cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3754788
title: Evaluation SIHUMI dataset: A sectioning and database enrichment approach for improved peptide spectrum matching in large, genome-guided protein sequence databases

description: Dataset for evaluation of database sectioning method for generating an enriched database for mass-spectrometry-based proteomic approaches using large databases. Our evaluation demonstrates that this method helps to increase the sensitivity of PSMs while maintaining acceptable FDR statistics. This dataset was acquired from the protein samples containing proteins from eight microorganisms (<em>Anaerostipes caccae, Bacteroides thetaiotaomicron, Bifidobacterium longum, Blautia producta, Clostridium butyricum, Clostridium ramosum, Escherichia coli, Lactobacillus plantarum</em>) that were grown in a bioreactor. The MS-data for this dataset was acquired by Dr. Hettich's group at Oak Ridge National Laboratory, and it was made available by Dr. Nico Jehmlich from Helmholtz Center for Environmental Research through the 3rd International Metaproteome Symposium (https://www.ufz.de/index.php?en=44639).
description: Sample: SIHUMI <br> <br> Protein extraction: Bead-beating in 4% SDS, 100 mM Tris-HCl, Chloroform-methanol extraction, resolubilized in 4% sodium deoxycholate (SDC) in 100 mM ammonium bicarbonate (ABC) buffer for digestion <br> Replicate: single extraction <br> Protein quantification: BCA assay <br> Protein concentration [µg/µl]: Peptide concentration after diegestion 1.783µg\µL <br> <br> Protein fractionation: <br> Digest type: On-filter (10kDa MWCO spin filters (Vivaspin 500, Sartorius)) <br> Digested protein amount [µg]: 250 µg <br> Reduction: 10mM DTT, 10 min, 85°C <br> Alkylation: 30mM Iodacetamide, RT, 20min, in the dark <br> Enzyme (enzym:protein-ratio): trypsin 1:75 <br> <br> Lyophilization: yes <br> <br> LC <br> Sample volume [µl]: 2µL <br> Loaded peptide approx. [µg]: 2µg <br> Trap column: direct loaded on to the analytical column <br> Separation column: 50 cm × 75 μm i.d. column packed with 1.7 μm Kinetex particle size Kinetex C18 <br> Flow rate nano pump [nl/min]: 250 <br> Length of gradient [min]: 240 min <br> <br> MS <br> Instrument: Thermo Fischer Q Exactive Plus <br> Measurement modus: DDA-Top 10 <br> Mass accuracy MS1: 5ppm <br> Mass accuracy MS2: 0.02 Da <br> Raw data format: raw <br> Raw data file(s): ORNL_Easy_nLC1200_contest2_C1_2ug_UHPLC_gradient240min_ac50cm.raw <br>
DOI: 10.5281/zenodo.3754789
title: Evaluation SIHUMI dataset: A sectioning and database enrichment approach for improved peptide spectrum matching in large, genome-guided protein sequence databases

