cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.f4v0s
title: Data from: Characterizing aeroallergens by infrared spectroscopy of fungal spores and pollen

description: Background: Fungal spores and plant pollen cause respiratory diseases in
 susceptible individuals, such as asthma, allergic rhinitis and
 hypersensitivity pneumonitis. Aeroallergen monitoring networks are an
 important part of treatment strategies, but unfortunately traditional
 analysis is time consuming and expensive. We have explored the use of
 infrared spectroscopy of pollen and spores for an inexpensive and rapid
 characterization of aeroallergens. Methodology: The study is based on
 measurement of spore and pollen samples by single reflectance attenuated
 total reflectance Fourier transform infrared spectroscopy (SR-ATR FTIR).
 The experimental set includes 71 spore (Basidiomycota) and 121 pollen
 (Pinales, Fagales and Poales) samples. Along with fresh basidiospores, the
 study has been conducted on the archived samples collected within the last
 50 years. Results: The spectroscopic-based methodology enables clear
 spectral differentiation between pollen and spores, as well as the
 separation of confamiliar and congeneric species. In addition, the
 analysis of the scattering signals inherent in the infrared spectra
 indicates that the FTIR methodology offers indirect estimation of
 morphology of pollen and spores. The analysis of fresh and archived spores
 shows that chemical composition of spores is well preserved even after
 decades of storage, including the characteristic taxonomy-related signals.
 Therefore, biochemical analysis of fungal spores by FTIR could provide
 economical, reliable and timely methodologies for improving fungal
 taxonomy, as well as for fungal identification and monitoring. This proof
 of principle study shows the potential for using FTIR as a rapid tool in
 aeroallergen studies. In addition, the presented method is ready to be
 immediately implemented in biological and ecological studies for direct
 measurement of pollen and spores from flowers and sporocarps.
description: ATR list of fresh and
 achived sporesList of fresh and
 archived spores for ATRspectraArchivedSpores.txt
 spectraATR
 list of fresh and archived
 spores.xlsxATR list of Fresh Pollen
 and SporesATR list of Fresh Pollen
 and Spores for ATRspectraFreshPollenSpores.txtATRspectraArchivedSporesASCII file containing absorbance values of 192 FTIR spectra of fresh and archived spores (see list in ATR list of fresh and archived spores); spectral wavenumbers are in Wavenumbers.txtATRspectraFreshPollenSporesASCII file containing absorbance values of 417 FTIR spectra of fresh and archived spores (see list in ATR list of fresh and archived spores); spectral wavenumbers are in Wavenumbers.txtWavenumbersSpectral wavenumbers for files ATRspectraArchivedSpores.txt and ATRspectraFreshPollenSpores.txt
DOI: 10.5061/dryad.d23sd
title: Data from: Human disease hinders anti-poaching efforts in Indian nature reserves

description: Where hunting pressure is high, anti-poaching efforts are often crucial
 for protecting native wildlife populations in nature reserves. However,
 many reserves suffer from inadequate support and provisioning of staff,
 especially in developing nations. In Pakke Tiger Reserve in northeastern
 India, we found that malarial infection is a serious hindrance for
 front-line patrolling staff that limits the time they can spend in the
 field. We assessed the consequences of malaria both for local people and
 park staff in the general region and its indirect effects on wildlife
 protection. To accomplish this we compiled data from annual
 epidemiological records of malaria, the number of malaria cases and
 associated mortality, financial costs, and loss of time spent patrolling.
 Over a 4-year period (2006–2009), the majority (71%) of forest department
 staff in Pakke Tiger Reserve suffered from malaria. Malaria treatments
 cost park managers nearly 3% of their total budget and caused a net loss
 of 44,160 man hours of anti-poaching effort. The government forest and
 health departments involved in the employment and health of park staff
 have separate missions and responsibilities, yet our findings show that a
 multi-disciplinary approach to conservation is essential to avoid overall
 systemic failure.
description: malaria data in the
 general populace from the primary health centreMALARIA REPORT
 2006-09_0001.jpg-004.jpg contains data from the primary health centre at
 Upper-Seijosa from 2006-2009. The file malaria
 malaria_epidemiology_2006_09_all compiled.xls is a compilation of the same
 with rain data that was extracted from Modis and was averaged per month
 across years.malaria.zipfile_for_malaria.docx
DOI: 10.5061/dryad.7986
title: Data from: Comparison of SNPs and microsatellites for fine-scale application of genetic stock identification of Chinook salmon in the Columbia River Basin

