cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e110030v3
title: Longitudinal Study of the Second Generation in Spain (ILSEG), Wave 2

description: Combined Longitudinal Study of the Second Generation in Spain data set, Waves 1 and 2. This is the publicly available version of the ILSEG data (ILSEG is the Spanish acronym for Investigación Longitudinal de la Segunda Generación, Longitudinal Study of the Second Generation). Questions address the situations and plans for the future of young Spaniards who are children of immigrants to Spain, who were living in Madrid and Barcelona and attending secondary school in 2007-2008 and the 2011-2012 follow up). <br><br> The longitudinal study of the second Generation (ILSEG in its Spanish initials) represents the first attempt to conduct a large-scale study of the adaptation of children of immigrants to Spanish society over time. To that end, a large and statistically representative sample of children born to foreign parents in Spain or those brought at an early age to the country was identified and interviewed in metropolitan Madrid and Barcelona for wave 1. In total, almost 7,000 children of immigrants attending basic secondary school in close to 200 educational centers in both cities took part in the study. Because of sample attrition, wave 2 introduced a replacement sample. Additionally, a native born sample of children of Spaniards was also included to enable comparisons between native and immigrant-origin populations of the same age cohort.<br><br>Topics include basic demographics, national origins, Spanish language acquisition, foreign language knowledge and retention, parents' education and employment, respondents' education and aspirations, religion, household arrangements, life experiences, and attitudes about Spanish society. <br> Demographic variables include age, sex, birth country, language proficiency (Spanish and Catalan), language spoken in the home, number of siblings, mother's and father's birth country, religion, national identity, parent's sex, parent's marital status, parent's birth year, and the year the parent arrived in Spain.<br><br>
description: None. Data are self-weighted. Probability sampling was carried out on schools in Madrid and Barcelona and all students meeting study criteria in each selected school was interviewed.<br>
description: Response Rates: Wave 2 had a response rate of approximately 55% of Wave 1.<br>
description: face-to-face interview~~mail questionnaire~~on-site questionnaire~~telephone interview~~web-based survey~~
description: Children of immigrants and immigrant children in Madrid and Barcelona in Wave 1. Sub-sample of parental records appended to Wave 1 respondents. Wave 2 includes additional replacement sub-sample and native offspring of Spaniards sub-sample.<br>
description: Probability sampling was carried out on schools in Madrid and Barcelona and all students meeting study criteria in each selected school was interviewed.<br>
DOI: 10.5061/dryad.23h4r85/10
title: Dryad Item 10.5061/DRYAD.23H4R85/10

description: (:tba)
DOI: 10.5061/dryad.23h4r85/11
title: Dryad Item 10.5061/DRYAD.23H4R85/11

description: (:tba)
DOI: 10.5061/dryad.23h4r85/12
title: Dryad Item 10.5061/DRYAD.23H4R85/12

description: (:tba)
DOI: 10.5061/dryad.23h4r85/3
title: Dryad Item 10.5061/DRYAD.23H4R85/3

description: (:tba)
DOI: 10.5061/dryad.23h4r85/4
title: Dryad Item 10.5061/DRYAD.23H4R85/4

description: (:tba)
DOI: 10.5061/dryad.23h4r85/5
title: Dryad Item 10.5061/DRYAD.23H4R85/5

description: (:tba)
DOI: 10.5061/dryad.23h4r85/6
title: Dryad Item 10.5061/DRYAD.23H4R85/6

description: (:tba)
DOI: 10.5061/dryad.23h4r85/9
title: Dryad Item 10.5061/DRYAD.23H4R85/9

description: (:tba)
DOI: 10.5061/dryad.23h4r85/13
title: Dryad Item 10.5061/DRYAD.23H4R85/13

description: (:tba)
DOI: 10.5281/zenodo.3360433
title: BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

