cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/946jp74nnx.1
title: Is there a breakdown of the short-run Phillips curve in an inflation targeting regime in India: A State-level panel data estimation using the household survey data

description: Panel data at state-level for inflation and unemployment rate in India.
DOI: 10.17632/2gr4k3kf42.1
title: RTIs resulting early death at the emergency room in Khon Kaen hospital in COVID-19 pandemic

description: RTIs resulting early death at the emergency room in Khon Kaen hospital in COVID-19 pandemic: a descriptive study
DOI: 10.17632/kt44d52x3j.1
title: MCTD-Asthma

description: MCTD and asthma- a Mendelian randomization Study
DOI: 10.17632/5cw5rghg7m.1
title: Microbiome-driven IBS metabotypes influence response to the low FODMAP diet: Insights from the faecal volatome

description: WORKING GROUP
Thomas Edward Conley 1,2, Rachael Slater 1, Stephen Moss 3,4, David Bulmer 5, Juan de la Revilla Negro 3, Umer Zeeshan Ijaz 6, David Mark Pritchard 1,2, Miles Parkes 3,4, Chris Probert 1,2

1. University of Liverpool Institute of Systems, Molecular and Integrative Biology, Liverpool, UK
2. Liverpool University Hospitals NHS Foundation Trust, Liverpool, UK
3. Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK
4. University of Cambridge Department of Medicine, Gastroenterology and Hepatology, Cambridge, Cambridgeshire, UK
5. University of Cambridge Department of Pharmacology, Cambridge, Cambridgeshire, UK
6. University of Glasgow, Mazumdar-Shaw Advanced Research Centre, Glasgow, UK


ABSTRACT:
BACKGROUND Irritable bowel syndrome (IBS) is a common and debilitating disorder manifesting with abdominal pain and bowel dysfunction. A mainstay of treatment is dietary modification, including restriction of FODMAPs (fermentable oligosaccharides, disaccharides, monosaccharides and polyols). A greater response to a low FODMAP diet has been reported in those with a distinct IBS microbiome termed IBS-P. We investigated whether this is linked to specific changes in the metabolome in IBS-P. 
METHODS Solid phase microextraction gas chromatography-mass spectrometry was used to examine the faecal headspace of 56 IBS cases (each paired with a non-IBS household control) at baseline, and after four-weeks of a low FODMAP diet (39 pairs). 50% cases had the IBS-P microbial subtype, while the others had a microbiome that more resembled healthy controls (termed IBS-H). Clinical response to restriction of FODMAPs was measured with the IBS-symptom severity scale, from which a pain sub score was calculated. 
FINDINGS Two distinct metabotypes were identified and mapped onto the microbial subtypes. IBS-P was characterised by a fermentative metabolic profile rich in short chain fatty acids (SCFAs). After FODMAP restriction significant reductions in SCFAs were observed in IBS-P. SCFA levels did not change significantly in the IBS-H group. The magnitude of pain and overall symptom improvement were significantly greater in IBS-P compared to IBS-H (p=0.016 and p=0.026, respectively). Using just five metabolites, a biomarker model could predict microbial subtype with accuracy (AUROC 0.797, sensitivity 78.6% (95% CI:0.78–0.94), specificity 71.4% (95% CI:0.55–0.88).
INTERPREATATION A metabotype high in SCFAs can be manipulated by restricting fermentable carbohydrate, and is associated with an enhanced clinical response to this dietary restriction. This implies that SCFAs harbour pro-nociceptive potential when produced in a specific IBS niche. By ascertaining metabotype, microbial subtype can be predicted with accuracy. This could allow targeted FODMAP restriction in those seemingly primed to respond best.

