cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27144364.v2
title: Euclidean Mirrors and Dynamics in Network Time Series

description: Analyzing changes in network evolution is central to statistical network inference. We consider a dynamic network model in which each node has an associated time-varying low-dimensional latent vector of feature data, and connection probabilities are functions of these vectors. Under mild assumptions, the evolution of latent vectors exhibits low-dimensional manifold structure under a suitable distance. This distance can be approximated by a measure of separation between the observed networks themselves, and there exist Euclidean representations for underlying network structure, as characterized by this distance. These Euclidean representations, called Euclidean mirrors, permit the visualization of network dynamics and lead to methods for change point and anomaly detection in networks. We illustrate our methodology with real and synthetic data, and identify change points corresponding to massive shifts in pandemic policies in a communication network of a large organization. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.
DOI: 10.6084/m9.figshare.3543929.v1
title: Appendix B. Species-by-trait matrix.

description: Species-by-trait matrix.
DOI: 10.6084/m9.figshare.7180439.v1
title: WCST data

description: Sleezer & Hayden, 2016Sleezer et al., 2016
DOI: 10.17632/dx39s9wf7k
title: SNPs associated with allergic contact dermatitis to weak antigens, metals, antigens metabolized in skin, and polysensitization

description: Examination of over 1400 single nucleotide polymorphisms to explore association with genes that may be involved in the mechanism of allergic contact dermatitis. We examined four clusters of contact allergens: allergens that are non-or weak sensitizers in the local lymph node assay (propylene glycol, vanillin, eugenol, paraben mix); metals (Ni, Co, Cr, Au); allergens metabolized in the skin (PPDA, corticosteroids); and polysensitization defined as positive patch tests to 3 or more non-cross-reacting allergens. We also looked for SNPs associated with history of childhood flexural dermatitis (atopic dermatitis) and dyshidrotic eczema, both of which are Th2 skewed immune reactions often associated with allergic contact dermatitis. 
We review our findings in "Weak Sensitizers may be Associated with CD80 Polymorphisms-Implications for Systemic Contact Dermatitis" JID Innovations 2025. 
CD80 is expressed on many cells including eosinophils and dendritic cells such as innate lymphoid cells 2 that may facilitate sensitization to antigens that are not processed via conventional dendritic cells in the local lymph node. This innate "trained immunity" may allow ingestion to trigger recall via NKT cells at prior sites of skin contact of the same allergen. Systemic contact dermatitis of the eczematous type (as opposed to the erythema multiforme-type triggered by inhaled potent allergens like poison ivy or epoxy) is usually triggered by ingestion of weak antigens such as foods or food additives and is usually Th2 skewed (Ahuja K, Issa CJ, Nedorost ST, Lio PA. Is Food-Triggered Atopic Dermatitis a Form of Systemic Contact Dermatitis? Clin Rev Allergy Immunol. 2024 Feb;66(1):1-13. doi: 10.1007/s12016-023-08977-x.) 
In contrast, we also found that dyshidrotic eczema, which is also Th2 skewed but often triggered by dietary exposure to metal allergens of moderate potency, is associated with genetic variants in TSLP, suggesting that these allergens are process in the local lymph node leading to antigen specific immunoglobulin. CD80 variants were not associated with history of dyshidrotic eczema.
Systemic contact dermatitis to allergens such as foods or food additives may explain food-triggered atopic dermatitis. The immunology is complex and involves sensitization on chronically inflamed skin, innate and/or adaptive antigen presenting cells, CLA+ cells such Th2 and/or NKT cells, and IL-31.
DOI: 10.17632/pyjkvgjmfz
title: Data-POS-ITS

description: This data contains digital data collected from employees in the electronics industry in Vietnam. This file is organized in a manner conducive to statistical evaluation and theoretical modeling, containing 604 responses related to Perceived Organizational Support (POS), Job Satisfaction (JS), Work-life balance (WLB) and Employee Intention to Stay (ITS).
DOI: 10.17632/yd7bb3shn5
title: Phenotypic heterogeneity and plasticity in colorectal cancer metastasis

description: Raw and processed data from Ogden, Metic et al. 2025

Raw Western blot images (.tif files)
Decontaminated gene expression count matrix and cell metadata of colorectal cancer liver metastases generated in this study. Data is within an anndata object (.h5ad).
DOI: 10.17632/ysnftfyd8p
title: Distinct and interdependent functions of three RING proteins regulate recombination during mammalian meiosis. Ito et al.

