cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15493/saeon.fynbos.11b1118
title: 11B event rainfall June 2011 - February 2018

description: Event rainfall data collected by Davis Instruments tipping bucket gauge installed at 1.2m above ground at 400 masl in the Bosboukloof catchment of the Jonkershoek valley in the Western Cape of South Africa. Data recorded by a Pendant Event logger (UA-003-64, Onset, Massachusetts, U.S.A). Tipping bucket calibrated to 0.2 mm increments.
DOI: 10.15493/saeon.egagasini.10000015
title: The ASCA July 2018 (SEAmester III) raw oblique Bongo data for unit 2411

description: The Agulhas System Climate Array (ACSA) is a mooring array and is designed to provide long-term observations of the Agulhas Current`s volume, heat and salt transport and its variability from mesoscale (eddies), through seasonal to interannual timescales. The ASCA shelf and tall moorings extend 200 km offshore along decending TOPEX/Jason satellite ground track # 96, through the core of the Agulhas Current, with CPIES measurements extending the array to 300 km offshore of Port Elizabeth. The data was collected during the ASCA project have been obtained from various oceanographic instrumentation. This specific raw data was collected using an oblique Bongo net for unit 2411.
DOI: 10.15493/sarva.beeh.10000379
title: Uncorrected Vapour Pressure (kPa) June

description: Actual vapour pressure, i.e. the variable expressing atmospheric moisture content through the partial pressure exerted by the water vapour present in the atmosphere, to be a conservative climatic element which could be expressed adequately as a relatively consistent monthly value (cf. shaded box which follows). The monthly uncorrected vapour pressure, ed, at any given location in South Africa was subsequently held constant for that entire month and derivatives of ed, such as daily maximum and minimum relative humidity or daily vapour pressure deficit which depend on ratios of uncorrected actual to saturated vapour pressure, were then computed using daily maximum/minimum temperatures (Schulze and Maharaj, 2004) as inputs to daily saturated vapour pressure calculations, which were in turn used with that location`s monthly uncorrected actual vapour pressure.

The derivation of equations for monthly uncorrected actual vapour pressure, ed, over South Africa included, testing a number of hypotheses on factors affecting ed against observed data across a range of latitudes, distances from the ocean, climatic regimes and other factors; the selection, by iterative procedures, of suitable geographic and climatic variables against which to regress ed; the development of month-by-month multiple regression equations of uncorrected ed against altitude, latitude, longitude and continentality as geographical variables, and temperature range as a climatic variable, and their relative importance in the different seasons of the year. In each case reasons were given for the selection of a respective variable.
DOI: 10.15493/saeon.egagasini.05162022
title: The Petroleum and Gas Corporation of South Africa (PetroSA) Met-ocean data

description: A dataset containing time series data for various oceanographic and atmospheric variables for the period of 1 January 2017 to 28 August 2019 at a location offshore of the south coast of South Africa (34º 58.2 S, 022º 10.2E). Data were made available through the SAMREF data brokerage MoU. These data are raw and unprocessed.
DOI: 10.15493/sarva.csag.10000017
title: Rainfall days per month (> 2mm) for Near Future (2046-2065)

description: Model Run: Near future (2046 - 2065) (Near future (2046 - 2065)). The Self-Organizing Map Downscaling (SOMD) was developed at the Climate Systems Analysis Group (CSAG)[1], University of Cape Town. This is a leading empirical downscaled technique and provides meteorological station level response to global climate change forcing (See Hewitson and Crane (2006) for methodological details and Wilby et al. (2004) for a review of this and other statistical downscaling methodologies). Downscaling of a General Circulation Model (GCM) is accomplished by deriving the normative local response from the atmospheric state on a given day, as defined from historical observed data.  [1] http://www.csag.uct.ac.za/
DOI: 10.15493/sarva.beeh.10000326
title: Monthly Means Of Daily Minimum Temperature (C) February

description: Minimum (Night-Time) temperatures, there is abundant evidence for the climatic limitation of crop distributions to be described by minimum temperatures, from a perspective of crop survival (on Frost for tolerance levels of crops). Many subtropical crops may be killed at 5 degree Celsius already through chilling injury, even in the absence of frost (Chang, 1968). High minima increase respiration loss, thereby decreasing net photosynthesis.

