cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14583758
title: Additional file 10 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 10. GO datasets. S1 Exclusive GO terms for proteins derived from B-DE-miRNA targets and B genes. S2 Common GO terms among B-related proteins and other proteins. S3 GO terms for all A. latifasciata targets in the PPI network.
DOI: 10.6084/m9.figshare.14583758.v1
title: Additional file 10 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 10. GO datasets. S1 Exclusive GO terms for proteins derived from B-DE-miRNA targets and B genes. S2 Common GO terms among B-related proteins and other proteins. S3 GO terms for all A. latifasciata targets in the PPI network.
DOI: 10.6084/m9.figshare.14583764.v1
title: Additional file 1 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 1. miRDeep2 – Astatotilapia latifasciata miRNA prediction.
DOI: 10.6084/m9.figshare.14583767
title: Additional file 2 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 2. Html file of miRNA prediction. miRDeep2 – miRNA prediction in the B+ assembly using B− RNAseq which did not align in the A. latifasciata genome.
DOI: 10.6084/m9.figshare.14583764
title: Additional file 1 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 1. miRDeep2 – Astatotilapia latifasciata miRNA prediction.
DOI: 10.6084/m9.figshare.14583770.v1
title: Additional file 3 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 3. Html file of miRNA prediction. miRDeep2 – miRNA prediction in the B+ assembly using B+ RNAseq which did not align in the A. latifasciata genome.
DOI: 10.6084/m9.figshare.14583770
title: Additional file 3 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 3. Html file of miRNA prediction. miRDeep2 – miRNA prediction in the B+ assembly using B+ RNAseq which did not align in the A. latifasciata genome.
DOI: 10.6084/m9.figshare.14583767.v1
title: Additional file 2 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 2. Html file of miRNA prediction. miRDeep2 – miRNA prediction in the B+ assembly using B− RNAseq which did not align in the A. latifasciata genome.
DOI: 10.6084/m9.figshare.14583779
title: Additional file 6 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 6. Html files containing miRNA prediction in B-blocks, separated by RNA-seq sample. S1 miRDeep2 – miRNA prediction in B-blocks using brain female B− RNA-seq. S2 miRDeep2 – miRNA prediction in B-blocks using brain female B+ RNA-seq. S3 miRDeep2 – miRNA prediction in B-blocks using brain male B− RNA-seq. S4 miRDeep2 – miRNA prediction in B-blocks using brain male B+ RNA-seq. S5 miRDeep2 – miRNA prediction in B-blocks using gonads female B− RNA-seq. S6 miRDeep2 – miRNA prediction in B-blocks using gonads female B+ RNA-seq. S7 miRDeep2 – miRNA prediction in B-blocks using gonads male B− RNA-seq. S8 miRDeep2 – miRNA prediction in B-blocks using gonads male RNA-seq. S9 miRDeep2 – miRNA prediction in B-blocks using muscle female B− RNA-seq. S10 miRDeep2 – miRNA prediction in B-blocks using muscle female B+ RNA-seq. S11 miRDeep2 – miRNA prediction in B-blocks using muscle male B− RNA-seq. S12 miRDeep2 – miRNA prediction in B-blocks using muscle male B+ RNA-seq.
DOI: 10.6084/m9.figshare.14583779.v1
title: Additional file 6 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 6. Html files containing miRNA prediction in B-blocks, separated by RNA-seq sample. S1 miRDeep2 – miRNA prediction in B-blocks using brain female B− RNA-seq. S2 miRDeep2 – miRNA prediction in B-blocks using brain female B+ RNA-seq. S3 miRDeep2 – miRNA prediction in B-blocks using brain male B− RNA-seq. S4 miRDeep2 – miRNA prediction in B-blocks using brain male B+ RNA-seq. S5 miRDeep2 – miRNA prediction in B-blocks using gonads female B− RNA-seq. S6 miRDeep2 – miRNA prediction in B-blocks using gonads female B+ RNA-seq. S7 miRDeep2 – miRNA prediction in B-blocks using gonads male B− RNA-seq. S8 miRDeep2 – miRNA prediction in B-blocks using gonads male RNA-seq. S9 miRDeep2 – miRNA prediction in B-blocks using muscle female B− RNA-seq. S10 miRDeep2 – miRNA prediction in B-blocks using muscle female B+ RNA-seq. S11 miRDeep2 – miRNA prediction in B-blocks using muscle male B− RNA-seq. S12 miRDeep2 – miRNA prediction in B-blocks using muscle male B+ RNA-seq.
DOI: 10.6084/m9.figshare.14583782.v1
title: Additional file 7 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 7. Multiple data sheets of samples separated by tissue and sex describing the B-DE-miRNA and its target.
DOI: 10.6084/m9.figshare.14583785
title: Additional file 8 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 8. Multiple data sheets of samples separated by tissue and sex describing the B-DE miRNA target gene and protein names – recovered from A. latifasciata transcriptome annotation [58].
DOI: 10.6084/m9.figshare.14583782
title: Additional file 7 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 7. Multiple data sheets of samples separated by tissue and sex describing the B-DE-miRNA and its target.
DOI: 10.6084/m9.figshare.14583788
title: Additional file 9 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 9. Folder containing the .tsv files of networks. S1.tsv PPI network filtered from the Biogrid database. S2.tsv PPI of all proteins from A. latifasciata miRNA targets. S3.tsv B-related proteins and B genes subnetwork. S4.tsv B-miR-net.
DOI: 10.6084/m9.figshare.14583788.v1
title: Additional file 9 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 9. Folder containing the .tsv files of networks. S1.tsv PPI network filtered from the Biogrid database. S2.tsv PPI of all proteins from A. latifasciata miRNA targets. S3.tsv B-related proteins and B genes subnetwork. S4.tsv B-miR-net.
DOI: 10.6084/m9.figshare.14583785.v1
title: Additional file 8 of Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

