cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.cn8mk
title: Data from: Early life experience drives short-term acclimation of metabolic and osmoregulatory traits in the leaf-eared mouse

description: We studied the putative effect of early experience on the physiological
 flexibility of metabolic and osmoregulatory traits in the leaf-eared mouse
 Phyllotis darwini, an altricial rodent inhabiting seasonal mediterranean
 environments. Adult individuals were collected in central Chile and
 maintained in breeding pairs. Pups were isolated after weaning and
 acclimated to different temperature (cold or warm) and water availability
 (unrestricted and restricted) until adulthood. Subsequently, individuals
 were re-acclimated to the opposite treatment. Rodents reared in warm and
 subjected to water restriction had lower basal metabolic rate (BMR), lower
 total evaporative water loss (TEWL), and body mass (Mb) compared to those
 developing in the cold treatment; nevertheless, individuals subjected to
 warm temperatures had greater relative medullary thickness (RMT) and urine
 concentrating ability (UCA). Cold-reared rodents re-acclimated to warm
 conditions exhibited physiological flexibility of metabolic traits;
 however, their osmoregulatory attributes did not vary. Conversely,
 warm-reared rodents re-acclimated to cold had reduced RMT and UCA, but the
 metabolic traits of these individuals did not change; these results
 suggest a trade-off between metabolic performance and renal capabilities
 that might hinder physiological acclimation. Our results support the
 hypothesis of ontogenetic dependence of short-term acclimation in
 osmoregulatory and metabolic traits in Phyllotis darwini.
description: Cavieres et al JEB
 2017
DOI: 10.5061/dryad.6ph62
title: Data from: Experimental evolution of slowed cognitive aging in Drosophila melanogaster

description: Reproductive output and cognitive performance decline in parallel during
 aging, but it is unknown whether this reflects a shared genetic
 architecture or merely the declining force of natural selection acting
 independently on both traits. We used experimental evolution in Drosophila
 melanogaster to test for the presence of genetic variation for slowed
 cognitive aging, and assess its independence from that responsible for
 other traits’ decline with age. Replicate experimental populations
 experienced either joint selection on learning and reproduction at old age
 (Old+Learning), selection on late-life reproduction alone (Old), or a
 standard two-week culture regime (Young). Within 20 generations, the
 Old+Learning populations evolved a slower decline in learning with age
 than both the Old and Young populations, revealing genetic variation for
 cognitive aging. We found little evidence for a genetic correlation
 between cognitive and demographic aging: although the Old+Learning
 populations tended to show higher late-life fecundity than Old
 populations, they did not live longer. Likewise, selection for late
 reproduction alone did not result in improved late-life learning. Our
 results demonstrate that Drosophila harbor genetic variation for cognitive
 aging that is largely independent from genetic variation for demographic
 aging and suggest that these two aspects of aging may not necessarily
 follow the same trajectories.
description: Manuscript
 data
DOI: 10.5061/dryad.21cj2vp
title: Data from: The impact of hurricanes Irma and Maria on the forest ecosystems of Saba and St. Eustatius, northern Caribbean

description: In September 2017, Irma became the first recorded category 5 hurricane to
 hit the Caribbean Windward Islands. The second category 5, Maria, followed
 two weeks later. In November 2017, we assessed the structural impact of
 this disturbance on highly valued Caribbean forest ecosystems. We recorded
 the status of 935 tree stems on Saba and St. Eustatius in stands at
 different elevations. Tree damage was substantial on both islands, with
 93% of stems being defoliated, 84% having lost primary and/or secondary
 branches and 36% having structural stem damage. Average tree mortality was
 18%, with mortality being nearly twice as high on St. Eustatius than on
 Saba. Surprisingly, we found that neither individual stem size nor
 community size distributions mediated the forests’ response to the
 hurricanes. Our results show that these hurricanes comprised a
 density-independent disturbance, which may become more common as the
 frequency of strong hurricanes is projected to increase.
description: Eppinga and Pucko
 DatasetExcel file containing
 the results of a post-hurricane tree survey on Saba and St. Eustatius. A
 description of the data is provided in the accompanying readme
 document.
DOI: 10.5061/dryad.gv062gh
title: Data from: Evolution of dispersal syndrome and its corresponding metabolomic changes