description: During meiosis, each pair of homologous chromosomes becomes connected by at least one crossover, as required for accurate segregation, and adjacent crossovers are widely separated thereby limiting total numbers. In coarsening models, this crossover patterning results from nascent recombination sites competing to accrue a limiting pro-crossover RING-domain protein (COR) that diffuses between synapsed chromosomes. Here we delineate the localization dynamics of three mammalian CORs in mouse and determine their interdependencies. RNF212, HEI10 and a new member RNF212B show divergent spatiotemporal dynamics along synapsed chromosomes, including profound differences in spermatocytes and oocytes, that are not easily reconciled by elementary coarsening models. Contrasting mutant phenotypes and genetic requirements indicate that RNF212B, RNF212, and HEI10 play distinct but interdependent functions in regulating meiotic recombination and coordinating the events of meiotic prophase-I by integrating signals from DNA breaks, homolog synapsis, the cell-cycle, and incipient crossover sites.
DOI: 10.6084/m9.figshare.22187764.v1
title: Supplementary Material for: Imaging factors affecting prenatal counselling in orofacial clefts

description: Introduction: we aim to correlate pre-and postnatal data regarding the cleft type and surgical prognostic factors associated to orofacial clefts. Methods: retrospective study concerning all cases of orofacial cleft evaluated prenatally (US+/-MRI) between 2015 and 2020 with available postnatal outcome. We compared prenatal imaging (cleft type and surgical prognostic factors) with postnatal findings. Results: 48 fetuses were included. Median gestational age at first US/MRI examination: 29WG+2D and 31WG+6D respectively. The prenatal diagnosis was in accordance with postnatal findings with regard to the cleft type in 88% of the cases (n=42/48) for US and/or MRI, 84% (n=38/45) for US only and 90% (n=37/41) for MRI only. The nasal septum deviation and nostril collapse were underestimated by prenatal US in 48% (n=12/25) and 44% (n=11/25) of cases respectively (Cohen’s kappa of 0.22 and 0.32 respectively). Pre-and postnatal examinations were in accordance in 75% of cases (n=8) regarding evaluation of anteroposterior maxillary shift in case of unilateral alveolar cleft and in 90% and 80% of cases (n=10) regarding the degree of protrusion/deviation of the premaxillary protrusion in case of bilateral cleft respectively. Conclusion: Prenatal imaging can accurately assess the type of orofacial cleft and evaluate maxillary shift and deviation of the premaxilla. It underestimates the nose deformity.
DOI: 10.6084/m9.figshare.22722925.v2
title: <strong>CAU-APC-SEG</strong>.zip is the training dataset for the paper "<strong>Deep semantic segmentation for plastic-covered greenhouses and plastic-mulched farmlands from VHR remote sensing images</strong>".

description: Agricultural plastic covers (APCs) have been widely utilized around the globe nowadays for improving crop growing conditions hence to increase crop yield and quality. Plastic-covered greenhouses (PCGs) and plastic-mulched farmlands (PMFs) are two major APC categories. Due to the spectral similarity, it remains a challenging task to separate them from each other. <strong>CAU-APC-SEG</strong> of this study is the dataset which contains both PCGs and PMFs from very high resolution (VHR) images.
DOI: 10.6084/m9.figshare.29042522.v1
title: For Test

description: For Test
DOI: 10.6084/m9.figshare.3468431.v1
title: Characterization of protein-conjugating kinetics based on localized surface plasmon resonance of the gold nanoparticle

description: The gold nanoparticle exhibits optical property of localized surface plasmon resonance (LSPR), which dynamically alters as the surface adsorbs new ligands. We carried out a semi-quantitative analysis with the method of multivariate curve resolution, observing that the adsorption of serum albumin on gold nanoparticle was best deciphered as two-mode competitive kinetics. Interestingly, for human serum albumin, the slower mode contributed considerably to the LSPR response of protein-conjugated surfaces, while in the case of bovine serum albumin the faster mode overwhelmed the slower one at high protein concentrations. The kinetic patterns were rationalized with diversity of biomolecular orientations on the nanoparticle surface. The simple but efficient protocol supports semi-quantitative analysis combining UV-vis spectroscopy with chemometrics method for distinguishing conjugation kinetics of different types of proteins on the surface of nanoparticles at nanomolar concentration.
DOI: 10.6084/m9.figshare.6388457.v1
title: Efficacy Evaluation of Fertilizers and Weed Control Practices to Mitigate Wheat Nutrient and Yield Losses

