cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19753477
title: Supplementary Material for: Fenretinide Reduces Intestinal Mucin-2-Positive Goblet Cells in Chronic Alcohol Abuse

description: <b><i>Introduction:</i></b> Alcohol-induced thickening of the gut mucosal layer and increased expression of goblet cell gel-forming mucins, such as mucin-2 (<i>MUC2</i>) are associated with disruptions to the gut barrier in alcoholic liver disease (ALD). Interest in drugs that can target gut mucins in ALD has grown; however to date, no studies have examined the properties of drugs on expression of gut mucins in models of ALD. We previously demonstrated that at 10 mg/kg/day, the drug fenretinide (N-[4-hydroxyphenyl] retinamide [Fen]), a synthetic retinoid, mitigates alcohol-associated damage to the gut barrier and liver injury in a murine model of ALD. <b><i>Methods:</i></b> In this study, we specifically sought to examine the effects of Fen on gut goblet cells, and expression of mucins, including <i>MUC2</i> using a 25-day Lieber-DeCarli model of chronic alcohol intake. <b><i>Results:</i></b> Our results show that chronic alcohol intake increased gut-mucosal thickening, goblet cell numbers, and mRNA and protein expression of <i>MUC2</i> in both the ileum and colon. Alcohol intake was associated with marked decreases in ileal and colonic Notch signaling, levels of Notch ligands <i>Dll1</i> and <i>Dll4</i>, and increases in the expression of Notch-associated genes indispensable for goblet cell specification, including Math1 and Spdef. Interestingly, ileal and colonic expression of <i>KLF4</i>, which is involved in terminal differentiation of goblet cells, was reduced in mice chronically fed alcohol. Coadministration of alcohol with Fen at 10 mg/kg/day significantly reduced alcohol-associated increases in ileal and colonic mucosal thickening, ileal <i>Muc2</i>, colonic <i>Muc2</i>, <i>Muc5ac</i> and <i>Muc6</i> mRNAs, and goblet cell numbers. We also found that Fen strongly prevented alcohol-mediated suppression of the Notch ligand <i>Dll1</i>, Notch signaling, and alcohol-induced increases in expression of Notch-associated goblet cell specification genes in both the ileum and colon. In the absence of alcohol, Fen treatments alone at 10 mg/kg/day had no effects on any of the goblet cell-related endpoints. <b><i>Conclusion:</i></b> These data show for the first time that the drug Fen possesses mucosal layer-modulating properties in response to chronic alcohol abuse. These data warrant further preclinical examination of Fen given the need for anti-ALD drugs and emerging evidence of a role for intestinal goblet cell mucins in the progression of ALD.
DOI: 10.17632/df36ptj47p.1
title: FDI and Growth

description: The data is for the following four variables I used in my study
FDI
GDP per capita
Money supply
Trade openness
and GDP
DOI: 10.17632/t93byrznm6.1
title: Western blot of tau isoform expression

description: Western blots showing the expression of dephosphorylated tau isoforms in fetal brain, adult brain, and microRNA-mediated directly reprogrammed neurons.
DOI: 10.17632/4p68p72j9n.1
title: Диссертация Чистякова М.А.

description: Расчётные данные по диссертации.
DOI: 10.17632/6f439pp8d9.1
title: Three-Dimensional Time Reversal Microwave Imaging of Brain Stroke, Simulation files and codes

description: Simulation files and Matlab codes were created to derive the article results.
DOI: 10.17632/36dphh6pv5.1
title: data of Meihua and PetroChina

description: data of Meihua and PetroChina
DOI: 10.17632/3sycwj6gdh.1
title: Utemova_Masters

description: Данные и расчеты к магистерской диссертации "Управление рисками курпных проектов слияний и поглощений"
DOI: 10.17632/5397zxxp4m.1
title: Nominative_Topic_marker_choice

description: Experimental materials for Choice of nominative and topic markers in Korean discourse
DOI: 10.17632/x7tdk9z2dj.2
title: Supplemental data Estienne

