cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16414468
title: Giant endogenous viral elements in the genome of the model protist Euglena gracilis reveal past interactions with giant viruses

description: This is the data availability repository for the paper.

It contains the supplementary dataset, supplementary figures and the BAM file used for methylation calling.

For generating the BAM file, the nanopore .pod5 files were basecalled and mapped to the Euglena genome assembly on NCBI. For detailed methods, see methods section in the paper. 

Supplementary figure information:

S1: Histogram of GC% of GEVEs (blue) with mean at 32% and a 200 Kbp window of Euglena gracilis (red) with mean at 47%. P-value < 0.005

S2: BLAST dotplot of CP83_f against itself showing duplications in the central 80 Kbp region

S3: All vs all AAI matrix of Euglena GEVE, Rhizophagus GEVE, Elysia marginata viral region, and isolates in the order of Asfuvirales

S4: Heatmap showing screening of 95 publicly available transcriptomes against all Euglena GEVE proteins

S5: Distribution of hits against recombinases expressed in the transcriptome of the Euglena GEVEs across the Euglena genome

S6: Mapped reads from 48 freshwater metagenomes across CP92_2 GEVE with 100 kb flanking region

 

Supplementary Dataset information:

Dataset 1: eggnog_annotations

Dataset 2: HHPred_predictions
DOI: 10.15468/dl.v353c2
title: Occurrence Download

description: A dataset containing 680 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thalictrum przewalskii"
 ]
}

 The dataset includes 680 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040745-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47uj4n
title: Occurrence Download

description: A dataset containing 1835 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchosia totta"
 ]
}

 The dataset includes 1835 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040744-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7qfrs
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solenopsis geminata",
 "Country is Malaysia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040747-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nv54e
title: Occurrence Download

description: A dataset containing 54336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((16.155706496492538 47.96923312200386, 16.135341559493092 47.80020940103521, 16.384195030136766 47.785970027648986, 16.40537556318282 47.95493935428685, 16.155706496492538 47.96923312200386))"
 ]
}

 The dataset includes 54336 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040698-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zf4sw4
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senecio leucanthemifolius",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040746-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22qhfe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solenopsis geminata",
 "Country is Marshall Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040748-250717081556266/datasets/export for details.
DOI: 10.5281/zenodo.16414386
title: Synthetic Image Dataset of Five Object Classes Generated Using Stable Diffusion XL

description: This dataset contains 500 synthetic images generated via prompt-based text-to-image diffusion modeling using Stable Diffusion XL. Each image belongs to one of five classes: cat, dog, horse, car, and tree.
DOI: 10.5281/zenodo.16414387
title: Synthetic Image Dataset of Five Object Classes Generated Using Stable Diffusion XL

description: This dataset contains 500 synthetic images generated via prompt-based text-to-image diffusion modeling using Stable Diffusion XL. Each image belongs to one of five classes: cat, dog, horse, car, and tree.
DOI: 10.15468/dl.rpyn3d
title: Occurrence Download

description: A dataset containing 834 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thermopsis alpina"
 ]
}

 The dataset includes 834 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040749-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7c2dbf
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Austrocylindropuntia subulata",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 73 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040750-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pzdm9r
title: Occurrence Download

description: A dataset containing 449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Austrocylindropuntia subulata",
 "Country is Kenya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 449 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040751-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16414454
title: Wiregrass (Aristida beyrichiana) seedling emergence dataset

description: Data for non- and semi-parametric time to event analyses and logistic regression of wiregrass seedling emergence and total normal seedling production.
DOI: 10.5281/zenodo.16414455
title: Wiregrass (Aristida beyrichiana) seedling emergence dataset

description: Data for non- and semi-parametric time to event analyses and logistic regression of wiregrass seedling emergence and total normal seedling production.
DOI: 10.15468/dl.9zczg8
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Galeocharax humeralis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 99 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040754-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29640338
title: metabolomics_batch_normalized_data.csv

description: Placental metabolites were analyzed by Metabolon (Morrisville, NC) using the Global Metabolomics platform. Metabolon’s informatics system was used for data extraction and peak identification, compound identification and quantification, curation, and data normalization. Samples were randomized across several batches and processed with pooled quality-control samples in each batch.Placental biopsies were obtained from the Steve N. Caritis Magee Obstetric Maternal and Infant (MOMI) Database and Biobank at Magee-Womens Research Institute and the Health Record Research Request Service at the University of Pittsburgh. Samples were biobanked from 2010-2019 and had placental histopathological analyses conducted by a condition-blinded pathologist. We included placentas obtained from people ages 15-45 delivering singleton live births between 23-42 weeks of gestation. Placentas were obtained from women with the following conditions: control (delivery after 37 weeks of gestation with no complications), control preterm delivery (control PTD; induced delivery before 37 weeks of gestation with no further complications), spontaneous preterm delivery (PTD), severe preeclampsia (PE), and severe fetal growth restriction (FGR, bottom 3rd percentile for weight by gestational age at delivery) with and without hypertension.
DOI: 10.6084/m9.figshare.29640338.v1
title: metabolomics_batch_normalized_data.csv

