cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16528209.v1
title: Data and R code for "Roosting ecology of endangered plant-roosting bats on Okinawa Island: implications for bat-friendly forestry practices"

description: Data and R code for the manuscript "Roosting ecology of endangered plant-roosting bats on Okinawa Island: implications for bat-friendly forestry practices" by Jason H. Preble, Christian E. Vincenot, Kazuhiko Saito, and Nobuhito Ohte published in <i>Ecology & Evolution</i>.<br><b>Abstract from manuscript</b><b></b>Roosting information is crucial to guiding bat conservation and bat-friendly forestry practices. The Ryukyu tube-nosed bat <i>Murina ryukyuana </i>(Endangered) and Yanbaru whiskered bat <i>Myotis yanbarensis </i>(Critically Endangered) are forest-dwelling bats endemic to the central Ryukyu Archipelago, Japan. Despite their threatened status, little is known about the roosting ecology of these species and the characteristics of natural maternity roosts are unknown. To inform sustainable forestry practices and conservation management, we radio-tracked day roosts of both species in the subtropical forests of Okinawa’s Kunigami Village district. We compared roost and roost site characteristics statistically between <i>M. ryukyuana </i>non-maternity roosts (males or non-reproductive females), maternity roosts, and all <i>M. yanbarensis </i>roosts. Generalized linear models were used to investigate roost site selection by <i>M. ryukyuana </i>irrespective of sex and age class. Lastly, we compiled data on phenology from this and prior studies. Non-reproductive <i>M. ryukyuana </i>roosted alone and primarily in understory foliage. <i>Murina ryukyuana </i>maternity roosts were limited to stands &gt;50 years old and ~60% were in foliage. <i>Myotis yanbarensis </i>roosted almost entirely in cavities along gulch bottoms and only in stands &gt;70 years old (~1/3 of Kunigami’s total forest area). <i>Murina ryukyuana </i>maternity roosts were higher (4.3 ± 0.6 m) than conspecific non-maternity roosts (2.3 ± 0.5 m; <i>P </i>&lt; 0.001) and <i>M. yanbarensis </i>roosts (2.7 ± 0.5 m; not significant). Model results were inconclusive. Both species appear to be obligate plant roosters throughout their life cycle, but the less flexible roosting preferences of <i>M. yanbarensis</i> may explain its striking rarity. To conserve these threatened bats, we recommend the following forestry practices: 1) reduce clearing of understory vegetation, 2) refrain from removing trees along streams, 3) promote greater tree cavity densities by protecting old-growth forests and retaining snags, and 4) refrain from removing trees or understory between April–July, while bats are pupping.<br><b>Ethical statement</b><b></b>This research was carried out under permits from Aha Dam Office, Kunigami Village Office, University of the Ryukyus Experimental Forest Yona Field, Okinawa Regional Forest Office, Okinawa Prefectural Government Hokubu Agriculture, Forestry and Fisheries Promotion Center, and the Japanese Ministry of the Environment. Animal research was also permitted by Kyoto University (permits Inf-K17008 and Inf-K19007).
DOI: 10.17903/fk2/10oswl
title: Collective action and protest in Greece under crisis (2009-2013)

description: This is a survey of the students of the Department of Sociology of the University of Crete, which took place in the context of a six-month seminar and a thesis. Students recorded Eleftherotypia newspaper publications on the 2010, 2011, and 2013 protest events from the newspaper's online archive, according to the research methodology for the protest events, and their first findings were imprinted in small papers.The data for 2012 have been derived from the thesis of Vassia Papageorgiou, who due to the termination of the release of Liberty print that year extracted her data from the online journal AYGI and the TVXS website. The recording of the 2009 protest events draws on the thesis of Sofia Karyka. The purpose of the survey was to record the incidents of protest during the period 2008-2013.The recording of protest events during the selected period was sought for the purpose of a comparative view of the fluctuation of collective action and of the protest year by year, while recording the contents of the collective action, their direction, its organizers, the forms chosen, their duration, place of occurrence, participation in social, professional and demographic groups and categories and their outcome.
DOI: 10.17903/fk2/fhqkeu
title: Συλλογική δράση και διαμαρτυρία στη Ελλάδα της κρίσης (2009-2013)

