cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6693338
title: The genome sequence of Dyella jiangningensis FCAV SCS01 from a lignocellulose-decomposing microbial consortium metagenome reveals potential for biotechnological applications

description: Abstract Cellulose and its associated polymers are structural components of the plant cell wall, constituting one of the major sources of carbon and energy in nature. The carbon cycle is dependent on cellulose- and lignin-decomposing microbial communities and their enzymatic systems acting as consortia. These microbial consortia are under constant exploration for their potential biotechnological use. Herein, we describe the characterization of the genome of Dyella jiangningensis FCAV SCS01, recovered from the metagenome of a lignocellulose-degrading microbial consortium, which was isolated from a sugarcane crop soil under mechanical harvesting and covered by decomposing straw. The 4.7 Mbp genome encodes 4,194 proteins, including 36 glycoside hydrolases (GH), supporting the hypothesis that this bacterium may contribute to lignocellulose decomposition. Comparative analysis among fully sequenced Dyella species indicate that the genome synteny is not conserved, and that D. jiangningensis FCAV SCS01 carries 372 unique genes, including an alpha-glucosidase and maltodextrin glucosidase coding genes, and other potential biomass degradation related genes. Additional genomic features, such as prophage-like, genomic islands and putative new biosynthetic clusters were also uncovered. Overall, D. jiangningensis FCAV SCS01 represents the first South American Dyella genome sequenced and shows an exclusive feature among its genus, related to biomass degradation.
DOI: 10.6084/m9.figshare.6693338.v1
title: The genome sequence of Dyella jiangningensis FCAV SCS01 from a lignocellulose-decomposing microbial consortium metagenome reveals potential for biotechnological applications

description: Abstract Cellulose and its associated polymers are structural components of the plant cell wall, constituting one of the major sources of carbon and energy in nature. The carbon cycle is dependent on cellulose- and lignin-decomposing microbial communities and their enzymatic systems acting as consortia. These microbial consortia are under constant exploration for their potential biotechnological use. Herein, we describe the characterization of the genome of Dyella jiangningensis FCAV SCS01, recovered from the metagenome of a lignocellulose-degrading microbial consortium, which was isolated from a sugarcane crop soil under mechanical harvesting and covered by decomposing straw. The 4.7 Mbp genome encodes 4,194 proteins, including 36 glycoside hydrolases (GH), supporting the hypothesis that this bacterium may contribute to lignocellulose decomposition. Comparative analysis among fully sequenced Dyella species indicate that the genome synteny is not conserved, and that D. jiangningensis FCAV SCS01 carries 372 unique genes, including an alpha-glucosidase and maltodextrin glucosidase coding genes, and other potential biomass degradation related genes. Additional genomic features, such as prophage-like, genomic islands and putative new biosynthetic clusters were also uncovered. Overall, D. jiangningensis FCAV SCS01 represents the first South American Dyella genome sequenced and shows an exclusive feature among its genus, related to biomass degradation.
DOI: 10.6084/m9.figshare.6693335
title: Gastrointestinal parasites among felids inhabiting the Serra dos Órgãos National Park, Rio de Janeiro, Brazil

description: Abstract This study aimed to investigate the species of felids that inhabit the Serra dos Órgãos National Park (Parnaso) and gastrointestinal parasites at various stages of their life cycles in the feces of these animals. Between 2013 and 2015, felid feces were collected from trails in Parnaso. The sampling points were georeferenced. A total of 82 fecal samples were processed, of which 79 were collected on the ground, two from captured felids and one from a necropsied animal. All samples underwent coproparasitological techniques. Samples collected from the environment underwent additional trichological analysis. Fur patterns corresponding to Leopardus guttulus, Leopardus pardalis, Leopardus wiedii and Puma yagouaroundi were observed in 32 of the samples collected on the soil. High frequency of potentially parasitic evolving forms (88.6%) was observed in felid feces, particularly eggs of the family Diphyllobothriidae (68.6%). Besides, were also detected, eggs of superfamily Ascaridoidea (42.9%), nematode larvae (28.6%), eggs of order Strongylida (28.6%), Capillaria sp. (8.6%), Trichuris sp. (8.6%), eggs of order Spirurida (2.9%), unsporulated coccidian oocysts (8.6%) and Eimeria sp. (2.9%). Felid feces presented higher frequency of polyparasitism (60%) than monoparasitism (28.6%).
DOI: 10.6084/m9.figshare.6693329
title: 99mTc-DTPA Diuretic Renography with 3 hours late output fraction in the evaluation of hydronephrosis in children

