cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6973367.v1
title: Additional file 4: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: List of all identified and validated HD-specific RIs. (XLS 63 kb)
DOI: 10.6084/m9.figshare.6973358
title: Additional file 3: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: List of all identified and validated HN-specific RIs. (XLS 92 kb)
DOI: 10.6084/m9.figshare.6973358.v1
title: Additional file 3: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: List of all identified and validated HN-specific RIs. (XLS 92 kb)
DOI: 10.6084/m9.figshare.6973346
title: Additional file 2: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: List of all identified and validated Chimp-specific RIs. (XLS 195 kb)
DOI: 10.6084/m9.figshare.6973340
title: Additional file 2: of Hypoxia promotes acquisition of aggressive phenotypes in human malignant mesothelioma

description: All dataset and their information about statistical analysis in the present are deposited in this Excel spreadsheets. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.6973346.v1
title: Additional file 2: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: List of all identified and validated Chimp-specific RIs. (XLS 195 kb)
DOI: 10.6084/m9.figshare.6973340.v1
title: Additional file 2: of Hypoxia promotes acquisition of aggressive phenotypes in human malignant mesothelioma

description: All dataset and their information about statistical analysis in the present are deposited in this Excel spreadsheets. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.6973331
title: Additional file 1: of Hypoxia promotes acquisition of aggressive phenotypes in human malignant mesothelioma

description: Table S1. The list of primers used in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6973331.v1
title: Additional file 1: of Hypoxia promotes acquisition of aggressive phenotypes in human malignant mesothelioma

description: Table S1. The list of primers used in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6973304
title: Additional file 16: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: ToppCluster analysis results for GO terms associated with genes containing AMH-specific RIs. Loci enriched for sapiens-specific GO terms are listed first, followed by loci enriched for Hominina-specific GO terms and, finally, by loci with non-specific GO-terms. (XLS 159 kb)
DOI: 10.6084/m9.figshare.6973298
title: Additional file 2: of Evolutionarily conserved partial gene duplication in the Triticeae tribe of grasses confers pathogen resistance

description: Table S1. Passport, phenotypic and gene haplotype data of barley accessions in the WHEALBI populations used for association mapping. Table S2. SNP calls and derived gene haplotypes for HvARM1. Table S3. SNP calls and derived gene haplotypes for HvPUB15. Table S4. Details of partial gene duplicate pairs in the barley genome. Table S5. Evolutionary conservation of partial gene duplicates in Triticeae tribe. Table S6. Transcript regulation of partial duplicates in host (Bgh) and non-host (Bgt) powdery mildew interaction in barley. Table S7. Primary microarray signal intensity data of HvThf1 and HvClpS1. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.6973304.v1
title: Additional file 16: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: ToppCluster analysis results for GO terms associated with genes containing AMH-specific RIs. Loci enriched for sapiens-specific GO terms are listed first, followed by loci enriched for Hominina-specific GO terms and, finally, by loci with non-specific GO-terms. (XLS 159 kb)
DOI: 10.6084/m9.figshare.6973298.v1
title: Additional file 2: of Evolutionarily conserved partial gene duplication in the Triticeae tribe of grasses confers pathogen resistance

description: Table S1. Passport, phenotypic and gene haplotype data of barley accessions in the WHEALBI populations used for association mapping. Table S2. SNP calls and derived gene haplotypes for HvARM1. Table S3. SNP calls and derived gene haplotypes for HvPUB15. Table S4. Details of partial gene duplicate pairs in the barley genome. Table S5. Evolutionary conservation of partial gene duplicates in Triticeae tribe. Table S6. Transcript regulation of partial duplicates in host (Bgh) and non-host (Bgt) powdery mildew interaction in barley. Table S7. Primary microarray signal intensity data of HvThf1 and HvClpS1. (XLSX 90 kb)
DOI: 10.5517/ccdc.csd.cc215w37
title: CCDC 1882478: Experimental Crystal Structure Determination

