cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/kdvcbwvrxm
title: Supplementary information for 'The transfer of passive immunity in calves born at pasture' 

description: 1. Table of the detail about the farms enrolled in the study 
2. Table of detail of the STP between calves that suckled and did not suckle across the farms
3. Supplementary Figure 1. Scatterplot of hours from birth to removal at pasture and serum total protein concentrations (g/L) from blood samples collected prior to farmer feeding colostrum for each of the eight farms, and all calves combined. A locally weighted regression line is represented by a solid blue line, and the extent of the grey shaded area surrounding regression line is the 95% confidence limits of regression line. Spearman’s Rank correlation coefficient is included for each farm, and overall.
4. Supplementary Figure 2. Scatterplot of hours from birth to first suckling event at pasture and serum total protein concentrations (g/L) from blood samples collected prior to farmer feeding colostrum for each of the eight farms, and all calves combined. A locally weighted regression line is represented by a solid blue line, and the extent of the grey shaded area surrounding regression line is the 95% confidence limits of regression line.
5.Supplementary Figure 3. Scatterplot of hours from birth to first suckling event at pasture and serum total protein concentrations (g/L) from post farmer fed blood sample, collected at approximately three days of age for each of the eight farms, and all calves combined. A locally weighted regression line is represented by a solid blue line, and the extent of the grey shaded area surrounding regression line is the 95% confidence limits of regression line.
DOI: 10.17632/kv7wpzh83z
title: Market value of football clubs

description: Market capitalization of public football clubs and peremeters that supposed to be its drivers
DOI: 10.17632/z7kgyy8chp
title: Occurrence of amphibians in the Democratic People's Republic of Korea
DOI: 10.17632/63bz5hmx59
title: Data for: Does evidence support "banking/extending sleep" by shift workers to mitigate fatigue, and/or to improve health, safety, or performance? A systematic review

description: The attached file includes the records/papers reviewed in full-text format with data on the decision process for inclusion/exclusion.
DOI: 10.17632/f5xxzz2rdr
title: Molecular characterization and natural history of linear porokeratosis: a case series

description: Here we employed immunohistochemistry and genetic testing by whole-exome or Sanger sequencing, to characterize six cases with linear porokeratosis (LP), all having negative family history for porokeratosis (Table 1). Histopathologically, cornoid lamellae were present in five patients. In two cases, the proximity to eccrine gland ducts led to misinterpretation of the diagnosis that was clarified by genetic testing. Porokeratosis was accompanied by increased proliferation of basal keratinocytes without evidence for increased apoptosis, and by an inflammatory infiltrate rich in CD4 and CD8 cells in three samples that were studied (Mendely Supplemental Fig. 1). The identified mutations, PMVK c.329G&gt;A, p.R110Q and MVD c.70+5G&gt;A have been reported before. In addition, we identified the unreported variant, MVK c.943_944del, p.L315Gfs*51. Second-hits led to loss-of-heterozygosity in LP. PMKV and MVK mutations were associated with verrucous and erythematous lesions, whereas, the MVD-associated LP were superficial and less inflammatory (Figure 1). Concerning the natural history, in all patients skin lesions grew and disseminated during childhood (Mendely Supplemental Fig. 2). At the age of 50 years, the oldest case in this series developed on the LP a squamous cell carcinoma (SCC) that was excised but recurred. Although only one LP-SCC was available for analysis, we analyzed its somatic mutations looking for insights into the drivers of carcinogenesis in LP. In the LP-SCC, 100 somatic mutations were identified and included the mutational signatures 7 (UV), 1 (“clock-like”) and 13 (AID/APOBEC family of cytidine deaminases) (Mendely Supplemental Fig. 3 and Tables). There were no typical mutations found in sporadic cutaneous SCC; the variant c.533C&gt;T, p.L178S and a copy number gain were found in EP300, a gene reported to be genetically or epigenetically altered in various cancers.
DOI: 10.17632/m9z6dzg82t
title: Data for: Rethinking Solar PV Contracts in a World of Increasing Curtailment Risk

description: Modeled results for generator and electricity buyer project value under different contract structures and curtailment levels. Modeled results from augmented version of U.S. National Renewable Energy Laboratory's System Advisor Model. See paper for complete modeling assumptions.
DOI: 10.6084/m9.figshare.27617442.v1
title: Dataset for An Ultraviolet Raman Spectral Library of 21 Organic Compounds and 41 minerals for planetary exploration on Mars

