cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.p23n5q
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Butis amboinensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 36 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025009-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8du6x
title: Occurrence Download

description: A dataset containing 244225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-8.7 20.6,70.2 20.6,70.2 71,-8.7 71,-8.7 20.6))",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Heracleum mantegazzianum, Heracleum sosnowskyi)"
 ]
}

 The dataset includes 244225 records from 520 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011933-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/dans-zft-7bww
title: Militair oefenterrein Oirschot
title: Militair oefenterrein Oirschot

description: &lt;p&gt;onderzoeksrapport&lt;/p&gt;
description: &lt;p&gt;archeologische inventarisatie en booronderzoek in het kader van de MER&lt;/p&gt;
DOI: 10.17026/ar/aw8xdo
title: AM25421-2 - Archeologisch inventariserend veldonderzoek, verkennende fase door middel van boringen Hereweg 52 te Landgraaf (Gemeente Landgraaf)

description: In de periode november 2025 – januari 2026 is door Aeres Milieu een archeologisch verkennend booronderzoek uitgevoerd aan de Hereweg 52 te Landgraaf, in de gelijknamige gemeente. Aanleiding voor het laten uitvoeren van dit archeologisch onderzoek betreft een buitenplanse omgevingsplanactiviteit (BOPA) ten behoeve van de realisatie van 34 nieuwbouw appartementen op de locatie. Voor de realisatie van de nieuwbouw appartementen zullen de funderingen worden aangebracht op een diepte van circa 1240 millimeter beneden peil. Verder worden er ook kruipruimten voorzien waarvan de ontgravingsdiepte circa 1340 millimeter beneden peil zullen zijn en verder ook een liftschacht waarvan de ontgravingsdiepte circa 1800 millimeter beneden peil zal reiken. Voor het plangebied is het peil vastgesteld op de hoogte van 157,30 meter +NAP. De verwachting is dan ook dat bij het uitgraven van de bouwputten, ten behoeve van de voorgenomen nieuwbouw, de bodem tot in het archeologische niveau verstoord zal worden en eventueel aanwezige archeologische waarden daardoor verloren zullen gaan. De onderzoekslocatie ligt volgens de archeologische verwachtings- en beleidskaart van de gemeente Landgraaf in een gebied met ‘Waardecategorie 3: Gebieden met een hoge verwachtingswaarde’. Verder valt het plangebied binnen het bestemmingsplan “Facet bestemmingsplan Archeologie” (vastgesteld in december 2016). Hierbinnen heeft het de waarde ‘Waarde – Archeologie 3 (Gebieden met een hoge verwachtingswaarde)’. Voor deze zone geldt een onderzoeksplicht bij bodemingrepen met een oppervlakte boven de 250 m² en een diepte van meer dan 40 centimeter beneden maaiveld. Middels deze kaart heeft de gemeente aangegeven dat de locatie onderzoeksplichtig is. Op basis van het uitgevoerd verkennend veldonderzoek middels boringen kan worden gesteld dat de natuurlijke bodem van het plangebied sterk is verstoord vermoedelijk als gevolg van (sub-)recente grondbewerking en bodemerosie. De oorspronkelijke bodemopbouw is verdwenen. De archeologische verwachting voor de perioden midden-paleolithicum – nieuwe tijd wordt op basis van de resultaten en deze gegevens naar laag gezet. Voor het plangebied wordt om bovenstaande redenen geen archeologisch vervolgonderzoek noodzakelijk geacht. De resultaten van dit onderzoek dienen getoetst te worden door de bevoegde overheid (gemeente Landgraaf), die op basis van het uitgebrachte advies een besluit zal nemen. Wij willen de opdrachtgever erop wijzen dat dit selectieadvies nog niet betekent dat er al bodemverstorende activiteiten of daarop voorbereidende activiteiten kunnen worden ondernomen. Het uitgevoerde onderzoek is verricht conform de gestelde eisen en gebruikelijke methoden. Het onderzoek is gericht op het inzichtelijk maken van de toestand van het bodemarchief. Hiermee kan de beschadiging, dan wel vernietiging, als gevolg van de voorgenomen verstoring van een mogelijk aanwezig bodemarchief tot een minimum worden beperkt.
DOI: 10.26106/ay4p-4930
title: FASTQ files from NGS 16S bacterial DNA sequencing : effect of butyrate and beta-glucan on HFD

