cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7637021.v1
title: Species limits in butterflies (Lepidoptera: Nymphalidae): Reconciling classical taxonomy with the multispecies coalescent

description: You can find all the necessary input files for species delimitation and phylogenetic inference, as well as all MCC trees inferred using starBEAST2:<br>A. BP&P -&gt; ctl, Imap, sequences, heredity files, for Pierella and the clearwings clade (Total files: 7 input files)<br>B. STACEY -&gt; xml files for w=species and w=subspecies (Total files: 2 input files)<br>C. starBEAST2 -&gt; xml and MCC tree files for species and subspecies models (Total files: 6 input files and 6 tree files)<br>
DOI: 10.7284/111958
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN500 using a Trimble NT-300D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7637036.v1
title: Metabarcoding_inner_Oslofjord_2016_2017.xlsx

description: Samples was collected in the inner Oslofjord at 0-2m and 5m. 2L of water was filtered trough a 0.22 Sterivex-filter. DNA- was exstracted using Qiagen DNeasy Power Water Sterivex Kit (Qiagen, Germany) following protocol.Illumina sequences was filtered with a modified pipeline designed for Illumina Sequences (Ramiro Logares, 2007)<br><br>
DOI: 10.7284/108773
title: Gyrocompass data collected during research cruise EN500 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7636997
title: Carabus uenoi proteins BUSCO results

description: Results of BUSCO analysis of Carabus uenoi protein set.
DOI: 10.6084/m9.figshare.7637018.v2
title: Data from: Progressive changes in the protein composition of human follicular fluid during the course of ovulation: quantitative proteomic analysis.

description: The supplementary tables list proteins identified in human follicular fluid in relation to ovulation from the present study and previous studies. Valid accesion numbers, protein names and protein symbols are available for all identified proteins.
DOI: 10.6084/m9.figshare.7636997.v1
title: Carabus uenoi proteins BUSCO results

description: Results of BUSCO analysis of Carabus uenoi protein set.
DOI: 10.6084/m9.figshare.7637018.v1
title: Dynamic changes in human follicular fluid composition assessed by quantitative proteomic analysis during ovulation

description: The supplementary tables list proteins identified in human follicular fluid in relation to ovulation from the present study and previous studies. Valid accesion numbers, protein names and protein symbols are available for all identified proteins.
DOI: 10.7284/108774
title: Gyrocompass data collected during research cruise EN500 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7636982
title: Team-based musculoskeletal assessment and healthcare quality indicators: A systematic review

description: The primary objective of this review was to describe health quality indicator (HQI) outcomes of team-based musculoskeletal (MSK) assessments aimed at directing patient care. Secondary objectives included determining the most commonly assessed HQIs, extent of team collaboration, and the healthcare practitioners that most commonly comprise MSK-assessment teams. This review was registered in the PROSPERO database and conducted according to PRISMA guidelines. Five databases were systematically searched to August 2017. Studies selected met a priori inclusion criteria and investigated an HQI outcome of a primary or intermediate care MSK team-based assessment aimed at directing treatment. Two independent raters assessed study quality [Downs and Black (DB) criteria] and level of evidence (Oxford Centre of Evidence-Based Medicine model). Ten studies were included. The majority were low-quality [median DB score 14/32 (range 6–18)] pre-experimental studies (level 4 evidence). Heterogeneity in methodology and HQIs precluded meta-analyses. Hospital length-of-stay (LOS; 3/10 studies) and pain level (3/10) were the most common HQIs investigated. Teams (9/10) were most commonly comprised of a physiotherapist and another healthcare practitioner. Most teams (8/10) demonstrated low-levels of collaboration. There is limited low-level evidence to suggest that team-based MSK assessments are associated with improved clinical outcomes (i.e., pain, quality-of-life) and shorter LOS.
DOI: 10.6084/m9.figshare.7636982.v1
title: Team-based musculoskeletal assessment and healthcare quality indicators: A systematic review

description: The primary objective of this review was to describe health quality indicator (HQI) outcomes of team-based musculoskeletal (MSK) assessments aimed at directing patient care. Secondary objectives included determining the most commonly assessed HQIs, extent of team collaboration, and the healthcare practitioners that most commonly comprise MSK-assessment teams. This review was registered in the PROSPERO database and conducted according to PRISMA guidelines. Five databases were systematically searched to August 2017. Studies selected met a priori inclusion criteria and investigated an HQI outcome of a primary or intermediate care MSK team-based assessment aimed at directing treatment. Two independent raters assessed study quality [Downs and Black (DB) criteria] and level of evidence (Oxford Centre of Evidence-Based Medicine model). Ten studies were included. The majority were low-quality [median DB score 14/32 (range 6–18)] pre-experimental studies (level 4 evidence). Heterogeneity in methodology and HQIs precluded meta-analyses. Hospital length-of-stay (LOS; 3/10 studies) and pain level (3/10) were the most common HQIs investigated. Teams (9/10) were most commonly comprised of a physiotherapist and another healthcare practitioner. Most teams (8/10) demonstrated low-levels of collaboration. There is limited low-level evidence to suggest that team-based MSK assessments are associated with improved clinical outcomes (i.e., pain, quality-of-life) and shorter LOS.
DOI: 10.7284/107378
title: Singlebeam Echosounder data collected during research cruise EN500 using a Knudsen 320B/R instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7636970
title: Energy planning tools for low carbon transitions: an example of a multicriteria spatial planning tool for district heating

