cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.mw6m905zp
title: Data from: Unravelling the causes and consequences of dispersal syndromes in a wild passerine

description: Evidence accumulates that dispersal is correlated with individual
 behavioural phenotype (‘dispersal syndrome’). The evolutionary causes and
 consequences of such covariation depend on the degree of plasticity vs
 inheritance of the traits, which requires challenging experiments to
 implement in mobile organisms. Here, we combine a forced dispersal
 experiment, natural colonisation and longitudinal data to establish if
 dispersal and aggression levels are integrated and to test their adaptive
 nature in pied flycatchers (Ficedula hypoleuca). We found that (forced)
 dispersers behaved more aggressively in their first breeding year after
 dispersal and decreased their aggression in following years. Strength of
 dispersal syndrome and direction of fecundity selection on aggression in
 newly colonised areas varied between years. We propose that the net
 benefits of aggression for dispersers increase under harsh conditions
 (e.g. low food abundance). This hypothesis now warrants further testing.
 Overall, this study provides unprecedented experimental evidence that
 dispersal syndromes can be remodelled via adaptive plasticity depending on
 the individuals’ local breeding experience and/or year-specific ecological
 conditions. It highlights the importance of individual behavioural
 variation in population dynamics.
description: These data were collected in the field through
 'classical' monitoring of ringed bird breeding in nestboxes
 (laying date, clutch size, number and mass of fledglings etc). Aggression
 behavioural data were collected in the field via simulated territorial
 intrusion (see manuscript for details). Collected data
 were immediately entered into an Access database. Relevant data were
 extracted trhough queries and then filtered and analysed in R (see
 provided scripts)
description: Missing values are indicated by NA check R
 scripts to see how data were selected and to see which dataset was used in
 each analysis
DOI: 10.5061/dryad.0rxwdbs2w
title: Risky business: how an herbivore navigates spatio-temporal aspects of risk from competitors and predators

description: Understanding factors that influence animal behavior is central to
 ecology. Basic principles of animal ecology imply that individuals should
 seek to maximize survival and reproduction, which means carefully weighing
 risk against reward. Decisions become increasingly complex and
 constrained, however, when risk is spatiotemporally variable. We advance a
 growing body of work in predator-prey behavior by evaluating novel
 questions where a prey species is confronted with multiple predators and a
 potential competitor. We tested how fine-scale behavior of female mule
 deer (Odocoileus hemionus) during the reproductive season shifted
 depending upon spatial and temporal variation in risk from predators and a
 potential competitor. We expected female deer to avoid areas of high risk
 when movement activity of predators and a competitor were high. We used
 GPS data collected from 65 adult female mule deer, 35 adult female elk, 33
 adult coyotes, and six adult mountain lions. Counter to our expectations,
 female deer exhibited selection for multiple risk factors, however,
 selection for risk was dampened by the exposure to risk within deer home
 ranges, producing a functional response in habitat selection. Furthermore,
 temporal variation in movement activity of predators and elk across the
 diel cycle did not result in a shift in movement activity by female deer.
 Instead, the average level of risk within their home range was the
 predominant factor modulating the response to risk by female deer. Our
 results counter prevailing hypotheses of how large herbivores navigate
 risky landscapes, and emphasize the importance of accounting for the local
 environment when identifying effects of risk on animal behavior. Moreover,
 our findings highlight additional behavioral mechanisms used by large
 herbivores to mitigate multiple sources of predation and potential
 competitive interactions.
DOI: 10.5061/dryad.4b8gthtff
title: Data from: The role of nutritional impairment in carbon-water balance of silver fir drought-induced dieback

