cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.cp31tg6/2
title: Dataset2a

description: Contains data for observation accrual rate analyses

month.ordinal.upload = unique ID for month of upload
project.launch = whether observation comes from before or after the launch of the project
focal.species = 1 if the focal species (e.g. demoiselles)
month.upload = month of upload (raw)
observation.count = number of observations submitted during the month
project = iNaturalist project page corresponding to data
DOI: 10.5061/dryad.cp31tg6/3
title: Dataset2B

description: Contains data for observation accrual rate analyses

month.ordinal.upload = unique ID for month of upload
project.launch = whether observation comes from before or after the launch of the project
focal.species = 1 if the focal species (e.g. demoiselles)
month.upload = month of upload (raw)
observation.count = number of observations submitted during the month
project = iNaturalist project page corresponding to data

new.recruit = 1 if individuals whose first observations in our dataset were of a focal species after the project launch date
DOI: 10.5061/dryad.cp31tg6/4
title: Dataset3a

description: Contains data for case study

inaturalist.id = id of observation from iNaturalist.org
julian.date.wyear = julian date including year
julian.date = julian date used in analyses
month = month 
latitude = decimal latitude
longitude = decimal longitude
site.id = unique ID for site
region = region assigned for analyses (for smoky rubyspot analyses, see main text)
scientific_name = scientific name
perched.tw = the total proportion of the surface of wings that is visible in perched photos
perched.hw = the total proportion of the isolated hindwing that is visible in perched photos
perched.hw_interpolated = perched.hw data with missing points interpolated from regression analyses
DOI: 10.5061/dryad.cp31tg6/5
title: Dataset3b

description: Contains data for case study

inaturalist.id = id of observation from iNaturalist.org
julian.date.wyear = julian date including year
julian.date = julian date used in analyses
month = month 
latitude = decimal latitude
longitude = decimal longitude
site.id = unique ID for site
sympatric = whether observation is from zone of sympatry for two demoiselles (for banded demoiselle analyses, see main text)
scientific_name = scientific name
perched.tw = the total proportion of the surface of wings that is visible in perched photos
perched.hw = the total proportion of the isolated hindwing that is visible in perched photos
perched.tw_interpolated = perched.tw data with missing points interpolated from regression analyses
perched.hw_interpolated = perched.hw data with missing points interpolated from regression analyses
DOI: 10.5061/dryad.f2kh311/10
title: Analysis

description: All analyses of results reported in the published paper.
DOI: 10.5061/dryad.f2kh311/3
title: Chrm1_Data

description: Dataset of validated chromosome 1 measures. Each row corresponds to a chromosome 1 bivalent. ‘boxNumber’ records the assigned index from DNACrossOver or if the bivalent was measured by hand. All values are in pixels, except SC.length.um. IFD stands for ‘Interfocal distance’ and reports the distance between the first and second (IFD1) or second and third MLH1 focus (IFD2).
DOI: 10.5061/dryad.f2kh311/4
title: MLH1_Data

description: Full dataset for MLH1 quantification from spermatocyte spreads. Each row corresponds to a cell image. ‘Batch’ refers to the quantification set which used a randomly assigned name. Quality is a manually assigned score, 1 given to highest quality cells to 5 low quality cells.
DOI: 10.5061/dryad.f2kh311/5
title: Bivalent Data

description: Output of all images run through DNACrossOver. Each row corresponds to a bivalent-object measure. Each foci identified within the bivalent-object has an absolute and percent position and intensity value. These measures have not been validated.
DOI: 10.5061/dryad.f2kh311/6
title: Permutations

description: Script for running permutations for analyses.
DOI: 10.5061/dryad.f2kh311/7
title: CommonFunc

description: Common functions called within the analysis scripts.
DOI: 10.5061/dryad.f2kh311/8
title: DataSetup

description: Setting up the data for analysis and display.
DOI: 10.5061/dryad.f2kh311/9
title: IsolateChrm1

description: Script used to make a list of putative chromosome 1 measures for manual curation.
DOI: 10.5061/dryad.h02f9j9/1
title: Data for Experiment 1

