cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19311146.v1
title: The damage caused by Typhoon Hato to three different plant communicties in Macau, China

description: Super typhoon Hato is the strongest typhoon
affected Macao since 1953. During the typhoon, Macao recorded a maximum hourly
average wind speed of more than 12 degrees with the maximum gust speed of 217.4
km/h and a rainfall of more than 30 mm. Moreover, the typhoon happened to
coincide with a high astronomical tide, causing severe damage to plants
throughout the area. The forest ecosystem suffered sudden and severe damage. To
investigate the characteristics and regularity of the damage to forests caused
by this extremely strong typhoon, three representative vegetation types in
Macao were selected in this study. This dataset is the statistics of dynamic
changes of plant restoration and community characteristics, as well as the
response of plant phenology to the post-disaster recovery from three
representative communities selected from the permanent sample plots for
phenological monitoring since 2011 in Macao. This research might also serve as
a reference for future research on typhoon hazard on forest and breeding of
local wind-resistant plants.
DOI: 10.6084/m9.figshare.20549595.v1
title: Supplementary Material for: Treatment Experiences with Intravenous Immunoglobulins, Ixekizumab, Dupilumab, and Anakinra in Netherton Syndrome: A Case Series

description: <b><i>Background:</i></b> Netherton syndrome (NS) is a rare potential life-threatening disorder that causes severe defects to the skin barrier. No effective treatment options are available for patients with NS and current therapy is mostly supportive. The effects of intravenous immunoglobulins (IVIGs), ixekizumab, and dupilumab have scarcely been reported. Additionally, the role of anakinra in patients with NS has never been investigated. <b><i>Objectives:</i></b> The objective was to report our experiences of treatment with IVIG, ixekizumab, dupi­lumab, and anakinra in patients with NS. <b><i>Methods:</i></b> A retrospective case series, including 5 patients with NS, was performed in a tertiary referral hospital between 2016 and 2021. Patients were treated with IVIG, ixekizumab, dupilumab, and/or anakinra. Long-term experiences with treatment regimens and adverse events requiring medical attention were reported. <b><i>Results:</i></b> IVIG, ixekizumab, dupilumab, and anakinra were well tolerated with no severe adverse events. The 2 patients that received IVIG showed clinical response for 6 months and 2.5 years. Ixekizumab was effective in 1 of our patients for 3.5 years, while in another patient ixekizumab lost its effect after 1.5 years. Dupilumab treatment did not result in persistent improvement of NS-related skin symptoms in 1 patient. Anakinra showed physician-assessed clinical response during the first months of treatment in 4 patients with NS. During anakinra treatment, no changes in blood levels of IL-1β, IL-6, and TNF-α levels were measured at routine blood examinations. <b><i>Conclusions:</i></b> This case series suggests that the use of IVIG, ixekizumab, dupilumab, and anakinra in NS is safe and moderately effective on the short term. On the long term, a decline in effect was observed. Our experiences may help clinicians and researchers to provide adequate care and develop treatment for these severely affected patients. More international research, especially on the long term, is needed to determine if and which patients benefit most from the emerging therapies for NS.
DOI: 10.6084/m9.figshare.24192504.v1
title: A description of the MAT-files and the checked variables

description: A description of the MAT-files and the checked variables.
DOI: 10.6084/m9.figshare.928624.v2
title: Cannabis Microbiome Raw Sequence Data R1

description: Run 1 To use files download separately, gunzip, and concatenate as one large fastq file.
DOI: 10.6084/m9.figshare.28219097.v1
title: Supplementary Material for: Preoperative systemic chemotherapy including immune checkpoint inhibitors for patients with tumor-associated dermatomyositis.

