cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nfbauh
title: Occurrence Download

description: A dataset containing 459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carangoides equula (Temminck & Schlegel, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 459 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001849-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnabck
title: Occurrence Download

description: A dataset containing 286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zenopsis nebulosa (Temminck & Schlegel, 1845)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 286 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001850-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/2631
title: test
DOI: 10.5281/zenodo.12567415
title: A synthetic   dataset   for the exploration of survival and classification models: prediction of heart attack or stroke within a 10-year follow-up period

description: Machine learning methodologies are increasingly popular in health care research. This shift to integrated data science approaches necessitates professional development of the existing health care data analyst workforce. To enhance a smooth transition, educational resources need to be developed. Barriers to accessing real healthcare datasets, vital for health care data analyses methodologies training purposes, include financial, ethical and patient confidentiality concerns. Synthetic datasets mimicking real-world complexities offer a simpler solution.

We present a synthetic dataset which mirrors routinely collected primary care data on heart attack and stroke among the adult population. The data incorporates much of the practical challenges encountered in routinely collected primary care systems such as missing data, informative censoring, interactions, variable irrelevance, and noise and can be used for training in methods which handle these difficulties. The intent is for the user to build models of heart/stroke risk using survival-based methodologies.

By sharing this synthetic dataset openly, our goal is to contribute a transformative asset for professional training in health and social care data analysis. The dataset covers demographics, lifestyle variables, comorbidities, systolic blood pressure, hypertension treatment, family history of cardiovascular diseases, respiratory functioning, and experience of heart-attack and/or stroke. This initiative aims to bridge the gap in sophisticated healthcare datasets for training, fostering professional development of the health and social care research workforce.

This study is funded by the National Institute for Health and Care Research ARC Wessex and the National Centre for Research Methods. The views expressed in this summary are those of the author(s) and not necessarily those of the National Institute for Health and Care Research or the Department of Health and Social Care.
DOI: 10.5281/zenodo.12567416
title: A synthetic   dataset   for the exploration of survival and classification models: prediction of heart attack or stroke within a 10-year follow-up period

description: Machine learning methodologies are increasingly popular in health care research. This shift to integrated data science approaches necessitates professional development of the existing health care data analyst workforce. To enhance a smooth transition, educational resources need to be developed. Barriers to accessing real healthcare datasets, vital for health care data analyses methodologies training purposes, include financial, ethical and patient confidentiality concerns. Synthetic datasets mimicking real-world complexities offer a simpler solution.

We present a synthetic dataset which mirrors routinely collected primary care data on heart attack and stroke among the adult population. The data incorporates much of the practical challenges encountered in routinely collected primary care systems such as missing data, informative censoring, interactions, variable irrelevance, and noise and can be used for training in methods which handle these difficulties. The intent is for the user to build models of heart/stroke risk using survival-based methodologies.

By sharing this synthetic dataset openly, our goal is to contribute a transformative asset for professional training in health and social care data analysis. The dataset covers demographics, lifestyle variables, comorbidities, systolic blood pressure, hypertension treatment, family history of cardiovascular diseases, respiratory functioning, and experience of heart-attack and/or stroke. This initiative aims to bridge the gap in sophisticated healthcare datasets for training, fostering professional development of the health and social care research workforce.

This study is funded by the National Institute for Health and Care Research ARC Wessex and the National Centre for Research Methods. The views expressed in this summary are those of the author(s) and not necessarily those of the National Institute for Health and Care Research or the Department of Health and Social Care.
DOI: 10.5281/zenodo.8063475
title: Extended catalogue of infant and adult gut phageome shows high prevalence of lysogeny

description: Leveraging metagenomes from the Finnish HELMi birth cohort, a large collection of 6,186 MAGs from infant and adult gut microbiota was obtained and screened for integrated prophages, allowing the identification of 7,165  proviral sequences longer than 10kb. Strikingly, more than 70% of the near-complete MAGs were identified as lysogens. The prevalence of prophages in MAGs varied across bacterial families, with a lower prevalence observed in Coriobacteriaceae, Eggerthellaceae, Veillonellaceae and Burkholderiaceae, while a very high prevalence of lysogen MAGs was observed for Oscillospiraceae, Enterococcaceae, Enterobacteriaceae. Interestingly for several bacterial families such as Bifidobacteriaceae and Bacteroidaceae, the prevalence of proviruses in MAGs was higher in early infant time point (3 weeks and 3 months) than in later sampling points (6 and 12 months) and in adults. The proviral sequences were clustered into 5,616 species-like vOTUs, 77% of which were novel.


