cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8g1bb/10
title: Dryad10_syllable_jaccard_SIMILARITY_index

description: Matrix of Jaccard similarity based on syllable sharing, calculated for all pairwise combinations of 32 male song sparrows. A = syllables produced by individual A but not B; B = syllables produced by individual B but not A; C = syllables common to both individuals; D = difference in repertoire size (number of syllables) between individuals A and B.
DOI: 10.5061/dryad.8g1bb/11
title: Dryad11_syllable_Jaccard_Dissimilarity

description: Pairwise matrix of Jaccard DISSIMILARITY, calculated as 1-Jaccard similarity, for all pairwise combinations of 32 male song sparrows.
DOI: 10.5061/dryad.8g1bb/12
title: Dryad12_MHC_SAs_and_Song_Data

description: Number of MHC superalleles (SA) and song repertoire size (Song) for each of 32 male song sparrows.
DOI: 10.5061/dryad.8g1bb/13
title: Dryad13_Suppl_ analysis

description: Tables S1 and S2. Predictors of song sparrow song repertoire size, after excluding a potentially influential datapoint.
DOI: 10.5061/dryad.8g1bb/8
title: Dryad8_song_unifrac_matrix

description: Matrix of UniFrac distances calculated for all pairwise combinations of 32 male song sparrows genotyped at MHC IIß.
DOI: 10.5061/dryad.8g1bb/9
title: Dryad9_MHC_UniFrac_Matrix

description: Matrix of UniFrac distances calculated for all pairwise combinations of 32 male song sparrows genotyped at MHC IIß. This file is identical to file Dryad8 except that it includes individual identity along the top row.
DOI: 10.5061/dryad.9g263/1
title: Data

description: Variables used during the analyses of the importance of partial seed consumption as a rescue for the Araucaria population subject to human seed collection. More information in the data sheet
DOI: 10.5061/dryad.c45cd/1
title: Interactiondata_all_Brazil

description: Edgelist data file with interactions from all seven Brazilian sites.
DOI: 10.5061/dryad.c45cd/2
title: QuanMat_loc_Western Sahara-2016-12-14

description: Interaction matrix for Western Sahara site.
DOI: 10.5061/dryad.c561m/1
title: NestConstructionData

description: Data on blue tit nest size and proportion of feathers in nests 2008-2017 in SW Finland
DOI: 10.5061/dryad.c561m/2
title: NestConstructionPed

description: Pedigree of blue tits with IDs encountered in NestConstructionData. To be used for quantitative genetic analyses
DOI: 10.5061/dryad.c6035/1
title: SIDER stable isotope data

description: The data comprise 409 observations of ∆15N and ∆13C TDFs derived from controlled feeding trials on 26 bird and 27 mammal species. Explanatory variables that can be included in creating the predictive model are detailed in Table 1. Species taxonomic names follow those used in the Bininda-Emonds et al. (2007) and Jetz et al. (2012) phylogenies. Habitat was defined as either marine or terrestrial based on typical foraging habitat. Sampling tissues were reduced into categories that reflect the metabolic pathway and expected turnover of the tissue. For example, fur and whiskers were all defined under the heading of hair. Diet type is defined as either herbivore, carnivore, omnivore and pellet diets.
DOI: 10.5061/dryad.fd3kj/1
title: Comparative demographics of rainbow skinks

description: This is a compressed zip file of all the datasets and scripts used in this study grouped by analysis or dataset.
DOI: 10.5061/dryad.ff94h/1
title: Data_repository_file

