cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7594541
title: Preclinical evaluation of porcine colon resection using hollow core negative curvature fibre delivered ultrafast laser pulses.

description: <b>Figure 1</b> Schematic representation of colon tissue
layers.<b>Figure 2</b> Schematic
of the laser system for fibre delivered pulses for tissue resection<b></b><br><b>Figure 3</b> Schematic
of the laser system for direct laser resection of tissue a) Schematic of the spiral
scan pattern at the colon tissue surface during picosecond laser ablation <br><b>Figure 4</b> Seven cell NC-HCF fibre (a)
cleaved laser launching surface (b) damaged surface (c) image of light confined
in a single mode at the end face of HC-NCF (20x zoomed image) (d) single mode
beam at the focus of 20 mm focal length lens (20x zoomed image) placed after
the HC-NCF.<br><b>Figure 5</b> coupling efficiency plot of 7 cell HC-NCF<br><b>Figure 6</b> Autocorrelation traces of picosecond laser beam (FWHM = 6ps) with
an input pulse energy of ~42 µJ corresponding to ~29 µJ delivered from the output of
the HC-NCF (Blue line) showing no significant pulse broadening.<br><b>Figure 7 </b>Optical spectra of laser beam of 6 ps pulse width and 42 µJ
pulse energy. 1.5 meter long HC-NCF delivered beam with 6 ps pulse width and
~29 µJ pulse energy (blue line).<br><b>Figure 8</b> (a) and (b)
Three-dimensional surface profile of the laser ablated zone, (c) and (d)
orthogonal depth profiles of the same crater.<br><b>Figure 9</b> Haemotoxylin and eosin (H&E) stained images and 3D
profilometric images of laser ablated zones in different tissues using same
laser parameters. The applied laser fluences are a & c) 18 J/cm<sup>2</sup> b & d)
13 J/cm<sup>2</sup> <sup><br></sup><b>Figure 10</b> The 3D profilometric image of laser ablated area using HC-NCF
delivered pulses on porcine colon samples and histology results of laser
ablated area in different tissue sample with same laser parameters a) 21 J/cm<sup>2</sup>
b) 14 J/cm<sup>2</sup> and c) 7 J/cm<sup>2</sup> laser fluences. The black line
on the image is an artefact after the preparation of sample for histology. The
expanded view of maximum thermal damage in each laser ablated tissue is
presented in the bottom.

 <br>
DOI: 10.17863/cam.56732
title: Dataset for NEMD with automatic shear rate sampling to model viscosity and correction of systematic errors in modeling density: Application to linear and light branched alkanes

description: Density and viscosity results that can otherwise be found in the more concise form in the manuscript. The density sheet comprises experimental values, that have been collected from the TRC Thermodynamic tables, API 44, as well as the molecular dynamics predictions obtained through LAMMPS, and their uncertainties. The viscosity column sheet comprises all the results of viscosity molecular dynamics simulations before fitting to the Carreau model. For each viscosity result, state point (density), shear rate, dynamic and kinematic viscosity and uncertainty in them are listed.
DOI: 10.17863/cam.9113
title: Images for 'Waltham Abbey Panelled Room, Essex'

description: Images of ninety-one of 110 panels from Waltham Abbey Panelled Room (c. 1520s) displayed at Epping Forest District Museum, Essex, before its refurbishment in 2016. The room is on long-term loan from the V&A in London, (museum object number 2011 to Q-1899) with the remaining panels in store. The file names (e.g. Right, column 3, row 2) refer to the location of the panel as it was mounted at EFDM before 2016. Since then the panels have been redisplayed, and 37 panels have been returned to storage at the V&A. It is not clear that the way the panels were mounted then bears any resemblance to their original configuration. The images supplement my article in Essex Archaeology and History Journal. The images are all © the author except the 'Spare Panel' photographs, which are © Victoria and Albert Museum, London.
DOI: 10.17863/cam.42488
title: Volatile Organosulfur Compounds in Sulfidic and Ferruginous Sediments

