cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15479/at:ista:14472
title: Stress granules plug and stabilize damaged endolysosomal membranes

description: Data related to the following paper: "Stress granules plug and stabilize damaged endolysosomal membranes" (https://doi.org/10.1038/s41586-023-06726-w) Abstract: Endomembrane damage represents a form of stress that is detrimental for eukaryotic cells. To cope with this threat, cells possess mechanisms that repair the damage and restore cellular homeostasis. Endomembrane damage also results in organelle instability and the mechanisms by which cells stabilize damaged endomembranes to enable membrane repair remains unknown. In this work we use a minimal coarse-grained molecular dynamics system to explore how lipid vesicles undergoing poration in a protein-rich medium can be plugged and stabilised by condensate formation. The solution of proteins in and out of the vesicle is described by beads dispersed in implicit solvent. The membrane is described as a one-bead-thick fluid elastic layer of mechanical properties that mimic biological membranes. We tune the interactions between solution beads in the different compartments to capture the differences between the cytoplasmic and endosomal protein solutions and explore how the system responds to different degrees of membrane poration. We find that, in the right interaction regime, condensates form rapidly at the damage site upon solution mixing and act as a plug that prevents futher mixing and destabilisation of the vesicle. Further, when the condensate can interact with the membrane (wetting interactions) we find that it mediates pore sealing and membrane repair. This research is part of the work published in "Stress granules plug and stabilize damaged endolysosomal membranes", Bussi et al, Nature, 2023 - 10.1038/s41586-023-06726-w.
DOI: 10.6084/m9.figshare.23668269.v1
title: <strong>Unravelling the role of oceanographic connectivity in intra-specific diversity of marine forests at global scale</strong>

description: <br>Table S6: Estimates of oceanographic connectivity between marine forest populations. Species, genetic marker (Marker), genetic differentiation index (Diff.Index), dataset speciality (Spec), hexagon ID of “from” sampling site (Site.From), longitude of “from” sampling site centroid (Site.from.Lon), latitude of “from” sampling site centroid (Site.from.Lat), hexagon ID of “to” sampling site (Site.From), longitude of “to” sampling site centroid (Site.from.Lon), latitude of “to” sampling site centroid (Site.from.Lat), longitude of “from” sampling population (Sample.from.Lon), latitude of “from” sampling population (Sample.from.Lat), longitude of “to” sampling population (Sample.to.Lon), latitude of “to” sampling population (Sample.to.Lat), genetic differentiation (Gen.Diff), oceanographic connectivity of probability (Con.Prob), distance-transformed oceanographic connectivity of probability (Con.Dist), oceanographic connectivity of probability using a fixed PD of. 7.43 d (Con.Prob.Fixed), distance-transformed oceanographic connectivity of probability using a fixed PD of. 7.43 d (Con.Dist.Fixed), harmonic centrality of “from” sampling site (HC.From), harmonic centrality of “to” sampling site (HC.to), number of stepping-stones (Step.Stones), number of stepping-stones using a fixed PD of. 7.43 d (Step.Stones.Fixed) are reported.<br>Figure S7: Connectivity networks and fit between predicted and observed genetic differentiation for each dataset. Panel A depicts the network’ relative probability of oceanographic connectivity between sampled populations. Note that multi-generations connections are depicted, and not stepping-stone pathways. Panel B displays the predicted genetic differentiation with CCM against the observed genetic differentiation. Dotted black lines indicate the linear regression trend and blue shading represents the corresponding 95 % confidence interval.Figure S8: Hexagons implementation of the biophysical model. Each hexagons as an edge length of 8.45 km. Within this global coastline representation, we selected for the purpose of our study hexagons that overlaid the global marine forest distribution, totalling 16,489 hexagons. Geo-referenced data is available as a shapefile. GitHub_Data: Data to generate results, figures and supplementary information throught the R code avalaible in the GitHub repository (https://github.com/TerenceLegrand/connectivity_of_marine_forests)
DOI: 10.6084/m9.figshare.24459265
title: EIS Data 2021

