cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15640228
title: ERGA-BGE genome of Stigmatoteuthis arcturi Robson, 1948: the jewelled squid Supporting Data

description: The following files were used to generate statistics, tables and figures in the genome report: "ERGA-BGE genome of Stigmatoteuthis arcturi Robson, 1948: the jewelled squid"

 

assembly_busco.txt was used to report completeness of the genome assembly

annotation_busco.txt and annotation_omark.txt were used to report completeness and consistency of the genome annotation

assembly_stats.txt and annotation_stats.txt were used to report basic statistics about the genome assembly and annotation, respectively

merqury_completeness.txt and merqury_qv.txt were used to report completeness and accuracy of the genome assembly, respectively

blobdir.tgz was used to generate Figure 1

hic.cool was used to generate Figure 2
DOI: 10.15468/dl.3xfqm9
title: Occurrence Download

description: A dataset containing 695274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is AD AVH Data",
 "TaxonKey is Plantae",
 "HasCoordinate is true",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Coordinate uncertainty meters invalid"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Presumed swapped coordinate"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Presumed negated longitude"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Presumed negated latitude"
 ]
 }
 }
 ]
}

 The dataset includes 695274 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042616-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfeq9z
title: Occurrence Download

description: A dataset containing 1233 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'TV'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence."year" &gt;= 2000 AND occurrence."year" &lt;= 2025)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 1233 records were derived from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042617-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35czcw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Closterium lineatum Ehrenberg ex Ralfs, 1848",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((31.8862 -21.3285,30.5701 -20.3186,30.5701 -24.0715,35.5909 -24.0715,35.6007 -24.0157,35.6007 -23.8125,35.4969 -23.7035,35.6007 -23.165,35.6007 -22.9702,35.227 -22.2482,34.6862 -21.6944,34.013 -21.3095,33.5 -21.1593,32.9675 -21.1092,32.4352 -21.1612,31.8862 -21.3285))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042625-250525065834625/datasets/export for details.
DOI: 10.15468/dl.stu7p5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gnaphalium austroafricanum Hilliard",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042626-250525065834625/datasets/export for details.
DOI: 10.15468/dl.q8pe56
title: Occurrence Download

description: A dataset containing 6635 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pelobates fuscus (Laurenti, 1768))",
 "Year is not null",
 "Year is one of (2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023)",
 "HasCoordinate is TRUE",
 "DecimalLatitude is greater than or equal to 44.95782311925129",
 "DecimalLatitude is less than or equal to 58.30331634439415",
 "DecimalLongitude is greater than or equal to -10.001896207643075",
 "DecimalLongitude is less than or equal to 30.31691447027875",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 6635 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042627-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ptqmdf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Closterium lineatum Ehrenberg ex Ralfs, 1848",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042628-250525065834625/datasets/export for details.
DOI: 10.15468/dl.myfy9d
title: Occurrence Download

description: A dataset containing 348 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chrysina resplendens (Boucard, 1875)"
 ]
}

 The dataset includes 348 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042629-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u952bq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gnaphalium austroafricanum Hilliard",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.4784 -23.4046,15.4933 -24.0715,20.509 -24.0715,20.509 -24.0455,20.0952 -23.5072,19.9968 -23.017,19.7843 -22.5405,19.1988 -21.8785,18.5972 -21.5447,17.8859 -21.3993,17.1626 -21.4805,16.5332 -21.7596,16.1257 -22.0882,15.8234 -22.4662,15.606 -22.8993,15.4784 -23.4046))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042630-250525065834625/datasets/export for details.
DOI: 10.15468/dl.cxwd6r
title: Occurrence Download

