cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14751624
title: Phalloidin Staining of RFP-Lenti MDA-MB-231 GFP-actin Cells Exposed to Heat Shock

description: RFP-Lenti MDA-MB-231 GFP-actin cells were kept at 37C (ctrl) or exposed to heat shock at 45C (hs) for 60 minutes prior to fixation and staining with phalloidin and hoescht.
DOI: 10.3886/e142361
title: Helping Students FIG-ure It Out: A large-scale study of freshmen interest groups (FIGs) and student success

description: Freshman seminars are a ubiquitous offering in higher education, but they have not been evaluated using matched comparisons with data at scale. In this work, we use transcript data on over 76,000 students to examine the impact of first-year interest groups (FIGs) on student graduation and retention. We first apply propensity score matching on course-level data to account for selection bias. We find that graduation and re-enrollment rates for FIG students were higher than non-FIG students, an effect that was more pronounced for self-identified underrepresented racial minority students. We then employ topic modeling to analyze survey responses from over 12,500 FIG students to find that social aspects of FIGs were most beneficial to students. Interestingly, references to social aspects were not disproportionately present in the responses of self-identified underrepresented racial minority students.
DOI: 10.3886/e142361v1
title: Helping Students FIG-ure It Out: A large-scale study of freshmen interest groups (FIGs) and student success

description: Freshman seminars are a ubiquitous offering in higher education, but they have not been evaluated using matched comparisons with data at scale. In this work, we use transcript data on over 76,000 students to examine the impact of first-year interest groups (FIGs) on student graduation and retention. We first apply propensity score matching on course-level data to account for selection bias. We find that graduation and re-enrollment rates for FIG students were higher than non-FIG students, an effect that was more pronounced for self-identified underrepresented racial minority students. We then employ topic modeling to analyze survey responses from over 12,500 FIG students to find that social aspects of FIGs were most beneficial to students. Interestingly, references to social aspects were not disproportionately present in the responses of self-identified underrepresented racial minority students.
DOI: 10.17632/fm6f2v4jnf.1
title: Codes for: What drives volatility of the U.S. oil and gas firms?

description: The bundled file consists of codes used in the analysis that was performed in R. Before using, please read readme.txt and upload the data file first.
DOI: 10.17632/5mxs49y5gv.1
title: Data for: What drives volatility of the U.S. oil and gas firms?

description: The data consists of daily data on 15 firms in the U.S., Oil & Gas Exploration & Production sub-sector. The data consists of a list of 19 items that correspond to 15 firms and 4 additional indices. The names of the firms are in 'ticker' format. The additional 4 indices correspond to data on: Crude oil, S&P 500 Mini, MSCI World stock market index, Natural Gas. For each item, the relevant daily data are: 1) Dates 2) RV - realized volatility 3) OPEN - opening price 4) CLOSE - closing price 5) LOW - lowest price 6) HIGH - highest price All data were calculated from high-frequency data which are however not available for free.
DOI: 10.17632/t68872t2fn.1
title: Data for: Soil carbon density can increase when Australian savanna is converted to pasture, but may not change under intense cropping systems

description: Two datasets from the Douglas-Daly and the South Katherine agricultural regions of the Northern Territory, Australia. Both datasets provide savanna woodland soil profile data, as well as a young and old agricultural land-use systems that have replaced savanna woodland ecosystems. In Douglas-Daly, there are young and old pasture systems; in South Katherine there are young and old fields of Melon cropping
DOI: 10.5281/zenodo.4915054
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.5281/zenodo.4915167
title: FaceRecognition Model

description: Face Recognition Model
DOI: 10.5281/zenodo.4915166
title: FaceRecognition Model

description: Face Recognition Model
DOI: 10.5281/zenodo.4915056
title: Dados do teste piloto de segmentação

description: Dados do teste piloto de segmentação da pesquisa de doutorado intitulada "Segmentação de narrativas em Libras". Os dados estão divididos em três abas. Na primeira, temos a transcrição livre das orações segmentadas por narrativa. Neste teste, utilizamos seis narrativas. Na segunda, temos a descrição dos valores por oração, separados por: duração da oração, duração de pausa, existência ou não de pausa (afirmativo em caso de duração superior a 0,75 ms.), existência de mudança situacional, quantidade de mudanças situacionais, registro de respostas por tipo de mudança situacional (tempo, objeto, espaço, personagem, objetivo e causalidade), registro total de respostas dos participantes em cada oração, registro de respostas por participante (identificados por A, I, J, B, T, Jr, F, R). Na terceira, temos a média da frequencia relativa por participante e a média total nas seguintes categorias: respostas sim/não para existência ou não de mudança situacional (naoCHANGE/simCHANGE) e respostas sim/não para existência ou não de pausa (naopausa/simpausa).
DOI: 10.6084/m9.figshare.14721282.v9
title: THINGS-EEG

