cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13295660
title: Analyzing Big Data with Novel Combinatorial approach - Supplementary Data

description: All the additional data information related to the thesis work are deposited here. <br>
DOI: 10.17608/k6.auckland.12886745.v3
title: Untangling the genetic link between type 1 and type 2 diabetes using functional genomics

description: All datasets and supplementary information for this article.
DOI: 10.6084/m9.figshare.13332515
title: Supplementary Material for: Healthcare Professional Clinical Actions following Nutrigenomics Testing in Practice

description: <b><i>Background:</i></b> Clinical demand for nutrigenomics testing (NGT) is increasing, underscoring the importance of assessing healthcare professional (HCP) competence and clinical actions with NGT in practice. While previous studies have explored HCP perceptions of NGT, no study has examined real HCP experiences with NGT in practice. <b><i>Objective:</i></b> The objective of this study was to evaluate the clinical experience of providing NGT among early adopter HCPs who have used NGT in their practice. We hypothesized that HCP clinical actions after NGT would differ according to HCP personal experience undergoing genetic testing (GT) as well as years in practice. <b><i>Design:</i></b> An online survey questionnaire was administered to HCPs (<i>n</i> = 70) who have provided NGT in practice. χ<sup>2</sup> tests, tests for trend, and logistic regression were used to compare HCP characteristics with post-NGT outcomes. <b><i>Results:</i></b> HCPs with fewest years in practice (&lt;5 years) comprised the lowest proportion of respondents (16%). Most HCPs reported good understanding of NGT results and 92% made genetic-based dietary recommendations to patients following NGT. HCP personal use of GT increased significantly with increasing years in practice (&lt;5 years: 36%, 5–10 years: 53%, 11–20 years: 70%, and &gt;20 years: 85%, <i>p</i> trend = 0.003). Requesting patient bloodwork because of NGT results increased significantly with HCP years in practice when HCPs with &lt;5 years in practice were not considered (5–10 years: 19%, 11–20 years: 28%, and &gt;20 years: 60%, <i>p</i> trend = 0.010). A near significant difference was observed where a greater proportion of HCPs who had personally undergone GT reported requesting patient bloodwork (personal use: 46% vs. no personal use: 23%, <i>p</i>-χ<sup>2</sup> = 0.066). <b><i>Conclusion:</i></b> Early HCP adopters of NGT utilize the test results to provide genetic-based dietary recommendations to patients. Clinical action after NGT currently appears to be driven by HCP years in practice, but HCP personal use of GT may also be a factor.
DOI: 10.6084/m9.figshare.13065986.v29
title: Gastric cancer lymph node data set

description: This is a dataset of pathological lymph nodes for gastric cancer. It can be used to test a gastric cancer lymph node metastasis detection model proposed in "Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning".<br>
DOI: 10.5281/zenodo.4305493
title: Open Data for Role of Inter-Cluster and Inter-Ligand Dynamics of [Ag25(DMBT)18]– Nanoclusters by Multinuclear Magnetic Resonance Spectroscopy.

description: Open Data for publication "Role of Inter-Cluster and Inter-Ligand Dynamics of [Ag<sub>25</sub>(DMBT)<sub>18</sub>]<sup>–</sup> Nanoclusters by Multinuclear Magnetic Resonance Spectroscopy" published in The Journal of Physical Chemistry.
DOI: 10.5281/zenodo.4305492
title: Open Data for Role of Inter-Cluster and Inter-Ligand Dynamics of [Ag25(DMBT)18]– Nanoclusters by Multinuclear Magnetic Resonance Spectroscopy.

description: Open Data for publication "Role of Inter-Cluster and Inter-Ligand Dynamics of [Ag<sub>25</sub>(DMBT)<sub>18</sub>]<sup>–</sup> Nanoclusters by Multinuclear Magnetic Resonance Spectroscopy" published in The Journal of Physical Chemistry.
DOI: 10.5281/zenodo.4305489
title: Dataset From: Structural and double layer forces between silica surfaces in suspensions of negatively charged nanoparticles

description: The dataset for the publication "Structural and double layer forces between silica surfaces in suspensions of negatively charged nanoparticles". DOI: 10.1021/acs.langmuir.0c02917. Files containing data have .dat extension and are in text format
DOI: 10.5281/zenodo.4305488
title: Dataset From: Structural and double layer forces between silica surfaces in suspensions of negatively charged nanoparticles

