cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25403/upresearchdata.25506832.v1
title: Levels of genetic diversity, population structure and introduction history of the S. noctilio-A. areolatum-D. siricidicola populations in Australasia

description: <em>Sirex noctilio</em> and its symbiotic fungus <em>Amylostereum areolatum</em> has threatened pine plantations in Australasia, and many other countries worldwide. The biological control nematode <em>Deladenus siricidicola</em> has been used to manage the populations of this pest complex for over 60 years. To gain insight into any potential ‘strains’ that may contribute to variable biocontrol success the researcher further examined the reproductive rates of nematode diversity in Australia on different fungal strains and media types.  Mitochondrial (mtCOI and mtSSU rRNA) sequence data and microsatellite markers were applied in the population genetics studies. Compared to other introduced populations worldwide, lower genetic diversity was found in Australasia, and there was no structure in populations between Australia and New Zealand.
<br>
The high level of clonality in the <em>A. areolatum</em> population could be exploited for the management program using the nematode by rearing the nematode on the dominant clone. The behavioral study between the lineages B and D strains of <em>D. siricidicola</em> indicates significant variation in the reproductive rates when feeding on four different fungal strains and two media types. Lineage D strains show higher reproductive rates than the Kamona strain and other strains in lineage B, on all treatments in our trials. Taken together, the diversity identified in <em>D. siricidicola</em> populations in this thesis underscores the importance of post-release monitoring in the biocontrol program.
DOI: 10.3535/c06-nd1-7ht
title: Bioerosional trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/slv-41y-hes
title: Bioerosional trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22765112.v3
title: DepMap 23Q2 Public

description: This DepMap release contains data from CRISPR knockout screens from project Achilles, as well as genomic characterization data from the CCLE project.<br>For more information, please see README.txt.
DOI: 10.6084/m9.figshare.28358681.v2
title: <b>Original data and Supplementary materials——Alterations in oral microbiome after CoronaVac vaccination and its relationship with immunogenicity</b>

description: 研究论文“CoronaVac 疫苗接种后口腔微生物组的改变及其与免疫原性的关系”的补充材料
DOI: 10.3535/djr-ymd-hcl
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12311918.v2
title: Article Types by day

description: COVID articles per day based on the dimensions search for COVID-19
DOI: 10.6084/m9.figshare.25027592.v1
title: Full assemblies derived from single cells (SC1-SC3) and bulk culture DNA of <i>Eutreptiella</i> CCMP3347.

description: Contains fasta files of assemblies generated in SPAdes from Illumina reads.
DOI: 10.3535/1ka-dg5-htl
title: Anoigmaichnus zapalskii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c4n-9xv-7xp
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11734464.v1
title: Differentially-expressed genes of DTC patients from the TCGA-THCA data set

description: |log(fold change)| &gt; 1 and False Discovery Rate (FDR) &lt;0.05 were set to the screen DEGs in cancerous and paracancerous tissue of DTC patients
DOI: 10.6084/m9.figshare.2068392.v1
title: Ecosystem Service Value Transfer Repository

description: Growing demand of resources increases pressure on ecosystem services (ES) and biodiversity. Monetary valuation of ES is frequently seen as a decision-support tool by providing explicit values for unconsidered, non-market goods and services. Despite all criticism benefit transfer, i.e. estimations of values for unsampled areas utilizing results from distant studies, is frequently applied in situations of resource constraints (information, time and money). Here we present the database used for meta-analytic value transfer functions developed in Schmidt et al. 2016. The database contains 194 valuation studies of ES including 839 monetary values for 12 ES. We combined two, peer reviewed databases (Seppelt et al. 2011, De Groot et al. 2012). ES were harmonized to a common, comparable set of ES types using a standardized classification system (McVittie et al. 2008) to avoid semantical differences between varying ES terminologies. Besides the original monetary values we also extracted information about the investigation area and the methodological approach of valuations. Global geo-datasets that were not compiled from valuation studies and used as covariates in Schmidt et al. 2016 are not listed, but are openly available. The sources are mentioned in Schmidt et al. 2016.
DOI: 10.6084/m9.figshare.8083025.v1
title: S1 Table.pdf

description: Supplementary table of RT-qPCR primers
DOI: 10.26180/5df6e2864a658
title: Assemblies

description: FASTA files, times and terminal outputs for the long-read assembler comparison assemblies.
DOI: 10.3535/5ls-vy6-9d2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25429189.v1
title: Quantitative analysis of super-resolution imaging data on late endosome/lysosome heterogeneity.