description: Included in this dataset are measurements of the volatile organosulfur compounds methanethiol (MeSH), dimethyl sulfide (DMS), and dimethylsulfoniopropionate (DMSP) that were measured in ferruginous and sulfidic sediments collected in the Warham Salt Marsh in north Norfolk, UK, in 2016-2017. Data include measurements of DMS and MeSH in homogenized marsh sediments (vosc_homogenized_sediments.csv) treated with various sediment amendments and analyzed using a cryotrapping gas chromatograph at the University of York. There are also measurements of DMS and MeSH for depth profiles of unamended sediments (vosc_depth_profiles.csv) analyzed using GC-FID at the University of East Anglia. There are also measurements of DMSP for these sediments (dmsp_depth_profiles.csv). Finally, concentrations of both DMS and MeSH for sediments measured at different times after sampling are reported (vosc_time_degradation.csv). For all reported values, they are reported both as the measured headspace concentration above slurried sediment as well as the calculated total amount of gas (nmol) in the headspace and added water per ml of sediment that was sampled.
DOI: 10.5281/zenodo.14506205
title: Datasets for article: "Improved evaluation of synthetic protein-protein interactions with AlphaFold guided by ProteinMPNN"

description: Supplementary data:



Models of designed or crystallized binding complexes

ProteinMPNN-based multiple sequence alignments

Predictions with AlphaFold-Multimer (AFM) and AFM-ProteinMPNN

Accuracy scores for all structure predictions


Authors: Lourdes Carcelén*, Alexandre Casadesús* and Enrique Marcos

*These authors contributed equally to this work

Correspondence to: embcri@ibmb.csic.es
DOI: 10.5281/zenodo.14506206
title: Datasets for article: "Improved evaluation of synthetic protein-protein interactions with AlphaFold guided by ProteinMPNN"

description: Supplementary data:



Models of designed or crystallized binding complexes

ProteinMPNN-based multiple sequence alignments

Predictions with AlphaFold-Multimer (AFM) and AFM-ProteinMPNN

Accuracy scores for all structure predictions


Authors: Lourdes Carcelén*, Alexandre Casadesús* and Enrique Marcos

*These authors contributed equally to this work

Correspondence to: embcri@ibmb.csic.es
DOI: 10.17863/cam.7094
title: Research data supporting "Non-destructive Determination of Disintegration Time and Dissolution in Immediate Release Tablets by Terahertz Transmission Measurements"

description: The datasets include the dissolution data (only a subset of the 18 batches were measured as indicated in the dataset) and the data from the terahertz measurements.
DOI: 10.17863/cam.64901
title: Research data supporting RESIST publication "Tracking Stress, Mental Health and Resilience Factors in Medical Students, Before, During and After a Stress-Inducing Exam Period: Protocol and Proof of Principle Analyses for the RESIST Cohort-Study". (Taken from Resilience Study (RESIST): What Helps Students to Adapt to Exam Stress?)

description: A detailed description of the data can be found in the belonging data description, with the name "RESIST_PoPA_Handbook_2021.02Feb.17".
DOI: 10.17863/cam.83114
title: Data For:Tuning the coherent propagation of organic exciton-polaritons through dark state delocalization

description: Raw data associated with Figures 1 and 2 of main text and supporting information. Origin/Excel files containing raw data underlying figures. Absorption, reflectivity spectra of cavities, angle depdt. reflectivity, fs-TA spectra and associated fits from kinetics, raw TA microscopy data as well as processed kinetics and mean square displacement plots.
DOI: 10.17863/cam.71364
title: Research data supporting Giant photoluminescence enhancement in MoSe2 monolayers treated with oleic acid ligands

description: Main_Fig1b-d_SI_Fig8: Photoluminescence scatter data, Meidan PL spectra absolute, Median PL spectra scaled to compare FWHM; and Raman spectra Main_Fig2a-d_Fig3a-f: PL intensity series spectra, PL intensity series, relative PLQE series and; PL species characterization Main_Fig4a-b_SI_Fig5a-b_SI_Fig6: Time resolved PL spectra, Time resolved PL fluence series and; all Time resolved PL spectra from series Main_Fig5a: Transistor transfer characteristics Main_Fig5b: Transistor threshold voltage Main_Fig5c: Transistor sub-threshold swing Main_Fig5d: Transistor on/off ratio SI_Fig1: PL spectra of WS2 monolayers washed with toluene SI_Fig3-4_All_data: PL spectra from intensity series fitted with Gaussians SI_Fig7: Oleic Acid treated tungsten diselenide spectra
DOI: 10.17863/cam.86061
title: Research data supporting "Reducing unitary coupled cluster circuit depth by classical stochastic amplitude prescreening"

