cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9dgdrc
title: Occurrence Download

description: A dataset containing 27480 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Akebia quinata (Houtt.) Decne., Akebia trifoliata (Thunb.) Koidz., Fargesia spathacea Franch., Deutzia ×wilsonii Duthie, Fraxinus bungeana A.DC., Photinia serratifolia (Desf.) Kalkman, Tilia henryana Szyszyl., Tilia mandshurica Rupr. & Maxim., Tilia miqueliana Maxim., Parthenocissus tricuspidata (Siebold & Zucc.) Planch.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 27480 records from 429 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003980-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13903730
title: MangroveDB: A comprehensive online database for mangroves based on multi-omics data

description: Mangroves are dominant flora of intertidal zones along tropical and subtropical coastline around the world that offer important ecological and economic value. Recently, the genomes of mangroves have been decoded, and massive omics data were generated and deposited in the public databases. Reanalysis of multi-omics data can provide new biological insights excluded in the original studies. However, the requirements for computational resource and lack of bioinformatics skill for experimental researchers limit the effective use of the original data. To fill this gap, we uniformly processed 942 transcriptome data, 386 whole-genome sequencing data, and provided 13 reference genomes and 40 reference transcriptomes for 53 mangroves. Finally, we built an interactive web-based database platform MangroveDB (https://github.com/Jasonxu0109/MangroveDB), which was designed to provide comprehensive gene expression datasets to facilitate their exploration and equipped with several online analysis tools, including principal components analysis, differential gene expression analysis, tissue-specific gene expression analysis, GO and KEGG enrichment analysis. MangroveDB not only provides query functions about genes annotation, but also supports some useful visualization functions for analysis results, such as volcano plot, heatmap, dotplot, PCA plot, bubble plot, population structure etc. In conclusion, MangroveDB is a valuable resource for the mangroves research community to efficiently use the massive public omics datasets.
DOI: 10.5281/zenodo.13903731
title: MangroveDB: A comprehensive online database for mangroves based on multi-omics data

description: Mangroves are dominant flora of intertidal zones along tropical and subtropical coastline around the world that offer important ecological and economic value. Recently, the genomes of mangroves have been decoded, and massive omics data were generated and deposited in the public databases. Reanalysis of multi-omics data can provide new biological insights excluded in the original studies. However, the requirements for computational resource and lack of bioinformatics skill for experimental researchers limit the effective use of the original data. To fill this gap, we uniformly processed 942 transcriptome data, 386 whole-genome sequencing data, and provided 13 reference genomes and 40 reference transcriptomes for 53 mangroves. Finally, we built an interactive web-based database platform MangroveDB (https://github.com/Jasonxu0109/MangroveDB), which was designed to provide comprehensive gene expression datasets to facilitate their exploration and equipped with several online analysis tools, including principal components analysis, differential gene expression analysis, tissue-specific gene expression analysis, GO and KEGG enrichment analysis. MangroveDB not only provides query functions about genes annotation, but also supports some useful visualization functions for analysis results, such as volcano plot, heatmap, dotplot, PCA plot, bubble plot, population structure etc. In conclusion, MangroveDB is a valuable resource for the mangroves research community to efficiently use the massive public omics datasets.
DOI: 10.5281/zenodo.13906289
title: MangroveDB: A comprehensive online database for mangroves based on multi-omics data

