cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p92dpg93
title: Stage-Storage and Bed Material Data from the 2020 Upper Letts Lake Survey, California

description: On October 13, 2020 a survey of Upper Letts Lake was conducted where both bathymetric and terrestrial lidar data were collected. Additionally, six bed material samples and three core samples were collected to understand the characterization of the grain-size of the lake bed. Survey data were merged with an additional lidar dataset from the USGS 3DEP program to create digital elevation model (DEM). The DEM was used to update the stage-storage and stage-surface area tables for the reservoir. This data release provides the following data sets; 1) bathymetric and terrestrial elevation data, 2) Combined bathymetric and 3DEP DEM, 3) stage-storage and stage-surface area tables from DEM, and 4) bed material grain-size and loss of ignition results (percent organics). Results show that the storage for the Upper Letts Lake is 377 acre-feet with a surface area of 34.5 acre at the elevation of the spillway outlet. Bed material samples show that the median diameter of the bed ranges from 0.044 to 0.094 mm, with the organic content ranging from 39 to 61 percent. Core samples show that the median diameter of the near-bed strata ranges from 0.868 to 1.342 mm, with the organic content ranging from 8 to 17 percent. For bed material samples, the average gravel, sand, silt, and clay percentages were 0%, 52%, 41%, and 7%, respectively. For core samples, the average gravel, sand, silt, and clay percentages were 61%, 26%, 12%, and 1%, respectively.
DOI: 10.5281/zenodo.5583263
title: Replication Package for: "Pre-Colonial Warfare and Long-Run Development in India"

description: Data and code to replicate all the results in the article Dincecco, Mark; Fenske, James; Menon, Anil; and Mukherjee, Shivaji "Pre-Colonial Warfare and Long-Run Development in India," Economic Journal.
DOI: 10.5281/zenodo.5583262
title: Replication Package for: "Pre-Colonial Warfare and Long-Run Development in India"

description: Data and code to replicate all the results in the article Dincecco, Mark; Fenske, James; Menon, Anil; and Mukherjee, Shivaji "Pre-Colonial Warfare and Long-Run Development in India," Economic Journal.
DOI: 10.6084/m9.figshare.16867249
title: Ties that bind data

description: In this folder there is the data to replicate the paper "The ties that bind and transform: knowledge remittances, relatedness, and the direction of technical change". In the folder there is a .dta file that contains the data in Stata format, and an .xls file that provides a description of the variables.
DOI: 10.6084/m9.figshare.16867249.v2
title: Ties that bind data.rar

description: In this folder there is the data to replicate the paper "The ties that bind and transform: knowledge remittances, relatedness, and the direction of technical change". In the folder there is a .dta file that contains the data in Stata format, and an .xls file that provides a description of the variables.
DOI: 10.5066/p9peq2fx
title: USGS46a Greenland ice core water ? A reference material for stable hydrogen and oxygen isotopic composition of water

description: Ice core from Greenland was melted, filtered, and homogenized. Its stable hydrogen (&#948;2H) and oxygen (&#948;18O) isotopic compositions were adjusted to approximately match those of USGS46 ice core water (&#948;2H = ?235.8 ? and &#948;18O = ?29.80 ?). This isotopic reference water, USGS46a, was loaded into glass ampules, sealed, autoclaved to eliminate biological activity, and calibrated by dual-inlet isotope-ratio mass spectrometry and laser absorption spectrometry. USGS46a is intended as one of two secondary isotopic reference waters for daily normalization of stable hydrogen and stable oxygen isotopic analysis of water with a mass spectrometer or a laser absorption spectrometer. The measured &#948;2H and &#948;18O values of USGS46a reference water were ?235.6 ? 0.7 ? and ?30.09 ? 0.05 ?, respectively, relative to VSMOW on scales normalized such that the &#948;2H and &#948;18O values of SLAP reference water are, respectively, ?428 and ?55.5 ?. Each uncertainty is an estimated expanded uncertainty (U = 2uc) about the reference value that provides an interval that has about a 95-percent probability of encompassing the true value. This reference water is available in cases containing 144 glass ampules that are filled with 5 mL of water per ampule and in silver tubes for use in high temperature elemental analyzers.
DOI: 10.5066/p9qkso4w
title: Planktonic foraminifer census data from type section of Yorktown Formation at Rushmere, Virginia, USA

