cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5fzqfj
title: Occurrence Download

description: A dataset containing 323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Flammulina fennae Bas)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 323 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240945-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.up9ghh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brocadiae",
 "HasCoordinate is true",
 "Country is one of (United Kingdom of Great Britain and Northern Ireland)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240970-210914110416597/datasets/export for details.
DOI: 10.15468/dl.4s5kcf
title: Occurrence Download

description: A dataset containing 720 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solidago confinis A.Gray"
 ]
}

 The dataset includes 720 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137190-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwszjn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brocadiae",
 "HasCoordinate is true",
 "Country is one of (United Kingdom of Great Britain and Northern Ireland)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240972-210914110416597/datasets/export for details.
DOI: 10.15468/dl.7mt7s8
title: Occurrence Download

description: A dataset containing 24295 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Fraxinus ornus L."
 ]
}

 The dataset includes 24295 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002476-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26089332
title: HiGTS_2019s3

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2019s3 contains the data from July 1, 2019 to September 30, 2019.
DOI: 10.15468/dl.fsrwnd
title: Occurrence Download

description: A dataset containing 2755 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Protium unifoliolatum Engl., Tetragastris unifoliolata (Engl.) Cuatrec., Protium unifoliolatum var. subserratum Engl., Protium unifoliolatum var. macrophyllum Huber, Protium unifoliolatum var. puberulum Hoehne, Protium unifoliolatum var. inconforme Swart)"
 ]
}

 The dataset includes 2755 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005397-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j3m9x5
title: Occurrence Download

description: A dataset containing 2949 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence, Specimen)",
 "GadmGid is one of (USA.33_1, USA.39_1, USA.20_1, USA.23_1, USA.31_1, USA.46_1, USA.22_1, USA.40_1, USA.7_1, USA.8_1, USA.36_1, USA.15_1, USA.14_1, USA.50_1, USA.24_1, USA.16_1, USA.26_1, USA.21_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Myotis lucifugus (Le Conte, 1831)",
 "Year 1000-2024"
 ]
}

 The dataset includes 2949 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005398-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4crzms
title: Occurrence Download

description: A dataset containing 2124 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Zanthoxylum riedelianum Engl., Fagara cinerea (Engl.) Engl., Fagara duckei Albuq., Fagara latespinosa (Engl.) Engl., Fagara prancei Albuq., Fagara riedeliana (Engl.) Engl., Fagara williamii Albuq., Zanthoxylum cinereum Engl., Zanthoxylum cuiabense Engl., Zanthoxylum duckei (Albuq.) D.M.Porter, Zanthoxylum latespinosum Engl., Zanthoxylum prancei (Albuq.) P.G.Waterman, Zanthoxylum williamii (Albuq.) P.G.Waterman)"
 ]
}

 The dataset includes 2124 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005399-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.99k2fb
title: Occurrence Download

description: A dataset containing 640 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Protium pilosissimum Engl.)"
 ]
}

 The dataset includes 640 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005401-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26042794.v8
title: HBA

description: data from paper: Single-cell DNA methylation and 3D genome architecture in the human brain; PMID: 37824674
DOI: 10.6084/m9.figshare.26042794.v9
title: HBA

description: data from paper: Single-cell DNA methylation and 3D genome architecture in the human brain; PMID: 37824674
DOI: 10.15468/dl.ytt6tr
title: Occurrence Download

description: A dataset containing 2037742 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "StateProvince is one of (cundinamarca)"
 ]
}

