cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.ck0mp/2
title: PDM code files and readme

description: Included in this package are all code required to run the PDM and a readme file to explain how to implement the PDM for use.
DOI: 10.5061/dryad.cp8t9/1
title: All Data And Scripts

description: This archive contains all the scripts and data used in the analyses for the paper.
DOI: 10.5061/dryad.dg261/1
title: guppy

description: main data file containing ornamental and fitness traits for all males from all trials from the six introduced Australian populations of guppies
DOI: 10.5061/dryad.dg261/2
title: trait means

description: file containing the ornamental trait means
DOI: 10.5061/dryad.dg261/3
title: selection gradients
DOI: 10.5061/dryad.dg261/4
title: geographic coordinates
DOI: 10.5061/dryad.dg261/5
title: genetic data
DOI: 10.5061/dryad.fc3sh/1
title: Orozco-terWengel_et_al_MSA

description: microsatellite matrix of Dyscophus antongili and D guineiti in MSA format with an additional column reflecting sample name. Missing data is represented by under scores "_".
DOI: 10.5061/dryad.g665r/1
title: Pollinator visitation
DOI: 10.5061/dryad.g665r/2
title: Mantis Flower Reflectance
DOI: 10.5061/dryad.g76t8/1
title: PdogContagiousData

description: Microsoft Excel xlsx file with data from the final data set of 27 black-tailed prairie dog jump yip bouts summarized with each bout's data in rows, the first column (Rob's bout) giving a unique site and bout identifier, the second (Latency) the latency in seconds to initial response, the third the duration of the bout (Duration) in seconds from the initial response to the end of the final jump yip within the bout, the third (Responses) the number of jump-yip responses in the bout, the fifth (ppn vigilant) is the proportion of time the bout instigator devoted to vigilance in the one minute subsequent to the instigator's call, and the sixth (total forg), the proportion of time in the minute subsequent to the bout instigator's call that the bout instigator devoted to active foraging.
DOI: 10.5061/dryad.hk860/1
title: Assembled 128 Campylobacter whole genome sequences

description: 128 Campylobacter whole genomes sequenced using a Illumina HiSeq 2000 and assembled using Velvet. Filenames refer to IDs in Table S1 in the associated publication.
DOI: 10.5061/dryad.hk860/2
title: Complete set of available STs for C. jejuni (sequences)

description: Sequences of every alleles for MLST profiles of 3,834 STs present in the pubMLST Campylobacter database as of the 26th of May 2011 and used in the associated publication.
DOI: 10.5061/dryad.j8kp5/2
title: Supplementary file 2
DOI: 10.5061/dryad.j8kp5/3
title: Supplementary file 3
DOI: 10.5061/dryad.j8kp5/4
title: Supplementary file 4
DOI: 10.5061/dryad.j8kp5/5
title: Supplementary file 5
DOI: 10.5061/dryad.km25k/1
title: Data_set
DOI: 10.5061/dryad.qj864/1
title: Melo-Ferreira_et_al_Genotypes

description: Genotypes of 6 microsatellite loci (Sat2, Sat8, Sat12, INRACCDDv358, Lsa2, Sol30Le) from a total of 342 specimens from three species: Lepus granatensis, Lepus europaeus and Lepus timidus. Population code and number are indicated in the second and third column respectively.
DOI: 10.5061/dryad.qj864/2
title: Melo_Ferreira_et_al_PHKA2_complete

description: Final alignment of PHKA2 sequences used in this work. Data is phased - alternative alleles in females are indicated by a and b.
DOI: 10.5061/dryad.qj864/3
title: Melo_Ferreira_et_al_SMCX_complete

description: Final alignment of SMCX sequences used in this work. Data is phased - alternative alleles in females are indicated by a and b.
DOI: 10.5061/dryad.rn228/1
title: MargPops48_UTMs

description: This is a list of the spatial coordinates for the populations and subpopulations referenced in the paper.
DOI: 10.5061/dryad.rn228/2
title: GAEPopReg20Nov12

description: This is a file of raw microsatellite genotypes by population for Margaritifera falcata in the western United States.  The data are in GenAlEx format.
DOI: 10.5061/dryad.rn228/3
title: Margaritifera falcata COI-F mitochondrial haplotypes