This repository contains the fasta files for the MAGs collection and the proviral sequences retrieved in this study.
DOI: 10.5281/zenodo.8063476
title: Extended catalogue of infant and adult gut phageome shows high prevalence of lysogeny

description: Leveraging metagenomes from the Finnish HELMi birth cohort, a large collection of 6,186 MAGs from infant and adult gut microbiota was obtained and screened for integrated prophages, allowing the identification of 7,165  proviral sequences longer than 10kb. Strikingly, more than 70% of the near-complete MAGs were identified as lysogens. The prevalence of prophages in MAGs varied across bacterial families, with a lower prevalence observed in Coriobacteriaceae, Eggerthellaceae, Veillonellaceae and Burkholderiaceae, while a very high prevalence of lysogen MAGs was observed for Oscillospiraceae, Enterococcaceae, Enterobacteriaceae. Interestingly for several bacterial families such as Bifidobacteriaceae and Bacteroidaceae, the prevalence of proviruses in MAGs was higher in early infant time point (3 weeks and 3 months) than in later sampling points (6 and 12 months) and in adults. The proviral sequences were clustered into 5,616 species-like vOTUs, 77% of which were novel.


This repository contains the fasta files for the MAGs collection and the proviral sequences retrieved in this study.
DOI: 10.15468/dl.p6z9yu
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lactifluus foetens (Verbeken & Van Rooij) Verbeken"
 ]
}

 The dataset includes 14 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001851-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10903716
title: Rapid evolutionary tuning of endospore quantity vs. quality trade-off via a phase variable contingency locus

description: Sequencing data and downstream bioinformatics analysis
DOI: 10.5281/zenodo.10903715
title: Rapid evolutionary tuning of endospore quantity vs. quality trade-off via a phase variable contingency locus

description: Sequencing data and downstream bioinformatics analysis
DOI: 10.15468/dl.kz5ksn
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinnotheres pholadis De Haan, 1835",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001852-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24313963
title: Melon database (GTDB)

description: GTDB R214 with 85,205 species and 402,690 genomes.
DOI: 10.6084/m9.figshare.24313963.v1
title: GTDB database

description: -----
DOI: 10.6084/m9.figshare.24313963.v2
title: Melon database (GTDB)

description: GTDB R214 with 85,205 species and 402,690 genomes.
DOI: 10.5281/zenodo.10991279
title: Data on the occurrence of Anisakids in fishery products from aquaculture in European countries (Jan 2010 – Sept 2023)

description: This file contains data on Anisakids in fishery products from aquaculture in European countries covering studies published between January 2010 and September 2023. The systematic review protocol used to identify and extract the information is available at https://zenodo.org/records/10270810.
description: EU; en; xlsx; Pauline.KOOH@anses.fr; ubarron@ipb.pt
DOI: 10.5281/zenodo.10790872
title: Data on the occurrence of Anisakids in fishery products from aquaculture in European countries (Jan 2010 – Sept 2023)

description: This file contains data on Anisakids in fishery products from aquaculture in European countries covering studies published between January 2010 and September 2023. The systematic review protocol used to identify and extract the information is available at https://zenodo.org/records/10270810.
description: EU; en; xlsx; Pauline.KOOH@anses.fr; ubarron@ipb.pt
DOI: 10.5281/zenodo.10790873
title: Data on the occurrence of Anisakids in fishery products from aquaculture in European countries (Jan 2010 – Sept 2023)

description: This file contains data on Anisakids in fishery products from aquaculture in European countries covering studies published between January 2010 and September 2023. The systematic review protocol used to identify and extract the information is available at https://zenodo.org/records/10270810.
description: EU; en; spreadsheet; Pauline.KOOH@anses.fr; ubarron@ipb.pt
DOI: 10.6084/m9.figshare.26114503
title: Raw data