description: This study develops a multiplexed and quantitative DNA-PAINT super-resolution imaging pipeline to investigate the distribution of late endosomal/lysosomal (LEL) proteins across individual LELs, revealing cell-type specific LEL sub-populations with unique protein compositions, offering insights into organelle heterogeneity at single-organelle resolution.
DOI: 10.3535/aks-k0n-tvh
title: Favositida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j8m-254-98n
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nnd-h6h-3ve
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vsj-bwz-2mb
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.10048031.v1
title: list of 216 species relevant to correct IDs

description: List of 216 species relevant to correct IDs and some useful attributes of each
DOI: 10.6084/m9.figshare.1305758.v1
title: Climate-related variables and geographic distance affect fern species composition across a vegetation gradient in a shrinking hotspot

description: <b><i>Background:</i></b> The Atlantic Forest biome is a top hotspot for conservation priorities, but the variations in fern species composition and the factors driving these are still poorly known. The vegetation gradient found in the state of Santa Catarina, southern Brazil, constitutes an interesting environmental model for examining such patterns.<b><i>Aims:</i></b> We analysed the variation in fern species composition across a vegetation gradient in the southern Atlantic Forest and the variables that might influence it.<b><i>Methods:</i></b> We applied cluster analysis (TWINSPAN and WPGMA), ordination (DCA), regression (OLS and GWR) and variance partitioning to species occurrence, environmental and spatial data in 40 sample units (50 × 50 km<sup>2</sup>), using metadata.<b><i>Results:</i></b> Bioclimatic variables, mainly those related to humidity (water being an essential medium for fern reproduction), and geographic distance were related to variation in fern species composition. Dispersal constraints, probably related to neutral processes, could be evoked to explain the significance of the geographic distance. Overall, a great deal of uncertainty remained with regard to the determinants of floristic composition.<b><i>Conclusions:</i></b> Our study emphasises, for the first time in the Atlantic Forest, a significant role of environmental determinism and dispersal constraints on the variation of fern species composition.
DOI: 10.3535/c9e-t06-tcc
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zhm-hrg-8lw
title: Favositida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19640694.v1
title: Financial logistics model calculations.xls

description: This is a draft of data calculation for the financial logistics models based on systematic approach improving management solutions
DOI: 10.6084/m9.figshare.28418309.v3
title: Histone Modification ChromHMM Data of Mulinia lateralis

description: <br><i>Mulinia lateralis</i>; CUT&Tag; Histone modifications; Epigenetic regulations; Embryonic development
DOI: 10.3535/1e5-kt5-skh
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jn0-8g2-9bp
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12926168.v1
title: Additional file 12 of Genome Wide Analysis of the Transcriptional Profiles in Different Regions of the Developing Rice Grains

description: Additional file 12: Table S6. Expression level of transporter families in each tissue and grain development stages.
DOI: 10.6084/m9.figshare.22259512.v1
title: Quality Assessment Table

description: The table contains data from the application of the grey literature quality assessment criteria.
DOI: 10.6084/m9.figshare.27854116.v5
title: Morphological profiles of U-2 OS cells with cDNA-mediated overexpression

description: Morphological profiles of U-2 OS cells perturbed with perturbations of cDNA-mediated overexpression. This is a re-processed version of data published in:<br>Rohban, M. H., Singh, S., Wu, X., Berthet, J. B., Bray, M.-A., Shrestha, Y., Varelas, X., Boehm, J. S., & Carpenter, A. E. (2017). Systematic morphological profiling of human gene and allele function via Cell Painting. <i>eLife</i>, <i>6</i>, e24060. https://doi.org/10/ghkrp7<br>The data provided here has been reprocessed by combining data from the provided sqlite databases and csv files into a <code>h5ad</code> AnnData file, which can be read in with the AnnData Python package (documentation available here).Morphological profiles are present in the AnnData's <code>X</code> slot, other features that do not quantify a single cell's morphology directly are placed in <code>obsm</code>.Two versions of the data are available: the full data and a subsample in which only two DMSO wells and two C-EBP alpha wells were kept.Additionally, image-level data that can be used for quality control is provided, also as AnnData file.Lastly, for unit-testing, a small <code>csv</code> file is provided in the style of CellProfiler data exports. This file only contains data on four single-cells and is thus not meant for analysis purposes.The processing was performed by Jesko Wagner who claims no authorship of the data. The original data is distributed under CC0, which applies to this redistribution too.
DOI: 10.6084/m9.figshare.3565164.v1
title: Appendix B. Constraints-on-the-functions and the scaling parameter.

