cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12789320
title: Deep Learning Neural Network Development for the Classification of Bacteriocin Sequences Produced by Lactic Acid Bacteria

description: This project contains the following underlying data:

      Software-Related Files

               ·         BacLABNet_script.ipynb (Deep Learning Neural Network for classification of Bacteriocin Sequences) 

               ·         embed_proteins.py (Recurrent Neural Network to obtained the embedding vectors)

               ·         model_I22.h5 (This file contains the trained weights of the trained model)

               ·         model_I22.json (This file contains the structure of the trained model)

               ·         rnn_gru.pt (Initial weights of the Recurrent Neural Network to obtain embedding vectors)

               ·         List_kmers.csv (List of 5-mers and 7-mers obtained from dataset after it filtered sequences shorter than 50 aa and                           longer than 2000 aa)

             

      Files Used for Training, Testing, and Validation of the Neural Network

               ·         data_nonBacLAB.csv (25000 nonBacLAB amino acid sequences retrieved from Uniprot)

               ·         data_BacLAB.csv (24964 BacLAB amino acid sequences retrieved from Uniprot)

     

       Additional Files

                ·         data_BacLAB_and_nonBacLAB.csv (Combination of sequences from data_BacLAB.csv and data_nonBacLAB.csv)

                 ·         all k.mers list.xlsx (Table of all k-mers obtained for k=3,5,7,15,20)

 

Note: Codes are additionally available on GitHub. 

Data are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication)(http://creativecommons.org/publicdomain/zero/1.0/)
DOI: 10.5281/zenodo.12789321
title: Deep Learning Neural Network Development for the Classification of Bacteriocin Sequences Produced by Lactic Acid Bacteria

description: This project contains the following underlying data:

               ·         BacLABNet_script.ipynb (Deep Learning Neural Network for classification of Bacteriocin Sequences) 

               ·         embed_proteins.py (Recurrent Neural Network to obtained the embedding vectors)

               ·         model_I22.h5 (This file contains the trained weights of the trained model)

               ·         model_I22.json (This file contains the structure of the trained model)

               ·         rnn_gru.pt (Initial weights of the Recurrent Neural Network to obtain embedding vectors)

               ·         List_kmers.csv (List of 5-mers and 7-mers obtained from dataset after it filtered sequences shorter than 50 aa and                           longer than 2000 aa)

               ·         all k.mers list.xlsx (Table of all k-mers obtained for k=3,5,7,15,20)

Note: Codes are additionally available on GitHub.
DOI: 10.5281/zenodo.13159904
title: Deep Learning Neural Network Development for the Classification of Bacteriocin Sequences Produced by Lactic Acid Bacteria

description: This project contains the following underlying data:

      Software-Related Files

               ·         BacLABNet_script.ipynb (Deep Learning Neural Network for classification of Bacteriocin Sequences) 

               ·         embed_proteins.py (Recurrent Neural Network to obtained the embedding vectors)

               ·         model_I22.h5 (This file contains the trained weights of the trained model)

               ·         model_I22.json (This file contains the structure of the trained model)

               ·         rnn_gru.pt (Initial weights of the Recurrent Neural Network to obtain embedding vectors)

               ·         List_kmers.csv (List of 5-mers and 7-mers obtained from dataset after it filtered sequences shorter than 50 aa and                           longer than 2000 aa)

             

      Files Used for Training, Testing, and Validation of the Neural Network

               ·         data_nonBacLAB.csv (25000 nonBacLAB amino acid sequences retrieved from Uniprot)

               ·         data_BacLAB.csv (24964 BacLAB amino acid sequences retrieved from Uniprot)

     

       Additional Files

                ·         data_BacLAB_and_nonBacLAB.csv (Combination of sequences from data_BacLAB.csv and data_nonBacLAB.csv)

                 ·         all k.mers list.xlsx (Table of all k-mers obtained for k=3,5,7,15,20)

 