description: Searching for life on Mars can help us understand the origins and evolution of life, and it has always been a primary scientific goal of Mars exploration missions by different countries. Raman spectroscopy has numerous advantages in detecting different materials, such as gathering chemical composition and crystal structure, etc., specifically, ultraviolet Raman spectroscopy which is especially suitable for identifying organic compounds has been deployed on Mars. In this study, an independent UV Raman spectroscopy system is built to explore the potential of ultraviolet Raman spectroscopy in planetary exploration and astrobiology. Based on this system, a ground-based Raman reference library was established, including 41 minerals and 21 organic compounds related to Martian biosignatures. The results indicate that the self-built UV Raman system can identify significant characteristic peaks in different materials that would provide valuable and good references for identifying organics on Mars.
DOI: 10.17632/43jwk79y6x
title: Spiritual transcendence, personal religiosity and mental health in clergy and nuns

description: The aim of the cross-sectional study was the comparison of Roman Catholic clergy and nuns (N = 140) with regard to mental health (General Health Questionnaire, GHQ-28), spiritual transcendence (Spiritual Transcendence Scale, STS) and religiousness (Personal religiousness Scale, PRS). (General Health Questionnaire, GHQ-28).
DOI: 10.6084/m9.figshare.20170952.v1
title: Winter tick, Dermacentor albipictus, occurrence dataset

description: Data associated with Chenery E.S., N.J. Harms, H. Fenton, N.E. Mandrak, and P.K. Molnár. 2022. Revealing Large-scale Parasite Ranges: An Integrated Spatio-temporal Database and Multi-source Analysis of Winter Tick. We reconstructed the past and present distribution of the winter tick, <em>Dermacentor albipictus,</em> through compilation of a spatio-temporal database to create the first full baseline map of its occurrence throughout its North American range (WTOcc_data). Over 3,400 unique records of winter tick occurrence were compiled from multiple data sources, dating from 1869 to 2020 and spanning from 16.5 to 66.2 °N latitude. Both conventional, published sources and natural-history records were included along with new records from previously unpublished datasets and citizen-science observations to make this a comprehensive occurrence dataset for this species. Along with standardized location information and year of observation, the dataset includes associated host species and descriptive categorisation of the type and source of each record, providing new opportunities to examine host-parasite interactions in the winter tick system over time and space. A comprehensive metadata file (WTOcc_metadata) explaining compilation methods and source limitations, a file containing explanatory processing notes on each source included in the database (WTOcc_source_notes), and a full citation file (WTOcc_citations) of all records included within the database are also provided. In the associated paper, we present these data and discuss the potential sampling biases and lacunas in our integrated database records, particularly at the winter tick’s northernmost range. We also document changes in the types and sources of winter tick information from past to present, highlighting potential issues that should be considered before using these data in further analyses and when collecting ongoing records.
DOI: 10.17632/6ydbk4f8kn
title: Data and Code for "Size-Adapted Bond Liquidity Measures and Their Assets Pricing Implications"

description: SAS code to calculate size-adapted bond liquidity measures.
The data set provides monthly functional forms and normalization factors that allow to calculate size-adapted liquidity measures for individual bonds without running the iterative procedure described in the paper.
DOI: 10.17632/t56n4dkrmn
title: GRACE code and simulation results for the study "Cost reduction in low-carbon hydrogen: Effective but insufficient to mitigate carbon emissions"

description: This includes the GRACE code written in GAMS and simulated results used in the study: Wei and Glomsrød (2023). Cost reduction in low-carbon hydrogen: Effective but insufficient to mitigate carbon emissions. Discover Energy Volume 3 Issue 1. DOI: 10.1007/s43937-023-00015-3.
DOI: 10.17632/wppzsm27c7
title: Capability in Supply chain performance

description: In the study identified supply chain capability such as innovation, visibility and collaboration effect on supply chain performance. Moreover, how supply chain digitization moderate those relationship. To investigate the relation among the variables, data was collected from supply chain manager and merchandising manager of apparel manufacturing industry in Bangladesh through survey mathod. The result found that innovation and visibility positively effect on SCP, where collaboration dose not effectively contribute in this industry. Similarly DSCI positively moderate relationship in SCP and (Innovativeness and Visibility). No moderating effect on SCP and collaboration.
DOI: 10.17632/sbrsnrtc7c
title: Data for: Filthy operative rooms and other mistakes during movies on neurosurgical procedures.