 The dataset includes 2037742 records from 757 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005400-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phqgch
title: Occurrence Download

description: A dataset containing 14733 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Zanthoxylum rhoifolium Lam., Fagara acutifolia (Engl.) Engl., Fagara astrigera R.S.Cowan, Fagara obscura (Engl.) Engl., Fagara regnelliana (Engl.) Chodat & Hassl., Fagara rhoifolia (Lam.) Engl., Fagara rhoifolia var. intermedia R.S.Cowan & L.B.Sm., Fagara rhoifolia var. peltophora (Turcz.) Chodat & Hassl., Fagara rhoifolia var. petiolulata (Engl.) Engl., Fagara rhoifolia var. surparanaensis Najera, Galdeano & Escal., Fagara ruiziana (Engl.) Engl., Pohlana langsdorffii Nees & Mart., Zanthoxylum acutifolium Engl., Zanthoxylum acutifolium var. petiolulatum Engl., Zanthoxylum astrigerum (R.S.Cowan) P.G.Waterman, Zanthoxylum langsdorfii (Nees & Mart.) A.St.-Hil., Zanthoxylum obscurum Engl., Zanthoxylum obscurum var. ruizianum Engl., Zanthoxylum peltophorum Turcz., Zanthoxylum perrottetii DC., Zanthoxylum regnellianum Engl., Zanthoxylum rhoifolium var. formosanum (Lillo) P.G.Waterman, Zanthoxylum rhoifolium var. peltophorum (Turcz.) Engl., Zanthoxylum rhoifolium var. petiolulatum Engl., Zanthoxylum rhoifolium var. pubescens (A.St.-Hil. & Tul.) Engl., Zanthoxylum rhoifolium var. sessilifolium Engl., Zanthoxylum rhoifolium var. surparanaense (Najera, Galdeano & Escal.) P.G.Waterman, Zanthoxylum ruizianum Klotzsch ex Engl., Zanthoxylum sorbifolium A.St.-Hil.)"
 ]
}

 The dataset includes 14733 records from 361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005402-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12594322
title: Supplementary Simulation Data for "A contact-based analysis of local energetic frustration dynamics identifies key residues enabling RfaH fold-switch"

description: Additional simulation data for "A contact-based analysis of local energetic frustration dynamics identifies key residues enabling RfaH fold-switch"

Content:

'clusters_foldswitch': Contains representative structures in PDB format of the refolding landscape of RfaH using all-atom structure-based models. The QA and QB values indicated in each filename correspond to the fraction of native contacts contain in the representative structure in comparison to the total number of contacts in the structure of the autoinhibited ⍺-folded (A) and active β-folded (B) states of the C-terminal domain of RfaH.

'input_one_fs': Contains a trajectory of RfaH refolding from the ⍺-folded to the β-folded state, with each frame contained into a separate PDB file, totalling 400 PDB files. These files can be used with the frustration-based windowing method  scripts and Colab notebook made available at https://github.com/pb3lab/RfaH-frustration

'input_many_fs': Contains several trajectory of RfaH reversible refolding between the ⍺-folded and β-folded states, with each frame contained into a separate PDB file, totalling 11,999 PDB files. These files can be used with the frustration-based windowing method  scripts and Colab notebook made available at https://github.com/pb3lab/RfaH-frustration

'output_one_fs': Contains output results from the analysis of local energetic frustration dynamics of the 400 frames contained in 'input_one_fs' using the windowing method available in the Colab notebook at https://github.com/pb3lab/RfaH-frustration.

'output_many_fs': Contains output results from the analysis of local energetic frustration dynamics of the 11,999 frames contained in 'input_many_fs' using the windowing method available in the Python script at https://github.com/pb3lab/RfaH-frustration.
DOI: 10.5281/zenodo.12594323
title: Supplementary Simulation Data for "A contact-based analysis of local energetic frustration dynamics identifies key residues enabling RfaH fold-switch"

description: Additional simulation data for "A contact-based analysis of local energetic frustration dynamics identifies key residues enabling RfaH fold-switch"

Content:

'clusters_foldswitch': Contains representative structures in PDB format of the refolding landscape of RfaH using all-atom structure-based models. The QA and QB values indicated in each filename correspond to the fraction of native contacts contain in the representative structure in comparison to the total number of contacts in the structure of the autoinhibited ⍺-folded (A) and active β-folded (B) states of the C-terminal domain of RfaH.

