cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17209137
title: Table 2 in New species of Moenkhausia Eigenmann, 1903 (Characiformes: Characidae) with comments on the Moenkhausia oligolepis species complex

description: Table 2. Genetic distance (mean ± standard error) among fishes of each locality (diagonal) and among samples from different localities (below diagonal). Numbers after species names are Genbank accession numbers.
12345671 Moenkhausia sanctaefilomenaeParaná Basin EU177008 to EU1770120.003±0.0022 Moenkhausia oligolepisAmazon Basin EU177038 to EU1770420.190±0.0190.010±0.0033 Moenkhausia oligolepisAraguaia Basin EU177013 to EU1770170.200±0.0210.128±0.0150.010±0.0034 Moenkhausia oligolepisParaguay Basin EU177033 to EU1770370.184±0.0180.109±0.0130.139±0.0160.014±0.0035 Moenkhausia forestiiParaguay Basin -Aquidauana EU177023 to EU1770270.183±0.0190.174±0.0190.180±0.0190.197±0.0190.005±0.0026 Moenkhausia forestiiParaná Basin EU177018 to EU1770220.182±0.0190.172±0.0190.180±0.0190.197±0.0190.006±0.0020.000±0.0007 Moenkhausia forestiiParaguay Basin - Cáceres EU177028 to EU1770320.183±0.0190.173±0.0190.178±0.0190.198±0.0200.007±0.0030.001±0.0000.001±0.001
description: Published as part of Benine, Ricardo C., Mariguela, Tatiane C. & Oliveira, Claudio, 2009, New species of Moenkhausia Eigenmann, 1903 (Characiformes: Characidae) with comments on the Moenkhausia oligolepis species complex, pp. 165 in Neotropical Ichthyology 7 (2) on page 165, DOI: 10.1590/S1679-62252009000200005, http://zenodo.org/record/5420488
DOI: 10.15468/dl.cm5xgz
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nacaduba pactolus",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019733-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38fsv3
title: Occurrence Download

description: A dataset containing 563 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Desfontainia spinosa)"
 ]
}

 The dataset includes 563 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019734-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgssan
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Frangula wendtii (Ishiki) A.Pool)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017492-250127130748423/datasets/export for details.
DOI: 10.15468/dl.qjgfsd
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Karwinskia calderonii Standl.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017493-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nv68f9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Karwinskia johnstonii R.Fern.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017494-250127130748423/datasets/export for details.
DOI: 10.5281/zenodo.14822879
title: NextACC Post-processed Dataset and Plotting Code

description: This is the post-processed dataset for NextACC convection-initiated gravity wave experiments. The plotting code is also enclosed inside.
DOI: 10.5281/zenodo.14822880
title: NextACC Post-processed Dataset and Plotting Code

description: This is the post-processed dataset for NextACC convection-initiated gravity wave experiments. The plotting code is also enclosed inside.
DOI: 10.15468/dl.xqkgqb
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Karwinskia latifolia Standl.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017495-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kwvyu
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Karwinskia mollis Schltdl.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 28 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017496-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.szh8wc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Karwinskia rzedowskii R.Fern.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017497-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10675773
title: Internshala Job Listings Dataset
DOI: 10.15468/dl.b5cxhk
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Karwinskia subcordata Schltdl.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017498-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n6b2h9
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.27_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (May, June)",
 "TaxonKey is Insecta",
 "Year 2014-2014"
 ]
}

 The dataset's 2 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017491-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rg9pz6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Karwinskia tehuacana R.Fern. & N.Waksman)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017499-250127130748423/datasets/export for details.
DOI: 10.15468/dl.23afvv
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Censo poblacional de Canquén Colorado (Chloephaga rubidiceps) en la Región de Magallanes y de la Antártica Chilena"
 ]
}

 The dataset includes 190 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017500-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14822968
title: Water tank experiment data using UAV-based GNSS-A system

description: Contains the phase-only correlation waveform between reception waveform and the replica waveform (200 kHz.)

[determined reception timing]: the reception timing determined by the empirical algorithm.[calculated timing]: the ideal reception timing calculated.
DOI: 10.5281/zenodo.14822969
title: Water tank experiment data using UAV-based GNSS-A system

description: Contains the phase-only correlation waveform between reception waveform and the replica waveform (200 kHz.)

