cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8j3v4s9bs8
title: Data for: Rates and Products of Oxidation of Ferrous Iron in Trioctahedral Smectites

description: Data package for manuscript "Rates and Products of Oxidation of Ferrous Iron in Trioctahedral Smectites", by Robert J. Kupper, Nanqing Zhou, Clara S. Chan, Aaron Thompson, Jeffrey G. Catalano. The manuscript will be submitted to Geochimica et Cosmochimica Acta. This dataset contains sample characterization and oxidation kinetics results for two synthetic, Fe(II)-bearing trioctahedral smectites. Both clay minerals were suspended in media solution and then exposed to a series of oxidants: dissolved oxygen equilibrated with 21% O2, dissolved oxygen equilibrated with 2% O2, 5 mmol/L nitrite, or an excess of hydrogen peroxide. The post-reaction solids were characterized by powder X-ray diffraction and Mossbauer spectroscopy. 

The file "Kupper2022_XRD_data.csv" contains powder X-ray diffraction patterns of moderate-iron trioctahedral smectite [Ca0.17(FeII1.59Mg0.78FeIII0.12Al0.33)(Si3.58Al0.42)O10(OH)2] and high-iron trioctahedral smectite [Ca0.20(FeII2.16Mg0.26FeIII0.19Al0.24)(Si3.48Al0.52)O10(OH)2]. "Unaltered" indicates the initial, synthesized clays. The other labels indicate samples reacted with the specified oxidant: 21% O2, 2% O2, 5 mmol/L dissolved nitrite, and an excess of hydrogen peroxide (H2O2). These data appear in Figures 1, 5, and 6 in the associated manuscript.

The folder "Kupper2022_Mossbauer_data" contains the Mossbauer spectra of moderate-iron trioctahedral smectite and high-iron trioctahedral smectite. "Unaltered" indicates the initial, synthesized clays. The other labels indicate samples reacted with the specified oxidant: 21% O2, 2% O2, 5 mmol/L dissolved nitrite, and an excess of hydrogen peroxide (H2O2). The subfolders labeled 295K, 13K, and 5K indicate the temperature in Kelvin at which data were collected. These data appears in Figures 2, 8, and 9 in the associated manuscript.

The file "Kupper2022_OxidationKinetics_data.csv" contains data on solid phase Fe(II)/Total Fe in the moderate-iron trioctahedral smectite and high-iron trioctahedral smectite as a function of time in hours during reaction with 21%O2, 2%O2, or 5 mmol/L nitrite. Oxidation-free control data are also provided. These data appear in Figures 3, 4, and S3 in the associated manuscript.

The file "Kupper2022_ModIron_Nitrite_data.csv" contains dissolved nitrite concentrations during the experiments with the moderate-iron smectite. These data appear in Figure S2 in the associated manuscript.

The folder "Kupper2022_Oxygen_data" contains dissolved oxygen concentrations (in umol/L) and temperature as a function of time for the oxidation experiments with the moderate- and high-iron smectite reacted with 21% or 2% O2. These data appear in Figure S1 in the associated manuscript.

The file "Kupper2022_EXAFS_data.csv" contains the XAFS spectra of the moderate- and high-iron smectites upon synthesis and after exposure to 21% O2 or H2O2.
DOI: 10.17632/96t8bknjc8
title: Strategic Priority of Wellness Tourism Resource at Kerala

description: Kerala has abundant resources for wellness tourism, including Ayurveda traditional medicine, but lacks a branding strategy to successfully compete internationally. A stakeholder-based participatory process was developed to co-create a branding strategy, involving a destination audit supported by an online conjoint analysis survey to discover the relative importance of ‘high-level’ attributes associated with Kerala’s wellness tourism resources. The data was collected among various stakeholders in Wellness related services in Kerala, India. The data was collected using the 1000minds platform based on the Conjoint Analysis. The data file has Part worth utilities, Atribute Ranking and Rank Frequencies.
DOI: 10.17632/bdm7pzfh45
title: Obesity Impairs Cognitive Function with No Effects on Anxiety-like Behaviour in Zebrafish

description: Growth parameters: Body weight (BW), length (BL), and body mass index (BMI) after overfeeding in zebrafish
Total lipid levels after zebrafish overfeeding 
Brain Monoamine quantification after overfeeding in zebrafish 
Anxiety-like behavior quantification using Novel Tank Test (NTDT)
Short (STM)- and long-term memory (LTM) quantification using aversive learning tests
DOI: 10.17632/csfdynf8zt
title: Data for: Femoral head and neck fenestration through a direct anterior approach combined with compacted autograft for the treatment of early stage non-traumatic osteonecrosis of the femoral head: a prospective study

