cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9u8d2z
title: Occurrence Download

description: A dataset containing 2097 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Patrinia heterophylla"
 ]
}

 The dataset includes 2097 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036824-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qr9qma
title: Occurrence Download

description: A dataset containing 7495 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Patrinia villosa"
 ]
}

 The dataset includes 7495 records from 175 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036823-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94c8sp
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia verlotiorum",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036825-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5hwpav
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mimosa tandilensis"
 ]
}

 The dataset includes 48 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036827-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9hvf9
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantago lanceolata",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 77 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036828-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25550/8j-97n2
title: Developing 3D Craniofacial Morphometry Data and Tools to Transform Dysmorphology (FB4)

description: Dysmorphology is the branch of pediatrics and clinical genetics concerned with structural birth defects and delineation of syndromes. More than 1500 syndromes that include orofacial dysmorphia have been described. Today, dysmorphology remains largely descriptive, with diagnoses based on subjective or semi-quantitative clinical impressions of facial and other anatomic features. Over the past decade, dramatic technological advances in imaging, quantification, and analysis of variation in complex three-dimensional (3D) shape have revolutionized the assessment of morphologic variation, permitting robust definition of quantitative morphometric phenotypes that can distinguish patients from controls in a variety of syndromes. The goal of this project is to develop systems that will enable diagnostic application of craniofacial 3D morphometrics in clinical practice. We aim to define specific quantitative measures that characterize the aberrant facial shapes in a large number of human dysmorphic syndromes. Specifically, we aim to build a broad and deep 3D morphometric facial scan “library” of defined craniofacial dysmorphic syndromes, a resource that can be shared with approved investigators for research purposes via the NIDCR FaceBase Hub; to develop 3D geometric morphometric (GM) and dense surface modeling (DSM) analytical tools to systematically analyze and distinguish dysmorphic syndromes from unaffected individuals and from each other; and finally to develop a functional, automated, prototype clinical tool that is capable of simultaneously distinguishing a large number of syndromes, and that thereby can assist real-time diagnosis of syndromes in the clinical setting. We anticipate that 3D photomorphometric “deep-phenotyping”, in conjunction with the rapid advent of exome and genome sequencing in clinical medicine, will transform dysmorphology from a clinical art into a medical science.
DOI: 10.25550/8j-97n6
title: Matrix Based Mineral Enamel-Biomimetics

description: The goal of this project is to provide insight into the structure, dynamic interactions and multifunctionality of the enamel protein ameloblastin (Ambn), and hence to contribute to the fundamental knowledge as relevant to enamel biomineralization. Ambn is multifunctional with critical roles in the regulation of mineral formation, cell differentiation, cell polarization, and cell–matrix adhesion. We recently identified a novel, highly-conserved amphipathic helix (AH) cell binding domain, located within the sequence encoded by exon 5, and adjacent to the C-terminus of the well-established Ambn self-assembly/co-assembly domain. Our preliminary data using two novel CRISPR-Cas9 gene editing mouse models in which different parts of the AH domain are deleted, show that the AH plays essential roles in amelogenesis. Analysis of enamel from homozygous strains with different deletion mutations on AH domain revealed distinct enamel phenotypes that exhibited hypomineralization with different severity. These observations along with recent published reports from our laboratory have led us to hypothesize that Ambn is a matricellular protein, and its complex role in amelogenesis relies on a multitargeting property centered in the region of the sequence encoded by exon 5. Ambn interacts with ameloblast cells via the AH domain and functions to anchor the mineralizing extracellular matrix to enamel-forming cells. To test our hypothesis, we seek to implement a mechanistic approach to interrogate the structure and function of the multitargeting motif in Ambn, including the AH domain. This will be achieved by 1) conducting a detailed investigation of enamel formation in two novel Ambn AH mutant mouse models in vivo (Aim I), 2) examining Ambn-cell interactions in 3-D cell culture (Aim II), and 3) completing an in vitro investigation of interacting domains in the Ambn sequence involved in its self-assembly, amelogenin (Amel), other potential targets, and cell membrane interactions (Aim III). Overall, our studies will advance understanding of the molecular function of Ambn in enamel biomineralization and of inherited enamel disease, elucidate genetic factors leading to caries susceptibility, and contribute to our efforts to regenerate dental hard tissues.
DOI: 10.25550/8j-97ne
title: Twist1 is crucial in patterning the cranial neural crest cells during frontonasal development

