cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0100163.10fu
title: SH0100163.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive108387.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108388.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100164.10fu
title: SH0100164.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive108388.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108389.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100165.10fu
title: SH0100165.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive108389.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108390.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108390.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100166.10fu
title: SH0100166.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive108391.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108391.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100167.10fu
title: SH0100167.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive108392.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108392.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100168.10fu
title: SH0100168.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.18165669
title: EFFET DE L'ASSISTANCE ALIMENTAIRE SUR LA SECURITE ALIMENTAIRE DES PERSONNES DEPLACEES INTERNES (PDI) DE LA COMMUNE DE KAYA

description: L’objectif de la présente recherche est d’analyser les effets de l’assistance alimentaire sur la sécurité alimentaire des personnes déplacées internes (PDI) de la commune de Kaya. Trois composantes de la sécurité alimentaire ont été examinées : le score de consommation alimentaire (SCA), le score de diversité alimentaire (SDA) et les dépenses alimentaires (DA). Les données ont été collectées auprès de 300 chefs de ménage PDI de cette commune, et un modèle logit ordonné a été utilisé comme outil d’analyse. Les résultats des estimations révèlent que l’indice composite de l’assistance alimentaire a un effet positif et significatif sur les dépenses alimentaires. Cependant, son impact sur le score de diversité alimentaire(SDA) et la score de consommation alimentaire (SCA) reste limité, ce qui met en évidence l’importance de considérer les composantes désagrégées de l’assistance alimentaire. La qualité et la fréquence des aides apparaissent comme des leviers clés pour renforcer la sécurité alimentaire des PDI. Par ailleurs, le revenu et le niveau d'instruction apparaissent comme les déterminants majeurs de la sécurité alimentaire.
DOI: 10.13145/bacdive108393.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108393.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100169.10fu
title: SH0100169.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.18165668
title: EFFET DE L'ASSISTANCE ALIMENTAIRE SUR LA SECURITE ALIMENTAIRE DES PERSONNES DEPLACEES INTERNES (PDI) DE LA COMMUNE DE KAYA

description: L’objectif de la présente recherche est d’analyser les effets de l’assistance alimentaire sur la sécurité alimentaire des personnes déplacées internes (PDI) de la commune de Kaya. Trois composantes de la sécurité alimentaire ont été examinées : le score de consommation alimentaire (SCA), le score de diversité alimentaire (SDA) et les dépenses alimentaires (DA). Les données ont été collectées auprès de 300 chefs de ménage PDI de cette commune, et un modèle logit ordonné a été utilisé comme outil d’analyse. Les résultats des estimations révèlent que l’indice composite de l’assistance alimentaire a un effet positif et significatif sur les dépenses alimentaires. Cependant, son impact sur le score de diversité alimentaire(SDA) et la score de consommation alimentaire (SCA) reste limité, ce qui met en évidence l’importance de considérer les composantes désagrégées de l’assistance alimentaire. La qualité et la fréquence des aides apparaissent comme des leviers clés pour renforcer la sécurité alimentaire des PDI. Par ailleurs, le revenu et le niveau d'instruction apparaissent comme les déterminants majeurs de la sécurité alimentaire.
DOI: 10.6084/m9.figshare.c.3613859_d7
title: Additional file 5: Table S2.  of Bmi-1 regulates stem cell-like properties of gastric cancer cells via modulating miRNAs

description: The correlation between Bmi-1 and stem cell markers in gastric cancer tissues.Â (XLS 14 kb)
DOI: 10.6084/m9.figshare.c.3613865_d6
title: Additional file 4: Table S2. of Differential expression profiling of the early response to Ustilaginoidea virens between false smut resistant and susceptible rice varieties

description: The differentially expressed genes that exhibited opposite expression patterns between IR28 and LYP9 at 24 hpi and 48 hpi. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3613859_d6
title: Additional file 6:Table S3.  of Bmi-1 regulates stem cell-like properties of gastric cancer cells via modulating miRNAs

description: Frequencies of altered expression of Bmi-1,miR-21 and miR-34a in the 74 gastric cancer tissues. (XLS 14 kb)
DOI: 10.6084/m9.figshare.c.3613865_d5
title: Additional file 7: Table S4. of Differential expression profiling of the early response to Ustilaginoidea virens between false smut resistant and susceptible rice varieties

