cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7798385.v1
title: Seismic traces recorded by station MZ03

description: Seismic traces in binary MiniSeed format recorded by station MZ03. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 19, 2016 to October 26, 2016.
DOI: 10.6084/m9.figshare.7798451.v2
title: Hybrid human mouse genome files

description: Files required for mapping to combined human-mouse (hg19-mm10) genome
DOI: 10.6084/m9.figshare.7798319
title: Graph partitioning algorithms for saptial cuts from Partitioning a reaction–diffusion ecological network for dynamic stability

description: Exhaustive, spectral and heuristic graph partitioning algorithms along with the intructions
DOI: 10.6084/m9.figshare.7798319.v1
title: Graph partitioning algorithms for saptial cuts from Partitioning a reaction–diffusion ecological network for dynamic stability

description: Exhaustive, spectral and heuristic graph partitioning algorithms along with the intructions
DOI: 10.6084/m9.figshare.7798268
title: Y chromosome genetic data defined by 23 short tandem repeats in a Serbian population on the Balkan Peninsula

description: <b>Background:</b> Serbs mainly live in the territory of the recently re-established state of Serbia. However, the turbulent history in the Balkan Peninsula has led to settlement of Serbs not only within present day Serbia, but also in different parts of neighbouring countries. <b>Aim:</b> To define polymorphisms of 23 Y-chromosomal short tandem repeat (STR) loci in a modern Serbian population from the central part of the Balkan Peninsula. <b>Subjects and methods:</b> The reference sample consisted of 303 men declared as Serbs over three generations. Localities of the collected materials include the territories of Serbia, Bosnia and Herzegovina, Croatia and Montenegro. DNA samples were typed using the PowerPlex<sup>®</sup>Y23 amplification kit. <b>Results:</b> The highest locus diversity was observed for DYS385 and DYS481. In this study the most abundant haplogroups were I2a, E1b1b, R1a and I1. The largest genetic distances between the Serbs and other close Southern Slavs were for the Macedonians and Slovenians. <b>Conclusion:</b> This study is the first one to define STR polymorphism of Serbian people not only from Serbia but also from other parts of the Balkan Peninsula. The presented genetic data may be useful in further examinations of the genesis and genetic structuring of the present-day Serbian gene pool.
DOI: 10.6084/m9.figshare.7798250
title: Intermediate range order in supercooled water

description: The temperature dependence of the heights of the first and second x-ray diffraction peaks in supercooled water measured down to 244 K are found to display very different behaviours. While the first peak intensity remains essentially constant, the second peak increases strongly with decreasing temperature. In real space this is concomitant with the reduction of the number of non-bonded interstitial molecules between the first and second shells. It is found that although the first O-O shell in supercooled water is unchanged upon supercooling, the variations in intermediate range order are mainly associated with the growth of a predominantly tetrahedral network that is distinctly different from ice-Ih. Moreover, in this temperature regime we find a direct correlation between the height of the second diffraction peak and the intensity changes in the 2nd, 3rd, 4th and 5th peaks in the oxygen-oxygen pair distribution function.
DOI: 10.6084/m9.figshare.7798250.v1
title: Intermediate range order in supercooled water

description: The temperature dependence of the heights of the first and second x-ray diffraction peaks in supercooled water measured down to 244 K are found to display very different behaviours. While the first peak intensity remains essentially constant, the second peak increases strongly with decreasing temperature. In real space this is concomitant with the reduction of the number of non-bonded interstitial molecules between the first and second shells. It is found that although the first O-O shell in supercooled water is unchanged upon supercooling, the variations in intermediate range order are mainly associated with the growth of a predominantly tetrahedral network that is distinctly different from ice-Ih. Moreover, in this temperature regime we find a direct correlation between the height of the second diffraction peak and the intensity changes in the 2nd, 3rd, 4th and 5th peaks in the oxygen-oxygen pair distribution function.
DOI: 10.6084/m9.figshare.7798223
title: Seismic traces recorded by station MZ02

description: Seismic traces in binary MiniSeed format recorded by station MZ02. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 19, 2016 to October 26, 2016.
DOI: 10.6084/m9.figshare.7798202
title: vak-test-data

