cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5814624
title: Data of "Decreasing the level of hemicelluloses in sow's lactation diet affects the milk composition and post-weaning performances of low birthweight piglets"

description: This study showed the effects of decreasing the levels of hemicelluloses in sow’s lactation diet on milk composition and on sow and piglet performances. Sow_performances.csv: A comma separated value file of data used to investigate the relationship between the performances of Swiss Large White sows and decreasing levels of hemicelluloses in lactation diet. Milk_composition.csv: A comma separated value file of data used to investigate the relationship between the milk composition of Swiss Large White sows and decreasing levels of hemicelluloses in lactation diet. Piglets_performances.csv: A comma separated value file of data used to investigate the relationship between the performances of Swiss Large White pigs and decreasing levels of hemicelluloses in lactation maternal diet. Feed_intake_piglets.csv: A comma separated value file of data used to investigate the relationship between the feed intake of Swiss Large White pigs and decreasing levels of hemicelluloses in lactation maternal diet. Diarrhea_postweaning.csv: A comma separated value file of data used to investigate the relationship between the post-weaning diarrhoea of Swiss Large White pigs and decreasing levels of hemicelluloses in lactation maternal diet. data_description.xlsx: meta data for Sow_performances.csv, Milk_composition.csv, Piglets_performances.csv, Feed_intake_piglets.csv and Diarrhea_postweaning.csv with description of variables.
DOI: 10.5281/zenodo.5814623
title: Data of "Decreasing the level of hemicelluloses in sow's lactation diet affects the milk composition and post-weaning performances of low birthweight piglets"

description: This study showed the effects of decreasing the levels of hemicelluloses in sow’s lactation diet on milk composition and on sow and piglet performances. Sow_performances.csv: A comma separated value file of data used to investigate the relationship between the performances of Swiss Large White sows and decreasing levels of hemicelluloses in lactation diet. Milk_composition.csv: A comma separated value file of data used to investigate the relationship between the milk composition of Swiss Large White sows and decreasing levels of hemicelluloses in lactation diet. Piglets_performances.csv: A comma separated value file of data used to investigate the relationship between the performances of Swiss Large White pigs and decreasing levels of hemicelluloses in lactation maternal diet. Feed_intake_piglets.csv: A comma separated value file of data used to investigate the relationship between the feed intake of Swiss Large White pigs and decreasing levels of hemicelluloses in lactation maternal diet. Diarrhea_postweaning.csv: A comma separated value file of data used to investigate the relationship between the post-weaning diarrhoea of Swiss Large White pigs and decreasing levels of hemicelluloses in lactation maternal diet. data_description.xlsx: meta data for Sow_performances.csv, Milk_composition.csv, Piglets_performances.csv, Feed_intake_piglets.csv and Diarrhea_postweaning.csv with description of variables.
DOI: 10.34740/kaggle/dsv/2999208
title: Omicron daily cases by country (COVID-19 variant)
DOI: 10.6084/m9.figshare.17714912
title: Supplementary Material for: Defining the Validity of Skin Self-Examination as a Screening Test for the Detection of Suspicious Pigmented Lesions: A Meta-Analysis of Diagnostic Test Accuracy

description: <b><i>Background:</i></b> Skin self-examination (SSE) is widely promoted for the detection of suspicious pigmented lesions. However, determining screening accuracy is essential to appraising the usefulness of SSE. <b><i>Objectives:</i></b> The aim of this work was to pool estimates from studies of SSE diagnostic accuracy in the detection of suspicious pigmented lesions. <b><i>Methods:</i></b> This study was registered with PROSPERO (CRD42021246356) and conducted in accordance with PRISMA-DTA guidelines. A systematic search of Medline (PubMed) EMBASE, CINAHL, and The Cochrane Library was conducted to identify relevant studies. We included studies that examined the accuracy of SSE, either whole-body or site-specific, for detecting change in individual pigmented lesions or detecting an atypical naevus. A univariate random-effects model, based on logit-transformed data, was used to calculate a summary diagnostic odds ratio (DOR) as well as pooled sensitivity and specificity. Cochran’s <i>Q</i> test and the <i>I</i><sup>2</sup> statistic were calculated to assess heterogeneity. A proportional hazards model was used to calculate the area under the curve (AUC) and plot the summary receiver operator characteristic curve. We used the Quality Assessment of Diagnostic Accuracy Studies-2 tool to grade study quality. <b><i>Results:</i></b> We identified 757 studies, of which 3 met inclusion criteria for quantitative synthesis. The pooled sensitivity and specificity based on 553 included participants was 59 and 82%, respectively. The summary DOR was 5.88 and the AUC was 0.71. There were some concerns regarding risk of bias in all 3 studies. <b><i>Conclusions:</i></b> SSE can detect suspicious pigmented lesions with reasonable sensitivity and relatively high specificity, with the AUC suggesting acceptable discriminatory ability.
DOI: 10.6084/m9.figshare.17714912.v1
title: Supplementary Material for: Defining the Validity of Skin Self-Examination as a Screening Test for the Detection of Suspicious Pigmented Lesions: A Meta-Analysis of Diagnostic Test Accuracy

