cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7546187.v1
title: Additional file 2: of Pseudomonas fluorescens increases mycorrhization and modulates expression of antifungal defense response genes in roots of aspen seedlings

description: RPKM scores for all samples. This file includes results from Bowstap analysis of transcriptomic data for aspen gene expression and ANOVA results. Data types are ‘Unique RPKM’ which disregards sequence fragments that align to more than one gene, ‘Ave RPKM’ which is the results including bootstrapped analysis including multiply-aligning sequences, ‘SD RPKM’ which is the standard deviation of bootstrapped alignment RPKM values, ‘Log2Norm RPKM’ which is the normalized gene expression values, ‘pVal’ which is the significance of gene expression calculated from Bowstrap analysis, and ANOVA-pVal which is the significance of analysis of variance by presence of Laccaria (LBI), presence of SBW25, and the interaction condition. (CSV 22927 kb)
DOI: 10.6084/m9.figshare.7546181.v1
title: Additional file 1: of Pseudomonas fluorescens increases mycorrhization and modulates expression of antifungal defense response genes in roots of aspen seedlings

description: Table of RNAseq alignments. Table presents total number of reads per sequencing reaction, number of reads that align to each community member, and the percent of total aligned reads that align to each community member. (XLSX 9 kb)
DOI: 10.7284/111155
title: Multiplexed data collected during research cruise HRS1311 using a Delaware SMS instrument system onboard the platform RV Hugh R. Sharp
DOI: 10.7284/111159
title: Multiplexed data collected during research cruise HRS1312 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111161
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1312 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111162
title: Multiplexed data collected during research cruise HRS1313 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7546154
title: Additional file 1: of Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs

description: Table S1. Expression quantitative trait loci (eQTL) mapped for longissimus dorsi muscle transcripts from the MSUPRP (n = 168). Table S2. Phenotypic QTL identified in the F2 MSUPRP. Table S3. Results of conditional analysis for expression QTL co-localized with phenotypic QTL. Table S4. Pearson correlations of genes associated with the H3GA0052416 marker on SSC15 and protein percent. Table S5. Conditional analysis: PRKAG3 SNP effect on eQTL gene’s expression. Table S6. Comparison of RT-qPCR and RNA-seq CHRNA9 gene expression association with SNP DIAS0000678. Table S7. Summary statistics for phenotypic traits for the MSUPRP and the subsample used in this study. (XLSX 200 kb)
DOI: 10.6084/m9.figshare.7546154.v1
title: Additional file 1: of Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs

description: Table S1. Expression quantitative trait loci (eQTL) mapped for longissimus dorsi muscle transcripts from the MSUPRP (n = 168). Table S2. Phenotypic QTL identified in the F2 MSUPRP. Table S3. Results of conditional analysis for expression QTL co-localized with phenotypic QTL. Table S4. Pearson correlations of genes associated with the H3GA0052416 marker on SSC15 and protein percent. Table S5. Conditional analysis: PRKAG3 SNP effect on eQTL gene’s expression. Table S6. Comparison of RT-qPCR and RNA-seq CHRNA9 gene expression association with SNP DIAS0000678. Table S7. Summary statistics for phenotypic traits for the MSUPRP and the subsample used in this study. (XLSX 200 kb)
DOI: 10.7284/111164
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1313 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7546139
title: Additional file 7: of The peacefulness gene promotes aggression in Drosophila

description: Movie S4A. and S4B. Video clips showing aggressive behaviours of wild-type male flies (4A) and male flies overexpressing pfs (4B), related to Fig. 6. Male flies of the same genotype were paired together. pfs overexpression greatly increased fly aggressiveness. (ZIP 8304 kb)
DOI: 10.7284/111165
title: Multiplexed data collected during research cruise HRS1314 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7546139.v1
title: Additional file 7: of The peacefulness gene promotes aggression in Drosophila

description: Movie S4A. and S4B. Video clips showing aggressive behaviours of wild-type male flies (4A) and male flies overexpressing pfs (4B), related to Fig. 6. Male flies of the same genotype were paired together. pfs overexpression greatly increased fly aggressiveness. (ZIP 8304 kb)
DOI: 10.7284/111167
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1314 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7546112
title: Additional file 1: of The peacefulness gene promotes aggression in Drosophila

description: Movie S1A. and S1B. Video clips showing aggressive behaviours of wild-type (S1A) and d03517 mutant (S1B) male flies, related to Fig. 1a and b. Male flies of the same genotype were paired together. (ZIP 10240 kb)
DOI: 10.7284/115766
title: Multiplexed data collected during research cruise HRS1401 using a Delaware SMS instrument system onboard the platform RV Hugh R. Sharp
DOI: 10.6084/m9.figshare.7546112.v1
title: Additional file 1: of The peacefulness gene promotes aggression in Drosophila

