cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13559950
title: Additional file 10 of JOINT for large-scale single-cell RNA-sequencing analysis via soft-clustering and parallel computing

description: Additional file 10: Table S2. Comparison of computing time when JOINT is run on GPU vs. CPU.
DOI: 10.34808/fm4x-mk62
title: Thermographic imaging of electrochemical double layer capacitors during cycling charging - discharging 0 - 2,5 V at 241 mA. Sample 24

description: Dataset contains thermal images of prototype electrochemical double layer capacitor taken during cyclic charging - discharging. The sample was charged to 2,5 V and discharged to 10 mV by constant current 241 mA. The images were taken with thermographic camera VigoCAM V50. The sample was covered by black graphite paint to ensure uniform surface emission. For sample charging and discharging the ATLAS 1361 MPG&T was used.The sample is in a form of triplex envelope (6 cm x 7 cm) with active structure (2,5 cm x 4 cm) inside and electrodes contacts at one of envelope edge.The ASCII text data file consists of images acquired within a fixed period of measurement, T = 60 sec. The recorded image is a matrix containing 388 x 288 temperature data. Each image is preceded with header with image number, date and time of acquisition.
DOI: 10.6084/m9.figshare.13559977
title: Additional file 9 of JOINT for large-scale single-cell RNA-sequencing analysis via soft-clustering and parallel computing

description: Additional file 9: Table S1. Comparison of clustering performance for JOINT and published imputation algorithms on a simulated dataset.
DOI: 10.6084/m9.figshare.13559977.v1
title: Additional file 9 of JOINT for large-scale single-cell RNA-sequencing analysis via soft-clustering and parallel computing

description: Additional file 9: Table S1. Comparison of clustering performance for JOINT and published imputation algorithms on a simulated dataset.
DOI: 10.34808/ywcp-9941
title: Thermographic imaging of electrochemical double layer capacitors during cycling charging - discharging 0 - 2,5 V at 301 mA. Sample 24

description: Dataset contains thermal images of prototype electrochemical double layer capacitor taken during cyclic charging - discharging. The sample was charged to 2,5 V and discharged to 10 mV by constant current 301 mA. The images were taken with thermographic camera VigoCAM V50. The sample was covered by black graphite paint to ensure uniform surface emission. For sample charging and discharging the ATLAS 1361 MPG&T was used.The sample is in a form of triplex envelope (6 cm x 7 cm) with active structure (2,5 cm x 4 cm) inside and electrodes contacts at one of envelope edge.The ASCII text data file consists of images acquired within a fixed period of measurement, T = 60 sec. The recorded image is a matrix containing 388 x 288 temperature data. Each image is preceded with header with image number, date and time of acquisition.
DOI: 10.6084/m9.figshare.14432798
title: Additional file 1 of Long-term outcomes of tracheal stents removal under fluoroscopy guidance: comparison of tracheal fistulas and tracheal stenosis

description: Additional file 1: Video 1. Stent removal for straight tracheal stent.
DOI: 10.6084/m9.figshare.14432801
title: Additional file 2 of Long-term outcomes of tracheal stents removal under fluoroscopy guidance: comparison of tracheal fistulas and tracheal stenosis

description: Additional file 2: Video 2. Stent removal for Y-type tracheal stent.
DOI: 10.6084/m9.figshare.14432801.v1
title: Additional file 2 of Long-term outcomes of tracheal stents removal under fluoroscopy guidance: comparison of tracheal fistulas and tracheal stenosis

description: Additional file 2: Video 2. Stent removal for Y-type tracheal stent.
DOI: 10.6084/m9.figshare.14432798.v1
title: Additional file 1 of Long-term outcomes of tracheal stents removal under fluoroscopy guidance: comparison of tracheal fistulas and tracheal stenosis

description: Additional file 1: Video 1. Stent removal for straight tracheal stent.
DOI: 10.6084/m9.figshare.14432918
title: Additional file of EGFR inhibitors switch keratinocytes from a proliferative to a differentiative phenotype affecting epidermal development and barrier function

description: Additional file of EGFR inhibitors switch keratinocytes from a proliferative to a differentiative phenotype affecting epidermal development and barrier function
DOI: 10.6084/m9.figshare.14432918.v1
title: Additional file of EGFR inhibitors switch keratinocytes from a proliferative to a differentiative phenotype affecting epidermal development and barrier function

description: Additional file of EGFR inhibitors switch keratinocytes from a proliferative to a differentiative phenotype affecting epidermal development and barrier function
DOI: 10.6084/m9.figshare.14432945.v1
title: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries

description: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries
DOI: 10.6084/m9.figshare.14432945.v2
title: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries

description: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries
DOI: 10.6084/m9.figshare.14432945.v3
title: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries

description: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries
DOI: 10.6084/m9.figshare.14432945.v4
title: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries

description: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries
DOI: 10.6084/m9.figshare.14432945.v5
title: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries

description: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries
DOI: 10.6084/m9.figshare.14432945.v7
title: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries

description: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries
DOI: 10.6084/m9.figshare.14432945
title: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries

description: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries
DOI: 10.6084/m9.figshare.14432945.v6
title: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries

description: Additional file of Development of the Global Network for Women’s and Children’s Health Research’s socioeconomic status index for use in the network’s sites in low and lower middle-income countries
DOI: 10.6084/m9.figshare.14432987
title: Additional file 1 of Overexpression of AtAHL20 causes delayed flowering in Arabidopsis via repression of FT expression

description: Additional file 1: Data S1. RNA-Seq data of genes down-regulated in 35S:AtAHL20 versus the Col-0 wild type. Data S2. RNA-Seq data of genes up-regulated in 35S:AtAHL20 versus the Col-0 wild type.
DOI: 10.6084/m9.figshare.14432987.v1
title: Additional file 1 of Overexpression of AtAHL20 causes delayed flowering in Arabidopsis via repression of FT expression

description: Additional file 1: Data S1. RNA-Seq data of genes down-regulated in 35S:AtAHL20 versus the Col-0 wild type. Data S2. RNA-Seq data of genes up-regulated in 35S:AtAHL20 versus the Col-0 wild type.
DOI: 10.6084/m9.figshare.14433011
title: Additional file 10 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 10: Supplemental_Table_S9. The genomic piRNA clusters.
DOI: 10.6084/m9.figshare.14433011.v1
title: Additional file 10 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 10: Supplemental_Table_S9. The genomic piRNA clusters.
DOI: 10.6084/m9.figshare.14433014
title: Additional file 11 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 11: Supplemental_Table_S10. The expression profile of miRNAs.
DOI: 10.6084/m9.figshare.14433014.v1
title: Additional file 11 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 11: Supplemental_Table_S10. The expression profile of miRNAs.
DOI: 10.6084/m9.figshare.14433017
title: Additional file 12 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 12: Supplemental_Table_S11. The expression profile of tRFs.
DOI: 10.6084/m9.figshare.14433017.v1
title: Additional file 12 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 12: Supplemental_Table_S11. The expression profile of tRFs.
DOI: 10.6084/m9.figshare.14433020
title: Additional file 13 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 13: Supplemental_Table_S12. The reference sequences for tRNA.
DOI: 10.6084/m9.figshare.14433020.v1
title: Additional file 13 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 13: Supplemental_Table_S12. The reference sequences for tRNA.
DOI: 10.6084/m9.figshare.14433023
title: Additional file 14 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 14: Supplemental_Table_S13. The reference sequences for rRNA.
DOI: 10.6084/m9.figshare.14433026.v1
title: Additional file 15 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 15: Supplemental_Table_S14. RepeatMasker as well as WindowMasker for the annotation of repetitive DNA.
DOI: 10.6084/m9.figshare.14433023.v1
title: Additional file 14 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 14: Supplemental_Table_S13. The reference sequences for rRNA.
DOI: 10.6084/m9.figshare.14433035
title: Additional file 2 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 2: Supplemental_Table_S1. The identified 36 miRNA genes with ShortStack.
DOI: 10.6084/m9.figshare.14433026
title: Additional file 15 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 15: Supplemental_Table_S14. RepeatMasker as well as WindowMasker for the annotation of repetitive DNA.
DOI: 10.6084/m9.figshare.14433029.v1
title: Additional file of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica
DOI: 10.6084/m9.figshare.14433035.v1
title: Additional file 2 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 2: Supplemental_Table_S1. The identified 36 miRNA genes with ShortStack.
DOI: 10.6084/m9.figshare.14433038.v1
title: Additional file 3 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 3: Supplemental_Table_S2. The enrichment of specific GO terms assigned to the putative targets of the novel miRNAs.
DOI: 10.6084/m9.figshare.14433041
title: Additional file 4 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 4: Supplemental_Table_S3. The annotation results of small RNAs using the unitas annotation pipeline.
DOI: 10.6084/m9.figshare.14433047.v1
title: Additional file 6 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 6: Supplemental_Table_S5. Share of reads with 5′ U (1 U) within the fraction of reads that did not match any other class of coding or non-coding RNA.
DOI: 10.6084/m9.figshare.14433038
title: Additional file 3 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 3: Supplemental_Table_S2. The enrichment of specific GO terms assigned to the putative targets of the novel miRNAs.
DOI: 10.6084/m9.figshare.14433041.v1
title: Additional file 4 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 4: Supplemental_Table_S3. The annotation results of small RNAs using the unitas annotation pipeline.
DOI: 10.6084/m9.figshare.14433047
title: Additional file 6 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 6: Supplemental_Table_S5. Share of reads with 5′ U (1 U) within the fraction of reads that did not match any other class of coding or non-coding RNA.
DOI: 10.6084/m9.figshare.14433050.v1
title: Additional file 7 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 7: Supplemental_Table_S6. The sub-fraction of repeat derived sequence reads.
DOI: 10.6084/m9.figshare.14433053
title: Additional file 8 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 8: Supplemental_Table_S7. The number of read pairs with 10 nt 5′ overlap.
DOI: 10.6084/m9.figshare.14433044
title: Additional file 5 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 5: Supplemental_Table_S4. The length distribution of small RNAs.
DOI: 10.6084/m9.figshare.14433044.v1
title: Additional file 5 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 5: Supplemental_Table_S4. The length distribution of small RNAs.
DOI: 10.6084/m9.figshare.14433056.v1
title: Additional file 9 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 9: Supplemental_Table_S8. The size of sequence reads that form ping-pong pairs.
DOI: 10.6084/m9.figshare.14433050
title: Additional file 7 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 7: Supplemental_Table_S6. The sub-fraction of repeat derived sequence reads.
DOI: 10.6084/m9.figshare.14433056
title: Additional file 9 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 9: Supplemental_Table_S8. The size of sequence reads that form ping-pong pairs.
DOI: 10.6084/m9.figshare.14433053.v1
title: Additional file 8 of Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica

description: Additional file 8: Supplemental_Table_S7. The number of read pairs with 10 nt 5′ overlap.
DOI: 10.6084/m9.figshare.14433200
title: Additional file 2 of Systemic paralogy and function of retinal determination network homologs in arachnids

description: Additional file 2. Table S3: Subset of enriched GO terms that have eye-related ontology for Comparison 1, Comparison 2.1, and Comparison 2.2. Each spreadsheet is accompanied by the Trinotate annotation report of the differentially expressed genes in the enriched eye-related GO terms. GO enrichment analyses absent from this file do not have eye-related GO terms enriched. For the full GOseq results for each comparison see Additional file 6, Dataset S3. (.xlsx)
DOI: 10.6084/m9.figshare.14433200.v1
title: Additional file 2 of Systemic paralogy and function of retinal determination network homologs in arachnids

description: Additional file 2. Table S3: Subset of enriched GO terms that have eye-related ontology for Comparison 1, Comparison 2.1, and Comparison 2.2. Each spreadsheet is accompanied by the Trinotate annotation report of the differentially expressed genes in the enriched eye-related GO terms. GO enrichment analyses absent from this file do not have eye-related GO terms enriched. For the full GOseq results for each comparison see Additional file 6, Dataset S3. (.xlsx)
DOI: 10.6084/m9.figshare.14433206
title: Additional file 3 of Systemic paralogy and function of retinal determination network homologs in arachnids

description: Additional file 3: Video S1: Time-lapse imaging of a postembryo ~ 24 h after hatching of Parasteatoda tepidariorum from the dH2O-injected treatment (negative control). Pictures were taken every 30 min, in a room at 22 °C. Normal molting time after hatching is ~ 48 h at 26 °C. Video S2: Time-lapse imaging of a postembryo ~ 24 h after hatching of Parasteatoda tepidariorum from the Ptep-soA-injected treatment. Pictures were taken every 30 min, in a room at 22 °C. Normal molting time after hatching is ~ 48 h at 26 °C. (.zip). Available at: https://datadryad.org/stash/share/xb2VW4o80AmId3mLFZB07Ho7rHxPx-htK9q5J_-2miM ; doi: https://doi.org/10.5061/dryad.xgxd254d1
DOI: 10.6084/m9.figshare.14433206.v1
title: Additional file 3 of Systemic paralogy and function of retinal determination network homologs in arachnids

description: Additional file 3: Video S1: Time-lapse imaging of a postembryo ~ 24 h after hatching of Parasteatoda tepidariorum from the dH2O-injected treatment (negative control). Pictures were taken every 30 min, in a room at 22 °C. Normal molting time after hatching is ~ 48 h at 26 °C. Video S2: Time-lapse imaging of a postembryo ~ 24 h after hatching of Parasteatoda tepidariorum from the Ptep-soA-injected treatment. Pictures were taken every 30 min, in a room at 22 °C. Normal molting time after hatching is ~ 48 h at 26 °C. (.zip). Available at: https://datadryad.org/stash/share/xb2VW4o80AmId3mLFZB07Ho7rHxPx-htK9q5J_-2miM ; doi: https://doi.org/10.5061/dryad.xgxd254d1
DOI: 10.6084/m9.figshare.14433203
title: Additional file of Systemic paralogy and function of retinal determination network homologs in arachnids

