cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7956725
title: Mount Carmel - National park - Flickr data

description: Flickr dataset retrieved from Mount Carmel National Park and coded into Cultural Ecosystem Services (CES) following the standard protocol (version 5) published at this link.
DOI: 10.5281/zenodo.7140355
title: Data source and projections of maintenance energy gaps for "The caloric reduction needed to achieve the obesity goals by 2030 and 2040: a modeling study"

description: Old data
DOI: 10.6084/m9.figshare.21572874
title: Soelistijo2022_Lipid ratios & ba-PWV data.xlsx

description: The data from <strong>"The performance of lipid profiles and ratios as a predictor of arterial stiffness measured by brachial-ankle pulse wave velocity in type 2 diabetic patients"</strong> study and the STROBE checklist
DOI: 10.6084/m9.figshare.21572874.v2
title: Soelistijo2022_Lipid ratios & ba-PWV data.xlsx

description: The data from <strong>"The performance of lipid profiles and ratios as a predictor of arterial stiffness measured by brachial-ankle pulse wave velocity in type 2 diabetic patients"</strong> study and the STROBE checklist
DOI: 10.6084/m9.figshare.21572874.v3
title: Soelistijo2022_Lipid ratios & ba-PWV data.xlsx

description: The data from <strong>"The performance of lipid profiles and ratios as a predictor of arterial stiffness measured by brachial-ankle pulse wave velocity in type 2 diabetic patients"</strong> study and the STROBE checklist
DOI: 10.26180/6964310
title: Koch_etal_EE_data.csv

description: For details, see upcoming publication authored by Koch, Phillips, Camus, and Dowling, accepted in the journal Ecology and Evolution.<br>
DOI: 10.6084/m9.figshare.23269763
title: The flow field characteristic data of decoupling burner.xlsx

description: A three-dimensional numerical simulation is employed to analyze and optimize the geometrical parameters of a burner applied in a real 300 MW pulverized coal fired boiler. Detailed analysis of the burner’s decoupling combustion characteristics, including stable combustion ability and NOx reduction principles, is conducted.
DOI: 10.6084/m9.figshare.23269763.v1
title: The flow field characteristic data of decoupling burner.xlsx

description: A three-dimensional numerical simulation is employed to analyze and optimize the geometrical parameters of a burner applied in a real 300 MW pulverized coal fired boiler. Detailed analysis of the burner’s decoupling combustion characteristics, including stable combustion ability and NOx reduction principles, is conducted.
DOI: 10.5281/zenodo.7991578
title: Reproducibility use cases from ORKG

description: The dataset offers a selection of use cases from ORKG that serve as noteworthy examples for the reproducibility score. We previously showcased the concept of the reproducibility score during the inaugural symposium organized by The German Reproducibility Network (GRN). For detailed information, please refer to our presentation, accessible through the following link. <strong>How to use:</strong> The column "Paper ID" corresponds to a resolve paper within ORKG. To reach the specific resource, please navigate to the following URL: https://orkg.org/paper/XXX/ , where you should replace the "XXX" with the actual Paper ID. The column "Research Field" symbolizes the domain to which the paper is assigned. The column "Template ID" functions likewise to the "Paper ID," but in this case, you will need to visit the URL: https://orkg.org/template/XXX/ and replace the "XXX" accordingly. Please be aware that a single paper may have multiple templates associated with it.
DOI: 10.5281/zenodo.7991577
title: Reproducibility use cases from ORKG

description: The dataset offers a selection of use cases from ORKG that serve as noteworthy examples for the reproducibility score. We previously showcased the concept of the reproducibility score during the inaugural symposium organized by The German Reproducibility Network (GRN). For detailed information, please refer to our presentation, accessible through the following link. <strong>How to use:</strong> The column "Paper ID" corresponds to a resolve paper within ORKG. To reach the specific resource, please navigate to the following URL: https://orkg.org/paper/XXX/ , where you should replace the "XXX" with the actual Paper ID. The column "Research Field" symbolizes the domain to which the paper is assigned. The column "Template ID" functions likewise to the "Paper ID," but in this case, you will need to visit the URL: https://orkg.org/template/XXX/ and replace the "XXX" accordingly. Please be aware that a single paper may have multiple templates associated with it.
DOI: 10.57745/59dya9
title: FOR_WP2.1_SLR meta-analysis_VF.tab

