cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1083874.v1
title: #Evol2014 in tweets

description: Analysis of tweets tagged with #Evol2014, the Twitter hashtag for the Evolution 2014 meetings in Raleigh, North Carolina, from 20 to 24 June 2014.
DOI: 10.6084/m9.figshare.14368718.v1
title: Additional file 6

description: This file contains the phylogenomic trees (Nexus format) inferred by maximum-likelihood under the JTT+F+I+G4 model for:<br>(a) The whole dataset of 121 taxa; 1,526 protein sequences.<br>(b) A subset of Xylariales taxa only; 1,526 protein sequences.<br>(c) The entire dataset of 121 taxa; 1,086 protein sequences. The phylogenetic reconstruction was conducted using the PHYling pipeline (https://github.com/stajichlab/PHYling_unified).
DOI: 10.6084/m9.figshare.1549714.v1
title: Gang Rapes and Molestation Cases in India: Creating Mores for Eve-Teasing by Ambika Kohli

description: This article highlights the patriarchal nature of the Indian state and discusses this in relation to the state’s response to several rape and molestation cases. It emphasises a number of responses made by political, community and well-known fundamentalist leaders, which have focussed on controlling women’s sexuality and mobility. Such statements are framed within patriarchal notions of female morality, honour and shame through which mores are created for eve-teasing (sexual harassment). The article also discusses public remarks highlighted within the media in relation to the internationally reported Delhi gang rape case, which focussed on the movements and morality of the victim. I argue that such patriarchal responses support a rape culture in India, which has led to increased violence against women and breaches of Indian women’s human rights.
DOI: 10.6084/m9.figshare.5661514.v1
title: Additional file 3: of RNA-seq-based genome annotation and identification of long-noncoding RNAs in the grapevine cultivar â Rieslingâ

description: Predicted Functional Annotation of the Maker Annotation. This table details the best hits of the Maker-derived genes to the Uniprot-swissprot and the Uniprot-Uniref90 reference protein databases. Additional data is shown for the best match gene in the reference PN40024 annotation and the type of predicted duplication classification. (CSV 1661 kb)
DOI: 10.6084/m9.figshare.25365772.v1
title: Human-Exoskeleton Physical Interaction during Assisted Walking and the Interaction Portrait Analysis

description: Cite this article when using the dataset fully or in part.<b>M. Shushtari, J. Foellmer, and A. Arami, "Human-Exoskeleton Interaction Portrait," Journal of NeuroEngineering and Rehabilitation, </b>Volume 21, article number 152, <b>2024.</b>DOI: https://doi.org/10.1186/s12984-024-01447-1For using the video please ask for permission at arash.arami@uwaterloo.ca# Dataset Description: “Human-Exoskeleton Interaction Portrait”<br>This dataset includes experimental data for the paper titled “Human-Exoskeleton Interaction Portrait.”The experiment consisted of three blocks, each involving participants walking on the treadmill with the exoskeleton controlled by one of three different controllers: Time-Based torque Controller (TBC), Hybrid Torque Controller (HTC), or Adaptive Model-Based Torque Controller (AMTC). The order of the blocks was varied among participants to mitigate any potential order effects. Within each block, participants walked {at 0.4, 0.6, and 0.8 m/s, respectively}The data are divided into four modalities:<br>## 1. Exo:- Contains raw exoskeleton data including joint angles, speed, and acceleration for the hip and knee joints of the right and left legs.- Includes actuation torques for each joint and raw data from two IMUs located on each thigh of the exoskeleton.- Sampled at 200 Hz and stored in a Matlab timetable.<br>## 2. EMG:- Measurement data from 16 Delsys EMG sensors.- Envelopes are extracted and resampled to 200 Hz.<br>## 3. Trdml:- Contains Bartek Treadmill speed data along with loadcell measurements.- Includes 3D measurements of ground reaction forces, moments, and center of pressure for each foot.- Resampled to 200 Hz.<br>## 4. Vo2:- Metabolic measurements.<br>## Experiments<br>### Main:- Contains data from the main experiment where each participant walked on a treadmill with an active exoskeleton.- Three different controllers (TBC, HTC, and AMTC) were tested in a random order for each participant.- Each controller was tested at three different speeds (0.4, 0.6, and 0.8 m/s).<br>### NoExo:- Contains data of participants walking on a treadmill without the exoskeleton.- Tested at the same speeds as in the Main experiment.<br>## Abbreviations and Definitions:<br>- **sub:** subject- **r:** right- **l:** left- **x, y, z:** principal 3D axes- **trdml:** treadmill- **spd:** speed- **cntrl_type:** controller type- **q:** joint angles- **dq:** joint speed- **u:** joint torque- **Q:** quaternion- **acc:** acceleration- **gyro:** angular velocity- **GMx:** Gluteus Maximus- **BF:** right leg Bicep Femoris- **RF:** right leg Rectus Femoris- **VM:** right leg Vastus Medialis- **GM:** right leg Gastrocnemius Medialis- **Sol:** right leg Soleus- **TA:** right leg Tibialis Anterior- **GRF:** ground reaction forces- **GRM:** ground reaction moment- **CoP:** center of pressure- **Vo2:** oxygen uptake
DOI: 10.6084/m9.figshare.25734288.v1
title: Dopamine neurons encode trial-by-trial subjective reward value in an auction-like task; Data and code