Enclosed:
1. Master table containing clinical & faecal SPME-GC-MS data.
2. File containing correlation coefficients between VOCs & bacterial pathways.
DOI: 10.15468/dl.y4gg3w
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron williamsianum Rehder & E.H.Wilson"
 ]
}

 The dataset includes 216 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033128-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/6tfjpcrvdc.1
title: IL-9 mitigates inflammatory bone loss via modulating the “Gut-Immune-Bone” axis

description: Data
DOI: 10.17632/m8y3kd7gf8.1
title: Data related to Piloting a Biology Virtual Science Lab (VSL) by Lower Secondary School Teachers in Rwanda

description: The dataset presented here was collected from biology teachers in Rwandan lower secondary schools who piloted a newly developed Virtual Science Laboratory (VSL) entitled Monohybridism with Complete Dominance Inheritance from April 23, 2024, to May 3, 2024. This VSL was developed by the Rwanda Quality Basic Education for Human Capital Development (RQBEHCD), a project financed by the World Bank Group through the Rwandan government.
DOI: 10.17632/nv327cwcgt.1
title: MPO and permeability

description: Here you can find code and data used in the study "A model for melt-preferred orientation and permeabilities in deformed partially molten peridotites" by Boda Liu, Chao Qi, Ross N. Mitchell, Cin-Ty A. Lee, Chuan-Zhou Liu.

The folder "MCMC_code" includes the C++ code for the MCMC implementation. Boost (https://www.boost.org/users/history/version_1_78_0.html) and GSL (https://www.gnu.org/software/gsl/) are required for the current project. Useful installation guides can be found at https://www.boost.org/doc/libs/1_77_0/more/getting_started/windows.html and https://solarianprogrammer.com/2020/01/26/getting-started-gsl-gnu-scientific-library-windows-macos-linux/.
The folder "sample_data" contains microstructure data used by MCMC code. Please don't change anything in this folder.
The folder "MCMC_output" contains output files generated by MCMC code. Please don't change anything in this folder.
The folder "plot_result" contains MATLAB scripts to plot fits to microstructure data.
DOI: 10.15468/dl.zukdf7
title: Occurrence Download

description: A dataset containing 1745 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodomyrtus psidioides (G.Don) Benth."
 ]
}

 The dataset includes 1745 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033129-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/vm963zghnw.1
title: Data set__Antidandruf formulation from Aloe vera_ Ocimum sanctum_ and Withania Somnifera

description: This research data set contains data related to antidandruf shampoo using extracts from the leaves of Aloe Vera, Ocimum Sanctum, and Withania Somnifera herbs as an advancement of Ethiopian local herbs via formulation. The presented data gives information on the optimal formulation process for making the herbal antidandruff shampoo. Ethanol-extracted oil from Aloe Vera, Ocimum Sanctum, and Withania Somnifera leaves was used to create three different formulations: F1, F2, and F3. The formulated antidandruff shampoo was evaluated interms of its solid content, foamability, viscosity, dirt dispersion, pH, wetting time, and organoleptic properties. Additionally, the data set includes information on the antifungal activity performance of the Antidandruf shampoo against Malassezia furfur, as determined by disc diffusion and colony count tests. The active chemical components of the leaf-extracted oil were also measured using FTIR.
DOI: 10.17632/wmdyvcmct3.2
title: R code for Wirobski et al. 2024: Oxytocin and cortisol concentrations in urine and saliva in response to physical exercise in humans

description: R script used for descriptive analyses, modelling, plotting, and correlational analyses of data reported in Wirobski et al., 2024, Oxytocin and cortisol concentrations in urine and saliva in response to physical exercise in humans.
DOI: 10.17632/t8v3mmc5mj.1
title: Experimental dataset on leaf-based extracted dandruff-curing shampoo derived from Aloe vera, Ocimum sanctum, and Withania somnifera herbs: Advancing Ethiopian local herbs through formulation.

