cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7896317
title: Food4Me - personalised nutrition European 9 countries public acceptance survey - Dataset from WP2

description: This data set consists of a large cross-country survey conducted for the EU funded project Food4Me in 2013. It contains determinants for consumer acceptance and intention to use of personalized nutrition advices based on different levels of specificity and personality of data –self-reported intake, blood analysis and DNA based analysis of optimal nutrition patterns. Data are provided in SPSS and interoperable .CSV format. Surveys and metainformation are added in interoperable .RTF format. The underlying survey is present in 8 languages English, German, Spanish, Norwegian, Dutch, Portuguese, Greek and Polish. Used scales are sourced to the originals in the description file.
DOI: 10.6084/m9.figshare.22761347
title: METACOGNITION AWARENESS ASSESSMENT.xlsx

description: participants data
DOI: 10.5066/p9aywbxu
title: Supporting Datasets for Hydrogeological Characterization of Area B, Fort Detrick, Maryland

description: This dataset includes raw hydrologic data (streamflow data, groundwater level data, precipitation data) and geochemical data (geochemical results, fluorometric monitoring results) collected from January 1st, 2000 to December 31st, 2020 This dataset also includes interpreted results described in a U.S. Geological Survey Scientific Investigation Report (Goodling and others, 2023). This report describes how the hydrologic data were analyzed to calculate a water budget and how the geochemical data were interpreted. Goodling, P.J., Fleming, B.J., Solder, J., Soroka, A., and Raffensperger, J., 2023, Hydrogeologic characterization of Area B, Fort Detrick, Maryland: U.S. Geological Survey Scientific Investigations Report 2022–5054, 128 p., https://doi.org/ 10.3133/ sir20225054.
DOI: 10.5066/p9gttx8q
title: Soil-Water-Balance (SWB) model archive used to simulate water budget components in Pennsylvania and Maryland, 2000-2020

description: This model archive documents the Soil-Water-Balance (SWB) model used to simulate potential recharge for portions of Pennsylvania and Maryland from 2000 to 2021. The Pennsylvania and Maryland SWB model was used to create output at a 250 meter grid scale. Model parameters were adjusted using baseflow estimates from 36 reference watersheds varying in area from 0.37 to 817 square miles. The simulations were used to create 21-year grids of annual potential recharge and evapotranspiration, and the sensitivity of the model to parameter adjustments. The model archive includes all the files used in the sensitivity model runs, which are described in the accompanying Scientific Investigations Report 2022-5054. The directory structure of the model archive contains all the files needed to document and run the model. The directories in the archive are presented each as a separate .zip file and include an "ancillary" directory, a "bin" directory, a "georef" directory, a "model directory, an "output" directory, and a "source" directory. There is a README file describing all the files and directories in the archive and information on how to run the model.
DOI: 10.6084/m9.figshare.21674387
title: Data table 1 - Demographic characteristics of the cohort

description: Objectives: Inborn error of immunity (IEI) comprises a broad group of inherited immunological disorders that usually display an overlap in many clinical manifestations challenging their diagnosis. The identification of disease-causing variants comprises the gold-standard approach to ascertain IEI diagnosis. The efforts to increase the availability of clinically relevant genomic data for these disorders constitute an important improvement in the study of rare genetic disorders. This work aims to make available whole-exome sequencing (WES) data of Brazilian patients' suspicion of IEI without a genetic diagnosis. We foresee a broad use of this dataset by the scientific community in order to provide a more accurate diagnosis of IEI disorders. Data description: Twenty singleton unrelated patients treated at four different hospitals in the state of Rio de Janeiro, Brazil were enrolled in our study. Half of the patients were male with mean ages of 9±3, while females were 12±10 years old. The WES was performed in the Illumina NextSeq platform with at least 90% of sequenced bases with a minimum of 30 reads depth. Each sample had an average of 20,274 variants, comprising 116 classified as rare pathogenic or likely pathogenic according to ACMG guidelines. The genotype-phenotype association was impaired by the lack of detailed clinical and laboratory information, besides the unavailability of molecular and functional studies which, comprise the limitations of this study. Overall, the access to clinical exome sequencing data is limited, challenging exploratory analyses and the understanding of genetic mechanisms underlying disorders. Therefore, by making these data available, we aim to increase the number of WES data from Brazilian samples despite contributing to the study of monogenic IEI-disorders.
DOI: 10.6084/m9.figshare.21674387.v4
title: Data table 1 - Demographic characteristics of the cohort

