cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5291/ill-data.uga-110
title: Test of high-resolution neutron screens and real-time centroiding detector
DOI: 10.5291/ill-data.uga-112
title: High temperature testing of Concrete
DOI: 10.5291/ill-data.uga-113
title: Evaluation of bone-implant interface in osteoporotic bone using neutron-based imaging
DOI: 10.5291/ill-data.uga-116
title: Mechanisms of cracking-induced layering associated with the propagation of a water front in an initially unsaturated clay
DOI: 10.5291/ill-data.uga-23
title: Flushthrough T
DOI: 10.5291/ill-data.uga-24
title: Scans of concrete at different drying stages
DOI: 10.5291/ill-data.uga-25
title: UGA tomography commissioning x-rays
DOI: 10.5291/ill-data.uga-26
title: Environmental drying of Concrete
DOI: 10.5291/ill-data.uga-30
title: Hydromechanical testing of Sandstones
DOI: 10.5291/ill-data.uga-31
title: Mechanical resistance of Bone implants
DOI: 10.5291/ill-data.uga-32
title: Drying of Concrete at high temperatures
DOI: 10.5291/ill-data.uga-35
title: Neutron and X-ray Imaging of fluid flow and deformation in limestones
DOI: 10.5291/ill-data.uga-36
title: Combined neutron and X-ray tomographic imaging study of bitumen emulsion-cement composites
DOI: 10.5291/ill-data.uga-37
title: Verifying the loading conditions of a novel, portable plane-strain device designed for neutron diffraction experiments by neutron tomography
DOI: 10.5291/ill-data.uga-46
title: Environmental drying of concrete
DOI: 10.5291/ill-data.uga-48
title: Environmental drying of concrete
DOI: 10.5291/ill-data.uga-51
title: Environmental drying of concrete
DOI: 10.5291/ill-data.uga-53
title: Rock permeability alteration by salt precipitation induced by gas injection
DOI: 10.5291/ill-data.uga-54
title: Reactive flow through carbonate rocks
DOI: 10.5291/ill-data.uga-55
title: Neutron tomography on bone implants
DOI: 10.5291/ill-data.uga-57
title: Neutron imaging for re-bar corrosion studies in concrete
DOI: 10.5291/ill-data.uga-59
title: Evolution of the pore structure of carbonates upon dissolution in controled acidic environment
DOI: 10.5291/ill-data.uga-60
title: Environment drying of concrete
DOI: 10.5291/ill-data.uga-64
title: NT and X-ray investigations on brick-mortar interface behaviour at high temperatures
DOI: 10.5291/ill-data.uga-65
title: Water degradation effect in brittle porous media
DOI: 10.5291/ill-data.uga-66
title: Double imaging using X rays and neutrons
DOI: 10.5291/ill-data.uga-67
title: From waste to resource: recycled tyre polymer fibres for fire spalling mitigation
DOI: 10.5291/ill-data.uga-69
title: Bimodal imaging studies of porous carbonate rocks
DOI: 10.5291/ill-data.uga-70
title: Monitoring of fast moisture migration in heated concrete
DOI: 10.5291/ill-data.uga-71
title: Analysis of moisture transport in unilaterally-heated dense high performance, concrete (PC) using neutron tomography, X-ray
DOI: 10.5291/ill-data.uga-75
title: Novel investigation of the water transport in porous cellulose fibre networks using neutron imaging
DOI: 10.5291/ill-data.uga-77
title: rock permeability alteration by salt precipitation induced by gas injection
DOI: 10.5291/ill-data.uga-78
title: Rebar
DOI: 10.5291/ill-data.uga-79
title: Presence of hydrogenous and clays compunds in Martian meteorites
DOI: 10.5291/ill-data.uga-84
title: Neutron tomography of implant-induced Gd accumulation in rat tibiae
DOI: 10.5291/ill-data.uga-86
title: 3D real time monitoring of biofilm's development in a biofilter using neutron tomography
DOI: 10.5291/ill-data.uga-88
title: Test of a fossil
DOI: 10.5291/ill-data.uga-89
title: Impactite formation studied by neutron tomography
DOI: 10.5291/ill-data.uga-95
title: BIOTOM
DOI: 10.15468/vz4y8w
title: Contributions to the study of the grasshopper (Orthoptera: Acrididae Gomphocerinae) courtship songs from Kazakhstan and adjacent territories