description: This research data set contains data related to a shampoo that cures dandruff by using extracts from the leaves of Aloe Vera, Ocimum Sanctum, and Withania Somnifera herbs as an advancement of Ethiopian local herbs via formulation. The presented data gives information on the optimal formulation process for making an herbal antidandruff shampoo. Ethanol-extracted oil from Aloe Vera, Ocimum Sanctum, and Withania Somnifera leaves was used to create three different formulations: F1, F2, and F3. The formulated antidandruff shampoo was evaluated for its solid content, foamability, viscosity, dirt dispersion, pH, wetting time, and organoleptic properties. Additionally, the data set includes information on the antifungal activity of the shampoo against Malassezia furfur, as determined by disc diffusion and colony count tests. The active chemical components of the leaf-extracted oil were also measured using FTIR spectrum.
DOI: 10.17632/t8v3mmc5mj.2
title: Data set__Antidandruf formulation from Aloe vera_ Ocimum sanctum_ and Withania somnifera

description: This research data set contains data related to antidandruf shampoo using extracts from the leaves of Aloe Vera, Ocimum Sanctum, and Withania Somnifera herbs as an advancement of Ethiopian local herbs via formulation. The presented data gives information on the optimal formulation process for making the herbal antidandruff shampoo. Ethanol-extracted oil from Aloe Vera, Ocimum Sanctum, and Withania Somnifera leaves was used to create three different formulations: F1, F2, and F3. The formulated antidandruff shampoo was evaluated interms of its solid content, foamability, viscosity, dirt dispersion, pH, wetting time, and organoleptic properties. Additionally, the data set includes information on the antifungal activity performance of the Antidandruf shampoo against Malassezia furfur, as determined by disc diffusion and colony count tests. The active chemical components of the leaf-extracted oil were also measured using FTIR.
DOI: 10.17632/9vb7skmwjd.1
title: Data Results from Photothermal Therapy Computational Simulations

description: These data pertain to the results presented in the manuscript entitled: "Modeling for realistic prediction in photothermal therapy: validation using data from real interstitial laser therapy for breast cancer." Validation of computed data was achieved by comparison with experimental data from the literature. Computational data results are shared here in a compressed file named DataResults.zip, which includes all computational results (in *.m format) that were analyzed to select the results presented in the manuscript. Additionally, it contains some scripts specifically written to help with plotting.
DOI: 10.15468/dl.qpnc54
title: Occurrence Download

description: A dataset containing 5089 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbario de Plantas Vasculares de la Asociación BIGA para el estudio del patrimonio natural de Galicia: FBIGA"
 ]
}

 The dataset includes 5089 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033130-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/bfn2pksz45.1
title: EEG Motor imagery open/close hands with C4 electrode dataset

description: Dataset with records of imagery open and close right and left and right hands (actually, the fists) in different setups and no movement in other setup. They are saved in matlab format. Someone that wants to use it only has to execute the load command or clicking two times the files after download.

Inside every movement setup there are 4 signals of the same movement.
- setup1: close right hand
- setup2: open right hand
- setup3: close left hand
- setup4: open left hand
Total: 4 signals per movement (setup), total 16 movement signals.

Rest has 10 records.
- setup1_rest: no movement
Total: 10 records, 1 signals per record, 10 no movement signals.

The duration of the signals was 2 seconds per record. They are saved with 
just one electrode in the C4 position with the reference electrode placed 
behind the ear.

The last 6 samples (per record) can be erased.
DOI: 10.5281/zenodo.12797195
title: Object A-4

description: Object A-4. DNA-DNA hybridization (DDH) comparison of Pssc reference strains and phylogroup 2A and 2B cucurbit-associated strains to type strain genomes of P. syringae and P. cerasi. Kiersten Fullem, Dissertation, University of Florida 2024.
DOI: 10.5281/zenodo.12797196
title: Object A-4

description: Object A-4. DNA-DNA hybridization (DDH) comparison of Pssc reference strains and phylogroup 2A and 2B cucurbit-associated strains to type strain genomes of P. syringae and P. cerasi. Kiersten Fullem, Dissertation, University of Florida 2024.
DOI: 10.15468/dl.rfxhmk
title: Occurrence Download

description: A dataset containing 70009 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ricinus communis L."
 ]
}

 The dataset includes 70009 records from 942 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033131-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/rdy3s9vzsb.1
title: An Analysis of the State of Practice of Risk Management in Agile Organizations in Brazil - Supplementary Material

description: The use of agile methods tends to keep risks under control in software projects, due to their inherent characteristics of small increments, work visibility and expectation management. 

Thus, explicit risk management in agile projects has often been neglected, as the use of agile methods, with a focus on rapid value delivery, tends to lead to implicit risk management. However, software projects that use agile methods also can fail and implicit risk management may often not be sufficient for certain contexts. This has sparked research interest in the possible need for explicit risk management in software organizations that use agile methods. 

Motivated by the lack of information about risk management in agile software development contexts, a comprehensive survey is carried out to understand how software development organizations that use agile methods are managing risk. We conducted an online survey with a statistically significant sample of 273 agile professionals in Brazil. 

The main research question of this study is: "how software development organizations in Brazil are managing risks in agile contexts". Along with the main research question, this study aims to discover how explicit risk management practices are applied (or not) and how agile ceremonies and risk management processes are carried out side by side. Thus, we derive 7 specific research questions (RQ) from the main research question:

RQ1. How many companies manage risks and what is their organizational context?
RQ2. Are agile methods sufficient for risk management? 
RQ3. What risk management practices are introduced in agile methods?
RQ4. In which ceremonies are risk management practices introduced?
RQ5. Does the organizational context influence the practices introduced?
RQ6. Does the organizational context influence the ceremonies in which risks are managed?
RQ7. Does the organizational context influence the risk management processes that are used

To answer the research questions, we prepared a questionnaire with 8 closed questions (closed-ended or multiple choice) and 3 open questions (essay) as the data collection instrument, using Google Forms as a tool.

This repository makes available the data collected in this survey. The collected raw data, parsed data, coded data and the data collection form are made available.
DOI: 10.17632/rdy3s9vzsb.2
title: An Analysis of the State of Practice of Risk Management in Agile Organizations in Brazil - Supplementary Material

description: The use of agile methods tends to keep risks under control in software projects, due to their inherent characteristics of small increments, work visibility and expectation management. 

Thus, explicit risk management in agile projects has often been neglected, as the use of agile methods, with a focus on rapid value delivery, tends to lead to implicit risk management. However, software projects that use agile methods also can fail and implicit risk management may often not be sufficient for certain contexts. This has sparked research interest in the possible need for explicit risk management in software organizations that use agile methods. 

Motivated by the lack of information about risk management in agile software development contexts, a comprehensive survey is carried out to understand how software development organizations that use agile methods are managing risk. We conducted an online survey with a statistically significant sample of 273 agile professionals in Brazil. 

The main research question of this study is: "how software development organizations in Brazil are managing risks in agile contexts". Along with the main research question, this study aims to discover how explicit risk management practices are applied (or not) and how agile ceremonies and risk management processes are carried out side by side. Thus, we derive 7 specific research questions (RQ) from the main research question:

RQ1. How many companies manage risks and what is their organizational context?
RQ2. Are agile methods sufficient for risk management? 
RQ3. What risk management practices are introduced in agile methods?
RQ4. In which ceremonies are risk management practices introduced?
RQ5. Does the organizational context influence the practices introduced?
RQ6. Does the organizational context influence the ceremonies in which risks are managed?
RQ7. Does the organizational context influence the risk management processes that are used

To answer the research questions, we prepared a questionnaire with 8 closed questions (closed-ended or multiple choice) and 3 open questions (essay) as the data collection instrument, using Google Forms as a tool.

This repository makes available the data collected in this survey. The collected raw data, parsed data, coded data and the data collection form are made available.

This research project was approved by the Human Research Ethics Committee of the Federal University of Santa Catarina under number 55851622.8.0000.0121.
DOI: 10.17632/5jgbmk6p42.1
title: NR effect on subcortical speech encoding

description: The code and data to reproduce the figures from Kim, Schroeder, and Bharadwaj.
DOI: 10.17632/tvhr5pbmdz.1
title: Solar_mini_grid