description: Fascinating and powerful neurosurgical scenarios presented, in different ways, to common people. How many mistakes and stereotypes can be made in movies for people not daily involved in medical life? More pictures about neurosurgical mistakes in movies!
DOI: 10.17632/v68jzts6h8
title: COMPARISON OF STRAIN COUNTERSTRAIN TECHNIQUE VERSUS MUSCLE ENERGY TECHNIQUE ON PIRIFORMIS TRIGGER POINT: A RANDOMISED CONTROLLED TRIAL

description: Present study is an interventional study. The purpose of the study is to compare strain counterstrain technique with muscle energy technique to explore the efficacy of these techniques in alleviating piriformis trigger points. Study will be conducted at Amar jyoti institute of physiotherapy (University of Delhi) in Delhi, India. The aim and objectives of the study are to identify the effect of Strain counterstrain technique versus muscle energy technique on piriformis trigger point, to investigate the efficacy of Strain counterstrain on piriformis trigger point, to investigate the efficacy of muscle energy technique on piriformis trigger point and to investigate the efficacy of strain counterstrain technique along with muscle energy technique on piriformis trigger point. The outcome measures are Grade of tenderness of piriformis trigger points, Hip internal and external range of motion.
DOI: 10.17632/zmhcvhw2x8
title: LINF_180019500

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.25062230.v1
title: combosciplex

description: Combosciplex subset of sciplex v3
DOI: 10.17632/dzfhhfh3d8
title: A highly potent bi-thiazole inhibitor of LOX rewires collagen architecture and enhances chemoresponse in triple-negative breast cancer. Cetin-Saatci et al

description: Western blot and microscopy images of the article, A highly potent bi-thiazole inhibitor of LOX rewires collagen architecture and enhances chemoresponse in triple-negative breast cancer.
DOI: 10.17632/yb36mnssp2
title: La crónica: Voz de las problemáticas sociales.

description: La crónica es una tipología narrativa que combina la investigación periodística con la narración, lo que propicia a describir problemáticas, hechos y situaciones socioculturales. La crónica como voz de las problemáticas sociales, hace parte de las notas de clase para realizarse con los estudiantes como ejercicio de análisis de problemáticas sociales.
DOI: 10.17632/bv2hvm4pmz
title: Indoor Air Quality Monitoring @ Brindisi Airport

description: The experimental dataset here represented is composed by 3 CSV files (ranging from 7M records to 11M records), each corresponding to air quality records -- related to the presence of gases (as a unified value concentration); the concentration of carbon dioxide (CO2), together with air temperature and humidity; and the concentration of particulate matter (PM) in the monitored environment (PM0.5, PM1, PM2.5, PM4, PM10) -- sampled (every 2 sec) over a 1-year period (October 2022-October 2023) in an indoor travelers’ transit area in the Brindisi airport, Italy, in the aim of the European project InSecTT (https://www.insectt.eu/, https://cordis.europa.eu/project/id/876038/). In particular, each CSV file has been generated by a prototypical Internet of Things (IoT) sensing node, designed at the IoTLab (https://iotlab.unipr.it/) of the University of Parma, Italy, exploiting a Raspberry Pi 4 (as processing unit) and three low-cost commercial sensors (namely: Adafruit MiCS5524, Sensirion SCD30, Sensirion SPS30). Then, as a time reference, each record contains the Unix-like data collection timestamp and the identity of the IoT node sampling the air parameters (for safety purposes, the association with a generic color name in the CSV file name has been a consequence of an anonymization naming process for the IoT nodes, in order to hide their precise positions inside the airside transit area).
DOI: 10.17632/hhf5fs7rbg
title: LINF_190014100

description: ATG8/AUT7/APG8/PAZ2
Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.11826321.v1
title: Additional file 3 of The effects and interaction of soybean maturity gene alleles controlling flowering time, maturity, and adaptation in tropical environments

description: Additional file 3. ANOVA tables for DTF, DTM, and yield for all RILS. Three ANOVA for agronomic traits of interest.
DOI: 10.6084/m9.figshare.28815632.v2
title: Raw Data

