cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14306106.v1
title: Speech profile in Down syndrome: speech apraxia x speech disorder of musculoskeletal origin

description: ABSTRACT This study presents an analysis of linguistic aspects at the segmental and suprasegmental levels in individuals with Down syndrome with or without a diagnosis of speech apraxia. Ten individuals of both sexes, aged between 13 and 32 years, participated in the study. Data collection was performed, individually and separately, in a video recorded therapeutic session. Speech tasks consisted of word repetition, repetition of sentences and automatic speech. The speech samples were submitted to phonetic transcription with a description and analysis of phonoarticulatory alterations, typology of disfluencies and prosodic alterations. The data were submitted to descriptive and inferential statistical analysis, using the Mann-Whitney test for independent samples and considering p-value≤0.05 as significant. Individuals with speech apraxia (n=6), compared with those without it (n=4), presented a higher occurrence of phonoarticulatory alterations, with a statistically significant difference between the two groups in omission (p=0.018) and articulatory inaccuracy (p=0.030) alterations; a higher occurrence of disfluencies, mainly of the syllable repetition type; and the occurrence of prosodic alterations (83.3%), which was not found in the group without speech apraxia. The importance of the differential diagnosis of speech disorders in Down syndrome is revealed with an evaluation that considers the different linguistic aspects resulting from the differentiation of the characteristics of speech. Clinical intervention should be early and guided by specific parameters.
DOI: 10.17632/c679smj535
title: Sanz-Fernandez et al., 2023 JDS

description: Supplementary figures
DOI: 10.17632/w7j3pdjkgx
title: Dataset and Code of A CNN-Based Downscaling Model for Macau Temperature Prediction Using ERA5 reanalysis data

description: These dataset and DL model are used in the study: "A CNN-Based Downscaling Model for Macau Temperature Prediction Using ERA5 reanalysis data".
The netCDF format (.nc) dataset comes from ERA5. The model parameters and ERA5 exported data of the four CNN models are stored in four folders respectively.
Since the data file is too large, I will only upload the data of 41x41 experiment for now, and the data of the other three experiments will be uploaded later.
DOI: 10.6084/m9.figshare.27087190.v1
title: Clupper elasmobranch species identification using ZooMS

description: Raw .mzxml files for collagen peptide mass fingerprints of archaeological elasmobranchs from Clupper site in Florida Keys, along with associated .mgf files of selected modern reference taxa.
DOI: 10.6084/m9.figshare.689887.v12
title: H7N9 influenza cases line listing

description: Data are aggregated from FluTrackers.com, CDC, WHO, HealthMap, and local Chinese news reports. The authors cannot guarantee that the data are correct. Patients' sex, age, province, and case report date were used as unique identifiers when combining data. <strong>Data are current as of: May 14, 2012, 2:00 pm ET. </strong> <strong></strong>Note: Some dates were modified on April 29 to match WHO line listing (see reference below). New versions will be updated as additional data become available.
DOI: 10.17632/36c3jrdpbs
title: Chinese Health and Nutrition Survey

description: The China Health and Nutrition Survey (CHNS) started in the year 1989. The survey had the goal of creating a multilevel method of data collection from both individual and Chinese households. This collecting method had the aim of understanding all sorts of economic and social changes affecting nutrition and health outcomes in China. Though the survey started in 1989, it covers up to the year 2015. In this survey in-depth study and collection of new household formation and community data, was made. CHNS includes data on a total of three autonomous (Beijing, Chongqing, and Shanghai) cities and twelve provinces (Jiangsu, Liaoning, Guangxi, Guizhou, Heilongjiang, Henan, Hubei, Hunan, Shaanxi, Shandong, Yunnan, and Zhejiang). The in-depth sampling measure of this survey allowed for the construction of multiple urbanicity measures. These measures were used and studied in multiple types of research either jointly or separately. The remaining of the data could be obtained on demand from its official website : https://www.cpc.unc.edu/projects/china Please use the following acknowledgment in all publications resulting from use of the China Health and Nutrition Survey data: This research uses data from China Health and Nutrition Survey (CHNS). We thank the National Institute for Nutrition and Health, China Center for Disease Control and Prevention, Carolina Population Center (P2C HD050924, T32 HD007168), the University of North Carolina at Chapel Hill, the NIH (R01-HD30880, DK056350, R24 HD050924, and R01-HD38700) and the NIH Fogarty International Center (D43 TW009077, D43 TW007709) for financial support for the CHNS data collection and analysis files from 1989 to 2015 and future surveys, and the China-Japan Friendship Hospital, Ministry of Health for support for CHNS 2009, Chinese National Human Genome Center at Shanghai since 2009, and Beijing Municipal Center for Disease Prevention and Control since 2011.
DOI: 10.17632/f7796b2f8w
title: Average AWARE Characterization factors for water footprinting of non-marginal water uses

