cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1198919
title: A Rescaled Subset Of The Alternative Data Release 1 Of The Tifr Gmrt Sky Survey

description: The catalogue in FITS format from this paper: http://adsabs.harvard.edu/abs/2017arXiv170306635H

This Rescaled Subset of the Alternative Data Release 1 to the Tata Institute of Fundamental Physics Giant Metrewave Radio Telescope Sky Survey (TGSS-RSADR1) modifies the initial data release of TGSS-ADR1 (Intema et al. 2017) to bring that catalogue to the same flux scale as the extragalactic catalogue from the GaLactic and Extragalactic All-sky Murchison Widefield Array survey (GLEAM: Wayth et al. 2015; Hurley-Walker et al. 2017). In this paper we motivate the derivation of correct and complementary flux density scales, introduce a methodology for correction based on radial basis functions, apply it to TGSS-ADR1, and create a modified catalogue, TGSS-RSADR1. This catalogue comprises 383,589 TGSS-ADR1 sources with updated flux density and flux density uncertainty values, and covers $\mathrm{Declination}\leq+30^\circ$, $|b|\geq10^\circ$, a sky area of 18,800 deg$^2$.
DOI: 10.5281/zenodo.1198920
title: A Rescaled Subset Of The Alternative Data Release 1 Of The Tifr Gmrt Sky Survey

description: The catalogue in FITS format from this paper: http://adsabs.harvard.edu/abs/2017arXiv170306635H

This Rescaled Subset of the Alternative Data Release 1 to the Tata Institute of Fundamental Physics Giant Metrewave Radio Telescope Sky Survey (TGSS-RSADR1) modifies the initial data release of TGSS-ADR1 (Intema et al. 2017) to bring that catalogue to the same flux scale as the extragalactic catalogue from the GaLactic and Extragalactic All-sky Murchison Widefield Array survey (GLEAM: Wayth et al. 2015; Hurley-Walker et al. 2017). In this paper we motivate the derivation of correct and complementary flux density scales, introduce a methodology for correction based on radial basis functions, apply it to TGSS-ADR1, and create a modified catalogue, TGSS-RSADR1. This catalogue comprises 383,589 TGSS-ADR1 sources with updated flux density and flux density uncertainty values, and covers $\mathrm{Declination}\leq+30^\circ$, $|b|\geq10^\circ$, a sky area of 18,800 deg$^2$.
DOI: 10.5281/zenodo.1198730
title: Genome-Wide Association Studies Identify Candidate Genes For Coat Color And Mohair Traits In The Iranian Markhoz Goat

description: Illumina Caprine 53K SNPchip genotypes of 228 Iranian goats used for coat color and mohair traits GWAS
DOI: 10.5281/zenodo.1198748
title: Data To "Drusen And Choroid:  A Swept-Source Optical Coherence Tomography  And Swept-Source Optical Coherence Tomography Angiography Analysis."

description: This record contains experimental and analysis scripts (written in Matlab) as well as raw and processed data to reproduce the results shown in:

Rosa R., Corazza P., Musolino M., Mochi C., Bruzzi P., Maiello G., Traverso C. E., & Nicolò M. (in preparation) Drusen and Choroid: A Swept-Source Optical Coherence Tomography and Swept-Source Optical Coherence Tomography Angiography Analysis.
DOI: 10.6073/pasta/9f2f89e48f9e943f7125d1a335d96eb0
title: Biodiversity - Fauna - Soil Fauna - Relative frequency of soil arthropod groups at Cub Hill

description: Relative frequency of soil arthropod groups at Cub Hill
      
      
          Introduction
      
      
      
          The Baltimore Ecosystem Study (BES) has established a network of long-term permanent forest plots. These plots will provide long-term data on vegetation, soil and hydrologic processes in the key ecosystem types within the urban ecosystem. The current network of study plots includes eight forest plots, chosen to represent the range of forest conditions in the area. The goal of the soil invertebrate survey was to compare community composition and abundance of soil macrofauna, primarily earthworms (Oligochatea), terrestrial isopods (Isopoda: Oniscidea), and millipedes (Diplopoda).  
      
      
          Plot Locations and Characterizations
      
      
          In November of 1998 four rural, forested plots were established at Oregon Ridge Park in Baltimore County northeast of the Gwynns Falls Watershed. Oregon Ridge Park contains Pond Branch, the forested reference watershed for BES. Two of these four plots are located on the top of a slope; the other two are located midway up the slope.
      