description: Data consist of census counts of Pliocene planktonic foraminifera from the lectostratotype of the Yorktown Formation at Rushmere Virginia, Rice's Pit, Yorktown, and the type section of the Morgarts Beach Member at Morgarts Beach, Virginia. In total, counts of individuals from 12 samples and 25 species are included.
DOI: 10.5281/zenodo.5597141
title: Measured wave, eddy-covariance and energy budget data

description: Measurement data of wave, eddy-covariance and energy budget in Lake Balaton, Hungary May - Oct 2019
DOI: 10.5281/zenodo.5597140
title: Measured wave, eddy-covariance and energy budget data

description: Measurement data of wave, eddy-covariance and energy budget in Lake Balaton, Hungary May - Oct 2019
DOI: 10.6084/m9.figshare.16617521
title: Generalized Tensor Decomposition With Features on Multiple Modes

description: Higher-order tensors have received increased attention across science and engineering. While most tensor decomposition methods are developed for a single tensor observation, scientific studies often collect side information, in the form of node features and interactions thereof, together with the tensor data. Such data problems are common in neuroimaging, network analysis, and spatial-temporal modeling. Identifying the relationship between a high-dimensional tensor and side information is important yet challenging. Here, we develop a tensor decomposition method that incorporates multiple feature matrices as side information. Unlike unsupervised tensor decomposition, our supervised decomposition captures the effective dimension reduction of the data tensor confined to feature space of interest. An efficient alternating optimization algorithm with provable spectral initialization is further developed. Our proposal handles a broad range of data types, including continuous, count, and binary observations. We apply the method to diffusion tensor imaging data from human connectome project and multi-relational political network data. We identify the key global connectivity pattern and pinpoint the local regions that are associated with available features. The package and data used are available at https://CRAN.R-project.org/package=tensorregress. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.16617521.v2
title: Generalized Tensor Decomposition With Features on Multiple Modes

description: Higher-order tensors have received increased attention across science and engineering. While most tensor decomposition methods are developed for a single tensor observation, scientific studies often collect side information, in the form of node features and interactions thereof, together with the tensor data. Such data problems are common in neuroimaging, network analysis, and spatial-temporal modeling. Identifying the relationship between a high-dimensional tensor and side information is important yet challenging. Here, we develop a tensor decomposition method that incorporates multiple feature matrices as side information. Unlike unsupervised tensor decomposition, our supervised decomposition captures the effective dimension reduction of the data tensor confined to feature space of interest. An efficient alternating optimization algorithm with provable spectral initialization is further developed. Our proposal handles a broad range of data types, including continuous, count, and binary observations. We apply the method to diffusion tensor imaging data from human connectome project and multi-relational political network data. We identify the key global connectivity pattern and pinpoint the local regions that are associated with available features. The package and data used are available at https://CRAN.R-project.org/package=tensorregress. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.16617521.v1
title: Generalized tensor decomposition with features on multiple modes

description: Higher-order tensors have received increased attention across science and engineering. While most tensor decomposition methods are developed for a single tensor observation, scientific studies often collect side information, in the form of node features and interactions thereof, together with the tensor data. Such data problems are common in neuroimaging, network analysis, and spatial-temporal modeling. Identifying the relationship between a high-dimensional tensor and side information is important yet challenging. Here, we develop a tensor decomposition method that incorporates multiple feature matrices as side information. Unlike unsupervised tensor decomposition, our supervised decomposition captures the effective dimension reduction of the data tensor confined to feature space of interest. An efficient alternating optimization algorithm with provable spectral initialization is further developed. Our proposal handles a broad range of data types, including continuous, count, and binary observations. We apply the method to diffusion tensor imaging data from human connectome project and multi-relational political network data. We identify the key global connectivity pattern and pinpoint the local regions that are associated with available features. The package and data used are available at https://CRAN.R-project.org/package=tensorregress. Supplementary materials for this article are available online.
DOI: 10.15468/vcb8fv
title: New species of Doliodrilus and other Limnodriloidinae (Oligochaeta, Tubificidae) from Hainan and other parts of the north-west Pacific Ocean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Hongzhu, Erséus, Christer (2004): New species of Doliodrilus and other Limnodriloidinae (Oligochaeta, Tubificidae) from Hainan and other parts of the north-west Pacific Ocean. Journal of Natural History 38 (3): 269-299, DOI: 10.1080/0022293021000028252, URL: http://www.tandfonline.com/doi/abs/10.1080/0022293021000028252
DOI: 10.5066/p9fnarqo
title: Interferometric Synthetic Aperture Radar and Groundwater-Level Data, Pajaro Valley, Santa Cruz and Monterey Counties, California, 1970-2018

