cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11858946
title: Additional file 8 of Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered

description: Additional file 8: A summary csv table of total crossover number for each BC1 sample with F1 parent, batch number, dysgenic or non-dysgenic, fecundity, and number of BC1 progeny per F1 parent.
DOI: 10.6084/m9.figshare.11858949.v1
title: Additional file 9 of Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered

description: Additional file 9: A summary csv table of genotype along each chromosome for all BC1 progeny. This csv file can be imported into R/qtl for genetic map construction, crossover interference quantification, and segregation distortion analysis.
DOI: 10.6084/m9.figshare.11858940
title: Additional file 7 of Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered

description: Additional file 7: A summary csv table of crossover positions for each BC1 sample with F1 parent, batch number, dysgenic or non-dysgenic, and fecundity. A crossover position ‘0’ means no crossover was observed for a chromosome. Reference position coordinates are based on the s9_2.fasta and s160_2.fasta genome assemblies available on FigShare at https://doi.org/10.6084/m9.figshare.11803881.v1.
DOI: 10.6084/m9.figshare.11858946.v1
title: Additional file 8 of Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered

description: Additional file 8: A summary csv table of total crossover number for each BC1 sample with F1 parent, batch number, dysgenic or non-dysgenic, fecundity, and number of BC1 progeny per F1 parent.
DOI: 10.6084/m9.figshare.11858940.v1
title: Additional file 7 of Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered

description: Additional file 7: A summary csv table of crossover positions for each BC1 sample with F1 parent, batch number, dysgenic or non-dysgenic, and fecundity. A crossover position ‘0’ means no crossover was observed for a chromosome. Reference position coordinates are based on the s9_2.fasta and s160_2.fasta genome assemblies available on FigShare at https://doi.org/10.6084/m9.figshare.11803881.v1.
DOI: 10.6084/m9.figshare.11858919
title: Additional file 4 of Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered

description: Additional file 4: Example control file used for multiplex shotgun genotyping protocol from Andolfatto et al. 2011.
DOI: 10.6084/m9.figshare.11858919.v1
title: Additional file 4 of Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered

description: Additional file 4: Example control file used for multiplex shotgun genotyping protocol from Andolfatto et al. 2011.
DOI: 10.6084/m9.figshare.11858910
title: Additional file 3 of Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered

description: Additional file 3: Sequencing outputs for demultiplexed BC1 progeny.
DOI: 10.6084/m9.figshare.11858910.v1
title: Additional file 3 of Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered

description: Additional file 3: Sequencing outputs for demultiplexed BC1 progeny.
DOI: 10.6084/m9.figshare.11858901
title: Additional file 2 of Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered

description: Additional file 2: A summary csv table of all intact copies of Polyphemus, Paris, Helena, and Penelope in the strain 160 PacBio assembly. Intact copies are defined as less than 5% diverged from the transposable element consensus sequence and having greater than 80% of the length of the consensus sequence.
DOI: 10.6084/m9.figshare.11858901.v1
title: Additional file 2 of Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered

description: Additional file 2: A summary csv table of all intact copies of Polyphemus, Paris, Helena, and Penelope in the strain 160 PacBio assembly. Intact copies are defined as less than 5% diverged from the transposable element consensus sequence and having greater than 80% of the length of the consensus sequence.
DOI: 10.6084/m9.figshare.11858817
title: Additional file 2 of Capacity and patient flow planning in post-term pregnancy outpatient clinics: a computer simulation modelling study

description: Additional file 2. Summary model results; Provides mean results and errors for each KPI, by experiment.
DOI: 10.6084/m9.figshare.11858817.v1
title: Additional file 2 of Capacity and patient flow planning in post-term pregnancy outpatient clinics: a computer simulation modelling study

description: Additional file 2. Summary model results; Provides mean results and errors for each KPI, by experiment.
DOI: 10.6084/m9.figshare.11858718
title: Additional file 3 of Epigenetic loss of heterozygosity of Apc and an inflammation-associated mutational signature detected in Lrig1+/âˆ’-driven murine colonic adenomas

description: Additional file 3. Raw RNA-Seq results for in Lrig1-Cre/+;Apcfl/+ colonic adenomas vs. wildtype colon.
DOI: 10.6084/m9.figshare.11858715
title: Additional file 2 of Epigenetic loss of heterozygosity of Apc and an inflammation-associated mutational signature detected in Lrig1+/âˆ’-driven murine colonic adenomas