description: Additional file 8. Multiple data sheets of samples separated by tissue and sex describing the B-DE miRNA target gene and protein names – recovered from A. latifasciata transcriptome annotation [58].
DOI: 10.6084/m9.figshare.14583806
title: Additional file 3 of How combining different caries lesions characteristics may be helpful in short-term caries progression prediction: model development on occlusal surfaces of primary teeth

description: Additional file 3: Regression coefficients (95% of bias-corrected and accelerated confidence interval) for predictors in univariate models performed with bootstrapped sample.
DOI: 10.6084/m9.figshare.14583806.v1
title: Additional file 3 of How combining different caries lesions characteristics may be helpful in short-term caries progression prediction: model development on occlusal surfaces of primary teeth

description: Additional file 3: Regression coefficients (95% of bias-corrected and accelerated confidence interval) for predictors in univariate models performed with bootstrapped sample.
DOI: 10.6084/m9.figshare.14583796
title: Additional file 1 of The degree of astrocyte activation is predictive of the incubation time to prion disease

description: Additional file 1. Table S1: Composition of nCounter Astrocyte panel. Gray font color and asterisks indicate probes producing low counts.
DOI: 10.6084/m9.figshare.14583796.v1
title: Additional file 1 of The degree of astrocyte activation is predictive of the incubation time to prion disease

description: Additional file 1. Table S1: Composition of nCounter Astrocyte panel. Gray font color and asterisks indicate probes producing low counts.
DOI: 10.6084/m9.figshare.14583802
title: Additional file 3 of The degree of astrocyte activation is predictive of the incubation time to prion disease

description: Additional file 3. Table S3: Normalized counts for all individual animals listed in Table S2, reported for four brain regions.
DOI: 10.6084/m9.figshare.14583802.v1
title: Additional file 3 of The degree of astrocyte activation is predictive of the incubation time to prion disease

description: Additional file 3. Table S3: Normalized counts for all individual animals listed in Table S2, reported for four brain regions.
DOI: 10.6084/m9.figshare.14583805
title: Additional file 4 of The degree of astrocyte activation is predictive of the incubation time to prion disease

description: Additional file 4. Table S4 Linear fold change for each gene, reported as a ratio between each sample group and normal i.p. female (F) as a control group. The table includes data for four brain regions, presented as full lists of genes and as lists of changed genes (p &lt; 0.05, fold change ≥-/+1.2).
DOI: 10.6084/m9.figshare.14583805.v1
title: Additional file 4 of The degree of astrocyte activation is predictive of the incubation time to prion disease

