cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5807922
title: MOESM1 of High-throughput analysis of amino acids in plant materials by single quadrupole mass spectrometry

description: Additional file 1. Table S1. Overview of relative standard deviations (%) separated by amino acid and sample matrix for analyses over 3 days (nÂ =Â 9).
DOI: 10.6084/m9.figshare.5807922.v1
title: MOESM1 of High-throughput analysis of amino acids in plant materials by single quadrupole mass spectrometry

description: Additional file 1. Table S1. Overview of relative standard deviations (%) separated by amino acid and sample matrix for analyses over 3 days (nÂ =Â 9).
DOI: 10.6084/m9.figshare.5807919
title: Additional file 1: Figure S1. of Quantification and kinetics of viral RNA transcripts produced in Orthohantavirus infected cells

description: The nucleotide sequence of the synthetic DNA. The selected sequence (1377 bp) are color coded to show the origin of the sequences in the RNA segments of Puumala Orthohantavirus. The nucleotides 80–326, shown in red letters, originate from the S segment; the black letters indicate the nucleotides 37–438 and 3178–3357 of the M-segment while the blue letters indicate the nucleotides 2640–2736 and 2935–3385 of the L-segment. (PPTM 34 kb)
DOI: 10.6084/m9.figshare.5807919.v1
title: Additional file 1: Figure S1. of Quantification and kinetics of viral RNA transcripts produced in Orthohantavirus infected cells

description: The nucleotide sequence of the synthetic DNA. The selected sequence (1377 bp) are color coded to show the origin of the sequences in the RNA segments of Puumala Orthohantavirus. The nucleotides 80–326, shown in red letters, originate from the S segment; the black letters indicate the nucleotides 37–438 and 3178–3357 of the M-segment while the blue letters indicate the nucleotides 2640–2736 and 2935–3385 of the L-segment. (PPTM 34 kb)
DOI: 10.6084/m9.figshare.12894932
title: Statistical Significance Calculations for Scenarios in Visual Inference

description: <b>turk-studies-summary.csv</b>: Summarized results from three different lineup studies; each line describes aggregated results for a single lineup panel.<br> - study: a string indicating the study the lineup panel was used in; turk4 is Hofmann et al (2012), turk10 is Loy et al. (2016), turk14 is Loy et al. (2017) - param: a string indicating the parameter settings (study specific) used to generate the lineup - test_param: a string indicating a (usually human readable) description of the lineup - pic_id: a numeric ID specific to the lineup - pic_name: the picture name (pictures aren't provided in this repository) - obs_plot_location: the panel of the lineup containing the data or target - response_no: the panel number of the lineup - n: the number of times the panel was selected<br><b>turk6_60_96_1_8.csv</b>: the data necessary to generate the lineup provided in the example section of the paper<br> - vals: the y-values used in boxplot construction - group: the group used to separate values into two boxplots - .sample: the panel the value is included in
DOI: 10.6084/m9.figshare.12894932.v1
title: Statistical Significance Calculations for Scenarios in Visual Inference

description: <b>turk-studies-summary.csv</b>: Summarized results from three different lineup studies; each line describes aggregated results for a single lineup panel.<br> - study: a string indicating the study the lineup panel was used in; turk4 is Hofmann et al (2012), turk10 is Loy et al. (2016), turk14 is Loy et al. (2017) - param: a string indicating the parameter settings (study specific) used to generate the lineup - test_param: a string indicating a (usually human readable) description of the lineup - pic_id: a numeric ID specific to the lineup - pic_name: the picture name (pictures aren't provided in this repository) - obs_plot_location: the panel of the lineup containing the data or target - response_no: the panel number of the lineup - n: the number of times the panel was selected<br><b>turk6_60_96_1_8.csv</b>: the data necessary to generate the lineup provided in the example section of the paper<br> - vals: the y-values used in boxplot construction - group: the group used to separate values into two boxplots - .sample: the panel the value is included in
DOI: 10.6084/m9.figshare.5807766
title: Additional file 1: Table S1. of HERV-W group evolutionary history in non-human primates: characterization of ERV-W orthologs in Catarrhini and related ERV groups in Platyrrhini