description: EEG data for 1854 object concepts presented in RSVP streams. Data from 50 participants.
DOI: 10.34740/kaggle/dsv/2315732
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.15468/vpzfgd
title: Trimma irinae, (Pisces; Gobioidei) a new species of gobiid fish from Milne Bay Province, Papua New Guinea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Winterbottom, Richard (2014): Trimma irinae, (Pisces; Gobioidei) a new species of gobiid fish from Milne Bay Province, Papua New Guinea. Zootaxa 3802 (2): 209-216, DOI: http://dx.doi.org/10.11646/zootaxa.3802.2.4
DOI: 10.6084/m9.figshare.13670089.v1
title: Alterations in bile acid metabolizing gut microbiota and specific bile acid genes as a precision medicine to subclassify NAFLD

description: Multiple mechanisms for the gut microbiome contributing to the pathogenesis of non-alcoholic fatty liver disease (NAFLD) have been implicated. Here, this post-hoc study aim to investigate the contribution and potential application for altered bile acid (BA) metabolizing microbes in NAFLD using whole metagenome sequencing (WMS) data. The discovery cohort consisted of 86 well-characterized biopsy-proven NAFLD patients and 38 healthy controls. Assembly-based analysis was performed to identify BA-metabolizing microbes. Statistical tests, feature selection and microbial co-abundance analysis were integrated to identify microbial alterations and markers in NAFLD. An independent validation cohort was subjected to similar analyses. NAFLD microbiota exhibited decreased diversity and microbial associations. We established a classifier model with 53 differential species exhibiting a robust diagnostic accuracy (AUC=0.97) for dectecting NAFLD.
DOI: 10.5281/zenodo.4912243
title: data of science advance

description: computational data of science advance.
DOI: 10.5281/zenodo.4912242
title: data of science advance

description: computational data of science advance.
DOI: 10.6084/m9.figshare.14751714
title: GSE10666_3m_H3K27ac

description: chip-seq
DOI: 10.5281/zenodo.4911190
title: Word order in the Malayo-Polynesian languages of Southeast Asia

description: Dataset for the Malayo-Polynesian languages included in the chapter: Donohue, Mark. To appear (2021?). Word Order. In Antoinette Schapper and Sander Adelaar, eds, <em>The Oxford Guide of Malayo-Polynesian languages</em>. Oxford: Oxford University Press. Please cite this chapter if data from the dataset is used.
DOI: 10.5281/zenodo.4915572
title: Phonotactic dataset of Austronesian languages of Southeast Asia

description: Dataset for the Malayo-Polynesian languages included in the chapter: Donohue, Mark. To appear (2021?). Phonotactic and morphophonological notes. In Antoinette Schapper and Sander Adelaar, eds, <em>The Oxford Guide of Malayo-Polynesian languages</em>. Oxford: Oxford University Press. If used, please cite this chapter.
DOI: 10.5281/zenodo.4915571
title: Phonotactic dataset of Austronesian languages of Southeast Asia

description: Dataset for the Malayo-Polynesian languages included in the chapter: Donohue, Mark. To appear (2021?). Phonotactic and morphophonological notes. In Antoinette Schapper and Sander Adelaar, eds, <em>The Oxford Guide of Malayo-Polynesian languages</em>. Oxford: Oxford University Press. If used, please cite this chapter.
DOI: 10.6084/m9.figshare.14428913
title: Recipe 2

description: Selection of model inputs outputs used for running recipe 2.<br>
DOI: 10.6084/m9.figshare.14428913.v1
title: Recipe 2

description: Selection of model inputs outputs used for running recipe 2.<br>
DOI: 10.6084/m9.figshare.14751711
title: Heat flow data in the Amerasia Basin measured by the CAEs

description: This dataset contains the heat flow measured by the Chinese Arctic Expeditions from 2014 to 2018. The measurements were mostly conducted in the region of Chukchi Borderland in the central Arctic
DOI: 10.6084/m9.figshare.12986051
title: Evolutionary Similarity Index