description: Background: Matrix metalloproteinases (MMPs) play an important role in the pathophysiology of atherosclerosis. Reportedly, statins can decrease MMP activity in patients with atherosclerotic cardiovascular disease, but this effect has not been studied in healthy individuals. Methods: MMPs 2, 7, and 9 and several other parameters were measured before and after a four-week course of moderate-dose atorvastatin (20mg/day) in 21 healthy individuals. Results: Atorvastatin treatment resulted in lower total cholesterol, LDL-cholesterol, non-HDL-cholesterol, and triglycerides (p&lt;0.001 for all), but higher levels of plasma enzymes AST, ALT, CK, and LDH (p&lt;0.05 for all). No effect of atorvastatin on plasma MMPs median concentrations was recorded. Before treatment, moderate positive significant correlations were found between MMP-7 and age, blood lipids, and blood count-derived inflammatory markers. Pre-treatment MMP-7 was best predicted by the total cholesterol-to-HDL cholesterol ratio in a remnant cholesterol-weighted least squares regression model. After atorvastatin treatment, MMP-7 no longer correlated with these markers. Conclusions: While the effect of statins on plasma MMPs in atherosclerosis is controversial, short-term moderate-dose atorvastatin treatment does not seem to affect levels of MMPs 2, 7, and 9 in healthy individuals. However, an intriguing correlation between MMP-7 and atherosclerosis-related lipid and inflammatory biomarkers seems to be disrupted by atorvastatin, possibly via pleiotropic effects.
DOI: 10.15468/dl.mtvtk2
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Carpinus cordata Blume",
 "Year 2010-2024"
 ]
}

 The dataset includes 35 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001853-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24313966
title: Melon database (NCBI)

description: RefSeq R223 with 50,120 species and 351,713 genomes.
DOI: 10.6084/m9.figshare.24313966.v1
title: NCBI database

description: -----
DOI: 10.6084/m9.figshare.24313966.v2
title: Melon database (NCBI)

description: RefSeq R223 with 50,120 species and 351,713 genomes.
DOI: 10.15468/dl.qhkq9a
title: Occurrence Download

description: A dataset containing 5473 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Oxalis acetosella L."
 ]
}

 The dataset includes 5473 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001854-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4zznf
title: Occurrence Download

description: A dataset containing 906 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sebastiscus marmoratus (Cuvier, 1829)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 906 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001855-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zfpcyn
title: Occurrence Download

description: A dataset containing 512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Portunus trituberculatus (Miers, 1876)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 512 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001856-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9rw8r
title: Occurrence Download

description: A dataset listing the 2317 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Tuvalu",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 2317 records were derived from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001840-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.er5szz
title: Occurrence Download

description: A dataset containing 9944 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Sphagnum L., Oxalis acetosella L.)"
 ]
}

 The dataset includes 9944 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001857-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s87f3y
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Peponocephala electra (Gray, 1846)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001858-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12566458
title: Changes in productivity partitioning induced by precipitation extremes increase inaccuracy of grassland carbon estimation

description: The fraction of net primary productivity (NPP) allocated to belowground organs (fBNPP) in grasslands is a critical parameter in global carbon cycle models; moreover, understanding the effect of precipitation changes on this parameter is vital to accurately estimating carbon sequestration in grassland ecosystems. Here, by conducting both a precipitation gradient experiment (100–500 mm) and a long-term observational study (34 years) in the Inner Mongolia grassland, we showed that fBNPP decreased linearly along the precipitation gradient from extreme drought to extreme wetness due to stronger responses in aboveground NPP (ANPP) to drought and wet conditions than those of BNPP. The linearly decreasing response pattern in fBNPP should be incorporated into models that forecast carbon sequestration in grassland ecosystems; failure to do so will lead to underestimation of the carbon stock in drought years and overestimation of the carbon stock in wet years in grasslands.
DOI: 10.5281/zenodo.11480258
title: Changes in productivity partitioning induced by precipitation extremes increase inaccuracy of grassland carbon estimation