Note: Codes are additionally available on GitHub.
DOI: 10.15468/dl.vr5yva
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Speleomantes ambrosii (Lanza, 1955)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 86 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057311-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yq3myu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.650227 -33.117084, 148.650227 -33.11933, 148.652472 -33.11933, 148.652472 -33.117084, 148.650227 -33.117084))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057312-240626123714530/datasets/export for details.
DOI: 10.15468/dl.jy2b4y
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Speleomantes flavus (Stefani, 1969)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057313-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5sc5q
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Speleomantes supramontis (Lanza, Nascetti & Bullini, 1986)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 39 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057314-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tvmmd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.668193 -33.117084, 148.668193 -33.11933, 148.672685 -33.11933, 148.672685 -33.117084, 148.668193 -33.117084)), ((148.672685 -33.11933, 148.672685 -33.121576, 148.681668 -33.121576, 148.681668 -33.11933, 148.672685 -33.11933)), ((148.681668 -33.121576, 148.681668 -33.126067, 148.683914 -33.126067, 148.683914 -33.121576, 148.681668 -33.121576)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057315-240626123714530/datasets/export for details.
DOI: 10.15468/dl.ujews5
title: Occurrence Download

description: A dataset containing 286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bufotes boulengeri (Lataste, 1879)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 286 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057316-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3tvgq8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.717601 -33.117084, 148.717601 -33.121576, 148.719846 -33.121576, 148.719846 -33.117084, 148.717601 -33.117084))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057317-240626123714530/datasets/export for details.
DOI: 10.15468/dl.k47zzw
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bufotes siculus (Stöck, Sicilia, Belfiore, Buckley, Lo-Brutto, Lo-Valvo & Arculeo, 2008)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 42 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057318-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fw4xaw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.722092 -33.117084, 148.722092 -33.11933, 148.724338 -33.11933, 148.724338 -33.117084, 148.722092 -33.117084))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057319-240626123714530/datasets/export for details.
DOI: 10.15468/dl.43avfa
title: Occurrence Download

description: A dataset containing 598 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Stenocercus trachycephalus (Duméril, 1851)"
 ]
}

 The dataset includes 598 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057320-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9136976
title: BBC News
DOI: 10.15468/dl.u9jafg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.681048 -33.117084, 149.681048 -33.11933, 149.68554 -33.11933, 149.68554 -33.117084, 149.681048 -33.117084))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057321-240626123714530/datasets/export for details.
DOI: 10.15468/dl.9cfkyc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Speleomantes sarrabusensis Lanza, Leo, Forti, Cimmaruta, Caputo & Nascetti, 2001",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057322-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v42b44
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plecotus gaisleri Benda, Kiefer, Hanak & Veith, 2004",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057323-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9b29n
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.290899 -33.11933, 148.290899 -33.121576, 148.297636 -33.121576, 148.297636 -33.11933, 148.290899 -33.11933))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057324-240626123714530/datasets/export for details.
DOI: 10.15468/dl.86jbph
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spermophilus suslicus (Güldenstaedt, 1770)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 149 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057325-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26524660
title: <b>Evaluation of defense genes expression and the virulence factor </b><b><i>Cac1</i></b><b> in </b><b><i>Phaseolus vulgaris</i></b><b> and </b><b><i>Colletotrichum lindemuthianum</i></b><b> interaction</b>