description: Introduction: Immune checkpoint inhibitors (ICIs), used in cancer immunotherapy, enhance the immune system's ability to attack cancer cells. However, this activation can lead to severe immune-associated adverse events due to overactivation. In autoimmune diseases, the immune system mistakenly targets the body’s tissues, producing autoantibodies that cause inflammation and tissue damage. Despite the increasing use of ICIs, limited information exists on their effects and potential harms in patients with active autoimmune diseases, making it challenging to predict outcomes and manage risks for these patients.
Case Presentation: We report a case of a patient with breast cancer presenting with a rash and muscle weakness. The simultaneous onset of these symptoms, along with the rapid growth of the breast tumor, led to a diagnosis of tumor-associated dermatomyositis. The patient presented with locally advanced triple-negative breast cancer and received preoperative chemotherapy, including ICIs.
Conclusion: The administration of preoperative chemotherapy, including ICIs, to a patient with breast cancer and tumor-associated dermatomyositis was found to be a safe and effective treatment approach. There is a need to better understand the interplay between ICIs and autoimmune diseases and to develop safe and effective treatment strategies for this unique patient population.
DOI: 10.6084/m9.figshare.17294357.v2
title: Supplemental Table S1

description: Supplemental Table S1
DOI: 10.6084/m9.figshare.12227522.v4
title: Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere: QIIME2 output and intermediates

description: All files created by QIIME2 analysis after the merging of files for individual studies. Further details can be found at: https://github.com/R-Wright-1/Plastisphere-MetaAnalysisThese are all intermediate files for the meta-analysis presented in "Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere", published in The ISME Journal (https://www.nature.com/articles/s41396-020-00814-9)
DOI: 10.6084/m9.figshare.8091335.v1
title: FeatureSelectionAlgorithms.csv

description: This Database belongs to “A Database for Using Machine Learning and Data Mining Techniques for Coronary Artery Disease diagnosis” research paper. This database includes 15 tables. We chose to index papers related to CAD detection using machine learning and data mining approaches that are published between 1992 and 2018. These criteria result in 126 papers in which 490 authors contributed to these papers. These papers studied 68 different datasets with almost more than 360 distinct features collected in 18 countries from Asia, Europe, and America. In these papers, 140 different machine learning or data mining techniques were applied to diagnose CAD. To use csv file, open it in excel or import it in your database.
DOI: 10.6084/m9.figshare.19499426.v1
title: patches and local annotations, slide 152, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.28588589.v2
title: Robotically controlled terahertz probe for <i>in vivo</i> skin evaluation: imaging with the PicoBot

description: Development of an <i>in vivo</i> imaging probe for clinical use.
DOI: 10.17632/cds225snpr
title: Hourly Load Profile Sofiero Castle Helsingborg

description: This dataset contains the hourly load profile of the Sofiero Castle in Helsingborg, Sweden. This dataset can be used to reproduce the study.
DOI: 10.48420/23906166.v1
title: <b>CARLA Website files archive</b>

description: The zip file contains all the files from the CARLA project website, perserved here in case of future changes to the University of Manchester project website hosting protocols. To recreate the website in navigable form, download the zip file, unpack it into a folder on a hard drive or external drive (e.g. USB). In the folder, click on "index.html"; this will open a page in your browser with some links. Click on "CARLA".This is the website of the project "Cultures of Anti-Racism in Latin America" (CARLA). This was a three-year project (January 2020 to May 2023) awarded a £1million grant from the Arts and Humanities Research Council (UK) to explore how artists in Argentina, Brazil and Colombia address racial diversity in their work and how they use their art to challenge racism. The project was based in the University of Manchester but research teams focused on each country brought together senior and junior, UK-based and Latin American researchers in the social sciences and arts to work with a range of artists and performers to explore diverse practices, including for example Indigenous literatures, visual arts and cinema in Brazil, hip-hop music in Brazil and Colombia, Afro-Colombian art and an Indigenous-Black organisation that uses performance as a pedagogical tool, and street dance and commercial music forms alongside literature and political art in Argentina. Project researchers worked closely with artists and performers and collaborated with them in project workshops, which also had a public-facing component.The website gives details of the <b>project team members</b>, in several categories:Project Director and Co-Investigators based at the University of ManchesterPostdoctoral Researchers employed at the University of Manchester for the duration of the projectCo-Investigators based in Latin American universities and named in the research bidCountry Advisors based in Latin America and also named in the research bidResearch Assistants based in Latin America and contracted on a temporary basisAn International Advisor, based in the UKThe website also gives details of all <b>the artists</b> with whom we collaborated:In Argentina:Teatro en SepiaGrupo De Teatro Mapuche El KatangoIdentidad MarrónEskina QomIn Brazil:Denilson BaniwaDaiara TukanoNaine TerenaJaider EsbellKunumi MCIn Colombia:Corporación de Danza Afro Colombiana Contemporánea SankofaMargarita Ariza AguilarAshanti DinahPedro Blas Julio RomeroLa Corporación Afrocolombiana de Desarrollo Social y Cultural – CARABANTÚWilson BorjaLas Emperadoras de la ChampetaThe website also hosts <b>a blog</b> and has links to the project's YouTube channel and its online exhibition.
DOI: 10.17632/75vnsc24wk
title: Statistical Shape Modeling of Nulliparous, Pregnant, and Parous Female Pelvic Floor Muscle Complexes