description: Data used to test the vak library: <br>https://github.com/NickleDave/vak
DOI: 10.6084/m9.figshare.7798172
title: The marine palynology of the Upper Cretaceous Abu Roash ‘A’ Member in the BED 2-3 borehole, Abu Gharadig Basin, Egypt

description: This study presents a high-resolution palynological analysis for the Abu Roash ‘A’ Member in the hydrocarbon-rich Abu Gharadig Basin, North Western Desert, Egypt. Thirty-one rock samples, spanning the upper Coniacian to lower Campanian Abu Roash ‘A’ Member (180 m) from the Badr El Din (BED) 2-3 borehole, were investigated. Highly diverse and well-preserved assemblages of organic-walled dinoflagellate cysts were recorded. A total of 220 species belonging to 123 genera were identified from different levels throughout the studied succession. The marine dinoflagellate cysts represented herein by 160 species allowed three palynological assemblage zones to be recognised. These include the <i>Satyrodinium haumuriense-Isabelidinium belfastense-Odontochitina operculata</i> Assemblage Zone (early Campanian), <i>Dinogymnium acuminatum-Nelsoniella aceras-Odontochitina porifera</i> Assemblage Zone (Santonian), and <i>Cyclonephelium filoreticulatum</i>-<i>Spinidinium echinoideum</i> Assemblage Zone (late Coniacian). Approximately 17 species representing 14 dinoflagellate cyst genera are identified for the first time in the Cretaceous record of Egypt. A comparison to published palynological data from neighbouring areas reveals that several significant events are synchronous throughout the Western Desert, suggesting a common similarity of water masses. Palynofacies and palynomorph analyses of the whole samples led us to define two palynofacies assemblages, which indicate that the Abu Roash ‘A’ Member was deposited during a successive oscillation of sea level from distal inner to middle neritic conditions. A sequence stratigraphic framework assessment was carried out to trace the relative response of the sedimentological organic matter distribution to the changes of sea level. Four third-order transgressive–regressive sequences (SQ2–SQ5) and two incomplete transgressive–regressive sequences (SQ1 and SQ6) are constructed through the Abu Roash ‘A’ Member.
DOI: 10.6084/m9.figshare.7798124
title: R-script: Whole Analysis

description: This is the whole script that is used in the manuscript<br>
DOI: 10.6084/m9.figshare.7798202.v1
title: vak-test-data

description: Data used to test the vak library: <br>https://github.com/NickleDave/vak
DOI: 10.6084/m9.figshare.7798124.v1
title: Whole Analysis

description: This is the whole script that is used in the manuscript<br>
DOI: 10.6084/m9.figshare.7798172.v1
title: The marine palynology of the Upper Cretaceous Abu Roash ‘A’ Member in the BED 2-3 borehole, Abu Gharadig Basin, Egypt

description: This study presents a high-resolution palynological analysis for the Abu Roash ‘A’ Member in the hydrocarbon-rich Abu Gharadig Basin, North Western Desert, Egypt. Thirty-one rock samples, spanning the upper Coniacian to lower Campanian Abu Roash ‘A’ Member (180 m) from the Badr El Din (BED) 2-3 borehole, were investigated. Highly diverse and well-preserved assemblages of organic-walled dinoflagellate cysts were recorded. A total of 220 species belonging to 123 genera were identified from different levels throughout the studied succession. The marine dinoflagellate cysts represented herein by 160 species allowed three palynological assemblage zones to be recognised. These include the <i>Satyrodinium haumuriense-Isabelidinium belfastense-Odontochitina operculata</i> Assemblage Zone (early Campanian), <i>Dinogymnium acuminatum-Nelsoniella aceras-Odontochitina porifera</i> Assemblage Zone (Santonian), and <i>Cyclonephelium filoreticulatum</i>-<i>Spinidinium echinoideum</i> Assemblage Zone (late Coniacian). Approximately 17 species representing 14 dinoflagellate cyst genera are identified for the first time in the Cretaceous record of Egypt. A comparison to published palynological data from neighbouring areas reveals that several significant events are synchronous throughout the Western Desert, suggesting a common similarity of water masses. Palynofacies and palynomorph analyses of the whole samples led us to define two palynofacies assemblages, which indicate that the Abu Roash ‘A’ Member was deposited during a successive oscillation of sea level from distal inner to middle neritic conditions. A sequence stratigraphic framework assessment was carried out to trace the relative response of the sedimentological organic matter distribution to the changes of sea level. Four third-order transgressive–regressive sequences (SQ2–SQ5) and two incomplete transgressive–regressive sequences (SQ1 and SQ6) are constructed through the Abu Roash ‘A’ Member.
DOI: 10.6084/m9.figshare.7798172.v2
title: The marine palynology of the Upper Cretaceous Abu Roash ‘A’ Member in the BED 2-3 borehole, Abu Gharadig Basin, Egypt