description: Personal choices fluctuate from moment to moment and thus reflect instantaneous subjective reward value. Owing to the constaints of choice-based tasks, there is no direct evidence documenting the neural basis of moment-to-moment changes in subjective value. The well-established Becker-DeGroot-Marschak (BDM) auction-like mechanism, allows participants to place bids that reveal their true subjective reward value on a trial-by-trial basis; untruthful bidding results in suboptimal reward (‘incentive compatibility’). In our experiment, male rhesus monkeys trained for several years to accurately place BDM bids for juice rewards without specific external constraints. Their bids for physically identical rewards varied from trial to trial with higher bids for larger reward amounts. In these highly experienced animals, responses of midbrain dopamine neurons reflected the trial-by-trial variations of bids despite constant, explicitly predicted reward amounts. Conversely, dopamine responses for similar bids were statistcally identical even for different physical reward amounts. Support Vector Regression accurately predicted animals' bids using as few as twenty dopamine neurons. Thus, phasic dopamine reward signals reflect instantaneous subjective reward value.
DOI: 10.6084/m9.figshare.25858267.v1
title: A high-density genome-wide approach reveals novel genetic markers linked to small ruminant lentivirus susceptibility in sheep

description: Visna/Maedi virus (VMV) is lentiviral disease of sheep responsible for severe production losses. Multiple genomic regions associated with infection were reported indicating genetic complexity. In this study, a combined genome-wide approach using a high-density SNP array has been performed, comparing VMV-infected (n=78) and non-infected (n=66) individuals of the Valle del Belice breed. The serological tests showed a seroprevalence of 26%. The comparison among results from different approaches (GWAS, Fisher’s exact test and the F<sub>ST</sub> analysis) revealed two association signals: on OAR03 close to the <i>GRIN2B</i> gene and on OAR05 close to the <i>TMEM232</i> gene. To the best of our knowledge, there has been no previous association between these genes and lentiviral infection in any species. The <i>GRIN2B</i> gene plays a role in pain response, synaptic transmission, and receptor clustering, while <i>TMEM232</i> is involved in the development of immune-related disorders. The results highlighted new aspects of the genetic complexity related to the resistance/susceptibility to VMV in sheep, confirming that studies on different breeds can lead to different results. The ideal approach for validation of the markers identified in our study is to use samples from a population independent from the discovery population with the same phenotype used in the discovery stage.
DOI: 10.6084/m9.figshare.28120541.v6
title: China's expressions of public views indices on climate risk and government responses on climate risk

description: A dataset on China's expressions of public views indices on climate risk and government responses on climate risk, 2011-2023.
DOI: 10.6084/m9.figshare.12931754.v3
title: Novel biological functions of the NsdC transcription factor in Aspergillus fumigatus

