cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29109347.v1
title: Gut Microbiota and Brain-Resident CD4 T Cells Shape Behavioral Outcomes in Autism Spectrum Disorder

description: Autism spectrum disorder (ASD) is a neurodevelopmental disorder characterized by abnormal social interactions, repetitive behaviors, and anxiety-like symptoms. While emerging evidence suggest a gut-brain axis in the etiology of ASD, the underlying mechanisms remain unclear. To dissect this axis, we developed a germ-free (GF) BTBR mouse model for ASD. Remarkably, the absence of gut microbiota prevented ASD-associated behaviors, concurrent with a reduced population and inflammatory phenotype of brain-resident T cells. CD4 T cell depletion in BTBR mice mitigated ASD behaviors and neuroinflammation. We identified several microbes and metabolites, particularly those relevant to the glutamate/GABA ratio and 3-hydroxyglutaric acid, as critical drivers of ASD. Using an in silico metabolite prediction model, we identified Limosilactobacillus reuteri IMB015 (IMB015) as a probiotic candidate. Administration of IMB015 reduced the glutamate/GABA ratio and neuroinflammation, resulting in improved behaviors. These findings suggest a gut-immune-brain axis in which the gut microbiota and its metabolites can modulate brain-resident immune cells and ASD-associated behaviors.
DOI: 10.6084/m9.figshare.7392188.v1
title: Tracheal volumes TLR

description: Tracheal volumes of Cacosceles newmannii adults and larvae
DOI: 10.17632/xvn9ngmc46
title: Online Purchase Intention of Plant-Based Foods

description: Understanding Online Purchase Intention of Plant-Based Foods: Exploring Causal Factors and Moderating Role of Self-Efficacy within the S-O-R Theory
DOI: 10.6084/m9.figshare.17057063.v1
title: Data supporting "Cooling Low-Dimensional Electron Systems into the Microkelvin Regime" article

description: This dataset combines all the supporting data under single DOI. The individual files contain:<b><br></b><b>Te_vs_dotQe.dat</b> - modelled electron temperature as a function of heat leak to the electrons.<b><br></b><b>Rsquare_vs_T.dat</b> - temperature dependence of the 2DEG sheet resistance before and after illumination..<br><b>R_NT-Iminus_vs_T.dat</b> - temperature dependence of the resistance between NT and I- ohmic contacts before and after illumination.<br><b>dQnt_dTnt.dat</b> - thermal conductance between 2DEG NT and 3He bath before and after illumination.<br><b>dQnt_dTnt.dat</b> - non-local thermal conductance, describing the response of 2DEG NT to heating the 2DEG before and after illumination.<br><b>dotQe_vs_t.dat </b>- time dependence of the heat leak to the 2DEG before and after illumination.<br><b>NT_tau.dat</b> - temperature dependence of the 2DEG NT thermalisation time constant, with the NT both connected to the 2DEG and running on its own.<br>
DOI: 10.17632/dn4p6zwfcb
title: Traffic survey sample

description: Sample Data set using floating car method
DOI: 10.17632/dxc5yxysnm
title: Data Set for Simultaneous in vivo multi-organ fluxomics reveals divergent metabolic adaptations in liver, heart, and skeletal muscle during obesity

description: Contains the following raw data for Simultaneous in vivo multi-organ fluxomics reveals divergent metabolic adaptations in liver, heart, and skeletal muscle during obesity 
Mass isotopomer distributions [MIDs]
Absolute Uptake Rates
Metabolite Concentrations
mRNA fold change
DOI: 10.17632/ft7w5xmbbv
title: Development and Validation of Time-to-Event Models to Predict Metastatic Recurrence of Localized Cutaneous Melanoma

description: Supplemental methods, figures, and tables
DOI: 10.17632/pbbx6gckck
title: Clonality and timing of relapsing colorectal cancer metastasis revealed through whole-genome single-cell sequencing

description: Single-cell somatic substitution and CNV calls to accompany the article "Clonality and timing of relapsing colorectal cancer metastasis revealed through whole-genome single-cell sequencing" published in Cancer Letters. This research article has the following authors and affiliations:

