cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3629579_d5
title: Additional file 6: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

description: GSA results for the DEGs detected with an adjusted p
DOI: 10.6084/m9.figshare.c.3629591_d1
title: Additional file 1: Table S1. of Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

description: Gene ontology (biological process) of assembled unigenes of newly released nauplii larvae of B. amphitrite. Biological process information was obtained by transferring homologous genes to barnacle contigs using a custom transcript. Table S2. Top 10 gene ontology terms for assembled unigenes of newly released nauplii larvae of B. amphitrite. Selected genes involved in a) larval development, b) signal transduction, c) in response to environment stressors, and d) osmoregulation. Table S3. Gene ontology (molecular function) for assembled unigenes of newly released nauplii larvae of B. amphitrite. Molecular process information was obtained by transferring homologous genes to barnacle contigs using a custom transcript. Table S4. Gene ontology (cellular component) for assembled contigs of newly released nauplii larvae of B. amphitrite. Cellular component information was obtained by transferring homologous genes to barnacle contigs using a custom transcript. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3629579_d6
title: Additional file 7: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

description: List of DEGs and their FC values associated with the hormone and phenylpropanoid metabolism and defense. (XLSX 150 kb)
DOI: 10.6084/m9.figshare.c.3629591_d2
title: Additional file 7: Table S10. of Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

description: Down-regulated proteins involved in homeostasis and energy metabolism in newly released nauplii larvae of Red Sea B. amphitrite. Hits were based on the number of unique peptides identified, the spectrum count and sequence coverage. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3629579_d7
title: Additional file 5: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

description: DEGs detected with an adjusted p
DOI: 10.6084/m9.figshare.c.3629591_d3
title: Additional file 6: Table S9. of Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

description: Up-regulated proteins involved in the stress response and osmoregulation in newly released nauplii larvae of Red Sea B. amphitrite. Hits were based on the number of unique peptides identified, the spectrum count and sequence coverage. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3629591_d5
title: Additional file 3: Table S6. of Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

description: Top 30 Pfam domains predicted from the transcriptome of newly released nauplii of B. amphitrite. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3629579_d9
title: Additional file 2: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

description: DEGs detected with absolute FC &gt; 2 and adjusted p
DOI: 10.6084/m9.figshare.c.3629591_d6
title: Additional file 8: Table S11. of Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

description: List of differentially expressed proteins involved in cellular metabolism in newly released nauplii larvae of Red Sea B. amphitrite. Hits were based on the number of unique peptides identified, the spectrum count and sequence coverage. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3629579_d10
title: Additional file 9: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

description: List of Arabidopsis -tomato-grapevine orthologous trios. (XLSX 749 kb)
DOI: 10.6084/m9.figshare.c.3629600_d2
title: Additional file 12: Table S3. of IMPACT is a GCN2 inhibitor that limits lifespan in Caenorhabditis elegans

description: qPCR data of Additional file 9: Figure S9. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3630560_d4
title: Additional file 8: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: Binding pockets in the structures of AoXlnR and AoAmyR with DoG score ≥ 0.8. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3630560_d5
title: Additional file 6: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: Threading templates used for multi template modeling of the A. oryzae transcription factors viz., AoXlnR, AoAmyR and AoCreA along with their secondary structure alignments. Structure evaluation scores for modeled transcription factors of the A. oryzae transcription factors viz., AoXlnR, AoAmyR and AoCreA. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3630524_d7
title: Additional file 4: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: List of G-type PtLecRLKs. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3630560_d6
title: Additional file 1: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: Chemical description of the 10 sugar molecules used in the study. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3630572_d3
title: Additional file 9: Table S7. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Average BMI by genotype for rs6435678 in MESA and WHI African Americans. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3630587_d1
title: Additional file 1: of Frequency of BRAF V600E mutations in 969 central nervous system neoplasms