description: The fungal zinc finger transcription factor NsdC is named after, and is best known for, its essential role in sexual reproduction (never in sexual development). In previous studies with <i>Aspergillus nidulans </i>it was also shown to have roles in promotion of vegetative growth and suppression of asexual conidiation. In this study the function of the <i>nsdC </i>homologue in the opportunistic human pathogen <i>A. fumigatus</i> was investigated. NsdC was again found to be essential for sexual development, with deletion of the <i>nsdC </i>gene in both <i>MAT1-1 </i>and <i>MAT1-2 </i>mating partners of a cross leading to complete loss of fertility. However, a functional copy of <i>nsdC</i> in one mating partner was sufficient to allow sexual reproduction. Deletion of <i>nsdC </i>also led to decreased vegetative growth and allowed conidiation in liquid cultures, again consistent with previous findings. However, NsdC in <i>A. fumigatus </i>was shown to have additional biological functions including response to calcium stress, correct organization of cell wall structure and response to the cell wall stressors. Furthermore, virulence and host immune recognition was affected. Gene expression studies involving chromatin immunoprecipitation (ChIP) of RNA polymerase II (PolII) coupled to sequencing (Seq) revealed that deletion of <i>nsdC </i>resulted in changes in expression of over 620 genes under basal growth conditions. This demonstrated that this transcription factor mediates the activity of a wide variety of signalling and metabolic pathways and indicates that despite the naming of the gene, the promotion of sexual reproduction is just one among multiple roles of NsdC.
DOI: 10.6084/m9.figshare.14483013.v1
title: Supplementary Material for: Human Oral Mucosal Stem Cells Reduce Anastomotic Leak in an Animal Model of Colonic Surgery

description: <b><i>Background:</i></b> Anastomotic leak is regarded as one of the most feared complications of bowel surgery; avoiding leaks is a major priority. Attempts to reduce or eliminate leaks have included alternate anastomotic techniques. Human oral mucosa stem cells (hOMSC) are self-renewing and expandable cells derived from buccal mucosa. Studies have shown that hOMSC can accelerate tissue regeneration and wound healing. The objective of this study was to evaluate whether hOMSC can decrease anastomotic leak rates in a murine model of colon surgery. <b><i>Methods:</i></b> Two experiments were performed. In the first study, mice underwent colonic anastomosis using five interrupted sutures. hOMSC (<i>n</i> = 7) or normal saline (NS; <i>n</i> = 17) was injected into the colon wall at the site of the anastomosis. To evaluate whether hOMSC can impact anastomotic healing, the model was stressed by repeating the first experiment, reducing the number of sutures used for the construction of the anastomosis from five to four. Either hOMSC (<i>n</i> = 8) or NS (<i>n</i> = 20) was injected at the anastomosis. All mice that survived were sacrificed on postoperative day 7. Anastomotic leak rate, mortality, daily weight, and daily wellness scores were compared. <b><i>Results:</i></b> In the five-suture anastomosis, there were no differences in anastomotic leak rate, mortality, or daily weight. Mice that received hOMSC had significantly higher wellness scores on postoperative day 2 (<i>p</i> &lt; 0.05). In the four-suture anastomosis, there was a significant decrease in leak rate (70% [NS] vs. 25% [hOMSC], <i>p</i> = 0.029) and higher wellness scores in mice that received hOMSC (<i>p</i> &lt; 0.05). <b><i>Conclusion:</i></b> Our study suggests that injecting hOMSC at the colonic anastomosis can potentially reduce anastomotic leak and improve postoperative wellness in a murine model of colon surgery.
DOI: 10.6084/m9.figshare.15060978.v2
title: S1_Table.pdf

description: Laboratory results between chronic gastritis without progression and chronic gastritis with progression to IM group (mean ± SD)
DOI: 10.6084/m9.figshare.24433423.v1
title: Original data.rar

description: <b>Single-Cell Transcriptome Sequencing Reveals Spatial Distribution of IL34</b><sup><strong>+</strong></sup><b> Cancer-Associated Fibroblasts in Hepatocellular Carcinoma Tumor Microenvironment</b>
DOI: 10.6084/m9.figshare.28087397.v1
title: [Article dataset] Establishing a comprehensive host-parasite stable isotope database to unravel trophic relationships

description: This is the matching dataset of the submitted manuscript titled "<i>Establishing a comprehensive host-parasite stable isotope database to unravel trophic relationships</i>". The dataset represents the complete stable isotope and elemental composition, including carbon, nitrogen and sulphur stable isotopes and elemental contents from a wide range of hosts and parasites collected across the globe. For detailed information on the methods used in sampling and analysis, please refer to the Methods section of the paper itself.
DOI: 10.6084/m9.figshare.25368301.v2
title: <b>Posture-induced modulation of lower-limb joint powers in perturbed running</b>