description: Constraints-on-the-functions and the scaling parameter.
DOI: 10.3535/q0g-46f-sc0
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22269700.v1
title: DF20_DF19_cumulated_Echo_Intentensities.xlsx

description: Here the cumulated echo intensities for each range gate of DF19 & DF20 can be found.
DOI: 10.6084/m9.figshare.24972021.v1
title: 20092023 dataset.sav

description: Both laparoscopic pectopexy (LPP) and vaginal sacrospinous fixation (VSSF) provide significant improvement of all symptoms in patients with pelvic organ prolapse (POP). LPP is a safe and easy-to-learn minimally invasive surgical technique for POP reconstruction.
DOI: 10.3535/n8z-8w2-8yj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ycs-gat-z88
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kvh-npf-szd
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kyy-k12-v61
title: Halysitida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qlf-lrs-fz2
title: Favositida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vk0-4y4-bca
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1591190.v1
title: Effects of Soil Temperature and Density on Goldenrod Growth in the Stong Pond Grasslands at York University

description: On Monday October 19th 2015, at approximately 3:30pm to 5:00 pm an experiment including 25 grassland plots around Stong Pond at York University were examined to collect data on soil temperature, density, goldenrod plant number and the number of branches. The weather that day was slightly windy, at a temperature of 16 degrees Celsius. The goal of the team was to assess the effects of the soil temperature and the density on goldenrods at York University. A one by one-meter quadrat was placed around various grassland plots to determine what characteristics would favour plant growth. The measurement started off at the edge of the pond, and moved up toward the road. Each quadrat was placed approximately three large steps upwards, from the last. Density was measured by eye, and estimated to a percentage. The number of individual plants and braches were counted individually by experimenters. The thermometer was placed in the middle of each quadrat and the reading was taken after all the results were noted, leaving it more time to adjust to the correct temperature. The only tools used during the experiment was the quadrat and the soil thermometer. No goldenrods that touched the outside of the quadrat was included in the experiment, only the plants within the quadrat was used in the experiment. This experiment was replicated once more the following week on Monday October 26th 2015, when the weather was cooler at 10 degrees Celsius. The second experiment was an exact copy of the first experiment, where the experimenters measured density, soil temperature, individual plant and branch number, starting from the edge of Stong Pond and finishing off at the opposite edge of the grasslands, near the roads. This experiment was done with the assistance of lab members Danika Gordon, Karen Lin, Israt Hossain and Raman Singh.
DOI: 10.3535/cw6-2kf-n1a
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j10-mn4-2rc
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dlm-pt6-cnb
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mjz-mxf-2a2
title: Mesofavosites

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kgz-8h6-c9h
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x5x-s2w-wk1
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.2068284.v1
title: PM7-MD trajectories for B-doped graphene

description: MOLECULAR TRAJECTORIES forBoron Doping of Graphene – Pushing the Limit<br>Boron-doped derivatives of graphene are intensely investigated due to their electronic and catalytic properties. The maximum experimentally observed concentration of boron atoms in graphite amounts to 2.35% at 2350 K. Employing quantum chemistry coupled with molecular dynamics, we identify the theoretical doping limit for the single-layer graphene at different temperatures, demonstrating that it is possible to achieve much higher boron doping concentrations. According to the computations, 33.3 mol% of boron does not significantly undermine thermal stability, whereas 50 mol% of boron results in critical backbone deformations. Even though boron is less electro-negative than carbon, it tends to act as an electron acceptor in the vicinity of C-B bonds. The dipole moment of B-doped graphene depends strongly on the distribution of dopant atoms within the sheet. Compared with N-doped graphene, the dopant-dopant bonds are less destructive in the present system. The reported results motivate efforts to synthesize highly B-doped graphene for semiconductor and catalytic applications. The theoretical predictions can be validated through direct chemical synthesis.<br><br>The visualized molecular trajectories represent the last 20ps of the thermal motion in every system. The file names are self-explanatory. 1B_per_ring - one boron atom per the hexagonal ring.3B_per_ring - three boron atoms per the hexagonal ring.B-B-B_chains - boron-boron covalent bonds within B-doped graphene.
DOI: 10.3535/dn7-rvf-dvf
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kjy-68j-p8v
title: Favositida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fby-pxx-fcc
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xdg-dy0-92z
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.9911759.v1
title: Dataset 5.STL

