cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/cdvc-r444
title: Parkes observations for project P1059 semester 2020APRS_18

description: We propose to observe a sample of 22 pulsars at high Galactic latitudes with the Parkes Ultra-Wideband Low (UWL) receiver. This sample of pulsars does not have flux densities nor polarisation measured before. The goal is to characterise their wideband properties in polarisation, spectrum and interstellar scintillation. Such properties will help us develop imaging pulsar search techniques for future radio continuum surveys, such as with the Australian SKA Pathfinder (ASKAP). Wideband spectrum, polarisation and scintillation of pulsars will also be useful for studies of pulsar radiation mechanism and interstellar medium at high Galactic latitudes.
DOI: 10.15785/sbgrid/982
title: X-Ray Diffraction data from InlB392 (Listeria monocytogenes InlB (internalin B), residues 36-392), source of 7PV9 structure

description: native data
description: XDS.INP file used for processing is provided as template. Only images 1200 to 3600 were used for indexing and integration.
DOI: 10.5281/zenodo.5567856
title: ESMAC Diags data

description: This file includes all preprocessed data for <strong>version 2.1 </strong>of Earth System Model (ESM) aerosol-cloud diagnostics package (<strong>ESMAC Diags</strong>) that facilitate routine evaluation of aerosols, clouds and aerosol-cloud interactions simulated by the Department of Energy’s (DOE) Energy Exascale Earth System Model (E3SM). It also includes preprocessed E3SM output for test evaluation.
description: Work is supported by the Enabling Aerosol-cloud interactions at GLobal convection-permitting scalES (EAGLES) project (74358), funded by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research, Earth System Model Development (ESMD) program area.
DOI: 10.15785/sbgrid/983
title: X-Ray Diffraction data from InlB392_T332E (Listeria monocytogenes InlB (internalin B), residues 36-392; T332E mutation)), source of 7PV8 structure

description: native data
description: XDS.INP input file used for processing is provided as template.
DOI: 10.5281/zenodo.7545744
title: Data for "Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms"

description: This repository contains the data and external data used by teams in the Kaggle competition "HuBMAP+HPA - Hacking the Human Body" and is part of the paper "Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms". The directories contain: <strong>data.zip:</strong> The training and test data, including metadata, used in the Kaggle competition "HuBMAP + HPA - Hacking the Human Body". <strong>Team_1.zip: </strong>External data used by the first place winning solution. <strong>Team_2.zip: </strong>External data used by the second place winning solution.
DOI: 10.25921/6qe7-9v46
title: EK60-ek5 Water Column Sonar Data Collected During SH1904
DOI: 10.6084/m9.figshare.21266253
title: style-rec-data.tar.gz

description: Email dataset using emails from reallygoodemails.com converted to graph and hypergraph. Eight node classes are extracted: button-style, bg-style-font, text-style, background-style, entire-fragment, word, button-text, and image.
DOI: 10.6084/m9.figshare.21266253.v2
title: style-rec-data.tar.gz

description: Email dataset using emails from reallygoodemails.com converted to graph and hypergraph. Eight node classes are extracted: button-style, bg-style-font, text-style, background-style, entire-fragment, word, button-text, and image.
DOI: 10.6084/m9.figshare.21266253.v1
title: style-rec-data.tar.gz

description: Email dataset using emails from reallygoodemails.com converted to graph and hypergraph. Eight node classes are extracted: button-style, bg-style-font, text-style, background-style, entire-fragment, word, button-text, and image.
DOI: 10.15480/336.4846
title: Example Potentials for Spectral Approximation of Generalized Schrödinger Operators via Approximation of Subwords

description: Potentials used for the generation of Figures 2-7 in the article "Spectral Approximation of Generalized Schrödinger Operators via Approximation of Subwords"
DOI: 10.5066/f79c6vj0
title: Data for calculating population, collision and displacement vulnerability among marine birds of the California Current System associated with offshore wind energy infrastructure (ver. 2.0, June 2017)