description: Data associated with "Non-phylogenetic identification of co-evolving genes for reconstructing the archaeal Tree of Life"<br>1) archaeal gene families assembled from 42 genomes using GET_HOMOLOGUES<br>2) Evolutionary Similarity Indices between archaeal gene families<br>3) simulated datasets (10 replicates of each), containing true alignments, MAFFT realignments, distance matrices, ml trees, and INDELible configuration files.<br>4) Alignments and distance matrices of archaeal gene families<br>5) gene family co-evolving clusters<br>6) core CES cluster trees (LG+F+G+C60)
DOI: 10.6084/m9.figshare.12986051.v3
title: Evolutionary Similarity Index

description: Data associated with "Non-phylogenetic identification of co-evolving genes for reconstructing the archaeal Tree of Life"<br>1) archaeal gene families assembled from 42 genomes using GET_HOMOLOGUES<br>2) Evolutionary Similarity Indices between archaeal gene families<br>3) simulated datasets (10 replicates of each), containing true alignments, MAFFT realignments, distance matrices, ml trees, and INDELible configuration files.<br>4) Alignments and distance matrices of archaeal gene families<br>5) gene family co-evolving clusters<br>6) core CES cluster trees (LG+F+G+C60)
DOI: 10.6084/m9.figshare.12986051.v2
title: Evolutionary Similarity Index

description: Data associated with "Non-phylogenetic identification of co-evolving genes for reconstructing the archaeal Tree of Life"<br>1) archaeal gene families assembled from 42 genomes using GET_HOMOLOGUES<br>2) Evolutionary Similarity Indices between archaeal gene families<br>3) simulated datasets (10 replicates of each), containing true alignments, MAFFT realignments, distance matrices, ml trees, and INDELible configuration files.<br>4) Alignments and distance matrices of archaeal gene families<br>5) gene family co-evolving clusters
DOI: 10.25919/7r28-y781
title: Parkes pulsar observations with undefined project IDs for 2021APRS_01

description: Parkes pulsar observations with undefined project IDs for 2021APRS. This collection contains observations from project ID PX073.
DOI: 10.25919/98h5-n137
title: Parkes observations for project P1083 semester 2021APRS_01

description: The breakthrough observation of two ultra strong millisecond duration radio pulses temporally coincident with a double-peaked hard X-ray burst from the magnetar SGR 1935+2154 has recently lent strong support to the since long proposed model of a connection among the magnetars and the Fast Radio Bursts (FRBs). We are mounting a NAPA program aimed to run a series of "simultaneous" observations in the radio and X-ray bands of both magnetars and ordinary pulsars showing a magnetar-like behavior. The trigger will be suitable X-ray observations allocated after the occurrence of an activation (or reactivation) in the high energy bands of the neutron star underlying the targets. The project will address a range of astrophysical questions, among which: (i) the occurrence of a the link among magnetars and FRBs, (ii) the radio emission mechanisms operating in at least a subset of the magnetar population; (iii) the occurrence (if any) of an evolutionary path connecting the magnetars to the ordinary radio pulsar population
DOI: 10.6084/m9.figshare.14751744
title: Conditionally Rare Taxa Abundance and Taxonomy Information

description: Table displaying the relative abundance and taxonomic classification of OTUs identified as conditionally rare taxa in samples from the dataset.
DOI: 10.6084/m9.figshare.14751744.v1
title: Conditionally Rare Taxa Abundance and Taxonomy Information

description: Table displaying the relative abundance and taxonomic classification of OTUs identified as conditionally rare taxa in samples from the dataset.
DOI: 10.7910/dvn/qakkj5
title: Seasonal Variations in Sex Steroids in a Young Male Population and Their Relationship with Plasma Levels of Vitamin D

