cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13647650
title: RFX3 is essential for the generation of functional human pancreatic islets from stem cells (1)

description: Wild type iPSCs (WT-iPSCs) generated and fully characterized in our laboratory were used for RFX3 knockout iPSCs (RFX3 KO iPSCs) generation. WT-iPSCs and RFX3 KO iPSCs were differentiated into pancreatic islet cells to uncover RFX3’s role during pancreatic islet development as described in the article titled “RFX3 is required for the development of human pluripotent-stem cell-derived pancreatic islets” by Memon et al. The dataset represents RNA-seq data generated from pancreatic progenitors (PPs) derived from WT-iPSCs and RFX3 KO iPSCs. 

The file name: Sample name _overall sample number_read direction_001 where:

- PPs-WT-Rep1: pancreatic progenitors (PPs) derived from WT-iPSCs, replicate 1.

- PPs-WT-Rep2: pancreatic progenitors (PPs) derived from WT-iPSCs, replicate 2.

- PPs-WT-Rep3: pancreatic progenitors (PPs) derived from WT-iPSCs, replicate 3.

- PPs-KO1-Rep1: pancreatic progenitors (PPs) derived from RFX3 KO1 iPSCs, replicate 1.

- PPs-KO1-Rep2: pancreatic progenitors (PPs) derived from RFX3 KO1 iPSCs, replicate 2.

- PPs-KO1-Rep3: pancreatic progenitors (PPs) derived from RFX3 KO1 iPSCs, replicate 3.

- PPs-KO2-Rep1: pancreatic progenitors (PPs) derived from RFX3 KO2 iPSCs, replicate 1.

- PPs-KO2-Rep2: pancreatic progenitors (PPs) derived from RFX3 KO2 iPSCs, replicate 2.

- PPs-KO2-Rep3: pancreatic progenitors (PPs) derived from RFX3 KO2 iPSCs, replicate 3.

- Read direction: R1 (Forward), R2 (Reverse).
DOI: 10.5281/zenodo.13647651
title: RFX3 is essential for the generation of functional human pancreatic islets from stem cells (1)

description: Wild type iPSCs (WT-iPSCs) generated and fully characterized in our laboratory were used for RFX3 knockout iPSCs (RFX3 KO iPSCs) generation. WT-iPSCs and RFX3 KO iPSCs were differentiated into pancreatic islet cells to uncover RFX3’s role during pancreatic islet development as described in the article titled “RFX3 is required for the development of human pluripotent-stem cell-derived pancreatic islets” by Memon et al. The dataset represents RNA-seq data generated from pancreatic progenitors (PPs) derived from WT-iPSCs and RFX3 KO iPSCs. 

The file name: Sample name _overall sample number_read direction_001 where:

- PPs-WT-Rep1: pancreatic progenitors (PPs) derived from WT-iPSCs, replicate 1.

- PPs-WT-Rep2: pancreatic progenitors (PPs) derived from WT-iPSCs, replicate 2.

- PPs-WT-Rep3: pancreatic progenitors (PPs) derived from WT-iPSCs, replicate 3.

- PPs-KO1-Rep1: pancreatic progenitors (PPs) derived from RFX3 KO1 iPSCs, replicate 1.

- PPs-KO1-Rep2: pancreatic progenitors (PPs) derived from RFX3 KO1 iPSCs, replicate 2.

- PPs-KO1-Rep3: pancreatic progenitors (PPs) derived from RFX3 KO1 iPSCs, replicate 3.

- PPs-KO2-Rep1: pancreatic progenitors (PPs) derived from RFX3 KO2 iPSCs, replicate 1.

- PPs-KO2-Rep2: pancreatic progenitors (PPs) derived from RFX3 KO2 iPSCs, replicate 2.

- PPs-KO2-Rep3: pancreatic progenitors (PPs) derived from RFX3 KO2 iPSCs, replicate 3.