description: Πρόκειται για μια έρευνα των φοιτητών του Τμήματος Κοινωνιολογίας του Πανεπιστημίου Κρήτης που έγινε στο πλαίσιο ενός δισεξαμηνιαίου σεμιναρίου αλλά και πτυχιακών εργασιών. Οι φοιτητές κατέγραψαν τα δημοσιεύματα της εφημερίδας Ελευθεροτυπία που αφορούσαν τα γεγονότα διαμαρτυρίας των ετών 2010, 2011 και 2013 από το ηλεκτρονικό αρχείο της εφημερίδας, σύμφωνα με τη μεθοδολογία της έρευνας για τα γεγονότα διαμαρτυρίας και τα πρώτα ευρήματά τους έχουν αποτυπωθεί σε μικρές εργασίες. Τα δεδομένα του έτους 2012 έχουν αντληθεί από την πτυχιακή εργασία της Βάσιας Παπαγεωργίου, η οποία λόγω της παύσης έκδοσης της Ελευθεροτυπίας εκείνο το έτος άντλησε τα δεδομένα της από το ηλεκτρονικό αρχείο της εφημερίδας Η ΑΥΓΗ και τον ιστότοπο του TVXS. Η καταγραφή των γεγονότων διαμαρτυρίας του 2009 αντλείται από την πτυχιακή εργασία της Σοφίας Καρύκα. Η έρευνα έθεσε ως στόχο της την καταγραφή των συμβάντων διαμαρτυρίας κατά την περίοδο 2008-2013. Η καταγραφή των συμβάντων διαμαρτυρίας κατά την επιλεγείσα περίοδο επιδιώχθηκε για τις ανάγκες μιας συγκριτικής θέασης της κύμανσης της συλλογικής δράσης και της διαμαρτυρίας κατά έτος, ταυτόχρονα με την καταγραφή των περιεχομένων της συλλογικής δράσης, την απεύθυνσή τους, των οργανωτών της, των μορφών που επελέγησαν, τη διάρκειά τους, τον τόπο της εκδήλωσής τους, τη συμμετοχή κοινωνικών, επαγγελματικών και δημογραφικών ομάδων και κατηγοριών σε αυτές και την έκβασή τους.
DOI: 10.5281/zenodo.5517607
title: SSAM-lite test data

description: Spatially resolved transcriptomics datasets prepared from different publications to be used as sample data sets for the SSAM-lite tool. Each folder contains a dataset including: one (or more) files for mRNA locations, formatted as a comma separated file adhering to the DecodedSpots format defined by the Starfish pipeline (https://spacetx-starfish.readthedocs.io/en/mcai-api-additions/help_and_reference/spacetx-format/output_formats/DecodedSpots/index.html). This format is intuitive, with fields for the target mRNA, the x-coordinate and the y-coordinate. a gene signature file, containing expected mRNA expression profiles for cell types, formatted as a comma separated file with rows as cell types, columns as genes, with the matrix populated with numerical or binary values associating mRNA expression to cell types. and a README referencing the original publication the data was retrieved from as well as some datset specifications. Datsets specifications: Codeluppi_osmFISH method: osmFISH tissue: mouse brain somatosensory cortex mRNA spots: 1802589 genes: 33 signatures: 31 cell types DOI: 10.1038/s41592-018-0175-z Tosti_ISS_Pancreas method: ISS tissue: human pancreas mRNA spots: 461078 genes: 138 signatures: 16 cell types DOI: 10.1053/j.gastro.2020.11.010
DOI: 10.6084/m9.figshare.16726063
title: XingyueCaoSupplemental table.docx

description: <b>This data is about the </b><b>relationship between targeted mutations and malignant risk characteristics of PTC subtypes.</b><b></b>
DOI: 10.6084/m9.figshare.16726063.v1
title: XingyueCaoSupplemental table.docx

description: <b>This data is about the </b><b>relationship between targeted mutations and malignant risk characteristics of PTC subtypes.</b><b></b>
DOI: 10.15161/oar.it/74153
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.25919/32hb-yj65
title: Parkes observations for project P1032 semester 2021APRS_17