description: Genetic stock identification (GSI) is an important tool in fisheries
 management. Microsatellites (µSATs) have been the dominant genetic marker
 for GSI, however increasing availability and numerous advantages of single
 nucleotide polymorphism (SNP) markers make them an appealing alternative.
 We tested performance of 13 µSAT versus 92 SNP loci in a fine-scale
 application of GSI, using a new baseline for Chinook salmon consisting of
 49 collections (n=4014) distributed across the Columbia River Basin. In
 GSI, baseline genotypes for both marker sets were used independently to
 analyze a real fishery mixture (n=2731) representing the total run of
 Chinook salmon passing Bonneville Dam in the Columbia River. Marker sets
 were evaluated using three criteria: 1) ability to differentiate reporting
 groups, 2) proportion of correct assignment in mixture simulation tests
 and baseline leave-one-out analyses, and 3) individual assignment and
 confidence intervals around estimated stock proportions of a real fishery
 mixture. The µSATs outperformed the SNPs in resolving fine-scale
 relationships, but all 105 markers combined provided greatest power for
 GSI. SNPs were ranked by relative information content based on both an
 iterative procedure that optimized correct assignment to the baseline and
 ranking by minor allele frequency. For both methods, we identified a
 subset of the top 50 ranked loci, which were similar in assignment
 accuracy, and both reached maximum available power of the total 92 SNP
 loci (correct assignment=73%). Our estimates indicate that between 100-200
 highly informative SNP loci are required to meet management standards
 (correct assignment&gt;90%) for resolving stocks in finer-scale GSI
 applications.
description: Chinook
 SNP-Baseline_105loci_10-26-09_HessRevisedONCORColumbia River Chinook
 salmon field collections Genotypic data are formatted for the software
 program ONCOR 13 microsatellite loci are listed first Followed by 92 SNP
 loci Columns are genotypes at each locus. "POP" delineates each
 collection/population
DOI: 10.5061/dryad.4635t
title: Data from: Transition in sexual system and sex chromosome evolution in the tadpole shrimp Triops cancriformis

description: Transitions in sexual system and reproductive mode may affect the course
 of sex chromosome evolution, for instance by altering the strength of
 sexually antagonistic selection. However, there have been few studies of
 sex chromosomes in systems where such transitions have been documented.
 The European tadpole shrimp, Triops cancriformis, has undergone a
 transition from dioecy to androdioecy (a sexual system where
 hermaphrodites and males coexist), offering an excellent opportunity to
 test the impact of this transition on the evolution of sex chromosomes. To
 identify sex-linked markers, to understand mechanisms of sex determination
 and to investigate differences between sexual systems, we carried out a
 genome-wide association study using restriction site-associated DNA
 sequencing (RAD-seq) of 47 males, females and hermaphrodites from one
 dioecious and one androdioecious population. We analysed 22.9 Gb of
 paired-end sequences and identified and scored &gt;3000 high coverage
 novel genomic RAD markers. Presence–absence of markers, single-nucleotide
 polymorphism association and read depth identified 52 candidate sex-linked
 markers. We show that sex is genetically determined in T. cancriformis,
 with a ZW system conserved across dioecious and androdioecious populations
 and that hermaphrodites have likely evolved from females. We also show
 that the structure of the sex chromosomes differs strikingly, with a
 larger sex-linked region in the dioecious population compared with the
 androdioecious population.
description: Per individual
 haplotypes for all RAD markersHaplotypes produced by
 Stacks for all assembled RAD markers.Haplotypes_all_RAD_markers.csvPer individual read depth for all RAD markers with greater than or equal to 20x coverageRAW reads for each individual were mapped back to the catalogue of RAD marker consensus sequences using Stampy. SAMtools was then used to generate a pileup from which read depth was extracted. RAD markers with less than 20x coverage were considered absent.Read_depth_all_RAD_markers_greater_than_19x.csvConsensus sequences for all RAD markersFasta file containing consensus sequences for all RAD markers de novo assembled by stacks.consensus_seqs_all_RAD_markers.fa
DOI: 10.82294/dvnvdstor
title: COPUS. Territorio: Amazonas. Sector: Cultura. Año: 2024
title: Dato. Observación estructurada con el protocolo COPUS.

