cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26326237.v1
title: Optimizing Breeding Strategies for Peking Ducks Using Genomic Selection: Genetic Parameter Evaluation and Selection Progress Analysis

description: Blood samples were drawn from the metatarsal vein using standard venipuncture and collected in vacuum tubes. Genomic DNA was extracted using the QIAampR DNA Blood Mini Kit (QIAGEN). Whole-genome resequencing was performed on the DNBSEQ-T7 platform with 150bp paired-end reads, achieving an average depth of over 2X per generation. For subsequent analysis, reads were aligned to the mallard duck reference genome ASM874695v1 [15] using BWA (v0.7.10) [16]. Following alignment, SNPs were identified using GATK HaplotypeCaller (v4.1) [17], with parameters set to default except for -stand_call_conf set to 30. Subsequently, the individual gvcf files were merged, and autosomal quality control was performed using VCFtools (v0.1.16) [18] with the parameters --remove-indels, --minQ 30, --min-alleles 2, and --max-alleles 2 to filter SNP sites for genotype imputation. After this, STITCH (v1.6.10) [19] was used for genotype imputation. Post-imputation, quality control was conducted using BCFtools (v1.8) [20] with INFO_SCORE &gt; 0.4. Then, PLINK (v 1.90) [21] was used for further quality control based on --maf 0.01, --geno 0.05, and --mind 0.05. Following this, linkage disequilibrium pruning was performed with parameters 50 5 0.2 to extract independent SNP sites. Finally, 365,860 SNPs were retained for subsequent analysis (Figure S4).
DOI: 10.17632/72z78njbzb.1
title: Combined climate change and dispersal capacity positively affect Hoplobatrachus chinensis occupancy of agricultural wetlands

description: Global warming is one of the major factors contributing to the decline and extinction of amphibian populations worldwide, and modeling can help understand the mechanisms and trends of its effects. Here, we used MaxEnt and MigClim models to predict the impact of future climate change on habitat suitability for Hoplobatrachus chinensis, a species of anuran widespread in natural and modified landscapes across eastern Indomalaya, under different climate change scenarios and dispersal patterns. We also calculated the overlap in suitable habitat between natural habitat and agricultural wetlands for the species. While the distribution of many anurans is primarily influenced by precipitation levels, our results indicate that temperature is a key environmental variable affecting the distribution of H. chinensis. Under current and future climate change scenarios, we found a positive correlation between increasing temperatures and habitat suitability for H. chinensis, with the suitable habitat for the species expanding northward by 2060, while maintaining southern habitat suitability. Comparing unlimited and limited dispersal modes, our model supported the ability of H. chinensis to track shifts in suitable habitats under climate change scenarios, given a 15 km dispersal ability per generation. Finally, we demonstrated that there is only a 25.18% overlap between current potential suitable habitats of H. chinensis and agricultural wetlands. In conclusion, our results suggest that climate change will have a positive impact on the expansion of suitable habitat for H. chinensis, even given their limited dispersal capacity. Our predictions offer important guidance for the conservation of H. chinensis, especially the integrated role of natural and agricultural wetlands, such as rice paddy fields.
DOI: 10.17632/hydsp88cg6.1
title: Full waveform inversion based on dynamic time warping and application to reveal the crustal structure of western Yunnan, southwest China

description: There are the datasets, scripts and inversion results of this study. The waveforms are listed by earthquake ID, and the ID is listed in the catalog folder.
DOI: 10.15468/dl.bxjbg3
title: Occurrence Download

description: A dataset containing 243 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "OccurrenceStatus is Present",
 "TaxonKey is Anolis luteogularis Noble & Hassler, 1935"
 ]
}