description: Dataset for evaluation of database sectioning method for generating an enriched database for mass-spectrometry-based proteomic approaches using large databases. Our evaluation demonstrates that this method helps to increase the sensitivity of PSMs while maintaining acceptable FDR statistics. This dataset was acquired from the protein samples containing proteins from eight microorganisms (<em>Anaerostipes caccae, Bacteroides thetaiotaomicron, Bifidobacterium longum, Blautia producta, Clostridium butyricum, Clostridium ramosum, Escherichia coli, Lactobacillus plantarum</em>) that were grown in a bioreactor. The MS-data for this dataset was acquired by Dr. Hettich's group at Oak Ridge National Laboratory, and it was made available by Dr. Nico Jehmlich from Helmholtz Center for Environmental Research through the 3rd International Metaproteome Symposium (https://www.ufz.de/index.php?en=44639).
description: Sample: SIHUMI <br> <br> Protein extraction: Bead-beating in 4% SDS, 100 mM Tris-HCl, Chloroform-methanol extraction, resolubilized in 4% sodium deoxycholate (SDC) in 100 mM ammonium bicarbonate (ABC) buffer for digestion <br> Replicate: single extraction <br> Protein quantification: BCA assay <br> Protein concentration [µg/µl]: Peptide concentration after diegestion 1.783µg\µL <br> <br> Protein fractionation: <br> Digest type: On-filter (10kDa MWCO spin filters (Vivaspin 500, Sartorius)) <br> Digested protein amount [µg]: 250 µg <br> Reduction: 10mM DTT, 10 min, 85°C <br> Alkylation: 30mM Iodacetamide, RT, 20min, in the dark <br> Enzyme (enzym:protein-ratio): trypsin 1:75 <br> <br> Lyophilization: yes <br> <br> LC <br> Sample volume [µl]: 2µL <br> Loaded peptide approx. [µg]: 2µg <br> Trap column: direct loaded on to the analytical column <br> Separation column: 50 cm × 75 μm i.d. column packed with 1.7 μm Kinetex particle size Kinetex C18 <br> Flow rate nano pump [nl/min]: 250 <br> Length of gradient [min]: 240 min <br> <br> MS <br> Instrument: Thermo Fischer Q Exactive Plus <br> Measurement modus: DDA-Top 10 <br> Mass accuracy MS1: 5ppm <br> Mass accuracy MS2: 0.02 Da <br> Raw data format: raw <br> Raw data file(s): ORNL_Easy_nLC1200_contest2_C1_2ug_UHPLC_gradient240min_ac50cm.raw <br>
DOI: 10.5281/zenodo.3755200
title: Comparing Perturbation Modes for Evaluating Instabilities in Neuroimaging: Processed NKI-RS Subset (08/2019)

description: The processed subset of the NKI-RS dataset for evaluation of various perturbation modes when studying instabilities. Linked to the pre-print found here, can be visualized using the plotting code here, and generated with various scripts and launch configurations found here.
description: {"references": ["https://arxiv.org/abs/1908.10922"]}
DOI: 10.5281/zenodo.3755315
title: Seagrass biomechanics and flow-seagrass interactions data

description: This data package provides post-processed data used in the manuscript “Temporal variability in biomechanics and within-plant heterogeneity regulate flow-seagrass interactions”authored by Davide Vettori and Timothy I. Marjoribanks. The data package contains data obtained from direct measurement of maximum quantum yield of fluorescence, morphological characteristics and mechanical properties of the seagrass species <em>Zostera marina</em> collected in the Rodsand lagoon (DK). Further, data of seagrass drag force, biomass height, and deflected height computed by using a numerical model of flow-seagrass interactions are provided. The numerical model was parameterized using data from direct measurements.
DOI: 10.21227/5k0s-yx44
title: Data for paper "Mitigation of Subsynchronous Control Interactions Using Multi-Terminal DC Systems"

description: This PDF file contains the models and data of the case study used in the manuscript "Mitigation of Subsynchronous Control Interactions Using Multi-Terminal DC Systems"
DOI: 10.21227/k8rv-8w18
title: Data for paper "Mitigation of Subsynchronous Control Interactions Using Multi-Terminal DC Systems"

description: This PDF file contains the models and data of the case study used in the manuscript "Mitigation of Subsynchronous Control Interactions Using Multi-Terminal DC Systems"
DOI: 10.5281/zenodo.3755338
title: Controlled User Study: Usability and Efficiency Evaluation of the Parallel Performance Catalogue Extension for the Palladio-Bench

description: This repository contains the raw data for the user Study we conduction for the theses of Denis Zaharaive: Controlled User Study: Usability and Efficiency Evaluation of the Parallel Performance Catalogue Extension for the Palladio-Bench
DOI: 10.5281/zenodo.3755339
title: Controlled User Study: Usability and Efficiency Evaluation of the Parallel Performance Catalogue Extension for the Palladio-Bench