description: List of all analyzed tumor samples with the corresponding histopathological diagnosis and age atdiagnosis. (XLS 129 kb)
DOI: 10.15468/dl.zk9ekw
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anastrepha ludens (Loew, 1873)",
 "Country is United States of America",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 230 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034318-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630560_d8
title: Additional file 5: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: List of significant genes expressing Carbohydrate Active enzymes (CAZy) and associated genes with same regulation profile. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3630572_d5
title: Additional file 8: Table S6. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Average BMI by genotype for rs12255372 in MESA and WHI Hispanics. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3630572_d6
title: Additional file 11: Table S9. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Evaluation of heterogeneity of SNP effects by sex for top MESA Hispanic and African American SNPs (p
DOI: 10.6084/m9.figshare.c.3630572_d7
title: Additional file 10: Table S8. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Meta-analysis for top candidate SNP in MESA Hispanics, African Americans, and European Americans. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3630596_d1
title: Additional file 3: of Human extraintestinal pathogenic Escherichia coli strains differ in prevalence of virulence factors, phylogroups, and bacteriocin determinants

description: Table S3. Detection of individual bacteriocin determinants in ExPEC and fecal bacteriocin producers within less virulent phylogenetic groups A + B1 compared to more virulent phylogroups B2 + D. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3631511_d2
title: Additional file 2: of Hybrid origin of European Vipers (Vipera magnifica and Vipera orlovi) from the Caucasus determined using genomic scale DNA markers

description: List of samples used with information about species, locality, date of collection, collector, and institution where collections are stored. (XLS 34 kb)
DOI: 10.6084/m9.figshare.c.3631505_d5
title: Additional file 6: Table S3. of Human milk microbiota profiles in relation to birthing method, gestation and infant gender

description: Comparison of relative abundances of different genera detected in milk between preterm and term samples, caesarean and vaginal deliveries, and male and female child. The values reported for “rab.sample.” represents the base 2 logarithm of the relative abundance of a specific genus within a sample. “rab.win..” represents the base 2 logarithm of the median abundance of a specific genus in all samples within a group (i.e. preterm samples or term samples) relative to the geometric mean abundance, which has a value of 0. Thus, positive values are higher than the geometric mean and are thus more abundant than negative values, which are lower than the geometric mean. Significance (p
DOI: 10.6084/m9.figshare.c.3631505_d6
title: Additional file 1: Table S1. of Human milk microbiota profiles in relation to birthing method, gestation and infant gender

description: Summary of clinical data collected from 39 Canadian women. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3632447_d5
title: Additional file 8: Table S8. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: Unique and annotated mouse genes after differential gene expression analysis in four systems. Mapping to MGI genes, human SFARI genes, and FMRP targets. (XLSX 4 mb)
DOI: 10.6084/m9.figshare.c.3632447_d6
title: Additional file 1: Table S1. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: Genes associated with defects in cognitive development: MGI, SFARI, and FMRP targets. (XLSX 111 kb)
DOI: 10.6084/m9.figshare.c.3632474_d1
title: Additional file 1 of A model of the spatial tumour heterogeneity in colorectal adenocarcinoma tissue

description: File textFeat.xsl. Texture feature profiles for phenotypes found in the real data. Phenotypes are obtained based on the Haralick texture features shown in the table. For each feature the mean is shown in the first column and the standard deviation in the second column. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3632447_d7
title: Additional file 2: Table S2. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: Centroid calculation for each cluster in Fig. 1. The distance between clusters is represented as a difference of absolute values on the PC1 and PC2 axes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3632447_d8
title: Additional file 5: Table S5. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: Selected over-represented KEGG pathways with core differentially expressed genes in Fmr1KO that made a pathway significant. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3632477_d1
title: Additional file 4: Table S5. of Identification of therapeutic targets applicable to clinical strategies in ovarian cancer

description: Candidate shRNAs identified in Ovcar3. (XLS 55Â kb)
DOI: 10.6084/m9.figshare.c.3632447_d9
title: Additional file 13: Table S13. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: Significance of overlap for murine differentially expressed genes (up + down) and genes represented in a specific cluster in human development. Fisherâ  s exact test was used to calculate the statistics. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3632447_d10
title: Additional file 3: Table S3. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: List of significant differential gene expressed in four systems. (XLSX 1 mb)
DOI: 10.6084/m9.figshare.c.3632486_d1
title: Additional file 2: Table S1. of Major differential gene regulation in Coxiella burnetii between in vivo and in vitro cultivation models

