cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25170701.v1
title: Evaluating Riboglow-FLIM probes for RNA sensing

description: The files were posted as .zip files - in order to access the files please download them to see them clearly. We recently developed Riboglow-FLIM, where we genetically tag and track RNA molecules in live cells through measuring the fluorescence lifetime of a small molecule probe that binds the RNA tag. Here, we systematically and quantitatively evaluated key elements of Riboglow-FLIM that may serve as the foundation for Riboglow-FLIM applications and further tool development efforts. Our investigation focused on measuring changes in fluorescence lifetime of representative Riboglow-FLIM probes with different linkers and fluorophores in different environments. <i>In vitro</i> measurements revealed distinct lifetime differences among the probe variants as a result of different linker designs and fluorophore selections. To expand on the platform's versatility, probes in a wide variety of mammalian cell types were examined using fluorescence lifetime imaging microscopy (FLIM), and possible effects on cell physiology were evaluated by metabolomics. The results demonstrated that variations in lifetime were dependent on both probe and cell type. Interestingly, distinct differences in lifetime values were observed between cell lines, while no overall change in cell health was measured. These findings underscore the importance of probe selection and cellular environment when employing Riboglow-FLIM for RNA detection, serving as a foundation for future tool development and applications across diverse fields and biological systems.
DOI: 10.6084/m9.figshare.14151659.v2
title: "Drivers and constraints of on-farm diversity. A review. Dataset"

description: This dataset has been uploaded on figshare to complement the review article: "Drivers and constraints of on-farm diversity. A review". This review article has been submitted to the journal "Agroforestry for sustainable development".It consists in the data extracted from 97 articles (published between Jan 2010 and Dec 2019) selected for the review article. The articles were selected as focusing on the drivers and constraints at farm scale of on-farm diversification.The dataset consists of 3 spreadsheets:1. Articles for data extraction (n=73);2. Articles for discussion (n=24);3. Metadata.<br>The Spreadsheet “1. Articles for data extraction” includes information about:• definitions (crop diversification, agroforestry, etc.) and measures (species richness, Simpson index, etc.) of on-farm diversity used in the selected articles.• the variables studied as drivers or constraints of on-farm diversity and their effect on on-farm diversity. The effect size was assessed as significantly positive, significantly negative, significant (for categorical variables without directional effect) or statistically not significant.• the quantitative method used to analyse the relationship between the selected variables and on-farm diversity.• the geographical location(s) covered by the analysis.<br>The Spreadsheet “2. Articles for discussion” includes the articles that were not used to extract data but were still relevant for the topic and the discussion of the results.
DOI: 10.6084/m9.figshare.19703485.v1
title: Marine_and_Coastal_Horizon_Scan_Data.xlsx

description: Data from the voting rounds of the Marine and Coastal Horizon Scan 2021/2022. Data include: 1) Issue number for the first round of voting, 2) Final rank of each issue after the first round of voting, 3) Proportion of people who had heard of the issue, 4) Issue number for the second round of voting, 5) Final rank of each issue after the second round of voting, 6) Identifier showing whether the issue was included in the paper or not, 7) The number of the issue as presented in the paper. We identified one issue that had been incorrectly grouped with three others after the first round of voting, and therefore presented this as a separate issue in the second round. In the second round, this issue was ranked 18th with a heard of score of 0.77.
DOI: 10.6084/m9.figshare.29064989.v1
title: <b>The Principles of Nazi Propaganda</b>

