cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20050805.50.1
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2005-08-05. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20050805.50.2
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2005-08-05. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20051117.40.1
title: (:unkn)
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20051117.40.2
title: (:unkn)
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20051117.50.1
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2005-11-17. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20060228.40.1
title: (:unkn)
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20060228.50.3
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2006-02-28. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20060526.40.2
title: (:unkn)
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20060526.50.5
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2006-05-26. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20060811.40.1
title: (:unkn)
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20060811.40.2
title: (:unkn)
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20060811.50.2
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2006-08-11. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.
DOI: 10.6085/aa/rkpx00_xxxitbdxlsr02_20060811.50.3
title: PISCO: Intertidal: site temperature data: Rocky Point, Oregon, USA (RKPX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Rocky Point, Oregon, USA, by PISCO. Measurements were collected using StowAway TidbiT Temperature Loggers (Onset Computer Corp. TBI32-05+37) beginning 2006-08-11. Site temperature loggers are bolted down in a wire cage at three locations within each site near MLLW. Temperature is recorded at 1 hour intervals.
DOI: 10.6084/m9.figshare.11912139
title: Dataset supporting the article from Consequences of undetected olfactory loss for human chemosensory communication and well-being

description: Olfactory perception has implications for human chemosensory communication and in a broader context, it affects well-being. However, most of the studies investigating the consequences of olfactory loss have recruited patients who have already been categorized as having a dysfunctional sense of smell and sought help in an ENT clinic. We revisit these findings by distinguishing subjects with olfactory impairment from a group of subjects who all declared a normal sense of smell when enrolling for this study. In the initial sample of 203 individuals, we found 59 to have impaired olfaction and four with marginal olfactory performance, not useful in daily life. Interestingly, we found a significant between-group difference in cognitive functioning, further supporting the notion of the relationship between cognition and olfactory performance. However, their chemosensory communication and well-being appeared not to be different from subjects with normosmia. Impaired olfactory function certainly has a severe impact on daily life but more so in individuals who are bothered with it and decide to seek treatment. The limited-to-no olfactory perception in the fraction of subjects who neither complain about it nor seek help in ENT clinics does not seem to experience a major effect on their social, cognitive, emotional and health functioning.This article is part of the Theo Murphy meeting issue ‘Chemical communication in humans'.
DOI: 10.6084/m9.figshare.11912133
title: Description of datasets from A review and meta-analysis of collaborative research prioritization studies in ecology, biodiversity conservation and environmental science

description: Description of the datasets used in the meta-analysis performed in this study
DOI: 10.6084/m9.figshare.11912139.v1
title: Dataset supporting the article from Consequences of undetected olfactory loss for human chemosensory communication and well-being

description: Olfactory perception has implications for human chemosensory communication and in a broader context, it affects well-being. However, most of the studies investigating the consequences of olfactory loss have recruited patients who have already been categorized as having a dysfunctional sense of smell and sought help in an ENT clinic. We revisit these findings by distinguishing subjects with olfactory impairment from a group of subjects who all declared a normal sense of smell when enrolling for this study. In the initial sample of 203 individuals, we found 59 to have impaired olfaction and four with marginal olfactory performance, not useful in daily life. Interestingly, we found a significant between-group difference in cognitive functioning, further supporting the notion of the relationship between cognition and olfactory performance. However, their chemosensory communication and well-being appeared not to be different from subjects with normosmia. Impaired olfactory function certainly has a severe impact on daily life but more so in individuals who are bothered with it and decide to seek treatment. The limited-to-no olfactory perception in the fraction of subjects who neither complain about it nor seek help in ENT clinics does not seem to experience a major effect on their social, cognitive, emotional and health functioning.This article is part of the Theo Murphy meeting issue ‘Chemical communication in humans'.
DOI: 10.6084/m9.figshare.11912130
title: Article metadata from A review and meta-analysis of collaborative research prioritization studies in ecology, biodiversity conservation and environmental science

description: Metadata from the 41 CRP studies included in this review
DOI: 10.6084/m9.figshare.11912124
title: Analysis code from A review and meta-analysis of collaborative research prioritization studies in ecology, biodiversity conservation and environmental science

description: R code used to conduct the analysis and create the figures in this study
DOI: 10.6084/m9.figshare.11912127
title: Research priorities from A review and meta-analysis of collaborative research prioritization studies in ecology, biodiversity conservation and environmental science

description: Database of 2031 research priorities identified in the 41 CRP studies included in this review
DOI: 10.6084/m9.figshare.11912130.v1
title: Article metadata from A review and meta-analysis of collaborative research prioritization studies in ecology, biodiversity conservation and environmental science

