cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6mzu7w
title: Occurrence Download

description: A dataset containing 502413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Pycnonotus cafer (Linnaeus, 1766)",
 "Year 2010-2020"
 ]
}

 The dataset includes 502413 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000333-250226161807615/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.msfft4
title: Occurrence Download

description: A dataset containing 4975 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boa imperator Daudin, 1803"
 ]
}

 The dataset includes 4975 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000361-250226161807615/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4sh57
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gadoria falukei Güemes & Mota)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2020"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000365-250226161807615/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/4644
title: REFUTE
DOI: 10.15468/dl.wkfvrp
title: Occurrence Download

description: A dataset containing 636 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bufotes pewzowi (Bedriaga, 1898)"
 ]
}

 The dataset includes 636 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000366-250226161807615/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9emsgp
title: Occurrence Download

description: A dataset containing 150417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Geopelia striata (Linnaeus, 1766)",
 "Year 2010-2020"
 ]
}

 The dataset includes 150417 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000346-250226161807615/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14920149
title: Development of 1-tube EpiTOF panel

description: This CyTOF/mass cytometry dataset summarizes the development of a 1-tube EpiTOF panel.  This compiles Methylation and Acetylation markers into a single panel, rather than 2 panels as in FR-FCM-Z8FS and FR-FCM-Z8GB on FlowRepository.

Other differences relative to FR datasets:



Addition of more surface markers

Revision of gating pathway

Reduction of Panel 1 and Panel 2 into a single intracellular panel, due to partial redundancy of certain markers, as determined by the Khatri and Utz labs (https://doi.org/10.1101/2022.01.21.477300 and https://doi.org/10.1016/j.isci.2022.105756)

Frozen surface cocktail - more consistent staining between plates/batches

Intracellular cocktail:  roughly half the markers frozen (more consistent staining between plates/batches), roughly half needed to be added as liquid reagents (did not perform well when also frozen)

FBS/DMSO -80C freezing of fully stained (including Ir) samples allowed more samples or plates per staining Batch, increasing throughput


Trial 11 and 11b finish the development work.  Trial 14, 15, and 15B are the final cocktail prep testing for antibody stocks for a Gates Foundation project.

All donors included in testing files are healthy donor PBMCs, processed from LRS chambers from the Stanford Blood Center.  The files were acquired on a Helios mass cytometer (Standard BioTools), normalized using the CyTOF software and the included EQ4 beads (then concatenated if necessary), then debarcoded using the CyTOF software (20plex Pd barcoding kit as in the included staining protocol).  Only the Normalized (concatenated) Debarcoded files are included in this dataset.

 

Grant ID:  INV-008378

Funding Source:  Bill and Melinda Gates Foundation

 

We also acknowledge the Purvesh Khatri Lab and PJ Utz Lab (both Stanford University) for initial development.
DOI: 10.5281/zenodo.14920148
title: Development of 1-tube EpiTOF panel

description: This CyTOF/mass cytometry dataset summarizes the development of a 1-tube EpiTOF panel.  This compiles Methylation and Acetylation markers into a single panel, rather than 2 panels as in FR-FCM-Z8FS and FR-FCM-Z8GB on FlowRepository.

Other differences relative to FR datasets:



Addition of more surface markers

Revision of gating pathway

Reduction of Panel 1 and Panel 2 into a single intracellular panel, due to partial redundancy of certain markers, as determined by the Khatri and Utz labs (https://doi.org/10.1101/2022.01.21.477300 and https://doi.org/10.1016/j.isci.2022.105756)

Frozen surface cocktail - more consistent staining between plates/batches

Intracellular cocktail:  roughly half the markers frozen (more consistent staining between plates/batches), roughly half needed to be added as liquid reagents (did not perform well when also frozen)

FBS/DMSO -80C freezing of fully stained (including Ir) samples allowed more samples or plates per staining Batch, increasing throughput


Trial 11 and 11b finish the development work.  Trial 14, 15, and 15B are the final cocktail prep testing for antibody stocks for a Gates Foundation project.

All donors included in testing files are healthy donor PBMCs, processed from LRS chambers from the Stanford Blood Center.  The files were acquired on a Helios mass cytometer (Standard BioTools), normalized using the CyTOF software and the included EQ4 beads (then concatenated if necessary), then debarcoded using the CyTOF software (20plex Pd barcoding kit as in the included staining protocol).  Only the Normalized (concatenated) Debarcoded files are included in this dataset.

 

Grant ID:  INV-008378

Funding Source:  Bill and Melinda Gates Foundation

 

We also acknowledge the Purvesh Khatri Lab and PJ Utz Lab (both Stanford University) for initial development.
DOI: 10.15468/dl.pht9b4
title: Occurrence Download

description: A dataset containing 162981 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)",
 "Year 2004-2024"
 ]
}

 The dataset includes 162981 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000314-250226161807615/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5d8mc9
title: Occurrence Download

description: A dataset containing 38973 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elaeagnus umbellata Thunb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 38973 records from 303 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007790-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hej5dk
title: Occurrence Download

description: A dataset containing 13051653 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Austria"
 ]
}

 The dataset includes 13051653 records from 1577 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007785-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc14j90z
title: CCDC 1058340: Experimental Crystal Structure Determination

description: Related Article: Eser S. Akturk, Glenn P. A. Yap, Klaus H. Theopold|2015|Chem.Commun.|51|15402|doi:10.1039/C5CC05993C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14j910
title: CCDC 1058341: Experimental Crystal Structure Determination

description: Related Article: Eser S. Akturk, Glenn P. A. Yap, Klaus H. Theopold|2015|Chem.Commun.|51|15402|doi:10.1039/C5CC05993C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14j921
title: CCDC 1058342: Experimental Crystal Structure Determination

description: Related Article: Eser S. Akturk, Glenn P. A. Yap, Klaus H. Theopold|2015|Chem.Commun.|51|15402|doi:10.1039/C5CC05993C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14j943
title: CCDC 1058344: Experimental Crystal Structure Determination

description: Related Article: Zhongxing Huang, Quynh P. Sam, Guangbin Dong|2015|Chemical Science|6|5491|doi:10.1039/C5SC01636C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14j954
title: CCDC 1058345: Experimental Crystal Structure Determination

description: Related Article: Zhongxing Huang, Quynh P. Sam, Guangbin Dong|2015|Chemical Science|6|5491|doi:10.1039/C5SC01636C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14j965
title: CCDC 1058346: Experimental Crystal Structure Determination

description: Related Article: Zhongxing Huang, Quynh P. Sam, Guangbin Dong|2015|Chemical Science|6|5491|doi:10.1039/C5SC01636C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc14j987
title: CCDC 1058348: Experimental Crystal Structure Determination

description: Related Article: Somayeh Fani, Behnam Kamalidehghan, Kong Mun Lo, Najihah Mohd Hashim, Fatemeh Ahmadipour, Kit May Chow|2015|Drug Design, Development and Therapy|2015|6191|doi:10.2147/DDDT.S87064
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc14j976
title: CCDC 1058347: Experimental Crystal Structure Determination

description: Related Article: P. P. Mukovoz, V. O. Koz’minykh, A. V. Gorbunova, E. N. Koz’minykh, P. A. Slepukhin, I. N. Ganebnykh, O. S. El’tsov|2016|Zh.Org.Khim.|52|838|doi:10.1134/S1070428016060130
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc14j998
title: CCDC 1058349: Experimental Crystal Structure Determination

description: Related Article: Aysun Bulut, Yunus Zorlu, Michael Wörle, Salih Paşa, Hüseyin Kurt, Jon Zubieta, Jens Beckmann and Gündoğ Yücesan|2016|Eur.J.Inorg.Chem.|2016|3506|doi:10.1002/ejic.201600309
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12zxwv
title: CCDC 1012828: Experimental Crystal Structure Determination

description: Related Article: E.G. Leach, A.A. Kulesza, R.J. Staples, S.M. Biros|2015|Acta Crystallogr.,Sect.E:Cryst.Commun.|71|523|doi:10.1107/S2056989015006994
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14j9b9
title: CCDC 1058350: Experimental Crystal Structure Determination

description: Related Article: Ahmed M. Moneeb, Abdullah M. Alabdulrahman, Abdulaziz A. Bagabas, Cory K. Perkins, Allen W. Apblett|2016|Ceramics Int.|42|1366|doi:10.1016/j.ceramint.2015.09.076
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14jbvv
title: CCDC 1058397: Experimental Crystal Structure Determination

description: Related Article: E.G. Leach, A.A. Kulesza, R.J. Staples, S.M. Biros|2015|Acta Crystallogr.,Sect.E:Cryst.Commun.|71|523|doi:10.1107/S2056989015006994
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc14j9cb
title: CCDC 1058351: Experimental Crystal Structure Determination

description: Related Article: Kevin Cormier, R. Daniel Curry, Mitchel P. Betsch, Jeremy A. Goguen, Christopher M. Vogels, Andreas Decken, Sandra Turcotte and Stephen A. Westcott|2016|J.Heterocycl.Chem.|53|1807|doi:10.1002/jhet.2490
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14j9dc
title: CCDC 1058352: Experimental Crystal Structure Determination

description: Related Article: Anne Scheja, Dirk Baabe, Dirk Menzel, Clemens Pietzonka, Peter Schweyen and Martin Bröring|2015|Chem.-Eur.J.|21|14196|doi:10.1002/chem.201501551
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14j9fd
title: CCDC 1058353: Experimental Crystal Structure Determination

description: Related Article: Anne Scheja, Dirk Baabe, Dirk Menzel, Clemens Pietzonka, Peter Schweyen and Martin Bröring|2015|Chem.-Eur.J.|21|14196|doi:10.1002/chem.201501551
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14j9gf
title: CCDC 1058354: Experimental Crystal Structure Determination

description: Related Article: Anne Scheja, Dirk Baabe, Dirk Menzel, Clemens Pietzonka, Peter Schweyen and Martin Bröring|2015|Chem.-Eur.J.|21|14196|doi:10.1002/chem.201501551
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14j9hg
title: CCDC 1058355: Experimental Crystal Structure Determination

description: Related Article: Anne Scheja, Dirk Baabe, Dirk Menzel, Clemens Pietzonka, Peter Schweyen and Martin Bröring|2015|Chem.-Eur.J.|21|14196|doi:10.1002/chem.201501551
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14j9jh
title: CCDC 1058356: Experimental Crystal Structure Determination

description: Related Article: Anne Scheja, Dirk Baabe, Dirk Menzel, Clemens Pietzonka, Peter Schweyen and Martin Bröring|2015|Chem.-Eur.J.|21|14196|doi:10.1002/chem.201501551
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cczdf5y
title: CCDC 905670: Experimental Crystal Structure Determination

description: Related Article: Soma Maitra, Jana L. Markley, Rambabu Chegondi, Paul R. Hanson|2015|Tetrahedron|71|5734|doi:10.1016/j.tet.2015.06.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cczdf4x
title: CCDC 905669: Experimental Crystal Structure Determination

description: Related Article: Soma Maitra, Jana L. Markley, Rambabu Chegondi, Paul R. Hanson|2015|Tetrahedron|71|5734|doi:10.1016/j.tet.2015.06.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14j9ml
title: CCDC 1058359: Experimental Crystal Structure Determination

description: Related Article: H. Anana, C. Trifa, S. Bouacida, C. Boudaren and H. Merazig|2015|Acta Crystallogr.,Sect.E:Cryst.Commun.|71|114|doi:10.1107/S2056989015007008
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14jbyy
title: CCDC 1058400: Experimental Crystal Structure Determination

description: Related Article: Soma Maitra, Jana L. Markley, Rambabu Chegondi, Paul R. Hanson|2015|Tetrahedron|71|5734|doi:10.1016/j.tet.2015.06.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14g24t
title: CCDC 1056205: Experimental Crystal Structure Determination

description: Related Article: Stefan Munneke, Gavin F. Painter, Graeme J. Gainsford, Bridget L. Stocker, Mattie S.M. Timmer|2015|Carbohydr.Res.|414|1|doi:10.1016/j.carres.2015.05.017
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14jc23
title: CCDC 1058404: Experimental Crystal Structure Determination

description: Related Article: Gellert Mezei|2015|Chem.Commun.|51|10341|doi:10.1039/C5CC03005F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc14jc34
title: CCDC 1058405: Experimental Crystal Structure Determination

description: Related Article: Gellert Mezei|2015|Chem.Commun.|51|10341|doi:10.1039/C5CC03005F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.