description: Supplemental data for Estienne et al 2022 : Chronic dietary exposure to a glyphosate-based herbicide results in reversible increase early embryo mortality in chicken
DOI: 10.17632/yjk3x2p5db.1
title: Flagellate erythema associated- dermatomyositis 

description: Supplementary Table referred to "Flagellate erythema associated- dermatomyositis "
Supplementary Table 1: Baseline characteristics of 12 patients with flagellate erythema in dermatomyositis
DOI: 10.17632/2r8gpg7pxn.1
title: Semi-subterranean environment data of the Gyeongju Seokbinggo in South Korea

description: This data provides information on the semi-subterranean environment inside the Gyeongju Seokbinggo of South Korea. External environmental data includes environmental data from Gyeongju-city, Korea Meteorological Observatory.
DOI: 10.17632/zjh86mjst7.1
title: RNA-Seq

description: Raw Data of RNA-Seq
DOI: 10.17632/svwg44vv5w.2
title: MIMO Array Data- Final

description: The uploaded data of printed antenna with AMC surface for vehicular MIMO systems are deposited.
DOI: 10.17632/tfkzkv6xt8.1
title: Jingdezhen Porcelain Cluster Datasets 2008/2014

description: The Jingdezhen Porcelain Cluster Datasets were collected for the owner's master's and Ph.D. projects in 2008 and 2014. The inductive approach with classic grounded theory methodology determines it is not out of a research question, but problems and puzzles why a cultural cluster such as Jingdezhen can survive over 2200 years in history experiences disasters and wars. Prior historiography in 2007 indicates a departure of the Jingdezhen culture cluster from Porter's CAN model and cluster life cycle. Even though there were multiple cluster life cycles presented by field researchers post-Porter's, none strives like Jingdezhen - a prominent climbing curve made of many normal distribution curves. My first dataset was collected with a group of anthropologists in Jingdezhen. They showed me the art of conducting ethnography research, interviewing techniques, and the slang in porcelain production. I stayed in Jingdezhen for a month, sinking in data to explore the secrets behind its sustainability. Data collection in 2014 mixed exploration and exploitation. From the 2008 data analysis, I have arrived at some conclusions; yet to be confirmed. The 2014 data collection was quite intensive, which generated a lot of data in a shorter time frame and fewer fieldnotes. I embedded my concerns during the interviews. Jingdezhen has become my life-long "friend," which I visit every year or every two years to witness its growth, reaching out to many new fields – eco-tourism, museums, ceramic tours, and camps.
DOI: 10.17632/88xwnn92tp.1
title: Mechanized Robot

description: Mechanized Robot Detecting and Recognizing Fruit
DOI: 10.17632/9k5wxr2kmb.1
title: Implementation of a customer-centric model in an investment company

description: Расчеты, сопутствующие выпускной квалификационной работе Рожковский Арины "Внедрение клиентоцентричной модели в инвестиционной компании"
DOI: 10.17632/hdvvb37d6c.1
title:  wastewater projects 

description: This file presents the data of the suggested wastewater projects include pipes and manholes for rain and sewage networks
DOI: 10.17632/kwx3f9p9x2.1
title: Companion data and code files for Bayesian OD-estimation

description: These are the companion data and code files for:

Steffen O.P. Blume, Francesco Corman, Giovanni Sansavini, "Bayesian Origin-Destination Estimation in Networked Transit
Systems using Nodal In- and Outflow Counts", Transportation Research Part B, 2022

Please refer to the README.txt file.
DOI: 10.17632/zf8g5dn993.1
title: Supporting data for Fault-slip estimation in Nahan Salient NW Himalayas

description: The dataset consists of archived global seismicity data (from two different sources), RTK DGPS point cloud data of river terraces collected in the field, and ALOS PALSAR DEM data used for the scarp profile.
DOI: 10.5281/zenodo.6340880
title: SCoRe - Student Crowd Research. A german dataset of university students' written reflections on their participation in collaborative research-based learning focused on sustainability topics and using videos as a research tool.