description: Data collected in the field on a habituated population of dwarf mongooses. Data in this spreadsheet was used for the analyses in Experiment 1.
DOI: 10.5061/dryad.h02f9j9/2
title: Data for Experiment 2

description: Data collected in the field on a habituated population of dwarf mongooses. Data in this spreadsheet was used for the analyses in Experiment 2.
DOI: 10.5061/dryad.h69t34v/1
title: OutputsBenchmark

description: Contains the outputs of the benchmark simulation.
DOI: 10.5061/dryad.h69t34v/2
title: OutputsPolicy1

description: Contains the outputs of the simulation with the implementation of Policy 1
DOI: 10.5061/dryad.h69t34v/3
title: OutputsPolicy2

description: Contains the outputs of the simulation with the implementation of Policy 2
DOI: 10.5061/dryad.h69t34v/4
title: sensitivityAnalysisData

description: Contains the data for the 5-parameter sensitivity analysis.
DOI: 10.5061/dryad.mh4vh5v/1
title: Miller et al. 2019. Model_code_and_data

description: This additional material provides data used and reproducible code for models.
DOI: 10.5061/dryad.r79k7sc/2
title: Dryad_DATA

description: climatic_past, climatic_present, continental areas data, nonclimatic_clay data. We also provided four README files for each data.
DOI: 10.5061/dryad.t4g871v/10
title: adjusted_16km_allvars

description: 16km landscape data for: Paton GD, Shoffner AV, Wilson AM, Gagné SA. Data from: The traits that predict the magnitude and spatial scale of forest bird responses to urbanization intensity.
DOI: 10.5061/dryad.t4g871v/6
title: adjusted_6km_allvars

description: 6km landscape data for: Paton GD, Shoffner AV, Wilson AM, Gagné SA. Data from: The traits that predict the magnitude and spatial scale of forest bird responses to urbanization intensity.
DOI: 10.5061/dryad.t4g871v/7
title: adjusted_8km_allvars

description: 8km landscape data for: Paton GD, Shoffner AV, Wilson AM, Gagné SA. Data from: The traits that predict the magnitude and spatial scale of forest bird responses to urbanization intensity.
DOI: 10.5061/dryad.t4g871v/8
title: adjusted_10km_allvars

description: 10km landscape data for: Paton GD, Shoffner AV, Wilson AM, Gagné SA. Data from: The traits that predict the magnitude and spatial scale of forest bird responses to urbanization intensity.
DOI: 10.5061/dryad.t4g871v/9
title: adjusted_12km_allvars

description: 12km landscape data for: Paton GD, Shoffner AV, Wilson AM, Gagné SA. Data from: The traits that predict the magnitude and spatial scale of forest bird responses to urbanization intensity.
DOI: 10.17632/4vr6w8btgh.1
title: Data for: Late Cretaceous-Paleocene stratigraphic and structural evolution of the central Mexican fold and thrust belt, from detrital zircon (U-Th)/(He-Pb) ages

description: Detrital zircon geo- and thermochronology data from central Mexican fold-thrust belt.
DOI: 10.17632/67fr4xcdx9.1
title: Data for: Assessment of sedimentary heterocyst glycolipids to trace freshwater input to the Changjiang Estuary and East China Sea

description: This is a data table for the paper Assessment of sedimentary heterocyst glycolipids to trace freshwater input to the Changjiang Estuary and East China Sea. Items includes: sample ID, longtitude, latitude, water depth, salinity, TOC content, organic carbon isotope, BIT index and contents of heterocyst glycolipid.
DOI: 10.17632/r8j84ksgf9.1
title: Data for: Effect of Morning Blood Pressure Peak on Early Progressive Ischemic Stroke: A Prospective Clinical Study

description: This is our main database of this research.
DOI: 10.17632/ynv5x5gydd.1
title: Data for: The Effect of Petroleum Product Price Regulation on Macroeconomic Stability in China
DOI: 10.17632/z856bdmppn.1
title: Data for: RADIUM ISOTOPES FOR GROUNDWATER AGE AND SUSTAINABILITY IN THE HIGHLAND OF ANTANANARIVO, MADAGASCAR