description: The fraction of net primary productivity (NPP) allocated to belowground organs (fBNPP) in grasslands is a critical parameter in global carbon cycle models; moreover, understanding the effect of precipitation changes on this parameter is vital to accurately estimating carbon sequestration in grassland ecosystems. Here, by conducting both a precipitation gradient experiment (100–500 mm) and a long-term observational study (34 years) in the Inner Mongolia grassland, we showed that fBNPP decreased linearly along the precipitation gradient from extreme drought to extreme wetness due to stronger responses in aboveground NPP (ANPP) to drought and wet conditions than those of BNPP. The linearly decreasing response pattern in fBNPP should be incorporated into models that forecast carbon sequestration in grassland ecosystems; failure to do so will lead to underestimation of the carbon stock in drought years and overestimation of the carbon stock in wet years in grasslands.
DOI: 10.5281/zenodo.12567950
title: Changes in productivity partitioning induced by precipitation extremes increase inaccuracy of grassland carbon estimation

description: The fraction of net primary productivity (NPP) allocated to belowground organs (fBNPP) in grasslands is a critical parameter in global carbon cycle models; moreover, understanding the effect of precipitation changes on this parameter is vital to accurately estimating carbon sequestration in grassland ecosystems. Here, by conducting both a precipitation gradient experiment (100–500 mm) and a long-term observational study (34 years) in the Inner Mongolia grassland, we showed that fBNPP decreased linearly along the precipitation gradient from extreme drought to extreme wetness due to stronger responses in aboveground NPP (ANPP) to drought and wet conditions than those of BNPP. The linearly decreasing response pattern in fBNPP should be incorporated into models that forecast carbon sequestration in grassland ecosystems; failure to do so will lead to underestimation of the carbon stock in drought years and overestimation of the carbon stock in wet years in grasslands.
DOI: 10.5281/zenodo.12548143
title: Experimental investigation of RVGs on a wind turbine airfoil

description: This project contains the data obtained as a result of the Preludium Grant no 2022/45/N/ST8/01425 of the Polish National Science Centre fundings. Within the "Aeroacoustic investigations of streamwise vortex generators for boundary layer separation control" project, two main research tasks were defined: 1. Post-processing and analysis of acoustic measurements using beamforming techniques to investigate RVGs effect on acoustic sources 2. Post-processing and analysis of Particle Image Velocimetry (PIV) data to investigate a flow structure downstream of RVG

The resutls from these tasks are uploaded here.  The details of the data are included in the EOP_medata_1.docx document uploaded. Further information regarding the data is published in the paper https://www.researchgate.net/publication/380825438_Aeroacoustic_effect_of_boundary_layer_separation_control_by_rod_vortex_generators_on_the_DU96-W-180_airfoil
DOI: 10.5281/zenodo.12548142
title: Experimental investigation of RVGs on a wind turbine airfoil

description: This project contains the data obtained as a result of the Preludium Grant no 2022/45/N/ST8/01425 of the Polish National Science Centre fundings. Within the "Aeroacoustic investigations of streamwise vortex generators for boundary layer separation control" project, two main research tasks were defined: 1. Post-processing and analysis of acoustic measurements using beamforming techniques to investigate RVGs effect on acoustic sources 2. Post-processing and analysis of Particle Image Velocimetry (PIV) data to investigate a flow structure downstream of RVG

The resutls from these tasks are uploaded here.  The details of the data are included in the EOP_medata_1.docx document uploaded. Further information regarding the data is published in the paper https://www.researchgate.net/publication/380825438_Aeroacoustic_effect_of_boundary_layer_separation_control_by_rod_vortex_generators_on_the_DU96-W-180_airfoil
DOI: 10.15468/dl.kn4qrp
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centroscyllium ritteri Jordan & Fowler, 1903",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 19 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001860-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udzbb5
title: Occurrence Download

description: A dataset containing 11347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Erica ciliaris L., Sphagnum L., Oxalis acetosella L.)"
 ]
}

 The dataset includes 11347 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001861-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.