description: This data and associated research hypotheses, findings, and interpretations are described in detail in the associated/linked article. Briefly, we aimed to quantify pelvic floor muscle complex (PFMC) shape variation and compare the shapes of nulliparous (have never given birth), late pregnant (currently in the 3rd trimester at the time of imaging), and parous (have given birth but are not currently pregnant) women via statistical shape modeling (SSM). We hypothesized that late pregnant PFMCs would significantly differ from those of nulliparous and parous women. We also expected the nulliparous and parous shapes to differ, which would support the existence of long-term shape alterations following pregnancy and childbirth. PFMCs were segmented from pelvic MRIs of women age 20-49 collected retrospectively. PFMC segmentations included the coccygeus, levator ani, and superficial perineal muscles, the external anal sphincter, and surrounding connective tissues (the perineal body, perineal membrane, and annococcygeal ligament) and were segmented as one continuous structure. In total, 48 PFMCs were included in the shape analysis: 17 nulliparous, 14 late pregnant, and 17 parous PFMCs. A major step of a SSM is a principal component (PC) analysis, which outputs modes of variations (or PCs) each composed of an eigenvector and eigenvalue. PC scores are the projections of patient-specific data onto those eigenvectors and describe where each shape lies (i.e., how near to or far from the mean) along mode of variation. This statistical shape model had 7 significant modes of variation that described 34.2%, 18.1%, 6.2%, 5.5%, 4.7%, 3.6%, and 3.0% of the total shape variance. The average shapes were generated by averaging the PC scores across each of the 7 significant modes and inputting those scores back into the shape model. Average refers to the overall average, while the other shapes are group averages. While only 7 modes of variation were significant, 47 were generated. The PC scores file includes PC scores from all modes, but only the first 7 should be used to recreate this data. The first 3 modes in particular highlight significant differences between these 3 patient groups and are discussed extensively and visualized in the associated/linked article. It should be noted that while these differences are subtle (small differences involving many mesh vertices), they are statistically significant. Roughly 25% of the total shape variance corresponded with significant differences between nulliparous, late pregnant, and parous PFMCs, while an additional 34% describes significant differences between nulliparous and late pregnant PFMCs. Overall, the late pregnant group was the most distinct of the 3 patient groups, with many structures being in a relatively more inferior/posterior position and/or wider in late pregnant compared to nulliparous and parous women.
DOI: 10.6084/m9.figshare.3556902.v1
title: Appendix E. Coefficients table for distance moved with wingspan and wing shape as wing morphology traits and adult feeding, larval feeding guild, and forest affinity as life-history traits.

description: Coefficients table for distance moved with wingspan and wing shape as wing morphology traits and adult feeding, larval feeding guild, and forest affinity as life-history traits.
DOI: 10.17632/xp2np983wc
title: Code used in "ESG: A Panacea for Market Power?" published in Journal of Financial Economics

description: Numerical calculation files

Both files are Matlab files

capitulation: implements numerical analysis described in Online Appendix G, "Examples of capitulation and deterrence in ESG competition" 

