cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5319sd22
title: MassIVE MSV000093391 - DDA proteomics of the supernatants of culture of precision lung cut slices (PCLS)
title: We profiled the proteome of the supernatant of Precision Cut Lung Slices (PCLS) exposed to pro-fibrotic cocktails to identify secreted proteins by PCLS turning fibrotic. The proteins were extracted using the MPLEx method, peptides were reduced, alkylated, and digested with trypsin and 5 ul of 0.1 ug/ul were injected on LC-MS/MS on a QE-HFX instrument. The analysis was performed in DDA label free mode and searched using MaxQuant against the human and bovine proteome as the supernatant included fetal bovine serum (FBS).
DOI: 10.3886/h4yd-8n72
title: Namibia Compact - Regional Study and Resource Center: Final Analysis Report
DOI: 10.25919/gp03-5n30
title: Parkes observations for project P1295 semester 2023OCTS_02

description: We propose observing time with the Parkes telescope to investigate four ``spider" millisecond pulsars (MSPs), PSR J1048+2339 (a redback spider), PSR J1908+2105 (an MSP that occupies a region of parameter space between black widows and redbacks), PSR J2052+1219 and PSR J2256-1024 (black widow spiders). Spider MSPs are commonly seen to exhibit frequency-dependent eclipsing. Observations with wide bandwidth telescopes like Parkes UWL (700-4000 MHz) will be extremely useful to study the eclipse mechanisms in these systems. Eclipse properties of spider MSPs are hitherto unexplored at the frequency regime available with the Parkes UWL receiver. We propose to investigate a sample of 4 MSPs mentioned above (for which polarization has not been studied) with the Parkes telescope using the UWL receiver in full polar mode, which will be addressed with this proposal. One of the aims is to model the eclipse phase spectra using wideband observations of these pulsars in an optically thick-to-thin transitioning regime (optical depth nearly 1), to explore the eclipse mechanism. Observing the possible changes in rotation measure (RM) at eclipse ingress and egress will allow us to probe the magnetic field in the eclipse boundaries. We request to cover nearly one full orbit for each of these MSPs. Thus we propose 23 hours of observing time including time for setup and calibration in each epoch with the Parkes UWL receiver for the investigation of the eclipse mechanism as well as the polarization, profile evolution, and spectra of four spider MSPs.
DOI: 10.5519/qd.p5krp4aq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.24557167
title: Integración Figshare

description: Archivo subido a Figshare vía api rest
DOI: 10.6084/m9.figshare.24557167.v1
title: Integración Figshare

description: Archivo subido a Figshare vía api rest
DOI: 10.6084/m9.figshare.24088263
title: Sentence Comprehension May Not Necessarily Rely on Syntactic Processing: Evidence from Chinese speakers indicates a lack of reliance on syntactic processing for comprehending English sentences

description: Syntactic processing is widely believed to aid in sentence comprehension. However, parsing often requires a prior sentence interpretation in practice. This circular logic indicates the limited role of syntactic processing in sentence understanding, prompting us to question whether sentence comprehension necessitates parsing. This study conducts two empirical experiments with statistical analysis, revealing that many Chinese speakers do not heavily rely on syntactic processing to comprehend English sentences. It elucidates three states in which parsing is utilized for sentence interpretation: the attachment of syntactic processing to sentence comprehension, the partial detachment of syntactic processing from sentence comprehension, and the complete detachment of syntactic processing from sentence comprehension. The study explores the reasons behind partial and complete detachment, thereby establishing a robust foundation for the development of an innovative parsing method to enhance sentence comprehension skills.
DOI: 10.5066/p9w4srhq
title: Louisiana Outer Coast Restoration Project &amp;amp;ndash; 2022 habitat map, North Breton Island

description: This data release includes 2022 data for the Louisiana Outer Coast Restoration Project for North Breton Island. Specifically, this data release includes a detailed habitat map, general habitat map, georeferenced imagery, and a bare-earth digital elevation model (DEM) developed from light detection and ranging data. These habitat maps are developed using the methods and classification scheme from Louisiana Coastal Protection and Restoration Authority?s (CPRA) Barrier Island Comprehensive Monitoring (BICM) program. For more details on BICM habitat classes, see the Entity and Attribute Information section of the metadata. Please consult the accompanying readME.txt file for information and recommendations on the contents of this dataset (that is, dataset and recommended symbology). For more information about BICM habitat mapping, see Enwright and others (2020).
DOI: 10.25442/hku.24458485
title: Supporting data for "Developing a co-culture system for the study of macrophage function and its therapeutic potential in acute myeloid leukaemia"

