cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3636377_d4.v1
title: Additional file 1: of A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle

description: Annotation of variants compatible with recessive inheritance. Description: The functional consequences of 702 sequence variants compatible with recessive inheritance of epidermolysis bullosa were obtained from Ensembl using the Variant Effect Predictor tool. (TXT 383 kb)
DOI: 10.6084/m9.figshare.c.3636377_d5.v1
title: Additional file 4: of A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle

description: Haplotypes for 43 VWD animals. Description: Haplotype phases that were estimated using 1009 SNPs on bovine chromosome 22 for two calves with EB, 14 parents of affected calves and 27 control animals of the VWD population. (TXT 86 kb)
DOI: 10.6084/m9.figshare.c.3636377_d6.v1
title: Additional file 3: of A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle

description: Phenotype data for 43 VWD animals. Description: Phenotypes for epidermolysis bullosa in two affected calves, 14 parents and 27 control animals were coded as 2, 1 and 0, respectively. (TXT 484 bytes)
DOI: 10.6084/m9.figshare.c.3636389_d1.v1
title: Additional file 1: of Newly discovered population of Aedes japonicus japonicus (Diptera: Culicidae) in Upper Bavaria, Germany, and Salzburg, Austria, is closely related to the Austrian/Slovenian bush mosquito population

description: Pairwise population matrix of Neiâ  s genetic distances. The lower the values, the closer the genetic relatedness between the respective populations. (XLSX 9 kb)
DOI: 10.15468/dl.um4zy8
title: Occurrence Download

description: A dataset containing 60364 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Nycticorax nycticorax (Linnaeus, 1758)"
 ]
}

 The dataset includes 60364 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037895-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3636392_d2.v1
title: Additional file 7: Table S5. of The transposable element environment of human genes is associated with histone and expression changes in cancer

description: GO function of down- and up-regulated genes between normal and cancer condition. (XLSX 870 kb)
DOI: 10.17863/cam.111125
title: Dataset for "Solar-driven Methanogenesis through Microbial Ecosystem Engineering on Carbon Nitride"

description: The dataset contains raw data supporting the article ‘Solar-driven Methanogenesis through Microbial Ecosystem Engineering on Carbon Nitride’. This work demonstrates a cooperative interaction between two microbes Geobacter sulfurreducens KN400 and Methanosarcina barkeri via direct interspecies electron transfer (DIET) when assembled on a photosensitiser carbon nitride to develop a semi-biological photocatalyst system. It introduces an ecosystem engineering strategy in photocatalysis to drive sunlight-driven sustainable chemical synthesis from greenhouse gas carbon dioxide. The dataset is divided into five key parts: i) Biohybrid Assembly: Contains schematic representation of the novel biohybrid system, ii) Electrochemistry: Electrochemical characterisation of the biohybrid assembly, iii) Materials Characterisation: Physical characterisation of each synthetic and biological component of the biohybrid assembly, iv) Photocatalysis: Photocatalytic performance of the biohybrid system under sunlight irradiation, and v) Spectroscopy: UV-Visible spectroscopic characterisation, and isotopic labelling experiments using proton NMR spectroscopy. For more details about experimental procedure, instrumentation, and data collection, see the manuscript.
DOI: 10.6084/m9.figshare.c.3636401_d1.v1
title: Additional file 1: of Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution

description: Supplementary tables. (ZIP 20649 kb)
DOI: 10.17863/cam.59836
title: Dataset "The experiences of those who support researchers struggling with their mental health"

description: This dataset was obtained through a research project set up as a collaboration between the open life sciences journal eLife, and Dr Lucy Cheke at the University of Cambridge. It consists of a survey capturing the experiences of individuals in the academic environment who provide support to researchers struggling with their mental health. The survey was created in collaboration with and reviewed by academics and university officials before being released. It received ethical approval from the University of Cambridge Psychology department (2018-19/35), and was created on the Survey Monkey platform. It was open between the 23rd October 2019 and 05th January 2020, but only actively advertised until early December 2019. Recruitment took place through eLife’s social media channels (Twitter, Facebook, LinkedIn); eLife’s newsletters to authors and early career community (voluntary subscriptions); directly emailing corresponding authors who have published with eLife; and by contacting groups of interest and institutions that may be willing to share the survey amongst their networks (e.g. New PI Slack, Mid Career PI Slack, Women in Academia Support Network, SMaRteN, Graduate and Postdoc unions in the US and the UK). Certain tweets advertising the survey were boosted (paid promotion) to reach an academic audience, in particular early career researchers. The survey did not require identifiable information from the respondents, such as email addresses, institutions etc. However, it comprised a number of open questions where respondents could share their thoughts and experiences. As the data are to be released openly, individuals who did not consent to their open answers being made public have had their open answers removed from the public dataset. In addition, answers to open questions that could have allowed individuals or institutions to be identified were redacted.
DOI: 10.17863/cam.34176
title: Research data supporting "Gene to Diagnostic: Self immobilizing protein for silica microparticle biosensor, modelled with sarcosine oxidase"