description: ABSTRACT Objective: Dynamic renal scintigraphy complemented by late gravity assisted postvoid images to 60 minutes is a frequently used diagnostic test in the evaluation of hydrone- phrosis. The objective of this study is to evaluate the effectiveness in acquiring images at 180 minutes to calculate the late output fraction (LOF) of 99mTc-DTPA in the diagno- sis of ureteropelvic junction obstruction (UPJO). Materials and Methods: A retrospective study of 177 patients (196 renal units) of sus- pected cases of clinical UPJO was conducted. The patients were submitted to at least two dynamic renal scintigraphies of 99mTc-DTPA, with the addition of furosemide (F0), with a mean age of 4.3±3.8 years for the first study, and a follow-up of 2.7±2.5 years. Results: For diagnosis based on renal curves, a 100% sensitivity, 82.2% specificity, positive predictive value (PPV) of 10.4% and negative predictive value (NPV) of 100% were estimated. For diagnosis based on LOF, a 100% sensitivity, 96.3% specificity, PPV of 35.7% and NPV of 100% were estimated. Conclusion: A LOF &lt;10% is indicative of UPJO, and a LOF ≥15% is indicative of no UPJO. The data demonstrate that LOF presents equivalent sensitivity and NPV, and higher specificity and PPV in comparison to diagnosis based on renal curves, and is useful in the evaluation and follow-up of suspected cases of UPJO.
DOI: 10.6084/m9.figshare.6693335.v1
title: Gastrointestinal parasites among felids inhabiting the Serra dos Órgãos National Park, Rio de Janeiro, Brazil

description: Abstract This study aimed to investigate the species of felids that inhabit the Serra dos Órgãos National Park (Parnaso) and gastrointestinal parasites at various stages of their life cycles in the feces of these animals. Between 2013 and 2015, felid feces were collected from trails in Parnaso. The sampling points were georeferenced. A total of 82 fecal samples were processed, of which 79 were collected on the ground, two from captured felids and one from a necropsied animal. All samples underwent coproparasitological techniques. Samples collected from the environment underwent additional trichological analysis. Fur patterns corresponding to Leopardus guttulus, Leopardus pardalis, Leopardus wiedii and Puma yagouaroundi were observed in 32 of the samples collected on the soil. High frequency of potentially parasitic evolving forms (88.6%) was observed in felid feces, particularly eggs of the family Diphyllobothriidae (68.6%). Besides, were also detected, eggs of superfamily Ascaridoidea (42.9%), nematode larvae (28.6%), eggs of order Strongylida (28.6%), Capillaria sp. (8.6%), Trichuris sp. (8.6%), eggs of order Spirurida (2.9%), unsporulated coccidian oocysts (8.6%) and Eimeria sp. (2.9%). Felid feces presented higher frequency of polyparasitism (60%) than monoparasitism (28.6%).
DOI: 10.6084/m9.figshare.6693329.v1
title: 99mTc-DTPA Diuretic Renography with 3 hours late output fraction in the evaluation of hydronephrosis in children

description: ABSTRACT Objective: Dynamic renal scintigraphy complemented by late gravity assisted postvoid images to 60 minutes is a frequently used diagnostic test in the evaluation of hydrone- phrosis. The objective of this study is to evaluate the effectiveness in acquiring images at 180 minutes to calculate the late output fraction (LOF) of 99mTc-DTPA in the diagno- sis of ureteropelvic junction obstruction (UPJO). Materials and Methods: A retrospective study of 177 patients (196 renal units) of sus- pected cases of clinical UPJO was conducted. The patients were submitted to at least two dynamic renal scintigraphies of 99mTc-DTPA, with the addition of furosemide (F0), with a mean age of 4.3±3.8 years for the first study, and a follow-up of 2.7±2.5 years. Results: For diagnosis based on renal curves, a 100% sensitivity, 82.2% specificity, positive predictive value (PPV) of 10.4% and negative predictive value (NPV) of 100% were estimated. For diagnosis based on LOF, a 100% sensitivity, 96.3% specificity, PPV of 35.7% and NPV of 100% were estimated. Conclusion: A LOF &lt;10% is indicative of UPJO, and a LOF ≥15% is indicative of no UPJO. The data demonstrate that LOF presents equivalent sensitivity and NPV, and higher specificity and PPV in comparison to diagnosis based on renal curves, and is useful in the evaluation and follow-up of suspected cases of UPJO.
DOI: 10.6084/m9.figshare.6693323
title: Gastrointestinal helminths of two populations of wild pigeons (Columba livia) in Brazil