'input_one_fs': Contains a trajectory of RfaH refolding from the ⍺-folded to the β-folded state, with each frame contained into a separate PDB file, totalling 400 PDB files. These files can be used with the frustration-based windowing method  scripts and Colab notebook made available at https://github.com/pb3lab/RfaH-frustration

'input_many_fs': Contains several trajectory of RfaH reversible refolding between the ⍺-folded and β-folded states, with each frame contained into a separate PDB file, totalling 11,999 PDB files. These files can be used with the frustration-based windowing method  scripts and Colab notebook made available at https://github.com/pb3lab/RfaH-frustration

'output_one_fs': Contains output results from the analysis of local energetic frustration dynamics of the 400 frames contained in 'input_one_fs' using the windowing method available in the Colab notebook at https://github.com/pb3lab/RfaH-frustration.

'output_many_fs': Contains output results from the analysis of local energetic frustration dynamics of the 11,999 frames contained in 'input_many_fs' using the windowing method available in the Python script at https://github.com/pb3lab/RfaH-frustration.
DOI: 10.15468/2axacp
title: The University and Jepson Herbaria -- Algae

description: The University Herbarium at UC Berkeley houses a world-renowned collection of marine algae emphasizing the seaweeds of California and the Pacific Coast. The collection consists of over 169,000 imaged and databased specimens.
DOI: 10.6084/m9.figshare.26042794.v10
title: HBA

description: data from paper: Single-cell DNA methylation and 3D genome architecture in the human brain; PMID: 37824674
DOI: 10.15468/dl.3hj7ej
title: Occurrence Download

description: A dataset containing 2747 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Protium spruceanum (Benth.) Engl., Protium almecega Marchand, Protium venosum Engl.)"
 ]
}

 The dataset includes 2747 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005403-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfvut9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Stellatocharaceae)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048375-240314170635999/datasets/export for details.
DOI: 10.15468/dl.mxbhbh
title: Occurrence Download

description: A dataset containing 613 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salix retusa With.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 613 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002386-150410134957023/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnwryt
title: Occurrence Download

description: A dataset containing 2234 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ferrissia californica (Rowell, 1863)"
 ]
}

 The dataset includes 2234 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021948-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ym7ach
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panthera onca (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2010"
 ]
}

 The dataset includes 53 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002386-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uz5d7h
title: Occurrence Download

description: A dataset containing 12142287 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Pl@ntNet automatically identified occurrences"
 ]
}

 The dataset includes 12142287 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005599-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xh4e7u
title: Occurrence Download

description: A dataset containing 6239 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes japonicus (Theobald, 1901)"
 ]
}

 The dataset includes 6239 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058726-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqhsz2
title: Occurrence Download

description: A dataset containing 20098 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Actitis macularius (Linnaeus, 1766)"
 ]
}

 The dataset includes 20098 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004699-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.44ntpy
title: Occurrence Download

description: A dataset containing 7261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cornus drummondii C.A.Mey."
 ]
}

 The dataset includes 7261 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058723-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5d4arz
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Moschus moschiferus Linnaeus, 1758"
 ]
}

 The dataset includes 38 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045893-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bxgin
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanaceae",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-110.79 31.52,-110.79 31.55,-110.73 31.55,-110.73 31.52,-110.79 31.52))"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002386-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jn2vg8
title: Occurrence Download

description: A dataset containing 20397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tridax procumbens L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20397 records from 422 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045250-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3tasp6
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aenictopecheidae"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0333514-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25grcz
title: Occurrence Download

description: A dataset containing 251 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Adenocystis J.D.Hooker & W.H.Harvey, 1845",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 251 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002386-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3e25cc
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tragus mongolorum Ohwi",
 "HasCoordinate is true"
 ]
}

 The dataset includes 82 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045230-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94vdue
title: Occurrence Download

description: A dataset containing 2666829 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "Country is Mexico",
 "Year 1950-2018",
 "TaxonKey is Passeriformes"
 ]
}

 The dataset includes 2666829 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000237-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8x4dcr
title: Occurrence Download

description: A dataset containing 143489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triticum aestivum L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 143489 records from 780 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045334-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xue23
title: Occurrence Download

description: A dataset containing 301014 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anthoxanthum odoratum L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 301014 records from 423 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027283-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.