description: FASTQ files from NGS 16S bacterial DNA sequencing - effect of butyrate and beta-glucan on HFD
DOI: 10.15468/dl.79uvgt
title: Occurrence Download

description: A dataset containing 929 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Doryteuthis gahi",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 10",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 929 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011963-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.py59g5
title: Occurrence Download

description: A dataset containing 14027 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ageratina adenophora, Chromolaena odorata)",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14027 records from 331 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011964-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9m5vj4
title: Occurrence Download

description: A dataset containing 10301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphis spiraecola"
 ]
}

 The dataset includes 10301 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011965-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4s6u6t
title: Occurrence Download

description: A dataset containing 1037 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucommia ulmoides",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1037 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011969-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5uwszx
title: Occurrence Download

description: A dataset containing 328 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abutilon crispum"
 ]
}

 The dataset includes 328 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011970-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qu7gnt
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kazakhstan",
 "Geometry POLYGON((13.88120 20.86132,117.11880 20.86132,117.11880 62.13868,13.88120 62.13868,13.88120 20.86132))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ferula caspica"
 ]
}

 The dataset includes 36 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011972-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jm5qv
title: Occurrence Download

description: A dataset containing 263 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Shorea almon"
 ]
}

 The dataset includes 263 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011971-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18347066
title: EINN: Enzyme Informed Neural Network
DOI: 10.5281/zenodo.18347065
title: EINN: Enzyme Informed Neural Network
DOI: 10.15468/dl.8gtazr
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kazakhstan",
 "Geometry POLYGON((60.35277 39.24421,96.64723 39.24421,96.64723 53.75579,60.35277 53.75579,60.35277 39.24421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ferula ferulaeoides"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011973-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4zg5y
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kazakhstan",
 "Geometry POLYGON((33.19491 21.38487,113.80509 21.38487,113.80509 53.61513,33.19491 53.61513,33.19491 21.38487))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ferula karelinii"
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011974-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gatuw8
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Dacrycarpus cumingii"
 ]
}

 The dataset includes 166 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011976-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/e95th6
title: The identity of Chivinia Shestakov (Hymenoptera: Braconidae, Braconinae), with description of a similar species from the Oriental region

description: This dataset contains the digitized treatments in Plazi based on the original journal article Long, Khuat Dang, Achterberg, Cornelis Van, Dzuong, Nguyen Van, Oanh, Nguyen Thi, Mai, Pham Quynh (2023): The identity of Chivinia Shestakov (Hymenoptera: Braconidae, Braconinae), with description of a similar species from the Oriental region. Zootaxa 5343 (6): 531-538, DOI: 10.11646/zootaxa.5343.6.3, URL: https://www.mapress.com/zt/article/download/zootaxa.5343.6.3/51848AbstractA peculiar new species from Vietnam (Bracon (Pseudochivinia) tobiasi Long & van Achterberg, sp. nov.) is described and illustrated. It is included in a new subgenus Pseudochivinia Long & van Achterberg, subgen. nov., because it does not fit into the superficially similar subgenus Chivinia Shestakov. The new subgenus shares with Chivinia Shestakov the absence of vein r-m of the fore wing (resulting in the absence of a closed second submarginal cell) but can be distinguished from Chivinia and other subgenera of the genus Bracon Fabricius by the deep and crenulate medio-longitudinal depression of the first metasomal tergite and the different venation. Bracon (Chivinia) zimini Shestakov, 1932 is redescribed and illustrated for the first time.
DOI: 10.15468/dl.3abhk2
title: Occurrence Download

description: A dataset containing 2224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-100 -10,36.5 -10,36.5 75,-100 75,-100 -10))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (December, November, October, September, August, July, June, May, April, March, February, January)",
 "OccurrenceStatus is Present",
 "TaxonKey is Thunnus thynnus",
 "Year 2008-2024"
 ]
}

