cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fd6v9s
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "InstitutionCode is one of (usnm, fishbase)",
 "TaxonKey is Benitochromis ufermanni Lamboj, 2001"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132459-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqhkhk
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004969-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njnnf0
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 0 records from 18734 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000446-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4b8rv
title: Occurrence Download

description: A dataset containing 803 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abramis brama",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1965",
 "Year is less than or equal to 1969"
 ]
}

 The dataset includes 803 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080405-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7924/r49w0qv35
title: Data from: Granuloma Dual RNA-Seq Reveals Composite Transcriptional Programs Driven by Neutrophils and Necrosis within Tuberculous Granulomas.

description: Mycobacterial granulomas lie at the center of tuberculosis (TB) pathogenesis and represent a unique niche where infecting bacteria survive in nutrient-restricted conditions and in the face of a host immune response. The granuloma’s necrotic core, where bacteria reside extracellularly in humans, is difficult to assess in many experimentally tractable models. Here, using necrotic mycobacterial granulomas in adult zebrafish, we develop dual RNAseq across different host genotypes to identify the transcriptional alterations that enable bacteria to survive within this key microenvironment. Using pharmacological and genetic interventions, we find that neutrophils within mature, necrotic granulomas promote bacterial growth, in part through upregulation of the bacterial devR regulon. We identify conserved suites of bacterial transcriptional programs induced only in the context of this unique necrotic extracellular niche, including bacterial modules related to K+ transport and rpf genes. Analysis of Mycobacterium tuberculosis strains across diverse lineages and human populations suggests that granuloma-specific transcriptional modules are targets for bacterial genetic adaptation in the context of human infection.
DOI: 10.15468/dl.eaj45b
title: Occurrence Download

description: A dataset containing 14766447 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Ecuador"
 ]
}

 The dataset includes 14766447 records from 2688 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080345-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57702/gs1dwdr9
title: Herbal Medicine Origin Classification

description: The dataset used for classifying herbal medicine origins by temporal and spectral data mining of electronic nose.
DOI: 10.13145/bacdive173876.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173877.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173877.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/i43e057v
title: RTE

description: The RTE dataset is a reading comprehension dataset.
DOI: 10.13145/bacdive173878.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173878.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.vk8mq6
title: Occurrence Download

description: A dataset containing 73287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Falco peregrinus, Falco subbuteo, Falco columbarius, Falco amurensis, Falco tinnunculus, Microhierax melanoleucus, Alcedo hercules, Halcyon smyrnensis, Merops viridis, Merops philippinus, Harpactes erythrocephalus, Tyto longimembris, Asio flammeus, Asio otus, Ninox japonica, Glaucidium cuculoides, Glaucidium brodiei, Strix aluco, Strix leptogrammica, Ketupa flavipes, Bubo bubo, Ketupa zeylonensis, Otus sunia, Otus lettia, Otus spilocephalus)",
 "Year 1990-2025"
 ]
}

 The dataset includes 73287 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079545-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive173879.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173879.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/qryqs4fn
title: Simultaneous Move Games via Equilibrium Approximation

description: The dataset used in the paper is a stochastic game, specifically a simultaneous-move game, with multiple agents and a finite horizon.
DOI: 10.13145/bacdive173880.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173880.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173881.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173881.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173882.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/shei2d6l
title: VVT

description: The VVT dataset is a collection of product garment images and corresponding videos.
DOI: 10.13145/bacdive173882.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173883.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173883.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/bkabl6qg
title: SMARTPASTE

description: The SMARTPASTE task is a challenge for machine learning modeling of source code, that requires to learn (some) semantics of programs.
DOI: 10.13145/bacdive173884.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173884.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/6474bxfn
title: Teasing out missing reactions in genome-scale metabolic networks through deep learning

description: The dataset is used for teasing out missing reactions in genome-scale metabolic networks through deep learning.
DOI: 10.13145/bacdive173885.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173885.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/i43374wb
title: Skin Lesion Analysis toward Melanoma Detection

description: The dataset contains skin lesion images with annotated lesions.
DOI: 10.57702/8m9860d2
title: ANALYSING DISCRETE SELF SUPERVISED SPEECH REPRESENTATION FOR SPOKEN LANGUAGE MODELING

description: This work profoundly analyzes discrete self-supervised speech representations (units) through the eyes of Generative Spoken Language Modeling (GSLM).
DOI: 10.13145/bacdive173886.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173886.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173887.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173887.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173888.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173888.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/0eoia3c9
title: Learning to Infer User Hidden States for Online Sequential Advertising

description: The dataset used in the paper is a large-scale industrial offline and online experiments dataset.
DOI: 10.13145/bacdive173889.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/yyb5xgnm
title: Bach Chorales

description: The Bach Chorales dataset is used to evaluate the quality of fake samples generated with the Generative Adversarial Networks framework.
DOI: 10.13145/bacdive173889.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173890.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173890.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.5sxtad
title: Occurrence Download

description: A dataset containing 73781 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum elaeagnifolium"
 ]
}

 The dataset includes 73781 records from 393 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079540-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14909794
title: SOPA and SIMPA: Normalized single sample integrated multiomics pathway analysis of tumor heterogeneity in solid cancers

description: This repository contains all raw data obtained from The Cancer Genome Atlas, through the custom search criteria used in the single-omic single-sample pathway anaylsis pipeline (SOPA) and its integrated multiomics extension, SIMPA.

