cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16852842
title: Table S4 from <i>CRISPR-Cas</i> is associated with fewer antibiotic resistance genes in bacterial pathogens

description: Model estimates for binomial generalised linear model of CRISPR-Cas presence/absence with fixed effects of number of ABR genes, ICEs, <i>IntI1</i> copies and plasmid replicons as well as species, and interaction terms between species and each other fixed effect.
DOI: 10.6084/m9.figshare.16852842.v1
title: Table S4 from <i>CRISPR-Cas</i> is associated with fewer antibiotic resistance genes in bacterial pathogens

description: Model estimates for binomial generalised linear model of CRISPR-Cas presence/absence with fixed effects of number of ABR genes, ICEs, <i>IntI1</i> copies and plasmid replicons as well as species, and interaction terms between species and each other fixed effect.
DOI: 10.6084/m9.figshare.16852845
title: Table S3 from <i>CRISPR-Cas</i> is associated with fewer antibiotic resistance genes in bacterial pathogens

description: Model estimates for linear model of genome lengths with fixed effects of CRISPR-Cas presence/absence (binomial), species (categorical) and an interaction term between the two. *Predictions were not made for this species, as it lacks CRISPR-Cas.
DOI: 10.6084/m9.figshare.16852845.v1
title: Table S3 from <i>CRISPR-Cas</i> is associated with fewer antibiotic resistance genes in bacterial pathogens

description: Model estimates for linear model of genome lengths with fixed effects of CRISPR-Cas presence/absence (binomial), species (categorical) and an interaction term between the two. *Predictions were not made for this species, as it lacks CRISPR-Cas.
DOI: 10.15468/2d7gnw
title: Bulbophyllum hamatum (Orchidaceae), a new species from Hubei, central China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yan, Qi, Li, Xin-Wei, Wu, Jin-Qing (2021): Bulbophyllum hamatum (Orchidaceae), a new species from Hubei, central China. Phytotaxa 523 (3): 269-272, DOI: 10.11646/phytotaxa.523.3.9
DOI: 10.15468/5fsgps
title: Molecular systematics and genital morphology of the Neotropical cockroaches from the genus Xestoblatta (Blattellidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vélez-Bravo, Andrés, Daza, Juan M. (2021): Molecular systematics and genital morphology of the Neotropical cockroaches from the genus Xestoblatta (Blattellidae). Zootaxa 5057 (3): 301-328, DOI: https://doi.org/10.11646/zootaxa.5057.3.1
DOI: 10.6084/m9.figshare.12924030.v2
title: tRNA-modifying enzyme mutations induce codon-specific mistranslation and protein aggregation in yeast

description: Protein synthesis rate and accuracy are tightly controlled by the cell and are essential for proteome homoeostasis (proteostasis); however, the full picture of how mRNA translational factors maintain protein synthesis accuracy and co-translational protein folding are far from being fully understood. To address this question, we evaluated the role of 70 yeast tRNA-modifying enzyme genes on protein aggregation and used mass spectrometry to identify the aggregated proteins. We show that modification of uridine at anticodon position 34 (U34) by the tRNA-modifying enzymes Elp1, Elp3, Sml3 and Trm9 is critical for proteostasis, the mitochondrial tRNA-modifying enzyme Slm3 plays a fundamental role in general proteostasis and that stress response proteins whose genes are enriched in codons decoded by tRNAs lacking mcm<sup>5</sup>U<sub>34</sub>, mcm<sup>5</sup>s<sup>2</sup>U<sub>34</sub>, ncm<sup>5</sup>U<sub>34</sub>, ncm<sup>5</sup>Um<sub>34</sub>, modifications are overrepresented in protein aggregates of the <i>ELP1, SLM3</i> and <i>TRM9</i> KO strains. Increased rates of amino acid misincorporation were also detected in these strains at protein sites that specifically mapped to the codons sites that are decoded by the hypomodified tRNAs, demonstrating that U<sub>34</sub> tRNA modifications safeguard the proteome from translational errors, protein misfolding and proteotoxic stress.
DOI: 10.6084/m9.figshare.12924030
title: tRNA-modifying enzyme mutations induce codon-specific mistranslation and protein aggregation in yeast