description: Non-marginal (average) AWARE CFs and WSI CFs: We provide a shapefile, CSV file and KML file of the average AWARE characterization factors (CFs) based on the marginal AWARE CFs from Boulay et al. (2018). We also provide it together with average WSI factors from Pfister and Bayer (2014), since based on the UNEP SETAC recommendation, AWARE should be used together with an alternative scarcity method to test sensitivities (Jolliet et al. 2018). The XLS version of the average AWARE CFs is available from the original publication: Pfister S, Scherer L, Buxmann K (2020) Water scarcity footprint of hydropower based on a seasonal approach - Global assessment with sensitivities of model assumptions tested on specific cases. Science of The Total Environment. https://doi.org/10.1016/j.scitotenv.2020.138188 DATA structure: The CSV files lists CFs for each month (01 to 12) and each methods: AWARE_01 stands for original marginal AWARE CFs of January, AWARE_a_01 represents the newly calculated average AWARE CFs for January, WSI_01 are the marginal WSI CFs for January and WSI_AVG_01 the average WSI CFs for January. The CSV file can be linked to WaterGAP watersheds based on the "BAS34S_ID" . The WaterGAP shapefile is e.g. available at http://www.wulca-waterlca.org/aware.html. The Shapefile and KML file follows the same order but are already linked to the watershed shapefile.
DOI: 10.17632/kvbgzr6dn8
title: Building and Neighborhood Data Considering Energy in Dublin, Ireland

description: Central to our investigation is the Building Energy Rating (BER) dataset of Ireland, sourced from GeoDirectory data. This dataset provides a foundational resource, encompassing a comprehensive range of building-scale parameters such as detailed addresses, geocode data (latitude and longitude), area, height, number of floors, roof type, construction age, radon emission, HVAC system details, and bedroom and bathroom counts.
To enrich this dataset, we incorporated additional features from the Digital Landscape Models (DLM) Core Data from Tailte Éireann Surveying (PRIME2 Dataset). These enhancements include metrics such as nearest neighbor buildings, the density of the built environment surrounding each building, and district attributes like the ratio of green area to non-green area in the urban vicinity.
DOI: 10.6084/m9.figshare.5277727.v2
title: Tables of human adipose tissue cell type-specific genes

description: The data set includes:1) "Celltype_enriched.txt" files separated by ";" that contain genes significantly enriched in one cell type compared to other three analyzed hWAT cell types according to the analysis described in R markdown file:http://figshare.com/s/509ea9441af442a735acAdjusted p-value &lt;0.05 for all pairwise comparisons, moderated F-statistics p-value &lt;0.05 (from R package/bioconductor package Limma).<br>2) "Celltype_enriched_collected.txt" files separated by ";". These files contain tables that include mean expression of the gene in a fraction where it is enriched, log fold change (logFC) and adjusted P values (adj.P.val) compared to each of other fractions. Minimal logFC and maximal adj.P.Val against other fractions are included as separate columns to enable easy sorting of the data in search for best expressed, best enriched or most specific genes. <br>3) R-code used to generate "Celltype_enriched_collected.txt" tables is provided.<br>4) In addition, a table with 100 highest-ranked genes from each fraction (based on highest logFC_min and lowest adj.P.val_max) is also included ("Selected_enriched_genes_all_fractions" - separated by tab).
DOI: 10.17632/3pjs44k794
title: Data for: Digitization in wood supply – a review on how Industry 4.0 will change the forest value chain

description: A business process map, visualizing the wood supply chain from the tree to the mill. The process map visualizes process steps and information flows within the supply chain and outlines the opportunities of Industry 4.0 enabling the interconnection of process steps along the value chain with close to unlimited information flow and allocation in an internet of trees and services.
DOI: 10.6084/m9.figshare.28987073.v1
title: data1