.rar files:

CNV.rar: Contains copy number variation data.

RNAseq.rar: Contains transcriptomics data.

Meth.rar: Contains DNA methylation data.

SOPA_SIMPA_res.rar: Contains results for SOPA and SIMPA obtained through running the pipeline on the rankings obtained from the custom ranking metrics calculated from the raw data.

Datasets.rar: Contains various results from the analyses made for SOPA/ SIMPA validation and testing. Each of these files was generated from the jupyter notebooks in the linked GitHub repository. The results are as follows:





    clin.csv:

    - contains clinical information for the integrated multiomics population


    p2preinteg_raw_rnaseq_counts.csv:

    - raw counts for differential expression analysis pre-alignment


    p2preinteg_tpm_rnaseq_counts.csv:

    - tpm counts pre-alignment


    p2preinteg_cnv_counts.csv:

    - CNVs pre-alignment pre-imputation


    p2preinteg_cnvs.csv:

    - CNVs pre-alignment post-imputation


    p2preinteg_mcounts.csv:

    - DNAm beta values sites pre-alignment pre-imputation


    p2preinteg_dnam_sites.csv:

    - DNAm beta values sites pre-alignment post-imputation


    p2preinteg_dnam_dma.csv:

    - DNAm OLS regression results for weighted average of gene methylation


    p2preinteg_dnam_genes.csv:

    - DNAm beta values genes pre-alignment post-imputation


    p2postinteg_genename_ensembleid_template.csv:

    - contains annotations for gene names and ensemble ids for integrated data


    p2postinteg_cnvs_template.csv:

    - contains annotations for gene names and ensemble ids, as well as for chromosome location, start location, and end location for each gene


    p2postinteg_raw_rnaseq_counts.csv:

    - raw counts for differential expression analysis post-alignment


    p2postinteg_tpm_rnaseq_counts.csv:

    - TPM counts for SOPA post-alignment


    p2postinteg_cnvs.csv:

    - CNVs post-alignment


    p2postinteg_dnam_genes.csv:

    - DNAm beta values genes post-alignment


    p2postinteg_rnaseq_dea.csv:

    - results of differential expression analysis using log2FC


    p2postinteg_cnv_da.csv:

    - results of mutation frequency and significance using Fisher's Exact


    p2postinteg_dnam_dma.csv:

    - results of DNAm differential methylation analysis using odds least square regression
DOI: 10.57702/l1beg7xg
title: Microsoft Voxelized Upper Bodies

description: Point clouds are 3D point sets containing both geometry coordinates and associated attributes, which can describe scenes correctly and stereoscopically. Recently, point clouds have been increasingly applied to multimedia industries with immersion, interaction, and realism requirements.
DOI: 10.13145/bacdive173891.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/7tljdwqz
title: EGOODS

description: A large native one-to-many text dataset for text generation tasks, constructed to accelerate the research of diverse text generation.
DOI: 10.13145/bacdive173891.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173892.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173892.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173893.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173893.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/1lzofuul
title: J-resonance NMR Database

description: The J-resonance NMR database, a collection of NMR spectra for various compounds, used for validation of the proposed model.
DOI: 10.13145/bacdive173894.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173894.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173895.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/o000ws0p
title: CIFAR-10 Wavelet Coefficients

description: The dataset used in this paper is the 3D Daubechies-1 wavelet coefficients of the CIFAR-10 dataset.
DOI: 10.13145/bacdive173895.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173896.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173896.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/qiyzjytl
title: Book dataset

description: The Book dataset is part of the Amazon Product Data in the "book" category. There are 603,668 users, 367,982 items, and 8,898,041 user behaviors in total.
DOI: 10.13145/bacdive173897.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.uqmvkr
title: Occurrence Download

description: A dataset containing 432 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guinea",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Charadriidae",
 "Year 2002-2025"
 ]
}

 The dataset includes 432 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079586-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive173897.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/7vgyl5kk
title: MSCMRseg dataset

description: The MSCMRseg dataset consists of images from 45 patients with cardiomyopathy and the gold standard segmentation of LV, MYO and RV.
DOI: 10.13145/bacdive173898.20241212.9.2
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive173898.20251217.10
title: Bacillus sphaericus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.3535/tzq-8hr-5va
title: Coenobita scaevola (Forskål, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g06-qsx-50w
title: Glyphocrangon atlantica Chace, 1939

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s6d-fe7-6zw
title: Coenobita rugosus H. Milne-Edwards, 1837

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/efb-jx9-bvd
title: Glyphocrangon haematonotus Holthuis, 1971

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vg5-hlr-96s
title: Eduarctus martensii (Pfeffer, 1881)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/efc-ryb-jg9
title: Elephantis jaggeri Klotz & de Grave, 2015

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ehm-bzh-3tc
title: Aratus pisonii (H. Milne Edwards, 1837)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y9v-9cp-lnv
title: Glyphocrangon aculeata A. Milne-Edwards, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nvf-67s-61l
title: Thor spinosus Boone, 1935

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tsa-lpe-hhv
title: Macrobrachium amazonicum (Heller, 1862)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d3q-2nf-zqy
title: Neogebicula contigua (Bozic & De Saint Laurent, 1972)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.