cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3733138_d7
title: Additional file 2: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: Plant genes differentially expressed after infection with Cp20.1, Î cptf1, Î cpcdc42, mock. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3733138_d9.v1
title: Additional file 4: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: Overview of GO terms â  biological processâ   for in planta expressed Cp20.1 genes (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3733159_d2
title: Additional file 2: Table S1. of Neurogenetic analysis of childhood disintegrative disorder

description: CDD families for genetic analysis. Table S2. Rare non-synonymous and synonymous variants from WES unique to probands or unaffected sibling controls. Table S3. Rates of variants from WES in CDD probands and unaffected sibling controls. Table S4. Genes represented once in the core probe set (Kang et al. 2011) and used for expression analysis. Table S5. Median expression values (Log2-transformed signal intensity) for CDD candidate genes by time period and brain region. Table S6. Difference in median expression values (Log2-transformed signal intensity) between non-neocortical and neocortical regions for gene sets by time period. Table S7. Pearson correlation coefficients for all pairwise combinations of CDD candidate genes. Table S8. Clinical characteristics of subjects studied by neuroimaging. Table S9. Features of CDD, LFASD, HFASD, and TD cohorts for neuroimaging analysis. Table S10. List of brain regions where TD:discovery exhibits significant faces &gt; houses activation. Table S11. Mean % signal change (faces &gt; houses) for each cohort in Fig. 4b. Table S12. Mean % signal change (faces &gt; houses) for each cohort in Figure S2. Table S13. List of brain regions where CDD exhibits significant faces &gt; houses activation. Table S14. Mean % signal change (faces &gt; houses) for each cohort in Fig. 5b. Table S15. Clinical characteristics of subjects studied by eye tracking. Table S16. Features of CDD, LFASD, HFASD, and TD cohorts in eye-tracking analysis. Table S17. Whole-exome sequencing quality metrics. Table S18. Features of SSC probands with and without regression by IQ and autism severity. (XLSX 364 kb)
DOI: 10.6084/m9.figshare.c.3733138_d8
title: Additional file 3: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: GO term distribution of in planta expressed Cp20.1 genes (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3733138_d9
title: Additional file 4: of Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale

description: Overview of GO terms â  biological processâ   for in planta expressed Cp20.1 genes (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3733999_d2.v1
title: Additional file 2 of Detect tissue heterogeneity in gene expression data with BioQC

description: Supplementary Document 1. This document can also be assessed on the BioQC website under [27] respectively. (ZIP 98 kb)
DOI: 10.6084/m9.figshare.c.3733999_d2
title: Additional file 2 of Detect tissue heterogeneity in gene expression data with BioQC

description: Supplementary Document 1. This document can also be assessed on the BioQC website under [27] respectively. (ZIP 98 kb)
DOI: 10.15468/dl.yhap27
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaenopsis ocellata Poey, 1865",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 69 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038426-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3733999_d3.v1
title: Additional file 3 of Detect tissue heterogeneity in gene expression data with BioQC

description: Supplementary Document 2. This document can also be assessed on the BioQC website under [28] respectively. (ZIP 305 kb)
DOI: 10.6084/m9.figshare.c.3733999_d3
title: Additional file 3 of Detect tissue heterogeneity in gene expression data with BioQC

description: Supplementary Document 2. This document can also be assessed on the BioQC website under [28] respectively. (ZIP 305 kb)
DOI: 10.6084/m9.figshare.c.3734053_d1
title: MOESM1 of Genetic polymorphisms in Plasmodium falciparum chloroquine resistance genes, pfcrt and pfmdr1, in North Sulawesi, Indonesia

description: Additional file 1: Table S1. Table of the observed genotypes in this study.
DOI: 10.6084/m9.figshare.c.3734071_d1.v1
title: Additional file 1: of Patients who restart antiretroviral medication after interruption remain at high risk of unfavorable outcomes in Ethiopia

description: Excel file containing study dataset used for analysis. (XLS 3617Â kb)
DOI: 10.6084/m9.figshare.c.3734071_d1
title: Additional file 1: of Patients who restart antiretroviral medication after interruption remain at high risk of unfavorable outcomes in Ethiopia