description: Información recopilada durante el año 2024 a partir de observaciones estructuradas realizadas con el protocolo COPUS, dirigidas a educadores artísticos pertenecientes a programas de formación en educación artística y cultural del sector Cultura (educación informal) en el departamento del Amazonas
DOI: 10.5061/dryad.53kh1
title: Data from: A missense mutation in SLC45A2 is associated with albinism in several small long haired dog breeds

description: Homozygosity for a large deletion in the solute carrier family 45, member
 2 (SLC45A2) gene causes oculocutaneous albinism (OCA) in the Doberman
 Pinscher breed. An albino Lhasa Apso did not have this g.27141_31223del
 (CanFam2) deletion in her SLC45A2 sequence. Therefore, SLC45A2 was
 investigated in this female Lhasa Apso to search for other possible
 variants that caused her albinism. The albino Lhasa Apso was homozygous
 for a nonsynonymous substitution in the seventh exon, a c.1478G&gt;A
 base change that resulted in a glycine to aspartic acid substitution
 (p.G493D). This mutation was not found in a wolf, a coyote, or any of the
 15 other Lhasa Apso dogs or 32 other dogs of breeds related to the Lhasa
 Apso. However, an albino Pekingese, 2 albino Pomeranians, and an albino
 mixed breed dog that was small and long haired were also homozygous for
 the 493D allele. The colored puppies of the albino Lhasa Apso and the
 colored dam of the 2 albino Pomeranians were heterozygous for this allele.
 However, an albino Pug was homozygous for the 493G allele and therefore
 although we suggest the 493D allele causes albinism when homozygous in
 several small, long haired dog breeds, it does not explain all albinism in
 dogs. A variant effect prediction for the albino Lhasa Apso confirms that
 p.G493D is a deleterious substitution, and a topology prediction for
 SLC45A2 suggests that the 11th transmembrane domain where the 493rd amino
 acid was located, has an altered structure.
description: SLC45A2 genotypes and
 phenotypes of albino and control drogsTwo missense mutations
 were observed in an albino dog: P250L in exon 3 and G493D in exon 7 of
 SLC45A2. The genotypes of all the tested albino and control dogs for these
 two mutations and their coat colours are included in the
 file.SLC45A2 SNP Summery
 JOH-2014-205.R1.xlsxSupplemental Table
 1:Primers, annealing temperatures and the fragment of the SLC45A2 gene
 amplified.
 Supplemental Table
 1-JOH-2014-205.R1.docxSupplemental Figure 1-A
 topology prediction comparison for SLC45A2A topology prediction
 comparison for SLC45A2 was carried out using TMHMM (v. 2.0;
 http://www.cbs.dtu.dk/services/ TMHMM-2.0/). a) The topology prediction
 for a cream Poodle. b) The topology prediction for an albino Lhasa Apso.
 The boxed regions indicate the eleventh transmembrane domain of SLC45A2
 where the amino acid 493 is located. Comparison of the two panels clearly
 shows that the eleventh transmembrane domain of the albino Lhasa Apso has
 an altered structure.Supplemental Figure
 1-JOH-2014-205.R1.jpg
DOI: 10.5061/dryad.37n6f
title: Data from: Large niche differences emerge at the recruitment stage to stabilize grassland coexistence

