cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dhx287
title: Occurrence Download

description: A dataset containing 4206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Solenopsis invicta Buren, 1972"
 ]
}

 The dataset includes 4206 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074987-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkyaz2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Thamnobryum fruticosum (Mitt.) Gangulee"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081653-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4swdak
title: Occurrence Download

description: A dataset containing 212368 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dilleniaceae"
 ]
}

 The dataset includes 212368 records from 600 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240157-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.carbdd
title: Occurrence Download

description: A dataset containing 499 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Girardinichthys multiradiatus (Meek, 1904)"
 ]
}

 The dataset includes 499 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077976-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hb7t5y
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is In situ observations of Stygiomedusa gigantea",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 109 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067180-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3q5qep
title: Occurrence Download

description: A dataset containing 6096 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hoplias malabaricus (Bloch, 1794)"
 ]
}

 The dataset includes 6096 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295321-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5puwbs
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Marchantiophyta"
 ]
}

 The dataset includes 55 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033791-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.978em3
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alpinia oceanica Burkill"
 ]
}

 The dataset includes 194 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077979-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxgy1g
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Baccharis davidsonii Cuatrec."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008445-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.spv38g
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Etlingera steringophora A.D.Poulsen"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0284142-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25942492
title: Supplementary Material for: Comprehensive analysis of ceRNA network and immune cell infiltration pattern of autophagy related genes in IgA nephropathy

description: Abstract 
Introduction: IgA nephropathy (IgAN) is a prevalent worldwide glomerular disease with a complex pathophysiology that has significant economic implications. Despite the lack of successful research, this study aims to discover the potential competing endogenous RNA (ceRNA) network of autophagy-associated genes in IgAN and examine their correlation with immune cell infiltration.
Methods: Autophagy-related hub genes were discovered by assessing the GSE116626 dataset and constructing a protein-protein interaction network. Nephroseq v5 analysis engine was used to analyze correlations between hub genes and proteinuria, glomerular filtration rate (GFR) and serum creatinine levels. Then, a ceRNA network construction and the CIBERSORT tool for immune cell infiltration analysis were also performed. Additionally, the differentially expressed autophagy-related genes (DEARGs) were used to predict potential targeted medications for IgAN.
Results: 1396 differentially expressed genes (DEGs) were identified in IgAN along with 25 autophagy-related differentially expressed messenger RNAs (DEmRNAs). Enrichment analysis revealed significant involvement of autophagy and apoptosis in biological processes. Next, we evaluated the top hub nodes based on their highest degrees. The ability of IgAN discrimination was confirmed in the GSE35487 and GSE37460 datasets by validating the five hub genes: SIRT1, FOS, CCL2, CDKN1A and MYC. In the Nephroseq v5 analysis engine, the clinical correlation of the five hub genes was confirmed. Furthermore, the ceRNA network identified 18 circular RNAs and 2 microRNAs associated with hub autophagy-related genes in IgAN. Our investigation identified hsa-miR-32-3p and hsa-let-7i-5p as having elevated expression levels and substantial diagnostic value. Finally, four distinctively infiltrated immune cells were found to be associated with the hub autophagy-related genes, and 67 drugs were identified as potential therapeutic options for IgAN.
Conclusion: This study sheds light on a novel ceRNA regulatory network mechanism associated with autophagy in IgAN development.
Keywords: ImmunoglobulinA nephropathy, Autophagy, ceRNA, Immune cell.
DOI: 10.6084/m9.figshare.25942492.v1
title: Supplementary Material for: Comprehensive analysis of ceRNA network and immune cell infiltration pattern of autophagy related genes in IgA nephropathy