Joao M. Alves[a,b], Sonia Prado-López[a,b,1], Laura Tomás[a,b], Monica Valecha[a,b], Nuria Estévez-Gómez[a,b], Pilar Alvariño[a,b], Dominik Geissel[c], Dominik Paul Modest[d], Igor M. Sauer[e], Johann Pratschke[e], Nathanael Raschzok[e,f], Christine Sers[g,h], Soulafa Mamlouk[g,h*], David Posada[a,b,i*]


aCINBIO, Universidade de Vigo, 36310 Vigo, Spain
bGalicia Sur Health Research Institute (IIS Galicia Sur), SERGAS-UVIGO
cDepartment of Radiology, Campus Virchow-Klinikum, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Germany
dDepartment of Hematology, Oncology, and Cancer Immunology, Campus Charité Mitte | Campus Virchow-Klinikum, Charité – Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany
eDepartment of Surgery, Campus Charité Mitte | Campus Virchow-Klinikum, Berlin, Charité – Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Germany
fBerlin Institute of Health at Charité – Universitätsmedizin Berlin, BIH Academy, Clinician Scientist Program, Berlin, Germany
gCharité – Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Pathology, Charitéplatz 1, 10117 Berlin, Germany
hGerman Cancer Consortium (DKTK); Partner Site Berlin, German Cancer Research Center (DKFZ), Heidelberg, Germany
iDepartment of Biochemistry, Genetics, and Immunology, Universidade de Vigo, 36310 Vigo, Spain

1Present address: Technische Universität Wien, Austria

*S.M. and D.P. share senior authorship
DOI: 10.6084/m9.figshare.28200554.v1
title: Single copy orthologous genes from UCYN-A1 and UCYN-A2 strains

description: All target SCOG sequences among the seven UCYN-A genomes.
DOI: 10.17632/y8jg4hpt49
title: Data Set: Planning and scheduling in long-term care homes under pandemic conditions: The case of COVID-19

description: This repository includes two sets of theoretical and realistic instances used in "Planning and scheduling in long-term care homes under pandemic conditions: The case of COVID-19." To be more precise, this repository provides 660 theoretical instances and 50 realistic instances. This data set can be used for future comparisons of the optimization algorithms developed for long-term care planning and scheduling problems.

Problem definition: https://doi.org/10.1016/j.omega.2022.102671
DOI: 10.6084/m9.figshare.24167544.v1
title: Biochar from sewage sludge: effect of pyrolysis on functional properties and pollutants fate - Environmental Quality Management.txt

description: Raw data of the paper "Biochar from sewage sludge: effect of pyrolysis on functional properties and pollutants fate".
DOI: 10.6084/m9.figshare.903704.v5
title: InSciOut

description: Data and materials associated with: Sumner P., Vivian-Griffiths, S., Boivin J., Williams A., Venetis, CA., Davies A., Ogden J, Whelan L., Hughes B., Dalton B., Boy F., & Chambers C.D. The association between exaggeration in health related science news and academic press releases: retrospective observational study.
DOI: 10.17632/2wckhrzz5j
title: Dataset of Causes of delays in construction projects 

description: This data file includes a raw dataset from research on Causes of delays in construction projects in the Province of Aceh, Indonesia. This data is the result of the distribution of primary data to respondents.
DOI: 10.17632/7cpc28mkcy
title: climate-smart agricultural practices, productivity and food nutrition security

description: A cross-sectional data collected from 316 smallholder farmers in SOuth Africa
DOI: 10.17632/86tg7hwrrw
title: Data for: 6th Vital Sign App: Testing Validity and Reliability

description: Validity data for a 2 minute normal walk speed test
DOI: 10.17632/j59fk33knw
title: ENGINEERING THE TRADE-OFF: A BIDIRECTIONAL ANALYSIS OF PRICING AND FINANCIAL SUSTAINABILITY IN MICROFINANCE INSTITUTIONS