description: Niche differences and average fitness differences jointly determine
 coexistence. However, little empirical information about the magnitude of
 these two mechanisms is available. Using multispecies population models
 fit to long-term demographic data for common, co-occurring species in five
 grassland and shrubland plant communities in western North America, we
 estimated the strength of stabilizing niche differences and average
 fitness differences. In all five communities, both pairwise and full
 community comparisons showed evidence for strong stabilizing mechanisms
 and relatively small average fitness differences. For a total of 17
 species pairs, a measure of niche differences based on simulations of
 invasion growth rates ranged from 0.59 to 0.93 with a mean of 0.81, where
 0 indicates complete niche overlap and 1 indicates zero niche overlap. A
 corresponding measure of average fitness differences ranged from 1.02 to
 2.54 with a mean of 1.53, where 1 indicates identical fitness and a value
 of 2 indicates a four-fold difference in sensitivity to competition.
 Comparisons of full communities displayed similar patterns: niche
 differences ranged from 0.58 to 0.69 with a mean of 0.64, and the average
 fitness differences ranged from 1.42 to 1.63 with a mean of 1.47. In
 almost every case, the stabilizing mechanisms were much stronger than
 minimally necessary to prevent competitive exclusion. Considering that all
 but one of the species we studied are perennial grasses, which are often
 grouped in the same functional type, the magnitude of these niche
 differences is surprising. In all five communities, differences between
 intra- and interspecific effects at the recruitment stage contributed far
 more to stabilization than interactions affecting growth and survival. Our
 results indicate that for these abundant, co-occurring species 1) dynamics
 are far from neutral, with strong niche differences and weak fitness
 differences combining to stabilize coexistence, and 2) processes operating
 at early life stages account for a large proportion of the stabilizing
 effect. Given the limitations of our inductive approach, both these
 findings represent hypotheses in need of experimental testing.
description: Long-term mapped data
 and R scriptsThis file includes
 extracted demographic data used in our paper from five study sites in
 Western USA. It includes all R scripts for relevant analyses as well, such
 as conducting model selection and Integral Projection
 Model.Data
 & Scripts submitted.zip
DOI: 10.6084/m9.figshare.28430546
title: Antiviral results against bacteriophage phi 6, bacteriophage MS2 and enterovirus EV71

description: Antiviral properties of several materials against bacteriophage phi 6 (an enveloped virus) and bacteriophage MS2 (a non-enveloped virus), and against enterovirus EV71.
DOI: 10.6084/m9.figshare.28430546.v5
title: Antiviral results against bacteriophage phi 6, bacteriophage MS2 and enterovirus EV71

description: Antiviral properties of several materials against bacteriophage phi 6 (an enveloped virus) and bacteriophage MS2 (a non-enveloped virus), and against enterovirus EV71.
DOI: 10.5061/dryad.7996
title: Data from: Phenotypic selection in natural populations: what limits directional selection?

description: Studies of phenotypic selection document directional selection in many
 natural populations. What factors reduce total directional selection, and
 the cumulative evolutionary responses to selection? We combine two
 datasets for phenotypic selection, representing more than 4600 distinct
 estimates of selection from 143 studies, to evaluate the potential roles
 of fitness trade-offs, indirect (correlated) selection, temporally varying
 selection, and stabilizing selection for reducing net directional
 selection and cumulative responses to selection. We detected little
 evidence that trade-offs among different fitness components reduced total
 directional selection in most study systems. Comparisons of selection
 gradients and selection differentials suggest that correlated selection
 frequently reduced total selection on size, but not on other types of
 traits. The direction of selection on a trait often changes over time in
 many temporally-replicated studies, but these fluctuations have limited
 impact in reducing cumulative directional selection in most study systems.
 Analyses of quadratic selection gradients indicated stabilizing selection
 on body size in at least some studies, but provided little evidence that
 stabilizing selection is more common than disruptive selection for most
 traits or study systems. Our analyses provide little evidence that fitness
 trade-offs, correlated selection or stabilizing selection strongly
 constrain the directional selection reported for most quantitative traits.
description: Kingsolver&Diamond.Selection_dataset_2010NovStandardized selection coefficients, derived from Kingsolver et al (2001, American Naturalist) and Siepielski et al (2009, Ecology Letters)
DOI: 10.6084/m9.figshare.28430546.v4
title: Antiviral results against bacteriophage phi 6, bacteriophage MS2 and enterovirus EV71

description: Antiviral properties of several materials against bacteriophage phi 6 (an enveloped virus) and bacteriophage MS2 (a non-enveloped virus), and against enterovirus EV71.
DOI: 10.5061/dryad.v1d06
title: Data from: Disruption of memory reconsolidation erases a fear memory trace in the human amygdala: An 18-month follow-up

