cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10657213
title: Data and geometries for "Understanding X-ray absorption in liquid water using triple excitations in multilevel coupled cluster theory"

description: Geometries and raw and processed data for the paper "Understanding X-ray absorption in liquid water usingtriple excitations in multilevel coupled cluster theory"

This work has received funding from the European Research Council (ERC)under the European Union’s Horizon 2020 Research and Innovation Program(grant agreement no. 101020016 and 860553), the Research Council of Norway through FRINATEK (project no. 275506), the Swedish Research Council (grant agreement no. 2021-04521), the Independent Research Fund Denmark--Natural Sciences, DFF-RP2 (grant no. 7014-00258B)Computing resources from UNINETT Sigma2—the National Infrastructure for High Performance Computingand Data Storage in Norway (project no. NN2962k),from DeIC—Danish Infrastructure Cooperation (grant no. DeiC-DTU-N3-2023027), and from the Swiss National Supercomputing Centre  (project ID uzh1).
DOI: 10.5281/zenodo.8140500
title: Data and geometries for "Understanding X-ray absorption in liquid water using triple excitations in multilevel coupled cluster theory"

description: Geometries and raw and processed data for the paper "Understanding X-ray absorption in liquid water usingtriple excitations in multilevel coupled cluster theory"

This work has received funding from the European Research Council (ERC)under the European Union’s Horizon 2020 Research and Innovation Program(grant agreement no. 101020016 and 860553), the Research Council of Norway through FRINATEK (project no. 275506), the Swedish Research Council (grant agreement no. 2021-04521), the Independent Research Fund Denmark--Natural Sciences, DFF-RP2 (grant no. 7014-00258B)Computing resources from UNINETT Sigma2—the National Infrastructure for High Performance Computingand Data Storage in Norway (project no. NN2962k),from DeIC—Danish Infrastructure Cooperation (grant no. DeiC-DTU-N3-2023027), and from the Swiss National Supercomputing Centre  (project ID uzh1).
DOI: 10.5281/zenodo.8140501
title: Data and geometries for "Insights into the electronic structure of liquid water using advanced ab initio charge transfer analysis"

description: Geometries and raw data for the paper "Insights into the electronic structure of liquid water using advanced ab initio charge transfer analysis" This work has received funding from the European Research Council (ERC)<br> under the European Union’s Horizon 2020 Research and Innovation Program<br> (grant agreement no. 101020016 and 860553), the Research Council of Norway through FRINATEK (project no. 275506), the Swedish Research Council (grant agreement no. 2021-04521), the Independent Research Fund Denmark--Natural Sciences, DFF-RP2 (grant no. 7014-00258B)<br> Computing resources from UNINETT Sigma2—the National Infrastructure for High Performance Computing<br> and Data Storage in Norway (project no. NN2962k),<br> from DeIC—Danish Infrastructure Cooperation (grant no. DeiC-DTU-N3-2023027), and from the Swiss National Supercomputing Centre (project ID uzh1).
DOI: 10.6084/m9.figshare.12812389
title: Additional file 10 of A SNP-mediated lncRNA (LOC146880) and microRNA (miR-539-5p) interaction and its potential impact on the NSCLC risk

description: Additional file 10. Distribution of SNP rs140618127 in different cohorts
DOI: 10.6084/m9.figshare.12812497.v1
title: Additional file 5 of Long noncoding RNA ZFPM2-AS1 acts as a miRNA sponge and promotes cell invasion through regulation of miR-139/GDF10 in hepatocellular carcinoma

description: Additional file 5.
DOI: 10.6084/m9.figshare.21201072
title: Cardiovascular Health and Atrial Fibrillation or Flutter: A Cross-Sectional Study from ELSA-Brasil