description: :unav
DOI: 10.5281/zenodo.7829622
title: Data to reproduce analysis in "Systematic analysis of transcriptional and epigenetic effects of genetic variation in Kupffer cells enables discrimination of cell intrinsic and environment-dependent mechanisms"

description: Here you can find the datasets necessary to reproduce all analyses described in the Glass lab paper by Bennett et al. The python and R code for reproducing analysis and figures can be found on our linked github repository. Briefly, this paper explores the effect of natural genetic variation <em>in vivo</em>, using Kupffer cells as a model cell type. We collect and analyze transcriptional and epigenetic data (ATAC-seq, H3K27Ac ChIP-seq) to identify putative <em>trans</em> regulators driving differential gene expression across inbred strains of mice. Additionally, we provide evidence that <em>trans</em> effects control a majority of strain differential genes at homeostasis while <em>cis</em> effects dominate the transcriptional response to an external signal (lipopolysaccharide). References: Hunter Bennett, Ty D. Troutman, Enchen Zhou, Nathanael J. Spann, Verena M. Link, Jason S. Seidman, Christian K. Nickl, Yohei Abe, Mashito Sakai, Martina P. Pasillas, Justin M. Marlman, Carlos Guzman, Mojgan Hosseini, Bernd Schnabl, Christopher K. Glass bioRxiv 2022.09.22.509046; doi: https://doi.org/10.1101/2022.09.22.509046
DOI: 10.5281/zenodo.7829621
title: Data to reproduce analysis in "Systematic analysis of transcriptional and epigenetic effects of genetic variation in Kupffer cells enables discrimination of cell intrinsic and environment-dependent mechanisms"

description: Here you can find the datasets necessary to reproduce all analyses described in the Glass lab paper by Bennett et al. The python and R code for reproducing analysis and figures can be found on our linked github repository. Briefly, this paper explores the effect of natural genetic variation <em>in vivo</em>, using Kupffer cells as a model cell type. We collect and analyze transcriptional and epigenetic data (ATAC-seq, H3K27Ac ChIP-seq) to identify putative <em>trans</em> regulators driving differential gene expression across inbred strains of mice. Additionally, we provide evidence that <em>trans</em> effects control a majority of strain differential genes at homeostasis while <em>cis</em> effects dominate the transcriptional response to an external signal (lipopolysaccharide). References: Hunter Bennett, Ty D. Troutman, Enchen Zhou, Nathanael J. Spann, Verena M. Link, Jason S. Seidman, Christian K. Nickl, Yohei Abe, Mashito Sakai, Martina P. Pasillas, Justin M. Marlman, Carlos Guzman, Mojgan Hosseini, Bernd Schnabl, Christopher K. Glass bioRxiv 2022.09.22.509046; doi: https://doi.org/10.1101/2022.09.22.509046
DOI: 10.5517/ccdc.csd.cc2dm7ny
title: CCDC 2223030: Experimental Crystal Structure Determination

description: Related Article: Li Jing, Zhong-Jun Li, Er-Qing Li|2023|Org.Chem.Front.|10|2746|doi:10.1039/D3QO00362K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bt9r7
title: CCDC 2169279: Experimental Crystal Structure Determination