description: Data used to construct figures and tables in "Reducing unitary coupled cluster circuit depth by classical stochastic amplitude prescreening". The HANDE folder contains HANDE output files (.out) and necessary integral files (FCIDUMP). The screening_results folder contains amplitude files (.dat) resulting from the HANDE calculations and then used for VQE screening. All other folders contain screened VQE results corresponding to the system in the folder name (.csv) and the python scripts needed to generate figures from them (.py).
DOI: 10.5281/zenodo.14499871
title: Systematic Literature review
DOI: 10.5281/zenodo.14499870
title: Systematic Literature review
DOI: 10.17863/cam.110541
title: Research data supporting GIBBERELLIN PERCEPTION SENSOR 2 reveals genesis and role of cellular GA dynamics in light-regulated hypocotyl growth

description: This dataset corresponds to the final figures from ‘GIBBERELLIN PERCEPTION SENSOR 2 reveals genesis and role of cellular GA dynamics in light-regulated hypocotyl growth’ by Jayne Griffiths, Annalisa Rizza, Bijun Tang, Wolf B. Fromer and Alexander M. Jones. Data was collected at Sainsbury Laboratory, Cambridge University between approximately April 2019 and October 2023. Any queries on the data can be emailed to Alexander M Jones (alexander.jones@slcu.cam.ac.uk), the principal investigator on the project, or Jayne Griffiths (jayne.griffiths@slcu.cam.ac.uk), the lead author. Notes on the dataset: All data is placed under a CC-BY-NC 4.0 International license. Methods are detailed fully in the paper but include: Confocal microscopy, Advanced image analysis, Arabidopsis hypocotyl phenotyping, RT-qPCR. Microscopy data was analysed with Fiji and FRETENATOR1.5 as detailed in the paper. Due to size constraints we have been unable to include all of our analysis but we have tried to include original image files as lif or tif files with excel files containing processed data. The metadata file includes the settings that were used to process the images using the FRETENATOR plugin in ImageJ (See software for link). Whilst we have included all experiments and replicates that are included in the paper, data storage constraints meant we could not place our independent repeats of the experiments on this drive. These other replicates can be made available on request. Image sequences from the IR rig are collected into .zip/.7z files which can be opened with a (de)compression program such as 7-zip. These files are organised by Figure.
DOI: 10.17863/cam.99102
title: Research Data supporting "A detailed comparison of (RE)-Ba-Cu-O bulk superconductors dataset"

description: This contains detailed compositition data from the locations described in the publication. Abstract of related publication: The homogeneity of the microstructure and composition are critical in determining the properties of rare earth-barium-cuprate, single grain bulk superconductors [(RE)BCO]. The magnitude of the trapped magnetic field achieveable in these technologically important materials, in particular, is influenced heavily by the size and distribution of (RE)2BaCuOx (RE-211) flux pinning inclusions in the bulk microstructure, whereas the size and distribution of silver agglomerates present within the bulk superconducting matrix correlate directly with improved mechanical properties. With careful engineering, these materials have significant potential for application in range of devices related to energy storage, medicine, electro-magnetic machinery and microelectronic technology. Fabrication of (RE)BCO bulk superconductors typically involves heating a powder compact above its peritectic decomposition temperature followed by slow cooling to facilitate the growth of a single grain. Each (RE)BCO composition has a different peritectic temperature and growth rate, which, therefore, necessitates different requirements in the heating profile. The fabrication temperature and growth rate, for example, may have an effect on the RE-211 and silver distribution, which may, in turn, affect the superconducting properties of the resulting single grain. In this work we compare the distributions of silver and RE-211 in the single grain microstructures of YBCO-Ag, GdBCO-Ag, EuBCO-Ag and SmBCO-Ag bulk superconductors using optical microscopy, scanning electron microscopy and energy dispersive X-ray spectroscopy. We observe that the distributions are very similar along both the a/b-axis and c-axis of these materials. This suggests that factors other than the maximum temperature used to achieve peritectic decomposition and the rate of single grain growth are particularly influential in determining the properties of the as-processed samples in the top seeded melt growth process. This observation demonstrates there is freedom to use (RE) materials interchangeably between different applications as required, for example, for functional or economic reasons.
DOI: 10.17863/cam.31779
title: Research data supporting "Investigation of the intrinsic permeability of ice-templated collagen scaffolds as a function of their structural and mechanical properties"

