cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/q805j
title: Senate Unpassed Legislation 1805, Docket 3319, SC1/series 231, Petition of York Perkins

description: &lt;p&gt;Petition subject: Concerning property &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:11148845"&gt;http://nrs.harvard.edu/urn-3:FHCL:11148845&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Norwich &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: Standing committee on applications for new trials &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;York Perkins&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1805-02-19,1805-02-21 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the Senate on February 19, 1805 and committed to the standing committee on applications for new trials to hear the parties and report and sent for concurrence and received in the House on February 21, 1805 and concurred &lt;/p&gt; &lt;p&gt;Total signatures: 1 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, committed, sent, received, concurred &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 1 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: additional documents available &lt;/p&gt; &lt;p&gt;Additional archivist notes: Prince Wickam, transient African, purhcased lands, Daniel Sanford, registers office, sale, bond, notes, Rhoda Rhods, Hampshire county, sickness, labor, support, illness, expenses, doctoring, nursing, compensation, will, estate, suit, debts, foreigner &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Senate Unpassed 1805, Docket 3319 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/8trfzm
title: Non-oncological gynecological diagnoses in a women’s health care service during the pandemic caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS- CoV-2).

description: Cross-sectional study carried out at an Outpatient Gynecology Clinic of the Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo, Brazil. Sample corresponds medical consultations performed in the periods grouped in “pre-pandemic” and during the pandemic. The number of total visits, prevalence of non-oncological gynecological diagnoses and clinical-demographic data were analyzed.
description: these data were analyzed and are being used in a manuscript that will be submitted to the journal Plos one.
DOI: 10.7910/dvn/bf2vnk
title: Mixtepec Mixtec Language Resources

description: Dataset contains multimedia recordings and metadata records from consultation sessions and fieldwork.
description: Praat, 6.0.19
description: Oxygen XML Editor, 19.1
description: For each sound or video file, the relevant metadata is included a separate TEI-XML file by the same name with the extension "*-metadata.xml". Additional contents from this project can be found in the following location: https://github.com/iljackb/Mixtepec_Mixtec
description: Documentation of all sound and video files included in a TEI-XML file which will have the same file name with the addition of "-metadata". Each XML file also contains the: the name of speakers recorded, participants involved in recording or elicitation, their role, date created, location, recording equipment used, as well as a record of the type of speech recorded are also included: e.g. 'observed speech', 'staged communicative event', 'staged-stimuli', 'elicitation' (general), 'contextualizing elicitation', 'translation-based elicitation', and 'elicitation judgement'.
DOI: 10.5061/dryad.3j9kd51pc
title: The evolutionary history of rice azaleas (Rhododendron tschonoskii alliance) involved niche evolution to a montane environment

description: Premise: The formation of isolated montane geography on islands promotes
 evolution, speciation and followed radiation with ecological changes.
 Thus, investigating evolutionary history of montane species and associated
 ecological changes may help efforts to understand how endemism formed in
 islands’ montane floras. To explore this process, we investigated the
 evolutionary history of the Rhododendron tschonoskii alliance, which grows
 in montane environments of the Japanese Archipelago and Korean Peninsula.
 Methods: We studied the five species of the R. tschonoskii alliance and 30
 outgroup species, using genome-wide single nucleotide polymorphisms and
 cpDNA sequences, in association with environmental analyses. Results: The
 monophyletic R. tschonoskii alliance diverged since the late Miocene, and
 its cold climatic niche largely differentiated from those of outgroup
 species. We observed clear genetic and niche differentiations between the
 taxa of the alliance. Conclusions: The association of the evolution of the
 alliance with formation of cooler climates on mountains indicates that it
 was driven by global cooling since the mid-Miocene and rapid uplift of
 mountains since the Pliocene. The combination of geographic and climatic
 isolations promoted high genetic differentiation between taxa, which has
 been maintained by climatic oscillations since the Quaternary.
description: Please read the README document ("README.md") and the
 accompanying published article: Yoichi W, Tamaki I, Oh S-H, Nagano AJ,
 Uehara K, Tomaru N, Abe H. 2023. The evolutionary history of rice azaleas
 (<em>Rhododendron</em> <em>tschonoskii</em>
 alliance) involved niche evolution to a montane environment. American
 Journal of Botany. https://doi.org/10.1002/ajb2.16166
DOI: 10.5061/dryad.n2z34tn1m
title: Grandparental co-residence and grandchild survival in a pre-industrial population

