cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7792287
title: Molecular dynamics-generated ensemble dataset of ubiquitin; for "PROTHON: A Local Order Parameter-Based Method for Efficient Comparison of Protein Ensembles"

description: The molecular dynamics-generated ensemble dataset (229Mb zip file) for ubiquitin, used in the manuscript "PROTHON: A Local Order Parameter-Based Method for Efficient Comparison of Protein Ensembles", submitted to the Journal of Chemical Information and Modeling (JCIM). The dataset consists of 6 .dcd files, and one .pdb file.
DOI: 10.5281/zenodo.7793441
title: Code Appendix: Do Seed Dispersal Strategies Reflect Adaptation to Environmental Variability? Functional Ecology, 2023

description: This code appendix contains all of the R code and data for the manuscript:<br> <br> Van Den Elzen, C. L., N. Sigman, and N. C. Emery. 2023. Do Seed Dispersal Strategies Reflect Adaptation to Environmental Variability?. Functional Ecology (Manuscript ID: FE-2022-00850).<br> <br> Abstract: 1. Dispersal is one of the primary mechanisms by which organisms adapt to spatial and temporal variation in the environment. Theory predicts that increasing spatiotemporal variation drives selection for offspring dispersal away from their natal habitat and one another. However, due to inherent difficulties in measuring dispersal in plant systems, there are few empirical tests of the extent to which this hypothesis can explain variation in seed dispersal strategies. 2. In this study, we characterized and compared the dispersal patterns of three closely related plant species that segregate across gradients in spatiotemporal variation in seasonal wetlands. 3. We tracked individual seeds as they dispersed in their natural habitats to measure seed dispersal distance (the distance traveled from the maternal plant) and inter-seed spread (distances between dispersed seeds), and to identify the plant traits causing within-species variation in seed dispersal. We also evaluated the seed traits causing within-species variation in seed flight distance and terminal velocity in a wind tunnel and a drop tube, respectively. 4. We found that average seed dispersal distance was lowest in the species that occupies the most spatiotemporally variable habitat, contradicting our predictions; however, inter-seed spread was lowest in the species from the least variable habitat, which aligned with our expectations. 5. The maternal plant and seed traits explaining intraspecific variation in seed dispersal varied among species as well as the method used to measure dispersal potential. Two traits had non-intuitive effects on dispersal, including pappus size, which reduced seed flight distance in two of the focal taxa. 6. Overall, our results indicate that the differences we detected in seed dispersal among three closely related plant taxa can be only partially explained by current patterns of environmental variability in their respective habitats, and that the traits driving within species variation in seed dispersal can evolve rapidly and change with the environmental context in which they are measured.
DOI: 10.34740/kaggle/dsv/5298319
title: History Channel's Alone Seasons 1-3 and 5-9
DOI: 10.6084/m9.figshare.22492894
title: Data base OEM4C project 2023.xlsx

description: Base de datos de instituciones de educación superior para sustentar un modelo de desarrollo del razonamiento para la complejidad.
DOI: 10.6084/m9.figshare.22492894.v1
title: Data base OEM4C project 2023.xlsx

description: Base de datos de instituciones de educación superior para sustentar un modelo de desarrollo del razonamiento para la complejidad.
DOI: 10.3886/e115467v1-135480
title: Data and Code for: Imperfect Markets versus Imperfect Regulation in U.S. Electricity Generation

description: This deposit contains the code to replicate of "Imperfect Markets versus Imperfect Regulation in U.S. Electricity Generation."<br>
description: Hourly power plant and grid operations in the United States.
DOI: 10.3886/e115467v1-135481
title: Data and Code for: Imperfect Markets versus Imperfect Regulation in U.S. Electricity Generation

description: This deposit contains the code to replicate of "Imperfect Markets versus Imperfect Regulation in U.S. Electricity Generation."<br>
description: Hourly power plant and grid operations in the United States.
DOI: 10.6084/m9.figshare.21916220
title: Unique Populations of Sulfur-Oxidizing Bacteria in Natural Cold Sulfur Springs in Slovakia