description: Energy planning tools can support transitions to low carbon energy by helping planners to identify technology options and scenarios. Exploring a case study of district heating development to support heat decarbonisation in the United Kingdom (UK), this article uses thematic analysis of qualitative semistructured interviews conducted between May 2013 and August 2015 with local and regional government officials, in order to consider how energy planning decision-making tools can be designed to support the early stages of low carbon transitions as a form of strategic niche management. The findings of this analysis are then tested through the development of a spatial heat planning tool covering England and Wales, designed to respond to the needs of niche actors seeking to facilitate early development of district heating projects. The tool is for use by local government actors as they seek to build social networks of stakeholders to support the technology change, to demonstrate its value and to support skills development. The research shows the importance of designing flexible tools which can go beyond techno-economic criteria and reflect the wider motivations and decision criteria of local actors, including social criteria.
DOI: 10.7284/108776
title: Speedlog data collected during research cruise EN500 using a EDO MRQ-4015D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7636967
title: Rice breeding program simulation data for genetic gain estimation method assessment

description: Pedigree and phenotypic data from simulation data used to assess methods for estimating the rate of genetic gain realized by a breeding program. This data was used in the article "Estimation of realized rates of genetic gain and indicators for breeding program assessment" by Jessica Rutkoski
DOI: 10.6084/m9.figshare.7636970.v1
title: Energy planning tools for low carbon transitions: an example of a multicriteria spatial planning tool for district heating

description: Energy planning tools can support transitions to low carbon energy by helping planners to identify technology options and scenarios. Exploring a case study of district heating development to support heat decarbonisation in the United Kingdom (UK), this article uses thematic analysis of qualitative semistructured interviews conducted between May 2013 and August 2015 with local and regional government officials, in order to consider how energy planning decision-making tools can be designed to support the early stages of low carbon transitions as a form of strategic niche management. The findings of this analysis are then tested through the development of a spatial heat planning tool covering England and Wales, designed to respond to the needs of niche actors seeking to facilitate early development of district heating projects. The tool is for use by local government actors as they seek to build social networks of stakeholders to support the technology change, to demonstrate its value and to support skills development. The research shows the importance of designing flexible tools which can go beyond techno-economic criteria and reflect the wider motivations and decision criteria of local actors, including social criteria.
DOI: 10.6084/m9.figshare.7636967.v1
title: Rice breeding program simulation data for genetic gain estimation method assessment

description: Pedigree and phenotypic data from simulation data used to assess methods for estimating the rate of genetic gain realized by a breeding program. This data was used in the article "Estimation of realized rates of genetic gain and indicators for breeding program assessment" by Jessica Rutkoski
DOI: 10.7284/108775
title: TSG (Thermosalinograph) data collected during research cruise EN500 using a Sea-Bird SBE-45 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7636934
title: Gyp1 has a dual function as Ypt1 GAP and interaction partner of Atg8 in selective autophagy

description: Macroautophagy/autophagy is a highly conserved intracellular vesicle transport pathway that prevents accumulation of harmful materials within cells. The dynamic assembly and disassembly of the different autophagic protein complexes at the so-called phagophore assembly site (PAS) is strictly regulated. Rab GTPases are major regulators of cellular vesicle trafficking, and the Rab GTPase Ypt1 and its GEF TRAPPIII have been implicated in autophagy. We show that Gyp1 acts as a Ypt1 GTPase-activating protein (GAP) for selective autophagic variants, such as the Cvt pathway or the selective autophagic degradation of mitochondria (mitophagy). Gyp1 regulates the dynamic disassembly of the conserved Ypt1-Atg1 complex. Thereby, Gyp1 sets the stage for efficient Atg14 recruitment, and facilitates the critical step from nucleation to elongation of the phagophore. In addition, we identified Gyp1 as a new Atg8-interacting motif (AIM)-dependent Atg8 interaction partner. The Gyp1 AIM is required for efficient formation of the cargo receptor-Atg8 complexes. Our findings elucidate the molecular mechanisms of complex disassembly during phagophore formation and suggest potential dual functions of GAPs in cellular vesicle trafficking. <b>Abbreviations</b> AIM, Atg8-interacting motif; Atg, autophagy related; Cvt, cytoplasm-to-vacuole targeting; GAP, GTPase-activating protein; GEF, guanine-nucleotide exchange factor; GFP, green fluorescent protein; log phase, logarithmic growth phase; NHD, N-terminal helical domain; PAS, phagophore assembly site; PE, phosphatidylethanolamine; PtdIns3P, phosphatidylinositol-3-phosphate; WT, wild-type
DOI: 10.7284/108777
title: TSG (Thermosalinograph) data collected during research cruise EN500 using a Sea-Bird SBE-21 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7636922
title: Dataset - A Comprehensive Methodology to Evaluate Losses and Process Variations in Silicon Solar Cell Manufacturing