description: Background<br> Time consuming computational assembly and quantification of gene expression and splicing analysis from RNA-seq data vary considerably. Recent fast non-alignment tools such as Kallisto and Salmon overcome these problems, but these tools require a high quality, comprehensive reference transcripts dataset (RTD), which are rarely available in plants. Results<br> A high-quality, non-redundant barley gene RTD and database (Barley Reference Transcripts – BaRTv1.0) has been generated. BaRTv1.0, was constructed from a range of tissues, cultivars and abiotic treatments and transcripts assembled and aligned to the barley cv. Morex reference genome (Mascher et al., 2017). Full-length cDNAs from the barley variety Haruna nijo (Matsumoto et al., 2011) determined transcript coverage, and high-resolution RT-PCR validated alternatively spliced (AS) transcripts of 86 genes in five different organs and tissue. These methods were used as benchmarks to select an optimal barley RTD. BaRTv1.0-Quantification of Alternatively Spliced Isoforms (QUASI) was also made to overcome inaccurate quantification due to variation in 5’ and 3’ UTR ends of transcripts. BaRTv1.0-QUASI was used for accurate transcript quantification of RNA-seq data of five barley organs/tissues. This analysis identified 20,972 significant differentially expressed genes, 2,791 differentially alternatively spliced genes and 2,768 transcripts with differential transcript usage. Conclusion<br> A high confidence barley reference transcript dataset consisting of 60,444 genes with 177,240 transcripts has been generated. Compared to current barley transcripts, BaRTv1.0 transcripts are generally longer, have less fragmentation and improved gene models that are well supported by splice junction reads. Precise transcript quantification using BaRTv1.0 allows routine analysis of gene expression and AS.
description: The zip file contains two pairs of FASTA + GFF files -- one for the padded and one for the unpadded version of the RTD. For details on padding please refer to the preprint publication at https://www.biorxiv.org/content/10.1101/638106v3. The FASTA files contain the transcript sequences. The GFF files contain exon coordinates of the transcripts on the 2017 Morex barley reference sequence (https://www.nature.com/articles/nature22043).
description: {"references": ["Rapazote-Flores, P., et al. (2019). \"BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq.\" bioRxiv: 638106. https://www.biorxiv.org/content/10.1101/638106v3"]}
DOI: 10.5281/zenodo.3360434
title: BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

description: Background<br> Time consuming computational assembly and quantification of gene expression and splicing analysis from RNA-seq data vary considerably. Recent fast non-alignment tools such as Kallisto and Salmon overcome these problems, but these tools require a high quality, comprehensive reference transcripts dataset (RTD), which are rarely available in plants. Results<br> A high-quality, non-redundant barley gene RTD and database (Barley Reference Transcripts – BaRTv1.0) has been generated. BaRTv1.0, was constructed from a range of tissues, cultivars and abiotic treatments and transcripts assembled and aligned to the barley cv. Morex reference genome (Mascher et al., 2017). Full-length cDNAs from the barley variety Haruna nijo (Matsumoto et al., 2011) determined transcript coverage, and high-resolution RT-PCR validated alternatively spliced (AS) transcripts of 86 genes in five different organs and tissue. These methods were used as benchmarks to select an optimal barley RTD. BaRTv1.0-Quantification of Alternatively Spliced Isoforms (QUASI) was also made to overcome inaccurate quantification due to variation in 5’ and 3’ UTR ends of transcripts. BaRTv1.0-QUASI was used for accurate transcript quantification of RNA-seq data of five barley organs/tissues. This analysis identified 20,972 significant differentially expressed genes, 2,791 differentially alternatively spliced genes and 2,768 transcripts with differential transcript usage. Conclusion<br> A high confidence barley reference transcript dataset consisting of 60,444 genes with 177,240 transcripts has been generated. Compared to current barley transcripts, BaRTv1.0 transcripts are generally longer, have less fragmentation and improved gene models that are well supported by splice junction reads. Precise transcript quantification using BaRTv1.0 allows routine analysis of gene expression and AS.
description: The zip file contains two pairs of FASTA + GFF files -- one for the padded and one for the unpadded version of the RTD. For details on padding please refer to the preprint publication at https://www.biorxiv.org/content/10.1101/638106v3. The FASTA files contain the transcript sequences. The GFF files contain exon coordinates of the transcripts on the 2017 Morex barley reference sequence (https://www.nature.com/articles/nature22043).
description: {"references": ["Rapazote-Flores, P., et al. (2019). \"BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq.\" bioRxiv: 638106. https://www.biorxiv.org/content/10.1101/638106v3"]}
DOI: 10.5281/zenodo.3357950
title: Identification of spatial compartments in tissue from in situ sequencing data

