cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11853477.v1
title: Elevated CEA and CA19-9 serum levels independently predict advanced pancreatic cancer at diagnosis

description: <b>Purpose:</b> It is suggested that tumour markers carcinoembryonic antigen (CEA) and carbohydrate antigen 19-9 (CA19-9) could be used to predict the stage of pancreatic cancer. However, optimal cut-off values for CEA and CA19-9 are disputable. This study aimed to assess the value of CEA and CA19-9 serum levels at diagnosis of pancreatic ductal adenocarcinoma (PDAC) as predictors for the advanced stage of PDAC in patients discussed at pancreatic multidisciplinary team (MDT) meetings. <b>Methods:</b> Patients with suspected PDAC discussed at MDT meetings from 2013 to 2017 were reviewed, in order to determine optimal cut-off values of both CEA and CA19-9. <b>Results:</b> In total, 375 patients were included. Optimal cut-off values for predicting advanced PDAC were 7.0 ng/ml for CEA and 305.0 U/ml for CA19-9, resulting in positive predictive values of 83.3%, 73.6%, and 91.4% for CEA, CA19-9 and combined, respectively. Both tumour markers were independent predictors of advanced PDAC, demonstrated by an odds ratio of 4.21 (95% CI:1.85–9.56; <i>p</i> = 0.001) for CEA and 2.58 for CA19-9 (95% CI:1.30–5.14; <i>p</i> = 0.007). <b>Conclusions:</b> CEA appears to be a more robust predictor of advanced PDAC than CA19-9. Implementing CEA and CA19-9 serum levels during MDT meetings as an additional tool for establishing tumour resectability is worthwhile for tailored diagnostics.
DOI: 10.6084/m9.figshare.11853390
title: Data set for Log jam formation at bridges and the effect on floodplain flow: A flume experiment

description: Data set for Log jam formation at bridges and the effect on floodplain flow: A flume experiment <br>Takaaki Okamoto | Hiroshi Takebayashi | Michio Sanjou | Ryuta Suzuki | Keiichi Toda<br>J Flood Risk Management. 2020;13 (Suppl. 1):e12562.<br><br>https://onlinelibrary.wiley.com/doi/epdf/10.1111/jfr3.12562<br>
DOI: 10.6084/m9.figshare.11853387
title: Australian Aerial Waterbird Survey Database

description: The Australian Aerial Waterbird Surveys (AWS) database stores temporal and spatial waterbird data on individual species, their breeding status and estimates of wetland area, collected during annual aerial surveys, extending back to 1983. The core methodology for these surveys has remained the same. The database includes three principal survey programs: The Eastern Australian Waterbird Survey, the National Waterbird Survey and surveys of the major wetland sites in the Murray-Darling Basin. Since 1983, the Eastern Australian Waterbird Survey has covered about a third of the continent each October, representing one of the larger and longer running biodiversity surveys in Australia, sampling wetland and waterbird communities across 2.7 million km2 of eastern Australia. In 2008, we did aerial surveys over most large wetlands across Australia during a period of two months. Since 2010, we have comprehensively surveyed all the major wetlands in the Murray-Darling Basin.<br>Waterbirds (including nests and broods) were counted from high-winged aircraft (e.g. Cessna 206) at 167–204 km hr-1 and a height of 30–46 m, within 150 m of the wetland‘s shoreline where waterbirds concentrated. A front-right observer (navigator) and a back-left observer independently record counts on audio recorders, with their combined counts making up a completed count. Counts are attributed on the recorder to a unique number for each wetland, and a geolocation, as well as the time of day the survey commenced. Also, the percent fullness (inundated area) of each wetland is estimated, relative to the mapped high water mark. All waterbirds are identified to species except those that cannot be consistently identified to species’ level from the air and were grouped: small grebes, small egrets, terns and small and large migratory wading birds (Charadriformes).<br>
DOI: 10.6084/m9.figshare.11853387.v1
title: UNSW Aerial Survey Waterbirds 1983-2019 1a.csv