description: Raw analytical data supporting manuscript, including fluorescent data, laser scattering, protein sequences, and raw data belonging to the graphs in the publication. Abstract of manuscript: A rational design approach is proposed for a multifunctional enzyme reagent for point-of-care diagnostics. The biomaterial reduces downstream isolation steps and eliminates immobilization coupling chemicals for integration in a diagnostic platform. Fusion con-structs combined the central functional assay protein (e.g. monomeric sarcosine oxidase, mSOx, horseradish peroxidase, HRP), a visualizing protein (e.g. mCherry) and an in-built immobilization peptide (e.g. R5). Monitoring protein expression in E.coli was facilitated by following the increase in mCherry fluorescence, which could be matched to a color card, indicating when good protein expression has occurred. The R5 peptide (SSKKSGSYSGSKGSKRRIL) provided inbuilt affinity for silica and an immobilization capability for a silica based diagnostic, without requiring additional chemical coupling reagents. Silica particles extracted from beach sand were used to collect protein from crude protein extract with 85-95% selective uptake. The silica immobilized R5 pro-teins were stable for more than 2 months at room temperature. The Km for the silica-R52-mCh-mSOx-R5-6H was 16.5±0.9mM (com-pared with 16.5±0.4 mM, 16.3±0.3 mM, and 16.1±0.4 mM for R52-mCh-mSOx-R5-6H, mSOx-R5-6H and mSOx-6H respectively in solution). The use of the “silica-enzymes” in sarcosine and peroxide assays was shown, and a design using particle sedimentation through the sample was examined. Using shadowgraphy and particle image velocimetry the particle trajectory through the sample was mapped and an hourglass design with a narrow waist shown to give good control of particle position. The hourglass biosensor was demonstrated for sarcosine assay in the clinically useful range of 2.5 to 10 µM in both a dynamic and end point measurement regime.
DOI: 10.6084/m9.figshare.c.3636467_d2.v1
title: Additional file 3: Table S3. of Identification of single nucleotide polymorphism markers associated with resistance to bruchids (Callosobruchus spp.) in wild mungbean (Vigna radiata var. sublobata) and cultivated V. radiata through genotyping by sequencing and quantitative trait locus analysis

description: Marker genotypes of families of the mapping populations TC1966 Ă  NM92 and V2802 Ă  NM94 at bruchid resistance loci. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3636467_d4.v1
title: Additional file 1: Table S1. of Identification of single nucleotide polymorphism markers associated with resistance to bruchids (Callosobruchus spp.) in wild mungbean (Vigna radiata var. sublobata) and cultivated V. radiata through genotyping by sequencing and quantitative trait locus analysis

description: List of all SNPs that are homozygous in the mapping parents and map to chromosome 1â  11 of the mungbean reference sequence (Kang YJ, Kim SK, Kim MY, Lestari P, Kim KH, Ha BK, et al. Genome sequence of mungbean and insights into evolution within Vigna species. Nat Commun. 2014; doi: 10.1038/ncomms6443 ). (XLSX 343Â kb)
DOI: 10.17863/cam.106374
title: Research data supporting 'Activation of the proton-sensing GPCR, GPR65 on fibroblast-like synoviocytes contributes to inflammatory joint pain.'

