cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15027990.v1
title: Supplementary Material for: Impact of the COVID-19 Pandemic on Gastroenterology Department Activity: The Gastroenterologist’s Perspective Nationwide and the Real Impact in a Portuguese Center

description: <b><i>Background:</i></b> Several gastroenterology societies have created recommendations in order to reduce nonessential exposure to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus. Our aim is to evaluate the national gastroenterologists’ perspective on the impact of COVID-19 and the impact of reorganization of a gastroenterology department during the COVID-19 pandemic. <b><i>Methods:</i></b> For the first purpose, an online survey was distributed to gastroenterologists nationwide. For the second purpose, the authors conducted an analysis of some endoscopic procedures performed at the Gastroenterology Department of the Centro Hospitalar Vila Nova de Gaia/Espinho (CHVNG/E) between March 16 and May 8 during the years 2019 and 2020. <b><i>Results:</i></b> Sixty-seven gastroenterologists answered our survey. Only 14.9% were residents and 86.6% worked in a hospital with COVID-19 patients, with 16.4% assigned to assist those patients. All of the departments suffered modifications. Ninety percent of the residents affirmed that their activity had changed. Ninety-four percent declared having nonessential endoscopic procedures postponed, and 85.1% maintained in-person medical visits, 88.1% were already having remote consultations, and 11.9% did not have any clinical visit. In our gastroenterology unit, the number of endoscopic procedures decreased by 73.1% from 2019 to 2020. In 2020, the proportion of urgent procedures was higher compared to 2019. <b><i>Conclusion:</i></b> The advent of COVID-19 has led to important changes in gastroenterology activities in Portugal, and national gastroenterology units are complying with the recommendations. Furthermore, Portuguese gastroenterologists believed that the decrease in endoscopic activity can compromise residents’ education and training. The gastroenterology department at CHVNG/E has shown a significant reduction in the number of endoscopic procedures.
DOI: 10.17632/56r9zmjps2
title: ChemCLIP-seq method for transcriptome-wide mapping of small molecule RNA binding sites in cells

description: Herein, we discovered small molecules that bind cellular RNAs and precisely defined the binding site within most enriched targets in unbiased fashion.  The interactions between cellular RNAs in MDA-MB-231 triple negative breast cancer cells and a panel of small molecules appended with a diazirine cross-linking moiety and an alkyne tag were probed transcriptome-wide.  The alkyne tag allows for facile pull-down of cellular RNAs bound by each small molecule, and the enrichment of each RNA target defines the compound’s molecular footprint.  Of the 34 chemically diverse small molecules studied, six bind and enrich cellular RNAs.  Inter-estingly, modeling the structure of their RNA targets revealed that compounds bind to both highly structured regions as well as  sites with no easily discernable structure.  This is a supplemental dataset for our manuscript describing more in details about our method.
DOI: 10.17632/z6zp3cjsn3
title: Effects of Cooperative Versus Competitive Learning on EFL Students’ Writing

description: The purpose of this study was twofold: (1) to compare the effects of cooperative versus competitive learning experiences on EFL students’ writing, and (2) to explore the effects of gender on the overall writing performance under cooperative and competitive conditions.
DOI: 10.6084/m9.figshare.23635986.v1
title: Directed evolution unlocks oxygen reactivity for a nicotine degrading flavoenzyme

description: Data included in the publication "Directed evolution unlocks oxygen reactivity for a nicotine degrading flavoenzyme"
DOI: 10.6084/m9.figshare.27105997.v1
title: Data for "Teaching Social Skills to Adults with Autism Using Video Modeling" study.

description: <b>BACKGROUND: </b>The ability to socialize with fluency increases opportunities when pursuing one’s interests in all aspects of life including education, employment, recreation, and personal relationships.<b>OBJECTIVE:</b> This case study evaluated the effectiveness of a video peer-modeling intervention to evaluate its effectiveness on the acquisition and maintenance of social skills for three individuals with autism in a transition setting.<b>RESULTS:</b> At baseline, each of the three participants gave little to no response when greeted but after the video modeling and prompting intervention all three had acquired at least five out of six (83%) of the target behavior steps. Follow-up probes demonstrated that all three of the participants had maintained at least 4 out of 6 (67%) of the targeted steps weeks after the intervention phase had finished.<b>CONCLUSIONS: </b>These data suggest that using peer video modeling and prompting to teach social skills to adults with autism can be an effective educational intervention.
DOI: 10.6084/m9.figshare.3552132.v1
title: Appendix A. List of species in the data set and references for trait data.