description: Additional file 4. Table S4 Linear fold change for each gene, reported as a ratio between each sample group and normal i.p. female (F) as a control group. The table includes data for four brain regions, presented as full lists of genes and as lists of changed genes (p &lt; 0.05, fold change ≥-/+1.2).
DOI: 10.6084/m9.figshare.14583808
title: Additional file 5 of The degree of astrocyte activation is predictive of the incubation time to prion disease

description: Additional file 5. Table S5: List of gene sets in Astrocyte panel. Correlations (R2, p-value) between individual gene sets and incubation time to terminal disease calculated separately for four brain regions for i.c. and i.p. groups.
DOI: 10.6084/m9.figshare.14583808.v1
title: Additional file 5 of The degree of astrocyte activation is predictive of the incubation time to prion disease

description: Additional file 5. Table S5: List of gene sets in Astrocyte panel. Correlations (R2, p-value) between individual gene sets and incubation time to terminal disease calculated separately for four brain regions for i.c. and i.p. groups.
DOI: 10.6084/m9.figshare.14583814
title: Additional file 6 of The degree of astrocyte activation is predictive of the incubation time to prion disease

description: Additional file 6. Table S6: Top 40 DEGs in pathways that report on astrocyte function. Fold change along with p-values of the top 40 DEGs expressed in thalamus of all animal groups.
DOI: 10.6084/m9.figshare.14583814.v1
title: Additional file 6 of The degree of astrocyte activation is predictive of the incubation time to prion disease

description: Additional file 6. Table S6: Top 40 DEGs in pathways that report on astrocyte function. Fold change along with p-values of the top 40 DEGs expressed in thalamus of all animal groups.
DOI: 10.6084/m9.figshare.14583853
title: Additional file 1 of How imputation can mitigate SNP ascertainment Bias

description: Additional file 1: Supplementary File 1. Accession Information of raw data per sample.
DOI: 10.6084/m9.figshare.14583853.v1
title: Additional file 1 of How imputation can mitigate SNP ascertainment Bias

description: Additional file 1: Supplementary File 1. Accession Information of raw data per sample.
DOI: 10.6084/m9.figshare.14583934
title: Additional file 1 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 1.
DOI: 10.6084/m9.figshare.14583934.v1
title: Additional file 1 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 1.
DOI: 10.6084/m9.figshare.14583940
title: Additional file 3 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 3.
DOI: 10.6084/m9.figshare.14583940.v1
title: Additional file 3 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 3.
DOI: 10.6084/m9.figshare.14583943
title: Additional file 4 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 4.
DOI: 10.6084/m9.figshare.14583943.v1
title: Additional file 4 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 4.
DOI: 10.6084/m9.figshare.14583946
title: Additional file 5 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 5.
DOI: 10.6084/m9.figshare.14583949
title: Additional file 6 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 6.
DOI: 10.6084/m9.figshare.14583952
title: Additional file 7 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 7.
DOI: 10.6084/m9.figshare.14583937.v1
title: Additional file 2 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 2.
DOI: 10.6084/m9.figshare.14583949.v1
title: Additional file 6 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 6.
DOI: 10.6084/m9.figshare.14583952.v1
title: Additional file 7 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 7.
DOI: 10.6084/m9.figshare.14583937
title: Additional file 2 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 2.
DOI: 10.6084/m9.figshare.14583955.v1
title: Additional file 8 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 8.
DOI: 10.6084/m9.figshare.14583955
title: Additional file 8 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 8.
DOI: 10.6084/m9.figshare.14583958
title: Additional file 9 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 9.
DOI: 10.6084/m9.figshare.14583958.v1
title: Additional file 9 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 9.
DOI: 10.6084/m9.figshare.14583946.v1
title: Additional file 5 of A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