description: The dataset comprises the raw data derived from the experiment carried out within the research project titled "<b>Monoacylglycerol acyltransferase maintains ionotropic receptor expression for cool temperature sensing and avoidance in </b><b><i>Drosophila</i></b>" slated for publication in Communications Biology.
DOI: 10.17632/626658cf48
title: Data for: LIFFE: Lithospheric Flexure with Finite Elements

description: The Code described in the manuscript
DOI: 10.17632/d7nkgfhc8z
title: flow cytometry dataset of melanoma PBMC

description: This folder contains all supplementary data used to reproduce figures in the manuscript: Peng, X., Lee, J., Adamow, M., Maher, C., Postow, M. A., Callahan, M. K., Panageas, K. S., & Shen, R. (2023). A topic modeling approach reveals the dynamic T cell composition of peripheral blood during cancer immunotherapy. Cell Reports Methods, 3(8), 100546. https://doi.org/10.1016/j.crmeth.2023.100546
DOI: 10.17632/nk9fpwsp2r
title: Pilot metabolomics study

description: Pilot study in untargeted metabolomics fingerprinting for data integration workflow construction
DOI: 10.17632/yp4d95pk7n
title: Code for time-series forecasting by using a recurrent neural network model

description: General description: - This dataset comprises a Jupyter notebook that includes a Python code for sequence-to-sequence time-series forecasting by training and evaluating recurrent neural network models. - The code was developed to enable rapid and wide-scale development, production and evaluation of time-series models and predictions. - The RNN's architecture has a convolutional layer for handling inputs, within a composite autoencoder’s neural network. Instructions for usage: - The Python code is located in a Jupyter notebook that can be opened online or locally, by using a Jupyter Notebook compatible platform as: https://jupyter.org (accessed 11 July 2020). https://colab.research.google.com (accessed 11 July 2020). - In order to use the code, a data source should exist in a "csv" file extension and it should be named as 'data_input.csv' or alternatively, an online link to the data source could be entered when executing the code. The data source should have first 4 columns for metadata. The unique name or identifier for each row will be located in the 2nd column, otherwise, a change has to be made in the code in the gen_data function (line 282) and line 286 in case of the need to change metadata columns size, into less or more. The rest of the columns indicate the accumulated number or value in each column. Important parameters: - target_pred: specifies which row in the data to predict. - crop_point: specifies which data point to crop the time-series data at, ex. training data = before crop_point, evaluation data = after crop_point. - time_steps: specifies which time-steps to use, ex. 15 or 20, meaning: 15 for X and 15 for Y in the sequence-to-sequence model. - RNN parameters: ex. batch size, epochs, layer sizes, RNN architecture (GRU or LSTM). - ext: specifies the end date of predictions.
DOI: 10.6084/m9.figshare.12581309.v1
title: Supplementary Material for: Implementation of PD-L1 22C3 IHC pharmDx<sup>TM</sup> in Cell Block Preparations of Lung Cancer: Concordance with Surgical Resections and Technical Validation of CytoLyt® Prefixation

description: <b><i>Background:</i></b> Programmed death ligand-1 (PD-L1) assessed by immunohistochemistry (IHC) is used as biomarker for pembrolizumab therapy in advanced stage lung cancer patients. However, data permitting direct performance comparison between cytology and surgical specimen types are limited since both specimens from a single tumor site are infrequently available. In addition, alcohol fixation used with cytology specimens requires technical validation of the PD-L1 IHC assay before clinical use. We here report our experience with implementation of the PD-L1 22C3 IHC pharmDx<sup>TM</sup> assay for cytologic samples at a large tertiary cancer center. <b><i>Study Design:</i></b> Archival formalin-fixed (FF), paraffin-embedded cell blocks (CBs) and subsequent lung tumor resections (LTRs) from the same anatomical site were used for a direct comparison of PD-L1 tumor proportion scores (TPSs). TPS values were independently determined by one surgical lung pathologist and two cytopathologists blinded to the specimen pairs. An interim analysis was performed to facilitate the pooling of expertise among observers. After PD-L1 22C3 IHC pharmDx<sup>TM</sup> implementation for FF cytology specimens, dual-processed samples were used for a prospective technical validation of CytoLyt® prefixation (CF). Digital image analysis was performed for a subset of dual-processed specimens. <b><i>Results:</i></b> Eighty-one CBs and LTRs were included for comparison of the specimen types. PD-L1 assessment in CBs had an accuracy, sensitivity, specificity, positive predictive value, and negative predictive value of 88.9/72.8, 66.7/73.5, 95.2/72.3, 80.0/65.8, and 90.9/79.1% for the ≥50/≥1% cutoff, respectively. The intraclass correlation coefficient was 0.84 (95% confidence interval [CI]: 0.76, 0.90), and it improved after interim analysis (before: 0.79 and after: 0.92). The overall concordance between CF and FF for the categories defined by the ≥50/≥1% cutoff values was 90.4% (95% CI: 79.0, 96.8). Similar assay performance was confirmed by digital analysis. <b><i>Conclusions:</i></b> PD-L1 22C3 IHC pharmDx<sup>TM</sup> shows good reliability if used with CB preparations. CF does not impact assay results significantly. Clinical validation with outcome data is needed, and digital methods of assessment should be further investigated.
DOI: 10.6084/m9.figshare.13114637.v2
title: A comparative analysis on a non-linear microbial and a linear model in simulating soil heterotrophic respiration in grassland

