cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.kh186/1
title: Unconstrained Nrf2 Bayesian phylogenetic tree and Nrf2 coding sequences

description: This is an NEXUS file,which including the Nrf2 coding sequences from 21 mammals  and a unconstrained Nrf2 Bayesian phylogenetic tree. A Bayesian phylogenetic  tree was reconstructed based on the aligned Nrf2 nucleotide sequences using MrBayes 3.1.2. Values on the nodes are posterior probabilities.The branch length information is also included. Nrf2 coding sequence from 21 species used in this study, including 16 chiropteran species and 5 other mammals.The species we used in this study are listed as follow.Cynopterus sphinx,Rousettus leschenaultia,Pteropus vampyus,Pteropus alecto,Artibeus jamaicensis, Pteronotus parnelli,Myotis ricketti,Myotis brandtti, Myotis davidii, Myotis lucifugus, Pipistrellus abramus, Hipposideros pratti, Rhinolophus pusillus, Megaderma lyra, Megaderma spasma, Taphozous melanopogon, Homo sapiens, Pan troglodytes,Canis familiaris,Bos taurus, Ictidomys tridecemlineatus.
DOI: 10.5061/dryad.kh186/2
title: Unconstrained Nrf2 Bayesian phylogenetic tree and species tree

description: This is a TIFF picture of Unconstrained Nrf2 Bayesian phylogenetic tree and species tree.
DOI: 10.5061/dryad.ns657/1
title: Microsatellite binary data of Moniliophthora roreri isolates

description: These microsatellite data was used to perform association and linkage disequilibrium analysis in forty isolates of M. roreri. There are in total forty alleles found in eleven microsatellite markers tested.
DOI: 10.5061/dryad.ns657/2
title: GBlocks alignment of ITS sequences of Marasmiineae species

description: This files contains the GBlocks alignment used to perform the phylogenetic and ancestral reconstruction state of species within the most representative families in the Marasmiineae.
DOI: 10.5061/dryad.q0694/2
title: Raw micro-satellite data for 14 Rye populations

description: Raw micro-satellite data in arp format with original population names. The populations are grouped following the three classes described in the article at the end of the data file. Missing information is coded with a "?" and null alleles are coded with a "0".
DOI: 10.5061/dryad.q0694/3
title: PCR Primers and PCR Conditions

description: A comma separated file containing the primers of the PCR, their source, and the PCR conditions. The legend for the sources and the abbreviations for the PCR conditions can be found in the ReadMe file.
DOI: 10.5061/dryad.sh537/1
title: Datasets_Vasse_et_al_2015

description: Contains all datasets from the experiments and assays conducted in the  paper "Phage selection for bacterial cheats leads to population decline". Each dataset is on a separate spredsheet. Includes (i) densities and frequencies over the evolution experiment, (ii) resistance to phages, (iii) phage fitness, (iv) pyoverdin measurements in evolved populations and (v) growth and pyoverdin assays.
DOI: 10.5061/dryad.t8344/1
title: Data Average Fitness Measures

description: key to terminology in file: set = 1/2; population 1= Galante Winery 2= Mayo Winery; LCI = laval competitive index; MCI = male competitive index. Cum Fitness = Cumulative fitness. Each value is the average across replicate vials
DOI: 10.5061/dryad.0279k/5
title: Functional Connectivity MRI Data Part 4

description: Individual EPI and structural scans for two sea lion subjects in nifti format. EPI data represents 15 minutes of continuous BOLD data under gas anesthesia.
DOI: 10.5061/dryad.0279k/6
title: Functional Connectivity MRI Data Part 5

description: Individual EPI and structural scans for two sea lion subjects, in nifti format. EPI data represents 15 minutes of continuous BOLD acquisition under gas anesthesia.
DOI: 10.5061/dryad.0279k/7
title: Functional Connectivity MRI Data Part 6

description: Individual EPI and structural scans for one sea lion subject, in nifti format. EPI data represents 15 minutes of continuous BOLD acquisition under gas anesthesia.
DOI: 10.5061/dryad.0r31r/1
title: Ages and eye lens masses of the 111 known-age hog deer used in our analyses.