description: Abstract The present study analyzed gastrointestinal helminth communities in 265 wild pigeons (Columba livia) living in the municipalities of São Paulo and Tatuí, state of São Paulo, Brazil, over a one-year period. The birds were caught next to grain storage warehouses and were necropsied. A total of 790 parasites comprising one nematode species and one cestode genus were recovered from 110 pigeons, thus yielding an overall prevalence of 41.5%, mean intensity of infection of 7.2 ± 1.6 (range 1-144) and discrepancy index of 0.855. Only 15 pigeons (5.7%) presented mixed infection. The helminths isolated from the birds were Ascaridia columbae (Ascaridiidae) and Raillietina sp. (Davaineidae). The birds’ weights differed according to sex but this did not influence the intensity of infection. The overall prevalence and intensity of infection did not differ between the sexes, but the prevalence was higher among the birds from Tatuí (47.8%). The gastrointestinal helminth community of C. livia was characterized in the two areas studied and parasite homogeneity was observed over the 12 months analyzed at both locations. These results make contributions to the current literature on health aspects of wild C. livia populations.
DOI: 10.6084/m9.figshare.6693323.v1
title: Gastrointestinal helminths of two populations of wild pigeons (Columba livia) in Brazil

description: Abstract The present study analyzed gastrointestinal helminth communities in 265 wild pigeons (Columba livia) living in the municipalities of São Paulo and Tatuí, state of São Paulo, Brazil, over a one-year period. The birds were caught next to grain storage warehouses and were necropsied. A total of 790 parasites comprising one nematode species and one cestode genus were recovered from 110 pigeons, thus yielding an overall prevalence of 41.5%, mean intensity of infection of 7.2 ± 1.6 (range 1-144) and discrepancy index of 0.855. Only 15 pigeons (5.7%) presented mixed infection. The helminths isolated from the birds were Ascaridia columbae (Ascaridiidae) and Raillietina sp. (Davaineidae). The birds’ weights differed according to sex but this did not influence the intensity of infection. The overall prevalence and intensity of infection did not differ between the sexes, but the prevalence was higher among the birds from Tatuí (47.8%). The gastrointestinal helminth community of C. livia was characterized in the two areas studied and parasite homogeneity was observed over the 12 months analyzed at both locations. These results make contributions to the current literature on health aspects of wild C. livia populations.
DOI: 10.6084/m9.figshare.6693320
title: Rapid and Efficient Uncatalyzed Knoevenagel Condensations from Binary Mixture of Ethanol and Water

description: This paper presents a new green protocol for Knoevenagel condensations of aldehydes and compounds with an active methylene group in a binary mixture of ethanol/water (3:7, v/v). This medium favored the uncatalyzed Knoevenagel reactions and easy workup products can be obtained by precipitation in this medium and showed good isolated yields (55-100%) in short reaction times (1-60 min).
DOI: 10.6084/m9.figshare.6693320.v1
title: Rapid and Efficient Uncatalyzed Knoevenagel Condensations from Binary Mixture of Ethanol and Water

description: This paper presents a new green protocol for Knoevenagel condensations of aldehydes and compounds with an active methylene group in a binary mixture of ethanol/water (3:7, v/v). This medium favored the uncatalyzed Knoevenagel reactions and easy workup products can be obtained by precipitation in this medium and showed good isolated yields (55-100%) in short reaction times (1-60 min).
DOI: 10.6084/m9.figshare.6693314
title: Flora of Paraíba State, Brazil: Aechmea Ruiz & Pav. (Bromeliaceae)

description: Abstract: Aechmea is one of the largest genera of Bromeliaceae, having more than 250 species, and Brazil is its principal center of endemism. We taxonomically examined the species of Aechmea encountered in Paraíba State in northeastern Brazil. Our analyses were based on specimens collected during the present study, as well as examinations of local and regional herbaria collections. Eleven species were encountered to State: Aechmea aquilega, A. chrysocoma, A. costantinii, A. emmerichiae, A. eurycorymbus, A. fulgens, A. leptantha, A. mertensii, A. nudicaulis, A. patentissima, and A. werdermannii. Of those taxa, seven are endemic to northeastern Brazil and five are included within one of the threatened categories according to IUCN criteria, two of them being "endangered" and "critically endangered". We include here a key to the identification of the species, a list of the materials examined, commentaries concerning the taxonomic affinities of the species based on morphological characters, data concerning their geographic distributions, flowering, fruiting, inferences concerning their conservation statuses, as well as images and drawings indicating their principal characteristics.
DOI: 10.6084/m9.figshare.6693314.v1
title: Flora of Paraíba State, Brazil: Aechmea Ruiz & Pav. (Bromeliaceae)