description: Data prepared for two-way repeated measures ANOVA to examine the main and interaction effects of <i>Step</i> (level-step and drop-step) and <i>Posture</i> (<i>TI¯</i>, <i>TI</i><sub><em>0</em></sub>, <i>TI</i><sup>+</sup>, and <i>TI</i><sup>++</sup>) on the total limb and joints negative and positive powers.Abbreviations:<br><b>Abs</b>: absorption or negative work; <b>Gen</b>: generation or positive work.<br><b>Level-step:</b>1: <i>TI</i><sub><em>0</em></sub><i>, </i>self-selected trunk inclination; 2: <i>TI</i><sup>+</sup><i>, </i>low forward trunk inclination; 3: <i>TI¯</i><i>,</i> backward trunk inclination; 4: <i>TI</i><sup>++</sup><i>,</i> high forward trunk inclination.<b>Drop-step:</b>5: <i>TI</i><sub><em>0</em></sub><i>, </i>self-selected trunk inclination; 6: <i>TI</i><sup>+</sup><i>, </i>low forward trunk inclination; 7: <i>TI¯</i><i>,</i> backward trunk inclination; 8: <i>TI</i><sup>++</sup><i>,</i> high forward trunk inclination.---------------------------------------------------------------------------------------------------------------------------------------------------------avrg_Hip_Pow_Nrm + avrg_Knee_Pow_Nrm + avrg_Ankle_Pow_Nrmarray structure: 100 x 8 x 12 x 2 =&gt;1008122<br>1:4 (Level-step)5:8 (drop-step)<br><br>Normalized joint power<i>Posture order:</i>1:4=&gt; <i>TI</i><sub><em>0</em></sub>, <i>TI</i><sup>+</sup>, <i>TI¯ </i>and <i>TI</i><sup>++</sup>5:8=&gt; <i>TI</i><sub><em>0</em></sub>, <i>TI</i><sup>+</sup>, <i>TI¯ </i>and <i>TI</i><sup>++</sup>Participants1: Left limb2: right limb** for this study we only analyzed the right limb data (2<sup>nd</sup> contact). The experimental setup involved 2 force plates where participants instructed to step onto the 1<sup>st</sup> force plate with the left foot. We lowered the 2<sup>nd</sup> force plate by 10cm to simulate the drop-step.
DOI: 10.17632/zmbvb8vzn8
title: MENTAL HEALTH OF YOUTH AND SUICIDE: A CONTRIBUTION TO THE FIELD OF HEALTH

description: Objective: to produce a mental health podcast with young people from urban poverty contexts , based on their priority, on the processes of individual and social dimensions regarding suicidal behavior. Method: project approved by the applicant institution. Qualitative research developed through action research. The theoretical reference of choice is intersectionality, which reflects the multiplicities of differentiations that, articulating with gender, permeate the social. This approach does not emphasize the determinations of phenomena only on the economic basis, but also from other social markers, since several inequality aspects are now recognized as influencing the subjects' daily practices. The unit selected will be the State School, which belongs to the East Education Board 2, located in the Itaim Paulista neighborhood, east side of São Paulo (SP) - Brazil. Data collection will be performed through workshops - group technique that allows data collection in participatory research. All workshops will be recorded and filmed for further analysis. The instruments and methods of data collection will occur through interviews, field journal and different participatory strategies during the development of the workshops. The interviews will take place according to the questionnaire that apprehends the Social Reproduction Index (SRI), which analyzes the different dimensions of the social life of the groups. It is a tool capable of apprehending the differences of social reproduction that characterize the social classes that are part of a given territory, being able to show the different epidemiological profiles of families, even if they are living in the same micro space. This differentiation enables the planning of educational or other actions. The field journal used to make a dense description of what was observed in the field, written and/or recorded immediately to the field activity. Data processing: the workshops will be transcribed and inserted in the QSRNvivo software, used for text analysis and other materials, such as videos and audios. It is a useful technological tool for qualitative research to organize and analyze data production, which facilitates analysis, since the software is unable to understand the results. Analysis: will be followed a multilevel analysis, which considers the identity construction of the subjects, the symbolic representations and the social structure in which the participants are immersed.
DOI: 10.4121/14483220.v1
title: Supplementary data for the paper 'What makes a good driver on public roads and race tracks? An interview study'

