cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25272928.v1
title: Supplementary Material for: Associations of depressive and anxiety disorders with pulmonary disorders in the community – the PneumoLaus and PsyCoLaus studies

description: Introduction: Mental health disorders figure among the many comorbidities of obstructive respiratory diseases. The multisystemic characteristics of chronic respiratory disease and its impact on quality of life could affect depressive and/or anxiety disorders. We aimed to evaluate the association of spirometric indices, ventilatory disorders and self-reported respiratory diseases with psychiatric disorders considering potential confounders.

Methods: We analysed data from CoLaus|PsyCoLaus, a Swiss population-based cohort study, consisting of 2’774 participants (56% women; mean age: 62.3 (SD=±9.9) years) who performed spirometry and completed semi-structured psychiatric interviews. We defined ventilatory disorders using GLI-2012 references. Major depressive episode (MDE) and anxiety disorders were defined using the DSM-IV (Diagnostic and Statistical Manual).

Results: 630 subjects (22.7%) presented a recent MDE. Reversible obstructive ventilatory disorders were associated with recent MDE (OR=1.94, 95% CI95 1.10-3.43) and recent anxiety disorders (2.21 [1.16-4.22]) only in unadjusted model. Self-reported COPD and asthma were associated with MDE with ORs of 2.49 (95%CI, 1.19-5.27) and 1.56 (95% CI, 1.04-2.35) after adjustment, respectively. Possible restrictive ventilatory impairment was positively associated with recent anxiety disorders (OR=2.46, 1.10-5.51). Z-scores of FEV1, FVC and maximum mid expiratory flow (MMEF) were not associated with psychiatric disorders. There was no association between ventilatory disorders and MDE in adjusted models. 

Conclusions: In this cross-sectional population-based study, the association between respiratory disorders and depressive disorders was observed for self-reported COPD and asthma, but not with objective diagnoses based on spirometry. Lung volumes are not associated with psychiatric disorders. Further prospective studies will be necessary to understand the significance of the association.
DOI: 10.20381/ruor-22619
title: KP Tours (ATI records)

description: In October 2013, Correctional Service Canada (CSC) decommissioned Kingston Penitentiary (KP) in Kingston, Ontario. To commemorate KP’s closing, CSC organized facility tours for staff members and their families, journalists, and the public. Based on an analysis of Access to Information disclosures informed by Goffman’s (1959) conceptualization of impression management, we examine CSC’s backstage work integral to the organization of KP tours. Our analysis reveals how CSC sought to elevate positive stories of penitentiary staff, as well as the organization’s contribution to public safety and the local community as a means of neutralizing opposition to the closure of the facility expressed by stakeholders. We conclude by discussing the implications of carceral symbolism and the form it takes when punishment memorialization is driven by the imperatives of ‘correctional’ agencies.
DOI: 10.20381/ruor-21037
title: Getting "Beyond the Fence" (ATI reference 5)

description: In 2015, Correctional Service Canada launched a virtual tour promising a 'first-hand' and 'realistic' depiction of life and work inside a federal penitentiary titled Beyond the Fence. Based on an analysis of Access to Information disclosures, we examine the backstage activities that went into the production, marketing, and evaluation of the tour. Drawing on Goffman's (1959) notions of frontstage and backstage, as well as MacCannell's (1973) idea of staged authenticity, we reveal how representations of incarceration and punishment were sanitized to build legitimacy and consent for carceralism. We conclude by reflecting on the need to study the content and form of state representations of penality, and the challenges that representations pose to working toward a future without carceral institutions.
DOI: 10.6084/m9.figshare.15085951
title: Additional file 11 of A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses

description: Additional file 11: Table S8. The list of 134 rapidly expanded gene families and 529 contracted gene families.
DOI: 10.6084/m9.figshare.15085951.v1
title: Additional file 11 of A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses

description: Additional file 11: Table S8. The list of 134 rapidly expanded gene families and 529 contracted gene families.
DOI: 10.6084/m9.figshare.15085954
title: Additional file 12 of A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses

description: Additional file 12: Table S9. Functional annotation of 39 genes in Muscovy duck.
DOI: 10.6084/m9.figshare.15085954.v1
title: Additional file 12 of A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses

description: Additional file 12: Table S9. Functional annotation of 39 genes in Muscovy duck.
DOI: 10.6084/m9.figshare.15085957
title: Additional file 13 of A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses

description: Additional file 13: Table S10. 104 positively selected genes (PSGs) in Muscovy duck.
DOI: 10.6084/m9.figshare.15085957.v1
title: Additional file 13 of A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses

description: Additional file 13: Table S10. 104 positively selected genes (PSGs) in Muscovy duck.
DOI: 10.6084/m9.figshare.15085963
title: Additional file 15 of A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses

description: Additional file 15: Table S12.  Genes involved in the innate immune response pathway.
DOI: 10.6084/m9.figshare.15085963.v1
title: Additional file 15 of A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses

description: Additional file 15: Table S12.  Genes involved in the innate immune response pathway.
DOI: 10.20381/ruor-22599
title: KP Tours (ATI records)

description: In October 2013, Correctional Service Canada (CSC) decommissioned Kingston Penitentiary (KP) in Kingston, Ontario. To commemorate KP’s closing, CSC organized facility tours for staff members and their families, journalists, and the public. Based on an analysis of Access to Information disclosures informed by Goffman’s (1959) conceptualization of impression management, we examine CSC’s backstage work integral to the organization of KP tours. Our analysis reveals how CSC sought to elevate positive stories of penitentiary staff, as well as the organization’s contribution to public safety and the local community as a means of neutralizing opposition to the closure of the facility expressed by stakeholders. We conclude by discussing the implications of carceral symbolism and the form it takes when punishment memorialization is driven by the imperatives of ‘correctional’ agencies.
DOI: 10.20381/ruor-21078
title: Getting "Beyond the Fence" (ATI reference 100)

description: In 2015, Correctional Service Canada launched a virtual tour promising a 'first-hand' and 'realistic' depiction of life and work inside a federal penitentiary titled Beyond the Fence. Based on an analysis of Access to Information disclosures, we examine the backstage activities that went into the production, marketing, and evaluation of the tour. Drawing on Goffman's (1959) notions of frontstage and backstage, as well as MacCannell's (1973) idea of staged authenticity, we reveal how representations of incarceration and punishment were sanitized to build legitimacy and consent for carceralism. We conclude by reflecting on the need to study the content and form of state representations of penality, and the challenges that representations pose to working toward a future without carceral institutions.
DOI: 10.6084/m9.figshare.1454520
title: Exosomes derived from human mesenchymal stem cells confer drug resistance in gastric cancer

description: Mesenchymal stem cells (MSCs) play an important role in chemoresistance. Exosomes have been reported to modify cellular phenotype and function by mediating cell-cell communication. In this study, we aimed to investigate whether exosomes derived from MSCs (MSC-exosomes) are involved in mediating the resistance to chemotherapy in gastric cancer and to explore the underlying molecular mechanism. We found that MSC-exosomes significantly induced the resistance of gastric cancer cells to 5-fluorouracil both in vivo and ex vivo. MSC-exosomes antagonized 5-fluorouracil-induced apoptosis and enhanced the expression of multi-drug resistance associated proteins, including MDR, MRP and LRP. Mechanistically, MSC-exosomes triggered the activation of calcium/calmodulin-dependent protein kinases (CaM-Ks) and Raf/MEK/ERK kinase cascade in gastric cancer cells. Blocking the CaM-Ks/Raf/MEK/ERK pathway inhibited the promoting role of MSC-exosomes in chemoresistance. Collectively, MSC-exosomes could induce drug resistance in gastric cancer cells by activating CaM-Ks/Raf/MEK/ERK pathway. Our findings suggest that MSC-exosomes have profound effects on modifying gastric cancer cells in the development of drug resistance. Targeting the interaction between MSC-exosomes and cancer cells may help improve the efficacy of chemotherapy in gastric cancer.
DOI: 10.6084/m9.figshare.15086002
title: Additional file 7 of A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses

description: Additional file 7: Table S5. OrthoFinder gene counts per orthogroup.
DOI: 10.6084/m9.figshare.15086002.v1
title: Additional file 7 of A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses

description: Additional file 7: Table S5. OrthoFinder gene counts per orthogroup.
DOI: 10.20381/ruor-22915
title: RecoverNow: A mobile tablet-based therapy platform for early stroke rehabilitation - raw data