description: The data file is composed of two named columns. 'Age' is the age (days) of the hog deer since birth. 'Mass' is the eye lens dry mass (g) for either (i) the heaviest of the two eye lenses (if two eye lenses were collected) or (ii) the one eye lens if only one eye lens was collected. There are data for 111 hog deer (i.e. one individual per row). Ages range from 130 to 5393 days and eye lens dry masses range from 0.2092 to 0.5485 g.
DOI: 10.5061/dryad.1fj40/1
title: Regional adaptation phenotype data

description: Data on seven species, eight origins, grown in four common gardens (detailed description in the connected publication).
DOI: 10.5061/dryad.1hn2b/1
title: Coastal Wetland Belowground Biomass

description: These data were collected in the field in 2008 from a Sagittaria lancifolia L. dominated, oligohaline marsh located along the west bank of the Tchefuncte River, approximately 1 km north of Lake Pontchartrain, LA, USA (30° 23.205’N, 90° 09.551’ W). Two methods were used to estimate belowground biomass: the ingrowth method and the standing crop method. Abbreviated headings are as follows: "Block" = statistical block; "N" = nitrogen enrichment treatment (kg/ha/yr); "P" = phosphorus enrichment treatment (kg/ha/yr); "LRoot IG" = live root biomass in ingrowth cores (g/m2); "LRhiz IG" = live rhizome biomass in ingrowth cores (g/m2); "Live IG" = live root+rhizome biomass in ingrowth cores (g/m2); "Dead IG" = dead root+rhizome biomass in ingrowth cores (g/m2); "Total IG" = total live+dead biomass in ingrowth cores (g/m2);  "LRoot SC" = live root biomass in standing crop cores (g/m2); "LRhiz SC" = live rhizome biomass in standing crop cores (g/m2); "Live SC" = live root+rhizome biomass in standing crop cores (g/m2); "Dead SC" = dead root+rhizome biomass in standing crop cores (g/m2); "Total SC" = total live+dead biomass in standing crop cores (g/m2).
DOI: 10.5061/dryad.1pr7k/1
title: YNP 2012 Extensive Data Dryad

description: These data are for 2012 in an Excel spreadsheet containing three sheets of data and one of metadata.
DOI: 10.5061/dryad.3s40t/1
title: Ant, weed, soil data from wheat fields in Australia

description: The file is an Excel spreadsheet with three sheets.  The first sheet has ant and weed numbers.  The second sheet has soil nutrient data.  The third sheet has soil moisture data.
DOI: 10.5061/dryad.5hq56/2
title: Notes S2 - HeliaMet Database

description: HeliaMet database of normalized peak areas for individuals of all detected compounds via HPLC-MS, with m/z ratios and retention times.
DOI: 10.5061/dryad.60q44/1
title: Mortality data and associated variables

description: This is an Excel (.xlsx) file derived from an Access database of cumulative mortality data collected in the field from farm records in the UK, Sweden and the Netherlands. Associated data include housing system, flock size and genotype. See Notes sheet for description of abbreviations.
DOI: 10.5061/dryad.60q44/2
title: Data used in the LCA analysis by Cranfield University

description: The file describes the content, which includes tables of average growth and feed data for the breed B used in the models of the paper plus a table of average mortality data.
DOI: 10.5061/dryad.68fs0/1
title: SupplementaryTableS1_Buehlmann2016

description: Dry weight (g m-2), C concentration (mg C g-1 dry weight) and C pools (g m-2) of plant material and soil (0-30 cm, mean ± se) of pastures and Alnus shrubland at low and high elevation.
DOI: 10.5061/dryad.7g0hr/1
title: Siepielski et al data set

description: The data set contains information on the experimental lake, source lake, density treatment and initial and final masses of larval damselflies.
DOI: 10.5061/dryad.8dp00/1
title: Testing for a genetic response to sexual selection in a wild Drosophila population

description: Data from "Testing for a genetic response to sexual selection in a wild Drosophila population". Includes treatment, sire, dam and chi values for 8 traits
DOI: 10.5061/dryad.cj910/1
title: Dryad entry

description: Includes phenotypic data files and genomic variant calls, plus a Readme.txt file with explanations
DOI: 10.5061/dryad.cr0mb/14
title: Fastq Files for H.tuberculata, blastula stage

description: These are fastq files for H.tuberculata, blastula stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
DOI: 10.5061/dryad.cr0mb/15
title: Fastq Files for H.tuberculata, gastrula stage

description: These are fastq files for H.tuberculata, gastrula stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
DOI: 10.5061/dryad.cr0mb/16
title: Fastq Files for H.tuberculata, prism "early larva" stage

