>n</i> = 212) were subjected to meta-analysis. The risk difference for achieving CR and LRC was greater by 22% (<i>p</i> p p = .001). No other end points were reported. Bayesian NMA, incorporating 13 studies (<i>n</i> = 1000 patients) for CR and 12 studies for patients alive (<i>n</i> = 807 patients), comparing HTCTRT, HTRT, CTRT and RT alone, was conducted. The pairwise comparison of various groups showed that HTRTCT was the best option for both CR and patient survival. This was also evident on ranking treatment modalities based on the “surface under cumulative ranking” values. <b>Conclusions:</b> In LACC, HTRT demonstrates a therapeutic advantage over RT without significant acute or late morbidities. On NMA, HTCTRT appears promising, but needs further confirmation through prospective randomised trials.
DOI: 10.6084/m9.figshare.3580872
title: Willamette Valley Seedling Demography 2010/2011

description: Demographic data on seedling establishment and survival for 4 species of conservation concern in the Willamette Valley, Oregon, USA.
DOI: 10.6084/m9.figshare.3580872.v2
title: Willamette Valley Seedling Demography 2010/2011

description: Demographic data on seedling establishment and survival for 4 species of conservation concern in the Willamette Valley, Oregon, USA.
DOI: 10.6084/m9.figshare.3580872.v1
title: Willamette Valley Seedling Demography 2010/2011

description: Demographic data on seedling establishment and survival for 4 species of conservation concern in the Willamette Valley, Oregon, USA.
DOI: 10.6084/m9.figshare.3580803
title: Transfer of POPs to Grass Shrimp Following Ingestion of PAH-Coated Microplastic

description: This study investigated the transfer of fluoranthene, a PAH, from fluoranthene-coated microplastic to grass shrimp (<i>Palaemonetes pugio) </i>following ingestion. Grass shrimp were exposed to fluoranthene-coated microspheres. Amount of fluoranthene coating the microspheres was quantified pre-exposure and post-exposure. Fluoranthene concentration of the water in which the shrimp were held during exposure was also determined following exposure. Control shrimp were exposed to un-coated microspheres. Fluoranthene concentration of the water in which the control shrimp were held during exposure was also determined following exposure.To determine transfer of fluoranthene to grass shrimp following uptake in the gills, shrimp were fed brine shrimp prior to exposure. This prevented the grass shrimp from ingesting the fluoranthene-coated microspheres.
DOI: 10.6084/m9.figshare.3580803.v1
title: Transfer of POPs to Grass Shrimp Following Ingestion of PAH-Coated Microplastic

description: This study investigated the transfer of fluoranthene, a PAH, from fluoranthene-coated microplastic to grass shrimp (<i>Palaemonetes pugio) </i>following ingestion. Grass shrimp were exposed to fluoranthene-coated microspheres. Amount of fluoranthene coating the microspheres was quantified pre-exposure and post-exposure. Fluoranthene concentration of the water in which the shrimp were held during exposure was also determined following exposure. Control shrimp were exposed to un-coated microspheres. Fluoranthene concentration of the water in which the control shrimp were held during exposure was also determined following exposure.To determine transfer of fluoranthene to grass shrimp following uptake in the gills, shrimp were fed brine shrimp prior to exposure. This prevented the grass shrimp from ingesting the fluoranthene-coated microspheres.
DOI: 10.6084/m9.figshare.3580800
title: Open Access Journal copyright licensing template v1.0 plain text

description: Plain text version.<br>Template for Open Access journal to use for authors to retain rights and apply CC BY licence to published outputs.<br>Designed for use in online submission process and/or 'About' pages for an open access journal, e.g. those using Open Journal Systems (OJS) software.<br>Includes brief overview of agreement in bullet points then the full agreement.
DOI: 10.6084/m9.figshare.3580794
title: Open Access Journal copyright licensing template v1.0

description: PDF and Word versions.<br>Template for Open Access journal to use for authors to retain rights and apply CC BY licence to published outputs.<br>This PDF/Word version was designed to be completed separately from online submission process, i.e. it's a PDF that can be printed out to fill out relevant fields and with a place to sign it.<br>Includes brief overview of agreement in bullet points then the full agreement.
DOI: 10.6084/m9.figshare.3580794.v2
title: Open Access Journal copyright licensing template v1.0

description: PDF and Word versions.<br>Template for Open Access journal to use for authors to retain rights and apply CC BY licence to published outputs.<br>This PDF/Word version was designed to be completed separately from online submission process, i.e. it's a PDF that can be printed out to fill out relevant fields and with a place to sign it.<br>Includes brief overview of agreement in bullet points then the full agreement.
DOI: 10.6084/m9.figshare.3580791
title: Uptake and Retention of Microplastic Particles by Adult Grass Shrimp

description: This study aimed to quantify the uptake and retention of microplastic particles in the gut and gills of adult daggerblade grass shrimp, <i>Palaemonetes pugio</i>. Polystyrene, polypropylene, and polyethylene microspheres were tested as well as polypropylene microfragments and polypropylene microfibers. Particle size fractions ranged from 30 microns to 165 microns. Grass shrimp were exposed to microplastic particles at a concentration of 20,000 particles/400 mL. Exposure was followed by a 96 hour depuration period, and the average clearance time (hr) was calculated.
DOI: 10.17632/b3z32xsk9z.1
title: Supplementary: Cosmetic Procedure Use as a Type of Substance-Related Disorder

