cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dmp9cv
title: Occurrence Download

description: A dataset containing 7980000 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Japan"
 ]
}

 The dataset includes 7980000 records from 2039 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070851-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpnfh2
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lonchura malacca (Linnaeus, 1766)",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001396-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tjeemz
title: Occurrence Download

description: A dataset containing 1418 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichilia prieureana A.Juss."
 ]
}

 The dataset includes 1418 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007044-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9hjhy
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leucocoryne coronata Ravenna"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012447-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u768f4
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Acrocomia aculeata (Jacq.) Lodd. ex R.Keith"
 ]
}

 The dataset includes 64 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0233895-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eankc8
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mocinnodaphne cinnamomoidea Lorea-Hern."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001396-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ovrlpi
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eciton quadriglume (Haliday, 1836)"
 ]
}

 The dataset includes 31 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007044-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2eqtb
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Reptilia",
 "Geometry POLYGON((14.732666 -0.373532,13.820800 0.076904,13.106689 0.032958,13.491210 -0.714092,13.161621 -1.164470,12.897949 -1.219390,12.788085 -1.735574,12.722167 -1.966166,13.018798 -2.493109,13.623046 -2.504085,14.348144 -2.526036,14.732666 -0.373532))"
 ]
}

 The dataset includes 21 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012453-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s98ngj
title: Occurrence Download

description: A dataset containing 1417357 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Brassicaceae",
 "Year 2006-2016"
 ]
}

 The dataset includes 1417357 records from 1235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0260581-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rfbdzu
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Wedelia alagoensis Baker"
 ]
}

 The dataset includes 38 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059320-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lsgie0
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Phytoplankton abundance at station Casma_2003-02-27_1, Casma, Peru"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012453-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5rsn3f
title: Occurrence Download

description: A dataset containing 1433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Centrosema brasilianum (L.) Benth."
 ]
}

 The dataset includes 1433 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086765-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gjtna6
title: Occurrence Download

description: A dataset containing 305568 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ardea purpurea Linnaeus, 1766"
 ]
}

 The dataset includes 305568 records from 390 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242559-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.17694836.v1
title: Inferior survival and frequent hepatic dysfunction in non-Hodgkin’s lymphoma patients with HBV infection: a systematic review and meta-analysis

description: No clear consensus has been reached about the clinical features in hepatitis B virus (HBV)-associated non-Hodgkin’s lymphoma (NHL) patients. We performed a systematic review and meta-analysis to explore the clinical characteristics and prognosis of NHL patients with chronic HBV infection (HBsAg+). Seven electronic databases were searched for relevant studies up to 31 January 2021. Hazard ratio (HR) or odds ratio (OR) corresponding to 95% confidence interval (CI) were calculated to estimate the outcomes. The primary outcome was survival outcome, including overall survival (OS) and progression-free survival (PFS). Subgroup analysis was performed in diffuse large B-cell lymphoma (DLBCL) patients. Twenty-three retrospective studies, comprising of 1202 HBsAg+ NHL patients and 4448 HBsAg− NHL patients, were included. Twenty-two studies were conducted on Chinese patients. Compared with HBsAg− NHL patients, significantly shorter OS (HR 1.68; 95% CI 1.48–1.91) and PFS (HR 1.80; 95% CI 1.20–2.71), lower rate of complete remission (OR 0.59, 95% CI 0.44–0.80) and higher frequency of hepatic dysfunction during chemotherapy (OR 3.46; 95% CI 2.61–4.57) were demonstrated in HBsAg+ NHL patients. Moreover, HBsAg+ patients were characterized by a younger age of disease onset, advanced disease stage, higher level of LDH and more frequent presence of B symptoms, and involvement of spleen and liver at diagnosis. Furthermore, subgroup analysis in DLBCL patients was also showed similar results. Our study implicated that NHL patients, especially DLBCL, with chronic HBV infection displayed inferior prognosis, higher incidence of hepatic dysfunction during chemotherapy and distinct clinical features.
DOI: 10.6084/m9.figshare.20315836
title: Additional file 4 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 4: Table S1.1. HRD scores of PCa patients from the PANCAN cohort. Table S1.2. Differentially expressed genes.
DOI: 10.6084/m9.figshare.20315845
title: Additional file 7 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 7: Table S4. Correlations among HRD-related genes.
DOI: 10.6084/m9.figshare.20315848.v1
title: Additional file 8 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 8: Table S5. Information of HRD clusters and patient survival.
DOI: 10.6084/m9.figshare.20315812
title: Additional file 13 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 13: Table S10. HRDscore and existing famous biological pathways based on proteomic data.
DOI: 10.6084/m9.figshare.20315836.v1
title: Additional file 4 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 4: Table S1.1. HRD scores of PCa patients from the PANCAN cohort. Table S1.2. Differentially expressed genes.
DOI: 10.6084/m9.figshare.7581020.v1
title: Additional file 3: of Constructing network topologies for multiple signal-encoding functions