description: HERV-W loci in the human reference genome sequence and ERV-W orthologous sequences in non-human Catarrhini primates reference genome sequences. Table S2: ERV-W loci in non-human Catarrhini primate reference genome sequences with a solitary HERV-W LTR at the orthologous human genome position. Table S3: ERV-W loci in non-human Catarrhini primates corresponding to HERV-W-like elements with lesser similarities to HERV17. Table S4: ERV-W loci in non-human Catarrhini primate genome sequences lacking an ortholog in the human reference genome sequence. (XLSX 85Â kb)
DOI: 10.6084/m9.figshare.5807766.v1
title: Additional file 1: Table S1. of HERV-W group evolutionary history in non-human primates: characterization of ERV-W orthologs in Catarrhini and related ERV groups in Platyrrhini

description: HERV-W loci in the human reference genome sequence and ERV-W orthologous sequences in non-human Catarrhini primates reference genome sequences. Table S2: ERV-W loci in non-human Catarrhini primate reference genome sequences with a solitary HERV-W LTR at the orthologous human genome position. Table S3: ERV-W loci in non-human Catarrhini primates corresponding to HERV-W-like elements with lesser similarities to HERV17. Table S4: ERV-W loci in non-human Catarrhini primate genome sequences lacking an ortholog in the human reference genome sequence. (XLSX 85Â kb)
DOI: 10.6084/m9.figshare.5807715
title: Additional file 1: of Oscillometric blood pressure by age and height for non overweight children and adolescents in Lubumbashi, Democratic Republic of Congo

description: Data on Oscillometric Blood Pressure for Non Overweight Children and Adolescents in Lubumbashi. Tabular datasets of this study is presented as an Excel spreadsheet. (XLSX 2513Â kb)
DOI: 10.6084/m9.figshare.5807715.v1
title: Additional file 1: of Oscillometric blood pressure by age and height for non overweight children and adolescents in Lubumbashi, Democratic Republic of Congo

description: Data on Oscillometric Blood Pressure for Non Overweight Children and Adolescents in Lubumbashi. Tabular datasets of this study is presented as an Excel spreadsheet. (XLSX 2513Â kb)
DOI: 10.6084/m9.figshare.5807616
title: Additional file 1: Table S1. of Efficacy and safety of Sofosbuvir-containing regimens in patients co-infected with chronic hepatitis C virus and human immunodeficiency virus: a meta-analysis

description: Baseline characteristics of participants. Table S1 shows the information of selected articles and the baseline characteristics of participants. (XLS 16 kb)
DOI: 10.6084/m9.figshare.5807616.v1
title: Additional file 1: Table S1. of Efficacy and safety of Sofosbuvir-containing regimens in patients co-infected with chronic hepatitis C virus and human immunodeficiency virus: a meta-analysis

description: Baseline characteristics of participants. Table S1 shows the information of selected articles and the baseline characteristics of participants. (XLS 16 kb)
DOI: 10.6084/m9.figshare.5807595
title: Additional file 1: of Gibson Deletion: a novel application of isothermal in vitro recombination

description: The sequences of the oligonucleotides used in this study are reported. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.5807595.v1
title: Additional file 1: of Gibson Deletion: a novel application of isothermal in vitro recombination

description: The sequences of the oligonucleotides used in this study are reported. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.5807511
title: A mobile brain-body imaging dataset recorded during treadmill walking with a brain-computer interface

description: The dataset that accompanies the article with same title on Scientific Data.
DOI: 10.6084/m9.figshare.5807511.v1
title: A mobile brain-body imaging dataset recorded during treadmill walking with a brain-computer interface

description: The dataset that accompanies the article with same title on Scientific Data.
DOI: 10.6084/m9.figshare.5807454
title: Timelapse 7 - raw confocal files

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5807454.v1
title: Timelapse 7 - raw confocal files