description: Objectives: Inborn error of immunity (IEI) comprises a broad group of inherited immunological disorders that usually display an overlap in many clinical manifestations challenging their diagnosis. The identification of disease-causing variants comprises the gold-standard approach to ascertain IEI diagnosis. The efforts to increase the availability of clinically relevant genomic data for these disorders constitute an important improvement in the study of rare genetic disorders. This work aims to make available whole-exome sequencing (WES) data of Brazilian patients' suspicion of IEI without a genetic diagnosis. We foresee a broad use of this dataset by the scientific community in order to provide a more accurate diagnosis of IEI disorders. Data description: Twenty singleton unrelated patients treated at four different hospitals in the state of Rio de Janeiro, Brazil were enrolled in our study. Half of the patients were male with mean ages of 9±3, while females were 12±10 years old. The WES was performed in the Illumina NextSeq platform with at least 90% of sequenced bases with a minimum of 30 reads depth. Each sample had an average of 20,274 variants, comprising 116 classified as rare pathogenic or likely pathogenic according to ACMG guidelines. The genotype-phenotype association was impaired by the lack of detailed clinical and laboratory information, besides the unavailability of molecular and functional studies which, comprise the limitations of this study. Overall, the access to clinical exome sequencing data is limited, challenging exploratory analyses and the understanding of genetic mechanisms underlying disorders. Therefore, by making these data available, we aim to increase the number of WES data from Brazilian samples despite contributing to the study of monogenic IEI-disorders.
DOI: 10.35078/iynpkz
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Diamantina | Município: Augusto de Lima

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.5281/zenodo.7896022
title: Synchronized Planarity Test Instances

description: The dataset used for evaluating the C++ Implementation of the quadratic-time Synchronized Planarity Algorithm presented at ESA'21.
DOI: 10.5281/zenodo.7896021
title: Synchronized Planarity Test Instances

description: The dataset used for evaluating the C++ Implementation of the quadratic-time Synchronized Planarity Algorithm presented at ESA'21.
DOI: 10.17028/rd.lboro.22761338
title: Supplementary information files for Life course socioeconomic position and DNA methylation age acceleration in mid-life

description: Supplementary files for article Life course socioeconomic position and DNA methylation age acceleration in mid-life Background: Ageing biomarkers can help us better understand how well-established socioeconomic position (SEP) disparities in ageing occur. A promising new set of DNAm methylation (DNAm)-based ageing biomarkers indicate through their age acceleration (AA) measures if biological ageing is slower or faster than chronological ageing. Few studies have investigated the association between SEP and DNAm AA. <br> Methods: We used linear regression to examine the sex-adjusted relationships between childhood social class, adult social class, intergenerational social class change, education and adult household earnings with first (Horvath AA and Hannum AA) and second generation (PhenoAge AA and GrimAge AA) DNAm AA markers using data from the MRC National Survey of Health and Development. <br> Results: In the first-generation biomarkers, there was little evidence of any associations with Horvath AA but associations of childhood social class and income with Hannum AA were observed. Strong associations were seen between greater disadvantage in childhood and adult SEP and greater AA in the second generation biomarkers. For example, those with fathers in an unskilled occupational social class in childhood had 3.6 years greater PhenoAge AA (95% CI 1.8 to 5.4) than those with fathers from a professional social class. Individuals without qualifications had higher AA compared with those with higher education (4.1 years greater GrimAge AA (95% CI 3.1 to 5.0)). <br> Conclusion: Our findings highlight the importance of exposure to social disadvantage in childhood to the biological ageing process. The second generation clocks appear to be more sensitive to the accumulation of social disadvantage across the life course.<strong><br> </strong>
DOI: 10.17028/rd.lboro.22761338.v1
title: Supplementary information files for Life course socioeconomic position and DNA methylation age acceleration in mid-life