description: The original codes used in our computation for one-node merging of functional modules. (ZIP 1608 kb)
DOI: 10.6084/m9.figshare.20315815
title: Additional file 14 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 14: Table S11. The correlation between immune cell type and patient survival based on Cox analyses.
DOI: 10.6084/m9.figshare.7581011.v1
title: Additional file 2: of Constructing network topologies for multiple signal-encoding functions

description: The original codes used in our computation for enumeration of sub-functions. (ZIP 2318 kb)
DOI: 10.6084/m9.figshare.7581026.v1
title: Additional file 4: of Constructing network topologies for multiple signal-encoding functions

description: The original codes used for two-node merging of functional modules. (ZIP 1018 kb)
DOI: 10.6084/m9.figshare.15073271.v1
title: Elevated Ras related GTP binding B (RRAGB) expression predicts poor overall survival and constructs a prognostic nomogram for colon adenocarcinoma

description: Currently, no articles have explored the roles of RRAGB gene in the occurrence and development of cancer. By means of The Cancer Genome Atlas (TCGA) data mining, we found that this gene might be a novel prognostic predictor for colon adenocarcinoma (COAD). Hence, this article was carried out to explore its roles in COAD and associations with immunity. RRAGB single-gene expression matrix and corresponding clinical information were extracted from TCGA database. Univariate/multivariate cox regression analyses and gene set enrichment analysis (GSEA) were utilized to identify independent prognostic factors and RRAGB related pathways, respectively. Relationships between RRAGB and immunity were also analyzed. Boxplot and K-M survival analysis indicated that RRAGB was not only differently expressed in COAD (<i>P</i> &lt; 0.05), but also significantly associated with overall survival (OS; <i>P</i> &lt; 0.05). Univariate and multivariate Cox hazard regression analyses indicated that RRAGB could serve as an independent prognostic factor for COAD (both <i>P</i> &lt; 0.05). GSEA identified five signaling pathways significantly enriched in the high-RRAGB expression phenotype. Moreover, a RRAGB-based nomogram was successfully constructed and displayed a satisfactory performance. In addition, RRAGB expression was found to be significantly associated with microsatellite instability (MSI), tumor mutational burden (TMB) and immunity. Our results revealed that RRAGB could be a prognostic biomarker for COAD in terms of OS and markedly related to MSI, TMB, and immunity. We also constructed an RRAGB-based nomogram with a satisfactory performance. Further researches should be carried out to validate our findings.
DOI: 10.6084/m9.figshare.7581026
title: Additional file 4: of Constructing network topologies for multiple signal-encoding functions

description: The original codes used for two-node merging of functional modules. (ZIP 1018 kb)
DOI: 10.6084/m9.figshare.7581035.v1
title: Additional file 5: of Constructing network topologies for multiple signal-encoding functions

description: The original codes used for three-node merging of functional modules. (ZIP 1162 kb)
DOI: 10.6084/m9.figshare.17694836
title: Inferior survival and frequent hepatic dysfunction in non-Hodgkin’s lymphoma patients with HBV infection: a systematic review and meta-analysis