description: <b>A LASSO Regression-Driven Predictive Nomogram for Liver Cirrhosis Risk in Patients with Chronic Hepatitis B​</b>
DOI: 10.17632/bdydt4v6w8
title: Supplemental Materials for Fiorillo et al. Efficacy And Safety Of Apremilast In Pediatric Patients With Moderate-To-Severe Plaque Psoriasis: 16-Week Results From SPROUT, A Randomized Controlled Trial

description: Mendeley Supplemental Figures for Loretta Fiorillo et al. Efficacy And Safety Of Apremilast In Pediatric Patients With Moderate-To-Severe Plaque Psoriasis: 16-Week Results From SPROUT, A Randomized Controlled Trial
DOI: 10.6084/m9.figshare.674588.v1
title: Home Life: Factors structuring the bacterial diversity found within and between homes (16S rRNA sequence data and metadata)

description: These are the deposited 16S rRNA gene sequences that go with the publication, "Home Life: Factors structuring the bacterial diversity found within and between homes".
DOI: 10.6084/m9.figshare.9752972.v1
title: AsPC-1 NMR data

description: Raw Data for AsPC-1 cell line for <b>Influence of Drying Method on NMR-Based Metabolic Profiling of Human Cell Lines</b> project.
DOI: 10.17632/7k72mnpfv5
title: Satellite Deep Fakes

description: Deep fakes have been detected in satellite images.
DOI: 10.17632/8ckc3dfb2v
title: Papiliotrema terrestris strain PT22AV Genome Sequence

description: This dataset contains the genome sequence and annotation of Papiliotrema terrestris strain PT22AV. This dataset is associated with a publication named "A pipeline to predict the biosafety profile of putative biocontrol yeasts: Papiliotrema terrestris strain PT22AV as a case study".
DOI: 10.17632/fwzpywbhgw
title: GTI Global Public Procurement Dataset (GPPD) 1/2

description: The data introduces a global public procurement procedures database. Using various web scraping methods, we collected and harmonized public procurement procedures from 42 countries between 2006-2021. The year ranges vary by country depending on data availability from the collected sources. Due to the diversity of data publishing formats in each country, we standardized the published information to fit a common data standard. For each country, key information regarding the main buyers and suppliers, organization’s geolocation information (such as NUTS codes when available), product information (CPV 2008 codes when available), price information (in local currencies and also adjusted based on the purchasing power parity), details of the contracting process (e.g. contract award date or the procedure followed). The database is best described as a contract-level dataset where specific filters are added to reduce the dataset to the successfully awarded contracts if needed. We also add several corruption risk indicators and a composite corruption risk index for each contract which allows for an objective assessment and comparison across time, organizations or countries. The data can be reused to answer various research questions dealing with public procurement structural spending. The availability of organizational identification codes or by matching based on the organization's name allows to connect the data to company registries to study broader topics such as ownership networks.
DOI: 10.17632/g547vfzybp
title: GHLY_Race_Prediction

description: This is the replication folder for the paper "Regulatory Arbitrage or Random Errors? Implications of Race Prediction Algorithms in Fair Lending Analysis".
DOI: 10.17632/zpbwjk38pt
title: Annotated Mammography Dataset for Breast Cancer Detection

description: This dataset is derived from The mini-MIAS database of mammograms [J. Suckling et al., 1994], a well-known collection of digitized mammographic images. The original dataset, available at MIAS Database (http://peipa.essex.ac.uk/info/mias.html), consists of 322 images.

For this dataset, the images were manually annotated using Roboflow, with two annotation classes:
1) BC (Breast Cancer)
2) Inconclusive

i) Preprocessing & Augmentation:
To standardize the dataset, images were preprocessed using auto-orientation and resized to 640×640 pixels. Augmentation was applied to generate three outputs per training example, with transformations including:
1) Horizontal flip
2) Exposure adjustment (-15% to +15%)

ii) Dataset Split
The final dataset consists of:
917 images for training
10 images for validation
5 images for testing

iii) Formats & Compatibility
The dataset is available in four formats to support 23 different models:
1) JSON
2) XML
3) TXT
4) CSV

Disclaimer
The annotations in this dataset were made solely based on visual cues and were not conducted by medical professionals. As a result, they should not be considered clinically accurate or used for medical diagnosis. This dataset is intended for research and educational purposes only.

