cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29533607
title: <b>Coronaviruses remodel the mature human tRNAome to facilitate infection</b>

description: Current research on virus-host interactions primarily focuses on the transcription and translation of viral and host genes. However, there is a major knowledge gap between transcription and translation, known as translational decoding mediated by mature transfer RNAs (tRNAs) charged with amino acids. Codon usage analysis of seven human coronaviruses indicates that they are highly dissimilar from the human host. Quantification of the human tRNAome consisting of 57 species, demonstrated that infections with these coronaviruses robustly upregulate the global tRNAome landscapes in host cells. Deprivation of individual amino acids or knockdown of TRNT1, the enzyme adding 3’-ACC terminal for tRNA aminoacylation, inhibited coronavirus infection. Integrative analysis of codon usage and the tRNAome landscape identified a prominent role of tRNA-Asn-AUU in translational decoding of different human coronaviruses. Deprivation of asparagine (Asn) or knockdown of Asparaginyl-tRNA Synthetase 1, an enzyme that charges the Asn amino acid onto tRNA-Asn acceptors, including tRNA-Asn-AUU, profoundly inhibited coronavirus 229E infection, but to a much lesser extent for NL63 and SARS-CoV-2. Collectively, we demonstrated that human coronaviruses are capable of remodeling the host mature tRNAome to facilitate infection. However, the regulatory patterns and sensitivities to interference, particularly at the single amino acid or tRNA levels, vary among different coronavirus species. These findings provide a new perspective for understanding virus-host interactions.
DOI: 10.6084/m9.figshare.29533607.v1
title: The original data for tRNA

description: Current research on virus-host interactions primarily focuses on the transcription and translation of viral and host genes. However, there is a major knowledge gap between transcription and translation, known as translational decoding mediated by mature transfer RNAs (tRNAs) charged with amino acids. Codon usage analysis of seven human coronaviruses indicates that they are highly dissimilar from the human host. Quantification of the human tRNAome consisting of 57 species, demonstrated that infections with these coronaviruses robustly upregulate the global tRNAome landscapes in host cells. Deprivation of individual amino acids or knockdown of TRNT1, the enzyme adding 3’-ACC terminal for tRNA aminoacylation, inhibited coronavirus infection. Integrative analysis of codon usage and the tRNAome landscape identified a prominent role of tRNA-Asn-AUU in translational decoding of different human coronaviruses. Deprivation of asparagine (Asn) or knockdown of Asparaginyl-tRNA Synthetase 1, an enzyme that charges the Asn amino acid onto tRNA-Asn acceptors, including tRNA-Asn-AUU, profoundly inhibited coronavirus 229E infection, but to a much lesser extent for NL63 and SARS-CoV-2. Collectively, we demonstrated that human coronaviruses are capable of remodeling the host mature tRNAome to facilitate infection. However, the regulatory patterns and sensitivities to interference, particularly at the single amino acid or tRNA levels, vary among different coronavirus species. These findings provide a new perspective for understanding virus-host interactions.
DOI: 10.6084/m9.figshare.29533607.v2
title: <b>Coronaviruses remodel the mature human tRNAome to facilitate infection</b>

description: Current research on virus-host interactions primarily focuses on the transcription and translation of viral and host genes. However, there is a major knowledge gap between transcription and translation, known as translational decoding mediated by mature transfer RNAs (tRNAs) charged with amino acids. Codon usage analysis of seven human coronaviruses indicates that they are highly dissimilar from the human host. Quantification of the human tRNAome consisting of 57 species, demonstrated that infections with these coronaviruses robustly upregulate the global tRNAome landscapes in host cells. Deprivation of individual amino acids or knockdown of TRNT1, the enzyme adding 3’-ACC terminal for tRNA aminoacylation, inhibited coronavirus infection. Integrative analysis of codon usage and the tRNAome landscape identified a prominent role of tRNA-Asn-AUU in translational decoding of different human coronaviruses. Deprivation of asparagine (Asn) or knockdown of Asparaginyl-tRNA Synthetase 1, an enzyme that charges the Asn amino acid onto tRNA-Asn acceptors, including tRNA-Asn-AUU, profoundly inhibited coronavirus 229E infection, but to a much lesser extent for NL63 and SARS-CoV-2. Collectively, we demonstrated that human coronaviruses are capable of remodeling the host mature tRNAome to facilitate infection. However, the regulatory patterns and sensitivities to interference, particularly at the single amino acid or tRNA levels, vary among different coronavirus species. These findings provide a new perspective for understanding virus-host interactions.
DOI: 10.15468/dl.eqhf4p
title: Occurrence Download

