cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.25t7nk
title: Occurrence Download

description: A dataset containing 2675 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Polycnemum arvense maximum, Polycnemum arvense pinifolium, Polycnemum arvense simplex, Polycnemum majus, Polycnemum majus erectum, Polycnemum majus mediterraneum, Polycnemum majus mediterraneum, Polycnemum majus humilius, Polycnemum majus mediterraneum, Potentilla inclinata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 2675 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007373-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3sv9qd
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Procambarus clarkii",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 310 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007376-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tughkh
title: Occurrence Download

description: A dataset containing 24095 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senna occidentalis"
 ]
}

 The dataset includes 24095 records from 691 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007372-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3f6dy
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidium virginicum",
 "Country is Iceland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007377-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7274/29566127
title: Seven Seals: Primasius of Hadrumetum’s Seven Modes of Scriptural Exegesis

description: In his discussion of Revelation 5:1, Primasius of Hadrumetum includes a long excursus giving a general theory of Scriptural interpretation. The verse describes a scroll “sealed with seven seals” and “written on inside and outside.” Primasius exposits the “seven seals” by outlining seven different modes of Scriptural communication and the writing on the “inside and outside” by distinguishing exoteric and esoteric meanings in the Bible. As examples, Primasius cites numerous interpretations of different Biblical passages, many of which are drawn from earlier authors, especially Augustine. While his interpretations are heavily dependent on patristic sources, the categories that Primasius assembles from them are not attested in earlier sources and this paper argues that they are his own invention, inspired by the text of Revelation. Thus in addition to an interpretation of Revelation, this passage represents an original sixth-century synthesis of patristic ideas of exegesis.
DOI: 10.7274/29566127.v1
title: Seven Seals: Primasius of Hadrumetum’s Seven Modes of Scriptural Exegesis

description: In his discussion of Revelation 5:1, Primasius of Hadrumetum includes a long excursus giving a general theory of Scriptural interpretation. The verse describes a scroll “sealed with seven seals” and “written on inside and outside.” Primasius exposits the “seven seals” by outlining seven different modes of Scriptural communication and the writing on the “inside and outside” by distinguishing exoteric and esoteric meanings in the Bible. As examples, Primasius cites numerous interpretations of different Biblical passages, many of which are drawn from earlier authors, especially Augustine. While his interpretations are heavily dependent on patristic sources, the categories that Primasius assembles from them are not attested in earlier sources and this paper argues that they are his own invention, inspired by the text of Revelation. Thus in addition to an interpretation of Revelation, this passage represents an original sixth-century synthesis of patristic ideas of exegesis.
DOI: 10.15468/dl.5h8hzd
title: Occurrence Download

description: A dataset containing 1134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Procambarus clarkii",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1134 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007381-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z89ffy
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon sequoyah)"
 ]
}

 The dataset includes 267 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007379-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15867214
title: Assay2Mol datasets

description: This dataset contains supplementary files for the manuscript "Assay2Mol: Large Language Model-based Drug Design Using BioAssay Context".

BioAssay embedding

The BioAssay embedding vectorbase is embedded with the OpenAI text-embedding-ada-002 model. We download BioAssay json data from the PubChem FTP site. If you use the embedding vectorbase, please see the PubChem download policies and citation guidelines. The vectorbase is stored with Faiss in the files index.pkl and index.faiss.

The dataset is current as of September 28, 2024.

CrossDocked2020 test set

We provide the CrossDocked2020 test set as test_set.zip with the processed pqr and pdbqt formatted protein structures, making it more convenient for docking. The files are processed with the script from TargetDiff. Please extract the zip file contents to the docking/test_set/ directory of the Assay2Mol GitHub repository. See the CrossDocked2020 dataset and manuscript for more information.
DOI: 10.5281/zenodo.15867215
title: Assay2Mol datasets

description: This dataset contains supplementary files for the manuscript "Assay2Mol: Large Language Model-based Drug Design Using BioAssay Context".