description: Excel file containing study dataset used for analysis. (XLS 3617Â kb)
DOI: 10.6084/m9.figshare.c.3734122_d1.v1
title: Additional file 1: Table S1. of DNA methylation signatures for 2016 WHO classification subtypes of diffuse gliomas

description: Sample size and diffuse glioma subsets of various cohorts used in this study. Table S2. List of differentially methylated CpGs between LGG IDH mutant and WT used as PAM input in the training (TCGA) set. Table S3A. List of the 14 CpG methylation signatures for LGG IDH mutant versus IDH WT in the test set (TCGA) and validation set (GSE48462). Table S3B. List of the 14 CpG methylation signatures for oligodendroglioma (ODG) versus diffuse astrocytoma (DA) in the test set (TCGA) and validation set (GSE48462). Table S4. List of differentially methylated CpGs between oligodendroglioma and diffuse astrocytoma used as PAM input in the training (TCGA) set. Table S5. List of 259 differentially methylated CpG probes between GBM IDH mutant and WT used as PAM input in the training (TCGA) set. Table S6. Molecular analysis of discordant samples identified by CpG methylation signatures. Table S7A. Molecular status for IDH, TP53, ATRX, and 1p/19q in LGG samples from TCGA used in this study. Table S7B. Molecular status for IDH, TP53, ATRX, and 1p/19q in LGG samples from GSE58218 used in this study. Table S7C. Molecular status for IDH, TP53, ATRX, and 1p/19q in LGG samples from GSE48462 used in this study. Table S8. Patient IDs of the discordant samples derived from all datasets used in this study. Table S9A. Molecular status of IDH, TP53, ATRX, EGFR, and PTEN in GBM samples from TCGA dataset used in this study. Table S9B. Molecular status of IDH, TP53, ATRX, EGFR, and PTEN in GBM samples from GSE38278 dataset used in this study. (ZIP 1601Â kb)
DOI: 10.6084/m9.figshare.c.3734122_d1
title: Additional file 1: Table S1. of DNA methylation signatures for 2016 WHO classification subtypes of diffuse gliomas

description: Sample size and diffuse glioma subsets of various cohorts used in this study. Table S2. List of differentially methylated CpGs between LGG IDH mutant and WT used as PAM input in the training (TCGA) set. Table S3A. List of the 14 CpG methylation signatures for LGG IDH mutant versus IDH WT in the test set (TCGA) and validation set (GSE48462). Table S3B. List of the 14 CpG methylation signatures for oligodendroglioma (ODG) versus diffuse astrocytoma (DA) in the test set (TCGA) and validation set (GSE48462). Table S4. List of differentially methylated CpGs between oligodendroglioma and diffuse astrocytoma used as PAM input in the training (TCGA) set. Table S5. List of 259 differentially methylated CpG probes between GBM IDH mutant and WT used as PAM input in the training (TCGA) set. Table S6. Molecular analysis of discordant samples identified by CpG methylation signatures. Table S7A. Molecular status for IDH, TP53, ATRX, and 1p/19q in LGG samples from TCGA used in this study. Table S7B. Molecular status for IDH, TP53, ATRX, and 1p/19q in LGG samples from GSE58218 used in this study. Table S7C. Molecular status for IDH, TP53, ATRX, and 1p/19q in LGG samples from GSE48462 used in this study. Table S8. Patient IDs of the discordant samples derived from all datasets used in this study. Table S9A. Molecular status of IDH, TP53, ATRX, EGFR, and PTEN in GBM samples from TCGA dataset used in this study. Table S9B. Molecular status of IDH, TP53, ATRX, EGFR, and PTEN in GBM samples from GSE38278 dataset used in this study. (ZIP 1601Â kb)
DOI: 10.6084/m9.figshare.c.3734128_d1.v1
title: Additional file 1: Table S1. of The first isolation and molecular characterization of Toxoplasma gondii from horses in Serbia

description: Genotyping data of 63 Toxoplasma gondii strains with type III or type III-like genotypes collected in Europe, the Americas, Africa, Asia and Oceania. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3734107_d2.v1
title: Additional file 2: Figure S1A. of The germline variants in DNA repair genes in pediatric medulloblastoma: a challenge for current therapeutic strategies