description: A dataset containing 332 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "Geometry POLYGON((-180 8,180 8,180 35,-180 35,-180 8))",
 "OccurrenceStatus is Present",
 "TaxonKey is Oryza sativa"
 ]
}

 The dataset includes 332 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056655-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcgsxk
title: Occurrence Download

description: A dataset containing 624 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Glycine falcata"
 ]
}

 The dataset includes 624 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056656-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bfuru4
title: Occurrence Download

description: A dataset containing 107111 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fauna silvestre reubicada en el marco del Proyecto Hidroeléctrico Ituango"
 ]
}

 The dataset includes 107111 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056650-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/34at-vn22
title: "Dataset of Academic Staff in universities of Ethiopia"

description: "The data is gathered from the academic staff of public universities of Ethiopia. "
DOI: 10.15468/dl.tmwqs6
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Navicula aikenensis"
 ]
}

 The dataset includes 30 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056657-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/12kv-9c88
title: HST GRB250702B (Levan)

description: HST observations of the ultralong GRB250702B (PI: Levan)
DOI: 10.5281/zenodo.17442530
title: HERITАGE АND CULTURАL-ECОNОMY MАNАGEMENT IN REGIОNАL DEVELОPMENT
DOI: 10.5281/zenodo.17442529
title: HERITАGE АND CULTURАL-ECОNОMY MАNАGEMENT IN REGIОNАL DEVELОPMENT
DOI: 10.5281/zenodo.17442222
title: EcoCausality: Global Harmonized Dataset for Detecting and Attributing Biodiversity Change (2000–2023)

description: This dataset supports the study “EcoCausality: A Causal Machine Learning Framework for Detecting and Attributing Biodiversity Change Across Environmental Gradients.” It integrates globally harmonized biodiversity, climate, land-use, vegetation, and pollution variables (2000–2023) across six continents on a 10 km grid. Each observation includes temperature, precipitation, NDVI, pollution, population density, and biodiversity indices. Data were compiled from GBIF, MODIS, CHELSA, CAMS, GPWv4, and BioTIME under FAIR principles. Provided in CSV format for transparency and reproducibility. Dataset anonymized for peer review and fully open upon article acceptance.
DOI: 10.5281/zenodo.17442223
title: EcoCausality: Global Harmonized Dataset for Detecting and Attributing Biodiversity Change (2000–2023)

description: This dataset supports the study “EcoCausality: A Causal Machine Learning Framework for Detecting and Attributing Biodiversity Change Across Environmental Gradients.” It integrates globally harmonized biodiversity, climate, land-use, vegetation, and pollution variables (2000–2023) across six continents on a 10 km grid. Each observation includes temperature, precipitation, NDVI, pollution, population density, and biodiversity indices. Data were compiled from GBIF, MODIS, CHELSA, CAMS, GPWv4, and BioTIME under FAIR principles. Provided in CSV format for transparency and reproducibility. Dataset anonymized for peer review and fully open upon article acceptance.
DOI: 10.15468/dl.yhdx5g
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vipera graeca",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-26.542322 25.637500, 53.987701 25.637500, 53.987701 73.184014, -26.542322 73.184014, -26.542322 25.637500))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 24 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056658-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc285cwq
title: CCDC 2090543: Experimental Crystal Structure Determination