description: Protein kinase genes in the GO term â  transferase activityâ   (GO: 0016740) that were induced by U. virens in IR28 and repressed in LYP9. (XLSX 21 kb)
DOI: 10.5281/zenodo.10575342
title: Quantifying the detection sensitivity and precision of qPCR and ddPCR mechanisms for eDNA samples.
DOI: 10.5281/zenodo.10575343
title: Quantifying the detection sensitivity and precision of qPCR and ddPCR mechanisms for eDNA samples.
DOI: 10.6084/m9.figshare.c.3613760_d11
title: MOESM9 of RNA-seq analysis of Pichia anomala reveals important mechanisms required for survival at low
            pH

description: Additional file 9: Table S3. Statistics for the structural comparison from RaptorX.
DOI: 10.6084/m9.figshare.c.3613760_d9
title: MOESM8 of RNA-seq analysis of Pichia anomala reveals important mechanisms required for survival at low
            pH

description: Additional file 8: Table S2. Expression levels of genes involved in respiration and proton efflux.
DOI: 10.6084/m9.figshare.c.3613760_d7
title: MOESM10 of RNA-seq analysis of Pichia anomala reveals important mechanisms required for survival at low
            pH

description: Additional file 10: Table S4. Components of the respiratory chain in P. anomala that have homologs in S. cerevisiae obtained from a protein BLAST.
DOI: 10.6084/m9.figshare.c.3613760_d6
title: MOESM3 of RNA-seq analysis of Pichia anomala reveals important mechanisms required for survival at low
            pH

description: Additional file 3: Table S1. Comparison of the three de novo assemblers used in this study.
DOI: 10.25810/djgt-h013
title: FIRED ANDORRA

description: This is event-level polygons for the fire event delineation (FIRED) product for ANDORRA from November 2000  to January 2024. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v061/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (https://github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 1 pixels and 5 days. See the associated paper for more details on the methods and more:

Balch, J.K.; St. Denis, L.A.; Mahood, A.L.; Mietkiewicz, N.P.; Williams, T.M.; McGlinchy, J.; Cook, M.C. FIRED (Fire Events Delineation): An Open, Flexible Algorithm and Database of US Fire Events Derived from the MODIS Burned Area Product (2001–2019). Remote Sens. 2020, 12, 3498. https://doi.org/10.3390/rs12213498
DOI: 10.6084/m9.figshare.c.3613520_d2
title: Additional file 2: Table S7. of Comprehensive comparison of molecular portraits between cell lines and tumors in breast cancer

description: Correlation coefficient r across 4 genomics level comparison in breast cancer. (XLSX 1527 kb)
DOI: 10.6084/m9.figshare.c.3613520_d1
title: Additional file 1: Table S1. of Comprehensive comparison of molecular portraits between cell lines and tumors in breast cancer

description: The list of TCGA tumor samples used on each platform with associated subtype calls from each technology platforms, and clinical data. Table S2. The list of cell lines samples used on each platform with associated subtype calls from each technology platforms, and its annotation data. Table S3. The list of tumors samples from GEO used on gene expression comparison with associated ER, PR, HER2 status. Table S4. Mutation rate per Mb in cell lines and tumors in breast cancer. (Common genes). Table S5. Top 10Â % genes of copy number variation in cell lines and tumors. Table S6. The comparison of phosphorylation protein vs gene expression in cell lines and tumors. (XLSX 2941 kb)
DOI: 10.6084/m9.figshare.c.3613475_d10
title: Additional file 6: Table S3. of Comparative genomics reveals Cyclospora cayetanensis possesses coccidia-like metabolism and invasion components but unique surface antigens

description: Comparison of essential cellular metabolic pathways among some common apicomplexan parasites. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.c.3613475_d7
title: Additional file 8: Table S5. of Comparative genomics reveals Cyclospora cayetanensis possesses coccidia-like metabolism and invasion components but unique surface antigens

description: Members of a major group of paralogs detected in the Cyclospora cayetanensis genome and results of BLASTP against the GenBank protein database. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.28017227
title: qPCR Data for Systemic Leaf and Root-to-Shoot Signaling for Col-0 and CNGC Mutants in <i>Arabidopsis thaliana</i>.

