cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48597/c3b9-n3kp
title: Measurement of Precipitation_amount at Lough Navar

description: Measurement of Precipitation_amount at Lough Navar
DOI: 10.48597/d3jb-rps9
title: Measurement of Copper at Harwell

description: Measurement of Copper at Harwell
DOI: 10.48597/d5x6-ac9e
title: Measurement of Conductivity at Strath Vaich Dam

description: Measurement of Conductivity at Strath Vaich Dam
DOI: 10.48597/da7j-9n74
title: Measurement of Phenanthrene at Auchencorth Moss

description: Measurement of Phenanthrene at Auchencorth Moss
DOI: 10.48597/dc7e-y6gf
title: Measurement of Cobalt at Harwell

description: Measurement of Cobalt at Harwell
DOI: 10.48597/depw-u96e
title: Measurement of Ammonium at Eskdalemuir

description: Measurement of Ammonium at Eskdalemuir
DOI: 10.48597/dn39-tak2
title: Measurement of Precipitation_amount at High Muffles

description: Measurement of Precipitation_amount at High Muffles
DOI: 10.48597/dn89-nfpm
title: Measurement of Sulphate_total at Yarner Wood

description: Measurement of Sulphate_total at Yarner Wood
DOI: 10.48597/dnun-qsxp
title: Measurement of Fluorene at Auchencorth Moss

description: Measurement of Fluorene at Auchencorth Moss
DOI: 10.48597/dtu9-xhr9
title: Measurement of Ammonium at Auchencorth Moss

description: Measurement of Ammonium at Auchencorth Moss
DOI: 10.48597/ebpn-frqz
title: Measurement of Nitrate at Lough Navar

description: Measurement of Nitrate at Lough Navar
DOI: 10.48597/ewvq-8bjg
title: Measurement of Potassium at Strath Vaich Dam

description: Measurement of Potassium at Strath Vaich Dam
DOI: 10.48597/exyx-zcxm
title: Measurement of Magnesium at Harwell

description: Measurement of Magnesium at Harwell
DOI: 10.48597/fn7f-5sdd
title: Measurement of Sodium at High Muffles

description: Measurement of Sodium at High Muffles
DOI: 10.6084/m9.figshare.19915383
title: Additional file 1 of SOCS7/HuR/FOXM1 signaling axis inhibited high-grade serous ovarian carcinoma progression

description: Additional file 1: Supplementary Table 1. HuR/ELAV-like Protein 1 was identified to interact with SOCS7 via liquid chromatography/mass spectrometry (LC/MS).
DOI: 10.48597/fnmk-yqr7
title: Measurement of Lead at Harwell

description: Measurement of Lead at Harwell
DOI: 10.48597/fv4r-sazn
title: Measurement of Sodium at Yarner Wood

description: Measurement of Sodium at Yarner Wood
DOI: 10.6084/m9.figshare.19915383.v1
title: Additional file 1 of SOCS7/HuR/FOXM1 signaling axis inhibited high-grade serous ovarian carcinoma progression

description: Additional file 1: Supplementary Table 1. HuR/ELAV-like Protein 1 was identified to interact with SOCS7 via liquid chromatography/mass spectrometry (LC/MS).
DOI: 10.48597/ga2c-6dap
title: Measurement of Magnesium at Strath Vaich Dam

description: Measurement of Magnesium at Strath Vaich Dam
DOI: 10.48597/gdzj-5fzd
title: Measurement of Dibenzo_al_pyrene at Auchencorth Moss

description: Measurement of Dibenzo_al_pyrene at Auchencorth Moss
DOI: 10.6084/m9.figshare.19915366
title: Additional file 1 of Characterization of the bacterial microbiota in different gut and oral compartments of splendid japalure (Japalura sensu lato)

description: Additional file 1.
DOI: 10.48597/gegn-p6sq
title: Measurement of Biphenyl at Auchencorth Moss

description: Measurement of Biphenyl at Auchencorth Moss
DOI: 10.48597/gnme-8hf5
title: Measurement of Conductivity at Yarner Wood

description: Measurement of Conductivity at Yarner Wood
DOI: 10.48597/gvnr-c5cp
title: Measurement of Perylene at Auchencorth Moss