description: Additional file 5.
DOI: 10.6084/m9.figshare.14583961.v1
title: Additional file 1 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 1: Supplementary Table 1: Differentially expressed probes (FDR 0.4) after Echinaforce® tincture treatment.
DOI: 10.6084/m9.figshare.14583964
title: Additional file 2 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 2: Supplementary Table 2: Enriched Ingenuity canonical pathways of differentially expressed genes after Echinaforce® tincture treatment.
DOI: 10.6084/m9.figshare.14583964.v1
title: Additional file 2 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 2: Supplementary Table 2: Enriched Ingenuity canonical pathways of differentially expressed genes after Echinaforce® tincture treatment.
DOI: 10.6084/m9.figshare.14583967
title: Additional file 3 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 3: Supplementary Table 3: Ingenuity pathway enrichment analysis of diseases and biological functions of differentially expressed genes after Echinaforce® tincture treatment.
DOI: 10.6084/m9.figshare.14583961
title: Additional file 1 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 1: Supplementary Table 1: Differentially expressed probes (FDR 0.4) after Echinaforce® tincture treatment.
DOI: 10.6084/m9.figshare.14583973
title: Additional file 5 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 5: Supplementary Table 5: PamGene upstream kinase analysis.
DOI: 10.6084/m9.figshare.14583973.v1
title: Additional file 5 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 5: Supplementary Table 5: PamGene upstream kinase analysis.
DOI: 10.6084/m9.figshare.14583976
title: Additional file 6 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 6: Supplementary Table 6: Differentially methylated positions (FDR 0.05).
DOI: 10.6084/m9.figshare.14583970
title: Additional file 4 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 4: Supplementary Table 4: STRING protein-protein-interaction plot and Metascape protein-protein-interaction MCODE network enrichment analysis of differentially expressed genes after Echinaforce® tincture treatment.
DOI: 10.6084/m9.figshare.14583976.v1
title: Additional file 6 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 6: Supplementary Table 6: Differentially methylated positions (FDR 0.05).
DOI: 10.6084/m9.figshare.14583982.v1
title: Additional file 7 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 7: Supplementary Table 7: Enriched Ingenuity canonical pathways of differentially methylated genes after Echinaforce® tincture treatment.
DOI: 10.6084/m9.figshare.14583970.v1
title: Additional file 4 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 4: Supplementary Table 4: STRING protein-protein-interaction plot and Metascape protein-protein-interaction MCODE network enrichment analysis of differentially expressed genes after Echinaforce® tincture treatment.
DOI: 10.6084/m9.figshare.14583982
title: Additional file 7 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 7: Supplementary Table 7: Enriched Ingenuity canonical pathways of differentially methylated genes after Echinaforce® tincture treatment.
DOI: 10.6084/m9.figshare.14583967.v1
title: Additional file 3 of Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences

description: Additional file 3: Supplementary Table 3: Ingenuity pathway enrichment analysis of diseases and biological functions of differentially expressed genes after Echinaforce® tincture treatment.
DOI: 10.6084/m9.figshare.14583977.v1
title: Additional file 5 of Low expression of CHRDL1 and SPARCL1 predicts poor prognosis of lung adenocarcinoma based on comprehensive analysis and immunohistochemical validation

description: Additional file 5: Table S3. The differentially expressed genes (DEGs) in GSE75037.
DOI: 10.6084/m9.figshare.14583983
title: Additional file 7 of Low expression of CHRDL1 and SPARCL1 predicts poor prognosis of lung adenocarcinoma based on comprehensive analysis and immunohistochemical validation

description: Additional file 7: Table S5. The co-expression genes in the blue module of GSE75037.
DOI: 10.6084/m9.figshare.14583983.v1
title: Additional file 7 of Low expression of CHRDL1 and SPARCL1 predicts poor prognosis of lung adenocarcinoma based on comprehensive analysis and immunohistochemical validation

description: Additional file 7: Table S5. The co-expression genes in the blue module of GSE75037.
DOI: 10.6084/m9.figshare.14583986
title: Additional file 8 of Low expression of CHRDL1 and SPARCL1 predicts poor prognosis of lung adenocarcinoma based on comprehensive analysis and immunohistochemical validation

description: Additional file 8: Table S6. The co-expression genes in the blue module of TCGA-LUAD dataset.