description: The Australian Aerial Waterbird Surveys (AWS) database stores temporal and spatial waterbird data on individual species, their breeding status and estimates of wetland area, collected during annual aerial surveys, extending back to 1983. The core methodology for these surveys has remained the same. The database includes three principal survey programs: The Eastern Australian Waterbird Survey, the National Waterbird Survey and surveys of the major wetland sites in the Murray-Darling Basin. Since 1983, the Eastern Australian Waterbird Survey has covered about a third of the continent each October, representing one of the larger and longer running biodiversity surveys in Australia, sampling wetland and waterbird communities across 2.7 million km2 of eastern Australia. In 2008, we did aerial surveys over most large wetlands across Australia during a period of two months. Since 2010, we have comprehensively surveyed all the major wetlands in the Murray-Darling Basin.<br>Waterbirds (including nests and broods) were counted from high-winged aircraft (e.g. Cessna 206) at 167–204 km hr-1 and a height of 30–46 m, within 150 m of the wetland‘s shoreline where waterbirds concentrated. A front-right observer (navigator) and a back-left observer independently record counts on audio recorders, with their combined counts making up a completed count. Counts are attributed on the recorder to a unique number for each wetland, and a geolocation, as well as the time of day the survey commenced. Also, the percent fullness (inundated area) of each wetland is estimated, relative to the mapped high water mark. All waterbirds are identified to species except those that cannot be consistently identified to species’ level from the air and were grouped: small grebes, small egrets, terns and small and large migratory wading birds (Charadriformes).<br>
DOI: 10.6084/m9.figshare.11853387.v2
title: Australian Aerial Waterbird Surveys

description: The Australian Aerial Waterbird Surveys (AWS) database stores temporal and spatial waterbird data on individual species, their breeding status and estimates of wetland area, collected during annual aerial surveys, extending back to 1983. The core methodology for these surveys has remained the same. The database includes three principal survey programs: The Eastern Australian Waterbird Survey, the National Waterbird Survey and surveys of the major wetland sites in the Murray-Darling Basin. Since 1983, the Eastern Australian Waterbird Survey has covered about a third of the continent each October, representing one of the larger and longer running biodiversity surveys in Australia, sampling wetland and waterbird communities across 2.7 million km2 of eastern Australia. In 2008, we did aerial surveys over most large wetlands across Australia during a period of two months. Since 2010, we have comprehensively surveyed all the major wetlands in the Murray-Darling Basin.<br>Waterbirds (including nests and broods) were counted from high-winged aircraft (e.g. Cessna 206) at 167–204 km hr-1 and a height of 30–46 m, within 150 m of the wetland‘s shoreline where waterbirds concentrated. A front-right observer (navigator) and a back-left observer independently record counts on audio recorders, with their combined counts making up a completed count. Counts are attributed on the recorder to a unique number for each wetland, and a geolocation, as well as the time of day the survey commenced. Also, the percent fullness (inundated area) of each wetland is estimated, relative to the mapped high water mark. All waterbirds are identified to species except those that cannot be consistently identified to species’ level from the air and were grouped: small grebes, small egrets, terns and small and large migratory wading birds (Charadriformes).<br>
DOI: 10.6084/m9.figshare.11852736
title: Microbial biomass drives seasonal hysteresis in litter heterotrophic respiration in a warm-temperate forest

description: Data_SIR include plot, month, and SIR (mgCO2/kg/h).Data_flux include timestamp, precipitation (mm/day), air temperature (degree), litter moisture (g/g), and litter heterotrophic respiration (umolCO2/m2/s).
DOI: 10.6084/m9.figshare.11852736.v1
title: Microbial biomass drives seasonal hysteresis in litter heterotrophic respiration in a warm-temperate forest

description: Data_SIR include plot, month, and SIR (mgCO2/kg/h).Data_flux include timestamp, precipitation (mm/day), air temperature (degree), litter moisture (g/g), and litter heterotrophic respiration (umolCO2/m2/s).
DOI: 10.6084/m9.figshare.11852724
title: Head/tail-break-based multiscale polyline representation

description: The codes implement four functional modules including Fourier Descriptor calculation, Head/tail breaks of Fourier Descriptor, Polyline reconstruction; Polyline shape distance computation.The experimental data are polylines of shapefile including coastlines and contours.
DOI: 10.6084/m9.figshare.11852706
title: Three-dimensional S-wave Velocity Structure of Central Japan Estimated by Surface-wave Tomography Using Ambient Noise

description: <pre><pre>You can download the 3D S-wave velocity structure model.</pre></pre><pre>The data include<br> 1 2 3 4<br> 1 Latitude Longitude depth Vs<br> 2 Latitude Longitude depth Vs<br> : : : : :<br> : : : : :<br></pre>
DOI: 10.6084/m9.figshare.11852724.v1
title: Head/tail-break-based multiscale polyline representation