description: Currently, there are over 200 officially registered sulfur springs in Slovakia, most of which are cold hydrogen sulfide springs with a characteristic strong odor of rotten eggs. Their typical inhabitants are filamentous sulfur-oxidizing bacteria. The aim of this study was to identify the major bacterial populations inhabiting sulfur springs in Slovakia using a combination of non-cultivation and cultivation approaches. Non-cultivation analyses revealed high variability of sulfur-oxidizing bacteria in Slovak springs. Sulfur mats were usually dominated by chemolithotrophic sulfur-oxidizers from the phylum <i>Proteobacteria</i> (more than 87%), followed by photoautotrophic sulfur-oxidizers of the phylum <i>Chlorobi.</i> The group of nonsulfur-oxidizers was composed of typical freshwater species and bacteria with genetic potential for sulfur oxidation. The low similarity in the 16S rRNA gene sequence of the sequenced DGGE bands indicates that about half of the sulfur-oxidizing bacteria identified represent new species/genera of sulfur-oxidizing bacteria. In attempts to cultivate potential new species of sulfur-oxidizing bacteria, a very low overlap was observed between non-cultivation and cultivation analyses, and a new species of the <i>Thiofaba</i> genus was cultivated. Our results expand knowledge on the diversity of sulfur bacteria in cold sulfur springs in Slovakia and indicate that the diversity of sulfur-oxidizing bacteria is significantly underestimated and that sulfur springs could be inhabited by unique bacterial populations.
DOI: 10.6084/m9.figshare.21916220.v1
title: Unique Populations of Sulfur-Oxidizing Bacteria in Natural Cold Sulfur Springs in Slovakia

description: Currently, there are over 200 officially registered sulfur springs in Slovakia, most of which are cold hydrogen sulfide springs with a characteristic strong odor of rotten eggs. Their typical inhabitants are filamentous sulfur-oxidizing bacteria. The aim of this study was to identify the major bacterial populations inhabiting sulfur springs in Slovakia using a combination of non-cultivation and cultivation approaches. Non-cultivation analyses revealed high variability of sulfur-oxidizing bacteria in Slovak springs. Sulfur mats were usually dominated by chemolithotrophic sulfur-oxidizers from the phylum <i>Proteobacteria</i> (more than 87%), followed by photoautotrophic sulfur-oxidizers of the phylum <i>Chlorobi.</i> The group of nonsulfur-oxidizers was composed of typical freshwater species and bacteria with genetic potential for sulfur oxidation. The low similarity in the 16S rRNA gene sequence of the sequenced DGGE bands indicates that about half of the sulfur-oxidizing bacteria identified represent new species/genera of sulfur-oxidizing bacteria. In attempts to cultivate potential new species of sulfur-oxidizing bacteria, a very low overlap was observed between non-cultivation and cultivation analyses, and a new species of the <i>Thiofaba</i> genus was cultivated. Our results expand knowledge on the diversity of sulfur bacteria in cold sulfur springs in Slovakia and indicate that the diversity of sulfur-oxidizing bacteria is significantly underestimated and that sulfur springs could be inhabited by unique bacterial populations.
DOI: 10.5281/zenodo.7787639
title: Datasets used for the publication: UAV-Lidar reveals that canopy structure mediates the influence of edge effects on forest diversity, function and microclimate

description: Datasets used for the publication: UAV-Lidar reveals that canopy structure mediates the influence of edge effects on forest diversity, function and microclimate. The file "Blanchard_et_al_JoE_2023_data_plot_trees.csv" contains individual tree indentification data for the 46 plots used in the study. The file "Blanchard_et_al_JoE_2023_data_plot_aggregated.csv" contains plot-level aggregated metrics used for the analyses: - distance to the forest edge - diversity indices : the 20-sp rarefied species richness "rar_sp_richness_20" and the 20-sp rarefied Beta diversity "Beta_div" which corresponds to the plos coordinates on the PCoA first axis. - functional indices: the community weighted mean trait values for the four traits used in this study : ,"WD","SLA","LA","LDMC"; the fonctional divergence index "FD_trans.FDiv"; and the synthetic community weigthed mean trait wich corresponds to the postion on plots on the principal component analysis of species trait values "Functional_composition_trans". Note that the SLA and LA values were log-transformed before computing "FD_trans.FDiv" and "Functional_composition_trans". - UAV-LiDAR-dervived metrics: canopy height, gap fraction ("gap_fraction2"), slope, curvature - The estimated plot above graound biomass "agb_plot", and the mean value of the vapor pressure deficit during the drisest month "max_monthly_VPD". - coordinates of the plots in UTM 58S (Coordinate reference system) Please read the material and method section of the article for more informations on this dataset.
DOI: 10.6084/m9.figshare.22492936.v1
title: Appendices_for_Ellis_Hill_Little_2023_CrawfordKnob

