cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21828553.v1
title: Code from The island biogeography of human population size

description: For decades, biogeographers have sought a better understanding of how organisms are distributed among islands. However, the island biogeography of humans remains largely unknown. Here, we investigate how human population size varies among 486 islands at two spatial scales. At a global scale, we tested whether population size increases with island area and declines with island elevation and nearest mainland, as is common in non-human species, or whether humans escape such biogeographic constraints. At a regional scale, we tested whether population sizes vary among islands within archipelagos according to the positioning of different cultural source pools. Results illustrate that on a global scale, human populations increased in size with island area, similar to non-human species, yet they did not decline in size with elevation and distance to nearest mainland. At a regional scale, human population size often varied among islands within archipelagos relative to the location of different cultural source pools. Despite broad-scale similarities in the geographical distribution of human and non-human species among islands, results from this study indicate that the island biogeography of humans may also be influenced by archipelago-specific social, political and historical circumstances.
DOI: 10.6084/m9.figshare.21908496
title: Additional file 2

description: Code
DOI: 10.6084/m9.figshare.21908496.v1
title: Additional file 2

description: Code
DOI: 10.6084/m9.figshare.21908514
title: Additional file 2

description: Code
DOI: 10.6084/m9.figshare.21908514.v1
title: Additional file 2

description: Code
DOI: 10.17894/ucph.72ece95c-5a8f-4d3f-b33f-3d50405d2efe
title: The eMPL and one-fold integral expressions for two three-loop elliptic ladder integrals
DOI: 10.5517/ccdc.csd.cc2c60m7
title: CCDC 2180528: Experimental Crystal Structure Determination

description: Related Article: Evangelia Sifnaiou, Antonia Garypidou, Konstantinos Ypsilantis, John C. Plakatouras, Achilleas Garoufis|2022|Polyhedron|231|116252|doi:10.1016/j.poly.2022.116252
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2czjvr
title: CCDC 2204095: Experimental Crystal Structure Determination

description: Related Article: Svitlana I. Orysyk, Yurii L. Zborovskii, Viktor V. Orysyk, Liudmyla V. Garmanchuk, Polina V. Borovyk, Svitlana V. Shishkina, Olha Pavliuk, Vasyl I. Pekhnyo, Mykhailo V. Vovk|2023|Polyhedron|231|116272|doi:10.1016/j.poly.2022.116272
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2czjws
title: CCDC 2204096: Experimental Crystal Structure Determination

description: Related Article: Svitlana I. Orysyk, Yurii L. Zborovskii, Viktor V. Orysyk, Liudmyla V. Garmanchuk, Polina V. Borovyk, Svitlana V. Shishkina, Olha Pavliuk, Vasyl I. Pekhnyo, Mykhailo V. Vovk|2023|Polyhedron|231|116272|doi:10.1016/j.poly.2022.116272
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d8tm4
title: CCDC 2213016: Experimental Crystal Structure Determination

description: Related Article: Henrique Vieira Reis Silva, Guilherme Álvaro Ferreira da Silva, Bruno Zavan, Rafael Pereira Machado, João Honorato de Araujo-Neto, Javier Alcides Ellena, Marisa Ionta, Marília Imaculada Frazão Barbosa, Antônio Carlos Doriguetto|2022|Polyhedron|231|116267|doi:10.1016/j.poly.2022.116267
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c60n8
title: CCDC 2180529: Experimental Crystal Structure Determination

description: Related Article: Evangelia Sifnaiou, Antonia Garypidou, Konstantinos Ypsilantis, John C. Plakatouras, Achilleas Garoufis|2022|Polyhedron|231|116252|doi:10.1016/j.poly.2022.116252
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21908505
title: Genome of Parnassius glacialis

description: Assembled genome of <em>Parnassius glacialis</em>
DOI: 10.6084/m9.figshare.21908505.v1
title: Genome of Parnassius glacialis

description: Assembled genome of <em>Parnassius glacialis</em>
DOI: 10.17632/x7994pz5gd.1
title: LINF_350011600

description: vacuolar ATP synthase subunit d
Leishmania infantum (strain JPCM5)
DOI: 10.17632/dy8kpzwb65.1
title: LINF_350010800

