cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8051425
title: DCMEX ground based radar data

description: Here are data collected by ground based radars during Deep Convective Microphysics Experiment (DCMEX) in 2022.

SR1 denotes OU Shared Mobile Atmospheric Research and Teaching Radar (SR1).

For SR1 data, DT is the cleaned-up reflectivity and VT is the edited velocity.

Each tar ball contains data for the indicated day. The data are in NetCDF CFRadial format. The CFRadial conventions are documented at  CfRadialDoc-v2.1-20190901.pdf. The format is known to The Python ARM Radar Toolkit among other tools.

Extracting a SR1 tar ball with "tar Jxf ...xz" produces paths in the current working directory with the following hierarchy:

DCMEX/YYYYMMDD/SR1/SR1.YYYYMMDD_HHMMSS.SSS_to_YYYYMMDD_HHMMSS.SSS_PPI/cfrad.YYYYMMDD_HHMMSS.SSS_to_YYYYMMDD_HHMMSS.SSS_SR1_vNN_sNN_elX.XX_PPI.nc

Directory names:

DCMEX is the file campaign,YYYYMMDD is the date of data collection,SR1 is the instrument nameSR1.YYYYMMDD_HHMMSS.SSS_to_YYYYMMDD_HHMMSS.SSS_(PPI|RHI) specifies a volume by time range and scan mode.

SR1 file names have form:cfrad.YYYYMMDD_HHMMSS.SSS_to_YYYYMMDD_HHMMSS.SSS_SR1_vNN_sNN_(el|az)X.XX_(PPI|RHI).nc

where vNN is index of the volume that contains the sweep. sNN is sweep index. el or az is sweep angle. PPI or RHI is scan mode.

PX-1000 denotes OU ARRC Polarimetric X-band 1000 (https://arrc.ou.edu/radar_px1000.html). Files are in the NetCDF format the instrument records in. There is a separate NetCDF file for each sweep and data type. Use ncdump or 'ncdump -h' to browse organization and contents. The PX-1000 files contain the original measurements. They have not been cleaned up or edited.

Extracting a PX-1000 tar ball with "tar Jxf ...xz" produces paths in the current working directory with the following hierarchy:

DCMEX/YYYYMMDD/PX-1000/PX-YYYYMMDD-HHMMSS/PX-YYYYMMDD-HHMMSS-EX.X/PX-YYYYMMDD-HHMMSS-(E|A)X.X-(Z|V|P|R|D|W).nc

Directory names:

DCMEX is the field campaign,YYYYMMDD is the date of data collection,PX-1000 is the instrument name,PX-YYYYMMDD-HHMMSS specifies the volume by time range,PX-YYYYMMDD-HHMMSS-EX.X specifies the sweep directory by time range and scan mode.

PX-1000 file names have form:PX-YYYYMMDD-HHMMSS-(E|A)X.X-(Z|V|P|R|D|W|).nc

where E or A denotes elevation or azimuth.

PX-1000 makes a separate file for each moment of each sweep. The last letter before .nc indicates which moment. The moments are: Z = reflectivity (a.k.a. intensity), V = radial velocity, P = PhiDP, R = RhoHV, D = differential reflectivity, W = velocity spectrum width.

The pdf and doc files are operator logs made during the observations
DOI: 10.6073/pasta/782f00ed86a8027d081af4ad7d8f45c4
title: Physical and microbial processing of dissolved organic nitrogen (DON) (Photodegradation Experiment) along an oligotrophic marsh/mangrove/estuary ecotone (Taylor Slough and Florida Bay) for August 2003 in Everglades National Park (FCE), South Florida, USA

