cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12873122.v3
title: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters
DOI: 10.6084/m9.figshare.12873122.v1
title: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters
DOI: 10.6084/m9.figshare.12873122.v8
title: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters
DOI: 10.6084/m9.figshare.12873122.v4
title: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters
DOI: 10.6084/m9.figshare.12873122.v7
title: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters
DOI: 10.6084/m9.figshare.12873062.v1
title: Additional file 12 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 12:Table S7. The 282 target genes that are predicted by TargetScan for the Monocyte-over-expressed miRNAs. (XLS 34 KB)
DOI: 10.6084/m9.figshare.12873122.v6
title: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters
DOI: 10.6084/m9.figshare.12873077.v1
title: Additional file 17 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 17:Table S11. Elements in the Venn diagram intersection of Figure S6D to S6F. (XLS 20 KB)
DOI: 10.6084/m9.figshare.12873059
title: Additional file 11 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 11:Table S6. The 2300 target genes that are predicted by PicTar for the DC-over-expressed miRNAs. (XLS 186 KB)
DOI: 10.6084/m9.figshare.12873059.v1
title: Additional file 11 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 11:Table S6. The 2300 target genes that are predicted by PicTar for the DC-over-expressed miRNAs. (XLS 186 KB)
DOI: 10.6084/m9.figshare.12873122.v17
title: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters
DOI: 10.6084/m9.figshare.12873065
title: Additional file 13 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 13:Table S8. The 1591 target genes that are predicted by PicTar for the Monocyte-over-expressed miRNAs. (XLS 132 KB)
DOI: 10.6084/m9.figshare.12873071.v1
title: Additional file 15 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 15:Table S9. Target genes that are down-regulated in DCs relative to monocytes and that were predicted using PicTar or Targetscan, to be targets of miRNAs that are over-expressed in DCs relative to monocytes. (XLS 34 KB)
DOI: 10.6084/m9.figshare.12873056.v1
title: Additional file 10 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 10:Table S5. The 421 target genes that are predicted by TargetScan for the DC-over-expressed miRNAs. (XLS 46 KB)
DOI: 10.6084/m9.figshare.12873071
title: Additional file 15 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 15:Table S9. Target genes that are down-regulated in DCs relative to monocytes and that were predicted using PicTar or Targetscan, to be targets of miRNAs that are over-expressed in DCs relative to monocytes. (XLS 34 KB)
DOI: 10.6084/m9.figshare.12873074
title: Additional file 16 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 16:Table S10. Target genes that are down-regulated in monocytes relative to DCs and that were predicted using PicTar or Targetscan, to be targets of miRNAs that are over-expressed in monocytes relative to DCs. (XLS 38 KB)
DOI: 10.6084/m9.figshare.12873104.v1
title: Additional file 4 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 4:Table S2. Overview of over-represented TFBS motifs in promoter seqeunces of miRNAs that are upregulated in monocytes or DCs. (XLS 16 KB)
DOI: 10.6084/m9.figshare.12873065.v1
title: Additional file 13 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 13:Table S8. The 1591 target genes that are predicted by PicTar for the Monocyte-over-expressed miRNAs. (XLS 132 KB)
DOI: 10.6084/m9.figshare.12873074.v1
title: Additional file 16 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 16:Table S10. Target genes that are down-regulated in monocytes relative to DCs and that were predicted using PicTar or Targetscan, to be targets of miRNAs that are over-expressed in monocytes relative to DCs. (XLS 38 KB)
DOI: 10.6084/m9.figshare.12873113
title: Additional file 7 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 7:Table S3. Library of TFBS motif for which the cognate TFs are expressed (presence = 1) or not expressed (absence = 1) in DCs. (XLS 38 KB)
DOI: 10.6084/m9.figshare.12873113.v1
title: Additional file 7 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 7:Table S3. Library of TFBS motif for which the cognate TFs are expressed (presence = 1) or not expressed (absence = 1) in DCs. (XLS 38 KB)
DOI: 10.6084/m9.figshare.12873122.v16
title: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters
DOI: 10.6084/m9.figshare.12873101
title: Additional file 3 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 3:Table S1. MicroRNAs for which assays have been developed by Applied Biosystems, and of which expression levels were determined in monocytes and dendritic cells. Of a total of 157 miRNAs, 104 were expressed in DC and/or monocytes, whereas 53 were not detected in either cell type. (XLS 32 KB)
DOI: 10.6084/m9.figshare.12873104
title: Additional file 4 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 4:Table S2. Overview of over-represented TFBS motifs in promoter seqeunces of miRNAs that are upregulated in monocytes or DCs. (XLS 16 KB)
DOI: 10.6084/m9.figshare.12873119
title: Additional file 9 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 9:Table S4. Gene ontology analysis of the expressed and not-expressed TFs of predicted binding sites in the promoters of miRNA. (XLS 51 KB)
DOI: 10.6084/m9.figshare.12873062
title: Additional file 12 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 12:Table S7. The 282 target genes that are predicted by TargetScan for the Monocyte-over-expressed miRNAs. (XLS 34 KB)
DOI: 10.6084/m9.figshare.12873101.v1
title: Additional file 3 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 3:Table S1. MicroRNAs for which assays have been developed by Applied Biosystems, and of which expression levels were determined in monocytes and dendritic cells. Of a total of 157 miRNAs, 104 were expressed in DC and/or monocytes, whereas 53 were not detected in either cell type. (XLS 32 KB)
DOI: 10.6084/m9.figshare.12873119.v1
title: Additional file 9 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 9:Table S4. Gene ontology analysis of the expressed and not-expressed TFs of predicted binding sites in the promoters of miRNA. (XLS 51 KB)
DOI: 10.6084/m9.figshare.12873122.v20
title: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters
DOI: 10.6084/m9.figshare.12873122.v22
title: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters
DOI: 10.6084/m9.figshare.12873077
title: Additional file 17 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 17:Table S11. Elements in the Venn diagram intersection of Figure S6D to S6F. (XLS 20 KB)
DOI: 10.6084/m9.figshare.12873122
title: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters
DOI: 10.6084/m9.figshare.12873056
title: Additional file 10 of MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