description: This is a spreadsheet delineating mitochondrial haplotypes and associated GenBank accessiong numbers for a set of Margaritifera falcata samples from the western United States.
DOI: 10.5061/dryad.s8330/1
title: fitness data assay block 1

description: Contains the fitness data for all MA lines as well as the number of generations of MA associated with each line
DOI: 10.5061/dryad.s8330/2
title: 2nd fitness assay

description: contains fitness data for all lines from the second assay block
DOI: 10.5061/dryad.s8330/3
title: generation time data

description: Contains the data on colony numbers used to calculate the generation times of lines growing on plates during the MA part of the experiment
DOI: 10.5061/dryad.sc574/1
title: The metabolic and demographic composition of attine colony-farms

description: The raw data used for statistical inference regarding attine metabolism (MR, µl CO2 hr^-1) and demography. All masses are dry weight (mg). For Apt. dentigerum and C. longiscapus colony-farms, we did not make separate recordings of garden MR after removing workers. For these two species, we thus present only a whole colony-farm MR measurement. Mass is dry mass in mg. Locality abbreviations: Arizona (A), Barro Colorado Island, Panama (P), Oklahoma (O), Texas (T). Garden mass and MR contains embedded larvae. Notes: * 2 queens, whose individual masses were 0.44 and 0.40 mg, § worker mass includes 16 males (5.84 mg, 19% of total mass), ∫ Queen not removed prior to measurement of worker MR.
DOI: 10.5061/dryad.sc574/2
title: The metabolic and demographic composition of hunter-gather colonies.

description: Raw data used to analyze the metabolic rate (MR; µ l CO2 hr-1) and demography of hunter-gatherer colonies. Collection localities are either Oklahoma (O) or Panama (P). N refers to the number of colonies sampled for a given species. Worker number and mass sums minor and majors for colonies of Pheidole. Reproductive mass sums adult male and female alate tissue. Mass is dry mass in mg. Means followed by SD in parentheses.
DOI: 10.5061/dryad.sc574/3
title: Data used to calculate mass-specific metabolic rates of workers

description: Data used for examination of individual worker metabolic rates (MR: µl CO2 mg-1 hr-1), presented in online figure A2. Mass values are dry mass (mg).
DOI: 10.5061/dryad.sc574/4
title: Data for comparison of mass-specific MR of workers and fungus gardens

description: Mean mass-specific metabolic rate (MR; µl CO2 mg-1 hr-1) for workers and fungal gardens, and results of one sample t-tests comparing worker MR with the mean value for their fungal gardens. Size measured as dry mass. N indicates number of individual workers measured for MR, and the number of individual colonies from which fungal gardens were measured for MR. Means followed by SD in parentheses.
DOI: 10.5061/dryad.sc574/5
title: Accession numbers for the sequences used to infer the ant phylogeny

description: Accession numbers for the sequences used to infer the ant phylogeny. In species where molecular data were not available (indicated with *), we used sequences from closely related congeners. COI barcodes for the species listed as ‘Processing’ were provided by D. Donoso and obtained in collaboration with the Biodiversity Institute of Ontario, using sequencing techniques and analytical tools in the Barcode of Life Database (BOLD; www.boldsystems.org/). New sequences for the study, as well as sequences for C. sumichrasti and P. villosa, are publicly available in the BOLD database, in the project ‘AOFBA’ named Ants of BCI_2_Project Atta. Molecular data included three genes: Cy-tochrome Oxidase I (COI; mitochondrial), wingless (nuclear), and long wavelength rho-dopsin (LWRh; nuclear).
DOI: 10.5061/dryad.0jj03/1
title: Model realizations

description: A CSV file containing summaries of the results of all model realizations
DOI: 10.5061/dryad.0jj03/2
title: Per-generation data for realization 4595

description: Metrics for each of the 50,000 post-burn-in generations of model realization 4595.
DOI: 10.5061/dryad.0jj03/3
title: Per-generation data for realization 4631