description: A better understanding of the biogeochemical cycling of nutrients entering Florida Bay is a key issue regarding the restoration of the Everglades. In addition to precipitation, the other major source of freshwater to Florida Bay is from Taylor Slough and the C-111 Basin in the northeast section of the Bay. While it is known that these areas deliver significant amounts of N to the Bay, a significant portion of this is in the form of dissolved organic N (DON). The sources, environmental fate and bioavailability to microorganisms of this DON are however, not known. Should this DON be readily available, any increased load as a function of restoration changes might have an impact on internal phytoplankton bloom dynamics. No significant flocculation or precipitation of DOM occurred with increase in salinity, meaning that terrestrial DOM does not get trapped in the sediments but stays in the water column where it subjected to photolysis and advective transport. Sunlight has a significant effect on the chemical characteristics of DOM. While the DOC levels did not change significantly during photo-exposure, the optical characteristics of the DOM were modified. The environmental implications of this are conflicting: photo-induced polymerization may stabilize the DOM by reducing its bioavailability while photolysis may make the DOM more labile. Overall, DON bioavailability was relatively low in this region. Even though the amount of DON loaded to the bay may be significant, the fraction of DON available for microbial cycling is much smaller. The amount of N supplied by recycling may be a significant portion of the total DIN pool. All this must be considered in context with the proposed CERP modifications to flows. As of the latest initial Comprehensive Everglades Restoration Project (CERP) update, the flows to Taylor Slough and C-111/Panhandle Basis are not predicted to change very much from base conditions. Therefore we do not expect any great increases in TN loading in this region. In contrast, the proposed flow increases to the Shark River Slough are large and may have significant effects on transport of DOM to the Southwest Florida Shelf. We believe that future efforts in DON characterization and bioavailability should be concentrated in this area.
DOI: 10.5281/zenodo.10655328
title: Dataset of paper "Fingerprinting the Shadows: Unmasking Malicious Servers with Machine Learning-Powered TLS Analysis" (WWW '24)

description: This dataset was collected during the period 01/2023 - 05/2023. The outcomes of this research project are presented in the paper entitled "Fingerprinting the Shadows: Unmasking Malicious Servers with Machine Learning-Powered TLS Analysis", which was accepted for publication in the proceedings of the ACM Web Conference 2024 (WWW '24, conference website).
DOI: 10.5281/zenodo.10655329
title: Dataset of paper "Fingerprinting the Shadows: Unmasking Malicious Servers with Machine Learning-Powered TLS Analysis" (WWW '24)

description: This dataset was collected during the period 01/2023 - 05/2023. The outcomes of this research project are presented in the paper entitled "Fingerprinting the Shadows: Unmasking Malicious Servers with Machine Learning-Powered TLS Analysis", which was accepted for publication in the proceedings of the ACM Web Conference 2024 (WWW '24, conference website).
DOI: 10.7931/eydz-8665
title: Template for mapping wetlands under the NPS Freshwater Management 2020
DOI: 10.6073/pasta/55116ee288ca048668d52adfc1a1ea59
title: Lake Tahoe Historic Secchi depth

description: Historic Secchi depth (Water clarity) measurement of Lake Tahoe, CA/NV. There are two sampling stations Index (LTP, 39.0972 -120.155) and Mid-lake (MLTP, 39.1417 -120.0153
 ). Observation at Index station started on 1967-07-28, and averaged sampling interval is around 14 days. Mid-lake station sampling has been started on 1980-04-29, and taken at approximately 33 days interval.
 
 See methods for details.
DOI: 10.6073/pasta/e87edd869b703ca5e58d879c7b6b490b
title: Litterfall in tabonuco (subtropical wet) forest in the Luquillo Experimental Forest, Puerto Rico (MRCE Litterfall data)

description: Treatments common to both sites are quarterly fertilization (macro- and micronutrients) and unmanipulated. At El Verde, a third set of plots was subject to a one time removal of litter and woody debris generated by Hurricane Hugo (September 1989).
 
 Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.6084/m9.figshare.20419398.v2
title: Kelp to whales data & code

description: Dataset analyzed and code in: Hildebrand L., S. Derville, I. Hildebrand, and L.G. Torres. Kelp to whales: Exploring the effect of a classic trophic cascade on a marine predator. In Review.
DOI: 10.5281/zenodo.5253496
title: ReBack BenchMark

description: ReBack BenchMark
DOI: 10.5281/zenodo.5395503
title: ReBack BenchMark

description: ReBack BenchMark
DOI: 10.5281/zenodo.5805410
title: ReBack BenchMark

description: ReBack BenchMark
DOI: 10.5281/zenodo.5260007
title: ReBack BenchMark

description: ReBack BenchMark
DOI: 10.5281/zenodo.5260023
title: ReBack BenchMark

description: ReBack BenchMark
DOI: 10.5281/zenodo.5805419
title: ReBack BenchMark

description: ReBack BenchMark
DOI: 10.5281/zenodo.6715562
title: ReBack BenchMark

description: ReBack BenchMark
DOI: 10.5281/zenodo.7987976
title: ReBack BenchMark

description: ReBack BenchMark
DOI: 10.5281/zenodo.5196362
title: ReBack BenchMark