description: Additional file 10:Table S5. The 421 target genes that are predicted by TargetScan for the DC-over-expressed miRNAs. (XLS 46 KB)
DOI: 10.6084/m9.figshare.7991627
title: Smoothable Gorenstein Points Via Marked Schemes and Double-generic Initial Ideals

description: Over an infinite field <i>K</i> with char(K)≠2,3, we investigate smoothable Gorenstein <i>K</i>-points in a punctual Hilbert scheme and obtain the following results: (i) every <i>K</i>-point defined by local Gorenstein <i>K</i>-algebras with Hilbert function (1,7,7,1) is smoothable (this is the only case non treated in the range considered by Iarrobino and Kanev in 1999; (ii) the Hilbert scheme Hilb167 has at least five irreducible components. As a byproduct of our study about Hilb167, we also find a new elementary component in Hilb157. We face the problem from a new point of view, that is based on properties of double-generic initial ideals and of marked schemes. The properties of marked schemes give us a simple method to compute the Zariski tangent space to a Hilbert scheme at a given <i>K</i>-point, which is very useful in this context. We also test our tools to find the already known result that <i>K</i>-points defined by local Gorenstein <i>K</i>-algebras with Hilbert function (1,5,5,1) are smoothable. The problem that we consider is strictly related to the study of the irreducibility of the Gorenstein locus in a Hilbert scheme and, more generally, of the irreducibility of a Hilbert scheme, which is a very open question.
DOI: 10.6084/m9.figshare.7991615
title: MEG_scene_data

description: Preprocessed data related to the manuscript "Exploring spatio-temporal neural dynamics of the human visual cortex". <br><br>Data description and related code can be found at github.com/YingYang/MEG_Scene/blob/master/README.md<br>
DOI: 10.6084/m9.figshare.7991627.v1
title: Smoothable Gorenstein Points Via Marked Schemes and Double-generic Initial Ideals

description: Over an infinite field <i>K</i> with char(K)≠2,3, we investigate smoothable Gorenstein <i>K</i>-points in a punctual Hilbert scheme and obtain the following results: (i) every <i>K</i>-point defined by local Gorenstein <i>K</i>-algebras with Hilbert function (1,7,7,1) is smoothable (this is the only case non treated in the range considered by Iarrobino and Kanev in 1999; (ii) the Hilbert scheme Hilb167 has at least five irreducible components. As a byproduct of our study about Hilb167, we also find a new elementary component in Hilb157. We face the problem from a new point of view, that is based on properties of double-generic initial ideals and of marked schemes. The properties of marked schemes give us a simple method to compute the Zariski tangent space to a Hilbert scheme at a given <i>K</i>-point, which is very useful in this context. We also test our tools to find the already known result that <i>K</i>-points defined by local Gorenstein <i>K</i>-algebras with Hilbert function (1,5,5,1) are smoothable. The problem that we consider is strictly related to the study of the irreducibility of the Gorenstein locus in a Hilbert scheme and, more generally, of the irreducibility of a Hilbert scheme, which is a very open question.
DOI: 10.6084/m9.figshare.7991603
title: Supplementary Datasets associated with a PNAS publication: 'Mosaic origin of the eukaryotic kinetochore' https://doi.org/10.1073/pnas.1821945116