description: Example data [1] for testing in situ sequencing graph-based decoding pipeline and decoding results for reproducing publication analyses. Image decoding pipeline and notebooks are available at: https://github.com/wahlby-lab/graph-iss ------------ [1] Ke, Rongqin, et al. "In situ sequencing for RNA analysis in preserved tissue and cells." <em>Nature methods</em> 10.9 (2013): 857.
DOI: 10.5285/d459cadad5f342e5a673463dce2a9b4e
title: Global gas flaring activity from the ATSR (1991-2012) and SLSTR (2017-2018) sensors

description: This dataset contains Global gas flaring activity from the Along Track Scanning Radiometer (ATSR) (1991-2012) and Sea and Land Surface Temperature Radiometer (SLSTR) (2017-2018) sensors. The data records have been processed to identify persistent thermal anomalies with spectral characteristics consistent with the combustion of natural gas during industrial gas flaring activities. Two different datasets are produced globally for each sensor type, one recording the activity and the other the sampling of these assumed gas flaring sites. The activity dataset records whenever a flare is up, i.e. is actively combusting, and provides a characterisation of the flares behaviour in terms of radiant heat output (in W). The determination of radiant heat output is achieved using the single channel SWIR radiance method of Fisher and Wooster (2018), based on the MWIR radiance method used extensively in the analysis of biomass burning. The sampling dataset records whenever a flaring site is seen by the satellite (irrespective of whether it is up or not) and also provides information on typical levels of cloud cover in the vicinity of the flare. The activity dataset contains information on the point location of the flare (accurate to within approximately ±1km) in the form of a lat/lon coordinate. Also provided is an index lookup that can be used to simply aggregate the flaring activity into arc-minute bins and these are referred to as lat_arcmin and lon_arcmin in the dataset. The sampling dataset is provided at the spatial level of the arc-minute binning only, and when merged onto the activity dataset long-term assessment of a flaring site can be performed. Such estimates of flaring activity over extended time periods for a given flaring site can be made by calculating the flare up-time (times seen actively flaring over time period or the expected number of cloud free overpasses for time period) and the mean radiant heat output of the flare for the same time period. The product of time period (in seconds), the estimated flare up-time and the mean radiant heat output provides an estimate of typical flare activity.
DOI: 10.3886/e111103v2
title: A Machine Learning Approach to Improving Occupational Income Scores

description: These files are the replication files for "A Machine Learning Approach to Improving Occupational Income Scores" by Martin Saavedra and Tate Twinam.<br><br>Abstract: Historical studies of labor markets frequently lack data on individual income. The occupational income score (OCCSCORE) is often used as an alternative measure of labor market outcomes. We consider the consequences of using OCCSCORE when researchers are interested in earnings regressions. We estimate race and gender earnings gaps in modern decennial Censuses as well as the 1915 Iowa State Census. Using OCCSCORE biases results towards zero and can result in gaps of the wrong sign. We use a machine learning approach to construct a new adjusted score based on industry, occupation, and demographics. The new income score provides estimates closer to earnings regressions. Lastly, we consider the consequences for estimates of intergenerational mobility elasticities.
DOI: 10.5281/zenodo.3360897
title: Exposome Boot Camp Lab 4: MetFrag in Practice

