cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jtf3cj
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Casuarina equisetifolia",
 "Country is Panama",
 "HasCoordinate is true"
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078154-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwh6n5
title: Occurrence Download

description: A dataset containing 73448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amadina erythrocephala)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 73448 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078123-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nvmfh
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Accipiter rufiventris",
 "Country is Lesotho",
 "HasCoordinate is true"
 ]
}

 The dataset includes 85 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078153-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mycazd
title: Occurrence Download

description: A dataset containing 34811 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Geranium sylvaticum",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 34811 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000721-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5w8z3
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-99.09323 19.34224,-99.08686 19.34224,-99.08686 19.34706,-99.09323 19.34706,-99.09323 19.34224))",
 "TaxonKey is Quercus rugosa"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000726-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3pyvq
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Antilophia bokermanni"
 ]
}

 The dataset includes 71 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000727-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8s54jt
title: Occurrence Download

description: A dataset containing 22488 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phaetusa simplex",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2026",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22488 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000725-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dwxzwj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Clupeoides hypselosoma"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000728-260225131425191/datasets/export for details.
DOI: 10.15468/dl.uud7jy
title: Occurrence Download

description: A dataset containing 25987 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Lysimachia europaea",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 25987 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000729-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efcc78
title: Occurrence Download

description: A dataset containing 295 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum flahaultii"
 ]
}

 The dataset includes 295 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000732-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18776378
title: hypsolebias_carlettoi_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.18776377
title: hypsolebias_carlettoi_decontaminated_FSCR.fasta.gz
DOI: 10.15468/dl.8aapqv
title: Occurrence Download

description: A dataset containing 676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calligrapha serpentina"
 ]
}

 The dataset includes 676 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000731-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnynv9
title: Occurrence Download

description: A dataset containing 1545 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thalurania watertonii"
 ]
}

 The dataset includes 1545 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000734-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vev2nd
title: Occurrence Download

description: A dataset containing 817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pontoporia blainvillei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 817 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000733-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5en2ms
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Clupeoides papuensis"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000737-260225131425191/datasets/export for details.
DOI: 10.15468/dl.wbzd69
title: Occurrence Download

description: A dataset containing 9514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pseudorca crassidens)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9514 records from 279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000735-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.87tgmv
title: Occurrence Download

description: A dataset containing 14009 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Poa alpina",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 14009 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000738-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ky2sa7
title: Occurrence Download

description: A dataset containing 34116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "OccurrenceStatus is Present",
 "TaxonKey is Latrodectus"
 ]
}

 The dataset includes 34116 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000740-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48472/deposita/hwlixu
title: Referências citadas pelas Teses e Dissertações defendidas no IFCH/UFRGS entre 2018 e 2023

description: Este conjunto de dados é composto
1 pela tabulação das teses e dissertações, sem embargo, defendidas nos PPGs acadêmicos do IFCH/UFRGS entre 2018 e 2023;
2 pela tabulação de 808 referências citadas transcritas no estudo piloto para cálculo amostral
3 pelo tabulação das referências citadas nas TDs sorteadas após cálculo amostral
4 pelos relatórios redigidos pelo Núcleo de Assessoria em Estatística da UFRGS ao longo da pesquisa (desde a definição do método de amostragem - Relatório 1, até os testes de hipótese - Relatório 3)
DOI: 10.60521/332734
title: Dive Reports generated during R/V Falkor (too) expedition FKt250922 (2025)

description: This data set was acquired with a Sealog Event Logger on ROV SuBastian during R/V Falkor (too) expedition FKt250922 conducted in 2025 (Chief Scientist: Dr. Silvia Romero). These data files are of PDF format and include Dive Reports.
DOI: 10.60521/332736
title: Raw Navigation Data acquired during R/V Falkor (too) expedition FKt250922 (2025)

description: This data set was acquired with a Navigation System on ROV SuBastian during R/V Falkor (too) expedition FKt250922 conducted in 2025 (Chief Scientist: Dr. Silvia Romero). These data files are of Text File (ASCII) format and include Navigation data that have not been processed.
DOI: 10.60521/332738
title: Near-Bottom ROV CTD, Oxygen and Temperature Data acquired during R/V Falkor (too) expedition FKt250922 (2025)