description: Measurement of Perylene at Auchencorth Moss
DOI: 10.48597/h7u6-dkw3
title: Measurement of Dibenzo_ae_pyrene at Auchencorth Moss

description: Measurement of Dibenzo_ae_pyrene at Auchencorth Moss
DOI: 10.48597/herr-xn29
title: Measurement of Sodium at Yarner Wood

description: Measurement of Sodium at Yarner Wood
DOI: 10.6084/m9.figshare.19915366.v1
title: Additional file 1 of Characterization of the bacterial microbiota in different gut and oral compartments of splendid japalure (Japalura sensu lato)

description: Additional file 1.
DOI: 10.48597/jp2k-9sdx
title: Measurement of Precipitation_amount at Eskdalemuir

description: Measurement of Precipitation_amount at Eskdalemuir
DOI: 10.6084/m9.figshare.14672673.v1
title: Metadata record for the manuscript: Analytical validation of a targeted liquid biopsy assay with comprehensive molecular and clinical profiling of circulating tumor DNA from 1,000 patients

description: <b>Summary</b><br>

This
metadata record provides details of the data supporting the claims of the
related manuscript: “Validation of a liquid biopsy assay with molecular and clinical profiling of circulating tumor DNA”.

The
related study presents extensive validation studies of the Tempus xF liquid
biopsy assay (a 105-gene, hybrid-capture, next-generation sequencing (NGS)
assay that detects single-nucleotide variants, insertions/deletions, copy
number variants, and chromosomal rearrangements) using reference standards,
cell lines, and patient samples that establish high sensitivity, specificity,
and accuracy in variant detection.

 

Type of data:
liquid biopsy 

Subject of
data: <i>Homo sapiens</i>

Sample size:
1000

Recruitment:
randomly selected cancer patients who had clinical plasma specimens sequenced
with the xF panel at CAP/CLIA-certified Tempus Labs, Inc.

 

<b>Data
access</b>

The de-identified clinical data that
support findings from the retrospective profiling study have been deposited in
the Vivli repository (https://vivli.org/) in the file ‘xf_1000_De-identified_Phenotypic_Data_and_ctFE.tsv’
under the following accession: T20.01 (https://search.vivli.org/?search=T20.01). Access is restricted, and interested
parties must make an authorised request to the Vivli repository.

The
following supplementary tables are openly available in accessible format as
part of this <i>figshare </i>data record:

- Supplementary
Table 4.xlsx. This table underlies Figure 1 of the related article: Inter-assay
comparison between Tempus xF, ddPCR, and Tempus xT results.

- Supplementary
Table 1. Analysis Variants detected by the Tempus xF assay 

- Supplementary
Table 2. Overview of samples and experiments

- Supplementary
Table 3. Probabilistic noise filtering methodology improves variant

Raw data
from the validation experiments were generated and analysed as part of a
CAP/CLIA validation. As such, they are not publicly available but have been
thoroughly reviewed by those governing authorities.

 

<b>Corresponding author(s) for this study</b>

Nike
Beaubier, Tempus Labs, Chicago, IL, USA. Nike.Beaubier@tempus.com.<br>
<br>
<b></b>

<b>Study
approval </b>

The
study protocol was submitted to the Advarra Institutional Review Board (IRB),
which determined the research was exempt from IRB oversight and approved a
waiver of HIPAA authorization for this study.
DOI: 10.48597/jzx3-m75m
title: Measurement of Sodium at Eskdalemuir

description: Measurement of Sodium at Eskdalemuir
DOI: 10.48597/kdsn-7utk
title: Measurement of Manganese at Harwell

description: Measurement of Manganese at Harwell
DOI: 10.48597/m5r7-c865
title: Measurement of Calcium at Eskdalemuir

description: Measurement of Calcium at Eskdalemuir
DOI: 10.48597/md47-v3fk
title: Measurement of Iron_57 at Harwell

description: Measurement of Iron_57 at Harwell
DOI: 10.48597/mdbn-p7xu
title: Measurement of Ammonium at Strath Vaich Dam

description: Measurement of Ammonium at Strath Vaich Dam
DOI: 10.48597/mkgv-2yvv
title: Measurement of 1-methylnaphthalene at Harwell

description: Measurement of 1-methylnaphthalene at Harwell
DOI: 10.48597/nmc3-zdpg
title: Measurement of Arsenic at Harwell