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5807454.v3
title: Timelapse 7 - raw confocal files

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5807454.v4
title: Timelapse 7 - raw confocal files

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5807454.v6
title: Timelapse 7 - raw confocal files

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5807454.v5
title: Timelapse 7 - raw confocal files

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5807424
title: Scapular focused interventions to improve shoulder pain and function in adults with subacromial pain: A systematic review and meta-analysis

description: The relationship between subacromial pain syndrome (SAPS) and altered scapular movement has been previously reported. The purpose of this review was to determine the effect of interventions that focus on addressing scapular components to improve shoulder pain, function, shoulder range of motion (ROM), and muscle strength in adults with SAPS. Databases searched in September 2016 were: PubMed, the Cochrane Central Register of Controlled Trials [Central], EMBASE [via Ovid] and PEDro. All studies selected for this review were randomized controlled trials. In total, six studies met the inclusion criteria and were included in the meta-analyses. In adults with SAPS, scapular focused interventions significantly improved pain with activities (MD [95% CI] = −0.88 [−1.19 to −0.58], I<sup>2</sup> 43%) and shoulder function (−11.31 [−17.20 to −5.41] I<sup>2</sup> 65%) in the short term. No between-group difference in shoulder pain and function were found at follow up (4 weeks). A between-group difference in shoulder abduction ROM in the short term only was found (12.71 [7.15 to 18.26]°, I<sup>2</sup> 36%). No between-group difference in flexion ROM, supraspinatus muscle strength, pectoralis minor length or forward shoulder posture were found. In conclusion, in adults with SAPS, scapular focused interventions can improve short-term shoulder pain and function.
DOI: 10.6084/m9.figshare.5807424.v1
title: Scapular focused interventions to improve shoulder pain and function in adults with subacromial pain: A systematic review and meta-analysis

description: The relationship between subacromial pain syndrome (SAPS) and altered scapular movement has been previously reported. The purpose of this review was to determine the effect of interventions that focus on addressing scapular components to improve shoulder pain, function, shoulder range of motion (ROM), and muscle strength in adults with SAPS. Databases searched in September 2016 were: PubMed, the Cochrane Central Register of Controlled Trials [Central], EMBASE [via Ovid] and PEDro. All studies selected for this review were randomized controlled trials. In total, six studies met the inclusion criteria and were included in the meta-analyses. In adults with SAPS, scapular focused interventions significantly improved pain with activities (MD [95% CI] = −0.88 [−1.19 to −0.58], I<sup>2</sup> 43%) and shoulder function (−11.31 [−17.20 to −5.41] I<sup>2</sup> 65%) in the short term. No between-group difference in shoulder pain and function were found at follow up (4 weeks). A between-group difference in shoulder abduction ROM in the short term only was found (12.71 [7.15 to 18.26]°, I<sup>2</sup> 36%). No between-group difference in flexion ROM, supraspinatus muscle strength, pectoralis minor length or forward shoulder posture were found. In conclusion, in adults with SAPS, scapular focused interventions can improve short-term shoulder pain and function.
DOI: 10.6084/m9.figshare.5807421
title: Implementing Prehospital Evidence-Based Guidelines: A Systematic Literature Review