description: This article explores the core principles of Nazi propaganda, focusing on its communicative structure, rhetorical strategies, and psychological manipulation. Through analysis of Hitler’s speeches and the propaganda apparatus led by Joseph Goebbels, it identifies the systematic use of simplicity, repetition, saturation, and emotional language. A multidisciplinary framework incorporating semiotics, pragmatics, and elements of neurolinguistic programming helps illustrate how these mechanisms served to consolidate power in the Nazi regime.Este artículo examina los principios fundamentales que rigieron la propaganda del régimen nacionalsocialista, haciendo énfasis en su diseño comunicacional, eficacia retórica y manipulación psicológica. A través del análisis del discurso de Hitler y del aparato propagandístico liderado por Joseph Goebbels, se identifican estrategias como la simplicidad, la repetición, la saturación y el uso emocional del lenguaje. Se integra un enfoque multidisciplinario basado en semiótica, pragmática y programación neurolingüística, destacando cómo estos mecanismos fueron aplicados para consolidar el poder político del Tercer Reich.<br>
DOI: 10.6084/m9.figshare.14191724.v1
title: Career Transition to Research Leadership in Africa Transcript - Interview 5.pdf

description: Career transition to research leadership, transcript of qualitative interview with research leader 5
DOI: 10.6084/m9.figshare.1538580.v2
title: Visualizing group data

description: The code and example data used in my blog post 'Visualising group data':https://neuroneurotic.wordpress.com/2015/09/09/visualising-group-data<br><br>Uses the data set from this study by Thorstenson et al 2015 (http://www.ncbi.nlm.nih.gov/pubmed/26307592) as an example. The original data can be found here: https://osf.io/sb58f/<br><br>This archive includes my cateye Matlab function for creating cat-eye/violin plots.
DOI: 10.6084/m9.figshare.20226258.v1
title: Normalized Remote Sensing Agricultural GPP Monsoon 2002

description: agricultural gross primary productivity
DOI: 10.6084/m9.figshare.24566494.v2
title: <b>Long-term soil warming decreases soil microbial necromass carbon by adversely affecting its production and decomposition</b>

description: This dataset is for the article "Long-term soil warming reduces soil microbial necromass carbon by affecting its production and decomposition adversely."
DOI: 10.6084/m9.figshare.28288019.v3
title: Coding sheet of the Prabowo Gemoy TikTok Samples

description: #Prabowogemoy is a distinctively Indonesian campaign communication, formulated with unique vocabulary to the Indonesian language during a specific election cycle. This research opts for the constant comparative method to provide flexibility to articulate the character dimensions associated with #PrabowoGemoy. The goal was to develop a typology that defined Prabowo Gemoy, firmly grounded in the Tiktok Video sample. The research procedure began by individually scrutinizing one TikTok video at a time, dichotomizing them into either policy or character topics. If said Tiktok sample was classified as 'character', I then considered a second category: what character themes does this sample discuss? Is it personal quality, leadership ability, or ideals? If said video meets the criteria of a) character discussion and b) personal quality, I then proceed to establish a tentative typology. We examined all TikTok videos that meet those criteria one at a time noting each video's text, visual cues, and audio. The typologies are usually one-word adjectives that can easily be identifiable as a coding component. When the new TikTok video scrutinized appeared to be similar to a previously developed typology category, we listed that Video under the same category. On the other hand, if a TikTok video provided a new category, we would add that adjective into the code book. This research continually reevaluated categories, altered new categorical schemes, and re coded samples to the emerging categories.
DOI: 10.6084/m9.figshare.21225389.v1
title: lastdatabase - Copy.rar

description: The Database for Mastology Research with Infrared Image (DMR-IR) was developed in 2014 during the PROENG Project at the Institute of Computer Science of the Federal Fluminense University in Brazil. It is currently the only public dataset of breast thermograms It is used to evaluate the proposed methods in this thesis. This database is created by collecting the IR images from the Hospital of UFF University and published publicly with the approval of the ethics committee where consent should be signed by any patient.
DOI: 10.6084/m9.figshare.28852421.v1
title: <b>Whole-Transcriptome Sequencing and Differential Expression Analysis of the Epididymis in Junggar Bactrian Camels Before and After Sexual Maturity</b>