description: JGR-Biogeosciences
DOI: 10.6084/m9.figshare.28239455.v1
title: Development of SOA modules in the WRF-Chem model and evaluation of the key formation pathways of SOA and associated health risk over mainland China

description: The date for the study of Development of SOA modules in the WRF-Chem model and evaluation of the key formation pathways of SOA and associated health risk over mainland China.
DOI: 10.17632/txm56225cd
title: AFES-Venus data set

description: The data products derived and presented in the manuscript of "Venusian cloud distribution simulated by a general circulation model" to Journal of Geophysical Research - Planets. *.grd file is grads format file and *.ctl file is control file of grads data. The detail of the data is given by Sugimoto et al. (2014a and 2014b) and Takagi et al. (2018).
DOI: 10.17632/x2c6c8thdk
title: BAU-Insectv2 Agricultural Plant Insect Dataset

description: The BAU-Insectv2 Plant Insect Dataset is a collection of images representing various insect species that affect plants and crops.
DOI: 10.6084/m9.figshare.24879048.v1
title: Gathering Data on Monumenta collections in Europe.docx

description: This Appendix, complemented with a spreadsheet, presents an overview of <i>Monumenta</i> collections in Europe that have published at least one volume since the beginning of the twenty-first century, and that focus on editing music from a particular country, region, time period, or type of music. The aim of compiling such a list is to provide a snapshot of the landscape of <i>Monumenta</i> collections in Europe in the twenty-first century, contributing thus to the broader discussion of these collections that is been undertaken in the framework of the COST Action ‘A new ecosystem of early music studies (EarlyMuse)’.
DOI: 10.6084/m9.figshare.29039744.v1
title: Chronic kidney Disease overall survival prediction model based on frailty index score: construction and validation using NHANES data

description: Frailty predicts poor outcomes in chronic kidney disease (CKD) patients. This study compared frailty’s predictive power with other factors and aimed to develop a model for predicting overall survival (OS) in CKD patients. The study included 3,714 CKD participants from the National Health and Nutrition Examination Survey 2005–2018. The death data were updated to December 31, 2019. Lasso-Cox regression identified significant predictors among 42 factors, resulting in a prognostic nomogram using 11 key variables. Subsequent evaluation of the nomogram involved the C-index, the Areas Under Time-dependent Receiver Operating Characteristic Curves (AUC) and calibration curves. Over a median follow-up of 5.92 years, 1,234 deaths occurred. The final predictors of OS in CKD patients included age, ethnicity, smoking status, estimated pulse wave velocity, body fat percentage, blood uric acid concentration, blood urea nitrogen concentration, and albumin concentration, neutrophil-to-lymphocyte ratio, urine albumin-to-creatinine ratio level, and frailty index (FI) score. The FI score was the strongest predictor with an HR of 76.54 (95% CI: 42.93, 136.46, <i>p</i> &lt; 0.0001). In the training set, the AUC values were 80.11% for 1-year, 79.90% for 3-year, 79.53% for 5-year, and 81.34% for 10-year follow-ups. In the internal validation set, AUC values were 78.66%, 77.78%, 77.56%, and 79.54%, respectively. The nomogram’s corrected C-index was 0.76 (95% CI: 0.75 − 0.78), and calibration curves showed satisfactory accuracy. The FI score is a significant predictor of CKD OS. The developed nomogram based on the FI score is a promising tool for predicting the OS of CKD patients.