cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0131799.10fu
title: SH0131799.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive143628.20251217.10
title: Streptococcus pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive143629.20230509.8.1
title: Leuconostoc sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive143629.20251217.10
title: Leuconostoc sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0131800.10fu
title: SH0131800.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.w9c8ky
title: Occurrence Download

description: A dataset containing 43703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chordata",
 "PublishingCountry is Zimbabwe",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 43703 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002144-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/4983
title: NovelStory
DOI: 10.5281/zenodo.11396827
title: Survey with game development companies on personal data protection

description: Dataset linked to the article: Investigating the Implementation of Data Protection Laws in Brazilian Game Companies: An Initial Study
DOI: 10.5281/zenodo.11396828
title: Survey with game development companies on personal data protection

description: Dataset linked to the article: Investigating the Implementation of Data Protection Laws in Brazilian Game Companies: An Initial Study
DOI: 10.5281/zenodo.14599586
title: Alignment of the Serine Protease family

description: Dataset containing the files for the alignment of the Serine Protease protein family.



serprot_ref.faa: manually curated alignment of 1390 members of the Serine Protease family for the Halabi Sector paper.

serprot.hmm: HMM profile made using hmmbuild from the serprot_ref.faa alignment.

serprot_matches.stk: Stockholm file containing the output of the hmmsearch on the UniProt database using the serprot.hmm profile.

new_aln0.faa: FASTA file with the MSA after conversion from Stockholm using the stk2fasta.pl script.

new_aln.faa: FASTA file with the MSA after running the code of the 00_alignment_cleaning.ipynb notebook.

iter_aln.faa: FASTA file with the MSA after running the code of the 01_compact_alignment.ipynb notebook.





MSA file
MSA description
L (number of positions)
M (number of sequences)


serprot_ref.faa
Reference alignment of Serine Proteases, manually curated for the Halabi Sector paper.
823
1 390


new_aln0.faa
Alignment coming from the hmmsearch using the HMM profile made with serprot_ref.faa.
823
189 304


new_aln.faa
Alignment coming from the 00_alignment_cleaning.ipynb notebook.
693
101 543


iter_aln.faa
Alignment coming from the 01_compact_alignment.ipynb notebook.
260
101 543
DOI: 10.5281/zenodo.15089841
title: Alignment of the Serine Protease family

description: Dataset containing the files for the alignment of the Serine Protease protein family.



serprot_ref.faa: manually curated alignment of 1390 members of the Serine Protease family for the Halabi Sector paper.

serprot.hmm: HMM profile made using hmmbuild from the serprot_ref.faa alignment.

serprot_matches.stk: Stockholm file containing the output of the hmmsearch on the UniProt database using the serprot.hmm profile.

new_aln0.faa: FASTA file with the MSA after conversion from Stockholm using the stk2fasta.pl script.

new_aln.faa: FASTA file with the MSA after running the code of the 00_alignment_cleaning.ipynb notebook.

iter_aln.faa: FASTA file with the MSA after running the code of the 01_compact_alignment.ipynb notebook.

iter_aln_dedup.faa: FASTA file with the MSA without duplicate sequences.





MSA file
MSA description
L (number of positions)
M (number of sequences)


serprot_ref.faa
Reference alignment of Serine Proteases, manually curated for the Halabi Sector paper.
823
1 390


new_aln0.faa
Alignment coming from the hmmsearch using the HMM profile made with serprot_ref.faa.
823
189 304


new_aln.faa
Alignment coming from the 00_alignment_cleaning.ipynb notebook.
693
101 543


iter_aln.faa
Alignment coming from the 01_compact_alignment.ipynb notebook.
260
101 543


iter_aln_dedup.faa
Alignment coming from the deduplication of iter_aln.faa.
260
82 021
DOI: 10.5281/zenodo.15089812
title: GGES

description: This is for educational purposes only.
DOI: 10.5281/zenodo.15089813
title: GGES