BioAssay embedding

The BioAssay embedding vectorbase is embedded with the OpenAI text-embedding-ada-002 model. We download BioAssay json data from the PubChem FTP site. If you use the embedding vectorbase, please see the PubChem download policies and citation guidelines. The vectorbase is stored with Faiss in the files index.pkl and index.faiss.

The dataset is current as of September 28, 2024.

CrossDocked2020 test set

We provide the CrossDocked2020 test set as test_set.zip with the processed pqr and pdbqt formatted protein structures, making it more convenient for docking. The files are processed with the script from TargetDiff. Please extract the zip file contents to the docking/test_set/ directory of the Assay2Mol GitHub repository. See the CrossDocked2020 dataset and manuscript for more information.
DOI: 10.15468/dl.6yr7b3
title: Occurrence Download

description: A dataset containing 119352 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vicia villosa"
 ]
}

 The dataset includes 119352 records from 1227 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007260-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30365827
title: dbCAN-HGM

description: Database of CAZyme gene clusters (CGCs) in gut microbiomes from diverse human populations.
DOI: 10.6084/m9.figshare.30365827.v1
title: dbCAN-HGM

description: Database of CAZyme gene clusters (CGCs) in gut microbiomes from diverse human populations.
DOI: 10.5281/zenodo.18671120
title: DEVELOPING DIGITAL COMPETENCIES OF PRIMARY SCHOOL TEACHERS THROUGH A GAMIFICATION-BASED APPROACH

description: This article explores the methodology of developing digital competencies of primary school teachers through a gamification-based approach. The study examines the effectiveness of integrating game mechanics such as points, badges, leaderboards, and progress tracking into professional development platforms designed for educators. The research identifies the current level of digital literacy among primary school teachers and proposes a structured gamification model aimed at enhancing their technological skills, motivation, and engagement in the learning process. The findings demonstrate that gamification-based platforms significantly improve teachers' digital competencies, including their ability to use information and communication technologies in the classroom, create digital educational content, and apply innovative teaching methods. The article also presents practical recommendations for implementing gamification strategies in teacher training programs and continuous professional development systems.
DOI: 10.5281/zenodo.18671119
title: DEVELOPING DIGITAL COMPETENCIES OF PRIMARY SCHOOL TEACHERS THROUGH A GAMIFICATION-BASED APPROACH

description: This article explores the methodology of developing digital competencies of primary school teachers through a gamification-based approach. The study examines the effectiveness of integrating game mechanics such as points, badges, leaderboards, and progress tracking into professional development platforms designed for educators. The research identifies the current level of digital literacy among primary school teachers and proposes a structured gamification model aimed at enhancing their technological skills, motivation, and engagement in the learning process. The findings demonstrate that gamification-based platforms significantly improve teachers' digital competencies, including their ability to use information and communication technologies in the classroom, create digital educational content, and apply innovative teaching methods. The article also presents practical recommendations for implementing gamification strategies in teacher training programs and continuous professional development systems.
DOI: 10.3535/c0m-a90-9jb
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6xd-lfk-vgg
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6c8-17v-ncz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v2v-99j-lhe
title: †Strophomenata Williams et al., 1996

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9rs-flj-n5q
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ban-ygp-t85
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/925-7f2-9tf
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/njh-a0z-005
title: Phaulacris Amédégnato & Descamps, 1979

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ame-4bn-ygp
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l8v-4mk-rql
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yh9-cym-elf
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cya-mkl-2q8
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h8a-pwl-t4n
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1hj-rwe-ar5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cdk-f28-pfz
title: Erylus Gray, 1867

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v63-s7j-l5e
title: †Neorylstonia Vasseur, Boivin, Lathuilière, Lazar, Durlet, Martindale, Bodin & Elhmidi, 2019

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/knv-192-s0f
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/st3-eae-pj9
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e7x-m7z-pz9
title: Splonia Signoret, 1891