description: This data set was acquired with a Navigation System,Sea-Bird Electronics SBE-49 FastCAT CTD,Aanderaa Data Instruments 3841 Oxygen Optode Sensor and Sunburst Sensors AFT-pH pH Sensor on ROV SuBastian during R/V Falkor (too) expedition FKt250922 conducted in 2025 (Chief Scientist: Dr. Silvia Romero). These data files are of Text File (ASCII) format and include Conductivity, Fluid pH, Navigation, Oxygen and Temperature data that have not been processed.
DOI: 10.60521/332740
title: Dive Documentation acquired during R/V Falkor (too) expedition FKt250922 (2025)

description: This data set was acquired with a Sealog Event Logger on ROV SuBastian during R/V Falkor (too) expedition FKt250922 conducted in 2025 (Chief Scientist: Dr. Silvia Romero). These data files are of Text File (ASCII) format and include Event Logs.
DOI: 10.15468/dl.ef5467
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Clupeoides venulosus"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000741-260225131425191/datasets/export for details.
DOI: 10.5281/zenodo.18664966
title: Distributed Quantum Computing with Adaptive Circuit Knitting

description: Dataset for producing the figues of our manuscript "Distributed Quantum Computing with Adaptive Circuit Knitting"
DOI: 10.5281/zenodo.18664965
title: Distributed Quantum Computing with Adaptive Circuit Knitting

description: Dataset for producing the figues of our manuscript "Distributed Quantum Computing with Adaptive Circuit Knitting"
DOI: 10.5281/zenodo.15004690
title: MechanoAge, a machine learning platform to identify individuals susceptible to breast cancer based on mechanical properties of single cells CyTOF data

description: Data aquired using Helios mass cytometer (Standard BioTools) with the Super Sampler (Victorian Airship & Scientific Apparatus LLC, Alamo, CA, USA).
DOI: 10.5281/zenodo.15004689
title: MechanoAge, a machine learning platform to identify individuals susceptible to breast cancer based on mechanical properties of single cells CyTOF data

description: Data aquired using Helios mass cytometer (Standard BioTools) with the Super Sampler (Victorian Airship & Scientific Apparatus LLC, Alamo, CA, USA).
DOI: 10.15468/dl.drvrq9
title: Occurrence Download

description: A dataset containing 2320 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Odocoileus virginianus"
 ]
 },
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2024",
 "DecimalLatitude is greater than or equal to 44.16272",
 "DecimalLatitude is less than or equal to 45.47855",
 "DecimalLongitude is greater than or equal to -76.64343",
 "DecimalLongitude is less than or equal to -74.19794",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2320 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000742-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fwsrtu
title: Occurrence Download

description: A dataset containing 5226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Geometry POLYGON((-124.89517 25.42151,-68.06806 25.42151,-68.06806 48.8368,-124.89517 48.8368,-124.89517 25.42151))",
 "TaxonKey is Bromus tectorum"
 ]
}

 The dataset includes 5226 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000744-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18775966
title: Data for 'The Cytochrome b m.14849T>C (S35P) Variant Induces Structural and Dynamic Alterations in the Heme bL Microenvironment in Multisystem Diseases'

description: This dataset contains molecular dynamics simulation trajectories and associated structural analysis data generated to investigate the structural and energetic consequences of the MT-CYB m.14849T>C (p.Ser35Pro) variant in the Cytochrome b subunit of human mitochondrial Complex III.

All-atom molecular dynamics simulations were performed for both the wild-type (WT) and S35P mutant systems to assess mutation-associated alterations in the heme bL microenvironment and inter-heme geometry. The uploaded files include simulation trajectories, topology files, equilibrated structures, and representative molecular dynamics movies illustrating local conformational dynamics in the heme bL–proximal region.

In addition, the dataset contains analysis outputs used in the manuscript, including RMSD, RMSF, radius of gyration (Rg), solvent accessible surface area (SASA), hydrogen bond occupancy, radial distribution function (RDF), principal component analysis (PCA), free energy landscape (FEL), Molecular Mechanics Poisson-Boltzmann Surface Area (MM-PBSA) and inter-heme Fe(bL)–Fe(bH) distance measurements.

These data support the findings reported in the associated manuscript investigating the structural and dynamic effects of the MT-CYB p.Ser35Pro variant on the organization of the heme bL binding environment in mitochondrial Complex III.

All simulation trajectories and analysis outputs are provided to ensure reproducibility and enable further structural and dynamical investigations.
DOI: 10.5281/zenodo.18775965
title: Data for 'The Cytochrome b m.14849T>C (S35P) Variant Induces Structural and Dynamic Alterations in the Heme bL Microenvironment in Multisystem Diseases'

description: This dataset contains molecular dynamics simulation trajectories and associated structural analysis data generated to investigate the structural and energetic consequences of the MT-CYB m.14849T>C (p.Ser35Pro) variant in the Cytochrome b subunit of human mitochondrial Complex III.

All-atom molecular dynamics simulations were performed for both the wild-type (WT) and S35P mutant systems to assess mutation-associated alterations in the heme bL microenvironment and inter-heme geometry. The uploaded files include simulation trajectories, topology files, equilibrated structures, and representative molecular dynamics movies illustrating local conformational dynamics in the heme bL–proximal region.

In addition, the dataset contains analysis outputs used in the manuscript, including RMSD, RMSF, radius of gyration (Rg), solvent accessible surface area (SASA), hydrogen bond occupancy, radial distribution function (RDF), principal component analysis (PCA), free energy landscape (FEL), Molecular Mechanics Poisson-Boltzmann Surface Area (MM-PBSA) and inter-heme Fe(bL)–Fe(bH) distance measurements.

These data support the findings reported in the associated manuscript investigating the structural and dynamic effects of the MT-CYB p.Ser35Pro variant on the organization of the heme bL binding environment in mitochondrial Complex III.

All simulation trajectories and analysis outputs are provided to ensure reproducibility and enable further structural and dynamical investigations.
DOI: 10.4211/hs.abdb4e52147e408f9e328a5ba2a155f8
title: TempEst-NEXT: Source Code, Automatic Validation Suite, and Test Data

description: This resource contains data and code related to the development of the TempEst-NEXT river temperature forecasting model. The provided data and automatic validation suite should be sufficient to fully reproduce the performance analysis contained in the associated manuscript. The code includes model implementations for TempEst-NEWT (watershed-specific model) and TempEst-NEXT (ungaged model) as well as some utility functions for data retrieval and analysis. Data files include the development dataset (DevData) and independent test dataset (TestData) with both estimated weather (...Buffers.csv) and forecasted weather (...HRRR3.csv) as weather inputs. The NEXT_validation notebook automatically analyzes NEXT performance (with some random variation, so results may not be identical to the published values but should be close).

NEXT_validation_20250917.pdf is a knitted version of the validation notebook, containing all key results, as of September 17, 2025 (model version used for manuscript submission).

To run the entire Notebook, requirements are:
• Python dependencies: tempest-next, matplotlib, seaborn, and scikit-learn. tempest-next is available (under that name) on the Python Package Index, so pip install tempest-next. This will also install, as a dependency, TempEst-NEWT, the calibrated version of the model.
• A directory (specify location in bp= in the first cell) containing DevDataBuffers.csv, TestDataBuffers.csv, DevDataHRRR3.csv, and TestDataHRRR3.csv. These should be provided with the notebook. It should also contain a results subdirectory.
• In the same directory as the notebook:
  – An ecoregions directory, containing NA_CEC_Eco_Level1.shp (EPA Level I Ecoregions).
  – A usa_states directory, containing usa_states/cb_2018_us_state_20m.shp (US Census state outlines shapefile).
  – A val_figures directory
  – A results directory (in the directory `bp`, which can be the same directory)

The above requirements, other than the Python dependencies, are included in this data release, so, with `bp=(current directory)`, it should be possible to run everything from this download.

These data and related items of information have not been formally disseminated by NOAA, and do not represent any agency determination, view, or policy.
DOI: 10.15468/dl.5c3f9c
title: Occurrence Download

description: A dataset containing 2492 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Palaeobotanical Collections (PB), Swedish Museum of Natural History (NRM)",
 "Country is one of (Argentina, Bolivia (Plurinational State of), Brazil, Colombia, French Guiana, Guyana, Paraguay, Peru, Suriname, Uruguay, Venezuela (Bolivarian Republic of), Ecuador, Chile)"
 ]
}

 The dataset includes 2492 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000746-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2g96by
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Corica laciniata"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000745-260225131425191/datasets/export for details.