cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11703918
title: PoIT 1645 - Locations

description: This dataset contains a list of all locations mentioned in 1645 year's gazette Post- och Inrikes Tidningar(Swedish for "Post and Domestic Times"). Each edition has gotten the location for where it were summarized marked. From the result one can for example visualize the diplomatic presence of Sweden in Hamburg, the Swedish control over Wismar, and the post station in Markaryd.<br>Not all editions has a location of summary marked. This is often caused by the summary being written from temporary military camps which locations remains unknown.<br><br>This dataset is based previous work found at oldnews.peterkrantz.se.
DOI: 10.6084/m9.figshare.11703267
title: Transcriptome-wide-scale-predicted dsRNAs potentially involved in RNA homoeostasis are remarkably excluded from genes with no/very low expression in all developmental stages

description: RNA interference (RNAi) refers to a conserved posttranscriptional mechanism for the degradation of RNA by short dsRNAs. A genome-wide analysis of mRNAs that are complementary to RNAs of variable length that are transcribed from the full transcriptome and susceptible to being loaded onto <i>Argonaute</i> type 2 was performed through computational searches in the <i>Drosophila</i> model. We report the segments of RNAs that are complementary to mRNAs originating from introns, the exons of mRNAs and lncRNAs as a potential source of siRNAs. A full catalogue of the mRNAs that fulfill these criteria is presented, along with the quantification of multiple annealing. The catalogue was assessed for biological validation using three published lists: two for <i>Ago2</i>-associated RNAs and one for dsRNAs isolated from a crude extract. A broad spectrum of mRNAs were found to theoretically form intermolecular segmental dsRNAs, which should qualify them as <i>Dicer/Ago2</i> substrates if they exist in vivo. These results suggest a genome-wide scale of mRNA homoeostasis via RNAi metabolism and could extend the known roles of canonical miRNAs and hairpin RNAs. The distribution of the genes for which transcripts are engaged in intermolecular segmental pairing is largely lacking in the gene collections defined as showing no expression in each individual developmental stage from early embryos to adulthood. This trend was also observed for the genes showing very low expression from the 8-12-hour embryonic to larval stage 2. This situation was also suggested by the 3 lists generated with minimal 20-, 25- and 30-base pairing lengths.
DOI: 10.6084/m9.figshare.11703918.v1
title: PoIT 1645 - Locations

description: This dataset contains a list of all locations mentioned in 1645 year's gazette Post- och Inrikes Tidningar(Swedish for "Post and Domestic Times"). Each edition has gotten the location for where it were summarized marked. From the result one can for example visualize the diplomatic presence of Sweden in Hamburg, the Swedish control over Wismar, and the post station in Markaryd.<br>Not all editions has a location of summary marked. This is often caused by the summary being written from temporary military camps which locations remains unknown.<br><br>This dataset is based previous work found at oldnews.peterkrantz.se.
DOI: 10.6084/m9.figshare.11703267.v2
title: Transcriptome-wide-scale-predicted dsRNAs potentially involved in RNA homoeostasis are remarkably excluded from genes with no/very low expression in all developmental stages

description: RNA interference (RNAi) refers to a conserved posttranscriptional mechanism for the degradation of RNA by short dsRNAs. A genome-wide analysis of mRNAs that are complementary to RNAs of variable length that are transcribed from the full transcriptome and susceptible to being loaded onto <i>Argonaute</i> type 2 was performed through computational searches in the <i>Drosophila</i> model. We report the segments of RNAs that are complementary to mRNAs originating from introns, the exons of mRNAs and lncRNAs as a potential source of siRNAs. A full catalogue of the mRNAs that fulfill these criteria is presented, along with the quantification of multiple annealing. The catalogue was assessed for biological validation using three published lists: two for <i>Ago2</i>-associated RNAs and one for dsRNAs isolated from a crude extract. A broad spectrum of mRNAs were found to theoretically form intermolecular segmental dsRNAs, which should qualify them as <i>Dicer/Ago2</i> substrates if they exist in vivo. These results suggest a genome-wide scale of mRNA homoeostasis via RNAi metabolism and could extend the known roles of canonical miRNAs and hairpin RNAs. The distribution of the genes for which transcripts are engaged in intermolecular segmental pairing is largely lacking in the gene collections defined as showing no expression in each individual developmental stage from early embryos to adulthood. This trend was also observed for the genes showing very low expression from the 8-12-hour embryonic to larval stage 2. This situation was also suggested by the 3 lists generated with minimal 20-, 25- and 30-base pairing lengths.
DOI: 10.6084/m9.figshare.11703267.v1
title: Transcriptome-wide-scale-predicted dsRNAs potentially involved in RNA homeostasis are remarkably excluded from genes with no/very low expression in all developmental stages.