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mcx-nxs-ke1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/90w-gq7-fvv
title: Caryophyllia (Acanthocyathus) grayi (Milne Edwards & Haime, 1848)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kkh-mba-4tg
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2lg-vfg-4yk
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dfd-tl5-xxh
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nke-rt1-qwy
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n0l-djt-ry2
title: †Leislingites archibaldi (Mojsisovics, 1896)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rth-j6f-rny
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3yn-l17-bh2
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8yc-96r-bt8
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k68-rfd-xdj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p67-0bq-gn6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w2e-q9p-h98
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gb3-kwm-69a
title: †Spirifer Sowerby, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xe7-pk2-bv8
title: Favia De Blainville, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/brw-lnk-gnc
title: Flabellum (Flabellum) Lesson, 1831

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zq1-rta-083
title: Insecta

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a87-bz3-kra
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/drj-apm-77e
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9f9-hxr-cdj
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ye5-9qn-0y2
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4de-d6y-g16
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.60686/t-fsd3949
title: FSD3949 Barometer for Swedish-speaking Finns B12/2023
DOI: 10.3535/qnc-2rp-1hs
title: Crocuta Kaup, 1828

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rxk-c4p-cfs
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q7g-y34-lfw
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v8x-wlm-vlb
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/syf-dg0-t0r
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yjm-6fp-aac
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.60686/t-fsd3951
title: FSD3951 Barometer for Swedish-speaking Finns B14/2023
DOI: 10.15468/dl.4h9fct
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cimex hemipterus"
 ]
}

 The dataset includes 101 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019435-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ab3-bz7-fpt
title: Anthozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cat-1bp-1cm
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8ez-9rk-37h
title: †Favorites Tschigova, 1977

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zns-gsn-f5g
title: Jovites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q63-qpt-f0d
title: Cyathopodium Verrill, 1868

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jxq-eah-xln
title: †Favorites Tschigova, 1977

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xh1-z1j-kke
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fv4-fvl-rhq
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wcg-lal-3bm
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g35-fy7-mra
title: †Spirifer Sowerby, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n2e-czg-2a3
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j5f-0tl-1pn
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.34740/kaggle/dsv/13654264
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.17556558
title: Underwater images collected by a Kite surf in One-Eye, Mauritius - 2019-05-01

description: This dataset was collected by a Kite surf in One-Eye, Mauritius - 2019-05-01. 

            Underwater or aerial images collected by scientists or citizens can have a wide variety of use for science, management, or conservation.
            These images can be annotated and shared to train IA models which can in turn predict the objects on the images.
            We provide a set of tools (hardware and software) to collect marine data, predict species or habitat, and provide maps.

            This dataset is part of larger collection referencing numerous underwater and aerial images Seatizen Altas. 
            Methods, tools and scientific objectives are also described in a dedicated data paper.

            
                
                                       
                
                
 GPS information: 

                No GPS.
            
                    
                

                
            

            
 Generic folder structure 
            
            YYYYMMDD_COUNTRYCODE-optionalplace_device_session-number 
            ├── DCIM :  folder to store videos and photos depending on the media collected. 
            ├── GPS :  folder to store any positioning related file. If any kind of correction is possible on files (e.g. Post-Processed Kinematic thanks to rinex data) then the distinction between device data and base data is made. If, on the other hand, only device position data are present and the files cannot be corrected by post-processing techniques (e.g. gpx files), then the distinction between base and device is not made and the files are placed directly at the root of the GPS folder. 
            │   ├── BASE :  files coming from rtk station or any static positioning instrument. 
            │   └── DEVICE : files coming from the device. 
            ├── METADATA : folder with general information files about the session. 
            ├── PROCESSED_DATA : contain all the folders needed to store the results of the data processing of the current session. 
            │   ├── BATHY :  output folder for bathymetry raw data extracted from mission logs. 
            │   ├── FRAMES :  output folder for georeferenced frames extracted from DCIM videos. 
            │   ├── IA :  destination folder for image recognition predictions. 
            │   └── PHOTOGRAMMETRY :  destination folder for reconstructed models in photogrammetry. 
            └── SENSORS : folder to store files coming from other sources (bathymetry data from the echosounder, log file from the autopilot,  mission plan etc.).       
            

            
 Software 
            All the raw data was processed using our worflow. All predictions were generated by our inference pipeline. You can find all the necessary scripts to download this data in this repository. Enjoy your data with SeatizenDOI!