cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2067114.v2
title: SI.xlsx

description: All relevant data.
DOI: 10.6084/m9.figshare.2067387.v12
title: „Glycosidic exclusion“ not protecting the „Oh“ or Bombay Type

description: <b>“Glycosidic exclusion” not protecting the “Oh” or <i>Bombay type.</i></b> The classical <i>Bombay type</i> is characterized by the lack of expression of any ABO(H) epitope and instead shows the development of high isoagglutinin levels, additionally exerting strong binding of complement to anti-H agglutinin. The red cell surface presents with the naked structure Gal-β1-R, which has not been completed for the H-receptor (Fuc-α1-2-Gal-β1-R), thereby representing the structural fundament for ABOH epitopes. In its native form, the <i>Bombay</i> type occurs in individuals with the extremely rare genotype (h/h;se/se). This molecular biological phenomenon is explained by point mutations at the H- and Se genes on chromosome 19 such that the fucosyltransferases FUT1 and FUT2 are not encoded. FUT1 and FUT2 are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, and fucosyl residues provide the functional-structural basis of the formation of any ABOH phenotype on the cell surface or in secretions and plasma proteins. Moreover, through developmental varying of the positions of the fucosyl residues between the cell surfaces and the heavy chains of immunoglobulins, they appear to augment or reduce antibody-mediated cellular cytotoxicity. This involves the regulation of growth processes and control over physiological autoreactivity in embryonic stem cell to germ cell transformation, where the predominantly <i>O</i>-glycosylations become in <i>Bombay type</i> individuals consequently exposed to metabolic competition with multiple glycosidic sites of extremely glycan-depleted, somatically <i>n o n- c o m p l e t e d</i> immunoglobulins. Arend, Peter: ABO phenotype and innate isoagglutinin specificities as they arise from “glycosidic exclusion” and relate to human reproduction. A hypothesis* https://dx.doi.org/10.6084/m9.figshare.1368271 Arend, Peter: Human fertility and ABO(H) histo (blood) group completenes as they relate to somatic fucosylations, https://dx.doi.org/10.6084/m9.figshare.2007132 Abbreviations: ESC = embryonic stem cells; GC = germ cells
DOI: 10.6084/m9.figshare.2067087.v1
title: lPD-images

description: data from "Altered activation in cerebellum contralateral to unilateral thalamotomy may mediate tremor suppression in Parkinson’s disease: A short-term regional homogeneity fMRI study".files with name "smReHo_nXX.nii" and "smReHo_NCXX.nii" are referred to healthy subjects;files with name "smReHo_subXXa.nii" are referred to TD PD in the pre-surgical condition;files with name "smReHo_subXXb.nii" are referred to TD PD in the post-surgical condition;<br><br>
DOI: 10.6084/m9.figshare.2067072
title: Coral Trait Database 1.1.0

description: Second release of the Coral Trait Database public data and resource list.
DOI: 10.6084/m9.figshare.2067075
title: PC aligned landmark data, groups designated, centroid included, landmarks with error dropped.txt

description: Tallman M (2016) Shape Ontogeny of the Distal Femur in the Hominidae with Implications for the Evolution of Bipedality. PLoS ONE11(2): e0148371. https://doi.org/10.1371/journal.pone.0148371
DOI: 10.6084/m9.figshare.2067075.v1
title: PC aligned landmark data, groups designated, centroid included, landmarks with error dropped.txt

description: Tallman M (2016) Shape Ontogeny of the Distal Femur in the Hominidae with Implications for the Evolution of Bipedality. PLoS ONE11(2): e0148371. https://doi.org/10.1371/journal.pone.0148371
DOI: 10.6084/m9.figshare.2067057
title: Files for Delmont et al. (2016)

description: Files referenced from the paper by Delmont et al. (2016) titled "<i>Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies</i>".<br>See http://merenlab.org/data/2016_Delmont_et_al_Tardigrade/ for details.
DOI: 10.6084/m9.figshare.2067051
title: UCMZ_Struthio_adult_tarsometatarsus-DICOM_CT

description: DICOM CT files of adult <i>Struthio camels</i> tarsometatarsus.
DOI: 10.6084/m9.figshare.2067051.v1
title: UCMZ_Struthio_adult_tarsometatarsus-DICOM_CT

description: DICOM CT files of adult <i>Struthio camels</i> tarsometatarsus.
DOI: 10.6084/m9.figshare.2067057.v1
title: Files for Delmont et al. (2016)