description: Synthetic aperture radar (SAR) data for 2015 through 2018 from the European Space Agency's (ESA) Sentinel-1A satellite were acquired from the Alaskan Satellite Facility and used to generate spatially detailed land-surface deformation maps (interferograms) for the Pajaro Valley using conventional Interferometric Synthetic Aperture Radar (InSAR) workflows. Groundwater-level data for 1970 thourgh 2018 at selected loactions in the Pajaro Valley were provided by the Pajaro Valley Water Management Agency.
DOI: 10.6084/m9.figshare.16864297
title: Bibliometric data

description: The single file containing all the results of the Web of Science search used in analyzing data in R (bibliometrix package) can also be imported into most reference management software (e.g., Zotero, Endnote) or viewed in a text editor (e.g., bibtex, textpad)<br>
DOI: 10.6084/m9.figshare.16864297.v1
title: Bibliometric data

description: These files can be imported into most reference management software (e.g., Zotero, Endnote) or viewed in a text editor (e.g., Textpad, Note)<br>
DOI: 10.6084/m9.figshare.16606340
title: Efficient Bayesian Synthetic Likelihood With Whitening Transformations

description: Likelihood-free methods are an established approach for performing approximate Bayesian inference for models with intractable likelihood functions. However, they can be computationally demanding. Bayesian synthetic likelihood (BSL) is a popular such method that approximates the likelihood function of the summary statistic with a known, tractable distribution—typically Gaussian—and then performs statistical inference using standard likelihood-based techniques. However, as the number of summary statistics grows, the number of model simulations required to accurately estimate the covariance matrix for this likelihood rapidly increases. This poses a significant challenge for the application of BSL, especially in cases where model simulation is expensive. In this article, we propose whitening BSL (wBSL)—an efficient BSL method that uses approximate whitening transformations to decorrelate the summary statistics at each algorithm iteration. We show empirically that this can reduce the number of model simulations required to implement BSL by more than an order of magnitude, without much loss of accuracy. We explore a range of whitening procedures and demonstrate the performance of wBSL on a range of simulated and real modeling scenarios from ecology and biology. Supplementary materials for this article are available online.
DOI: 10.7909/c3154f0q
title: Community Seismic Network (CSN)
DOI: 10.26300/33sr-r749
title: Project: Strategies for Patient, Family, and Caregiver Engagement. Technical Brief
DOI: 10.6084/m9.figshare.12130980.v115
title: MOOD Maps of Google community mobility change during the COVID-19 outbreak

description: The MOOD project (MOnitoring Outbreak events for Disease surveillance in a data science context. H2020) has geo-referenced the data Google has published as a series of PDF files presenting reports on national and subnational human mobility levels relative to a baseline data of late January 2020. The details and the PDF files can be found at https://www.google.com/covid19/mobility/.<br>More detail on these files can be found at https://www.moodspatialdata.com/humanmobilityforcovid19 <br>The first set of data were released on April 2 2020 and have been revised weekly since then. The maps now utilise the CSV data released by Google. Please note that the maps figures use a mean of the previous three days, while the Google PDFs use a single days data so there will be differences between values in our maps when compare to the Google PDFs.<br>The authors have extracted the majority of these data into a series of excel spreadsheets. Each worksheet provides the data for % change in numbers of records at various types of location categories illustrated by: retail and recreation, grocery and pharmacy, parks and beaches, transit stations, workplaces and residential (columns f to K). A second set of columns calculates the difference of each value from the mean values for each category (columns L to P) Columns A to E contain geographical details. Column Q contains the names used to link to a mapping file.There are separate worksheets for the date of the data from each dated release (e.g. 2903, 0504 etc.) and separate worksheets calculating the changes between specific dates.<br>A second spreadsheet has been added calculating the 3 day moving mean of each day from the 15th of February. Each day is referenced by the Gregorian calendar day count. So day 48 = Feb 17th.<br>The maps (for EU & Global) display these data. We provide 600 dpi jpegs of the Global (“WD”) and European (“EU”) mapped values at the latest date available, for each of the mobility categories: retail and recreation (“retrec”) , grocery and pharmacy (“grocphar”) , parks (“parks”) , transit stations (“transit”), residential (“resid”) and workplaces (“work”). We also provide maps of the changes from the previous week (“ch”).<br>All data extracting and subsequent processing have been carried out by ERGO (Environmental Research Group Oxford, c/o Dept Zoology, University of Oxford) on behalf of the MOOD H2020 project. Data will be periodically updated. Additional maps can be obtained on request to the authors.
DOI: 10.15482/usda.adc/1523395
title: Ladona fulva Official Gene Set ladful_OGSv1.1
DOI: 10.25345/c50k24
title: MassIVE MSV000088262 - GNPS_YZ_POS_Alignment_TWSample_set
title: Untargeted LC-MS/MS data was collected in both positive and negative ionization mode for pharmaceutical wastewater sample
DOI: 10.5517/ccdc.csd.cc27n2tt
title: CCDC 2074886: Experimental Crystal Structure Determination

