cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zprb2w
title: Occurrence Download

description: A dataset containing 2218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY 4.0, CC0 1.0)",
 "TaxonKey is Meles meles (Linnaeus, 1758)"
 ]
}

 The dataset includes 2218 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004993-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qs274q
title: Occurrence Download

description: A dataset containing 346 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Chelostoma distinctum (Stoeckhert, 1929)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 30, 46 30, 46 68, -26 68, -26 30))"
 ]
}

 The dataset includes 346 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004992-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bpr8sc
title: Occurrence Download

description: A dataset containing 206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-123.00131 49.06426,-122.98942 49.06624,-122.98362 49.06721,-122.97657 49.07671,-122.97559 49.09145,-122.97885 49.10438,-122.98425 49.11167,-122.99197 49.11668,-122.99869 49.11815,-123.01065 49.11586,-123.02425 49.10783,-123.03096 49.09342,-123.03113 49.07753,-123.02441 49.06737,-123.013 49.06281,-123.00131 49.06426))",
 "IucnRedListCategory is one of (EN, CR, VU)"
 ]
}

 The dataset includes 206 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004994-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3qb8g
title: Occurrence Download

description: A dataset containing 2869 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Chelostoma florisomne (Linnaeus, 1758)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 30, 46 30, 46 68, -26 68, -26 30))"
 ]
}

 The dataset includes 2869 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004995-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00008860
title: Pretreatment lymphocyte counts and free light chain ratio predict the efficacy of elotuzumab against relapsed/ refractory multiple myeloma

description: Several new drugs has been introduced in the treatment of multiple myeloma (MM) and the prognosis of MM patients improved dramatically. Among the new drugs, we focused on elotuzumab. Elotuzumab have showed a high response rate in relapsed MM patients. However, the durable efficacy was achieved in only one fourth of the patients. Because non-responders might benefit from alternative treatments, it is important to select suitable patients for elotuzumab beforehand. Here, we are trying to identify the characteristics of patients likely to exhibit a durable response to elotuzumab before the treatment (so called "biomarkers"). In the previous study, we have established simple models to predict the response of elotuzumab. In this study, we will attempt to identify the biomarkers of patients for elotuzumab by focusing on the immunological mechanism of elotuzumab. Elotuzumab is not a cytotoxic drug but rather an immunotherapeutic that works with the help of host immune cells. Therefore, it is important to take into account the host’s immune status. We hypothesized that the balance between the tumor burden and the immune status of the host before treatment may determine the efficacy of elotuzumab treatment. We are planning to use univariate analysis and multivariate analysis for progression free surivival to identify the factors which could be related to the response against elotuzumab treatment and establish simple predicting models. If we could identify the predicting models, it would contribute greatly to the MM patients care.
DOI: 10.6084/m9.figshare.27198549
title: Script and datasets for Mercier et al.

description: Script and datasets used to test hypotheses in Mercier et al
DOI: 10.15468/dl.cfdzmq
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Chelostoma grande (Nylander, 1852)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 30, 46 30, 46 68, -26 68, -26 30))"
 ]
}

 The dataset includes 126 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004996-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qsayw
title: Occurrence Download

description: A dataset containing 1999 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Chelostoma rapunculi (Lepeletier, 1841)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 30, 46 30, 46 68, -26 68, -26 30))"
 ]
}

 The dataset includes 1999 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004997-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghmyh9
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Coelioxys afra Lepeletier, 1841",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 30, 46 30, 46 68, -26 68, -26 30))"
 ]
}

 The dataset includes 212 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004998-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10952514
title: PKPD data from Pfizer published paper

description: Pfizer published paper with supplementary material with compound dataset of PKPD values
DOI: 10.5281/zenodo.10952515
title: PKPD data from Pfizer published paper

description: Pfizer published paper with supplementary material with compound dataset of PKPD values
DOI: 10.5281/zenodo.11518778
title: pKa dataset. Molecule are coded by ECFP4 fingeprint singularly exploited

description: This dataset has been used for ML modelling (see  Fraunhofer-ITMP/pKa_model_shiny: Repository of the FhG-ITMP ADME models for pKa (github.com))
DOI: 10.5281/zenodo.11518779
title: pKa dataset. Molecule are coded by ECFP4 fingeprint singularly exploited

description: This dataset has been used for ML modelling (see  Fraunhofer-ITMP/pKa_model_shiny: Repository of the FhG-ITMP ADME models for pKa (github.com))
DOI: 10.5281/zenodo.13909978
title: Example BAM file

description: This BAM file is intended for use in software examples, when users don't have access to other data.