description: ReBack BenchMark
DOI: 10.5281/zenodo.5196363
title: ReBack BenchMark

description: ReBack BenchMark
DOI: 10.22003/xfel.eu-data-005641-00
title: Viral and Cancer targets investigated by serial fs crystallography with viscous injection at the EuXFEL
DOI: 10.22003/xfel.eu-data-900382-00
title: SQS commissioning
DOI: 10.22003/xfel.eu-data-005690-00
title: Characterizing solid density plasmas relevant to white dwarf envelopes
DOI: 10.22003/xfel.eu-data-005761-00
title: In-situ Study of Ligand Binding Mechanisms of the Adenosine A2A Receptor with LCP Mixing System – A Newly Validated Drug Target for Immuno-oncology
DOI: 10.5281/zenodo.10681284
title: Pairwise Alignment Improves Graph Domain Adaptation

description: These are the files to obtain the processed MAG datasets in the paper: Pairwise Alignment Improves Graph Domain Adaptation (Pair-Align). Our code can be found here: https://github.com/Graph-COM/Pair-Align.
DOI: 10.5281/zenodo.10681285
title: Pairwise Alignment Improves Graph Domain Adaptation

description: These are the files to obtain the processed MAG datasets in the paper: Pairwise Alignment Improves Graph Domain Adaptation (Pair-Align). Our code can be found here: https://github.com/Graph-COM/Pair-Align.
DOI: 10.5281/zenodo.10681149
title: Percepciones del profesorado sobre el papel de los sistemas aumentativos y alternativos de comunicación.

description: This database corresponds to the results of the paper "Percepciones del profesorado sobre el papel de los sistemas aumentativos y alternativos de comunicación" which has been accepted for publication on 17th November 2023 in the journal Educaçao e Pesquisa (ISSN:1678-4634).
DOI: 10.5281/zenodo.10681150
title: Percepciones del profesorado sobre el papel de los sistemas aumentativos y alternativos de comunicación.

description: This database corresponds to the results of the paper "Percepciones del profesorado sobre el papel de los sistemas aumentativos y alternativos de comunicación" which has been accepted for publication on 17th November 2023 in the journal Educaçao e Pesquisa (ISSN:1678-4634).
DOI: 10.5281/zenodo.10680006
title: Conformational Space of the Translocation Domain of Botulinum Toxin: Atomistic Modeling and Mesoscopic Description of the Coiled-Coil Helix Bundle

description: The toxicity of botulinum multi-domain neurotoxins (BoNTs) arises from a sequence of molecular events, in which the translocation of the catalytic domain through the membrane of a neurotransmitter vesicle plays a key role. A structural study (Lam et al., Nat. Comm., 2018) of the translocation domain of BoNTs suggests that the interaction with the membrane is driven by the transition of an α helical switch towards a β hairpin. Atomistic simulations in conjunction with the mesoscopic Twister model are used to investigate the consequences of this proposition for the toxin–membrane interaction. The conformational mobilities of the domain, as well as the effect of the membrane, implicitly examined by comparing water and water–ethanol solvents, lead to the conclusion that the transition of the switch modifies the internal dynamics and the effect of membrane hydrophobicity on the whole protein. The central two α helices, helix 1 and helix 2, forming two coiled-coil motifs, are analyzed using the Twister model, in which the initial deformation of the membrane by the protein is caused by the presence of local torques arising from asymmetric positions of hydrophobic residues. Different torque distributions are observed depending on the switch conformations and permit an origin for the mechanism opening the membrane to be proposed.
DOI: 10.5281/zenodo.10680007
title: Conformational Space of the Translocation Domain of Botulinum Toxin: Atomistic Modeling and Mesoscopic Description of the Coiled-Coil Helix Bundle

description: The toxicity of botulinum multi-domain neurotoxins (BoNTs) arises from a sequence of molecular events, in which the translocation of the catalytic domain through the membrane of a neurotransmitter vesicle plays a key role. A structural study (Lam et al., Nat. Comm., 2018) of the translocation domain of BoNTs suggests that the interaction with the membrane is driven by the transition of an α helical switch towards a β hairpin. Atomistic simulations in conjunction with the mesoscopic Twister model are used to investigate the consequences of this proposition for the toxin–membrane interaction. The conformational mobilities of the domain, as well as the effect of the membrane, implicitly examined by comparing water and water–ethanol solvents, lead to the conclusion that the transition of the switch modifies the internal dynamics and the effect of membrane hydrophobicity on the whole protein. The central two α helices, helix 1 and helix 2, forming two coiled-coil motifs, are analyzed using the Twister model, in which the initial deformation of the membrane by the protein is caused by the presence of local torques arising from asymmetric positions of hydrophobic residues. Different torque distributions are observed depending on the switch conformations and permit an origin for the mechanism opening the membrane to be proposed.
DOI: 10.6084/m9.figshare.24843873
title: "Human Perception of Flicker-Fused Letters that are Luminance Balanced" session logs