description: This repository contains the raw data for the user Study we conduction for the theses of Denis Zaharaive: Controlled User Study: Usability and Efficiency Evaluation of the Parallel Performance Catalogue Extension for the Palladio-Bench
DOI: 10.18112/openneuro.ds002712.v1.0.0
title: Numbers and Letters
DOI: 10.25739/6atr-5773
title: Plant CT

description: computed tomography dataset of soy, tomato, and wheat plants in weeks 2 through 5 of growth under high and low water conditions
DOI: 10.25919/5e98a7eba5074
title: Parkes observations for project P1041 semester 2020APRS_02

description: We recently discovered five millisecond pulsars (MSPs) in the globular cluster Omega Centauri. This is the first pulsar discovery in this globular cluster. Four of these pulsars are isolated with spin periods of 4.1, 4.2, 4.6 and 6.8ms. The fifth has a spin period of 4.8ms and is in an eclipsing binary system with an orbital period of 2.1 hours. We propose to carry out a timing campaign of these new pulsars in order to study the dynamics in the core of Omega Centauri, to reveal the origin of Gamma-ray emission from the core, and to probe the ionised interstellar medium in Omega Centauri. Our proposed observations will also enable us to carry out deeper searches of pulsars in the cluster.
DOI: 10.5258/soton/wp00651
title: Global 100m Mastergrids

description: National and subnational boundaries used in the framework of the Global Project - Funded by The Bill and Melinda Gates Foundation (OPP1134076)
DOI: 10.17632/mkv2wft75b.1
title: Data for: Rock strengthening or weakening upon heating?

description: Details of the reviewed rocks
DOI: 10.21223/p3/dccpqh/0aggel
title: Data_dictionary_v2.tab

description: :unav
DOI: 10.21223/p3/dccpqh/lxswto
title: Image_description_v2.tab

description: :unav
DOI: 10.21223/p3/dccpqh/qz8tfp
title: Minicore_2017_v2.tab

description: :unav
DOI: 10.6084/m9.figshare.3761562.v1454
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.15468/r27qes
title: Nebria (Pseudonebriola) tsambagarav sp. nov., a new alpine species from the Mongolian Altai (Coleoptera, Carabidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Huber, Charles, Schnitter, Peer Hajo (2020): Nebria (Pseudonebriola) tsambagarav sp. nov., a new alpine species from the Mongolian Altai (Coleoptera, Carabidae). Alpine Entomology 4: 29-38, DOI: http://dx.doi.org/10.3897/alpento.4.50408, URL: http://dx.doi.org/10.3897/alpento.4.50408
DOI: 10.17632/mkv2wft75b.2
title: Data for: Rock strengthening or weakening upon heating?

description: Details of the reviewed rocks
DOI: 10.21223/p3/dccpqh/w5xmlh
title: Images_v2.rar

description: :unav
DOI: 10.5281/zenodo.3754645
title: Profitability, energetics and GHGs emission estimation from rice-based cropping systems in the coastal saline zone of West Bengal, India

description: This study compares thirteen rice-based cropping systems in the coastal part of West Bengal, India in terms of productivity, profitability, energetics, and emissions. Information on the crop management practices of these systems was collected on 60 farms through a questionnaire survey.
description: This research was funded by the Australian Centre for International Agricultural Research (ACIAR) under the project "Cropping system intensification in the salt-affected coastal zone of Bangladesh and West Bengal, India (CSI4CZ)" (LWR/2014/073).
DOI: 10.5281/zenodo.3754646
title: Profitability, energetics and GHGs emission estimation from rice-based cropping systems in the coastal saline zone of West Bengal, India