description: Related Article: E. Bartolomé, A. Arauzo, S. Fuertes, L. Navarro-Spreafica, P. Sevilla, H. Fernández Cortés, N. Settineri, S. J. Teat, E. C. Sañudo|2023|Dalton Trans.|52|7258|doi:10.1039/D3DT00367A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25345/c5qn5zn4h
title: MassIVE MSV000092063 - Data files for site specific S-acylation
title: Raw data files for site specific S-acylation identification.
DOI: 10.6084/m9.figshare.23269553
title: Volatile Characterization of Lychee

description: Data set from the article: "Volatile Characterization of Lychee Plant Tissues (<em>Litchi</em> <em>chinensis</em>) and the Effect of Key Compounds on the Behavior of the Lychee Erinose Mite (<em>Aceria</em> <em>litchii</em>)"
DOI: 10.6084/m9.figshare.23269553.v1
title: Volatile Characterization of Lychee

description: Data set from the article: "Volatile Characterization of Lychee Plant Tissues (<em>Litchi</em> <em>chinensis</em>) and the Effect of Key Compounds on the Behavior of the Lychee Erinose Mite (<em>Aceria</em> <em>litchii</em>)"
DOI: 10.58153/q1byv-qc065
title: StreetAware: A High-Resolution Synchronized Multimodal Urban Scene Dataset

description: Access to high-quality data is an important barrier in the digital analysis of urban settings, including applications within computer vision and urban design. Diverse forms of data collected from sensors at areas of high activity in the urban environment, such as street intersections, are thus a valuable resource for researchers interpreting the dynamics between vehicles, pedestrians, and the built environment. We present a high-resolution audio, video, and LiDAR dataset of three urban intersections in Brooklyn, New York, totaling approximately 8 unique hours. The data is collected with custom Reconfigurable Environmental Intelligence Platform (REIP) sensors that are designed with the ability to accurately synchronize multiple video and audio inputs.
Access the data files
Due to the size (~550 GB) and complexity of the data, you must access it via Globus: https://app.globus.org/file-manager?origin_id=c43d41ac-d286-4ac4-9318-3d65f3d9b855&origin_path=%2Fq1byv-qc065-streetaware%2F. The README file explains the contents further.
DOI: 10.34683/sr199
title: StoneRounds Case: SR199
title: Type 1 Usher Syndrome

description: StoneRounds Case SR199 was diagnosed with Type 1 Usher Syndrome likely caused by mutations in the gene: CDH23.
DOI: 10.6073/pasta/73a87ca16ca95c833cc5976a031c20fa
title: Short- And Long-Term Micro & Nano Particles Exposure to Estuarine Model Species at Variable Salinities

description: Micro (&lt; 5mm) & Nano (1-1000 nm) plastic (MNP) particles are ubiquitous in the environment and have been shown to have a variety of effects on aquatic organisms. The effects of MNP exposure can vary depending on the type of MNP, the concentration of MNP, the duration of exposure, and the salinity of the water. This study used 5 plastic types including polyester (PE), polypropylene (PP), polylactic acid (PLA), polyethylene terephthalate (PETE) and tire particles (TP) in two forms, solid plastic particles and microfibers. To assess potential impacts on exposed organisms, early life stages of the estuarine indicator species Inland Silverside (Menidia beryllina) and mysid shrimp (Americamysis bahia) were exposed to three concentrations at micro- and nano-size fractions, and separately to leachate, across a 5-25 PSU salinity gradient. This exposure study was performed in longer term (21 days for Inland Silverside and 28 days for mysid shrimp) and shorter term (4 days for Inland Silverside and 7 days for mysid shrimp). Following MNP exposures of 7d (A. bahia) and 96 h (M. beryllina), behavioral assays were performed post-exposure from each treatment using a Danio Vision Observation Chamber (Noldus, Wageningen, the Netherlands) for the dark: light cycle as described previously (Siddiqui et al., 2022; Siddiqui et al., 2023; Mundy et al., 2021; Segarra et al., 2021). These behavior studies provide important information for risk assessments and policy making that can establish knowledge for MNPs risk.
DOI: 10.25345/c5br8ms1g
title: MassIVE MSV000092183 - DDA and PRM Raw Data for Nanobodies
title: Journal Article: Structure-based design of nanobodies that inhibit seeding of Alzheimer's patient-extracted tau fibrils
DOI: 10.25345/c5707wz6j
title: MassIVE MSV000092184 - DDA and PRM Data for IR5 WIW and WIW Nanobodies
title: Journal Article: Structure-based design of nanobodies that inhibit seeding of Alzheimer's patient-extracted tau fibrils
DOI: 10.5281/zenodo.7637672
title: Data - A Functionalized Monte Carlo 3D Radiative Transfer Model: Radiative Effects of Clouds over Reflecting Surfaces