description: Following the wounding of a leaf (n), leaves (n+4) and (n+5) were collected 0 and 40 min later to analysis of <i>JAZ5</i>, <i>JAZ7</i>, and <i>CAMTA3</i> expression for Col-0 and CNGC mutants in <i>Arabidopsis thaliana</i>. Similarly, following root wounding, shoot tissue was collected for Col-0 and CNGC mutants 0 and 40 min later for analysis of <i>JAZ5</i>, <i>JAZ7</i>, and <i>CAMTA3</i> expression. Files with CNGC in the name are systemic leaf signaling and files with R2S in the name are for root-to-shoot signaling. All contain various combinations of the CNGC mutants.
DOI: 10.15468/dl.e5c45x
title: Occurrence Download

description: A dataset containing 70909 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calidris alpina (Linnaeus, 1758)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70909 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032213-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3613253_d11
title: Additional file 1: of Genome-wide identification of long noncoding RNA genes and their potential association with fecundity and virulence in rice brown planthopper, Nilaparvata lugens

description: The sequences of identified lncRNAs in FASTA format. (FASTA 2166Â kb)
DOI: 10.6084/m9.figshare.c.3613253_d12
title: Additional file 12: Table S8. of Genome-wide identification of long noncoding RNA genes and their potential association with fecundity and virulence in rice brown planthopper, Nilaparvata lugens

description: Specifically expressed lncRNAs in the adult of HFP population. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3613253_d10
title: Additional file 9: Table S5. of Genome-wide identification of long noncoding RNA genes and their potential association with fecundity and virulence in rice brown planthopper, Nilaparvata lugens

description: Specifically expressed lncRNAs in the salivary gland of TN1 strain of N. lugens. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3613253_d8
title: Additional file 13: Table S9. of Genome-wide identification of long noncoding RNA genes and their potential association with fecundity and virulence in rice brown planthopper, Nilaparvata lugens

description: Specifically expressed lncRNAs in LFP the 5th instar nymph of LFP population (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3613253_d9
title: Additional file 8: Table S4. of Genome-wide identification of long noncoding RNA genes and their potential association with fecundity and virulence in rice brown planthopper, Nilaparvata lugens

description: Specifically expressed lncRNAs in the salivary gland of Mudgo strain of N. lugens. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3613253_d5
title: Additional file 6: Table S2. of Genome-wide identification of long noncoding RNA genes and their potential association with fecundity and virulence in rice brown planthopper, Nilaparvata lugens

description: Specifically expressed lncRNAs in the fat body of Mudgo strain of N. lugens. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3613253_d4
title: Additional file 11: Table S7. of Genome-wide identification of long noncoding RNA genes and their potential association with fecundity and virulence in rice brown planthopper, Nilaparvata lugens

description: Specifically expressed lncRNAs in the adult of LFP population. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3613151_d7
title: Additional file 9: Table S5. of Genome-wide analysis of excretory/secretory proteins in Echinococcus multilocularis: insights into functional characteristics of the tapeworm secretome

description: Positively selected genes of ES protein coding genes in E. multilocularis. (XLS 14 kb)
DOI: 10.6084/m9.figshare.c.3613151_d3
title: Additional file 1: Table S1. of Genome-wide analysis of excretory/secretory proteins in Echinococcus multilocularis: insights into functional characteristics of the tapeworm secretome

description: Comprehensive annotation information for all the predicted ES proteins in E. multilocularis. (XLS 116 kb)
DOI: 10.6084/m9.figshare.c.3613151_d4
title: Additional file 7: Table S4. of Genome-wide analysis of excretory/secretory proteins in Echinococcus multilocularis: insights into functional characteristics of the tapeworm secretome

description: Transcription analysis of all predicted ES proteins in E. multilocularis. (XLS 94 kb)
DOI: 10.6084/m9.figshare.c.3613151_d2
title: Additional file 2: Table S2. of Genome-wide analysis of excretory/secretory proteins in Echinococcus multilocularis: insights into functional characteristics of the tapeworm secretome

description: The complete domain annotations of all predicted ES proteins in E. multilocularis using InterProScan. (XLS 67 kb)