cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7925/drs1.ucdlib_31923
title: 8 Hawkins Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork & timber cladding structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31926
title: 8 Hawkins Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31932
title: 2 Johnson's Place, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 4064
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31938
title: 4 Johnson's Place, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Rendered facade structure, 2 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.1154f/1
title: Plot Composition

description: Plant cover visually estimated in percentage in the plots of the transplant experiment and associated soil water content in % of dry soil mass.
DOI: 10.5061/dryad.1154f/2
title: Saccone-JEcol-2014-0186-species-names

description: The complete species names of species and their abbreviated names (used as column names of the Plot composition file)
DOI: 10.5061/dryad.27sk4/1
title: Database Patients’ subjective assessment of the duration of cataract surgery
DOI: 10.5061/dryad.33982/1
title: Phylogenetic tree pigs

description: Neighbor-joining phylogenetic tree based a PLINK distance matrix for 2288220 markers in 40 pigs and wild boar from Europe and Asia.
DOI: 10.5061/dryad.44gk7/1
title: pec_carlton_data

description: Files included: (1) pec_carlton_biomass_allocation_data.csv, (2) pec_carlton_environment_data.csv, (3) pec_carlton_germination_data.csv, (4) pec_carlton_growth_data.csv, (5) pec_carlton_non_natives_data.csv, (6) pec_carlton_scatterplot_abundance_data.csv
DOI: 10.5061/dryad.46195/1
title: hymenoptera-uce-probes.fasta

description: FASTA file containing target enrichment bait sequences for UCE loci in hymenoptera.
DOI: 10.5061/dryad.46195/2
title: in-silico-NOTES

description: NOTES describing the pipeline steps used to analyze the in silico data.
DOI: 10.5061/dryad.46195/3
title: in-silico-contigs.tar.gz

description: UCE contigs sliced from available hymenopteran genomes.
DOI: 10.5061/dryad.46195/4
title: in-silico-uce-probes-to-contigs.lastz.tar.gz

description: LASTZ files showing mapping of UCE probes onto in silico genome slices AND probe.matches.sqlite database.
DOI: 10.5061/dryad.46195/5
title: in-silico-taxon-set-alignment-data.tar.gz

description: Archive file containing nested directories of in-silico alignment and analysis data.  See overall README or file-specific README.
DOI: 10.5061/dryad.4t5rt/1
title: SR and MG data- There is no such thing...

description: Spreadsheet containing all data used to conduct the analyses reported in the manuscript, organised in sections each corresponding to one analysis
DOI: 10.5061/dryad.59jp0/4
title: Online appendix 2

description: List of the journals in which new species were delineated. Editorial policies on including formal taxonomic descriptions to articles and impact factors were investigated before 2005, between 2005-2010, and 2011-2014. Y=Yes, N=No, NA=Not Available and IF=Impact Factor.
DOI: 10.5061/dryad.5fm82/1
title: Assembled GG1 transcripts

description: We assembled quality filtered and trimmed 454 reads with Newbler for the GG1 strain.
DOI: 10.5061/dryad.617bk/1
title: Lemaitre et al. dryad - Data

description: Dataframe used for main analysis in the paper.
DOI: 10.5061/dryad.71ds5/1
title: datafile 1

description: Basic datafile, with counts per sex and area, including the summary of benthic biomass
DOI: 10.5061/dryad.71ds5/2
title: datafile 2

description: Datafile of the abdominal profile scores of male and female bar-tailed godwits per area. The costs of wintering are also included
DOI: 10.5061/dryad.71ds5/3
title: datafile 3

description: Summary of calculated costs of wintering and flying to and from their different wintering sites, separated per sex
DOI: 10.5061/dryad.bj506/2
title: CAT_sequence_all_indivdiuals
DOI: 10.5061/dryad.bj506/3
title: ESD_sequence_all_indivdiuals
DOI: 10.5061/dryad.bj506/4
title: FGG_sequence_all_individuals
DOI: 10.5061/dryad.bj506/5
title: GBA_sequence_all_individuals
DOI: 10.5061/dryad.bj506/6
title: LAC_sequence_all_individuals
DOI: 10.5061/dryad.bj506/7
title: PLP_sequence_all_individuals
DOI: 10.5061/dryad.bj506/8
title: PLP_sequence_all_individuals
DOI: 10.5061/dryad.bq280/1
title: README