description: This is the full set of materials used for the MetFrag in Practice Lab at the Exposome Boot Camp https://www.mailman.columbia.edu/research/precision-prevention/exposome-boot-camp-measuring-exposures-omic-scale Overview: see PDF. Examples: see word document. Additional files are required for specific examples for upload to MetFrag. Remaining information is in the word document, in hyperlinks, online at MetFrag and MassBank or in screenshots in the PDF.
DOI: 10.5281/zenodo.3360898
title: Exposome Boot Camp Lab 4: MetFrag in Practice

description: This is the full set of materials used for the MetFrag in Practice Lab at the Exposome Boot Camp https://www.mailman.columbia.edu/research/precision-prevention/exposome-boot-camp-measuring-exposures-omic-scale Overview: see PDF. Examples: see word document. Additional files are required for specific examples for upload to MetFrag. Remaining information is in the word document, in hyperlinks, online at MetFrag and MassBank or in screenshots in the PDF.
DOI: 10.5281/zenodo.3360931
title: PGxMine

description: This describes the output files for the PGxMine project. The code for this viewer is available in the PGxMine Github repo if you want to run it independently. Each file is a tab-delimited file with a header, no comments and no quoting. You likely want <strong>pgxmine_collated.tsv</strong> if you just want the list of chemical/variant assocations. If you want the supporting sentences, look at <strong>pgxmine_sentences.tsv</strong>. You can use the <em>matching_id</em> column to connect the two files. If you want to dig further and are okay with a higher false positive rate, look at <strong>pgxmine_unfiltered.tsv</strong>. <strong>pgxmine_collated.tsv:</strong> This contains the chemical/variant associations with citation counts supporting them. It contains the normalized chemical, variant and where appropriate gene names with identifiers for PharmGKB, dbSNP and Entrez. <strong>pgxmine_sentences.tsv:</strong> This contains the supporting sentences for the chemical/variant associations in the collated file. Each row is a single supporting sentence for one association. This file contains information on the source publication (e.g. journal, publication date, etc), the actual sentence and the chemical/variant association extracted. <strong>pgxmine_unfiltered.tsv:</strong> This is the combined raw output of the createKB.py script across all of PubMed, Pubmed Central Open Access and PubMed Central Author Manuscript Collection. It contains every predicted relation with a prediction score above 0.5. So this may contain many false positives. Each row contain information on the publication (e.g. journal, publication date, etc) along with the sentence and the specific chemical/variant association.
DOI: 10.5281/zenodo.632560
title: Königsfelden: Personen-Urkunden Netzwerk

description: Verknüpfung zwischen Urkunden und Personen der Stücke im Staatsarchiv Aargau zum Kloster Königsfelden, aufbereitet zur Visualisierung mit palladio: http://palladio.designhumanities.org/#/visualization Auf dem Register von Georg Boner (Staatsarchiv Aargau, Aarau) aufbauende Umsetzung der Verknüpfungen zwischen Urkunden/Dokumenten und Personen der Institution Königsfelden (Ordo Fratores Minorum, Klarissen, Hofmeisterei).
DOI: 10.21227/8yqc-1j15
title: Federated Learning: THz datasets

description: Database for FMCW THz radars (HR workspace) and sample code for federated learning
DOI: 10.21227/mwtq-av37
title: Federated Learning: THz datasets

description: Database for FMCW THz radars (HR workspace) and sample code for federated learning
DOI: 10.6073/pasta/97667061a977dd953f32d588312e1655
title: Respiration in soils collected from the REU synoptic sample grid in the Andrews Experimental Forest, 1994-1995

