cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.eja96h
title: Occurrence Download

description: A dataset containing 2159377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "PublishingCountry is Canada",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 2159377 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033735-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3621506_d4
title: MOESM3 of Seasonal cues induce phenotypic plasticity of Drosophila suzukii to enhance winter survival

description: Additional file 3: Table S2. Functional Annotation Clustering of genes that are significantly up-regulated in the winter fly bodies relative to summer bodies as determined by DAVID.
DOI: 10.6084/m9.figshare.c.3621530_d4
title: Additional file 2: Table S2. of Comprehensive transcriptional landscape of aging mouse liver

description: Expression level, fold change, and biotype of each significantly differentially expressed transcript between young and old livers. (XLSX 287 kb)
DOI: 10.6084/m9.figshare.c.3621530_d5
title: Additional file 4: Table S4. of Comprehensive transcriptional landscape of aging mouse liver

description: List of top GO terms from upregulated differentially expressed genes used to make Fig.Â 3a. (XLSX 198 kb)
DOI: 10.6084/m9.figshare.c.3621506_d6
title: MOESM7 of Seasonal cues induce phenotypic plasticity of Drosophila suzukii to enhance winter survival

description: Additional file 7: Table S6. Table of differentially expressed genes in bodies of winter morphs of D. suzukii relative to those of summer morphs. Fold change represents the ratio of expression levels of winter to summer morphs.
DOI: 10.6084/m9.figshare.c.3621530_d6
title: Additional file 3: Table S3. of Comprehensive transcriptional landscape of aging mouse liver

description: List of top differentially expressed isoforms between young and old livers. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.c.3621551_d2
title: Additional file 1: Table S1. of Development of a group contribution method for estimating free energy of peptides in a dodecane-water system via molecular dynamic simulations

description: Size of simulation boxes for single aminoacids. Table S2. Size for simulation boxes for pairs simulations. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3621530_d7
title: Additional file 6: Table S6. of Comprehensive transcriptional landscape of aging mouse liver

description: List of primer sets used in RNAseq validation. Custom ncRNA primers are provided with a forward and reverse primer while TaqMan Assay ID is given for all others. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3621506_d7
title: MOESM9 of Seasonal cues induce phenotypic plasticity of Drosophila suzukii to enhance winter survival

description: Additional file 9: Table S8. Table of differentially expressed genes in heads of winter morph of D. suzukii relative to those of summer morphs. Fold change represents the ratio of expression levels of winter to summer morphs.
DOI: 10.6084/m9.figshare.c.3621605_d2
title: Additional file 1: Table S1. of Purifying selection acts on coding and non-coding sequences of paralogous genes in Arabidopsis thaliana

description: Expression values and TAU (tissue specificity) values of A. thaliana genes. Table S2. Paralogous gene pairs in A. thaliana; their expression levels and TAU values. Table S3. List of one randomly selected gene from every similarly expressed paralogous pair. Table S4. Normalized expression values of A. thaliana and A. lyrata orthologs. Table S5. rho values from 10,000 permutations. Table S6. Full list of significantly enriched GO terms. Table S7. Tissue with highest gene expression for differentially expressed paralogous genes. Table S8. CNSs found at A. thaliana genes. Table S9. Statistics for the correlation between the number of CNSs at paralogous genes and expression levels. Table S10. mRNA half-life data for genes included in this study. Table S11. mRNA half-life data for paralogous pairs that have 3â ˛ UTR CNSs in one gene only. (XLSX 6431 kb)
DOI: 10.6084/m9.figshare.c.3621611_d1
title: Additional file 2: Table S5. of Immunoseq: the identification of functionally relevant variants through targeted capture and sequencing of active regulatory regions in human immune cells

description: Rare and novel variants identified using Immunoseq and DHS cell-type they fall into. (XLSX 2.46Â mb)
DOI: 10.15468/dl.ysp24h
title: Occurrence Download

description: A dataset containing 1572 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes albopictus (Skuse, 1894)",
 "Country is Colombia",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 1572 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033741-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ak4z9t
title: Occurrence Download

description: A dataset containing 468 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes scutellaris (Walker, 1858)"
 ]
}