description: Metadata from the 41 CRP studies included in this review
DOI: 10.6084/m9.figshare.11912133.v1
title: Description of datasets from A review and meta-analysis of collaborative research prioritization studies in ecology, biodiversity conservation and environmental science

description: Description of the datasets used in the meta-analysis performed in this study
DOI: 10.6084/m9.figshare.11912127.v1
title: Research priorities from A review and meta-analysis of collaborative research prioritization studies in ecology, biodiversity conservation and environmental science

description: Database of 2031 research priorities identified in the 41 CRP studies included in this review
DOI: 10.6084/m9.figshare.11912082
title: Untitled Item

description: These tables include the data of the PCR primers and the obtained sequences of the gaps within the scaffold of Desulfuromonas sp. strain AOP6.
DOI: 10.6084/m9.figshare.11912082.v1
title: Untitled Item

description: These tables include the data of the PCR primers and the obtained sequences of the gaps within the scaffold of Desulfuromonas sp. strain AOP6.
DOI: 10.6084/m9.figshare.11912058
title: Supplementary_text_final.pdf

description: This text describes the PCR/Sanger-sequencing based gap closing of the genome sequence of Desulfuromonas sp. strain AOP6.
DOI: 10.6084/m9.figshare.11912058.v1
title: Supplementary_text_final.pdf

description: This text describes the PCR/Sanger-sequencing based gap closing of the genome sequence of Desulfuromonas sp. strain AOP6.
DOI: 10.6084/m9.figshare.11912034
title: Additional file 1 of Unusual sequence characteristics of human chromosome 19 are conserved across 11 nonhuman primates

description: Additional file 1: Table S1. Human chr19 orthologs. Table S2. Primate genome GC and CpG Content. Table S3. Spearman’s correlation coefficients of chromosome length to GC Content. Table S4. GC content for outgroups at varying liftOver settings. Table S5. GC content and CpG density for chromosome 19 orthologs partitioned into gene cluster and non-gene cluster regions. Table S6. Human Regulatory region CpG Density. Table S7. Human Regulatory region CpG Density partitioned into gene cluster and non-gene cluster regions. Table S8. SNPs in humans, three Old World monkeys and a New World monkey. Table S9. SNPs for chromosome 19 orthologs partitioned into gene cluster and non-gene cluster regions. Table S10. Human Expression Variance Based on GTEx. Table S11. Human Expression Transcripts Per Million (TPM) Based on GTEx. Table S12. Human Expression Index of Dispersion Based on GTEx. Table S13. PhyloP conservation relative to the human genome. Table S14. PhyloP conservation relative to the human genome for regulatory regions. Table S15. PhyloP conservation relative to the human genome for regulatory regions in chromosome 19 cluster and non-cluster regions. Table S16. GREAT results within gene clusters for the phyloP100way dataset for Enhancers, Promoter Flanking, and Promoters showing accelerated nucleotide evolution. Table S17. GREAT results outside of gene clusters for the phyloP100way dataset for Enhancers, Promoter Flanking, and Promoters showing accelerated nucleotide evolution. Table S18. Percent of substitutions in CpGs based on pairwise comparisons to human. Table S19. Mammalian Expression Variance. Table S20. Primate sperm methylome data 1 for promoter, promoter flanking, enhancer and general genomic regions. Table S21. Hypomethylated region average size genomewide and for chromosome 19.
DOI: 10.6084/m9.figshare.11912034.v1
title: Additional file 1 of Unusual sequence characteristics of human chromosome 19 are conserved across 11 nonhuman primates