description: The U.S. Geological Survey, Western Ecological Research Center (USGS-WERC) was requested by the Bureau of Ocean Energy Management (BOEM) to create a database for marine birds that would allow quantification and species ranking regarding vulnerability to offshore wind energy infrastructure (OWEI). This was needed so that resource managers could evaluate potential impacts associated with siting and construction of OWEI within the California Current System (CCS) section of the Pacific Offshore Continental Shelf, including California, Oregon, and Washington. Along with its accompanying Open File Report (OFR), this comprehensive database can be used (and modified or updated) to quantify marine bird vulnerability to OWEIs in the CCS at the population level. For 81 marine bird species present in the CCS, we generated numeric scores to represent vulnerability of collision and displacement associated with potential OWEI. The metrics used to produce these scores includes global population size, proportion of the population in the CCS, threat status, adult survival, breeding and feeding score, annual occurrence in the CCS, nocturnal and diurnal flight activity, macro-avoidance behavior, flight height, and habitat flexibility can be updated and adjusted as new data become available. The scoring methodology was peer-reviewed to evaluate if the metrics identified and the values generated were appropriate for each species considered. The numeric vulnerability scores in this database can readily be applied to areas in the CCS with known species distributions and where offshore renewable energy development is being considered. We hope that this information can be used to assist meaningful planning decisions that will impact seabird conservation.
DOI: 10.5281/zenodo.7545792
title: Trained Models for "Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms"

description: This repository contains the trained model weights for the baseline model and the winning solutions in the Kaggle competition "HuBMAP+HPA - Hacking the Human Body", and is part of the paper "Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms". The directory contains: <strong>trained_model_1_weights.zip: </strong>Trained model weights for first place solution (Team 1). <strong>trained_model_2_weights.zip:</strong> Trained model weights for second place solution (Team 2). <strong>trained_model_3_weights.zip: </strong>Trained model weights for third place solution (Team 3). <strong>trained_model_weights_baseline.zip:</strong> Trained model weights for the baseline model.
DOI: 10.5517/ccdc.csd.cc2c46zq
title: CCDC 2178803: Experimental Crystal Structure Determination

description: Related Article: Bingbin Tan, Wenjing Ding, Yu Yin, Kui Xu, Ying Yin, Xi Chen, Zhengxi Huang, Lamei Wu, Jonathan L. Sessler, Zhan Zhang|2022|Chem.Commun.|59|708|doi:10.1039/D2CC05604F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5zg0
title: CCDC 2180492: Experimental Crystal Structure Determination

description: Related Article: Weronika Z. Michalska, Nathan R. Halcovitch, Susannah C. Coote|2022|Chem.Commun.|59|784|doi:10.1039/D2CC06459F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnh5q
title: CCDC 2194433: Experimental Crystal Structure Determination

description: Related Article: Xiushang Xu, Amy L. Vonder Haar, Rengo Yoshioka, Qizheng Zhang, Serhii Vasylevskyi, Andrew J. Musser, Akimitsu Narita|2022|Chem.Commun.|59|720|doi:10.1039/D2CC05369A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d49lg
title: CCDC 2208675: Experimental Crystal Structure Determination

description: Related Article: F. Knoch, M. Lemke, H. Kisch|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4c53
title: CCDC 2208724: Experimental Crystal Structure Determination

description: Related Article: Dan Liu, Jing Sun, Qiu Sun, Chao-Guo Yan|2022|Org.Chem.Front.|10|540|doi:10.1039/D2QO01771G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4c64
title: CCDC 2208725: Experimental Crystal Structure Determination

description: Related Article: Dan Liu, Jing Sun, Qiu Sun, Chao-Guo Yan|2022|Org.Chem.Front.|10|540|doi:10.1039/D2QO01771G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4c75
title: CCDC 2208726: Experimental Crystal Structure Determination

description: Related Article: Dan Liu, Jing Sun, Qiu Sun, Chao-Guo Yan|2022|Org.Chem.Front.|10|540|doi:10.1039/D2QO01771G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4c86
title: CCDC 2208727: Experimental Crystal Structure Determination

description: Related Article: Dan Liu, Jing Sun, Qiu Sun, Chao-Guo Yan|2022|Org.Chem.Front.|10|540|doi:10.1039/D2QO01771G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4c97
title: CCDC 2208728: Experimental Crystal Structure Determination

description: Related Article: Dan Liu, Jing Sun, Qiu Sun, Chao-Guo Yan|2022|Org.Chem.Front.|10|540|doi:10.1039/D2QO01771G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4cb8
title: CCDC 2208729: Experimental Crystal Structure Determination

description: Related Article: Dan Liu, Jing Sun, Qiu Sun, Chao-Guo Yan|2022|Org.Chem.Front.|10|540|doi:10.1039/D2QO01771G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7303/syn50900334
title: Segmental motor recovery after cervical spinal cord injury relates to density and integrity of corticospinal tract projections
DOI: 10.5281/zenodo.7545838
title: Gradients 4 - TN397 - HPLC - CTD