description: Additional file 2. Annotated RNA-Seq results for in Lrig1-Cre/+;Apcfl/+ colonic adenomas vs. wildtype colon.
DOI: 10.6084/m9.figshare.11858718.v1
title: Additional file 3 of Epigenetic loss of heterozygosity of Apc and an inflammation-associated mutational signature detected in Lrig1+/âˆ’-driven murine colonic adenomas

description: Additional file 3. Raw RNA-Seq results for in Lrig1-Cre/+;Apcfl/+ colonic adenomas vs. wildtype colon.
DOI: 10.6084/m9.figshare.11858715.v1
title: Additional file 2 of Epigenetic loss of heterozygosity of Apc and an inflammation-associated mutational signature detected in Lrig1+/âˆ’-driven murine colonic adenomas

description: Additional file 2. Annotated RNA-Seq results for in Lrig1-Cre/+;Apcfl/+ colonic adenomas vs. wildtype colon.
DOI: 10.6084/m9.figshare.11858712
title: Additional file 1 of Epigenetic loss of heterozygosity of Apc and an inflammation-associated mutational signature detected in Lrig1+/âˆ’-driven murine colonic adenomas

description: Additional file 1. Somatic mutations identified in Lrig1-Cre/+;Apcfl/+ colonic adenomas.
DOI: 10.6084/m9.figshare.11858712.v1
title: Additional file 1 of Epigenetic loss of heterozygosity of Apc and an inflammation-associated mutational signature detected in Lrig1+/âˆ’-driven murine colonic adenomas

description: Additional file 1. Somatic mutations identified in Lrig1-Cre/+;Apcfl/+ colonic adenomas.
DOI: 10.6084/m9.figshare.11858664
title: Additional file 2 of DNA methylation-driven EMT is a common mechanism of resistance to various therapeutic agents in cancer

description: Additional file 2. ‘Raw patient DNA methylation data of EMT marker genes promoter regions’, is provided as a comma separated. It is the result of our novel liquid biopsy approach (see Methods section) and contains from all subjects included in this study the raw DNA methylation data of EMT marker genes promoter regions.
DOI: 10.25345/c57b38
title: MassIVE Reanalysis RMSV000000333.2 - HUPO HPP Phosphopeptide Challenge, Four Dataset TPP+PTMProphet Reanalysis
title: Raw MS data from four reports were converted to mzML and reanalyzed starting with the database search (Comet), followed by sequence validation with the Trans-Proteomic Pipeline (PeptideProhet and iProphet) and PTM localization with PTMProphet to assign probabilities to each potential phosphorylation site, compute information contents of site localizations, and test different thresholds for information content. This was done so that a complete set of unfiltered PSMs could be reanalyzed.
DOI: 10.6084/m9.figshare.11858664.v1
title: Additional file 2 of DNA methylation-driven EMT is a common mechanism of resistance to various therapeutic agents in cancer

description: Additional file 2. ‘Raw patient DNA methylation data of EMT marker genes promoter regions’, is provided as a comma separated. It is the result of our novel liquid biopsy approach (see Methods section) and contains from all subjects included in this study the raw DNA methylation data of EMT marker genes promoter regions.
DOI: 10.6084/m9.figshare.11858646
title: Additional file 2 of Comparative milk proteome analysis of Kashmiri and Jersey cattle identifies differential expression of key proteins involved in immune system regulation and milk quality

description: Additional file 2 : Table S10. Classification of significantly upregulated proteins in Kashmiri and Jersey cattle.
DOI: 10.6084/m9.figshare.11858652
title: Additional file 3 of Comparative milk proteome analysis of Kashmiri and Jersey cattle identifies differential expression of key proteins involved in immune system regulation and milk quality

description: Additional file 3. Total proteome obtained from different samples.
DOI: 10.6084/m9.figshare.11858646.v1
title: Additional file 2 of Comparative milk proteome analysis of Kashmiri and Jersey cattle identifies differential expression of key proteins involved in immune system regulation and milk quality

description: Additional file 2 : Table S10. Classification of significantly upregulated proteins in Kashmiri and Jersey cattle.
DOI: 10.6084/m9.figshare.11858652.v1
title: Additional file 3 of Comparative milk proteome analysis of Kashmiri and Jersey cattle identifies differential expression of key proteins involved in immune system regulation and milk quality