description: This dataset contains detailed performance loss analysis results of approximately 400 industrial crystalline silicon solar cells, all coming from the same production line. The characterization sequence combines traditional global cell measurements (e.g., current-voltage, Suns-<i>V</i><sub>OC</sub>) with camera-based cell imaging of voltage distribution and power dissipation from photoluminescence and lock-in thermography, respectively. Spatial variations in current collection are visualized using a high-speed external quantum efficiency and reflectance measurement technique. A non-destructive transfer length method (TLM) measurement technique is also implemented, featuring circular TLM structures hidden within the busbars of the cells. The variance of individual loss parameters and their impact on cell performance are quantified for this large group of cells.
DOI: 10.6084/m9.figshare.7636934.v2
title: Gyp1 has a dual function as Ypt1 GAP and interaction partner of Atg8 in selective autophagy

description: Macroautophagy/autophagy is a highly conserved intracellular vesicle transport pathway that prevents accumulation of harmful materials within cells. The dynamic assembly and disassembly of the different autophagic protein complexes at the so-called phagophore assembly site (PAS) is strictly regulated. Rab GTPases are major regulators of cellular vesicle trafficking, and the Rab GTPase Ypt1 and its GEF TRAPPIII have been implicated in autophagy. We show that Gyp1 acts as a Ypt1 GTPase-activating protein (GAP) for selective autophagic variants, such as the Cvt pathway or the selective autophagic degradation of mitochondria (mitophagy). Gyp1 regulates the dynamic disassembly of the conserved Ypt1-Atg1 complex. Thereby, Gyp1 sets the stage for efficient Atg14 recruitment, and facilitates the critical step from nucleation to elongation of the phagophore. In addition, we identified Gyp1 as a new Atg8-interacting motif (AIM)-dependent Atg8 interaction partner. The Gyp1 AIM is required for efficient formation of the cargo receptor-Atg8 complexes. Our findings elucidate the molecular mechanisms of complex disassembly during phagophore formation and suggest potential dual functions of GAPs in cellular vesicle trafficking. <b>Abbreviations</b> AIM, Atg8-interacting motif; Atg, autophagy related; Cvt, cytoplasm-to-vacuole targeting; GAP, GTPase-activating protein; GEF, guanine-nucleotide exchange factor; GFP, green fluorescent protein; log phase, logarithmic growth phase; NHD, N-terminal helical domain; PAS, phagophore assembly site; PE, phosphatidylethanolamine; PtdIns3P, phosphatidylinositol-3-phosphate; WT, wild-type
DOI: 10.7284/107274
title: Winch data collected during research cruise EN500 using a Markey DUSH-5 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107277
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN501 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7636922.v1
title: Dataset - A Comprehensive Methodology to Evaluate Losses and Process Variations in Silicon Solar Cell Manufacturing

description: This dataset contains detailed performance loss analysis results of approximately 400 industrial crystalline silicon solar cells, all coming from the same production line. The characterization sequence combines traditional global cell measurements (e.g., current-voltage, Suns-<i>V</i><sub>OC</sub>) with camera-based cell imaging of voltage distribution and power dissipation from photoluminescence and lock-in thermography, respectively. Spatial variations in current collection are visualized using a high-speed external quantum efficiency and reflectance measurement technique. A non-destructive transfer length method (TLM) measurement technique is also implemented, featuring circular TLM structures hidden within the busbars of the cells. The variance of individual loss parameters and their impact on cell performance are quantified for this large group of cells.
DOI: 10.6084/m9.figshare.7636934.v1
title: Gyp1 has a dual function as Ypt1 GAP and interaction partner of Atg8 in selective autophagy