description: Future vehicles may drive automatically in a human-like manner or contain systems that monitor human driving ability. Algorithms of these systems must have knowledge of criteria of good and safe driving behavior with regard to different driving styles. In the current study, interviews were conducted with 30 drivers, including driving instructors, engineering, and race drivers. The participants were asked to describe good driving on public roads and race tracks, and in some questions were supported with video material. The results were interpreted with the help of Endsley’s model of situation awareness. The interviews showed that there were clear differences between what was considered good driving on the race track and good driving on the public road, where for the former, the driver must touch the limit of the vehicle, whereas, for the latter, the limit should be avoided. However, in both cases, a good driver was characterized by self-confidence, lack of stress, and not being aggressive. Furthermore, it was mentioned that the driver’s posture and viewing behavior are essential components of good driving, which affect the driver’s prediction of events and execution of maneuvers. The implications of our findings for the development of automation technology are discussed. In particular, we see potential in driver posture estimation and argue that automated vehicles excel in perception but may have difficulty making predictions.<br>
DOI: 10.6084/m9.figshare.25546637.v1
title: Appendix 1. from Systematic challenges and opportunities in insect monitoring: a Global South perspective

description: Publication record biased query and results
DOI: 10.6084/m9.figshare.26504509.v1
title: Mussel Addition / Goose Exclusion Experiment at Sherman Creek Living Shoreline

description: Results of mussel-addition experiment and opportunistic goose-exclusion experiment conducted in the Sherman Creek Living Shoreline (New York, NY, USA) in 2021. We conducted continuous-flow core incubations to compare nitrogen-removal via denitrification among three experimental treatments: 1) S (sediment only, vegetation removed by geese), 2) S + P (sediment plus plant, geese excluded), and 3) S + P + M (sediment plus plant plus mussels added just prior incubation). We also conducted additions of labelled <sup>15</sup>NO<sub>3</sub><sup>-</sup> to determine rates of nitrogen fixation and the proportion of <sup>15</sup>N that was denitrified. Variables measured include dissolved gases (N<sub>2</sub>, O<sub>2</sub>), dissolved nutrients (NO<sub>3</sub><sup>-</sup> + NO<sub>2</sub><sup>-</sup>, NO<sub>2</sub><sup>-</sup>, NH<sub>3</sub>, and PO<sub>4</sub><sup>3-</sup>), sediment characteristics (bulk density, moisture content, organic content, porosity, percent carbon, percent nitrogen, and C:N ratio), and vegetation characteristics (stem height and density).For more information on survey methods and flux calculations, download and view metadata html file. Complete flux calculations performed in the R programming language, from instrument output to final fluxes, are detailed. The files in the "data_final_2021" folder are processed and ready for use. Raw data used in calculations are available in the "raw_data_2021" folder.This material is based upon work supported by the U.S. Geological Survey under Grant/Cooperative Agreement No. <i>78963-11357</i>. The views and conclusions contained in this document are those of the authors and should not be interpreted as representing the opinions or policies of the U.S. Geological Survey. Mention of trade names or commercial products does not constitute their endorsement by the U.S. Geological Survey.
DOI: 10.6084/m9.figshare.5129440.v1
title: Supplementary Material for: CXCR1 Regulates Pulmonary Anti-<b><i>Pseudomonas</i></b> Host Defense

description: <i>Pseudomonas aeruginosa</i> is a key opportunistic pathogen causing disease in cystic fibrosis (CF) and other lung diseases such as chronic obstructive pulmonary disease (COPD). However, the pulmonary host defense mechanisms regulating anti-<i>P. aeruginosa</i> immunity remain incompletely understood. Here we demonstrate, by studying an airway <i>P. aeruginosa</i> infection model, in vivo bioluminescence imaging, neutrophil effector responses and human airway samples, that the chemokine receptor CXCR1 regulates pulmonary host defense against <i>P. aeruginosa</i>. Mechanistically, CXCR1 regulates anti-<i>Pseudomonas</i> neutrophil responses through modulation of reactive oxygen species and interference with Toll-like receptor 5 expression. These studies define CXCR1 as a novel, noncanonical chemokine receptor that regulates pulmonary anti-<i>Pseudomonas</i> host defense with broad implications for CF, COPD and other infectious lung diseases.
DOI: 10.17632/8gw7f5nkcf
title: Single and Combined Effects

description: Single and Combined Effects of Efficacies, Risk-Taking, Conflict Management, and Procrastination on Academic Performance
DOI: 10.6084/m9.figshare.13649843.v3
title: Sub01

description: EEG Dataset for 3-Class MI sub1