description: The study is comprised of a number of discrete components, each addressing specific hypotheses, as outlined in Table 1 of the associated Oikos manuscript. This data file is comprised of four data sheets. Data sheet 1 (Sex ratio-Field) contains percentage data for male and female Lovenula raynerae over the hydroperiod (Table 1- Field study). Data sheet 2 (Sex ratio-Lab) contains raw count data for male and female Lovenula raynerae, from a controlled laboratory experiment, over time (Table 1- Experiment 1). Data sheet 3 (Predation success experiment) contains raw count data from an experiment assessing predation success between the predator (Enithares sobria) and prey (Lovenula raynerae) (Table 1- Experiment 2). Data sheet 4 (Escape-Attack speed) contains maximum swimming speed data (expressed in mm per second) for Lovenula raynerae (prey) during escape events and for Enithares sobria (predator) during attack events (Table 1- Experiment 3).
DOI: 10.5061/dryad.hf124/10
title: Torosteus_Postsuborbital_MVP230808
DOI: 10.5061/dryad.hf124/11
title: Torosteus_Suborbital_MVP230808
DOI: 10.5061/dryad.hf124/12
title: V79_large_model
DOI: 10.5061/dryad.hf124/13
title: V79_small_model
DOI: 10.5061/dryad.hf124/14
title: V244_suborbital
DOI: 10.5061/dryad.hf124/7
title: Speonesydrion_ANU49340_anterior
DOI: 10.5061/dryad.hf124/8
title: Speonesydrion_ANU49340_posterior
DOI: 10.5061/dryad.hf124/9
title: torosteidsp_Postsuborbital_SAMP50606
DOI: 10.5061/dryad.jv5rj/1
title: Dispersing Hydrophobic Natural Colorant β-carotene in Shellac Particles for Enhanced Stability and Tunable Color

description: Dispersing Hydrophobic Natural Colorant β-carotene in Shellac Particles for Enhanced Stability and Tunable Color
DOI: 10.5061/dryad.kj239/1
title: Tomiya & Meachen wolf postcrania data Dryad_v2017_11_14

description: All measurements (in mm) were taken by the authors using digital calipers. See Electronic Supplementary Material text S1 and table S1 for institutional abbreviations and metric variables. "FAM" = F:AM. Sample abbreviations: NTC, Natural Trap Cave; RLB, Rancho La Brea gray wolves. All specimens represent the gray wolf (Canis lupus) except for those listed as Canis dirus. Years in brackets are probable years of collection. Subspecific identity of USNM A3497 is not recorded in USNM database, but we tentatively consider it to represent C. l. nubilus based on its locality and measurements. USNM A977 is reported as C. l. nubilus in the database, but its subspecific identification is questionable (see main text).
DOI: 10.5061/dryad.md268/2
title: Video data for all of the attack flights of peregrine falcons (Falco peregrinus) that were analysed in the paper.

description: The raw video data relating to our publication are stored in the accompanying zipped archive (.zip file) containing Quicktime movie (.mov) files readable in Quicktime Version 7 or later (Apple, Inc.). The videos are recorded and stored at 30 fps, and are compressed using the h264 codec. Each video is named in the format XxddmmyyZ.mov, the naming conventions for which are described in the accompanying README file. The videos show footage collected from either a video camera carried in the back of the bird, or a video camera carried by the remotely piloted aircraft towing the target.
DOI: 10.5061/dryad.mg249/1
title: Temperature and fitness data for Atlantic bluefin tuna in their spawning grounds

description: Average daily temperature (ºC) records in the major spawning  grounds for Atlantic bluefin tuna and the predicted egg fitness or probability of survival of eggs from hatching to the postflexion stage estimated from the model described in the main text.
DOI: 10.5061/dryad.p8p8q/1
title: Lyme Bay towed bottom fishing impact public data

description: Contains data for the abundance and size of nine different species of epifauna sampled across Lyme Bay in 2007 and 2016. The data is derived from underwater video surveys of the same locations on each sampling date. The surveys are distributed across locations within Lyme Bay that were subjected to different fishing histories such that we were able to estimate a recovery rate for some of the species studied.
DOI: 10.5061/dryad.ps441/1
title: Microsatellite-tree

description: Microsatellite dataset, R script and tree of 445 strains indicating the phylogenic position of 4CAR1 and T73 used for QTL mapping. Read me text is included in the compressed archive
DOI: 10.5061/dryad.ps441/2
title: Phenotypic data for QTL analysis

description: Description: comma-seperated values file containing the phenotype data of 130 evaluated segregant strains (Id).
DOI: 10.5061/dryad.pv805/1
title: ectopic
DOI: 10.5061/dryad.qq11c/10
title: Prokaryote 16S
DOI: 10.5061/dryad.qq11c/5
title: Crust 16S
DOI: 10.5061/dryad.qq11c/7
title: Mam 16S
DOI: 10.5061/dryad.qq11c/8
title: Sym 23S
DOI: 10.5061/dryad.qq11c/9
title: trnL
DOI: 10.5061/dryad.v5978/1
title: Pacific and Atlantic Marine Bivalve Range and Sizes

