cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12762674
title: Additional file 1 of Comparative DNA methylome analysis of estrus ewes reveals the complex regulatory pathways of sheep fecundity

description: Additional file 1.
DOI: 10.6084/m9.figshare.12762680.v1
title: Additional file 3 of Comparative DNA methylome analysis of estrus ewes reveals the complex regulatory pathways of sheep fecundity

description: Additional file 3.
DOI: 10.6084/m9.figshare.12762674.v1
title: Additional file 1 of Comparative DNA methylome analysis of estrus ewes reveals the complex regulatory pathways of sheep fecundity

description: Additional file 1.
DOI: 10.6084/m9.figshare.12762677.v1
title: Additional file 2 of Comparative DNA methylome analysis of estrus ewes reveals the complex regulatory pathways of sheep fecundity

description: Additional file 2.
DOI: 10.6084/m9.figshare.12762644
title: Additional file 5 of Influences of claywater and greenwater on the skin microbiome of cultured larval sablefish (Anoplopoma fimbria)

description: Additional file 5 DESeq results and taxonomy of OTUs that are significantly different (p
DOI: 10.6084/m9.figshare.12762641
title: Additional file 4 of Influences of claywater and greenwater on the skin microbiome of cultured larval sablefish (Anoplopoma fimbria)

description: Additional file 4 DESeq results and taxonomy of OTUs that are significantly different (p
DOI: 10.6084/m9.figshare.12762644.v1
title: Additional file 5 of Influences of claywater and greenwater on the skin microbiome of cultured larval sablefish (Anoplopoma fimbria)

description: Additional file 5 DESeq results and taxonomy of OTUs that are significantly different (p
DOI: 10.6084/m9.figshare.12762647
title: Additional file 1 of PM2.5 impairs macrophage functions to exacerbate pneumococcus-induced pulmonary pathogenesis

description: Additional file 1: Figure S1. Deposition of particulate matter in the cytoplasm. RAW264.7 cells were (A) untreated (mock) or (B) treated with 20 μg/ml PM2.5 for 24 h and subjected to light microscopic analysis. Arrows represent macrophages with phagocytosed PM2.5. Scale bars, 5 μm. Figure S2. The body weight and temperature of mice during the experiment. Mice were divided into four groups (10 per group) for the treatments with PBS (mock), PM2.5, pneumococcus (Sp), and PM2.5 + pneumococcus, respectively. The body weights and temperatures of the mice were measured every three days during the experiment. Figure S3. Long-term PM2.5-exposure decreases the expression of CXCR3 and IL-1β in pneumococcus-infected lung tissues. Mice were administered PM2.5 and pneumococcus-infected as described in Fig. 4. Mice were euthanized and lung tissues were subjected to immunohistochemical (IHC) staining with specific antibody against CXCR3 and IL-1β (original magnification: 200×). Magnified images of each cropped area are shown in the lower panel. Scale bars, 100 μm. Figure S4. Involvement of the MAPK and NF-κB signaling pathways in the suppression of pneumococcus-induced nitric oxide production by PM2.5. RAW264.7 cells were pretreated with SB203580 (10 μM), SP000125 (10 μM), or JSH-23 (20 μM) for 1 h, and exposed to PM2.5 (20 μg/ml) for 24 h, followed by pneumococcal infection for 6 h. The nitric oxide concentration was determined using Griess reagent. Statistical significance was evaluated using one-way ANOVA followed by a post-hoc test (*, P
DOI: 10.6084/m9.figshare.12762641.v1
title: Additional file 4 of Influences of claywater and greenwater on the skin microbiome of cultured larval sablefish (Anoplopoma fimbria)

description: Additional file 4 DESeq results and taxonomy of OTUs that are significantly different (p
DOI: 10.6084/m9.figshare.12762647.v1
title: Additional file 1 of PM2.5 impairs macrophage functions to exacerbate pneumococcus-induced pulmonary pathogenesis