description: Metrics for each of the 50,000 generations of model realization #4631
DOI: 10.5061/dryad.1cc4v/1
title: Data on the annual home range of Charlevoix caribou

description: Description of the home range data collected using VHF telemetry from 1999-2000, and GPS telemetry from 2004-2011, on 87 forest-dwelling caribou in the Charlevoix region of Québec, Canada. Each row corresponds to one annual home range (one individual-year). Included are data on individuals (ID, sex, age, type of collar); telemetry program (year, start- and end-dates of monitoring, and duration); status of individuals for the broad scale survival analysis (whether individuals died [1=died], and of which cause [1=predation, 2=natural, 4=undetermined]); information on reproductive success of females from 2004-2007 (whether females had a calf [1=calved], and whether he survived through its first year of life [1=survived]); information on space use (home range size and mean movement rate); and finally home range composition (active, derelict, and total road density, and percentage of each habitat class).
DOI: 10.5061/dryad.390m3/1
title: FIGURE 1

description: £D PDF of the digital surface model of the skull and dermal shoulder girdle of Dunkleosteus terrelli. 3D content can be activated by clicking on the figure.
DOI: 10.5061/dryad.41hc4/2
title: HeadShapeMeans

description: Mean head shape data for nine Plethodon salamander species used in empirical example
DOI: 10.5061/dryad.4365v/1
title: Sim_data_mb

description: Data from simulated random mating under male bias
DOI: 10.5061/dryad.4365v/2
title: Sim_data_fb

description: Data from simulated random mating under female bias
DOI: 10.5061/dryad.4365v/3
title: Sex.sel.measures

description: Mesures of sexual selection calculated per replicate for each treatment and sex.
DOI: 10.5061/dryad.4365v/4
title: matingandreproductivesuccess

description: mating and reproductive success and standardized length for all individuals
DOI: 10.5061/dryad.44b50/1
title: Data_upload

description: Listing of all tetrapod species, from Devonian to Early Jurassic inclusive, together with stratigraphic and geographic distribution. The data were compiled from the literature, up to February 2012.
DOI: 10.5061/dryad.46kb4/1
title: Li et al. data of in four Epimedium species

description: Five data files as presented in main experiment of the article.
DOI: 10.5061/dryad.493jh/1
title: Genotypes for threespine sticklebacks

description: FSTAT format; genotypes for 138 microsatellite markers used in DeFaveri et al. "High degree of genetic differentiation in marine three-spined sticklebacks (Gasterosteus aculeatus)". Population codes and sampling information can be found in Table 1.
DOI: 10.5061/dryad.4dp00/1
title: HarveyFortinDataset S1

description: Field data
DOI: 10.5061/dryad.50jc4/1
title: Scripts to repeat the study

description: These are scripts to repeat the published study. Some of the code is LDNe specific and thus is not needed to replicate the work.
DOI: 10.5061/dryad.5k56c/1
title: Hawaiian Ligia Data

description: Includes all morphometrics and molecular data used in the publication.
DOI: 10.5061/dryad.89c3r/1
title: DRYAD.Copy numbers.Expression.ParasitismAssays

description: EXCEL FILE: Tab1) Symbiont copy numbers and natural log transformations from qPCR data. Values are corrected with EF-1 aphid reference gene. Adjusted to reflect whole-aphid values. Tab2) Toxin expression and reference gene data. Values are unadjusted qPCR copy numbers. Tab3) Parasitism assays for levels of aphid resistance.
DOI: 10.5061/dryad.89c3r/2
title: cdtB

description: Alignment of cdtB alleles.
DOI: 10.5061/dryad.8n2f2/1
title: Jura1

description: Genotypes of the individuals of the Jura 1 transect. Missing data are scored by a -9
DOI: 10.5061/dryad.8n2f2/2
title: Jura2

description: Genotypes of the individuals of the Jura 2 transect. Missing data are scored by a -9
DOI: 10.5061/dryad.8n2f2/3
title: Bavaria

description: Genotypes of the individuals of the Bavaria transect. Missing data are scored by a -9
DOI: 10.5061/dryad.8n2f2/4
title: MtDNA & Ychromsomes