 The dataset includes 2224 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011977-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wumc3j
title: Occurrence Download

description: A dataset containing 278342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Sweden, Norway, United Kingdom of Great Britain and Northern Ireland, Denmark, Netherlands, Iceland, Finland, Spain)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gaviiformes",
 "Year 2021-2023"
 ]
}

 The dataset includes 278342 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011936-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31045846
title: Mitogenome and plastome annotation of four <i>Hypericum </i>species from DToL

description: Mitogenome and plastome annotation for Hypericum from DToL.
DOI: 10.6084/m9.figshare.31045846.v1
title: Mitogenome and plastome annotation of four <i>Hypericum </i>species from DToL

description: Mitogenome and plastome annotation for Hypericum from DToL.
DOI: 10.4121/7d076e3c-a49c-4341-936c-52ca21f9fe97
title: Data and code for "A Robust Strontium Tweezer Apparatus for Quantum Computing"

description: Data and code for "A Robust Strontium Tweezer Apparatus for Quantum Computing". This dataset contains raw data collected from camera images of Magneto-Optical Traps, as well as camera images of single atoms trapped in optical tweezers, and the processed data from these camera images with corresponding Python code to reproduce the plots in the manuscript.
DOI: 10.4121/7d076e3c-a49c-4341-936c-52ca21f9fe97.v1
title: Data and code for "A Robust Strontium Tweezer Apparatus for Quantum Computing"

description: Data and code for "A Robust Strontium Tweezer Apparatus for Quantum Computing". This dataset contains raw data collected from camera images of Magneto-Optical Traps, as well as camera images of single atoms trapped in optical tweezers, and the processed data from these camera images with corresponding Python code to reproduce the plots in the manuscript.
DOI: 10.5281/zenodo.17945143
title: Colocalisation results for the Tambets et al NMR metabolic trait GWAS study

description: Main colocalisation results



meta_EUR_big_coloc_151025.tsv.gz - table with the main colocalisation results used in the manuscript. The code for generating this table is avaliable from GitHub.

meta_EUR_big_coloc_browser_formatted.tsv.gz - version of the main colocalisation table that has been reformatted for the colocalisation browser available at https://elixir.ut.ee/eqtl/nmr-coloc.


Column names of the main colocalisation table:



PP.H3 - Posterior probability of coloc hypothesis 3: two distinct causal variants                

PP.H4 - Posterior probability of coloc hypothesis 4: one shared causal variant                

signal1 - Name of the colocalising trait signal                

lead1 - Lead variant of the colocalising trait signal                

signal2 - Name of the metabolic trait signal                

lead2 - Lead variant of the metabolic trait signal                

metabolite - Name of the metabolic trait                

maf2 - Minor allele frequency of the metabolic trait lead variant (lead2)                

log10p2 - Negative log10 p-value of the metabolic trait lead variant associaiton                

gene_symbols - Names of three closest genes                

UKBPPP_ProteinID - Protein ID of the colocalising UKB-PPP pQTL signal                

signal1_trait - Name of the colocalising trait                

source - Colocalisation source                

quant_method - RNA-seq quanatifiction method (for eQTL Catalogue colocalisations only)                

molecular_trait_id - eQTL Catalogue molecular trait id                

cluster - Unique identifier for each clolocalisation cluster                

n_metabolites - Number of distinct metabolic traits belonging to the colocalisation cluster      


In addition to these main results, we also provide the raw gpu-coloc colocalisation outputs for individual data sources:



FinnGen_lbf_coloc.tar.gz

FinnGen_abf_coloc.tar.gz

eQTL_Catalogue_coloc.tar.gz

PANUKBB_coloc.tar.gz

Suzuki_Aragam_coloc.tar.gz

MVP_coloc.tar.gz

INTERVAL_coloc.tar.gz

UKBPPP_coloc.tar.gz
DOI: 10.5281/zenodo.17945142
title: Colocalisation results for the Tambets et al NMR metabolic trait GWAS study

description: Main colocalisation results



meta_EUR_big_coloc_151025.tsv.gz - table with the main colocalisation results used in the manuscript. The code for generating this table is avaliable from GitHub.

meta_EUR_big_coloc_browser_formatted.tsv.gz - version of the main colocalisation table that has been reformatted for the colocalisation browser available at https://elixir.ut.ee/eqtl/nmr-coloc.