description: Protein synthesis rate and accuracy are tightly controlled by the cell and are essential for proteome homoeostasis (proteostasis); however, the full picture of how mRNA translational factors maintain protein synthesis accuracy and co-translational protein folding are far from being fully understood. To address this question, we evaluated the role of 70 yeast tRNA-modifying enzyme genes on protein aggregation and used mass spectrometry to identify the aggregated proteins. We show that modification of uridine at anticodon position 34 (U34) by the tRNA-modifying enzymes Elp1, Elp3, Sml3 and Trm9 is critical for proteostasis, the mitochondrial tRNA-modifying enzyme Slm3 plays a fundamental role in general proteostasis and that stress response proteins whose genes are enriched in codons decoded by tRNAs lacking mcm<sup>5</sup>U<sub>34</sub>, mcm<sup>5</sup>s<sup>2</sup>U<sub>34</sub>, ncm<sup>5</sup>U<sub>34</sub>, ncm<sup>5</sup>Um<sub>34</sub>, modifications are overrepresented in protein aggregates of the <i>ELP1, SLM3</i> and <i>TRM9</i> KO strains. Increased rates of amino acid misincorporation were also detected in these strains at protein sites that specifically mapped to the codons sites that are decoded by the hypomodified tRNAs, demonstrating that U<sub>34</sub> tRNA modifications safeguard the proteome from translational errors, protein misfolding and proteotoxic stress.
DOI: 10.6084/m9.figshare.12915781
title: The G-patch activators Pfa1 and PINX1 exhibit different modes of interaction with the Prp43 RNA helicase

description: Prp43 is a DEAH-box RNA helicase involved in both splicing and ribosome biogenesis. Its activities are directly stimulated by several co-activators that share a G-patch domain. The substrates of Prp43, its mechanism of action and the modes of interaction with and activation by G-patch proteins have been only partially characterized. We investigated how Pfa1 and PINX1, two G-patch proteins involved in ribosome biogenesis, interact with Prp43. We demonstrate that a protruding loop connecting the β4 and β5 strands of Prp43 OB fold is crucial for the binding of the G-patch domain of Pfa1. However, neither this loop nor the entire OB fold of Prp43 is essential for PINX1 binding. We conclude that the binding modes of Pfa1 and PINX1 G-patches to Prp43 are different. Nevertheless, stimulation of the ATPase and helicase activities of Prp43 by both full-length Pfa1 and PINX1 requires the β4-β5 loop. Moreover, we show that disruption of this loop completely abrogates Prp43 activity during yeast ribosome biogenesis but does not prevent its integration within pre-ribosomal particles. We propose that the β4-β5 loop plays a crucial role in the transmission of conformational changes induced by binding of the G-patch to Prp43 active site and substrate RNA.
DOI: 10.6084/m9.figshare.12915781.v1
title: The G-patch activators Pfa1 and PINX1 exhibit different modes of interaction with the Prp43 RNA helicase

description: Prp43 is a DEAH-box RNA helicase involved in both splicing and ribosome biogenesis. Its activities are directly stimulated by several co-activators that share a G-patch domain. The substrates of Prp43, its mechanism of action and the modes of interaction with and activation by G-patch proteins have been only partially characterized. We investigated how Pfa1 and PINX1, two G-patch proteins involved in ribosome biogenesis, interact with Prp43. We demonstrate that a protruding loop connecting the β4 and β5 strands of Prp43 OB fold is crucial for the binding of the G-patch domain of Pfa1. However, neither this loop nor the entire OB fold of Prp43 is essential for PINX1 binding. We conclude that the binding modes of Pfa1 and PINX1 G-patches to Prp43 are different. Nevertheless, stimulation of the ATPase and helicase activities of Prp43 by both full-length Pfa1 and PINX1 requires the β4-β5 loop. Moreover, we show that disruption of this loop completely abrogates Prp43 activity during yeast ribosome biogenesis but does not prevent its integration within pre-ribosomal particles. We propose that the β4-β5 loop plays a crucial role in the transmission of conformational changes induced by binding of the G-patch to Prp43 active site and substrate RNA.
DOI: 10.6084/m9.figshare.12924030.v1
title: tRNA-modifying enzyme mutations induce codon-specific mistranslation and protein aggregation in yeast