description: <b><i>Background:</i></b> Skin self-examination (SSE) is widely promoted for the detection of suspicious pigmented lesions. However, determining screening accuracy is essential to appraising the usefulness of SSE. <b><i>Objectives:</i></b> The aim of this work was to pool estimates from studies of SSE diagnostic accuracy in the detection of suspicious pigmented lesions. <b><i>Methods:</i></b> This study was registered with PROSPERO (CRD42021246356) and conducted in accordance with PRISMA-DTA guidelines. A systematic search of Medline (PubMed) EMBASE, CINAHL, and The Cochrane Library was conducted to identify relevant studies. We included studies that examined the accuracy of SSE, either whole-body or site-specific, for detecting change in individual pigmented lesions or detecting an atypical naevus. A univariate random-effects model, based on logit-transformed data, was used to calculate a summary diagnostic odds ratio (DOR) as well as pooled sensitivity and specificity. Cochran’s <i>Q</i> test and the <i>I</i><sup>2</sup> statistic were calculated to assess heterogeneity. A proportional hazards model was used to calculate the area under the curve (AUC) and plot the summary receiver operator characteristic curve. We used the Quality Assessment of Diagnostic Accuracy Studies-2 tool to grade study quality. <b><i>Results:</i></b> We identified 757 studies, of which 3 met inclusion criteria for quantitative synthesis. The pooled sensitivity and specificity based on 553 included participants was 59 and 82%, respectively. The summary DOR was 5.88 and the AUC was 0.71. There were some concerns regarding risk of bias in all 3 studies. <b><i>Conclusions:</i></b> SSE can detect suspicious pigmented lesions with reasonable sensitivity and relatively high specificity, with the AUC suggesting acceptable discriminatory ability.
DOI: 10.5281/zenodo.5798104
title: Association of rs3027178 polymorphism in the circadian clock gene PER1 with susceptibility to Alzheimer's disease and longevity in an Italian population

description: Many physiological processes in the human body follow a 24-h circadian rhythm controlled by the circadian clock system. Light, sensed by retina, is the predominant "zeitgeber" able to synchronize the circadian rhythms to the light-dark cycles. Circadian rhythm dysfunction and sleep disorders have been associated with aging and neurodegenerative diseases including mild cognitive impairment (MCI) and Alzheimer's disease (AD). In the present study, we aimed at investigating the genetic variability of clock genes in AD patients compared to healthy controls from Italy. We also included a group of Italian centenarians, considered as super-controls in association studies given their extreme phenotype of successful aging. We analyzed the exon sequences of eighty-four genes related to circadian rhythms, and the most significant variants identified in this first discovery phase were further assessed in a larger independent cohort of AD patients by matrix assisted laser desorption/ionization-time of flight mass spectrometry. The results identified a significant association between the rs3027178 polymorphism in the PER1 circadian gene with AD, the G allele being protective for AD. Interestingly, rs3027178 showed similar genotypic frequencies among AD patients and centenarians. These results collectively underline the relevance of circadian dysfunction in the predisposition to AD and contribute to the discussion on the role of the relationship between the genetics of age-related diseases and of longevity.
description: This work has been supported by the Italian Ministry of Health Ricerca Finalizzata Young Researchers (under 40)-Giovani Ricercatori (GR-2013-02358026) to A.S. and C.L.M. and Ricerca Corrente.
description: {"references": ["Association of rs3027178 polymorphism in the circadian clock gene PER1 with susceptibility to Alzheimer's disease and longevity in an Italian population"]}
DOI: 10.5281/zenodo.5798103
title: Association of rs3027178 polymorphism in the circadian clock gene PER1 with susceptibility to Alzheimer's disease and longevity in an Italian population