description: The codes implement four functional modules including Fourier Descriptor calculation, Head/tail breaks of Fourier Descriptor, Polyline reconstruction; Polyline shape distance computation.The experimental data are polylines of shapefile including coastlines and contours.
DOI: 10.6084/m9.figshare.11852697
title: ELLIOTI_0

description: Testing .bb file
DOI: 10.6084/m9.figshare.11852700
title: trackDb.txt

description: trackDb.txt
DOI: 10.6084/m9.figshare.11852697.v1
title: ELLIOTI_0

description: Testing .bb file
DOI: 10.6084/m9.figshare.11852700.v1
title: trackDb.txt

description: trackDb.txt
DOI: 10.6084/m9.figshare.11852640
title: Smoothed Dataset

description: Smoothed dataset
DOI: 10.6084/m9.figshare.11852634
title: Comprehensive profiling of Small RNAs in human embryo-conditioned culture media by improved sequencing and quantitative PCR methods

description: Embryo implantation depends on two primary factors: the quality of the embryo and endometrial receptivity. Small RNAs have been shown to be potent epigenetic regulators influencing cell proliferation, differentiation, and communication even in the context of early embryonic development. However, previous reports are limited to miRNAs and lack sensitivity. Here, we describe a platform for non-invasive small RNA biomarker discovery and validation from embryo-conditioned culture media (ECCM). We hypothesize that small non-coding RNAs (sncRNAs) are secreted by the embryo into the ECCM and test the limit of detection for profiling sncRNA by deep sequencing and quantitative PCR. In the first set of experiments, we evaluated sequencing sensitivity by comparing sncRNA profiles from pools of 10, 5, 3, and single ECCM drops. Next, we performed a similar test for TaqMan qPCR sensitivity by measuring select sncRNAs in 5, 3 and single drop ECCM pools. Finally, we compared the expression of an sncRNA panel by qPCR in single ECCM vs no-embryo control media . We report the first comprehensive sequencing of sncRNAs in ECCM with a sequencing sensitivity of 3 single embryo drops, capturing ~150 miRNAs and an abundance of tRNA-derived small RNAs (tsRNAs). We then profiled 15 sncRNAs by qPCR and determined that the assay maintains sensitivity in single ECCM drops. Finally, we found significant differences in these sncRNA expression between control and ECCM drops. Improving embryo selection is crucial for reducing time to pregnancy. Here we describe a sensitive technique for biomarker discovery by sequencing and qPCR validation in ECCM, demonstrating that the majority of sncRNAs are embryo derived. We also report an abundance of tsRNAs which suggests these sncRNAs may have functions in endometrial-maternal communication beyond the microRNAs which have been described previously. <b>Abbreviations:</b> PGT-A: Preimplantation genetic testing for aneuploidies; ECCM: Embryo-conditioned culture media; sncRNAs: Small non-coding RNAs; miRNAs: microRNAs; EVs: Extracellular vesicles; PCA: Principal component analysis.
DOI: 10.6084/m9.figshare.11852634.v1
title: Comprehensive profiling of Small RNAs in human embryo-conditioned culture media by improved sequencing and quantitative PCR methods

description: Embryo implantation depends on two primary factors: the quality of the embryo and endometrial receptivity. Small RNAs have been shown to be potent epigenetic regulators influencing cell proliferation, differentiation, and communication even in the context of early embryonic development. However, previous reports are limited to miRNAs and lack sensitivity. Here, we describe a platform for non-invasive small RNA biomarker discovery and validation from embryo-conditioned culture media (ECCM). We hypothesize that small non-coding RNAs (sncRNAs) are secreted by the embryo into the ECCM and test the limit of detection for profiling sncRNA by deep sequencing and quantitative PCR. In the first set of experiments, we evaluated sequencing sensitivity by comparing sncRNA profiles from pools of 10, 5, 3, and single ECCM drops. Next, we performed a similar test for TaqMan qPCR sensitivity by measuring select sncRNAs in 5, 3 and single drop ECCM pools. Finally, we compared the expression of an sncRNA panel by qPCR in single ECCM vs no-embryo control media . We report the first comprehensive sequencing of sncRNAs in ECCM with a sequencing sensitivity of 3 single embryo drops, capturing ~150 miRNAs and an abundance of tRNA-derived small RNAs (tsRNAs). We then profiled 15 sncRNAs by qPCR and determined that the assay maintains sensitivity in single ECCM drops. Finally, we found significant differences in these sncRNA expression between control and ECCM drops. Improving embryo selection is crucial for reducing time to pregnancy. Here we describe a sensitive technique for biomarker discovery by sequencing and qPCR validation in ECCM, demonstrating that the majority of sncRNAs are embryo derived. We also report an abundance of tsRNAs which suggests these sncRNAs may have functions in endometrial-maternal communication beyond the microRNAs which have been described previously. <b>Abbreviations:</b> PGT-A: Preimplantation genetic testing for aneuploidies; ECCM: Embryo-conditioned culture media; sncRNAs: Small non-coding RNAs; miRNAs: microRNAs; EVs: Extracellular vesicles; PCA: Principal component analysis.
DOI: 10.6084/m9.figshare.11852640.v1
title: Smoothed Dataset