description: Rear-edge populations at the xeric distribution limit of tree species are
 particularly vulnerable to forest dieback triggered by drought. This is
 the case of silver fir (Abies alba) forests located in the southwestern of
 Europe. While silver fir drought-induced dieback patterns have been
 previously explored, information on the role played by nutritional
 impairment is lacking despite its potential interactions with tree
 carbon-water balances. We performed a comparative analysis of radial
 growth, intrinsic water-use efficiency (iWUE), oxygen isotopes (δ18O) and
 nutrient concentrations in leaves of declining (DD) and non-declining (ND)
 trees in silver fir in four forests in the Spanish Pyrenees. We also
 evaluated the relationships among dieback predisposition, intraspecific
 trait variation (wood density and leaf traits) and rhizosphere soil
 physical – chemical properties. The onset of growth decline in DD trees
 occurred more than two decades ago, and they subsequently showed low
 growth resilience against droughts. The DD trees presented consistently
 lower foliar concentrations of nutrients such as P, K, Cu and Ni than ND
 trees. The strong effects of foliar nutrient status on growth resilience
 indices support the key role played by mineral nutrition in tree
 functioning and growth before, during and after drought. In contrast,
 variability in wood density and leaf morphological traits, as well as soil
 properties, showed weak relationships with tree nutritional status and
 drought performance. At the low elevation, warmer sites, DD trees showed
 stronger climate – growth relationships and lower δ18O than ND trees. The
 uncoupling between iWUE and δ18O, together with the positive correlations
 between P and K leaf concentrations and δ18O, point to deeper soil/bedrock
 water sources and vertical decoupling between nutrient and water uptake in
 DD trees. This study provides novel insights into the mechanisms driving
 silver fir dieback and highlights the need to incorporate tree nutrition
 into forest dieback studies.
DOI: 10.25338/b86q0k
title: Cryptic species of freshwater sculpin (Cottidae: Cottus) in California

description: The Riffle Sculpin (Cottus gulosus) is a small, bottom-dwelling fish
 regarded as widespread in the cool-water streams that flow into
 California’s Central Valley and into streams of the central California
 coast. Using population genomics, supported by other genetic,
 distributional, and meristic studies, we demonstrate that C. gulosus
 consists of three species with four subspecies (five lineages), all but
 one entirely endemic to California:   Cottus pitensis, Pit
 Sculpin Bailey and Bond 1963 Cottus gulosus, Inland Riffle Sculpin (Girard
 1854)
             C. g. gulosus: San Joaquin Riffle Sculpin (Girard 1854), nominate subspecies             C. g. wintu: Sacramento Riffle Sculpin, Moyle, Baumsteiger and Campbell 2022, new subspecies Cottus ohlone, Coastal Riffle Sculpin Moyle, Baumsteiger and Campbell 2022, new species             C. o. ohlone, Ohlone Riffle Sculpin Moyle, Baumsteiger and Campbell 2022, nominate subspecies             C. o. pomo, Pomo Riffle Sculpin Moyle Baumsteiger and Campbell 2022, new subspecies.   The three species are largely endemic to California watersheds although the range of C. pitensis extends into Oregon. All are confined to cool headwater streams or to rivers with cold water releases below dams. Their populations are increasingly isolated from one another because of anthropogenic changes to California’s river systems and some are threatened with extinction.  Providing taxonomic recognition of the distinct forms will improve conservation efforts on their behalf.   Zoobank publication lsid: urn:lsid:zoobank.org:pub:0590A223-BD2D-4B9E-8850-BEE818CA4D08   Zoobank species lsid for C. ohlone: urn:lsid:zoobank.org:act:8F6E51D6-5317-4F4E-9246-B2F30FBE7207
description: The data are SbfI RADseq and associated scripts and program
 outputs from analyses. These include fastq sequence data, demultiplexed
 sequences in fastq format, the reference assembly and alignments to
 it.
description: See the associated paper in Zootaxa for more context and the
 associated code repository
 https://github.com/MacCampbell/ca-cryptic-sculpins
DOI: 10.5061/dryad.mgqnk991w
title: Woodpecker drum evolution: an analysis of covariation in elements of a multicomponent acoustic display among and within species

description: Multicomponent signals are found throughout the animal kingdom, but how
 these elaborate displays evolve and diversify is still unclear. Here, we
 explore the evolution of the woodpecker drum display. Two components of
 this territorial, sexually selected signal, drum speed and drum length,
 are used by territory holders to assess the threat level of an intruding
 drummer. We explore the coevolution of these display components both among
 and within species. Among species, we find evidence for strong coevolution
 of drum speed and length. Within species, we find that drum speed and
 length vary largely independent of each other. However, in some species,
 there is evidence of covariation in certain portions of the drum length
 distribution. The observed differences in component covariation at the
 macro- and microevolutionary scales highlights the importance of studying
 signal structure both among and within species. In all cases of
 covariation at both evolutionary scales, the relationship between drum
 speed and length is positive, indicating mutual elaboration of display
 components, and not a performance trade-off.
DOI: 10.5281/zenodo.17950127
title: Database experimental data (dataset 3A of 4) "Visualization and quantification of gas-liquid mass transfer in a sparger flow using a wire-mesh sensor", dataset 3A of 4, co2 series