[determined reception timing]: the reception timing determined by the empirical algorithm.[calculated timing]: the ideal reception timing calculated.
DOI: 10.15468/dl.x2ac95
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Karwinskia umbellata (Cav.) Schltdl.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017501-250127130748423/datasets/export for details.
DOI: 10.15468/dl.cgx5yg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Karwinskia venturae R.Fern.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017503-250127130748423/datasets/export for details.
DOI: 10.15468/dl.9kpwxn
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhamnus rosei M.C.Johnst. & L.A.Johnst.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017504-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vq8ub4
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhamnus serrata Humb. & Bonpl. ex Willd., 1819)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017506-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mshmx
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sarcomphalus amole (Sessé & Moc.) Hauenschild)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 216 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017508-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-2006582544
title: Austrian Crystallographic Diffraction Consortium

description: The Austrian Crystallographic Diffraction Consortium (ACDC) BAG aims at supporting several macromolecular structural biology groups across Austria (in total
20 research groups at 9 institutions in 4 cities). We employ mainly the technique of X-ray crystallography to characterize macromolecular biological complexes,
but also solution scattering approaches are frequently used to characterize dynamic assemblies. Approval of this BAG will be essential for researchers in all
our groups to carry out their structural studies on various health-related and basic research-oriented topics, which are targeted at characterizing large molecular
assemblies or proteins currently under-represented in the PDB, including membrane proteins. Corresponding high-resolution diffraction data are only obtainable
through the use of synchrotron radiation sources. Thus regular synchrotron access is highly desirable to maintain a competitive advantage in our individual
research fields.
DOI: 10.15151/esrf-es-2024638548
title: IBS BAG

description: The IBS BAG includes in this proposal IBS teams and external groups from CEA-Cadarache (St Paul lez Durance) and IRBA (Brétigny-sur-Orge). We study structure-function relationships of proteins emphasizing in human health, biotechnology and methodology. Most of the projects are a continuation of the MX-2498 proposal and can be grouped into different topics as follows: host-pathogen interaction, new therapy targets, fundamental cellular mechanisms, membrane proteins, biotechnological applications and methodology. Some of these projects use integrative approaches (X-ray crystallography, cryo-EM, SAXS and NMR), together with other biophysical and biochemical studies, and very recently the use of AI, with the aim to fully understand the complexity of the biological macromolecular systems under study.
DOI: 10.15151/esrf-es-2019956908
title: Investigating the metamagnetic phase transition in FeRh.

description: FeRh undergoes an AFM-FM phase transition at about room temperature. Associated with a structural (lattice expansion) and resistivity changes amongst other key characteristic changes, this metamagnetic transition positions the material as a potential candidate for applications in memrsistive device development and ultimately neuromorphic computing. The objective of the experiment is to investigate with a nanometric resolution the effects of the transition on the structure of the sample and ultimately correlation with the magnetic properties of the material.
DOI: 10.15151/esrf-es-2035689737
title: Site incorporation of Cu in SbSe thin films

description: Inthis experiment XAS at the Cu-K edge will be used in order to elucidate the incorporation site of Cu dopants in SbSe thin films
DOI: 10.15468/dl.rvaeds
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sarcomphalus guatemalensis (Hemsl.) Hauenschild)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017509-250127130748423/datasets/export for details.
DOI: 10.5281/zenodo.14776473
title: High-Throughput Amplicon Sequencing (ITS-LSU) of Hypocrealean Entomopathogenic Fungal Strains.

description: Data Acquisition

Context

This dataset was obtained as part of a research project integrating high-throughput sequencing (HTS) technology into fungal identification and barcoding. The specific experiment aimed to assess whether long-read HTS (PacBio SEQUEL I) could reliably identify entomopathogenic fungi (Hypocreales, Ascomycota) from our collections. Additionally, it enabled the characterization of intra-genomic variation in two ribosomal barcoding markers—the internal transcribed spacers (ITS) and the large subunit ribosomal (LSU) DNA—both widely used in fungal taxonomy and barcoding.

 

Protocol

Fungal materials and dna amplification

A total of 96 strains of entomopathogenic fungi (file: 1_list_sample_and_barcodes.xls) were obtained from culture collections and cultivated on potato dextrose agar (PDA) medium for one to four weeks. Mycelia were harvested, and DNA was extracted using a modified CTAB protocol. The entire ITS region (ITS1-5.8S-ITS2) and partial LSU DNA (D1-D2 domains) were co-amplified using universal primers ITS5 (forward) and LS5 (reverse). PCR amplifications were performed using two different DNA polymerases—DreamTaq DNA polymerase (Thermo Fisher) and Platinum SuperFi DNA polymerase (Invitrogen). Each primer was tagged with a barcode sequence, generating distinct combinations corresponding to different samples and polymerase conditions. PCR products from both polymerases were purified using the AMPure XP DNA purification kit. The DNA concentration of the purified products was quantified using Qubit™. All purified PCR products were then adjusted to a uniform concentration of approximately 15 ng/µl.