Daily minimum temperature time series were derived from over 970 qualifying temperature stations` quality controlled daily records for the 50 year period 1950 - 1999. From these time series, 50 years of daily values of minimum temperatures were generated at each of 429 700 one arc minute (i.e. 1.7 km x 1.7 km) raster points covering South Africa, using regional and seasonal lapse rate and infilling/data extension techniques developed by Schulze and Maharaj (2004). Note that in the generation of daily minimum temperatures no account could be taken of cold air drainage into hollows or valleys, which can take place from surrounding higher-lying areas through radiative cooling during calm, stable clear night conditions. Reasons for this are provided in Schulze and Maharaj (2004). From these daily values, monthly means of daily minimum temperatures, as well as standard deviation of daily minimum temperatures for each month of the year, could be computed for purposes of mapping and production of statistics which are tabulated for Swaziland, Lesotho and for each of the nine provinces of the RSA. This approach to mapping minimum temperatures is thus fundamentally different to that used in the previous `South African Atlas of Agrohydrology and Climatology` (Schulze, 1997), in being much more physically based.
DOI: 10.15493/deff.10000004
title: Wave power exposure for South Africa

description: The spatial dataset is provided as a line shapefile and indicates the average annual and seasonal wave power (kW/m of wave crest). The original model outputs (The wave power atlas for South Africa, doi: 10.15493/DEFF.10000003) were written out at the 7m and 15m bathymetry contour lines using the numerical code, Simulating WAves in the Nearshore (SWAN). Averages are based on stationary, coastal, spectral wave model computations. The simulation period is at a three-hourly resolution spanning from 1997 until 2013. Saturated, wind wave computations and swell computations were executed separately. The combined product presented here were thus the result of total wave energy addition.  

The wave power averages are presented here in terms of coastal wave exposure classifications. Through this classification the South African coastline can thus readily be understood in terms of total and seasonal experienced wave exposure. These range from fully sheltered to fully exposed and is based on widely accepted literature. Tidal fluctuations were not taken into account.
DOI: 10.15493/sarva.dws.10000007
title: River profile classification Catchment C

description: Longitudinal slope profiles derived for all 1:500 000 rivers of South Africa, including cross-border catchments extending into neighbouring countries. River main stems are identified by a unique reach number (REACHNUM) within each primary catchment.
DOI: 10.15493/sarva.dws.10000022
title: River profile classification Catchment V

description: Longitudinal slope profiles derived for all 1:500 000 rivers of South Africa, including cross-border catchments extending into neighbouring countries. River main stems are identified by a unique reach number (REACHNUM) within each primary catchment.
DOI: 10.15493/sarva.saws.10000092
title: Root Mean Square Difference between the nine ensemble member change anomalies of the seasonal total rainfall for the 90% percentile for 2036 - 2065 relative to 1976-2005, for the SON season, under the RCP 4.5 pathway

description: Root Mean Square Difference for seasonal (SON) rainfall (mm per month) change from the 90% percentile projected for 2036-2065, relative to present (1976 - 2005), under the RCP 4.5 pathway for the southern African region. To generate the image, nine coarse General Circulation Models (GCM) are downscaled to a finer spatial resolution (0.44°x 0.44°) using the Rossby Centre regional model (RCA4) forcing its lateral boundaries. The model simulated daily rainfall averages, which are used to generate projections of seasonal change. The projections are generated using the medium to low (RCP4.5) pathway which associates CO2 concentrations of approximately 560ppm by the year 2100. The associated RMSD it calculated and shows the uncertainty range of the projected model simulated residual values, and gives a relative perspective of spatial areas associated with higher and lower projection uncertainties.
DOI: 10.25345/c5891221p
title: MassIVE MSV000093083 - PHF6 cooperates with SWI/SNF complexes to facilitate transcriptional progression
title: Genes encoding subunits of SWI/SNF (BAF) chromatin remodeling complexes are mutated in nearly 25% of cancers. To gain insight into the mechanisms by which SWI/SNF mutations drive cancer, we contributed ten rhabdoid tumor (RT) cell lines mutant for SWI/SNF subunit SMARCB1 to a genome-scale CRISPR Cas9 depletion screen performed across 896 cell lines. We identify PHF6 as specifically essential for RT cell survival and demonstrate that dependency on Phf6 extends to Smarcb1-deficient cancers in vivo. As mutations in either SWI/SNF or PHF6 can cause the neurodevelopmental disorder Coffin-Siris syndrome, our findings of a dependency suggest a previously unrecognized functional link. We demonstrate that PHF6 co-localizes with SWI/SNF complexes at promoters, where it is essential for maintenance of an active chromatin state. We show that in the absence of SMARCB1, PHF6 loss disrupts the recruitment and stability of residual SWI/SNF complex members, collectively resulting in the loss of active chromatin at promoters and stalling of RNA Polymerase II progression. Our work establishes a mechanistic basis for the shared syndromic features of SWI/SNF and PHF6 mutations in CSS and the basis for selective dependency on PHF6 in SMARCB1-mutant cancers.
DOI: 10.15493/sarva.csag.10000243
title: Rainfall days per month for Current Climate (1950-1999)