description: A dataset containing 12213 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'PW'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence."year" &gt;= 2000 AND occurrence."year" &lt;= 2025)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 12213 records were derived from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042614-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eh9fb9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Closterium lineatum Ehrenberg ex Ralfs, 1848",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042631-250525065834625/datasets/export for details.
DOI: 10.15468/dl.qqb6x8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gnaphalium austroafricanum Hilliard",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -28.5786,20.509 -28.5786,20.509 -32.9007,25.5395 -32.9007,25.5395 -28.5786))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042632-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15655575
title: The HIFI raw data of 10Gb of sequenced snap beans
DOI: 10.5281/zenodo.15655576
title: The HIFI raw data of 10Gb of sequenced snap beans
DOI: 10.15468/dl.xmvfuw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Closterium lineatum Ehrenberg ex Ralfs, 1848",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042635-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15655584
title: Field campaign observation data for 'Impacts of Heatwaves on Characteristics of Atmospheric Methylglyoxal in a Suburban Area in Eastern China'
DOI: 10.5284/1132569
title: Site Images from an Archaeological Evaluation at Goulden's View, Norton, Northamptonshire, November 2019

description: This collection consists of images from an archaeological evaluation at Goulden's View, Norton, Northamptonshire, conducted by University of Leicester Archaeological Services (ULAS) in November 2019 in advance of the proposed development of the land for twelve new dwellings. Ridge and furrow earthworks were located within all six evaluation trenches, running broadly north-east to south-west across the site, mirroring those identified on the surface. Two possible archaeological features were revealed during the evaluation, but further work showed them to be natural in origin.
DOI: 10.15468/dl.963myk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gnaphalium austroafricanum Hilliard",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.7576 -24.3688,20.529 -24.0715,20.509 -24.0715,20.509 -28.5786,25.5395 -28.5786,25.5395 -24.0715,25.1306 -24.0715,24.9333 -24.4571,23.8962 -24.2467,22.8065 -24.295,22.3719 -24.7207,22.2323 -25.547,22.0387 -25.7188,21.7833 -25.7784,21.5388 -25.7113,21.3553 -25.5415,20.7576 -24.3688))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042636-250525065834625/datasets/export for details.
DOI: 10.15468/dl.xn6tkg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Closterium lineatum Ehrenberg ex Ralfs, 1848",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.4784 -23.4046,15.4933 -24.0715,20.509 -24.0715,20.509 -24.0455,20.0952 -23.5072,19.9968 -23.017,19.7843 -22.5405,19.1988 -21.8785,18.5972 -21.5447,17.8859 -21.3993,17.1626 -21.4805,16.5332 -21.7596,16.1257 -22.0882,15.8234 -22.4662,15.606 -22.8993,15.4784 -23.4046))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042637-250525065834625/datasets/export for details.
DOI: 10.34740/kaggle/dsv/12152988
title: e-IPO Indonesia Data - Investment
DOI: 10.5281/zenodo.13253813
title: Field campaign observation data for 'Impacts of Heatwaves on Characteristics of Atmospheric Methylglyoxal in a Suburban Area in Eastern China'
DOI: 10.5281/zenodo.13253814
title: Field campaign observation data for 'Impacts of Heatwaves on Characteristics of Atmospheric Methylglyoxal in a Suburban Area in Eastern China'

description: For the complete data, please visit: 

10.5281/zenodo.15655584
DOI: 10.15468/dl.rnkzhw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gnaphalium austroafricanum Hilliard",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.529 -24.0715,20.509 -24.0455,20.509 -24.0715,20.529 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042638-250525065834625/datasets/export for details.
DOI: 10.25625/fxeaei/lwnnwe
title: Questionnaire_HH_FE.pdf

description: This file contains the household and food environment questionnaire.
DOI: 10.25625/fxeaei
title: Survey Instruments

description: Household and food environment questionnaires
DOI: 10.15468/dl.rrckvp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Closterium lineatum Ehrenberg ex Ralfs, 1848",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -28.5786,20.509 -28.5786,20.509 -32.9007,25.5395 -32.9007,25.5395 -28.5786))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042639-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15264865
title: Contextual modulation and blunted defensive responses to predators in head-fixed and freely moving mice