description: Supplementary Datasets associated to a pre-publication titled: 'Mosaic origin of the eukaryotic kinetochore'. More information can be found in the SI Appendix (https://www.pnas.org/highwire/filestream/865928/field_highwire_adjunct_files/0/pnas.1821945116.sapp.pdf), under "External Data".<br>These include:(1) Hidden Markov Models: archive (.zip) of 147 HMM models(2) HHsearch Network: Cytoscape file (.cys) of HHsearch network(3) RWD/UBC structures: Pymol session (.pse) of RWD/UBC homologs(4) TBP-like structures: Pymol session (.pse) of TBP-like homologs(5) Histone structures: Pymol session (.pse) of histone homologs(6) Mis12/NANO structures Pymol session (.pse) of Mis12/NANO homologs<br>
DOI: 10.6084/m9.figshare.7991600
title: Fish Behaviour Index (FBI)

description: <b>The Fish Behaviour Index (FBI):</b><i> </i>User guide, FBI spreadsheet and examples as outlined in the FBI user guide. <br><b>The FBI is free to use conditional upon citing the following in any outputs:</b>Deakin, AG, Buckley, J, AlZu'bi, HS, Cossins, AR, Spencer, JW, Al'Nuaimy, W, Young, IS, Thomson, JS & Sneddon, LU. 2019. Automated monitoring of behaviour in zebrafish after invasive procedures.<i> Scientific Reports DOI:10.1038/s41598-019-45464-w</i><br><i><br></i>
DOI: 10.6084/m9.figshare.7991603.v1
title: Supplementary Datasets associated with a PNAS publication: 'Mosaic origin of the eukaryotic kinetochore' https://doi.org/10.1073/pnas.1821945116

description: Supplementary Datasets associated to a pre-publication titled: 'Mosaic origin of the eukaryotic kinetochore'. More information can be found in the SI Appendix (https://www.pnas.org/highwire/filestream/865928/field_highwire_adjunct_files/0/pnas.1821945116.sapp.pdf), under "External Data".<br>These include:(1) Hidden Markov Models: archive (.zip) of 147 HMM models(2) HHsearch Network: Cytoscape file (.cys) of HHsearch network(3) RWD/UBC structures: Pymol session (.pse) of RWD/UBC homologs(4) TBP-like structures: Pymol session (.pse) of TBP-like homologs(5) Histone structures: Pymol session (.pse) of histone homologs(6) Mis12/NANO structures Pymol session (.pse) of Mis12/NANO homologs<br>
DOI: 10.6084/m9.figshare.12873191.v5
title: Additional file of Analysis of tumor environmental response and oncogenic pathway activation identifies distinct basal and luminal features in HER2-related breast tumor subtypes

description: Additional file of Analysis of tumor environmental response and oncogenic pathway activation identifies distinct basal and luminal features in HER2-related breast tumor subtypes
DOI: 10.6084/m9.figshare.7991600.v1
title: Fish Behaviour Index (FBI)

description: <b>The Fish Behaviour Index (FBI):</b><i> </i>User guide, FBI spreadsheet and examples as outlined in the FBI user guide. <br><b>The FBI is free to use conditional upon citing the following in any outputs:</b>Deakin, AG, Buckley, J, AlZu'bi, HS, Cossins, AR, Spencer, JW, Al'Nuaimy, W, Young, IS, Thomson, JS & Sneddon, LU. 2019. Automated monitoring of behaviour in zebrafish after invasive procedures.<i> Scientific Reports DOI:10.1038/s41598-019-45464-w</i><br><i><br></i>
DOI: 10.6084/m9.figshare.12873191.v6
title: Additional file of Analysis of tumor environmental response and oncogenic pathway activation identifies distinct basal and luminal features in HER2-related breast tumor subtypes