description: Schriftliche Reflexionen von 57 Studierenden als Prüfungsleistung im Rahmen des forschenden Lernens mit Video zu Nachhaltigkeitsthemen. Die Reflexionen wurden durch vorgegebene Fragen angeleitet. Die hier vorliegenden Texte sind, von den Studierenden selbst niedergeschriebene, Transkripte von Sprechtexten eines Self-Video-Casts. Es handelt sich dabei um eine benotete Prüfungsleistung einer universitätsübergreifenden Wahlpflicht-Lehrveranstaltung mit 1-3 Credit-Points. A dataset containing written reflections of 57 university students from several German universities and fields of study on their participation in collaborative research-based learning focused on sustainability topics and using videos as a research tool. These reflections were guided by given questions. The texts presented here are transcripts of spoken texts of self-video-casts, written down by the students themselves. The texts were graded as part of an inter-university elective course worth 1-3 credit points.
description: Videobasiertes Lernen durch Forschung zur Nachhaltigkeit: Student Crowd Research (SCoRe) SCoRe ist ein Forschungsprojekt, das im Forschungsfeld der digitalen Hochschulbildung verortet werden kann. Mit fünf Teilprojekten arbeiteten wir gemeinsam an einer Lernumgebung für studentische Forschungsprojekte zu Nachhaltigkeitsfragen. SCoRe wurde von Oktober 2018 bis März 2022 durch das Bundesministerium für Bildung und Forschung unter dem Förderkennzeichen 16DHB2118 gefördert.
DOI: 10.5281/zenodo.6340879
title: SCoRe - Student Crowd Research. A german dataset of university students' written reflections on their participation in collaborative research-based learning focused on sustainability topics and using videos as a research tool.

description: Schriftliche Reflexionen von 57 Studierenden als Prüfungsleistung im Rahmen des forschenden Lernens mit Video zu Nachhaltigkeitsthemen. Die Reflexionen wurden durch vorgegebene Fragen angeleitet. Die hier vorliegenden Texte sind, von den Studierenden selbst niedergeschriebene, Transkripte von Sprechtexten eines Self-Video-Casts. Es handelt sich dabei um eine benotete Prüfungsleistung einer universitätsübergreifenden Wahlpflicht-Lehrveranstaltung mit 1-3 Credit-Points. A dataset containing written reflections of 57 university students from several German universities and fields of study on their participation in collaborative research-based learning focused on sustainability topics and using videos as a research tool. These reflections were guided by given questions. The texts presented here are transcripts of spoken texts of self-video-casts, written down by the students themselves. The texts were graded as part of an inter-university elective course worth 1-3 credit points.
description: Videobasiertes Lernen durch Forschung zur Nachhaltigkeit: Student Crowd Research (SCoRe) SCoRe ist ein Forschungsprojekt, das im Forschungsfeld der digitalen Hochschulbildung verortet werden kann. Mit fünf Teilprojekten arbeiteten wir gemeinsam an einer Lernumgebung für studentische Forschungsprojekte zu Nachhaltigkeitsfragen. SCoRe wurde von Oktober 2018 bis März 2022 durch das Bundesministerium für Bildung und Forschung unter dem Förderkennzeichen 16DHB2118 gefördert.
DOI: 10.5281/zenodo.6541983
title: Molecular Dynamics simulations of shear droplets