description: Mutations in TWIST1 are associated with Saethre-Chotzen and Sweeny-Cox syndromes with a range of craniofacial anomalies. In mouse, haploinsufficiency of Twist1 caused mild skull defects whereas Twist1 null embryos died during midgestation due to failure of neural tube closure and aberrant apoptosis of cranial neural crest cells (CNCCs). Tissue-specific inactivation of Twist1 in premigratory CNCCs disrupted epithelial-mesenchymal transition during CNCC delamination. Migrating CNCCs in the Twist1flox/flox; Wnt1-Cre embryos exhibited persistent expression of neuroectodermal markers and neural crest marker Sox10. Additionally, these mutants exhibit failure of activation of ectomesenchyme genes including Alx3 and Alx4. In this study, we aimed to show that Twist1 function is required in postmigratory CNCCs for their survival and ectomesenchymal differentiation. And to understand the role of Twist1 in postmigratory CNCCs patterning during frontonasal development we performed cell sorting from the frontonasal tissues at E9.25 and Bulk RNAseq revealed significant overexpression of the branchial arch marker genes in the frontonasal process of the Twist1 conditional mutant mice embryos.
DOI: 10.25550/8j-9hh2
title: The ALX transcription factors determine frontonasal identity of the neural crest-derived craniofacial mesenchyme

description: Biallelic disruptions of any of the three Aristaless-like homeobox (ALX) genes, ALX1, ALX3, and ALX4, cause frontonasal dysplasia, a class of congenital craniofacial disorders characterized by hypertelorism and median facial clefting. Studies in mice showed that Alx1, Alx3, and Alx4 exhibit partially overlapping patterns of expression during craniofacial development. Whereas Alx3 mutant mice do not have obvious craniofacial defects and Alx4 mutant mice exhibit parietal foramina, Alx1 mutant mice show frontonasal defects including short snout, flat nasal bridge, upper lip notching, and hypoplastic premaxilla, and die soon after birth. The Alx3/Alx4 and Alx1/Alx4 compound mutant mice show severe nasal clefting and neonatal lethality. In this study, we show that Alx1/Alx3 compound mutant mice have severe nasal clefting with missing upper and lower incisors. We show that Alx1/Alx3 mutants exhibit disruption of frontonasal mesenchyme identity with ectopic expression of jaw mesenchyme markers Dlx1, Dlx2, Lhx6, and Lhx8 during embryonic development. Furthermore, transgenic overexpression of Alx1 in the post migratory cranial neural crest cells (CNCC) resulted in duplication of the premaxilla accompanied by ectopic expression of Alx4, Pax7, and Shh genes and reduction in expression of Dlx1, Dlx2, Dlx3, and Dlx5 genes in the developing maxillary/mandibular mesenchyme. Together these data indicate that ALX family transcription factors are necessary and sufficient to determine the frontonasal identity of the neural crest-derived craniofacial mesenchyme.
DOI: 10.15468/dl.p3adce
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Convolvulus arvensis",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 162 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036831-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njngh3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Cuculus canorus)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036829-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jqy5qs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Convolvulus arvensis",
 "Country is Kenya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036832-250717081556266/datasets/export for details.
DOI: 10.15468/dl.g8btdf
title: Occurrence Download

description: A dataset containing 213052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Sanicula europaea"
 ]
}

 The dataset includes 213052 records from 1021 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036733-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5mr2g
title: Occurrence Download

description: A dataset containing 109382 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orchis militaris"
 ]
}

 The dataset includes 109382 records from 721 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036722-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/wr7-vn2-9ms
title: Carex pendula Huds.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.xhztjv
title: Occurrence Download

description: A dataset containing 26840 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, India, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Carnivora"
 ]
}

 The dataset includes 26840 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0113056-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/9ge-10s-0dz
title: Carex pendula Huds.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/q92-hdw-8e1
title: Brachypodium sylvaticum subsp. sylvaticum

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/v92-qgq-5tm
title: Brachypodium sylvaticum subsp. sylvaticum

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/5wj-q5j-mwb
title: Brachypodium sylvaticum subsp. sylvaticum