description: Dataset of Pacific and Atlantic marine bivalve data gathered from published literature including biogeographic range (latitude, longitude, depth), body size, taxonomy, and an estimate of particulate organic carbon over the species geographic range.
DOI: 10.5061/dryad.v5978/2
title: Atlantic Deep-Sea Bivalves

description: Biogeographic and ecological data for deep-sea bivalves.  Location data based on Allen (2008).  Read McClain et al. (2011) for more details (doi: 10.1098/rspb.2011.2166)
DOI: 10.5061/dryad.v5978/3
title: Ecological modes of fossil bivalve genera

description: This data set contains ecological modes of life assigned to fossil bivalve genera with stage-level resolution first and last appearance dates.
DOI: 10.5061/dryad.v6q0p/4
title: Buddleja COSII loci concatenated alignment
DOI: 10.5061/dryad.v6q0p/5
title: Buddleja PPR loci concatenated alignment
DOI: 10.5061/dryad.v6q0p/6
title: Buddleja taxon-specific loci concatenated alignment
DOI: 10.5061/dryad.25m10/2
title: Supplemental Figure 3 from Chapter 5

description: Hierarchal tree of underrepresented GO terms within the set of downregulated genes in ΔrpnR. Boxes highlighted in red represent GO terms that are underrepresented. A black edge between two nodes means “regulates”, a light blue edge “is part of”.
DOI: 10.5061/dryad.25m10/3
title: Supplemental Figure 4 from Chapter 5

description: Hierarchal tree of overrepresented GO terms within the set of
upregulated genes in ΔrpnR. Boxes highlighted in green represent GO terms that are overrepresented. A black edge between two nodes means “regulates”, a light blue edge “is part of”.
DOI: 10.5061/dryad.2b879/1
title: Data obtained from laboratory and field evaluation of Smartphone called the BROAD Life phone

description: This is data obtained from systematic evaluation of an air pollution measuring smartphone, known as the BROAD Life mobile phone. The output of the mobile phone was  bench-marked against the output of six different standard measuring instruments. In the data files, M1 stands for BROAD phone-1 and M2 stands for BROAD phone-2. The standard instruments were designated as follow, Aerosol Particle Analyser as APS, Formalldehyde Analyser as FA, Dusttrak as DT, Optical Particle Counter as OPC, Scanning Mobility Particle Sizer as SMPS and TEOM as TEOM.
DOI: 10.5061/dryad.541pt/1
title: SI_matrices

description: Edited morphological data matrices (TNT format) for each dataset with specific character codings, character partitions, and molecular trees
DOI: 10.5061/dryad.58fv8/1
title: Scale dependence of the diversity–stability relationship in temperate grassland

description: Spatial scales; ecosystem stability; alpha, beta, and gamma diversity.
DOI: 10.5061/dryad.678rp/4
title: Crenicichla_SVDquartets_50percent_allvariablesites

description: This file contains the unrooted RADseq Crenicichla phylogeny based on a 50% matrix from all variable sites. File is in tree format. See the supplementary material for details.
DOI: 10.5061/dryad.678rp/5
title: Crenicichla_SVDquartets_50percent_fixedsites

description: This file contains the unrooted RADseq Crenicichla phylogeny based on a 50% matrix from fixed sites only. File is in tree format. See the supplementary material for details.
DOI: 10.5061/dryad.678rp/6
title: Crenicichla_SVDquartets_70percent_allvariablesites

description: This file contains the unrooted RADseq Crenicichla phylogeny based on a 70% matrix from all variable sites. File is in tree format. See the supplementary material for details.
DOI: 10.5061/dryad.678rp/7
title: Crenicichla_SVDquartets_70percent_fixedsites

description: This file contains the unrooted RADseq Crenicichla phylogeny based on a 70% matrix from fixed sites only. File is in tree format. See the supplementary material for details.
DOI: 10.5061/dryad.6j336/1
title: Data Matrix - tnt file