description: ## DATABASE EXPERIMENTAL DATA (DATASET 3 OF 4) "VISUALIZATION AND QUANTIFICATION OF GAS-LIQUID MASS TRANSFER IN A SPARGER FLOW USING A WIRE-MESH SENSOR", DATASET 3A OF 4, CO2 SERIESReference Open-Access journal publication: Alvaro Ramos Perez, Terttaliisa Lind, Victor Petrov, Annalisa Manera, Horst-Michael Prasser, Visualization and quantification of gas–liquid mass transfer in a sparger flow using a wire-mesh sensor, Chemical Engineering Science, Volume 320, Part A, 2026, 122360, ISSN 0009-2509, doi:10.1016/j.ces.2025.122360.

## THIS DATA CORRESPONDS TO THE DATASET 3A OF 4, CO2 SERIES. THE ENTIRE DATASET LIST OF THE PUBLICATION IS:-DATASET 1 OF 4, CALIBRATION SERIES-DATASET 2 OF 4, TRACER SERIES-DATASET 3A+3B OF 4, CO2 SERIES-DATASET 4 OF 4, AIR SERIES

## WMS DATA"README_WMS.txt": Description of data matrix "WMS.csv" and data format "WMS.zip"
DOI: 10.5281/zenodo.17950128
title: Database experimental data (dataset 3A of 4) "Visualization and quantification of gas-liquid mass transfer in a sparger flow using a wire-mesh sensor", dataset 3A of 4, co2 series

description: ## DATABASE EXPERIMENTAL DATA (DATASET 3 OF 4) "VISUALIZATION AND QUANTIFICATION OF GAS-LIQUID MASS TRANSFER IN A SPARGER FLOW USING A WIRE-MESH SENSOR", DATASET 3A OF 4, CO2 SERIESReference Open-Access journal publication: Alvaro Ramos Perez, Terttaliisa Lind, Victor Petrov, Annalisa Manera, Horst-Michael Prasser, Visualization and quantification of gas–liquid mass transfer in a sparger flow using a wire-mesh sensor, Chemical Engineering Science, Volume 320, Part A, 2026, 122360, ISSN 0009-2509, doi:10.1016/j.ces.2025.122360.

## THIS DATA CORRESPONDS TO THE DATASET 3A OF 4, CO2 SERIES. THE ENTIRE DATASET LIST OF THE PUBLICATION IS:-DATASET 1 OF 4, CALIBRATION SERIES-DATASET 2 OF 4, TRACER SERIES-DATASET 3A+3B OF 4, CO2 SERIES-DATASET 4 OF 4, AIR SERIES

## WMS DATA"README_WMS.txt": Description of data matrix "WMS.csv" and data format "WMS.zip"
DOI: 10.5061/dryad.x3ffbg7mr
title: Contrasting population genomic differentiation in two sympatric Triplophysa loaches on the Qinghai-Tibet Plateau

description: Under global climate change, the Qinghai-Tibet Plateau (QTP) has
 experienced dramatic environmental changes, including salinity changes of
 water bodies, which may threaten the biodiversity of aquatic organisms on
 the ‘roof of the world’. The Tibetan loaches (the genus Triplophysa) are
 the largest component of the QTP ichthyofauna. Here we compared the
 population structure and adaptive mechanisms to salinity of two sympatric
 Tibetan loach species, T. stewarti and T. stenura, using population
 genomics methods. Using both the ‘common’ and ‘individual’ SNP datasets of
 seven populations from five localities of the two species, we found out
 that the two species showed entirely different patterns of population
 differentiation, with T. stewarti populations deeply diverged and T.
 stenura populations mixed. We identified a catalogue of candidate genes
 possibly involved in salinity acclimatation of the two species using both
 unsupervised and supervised population differentiation methods. In this
 section, a new approach - linkage disequilibrium (LD) graph learning - was
 developed and utilized to identify clusters of loci showing similar
 genetic differentiation patterns. However, we found limited parallel
 adaptive signals to salinity of the two species using these methods. Our
 findings broaden our understandings of the population characteristics and
 adaptive mechanisms of these previously underexplored Tibetan loach
 species, and will play a role in the biodiversity protection of
 Triplophysa species on the QTP.
description: The files include SNPs and
 quantitative expression data based on RNA-seq underlying this study, as
 well as code for the newly developed unsupervised linkage disequilibrium
 (LD) graph learning method. 'two_species_common_snp_dataset.vcf.gz' - the common SNP dataset for the two species, <em>Triplophya stewarti</em> and <em>T. stenura</em>. 'Tstewarti_individual_snp_dataset.vcf.gz' - the individual SNP dataset for <em>T. stewarti</em>. 'Tstenura_individual_snp_dataset.vcf.gz' - the individual SNP dataset for <em>T. stenura</em>. 'expression_gene_count_matrix.csv' - the expression gene count matrix based on RNA-seq of the two species. 'LD graph learning.R' - code for linkage disequilibrium (LD) graph learning method.
DOI: 10.5061/dryad.r4xgxd2fg
title: Microbial community from species rich meadow supports plant specialists during meadow restoration