description: Abstract Background The association between ideal cardiovascular health (ICVH) status and atrial fibrillation or flutter (AFF) diagnosis has been less studied compared to other cardiovascular diseases. Objective To analyze the association between AFF diagnosis and ICVH metrics and scores in the Brazilian Longitudinal Study of Adult Health (ELSA-Brasil). Methods This study analyzed data from 13,141 participants with complete data. Electrocardiographic tracings were coded according to the Minnesota Coding System, in a centralized reading center. ICVH metrics (diet, physical activity, body mass index, smoking, blood pressure, fasting plasma glucose, and total cholesterol) and scores were calculated as proposed by the American Heart Association. Crude and adjusted binary logistic regression models were built to analyze the association of ICVH metrics and scores with AFF diagnosis. Significance level was set at 0.05. Results The sample had a median age of 55 years and 54.4% were women. In adjusted models, ICVH scores were not significantly associated with prevalent AFF diagnosis (odds ratio [OR]:0.96; 95% confidence interval [95% CI]:0.80-1.16; p=0.70). Ideal blood pressure (OR:0.33; 95% CI:0.15–0.74; p=0.007) and total cholesterol (OR:1.88; 95% CI:1.19–2.98; p=0.007) profiles were significantly associated with AFF diagnosis. Conclusions No significant associations were identified between global ICVH scores and AFF diagnosis after multivariable adjustment in our analyses, at least partially due to the antagonistic associations of AFF with blood pressure and total cholesterol ICVH metrics. Our results suggest that estimating the prevention of AFF burden using global ICVH scores may not be adequate, and ICVH metrics should be considered in separate.
DOI: 10.6084/m9.figshare.12812485
title: Additional file 1 of Long noncoding RNA ZFPM2-AS1 acts as a miRNA sponge and promotes cell invasion through regulation of miR-139/GDF10 in hepatocellular carcinoma

description: Additional file 1.
DOI: 10.6084/m9.figshare.12812485.v1
title: Additional file 1 of Long noncoding RNA ZFPM2-AS1 acts as a miRNA sponge and promotes cell invasion through regulation of miR-139/GDF10 in hepatocellular carcinoma

description: Additional file 1.
DOI: 10.6084/m9.figshare.12806050
title: Additional file 16 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 16: Table S9. The significantly regulated enzymes in the proteomic data corresponding to our previous metabolomic data.
DOI: 10.6084/m9.figshare.12812491.v1
title: Additional file 3 of Long noncoding RNA ZFPM2-AS1 acts as a miRNA sponge and promotes cell invasion through regulation of miR-139/GDF10 in hepatocellular carcinoma

description: Additional file 3.
DOI: 10.6084/m9.figshare.21201072.v1
title: Cardiovascular Health and Atrial Fibrillation or Flutter: A Cross-Sectional Study from ELSA-Brasil

description: Abstract Background The association between ideal cardiovascular health (ICVH) status and atrial fibrillation or flutter (AFF) diagnosis has been less studied compared to other cardiovascular diseases. Objective To analyze the association between AFF diagnosis and ICVH metrics and scores in the Brazilian Longitudinal Study of Adult Health (ELSA-Brasil). Methods This study analyzed data from 13,141 participants with complete data. Electrocardiographic tracings were coded according to the Minnesota Coding System, in a centralized reading center. ICVH metrics (diet, physical activity, body mass index, smoking, blood pressure, fasting plasma glucose, and total cholesterol) and scores were calculated as proposed by the American Heart Association. Crude and adjusted binary logistic regression models were built to analyze the association of ICVH metrics and scores with AFF diagnosis. Significance level was set at 0.05. Results The sample had a median age of 55 years and 54.4% were women. In adjusted models, ICVH scores were not significantly associated with prevalent AFF diagnosis (odds ratio [OR]:0.96; 95% confidence interval [95% CI]:0.80-1.16; p=0.70). Ideal blood pressure (OR:0.33; 95% CI:0.15–0.74; p=0.007) and total cholesterol (OR:1.88; 95% CI:1.19–2.98; p=0.007) profiles were significantly associated with AFF diagnosis. Conclusions No significant associations were identified between global ICVH scores and AFF diagnosis after multivariable adjustment in our analyses, at least partially due to the antagonistic associations of AFF with blood pressure and total cholesterol ICVH metrics. Our results suggest that estimating the prevention of AFF burden using global ICVH scores may not be adequate, and ICVH metrics should be considered in separate.
DOI: 10.6084/m9.figshare.12806041
title: Additional file 13 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 13: Table S6. Clustered KEGG pathway assay for the common DEPs based on the categories in males and females.
DOI: 10.6084/m9.figshare.12806047
title: Additional file 15 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 15: Table S8. The comparison of results obtained by 2D-DIGE and TMT labeling methods.
DOI: 10.6084/m9.figshare.12812494.v1
title: Additional file 4 of Long noncoding RNA ZFPM2-AS1 acts as a miRNA sponge and promotes cell invasion through regulation of miR-139/GDF10 in hepatocellular carcinoma

