cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive106434.20211221.6
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive106435.20211221.6
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive106436.20211221.6
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive106437.20211221.6
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.9861134.v2
title: Supplementary Tables .xlsx

description: Supplementary data to manuscript <b>Distal colonic transit is linked to gut microbiota diversity and microbial fermentation in humans with slow colonic transit</b>
DOI: 10.6084/m9.figshare.9860954
title: Hyman et al.PRSB death assemblages.csv from Long-term persistence of structured habitats: seagrass meadows as enduring hotspots of biodiversity and faunal stability

description: Ecological studies indicate that structurally complex habitats support elevated biodiversity, stability and resilience. The long-term persistence of structured habitats and their importance in maintaining biodiverse hotspots remain underexplored. We combined geohistorical data (dead molluscs, ‘DA’) and contemporary surveys (live molluscs, ‘LA’) to assess the persistence of local seagrass habitats over multi-centennial timescales and to evaluate whether they acted as long-term drivers of biodiversity, stability and resilience of associated fauna. We sampled structured seagrass meadows and open sandy bottoms along Florida's Gulf Coast. Results indicated that (i) LA composition differed significantly between the two habitat types, (ii) LA from seagrass sites were characterized by significantly elevated local biodiversity and significantly higher spatial stability, (iii) DA composition differed significantly between the two habitat types, and (iv) fidelity between LA and DA was significantly greater for seagrass habitats. Contemporary results support the hypotheses that local biodiversity and spatial stability of marine benthos are both elevated in structured seagrass habitats. Geohistorical results suggest that structured habitats persist as local hotspots of elevated biodiversity and faunal stability over centennial-to-millennial timescales; indicating that habitat degradation and concomitant loss within structurally complex marine systems is a key driver of declining biodiversity and resilience.
DOI: 10.6084/m9.figshare.9860954.v1
title: Hyman et al.PRSB death assemblages.csv from Long-term persistence of structured habitats: seagrass meadows as enduring hotspots of biodiversity and faunal stability

description: Ecological studies indicate that structurally complex habitats support elevated biodiversity, stability and resilience. The long-term persistence of structured habitats and their importance in maintaining biodiverse hotspots remain underexplored. We combined geohistorical data (dead molluscs, ‘DA’) and contemporary surveys (live molluscs, ‘LA’) to assess the persistence of local seagrass habitats over multi-centennial timescales and to evaluate whether they acted as long-term drivers of biodiversity, stability and resilience of associated fauna. We sampled structured seagrass meadows and open sandy bottoms along Florida's Gulf Coast. Results indicated that (i) LA composition differed significantly between the two habitat types, (ii) LA from seagrass sites were characterized by significantly elevated local biodiversity and significantly higher spatial stability, (iii) DA composition differed significantly between the two habitat types, and (iv) fidelity between LA and DA was significantly greater for seagrass habitats. Contemporary results support the hypotheses that local biodiversity and spatial stability of marine benthos are both elevated in structured seagrass habitats. Geohistorical results suggest that structured habitats persist as local hotspots of elevated biodiversity and faunal stability over centennial-to-millennial timescales; indicating that habitat degradation and concomitant loss within structurally complex marine systems is a key driver of declining biodiversity and resilience.
DOI: 10.6084/m9.figshare.9861134.v3
title: Supplementary Tables .xlsx

description: Supplementary data to manuscript <b>Distal colonic transit is linked to gut microbiota diversity and microbial fermentation in humans with slow colonic transit</b>
DOI: 10.6084/m9.figshare.9860951
title: Hyman et al.PRSB sample coordinates.csv from Long-term persistence of structured habitats: seagrass meadows as enduring hotspots of biodiversity and faunal stability