description: Fear memories can be attenuated by reactivation followed by disrupted
 reconsolidation. Using functional magnetic resonance imaging we recently
 showed that reactivation and reconsolidation of a conditioned fear memory
 trace in the basolateral amygdala predicts subsequent fear expression over
 two days, while reactivation followed by disrupted reconsolidation
 abolishes the memory trace and suppresses fear. In this follow-up study we
 demonstrate that the behavioral effect persists over 18 months reflected
 in superior reacquisition after undisrupted, as compared to disrupted
 reconsolidation, and that neural activity in the basolateral amygdala
 representing the initial fear memory predicts return of fear. We conclude
 that disrupting reconsolidation have long lasting behavioral effects and
 may permanently erase an amygdala-dependent fear memory.
description: Data from: Disruption of
 memory reconsolidation erases a fear memory trace in the human amygdala:
 An 18-month follow-upThis is data is from a
 fear conditioning experiment measuring skin conductance and fMRI BOLD,
 pertaining to the article: Björkstrand J, Agren T, Frick A, Engman J,
 Larsson EM, Furmark T, Fredrikson M. Disruption of memory reconsolidation
 erases a fear memory trace in the human amygdala: An 18-month follow-up,
 yet to be published. Please consult this article and the original study:
 “Agren T, Engman J, Frick A, Björkstrand J, Larsson EM, Furmark T,
 Fredrikson M. 2012. Disruption of reconsolidation erases a fear memory
 trace in the human amygdala. Science 337:1550-1552” , for details
 concerning the purpose and design of the study. In the folder
 SCRdataAndGroup you can find an excel file containing raw and range
 corrected skin conductance responses (SCR) for all subjects from the
 follow-up measurement 18 months after fear acqusition, as well as
 information as to which subject belongs to which group. In the folders
 named subject1-19 you can find SPM8 contrast files from the renewal
 session three days after acquisition. The contrast shows the BOLD response
 to the first CSplus trial over an immediate preceding baseline for each
 subject. These files can be used to perform second level analysis using
 SPM8 for Matlab. In the folder MaskForColocalizationAnalysis you can find
 the SPM8 image file used to perform the colocalization analysis described
 in the follow-up study.Data.zip
DOI: 10.5061/dryad.j167m
title: Data from: Mental illness, poverty and stigma in India: a case control study

description: Objective: To assess the effect of experienced stigma on depth of
 multidimensional poverty of persons with severe mental illness (PSMI) in
 Delhi, India, controlling for gender, age and caste. Design: Matching case
 (hospital)–control (population) study. Setting: University Hospital
 (cases) and National Capital Region (controls), India. Participants: A
 case–control study was conducted from November 2011 to June 2012. 647
 cases diagnosed with schizophrenia or affective disorders were recruited
 and 647 individuals of same age, sex and location of residence were
 matched as controls at a ratio of 1:2:1. Individuals who refused consent
 or provided incomplete interview were excluded. Main outcome measures:
 Higher risk of poverty due to stigma among PSMI. Results: 38.5% of PSMI
 compared with 22.2% of controls were found poor on six dimensions or more.
 The difference in multidimensional poverty index was 69% between groups
 with employment and income of the main contributors. Multidimensional
 poverty was strongly associated with stigma (OR 2.60, 95% CI 1.27 to
 5.31), scheduled castes/scheduled tribes/other backward castes (2.39, 1.39
 to 4.08), mental illness (2.07, 1.25 to 3.41) and female gender (1.87,
 1.36 to 2.58). A significant interaction between stigma, mental illness
 and gender or caste indicates female PSMI or PSMI from ‘lower castes’ were
 more likely to be poor due to stigma than male controls (p&lt;0.001)
 or controls from other castes (p&lt;0.001). Conclusions: Public stigma
 and multidimensional poverty linked to SMI are pervasive and intertwined.
 In particular for low caste and women, it is a strong predictor of
 poverty. Exclusion from employment linked to negative attitudes and lack
 of income are the highest contributors to multidimensional poverty,
 increasing the burden for the family. Mental health professionals need to
 be aware of and address these issues.
description: MISPI_datasetThe dataset contains general information about the construction of the dwelling, source of cooking fuel, light etc., eating habits within the household (HH), HH expenditure, HH assets, and respondent general views about various aspects of inclusion of persons with disabilities.MISPICodebookv3.docx