description: Model Run: Control - Current Climate (Observed/current climate as modelled by climate model). The Self-Organizing Map Downscaling (SOMD) was developed at the Climate Systems Analysis Group (CSAG)[1], University of Cape Town. This is a leading empirical downscaled technique and provides meteorological station level response to global climate change forcing (See Hewitson and Crane (2006) for methodological details and Wilby et al. (2004) for a review of this and other statistical downscaling methodologies). Downscaling of a General Circulation Model (GCM) is accomplished by deriving the normative local response from the atmospheric state on a given day, as defined from historical observed data.  [1] http://www.csag.uct.ac.za/
DOI: 10.15493/sarva.saws.10000090
title: Root Mean Square Difference between the nine ensemble member change anomalies of the seasonal total rainfall for the 10% percentile for 2036 - 2065 relative to 1976-2005, for the JJA season, under the RCP 4.5 pathway

description: Root Mean Square Difference for seasonal (JJA) rainfall (mm per month) change from the 10% percentile projected for 2036-2065, relative to present (1976 - 2005), under the RCP 4.5 pathway for the southern African region. To generate the image, nine coarse General Circulation Models (GCM) are downscaled to a finer spatial resolution (0.44°x 0.44°) using the Rossby Centre regional model (RCA4) forcing its lateral boundaries. The model simulated daily rainfall averages, which are used to generate projections of seasonal change. The projections are generated using the medium to low (RCP4.5) pathway which associates CO2 concentrations of approximately 560ppm by the year 2100. The associated RMSD it calculated and shows the uncertainty range of the projected model simulated residual values, and gives a relative perspective of spatial areas associated with higher and lower projection uncertainties.
DOI: 10.15493/sarva.beeh.10000138
title: Monthly Means Of Daily Average Relative Humidity (%) April

description: Daily minimum and maximum relative humidity is necessary as relative humidity, defined for practical purposes as the ratio of actual to saturated vapour pressure, expressed as a percentage generally varies considerably in the course of a day because, despite actual vapour pressure, ed, remaining relatively constant, saturated vapour pressure, ea, varies curvilinearly with temperature. The minimum RH of a day is thus experienced during the hottest part of the day when ea is high and the ratio of ed : ea is therefore small. Conversely, the maximum RH of a day is experienced around sunrise when temperatures are low, thus ea is low and the ratio of ed : ea therefore approaches unity.

In computations of daily RHmin and RHmax, the uncorrected actual vapour pressure, ed , is assumed not to change significantly in the course of a day. Because uncorrected ed at any specific location has been shown to be predictable over South Africa on a month-by-month basis with a high degree of confidence when using predominantly geographical factors in multiple regression equations for each month the ed at any location is therefore held at a relatively constant value for any given month of the year, varying only slightly on a day-by-day basis within that month because temperature range is a variable in the regression equation. However, at that specific location the saturated vapour pressure, ea , can vary considerably from one day to the next, as well as within a given day between morning and midday, because it is related to temperature. Therefore, RHmin and RHmax can range considerably within a given day and vary markedly from one day to the next.
DOI: 10.15493/sarva.beeh.10000375
title: Uncorrected Vapour Pressure (kPa) February