      
          Four urban, forested plots were established in November 1998, two at Leakin Park and two adjacent to Hillsdale Park in west Baltimore City in the Gwynns Falls. One of the plots in Hillsdale Park was abandoned in 2004 due to continued vandalism.
      
      
          Plot locations:
      
      
          Hillsdale 1: 39deg19'28.14degN, 76deg42'16.49"W
      
          Hillsdale 2: 39deg19'31.24degN, 76deg42'28.62"W
      
      
          Leakin 1: 39deg18'1.32"N, 76deg41'37.08"W
      
          Leakin 2: 39deg18'5.42"N, 76deg41'34.15"W
      
      
          Oregon top-slope - 1: 39deg28'51.11"N, 76deg41'22.50"W
      
          Oregon mid-slope - 1: 39deg28'51.32"N, 76deg41'18.24"W
      
          Oregon top-slope - 2: 39deg29'12.74"N, 76deg41'22.88"W
      
          Oregon mid-slope - 2: 39deg29'12.68"N, 76deg41'18.62"W
      
      
          Soil arthropods were sampled between November 1999 and 2000 using pitfall traps. At each plot a total of ten traps were placed which were emptied monthly. Earthworms were sampled using a combination of formalin solution (Raw 1954) and mustard suspension. 50cm x 50cm quadrats were used. Earthworms samples were taken is spring, summer and fall 1999, 2000, and 2002. In addition several qualitative samples were taken from residential and commercial areas in the city. 
      
      
          Data were collected during in July 2002. Soil animals were searched for half an hour at each land cover types. A total of 14 residences were selected for this survey- and adata wer always collected between 11 am and 2 pm. Data were collected by undergraduates Janelle Harris and Jennifer Stiltz, as part of an NSF supported UMBEB project (BCEB: Baltimore Collaborative for Environmental Biology).
DOI: 10.5281/zenodo.1198779
title: Ws-Crr

description: DIHARD track1 ws-cr system (with R)
DOI: 10.5281/zenodo.1198782
title: Ws-Cr

description: DIHARD track1 ws-cr system (no R)
DOI: 10.21336/gen.2
title: Trends in atmospheric sulfur components from the major regional monitoring network including results from six global atmospheric transport models, 1990-2015 (data from 1980)

description: Rimeseries of monthly air concentrations and total wet depostion are presentet in the data file. The headings should be self-explaining with information of stations, coordinates, networks, field methods, sampling frequencies, observational data and model results.
description: The statistical results are presented in individual files for component, time periods (1980-1990,1990,2000,2000-2010,1990-2015,2000-2015) and season.
description: The non-parametric Mann-Kendall test was used to detect and estimate trends. Theil-Sen's slope estimator was used to quantify the magnitude of potential trends. 75% data completness were required for calculating trends.
DOI: 10.5281/zenodo.1198804
title: Data To "Drusen And Choroid:  A Swept-Source Optical Coherence Tomography  And Swept-Source Optical Coherence Tomography Angiography Analysis."

description: This record contains experimental and analysis scripts (written in Matlab) as well as raw and processed data to reproduce the results shown in:

Rosa R., Corazza P., Musolino M., Mochi C., Bruzzi P., Maiello G., Traverso C. E., & Nicolò M. (in preparation) Drusen and Choroid: A Swept-Source Optical Coherence Tomography and Swept-Source Optical Coherence Tomography Angiography Analysis.
DOI: 10.5281/zenodo.1195778
title: A Site Atmospheric State Best Estimate Of Temperature For Lauder, New Zealand (1997-2012)

description: A Site Atmospheric State Best Estimate (SASBE) of the temperature profile above the GCOS (Global Climate Observing System) Reference Upper-Air Network (GRUAN) site at Lauder, New Zealand, has been developed. Data from multiple sources are combined within the SASBE to generate a high temporal resolution data set that includes an estimate of the uncertainty on every value. The SASBE has been developed to enhance the value of measurements made at the distributed GRUAN site at Lauder and Invercargill (about 180 km apart), and to demonstrate a methodology which can be adapted to other distributed sites.

Within GRUAN, a distributed site consists of a cluster of instruments at different locations.<br>
The temperature SASBE combines measurements from radiosondes and automatic weather stations at Lauder and Invercargill, and ERA5 reanalysis, which is used to calculate a diurnal temperature cycle to which the SASBE converges in the absence of any measurements.<br>
The SASBE provides hourly temperature profiles at 16 pressure levels between the surface and 10 hPa for the years 1997 to 2012. Every temperature value has an associated uncertainty which is calculated by propagating the measurement uncertainties, the ERA5 ensemble SDs, and the ERA5 representativeness uncertainty through the retrieval chain.