description: The Junggar Bactrian camel, a primitive indigenous breed in China, exhibits low reproductive efficiency under natural grazing conditions. This is partly attributed to the development of the epididymis and the quality of semen, both of which directly affect reproductive performance. The epididymis is a key male reproductive organ responsible for sperm storage and transport. However, the gene expression profile of camel epididymal tissue remains poorly understood. In this study, we conducted whole-transcriptome sequencing of epididymal tissues from Junggar Bactrian camels before and after sexual maturity. A total of 683 differentially expressed mRNAs (DE mRNAs) were identified, including TPM2, ITGA5, FASN, and ACP5, of which 415 were upregulated and 268 were downregulated. Additionally, 260 differentially expressed long non-coding RNAs (DElncRNAs), including LOC123611838, LOC105083505, and LOC123614702, were identified, with 113 upregulated and 147 downregulated. 11 differentially expressed microRNAs (DEmiRNAs), including eca-miR-206 and eca-miR-216a, were also detected. Gene Ontology (GO) annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses revealed that key differentially expressed genes (DEGs), including TPM2, ITGA5, DDIT4, FASN, and ACP5, were mainly involved in pathways such as Cell Adhesion Molecules, Phospholipase D signaling, Cytokine-Cytokine Receptor Interaction, and Olfactory Transduction. This study presents a comprehensive whole-transcriptome analysis of the epididymis in Junggar Bactrian camels before and after sexual maturity, identifying key genes and regulatory pathways associated with epididymal development and reproductive function. These findings provide a theoretical foundation and valuable data for future research on reproductive performance and epididymal biology in Bactrian camels.
DOI: 10.17605/osf.io/6w5ek
title: Drone Crash Test Database

description: The aim of the database is to serve as a knowledge-based, validation tool for new test facilities or research and as a tool for the purposes of the safety assessment.
DOI: 10.6084/m9.figshare.25569210.v1
title: Sup. Data D10.xlsx

description: Intersectioally connected red colour: Up-regulated, green colour: Down-regulated;
DOI: 10.6084/m9.figshare.27959226.v1
title: Maternal Plasma Cell-free RNA as a Predictive Test for Fetal Lung Maturation

description: Raw data corresponding to the manuscript on the development of a cfRNA test for fetal lung maturation
DOI: 10.6084/m9.figshare.14135021.v1
title: Fractional crystallization causes the iron isotope contrast between mid-ocean ridge basalts and abyssal peridotites

description: Supplementary Information and Supplementary data 1-4 for the paper entitled "Fractional crystallization causes the iron isotope contrast between mid-ocean ridge basalts and abyssal peridotites". Topography data from Smith and Sandwell (1997) used to reproduce Figure 1b are also provided here. The files with Petrolog_Output prefix are the output of Petrolog3, which can be used to reproduce Figure 3.<br>
DOI: 10.6084/m9.figshare.21578898.v1
title: Salinity, temperature, and turbidity observations during 2000-2021 for Chesapeake Bay

description: Salinity, temperature, and turbidity from 2000–2021 in the Chesapeake Bay.
DOI: 10.6084/m9.figshare.25887199.v4
title: Vriesea_erythrodactylon genome and annotation

description: Our research (Tracing the evolutionary and genetic footprints of air plants transition from land to air) assembled the genome of the <i>Vriesea_erythrodactylon</i> and annotation information (file: GENOME GFF CDS PEP )
DOI: 10.6084/m9.figshare.5401837.v1
title: ALARM NMR data - HAT inhibitors

description: Representative [<sup>1</sup>H-<sup>13</sup>C]-HMQC ALARM NMR spectra for reported histone acetyltransferase inhibitors. ALARM NMR is a protein-based NMR counter-screen for flagging potentially promiscuous and/or assay interference compounds in drug and chemical probe discovery.<br><br>Human La antigen (50 uM final concentration) was incubated with reported HAT inhibitors (400 uM final concentration) in 25 mM sodium phosphate, pH 7.0, 10% D<sub>2</sub>O, in the presence or absence of DTT (0 or 25 mM final concentration).<br><br>Data was obtained on a 700 MHz Bruker Avance NMR spectrometer equipped with TCI Cryoprobe. Compressed files (.zip) are in standard Bruker format and were analyzed in TopSpin 3.5.<br><br>Controls: DMSO (vehicle), CPM (thiol-reactive control compound), fluconazole (negative control compound).<br><br>Files are listed according to compound tested (number in accompanying manuscript) and DTT status (DTT, NoDTT).<br>
DOI: 10.6084/m9.figshare.23496929.v1
title: DataSet