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/m3pr9tzdyf.1
title: Data for BIM-based Automated Quantity Take-off Feedback System for Prefabricated Building Design Phase

description: This research proposes a BIM-based QTO feedback system for prefabricated building design phase. It contributes to the body of knowledge by accurately identifying data requests among stakeholders through a well-planned workflow and breaking technical limitations by automated Dynamo programming. The proposed framework allows the clients to get timely QTO feedback on building components through a user-friendly manner and view data in a straightforward format, thus saving iterative design time and improving design solution quality.
DOI: 10.17632/8dxbm7wx5s.1
title: Propofol inhibition of hepatocellular carcinoma via the prevention of reactive oxygen species-induced Cav1 and HO-1 activation

description: In this study, we showed that Propofol could effectively suppressed the growth of tumor and metastasis derived from metastatic HCC cells, and the growth of HCC patient-derived xenograft. Secondly, we delineated the effect of reactive oxygenase species (ROS) in the activation of Src/caveolin-1 (Cav1). The ROS-induced Cav1 resulted in the upregulation and nuclear translocation of heme oxygenase 1 (HO-1), resulting in HCC aggressive properties. Thirdly, we demonstrated the effect of Propofol in upregulation of mitochondrial antioxidant capacity and suppression of Cav1 expression as well as HO-1 activation in HCC cells. Lastly, we showed that Propofol did not affect the growth of normal hepatocyte, and the exclusive expression of Cav1 and HO-1 in metastatic HCC cells. These findings implicate the potential to develop anti-Cav1 and anti-HO-1 reagents without adverse effects on normal hepatocytes as a new strategy for treating HCC.
DOI: 10.17632/6dsc8gydf9.1
title: LINF_350010300

description: phosphatidylinositol-4-phosphate 5-kinase | PI4P5K
Leishmania infantum (strain JPCM5)
DOI: 10.17632/b78jfg3gn5.1
title: Archivos IABalance

description: Espacio compartiddo del proyecti IABalance
DOI: 10.17632/prpshgb483.1
title: LINF_350012200

description: AMP-activated protein kinase - gamma regulatory subunit | AMPKG
Leishmania infantum (strain JPCM5)
DOI: 10.17632/44dtg2m6y9.1
title: NGS_raw_data

description: To investigate which of the intrinsic of a horizontally acquired gene and the environment can be a barrier to HGT, we transferred and expressed 44 E.coli orthologs into S. Typhimurium strain 4/74. Pooled growth assays were performed for the 44 mutants and a WT in four infection relevant environments that are representative of an intra-macrophage environment during an infection. We estimated relative fitness effects in four infection relevant environments for the 44 Salmonella mutants with changes in gene frequencies estimated using Next-Generation Sequencing. 
Preprint can be found at https://www.biorxiv.org/content/10.1101/2022.04.01.486712v2.full
Codes for processing the reads and all analysis carried out in the paper are available on GitHub. https://github.com/ramabht/Barriers_to_HGT
DOI: 10.17632/265c2tb8cp.1
title: soft skills

description: soft skills
DOI: 10.48544/45fc4eb9-f9f6-43df-a287-32ea1d25b898
title: test new
DOI: 10.6084/m9.figshare.21908541
title: Protein sequences of Parnassius glacialis

description: Protein sequences of <em>Parnassius glacialis</em>
DOI: 10.6084/m9.figshare.21908541.v1
title: Protein sequences of Parnassius glacialis

description: Protein sequences of <em>Parnassius glacialis</em>
DOI: 10.6084/m9.figshare.21908559.v1
title: Supplementary Material for: Increased Spleen Volume in Hepatocellular Carcinoma Patients Treated with Atezolizumab plus Bevacizumab in Comparison to Lenvatinib: A Retrospective Analysis