description: Abstract 
Introduction: IgA nephropathy (IgAN) is a prevalent worldwide glomerular disease with a complex pathophysiology that has significant economic implications. Despite the lack of successful research, this study aims to discover the potential competing endogenous RNA (ceRNA) network of autophagy-associated genes in IgAN and examine their correlation with immune cell infiltration.
Methods: Autophagy-related hub genes were discovered by assessing the GSE116626 dataset and constructing a protein-protein interaction network. Nephroseq v5 analysis engine was used to analyze correlations between hub genes and proteinuria, glomerular filtration rate (GFR) and serum creatinine levels. Then, a ceRNA network construction and the CIBERSORT tool for immune cell infiltration analysis were also performed. Additionally, the differentially expressed autophagy-related genes (DEARGs) were used to predict potential targeted medications for IgAN.
Results: 1396 differentially expressed genes (DEGs) were identified in IgAN along with 25 autophagy-related differentially expressed messenger RNAs (DEmRNAs). Enrichment analysis revealed significant involvement of autophagy and apoptosis in biological processes. Next, we evaluated the top hub nodes based on their highest degrees. The ability of IgAN discrimination was confirmed in the GSE35487 and GSE37460 datasets by validating the five hub genes: SIRT1, FOS, CCL2, CDKN1A and MYC. In the Nephroseq v5 analysis engine, the clinical correlation of the five hub genes was confirmed. Furthermore, the ceRNA network identified 18 circular RNAs and 2 microRNAs associated with hub autophagy-related genes in IgAN. Our investigation identified hsa-miR-32-3p and hsa-let-7i-5p as having elevated expression levels and substantial diagnostic value. Finally, four distinctively infiltrated immune cells were found to be associated with the hub autophagy-related genes, and 67 drugs were identified as potential therapeutic options for IgAN.
Conclusion: This study sheds light on a novel ceRNA regulatory network mechanism associated with autophagy in IgAN development.
Keywords: ImmunoglobulinA nephropathy, Autophagy, ceRNA, Immune cell.
DOI: 10.15468/dl.jxur8t
title: Occurrence Download

description: A dataset containing 10996413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 10996413 records from 1000 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035196-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.806992
title: Openearth/Glofrim: Release For Submission Gmd

description: Release that accompanies manuscript as submitted by Geoscientific Model Development

Contains all code, files, and models (except Delft3D Flexible Mesh) required for establishing GLOFRIM, a globally applicable computational framework for integrated hydrological-hydrodynamic modelling.
DOI: 10.1285/i20398573v1n1p62
title: Frontespizio e pagine iniziali
DOI: 10.17909/t9460x
title: LAMP Failsafe Cal Stars

description: IUE observations of gamma Gru and beta CMa.
DOI: 10.5281/zenodo.807616
title: Scenario Simulations Of The Changing Black Sea Ecosystem (Simsea)

description: The regional Black Sea ecosystem model (BSEM) has been applied for the first time for biogeochemical simula­tions of the Black Sea ecosystem (Oguz, T., H. W. Ducklow, J. E. Purcell, and P. Malanotte-Rizzoli (2001), Modeling the response of topdown control exerted by gelatinous carnivores on the Black Sea pelagic food web. J. Geophys. Res., 106, 4543–4564). The BSEM model is able to describe the Black Sea specific features as demonstrated by the analysis presented herein. One of the key modification of the existing models is the introduction of two new components - the carnivore predators <em>Mnemiopsis</em> and <em>Noctiluca shunt.</em> Originally they began to exist in the lower trophic Black sea food web since the 80s. They feed on zooplankton and are responsible for the reduction of zooplankton standing stock that represents an ecological concern. Detailed description of the BSEM can be found in Miladinova S., A. Stips, E. Garcia-Gorriz, D. Macias Moy (2016c), Modelling Toolbox 2: The Black Sea ecosystem model, EUR 28372 EN, doi:10.2788/677808.

The model is coupled to the General Estuarine Transport Model (GETM). It is forced with fluxes, obtained from realistic meteorological condi­tions and tuned for the Black Sea ecosystem in particular. The main advantage of the GETM-BSEM model set-up for the Black Sea is the possibility to study: (i) the long-term evolution of the Black Sea ecosystem; (ii) the effect of nutrient load and regional weather on the biogeochemical structure.