description: Dispersal is one of the strategies for organisms to deal with climate
 change and habitat degradation. Therefore, investigating the effects of
 dispersal evolution on natural populations is of considerable interest to
 ecologists and conservation biologists. Although it is known that
 dispersal itself can evolve due to selection, the behavioral, life-history
 and metabolic consequences of dispersal evolution are not well understood.
 Here we explore these issues by subjecting four outbred laboratory
 populations of Drosophila melanogaster to selection for increased
 dispersal. The dispersal-selected populations had similar values of body
 size, fecundity and longevity as the non-selected lines (controls), but
 evolved significantly greater locomotor activity, exploratory tendency,
 and aggression. Untargeted metabolomic fingerprinting through NMR
 spectroscopy suggested that the selected flies evolved elevated cellular
 respiration characterized by greater amounts of glucose, AMP and NAD.
 Concurrent evolution of higher level of Octopamine and other
 neurotransmitters indicate a possible mechanism for the behavioural
 changes in the selected lines. We discuss the generalizability of our
 findings in the context of observations from natural populations. To the
 best of our knowledge, this is the first report of the evolution of
 metabolome due to selection for dispersal and its connection to dispersal
 syndrome evolution.
description: Tung et
 al_Evolution_2018_DryadDataThis .xlsx file has 9
 worksheets. The name of each worksheet describes the kind of data that is
 in it. These are: 1. Activity data_6h_without food 2. Activity
 data_6h_with food 3. Activity data_24h_with food 4. Exploration data 5.
 Aggression data 6. Dry weight data 7. Fecundity data 8. Longevity data 9.
 Metabolites VB refers to the dispersal selected populations, while VBC
 refers to the corresponding ancestry-matched controls. Thus, VB1 and VBC1
 are related to each other by ancestry, were assayed together, and
 therefore treated as blocks in the analysis.
DOI: 10.5061/dryad.61622
title: Data from: Population genetic structure and connectivity of deep-sea stony corals (Order Scleractinia) in the New Zealand region: implications for the conservation and management of Vulnerable Marine Ecosystems

description: Deep-sea stony corals, which can be fragile, long-lived, late to mature
 and habitat-forming, are defined as vulnerable marine ecosystem indicator
 taxa. Under United Nations resolutions these corals require protection
 from human disturbance such as fishing. To better understand the
 vulnerability of stony corals (Goniocorella dumosa, Madrepora oculata,
 Solenosmilia variabilis) to disturbance within the New Zealand region, and
 to guide marine protected area design, genetic structure and connectivity
 were determined using microsatellite loci and DNA sequencing. Analyses
 compared population genetic differentiation between two biogeographic
 provinces, amongst three sub-regions (north-central-south), and amongst
 geomorphic features. Extensive population genetic differentiation was
 revealed by microsatellite variation, whilst DNA sequencing revealed very
 little differentiation. For G. dumosa, genetic differentiation existed
 amongst regions and geomorphic features, but not between provinces. For M.
 oculata, only a north-central-south regional structure was observed. For
 S. variabilis, genetic differentiation was observed between provinces,
 amongst regions and amongst geomorphic features. Populations on the
 Kermadec Ridge were genetically different from Chatham Rise populations in
 all three species. A significant isolation-by-depth pattern was observed
 for both marker types in G. dumosa, and also in ITS of M. oculata. An
 isolation-by-distance pattern was revealed for microsatellite variation in
 S. variabilis. Medium to high levels of self-recruitment were detected in
 all geomorphic populations, and rates and routes of genetic connectivity
 were species-specific. These patterns of population genetic structure and
 connectivity at a range of spatial scales indicate that flexible spatial
 management approaches are required for the conservation of deep-sea corals
 around New Zealand.
description: Data for genetic
 analyses of deep-sea stony coralsIn this file, it
 contains the information of sampling information and data for genetic
 analyses (sequences and microsatellite) of Goniocorella dumosa, Madrepora
 oculata, Solenosmilia variabilisdata for
 submission.rar
DOI: 10.5061/dryad.m04r4b5
title: Data from: Pleistocene origins of chorusing diversity in Mediterranean bush-cricket populations (Ephippiger diurnus)