description: List of species in the data set and references for trait data.
DOI: 10.6084/m9.figshare.5640664.v2
title: The fascicle load-displacement data

description: The fascicle load-displacement data <br>The quantitative data relating to the fascicle load-displacement characteristics are contained in tab-delimited text files. <br>These files are found in archived (zip) files, organized by age groups (Files 1–8).
DOI: 10.17632/72623m5xd3
title: GPR DATA

description: GPR data base
DOI: 10.6084/m9.figshare.26049538.v1
title: Deciphering spatial immunometabolism in a 3D co-culture of murine T cells and lung cancer cells using multiplexed imaging tools

description: Processed dataset for 3D co-culture of T cells and lung cancer cells.
DOI: 10.6084/m9.figshare.14762394.v2
title: Datasets for Cornet et al. The taxonomy of the Trichophyton rubrum complex: a phylogenomic approach

description: ├── Alignments│ ├── leel-3105-genes # DNA alignments of core genes│ └── orthofinder-3105-genes # Protein alignments of core genes├── AMAW-annotations │ ├── *-proteins.fasta # AMAW annotations├── Markers │ ├── OG0000291.fna # MYB DNA-binding domain-containing protein marker file │ └── OG0004200.fna # Ubiquitin-protein transferase marker file├── README├── SCaFoS│ ├── DNA # DNA concatenated dataset and informations│ └── PROT # Protein concatenated dataset and informations└── Unpublished-Large_DNA-phylogenies ├── DNA-large-BMGE_DNA-Codon1and2and3.tre # DNA large phylogeny: leel alignement, BMGE with codon option, no partition, GTRGAMMA ├── DNA-large-leel-Codon1and2and3.tre # DNA large phylogeny: leel alignment, no partition, GTRGAMMA ├── DNA-large-leel-Codon1and2.tre # DNA large phylogeny: leel alignment, only codon positions 1&2, no partition, GTRGAMMA └── DNA-large-leel-partitionCodon3.tre # DNA large phylogeny: leel alignment, partition on codon position 3, GTRGAMMA<br>
DOI: 10.6084/m9.figshare.22344283.v1
title: LBNL FDD SFPU Data Sets

description: The DOE and Berkeley Lab have partnered across the national laboratory complex and with the research community to curate, validate, and publish the world’s largest set of labeled time-series data representing commercial HVAC systems operating in faulted and fault-free states. The data sets currently cover rooftop units, single-duct air handler units, dual-duct air handler units, variable air volume boxes, fan coil units, chiller plant, and boiler plant. Each data set includes from 20 to more than 100 data points that are commonly monitored in today’s buildings. This operational data is paired with ground truth information indicating which faults are present during which time periods.
DOI: 10.6084/m9.figshare.25651065.v1
title: Digital-open. sav

description: 这是关于公司压力和数字流程创新绩效的调查数据。
DOI: 10.6084/m9.figshare.28827386.v1
title: <b>Soil microbial necromass shapes global carbon stocks in agricultural and natural ecosystems</b>

description: Soil carbon (C) plays an essential role in regulating global C cycle and climate. Microbial necromass is an important component of soil C, and yet the relative contribution of microbial necromass in shaping the global C stocks in agricultural and natural ecosystems worldwide remains virtually unknown. In this study, we compiled data on fungal and bacterial necromass along with soil organic carbon (SOC) from the 0–20 cm soil layer across 486 study sites (145 agricultural and 341 natural ecosystems) to evaluate the relative contribution of fungal necromass C (FNC) and bacterial necromass C (BNC) to SOC and the FNC/BNC ratio, after accounting for other biotic and abiotic factors. Our results indicated that, in both agricultural and natural ecosystems, the contribution of FNC to SOC significantly exceeded that of BNC, with FNC contributing approximately twice as much as BNC to SOC. However, the contributions of FNC and BNC to SOC were markedly higher in agricultural ecosystems than those in natural ecosystems, with a contrasting trend in the FNC/BNC ratio. Soil physicochemical properties (C/N and clay) were the most important predictors of the contributions of FNC and BNC to SOC in both ecosystems, while geographical factor (elevation) was the most important predictor of the FNC/BNC ratio. Our study enhances the current level of understanding regarding microbially mediated biogeochemical cycling and SOC dynamics, underscoring the critical role of microbial necromass in the global C cycle.
DOI: 10.6084/m9.figshare.7330361.v1
title: Human Serum Sample during acute ZIKV infection.