description: Related Article: Qi Zhang, Si‐Wei Zhou, Chang‐Yun Shi, Liang Yin|2021|Angew.Chem.,Int.Ed.|60|26351|doi:10.1002/anie.202110709
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc285glj
title: CSD 2090627: Experimental Crystal Structure Determination

description: Related Article: S. Thiyagaraj, Vishal Vrashabhanath Samaje, Nagaiah Kambhala, A. Christy Ferdinand, K. Munirathnam|2022|Appl. Phys. A: Mater. Sci. Process.|128|74|doi:10.1007/s00339-021-05179-0
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285d3z
title: CCDC 2090550: Experimental Crystal Structure Determination

description: Related Article: Geyang Song, Liu Yang, Jing‐Sheng Li, Wei‐Jun Tang, Wei Zhang, Rui Cao, Chao Wang, Jianliang Xiao, Dong Xue|2021|Angew.Chem.,Int.Ed.|60|21536|doi:10.1002/anie.202108587
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285d40
title: CCDC 2090551: Experimental Crystal Structure Determination

description: Related Article: Geyang Song, Liu Yang, Jing‐Sheng Li, Wei‐Jun Tang, Wei Zhang, Rui Cao, Chao Wang, Jianliang Xiao, Dong Xue|2021|Angew.Chem.,Int.Ed.|60|21536|doi:10.1002/anie.202108587
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285d51
title: CCDC 2090552: Experimental Crystal Structure Determination

description: Related Article: Geyang Song, Liu Yang, Jing‐Sheng Li, Wei‐Jun Tang, Wei Zhang, Rui Cao, Chao Wang, Jianliang Xiao, Dong Xue|2021|Angew.Chem.,Int.Ed.|60|21536|doi:10.1002/anie.202108587
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285db6
title: CCDC 2090557: Experimental Crystal Structure Determination

description: Related Article: Bartłomiej Rogalewicz, Małgorzata Szczesio, Ewa Poleszak, Joanna Kowalczyk, Bernadeta Szewczyk, Bruno Cury Camargo, Jacek Szczytko, Marcin Witkowski, Andrzej Fruziński, Anita Raducka, Robert Banasiak, Agnieszka Czylkowska |2021|Int.J.Mol.Sci.|22|12909|doi:10.3390/ijms222312909
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285dc7
title: CCDC 2090558: Experimental Crystal Structure Determination

description: Related Article: Bartłomiej Rogalewicz, Małgorzata Szczesio, Ewa Poleszak, Joanna Kowalczyk, Bernadeta Szewczyk, Bruno Cury Camargo, Jacek Szczytko, Marcin Witkowski, Andrzej Fruziński, Anita Raducka, Robert Banasiak, Agnieszka Czylkowska |2021|Int.J.Mol.Sci.|22|12909|doi:10.3390/ijms222312909
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285dlg
title: CCDC 2090565: Experimental Crystal Structure Determination

description: Related Article: Guang Huang|2021|Z.Kristallogr.-New Cryst.Struct.|236|1021|doi:10.1515/ncrs-2021-0204
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285dzv
title: CCDC 2090577: Experimental Crystal Structure Determination

description: Related Article: Lei Wang,  Qing-Guo Meng,  Gui-Ge Hou|2021|Z.Kristallogr.-New Cryst.Struct.|236|1023|doi:10.1515/ncrs-2021-0207
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc285fgc
title: CSD 2090592: Experimental Crystal Structure Determination

description: Related Article: Johan Cedervall, Rebecca Clulow, Hanna L.B. Boström, Deep C. Joshi, Mikael S. Andersson, Roland Mathieu, Premysl Beran, Ronald I. Smith, Jo-Chi Tseng, Martin Sahlberg, Pedro Berastegui, Samrand Shafeie|2021|J.Solid State Chem.|300|122213|doi:10.1016/j.jssc.2021.122213
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285fb7
title: CCDC 2090588: Experimental Crystal Structure Determination