description: This dataset contains the results of non-equilibrium Molecular Dynamic simulations of 2-dimensional SPC/E water nanodroplets confined between silica-like walls and under shear flow conditions, performed using Gromacs. The main purposes of these simulations are: a) to study the motion of three-phases contact lines over high-friction surfaces, b) to study the critical transition leading to droplet breakage and c) to test the modelling and prediction capabilities of continuous fluid dynamics simulation methods. The investigation of the points above is illustrated in an article, which has been digitally published on the Journal of Fluid Mechanics (doi:10.1017/jfm.2022.219, see references); please refer to the paper for a detailed description of the molecular simulations and of the tested CFD methods. The publication of this dataset not only grants the reproducibility of the results discussed in the article, but also serves as collection of benchmarks for the fellow researchers willing to test improved and/or alternative models to describe the motion of contact lines.
description: {"references": ["L\u0101cis, U., Pellegrino, M., Sundin, J., Amberg, G., Zaleski, S., Hess, B., & Bagheri, S. (2022). Nanoscale sheared droplet: Volume-of-fluid, phase-field and no-slip molecular dynamics. Journal of Fluid Mechanics, 940, A10. doi:10.1017/jfm.2022.219"]}
DOI: 10.5281/zenodo.5997091
title: Molecular Dynamics simulations of shear droplets

description: This dataset contains the results of non-equilibrium Molecular Dynamic simulations of 2-dimensional SPC/E water nanodroplets confined between silica-like walls and under shear flow conditions, performed using Gromacs. The main purposes of these simulations are: a) to study the motion of three-phases contact lines over high-friction surfaces, b) to study the critical transition leading to droplet breakage and c) to test the modelling and prediction capabilities of continuous fluid dynamics simulation methods. The investigation of the points above is illustrated in an article, which has been digitally published on the Journal of Fluid Mechanics (doi:10.1017/jfm.2022.219, see references); please refer to the paper for a detailed description of the molecular simulations and of the tested CFD methods. The publication of this dataset not only grants the reproducibility of the results discussed in the article, but also serves as collection of benchmarks for the fellow researchers willing to test improved and/or alternative models to describe the motion of contact lines.
description: {"references": ["L\u0101cis, U., Pellegrino, M., Sundin, J., Amberg, G., Zaleski, S., Hess, B., & Bagheri, S. (2022). Nanoscale sheared droplet: Volume-of-fluid, phase-field and no-slip molecular dynamics. Journal of Fluid Mechanics, 940, A10. doi:10.1017/jfm.2022.219"]}
DOI: 10.6084/m9.figshare.19753480
title: AETKF data for the real-scale scenario.zip

description: AETKK data for the real-scale scenario
DOI: 10.6084/m9.figshare.19753480.v1
title: AETKF data for the real-scale scenario.zip

description: AETKK data for the real-scale scenario
DOI: 10.5281/zenodo.6542003
title: Supplementary Materials

description: Appendix A: The selected radiomics features from the 13 methods and the features in three classification situations.
DOI: 10.5281/zenodo.6542002
title: Supplementary Materials

description: Appendix A: The selected radiomics features from the 13 methods and the features in three classification situations.
DOI: 10.6084/m9.figshare.19753510
title: Supplementary Material for: A Sensitivity Meta-Analysis of Disease-Specific Death in Localized Cutaneous Squamous Cell Carcinoma

description: <b><i>Background:</i></b> Patients with localized cutaneous squamous cell carcinoma (cSCC) have different risk for disease-specific death (DSD) from patients with metastatic cSCC. <b><i>Patients and Methods:</i></b> We conducted a sensitivity meta-analysis to identify the risk factors associated with DSD, in patients with localized cSCC at initial diagnosis (without locoregional or distant metastasis). <b><i>Results:</i></b> Nine studies, with 5,205 patients, were included. Median follow-up ranged from 18 to 81 months. The number of deaths due to cSCC ranged from 3 to 40. Patients with immunosuppression were almost 2 times more likely to die from cSCC compared to immunocompetent patients (risk ratio: 1.85, 95% CI: 1.32–2.61). There was a positive but nonsignificant overall association with DSD for depth beyond fat, tumor diameter, presence of perineural invasion, location, and thickness. These results should be interpreted with caution, as there was limited evidence-based data on DSD in localized cSCC, due to the small number of studies reporting DSD, the absence of reporting the margin status, the variability of selected risk factors across studies, and the variability of definition of risk factors. <b><i>Conclusions:</i></b> In our meta-analysis, in localized cSCC at initial diagnosis, patients with immunosuppression were at significantly higher risk to die from cSCC. Our findings further highlight the need for a standardized set of risk factors to be included in studies on prognosis of cSCC and for including margin status and DSD among the studied outcomes.
DOI: 10.6084/m9.figshare.19753510.v1
title: Supplementary Material for: A Sensitivity Meta-Analysis of Disease-Specific Death in Localized Cutaneous Squamous Cell Carcinoma