description: The 1993 (SP005) sampling grid was expanded to 183 sites providing a more comprehensive sampling grid. Because of potential edge effects problems, all sample locations were moved at least 20 meters from the closest road or clearing. Changes from the original location are given in entity 2. CO2 is measured over a period of 41 weeks in soils collected from all of the REU synoptic sample sites in the summer of 1994. Soils were weighted at the same time that respiration was assayed and moisture content was maintained at the same level throughout the series. The time period represented by this data is 15 September 1994 to 12 July 1995. In the initial stages, CO2 concentrations were assayed every week, after 15 weeks, the incubation period was extended to 2 weeks. After the incubation vessels were assayed, the headspace was flushed with lab air and the moisture was adjusted with sterile deionized water. Results show that there was a very high correlation between respiration rates during the 1st and 3rd weeks (r = 0.96) suggesting that the two week incubation period we us as an indicator of initial concentrations of labile carbon is valid. There was also a high correlation between rates observed within the first week and rates observed after 41 weeks (r = 0.85) suggesting that the initial rates provide a good relative guide to rates observed after 10 months. In addition, respiration rates after 41 weeks were 80% of those observed during the first week.
DOI: 10.21227/f0tr-7x49
title: Federated Learning: example dataset with THz radars (122GHz)

description: Database for FMCW THz radars (HR workspace) and sample code for federated learning
DOI: 10.5281/zenodo.3360948
title: DWD European Weather 2

description: opendata.dwd.de - OpenData by Deutscher Wetter Dienst Conditions: https://www.dwd.de/EN/service/copyright/copyright_node.html dates and times are UTC.
DOI: 10.5286/isis.e.rb1920392
title: Understanding the local structure of Li6PS5X (X = Cl, Br, I) and its impact on Li migration  a neutron PDF study

description: Cubic Argyrodites, Li6PS5X, are promising candidates for solid state electrolytes and much effort is put in understanding their structure property relation. NMR studies revealed, that within the anion sublattice, Cl- and Br- tend to be statistically distributed, while I- occupies a separate crystallographic position. It is of immediate need to understand the role of occupational defects and distortions in these materials in detail, since such structural peculiarities highly correlate with ion migration. A review of the effect of lattice distortions and ion migration barriers revealed a discrepancy between proposed mechanisms for Argyrodites and other solid state electrolytes, indicating that the defect structure is not well understood yet. Based on our early RT XPDF results, we have strong indications to believe that the understanding of the structure so far may be too simplified.
DOI: 10.5286/isis.e.rb1920392-1
title: Understanding the local structure of Li6PS5X (X = Cl, Br, I) and its impact on Li migration  a neutron PDF study

description: Cubic Argyrodites, Li6PS5X, are promising candidates for solid state electrolytes and much effort is put in understanding their structure property relation. NMR studies revealed, that within the anion sublattice, Cl- and Br- tend to be statistically distributed, while I- occupies a separate crystallographic position. It is of immediate need to understand the role of occupational defects and distortions in these materials in detail, since such structural peculiarities highly correlate with ion migration. A review of the effect of lattice distortions and ion migration barriers revealed a discrepancy between proposed mechanisms for Argyrodites and other solid state electrolytes, indicating that the defect structure is not well understood yet. Based on our early RT XPDF results, we have strong indications to believe that the understanding of the structure so far may be too simplified.
DOI: 10.7910/dvn/qbqfxa/tydxcf
title: 170_20120831191214Mh_GONG_2.jpg

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DOI: 10.7910/dvn/qbqfxa/8si0js
title: 76_20140610001454Bh_GONG_1.jpg

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DOI: 10.7910/dvn/qbqfxa/bx53zr
title: 74_20140709163354Bh_GONG_1.jpg

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DOI: 10.7910/dvn/qbqfxa/fr3duu
title: 170_20120831192954Bh_GONG_4.jpg

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DOI: 10.7910/dvn/qbqfxa/heftsk
title: 76_20140610124914Th_GONG_3.jpg

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DOI: 10.7910/dvn/qbqfxa/hi8hag
title: 73_20140801_183045_hmi.M_45s_4k.jpg