description: The research dataset comprises both raw and processed data files designed to facilitate and expedite the review process while ensuring ease of data reuse, interpretation, and replication.
DOI: 10.17632/n8zgrxpj2s
title: Mutual Fund Performance

description: The dataset accompanying the research article titled "Assessing Mutual Fund Performance from the Perspective of Public Assets under Management" provides comprehensive information on the performance dynamics of mutual funds in Nepal over a 48-month period from January 2018 to January 2022. The dataset comprises six key variables for five selected mutual funds: Assets under Management (AUM), Expense Ratio, Age, Liquidity, Net Asset Value (NAV), and Return. AUM reflects the total market value of assets managed by each fund, while the Expense Ratio measures the proportion of assets used to cover operating expenses. Age denotes the duration since the inception of each fund, providing insights into its market experience. Liquidity assesses the ease of converting fund assets into cash, while NAV represents the per-share value of assets after deducting liabilities. Return reflects the percentage change in fund value over the study period. Researchers can utilize this dataset to replicate the analysis presented in the research article, conduct further analyses, or explore other research questions related to mutual fund performance and investment dynamics in Nepal. Proper citation of the original research article is encouraged when using the dataset for academic or research purposes, ensuring adherence to ethical and confidentiality standards.
DOI: 10.17632/r3zdc53gtg
title: Full-wave calculation of ionospheric wave attenuation at Mars, as used in the manuscript "Lightning-generated waves detected at Mars"

description: The file "mars_ions_public.py" is a Python code to calculate the wave attenuation in the ionosphere, with parameters set to correspond to the case analyzed in the paper "Lightning-generated waves detected at Mars", replicating Figure 4b therein.

It uses the model magnetic field profile stored in "mag_profile.txt" and, on top of traditional Python libraries, the in-house routines from the file "ionospheric_attenuation_public.py".

The calculation follows the established full-wave modeling method developed by Lehtinen and Inan (2008, 2009).

References:

N. G. Lehtinen, U. S. Inan, Radiation of ELF/VLF waves by harmonically varying currents into a stratified ionosphere with application to radaition by a modulated electrojet, J. Geophys. Res., 113, A06301, doi: 10.1029/2007JA012911, 2008.

N. G. Lehtinen, U. S. Inan, Full-wave modeling of transionospheric propagation of VLF waves, Geophys. Res. Lett., 36, L03104, doi: 10.1029/2008GL036535, 2009.
DOI: 10.17632/dry3g9ffbt
title: SVC2004_Task1

description: SVC 2004: First International Signature Verification Competition
DOI: 10.17632/k2jhvmkmy6
title: Young KREEP-like mare volcanism from Oceanus Procellarum

description: Table S1. Major and trace element concentrations of scooped soil, drilled soil, agglutinate, breccia, and basalt clasts from CE-5 lunar soil.
Table S2. Hafnium isotopic composition of the Chang'e-5 soil and basalt.
Table S3. Major and trace elements compositions of clinopyroxene in CE-5 basalt 
Table S4. Compiled data of mineral proportion and element concentrations of KREEP basalts (15386, 72275, SaU 169) and other typical lunar meteorites.
Table S4 Additions. Major and trace element compositions of La Paz mare basalt meteorites.
Table S5. The modelling details of hybrid mantle source for Chang'e-5 basalts.
Table S6.The examples of calculated chemical compositions of the sources, primary melts and evolved melts in the model of Table S5.
DOI: 10.17632/nzwc83h278
title: The PCR primer pairs and sequence data of the psbK-psbI, trnE-trnT, ycf1, and matK regions from Strobilanthes bantonensis Lindau