description: Human Serum Sample collected during acute ZIKV infection.
DOI: 10.17632/sbj87sjzf3
title: DTERRAIN: 3D inverse modeling of InSAR and surface displacement data

description: Software for the joint inversion of any surface displacement data (such as InSAR, leveling and GPS) to recover a three-dimensional distribution of volumetric deformation. The software finds the volumetric strain for each individual cell compartment of a 3D rectangular domain which justify the set of surface displacements registered in any spatial direction given their cosine directors (e.g. any line of sight, leveling or full GPS). The model is searched by setting a least-squares objective function composed by data misfit and smoothness constraints (minimum spatial deformation variation) and establishing a conjugate gradient search scheme. The software reports the full 3D deformation model and all the attained data residuals for model evaluation.
The software code is composed by three ASCII files with fortran source codes (*.f files). The documents include a sample input files for model preparation, which correspond to the synthetic example described in the associated manuscript "3D volumetric strain distribution of the Cerro Prieto Geothermal Field inferred from inverse modeling of InSAR and leveling data" by the same authors.
DOI: 10.6084/m9.figshare.3759327.v2
title: Critical current characterisation of THEVA Pro-Line 2G HTS superconducting wire

description: Detailed measurements of the critical current of a commercial 2G HTS REBCO wire as a function of temperature, magnetic field, and field angle, performed at the Robinson Research Institute of Victoria University of Wellington.
DOI: 10.17632/bwznhwgvyf
title: Plan de negocio de intervenciones de enfermería: Programa “Cuidando a los Cuidadores” 

description: Se presentan los datos del plan de negocio de intervenciones de enfermería: Programa “Cuidando a los Cuidadores”. Este plan abarca el análisis de costos del programa en el que se encuentra la estructura de costos actual y los costos totales del programa.  A su vez, se presenta el análisis económico en el que se incluyen los gastos administrativos pronosticados y el costo unitario por nivel pronosticado del programa. Además de ello, se presenta el análisis financiero que incorpora los ingresos proyectados  y el estado de resultados proyectado del programa.
DOI: 10.6084/m9.figshare.2068293.v1
title: global_neuromagnetic_cortical_fields.zip.001

description: Data files for "Neuromagnetic Fields have non-Zero Velocity"<br>
DOI: 10.6084/m9.figshare.22338283.v1
title: LBNL FDD Dataset SDAHU

description: The DOE and Berkeley Lab have partnered across the national laboratory complex and with the research community to curate, validate, and publish the world’s largest set of labeled time-series data representing commercial HVAC systems operating in faulted and fault-free states. The data sets currently cover rooftop units, single-duct air handler units, dual-duct air handler units, variable air volume boxes, fan coil units, chiller plant, and boiler plant. Each data set includes from 20 to more than 100 data points that are commonly monitored in today’s buildings. This operational data is paired with ground truth information indicating which faults are present during which time periods.
DOI: 10.6084/m9.figshare.23936562.v2
title: Forest Map 2020

description: Map of the forest coverage of Europe for the year 2020 matching the harmonized forest area statistics at the administrative unit.The map pixels with value = 1 represent the areas with forest cover, in units of ha (1 pixel = 1 ha).The map is available in GeoTIFF format at the spatial resolution of 100 x 100 m in ETRS89 LAEA (EPSG:3035) coordinate reference system for the extent of Europe (Forest_Map_2020.tif)
DOI: 10.17632/6rxntf7t96
title: Replication material for the heterogeneous impact of the EU-Canada agreement with causal machine learning

description: We present the replication code for the paper "The heterogeneous impact of the EU-Canada agreement with causal machine learning".
DOI: 10.17632/gkz7jbrrhm
title: LINF_180008000

description: RNA-binding protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/zsxnn8s35h
title: Effective reduction of refractory selenate by natural granite and claystone under gamma irradiation

description: Effective reduction of refractory selenate by natural granite and claystone under gamma irradiation
DOI: 10.6084/m9.figshare.26867287.v2
title: Ning et al denitrification data

description: Denitrification and DNRA in coral Communities
DOI: 10.6084/m9.figshare.3566334.v1
title: Appendix C. A list of primers used in the study for polymerase chain reaction amplification and sequencing of three mitochondrial and four nuclear loci.

