cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1405548
title: Evolution Of Cosmic Star Formation In The Scuba-2 Cosmology Legacy Survey

description: This dataset consists of tabulated data from the figures included in the referenced publication. The following datasets are included:

Stacked SFR obscuration (IRX=IR/UV) of UVJ-selected star-forming galaxies:


	Weighted mean IRX as a function of Muv & stellar mass (Figure 12):  MUV_irx1.dat
	Weighted mean IRX as a function of beta, over all masses and redshifts:  beta_irx.dat
	Weighted mean IRX as a function of beta, binned by stellar mass (Figure 13):  beta_irx_mstar.dat
	Weighted mean IRX as a function of beta, binned by redshift (Figure 14):   beta_irx_z.dat


Cosmic SFR density as a function of redshift for massive galaxies log(Ms/Msol)&gt;10 (Figure 15):


	All mass-selected galaxies:  sfrd_massive.dat
	UV-luminous galaxies Muv&lt;M*; log(Ms/Msol)&gt;10:  sfrd_hiLUV.dat
	IR-luminous galaxies detected at 450µm:  sfrd_IRdet.dat


 

Cosmic SFR density as a function of redshift corrected to all stellar masses (Figure 16):


	All mass-selected galaxies:  sfrd_uvlfcorr.dat
	UV-luminous galaxies Muv&lt;M*; log(Ms/Msol)&gt;10:  sfrd_hiLUV_uvlfcorr.dat


Full details of the binning and stacking methodology are explained in the paper.
description: If using this data, please cite the paper linked under "Related Identifiers"
description: {"references": ["Bourne, Nathan et al. (2017) Monthly Notices of the Royal Astronomical Society, 467, 1360"]}
DOI: 10.18430/m35t1q
title: X-ray diffraction data for the 2.15 Angstrom Crystal Structure of N-acetylmuramoyl-L-alanine Amidase from Staphylococcus aureus. (5T1Q)
DOI: 10.18430/m35t8k
title: X-ray diffraction data for the 1.95 Angstrom Crystal Structure of S-adenosylhomocysteinase from Cryptosporidium parvum in Complex with Adenine and NAD (5T8K)
DOI: 10.18430/m35tj9
title: X-ray diffraction data for the 2.6 Angstrom Crystal Structure of S-adenosylhomocysteinase from Cryptosporidium parvum in Complex with Aristeromycin and NAD (5TJ9)
DOI: 10.18430/m35tkw
title: X-ray diffraction data for the 1.35 Angstrom Resolution Crystal Structure of a Pullulanase-specific Type II Secretion System Integral Cytoplasmic Membrane Protein GspL (N-terminal fragment; residues 1-237) from Klebsiella pneumoniae. (5TKW)
DOI: 10.18430/m35tr3
title: X-ray diffraction data for the 2.5 Angstrom Resolution Crystal Structure of Dihydrolipoyl Dehydrogenase from Pseudomonas putida in Complex with FAD. (5TR3)
DOI: 10.18430/m35tro
title: X-ray diffraction data for the 1.8 Angstrom Resolution Crystal Structure of Dimerization and Transpeptidase domains (residues 39-608) of Penicillin-Binding Protein 1 from Staphylococcus aureus. (5TRO)
DOI: 10.18430/m35t1v
title: X-ray diffraction data for the crystal structure of Zika virus NS2B-NS3 protease in apo-form. (5T1V)
DOI: 10.18430/m35tls
title: X-ray diffraction data for the 2.4 Angstrom Crystal Structure of S-adenosylhomocysteinase from Cryptosporidium parvum in Complex with DZ2002 and NAD (5TLS)
DOI: 10.18430/m35tpi
title: X-ray diffraction data for the 1.47 Angstrom Crystal Structure of the C-terminal Substrate Binding Domain of LysR Family Transcriptional Regulator from Klebsiella pneumoniae. (5TPI)
DOI: 10.18430/m35tpm
title: X-ray diffraction data for the 2.8 Angstrom Crystal Structure of the C-terminal Dimerization Domain of Transcriptional Regulator PdhR from Escherichia coli. (5TPM)
DOI: 10.5281/zenodo.2267924
title: Comparison of re-called Albacore and Flappie sequences from E. coli K-12 MG1655

description: I used the first few (545) original Fast5 files from Nick Loman's ultra-long read E. coli K-12 MG1655 R9.4 sequencing run. See the blog post here. Direct link to the complete fast5 dataset here.

Program versions:

* Albacore 2.1.10

* Flappie 1.0.0-0048dfd

The example alignment was carried out using seaview (1:4.6.1.2-2), and visualised using spiralign from my bioinfscripts repository (see source code in this archive):

    $ spiralign.r -size 2000x2000 -noalign -noborder -loops 12.75 -outfmt png -type nucl -title "Flappie vs Albacore\n(Ecoli_MG1655)" aligned_all_ddea.fa

Flappie was distributed across multiple processing threads using GNU parallel:

    $ ls Ecoli_MinKNOW_1.4_RAD002_Sambrook/0/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch* | parallel --group -j 10 -L 1 ~/install/flappie/flappie | gzip &gt; called_flappie_Ecoli_MinKNOW_1.4_RAD002_Sambrook.fq.gz

 

Tange (2011): GNU Parallel - The Command-Line Power Tool, ;login: The USENIX Magazine, February 2011:42-47.
DOI: 10.5517/ccdc.csd.cc218ktq
title: CCDC 1885073: Experimental Crystal Structure Determination

description: Related Article: Chen Wanyao|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17037/data.00000705
title: Data for "Effect of a school-based hygiene behavior change campaign on handwashing with soap in Bihar, India: cluster-randomized trial"

description: Data collected for the Evaluation of a school-based hygiene behavior change campaign on handwashing with soap in Bihar, India. The data contain observation of hygiene behaviours which were the campaign target. Each row is one observed event. Variables include: number of men, women & children living in each household, level of education, item ownership (beds, mattresses, electricity, chairs, stove, table, working fan, working TV, bicycles, cars, motorbikes, mobile phones), access to latrine and drinking water, and other details.
DOI: 10.7910/dvn/epvrug
title: testset

description: test data
DOI: 10.7910/dvn/epvrug/tmxi4i
title: person_geo.js
DOI: 10.13019/m2k01t
title: Africa Maize 2

description: Africa Maize files
DOI: 10.5281/zenodo.2247453
title: Visites L1 SCD de Tours

description: Le SCD de Tours s'est engagé dans une réflexion sur la ludification des visites, proposées aux étudiants de L1, des bibliothèques universitaires de Droit, Lettres et Sciences. Un groupe d'une dizaine de formateurs a travaillé à l'élaboration et à la mise en place de ces visites nouvelle formule sous la forme de jeux. Les collègues ont été formés et accompagnés dans leur démarche par Cécile Swiatek.

Ces visites, intégrées à l'offre de formation de l'université, ont été testées sur une cohorte de 3500 étudiants à la rentrée 2018. Les étudiants ont circulé, en autonomie, par petits groupes, dans les BU, et se sont ainsi familiarisés avec les espaces, les services et l'utilisation du catalogue de la BU.

Les retours sont très positifs, tant au niveau des étudiants qu'au niveau des collègues. Les étudiants ont particulièrement apprécié le côté ludique, le fait d'être en équipe, de pouvoir échanger avec les camarades de leur promo, et le côté découverte des locaux, des services et du catalogue. Les personnels des bibliothèques ont été plus nombreux à participer à ces visites, et ont notamment apprécié les échanges avec les étudiants, ainsi que le fait de se positionner en tant qu'animateur de la séance.

Les supports proposés ici sont destinés à évoluer pour la rentrée 2019.
DOI: 10.5281/zenodo.2247454
title: Visites L1 SCD de Tours

description: Le SCD de Tours s'est engagé dans une réflexion sur la ludification des visites, proposées aux étudiants de L1, des bibliothèques universitaires de Droit, Lettres et Sciences. Un groupe d'une dizaine de formateurs a travaillé à l'élaboration et à la mise en place de ces visites nouvelle formule sous la forme de jeux. Les collègues ont été formés et accompagnés dans leur démarche par Cécile Swiatek.

Ces visites, intégrées à l'offre de formation de l'université, ont été testées sur une cohorte de 3500 étudiants à la rentrée 2018. Les étudiants ont circulé, en autonomie, par petits groupes, dans les BU, et se sont ainsi familiarisés avec les espaces, les services et l'utilisation du catalogue de la BU.

Les retours sont très positifs, tant au niveau des étudiants qu'au niveau des collègues. Les étudiants ont particulièrement apprécié le côté ludique, le fait d'être en équipe, de pouvoir échanger avec les camarades de leur promo, et le côté découverte des locaux, des services et du catalogue. Les personnels des bibliothèques ont été plus nombreux à participer à ces visites, et ont notamment apprécié les échanges avec les étudiants, ainsi que le fait de se positionner en tant qu'animateur de la séance.