description: DSC data
DOI: 10.6084/m9.figshare.25303665.v2
title: FileS2. from Mechanical and elemental characterization of ant mandibles: consequences for bite mechanics

description: Finite element mesh used in the simulations of the present manuscript.
DOI: 10.6084/m9.figshare.11888304.v1
title: Additional file 12 of Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions

description: Additional file 12: Table S6. Number of passed filter reads for somatic samples.
DOI: 10.6084/m9.figshare.14916552.v1
title: SuppData1A.tab

description: Model predictions on test data: Mono-allelic mass spectrometry data.
DOI: 10.6084/m9.figshare.28651787.v1
title: Multiscale STWSI using the optimal distributions of terrestrial water storage across global 40 major basins over 2002-2022

description: A GRACE-based standardized drought index (STWSI) was constructed using the optimal distributions of terrestrial water storage across global 40 major basins over 2002-2022. The STWSI for 1,3,6,12 month scales has been provided.Citation:Ren Chanyue, Zhang Xuanze, et al., 2025, Constructing a new terrestrial water storage index for better understanding hydrological droughts in large river basins, in reviewRen CY, Zhang XZ, Zhang YQ, 2025, Multiscale STWSI using the optimal distributions of terrestrial water storage across global 40 major basins over 2002-2022. doi:10.6084/m9.figshare.28651787.
DOI: 10.6084/m9.figshare.23523096.v5
title: Experimental warming altered plant functional traits and their coordination in a permafrost ecosystem

description: The dataset shows the raw data for our paper ' Experimental warming altered plant functional traits and their coordination in a permafrost ecosystem', and contains a series of individual-level trait values and community-level trait means as well as functional diversity.
DOI: 10.6084/m9.figshare.27216117.v2
title: bip2024

description: Summary statistics from the Psychiatric Genomics Consortium
DOI: 10.6084/m9.figshare.11374449.v2
title: Dataset_Reproducibility

description: Dataset of CCT, Ishihara and Lanthony.
DOI: 10.6084/m9.figshare.11999586.v2
title: Assembly of Nymphon striatum

description: De novo assembly sequence of Nymphon striatum and its repeat-masked sequence provided with customized RepBase24.03 library file which was applied to mask repeat elements.<br>Sea-spider.unmasked.scaffolds.fasta : Gap closed assembly of N. striatum<br>Sea-spider_repeatmasked.zip : Repeat masked N. striatum genome output from RepeatMasker containing .cat, .masked, .out and .tbl files<br>RepBase24.03.fasta.parsed.fasta : Cutomized RepBase library file used for repeats annotation by RepeatMasker<br>
DOI: 10.23644/uu.11659344.v1
title: SPSS files for experiment