description: Supplementary files for article Life course socioeconomic position and DNA methylation age acceleration in mid-life Background: Ageing biomarkers can help us better understand how well-established socioeconomic position (SEP) disparities in ageing occur. A promising new set of DNAm methylation (DNAm)-based ageing biomarkers indicate through their age acceleration (AA) measures if biological ageing is slower or faster than chronological ageing. Few studies have investigated the association between SEP and DNAm AA. <br> Methods: We used linear regression to examine the sex-adjusted relationships between childhood social class, adult social class, intergenerational social class change, education and adult household earnings with first (Horvath AA and Hannum AA) and second generation (PhenoAge AA and GrimAge AA) DNAm AA markers using data from the MRC National Survey of Health and Development. <br> Results: In the first-generation biomarkers, there was little evidence of any associations with Horvath AA but associations of childhood social class and income with Hannum AA were observed. Strong associations were seen between greater disadvantage in childhood and adult SEP and greater AA in the second generation biomarkers. For example, those with fathers in an unskilled occupational social class in childhood had 3.6 years greater PhenoAge AA (95% CI 1.8 to 5.4) than those with fathers from a professional social class. Individuals without qualifications had higher AA compared with those with higher education (4.1 years greater GrimAge AA (95% CI 3.1 to 5.0)). <br> Conclusion: Our findings highlight the importance of exposure to social disadvantage in childhood to the biological ageing process. The second generation clocks appear to be more sensitive to the accumulation of social disadvantage across the life course.<strong><br> </strong>
DOI: 10.5281/zenodo.7672208
title: Files associated with MCD

description: Files associated with MCD manuscript
DOI: 10.5281/zenodo.7895840
title: Files associated with coordination of actin plus-end dynamics paper.

description: Files associated with coordination of actin plus-end dynamics paper.
DOI: 10.5281/zenodo.7672207
title: Files associated with coordination of actin plus-end dynamics paper.

description: Files associated with coordination of actin plus-end dynamics paper.
DOI: 10.6084/m9.figshare.22761386
title: Household Wealth Habitat Model

description: This study analyzed de-identified secondary data from participants who self-identified as African American/Black, was listed as the owner on the deed, was aged 18 years or older, and completed the closing process between January 1, 2014, and December 31, 2021. Using repeated measures of ANOVA statistical analysis, data were examined from 20 Black households from three programmatic collection points: application, program approval, and closing. Statistically significant changes were found in the following primary outcomes: gross monthly income, collections debt, credit scores, and debt-to-income ratio from the time of program application to closing.
DOI: 10.6084/m9.figshare.22761386.v1
title: Household Wealth Habitat Model

description: This study analyzed de-identified secondary data from participants who self-identified as African American/Black, was listed as the owner on the deed, was aged 18 years or older, and completed the closing process between January 1, 2014, and December 31, 2021. Using repeated measures of ANOVA statistical analysis, data were examined from 20 Black households from three programmatic collection points: application, program approval, and closing. Statistically significant changes were found in the following primary outcomes: gross monthly income, collections debt, credit scores, and debt-to-income ratio from the time of program application to closing.
DOI: 10.2905/9ee32efe-af81-48e4-8ad6-a0db06802e03
title: Cultural gems ontology: Mapping culture and intangible heritage in European cities