description: This is for educational purposes only.
DOI: 10.15468/dl.9vvxan
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "Month is one of (January, November, December)",
 "TaxonKey is Ardea alba Linnaeus, 1758",
 "Year 1980-1998"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002145-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyazcr
title: Occurrence Download

description: A dataset containing 325902 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chordata",
 "PublishingCountry is South Africa",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 325902 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002137-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p14peiav
title: Code to assemble and generate output for an integrated population model of the endangered Cape Sable Seaside Sparrow

description: This data release contains the R code to run an integrated population model (IPM) for the Cape Sable Seaside Sparrow (CSSS; Ammospiza maritima mirabilis), a federally endangered bird endemic to a small part of the Everglades in southern Florida, USA, and provides the parameter estimates from the model. The IPM synthesizes thirty years (1992-2021) of range-wide surveys, mark-resight, and nest monitoring data to estimate annual abundance, apparent survival, fecundity, and growth for six separately managed CSSS ‘subpopulations’ (A-F). A suite of hydrologic and fire metrics within occupied and potentially occupied areas for each subpopulation were calculated to evaluate the effects of hydroperiod on juvenile and adult survival, and the effects of water depth variability, amount of dry area, time since fire, and percent area burned on fecundity. Hydrologic metrics were derived from daily Everglades Depth Estimation Network water stage surfaces from 1991–2021 and fire metrics were derived from shapefiles of daily fire extent and dates for the years 1983–2021 from the National Park Service. Data and R code to calculate hydrologic and fire metrics are provided in this data release. CSSS data are not provided owing to restrictions on endangered species.
DOI: 10.15468/dl.42aju7
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Netherlands",
 "Month is one of (January, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ardea alba Linnaeus, 1758",
 "Year 1980-1998"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002146-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrucve
title: Occurrence Download

description: A dataset containing 1312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 7a070ba0-bafb-11d9-8e53-b8a03c50a862",
 "TaxonKey is Salamandra atra Laurenti, 1768"
 ]
}

 The dataset includes 1312 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002147-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aypn7p
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mimosa pudica L."
 ]
}

 The dataset includes 171 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002148-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzvds3
title: Occurrence Download

description: A dataset containing 325902 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chordata",
 "PublishingCountry is South Africa",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 325902 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002141-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eafzaw
title: Occurrence Download

description: A dataset containing 168457 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Micropterus salmoides (Lacepède, 1802)"
 ]
}

 The dataset includes 168457 records from 398 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002140-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eaxzgq
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Austria",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Spialia sertorius (Hoffmannsegg, 1804)",
 "Year 2015-2025"
 ]
}

 The dataset includes 129 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002150-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7uke5h
title: Occurrence Download

description: A dataset containing 1821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Canis aureus Linnaeus, 1758",
 "Year 2000-2025"
 ]
}

 The dataset includes 1821 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002149-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00004805.1
title: Available IPD datapackage for study 'A Randomized, Double-Blind, Placebo-Controlled, 3-Arm, Parallel-Group, Multicenter Study to Evaluate the Efficacy, Safety, and Tolerability of Canagliflozin in the Treatment of Subjects With Type 2 Diabetes Mellitus With Inadequate Glycemic Control on Metformin and Pioglitazone Therapy'

description: The purpose of this study is to evaluate the efficacy and safety of 2 different doses of canagliflozin compared with placebo in patients with type 2 diabetes mellitus who are receving treatment with metformin and pioglitazone and have inadequate glycemic (blood sugar) control.
DOI: 10.5281/zenodo.15089877
title: The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry SUPPORTING INFORMATION

description: The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry SUPPORTING INFORMATION 

See publication for full author list
DOI: 10.5281/zenodo.15089878
title: The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry SUPPORTING INFORMATION

description: The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry SUPPORTING INFORMATION 

See publication for full author list
DOI: 10.15468/dl.jq65bd
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Areca camarinensis Becc., Areca caliso Becc.)"
 ]
}