description: We studied the Pleistocene diversification of a relatively endemic
 Mediterranean insect (Ephippiger diurnus ; Orthoptera: Tettigoniidae) to
 understand how species with restricted range may nonetheless exhibit the
 complex phylogeography normally associated with broad distribution. A
 time-calibrated molecular phylogeny based on two mitochondrial genes
 showed that E. diurnus diverged into two major clades, distinguished
 largely be male song, before or early during the Pleistocene. Several
 subclades also diverged before the most recent glacial period. Data from
 20 microsatellite loci indicated higher genetic diversity in populations
 along the Mediterranean coast in France, consistent with the hypothesis
 that glacial refuges were located there. ‘Isolation by distance’ accounts
 for much genetic differentiation between populations, but some adjacent
 populations are highly differentiated. A Bayesian approach defined
 genetically distinct clusters and assigned individuals to their most
 probable cluster. Clusters corresponded to clades in the phylogenetic
 tree, and we used cluster assignments to estimate inter-clade gene flow in
 areas of potential secondary contact. Gene flow is negligible in potential
 contact areas in the Pyrenees, but a narrow hybrid zone featuring a steep
 cline exists on the coast. This hybrid zone suggests that the major clades
 represent distinct species that diverged within a restricted area during
 the Pleistocene.
description: Microsatellite data for
 24 Ephippiger diurnus populationsEphippiger_Alland2017_genepop
 DRYAD.txt
DOI: 10.6084/m9.figshare.31152334
title: Mod p Selmer ranks

description: Data associated to the paper "Computing Selmer groups associated to mod p Galois representations". Data includes the ranks of mod 2 Selmer groups over the rationals and the five Euclidean imaginary quadratic fields, and ranks of mod 3 Selmer groups over the rationals.
DOI: 10.6084/m9.figshare.31152334.v1
title: Mod p Selmer ranks

description: Data associated to the paper "Computing Selmer groups associated to mod p Galois representations". Data includes the ranks of mod 2 Selmer groups over the rationals and the five Euclidean imaginary quadratic fields, and ranks of mod 3 Selmer groups over the rationals.
DOI: 10.5061/dryad.83vj2
title: Data from: Migration and dispersal may drive to high genetic variation and significant genetic mixing: the case of two agriculturally important, continental hoverflies (Episyrphus balteatus and Sphaerophoria scripta)

description: Population structure of pests and beneficial species is an important issue
 when designing management strategies to optimize ecosystem services. In
 this study, we investigated for the first time the population structure at
 a continental scale of two migratory species of hoverflies providing both
 pest regulation and pollination services [Episyrphus balteatus and
 Sphaerophoria scripta (Diptera: Syrphidae)]. To achieve this objective, we
 used two sets of 12 species-specific microsatellite markers on a
 large-scale sampling from all over Europe. Our findings showed a high
 level of genetic mixing resulting in a lack of genetic differentiation at
 a continental scale and a great genetic diversity in the two species. All
 the pairwise FST values between European localities were less 0.05 in the
 two species. These low values reflect a large-scale genetic mixing
 probably caused by the existence of frequent migratory movements in the
 two species. Mantel tests revealed isolation-by-distance pattern on the
 East–West axis, but not on the North–South axis. This
 isolation-by-distance pattern confirms the existence of North–South
 migratory movements in both directions and suggests an important step by
 step dispersal. Population features shown by this study are common in
 invasive species and pests, but are not often observed in beneficial
 species. They reflect great colonization abilities and a high adaptive
 potential when dealing with a changing environment. Our results highlight
 the two studied species as particularly interesting beneficial insects for
 pollination and pest predation in the current context of global change.
description: Genotypes_dryadGenotypes of E.balteatus and S.scripta samples on 12 microsatellites markers. There are also some information on the place were the individuals are from : locality, longitude and latitude. Geneotypes were determined on the software GENEMAPPER® 4.0 (AB-life technologies), after PCR and Sanger sequencing of the microsatellite sequences.
DOI: 10.5061/dryad.7b56k
title: Data from: Interspecific crossing and genetic mapping reveal intrinsic genomic incompatibility between two Senecio species that form a hybrid zone on Mount Etna, Sicily