description: The data presented herein are extracted from the European Innovation Scoreboard (EIS) 2021 Database, which is publicly accessible at the following URL: https://ec.europa.eu/research-and-innovation/en/statistics/performance-indicators/european-innovation-scoreboard/eisDocumentation pertaining to the dataset is accessible via the following URL: https://research-and-innovation.ec.europa.eu/statistics/performance-indicators/european-innovation-scoreboard_enThe dataset encompasses the year 2021 and focuses on European Union countries, specifically addressing the following indicators: 1.1.2, 1.1.3, 2.2.1, 3.2.1, 3.3.1, 4.2.3.
DOI: 10.6084/m9.figshare.24459265.v1
title: EIS Data 2021

description: The data presented herein are extracted from the European Innovation Scoreboard (EIS) 2021 Database, which is publicly accessible at the following URL: https://ec.europa.eu/research-and-innovation/en/statistics/performance-indicators/european-innovation-scoreboard/eisDocumentation pertaining to the dataset is accessible via the following URL: https://research-and-innovation.ec.europa.eu/statistics/performance-indicators/european-innovation-scoreboard_enThe dataset encompasses the year 2021 and focuses on European Union countries, specifically addressing the following indicators: 1.1.2, 1.1.3, 2.2.1, 3.2.1, 3.3.1, 4.2.3.
DOI: 10.5258/soton/d2832
title: Dataset supporting the University of Southampton Doctoral thesis "Improving cochlear implant listening using vibrotactile stimulation"

description: This dataset is supporting the University of Southampton Doctoral thesis "Improving cochlear implant listening using vibrotactile stimulation". This dataset contains two Excel files: Experiment_1.xlsx Experiment_2.xlsx Experiment_1.xlsx contains the data presented in Chapter 4. The "All_Data" sheet contains speech reception thresholds (SRT) for each participant, including training and testing sessions, across all conditions. It also includes the condition order. The "Demographics" sheet includes demographic details like age, handedness, gender, and vibrotactile thresholds at the index fingers (right and left) tested at 125 Hz and 31.5 Hz. The "Hearing_Thresholds" sheet includes pure tone audiometry thresholds for right and left ears per participant. Experiment_2.xlsx contains Chapter 5 data. The "All_Data" sheet has SRTs per participant for testing sessions across all conditions. It also shows condition order. The "Tactile_Thresholds" sheet has vibrotactile thresholds at the index fingers (right and left) tested at 125 Hz and 31.5 Hz per participant. The "PTA" sheet has pure tone audiometry thresholds for right and left ears for each participant. The "Demographics and Questionnaire" sheet has demographics like age, handedness, gender, and questionnaire responses on speech benefit with vibration and comfort for each vibration site. Suggested placement responses are also included. The "Gain_values and distance" sheet has vibrotactile thresholds for each body site, measured in dB as shown on the audiometer which was used to control shaker voltage. The experimental protocol was approved by the University of Southampton Faculty of Engineering and Physical Sciences Ethics Committee (ERGO ID: 61502). All research was performed in accordance with the relevant guidelines and regulations.
DOI: 10.5281/zenodo.10054079
title: Database of measurements for damage detection of T-type timber structural joint by Coaxial Correlation Method in 6-D space

description: This database includes series of measurements of the structure's response taken in six-dimensional space using two 6D sensors, coaxially positioned on either side of the investigated joint between two timber beams connected at an angle of 90⁰. Presented data related to seven different states of joints, five load levels, and two type of input signal (short impulse and sweep signal with duration 0.5 seconds). In the "Read_me_first.pdf" is described the experiment, the format of .csv files names and files' structure.
DOI: 10.5281/zenodo.10054078
title: Database of measurements for damage detection of T-type timber structural joint by Coaxial Correlation Method in 6-D space

description: This database includes series of measurements of the structure's response taken in six-dimensional space using two 6D sensors, coaxially positioned on either side of the investigated joint between two timber beams connected at an angle of 90⁰. Presented data related to seven different states of joints, five load levels, and two type of input signal (short impulse and sweep signal with duration 0.5 seconds). In the "Read_me_first.pdf" is described the experiment, the format of .csv files names and files' structure.
DOI: 10.5281/zenodo.10057548
title: ALISHER NAVOI ABOUT THE DUTIES AND RESPONSIBILITIES OF PARENTS
DOI: 10.5281/zenodo.10026887
title: RADPRINTS

description: Radio fingerprint files from 'Fingerprint localisation for fine-scale wildlife tracking using automated radio telemetry systems.' This dataset contains three files:
fingerprint_detections.csv - RSS values from tags at 532 fingerprint points. Time (s) is relative to the start of collecting fingerprint data at each point.
receiver_coordinates.csv - Coordinates (x,y) of receivers. Coordinates are in CRS 28992. 
fingerprintcoordinates.csv - Coordinates of the fingerprint points from 'fingerprint_detections.csv.' Coordinates are in CRS 28992.
DOI: 10.5281/zenodo.10057547
title: ALISHER NAVOI ABOUT THE DUTIES AND RESPONSIBILITIES OF PARENTS
DOI: 10.5281/zenodo.10026886
title: RADPRINTS

description: Radio fingerprint files from 'Fingerprint localisation for fine-scale wildlife tracking using automated radio telemetry systems.' This dataset contains three files:
fingerprint_detections.csv - RSS values from tags at 532 fingerprint points. Time (s) is relative to the start of collecting fingerprint data at each point.
receiver_coordinates.csv - Coordinates (x,y) of receivers. Coordinates are in CRS 28992. 
fingerprintcoordinates.csv - Coordinates of the fingerprint points from 'fingerprint_detections.csv.' Coordinates are in CRS 28992.
DOI: 10.5281/zenodo.10050293
title: MuVi-Sync Dataset (original video only)
DOI: 10.5281/zenodo.10050294
title: MuVi-Sync Dataset (original video only)
DOI: 10.5281/zenodo.10057289
title: Research data supporting: "Self-assembly of cyclic peptide monolayers by hydrophobic supramolecular hinges"

description: This repository contains the set of modelling data shown in the paper: "Self-assembly of cyclic peptide monolayers by hydrophobic supramolecular hinges", published on Chemical Science (DOI: 10.1039/d3sc03930g)
DOI: 10.5281/zenodo.10057290
title: Research data supporting: "Self-assembly of cyclic peptide monolayers by hydrophobic supramolecular hinges"

description: This repository contains the set of modelling data shown in the paper: "Self-assembly of cyclic peptide monolayers by hydrophobic supramolecular hinges", published on Chemical Science (DOI: 10.1039/d3sc03930g)
DOI: 10.5281/zenodo.8377955
title: Surface chemistry dictates the enhancement of luminescence and stability of InP QDs upon c-ALD ZnO hybrid shell growth

description: Indium phosphide quantum dots (InP QDs) are a promising example of RoHS (Restriction of Hazardous Substances) compliant light-emitting materials. However, they suffer from low quantum yield and instability upon processing under ambient conditions. Colloidal atomic layer deposition (c-ALD) has been recently proposed as a methodology to grow hybrid materials including QDs and organic/inorganic oxide shells, which possess new functions compared to the as-synthesized QDs. Here, we demonstrate that ZnO shells can be grown on InP QDs obtained via two synthetic routes, which are the classical sylilphosphine-based and the more recently developed aminophosphine-based one. We find that the ZnO shell increases the photoluminescence emission significantly only in the case of aminophosphine-based InP QDs. We rationalize this result with the different chemistry involved in the nucleation step of the shell and the resulting surface defect passivation. Furthermore, we demonstrate that the ZnO shell prevents degradation of the InP QD suspension under ambient conditions by avoiding moisture induced ligand displacement from their surface. Overall, this study proposes c-ALD as a methodology for the synthesis of alternative InP-based core@shell QDs and provides insight into the surface chemistry that results in both enhanced photoluminescence and stability required for application in optoelectronic devise and bio-imaging.
DOI: 10.5281/zenodo.8377954
title: Surface chemistry dictates the enhancement of luminescence and stability of InP QDs upon c-ALD ZnO hybrid shell growth