description: Abstract: Aechmea is one of the largest genera of Bromeliaceae, having more than 250 species, and Brazil is its principal center of endemism. We taxonomically examined the species of Aechmea encountered in Paraíba State in northeastern Brazil. Our analyses were based on specimens collected during the present study, as well as examinations of local and regional herbaria collections. Eleven species were encountered to State: Aechmea aquilega, A. chrysocoma, A. costantinii, A. emmerichiae, A. eurycorymbus, A. fulgens, A. leptantha, A. mertensii, A. nudicaulis, A. patentissima, and A. werdermannii. Of those taxa, seven are endemic to northeastern Brazil and five are included within one of the threatened categories according to IUCN criteria, two of them being "endangered" and "critically endangered". We include here a key to the identification of the species, a list of the materials examined, commentaries concerning the taxonomic affinities of the species based on morphological characters, data concerning their geographic distributions, flowering, fruiting, inferences concerning their conservation statuses, as well as images and drawings indicating their principal characteristics.
DOI: 10.6084/m9.figshare.6693311
title: Malpighiaceae in the Raso da Catarina Ecoregion, Bahia, Brazil

description: Abstract This study presents a floristic survey of Malpighiaceae species from in the Raso da Catarina Ecoregion in the state of Bahia, Brazil. After extensive field and herbarium studies, we identified 18 genera and 32 species of Malpighiaceae in the study area: Aspicarpa harleyi W.R.Anderson, Banisteriopsis C.B.Rob. (3 spp.), Barnebya harleyi W.R.Anderson & B.Gates, Bronwenia ferruginea (Cav.) W.R.Anderson & C.C.Davis, Bunchosia pernambucana W.R.Anderson, Byrsonima Rich. ex Kunth (4 spp.), Carolus chasei (W.R.Anderson) W.R.Anderson, Diplopterys lutea (Griseb.) W.R.Anderson & C.C.Davis, Galphimia brasiliensis (L.) A.Juss., Heteropterys Kunth (5 spp.), Janusia anisandra (A.Juss.) Griseb., Mascagnia Bertero (2 spp.), Mcvaughia bahiana W.R.Anderson, Peixotoa hispidula A.Juss., Ptilochaeta Turcz. (2 spp.), Stigmaphyllon A.Juss. (3 spp.), Tetrapterys Cav. (2 spp.) and Thryallis longifolia Mart. Among the species recorded, three represent new records for the Caatinga biome, 25 are endemic to Brazil, and six are exclusive to the Caatinga. We present an identification key to all species, comments on morphology, taxonomy, distribution and phenology, besides illustrations to most species.
DOI: 10.6084/m9.figshare.6693311.v1
title: Malpighiaceae in the Raso da Catarina Ecoregion, Bahia, Brazil

description: Abstract This study presents a floristic survey of Malpighiaceae species from in the Raso da Catarina Ecoregion in the state of Bahia, Brazil. After extensive field and herbarium studies, we identified 18 genera and 32 species of Malpighiaceae in the study area: Aspicarpa harleyi W.R.Anderson, Banisteriopsis C.B.Rob. (3 spp.), Barnebya harleyi W.R.Anderson & B.Gates, Bronwenia ferruginea (Cav.) W.R.Anderson & C.C.Davis, Bunchosia pernambucana W.R.Anderson, Byrsonima Rich. ex Kunth (4 spp.), Carolus chasei (W.R.Anderson) W.R.Anderson, Diplopterys lutea (Griseb.) W.R.Anderson & C.C.Davis, Galphimia brasiliensis (L.) A.Juss., Heteropterys Kunth (5 spp.), Janusia anisandra (A.Juss.) Griseb., Mascagnia Bertero (2 spp.), Mcvaughia bahiana W.R.Anderson, Peixotoa hispidula A.Juss., Ptilochaeta Turcz. (2 spp.), Stigmaphyllon A.Juss. (3 spp.), Tetrapterys Cav. (2 spp.) and Thryallis longifolia Mart. Among the species recorded, three represent new records for the Caatinga biome, 25 are endemic to Brazil, and six are exclusive to the Caatinga. We present an identification key to all species, comments on morphology, taxonomy, distribution and phenology, besides illustrations to most species.
DOI: 10.6084/m9.figshare.6693305
title: Cupriavidus necator strains: zinc and cadmium tolerance and bioaccumulation