description: Cruise Name: Gradients 4 , TN397 Vessel: R/V Thompson Funding: Simons Collaboration on Ocean Processes and Ecology (SCOPE) Dataset description: This dataset was collected on the R/V Thompson during the Gradients IV cruise which departed from San Diego, CA and ended in Honolulu, HI. A transect was performed on the 140 degree longitude line from roughly 19 degrees N to 2.5 degrees S before heading to Honolulu. Samples were processed to detect and quantify phytoplankton pigments using a modified version of the high-performance liquid chromatography (HPLC) method of Wright et al. (1991) as described by Bidigare et al. (2005). HPLC samples were collected from CTD niskin bottles and filtered onto Whatman GF/F filters and stored at -80°C until analysis. Filters were extracted in 100% acetone for 24 h at 4°C. Extracts were processed in reverse-phase on a 250 mm C18 column using a Waters separations module and photodiode detector array. Empower chromatography software was used for integration and pigment quantification. The instrument was calibrated using chlorophyll a from Anacystis nidulans (Sigma USA) and mixed pigment standards were obtained from DHI in Denmark. Timestamps are in UTC time.
DOI: 10.5281/zenodo.7545837
title: Gradients 4 - TN397 - HPLC - CTD

description: Cruise Name: Gradients 4 , TN397 Vessel: R/V Thompson Funding: Simons Collaboration on Ocean Processes and Ecology (SCOPE) Dataset description: This dataset was collected on the R/V Thompson during the Gradients IV cruise which departed from San Diego, CA and ended in Honolulu, HI. A transect was performed on the 140 degree longitude line from roughly 19 degrees N to 2.5 degrees S before heading to Honolulu. Samples were processed to detect and quantify phytoplankton pigments using a modified version of the high-performance liquid chromatography (HPLC) method of Wright et al. (1991) as described by Bidigare et al. (2005). HPLC samples were collected from CTD niskin bottles and filtered onto Whatman GF/F filters and stored at -80°C until analysis. Filters were extracted in 100% acetone for 24 h at 4°C. Extracts were processed in reverse-phase on a 250 mm C18 column using a Waters separations module and photodiode detector array. Empower chromatography software was used for integration and pigment quantification. The instrument was calibrated using chlorophyll a from Anacystis nidulans (Sigma USA) and mixed pigment standards were obtained from DHI in Denmark. Timestamps are in UTC time.
DOI: 10.6084/m9.figshare.21321034
title: A tarsometatarsus from the upper Eocene Na Duong Basin—the first Palaeogene fossil bird from Vietnam

description: Knowledge of the Palaeogene avifauna of East Asia is scarce, and only a few fossils have been described thus far. A tarsometatarsus from the upper Eocene Na Duong Basin represents the first Palaeogene fossil bird from Vietnam. The fossiliferous sediments in the Na Duong Basin originated from an aquatic ecosystem but also yielded terrestrial animal and plant remains suggesting a dense forest habitat surrounding an ancient lake. In accordance, the Na Duong Basin tarsometatarsus is compared with extant aquatic, terrestrial and arboreal bird species, but because of diagenetic compression and fragmentary preservation, it is difficult to classify the bone. Nevertheless, the specimen exhibits a distinctive morphology and is potentially referable to an endemic neognath unknown from other Palaeogene localities outside of Vietnam.
DOI: 10.6084/m9.figshare.21321034.v1
title: A tarsometatarsus from the upper Eocene Na Duong Basin—the first Palaeogene fossil bird from Vietnam

description: Knowledge of the Palaeogene avifauna of East Asia is scarce, and only a few fossils have been described thus far. A tarsometatarsus from the upper Eocene Na Duong Basin represents the first Palaeogene fossil bird from Vietnam. The fossiliferous sediments in the Na Duong Basin originated from an aquatic ecosystem but also yielded terrestrial animal and plant remains suggesting a dense forest habitat surrounding an ancient lake. In accordance, the Na Duong Basin tarsometatarsus is compared with extant aquatic, terrestrial and arboreal bird species, but because of diagenetic compression and fragmentary preservation, it is difficult to classify the bone. Nevertheless, the specimen exhibits a distinctive morphology and is potentially referable to an endemic neognath unknown from other Palaeogene localities outside of Vietnam.
DOI: 10.5281/zenodo.7015932
title: Specimen displacement correction for powder x-ray diffraction in Debye-Scherrer geometry with a flat area detector