description: These are fastq files for H.tuberculata, prism "early larva" stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
DOI: 10.5061/dryad.cr0mb/17
title: Fastq Files for H.erythrogramma, egg stage

description: These are fastq files for H.erythrogramma, egg stage. There are three replicates, each is 50 bp PE
DOI: 10.5061/dryad.cr0mb/18
title: Fastq Files for H.erythrogramma, 4-cell stage

description: These are fastq files for H.erythrogramma, 4-cell stage. There are three replicates, each is 50 bp PE
DOI: 10.5061/dryad.cr0mb/19
title: Fastq Files for H.erythrogramma, 16-cell stage

description: These are fastq files for H.erythrogramma, 16-cell stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
DOI: 10.5061/dryad.cr0mb/20
title: Fastq Files for H.erythrogramma, 32-cell stage

description: These are fastq files for H.erythrogramma, 32-cell stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
DOI: 10.5061/dryad.cr0mb/21
title: Fastq Files for H.erythrogramma, blastula stage

description: These are fastq files for H.erythrogramma, blastula stage. There are three replicates, two are 50 bp PE and one is 50 bp SE
DOI: 10.5061/dryad.d3j00/10
title: Part 10 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"

description: All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts).All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work.All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts).All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts).The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
DOI: 10.5061/dryad.d3j00/11
title: Part 11 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"

description: All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts).All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work.All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts).All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts).The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
DOI: 10.5061/dryad.d3j00/8
title: Part 8 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"

description: All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts).All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work.All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts).All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts).The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
DOI: 10.5061/dryad.d3j00/9
title: Part 9 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"

description: All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts).All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work.All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts).All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts).The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
DOI: 10.5061/dryad.dc1q8.1
title: Data from: Population structure of two rabies hosts relative to the known distribution of rabies virus variants in Alaska
DOI: 10.5061/dryad.dc1q8.2/2.2
title: Goldsmith et al fox data

description: DNA sequence data and microsatellite genotypes for red and arctic foxes, a Newick tree file of rabies virus variants from Alaska, and two Arlequin project files for data analysis.
DOI: 10.5061/dryad.fh34h/1
title: kilner2015_exp1

description: Data for experiment 1: Parent quality was manipulated and assayed by providing broods of different sizes for which to care.
DOI: 10.5061/dryad.fh34h/2
title: kilner2015_exp2

description: Data for experiment two: Female quality was manipulated by removing parents at different times during development. They bred twice with the same male. Costs and benefits for both parents were measured.
DOI: 10.5061/dryad.fh34h/3
title: field_beetles

description: The comparison between body size distributions of experimental and wild-caught beetles.
DOI: 10.5061/dryad.j3n0g/1
title: Full sequence data and nexus files from comparative data set

description: Sequence data following demultiplexing and quality control steps. These sequences were used for collecting taxonomic information and generating OTUs within each sample site and across all sample sites. Aligned nexus files of the 31 OTUs in the comparative data set are also included.
DOI: 10.5061/dryad.jt008/1
title: Chromosome_counts_data

description: These are all the raw chromosome counts used for statistics in the article.
DOI: 10.5061/dryad.k5r31/1
title: raw data: plaque growth around obstacles of defined size and shape

description: see ReadMe file
DOI: 10.5061/dryad.k5r31/2
title: raw data: plaque growth in randomly structured heterogeneous environments

description: see ReadMe file
DOI: 10.5061/dryad.k5r31/3
title: raw data: spatial expansion of E. coli around regions with poor nutrient conditions

description: see ReadMe file
DOI: 10.5061/dryad.mb580/1
title: Californianus_19C

description: SANS and USANS scattering data after subtraction for Mytilus californianus plaques created at 19C water temperature.
DOI: 10.5061/dryad.mb580/2
title: californianus_38C

description: SANS and USANS scattering data after subtraction for Mytilus californianus plaques created at 3.8C water temperature (cold compared to normal temperature)
DOI: 10.5061/dryad.mb580/3
title: galloprovincialis_19C

description: SANS and USANS scattering data after subtraction for Mytilus galloprovincialis plaques created at 19C water temperature.
DOI: 10.5061/dryad.mb580/4
title: galloprovincialis_38C