description: Analysis without neosauropodan taxa. see File "Phylogenetic analysis" for more information.
DOI: 10.5061/dryad.6j336/2
title: Data Matrix - Discrete character taxon matrix analyses

description: Data matrix containing the additional five neosauropodan taxa - used in the discrete character taxon matrix analyses
DOI: 10.5061/dryad.6j336/3
title: Results - Evolutionary rates 1

description: Results of the analysis of rates of evolution when the Oxford Braincase and Cetiosaurus are treated as distinct OTUs
DOI: 10.5061/dryad.6j336/4
title: Results - Evolutionary rates 2

description: Results of the analysis of rates of evolution when the Oxford Braincase and Cetiosaurus are combined in a single OTU
DOI: 10.5061/dryad.6j336/5
title: Phylogenetic Analysis

description: Details of the phylogenetic analysis: details of the data matrix used in the analysis, character list, strict consensus tree, reduced strict consensus tree.
DOI: 10.5061/dryad.77hk7/1
title: Figure1

description: Number of spores per individual fruiting body (column 2) across eight independent replicates (column 1: T1 to T8).
DOI: 10.5061/dryad.77hk7/2
title: Number of spores produced per natural isolate

description: This table contains the name of the isolate (column 1) and the number of spores in individual fruiting bodies across four indented replicates (columns 2 to 6: T1 to T4).
DOI: 10.5061/dryad.77hk7/3
title: Number of cooperator and cheater per fruiting body

description: Number of spores belonging to cooperator genotype (column 4: GJV1) and cheater genotype(column 3:OC) per fruiting body (column 2: FB) and per independent experiment (column 1: Exp). Log values for cooperator and cheater are also presented (Log.GJV1 and Log.OC respectively)
DOI: 10.5061/dryad.78g8h50/1
title: Experiment_I_data

description: Leaf litter consumption data from an experiment manipulating leaf litter richness (one to six species of leaf litter) offered to Gammarus fossarum amphipods in experimental mesocosms.
DOI: 10.5061/dryad.78g8h50/2
title: Experiment_II_data

description: Leaf litter consumption in an experiment manipulating amphipod species richness (1-3 amphipod species) in experimental mesocosms.
DOI: 10.5061/dryad.78g8h50/3
title: allometric_data

description: Size-to-weight allometrics for six species of leaf litter used in Experiment I and II.
DOI: 10.5061/dryad.78g8h50/4
title: C-N_litter

description: Carbon and nitrogen content of six species of leaf litter used in Experiment I and II.
DOI: 10.5061/dryad.78g8h50/5
title: P_litter

description: Phosphorus content of six species of leaf litter used in Experiment I and II.
DOI: 10.5061/dryad.78g8h50/6
title: Meta-analysis_data

description: Data on leaf litter consumption by amphipods used in the meta-analysis, including conversion factors used to standardize units across studies.
DOI: 10.5061/dryad.7tv59/1
title: Schneider et al. Data
DOI: 10.5061/dryad.7tv59/2
title: Schneider et al. Flatwing 1 (Supplement)
DOI: 10.5061/dryad.7tv59/3
title: Schneider et al. Flatwing 2 (Supplement)
DOI: 10.5061/dryad.7tv59/4
title: Schneider et al. Flatwing 3 (Supplement)
DOI: 10.5061/dryad.7tv59/5
title: Schneider et al. Flatwing 4 (Supplement)
DOI: 10.5061/dryad.7tv59/6
title: Schneider et al. Normal-Wing (Supplement)
DOI: 10.5061/dryad.813mf/1
title: Galaxy9-[F__ORFs]

description: Fasta format file containing contigs with ORFS used in the study. Contigs were a subset of denovo assembly of the transcriptome reads obtained for this study. The raw reads are available from SRA (see original publication for accession numbers)
DOI: 10.5061/dryad.813mf/2
title: popGenFilt3

description: Tabular text file containing the diversity statistics and extra information on each contig that was polymorphic. See the readme file for details on the meaning of each statistic
DOI: 10.5061/dryad.c45cd/3
title: QuanMat_loc_Teno-2016-12-14

description: Interaction matrix for Teno site.
DOI: 10.5061/dryad.c45cd/4
title: QuanMat_loc_Tenerife Syd-2016-12-14