description: Additional file 1: Figure S1. Deposition of particulate matter in the cytoplasm. RAW264.7 cells were (A) untreated (mock) or (B) treated with 20 μg/ml PM2.5 for 24 h and subjected to light microscopic analysis. Arrows represent macrophages with phagocytosed PM2.5. Scale bars, 5 μm. Figure S2. The body weight and temperature of mice during the experiment. Mice were divided into four groups (10 per group) for the treatments with PBS (mock), PM2.5, pneumococcus (Sp), and PM2.5 + pneumococcus, respectively. The body weights and temperatures of the mice were measured every three days during the experiment. Figure S3. Long-term PM2.5-exposure decreases the expression of CXCR3 and IL-1β in pneumococcus-infected lung tissues. Mice were administered PM2.5 and pneumococcus-infected as described in Fig. 4. Mice were euthanized and lung tissues were subjected to immunohistochemical (IHC) staining with specific antibody against CXCR3 and IL-1β (original magnification: 200×). Magnified images of each cropped area are shown in the lower panel. Scale bars, 100 μm. Figure S4. Involvement of the MAPK and NF-κB signaling pathways in the suppression of pneumococcus-induced nitric oxide production by PM2.5. RAW264.7 cells were pretreated with SB203580 (10 μM), SP000125 (10 μM), or JSH-23 (20 μM) for 1 h, and exposed to PM2.5 (20 μg/ml) for 24 h, followed by pneumococcal infection for 6 h. The nitric oxide concentration was determined using Griess reagent. Statistical significance was evaluated using one-way ANOVA followed by a post-hoc test (*, P
DOI: 10.6084/m9.figshare.12762602
title: Additional file 3 of KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins

description: Additional file 3: Table S3. test set of ATM kinase including peptides, interactions, and output scores of all softwares.
DOI: 10.6084/m9.figshare.12762605
title: Additional file 4 of KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins

description: Additional file 4: Table S4. test set of CDK2 kinase including peptides, interactions, and output scores of all softwares.
DOI: 10.6084/m9.figshare.12762599
title: Additional file 2 of KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins

description: Additional file 2: Table S2. Evaluation of KSP on PKACA and CDK1 when different number of top-ranked predictions were considered.
DOI: 10.6084/m9.figshare.12762605.v1
title: Additional file 4 of KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins

description: Additional file 4: Table S4. test set of CDK2 kinase including peptides, interactions, and output scores of all softwares.
DOI: 10.6084/m9.figshare.12762599.v1
title: Additional file 2 of KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins

description: Additional file 2: Table S2. Evaluation of KSP on PKACA and CDK1 when different number of top-ranked predictions were considered.
DOI: 10.6084/m9.figshare.12762602.v1
title: Additional file 3 of KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins

description: Additional file 3: Table S3. test set of ATM kinase including peptides, interactions, and output scores of all softwares.
DOI: 10.6084/m9.figshare.12762596
title: Additional file 1 of KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins

description: Additional file 1: Table S1. Kinases information collected in KSP.
DOI: 10.6084/m9.figshare.12762596.v1
title: Additional file 1 of KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins

description: Additional file 1: Table S1. Kinases information collected in KSP.
DOI: 10.6084/m9.figshare.12762473
title: Transcriptome data of different Spatholobus suberectus tissues-1

description: the clean data of RNA-Seq
DOI: 10.6084/m9.figshare.12762464
title: Market research.txt

description: Random data.
DOI: 10.6084/m9.figshare.12762473.v1
title: Transcriptome data of different Spatholobus suberectus tissues-1

description: the clean data of RNA-Seq
DOI: 10.6084/m9.figshare.12762431
title: Mycobiome analysis in fungal infected formalin-fixed and paraffin-embedded tissues for identification of pathogenic fungi: a pilot study - Positive control

description: positive control
DOI: 10.6084/m9.figshare.12762464.v1
title: Market research.txt

description: Random data.
DOI: 10.6084/m9.figshare.12762410
title: Gene database of Sulfolobus acidocaldarius DSM 639

description: <i>Sulfolobus acidocaldarius</i> is a thermophilic archaeon that thrives under acidic environment. Able to oxidize sulphur, the archaeon could grow at temperatures of 55-85 <sup>o</sup>C, with optimal growth at 70-75 <sup>o</sup>C. Potential to grow at thermophilic and acidic environments opens up the microorganism possible use in bioleaching, where microbes secretes metabolites that could help leach useful metals from ores or electronic scrap material. This work sought to provide fundamental information of the genetic repertoire of <i>Sulfolobus acidocaldarius</i> DSM 639 by parsing its annotated genome sequence downloaded from Genbank. Comprising gene name, gene function and gene sequence, the resource should be useful for understanding the metabolic machinery that helps endow <i>S. acidocaldarius</i> the ability to secrete metabolites for use in bioleaching. Additionally, gene sequence information available should also help guide molecular cloning work to heterologously express genes useful in bioleaching in mesophilic hosts such as <i>Escherichia coli</i>.
DOI: 10.6084/m9.figshare.12762431.v1
title: Mycobiome analysis in fungal infected formalin-fixed and paraffin-embedded tissues for identification of pathogenic fungi: a pilot study - Positive control