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vedenina, Varvara, Sevastianov, Nikita, Tarasova, Tatiana (2020): Contributions to the study of the grasshopper (Orthoptera: Acrididae Gomphocerinae) courtship songs from Kazakhstan and adjacent territories. Zootaxa 4895 (4): 505-527, DOI: https://doi.org/10.11646/zootaxa.4895.4.3
DOI: 10.23721/109/1504454
title: internet_outage_adaptive_a36e-20190401 (2019-04-01 to 2019-07-01)

description: To collect this data, all allocated and responsive Internet IP address blocks were pinged by sending ICMP ECHO_REQUEST (PING) packet. The block status was recorded in this data set. Probe was repeated every 11 minutes, and more quickly when uncertain about block status. In all, approximately 3.5M /24 subnets were periodically probed.
DOI: 10.23721/109/1517643
title: internet_address_census_it88c-20191127 (2019-11-27 to 2019-12-29)

description: To collect this data, an Internet-wide IP address sweep was conducted. Every IP address in the ranges allocated by IANA was pinged once by sending ICMP ECHO_REQUEST (PING) packet. If the response (ICMP_ECHO_REPLY) came, its IP address was recorded in this data-set. In all, over 2.5 billion distinct IP addresses were probed during this experiment.
DOI: 10.23721/109/1506026
title: internet_address_census_it87c-20190911 (2019-09-11 to 2019-10-13)

description: To collect this data, an Internet-wide IP address sweep was conducted. Every IP address in the ranges allocated by IANA was pinged once by sending ICMP ECHO_REQUEST (PING) packet. If the response (ICMP_ECHO_REPLY) came, its IP address was recorded in this data-set. In all, over 2.5 billion distinct IP addresses were probed during this experiment.
DOI: 10.15468/jwv4vu
title: A new species of Nemipterus (Pisces: Nemipteridae) from the Western Indian Ocean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Russell, Barry C., Gouws, Gavin (2020): A new species of Nemipterus (Pisces: Nemipteridae) from the Western Indian Ocean. Zootaxa 4895 (4): 573-580, DOI: https://doi.org/10.11646/zootaxa.4895.4.7
DOI: 10.21227/dk32-pf37
title: Figure Data Backup

description: Figure Data Backup for paper, "Co-Evolution of Malware Threats in the U.S. Commercial Sector and Defense Industrial Base"
DOI: 10.21227/j42p-h866
title: Figure Data Backup

description: Figure Data Backup for paper, "Co-Evolution of Malware Threats in the U.S. Commercial Sector and Defense Industrial Base"
DOI: 10.15468/64nsze
title: Type specimens of Caudofoveata (Mollusca, Aplacophora) in the molluscan collections of the National Museum of Natural History, Smithsonian Institution and of the Museum of Comparative Zoology, Harvard University

description: This dataset contains the digitized treatments in Plazi based on the original journal article Miranda, Marcel S., Strong, Ellen E., Passos, Flávio D. (2020): Type specimens of Caudofoveata (Mollusca, Aplacophora) in the molluscan collections of the National Museum of Natural History, Smithsonian Institution and of the Museum of Comparative Zoology, Harvard University. Zootaxa 4895 (4): 581-593, DOI: https://doi.org/10.11646/zootaxa.4895.4.8
DOI: 10.5281/zenodo.4386444
title: Relationships between cortisol and testosterone in female titi monkeys (Plecturocebus cupreus) [dataset]