description: Ecological studies indicate that structurally complex habitats support elevated biodiversity, stability and resilience. The long-term persistence of structured habitats and their importance in maintaining biodiverse hotspots remain underexplored. We combined geohistorical data (dead molluscs, ‘DA’) and contemporary surveys (live molluscs, ‘LA’) to assess the persistence of local seagrass habitats over multi-centennial timescales and to evaluate whether they acted as long-term drivers of biodiversity, stability and resilience of associated fauna. We sampled structured seagrass meadows and open sandy bottoms along Florida's Gulf Coast. Results indicated that (i) LA composition differed significantly between the two habitat types, (ii) LA from seagrass sites were characterized by significantly elevated local biodiversity and significantly higher spatial stability, (iii) DA composition differed significantly between the two habitat types, and (iv) fidelity between LA and DA was significantly greater for seagrass habitats. Contemporary results support the hypotheses that local biodiversity and spatial stability of marine benthos are both elevated in structured seagrass habitats. Geohistorical results suggest that structured habitats persist as local hotspots of elevated biodiversity and faunal stability over centennial-to-millennial timescales; indicating that habitat degradation and concomitant loss within structurally complex marine systems is a key driver of declining biodiversity and resilience.
DOI: 10.6084/m9.figshare.9860945
title: Hyman et al.PRSB submersed aquatic vegetation.csv from Long-term persistence of structured habitats: seagrass meadows as enduring hotspots of biodiversity and faunal stability

description: Ecological studies indicate that structurally complex habitats support elevated biodiversity, stability and resilience. The long-term persistence of structured habitats and their importance in maintaining biodiverse hotspots remain underexplored. We combined geohistorical data (dead molluscs, ‘DA’) and contemporary surveys (live molluscs, ‘LA’) to assess the persistence of local seagrass habitats over multi-centennial timescales and to evaluate whether they acted as long-term drivers of biodiversity, stability and resilience of associated fauna. We sampled structured seagrass meadows and open sandy bottoms along Florida's Gulf Coast. Results indicated that (i) LA composition differed significantly between the two habitat types, (ii) LA from seagrass sites were characterized by significantly elevated local biodiversity and significantly higher spatial stability, (iii) DA composition differed significantly between the two habitat types, and (iv) fidelity between LA and DA was significantly greater for seagrass habitats. Contemporary results support the hypotheses that local biodiversity and spatial stability of marine benthos are both elevated in structured seagrass habitats. Geohistorical results suggest that structured habitats persist as local hotspots of elevated biodiversity and faunal stability over centennial-to-millennial timescales; indicating that habitat degradation and concomitant loss within structurally complex marine systems is a key driver of declining biodiversity and resilience.
DOI: 10.6084/m9.figshare.9860945.v1
title: Hyman et al.PRSB submersed aquatic vegetation.csv from Long-term persistence of structured habitats: seagrass meadows as enduring hotspots of biodiversity and faunal stability

description: Ecological studies indicate that structurally complex habitats support elevated biodiversity, stability and resilience. The long-term persistence of structured habitats and their importance in maintaining biodiverse hotspots remain underexplored. We combined geohistorical data (dead molluscs, ‘DA’) and contemporary surveys (live molluscs, ‘LA’) to assess the persistence of local seagrass habitats over multi-centennial timescales and to evaluate whether they acted as long-term drivers of biodiversity, stability and resilience of associated fauna. We sampled structured seagrass meadows and open sandy bottoms along Florida's Gulf Coast. Results indicated that (i) LA composition differed significantly between the two habitat types, (ii) LA from seagrass sites were characterized by significantly elevated local biodiversity and significantly higher spatial stability, (iii) DA composition differed significantly between the two habitat types, and (iv) fidelity between LA and DA was significantly greater for seagrass habitats. Contemporary results support the hypotheses that local biodiversity and spatial stability of marine benthos are both elevated in structured seagrass habitats. Geohistorical results suggest that structured habitats persist as local hotspots of elevated biodiversity and faunal stability over centennial-to-millennial timescales; indicating that habitat degradation and concomitant loss within structurally complex marine systems is a key driver of declining biodiversity and resilience.
DOI: 10.6084/m9.figshare.9860951.v1
title: Hyman et al.PRSB sample coordinates.csv from Long-term persistence of structured habitats: seagrass meadows as enduring hotspots of biodiversity and faunal stability

