cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.djaqqm
title: Occurrence Download

description: A dataset containing 7022 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Aphis gossypii Glover, 1877",
 "TaxonKey is Aphis illinoisensis Shimer, 1866",
 "TaxonKey is Aphis lugentis Williams, 1911",
 "TaxonKey is Aphis nerii Boyer de Fonscolombe, 1841",
 "TaxonKey is Aphis oenotherae Oestlund, 1887",
 "TaxonKey is Aphis salicariae Koch, 1855",
 "TaxonKey is Aphis sambuci Linnaeus, 1758",
 "TaxonKey is Aphis spiraecola Patch, 1914",
 "TaxonKey is Aphis spiraephila Patch, 1914",
 "TaxonKey is Adelges pectinatae (Cholodkovsky, 1888)",
 "TaxonKey is Aphytis chilensis Howard, 1900",
 "TaxonKey is Aphytis diaspidis (Howard, 1881)",
 "TaxonKey is Aphytis lingnanensis Compere, 1955",
 "TaxonKey is Apion haematodes Kirby, 1808",
 "TaxonKey is Apionsoma misakianum (Ikeda, 1904)",
 "TaxonKey is Apionsoma trichocephalus Sluiter, 1902",
 "TaxonKey is Apios americana Medik."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7022 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011196-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ny5rqr
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 {
 "or" : [
 "Country is China",
 "Country is India"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pantholops Hodgson, 1834"
 ]
}

 The dataset includes 29 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244526-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tc36a2
title: Occurrence Download

description: A dataset containing 374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Plantago major L."
 ]
}

 The dataset includes 374 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0247931-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yd6zqk
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Philippia nyassana Alm & T.C.E.Fr."
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011196-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ncmw3
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "TaxonKey is Saguinus fuscicollis (Spix, 1823)"
 ]
}

 The dataset includes 27 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050659-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zs429c
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.5_1",
 "TaxonKey is Bassariscus astutus (Lichtenstein, 1830)"
 ]
}

 The dataset includes 231 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246860-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7282/t3s46vc5
title: Probability-weighted ensembles of U.S. county-level climate projections for climate risk analysis: Mapping

description: Quantitative assessment of climate change risk requires a method for constructing probabilistic time series of changes in physical climate parameters. Here, we develop two such methods, Surrogate/Model Mixed Ensemble (SMME) and Monte Carlo Pattern/Residual (MCPR), and apply them to construct joint probability density functions (PDFs) of temperature and precipitation change over the 21st century for every county in the United States. Both methods produce likely (67% probability) temperature and precipitation projections consistent with the Intergovernmental Panel on Climate Change's interpretation of an equal-weighted Coupled Model Intercomparison Project 5 (CMIP5) ensemble, but also provide full PDFs that include tail estimates. For example, both methods indicate that, under representative concentration pathway (RCP) 8.5, there is a 5% chance that the contiguous United States could warm by at least 8°C. Variance decomposition of SMME and MCPR projections indicate that background variability dominates uncertainty in the early 21st century, while forcing-driven changes emerge in the second half of the 21st century. By separating CMIP5 projections into unforced and forced components using linear regression, these methods generate estimates of unforced variability from existing CMIP5 projections without requiring the computationally expensive use of multiple realizations of a single GCM.The MAPPING directory includes files with information about which weather station was mapped to each county, and information about that weather station (i.e. elevation, latitude, longitude, whether the station was located within the county or not).This data set is intended to accompany these studies:(1) T. Houser, R.E. Kopp, S.M. Hsiang, M. Delgado, A.S. Jina, K. Larsen,M. Mastrandrea, S. Mohan, R. Muir-Wood, D.J. Rasmussen, J. Rising,and P. Wilson. (2015). American Climate Prospectus: Economic Risksin the United States. Columbia University Press. ISBN: 978-0231174565(2) D. J. Rasmussen, M. Meinshausen, and R. E. Kopp. (2016). Probability-weighted ensembles of U.S. county-level climate projections for climaterisk analysis. Journal of Applied Meteorology and Climatology. DOI: 10.1175/JAMC-D-15-0302.1Please cite these works when using any results generated with these projections.Copyright (C) 2016 by ROBERT E. KOPP AND RHODIUM GROUP LLCThis dataset is made available under a non-Commercial Creative Commons License.https://creativecommons.org/licenses/by-nc/3.0/us/You are free to: 1. Share - copy and redistribute the material in any medium or format2. Remix, transform, and build upon the materialYou must:1. Attribution - You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.2. You may not use the material for commercial purposes.No warranties are given.
DOI: 10.5281/zenodo.18052712
title: A Novel Entomovirological Approach to Eradicating HIV: Integrating Insect-Derived Vectors, Microbiome Engineering, and CRISPR-Based Gene Therapy for Complete AIDS Cure