description: Related Article: S. Shalini, S. Shahil Kirupavathy, M. Infant Shyam Kumar|2020|J.Mol.Struct.|1224|129078|doi:10.1016/j.molstruc.2020.129078
description: Related Article: S. Shalini, S. Shahil Kirupavathy, Eunice Jerusha|2018|CSD Communication|||
DOI: 10.6084/m9.figshare.6973262
title: Additional file 2: of How general practitioners understand and handle medically unexplained symptoms: a focus group study

description: The OPR reports. (ZIP 65 kb)
DOI: 10.6084/m9.figshare.6973262.v1
title: Additional file 2: of How general practitioners understand and handle medically unexplained symptoms: a focus group study

description: The OPR reports. (ZIP 65 kb)
DOI: 10.6084/m9.figshare.6973256
title: Additional file 13: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: 3P-CLR estimate on all AMH-specific RIs autosomal insertional loci. All insertional loci are listed in order of number of SNPs present in the 200Â kb window that are associated with post-Out-of-Africa selection. (XLS 71 kb)
DOI: 10.6084/m9.figshare.6973256.v1
title: Additional file 13: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: 3P-CLR estimate on all AMH-specific RIs autosomal insertional loci. All insertional loci are listed in order of number of SNPs present in the 200Â kb window that are associated with post-Out-of-Africa selection. (XLS 71 kb)
DOI: 10.6084/m9.figshare.6973238
title: Additional file 12: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: Distribution of AMH-specific RIs in present day human populations. TMRCAs calculated for each insertional locus are also reported. Colors from green to red highlight progressively increasing frequencies of presence. (XLS 374 kb)
DOI: 10.6084/m9.figshare.6973238.v1
title: Additional file 12: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: Distribution of AMH-specific RIs in present day human populations. TMRCAs calculated for each insertional locus are also reported. Colors from green to red highlight progressively increasing frequencies of presence. (XLS 374 kb)
DOI: 10.5517/ccdc.csd.cc1jh708
title: CCDC 1414809: Experimental Crystal Structure Determination

description: Related Article: K. Nivetha, K. Aravinth, K. Senthil, S. Kalainathan|2020|CSD Communication|||
description: Related Article: K. Nivetha, K. Aravinth, K. Senthil, S. Kalainathan|2021|J.Mol.Struct.|1225|129082|doi:10.1016/j.molstruc.2020.129082
DOI: 10.6084/m9.figshare.6973217
title: Additional file 11: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: Distribution of putatively HN-specific RIs in present day human populations. Polymorphic RIs and their frequency in modern populations from the 1000 Genomes Project are listed on top, with non-polymorphic RIs listed underneath them. Colors from green to red highlight progressively increasing frequencies of presence. (XLS 53 kb)
DOI: 10.6084/m9.figshare.6973217.v1
title: Additional file 11: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: Distribution of putatively HN-specific RIs in present day human populations. Polymorphic RIs and their frequency in modern populations from the 1000 Genomes Project are listed on top, with non-polymorphic RIs listed underneath them. Colors from green to red highlight progressively increasing frequencies of presence. (XLS 53 kb)
DOI: 10.6084/m9.figshare.6973202
title: Additional file 1: of Chemotherapy-induced peripheral neuropathy: evidence from genome-wide association studies and replication within multiple myeloma patients

description: Eligible SNPs from literature for the replication. The information extracted for 526 SNPs in 109 loci that met the inclusion criteria for the replication; In each locus the most significantly associated SNP from the literature is highlighted. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.6973199
title: Additional file 10: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: Distribution of putatively HD-specific RIs in present day human populations. Polymorphic RIs and their frequency in modern populations from the 1000 Genomes Project are listed on top, with non-polymorphic RIs listed underneath them. Colors from green to red highlight progressively increasing frequencies of presence. (XLS 41 kb)
DOI: 10.6084/m9.figshare.6973202.v1
title: Additional file 1: of Chemotherapy-induced peripheral neuropathy: evidence from genome-wide association studies and replication within multiple myeloma patients