description: [dataset for article in review] Steroid hormones are critical to the regulation of sociosexual behavior. Their role in the formation of pair bonds is complicated by the relative scarcity of this social system in mammals, as well as species and taxonomic differences in endocrine systems. In the present study, we experimentally manipulated the hypothalamic-pituitary-adrenal axis in female titi monkeys (<em>Plecturocebus cupreus</em>), a neotropical monkey studied for its strong, selective pair bonds. We validated a new assay for plasma and urinary cortisol in this species, showing a strong suppression of cortisol following dexamethasone injection, and a significant but somewhat blunted response to adrenocorticotrophin hormone (ACTH) stimulation. Urinary testosterone did not change in response to dexamethasone or ACTH. Plasma and urinary cortisol were highly correlated, whereas urinary cortisol and testosterone were only correlated when extreme cortisol values were included. In this study, we laid groundwork for studying the role of glucocorticoids and androgens (and eventually, their interactions with peptides) in the behavioral endocrinology of pair bonds in female titi monkeys.
DOI: 10.5281/zenodo.4386443
title: Relationships between cortisol and testosterone in female titi monkeys (Plecturocebus cupreus) [dataset]

description: [dataset for article in review] Steroid hormones are critical to the regulation of sociosexual behavior. Their role in the formation of pair bonds is complicated by the relative scarcity of this social system in mammals, as well as species and taxonomic differences in endocrine systems. In the present study, we experimentally manipulated the hypothalamic-pituitary-adrenal axis in female titi monkeys (<em>Plecturocebus cupreus</em>), a neotropical monkey studied for its strong, selective pair bonds. We validated a new assay for plasma and urinary cortisol in this species, showing a strong suppression of cortisol following dexamethasone injection, and a significant but somewhat blunted response to adrenocorticotrophin hormone (ACTH) stimulation. Urinary testosterone did not change in response to dexamethasone or ACTH. Plasma and urinary cortisol were highly correlated, whereas urinary cortisol and testosterone were only correlated when extreme cortisol values were included. In this study, we laid groundwork for studying the role of glucocorticoids and androgens (and eventually, their interactions with peptides) in the behavioral endocrinology of pair bonds in female titi monkeys.
DOI: 10.5066/p921c7i9
title: Rusty Patched Bumble Bee Pollen Metagenome

description: The rusty-patched bumble bee (Bombus affinis) is a listed species under the Endangered Species Act of the United States. While understood to be a highly generalist forager, little is known on the role that limited floral resources or shifting floral community composition could have played in B. affinis decline. Determining which floral species provide suitable B. affinis forage could assist conservation efforts where B. affinis persists, identify floral species for restoration efforts, or highlight regions to search for cryptic populations.
DOI: 10.15468/ytr7h6
title: Studies on raspy crickets: New Triaenogryllacris species (Orthoptera: Gryllacrididae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cadena-Castañeda, Oscar J., Díaz, Carlos Julio Arango, Guez, Nixon Oscar Parra Rodrí-, García, Alexander García (2020): Studies on raspy crickets: New Triaenogryllacris species (Orthoptera: Gryllacrididae). Zootaxa 4896 (2): 239-250, DOI: https://doi.org/10.11646/zootaxa.4896.2.5
DOI: 10.5281/zenodo.4386317
title: InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning

description: LTR retrotransposons are mobile elements that make up the major part of most plant genomes. Their identification and annotation via bioinformatics approaches represent a major challenge in the era of massive plant genome sequencing. In addition to their involvement in the variation in genome size, these elements are also associated in the function and structure of different chromosomal regions and in the alteration of the function of coding regions, among others. Several plant retrotransposon sequence databases of LTR retrotransposons are available with public access such as PGSB, RepetDB or restricted access such as Repbase. Although they are useful for approaches to identify LTR-RTs in new genomes by similarity, the elements of these databases are not classified down to the lineage/family level. with great depth. Here, we present InpactorDB a semi-curated dataset composed of 130,511 elements from 195 plant genomes (belonging to 108 plant species), classified down to the lineage level. This data set has been used to train two deep neural networks (one fully connected and one convolutional) for fast classification of elements. Used in lineage-level classification approaches, we obtain a score above 98% of F1-score, precision and recall. In order to classify elements of the ‘LTR_STRUC’ and ‘EDTA’ datasets, we used the methodology proposed by Inpactor, which uses homology-based strategy with known coding domains belonging to LTR-RTs. We utilized the RexDB domain library as reference. LTR-RTs were classified into superfamilies, Gypsy (RLG) or Copia (RLC) and sub-classified into lineages according to the similarities of five different amino acid reference domains (GAG, AP, RT, RNAseH, and INT domains). In addition, we applied filters to remove keep only intact elements: 1) to remove predicted elements with domains from two different superfamilies (i.e. Gypsy and Copia), 2) or elements with domains belonging to two or more different lineages, 3) to remove elements with lengths different than those reported by Gypsy Database (GyDB) with a tolerance of 20%, 4) to delete incomplete elements which has less than three identified domains, and 5) to remove elements with insertions of TE class II (reported in Repbase). The final non-redundant version of InpactorDB consists of 67,305 LTR retrotransposons. Both redundant and non-redundant versions of InpactorDB are available in Fasta format in which sequences have identifiers with the following general Identification code: &gt;Superfamily-Lineage-plant_family-specie-source-length-ID, Where Superfamily can is either RLC (for Copia) or RLG (for Gypsy), Lineage/family follows following the RexDB nomenclature, source (can be Repbase, RepetDB, PGSB, LTR_STRUC or EDTA datasets), length, and ID, is a unique number which identify each element inside the InpactorDB.
DOI: 10.5281/zenodo.4320974
title: Long read proteogenomics codeathon

description: Datasets for the CSHL LRP Codeathon team
DOI: 10.15468/yq5jnq
title: Two new species of Colombian Epigomphus (Odonata: Gomphidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bota-Sierra, Cornelio Andrés, Novelo-Gutiérrez, Rodolfo (2020): Two new species of Colombian Epigomphus (Odonata: Gomphidae). Zootaxa 4896 (2): 265-276, DOI: https://doi.org/10.11646/zootaxa.4896.2.7
DOI: 10.15468/9pzbvx
title: A new species of Bithoracochaeta Stein (Diptera: Muscidae) with comments on Mexican species of the genus and their implication as possible biocontrol agents for greenhouses pests

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jaume-Schinkel, Santiago, Ibáñez-Bernal, Sergio (2020): A new species of Bithoracochaeta Stein (Diptera: Muscidae) with comments on Mexican species of the genus and their implication as possible biocontrol agents for greenhouses pests. Zootaxa 4896 (2): 283-291, DOI: https://doi.org/10.11646/zootaxa.4896.2.9
DOI: 10.5291/ill-data.8-02-804
title: Neutron Reflectometry of clathrin-mediated endocytosis
DOI: 10.5281/zenodo.4386493
title: Long read proteogenomics codeathon

description: Datasets for the CSHL LRP Codeathon team
DOI: 10.18112/openneuro.ds003452.v1.0.0
title: DMCC13benchmark
DOI: 10.5291/ill-data.8-05-424
title: Towards a faithful description of biologically relevant dications
DOI: 10.5281/zenodo.4383363
title: Repository: The Distribution of Frosts on Mars: Links to Present-Day Gully Activity