description: This is the supporting data for the thesis "Developing a co-culture system for the study of macrophage function and its therapeutic potential in acute myeloid leukaemia". In the thesis, multiple experiments were carried out, including cell growth assay, <i>in vitro</i> AML-macrophage co-cultures, gene expression data. The raw data of the figures in the thesis are packed as excel files and are uploaded for references.
DOI: 10.25442/hku.24458485.v1
title: Supporting data for "Developing a co-culture system for the study of macrophage function and its therapeutic potential in acute myeloid leukaemia"

description: This is the supporting data for the thesis "Developing a co-culture system for the study of macrophage function and its therapeutic potential in acute myeloid leukaemia". In the thesis, multiple experiments were carried out, including cell growth assay, <i>in vitro</i> AML-macrophage co-cultures, gene expression data. The raw data of the figures in the thesis are packed as excel files and are uploaded for references.
DOI: 10.25442/hku.24463108
title: <b><i>Supporting data for</i></b> "Exploring the heterogeneity of hypoxia response and investigating the role of synonymous mutations in hepatocellular carcinoma: a multi-omics analysis"

description: The objective of this study was to uncover the heterogeneity of the hypoxia response in hepatocellular carcinoma (HCC) and to identify functional synonymous mutations in HCC patients.<br>This dataset comprises processed data utilized in our research. The expression fold change of hypoxia-inducible genes between hypoxia and normoxia conditions was calculated using RNA-seq data. HIF1A ChIP-seq, ATAC-seq, and RRBS were performed and subsequently analyzed with MACS2 and Bismark tools. Additionally, the scRNA-seq data, derived from the 10x Genomics platform as presented by Ho D et al., was analyzed using Seurat. Synonymous nucleotide variations were identified from the whole exome sequencing (WES) data using Genome Analysis Toolkit (GATK).<br>All sequencing methodologies and data analysis adhered to standard workflows, barring instances where specific instructions were provided.
DOI: 10.25442/hku.24463108.v1
title: <b><i>Supporting data for</i></b> "Exploring the heterogeneity of hypoxia response and investigating the role of synonymous mutations in hepatocellular carcinoma: a multi-omics analysis"

description: The objective of this study was to uncover the heterogeneity of the hypoxia response in hepatocellular carcinoma (HCC) and to identify functional synonymous mutations in HCC patients.<br>This dataset comprises processed data utilized in our research. The expression fold change of hypoxia-inducible genes between hypoxia and normoxia conditions was calculated using RNA-seq data. HIF1A ChIP-seq, ATAC-seq, and RRBS were performed and subsequently analyzed with MACS2 and Bismark tools. Additionally, the scRNA-seq data, derived from the 10x Genomics platform as presented by Ho D et al., was analyzed using Seurat. Synonymous nucleotide variations were identified from the whole exome sequencing (WES) data using Genome Analysis Toolkit (GATK).<br>All sequencing methodologies and data analysis adhered to standard workflows, barring instances where specific instructions were provided.
DOI: 10.25442/hku.24487225
title: <b><i>Supporting data for</i></b> “Measuring Early Home Learning Environments in China”

description: This dataset contains the data collected for the dissertation “Measuring Early Home Learning Environments in China”. Chapter Six (Study Four) of this thesis aims to improve the home learning environment (HLE) measure in population-level surveys by developing and validating a comprehensive tool for assessing the HLE of preschool-aged children in the Chinese context. The study used a modified E-Delphi method to evaluate the content validity of an initial item pool assessing the HLE of Chinese preschool-aged children based on experts' judgment regarding each item's relevance, clarity, cultural and age appropriateness, and importance. Items that achieved consensus by experts were tested with Chinese caregiver-child dyads to examine the scale’s reliability and validity. This dataset includes data collected from two E-Delphi surveys and the parent survey. Sixteen Chinese and international experts participated in the two-round surveys. Thirty-three children and their parents participated in the pilot study in Guangdong, China. Data was collected from February to September 2023.
DOI: 10.25442/hku.24487225.v1
title: <b><i>Supporting data for</i></b> “Measuring Early Home Learning Environments in China”