description: Cultural gems is a crowdsourced web platform aimed at creating community-led maps as well as a common repository for cultural and creative places across European cities and towns. This dataset is the ontology developed to model the data of Cultural gems, by adopting FAIR (Findable, Accessible, Interoperable, Reusable) principles and following the paradigms of Linked Open Data (LOD).
DOI: 10.5281/zenodo.7890454
title: SILVA 138 SSURef NR99 database formatted for phyloFlash

description: Small-subunit ribosomal RNA reference database from SILVA release 138, formatted for use with phyloFlash (https://github.com/HRGV/phyloFlash) (version &gt;=3.4). phyloFlash is a pipeline for rapid screening and targeted assembly of SSU rRNA sequences from short-read metagenomic or transcriptomic datasets. Please see README.md for more details and license information.
description: {"references": ["10.1128/mSystems.00920-20", "10.1093/nar/gks1219", "10.1093/nar/gkt1209"]}
DOI: 10.5281/zenodo.7890453
title: SILVA 138 SSURef NR99 database formatted for phyloFlash

description: Small-subunit ribosomal RNA reference database from SILVA release 138, formatted for use with phyloFlash (https://github.com/HRGV/phyloFlash) (version &gt;=3.4). phyloFlash is a pipeline for rapid screening and targeted assembly of SSU rRNA sequences from short-read metagenomic or transcriptomic datasets. Please see README.md for more details and license information.
description: {"references": ["10.1128/mSystems.00920-20", "10.1093/nar/gks1219", "10.1093/nar/gkt1209"]}
DOI: 10.17031/6453b49715626
title: 2007 Natural England Lundy Survey of Leptopsammia pruvoti populations

description: This report details the findings of a survey of the sunset cup coral Leptopsammia pruvoti population at Lundy. Fieldwork was carried out by a 5-man dive team over three days from 4th to 6th September 2007. The dataset contains counts of sunset cup corals around Lundy taken by divers and analysis of underwater photographs. The data in the report contains digital photographs, species lists and abundance as well as accurate site locations where the samples were collected.
DOI: 10.21227/bw4t-g724
title: Dataset for Paper: Tactile Perception of Coated Smooth Surfaces

description: Although surface coating is commonly utilized in many industries for improving the aesthetics and functionality of the end product, our tactile perception of coated surfaces has not been investigated in depth yet. In fact, there are only a few studies investigating the effect of coating material on our tactile perception of extremely smooth surfaces having roughness amplitudes in the order of a few nanometers. Moreover, the current literature needs more studies linking the physical measurements performed on these surfaces to our tactile perception in order to further understand the adhesive contact mechanism leading to our percept. In this study, we first perform 2AFC experiments with 8 participants to quantify their tactile discrimination ability of 5 smooth glass surfaces coated with 3 different materials. We then measure the coefficient of friction between human finger and those 5 surfaces via a custom-made tribometer and their surface energies via Sessile drop test performed with 4 different liquids. The results of our psychophysical experiments and the physical measurements show that coating material has a strong influence on our tactile perception and human finger is capable of detecting differences in surface chemistry due to, possibly, molecular interactions.
DOI: 10.35078/zwoemq
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Diamantina | Município: Betim

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.25345/c5m03z72x
title: MassIVE MSV000091856 - IEX fractionated proteome of pig tracheal cilia extract
title: Cilia from two fresh pig tracheas (Sus scrofa) were removed by calcium shock and proteins extracted in buffer containing 1% NP40. Extract was diluted to reduce salts and fractionated by HPLC on a mixed bed ion exchange column. Fractions were reduced/alkylated and digested with trypsin for analysis by LC-MS/MS on an orbitrap fusion Lumos using a 75 minute top speed DDA method and HCD.
DOI: 10.5281/zenodo.7896285
title: hermissenda_crassicornis_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7896284
title: hermissenda_crassicornis_spades_01.fasta.gz