description: ABSTRACT: Low fertilizer use efficiency due to inappropriate weed control practices is one of the main causes of poor wheat yield worldwide. A 2 year field experiment was conducted to study the effects of three fertilizer levels and four weed control practices on fertilizer use efficiency and nutrient uptake by wheat and its associated weeds. Fertilizer levels were F0 (zero fertilizer), F1 (75 kg ha-1 N + 50 kg ha-1 P2O5), and F2 (150 kg ha-1 N + 100 kg ha-1 P2O5) and weed control included W1 (weedy check), W2 (pendimethalin applied at 1,031 g a.i. ha-1), W3 (isoproturon + carfentrazone ethyl applied at 750 g a.i. ha-1) and W4 (manual weed control). Different weed control practices significantly reduced the NPK uptake by weeds and increased NPK uptake by wheat. Maximum uptake of NPK by wheat and minimum uptake by weeds were recorded in W4. Increasing dose of fertilizer increased NPK uptake by both weeds and wheat. However maximum fertilizer use efficiency and grain yield of wheat were achieved when highest dose of fertilizers (F2) was used along with manual weed control method (W4), which was followed by F2 and W3 during both years. We have come to the conclusion that to achieve higher wheat yield by increasing fertilizer doses, farmers should take appropriate weed control measures.
DOI: 10.26181/24311368.v1
title: <b>Divergent Responses of Insectivorous Bats and Flying Insects to Experimental LED Illumination of Different Spectra</b>

description: We conducted a field experiment to investigate the effects of short-term nighttime illumination on nocturnal flying insects and insectivorous bats in previously unlit remnant bushland. We compared these organisms’ responses to three types of light-emitting diode (LED) lights, each with a unique spectral composition (cool white (CW) - λP 457 nm, filtered white (FW) - λP 586 nm, and amber (A) - λP 601 nm), as well as a control (C) group without illumination.
DOI: 10.6084/m9.figshare.28007858.v1
title: Lionfish (<i>Pterois </i>spp.) sonic anatomy

description: A dataset quantifying the lengths and masses of the swimbladder muscles of <i>Pterois volitans</i> lionfish.
DOI: 10.6084/m9.figshare.6783476.v1
title: Unified Consciousness and the Effect of Body Scan Meditation on Happiness

description: Data of the study titled " Unified consciousness and the effect of body scan meditation on happiness"
DOI: 10.6084/m9.figshare.11300978.v1
title: Lower ilium length in anthropoids

description: This dataset reports lower ilium length measurements shown in Figure 2 of "Insights into the lower torso in late Miocene hominoid Oreopithecus bambolii."<br>The comparative anthropoid data in this dataset originally appeared in Hammond and Almecija (2017, Anatomical Record, https://doi.org/10.1002/ar.23545). Authors request that use of this dataset also includes citation to the original work. Values in dataset represent anthropoid lower ilium height from the center of the acetabular fossa to the point where the linea arcuata meets the auricular surface. Acetabulum diameter is the superoinferior dimension. Detailed methodology is described in Hammond and Almecija (2017).
DOI: 10.6084/m9.figshare.20540454.v3
title: MilkyBase database

description:  <em>Supplementary information 1. </em>
<br>
Pacza T. et. al., 2022, MilkyBase, a database of human milk composition as a function of maternal-, infant- and measurement conditions. 
<br>
 The MilkyBase database hosts records on the biochemical composition of human milk as a function of infant and maternal characteristics and conditions of data generation.
DOI: 10.6084/m9.figshare.28270808.v2
title: MD simulations of EXOG and its mutants with ssDNA and ssRNA