 The dataset includes 468 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033742-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3621713_d1
title: Additional file 4: Table S5. of Systematic analysis of chromatin interactions at disease associated loci links novel candidate genes to inflammatory bowel disease

description: Pathway analyses. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.c.3621710_d1
title: Additional file 3: Table S1. of ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass)

description: Pfam families most represented in ALOMYbase. Table S2. Primers used for RT-qPCR validation of ALOMYbase RNA-Seq expression data. Table S3. Expression patterns of the ALOMYbase contigs that are the most likely homologs of transcripts identified in Arabidopsis thaliana as herbicide response markers allowing to differentiate the action of five herbicides, including four ALS inhihitors (IMAZ, imazapyr; PRIM, primisulfuron; CLOR, clorasulam; SULF, sulfometuron). Table S4. Functional annotation of the 253 contigs up-regulated in all herbicide-treated modalities in both the resistant and the sensitive pools. Table S5. GO Biological Processes significantly enriched in contigs up-regulated in both phenotypes (resistant and sensitive pools) after herbicide application. Table S6. GO Biological Processes significantly enriched in contigs down-regulated in both phenotypes (resistant and sensitive pools) after herbicide application. Table S7. GO Biological Processes significantly enriched in contigs up-regulated after herbicide application only in the sensitive pool. Table S8. GO Biological Processes significantly enriched in contigs down-regulated after herbicide application only in the sensitive pool. Table S9. GO Biological Processes significantly enriched in contigs up-regulated after herbicide application only in the resistant pool. Table S10. GO Biological Processes significantly enriched in contigs down-regulated after herbicide application only in the resistant pool. Table S11. Primers used for RT-qPCR measurement of candidate NTSR contig expression. (XLSX 125 kb)
DOI: 10.6084/m9.figshare.c.3621704_d3
title: Additional file 1: of Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor

description: Information on P+, P-, NP+, OP+, SP+ and SP- datasets. The experimental source of interaction data, organisms, relevant references and prediction scores of the MetaPred2CS, Bayesian method and STRING are provided. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3621713_d2
title: Additional file 3: Table S4. of Systematic analysis of chromatin interactions at disease associated loci links novel candidate genes to inflammatory bowel disease

description: eQTL analyses. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3621713_d3
title: Additional file 5: Table S6. of Systematic analysis of chromatin interactions at disease associated loci links novel candidate genes to inflammatory bowel disease

description: Upstream regulators. (XLSX 135 kb)
DOI: 10.6084/m9.figshare.c.3621713_d4
title: Additional file 7: Table S3. of Systematic analysis of chromatin interactions at disease associated loci links novel candidate genes to inflammatory bowel disease

description: Publicly available datasets. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3621713_d6
title: Additional file 1: Table S2. of Systematic analysis of chromatin interactions at disease associated loci links novel candidate genes to inflammatory bowel disease

description: 4C datasets. (XLSX 43677 kb)
DOI: 10.6084/m9.figshare.c.3621764_d3
title: Additional file 3: of Identification of priorities for improvement of medication safety in primary care: a PRIORITIZE study

description: Framework used for analysis of Contributing Factors to medication safety in primary care (based on the London protocol). (ODT 5Â kb)
DOI: 10.6084/m9.figshare.c.3621764_d4
title: Additional file 6: Table S6. of Identification of priorities for improvement of medication safety in primary care: a PRIORITIZE study

description: Ranking of all (45) solutions to medication-related problems from primary care cliniciansâ   perspective (AEA range: 0 to 1). (ODT 17Â kb)
DOI: 10.15468/dl.yuq7rz
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes septemstriatus Dyar & Knab, 1907"
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033743-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3621860_d2
title: Additional file 3: of Transcriptome profiling of Diachasmimorpha longicaudata towards useful molecular tools for population management

description: List of SSRs and primers. (XLSX 856 kb)
DOI: 10.6084/m9.figshare.c.3621794_d9
title: Additional file 2: Table S2. of Analysis of Allelic Imbalance in Rice Hybrids Under Water Stress and Association of Asymmetrically Expressed Genes with Drought-Response QTLs

description: List of genes in the hybrids with SNPs between the two parent-specific alleles under water-stress conditions. (XLSX 220 kb)
DOI: 10.6084/m9.figshare.c.3621887_d8
title: Additional file 6: of Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach

description: Putative catalogue of synaptic genes. A .csv file with the final catalogue of 893 Drosophila genes that according to the three algorithms have a probability above 90 % of being involved in synapse assembly and function. (CSV 35 kb)
DOI: 10.6084/m9.figshare.c.3621794_d15
title: Additional file 7: Table S5. of Analysis of Allelic Imbalance in Rice Hybrids Under Water Stress and Association of Asymmetrically Expressed Genes with Drought-Response QTLs

description: Pairwise comparison of the expression preference of the hybrid genes exposed under normal and water-stress conditions. It shows the condition-mediated changes in expression preference of each gene. (XLSX 155 kb)
DOI: 10.6084/m9.figshare.c.3621914_d1
title: Additional file 1: Table S1. of Conserved antigenic sites between MERS-CoV and Bat-coronavirus are revealed through sequence analysis

description: Sequence related information. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3621965_d5
title: Additional file 3: of Determining the mode of action of anti-mycobacterial C17 diyne natural products using expression profiling: evidence for fatty acid biosynthesis inhibition

description: Enriched pathways for each treatment group. (XLSX 32 kb)
DOI: 10.15468/dl.252k7v
title: Occurrence Download

description: A dataset containing 775 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes serratus (Theobald, 1901)"
 ]
}