description: These appendices refer to the research paper "Structure and topology of a brittle-ductile fault swarm at Crawford Knob, Franz Josef, New Zealand" by Ellis, Hill and Little (New Zealand Journal og Geology and Geophysics, 2023)
DOI: 10.6084/m9.figshare.22492936
title: Appendices_for_Ellis_Hill_Little_2023_CrawfordKnob

description: These appendices refer to the research paper "Structure and topology of a brittle-ductile fault swarm at Crawford Knob, Franz Josef, New Zealand" by Ellis, Hill and Little (New Zealand Journal og Geology and Geophysics, 2023)
DOI: 10.5281/zenodo.7790340
title: Electron addition spectral functions of low-density polaron liquids

description: This folder contains the DMRG data/scripts to reproduce our spectral function figures in our paper at https://arxiv.org/abs/2303.05013 Instructions can be found in the Supplemental Material of the paper (included, supplemental.pdf) Raw DMRG data files can be made available upon request. For any question, send an email to alberto.nocera@ubc.ca
DOI: 10.5281/zenodo.7790339
title: Electron addition spectral functions of low-density polaron liquids

description: This folder contains the DMRG data/scripts to reproduce our spectral function figures in our paper at https://arxiv.org/abs/2303.05013 Instructions can be found in the Supplemental Material of the paper (included, supplemental.pdf) Raw DMRG data files can be made available upon request. For any question, send an email to alberto.nocera@ubc.ca
DOI: 10.6084/m9.figshare.22492961
title: Function use count by month from Expansion and evolution of the R programming language

description: Month (row) by column (function) counts in full dataset.
DOI: 10.6084/m9.figshare.22492961.v1
title: Function use count by month from Expansion and evolution of the R programming language

description: Month (row) by column (function) counts in full dataset.
DOI: 10.6084/m9.figshare.22492964.v1
title: Function summary table from Expansion and evolution of the R programming language

description: R functions, associated packages and package categories, overall use count and values from Fig 2A
DOI: 10.6084/m9.figshare.22492964
title: Function summary table from Expansion and evolution of the R programming language

description: R functions, associated packages and package categories, overall use count and values from Fig 2A
DOI: 10.6084/m9.figshare.22492970
title: Package use count by month from Expansion and evolution of the R programming language

description: Month (row) by column (package) counts in full dataset.
DOI: 10.6084/m9.figshare.22492970.v1
title: Package use count by month from Expansion and evolution of the R programming language

description: Month (row) by column (package) counts in full dataset.
DOI: 10.6084/m9.figshare.22492973
title: Package summary table from Expansion and evolution of the R programming language

description: R packages, package categories, overall use count and values from Fig 2B
DOI: 10.6084/m9.figshare.22492973.v1
title: Package summary table from Expansion and evolution of the R programming language

description: R packages, package categories, overall use count and values from Fig 2B
DOI: 10.5281/zenodo.7705955
title: Data, scripts, and figures of the article: The effect of oregano essential oils on Feed Passage Syndrome in broilers: 1. Assessment under field conditions

description: This data set contains the data, JMP scripts, and figures of the article titled "The effect of oregano essential oils on Feed Passage Syndrome in broilers: 1. Assessment under field conditions" to be published in the journal Animal - Open Space.
DOI: 10.5281/zenodo.7705954
title: Data, scripts, and figures of the article: The effect of oregano essential oils on Feed Passage Syndrome in broilers: 1. Assessment under field conditions