Snyder et. al (2016) made the the original BAM file publically available. It was downloaded from https://kircherlab.bihealth.org/download/cfDNA/

The following steps were performed:



We filtered the reads to only keep fragments with insert sizes in [100bp, 220bp].

We downsampled to keep only 10% of the fragments. The file is likely only useful for seeing the software run.

We remapped the file to hg38.


[1] Snyder MW, Kircher M, Hill AJ, Daza RM, Shendure J. Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin. Cell. 2016 Jan 14;164(1-2):57-68. doi: 10.1016/j.cell.2015.11.050. PubMed PMID: 26771485
DOI: 10.5281/zenodo.13909979
title: Example BAM file

description: This BAM file is intended for use in software examples, when users don't have access to other data.

Snyder et. al (2016) made the the original BAM file publically available. It was downloaded from https://kircherlab.bihealth.org/download/cfDNA/

The following steps were performed:



We filtered the reads to only keep fragments with insert sizes in [100bp, 220bp].

We downsampled to keep only 10% of the fragments. The file is likely only useful for seeing the software run.

We remapped the file to hg38.


[1] Snyder MW, Kircher M, Hill AJ, Daza RM, Shendure J. Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin. Cell. 2016 Jan 14;164(1-2):57-68. doi: 10.1016/j.cell.2015.11.050. PubMed PMID: 26771485
DOI: 10.5281/zenodo.10952530
title: pKa data for 5000+ compounds from large pharma companies

description: Three dataset with pKa for 5000+ drug discovery compounds
DOI: 10.5281/zenodo.10952531
title: pKa data for 5000+ compounds from large pharma companies

description: Three dataset with pKa for 5000+ drug discovery compounds
DOI: 10.5066/p136ghaz
title: On Comet Origins - 19610116

description: This is a paper about the properties of comets and a theory of how they might come about.
DOI: 10.5281/zenodo.13909753
title: No evidence that visual impulses enhance the readout of retrieved long-term memory contents from EEG activity
title: MemPing

description: This is the EEG and behavioral data for the long-term memory ping study by Sander van Bree, Abbie Sarah Mackenzie, and Maria Wimber.

Paper title: No evidence that visual impulses enhance the readout of retrieved long-term memory contents from EEG activity

The behavioral data is named "behav_res_pp", which is the output of script 1 (s0_extractdata.m) on Github. The EEG data is named "pp_reorder" and it is the output of script 5 (s5_correctdata.m); i.e., it is both preprocessed and correctly formatted for the main analyses.

Move the behavioral data to folder /data/behav_data/ and the EEG data to folder /data/eeg_data/

For the analysis scripts and more information, check Github: https://github.com/sandervanbree/MemPing
DOI: 10.5281/zenodo.13909754
title: No evidence that visual impulses enhance the readout of retrieved long-term memory contents from EEG activity
title: MemPing

description: This is the EEG and behavioral data for the long-term memory ping study by Sander van Bree, Abbie Sarah Mackenzie, and Maria Wimber.

Paper title: No evidence that visual impulses enhance the readout of retrieved long-term memory contents from EEG activity

The behavioral data is named "behav_res_pp", which is the output of script 1 (s0_extractdata.m) on Github. The EEG data is named "pp_reorder" and it is the output of script 5 (s5_correctdata.m); i.e., it is both preprocessed and correctly formatted for the main analyses.