description: Description of the data package
DOI: 10.5061/dryad.bq280/2
title: reproductive_schedule

description: Data associated with the MS.  See README file.
DOI: 10.5061/dryad.h6231/1
title: README

description: Description of the contents of the data package:  1. One text file, named "Population_fitness.txt" 2. One text file, named "Male_fitness.txt" 3. One text file, named "Hermaphrodite_fitness.txt"
DOI: 10.5061/dryad.h6231/2
title: population_fitness
DOI: 10.5061/dryad.h6231/3
title: male_fitness
DOI: 10.5061/dryad.h6231/4
title: hermaphrodite_fitness
DOI: 10.5061/dryad.j015n/12
title: fish-partitioned-phylip-file-for-raxml.phylip.gz

description: Partitioned PHYLIP file for use with RAXML.
DOI: 10.5061/dryad.jv1vf/1
title: Rohdaten_Bereitstellung

description: Measured mechanical data (Polytec Software). Polytec Scan Viewer may be used to visualize scanning vibrometer (.svd) files - available for download at   Questions about data may be directed to Dr. Manuela Nowotny  at
DOI: 10.5061/dryad.mt688/1
title: Boldness behavioral data

description: Boldness scores for S.dumicola individuals tested in groups of differing familiarity levels.
DOI: 10.5061/dryad.n13hn/4
title: Remotely sensed reflectance, vegetation indices and topographic data (French Site)
DOI: 10.5061/dryad.n13hn/5
title: Plant trait data Swiss site
DOI: 10.5061/dryad.n13hn/6
title: Plant trait data French site
DOI: 10.5061/dryad.n13hn/7
title: Phylogenetic data Swiss site
DOI: 10.5061/dryad.n13hn/8
title: Phylogenetic data French site
DOI: 10.5061/dryad.n420r/1
title: Craugastor_augusti_SNP_data

description: Data included in zipfile: (1) STACKS commands used to process and assemble RADtags, (2) 0.20 missing biallelic data matrix [.stru format], (3) 0.25 missing biallelic data matrix [.stru format], (4) 0.50 missing biallelic data matrix [.stru format], (5) 0.10 missing fixed data matrix [.phy format], (6) 0.25 missing fixed data matrix [.phy format], and (7) 0.50 missing fixed data matrix [.phy format]
DOI: 10.5061/dryad.r717q/7
title: Raw Data

description: Raw data included one DNA sequence alignment, two maximum clade credibility trees, and two chronograms for analyses
DOI: 10.5061/dryad.rc628/1
title: all nuc.TXT

description: BEAST input file:GHR nuclear DNA sequences
DOI: 10.5061/dryad.rc638/1
title: Distance Matrices of hierarchical cluster analyses

description: Distance matrices used for the hierarchical cluster analyses for the analysis using only the selected 15 genes (for genes and specimens) and for teh analysis including all 19 candidate genes (also for genes and specimens).
DOI: 10.5061/dryad.rc638/2
title: Linear morphometric measurements

description: Linear morphometric measurements of the 10 recorded variables for each of the 33 individuals, plus information on the timepoint, diet group and standard length of each.
DOI: 10.5061/dryad.rc638/3
title: Normalized gene expression values

description: Standardized and normalized gene expression values of the 19 candidate genes and the houskeeping genes for each individual, including timepoint and diet information.
DOI: 10.5061/dryad.sb68v/1
title: AFLP data