description: This conceptual manuscript delineates a pioneering therapeutic paradigm for the sterilizing eradication of HIV/AIDS, synergistically amalgamating insights from entomology, microbiology, virology, cellular biology, genetic engineering, and immunology. We posit a novel entomovirological vector, engineered from insect viruses such as baculoviruses, to deliver CRISPR-Cas9 systems precisely targeting HIV proviral DNA, concomitant with gut microbiome modulation to augment immune responses and preclude viral rebound. Feasibility is substantiated through rigorous mathematical modeling, encompassing extended differential equations with latency compartments, comprehensive local and global stability analyses via the next-generation matrix method and Lyapunov functions, Bayesian inference for parameter estimation in HIV dynamics, advanced sensitivity analyses including partial rank correlation coefficients (PRCC), and uncertainty quantification. Simulations, parameterized with empirical data, evince potential viral clearance to negligible levels. Enhanced graphical representations elucidate system dynamics and sensitivities. A multifaceted, empirically falsifiable roadmap, spanning preclinical to manufacturing phases with detailed experimental protocols, is delineated. This framework heralds a curative shift beyond extant antiretroviral therapies, harboring profound implications for personalized medicine and global HIV eradication.
DOI: 10.5281/zenodo.18177079
title: A Novel Entomovirological Approach to Eradicating HIV: Integrating Insect-Derived Vectors, Microbiome Engineering, and CRISPR-Based Gene Therapy for Complete AIDS Cure

description: This conceptual manuscript delineates a pioneering therapeutic paradigm for the sterilizing eradication of HIV/AIDS, synergistically amalgamating insights from entomology, microbiology, virology, cellular biology, genetic engineering, and immunology. We posit a novel entomovirological vector, engineered from insect viruses such as baculoviruses, to deliver CRISPR-Cas9 systems precisely targeting HIV proviral DNA, concomitant with gut microbiome modulation to augment immune responses and preclude viral rebound. Feasibility is substantiated through rigorous mathematical modeling, encompassing extended differential equations with latency compartments, comprehensive local and global stability analyses via the next-generation matrix method and Lyapunov functions, Bayesian inference for parameter estimation in HIV dynamics, advanced sensitivity analyses including partial rank correlation coefficients (PRCC), and uncertainty quantification. Simulations, parameterized with empirical data, evince potential viral clearance to negligible levels. Enhanced graphical representations elucidate system dynamics and sensitivities. A multifaceted, empirically falsifiable roadmap, spanning preclinical to manufacturing phases with detailed experimental protocols, is delineated. This framework heralds a curative shift beyond extant antiretroviral therapies, harboring profound implications for personalized medicine and global HIV eradication.
DOI: 10.5281/zenodo.15137254
title: Table 1 in Subfossil rodents and tenrecs of Children's Cave, Madagascar

description: Table 1. Skull measurements of the modern and Children’s Cave (CC) subfossil species of Brachyuromys in millimetres. Range: minimum and maximum values, mean = average value, N = number of specimens measured. LTC: total length of skull; CIO: breadth of interorbital constriction; LS13: upper tooth row length; WM1: width of the upper M1; LMDB: maximum length of the mandible; LI13: lower tooth row length.
SpeciesLTCCIOLS13WM1LMDBLI13Brachyuromys betsileoensisN = 47N = 47N = 47N = 47N = 47N = 47modernRange30–374.3–5.45.8–7.21.7–2.620.7–26.66.6–7.8Mean344.96.82.1247.1Brachyuromys ramirohitraN = 27N = 27N = 27N = 27N = 27N = 27modernRange33.2–42.24.5–5.57.2–9.52.1–322.7–29.27.2–9.8Mean38.85.158.72.626.59.01Brachyuromys betsileoensisN = 1N = 1CC Lower Stratum1.636.85Brachyuromys betsileoensisN = 8N = 18N = 20N = 23N = 38CC Upper StratumRange4.77–5.45.99–6.81.56–2.4518.94–23.876.24–6.96Mean5.036.322.0122.246.63Brachyuromys ramirohitra CCN = 1N = 1N = 19.072.899.08
description: Published as part of Denys, Christiane, Gabriel, Nadine W., Lalis, Aude & Jenkins, Paulina, 2024, Subfossil rodents and tenrecs of Children's Cave, Madagascar, pp. 804 in Journal of Natural History 58 (25 - 28) on page 804, DOI: 10.1080/00222933.2024.2370663, http://zenodo.org/record/13219769
DOI: 10.5281/zenodo.15137255
title: Table 1 in Subfossil rodents and tenrecs of Children's Cave, Madagascar

