cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19229762
title: Coordinatewise Gaussianization: Theories and Applications

description: In statistical analysis, researchers often perform coordinatewise Gaussianization such that each variable is marginally normal. The normal score transformation is a method for coordinatewise Gaussianization and is widely used in statistics, econometrics, genetics and other areas. However, few studies exist on the theoretical properties of the normal score transformation, especially in high-dimensional problems where the dimension p diverges with the sample size n. In this article, we show that the normal score transformation uniformly converges to its population counterpart even when log p=o(n/ log n). Our result can justify the normal score transformation prior to any downstream statistical method to which the theoretical normal transformation is beneficial. The same results are established for the Winsorized normal transformation, another popular choice for coordinatewise Gaussianization. We demonstrate the benefits of coordinatewise Gaussianization by studying its applications to the Gaussian copula model, the nearest shrunken centroids classifier and distance correlation. The benefits are clearly shown in theory and supported by numerical studies. Moreover, we also point out scenarios where coordinatewise Gaussinization does not help and even causes damages. We offer a general recommendation on how to use coordinatewise Gaussianization in applications. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.19229762.v1
title: Coordinatewise Gaussianization: Theories and Applications

description: In statistical analysis, researchers often perform coordinatewise Gaussianization such that each variable is marginally normal. The normal score transformation is a method for coordinstewise Gaussianization and is widely used in statistics, econometrics, genetics and other areas. However, few studies exist on the theoretical properties of the normal score transformation, especially in high-dimensional problems where the dimension <i>p</i> diverges with the sample size <i>n</i>. In this paper, we show that the normal score transformation uniformly converges to its population counterpart even when log p=o(n/ log n). Our result can justify the normal score transformation prior to any downstream statistical method to which the theoretical normal transformation is beneficial. The same results are established for the Winsorized normal transformation, another popular choice for coordinatewise Gaussianization. We demonstrate the benefits of coordinatewise Gaussianization by studying its applications to the Gaussian copula model, the nearest shrunken centroids classifier and distance correlation. The benefits are clearly shown in theory and supported by numerical studies. Moreover, we also point out scenarios where coordinatewise Gaussinization does not help and even causes damages. We offer a general recommendation on how to use coordinatewise Gaussianization in applications. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.12414002
title: Additional file 1 of Targeted-gene sequencing of an undifferentiated gallbladder carcinoma: a case report

description: Additional file 1. The 102 somatic mutations and corresponding signaling pathway in the tubular carcinoma component of the gallbladder carcinoma.
DOI: 10.6084/m9.figshare.19229762.v2
title: Coordinatewise Gaussianization: Theories and Applications

description: In statistical analysis, researchers often perform coordinatewise Gaussianization such that each variable is marginally normal. The normal score transformation is a method for coordinatewise Gaussianization and is widely used in statistics, econometrics, genetics and other areas. However, few studies exist on the theoretical properties of the normal score transformation, especially in high-dimensional problems where the dimension p diverges with the sample size n. In this article, we show that the normal score transformation uniformly converges to its population counterpart even when log p=o(n/ log n). Our result can justify the normal score transformation prior to any downstream statistical method to which the theoretical normal transformation is beneficial. The same results are established for the Winsorized normal transformation, another popular choice for coordinatewise Gaussianization. We demonstrate the benefits of coordinatewise Gaussianization by studying its applications to the Gaussian copula model, the nearest shrunken centroids classifier and distance correlation. The benefits are clearly shown in theory and supported by numerical studies. Moreover, we also point out scenarios where coordinatewise Gaussinization does not help and even causes damages. We offer a general recommendation on how to use coordinatewise Gaussianization in applications. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.19229762.v3
title: Coordinatewise Gaussianization: Theories and Applications