Ncompstatv2: implements the numerical calculation referenced in Online Appendix J, "Comparative static with respect to number of firms N," and produces Figure J.1
DOI: 10.6084/m9.figshare.21436062.v1
title: Data for "Both Direction and Degree of Handedness as Influential Factors in Rumination"

description: The data that support the findings of the study of Bahari and Hasani (2023;https://doi.org/10.1080/1357650X.2023.2250078) are openly available here.
DOI: 10.6084/m9.figshare.8868410.v2
title: Long term behavioural dataset exploring influence of perceived predation risk, and factors associated with risk, on the spatial distribution of samango monkey behaviour

description: This dataset represents a long-term behavioural dataset on two samango monkey groups at Lajuma Research Centre, in the Soutpansberg Mountains, South Africa (2012 - 2016). The dataset has been subsetted to only include adult females to remove any observer bias or age-sex class bias.This dataset represents a long-term behavioural dataset on two samango monkey groups at Lajuma Research Centre, in the Soutpansberg Mountains, South Africa (2012 - 2016). The dataset has been subsetted to only include adult females to remove any observer bias or age-sex class bias. Data was analysed using generalised linear mixed effects models.
DOI: 10.17632/nmpz7g752t
title: Fertility evolution in the inter-row topsoil of two Valencian citrus orchards under bare-kept and straw-mulched treatments throughout 2019-2021 – A dataset  

description: Dataset about measurements on thirteen properties that help characterize the physical, chemical and biological fertility in the top layer of inter-row soils in Valencian (Eastern Spain) citrus orchards subjected to two treatments: bare-kept and straw-mulched, during 2019-2021. The properties are: i) daily average temperature (Tm), daily maximum temperature (Tx) and daily minimum temperature (Tn) at 5-10 cm depth measured with the 5TM (METER Group, Inc., Pullman, Washington, USA) sensor in ºC, ii) daily rainfall measured with a raingauge in mm, iii) daily average water content (θm), daily maximum water content (θx) and daily minimum water content (θn) at 5-10 cm depth measured with the same 5TM sensor in m m-1, iv) surface saturated hydraulic conductivity (Ks) measured with a single ring infiltrometer in mm h-1, v) bulk density at 0-5 cm depth (BD) measured with a volumetric sampler in g cm-3, vi)  mass fraction of roots at 0-5 cm depth (wroots) measured with a volumetric sampler in mg g-1, vii) dehydrogenase  activity at 0-20 cm depth (DHA) in nmol g-1 h-1, viii) β-D-glucosidase activity at 0-20 cm depth (GLA) in μmol g-1 h-1, ix) surface emission of CO2 carbon (EC) in kg ha-1 h-1, x) organic carbon on a dry-weight basis (SOC) in percentage, xi) Kjeldahl nitrogen on a  dry-weight basis (N) in percentage, xii) exchangeable potassium (K) in /meq (100 g)-1 and xiii) available phosphorus according to the Olsen’s extraction in mg kg-1. The data are arranged into thirteen tables, one per datum. In every table information about Site, which can be Paiporta or Sueca, Treatment, which can be Bare or Mulching, subplot and repetition (Sub-Rep) and sampling or measurement Date is provided alongside the property value. The data obtaining is reported in Visconti et al. (2023). The data can be used to understand the effects two contrasting inter-row soil managements, namely, bare and straw mulching have on fertility attributes under the conditions of these two contrasting, though representative, Valencia coastal plain citrus orchards. Additionally these data can be used to simulate along time the organic carbon stock evolution under these two treatments. 

Reference: 

Visconti, F., Peiró, E., Pesce, S., Balugani, E., Baixauli, C., de Paz, J.M. 2023. Straw mulching increases fertility and organic carbon in the inter-row topsoil of Mediterranean citrus orchards. Biology and Fertility of Soils (under review).
DOI: 10.6084/m9.figshare.14919888.v1
title: Thomas Fire in situ data.xlsx

description: Organic geochemical data for seawater collected at each sampling location (station) and depth within the Santa Barbara Channel during the Thomas Fire. Quantitative measurements include whole water concentrations of dissolved organic carbon as recovered by solid phase extraction (SPE-DOC), dissolved black carbon (DBC), benzenehexacarboxylic acid (B6CA), and benzenepentacarboxylic acid (B5CA). Qualitative measurements include the ratio of DBC:SPE-DOC, the ratio of B6CA:B5CA, and the stable carbon isotopic (δ<sup>13</sup>C) values of SPE-DOC (SD = 0.09‰), B6CA (SD = 0.28‰), and B5CA (SD = 0.45‰).
DOI: 10.6084/m9.figshare.23714043.v1
title: Love in Scopus Database