description: Related Article: Tímea Benkó, Dávid Lukács, Krisztina Frey, Miklós Németh, Márta Móricz, Dongyu Liu, Éva Kováts, Nóra May, Lionel Vayssieres, Mingtao Li, József Pap|2021|Cat.Sci.Tech.|11|6411|doi:10.1039/d1cy01087e
description: Related Article: Tímea Benkó, Dávid Lukács, Krisztina Frey, Miklós Németh, Márta M. Móricz, Dongyu Liu, Éva Kováts, Nóra V. May, Lionel Vayssieres, Mingtao Li, József S. Pap|2021|Cat.Sci.Tech.|11|6411|doi:10.1039/D1CY01087E
DOI: 10.15468/a5t35d
title: Nepticulidae (Lepidoptera) of East Asia (1). Re-examination of the male genitalia of types deposited at the Russian Academy of Sciences

description: This dataset contains the digitized treatments in Plazi based on the original journal article Stonis, Jonas R., Rocienė, Agnė (2013): Nepticulidae (Lepidoptera) of East Asia (1). Re-examination of the male genitalia of types deposited at the Russian Academy of Sciences. Zootaxa 3652 (1): 1-59, DOI: http://dx.doi.org/10.11646/zootaxa.3652.1.1
DOI: 10.15468/mp857x
title: Novel techniques for biodiversity studies of gordiids and description of a new species of Chordodes (Gordiida, Nematomorpha) from Kenya, Africa

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bolek, Matthew G., Szmygiel, Cleo, Kubat, Austin, Schmidt-Rhaesa, Andreas, Hanelt, Ben (2013): Novel techniques for biodiversity studies of gordiids and description of a new species of Chordodes (Gordiida, Nematomorpha) from Kenya, Africa. Zootaxa 3717 (1): 23-38, DOI: http://dx.doi.org/10.11646/zootaxa.3717.1.2
DOI: 10.34948/n3tg6j
title: NGA-Sub Relational Database Tables: R211022
DOI: 10.5281/zenodo.5597512
title: Exogenous oxidative stressors elicit differing age and sex effects

description: Data and scripts for the manuscript entitled "Exogenous oxidative stressors elicit differing age and sex effects" submitted to <em>Experimental Gerontology. </em>
DOI: 10.3886/e120841v1
title: pragmatic truth

description: In crisis situations, people put a premium on relevant information. Two experiments show that messages with clear decision implications and known factual errors are preferred over factually correct messages with ambiguous decision implications and more likely to be shared. This challenges a fundamental norm of cooperative conversational conduct, namely, not to say something one believes to be false. We propose a distinction between pragmatic and literal truth; literal truth pertains to the veracity of the message-as-a-whole, whereas pragmatic truth pertains to the accuracy of its decision-relevant implications. When literal and pragmatic truth conflict, speakers and receivers privilege pragmatic truth over literal truth. Implications for norms of conversational conduct and the accuracy of crisis communication are discussed.
DOI: 10.5281/zenodo.5597741
title: Trinity assembly of grapevine downy mildew lesion- DMG-B

description: DE novo Trinity assembly of NGS reads from RNAseq, transcriptome
DOI: 10.5281/zenodo.5597740
title: Trinity assembly of grapevine downy mildew lesion- DMG-B

description: DE novo Trinity assembly of NGS reads from RNAseq, transcriptome
DOI: 10.6084/m9.figshare.16867318
title: TCR repertoires of melanoma patient 34 (mp34) TILs

description: TCR repertoires of bulk TILs of mp34 expanded in variable cultivation conditions for 9 days.<br><br>
DOI: 10.6084/m9.figshare.16867318.v2
title: TCR repertoires of melanoma patient 34 (mp34) TILs