description: .
DOI: 10.17031/6453b49715626.1
title: 2007 Natural England Lundy Survey of Leptopsammia pruvoti populations
title: 2007 Sea-Scope, Lundy. Survey of Leptopsammia pruvoti populations

description: This report details the findings of a survey of the sunset cup coral Leptopsammia pruvoti population at Lundy. Fieldwork was carried out by a 5-man dive team over three days from 4th to 6th September 2007. The dataset contains counts of sunset cup corals around Lundy taken by divers and analysis of underwater photographs. The data in the report contains digital photographs, species lists and abundance as well as accurate site locations where the samples were collected.
DOI: 10.6084/m9.figshare.22761437
title: gage_data.csv

description: Data accompanying Motivations and expectations of parents seeking genetic testing for their children with ocular genetic disease <br> Gage, Wetherill, Anderson, Conboy, Haider <br> Opthalmic Genetics
DOI: 10.6084/m9.figshare.22761437.v1
title: gage_data.csv

description: Data accompanying Motivations and expectations of parents seeking genetic testing for their children with ocular genetic disease <br> Gage, Wetherill, Anderson, Conboy, Haider <br> Opthalmic Genetics
DOI: 10.35077/add-lag
title: Confocal imaging of developing fly brain labeling 71B05+ PNs and acj6+ PNs: Fly 1

description: This dataset is part of a fly brain imaging experiment describing dendrite targeting of projection neurons at neuronal type-specific resolution across development. Here, we labeled DL1 PNs (71B05+) and adPNs (acj6+) with Halo and GFP, respectively and examined DL1 PN dendrite targeting in the developing fly brain.
description: Fly1_brain_1 and Fly1_brain_2 refer to antennal lobe regions in the left and right hemispheres of the same brain, respectively.
description: Fly1_brain_1 and Fly1_brain_2 refer to antennal lobe regions in the left and right hemispheres of the same brain, respectively. DATASET METADATA: title:'Confocal imaging of developing fly brain labeling 71B05+ PNs and acj6+ PNs: Fly 1', GeneralModality:'cell morphology', Technique:'other', Other:'chemical labeling, immunostaining' SPECIMEN METADATA: LocalID:'Dataset_01_Fly1', Species:'Fruit Fly', NCBITaxonomy:'NCBI:txid7227', Age:'12', Ageunit:'hours after puparium formation', Sex:'Unknown', Genotype:'acj6-T2A-QF2/+; GH146-FLP QUAS-FRT-stop-FRT-mCD8-GFP/UAS-FRT10-stop-FRT10-3xHalo7-CAAX; 71B05-GAL4', OrganName:'Brain', SampleLocalID:'NA', Locations:'Antennal lobe' INSTRUMENT METADATA: MicroscopeType:'Confocal', MicroscopeManufacturerAndModel:'ZEISS LSM 780; LSM 900 with Airyscan 2' IMAGE METADATA: xAxis:'right-to-left', yAxis:'superior-to-inferior', zAxis:'anterior-to-posterior', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'0.25', stepSizeY:'0.25'
DOI: 10.5281/zenodo.7896434
title: Dataset for 'Inland ship emissions and their contribution to NOx and ultrafine particle concentrations at the Rhine'

description: Dataset for ACP manuscript 'Inland ship emissions and their contribution to NOx and ultrafine particle concentrations at the Rhine'. Further explanations on the datasets can be found in the 'README.txt' file. In case of any questions please contact: Philipp Eger (eger@bafg.de), Federal Institute of Hydrology. 1_Timeseries_Worms Description: Time series of measured gaseous and particulate species for station "BRI" in Worms on 10 December 2021. <br> 2_All_ship_peaks_Worms Description: All analyzed ship peaks fulfilling the quality check criteria. <br> 3_Ship_contribution_Worms Description: Mean monthly contribution from shipping based on analyzed peaks. <br> 4_Examples_Worms Description: Particle size distribution of five exemplary peaks (A-E).