description: Original data of the manuscript
DOI: 10.17632/ft3dsdh59x
title: Urolithin A attenuates auditory cell senescence by activating mitophagy

description: The datasets generated and analysed during the current study.
DOI: 10.17632/h5bw57k744
title: Original data of "CCL12 induces trabecular bone loss by stimulating RANKL production of BMSCs in acute lung injury"

description: Original data of "CCL12 induces trabecular bone loss by stimulating RANKL production of BMSCs in acute lung injury"
DOI: 10.17632/jwvrvhdkwv
title: Psychopathology_Dysregulation_COVID-19

description: Psychopathology in mothers and dysregulation in children before, during and after the COVID-19 pandemic peak.
DOI: 10.17632/knk6sk2dfv
title:  the Belief in a just world Scale  in College Students

description: 546 and 611 college students were selected using the cluster random sampling method for adapting the belief in a just world scale in Chinese college students and test its reliability and validity
DOI: 10.17632/pdfcdmnm82
title: Osteogenic Activity of ADSCs Enhanced by CEFFE and a Novel Strategy for ADSCs-Osteogenic Microtissue

description: Bone tissue engineering is considered the optimal solution for the repair of large bone defects. Previous studies by our team have demonstrated the effectiveness of a "bottom-up" microtissue engineering strategy using bone marrow mesenchymal stem cells (BMSCs) to improve the utilization efficiency of seed cells. However, this strategy requires the extraction of bone marrow, which is associated with significant trauma and difficulties in obtaining the cells. Adipose-derived mesenchymal stem cells (ADSCs), obtained from aspirated adipose tissue, offer a less invasive and more accessible alternative, but their osteogenic capacity is noticeably weaker, severely limiting their application as seed cells in bone tissue engineering repair.Cell-free fat extract (CEFFE) is a cell-free liquid component extracted from adipose tissue, which exhibits beneficial properties such as promoting proliferation, antioxidation, anti-apoptosis, and angiogenesis. In this study, during the preparation of ADSC-based osteogenic microtissues, we first discovered that CEFFE significantly enhanced the osteogenic activity of ADSCs. Furthermore, we observed the formation of dense osteogenic membranes as early as day 7 of osteogenic induction. When the microtissues based on CEFFE-treated ADSCs were implanted subcutaneously in nude mice, we found a significant enhancement in their osteogenic activity. Finally, to further investigate the mechanism underlying the enhancement of ADSC osteogenic differentiation by CEFFE, we performed transcriptomic analysis of CEFFE-treated ADSCs and validated the activation of the key PI3K-Akt pathway using Western blotting.In conclusion, this study presents a novel approach for the preparation of ADSC-based osteogenic microtissues using CEFFE and provides insights into the mechanisms underlying the enhancement of osteogenic activity. These findings hold significant implications for the field of bone tissue engineering and offer potential advancements in the clinical translation of ADSC-based therapies.
DOI: 10.17632/r4r8j6mswx
title: Data and code for "Gene-environment interactions explain a substantial portion of variability of common neuropsychiatric disorders"

description: In most complex diseases, the proportion of phenotypic variability that can be explained by interactions between genetic variation and environmental stimuli (G-by-E effects) remains unknown. In this study, we study ten major neuropsychiatric disorders using data for 138 thousand US families, with nearly half a million unique individuals. We further show that, while gene-environment interactions account for only a small portion of the total phenotypic variance for a subset of disorders (depression, adjustment disorder, substance abuse), they explain a rather large quantity of the remaining disorders: over 20% for migraine, and close to or over 30% for anxiety/phobic disorder, ADHD, recurrent headaches, sleep disorders, and PTSD. In this study, we have incorporated – in the same analysis – clinical data, family pedigrees, the spatial distribution of individuals, their socioeconomic and demographic confounders, and a comprehensive collection of raw environmental measurements.
DOI: 10.17632/wrgfdk4wxz
title: Eleições

description: Data and R procedures of Composition of Probabilistic Preferences in Modeling Elections
DOI: 10.17632/34bjrk4xxj
title: Effect of MgO content in Fe/MgO soft magnetic composites on structure (LOM images)

description: Collection of LOM images obtained from the soft magnetic composites Fe/MgO with different MgO content. More details can be found in Samples descriptin.txt and Details of structure analysis.txt files.
DOI: 10.17632/4jv2wmwrc5
title: Cardano Throughput and Stake Pool Sizes