Les supports proposés ici sont destinés à évoluer pour la rentrée 2019.
DOI: 10.5517/ccdc.csd.ccvl79y
title: CCDC 792090: Experimental Crystal Structure Determination

description: Related Article: B.Ivanova, M. Spiteller|2019|Mass Spectrometric Experimental and Theoretical Quantification of Reaction Kinetics, Thermodynamics|48|1|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccvl7l7
title: CCDC 792099: Experimental Crystal Structure Determination

description: Related Article: B.Ivanova, M. Spiteller|2019|Mass Spectrometric Experimental and Theoretical Quantification of Reaction Kinetics, Thermodynamics|48|1|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zrtzj
title: CCDC 1840159: Experimental Crystal Structure Determination

description: Related Article: Gayathri Kollamaram, Alexandra Faucher, Matteo. Lusi, Denise M. Croker, Gavin M. Walker|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zx0jf
title: CCDC 1844175: Experimental Crystal Structure Determination

description: Related Article: Jia Yuan,  Wai-Pong To,  Zi-Yang Zhang,  Chang-Duo Yue,  Sixuan Meng,  Jian Chen,  Yungen Liu,  Guang-Ao Yu,  Chi-Ming Che|2018|Org.Lett.|20|7816|doi:10.1021/acs.orglett.8b03265
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3886/icpsr00017.v2
title: Census of Governments, 1962 and 1967
title: Version 2

description: This study contains economic and employment data at the county level for states and local governments in the United States in 1962 and 1967. Data are provided on total population, land area, general revenues, number of municipalities and local governments of all types, number of public school districts, and number of employees of local governments. Information is also provided on educational payrolls of local governments, average earnings of full-time teachers, water supply revenues and expenditures of local governments, local government general expenditures on public welfare, highways, health and hospitals, police and fire protection, natural resources, and urban renewal, long-term general debt outstanding of local schools and local governments, and per capita intergovernmental revenues and expenditures.
description: 1962: 132 variables; 3173 cases; 
1967: 57 variables; 3471 cases;
description: ICPSR data undergo a confidentiality review and are altered when necessary to limit the risk of 
				disclosure. ICPSR also routinely creates ready-to-go data files along with setups in the major 
				statistical software formats as well as standard codebooks to accompany the data. In addition to 
				these procedures, ICPSR performed the following processing steps for this data collection:
			   		Created variable labels and/or value labels.; Standardized missing values..
description: Response Rates: 
					Not provided.
description: Datasets: 
					
						DS0: Study-Level Files
						DS1: 1962
						DS2: 1967
description: Census of Governments Series
description: States, county, and local governments in the United States in 1962 and 1967.
				   		Smallest Geographic Unit: State
DOI: 10.5517/ccdc.csd.cc20990n
title: CCDC 1855970: Experimental Crystal Structure Determination

description: Related Article: Ting Yi Lai, Jing-Dong Guo, James C. Fettinger, Shigeru Nagase, Philip P. Power|2018|Chem.Commun.|55|405|doi:10.1039/C8CC08488B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20jj8c
title: CCDC 1862922: Experimental Crystal Structure Determination

description: Related Article: Mark R. Ams, Nils Trapp, Anatol Schwab, Jovana V. Milić, François Diederich|2019|Chem.-Eur.J.|25|323|doi:10.1002/chem.201804261
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20jj9d
title: CCDC 1862923: Experimental Crystal Structure Determination

description: Related Article: Mark R. Ams, Nils Trapp, Anatol Schwab, Jovana V. Milić, François Diederich|2019|Chem.-Eur.J.|25|323|doi:10.1002/chem.201804261
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20jjbf
title: CCDC 1862924: Experimental Crystal Structure Determination

description: Related Article: Mark R. Ams, Nils Trapp, Anatol Schwab, Jovana V. Milić, François Diederich|2019|Chem.-Eur.J.|25|323|doi:10.1002/chem.201804261
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20jjcg
title: CCDC 1862925: Experimental Crystal Structure Determination

description: Related Article: Mark R. Ams, Nils Trapp, Anatol Schwab, Jovana V. Milić, François Diederich|2019|Chem.-Eur.J.|25|323|doi:10.1002/chem.201804261
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20jjdh
title: CCDC 1862926: Experimental Crystal Structure Determination

description: Related Article: Mark R. Ams, Nils Trapp, Anatol Schwab, Jovana V. Milić, François Diederich|2019|Chem.-Eur.J.|25|323|doi:10.1002/chem.201804261
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15151/esrf-es-115658541
title: High-Resolution Structure of Full-Length FtsH, an ATP-Dependent Integral Membrane Protease
DOI: 10.5281/zenodo.2274921
title: Middle Dutch syllabified words

description: <strong>Specifics of the data:</strong>


	Text file containing 43,710 syllabified Middle Dutch words, taken from the <em>Corpus Van Reenen-Mulder</em>. This corpus, created by Pieter van Reenen en Maaike Mulder at the Free University Amsterdam, contains about 2,500 Middle Dutch charters. It has about 750,000 tokens. The charters were written in the Netherlands and Flanders between 1300 and 1400.
	The 43,710 syllabified words in this list is the total amount of unique words from the <em>Corpus Van Reenen-Mulder</em>. Some tokens from this corpus were, however, excluded when assembling the data set due to the fact that they contained diacritic symbols to indicate abbreviations, clitics, or unclear parts in the original charter.
	A dash-symbol (-) is used as separator.
	Apart from the entire data set, this DOI also includes:
	