description: <b><i>Introduction:</i></b> We previously reported 2 cases of esophageal varices rupture during atezolizumab and bevacizumab (Atez/Bev) treatment, in which the spleen volume gradually increased. The aim of this retrospective study is to compare the chronological change in spleen volume of patients treated with Atez/Bev and lenvatinib (LEN). <b><i>Methods:</i></b> Seventy-two patients (Atez/Bev group, <i>n</i> = 26; LEN group, <i>n</i> = 46) were included in this retrospective study. The splenic parenchyma area was measured based on CT imaging. We used mixed-effect regression models with random intercepts to test the difference in the rate of change in spleen volume between the Atez/Bev and LEN groups. <b><i>Results:</i></b> The median age of the Atez/Bev and LEN groups was 74.0 (71.0–82.0) and 72.0 (67.5–76.0), respectively. About 80% patients were male. The mALBI grade was classified as 1, 2a, 2b, and 3 in 10 (38.5%), 6 (23.1%), 10 (38.5%), and zero (0.0%) patients, respectively, in the Atez/Bev group and 21 (45.7%), 9 (19.6%), 15 (32.6%), and 1 (2.2%) patient in the LEN group (<i>p</i> = 0.9). The median baseline neutrophil-to-lymphocyte ratio (NLR) was 2.61 (1.80–3.41) in the Atez/Bev group and 2.71 (1.76–3.67) in the LEN group (<i>p</i> = 1.0). The median baseline spleen volume was 185 (132–246) cm<sup>3</sup> in the Atez/Bev group and 231 (150–355) cm<sup>3</sup> in the LEN group. The spleen volume gradually increased during Atez/Bev treatment (2.41 cm<sup>3</sup> per week), while it was mostly consistent during LEN treatment (0.32 cm<sup>3</sup> per week). Among patients with mALBI grade 2b or 3, the spleen volume increased in the Atez/Bev group (2.99 cm<sup>3</sup> per week) and slightly decreased in the LEN group (0.82 cm<sup>3</sup> per week), without statistical significance (<i>p</i> = 0.07). Among patients with a baseline NLR of &gt;2.68, the spleen volume increased at a rate of 2.57 cm<sup>3</sup> per week in the Atez/Bev group and decreased at a rate of 1.18 cm<sup>3</sup> per week in the LEN group. The difference in the slope of the two groups was statistically significant (<i>p</i> = 0.04). <b><i>Discussion/Conclusion:</i></b> Atez/Bev treatment could result in an increased spleen volume. Caution is required when managing patients treated with Atez/Bev, especially those with a high NLR.
DOI: 10.6084/m9.figshare.21908550
title: cds.fasta

description: The gene model of Saururus chinensis
DOI: 10.6084/m9.figshare.21908550.v1
title: cds.fasta

description: The gene model of Saururus chinensis
DOI: 10.5281/zenodo.7544118
title: Ogham Stone Maps: Squirrel Stones in Ireland

description: Ogham Stone Maps: Squirrel Stones in Ireland Mapping of Squirrel Stones (Q106602643) aggregated to the administrative level of counties and baronies, created with QGIS from the attached GeoJSON files and the baselayer Esri.WorldShadedRelief (Tiles © Esri - Source: Esri), EPSG:3857 (as of 01/17/2023).
DOI: 10.5281/zenodo.7544117
title: Ogham Stone Maps: Squirrel Stones in Ireland

description: Ogham Stone Maps: Squirrel Stones in Ireland Mapping of Squirrel Stones (Q106602643) aggregated to the administrative level of counties and baronies, created with QGIS from the attached GeoJSON files and the baselayer Esri.WorldShadedRelief (Tiles © Esri - Source: Esri), EPSG:3857 (as of 01/17/2023).
DOI: 10.5281/zenodo.7503481
title: Data supplement for "Nonreciprocity induces resonances in two-field Cahn-Hilliard model".

description: Mathematica notebooks that support the weakly nonlinear analysis and the codes that create all figures in "Nonreciprocity induces resonances in two-field Cahn-Hilliard model". ".
DOI: 10.5281/zenodo.7544108
title: Simulation of Moisture intrusions into the Arctic: New insights from a mid-April 2020 case during MOSAiC

description: This dataset contains the model configuration files and selected output data of the large-eddy simulation experiments as described in the publication "<em>Moisture intrusions into the Arctic: New insights from a mid-April 2020 case during MOSAiC</em>" being submitted to <em>Frontiers in Earth Science (Section Atmospheric Science)</em>
description: We gratefully acknowledge the funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – Projektnummer 268020496 – TRR 172, within the Transregional Collaborative Research Center "ArctiC Amplification: Climate Relevant Atmospheric and SurfaCe Processes, and Feedback Mechanisms (AC) 3 ". We thank ECMWF for providing access to the large-scale model analyses and forecasts fields used to drive the LES experiments. The Gauss Centre for Supercomputing e.V. (www.gauss-centre.eu) is acknowledged for providing computing time on the GCS Supercomputer JUWELS at the Jülich Supercomputing Centre (JSC) under project VIRTUALLAB. We further thank the Alfred Wegener Institute (AWI) and the MOSAiC science teams for making the field campaign happen.
DOI: 10.5281/zenodo.7544107
title: Simulation of Moisture intrusions into the Arctic: New insights from a mid-April 2020 case during MOSAiC