description: Interaction matrix for Tenerife South site.
DOI: 10.5061/dryad.c45cd/5
title: QuanMat_loc_Gran Canaria-2016-12-14

description: Interaction matrix for Gran Canaria site.
DOI: 10.5061/dryad.c45cd/6
title: QuanMat_loc_Gomera-2016-12-14

description: Interaction matrix for Gomera site.
DOI: 10.5061/dryad.c45cd/7
title: QuanMat_loc_Fuerteventura-2016-12-14

description: Interaction matrix for Fuerteventura site.
DOI: 10.5061/dryad.c45cd/8
title: QuanMat_loc_El Hierro-2016-12-14

description: Interaction matrix for El Hierro site.
DOI: 10.5061/dryad.cq63m/1
title: Supplementary Fig. S1.

description: Best ML tree with branch support from 100 thorough bootstrap replicates for dataset i, ALL
DOI: 10.5061/dryad.cq63m/2
title: Supplementary Fig. S2.

description: Best ML tree with branch support from 100 thorough bootstrap replicates for dataset ii, MISSING
DOI: 10.5061/dryad.cq63m/3
title: Supplementary Fig. S3.

description: Best ML tree with branch support from 100 thorough bootstrap replicates for dataset iii, COVERAGE
DOI: 10.5061/dryad.cq63m/4
title: Supplementary Fig. S4.

description: Best ML tree with branch support from 100 thorough bootstrap replicates for dataset iv, ALL_ROGUE
DOI: 10.5061/dryad.cq63m/5
title: Supplementary Fig. S5.

description: Best ML tree with branch support from 100 thorough bootstrap replicates for dataset v, MISSING_ROGUE
DOI: 10.5061/dryad.cq63m/6
title: Supplementary Fig. S6.

description: Best ML tree with branch support from 100 thorough bootstrap replicates for dataset vi, COVERAGE_ROGUE
DOI: 10.5061/dryad.cq63m/7
title: Supplementary Fig. S7.

description: Best ML tree with branch support from 100 rapid bootstrap replicates with outgroup Nematocera
DOI: 10.5061/dryad.d8p78.2
title: Data from: Learning of salient prey traits explains Batesian mimicry evolution
DOI: 10.5061/dryad.d8p78.2/1.2
title: Discrimination learning data
DOI: 10.5061/dryad.d8p78.2/2.2
title: Generalization test data
DOI: 10.5061/dryad.d8p78.2/3.2
title: Salience test - discrimination learning
DOI: 10.5061/dryad.f1948/1
title: Root_Ecology_supplementary_materials
DOI: 10.5061/dryad.gp78p/1
title: Keller_etal_2017_JoH_SNPdata_DRYAD

description: Diploid genotypes for 291 SNP loci identified from 27 flowering time genes. SNPs were genotyped using the Sequenom i-Plex assay on 1021 Populus balsamifera individuals, along with 12 individuals from other
DOI: 10.5061/dryad.hf124/15
title: V79
DOI: 10.5061/dryad.k6491/1
title: Data from Boulton et al. Evolution paper
DOI: 10.5061/dryad.ps441/3
title: Genotypes of all_final

description: Description: genotype file at R-QTL format, containing the identities of 3457 markers for 125 segregant strains (Id) that were used for the QTL mapping. These makers have a minim distance of 2kb between them.  Identity "A" corresponds to nucleotide contributed by parent 4CAR1, identity "B" corresponds to nucleotide contributed by parent T73. First line contains the Id of each marker : “chromosome_coordinates”, line 2 indicates the chromosome, and line 3 indicates the coordinates in cm (coordinates / 3000)
DOI: 10.5061/dryad.ps441/4
title: SNPeffect

description: Description: comma-seperated values file listing all  SNPs between the parent strains of the study, 4CAR1 and T73 with potential effect. The effects of SNPs on genes was predicted by SnpEff version 4.1.
DOI: 10.5061/dryad.q70b05k9/1
title: Supplementary Data

description: Supplementary data file containing three appendices. APPENDIX 1: MORPHOMETRIC ANALYSIS OF Cryptelytrops macrops. Appendix 2: Additional figures and tables from population genetic analyses. Appendix 3: Details of AFLP primers used.
DOI: 10.5061/dryad.q70b05k9/2
title: AFLP Datafile