 The dataset includes 62 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002152-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9cg2b
title: Occurrence Download

description: A dataset containing 78065 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Netherlands",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Parus major Linnaeus, 1758",
 "Year 2024-2024"
 ]
}

 The dataset includes 78065 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002143-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.az9z4n
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Brazil, Paraguay, Argentina)",
 "TaxonKey is Poospiza thoracica (Nordmann, 1835)"
 ]
}

 The dataset includes 97 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002154-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77udp7
title: Occurrence Download

description: A dataset containing 5410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Brazil, Argentina, Paraguay)",
 "TaxonKey is Microspingus lateralis (Nordmann, 1835)"
 ]
}

 The dataset includes 5410 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002155-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7sfhm
title: Occurrence Download

description: A dataset containing 824 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Hong Kong, Chinese Taipei, China)",
 "TaxonKey is Oreochromis mossambicus (Peters, 1852)"
 ]
}

 The dataset includes 824 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002156-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88yvbh
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Slovakia",
 "OccurrenceStatus is Present",
 "TaxonKey is Bolbelasmus unicornis (Schrank, 1789)",
 "Year 2000-2025"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002158-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u99n66
title: Occurrence Download

description: A dataset containing 8953 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Brazil, Argentina, Paraguay)",
 "TaxonKey is Microspingus cabanisi (Bonaparte, 1850)"
 ]
}

 The dataset includes 8953 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002159-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jbgju
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Austria",
 "TaxonKey is Ophrys holoserica (Burm.f.) Greuter",
 "Year 2015-2025"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002160-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmmdwg
title: Occurrence Download

description: A dataset containing 7911 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bryonia alba L."
 ]
}

 The dataset includes 7911 records from 243 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002161-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hhqhtz
title: Occurrence Download

description: A dataset containing 1126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((85.42006 -36.21320,191.57994 -36.21320,191.57994 6.21320,85.42006 6.21320,85.42006 -36.21320))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyperus aquatilis R.Br."
 ]
}

 The dataset includes 1126 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002162-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/qxqf-kbc4
title: Aerosol light scattering at Prague-Suchdol

description: Measurement of Aerosol light scattering at Prague-Suchdol
DOI: 10.48597/wpwb-cbg8
title: Measurement of Aerosol light scattering at Prague-Suchdol

description: Measurement of Aerosol light scattering at Prague-Suchdol
DOI: 10.5281/zenodo.15089951
title: Rapid unimolecular reactions of acyl peroxy radicals: extending the structure-activity relationships

description: Computational output files and reaction rates for short-lived atmospheric acyl peroxy radicals. Each folder contains all output files for a certain reaction type, cetegorized by molecule, along with a folder containing the reaction rates from 200 K to 450 K.
DOI: 10.5281/zenodo.15089952
title: Rapid unimolecular reactions of acyl peroxy radicals: extending the structure-activity relationships

description: Computational output files and reaction rates for short-lived atmospheric acyl peroxy radicals. Each folder contains all output files for a certain reaction type, cetegorized by molecule, along with a folder containing the reaction rates from 200 K to 450 K.
DOI: 10.57967/hf/4984
title: NovelStory
DOI: 10.15468/dl.mfgebk
title: Occurrence Download

description: A dataset containing 513164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Felidae"
 ]
}

 The dataset includes 513164 records from 1673 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002157-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2p5dud
title: Occurrence Download

description: A dataset containing 6009 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico",
 "Country is Guatemala",
 "Country is Belize",
 "Country is El Salvador",
 "Country is Honduras",
 "Country is Nicaragua",
 "Country is Costa Rica",
 "Country is Panama"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bromus tectorum L."
 ]
}

 The dataset includes 6009 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026250-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.th6a8f
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba schusteri O.E.Schulz"
 ]
}

 The dataset includes 40 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039168-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111323791
title: Cuneiform Tablet

description: [Text Description:] Cuneiform Tablet, Administrative Tag, with Seal Impressions ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script, roughly triangular In shape.