description: <b><i>Background:</i></b> Patients with localized cutaneous squamous cell carcinoma (cSCC) have different risk for disease-specific death (DSD) from patients with metastatic cSCC. <b><i>Patients and Methods:</i></b> We conducted a sensitivity meta-analysis to identify the risk factors associated with DSD, in patients with localized cSCC at initial diagnosis (without locoregional or distant metastasis). <b><i>Results:</i></b> Nine studies, with 5,205 patients, were included. Median follow-up ranged from 18 to 81 months. The number of deaths due to cSCC ranged from 3 to 40. Patients with immunosuppression were almost 2 times more likely to die from cSCC compared to immunocompetent patients (risk ratio: 1.85, 95% CI: 1.32–2.61). There was a positive but nonsignificant overall association with DSD for depth beyond fat, tumor diameter, presence of perineural invasion, location, and thickness. These results should be interpreted with caution, as there was limited evidence-based data on DSD in localized cSCC, due to the small number of studies reporting DSD, the absence of reporting the margin status, the variability of selected risk factors across studies, and the variability of definition of risk factors. <b><i>Conclusions:</i></b> In our meta-analysis, in localized cSCC at initial diagnosis, patients with immunosuppression were at significantly higher risk to die from cSCC. Our findings further highlight the need for a standardized set of risk factors to be included in studies on prognosis of cSCC and for including margin status and DSD among the studied outcomes.
DOI: 10.6084/m9.figshare.19753501
title: Supplementary Material for: Low-Dose MST-16/VP-16 Combination Chemotherapy in 9 Patients with Tumor Stage Mycosis Fungoides

description: <b><i>Background/Aim:</i></b> MST-16 and VP-16, both of which are topoisomerase II inhibitors, are antitumor agents regularly used to treat malignant lymphoma and small cell lung carcinoma. New therapeutic agents for tumor stage mycosis fungoides (MF) have recently been developed, but their efficacy is limited. We herein retrospectively reported the use of MST-16/VP-16 combination therapy for tumor stage MF at multiple treatment centers and examined their antitumor effect. <b><i>Methods:</i></b> Five male and four female patients with tumor stage MF were enrolled. Age at the start of therapy ranged from 33 to 80 years (average: 54.5 years), and the previous treatment consisted of R-CHOP, CAVOP-IFN, etc. The protocol for low-dose MST-16/VP-16 combination chemotherapy consisted of 800 mg MST-16 and 25 mg VP-16 administered 5 days per month. <b><i>Results:</i></b> Three of the 9 patients died, but two of the three fatalities were unrelated to MF. A treatment effect was seen in three and 6 patients who showed a complete response and a partial response, respectively. The 5-year and 10-year overall survival rate was 85.7% and 57.1%, respectively. Adverse reactions consisted of 4 cases of nausea and 1 case of leukopenia. <b><i>Conclusion:</i></b> The present study demonstrated that the response rate to MST-16/VP-16 combination therapy was 100% and that the treatment effect was relatively long, suggesting that this therapy may be a viable option for treating tumor stage MF.
DOI: 10.6084/m9.figshare.19753501.v1
title: Supplementary Material for: Low-Dose MST-16/VP-16 Combination Chemotherapy in 9 Patients with Tumor Stage Mycosis Fungoides

