cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13139/olcf/3003276
title: High fidelity blade-resolved and actuator line data from a 16 turbine wind farm simulation using ExaWind

description:    This data was generated with the ExaWind code suite (https://github.com/Exawind) as a demonstration of a large, 16 turbine wind farm simulation, calculated using two different levels of fidelity.  The lower level of fidelity approach uses an actuator line approach to represent the turbines, and was simulated with AMR-Wind (https://github.com/Exawind/amr-wind/) as the background flow solver, coupled to OpenFAST (https://github.com/OpenFAST/openfast).  The higher level of fidelity simulation uses a blade-resolved approach, and is done using AMR-Wind, Nalu-Wind (https://github.com/Exawind/nalu-wind), OpenFAST, and TIOGA (https://github.com/Exawind/tioga).  In the blade-resolved simulation, ExaWind couples together a background flow solver, AMR-Wind, and a near-body solver, Nalu-Wind, through an overset technique from the TIOGA application. OpenFAST handles the structural dynamics of the turbine blades and towers, which informs the fluid-structure interaction of the wind turbines with the flow solvers. 

 In the actuator line simulation, a mesh of 295M elements was used for a 5km x 5km domain, and it was simulated using 256 nodes (2048 GPU's) on the Oak Ridge Leadership Computing Facility Frontier supercomputer.  For the blade-resolved simulation, 1.5B element mesh was used in the AMR-Wind background 5km x 5km domain, and 16M elements were used for each turbine in the Nalu-Wind domains, for a total of 1.7B elements.  This was simulated using 384 nodes on Frontier, with each node using 56 cores for Nalu-Wind and 8 GPU cores.  The data in this archive includes the turbine outputs from OpenFAST, 2D sampling planes from AMR-Wind, and full-field solution files from AMR-Wind and Nalu-Wind.
DOI: 10.15468/dl.mwed4y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((146.642 -6.128871, 146.571335 -6.134433, 146.502406 -6.150981, 146.436905 -6.178109, 146.376443 -6.215151, 146.322506 -6.261197, 146.276421 -6.315114, 146.239325 -6.375578, 146.212131 -6.441102, 146.195512 -6.510073, 146.189883 -6.580796, 146.195386 -6.651528, 146.21189 -6.720528, 146.238994 -6.786096, 146.276033 -6.846615, 146.322097 -6.900595, 146.376054 -6.946702, 146.436574 -6.9838, 146.502165 -7.010973, 146.571209 -7.02755, 146.642 -7.033121, 146.712791 -7.02755, 146.781835 -7.010973, 146.847426 -6.9838, 146.907946 -6.946702, 146.961903 -6.900595, 147.007967 -6.846615, 147.045006 -6.786096, 147.07211 -6.720528, 147.088614 -6.651528, 147.094117 -6.580796, 147.088488 -6.510073, 147.071869 -6.441102, 147.044675 -6.375578, 147.007579 -6.315114, 146.961494 -6.261197, 146.907557 -6.215151, 146.847095 -6.178109, 146.781594 -6.150981, 146.712665 -6.134433, 146.642 -6.128871))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044918-251120083545085/datasets/export for details.
DOI: 10.5281/zenodo.15056121
title: CBCT projection images of phantoms

description: This dataset contains projection images of three different cone beam CT acquisitions.



A synthetic CBCT scan of a numerical phantom with bone insets using an X-ray source with a known spectrum.

A synthetic CBCT scan of a water disk with three insets: bone, aluminium and titanium

A synthetic CBCT scan of a numerical head phantom, including scatter

A CBCT scan of a skull using the Hi-Res mode of the Morita 3D Accuitomo 170 device.
DOI: 10.5281/zenodo.17879108
title: CBCT projection images of phantoms

description: This dataset contains projection images of three different cone beam CT acquisitions.



A synthetic CBCT scan of a numerical phantom with bone insets using an X-ray source with a known spectrum.

A synthetic CBCT scan of a water disk with three insets: bone, aluminium and titanium

A synthetic CBCT scan of a numerical head phantom, including scatter

A CBCT scan of a skull using the Hi-Res mode of the Morita 3D Accuitomo 170 device.
DOI: 10.15468/dl.st7ney
title: Occurrence Download

description: A dataset containing 189843342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 189843342 records from 4110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044739-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frffn6
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.28_1",
 "TaxonKey is Medicago falcata"
 ]
}

 The dataset includes 249 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053085-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9maekz
title: Occurrence Download

description: A dataset containing 15702 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dianthus chinensis"
 ]
}

 The dataset includes 15702 records from 347 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053086-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efmzc5
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is FRA.11.1_1",
 "TaxonKey is Myotis myotis"
 ]
}

 The dataset includes 120 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053087-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8k7a45
title: Occurrence Download

description: A dataset containing 1231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salpichroa origanifolia",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1231 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053088-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57680/asep.0638849
title: Output multireference paper

description: Molden file for all the orbitals for the publication Multireference Theory of Scanning Tunneling Spectroscopy Beyond One-Electron Molecular Orbitals: Can We Image Molecular Orbitals? These are the files needed to plot all the molecular, natural and Dyson orbitals included in the text with any standar software tool for that purpose (Vesta, VMD, etc). Since the work is theoretical, no measurements are associated to it and therefore no raw data of any experiment is provided.
DOI: 10.15468/dl.4k6j8v
title: Occurrence Download

description: A dataset containing 91225 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dianthus armeria"
 ]
}