description: Additional file 1: Table S1. Human chr19 orthologs. Table S2. Primate genome GC and CpG Content. Table S3. Spearman’s correlation coefficients of chromosome length to GC Content. Table S4. GC content for outgroups at varying liftOver settings. Table S5. GC content and CpG density for chromosome 19 orthologs partitioned into gene cluster and non-gene cluster regions. Table S6. Human Regulatory region CpG Density. Table S7. Human Regulatory region CpG Density partitioned into gene cluster and non-gene cluster regions. Table S8. SNPs in humans, three Old World monkeys and a New World monkey. Table S9. SNPs for chromosome 19 orthologs partitioned into gene cluster and non-gene cluster regions. Table S10. Human Expression Variance Based on GTEx. Table S11. Human Expression Transcripts Per Million (TPM) Based on GTEx. Table S12. Human Expression Index of Dispersion Based on GTEx. Table S13. PhyloP conservation relative to the human genome. Table S14. PhyloP conservation relative to the human genome for regulatory regions. Table S15. PhyloP conservation relative to the human genome for regulatory regions in chromosome 19 cluster and non-cluster regions. Table S16. GREAT results within gene clusters for the phyloP100way dataset for Enhancers, Promoter Flanking, and Promoters showing accelerated nucleotide evolution. Table S17. GREAT results outside of gene clusters for the phyloP100way dataset for Enhancers, Promoter Flanking, and Promoters showing accelerated nucleotide evolution. Table S18. Percent of substitutions in CpGs based on pairwise comparisons to human. Table S19. Mammalian Expression Variance. Table S20. Primate sperm methylome data 1 for promoter, promoter flanking, enhancer and general genomic regions. Table S21. Hypomethylated region average size genomewide and for chromosome 19.
DOI: 10.6084/m9.figshare.11912019
title: Additional file 1 of Perceptions of resuscitation care among in-hospital cardiac arrest responders: a qualitative analysis

description: Additional file 1. Spreadsheet with sample quotations for compiled themes.
DOI: 10.6084/m9.figshare.11912019.v1
title: Additional file 1 of Perceptions of resuscitation care among in-hospital cardiac arrest responders: a qualitative analysis

description: Additional file 1. Spreadsheet with sample quotations for compiled themes.
DOI: 10.6084/m9.figshare.11911968
title: Additional file 1 of Measuring the quality of care in nursing home residents with early-onset neurodegenerative diseases: a scoping review

description: Additional file 1. Search terms.
DOI: 10.6084/m9.figshare.11911968.v1
title: Additional file 1 of Measuring the quality of care in nursing home residents with early-onset neurodegenerative diseases: a scoping review

description: Additional file 1. Search terms.
DOI: 10.6084/m9.figshare.11911422
title: New insights into the associations among feed efficiency, metabolizable efficiency traits and related QTL regions in broiler chickens

description: PLINK binary files contained genotype and map information of 1,279,346 autosomal variants, and phenotypic values of feed efficiency and metabolizable efficiency traits in 180 male broilers.<br>
DOI: 10.6084/m9.figshare.11911422.v1
title: New insights into the associations among feed efficiency, metabolizable efficiency traits and related QTL regions in broiler chickens

description: PLINK binary files contained genotype and map information of 1,279,346 autosomal variants, and phenotypic values of feed efficiency and metabolizable efficiency traits in 180 male broilers.<br>
DOI: 10.6084/m9.figshare.11911386
title: Trinity_Gardens_Sample_Metadata.csv

description: Metadata of sampling environment<br>
DOI: 10.6084/m9.figshare.11911389
title: Effects of air-sea coupling and ocean mean state on BSISO in SP GCMs: Dataset

description: The effect of air-sea coupling on the simulated boreal summer intraseasonal oscillation (BSISO) is examined using atmosphere—ocean-mixed-layer coupled (SPCAM3-KPP) and uncoupled configurations of the Super-Parameterized (SP) Community Atmospheric Model, version 3 (SPCAM3). The coupled configuration is constrained to either the observed ocean mean state or the mean state from the SP coupled configuration with a dynamic ocean (SPCCSM3), to understand the effect of mean state biases on the BSISO in the latter. All configurations overestimate summer mean subtropical rainfall and its intraseasonal variance. All configurations simulate realistic BSISO northward propagation over the Indian Ocean and western Pacific, in common with other SP configurations.Constraining SPCAM3-KPP to the SPCCSM3 mean state reduces the overestimated BSISO variability, but also weakens BSISO propagation. Using the SPCCSM3 mean state also introduces a one-month delay to the BSISO seasonal cycle compared to SPCAM3-KPP with the observed ocean mean state, which matches well with the reanalysis. The phase relationship between intraseasonal rainfall and sea surface temperature (SST) is captured by all coupled models, but with a shorter delay between suppressed convection and warm SST relative to the reanalysis. Prescribing the 31-day smoothed SSTs from the SPCAM3-KPP simulations in SPCAM3 worsens the overestimated BSISO variance. This suggests that air-sea coupling improves the amplitude of the simulated BSISO. Based on a Taylor diagram, SPCCSM3 mean state SST biases and air-sea coupling both lead to higher simulated BSISO fidelity, largely due to their ability to suppress the overestimated subtropical BSISO variance.
DOI: 10.6084/m9.figshare.11911368
title: otu_table.xlsx