description: This repository contains: 1. Global calculated CO2 frost point temperatures calculated at 1 ppd every 10 Ls using surface pressure from the online version of the Mars Climate Database<br> (http://www-mars.lmd.jussieu.fr/mcd_python/)<br> CO2 Frost Points <br> 2. Local Solar Time and Season of THEMIS CO2 Frost Detections at gully locations<br> corr_gully_detections_filenames_meta 3. Calculated CO2 frost amounts at 30S, 40S, 50S and 60S on pole-facing slopes<br> Frost Amounts 4. Calculated CO2 frost amounts varying with lower material thermal inertia, slope azimuth, top material thermal inertia, top material thickness and surface albedo<br> Frost Sensitivity 5. 'Normalized' gully maps from Harrison et al. (2015), Vincendon (2015) and Dundas et al. (2019)<br> Gully Data Shapefiles 6. Predicted H2O frost lifetimes<br> H2OFrost_Stability 7. Sites of equatorial mass-wasting<br> McEwen_EqGullies 8. Global THEMIS CO2 Frost Detections from Mars Year (MY) 26<br> MY26_THEMIS_CO2_Frost_Detections 9. THEMIS CO2 Frost Detections at gully locations (Harrison et al. 2015) from MYs 26 - 35<br> MY26_35_THEMIS_GULLY_CO2_Frost_Detections 10. H2O frost temperatures at the Opportunity rover site<br> Opportunity_H2OFrost 11. CO2 Frost detections made by Piqueux et al. (2016) using Mars Climate Sounder data<br> Piqueux et al (2016) MCS CO2 Frost Detections 12. TES-derived data from Smith (2002)<br> a) TES_Avg_H2O_Vapor_Map<br> b) TES_Avg_Night_T_Map<br> c) TES_Avg_Pressure_Map<br> d) TES_MY26_H2OFrost_Temp_Map<br> e) TES_MY26_H2OFrost_Temp_Seasonal 13. The seasonal variation of the CO2 frost point at the Viking Lander sites<br> Viking_Lander_Data Dundas, Colin M., et al. "The formation of gullies on Mars today." <em>Geological Society, London, Special Publications</em> 467.1 (2019): 67-94. Harrison, Tanya N., et al. "Global documentation of gullies with the Mars Reconnaissance Orbiter Context Camera and implications for their formation." <em>Icarus</em> 252 (2015): 236-254. Vincendon, Mathieu. "Identification of Mars gully activity types associated with ice composition." <em>Journal of Geophysical Research: Planets</em> 120.11 (2015): 1859-1879. Smith, Michael D. "The annual cycle of water vapor on Mars as observed by the Thermal Emission Spectrometer." <em>Journal of Geophysical Research: Planets</em> 107.E11 (2002): 25-1.
DOI: 10.5281/zenodo.4386516
title: Long read proteogenomics codeathon

description: Datasets for the CSHL LRP Codeathon team
DOI: 10.21227/98z5-1w13
title: Three-dimensional Object Tracking in Panoramic Video and LiDAR for Radiological Source-Object Attribution and Improved Source Detection

description: Networked detector systems can be deployed in urban environments to aid in the detection and localization of radiological and/or nuclear material. However, effectively responding to and interpreting a radiological alarm using spec- troscopic data alone may be hampered by a lack of situational awareness, particularly in complex environments. This study investigates the use of LiDAR and streaming video to enable real-time object detection and tracking, and the fusion of this tracking information with radiological data for the purposes of enhanced situational awareness and increased detection sensitiv- ity. This work presents an object detection, tracking, and novel source-object attribution analysis that is capable of operating in real-time. By implementing this analysis pipeline on a custom developed system that comprises a static 2 × 4 × 16 inch NaI(Tl) detector co-located with a 64-beam LiDAR and 4 monocular cameras, we demonstrate the ability to accurately correlate trajectories from tracked objects to spectroscopic gamma-ray data in real time, and use physics-based models to reliably discriminate between source-carrying and non-source-carrying objects. In this work, we describe our approach in detail and present a quantitative performance assessment that characterizes the source-object attribution capabilities of both video and Li- DAR. Additionally, we demonstrate the ability to simultaneously track pedestrians and vehicles in a mock urban environment, and use this tracking information to improve both detection sensitivity and situational awareness using our contextual-radiological data fusion methodology.
DOI: 10.21227/bxys-qf03
title: Three-dimensional Object Tracking in Panoramic Video and LiDAR for Radiological Source-Object Attribution and Improved Source Detection