description: This dataset contains the model configuration files and selected output data of the large-eddy simulation experiments as described in the publication "<em>Moisture intrusions into the Arctic: New insights from a mid-April 2020 case during MOSAiC</em>" being submitted to <em>Frontiers in Earth Science (Section Atmospheric Science)</em>
description: We gratefully acknowledge the funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – Projektnummer 268020496 – TRR 172, within the Transregional Collaborative Research Center "ArctiC Amplification: Climate Relevant Atmospheric and SurfaCe Processes, and Feedback Mechanisms (AC) 3 ". We thank ECMWF for providing access to the large-scale model analyses and forecasts fields used to drive the LES experiments. The Gauss Centre for Supercomputing e.V. (www.gauss-centre.eu) is acknowledged for providing computing time on the GCS Supercomputer JUWELS at the Jülich Supercomputing Centre (JSC) under project VIRTUALLAB. We further thank the Alfred Wegener Institute (AWI) and the MOSAiC science teams for making the field campaign happen.
DOI: 10.6084/m9.figshare.21908565
title: protein.fasta

description: The gene model of Saururus chinensis
DOI: 10.6084/m9.figshare.21908565.v1
title: protein.fasta

description: The gene model of Saururus chinensis
DOI: 10.5281/zenodo.7541686
title: Epidote - Sample 1 NanED Round Robin, Data: ESR8 & ESR9

description: <em><strong>Epidote</strong></em> The following submission contains the data collection and processing for the sample epidote under the NanEd round-robin project. Precession Electron Diffraction (PED) was used to collect the dataset on the target crystal. The dataset was processed with PETS2 and eADT software. The table below summarizes the data collection parameters for the dataset. <strong>General information:</strong> Project NanED (www.naned.eu) ESR Project ESR8 & ESR9 - Round Robin Project Label RR1 Sample Label RR1-S1_PISA Data set Label RR_Cry4 <strong>Instrumental:</strong> Instrument FEI TECNAI F30 STWIN Radiation source FEG Accelerating voltage 300 kV Wavelength 0.0197 Å Probe Type Nanodiffraction Beam Diameter 200nm Beam Convergence Semi-parallel beam Detector US4000 - CCD camera GATAN (16-bit) (bottom mounted) Number of pixels in the image 2048 x 2048 Pixel size 15 µm x 15 µm Camera Length / Effective Camera Length 1000 mm / 1200 mm Calibration constant (not corrected for Effective Camera length) 0.00126 Å<sup>-1</sup>/pixel Hardware Binning 2 <strong>Sample description:</strong> Name Epidote Chemical composition Ca<sub>2</sub>Fe<sub>x</sub>Al<sub>3-x</sub>Si<sub>3</sub>O<sub>13</sub>H Sample source Natural source from Val d'Ossola, Italy Sample preparation Grinded in an Agatha mortar and suspended in 1ml of EtOH. 4 µL of the suspension were dropped with a pipette on the carbon side of a carbon-coated copper grid (300 mesh). <strong>Experimental:</strong> Data Type Electron diffraction data - 3D ED Data collection method Precession Temperature (K) used during data collection 293 K Number of crystals contributing to the data set 1 Number of experimental frames 141 tilt range, tilt step, tilt per frame -70° to +70°, 1°, 0° Precession angle 1° Exposure time per frame 2 s <strong>Software:</strong> Software used for the data collection Gatan Digital Micrograph software Software used for processing PETS2 and eADT <strong>Authorship and bibliography</strong> Author(s) of the data Laura Gemmrich Hernández (ESR8) & Marco Santucci (ESR9) Related data Publication(s) <strong>Files and data formats</strong> Image folder img: Folder containing images of the diffraction pattern from each frame. Image format tiff_16bit_unsigned
DOI: 10.5281/zenodo.7543856
title: Natrolite - Sample 2 NanED Round Robin, Data: ESR8 & ESR9