description: This project aims to continue to perform rapid measurements of relativistic parameters of southern binary pulsar systems using data from the Parkes Ultra Wideband Low (UWL) receiver and the MeerKAT telescope thereby enabling measurement of their component masses and in some cases, test theories of gravity. We will use the UWL data to obtain significant orbital coverage and timing baseline on these pulsars and obtain important constraints on orbital and temporal DM variations that will help in identifying the nature of the companion star. We will then use MeerKAT data at crucial orbital phases to improve our chances of measuring the relativistic parameters. Increase in the number of measured NS masses has profound implications for NS internal structure and for stellar and binary evolution physics. From this semester, we are converting this proposal into a ``Large project" proposal.
DOI: 10.6084/m9.figshare.16726114
title: axSpA / PsA data set F1000.xlsx

description: Clinical data set as well as ASAS health index items in patients with axial spondyloarthritis and psoriatic arthritis
DOI: 10.6084/m9.figshare.16726114.v1
title: axSpA / PsA data set F1000.xlsx

description: Clinical data set as well as ASAS health index items in patients with axial spondyloarthritis and psoriatic arthritis
DOI: 10.25919/nek9-ec03
title: Parkes pulsar observations with undefined project IDs for 2021APRS_17

description: Parkes pulsar observations with undefined project IDs for 2021APRS. This collection contains observations from project ID PX079.
DOI: 10.5281/zenodo.5545760
title: Imaging Mass Cytometry Images (APP1) from: A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially resolved tissue phenotyping at single-cell resolution.

description: Four µm-thick sections were cut from the APP1 FFPE block with a microtome and used for staining with a panel of 26 antibodies targeting the main immune, stromal and epithelial cell populations of the gastrointestinal tract (Supplementary Table 2). The optimal dilution of each antibody in the panel was identified by staining and ablating FFPE appendix sections. The resulting images were reviewed by a mucosal immunologist (J.S.) and the dilution giving the best signal to background ratio was selected for each antibody (Supplementary Table 2). To perform the staining for IMC, slides were dewaxed after a one-hour incubation at 60°C, rehydrated and heat-induced antigen retrieval was performed with a pressure cooker in Antigen Retrieval Reagent-Basic (R&D Systems). Slides were incubated in a 10% BSA (Sigma), 0.1% Tween (Sigma), and 2% Kiovig (Shire Pharmaceuticals) Superblock Blocking Buffer (Thermo Fisher) blocking solution at room temperature for two hours. Each antibody was added to a primary antibody mix at the selected concentration in blocking solution and incubated overnight at 4°C. After two washes in PBS and PBS-0.1% Tween, the slides were treated with the DNA intercalator Cell-ID™ Intercalator-Ir (Fluidigm) (containing the two iridium isotopes 191Ir and 193Ir) 1.25 mM in a PBS solution. After a 30-minute incubation, the slides were washed once in PBS and once in MilliQ water and air-dried. The stained slides were then loaded in the Hyperion Imaging System (Fluidigm) imaging module to obtain light-contrast high resolution images of approximately four mm<sup>2</sup>. These images were used to select the ROI in each slide. For APP1, a one mm<sup>2</sup> ROI containing a lymphoid follicle in its whole depth alongside a portion of lamina propria and of epithelium was selected. ROIs were ablated at a o µm/pixel resolution and 200 Hz frequency.
description: The APP_1_raw_tiff_metadata.csv file matches each label to each file, 25 16bit tiff single channel tiff files.
DOI: 10.5281/zenodo.5543572
title: Imaging Mass Cytometry Images (APP1) from: A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially resolved tissue phenotyping at single-cell resolution.