description: This dataset includes the PCR primer pairs and psbK-psbI, trnE-trnT, ycf1, matK regions from Strobilanthes bantonensis Lindau collected in Cao Bang province, Vietnam. The trnE-trnT, psbK-psbI, ycf1 sequences (hypervariable regions with nucleotide diversity (Pi) values greater than 0.02), and the matK barcode were downloaded from the chloroplast genome of Strobilanthes bantonensis (GenBank: MT576695.1) as the basis for designing PCR primer pairs to amplify the trnE-trnT, psbK-psbI, ycf1, and matK regions. The designed PCR primer pairs have the characteristics shown in Table 1. The trnE-trnT space region sequence is 692 bp in length; the psbK-psbI space region sequence is 385 bp in length; the ycf1 gene region is 786 bp in length; the matK gene region is 962 bp in length.
DOI: 10.6084/m9.figshare.1579607.v1
title: Genome-wide analysis of microsatellite markers based on the sequenced database of Chinese spring wheat (Triticum aestivum L.)

description: Microsatellites or simple sequence repeats (SSRs) are distributed across both prokaryotic and eukaryotic genomes and have been widely used for genetic studies and molecular marker assisted breeding of crops. Although a draft sequence for hexaploid bread wheat is available, to date, there is no published systemic analysis of SSRs in wheat. In the present study, we identified 364,347 SSRs from among 10,603,760 sequences of the Chinese spring wheat (CSW) genome, which were present at a density of 36.68 SSR/Mb. In total, we detected 488 types of motifs ranging from di- to hexanucleotides, among which dinucleotide repeats dominated, accounting for approximately 42.52% of the genome. The density of tri- to hexanucleotide repeats was 24.97%, 4.62%, 3.25% and 24.65%, respectively. AG/CT, AAG/CTT, AGAT/ATCT, AAAAG/CTTTT and AAAATT/AATTTT were the most frequent repeats among di- to hexanucleotide repeats. Among the 21 chromosomes of CSW, the density of repeats was highest on chromosome 2D and lowest on chromosome 3A. The proportions of di-, tri-, tetra-, penta- and hexanucleotide repeats on each chromosome, and even on the whole genome, were almost identical. In addition, 295,267 SSR markers were successfully developed from the 21 chromosomes of CSW, which cover the entire genome at a density of 29.73 per Mb. All of the SSR markers were validated by reverse electronic-Polymerase Chain Reaction (re-PCR); 70,564 (23.9%) were found to be monomorphic and 224,703 (76.1%) were found to be polymorphic. A total of 45 monomorphic markers were selected randomly for validation purposes; 24 (53.3%) amplified one locus, 8 (17.8%) amplified multiple identical loci, and 13 (28.9%) did not amplify any fragments from the genomic DNA of CSW. Then a dendrogram was generated based on the 24 monomorphic SSR markers among 20 wheat cultivars and three species of its diploid ancestors showing that monomorphic SSR markers represented a promising source to increase the number of genetic markers available for the wheat genome. The results of this study will be useful for investigating the genetic diversity and evolution of wheat and related species. At the same time, the results will facilitate comparative genomic studies and marker-assisted breeding (MAS) in plants.
DOI: 10.6084/m9.figshare.3984480.v1
title: Dynamic microRNAome profiles in the developing porcine liver

description: Increasing evidence suggests that micro (mi)RNAs play important roles in various biological process. To evaluate the roles of miRNA in the porcine liver, we investigated the dynamic profiles of microRNAomes using liver tissue from pigs during the embryonic period (embryonic day 90), weaning stage (postnatal day 30), and adult stage (7 years old). A total of 186 unique miRNAs were differentially expressed during liver development. We also identified that 17, 13, and 6 miRNAs were specifically abundant at embryonic day 90, postnatal day 30, and at 7 years, respectively. Besides regulating basic cellular roles in development, miRNAs expressed at the three developmental stages also participated in regulating “embryonic liver development,” “early hepatic growth and generating a functioning liver,” and “energy metabolic processes,” respectively. Our study indicates that miRNAs are extensively involved in liver development, and provides a valuable resource for the further elucidation of miRNA regulatory roles during liver development. miRNAs are extensively involved in liver development, especially for these stage-enriched miRNAs.
DOI: 10.6084/m9.figshare.6087023.v1
title: Genome_Abundances