description: bottom part of mould to make a spherical tumor
DOI: 10.17632/wtfxvfrf8s
title: Entry Cost, Fixed Cost, and Markup: Theory and Evidence from the Impact of Corruption on Prices

description: This is the data file for the paper "Entry Cost, Fixed Cost, and Markup: Theory and Evidence from the Impact of Corruption on Prices" published at Economic Modelling.
DOI: 10.3535/bdj-p5w-qmv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y4x-nfy-73v
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5866785.v2
title: Hur gör du din forskning allmänt tillgänglig (open access)? Gratis och lagligt.

description: Den har infographic visar hur man uppnår 100% open access, gratis och lagligt.<br><br>Svensk översättning av "How to make your research open access? For free and legally" (Matthias & Tennant 2017).<br>Original by Lisa and Jon (CC BY 4.0), Swedish translations by Lachlan Fetterplace. <br><br>Reference:Matthias, Lisa; Tennant, Jon (2017): How to make your research open access? For free and legally.. figshare.)<br><br>
DOI: 10.3535/2mk-6yj-wfs
title: †Mesotrypa expressa Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qw0-cj1-s7w
title: Anoigmaichnus bretti

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.4121/14242199.v1
title: Data set of study 2 of the paper: 'Why general moral values cannot predict moral behavior in real life'

description: This is the dataset underlies study 2 of the paper: 'Why general moral values cannot predict moral behavior in real life' (still in progress)<br>In this study we have measured people's general moral values and people's compliance with the Corona measures during the first 'intelligent lockdown' March-May 2020 through an internet questionnaire.<br>To measure people's general moral values we used items from the Morality as Cooperation Questionnaire. Compliance with corona behavior was operationalized by using items from a national survey measuring compliance rates with the proclaimed measures conducted by the National Institute of Public Health (RIVM) (www.rivm.nl). <br>For specific info on the data and conducted analyses see README file<br><br>
DOI: 10.3535/hhl-50n-jeq
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rgp-1az-yt2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23667075.v1
title: Dataset of Children Walking Pendular and Elastic Mechanism: Obese vs. Non-Obese

description: Dataset of mechanical and spatiotemporal variables of walking children (obese vs. non-obese) in the speeds: 1, 2, 3, 4, and 5 km/h.
DOI: 10.6084/m9.figshare.7419737.v1
title: Damage index analysis of prefabricated segmental bridge columns under cyclic loading

description: Abstract The damage index is usually applied to evaluate the damage states of bridge structures, which is the basis of structural fragility study. The present study investigates the seismic damage index of the prefabricated segmental bridge columns (PSBC) under cyclic loading by theoretical and numerical analysis. Based on the previous pseudo-static experiments, different damage states characteristics of the monolithic cast-in-place bridge columns (MCBC) and the PSBC are discussed and analyzed to propose the limit-state capacities for each damage state of the PSBC. The limit-state capacities include four parameters: compressive strain of concrete, the tensile strain of steel, the prestress level and the residual displacement. Two finite element models of the PSBC are developed by OpenSees to carry on numerical analysis. Using the numerical results, the damage indexes for the PSBCs are obtained based on the limit-state capacities obtained above. The results indicate that the numerical results show good agreement with the experimental results of the bridge columns. The damage index formula of the PSBC, derived in this study, is reasonable and can be further applied. The maximum error between the proposed damage index and that obtained in the verified case is 20.3%. The proposed method in this paper for developing the damage index of the PSBC can be used in the seismic vulnerability analysis assessment of the bridge structures with prefabricated segmental columns.
DOI: 10.6084/m9.figshare.9943742.v1
title: Strain Metadata

description: Metadata including CC, agr type, MSSA/MRSA as well as GWAS results. These data were used for extreme gradient boosting, phylogenetic regression, and ancestral reconstruction<br>
DOI: 10.15468/dl.r8m549
title: Occurrence Download

description: A dataset containing 364746 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is Asia",
 "Country is one of (India, Bhutan, Nepal)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 364746 records from 691 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009710-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/s1n-756-dkm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w51-r90-63n
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.