description: The dataset for the publication "Structural and double layer forces between silica surfaces in suspensions of negatively charged nanoparticles". DOI: 10.1021/acs.langmuir.0c02917. Files containing data have .dat extension and are in text format
DOI: 10.25345/c52z15
title: MassIVE MSV000086554 - Mexican Bursera - Certified resins
title: Analysis of resins of botanically cetified samples of Mexican Bursera spp
DOI: 10.6084/m9.figshare.13332524
title: Supplementary Material for: Extracorporeal Ammonia Clearance for Hyperammonemia in Critically Ill Patients: A Scoping Review

description: <b><i>Introduction:</i></b> Hyperammonemia is a life-threatening condition. However, clearance of ammonia via extracorporeal treatment has not been systematically evaluated. <b><i>Methods:</i></b> We searched EMBASE and MEDLINE databases. We included all publications reporting ammonia clearance by extracorporeal treatment in adult and pediatric patients with clearance estimated by direct dialysate ammonia measurement or calculated by formula. Two reviewers screened and extracted data independently. <b><i>Results:</i></b> We found 1,770 articles with 312 appropriate for assessment and 28 studies meeting eligibility criteria. Most of the studies were case reports. Hyperammonemia was typically secondary to inborn errors of metabolisms in children and to liver failure in adult patients. Ammonia clearance was most commonly reported during continuous renal replacement therapy (CRRT) and appeared to vary markedly from &lt;5 mL/min/m<sup>2</sup> to &gt;250 mL/min/m<sup>2</sup>. When measured during intermittent hemodialysis (IHD), clearance was highest and correlated with blood flow rate (<i>R</i><sup>2</sup> = 0.853; <i>p</i> &lt; 0.001). When measured during CRRT, ammonia clearance could be substantial and correlated with effluent flow rate (EFR; <i>R</i><sup>2</sup> = 0.584; <i>p</i> &lt; 0.001). Neither correlated with ammonia reduction. Peritoneal dialysis (PD) achieved minimal clearance, and other extracorporeal techniques were rarely studied. <b><i>Conclusions:</i></b> Extracorporeal ammonia clearance varies widely with sometimes implausible values. Treatment modality, blood flow, and EFR, however, appear to affect such clearance with IHD achieving the highest values, PD achieving minimal values, and CRRT achieving substantial values especially at high EFRs. The role of other techniques remains unclear. These findings can help inform practice and future studies.
DOI: 10.6084/m9.figshare.13332524.v1
title: Supplementary Material for: Extracorporeal Ammonia Clearance for Hyperammonemia in Critically Ill Patients: A Scoping Review

description: <b><i>Introduction:</i></b> Hyperammonemia is a life-threatening condition. However, clearance of ammonia via extracorporeal treatment has not been systematically evaluated. <b><i>Methods:</i></b> We searched EMBASE and MEDLINE databases. We included all publications reporting ammonia clearance by extracorporeal treatment in adult and pediatric patients with clearance estimated by direct dialysate ammonia measurement or calculated by formula. Two reviewers screened and extracted data independently. <b><i>Results:</i></b> We found 1,770 articles with 312 appropriate for assessment and 28 studies meeting eligibility criteria. Most of the studies were case reports. Hyperammonemia was typically secondary to inborn errors of metabolisms in children and to liver failure in adult patients. Ammonia clearance was most commonly reported during continuous renal replacement therapy (CRRT) and appeared to vary markedly from &lt;5 mL/min/m<sup>2</sup> to &gt;250 mL/min/m<sup>2</sup>. When measured during intermittent hemodialysis (IHD), clearance was highest and correlated with blood flow rate (<i>R</i><sup>2</sup> = 0.853; <i>p</i> &lt; 0.001). When measured during CRRT, ammonia clearance could be substantial and correlated with effluent flow rate (EFR; <i>R</i><sup>2</sup> = 0.584; <i>p</i> &lt; 0.001). Neither correlated with ammonia reduction. Peritoneal dialysis (PD) achieved minimal clearance, and other extracorporeal techniques were rarely studied. <b><i>Conclusions:</i></b> Extracorporeal ammonia clearance varies widely with sometimes implausible values. Treatment modality, blood flow, and EFR, however, appear to affect such clearance with IHD achieving the highest values, PD achieving minimal values, and CRRT achieving substantial values especially at high EFRs. The role of other techniques remains unclear. These findings can help inform practice and future studies.
DOI: 10.6084/m9.figshare.13332596
title: Supplementary Material for: Pedunculopontine Nucleus Deep Brain Stimulation for Parkinsonian Disorders: A Case Series