description: Analysis SPSS files used in the paper to analyze the experiment results. The tests we executed in the paper are as follows, in the SPSS syntax:<br>** PreQuestionnaire.sav, leading to Table 2<br><br>T-TEST GROUPS=form(1 2)<br> /MISSING=ANALYSIS<br> /VARIABLES=grade USLEC UCLEC<br> /CRITERIA=CI(.95).<br>NPAR TESTS<br> /M-W= CDFAM UCFAM USFAM UCHW USHW CDHW BY form(1 2)<br> /MISSING ANALYSIS.<br>** Anova.sav, leading to the decision of analyzing the two case studies independently<br>GLM EntRec EntPre RelRec RelPre TotRec TotPre AdjRelRec AdjRelPre AdjTotRec AdjTotPre BY Domain Form<br> /METHOD=SSTYPE(3)<br> /INTERCEPT=INCLUDE<br> /POSTHOC=Domain Form(TUKEY)<br> /PLOT=PROFILE(Domain*Form) TYPE=LINE ERRORBAR=NO MEANREFERENCE=NO YAXIS=AUTO<br> /PRINT=DESCRIPTIVE ETASQ<br> /CRITERIA=ALPHA(.05)<br> /DESIGN= Domain Form Domain*Form.<br><br>** DH.sav, leading to Table 3<br>T-TEST GROUPS=Form(1 2)<br> /MISSING=ANALYSIS<br> /VARIABLES=EntRec EntPre RelRec RelPre TotRec TotPre AdjRelRec AdjRelPre AdjTotRec AdjTotPre<br> /CRITERIA=CI(.95).<br><br>** PH.sav, leading to Table 4<br>T-TEST GROUPS=Form(1 2)<br> /MISSING=ANALYSIS<br> /VARIABLES=EntRec EntPre RelRec RelPre TotRec TotPre AdjRelRec AdjRelPre AdjTotRec AdjTotPre<br> /CRITERIA=CI(.95).<br>** Preferences.sav, leading to Table 5 and Table 6<br>NPAR TESTS<br> /M-W= UCCM USCM UCCDID USCDID UCRID USRID USSTRUCT UCSTRUCT UCOVER USOVER UCREQ USREQ BY Form(1 2)<br> /MISSING ANALYSIS.<br><br>EXAMINE VARIABLES=UCCM USCM UCCDID USCDID UCRID USRID USSTRUCT UCSTRUCT UCOVER USOVER UCREQ USREQ<br> BY Form<br> /PLOT HISTOGRAM NPPLOT<br> /STATISTICS DESCRIPTIVES<br> /CINTERVAL 95<br> /MISSING LISTWISE<br> /NOTOTAL.<br><br>NPAR TESTS<br> /M-W= UCCM USCM UCCDID USCDID UCRID USRID USSTRUCT UCSTRUCT UCOVER USOVER UCREQ USREQ BY Form(1 2)<br> /STATISTICS=DESCRIPTIVES<br> /MISSING ANALYSIS.<br><br>GLM EntRec EntPre RelRec RelPre TotRec TotPre AdjRelRec AdjRelPre AdjTotRec AdjTotPre BY Domain Form<br> /METHOD=SSTYPE(3)<br> /INTERCEPT=INCLUDE<br> /POSTHOC=Domain Form(TUKEY)<br> /PLOT=PROFILE(Domain*Form) TYPE=LINE ERRORBAR=NO MEANREFERENCE=NO YAXIS=AUTO<br> /PRINT=DESCRIPTIVE ETASQ<br> /CRITERIA=ALPHA(.05)<br> /DESIGN= Domain Form Domain*Form.<br><br><br><br><br><br>
DOI: 10.6084/m9.figshare.15060789.v1
title: Principal Component Analysis (PCA) of quantification results from SCoPE2 analysis

description: Evaluating protein quantification results from SCoPE2 analysis. (a) Distributions of relative reporter ion (RI) intensities for all samples from a single SCoPE2 set. The samples include carrier, reference, 5 single HeLa cells, 5 single U937 cells, a negative control well (Ctr −), and a positive control well (Ctr +) from diluted U937 cell lysate. Two of the TMT labels (between the reference and the single cells) are not used because they are affected by isotopic impurities of the TMT labels used for the carrier and the reference. The bin marked by &gt; −3.5 corresponds mostly to RI intensities below the detection limit (missing values). (b) Distributions of coefficients of variation (CVs) for the relative quantification of proteins based on different peptides originating from the same protein. The CVs are computed both for the single cells and the negative control wells. (c) Principal component analysis (PCA) of 126 single cells and bulk samples. The PCA is based on 1756 proteins with about 1,000 proteins quantified per single cell. Panels b and c are generated by the SCoPE2 pipeline. For more details see: https://scope2.slavovlab.net/mass-spec/protocol
DOI: 10.6084/m9.figshare.29118395.v1
title: <b>Data and R codes for Shi </b><b><i>et al.</i></b><b> Strategic dynamics in response to grazing and biotic resistance facilitate successful invasion of a widespread invader, </b><b><i>Solanum rostratum</i></b><b>, in northern China</b>