description: Soil properties and soil microbial communities can greatly affect plant
 communities, especially in disturbed ecosystems. However, their relative
 contribution to the final effect on plants has rarely been assessed. We
 manipulated the soil microbial community in microcosms by inoculating
 sterilized soils originating from preserved species-rich meadow and a
 restored meadow with a high and low diversity of microbial inoculum
 (manipulated by dilution of microbial community extract) from those soils
 in full factorial manner, yielding eight treatments (2 soil origins × 2
 inoculum sources × 2 levels of inoculum diversity). In general, the
 biomass of plant meadow specialists (Filipendula vulgaris, Phleum
 phleoides, and Prunella grandiflora) was greater with the preserved meadow
 inoculum than with the restored meadow inoculum but tended to be greater
 in the restored meadow soil than in the preserved meadow soil. Two meadow
 generalists (Festuca rubra, and Centaurea jacea) were not significantly
 affected by soil origin, inoculum source, or inoculum diversity, but third
 generalist Plantago media produced greater biomass in the preserved meadow
 soil than in the restored meadow soil. Total aboveground biomass was not
 affected by the treatments, but total belowground biomass was greater with
 microbial inoculum from the preserved meadow than from the restored
 meadow, and this increase was greater in the restored meadow soil than in
 the preserved meadow soil. Our results indicate strong responses of the
 preserved meadow specialists to the soil microbial community, which may
 explain why they are rare in the meadows that were restored following
 agricultural use.
description: We conducted an experiment and collected the data. We processed
 it by using Excel and statitical analysis programs.
description: We added all datasets here. If someone needs to know about
 statistical program, he/she can contact us. There is no missing value. We
 uploaded any necessary files.
DOI: 10.5061/dryad.8pk0p2nq9
title: High species turnover and unique plant–pollinator interactions make a hyperdiverse mountain

description: 1. We studied α- and β-diversity of pollinators, flowering plants, and
 plant–pollinator interactions along the altitudinal gradient of Mt.
 Olympus, a legendary mountain and biodiversity hotspot in Central Greece.
 2.  We explored ten study sites located on the north-eastern
 slope of the mountain, from 327 to 2,596 m a.s.l. Insect surveys were
 conducted once a month using hand netting (years 2013, 2014, and 2016),
 and they were combined with recordings of flowering plant diversity
 (species richness and flower cover). We then calculated α- and β-diversity
 of pollinators, plants in flower, and plant–pollinator interactions, and
 explored their demographic response along the altitudinal gradient. 3.
  Alpha‐diversity of pollinators, plants, and plant–pollinator
 interactions were altitude-dependent; α‐diversity of all pollinators,
 bees, non-bumblebee bees, bee flies, and butterflies showed linear
 declines with altitude, whereas those of hoverflies and bumblebees showed
 unimodal patterns. Beta-diversity and its turnover component of all
 pollinators, hoverflies, bees, bumblebees, non-bumblebee bees,
 butterflies, and plants showed linear increases, whereas those of bee
 flies and of plant–pollinator interactions varied independently from the
 pairwise altitudinal difference. 4.  The high dissimilarity and
 uniqueness of pollination networks, which is probably a result of the high
 biodiversity and endemism of Mt. Olympus, is driven by species turnover
 and the formation of new interactions between new species. Contrasting to
 the monotonic decline of the remaining groups, the unimodal patterns of
 hoverfly and bumblebee α‐diversity are probably the effect of a higher
 tolerance of these groups to high-altitude environmental conditions. Our
 findings highlight that the high turnover of species and of pollination
 interactions along the altitudinal gradient is the mainstay of
 hyperdiverse mountains, a fact that conveys important historical,
 ecological, and conservational implications.
description: Please see the README document
 ("README_Dataset_Olympus_Pollinators.txt") and the accompanying
 published article: Minachilis, K., Kantsa, A., Devalez, J., Vujic, A.,
 Pauly, A. & Petanidou, T. (2023). High species turnover and unique
 plant–pollinator interactions make a hyperdiverse mountain. Journal of
 Animal Ecology. DOI:10.1111/1365-2656.13898
DOI: 10.5061/dryad.ffbg79cx3
title: Functional constraints channel mandible shape ontogenies in rodents