description: In statistical analysis, researchers often perform coordinatewise Gaussianization such that each variable is marginally normal. The normal score transformation is a method for coordinatewise Gaussianization and is widely used in statistics, econometrics, genetics and other areas. However, few studies exist on the theoretical properties of the normal score transformation, especially in high-dimensional problems where the dimension p diverges with the sample size n. In this article, we show that the normal score transformation uniformly converges to its population counterpart even when log p=o(n/ log n). Our result can justify the normal score transformation prior to any downstream statistical method to which the theoretical normal transformation is beneficial. The same results are established for the Winsorized normal transformation, another popular choice for coordinatewise Gaussianization. We demonstrate the benefits of coordinatewise Gaussianization by studying its applications to the Gaussian copula model, the nearest shrunken centroids classifier and distance correlation. The benefits are clearly shown in theory and supported by numerical studies. Moreover, we also point out scenarios where coordinatewise Gaussinization does not help and even causes damages. We offer a general recommendation on how to use coordinatewise Gaussianization in applications. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.12414002.v1
title: Additional file 1 of Targeted-gene sequencing of an undifferentiated gallbladder carcinoma: a case report

description: Additional file 1. The 102 somatic mutations and corresponding signaling pathway in the tubular carcinoma component of the gallbladder carcinoma.
DOI: 10.5281/zenodo.10672688
title: IODP Expedition 393 Bulk Density (GRA)

description: Gamma ray attenuation (GRA) data were acquired using a Cs-137 collimated source and a sodium iodide (thallium), or NaI(Tl), scintillation detector. The signal was calibrated using water and aluminum standards to provide a proxy for bulk density. This measurement was performed by a sensor mounted on either the Whole-Round Multisensor Logger (WRMSL) or the Special Task Multisensor Logger (STMSL); which track was used for a given data set is indicated in the data.
DOI: 10.5281/zenodo.10672689
title: IODP Expedition 393 Bulk Density (GRA)

description: Gamma ray attenuation (GRA) data were acquired using a Cs-137 collimated source and a sodium iodide (thallium), or NaI(Tl), scintillation detector. The signal was calibrated using water and aluminum standards to provide a proxy for bulk density. This measurement was performed by a sensor mounted on either the Whole-Round Multisensor Logger (WRMSL) or the Special Task Multisensor Logger (STMSL); which track was used for a given data set is indicated in the data.
DOI: 10.6084/m9.figshare.7171151
title: Additional file 12: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: 72,276 lncRNA sequences identified in tilapia genome.rar. (FNA 56998 kb)
DOI: 10.6084/m9.figshare.7171151.v1
title: Additional file 12: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: 72,276 lncRNA sequences identified in tilapia genome.rar. (FNA 56998 kb)
DOI: 10.6084/m9.figshare.7171169
title: Additional file 1: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S1. Summary information for RNAseq data and Transcriptome Shotgun Assembly (TSA) databases used in this study. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7171169.v1
title: Additional file 1: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S1. Summary information for RNAseq data and Transcriptome Shotgun Assembly (TSA) databases used in this study. (XLSX 18 kb)
DOI: 10.5281/zenodo.10672683
title: IODP Expedition 393 Gas safety report

description: This composite report returns data from two different gas chromatograph configurations (GC3 and NGA). Each row combines data from several measurements made on the same sample at the same time for a particular headspace or vacutainer sample. If data do not exist for a particular expedition, the column does not appear. Gas samples were measured by gas chromatography and either flame ionization detection (GC-FID) or thermal conductivity detection (GC-TCD). Reported analytes may include methane, ethane, ethene, propane, propene, n-butane, i-butane, n-pentane, i-pentane, n-hexane, i-hexane, n-heptane, i-heptane, nitrogen, oxygen, carbon monoxide, carbon dioxide, and hydrogen sulfide. When data are available, methane to (ethane + ethene) ratio (C1/C2�ratio) is reported. To identify individual samples and tests, see each separate analysis (GC3, NGAFID, and/or NGATCD).
DOI: 10.5281/zenodo.10672684
title: IODP Expedition 393 Gas safety report