description: Additional file 4.
DOI: 10.6084/m9.figshare.12812497
title: Additional file 5 of Long noncoding RNA ZFPM2-AS1 acts as a miRNA sponge and promotes cell invasion through regulation of miR-139/GDF10 in hepatocellular carcinoma

description: Additional file 5.
DOI: 10.6084/m9.figshare.12806038
title: Additional file 12 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 12: Table S5. Common and unique DEPs based on the categories.
DOI: 10.6084/m9.figshare.12812500.v1
title: Additional file 6 of Long noncoding RNA ZFPM2-AS1 acts as a miRNA sponge and promotes cell invasion through regulation of miR-139/GDF10 in hepatocellular carcinoma

description: Additional file 6.
DOI: 10.6084/m9.figshare.17006975.v1
title: Additional file 8 of Whole-transcriptome sequencing reveals a vernalization-related ceRNA regulatory network in chinese cabbage (Brassica campestris L. ssp. pekinensis)

description: Table S8. Primers used for qRT-PCR.
DOI: 10.6084/m9.figshare.12806035.v1
title: Additional file 11 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 11: Table S4. Detailed information of DEPs by paired comparisons among W, P, and T in males and females.
DOI: 10.6084/m9.figshare.12806032
title: Additional file 10 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 10: Table S3. Bioinformatic elaboration for functional GO term and KEGG pathway enrichment via DAVID analysis.
DOI: 10.6084/m9.figshare.12806038.v1
title: Additional file 12 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 12: Table S5. Common and unique DEPs based on the categories.
DOI: 10.6084/m9.figshare.12806044.v1
title: Additional file 14 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 14: Table S7. Clustered KEGG pathway assay for the unique DEPs based on the categories in males and females.
DOI: 10.6084/m9.figshare.12812494
title: Additional file 4 of Long noncoding RNA ZFPM2-AS1 acts as a miRNA sponge and promotes cell invasion through regulation of miR-139/GDF10 in hepatocellular carcinoma

description: Additional file 4.
DOI: 10.6084/m9.figshare.12806044
title: Additional file 14 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 14: Table S7. Clustered KEGG pathway assay for the unique DEPs based on the categories in males and females.
DOI: 10.6084/m9.figshare.12806056
title: Additional file 18 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 18: Table S11. Detailed information for the primary and secondary antibodies.
DOI: 10.6084/m9.figshare.17006957
title: Additional file 2 of Whole-transcriptome sequencing reveals a vernalization-related ceRNA regulatory network in chinese cabbage (Brassica campestris L. ssp. pekinensis)

description: Table S2. Summary of all mRNAs, lncRNAs, circRNAs, and miRNAs identified in this study.
DOI: 10.6084/m9.figshare.17006963
title: Additional file 4 of Whole-transcriptome sequencing reveals a vernalization-related ceRNA regulatory network in chinese cabbage (Brassica campestris L. ssp. pekinensis)

description: Table S4. List of GO terms for differentially expressed (DE) mRNAs, lncRNAs, circRNAs, and miRNAs.
DOI: 10.6084/m9.figshare.12806047.v1
title: Additional file 15 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 15: Table S8. The comparison of results obtained by 2D-DIGE and TMT labeling methods.
DOI: 10.6084/m9.figshare.12812500
title: Additional file 6 of Long noncoding RNA ZFPM2-AS1 acts as a miRNA sponge and promotes cell invasion through regulation of miR-139/GDF10 in hepatocellular carcinoma

description: Additional file 6.
DOI: 10.6084/m9.figshare.17006960
title: Additional file 3 of Whole-transcriptome sequencing reveals a vernalization-related ceRNA regulatory network in chinese cabbage (Brassica campestris L. ssp. pekinensis)