description: SANS and USANS scattering data after subtraction for Mytilus galloprovincialis plaques created at 3.8C water temperature (cold compared to normal temperature)
DOI: 10.5061/dryad.mb580/5
title: californianus_19C_guanidine

description: SANS and USANS scattering data after subtraction for Mytilus californianus plaques created at 19C water temperature and subjected to guanidine hydrochloride treatment.
DOI: 10.5061/dryad.ns657/3
title: Gblocks alignment of STE3 pheromone receptors of M. roreri

description: This file contains the GBlocks alignment of all the STE3 receptors from M. roreri and related species to perform the phylogenetic analysis described in the paper.
DOI: 10.5061/dryad.qt4q2/1
title: Characters used in phylogenetic analysis
DOI: 10.5061/dryad.qt4q2/2
title: Data matrix for phylogenetic analysis

description: Mesquite format
DOI: 10.5061/dryad.r4342/1
title: Alignment of formin intron sequences from Euhadra species

description: Data relates to Figure S2d.
DOI: 10.5061/dryad.r4342/2
title: Alignment of formin intron sequences from Partula species

description: Data relates to Figure S2e
DOI: 10.5061/dryad.r4342/3
title: Alignment of FH2 domain sequences

description: Data relates to Figure S2a. Original alignment kindly provided by Dimitra Chalkia (see Chalkia et al 2008). New accessions were then added manually.
DOI: 10.5061/dryad.r4342/4
title: Alignment of gastropod FH2 domain sequences

description: Data relates to Figure S2b
DOI: 10.5061/dryad.r4342/5
title: Alignment of formin gene sequences from Lymnaea stagnalis

description: Contains sequences of Ldia1 and Ldia2, derived from dextral and sinistral haplotypes
DOI: 10.5061/dryad.r4342/6
title: Predicted gene sequences for candidate genes

description: Sequences for sinistral and dextral-derived haplotypes
DOI: 10.5061/dryad.r4342/7
title: Concatenated alignment of 28S and 18S sequences

description: Concatenated alignment of 28S (1-3712) and 18S sequences (3716-5448). Data relates to Figure S2c and Figure 1.
DOI: 10.5061/dryad.r4342/8
title: Table S1

description: Table S1 from the paper in Excel format
DOI: 10.5061/dryad.rc0jn/1
title: Database on cost and feasibility of marine coastal restoration

description: This database represents the core part of the synthesis review "The cost and feasibility of marine coastal restoration". It contains information on cost and feasibility of restoration projects worldwide. The database is divided into five sections according to each investigated ecosystem: coral reefs, seagrass, mangroves, saltmarshes, and oyster reefs. Each ecosystem-specific database section contains the full reference, general information about the publication and project, the restoration action undertaken, species involved, location, a description on the type of cost reported, information on funding sources, project duration (in years), the area restored in hectare (ha), the converted restoration cost in 2010 US$ ha-1, feasibility information (including reasons for success or failure), and restoration success in terms of % survival of restored organisms. For coral reefs, we also accounted for pre-transplant (i.e. survival of coral spat/larvae in culture before rearing them in nursery or out-planting), transplant (i.e. survival of coral fragments during nursery period), post-transplant (i.e. survival of coral fragments after out-planting to the reef) survival as well as for the overall survival averaged over the former three categories. See ‘Approach’ of the publication for a detailed database description and Table A1-A5 in Appendix A for a detailed summary of the database information.
DOI: 10.5061/dryad.sk7q8/1
title: Polystichopsis chaerophylloides

description: SEM spore photo of Polystichopsis chaerophylloides. Fig. 5A in published article, showing spore from Puerto Rico, Britton & Marble 1082, NY; scale bar = 10 micrometers.
DOI: 10.5061/dryad.sk7q8/2
title: Arachniodes ochropteroides

description: SEM spore photo of Arachniodes ochropteroides. Fig. 5B in published article. voucher: Suriname, T. Hawkins 1906 ( NY). Scale bar = 10 micrometers.
DOI: 10.5061/dryad.sk7q8/3
title: Olfersia alata

description: SEM spore photo of Olfersia alata. Fig. 5C in published article. voucher: Cuba, Wright 784 (NY). Scale bar = 10 micrometers.
DOI: 10.5061/dryad.sk7q8/4
title: Maxonia apiifolia