description: This composite report returns data from two different gas chromatograph configurations (GC3 and NGA). Each row combines data from several measurements made on the same sample at the same time for a particular headspace or vacutainer sample. If data do not exist for a particular expedition, the column does not appear. Gas samples were measured by gas chromatography and either flame ionization detection (GC-FID) or thermal conductivity detection (GC-TCD). Reported analytes may include methane, ethane, ethene, propane, propene, n-butane, i-butane, n-pentane, i-pentane, n-hexane, i-hexane, n-heptane, i-heptane, nitrogen, oxygen, carbon monoxide, carbon dioxide, and hydrogen sulfide. When data are available, methane to (ethane + ethene) ratio (C1/C2�ratio) is reported. To identify individual samples and tests, see each separate analysis (GC3, NGAFID, and/or NGATCD).
DOI: 10.5281/zenodo.10672681
title: IODP Expedition 393 Core drilling summary

description: Report includes detailed drilling data for each core: pump(s) used, mud pumped, strokes, shear pins/pressure, bit size/rotation, weight on bit, top drive torque, rate of penetration, core jams, winch and wirelines, core catcher/shoe and barrel, and whether core orientation, drillover, formation temperature, tracers, liners were used.
DOI: 10.5281/zenodo.10672682
title: IODP Expedition 393 Core drilling summary

description: Report includes detailed drilling data for each core: pump(s) used, mud pumped, strokes, shear pins/pressure, bit size/rotation, weight on bit, top drive torque, rate of penetration, core jams, winch and wirelines, core catcher/shoe and barrel, and whether core orientation, drillover, formation temperature, tracers, liners were used.
DOI: 10.6084/m9.figshare.7171199
title: Additional file 4: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S2. Summary for the top hub genes with TOM values more than 0.5 in modules from 12 tissue RNAseq dataset. (XLSX 2060 kb)
DOI: 10.6084/m9.figshare.7171199.v1
title: Additional file 4: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S2. Summary for the top hub genes with TOM values more than 0.5 in modules from 12 tissue RNAseq dataset. (XLSX 2060 kb)
DOI: 10.6073/pasta/391bd996db5959fe1dc15d24e3a1b61a
title: Jornada Basin LTER: Wireless meteorological station at NPP P-SMAL site: 1-second summary precipitation data: 2017 - ongoing

description: 1-second summary precipitation data at NPP P-SMAL met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER NPP P-SMAL site.. This climate station is operated by the Jornada LTER Program. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset. Reference the package i.d.'s knb-lter-jrn.210437026, knb-lter-jrn.210437041, and knb-lter-jrn.210437056 for the NPP P-SMAL met station 30 minute, hourly, and daily summary datasets, respectively. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.7171211
title: Additional file 1: of Identification and functional characterization of intermediate-size non-coding RNAs in maize

description: Information of all novel ncRNAs that being identified in maize inbred line Chang 7â 2. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.7171211.v1
title: Additional file 1: of Identification and functional characterization of intermediate-size non-coding RNAs in maize

description: Information of all novel ncRNAs that being identified in maize inbred line Chang 7â 2. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.7171217
title: Additional file 6: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S3. Overrepresentation test of the lncRNA-associated mRNA geneset in Pantherdb database. Annotation was conducted using PANTHER version 13.1 Released 2018-02-03, Fisherâ s exact with FDR multiple test correction and false discovery rateâ &lt;â 0.05, using Danio rerio (REF) as background geneset. (ODS 22 kb)
DOI: 10.6084/m9.figshare.7171217.v1
title: Additional file 6: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S3. Overrepresentation test of the lncRNA-associated mRNA geneset in Pantherdb database. Annotation was conducted using PANTHER version 13.1 Released 2018-02-03, Fisherâ s exact with FDR multiple test correction and false discovery rateâ &lt;â 0.05, using Danio rerio (REF) as background geneset. (ODS 22 kb)
DOI: 10.6084/m9.figshare.7171229
title: Additional file 7: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S4. Primer information used in the validation of DE transcript expression by qRT-PCR. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7171229.v1
title: Additional file 7: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S4. Primer information used in the validation of DE transcript expression by qRT-PCR. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7171235
title: Additional file 8: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S5. Summary for the DE lncRNA genes detected in tilapia in response to cold, salt and hypoxia stress. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.7171235.v1
title: Additional file 8: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S5. Summary for the DE lncRNA genes detected in tilapia in response to cold, salt and hypoxia stress. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.7171247
title: Additional file 9: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S6. Summary for tissues-specific DE lncRNA genes in tilapia. (XLSX 174 kb)
DOI: 10.6084/m9.figshare.7171247.v1
title: Additional file 9: of Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