description: Movie S1A. and S1B. Video clips showing aggressive behaviours of wild-type (S1A) and d03517 mutant (S1B) male flies, related to Fig. 1a and b. Male flies of the same genotype were paired together. (ZIP 10240 kb)
DOI: 10.7284/115769
title: Multiplexed data collected during research cruise HRS1402 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115770
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1402 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7546085
title: Additional file 5: of Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

description: Summary of features characteristic of individual groups of LTR-retrotransposons. (XLS 17 kb)
DOI: 10.6084/m9.figshare.7546085.v1
title: Additional file 5: of Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

description: Summary of features characteristic of individual groups of LTR-retrotransposons. (XLS 17 kb)
DOI: 10.7284/115771
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1402 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115772
title: Multiplexed data collected during research cruise HRS1403 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7546070
title: Additional file 3: of Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

description: Sequences of all polyprotein domains in FASTA format. Individual types of domains are distinguished by a prefix which is followed by a name of DNA sequence of the complete element. For example Ty1-RT__REXdb_ID3879 is a protein sequence of RT domain from Ty1/copia element whose entire DNA sequence name is REXdb_ID3879. Information about sources of DNA sequences and classification of complete elements is provided in the Additional file 1. (FASTA 13368 kb)
DOI: 10.6084/m9.figshare.7546070.v1
title: Additional file 3: of Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

description: Sequences of all polyprotein domains in FASTA format. Individual types of domains are distinguished by a prefix which is followed by a name of DNA sequence of the complete element. For example Ty1-RT__REXdb_ID3879 is a protein sequence of RT domain from Ty1/copia element whose entire DNA sequence name is REXdb_ID3879. Information about sources of DNA sequences and classification of complete elements is provided in the Additional file 1. (FASTA 13368 kb)
DOI: 10.7284/115773
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1403 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115774
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1403 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7546055
title: Additional file 1: of Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

description: Information about LTR-retrotransposon sequences included in the study. (XLS 9823 kb)
DOI: 10.7284/115775
title: Multiplexed data collected during research cruise HRS1404 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7546055.v1
title: Additional file 1: of Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

description: Information about LTR-retrotransposon sequences included in the study. (XLS 9823 kb)
DOI: 10.6084/m9.figshare.7546034
title: Additional file 4: of Validating laboratory defined chronic kidney disease in the electronic health record for patients in primary care

description: Appendix Table S4. Patients without Documented Nephrology Consultations (nÂ =â 1377). Logistic regression models for Patients who had a nephrology consultation in their electronic health record. (XLSX 14 kb)
DOI: 10.7284/115776
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1404 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7546034.v1
title: Additional file 4: of Validating laboratory defined chronic kidney disease in the electronic health record for patients in primary care

description: Appendix Table S4. Patients without Documented Nephrology Consultations (nÂ =â 1377). Logistic regression models for Patients who had a nephrology consultation in their electronic health record. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7546028
title: Additional file 3: of Validating laboratory defined chronic kidney disease in the electronic health record for patients in primary care

description: Appendix Table S3. Patients with Documented Nephrology Consultations (nÂ =â 389). Logistic regression models for Patients who had a nephrology consultation in their electronic health record. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7546028.v1
title: Additional file 3: of Validating laboratory defined chronic kidney disease in the electronic health record for patients in primary care

description: Appendix Table S3. Patients with Documented Nephrology Consultations (nÂ =â 389). Logistic regression models for Patients who had a nephrology consultation in their electronic health record. (XLSX 14 kb)
DOI: 10.7284/115778
title: Multiplexed data collected during research cruise HRS1405 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7546022
title: Additional file 2: of Validating laboratory defined chronic kidney disease in the electronic health record for patients in primary care

description: Appendix Table S2. Characteristics of primary care patients with CKD based on eGFR (nÂ =â 1767). Patient characteristics stratified by their eGFR values. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7546022.v1
title: Additional file 2: of Validating laboratory defined chronic kidney disease in the electronic health record for patients in primary care

description: Appendix Table S2. Characteristics of primary care patients with CKD based on eGFR (nÂ =â 1767). Patient characteristics stratified by their eGFR values. (XLSX 16 kb)
DOI: 10.7284/115779
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1405 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7546013
title: Additional file 1: of Validating laboratory defined chronic kidney disease in the electronic health record for patients in primary care

description: Appendix Table S1. Diagnosis Codes for Selected Comorbid Conditions. ICD9 codes used to identify problem list diagnoses of patients. (XLSX 9 kb)
DOI: 10.7284/115780
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1405 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7546013.v1
title: Additional file 1: of Validating laboratory defined chronic kidney disease in the electronic health record for patients in primary care