description: This is a repository of synchrotron, powder XRD data including area detector images (.tiff) and integrated intensity vs 2theta files (.xye) for an experiment determining a sample displacement correction equation for powder x-ray diffraction in Debye-Scherrer geometry with a flat area detector. The accuracy of this equation and the corresponding corrections were verified by comparing it with corrections based on finding new integration parameters from an internal standard reference material. This work was published in the Journal of Applied Crystallography, the citation is shown below: Hulbert, B. S. & Kriven, W. M. (2023). J. Appl. Cryst. 56. https://doi.org/10.1107/S1600576722011360
DOI: 10.6084/m9.figshare.20346870
title: Instances of the article: "Scheduling personalized study plans considering the stress factor"

description: Instances of the article: "Scheduling personalized study plans considering the stress factor" The educational planning problem generates personalized learning paths for students by scheduling activities necessary to satisfy an expected grade, which minimizes the total duration of activities belonging to this learning path by considering the stress and the student's learning capacity. We propose two scheduling models with two new activity duration functions incorporating stress and sequence dependence to mimic learning effects. We also propose a metaheuristic to solve real-size instances, which is composed of a greedy randomized adaptive search procedure enhanced by a variable neighborhood search. Experimental results validate the efficiency of our approach. <br>
DOI: 10.6084/m9.figshare.20346870.v1
title: Instances of the article: "Scheduling personalized study plans considering the stress factor"

description: Instances of the article: "Scheduling personalized study plans considering the stress factor" The educational planning problem generates personalized learning paths for students by scheduling activities necessary to satisfy an expected grade, which minimizes the total duration of activities belonging to this learning path by considering the stress and the student's learning capacity. We propose two scheduling models with two new activity duration functions incorporating stress and sequence dependence to mimic learning effects. We also propose a metaheuristic to solve real-size instances, which is composed of a greedy randomized adaptive search procedure enhanced by a variable neighborhood search. Experimental results validate the efficiency of our approach.
DOI: 10.6084/m9.figshare.21913179
title: Old version of: Phylogenomic tree of MAGs isolated from lichen metagenomes

description: Old version of: <br> Supplementary file associated with Tagirdzhanova et al. 2023. A global survey of lichen symbionts from metagenomes <br> Maximum likelihood phylogenetic trees of the MAGs isolated from lichen metagenomes. Both trees are calculated using IQ-TREE and are based on alignments of marker genes (for prokaryotes: 120 marker genes from GTDB-Tk, for eukaryotes: 50 marker genes from EukCC). Include two files: 1. bacterial.treefile 2. eukaryotes.treefile
DOI: 10.6084/m9.figshare.21913179.v2
title: Old version of: Phylogenomic tree of MAGs isolated from lichen metagenomes

description: Old version of: <br> Supplementary file associated with Tagirdzhanova et al. 2023. A global survey of lichen symbionts from metagenomes <br> Maximum likelihood phylogenetic trees of the MAGs isolated from lichen metagenomes. Both trees are calculated using IQ-TREE and are based on alignments of marker genes (for prokaryotes: 120 marker genes from GTDB-Tk, for eukaryotes: 50 marker genes from EukCC). Include two files: 1. bacterial.treefile 2. eukaryotes.treefile
DOI: 10.6084/m9.figshare.21913179.v1
title: Phylogenomic tree of MAGs isolated from lichen metagenomes

description: Supplementary file associated with Tagirdzhanova et al. 2023. A global survey of lichen symbionts from metagenomes <br> Maximum likelihood phylogenetic trees of the MAGs isolated from lichen metagenomes. Both trees are calculated using IQ-TREE and are based on alignments of marker genes (for prokaryotes: 120 marker genes from GTDB-Tk, for eukaryotes: 50 marker genes from EukCC). Include two files: 1. bacterial.treefile 2. eukaryotes.treefile
DOI: 10.6084/m9.figshare.21913170
title: Phylogenomic tree of Rhizobiales bacteria

description: Supplementary file associated with Tagirdzhanova et al. 2023. A global survey of lichen symbionts from metagenomes <br> Maximum likelihood phylogenetic tree of Rhizobiales. The tree includes published genomes of Rhizobiales and Rhizobiales MAGs derived from lichen metagenomes (indicated in red). We generated the alignment of 120 marker genes using GTDB-Tk, and calculated the tree using IQ-TREE. Includes two files: 1. rhizobiales.contree: treefile in Newick format 2. rhizobiales_annotated_tree.svg: annotated tree showing the taxonomic assignments of the genomes and presence/absence of genes related to nitrogen fixing and C1 metabolism