description: This study compares thirteen rice-based cropping systems in the coastal part of West Bengal, India in terms of productivity, profitability, energetics, and emissions. Information on the crop management practices of these systems was collected on 60 farms through a questionnaire survey.
description: This research was funded by the Australian Centre for International Agricultural Research (ACIAR) under the project "Cropping system intensification in the salt-affected coastal zone of Bangladesh and West Bengal, India (CSI4CZ)" (LWR/2014/073).
DOI: 10.15468/zrrh8t
title: A new species of green pit vipers of the genus Trimeresurus Lacepede, 1804 (Reptilia, Serpentes, Viperidae) from western Arunachal Pradesh, India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mirza, Zeeshan A., Bhosale, Harshal S., Phansalkar, Pushkar U., Sawant, Mandar, Gowande, Gaurang G., Patel, Harshil (2020): A new species of green pit vipers of the genus Trimeresurus Lacepede, 1804 (Reptilia, Serpentes, Viperidae) from western Arunachal Pradesh, India. Zoosystematics and Evolution 96 (1): 123-138, DOI: http://dx.doi.org/10.3897/zse.96.48431, URL: http://dx.doi.org/10.3897/zse.96.48431
DOI: 10.15468/wa24th
title: Euploea dorippus Klug, 1845: species, semispecies, subspecies, junior subjective synonym of Danaus chrysippus chrysippus (Linnaeus), and / or form - what does Klug's dorippus represent? (Lepidoptera: Nymphalidae, Danainae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vane-Wright, Richard I. (2020): Euploea dorippus Klug, 1845: species, semispecies, subspecies, junior subjective synonym of Danaus chrysippus chrysippus (Linnaeus), and / or form - what does Klug's dorippus represent? (Lepidoptera: Nymphalidae, Danainae). Nota Lepidopterologica 43: 117-138, DOI: http://dx.doi.org/10.3897/nl.43.47936, URL: http://dx.doi.org/10.3897/nl.43.47936
DOI: 10.15468/zxwss3
title: First description of the female of Letana mursinga Ingrisch & Shishodia, 2000 (Orthoptera: Tettigoniidae; Phaneropterinae; Letanini) from India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kumar, Hirdesh, Chandra, Kailash (2020): First description of the female of Letana mursinga Ingrisch & Shishodia, 2000 (Orthoptera: Tettigoniidae; Phaneropterinae; Letanini) from India. Zootaxa 4729 (4): 589-594, DOI: 10.11646/zootaxa.4729.4.10
DOI: 10.5258/soton/wp00652
title: Global 100m Gridcell Area

description: Grid-cell land surface area matching the Global Mastergrids
DOI: 10.5281/zenodo.3755010
title: High Throughput Pipeline for Segmentation and Defect Identification

description: HRTEM micrographs of gold and cadmium selenide nanoparticles and corresponding semantic segmentation maps for neural network training.
DOI: 10.5281/zenodo.3755011
title: High Throughput Pipeline for Segmentation and Defect Identification

description: HRTEM micrographs of gold and cadmium selenide nanoparticles and corresponding semantic segmentation maps for neural network training.
DOI: 10.15468/w6rxsr
title: Redescription of Ploiaria mellea (Heteroptera: Reduviidae: Emesinae) and its first report from India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Boyane, Swapnil S., Ghate, Hemant V. (2020): Redescription of Ploiaria mellea (Heteroptera: Reduviidae: Emesinae) and its first report from India. Zootaxa 4729 (4): 595-600, DOI: 10.11646/zootaxa.4729.4.11
DOI: 10.25345/c53d8m
title: MassIVE MSV000085297 - LC-MS/MS data of an acetylcholinesterase inhibitory and antioxidant fractioned extract F-11-1-B of a marine fungus Aspergillus terreus C23-3
title: This marine fungal fractional extract showed potent AChE inhibitory and antioxidant activities. Then, it was analysed by LC-MS2 and the mzXML data was sumbitted to GNPS.
DOI: 10.17632/3zy2f7zfy8.3
title: Data for: WHEN BASIC SUPPLIES ARE MISSING, WHAT TO DO? SPECIFIC DEMANDS OF THE LOCAL STREET POPULATION IN TIMES OF CORONAVIRUS – A CONCERN OF SOCIAL PSYCHIATRY