This best-estimate temperature data product for Lauder is expected to be valuable for satellite and model validation as measurements of atmospheric essential climate variables are sparse in the Southern Hemisphere.

A publication describing the data product is submitted to Earth System Science Data Discussions. The title of the publication is: Combining Data from the Distributed GRUAN Site<br>
Lauder-Invercargill, New Zealand, to Provide a Site Atmospheric State Best Estimate of Temperature.
description: Please contact the PI (jordis@bodekerscientific.com) to inform her about your use of the data product
DOI: 10.5281/zenodo.1195779
title: A Site Atmospheric State Best Estimate Of Temperature For Lauder, New Zealand (1997-2012)

description: A Site Atmospheric State Best Estimate (SASBE) of the temperature profile above the GCOS (Global Climate Observing System) Reference Upper-Air Network (GRUAN) site at Lauder, New Zealand, has been developed. Data from multiple sources are combined within the SASBE to generate a high temporal resolution data set that includes an estimate of the uncertainty on every value. The SASBE has been developed to enhance the value of measurements made at the distributed GRUAN site at Lauder and Invercargill (about 180 km apart), and to demonstrate a methodology which can be adapted to other distributed sites.

Within GRUAN, a distributed site consists of a cluster of instruments at different locations.<br>
The temperature SASBE combines measurements from radiosondes and automatic weather stations at Lauder and Invercargill, and ERA5 reanalysis, which is used to calculate a diurnal temperature cycle to which the SASBE converges in the absence of any measurements.<br>
The SASBE provides hourly temperature profiles at 16 pressure levels between the surface and 10 hPa for the years 1997 to 2012. Every temperature value has an associated uncertainty which is calculated by propagating the measurement uncertainties, the ERA5 ensemble SDs, and the ERA5 representativeness uncertainty through the retrieval chain.

This best-estimate temperature data product for Lauder is expected to be valuable for satellite and model validation as measurements of atmospheric essential climate variables are sparse in the Southern Hemisphere.

A publication describing the data product is submitted to Earth System Science Data Discussions. The title of the publication is: Combining Data from the Distributed GRUAN Site<br>
Lauder-Invercargill, New Zealand, to Provide a Site Atmospheric State Best Estimate of Temperature.
description: Please contact the PI (jordis@bodekerscientific.com) to inform her about your use of the data product
DOI: 10.5281/zenodo.1198987
title: System_1

description: SYSTEM_1
DOI: 10.15123/data.00000216
title: Conflict, Memory, Displacement

description: Conflict, Memory, Displacement explores our understanding of global conflict as it relates to the European refugee crisis, focusing on the UK and Italy. We examined how this understanding is constructed through media representations, official and popular discourses, and institutional and citizen-led initiatives. We explored how this understanding in turn shapes institutional and popular responses to population movement. The project also explores how asylum seekers can offer a collective analysis of the institutional processes of ‘becoming migrant’, at the hands of the state and members of society.

This collection of materials, including slides, images, and video, form an 'online exhibition', which arose from the research project, 'Performing memory & memorialising conflict at a distance: innovative approaches to understanding the views of displaced people & receiving communities', a project funded by The Partnership for Conflict, Crime and Security Research (PaCCS), through the Arts and Humanities Research Council (AHRC).

The material in the exhibition (UK) arises from: analysis of UK media; a survey of 130 people; 25 individual interviews; and arts workshops in Birmingham and Nottingham.


Research team: 
Kirsten Forkert (School of Media, Birmingham City University); Gargi Bhattacharyya (Centre for Migration, Refugees and Belonging, University of East London); Federico Oliveri (Sciences for Peace Interdisciplinary Centre, University of Pisa); Janna Graham (Goldsmiths, University of London)
  
Partners: 
Birmingham Asylum and Refugee Association (Birmingham, UK); The Women’s Cultural Exchange (Nottingham, UK); Implicated Theatre (London, UK); and Cantieri Meticci (Bologna, Italy)
DOI: 10.5281/zenodo.1198990
title: Quantifying Biostabilisation Effects Of Biofilm-Secreted And Extracted Extracellular Polymeric Substances (Eps) On Sandy Substrate

description: This dataset provides the data underlying the manuscript <em>Quantifying biostabilisation effects of biofilm-secreted and extracted extracellular polymeric substances (EPS) on sandy substrate </em>published in Earth Surface Dynamics - an interactive open-access journal of the European Geosciences Union.