description: RNA interference (RNAi) refers to a conserved posttranscriptional mechanism for the degradation of RNA by short dsRNAs. A genome-wide analysis of mRNAs that are complementary to RNAs of variable length that are transcribed from the full transcriptome and susceptible to being loaded onto <i>Argonaute</i> type 2 was performed through computational searches in the <i>Drosophila</i> model. We report the segments of RNAs that are complementary to mRNAs originating from introns, the exons of mRNAs and lncRNAs as a potential source of siRNAs. A full catalog of the mRNAs that fulfill these criteria is presented, along with the quantification of multiple annealing. The catalog was assessed for biological validation using three published lists: two for <i>Ago2</i>-associated RNAs and one for dsRNAs isolated from a crude extract. A broad spectrum of mRNAs were found to theoretically form intermolecular segmental dsRNAs, which should qualify them as <i>Dicer/Ago2</i> substrates if they exist in vivo. These results suggest a genome-wide scale of mRNA homeostasis via RNAi metabolism and could extend the known roles of canonical miRNAs and hairpin RNAs. The distribution of the genes for which transcripts are engaged in intermolecular segmental pairing is largely lacking in the gene collections defined as showing no expression in each individual developmental stage from early embryos to adulthood. This trend was also observed for the genes showing very low expression from the 8-12-hour embryonic to larval stage 2. This situation was also suggested by the 3 lists generated with minimal 20-, 25- and 30-base pairing lengths.
DOI: 10.6084/m9.figshare.11702430
title: wild_olive_case_by_case.tar.gz

description: Multiple sequence alignments and phylogenetic trees for 10 randomly selected predictions.
DOI: 10.6084/m9.figshare.11702436
title: wild_olive_predictions.txt

description: Predictions with additional details.
DOI: 10.6084/m9.figshare.11702430.v1
title: wild_olive_case_by_case.tar.gz

description: Multiple sequence alignments and phylogenetic trees for 10 randomly selected predictions.
DOI: 10.6084/m9.figshare.11702436.v1
title: wild_olive_predictions.txt

description: Predictions with additional details.
DOI: 10.6084/m9.figshare.11702427
title: wild_olive_simulations.tar.gz

description: Results on the artificially fragmented cases with details on the cases tested and corresponding putative homologous families.
DOI: 10.6084/m9.figshare.11702427.v1
title: wild_olive_simulations.tar.gz

description: Results on the artificially fragmented cases with details on the cases tested and corresponding putative homologous families.
DOI: 10.6084/m9.figshare.11702412
title: Supplementary file

description: Environmental contamination<br>
DOI: 10.6084/m9.figshare.11702412.v1
title: Supplementary file

description: Environmental contamination<br>
DOI: 10.6084/m9.figshare.11702403
title: Ray-casting method datasets

description: The dataset used in the paper "GPU-accelerated ray-casting for 3D fiber orientation analysis"<br>Polymer datasets: sample1_8bit_256x256x256, sample3_8bit_256x256x256
DOI: 10.6084/m9.figshare.11702403.v1
title: Ray-casting method datasets

description: The dataset used in the paper "GPU-accelerated ray-casting for 3D fiber orientation analysis"<br>Polymer datasets: sample1_8bit_256x256x256, sample3_8bit_256x256x256
DOI: 10.6084/m9.figshare.11702073
title: Metadata record for: An automatically curated first-principles database of ferroelectrics

description: This dataset contains key characteristics about the data described in the Data Descriptor An automatically curated first-principles database of ferroelectrics. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11702076
title: Patient 3

description: Premature Ventricular Contraction patient #1Part 1 contains the raw ultrasound RF dataPart 2 contains the B-mode, multi-2D and 3D-rendered EWI activation timings
DOI: 10.6084/m9.figshare.11702073.v2
title: Metadata record for: An automatically curated first-principles database of ferroelectrics

description: This dataset contains key characteristics about the data described in the Data Descriptor An automatically curated first-principles database of ferroelectrics. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11702073.v1
title: Metadata record for: An automatically curated first-principles database of ferroelectrics

description: This dataset contains key characteristics about the data described in the Data Descriptor An automatically curated first-principles database of ferroelectrics. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11702055
title: Patient 2

description: Wolff-Parkinson-White patient #2Part 1 contains the raw ultrasound RF dataPart 2 contains the B-mode, multi-2D and 3D-rendered EWI activation timings
DOI: 10.6084/m9.figshare.11701809
title: Patient 1

description: Wolff-Parkinson-White patient #1Part 1 contains the raw ultrasound RF dataPart 2 contains the B-mode, multi-2D and 3D-rendered EWI activation timings
DOI: 10.6084/m9.figshare.11701131
title: Histologically validated scoring system for the assessment of hock burn in broilers