description: The file AFLP data.txt includes the binary matrix of AFLP band presence (1) – absence (0) for 451 AFLP-markers and 422 individuals of Liparis loeselii sampled in 38 populations. The matrix also include the spatial coordinates of each sampled population, given in the two last columns. The markers are numbered M1 to M451. The description of each marker (size in base pairs, primer combination) is given in the file readme.txt.
DOI: 10.5061/dryad.t4624/10
title: Average Nucleotide Identity score 9 GENOMES

description: This value for a genome was calculated in comparison with the another genome using Kostanditis ANI script. Then the matrix was generated, followed by its dendrogram construction.
DOI: 10.5061/dryad.t4624/7
title: 16S rRNA gene sequence of 9 Sphingobium

description: Aligned sequences of 16S rRNA gene of nine Sphingobium strains included in this comparative study
DOI: 10.5061/dryad.t4624/8
title: single copy genes

description: Single copy genes i.e., (dnaA, frr, gyrB, infB, mnmA, nusA, pheS, rplB, rplC, rplM, rplS, rpoA, rpsB, rpsC, rpsH, rpsI, rpsJ, rpsS, trmD, tef, ychF, alaS, rplE, uvrC, lepA, rplI, rplP and rplD are retrieved from these genomes, followed by their concatenation and alignment.
DOI: 10.5061/dryad.t4624/9
title: tetraallcorelationfinal

description: Tetra scores were calculated for these nine Sphingobium genomes and these values were used to generate the matrix followed by its dendrogram construction.
DOI: 10.5061/dryad.t938n/4
title: R Code for Phase 2

description: R code for Phase 2 to analyze changes in offspring quality as a function of parental age.
DOI: 10.5061/dryad.t938n/5
title: R Code for Graphics

description: R code used to produce the figures in our paper.
DOI: 10.7925/drs1.ucdlib_31944
title: Nassau Street 34

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Frame structure, 5 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31954
title: 45-46 Nassau Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 5805
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31960
title: 48 Nassau Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork & stone structure, 5 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31966
title: Powerscourt Townhouse, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Stone structure, 5 levels above ground, constructed 1774.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31972
title: 2 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31978
title: 4 Anne Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 180
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31984
title: 6 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31987
title: 7 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 20th century.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.0318j/1
title: Transcriptome assemblies, TLR/LRR nucleotide sequences, and TLR/LRR amino acid sequences

description: Data files for: Halanych, K.M. and Kocot, K.M. 2014. Data from: Repurposed Transcriptomic Data Facilitate Discovery of Innate Immunity Toll-Like Receptor (TLR) Genes Across Lophotrochozoa. See README file for detailed description.
DOI: 10.5061/dryad.1cn5p/1
title: SPSS data: auditorily induced motion sickness

description: The SPSS data file contains subjective ratings of motion sickness and vection. Descriptive data (sex, age) and postural steadiness data (center of pressure) are included as well.
DOI: 10.5061/dryad.1n246/1
title: Selkoe_etal_Hawaii_genetics_dataset_5.8.14_suppl

description: Sheet 1: Table of life history characteristics and metrics of genetic diversity and structure for 37 Hawaii reef species. Sheet 2: List of publications associated with genetic data for each species. Sheet 3: Input file used to run a redundancy analysis (RDA) on the data. Sheet 4: Table S1. Sheet 5: Table S2. Sheet 6: Fig. S1
DOI: 10.5061/dryad.1n246/2
title: RDA_in_revised

description: R code used to run the redundancy analysis (RDA) using the input file in the companion excel file sheet 3.
DOI: 10.5061/dryad.21f62/1
title: SPTBN1_pre-phase

description: SPTBN1 alignment before phase detemrination (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/10
title: SPTBN1_phased

description: SPTBN1 phased alignment (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/2
title: PRKCI_pre-phase

description: PRKCI alignment before phasing (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/3
title: DARC_pre-phase

description: DARC alignment before phase detemrination (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/4
title: KITLG_pre-phase

description: KITLG alignment before phase detemrination (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/5
title: TF_pre-phase

description: TF alignment before phase detemrination (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/6
title: POLA1_pre-phase