description: Studies of hybridizing species can reveal much about the genetic basis and
 maintenance of species divergence in the face of gene flow. Here we report
 a genetic segregation and linkage analysis conducted on F2 progeny of a
 reciprocal cross between Senecio aethnensis and S. chrysanthemifolius that
 form a hybrid zone on Mount Etna, Sicily, aimed at determining the genetic
 basis of intrinsic hybrid barriers between them. Significant transmission
 ratio distortion (TRD) was detected at 34 (~27%) of 127 marker loci
 located in nine distinct clusters across seven of the ten linkage groups
 detected, indicating genomic incompatibility between the species. TRD at
 these loci could not be attributed entirely to post-zygotic selective loss
 of F2 individuals that failed to germinate or flower (16.7%). At four loci
 tests indicated that pre-zygotic events, such as meiotic drive in F1
 parents or gametophytic selection, contributed to TRD. Additional tests
 revealed that cytonuclear incompatibility contributed to TRD at five loci,
 Bateson–Dobzhansky–Muller (BDM) incompatibilities involving epistatic
 interactions between loci contributed to TRD at four loci, and
 underdominance (heterozygote disadvantage) was a possible cause of TRD at
 one locus. Major chromosomal rearrangements were probably not a cause of
 interspecific incompatibility at the scale that could be examined with
 current map marker density. Intrinsic genomic incompatibility between S.
 aethnensis and S. chrysanthemifolius revealed by TRD across multiple
 genomic regions in early-generation hybrids is likely to impact the
 genetic structure of the natural hybrid zone on Mount Etna by limiting
 introgression and promoting divergence across the genome.
description: F2ACcodominantgenotypesCodominant marker genotypes for an F2 Senecio aethnensis x S. chrysanthemifolius mapping familyF2ACdominantgenotypesDominant marker genotypes for an F2 S. aethnensis x S. chrysanthemifolius mapping familyF2ACgenotypesnotesNotes explaining the F2ACcodominantgenotypes and F2ACdominantgenotypes data filesF2ACjoinmapJoinmap formatted input file for an F2 S. aethnensis x S. chrysanthemifolius mapping familyF2ACjoinmapnotesNotes for F2ACjoinmap data fileF2ACmapGenetic linkage map for an F2 S. aethnensis x S. chrysanthemifolius mapping familyF2ACmapnotesNotes for F2ACmap data file
DOI: 10.5061/dryad.30kt0
title: Data from: Early life history of deep-water gorgonian corals may limit their abundance

description: Deep-water gorgonian corals are long-lived organisms found worldwide off
 continental margins and seamounts, usually occurring at depths of
 ~200–1,000 m. Most corals undergo sexual reproduction by releasing a
 planktonic larval stage that disperses; however, recruitment rates and the
 environmental and biological factors influencing recruitment in deep-sea
 species are poorly known. Here, we present results from a 4-year field
 experiment conducted in the Gulf of Maine (northwest Atlantic) at depths
 of more than 650 m that document recruitment for 2 species of deep-water
 gorgonian corals, Primnoa resedaeformis and Paragorgia arborea. The
 abundance of P. resedaeformis recruits was high, and influenced by the
 structural complexity of the recipient habitat, but very few recruits of
 P. arborea were found. We suggest that divergent reproductive modes (P.
 resedaeformis as a broadcast spawner and P. arborea as a brooder) may
 explain this pattern. Despite the high recruitment of P. resedaeformis,
 severe mortality early on in the benthic stage of this species may limit
 the abundance of adult colonies. Most recruits of this species (more than
 80%) were at the primary polyp stage, and less than 1% of recruits were at
 stage of 4 polyps or more. We propose that biological disturbance,
 possibly by the presence of suspension-feeding brittle stars, and limited
 food supply in the deep sea may cause this mortality. Our findings
 reinforce the vulnerability of these corals to anthropogenic disturbances,
 such as trawling with mobile gear, and the importance of incorporating
 knowledge on processes during the early life history stages in
 conservation decisions.
description: Data from: Early life
 history of deep-water gorgonian corals may limit their abundance. A
 Canadian Healthy Oceans Network Marine Biodiversity Project,
 MB-17Deep-water gorgonian
 coral recruitment data from a 4-year field experiment in the Northeast
 Channel Coral Conservation Area (Gulf of Maine, northwest
 Atlantic).Data_Lacharite&Metaxas2013.csv
DOI: 10.25612/837.8kdjndnwewwq
title: Social Vulnerability Index