description: SEM spore photo of Maxonia apiifolia. Fig. 5D in published article. Voucher: Jamaica, Maxon 2822 (NY). Scale bar = 10 micrometers.
DOI: 10.5061/dryad.sk7q8/5
title: Cyclodium inerme

description: SEM photo of Cyclodium inerme. Fig. 5E in published article. Voucher: Guyana, Tillett et al. 44942 (NY). Scale bar = 10 micrometers.
DOI: 10.5061/dryad.sk7q8/6
title: Polybotrya aequatoriana

description: SEM spore photo of Polybotrya aequatoriana. Fig. 5F in published article. Voucher: Bolivia, S. Beck 3060 (NY). Scale bar = 10 micrometers.
DOI: 10.5061/dryad.tg735/1
title: Sound dictionary

description: Dictionary that maps words into sound categories. There are 6 main sound categories (motorized transport, nature, human, music, building, mechanical), all of them marked with a three digit numerical code starting with numbers from 1 to 6. Each sound category has sub-categories, that are identified by the last two digits of the code (e.g., Motorized transport -&gt; Road has code 101).
The category codes, along with the respective category names, are listed at the beginning of the file, in between '%' characters. 483 lines with word-soundcode mappings follow. The dictionary includes both English and Spanish words.
DOI: 10.5061/dryad.tg735/2
title: London Flickr picture IDs (CC)

description: List of 2,663,203 Flickr photo IDs. Pictures are all public, Creative Commons Flickr pictures taken within the geographical bounding box of Greater London. Picture metadata (including textual tags and geographic coordinates) can be retrieved via the public Flickr API, using the photo ID as key of the API call: https://www.flickr.com/services/api/
DOI: 10.5061/dryad.tg735/3
title: Barcelona Flickr picture IDs (CC)

description: List of 537,180 Flickr photo IDs. Pictures are all public, Creative Commons Flickr pictures taken within the geographical bounding box of Barcelona. Picture metadata (including textual tags and geographic coordinates) can be retrieved via the public Flickr API, using the photo ID as key of the API call: https://www.flickr.com/services/api/
DOI: 10.5061/dryad.tr2f1/1
title: MechanicalTestingData

description: Compressed file containing raw force data of the cyclic loading experiments.
DOI: 10.5061/dryad.tr2f1/2
title: TEM Images

description: Compressed file containing TEM images of en face and transverse section of dense disorganized collagen substrate after cyclic loading
DOI: 10.5061/dryad.0pf75/1
title: Eleginops maclovinus microsatellite dataset
DOI: 10.5061/dryad.159j5/1
title: 16S rRNA-Hap

description: Specimens were collected from the Ili River, Kaidu River, and Junggar Basin in Xinjiang，China. DNA sequences were edited using the program DNASTAR 5.0 (DNASTAR Inc.), and were aligned using CLUSTALW as implemented in MEGA 5.05
DOI: 10.5061/dryad.159j5/2
title: Cytb-Hap

description: Specimens were collected from the Ili River, Kaidu River, and Junggar Basin in Xinjiang，China. DNA sequences were edited using the program DNASTAR 5.0 (DNASTAR Inc.), and were aligned using CLUSTALW as implemented in MEGA 5.05
DOI: 10.5061/dryad.159j5/3
title: Rag2-Hap

description: Specimens were collected from Ili River,Kaidu River, and Junggar Basin in Xinjiang，China.DNA sequences were edited using the program DNASTAR 5.0 (DNASTAR Inc.), and were aligned using CLUSTALW as implemented in MEGA 5.05
DOI: 10.5061/dryad.1pr7k/2
title: YNP 1999 Extensive Data Dryad

description: These data are for 1999 (originally included in Turner et al. 2004, Ecosystems) and are in an Excel spreadsheet with three sheets of data and one with metadata.
DOI: 10.5061/dryad.20r4r/1
title: Salinity, scale density, and Spartina performance during field and mesocosm manipulations of scale insects and soil salinity

description: Each tab in the excel file contains data for a separate component from one of the three experiments. The 2011 and 2012 field experiments were conducted in Sweetwater Marsh. The 2011 mesocosm experiment was conducted at the San Diego State University Coastal Marine Institute and Laboratory.
DOI: 10.5061/dryad.2361d/1
title: Tringa semipalmata UCE alignments

description: UCE alignments for all Tringa semipalmata individuals included in our study, and separate UCE alignments for each subspecies.