description: The role of functional strategies in mediating invasion success has been extensively investigated, yet how the plasticity of these strategies enables invaders to thrive and maintain their dominance under various environmental and community contexts remains poorly understood. Here, we explored the invasion mechanisms of <i>Solanum rostratum</i> across a 3,000 km invasion gradient in northern China under Grime’s competitor, stress tolerator, and ruderal (CSR) framework. While<i> </i><i>S. rostratum</i> consistently exhibited a higher investment in C-strategy compared to native species, it demonstrated plastic shifts between S- and R- strategies. These strategic shifts were primarily influenced by the CSR strategy and species composition of native communities, which selected for greater strategic divergence between <i>S. rostratum</i> and native species. Grazing also modulated these shifts by altering the phylogenetic and functional compositions of native communities. By increasing its strategic divergence from native competitors, <i>S. rostratum</i> may persist in species diverse native community and capitalize on transient nutrient pulses created by disturbances. Our findings challenged the traditional notion of a fixed invasion syndrome, revealing dynamical changes across space and invasional stages. This underscores the critical importance of considering the dynamics of invasion syndrome in future research, providing a more nuanced and comprehensive understanding of the processes driving invasion success.
DOI: 10.6084/m9.figshare.6832166.v1
title: Silicon Nanostructuring Using SF6/O2 Downstram Plasma Etching: Morphological, Optical and Sensing Properties

description: Silicon (Si) nanostructures were prepared in the downstream of radiofrequency SF6/O2 mixture plasma generated in 13.56 MHz hollow cathode discharge system. Depending on the oxygen percentage in the mixture, the obtained Si nanostructures were characterized for their different properties: etching rate, morphology, optical reflectance, photoluminescence, spectral response and humidity sensing. It is found that the etching rate exhibits a maximum value when the O2 ratio reaches 5%. An interesting defect-induced "violet" luminescence is reported from the Si nanostructures, whose intensity depends on their density. The obtained Si nanostructures have shown to induce a spectral response (SR) enhancement, in comparison with a smooth Si substrate, of about 100 times at 1100 nm wavelength. A very short response time (1 sec) to the humidity was measured for 5% O2 in the SF6/O2 plasma mixture, which was found to be well-correlated with the porosity of the Si nanostructures.
DOI: 10.6084/m9.figshare.12153582.v1
title: Figure4_raw_data

description: Raw data for Figure 4 ab1 files
DOI: 10.6084/m9.figshare.14754374.v2
title: PAIRS_dataset

description: Test dataset for PAIR-R24M dataset.
DOI: 10.6084/m9.figshare.17207183.v2
title: A global dataset of pandemic- and epidemic-prone disease outbreaks

description: Here can be found a new dataset of infectious disease outbreaks collected from the Disease Outbreak News and the Coronavirus Dashboard produced by the World Health Organization. The unit of analysis in the database is an outbreak that happens when a country has at least one case of a specific disease during a particular year. Thus, a specific country cannot have two outbreaks related to the same disease in the same year (but can have more than one outbreak of different diseases in the same year). Moreover, a country can only have more than one outbreaks of the same disease, if and only if they refer to different years. Target applications could focus on combining our data with other information sources to study, for instance, the link between , geographical, environmental, globalization, and/or socioeconomic factors with disease outbreaks.
DOI: 10.6084/m9.figshare.27311421.v1
title: Snowmelt runoff

description: Snowmelt runoff data monitored on slopes, including information on air temperature, sediment, thaw depth, and flow parameters.