description: CDC's Social Vulnerability Index at the census tract level for 2000, 2010, 2014, 2016, 2018, and 2020.
DOI: 10.5061/dryad.r8d1m
title: Data from: Biogeography of a plant invasion: genetic variation and plasticity in latitudinal clines for traits related to herbivory

description: The juxtaposition of plant-species invasions with latitudinal gradients in
 herbivore pressure is an important yet mostly unexplored issue in invasion
 biology. Latitudinal clines in defense and palatability to herbivores are
 expected to exist in native plant species but the evolution of these
 clines may lag behind for invasive plant species resulting in non-parallel
 latitudinal clines that may impact invasion success. Our study focused on
 a native and European invasive lineages of the common reed Phragmites
 australis in North America. Using native and invasive genotypes of P.
 australis collected across a 17° latitudinal range, we performed
 experiments in replicate northern and southern common gardens to
 investigate whether these two lineages exhibited different genetically
 based latitudinal clines in defenses, nutritional condition and
 palatability to their herbivores, the aphid Hyalopterus pruni and the fall
 armyworm Spodoptera frugiperda. We also tested whether invasive genotypes
 are more phenotypically plastic than native genotypes and whether
 plasticity varies with latitude. Although invasive genotypes did not
 exhibit higher defense levels (leaf toughness, phenolics, % carbon), they
 were considerably less palatable to their herbivores than native
 genotypes. Genetic-based latitudinal clines were evident for both native
 and invasive P. australis and for all defenses, nutrients and at least one
 palatability trait for each herbivore. In 36% of the cases where clines
 were evident, they were non-parallel between the two lineages. These data
 suggest that clines in the invasive genotypes of P. australis evolved
 within the past ~100 years. Moreover, our study showed that the occurrence
 and direction of latitudinal clines in plant traits were commonly
 dependent on where the study was conducted (north or south), indicating
 strong phenotypic plasticity in these genetic-based clines. Finally,
 traits for invasive genotypes of P. australis were 2.5 times more plastic
 than traits for native genotypes. Interestingly, plasticity for native but
 not invasive genotypes was strongly dependent on latitude of origin. Such
 spatial heterogeneity within and between the native and invasive lineages
 of P. australis with respect to their interactions with herbivores can
 generate substantial spatial variability in biotic resistance that can
 have important implications for the establishment and spread of invasive
 genotypes and species.
description: Bhattarai et al. raw
 data
DOI: 10.5061/dryad.59
title: Data from: Geographic structure in a widespread plant–mycorrhizal interaction: pines and false truffles

description: Mutualistic interactions are likely to exhibit a strong geographic mosaic
 in their coevolutionary dynamics, but the structure of geographic
 variation in these interactions is much more poorly characterized than in
 host–parasite interactions. We used a cross-inoculation experiment to
 characterize the scales and patterns at which geographic structure has
 evolved in an interaction between three pine species and one
 ectomycorrhizal fungus species along the west coast of North America. We
 found substantial and contrasting patterns of geographic interaction
 structure for the plants and fungi. The fungi exhibited a clinal pattern
 of local adaptation to their host plants across the geographic range of
 three coastal pines. In contrast, plant growth parameters were unaffected
 by fungal variation, but varied among plant populations and species. Both
 plant and fungal performance measures varied strongly with latitude. This
 set of results indicates that in such widespread species interactions,
 interacting species may evolve asymmetrically in a geographic mosaic
 because of differing evolutionary responses to clinally varying biotic and
 abiotic factors.
description: Pinus-Rhizopogon
 Cross-Inoculation ExperimentHoeksemaThompson_07.XLS