description: Indium phosphide quantum dots (InP QDs) are a promising example of RoHS (Restriction of Hazardous Substances) compliant light-emitting materials. However, they suffer from low quantum yield and instability upon processing under ambient conditions. Colloidal atomic layer deposition (c-ALD) has been recently proposed as a methodology to grow hybrid materials including QDs and organic/inorganic oxide shells, which possess new functions compared to the as-synthesized QDs. Here, we demonstrate that ZnO shells can be grown on InP QDs obtained via two synthetic routes, which are the classical sylilphosphine-based and the more recently developed aminophosphine-based one. We find that the ZnO shell increases the photoluminescence emission significantly only in the case of aminophosphine-based InP QDs. We rationalize this result with the different chemistry involved in the nucleation step of the shell and the resulting surface defect passivation. Furthermore, we demonstrate that the ZnO shell prevents degradation of the InP QD suspension under ambient conditions by avoiding moisture induced ligand displacement from their surface. Overall, this study proposes c-ALD as a methodology for the synthesis of alternative InP-based core@shell QDs and provides insight into the surface chemistry that results in both enhanced photoluminescence and stability required for application in optoelectronic devise and bio-imaging.
DOI: 10.6084/m9.figshare.24459865
title: Interviews on municipal efforts to survey uninhabited domestic buildings in Sweden

description: This data was gathered between October 2022 and April 2023, within a PhD research project aiming to gather new information about uninhabited domestic buildings in Sweden, study how they are renovated and heated by new owners, and discuss possible ways to stimulate future utilization in sustainable, energy-efficient and culturally attentive ways. The first part of the project, for which the present data was collected, focused on gathering information about built characteristics and potentials related to the uninhabited domestic building stock, via experiences from municipal officials having surveyed such buildings. This method was employed as an alternative to raw data access and analysis, which was unattainable due to GDPR restrictions.Data was gathered through semi-structured, explorative interviews with 21 municipal officials and one private individual, conducted and recorded online in Swedish via Zoom and Teams. The majority of interviews were conducted one-on-one, except for three occasions where cooperating officials participated together. Interviewees and municipalities have been anonymized. Names and specific geographical locations have been removed. Each document contains one transcribed interview in Swedish.
DOI: 10.6084/m9.figshare.24459865.v1
title: Interviews on municipal efforts to survey uninhabited domestic buildings in Sweden

description: This data was gathered between October 2022 and April 2023, within the research project "Renovation Practices in Abandoned Homes – Improved conditions for careful energy efficiency measures<i>." </i>The aim of this project is to gather new information about the uninhabited domestic building stock in Sweden, study how they are renovated and heated by new owners, and discuss possible ways to stimulate future utilization in sustainable, energy-efficient and culturally attentive ways. The first part of the project, for which the present data was collected, focused on gathering information about built characteristics and potentials related to the uninhabited domestic building stock, via experiences from municipal officials having surveyed such buildings. This method was employed as an alternative to raw data access and analysis, which was unattainable due to GDPR restrictions.Data was gathered through semi-structured, explorative interviews with 21 municipal officials and one private individual, conducted and recorded online in Swedish via Zoom and Teams. The majority of interviews were conducted one-on-one, except for three occasions where cooperating officials participated together. Interviewees and municipalities have been anonymized. Names and specific geographical locations have been removed. Each document contains one transcribed interview in Swedish.
DOI: 10.6084/m9.figshare.24459865.v2
title: Interviews on municipal efforts to survey uninhabited domestic buildings in Sweden

description: This data was gathered between October 2022 and April 2023, within a PhD research project aiming to gather new information about uninhabited domestic buildings in Sweden, study how they are renovated and heated by new owners, and discuss possible ways to stimulate future utilization in sustainable, energy-efficient and culturally attentive ways. The first part of the project, for which the present data was collected, focused on gathering information about built characteristics and potentials related to the uninhabited domestic building stock, via experiences from municipal officials having surveyed such buildings. This method was employed as an alternative to raw data access and analysis, which was unattainable due to GDPR restrictions.Data was gathered through semi-structured, explorative interviews with 21 municipal officials and one private individual, conducted and recorded online in Swedish via Zoom and Teams. The majority of interviews were conducted one-on-one, except for three occasions where cooperating officials participated together. Interviewees and municipalities have been anonymized. Names and specific geographical locations have been removed. Each document contains one transcribed interview in Swedish.
DOI: 10.5281/zenodo.10057460
title: W4RES Needs, perceptions and challenges in RHC landscape for eight regions dataset1 2021/03/30