description: This dataset is part of a larger research project that the Chalmers University of Technology conducts in east Africa with respect to solar PV powered mini-grids, rural electrification, and its impact on sustainable development goals. The aim of the data collection was thus to gather relevant social, economic, electrification, geographic, demographic and energy use data in order to investigate the impact of solar mini-grids on the economic development, income generation and biomass fuel consumption of rural off-grid households in two remote towns in Ethiopia. Since, the data analysis approach to be used was initially determined to be Propensity Score Method (PSM), the data collection was made in two separate groups: Intervention (mini-grid electrified) groups, and control (non-electrified) groups.
DOI: 10.17632/kkhs9zr69y.3
title: Supplementary Information for Mitchell and Rabinovitch et al., A proposed model for cryovolcanic activity on Enceladus driven by volatile exsolution

description: All scripts and data used in the paper Mitchell and Rabinovitch et al., "A Proposed Cryovolcanic Eruption Model for Enceladus’ Plume" - please see the README file for a more detailed explanation of the repository. Matlab version 2021 or later is required to run these codes.
DOI: 10.17632/kkhs9zr69y.4
title: Supplementary Information for Mitchell and Rabinovitch et al., A proposed model for cryovolcanic activity on Enceladus driven by volatile exsolution

description: All scripts and data used in the paper: 

Mitchell, K. L., Rabinovitch, J., Scamardella, J. C., & Cable, M. L. (2024). A proposed model for cryovolcanic activity on Enceladus driven by volatile exsolution. Journal of Geophysical Research: Planets, 129, e2023JE007977. https://doi.org/10.1029/2023JE007977

Please see the README file for a more detailed explanation of the repository. Matlab version 2021 or later is required to run these codes.
DOI: 10.17632/kpt76sbv53.1
title: Inventory of Tree Species Afram Plains

description: The dataset presents a list of tree species found in the Afram Plains region of Ghana, with both common and scientific names provided. It includes a total of 93 tree species, with some species having multiple common names listed. The list is organized into two main categories: charcoal species and non-charcoal species.

For each tree species, the common name(s) are listed, followed by the corresponding scientific name. In some cases, there are additional notes or specifications in parentheses, such as "(bitter cola)" or "(common)".

The dataset covers a diverse range of tree species, including both native and introduced species, and represents a snapshot of the tree diversity in the Afram Plains region. 

The list includes the local knowledge and usage of these tree species, as evidenced by the variety of common names provided. Some of the species are noted for their use in charcoal production, while others have cultural or economic significance, like the "bitter cola" (Garcinia kola) and "mahogany" (Khaya ivorensis).

The dataset provides valuable information on the diversity of tree species and local knowledge in the Afram Plains region of Ghana. It could be useful for ecological research, conservation efforts, or ethnobotanical studies..
DOI: 10.17632/v6fnd9ryst.1
title: Enzymatic protein fusions with 100% product yield

description: Primary data for "Enzymatic protein fusions with 100% product yield"
DOI: 10.17632/xygfn6kbgb.1
title: Innate immune memory after brain injury drives inflammatory cardiac dysfunction

description: The medical burden of stroke extends beyond the brain injury itself and is largely determined by chronic comorbidities that develop secondarily. We hypothesized that these comorbidities might share a common immunological cause, yet chronic effects post-stroke on systemic immunity are underexplored. Here, we identify myeloid innate immune memory as a cause of remote organ dysfunction after stroke. Single-cell sequencing revealed persistent pro-inflammatory changes in monocytes/macrophages in multiple organs up to three months after ischemic brain injury, notably in the heart, leading to cardiac fibrosis and dysfunction. IL-1β was identified as a key driver of epigenetic changes in innate immune memory. These changes could be transplanted to naïve mice, inducing cardiac dysfunction. By neutralizing post-stroke IL-1β or blocking pro-inflammatory monocyte trafficking with a CCR2/5 inhibitor, we prevented post-stroke cardiac dysfunction. Such immune-targeted therapies could potentially prevent various IL-1β-mediated comorbidities, offering a framework for secondary prevention immunotherapy.
DOI: 10.17632/8pcyxv2rg6.1
title: Depositional Architecture of Pleistocene Barrier Revealed by Ground-Penetrating Radar Data at Paraná Coast, Southern Brazil

description: The dataset includes the raw GPR and kmz with vibrocore,gpr profiles and dating location.