description: Homeless experts and some federal housing officials are sounding the alarm that the patchwork of government efforts to address the coronavirus outbreak risks leaving out one group of acutely vulnerable people: the homeless. In terms of isolation, it is too unclear what that looks like if you normally sleep on the streets. In this tough moment, when people should be turned away, not only it feels inhumane, but it is also a big public health risk, because where are they going to go? With more cities suspecting community transmission of the novel coronavirus, people who sleep in shelters or hunker down outside already have a lower life expectancy and often have underlying health conditions that put them at greater risk if they develop COVID-19. A large population of homeless people experience their pain and psychological distress intermittently. For low-income patients, the various borderline situations related to health/illness involve growing expectations regarding the basic needs. This is a serious concern when linked to the pandemic
DOI: 10.15468/sun52v
title: First record of the rare Wide-mouth flounder Kamoharaia megastoma (Kamohara, 1936) (Pleuronectiformes, Bothidae) from the western Indian Ocean collected during the ATIMO VATAE expedition to Madagascar “ Deep South ”

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lisher, Mark W., Gon, Ofer, Heemstra, Elaine, Viana, Sarah T. F. L. (2020): First record of the rare Wide-mouth flounder Kamoharaia megastoma (Kamohara, 1936) (Pleuronectiformes, Bothidae) from the western Indian Ocean collected during the ATIMO VATAE expedition to Madagascar “ Deep South ”. Zoosystema 42 (11): 151-157, DOI: 10.5252/zoosystema2020v42a11
DOI: 10.15468/yhp76g
title: Agathidium mexicanum Hendrichs, 1979: Types rediscovered

description: This dataset contains the digitized treatments in Plazi based on the original journal article Navarrete-Heredia, José L., Sandoval, Liliana P., Zaragoza-Caballero, Santiago (2020): Agathidium mexicanum Hendrichs, 1979: Types rediscovered. Zootaxa 4731 (2): 295-296, DOI: 10.11646/zootaxa.4731.2.11
DOI: 10.5281/zenodo.3753896
title: Repository for data used in STOTEN article "Impacts of town characteristics on the changing urban climate in Vantaa"

description: This dataset contains data used in the Science of The Total Environment journal article "Impacts of town characteristics on the changing urban climate in Vantaa" (https://doi.org/10.1016/j.scitotenv.2020.138471). The dataset includes: SURFEX air-surface interaction model results Observations from Helsinki-Vantaa airport SURFEX.zip contains SURFEX outputs used in the results section of the article. Verification_data.zip contains SURFEX outputs and meteorological observations used in the verification section of the article. E104.zip, E106.zip, E204.zip and E206.zip contain full SURFEX outputs for the four experiments conducted: A synthetic reference year representing the climate of the period 1980-2009 with no intervention (E104) and with green intervention (E106) and similarly for 2050s climate (E204 and E206). The STOTEN article "Impacts of town characteristics the changing urban climate in Vantaa" by Olli Saranko, Carl Fortelius, Kirsti Jylhä, Kimmo Ruosteenoja, Erika Brattich, Silvana Di Sabatino and Väinö Nurmi is provided in pdf-file 1-s2.0-S0048969720319847-main.pdf. The article is published in Science of The Total Environment journal, and is under a Creative Commons license (https://creativecommons.org/licenses/by-nc-nd/4.0/). This version is the pre-proof version.
DOI: 10.5281/zenodo.3753897
title: Repository for data used in STOTEN article "Impacts of town characteristics on the changing urban climate in Vantaa"

description: This dataset contains data used in the Science of The Total Environment journal article "Impacts of town characteristics on the changing urban climate in Vantaa" (https://doi.org/10.1016/j.scitotenv.2020.138471). The dataset includes: SURFEX air-surface interaction model results Observations from Helsinki-Vantaa airport SURFEX.zip contains SURFEX outputs used in the results section of the article. Verification_data.zip contains SURFEX outputs and meteorological observations used in the verification section of the article. E104.zip, E106.zip, E204.zip and E206.zip contain full SURFEX outputs for the four experiments conducted: A synthetic reference year representing the climate of the period 1980-2009 with no intervention (E104) and with green intervention (E106) and similarly for 2050s climate (E204 and E206). The STOTEN article "Impacts of town characteristics the changing urban climate in Vantaa" by Olli Saranko, Carl Fortelius, Kirsti Jylhä, Kimmo Ruosteenoja, Erika Brattich, Silvana Di Sabatino and Väinö Nurmi is provided in pdf-file 1-s2.0-S0048969720319847-main.pdf. The article is published in Science of The Total Environment journal, and is under a Creative Commons license (https://creativecommons.org/licenses/by-nc-nd/4.0/). This version is the pre-proof version.
DOI: 10.17037/data.00001699
title: Data for: Feasibility of village health teams (VHTs) in using a smart phone guided intervention to link older Ugandans with chronic conditions to care