description: MtDNA and Y chromosome origin for each individuals.
DOI: 10.5061/dryad.97j4b/1
title: Supplementary Appendix 1

description: Supplementary material, Appendix 1. Table 1, rough data with the stage of tooth eruption of living marsupials and extinct stem taxa. Table 2, reduced data with 76 specimens.Table 3, ranking of tooth eruption sumarized per genera.Table 4, sequence of tooth eruption per genera used in the event-pairing analysis.
DOI: 10.5061/dryad.97j4b/2
title: Supplementary Appendix 2

description: Description of tooth eruption timing in the Sparassodonta, morphology of the deciduous premolar of sparassodonts and Prothylacynus patagonicus: the taxonomy of specimen MACN-A 642.
DOI: 10.5061/dryad.98c81/3
title: AMF data Experiment 1

description: AMF data Experiment 1
DOI: 10.5061/dryad.98c81/4
title: AMF data Experiment 2

description: AMF data Experiment 2
DOI: 10.5061/dryad.98c81/5
title: Cluster root data Knightia excelsa

description: Cluster root data Knightia excelsa (Experiment 1)
DOI: 10.5061/dryad.b21r5/1
title: Contigs from Library 1

description: An unannotated version of the trascriptome assembly (contigs and unigenes) is presented here.
DOI: 10.5061/dryad.b21r5/2
title: Contigs from Library 2

description: An unannotated version of the trascriptome assembly (contigs and unigenes) is presented here.
DOI: 10.5061/dryad.b21r5/3
title: All-Unigene

description: An unannotated version of the trascriptome assembly (contigs and unigenes) is presented here.
DOI: 10.5061/dryad.b21r5/4
title: Sequence assembly and Contig annotation

description: The raw reads were used to generate a de novo assembly. High quality reads were then assembled into contigs and tese contigs were then further assembled into unigenes using paired end information to combine contigs that arose from the same transcript.
DOI: 10.5061/dryad.b21r5/5
title: Blast hits

description: All unigenes were screened against protein databases Nr, SwissProt, KEGG and COG using BLASTx (e-value&lt;10-5) and against nucleotide database Nt using BLASTn (e-value&lt;10-5). The best hits were used to determine the sequence direction of the unigenes.
DOI: 10.5061/dryad.c3287/1
title: Hargreaves etal (2013) AmNat metaanalysis data

description: Excel file with three data sheets and a sheet explaining all column headings. 'metaanalysis performance data' gives extracted values for each performance parameter in each region for each test, 'best.comparison data' gives single best measure of relative beyond-range performance for each test along with RLvsNL designation and test-specific data, and '&gt;1Bsite.paired' includes only tests with &gt;1 Beyond-range transplant site, gives best measure of relative performance calculated for B site closest to range limit (RL) and B site farthest from RL
DOI: 10.5061/dryad.fc3sh/2
title: cytb_ALIGNED

description: cytb Alignment in phylip format
DOI: 10.5061/dryad.fc3sh/3
title: NCX1_ALIGNED

description: NCX1 Alignment in phylip format
DOI: 10.5061/dryad.fc3sh/4
title: POMC_ALIGNED

description: POMC Alignment in phylip format
DOI: 10.5061/dryad.fc3sh/5
title: Rag1_ALIGNED

description: RAG-1 Alignment in phylip format
DOI: 10.5061/dryad.gr1qp/1
title: Benson et al. dinosaur body mass
DOI: 10.5061/dryad.hk860/3
title: Complete host associations with C. jejuni ST clonal complexes

description: Complete host associations with C. jejuni ST clonal complexes, using data extracted from pubMLST as of 26th May 2011, used in the associated publication to produce Fig. 1B.
DOI: 10.5061/dryad.j3823/1
title: Dowling et al, Life span data - Individual Level

description: Treatment = Maternal Sexual Treatment (A= baseline, B = Pre-copulatory only, C = Pre- plus post-copulatory)
DOI: 10.5061/dryad.j3823/2
title: Dowling et al, Ageing data
DOI: 10.5061/dryad.jp8r1/1
title: Lemmus sequence alignment for the partial dataset (172 bp)