description: The assessment of bird-based welfare indicators plays an important role in the evaluation of bird welfare. The aim of the study was to histologically validate a visual scoring system for hock burn in broilers and to detect threshold values of a visual score to define welfare-relevant alterations in terms of mild lesions or ulcers of the hock. We collected 200 hocks of 39- to 42-day-old Ross 308 broilers after the slaughter process. Each hock was scored visually (“macro scores” 0–4) and evaluated histologically (“micro scores” 0–3), with high scores representing more severe lesions. Although we found a tendency for higher micro scores with increasing macro scores, an exact allocation of macro to micro scores was not possible. For example, macro score 1 could represent micro scores 1, 2 and 3, whereas macro scores 3 and 4 always represented micro score 3 (ulcer). The conditional probability of certain micro scores for given macro scores was estimated using a multinomial logistic regression model. Ulcer showed the highest probability at macro score 1, whereas mild lesions were not found to have an estimated highest probability at any macro score. The depth of inflammation of hock burn lesions increased with increasing macro scores up to macro score 3 with an average depth of 1019 µm. Visually more severe and deeper lesions were also histologically rated with higher scores. Thus, considering limitations, the herein validated macroscopic assessment scheme for hock burn allows an estimation of histological alterations in hocks of broilers. <b>RESEARCH HIGHLIGHTS</b>Histological validation of a visual assessment scheme for hock burn in broilers.Tendency for higher micro scores with increasing macro scores.Estimation of histological score via macro score possible with limitations.Histological depth of inflammation increased with an increasing macro score. Histological validation of a visual assessment scheme for hock burn in broilers. Tendency for higher micro scores with increasing macro scores. Estimation of histological score via macro score possible with limitations. Histological depth of inflammation increased with an increasing macro score.
DOI: 10.6084/m9.figshare.11701131.v1
title: Histologically validated scoring system for the assessment of hock burn in broilers

description: The assessment of bird-based welfare indicators plays an important role in the evaluation of bird welfare. The aim of the study was to histologically validate a visual scoring system for hock burn in broilers and to detect threshold values of a visual score to define welfare-relevant alterations in terms of mild lesions or ulcers of the hock. We collected 200 hocks of 39- to 42-day-old Ross 308 broilers after the slaughter process. Each hock was scored visually (“macro scores” 0–4) and evaluated histologically (“micro scores” 0–3), with high scores representing more severe lesions. Although we found a tendency for higher micro scores with increasing macro scores, an exact allocation of macro to micro scores was not possible. For example, macro score 1 could represent micro scores 1, 2 and 3, whereas macro scores 3 and 4 always represented micro score 3 (ulcer). The conditional probability of certain micro scores for given macro scores was estimated using a multinomial logistic regression model. Ulcer showed the highest probability at macro score 1, whereas mild lesions were not found to have an estimated highest probability at any macro score. The depth of inflammation of hock burn lesions increased with increasing macro scores up to macro score 3 with an average depth of 1019 µm. Visually more severe and deeper lesions were also histologically rated with higher scores. Thus, considering limitations, the herein validated macroscopic assessment scheme for hock burn allows an estimation of histological alterations in hocks of broilers. <b>RESEARCH HIGHLIGHTS</b>Histological validation of a visual assessment scheme for hock burn in broilers.Tendency for higher micro scores with increasing macro scores.Estimation of histological score via macro score possible with limitations.Histological depth of inflammation increased with an increasing macro score. Histological validation of a visual assessment scheme for hock burn in broilers. Tendency for higher micro scores with increasing macro scores. Estimation of histological score via macro score possible with limitations. Histological depth of inflammation increased with an increasing macro score.
DOI: 10.6084/m9.figshare.11699241
title: Mapping of Quantitative Trait Loci for Traits linked to Fusarium Head Blight In Barley (dataset).

description: The archive contains data and related metadata underlying the findings reported in [1], formatted as an ISA-Tab dataset compliant with MIAPPE reporting standard.<br>[1] Ogrodowicz P. et al. Mapping of Quantitative Trait Loci for Traits linked to Fusarium Head Blight In Barley. Plos ONE (2020).<br>
DOI: 10.6084/m9.figshare.11699241.v1
title: Mapping of Quantitative Trait Loci for Traits linked to Fusarium Head Blight In Barley (dataset).