 The dataset includes 775 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033744-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3622001_d3
title: Additional file 2: of HiFive: a tool suite for easy and efficient HiC and 5C data analysis

description: A tar archive containing the HiFive software library. (BZ2 578 kb)
DOI: 10.6084/m9.figshare.c.3622073_d1
title: Additional file 4: of Gene and transposable element methylation in great tit (Parus major) brain and blood

description: Full GO-enrichment analysis for upper and lower non-CpG methylated genes: Tables S1 to S6. (XLSX 126Â kb)
DOI: 10.6084/m9.figshare.c.3622073_d2
title: Additional file 2: of Gene and transposable element methylation in great tit (Parus major) brain and blood

description: Full GO-enrichment analysis for differentially methylated gene features: Tables S1 to S6. (XLSX 169Â kb)
DOI: 10.15468/dl.emjp7w
title: Occurrence Download

description: A dataset containing 466 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Milvago chimachima (Vieillot, 1816)"
 ]
}

 The dataset includes 466 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033745-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3622136_d2
title: Additional file 1: of Increased alternate splicing of Htr2c in a mouse model for Prader-Willi syndrome leads disruption of 5HT2C receptor mediated appetite

description: Hypothalamus qPCR analysis. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3622136_d3
title: Additional file 3: of Increased alternate splicing of Htr2c in a mouse model for Prader-Willi syndrome leads disruption of 5HT2C receptor mediated appetite

description: PWS feeding and serotonin pharmacology. (XLS 173 kb)
DOI: 10.6084/m9.figshare.c.3622136_d4
title: Additional file 2: of Increased alternate splicing of Htr2c in a mouse model for Prader-Willi syndrome leads disruption of 5HT2C receptor mediated appetite

description: Pomc, AgRP, Npy, Bdnf densitometry. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3622082_d14
title: Additional file 1: Table S1. of Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data

description: Sample description. Intermediate headers show database size and analysis time running with 1 thread (1×) or 20 threads (20×) for each CNIDARIA database group. Each line contains a list of the names of the samples used, sequence ID, source type, source name, reference, size of JELLYFISH database, size of input data, GC content, percentage of Ns, number of sequences in the input data and list of samples used in the REFERENCEFREE comparison. For each k-mer size (11, 15, 17, 21 and 31 bp): number of distinct k-mers, total number of k-mers, number of k-mers occurring only once, number of shared k-mers and percentage of k-mers shared. Input data is in the form of assembled genome (genomic - fasta files), raw genomic data (raw - fastq or BAM), filtered genomic data (raw filtered - BAM) or RNA-seq. The 34 samples of the extended dataset were used exclusively against the 21-mer dataset. Analysis time and database sizes are calculated for each dataset and do not correspond to the sum of the partial times and sizes. (XLS 87 kb)
DOI: 10.6084/m9.figshare.c.3622160_d1
title: Additional file 7: of The idiopathic preterm delivery methylation profile in umbilical cord blood DNA

description: DMPs shared between groups. (XLS 155Â kb)
DOI: 10.6084/m9.figshare.c.3622160_d2
title: Additional file 3: of The idiopathic preterm delivery methylation profile in umbilical cord blood DNA

description: a. Systematic differences (DMPs) Term vs Preterm. b. Term vs Preterm-wikipathways. (ZIP 99Â kb)
DOI: 10.15468/dl.h34aap
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes sexlineatus (Theobald, 1901)"
 ]
}

 The dataset includes 89 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033746-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3622178_d5
title: Additional file 10: of Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wo
                     v gene in tobacco

description: Differentially expressed transcription factors found in the Wo v transgenic tobacco plants compared with its wild type. (XLS 34Â kb)
DOI: 10.6084/m9.figshare.c.3622187_d3
title: Additional file 4: Table S2. of Variation in population levels of sedentary time in European adults according to cross-European studies: a systematic literature review within DEDIPAC

description: The Quality assessment file (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3622172_d4
title: Additional file 2: Table S1. of Characterization of VHL missense mutations in sporadic clear cell renal cell carcinoma: hotspots, affected binding domains, functional impact on pVHL and therapeutic relevance

description: VHL mutation type, Fuhrman grade and tumor stage of 360 ccRCC. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3622268_d3
title: MOESM1 of The devil is in the detail: estimating species richness, density, and relative abundance of tropical island herpetofauna