description: Eligible SNPs from literature for the replication. The information extracted for 526 SNPs in 109 loci that met the inclusion criteria for the replication; In each locus the most significantly associated SNP from the literature is highlighted. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.6973199.v1
title: Additional file 10: of Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

description: Distribution of putatively HD-specific RIs in present day human populations. Polymorphic RIs and their frequency in modern populations from the 1000 Genomes Project are listed on top, with non-polymorphic RIs listed underneath them. Colors from green to red highlight progressively increasing frequencies of presence. (XLS 41 kb)
DOI: 10.23641/asha.6972857
title: Cross-linguistic consonant acquisition (McLeod & Crowe, 2018)

description: <b>Purpose: </b>The aim of this study was to provide a cross-linguistic review of acquisition of consonant phonemes to inform speech-language pathologists’ expectations of children’s developmental capacity by (a) identifying characteristics of studies of consonant acquisition, (b) describing general principles of consonant acquisition, and (c) providing case studies for English, Japanese, Korean, and Spanish.<b>Method:</b> A cross-linguistic review was undertaken of 60 articles describing 64 studies of consonant acquisition by 26,007 children from 31 countries in 27 languages: Afrikaans, Arabic, Cantonese, Danish, Dutch, English, French, German, Greek, Haitian Creole, Hebrew, Hungarian, Icelandic, Italian, Jamaican Creole, Japanese, Korean, Malay, Maltese, Mandarin (Putonghua), Portuguese, Setswana (Tswana), Slovenian, Spanish, Swahili, Turkish, and Xhosa.<b>Results: </b>Most studies were cross-sectional and examined single word production. Combining data from 27 languages, most of the world’s consonants were acquired by 5;0 years; months old. By 5;0, children produced at least 93% of consonants correctly. Plosives, nasals, and nonpulmonic consonants (e.g., clicks) were acquired earlier than trills, flaps, fricatives, and affricates. Most labial, pharyngeal, and posterior lingual consonants were acquired earlier than consonants with anterior tongue placement. However, there was an interaction between place and manner where plosives and nasals produced with anterior tongue placement were acquired earlier than anterior trills, fricatives, and affricates.<b>Conclusions: </b>Children across the world acquire consonants at a young age. Five-year-old children have acquired most consonants within their ambient language; however, individual variability should be considered.<br><b>Supplemental Material S1.</b> Average age of acquisition of pulmonic and nonpulmonic consonants across studies.<br><b>Supplemental Material S2. </b>Mean age (in months) of acquisition of consonant phonemes across all languages organized by manner of articulation using 75–85% and 90–100% criteria. Reprinted with permission from McLeod and Crowe (2018).<b><br></b><b>Supplemental Material S3. </b>Mean age of acquisition of pulmonic consonant phonemes in months across all languages organized by place of articulation using 75–85% and 90–100% criteria. Reprinted with permission from McLeod and Crowe (2018).<br>McLeod, S., & Crowe, K. (2018). Children's consonant acquisition in 27 languages: A cross-linguistic review. <i>American Journal of Speech-Language Pathology. </i>Advance online publication. https://doi.org/10.1044/2018_AJSLP-17-0100
DOI: 10.6084/m9.figshare.6972956.v1
title: A shiny update to an old experiment game

description: Games can be a powerful tool for learning about statistical methodology. Effective game design involves a fine balance between caricature and realism, to simultaneously illustrate salient concepts in a controlled setting and serve as a testament to real-world applicability. Striking that balance is particularly challenging in response surface and design domains, where real-world scenarios often play out over long time scales, during which theories are revised, model and inferential techniques are improved, and knowledge is updated. Here I present a game, borrowing liberally from one first played over forty years ago, that attempts to achieve that balance while reinforcing a cascade of topics in modern nonparametric response surfaces, sequential design and optimization. The game embeds a blackbox simulation within a shiny app whose interface is designed to simulate a realistic information-availability setting, while offering a stimulating, competitive environment wherein students can try out new methodology, and ultimately appreciate its power and limitations. Interface, rules, timing with course material, and evaluation are described, along with a “case study” involving a cohort of students at Virginia Tech.
DOI: 10.6084/m9.figshare.6972842
title: The choreography of learning walks in the Australian jack jumper ant Myrmecia croslandi