description: Placental metabolites were analyzed by Metabolon (Morrisville, NC) using the Global Metabolomics platform. Metabolon’s informatics system was used for data extraction and peak identification, compound identification and quantification, curation, and data normalization. Samples were randomized across several batches and processed with pooled quality-control samples in each batch.Placental biopsies were obtained from the Steve N. Caritis Magee Obstetric Maternal and Infant (MOMI) Database and Biobank at Magee-Womens Research Institute and the Health Record Research Request Service at the University of Pittsburgh. Samples were biobanked from 2010-2019 and had placental histopathological analyses conducted by a condition-blinded pathologist. We included placentas obtained from people ages 15-45 delivering singleton live births between 23-42 weeks of gestation. Placentas were obtained from women with the following conditions: control (delivery after 37 weeks of gestation with no complications), control preterm delivery (control PTD; induced delivery before 37 weeks of gestation with no further complications), spontaneous preterm delivery (PTD), severe preeclampsia (PE), and severe fetal growth restriction (FGR, bottom 3rd percentile for weight by gestational age at delivery) with and without hypertension.
DOI: 10.15468/dl.zpqp7h
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zinnia elegans",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040752-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16414520
title: 102-almost-recognized.docx
DOI: 10.5281/zenodo.16414521
title: 102-almost-recognized.docx
DOI: 10.5883/bold:afr6060
title: Overview of Barcode Index Number - BOLD:AFR6060

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.15468/dl.m2s2vg
title: Occurrence Download

description: A dataset containing 3560 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thermopsis lanceolata"
 ]
}

 The dataset includes 3560 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040755-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ar4ew
title: Occurrence Download

description: A dataset containing 2310 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchospora consanguinea"
 ]
}

 The dataset includes 2310 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040756-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apf9rq
title: Occurrence Download

description: A dataset containing 877 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senecio sarracenicus",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 877 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040758-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6nkpdu
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solenopsis geminata",
 "Country is Papua New Guinea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040760-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9dhn6m
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solenopsis geminata",
 "Country is Myanmar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040759-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.paszgt
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-88.55537 -43.52836,-58.44463 -43.52836,-58.44463 -31.47164,-88.55537 -31.47164,-88.55537 -43.52836))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sadocus ingens"
 ]
}

 The dataset includes 18 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040762-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2cg4y
title: Occurrence Download

description: A dataset containing 3636 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Malus domestica"
 ]
}

 The dataset includes 3636 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040761-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15621463
title: Field-Scale Cropland and Paddy Area Maps for Bhutan (2002–2024) Produced Using the Farm Action Toolkit (FAcT)

description: This dataset provides annual, field-scale cropland and paddy extent maps for Bhutan from 2002 to 2024, developed using the Farm Action Toolkit (FAcT)—an open-access, satellite-based monitoring system designed to support agricultural decision-making in data-scarce, mountainous regions. The maps were generated from Landsat time-series imagery using a phenology-guided classification framework implemented on Google Earth Engine, combined with ground reference data and expert input from Bhutanese stakeholders.

These data products offer the first consistent, multi-year spatial assessment of cropland and rice dynamics across Bhutan, enabling analysis of land-use transitions, agricultural trends, and policy impacts over two decades. They directly support Bhutan’s Five-Year Strategic Plans and Sustainable Development Goals (SDGs), providing actionable insights for food security, land management, and climate resilience planning.

The dataset accompanies the research article in development. Table details are:





Table 1: Relevance of Agricultural Policy Changes from Bhutan’s Five-Year Plans to Land-Use Dynamics Derived from the Farm Action Toolkit[This table outlines the alignment between Bhutan’s Five-Year Plans and FAcT-estimated cropland and paddy area dynamics (2002–2024), offering a data-driven perspective on how policies have influenced food security, climate resilience, and land management.]