description: Data underlying the figures from the associated paper "Activation of the proton-sensing GPCR, GPR65 on fibroblast-like synoviocytes contributes to inflammatory joint pain". Each .csv file contains the data constituting the Figures and Tables referenced in the file name. An explanation of how data under each column was collected/analysed can be found in the header_info.csv.
DOI: 10.17863/cam.92858
title: Research Data Supporting "Microstructural Stability and Properties of New Nickel-Base Superalloys with Varying Aluminium : Niobium Ratio"

description: The deposited data relate to the figures contained within the published manuscript. Data are provided for the three alloys studied, which are characterised by a varying Al:Nb ratio across the series. These data include scanning electron microscopy images (.tiff files) obtained from the alloys in all of the studied heat treatment conditions, in addition to laboratory X-ray diffraction data (.txt files). Transmission electron microscopy images and diffraction patterns are provided with a range of standard image formats (.tiff .jpg and .png). Hardness data are given as comma separated variable (.csv) files. Electron back scattered diffraction (EBSD) data are provided as channel text files (.ctf) alongside band contrast images (.tiff). Differential scanning calorimetry (DSC) data are provided as text files (.txt).
DOI: 10.17863/cam.49827
title: Research Data Supporting: The impact of Natural Flood Management on the performance of surface drainage systems: a case study in the Calder Valley

description: This repository contains (i) an exemplar Matlab script detailling the use of the HEC-RAS API controller (to aid multiple runs of the underlying hydraulic solver); (ii) an exemplar R script detailing the use of the CRAN version of Dynamic TOPMODEL; (iii) supplementary information on the calibration of the model as well as the sensitivity of the Natural Flood Management (NFM) representation; (iv) the comparative river output design hydrographs (with and without NFM) and (v) a comparison of the observed and modelled calibration period. The underlying raw data for this paper comes from publicly accessible datasets.
DOI: 10.6084/m9.figshare.c.3636566_d4.v1
title: Additional file 3: Table S2. of Classification of low quality cells from single-cell RNA-seq data

description: P values of two-sided paired t-test comparing expression and noise level, between each type of low quality cell for different GO-terms (training mES dataset). (XLSX 2641Â kb)
DOI: 10.6084/m9.figshare.c.3636566_d5.v1
title: Additional file 2: Table S1. of Classification of low quality cells from single-cell RNA-seq data

description: Quality annotation of cells for all tested datasets. (XLSX 146Â kb)
DOI: 10.17863/cam.85749
title: Supporting data for 'Fermi surface and mass renormalization in the iron-based superconductor YFe2Ge2'

description: This deposit holds all the data underlying the figures shown in the linked publication. Please see readme file for details
DOI: 10.6084/m9.figshare.c.3636566_d7.v1
title: Additional file 4: Table S3. of Classification of low quality cells from single-cell RNA-seq data

description: P values of t-test comparing features between each type of low quality and high quality cells (training mES dataset). (TXT 1Â kb)
DOI: 10.6084/m9.figshare.c.3636581_d1.v1
title: MOESM1 of Active acoustic tracking suggests that soft sediment fishes can show site attachment: a preliminary assessment of the movement patterns of the blue-spotted flathead (Platycephalus caeruleopunctatus)

description: Additional file 1: Table S1. Detailed quantitative summary of movement pattern metrics including final h values.
DOI: 10.6084/m9.figshare.c.3636590_d1.v1
title: Additional file 10: Table S5. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

description: A list of small secreted proteins (SSPs) of P. brassicae that contains potential RXLR motifs. Names displayed in bold are SSPs where the position of RXLR and EER motifs match the model described by Bhattacharjee et al. [59] and Win et al. [60]. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3636590_d5.v1
title: Additional file 9: Table S4. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

description: P. brassicae pathotype 3 predicted secreted proteins. (XLSX 18Â kb)
DOI: 10.17863/cam.78715
title: Human embryonic genome activation initiates at the one-cell stage (Supplementary Tables)

description: Tables showing differentially expressed genes in Human 2PN embryos vs MII Oocytes
DOI: 10.6084/m9.figshare.c.3636611_d1.v1
title: Additional file 7: Spreadsheet S2. of When the brain goes diving: transcriptome analysis reveals a reduced aerobic energy metabolism and increased stress proteins in the seal brain

description: Gene expression in the mammalian brain. The RPKM values have been calculated for cortices of mouse, pig, dog, cow, sheep, ferret and hooded seal, in the brain of minke whale and the cerebellum of bowhead whale. n.a., not available; n.d., not detected. (XLSX 760 kb)
DOI: 10.17863/cam.9695
title: Research Data Supporting "Horsetail Matching: A Flexible Approach to Optimization Under Uncertainty"

description: This data comprises python source code, along with scripts that illustrate how to use this source code to recreate results in the publication. Further details are given in the README.txt file.
DOI: 10.6084/m9.figshare.c.3636611_d4.v1
title: Additional file 3: Spreadsheet S1. of When the brain goes diving: transcriptome analysis reveals a reduced aerobic energy metabolism and increased stress proteins in the seal brain