description: log10 TPM genome abundances as determined through read-mapping of metagenomes, in tab-delimited format. <br>
DOI: 10.17632/8hrx63cpns
title: Aquatic Acute Toxicity Data for Water Quality Criteria Development

description: Acute toxicity data from marine and freshwater aquatic species compiled from the US EPA's ECOTOXicology knowledgebase with additional data from marine species gathered from Web of Science and Google Scholar searches. Data are limited to twelve chemicals.
DOI: 10.17632/w7549ryvx2
title: Post-earthquake concrete crack dataset (PECCD)

description: This dataset involves a post-earthquake multi-feature annotated concrete defect image dataset. The dataset called “post-earthquake concrete crack dataset (PECCD)” is collected from damaged buildings in the Syrian Coast region after the Turkey-Syria earthquake 2023. The considered defect types are: deep crack, simple crack, multi-branched crack, spalling, scaling, and holes.
DOI: 10.5281/zenodo.8321865
title: Replication Package for "The Double-edged Sword of Banning Generative AI on Online Question-and-Answer Communities: Evidence from Stack Exchange"

description: This is a replication package for "The Double-edged Sword of Banning Generative AI on Online Question-and-Answer Communities: Evidence from Stack Exchange".
DOI: 10.5281/zenodo.8321866
title: Replication Package for "The Double-edged Sword of Banning Generative AI on Online Question-and-Answer Communities: Evidence from Stack Exchange"

description: This is a replication package for "The Double-edged Sword of Banning Generative AI on Online Question-and-Answer Communities: Evidence from Stack Exchange".
DOI: 10.6084/m9.figshare.14813094.v1
title: Dataset 1

description: Dataset 1 Data of KL and KW of AM RILs in six environments
DOI: 10.17632/rvkb5mtf6h
title: Host CDK1-formin signal confers microvillar effacement by an attaching and effacing (A/E) pathogen

description: Raw Western Blot data
DOI: 10.6084/m9.figshare.19673562.v1
title: Amino-acid sequences of MAKER-annotated protein-coding genes

description: Amino-acid sequences of MAKER-annotated protein-coding genes
DOI: 10.6084/m9.figshare.1281097.v1
title: Quizoola24 Twitter Chorus

description: Textual presentation of all tweets. Source data from: https://doi.org/10.6084/m9.figshare.1281094 Live version in link below.
DOI: 10.17632/xykvwd3twg
title: Spatiotemporal variations of soil reactive nitrogen oxide fluxes across the anthropogenic landscape

description: Dataset contains 132 samples. Soil was sampled seasonally over one year, in November 2021, February 2022, May 2022, and August 2022. Soil was sampled from three locations, University of Warwick Wellesbourne Campus, Warwick Town, and Coventry City, corresponding to low (&lt;1000), mid (~35,000-52,000), and high (&gt;400,000) human population. Within these locations, samples were taken from four land-use types: agricultural, woodland, grass-dominated, and built. Here, we define ‘built’ soil as that found within one metre of human made structure such as buildings and car parks.There were three replicates of each land-use type and each location. Measured variables are potential NOy, NO and NOy - NO fluxes from intact 0-10cm soil cores, soil physicochemical properties, 16S rRNA amplicon sequencing, quantitative PCR of nitrification genes, net rates of nitrogen cycle processes, and concentrations of heavy metals measured with ICP-OES.
DOI: 10.6084/m9.figshare.24793929.v2
title: Supplementary table 1. List of selected SNP included in the MR analyses.