description: positive control (candida)
DOI: 10.6084/m9.figshare.12762176
title: Analysis of S-PrP by LC-MS/MS - Raw data

description: Analysis of S-PrP by LC-MS/MS - Raw data
DOI: 10.6084/m9.figshare.12762176.v1
title: Analysis of S-PrP by LC-MS/MS - Raw data

description: Analysis of S-PrP by LC-MS/MS - Raw data
DOI: 10.6084/m9.figshare.12762077
title: Data used for the review: Managed aquifer recharge implementation criteria for agricultural and urban sustainability

description: This package includes the representative data used in the paper entitled "Managed aquifer recharge implementation criteria for agricultural and urban sustainability"<br>
DOI: 10.6084/m9.figshare.12762038
title: Supporting material for "Integrative responses of ants to temperature rises"

description: Dataset showing interactions of several factors with the critical thermal maximum and voluntary thermal maximum of leaf cutting ants.<br>
DOI: 10.6084/m9.figshare.12762077.v1
title: Data used for the review: Managed aquifer recharge implementation criteria for agricultural and urban sustainability

description: This package includes the representative data used in the paper entitled "Managed aquifer recharge implementation criteria for agricultural and urban sustainability"<br>
DOI: 10.6084/m9.figshare.12761999
title: Evaluation of Core Concepts Supplement 2

description: Courses offered in undergraduate Physiology curricula at each institution as of 2019. *Courses that were missing data were not included in the calculations.
DOI: 10.6084/m9.figshare.12762038.v1
title: Supporting material for "Integrative responses of ants to temperature rises"

description: Dataset showing interactions of several factors with the critical thermal maximum and voluntary thermal maximum of leaf cutting ants.<br>
DOI: 10.6084/m9.figshare.12761990
title: Evaluation of Core Concepts Supplement 1

description: Program characteristics including summary of institutions, majors, degree type and program size that participated in the core concepts curricular survey.
DOI: 10.6084/m9.figshare.12761990.v1
title: Evaluation of Core Concepts Supplement 1

description: Program characteristics including summary of institutions, majors, degree type and program size that participated in the core concepts curricular survey.
DOI: 10.6084/m9.figshare.12761999.v1
title: Evaluation of Core Concepts Supplement 2

description: Courses offered in undergraduate Physiology curricula at each institution as of 2019. *Courses that were missing data were not included in the calculations.
DOI: 10.6084/m9.figshare.12760202
title: Caribbean Shorebirds eBird Raw Data

description: All data used in this assessment came from the World eBird Basic Dataset (Sullivan et al., 2009; publicly available at ebird.org/data/download). We downloaded the data from eBird on January 21, 2020 and filtered it using the R package ‘Auk’ (Strimas-Mackey, Miller & Hochachka, 2018) to include only records of interest (filtered by country and species). The result was a list of all eBird shorebird records in the insular Caribbean.<br>We filtered to include the following countries:("Jamaica", "Cuba", "The Bahamas", "Haiti", "Dominican Republic", "Antigua and Barbuda", "Dominica", "Saint Lucia", "Saint Vincent and the Grenadines", "Barbados", "Grenada", "Trinidad and Tobago", "Anguilla", "Aruba", "Bahamas", "Caribbean Netherlands", "Cayman Islands", "Guadeloupe", "Martinique", "Sint Maarten", "Saint Kitts and Nevis", "Virgin Islands (British)", "Virgin Islands (U.S.)", "Puerto Rico", "Saint Martin (French part)", "Turks and Caicos Islands", "Curaçao", "Saint Barthélemy", "Montserrat")<br>We filtered to include the following species:("Black-necked Stilt", "American Avocet", "American Oystercatcher", "Black-bellied Plover", "American Golden-Plover", "Pacific Golden-Plover", "Snowy Plover", "Wilson's Plover", "Semipalmated Plover", "Piping Plover", "Killdeer", "Upland Sandpiper", "Whimbrel", "Long-billed Curlew", "Hudsonian Godwit", "Marbled Godwit", "Ruddy Turnstone", "Red Knot", "Stilt Sandpiper", "Sanderling", "Dunlin", "Baird's Sandpiper", "Least Sandpiper", "White-rumped Sandpiper", "Buff-breasted Sandpiper", "Pectoral Sandpiper", "Semipalmated Sandpiper", "Western Sandpiper", "Short-billed Dowitcher", "Long-billed Dowitcher", "Wilson's Snipe", "Spotted Sandpiper", "Solitary Sandpiper", "Wandering Tattler", "Greater Yellowlegs", "Willet", "Lesser Yellowlegs", "Wilson's Phalarope", "Red-necked Phalarope", "Red Phalarope", "Double-striped Thick-knee", "Southern Lapwing", "Collared Plover", "Northern Jacana", "Wattled Jacana", "South American Snipe")<br>We dropped the following columns in our filter:("global_unique_identifier", "last_edited_date", "taxonomic_order", "category", "subspecies_common_name", "breeding_bird_atlas_code", "breeding_bird_atlas_category", "age_sex", "country_code", "state_code","county", "county code", "usfws_code", "atlas_block", "locality_type", "time_observations_started", "project_code", "all_species_reported", "has_media", "trip_comments", "species_comments")
DOI: 10.6084/m9.figshare.12760205
title: EFFECTS OF THE VACATION PERIOD ON THE HEALTH-RELATED PHYSICAL FITNESS OF SCHOOLCHILDREN.xlsx