 The dataset includes 243 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029112-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/zfnx5nywjz.1
title: Severe Adverse Reaction to Measles Vaccine Due to Homozygous Mutation in IFNAR2 Gene: A Case Report and Literature Review of IFNAR2 mutation In a Ten-Month-Old Infant

description: During a detailed genetic analysis using next-generation sequencing (NGS), a homozygous Variant of Uncertain Significance (VOUS) was detected in the IFNAR2 gene, which is crucial for the body's immune defense mechanisms against viruses. The genetic testing involved fragmenting the genomic DNA and enriching specific target areas, including the human coding exome and mitochondrial genome. This targeted DNA was then sequenced on an advanced Illumina platform to ensure comprehensive and accurate detection of genetic variants. Through an in-depth bioinformatics analysis, which included alignment to the reference GRCh37/hg19 genome, the variant c.713C&gt;A was identified, resulting in a premature stop codon at p.Ser238*. Despite the precise detection, the impact of this specific mutation on the protein function and its clinical implications remains uncertain.
DOI: 10.15468/dl.vgvydw
title: Occurrence Download

description: A dataset containing 1857 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Leopardus pardalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 1857 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029113-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/df3b3n677w.1
title: S@CNT crystallographic information file

description: This is a cif file for S@CNT structure that was used to calculate XANES spectra of S using WIEN2k.
DOI: 10.15468/dl.j67ksv
title: Occurrence Download

description: A dataset containing 72924 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thymallus thymallus (Linnaeus, 1758)"
 ]
}

 The dataset includes 72924 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029114-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kakp8c
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "OccurrenceStatus is Present",
 "TaxonKey is Anolis macilentus Garrido & Hedges, 1992"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029116-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/xjcfpnzjx3.1
title: Raw data of article entitled "Targeting OGF/OGFR Signal to Mitigate Doxorubicin-induced Cardiotoxicity"

description: raw data include uncropped western blotting pictures, editable figures in ppt format, and the supplemental information comprising supplementary figures and detailed materials and methods.
DOI: 10.17632/bvhgzyxwpd.1
title: data for a manuscript

description: data for manuscript "A new proposed method for analyzing storm event discharge-concentration hysteresis: The Upper Yangtze River as an Example".
DOI: 10.15468/dl.r9z35e
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "OccurrenceStatus is Present",
 "TaxonKey is Anolis mestrei Barbour & Ramsden, 1916"
 ]
}

 The dataset includes 212 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029117-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3faffn
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eichhornia crassipes (Mart.) Solms"
 ]
}

 The dataset includes 28 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029118-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/3cdzf9b598.1
title: Flotillins affect LPS-induced TLR4 signaling by modulating the trafficking and abundance of CD14

description: Source datasets and images associated with the paper “Flotillins affect LPS-induced TLR4 signaling by modulating the trafficking and abundance of CD14” by Orest V Matveichuk, Anna Ciesielska, Aneta Hromada-Judycka, Natalia Nowak, Ichrak Ben Amor, Gabriela Traczyk, Katarzyna Kwiatkowska. Cell Mol Life Sci. 2024 Apr 23;81(1):191. doi: 10.1007/s00018-024-05221-3. Erratum in: Cell Mol Life Sci. 2024 May 30;81(1):243.doi: 10.1007/s00018-024-05288-y. PMID: 38652315; PMCID: PMC11039508.
DOI: 10.17632/jtspjmyvtr.1
title: Efficacy and safety of different dosing regimens of HB0017, a novel humanized anti-interleukin-17A monoclonal antibody, in moderate-to-severe plaque psoriasis: a multicenter, randomized, double-blind, placebo-controlled, phase II study

description: This study demonstrated the promising efficacy of HB0017, and offers a new alternative for moderate-to-severe psoriasis, which might potentially improve patient compliance and treatment outcomes with less frequent dosing.
DOI: 10.17632/9wxcd3t3tt.4
title: Rhinoceros Serum MicroRNAs

description: MiRNA sequences and counts in serum of four species of rhinoceros: black (Diceros bicornis), greater one-horned (Rhinoceros unicornis), Sumatran (Dicerorhinus sumatrensis) and white (Ceratotherium simum). Serum samples from black and Sumatran rhinos were from individuals categorized as healthy, unhealthy (afflicted with disease other than iron overload), and afflicted with iron overload disorder. Serum samples from greater one-horned and white rhinos were from healthy individuals.

RT-qPCR Raw Cq values for serum miRNAs are also included for additional serum samples collected from black and Sumatran rhinos.

This excel file contains three tabs:  sample info, sequencing data, and PCR data. A few of the samples overlap between the datasets - refer to assigned sample number and animal ID to identify overlaps.