description: Mangroves are dominant flora of intertidal zones along tropical and subtropical coastline around the world that offer important ecological and economic value. Recently, the genomes of mangroves have been decoded, and massive omics data were generated and deposited in the public databases. Reanalysis of multi-omics data can provide new biological insights excluded in the original studies. However, the requirements for computational resource and lack of bioinformatics skill for experimental researchers limit the effective use of the original data. To fill this gap, we uniformly processed 942 transcriptome data, 386 whole-genome sequencing data, and provided 13 reference genomes and 40 reference transcriptomes for 53 mangroves. Finally, we built an interactive web-based database platform MangroveDB (https://github.com/Jasonxu0109/MangroveDB), which was designed to provide comprehensive gene expression datasets to facilitate their exploration and equipped with several online analysis tools, including principal components analysis, differential gene expression analysis, tissue-specific gene expression analysis, GO and KEGG enrichment analysis. MangroveDB not only provides query functions about genes annotation, but also supports some useful visualization functions for analysis results, such as volcano plot, heatmap, dotplot, PCA plot, bubble plot, population structure etc. In conclusion, MangroveDB is a valuable resource for the mangroves research community to efficiently use the massive public omics datasets.
DOI: 10.5281/zenodo.13907062
title: MangroveDB: A comprehensive online database for mangroves based on multi-omics data

description: Mangroves are dominant flora of intertidal zones along tropical and subtropical coastline around the world that offer important ecological and economic value. Recently, the genomes of mangroves have been decoded, and massive omics data were generated and deposited in the public databases. Reanalysis of multi-omics data can provide new biological insights excluded in the original studies. However, the requirements for computational resource and lack of bioinformatics skill for experimental researchers limit the effective use of the original data. To fill this gap, we uniformly processed 942 transcriptome data, 386 whole-genome sequencing data, and provided 13 reference genomes and 40 reference transcriptomes for 53 mangroves. Finally, we built an interactive web-based database platform MangroveDB (https://github.com/Jasonxu0109/MangroveDB), which was designed to provide comprehensive gene expression datasets to facilitate their exploration and equipped with several online analysis tools, including principal components analysis, differential gene expression analysis, tissue-specific gene expression analysis, GO and KEGG enrichment analysis. MangroveDB not only provides query functions about genes annotation, but also supports some useful visualization functions for analysis results, such as volcano plot, heatmap, dotplot, PCA plot, bubble plot, population structure etc. In conclusion, MangroveDB is a valuable resource for the mangroves research community to efficiently use the massive public omics datasets.
DOI: 10.15468/dl.c62u69
title: Occurrence Download

description: A dataset containing 139754 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vespa velutina Lepeletier, 1836"
 ]
}

 The dataset includes 139754 records from 859 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003973-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g18u7g
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achatina fulica (Bowdich, 1822)",
 {
 "or" : [
 "Country is Madagascar",
 "Country is Indonesia",
 "Country is Australia",
 "Country is Japan",
 "Country is United States of America"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 65 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058669-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cb2qej
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Polythore spaeteri Burmeister & Börzsöny, 2003"
 ]
}

 The dataset includes 21 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023002-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9p9ysp
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Belize",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Culex coronator Dyar & Knab, 1906",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 53 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012789-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxb38p
title: Occurrence Download

description: A dataset containing 7006 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Occurrence status inferred from individual count",
 "Issue is References URI invalid",
 "Issue is Country derived from coordinates",
 "Issue is Footprint WKT invalid"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Lythrum salicaria L.",
 "Year 2017-2017"
 ]
}

 The dataset includes 7006 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068550-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qctrfd
title: Occurrence Download

description: A dataset containing 987 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Boa constrictor Linnaeus, 1758"
 ]
}

 The dataset includes 987 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058669-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwkbpz
title: Occurrence Download

description: A dataset containing 2025 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Spain",
 "Country is Portugal"
 ]
 },
 "Year 1960-2020",
 "TaxonKey is Pinus sylvestris L."
 ]
}

 The dataset includes 2025 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016429-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8582941
title: Reddit r/Jokes Dataset
DOI: 10.15468/dl.rsfkot
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Ecuador",
 "TaxonKey is Synallaxis brachyura Lafresnaye, 1843"
 ]
}