description: Files referenced from the paper by Delmont et al. (2016) titled "<i>Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies</i>".<br>See http://merenlab.org/data/2016_Delmont_et_al_Tardigrade/ for details.
DOI: 10.6084/m9.figshare.2067018
title: Dual energy spectral CT imaging for colorectal cancer grading.xlsx

description: <b>Data for Dual energy spectral CT imaging for colorectal cancer grading: a preliminary study</b> <b> </b>
DOI: 10.6084/m9.figshare.2067000
title: Dostępność komunikacyjna polskich miast-gospodarzy turnieju Euro 2012

description: utorzy artykułu mają na celu udowodnienie tezy, iż środki transportu świadczące o dostępności komunikacyjnej polskich miast organizatorów turnieju UEFA EURO 2012 wykazują charakter komplementarny i tylko jako takie są w stanie sprostać postulatom przewozowym stawianym przez wzmożony ruch turystyczny. Od dawna wiadomo, iż sprawna realizacja postulatów przewozowych przyczynia się do zwiększonego ruchu turystycznego oraz jest podstawą do budowania marki turystycznej danego regionu. Przywilej organizacji turnieju piłkarskiego o światowym znaczeniu oprócz wielu korzyści niesie ze sobą jeszcze większą odpowiedzialność władz danego państwa. Autorzy postarają się w poniższym artykule przedstawić osiągnięcia z okresu pięciu lat bezpośrednio przed rozgrywkami, które wpłynęły bezpośrednio na zwiększenie dostępności komunikacyjnej czterech miast-gospodarzy.
DOI: 10.6084/m9.figshare.2067027.v3
title: Pangenetic Evolution of Systems - a new Darwinian synthesis

description: The first article of a series describing a new evolutionary theory. The theory has two aspects, firstly that mechanisms of somatic feedback into the developing germline influence the mutational process - the inheritance of acquired evolvability of traits, and secondly, that the repetitive genomic landscape is both sculpted by, and forms the fabric of, a modular evolutionary process that allows individual subnetworks, or traits, to evolve independently of one another even when the components of these subnetworks are located far from each other in the genome. Together they provide a new view of evolution. This article introduces the theory. Further articles will go into more detail about aspects of the theory and provide evidence for it. <br><br>
DOI: 10.6084/m9.figshare.2067027.v4
title: Pangenetic Evolution of Systems - a new Darwinian synthesis

description: The first article of a series describing a new evolutionary theory. The theory has two aspects, firstly that mechanisms of somatic feedback into the developing germline influence the mutational process - the inheritance of acquired evolvability of traits, and secondly, that the repetitive genomic landscape is both sculpted by, and forms the fabric of, a modular evolutionary process that allows individual subnetworks, or traits, to evolve independently of one another even when the components of these subnetworks are located far from each other in the genome. Together they provide a new view of evolution. This article introduces the theory. Further articles will go into more detail about aspects of the theory and provide evidence for it. <br><br>
DOI: 10.6084/m9.figshare.2066925
title: Identifying and removing contamination in eukaryotic genome assemblies using advanced processing and visualization capabilities

description: To be done soon
DOI: 10.6084/m9.figshare.2066922
title: It’s Not TV, It’s New Media! How has the global television industry evolved and adapted after the emergence of new media technologies to the market?

description: My unpublished Masters degree dissertation researches the hypothesis that the television industry must evolve and adapt to the technological and cultural changes it faces. Online broadcasting and video on demand have proven to be great competition to the medium which may face an uncertain future.
DOI: 10.6084/m9.figshare.2066925.v2
title: Identifying and removing contamination in eukaryotic genome assemblies using advanced processing and visualization capabilities

description: To be done soon
DOI: 10.6084/m9.figshare.2066925.v1
title: Bacterial contaminants from a tardigrade genomic assembly