Data sets consists of monthly mean values of total phytoplankton (large + small) and nitrate concentrations on a horizontal grid of 423x172 data points (2 longitude minutes x 2 latitude minutes) and 70 vertical levels. Simulations are performed for the period from 1960 to 2014 (55 years). The 3D monthly mean vertical coordinate (m), phytoplankton (mmol N/m**3) and nitrate (mmol N/m**3) are stored in NetCDF format.
DOI: 10.5281/zenodo.807617
title: Scenario Simulations Of The Changing Black Sea Ecosystem (Simsea)

description: The regional Black Sea ecosystem model (BSEM) has been applied for the first time for biogeochemical simula­tions of the Black Sea ecosystem (Oguz, T., H. W. Ducklow, J. E. Purcell, and P. Malanotte-Rizzoli (2001), Modeling the response of topdown control exerted by gelatinous carnivores on the Black Sea pelagic food web. J. Geophys. Res., 106, 4543–4564). The BSEM model is able to describe the Black Sea specific features as demonstrated by the analysis presented herein. One of the key modification of the existing models is the introduction of two new components - the carnivore predators <em>Mnemiopsis</em> and <em>Noctiluca shunt.</em> Originally they began to exist in the lower trophic Black sea food web since the 80s. They feed on zooplankton and are responsible for the reduction of zooplankton standing stock that represents an ecological concern. Detailed description of the BSEM can be found in Miladinova S., A. Stips, E. Garcia-Gorriz, D. Macias Moy (2016c), Modelling Toolbox 2: The Black Sea ecosystem model, EUR 28372 EN, doi:10.2788/677808.

The model is coupled to the General Estuarine Transport Model (GETM). It is forced with fluxes, obtained from realistic meteorological condi­tions and tuned for the Black Sea ecosystem in particular. The main advantage of the GETM-BSEM model set-up for the Black Sea is the possibility to study: (i) the long-term evolution of the Black Sea ecosystem; (ii) the effect of nutrient load and regional weather on the biogeochemical structure.

Data sets consists of monthly mean values of total phytoplankton (large + small) and nitrate concentrations on a horizontal grid of 423x172 data points (2 longitude minutes x 2 latitude minutes) and 70 vertical levels. Simulations are performed for the period from 1960 to 2014 (55 years). The 3D monthly mean vertical coordinate (m), phytoplankton (mmol N/m**3) and nitrate (mmol N/m**3) are stored in NetCDF format.
DOI: 10.1285/i20398573v1n1p64
title: Index
DOI: 10.5281/zenodo.579835
title: Perceptual Task Induces Saccadic Adaptation By Target Selection

description: Dataset from the following publication:

Schütz, A. C. & Souto, D. (2015). Perceptual task induces saccadic adaptation by target selection. <em>Front. Hum. Neurosci., 9</em>(566), 1-14. doi:10.3389/fnhum.2015.00566
DOI: 10.21227/h2tp46
title: Source Separation for Simultaneous Seismic Data Acquisition
DOI: 10.5281/zenodo.604646
title: Perceptual Task Induces Saccadic Adaptation By Target Selection

description: Dataset from the following publication:

Schütz, A. C. & Souto, D. (2015). Perceptual task induces saccadic adaptation by target selection. <em>Front. Hum. Neurosci., 9</em>(566), 1-14. doi:10.3389/fnhum.2015.00566
DOI: 10.1285/i20398573v1n1p65
title: Editorial
DOI: 10.5281/zenodo.579842
title: Saccadic Adaptation Induced By A Perceptual Task

description: Dataset from the following publication:

Schütz, A. C., Kerzel, D., & Souto, D. (2014). Saccadic adaptation induced by a perceptual task. <em>Journal of Vision, 14</em>(5):4, 1–19. doi:10.1167/14.5.4 .
DOI: 10.5281/zenodo.600661
title: Saccadic Adaptation Induced By A Perceptual Task

description: Dataset from the following publication:

Schütz, A. C., Kerzel, D., & Souto, D. (2014). Saccadic adaptation induced by a perceptual task. <em>Journal of Vision, 14</em>(5):4, 1–19. doi:10.1167/14.5.4 .
DOI: 10.5281/zenodo.807672
title: Categorical Facilitation With Equally Discriminable Colors

description: This data supplements the study of:

Witzel, C., & Gegenfurtner, K. R. (2015). Categorical facilitation with equally discriminable colors. Journal of Vision, 15(8), 22. doi:10.1167/15.8.22, http://jov.arvojournals.org/article.aspx?articleid=2381517

The Excell-file provides the data shown in Figure 4 of the above article, which shows the main results. The first sheet (trained) provides the data for the first, experienced group of participants, the second sheet (naive) the data for the naive, untrained group of participants.

Rows refer to the 20 stimulus pairs.

Columns:

sti_ctg = category membership of each colour in a pair.

sti_type = type of colour pair: 1 = centre pair, 2 = boundary, 3 & 4 = transitional pairs

sti_azi = Hue (azimuth) in DKL-space

rt = response times, one column for each observer

er = error rates, one column for each observer
description: This research was supported by the German Science Foundation (DFG) Reinhart-Koselleck program Ge 879/9, Graduiertenkolleg GRK 885 ''NeuroAct'', andSFB TRR 135, as well as by a Gießen University dissertation fellowship and a German Academic Exchange Service (DAAD) postdoctoral fellowship to C. W.
DOI: 10.5281/zenodo.807673
title: Categorical Facilitation With Equally Discriminable Colors

description: This data supplements the study of:

Witzel, C., & Gegenfurtner, K. R. (2015). Categorical facilitation with equally discriminable colors. Journal of Vision, 15(8), 22. doi:10.1167/15.8.22, http://jov.arvojournals.org/article.aspx?articleid=2381517

The Excell-file provides the data shown in Figure 4 of the above article, which shows the main results. The first sheet (trained) provides the data for the first, experienced group of participants, the second sheet (naive) the data for the naive, untrained group of participants.

Rows refer to the 20 stimulus pairs.

Columns:

sti_ctg = category membership of each colour in a pair.

sti_type = type of colour pair: 1 = centre pair, 2 = boundary, 3 & 4 = transitional pairs

sti_azi = Hue (azimuth) in DKL-space

rt = response times, one column for each observer

er = error rates, one column for each observer
description: This research was supported by the German Science Foundation (DFG) Reinhart-Koselleck program Ge 879/9, Graduiertenkolleg GRK 885 ''NeuroAct'', andSFB TRR 135, as well as by a Gießen University dissertation fellowship and a German Academic Exchange Service (DAAD) postdoctoral fellowship to C. W.
DOI: 10.5281/zenodo.803287
title: Fully-Coupled Pressure-Based Finite-Volume Framework For The Simulation Of Fluid Flows At All Speeds In Complex Geometries (Supporting Data)

description: This data accompanies the paper "Fully-coupled pressure-based finite-volume framework for the simulation of fluid flows at all speeds in complex geometries", published in Journal of Computational Physics (2017), http://dx.doi.org/10.1016/j.jcp.2017.06.009.
DOI: 10.1285/i20398573v1n1p69
title: "Political Opposition": Towards a Renewed Research Agenda

description: Despite the centrality of political opposition in democracy, limited theoretical research has been conducted on this issue since the 1970s. However, the previous context of conceptualizing has dramatically changed. This article offers a new perspective on political opposition in contemporary democracies. After a critical review of the classic and contemporary literature on the subject, it proposes a renewed definition of opposition that better grasps the complexity of political opposition in democracies. In addition, the article proposes setting a new agenda for future research on political opposition.
DOI: 10.5281/zenodo.806207
title: Data And Scripts For 89 Djs At Ultra Music Festival 2015

description: Datasets for "How to think music with Data" - Chapter 7.