 The dataset includes 159 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045907-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqgps8
title: Occurrence Download

description: A dataset containing 598 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1863-2020",
 "Geometry POLYGON((71.96579 17.14607,140.94211 17.14607,140.94211 44.72479,71.96579 44.72479,71.96579 17.14607))",
 "HasCoordinate is true",
 "TaxonKey is Cymbidium goeringii (Rchb.f.) Rchb.f.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 598 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058676-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndv4ow
title: Occurrence Download

description: A dataset containing 2449 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyacinthus orientalis L."
 ]
}

 The dataset includes 2449 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010172-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wy7uzz
title: Occurrence Download

description: A dataset containing 393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Iresine diffusa f. herbstii (Hook.) Pedersen)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 393 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055536-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjmaca
title: Occurrence Download

description: A dataset containing 65528 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Cerambycidae",
 "Year 2008-2021"
 ]
}

 The dataset includes 65528 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072386-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qesxob
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "HasCoordinate is true",
 "TaxonKey is Bromus lanatus Kunth",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 53 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006170-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.knp6u3
title: Occurrence Download

description: A dataset containing 2025 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Spain",
 "Country is Portugal"
 ]
 },
 "Year 1960-2020",
 "TaxonKey is Pinus sylvestris L."
 ]
}

 The dataset includes 2025 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016431-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.js15kb
title: Occurrence Download

description: A dataset containing 4074 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anodorhynchus hyacinthinus (Latham, 1790)"
 ]
}

 The dataset includes 4074 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015368-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qh63km
title: Occurrence Download

description: A dataset containing 2022 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Distribución geográfica de algunas especies de los géneros Coryphantha (Engelm.) Lem. y Mammillaria Haw. (Cactaceae)"
 ]
}

 The dataset includes 2022 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058676-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m1tgoo
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((84.97571 27.48718,115.02429 27.48718,115.02429 39.51282,84.97571 39.51282,84.97571 27.48718))",
 "HasCoordinate is true",
 "TaxonKey is Primula cawdoriana Kingdon-Ward",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012783-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyyb6w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "CatalogNumber" : [
 "is Bird.27847588"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047553-191105090559680/datasets/export for details.
DOI: 10.15468/dl.ncbmsr
title: Occurrence Download

description: A dataset containing 674 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anemone patens L."
 ]
}

 The dataset includes 674 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058681-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wz0ngj
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melaleuca fulgens subsp. corrugata (J.M.Black ex Eardley) K.J.Cowley",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045914-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bl9zb
title: Occurrence Download

description: A dataset containing 8469 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Balaenoptera musculus (Linnaeus, 1758)"
 ]
}

 The dataset includes 8469 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047567-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lqy2mc
title: Occurrence Download

description: A dataset containing 12943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Amazilia yucatanensis (S.Cabot, 1845)"
 ]
}

 The dataset includes 12943 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006801-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwa4dy
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platycheirus latimanus (Wahlberg, 1844)"
 ]
}

 The dataset includes 62 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058683-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfdcsk
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cycas macrocarpa Griff."
 ]
}

 The dataset includes 24 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008161-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tctgmq
title: Occurrence Download

description: A dataset containing 338044 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prunus avium (L.) L."
 ]
}

 The dataset includes 338044 records from 642 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002669-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pfxsxs
title: Occurrence Download

description: A dataset containing 12360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Myioborus pictus (Swainson, 1829)"
 ]
}

 The dataset includes 12360 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058689-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5opize
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "CollectionCode" : [
 "is Z BRY"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002832-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aztfq7
title: Occurrence Download

description: A dataset containing 79594 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "Geometry POLYGON((-74.27929 4.49801,-73.92968 4.49801,-73.92968 4.62759,-74.27929 4.62759,-74.27929 4.49801))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 79594 records from 213 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020065-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17873616
title: Unit-cell parmeters from single-crystal XRD at high pressure and temperature
DOI: 10.5281/zenodo.17873615
title: Unit-cell parmeters from single-crystal XRD at high pressure and temperature
DOI: 10.15468/dl.qksu3t
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paraonis pygoenigmatica",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 166 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042835-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.