cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26036/cnp0003961
title: A cellular hierarchy in melanoma uncouples growth and metastatic phenotypes

description: Although melanoma is notorious for its high degree of heterogeneity and plasticity1,2, the origin and magnitude of cell-state diversity remains poorly understood. Equally, it is unclear whether growth and metastatic dissemination are supported by overlapping or distinct melanoma subpopulations. Here, by combining mouse genetics, single-cell and spatial transcriptomics, lineage tracing and quantitative modelling, we provide evidence of a hierarchical model of tumour growth that mirrors the cellular and molecular logic underlying the cell-fate specification and differentiation of the embryonic neural crest. We show that tumorigenic competence is associated with a spatially localized perivascular niche, a phenotype acquired through an intercellular communication pathway established by endothelial cells. Consistent with a model in which only a fraction of cells are fated to fuel growth, temporal single-cell tracing of a population of melanoma cells with a mesenchymal-like state revealed that these cells do not contribute to primary tumour growth but, instead, constitute a pool of metastatic initiating cells that switch cell identity while disseminating to secondary organs. Our data provide a spatially and temporally resolved map of the diversity and trajectories of melanoma cell states and suggest that the ability to support growth and metastasis are limited to distinct pools of cells. The observation that these phenotypic competencies can be dynamically acquired after exposure to specific niche signals warrant the development of therapeutic strategies that interfere with the cancer cell reprogramming activity of such microenvironmental cues.
DOI: 10.5281/zenodo.7739429
title: Data set and analysis for the preprint "Influences of local and global context on local orientation perception"

description: This is the raw data and preprocessed one, with GNU Octave scripts for plots and analyses, for the preprint : https://www.authorea.com/users/596319/articles/629862-influences-of-local-and-global-context-on-local-orientation-perception see the readme file in the zip file for further information.
DOI: 10.5281/zenodo.7739428
title: Data set and analysis for the preprint "Influences of local and global context on local orientation perception"

description: This is the raw data and preprocessed one, with GNU Octave scripts for plots and analyses, for the preprint : https://www.authorea.com/users/596319/articles/629862-influences-of-local-and-global-context-on-local-orientation-perception see the readme file in the zip file for further information.
DOI: 10.34740/kaggle/dsv/5175129
title: Pakistan Intellectual Capital
DOI: 10.6084/m9.figshare.21995072.v4
title: Files for Main Figure 3

description: Quantified TEs in TPM counts in simulated short-read measured by 7 approaches. File used for main figure 3. <br> Information about column names TE_name: Name of TE individuals TE_label: Positions of TE individuals length: TE lengths Long: Long-read TE output org_tel: Telescope TE output mod_tel: LocusMasterTE TE output squire: Squire TE output uniq: Unique counts from Telescope TE output best: Best counts from Telescope TE output rsem: RSEM TE output salmonTE: salmonTE TE output
DOI: 10.5281/zenodo.7739527
title: 756e9c19-ec2c-4b1a-b228-fc3ad1bce03e

description: These data sets are one of the workflows in manabuishii/yevis-getting-started.
DOI: 10.5281/zenodo.7739526
title: 756e9c19-ec2c-4b1a-b228-fc3ad1bce03e

description: These data sets are one of the workflows in manabuishii/yevis-getting-started.
DOI: 10.34740/kaggle/dsv/5175267
title: Pakistan Temperature
DOI: 10.6084/m9.figshare.22283677
title: Supplemental Table S1.docx

description: Ingredients and chemical composition of the antepartum and postpartum diets on a DM basis
DOI: 10.6084/m9.figshare.22283677.v1
title: Supplemental Table S1.docx

description: Ingredients and chemical composition of the antepartum and postpartum diets on a DM basis
DOI: 10.6084/m9.figshare.22180984
title: Questionnaire

description: Questionnaire on Knowledge, attitude and practices of medical undergraduates in India towards COVID-19
DOI: 10.6084/m9.figshare.22180984.v1
title: Questionnaire

description: Questionnaire on Knowledge, attitude and practices of medical undergraduates in India towards COVID-19
DOI: 10.6084/m9.figshare.22283695.v1
title: Supplementary Material for: Heartbeat-Evoked Potential in Major Depressive Disorder: A Biomarker for Differential Treatment Prediction between Venlafaxine and rTMS?