description: Comparative gene expression in the seal and ferret brain. Gene expression (RPKM values) in the visual cortex of the hooded seal and the ferret. The cut-off was set to RPKM &gt;5 in both species. (XLSX 406 kb)
DOI: 10.6084/m9.figshare.c.3636623_d1.v1
title: Additional file 11 of Phylogenetic distribution of plant snoRNA families

description: snoRNAs with coordinates. Complete archive of all fasta files of annotated snoRNAs is provided. The header of each sequence follows convention of the snoStrip pipeline and includes genome coordinates, detailes about the successful query during homology search and annotation of the characteristic box motifs. (ZIP 355 kb)
DOI: 10.6084/m9.figshare.c.3636623_d2.v1
title: Additional file 8 of Phylogenetic distribution of plant snoRNA families

description: Nomenclature. A complete table (.csv-formatted) of family names and their species-specific synonyms is provided. (CSV 209 kb)
DOI: 10.17863/cam.41182
title: Research data supporting 'Cleaning insoluble viscoplastic soil layers using static and moving coherent impinging water jets'

description: The data set contains the data plotted in the figures presented in the paper of the same title published in Chemical Engineering Science. Details are provided in the Read Me text file.
DOI: 10.6084/m9.figshare.c.3636623_d3.v1
title: Additional file 6 of Phylogenetic distribution of plant snoRNA families

description: ePoPE output details of box C/D snoRNAs. Detailed analysis of the predicted box C/D snoRNAs, lost genes, and lost families as outputted by ePoPE. (ODT 176 kb)
DOI: 10.6084/m9.figshare.c.3636623_d4.v1
title: Additional file 7 of Phylogenetic distribution of plant snoRNA families

description: ePoPE output details of box H/ACA snoRNAs. Detailed analysis of the predicted box H/ACA snoRNAs, lost genes, and lost families as outputted by ePoPE. (ODT 16.9 kb)
DOI: 10.6084/m9.figshare.c.3636623_d6.v1
title: Additional file 10 of Phylogenetic distribution of plant snoRNA families

description: List of Genomes and Accession Numbers. The list of all genomes with the accession numbers are added here for all the plants including red algae (.csv format). (CSV 284 kb)
DOI: 10.6084/m9.figshare.c.3636623_d5.v1
title: Additional file 3 of Phylogenetic distribution of plant snoRNA families

description: Alignments (in.aln format) representing co-evolution of conserved snoRNA-rRNA target interactions. (ZIP 109 kb)
DOI: 10.6084/m9.figshare.c.3636623_d7.v1
title: Additional file 4 of Phylogenetic distribution of plant snoRNA families

description: SnoRNA clusters. The folder includes figures (in.eps format) of all identified additional snoRNA clusters. (ZIP 4505 kb)
DOI: 10.6084/m9.figshare.c.3636623_d9.v1
title: Additional file 1 of Phylogenetic distribution of plant snoRNA families

description: Relevant to box C/D snoRNAs heatmap. The.csv files contain the box C/D snoRNA families of the plant species that are represented in the heatmaps. (CSV 601 kb)
DOI: 10.25810/fq7x-q521.60
title: Middle Eastern Newspaper Coverage of Climate Change or Global Warming, 2004-2024 - November 2024

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.c.3636623_d8.v1
title: Additional file 5 of Phylogenetic distribution of plant snoRNA families

description: Targets. Complete archive of the rRNA and snRNA targets is provided. These are.txt files, which include RNAsnoop and Plexy output. (ZIP 139 kb)
DOI: 10.6084/m9.figshare.c.3636623_d10.v1
title: Additional file 2 of Phylogenetic distribution of plant snoRNA families

description: Relevant to box H/ACA snoRNAs heatmap. The.csv files contain the box H/ACA snoRNA families of the plant species that are represented in the heatmaps. (CSV 211 kb)
DOI: 10.6084/m9.figshare.c.3636623_d11.v1
title: Additional file 9 of Phylogenetic distribution of plant snoRNA families

description: Alignments. Complete archive of all snoRNA family alignments (in.stk stockholm format). (ZIP 194 kb)
DOI: 10.6084/m9.figshare.c.3636671_d10.v1
title: Additional file 9: Table S3. of Transformation of enriched mammary cell populations with polyomavirus middle T antigen influences tumor subtype and metastatic potential