description: A list of primers used in the study for polymerase chain reaction amplification and sequencing of three mitochondrial and four nuclear loci.
DOI: 10.17632/wn9t2cswgv
title: Global Salinity Gradient Energy Potential Database (ARA24)

description: This database provides an assessment of the Salinity Gradient Energy potential that can be harnessed from river mouths worldwide (also known as blue energy or osmotic energy). 
This resource integrates data on freshwater discharge, salinity, and temperature at river mouths globally, offering estimates of theoretical and extractable SGE potential alongside additional parameters of interest.

A detailed methodology, maps, and analyses derived from this database are presented in the manuscript:
Álvarez-Silva, O., Roldán-Carvajal, M., & Arévalo, F. "Extended assessment of the globally extractable salinity gradient energy from river mouths."
(submitted for publication on 13.12.2024).
When using this database, please cite the scientific paper and the dataset, prioritizing the scientific publication to ensure proper acknowledgment.

Inputs
1. Sea Surface Salinity: Data from the NASA Soil Moisture Active Passive (SMAP) observatory, specifically the JPL SMAP-SSS V5.0 CAP product.
2. Sea Surface Temperature: Data from the Moderate-resolution Imaging Spectrometer (MODIS) onboard NASA’s Aqua satellite, part of the Earth Observation System (EOS).
3. River Discharge Databases:
• Database 1 (N20): Multiannual average discharge (1980–2010) from 10,848 river mouths, derived from global models and satellite data as compiled by Nienhuis et al. (2020) DOI: 10.1038/s41586-019-1905-9. Used for assessing global theoretical SGE potential.
• Database 2 (ARA24): Monthly discharge data from 1,078 river mouths, compiled from global datasets and national hydrology agencies. Used for estimating extractable SGE potential.

Outputs
1. SGE_Global_Database_N20.xlsx:
A single-sheet dataset with data for 10,848 river mouths, including:
• River name, country, and ocean basin.
• Coordinates and multiannual average hydrological and oceanographic data.
• Energy density, theoretical potential, and regional summaries.

2. SGE_Global_Database_ARA24.xlsx: 
A multi-sheet dataset with data for 1,078 river mouths, including:
• Sheet 1: River names, locations (coordinates, country, region, continent, ocean basin), mean monthly discharge, environmental discharge, extraction factor, design flow, monthly extractable discharge, and capacity factor.
• Sheet 2: Monthly energy density variability.
• Sheet 3: Monthly variability and long-term averages of theoretical potential.
• Sheet 4: Monthly variability and long-term averages of extractable potential.
• Sheets 5-7: Monthly extractable potential summaries by ocean basin, country, and region, respectively.

3. SGE_Global_Viewer.exe: 
• An interactive application compiled in Matlab® to visualize ARA24 data.
• Users can adjust extraction factors and environmental discharge, with outputs including design flow, capacity factor, and extractable potential.
• The users do not require Matlab® installation or a software license.
DOI: 10.6084/m9.figshare.12430316.v3
title: Illumination Depth

description: The concept of illumination bodies studied in convex geometry is used to amend the halfspace depth for multivariate data. The proposed notion of illumination enables finer resolution of the sample points, naturally breaks ties in the associated depth-based ordering, and introduces a depth-like function for points outside the convex hull of the support of the probability measure. The illumination is, in a certain sense, dual to the halfspace depth mapping, and shares the majority of its beneficial properties. It is affine invariant, robust, uniformly consistent, and aligns well with common probability distributions. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.24027018.v1
title: LIBRE cheat sheet.pdf

description: This sheet helps identifying and organising parts (e.g. screws and nuts) and tools (Allen hex keys) during open hardware instrument assemblies.
DOI: 10.6084/m9.figshare.1518535.v1
title: Loss of X chromosome inactivation research data files

description: Loss of X chromosome inactivation research data files. These data are processed from data of TCGA endometrial cancer.
DOI: 10.17632/jn8y4v6r2s
title: Data for: Asynchronous δ13Ccarb and δ13Corg records during the onset of the Mulde (Silurian) positive carbon isotope excursion from the Altajme core, Gotland, Sweden