description: Ecological studies indicate that structurally complex habitats support elevated biodiversity, stability and resilience. The long-term persistence of structured habitats and their importance in maintaining biodiverse hotspots remain underexplored. We combined geohistorical data (dead molluscs, ‘DA’) and contemporary surveys (live molluscs, ‘LA’) to assess the persistence of local seagrass habitats over multi-centennial timescales and to evaluate whether they acted as long-term drivers of biodiversity, stability and resilience of associated fauna. We sampled structured seagrass meadows and open sandy bottoms along Florida's Gulf Coast. Results indicated that (i) LA composition differed significantly between the two habitat types, (ii) LA from seagrass sites were characterized by significantly elevated local biodiversity and significantly higher spatial stability, (iii) DA composition differed significantly between the two habitat types, and (iv) fidelity between LA and DA was significantly greater for seagrass habitats. Contemporary results support the hypotheses that local biodiversity and spatial stability of marine benthos are both elevated in structured seagrass habitats. Geohistorical results suggest that structured habitats persist as local hotspots of elevated biodiversity and faunal stability over centennial-to-millennial timescales; indicating that habitat degradation and concomitant loss within structurally complex marine systems is a key driver of declining biodiversity and resilience.
DOI: 10.6084/m9.figshare.9861134.v4
title: Supplementary Tables .xlsx

description: Supplementary data to manuscript <b>Distal colonic transit is linked to gut microbiota diversity and microbial fermentation in humans with slow colonic transit</b>
DOI: 10.6084/m9.figshare.9860939
title: Hyman et al.PRSB mollusk species list.csv from Long-term persistence of structured habitats: seagrass meadows as enduring hotspots of biodiversity and faunal stability

description: Ecological studies indicate that structurally complex habitats support elevated biodiversity, stability and resilience. The long-term persistence of structured habitats and their importance in maintaining biodiverse hotspots remain underexplored. We combined geohistorical data (dead molluscs, ‘DA’) and contemporary surveys (live molluscs, ‘LA’) to assess the persistence of local seagrass habitats over multi-centennial timescales and to evaluate whether they acted as long-term drivers of biodiversity, stability and resilience of associated fauna. We sampled structured seagrass meadows and open sandy bottoms along Florida's Gulf Coast. Results indicated that (i) LA composition differed significantly between the two habitat types, (ii) LA from seagrass sites were characterized by significantly elevated local biodiversity and significantly higher spatial stability, (iii) DA composition differed significantly between the two habitat types, and (iv) fidelity between LA and DA was significantly greater for seagrass habitats. Contemporary results support the hypotheses that local biodiversity and spatial stability of marine benthos are both elevated in structured seagrass habitats. Geohistorical results suggest that structured habitats persist as local hotspots of elevated biodiversity and faunal stability over centennial-to-millennial timescales; indicating that habitat degradation and concomitant loss within structurally complex marine systems is a key driver of declining biodiversity and resilience.
DOI: 10.6084/m9.figshare.9860942
title: Hyman et al.PRSB life assemblages.csv from Long-term persistence of structured habitats: seagrass meadows as enduring hotspots of biodiversity and faunal stability