description: Data and scripts associated with the article "A Functionalized Monte Carlo 3D Radiative Transfer Model: Radiative Effects of Clouds over Reflecting Surfaces"
DOI: 10.5281/zenodo.7637671
title: Data - A Functionalized Monte Carlo 3D Radiative Transfer Model: Radiative Effects of Clouds over Reflecting Surfaces

description: Data and scripts associated with the article "A Functionalized Monte Carlo 3D Radiative Transfer Model: Radiative Effects of Clouds over Reflecting Surfaces"
DOI: 10.6084/m9.figshare.23528316
title: Mizar Mathematical Library Knowledge Graph (MMLKG)

description: Mizar Mathematical Library Knowledge Graph (MMLKG) dataset with supplementary files <br> MMLKG is a thesaurus for describing a comprehensive repository of mathematical papers written in the Mizar language and computer-verified by the Mizar proof-checker (Mizar Mathematical Library). <br> Read more about the MMLKG project at the MMLKG website. <br> <strong>Files:</strong> README.md LICENSE.txt: A license for all files stats.json: A JSON file with metadata and stats for mmlkg.graphml mmlkg.graphml: The main file - Mizar Mathematical Library Knowledge Graph GraphML for load to different graph databases, e.g. Neo4j ./csvs/*: CSV files with relationships for the graph ./metadata/metadata.xml: An XML file for graph metadata ./metadata/metadata.xsd: A main schema for metadata.xml ./metadata/dc.xsd: Dublin Core schema for metadata.xml ./rdf/rdf_data.nt: An N-Triples file for external RDF resources <br> The ./rdf/rdf_data.nt file was prepared by Dominik Tomaszuk (@domel) and is available under the CC-BY 4.0 License. The base for the query was developed using Wikidata, which is available under the Creative Commons CC0 License. While it also includes references to DBpedia and YAGO (whose data are on Creative Commons Attribution-ShareAlike 3.0 License), Dominik Tomaszuk only retrieved non-data links from these sources. The structure of this file is entirely different than the above datasets.
DOI: 10.6084/m9.figshare.23530641
title: NFT_prespilz

description: Processed post SICILIAN data, including all true junctions used for the SpliZ pipeline.
DOI: 10.6084/m9.figshare.23522391
title: NGE_prespliz

description: Processed post SICILIAN data, including all true junctions used for the SpliZ pipeline.
DOI: 10.6084/m9.figshare.23530641.v1
title: NFT_prespilz

description: Processed post SICILIAN data, including all true junctions used for the SpliZ pipeline.
DOI: 10.6084/m9.figshare.23522391.v1
title: NGE_prespliz

description: Processed post SICILIAN data, including all true junctions used for the SpliZ pipeline.
DOI: 10.25505/fiz.icsd.cc2g6ht0
title: CSD 2270372: Experimental Crystal Structure Determination

description: Related Article: P. Tinnemans|2023|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7802678
title: Supplementary Datasets and Movies for the Paper "Major California faults are smooth across multiple scales at seismogenic depth"