description: Many physiological processes in the human body follow a 24-h circadian rhythm controlled by the circadian clock system. Light, sensed by retina, is the predominant "zeitgeber" able to synchronize the circadian rhythms to the light-dark cycles. Circadian rhythm dysfunction and sleep disorders have been associated with aging and neurodegenerative diseases including mild cognitive impairment (MCI) and Alzheimer's disease (AD). In the present study, we aimed at investigating the genetic variability of clock genes in AD patients compared to healthy controls from Italy. We also included a group of Italian centenarians, considered as super-controls in association studies given their extreme phenotype of successful aging. We analyzed the exon sequences of eighty-four genes related to circadian rhythms, and the most significant variants identified in this first discovery phase were further assessed in a larger independent cohort of AD patients by matrix assisted laser desorption/ionization-time of flight mass spectrometry. The results identified a significant association between the rs3027178 polymorphism in the PER1 circadian gene with AD, the G allele being protective for AD. Interestingly, rs3027178 showed similar genotypic frequencies among AD patients and centenarians. These results collectively underline the relevance of circadian dysfunction in the predisposition to AD and contribute to the discussion on the role of the relationship between the genetics of age-related diseases and of longevity.
description: This work has been supported by the Italian Ministry of Health Ricerca Finalizzata Young Researchers (under 40)-Giovani Ricercatori (GR-2013-02358026) to A.S. and C.L.M. and Ricerca Corrente.
description: {"references": ["Association of rs3027178 polymorphism in the circadian clock gene PER1 with susceptibility to Alzheimer's disease and longevity in an Italian population"]}
DOI: 10.5281/zenodo.5796262
title: The antique genetic plight of the Mediterranean monk seal (Monachus monachus)

description: This repository contains all the scripts and most of the intermediary files necessary to replicate the analyses of the preprint "The antique genetic plight of the Mediterranean monk seal (<em>Monachus monachus</em>)" available at: https://biorxiv.org/cgi/content/short/2021.12.23.473149v1 Within each of the different zipped folders a readme.txt file briefly explains how the analyses are organized. We thank all the collectors and museums listed in Table S1 for providing access to genetic samples. We are grateful to Sophie Courjal and the staff of the “Plateau technique - Biologie moléculaire et microbiologie” at EDB for their assistance during lab work. This work was funded by the Fondation Prince Albert II de Monaco (project “Génétique de la conservation du phoque moine de Méditerranée”). The Genotoul bioinformatics (Bioinfo Genotoul) platforms provided computing resources, and the LABEX TULIP (ANR-10-LABX-0041) contributed to JS’ salary.
description: Abstract Disentangling the impact of Late Quaternary climate change from human activities can have crucial implications on the conservation of endangered species. We investigated the population genetics and demography of the Mediterranean monk seal (Monachus monachus), one of the world's most endangered marine mammals, through an unprecedented dataset encompassing historical (extinct) and extant populations from the eastern North Atlantic to the entire Mediterranean Basin. We show that Western-Sahara/Mauritania (Cabo Blanco), Madeira, Western Mediterranean (historical range) and Eastern Mediterranean regions segregate in four populations. This structure is likely the consequence of recent drift, combined with long-term isolation by distance (R2 = 0.7), resulting from prevailing short-distance (&lt; 500 km) and infrequent long-distance dispersal (&lt; 1,500 km). All populations (Madeira especially), show high levels of inbreeding and low levels of genetic diversity, seemingly declining since historical time, but surprisingly not being impacted by the 1997 massive die-off in Cabo Blanco. Approximate Bayesian Computation analyses support scenarios combining local extinctions and a major effective population size decline in all populations during Antiquity. Our results suggest that the early densification of human populations around the Mediterranean Basin coupled to the development of seafaring techniques were the main drivers of the decline of Mediterranean monk seals.
DOI: 10.5281/zenodo.5155127
title: DypFISH Datasets