description: <b><i>Background:</i></b> Deep brain stimulation (DBS) of the pedunculopontine nucleus (PPN) has been investigated for the treatment of levodopa-refractory gait dysfunction in parkinsonian disorders, with equivocal results so far. <b><i>Objectives:</i></b> To summarize the clinical outcomes of PPN-DBS-treated patients at our centre and elicit any patterns that may guide future research. <b><i>Materials and Methods:</i></b> Pre- and post-operative objective overall motor and gait subsection scores as well as patient-reported outcomes were recorded for 6 PPN-DBS-treated patients, 3 with Parkinson’s disease (PD), and 3 with progressive supranuclear palsy (PSP). Electrodes were implanted unilaterally in the first 3 patients and bilaterally in the latter 3, using an MRI-guided MRI-verified technique. Stimulation was initiated at 20–30 Hz and optimized in an iterative manner. <b><i>Results:</i></b> Unilaterally treated patients did not demonstrate significant improvements in gait questionnaires, UPDRS-III or PSPRS scores or their respective gait subsections. This contrasted with at least an initial response in bilaterally treated patients. Diurnal cycling of stimulation in a PD patient with habituation to the initial benefit reproduced substantial improvements in freezing of gait (FOG) 3 years post-operatively. Among the PSP patients, 1 with a parkinsonian subtype had a sustained improvement in FOG while another with Richardson syndrome (PSP-RS) did not benefit. <b><i>Conclusions:</i></b> PPN-DBS remains an investigational treatment for levodopa-refractory FOG. This series corroborates some previously reported findings: bilateral stimulation may be more effective than unilateral stimulation; the response in PSP patients may depend on the disease subtype; and diurnal cycling of stimulation to overcome habituation merits further investigation.
DOI: 10.6084/m9.figshare.13332596.v1
title: Supplementary Material for: Pedunculopontine Nucleus Deep Brain Stimulation for Parkinsonian Disorders: A Case Series

description: <b><i>Background:</i></b> Deep brain stimulation (DBS) of the pedunculopontine nucleus (PPN) has been investigated for the treatment of levodopa-refractory gait dysfunction in parkinsonian disorders, with equivocal results so far. <b><i>Objectives:</i></b> To summarize the clinical outcomes of PPN-DBS-treated patients at our centre and elicit any patterns that may guide future research. <b><i>Materials and Methods:</i></b> Pre- and post-operative objective overall motor and gait subsection scores as well as patient-reported outcomes were recorded for 6 PPN-DBS-treated patients, 3 with Parkinson’s disease (PD), and 3 with progressive supranuclear palsy (PSP). Electrodes were implanted unilaterally in the first 3 patients and bilaterally in the latter 3, using an MRI-guided MRI-verified technique. Stimulation was initiated at 20–30 Hz and optimized in an iterative manner. <b><i>Results:</i></b> Unilaterally treated patients did not demonstrate significant improvements in gait questionnaires, UPDRS-III or PSPRS scores or their respective gait subsections. This contrasted with at least an initial response in bilaterally treated patients. Diurnal cycling of stimulation in a PD patient with habituation to the initial benefit reproduced substantial improvements in freezing of gait (FOG) 3 years post-operatively. Among the PSP patients, 1 with a parkinsonian subtype had a sustained improvement in FOG while another with Richardson syndrome (PSP-RS) did not benefit. <b><i>Conclusions:</i></b> PPN-DBS remains an investigational treatment for levodopa-refractory FOG. This series corroborates some previously reported findings: bilateral stimulation may be more effective than unilateral stimulation; the response in PSP patients may depend on the disease subtype; and diurnal cycling of stimulation to overcome habituation merits further investigation.
DOI: 10.6084/m9.figshare.13332533
title: Supplementary Material for: Explicit Diagnostic Criteria for Transient Ischemic Attacks Used in the Emergency Department Are Highly Sensitive and Specific