Reference: J Suckling et al (1994): The Mammographic Image Analysis Society Digital Mammogram Database Exerpta Medica. International Congress Series 1069 pp375-378.
DOI: 10.6084/m9.figshare.12416573.v1
title: Raw Avibase output and Supplementary Tables from Towards reconciliation of the four world bird lists: hotspots of disagreement in taxonomy of raptors

description: Avibase output, names with multiple concepts, concepts with multiple names, omitted genera, disagreements per family, disagreements per genus, countries
DOI: 10.17632/73cmrfk8x9
title: iCHO2441 genome-scale metabolic model

description: Creation of updated CHO Genome-scale metabolic model, iCHO2441 

iCHO1766 was obtained from the Bigg models database (King et al., 2016), while iCHO2291 was obtained via the BioModels database (Malik-Sheriff et al., 2020). The expanded iCHO2441 GeM was constructed by coupling the secretory machinery presented within the iCHO2048 (Gutierrez et al., 2020a) to the recently published updated iCHO2291 (Yeo et al., 2020a). This was achieved by adapting the Jupyter Notebooks developed by Gutierrez et al. (2020) to use the updated iCHO2291 as a base model to which secretory reactions may be added. In brief, information of each secreted product including amino acid composition, presence of a signal peptide, number of disulphide bonds, number of core N-linked glycans, and molecular weight were fed to the notebook and used to add the appropriate secretory pathway reactions to the model (Table S1). For intracellular flux prediction, a custom model was generated for each secreted product using product composition data. For auxotrophy and gene essentiality predictions, a generic IgG structure was used to add secretory reactions to the model (Table S1). As per the recommendation by Hart et al., genes with transformed values less than -3 were classed as ‘not expressed/ negative confidence’ (class -1). Genes with transformed values between -3 and -1.5 were classed as ‘low confidence expressed’ (class 1). Genes with transformed values between -1.5 and 0 were classed as ‘medium confidence expressed’ (class 2). Genes with transformed values greater than 0 were classed as ‘expressed/high confidence’ (class 3). These classifications were mapped to reactions within iCHO2441 using the method described above, where unclassified reactions were given a class of 0. Reconstructions were generated per experiment using the CORDA function for python which took iCHO2441 constrained with experimental uptakes (Table S2) as a base model and the gene confidence classifications as inputs. An in-depth rationale behind this novel approach is presented in supplementary material 1.
DOI: 10.17632/b4xj8wmpv9
title: Safety, tolerability, and efficacy of a novel topical isotretinoin formulation for the treatment of X-linked or lamellar congenital ichthyosis: Results from a Phase 2a proof-of-concept study

description: In this 2-part, phase 2a, double-blind study, patients ≥12 years with 2 comparable contralateral lesional areas with identical baseline Investigator Global Assessment (IGA) ≥3 scores were randomized 1:1 to PAT-001 0.1% or 0.2%. The treatment areas received PAT-001 (0.1% or 0.2%) or vehicle twice daily for 8 weeks in Part 1, and then both treatment areas received PAT-001 0.1% or 0.2% BID for 4 weeks in Part 2. Safety evaluations included adverse event (AE) monitoring and laboratory tests; efficacy outcomes included IGA scores and clinical signs.
Among enrolled patients (PAT-001 0.1% [n = 10] and 0.2% [n = 9]), 14 experienced an AE. Most AEs were mild; 8 patients reported AEs that were possibly/probably/definitely treatment related; 7 discontinued treatment. There were no clinically significant changes from baseline in laboratory values and systemic isotretinoin/tretinoin concentrations remained at baseline levels. 
In Part 1, PAT-001 0.1% led to more ≥1 and ≥2 grade IGA reductions vs vehicle (100% vs 66.7%/66.7% vs 33.3%, respectively). PAT-001 0.2% resulted in more IGA reductions of 1 grade vs vehicle (50% vs 25%). Both PAT-001 concentrations improved scaling vs baseline at Days 57 and 84 (100%/75% vs 100%/80%, respectively) for continued active and vehicle/active treatment areas. In Part 2, IGA reductions in both treatment areas were observed in ≥80% of patients. Scaling in all patients for active vs vehicle treatment areas was clear, almost clear, or mild for 0.1% and 0.2% groups (100% vs 55.6%/100% vs 87.5%, respectively).
DOI: 10.6084/m9.figshare.22661596.v1
title: Liver_Control_TCDD_GSE148339.cloupe (snRNAseq Loupe Browser file)