description: Raw data and indication of the software to open and analyse these data.
DOI: 10.5061/dryad.1j61k78/1
title: Ma. et al. 2019
DOI: 10.5061/dryad.1r237v7/1
title: Rupo - Data Base
DOI: 10.5061/dryad.2fr72sb/1
title: Labelled triaxial magnetometer data

description: Paper: "Behavioural compass: animal behaviour recognition using magnetometers" Authors: Pritish Chakravarty, Maiki Maalberg, Gabriele Cozzi, Arpat Ozgul, Kamiar Aminian ----------------------------------------------------------- A guide to accessing and using the labelled, calibrated, windowed (sliding window of length two seconds with 50% overlap between successive windows) magnetometer data supplied: A .mat file is supplied, which can be opened with MATLAB. There is one variable within named "sessionWiseMagData_fourBehaviours". It is a cell with eleven entries, corresponding to the eleven recording sessions done for this study. Let "rs" denote the recording session number (rs = 1, 2, 3...11). sessionWiseMagData_fourBehaviours{rs} is a cell with four entries. Let "b" denote the behaviour number (b = 1,2,3,4 where 1 corresponds to vigilance, 2 to resting, 3 to foraging, and 4 to running). Then sessionWiseMagData_fourBehaviours{rs}{b} contains all the two-second bouts of calibrated triaxial magnetometer data recorded for behaviour "b" during recording session "rs". Since magnetometer data was resampled to 100 Hz, each entry sessionWiseMagData_fourBehaviours{rs}{b}{i}, which denotes the i-th two-second bout of video-labelled behaviour "b" recorded during recording sessions "rs", is a matrix of size 200x3, where 200 denotes 2s*100 entries/axis/second, and 3 denotes the number of axes of the magnetometer). Note that feature computation was done on each of these 82550 two-second bouts of labelled triaxial magnetometer data for the four behaviours of interest.
DOI: 10.5061/dryad.2fr72sb/2
title: Feature matrices

description: Paper: "Behavioural compass: animal behaviour recognition using magnetometers" Authors: Pritish Chakravarty, Maiki Maalberg, Gabriele Cozzi, Arpat Ozgul, Kamiar Aminian ----------------------------------------------------------- A note on the feature matrices supplied: - There are two Excel files. "allFeatures.xlsx" contains all nine features (Table 1 in main manuscript) considered in this study. "top3features.xlsx" contains the top three features (feature selection details in Appendix 3, Additional File 1), and is supplied for convenience. - The first row of each Excel file contains the header, arranged as: {feature names, behaviour label, recording session number). Each subsequent row contains feature values computed over a two-second window of triaxial magnetometer data. Both Excel files have the same number of rows, and the same row number refers to the same two-second window of triaxial magnetometer data across both files. - The behaviour labels are as follows. 1: vigilance; 2: resting; 3: foraging; 4: running. - The last column contains the recording session number corresponding to each two-second window of magnetometer data. Data were collected over 11 recording sessions (Table 2 in main manuscript), so the last column contains integer values from 1 to 11.
DOI: 10.5061/dryad.2hp1978/1
title: Butterfly photographs from Hoyal Cuthill et al 2019 Science Advances

description: 2468 photographs of butterfly specimens from subspecies of the species Heliconius erato and Heliconius melpomene. Butterfly specimens are held in the collections of the Natural History Museum, London (NHM). File names correspond to NHM specimen numbers. Additional joined data including subspecies identity is shown in Table S2 (Hoyal Cuthill et al 2019). A dorsal (upper, labelled D) and ventral (lower, labelled V) photograph is included for each butterfly specimen. Please cite the associated journal paper (Hoyal Cuthill et al 2019) in any reference to these images. Photographers: Robyn Crowther and Sophie Ledger, Natural History Museum, London.
DOI: 10.5061/dryad.2hp1978/2
title: Table S2 from Hoyal Cuthill et al 2019 Science Advances