description: No clear consensus has been reached about the clinical features in hepatitis B virus (HBV)-associated non-Hodgkin’s lymphoma (NHL) patients. We performed a systematic review and meta-analysis to explore the clinical characteristics and prognosis of NHL patients with chronic HBV infection (HBsAg+). Seven electronic databases were searched for relevant studies up to 31 January 2021. Hazard ratio (HR) or odds ratio (OR) corresponding to 95% confidence interval (CI) were calculated to estimate the outcomes. The primary outcome was survival outcome, including overall survival (OS) and progression-free survival (PFS). Subgroup analysis was performed in diffuse large B-cell lymphoma (DLBCL) patients. Twenty-three retrospective studies, comprising of 1202 HBsAg+ NHL patients and 4448 HBsAg− NHL patients, were included. Twenty-two studies were conducted on Chinese patients. Compared with HBsAg− NHL patients, significantly shorter OS (HR 1.68; 95% CI 1.48–1.91) and PFS (HR 1.80; 95% CI 1.20–2.71), lower rate of complete remission (OR 0.59, 95% CI 0.44–0.80) and higher frequency of hepatic dysfunction during chemotherapy (OR 3.46; 95% CI 2.61–4.57) were demonstrated in HBsAg+ NHL patients. Moreover, HBsAg+ patients were characterized by a younger age of disease onset, advanced disease stage, higher level of LDH and more frequent presence of B symptoms, and involvement of spleen and liver at diagnosis. Furthermore, subgroup analysis in DLBCL patients was also showed similar results. Our study implicated that NHL patients, especially DLBCL, with chronic HBV infection displayed inferior prognosis, higher incidence of hepatic dysfunction during chemotherapy and distinct clinical features.
DOI: 10.6084/m9.figshare.20315839
title: Additional file 5 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 5: Table S2. Univariate Cox analysis results of differentially expressed genes.
DOI: 10.6084/m9.figshare.20315848
title: Additional file 8 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 8: Table S5. Information of HRD clusters and patient survival.
DOI: 10.6084/m9.figshare.20315821
title: Additional file 16 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 16: Table S13. The clinical characteristics, pathological diagnosis, HRD gene mutation, and SLC26A4 expressions of the samples in Xiangya Cohort.
DOI: 10.6084/m9.figshare.21358158
title: Additional file 4 of Elevated NRAS expression during DCIS is a potential driver for progression to basal-like properties and local invasiveness

description: Additional file 4: Table S3. NRAS overexpression induces basal-like features in a human luminal DCIS model SUM225 cells.
DOI: 10.6084/m9.figshare.17694752
title: Downregulation of Smad4 expression confers chemoresistance against imatinib mesylate to chronic myeloid leukemia K562 cells

description: <b>Objective:</b> Imatinib mesylate (IM), a tyrosine kinase inhibitor, exhibits clinically prominent effects against chronic myeloid leukemia (CML); however, a few patients have shown resistance to IM treatment, resulting in disease progression. Smad4 is a tumor inhibitor that transduces TGF-β signaling and modulates genomic stability. Previous studies have indicated that decreased Smad4 expression played a bidirectional role in chemosensitivity in many types of cancers. Therefore, this study aims to evaluate the association between IM sensitivity and decreased Smad4 expression in human CML K562 cells. <b>Methods:</b> Bone marrow (BM) samples were acquired from the patients prior to treatment. qRT-PCR, Western Blotting (WB), colony formation assay (CFA), and apoptosis assay were used to detect relevant indices. <b>Results:</b> Smad4 expression was downregulated in the bone marrow and plasma of patients with multidrug-resistant CML as well as IM-resistant K562 (K562R) cells compared with samples collected from CML patients and K562 cells. Smad4 overexpression inhibited IM-treated K562R cell proliferation and augmented apoptosis, whereas <i>Smad4</i> silencing promoted viability and inhibited apoptosis in IM-treated K562 cells. In addition, Smad4 expression was inversely correlated with laminin subunit gamma 1 (LAMC1) expression. The upregulation or downregulation of LAMC1 expression partially abolished the effect of Smad4 overexpression or silencing on the IM resistance of CML cells. <b>Conclusion:</b> The downregulation of Smad4 expression might induce drug resistance in CML cells and displayed a possible mechanism through which Smad4 modulates CML cell survival and apoptosis upon IM treatment.
DOI: 10.6084/m9.figshare.7581011
title: Additional file 2: of Constructing network topologies for multiple signal-encoding functions

description: The original codes used in our computation for enumeration of sub-functions. (ZIP 2318 kb)
DOI: 10.6084/m9.figshare.20315851.v1
title: Additional file 9 of SLC26A4 correlates with homologous recombination deficiency and patient prognosis in prostate cancer

description: Additional file 9: Table S6.1. ESTIMATE score. Table S6.2 Immune cell fractions based on ImmuCellAI algorithm. Table S6.3 Immune cell fractions based on ImmuCellAI algorithm. Table S6.4 Immune cell fractions based on CIBERSORT algorithm.
DOI: 10.6084/m9.figshare.7581035
title: Additional file 5: of Constructing network topologies for multiple signal-encoding functions

description: The original codes used for three-node merging of functional modules. (ZIP 1162 kb)
DOI: 10.6084/m9.figshare.16639665.v1
title: Additional file 1 of Integrative analyses of targeted metabolome and transcriptome of Isatidis Radix autotetraploids highlighted key polyploidization-responsive regulators