description: Ecological studies indicate that structurally complex habitats support elevated biodiversity, stability and resilience. The long-term persistence of structured habitats and their importance in maintaining biodiverse hotspots remain underexplored. We combined geohistorical data (dead molluscs, ‘DA’) and contemporary surveys (live molluscs, ‘LA’) to assess the persistence of local seagrass habitats over multi-centennial timescales and to evaluate whether they acted as long-term drivers of biodiversity, stability and resilience of associated fauna. We sampled structured seagrass meadows and open sandy bottoms along Florida's Gulf Coast. Results indicated that (i) LA composition differed significantly between the two habitat types, (ii) LA from seagrass sites were characterized by significantly elevated local biodiversity and significantly higher spatial stability, (iii) DA composition differed significantly between the two habitat types, and (iv) fidelity between LA and DA was significantly greater for seagrass habitats. Contemporary results support the hypotheses that local biodiversity and spatial stability of marine benthos are both elevated in structured seagrass habitats. Geohistorical results suggest that structured habitats persist as local hotspots of elevated biodiversity and faunal stability over centennial-to-millennial timescales; indicating that habitat degradation and concomitant loss within structurally complex marine systems is a key driver of declining biodiversity and resilience.
DOI: 10.6084/m9.figshare.9860939.v1
title: Hyman et al.PRSB mollusk species list.csv from Long-term persistence of structured habitats: seagrass meadows as enduring hotspots of biodiversity and faunal stability

description: Ecological studies indicate that structurally complex habitats support elevated biodiversity, stability and resilience. The long-term persistence of structured habitats and their importance in maintaining biodiverse hotspots remain underexplored. We combined geohistorical data (dead molluscs, ‘DA’) and contemporary surveys (live molluscs, ‘LA’) to assess the persistence of local seagrass habitats over multi-centennial timescales and to evaluate whether they acted as long-term drivers of biodiversity, stability and resilience of associated fauna. We sampled structured seagrass meadows and open sandy bottoms along Florida's Gulf Coast. Results indicated that (i) LA composition differed significantly between the two habitat types, (ii) LA from seagrass sites were characterized by significantly elevated local biodiversity and significantly higher spatial stability, (iii) DA composition differed significantly between the two habitat types, and (iv) fidelity between LA and DA was significantly greater for seagrass habitats. Contemporary results support the hypotheses that local biodiversity and spatial stability of marine benthos are both elevated in structured seagrass habitats. Geohistorical results suggest that structured habitats persist as local hotspots of elevated biodiversity and faunal stability over centennial-to-millennial timescales; indicating that habitat degradation and concomitant loss within structurally complex marine systems is a key driver of declining biodiversity and resilience.
DOI: 10.6084/m9.figshare.9860942.v1
title: Hyman et al.PRSB life assemblages.csv from Long-term persistence of structured habitats: seagrass meadows as enduring hotspots of biodiversity and faunal stability

description: Ecological studies indicate that structurally complex habitats support elevated biodiversity, stability and resilience. The long-term persistence of structured habitats and their importance in maintaining biodiverse hotspots remain underexplored. We combined geohistorical data (dead molluscs, ‘DA’) and contemporary surveys (live molluscs, ‘LA’) to assess the persistence of local seagrass habitats over multi-centennial timescales and to evaluate whether they acted as long-term drivers of biodiversity, stability and resilience of associated fauna. We sampled structured seagrass meadows and open sandy bottoms along Florida's Gulf Coast. Results indicated that (i) LA composition differed significantly between the two habitat types, (ii) LA from seagrass sites were characterized by significantly elevated local biodiversity and significantly higher spatial stability, (iii) DA composition differed significantly between the two habitat types, and (iv) fidelity between LA and DA was significantly greater for seagrass habitats. Contemporary results support the hypotheses that local biodiversity and spatial stability of marine benthos are both elevated in structured seagrass habitats. Geohistorical results suggest that structured habitats persist as local hotspots of elevated biodiversity and faunal stability over centennial-to-millennial timescales; indicating that habitat degradation and concomitant loss within structurally complex marine systems is a key driver of declining biodiversity and resilience.
DOI: 10.6084/m9.figshare.9861134.v6
title: Supplementary Tables .xlsx

description: Supplementary data to manuscript <b>Distal colonic transit is linked to gut microbiota diversity and microbial fermentation in humans with slow colonic transit</b>
DOI: 10.6084/m9.figshare.9861134.v5
title: Supplementary Tables .xlsx