description: Actual vapour pressure, i.e. the variable expressing atmospheric moisture content through the partial pressure exerted by the water vapour present in the atmosphere, to be a conservative climatic element which could be expressed adequately as a relatively consistent monthly value (cf. shaded box which follows). The monthly uncorrected vapour pressure, ed, at any given location in South Africa was subsequently held constant for that entire month and derivatives of ed, such as daily maximum and minimum relative humidity or daily vapour pressure deficit which depend on ratios of uncorrected actual to saturated vapour pressure, were then computed using daily maximum/minimum temperatures (Schulze and Maharaj, 2004) as inputs to daily saturated vapour pressure calculations, which were in turn used with that location`s monthly uncorrected actual vapour pressure.

The derivation of equations for monthly uncorrected actual vapour pressure, ed, over South Africa included, testing a number of hypotheses on factors affecting ed against observed data across a range of latitudes, distances from the ocean, climatic regimes and other factors; the selection, by iterative procedures, of suitable geographic and climatic variables against which to regress ed; the development of month-by-month multiple regression equations of uncorrected ed against altitude, latitude, longitude and continentality as geographical variables, and temperature range as a climatic variable, and their relative importance in the different seasons of the year. In each case reasons were given for the selection of a respective variable.
DOI: 10.15493/sarva.csag.10000136
title: Number of days for Minimum Temperature under 10th percentile for Far Future (2080 - 2100)

description: Model Run: Far future (2080 - 2100) (Far future (2080 - 2100)). The Self-Organizing Map Downscaling (SOMD) was developed at the Climate Systems Analysis Group (CSAG)[1], University of Cape Town. This is a leading empirical downscaled technique and provides meteorological station level response to global climate change forcing (See Hewitson and Crane (2006) for methodological details and Wilby et al. (2004) for a review of this and other statistical downscaling methodologies). Downscaling of a General Circulation Model (GCM) is accomplished by deriving the normative local response from the atmospheric state on a given day, as defined from historical observed data.  [1] http://www.csag.uct.ac.za/
DOI: 10.15493/sarva.saws.10000152
title: Root Mean Square Difference between the nine ensemble member change anomalies of the seasonal mean near-surface (2m) temperature for the 90% percentile for 2036 - 2065 relative to 1976-2005, for the MAM season, under the RCP 8.5 pathway

description: Root Mean Square Difference for seasonal (MAM) mean near-surface (2m) temperature (°C) change from the 90% percentile projected for 2036-2065, relative to present (1976 - 2005), under the RCP 8.5 pathway for the southern African region. To generate the image, nine coarse General Circulation Models (GCM) are downscaled to a finer spatial resolution (0.44°x 0.44°) using the Rossby Centre regional model (RCA4) forcing its lateral boundaries. The model simulated daily temperature averages, which are used to generate projections of seasonal change. The projections are generated using the high (RCP8.5) pathway which associates CO2 concentrations of approximately 950ppm by the year 2100. The associated RMSD it calculated and shows the uncertainty range of the projected model simulated residual values, and gives a relative perspective of spatial areas associated with higher and lower projection uncertainties.
DOI: 10.15493/sarva.saws.10000078
title: Root Mean Square Difference between the nine ensemble member change anomalies of the seasonal total rainfall for the 10% percentile for 2036 - 2065 relative to 1976-2005, for the DJF season, under the RCP 4.5 pathway

description: Root Mean Square Difference for seasonal (DJF) rainfall (mm per month) change from the 10% percentile projected for 2036-2065, relative to present (1976 - 2005), under the RCP 4.5 pathway for the southern African region. To generate the image, nine coarse General Circulation Models (GCM) are downscaled to a finer spatial resolution (0.44°x 0.44°) using the Rossby Centre regional model (RCA4) forcing its lateral boundaries. The model simulated daily rainfall averages, which are used to generate projections of seasonal change. The projections are generated using the medium to low (RCP4.5) pathway which associates CO2 concentrations of approximately 560ppm by the year 2100. The associated RMSD it calculated and shows the uncertainty range of the projected model simulated residual values, and gives a relative perspective of spatial areas associated with higher and lower projection uncertainties.
DOI: 10.15493/sarva.csag.10000245
title: Rainfall days per month (> 2mm) for Current Climate (1950-1999)