description: Additional file of Systemic paralogy and function of retinal determination network homologs in arachnids
DOI: 10.6084/m9.figshare.14433209
title: Additional file 4 of Systemic paralogy and function of retinal determination network homologs in arachnids

description: Additional file 4. Dataset S1: Dataset of the orthology analyses. Alignments and sequences of Charinus RDGN genes identified in this study and gene trees in Newick format; alignments of opsins and arrestins. (.zip). Available at: https://datadryad.org/stash/share/xb2VW4o80AmId3mLFZB07Ho7rHxPx-htK9q5J_-2miM ; doi: https://doi.org/10.5061/dryad.xgxd254d1
DOI: 10.6084/m9.figshare.14433209.v1
title: Additional file 4 of Systemic paralogy and function of retinal determination network homologs in arachnids

description: Additional file 4. Dataset S1: Dataset of the orthology analyses. Alignments and sequences of Charinus RDGN genes identified in this study and gene trees in Newick format; alignments of opsins and arrestins. (.zip). Available at: https://datadryad.org/stash/share/xb2VW4o80AmId3mLFZB07Ho7rHxPx-htK9q5J_-2miM ; doi: https://doi.org/10.5061/dryad.xgxd254d1
DOI: 10.6084/m9.figshare.14433215
title: Additional file 6 of Systemic paralogy and function of retinal determination network homologs in arachnids

description: Additional file 6. Dataset S3: Dataset for the GOseq enrichment analyses. This folder contains the complete GOseq results of enriched/depleted (FDR ≤ 0.05) GO terms of up- (Log2FC &gt; 1) and down-regulated (Log2FC
DOI: 10.6084/m9.figshare.14433203.v3
title: Additional file of Systemic paralogy and function of retinal determination network homologs in arachnids

description: Additional file of Systemic paralogy and function of retinal determination network homologs in arachnids
DOI: 10.6084/m9.figshare.14433212.v1
title: Additional file 5 of Systemic paralogy and function of retinal determination network homologs in arachnids

description: Additional file 5. Dataset S2: Dataset for the differential gene expression analyses. DESeq2 dataset (DESeq (dds); filtered for padj &gt; 0.5) of the DGE analysis of Comparison 1, 2.1 and 2.2 (see “Material and Methods” for explanation). run_ddseq2.r: custom R script used to run all three analysis. (.zip). Available at: https://datadryad.org/stash/share/xb2VW4o80AmId3mLFZB07Ho7rHxPx-htK9q5J_-2miM ; doi: https://doi.org/10.5061/dryad.xgxd254d1
DOI: 10.6084/m9.figshare.14433218
title: Additional file 7 of Systemic paralogy and function of retinal determination network homologs in arachnids

description: Additional file 7. Dataset S4. (a): High resolution Additional file 1 Fig. S14. (b): Spreadsheets with the raw counts and sum of counts used to generate the distribution bar plots of the Ptep-soA RNAi experiment. (c) raw counts and sum of counts used to generate the distribution bar plots of the effects of Ptep-soA RNAi per eye type. (d) Primer sequences for the amplified fragments of Ptep-soA, Ptep-otdB and Ptep-OptixB. (.zip). Available at: https://datadryad.org/stash/share/xb2VW4o80AmId3mLFZB07Ho7rHxPx-htK9q5J_-2miM ; doi: https://doi.org/10.5061/dryad.xgxd254d1
DOI: 10.6084/m9.figshare.14433218.v1
title: Additional file 7 of Systemic paralogy and function of retinal determination network homologs in arachnids

description: Additional file 7. Dataset S4. (a): High resolution Additional file 1 Fig. S14. (b): Spreadsheets with the raw counts and sum of counts used to generate the distribution bar plots of the Ptep-soA RNAi experiment. (c) raw counts and sum of counts used to generate the distribution bar plots of the effects of Ptep-soA RNAi per eye type. (d) Primer sequences for the amplified fragments of Ptep-soA, Ptep-otdB and Ptep-OptixB. (.zip). Available at: https://datadryad.org/stash/share/xb2VW4o80AmId3mLFZB07Ho7rHxPx-htK9q5J_-2miM ; doi: https://doi.org/10.5061/dryad.xgxd254d1