description: ABSTRACT: Among soil microorganisms, the genus Cupriavidus has garnered particular scientific, economic and ecological interest because of its ability to fix nitrogen and tolerate high concentrations of metals. The aim of this study was to analyze four strains of Cupriavidus necator for their ability to tolerate and bioaccumulate cadmium and zinc. The tolerance of these strains to these metals was assessed in liquid culture medium containing different concentrations of Zn + Cd and in soil solutions and soils contaminated with multiple elements including Zn, Cd, Cu and Pb. The four strains showed high tolerance to Zn and Cd, both in culture medium and when inoculated into contaminated soil solutions or multi-element contaminated soil. The UFLA02-71 strain displayed the highest ability to bioaccumulate these metals. It was able to accumulate 93.76 µmol g cell−1 of Zn and 16.03 µmol g cell−1 of Cd when cultured in liquid medium with a total heavy metal concentration of 9,140 µmol L−1 (9,000 Zn + 140 Cd) and was able to accumulate 16.98 µmol g cell−1 of Cd in the soil solution. An increase in the pH of the culture medium resulting from the growth of the C. necator strains reduced the Zn2+ and Cd2+ ions in the medium and increased the concentrations of the ZnHPO4 and CdHPO4 species in solution. Thus, we concluded that they show great potential for use in the bioremediation of HM-contaminated areas.
DOI: 10.6084/m9.figshare.6693305.v1
title: Cupriavidus necator strains: zinc and cadmium tolerance and bioaccumulation

description: ABSTRACT: Among soil microorganisms, the genus Cupriavidus has garnered particular scientific, economic and ecological interest because of its ability to fix nitrogen and tolerate high concentrations of metals. The aim of this study was to analyze four strains of Cupriavidus necator for their ability to tolerate and bioaccumulate cadmium and zinc. The tolerance of these strains to these metals was assessed in liquid culture medium containing different concentrations of Zn + Cd and in soil solutions and soils contaminated with multiple elements including Zn, Cd, Cu and Pb. The four strains showed high tolerance to Zn and Cd, both in culture medium and when inoculated into contaminated soil solutions or multi-element contaminated soil. The UFLA02-71 strain displayed the highest ability to bioaccumulate these metals. It was able to accumulate 93.76 µmol g cell−1 of Zn and 16.03 µmol g cell−1 of Cd when cultured in liquid medium with a total heavy metal concentration of 9,140 µmol L−1 (9,000 Zn + 140 Cd) and was able to accumulate 16.98 µmol g cell−1 of Cd in the soil solution. An increase in the pH of the culture medium resulting from the growth of the C. necator strains reduced the Zn2+ and Cd2+ ions in the medium and increased the concentrations of the ZnHPO4 and CdHPO4 species in solution. Thus, we concluded that they show great potential for use in the bioremediation of HM-contaminated areas.
DOI: 10.6084/m9.figshare.6693296
title: Agronomic biofortification of carrot with selenium

description: ABSTRACT The selenium (Se) is essential for human metabolism, but a large part of the world’s population has deficiency in this element. This can be reversed by the consumption of biofortified foods, given that plants can efficiently act in controlling excessive and/or accidental consumption of an element that can occur in humans through the use of dietary supplements. The objective of this study was to evaluate the effect of different application forms and sources of Se in the growth, production, nutrition, physical-chemical characteristics, content and accumulation of Se in carrots. The experiment was conducted under greenhouse conditions, using pots containing 4 dm3 of Red-yellow Latosol. A completely randomized design was used in a 2x2x2 factorial scheme (with and without Se application, two sources of Se: selenate and selenite, two forms of application of Se: soil and foliar applications), with five replicates. Foliar application of selenate increased the yield and titratable acidity, reducing root ripening index. Foliar application of selenite increased the content of Se in the shoots and the content of carotenoids in the roots. Both sources of Se (selenate and selenite) and application forms (soil or foliar application) increased their content in the roots. However, the foliar application of selenate was the most effective source and form of application. Therefore, it is possible to increase the contents of Se in the edible part of carrots, favoring the consumption of this element by the population.