description: Table 1. Skull measurements of the modern and Children’s Cave (CC) subfossil species of Brachyuromys in millimetres. Range: minimum and maximum values, mean = average value, N = number of specimens measured. LTC: total length of skull; CIO: breadth of interorbital constriction; LS13: upper tooth row length; WM1: width of the upper M1; LMDB: maximum length of the mandible; LI13: lower tooth row length.
SpeciesLTCCIOLS13WM1LMDBLI13Brachyuromys betsileoensisN = 47N = 47N = 47N = 47N = 47N = 47modernRange30–374.3–5.45.8–7.21.7–2.620.7–26.66.6–7.8Mean344.96.82.1247.1Brachyuromys ramirohitraN = 27N = 27N = 27N = 27N = 27N = 27modernRange33.2–42.24.5–5.57.2–9.52.1–322.7–29.27.2–9.8Mean38.85.158.72.626.59.01Brachyuromys betsileoensisN = 1N = 1CC Lower Stratum1.636.85Brachyuromys betsileoensisN = 8N = 18N = 20N = 23N = 38CC Upper StratumRange4.77–5.45.99–6.81.56–2.4518.94–23.876.24–6.96Mean5.036.322.0122.246.63Brachyuromys ramirohitra CCN = 1N = 1N = 19.072.899.08
description: Published as part of Denys, Christiane, Gabriel, Nadine W., Lalis, Aude & Jenkins, Paulina, 2024, Subfossil rodents and tenrecs of Children's Cave, Madagascar, pp. 804 in Journal of Natural History 58 (25 - 28) on page 804, DOI: 10.1080/00222933.2024.2370663, http://zenodo.org/record/13219769
DOI: 10.5281/zenodo.15137256
title: Table 2 in Subfossil rodents and tenrecs of Children's Cave, Madagascar

description: Table 2. Cranio-dental measurements of the modern and Children’s Cave (CC) subfossil species of Macrotarsomys in millimetres. Range: minimum and maximum values, mean = average value, N = number of specimens measured. LS13: upper tooth row length; WM1: width of the upper M1; LMDB: maximum length of the mandible; HMDB: maximal height of the coronoid process; LI13: lower tooth row length.
Species, siteLS13WM1LMDBHMDBLI13Macrotarsomys bastardi modernN = 52N = 52N = 52N = 52N = 52Range3.36–4.351.09–1.3415.64–19.595.72–7.963.52–4.44Mean3.941.2417.486.953.87Macrotarsomys ingens modernN = 11N = 11N = 11N = 11N = 11Range4.53–5.051.62–1.7923.83–25.78.76–10.074.85–5.52Mean4.841.724.529.415.2Macrotarsomys petteriN = 1N = 1N = 15.31.445.2Macrotarsomys cf. bastardiN = 3N = 3N = 4N = 3N = 2Children’s CaveRange3.42–3.721.05–1.114.18–16.276.12–6.852.96, 3.65Mean3.541.0715.226.363.31Macrotarsomys cf. petteriN = 3N = 6N = 1AndrahomanaRange5.3–5.71.31–1.545.5Mean5.51.4Rattus rattusN = 25N = 25N = 25N = 25N = 25Modern MadagascarRange6.22–7.01.9–3.223.8–28.89.4–13.76.1–6.9Mean6.562.125.711.36.4Rattus rattusN = 19N = 19N = 16N = 15N = 36Children’s CaveRange6–7.11.8–2.121.0–26.49.5–12.55.7–6.9Mean6.632.024.8410.856.44Mus musculusN = 19N = 19N = 19N = 19N = 19Modern MadagascarRange2.8–3.40.9–1.310.0–13.64.2–5.52.7–3.4Mean3.221.112.334.972.9Mus musculusN = 8N = 8N = 24N = 17N = 24Children’s CaveRange3.1–3.41.1–1.411.1–13.84.1–5.92.6–3.1Mean3.31.1812.215.222.86
description: Published as part of Denys, Christiane, Gabriel, Nadine W., Lalis, Aude & Jenkins, Paulina, 2024, Subfossil rodents and tenrecs of Children's Cave, Madagascar, pp. 807-809 in Journal of Natural History 58 (25 - 28) on page 807, DOI: 10.1080/00222933.2024.2370663, http://zenodo.org/record/13219769
DOI: 10.5281/zenodo.15137257
title: Table 2 in Subfossil rodents and tenrecs of Children's Cave, Madagascar