description: Additional file 1: Table S1. Quality statistics of the filtered RNAseq reads.
DOI: 10.6084/m9.figshare.21358095
title: Additional file 1 of Bioinformatics methods in biomarkers of preeclampsia and associated potential drug applications

description: Additional file 1:
DOI: 10.6084/m9.figshare.21358095.v1
title: Additional file 1 of Bioinformatics methods in biomarkers of preeclampsia and associated potential drug applications

description: Additional file 1:
DOI: 10.6084/m9.figshare.16639752
title: Additional file 12 of Development and validation of a 1 K sika deer (Cervus nippon) SNP Chip

description: Additional file 12 Table S5. The frequency of the specific loci in the hybrid deer.
DOI: 10.6084/m9.figshare.16639656
title: Additional file 1 of The GRAS gene family and its roles in seed development in litchi (Litchi chinensis Sonn)

description: Additional file 1: Table S1. GRAS proteins of litchi, Arabidopsis, and rice. Table S2. Information of LcGRAS genes. Table S3. Syntenic gene pairs among litchi, Arabidopsis and rice. Table S4. Information of miRNA targets in litchi GRAS gene family. Table S5. Gene expression profile of 48 LcGRAS members among four seed development stages (Normalized as FPKM). Table S6. Information of differentially experssed LcGRAS genes. Table S7. Specific primers of 48 LcGRAS genes used for qPCR in this study.
DOI: 10.6084/m9.figshare.16639668
title: Additional file 2 of Integrative analyses of targeted metabolome and transcriptome of Isatidis Radix autotetraploids highlighted key polyploidization-responsive regulators

description: Additional file 2: Table S2.qRT-PCR primers of Isatidis Radix genes.
DOI: 10.6084/m9.figshare.20315798.v1
title: Additional file 1 of Prognostic prediction of systemic immune-inflammation status for patients with colorectal cancer: a novel pyroptosis-related model

description: Additional file 1: Supplementary Table 1. Leukocyte signature matrix (LM22).
DOI: 10.6084/m9.figshare.16639824.v1
title: Additional file 4 of Proteome-scale profiling reveals MAFF and MAFG as two novel key transcription factors involved in palmitic acid-induced umbilical vein endothelial cell apoptosis

description: Additional file 4: Table S1 TFRE results. Significantly different transcription factors among the control group, group 1, and group 2.
DOI: 10.6084/m9.figshare.16639833
title: Additional file 7 of Proteome-scale profiling reveals MAFF and MAFG as two novel key transcription factors involved in palmitic acid-induced umbilical vein endothelial cell apoptosis

description: Additional file 7: Table S4 TFRE results. Significantly different transcription factors between group 2 and the control group met the selection criteria of both a P value &lt;0.05 and a fold change &gt;2
DOI: 10.6084/m9.figshare.16639833.v1
title: Additional file 7 of Proteome-scale profiling reveals MAFF and MAFG as two novel key transcription factors involved in palmitic acid-induced umbilical vein endothelial cell apoptosis

description: Additional file 7: Table S4 TFRE results. Significantly different transcription factors between group 2 and the control group met the selection criteria of both a P value &lt;0.05 and a fold change &gt;2
DOI: 10.6084/m9.figshare.19785538.v1
title: Additional file 1 of Acute pancreatitis in pregnancy: a 10-year, multi-center, retrospective study in Beijing

description: Additional file 1: Data 1. The basic information of fetus of APIP patients.
DOI: 10.6084/m9.figshare.16639797
title: Additional file 3 of Hi-C profiling of cancer spheroids identifies 3D-growth-specific chromatin interactions in breast cancer endocrine resistance

description: Additional file 3. Supplemental excel file for listing strengthened loop genes in MCF7_2D, MCF7_3D, MCF7TR_2D and MCF7TR_3D.
DOI: 10.6084/m9.figshare.16639803.v1
title: Additional file 4 of Hi-C profiling of cancer spheroids identifies 3D-growth-specific chromatin interactions in breast cancer endocrine resistance

description: Additional file 4. Supplemental excel file for listing differential expressed genes between MCF7_3D. vs. MCF7TR_3D as well as MCF7_2D.vs.MCF7TR_2D.
DOI: 10.6084/m9.figshare.16639728
title: Additional file 1 of Effects of physical exercise on working memory in older adults: a systematic and meta-analytic review

description: Additional file 1.