description: Networked detector systems can be deployed in urban environments to aid in the detection and localization of radiological and/or nuclear material. However, effectively responding to and interpreting a radiological alarm using spec- troscopic data alone may be hampered by a lack of situational awareness, particularly in complex environments. This study investigates the use of LiDAR and streaming video to enable real-time object detection and tracking, and the fusion of this tracking information with radiological data for the purposes of enhanced situational awareness and increased detection sensitiv- ity. This work presents an object detection, tracking, and novel source-object attribution analysis that is capable of operating in real-time. By implementing this analysis pipeline on a custom developed system that comprises a static 2 × 4 × 16 inch NaI(Tl) detector co-located with a 64-beam LiDAR and 4 monocular cameras, we demonstrate the ability to accurately correlate trajectories from tracked objects to spectroscopic gamma-ray data in real time, and use physics-based models to reliably discriminate between source-carrying and non-source-carrying objects. In this work, we describe our approach in detail and present a quantitative performance assessment that characterizes the source-object attribution capabilities of both video and Li- DAR. Additionally, we demonstrate the ability to simultaneously track pedestrians and vehicles in a mock urban environment, and use this tracking information to improve both detection sensitivity and situational awareness using our contextual-radiological data fusion methodology.
DOI: 10.48370/ofd/ntxivr
title: Skrzyp zimowy (Equisetum hyemale L.), 9066

description: Herbarium
DOI: 10.21227/62jf-m891
title: Three-dimensional Object Tracking in Panoramic Video and LiDAR for Radiological Source-Object Attribution and Improved Source Detection

description: Networked detector systems can be deployed in urban environments to aid in the detection and localization of radiological and/or nuclear material. However, effectively responding to and interpreting a radiological alarm using spec- troscopic data alone may be hampered by a lack of situational awareness, particularly in complex environments. This study investigates the use of LiDAR and streaming video to enable real-time object detection and tracking, and the fusion of this tracking information with radiological data for the purposes of enhanced situational awareness and increased detection sensitiv- ity. This work presents an object detection, tracking, and novel source-object attribution analysis that is capable of operating in real-time. By implementing this analysis pipeline on a custom developed system that comprises a static 2 × 4 × 16 inch NaI(Tl) detector co-located with a 64-beam LiDAR and 4 monocular cameras, we demonstrate the ability to accurately correlate trajectories from tracked objects to spectroscopic gamma-ray data in real time, and use physics-based models to reliably discriminate between source-carrying and non-source-carrying objects. In this work, we describe our approach in detail and present a quantitative performance assessment that characterizes the source-object attribution capabilities of both video and Li- DAR. Additionally, we demonstrate the ability to simultaneously track pedestrians and vehicles in a mock urban environment, and use this tracking information to improve both detection sensitivity and situational awareness using our contextual-radiological data fusion methodology.
DOI: 10.48370/ofd/zfuavw
title: Skrzyp zimowy (Equisetum hyemale L.), 9066

description: Herbarium
DOI: 10.17632/cy9nrg7j26.1
title: Data for: Effects of stochastic growth on population dynamics and management quantities estimated from an integrated catch-at-length assessment model: Panopea globosa as case study.

description: Catch-at-length data (shell length, catch during 2010) of geoduck clam Panopea globosa, including four stochastic growth matrices and growth parameters. All available from Excel.
DOI: 10.48370/ofd/op8fjw
title: Skrzyp zimowy (Equisetum hyemale L.), 9066

description: Herbarium
DOI: 10.7298/9qym-kw90
title: Cuticular and Glandular Chemistry of Megalopta genalis