- Read direction: R1 (Forward), R2 (Reverse).
DOI: 10.5517/ccdc.csd.cc2l200q
title: CCDC 2385202: Experimental Crystal Structure Determination

description: Related Article: Cheng Minjing|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqcd3
title: CCDC 2404775: Experimental Crystal Structure Determination

description: Related Article: Wang Shu-Yi|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqnss
title: CCDC 2405066: Experimental Crystal Structure Determination

description: Related Article: Wang Shu-Yi|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqq8b
title: CCDC 2405112: Experimental Crystal Structure Determination

description: Related Article: Daven Foster, Alexandre N. Sobolev, Reto Dorta|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqq9c
title: CCDC 2405113: Experimental Crystal Structure Determination

description: Related Article: Daven Foster, Alexandre N. Sobolev, Reto Dorta|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqqbd
title: CCDC 2405114: Experimental Crystal Structure Determination

description: Related Article: Daven Foster, Alexandre N. Sobolev, Reto Dorta|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqqcf
title: CCDC 2405115: Experimental Crystal Structure Determination

description: Related Article: Daven Foster, Alexandre N. Sobolev, Reto Dorta|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqqdg
title: CCDC 2405116: Experimental Crystal Structure Determination

description: Related Article: Daven Foster, Alexandre N. Sobolev, Reto Dorta|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.qenna5
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Fossil, Living Specimen, Occurrence evidence)",
 "Continent is one of (Europe, North America, South America)",
 "OccurrenceStatus is Present",
 "TaxonKey is Elaphurus davidianus Milne-Edwards, 1866"
 ]
}

 The dataset includes 118 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006884-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2lqvmt
title: CCDC 2405247: Experimental Crystal Structure Determination

description: Related Article: Christian Kleeberg|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.u967bu
title: Occurrence Download

description: A dataset containing 611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuarina glauca Sieber)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 611 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006883-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.auxuzc
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Samolus valerandi L.",
 "Geometry POLYGON((-4.57907617500001 39.884719509, -4.57907617500001 41.165844755, -3.05298331400002 41.165844755, -3.05298331400002 39.884719509, -4.57907617500001 39.884719509))"
 ]
}

 The dataset includes 32 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006882-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jm83zx
title: Occurrence Download

description: A dataset containing 139618 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-36 33, -20 33, -20 43, -36 43, -36 33))",
 "TaxonKey is one of (Balaenoptera physalus (Linnaeus, 1758), Balaenoptera borealis Lesson, 1828, Balaenoptera musculus (Linnaeus, 1758), Megaptera novaeangliae (Borowski, 1781), Balaenoptera edeni Anderson, 1879, Balaenoptera acutorostrata Lacépède, 1804, Stenella frontalis (G.Cuvier, 1829), Tursiops truncatus (Montagu, 1821), Pseudorca crassidens (Owen, 1846), Lagenodelphis hosei Fraser, 1956, Globicephala melas (Traill, 1809), Orcinus orca (Linnaeus, 1758), Grampus griseus (G.Cuvier, 1812), Steno bredanensis (G.Cuvier, 1828), Delphinus delphis Linnaeus, 1758, Globicephala macrorhynchus Gray, 1846, Stenella coeruleoalba (Meyen, 1833), Mesoplodon densirostris (Blainville, 1817), Ziphius cavirostris G.Cuvier, 1823, Mesoplodon europaeus (Gervais, 1855), Hyperoodon ampullatus (Forster, 1770), Mesoplodon bidens (Sowerby, 1804), Mesoplodon mirus True, 1913, Kogia sima (Owen, 1866), Kogia breviceps (Blainville, 1838), Physeter macrocephalus Linnaeus, 1758, Eubalaena glacialis (Müller, 1776), Phocoena phocoena (Linnaeus, 1758))",
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 139618 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006842-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2yk5n4
title: Occurrence Download

description: A dataset containing 1456373 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 1456373 records from 626 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006870-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13762054
title: RFX3 is essential for the generation of functional human pancreatic islets from stem cells (2)

description: Wild type iPSCs (WT-iPSCs) generated and fully characterized in our laboratory were used for RFX3 knockout iPSCs (RFX3 KO iPSCs) generation. WT-iPSCs and RFX3 KO iPSCs were differentiated into pancreatic islet cells to uncover RFX3’s role during pancreatic islet development as described in the article titled “RFX3 is required for the development of human pluripotent-stem cell-derived pancreatic islets” by Memon et al. The dataset represents RNA-seq data generated from pancreatic islets derived from WT-iPSCs and RFX3 KO iPSCs. 

The file name: Sample name _overall sample number_read direction_001 where:

- Islets-WT-Rep1: pancreatic islets derived from WT-iPSCs, replicate 1.