description: Table 2. Cranio-dental measurements of the modern and Children’s Cave (CC) subfossil species of Macrotarsomys in millimetres. Range: minimum and maximum values, mean = average value, N = number of specimens measured. LS13: upper tooth row length; WM1: width of the upper M1; LMDB: maximum length of the mandible; HMDB: maximal height of the coronoid process; LI13: lower tooth row length.
Species, siteLS13WM1LMDBHMDBLI13Macrotarsomys bastardi modernN = 52N = 52N = 52N = 52N = 52Range3.36–4.351.09–1.3415.64–19.595.72–7.963.52–4.44Mean3.941.2417.486.953.87Macrotarsomys ingens modernN = 11N = 11N = 11N = 11N = 11Range4.53–5.051.62–1.7923.83–25.78.76–10.074.85–5.52Mean4.841.724.529.415.2Macrotarsomys petteriN = 1N = 1N = 15.31.445.2Macrotarsomys cf. bastardiN = 3N = 3N = 4N = 3N = 2Children’s CaveRange3.42–3.721.05–1.114.18–16.276.12–6.852.96, 3.65Mean3.541.0715.226.363.31Macrotarsomys cf. petteriN = 3N = 6N = 1AndrahomanaRange5.3–5.71.31–1.545.5Mean5.51.4Rattus rattusN = 25N = 25N = 25N = 25N = 25Modern MadagascarRange6.22–7.01.9–3.223.8–28.89.4–13.76.1–6.9Mean6.562.125.711.36.4Rattus rattusN = 19N = 19N = 16N = 15N = 36Children’s CaveRange6–7.11.8–2.121.0–26.49.5–12.55.7–6.9Mean6.632.024.8410.856.44Mus musculusN = 19N = 19N = 19N = 19N = 19Modern MadagascarRange2.8–3.40.9–1.310.0–13.64.2–5.52.7–3.4Mean3.221.112.334.972.9Mus musculusN = 8N = 8N = 24N = 17N = 24Children’s CaveRange3.1–3.41.1–1.411.1–13.84.1–5.92.6–3.1Mean3.31.1812.215.222.86
description: Published as part of Denys, Christiane, Gabriel, Nadine W., Lalis, Aude & Jenkins, Paulina, 2024, Subfossil rodents and tenrecs of Children's Cave, Madagascar, pp. 807-809 in Journal of Natural History 58 (25 - 28) on page 807, DOI: 10.1080/00222933.2024.2370663, http://zenodo.org/record/13219769
DOI: 10.5281/zenodo.15137259
title: Table 4 in Subfossil rodents and tenrecs of Children's Cave, Madagascar

description: Table 4. Comparative measurements of the mandible of modern and Children’s Cave subfossil species of Microgale in millimetres. Range: minimum and maximum values, mean = average value, N = number of specimens measured. MH: mandible height; ARL: ascending ramus length.
SpeciesMHARLMicrogale cowani ModernN = 126N = 123Range4.4–5.44.7–5.7Mean4.835.11Microgale cowani Children’s CaveN = 106N = 106Range4.25–5.314.43–5.48Mean4.864.99Microgale pusilla ModernN = 15N = 14Range3.6–4.03.1–3.7Mean3.763.53Microgale pusilla Children’s CaveN = 35N = 35Range3.36–4.123.19–4.22Mean3.823.65Nesogale dobsoni ModernN = 61N = 61Range7.0–8.56.7–8.3Mean7.737.42Nesogale dobsoni Children’s CaveN = 11N = 11Range6.8–8.06.5–8.1Mean7.627.24Nesogale talazaci ModernN = 72N = 72Range8.5–9.68.2–10.3Mean9.29.36Oryzorictes tetradactylus ModernN = 18N = 18Range5.5–6.86.6–7.9Mean6.17.46Oryzorictes tetradactylus Children’s CaveN = 46N = 47Range5.5–6.86.6–8.2Mean6.157.33Oryzorictes hova ModernN = 20N = 20Range6.1–7.67.3–9.1Mean6.928.12
description: Published as part of Denys, Christiane, Gabriel, Nadine W., Lalis, Aude & Jenkins, Paulina, 2024, Subfossil rodents and tenrecs of Children's Cave, Madagascar, pp. 814-818 in Journal of Natural History 58 (25 - 28) on page 814, DOI: 10.1080/00222933.2024.2370663, http://zenodo.org/record/13219769
DOI: 10.5281/zenodo.15137258
title: Table 4 in Subfossil rodents and tenrecs of Children's Cave, Madagascar