description: /Summary Protein synthesis rate and accuracy are tightly controlled by the cell and are essential for proteome homeostasis for <i>bona fide</i> protein synthesis (proteostasis), however the full picture of how mRNA translational factors maintain protein synthesis accuracy and co-translational protein folding are far from being fully understood. To address this question, we evaluated the role of 70 yeast tRNA modifying enzyme genes on protein aggregation and used mass spectrometry to identify the aggregated proteins. We show that modification of uridine at anticodon position 34 (U34) by the tRNA modifying enzymes Elp1, Elp3, Sml3 and Trm9 is critical for proteostasis, the mitochondrial tRNA-modifying enzyme Slm3 plays a fundamental role in general proteostasis and that stress response proteins whose genes are enriched in codons decoded by tRNAs lacking mcm<sup>5</sup>U<sub>34</sub>, mcm<sup>5</sup>s<sup>2</sup>U<sub>34</sub>, ncm<sup>5</sup>U<sub>34</sub>, ncm<sup>5</sup>Um<sub>34</sub>, modifications are overrepresented in protein aggregates of the <i>ELP1, SLM3</i> and <i>TRM9</i> KO strains. Increased rates of amino acid misincorporation were also detected in these strains at protein sites that specifically mapped to the codons sites that are decoded by the hypomodified tRNAs, demonstrating that U<sub>34</sub> tRNA modifications safeguard the proteome from translational errors, protein misfolding and proteotoxic stress.
DOI: 10.15468/dhd6w9
title: Description of five new species of Amblyseiinae (Acari: Phytoseiidae) associated with medicinal plants from the Northern Himalayan Zone of West Bengal, India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Molla, Md. Iftiar Hossain, Karmakar, Krishna (2021): Description of five new species of Amblyseiinae (Acari: Phytoseiidae) associated with medicinal plants from the Northern Himalayan Zone of West Bengal, India. Zootaxa 5057 (3): 364-384, DOI: https://doi.org/10.11646/zootaxa.5057.3.3
DOI: 10.6084/m9.figshare.16689472
title: Aligned peritrichid 18S dataset used for phylogeny reconstruction on 27 September 2021.

description: The 18S rRNA dataset comprises 18S sequence of <i>Lagenophrys </i>sp. from <i>Cryptocandona</i> sp. (INSD accession number LC651416), those used in Liao et al. (2021: Molecular Phylogenetics and Evolution 158: 107089), and one of <i>Urceolaria parakorschelti </i>(KP698204).<br>"18S_mafft.fas" is one that was aligned by using the Q-INS-i strategy in MAFFT ver. 7.<br>"18S_mafft_trimm.fas" represents the trimmed version of 18S_mafft.fas; it was trimmed in MEGA7 to match the shortest length.<br>18S_mafft_trim.fas was used to reconstruct peritrich phylogeny in Kakui and Munakata (accepted: Bulletin of the Otaru Museum).
DOI: 10.26188/5ebce2c3c57bd
title: Data for figures.xlsx

description: Project investigated the relationship between plant morphological traits (shoot biomass, SLA, RMF, SRL), water-use (evapo-transpiration), and drought resistance.
DOI: 10.18712/norlag3_1
title: Den norske studien av livsløp, aldring og generasjon - NorLAG 2002-2017

description: NorLAG er en studie som gir ny kunnskap om aldring og eldre år i Norge. Så langt er det gjennomført tre runder med datainnsamling (2002, 2007 og 2017). Studien belyser sentrale livsområder til personer født mellom 1922 og 1966 og deres nære familiemedlemmer (partner, foreldre og barn). 
Spørreskjemadata kobles til årlige registerdata. Denne kombinasjonen av data gir unike muligheter for forskere fra ulike disipliner til å studere årsaker og konsekvenser av tidspunkt og rekkefølge for overganger som preger andre halvdel av livet.