description: Datasets corresponding to the results presented in the manuscript "DypFISH: Dynamic Patterned FISH to Interrogate RNA and Protein Spatial and Temporal Subcellular Distribution" by A. Savulescu et al. are available on the accompanying website www.dypfish.org.
DOI: 10.5281/zenodo.5155126
title: DypFISH Datasets

description: Datasets corresponding to the results presented in the manuscript "DypFISH: Dynamic Patterned FISH to Interrogate RNA and Protein Spatial and Temporal Subcellular Distribution" by A. Savulescu et al. are available on the accompanying website www.dypfish.org.
DOI: 10.5281/zenodo.5814628
title: Dataset for Overriding lithospheric strength affects continental collisional mode selection and subduction transference: Implications for Greater

description: This .zip file is the relative dataset for the models of <strong>Overriding lithospheric strength affects continental collisional mode selection and subduction transference: Implications for Greater India-Asia convergent system.</strong>
DOI: 10.5281/zenodo.5773601
title: data for "Probing molecular crowding in compressed tissues with Brillouin light scattering"

description: Data for the paper entitled "Probing molecular crowding in compressed tissues with Brillouin light scattering" published in PNAS
DOI: 10.5281/zenodo.5773600
title: data for "Probing molecular crowding in compressed tissues with Brillouin light scattering"

description: Data for the paper entitled "Probing molecular crowding in compressed tissues with Brillouin light scattering" published in PNAS
DOI: 10.5281/zenodo.5814759
title: Comparison of stopping powers and CSDA range values between libdEdx and dedx web

description: This data is a collection of energy and corresponding stopping power and CSDA range values. It was collected from the libdEdx library and dedx website<br> Data is a part of the thesis titled:<br> “Webassembly technology used in web interfaces presenting scientific calculations results” <br> AGH UST Poland Data Programs: ASTAR, PSTAR, MSTAR, BETHE_EXT, ICRU Ions: Hydrogen, Helium, Carbon, Oxygen, Iron, Uranium Materials: Water, Silicon, Copper, Gold, Lithiumfluoride, PMMA (polymethyl methacrylate)
DOI: 10.6084/m9.figshare.16572413.v3
title: Supplementary Tables

description: Table 1 shows the number of animals used in each study group and number of recording sites in each frequency region.<br> Table 2 shows the parameter estimates of the linear mixed effects model for MUA and LFP for acute and chronic trauma.
DOI: 10.6084/m9.figshare.16572413
title: Supplementary Tables

description: Table 1 shows the number of animals used in each study group and number of recording sites in each frequency region.<br> Table 2 shows the parameter estimates of the linear mixed effects model for MUA and LFP for acute and chronic trauma.
DOI: 10.6084/m9.figshare.17717699
title: Supplementary Material for: Hematohidrosis, Hemolacria, and “Trichorrhage”: A Systematic Review

description: <b><i>Introduction:</i></b> Hematohidrosis and hemolacria are 2 conditions surrounded in religiousness, mysticism, and supernatural superstitions. While the mechanism is still unclear, these cases have amazed physicians for centuries. <b><i>Methods:</i></b> We performed a systematic review in PubMed from 2000 to mid-2021 accounting for 75 studies from which we included 60 cases in 53 articles which were described. <b><i>Results:</i></b> The median age of apparition was 24 years with the youngest case being 12 and the oldest 81. Some of the diseases were secondary to other causes such as hemangiomas and other neoplasias or epistaxis episodes. Most of the cases have been reported in India and the USA; most of them correspond to hemolacria alone (51.6%). <b><i>Discussion:</i></b> We have stated the basics of the substances involved in the coagulation process that have been described as genetically altered in some patients such as mucins, metalloproteinases, and fibrinogen, as well as propose a mechanism that can explain the signs of this particular entity and approach to its treatment as well as provide the first trichoscopy image of a patient with hemolacria.
DOI: 10.5281/zenodo.5814808
title: Net community production, nutrients, and hydrographic parameters in the South China Sea in summer 2017