description: The main idea behind the survey design was to obtain a clear identification of key factors correlated to the market uptake of RHC solutions through a gender disaggregated analytical approach in eight countries (Greece, Italy, Germany, Belgium, Denmark, Slovakia, Norway, and Bulgaria). To better address different perspectives across the quadruple helix, the survey has been designed to include questions that are specifically targeted to each group. The survey has been divided into broad sections covering the most relevant topics to be addressed.
As for the interviews, to analyze needs, perceptions and challenges of market actors and stakeholders through a gender lens, the following research questions were defined:
I. Identify needs, perceptions and challenges of market actors and stakeholders across the quadruple helix in the 8 regions regarding the uptake of RHC solutions.
II. Identify needs, perceptions and challenges of market actors and stakeholders across the quadruple helix in the 8 regions regarding the role of women in RHC.
The survey was coded on the EUSurvey software and translated in the following languages: English, German, French, Bulgarian, Danish, Greek, Italian, Dutch and Slovak. As advised by ECWT, the partner based in Norway, it was agreed that disseminating the survey in English to the potential respondents operating in Norway was an appropriate strategy and that a translation in Norwegian was not necessary.
DOI: 10.5522/04/23684637
title: River Thames eDNA temporal metabarcoding study: Results from data filtering

description: Sequencing results from filtering raw sequence data from environmental DNA metabarcoding samples of River Thames fish communities. <br> Samples were collected from two sites during 2019 over 12 months from the Thames Basin, London, U.K., sampling a minimum of every week. Site 1. River Lee (freshwater) and site 2. Richmond Lock, Thames River (tidal). Samples were amplified with the primer set MiFish-U. <br> The file is an Excel workbook of the sequencing results from filtering the raw sequence data (file "Temporal_eDNA_GC-EC-9225.tar.gz") through the pipeline DADA2: providing ASV IDs, sample and ASV table with readcounts, and fish names. <br> For further information on filtering settings see the published paper. <br> Hallam J, Clare EL, Jones JI, Day JJ. (2023) Fine-scale environmental DNA metabarcoding provides rapid and effective monitoring of fish community dynamics. <em>Environmental DNA. </em>DOI:10.1002/edn3.486<em><br> </em>
DOI: 10.5522/04/23684637.v2
title: River Thames eDNA temporal metabarcoding study: Results from data filtering

description: Sequencing results from filtering raw sequence data from environmental DNA metabarcoding samples of River Thames fish communities. <br> Samples were collected from two sites during 2019 over 12 months from the Thames Basin, London, U.K., sampling a minimum of every week. Site 1. River Lee (freshwater) and site 2. Richmond Lock, Thames River (tidal). Samples were amplified with the primer set MiFish-U. <br> The file is an Excel workbook of the sequencing results from filtering the raw sequence data (file "Temporal_eDNA_GC-EC-9225.tar.gz") through the pipeline DADA2: providing ASV IDs, sample and ASV table with readcounts, and fish names. <br> For further information on filtering settings see the published paper. <br> Hallam J, Clare EL, Jones JI, Day JJ. (2023) Fine-scale environmental DNA metabarcoding provides rapid and effective monitoring of fish community dynamics. <em>Environmental DNA. </em>DOI:10.1002/edn3.486<em><br> </em>
DOI: 10.5281/zenodo.10057459
title: W4RES Needs, perceptions and challenges in RHC landscape for eight regions dataset1 2021/03/30

description: The main idea behind the survey design was to obtain a clear identification of key factors correlated to the market uptake of RHC solutions through a gender disaggregated analytical approach in eight countries (Greece, Italy, Germany, Belgium, Denmark, Slovakia, Norway, and Bulgaria). To better address different perspectives across the quadruple helix, the survey has been designed to include questions that are specifically targeted to each group. The survey has been divided into broad sections covering the most relevant topics to be addressed.
As for the interviews, to analyze needs, perceptions and challenges of market actors and stakeholders through a gender lens, the following research questions were defined:
I. Identify needs, perceptions and challenges of market actors and stakeholders across the quadruple helix in the 8 regions regarding the uptake of RHC solutions.
II. Identify needs, perceptions and challenges of market actors and stakeholders across the quadruple helix in the 8 regions regarding the role of women in RHC.
The survey was coded on the EUSurvey software and translated in the following languages: English, German, French, Bulgarian, Danish, Greek, Italian, Dutch and Slovak. As advised by ECWT, the partner based in Norway, it was agreed that disseminating the survey in English to the potential respondents operating in Norway was an appropriate strategy and that a translation in Norwegian was not necessary.