description: Table S6. Summary for tissues-specific DE lncRNA genes in tilapia. (XLSX 174 kb)
DOI: 10.6084/m9.figshare.12414128
title: Additional file 2 of Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

description: Additional file 2. Oligonucleotides, yeast strains, and plasmids.
DOI: 10.6084/m9.figshare.12414128.v1
title: Additional file 2 of Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

description: Additional file 2. Oligonucleotides, yeast strains, and plasmids.
DOI: 10.6084/m9.figshare.12414134
title: Additional file 3 of Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

description: Additional file 3. Mapping statistics for TSS-seq, MNase-seq, and ChIP-exo libraries.
DOI: 10.6084/m9.figshare.12414134.v1
title: Additional file 3 of Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

description: Additional file 3. Mapping statistics for TSS-seq, MNase-seq, and ChIP-exo libraries.
DOI: 10.6084/m9.figshare.12414137
title: Additional file 4 of Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

description: Additional file 4. Genomic positions and attributes of promoters analyzed.
DOI: 10.6084/m9.figshare.12414137.v1
title: Additional file 4 of Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

description: Additional file 4. Genomic positions and attributes of promoters analyzed.
DOI: 10.5281/zenodo.10672679
title: IODP Expedition 393 Formation temperature

description: Formation temperature was measured by the advanced piston corer temperature tool (APCT-3), Sediment Temperature Tool (SET), or sediment temperature pressure tool (SETP) and reduced to in situ temperature and (for SETP) pressure estimates. These data are compiled per instrument run and assigned to a core (the core cut with the APCT-3 cutting shoe or the core following the SET deployment).
DOI: 10.5281/zenodo.10672680
title: IODP Expedition 393 Formation temperature

description: Formation temperature was measured by the advanced piston corer temperature tool (APCT-3), Sediment Temperature Tool (SET), or sediment temperature pressure tool (SETP) and reduced to in situ temperature and (for SETP) pressure estimates. These data are compiled per instrument run and assigned to a core (the core cut with the APCT-3 cutting shoe or the core following the SET deployment).
DOI: 10.6084/m9.figshare.19395753
title: Additional file 7 of Urinary metabolomics reveals the biological characteristics of early pregnancy in pigs

description: Additional file 7. Table S7. Expression profiles(0-7).
DOI: 10.6084/m9.figshare.19395753.v1
title: Additional file 7 of Urinary metabolomics reveals the biological characteristics of early pregnancy in pigs

description: Additional file 7. Table S7. Expression profiles(0-7).
DOI: 10.6084/m9.figshare.5598424
title: Early–Middle Ordovician volcanism along the eastern margin of the Xing’an Massif, Northeast China: constraints on the suture location between the Xing’an and Songnen–Zhangguangcai Range massifs