description: Additional file of Analysis of tumor environmental response and oncogenic pathway activation identifies distinct basal and luminal features in HER2-related breast tumor subtypes
DOI: 10.6084/m9.figshare.12873206
title: Additional file 3 of Analysis of tumor environmental response and oncogenic pathway activation identifies distinct basal and luminal features in HER2-related breast tumor subtypes

description: Additional File 3: Supplemental Table S2. Summary of tumor samples. This document provides a summary of the tumor samples used in the study. (XLSX 34 KB)
DOI: 10.6084/m9.figshare.12873209
title: Additional file 4 of Analysis of tumor environmental response and oncogenic pathway activation identifies distinct basal and luminal features in HER2-related breast tumor subtypes

description: Additional File 4: Supplementary Figures S1 to S18. This document contains Supplementary Figures S1 to S18. (XLSX 61 KB)
DOI: 10.6084/m9.figshare.12873209.v1
title: Additional file 4 of Analysis of tumor environmental response and oncogenic pathway activation identifies distinct basal and luminal features in HER2-related breast tumor subtypes

description: Additional File 4: Supplementary Figures S1 to S18. This document contains Supplementary Figures S1 to S18. (XLSX 61 KB)
DOI: 10.6084/m9.figshare.12873206.v1
title: Additional file 3 of Analysis of tumor environmental response and oncogenic pathway activation identifies distinct basal and luminal features in HER2-related breast tumor subtypes

description: Additional File 3: Supplemental Table S2. Summary of tumor samples. This document provides a summary of the tumor samples used in the study. (XLSX 34 KB)
DOI: 10.6084/m9.figshare.7991318
title: Otitis media with effusion: Pediatric hearing thresholds

description: The data set was used to determine whether a full range of pure tone audiometric frequencies is required to assess hearing loss caused by otitis media with effusion in children, and if different combinations of test frequency pure tone averaging calculations may affect clinical decision criteria for surgical treatment. Using a retrospective cohort study design, anonymized right and left ear air conduction pure tone threshold data were obtained, from 125 Hz to 8 kHz, for 96 children with OME aged 4 to 12 years. Audiometric data related to ear and gender are shown in the data set.
DOI: 10.6084/m9.figshare.7991315
title: soil quality

description: soil quality
DOI: 10.25919/5f47a80fb9976
title: Parkes observations for project P1021 semester 2020APRS_04

description: We propose to continue our observations of PSR J1653-45, a 951-ms pulsar in a long, 1.5-yr orbit. Binary pulsars are valuable objects of scientific study, allowing for a wide range of applications, including tests of gravity, probes of the neutron star equation of state, and fossil records of stellar evolution. Long spin-period pulsars in binary systems are generally much rarer than faster-spinning `recycled’ pulsars, and represent an under-explored region of pulsar binary evolution. In addition to its long orbital period, PSR J1653-45 also experiences extended eclipses, lasting up to half of the orbital period and whose nature is not well understood. These eclipses have also prevented the determination of an orbital or phase-connected timing solution, both vital steps in allowing for the continued study of this system. We propose a targeted, high-cadence observing campaign designed to monitor this pulsar as it transitions out of its eclipsing state. The campaign has the twin goals of both monitoring how the eclipse affects the pulsar’s emission properties, thereby revealed more about the nature of the eclipses themselves, and of extracting as much information regarding the pulsar’s orbit during its least-explored regions, thereby constrained and hopefully solving the pulsar’s orbit and ideally leading to the development of a timing solution. In both instances, we hope to gain a greater understanding of this pulsar’s properties and how it fits into this under-explored class of unrecycled pulsar binaries.
DOI: 10.6084/m9.figshare.12873290.v14
title: Additional file of RNA-seq: technical variability and sampling

description: Additional file of RNA-seq: technical variability and sampling
DOI: 10.6084/m9.figshare.12873290.v15
title: Additional file of RNA-seq: technical variability and sampling

description: Additional file of RNA-seq: technical variability and sampling
DOI: 10.6084/m9.figshare.12873269.v1
title: Additional file 3 of RNA-seq: technical variability and sampling

description: Additional file 3:Perl script for mapping between exons and a genome region. Format PL. View with Wordpad. (PL 2 KB)
DOI: 10.6084/m9.figshare.12873272
title: Additional file 4 of RNA-seq: technical variability and sampling

description: Additonal File 4:Perl script that converts contiguous sequences in a SAMtools consensus pileup to FASTA, BED, or coordinate tables. Format PL. View with Wordpad. (PL 5 KB)