- Islets-WT-Rep2: pancreatic islets derived from WT-iPSCs, replicate 2.

- Islets-WT-Rep3: pancreatic islets derived from WT-iPSCs, replicate 3.

- Islets-KO1-Rep1: pancreatic islets derived from RFX3 KO1 iPSCs, replicate 1.

- Islets-KO1-Rep2: pancreatic islets derived from RFX3 KO1 iPSCs, replicate 2.

- Islets-KO1-Rep3: pancreatic islets derived from RFX3 KO1 iPSCs, replicate 3.

- Islets-KO2-Rep1: pancreatic islets derived from RFX3 KO2 iPSCs, replicate 1.

- Islets-KO2-Rep2: pancreatic islets derived from RFX3 KO2 iPSCs, replicate 2.

- Islets-KO2-Rep3: pancreatic islets derived from RFX3 KO2 iPSCs, replicate 3.

- Read direction: R1 (Forward), R2 (Reverse).
DOI: 10.5281/zenodo.13762055
title: RFX3 is essential for the generation of functional human pancreatic islets from stem cells (2)

description: Wild type iPSCs (WT-iPSCs) generated and fully characterized in our laboratory were used for RFX3 knockout iPSCs (RFX3 KO iPSCs) generation. WT-iPSCs and RFX3 KO iPSCs were differentiated into pancreatic islet cells to uncover RFX3’s role during pancreatic islet development as described in the article titled “RFX3 is required for the development of human pluripotent-stem cell-derived pancreatic islets” by Memon et al. The dataset represents RNA-seq data generated from pancreatic islets derived from WT-iPSCs and RFX3 KO iPSCs. 

The file name: Sample name _overall sample number_read direction_001 where:

- Islets-WT-Rep1: pancreatic islets derived from WT-iPSCs, replicate 1.

- Islets-WT-Rep2: pancreatic islets derived from WT-iPSCs, replicate 2.

- Islets-WT-Rep3: pancreatic islets derived from WT-iPSCs, replicate 3.

- Islets-KO1-Rep1: pancreatic islets derived from RFX3 KO1 iPSCs, replicate 1.

- Islets-KO1-Rep2: pancreatic islets derived from RFX3 KO1 iPSCs, replicate 2.

- Islets-KO1-Rep3: pancreatic islets derived from RFX3 KO1 iPSCs, replicate 3.

- Islets-KO2-Rep1: pancreatic islets derived from RFX3 KO2 iPSCs, replicate 1.

- Islets-KO2-Rep2: pancreatic islets derived from RFX3 KO2 iPSCs, replicate 2.

- Islets-KO2-Rep3: pancreatic islets derived from RFX3 KO2 iPSCs, replicate 3.

- Read direction: R1 (Forward), R2 (Reverse).
DOI: 10.5281/zenodo.14980006
title: Replication data for: Extensional perpendicular orthogonal quartz veins related to early Variscan Orogeny

description: Fieldclino measurement data from Almograve and Zambujeira do Mar to replicate the stereoplot in the paper: Extensional perpendicular orthogonal quartz veins related to early Variscan Orogeny
DOI: 10.5281/zenodo.14980007
title: Replication data for: Extensional perpendicular orthogonal quartz veins related to early Variscan Orogeny

description: Fieldclino measurement data from Almograve and Zambujeira do Mar to replicate the stereoplot in the paper: Extensional perpendicular orthogonal quartz veins related to early Variscan Orogeny
DOI: 10.5281/zenodo.14925059
title: Microwave Scattering Properties of Snowflakes Using the Discrete Dipole Approximation; single scattering plane, (part 1)

description: This dataset comprises detailed simulations of electromagnetic scattering properties of snowflakes, generated using J. Leinonen's aggregation model (https://github.com/jleinonen/aggregation). The model is described in:

Leinonen, J., and  Szyrmer, W. (2015),  Radar signatures of snowflake riming: A modeling study, Earth and Space Science,  2,  346– 358, doi:10.1002/2015EA000102.The snowflake structures are represented as 3D dipole arrangements, with each file containing attributes such as mass and particle dimensions.