description: Polish Pediatric Neurooncology Group (PPNG) treatment protocol for medulloblastoma patients (in children older than 3 years). Figure S1B. Polish Pediatric Neurooncology Group (PPNG) treatment protocol for medulloblastoma patients (in children younger than 3 years). (ZIP 575 kb)
DOI: 10.6084/m9.figshare.c.3734107_d2
title: Additional file 2: Figure S1A. of The germline variants in DNA repair genes in pediatric medulloblastoma: a challenge for current therapeutic strategies

description: Polish Pediatric Neurooncology Group (PPNG) treatment protocol for medulloblastoma patients (in children older than 3 years). Figure S1B. Polish Pediatric Neurooncology Group (PPNG) treatment protocol for medulloblastoma patients (in children younger than 3 years). (ZIP 575 kb)
DOI: 10.15468/dl.yf8tfh
title: Occurrence Download

description: A dataset containing 4546 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaetodipterus faber (Broussonet, 1782)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 4546 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038427-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3734137_d2.v1
title: Additional file 7: of Image analysis driven single-cell analytics for systems microbiology

description: Contains for each dataset the segmentation results of each method (.tif images) and corresponding parameterization files (.mat files). (ZIP 62299 kb)
DOI: 10.6084/m9.figshare.c.3734137_d2
title: Additional file 7: of Image analysis driven single-cell analytics for systems microbiology

description: Contains for each dataset the segmentation results of each method (.tif images) and corresponding parameterization files (.mat files). (ZIP 62299 kb)
DOI: 10.6084/m9.figshare.c.3734149_d1.v1
title: Additional file 1: of High pre-diagnosis attrition among patients with presumptive MDR-TB: an operational research from Bhopal district, India

description: Dataset; Description of file: This file contains all the variables of all the study particpiants that were collected during record review. (XLS 399Â kb)
DOI: 10.6084/m9.figshare.c.3734149_d1
title: Additional file 1: of High pre-diagnosis attrition among patients with presumptive MDR-TB: an operational research from Bhopal district, India

description: Dataset; Description of file: This file contains all the variables of all the study particpiants that were collected during record review. (XLS 399Â kb)
DOI: 10.6084/m9.figshare.c.3734137_d3.v1
title: Additional file 8: of Image analysis driven single-cell analytics for systems microbiology

description: SalPhase time-lapse movie ground truth table. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3734149_d2.v1
title: Additional file 2: of High pre-diagnosis attrition among patients with presumptive MDR-TB: an operational research from Bhopal district, India

description: Codebook/Data documentation sheet; Description of file: This file contains details of the fields including values (codes) and value labels. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3734149_d2
title: Additional file 2: of High pre-diagnosis attrition among patients with presumptive MDR-TB: an operational research from Bhopal district, India

description: Codebook/Data documentation sheet; Description of file: This file contains details of the fields including values (codes) and value labels. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3734155_d1
title: Additional file 1: of Discrimination of three genetically close Aspergillus species by using high resolution melting analysis applied to indoor air as case study

description: Normalized melt curves and difference curves obtained for each Aspergillus strain used during the development of the HRM assay (XLSX 105Â kb)
DOI: 10.6084/m9.figshare.c.3734137_d3
title: Additional file 8: of Image analysis driven single-cell analytics for systems microbiology

description: SalPhase time-lapse movie ground truth table. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3734158_d1.v1
title: MOESM1 of 
                     Pichia pastoris versus Saccharomyces cerevisiae: a case study on the recombinant production of human granulocyte-macrophage colony-stimulating factor

description: Additional file 1. Results of fed-batch fermentation process of P. pastoris X33::hgmcsf and S. cerevisiae BY4742/pYES2-hgmcsf.
DOI: 10.6084/m9.figshare.c.3734158_d1
title: MOESM1 of 
                     Pichia pastoris versus Saccharomyces cerevisiae: a case study on the recombinant production of human granulocyte-macrophage colony-stimulating factor

description: Additional file 1. Results of fed-batch fermentation process of P. pastoris X33::hgmcsf and S. cerevisiae BY4742/pYES2-hgmcsf.
DOI: 10.6084/m9.figshare.c.3734155_d2.v1
title: Additional file 2: of Discrimination of three genetically close Aspergillus species by using high resolution melting analysis applied to indoor air as case study

description: Alignment of the 20 Aspergillus strains used for the HRM development (XLSX 3516Â kb)
DOI: 10.6084/m9.figshare.c.3734155_d5
title: Additional file 5: of Discrimination of three genetically close Aspergillus species by using high resolution melting analysis applied to indoor air as case study

description: Melting temperature obtained for the species from the Versicolores group (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3734194_d1.v1
title: Additional file 10 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S9. Connected components within the reduced set of rewired proteins. Listed are all connected components (CCs) of the direction-specific subnetworks of the reference PPIN (up- and downregulated interactions) defined by the reduced set of rewired proteins. We only included CCs spanning at least 3 proteins. For each CC, we report the number of proteins that were members of the component, the direction of the regulation, and which CORUM complexes were completely included in the component. The size of the respective complexes is given in brackets. (XLSX 16.5 kb)
DOI: 10.6084/m9.figshare.c.3734194_d1
title: Additional file 10 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S9. Connected components within the reduced set of rewired proteins. Listed are all connected components (CCs) of the direction-specific subnetworks of the reference PPIN (up- and downregulated interactions) defined by the reduced set of rewired proteins. We only included CCs spanning at least 3 proteins. For each CC, we report the number of proteins that were members of the component, the direction of the regulation, and which CORUM complexes were completely included in the component. The size of the respective complexes is given in brackets. (XLSX 16.5 kb)
DOI: 10.6084/m9.figshare.c.3734194_d6
title: Additional file 3 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S2. Occurrence of each considered type of transcriptomic alteration per transition. Shown are the number of rewiring events for all observed types of transcriptomic alterations when only exclusive causes were considered. (XLSX 9.79 kb)
DOI: 10.6084/m9.figshare.c.3734194_d7.v1
title: Additional file 4 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S3. Pathway enrichment analysis of rewiring events controlled by different types of regulation. Listed are pathways for which annotated interactions could be associated with rewiring events across all transitions that were caused by a certain type of regulation. The exact methodology is described in the â  Methodsâ   section. In all tables, significantly enriched pathway terms (adj.p&lt;0.05) were marked in green. Very small p-values were reported as 0.0 due to numerical reasons (computed in Python using SciPy version 0.17 [114]). (XLSX 168 kb)
DOI: 10.6084/m9.figshare.c.3734194_d7
title: Additional file 4 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S3. Pathway enrichment analysis of rewiring events controlled by different types of regulation. Listed are pathways for which annotated interactions could be associated with rewiring events across all transitions that were caused by a certain type of regulation. The exact methodology is described in the â  Methodsâ   section. In all tables, significantly enriched pathway terms (adj.p&lt;0.05) were marked in green. Very small p-values were reported as 0.0 due to numerical reasons (computed in Python using SciPy version 0.17 [114]). (XLSX 168 kb)
DOI: 10.6084/m9.figshare.c.3734194_d8.v1
title: Additional file 5 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S4. Association of rewiring events with protein complexes. Listed are all rewiring events that affected at least one human CORUM complex [56] separated by transition, type of regulation, and direction. (XLSX 193 kb)
DOI: 10.6084/m9.figshare.c.3734194_d8
title: Additional file 5 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S4. Association of rewiring events with protein complexes. Listed are all rewiring events that affected at least one human CORUM complex [56] separated by transition, type of regulation, and direction. (XLSX 193 kb)
DOI: 10.6084/m9.figshare.c.3734233_d1.v1
title: MOESM1 of Single nucleotide polymorphisms in the bovine MHC region of Japanese Black cattle are associated with bovine leukemia virus proviral load