description: Although grandparents are and have been important alloparents to their
 grandchildren, they are not necessarily only beneficial but can also
 compete with grandchildren over limited resources. Competition over
 parental care or other resources may exist especially if grandparents live
 in the same household with grandchildren and it can be dependent on
 grandchild age. By utilising demographic data collected from historic
 population registers in Finland between 1761 and 1895 (study sample n =
 4041) we investigate whether grandparents living in the same household
 with grandchildren are detrimental or beneficial for grandchild survival.
 Having a living but not co-residing grandmother or grandfather were both
 associated with better survival whereas having a co-resident grandfather
 was associated with lower chance of survival for infants (age &lt; 1
 year). Separating the effect between maternal and paternal grandparents
 and grandmothers and grandfathers revealed no differences in the effects
 between lineages. Negative effect of having a co-residing grandfather was
 not significant when grandfathers were separated for lineage-specific
 models. These results implicate that accounting for the co-residence
 status and child’s age, grandparents were mostly beneficial when not
 co-residing with very young children and that having a co-residing
 grandfather at that age could be associated with lower chances to survive.
 Predictions made by grandmother hypothesis and resource competition both
 received support. The results presented here also offered comparison
 points to preindustrial and contemporary three-generational families.
DOI: 10.5061/dryad.612jm647d
title: Behavioral data for: A learning experience elicits sex-dependent neurogenomic responses in Bicyclus anynana butterflies

description: This is the behavioral data file that corresponds to the behavioral data
 reported in "A learning experience elicits sex-dependent neurogenomic
 responses in Bicyclus anyana butterflies" by D.A. Ernst, G.A.
 Agcaoili, A.N. Merrill, & E. L. Westerman, published in Molecular
 Ecology. It contains one spreadsheet, with all the behavioral data
 corresponding to the training, trainer, and naive butterflies utilized in
 the comparative brain and eye transcriptomics analyses conducted in the
 manuscript. In our study, we show that male and female B. anynana
 butterflies exhibit sexually dimorphic gene expression in the brain and
 eye during a learning event. We further identify genes that were
 associated with learning independent of sex and show that a number of
 genes known to influence wing pattern are also differentially expressed in
 the brain and eye during a mate choice learning event. The sexually
 dimorphic expression was not the result of baseline differences in
 activity levels, as males and females exhibited similar amounts of
 behavior during the training and naive experiences.
description: These data were collected during observations of training and
 naive assays of <em>Bicyclus anynana</em> female and male
 butterflies using SpectatorGo! software. Here we report the raw data for
 these training and naive assays.
description: This data set contains the butterfly behavioral observations that
 correspond to the 3hr training and naive experiences of the newly emerged
 focal butterflies used for brain and eye transcriptome comparisons in “A
 learning experience elicits sex-dependent neurogenomic responses in
 <em>Bicyclus</em> <em>anynana</em> butterflies”.
 It also contains the behavioral data for the sexually mature trainer
 butterflies (both male and female) that were used in the training periods.
 <br><br>“Subjects” refers to the butterfly name in the
 SpectatorGO! Software, with C1 referring to Cage 1, and C2 referring to
 Cage 2. <br><br>“Treatment” indicates status of individual,
 with “trained” being a newly emerged focal butterfly, “trainer” being a
 sexually mature butterfly of the opposite sex of the “trained” butterfly,
 and “naive” indicating a butterfly housed alone and visually isolated from
 other butterflies. The “trained” and “trainer” butterflies were visually
 isolated from all other butterflies. <br><br>There is no
 duration data for “flutter” or “antennae wiggle” because those two
 behaviors were recorded as instances, not durations.
 <br><br>Durations of less than 0.5 seconds were recorded by
 SpectatorGO! as a duration of 0.<br><br>Count % and Duration %
 were calculated by SpectatorGO!, and are included in this dataset, even
 though only Count and Duration data were used in the manuscript.
 <br><br>Butterflies that copulated during the training period
 were not used for the RNASeq experiment, as we did not want to confound
 neurological responses to training and copulating.
DOI: 10.5061/dryad.7wm37pvxr
title: Survival data and code: Camouflage using 3D surface disruption

description: Disruptive markings are common in animal patterns and can provide
 camouflage benefits by concealing the body’s true edges and/or by breaking
 the surface of the body into multiple depth planes. Disruptive patterns
 that are accentuated by high contrast borders are most likely to provide
 false depth cues to enhance camouflage, but studies to date have used
 visual detection models or humans as predators. We presented 3D-printed
 moth-like targets to wild bird predators to determine whether: (1) 3D prey
 with disrupted body surfaces have higher survival than 3D prey with
 continuous surfaces, (2) 2D prey with disruptive patterns or enhanced edge
 markings have higher survival than non-patterned 2D prey. We found a
 survival benefit for 3D prey with disrupted surfaces, even after
 accounting for luminance differences among the treatments. There was no
 evidence that false depth cues provided the same protective benefits as
 physical surface disruption in 3D prey, perhaps because our treatments did
 not mimic the complexity of patterns found in natural animal markings. Our
 findings indicate that disruption of surface continuity is an important
 strategy for concealing a 3D body shape.
description: These data and supporting R code describe differences in survival
 among 3D-printed targets for six camouflage treatments: 3D non-patterned,
 2D non-patterned, 2D disruptive, 2D enhanced edge and 3D physical surface
 disruption (two versions). Targets were pinned on trees (with a mealworm
 as bait) in April/May 2021 in southwest Western Australia. Targets were
 checked for signs of predation (mealworm missing) 3, 5 and 19 hours after
 placement. A subset of targets was photographed for avian visual
 modelling, allowing measurement of the luminance of targets in
 situ.
description: Analyses run on R version 4.1.0 (2021-05-18), macOS 12.6 and
 RStudio 2022.07.1, Build 554.
DOI: 10.5061/dryad.v15dv4212
title: Patterns and drivers of soil surface-dwelling Oribatida diversity along an altitudinal gradient on the Changbai Mountain, China