description: This dataset contains the data collected for the dissertation “Measuring Early Home Learning Environments in China”. Chapter Six (Study Four) of this thesis aims to improve the home learning environment (HLE) measure in population-level surveys by developing and validating a comprehensive tool for assessing the HLE of preschool-aged children in the Chinese context. The study used a modified E-Delphi method to evaluate the content validity of an initial item pool assessing the HLE of Chinese preschool-aged children based on experts' judgment regarding each item's relevance, clarity, cultural and age appropriateness, and importance. Items that achieved consensus by experts were tested with Chinese caregiver-child dyads to examine the scale’s reliability and validity. This dataset includes data collected from two E-Delphi surveys and the parent survey. Sixteen Chinese and international experts participated in the two-round surveys. Thirty-three children and their parents participated in the pilot study in Guangdong, China. Data was collected from February to September 2023.
DOI: 10.25442/hku.24488365
title: Supporting Data for "(Re)Searching the Multilingual in Hong Kong: A Language Policy Case Study in a Language-Minoritised Educational Context"

description: Examining language policy effects in an ethnolinguistically diverse and minoritised educational context in Hong Kong, this study's research design employed both discourse analytic and ethnographic methodologies. Contextualised through discourse analyses of language policy documents, this case study's dataset includes raw data generated from school participant observations (gathering of school materials and images, observation/fieldnotes and students' creation of multimodal portfolios) and participant interactions (audio recordings from individual and group interviews). Accompanying interview transcripts, annotations, ethical and consent documentation is also provided.<br>
DOI: 10.25442/hku.24488365.v1
title: Supporting Data for "(Re)Searching the Multilingual in Hong Kong: A Language Policy Case Study in a Language-Minoritised Educational Context"

description: Examining language policy effects in an ethnolinguistically diverse and minoritised educational context in Hong Kong, this study's research design employed both discourse analytic and ethnographic methodologies. Contextualised through discourse analyses of language policy documents, this case study's dataset includes raw data generated from school participant observations (gathering of school materials and images, observation/fieldnotes and students' creation of multimodal portfolios) and participant interactions (audio recordings from individual and group interviews). Accompanying interview transcripts, annotations, ethical and consent documentation is also provided.<br>
DOI: 10.25442/hku.24056115
title: Supporting data for "The Role of JAK/STAT Signaling Pathway in the Interaction of Bone Marrow Mesenchymal Stromal Cells on Neuroblastoma"

description: The dataset is supporting for my thesis "The Role of JAK/STAT Signaling Pathway in the Interaction of Bone Marrow Mesenchymal Stromal Cells on Neuroblastoma".Our project mainly focused on the interaction between neuroblastoma and mesenchymal stromal cells.The files are divided to five chapters.Chapter1 contains the results of experiments tested for the proliferative ability of cells, including colony formation assay, MTT assay and trypan blue staining assay."Chapter2 contains the results of experiments tested for the migration ability of cells, including scratch assay and transwell assay."Chapter3 contains the results of experiments tested by flow cytometry."Chapter4 and Chapter 5 contains the results of qPCR assay and western blot assay.
DOI: 10.25442/hku.24056115.v1
title: Supporting data for "The Role of JAK/STAT Signaling Pathway in the Interaction of Bone Marrow Mesenchymal Stromal Cells on Neuroblastoma"

description: The dataset is supporting for my thesis "The Role of JAK/STAT Signaling Pathway in the Interaction of Bone Marrow Mesenchymal Stromal Cells on Neuroblastoma".Our project mainly focused on the interaction between neuroblastoma and mesenchymal stromal cells.The files are divided to five chapters.Chapter1 contains the results of experiments tested for the proliferative ability of cells, including colony formation assay, MTT assay and trypan blue staining assay."Chapter2 contains the results of experiments tested for the migration ability of cells, including scratch assay and transwell assay."Chapter3 contains the results of experiments tested by flow cytometry."Chapter4 and Chapter 5 contains the results of qPCR assay and western blot assay.
DOI: 10.25442/hku.24145179
title: Supporting data for “Linear Elastic Topology Optimization and Additive Manufacturing of Planar Steel Joints: Numerical Simulation and Experimental Investigation”