description: <b>Objective</b>: As prehospital research advances, more evidence-based guidelines (EBGs) are implemented into emergency medical services (EMS) practice. However, incomplete or suboptimal prehospital EBG implementation may hinder improvement in patient outcomes. To inform future efforts, this study's objective was to review existing evidence pertaining to prehospital EBG implementation methods. <b>Methods</b>: This study was a systematic literature review and evaluation following the Grading of Recommendations, Assessment, Development, and Evaluation (GRADE) methodology. PubMed, EMBASE, Scopus, and Google Advanced Search were searched without language or publication date filters for articles addressing prehospital EBG implementation. Conference proceedings, textbooks, and non-English articles were excluded. GRADE was applied to the remaining articles independently by three of five study investigators. Study characteristics and salient findings from the included articles are reported. <b>Results</b>: The systematic literature review identified 1,367 articles, with 41 meeting inclusion criteria. Most articles described prehospital EBG implementation (<i>n</i> = 24, 59%), or implementation barriers (<i>n</i> = 13, 32%). Common study designs were statement documents (<i>n</i> = 12, 29%), retrospective cohort studies (<i>n</i> = 12, 29%), and cross-sectional studies (<i>n</i> = 9, 22%). Using GRADE, evidence quality was rated low (<i>n</i> = 18, 44%), or very low (<i>n</i> = 23, 56%). Salient findings from the articles included: (i) EBG adherence and patient outcomes depend upon successful implementation, (ii) published studies generally lack detailed implementation methods, (iii) EBG implementation takes longer than planned (mostly for EMS education), (iv) EMS systems' heterogeneity affects EBG implementation, and (v) multiple barriers limit successful implementation (e.g., financial constraints, equipment purchasing, coordination with hospitals, and regulatory agencies). This review found no direct evidence for best prehospital EBG implementation practices. There were no studies comparing implementation methods or implementation in different prehospital settings (e.g., urban vs. rural, advanced vs. basic life support). <b>Conclusions</b>: While prehospital EBG implementation barriers are well described, there is a paucity of evidence for optimal implementation methods. For scientific advances to reach prehospital patients, EBG development efforts must translate into EMS practice. Future research should consider comparing implementation methodologies in different prehospital settings, with a goal of defining detailed, reproducible best practices.
DOI: 10.6084/m9.figshare.5807421.v1
title: Implementing Prehospital Evidence-Based Guidelines: A Systematic Literature Review

description: <b>Objective</b>: As prehospital research advances, more evidence-based guidelines (EBGs) are implemented into emergency medical services (EMS) practice. However, incomplete or suboptimal prehospital EBG implementation may hinder improvement in patient outcomes. To inform future efforts, this study's objective was to review existing evidence pertaining to prehospital EBG implementation methods. <b>Methods</b>: This study was a systematic literature review and evaluation following the Grading of Recommendations, Assessment, Development, and Evaluation (GRADE) methodology. PubMed, EMBASE, Scopus, and Google Advanced Search were searched without language or publication date filters for articles addressing prehospital EBG implementation. Conference proceedings, textbooks, and non-English articles were excluded. GRADE was applied to the remaining articles independently by three of five study investigators. Study characteristics and salient findings from the included articles are reported. <b>Results</b>: The systematic literature review identified 1,367 articles, with 41 meeting inclusion criteria. Most articles described prehospital EBG implementation (<i>n</i> = 24, 59%), or implementation barriers (<i>n</i> = 13, 32%). Common study designs were statement documents (<i>n</i> = 12, 29%), retrospective cohort studies (<i>n</i> = 12, 29%), and cross-sectional studies (<i>n</i> = 9, 22%). Using GRADE, evidence quality was rated low (<i>n</i> = 18, 44%), or very low (<i>n</i> = 23, 56%). Salient findings from the articles included: (i) EBG adherence and patient outcomes depend upon successful implementation, (ii) published studies generally lack detailed implementation methods, (iii) EBG implementation takes longer than planned (mostly for EMS education), (iv) EMS systems' heterogeneity affects EBG implementation, and (v) multiple barriers limit successful implementation (e.g., financial constraints, equipment purchasing, coordination with hospitals, and regulatory agencies). This review found no direct evidence for best prehospital EBG implementation practices. There were no studies comparing implementation methods or implementation in different prehospital settings (e.g., urban vs. rural, advanced vs. basic life support). <b>Conclusions</b>: While prehospital EBG implementation barriers are well described, there is a paucity of evidence for optimal implementation methods. For scientific advances to reach prehospital patients, EBG development efforts must translate into EMS practice. Future research should consider comparing implementation methodologies in different prehospital settings, with a goal of defining detailed, reproducible best practices.
DOI: 10.6084/m9.figshare.5807409
title: Phase-Amplitude Separation and Modeling of Spherical Trajectories