description: Table 4. Comparative measurements of the mandible of modern and Children’s Cave subfossil species of Microgale in millimetres. Range: minimum and maximum values, mean = average value, N = number of specimens measured. MH: mandible height; ARL: ascending ramus length.
SpeciesMHARLMicrogale cowani ModernN = 126N = 123Range4.4–5.44.7–5.7Mean4.835.11Microgale cowani Children’s CaveN = 106N = 106Range4.25–5.314.43–5.48Mean4.864.99Microgale pusilla ModernN = 15N = 14Range3.6–4.03.1–3.7Mean3.763.53Microgale pusilla Children’s CaveN = 35N = 35Range3.36–4.123.19–4.22Mean3.823.65Nesogale dobsoni ModernN = 61N = 61Range7.0–8.56.7–8.3Mean7.737.42Nesogale dobsoni Children’s CaveN = 11N = 11Range6.8–8.06.5–8.1Mean7.627.24Nesogale talazaci ModernN = 72N = 72Range8.5–9.68.2–10.3Mean9.29.36Oryzorictes tetradactylus ModernN = 18N = 18Range5.5–6.86.6–7.9Mean6.17.46Oryzorictes tetradactylus Children’s CaveN = 46N = 47Range5.5–6.86.6–8.2Mean6.157.33Oryzorictes hova ModernN = 20N = 20Range6.1–7.67.3–9.1Mean6.928.12
description: Published as part of Denys, Christiane, Gabriel, Nadine W., Lalis, Aude & Jenkins, Paulina, 2024, Subfossil rodents and tenrecs of Children's Cave, Madagascar, pp. 814-818 in Journal of Natural History 58 (25 - 28) on page 814, DOI: 10.1080/00222933.2024.2370663, http://zenodo.org/record/13219769
DOI: 10.5281/zenodo.15137260
title: Table 6 in Subfossil rodents and tenrecs of Children's Cave, Madagascar

description: Table 6. Comparisons of the rodent and tenrecid faunal lists of Children’s Cave (this work) to the sites of Lavajaza (Denys et al. 2021), Andrahomana (MacPhee 1987; Goodman et al. 2007; Burney et al. 2008) and Ankilitelo (Muldoon et al. 2009). Notes on species recorded from Andrahomana: a Microgale brevicaudata listed by Burney et al. (2008) is more likely to be M. macpheei; b Microgale principula was recorded by MacPhee (1987) and Microgale longicaudata by Burney et al. (2008) but because of similarities in dentition, it is possible that the two species have been confused and only one of these taxa is represented. Note on Lavajaza: information is only available on Rodentia from this site, no observations were made on Tenrecidae.
Taxonomic groupChildren’s CaveLavajazaAndrahomanaAnkiliteloRodentia: Muridae: NesomyinaeBrachyuromys betsileoensisBrachyuromys betsileoensisBrachyuromys ramirohitraBrachyuromys ramirohitraEliurus myoxinusEliurus myoxinusEliurus sp.Eliurus sp.Hypogeomys antimenaHypogeomys australis extinctMacrotarsomys bastardiMacrotarsomys bastardiMacrotarsomys bastardiMacrotarsomys petteriMacrotarsomys petteriRodentia: Muridae: MurinaeMus musculusMus musculusMus musculusMus musculusRattus rattusRattus rattusRattus rattusRattus rattusAfrotheria: Tenrecidae: TenrecinaeEchinops telfairiEchinops telfairiSetifer setosusSetifer setosusSetifer setosusTenrec ecaudatusTenrec ecaudatusTenrec ecaudatusAfrotheria: Tenrecidae: GeogalinaeGeogale auritaGeogale auritaAfrotheria: Tenrecidae: OryzorictinaeMicrogale brevicaudata aMicrogale brevicaudataMicrogale cowaniMicrogale longicaudata bMicrogale macpheei extinctMicrogale cf. majoriMicrogale nasoloi Microgale principula bMicrogale nasoloiMicrogale pusillaMicrogale pusillaNesogale dobsoniOryzorictes tetradactylusEulipotyphla: SoricidaeSuncus etruscus
description: Published as part of Denys, Christiane, Gabriel, Nadine W., Lalis, Aude & Jenkins, Paulina, 2024, Subfossil rodents and tenrecs of Children's Cave, Madagascar, pp. 821 in Journal of Natural History 58 (25 - 28) on page 821, DOI: 10.1080/00222933.2024.2370663, http://zenodo.org/record/13219769