description: Otu Table from trinity gardens project<br>
DOI: 10.6084/m9.figshare.11911377
title: Genome-wide analysis reveals human-mediated introgression from Western pigs to indigenous Chinese breeds

description: Genetic variations introduced via introgression from Western to Chinese pigs have contributed to the performance of Chinese breeds in traits such as growth rate and feed conversion efficiency. However, little is known about the underlying genomic changes that occurred during introgression, the types of traits affected by introgression. To address these questions, 525 animals were characterized using a SNP array to detect genomic regions that had been introgressed from European to indigenous Chinese breeds. The functions of genes located in introgressed regions were also investigated. Our data show that five out of six indigenous Chinese breeds show evidence of introgressions from Western pigs, and eight introgressed genome regions are shared by five of the Chinese breeds. A region located on chr13: 12.8M~13.1M was affected by both introgression and artificial selection, and this region contains the glucose absorption related gene, <i>OXSM</i>, and the sensory related gene, <i>NGLY</i>. The results provide a foundation for understanding introgression from Western to indigenous Chinese pigs.
DOI: 10.6084/m9.figshare.11911386.v1
title: Trinity_Gardens_Sample_Metadata.csv

description: Metadata of sampling environment<br>
DOI: 10.6084/m9.figshare.11911377.v1
title: Genome-wide analysis reveals human-mediated introgression from Western pigs to indigenous Chinese breeds

description: Genetic variations introduced via introgression from Western to Chinese pigs have contributed to the performance of Chinese breeds in traits such as growth rate and feed conversion efficiency. However, little is known about the underlying genomic changes that occurred during introgression, the types of traits affected by introgression. To address these questions, 525 animals were characterized using a SNP array to detect genomic regions that had been introgressed from European to indigenous Chinese breeds. The functions of genes located in introgressed regions were also investigated. Our data show that five out of six indigenous Chinese breeds show evidence of introgressions from Western pigs, and eight introgressed genome regions are shared by five of the Chinese breeds. A region located on chr13: 12.8M~13.1M was affected by both introgression and artificial selection, and this region contains the glucose absorption related gene, <i>OXSM</i>, and the sensory related gene, <i>NGLY</i>. The results provide a foundation for understanding introgression from Western to indigenous Chinese pigs.
DOI: 10.6084/m9.figshare.11911365
title: absoluteabundance.xlsx

description: Absolute reads from AGRF<br>
DOI: 10.6084/m9.figshare.11911368.v1
title: otu_table.xlsx

description: Otu Table from trinity gardens project<br>
DOI: 10.6084/m9.figshare.11911389.v3
title: Effects of air-sea coupling and ocean mean state on BSISO in SP GCMs: Dataset

description: The effect of air-sea coupling on the simulated boreal summer intraseasonal oscillation (BSISO) is examined using atmosphere—ocean-mixed-layer coupled (SPCAM3-KPP) and uncoupled configurations of the Super-Parameterized (SP) Community Atmospheric Model, version 3 (SPCAM3). The coupled configuration is constrained to either the observed ocean mean state or the mean state from the SP coupled configuration with a dynamic ocean (SPCCSM3), to understand the effect of mean state biases on the BSISO in the latter. All configurations overestimate summer mean subtropical rainfall and its intraseasonal variance. All configurations simulate realistic BSISO northward propagation over the Indian Ocean and western Pacific, in common with other SP configurations.Constraining SPCAM3-KPP to the SPCCSM3 mean state reduces the overestimated BSISO variability, but also weakens BSISO propagation. Using the SPCCSM3 mean state also introduces a one-month delay to the BSISO seasonal cycle compared to SPCAM3-KPP with the observed ocean mean state, which matches well with the reanalysis. The phase relationship between intraseasonal rainfall and sea surface temperature (SST) is captured by all coupled models, but with a shorter delay between suppressed convection and warm SST relative to the reanalysis. Prescribing the 31-day smoothed SSTs from the SPCAM3-KPP simulations in SPCAM3 worsens the overestimated BSISO variance. This suggests that air-sea coupling improves the amplitude of the simulated BSISO. Based on a Taylor diagram, SPCCSM3 mean state SST biases and air-sea coupling both lead to higher simulated BSISO fidelity, largely due to their ability to suppress the overestimated subtropical BSISO variance.
DOI: 10.6084/m9.figshare.11911335
title: JL R Script Trinity Gardens.txt

description: r script for james loader health supporting ecosystem services from urban greenspaces a school case study
DOI: 10.6084/m9.figshare.11911365.v1
title: absoluteabundance.xlsx

description: Absolute reads from AGRF<br>