description: The problems of analysis and modeling of spherical trajectories, that is, continuous longitudinal data on S2, are important in several disciplines. These problems are challenging for two reasons: (1) nonlinear geometry of S2 and (2) the presence of phase variability in given data. This article develops a geometric framework for separating phase variability from given trajectories, leaving only the shape or the amplitude variability. The key idea is to represent each trajectory with a pair of variables, a starting point, and a transported square-root velocity curve (TSRVC), a curve in the tangent (vector) space at the starting point. The space of all such curves forms a vector bundle and the L2 norm, along with the standard Riemannian metric on S2, provides a natural, warping-invariant metric on this vector bundle. This leads to an efficient algorithm for registration of trajectories, that is, phase-amplitude separation, and computational tools, such as clustering, sample means, and principal component analysis (PCA) of the two components separately. It also helps derive simple statistical models of phase-amplitude components of spherical trajectories. This comprehensive framework is demonstrated using two datasets: a set of bird-migration trajectories and a set of hurricane paths in the Atlantic ocean. Supplementary material for this article is available online.
DOI: 10.6084/m9.figshare.5807409.v1
title: Phase-Amplitude Separation and Modeling of Spherical Trajectories

description: The problems of analysis and modeling of spherical trajectories, that is, continuous longitudinal data on S2, are important in several disciplines. These problems are challenging for two reasons: (1) nonlinear geometry of S2 and (2) the presence of phase variability in given data. This article develops a geometric framework for separating phase variability from given trajectories, leaving only the shape or the amplitude variability. The key idea is to represent each trajectory with a pair of variables, a starting point, and a transported square-root velocity curve (TSRVC), a curve in the tangent (vector) space at the starting point. The space of all such curves forms a vector bundle and the L2 norm, along with the standard Riemannian metric on S2, provides a natural, warping-invariant metric on this vector bundle. This leads to an efficient algorithm for registration of trajectories, that is, phase-amplitude separation, and computational tools, such as clustering, sample means, and principal component analysis (PCA) of the two components separately. It also helps derive simple statistical models of phase-amplitude components of spherical trajectories. This comprehensive framework is demonstrated using two datasets: a set of bird-migration trajectories and a set of hurricane paths in the Atlantic ocean. Supplementary material for this article is available online.
DOI: 10.6084/m9.figshare.5807406
title: Taylor's Law Holds for Finite OEIS Integer Sequences and Binomial Coefficients

description: Taylor's law (TL) predicts that the variance and the mean will be related empirically through a power-law function. TL previously has been shown to arise even in the absence of biological, ecological or physical processes. We report here that the mean and variance of 110 finite integer sequences in the On-Line Encyclopedia of Integer Sequences (OEIS) obey TL approximately. We also show that the binomial coefficients on each row of Pascal's triangle obey TL asymptotically. These applications of TL to seemingly unrelated mathematical structures tend to confirm there might be purely statistical, context-independent mechanisms at play. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.5807388
title: Adaptive Bayesian Time–Frequency Analysis of Multivariate Time Series

description: This article introduces a nonparametric approach to multivariate time-varying power spectrum analysis. The procedure adaptively partitions a time series into an unknown number of approximately stationary segments, where some spectral components may remain unchanged across segments, allowing components to evolve differently over time. Local spectra within segments are fit through Whittle likelihood-based penalized spline models of modified Cholesky components, which provide flexible nonparametric estimates that preserve positive definite structures of spectral matrices. The approach is formulated in a Bayesian framework, in which the number and location of partitions are random, and relies on reversible jump Markov chain and Hamiltonian Monte Carlo methods that can adapt to the unknown number of segments and parameters. By averaging over the distribution of partitions, the approach can approximate both abrupt and slowly varying changes in spectral matrices. Empirical performance is evaluated in simulation studies and illustrated through analyses of electroencephalography during sleep and of the El Niño-Southern Oscillation. Supplementary materials for this article are available online.