description: Table S3. Summary of differentially expressed (DE) mRNAs, lncRNAs, circRNAs, and miRNAs identified in this study.
DOI: 10.6084/m9.figshare.12806041.v1
title: Additional file 13 of Proteomic analysis revealed common, unique and systemic signatures in gender-dependent hepatocarcinogenesis

description: Additional file 13: Table S6. Clustered KEGG pathway assay for the common DEPs based on the categories in males and females.
DOI: 10.6084/m9.figshare.14278518.v1
title: Recommendations for assessing earthworm populations in Brazilian ecosystems

description: Abstract: Earthworms are often related to fertile soils and are also frequently used as environmental quality indicators. However, to optimize their use as bioindicators, earthworm populations must be evaluated together with the environmental and anthropogenic variables regulating their communities. This review sought to identify the earthworm-sampling, soil chemical and physical, and environmental and anthropogenic attributes evaluated in 124 published studies that quantified earthworm abundance (&gt;7,300 samples) in 765 sites with different types of climate, soils, land use, and management systems in Brazil. Soil chemical and physical attributes (except pH) were less reported (≤50% of studies) than other environmental variables such as sampling date, altitude, temperature, precipitation, climate and soil type, and land use (&gt;50% of studies). Earthworms were rarely identified (24%) and few studies (31%) measured their biomass, although most provided adequate information on sampling protocol. Based on their importance in regulating earthworm populations, a set of variables is proposed to be evaluated when studying earthworm communities and other macrofauna groups. This should help guide future studies on earthworms in Brazil and other countries, optimize data collection and replicability, allow comparisons between different studies, and promote the use of earthworms as soil quality bioindicators.
DOI: 10.6084/m9.figshare.14278523
title: Physiological and biochemical changes in Cedrela fissilis seeds during storage

description: Abstract: The objective of this work was to evaluate the effect of storage on the physiological quality of cedar (Cedrela fissilis) seeds, as well as to correlate the germination and vigor of the seeds with their main biochemical changes. The experiments were carried out in a completely randomized design, in a 3×5 factorial arrangement (three environments × five storage periods). Seeds were stored for 0, 135, 280, 381, and 515 days in: a humidity chamber at 5±2ºC and 80% relative humidity, a drying chamber at 20±2ºC and 60% relative humidity, and an uncontrolled environment (laboratory) at 16±10ºC and 60±25% relative humidity. In all storage periods, the content of moisture on a wet basis and the percentages of proteins, lipids, total carbohydrates, and ash were evaluated. For the viability and vigor tests, the percentage of germination and mean germination time were calculated. At sampling time, seeds showed 11.5% water content, 85.5% germination, and mean germination time of 13.5 days, and all were negatively influenced by storage period. Protein percentage showed a downward trend, while that of carbohydrates increased as the storage period was extended. Seed germination and vigor reduce drastically with storage.
DOI: 10.6084/m9.figshare.14278523.v1
title: Physiological and biochemical changes in Cedrela fissilis seeds during storage

description: Abstract: The objective of this work was to evaluate the effect of storage on the physiological quality of cedar (Cedrela fissilis) seeds, as well as to correlate the germination and vigor of the seeds with their main biochemical changes. The experiments were carried out in a completely randomized design, in a 3×5 factorial arrangement (three environments × five storage periods). Seeds were stored for 0, 135, 280, 381, and 515 days in: a humidity chamber at 5±2ºC and 80% relative humidity, a drying chamber at 20±2ºC and 60% relative humidity, and an uncontrolled environment (laboratory) at 16±10ºC and 60±25% relative humidity. In all storage periods, the content of moisture on a wet basis and the percentages of proteins, lipids, total carbohydrates, and ash were evaluated. For the viability and vigor tests, the percentage of germination and mean germination time were calculated. At sampling time, seeds showed 11.5% water content, 85.5% germination, and mean germination time of 13.5 days, and all were negatively influenced by storage period. Protein percentage showed a downward trend, while that of carbohydrates increased as the storage period was extended. Seed germination and vigor reduce drastically with storage.
DOI: 10.6084/m9.figshare.14278526
title: Residue of propolis extract in bovine diets with increasing levels of protein on rumen fermentation