description: Stroke survivors frequently experience a range of post-stroke deficits. Specialized stroke rehabilitation improves recovery, especially if it is started early post-stroke. However, resource limitations often preclude early rehabilitation. Mobile technologies may provide a platform for stroke survivors to begin recovery when they might not be able to otherwise. The study objective was to demonstrate the feasibility of RecoverNow, a tablet-based stroke recovery platform aimed at delivering speech and cognitive therapy. We recruited a convenience sample of 30 acute stroke patients to use RecoverNow for up to 3 months. Allied health professionals assigned specific applications based on standard of care assessments. Participants were encouraged to take home the RecoverNow tablets upon discharge from acute care. The study team contacted participants to return for a follow-up interview 3 months after enrollment. The primary outcome of interest was feasibility, defined using 5 facets: recruitment rate, adherence rate, retention rate, the proportion of successful follow-up interventions, and protocol deviations. We tracked barriers to tablet-based care as a secondary outcome. We successfully recruited 30 of 62 eligible patients in 15 weeks (48% recruitment rate). Participants were non-adherent to tablet-based therapy inside and outside of acute care, using RecoverNow for a median of 12 minutes a day. Retention was high with 23 of 30 patients participating in follow-up interviews (77% retention rate) and all but 3 of the 23 interviews (87%) were successfully completed. Only 2 major protocol deviations occurred: one enrollment failure and one therapy protocol violation. Barriers to tablet-based care were frequently encountered by study participants with many expressing the assigned applications were either too easy or too difficult. Acute stroke patients are interested in attempting tablet-based stroke rehabilitation and are easily recruited early post-stroke. However, tablet-based therapy may be challenging due to patient, device and system-related barriers. Reducing the frequency of common barriers will be essential to keeping patients engaged in tablet-based therapy.
DOI: 10.6084/m9.figshare.11415999
title: MOESM1 of MicroRNA-mRNA expression profiles and their potential role in cadmium stress response in Brassica napus

description: Additional file 1: Table S1. The primer pairs for quantitative real-time RT-PCR (qRT-PCR) validation. Table S2. The statistics of sRNA-seq reads and mapped reads in shoot and root of oilseed rape seedlings under control condition and Cd stress. Table S3. The sequences of newly predicted miRNAs identified in 12 small RNA libraries. Table S4. The statistics of mRNA-seq reads and mapped reads in shoot (S1-S3) and root (R1-R3) tissues of oilseed rape seedlings under control condition (C) and Cd stress (T). Table S5. The significantly enriched GO terms during the cadmium response process in root and shoot of B. napus. Table S6. The differentially expressed genes related to the process of Cd transport in root and shoot of rapeseed seedling response to Cd treatment. Table S7. The differentially expressed genes related to the process of transcription regulation in root and shoot of rapeseed seedling response to Cd treatment. Table S8. The differentially expressed genes related to the process of secondary metabolism in root and shoot of rapeseed seedling response to Cd treatment. Table S9. The differentially expressed genes involved in Cd-induced antioxidant response in root and shoot of rapeseed seedling. Table S10. The differentially expressed genes involved in chlorophyll synthesis and photosynthesis in root and shoot of rapeseed seedling for Cd response. Table S11. The list of mRNA targets predicted for differentially expressed miRNAs in root and shoot.
DOI: 10.6084/m9.figshare.11415999.v1
title: MOESM1 of MicroRNA-mRNA expression profiles and their potential role in cadmium stress response in Brassica napus

description: Additional file 1: Table S1. The primer pairs for quantitative real-time RT-PCR (qRT-PCR) validation. Table S2. The statistics of sRNA-seq reads and mapped reads in shoot and root of oilseed rape seedlings under control condition and Cd stress. Table S3. The sequences of newly predicted miRNAs identified in 12 small RNA libraries. Table S4. The statistics of mRNA-seq reads and mapped reads in shoot (S1-S3) and root (R1-R3) tissues of oilseed rape seedlings under control condition (C) and Cd stress (T). Table S5. The significantly enriched GO terms during the cadmium response process in root and shoot of B. napus. Table S6. The differentially expressed genes related to the process of Cd transport in root and shoot of rapeseed seedling response to Cd treatment. Table S7. The differentially expressed genes related to the process of transcription regulation in root and shoot of rapeseed seedling response to Cd treatment. Table S8. The differentially expressed genes related to the process of secondary metabolism in root and shoot of rapeseed seedling response to Cd treatment. Table S9. The differentially expressed genes involved in Cd-induced antioxidant response in root and shoot of rapeseed seedling. Table S10. The differentially expressed genes involved in chlorophyll synthesis and photosynthesis in root and shoot of rapeseed seedling for Cd response. Table S11. The list of mRNA targets predicted for differentially expressed miRNAs in root and shoot.
DOI: 10.6084/m9.figshare.15086012
title: Additional file 4 of Identification and validation of a novel locus, Qpm-3BL, for adult plant resistance to powdery mildew in wheat using multilocus GWAS