description: Additional file 3. Total proteome obtained from different samples.
DOI: 10.6084/m9.figshare.11858637
title: Additional file 1 of Comparative milk proteome analysis of Kashmiri and Jersey cattle identifies differential expression of key proteins involved in immune system regulation and milk quality

description: Additional file 1 : Table S1. Significantly upregulated proteins in Kashmiri cattle (high and low abundant proteins) Table S2. Significantly upregulated proteins in Jersey cattle (high and low abundant proteins). Table S3. Sample chromatograms of individual samples. Table S4-S6. Peptide information of significantly upregulated proteins in Jersey cattle. Table S7-S9. Peptide information of significantly upregulated proteins in Kashmiri cattle.
DOI: 10.6084/m9.figshare.11858637.v1
title: Additional file 1 of Comparative milk proteome analysis of Kashmiri and Jersey cattle identifies differential expression of key proteins involved in immune system regulation and milk quality

description: Additional file 1 : Table S1. Significantly upregulated proteins in Kashmiri cattle (high and low abundant proteins) Table S2. Significantly upregulated proteins in Jersey cattle (high and low abundant proteins). Table S3. Sample chromatograms of individual samples. Table S4-S6. Peptide information of significantly upregulated proteins in Jersey cattle. Table S7-S9. Peptide information of significantly upregulated proteins in Kashmiri cattle.
DOI: 10.6084/m9.figshare.11858604
title: Additional file 9 of Transcriptome profiles of Quercus rubra responding to increased O3 stress

description: Additional File 9: Table S5. Coexpression network data, including module membership for all genes, top hub gene for each module, and enriched GO and KEG terms for the modules most strongly correlated to experimental factors
DOI: 10.6084/m9.figshare.11858604.v1
title: Additional file 9 of Transcriptome profiles of Quercus rubra responding to increased O3 stress

description: Additional File 9: Table S5. Coexpression network data, including module membership for all genes, top hub gene for each module, and enriched GO and KEG terms for the modules most strongly correlated to experimental factors
DOI: 10.6084/m9.figshare.11858601
title: Additional file 8 of Transcriptome profiles of Quercus rubra responding to increased O3 stress

description: Additional File 8: Table S4. Profiles of clustered DGEs over time-series analysis by STEM.
DOI: 10.6084/m9.figshare.11858598
title: Additional file 7 of Transcriptome profiles of Quercus rubra responding to increased O3 stress

description: Additional File 7: Table S3. Enriched KEGG pathways of ozone stress.
DOI: 10.6084/m9.figshare.11858598.v1
title: Additional file 7 of Transcriptome profiles of Quercus rubra responding to increased O3 stress

description: Additional File 7: Table S3. Enriched KEGG pathways of ozone stress.
DOI: 10.6084/m9.figshare.11858601.v1
title: Additional file 8 of Transcriptome profiles of Quercus rubra responding to increased O3 stress

description: Additional File 8: Table S4. Profiles of clustered DGEs over time-series analysis by STEM.
DOI: 10.6084/m9.figshare.11858592
title: Additional file 5 of Transcriptome profiles of Quercus rubra responding to increased O3 stress

description: Additional File 5: Table S2. Unique and common DEGs in ozone stress.
DOI: 10.6084/m9.figshare.11858592.v1
title: Additional file 5 of Transcriptome profiles of Quercus rubra responding to increased O3 stress

description: Additional File 5: Table S2. Unique and common DEGs in ozone stress.
DOI: 10.6084/m9.figshare.11858574
title: Additional file 1 of Transcriptome profiles of Quercus rubra responding to increased O3 stress

description: Additional File 1: Table S1. Number of reads and bases produced for each RNA library used in assembly.
DOI: 10.6084/m9.figshare.11858574.v1
title: Additional file 1 of Transcriptome profiles of Quercus rubra responding to increased O3 stress

description: Additional File 1: Table S1. Number of reads and bases produced for each RNA library used in assembly.
DOI: 10.6084/m9.figshare.11858379
title: Experimental, computational and robotic data from: "Computational and robotic modeling reveal parsimonious combinations of interactions between individuals in schooling fish"