description: Table S2. Taxonomic and locality data recorded for historical specimens of Heliconius erato and Heliconius melpomene held in the collections of the Natural History Museum (NHM), London. Where approximate latitude and longitude of the capture locality were not recoverable from the recorded locality data (6% of specimens), longitude and latitude are marked NaN. Hybrid status is recorded based on additional taxonomic information recorded on specimen labels, NHM records and the taxonomic checklist of Lamas, 2004 and www.buttefliesofamerica.com (bold).
DOI: 10.5061/dryad.2hp1978/3
title: Supplementary Computer Code ipynb format

description: Supplementary Computer Code from Hoyal Cuthill et al 2019 Science Advances containing the Python scripts used for deep learning in ipynb file format. Please cite this associated journal paper in all references to this code.
DOI: 10.5061/dryad.310m5qj/1
title: Data_Biotropica_Are_Cecropia_Trees
DOI: 10.5061/dryad.3f83707/1
title: Rodentia Concatenated Alignment for RAxML

description: This is the concatenated alignment in phylip format used for RAxML.
DOI: 10.5061/dryad.3f83707/2
title: Charsets file for concatenated alignment

description: Charsets file for concatenated alignment used for RAxML
DOI: 10.5061/dryad.3f83707/3
title: Rodentia UCE locus alignments

description: Rodentia UCE alignments by locus in nexus format.
DOI: 10.5061/dryad.3f83707/4
title: RAxML concatenated and calibrated tree

description: RAxML concatenated tree with treePL divergence time estimation using fossil constraints listed in Table 1.
DOI: 10.5061/dryad.3f83707/5
title: RAxML concatenated best tree

description: Uncalibrated RAxML concatenated tree file
DOI: 10.5061/dryad.3gp17g0/1
title: Data used in analysis

description: Results of behavioral trials in both blue-green and orange-red experiments.
DOI: 10.5061/dryad.4qn2338/1
title: Dragons pictus ROS_SPSS_To submit BEHECOL
DOI: 10.5061/dryad.6897qf2/1
title: Repeatability of the metabolic rate over two measurments

description: The data set contains rows corresponding to each gammaridae individuals and columns corresponding to the variables including: the identity of individuals (Indiv), the metabolic rate (Respi), the temperature in Celsius degree (Temp), the inverse temperature corresponding to the Boltzman equation (InvTem), the body mass (Masse) and the identity of the measurement/trial (Essai). Please note that metabolic rates were corrected by control measurements which has created some negative values and "NA" values correspond to dead individuals and outliers points that have been removed.
DOI: 10.5061/dryad.6kc0424/1
title: Wysocki Blackbirds LRS

description: raw data concerning factors that we analysed
DOI: 10.5061/dryad.6rg781m/7
title: Supplemental File 1

description: Dataset.
DOI: 10.5061/dryad.7mc125c/1
title: Twining et al 2019 Fun Ecol_data supplement

description: Raw bulk stable isotope data, compound-specific stable isotope data, fatty acid data, and growth rate data
DOI: 10.5061/dryad.84bq56t/1
title: GBIF_Thinned_2

description: A flat file of 70299 records of terrestrial mammals of Panama to Canada, containing the Global Biodiversity Information Facility and IUCN taxonomies, the decimal latitude and longitudes of each observation, and the values of four bioclimatic variables for each pair of unique coordinates. Please see README file for further details.
DOI: 10.5061/dryad.88d5v17/1
title: Villar_et_al_JoEco2019_data

description: Datasets used to estimate the effects of defaunation from functionally distinct large herbivores on the spatiotemporal structure of seedling communities in the Atlantic Forest of Brazil
DOI: 10.5061/dryad.8kb68mr/1
title: Supplementary Data 1

description: List of stratigraphic and geographic occurrences of the analyzed material
DOI: 10.5061/dryad.9g08bm7/1
title: occurrencedata