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/yje-gvr-dbj
title: Carex pendula Huds.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/648-96d-zjt
title: Carex pendula Huds.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/mkg-x2v-txq
title: Brachypodium sylvaticum subsp. sylvaticum

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/cs8-pcw-15m
title: Brachypodium sylvaticum subsp. sylvaticum

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/w29-4m9-jww
title: Carex pendula Huds.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/09w-9de-wqn
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/527-755-tlt
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/kmp-nkq-5vz
title: Catapodium rigidum (L.) C.E.Hubb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/7dc-1n1-jr2
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/hrx-ydz-ems
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/41x-j3t-nqv
title: Brachypodium sylvaticum subsp. sylvaticum

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/jy1-3aw-pr7
title: Catapodium rigidum (L.) C.E.Hubb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/wwv-zna-96d
title: Catapodium rigidum (L.) C.E.Hubb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/yyy-xmm-hz9
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/rmf-4zy-lec
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/t8m-wvp-vql
title: Catapodium rigidum (L.) C.E.Hubb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ltp-c73-t26
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ytw-byt-zq2
title: Brachypodium sylvaticum subsp. sylvaticum

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/1a4-nex-kcj
title: Brachypodium sylvaticum subsp. sylvaticum

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/x50-z55-1nh
title: Catapodium rigidum (L.) C.E.Hubb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/232-27c-l8k
title: Campanula spatulata subsp. spatulata

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/vg9-mr0-9z6
title: Campanula spatulata subsp. spatulata

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/c9r-avd-0x4
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/j8h-3lk-2dk
title: Campanula spatulata subsp. spatulata

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/sda-psj-fge
title: Brachypodium distachyon (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/bnh-70a-ca1
title: Campanula spatulata subsp. spatulata

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/z4r-x6s-ddz
title: Brachypodium distachyon (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/3gj-z9e-54v
title: Campanula spatulata subsp. spatulata

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/jsn-hvn-acq
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/qqz-x6k-59p
title: Campanula stenosiphon Boiss. & Heldr.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/l35-m3x-0ze
title: Catapodium rigidum (L.) C.E.Hubb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/k6b-20r-g0s
title: Campanula stenosiphon Boiss. & Heldr.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ysc-5jl-eq0
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5281/zenodo.15852097
title: TraceLinking Implementations with their Verified Designs (Evaluation)

description: This artifact combines the dataset from evaluating TraceLink, as well as scripts for processing that data. The packaged data is reported and discussed in our publication "TraceLinking Implementations with their Verified Designs", presented at OOPSLA 2025.

WARNING: this artifact will consume up to 400GB of disk space.

The scripts in this artifact reproduce part of Table 1, all of Table 3, and all of Table 4 in the paper. Table 2 is a qualitative summary. All other data presented was manually collected, and the two `.ods` files contain all recorded working for summary values we present.

Note that this artifact includes a compiled `.jar` of for commit `c376f7c4ea3e1537bdb4e2c6584dfbf614a54e52` of the PGo compiler (with TraceLink features). The full source code, including of that specific commit, is available at https://github.com/distCompiler/pgo.

See the included README.md for details.
DOI: 10.3535/mxz-b5y-342
title: Campanula stenosiphon Boiss. & Heldr.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/d5c-9np-zh0
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/d5s-sk1-h94
title: Campanula stenosiphon Boiss. & Heldr.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/bcb-t15-m08
title: Brachypodium pinnatum (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/f5b-bc7-7d2
title: Catapodium rigidum (L.) C.E.Hubb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.60712/si-id314309.1
title: StrainInfo SI-ID 314309.1

description: StrainInfo dataset 314309 about a strain of Mucor strictus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id314310.1
title: StrainInfo SI-ID 314310.1

description: StrainInfo dataset 314310 about a strain of Mucor subtilissimus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id314154.1
title: StrainInfo SI-ID 314154.1

description: StrainInfo dataset 314154 about a strain of Cunninghamella echinulata var. echinulata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.cm6hqj
title: Occurrence Download

description: A dataset containing 268408 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Centaurea jacea L."
 ]
}

 The dataset includes 268408 records from 412 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062550-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id314155.1
title: StrainInfo SI-ID 314155.1

description: StrainInfo dataset 314155 about a strain of Cunninghamella echinulata var. echinulata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.