description: AbstractSingle-stranded DNA (ssDNA) is an important intermediate generated during various cellular DNA transactions, primarily during long-patch base excision repair. When displaced by DNA polymerase during strand displacement DNA synthesis, ssDNA forms 5′ overhangs (flaps) that are either cleaved by DNA nucleases or protected from degradation upon binding of single-stranded DNA binding proteins (SSB). There are several nucleases implicated in ssDNA flaps removal in human mitochondria, namely endonucleases FEN1 and DNA2 as well as exonuclease MGME1. In this study, we show that another mitochondrial nuclease, EXOG, cleaves DNA flaps in both free and SSB-protected forms. We established that the presence of the Wing domain in EXOG structure provides additional binding site for ssDNA and 5′ flaps irrespective of monovalent salt concentration. Importantly, DNA flap cleavage by EXOG is compatible with the activity of other mitochondrial enzymes involved in DNA replication/repair, e.g., mtSSB, Pol γ and Lig III, as we were able to reconstitute a multistep reaction of DNA synthesis, flap removal and nick ligation. Our findings highlight the versatile role of EXOG in maintaining mitochondrial DNA integrity, adding single-stranded DNA flap removal to the repertoire of its DNA processing activities.MethodsThe dataset is collected through molecular dynamics simulations using GROMACS.
DOI: 10.17632/dv43z9x72t
title: Analysis code and raw data for 'Automatic Etch Pit Density Analysis in Multicrystalline Silicon'

description: "etch_pit_density_analysis.zip" contains the analysis code. See the README.txt for more information. "secco_etched_mc_Si_wafer_image.png" - Optical microscope image, depicting a 2.5cm*1.2cm Secco etched multicrystalline Silicon wafer. Dark spots are etch pits, typically associated with dislocation lines that intersect with the wafer surface. Dark lines are grain boundaries. The leftmost 20% of the wafer have been in contact with the sample carrier during defect etching, explaining the uneven etch result.
DOI: 10.17632/g8fhf7fbds
title: EcoCropsAID: Thailand’s Economic Crops Aerial Image Dataset

description: Thailand’s Economic Crops Aerial Image Dataset (EcoCropsAID)

We introduce the novel Economic Crops Aerial Image Dataset, named the EcoCropsAID dataset. This dataset was collected in Thailand and consists of aerial images of five key economic crops cultivated in different provinces and regions between 2014 and 2018. The dataset was compiled based on data from Agri-Map Online, a tool provided by the Ministry of Agriculture and Cooperatives and the National Electronics and Computer Technology Center (NECTEC). Agri-Map Online is an agricultural mapping system widely used by departments under the Ministry of Agriculture and Cooperatives for agricultural management. It ensures that the agricultural information is accurate and up-to-date. The Google Earth application was subsequently employed to capture aerial images of the selected economic crop areas. The dataset is complex, as the Google Earth program utilizes various remote imaging sensors to capture the aerial images.

The EcoCropsAID dataset includes five categories (rice, sugarcane, cassava, rubber, and longan), containing a total of 5,400 images, with each class comprising approximately 1,000 images. The aerial images were captured at a resolution of 600 × 600 pixels and stored in RGB color format.

The challenges associated with classifying the EcoCropsAID dataset include: 1) the presence of varying image resolutions and colors due to the different remote imaging sensors used, 2) the similarity of patterns among certain classes, such as longan and rubber, and 3) the differences in patterns within the same class, such as cassava and rice.
DOI: 10.17632/vcksnr3rh5
title: Trace element (Be, Zn, Ga, Rb, Nb, Cs, Ta, W) partitioning between mica and Li-rich granitic melt: Experimental approach and implications for W mineralization

description: Data S1 includes typical large W deposits and Li-rich granite-related deposits worldwide. Data S2 includes all LA-ICP-MS analyses for experimental run products. Data S3 includes results of modelling the phase assemblage evolution of Li-rich magmatic systems (P: 1.75 kbar; fO2: NNO buffer) with different initial water contents using Rhyolite-MELTS software. Data S4 includes geochemical data on mica from worldwide deposits.
DOI: 10.17632/m2yx99483t
title: A GIS-based path dataset for an urban commuting route employing multimodal transit networks

description: This dataset contains an example route for urban commuting between PES University and IISc Bangalore. This route comprises multi-modal transit networks, which can be used between the source and destination depending on traffic conditions and commuter preferences. For a more accurate description, GIS data was used to define the routes and surrounding urban areas, as well as their characteristics. The route information is segregated into different layers, saved as shapefiles. Four additional layers for pre-defined routes are identified over the base layer containing information on all paths, streets and roads. The dataset also contains various attributes of the surrounding areas in the form of geotags. The software tools used for the GIS data extraction are QGIS, OpenStreetMaps, and Google Maps. The steps to reproduce this dataset is given below:
 