description: Measurement of Arsenic at Harwell
DOI: 10.48597/npxh-qt4z
title: Measurement of Nitrate at Eskdalemuir

description: Measurement of Nitrate at Eskdalemuir
DOI: 10.48597/ns67-cvqz
title: Measurement of Ammonium at High Muffles

description: Measurement of Ammonium at High Muffles
DOI: 10.25378/janelia.13624268.v1
title: Ground-truth cell body segmentation used for Starfinity training

description: Accurate segmentation of volumetric fluorescence image data has been a long-standing challenge and it can considerably degrade the accuracy of multiplexed fluorescence <i>in situ </i>hybridization (FISH) analysis. To overcome this challenge, we developed a deep learning-based automatic 3D segmentation algorithm, called Starfinity. It first predicts its cell center probability and its radial distances to the nearest cell borders for each pixel. It then aggregates pixel affinity maps from the densely predicted distances and applies a watershed segmentation on the affinity maps using the thresholded center probability as seeds.<br><br>This repository contains (1) 'ground-truth' segmentation annotation used to train the Starfinity model, (2) the trained Starfinity model used to predict segmentation masks for EASI-FISH data from the lateral hypothalamus (LHA). DAPI-stained RNA images collected from the Zeiss Z.1 lightsheet microscope after expansion (ExM) were used. The manual segmentation was performed using Paintera on full-resolution (0.23µm x 0.23µm x 0.42µm) images. The raw and annotated images were then down sampled 4x4x2 (0.92µm x 0.92µm x 0.84µm) for training and prediction.<br><br>Manual inspection of the predicted segmentation from ~5% of cells in 4 LHA samples (a total of ~4,000 out of 80,000 cells) suggests that 93% of cells were properly segmented with this model.
DOI: 10.48597/nykj-p93w
title: Measurement of Calcium at Harwell

description: Measurement of Calcium at Harwell
DOI: 10.48597/p3s3-bbg8
title: Measurement of Magnesium at Yarner Wood

description: Measurement of Magnesium at Yarner Wood
DOI: 10.48597/p8sm-ej7u
title: Measurement of Conductivity at Eskdalemuir

description: Measurement of Conductivity at Eskdalemuir
DOI: 10.48597/pauz-b2va
title: Measurement of Conductivity at Harwell

description: Measurement of Conductivity at Harwell
DOI: 10.48597/pcz5-nxv3
title: Measurement of 2-methylnaphthalene at Auchencorth Moss

description: Measurement of 2-methylnaphthalene at Auchencorth Moss
DOI: 10.6069/uwlswd.d1cd-6t83
title: Videorecording: color
title: MARC21 007/03 values for videorecordings expressed using RDF

description: Color characteristics of a videorecording.
DOI: 10.48597/pg9k-nquc
title: Measurement of Precipitation_amount at Strath Vaich Dam

description: Measurement of Precipitation_amount at Strath Vaich Dam
DOI: 10.48597/pqfp-4g9q
title: Measurement of Chloride at High Muffles

description: Measurement of Chloride at High Muffles
DOI: 10.48597/pr4h-qt6f
title: Measurement of Sulphate_total at Strath Vaich Dam

description: Measurement of Sulphate_total at Strath Vaich Dam
DOI: 10.48597/pw6r-j76p
title: Measurement of 2-methylnaphthalene at Harwell

description: Measurement of 2-methylnaphthalene at Harwell
DOI: 10.48597/q2er-fh57
title: Measurement of Conductivity at Lough Navar

description: Measurement of Conductivity at Lough Navar
DOI: 10.48597/qapc-jfe9
title: Measurement of Ammonium at Yarner Wood

description: Measurement of Ammonium at Yarner Wood
DOI: 10.48597/qe8y-g6xm
title: Measurement of pH at Eskdalemuir

description: Measurement of pH at Eskdalemuir
DOI: 10.48597/qtbu-rhrm
title: Measurement of Chloride at Harwell

description: Measurement of Chloride at Harwell
DOI: 10.48597/qzan-xhbc
title: Measurement of Potassium at High Muffles

description: Measurement of Potassium at High Muffles
DOI: 10.48597/req7-cznw
title: Measurement of Magnesium at Lough Navar