description: Context: This data set contains information on the load and the number of active stake pools on the Cardano proof-of-stake blockchain platform between 29/07/2020 and 07/08/2021. The information was extracted from Cardano using the Cardano DB Sync tool. Content: - `date`: The date the measurements refer to - `avg_tps`: The average transactions per second observed during the 24 hour period - `cumulative_added`: The total cumulative number of stake pools added during this period and all previous periods - `cumulative_removed`: The total cumulative number of stake pools removed during this period and all previous periods - `total`: The total number of stake pools active during this period
DOI: 10.17632/4vgwk6b6ht
title: Analytical solutions to VBI system for non-simply supported boundary conditions

description: Matlab codes developed to calculate vehicle and bridge responses (displacement, velocity, and acceleration) for a theoretical vehicle bridge interaction (VBI) system for non-simply supported boundary conditions including both ends fixed, fixed simply supported, and one end fixed the other end free (cantilever) boundary condition. Both the vehicle and bridge damping effects and multiple bridge vibration modes are considered. Hypothesis: Multiple bridge dynamic information may be extracted from the vehicle that travels on it. Assumption: 1. The magnitude of the vehicle acceleration signal (gravitational direction) is negligible compared to the gravitational acceleration constant (g), say &lt;10%. Analytical solutions will be invalid if this condition is not reasonably met, say &gt;20%; 2. Uniformly distributed bridge property (mass, damping, section stiffness); 3. Vehicle travelling speed is constant. Limit: 1. Based on Bernoulli-Euler beam theory, flexure effects caused by shear forces, rotary inertial forces, and axial forces are not considered; 2. For zero initial conditions of bridge and vehicle only; 3. Other flaws may also apply, use with caution. Note: Two forms of solutions are presented for cross-checking purposes, the numerical results for vehicle and bridge are almost the same, only allow for minor differences due to truncation issue existed in numerical calculations.
DOI: 10.17632/759yn23jb9
title: Distribution and influence variables of mangrove forests and Spartina alterniflora in southeast coastal China 

description: Distribution data of mangrove forests and Spartina alterniflora  in southeastern coastal China and the variables that may affect their distribution
DOI: 10.17632/82cktyj3bk
title: Objective Assessment of Live-streaming Vs Face-to-face Teaching Method Effectiveness in Training Simple Wound Suturing Skill to Surgical Clerkship 

description: Objective Assessment of Teaching Method Effectiveness of Live-streaming Vs Face-to-face Teaching Method to Train Simple Wound Suturing Skills to Surgical Clerkship
DOI: 10.17632/8fkj2zmkfy
title: Supplementary Material-DB219 MCE towards protease inhibitors, cleavage sites of κ-CN hydrolyzed by DB219 MCE and SDS-PAGE of DB219 MCE

description: Supplementary materials belong to the article "Purification and characteristics of a novel milk-clotting metalloprotease from Bacillus velezensis DB219". The data contain DB219 MCE towards protease inhibitors, cleavage sites of κ-CN hydrolyzed by DB219 MCE and SDS-PAGE of DB219 MCE.
DOI: 10.17632/93yts3swjn
title: Data for: Severity of complications following restorative proctocolectomy in children is related to staging not diagnosis.

description: SPSS file with outcomes of restorative proctocolectomy
DOI: 10.17632/9sv5f2rchd
title: 2DH reef_lagoon_channel experiment data

description: This repository provides the experimental data required to reproduce the results presented in "Laboratory study on wave-induced setup and wave-driven current in a 2DH reef-lagoon-channel system" and "Laboratory study on wave transformation and run-up in a 2DH reef-lagoon-channel system".
DOI: 10.17632/b76v9g6j9y
title: Genetic diversity, phylogenetic position, and co-phylogenetic relationships of Karyolysus, a common blood parasite of lizards in the Western Mediterranean

description: The genus Karyolysus Labbé, 1894 was originally proposed to accommodate blood parasites of lacertid lizards in Western Europe. However, recent phylogenetic analyses suggested an inconclusive taxonomic position of these parasites of the order Adeleorina based on the available genetic information. Inconsistencies between molecular phylogeny, morphology, and/or life cycles can reflect lack of enough genetic information of the target group. We therefore surveyed 28 localities and collected blood samples from 828 lizards of 23 species including lacertids, skinks, and geckoes in the Western Mediterranean, North Africa, and Macaronesia, where species of Karyolysus and other adeleorine parasites have been described. We combined molecular and microscopic methods to analyze the samples, including those from the host type species and the type locality of Karyolysus bicapsulatus. The phylogenetic relationship of these parasites was analyzed based on the 18S rRNA gene and the co-phylogenetic relationship with their vertebrate hosts was reconstructed. We molecularly detected adeleorine parasites in 37.9% of the blood samples and found 22 new parasite haplotypes. A phylogenetic reconstruction with 132 sequences indicated that 20 of the newly detected haplotypes clustered in a well-supported clade with another 18 sequences that included Karyolysus galloti and Karyolysus lacazei. Morphological evidence also supported that Karyolysus bicapsulatus clustered in this monophyletic clade. These results supported the taxonomic validity of the genus. In addition, we found some parasite haplotypes that infected different lizard host genera with ancient diverging histories, which suggested that Karyolysus is less host-specific than other blood parasites of lizards in the region. A co-phylogenetic analysis supported this interpretation because no significant co-speciation signal was evidenced between Karyolysus and lizard hosts.
DOI: 10.17632/bb4vfjnfkf
title: Functional diagnostics using fresh uncultured lung tumor cells to guide personalized treatments