description: The record contains a sample stack of images of a 0.75wt% collagen scaffold. These images were obtained from 3D micro-CT scanning of the scaffold. They were imported on ImageJ with Fiji and they were image processing was carried out. They were segmented to distinguished between the pores and walls and image filtering was applied to ensure that the images were smooth. Once they were processed, the images were analysed for pore sizes, percolation diameter, interconnectivity and tortuosity.
DOI: 10.17863/cam.72011
title: A reliable technique to fabricate superconducting joints between single grain, Y–Ba–Cu–O bulk superconductors dataset

description: This contains trapped field data and trapped field profiles associated with a paper submission on joining of bulk superconductors. The trapped field profiles were measured using a rotating hall probe array at a distance approximately 1.5 mm from the surface of the bulk superconductor. The samples were zero field cooled to 77 K with a field of 1.4 T. Samples were maintained at a temperature of 77 K for the duration of the measurements.
DOI: 10.17863/cam.52923
title: Research data supporting Fast Spin-Flip Enables Efficient and Stable Organic Electroluminescence from Charge-Transfer States

description: The data sets stored here accompany the related research article, showing details of photophysical properties and device characterization
DOI: 10.17864/1947.001382
title: Integrating food and energy production on farmland: database of decision support tools (DSTs)

description: Decision support tools (DSTs) can be used by farmers to support decision making on-farm through a wide range of processes and activities. Value4Farm is a collaborative initiative funded by the EU Horizon Europe program and aims to increase on-farm renewable energy production while preserving food production, soil health, biodiversity, and reducing water and fertiliser usage. This research sought to explore the range of DSTs available to farmers to support food and energy production and the integration of food and energy production on farmland. 

A search of databases, including Web of Science, online education providers, organisations working with farmers and publications was undertaken and a range of DSTs focusing on aspects of food and energy production were identified. A variety of features of each DST was explored and recorded, including its aims, methods of use and geographical scope. 

This spreadsheet contains a full list of DSTs identified and evaluated, with a brief description of the DST, its scope and purpose for users, the process and outputs users receive from the DST, languages the DST interface is available in, the cost to farmers for using the DST and a link to the DST.
DOI: 10.17863/cam.47728
title: Supporting data for "Single-photon emission from single-electron transport in a SAW-driven lateral light-emitting diode"

description: Methods are described in the paper. Folders 'Figure 1' to 'Figure 4' contain the data used for plotting the figures 1-4 in the paper "Single-photon emission from single-electron transport in a SAW-driven lateral light-emitting diode". Folder 'HBT histogram' contains the organised raw HBT histogram Folder 'Time-resolved optical measurement' contains the raw time-resolved measurement histogram. Folder 'Matlab scripts' contains the Matlab scripts for data processing and fitting.
DOI: 10.17863/cam.26037
title: Research data supporting "The Apatite Forming Ability of Micro- and Nanocomposites of α-Tricalcium Phosphate/Poly (D,L-lactide-co-glycolide)"

description: Bioresorbable composite. This dataset supplements the original dataset associated with the publication "The Apatite Forming Ability of Micro- and Nanocomposites of α-Tricalcium Phosphate/Poly (D,L-lactide-co-glycolide)" and that is available at $\href{https://doi.org/10.17863/CAM.25790}{\text{https://doi.org/10.17863/CAM.25790}}$.
DOI: 10.15468/dl.h4aess
title: Occurrence Download

description: A dataset containing 73309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-5.87375 37.56306,-6.45854 36.74056,-5.89669 35.97413,-5.30044 36.09467,-5.11697 36.45518,-4.2914 36.67621,-4.87618 37.36283,-5.65589 37.61758,-5.87375 37.56306))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 73309 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037612-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.86890
title: UK and Ireland Computing Teacher Survey Dataset 1

description: This dataset is a subset of the data from 512 computing teachers from UK and Ireland who completed a survey in March 2022. The analysis of the data is described in the paper above. Abstract Many countries have increased their focus on computing in primary and secondary education in recent years and the UK and Ireland are no exception. The four nations of the UK have distinct and separate education systems, with England, Scotland, Wales, and Northern Ireland offering different national curricula, qualifications, and teacher education opportunities; this is the same for the Republic of Ireland. The motivation for this paper was a need to investigate the status of computing education in these countries and the experiences of computing teachers. A validated international survey instrument, METRECC, was localised for this study, with 512 completed responses received from teachers across all five countries, as well as data relating to each country's curriculum and requirements for teacher education. The initial results of this first UK and Ireland survey demonstrate distinct differences in the experiences of the computing teachers surveyed that were in line with the policy and provision for computing education in that country. This paper increases our understanding of the differences in computing education provision and training in schools across the five jurisdictions, and highlights opportunities for researchers, practitioners, and policymakers across the UK and Ireland to collaborate and learn from each others' experiences of computing in school.
DOI: 10.17863/cam.43804
title: Raw Data supporting article: Inverse opal CuCrO2 photocathodes for H2 production using organic dyes and a molecular Ni catalyst