description: This file contains the cleaned and processed occurrence records of the ten myctophid species modelled in the study and present day environmental conditions associated to each presence locality. Please refer to the README file for further details.
DOI: 10.5061/dryad.9g08bm7/2
title: backgrounddata

description: This file contains the backgound data points used by the MaxEnt modelling algorithm and the present day environmental conditions associated to each background location. 10,000 background data points were selected randomly within 2 decimal degrees of mesopelagic fish records across the study region to control for spatial sampling bias. Please refer to the README file for further details.
DOI: 10.5061/dryad.b1qd22n/1
title: Wesselingh_2019_Rhinanthus_germination_lab

description: results of germination trial in laboratory
DOI: 10.5061/dryad.b1qd22n/2
title: Wesselingh_2019_Rhinanthus_hybrids_field_emergence_survival

description: results of field transplant experiment: emergence of seedlings and survival until flowering
DOI: 10.5061/dryad.b1qd22n/3
title: Wesselingh_2019_Rhinanthus_hybrids_field_flowers_seeds

description: field transplant: flower and seed production of surviving plants
DOI: 10.5061/dryad.b1qd22n/4
title: Wesselingh_2019_Rhinanthus_hybrids_greenhouse_flowers

description: flower production of plants in the greenhouse in 2013
DOI: 10.5061/dryad.b1qd22n/5
title: Wesselingh_2019_Rhinanthus_hybrids_greenhouse_2014_flowers

description: flower production by plants in the greenhouse in 2014
DOI: 10.5061/dryad.b3g0n1j/1
title: Cross-target responses to tongue protrusion and lipsmacking models in neonatal macaques

description: CSV file with cross-target responses to tongue protrusion and lipsmacking models (adapted from Paukner et al., 2017)
DOI: 10.5061/dryad.c0n5hm8/1
title: WilliamsandBoyle_AnimalBehavior_Dryad

description: Data from: Williams,EJ, Boyle WA, Causes and consequences of avian within-season dispersal decisions in a dynamic grassland environment, Animal Behavior. Files contain data and R code used to complete analyses described in the manuscript. Note: File folders and files are organized by how they are described in the Analyses section of the manuscript.
DOI: 10.5061/dryad.cv1jg30/1
title: Data used in Zellweger et al. 2019 GEB
DOI: 10.5061/dryad.nn9410n/1
title: R-scripts for all Neutral simulations

description: The following repository contains R code for a ecological simulation of biodiversity offsets using neutral theory.

Please note that this code only contains the backbone algorithms for the neutral simulation, and has been shortened for illustrative purposes (i.e. the time series is shorter, there are fewer iterations, and the code only simulates the outputs for one combination of parameters).

Running this code will take approximately 3-5 minutes of computation time depending on your machine. There is a reporter that counts the number of iterations (Note: this counter does not report the duration of the time-series).

The complete simulation as presented in the manuscript took several hours and was run on several cloud-based RStudio servers using Amazon Web Services.
DOI: 10.5061/dryad.p1k2426/1
title: Scharf et al Laterality Dataset

description: Dataset for Scharf et al 2018
DOI: 10.5061/dryad.rr48616/4
title: Supplemental Material S1

description: Synchrotron tomographic data including modified images that were used to generate SPIERS files along with SPIERSedit and SPIERSview files and animation of specimen with internal structures outlined in blue.
DOI: 10.5061/dryad.rr48616/5
title: Supplemental Material S2

description: List of characters that were utilized in the phylogenetic analysis of taxa.
DOI: 10.5061/dryad.rr48616/6
title: Supplemental Material S3

description: Character matrixes utilized for phylogenetic analyses. Mesquite was used to organize and examine the data and PAUP was used to execute phylogenetic analyses. Both files are included.
DOI: 10.5061/dryad.rr48616/7
title: Supplemental Material S4

description: . Includes the maximum parsimony strict consensus tree and single maximum likelihood tree with labeled nodes that correspond to the associated document that lists out all supporting characters for each of the nodes in detail. Underneath are the four most parsimonious trees recovered from the maximum parsimony analysis.
DOI: 10.5061/dryad.s284591/3
title: Squirrel Stress Plasticity Dryad Code