description: In mammals, postnatal growth plays an essential role in the acquisition of
 the adult shape. During this period, the mandible undergoes many changing
 functional constraints, leading to spatialization of bone formation and
 remodelling to accommodate various dietary and behavioural changes. The
 interactions between the bone, muscles and teeth drive this developmental
 plasticity, which, in turn, could lead to convergences in the
 developmental processes constraining the directionality of ontogenies,
 their evolution and thus the adult shape variation. To test the importance
 of the interactions between tissues in shaping the ontogenetic
 trajectories, we compared the mandible shape at five postnatal stages on
 three rodents: the house mouse, the Mongolian gerbil and the golden
 hamster, using geometric morphometrics. After an early shape
 differentiation, either by longer gestation and allometric scaling in
 gerbils or early divergence of postnatal ontogeny in hamsters in
 comparison to the mouse, the ontogenetic trajectories appear more similar
 around weaning. The changes in muscle load associated to new food
 processing and new behaviours at weaning seem to impose similar physical
 constraints on the mandible driving the convergences of the ontogeny at
 that stage despite an early anatomical differentiation. Nonetheless, mice
 present a rather different timing compared to gerbils or hamsters.
description: Coordinates have been slided using the R package Morpho and a
 full generalized Procrsutes analysis was performed.
DOI: 10.5061/dryad.xpnvx0khk
title: Measures of infrastructure, browsing, and tree recruitment in Norway

description: The data have been used in a study on a possible trophic cascade of human
 activity close to human infrasturcture on moose browsing pressure and
 effects on tree recruitment in Norway. The data includes measures on
 distances to human infrastructure, browsing pressure, tree recruitment and
 several environmental variables, as well as variables connected to
 forestry. The datasets are as used for the analyses, while the original
 data are available from the Norwegian Forest Inventory, www.nibio.no).
 There are four dataset, which are further described in a textfile
 published along the datasets.
DOI: 10.5061/dryad.j3tx95xgw
title: Craniodental traits predict feeding performance and dietary hardness in a community of Neotropical free-tailed bats (Chiroptera: Molossidae)

description: Form-function studies have established a strong link between dental
 morphology and the mechanical properties of food items, with animals
 evolving tooth shapes theoretically ideal for their diets. However,
 information on how teeth perform under natural conditions is rare, which
 limits our understanding of how dental morphology influences dietary
 ecology and niche partitioning within animal communities. Free-tailed bats
 (Chiroptera: Molossidae) are a diverse clade of aerial insectivorous
 mammals that exhibit an outstanding variation in size and craniodental
 traits, which have been directly related to ecological segregation among
 sympatric species. We investigate the mechanisms that allow functional
 dietary specialization and trophic segregation among sympatric free-tailed
 bat species inhabiting a Neotropical forest. To do so, we coupled data on
 3D dental topographic metrics, head and skull dimensions, field-collected
 feeding performance and dietary hardness measurements. We found that
 evolved differences in molar topography and skull size vary in tandem with
 the mechanical demands of prey items naturally consumed by sympatric
 molossid species. This may be explained by feeding performance
 capabilities resulting from both molar shape and the overall size of the
 feeding apparatus, which seem to allow efficient processing of prey items
 with specific mechanical properties. For instance, smaller bats with
 higher molar topographic values (sharper, more complex molars) and more
 gracile heads mainly feed on softer insects, whereas bigger bats with
 lower molar topographic values (blunter, less complex molars) and more
 robust heads mostly feed on tougher insects. Species with a broader range
 of sizes, craniodental morphologies, and insect hardness are also present
 in the community. Our results illustrate how the morphology and size of
 feeding structures, and how they perform, may facilitate trophic
 segregation among sympatric insectivorous bats. Similar mechanisms may
 help structure other communities of insectivorous mammals, therefore the
 approaches presented here could be used to generate a better understanding
 of the ecomorphological traits and processes that underlie their
 diversity.