description: Additional file 1: Table S1. Genes around rs110616206 SNP (Tab "CNTN3") and rs29026690 and rs17872126 SNPs (Tab "BTA23").
DOI: 10.6084/m9.figshare.c.3734194_d9
title: Additional file 6 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S5. Pathway enrichment analysis of rewiring events controlled by different types of regulation separated by transition and direction. Listed are pathways for which annotated interactions could be associated with rewiring events that were caused in a certain transition in a certain direction by a certain type of regulation. The exact methodology is described in the â  Methodsâ   section. Significantly enriched pathway terms (adj.p&lt;0.05) were marked in green. Very small p-values were reported as 0.0 due to numerical reasons (computed in Python using SciPy version 0.17 [114]). (XLSX 455 kb)
DOI: 10.6084/m9.figshare.c.3734194_d9.v1
title: Additional file 6 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S5. Pathway enrichment analysis of rewiring events controlled by different types of regulation separated by transition and direction. Listed are pathways for which annotated interactions could be associated with rewiring events that were caused in a certain transition in a certain direction by a certain type of regulation. The exact methodology is described in the â  Methodsâ   section. Significantly enriched pathway terms (adj.p&lt;0.05) were marked in green. Very small p-values were reported as 0.0 due to numerical reasons (computed in Python using SciPy version 0.17 [114]). (XLSX 455 kb)
DOI: 10.6084/m9.figshare.c.3734233_d1
title: MOESM1 of Single nucleotide polymorphisms in the bovine MHC region of Japanese Black cattle are associated with bovine leukemia virus proviral load

description: Additional file 1: Table S1. Genes around rs110616206 SNP (Tab "CNTN3") and rs29026690 and rs17872126 SNPs (Tab "BTA23").
DOI: 10.6084/m9.figshare.c.3734194_d10.v1
title: Additional file 7 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S6. Sizes of resulting small sets of likely changes in the transcriptome that explain the rewiring in each transition. Listed are the sizes of the resulting small sets of likely changes in the transcriptome that explain the rewiring in each transition, the overall number of rewired interactions for comparison, as well as the number of proteins that are affected by the rewiring. (XLSX 455 kb)
DOI: 10.6084/m9.figshare.c.3734194_d10
title: Additional file 7 of Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare

description: Table S6. Sizes of resulting small sets of likely changes in the transcriptome that explain the rewiring in each transition. Listed are the sizes of the resulting small sets of likely changes in the transcriptome that explain the rewiring in each transition, the overall number of rewired interactions for comparison, as well as the number of proteins that are affected by the rewiring. (XLSX 455 kb)
DOI: 10.6084/m9.figshare.c.3734254_d2
title: MOESM2 of Comparison of six methods to estimate adherence in an ART-naĂŻve cohort in a resource-poor setting: which best predicts virological and resistance outcomes?

description: Additional file 2. Study data on which manuscript analyses are based.
DOI: 10.6084/m9.figshare.c.3734269_d2.v1
title: Additional file 2: of Using structural knowledge in the protein data bank to inform the search for potential host-microbe protein interactions in sequence space: application to Mycobacterium tuberculosis

description: Complete list of domain-domain interactions from iPfam. Column headers: 1) Pfam ID of domain 1; 2) Pfam ID of domain 2; 3) PDB chain ID of domain 1; 4) PDB chain ID of domain 2; 5) Uniprot accession of PDB chain 1; 6) Uniprot accession of PDB chain 2. (TXT 6425Â kb)
DOI: 10.6084/m9.figshare.c.3734272_d2.v1
title: MOESM2 of Pattern of acute organophosphorus poisoning at University of Gondar Teaching Hospital, Northwest Ethiopia

description: Additional file 2. Utilized data.
DOI: 10.6084/m9.figshare.c.3734269_d2
title: Additional file 2: of Using structural knowledge in the protein data bank to inform the search for potential host-microbe protein interactions in sequence space: application to Mycobacterium tuberculosis

description: Complete list of domain-domain interactions from iPfam. Column headers: 1) Pfam ID of domain 1; 2) Pfam ID of domain 2; 3) PDB chain ID of domain 1; 4) PDB chain ID of domain 2; 5) Uniprot accession of PDB chain 1; 6) Uniprot accession of PDB chain 2. (TXT 6425Â kb)