description: Appendix Table S1. Diagnosis Codes for Selected Comorbid Conditions. ICD9 codes used to identify problem list diagnoses of patients. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7545998
title: Additional file 7: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: TOMTOM output for hyper-variable cytosines from populational neutrophil data. Motifs detected from sequences flanking hyper-variable cytosines in populational neutrophil data queried against a database of known vertebrate transcription factor sequence motifs. Significant matches are indicated beside each query. Generated using the TOMTOM software tool. (HTML 110 kb)
DOI: 10.7284/115784
title: Multiplexed data collected during research cruise HRS1407 using a Delaware SMS instrument system onboard the platform RV Hugh R. Sharp
DOI: 10.6084/m9.figshare.7545998.v1
title: Additional file 7: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: TOMTOM output for hyper-variable cytosines from populational neutrophil data. Motifs detected from sequences flanking hyper-variable cytosines in populational neutrophil data queried against a database of known vertebrate transcription factor sequence motifs. Significant matches are indicated beside each query. Generated using the TOMTOM software tool. (HTML 110 kb)
DOI: 10.6084/m9.figshare.7545992
title: Additional file 6: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: MEME output for hyper-variable cytosines from populational neutrophil data. Motif enrichment logos and characteristics for the sequences within 100 bp of hyper-variable cytosines from populational neutrophil data. Generated using the MEME software tool. (HTML 949 kb)
DOI: 10.6084/m9.figshare.7545986
title: Additional file 5: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: TOMTOM output for oscillating cytosines in neutrophil. Motifs detected from sequences flanking osc-modCs queried against a database of known vertebrate transcription factor sequence motifs. Significant matches are indicated beside each query. Generated using the TOMTOM software tool. (HTML 285 kb)
DOI: 10.6084/m9.figshare.7545992.v1
title: Additional file 6: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: MEME output for hyper-variable cytosines from populational neutrophil data. Motif enrichment logos and characteristics for the sequences within 100 bp of hyper-variable cytosines from populational neutrophil data. Generated using the MEME software tool. (HTML 949 kb)
DOI: 10.7284/115787
title: Multiplexed data collected during research cruise HRS1408 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545986.v1
title: Additional file 5: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: TOMTOM output for oscillating cytosines in neutrophil. Motifs detected from sequences flanking osc-modCs queried against a database of known vertebrate transcription factor sequence motifs. Significant matches are indicated beside each query. Generated using the TOMTOM software tool. (HTML 285 kb)
DOI: 10.6084/m9.figshare.7545977
title: Additional file 4: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: MEME output for oscillating cytosines in neutrophil. Motif enrichment logos and characteristics for the sequences within 100 bp of osc-modCs. Generated using the MEME software tool. (HTML 2357 kb)
DOI: 10.7284/115788
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1408 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545971
title: Additional file 3: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: Proportion of variance explained by oscillations at various EVCs thresholds. Number of total EVCs, percent of oscillating EVCs, and summary of oscillating principal component scores at different EVC selection thresholds. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7545977.v1
title: Additional file 4: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: MEME output for oscillating cytosines in neutrophil. Motif enrichment logos and characteristics for the sequences within 100 bp of osc-modCs. Generated using the MEME software tool. (HTML 2357 kb)
DOI: 10.6084/m9.figshare.7545971.v1
title: Additional file 3: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: Proportion of variance explained by oscillations at various EVCs thresholds. Number of total EVCs, percent of oscillating EVCs, and summary of oscillating principal component scores at different EVC selection thresholds. (XLSX 9 kb)
DOI: 10.7284/115790
title: Multiplexed data collected during research cruise HRS1409 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545959
title: Additional file 2: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: Oscillation parameters for all interrogated CpG positions. EVC p value, cosinor p value, mesor, acrophase, amplitude, and genomic information for all interrogated cytosine positions. (CSV 40045 kb)
DOI: 10.7284/115791
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1409 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545959.v1
title: Additional file 2: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: Oscillation parameters for all interrogated CpG positions. EVC p value, cosinor p value, mesor, acrophase, amplitude, and genomic information for all interrogated cytosine positions. (CSV 40045 kb)
DOI: 10.6084/m9.figshare.7545950
title: Additional file 1: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: Oscillation parameters of white blood cell fractions. Counts, fractions, and oscillation p values of 5 WBC cell types averaged across 4 individuals. (XLSX 9 kb)
DOI: 10.7284/115793
title: Multiplexed data collected during research cruise HRS1411 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7545941
title: Additional file 1: of First report of Culex flavivirus infection from Culex coronator (Diptera: Culicidae), Colombia

description: Culex flavivirus aligment Bayesian inference phylogeny of representatives CxFv sequences belonging to different geographic regions strains obtained from the GenBank database. (FAS 29 kb)
DOI: 10.6084/m9.figshare.7545950.v1
title: Additional file 1: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

description: Oscillation parameters of white blood cell fractions. Counts, fractions, and oscillation p values of 5 WBC cell types averaged across 4 individuals. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7545941.v1
title: Additional file 1: of First report of Culex flavivirus infection from Culex coronator (Diptera: Culicidae), Colombia

description: Culex flavivirus aligment Bayesian inference phylogeny of representatives CxFv sequences belonging to different geographic regions strains obtained from the GenBank database. (FAS 29 kb)
DOI: 10.7284/115794
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1411 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115796
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1411 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115797
title: Multiplexed data collected during research cruise HRS1413 using a UDel SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition