cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7488/ds/2529
title: On the chain-melted phase of matter

description: Various single elements form incommensurate crystal structures under pressure, where a zeolite-type “host” sublattice surrounds a “guest” sublattice comprising 1D chains of atoms. On “chain melting,” diffraction peaks from the guest sublattice vanish, while those from the host remain. Diffusion of the guest atoms is expected to be confined to the channels in the host sublattice, which suggests 1D melting. Here, we present atomistic simulations of potassium to investigate this phenomenon and demonstrate that the chain-melted phase has no long-ranged order either along or between the chains. This 3D disorder provides the extensive entropy necessary to make the chain melt a true thermodynamic phase of matter, yet with the unique property that diffusion remains confined to 1D only. Calculations necessitated the development of an interatomic forcefield using machine learning, which we show fully reproduces potassium’s phase diagram, including the chain-melted state and 14 known phase transitions.
description: See README.txt.
DOI: 10.7488/ds/2777
title: SUPERSEDED - Medication-wide association study of dementia
title: Environment-wide association study of dementia

description: ## This item has been replaced by the one which can be found at https://datashare.is.ed.ac.uk/handle/10283/3792 ## Dataset from medication-wide association study of dementia, using the Secure Anonymised Information Linkage databank Dementia electronic Cohort (SAIL-DeC). This dataset contains the hazard ratios and p-values for all medications included in the analysis (744 drugs in total). These results are from the full study population (n=551,344), of whom 16,998 developed dementia during follow-up. Numbers &lt;10 have been masked to preserve de-identification of study participants.
description: results.csv - full results read me
DOI: 10.7488/ds/2426
title: Border Collie array data for 58 dogs from Illumina 170k CanineHD BeadChip
title: Arginine to glutamine mutation in olfactomedin-like 3 (OLFML3) is a candidate for severe goniodysgenesis and glaucoma in the Border Collie dog breed.

description: Goniodysgenesis is a developmental abnormality of the anterior chamber of the eye. It is generally considered to be congenital in dogs (Canis lupus familiaris), and has been associated with glaucoma and blindness. Goniodysgenesis and early-onset glaucoma initially emerged in Border Collies in Australia in the late 1990s and has subsequently been found in Europe and the USA. The objective of the present study was to determine the genetic basis of goniodysgenesis in Border Collies. Clinical diagnosis was based on results of examinations by veterinary ophthalmologists of affected and unaffected dogs from eleven different countries. Genotyping using the Illumina high density canine SNP chip and whole genome sequencing were used to identify candidate genetic regions. Expression profiles and evolutionary conservation of candidate genes were assessed using public databases. Analysis of pedigree information was consistent with an autosomal recessive mode of inheritance for severe goniodysgenesis (potentially leading to glaucoma) in this breed. There was a highly significant peak of association over chromosome 17, with a p-value of 2 x 10-13. Whole genome sequences of three dogs with glaucoma, three severely affected and three unaffected dogs identified a missense variant in the olfactomedin like 3 (OLFML3) gene in all six affected animals. This was homozygous in all nine cases with glaucoma and 12 of 14 other severely affected animals. Of 67 reportedly unaffected animals, only one (offspring of two homozygous affected parents) was homozygous for this variant. The identification of a candidate genetic region and putative causative mutation will aid breeders to reduce the frequency of goniodysgenesis and the risk of glaucoma in the Border Collie population.
description: The data comprise genotype data for 58 Border Collies, genotyped using the Illumina 170k CanineHD BeadChip. More details are given in the associated readme.txt file
DOI: 10.7488/ds/270
title: Yati Durant and Christian Svalesen 13.03.2015 mix 1

description: Initial attempts at spontaneous composition. Two players facing each other. No usage of screen elements in order to develop musical communication language. Setup included Laptop running Ableton Live, Korg Kaoss pad, Korg MS-20 with SQ-1 and Elektron Machinedrum and two trumpets (through effects).
DOI: 10.7488/ds/2610
title: Nucleosome positions alone can be used to predict domains in yeast chromosomes

description: Simulation data related to the project "Nucleosome positions alone can be used to predict domains in yeast chromosomes". DNA is packaged into chromosomes, which are further organized into domains: Regions of the genome which are more likely to self-interact. Domains have been observed in species ranging from bacteria to humans and are thought to play an important role in gene regulation. Yet the mechanisms of domain formation are not fully understood. Here we use computer simulations to investigate domain formation in yeast. Our model reproduces the experimentally observed domains using only nucleosome positioning information as an input, implying that (unlike in higher eukaryotes) domain boundary locations are largely determined at this level. Our results reveal how irregular nucleosome spacing impacts the 3D chromosome organization, pointing to a direct link between nucleosome positioning and genome regulation at the large scale.
description: This deposit includes the source data for all figures in the publication. Simulations were performed using the LAMMPS molecular dynamics software; the full set of LAMMPS output trajectories used in the paper are included. Example LAMMPS initial condition and input scripts are included. LAMMPS version 31Mar17 was used. Experimental data used in the work was previously published elsewhere. Full details are given in the README file.
DOI: 10.7488/ds/2558
title: "Davies2018_OPEN_DATASET_summary_results.txt" - Data supporting paper Davies et al. "Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function."

description: Data supporting paper Davies et al "Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function." Nature Communications DOI: 10.1038/s41467-018-04362-x . Open dataset summary results (5 cohorts removed; details in README) ; General Cognitive Function N = 282,014. ## Note re working with data ## The file "Davies2018_OPEN_DATASET_summary_results.txt" contains over twelve million rows. Users will encounter difficulties if they attempt to view the content using Notepad++ or Microsoft Notepad. Microsoft Excel 2016 will not display all rows. This space-delimited text file contains seven columns, with a header row, which are listed in the readme file. ## Note re other copy ## The file "Davies2018_OPEN_DATASET_summary_results.txt" is identical to the file of the same name previously made available on the website of the Centre for Cognitive Ageing and Cognitive Epidemiology (CCACE) http://www.ccace.ed.ac.uk/node/335 as part of the zip archive "Davies_NC_2018_OPEN_DATASET.zip" .
DOI: 10.7488/ds/2617
title: Liquid Migration in Shear Thickening Suspensions Flowing through Constrictions

description: Dense suspensions often become more dilute as they move downstream through a constriction. We find that as a shear-thickening suspension is extruded through a narrow die and undergoes such liquid migration, the extrudate maintains a steady concentration, independent of time or initial concentration. At low volumetric flow rate Q, this concentration is a universal function of Q/r^3, a characteristic shear rate in the die of radius r, and coincides with the critical input concentration for the onset of liquid migration. We predict this function by coupling the Wyart-Cates model for shear thickening and the 'suspension balance model' for solvent permeation through particles.
description: The dataset comprises 5 .zip files which contain tab-delimited .csv data files and Python scripts for Figures 1-5 from the main text. A readme file with a description of the data relating to each figure is included inside each of the relevant .zip files.
DOI: 10.7488/ds/2479
title: Facile Synthesis and Characterization of Bi13S18I2 Films as a Stable Supercapacitor Electrode Material

description: Electrical double layer capacitors (EDLCs) featuring low-cost and solution-processable electrode materials have attracted significant research interest for their green and economical applications in energy harvesting and storage devices. Here, we demonstrate a novel synthetic route for films of an underexplored 3-D hexagonal bismuth chalcohalide, Bi13S18I2, and investigate its potential as the active electrode material in EDLC-type supercapacitors. The synthetic procedure has been optimised and comprises the lowest annealing temperature (150°C) and the shortest processing time (1 h) currently reported. When integrated in a symmetrical EDLC with an aqueous NaClO4 electrolyte, the Bi13S18I2-based device achieves a remarkable areal capacitance of 210.68 mF cm-2 with 99.7% capacitance retention after 5000 cycles. Both the Bi13S18I2 powder and thin-film electrodes have been characterized through XRD, XPS, Raman spectroscopy, and SEM. The superior stability, low-cost, and facile synthesis of Bi13S18I2 proves its promising potential for supercapacitor applications.
DOI: 10.7488/ds/2427
title: Multiscale simulation of water flow through laboratory-scale nanotube membranes

description: This data folder contains the output data from all molecular dynamics simulations carried out in this paper.
DOI: 10.7488/ds/2539
title: Supplementary data to "Ligand binding site structure shapes folding, assembly and degradation of homomeric protein complexes" by G. Abrusan and J.A. Marsh