description: <b><i>Introduction:</i></b> Currently, major depressive disorder (MDD) treatment plans are based on trial-and-error, and remission rates remain low. A strategy to replace trial-and-error and increase remission rates could be treatment stratification. We explored the heartbeat-evoked potential (HEP) as a biomarker for treatment stratification to either antidepressant medication or rTMS treatment. <b><i>Methods:</i></b> Two datasets were analyzed: (1) the International Study to Predict Optimized Treatment in Depression (iSPOT-D; <i>n</i> = 1,008 MDD patients, randomized to escitalopram, sertraline, or venlafaxine, and <i>n</i> = 336 healthy controls) and (2) a multi-site, open-label rTMS study (<i>n</i> = 196). The primary outcome measure was remission. Cardiac field artifacts were removed from the baseline EEG using independent component analysis (ICA). The HEP-peak was detected in a bandwidth of 20 ms around 8 ms and 270 ms (N8, N270) after the R-peak of the electrocardiogram signal. Differences between remitters and non-remitters were statistically assessed by repeated-measures ANOVAs for electrodes Fp1, Cz, and Oz. <b><i>Results:</i></b> In the venlafaxine subgroup, remitters showed a lower HEP around the N8 peak than non-remitters on electrode site Cz (<i>p</i> = 0.004; <i>d</i> = 0.497). The rTMS group showed a non-significant difference in the opposite direction (<i>d</i> = −0.051). Retrospective stratification to one of the treatments based on the HEP resulted in enhanced treatment outcome prediction for venlafaxine (+22.98%) and rTMS (+10.66%). <b><i>Conclusion:</i></b> These data suggest that the HEP could be used as a stratification biomarker between venlafaxine and rTMS; however, future out-of-sample replication is warranted.
DOI: 10.34740/kaggle/dsv/5175316
title: Palestine Body Count
DOI: 10.6084/m9.figshare.22178423
title: Statistical analysis

description: Results of statistical analysis
DOI: 10.6084/m9.figshare.22178423.v2
title: Statistical analysis

description: Results of statistical analysis
DOI: 10.6084/m9.figshare.22178414
title: Data table

description: The excel dataset shows the data collected from 613 medical students from India about their knowledge, attitude and practice towards COVID-19
DOI: 10.6084/m9.figshare.22178414.v2
title: Data table

description: The excel dataset shows the data collected from 613 medical students from India about their knowledge, attitude and practice towards COVID-19
DOI: 10.25573/serc.21561189
title: RNA sequencing dataset from Pseudodesulfovibrio mercurii ND132 batch cultures

description: <strong>RNA-seq sample set from batch cultures (CB):</strong> Sequencing of RNA samples from batch culture bottle (CB) mercury methylation assays. Wild-type cultures of <em>Pseudodesulfovibrio mercurii </em>ND132 were grown with arsenic, methionine or adenosine to test for differential expression in transcriptome compared to control (no treatment). Three biological replicate samples (R1, R2, R3) for each treatments. This dataset includes the raw paired-end sequencing files in fastq format. For the adenosine treatment (Ad) the sample labeled 'BA' is the third biological replicate (equivalent to R3 for other treatments). Control (Ct), no treatment Treatments: Arsenite (AsIII) 0.02 mM Arsenate (AsV) 0.2 mM Methionine (Met) 1.0 mM Adenosine 2'3'-dialdehyde (Ad) 0.1 mM
DOI: 10.25573/serc.21561189.v1
title: RNA sequencing dataset from Pseudodesulfovibrio mercurii ND132 batch cultures