description: The files are data files with the .xlsx extension, totaling 39 individual files corresponding to experimental datasets. Each data file is approximately 30 KB in size. These files can be opened using Excel software. All data files are distinct and not duplicated. The data originates from the Civil Engineering Laboratory data logger at the LG Building of the University of Hong Kong. No third-party data sources were involved.
DOI: 10.25442/hku.24145179.v1
title: Supporting data for “Linear Elastic Topology Optimization and Additive Manufacturing of Planar Steel Joints: Numerical Simulation and Experimental Investigation”

description: The files are data files with the .xlsx extension, totaling 39 individual files corresponding to experimental datasets. Each data file is approximately 30 KB in size. These files can be opened using Excel software. All data files are distinct and not duplicated. The data originates from the Civil Engineering Laboratory data logger at the LG Building of the University of Hong Kong. No third-party data sources were involved.
DOI: 10.5439/2204486
title: Doppler spectra from ARM Doppler Lidar during ARMing the Edge

description: There is a need for long-term observations of cloud and precipitation fall speeds in validating and improving rainfall forecasts from climate models. To this end, the U.S. Department of Energy Atmospheric Radiation Measurement (ARM) user facility Southern Great Plains (SGP) site at Lamont, Oklahoma, hosts five ARM Doppler lidars that can measure cloud and aerosol properties. In particular, the ARM Doppler lidars record Doppler spectra that contain information about the fall speeds of cloud and precipitation particles. In this dataset, we provide the Doppler spectra from the ARM Doppler lidar at C1 recorded in April 2022 during ARMing the Edge.
DOI: 10.25919/48a5-6102
title: East Australian Current individual mooring gridded product - daily and 10-20m depth gridded

description: This daily- and depth-gridded product of currents, temperature and salinity (one file per mooring) is produced from individual instrument files collected during six 18-month deployments in the East Australian Current (EAC) off Brisbane, Australia (2012-2022). As described in the 'Lineage' Section, there are two versions of each variable (TEMP, UCUR, VCUR, PSAL) in these files. One has missing data with fill values and the *_FILLED variable has missing data filled using a neural network Self Organising Maps (SOM). The data can be used for time series analysis of individual moorings in the EAC deployments. The dataset is fully described in: Sloyan, B., Cowley, R., and Chapman, C.C. (2023). East Australian Current velocity, temperature and salinity data products. Nature Scientific Data. Submitted
DOI: 10.6084/m9.figshare.24557083
title: <b>Genome file for SNPGT make Ref</b>

description: This is the demo data for <b>WinSNPGT-mkRef</b>.We have developed a toolkit to call variant loci on the Windows system, <b>WinSNPGT</b>. It can obtain the genotypes of the raw sequencing data for the snp loci specified in our datasets, which is very friendly for those with little Linux operating experience. <b>WinSNPGT-mkRef</b> is an extended function plug-in of WinSNPGT that provides users with customized reference genome construction.
DOI: 10.6084/m9.figshare.24557083.v1
title: <b>Genome file for SNPGT make Ref</b>

description: This is the demo data for <b>WinSNPGT-mkRef</b>.We have developed a toolkit to call variant loci on the Windows system, <b>WinSNPGT</b>. It can obtain the genotypes of the raw sequencing data for the snp loci specified in our datasets, which is very friendly for those with little Linux operating experience. <b>WinSNPGT-mkRef</b> is an extended function plug-in of WinSNPGT that provides users with customized reference genome construction.
DOI: 10.6084/m9.figshare.24557203
title: data and material

description: Syntactic processing is widely believed to aid in sentence comprehension. However, parsing often requires a prior sentence interpretation in practice. This circular logic indicates the limited role of syntactic processing in sentence understanding, prompting us to question whether sentence comprehension necessitates parsing. This study conducts two empirical experiments with statistical analysis, revealing that many Chinese speakers do not heavily rely on syntactic processing to comprehend English sentences. It elucidates three states in which parsing is utilized for sentence interpretation: the attachment of syntactic processing to sentence comprehension, the partial detachment of syntactic processing from sentence comprehension, and the complete detachment of syntactic processing from sentence comprehension. The study explores the reasons behind partial and complete detachment, thereby establishing a robust foundation for the development of an innovative parsing method to enhance sentence comprehension skills.
DOI: 10.6084/m9.figshare.24547162
title: Simultaneous single-cell three-dimensional genome and gene expression profiling uncovers dynamic enhancer connectivity underlying olfactory receptor choice

description: This item hosts LiMCA source data files. Also see https://github.com/zhang-jiankun/LiMCA.
DOI: 10.6084/m9.figshare.24547162.v3
title: Simultaneous single-cell three-dimensional genome and gene expression profiling uncovers dynamic enhancer connectivity underlying olfactory receptor choice

description: This item hosts LiMCA source data files. Also see https://github.com/zhang-jiankun/LiMCA.
DOI: 10.6073/pasta/2c3012467a2a667fa05faad78a926d36
title: Pika demography data for west knoll and Indian Peaks wilderness, 2008 - ongoing.

description: Pikas are captured, anesthetized, marked with colored ear-tags, non-lethally sampled, and released at point of capture during June-October. Study sites include a gradient of elevation and slope aspect, allowing a comparative study of pika response to variation in climate and sub-surface microclimate. Daily variation in snow cover and sub-surface temperatures are measured using data loggers placed within the territories of marked pikas. Focal territories are revisited at least once to characterize available vegetation via transect sampling and at least annually to service data loggers and record pika survival. Samples collected for genetic and physiological studies include ectoparasites, blood, saliva, urine, feces and hair as well as records of sex, stage, reproductive status, weight, foot length and body temperature.
DOI: 10.25345/c5z892r7f
title: MassIVE MSV000093392 - Candidate compounds MS2 Streptomyces Mk37H
title: This strain involves some kinds of peptides like lipopeptides, antimicrobial peptides, cyclic peptides and depsipeptides
DOI: 10.21227/ncs8-g078
title: Sentiment Analysis Approach-digital

description: Compared with traditional finance, digital finance introduces digital technology for financial innovation, which largely reduces financial exclusion and discrimination, but improved financial services, such as mobile payment, online lending, virtual currency, and investment and wealth management, also involve potential risks. Hence, we propose a sentiment analysis model, GABP-News, to study the predictive ability of the information contained in news texts on digital financial development in China. Valence Awareness Dictionary for Sentiment Reasoning (VADER) is utilized to extract helpful information from news texts, and construct two sentiment indices, i.e., news titles and news contents, to test their predictive power respectively. Results demonstrate the usefulness of the GABP-News model for forecasting digital finance, suggesting that using sentiment variables from news titles and contents improves accuracy. It is also noted that the feature variables affecting the development of digital finance are not static, and their significant dynamic changes indicate the uncertainty of predicting digital finance. Finally, the feature variables predicting the development of digital finance are regionally heterogeneous. Compared with news contents sentiment, news title sentiment has a more relevance to each province. And trade openness is more critical for provinces with poorer digital financial development. Meanwhile, government expenditure is a vital feature variable for regions with more developed digital financial development.
DOI: 10.25345/c5th8bz39
title: MassIVE MSV000093393 - chronic carnitine treatment (negative mode)
title: Samples from mice infected and then treated with vehicle, carnitine or benznidazole in the chronic stage of infection. Tissue samples extracted with 50% methanol followed by 3:1 dichloromethane:methanol. C8 chromatography with negative mode data acquisition
DOI: 10.6084/m9.figshare.24556768
title: Output files from PyMoL

description: Conformational structures of 5-aminolevlinic acid dehydratase (ALAD) derived from <i>Homo sapience</i><i> </i>(in blue, PDB 1E51) and <i>Escherichia coli</i><i> </i>(in orange, PDB 1B4E). K13, E87, G131, G268, and A269 on the <i>E. coli</i> ALAD structurally correspond to F12, E89, G133, A274, and AV275 on the <i>H. sapience</i> ALAD, respectively. Porphobilinogen (PGB) products are shown in green wire forms. The figure was prepared using PyMoL (The PyMOL Molecular Graphics System, Version 2.0 Schrödinger, LLC.).