description: Loupe Browser file, Liver_Control_TCDD_GSE148339, with single nulceus-based gene expression for control and subchronic TCDD-exposed mouse liver. See publication in Toxicology and Applied Pharmacology (2023): TCDD dysregulation of lncRNA expression, liver zonation and intercellular communication across the liver lobule.
DOI: 10.17632/cdxvnh4ypr
title: Performance assessment of double corrugated tubes in a tube-in-shell heat exchanger

description: The CFD modeling study was conducted in order to asses the performance of double corrugated tubes in a tube-in-shell heat exchanger. The study was carried out using COMSOL Multiphysics Conjugated Heat transfer Module with k-epsilon turbulence model. The related raw data is provided in .txt file format. The data is sorted according to the type of analyzed geometry. The input parameters and the numerical results are clearly described in the data sets in folder "HeatTransfer". The data sets in folder "Flow" contains simulation results on the fluid flow velocity and pressure drop across the analyzed heat exchangers at given coordinates. The CFD results were analyzed using MATLAB software. The epsilon-NTU method was used in order to evaluate the performance of heat exchnager equipped with double corrugated tubes and compare to that of one equipped with straight tubes.
DOI: 10.17632/dmhnr29ws2
title: Gamma-Enhancing Neurofeedback at Oz-EEG Channel Toward Visual Feature Binding and Fluid Intelligence Enhancement

description: Study aim: To study Gamma-enhancing neurofeedback learning process and evaluate its efficacy on visual feature binding and fluid intelligence Sample size: 18 healthy female students (mean age: 24.24 ± 1.94 years) Dataset: ----------- 1- Demographics: 18 subjects, Age, BMI, Weight, Height, Handedness, GPA 2- IQ measure: 18 subjects, Pretest and posttest sessions 3- Visual feature binding measure: 18 subjects, Pretest and posttest sessions, Response time and Error rate 4- 4 activity baseline EEG: 18 subjects, Pretest and posttest sessions, Tasks: Eyes open, Eyes closed, Auditory sensory attentiveness, Cognitive effort 5- Neurofeedback training EEG: 8 subjects, 8 training sessions, Eyes closed baseline EEG recorded before and after training in each session, EEG recorded during training in each session
DOI: 10.17632/44mm8ydj5s
title: Егор Силенок_выборка и анали

description: Выборка для анализа в диссертационном исследовании
DOI: 10.17632/4rjdzrfd3r
title: Data for Xu et al. "A Cross-scale Characterization of Porous Rocks Altered by Flow and Dissolution"

description: Video data for 3D wormholes and subsamples.
DOI: 10.17632/frdkxb3649
title: RNASeq data Autophagy genes MCF7 Zeb1

description: RNAseq data for autophagy-related genes expression obtained for MCF7 cell line with/without tetracycline-induced Zeb1 expression. 
Value_1 - no Zeb1 expression
Value_2 - Zeb1 expression
DOI: 10.17632/27wvzpyf5h
title: raw image data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_Figure 1-4 part_1

description: raw image data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_Figure 1-3 part_1
DOI: 10.15468/dl.zcecrq
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salsola kali L.",
 "Country is Morocco"
 ]
}

 The dataset includes 45 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012941-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/59yf6zfzvt
title: SI Global Networks Data Availability

description: Data Availability
DOI: 10.17632/fnt6jtc5np
title: Kinematic and looking behaviour features of a movement imitation task

description: All features are continuous, raw (non-normalised). Missing values and outliers are replaced with class means. # of classes: 2 (1 – autistic / 0 – non-autistic) # of data samples: 44 (22-autistic / 22-non autistic) # of features: Kinematic dataset: 120 per instruction block, Looking behaviour dataset: 48 per instruction block. Feature descriptions are given in a title row in the files and fuller descriptions are given in the paper and it’s Supplementary Methods.