NorLAG data er gratis tilgjengelig for forskningsformål. I tillegg til en basismodul med nøkkelopplysninger om respondenten (f.eks. kjønn, fødselsår), er dataene organisert i 18 moduler som dekker følgende hovedområder: (1) Familie og sosiale nettverk; (2) Arbeid og aktiviteter; og (3) Helse, velvære og verdier.

    Familie og sosiale nettverk
        Barn (CH)
        Partner (PA)
        Foreldre (PT)
        Familie og nettverk (FN)
        Hushold (HH)
        Sivil status (register)
        Bolig og bomiljø (HE)
    Arbeid og aktiviteter
        Arbeid og pensjonering (WR)
        Aktiviteter (AC)
        Sykefravær (register)
        Pensjon og arbeidsavklaringspenger (register)
        Utdanning (register)
        Inntekt (register)
    Helse, velvære og verdier
        Helse og omsorg (HC)
        Velvære (WB)
        Personlighet (PC)
        Verdier og holdninger (VA)
        Livshendelser (LE)
DOI: 10.48370/ofd/txm7cr
title: Neoërysiphe galeopsidis (DC.) U. Braun, 449

description: Fungarium Micromycetes
DOI: 10.5281/zenodo.5591756
title: The EFFECTIVE study - raw data

description: Raw data of the "EFFECTIVE" study
DOI: 10.5281/zenodo.5591755
title: The EFFECTIVE study - raw data

description: Raw data of the "EFFECTIVE" study
DOI: 10.48370/ofd/p1p6at
title: Neoërysiphe galeopsidis (DC.) U. Braun, 452

description: Fungarium Micromycetes
DOI: 10.5517/ccdc.csd.cc28rd6n
title: CCDC 2107851: Experimental Crystal Structure Determination

description: Related Article: Amita Singh, Gabriele Kociok-Köhn, Ratna Chauhan, Mohd. Muddassir, Suresh W. Gosavi, Abhinav Kumar|2022|J.Mol.Struct.|1249|131630|doi:10.1016/j.molstruc.2021.131630
DOI: 10.5517/ccdc.csd.cc28rd7p
title: CCDC 2107852: Experimental Crystal Structure Determination

description: Related Article: I. Fujii|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|999|doi:10.1107/S2056989021009245
DOI: 10.18712/norlag_v2
title: Den norske studien av livsløp, aldring og generasjon - NorLAG 2002-2017

description: NorLAG er en studie som gir ny kunnskap om aldring og eldre år i Norge. Så langt er det gjennomført tre runder med datainnsamling (2002, 2007 og 2017). Studien belyser sentrale livsområder til personer født mellom 1922 og 1966 og deres nære familiemedlemmer (partner, foreldre og barn). Spørreskjemadata kobles til årlige registerdata. Denne kombinasjonen av data gir unike muligheter for forskere fra ulike disipliner til å studere årsaker og konsekvenser av tidspunkt og rekkefølge for overganger som preger andre halvdel av livet. NorLAG data er gratis tilgjengelig for forskningsformål. I tillegg til en basismodul med nøkkelopplysninger om respondenten (f.eks. kjønn, fødselsår), er dataene organisert i 18 moduler som dekker følgende hovedområder: (1) Familie og sosiale nettverk; (2) Arbeid og aktiviteter; og (3) Helse, velvære og verdier. Familie og sosiale nettverk Barn (CH) Partner (PA) Foreldre (PT) Familie og nettverk (FN) Hushold (HH) Sivil status (register) Bolig og bomiljø (HE) Arbeid og aktiviteter Arbeid og pensjonering (WR) Aktiviteter (AC) Sykefravær (register) Pensjon og arbeidsavklaringspenger (register) Utdanning (register) Inntekt (register) Helse, velvære og verdier Helse og omsorg (HC) Velvære (WB) Personlighet (PC) Verdier og holdninger (VA) Livshendelser (LE)
DOI: 10.5517/ccdc.csd.cc24tx96
title: CCDC 1991108: Experimental Crystal Structure Determination

description: Related Article: Dae Young Bae, Gunhee Lee, Eunsung Lee|2021|Dalton Trans.|50|14139|doi:10.1039/D1DT02375F
DOI: 10.5517/ccdc.csd.cc24txb7
title: CCDC 1991109: Experimental Crystal Structure Determination