description: High-throughput sequencing provides a fast and cost effective mean to recover genomes of organisms from all domains of life. However, adequate curation of the assembly results requires advanced bioinformatics approaches. In a recent study, Boothby et al. (doi: 10.1073/pnas.1510461112) reported the first draft genome for a tardigrade, <i>Hypsibius dujardini</i>, and detected a remarkable amount of genes with bacterial origin. Authors suggested that horizontal gene transfers (HGTs) could explain the unique ability of this microscopic animal to withstand extreme ranges of temperature, pressure, and radiation. However, a subsequent analysis by Koutsovoulos et al. (doi: 10.1101/033464) revealed extensive bacterial contamination in Boothby et al’s results, and reported a curated, yet much smaller genome for <i>H. dujardini</i>. Here, we re-analyzed the sequencing data generated by both groups using approaches routinely employed by microbial ecologists. We provide a holistic view of the draft tardigrade genome by displaying DNA and RNA data originating from 12 sequencing libraries, along with additional metadata, in one display. We identified and removed multiple near-complete bacterial genomes, and report a curated draft genome of 182 Mbp supported by RNA-Seq data. This genome contains only 3.9% of genes Boothby et al. identified to support the extended HGT hypothesis, yet is 34.8% longer than the curated genome reported by Koutsovoulos et al. Our results indicate that long read libraries introduced most contaminants, the type of bacterial contaminants varied between library preparations, and between sequencing efforts. Visualization and curation of eukaryotic genome assemblies can benefit from tools that are designed to address far more complex needs of today’s microbiologists who are constantly challenged by the environmental sequencing data. While the advent of high-throughput sequencing blurs the boundaries between different ends of life sciences, increased communication is essential to identify and disseminate best practices across disciplines.
DOI: 10.6084/m9.figshare.2066907
title: Conference Datasets

description: Each file contains information about scientists conference attendance for particular conference series. Data are fully anonymized.
DOI: 10.6084/m9.figshare.2066913
title: S2 Data. Fluorescence data of mucosa.csv

description: Fluorescence data of mucosa
DOI: 10.6084/m9.figshare.2067027.v6
title: Pangenetic Evolution of Systems - a new Darwinian synthesis

description: The first article of a series describing a new evolutionary theory. The theory has two aspects, firstly that mechanisms of somatic feedback into the developing germline influence the mutational process - the inheritance of acquired evolvability of traits, and secondly, that the repetitive genomic landscape is sculpted by, and forms the fabric of, a modular evolutionary process that allows individual subnetworks, or traits, to evolve independently of one another even when the components of these subnetworks are located far from each other in the genome. Together they provide a new view of evolution. This article introduces the theory. Further articles will go into more detail about aspects of the theory and provide evidence for it. <br><br>
DOI: 10.6084/m9.figshare.2066904
title: Meetup Datasets

description: Each file contains information about participation patterns of Meetup users in group events for particular Meetup group. Data are fully anonymized.
DOI: 10.6084/m9.figshare.2066913.v1
title: S2 Data. Fluorescence data of mucosa.csv

description: Fluorescence data of mucosa
DOI: 10.6084/m9.figshare.2066907.v1
title: Conference Datasets

description: Each file contains information about scientists conference attendance for particular conference series. Data are fully anonymized.
DOI: 10.6084/m9.figshare.2066859
title: Molecular interactions and solubilization of structurally related <i>meso</i>-porphyrin photosensitizers by amphiphilic block copolymers (Pluronics)

description: The influence of four Pluronics block copolymers (i.e. F68, P123, F127, and L44) on the aggregation and solubilization of five structurally related <i>meso</i>-tetraphenyl porphyrin photosensitizers (PS) as model compounds for use in Photodynamic Therapy of cancer (PDT) was evaluated. Interactions between the PSs and Pluronics were studied at micromolar concentration by means of UV-Vis absorption spectrometry and by kinematic viscosity (υ) and osmolarity measurements at millimolar concentrations. Pluronic micelles were characterized by size and zeta potential (ζ) measurements. The morphology of selected PS-Pluronic assemblies was studied by atomic force microscopy (AFM). While hydrophobic 5,10,15,20-Tetrakis(4-hydroxyphenyl) porphine (THPP) seemed to be solubilized in the Pluronic micellar cores, amphiphilic di(monoethanolammonium) <i>meso</i>-tetraphenyl porphine disulphonate (TPPS2a) was likely bound to the micellar palisade layer. Hydrophilic PSs like 5,10,15,20-Tetrakis (4-trimethylaniliniumphenyl) porphine (TAPP) seemed to form complexes with Pluronic unimers and to be distributed among the micellar coronas. TPPS2a aggregated into a network which could be broken at Pluronic concentration ≫ cmc, but would reconstitute in the presence of tonicity adjusting agents, e.g<i>.</i> sodium chloride (NaCl) or glucose.
DOI: 10.6084/m9.figshare.2066859.v1
title: Molecular interactions and solubilization of structurally related <i>meso</i>-porphyrin photosensitizers by amphiphilic block copolymers (Pluronics)