description: The structure of ligand binding sites has profound consequences for the evolution of function of protein complexes, particularly in homomers. Homomers with multichain binding sites (MBS) are characterized with more conserved binding sites and quaternary structure, and qualitatively different allosteric pathways than homomers with singlechain binding sites (SBS) or monomers. Here we show that 1) MBS homomers have significantly more long-range residue-residue interactions than SBS homomers or monomers, indicating that they have more complex folds and are more prone for misfolding; 2) In humans the interactome of MBS homomers is enriched in proteins that aid folding and assembly, including chaperones and chaperonins; 3) The sequences and structures of MBS and SBS homomers show qualitatively different distributions of frustrated residues, aggregation prone regions and interface residues, indicating that their interactions with the proteostasis network are different, and suggesting that SBS homomers are folded and assembled cotranslationally, while MBS homomers are not, and rely on more advanced folding-assistance and quality control mechanisms by chaperones and chaperonins.
DOI: 10.7488/ds/264
title: Yati Durant and Christian Svalesen w/Häxan 04.05.2015 mix 1

description: Third attempt at spontaneous composition for screen with Häxan (up to Part 2, 1922, Benjamin Christensen), both are facing the screen (and sound source), attempt to improve reactivity through development of a graphic score/visual cue sheet (not musical material), discuss reactivity beforehand including “points” of reactivity, some points of setup were changed including utilization of new sample sets (Samplr, etc.). The improvisation process followed Method 2: “Look first at the film in its entirety, with or without sound, create and study preparatory material together, such as a cue sheet. Then talk about how it will be played and establish limitations ahead of the first try. Then play and talk about the outcome.” (Durant, Yati. 2015. Dramatic Comprehensibility in Improvised Music to Film. [Paper]. IMHSD Conference, Herstmonceux Castle, East Sussex) Setup included Laptop running Ableton Live, Korg Kaoss pad and Kaosillator through ZVex, Korg MS-20 and SQ1, Apple iPad running Samplr, Elektron Machinedrum and two trumpets (through effects).
DOI: 10.7488/ds/1788
title: SRTM data for south Loch Lomond and Glasgow

description: Shuttle Radar Topography Mission (SRTM) data is comprised of surface elevation. The 'raw' data is visually not very useful; various quantitative measures have been extracted from this data and a relief shaded image has been generated. Digital Terrain Model. This dataset was first accessioned in the EDINA ShareGeo Open repository on 2010-06-30 and migrated to Edinburgh DataShare on 2017-02-21.
description: ERDAS Imagine
DOI: 10.7488/ds/249
title: Thermodynamics of the Stockmayer fluid in an applied field

description: These files contain original simulation data for Figures 1-6, and Figure 8: virial coefficients are from Mayer-sampling simulations; equations of state are from molecular dynamics simulations. All theoretical lines can be generated from the formulas given in the paper.
description: README.txt
DOI: 10.7488/ds/265
title: Yati Durant and Christian Svalesen w/Häxan 27.04.2015 2 mix 2

description: Second attempt at spontaneous composition for screen with Häxen (up to Part 2, 1922, Benjamin Christensen), attempt to simplify “flow”, improve reactivity, balance and tempo, search for expression. The improvisation process followed approximately Method 1: “look first at the film in its entirety first, with or without sound (preferable, as it doesn’t then imply simple musical mimicking) then improvise and talk about the outcome.” (Durant, Yati. 2015. Dramatic Comprehensibility in Improvised Music to Film. [Paper]. IMHSD Conference, Herstmonceux Castle, East Sussex) Setup included Laptop running Ableton Live, Korg Kaoss pad and Kaosillator through ZVex, Korg MS-20 and SQ1, Apple iPad running Samplr, Elektron Machinedrum and two trumpets (through effects).
DOI: 10.7488/ds/268
title: Yati Durant and Christian Svalesen 30.03.2015 mix 1

description: Continuing attempts at spontaneous composition. Two players facing each other. No usage of screen elements in order to develop musical communication language. Setup included Laptop running Ableton Live, Korg Kaoss pad and Kaosillator through ZVex, Korg MS-20 and SQ1, Apple iPad running Samplr, Elektron Machinedrum and two trumpets (through effects).
DOI: 10.7488/ds/2738
title: Old College Courtyard