description: <b><i>Background:</i></b> Making a correct diagnosis of a transient ischemic attack (TIA) is prone to errors because numerous TIA mimics exist and there is a shortage of evidence-based diagnostic criteria for TIAs. In this study, we applied for the first time the recently proposed explicit diagnostic criteria for transient ischemic attacks (EDCT) to a group of patients presenting to the emergency department of a large German tertiary care hospital with a suspected TIA. The aim was to determine the sensitivity and specificity of the EDCT in its clinical application. <b><i>Methods:</i></b> A total of 128 patients consecutively presenting to the emergency department of the University Hospital of Lübeck, Germany, under the suspicion of a TIA were prospectively interviewed about their clinical symptoms at the time of presentation. The diagnosis resulting from applying the EDCT was compared to the diagnosis made independently by the senior physicians performing the usual diagnostic work-up (“gold standard”), allowing calculation of sensitivity and specificity of the EDCT. <b><i>Results:</i></b> EDCT achieved a sensitivity of 96% and a specificity of 88%. When adding the additional criterion F (“the symptoms may not be better explained by another medical or mental disorder”), specificity significantly increased to 98%. <b><i>Conclusions:</i></b> The data show that the EDCT in its modified version as proposed by us are a highly useful tool for clinicians. They display a high sensitivity and specificity to accurately diagnose TIAs in patients referred to the emergency department with a suspected TIA.
DOI: 10.6084/m9.figshare.13332533.v1
title: Supplementary Material for: Explicit Diagnostic Criteria for Transient Ischemic Attacks Used in the Emergency Department Are Highly Sensitive and Specific

description: <b><i>Background:</i></b> Making a correct diagnosis of a transient ischemic attack (TIA) is prone to errors because numerous TIA mimics exist and there is a shortage of evidence-based diagnostic criteria for TIAs. In this study, we applied for the first time the recently proposed explicit diagnostic criteria for transient ischemic attacks (EDCT) to a group of patients presenting to the emergency department of a large German tertiary care hospital with a suspected TIA. The aim was to determine the sensitivity and specificity of the EDCT in its clinical application. <b><i>Methods:</i></b> A total of 128 patients consecutively presenting to the emergency department of the University Hospital of Lübeck, Germany, under the suspicion of a TIA were prospectively interviewed about their clinical symptoms at the time of presentation. The diagnosis resulting from applying the EDCT was compared to the diagnosis made independently by the senior physicians performing the usual diagnostic work-up (“gold standard”), allowing calculation of sensitivity and specificity of the EDCT. <b><i>Results:</i></b> EDCT achieved a sensitivity of 96% and a specificity of 88%. When adding the additional criterion F (“the symptoms may not be better explained by another medical or mental disorder”), specificity significantly increased to 98%. <b><i>Conclusions:</i></b> The data show that the EDCT in its modified version as proposed by us are a highly useful tool for clinicians. They display a high sensitivity and specificity to accurately diagnose TIAs in patients referred to the emergency department with a suspected TIA.
DOI: 10.5517/ccdc.csd.cc1z6skj
title: CCDC 1823778: Experimental Crystal Structure Determination

description: Related Article: Andrii Fedko, Yurii Slyvka, Marian Mys'kiv|2018|Vopr.Khim.Khim.Tekh.|5|69|
DOI: 10.5517/ccdc.csd.cc1z6sqp
title: CCDC 1823783: Experimental Crystal Structure Determination

description: Related Article: Andrii Fedko, Yurii Slyvka, Marian Mys'kiv|2018|Vopr.Khim.Khim.Tekh.|5|69|
DOI: 10.5517/ccdc.csd.cc1z6srq
title: CCDC 1823784: Experimental Crystal Structure Determination

description: Related Article: Andrii Fedko, Yurii Slyvka, Marian Mys'kiv|2018|Vopr.Khim.Khim.Tekh.|5|69|
DOI: 10.15479/at:ista:8834
title: Enhancement of proximity induced superconductivity in planar Germanium

description: This data collection contains the transport data for figures presented in the supplementary material of "Enhancement of Proximity Induced Superconductivity in Planar Germanium" by K. Aggarwal, et. al. The measurements were done using Labber Software and the data is stored in the hdf5 file format. The files can be opened using either the Labber Log Browser (https://labber.org/overview/) or Labber Python API (http://labber.org/online-doc/api/LogFile.html).
DOI: 10.5281/zenodo.4305524
title: Cilia density and flow velocity affect alignment of motile cilia from brain cells