description: All differentially expressed genes in the luminal CD133â   tumor cluster compared with the mixed tumor cluster. Group 1 is the mixed tumor cluster, group 2 is the luminal CD133â   tumor cluster. A t test was performed on Benjaminiâ  Hochberg-corrected, log-transformed data. Table includes gene name, ratio, p value, and direction. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.c.3636671_d12.v1
title: Additional file 8: Table S2. of Transformation of enriched mammary cell populations with polyomavirus middle T antigen influences tumor subtype and metastatic potential

description: Top 100 unique differentially expressed genes in the luminal CD133â   tumor cluster compared with the mixed tumor cluster. Group 1 is the mixed tumor cluster, and group 2 is the luminal CD133â   tumor cluster. A t test was performed on Benjaminiâ  Hochberg-corrected, log-transformed data. Table includes gene name, ratio, p value, and direction. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3636677_d1.v1
title: MOESM1 of Whole-genome resequencing of Xishuangbanna fighting chicken to identify signatures of selection

description: Additional file 1: Table S1. Summary of the downloaded chicken genome re-sequencing data. Description: The table provides sequencing depth and accession numbers from the downloaded chicken genome.
DOI: 10.6084/m9.figshare.c.3636677_d3.v1
title: MOESM5 of Whole-genome resequencing of Xishuangbanna fighting chicken to identify signatures of selection

description: Additional file 5: Table S4. GO analysis for all genes under selection in YNLC. The table provides the significantly overrepresented gene ontology (GO) terms among putatively selected genes in YNLC.
DOI: 10.6084/m9.figshare.c.3636677_d4.v1
title: MOESM2 of Whole-genome resequencing of Xishuangbanna fighting chicken to identify signatures of selection

description: Additional file 2: Table S2. Summary and annotation of SNPs in Xishuangbanna fighting chicken (YNLC) and Red Jungle Fowl (RJF).
DOI: 10.6084/m9.figshare.c.3636677_d6.v1
title: MOESM6 of Whole-genome resequencing of Xishuangbanna fighting chicken to identify signatures of selection

description: Additional file 6: Table S5. KEGG analysis for all genes under selection in YNLC. The table provides the significantly enriched KEGG pathways among putatively selected genes in YNLC.
DOI: 10.6084/m9.figshare.c.3636677_d5.v1
title: MOESM3 of Whole-genome resequencing of Xishuangbanna fighting chicken to identify signatures of selection

description: Additional file 3: Table S3. Putatively selected genes (top 5Â % level of $${\text{ZH}}_{\text{p}}$$ ZH p and $${\text{Z}}F_{\text{ST}}$$ Z F ST values) in the Xishuangbanna fighting chicken (YNLC).
DOI: 10.6084/m9.figshare.c.3636689_d2.v1
title: Additional file 7 of Drug combinatorics and side effect estimation on the signed human drug-target network

description: Text file containing all drug pairs having side effect scores b i (j)â Ľ0.5 but 0
DOI: 10.6084/m9.figshare.c.3636689_d1.v1
title: Additional file 2 of Drug combinatorics and side effect estimation on the signed human drug-target network

description: Text file containing all drug pairs having synergistic scores a i (j)≥0.5 and a j (i)≥0.5. (TXT 1903 kb)
DOI: 10.6084/m9.figshare.c.3636689_d3.v1
title: Additional file 6 of Drug combinatorics and side effect estimation on the signed human drug-target network

description: Text file containing all drug pairs having side effect scores b i (j)≥0.5 and b j (i)≥0.5. (TXT 19 kb)
DOI: 10.6084/m9.figshare.c.3636689_d5.v1
title: Additional file 4 of Drug combinatorics and side effect estimation on the signed human drug-target network

description: Text file containing all drug pairs having synergistic scores a i (j)=a j (i)=0. (TXT 40 kb)
DOI: 10.6084/m9.figshare.c.3636689_d4.v1
title: Additional file 10 of Drug combinatorics and side effect estimation on the signed human drug-target network

description: Drugbank_Overlap_drugpairs_with_DCDB. Text file containing all drug pairs overlapping with the experimental drug combination of the database DCDB. (TXT 8 kb)
DOI: 10.6084/m9.figshare.c.3636689_d6.v1
title: Additional file 8 of Drug combinatorics and side effect estimation on the signed human drug-target network

description: Text file containing all drug pairs having side effect scores b i (j)=b j (i)=0. (TXT 44 kb)