description: Text file containing presence/absence data from 298 AFLP loci for 50 inidividuals of Cryptelytrops group species.
DOI: 10.5061/dryad.q70b05k9/3
title: mtDNA used in mtDNA tree

description: Nexus file containing miochondrial 12S, 16S rRNA and NADH4 gene sequences for 44 taxa (used in constructing the mtDNA-only phylogeny)
DOI: 10.5061/dryad.s5n3c/1
title: Exposure and consequence scores for each habitat-stressor combination
DOI: 10.5061/dryad.s5n3c/2
title: Cumulative risk for each habitat.
DOI: 10.5061/dryad.t9q61/1
title: DGRP_data

description: The data are split across six sub-datasets according to the questions / analyses in the manuscript.
DOI: 10.5061/dryad.036ds/1
title: Passive screening and patients treated for HAT

description: Passive screening database, HAT treated patients database, thesaurus, data used for the article figures 3A to 3F.
DOI: 10.5061/dryad.12111/1
title: Phylogeny used for the empirical analysis

description: Species-level time-calibrated molecular phylogeny of DNA including the 69 European and North American tree species used in the empirical analysis of the study (subset of a higher-rank phylogeny including 889 European and North American tree species, see Appendix 2 in Supplementary Material)
DOI: 10.5061/dryad.1cd62/1
title: CaglaStevenson.RawData
DOI: 10.5061/dryad.23vc1/1
title: Acceleration data

description: Depth, body and head acceleration data from 8 Magellanic penguins and 10 Imperial cormorants
DOI: 10.5061/dryad.38d4j60/1
title: Field data - Quantifying floristic and structural forest maturity

description: This file contains all field data. The first tab describes what is included.
DOI: 10.5061/dryad.393n5/1
title: Simao_et_al_2018_Data

description: Data file contains complete data set from 2015 and 2016 field collections of bees, as well as floral and nesting landscape data.
DOI: 10.5061/dryad.44mt9/1
title: Data for both species

description: Complete dataset used in this article
DOI: 10.5061/dryad.4607d/1
title: Fertilization success and MHC divergence for jack and hooknose males

description: Data includes number of eggs fertilized by jack and hooknose males within each sire pair with each female, as well as the percentage of eggs sired by a jack male for each competition. Data includes major histocompatibility amino acid divergence for each sire pair x female combination. Data are provided for each time point post-activation (0, 15 and 60 seconds).
DOI: 10.5061/dryad.5st8m/1
title: R markdown for reproducible workflow

description: R markdown file containing the fully reproducible workflow of the study.
DOI: 10.5061/dryad.5st8m/2
title: Built reproducible workflow

description: Built reproducible workflow containing all analyses of the study including (low quality versions of) all figures & tables.
DOI: 10.5061/dryad.5st8m/3
title: Phenotypic data

description: Phenotypic data file used for empirical example of study. Data from Harmon LJ, Losos JB, Davies TJ, Gillespie RG, Gittleman JL, Bryan Jennings W, Kozak KH, McPeek MA, Moreno-Roark F, Near TJ, Purvis A, Ricklefs RE, Schluter D, Schulte II JA, Seehausen O, Sidlauskas BL, Torres-Carvajal O, Weir JT, Mooers AØ (2010) Data from: Early bursts of body size and shape evolution are rare in comparative data. Dryad Digital Repository. https://doi.org/10.5061/dryad.f660p
DOI: 10.5061/dryad.5st8m/4
title: Phylogeny of lizard tribe Liolaemini

description: File containing phylogeny of lizard tribe Liolaemini. Phylogeny data from Harmon LJ, Losos JB, Davies TJ, Gillespie RG, Gittleman JL, Bryan Jennings W, Kozak KH, McPeek MA, Moreno-Roark F, Near TJ, Purvis A, Ricklefs RE, Schluter D, Schulte II JA, Seehausen O, Sidlauskas BL, Torres-Carvajal O, Weir JT, Mooers AØ (2010) Data from: Early bursts of body size and shape evolution are rare in comparative data. Dryad Digital Repository. https://doi.org/10.5061/dryad.f660p