description: Additional file 4: QTNs for adult plant resistance to powdery mildew in wheat via best linear unbiased prediction (BLUP) values using multilocus GWAS.
DOI: 10.6084/m9.figshare.15086015
title: Additional file 5 of Identification and validation of a novel locus, Qpm-3BL, for adult plant resistance to powdery mildew in wheat using multilocus GWAS

description: Additional file 5: Genotypes of the kompetitive allele-specific PCR (KASP) marker closely linked with Qpm-3BL in 155 F2individuals.
DOI: 10.6084/m9.figshare.15086015.v1
title: Additional file 5 of Identification and validation of a novel locus, Qpm-3BL, for adult plant resistance to powdery mildew in wheat using multilocus GWAS

description: Additional file 5: Genotypes of the kompetitive allele-specific PCR (KASP) marker closely linked with Qpm-3BL in 155 F2individuals.
DOI: 10.6084/m9.figshare.15086012.v1
title: Additional file 4 of Identification and validation of a novel locus, Qpm-3BL, for adult plant resistance to powdery mildew in wheat using multilocus GWAS

description: Additional file 4: QTNs for adult plant resistance to powdery mildew in wheat via best linear unbiased prediction (BLUP) values using multilocus GWAS.
DOI: 10.6084/m9.figshare.15086009
title: Additional file 3 of Identification and validation of a novel locus, Qpm-3BL, for adult plant resistance to powdery mildew in wheat using multilocus GWAS

description: Additional file 3: Population structures of 637 wheat accessions in Henan Province.
DOI: 10.6084/m9.figshare.15086009.v1
title: Additional file 3 of Identification and validation of a novel locus, Qpm-3BL, for adult plant resistance to powdery mildew in wheat using multilocus GWAS

description: Additional file 3: Population structures of 637 wheat accessions in Henan Province.
DOI: 10.6084/m9.figshare.24523207
title: <b>Nuciferine protects bovine hepatocytes against free fatty acid-induced oxidative damage by activating </b><b>transcription factor EB/peroxisome proliferator-activated receptor γ coactivator 1 </b><b>alpha</b><b> pathway</b>

description: <b>Supplemental Figure S1.</b> The cell viability of bovine hepatocytes.<b>Supplemental Figure S2</b><b>.</b> Schematic of the cell culture and treatment.<b>Supplemental Figure S3.</b> Ct values of β-actin (<i>ACTB</i>) and glyceraldehyde-3-phosphate dehydrogenase (<i>GAPDH</i>).<b>Supplemental Table S1</b><b>.</b> The primer sequences (For, forward; Rev, reverse).<b>Supplemental Table S2</b><b>.</b> The arithmetic means of technical replicates in different concentrations of FFA treatment (0, 0.3, 0.6 or 1.2 m<i>Μ</i>).<b>Supplemental Table S3</b><b>.</b> The arithmetic means of technical replicates in different concentrations of Nuc treatment (0, 25, 50, or 100 μ<i>Μ</i>).<b>Supplemental Table S4</b><b>.</b> The arithmetic means of technical replicates in 100 μ<i>M</i> Nuc treatment for different time points (0, 6, 12 or 24 h).
DOI: 10.6084/m9.figshare.25047509
title: Data set for Wide-field Fourier magnetic imaging with electron spins in diamond：research data

description: Purpose of the datasetThis is an experimental dataset in support of the study titled "Wide-field Fourier magnetic imaging with electron spins in diamond". This is an experimental dataset to support the study entitled "Wide-field Fourier magnetic imaging with electron spins in diamond". For the images that appear in the article, the original experimental data can be obtained from this dataset. The data for each image is saved in a separate folder in .mat format, and the data analysis code is provided in the dataset in .m file format. To obtain the images in the article, the .m file can be opened with matlab software and run directly.AbstractWide-field magnetic imaging based on nitrogen-vacancy (NV) centers in diamond has been shown the applicability in material and biological science. However, the spatial resolution is limited by the optical diffraction limit (&gt;200 nm) due to the optical real-space localization and readout of NV centers. Here, we report the wide-field Fourier magnetic imaging technique to improve spatial resolution beyond the optical diffraction limit while maintaining the large field of view. Our method relies on widefield pulsed magnetic field gradient encoding of NV spins and Fourier transform under pixel-dependent spatial filters. We have improved spatial resolution by a factor of 20 compared to the optical resolution and demonstrated the wide-field super-resolution magnetic imaging of a gradient magnetic field. This technique paves a way for efficient magnetic imaging of large-scale fine structures at the nanoscale.
DOI: 10.6084/m9.figshare.4600285
title: Antihyperlipidaemic effect of triterpenic acid-enriched fraction from <i>Cyclocarya paliurus</i> leaves in hyperlipidaemic rats