description: Supplementary data to manuscript <b>Distal colonic transit is linked to gut microbiota diversity and microbial fermentation in humans with slow colonic transit</b>
DOI: 10.6084/m9.figshare.9860909
title: Mitochondrial dysfunction generates a growth-restraining signal linked to pyruvate in <i>Drosophila</i> larvae

description: The <i>Drosophila</i> bang-sensitive mutant <i>tko<sup>25t</sup></i>, manifesting a global deficiency in oxidative phosphorylation due to a mitochondrial protein synthesis defect, exhibits a pronounced delay in larval development. We previously identified a number of metabolic abnormalities in <i>tko<sup>25t</sup></i> larvae, including elevated pyruvate and lactate, and found the larval gut to be a crucial tissue for the regulation of larval growth in the mutant. Here we established that expression of wild-type <i>tko</i> in any of several other tissues of <i>tko<sup>25t</sup></i> also partially alleviates developmental delay. The effects appeared to be additive, whilst knockdown of <i>tko</i> in a variety of specific tissues phenocopied <i>tko<sup>25t</sup></i>, producing developmental delay and bang-sensitivity. These findings imply the existence of a systemic signal regulating growth in response to mitochondrial dysfunction. Drugs and RNAi-targeted on pyruvate metabolism interacted with <i>tko<sup>25t</sup></i> in ways that implicated pyruvate or one of its metabolic derivatives in playing a central role in generating such a signal. RNA-seq revealed that dietary pyruvate-induced changes in transcript representation were mostly non-coherent with those produced by <i>tko<sup>25t</sup></i> or high-sugar, consistent with the idea that growth regulation operates primarily at the translational and/or metabolic level.
DOI: 10.6084/m9.figshare.9860924
title: Supp_tables_S1_S3_S7_S8.xlsx from Highly heritable and functionally relevant breed differences in dog behaviour

description: Supplemental tables S1 S3 S8 and S8
DOI: 10.6084/m9.figshare.9860828
title: Effect of spectral composition on growth, oxidative stress responses, and apoptosis-related gene expression of the shrimp, Litopenaeus vannamei

description: Raw data for mapping
DOI: 10.6084/m9.figshare.9860909.v1
title: Mitochondrial dysfunction generates a growth-restraining signal linked to pyruvate in <i>Drosophila</i> larvae

description: The <i>Drosophila</i> bang-sensitive mutant <i>tko<sup>25t</sup></i>, manifesting a global deficiency in oxidative phosphorylation due to a mitochondrial protein synthesis defect, exhibits a pronounced delay in larval development. We previously identified a number of metabolic abnormalities in <i>tko<sup>25t</sup></i> larvae, including elevated pyruvate and lactate, and found the larval gut to be a crucial tissue for the regulation of larval growth in the mutant. Here we established that expression of wild-type <i>tko</i> in any of several other tissues of <i>tko<sup>25t</sup></i> also partially alleviates developmental delay. The effects appeared to be additive, whilst knockdown of <i>tko</i> in a variety of specific tissues phenocopied <i>tko<sup>25t</sup></i>, producing developmental delay and bang-sensitivity. These findings imply the existence of a systemic signal regulating growth in response to mitochondrial dysfunction. Drugs and RNAi-targeted on pyruvate metabolism interacted with <i>tko<sup>25t</sup></i> in ways that implicated pyruvate or one of its metabolic derivatives in playing a central role in generating such a signal. RNA-seq revealed that dietary pyruvate-induced changes in transcript representation were mostly non-coherent with those produced by <i>tko<sup>25t</sup></i> or high-sugar, consistent with the idea that growth regulation operates primarily at the translational and/or metabolic level.
DOI: 10.25392/leicester.data.9860807
title: Data for Kidney Failure Risk Equation, Major et al PLOS Medicine 2019

description: Data used to perform analysis for manuscript "The Kidney Failure Risk Equation for prediction of end stage renal disease in UK primary care: an external validation and clinical impact projection cohort study" (Major et al, PLOS Medicine 2019)