description: Electrochemical data and results for all measurements presented in the manuscript and supporting information (chronoamperometry, linear sweep voltammetry, incident photon-to-current efficiency measurements, gas chromatography analysis), characterisation of CuCrO2 structures (scanning electron microscopy, Brunauer–Emmett–Teller gas adsorption measurements, transmission electron microscopy, X-Ray diffractommetry, UV-Vis sepctroscopy), and determination of molecular loading (UV-Vis dye desorption calibration and samples, inductively coupled plasma optical emmision spectroscopy data).
DOI: 10.17863/cam.52041
title: Raw numerical output "Predicting shear failure in reinforced concrete members using a three-dimensional peridynamic framework"

description: Corresponding Journal Paper: Predicting shear failure in reinforced concrete members using a three-dimensional peridynamic framework These files contain the raw numerical output used to create Figures 12 to 18. Load-Deflection Graphs: - each file contains the following data in column format [Load (N), Deflection (mm)] &gt;&gt; Stuttgart_Beam_3_normal_mesh.txt &gt;&gt; Stuttgart_Beam_3_fine_mesh.txt &gt;&gt; Stuttgart_Beam_5_normal_mesh.txt &gt;&gt; Stuttgart_Beam_5_fine_mesh.txt &gt;&gt; Stuttgart_Beam_7_normal_mesh.txt &gt;&gt; Stuttgart_Beam_7_fine_mesh.txt Numerical Fracture Patterns: - each file contains the following data in column format [Node ID, undeformed coordinates (XYZ), deformed coordinates (XYZ), damage] &gt;&gt; Stuttgart_Beam_1_normal_mesh_damage.txt &gt;&gt; Stuttgart_Beam_2_normal_mesh_damage.txt &gt;&gt; Stuttgart_Beam_3_normal_mesh_damage.txt &gt;&gt; Stuttgart_Beam_3_fine_mesh_damage.txt &gt;&gt; Stuttgart_Beam_4_normal_mesh_damage.txt &gt;&gt; Stuttgart_Beam_5_normal_mesh_damage.txt &gt;&gt; Stuttgart_Beam_5_fine_mesh_damage.txt &gt;&gt; Stuttgart_Beam_6_normal_mesh_damage.txt &gt;&gt; Stuttgart_Beam_7_normal_mesh_damage.txt &gt;&gt; Stuttgart_Beam_7_fine_mesh_damage.txt &gt;&gt; Stuttgart_Beam_8_normal_mesh_damage.txt &gt;&gt; Stuttgart_Beam_10_normal_mesh_damage.txt
DOI: 10.17863/cam.12400
title: Data for "Shape and Energy Consistent Pseudopotentials for Correlated Electron systems"

description: Code and data for the generation and testing of pseudopotentials accurate for use in abinitio correlated electron calculations. Generated pseudopotentials are included, together with the results of accuracy tests for a set of small molecules using both coupled-cluster and density functional theory.
DOI: 10.15468/5jvtfw
title: Arthropod communities of island vs. mainland coastal grasslands: São Miguel Island (Azores) and Mainland Portugal

description: The present work provides an inventory of the arthropods recorded in two distinct coastal grasslands ecosystems: São Miguel Island (Azores Archipelago), and Setúbal district on Portugal mainland (Sesimbra and Sines regions). Thirthy-one plots were selected (13 on São Miguel island, 13 across Sesimbra region, and 6 on Sines region). The plots were visited four times, between spring and summer 2022. A total of 13,515 arthropod specimens were collected (Azores = 7,861; Mainland = 5,654), belonging to 534 species and morphospecies. In the Azores, 210 species and morphospecies belonging to three classes were collected: Arachnida (22), Diplopoda (1), and Insecta (187). On the mainland a total of 391 species and morphospecies were collected, belonging to two classes: Arachnida (55), and Insecta (336). In total, 67 species were common between the two studied areas.