The work was conducted in the Total Environment Simulator at the University of Hull as part of Task 9.3 of the Hydralab+ inititiative. 

Microbial assemblages ('biofilms') preferentially develop at water-sediment interfaces and are known to have a considerable influence on sediment stability and erodibility. There is potential for significant impacts on sediment transport and morphodynamics and, hence, on the longer-term evolution of coastal and fluvial environments. However, the biostabilisation effects remain poorly understood and quantified due to the inherent complexity of biofilms and the large spatial and temporal (i.e. seasonality) variations involved. Here, we use controlled laboratory tests to systematically quantify the effects of natural biofilm colonisation as well as extracted extracellular polymeric substances (EPS) on sediment stability. Extracted EPS may be useful to simulate biofilm-mediated biostabilisation, and potentially provides a method of speeding up time scales of physical modelling experiments investigating biostabilisation effects. We find a mean biostabilisation effect due to natural biofilm colonisation and development of almost four times that of the uncolonised sand. The presented cumulative probability distribution of measured critical threshold for erosion of colonised sand reflects the large spatial and temporal variations generally seen in natural biostabilised environments. For identical sand, engineered sediment stability from the addition of extracted EPS compares well across the measured range of the critical threshold for erosion and behaves in a linear and predictable fashion. Yet, the effectiveness of extracted EPS to stabilise sediment is sensitive to the preparation procedure, time after application and environmental conditions such as salinity, pH and temperature. These findings are expected to improve bio-physical experimental models in fluvial and coastal environments and provide much-needed quantification of biostabilisation to improve predictions of sediment dynamics in aquatic ecosystems.
DOI: 10.5281/zenodo.1198991
title: Quantifying Biostabilisation Effects Of Biofilm-Secreted And Extracted Extracellular Polymeric Substances (Eps) On Sandy Substrate

description: This dataset provides the data underlying the manuscript <em>Quantifying biostabilisation effects of biofilm-secreted and extracted extracellular polymeric substances (EPS) on sandy substrate </em>published in Earth Surface Dynamics - an interactive open-access journal of the European Geosciences Union.

The work was conducted in the Total Environment Simulator at the University of Hull as part of Task 9.3 of the Hydralab+ inititiative. 

Microbial assemblages ('biofilms') preferentially develop at water-sediment interfaces and are known to have a considerable influence on sediment stability and erodibility. There is potential for significant impacts on sediment transport and morphodynamics and, hence, on the longer-term evolution of coastal and fluvial environments. However, the biostabilisation effects remain poorly understood and quantified due to the inherent complexity of biofilms and the large spatial and temporal (i.e. seasonality) variations involved. Here, we use controlled laboratory tests to systematically quantify the effects of natural biofilm colonisation as well as extracted extracellular polymeric substances (EPS) on sediment stability. Extracted EPS may be useful to simulate biofilm-mediated biostabilisation, and potentially provides a method of speeding up time scales of physical modelling experiments investigating biostabilisation effects. We find a mean biostabilisation effect due to natural biofilm colonisation and development of almost four times that of the uncolonised sand. The presented cumulative probability distribution of measured critical threshold for erosion of colonised sand reflects the large spatial and temporal variations generally seen in natural biostabilised environments. For identical sand, engineered sediment stability from the addition of extracted EPS compares well across the measured range of the critical threshold for erosion and behaves in a linear and predictable fashion. Yet, the effectiveness of extracted EPS to stabilise sediment is sensitive to the preparation procedure, time after application and environmental conditions such as salinity, pH and temperature. These findings are expected to improve bio-physical experimental models in fluvial and coastal environments and provide much-needed quantification of biostabilisation to improve predictions of sediment dynamics in aquatic ecosystems.
DOI: 10.5281/zenodo.1183324
title: Local Order And Crystallization Of Dense Polydisperse Hard Spheres

description: This dataset is associated with "Local order and crystallization of dense polydisperse hard spheres", Daniele Coslovich, Misaki Ozawa, and Ludovic Berthier, J. Phys.: Condens. Matter 30, 144004 (2018) [doi:10.1088/1361-648X/aab0c9 arXiv:1801.09638].                                                               <br>
                                                                                                                                               <br>
It include scripts and data files to allow for the replication of the figures. EPS figures were generated using gnuplot version 5.0.
DOI: 10.5281/zenodo.1183325
title: Local Order And Crystallization Of Dense Polydisperse Hard Spheres