description: Experiment session logs for data collected as described and discussed in "Human Perception of Flicker-Fused Letters that are Luminance Balanced", Greene & Morrison, European Journal of Neuroscience, 2024.
DOI: 10.6084/m9.figshare.24843873.v3
title: "Human Perception of Flicker-Fused Letters that are Luminance Balanced" session logs

description: Experiment session logs for data collected as described and discussed in "Human Perception of Flicker-Fused Letters that are Luminance Balanced", Greene & Morrison, European Journal of Neuroscience, 2024.
DOI: 10.6084/m9.figshare.3761562.v2858
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.48704/ird_mgzn2
title: MgZn2
DOI: 10.6084/m9.figshare.25246375
title: Protocol Document

description: The IRB-approved protocol that was used to collect the data.
DOI: 10.6084/m9.figshare.25246375.v1
title: Protocol Document

description: The IRB-approved protocol that was used to collect the data.
DOI: 10.6084/m9.figshare.25246351
title: Ausgabe-Daten Experimente, GPT-3.5

description: This data contains all the executed experiments with the GPT-3.5 model. Each experiment additionally contains all relevant data such as the prompt, the used components, etc. for best possible reproducibility.
DOI: 10.6084/m9.figshare.25246351.v2
title: Ausgabe-Daten Experimente, GPT-3.5

description: This data contains all the executed experiments with the GPT-3.5 model. Each experiment additionally contains all relevant data such as the prompt, the used components, etc. for best possible reproducibility.
DOI: 10.6084/m9.figshare.25246351.v1
title: Ausgabe-Daten Experimente, GPT-3.5

description: This data contains all the executed experiments with the GPT-3.5 model. Each experiment additionally contains all relevant data such as the prompt, the used components, etc. for best possible reproducibility.
DOI: 10.34740/kaggle/dsv/7659191
title: Public Opinion Russia Ukraine War (Updated Daily)
DOI: 10.34740/kaggle/dsv/7659215
title: crypto-data-daily-updates
DOI: 10.25919/0k5p-dm04
title: Parkes observations for project P1050 semester 2023OCTS_09

description: This is a request for the observation time for the timing campaign of new pulsars discovered in the reprocessing of the low-latitude Galactic plane section of the HTRU-S survey (HTRU-S LowLat) and the Parkes Multibeam Pulsar Survey (PMPS). We have completed 90 % of the HTRU-S LowLat survey and completed zero acceleration PMPS search with GPU-based coherent acceleration search, template bank, and fast folding algorithm pipelines and now have discovered 112 previously unknown pulsars among which 18 were found in the PMPS. Interesting science can usually only be derived from a new pulsar after confirmation, and a follow-up timing campaign is carried out. At least 1-2 year of initial timing is the minimum timespan required to fully characterise any newly-discovered pulsars, essential for deriving pulsar parameters such as the characteristic age, magnetic field strength, and spin-down rate, as well as for detecting any unexpected behaviour of the pulsar which might result from emission instabilities. This project is necessary for the timing of several interesting pulsars, including binary pulsars, high DM pulsars, scattered profile pulsars, and bright ones that show emissions in larger bandwidths in the UWL band. Apart from this, finding the nature of a unique binary pulsar system via a dedicated observing campaign is also another goal. The follow-up timing in semester 2023OCTS will assist in completing many exciting large-term science goals.
DOI: 10.26093/cds/vizier.36590095
title: Survey of Surveys. I. Radial velocities

description: VizieR online Data Catalogue associated with article published in journal Astronomy and Astrophysics with title 'Survey of Surveys. I. The largest catalogue of radial velocities for the Galaxy.' (bibcode: 2022A&A...659A..95T)
DOI: 10.25919/7r21-nj09
title: Parkes observations for project P1207 semester 2023OCTS_04