description: Abstract

Behavioral responses to threats — such as fleeing, freezing, or fighting — can be either innate or shaped by learning and context. Here, we investigated whether mice exhibit fear of predators across four experimental contexts: one in a novel head-fixed condition and three in established, freely moving scenarios. In head-fixed mice, we measured the behavioral outcome and response to a live rat. Mice were water-deprived and habituated to walk on a treadmill that controlled a virtual environment and reward delivery. After meeting performance criteria, baseline data were collected in one session, followed by a test session in which the mice were exposed to a live rat. Despite the presence of the predator, most (5 out of 7) mice continued to forage at baseline levels; however, individual mice showed significant alterations in one or more of the following measures: running speed, pupil size, eye movement, and posture. To assess how behavioral context and physical restraint influence predator responses, we exposed 36 naive, freely moving mice to fear-inducing stimuli — including looming visual cues, rat odor, and a live rat. Even in these conditions, a substantial proportion of mice failed to exhibit classical defensive responses such as avoidance or escape. Notably, when presented with a freely moving rat, only about half of the mice displayed avoidance behavior. Together, these findings suggest that mice do not universally express innate fear behaviors such as avoidance or fleeing, even in ethologically relevant predator encounters. Instead, their responses appear to be context-dependent and variable, challenging common assumptions about automatic defensive reactions in rodents.

Related files

The preprint can be found at biorxiv.org/content/10.1101/2025.06.09.658679.

 

The code used to generate the figures shown in the preprint based on this data can be found at github.com/Marti-Ritter/contextual-modulation-and-blunted-defensive-responses-to-predators. This data needs to be downloaded and all subdirectories unpacked, then the root_dir variable at the top of each notebook needs to be set to the path of the data directory.

 

Extended data and code are available on request.
DOI: 10.5281/zenodo.15264864
title: Contextual modulation and blunted defensive responses to predators in head-fixed and freely moving mice

description: Abstract

Behavioral responses to threats — such as fleeing, freezing, or fighting — can be either innate or shaped by learning and context. Here, we investigated whether mice exhibit fear of predators across four experimental contexts: one in a novel head-fixed condition and three in established, freely moving scenarios. In head-fixed mice, we measured the behavioral outcome and response to a live rat. Mice were water-deprived and habituated to walk on a treadmill that controlled a virtual environment and reward delivery. After meeting performance criteria, baseline data were collected in one session, followed by a test session in which the mice were exposed to a live rat. Despite the presence of the predator, most (5 out of 7) mice continued to forage at baseline levels; however, individual mice showed significant alterations in one or more of the following measures: running speed, pupil size, eye movement, and posture. To assess how behavioral context and physical restraint influence predator responses, we exposed 36 naive, freely moving mice to fear-inducing stimuli — including looming visual cues, rat odor, and a live rat. Even in these conditions, a substantial proportion of mice failed to exhibit classical defensive responses such as avoidance or escape. Notably, when presented with a freely moving rat, only about half of the mice displayed avoidance behavior. Together, these findings suggest that mice do not universally express innate fear behaviors such as avoidance or fleeing, even in ethologically relevant predator encounters. Instead, their responses appear to be context-dependent and variable, challenging common assumptions about automatic defensive reactions in rodents.

Related files

The preprint can be found at biorxiv.org/content/10.1101/2025.06.09.658679.

 

The code used to generate the figures shown in the preprint based on this data can be found at github.com/Marti-Ritter/contextual-modulation-and-blunted-defensive-responses-to-predators. This data needs to be downloaded and all subdirectories unpacked, then the root_dir variable at the top of each notebook needs to be set to the path of the data directory.

 

Extended data and code are available on request.
DOI: 10.15468/dl.8nnwps
title: Occurrence Download

description: A dataset containing 1207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Grus nigricollis Prjevalsky, 1876",
 "Year 2010-2024"
 ]
}

 The dataset includes 1207 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042641-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.