description: Carbonate carbon and organic carbon isotope data from the Mulde Event in the Altajme Drill Core, Gotland Sweden
DOI: 10.17632/xy4x5fkbnz
title: Tegosept strips for fly vials

description: Solution to make strips for drosophila vials to inhibit microbial growth in food.  Particularly useful for sickly stocks.
DOI: 10.6084/m9.figshare.12649511.v2
title: Supplementary Table S1

description: Table S1. Lab IDs (DWW#), field/catalog numbers, taxonomic assignments, and locality information for specimens included in this study. Abbreviations in the Field or Catalog Number column are as follows: MVZ = Museum of Vertebrate Zoology at Berkeley; PM = Paul Moler; KW = Kenny Wray; ECM = Emily Lemmon; GP = Gabriela Parra-Olea; GH/LZ = Garardo Herrera/Luis Zambrano; JPB = Jim Bogart; HBS = H. Bradley Shaffer; SC = Sheri Church; AS = Andrew Storfer; KC/CB = Ken Carbale/Chris Beachy; JFBM = J.F. Bell Museum of Natural History, University of Minnesota; OMNH = Sam Noble Oklahoma Museum of Natural History; JBL = Jeff LeClere; CDH = Carol Hall; DNR = U.S. Division of Natural Resources Staff; MHP = Museum of the High Plains; NS = Nancy Staub.
DOI: 10.6084/m9.figshare.22691356.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.28532852.v1
title: Genome_annotation.zip

description: The genome annotation of <i>Liriomyza sativae</i>
DOI: 10.6084/m9.figshare.5435953.v2
title: MusicNet

description: MusicNet offers music characterizations. This Data Set contains the results obtained after the analysis of pieces of MIDI music. The analysis was performed by applying the concept of Fundamental Scale: the set of symbols producing the minimal entropy when reading a text consisting of a large sequence of characters. Each piece is characterized by its character-length. The results are presented in terms of symbolic diversity, entropy, and second order entropy. These characterizations of music allow to represent music pieces, composers, styles and periods in a 3-dimensional space with symbolic diversity, entropy, and second order entropy as its axis. The MIDI pieces analyzed for each style of music can be found at these DOIs:Medieval: 10.6084/m9.figshare.5435983Renaissance: 10.6084/m9.figshare.5435992Baroque: 10.6084/m9.figshare.5435995Classical: 10.6084/m9.figshare.5436010Romantic: 10.6084/m9.figshare.5436013Impressionistic: 10.6084/m9.figshare.5436016Twentieth: 10.6084/m9.figshare.5436019Chinese: 10.6084/m9.figshare.5436022Hindu Raga: 10.6084/m9.figshare.5436025Venezuelan: 10.6084/m9.figshare.5436106Rock: 10.6084/m9.figshare.5436031 Movie Themes: 10.6084/m9.figshare.5436034Rock: 10.6084/m9.figshare.5436031 Movie Themes: 10.6084/m9.figshare.5436034
DOI: 10.6084/m9.figshare.23613489.v2
title: MetaAnalysisDataIO.xlsx

description: Data file with articles on phase I/II clinical trials using immune checkpoint inhibitors identified in the PubMed search. It includes the following information on clinical trials using : number of patients; age (median, range); tumor type; immunotherapy agent; monotherapy or combination therapy; biomarker and use (prospective or not); number of patients in the marker-positive and marker-negative cohorts; line of therapy; prior therapies; biomarker association with resistance or sensitivity to immunotherapy.
DOI: 10.6084/m9.figshare.29120588.v1
title: artefato.rar

description: AAAA
DOI: 10.17632/b33xxnpfyw
title: PIPERS Waves in Ice Observations

description: The aim of this project was to observe wave propagation in the marginal ice zone (MIZ). A series of 14 wave buoys were deployed on ice floes during the 2017 National Science Foundation supported Polynyas, Ice Production & seasonal Evolution in the Ross Sea (PIPERS) voyage. There were two separate deployments. The first on the way into the ice (buoys 21, 22, 23 and 31) and the remaining on the way out. Each sensor performed on-board spectral analysis and data quality control. The data was returned via Iridium data packets. Ship based operations were funded through the US National Science Foundation. The instrumentation development and construction was funded through New Zealand's National Institute of Water and Atmospheric Research. The science development and analysis was funded through New Zealands Deep South National Science Challenge: Antarctic Sea Ice. The wave buoys were manufactured by P.A.S consultants, Melbourne, Australia.