description: Related Article: Dae Young Bae, Gunhee Lee, Eunsung Lee|2021|Dalton Trans.|50|14139|doi:10.1039/D1DT02375F
DOI: 10.5517/ccdc.csd.cc24txc8
title: CCDC 1991110: Experimental Crystal Structure Determination

description: Related Article: Dae Young Bae, Gunhee Lee, Eunsung Lee|2021|Dalton Trans.|50|14139|doi:10.1039/D1DT02375F
DOI: 10.5517/ccdc.csd.cc28b0m8
title: CCDC 2094999: Experimental Crystal Structure Determination

description: Related Article: Peiyao Pan, Chuanjun Zhou, Hao Li, Chen Zhu, Cheng Chen, Xi Kang, Manzhou Zhu|2021|Nanoscale|13|17162|doi:10.1039/D1NR05123G
DOI: 10.25345/c51g3s
title: MassIVE MSV000088254 - The Mycobacterium tuberculosis O-phosphorylation landscape
title: LC-MS/MS tryptic peptide data comprising both label free (phosphoproteome) and TMT10 (global and phosphoproteome) analysis of mycobacterium tuberculosis mutants (WT, GoF, and LoF) grown at stationary phase. Data was searched with MS-GF+ (TMT) and MaxQuant (label free).
DOI: 10.48370/ofd/ccwosd
title: Neoërysiphe galeopsidis (DC.) U. Braun, 447

description: Fungarium Micromycetes
DOI: 10.25721/ney8-we88
title: Carmen-Suzanne
DOI: 10.25721/a7gc-h230
title: Michaud veillait
DOI: 10.6084/m9.figshare.13152950
title: The Mother Tongue in Second Language Acquisition A Positive Empirical Account.xlsx

description: Continuing the discussion about the effect of L1 use on L2 learning, this study investigates the effect of using L1 as a form of code-switching during an English grammar lesson at a university in the Republic of Korea. The aim of this study is to contribute empirical evidence about the effectiveness of code-switching as a form of translanguaging to better understand and define the optimal use of L1 in the L2 classroom. The study used existing teachers and classrooms in a quasi-experimental design with experimental and control groups to provide evidence that code-switching is not detrimental as a pedagogical approach to grammar teaching compared to a monolingual approach, in fact, it can be used quite effectively, even when teachers have little or no knowledge of students’ first language. However, the guidance of bilingual experts was required to design effective and structured code-switching for the lesson. The novel contribution of this research is the use of code-switching in grammar instruction and the use of different teachers with varying levels of L1 proficiency in the L2 classroom.<br>
DOI: 10.6084/m9.figshare.13152950.v1
title: The Mother Tongue in Second Language Acquisition A Positive Empirical Account.xlsx

description: Continuing the discussion about the effect of L1 use on L2 learning, this study investigates the effect of using L1 as a form of code-switching during an English grammar lesson at a university in the Republic of Korea. The aim of this study is to contribute empirical evidence about the effectiveness of code-switching as a form of translanguaging to better understand and define the optimal use of L1 in the L2 classroom. The study used existing teachers and classrooms in a quasi-experimental design with experimental and control groups to provide evidence that code-switching is not detrimental as a pedagogical approach to grammar teaching compared to a monolingual approach, in fact, it can be used quite effectively, even when teachers have little or no knowledge of students’ first language. However, the guidance of bilingual experts was required to design effective and structured code-switching for the lesson. The novel contribution of this research is the use of code-switching in grammar instruction and the use of different teachers with varying levels of L1 proficiency in the L2 classroom.<br>
DOI: 10.6084/m9.figshare.16853452
title: Supplemental Table 1 from Social convergence of gut microbiomes in vampire bats

description: Sequence and analyses related metadata for all bats in the study, including origin, captivity status, date of sampling, sex, vaccination status, and type of sample.
DOI: 10.6084/m9.figshare.16853452.v1
title: Supplemental Table 1 from Social convergence of gut microbiomes in vampire bats

description: Sequence and analyses related metadata for all bats in the study, including origin, captivity status, date of sampling, sex, vaccination status, and type of sample.
DOI: 10.6084/m9.figshare.16853350
title: Data of a Manipulator Size Optimization Method Based on Dexterous Workspace Volume