Column names of the main colocalisation table:



PP.H3 - Posterior probability of coloc hypothesis 3: two distinct causal variants                

PP.H4 - Posterior probability of coloc hypothesis 4: one shared causal variant                

signal1 - Name of the colocalising trait signal                

lead1 - Lead variant of the colocalising trait signal                

signal2 - Name of the metabolic trait signal                

lead2 - Lead variant of the metabolic trait signal                

metabolite - Name of the metabolic trait                

maf2 - Minor allele frequency of the metabolic trait lead variant (lead2)                

log10p2 - Negative log10 p-value of the metabolic trait lead variant associaiton                

gene_symbols - Names of three closest genes                

UKBPPP_ProteinID - Protein ID of the colocalising UKB-PPP pQTL signal                

signal1_trait - Name of the colocalising trait                

source - Colocalisation source                

quant_method - RNA-seq quanatifiction method (for eQTL Catalogue colocalisations only)                

molecular_trait_id - eQTL Catalogue molecular trait id                

cluster - Unique identifier for each clolocalisation cluster                

n_metabolites - Number of distinct metabolic traits belonging to the colocalisation cluster      


In addition to these main results, we also provide the raw gpu-coloc colocalisation outputs for individual data sources:



FinnGen_lbf_coloc.tar.gz

FinnGen_abf_coloc.tar.gz

eQTL_Catalogue_coloc.tar.gz

PANUKBB_coloc.tar.gz

Suzuki_Aragam_coloc.tar.gz

MVP_coloc.tar.gz

INTERVAL_coloc.tar.gz

UKBPPP_coloc.tar.gz
DOI: 10.15468/dl.rftu89
title: Occurrence Download

description: A dataset containing 865 records in GBIF matching the query:
SELECT
 '445' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 41.89415215079384
 AND decimalLatitude &lt;= 46.479780028101516
 AND decimalLongitude &gt;= 53.94667277126278
 AND decimalLongitude &lt;= 62.94398091796209
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 865 records were derived from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011950-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3znsv
title: Occurrence Download

description: A dataset containing 92910 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alternaria"
 ]
}

 The dataset includes 92910 records from 342 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011935-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31228354
title: <b>Observed and Synthetic Seismic Waveforms for Yang et al. (2026)</b>

description: This repository provides processed seismic waveforms and supporting synthetic seismograms used in our analysis of the earthquake pairs examined in our paper, enabling reproducible time-shift measurements and figure regeneration.
DOI: 10.6084/m9.figshare.31228354.v1
title: <b>Observed and Synthetic Seismic Waveforms for Yang et al. (2026)</b>

description: This repository provides processed seismic waveforms and supporting synthetic seismograms used in our analysis of the earthquake pairs examined in our paper, enabling reproducible time-shift measurements and figure regeneration.
DOI: 10.5281/zenodo.11210357
title: Dataset for article "Topological material in the III–V family: Heteroepitaxial InBi on InAs" published in Physical Review Research volume 6 on the 8th of November 2024

description: The publication is a mix of experiment data, including LEED, STM, ARPES, ab-initio calculations, incluging SPRKKR and a Tight Binding model. The raw data of many of the figures can be found in the Data subfolder. Please see the corresponding readme files fore more explanations.
DOI: 10.5281/zenodo.11210358
title: Dataset for article "Topological material in the III–V family: Heteroepitaxial InBi on InAs" published in Physical Review Research volume 6 on the 8th of November 2024

description: The publication is a mix of experiment data, including LEED, STM, ARPES, ab-initio calculations, incluging SPRKKR and a Tight Binding model. The raw data of many of the figures can be found in the Data subfolder. Please see the corresponding readme files fore more explanations.
DOI: 10.5281/zenodo.15283429
title: Dataset for article "Topological material in the III–V family: Heteroepitaxial InBi on InAs" published in Physical Review Research volume 6 on the 8th of November 2024

description: The publication is a mix of experiment data, including LEED, STM, ARPES, ab-initio calculations, incluging SPRKKR and a Tight Binding model. The raw data of many of the figures can be found in the Data subfolder. Please see the corresponding readme files fore more explanations.