description: Measurement of Magnesium at Lough Navar
DOI: 10.48597/rhkq-4g9e
title: Measurement of Conductivity at Harwell

description: Measurement of Conductivity at Harwell
DOI: 10.48597/rkct-6muq
title: Measurement of Zinc at Harwell

description: Measurement of Zinc at Harwell
DOI: 10.48597/rm2c-xqyb
title: Measurement of Magnesium at Eskdalemuir

description: Measurement of Magnesium at Eskdalemuir
DOI: 10.48597/rusy-8qb8
title: Measurement of Calcium at Yarner Wood

description: Measurement of Calcium at Yarner Wood
DOI: 10.48597/sfyr-jemc
title: Measurement of Chloride at Yarner Wood

description: Measurement of Chloride at Yarner Wood
DOI: 10.48597/sk7b-hp83
title: Measurement of Arsenic at Auchencorth Moss

description: Measurement of Arsenic at Auchencorth Moss
DOI: 10.48597/swkd-ebgq
title: Measurement of 1-methylnaphthalene at Auchencorth Moss

description: Measurement of 1-methylnaphthalene at Auchencorth Moss
DOI: 10.48597/sye9-jcbe
title: Measurement of Sodium at High Muffles

description: Measurement of Sodium at High Muffles
DOI: 10.48597/syf4-k4vs
title: Measurement of pH at Strath Vaich Dam

description: Measurement of pH at Strath Vaich Dam
DOI: 10.48597/thbb-tznq
title: Measurement of Sulphate_total at Harwell

description: Measurement of Sulphate_total at Harwell
DOI: 10.48597/tj5k-ufej
title: Measurement of Potassium at Yarner Wood

description: Measurement of Potassium at Yarner Wood
DOI: 10.48597/twxy-t84j
title: Measurement of Sulphate_total at High Muffles

description: Measurement of Sulphate_total at High Muffles
DOI: 10.48597/u43y-qu42
title: Measurement of pH at Yarner Wood

description: Measurement of pH at Yarner Wood
DOI: 10.48597/ucfx-hw55
title: Measurement of Nitrate at Strath Vaich Dam

description: Measurement of Nitrate at Strath Vaich Dam
DOI: 10.48597/uq7h-uncf
title: Measurement of Dibenzo_ai_pyrene at Auchencorth Moss

description: Measurement of Dibenzo_ai_pyrene at Auchencorth Moss
DOI: 10.48597/uzqs-rpw6
title: Measurement of Benzo_ghi_perylene at Auchencorth Moss

description: Measurement of Benzo_ghi_perylene at Auchencorth Moss
DOI: 10.48597/v5yb-fxrt
title: Measurement of Calcium at Lough Navar

description: Measurement of Calcium at Lough Navar
DOI: 10.48597/v6z9-p777
title: Measurement of Coronene at Auchencorth Moss

description: Measurement of Coronene at Auchencorth Moss
DOI: 10.6069/uwlswd.r74w-5w82
title: Videorecording: configuration of playback channels
title: MARC21 007/08 values for videorecordings expressed using RDF

description: Configuration of intended playback channels for the sound
 portion of a videorecording.
DOI: 10.6069/uwlswd.vcc6-0j54
title: Videorecording: dimensions
title: MARC21 007/07 values for videorecordings expressed using RDF

description: Width of the videorecording.
DOI: 10.15489/t91o2vfbfb69
title: Sentinel-5P TROPOMI – Cloud Optical Thickness (COT), Level 3 – Global

description: The TROPOMI instrument onboard the Copernicus SENTINEL-5 Precursor satellite is a nadir-viewing, imaging spectrometer that provides global measurements of atmospheric properties and constituents on a daily basis. It is contributing to monitoring air quality and climate, providing critical information to services and decision makers.

The instrument uses passive remote sensing techniques by measuring the top of atmosphere solar radiation reflected by and radiated from the earth and its atmosphere. The four spectrometers of TROPOMI cover the ultraviolet (UV), visible (VIS), Near Infra-Red (NIR) and Short Wavelength Infra-Red (SWIR) domains of the electromagnetic spectrum. The operational trace gas products generated at DLR on behave ESA are: Ozone (O3), Nitrogen Dioxide (NO2), Sulfur Dioxide (SO2), Formaldehyde (HCHO), Carbon Monoxide (CO) and Methane (CH4), together with clouds and aerosol properties.