description: Additional files 1: Abundance and species richness data of frogs in the Andaman Islands collected by using open quadrats and bounded quadrats.
DOI: 10.6084/m9.figshare.c.3622277_d1
title: Additional file 3: of MiR-210 promotes sensory hair cell formation in the organ of corti

description: Table of miRNA raw counts. Raw counts from sequencing of each of the small miRNA libraries. The number of sequences that correspond to each miRNA is listed. (XLSM 60Â kb)
DOI: 10.6084/m9.figshare.c.3622280_d1
title: Additional file 6: of Rapid genomic changes in Drosophila melanogaster adapting to desiccation stress in an experimental evolution system

description: Table listing the regions of putative soft selection sweeps. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3622280_d2
title: Additional file 3: of Rapid genomic changes in Drosophila melanogaster adapting to desiccation stress in an experimental evolution system

description: Table listing the putative new mutations in desiccation lines. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3622283_d1
title: Additional file 1: of Comorbidities and factors associated with central nervous system infections and death in non-perinatal listeriosis: a clinical case series

description: Data on non-perinatal listeriosis cases collected in two Belgian university hospitals: ‘Le centre hospitalier universitaire’ (CHU) in Liège in the period 2003-2013 and ‘Les cliniques universitaires saint Luc’ (UCL) in Brussels in the period 1978-2014 (April). (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3622271_d4
title: Additional file 1: of Heritable components of the human fecal microbiome are associated with visceral fat

description: Supplementary Tables. Table S1. OTUs showing at least moderate (A &gt;0.2) heritability in the extended TwinsUK 16S dataset. Each variance component, additive genetics (A, or heritability), shared environment (C) and unique environment (E) shown along with upper and lower 95Â % confidence intervals. Average relative abundance of the OTUs in the overall dataset is also shown. Table S2. 149 Bonferroni-significant OTU-adiposity associations. OTU-adiposity results are obtained from linear mixed effects regression models and include the original results (OTU-Adiposity) and results after adjustment for BMI (OTU-Adiposity BMI-adjusted). We also provide the OTU heritability and average OTU abundance in the cohort. The last two columns show the OTU results from the within MZ twin-pair difference analyses (MZ Diff Beta), and whether the MZ results were concordant with the linear mixed effects results. Reported phenotypes are visceral fat (VFM), subcutaneous fat (SFM), android/gynoid ratio (AGR), BMI, waist/hip ratio (WHR) and % trunk fat (pTF). Table S3. Genus-level associations with adiposity, where the collapsed taxonomy OTU genus was significantly associated with adiposity. Reported phenotypes are visceral fat (VFM), subcutaneous fat (SFM), android/gynoid ratio (AGR) and BMI. Table S4. Replication of TwinsUK (TUK-D) results in three independent cohorts, the American Gut (AG), the Flemish Gut Flora Project (FGFP) and the expanded TwinsUK dataset (TUK-R). The table lists the 97 OTUs forming 149 significant adiposity associations in TwinsUK and their association with BMI in both the replication and discovery samples. In addition, the table outlines the results of two meta-analyses that were performed across the studies, the first of just the independent cohorts, and the second including the discovery cohort. Finally, the last section of the table shows which OTUs were replicated in at least one of the replication cohorts. Table S5. Human genomic analyses at adiposity-related candidate host genes FHIT, TDRG1 and ELAVL4. The table shows significant genetic associations between the adiposity-related candidate host genetic variants and adiposity-associated OTUs. The final three columns summarize the results of the association between the host genetic variants and DNA methylation at CpG sites targeted by the Illumina 450Â k array. DNA methylation association was performed at the lead OTU-associated SNP in each locus; therefore, rs1433722 was not tested (NA). Table S6. List of the 97 BMI-associated loci reported in Locke et al. [8] that were used for analysis in this study. The last column denotes the BMI GWAS P values from Locke et al. [8]. Table S7. Demographics of the TwinsUK microbiome discovery sample and the American Gut replication sample. Table S8. ENA accession IDs for samples in this study currently available online and basic metadata. (XLSX 252 kb)
DOI: 10.6084/m9.figshare.c.3622277_d3
title: Additional file 1: of MiR-210 promotes sensory hair cell formation in the organ of corti

description: Number of miRSeq reads and alignment statistics. (XLSM 8Â kb)
DOI: 10.6084/m9.figshare.c.3622280_d3
title: Additional file 9: of Rapid genomic changes in Drosophila melanogaster adapting to desiccation stress in an experimental evolution system

description: Table listing the enrichment analysis of genes in putative hard sweeps. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3622286_d2
title: Additional file 1: of Perioperative cerebrospinal fluid and plasma inflammatory markers after orthopedic surgery

description: Cytokine data. (XLSX 73 kb)