description: More than ten thousand of references collected from Scopus academic research database, with 41 fields, with characteristic of each reference, such as: title, authors, number of citations, year of publication, journal, among others. The data was worked with R programming for statistical analysis and clustering.
DOI: 10.6084/m9.figshare.28104782.v2
title: Surgical LAparoscopic Motions

description: Laparoscopic surgery has been widely used in various surgical fields due to its minimally invasive and rapid recovery benefits. However, it requires surgeons to have exceptional technical expertise to overcome challenges such as limited surgical space, restricted visual feedback, and the need for high precision. The rapid development of computer vision and deep learning in surgical action recognition provides essential technical support for improving surgical navigation, training, and postoperative evaluation. Despite this progress, existing publicly available datasets have limited scale, high homogeneity, and inconsistent labeling quality, making it challenging to meet the needs of deep learning models. To address the above issues, we developed the dataset (Surgical LAparoscopic Motions), which encompasses various surgical types. The dataset includes annotations for seven key actions: Abdominal Entry, Use Clip, Hook Cut, Suturing, Panoramic View, Local Panoramic View, and Suction. Experienced medical experts meticulously reviewed the annotations to ensure high quality and clinical accuracy. This dataset aims to promote the development of laparoscopic surgical action recognition and artificial intelligence-driven surgery, supporting intelligent surgical robots and surgical automation.
DOI: 10.17632/c8bntsrx8c
title: Data for: Code Smells and Refactoring: A Tertiary Systematic Review of Challenges and Observations

description: shared online replication package, containing all artifacts - documents, spreadsheets - used during the research
DOI: 10.6084/m9.figshare.12401309.v1
title: Zero coupling between the players

description: raw data of the 16 violin players playing with zero coupling between them - verifying that the players cannot hear or see each other.
DOI: 10.6084/m9.figshare.26928442.v1
title: <b>A raster-based multi-objective spatial optimization framework for offshore wind farm site-prospecting</b>

description: Planning an offshore wind project is considered a highly complex and multivariable task since it involves controversial objectives and constraints to be considered.<b> </b>Hence, compactness and contiguity are indispensable properties<b> </b>in spatial modelling for Renewable Energy Sources (RES) planning processes.<b> </b>The proposed methodology demonstrates the development of a raster-based spatial optimization model for future Offshore Wind Farm (OWF) site-prospecting multi-objective optimization in terms of the simulated Annual Energy Production (AEP), Wind Power Variability (WPV) and the Depth Profile (DP), towards an integer mathematical programming approach.
DOI: 10.6084/m9.figshare.7392776.v1
title: Supplementary Material for: L-Carnitine Supplementation Increases Trimethylamine-N-Oxide but not Markers of Atherosclerosis in Healthy Aged Women

description: <b><i>Background:</i></b> L-carnitine can be metabolized to trimethylamine N-oxide (TMAO), a molecule that promotes atherogenesis through its interaction with macrophages and lipid metabolism. <b><i>Objective:</i></b> The aim of the present study was to assess whether L-carnitine supplementation may promote changes in selected serum biomarkers of atherosclerosis. <b><i>Methods:</i></b> Before the start, in the mid-point and after completing the 24-weeks supplementation protocol, fasting blood samples were taken from the antecubital vein. Plasma free L-carnitine and TMAO were determined by the UPLC/MS/MS method. Serum proteins were determined by the enzyme immunoassay method using commercially available kits. Total cholesterol, high-density lipoprotein-cholesterol, low-density lipoprotein-cholesterol, and triglycerides have been determined using standard automatic analyzer. <b><i>Results:</i></b> L-carnitine supplementation elevated fasting plasma carnitine in the mid-point of our study and it remained increased until the end of supplementation period. Moreover, it induced tenfold increase in plasma TMAO concentration but did not affect serum C-reactive protein, interleukin-6, tumour necrosis factor-α, L-selectin, P-selectin, vascular cell adhesion molecule-1, intercellular adhesion molecule-1 or lipid profile markers. <b><i>Conclusion:</i></b> We demonstrated that ­although oral L-carnitine supplementation significantly ­increased plasma TMAO concentration, no lipid profile changes or other markers of adverse cardiovascular events were detected in healthy aged women over the period of 24 weeks.