1. Define source and destination: For this case study, the Source is PES University, Karnataka, India, and the Destination is IISc Bangalore, Karnataka, India.
2. Extract OpenStreetMap(OSM) maps for the region between the source and destination.
3. Import OSM data in QGIS and merge geometries of the same type (points/ lines/ polygons).
4. Use of inbuilt Shortest path (point-to-point) algorithm to generate different routes.
5. Export layers consisting of routes as separate shapefiles.
DOI: 10.17632/vp7jdp79y4
title: Lithosphere temperature models for NW Hungary

description: The dataset contains lithospheric scale thermal models for the Hungarian part the NW Pannonian basin. Models provide past and present-day temperature predictions, considering the transient thermal effects of lithosphere extension and sedimentation associated with the formation of the Pannonian Basin.
Models were built in the Hungarian coordinate system (HD72 / EOV) with a horizontal resolution of ~ 3 km and a vertical resolution of 200 m for the uppermost 5 km and 2.5 km down to 135 km depth. For more detailed description of the methodology and results, we refer to Békési et al., under review.

References:
Békési, E., van Wees, J.-D., Porkoláb, K., Hencz, M., and Berkesi, M.: Modelling transient thermal processes in the lithosphere: application to the NW Pannonian basin, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2024-308, 2024.
Dövényi, P., and Horváth, F., 1988, A Review of Temperature, Thermal Conductivity, and Heat Flow Data for the Pannonian Basin: Chapter 16. doi:https://doi.org/10.1306/M45474C16
Dövényi, P., Horváth, F., Liebe, P., Gálfi, J., and Erki, I., 1983, Geothermal conditions of Hungary: Geophys. Transactions, v. 29/1, p. 3–114.
Hantschel, T., and Kauerauf, A. I., 2009, Fundamentals of basin and petroleum systems modeling, Springer Science & Business Media.
Limberger, J., van Wees, J.-D., Tesauro, M., Smit, J., Bonté, D., Békési, E., Pluymaekers, M., Struijk, M., Vrijlandt, M., Beekman, F., and Cloetingh, S., 2018, Refining the thermal structure of the European lithosphere by inversion of subsurface temperature data: Global and Planetary Change, v. 171, p. 18-47. doi:https://doi.org/10.1016/j.gloplacha.2018.07.009
OGRe, 2020, Geothermals Information System, MBFSZ, https://map.mbfsz.gov.hu/ogre/.
DOI: 10.17632/z78ghz96bn
title: fragmented rocks by blasting

description: 226 images of fragmented rocks from various blasts, carried out at Gole-Gohar iron ore mine, Iran were used to prepare a data set. The rock type and number of images for each type are presented in Table Number of Images Rock Type 75 Hematite 4 Hematite and magnetite 56 Magnetite 13 Amphibole 52 Quartz schist 18 Gneiss 8 Sand and gravel
DOI: 10.6084/m9.figshare.12103629.v1
title: Caltech-256

description: Dataset Source:https://authors.library.caltech.edu/7694/<br>
DOI: 10.6084/m9.figshare.13201169.v1
title: Wrinkles-All-Raw-Data.zip

description: Raw and processed data from an experiment to determine why our fingers go wrinkly in the bath.<br>Wrinkles-All-Raw-Data.zip - all raw (and processed) data files, included excluded data.wrAnalyse.m - Matlab script to analyse data.Wrinkles-README.txt - quick start guide to the data<br>
DOI: 10.6084/m9.figshare.21946337.v1
title: chip.bam.bai

description: example .bam.bai format file from ChIP-seq data
DOI: 10.6084/m9.figshare.23514234.v2
title: Data

description: Matlab data files of results.
DOI: 10.6084/m9.figshare.24311632.v1
title: Raw geospatial data

description: This data describes the spatial raw data of the species (including mammals, birds, reptiles, and amphibians) occurring in Tanzania. It also shows the localization of the different Nature Forest Reserves in Tanzania. The results came from the potential presence data from IUCN, DRYAD, and Birdlife, and were afterward transferred to shapes files. <br>