description: <pre>Trata-se de um estudo observacional, de caráter longitudinal de curto prazo, realizado entre dezembro de 2018 e março de 2019, ou seja, o final e o início do ano letivo.</pre><pre>Participaram da pesquisa escolares com idade entre 12 e 17 anos, de ambos os sexos, que atenderam aos seguintes critérios de inclusão: estar regularmente matriculado e participando das aulas de Educação Física; estar presente na coleta de dados nas férias pré e pós-escola; sem limitações osteomioarticulares e os pais ou responsáveis ​​autorizados e assinaram o Termo de Consentimento Livre e Esclarecido. Este estudo foi aprovado pelo Comitê de Ética e Pesquisa em Seres Humanos da instituição de origem (número: 3.221.394). Todos os alunos também assinaram um termo de consentimento livre e esclarecido específico.</pre><pre><pre>Os atributos da ApFRS analisados ​​nesta pesquisa foram: circunferência da cintura, altura, massa corporal, flexibilidade, força / resistência muscular e aptidão cardiorrespiratória. Portanto, foram calculados o Índice de Massa Corporal (IMC) e a relação cintura-estatura (RCEt). Os testes foram realizados com intervalo de 48 horas e, no primeiro dia, foram realizados testes de composição corporal, flexibilidade e força / resistência muscular e, no segundo dia, apenas o teste de aptidão cardiorrespiratória. </pre></pre>
DOI: 10.6084/m9.figshare.12760202.v1
title: Caribbean Shorebirds eBird Raw Data

description: All data used in this assessment came from the World eBird Basic Dataset (Sullivan et al., 2009; publicly available at ebird.org/data/download). We downloaded the data from eBird on January 21, 2020 and filtered it using the R package ‘Auk’ (Strimas-Mackey, Miller & Hochachka, 2018) to include only records of interest (filtered by country and species). The result was a list of all eBird shorebird records in the insular Caribbean.<br>We filtered to include the following countries:("Jamaica", "Cuba", "The Bahamas", "Haiti", "Dominican Republic", "Antigua and Barbuda", "Dominica", "Saint Lucia", "Saint Vincent and the Grenadines", "Barbados", "Grenada", "Trinidad and Tobago", "Anguilla", "Aruba", "Bahamas", "Caribbean Netherlands", "Cayman Islands", "Guadeloupe", "Martinique", "Sint Maarten", "Saint Kitts and Nevis", "Virgin Islands (British)", "Virgin Islands (U.S.)", "Puerto Rico", "Saint Martin (French part)", "Turks and Caicos Islands", "Curaçao", "Saint Barthélemy", "Montserrat")<br>We filtered to include the following species:("Black-necked Stilt", "American Avocet", "American Oystercatcher", "Black-bellied Plover", "American Golden-Plover", "Pacific Golden-Plover", "Snowy Plover", "Wilson's Plover", "Semipalmated Plover", "Piping Plover", "Killdeer", "Upland Sandpiper", "Whimbrel", "Long-billed Curlew", "Hudsonian Godwit", "Marbled Godwit", "Ruddy Turnstone", "Red Knot", "Stilt Sandpiper", "Sanderling", "Dunlin", "Baird's Sandpiper", "Least Sandpiper", "White-rumped Sandpiper", "Buff-breasted Sandpiper", "Pectoral Sandpiper", "Semipalmated Sandpiper", "Western Sandpiper", "Short-billed Dowitcher", "Long-billed Dowitcher", "Wilson's Snipe", "Spotted Sandpiper", "Solitary Sandpiper", "Wandering Tattler", "Greater Yellowlegs", "Willet", "Lesser Yellowlegs", "Wilson's Phalarope", "Red-necked Phalarope", "Red Phalarope", "Double-striped Thick-knee", "Southern Lapwing", "Collared Plover", "Northern Jacana", "Wattled Jacana", "South American Snipe")<br>We dropped the following columns in our filter:("global_unique_identifier", "last_edited_date", "taxonomic_order", "category", "subspecies_common_name", "breeding_bird_atlas_code", "breeding_bird_atlas_category", "age_sex", "country_code", "state_code","county", "county code", "usfws_code", "atlas_block", "locality_type", "time_observations_started", "project_code", "all_species_reported", "has_media", "trip_comments", "species_comments")
DOI: 10.6084/m9.figshare.12760154
title: CEAP data.docx