 The dataset includes 91225 records from 1463 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053028-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8782sw
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apodemus draco (Barrett-Hamilton, 1900)",
 "Year 1970-2000"
 ]
}

 The dataset includes 131 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013196-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2j6vf
title: Occurrence Download

description: A dataset containing 374527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is one of (CHN.2_1, CHN.2.1_1, CHN.2.1.1_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "Year 2020-2024"
 ]
}

 The dataset includes 374527 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013179-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4ev72
title: Occurrence Download

description: A dataset containing 30928274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Literature Occurrence, Specimen, Unknown evidence, Machine Observation)",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2024",
 "HasCoordinate is true"
 ]
}

 The dataset includes 30928274 records from 372 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013176-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26191034
title: Puerto Rican Oriole Song and Rate Data

description: Our understanding of elaborate signaling behaviors, such as bird song, has been hindered by historical biases towards male animals. Bird song has been shown to serve important functions like defending territories or attracting mates in both males and females, and singing in both sexes is likely the ancestral trait for songbirds. Female song is strongly associated with year-round territory defense, especially in the tropics. However, more studies of both male and female song are needed to better understand the selection pressures acting on this elaborate signal trait. The common ancestor of the New World orioles (<i>Icterus</i>) was likely a nonmigratory tropical species, with both males and females singing and defending year-round territories. The Puerto Rican Oriole (<i>Icterus portoricensis) </i>has these natural history characteristics, but little is known about how each sex uses song in this understudied Caribbean endemic. We found that while male and female songs were significantly different acoustically, they were indistinguishable in the field, and showed no sex-specific pattern in syllable usage. Males sang at higher rates than females during the dawn chorus, but females sang frequently during the day. Song is likely evolving as a unified trait in this species, reflecting the characteristics of the common ancestor, but may serve different functions for each sex. In the future, playback studies and rate observations throughout the full day and throughout the year will provide additional insight into how males and females of this tropical songbird may be using their songs.
DOI: 10.5281/zenodo.11074142
title: VulneraCity - The urban vulnerability drivers database

description: VulneraCity is a database of unique urban vulnerability drivers for six different hazards (Coastal flooding, Pluvial flooding, Earthquakes, Heatwaves, Drought, Waterborne diseases), providing descriptions, classifications, and sources. The drivers are collected from over 450 individual studies, based on a systematic literature review. For more info, please see our accompanying paper (please cite this when using VulneraCity in your own work): 

Stolte, T. R., Koks, E. E., De Moel, H., Reimann, L., Van Vliet, J., De Ruiter, M. C., & Ward, P. J. (2024). VulneraCity–drivers and dynamics of urban vulnerability based on a global systematic literature review. International Journal of Disaster Risk Reduction, 108, 104535. https://doi.org/10.1016/j.ijdrr.2024.104535
DOI: 10.5281/zenodo.8282814
title: VulneraCity - The urban vulnerability drivers database

description: VulneraCity is a database of unique urban vulnerability drivers for six different hazards (Coastal flooding, Pluvial flooding, Earthquakes, Heatwaves, Drought, Waterborne diseases), providing descriptions, classifications, and sources. The drivers are collected from over 450 individual studies, based on a systematic literature review. For more info, please see our accompanying paper (please cite this when using VulneraCity in your own work): 

Stolte, T. R., Koks, E. E., De Moel, H., Reimann, L., Van Vliet, J., De Ruiter, M. C., & Ward, P. J. (2024). VulneraCity–drivers and dynamics of urban vulnerability based on a global systematic literature review. International Journal of Disaster Risk Reduction, 108, 104535. https://doi.org/10.1016/j.ijdrr.2024.104535
DOI: 10.5281/zenodo.8282815
title: VulneraCity - The urban vulnerability drivers database

description: VulneraCity is a database of unique urban vulnerability drivers for six different hazards (Coastal flooding, Pluvial flooding, Earthquakes, Heatwaves, Drought, Waterborne diseases), providing descriptions, classifications, and sources. The drivers are collected from over 450 individual studies, based on a systematic literature review. For more info, please see our accompanying paper (link on our Zenodo page).

Stolte, T. R., Koks, E. E., De Moel, H., Reimann, L., Van Vliet, J., De Ruiter, M. C., & Ward, P. J. (2024). VulneraCity–drivers and dynamics of urban vulnerability based on a global systematic literature review. International Journal of Disaster Risk Reduction, 108, 104535. https://doi.org/10.1016/j.ijdrr.2024.104535
DOI: 10.5281/zenodo.10819313
title: Development of a synthetic vulnerable population for four major metropolitan regions in Canada

description: Code and source data to generate a synthetic population of potentially vulnerable individuals at the DA levels for four canadian metropolitan regions (Calgary, Montreal, Toronto, Vancouver). The repository also includes the results and code to analyse them.