Version 2: PCR data was added to file
Version 3: Sequencing files and PCR files were combined into one excel file for ease of use and additional sample demographic info was added.
Version 4: Sample info was combined into one tab.
DOI: 10.17632/9wxcd3t3tt.1
title: Rhinoceros Serum MicroRNAs
DOI: 10.17632/9wxcd3t3tt.2
title: Rhinoceros Serum MicroRNAs

description: MiRNA sequences and counts in serum of four species of rhinoceros: black (Diceros bicornis), greater one-horned (Rhinoceros unicornis), Sumatran (Dicerorhinus sumatrensis) and white (Ceratotherium simum). Serum samples from black and Sumatran rhinos were from individuals categorized as healthy, unhealthy (afflicted with disease other than iron overload), and  afflicted with iron overload disorder. Serum samples from greater one-horned and white rhinos were from healthy individuals.

RT-qPCR Raw Cq values for serum miRNAs are also included for additional samples collected from black and Sumatran rhinos.
DOI: 10.17632/9wxcd3t3tt.3
title: Rhinoceros Serum MicroRNAs

description: MiRNA sequences and counts in serum of four species of rhinoceros: black (Diceros bicornis), greater one-horned (Rhinoceros unicornis), Sumatran (Dicerorhinus sumatrensis) and white (Ceratotherium simum). Serum samples from black and Sumatran rhinos were from individuals categorized as healthy, unhealthy (afflicted with disease other than iron overload), and  afflicted with iron overload disorder. Serum samples from greater one-horned and white rhinos were from healthy individuals.

RT-qPCR Raw Cq values for serum miRNAs are also included for additional samples collected from black and Sumatran rhinos.

This excel file contains four tabs: miRNA sequencing sample info and data and miRNA sample info and PCR data. A few of the samples overlap between the datasets - refer to assigned sample number and animal ID to identify overlaps.

Version 2: PCR data was added to file
Version 3: Sequencing files and PCR files were combined into one excel file for ease of use and additional sample demographic info was added.
DOI: 10.17632/9wxcd3t3tt.5
title: Rhinoceros Serum MicroRNAs

description: MiRNA sequences and counts in serum of four species of rhinoceros: black (Diceros bicornis), greater one-horned (Rhinoceros unicornis), Sumatran (Dicerorhinus sumatrensis) and white (Ceratotherium simum). Serum samples from black and Sumatran rhinos were from individuals categorized as healthy, unhealthy (afflicted with disease other than iron overload), and afflicted with iron overload disorder. Serum samples from greater one-horned and white rhinos were from healthy individuals.

RT-qPCR Raw Cq values for serum miRNAs are also included for additional serum samples collected from black and Sumatran rhinos.

This excel file contains three tabs: sample info, sequencing data, and PCR data. A few of the samples overlap between the datasets - refer to assigned sample number and animal ID to identify overlaps.

Version 2: PCR data was added to file
Version 3: Sequencing files and PCR files were combined into one excel file for ease of use and additional sample demographic info was added.
Version 4: Sample info was combined into one tab.
DOI: 10.15468/dl.qsqd7v
title: Occurrence Download

description: A dataset containing 149657 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.5_1",
 "TaxonKey is Brassicaceae"
 ]
}

 The dataset includes 149657 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029109-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/psnh2jjbxs.1
title: An experimental study of the solubility and speciation of niobium in HF-bearing aqueous solutions at temperatures up to 350 °C

description: Contains data used in figures in main text and supplementary material of manuscript "An experimental study of the solubility and speciation of niobium in HF-bearing aqueous solutions at temperatures up to 350 °C" to be submitted in Geochimica et Cosmochimica Acta.
DOI: 10.15468/dl.mmxjyk
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "OccurrenceStatus is Present",
 "TaxonKey is Anolis noblei Barbour & Shreve, 1935"
 ]
}