description: <em><strong>Natrolite</strong></em> The following submission contains the data collection and processing for the sample natrolite under the NanEd round-robin project. Precession Electron Diffraction (PED) was used to collect the dataset on the target crystal. The dataset was processed with PETS2 and eADT software. The table below summarizes the data collection parameters for the dataset. <strong>General information:</strong> Project NanED (www.naned.eu) ESR Project ESR8 & ESR9 - Round Robin Project Label RR2 Sample Label RR2-S2_ PRAHA Data set Label RR2_Cry2 <strong>Instrumental:</strong> Instrument FEI TECNAI F30 STWIN Radiation source FEG Accelerating voltage 300 kV Wavelength 0.0197 Å Probe Type Nanodiffraction Beam Diameter 200nm Beam Convergence Semi-parallel beam Detector US4000 - CCD camera GATAN (16-bit) (bottom mounted) Number of pixels in the image 2048 x 2048 Pixel size 15 µm x 15 µm Camera Length / Effective Camera Length 750 mm / 702 mm Calibration constant (not corrected for Effective Camera length) 0.00152 Å<sup>-1</sup>/pixel Hardware Binning 2 <strong>Sample description:</strong> Name Natrolite Chemical composition Na<sub>2</sub>Al<sub>2</sub>Si<sub>3</sub>O<sub>10</sub>·2H<sub>2</sub>O Sample source Natural sample from Marianska Skala, Usti nad Labem, Czechia Sample preparation The crystals were grinded in an agata mortar and part of the resulting powder was loaded on the carbon side of a carbon-coated copper grid (300 mesh). <strong>Experimental:</strong> Data Type Electron diffraction data - 3D ED Data collection method Precession Temperature (K) used during data collection 293 K Number of crystals contributing to the data set 1 Number of experimental frames 131 tilt range, tilt step, tilt per frame -65° to +65°, 1°, 0° Precession angle 1° Exposure time per frame 250 ms <strong>Software:</strong> Software used for the data collection Gatan Digital Micrograph software Software used for processing PETS2 and eADT <strong>Authorship and bibliography</strong> Author(s) of the data Laura Gemmrich Hernández (ESR8) & Marco Santucci (ESR9) Related data Publication(s) <strong>Files and data formats</strong> Image folder img: Folder containing images of the diffraction pattern from each frame. Image format tiff_16bit_unsigned
DOI: 10.5281/zenodo.7543857
title: Natrolite - Sample 2 NanED Round Robin, Data: ESR8 & ESR9

description: <em><strong>Natrolite</strong></em> The following submission contains the data collection and processing for the sample natrolite under the NanEd round-robin project. Precession Electron Diffraction (PED) was used to collect the dataset on the target crystal. The dataset was processed with PETS2 and eADT software. The table below summarizes the data collection parameters for the dataset. <strong>General information:</strong> Project NanED (www.naned.eu) ESR Project ESR8 & ESR9 - Round Robin Project Label RR2 Sample Label RR2-S2_ PRAHA Data set Label RR2_Cry2 <strong>Instrumental:</strong> Instrument FEI TECNAI F30 STWIN Radiation source FEG Accelerating voltage 300 kV Wavelength 0.0197 Å Probe Type Nanodiffraction Beam Diameter 200nm Beam Convergence Semi-parallel beam Detector US4000 - CCD camera GATAN (16-bit) (bottom mounted) Number of pixels in the image 2048 x 2048 Pixel size 15 µm x 15 µm Camera Length / Effective Camera Length 750 mm / 702 mm Calibration constant (not corrected for Effective Camera length) 0.00152 Å<sup>-1</sup>/pixel Hardware Binning 2 <strong>Sample description:</strong> Name Natrolite Chemical composition Na<sub>2</sub>Al<sub>2</sub>Si<sub>3</sub>O<sub>10</sub>·2H<sub>2</sub>O Sample source Natural sample from Marianska Skala, Usti nad Labem, Czechia Sample preparation The crystals were grinded in an agata mortar and part of the resulting powder was loaded on the carbon side of a carbon-coated copper grid (300 mesh). <strong>Experimental:</strong> Data Type Electron diffraction data - 3D ED Data collection method Precession Temperature (K) used during data collection 293 K Number of crystals contributing to the data set 1 Number of experimental frames 131 tilt range, tilt step, tilt per frame -65° to +65°, 1°, 0° Precession angle 1° Exposure time per frame 250 ms <strong>Software:</strong> Software used for the data collection Gatan Digital Micrograph software Software used for processing PETS2 and eADT <strong>Authorship and bibliography</strong> Author(s) of the data Laura Gemmrich Hernández (ESR8) & Marco Santucci (ESR9) Related data Publication(s) <strong>Files and data formats</strong> Image folder img: Folder containing images of the diffraction pattern from each frame. Image format tiff_16bit_unsigned