description: This dataset is associated with "Local order and crystallization of dense polydisperse hard spheres", Daniele Coslovich, Misaki Ozawa, and Ludovic Berthier, J. Phys.: Condens. Matter 30, 144004 (2018) [doi:10.1088/1361-648X/aab0c9 arXiv:1801.09638].                                                               <br>
                                                                                                                                               <br>
It include scripts and data files to allow for the replication of the figures. EPS figures were generated using gnuplot version 5.0.
DOI: 10.5281/zenodo.1198836
title: Ws-Crr

description: DIHARD track1 ws-cr system (with R)
DOI: 10.5281/zenodo.1198837
title: Ws-Cr

description: DIHARD track1 ws-cr system (no R)
DOI: 10.7939/r3zs2kt6x
title: CEOs 2014
DOI: 10.6078/m7ks6pnn
title: Historic Fort Snelling
DOI: 10.6078/m7qf8qzn
title: Bade Museum
DOI: 10.5281/zenodo.1198851
title: Ws-Cr-Baseline

description: DIHARD track1 ws-cr system (with R), baseline
DOI: 10.5281/zenodo.1187149
title: Yeast Proteomics Microflow 23 Min Gradient Dia-Ms

description: <em>Saccharomyces cerevisiae</em> (BY4743 rendered prototrophic with a plasmid encoding for HIS3, LEU2 and URA3 [25]) were grown to exponential phase in minimal synthetic nutrient media. Proteins were extracted by bead beating for 5min at 1500rpm in 8M urea/0.1M ammonium bicarbonate. Proteins were reduced with 5mM dithiothreitol, alkylated with 10mM iodoacetamide. The sample was diluted to 1.5M urea/0.1M ammonium bicarbonate before the proteins were digested overnight with Trypsin (1:30 Trypsin to total protein ratio). Peptides were cleaned-up with 96-well MacroSpin plates (Nest Group) and iRT peptides (Biognosys AG) were spiked in.

The digested peptides were analysed on a nanoAcquity (Waters) coupled to a TripleTOF 6600 (Sciex). Peptides were separated with a 23 minute non-linear gradient (4% Acetonitrile/0.1 % formic acid to 36% Acetonitrile/0.1% formic acid) on a Waters HSS T3 column (150mm x 300μm, 1.8μm Particles) with a 5μl/min flow rate. The DIA method consisted of an MS1 scan from m/z 400 to m/z 1250 (50ms accumulation time) and 40 MS2 scans (35ms accumulation time) with variable precursor isolation width covering the mass range from m/z 400 to m/z 1250.
description: This work was supported by the Francis Crick Institute which receives its core funding from Cancer Research UK (FC001134), the UK Medical Research Council (FC001134), and the Wellcome Trust (FC001134), and received specific funding from the BBSRC (BB/N015215/1 and BB/N015282/1).
DOI: 10.5281/zenodo.1187150
title: Yeast Proteomics Microflow 23 Min Gradient Dia-Ms

description: <em>Saccharomyces cerevisiae</em> (BY4743 rendered prototrophic with a plasmid encoding for HIS3, LEU2 and URA3 [25]) were grown to exponential phase in minimal synthetic nutrient media. Proteins were extracted by bead beating for 5min at 1500rpm in 8M urea/0.1M ammonium bicarbonate. Proteins were reduced with 5mM dithiothreitol, alkylated with 10mM iodoacetamide. The sample was diluted to 1.5M urea/0.1M ammonium bicarbonate before the proteins were digested overnight with Trypsin (1:30 Trypsin to total protein ratio). Peptides were cleaned-up with 96-well MacroSpin plates (Nest Group) and iRT peptides (Biognosys AG) were spiked in.

The digested peptides were analysed on a nanoAcquity (Waters) coupled to a TripleTOF 6600 (Sciex). Peptides were separated with a 23 minute non-linear gradient (4% Acetonitrile/0.1 % formic acid to 36% Acetonitrile/0.1% formic acid) on a Waters HSS T3 column (150mm x 300μm, 1.8μm Particles) with a 5μl/min flow rate. The DIA method consisted of an MS1 scan from m/z 400 to m/z 1250 (50ms accumulation time) and 40 MS2 scans (35ms accumulation time) with variable precursor isolation width covering the mass range from m/z 400 to m/z 1250.
description: This work was supported by the Francis Crick Institute which receives its core funding from Cancer Research UK (FC001134), the UK Medical Research Council (FC001134), and the Wellcome Trust (FC001134), and received specific funding from the BBSRC (BB/N015215/1 and BB/N015282/1).
DOI: 10.17632/k5p7bwnpxz.2
title: Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis

description: These are Additional Files for the manuscript "Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis" published in GENE.