description: Purpose: Vitamin D (VD) acts on sperm motility, capacitation and survival but its role in steroidogenesis is less clear. Aims: To analyze seasonal variations in sex steroids and VD in a healthy male population. Materials and Methods: Twenty-nine healthy males, 34.0±4.8 years were included. Blood collection in winter (W) and summer (S) was performed to measure: 25OHD, total testosterone (TT), free testosterone (FT), estradiol (E2), luteinizing hormone (LH), and sex hormone binding globulin (SHBG). Testosterone/estradiol (T/E2) ratio was calculated. Results: In W, lower levels of 25OHD: 18.8±7.2 ng/mL vs. 38.8±11.9 ng/mL (p&lt;0.0001) and LH: 3.5±1.2 mU/mL vs. 3.9±1.5 mU/mL (p=0.05), and higher levels of TT: 501.9±157.7 ng/dL vs. 405.0±128.0 ng/dL (p=0.0003), FT: 11.8±4.1 ng/dL vs. 10.2±3.7 ng/dL (p=0.017), SHBG: 28.5±10.9 nmol/L vs. 23.6±7.9 nmol/L (p=0.002) and T/E2 ratio: 30.7±19.7 ng/dL/pg/mL vs. 17.3±3.6 ng/dL/pg/mL (p=0.0015) with no variation in E2 levels were observed. A positive correlation between 25OHD and E2 (r=0.28, p=0.04) and negative correlations between 25OHD and TT (r=-0.27, p=0.049), 25OHD and FT (r=-0.32, p=0.01), and 25OHD and T/E2 (r=-0.44, p=0.0008) were found. Conclusions: In healthy young male population, seasonal variations were observed in 25OHD and LH levels (higher in S) and in TT, FT, SHBG levels, and T/E2 (higher in W). Lower values of TT and FT in S are accompanied by higher levels of LH, which rules out a central mechanism for lowering testosterone. 25OHD negatively correlated with TT, FT, and T/E2 and positively correlated with E2, suggesting a relationship between VD status and changes in gonadal steroids.
DOI: 10.25345/c54n8b
title: MassIVE MSV000087590 - Probiotic Extracts ran 5.29.21 (sent 4.21.21)
title: Raw (.d) and mzXML files for the probiotic extracts sent to GT on 4.21.21 and run starting 5.29.21. Meant for use among collaborators. Will upload separate massive job when data is published. Metadata attached. Please contact Jessica with questions.
DOI: 10.6084/m9.figshare.14572092
title: Feasibility study Western Australia

description: Feasibility of providing unguided online cognitive behavioural therapy for insomnia to community-dwelling older adults in Western Australia
DOI: 10.6084/m9.figshare.14572092.v1
title: Feasibility study Western Australia

description: Feasibility of providing unguided online cognitive behavioural therapy for insomnia to community-dwelling older adults in Western Australia
DOI: 10.6084/m9.figshare.14751978
title: Supplemental Table 1.docx

description: We have discovered the overlap of the differentially expressed circRNAs according to the transcriptome-wide landscape of circRNAs in the human coronary artery reported by Pan RY and Zhao CH et al., in 2019.In total, we have summarized 37 overlapping differentially expressed circRNAs consistent with our previous study in Supplemental Table 1
DOI: 10.6084/m9.figshare.14751978.v1
title: Supplemental Table 1.docx

description: We have discovered the overlap of the differentially expressed circRNAs according to the transcriptome-wide landscape of circRNAs in the human coronary artery reported by Pan RY and Zhao CH et al., in 2019.In total, we have summarized 37 overlapping differentially expressed circRNAs consistent with our previous study in Supplemental Table 1
DOI: 10.25442/hku.14678898
title: Supporting data for Meta-analysis of host responses identifies gene network dysfunction during viral infection

description: Viral infection of a susceptible host is often accompanied by the induction a response in the host to attempt to restrict the harm caused by these invading pathogens. My project utilize a two-pronged approach combining meta-analysis and co-expression to identify how different hosts respond to viral infection. This dataset contains the processed data files for many stages of this analysis. Meta-analysis through recurrence identifies the number of times a gene is differentially expressed across a series of datasets. This enables the remove of nuisance gene expression signatures while amplifying the most robust gene signal that best describes a hosts response to infection. <br>Co-expression enables the determination of gene-gene relationships and expands on identifying genes with shared functionality in the form of co-expression networks. A human network was purposely built for this project to examine these relationships between human genes. By identifying genes that are most reliably differentially expressed and also have strong co-expression with each other, it is possible to identify conserved functional networks that form the foundation of a host's response to viral infection. <br>This is a very applicable approach and can be used to assess how different species respond when subject to any particular distress (e.g. infectious disease etc). An integrative analysis using ChIP-seq and single-cell RNA-seq data were also performed to assess the characterizations from meta-analysis and co-expression in more detail with respect to a particular infectious disease, influenza.
DOI: 10.25442/hku.14678898.v1
title: Supporting data for Meta-analysis of host responses identifies gene network dysfunction during viral infection