description: The influence of four Pluronics block copolymers (i.e. F68, P123, F127, and L44) on the aggregation and solubilization of five structurally related <i>meso</i>-tetraphenyl porphyrin photosensitizers (PS) as model compounds for use in Photodynamic Therapy of cancer (PDT) was evaluated. Interactions between the PSs and Pluronics were studied at micromolar concentration by means of UV-Vis absorption spectrometry and by kinematic viscosity (υ) and osmolarity measurements at millimolar concentrations. Pluronic micelles were characterized by size and zeta potential (ζ) measurements. The morphology of selected PS-Pluronic assemblies was studied by atomic force microscopy (AFM). While hydrophobic 5,10,15,20-Tetrakis(4-hydroxyphenyl) porphine (THPP) seemed to be solubilized in the Pluronic micellar cores, amphiphilic di(monoethanolammonium) <i>meso</i>-tetraphenyl porphine disulphonate (TPPS2a) was likely bound to the micellar palisade layer. Hydrophilic PSs like 5,10,15,20-Tetrakis (4-trimethylaniliniumphenyl) porphine (TAPP) seemed to form complexes with Pluronic unimers and to be distributed among the micellar coronas. TPPS2a aggregated into a network which could be broken at Pluronic concentration ≫ cmc, but would reconstitute in the presence of tonicity adjusting agents, e.g<i>.</i> sodium chloride (NaCl) or glucose.
DOI: 10.6084/m9.figshare.2066793
title: Bibliography used for literature review on learning dashboard studies

description: Bibliography used for literature review on learning dashboard studies
DOI: 10.6084/m9.figshare.2066799
title: Processed Google Books Ngram Viewer data

description: Association matrices extracted from google n-gram data for the 5018 words in the Free Association Norms dataset.<br>
DOI: 10.6084/m9.figshare.2066799.v1
title: Processed Google Books Ngram Viewer data

description: Association matrices extracted from google n-gram data for the 5018 words in the Free Association Norms dataset.<br>
DOI: 10.6084/m9.figshare.2066793.v2
title: Bibliography used for literature review on learning dashboard studies

description: Bibliography used for literature review on learning dashboard studies
DOI: 10.6084/m9.figshare.2066793.v1
title: Bibliography used for literature review on learning dashboard

description: Bibliography used for literature review on learning dashboards
DOI: 10.6084/m9.figshare.2066763
title: A DEM of the 2010 surface topography of Storglaciären, Sweden

description: During the summer of 2010 the surface elevation of Storglaciären in northern Sweden was measured using high-precision GNSS and reflectorless Total Station surveys. The DEM created from these data contain less noise than those created from orthophotographic methods over snow covered glaciers and is therefore smoother, with fewer erroneous features in the data. The principal, though not sole, intended use for the DEM is in the calculation of surface mass balance, which has influenced decisions on what constitutes a functional part of a glacier, leading to the exclusion of features such as snow aprons and perennial ice above the bergschrund. Other peripheral features have changed since the previous, aerial survey from 1999 leading to a reduction in size of approximately 0.17 km<sup>2</sup>.
DOI: 10.6084/m9.figshare.2066763.v1
title: A DEM of the 2010 surface topography of Storglaciären, Sweden

description: During the summer of 2010 the surface elevation of Storglaciären in northern Sweden was measured using high-precision GNSS and reflectorless Total Station surveys. The DEM created from these data contain less noise than those created from orthophotographic methods over snow covered glaciers and is therefore smoother, with fewer erroneous features in the data. The principal, though not sole, intended use for the DEM is in the calculation of surface mass balance, which has influenced decisions on what constitutes a functional part of a glacier, leading to the exclusion of features such as snow aprons and perennial ice above the bergschrund. Other peripheral features have changed since the previous, aerial survey from 1999 leading to a reduction in size of approximately 0.17 km<sup>2</sup>.
DOI: 10.6084/m9.figshare.2066742
title: Unified Cropland Layer

description: In order to produce the best global cropland map, the fittest existing cropland map at country level was identified by means of a multi-criteria analysis. Four criteria were selected to evaluate the fitness of a cropland map: the adequacy of the legend, the spatial resolution, the timeliness and the confidence level. Those fittest maps were resampled at 250 meters in a reference grid with an average resampling method and then joined spatially in order to form the Unified Cropland Layer. The current version is for the year 2014.
DOI: 10.6084/m9.figshare.2066739
title: Hospital admissions, transfers and costs of Guillain-Barré syndrome

description: <b>Hospital admissions, transfers and costs of Guillain-Barré syndrome, accepted in PLOS ONE.</b><b>PIV study data.</b>
DOI: 10.6084/m9.figshare.2066724
title: Cardiovascular toxicity with levetiracetam overdose