description: A Scan of University of Edinburgh Old College Courtyard, 38 Scan locations, captured with a BLK 360, registered using Autodesk Recap Pro, exported to .e57 file format.
DOI: 10.7488/ds/2733
title: ECA Glass Workshop

description: A Scan of Edinburgh College of Art Glass Workshop, 12 Scan locations, captured with a BLK 360, registered using Autodesk Recap Pro, exported to .e57 file format.
DOI: 10.7488/ds/267
title: Yati Durant and Christian Svalesen 06.04.2015 mix 1

description: Continuing attempts at spontaneous composition. Two players facing each other. No usage of screen elements in order to develop musical communication language. Setup included Laptop running Ableton Live, Korg Kaoss pad and Kaosillator through ZVex, Korg MS-20 and SQ1, Apple iPad running Samplr, Elektron Machinedrum and two trumpets (through effects).
DOI: 10.7488/ds/271
title: Yati Durant and Christian Svalesen 16.03.2015 mix 1

description: Initial attempts at spontaneous composition. Two players facing each other. No usage of screen elements in order to develop musical communication language. Setup included Laptop running Ableton Live, Korg Kaoss pad, Korg MS-20 with SQ-1 and Elektron Machinedrum and two trumpets (through effects).
DOI: 10.7488/ds/2767
title: Fire in Cape Town informal settlements mapped from remote sensing

description: This data was created from a remote sensing method using Sentinel 2 data originally described in: Gibson, L., Engelbrecht, J. & Rush, D. Detecting historic informal settlement fires with Sentinel 1 and 2 satellite data - Two case studies in Cape Town. Fire Safety Journal (2019). https://doi.org/10.1016/j.firesaf.2019.102828. Compilation of this dataset is described in Gibson et al (in preparation). Towards understanding the influence of wind and the spatial layout of dwellings on fire spread in informal settlements in Cape Town. The geographic data is in shapefile format (map projection WGS84, TM 19) with the following fields: Shape_length: perimeter (m) of polygon Shape_Area: area (m2) of polygon Burn_ID: Unique ID given to each individual fire. Closest_da: The closest date at which the fire is confirmed to have occurred. Read together with Field "Comment". Incident_n: Where possible, the fire was matched against fires recorded in the City of Cape Town fire incident database, found here: https://web1.capetown.gov.za/web1/OpenDataPortal/DatasetDetail?DatasetName=Fire%20incidence Comment: Source of validation, either the City of Cape Town fire incidence database, media reports where by the location and size of the fire, a link could be established, Historic Google Earth imagery where by scrolling through historic imagery, the presence of a fire could be detected.
DOI: 10.7488/ds/2410
title: Chaotic behaviour of Eulerian MHD turbulence

description: We study the chaos of a turbulent conducting fluid using direct numerical simulation in the Eulerian frame. We predict that the Lyapunov exponent, which measures the exponential separation of initially close solutions of the magnetohydrodynamic equations, is proportional to the inverse of the Kolmogorov microscale time and also obtain new results for this relation in hydrodynamic turbulence, specifically deriving a previously unknown co-efficient. These predictions agree with simulation results. The simulations also show a diminution of chaos from the introduction of magnetic helicity, which is expected to be eliminated at maximum helicity. Linear growth of the difference between fields was recently found in hydrodynamics and we find here that it extends to the magnetic and velocity fields, with growth rates dependent on the dissipation rate of the relevant field. We infer that the chaos in the system is totally dominated by the velocity field and connect this work to real magnetic systems such as solar weather and confined plasmas.
description: readme.txt
DOI: 10.7488/ds/2536
title: Data reported in Jasmeen Kanwal's PhD Thesis Chapter 3

description: This is data from the two experiments reported in Chapter 3 ("Word length and predictability in context") of my University of Edinburgh PhD thesis (https://www.era.lib.ed.ac.uk/handle/1842/33051). The experiments are also reported in a manuscript for journal submission, entitled "Information content affects word length in an artificial language communication task".
description: Exp1_data_combined - Data from the Combined condition of Experiment 1; Exp1_data_accuracy - Data from the Accuracy condition of Experiment 1; Exp1_data_time - Data from the Time condition of Experiment 1; Exp1_data_neither - Data from the Neither condition of Experiment 1; Exp2_data - Data from Experiment 2; readme.txt - Explanation of column headers;
DOI: 10.7488/ds/263
title: Yati Durant, Christian Svalesen and Jack Weir w/Mclaren 13.05.2015 mix 1