description: Code
DOI: 10.5061/dryad.s284591/4
title: Squirrel Stress Plasticity Dryad

description: Raw Data
DOI: 10.5061/dryad.t44073r/1
title: SAWECKI-2019-Reproduction-and-Oxidative-Stress-in-a-Mouthbrooding-Cichlid-Fish

description: This zip file contains two excel documents. One document used for analysis of female oxidative stress and the other for analysis of the male status shifts in stable and unstable environments. There are also 4 R scripts that were used for running linear mixed models and generalized linear mixed models.
DOI: 10.5061/dryad.t4g871v/11
title: 2ndPA_BirdAtlas_bird_counts

description: Point Count bird data for Second Atlas of Breeding Birds in Pennsylvania (2004-2009), Wilson et al. 2012. Wilson, A.M., D.W. Brauning and R.S. Mulvihill (eds). 2012. Second Atlas of Breeding Birds in Pennsylvania. Penn State Press, University Park, PA. NOTE: Count duration was 6 minutes and 15 seconds (5 times 75 second time bands) Singing birds were recorded in time bands There were two distance bands: &lt;75 m, &gt; 75 m (unlimited) Data for 33, 766 point count locations.
DOI: 10.5061/dryad.t4g871v/12
title: 2ndPA_BirdAtlas_pointcount_location_and_conditions

description: Point Count location information for Second Atlas of Breeding Birds in Pennsylvania (2004-2009), Wilson et al. 2012 Wilson, A.M., D.W. Brauning and R.S. Mulvihill (eds). 2012. Second Atlas of Breeding Birds in Pennsylvania. Penn State Press, University Park, PA. Data for 33,766 point count locations.
DOI: 10.5061/dryad.v3b36nh/1
title: RAD-et-al-PatThrt_README for all data files

description: This file explains all of the information contained in the data files associated with DiSciullo RA, Thompson CF, and Sakaluk SK. 2019. Perceived threat to paternity reduces likelihood of paternal provisioning in house wrens.
DOI: 10.5061/dryad.v3b36nh/2
title: RAD-et-al-PatThrt_intruder trial data

description: These are the behavioral data scored from videos of the paternity threat/intruder trials.
DOI: 10.5061/dryad.v3b36nh/4
title: RAD-et-al-PatThrt_provisioing effort-by-sex

description: These are the same behavioral data found in the RAD-et-al-PatThrt_prov.csv file, but the number of all prey items brought by the male and female has been summed within the file, and the data have been reformatted to make it easier for analysis in R.
DOI: 10.5061/dryad.vm447nm/1
title: Maror1_genome_assembly

description: Version 1 genome assembly of the fairy ring mushroom Marasmius oreades.
DOI: 10.5061/dryad.vm447nm/2
title: Maror1_transcriptome_assembly

description: Version 1 transcriptome assembly of the fairy ring mushroom Marasmius oreades.
DOI: 10.5061/dryad.vm447nm/3
title: Maror1.all.maker

description: Version 1 genome annotation of the fairy ring mushroom Marasmius oreades.
DOI: 10.17632/hf3yr4zghb.1
title: Data for: Are Younger Children in Diabetic Ketoacidosis at Higher Risk of Cerebral Edema?

description: Supplementary table of the results of literature review
DOI: 10.17632/sg7bpj6z7c.1
title: Data for: Working together to improve the mental health of Indigenous children: A systematic review

description: Search strategy in Medline
DOI: 10.17632/tns7vtjjtv.3
title: Data for: Speed of Information Dissemination by Foreign Institutional Investors: Further Evidence

description: Foreign Institutional Investors (FII) data is provided by National Securities Depository Limited (NSDL) for the period 1st Jan, 2003 to 31st Dec, 2016. NSDL provides daily trade data of foreign portfolio investors in each of the stocks they trade. This information includes masked FII name, Broker name, Scrip name, Transaction date, Transaction Type, Price, and Quantity traded for every FII transaction.