Electromagnetic scattering properties were computed using the ADDA software, configured for vertically pointing radar with particles aligned along the X-axis. The output includes the Mueller matrix, scattering, and extinction cross-section values across various common radar frequencies. Simulation results are stored in text files, which can be easily linked to the corresponding snowflake structure files by filename.The structure files are stored in:Mroz, K. (2025). Microwave Scattering Properties of Snowflakes Using the Discrete Dipole Approximation [Data set]. Zenodo. https://doi.org/10.5281/zenodo.14886316
DOI: 10.5281/zenodo.14979672
title: Microwave Scattering Properties of Snowflakes Using the Discrete Dipole Approximation; single scattering plane, (part 2)

description: This dataset comprises detailed simulations of electromagnetic scattering properties of snowflakes, generated using J. Leinonen's aggregation model (https://github.com/jleinonen/aggregation). The model is described in:

Leinonen, J., and  Szyrmer, W. (2015),  Radar signatures of snowflake riming: A modeling study, Earth and Space Science,  2,  346– 358, doi:10.1002/2015EA000102.The snowflake structures are represented as 3D dipole arrangements, with each file containing attributes such as mass and particle dimensions.

Electromagnetic scattering properties were computed using the ADDA software, configured for vertically pointing radar with particles aligned along the X-axis. The output includes the Mueller matrix, scattering, and extinction cross-section values across various common radar frequencies. Simulation results are stored in text files, which can be easily linked to the corresponding snowflake structure files by filename.The structure files are stored in:Mroz, K. (2025). Microwave Scattering Properties of Snowflakes Using the Discrete Dipole Approximation [Data set]. Zenodo. https://doi.org/10.5281/zenodo.14886316
DOI: 10.5281/zenodo.14979673
title: Microwave Scattering Properties of Snowflakes Using the Discrete Dipole Approximation; single scattering plane, (part 2)

description: This dataset comprises detailed simulations of electromagnetic scattering properties of snowflakes, generated using J. Leinonen's aggregation model (https://github.com/jleinonen/aggregation). The model is described in:

Leinonen, J., and  Szyrmer, W. (2015),  Radar signatures of snowflake riming: A modeling study, Earth and Space Science,  2,  346– 358, doi:10.1002/2015EA000102.The snowflake structures are represented as 3D dipole arrangements, with each file containing attributes such as mass and particle dimensions.

Electromagnetic scattering properties were computed using the ADDA software, configured for vertically pointing radar with particles aligned along the X-axis. The output includes the Mueller matrix, scattering, and extinction cross-section values across various common radar frequencies. Simulation results are stored in text files, which can be easily linked to the corresponding snowflake structure files by filename.The structure files are stored in:Mroz, K. (2025). Microwave Scattering Properties of Snowflakes Using the Discrete Dipole Approximation [Data set]. Zenodo. https://doi.org/10.5281/zenodo.14886316
DOI: 10.15468/dl.386rcx
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Samolus valerandi L.",
 "Geometry POLYGON((-4.57907617500001 39.884719509, -4.57907617500001 41.165844755, -3.05298331400002 41.165844755, -3.05298331400002 39.884719509, -4.57907617500001 39.884719509))"
 ]
}

 The dataset includes 32 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006883-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2r2gw3
title: Occurrence Download

description: A dataset containing 7638 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Catalpa bignonioides Walter)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 7638 records from 341 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006889-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9bjth
title: Occurrence Download

description: A dataset containing 47549 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Month is one of (April, May, June, July)",
 "OccurrenceStatus is Present",
 "TaxonKey is Numenius arquata (Linnaeus, 1758)",
 "Year 2019-2024"
 ]
}

 The dataset includes 47549 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006890-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14980079
title: doodia_australis_spades_01.fasta.gz
DOI: 10.5281/zenodo.14980080
title: doodia_australis_spades_01.fasta.gz
DOI: 10.15468/dl.qyzdqj
title: Occurrence Download

description: A dataset containing 164125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marmota Blumenbach, 1779"
 ]
}

 The dataset includes 164125 records from 478 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006848-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3w3te6
title: Occurrence Download

description: A dataset listing the 12 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Butterfly distribution records for the UK from Butterfly Conservation, up to 2019",
 "Geometry POLYGON((0.3 52.4,0.4 52.4,0.4 52.5,0.3 52.5,0.3 52.4))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2015-2015"
 ]
}

 The dataset's 12 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006885-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.