description: A DNeasy Blood & Tissue kit (Qiagen) was used to extract genomic DNA from healthy lung and tumor tissue samples and from CR cultures (Table 1). Genomic dsDNA (382-500 ng) was fragmented with a Covaris E220 evolution instrument (Covaris) to a mean fragment size of 200 base pairs (bp). For sample library preparation and enrichment, a KAPA Hyper library preparation kit was used, following the SeqCap EZ HyperCap Workflow User’s Guide Version 1.0 (Roche Nimblegen). In brief, pre-capture amplification was performed using 9 cycles, and captures were performed in multiplexes of 3 to 4 samples using 0.667-1 μg of each library. To identify somatic mutations, targeted next-generation sequencing was performed using the Illumina HiSeq2500 system in HiSeq high output mode using v4 chemistry or HiSeq Rapid run mode using v2 chemistry (Illumina), with the NimbleGen Cancer Panel to capture the exons of 578 cancer-related genes. NimbleGen probes used were 120522_HG19_Onco_R_EZ. Instead of SeqCap HE-Oligos, we used xGen Universal Blocking oligo TS mix (IDT). For post-capture amplification, ten cycles were used in two replicate reactions. The library was quantified for sequencing using the 2100 Bioanalyzer High sensitivity kit. Read length for the paired-end run was 2x101 bp. Pre-processing of short read data was done using the Trimmomatic software and included correction of the sequence data for adapter sequences, bases with low quality, and reads less than 36 bp in length. The BWA-MEM algorithm was then used to map paired-end reads passing the pre-processing onto the human reference genome build 38 (EnsEMBL v82). Finally, variants were called according to the GATK best practice for somatic short variants (version 3.5.1), supplemented with cross-sample contamination and sequencing artifact filtering. In the process, tumor samples (tissue and CR culture) were paired with their patient-matched normal samples and variant calls were filtered against a panel of normals generated from the exome data of 24 healthy unrelated Finnish individuals sequenced in-house earlier. Annotation for single nucleotide variants and short indels was performed using the Annovar tool against the RefGene database. In brief, variants called from samples were filtered for false-positives by removing variants not passing all GATK filters, residing in intronic and intergenic regions, and causing a synonymous or non-frameshift change as well as variant with a minor allele frequency ≥ 1% in the EPS, 1KG, general ExAC (ExAC), East Asian ExAC (ExAC_EAS), non-Finnish European ExAC (ExAC_NFE), Finnish ExAC (ExAC_FIN) databases, strand odd ratio for single nucleotide variants ≥ 3.00, and strand odd ratio for indels ≥ 11.00, coverage ≤ 10, and variant quality value ≤ 40. Finally, variants were removed if the variant allele frequency between the tumor and normal was &lt; 2%.
DOI: 10.17632/bk53nnj2kc
title: LINF_200016760

description: hypothetical protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/bxv6zyv2xz
title: Raw HPLC-MS/MS data for "Oxidative stress is inhibited by plant-based supplements: a quantitative lipidomic analysis of antioxidant activity and lipid compositional change"

description: Data are the raw data for our targeted lipidomics study testing the antioxidant properties of several dietary supplements derived from plant extracts against a complex lipid mixture. Five supplements were tested for antioxidant activity these contained grape seed extract, hawthorn extract, pine bark extract, milk thistle extract, and turmeric extract. Overall the data show that most of the supplements had an antioxidant effect on the phosphatidylethanolamine lipid class but grape seed extract was effective across most of the 15 lipid classes and circa 400 hundred lipid species identified. Experiments were performed using a liposomal oxidation assay with the radical peroxidation agent 2,2′-Azobis(2-methylpropionamidine) dihydrochloride (AAPH) in the presence and absence of supplement at 0, 6 and 24 hrs post oxidation initiation. Lipidomic data were obtained using high pressure liquid chromatography mass spectrometry (HPLC-MS). Reanalysis is possible using a number of metabolomic or lipidomic platforms and these data may prove useful as the field of oxidative lipidomics develops, since we were unable to reliably identify a significant number of chromatographic features.
DOI: 10.17632/cdt269pw7m
title: Cell-Fit-HD4D Matlab Codes