description: Here we store the supplementary Materials and Methods for the publication Cilia density and flow velocity affect alignment of motile cilia from brain cells. In the Supplementary methods we included additional information on the hydrodynamic simulations. Video1 and Video2 are videos referenced in the main text of the paper In the archive 'raw data and code.tar' , we provide raw images and codes to support the article.The complete dataset of raw images is more than 1 Tb. Here we are limited to 50Gb. The full dataset is available upon request.<br> <br> We choose to provide a full dataset of two culture at DIV 16, one treated with shear flow and a control without flow. For each of the two cultures, the videos with propelled particles are in the directory FL,<br> The bright field images without particles are stored in BF. Unfortunately we uploaded only few videos because of their large size. The results of the analysis of this dataset is reported in the directory analysis (available for each culture). Moreover we provide the code to analyse these data.<br> The analysis routine: Step 1: for each field of view (fov) getting the cilia beating direction from the FL images. This is done with PIV. The code is Step1_PIVanalysis.mat Step 2: for each fov getting ciliated cell position and CBF from the BF movies. Gather the cilia beating direction and cilia posion and frequency in a unique figure and matlab class (Res.mat). This is done in Step2_gatherResults.mat The results of these analysis are stored in the analysis folder for each culture. These routines are repeated for each experiment and results are then plotted to get trends. In the folder code4figures we report the code that we used to make the figures in the papers starting from a matlab file "all_results*.mat", where are gathered all the analysis. The code may improve in the future with more comments. please check Nicola's github page for the latest update. Please contact us for any problem. https://github.com/NicolaPellicciotta/Code4-Cilia-density-and-flow-velocity-affect-alignment-of-motile-cilia-from-brain-cells All the raw videos and code are in the archive.
DOI: 10.5281/zenodo.4039412
title: Cilia density and flow velocity affect alignment of motile cilia from brain cells

description: Here we store the supplementary Materials and Methods for the publication Cilia density and flow velocity affect alignment of motile cilia from brain cells. In the Supplementary methods we included additional information on the hydrodynamic simulations. Video1 and Video2 are videos referenced in the main text of the paper In the archive 'raw data and code.tar' , we provide raw images and codes to support the article.The complete dataset of raw images is more than 1 Tb. Here we are limited to 50Gb. The full dataset is available upon request.<br> <br> We choose to provide a full dataset of two culture at DIV 16, one treated with shear flow and a control without flow. For each of the two cultures, the videos with propelled particles are in the directory FL,<br> The bright field images without particles are stored in BF. Unfortunately we uploaded only few videos because of their large size. The results of the analysis of this dataset is reported in the directory analysis (available for each culture). Moreover we provide the code to analyse these data.<br> The analysis routine: Step 1: for each field of view (fov) getting the cilia beating direction from the FL images. This is done with PIV. The code is Step1_PIVanalysis.mat Step 2: for each fov getting ciliated cell position and CBF from the BF movies. Gather the cilia beating direction and cilia posion and frequency in a unique figure and matlab class (Res.mat). This is done in Step2_gatherResults.mat The results of these analysis are stored in the analysis folder for each culture. These routines are repeated for each experiment and results are then plotted to get trends. In the folder code4figures we report the code that we used to make the figures in the papers starting from a matlab file "all_results*.mat", where are gathered all the analysis. The code may improve in the future with more comments. please check Nicola's github page for the latest update. Please contact us for any problem. https://github.com/NicolaPellicciotta/Code4-Cilia-density-and-flow-velocity-affect-alignment-of-motile-cilia-from-brain-cells All the raw videos and code are in the archive.
DOI: 10.5281/zenodo.4305513
title: MMGC: supplementary data files

description: Additional data files to facilitate reproduction of the MMGC paper pipelines and figures.
DOI: 10.5281/zenodo.4305512
title: MMGC: supplementary data files

description: Additional data files to facilitate reproduction of the MMGC paper pipelines and figures.
DOI: 10.5519/qd.jfi09t6j
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.15468/q9bjpt
title: Vladelektra, an enigmatic new genus of killer fungus gnats (Diptera: Keroplatidae: incertae sedis) from mid-Cretaceous Burmese amber.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Evenhuis, Neal L. (2020): Vladelektra, an enigmatic new genus of killer fungus gnats (Diptera: Keroplatidae: incertae sedis) from mid-Cretaceous Burmese amber. Bishop Museum Occasional Papers 139: 1-9, DOI: http://doi.org/10.5281/zenodo.4305528