description: In recent years, there has been great interest in understanding the different virulence factors of <i>Colletotrichum </i>spp. and the plant defense response. In this context, the aim of this study was to evaluate the defense response of Sutagao bean plants to two different isolates of <i>C. lindemuthianum</i> and the expression of the virulence factor <i>Cac1</i>, which is involved in the kinase signaling cascade that regulates the morphogenesis and pathogenesis of this fungus. Morphological, molecular, and pathogenicity characterizations of both isolates were performed, showing differences between them and classifying them into different groups within the <i>Colletotrichum</i> Orbiculare clade. In addition, in interaction with the plant, they differentially expressed the virulence factor <i>Cac1</i> in the early stages of infection, and the plant also differentially expressed some defense genes according to the virulence of the pathogen.Our research contributes to the understanding of the early expression of bean defense genes and the <i>Cac1</i> virulence factor of <i>C. lindemuthianum</i> during the infection process. Additionally, the methodologies and results can be of great help and interest to researchers in the molecular plant microbe interaction area.
DOI: 10.15468/dl.8rfqgv
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microtus tatricus Kratochvíl, 1952",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057326-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yzfe55
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.414418 -33.11933, 148.414418 -33.121576, 148.421155 -33.121576, 148.421155 -33.11933, 148.414418 -33.11933)), ((148.421155 -33.121576, 148.421155 -33.128313, 148.418909 -33.128313, 148.418909 -33.132805, 148.423401 -33.132805, 148.423401 -33.121576, 148.421155 -33.121576)))"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057327-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdyeb5
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rupicapra rupicapra tatrica Blahout, 1971",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 99 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057328-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjmw3k
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nyctalus azoreum (Thomas, 1901)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 186 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057329-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evv5av
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.638998 -33.11933, 148.638998 -33.126067, 148.641243 -33.126067, 148.641243 -33.11933, 148.638998 -33.11933))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057330-240626123714530/datasets/export for details.
DOI: 10.15468/dl.jfjsrs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.802322 -33.11933, 149.802322 -33.121576, 149.800076 -33.121576, 149.800076 -33.126067, 149.806813 -33.126067, 149.806813 -33.121576, 149.809059 -33.121576, 149.809059 -33.11933, 149.802322 -33.11933))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057331-240626123714530/datasets/export for details.
DOI: 10.15468/dl.9wj79g
title: Occurrence Download

description: A dataset containing 13232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Teira dugesii (Milne-Edwards, 1829)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 13232 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057332-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrtjgq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.544674 -33.121576, 148.544674 -33.123821, 148.549166 -33.123821, 148.549166 -33.121576, 148.544674 -33.121576))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057333-240626123714530/datasets/export for details.
DOI: 10.15468/dl.6dmkz5
title: Occurrence Download

description: A dataset containing 2742 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Balsamorhiza hookeri (Hook.) Nutt."
 ]
}

 The dataset includes 2742 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057334-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9anv9p
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alsodes coppingeri (Günther, 1881)"
 ]
}

 The dataset includes 32 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057335-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ek9vuj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triturus vulgaris ampelensis Fuhn, 1951",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057336-240626123714530/datasets/export for details.
DOI: 10.15468/dl.8cmrhg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.704126 -33.11933, 148.704126 -33.121576, 148.699634 -33.121576, 148.699634 -33.126067, 148.697388 -33.126067, 148.697388 -33.128313, 148.699634 -33.128313, 148.699634 -33.132805, 148.704126 -33.132805, 148.704126 -33.126067, 148.706372 -33.126067, 148.706372 -33.121576, 148.710863 -33.121576, 148.710863 -33.11933, 148.704126 -33.11933))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057337-240626123714530/datasets/export for details.
DOI: 10.15468/dl.wj6p4h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.980359 -33.126067, 148.980359 -33.128313, 148.987097 -33.128313, 148.987097 -33.126067, 148.980359 -33.126067))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057339-240626123714530/datasets/export for details.
DOI: 10.15468/dl.pfdsxb
title: Occurrence Download

description: A dataset containing 199 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cladophora ruchingeri (C.Agardh) Kütz."
 ]
}

 The dataset includes 199 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057340-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7xh23
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.508122 -33.128313, 149.508122 -33.132805, 149.510368 -33.132805, 149.510368 -33.128313, 149.508122 -33.128313))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057342-240626123714530/datasets/export for details.
DOI: 10.15468/dl.nc4wka
title: Occurrence Download

description: A dataset containing 66960 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Procambarus clarkii (Girard, 1852)"
 ]
}

 The dataset includes 66960 records from 529 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057341-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vf9une
title: Occurrence Download

description: A dataset containing 3625673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Circus cyaneus (Linnaeus, 1766)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 3625673 records from 2224 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057338-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6qypd
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Collection Cnidaria SMF",
 "Country is Croatia"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004826-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.