description: This data set contains the data, JMP scripts, and figures of the article titled "The effect of oregano essential oils on Feed Passage Syndrome in broilers: 1. Assessment under field conditions" to be published in the journal Animal - Open Space.
DOI: 10.5281/zenodo.7793535
title: Data, scripts, and figures of the article: The effect of oregano essential oils on Feed Passage Syndrome in broilers: 1. Assessment under field conditions

description: This data set contains the data, JMP scripts, and figures of the article titled "The effect of oregano essential oils on Feed Passage Syndrome in broilers: 1. Assessment under field conditions" to be published in the journal Animal - Open Space.
DOI: 10.6084/m9.figshare.22492991
title: Updated phylogenetic matrix based on Poropat et al. (2021a). from A nearly complete skull of the sauropod dinosaur <i>Diamantinasaurus matildae</i> from the upper cretaceous winton formation of Australia and implications for the early evolution of titanosaurs

description: Titanosaurian sauropod dinosaurs were diverse and abundant throughout the Cretaceous, with a global distribution. However, few titanosaurian taxa are represented by multiple skeletons, let alone skulls. <i>Diamantinasaurus matildae</i>, from the lower Upper Cretaceous Winton Formation of Queensland, Australia, was heretofore represented by three specimens, including one that preserves a braincase and several other cranial elements. Herein, we describe a fourth specimen of <i>Diamantinasaurus matildae</i> that preserves a more complete skull—including numerous cranial elements not previously known for this taxon—as well as a partial postcranial skeleton. The skull of <i>Diamantinasaurus matildae</i> shows many similarities to that of the coeval <i>Sarmientosaurus musacchioi</i> from Argentina (e.g. quadratojugal with posterior tongue-like process; braincase with more than one ossified exit for cranial nerve V; compressed-cone–chisel-like teeth), providing further support for the inclusion of both taxa within the clade Diamantinasauria. The replacement teeth within the premaxilla of the new specimen are morphologically congruent with teeth previously attributed to <i>Diamantinasaurus matildae</i>, and Diamantinasauria more broadly, corroborating those referrals. Plesiomorphic characters of the new specimen include a sacrum comprising five vertebrae (also newly demonstrated in the holotype of <i>Diamantinasaurus matildae</i>), rather than the six or more that typify other titanosaurs. However, we demonstrate that there have been a number of independent acquisitions of a six-vertebrae sacrum among Somphospondyli and/or that there have been numerous reversals to a five-vertebrae sacrum, suggesting that sacral count is relatively plastic. Other newly identified plesiomorphic features include: the overall skull shape, which is more similar to brachiosaurids than ‘derived' titanosaurs; anterior caudal centra that are amphicoelous, rather than procoelous; and a pedal phalangeal formula estimated as 2-2-3-2-0. These features are consistent with either an early-branching position within Titanosauria, or a position just outside the titanosaurian radiation, for Diamantinasauria, as indicated by alternative character weighting approaches applied in our phylogenetic analyses, and help to shed light on the early assembly of titanosaurian anatomy that has until now been obscured by a poor fossil record.
DOI: 10.6084/m9.figshare.22492991.v1
title: Updated phylogenetic matrix based on Poropat et al. (2021a). from A nearly complete skull of the sauropod dinosaur <i>Diamantinasaurus matildae</i> from the upper cretaceous winton formation of Australia and implications for the early evolution of titanosaurs