description: Related Article: Lan Qin, Huan Ma, Minhui Lv, Yan Zhou, Lei Han|2023|J.Solid State Chem.|317|123660|doi:10.1016/j.jssc.2022.123660
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc281n55
title: CCDC 2086956: Experimental Crystal Structure Determination

description: Related Article: Orbett T. Alexander,  Johan Venter|2021|Z.Kristallogr.-New Cryst.Struct.|236|1039|doi:10.1515/ncrs-2021-0218
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285ftq
title: CCDC 2090603: Experimental Crystal Structure Determination

description: Related Article: Vladimir A. Motornov, Andrey A. Tabolin, Valentine G. Nenajdenko, Sema L. Ioffe|2021|Chem. Sel.|6|9969|doi:10.1002/slct.202103189
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285fws
title: CCDC 2090605: Experimental Crystal Structure Determination

description: Related Article: Vladimir A. Motornov, Andrey A. Tabolin, Valentine G. Nenajdenko, Sema L. Ioffe|2021|Chem. Sel.|6|9969|doi:10.1002/slct.202103189
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285g53
title: CCDC 2090614: Experimental Crystal Structure Determination

description: Related Article: Eimantas Duda, David Hall, Sergey Bagnich, Cameron L. Carpenter-Warren, Rishabh Saxena, Michael Y. Wong, David B. Cordes, Alexandra M. Z. Slawin, David Beljonne, Yoann Olivier, Eli Zysman-Colman, Anna Köhler|2022|J.Phys.Chem.B|126|552|doi:10.1021/acs.jpcb.1c05749
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285g64
title: CCDC 2090615: Experimental Crystal Structure Determination

description: Related Article: Eimantas Duda, David Hall, Sergey Bagnich, Cameron L. Carpenter-Warren, Rishabh Saxena, Michael Y. Wong, David B. Cordes, Alexandra M. Z. Slawin, David Beljonne, Yoann Olivier, Eli Zysman-Colman, Anna Köhler|2022|J.Phys.Chem.B|126|552|doi:10.1021/acs.jpcb.1c05749
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285g75
title: CCDC 2090616: Experimental Crystal Structure Determination

description: Related Article: Eimantas Duda, David Hall, Sergey Bagnich, Cameron L. Carpenter-Warren, Rishabh Saxena, Michael Y. Wong, David B. Cordes, Alexandra M. Z. Slawin, David Beljonne, Yoann Olivier, Eli Zysman-Colman, Anna Köhler|2022|J.Phys.Chem.B|126|552|doi:10.1021/acs.jpcb.1c05749
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27n6hm
title: CCDC 2075000: Experimental Crystal Structure Determination

description: Related Article: Idrees Sumra,  Majeed Irfan,  Huowang He,  Yihuan Zhang,  Fei Hao,  Jinhong Lin,  Atsuhiro Osuka,  Zhuo Zeng,  Hua‐Wei Jiang|2021|Eur.J.Org.Chem.|2021|4440|doi:10.1002/ejoc.202100777
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285g86
title: CCDC 2090617: Experimental Crystal Structure Determination

description: Related Article: Eimantas Duda, David Hall, Sergey Bagnich, Cameron L. Carpenter-Warren, Rishabh Saxena, Michael Y. Wong, David B. Cordes, Alexandra M. Z. Slawin, David Beljonne, Yoann Olivier, Eli Zysman-Colman, Anna Köhler|2022|J.Phys.Chem.B|126|552|doi:10.1021/acs.jpcb.1c05749
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27n6dj
title: CCDC 2074997: Experimental Crystal Structure Determination

description: Related Article: Idrees Sumra,  Majeed Irfan,  Huowang He,  Yihuan Zhang,  Fei Hao,  Jinhong Lin,  Atsuhiro Osuka,  Zhuo Zeng,  Hua‐Wei Jiang|2021|Eur.J.Org.Chem.|2021|4440|doi:10.1002/ejoc.202100777
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.