description: Abstract: The objective of this work was to evaluate the effect of the residue from the extraction of propolis, added to bovine diets with increasing levels of protein, on ruminal fermentation in vitro. For this, the in vitro gas production technique was used. Incubation was carried out with inocula from three fistulated cows, in three periods. In each period, a cow received a daily dose of 100 g propolis residue. Four diets were evaluated: corn silage (control); and 25, 50, and 75% concentrate based on soybean meal. The following were determined: kinetics of rumen fermentation; dry matter degradation; production of gases, volatile fatty acids (acetate, propionate, and butyrate), methane, and ammonia nitrogen; and pH. The inclusion of 14.4, 15.1, and 9.5% propolis residue, respectively, to 25, 50, and 75% concentrate increased the production of gases from the degradation of fibrous carbohydrates, when compared with the control. The propolis residue reduces methane production and the acetate:propionate ratio at all tested concentrate inclusion levels.
DOI: 10.6084/m9.figshare.14278526.v1
title: Residue of propolis extract in bovine diets with increasing levels of protein on rumen fermentation

description: Abstract: The objective of this work was to evaluate the effect of the residue from the extraction of propolis, added to bovine diets with increasing levels of protein, on ruminal fermentation in vitro. For this, the in vitro gas production technique was used. Incubation was carried out with inocula from three fistulated cows, in three periods. In each period, a cow received a daily dose of 100 g propolis residue. Four diets were evaluated: corn silage (control); and 25, 50, and 75% concentrate based on soybean meal. The following were determined: kinetics of rumen fermentation; dry matter degradation; production of gases, volatile fatty acids (acetate, propionate, and butyrate), methane, and ammonia nitrogen; and pH. The inclusion of 14.4, 15.1, and 9.5% propolis residue, respectively, to 25, 50, and 75% concentrate increased the production of gases from the degradation of fibrous carbohydrates, when compared with the control. The propolis residue reduces methane production and the acetate:propionate ratio at all tested concentrate inclusion levels.
DOI: 10.6084/m9.figshare.14278527
title: Deoxynivalenol content, phenolic compounds, and antioxidant activity of wheat flour after debranning process

description: Abstract: The objective of this work was to evaluate the effect of the debranning process on the deoxynivalenol (DON) content, phenolic compounds, and antioxidant activity of wheat flours, in order to determine which milling technology provides the safest and most nutritional wheat products. Grain samples from the BRS Marcante, BRS Reponte, and BRS 374 wheat (Triticum aestivum) cultivars were used to obtain both whole-wheat and white flours. For whole-wheat, grains were debranned at different times (20 and 40 s). The debranning process significantly reduced the DON content in the whole-wheat flours from all cultivars. The DON concentration decreased 22 and 28% in the 20 and 40 s debranning treatments, respectively, when compared with the treatment without debranning. In addition, phenolic compound content and antioxidant capacity are significantly higher in the whole-wheat flours. The debranning process contributes to the production of safer and healthier foods, by reducing DON content and retaining phenolic compounds and antioxidant activity in whole-wheat flours.
DOI: 10.6084/m9.figshare.14278527.v1
title: Deoxynivalenol content, phenolic compounds, and antioxidant activity of wheat flour after debranning process

description: Abstract: The objective of this work was to evaluate the effect of the debranning process on the deoxynivalenol (DON) content, phenolic compounds, and antioxidant activity of wheat flours, in order to determine which milling technology provides the safest and most nutritional wheat products. Grain samples from the BRS Marcante, BRS Reponte, and BRS 374 wheat (Triticum aestivum) cultivars were used to obtain both whole-wheat and white flours. For whole-wheat, grains were debranned at different times (20 and 40 s). The debranning process significantly reduced the DON content in the whole-wheat flours from all cultivars. The DON concentration decreased 22 and 28% in the 20 and 40 s debranning treatments, respectively, when compared with the treatment without debranning. In addition, phenolic compound content and antioxidant capacity are significantly higher in the whole-wheat flours. The debranning process contributes to the production of safer and healthier foods, by reducing DON content and retaining phenolic compounds and antioxidant activity in whole-wheat flours.