description: Experimental, computational and robotic data from: "<b>Computational and robotic modeling reveal parsimonious combinations of interactions between individuals in schooling fish</b>"with authors: Liu Lei, Ramón Escobedo, Clément Sire and Guy Theraulaz.<br>There are three zip files:1. <b>Fish.zip</b> contains a single file with the data of experiments with 5 fish (<i>H. rhodostomus</i>) in a tank of 25 cm of radius.2. <b>Agents.zip</b> contains 11 files with the data of 5 agents in an arena of radius 25 cm, for the respective interaction strategies described in the article.3. <b>Robots.zip</b> contains 10 files with the data of 5 robots (cuboids) in an arena of radius 42 cm, for the respective interaction strategies described in the article except one.<br>All dataset have the same structure of 5 columns containing the following information, in columns:<br>#1: Experiment_ID#2: fish/agent/robot identity<br>#3: time of kick of individual nº1<br>#4: x-coordinate of the individual with ID shown in column #2<br>#5: y-coordinate of the individual with ID shown in column #2<br>Time is in seconds, distances are in meters.<br>Data correspond to <i>segmented</i> trajectories, where instants of time denote the kicking time of individual #1. Data of individuals from #2 to #5 correspond to the position of the individual at the kicking instant of individual #1.<br>The 11 conditions are specified in the name of each file:<b>Strategy 0:</b> no interaction between individuals (k = 0)<br><b>Strategy 1:</b> "NEAREST": interaction with the k = 1, 2, 3 nearest neighbors<br><b>Strategy 2:</b> "RANDOM": interaction with k = 1, 2, 3 neighbors selected randomly<br><b>Strategy 3:</b> "MOST INFLUENTIAL": interaction with the k = 1, 2, 3 most influential neighbors<b>Strategy 4:</b> interaction with all the neighbors (k=4)<br>For example, for the agents simulated with the model derived in [1], the 11 files are:<br>----------------------------------------<br>0.agent-no-interaction-k0.dat<br>1.agent-nearest-k1.dat<br>1.agent-nearest-k2.dat<br>1.agent-nearest-k3.dat<br>2.agent-random-k1.dat<br>2.agent-random-k2.dat<br>2.agent-random-k3.dat<br>3.agent-mostinfluential-k1.dat<br>3.agent-mostinfluential-k2.dat<br>3.agent-mostinfluential-k3.dat<br>4.agent-all-neighbors-k4.dat<br>----------------------------------------<br>[1] D.S. Calovi, A. Litchinko, V. Lecheval, U. Lopez, A. Pérez Escudero, H. Chaté, C. Sire, G. Theraulaz (2018) Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors. PLoS Comput. Biol. 14(1):e1005933.<br>
DOI: 10.6084/m9.figshare.11858307
title: KIM_JGR_2020.zip

description: The executable MATLAB code used for estimating model calculation results (i.e., wave amplitude, wave normal angle, and plasmapause location), the data file for the solar wind parameters and geomagnetic indices used as model inputs, the coefficients, along with the minimum and maximum values for normalization procedure of input and output parameters, for each model of hiss waves, and the coefficients for the plasmapause location model
DOI: 10.6084/m9.figshare.11858322.v1
title: Chromosome Y sequences

description: A total of 37 scaffolds encompass 5.15 Mb.<br>
DOI: 10.6084/m9.figshare.11858322.v3
title: Chromosome Y sequences

description: A total of 37 scaffolds encompass 5.15 Mb.<br>
DOI: 10.6084/m9.figshare.11858307.v2
title: KIM_JGR_2020.zip

description: The executable MATLAB code used for estimating model calculation results (i.e., wave amplitude, wave normal angle, and plasmapause location), the data file for the solar wind parameters and geomagnetic indices used as model inputs, the coefficients, along with the minimum and maximum values for normalization procedure of input and output parameters, for each model of hiss waves, and the coefficients for the plasmapause location model
DOI: 10.6084/m9.figshare.11858232
title: Energy-efficient bi-objective manufacturing scheduling with intermediate buffers using a three-stage genetic algorithm

description: This is the experimental data and codes of the manuscript entitled "Energy-efficient bi-objective manufacturing scheduling with intermediate buffers using a three-stage genetic algorithm". All data are generated through computer simulation and saved in the file with csv format. The data are the simulation of the real-world case. There are five instances for these experiments, which cover multiple scales. Three attributes including time, energy and quality of services for achieving corresponding subtasks are shown in datasets.
DOI: 10.6084/m9.figshare.11858229
title: DataDOAJ

description: Database urnal yang terindeks doaj yang telah diolah untuk menganalisis lisensi dan hak ciptanya<br>
DOI: 10.6084/m9.figshare.11858160
title: F in CaCO3 Polymorphs