description: POLA1 alignment before phase detemrination (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/7
title: GRIA3_pre-phase

description: GRIA3 alignment before phase detemrination (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/8
title: SRY

description: SRY alignment (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/9
title: CYTB

description: CYTB alignment (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.3543v/1
title: Detailed virus incidence report

description: Incidence of nepoviruses Grapevine fanleaf virus (GFLV) or Tomato ringspot virus (ToRSV) in an inoculated and successive apical leaves of inoculated panels of Nicotiana species.
DOI: 10.5061/dryad.44r25/1
title: Did males wave or not

description: This excel spreadsheet contains the data relating to whether males of all ages were equally likely to wave at females at all. This data was collected in the field in Zanzibar. See the second worksheet for a description of the headings.
DOI: 10.5061/dryad.46195/10
title: abyss-probe-alignment-logs.tar.gz

description: Log files from ABySS probe alignment.
DOI: 10.5061/dryad.46195/11
title: abyss-taxon-set-alignment-data.tar.gz

description: Archive file containing nested directories of ABySS alignment and analysis data.  See overall README or file-specific README.
DOI: 10.5061/dryad.46195/12
title: trinity-NOTES

description: NOTES describing the pipeline steps used to analyze the TRINITY data.
DOI: 10.5061/dryad.46195/13
title: trinity-contigs.tar.gz

description: UCE contigs enriched from hymenopteran taxa and assembled using TRINITY.
DOI: 10.5061/dryad.46195/14
title: trinity-uce-probes-to-contigs.lastz.tar.gz

description: LASTZ files showing mapping of UCE probes onto TRINITY contigs AND probe.matches.sqlite database.
DOI: 10.5061/dryad.46195/6
title: hymenoptera-data-sets.conf

description: Top level file defining taxon sets used in analyses (e.g. ABYSS and TRINITY, with and without sawflies.
DOI: 10.5061/dryad.46195/7
title: abyss-NOTES

description: NOTES describing the pipeline steps used to analyze the ABYSS data.
DOI: 10.5061/dryad.46195/8
title: abyss-contigs.tar.gz

description: UCE contigs enriched from hymenopteran taxa and assembled using ABySS.
DOI: 10.5061/dryad.46195/9
title: abyss-uce-probes-to-contigs.lastz.tar.gz

description: LASTZ files showing mapping of UCE probes onto in ABySS contigs AND probe.matches.sqlite database.
DOI: 10.5061/dryad.4nf1c/1
title: SNP discovery in wild and domesticated populations of blue catfish, Ictalurus furcatus, using genotyping-by-sequencing and subsequent SNP validation

description: The SNPs were called by TASSEL 4.0 after mapping the GBS raw reads to the blue catfish genome by BWA. The VCF file holding SNP information that retains information on depth of coverage for each allele, contains all raw SNP calls.
DOI: 10.5061/dryad.5cs10/1
title: Ford et al. Host Range Mutant Data

description: Data file contains fitness, plaque size, attachment rate and mutation frequency data for bacteriophage phi6 host range mutants that gained the ability to infect Pseudomonas pseudoalcaligenes ERA.
DOI: 10.5061/dryad.7j3g5/1
title: eDNA Data

description: Excel file containing raw eDNA data.
DOI: 10.5061/dryad.7mv2b/1
title: pswitchmale
DOI: 10.5061/dryad.7mv2b/2
title: pswitchprod
DOI: 10.5061/dryad.88fm3/2
title: ITS1 sequences from soil

description: ITS1 sequences coming from the soil of 204 plots have been obtained with the fungal universal primers ITS1F ITS2. The pyrosequencing outputs of six half 454 runs have been pooled in this unique fasta file. The number of each half of run (R meaning run and H meaning half) and of each MID used are mentionned in the name of each sequence. More information is provided on the information associated to these sequences in the "readme.txt" file
DOI: 10.5061/dryad.bj506/10
title: RHO_sequence_all_individuals
DOI: 10.5061/dryad.bj506/9
title: PTH_sequence_all_individuals