description: Example image series of a learning walkData in Matlab structures<br>
DOI: 10.6084/m9.figshare.6972842.v1
title: The choreography of learning walks in the Australian jack jumper ant Myrmecia croslandi

description: Example image series of a learning walkData in Matlab structures<br>
DOI: 10.6084/m9.figshare.6972824.v1
title: A New Approach to Identifying the Real Effects of Uncertainty Shocks

description: This paper introduces the use of the sign restrictions methodology to identify uncertainty shocks. We apply our methodology to a class of vector autoregression models with stochastic volatility that allow volatility fluctuations to impact the conditional mean. We combine sign restrictions on the conditional mean and conditional second moment impulse responses to identify financial and macro uncertainty shocks. On U.S. data, we find stronger evidence that financial uncertainty shocks lead to a decline in real activity and an easing of the federal funds rate relative to macro uncertainty shocks.
DOI: 10.6084/m9.figshare.6972788
title: eTS database_Shirotake et al_Molecular and Clinical Oncology 2018

description: The renal tumors or metastatic lesions of 127 were evaluated by CT or MRI 90 days before molecular targeted tharapy (MTT) treatment (as baseline scans) as well as between 30 and 90 days after MTT (as first post baseline scans). Two urologists (HK and TO) and a radiologist (SM) blindly measured the sum of the longest diameters (SLD) in each case, based on the Response Evaluation Criteria in Solid Tumors (RECIST) version 1.1. Tumor shrinkage was determined based on the change in SLD of target lesions at the first post baseline scan.
DOI: 10.6084/m9.figshare.6972782
title: All patients list_Shirotake et al_Molecular and Clinical Oncology 2018.xlsx

description: A list of the clinical and pathological data of 209 patients with advanced renal cell carcinoma (with or without metastasis) treated with molecular targeted therapy between April 25, 2008 and February 27, 2017 in Saitama Medical University International Medical Center. These patients in this list were automatically isolated from electronic medical records using the terms “sorafenib”, “sunitinib”, “axitinib”, “pazopanib”, “temsirolimus”, “everolimus”, “renal tumor”, and “renal cell carcinoma”. The analyses of this data is published in Molecular and Clinical Oncology.
DOI: 10.6084/m9.figshare.6972779
title: scaled gene-cell matrix after cell cycle is regressed out

description: scaled gene-cell matrix after cell cycle is regressed out
DOI: 10.6084/m9.figshare.6972788.v2
title: eTS database_Shirotake et al_Molecular and Clinical Oncology 2018

description: The renal tumors or metastatic lesions of 127 were evaluated by CT or MRI 90 days before molecular targeted tharapy (MTT) treatment (as baseline scans) as well as between 30 and 90 days after MTT (as first post baseline scans). Two urologists (HK and TO) and a radiologist (SM) blindly measured the sum of the longest diameters (SLD) in each case, based on the Response Evaluation Criteria in Solid Tumors (RECIST) version 1.1. Tumor shrinkage was determined based on the change in SLD of target lesions at the first post baseline scan.
DOI: 10.6084/m9.figshare.6972779.v1
title: scaled gene-cell matrix after cell cycle is regressed out

description: scaled gene-cell matrix after cell cycle is regressed out
DOI: 10.6084/m9.figshare.6972788.v1
title: eTS database

description: The renal tumors or metastatic lesions of 127 were evaluated by CT or MRI 90 days before molecular targeted tharapy (MTT) treatment (as baseline scans) as well as between 30 and 90 days after MTT (as first post baseline scans). Two urologists (HK and TO) and a radiologist (SM) blindly measured the sum of the longest diameters (SLD) in each case, based on the Response Evaluation Criteria in Solid Tumors (RECIST) version 1.1. Tumor shrinkage was determined based on the change in SLD of target lesions at the first post baseline scan.
DOI: 10.6084/m9.figshare.6972776
title: jgr_data.zip

description: This includes all the data used in the JGR 2018 paper.
DOI: 10.6084/m9.figshare.6972776.v1
title: jgr_data.zip

description: This includes all the data used in the JGR 2018 paper.
DOI: 10.6084/m9.figshare.6972740
title: Extra Data Tables for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'

description: Data Tables for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'
DOI: 10.6084/m9.figshare.6972746
title: Pi database for drug target prioritisations in 30 immune traits

description: The Pi relational database (in MySQL format) contains genetics-led drug target prioritizations for 30 immune traits, used to power a web interface http://pi.well.ox.ac.uk. For each prioritized gene, it provides priority rating, data used for predictor preparation, current therapeutic drugs with phase of development, and different measurements on druggability. Schema documentation and diagram are also provided giving instructions on how to install and use the database.<br>
DOI: 10.6084/m9.figshare.6972740.v1
title: Data Tables for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'

description: Data Tables for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'
DOI: 10.6084/m9.figshare.6972746.v1
title: Pi database for drug target prioritizations in 30 immune traits

description: The Pi relational database (in MySQL format) contains genetics-led drug target prioritizations for 30 immune traits, used to power a web-interface http://pi.well.ox.ac.uk. For each prioritized gene, it provides priority rating, data supporting predictor preparation, current therapeutic drugs with phase of development, and different measurements on druggability. Schema documentation and diagram are also provided to give instructions on how to install and use the database.<br>
DOI: 10.6084/m9.figshare.6972740.v2
title: Data Tables for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'

description: Data Tables for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'
DOI: 10.6084/m9.figshare.6972746.v2
title: Pi database for drug target prioritizations in 30 immune traits

description: The Pi relational database (in MySQL format) contains genetics-led drug target prioritizations for 30 immune traits, used to power a web interface http://pi.well.ox.ac.uk. For each prioritized gene, it provides priority rating, data used for predictor preparation, current therapeutic drugs with phase of development, and different measurements on druggability. Schema documentation and diagram are also provided giving instructions on how to install and use the database.<br>
DOI: 10.6084/m9.figshare.6972740.v3
title: Data Tables for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'

description: Data Tables for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'
DOI: 10.6084/m9.figshare.6972707
title: Extra Data Figures for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'

description: Data Figures for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'
DOI: 10.6084/m9.figshare.6972707.v2
title: Extra Data Figures for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'

description: Data Figures for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'
DOI: 10.6084/m9.figshare.6972707.v1
title: Data Figures for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'

description: Data Figures for 'Correlated Evolution of two Copulatory Organs via a Single Cis-Regulatory Nucleotide Change'
DOI: 10.6084/m9.figshare.6972569
title: Rock_Mask

description: Segmented rock matrix for image: Rock-Filtered This binary image is used as a mask to exclude the rock matrix from the subsequent 3D images of this dataset. Segmentation performed using Watershed segmentation in Avizo. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6972569.v1
title: Rock_Mask

description: Segmented rock matrix for image: Rock-Filtered This binary image is used as a mask to exclude the rock matrix from the subsequent 3D images of this dataset. Segmentation performed using Watershed segmentation in Avizo. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6972563
title: Rock-Filtered

description: Filtered using Non-local means filter in Avizo software. Image Dimension: 1024×1024×845 Image Type: 8 bit
DOI: 10.6084/m9.figshare.6972563.v1
title: Rock-Filtered

description: Filtered using Non-local means filter in Avizo software. Image Dimension: 1024×1024×845 Image Type: 8 bit