cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29825927
title: Arroyo, J.I. (2020). Thermodynamics, metabolic ecology, and microbial community genomics. Doctoral dissertation. Pontifical Catholic University of Chile.

description: The metabolic theory of ecology (MTE) integrates fundamental physical principles to predict biological times, rates, and properties at different levels of organization, based on body size and temperature. Here we extend the MTE by suggesting an alternative model of temperature dependence and making new predictions. In the first chapter, based on the Eyring-Polanyi equation, we derive a mechanistic but simple (three-parameter) model for temperature dependence and show how its integration with other simple chemical kinetics models allows us to predict thermodynamic parameters. The predictions of this model were supported by data from a hundred temperature response curves at different levels of organization. In the second chapter, using the general temperature dependence model derived in chapter 1, we integrate principles of metabolic ecology, macroecology, and DNA sequencing theory (the basis of metagenomics) to derive a theoretical framework for the genomic community structure of microbiomes in natural and host-associated environments, in both ectotherms and endotherms (whose body temperature varies between species). This model was supported by data from global microbiome projects. In the third chapter, we evaluated some of the predictions from chapter 2 (such as the temperature dependence of species richness, genes, and metabolisms) in microbiomes from hot springs on a global scale. These data also supported the predictions, and we further showed that other variables such as pH explain the microbial metagenomic structure.
DOI: 10.6084/m9.figshare.29825927.v1
title: Arroyo, J.I. (2020). Thermodynamics, metabolic ecology, and microbial community genomics. Doctoral dissertation. Pontifical Catholic University of Chile.

description: The metabolic theory of ecology (MTE) integrates fundamental physical principles to predict biological times, rates, and properties at different levels of organization, based on body size and temperature. Here we extend the MTE by suggesting an alternative model of temperature dependence and making new predictions. In the first chapter, based on the Eyring-Polanyi equation, we derive a mechanistic but simple (three-parameter) model for temperature dependence and show how its integration with other simple chemical kinetics models allows us to predict thermodynamic parameters. The predictions of this model were supported by data from a hundred temperature response curves at different levels of organization. In the second chapter, using the general temperature dependence model derived in chapter 1, we integrate principles of metabolic ecology, macroecology, and DNA sequencing theory (the basis of metagenomics) to derive a theoretical framework for the genomic community structure of microbiomes in natural and host-associated environments, in both ectotherms and endotherms (whose body temperature varies between species). This model was supported by data from global microbiome projects. In the third chapter, we evaluated some of the predictions from chapter 2 (such as the temperature dependence of species richness, genes, and metabolisms) in microbiomes from hot springs on a global scale. These data also supported the predictions, and we further showed that other variables such as pH explain the microbial metagenomic structure.
DOI: 10.15468/dl.s4q2xk
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa micrantha",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 65 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012899-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6v53e5
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum nigrum",
 "Country is Angola",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012900-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qg6n26
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACI9443"
 ]
}

 The dataset includes 21 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012901-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aztzh8
title: Occurrence Download

description: A dataset containing 431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (, , , Panthera pardus fusca, , , , , )",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 431 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012904-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtdnp3
title: Occurrence Download

description: A dataset containing 27596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melanerpes striatus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 27596 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012903-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v2x4p8
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "TaxonKey is Bougainvillea spectabilis",
 "Year 1970-2025"
 ]
}

 The dataset includes 77 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012905-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s28ce7
title: Occurrence Download

description: A dataset containing 4420 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cystopteris fragilis",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4420 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012906-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qv9r8q
title: Occurrence Download

description: A dataset listing the 800 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((129.47556 -2.49301,135.02307 -2.49301,135.02307 1.04011,129.47556 1.04011,129.47556 -2.49301))",
 "HasGeospatialIssue is false",
 "TaxonKey is Liliopsida"
 ]
}

 The dataset's 800 records were derived from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012893-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ptnds
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Johnius weberi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012907-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5y435c
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa pendulina",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 161 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012908-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25whha
title: Occurrence Download

description: A dataset containing 155689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melanerpes pucherani)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 155689 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012881-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxzsv3
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAI5725"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012910-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rnbafp
title: Occurrence Download

description: A dataset containing 27681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melanerpes superciliaris)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 27681 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012911-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkszyh
title: Occurrence Download

description: A dataset containing 1471 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum nigrum",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1471 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012909-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2fbra
title: Occurrence Download

description: A dataset containing 1296918 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-06-09",
 "EventDate is less than or equal to 2025-07-09",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 1296918 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012888-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3upmj
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Noccaea stenocarpa",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012912-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rx255d
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum nigrum",
 "Country is Belarus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 87 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012913-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vp4gcu
title: Occurrence Download

description: A dataset containing 487 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dexillus muelleri"
 ]
}

 The dataset includes 487 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012915-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sk4bbz
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trichomycterus mimosensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012916-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdrbha
title: Occurrence Download

description: A dataset containing 9877 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melaniparus afer)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 9877 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012918-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gem2qz
title: Occurrence Download

description: A dataset containing 3413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus bifrons",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3413 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012919-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zq5r6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Ictinia mississippiensis)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012920-250802193616735/datasets/export for details.
DOI: 10.15468/dl.8r3hta
title: Occurrence Download

description: A dataset containing 1587 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxyria digyna",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1587 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012922-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.trwzt2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACM3991"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012923-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4a9rq
title: Occurrence Download

description: A dataset containing 18176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum nigrum",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18176 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012924-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ch4qmh
title: Occurrence Download

description: A dataset containing 7740 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melaniparus albiventris)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 7740 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012925-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x7sd95
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum nigrum",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 67 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012927-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aeb3c4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Brachyrhamdia rambarrani)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012926-250802193616735/datasets/export for details.
DOI: 10.15468/dl.77dgmr
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Coragyps atratus)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 24 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012930-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxs7yz
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Living Specimen)",
 "Country is Colombia",
 "DatasetKey is one of (Herbario Nacional Colombiano (COL), ICN - Universidad Nacional de Colombia, Field Museum of Natural History (Botany) Seed Plant Collection, University of Amsterdam (NL) - Páramo Vegetation Research, Rabanal, Guerrero and Villa de Leyva paramo complex, Colombia, Herbario Pontificia Universidad Javeriana, Herbario Universidad de Antioquia (HUA), Monitoreo de la cobertura vegetal mediante parcelas permanentes en el área de influencia del Proyecto Hidroeléctrico Ituango, Herbario Museo de La Salle Bogotá (BOG), Herbario CDMB - Jardín Botánico Eloy Valenzuela, Tejidos colectados en la expedición al municipio Santa Bárbara, Santander - Proyecto Santander BIO)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (eac88d99-9f6c-4031-8fc4-8088f0e0dfe7, 7b8aff00-a9f8-11d8-944b-b8a03c50a862, 1f55bd0a-6ebe-49a1-8a9c-9258702b6f46, 0e2f2e28-7790-4c82-b8fb-6ef7b4c764e2, cccff716-2694-4209-9f9e-2f7a484465a0, 478a9e81-e716-42dc-a68d-03487953a32e, 7a079928-aee9-418a-b083-6152d01c78d6, d42b7e5d-a3e5-4fc2-8b3d-105336d70898, 2a7e3080-28a9-11dd-97cd-b8a03c50a862)",
 "TaxonKey is Odontoglossum"
 ]
}

 The dataset includes 90 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012931-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjazkg
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astragalus bounophilus",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012932-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.