description: Four µm-thick sections were cut from the APP1 FFPE block with a microtome and used for staining with a panel of 26 antibodies targeting the main immune, stromal and epithelial cell populations of the gastrointestinal tract (Supplementary Table 2). The optimal dilution of each antibody in the panel was identified by staining and ablating FFPE appendix sections. The resulting images were reviewed by a mucosal immunologist (J.S.) and the dilution giving the best signal to background ratio was selected for each antibody (Supplementary Table 2). To perform the staining for IMC, slides were dewaxed after a one-hour incubation at 60°C, rehydrated and heat-induced antigen retrieval was performed with a pressure cooker in Antigen Retrieval Reagent-Basic (R&D Systems). Slides were incubated in a 10% BSA (Sigma), 0.1% Tween (Sigma), and 2% Kiovig (Shire Pharmaceuticals) Superblock Blocking Buffer (Thermo Fisher) blocking solution at room temperature for two hours. Each antibody was added to a primary antibody mix at the selected concentration in blocking solution and incubated overnight at 4°C. After two washes in PBS and PBS-0.1% Tween, the slides were treated with the DNA intercalator Cell-ID™ Intercalator-Ir (Fluidigm) (containing the two iridium isotopes 191Ir and 193Ir) 1.25 mM in a PBS solution. After a 30-minute incubation, the slides were washed once in PBS and once in MilliQ water and air-dried. The stained slides were then loaded in the Hyperion Imaging System (Fluidigm) imaging module to obtain light-contrast high resolution images of approximately four mm<sup>2</sup>. These images were used to select the ROI in each slide. For APP1, a one mm<sup>2</sup> ROI containing a lymphoid follicle in its whole depth alongside a portion of lamina propria and of epithelium was selected. ROIs were ablated at a o µm/pixel resolution and 200 Hz frequency.
description: The APP_1_raw_tiff_metadata.csv file matches each label to each file, 25 16bit tiff single channel tiff files.
DOI: 10.5281/zenodo.5545722
title: Vanishing_Glaciers_Epilithic_Biofilms_Data

description: Metagenomic data from epilithic biofilms obtained from Glacer-fed streams as part of the Vanishing Glaciers Project, funded by NOMIS
DOI: 10.5281/zenodo.5545721
title: Vanishing_Glaciers_Epilithic_Biofilms_Data

description: Metagenomic data from epilithic biofilms obtained from Glacer-fed streams as part of the Vanishing Glaciers Project, funded by NOMIS
DOI: 10.5281/zenodo.5545794
title: The eccentric phase in unilateral resistance training enhances and preserves the contralateral strength gains after detraining in women: a randomized-controlled trial

description: Dataset
DOI: 10.5281/zenodo.5545793
title: The eccentric phase in unilateral resistance training enhances and preserves the contralateral strength gains after detraining in women: a randomized-controlled trial

description: Dataset
DOI: 10.25646/9111
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.6084/m9.figshare.16726147
title: Research Data for the reseach paper of global carbonate weathering carbon sink model

description: Original figure data for the reseach paper of global carbonate weathering carbon sink model
DOI: 10.6084/m9.figshare.16726144
title: C30_CSR_GFZ_JPL_BUF150_L55_no_GIA_restored.ts

description: This datset contains GSM-like C30 coefficients estimated through the GRACE-OBP approach for threee data centers, i.e., CSR, GFZ and JPL. The implementation parameters are selected based on an end-to-end synthetic study (taking into account self-attraction and loading effects, truncating the input time-variable gravity filed models at degree 55, using an ocean function defined with a buffer width of 150 km.
DOI: 10.6084/m9.figshare.16726144.v1
title: C30_CSR_GFZ_JPL_BUF150_L55_no_GIA_restored.ts

description: This datset contains GSM-like C30 coefficients estimated through the GRACE-OBP approach for threee data centers, i.e., CSR, GFZ and JPL. The implementation parameters are selected based on an end-to-end synthetic study (taking into account self-attraction and loading effects, truncating the input time-variable gravity filed models at degree 55, using an ocean function defined with a buffer width of 150 km.
DOI: 10.34740/kaggle/dsv/2670555
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.34740/kaggle/dsv/2670575
title: 2021 World Population (updated daily)
DOI: 10.5281/zenodo.4058532
title: Genomic insights into the formation of human populations in East Asia

description: The genotypes of 383 present-day individuals from 46 populations indigenous to China (n=337) and Nepal (n=46) using the Affymetrix Human Origins array.
DOI: 10.5281/zenodo.4058531
title: Genomic insights into the formation of human populations in East Asia

description: The genotypes of 383 present-day individuals from 46 populations indigenous to China (n=337) and Nepal (n=46) using the Affymetrix Human Origins array.
DOI: 10.5281/zenodo.5545833
title: Nedystoma dayi RB0467 ARBOR SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5545832
title: Nedystoma dayi RB0467 ARBOR SPAdes preassembly

description: .
DOI: 10.34740/kaggle/dsv/2670667
title: Twitter: Trending Tweets per week (updated weekly)
DOI: 10.34740/kaggle/dsv/2670687
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.5545838
title: Mevalonate kinase variants