description: This study presents a high-resolution palynological analysis for the Abu Roash ‘A’ Member in the hydrocarbon-rich Abu Gharadig Basin, North Western Desert, Egypt. Thirty-one rock samples, spanning the upper Coniacian to lower Campanian Abu Roash ‘A’ Member (180 m) from the Badr El Din (BED) 2-3 borehole, were investigated. Highly diverse and well-preserved assemblages of organic-walled dinoflagellate cysts were recorded. A total of 220 species belonging to 123 genera were identified from different levels throughout the studied succession. The marine dinoflagellate cysts represented herein by 160 species allowed three palynological assemblage zones to be recognised. These include the <i>Satyrodinium haumuriense-Isabelidinium belfastense-Odontochitina operculata</i> Assemblage Zone (early Campanian), <i>Dinogymnium acuminatum-Nelsoniella aceras-Odontochitina porifera</i> Assemblage Zone (Santonian), and <i>Cyclonephelium filoreticulatum</i>-<i>Spinidinium echinoideum</i> Assemblage Zone (late Coniacian). Approximately 17 species representing 14 dinoflagellate cyst genera are identified for the first time in the Cretaceous record of Egypt. A comparison to published palynological data from neighbouring areas reveals that several significant events are synchronous throughout the Western Desert, suggesting a common similarity of water masses. Palynofacies and palynomorph analyses of the whole samples led us to define two palynofacies assemblages, which indicate that the Abu Roash ‘A’ Member was deposited during a successive oscillation of sea level from distal inner to middle neritic conditions. A sequence stratigraphic framework assessment was carried out to trace the relative response of the sedimentological organic matter distribution to the changes of sea level. Four third-order transgressive–regressive sequences (SQ2–SQ5) and two incomplete transgressive–regressive sequences (SQ1 and SQ6) are constructed through the Abu Roash ‘A’ Member.
DOI: 10.6084/m9.figshare.7798121
title: Database_Expecon

description: Brazilian real financial data from 2006 to 2014
DOI: 10.6084/m9.figshare.7798121.v1
title: Database_Expecon

description: Brazilian real financial data from 2006 to 2014
DOI: 10.6084/m9.figshare.7798202.v2
title: vak-test-data

description: Data used to test the vak library: <br>https://github.com/NickleDave/vak
DOI: 10.6084/m9.figshare.7798046
title: A comprehensive analysis of malaria transmission in Brazil

description: Malaria remains a serious public health problem in Brazil despite a significant drop in the number of cases in the past decade. We conduct a comprehensive analysis of malaria transmission in Brazil to highlight the epidemiologically most relevant components that could help tackle the disease. We consider factors impacting on the malaria burden and transmission dynamics including the geographical occurrence of both autochthonous and imported infections, the distribution and abundance of malaria vectors and records of natural mosquito infections with <i>Plasmodium</i>. Our analysis identifies three discrete malaria transmission systems related to the Amazon rainforest, Atlantic rainforest and Brazilian coast, respectively. The Amazonian system accounts for 99% of all malaria cases in the country. It is largely due to autochthonous <i>P. vivax</i> and <i>P. falciparum</i> transmission by mosquitoes of the Nyssorhynchus subgenus, primarily <i>Anopheles darlingi</i>. Whilst <i>P. vivax</i> transmission is widespread, <i>P. falciparum</i> transmission is restricted to hotspot areas mostly in the States of Amazonas and Acre. This system is the major source of <i>P. vivax</i> exportation to the extra-Amazonian regions that are also affected by importation of <i>P. falciparum</i> from Africa. The Atlantic system comprises autochthonous <i>P. vivax</i> transmission typically by the bromeliad-associated mosquitoes <i>An. cruzii</i> and <i>An. bellator</i> of the <i>Kerteszia</i> subgenus. <i>An. cruzii</i> also transmits simian malaria parasites to humans. The third, widespread but geographically fragmented, system is found along the Brazilian coast and comprises <i>P. vivax</i> transmission mainly by <i>An. aquasalis</i>. We conclude that these geographically and biologically distinct malaria transmission systems require specific strategies for effective disease control.
DOI: 10.6084/m9.figshare.7797926
title: Missing in action: possible effects of water recovery on stream and river flows in the Murray–Darling Basin, Australia