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DOI: 10.7910/dvn/qbqfxa/k3aktb
title: 77_20140604225554Bh_GONG_1.jpg

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DOI: 10.7910/dvn/qbqfxa/kmegcz
title: 73_20140801_184245_hmi.M_45s_4k.jpg

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DOI: 10.7910/dvn/qbqfxa/qsqnwn
title: 76_20140613193654Bh_GONG_1.jpg

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DOI: 10.7910/dvn/qbqfxa/bwyjor
title: 78_20140429232254Bh_GONG_3.jpg

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DOI: 10.7910/dvn/qbqfxa/jcdn4k
title: 78_20140429225654Bh_GONG_1.jpg

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DOI: 10.7910/dvn/qbqfxa/jnpipw
title: 78_20140429221454Bh_GONG_3.jpg

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DOI: 10.7910/dvn/qbqfxa/qhtskj
title: 78_20140429093114Th_GONG_1.jpg

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DOI: 10.7910/dvn/qbqfxa/sgfcer
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DOI: 10.7910/dvn/qbqfxa/vniaee
title: 79_20140418130134Ch_GONG_1.jpg

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DOI: 10.7910/dvn/qbqfxa/vo4fz3
title: 78_20140615_132230_hmi.M_45s_4k.jpg

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DOI: 10.7910/dvn/qbqfxa/z1pdim
title: 79_20140418091214Th_GONG_4.jpg

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DOI: 10.7910/dvn/qbqfxa/6sannt
title: 81_20140401083214Th_GONG_2.jpg

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DOI: 10.7910/dvn/qbqfxa/ghxz7y
title: 80_20140402_134545_hmi.M_45s_4k.jpg

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DOI: 10.7910/dvn/qbqfxa/hdj66y
title: 80_20140402_132015_hmi.M_45s_4k.jpg

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DOI: 10.7910/dvn/qbqfxa/hu8mxj
title: 79_20140418_132530_hmi.M_45s_4k.jpg

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DOI: 10.7910/dvn/qbqfxa/lipena
title: 80_20140402065854Uh_GONG_2.jpg

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DOI: 10.7910/dvn/qbqfxa/qan513
title: 80_20140402_133600_hmi.M_45s_4k.jpg

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DOI: 10.7910/dvn/qbqfxa/snog2n
title: 80_20140405_132745_hmi.M_45s_4k.jpg

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DOI: 10.7910/dvn/qbqfxa/ussgge
title: 80_20140402010934Lh_GONG_1.jpg

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DOI: 10.7910/dvn/qbqfxa/zp1t0u
title: 80_20140402204334Ch_GONG_4.jpg

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DOI: 10.7910/dvn/qbqfxa/8gj7sx
title: 83_20140323190854Bh_GONG_3.jpg

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DOI: 10.7910/dvn/qbqfxa/ddxcna
title: 82_20140329172554Bh_GONG_4.jpg

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DOI: 10.7910/dvn/qbqfxa/dsgqp9
title: 81_20140401185354Bh_GONG_4.jpg

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DOI: 10.7910/dvn/qbqfxa/gs2gv6
title: 81_20140401_163645_hmi.M_45s_4k.jpg

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DOI: 10.7910/dvn/qbqfxa/pvu8tp
title: 83_20140323_034415_hmi.M_45s_4k.jpg

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DOI: 10.7910/dvn/qbqfxa/uo44fv
title: 82_20140329124934Ch_GONG_2.jpg

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DOI: 10.7910/dvn/qbqfxa/xrgltn
title: 81_20140401150434Ch_GONG_3.jpg

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DOI: 10.7910/dvn/qbqfxa/zuulfb
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DOI: 10.17632/5ws84hrx9d.1
title: Data for: Pediatric Emergency Department Visit Characteristics of the Patients on the Ketogenic Diet
DOI: 10.7910/dvn/qbqfxa/679gkx
title: 84_20140320_044415_hmi.M_45s_4k.jpg

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