Contains:<br>
Raw features: (djset2_mirtoolbox.gz, djset_mirtoolbox.gz)<br>
MATLAB-scripts.<br>
Excel spreadsheet (480DJSubsets.xlsx)<br>
Tableau visualization files (480DJsubsetsIntervals.twb, 480DJsubsets.twb)
DOI: 10.5281/zenodo.806206
title: Data And Scripts For 89 Djs At Ultra Music Festival 2015

description: Datasets for "How to think music with Data" - Chapter 7.

Contains:<br>
Raw features: (djset2_mirtoolbox.gz, djset_mirtoolbox.gz)<br>
MATLAB-scripts.<br>
Excel spreadsheet (480DJSubsets.xlsx)<br>
Tableau visualization files (480DJsubsetsIntervals.twb, 480DJsubsets.twb)
DOI: 10.5281/zenodo.807760
title: Meta Data Of 'Weather_Analytics' Data Model

description: description of the data fields of the data model, used in the weather_analytics application
DOI: 10.5281/zenodo.807761
title: Meta Data Of 'Weather_Analytics' Data Model

description: description of the data fields of the data model, used in the weather_analytics application
DOI: 10.5281/zenodo.807129
title: Dataset: How Accountability Is Understood And Realized

description: The raw data and work database of our mapping study. The data can also be viewed here:

https://acc.in.tum.de/accountability_2016/
DOI: 10.7912/d23010
title: Indiana Health Professions Dataset: Supply Distribution and Characteristics
DOI: 10.7912/d2tg67
title: Indiana Health Professions Dataset: Federal Workforce Shortage Designation
DOI: 10.7912/d2z59h
title: Indiana Health Professions Dataset: Mental and Behavioral Health
DOI: 10.5281/zenodo.807128
title: Dataset: How Accountability Is Understood And Realized

description: The raw data and work database of our mapping study. The data can also be viewed here:

https://acc.in.tum.de/accountability_2016/
DOI: 10.5281/zenodo.807544
title: Phasta-Chef One And Four Process In-Memory Dambreak Test Files

description: 3D dambreak phasta-chef test case files for one and four processes.

Contents:<br>
geom.smd               - Simmetrix GeomSim model with problem definition attributes<br>
mdsMesh_bz2         - 4 process mesh with 87K tets<br>
4-procs_case           - 4 process phasta case for 87K tet mesh<br>
t7p1                          - serial five million tet mesh at solver step seven<br>
1-procs_case           - serial phasta case for five million tet mesh<br>
samAdaptLoop_t7_p1.inp - phasta-chef input configuration file for serial five million tet case<br>
solver.inp                  - phSolver configuration file<br>
README                 - this file

Notes:<br>
The dambreak case was ran on a 87K tet mesh on four processes with adaptation.<br>
At the seventh solver step the mesh hit about five million elements.  

The pumi 'condense' utility was then ran:

mpirun -np 4 condense condense_t7.inp 4

to reduce the four process time step 7 case down to one process.
DOI: 10.5281/zenodo.807726
title: Pre-Trained Word2Vec Models For ``Easy Over Hard: A Case Study On Deep Learning''

description: Since the whole stack overflow dump is so big, we can't easily handle well. Here, we provide 10 pre trained word2vec models with different seeds.

 

More details about how to use it, please see paper
DOI: 10.5281/zenodo.807727
title: Pre-Trained Word2Vec Models For ``Easy Over Hard: A Case Study On Deep Learning''

description: Since the whole stack overflow dump is so big, we can't easily handle well. Here, we provide 10 pre trained word2vec models with different seeds.

 

More details about how to use it, please see paper
DOI: 10.7912/d2pp49
title: Indiana Health Professions Dataset: Education Pipeline