description: Smoothed dataset
DOI: 10.6084/m9.figshare.11852640.v3
title: Smoothed Dataset

description: Smoothed dataset
DOI: 10.6084/m9.figshare.11852640.v2
title: Smoothed Dataset

description: Smoothed dataset
DOI: 10.6084/m9.figshare.11852499
title: Peumo Water chemistry and isotopes data

description: Data set of project RLA/7/021 ARCAL CXLIX
DOI: 10.6084/m9.figshare.11852499.v1
title: Peumo Water chemistry and isotopes data

description: Data set of project RLA/7/021 ARCAL CXLIX
DOI: 10.6084/m9.figshare.11852229
title: Data repository of paper "Glutamateric contribution to probabilistic reasoning and jumping-to-conclusions in schizophrenia"

description: Data repository of paper "Glutamateric contribution to probabilistic reasoning and jumping-to-conclusions in schizophrenia" available upon request
DOI: 10.6084/m9.figshare.11852157
title: bigBed Great Ape Smoothed Files

description: Smoothed with a Gaussian filter of sigma = 4, downsampled by 5
DOI: 10.6084/m9.figshare.11852073
title: ALL DATA.xlsx

description: Data showing:<br>Sheet 1 - All arthropods collected in the piles of organic compost produced at Waste Treatment and Final Disposal Department of Belo Horizonte. <br>Sheet 2- Temperatures measured inside each pile of organic compost.
DOI: 10.6084/m9.figshare.11852151
title: Dataset.xlsx

description: This file contains the dataset related to the article titled "A parametric-based algorithm for peak load reduction in multiple load scenarios"
DOI: 10.6084/m9.figshare.11852157.v2
title: bigBed Great Ape Smoothed Files

description: Smoothed with a Gaussian filter of sigma = 4, downsampled by 5
DOI: 10.6084/m9.figshare.11852151.v1
title: Dataset.xlsx

description: This file contains the dataset related to the article titled "A parametric-based algorithm for peak load reduction in multiple load scenarios"
DOI: 10.6084/m9.figshare.11852157.v1
title: bigBed Great Ape Smoothed Files

description: Smoothed with a Gaussian filter of sigma = 4, downsampled by 5
DOI: 10.6084/m9.figshare.11852073.v1
title: ALL DATA.xlsx

description: Data showing:<br>Sheet 1 - All arthropods collected in the piles of organic compost produced at Waste Treatment and Final Disposal Department of Belo Horizonte. <br>Sheet 2- Temperatures measured inside each pile of organic compost.
DOI: 10.6084/m9.figshare.11850447
title: Laterality in the anticipation of haptic features: the case of weight and softnessAnticipating haptic features: right is not left regarding force modulation
DOI: 10.6084/m9.figshare.11850447.v1
title: Anticipating haptic features: right is not left regarding force modulation

description: The following data are linked to the paper "Anticipating haptic features: right is not left regarding force modulation" (2020).You will find maximal, overall and mean force, response times, and response duration for left and right hand in each experimental condition (in experiment 1: H=heavy objects, L=light objects; in experiment 2: H=hard objects, S=soft objects, N=neutral objects).Details can be find in the paper.<br>
DOI: 10.6084/m9.figshare.11849019
title: Combined use of tranexamic acid and rivaroxaban in posterior lumbar interbody fusion safely reduces blood loss and transfusion rates without increasing the risk of thrombosis-A Prospective, Stratified, Randomized, Controlled Trial