description: We present new zircon U–Pb and Hf isotopic as well as whole-rock geochemical data for volcanic rocks from the eastern margin of the Xing’an Massif, Northeast China, in order to further our understanding of the suture location between the Xing’an and Songnen–Zhangguangcai Range massifs. Zircon secondary ion mass spectrometry U–Pb dating indicates that the volcanic rocks formed during the Early–Middle Ordovician (473–463 Ma). Compared with the coeval Moguqi basalts (rare earth element [REE] = 171–183 ppm; εHf<sub>(t)</sub> = +0.3 to +2.7; T<sub>DM1</sub> = 1074–977 Ma), the Duobaoshan andesites exhibit lower overall REE abundances (109–131 ppm) with relatively high heavy REE contents, stronger high-field-strength element depletion, higher εHf<sub>(t)</sub> values (+13.0 to +14.8), and much younger T<sub>DM1</sub> ages (559–484 Ma). This suggests that the primary magma for the andesites was generated by the partial melting of a relatively depleted mantle wedge that was metasomatized by subduction-related fluids. The primary magma for the basalts in the Moguqi area was probably derived from the partial melting of a relatively enriched lithospheric mantle that was also modified by fluids sourced from a subducted slab. These interpretations suggest that the andesites in Duobaoshan formed in a newly accreted island arc setting, whereas the coeval basalts in Moguqi formed along an active continental margin. We therefore attribute the Early–Middle Ordovician volcanism along the eastern margin of the Xing’an Massif to the northwestward subduction of the Nenjiang–Heihe oceanic plate beneath the Xing’an Massif. Furthermore, considering coeval igneous activity in the southern parts of the Xing’an Massif, we suggest that a magmatic arc existed along the margin of the Xing’an Massif in the early Palaeozoic (490–420 Ma). We conclude that the location of the suture between the Xing’an and Songnen–Zhangguangcai Range massifs runs from Airgin Sum, via south of Xilinhot, to Ulanhot, Moguqi, Nenjiang, and finally Heihe.
DOI: 10.6084/m9.figshare.5598424.v1
title: Early–Middle Ordovician volcanism along the eastern margin of the Xing’an Massif, Northeast China: constraints on the suture location between the Xing’an and Songnen–Zhangguangcai Range massifs

description: We present new zircon U–Pb and Hf isotopic as well as whole-rock geochemical data for volcanic rocks from the eastern margin of the Xing’an Massif, Northeast China, in order to further our understanding of the suture location between the Xing’an and Songnen–Zhangguangcai Range massifs. Zircon secondary ion mass spectrometry U–Pb dating indicates that the volcanic rocks formed during the Early–Middle Ordovician (473–463 Ma). Compared with the coeval Moguqi basalts (rare earth element [REE] = 171–183 ppm; εHf<sub>(t)</sub> = +0.3 to +2.7; T<sub>DM1</sub> = 1074–977 Ma), the Duobaoshan andesites exhibit lower overall REE abundances (109–131 ppm) with relatively high heavy REE contents, stronger high-field-strength element depletion, higher εHf<sub>(t)</sub> values (+13.0 to +14.8), and much younger T<sub>DM1</sub> ages (559–484 Ma). This suggests that the primary magma for the andesites was generated by the partial melting of a relatively depleted mantle wedge that was metasomatized by subduction-related fluids. The primary magma for the basalts in the Moguqi area was probably derived from the partial melting of a relatively enriched lithospheric mantle that was also modified by fluids sourced from a subducted slab. These interpretations suggest that the andesites in Duobaoshan formed in a newly accreted island arc setting, whereas the coeval basalts in Moguqi formed along an active continental margin. We therefore attribute the Early–Middle Ordovician volcanism along the eastern margin of the Xing’an Massif to the northwestward subduction of the Nenjiang–Heihe oceanic plate beneath the Xing’an Massif. Furthermore, considering coeval igneous activity in the southern parts of the Xing’an Massif, we suggest that a magmatic arc existed along the margin of the Xing’an Massif in the early Palaeozoic (490–420 Ma). We conclude that the location of the suture between the Xing’an and Songnen–Zhangguangcai Range massifs runs from Airgin Sum, via south of Xilinhot, to Ulanhot, Moguqi, Nenjiang, and finally Heihe.