description: List of the variants selected to perform the mendelian randomization analyses.<b>SE </b>Standard Error. <b>MVPA</b> Moderate to vigorous physical activity; <b>OaD</b> Overall activity (identified by Doherty et al (35)); <b>OaK</b> Overall activity (identified by Klimentidis et al(32)); <b>VpaK</b> Vigorous physical activity; <b>SbD</b> Sedentary behaviour (identified by Doherty et al(35)); <b>Srcu</b> Self-reported computer use; <b>Srdt</b> Self-reported driving time; <b>SrSbw</b> Self-reported Sedentary behaviour at work (identified by Wang et al(34)); <b>SrTVu</b> Self-reported TV use.
DOI: 10.17632/djnyd6wh7m
title: OPERA pulses and NMR data, Coote et al

description: Supporting data for "Optimization of phase dispersion enables broadband excitation without homonuclear coupling artifacts" by Coote et al. Manuscript citation: Paul Coote, Wolfgang Bermel, Haribabu Arthanari, Optimization of phase dispersion enables broadband excitation without homonuclear coupling artifacts, Journal of Magnetic Resonance, 2021, 106928, ISSN 1090-7807 Manuscript DOI: https://doi.org/10.1016/j.jmr.2021.106928
DOI: 10.17632/n7dyj5pjmm
title: Chinese natural gas phase-out pathways: A novel hybrid scenario-specific projection approach to achieve Net Zero

description: Data and Python code.
DOI: 10.6084/m9.figshare.26123965.v1
title: 不确定环境下考虑服务占用的云制造多任务调度建模及求解算法研究

description: 这是论文 "不确定环境下考虑服务占用的云制造多任务调度建模及求解算法研究"的实验数据。
DOI: 10.17632/gf7zb4dwfd
title: Data availability

description: These data contain coal consumption in the industrial sector in Jakarta. These data were obtained from BPS-Statistics DKI Jakarta Province, and BPS-Statistics of Indonesia.
DOI: 10.6084/m9.figshare.5248459.v2
title: SAR11 TARA Metapangenome

description: SAR11 metapangenome.Run `anvi-display-pan` in an anvi'o conda environment to visualize these data.For installation instructions of anvi'o, please visit https://anvio.org/install
DOI: 10.17632/7ps3ghwzkk
title: Comparison of problem-solving skills in the traditional face-to-face classroom and online learning data of postgraduate courses in education management

description: The data set of the independent variables were traditional face-to-face classroom settings and online learning formats. The dependent variables were problem-solving skills, including self-confidence and critical and creative problem-solving. In total, 127 graduate students in the programme of education management participated in the dataset.
DOI: 10.17632/gzprcr93zn
title: Multi-IsnadSet (MIDS) for Sahih Muslim Hadith with chain of Narrators, based on multiple ISNAD

description: The Hadith Isnad narrators data may be useful for the researcher to better adapt these techniques for particular problems. This data is developed for future research on the public repository for all the Research Institutes, Scientific and Islamic communities who want to work on Hadith's domain. This dataset contains two types of excel documents: Hadith_SahihMuslim_CoreInfo.xlsx file (7748 records) and Hadith_SahihMuslim_DetailsInfo_Sanad_Narrators.xlsx document (77797 records). The data contains 7748 Hadiths and 2092 unique records of Narrators of All Sahih Muslim Hadith
DOI: 10.6084/m9.figshare.14406596.v4
title: Dataset factors predicting hospital readmission

description: Datasets for the study of factors predicting hospital readmission among Thais with post myocardial infarction<br>
DOI: 10.17632/2f6hp6s8zk
title: Data for: Indigenous Unrest and the Contentious Politics of Social Assistance in Mexico

description: Lapop
DOI: 10.17632/x2w9ftkpfw
title: Dietary supplements popularity – rankings of Goole searches

description: This study concerns interest in dietary supplements-related searches among Google users. The authors analyzed n = 200 topics related to dietary supplements ingredients. The highest popularity among ingredients had: "Magnesium", "Protein", and "Iron". The interest in dietary supplements varied across the countries. Users from English-speaking countries were the most interested in "Protein", while users from Europe and Central Asia in "Magnesium". Overall, the interest in dietary supplements increases in the years 2004-2019 and was the highest during February and March, while was the lowest during December.