description: Macroautophagy/autophagy is a highly conserved intracellular vesicle transport pathway that prevents accumulation of harmful materials within cells. The dynamic assembly and disassembly of the different autophagic protein complexes at the so-called phagophore assembly site (PAS) is strictly regulated. Rab GTPases are major regulators of cellular vesicle trafficking, and the Rab GTPase Ypt1 and its GEF TRAPPIII have been implicated in autophagy. We show that Gyp1 acts as a Ypt1 GTPase-activating protein (GAP) for selective autophagic variants, such as the Cvt pathway or the selective autophagic degradation of mitochondria (mitophagy). Gyp1 regulates the dynamic disassembly of the conserved Ypt1-Atg1 complex. Thereby, Gyp1 sets the stage for efficient Atg14 recruitment, and facilitates the critical step from nucleation to elongation of the phagophore. In addition, we identified Gyp1 as a new Atg8-interacting motif (AIM)-dependent Atg8 interaction partner. The Gyp1 AIM is required for efficient formation of the cargo receptor-Atg8 complexes. Our findings elucidate the molecular mechanisms of complex disassembly during phagophore formation and suggest potential dual functions of GAPs in cellular vesicle trafficking. <b>Abbreviations</b> AIM, Atg8-interacting motif; Atg, autophagy related; Cvt, cytoplasm-to-vacuole targeting; GAP, GTPase-activating protein; GEF, guanine-nucleotide exchange factor; GFP, green fluorescent protein; log phase, logarithmic growth phase; NHD, N-terminal helical domain; PAS, phagophore assembly site; PE, phosphatidylethanolamine; PtdIns3P, phosphatidylinositol-3-phosphate; WT, wild-type
DOI: 10.7284/107382
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise EN501 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108784
title: Fluorometer data collected during research cruise EN501 using a Turner 10-AU instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7636853
title: MOESM4 of A low-cost and open-source platform for automated imaging

description: Additional file 4. A bill of materials listing the suppliesÂ used to construct Hyperscanner. Does not list tools.
DOI: 10.6084/m9.figshare.7636853.v1
title: MOESM4 of A low-cost and open-source platform for automated imaging

description: Additional file 4. A bill of materials listing the suppliesÂ used to construct Hyperscanner. Does not list tools.
DOI: 10.7284/103266
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN501 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107380
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN501 using a Furuno GP-90D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7636715
title: SNPs for 263 peach accessions

description: SNPs used for adaptation analyese of 263 peach accessions.
DOI: 10.6084/m9.figshare.7636721
title: SVs for peach sequencing

description: SVs for 263 peach accessions.<br>
DOI: 10.6084/m9.figshare.7636721.v1
title: SVs for peach sequencing

description: SVs for 263 peach accessions.<br>
DOI: 10.7284/111957
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN501 using a Trimble NT-300D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7636706.v1
title: Allometric tail spine

description: The ontogenetic allometry of tail spine in relation to body length in four species of <i>Daphnia</i> and four clones of<i> Daphnia mitsukuri </i>under different kairomone treatments.
DOI: 10.7284/108779
title: Gyrocompass data collected during research cruise EN501 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7636652
title: How do Local Earthquake Tomography and inverted dataset affect earthquake locations? The case study of High Agri Valley (Southern Italy)

description: Local earthquake tomography allows to both image the subsurface elastic properties of an area and to locate earthquakes. In this work, we discuss the choice of best parameterization in a tomographic model and the influence of retrieved velocity models on the accuracy of earthquake location in the High Agri Valley, southern Italy. The tomographic inversions were carried out with two datasets (dataset A and dataset B). Dataset B was obtained by integrating in the dataset A the data recorded by a very dense seismic network deployed around a specific cluster of seismicity. Velocity models obtained from the inversion of the two datasets are characterized by the same parameterization. However, the anomalies retrieved by the inversion of the second dataset look more reliable, based on results of checkerboard test. The retrieved 3D velocity model contributed to improve the accuracy of earthquake locations with respect to the 1D model. Data recorded by a very dense network in dataset B further contributed to reduce the errors and to improve the clustering of hypocentral positions of the best azimuthally covered cluster of seismicity. The importance of a 3D velocity model and of a proper network geometry for earthquake location is therefore demonstrated.
DOI: 10.7284/108780
title: Gyrocompass data collected during research cruise EN501 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7636646.v1
title: RNA cleavage by Lassa fever virus L protein and Mutants

description: RNA cleavage activity of Lassa fever virus L protein and mutants<br>
DOI: 10.6084/m9.figshare.7636601
title: Factors influencing traffic accident frequencies on urban roads a spatial panel time-fixed effects error model

description: This is the dataset for the paper named "Factors influencing traffic accident frequencies on urban roads: a spatial panel time-fixed effects error model" published in PLOS ONE.
DOI: 10.6084/m9.figshare.7636601.v1
title: Factors influencing traffic accident frequencies on urban roads a spatial panel time-fixed effects error model

description: This is the dataset for the paper named "Factors influencing traffic accident frequencies on urban roads: a spatial panel time-fixed effects error model" published in PLOS ONE.