description: The provided Matlab codes were used to extract data from microscopy time series and LevelSetTracker for single cell tracking.
All files marked with "MC" describe Monte Carlo simulations for error estimation.
detClon: determination of cellular clonality from LevelSetTracker-derived analyses matrices
detPot: determination of proliferative potential of single cells from LevelSetTracker-derived analyses matrices
division: Uses LevelSetTracker-generated files for determination of cell clonogenicity and basic cell division trees
IntranuclearHits_MC: Error estimation of hit determination for single cells via Mone Carlo Simulation
IntranuclearHits_and_Dose_MC: Error estimation of hit and dose determination for single cells via Mone Carlo Simulation
RIF_in_individual_cells: Save and extraction of RIF number of single cells at single time points
RIFinCell: Class representing a single cell with RIF number  at a single time point
RIFinCelloverT: Class representing a single cell containing its RIF kinetics over time
searchDiv: Searches and connects mother cells to daughter cells within a matrix
searchPot: Searches for second generation daughter cells and by that calculates division potential of a given cell
DOI: 10.17632/cm8ddthj2k
title: Supporting data for manuscript "Late Paleozoic southward migration of the Dananhu arc in the Eastern Tianshan (NW China)"

description: The data are the supporting information (SI.) for the manuscript “Late Paleozoic southward migration of the Dananhu arc in the Eastern Tianshan (NW China)”. They contain:
1. SI. Analytical methods: contain the zircon U-Pb dating, zircon Lu-Hf analyses, major element and trace element experiments, and Sr-Nd isotopic analyses analytical methods.
2. SI. Table 1 “Zircon U-Pb ages of granites in the Dananhu arc in eastern Tianshan orogen, NW China” is U-Pb dating results of granitic rocks at the Kezier (K), Tuwu (Y) and Kanguer area (N) in the Dananhu arc. They reveal that granitic magmas became younger southwards in the growing Dananhu arc from 401-335 Ma in the Kezier area, to 334-315 Ma in the Tuwu area, and finally to 279-254 Ma in the Kanguer accretionary belt.
3. SI. Table 2 “The major (wt%), trace element (ppm) data of granites in the Dananhu arc in the eastern Tianshan orogen, NW China.” is the geochemical results of granitic rocks at the Kezier (K), Tuwu (Y) and Kanguer area (N) in the Dananhu arc. These granitic rocks include I-type granites, A-type granites, and adakite-like granites. The I-type granites (401-270 Ma) were generated by partial melting of juvenile intermediate or mafic crust. The A2-type granites (K7, 356 Ma) were products of strong fractional crystallization of mantle-derived magmas in an extensional setting. The Late Permian adakite-like granite (N8, 254 Ma) was derived from a depleted subducted oceanic slab.
4. SI. Table 3 “Zircon Lu-Hf isotopic data of granites in the Dananhu arc in the eastern Tianshan orogen, NW China.” is the zircon Lu-Hf isotopic results of the Kezier (K), Tuwu (Y) and Kanguer area (N) in the Dananhu arc. These crust-derived granitic rocks have relatively high positive zircons εHf(t) (+7.7-+19.6) values and young model age, suggesting that the Dananhu arc was a juvenile accretionary arc.
5. SI. Table 4 “Summary of published zircons ages of mafic-ultramific and granitic intrusions in the Dananhu arc.” is the published zircons ages of Devonian to Permian granitic intrusions at the Kezier (K), Tuwu (Y) and Kanguer area (N), and the early Permian mafic-ultramific complex in the Dananhu arc. The granitic rocks are younging southward from Kezier area, to Tuwu area and Kanguer accretionary complex. The early Permian mafic-ultramific complex emplaced in the Dananhu arc.
DOI: 10.17632/d75gn9zb7t
title: SUMARY OEE SEPTEMBER-NOVEMBER

description: The data in this datasets are used to analyze machine performance
DOI: 10.17632/fvzm88tm3v
title: NSD1 mediates antagonism between SWI/SNF and Polycomb complexes and is required for transcriptional activation upon EZH2 inhibition

description: Uncropped immunoblots for manuscript: NSD1 mediates antagonism between SWI/SNF and Polycomb complexes and is required for transcriptional activation upon EZH2 inhibition.