		A pdf-file visualizing the data set
		The splits used for the automatic syllabification experiment by Haverals, Kestemont & Karsdorp (2018).
description: {"references": ["Gosse Bouma & Ben Hermans. Syllabification of Middle Dutch. In F. Mambrini, M. Passarotti, and C. Sporleder, editors, Proceedings of the Second Workshop on Annotation of Corpora for Research in the Humanities, pp. 27-39, 2012.", "Pieter van Reenen & Maaike Mulder. Een gegevensbank van 14de- eeuwse Middelnederlandse dialecten op computer. Lexikos 3, pp. 259-281, 1993."]}
DOI: 10.6073/pasta/f07521905bd19344758b6a75e195b415
title: Assessing Plant Phenological Patterns in the Eastern United States Over the Last 120 Years

description: Phenology is a key biological trait of an organism’s success and is one of the best indicators of its response to recent climate change. Plants are among the most well-studied organisms in this regard, but observational data bearing on this topic are largely restricted to woody species of the northern hemisphere, mostly from ca. the last three decades. Recent research has demonstrated that mobilized online herbarium specimens provide important, albeit mostly neglected, information on plant phenology. Here, we use the web tool CrowdCurio to crowdsource phenological data from more than 10,000 herbarium specimens representing 30 flowering plant species broadly distributed across the eastern United States. Our results, spanning 120 years and generated from over 2,000 crowdsourcers, clarify numerous aspects of plant phenology. First, they reveal that plant reproductive phenology is significantly advancing in response to warming, which is consistent with previous studies. Second, among those species with broad latitudinal ranges, populations from more southern latitudes are significantly more phenologically sensitive to temperature than those from northern populations. Last, contrary to some recent findings, plants in warmer, less variable climates may be much more dynamic, on average, in their phenological sensitivity. Our results are robust to a variety of confounding factors and span large phylogenetic distances and myriad life histories. These may represent more global trends in the latitudinal gradient of phenological response with myriad potential ecological and evolutionary consequences, and leads us to hypothesize that phenological sensitivity across species' ranges is driven by adaptation to local climates.
DOI: 10.5517/ccdc.csd.cc1znmw4
title: CCDC 1837087: Experimental Crystal Structure Determination

description: Related Article: Yueji Chen, Yi You, Zhiqiang Weng|2018|Org.Chem.Front.|6|213|doi:10.1039/C8QO01118D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5258/soton/d0635
title: Data for Understanding the charge storage mechanism of conductive polymers as hybrid battery-capacitor material in ionic liquids by in-situ atomic force microscopy and electrochemical quartz crystal microbalance

description: Raw data for the cyclic voltammetry and atomic force microscopy  in the paper "Understanding the charge storage mechanism of conductive polymers as hybrid battery-capacitor material in ionic liquids by in-situ atomic force microscopy and electrochemical quartz crystal microbalance" Journal of Materials Chemistry A, 2018, DOI: 10.1039/C8TA06757K
DOI: 10.5517/ccdc.csd.cc20drqx
title: CCDC 1859309: Experimental Crystal Structure Determination

description: Related Article: Yueji Chen, Yi You, Zhiqiang Weng|2018|Org.Chem.Front.|6|213|doi:10.1039/C8QO01118D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.2269710
title: On the Performance of Method-Level Bug Prediction: A Negative Result. Appendix

description: Abstract Bug prediction is aimed at identifying software artifacts that are more likely to be defective. Most approaches defined so far target the prediction of bugs at class/file level. Nevertheless, past research has provided evidence that this granularity might be too coarse-grained, thus reducing the usability of bug prediction in practice. As a consequence, researchers have started proposing defect prediction models targeting a finer granularity, particularly targeting methods, providing promising evidence that it is possible to operate at this granularity. Particularly, models based on a mixture of product and process metrics provided the best results. 

In this paper, we first replicate previous research on method-level bug- prediction using different systems and timespans. Afterward, based on the limitations of existing research, we (1) re-evaluate method-level bug prediction models more realistically and (2) analyze the whether textual features— previously shown as valuable sources of information for the evaluation of software quality (yet surprisingly unexplored in this research field)—can be exploited to improve method-level bug prediction abilities. Key results of our study include that (1) the performance of the previously proposed models, tested using the same strategy but with different systems/timespans, is con- firmed. However, (2) when evaluated with a more realistic strategy all the models show a dramatic drop in performance exhibiting results close to that of a random classifier. In addition, we find that (3) the contribution of textual features within such models is limited and unable to improve the prediction capabilities significantly. As a consequence, our replication and negative results indicate that method-level bug prediction is still an open challenge.