description: Supplementary Datasets and Movies for the Paper<br> <strong>M</strong><strong>ajor California faults </strong><strong>are</strong><strong> smooth </strong><strong>across</strong><strong> multiple scales </strong><strong>at </strong><strong>seismogenic </strong><strong>depth</strong><br> by Anthony Lomax and Pierre Henry DOI: https://doi.org/10.26443/seismica.v2i1.324 Movies S1-2 Seismicity along the central San Andreas fault zone around Parkfield as Figure 1 in the main text. Shows rotating, lateral view around ~S40°E for (Movie S1) NCSS-DD and (Movie S2) NLL-SSST-coherence. See Figure 1 caption in the main text for key to figure elements. Movie S3-7 Animated, rotating later views of NLL-SSST-coherence relocations of seismicity other than Parkfield presented in the main paper and this supplement.<br> Movie_S1_Parkfield_2022_sect_DD_movie_20230401.mp4 Movie_S2_Parkfield_2022_sect_NLL-SSST-coherence_movie_20230401.mp4 Movie_S3_S_Calaveras_2022_NLL-SSST-coherence_movie_20230401.mp4 – Southern Calaveras Fault Zone<br> Movie_S4_Mendocino_2021_NLL-SSST-coherence_movie_20230401.mp4 – Cape Mendocino<br> Movie_S5_MountLewis_1986_NLL-SSST-coherence_movie_20230401.mp4 – Mount Lewis<br> Movie_S6_SW_SanFrancisco_NLL-SSST-coherence_movie_20230401.mp4 - Southwest of San Francisco<br> Movie_S7_Calipatria_2021_NLL-SSST-coherence_movie_20230401.mp4 - Calipatria sequence Datasets S1-5 CSV format catalogs of NLL-SSST-coherence relocation results presented in the main text.<br> CSV fields correspond to data in the NLLoc Hypocenter-Phase file ds01_Parkfield_2004_NLL_SSST_coherence.csv - Parkfield ds02_S_Calaveras_2022_NLL_SSST_coherence.csv – Southern Calaveras Fault Zone ds03_Mendocino_2021_NLL_SSST_coherence,csv – Cape Mendocino ds04_MountLewis_1986_NLL_SSST_coherence.csv – Mount Lewis ds05_SW_SanFrancisco_2021_NLL_SSST_coherence.csv - Southwest of San Francisco ds06_Calipatria_2021_NLL_SSST_coherence.csv - Calipatria sequence File S1 (project_run_scripts.zip) Archive of run scripts and related set-up, configuration and other meta-data files for locations cases presented in this paper.
DOI: 10.5281/zenodo.7802679
title: Supplementary Datasets and Movies for the Paper "Major California faults are smooth across multiple scales at seismogenic depth"

description: Supplementary Datasets and Movies for the Paper<br> <strong>M</strong><strong>ajor California faults </strong><strong>are</strong><strong> smooth </strong><strong>across</strong><strong> multiple scales </strong><strong>at </strong><strong>seismogenic </strong><strong>depth</strong><br> by Anthony Lomax and Pierre Henry DOI: https://doi.org/10.26443/seismica.v2i1.324 Movies S1-2 Seismicity along the central San Andreas fault zone around Parkfield as Figure 1 in the main text. Shows rotating, lateral view around ~S40°E for (Movie S1) NCSS-DD and (Movie S2) NLL-SSST-coherence. See Figure 1 caption in the main text for key to figure elements. Movie S3-7 Animated, rotating later views of NLL-SSST-coherence relocations of seismicity other than Parkfield presented in the main paper and this supplement.<br> Movie_S1_Parkfield_2022_sect_DD_movie_20230401.mp4 Movie_S2_Parkfield_2022_sect_NLL-SSST-coherence_movie_20230401.mp4 Movie_S3_S_Calaveras_2022_NLL-SSST-coherence_movie_20230401.mp4 – Southern Calaveras Fault Zone<br> Movie_S4_Mendocino_2021_NLL-SSST-coherence_movie_20230401.mp4 – Cape Mendocino<br> Movie_S5_MountLewis_1986_NLL-SSST-coherence_movie_20230401.mp4 – Mount Lewis<br> Movie_S6_SW_SanFrancisco_NLL-SSST-coherence_movie_20230401.mp4 - Southwest of San Francisco<br> Movie_S7_Calipatria_2021_NLL-SSST-coherence_movie_20230401.mp4 - Calipatria sequence Datasets S1-5 CSV format catalogs of NLL-SSST-coherence relocation results presented in the main text.<br> CSV fields correspond to data in the NLLoc Hypocenter-Phase file ds01_Parkfield_2004_NLL_SSST_coherence.csv - Parkfield ds02_S_Calaveras_2022_NLL_SSST_coherence.csv – Southern Calaveras Fault Zone ds03_Mendocino_2021_NLL_SSST_coherence,csv – Cape Mendocino ds04_MountLewis_1986_NLL_SSST_coherence.csv – Mount Lewis ds05_SW_SanFrancisco_2021_NLL_SSST_coherence.csv - Southwest of San Francisco ds06_Calipatria_2021_NLL_SSST_coherence.csv - Calipatria sequence File S1 (project_run_scripts.zip) Archive of run scripts and related set-up, configuration and other meta-data files for locations cases presented in this paper.
DOI: 10.5281/zenodo.8046197
title: Data from: Geographical variation of Artemisia leaf morphology along a large environmental gradient in China