description: Combined mitochondrial data. Control region: position 1-96; Cytochrome b: position 97-172.
DOI: 10.5061/dryad.jp8r1/2
title: Lemmus sequence alignment for the complete dataset (520 bp)

description: Combined mitochondrial data. Control region: position 1-168; Cytochrome b: position 169-520.
DOI: 10.5061/dryad.jp8r1/3
title: Lemmus.partial.11.7.inputBEAST

description: Input file to BEAST, for analysing the partial dataset using a mutation rate of 11.7 % per million years
DOI: 10.5061/dryad.jp8r1/4
title: Lemmus.partial.11.7.result.BEAST

description: Tree file obtained from BEAST and summarised in TreeAnnotator. For the partial dataset using a mutation rate of 11.7 % per million years
DOI: 10.5061/dryad.jp8r1/5
title: Lemmus.partial.30.inputBEAST

description: Input file to BEAST, for analysing the partial dataset using a mutation rate of 30 % per million years
DOI: 10.5061/dryad.mf0ns/1
title: Shorebirds physiological data

description: This datasets contains data measured over ~1 on shorebirds (Calidris canutus) caught in the wild and kept in captivity. Specifically, the dataset includes 11 physiological biomarkers, two mass measurements, one performance measure (maximal thermogenic capacity), one health variable (foot inflammation) and information about treatment and measurment times for 31 birds. See Milot et al (accompagning paper) and references therein (Vézina et al. 2006; 2011; Buehler et al. 2008) for details about the experimental setup. The data is in excel format and ready for input in R. A sheet also describe each variable.
DOI: 10.5061/dryad.n6t2c/1
title: Capture times

description: Capture times for all experiments (1,2,3,4A,4B,4C), containing all data used for statistical analysis.
DOI: 10.5061/dryad.nd779/1
title: Grinsted et al. 2013 Proceedings B online data

description: All data, raw and summarized, used for the statistical analyses in this paper. Data was collected both in the field and in the laboratory in India, and all analyses were performed in R.
DOI: 10.5061/dryad.nr916/1
title: Microsatellite genotypes of Lactuca serriola

description: This file contains information about the geographic origin and genotypes at 7 microsatellite loci of every individual included in the population genetics analysis of introduction history in Lactuca serriola. Data were obtained from molecular analyses of plants raised from wild-collected seeds (see paper for details), and includes data collected for an earlier study (Alexander et al. 2009, see references). Fragment lengths were scored using GeneMapper v.4.1 software (Applied Biosystems).
DOI: 10.5061/dryad.nr916/2
title: Phenological and size traits of Lactuca serriola

description: This file contains data about Lactuca serriola plants from 55 populations raised in a common garden (climate chamber) experiment. Data describe the geographic and climatic origin of plants, their flowering phenology, reproductive output and size at different developmental stages when raised under controlled environmental conditions.
DOI: 10.5061/dryad.qj864/4
title: Melo_Ferreira_et_al_MSN_complete

description: Final alignment of MSN sequences used in this work. Data is phased - alternative alleles in females are indicated by a and b.
DOI: 10.5061/dryad.qj864/5
title: Melo_Ferreira_et_al_HPRT1_complete

description: Final alignment of HPRT1 sequences used in this work. Data is phased - alternative alleles in females are indicated by a and b. A polymorphic poly-T of undetermined length was removed.
DOI: 10.5061/dryad.qq304/1
title: Dryad_Experiment_1

description: Data for Experiment 1A-1E. Collected in the lab. Created in microsoft excel.
DOI: 10.5061/dryad.qq304/2
title: Dryad_Experiment_2

description: Covers Experiments 2A-2C. Collected in the lab. Created in Microsoft Excel.
DOI: 10.5061/dryad.qq304/3
title: Dryad_Experiment_3

description: Covers Experiments 3A and 3B. Collected in the lab. Created in Microsoft excel.
DOI: 10.5061/dryad.qq304/4
title: Dryad_Experiment_4

description: Data for Experiments 4A-4C.
DOI: 10.5061/dryad.tf25c/1
title: Fig2_ingroup_only_PCG12