description: List of genes differentially regulated in vivo and cell-free culture with respect to cell culture in vitro model of 602 strain, after passing statistical significance filter and showing more than two fold change in expression. All the genes are arranged based on COG functions. A positive value indicates that the gene is up-regulated, a negative value indicates that the gene is down-regulated and â   indicates no difference compared to cell culture in gene regulation under the respective condition. (XLSX 204Â kb)
DOI: 10.6084/m9.figshare.c.3633467_d2
title: Additional file 2 of Geographic variation in the intended choice of adjuvant treatments for women diagnosed with screen-detected breast cancer in Queensland

description: Supplementary Figures. (ZIP 28672 kb)
DOI: 10.6084/m9.figshare.c.3633470_d2
title: Additional file 9: Tree S13. of Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)

description: Scarabaeinae ML tree of dataset DT3 using at least 5 genes (including 18Â s, 28sd2, 28sd3, CAD, 16Â s, Tp1, COI, CAD). (TREE 5 kb)
DOI: 10.6084/m9.figshare.c.3633455_d5
title: MOESM5 of Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii

description: Additional file 5: Table S4. List of predicted genes with ρ &gt; 1. List of transcripts downregulated during N starvation predicted to result in higher TAG to biomass ratio upon gene knockdown. For each gene, we present the computed ρ value, the co-regulated module membership, the time of module downregulation and the predicted TR(s) regulating such module(s).
DOI: 10.6084/m9.figshare.c.3633470_d3
title: Additional file 19: Tree S9. of Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)

description: POY Tree, estimated using parameter scheme 221 (see Methods section). (TRE 12 kb)
DOI: 10.6084/m9.figshare.c.3633455_d6
title: MOESM3 of Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii

description: Additional file 3: Table S3. List of the TRs predicted to orchestrate the transcriptional response during N starvation. Seventeen differentially expressed TRs during N starvation with a predicted significant influence on at least one transcriptional module. TR annotation (locus name, gene name and description), first time point of differential expression, predicted influenced modules and the enriched functions of those modules are indicated. Numbers in parenthesis indicate the number of network-predicted metabolic targets included within each module.
DOI: 10.6084/m9.figshare.c.3633470_d4
title: Additional file 10: Tree S1. of Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)

description: Scarabaeinae ML tree of dataset ALL. (TREE 37 kb)
DOI: 10.6084/m9.figshare.c.3633470_d6
title: Additional file 16: Tree S6. of Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)

description: POY Tree, estimated using parameter scheme 111 (see Methods section). (TRE 12 kb)
DOI: 10.6084/m9.figshare.c.3633476_d4
title: Additional file 2: of Genotypic and phenotypic analyses of a Pseudomonas aeruginosa chronic bronchiectasis isolate reveal differences from cystic fibrosis and laboratory strains

description: (FA 2008Â kb)
DOI: 10.15468/dl.8hdcu5
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anoplophora chinensis (Forster, 1771)",
 "Country is Italy",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034319-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3635096_d4
title: Additional file 5: Table S8. of Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula

description: Proteomic data for Medicago truncatula seed peptides. Raw analysis of peptides matching from Maldi-Tof analyses, previously published by our group [17, 18]. Reanalysis using the Mtr genome V4 assembly. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3635096_d6
title: Additional file 1: Table S2. of Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula

description: PA1 genes identified in the Medicago truncatula genome and features of the deduced proteins. A cluster of tandem duplication repeats is indicated by a vertical line in front of the gene names. AA, number of amino acids; MW, molecular mass in Dalton; pI, isoelectric point; SignalP 4.1 was used to predict the cleaving site of signal peptide; a EMBL ID of Pisum sativum; http://web.expasy.org/compute_pi/ was used to determine the pi and MW values; In the absence of signal peptide cutoff prediction, the complete sequence is shown in Additional file 1: Table S1; ND indicates not determined. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3635096_d7
title: Additional file 6: Table S1. of Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula

description: Legume species analyzed. Legume species selection data. Genomes with high quality full genomes used for phylogenetic analysis, and additional genomic data sources. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.c.3635096_d8
title: Additional file 4: Table S4. of Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula

description: Medicago truncatula tissue gene expression data. This data set was based on expression data from the TIGR gene indices. Others are defined in Methods. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3635108_d1
title: Additional file 2: of Modeling central metabolism and energy biosynthesis across microbial life

description: Supplemental data table associated with this study. There are twelve data tabs included in this table. Description for each data tab is at the end of â  Additional file 1â   document. (XLSX 2418 kb)
DOI: 10.15468/dl.kfq3mj
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Euphorbia stellata Willd."
 ]
}

 The dataset includes 134 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034320-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3636128_d1
title: Additional file 1: of Insights into the segmental identity of post-oral commissures and pharyngeal nerves in Onychophora based on retrograde fills

description: Scenario on the evolution of the arthropod brain. Animation, swf file. Anterior is up. The compound brain of arthropods (sensu Richter et al. [5]) most likely evolved by a fusion of initially separate proto-, deuto- and tritocerebral ganglia. Note that the tripartite brain of arthropods alternatively might have evolved several times independently, as some groups, including branchiopod crustaceans, show a bipartite brain (e.g. [29]).
DOI: 10.6084/m9.figshare.c.3636128_d2
title: Additional file 2: of Insights into the segmental identity of post-oral commissures and pharyngeal nerves in Onychophora based on retrograde fills

description: Scenario on the evolution of the onychophoran brain. Animation, swf file. Anterior is up. The composite brain of onychophorans (sensu Richter et al. [5]) most likely evolved by anteriorly moving somata, which give rise to the deutocerebrum.
DOI: 10.6084/m9.figshare.c.3636131_d2
title: Additional file 2: of The genetic basis of discrete and quantitative colour variation in the polymorphic lizard, Ctenophorus decresii

description: Analysis of expected and observed allele frequencies under proposed models of inheritance. (XLSX 65Â kb)
DOI: 10.15468/dl.bn5yvy
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia stellata subsp. micracantha (Boiss.) Bruyns"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034321-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3637160_d2
title: Additional file 1: Table S1. of Systematic identification of phenotypically enriched loci using a patient network of genomic disorders

description: Collection of DECIPHER patients CNVs, mode of inheritance and phenotypes that have been analyzed from DECIPHER. (XLSX 2440 kb)
DOI: 10.6084/m9.figshare.c.3637160_d3
title: Additional file 3: Table S2. of Systematic identification of phenotypically enriched loci using a patient network of genomic disorders

description: Phenotypically enriched loci (PELs) after the enrichment analysis (hypergeometric test, P-values &lt;0.05.) and case–control analysis (Fisher's exact test, P-values &lt;0.05). (XLSX 269 kb)
DOI: 10.6084/m9.figshare.c.3637160_d4
title: Additional file 5: Table S4. of Systematic identification of phenotypically enriched loci using a patient network of genomic disorders

description: Relationship between Phenotypically enriched loci (PELs) and genomic disorders used from DECIPHER. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3637160_d5
title: Additional file 4: Table S3. of Systematic identification of phenotypically enriched loci using a patient network of genomic disorders

description: Relationship between Phenotypically enriched loci (PELs) and genomic disorders used from ClinVar, OMIM phenotypes caused by likely pathogenic and pathogenic CNVs from ClinVar. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.c.3637163_d2
title: Additional file 2: Table S1. of The incidence, clearance and persistence of non-cervical human papillomavirus infections: a systematic review of the literature

description: Summary of HPV testing conducted in 38 articles included in the review. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3637172_d1
title: Additional file 11: Table S4. of Graded gene expression changes determine phenotype severity in mouse models of CRX-associated retinopathies

description: Compiled ordered lists of heatmap data presented in the manuscript. (XLSX 148 kb)