description: The archive contains data and related metadata underlying the findings reported in [1], formatted as an ISA-Tab dataset compliant with MIAPPE reporting standard.<br>[1] Ogrodowicz P. et al. Mapping of Quantitative Trait Loci for Traits linked to Fusarium Head Blight In Barley. Plos ONE (2020).<br>
DOI: 10.6084/m9.figshare.11698986
title: Metadata record for: High dielectric ternary oxides from crystal structure prediction and high-throughput screening

description: This dataset contains key characteristics about the data described in the Data Descriptor High dielectric ternary oxides from crystal structure prediction and high-throughput screening. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11698836
title: fec1.zip

description: The 16S rRNA gene sequences in feces and ileum mucosa of chicken.<br>
DOI: 10.6084/m9.figshare.11698986.v2
title: Metadata record for: High dielectric ternary oxides from crystal structure prediction and high-throughput screening

description: This dataset contains key characteristics about the data described in the Data Descriptor High dielectric ternary oxides from crystal structure prediction and high-throughput screening. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11698986.v1
title: Metadata record for: High dielectric ternary oxides from crystal structure prediction and high-throughput screening

description: This dataset contains key characteristics about the data described in the Data Descriptor High dielectric ternary oxides from crystal structure prediction and high-throughput screening. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.11698836.v1
title: fec1.zip

description: The 16S rRNA gene sequences in feces and ileum mucosa of chicken.<br>
DOI: 10.21942/uva.11698620
title: Dataset for Yang et al. Lithology and climate-controlled soil aggregate-size distribution and organic carbon stability in the Peruvian Andes, SOIL, 2020.

description: Dataset 3A: It is the dataset of soil organic carbon stocks of the total soil profile and assessed to the depths from 10 to 60 cm. Soil samples were collected from 12 sampling plots based the combination of two contrasting bedrocks (limestone vs. acid rock) and two precipitation levels (wet vs. dry), having 3 replicates for each combination.<br>Dataset 3B: It is the dataset of the distributions of fraction weight, SOC contents and N contents of different-sized soil aggregates. Soil samples were collected from 12 sampling plots based on two precipitation levels (wet and dry sites) and two contrasting bedrocks (limestone and acid igneous rocks). The dataset are used to investigate how lithology and precipitation affect aggregate size and the distribution of fraction weight and C, N contents through different aggregate fractions.<br>Dataset 3C: It is the dataset of SOC mineralization rate for a 76-day incubation of intact versus crushed aggregates (large and small macroaggregates). SOC mineralization were measured in the days of 1, 2, 6, 9, 13, 20, 28, 48 and 76. Soil samples were collected from 12 sampling plots based on two precipitation levels (wet and dry sites) and two contrasting bedrocks (limestone and acid igneous rocks). The dataset are used to investigate how lithology, precipitation and aggregate destruction affect SOC mineralization.
DOI: 10.21942/uva.11698620.v1
title: Dataset for Yang et al. Lithology and climate-controlled soil aggregate-size distribution and organic carbon stability in the Peruvian Andes, SOIL, 2020.

description: Dataset 3A: It is the dataset of soil organic carbon stocks of the total soil profile and assessed to the depths from 10 to 60 cm. Soil samples were collected from 12 sampling plots based the combination of two contrasting bedrocks (limestone vs. acid rock) and two precipitation levels (wet vs. dry), having 3 replicates for each combination.<br>Dataset 3B: It is the dataset of the distributions of fraction weight, SOC contents and N contents of different-sized soil aggregates. Soil samples were collected from 12 sampling plots based on two precipitation levels (wet and dry sites) and two contrasting bedrocks (limestone and acid igneous rocks). The dataset are used to investigate how lithology and precipitation affect aggregate size and the distribution of fraction weight and C, N contents through different aggregate fractions.<br>Dataset 3C: It is the dataset of SOC mineralization rate for a 76-day incubation of intact versus crushed aggregates (large and small macroaggregates). SOC mineralization were measured in the days of 1, 2, 6, 9, 13, 20, 28, 48 and 76. Soil samples were collected from 12 sampling plots based on two precipitation levels (wet and dry sites) and two contrasting bedrocks (limestone and acid igneous rocks). The dataset are used to investigate how lithology, precipitation and aggregate destruction affect SOC mineralization.
DOI: 10.6084/m9.figshare.11698605
title: Romanian bee pollen classification and property modelling

description: The 4000–400 cm<sup>−1</sup> spectral information obtained by FTIR-ATR for bee pollen samples of different floral origin from various Romanian counties were used to formulate a method for rapid classification using principal component analysis (PCA) and linear discriminant analysis (LDA) as multivariate statistics tools. Entire IR range spectra were used as input data in both techniques. PCA reduced the problem dimensionality and put in evidence the presence of outliers. LDA, applied for samples characterized by the first 11 principal components (PCA-LDA), clearly separated 10 groups according to botanical and geographical origin, thus representing a base for developing an identification tool of the new pollen samples origin. Furthermore, spectral information and previously determined properties (polyphenols, flavonoids, sugars, proteins) were tested for identifying polynomial correlations using partial least squares (PLS) technique. The good correlation coefficients, R<sup>2</sup> &gt; 0.97, and low mean errors in both training and testing stages proved that a FTIR-ATR spectrum provides key information for rapid screening of bee pollen in terms of the parameters significant for its nutritional labelling.