It is shared as a complementary material for the article "A synthetic vulnerable population dataset for fine scale geographical equity analysis and policy assessment in urban projects.". (submitted), Jérémy Gelb, Philippe Apparicio, Hamzeh Alizadeh
DOI: 10.5281/zenodo.12665859
title: Development of a synthetic vulnerable population for four major metropolitan regions in Canada

description: Code and source data to generate a synthetic population of potentially vulnerable individuals at the DA levels for four canadian metropolitan regions (Calgary, Montreal, Toronto, Vancouver). The repository also includes the results and code to analyse them.

It is shared as a complementary material for the article "A synthetic vulnerable population dataset for fine scale geographical equity analysis and policy assessment in urban projects.". (submitted), Jérémy Gelb, Philippe Apparicio, Hamzeh Alizadeh
DOI: 10.5281/zenodo.12666117
title: Disulfide Bond Replacement with Non-Reducible Side Chain to Tail Macrolactamization for the Development of Potent and Selective CXCR4 Peptide Antagonists Endowed with Flanking Binding Sites

description: The present study describes a small library of peptides derived from a potent and selective CXCR4 antagonist (3), wherein the native disulfide bond is replaced using a side-chain to tail macrolactamization technique to vary ring size and amino acid composition. The peptides were preliminary assessed for their ability to interfere with the interaction between the receptor and anti-CXCR4 PE-conjugated antibody clone 12G5. Two promising candidates (13 and 17) were identified and further evaluated in a 125I-CXCL12 competition binding assay, exhibiting IC50 in the low-nanomolar range. Furthermore, both candidates displayed high selectivity towards CXCR4 with respect to the cognate receptor CXCR7, ability to block CXCL12-dependent cancer cell migration, and receptor internalization, albeit at a higher concentration compared to 3. Molecular modeling studies on 13 and 17 produced a theoretical model that may serve as a guide for future modifications, aiding in the development of analogs with improved affinity. Finally, the study provides valuable insights into developing therapeutic agents targeting CXCR4-mediated processes, demonstrating the adaptability of our lead peptide 3 to alternative cyclization approaches and offering prospects for comprehensive investigations into the receptor region's interaction with its C-terminal region.
DOI: 10.5281/zenodo.11926388
title: Disulfide Bond Replacement with Non-Reducible Side Chain to Tail Macrolactamization for the Development of Potent and Selective CXCR4 Peptide Antagonists Endowed with Flanking Binding Sites

description: The present study describes a small library of peptides derived from a potent and selective CXCR4 antagonist (3), wherein the native disulfide bond is replaced using a side-chain to tail macrolactamization technique to vary ring size and amino acid composition. The peptides were preliminary assessed for their ability to interfere with the interaction between the receptor and anti-CXCR4 PE-conjugated antibody clone 12G5. Two promising candidates (13 and 17) were identified and further evaluated in a 125I-CXCL12 competition binding assay, exhibiting IC50 in the low-nanomolar range. Furthermore, both candidates displayed high selectivity towards CXCR4 with respect to the cognate receptor CXCR7, ability to block CXCL12-dependent cancer cell migration, and receptor internalization, albeit at a higher concentration compared to 3. Molecular modeling studies on 13 and 17 produced a theoretical model that may serve as a guide for future modifications, aiding in the development of analogs with improved affinity. Finally, the study provides valuable insights into developing therapeutic agents targeting CXCR4-mediated processes, demonstrating the adaptability of our lead peptide 3 to alternative cyclization approaches and offering prospects for comprehensive investigations into the receptor region's interaction with its C-terminal region.
DOI: 10.15468/dl.szx3kf
title: Occurrence Download

description: A dataset containing 12934999 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Gastropoda"
 ]
}

 The dataset includes 12934999 records from 5443 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013174-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjyy6n
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium uistense (Pugsley) P.D.Sell & C.West"
 ]
}

 The dataset includes 63 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020921-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjruuw
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dicksonia spruceana Mett. ex Kuhn"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037810-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxd698
title: Occurrence Download

description: A dataset containing 6905471 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Victorian Biodiversity Atlas"
 ]
}

 The dataset includes 6905471 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058893-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9t8y5
title: Occurrence Download

description: A dataset containing 26137 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemerocallis fulva (L.) L."
 ]
}

 The dataset includes 26137 records from 565 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020848-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kl9tfj
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Polylepis racemosa Ruiz & Pav."
 ]
}

 The dataset includes 79 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037813-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8x2ywz
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is RISC Non-Native Species Records for Zebra Mussel"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0260602-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b48xnt
title: Occurrence Download

description: A dataset containing 2035 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Magnolia obovata Thunb.",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2035 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020836-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xssrne
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megachasma Taylor, Compagno & Struhsaker, 1983"
 ]
}

 The dataset includes 47 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037815-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sc6eck
title: Occurrence Download

description: A dataset containing 1532 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diplacus nanus (Hook. & Arn.) G.L.Nesom"
 ]
}

 The dataset includes 1532 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041717-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74up84
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium farrense F.Hanb."
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020892-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.