description: Ingroup taxa only of PCG12 in Figure 2
DOI: 10.5061/dryad.tf25c/2
title: Fig2_ingroup_only_PCG12RT

description: Ingroup taxa only of PCG12RT in Figure 2
DOI: 10.5061/dryad.tf25c/3
title: Fig2_ingroup_only_PCG123

description: Ingroup taxa only of PCG123 in Figure 2
DOI: 10.5061/dryad.tf25c/4
title: Fig2_ingroup_only_PCG123RT

description: Ingroup taxa only of PCG123RT in Figure 2
DOI: 10.5061/dryad.tf25c/5
title: Fig3A_additional_outgroups

description: Add additional closely related outgroups including the distant outgroup in Figure 3A
DOI: 10.5061/dryad.tf25c/6
title: Fig3B_additional_outgroups_exclude_Lycoma

description: Add additional closely related outgroups excluding the distant outgroup in Figure 3B
DOI: 10.5061/dryad.tf25c/7
title: Fig4_16(PCG12)

description: Add new mitochondrial genome of Paraplea frontalis in Figure4
DOI: 10.5061/dryad.tf25c/8
title: Fig4_16(PCG123)

description: Add new mitochondrial genome of Paraplea frontalis in Figure 4
DOI: 10.5061/dryad.vs23b/1
title: Data on thermal conductance for 127 rodent species

description: Data on minimal thermal conductance for 127 rodent species, together with data on body mass, basal metabolic rate, and several geographic, climatic and ecological variables.
DOI: 10.5061/dryad.vv840/1
title: mesocottusDATAMATRIXandTREES.x

description: Data matrix (NEXUS format) used to estimate the phylogenetic position of Mesocottus. The matrix contains alignment of six complete (Clinocottus analis, Trachidermus fasciatus, Mesocottus haitej, Cottus reinii, C. koreanus and C. hangiongensis) and two partly sequenced (Rheopresbe kazika and Leptocottus armatus) mitogenomes of the Cottidae, as well as the mitogenomes of outgroup taxa – Lycodes toyamensis (Zoarcidae), Anoplopoma fimbria (Anaplopomatidae), Arctoscopus japonicus (Trichodontidae) and Aptocyclus ventricosus (Cyclopteridae). In addition, it contains the final phylogenetic trees.
DOI: 10.5061/dryad.05k14/1
title: Werner_NFix

description: Full angiosperm symbiotic N2-fixation database. For full details, please see ReadMe file.
DOI: 10.5061/dryad.08h3j/1
title: Microsatellite

description: Data on microsatellite genenotypes
DOI: 10.5061/dryad.08h3j/2
title: mtDNA

description: Data on mtDNA genotypes
DOI: 10.5061/dryad.0jj03/4
title: Data on selective deaths per generation for realization 4595

description: Data on selective deaths per generation for realization 4595
DOI: 10.5061/dryad.0jj03/5
title: Data on selective deaths per generation for realization 4631

description: Data on selective deaths per generation for realization 4631
DOI: 10.5061/dryad.0jj03/6
title: Selection gradients

description: Histogram (i.e. binned) data on selection gradients from all model realizations
DOI: 10.5061/dryad.0jj03/7
title: README

description: Information on all files in this Dryad repository
DOI: 10.5061/dryad.1c88s/1
title: Raw data and analytical code

description: These files contain all the raw data for "Hybridization occurs between Drosophila simulans and D. sechellia in the Seychelles archipelago" by D. R. Matute and J. F. Ayroles. All datasets are in .csv format. The code and statistical results are also included in a single R file.
DOI: 10.5061/dryad.1vh94/1
title: Diapause termination

description: Respirometry Measures for diapause termination time point
DOI: 10.5061/dryad.1vh94/2
title: Diapause

description: Respirometry measures for diapause
DOI: 10.5061/dryad.29470/1
title: Data from Preston et al. FE

description: The data file consists of a metadata tab and seven data tabs. The metadata describes the contents of the data tabs.
DOI: 10.5061/dryad.2kj82/1
title: Annavi et al Datafile (Dryad)

description: This file contain climate, demographic, survival, inbreeding and single-locus (SCL) individual, maternity and paternity data