description: Distribution patterns of biodiversity and environmental interactions are
 dominant themes in ecology. In montane ecosystems, biodiversity is closely
 associated with altitudinal gradients. However, studies of biodiversity in
 montane ecosystems is focused on plants and vertebrates, with relatively
 less on invertebrates. Here, the present study used a Vortis arthropod
 suction sampler to explore the biodiversity patterns of soil
 surface-dwelling Oribatida and their drivers along an altitudinal gradient
 (600 m, 800 m, 1600 m, 2000 m, and 2300 m) from typically temperate
 forests, evergreen coniferous forests, subalpine birch forests to alpine
 tundra on the north slope of Changbai Mountain, Northeast China.
 Trichoribates berlesei, Platynothrus peltifer, and Oribatula tibialis were
 the dominant soil surface-dwelling species on Changbai Mountain.
 Generally, alpha diversity and beta diversity of soil surface-dwelling
 Oribatida decreased with the rising altitude, with a peaking density value
 at 2000 m. The result of beta diversity showed that the structuring of the
 community was more influenced by the species turnover component than the
 nestedness component. Non-metric multidimensional scaling (NMDS)
 ordination showed that the community structure of soil surface-dwelling
 Oribatida varied significantly along the altitudinal gradient. The
 variance partitioning showed that the elevation and climatic conditions
 determined the soil surface-dwelling Oribatida community. Spatial
 filtering represented by geographic and elevation distances was
 particularly associated with soil surface-dwelling Oribatida community
 variation between altitudes on Changbai Mountain. However, the variation
 of the Oribatida community between adjacent altitudes was only associated
 with geographic distance. Our study provides supportive evidence for the
 biodiversity analyzing of soil surface-dwelling Oribatida in montane
 ecosystems along an altitudinal gradient.
DOI: 10.5061/dryad.pc866t1t8
title: The impact of parasitic infection on acoustic communication and mate choice in two torrent frogs with nonlinear vocalization

description: For frogs with linear vocalization, Hamilton and Zuk’s hypothesis
 indicated that parasites adversely affect male sex characters and parasite
 infection can result in sexual signals that are less intense or
 conspicuous than in healthy individuals, which causes females to prefer
 unparasitized over parasitized males. In order to investigate the effects
 of parasite infection on vocal characteristics and mate choice in frogs,
 which can emit nonlinear phenomena calls (NLP). The calls of the two
 species of torrent male frog, namely the concave-eared torrent frog
 (Odorrana tormota) and the large odorous frog (Odorrana graminea), were
 recorded, and several vocal parameters (calling duration, calling rate,
 average fundamental frequency, NLP duration and NLP content) and parasite
 intensity were analyzed in detail. The results revealed a negative
 relationship between calling rate and parasite intensity and a positive
 relationship between NLP content and parasite intensity. Furthermore, the
 effects of parasite intensity on amplectant showed that parasite intensity
 from amplexed pairs was higher than that of solo males in the vicinity of
 the amplexus. This might be because both male frogs with higher parasite
 intensity can emit calls with higher NLP content, and it has been shown
 that females have a preference for high NLP content. This study confirms
 that parasites can influence the NLP content in both torrent frog’ calls,
 which in turn affects the host’ mate choice. The current study suggests
 effects of parasite infection on mate choice in host frogs might be
 influenced by vocal manner, which provides new insight into the
 parasite-host relationship.
description: # Title: Impact of parasitic infection on mate choice in two torrent frogs
 with nonlinear vocalization --- Our three dataset files are the parasite
 species contained in the different organs of the two male frogs, the
 parasite content of the male selected by the female in the sexual
 selection experiment, and the parameters related to the amplectant male
 and the non-amplectant male (parasite content, body size, environmental
 parameters and acoustic parameters).
DOI: 10.5061/dryad.tb2rbp04t
title: Data from: Exceptional levels of species discovery ameliorate inferences of the biogeography and diversification of an Afrotropical catfish family

description: Endeavours in species discovery, particularly the characterisation of
 cryptic species, have been greatly aided by the application of DNA
 molecular sequence data to phylogenetic reconstruction and inference of
 evolutionary and biogeographic processes. However, the extent of cryptic
 and undescribed diversity remains unclear in tropical freshwaters, where
 biodiversity is declining at alarming rates. To investigate how data on
 previously undiscovered biodiversity impacts inferences of biogeography
 and diversification dynamics, we generated a densely sampled species-level
 family tree of Afrotropical Mochokidae catfishes that was ca. 70%
 complete. This was achieved through extensive continental sampling
 specifically targeting the genus Chiloglanis a specialist of the
 relatively unexplored fast-flowing lotic habitat. Applying multiple
 species-delimitation methods, we report exceptional levels of species
 discovery for a vertebrate genus, conservatively delimiting a staggering
 ca. 50 putative new Chiloglanis species, resulting in a near 80% increase
 in species richness for the genus. Biogeographic reconstructions of the
 family identified the Congo Basin as a critical region in the generation
 of mochokid diversity, and our study further revealed complex scenarios
 for the build-up of continental assemblages of the two most species-rich
 mochokid genera, Synodontis and Chiloglanis. While Syndontis showed most
 divergence events within freshwater ecoregions consistent with largely in
 situ diversification, Chiloglanis showed much less aggregation of
 freshwater ecoregions, suggesting dispersal as a key diversification
 process in this older group. Despite the significant increase in mochokid
 diversity identified here, diversification rates were best supported by a
 constant rate model consistent with patterns in many other tropical
 continental radiations. While our findings highlight fast-flowing lotic
 freshwaters as potential hotspots for undescribed and cryptic species
 diversity, a third of all freshwater fishes are currently threatened with
 extinction, signifying an urgent need to increase exploration of tropical
 freshwaters to better characterise and conserve its biodiversity.
description: Matricies can be opened in Geneious software or a text editor.
 Programmes used to analyse these data inlcude Mr Bayes, IQ-Tree,
 BEAST.
DOI: 10.5061/dryad.4xgxd25f0
title: Data from: The CellPhe toolkit for cell phenotyping using time-lapse imaging and pattern recognition

description: With phenotypic heterogeneity in whole cell populations widely recognised,
 the demand for quantitative and temporal analysis approaches to
 characterise single cell morphology and dynamics has increased. We present
 CellPhe, a pattern recognition toolkit for the unbiased characterisation
 of cellular phenotypes within time-lapse videos. CellPhe imports tracking
 information from multiple segmentation and tracking algorithms to provide
 automated cell phenotyping from different imaging modalities, including
 fluorescence. To maximise data quality for downstream analysis, our
 toolkit includes automated recognition and removal of erroneous cell
 boundaries induced by inaccurate tracking and segmentation. We provide an
 extensive list of features extracted from individual cell time series,
 with custom feature selection to identify variables that provide the
 greatest discrimination for the analysis in question. Using ensemble
 classification for accurate prediction of cellular phenotype and
 clustering algorithms for the characterisation of heterogeneous subsets,
 we validate and prove adaptability using different cell types and
 experimental conditions.
description: Cells were placed onto the Phasefocus Livecyte 2 (Phasefocus
 Limited, Sheffield, UK) and incubated for 30 minutes prior to image
 acquisition to allow for temperature equilibration. One 500μm x 500μm
 field of view per well was imaged to capture as many cells as possible.
 Selected wells were imaged in parallel for 48 hours at 20x magnification
 with 6-minute intervals between frames, resulting in full time-lapses of
 481 frames per imaged well. Phase and fluorescence images were acquired in
 parallel for each well. For phase images, Phasefocus’ Cell Analysis
 Toolbox® software was utilised for cell segmentation, cell tracking, and
 data exportation as feature tables. Segmentation thresholds were optimised
 for a range of image processing techniques such as rolling ball algorithm
 to remove background noise, image smoothing for cell edge detection, and
 local pixel maxima detection to identify seed points for
 final consolidation.<br><br>For fluorescence images, the
 TrackMate-Cellpose ImageJ plugin was used for cell segmentation and
 tracking. Cells were segmented using Cellpose’s pre-trained cytoplasm
 model and image contrast was enhanced prior to segmentation to improve the
 detection of cell boundaries. Once complete, TrackMate feature tables and
 individual cell ROIs were exported from ImageJ v2.9.0-153t. Prior to use
 with CellPhe, it was necessary to interpolate TrackMate-Cellpose ROIs to
 obtain a complete list of cell boundary coordinates. Interpolation of ROIs
 was performed using a custom ImageJ macro.
description: ROI files can be opened with ImageJ. Image .tif files can be
 opened with any imaging software including ImageJ. Feature tables are
 provided as comma separated files and can be opened with Excel, for
 example.