description: We collected 60 species of <em>Artemisia</em> from 81 sampling sites in 15 provinces in China from the end of July to August 2018. At each site, we recorded latitude and longitude. Then we identified all<em> Artemisia</em> species and randomly sampled 4 plants for each species. A total of 1,041 plants were sampled. In the laboratory, 10 leaves in the middle of each plant were selected and detached. Because light might have effect on leaf morphology, we only used sun exposed leaves. The leaves were soaked in distilled water for 24 h to fully restore their shapes. After blotted-dried, leaves were place as petiole to the left and tip to the right, and an Epson V370 (Seiko Epson Corp., Nagano, Japan) was used to scan the leaves at a resolution of 600 DPI. We set 40 landmarks along the blade edge on each leaf. The first point was set at the petiole and the 21st point at the tip, and these two points were defined as landmarks. The remaining points were evenly distributed at the blade edge and defined as semilandmarks. Landmarks were saved in tps format using Geomorph package.
DOI: 10.5281/zenodo.8046196
title: Data from: Geographical variation of Artemisia leaf morphology along a large environmental gradient in China

description: We collected 60 species of <em>Artemisia</em> from 81 sampling sites in 15 provinces in China from the end of July to August 2018. At each site, we recorded latitude and longitude. Then we identified all<em> Artemisia</em> species and randomly sampled 4 plants for each species. A total of 1,041 plants were sampled. In the laboratory, 10 leaves in the middle of each plant were selected and detached. Because light might have effect on leaf morphology, we only used sun exposed leaves. The leaves were soaked in distilled water for 24 h to fully restore their shapes. After blotted-dried, leaves were place as petiole to the left and tip to the right, and an Epson V370 (Seiko Epson Corp., Nagano, Japan) was used to scan the leaves at a resolution of 600 DPI. We set 40 landmarks along the blade edge on each leaf. The first point was set at the petiole and the 21st point at the tip, and these two points were defined as landmarks. The remaining points were evenly distributed at the blade edge and defined as semilandmarks. Landmarks were saved in tps format using Geomorph package.
DOI: 10.6084/m9.figshare.23530653
title: KBC_laser_data

description: Characteristics of ZnO/KBC bionanocomposite foams and the results about random lasers of ZnO/KBC bionanocomposite foams.
DOI: 10.5281/zenodo.14988549
title: Digital Comic Books in Nigeria: Comic Republic

description: Comic Republic is a digital publisher and creative hub of Nigerian comic books. This data set inlcudes data on the creative teams behind all comics published by the company up to March 2024. Genres assigned by Comic Republic itself are also included.