description: We use published water balance data from irrigated cropping to show that water entitlements acquired for environmental purposes through water infrastructure subsidies in the Murray–Darling Basin, Australia, have resulted in smaller increases in net stream and river flows than is estimated by the Australian Government, and may even have reduced net stream and river flows. Two key policy implications arising from our results are: (1) subsidies to improve irrigation efficiency so as to increase stream and river flows must employ water accounting so that the effects on return flows are known and the volume of water extracted for irrigation is adjusted to achieve desired stream and river flows; and (2) <i>if</i> the net increases in stream and river flows in the MDB are much less than estimated by the Australian Government, water infrastructure subsidies to increase irrigation efficiency may have compromised the delivery of key objects of the <i>Water Act (2007)</i>.
DOI: 10.6084/m9.figshare.7797941
title: Studies of Assessing Heritage Buildings After Reuse.xlsx

description: This table contains 25 studies, between 2008-2018, that assessed heritage buildings after reuse. It demonstrates their date , authors, number of studied cases, buildings' names, buildings' locations, buildings' date of construction, listing data, buildings' original use and current use, items evaluated, and the followed methods and tools.
DOI: 10.6084/m9.figshare.7798046.v1
title: A comprehensive analysis of malaria transmission in Brazil

description: Malaria remains a serious public health problem in Brazil despite a significant drop in the number of cases in the past decade. We conduct a comprehensive analysis of malaria transmission in Brazil to highlight the epidemiologically most relevant components that could help tackle the disease. We consider factors impacting on the malaria burden and transmission dynamics including the geographical occurrence of both autochthonous and imported infections, the distribution and abundance of malaria vectors and records of natural mosquito infections with <i>Plasmodium</i>. Our analysis identifies three discrete malaria transmission systems related to the Amazon rainforest, Atlantic rainforest and Brazilian coast, respectively. The Amazonian system accounts for 99% of all malaria cases in the country. It is largely due to autochthonous <i>P. vivax</i> and <i>P. falciparum</i> transmission by mosquitoes of the Nyssorhynchus subgenus, primarily <i>Anopheles darlingi</i>. Whilst <i>P. vivax</i> transmission is widespread, <i>P. falciparum</i> transmission is restricted to hotspot areas mostly in the States of Amazonas and Acre. This system is the major source of <i>P. vivax</i> exportation to the extra-Amazonian regions that are also affected by importation of <i>P. falciparum</i> from Africa. The Atlantic system comprises autochthonous <i>P. vivax</i> transmission typically by the bromeliad-associated mosquitoes <i>An. cruzii</i> and <i>An. bellator</i> of the <i>Kerteszia</i> subgenus. <i>An. cruzii</i> also transmits simian malaria parasites to humans. The third, widespread but geographically fragmented, system is found along the Brazilian coast and comprises <i>P. vivax</i> transmission mainly by <i>An. aquasalis</i>. We conclude that these geographically and biologically distinct malaria transmission systems require specific strategies for effective disease control.
DOI: 10.6084/m9.figshare.7797923
title: LC-MS/MS detection of citrus unshiu peel-derived flavonoids in the plasma and brain after oral administration of yokukansankachimpihange in rats

description: 1. Yokukansankachimpihange (YKSCH), a Kampo formulation combining Citrus unshiu peel (CUP) and Pinellia tuber (PT) with yokukansan (YKS), has been recently used to treat the behavioral and psychological symptoms of dementia. Several flavonoids derived from CUP and PT reportedly exhibit psychopharmacological activity, but it remains unclear whether these flavonoids reach the brain after oral administration of YKSCH. 2. In this study, we first measured eight target flavonoids in the plasma and brain in rats orally administered YKSCH. Among these flavonoids, hesperidin, narirutin, nobiletin, and heptamethoxyflavone (HMF) were detected in the plasma, and nobiletin and HMF were detected in the brain. 3. Next, to clarify whether CUP and PT affect the pharmacokinetics of YKS ingredients in YKSCH, the plasma pharmacokinetics of geissoschizine methyl ether (GM) as a representative active ingredient in YKS was examined in rats orally administered YKSCH or YKS. There was no significant difference between the two groups, inferring that the pharmacokinetics of GM may not be affected by the two additional crude drugs. 4. Taken together, this study suggests that the CUP-derived flavonoids nobiletin and HMF may be responsible for the psychopharmacological effects of YKSCH in addition to YKS ingredients.
DOI: 10.6084/m9.figshare.7797923.v1
title: LC-MS/MS detection of citrus unshiu peel-derived flavonoids in the plasma and brain after oral administration of yokukansankachimpihange in rats