description: <strong>RNA-seq sample set from batch cultures (CB):</strong> Sequencing of RNA samples from batch culture bottle (CB) mercury methylation assays. Wild-type cultures of <em>Pseudodesulfovibrio mercurii </em>ND132 were grown with arsenic, methionine or adenosine to test for differential expression in transcriptome compared to control (no treatment). Three biological replicate samples (R1, R2, R3) for each treatments. This dataset includes the raw paired-end sequencing files in fastq format. For the adenosine treatment (Ad) the sample labeled 'BA' is the third biological replicate (equivalent to R3 for other treatments). Control (Ct), no treatment Treatments: Arsenite (AsIII) 0.02 mM Arsenate (AsV) 0.2 mM Methionine (Met) 1.0 mM Adenosine 2'3'-dialdehyde (Ad) 0.1 mM
DOI: 10.25573/serc.21561387
title: RNA sequencing dataset from Pseudodesulfovibrio mercurii ND132 washed-cell cultures

description: <strong>RNA-seq Sample Set WC-RNA-seq:</strong> Sequencing of RNA samples from washed-cell mercury methylation assays. Wild-type cultures of <em>Pseudodesulfovibrio mercurii</em> ND132 were grown with arsenic to test for differential expression in transcriptome compared to control (no arsenic treatment). Three biological replicate samples (R1, R2, R3) for each treatment. This dataset includes the raw paired-end sequencing files in fastq format. <br> Control (Ct), no arsenic Treatments, grown with: Arsenite (AsIII) 0.02 mM Arsenate (AsV) 0.2 mM
DOI: 10.25573/serc.21561387.v1
title: RNA sequencing dataset from Pseudodesulfovibrio mercurii ND132 washed-cell cultures

description: <strong>RNA-seq Sample Set WC-RNA-seq:</strong> Sequencing of RNA samples from washed-cell mercury methylation assays. Wild-type cultures of <em>Pseudodesulfovibrio mercurii</em> ND132 were grown with arsenic to test for differential expression in transcriptome compared to control (no arsenic treatment). Three biological replicate samples (R1, R2, R3) for each treatment. This dataset includes the raw paired-end sequencing files in fastq format. <br> Control (Ct), no arsenic Treatments, grown with: Arsenite (AsIII) 0.02 mM Arsenate (AsV) 0.2 mM
DOI: 10.34740/kaggle/dsv/5174680
title: Bangladesh Weather Data from 1995 - 2012
DOI: 10.6084/m9.figshare.22283707
title: Supplemental Table SI

description: Ingredients and chemical composition of the antepartum and postpartum diets on a DM basis
DOI: 10.6084/m9.figshare.20284713
title: Data availability for Mirusviricota and the GOEV database

description: Data availability includes supplemental tables, FASTA files corresponding to the GOEV genomic database, genes, proteins, predicted 3D protein structure, and phylogenetic trees with theiur associated metadata. This data availability also includes a folder for all to Mirusviricota MAGs.
DOI: 10.6084/m9.figshare.20284713.v10
title: Data availability for Mirusviricota and the GOEV database

description: Data availability includes supplemental tables, FASTA files corresponding to the GOEV genomic database, genes, proteins, predicted 3D protein structure, and phylogenetic trees with theiur associated metadata. This data availability also includes a folder for all to Mirusviricota MAGs.
DOI: 10.6084/m9.figshare.22283710
title: Supplemental Table S2 and S3

description: <strong>Supplemental Table 2.</strong> List of the differentially altered metabolites in HEAL vs. SCHK (<em>P </em>&lt; 0.05) <strong>Supplemental Table 3. </strong>List of differentially altered lipids in HEAL vs. SCHK (<em>P</em> &lt;0.05)
DOI: 10.34740/kaggle/dsv/5175357
title: Hadith Project
DOI: 10.34740/kaggle/dsv/5174219
title: World Population all countries different parameter
DOI: 10.34740/kaggle/dsv/5175412
title: Vikings - All Seasons Complete Script
DOI: 10.6084/m9.figshare.16557598.v1
title: Forecasting short-term mortality trends using Bernstein polynomials

description: Mortality data play an important role on the fields such as health, epidemiology and national planning. Most mortality models mainly focus on providing a perfect fitting, to the detriment of an exact forecasting result. In this paper, we fit the Bernstein polynomial to mortality data based on maximum likelihood based inference through the simulated annealing method. The proposed method utilizes the derivative of Bernstein polynomials to describe the pattern of mortality rates. The asymptotic behavior of the proposed model is also given on general results. The performance of the proposed method is evaluated by simulated examples and illustrated through applications to datasets provided from the Human Mortality Database (www.mortality.org). The simulated examples and real data analysis show that the proposed approach is quite satisfactory in forecasting the short-term mortality trends.
DOI: 10.34740/kaggle/dsv/5175484
title: Family of Five - Genome Dataset
DOI: 10.6084/m9.figshare.21407319.v3
title: A Prolonged Wait: The Impact of COVID-19 on Elective surgeries in India

description: This is the database of sudy conducted to analyse the impact of COVID 19 on elective surgeries.
DOI: 10.34740/kaggle/dsv/5175517
title: Pakistan's Top 250 YouTubers
DOI: 10.48505/nims.3848
title: Continuous real-time O 1s core XPS spectra of H2O adsorption on +c Ga-face and m-plane surfaces of GaN

description: The surface oxidation behavior of different GaN surfaces (the polar Ga-face (+c) and the nonpolar m-plane) under H2O vapor ambient was studied by continuous real-time monitoring of the O 1s core X-ray photoelectron spectra generated under synchrotron radiation. XPS measurements were performed at BL23SU, SPring-8. The O 1s core spectra were continuously obtained with about 30 s per scan at a binding energy of 538 to 525 eV. The first column of each scan is the binding energy, and the second column is the count rate. The data are in CSV and VAMAS formats. See the linked paper for experimental details.
DOI: 10.48505/nims.3847
title: Continuous real-time O 1s core XPS spectra of initial O<sub>2</sub> molecule adsorption on polar and m-plane surfaces of GaN

description: The initial adsorption behavior of different GaN surfaces (the polar Ga-face (+c) and N-face (−c) and the nonpolar (101̅0) (m)-plane) under O<sub>2</sub> molecule beam irradiation was studied by continuous real-time monitoring of the O 1s core X-ray photoelectron spectra generated under synchrotron radiation. XPS measurements were performed at BL23SU, SPring-8. Analyzing the chemical shift allows for determining which site the oxygen atom bonds to depending on the polarity and plane of GaN, which contributes to detailed understanding of the surface oxidation process. The first column of each scan is the kinetic energy, and the second column is the count rate. Before starting XPS analysis, the sample was annealed at 900 °C for 20 minutes. A scan was obtained every 30 seconds while irradiating the surface with O<sub>2</sub> molecule beam. The data are in CSV and VAMAS formats.
DOI: 10.5517/ccdc.csd.cc2fh6x2
title: CCDC 2248954: Experimental Crystal Structure Determination

description: Related Article: Evgeny G. Rys, Peter Lönnecke, Evamarie Hey-Hawkins|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/5175552
title: Pakistan's Job Market
DOI: 10.34683/sr751
title: StoneRounds Case: SR751
title: AR Retinitis Pigmentosa

description: StoneRounds Case SR751 was diagnosed with AR Retinitis Pigmentosa likely caused by mutations in the gene: FAM161A.
DOI: 10.34683/sr2345
title: StoneRounds Case: SR2345
title: Pattern Dystrophy

description: StoneRounds Case SR2345 was diagnosed with Pattern Dystrophy likely caused by mutations in the gene: PRPH2.
DOI: 10.6084/m9.figshare.22283761
title: Sustainable and eco-friendly seaweed influence on plant growth and Physiological Activity of pigeon pea

description: Seaweeds, namely, <em>Sargassum myriocystum, Caulerpa racemosa </em>and <em>Gracilaria edulis, </em>were used for seed treatment (dry and wet) and foliar application in the case of pigeon pea. Among the treatments, seeds infused (wet seeds treatment) with S<em>argassum myriocystum </em>(1%) for 3 h along with a foliar spray of seaweed extracts (5%) recorded higher field emergence, growth, relative growth rate, leaf area index and duration, total chlorophyll pigment, crop growth rate and net assimilation rate
DOI: 10.6084/m9.figshare.22283761.v1
title: Sustainable and eco-friendly seaweed influence on plant growth and Physiological Activity of pigeon pea

description: Seaweeds, namely, <em>Sargassum myriocystum, Caulerpa racemosa </em>and <em>Gracilaria edulis, </em>were used for seed treatment (dry and wet) and foliar application in the case of pigeon pea. Among the treatments, seeds infused (wet seeds treatment) with S<em>argassum myriocystum </em>(1%) for 3 h along with a foliar spray of seaweed extracts (5%) recorded higher field emergence, growth, relative growth rate, leaf area index and duration, total chlorophyll pigment, crop growth rate and net assimilation rate
DOI: 10.34740/kaggle/dsv/5175587
title: Pakistan's National Assembly Attendance 2018-2022
DOI: 10.6084/m9.figshare.22283788
title: Sustainable and eco-friendly seaweed influence on plant growth and Physiological Activity of pigeon pea

description: Seaweeds, namely, <em>Sargassum myriocystum, Caulerpa racemosa</em> and <em>Gracilaria edulis,</em> were used for seed treatment (dry and wet) and foliar application in the case of pigeon pea. Among the treatments, seeds infused (wet seeds treatment) with S<em>argassum myriocystum</em> (1%) for 3 h along with a foliar spray of seaweed extracts (5%) recorded higher field emergence, growth, relative growth rate, leaf area index and duration, total chlorophyll pigment, crop growth rate and net assimilation rate
DOI: 10.34740/kaggle/dsv/5175615
title: Pakistan News Headlines
DOI: 10.6084/m9.figshare.22283797
title: 20210830_154904_006_2279-proband.cyhd.zip

description: data
DOI: 10.6084/m9.figshare.22283797.v1
title: 20210830_154904_006_2279-proband.cyhd.zip

description: data
DOI: 10.34740/kaggle/dsv/5175643
title: Elon Musk Tweets
DOI: 10.34740/kaggle/dsv/5175665
title: Trump's Legacy
DOI: 10.6084/m9.figshare.22275910.v2
title: Appendix "A Dirty Little Secret Conducting a Systematic Literature Review Regarding Overstocks"

description: Appendix of the paper "A Dirty Little Secret Conducting a Systematic Literature Review Regarding Overstocks"
DOI: 10.34740/kaggle/dsv/5175723
title: Pakistan's Top 25 Instagram Accounts
DOI: 10.6084/m9.figshare.22283821
title: Contextual fear expression engages a complex set of interactions between ventromedial prefrontal cortex cholinergic, glutamatergic, nitrergic and cannabinergic signaling

description: Rats re-exposed to an environment previously associated with the onset of shocks evoke a set of conditioned defensive responses in preparation to an eventual flight or fight reaction. Ventromedial prefrontal cortex (vmPFC) is mutually important for controlling the behavioral/physiological consequences of stress exposure and the one’s ability to satisfactorily undergo spatial navigation. While cholinergic, cannabinergic and glutamatergic/nitrergic neurotransmissions within the vmPFC are shown as important for modulating both behavioral and autonomic defensive responses, there is a gap on how these systems would interact to ultimately coordinate such conditioned reactions. Then, males Wistar rats had guide cannulas bilaterally implanted to allow drugs to be administered in vmPFC 10 min before their re-exposure to the conditioning chamber where three shocks were delivered at the intensity of 0.85 mA for 2 s two days ago. A femoral catheter was implanted for cardiovascular recordings the day before fear retrieval test. It was found that the increment of freezing behavior and autonomic responses induced by vmPFC infusion of neostigmine (acetylcholinesterase inhibitor) were prevented by prior infusion of a transient receptor potential vanilloid type 1 (TRPV1) antagonist, N-methyl-D-aspartate receptor antagonist, neuronal nitric oxide synthase inhibitor, nitric oxide scavenger and soluble guanylate cyclase inhibitor. A type 3 muscarinic receptor antagonist was unable to prevent the boosting in conditioned responses triggered by a TRPV1 agonist and a cannabinoid receptors type 1 antagonist. Altogether, our results suggest that expression of contextual conditioned responses involves a complex set of signaling steps comprising different but complementary neurotransmitter pathways.
DOI: 10.6084/m9.figshare.22283821.v1
title: Contextual fear expression engages a complex set of interactions between ventromedial prefrontal cortex cholinergic, glutamatergic, nitrergic and cannabinergic signaling

description: Rats re-exposed to an environment previously associated with the onset of shocks evoke a set of conditioned defensive responses in preparation to an eventual flight or fight reaction. Ventromedial prefrontal cortex (vmPFC) is mutually important for controlling the behavioral/physiological consequences of stress exposure and the one’s ability to satisfactorily undergo spatial navigation. While cholinergic, cannabinergic and glutamatergic/nitrergic neurotransmissions within the vmPFC are shown as important for modulating both behavioral and autonomic defensive responses, there is a gap on how these systems would interact to ultimately coordinate such conditioned reactions. Then, males Wistar rats had guide cannulas bilaterally implanted to allow drugs to be administered in vmPFC 10 min before their re-exposure to the conditioning chamber where three shocks were delivered at the intensity of 0.85 mA for 2 s two days ago. A femoral catheter was implanted for cardiovascular recordings the day before fear retrieval test. It was found that the increment of freezing behavior and autonomic responses induced by vmPFC infusion of neostigmine (acetylcholinesterase inhibitor) were prevented by prior infusion of a transient receptor potential vanilloid type 1 (TRPV1) antagonist, N-methyl-D-aspartate receptor antagonist, neuronal nitric oxide synthase inhibitor, nitric oxide scavenger and soluble guanylate cyclase inhibitor. A type 3 muscarinic receptor antagonist was unable to prevent the boosting in conditioned responses triggered by a TRPV1 agonist and a cannabinoid receptors type 1 antagonist. Altogether, our results suggest that expression of contextual conditioned responses involves a complex set of signaling steps comprising different but complementary neurotransmitter pathways.
DOI: 10.6084/m9.figshare.22266940.v1
title: Supplementary Table 2 Detailed information of coadaptation variants

description: Supplementary Table 2: Detailed information of coadaptation variants
DOI: 10.6084/m9.figshare.22266940.v2
title: Supplementary Table 4. Detailed information of coadaptation variants

description: Supplementary Table 2: Detailed information of coadaptation variants
DOI: 10.6084/m9.figshare.22266940.v3
title: Supplementary Table 4. Detailed information of coadaptation variants

description: Supplementary Table 2: Detailed information of coadaptation variants
DOI: 10.5519/qd.l52rkdf4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (329 records)
DOI: 10.6084/m9.figshare.22283863
title: complete experimental data

description: .pzf files
DOI: 10.6084/m9.figshare.22283866
title: Supplementary Table S2. Genetic variants significantly related to the clinical phenotypes of V. vulnificus based on Pyseer and DBGWAS.

description: Supplementary Table S2. Genetic variants significantly related to the clinical phenotypes of V. vulnificus based on Pyseer and DBGWAS.