description: Table of calculated enthalpies of F-substituted calcite, aragonite and vaterite, in xls format. Results of VASP electronic structure calculations
DOI: 10.6084/m9.figshare.11858145
title: Data and codes for EAU

description: XZ.tif is the boundary of the study area
DOI: 10.6084/m9.figshare.11858160.v1
title: F in CaCO3 Polymorphs

description: Table of calculated enthalpies of F-substituted calcite, aragonite and vaterite, in xls format. Results of VASP electronic structure calculations
DOI: 10.6084/m9.figshare.11858142
title: Simulated mean wave direction (3-hourly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment r1i1p1f1

description: Simulated mean wave direction (3-hourly, 150a) from FIO-ESM v2.0 abrupt-4xCO2 experiment (CO2 abruptly quadrupled and then held constant) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11858094
title: 1718_MiniSAT_phase_stability

description: Data set for minisat
DOI: 10.6084/m9.figshare.11858136
title: IGA solid shell - plate in large deformation with Nitsche coupling

description: IGA solid shell - plate in large deformation with Nitsche coupling<br>This zip file contains :a) the BFGS iteration historyb) Paraview file for plate of two patches of thickness t=0.05 and t=0.005c) interface displacement along the interface of two patches<br>Author: Qingyuan Hu from JNU
DOI: 10.6084/m9.figshare.11858094.v1
title: 17_MiniSAT_phase_stability

description: Data set for minisat
DOI: 10.6084/m9.figshare.11858145.v1
title: Data and codes for EAU

description: Data 'XZ.tif' is the boundary of the study area,'SuitE. SuitF.tif, and SuitU.tif' represent the suitability of ecological land, agriculture land and urban land;'FixedX.tif' is the preserved ecological land, which cannot be used for other arrangements;All of the above data is used to achieve optimal pattern of ecological land, agriculture land and urban land;<br>'AgentUAE.m' is the code for running the agent-based model.<br>
DOI: 10.6084/m9.figshare.11858073
title: Data_Gender_and_Intermediate_Microeconomics_Grades_021420.csv

description: The data set contains the records for students who completed principles of microeconomics and intermediate microeconomics courses at a land-grant university between 2006 and 2015. Institutional records for students' demographics, measures of pre-college academic ability, and university academic records were collected with approval from the University's Internal Review Board. <br>
DOI: 10.6084/m9.figshare.11858145.v2
title: Data and codes for EAU

description: Data 'XZ.tif' is the boundary of the study area,'SuitE. SuitF.tif, and SuitU.tif' represent the suitability of ecological land, agriculture land and urban land;'FixedX.tif' is the preserved ecological land, which cannot be used for other arrangements;All of the above data is used to achieve optimal pattern of ecological land, agriculture land and urban land;<br>'AgentUAE.m' is the code for running the agent-based model.
DOI: 10.6084/m9.figshare.11858073.v1
title: Data_Gender_and_Intermediate_Microeconomics_Grades_021420.csv

description: The data set contains the records for students who completed principles of microeconomics and intermediate microeconomics courses at a land-grant university between 2006 and 2015. Institutional records for students' demographics, measures of pre-college academic ability, and university academic records were collected with approval from the University's Internal Review Board. <br>
DOI: 10.6084/m9.figshare.11858046
title: Quantum mechanics and 3D-QSAR studies on Thienopyridine analogues: inhibitors of IKKβ

description: A group of diversified thienopyridine derivatives exhibited a wide range of biological activity was used to investigate its structural requirements by using density functional theory (DFT) and the 3D-quantitative structure activity relationship
DOI: 10.6084/m9.figshare.11858145.v3
title: Data and codes for EAU

description: XZ.tif is the boundary of the study area
DOI: 10.6084/m9.figshare.11857977
title: Caregiving motivations and experiences among family caregivers of patients living with advanced breast cancer in Ghana

description: This is participants quotes supporting the conclusions drawn from the data
DOI: 10.6084/m9.figshare.11857977.v1
title: Caregiving motivations and experiences among family caregivers of patients living with advanced breast cancer in Ghana

description: This is participants quotes supporting the conclusions drawn from the data
DOI: 10.6084/m9.figshare.11857842
title: Sediment Concentration

description: The sediment concentration on natural rivers of the Yangtze River, the Yellow River, Songhua River, and West Liaohe River in China.