description: 1. Yokukansankachimpihange (YKSCH), a Kampo formulation combining Citrus unshiu peel (CUP) and Pinellia tuber (PT) with yokukansan (YKS), has been recently used to treat the behavioral and psychological symptoms of dementia. Several flavonoids derived from CUP and PT reportedly exhibit psychopharmacological activity, but it remains unclear whether these flavonoids reach the brain after oral administration of YKSCH. 2. In this study, we first measured eight target flavonoids in the plasma and brain in rats orally administered YKSCH. Among these flavonoids, hesperidin, narirutin, nobiletin, and heptamethoxyflavone (HMF) were detected in the plasma, and nobiletin and HMF were detected in the brain. 3. Next, to clarify whether CUP and PT affect the pharmacokinetics of YKS ingredients in YKSCH, the plasma pharmacokinetics of geissoschizine methyl ether (GM) as a representative active ingredient in YKS was examined in rats orally administered YKSCH or YKS. There was no significant difference between the two groups, inferring that the pharmacokinetics of GM may not be affected by the two additional crude drugs. 4. Taken together, this study suggests that the CUP-derived flavonoids nobiletin and HMF may be responsible for the psychopharmacological effects of YKSCH in addition to YKS ingredients.
DOI: 10.6084/m9.figshare.7797902
title: Vitamin D insufficiency and deficiency are associated with a higher level of serum uric acid: A systematic review and meta-analysis

description: <b>Introduction/objectives:</b> Several epidemiological studies have suggested that patients with vitamin D insufficiency and deficiency tend to have a higher level of serum uric acid compared with those with adequate vitamin D level although the results were inconsistent across the studies. The current systematic review and meta-analysis was conducted with the aim to summarize all the available data. <b>Methods:</b> A systematic review was conducted using MEDLINE and EMBASE database from inception to May 2018 to identify all studies that compared the level of serum uric acid between individuals with normal vitamin D level and patients with vitamin D insufficiency/deficiency. Eligible studies must be cohort or cross-sectional studies that consisted of two groups of adult participants, one with normal level of vitamin D (vitamin D level &gt;30 ng/ml) and one with vitamin D insufficiency (vitamin D level 20–30 ng/ml) or vitamin D deficiency (vitamin D level of &lt;20 ng/ml). Mean serum uric acid level and standard deviation of participants were extracted from each study to calculate mean difference (MD). Pooled MD was then calculated by combining MDs of each study using random-effects model. <b>Results:</b> A total of seven cross-sectional studies were eligible for the meta-analyses. Individuals with normal vitamin D level had a significantly lower serum uric acid level than patients with vitamin D insufficiency with the pooled MD of –0.33 mg/dl (95%CI, –0.61, –0.04), and also had a significantly lower serum uric acid level than patients with vitamin D deficiency with the pooled MD of –0.45 mg/dl (95%CI, –0.82, –0.08). The statistical heterogeneity of these meta-analyses was high with the <i>I</i><sup>2</sup> of 78% and 89%, respectively. Funnel plots of both meta-analyses were fairly symmetric and did not provide a suggestive evidence for the presence of publication bias. <b>Conclusion:</b> Both patients with vitamin D insufficiency and patients with vitamin D deficiency had a significantly higher level of serum uric acid compared with individuals with normal vitamin D level.
DOI: 10.6084/m9.figshare.7797917
title: Seismic traces recorded by station MZ01

description: Seismic traces in binary MiniSeed format recorded by the station MZ01. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Velocimetric data are available from September 19, 2016 to October 14, 2016, whereas the accelerometric data are available up to November 25, 2016.