description: <b><i>Background/Aim:</i></b> MST-16 and VP-16, both of which are topoisomerase II inhibitors, are antitumor agents regularly used to treat malignant lymphoma and small cell lung carcinoma. New therapeutic agents for tumor stage mycosis fungoides (MF) have recently been developed, but their efficacy is limited. We herein retrospectively reported the use of MST-16/VP-16 combination therapy for tumor stage MF at multiple treatment centers and examined their antitumor effect. <b><i>Methods:</i></b> Five male and four female patients with tumor stage MF were enrolled. Age at the start of therapy ranged from 33 to 80 years (average: 54.5 years), and the previous treatment consisted of R-CHOP, CAVOP-IFN, etc. The protocol for low-dose MST-16/VP-16 combination chemotherapy consisted of 800 mg MST-16 and 25 mg VP-16 administered 5 days per month. <b><i>Results:</i></b> Three of the 9 patients died, but two of the three fatalities were unrelated to MF. A treatment effect was seen in three and 6 patients who showed a complete response and a partial response, respectively. The 5-year and 10-year overall survival rate was 85.7% and 57.1%, respectively. Adverse reactions consisted of 4 cases of nausea and 1 case of leukopenia. <b><i>Conclusion:</i></b> The present study demonstrated that the response rate to MST-16/VP-16 combination therapy was 100% and that the treatment effect was relatively long, suggesting that this therapy may be a viable option for treating tumor stage MF.
DOI: 10.5281/zenodo.6539705
title: Base de datos estudio hábitos de lectura y educación durante el COVID-19

description: Conjunto de datos del artículo: Análisis de los desafíos dentro del contexto de la educación y la lectura durante la pandemia, en la prensa internacional de ámbito hispánico. Revista Teknokultura Año de publicación: 2022 http://dx.doi.org/10.5209/TEKN.77819
DOI: 10.5281/zenodo.5979563
title: Base de datos estudio hábitos de lectura y educación durante el COVID-19

description: Conjunto de datos del artículo: Análisis de los desafíos dentro del contexto de la educación y la lectura durante la pandemia, en la prensa internacional de ámbito hispánico. Revista Teknokultura Año de publicación: 2022 http://dx.doi.org/10.5209/TEKN.77819
DOI: 10.5281/zenodo.6536287
title: Binding networks identify targetable protein pockets for mechanism-based drug design

description: This repository contains supporting files for the manuscript entitled: Binding networks identify targetable protein pockets for mechanism-based drug design.
DOI: 10.5281/zenodo.6536286
title: Binding networks identify targetable protein pockets for mechanism-based drug design

description: This repository contains supporting files for the manuscript entitled: Binding networks identify targetable protein pockets for mechanism-based drug design.
DOI: 10.48596/pgn.rsus1p1-8.boulderco-ncar.p204s1
title: Pandora 204s1 direct sun SO2 total vertical column amount at BoulderCO-NCAR; Processing Code: sus1; Processor Version: 1-8
DOI: 10.5281/zenodo.6393844
title: Paleozoic ocean plate stratigraphy unraveled by calcite U-Pb dating of basalt and biostratigraphy

description: New calcite U-Pb geochronologic, biostratigraphic, and geochemical data from rocks sampled in the Texas Beds, New England Orogen (Eastern Australia). Paper published in Communications Earth & Environment: https://doi.org/10.1038/s43247-022-00446-1.
DOI: 10.5281/zenodo.6393843
title: Paleozoic ocean plate stratigraphy unraveled by calcite U-Pb dating of basalt and biostratigraphy

description: New calcite U-Pb geochronologic, biostratigraphic, and geochemical data from rocks sampled in the Texas Beds, New England Orogen (Eastern Australia). Paper published in Communications Earth & Environment: https://doi.org/10.1038/s43247-022-00446-1.
DOI: 10.5517/ccdc.csd.cc29xr44
title: CCDC 2142786: Experimental Crystal Structure Determination

description: Related Article: Qiwen Wang, Jikai Liu, Qunfei Zhao, Qingli He|2022|Fungal Genet. Biol.|161|102700|doi:10.1016/j.fgb.2022.103700