Daily observations are binned onto a regular latitude-longitude grid.

This product displays the Cloud Optical Thickness (COT) around the globe. Clouds play a crucial role in the Earth's climate system and have significant effects on trace gas retrievals. The cloud optical thickness is retrieved from the O2-A band using the ROCINN algorithm.

The DLR INPULS project develops (a) innovative retrieval algorithms and processors for the generation of value-added products from the atmospheric Copernicus missions Sentinel-5 Precursor, Sentinel-4, and Sentinel-5, (b) cloud-based (re)processing systems, (c) improved data discovery and access technologies as well as server-side analytics for the users, and (d) data visualization services.
DOI: 10.6069/uwlswd.b441-n943
title: Videorecording: format
title: MARC21 007/04 values for videorecordings expressed using RDF

description: Videotape or videodisc recording format.
DOI: 10.15489/ozxr4ngp0473
title: Sentinel-5P TROPOMI – Cloud-Top Height (CTH), Level 3 – Global

description: The TROPOMI instrument onboard the Copernicus SENTINEL-5 Precursor satellite is a nadir-viewing, imaging spectrometer that provides global measurements of atmospheric properties and constituents on a daily basis. It is contributing to monitoring air quality and climate, providing critical information to services and decision makers.

The instrument uses passive remote sensing techniques by measuring the top of atmosphere solar radiation reflected by and radiated from the earth and its atmosphere. The four spectrometers of TROPOMI cover the ultraviolet (UV), visible (VIS), Near Infra-Red (NIR) and Short Wavelength Infra-Red (SWIR) domains of the electromagnetic spectrum. The operational trace gas products generated at DLR on behave ESA are: Ozone (O3), Nitrogen Dioxide (NO2), Sulfur Dioxide (SO2), Formaldehyde (HCHO), Carbon Monoxide (CO) and Methane (CH4), together with clouds and aerosol properties.

Daily observations are binned onto a regular latitude-longitude grid.

This product displays the Cloud-Top Height (CTH) around the globe. Clouds play a crucial role in the Earth's climate system and have significant effects on trace gas retrievals. The cloud-top height is retrieved from the O2-A band using the ROCINN algorithm. 

The DLR INPULS project develops (a) innovative retrieval algorithms and processors for the generation of value-added products from the atmospheric Copernicus missions Sentinel-5 Precursor, Sentinel-4, and Sentinel-5, (b) cloud-based (re)processing systems, (c) improved data discovery and access technologies as well as server-side analytics for the users, and (d) data visualization services.
DOI: 10.15489/ood9v89pq539
title: Sentinel-5P TROPOMI – Sulfur Dioxide (SO2), Level 3 – Global

description: The TROPOMI instrument onboard the Copernicus SENTINEL-5 Precursor satellite is a nadir-viewing, imaging spectrometer that provides global measurements of atmospheric properties and constituents on a daily basis. It is contributing to monitoring air quality and climate, providing critical information to services and decision makers.

The instrument uses passive remote sensing techniques by measuring the top of atmosphere solar radiation reflected by and radiated from the earth and its atmosphere. The four spectrometers of TROPOMI cover the ultraviolet (UV), visible (VIS), Near Infra-Red (NIR) and Short Wavelength Infra-Red (SWIR) domains of the electromagnetic spectrum. The operational trace gas products generated at DLR on behave ESA are: Ozone (O3), Nitrogen Dioxide (NO2), Sulfur Dioxide (SO2), Formaldehyde (HCHO), Carbon Monoxide (CO) and Methane (CH4), together with clouds and aerosol properties.

Daily observations are binned onto a regular latitude-longitude grid.

This product displays the sulphur dioxide (SO2) concentration around the globe. Sulphur dioxide enters the atmosphere through volcanic eruptions and human-related activities.