Amplicon High-Throughput Sequencing and Data Analysis

The amplicons were pooled as a basis to construct a unique sequencing library using the SMRTbell Template Prep Kit 1.0. The DNA library were validated by Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA, USA), quantifiedby Qubit 2.0 Fluorometer, and loaded on a PacBio SEQUEL I machine according to manufacturer’s instructions (Pacific Biosciences of California, Inc., California, USA). After obtaining the raw data (file: F.subreads.bam), Circular Consensus Sequences (CCS) were generated from subread sequences using the CCS tool, requiring a minimum of five subreads per sequence. Sample sequences were demultiplexed based on barcode information. To delineate the ITS and D1/D2 LSU regions, all sequences were bioinformatically cleaved at the ITS4 priming sites.
description: Cordyceps

The CCS of 22 samples belonging to Cordyceps were extracted and, within each sample, clustered at 97% using CD-HIT-EST. Sequences within each cluster were then aligned using MUSCLE, and a consensus sequence was generated for each cluster (file: Data_Cordyceps.zip). These data were used for publication in Paloi et al. (2021).
DOI: 10.5281/zenodo.14776474
title: High-Throughput Amplicon Sequencing (ITS-LSU) of Hypocrealean Entomopathogenic Fungal Strains.

description: Data Acquisition

Context

This dataset was obtained as part of a research project integrating high-throughput sequencing (HTS) technology into fungal identification and barcoding. The specific experiment aimed to assess whether long-read HTS (PacBio SEQUEL I) could reliably identify entomopathogenic fungi (Hypocreales, Ascomycota) from our collections. Additionally, it enabled the characterization of intra-genomic variation in two ribosomal barcoding markers—the internal transcribed spacers (ITS) and the large subunit ribosomal (LSU) DNA—both widely used in fungal taxonomy and barcoding.

 

Protocol

Fungal materials and dna amplification

A total of 96 strains of entomopathogenic fungi (file: 1_list_sample_and_barcodes.xls) were obtained from culture collections and cultivated on potato dextrose agar (PDA) medium for one to four weeks. Mycelia were harvested, and DNA was extracted using a modified CTAB protocol. The entire ITS region (ITS1-5.8S-ITS2) and partial LSU DNA (D1-D2 domains) were co-amplified using universal primers ITS5 (forward) and LS5 (reverse). PCR amplifications were performed using two different DNA polymerases—DreamTaq DNA polymerase (Thermo Fisher) and Platinum SuperFi DNA polymerase (Invitrogen). Each primer was tagged with a barcode sequence, generating distinct combinations corresponding to different samples and polymerase conditions. PCR products from both polymerases were purified using the AMPure XP DNA purification kit. The DNA concentration of the purified products was quantified using Qubit™. All purified PCR products were then adjusted to a uniform concentration of approximately 15 ng/µl.

Amplicon High-Throughput Sequencing and Data Analysis

The amplicons were pooled as a basis to construct a unique sequencing library using the SMRTbell Template Prep Kit 1.0. The DNA library were validated by Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA, USA), quantifiedby Qubit 2.0 Fluorometer, and loaded on a PacBio SEQUEL I machine according to manufacturer’s instructions (Pacific Biosciences of California, Inc., California, USA). After obtaining the raw data (file: F.subreads.bam), Circular Consensus Sequences (CCS) were generated from subread sequences using the CCS tool, requiring a minimum of five subreads per sequence. Sample sequences were demultiplexed based on barcode information. To delineate the ITS and D1/D2 LSU regions, all sequences were bioinformatically cleaved at the ITS4 priming sites.
description: Cordyceps

The CCS of 22 samples belonging to Cordyceps were extracted and, within each sample, clustered at 97% using CD-HIT-EST. Sequences within each cluster were then aligned using MUSCLE, and a consensus sequence was generated for each cluster (file: Data_Cordyceps.zip). These data were used for publication in Paloi et al. (2021).
DOI: 10.15468/dl.dck2c7
title: Occurrence Download

description: A dataset containing 251726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Asia, Europe)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Solanum nigrum L."
 ]
}

 The dataset includes 251726 records from 1565 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017488-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.