description: This dataset describes the effects of several mutations to human mevalonate kinase. The dataset is designed to be used with the Aquaria molecular graphics system (e.g., https://aquaria.app/Mouse/MVK?zenodo.3632187).
DOI: 10.5281/zenodo.5545860
title: Mevalonate kinase variants

description: This dataset describes the effects of several mutations to human mevalonate kinase. The dataset is designed to be used with the Aquaria molecular graphics system (e.g., https://aquaria.app/Mouse/MVK?zenodo.3632187.V377I or https://aquaria.app/Mouse/MVK?zenodo.3632187.Δ91).
DOI: 10.5281/zenodo.5545865
title: Mevalonate kinase variants

description: This dataset describes the effects of several mutations to human mevalonate kinase. The dataset is designed to be used with the Aquaria molecular graphics system (e.g., https://aquaria.app/Mouse/MVK?zenodo.3632187.V377I or https://aquaria.app/Mouse/MVK?zenodo.3632187.Δ91).
DOI: 10.5281/zenodo.5545867
title: A Spatiotemporal Dataset of Irrigated Agricultural Areas Across the Coastal Plain Region of South Carolina; USA

description: A Spatiotemporal Dataset of Irrigated Agricultural Areas Across the Coastal Plain Region of South Carolina; USA
DOI: 10.5281/zenodo.5545899
title: Experimental data of "Novel flow modulation method for R744 two-phase ejectors – Proof of concept, optimization and first experimental results"

description: Experimental data of "Novel flow modulation method for R744 two-phase ejectors – Proof of concept, optimization and first experimental results"
DOI: 10.5281/zenodo.5545898
title: Experimental data of "Novel flow modulation method for R744 two-phase ejectors – Proof of concept, optimization and first experimental results"

description: Experimental data of "Novel flow modulation method for R744 two-phase ejectors – Proof of concept, optimization and first experimental results"
DOI: 10.18112/openneuro.ds003643.v1.0.3
title: Le Petit Prince: A multilingual fMRI corpus using ecological stimuli
DOI: 10.5281/zenodo.5545882
title: Imaging Mass Cytometry of human normal colon mucosa (CLN1-6) from: A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially resolved tissue phenotyping at single-cell resolution.

description: Four µm-thick sections were cut from each block of samples CLN1-CLN6 with a microtome and used for staining with a panel of 26 antibodies targeting the main immune, stromal and epithelial cell populations of the gastrointestinal tract (Supplementary Table 2). The optimal dilution of each antibody in the panel was identified by staining and ablating FFPE appendix sections. The resulting images were reviewed by a mucosal immunologist (J.S.) and the dilution giving the best signal to background ratio was selected for each antibody (Supplementary Table 2). To perform the staining for IMC, slides were dewaxed after a one-hour incubation at 60°C, rehydrated and heat-induced antigen retrieval was performed with a pressure cooker in Antigen Retrieval Reagent-Basic (R&D Systems). Slides were incubated in a 10% BSA (Sigma), 0.1% Tween (Sigma), and 2% Kiovig (Shire Pharmaceuticals) Superblock Blocking Buffer (Thermo Fisher) blocking solution at room temperature for two hours. Each antibody was added to a primary antibody mix at the selected concentration in blocking solution and incubated overnight at 4°C. After two washes in PBS and PBS-0.1% Tween, the slides were treated with the DNA intercalator Cell-ID™ Intercalator-Ir (Fluidigm) (containing the two iridium isotopes 191Ir and 193Ir) 1.25 mM in a PBS solution. After a 30-minute incubation, the slides were washed once in PBS and once in MilliQ water and air-dried. The stained slides were then loaded in the Hyperion Imaging System (Fluidigm) imaging module to obtain light-contrast high resolution images of approximately four mm<sup>2</sup>. These images were used to select the ROI in each slide. For CLN1-CLN6, 1 mm<sup>2 </sup>ROIs were selected to contain the full thickness of the colon mucosa, with epithelial crypts in longitudinal orientation. ROIs were ablated at a o µm/pixel resolution and 200 Hz frequency. Twenty-eight images from 26 antibodies (Supplementary Table 2) and two DNA intercalators were obtained from the raw .txt files of the ablated regions in CLN1-CLN6 using the data extraction process.
description: .mcd files with one or more ablated ROIs channel_metadata.csv = Assigns each metal/channel to the corresponding marker raw_file_metadata.csv = Assigns each sample to an ROI and a .mcd file