description: TCR repertoires of bulk TILs of mp34 expanded in variable cultivation conditions for 9 days.<br><br>
DOI: 10.6084/m9.figshare.16867318.v1
title: Melanoma patient 34 (mp34) TCR repertoires

description: TCR repertoires of bulk TILs of mp34 expanded in variable cultivation conditions for 9 days.<br><br>
DOI: 10.6084/m9.figshare.16867291
title: TCR repertoires of melanoma patient 26 (mp26) TILs

description: TCR repertoires of sorted CD8 CD39 PD-1 double-positive(DP) and not-double-positive (notDP) TILs of melanoma patient 26 (mp26) TILs from two metastasized lymph nodes. <br><br>TCR repertoires of bulk TILs expanded in variable cultivation conditions for 9 days.<br>TCR repertoires of expanded and re-stimulated CD137-positive TILs with initial DP and not-DP phenotype. TILs were restimulated with a mix of melanoma tumor-associated antigens (TAA) or control peptide. <br>
DOI: 10.6084/m9.figshare.16867291.v2
title: Melanoma patient 26 (mp26) TCR repertoires

description: TCR repertoires of sorted CD8 CD39 PD-1 double-positive(DP) and not-double-positive (notDP) TILs of melanoma patient 26 (mp26) TILs from two metastasized lymph nodes. <br><br>TCR repertoires of bulk TILs expanded in variable cultivation conditions for 9 days.<br>TCR repertoires of expanded and re-stimulated CD137-positive TILs with initial DP and not-DP phenotype. TILs were restimulated with a mix of melanoma tumor-associated antigens (TAA) or control peptide. <br>
DOI: 10.6084/m9.figshare.16867291.v1
title: Melanoma patient 26 (mp26) TCR repertoire analysis

description: TCR repertoires of sorted CD8 CD39 PD-1 double-positive(DP) and not-double-positive (notDP) TILs of melanoma patient 26 (mp26) TILs from two metastasized lymph nodes. <br><br>TCR repertoires of bulk TILs expanded in variable cultivation conditions for 9 days.<br>TCR repertoires of expanded and re-stimulated CD137-positive TILs with initial DP and not-DP phenotype. TILs were restimulated with a mix of melanoma tumor-associated antigens (TAA) or control peptide. <br>
DOI: 10.6084/m9.figshare.16869173
title: Genomic signatures and insights into host niche adaptation of the entomopathogenic fungus Metarhizium humberi

description: <b>Additional file 1. </b>Table S1.<b> </b>Main assembly summary assessed with QUAST tool in four de novo assemblers used to reconstruct the genome of <i>Metarhizium humberi</i> ESALQ1638.Table S2. The Geographical origin and host/substrate from each <i>Metarhizium </i>strain; <b>Additional file 2</b> . R script used to generate Mummer-like plotting, also available at the GitLab repository: https://gitlab.nibio.no/simeon/iwanicki_et_al_21; <b>Additional file 3 </b>. R script used to create the phylogenetic tree, also available at the GitLab repository: https://gitlab.nibio.no/simeon/iwanicki_et_al_21; <b>Additional file 4. </b>Table S3. List of repetitive elements in the genome of <i>Metarhizium humberi</i> ESALQ1638; <b>Additional file 5. </b>Table S4. List of repetitive elements in <i>Metarhizium</i> genomes; <b>Additional file 6. </b>Table S5. InterPro categories related to transcription factors; <b>Additional file 7. </b>Table S6. InterProScan analysis and comparison of <i>Metarhizium humberi</i> ESALQ1638 with other 10 <i>Metarhizium</i> genomes and outgroups; <b>Additional file 8. </b>tRNAscan analyses <b>Additional file 9. </b>Orthologous genes in <i>Metarhizium</i> species; <b>Additional file 10. </b>InterPro category; <b>Additional file 11. </b>Overrepresented biological process GO-terms in rapidly evolving gene families in <i>Metarhizium </i>spp. <b>Additional file 12. </b>Spreadsheets of <i>Metarhizium</i> spp. predicted secretomes; <b>Additional file 13. </b><i>Metarhizium</i> spp. secondary metabolites. Table S7. Overview of polyketide synthases (PKSs).<b> </b>Table S8. Overview of nonribosomal peptide synthetases (NRPS).; <b>Additional file 14. </b>Pathogen-host interaction (PHI) dataset.