description: Data of a Manipulator Size Optimization Method Based on Dexterous Workspace Volume
DOI: 10.25721/x5dx-vg45
title: Regina coco, crème à la vanille
DOI: 10.22022/ece/10-2021.17598
title: Supplementary Data to Potentials for reductions of global GHG and air pollutants from circular municipal waste management systems

description: This dataset provides complementary information supporting the manuscript Potentials for reductions of global GHG and air pollutants from circular municipal waste management systems, submitted for publication as a research article in Nature Communications. The dataset provides detailed information on emission estimates of methane, particulate matter and air pollutants from municipal solid waste, including emission factors, and municipal solid waste generation and treatment, globally as well as by region (urban-rural) and scenario.
DOI: 10.48370/ofd/fswngl
title: Neoërysiphe galeopsidis (DC.) U. Braun, 450

description: Fungarium Micromycetes
DOI: 10.6084/m9.figshare.16853245
title: Costs and benefits of living in a vegetated, compared with non-vegetated, enclosure in male Japanese macaques (Macaca fuscata)

description: Behavioral data taken from two types of enclosures.
DOI: 10.6084/m9.figshare.16853245.v1
title: Costs and benefits of living in a vegetated, compared with non-vegetated, enclosure in male Japanese macaques (Macaca fuscata)

description: Behavioral data taken from two types of enclosures.
DOI: 10.25721/w1j1-z216
title: Naissez, l'amour vous y convie
DOI: 10.25721/h20d-3777
title: Regina coco, crème à la vanille
DOI: 10.6084/m9.figshare.16853871.v1
title: Code for "Effects of Physical Impairments on Fitness Correlates of the White-footed Mouse, Peromyscus leucopus"

description: This RMD file contains the code for the analysis described in the paper.
DOI: 10.6084/m9.figshare.16853871
title: Code for "Effects of Physical Impairments on Fitness Correlates of the White-footed Mouse, Peromyscus leucopus"

description: This RMD file contains the code for the analysis described in the paper.
DOI: 10.5281/zenodo.5591768
title: Final backup (master data from ICT skill test databases)

description: Final backup (master data from ICT skill test databases)
description: Backup
DOI: 10.5281/zenodo.5591767
title: Final backup (master data from ICT skill test databases)

description: Final backup (master data from ICT skill test databases)
description: Backup
DOI: 10.5282/ubm/data.240
title: Exceptionally High Emplacement Rate of the Afar Mantle Plume Head

description: Supplementary data
DOI: 10.25721/cj82-r754
title: Joseph mon cher fidèle
DOI: 10.6084/m9.figshare.16847830
title: Financial inclusion, microfinance, and economic growth

description: The dataset is described the financial inclusion variable (computed by the authors), the microfinance, and the economic growth for 91 developing countriesThe data sources: WDI, GFDD, Mix Market
DOI: 10.6084/m9.figshare.16847830.v2
title: Financial inclusion, microfinance, and economic growth

description: The dataset is described the financial inclusion variable (computed by the authors), the microfinance, and the economic growth for 91 developing countriesThe data sources: WDI, GFDD, Mix Market
DOI: 10.6084/m9.figshare.16847830.v1
title: Financial inclusion, microfinance, and economic growth

description: The dataset is described the financial inclusion variable (computed by the authors), the microfinance, and the economic growth for 91 developing countriesThe data sources: WDI, GFDD, Mix Market
DOI: 10.25721/gseh-z202
title: Crèche : veillée de noël chez Madame Firmaine Albert. Air instrumental avec l'accordéon et le triangle
DOI: 10.6084/m9.figshare.16553079
title: AnimalsData.xlsx

description: Raw data collected on lorises at the Japan Monkey Centre.
DOI: 10.6084/m9.figshare.16553079.v1
title: AnimalsData.xlsx

description: Raw data collected on lorises at the Japan Monkey Centre.
DOI: 10.25721/nrem-3s49
title: Allez oh venez voir les bergères
DOI: 10.25721/z93p-3506
title: J'ai couru dans des hameaux