description: Model Run: Control - Current Climate (Observed/current climate as modelled by climate model). The Self-Organizing Map Downscaling (SOMD) was developed at the Climate Systems Analysis Group (CSAG)[1], University of Cape Town. This is a leading empirical downscaled technique and provides meteorological station level response to global climate change forcing (See Hewitson and Crane (2006) for methodological details and Wilby et al. (2004) for a review of this and other statistical downscaling methodologies). Downscaling of a General Circulation Model (GCM) is accomplished by deriving the normative local response from the atmospheric state on a given day, as defined from historical observed data.  [1] http://www.csag.uct.ac.za/
DOI: 10.15493/bea.data.10000010
title: Pinus elliottii growth areas allocated to mesozones

description: * The dataset shows climatically optimum growth areas of Pinus elliottii and those areas deemed to be at moderate risk for successful growth of this species. Large tracts along the coastal and inland areas of the north-eastern Eastern Cape Province and KwaZulu-Natal, as well as the western half of Swaziland and significant parts of Mpumalanga, are shown to be climatically suitable for Pinus elliottii production. * P. elliottii growth areas were derived from Schulze R.E. and Maharaj M. (2007) and then allocated to mesozones by combining with a base mesozone layer obtained from the CSIR Geospatial Analysis Platform (GAP).
DOI: 10.15493/sarva.beeh.10000095
title: Heat Units (Standard Deviation) - Annual

description: The concept of the heat unit (or degree day), known since the mid-18th century already, revolves around the development of a plants or organism`s being dependent upon the accumulated heat to which it was subjected during its lifetime, or else during a certain developmental stage. This measure of accumulated heat is known as physiological time. In general it holds that the lower the temperature, the slower the rate of growth and development of plants and invertebrate animals and the amount of heat required to complete a given organism`s development does not vary. Physiological time is usually expressed and approximated in units of degree days, also popularly called heat units, where these are an accumulation of mean temperatures above a certain lower threshold value and below an upper developmental threshold (above which growth is considered to remain static or even decline), over a period of time. The degree day concept is not without its limitations. These include that, a linear relationship is assumed between growth and temperature, threshold temperatures may change during the life cycle of a crop or Pest, temperatures exceeding the upper threshold may, in fact, have a detrimental/negative effect on development.
Derivation over South Africa of heat units were done by calculating degree days for the daily temperature fluctuations that occur in nature. These range from degree hours, sine and triangular methods based on hourly temperatures, as well as so-called cut-off methods when the upper threshold of temperature is reached. To estimate heat units (HUs) over South Africa, the 50 year time series of daily maximum and minimum temperatures (Tmxd, Tmnd), generated at each of the 429 700 raster points covering the area at 1` x 1` latitude/longitude, was used (Schulze and Maharaj, 2004). The generation of this time series is described in Section 2a. HUs was computed for each day for a threshold temperature of 10 degree Celsius, i.e. HU = [(Tmxd + Tmnd) / 2 - 10] for HU ≥ 0.0 This method is a considerable advance on the computation of HUs in the previous version of this Atlas (Schulze, 1997), in which HUs were calculated from regression derived monthly means of Tmx and Tmn. From these daily values, monthly as well as seasonal and annual HUs and their standard deviations, could be calculated and mapped.
DOI: 10.15493/sarva.csag.10000272
title: Number of days for Minimum Temperature under 10th percentile for Near Future (2046-2065)

description: Model Run: Near future (2046 - 2065) (Near future (2046 - 2065)). The Self-Organizing Map Downscaling (SOMD) was developed at the Climate Systems Analysis Group (CSAG)[1], University of Cape Town. This is a leading empirical downscaled technique and provides meteorological station level response to global climate change forcing (See Hewitson and Crane (2006) for methodological details and Wilby et al. (2004) for a review of this and other statistical downscaling methodologies). Downscaling of a General Circulation Model (GCM) is accomplished by deriving the normative local response from the atmospheric state on a given day, as defined from historical observed data.  [1] http://www.csag.uct.ac.za/