Table 2a & 2b: Spatiotemporal Dynamics of Cropland and Paddy Area in Bhutan (2002–2024): District-Wise Trends, Net Change, and Percentage of Total Land Area[This table presents the temporal dynamics of cropland and paddy area extent across Bhutan’s districts from 2002 to 2024, highlighting expansion, stability, and contraction patterns. For example, Zhemgang district shows values of 13,933 ha (2002) to 14,305 ha (2024).]




Table 3: District-Level Trends in Cropland Net Primary Productivity (NPP) in Bhutan (2002–2021)[This table details cropland NPP (kgC/m²) trends across Bhutanese districts, revealing spatial and temporal variations critical for sustainable intensification and climate-resilient agricultural policies.]




Table 4: Accuracy Assessment and Validation of Cropland and Paddy Area Mapping in Bhutan (2002–2024)[This table includes overall classification accuracy, user’s and producer’s accuracy, kappa statistics, and validation metrics (R² and RMSE) comparing FAcT estimates with government statistics and regional land cover datasets.]



For full reproducibility, all preprocessing and classification code is available at:https://github.com/aparnaphalke/Farm-Action-Toolkit-FAcT-

An interactive visualization dashboard is available at:https://crops.servirglobal.net/
DOI: 10.5281/zenodo.16414367
title: Field-Scale Cropland and Paddy Area Maps for Bhutan (2002–2024) Produced Using the Farm Action Toolkit (FAcT)

description: This dataset provides annual, field-scale cropland and paddy extent maps for Bhutan from 2002 to 2024, developed using the Farm Action Toolkit (FAcT)—an open-access, satellite-based monitoring system designed to support agricultural decision-making in data-scarce, mountainous regions. The maps were generated from Landsat time-series imagery using a phenology-guided classification framework implemented on Google Earth Engine, combined with ground reference data and expert input from Bhutanese stakeholders.

These data products offer the first consistent, multi-year spatial assessment of cropland and rice dynamics across Bhutan, enabling analysis of land-use transitions, agricultural trends, and policy impacts over two decades. They directly support Bhutan’s Five-Year Strategic Plans and Sustainable Development Goals (SDGs), providing actionable insights for food security, land management, and climate resilience planning.

The dataset accompanies the research article in development. Table details are:





Table 1: Relevance of Agricultural Policy Changes from Bhutan’s Five-Year Plans to Land-Use Dynamics Derived from the Farm Action Toolkit[This table outlines the alignment between Bhutan’s Five-Year Plans and FAcT-estimated cropland and paddy area dynamics (2002–2024), offering a data-driven perspective on how policies have influenced food security, climate resilience, and land management.]




Table 2a & 2b: Spatiotemporal Dynamics of Cropland and Paddy Area in Bhutan (2002–2024): District-Wise Trends, Net Change, and Percentage of Total Land Area[This table presents the temporal dynamics of cropland and paddy area extent across Bhutan’s districts from 2002 to 2024, highlighting expansion, stability, and contraction patterns. For example, Zhemgang district shows values of 13,933 ha (2002) to 14,305 ha (2024).]




Table 3: District-Level Trends in Cropland Net Primary Productivity (NPP) in Bhutan (2002–2021)[This table details cropland NPP (kgC/m²) trends across Bhutanese districts, revealing spatial and temporal variations critical for sustainable intensification and climate-resilient agricultural policies.]




Table 4: Accuracy Assessment and Validation of Cropland and Paddy Area Mapping in Bhutan (2002–2024)[This table includes overall classification accuracy, user’s and producer’s accuracy, kappa statistics, and validation metrics (R² and RMSE) comparing FAcT estimates with government statistics and regional land cover datasets.]



For full reproducibility, all preprocessing and classification code is available at:https://github.com/aparnaphalke/Farm-Action-Toolkit-FAcT-

An interactive visualization dashboard is available at:https://crops.servirglobal.net/
DOI: 10.15468/dl.snfq5y
title: Occurrence Download

description: A dataset containing 647 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thunbergia coccinea"
 ]
}

 The dataset includes 647 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040763-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfejn9
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Melitaea phoebe"
 ]
}

 The dataset includes 237 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040764-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkheuq
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zinnia elegans",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 120 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040765-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1106989
title: Digital Archive from an Archaeological Excavation at Quedgeley East, Haresfield, Gloucestershire, 2019

description: This collection comprises the site photographs, GIS data, and the project database from an archaeological excavation, undertaken by Cotswold Archaeology, at the request of St Modwen Ltd, on land at Quedgeley East, Haresfield, Gloucestershire, between January and May 2019.
DOI: 10.15468/dl.gyj7qn
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Geophagus gottwaldi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040766-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9rt7a
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Austrocylindropuntia subulata",
 "Country is Uganda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040769-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.