description: This data collection was produced as part of a feasibility study to determine if Village Health Teams (VHTs) could be effectively trained to use smart phone guided intervention when supporting older people with chronic conditions in the Kalungu district in south-western Uganda. This would involve the use of smart phones to record information on residents and using it to link them to health facilities for the purpose of treatment and care. The collection consists of 20 transcribed interviews, each of which was conducted with a village health team member. Transcripts contain variables on demographic characteristics, activities for VHTs, dealing with older people, linking older people with health problems to care, knowledge on chronic diseases, experiences in using smart phones and willingness to use a smartphone guided intervention in future.
description: Face-to-face interviews were captured using audio recording and note taking. All data were captured from a secure room at a health facility within the study setting
DOI: 10.5255/ukda-sn-854132
title: When is capital enough to get female micro enterprises growing? Evidence from a randomised experiment in Ghana 2010-2015
DOI: 10.6073/pasta/4b8f640fc477f2405ddf697dbb4522c6
title: PIE LTER transects of the Parker River Plum Island Sound Estuary, Massachusetts conducted at dawn and dusk, containing dissolved oxygen, conductivity, temperature, percent saturation, pH, DIC and pCO2 data.

description: Multi-year transects, beginning in 1995, of the Parker River Plum Island Sound Estuary conducted at dawn and dusk, containing dissolved oxygen, conductivity, temperature, percent saturation, pH, DIC and pCO2 measurements. Differences between dawn and dusk measurements can be used to determine the water metabolism and corresponding estimates of gross primary production, total system respiration and net ecosystem production.
DOI: 10.15468/awefbc
title: Homalosphodrus Stål, 1867 (Insecta: Heteroptera: Reduviidae): a junior objective synonym of Parsialus Stål, 1863

description: This dataset contains the digitized treatments in Plazi based on the original journal article Swanson, Daniel R. (2020): Homalosphodrus Stål, 1867 (Insecta: Heteroptera: Reduviidae): a junior objective synonym of Parsialus Stål, 1863. Zootaxa 4742 (2): 398-400, DOI: 10.11646/zootaxa.4742.2.13
DOI: 10.15468/4upthf
title: Analyses of Soft Tissue from Tyrannosaurus rex Suggest the Presence of Protein

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mary Higby Schweitzer, Zhiyong Suo, Recep Avci, John M. Asara, Mark A. Allen, Fernando Teran Arce, John R. Horner (2007): Analyses of Soft Tissue from Tyrannosaurus rex Suggest the Presence of Protein. Science 316: 277-280, DOI: 10.1126/science.1138709
DOI: 10.15468/yufgqv
title: A new genus of Hoplojassini from French Guiana (Hemiptera: Cicadellidae Iassinae) and identification key for species of tribe

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gonçalves, Clayton Corrêa, Dietrich, Christopher H., Takiya, Daniela Maeda (2020): A new genus of Hoplojassini from French Guiana (Hemiptera: Cicadellidae Iassinae) and identification key for species of tribe. Zootaxa 4742 (2): 351-358, DOI: 10.11646/zootaxa.4742.2.8
DOI: 10.25345/c5kh67
title: MassIVE MSV000085301 - Functional proteome analysis of placenta membrane associated with preterm birth
title: In this study, the molecular signature of placenta membrane from preterm birth placenta was assessed and compared to full-term placenta by proteomic profiling with the aim to identify molecules relevant to preterm birth.