description: Whether there is a large population of pulsars in the Bulge, millisecond pulsars in particular, is a long-standing problem. We recently carried out a survey of a small region toward the Bulge with the Five-hundred-meter Aperture Spherical Telescope (FAST) and discovered more than 10 pulsar candidates. Four bright pulsar candidates are estimated to have distances larger than 3kpc and are therefore likely located in the Bulge region. Considering the small number of pulsars we know in the Bulge, the determination of spin and astrometric parameters of these pulsars can be important for us to understand the pulsar population in the Bulge. These information can then be used to investigate the origin of Gamma-ray emission and the electron density distribution in the region. Here we propose to carry out confirmation observation of nine pulsar candidates and time those four bright ones (detected with S/N&gt;20, and with distance larger than 3kpc) with Parkes.
DOI: 10.6073/pasta/4f0ac68c77c19035b95209158c24e3f8
title: Characterization of dissloved organic nitrogen in an oligotrophic subtropical coastal ecosystem (Taylor Slough and Shark River Slough) for December 2001 in Everglades National Park (FCE), South Florida, USA

description: A better understanding of the biogeochemical cycling of nutrients entering Florida Bay is a key issue regarding the restoration of the Everglades. In addition to precipitation, the other major source of freshwater to Florida Bay is from Taylor Slough and the C-111 Basin in the northeast section of the Bay. While it is known that these areas deliver significant amounts of N to the Bay, a significant portion of this is in the form of dissolved organic N (DON). The sources, environmental fate and bioavailability to microorganisms of this DON are however, not known. Should this DON be readily available, any increased load as a function of restoration changes might have an impact on internal phytoplankton bloom dynamics. No significant flocculation or precipitation of DOM occurred with increase in salinity, meaning that terrestrial DOM does not get trapped in the sediments but stays in the water column where it subjected to photolysis and advective transport. Sunlight has a significant effect on the chemical characteristics of DOM. While the DOC levels did not change significantly during photo-exposure, the optical characteristics of the DOM were modified. The environmental implications of this are conflicting: photo-induced polymerization may stabilize the DOM by reducing its bioavailability while photolysis may make the DOM more labile. Overall, DON bioavailability was relatively low in this region. Even though the amount of DON loaded to the bay may be significant, the fraction of DON available for microbial cycling is much smaller. The amount of N supplied by recycling may be a significant portion of the total DIN pool. All this must be considered in context with the proposed CERP modifications to flows. As of the latest initial Comprehensive Everglades Restoration Project (CERP) update, the flows to Taylor Slough and C-111/Panhandle Basis are not predicted to change very much from base conditions. Therefore we do not expect any great increases in TN loading in this region. In contrast, the proposed flow increases to the Shark River Slough are large and may have significant effects on transport of DOM to the Southwest Florida Shelf. We believe that future efforts in DON characterization and bioavailability should be concentrated in this area.
DOI: 10.5281/zenodo.8321734
title: Molecules used to train or generated by chemical language models

description: This upload contains training datasets or generated molecules from the paper “Invalid SMILES are helpful, not harmful, for chemical language models.”


The contents of the directories are as follows:



	
training_sets: sets of molecules from ChEMBL or GDB-13 used to train chemical language models, represented either as SMILES or SELFIES
	
sampled-*: unprocessed samples of 10 million molecules from each model trained on ChEMBL or GDB-13
	
prior_inputs: sets of molecules from LOTUS, COCONUT, FooDB and NORMAN, split into ten folds and used to train chemical language models
	
priors-*: samples of 100 million molecules from chemical language models trained on each cross-validation fold, with unique molecules represented as canonical SMILES and sorted in descending order by their sampling frequency
DOI: 10.5281/zenodo.8321735
title: Molecules used to train or generated by chemical language models

description: This upload contains training datasets or generated molecules from the paper “Invalid SMILES are helpful, not harmful, for chemical language models.”


The contents of the directories are as follows:



	
training_sets: sets of molecules from ChEMBL or GDB-13 used to train chemical language models, represented either as SMILES or SELFIES
	
sampled-*: unprocessed samples of 10 million molecules from each model trained on ChEMBL or GDB-13
	
prior_inputs: sets of molecules from LOTUS, COCONUT, FooDB and NORMAN, split into ten folds and used to train chemical language models
	
priors-*: samples of 100 million molecules from chemical language models trained on each cross-validation fold, with unique molecules represented as canonical SMILES and sorted in descending order by their sampling frequency