Move the behavioral data to folder /data/behav_data/ and the EEG data to folder /data/eeg_data/

For the analysis scripts and more information, check Github: https://github.com/sandervanbree/MemPing
DOI: 10.7275/8hs8-8p30
title: The model elementary training sequence : a personal growth program for student teachers.
DOI: 10.7275/9cf7-sv41
title: Sustainable community development in Nepal : voices from the bottom-up.
DOI: 10.15468/dl.e9pw5q
title: Occurrence Download

description: A dataset containing 2072934 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Passerculus sandwichensis (J.F.Gmelin, 1789))",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2072934 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004981-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7275/ab63-q209
title: Circumstellar gas and dust emission and mass loss from evolved stars.
DOI: 10.15468/dl.n6rt4m
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Coelioxys conoideus (Illiger, 1806)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 30, 46 30, 46 68, -26 68, -26 30))"
 ]
}

 The dataset includes 320 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004999-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6s5xgn
title: Occurrence Download

description: A dataset containing 7126 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The main forest species encountered in southern and central Benin, west Africa"
 ]
}

 The dataset includes 7126 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005000-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/tpfefp
title: Flora del Parque Solar Bayasol

description: Este recurso contiene un inventario detallado de la flora presente en el proyecto fotovoltaico Bayasol, en República Dominicana. El conjunto de datos incluye especies nativas, endémicas y naturalizadas, con información sobre su distribución, estado de conservación, y usos locales. Este inventario forma parte de un esfuerzo de conservación y manejo sostenible de la biodiversidad en los parques solares.
DOI: 10.15468/dl.gkr8jz
title: Occurrence Download

description: A dataset containing 901331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-08-14",
 "EventDate is less than or equal to 2024-09-13",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 901331 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004970-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7931/t2fr-f744
title: Honeybee impacts on insect communities
DOI: 10.15468/dl.7vn94x
title: Occurrence Download

description: A dataset listing the 97 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "Geometry POLYGON((-67.89089 -29.13657,-67.64174 -29.1418,-67.64348 -28.91181,-67.89089 -28.90659,-67.89089 -29.13657))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2003-2024"
 ]
}

 The dataset's 97 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004988-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tjpbg
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lycorma delicatula (White, 1845)"
 ]
}

 The dataset's 2 records were derived from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004987-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwgr6d
title: Occurrence Download

description: A dataset containing 2450558547 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)"
 ]
}

 The dataset includes 2450558547 records from 58791 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004929-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6rdqf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pediacus kurosawai Sasaji, 1983",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0313001-210914110416597/datasets/export for details.
DOI: 10.15468/dl.kexecm
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetramicra schoenina Benth. & Hook.f., 1883"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011395-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rzyzwx
title: Occurrence Download

description: A dataset containing 78622 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((39.60041 49.73425,40.04042 50.12445,40.05628 50.69811,39.8628 51.12708,38.80375 51.96714,37.25693 52.05529,36.16843 51.48809,35.16586 51.04,35.25179 50.47828,35.91063 50.22239,36.99913 50.18572,37.45745 50.27734,37.94441 49.8729,38.46002 49.83596,39.0902 49.76201,39.60041 49.73425))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 78622 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0385782-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvgbfd
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetramicra ekmanii Mansf."
 ]
}

 The dataset includes 59 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011390-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xxfqk
title: Occurrence Download

description: A dataset containing 800 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Micrandra sprucei (Müll.Arg.) R.E.Schult."
 ]
}

 The dataset includes 800 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021334-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tk5ya8
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetramicra tenera (A.Rich.) Griseb. ex Benth."
 ]
}

 The dataset includes 87 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011398-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vw2f4t
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Marine algal (seaweed) flora of Faial Island, Azores [DEPRECATED]"
 ]
}

 The dataset includes 95 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0272851-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnqmgr
title: Occurrence Download

description: A dataset listing the 49 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "Continent is South America",
 "CoordinateUncertaintyInMeters 0.0-1169.0",
 "Country is Colombia",
 "GadmGid is COL.28.29_2",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 49 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011389-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vza58u
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Engraulisoma taeniatum Castro, 1981)"
 ]
}

 The dataset includes 158 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014376-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pgrep
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ctenotus delli Storr, 1974"
 ]
}

 The dataset includes 71 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293815-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8hfud
title: Occurrence Download

description: A dataset containing 8250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Agelasticus cyanopus (Vieillot, 1819)"
 ]
}

 The dataset includes 8250 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014375-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.