description: Spontaneous composition for screen with McLaren (Experimental footage). First attempt with inclusive guitar (+effects). The film was selected at random without prior knowledge of its content, short discussion about interaction and reactivity beforehand. Improvisation process followed Method 3: “Go ahead and play from the beginning with the film, without any cue sheet or background. Play and talk about the outcome.” (Durant, Yati. 2015. Dramatic Comprehensibility in Improvised Music to Film. [Paper]. IMHSD Conference, Herstmonceux Castle, East Sussex) Setup included Laptop running Ableton Live, Korg Kaoss pad and Kaosillator through ZVex, Korg MS-20 and SQ1, Apple iPad running Samplr, Elektron Machinedrum and two trumpets (through effects), guitar with various effects pedals.
DOI: 10.7488/ds/2577
title: A Decade of Weather – a serious game to understand cascading climate change impacts

description: This dataset provides all the material to play "A Decade of Weather", a serious game to understand multiple hazards and risk from climate change on interdependent infrastructure. The game was developed through a co-creation process between inter-disciplinary climate researchers from the University of Edinburgh and adaptation stakeholders as part of a NERC-funded project run in late 2017/early 2018. The co-creation process and insights from the facilitated discussion while playing the game are described in the following research paper: S. Undorf, S. F. B. Tett, J. Hagg, M. J. Metzger, G. Edmond, M. Jacques-Turner, S. Forrest, and M. Shoote, Understanding interdependent climate change risks using a serious game, Bulletin of the American Meteorological Society (BAMS), submitted in 2019 [under review].
description: This dataset contains: - facilitation_plan.pdf - note_template.odt - game_intro_slides.pdf - game_rules.pdf - damage_tokens.pdf - documentation_booklet.pdf - game_board.pdf - graphics.zip - methodology.pdf - satisfaction.pdf - scenarios.pdf - weather_calendar.pdf - Adobe_ai_graphic_files.zip - svg_graphic_files.zip
DOI: 10.7488/ds/266
title: Yati Durant and Christian Svalesen w/Häxan 13.04.2015 mix 1

description: First attempt at spontaneous composition for screen with Häxan (up to Part 2, 1922, Benjamin Christensen), attempt to experiment with “letting the film do the hard work” utilizing simple and direct processes. The improvisation process followed between Method 4: “don’t rehearse at all and play at first sight at the performance” and Method 5: “don’t look at the film at all before, during or after the performance and simply improvise.” (Durant, Yati. 2015. Dramatic Comprehensibility in Improvised Music to Film. [Paper]. IMHSD Conference, Herstmonceux Castle, East Sussex) Film not previously watched, no discussion or rules established beforehand, no specific intention to follow the film. Setup included Laptop running Ableton Live, Korg Kaoss pad and Kaosillator through ZVex, Korg MS-20 and SQ1, Apple iPad running Samplr, Elektron Machinedrum and two trumpets (through effects).
DOI: 10.7488/ds/2528
title: SUPERSEDED - ManySStuBs4J Dataset

description: ## This item has been replaced by the one which can be found at https://doi.org/10.7488/ds/2628 ## The ManySStuBs4J corpus contains simple statement bugs mined from open-source Java projects hosted in GitHub. There are two variations of the dataset. One mined from the 100 Java Maven Projects and one mined from the top 1000 Java Projects. A project's popularity is determined by computing the sum of z-scores of its forks and watchers. See "README.txt" for further details.
DOI: 10.7488/ds/2783
title: Site-selective doping of ordered charge states in magnetite

description: cif (Crystallographic Information File) files for the 3 single crystal analyses in this study. Crystal 1 - xtal6_final.cif Crystal 2 - ep38_dp01_x7_fc_fsxmia2RE.cif Crystal 3 - best_r.cif
DOI: 10.7488/ds/269
title: Yati Durant and Christian Svalesen 27.03.2015 mix 1

description: Initial attempts at spontaneous composition. Two players facing each other. No usage of screen elements in order to develop musical communication language. Setup included Laptop running Ableton Live, Korg Kaoss pad, Korg MS-20 with SQ-1 and Elektron Machinedrum and two trumpets (through effects), additional sampling added through using an Apple iPad with Samplr.