description: Titanosaurian sauropod dinosaurs were diverse and abundant throughout the Cretaceous, with a global distribution. However, few titanosaurian taxa are represented by multiple skeletons, let alone skulls. <i>Diamantinasaurus matildae</i>, from the lower Upper Cretaceous Winton Formation of Queensland, Australia, was heretofore represented by three specimens, including one that preserves a braincase and several other cranial elements. Herein, we describe a fourth specimen of <i>Diamantinasaurus matildae</i> that preserves a more complete skull—including numerous cranial elements not previously known for this taxon—as well as a partial postcranial skeleton. The skull of <i>Diamantinasaurus matildae</i> shows many similarities to that of the coeval <i>Sarmientosaurus musacchioi</i> from Argentina (e.g. quadratojugal with posterior tongue-like process; braincase with more than one ossified exit for cranial nerve V; compressed-cone–chisel-like teeth), providing further support for the inclusion of both taxa within the clade Diamantinasauria. The replacement teeth within the premaxilla of the new specimen are morphologically congruent with teeth previously attributed to <i>Diamantinasaurus matildae</i>, and Diamantinasauria more broadly, corroborating those referrals. Plesiomorphic characters of the new specimen include a sacrum comprising five vertebrae (also newly demonstrated in the holotype of <i>Diamantinasaurus matildae</i>), rather than the six or more that typify other titanosaurs. However, we demonstrate that there have been a number of independent acquisitions of a six-vertebrae sacrum among Somphospondyli and/or that there have been numerous reversals to a five-vertebrae sacrum, suggesting that sacral count is relatively plastic. Other newly identified plesiomorphic features include: the overall skull shape, which is more similar to brachiosaurids than ‘derived' titanosaurs; anterior caudal centra that are amphicoelous, rather than procoelous; and a pedal phalangeal formula estimated as 2-2-3-2-0. These features are consistent with either an early-branching position within Titanosauria, or a position just outside the titanosaurian radiation, for Diamantinasauria, as indicated by alternative character weighting approaches applied in our phylogenetic analyses, and help to shed light on the early assembly of titanosaurian anatomy that has until now been obscured by a poor fossil record.
DOI: 10.5281/zenodo.7720384
title: Data, scripts, and figures of the article: The effect of oregano essential oils on Feed Passage Syndrome in broilers: 2. Assessment under a challenge model

description: This data set contains the data, JMP scripts, and figures of the article titled "The effect of oregano essential oil on Feed Passage Syndrome in broilers: 2. Assessment under a challenge model" to be published in the journal Animal - Open Space.
DOI: 10.5281/zenodo.7720385
title: Data, scripts, and figures of the article: The effect of oregano essential oils on Feed Passage Syndrome in broilers: 2. Assessment under a challenge model

description: This data set contains the data, JMP scripts, and figures of the article titled "The effect of oregano essential oil on Feed Passage Syndrome in broilers: 2. Assessment under a challenge model" to be published in the journal Animal - Open Space.
DOI: 10.5281/zenodo.7793538
title: Data, scripts, and figures of the article: The effect of oregano essential oils on Feed Passage Syndrome in broilers: 2. Assessment under a challenge model

description: This data set contains the data, JMP scripts, and figures of the article titled "The effect of oregano essential oil on Feed Passage Syndrome in broilers: 2. Assessment under a challenge model" to be published in the journal Animal - Open Space.
DOI: 10.6084/m9.figshare.22491793
title: Data presented in "A method to computationally screen for tunable properties of crystalline alloys."

description: These files are a static database dump of the database presented in: <br> Woods-Robinson, R., Horton, M. K., & Persson, K. A. (2022). A method to computationally screen for tunable properties of crystalline alloys. arXiv preprint arXiv:2206.10715. <br> The database presented in this work is intended to be a living resource, and will be updated and revised over time. The files here are made available only a static snapshot to store a record of the latest version of the database available at the point in time that the manuscript was finalized. It is expected that the latest version will be available at Materials Project and users are strongly advised to retrieve the latest data when performing any follow-up work. This data will be available from the Materials Project API, https://materialsproject.org/api, and will be the most up-to-date, incorporating any new database additions or changes, and the latest bug fixes (where applicable). <br> The files in this snapshot can be loaded via either Python, using the `monty` package and its `loadfn` function, or via other JSON parsing libraries, or can be imported directly in MongoDB or similar database system. It is advisable to have the `pymatgen-analysis-alloys` package installed via `pip` or otherwise to make use of this data, version 0.0.6 or greater. Note that duplicates of the respective `AlloyPair` objects are not included within the `AlloySystem` records for reasons of space, but the relevant the `pair_id` identifiers are included, and these objects can be fully reconstructed as necessary from the data stored within the `alloy_pairs.json.gz` file. <br> Please refer any questions to the authors. <br> <br>