description: This prospective, stratified, randomized, single-blind, placebo-controlled multicentre study investigated the safety and effectiveness of reducing blood loss and preventing venous thromboembolism (VTE) during posterior lumbar interbody fusion (PLIF) in patients with stenosis or spondylolisthesis using the combination of tranexamic acid (TXA) and rivaroxaban.
DOI: 10.6084/m9.figshare.11849019.v1
title: Combined use of tranexamic acid and rivaroxaban in posterior lumbar interbody fusion safely reduces blood loss and transfusion rates without increasing the risk of thrombosis-A Prospective, Stratified, Randomized, Controlled Trial

description: This prospective, stratified, randomized, single-blind, placebo-controlled multicentre study investigated the safety and effectiveness of reducing blood loss and preventing venous thromboembolism (VTE) during posterior lumbar interbody fusion (PLIF) in patients with stenosis or spondylolisthesis using the combination of tranexamic acid (TXA) and rivaroxaban.
DOI: 10.6084/m9.figshare.11848965
title: Raw NanoSIMS data for symbiont enrichment from heterotrophy from Intracellular competition for nitrogen controls dinoflagellate population density in corals

description: The density of dinoflagellate microalgae in the tissue of symbiotic corals is an important determinant for health and productivity of the coral animal. Yet, the specific mechanism for their regulation and the consequence for coral nutrition are insufficiently understood due to past methodological limitations to resolve the fine-scale metabolic consequences of fluctuating densities. Here, we characterized the physiological and nutritional consequences of symbiont density variations on the colony and tissue level in <i>Stylophora pistillata</i> from the Red Sea. Alterations in symbiont photophysiology maintained coral productivity and host nutrition across a broad range of symbiont densities. However, we demonstrate that density-dependent nutrient competition between individual symbiont cells, manifested as reduced nitrogen assimilation and cell biomass, likely creates the negative feedback mechanism for symbiont population growth that ultimately defines the steady-state density. Despite fundamental changes in symbiont nitrogen assimilation, we found no density-related metabolic optimum beyond which host nutrient assimilation or tissue biomass declined, indicating that host nutrient demand is sufficiently met across the typically observed range of symbiont densities under ambient conditions.
DOI: 10.6084/m9.figshare.11848962
title: Data supporting my manuscript 1 from Diversity of arthropods on <i>Acacia mangium</i> (Fabaceae) and production of this plant with dehydrated sewage sludge in degraded area

description: Sewage sludge is an organic matter-rich material with abundant fractions of nitrogen and other macro and micronutrients, essential for plant growth and development such as <i>Acacia mangium</i> Willd. (Fabales: Fabaceae) used in recovering actions of degraded areas. The objective of this study was to evaluate over 24 months the abundance and diversity of chewing and pollinator insects and arthropod predators on <i>A. mangium</i> plants and the mass production and soil coverage by this plant, fertilized with dehydrated sewage sludge, in a degraded area. The experimental design was in randomized blocks with two treatments (with and without dehydrated sewage sludge) and 24 replications. The number of leaves per branch and branches per plant, defoliation percentage by chewing insects, soil cover and abundance of chewing and pollinator insects and arthropod predators were higher on <i>A. mangium</i> plants fertilized with dehydrated sewage sludge. <i>Nasutitermes</i> sp. (Blattodea: Termitidae) and <i>Trigona spinipes</i> F. (Hymenoptera: Apidae) were the most observed insects on trunks and leaves, respectively, of <i>A. mangium</i> plants fertilized with dehydrated sewage sludge. The <i>A. mangium</i> fertilization increases the populations of different insect and spider groups on this plant.
DOI: 10.6084/m9.figshare.11849157.v1
title: River and Infrastructure Connectivity Network (RICON)

description: River and Infrastructure Connectivity Network (RICON) – shows the dependency between streamgages and reservoirs as a concise edge list for the Colorado River Basin (CRB). The RICON dataset provides (1) a complete list of edges for the unidirectional network connecting streamgages, reservoirs and NHDPlusflowline features for CRB and (2) attributes of all nodes (reservoirs and streamgages) including their geospatial locations, unique identifiers, immediate upstream and downstream nodes, etc. The RICON data archive available at figshare contains the dataset tables in comma-separated values (CSV) format. Input files are 'sites_df.csv', 'nid_df.csv' and 'NHD_data.RData'. Output file is 'Edge_List.csv' <br>