description: Viral infection of a susceptible host is often accompanied by the induction a response in the host to attempt to restrict the harm caused by these invading pathogens. My project utilize a two-pronged approach combining meta-analysis and co-expression to identify how different hosts respond to viral infection. This dataset contains the processed data files for many stages of this analysis. Meta-analysis through recurrence identifies the number of times a gene is differentially expressed across a series of datasets. This enables the remove of nuisance gene expression signatures while amplifying the most robust gene signal that best describes a hosts response to infection. <br>Co-expression enables the determination of gene-gene relationships and expands on identifying genes with shared functionality in the form of co-expression networks. A human network was purposely built for this project to examine these relationships between human genes. By identifying genes that are most reliably differentially expressed and also have strong co-expression with each other, it is possible to identify conserved functional networks that form the foundation of a host's response to viral infection. <br>This is a very applicable approach and can be used to assess how different species respond when subject to any particular distress (e.g. infectious disease etc). An integrative analysis using ChIP-seq and single-cell RNA-seq data were also performed to assess the characterizations from meta-analysis and co-expression in more detail with respect to a particular infectious disease, influenza.
DOI: 10.25387/g3.14738895
title: Supplemental Material for Murakami et al., 2021

description: This manuscript provides the supplemental data for Murakami et al, 2021. The legends can be found in a DOCX file uploaded here.
DOI: 10.25387/g3.14738895.v2
title: Supplemental Material for Murakami et al., 2021

description: This manuscript provides the supplemental data for Murakami et al, 2021. The legends can be found in a DOCX file uploaded here.
DOI: 10.25387/g3.14738895.v1
title: Supplemental Material for Murakami et al., 2021

description: This manuscript provides the supplemental data for Murakami et al, 2021.
DOI: 10.6084/m9.figshare.14751984
title: SIFTER Gel Images From Immunoprobing with Various Anti-Actin Antibodies

description: SIFTER gels immunoprobed with the indicated vendor's anti-actin antibody. Gels labeled H14 and H16 were immunoprobed using a gasket to probe with multiple antibodies simultaneously. The antibodies used and their locations on the gel are provided in 'H14 and H16 Antibody Chart.docx' (H14 has an image labeled 488 and 635 and the chart indicates which image each antibody may be found on)..
DOI: 10.6084/m9.figshare.14751984.v1
title: SIFTER Gel Images From Immunoprobing with Various Anti-Actin Antibodies

description: SIFTER gels immunoprobed with the indicated vendor's anti-actin antibody. Gels labeled H14 and H16 were immunoprobed using a gasket to probe with multiple antibodies simultaneously. The antibodies used and their locations on the gel are provided in 'H14 and H16 Antibody Chart.docx' (H14 has an image labeled 488 and 635 and the chart indicates which image each antibody may be found on)..
DOI: 10.6084/m9.figshare.14752377
title: COVID-19 survivor data for mental health after six-month

description: The dataset for depression, anxiety and post-traumatic growth among COVID-19 survivors six-month after discharge.
DOI: 10.6084/m9.figshare.12931412
title: F and G-actin separations from MDA-MB-231 GFP-actin cells

description: These images were generated by the SIFTER assay performed on MDA-MB-231 GFP-actin cells and immunoprobed for GFP. Images are annotated with the location of F-actin and G-actin relative to the microwells (e.g., F_right, etc.).
DOI: 10.6084/m9.figshare.12931412.v1
title: F and G-actin separations from MDA-MB-231 GFP-actin cells

description: These images were generated by the SIFTER assay performed on MDA-MB-231 GFP-actin cells and immunoprobed for GFP. Images are annotated with the location of F-actin and G-actin relative to the microwells (e.g., F_right, etc.).
DOI: 10.6084/m9.figshare.12931229
title: Multiplexing F-actin, MT and IF LatA and Control Data

description: These are SIFTER-generated gel images of separations of cytoskeletal complexes (e.g., F-actin, vimentin intermediate filaments, IF and beta-tubulin microtubules, MT) from monomeric proteins. Files indicate the cell type (U2OS), and whether the cells were drug-treated (LatA) or not (CTRL). Please note that the word "smooth" is included in the file names to indicate images were median filtered (using the Fiji "Remove Outliers" macro with settings: threshold = 50 AFU, and pixel radius = 2). For files labeled "transformed", the image was aligned to the gel image with the same "gel number" using Landmark Correspondence in Fiji, after the gel was stripped and re-probed for beta-tubulin.