The DLR INPULS project develops (a) innovative retrieval algorithms and processors for the generation of value-added products from the atmospheric Copernicus missions Sentinel-5 Precursor, Sentinel-4, and Sentinel-5, (b) cloud-based (re)processing systems, (c) improved data discovery and access technologies as well as server-side analytics for the users, and (d) data visualization services.
DOI: 10.15489/hb5a78qt8z39
title: Sentinel-5P TROPOMI – Cloud Fraction (CF), Level 3 – Global

description: The TROPOMI instrument onboard the Copernicus SENTINEL-5 Precursor satellite is a nadir-viewing, imaging spectrometer that provides global measurements of atmospheric properties and constituents on a daily basis. It is contributing to monitoring air quality and climate, providing critical information to services and decision makers.

The instrument uses passive remote sensing techniques by measuring the top of atmosphere solar radiation reflected by and radiated from the earth and its atmosphere. The four spectrometers of TROPOMI cover the ultraviolet (UV), visible (VIS), Near Infra-Red (NIR) and Short Wavelength Infra-Red (SWIR) domains of the electromagnetic spectrum. The operational trace gas products generated at DLR on behave ESA are: Ozone (O3), Nitrogen Dioxide (NO2), Sulfur Dioxide (SO2), Formaldehyde (HCHO), Carbon Monoxide (CO) and Methane (CH4), together with clouds and aerosol properties.

Daily observations are binned onto a regular latitude-longitude grid.

This product displays the Cloud Fraction (CF) around the globe. Clouds play a crucial role in the Earth's climate system and have significant effects on trace gas retrievals. The radiometric cloud fraction is retrieved from the UV using the OCRA algorithm.

The DLR INPULS project develops (a) innovative retrieval algorithms and processors for the generation of value-added products from the atmospheric Copernicus missions Sentinel-5 Precursor, Sentinel-4, and Sentinel-5, (b) cloud-based (re)processing systems, (c) improved data discovery and access technologies as well as server-side analytics for the users, and (d) data visualization services.
DOI: 10.15468/z2uszx
title: 2015 Scottish Environment Protection Agency (SEPA) Outer Cromarty Firth Intertidal Seagrass Survey

description: Trial Intertidal seagrass survey at two sites (Udale Bay & Nigg Bay) in the Outer Cromarty Firth, Scotland for EU Water Framework Directive Monitoring using the WFD (Angiosperm) Intertidal Seagrass tool. The tool looks at the species composition of the seagrass bed, the density (as percent cover) and the extent of the seagrass bed.
DOI: 10.15489/8yy9gz5tb356
title: Sentinel-5P TROPOMI – Ozone (O3), Level 3 – Global

description: The TROPOMI instrument onboard the Copernicus SENTINEL-5 Precursor satellite is a nadir-viewing, imaging spectrometer that provides global measurements of atmospheric properties and constituents on a daily basis. It is contributing to monitoring air quality and climate, providing critical information to services and decision makers. The instrument uses passive remote sensing techniques by measuring the top of atmosphere solar radiation reflected by and radiated from the earth and its atmosphere. The four spectrometers of TROPOMI cover the ultraviolet (UV), visible (VIS), Near Infra-Red (NIR) and Short Wavelength Infra-Red (SWIR) domains of the electromagnetic spectrum. The operational trace gas products generated at DLR on behave ESA are: Ozone (O3), Nitrogen Dioxide (NO2), Sulfur Dioxide (SO2), Formaldehyde (HCHO), Carbon Monoxide (CO) and Methane (CH4), together with clouds and aerosol properties. Daily observations are binned onto a regular latitude-longitude grid. 

This product is generated in the scope of the DLR project INPULS. INPULS develops (a) innovative retrieval algorithms and processors for the generation of value-added products from the atmospheric Copernicus missions Sentinel-5 Precursor, Sentinel-4, and Sentinel-5, (b) cloud-based (re)processing systems, (c) improved data discovery and access technologies as well as server-side analytics for the users, and (d) data visualization services. 

This product displays the ozone (O3) concentration globally (in Dobson Unit). The ozone layer in the stratosphere protects the biosphere from harmful solar ultraviolet radiation. Ozone in troposphere can pose risks to the health of humans, animals, and vegetation.
DOI: 10.6069/uwlswd.9r2z-x073
title: Videorecording: medium for sound
title: MARC21 007/06 values for videorecordings expressed using RDF

description: Specific medium used to carry the sound of an item, whether
 that sound is carried on the videorecording or is separate, and the type of sound playback
 required for the item.