description: Details of the data collected for "Institutionalizing Community Engaged Arts Programs: A Case Study," includes definitions of factors used in content analysis and the corresponding data collected
DOI: 10.6084/m9.figshare.12760205.v1
title: EFFECTS OF THE VACATION PERIOD ON THE HEALTH-RELATED PHYSICAL FITNESS OF SCHOOLCHILDREN.xlsx

description: <pre>Trata-se de um estudo observacional, de caráter longitudinal de curto prazo, realizado entre dezembro de 2018 e março de 2019, ou seja, o final e o início do ano letivo.</pre><pre>Participaram da pesquisa escolares com idade entre 12 e 17 anos, de ambos os sexos, que atenderam aos seguintes critérios de inclusão: estar regularmente matriculado e participando das aulas de Educação Física; estar presente na coleta de dados nas férias pré e pós-escola; sem limitações osteomioarticulares e os pais ou responsáveis ​​autorizados e assinaram o Termo de Consentimento Livre e Esclarecido. Este estudo foi aprovado pelo Comitê de Ética e Pesquisa em Seres Humanos da instituição de origem (número: 3.221.394). Todos os alunos também assinaram um termo de consentimento livre e esclarecido específico.</pre><pre><pre>Os atributos da ApFRS analisados ​​nesta pesquisa foram: circunferência da cintura, altura, massa corporal, flexibilidade, força / resistência muscular e aptidão cardiorrespiratória. Portanto, foram calculados o Índice de Massa Corporal (IMC) e a relação cintura-estatura (RCEt). Os testes foram realizados com intervalo de 48 horas e, no primeiro dia, foram realizados testes de composição corporal, flexibilidade e força / resistência muscular e, no segundo dia, apenas o teste de aptidão cardiorrespiratória. </pre></pre>
DOI: 10.6084/m9.figshare.12760154.v1
title: CEAP data.docx

description: Details of the data collected for "Institutionalizing Community Engaged Arts Programs: A Case Study," includes definitions of factors used in content analysis and the corresponding data collected
DOI: 10.6084/m9.figshare.12759650
title: Data associated with paper "Thermo-mechanical numerical modelling of the South American subduction zone: a multi-parametric investigation"

description: Data allowing to reproduce figures associated with paper "Thermo-mechanical numerical modelling of the South American subduction zone: a multi-parametric investigation"
DOI: 10.6084/m9.figshare.12759626
title: Lucas et al_cumulative culture_data and r scripts

description: Data and R Scripts for Lucas et al (submitted): The value of teaching increases with tool complexity in cumulative cultural evolution.<br><br>
DOI: 10.6084/m9.figshare.12759623
title: Variations in blood physiological and biochemical parameters of American shad during their reproductive cycle

description: Blood physiological and biochemical data
DOI: 10.6084/m9.figshare.12759623.v1
title: Variations in blood physiological and biochemical parameters of American shad during their reproductive cycle

description: Blood physiological and biochemical data
DOI: 10.6084/m9.figshare.12759650.v2
title: Data associated with paper "Thermo-mechanical numerical modelling of the South American subduction zone: a multi-parametric investigation"

description: Data allowing to reproduce figures associated with paper "Thermo-mechanical numerical modelling of the South American subduction zone: a multi-parametric investigation"
DOI: 10.6084/m9.figshare.12759650.v1
title: Data associated with paper "Thermo-mechanical numerical modelling of the South American subduction zone: a multi-parametric investigation"

description: Data allowing to reproduce figures associated with paper "Thermo-mechanical numerical modelling of the South American subduction zone: a multi-parametric investigation"