description: <b>Objective</b>: To describe the cardiovascular toxicity and pharmacokinetics of levetiracetam in overdose. <b>Case Report</b>: A 43-year-old female presented 8 h post ingestion of 60–80 g of levetiracetam with mild central nervous system depression, bradycardia, hypotension and oliguria. Her cardiovascular toxicity transiently responded to atropine and intravenous fluids. A bedside echocardiogram demonstrated normal left and right ventricular contractility. Despite her cardiovascular toxicity and oliguria, she had normal serial venous lactates and renal function; and made a complete recovery over 48 h. Her levetiracetam concentration was 463 mcg/ml 8 h post ingestion (therapeutic range 10–40 mcg/ml) and her concentration–time data best fitted a one-compartment model with first-order input and an elimination half-life of 10.4 h. <b>Discussion</b>: Levetiracetam in large ingestions appears to cause bradycardia and hypotension that is potentially responsive to atropine and intravenous fluids. Based on a normal echocardiogram, the mechanism for this effect may be levetiracetam acting at muscarinic receptors at high concentration. The pharmacokinetics of levetiracetam in overdose appeared to be similar to therapeutic levetiracetam dosing.
DOI: 10.6084/m9.figshare.2066739.v1
title: Hospital admissions, transfers and costs of Guillain-Barré syndrome

description: <b>Hospital admissions, transfers and costs of Guillain-Barré syndrome, accepted in PLOS ONE.</b><b>PIV study data.</b>
DOI: 10.6084/m9.figshare.2066718
title: SNM - Example of Matlab code and data

description: Compacted file containing Matlab scripts and some data for Statokinesigram Normalization Method application.<br>
DOI: 10.6084/m9.figshare.2066724.v1
title: Cardiovascular toxicity with levetiracetam overdose

description: <b>Objective</b>: To describe the cardiovascular toxicity and pharmacokinetics of levetiracetam in overdose. <b>Case Report</b>: A 43-year-old female presented 8 h post ingestion of 60–80 g of levetiracetam with mild central nervous system depression, bradycardia, hypotension and oliguria. Her cardiovascular toxicity transiently responded to atropine and intravenous fluids. A bedside echocardiogram demonstrated normal left and right ventricular contractility. Despite her cardiovascular toxicity and oliguria, she had normal serial venous lactates and renal function; and made a complete recovery over 48 h. Her levetiracetam concentration was 463 mcg/ml 8 h post ingestion (therapeutic range 10–40 mcg/ml) and her concentration–time data best fitted a one-compartment model with first-order input and an elimination half-life of 10.4 h. <b>Discussion</b>: Levetiracetam in large ingestions appears to cause bradycardia and hypotension that is potentially responsive to atropine and intravenous fluids. Based on a normal echocardiogram, the mechanism for this effect may be levetiracetam acting at muscarinic receptors at high concentration. The pharmacokinetics of levetiracetam in overdose appeared to be similar to therapeutic levetiracetam dosing.
DOI: 10.6084/m9.figshare.2066730
title: Systematic review of educational interventions to improve glaucoma medication adherence: an update in 2015

description: Purpose: To evaluate the current state of the research on educational interventions whose aim is to improve glaucoma medication adherence. Methods: A systematic review of Pubmed, Embase and CINAHL was conducted to identify research studies evaluating educational interventions to improve glaucoma medication adherence. Studies were included if the intervention was described, the outcomes assessed glaucoma medication adherence and the focus of the research was on adults with glaucoma. The search was conducted on June 2, 2015. Results: Seventeen studies were identified that met the inclusion criteria. These included nine randomized controlled trials and eight observational studies. Eight of the studies demonstrated an impact on glaucoma medication adherence, though their outcome measures were too heterogeneous to estimate a pooled effect size. Conclusion: The interventions that successfully improved glaucoma medication adherence used an adequate dose of face-to-face counseling to overcome barriers to health behavior change alongside education about glaucoma.
DOI: 10.6084/m9.figshare.2066742.v1
title: ucl_2014_v2-0.tif

description: In order to produce the best global cropland map, the fittest existing cropland map at country level was identified by means of a multi-criteria analysis. Four criteria were selected to evaluate the fitness of a cropland map: the adequacy of the legend, the spatial resolution, the timeliness and the confidence level. Those fittest maps were resampled at 250 meters in a reference grid with an average resampling method and then joined spatially in order to form the Unified Cropland Layer.