description: <b>Context:</b><i>Cyclocarya paliurus</i> (Batal) Iljinskaja (Juglandaceae) is an edible and medicinal plant; the leaves are used in Chinese folkloric medicine to treat dyslipidaemia and diabetes. <b>Objective:</b> This study evaluates the antihyperlipidaemic potential of the triterpenic acid-enriched fraction (TAE) from <i>C. paliurus</i> and the underlying mechanism. <b>Materials and methods:</b> The hyperlipidaemic rats were induced by high fat diet for 6 weeks. After oral administration of TAE (200 and 400 mg/kg), the neutral fraction (150 and 300 mg/kg) and statin (4 mg/kg) to the hyperlipidaemic rats for 4 weeks, lipid profile and apolipoprotein (apoB48) level in plasma, and the expression levels of apoB48, microsomal triglyceride transfer protein (MTP), phosphorylation of mitogen-activated protein kinase (MAPK) and tumour necrosis factor α (TNF-α) in intestine were examined. The main constituents in the TAE were identified by HPLC-MS. <b>Results:</b> TAE administration (400 mg/kg) decreased the levels of atherogenic lipids in serum and liver (<i>p</i> &lt; 0.05) and increased serum high-density lipoprotein cholesterol by 19.7%. Furthermore, TAE treatment (200 and 400 mg/kg) decreased plasma apoB48 level by 15.3 and 19.5%, downregulated intestinal apoB48 and MTP expression levels (<i>p</i> &lt; 0.05), and inhibited TNF-α expression by 36.2 and 56.2% and the phosphorylation level of MAPK by 8.8 and 13.2%, respectively. HPLC analysis revealed the presence of pentacyclic- and tetracyclic-triterpene acids in TAE. <b>Conclusion and discussion:</b> These findings suggested that TAE possessed antihyperlipidaemic activity partially involved in the inhibitory effect on apoB48 overproduction, which may provide evidence about its potential role in ameliorating dyslipidaemia.
DOI: 10.6084/m9.figshare.4600285.v2
title: Antihyperlipidaemic effect of triterpenic acid-enriched fraction from <i>Cyclocarya paliurus</i> leaves in hyperlipidaemic rats

description: <b>Context:</b><i>Cyclocarya paliurus</i> (Batal) Iljinskaja (Juglandaceae) is an edible and medicinal plant; the leaves are used in Chinese folkloric medicine to treat dyslipidaemia and diabetes. <b>Objective:</b> This study evaluates the antihyperlipidaemic potential of the triterpenic acid-enriched fraction (TAE) from <i>C. paliurus</i> and the underlying mechanism. <b>Materials and methods:</b> The hyperlipidaemic rats were induced by high fat diet for 6 weeks. After oral administration of TAE (200 and 400 mg/kg), the neutral fraction (150 and 300 mg/kg) and statin (4 mg/kg) to the hyperlipidaemic rats for 4 weeks, lipid profile and apolipoprotein (apoB48) level in plasma, and the expression levels of apoB48, microsomal triglyceride transfer protein (MTP), phosphorylation of mitogen-activated protein kinase (MAPK) and tumour necrosis factor α (TNF-α) in intestine were examined. The main constituents in the TAE were identified by HPLC-MS. <b>Results:</b> TAE administration (400 mg/kg) decreased the levels of atherogenic lipids in serum and liver (<i>p</i> &lt; 0.05) and increased serum high-density lipoprotein cholesterol by 19.7%. Furthermore, TAE treatment (200 and 400 mg/kg) decreased plasma apoB48 level by 15.3 and 19.5%, downregulated intestinal apoB48 and MTP expression levels (<i>p</i> &lt; 0.05), and inhibited TNF-α expression by 36.2 and 56.2% and the phosphorylation level of MAPK by 8.8 and 13.2%, respectively. HPLC analysis revealed the presence of pentacyclic- and tetracyclic-triterpene acids in TAE. <b>Conclusion and discussion:</b> These findings suggested that TAE possessed antihyperlipidaemic activity partially involved in the inhibitory effect on apoB48 overproduction, which may provide evidence about its potential role in ameliorating dyslipidaemia.