 The dataset includes 45 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029121-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12764108
title: Imaging Mass Cytometry (IMC) data for TNBC Samples

description: Imaging mass cytometry (IMC) data was collected on multiple regions of interest (ROIs) from a racially balanced and clinically matched cohort of 57 surgically resected tissues, primarily TNBC, as identified by H&E images. This cohort consisted of 26 self-reported Black American (BA) women and 31 self-reported White American (WA) women. ROIs were selected from both the tumor center and tumor periphery, and were categorized as either immune-rich or immune-poor.
DOI: 10.17632/c5kv9k6htj.1
title: Radioactivity in polymetallic nodules from the Clarion-Clipperton Zone

description: In this study we present, for the first time, specific activities of all long-lived alpha, beta and gamma emitters from the natural decay chains of Uranium-238, Uranium-235 and Thorium-232, in bulk and surface material of the same nodules obtained from 10 locations within the Clarion-Clipperton Zone. The results show elevated specific activities for the nuclides Th-230, Ra 226, Pb-210, Po-210, as well as Pa-231 and Ac-227 in accordance with prior reported activities. However, in contrast to assumptions made in previous studies, our analyses show that Pa-231 is not in equilibrium with its daughter nuclide Ac-227.
DOI: 10.15468/dl.pkd7yy
title: Occurrence Download

description: A dataset containing 319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "OccurrenceStatus is Present",
 "TaxonKey is Anolis ophiolepis Cope, 1861"
 ]
}

 The dataset includes 319 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029123-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qdjxde
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bokermannohyla claresignata (Lutz & Lutz, 1939)"
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029124-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/fscsfpk7kp.1
title: Impact of augmented reality

description: The data we have analyzed pertains to a study investigating the impact of augmented reality (AR) on the acquisition of minimally invasive surgical skills among podiatry students. The study involved 80 students and compared the effectiveness of AR versus traditional educational methods (such as PowerPoint and video tutorials) in teaching surgical techniques for hallux abductus valgus (HAV) and bunionette surgeries. The data collected included students' perceptions evaluated through a validated questionnaire (SAEMAS), measuring aspects such as motivation, content retention, visual comprehension, and active learning.
DOI: 10.15468/dl.hx9wwe
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "OccurrenceStatus is Present",
 "TaxonKey is Anolis oporinus Garrido & Hedges, 2001"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029125-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p13xdst8
title: Lunar Missions Science Training Program Apollo 16 and 17- 19711001

description: This document updates the training requirements for the Apollo 16 and 17 SIM Bay.
DOI: 10.17632/dz6hpkrzm3.1
title: Code for "Proteome adaptation in the last phase of growth contributes to lower the death rate of Escherichia coli during starvation"

description: Code used for the simulations employed in the manuscript "Proteome adaptation in the last phase of growth contributes to lower the death rate of Escherichia coli during starvation"

In this folder you can find the code that simulates the allocation strategy and proteome dynamics during the shift to starvation, as described in the manuscript. The model is based upon the FCR model, published by Erikson, Schink et al in 2017.

In this program, you can simulate the dynamics of the shift experiment by fitting the time course of the growth rate with a sigmoid (as in the manuscript) and inserting the values of the parameters of the fit in the program. You can simulate the three different dynamics that we propose: the global regulation one, the targeted towards the survival sector, and the targeted towards the harmful.

Abstract:
One form of non-genetic memory in microorganisms is in the composition of the cellular proteome, which changes only slowly, as without significant protein degradation the dilution of the old proteome by cell growth and division sets the lifetime for this proteome memory. Cells can benefit from their non-genetic memory when previously encountered environmental conditions recur, but the proteome memory has also been shown to limit the speed of adaptation processes. This limitation could be particularly severe when the environment shifts to carbon starvation, depriving cells of both energy and material needed for growth. 
Here, we study the adaptation that occurs during gradual transitions from exponential growth to carbon starvation. We probe such transitions in cultures with different initial growth conditions and measure the resulting rates of cell death after the transition. We consistently observe lower death rates for cells that could adapt their proteome before entering carbon starvation compared to cells that could not. The quantitative data is consistent with a theoretical model built on the assumption that before starvation, cells up-regulate a specific sector of the proteome, the effect of which is to decrease the death rate in energy-limiting conditions. 
Our results emphasize that a comprehensive understanding of bacterial fitness requires quantitative characterization of bacterial physiology in all phases of their life cycle, including growth, stationary phase, and death, as well as the transitions between them.