description: Supplementary figures and tables to "Cosmetic Procedure Use as a Type of Substance-Related Disorder" published in the Journal of American Academy of Dermatology.
DOI: 10.6084/m9.figshare.3580776
title: Tweets using #ESA2016 hashtag

description: Most recent ~12k tweets using the #ESA2016 hashtag, as of 4:30 PM on 8/13/2016.
DOI: 10.17632/8mf35ntz9z.1
title: Severe reactive astrocytes precipitate pathological hallmarks of Alzheimer’s disease via H2O2-production
DOI: 10.6084/m9.figshare.3580776.v1
title: Tweets using #ESA2016 hashtag

description: Most recent ~12k tweets using the #ESA2016 hashtag, as of 4:30 PM on 8/13/2016.
DOI: 10.6084/m9.figshare.3580767
title: plos_rdpsp — kopia.csv

description: The database on renal failure prevalence among post ischemic stroke subjects in Pomerania district in Poland
DOI: 10.6084/m9.figshare.3580767.v1
title: plos_rdpsp — kopia.csv

description: The database on renal failure prevalence among post ischemic stroke subjects in Pomerania district in Poland
DOI: 10.6084/m9.figshare.3580752
title: ESA2016wordcount.csv

description: A scape of words by frequency in primary tweets from #ESA2016 meeting. http://esa.org/ftlauderdale/<br>All code here in GitHub: https://cjlortie.github.io/esa2016.tweets/<br>Used r and 'tm' package to do count.
DOI: 10.6084/m9.figshare.3580752.v1
title: ESA2016wordcount.csv

description: A scape of words by frequency in primary tweets from #ESA2016 meeting. http://esa.org/ftlauderdale/<br>All code here in GitHub: https://cjlortie.github.io/esa2016.tweets/<br>Used r and 'tm' package to do count.
DOI: 10.34808/jd49-fc67
title: Burkitt lymphoma, NOS - Female, 19 - Tissue image [5190730046642371]

description: This is the histopathological image of TONSIL tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 19Clinical description: Tumor of the palatine tonsil.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: MATURE B-CELL LYMPHOMASDiagnosis: Burkitt lymphoma, NOSResult of the histopathological examination: Burkitt lymphoma (BL).
IHC: CD20(+), CD10(+), c myc(+), bcl2(-), bcl6(weak+),TdT(-), CD30(-), CD138(-), p53(-), CD23(-). CD5(-), CyclinD1(-), Ki67: 99%.Sample:Material: FFPECollecting method: Surgical specimenTopography: LIP, ORAL CAVITY AND PHARYNXOrgan: TONSILTissue: Palatine tonsilType of staining: positive/IHCStaining: Not applicableAntibody: BCL6Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/y9amcn
title: Myodes glareolus - 71826, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-02-23, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/6tw4-w170
title: Mantle cell lymphoma - Male, 65 - Tissue image [5190730046641981]

description: This is the histopathological image of HEMATOPOIETIC AND RETICULOENDOTHELIAL SYSTEMS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 65Clinical description: Splenomegaly.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: MATURE B-CELL LYMPHOMASDiagnosis: Mantle cell lymphomaResult of the histopathological examination: Mantle cell lymphoma.
IHC: CD20(+), CD3(-), bcl-2(+), bcl-6(-), CD5(+), CD23(-), Cyclin D1(+), CD10(-), Ki67 20%.Sample:Material: FFPECollecting method: Surgical specimenTopography: HEMATOPOIETIC AND RETICULOENDOTHELIAL SYSTEMSOrgan: HEMATOPOIETIC AND RETICULOENDOTHELIAL SYSTEMSTissue: SpleenType of staining: positive/IHCStaining: Not applicableAntibody: CD 3Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/t2s6-4988
title: Diffuse large B-cell lymphoma, NOS - Male, 55 - Tissue image [503073001765601]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 55Clinical description: Enlarged lymph nodes of the groin.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: MATURE B-CELL LYMPHOMASDiagnosis: Diffuse large B-cell lymphoma, NOSResult of the histopathological examination: Diffuse large B-cell lymphoma, NOS (DLBCL, NOS).
IHC: CD20+, CD3 (-), CD5 (-), bcl2 +/-, bcl6 +/-, CD10 (-), CD30 (-), CD15 (-), CD79a+,CD34 (-), CD68 (-), EMA weakly+, EBER (-), Ki67  90%, MUM1 +, cMyc (-), ALK1 (-).Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Inguinal lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: CD 10Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/pxyk22
title: Myodes glareolus - 12602, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-08-14, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/qhxb-pe82
title: Edwards' syndrome, unspecified - Female, 0 - Tissue image [4130730018863651]

description: This is the histopathological image of BRONCHUS AND LUNG tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 0Clinical description: Prematurity. Edwards syndrome. Microstomy.
Atresia of the esophagus. Tracheoesophageal fistula.
Ventricular septal defect (VSD). Aortic stenosis (CoA).
PDA, PFO.
Survived  2 days.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XVII - Congenital malformations, deformations and chromosomal abnormalitiesDiagnosis: Edwards' syndrome, unspecifiedResult of the histopathological examination: Samples from immature lungs with areas of atelectasis, massive congestion, haemorrhages in the lumen of the alveoli and bronchi, formation of blood clots and elements of aspirated content.Sample:Material: FFPECollecting method: Autopsy specimenTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: BRONCHUS AND LUNGTissue: Lung, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk