cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/py3859yhnf
title: De Robertis et al, 2017 - Chukchi shelf acoustic-trawl survey (corrected)

description: Abundance estimates of fishes from Acoustic-trawl surveys of the US sector of the Chukchi Sea continental shelf conducted in 2012 and 2013.

These surveys are described in 

De Robertis, A., Taylor, K., Wilson, C., and Farley, E. 2017a. Abundance and Distribution of Arctic cod (Boreogadus saida) and other Pelagic Fishes over the U.S. Continental Shelf of the Northern Bering and Chukchi Seas Deep-Sea Research II, 135: 51-65. http://dx.doi.org/10.1016/j.dsr2.2016.03.002

De Robertis et al. 2017a applied calculations used selectivity relationships from

De Robertis, A., Taylor, K., Williams, K., and Wilson, C. D. 2017b. Species and size selectivity of two midwater trawls used in an acoustic survey of the Alaska Arctic. Deep Sea Research II, 135: 40-50.
http://dx.doi.org/10.1016/j.dsr2.2015.11.014

An error was discovered in a parameter these selectivity calculations, and a correction publication was prepared
 
De Robertis, A., Taylor, K., Wilson, C., and Williams, K. 2021. Corrigendum to: “Species and size selectivity of two midwater trawls used in an acoustic survey of the Alaska Arctic” (Deep-Sea Res. II 135 (2017) 40-50). Deep Sea Research II https://doi.org/10.1016/j.dsr2.2021.104997.

These files contain abundance data from De Robertis et al., 2017a reprocessed to use the corrected selectivity values given in table 1 of De Robertis et al., 2021.

The abundance change to only a small degree (see De Robertis et al., 2021).  These revised data should be used in future studies.  

We have also provided estimates of walleye pollock abundance that were not included in the original publication - these were computed with the methods described in De Robertis et al., 2017a,.

Changes in second version posted to Mendeley data ( files marked v4)
increased numerical precision of positions in csv files
Added UTC time

data are summarized in 0.5 nautical mile along-track intervals

*along_track_summary*.csv - overall summary for all species
Latitude - degrees N
Longitude - degrees W
Bottom_depth - average bottom depth
Time_UTC - date/time
Fish_38_kHz_sA - nautical area backscattering coefficient (m^2 / nmi^2)  attributed to fish at 38 kHz
Zooplankton_120_kHz_sA- nautical area backscattering coefficient (m^2 / nmi^2)  attributed to zooplankton at 120 kHz
Arctic_cod_No_m_sq - number of fish per meter squared of sea surface
Saffron_cod_No_m_sq - number of fish per meter squared of sea surface
Capelin_No_m_sq - number of fish per meter squared of sea surface
herring_No_m_sq - number of fish per meter squared of sea surface
pollock_No_m_sq- number of fish per meter squared of sea surface


* by_length_alongrack_per_m_squared*.csv  - abundance by length in 1 cm bins for a single species
Latitude - degrees N
Longitude - degrees W
Bottom_depth - average bottom depth
Time_UTC - date/time
len_1_cm - number of fish per m^2 in the 0.5 to 1.5 cm size class
len_2_cm - number of fish per m^2 in the 1.5 to 2.5 cm size class
additional size classes follow the same format
DOI: 10.6084/m9.figshare.14345423.v1
title: 293T-U1wt_clean

description: 293T-U1wt_clean
DOI: 10.6084/m9.figshare.17427509.v1
title: Supplementary Material for: Effects of Sodium-Glucose Cotransporter 2 on Amputation Events: A Systematic Review and Meta-Analysis of Randomized-Controlled Trials

description: <b><i>Introduction:</i></b> Sodium-glucose cotransporter 2 (SGLT2) inhibitors are increasingly utilized in the treatment of diabetes mellitus as well as therapeutic extra-glycemic effects. However, there are still concerns over complications such as amputation events, given the results from the Canagliflozin Cardiovascular Assessment Study (CANVAS) trial. Hence, we conducted a systematic review and meta-analysis of randomized-controlled trials to investigate the effect of SGLT2 inhibitors on amputation events. <b><i>Methods:</i></b> Four electronic databases (PubMed, Embase, Cochrane, and SCOPUS) were searched on November 21, 2020, for articles published from January 1, 2000, up to November 21, 2020, for studies that examined the effect of SGLT2 inhibitors on amputation events. Random-effect pair-wise meta-analysis for hazard ratios and fixed-effect Peto odds ratio meta-analysis were utilized to summarize the studies. <b><i>Results:</i></b> A total of 15 randomized-controlled trials were included with a combined cohort of 63,716 patients. We demonstrated that there was no significant difference in amputation events across different types of SGLT2 inhibitors, different baseline populations, and different duration of SGLT2 inhibitor use. <b><i>Discussion/Conclusions:</i></b> In this meta-analysis, SGLT2 inhibitors were not associated with a significant difference in amputation events.
DOI: 10.6084/m9.figshare.24031866.v4
title: Genome assembly and annotation files for <i>Aquilaria</i><i> </i><i>yunnanensis.</i>

description: 基因组组装（Aquilaria_yunnanensis.fasta）和注释文件（A.yunnanensis.cds.fasta.gz、A.yunnanensis.pep.fasta.gz、A.yunnanensis.gff3.gz和repeat.gff.gz<i>.</i>
DOI: 10.6084/m9.figshare.26499562.v1
title: Investigating the Effect of Fe-N5 Configuration in the Oxygen Reduction Reaction Using N-Heterocycle Functionalized Carbon Nanotubes

description: Atomic iron embedded in N-doped carbon materials (Fe–N–C) are regarded as the most promising alternative to platinum-based catalysts in anion exchange membrane fuel cells, due to their high oxygen reduction reaction (ORR) activity. The molecular catalyst iron phthalocyanine (FePc) is often employed to explore the correlation between a model single Fe structure and ORR activity. Recent advancements have introduced a penta-coordinated Fe-N5 structure achieved by binding FePc onto pyridine-functionalized carbon surfaces, demonstrating outstanding ORR activities. To investigate the effect of the axial pyridine ligand, in this work, four different N-functionalized carbon nanotubes (N-CNTs) were prepared, each adorned with a unique N-heterocycle (pyridine, quinoline, isoquinoline, or acridine). Subsequent binding of FePc (FePc/N-CNTs) afforded penta-coordinated complexes in all cases. The characterization results demonstrated that the penta-coordination Fe-N5 configuration could be effectively constructed by this method. The ORR activities of these FePc/N-CNTs suggest that the local surface structure around the axial ligand on the functionalized CNTs influences catalytic performance.
DOI: 10.6084/m9.figshare.3171766.v1
title: temperature.csv

description: A subset of data from Kaggle, featuring 7 countries and 16 cities.
DOI: 10.17632/5sdnbktpg6
title: A study of: Selective PP2A enhancement through biased heterotrimer stabilization. Leonard D, Huang W, et al.

description: Here we define the structural and biological basis by which a class of small molecules (lead compound denoted DT-061), selectively binds and stabilizes a single B-subunit containing Protein Phosphatase 2A (PP2A) heterotrimer to drive the targeted dephosphorylation of select PP2A substrates that include c-MYC. This work provides structural and molecular insights into PP2A holoenzyme regulation, identifies a new therapeutic strategy for protein complex targeting and activation, and presents a basis for phosphatase activating therapeutics.
DOI: 10.17632/6svb3fmngw
title: Matlab application for computer aided piezoelectric modelling

description: This application was created on the basis of synthesis algorithm using Cauer method modified to work with electromechanical systems. It is a continuation of the ongoing research with an aim to create a working synthesis method for variable piezoelectric active damping and actuating systems. The application includes a synthesis module that allows the modelling of arbitrary piezoelectric cascade systems constrained on one side. The application also allows the analysis of the synthesised model to verify its response. The analysis module was created based on the matrix method for the second order differential equations of motion. 
The repository contains the main application file with the .mlapp extension and all prerequsite modules marked with .mlx extensions. It is necessary to have a working version of Matlab (the application was made with R2019b version) to access each file and application source code.
DOI: 10.17632/9hntk3wbwc
title: Sandwich Analytics: Transactional, Socioeconomic, and Weather Data for 25 United States Based Quick Serve Sandwich Locations

description: Transactional data collected from a quick-serve sandwich chain over a 10-year period from 2003-2013 provides an opportunity to study transactional data on a wide variety of business locations. Secondary data includes hourly weather, crime, census data for each location, and enables modeling the effects of socioeconomic factors and weather conditions.
DOI: 10.17632/s2srkhr9vm
title: The Cyclicality of the Finance Premium Over the Business Cycle Economic Modelling

description: This paper examines the main determinants of the cyclicality of the finance premium in the cost channel framework, which has received less attention in the literature. We decompose the finance premium into a cost effect and a leverage effect. We show that in both the cost channel model and the credit channel model (Bernanke, Gertler and Gilchrist 1999), the cyclicality of the finance premium is determined mainly by the size and sign of the leverage effect. Some key factors that determine the leverage effect are, the nature of shocks, the degree of loan persistence in relation to output or net worth, and the stance of monetary policy. 

Here you will also find the manuscript of the paper, the codes and the Technical Appendix
DOI: 10.6084/m9.figshare.19778307.v1
title: Additional file 6 of Optimization of the antimicrobial peptide Bac7 by deep mutational scanning

description: Additional file 6. ∆AUC-values of all double combinations of the site-saturation library.
DOI: 10.17632/bdyh453p9x
title: Replication Package for "Export Market Penetration Dynamics" in Journal of International Economics

description: This repository contains the data and code required to replicate the results in the paper "Export Market Penetration Dynamics" in the Journal of International Economics. You can also find these data on Github at https://github.com/joesteinberg/dyn-mkt-pen/.
DOI: 10.17632/m8xyy3vsx3
title: Prediction Map

description: Revision of Impact of climate change on Southeast Asian natural habitats, with focus on protected areas (Maliwan Namkhan*, Niti Sukumal, Tommaso Savini 2022):
This is the prediction map (the first set of model output files ".TIF file") of Phasianidae species under current prediction and three future predictions.
DOI: 10.6084/m9.figshare.13273154.v1
title: Supplementary Material for: Accuracy and Safety of Customized Stereotactic Fixtures for Stereoelectroencephalography in Pediatric Patients

description: Stereoelectroencephalography (SEEG) in children with intractable epilepsy presents particular challenges. Their thin and partially ossified cranium, specifically in the temporal area, is prone to fracture while attaching stereotactic systems to the head or stabilizing the head in robot’s field of action. Postponing SEEG in this special population of patients can have serious consequences, reducing their chances of becoming seizure-free and impacting their social and cognitive development. This study demonstrates the safety and accuracy offered by a frameless personalized 3D printed stereotactic implantation system for SEEG investigations in children under 4 years of age. SEEG was carried out in a 3-year-old patient with drug-resistant focal epilepsy, based on a right temporal-perisylvian epileptogenic zone hypothesis. Fifteen intracerebral electrodes were placed using a StarFix patient-customized stereotactic fixture. The median lateral entry point localization error of the electrodes was 0.90 mm, median lateral target point localization error was 1.86 mm, median target depth error was 0.83 mm, and median target point localization error was 1.96 mm. There were no perioperative complications. SEEG data led to a tailored right temporal-insular-opercular resection, with resulting seizure freedom (Engel IA). In conclusion, patient-customized stereotactic fixtures are a safe and accurate option for SEEG exploration in young children.
DOI: 10.6084/m9.figshare.25429624.v2
title: Pulp pain assessment tool.xlsx

description: The aim of the study was to develop and validate a pain assessment tool specific to pulpal symptoms. It is the first dedicated multidimensional tool which encompasses the various attributes of pulp pain and clearly differentiated between the different stages of pulpitis by providing a cut-off score.
DOI: 10.6084/m9.figshare.25879888.v1
title: Normalized_QC_matrix

description: Seven individual datasets were analyzed, including the screening of biphasic cells, removal of doublets, and datasets for dimensionality reduction and clustering after correcting for cell cycle effects.
DOI: 10.17632/8dd5756cxm
title: Effect of iron addition to electrolyte on alkaline water electrolysis performance - data

description: This data set contains the raw untreated data, the treated data failes, and the python/MatLab scripts used to handle data treatment.
DOI: 10.6084/m9.figshare.12416540.v3
title: Dataset from Cooperative policing behaviour regulates reproductive division of labour in a termite

description: Raw data for the experiments.
DOI: 10.6084/m9.figshare.22359160.v1
title: Base de datos del proyecto

description: Base de datos del proyecto
DOI: 10.6084/m9.figshare.22652215.v1
title: Supplementary Material for: A 15-year-old boy with primary maxillary bone anaplastic lymphoma kinase-positive anaplastic large cell lymphoma relapsed with rib metastasis after spontaneous remission of a maxillary bone lesion: a case report and literature review

description: Anaplastic large cell lymphoma (ALCL) is a rare form of non-Hodgkin's lymphoma (NHL) in children, accounting for 10-15% of all NHL cases. ALCL is currently classified into categories of: 1) systemic anaplastic lymphoma kinase (ALK)-positive, 2) systemic ALK-negative, 3) primary cutaneous, and 4) breast implant-associated ALCL. In children, systemic ALK-positive ALCL is most common, and patients often present with extranodal involvement. We report a rare case of systemic ALK-positive ALCL with primary bone involvement in a 15-year-old male. Primary bone lymphoma is most commonly observed in diffuse large B-cell lymphoma, and is extremely rare in systemic ALCL. Therefore, the clinical features and prognosis of primary bone ALCL remain unclear. Our patient had spontaneous remission of primary maxillary bone ALCL after gingival scraping but relapsed one year later with rib metastasis. Spontaneous remission of ALCL has been reported more frequently in primary cutaneous ALCL and in a few cases in systemic ALCL, excluding primary bone ALCL. Our case demonstrates for the first time that systemic ALCL can also present as solitary bone involvement that can spontaneously remit. Because systemic ALCL is aggressive and has a risk of relapse, as in our case, it is important to consider ALCL in the differential diagnosis of primary bone lesions, and to make a precise pathological diagnosis.
DOI: 10.6084/m9.figshare.27643602.v1
title: Data for Effects of Environmental Changes on Marine Biogenic Sulfur Compounds in the Northwest Pacific and Eastern Indian Oceans

description: <b>This is detailed data for</b><b> </b><b>Effects of environmental changes on marine biogenic sulfur compounds in the Northwest Pacific and Eastern Indian Oceans</b>
DOI: 10.6084/m9.figshare.4264499.v1
title: Micromonas polaris CCMP2099 evolution experiments

description: We report the growth rate of a single strain of the Arctic prasinophyte Micromonas polaris CCMP2099 measured in the lab over long-duration experiments (170-340 generations).<br>There are five treatments (2°C, 6°C, 13°C, 13°C high light, 13°C periodic nitrate depletion) with 6 replicate lines per treatment. Growth rates are estimated at each culture transfer (semi-continuous cultures). <br>See Benner et al (2020) Limnology and Oceanography: Letters for more information.
DOI: 10.6084/m9.figshare.26352157.v1
title: ocs2024

description: Summary statistics for the Psychiatric Genomics Consortium
DOI: 10.6084/m9.figshare.21089869.v1
title: Genome assembly and annotation of Torreya grandis

description: Genome assembly and annotation of Torreya grandis
DOI: 10.6084/m9.figshare.22064786.v3
title: Appendix 2.pdf

description: Lameness
DOI: 10.17632/vp47g5hfc8
title: Open-access database of photovoltaics building integration parameters for different climate zones.

description: An open access database of BIPV results (70 parameters grouped in ten categories) for 127 cities categorized in four zones of cold (low GHI), moderate (medium GHI), warm (high GHI) and hot (very high GHI) solar irradiation conditions.
DOI: 10.25385/zuyd.6620381.v1
title: Mijn ervaring met de zorgrelatie (MEMZ)

description: Goede zorg begint met een goede omgang tussen cliënten en hulpverleners. Als een cliënt zich veilig voelt in de relatie, durft deze makkelijker aan te geven waar hij/zij zich zorgen over maakt. Voor mensen die communicatiekwetsbaar zijn, is het aangaan van belangrijke gesprekken niet vanzelfsprekend. Deze mensen ervaren immers moeilijkheden in het communiceren met hun omgeving. Bijvoorbeeld hebben zij moeite in het begrijpen en/of uiten van informatie door hun fysieke, cognitieve of emotionele beperkingen.<br><br>MEMZ is geschikt voor mensen die moeilijk kunnen spreken, begrijpen, lezen en/of schrijven en/of een kleine woordenschat hebben. MEMZ geeft deze mensen de mogelijkheid om hun ervaringen in de zorgrelatie met de hulpverlener weer te geven. Op basis van de uitkomsten, kan een hulpverlener/een zorginstelling de kwaliteit van zorg verhogen. <br><br>MEMZ bevat vragen over vier verschillende hoofdthema’s: Doen (gedrag): Wat doet de begeleider in de omgang met de cliënt? Onderdelen hiervan zijn: voldoende tijd nemen, met de cliënt praten i.p.v. over de cliënt, vragen hoe het met de cliënt gaat en vriendelijk tegen de cliënt zijn. Begrijpen (begrip): Hoe kan de begeleider zich inleven in de cliënt? Onderdelen hiervan zijn: zich begrepen voelen, jezelf kunnen zijn, eerlijkheid, kennis van de situatie van de cliënt. Samenwerken (collaboratie): Hoe werken de cliënt en de begeleider samen? Onderdelen hiervan zijn: meebeslissen, vertrouwen, samenwerking tussen begeleiders. Een gesprek hebben (communicatie): Hoe praat de begeleider met de cliënt? Onderdelen hiervan zijn: luisteren, begrijpen wat de begeleider zegt.<br> Het instrument kent drie verschillende toepassingen: Digitale versie: MEMZ-App: voor gebruik door een cliënt, onafhankelijk van een begeleider (te gebruiken via de website: https://mijnervaringmetdezorgrelatie.nl) Analoge versie: MEMZ-Bord: voor gebruik door een cliënt, samen met een begeleider (digitaal mogelijkheid voor documentatie)Groepsversie: MEMZ-Groepsspel: voor gebruik met een groep van cliënten, samen met 1 – 2 begeleiders.<br>Zuyd Hogeschool, lectoraat Autonomie en participatie in samenwerking met: Huis voor de Zorg / Burgerkracht LimburgStichting Gehandicaptenzorg LimburgKoraal GroepViralis Woonzorg groepErgotherapiepraktijk Zuid LimburgAlzheimer Nederland Parkstad LimburgLunet ZorgFontysUniversiteit MaastrichtNivelStichting PLSVector 4 Software SolutionsEIZT
DOI: 10.17632/hnfjs42d5g
title: Symptom-Labeled Image Dataset of Rice Plants for Stem Borer Infestation Classification

description: Description:
The Rice Stem Borer Infestation Dataset is an extensive image dataset of paddy plants with symptoms for the purposes of research in precision agriculture and AI based plant health monitoring. It emphasizes on three classes based on the symptoms: Healthy, Dead Heart, and White Head, corresponding to normal growth and two key damage stages caused by the Yellow Stem Borer (Scirpophaga incertulas) and Striped Stem Borer (Chilo suppressalis).

The dataset consists of 2,096 high-resolution RGB images originally taken in the field, under natural lighting, across different crop fields in Bangladesh, and captured with a 64MP Realme 6 smartphone. Photos were captured under different weather, lighting, and time conditions to mimic actual environments. 

A certified agricultural expert confirmed the accuracy of symptom classification for each image. In order to enhance the variability and robustness of the dataset for machine learning purposes, a total of 14,672 augmented images were generated through transformations that include rotation, flipping, zoom, addition of noise, brightness, shearing, and height shifting, providing a total of images of 16,768.

Dataset Details:
1. Original Dataset: 
Number of Images: 2,096 high-resolution RGB images ( .jpg format )
Classes:
 • Healthy: 1106 images
 • Dead Heart :439 images
 • White Head: 551 images 
2. Augmented Dataset: 
 Number of Augmented Images: 14,672 high-resolution RGB images ( .jpg format )
 Classes:
 • Healthy: 7742 images
 • Dead Heart: 3073 images
 • White Head: 3857 images

Use a data augmentation library or tool (e.g. TensorFlow ImageDataGenerator, OpenCV) to apply transformations.
 Define the Parameters Used for Data Augmentation:
 Horizontal Flip: Image flipped left-to-right.
 Rotation: Rotated by 45 degrees.
 Zoom: Random zoom between 0.8x and 1.2x.
 Add Gaussian Noise: Random noise with mean=0, std=25.
 Height Shift: Shift image vertically by 20% of height.
 Brightness Adjustment: Random brightness between 0.5x and 1.5x.
 Shearing: Shear (distort) the image with shear factor up to 0.5.

Capture Details:
 • Device: Realme 6 (64MP camera)
 • Resolution: 475×635 pixels
 • Collection Period: January–March 2025
 • Environmental Diversity: Varied weather (sunny, cloudy, windy), times (morning, noon, afternoon)

Data Collection Location: 
 • Satrujitpur, Magura Sadar, Khulna, Bangladesh (Latitude: 23°25'07.0"N, Longitude: 89°29'20.0"E)
 • Khajura, Bagherpara Upazila, Jessore, Khulana, Bangladesh (Latitude: 23.2764° N, Longitude: 89.2538° E) 

Purpose:
The purpose of this dataset is to help automated, rapid identification of the level of infestation from images of rice stem borers through computer vision and artificial intelligence. It helps improve pest detection systems, reduces crop loss to pests by lessening reliance on pesticide use, and provides and encourages development of strong agricultural monitoring tools.
DOI: 10.17632/w3jhv8b8bt
title: Investigación de TFM: Competencia Digital Docente del profesorado universitario

description: El propósito de utilizar Mendeley es realizar una recopilación exhaustiva de información sobre la competencia digital docente para mi Trabajo de Fin de Máster y realizar una criba para seleccionar los contenidos más destacados y relevantes en el tema. Permitiendo organizar de manera eficiente la gran cantidad de información disponible, como artículos, informes, libros y recursos digitales relacionados con la competencia digital.

En resumen, mi objetivo al utilizar Mendeley es realizar una recopilación y criba de la abundante información sobre la competencia digital docente, manteniendo los contenidos más destacados y accesibles para todos aquellos interesados en el tema. 

Pd: En la carpeta Pdfs se encuentran todos los documentos Pdf de la investigación para su descarga y consulta, para hacerlo más accesible, en el documento ZIp: COLECCIÓN DE PDF, se pueden descargar todos los Pdfs a la vez, o puedes consultar uno en uno en la carpeta: Pdfs_TFM. Y a continuación en los tres documentos REFERENCIAS, son el mismo archivo con diversos formatos para facilitar su acceso y diversificación para que cualquier gestor bibliográfico pueda leerlo.
Gracias por dedicar su preciado tiempo a pasarse por esta investigación, espero que le pueda servir de mucha ayuda, como a mí.