description: In summer, the Vietnam Offshore Current (VOC) and the Kuroshio intrusion are two important processes provoking considerable environmental fluctuations in the South China Sea (SCS). Net community production (NCP) is an important proxy of biological pump strength and can be estimated based on the dissolved oxygen to argon ratio (O<sub>2</sub>/Ar) in the mixed layer. To determine the influence of the VOC and Kuroshio intrusion on the NCP in the oligotrophic SCS, we conducted high-resolution underway measurements of O<sub>2</sub>/Ar and hydrographic parameters using membrane inlet mass spectrometry (MIMS, HPR-40, Hiden, UK) and multi-parameter water quality logger (RBR Maestro, Canada) during the cruise in the northeastern SCS in summer 2017. NCP in the mixed layer was estimated using the supersaturation of O<sub>2</sub>/Ar (Delta O<sub>2</sub>/Ar) and gas transfer velocity (k). All the underway observation data were compiled into the 5-min interval. To monitor the nutritive fluctuations induced by the VOC and Kuroshio intrusion, we also collected surface water samples from Niskin bottles at sampling stations for the nutrients analysis; the nutrients were then determined by an auto-analyzer. We divided the cruise into three phases (Phase 1, 2, and 3); Phase 1 was dominated by the Kuroshio intrusion, while Phase 3 was influenced by the VOC. Because the upwelling driven by cyclonic eddies and typhoons could introduce considerable uncertainties to the NCP result, we excluded the data obtained in the upwelling regions.
DOI: 10.15161/oar.it/74382
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.16944178
title: Supplementary Table 1

description: Supplementary Table 1: The table shows the number of animals used in each study group and the number of recording sites in each frequency region
DOI: 10.6084/m9.figshare.16944178.v2
title: Supplementary Table 1

description: Supplementary Table 1: The table shows the number of animals used in each study group and the number of recording sites in each frequency region
DOI: 10.6084/m9.figshare.16944178.v1
title: Supplementary Table 1

description: Supplementary Table 1: The table shows the number of animals used in each study group and the number of recording sites in each frequency region
DOI: 10.5281/zenodo.4537209
title: Hand Washing Video Dataset Annotated According to the World Health Organization's Handwashing Guidelines

description: <strong>Overview:</strong> This is a large-scale real-world dataset with videos recording medical staff washing their hands as part of their normal job duties in the Pauls Stradins Clinical University Hospital. There are 3185 hand washing episodes in total, each of which is annotated by up to seven different persons. The annotations classify the washing movements according to the World Health Organization's (WHO) guidelines by marking each frame in each video with a certain movement code. This dataset is part on three dataset series all following the same format: https://zenodo.org/record/4537209 - data collected in Pauls Stradins Clinical University Hospital https://zenodo.org/record/5808764 - data collected in Jurmala Hospital https://zenodo.org/record/5808789 - data collected in the Medical Education Technology Center (METC) of Riga Stradins University <strong>Applications: </strong>The intention of this dataset is twofold: to serve as a basis for training machine learning classifiers for automated hand washing movement recognition and quality control, and to allow to investigate the real-world quality of washing performed by working medical staff. <strong>Statistics:</strong> Frame rate: 30 FPS Resolution: 320x240 and 640x480 Number of videos: 3185 Number of annotation files: 6690 Movement codes (both in CSV and JSON files): 1: Hand washing movement — Palm to palm 2: Hand washing movement — Palm over dorsum, fingers interlaced 3: Hand washing movement — Palm to palm, fingers interlaced 4: Hand washing movement — Backs of fingers to opposing palm, fingers interlocked 5: Hand washing movement — Rotational rubbing of the thumb 6: Hand washing movement — Fingertips to palm 7: Turning off the faucet with a paper towel 0: Other hand washing movement Additional annotations (in JSON files only): Armband or watch present Ring present Long nails present <strong>Acknowledgments: </strong>The dataset collection was funded by the Ministry of Education and Science, Republic of Latvia, project “Integration of reliable technologies for protection against Covid-19 in healthcare and high-risk areas”, project No. VPP-COVID-2020/1-0004. <strong>References: </strong>For more detailed information, see this article: <em>M. Lulla, A. Rutkovskis, A. Slavinska, A. Vilde, A. Gromova, M. Ivanovs, A. Skadins, R. Kadikis and A. Elsts. Hand Washing Video Dataset Annotated According to the World Health Organization’s Handwashing Guidelines. Submitted to MDPI Data, 2021.</em> <strong>Contact information: </strong>atis.elsts@edi.lv