cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6898243
title: Unlabeled Empatica E4 Wristband Data (UE4W) Dataset

description: The UE4W dataset was recorded over a period of approximately two weeks by a singe adult male. We found that keeping accurate records and labeling were impractical so it was archived. However, recent advances in representation and unsupervised learning have led us to look at it again. The dataset contains over 250 hours of recordings using an Empatica E4 wristband. In general the longer files are daytime recordings, the shorter ones are nighttime. The tags indicate the beginning and end of an event change (E.g., getting up to go for walk) however the lack of a tag is not a meaningful indicator. A Jupyter notebook is provided which processes each file into a Pandas dataframe and generates a windowed plot of the total acceleration. Additional and updated code may be found on our IMICS lab github. Several reference screenshots from the Empatica Connect Website are also included.
DOI: 10.6084/m9.figshare.20365563
title: Phylotranscriptomic analyses reveal a deep gene tree discordance of Camellia (Theaceae) and the possible ancestral origin of cultivated C. oleifera

description: An increasing use of genomic data has forced molecular phylogeneticists to confront gene tree discordance. Multiple factors can result in incongruence among genes, such as introgression, incomplete lineage sorting (ILS), gene duplication or loss, and the influence of incomplete sampling through assembly errors and filtering criteria. <em>Camellia</em>, the largest genus in Theaceae, has controversial taxonomy and systematics due in part to a complex evolutionary history including interspecific gene flow. Here, we used 60 transcriptomes of 55 species, which represented 15 sections of <em>Camellia</em> to investigate its phylogeny and the possible causes of gene tree discordance. We conducted gene tree discordance analysis based on 1,617 orthologous low-copy nuclear genes, primarily using coalescent species trees and polytomy tests for hard vs. soft conflict. In order to assess the impact of selective pressure on phylogenetic topology reconstruction, we also performed a selective pressure analysis. Our results detected different levels of gene tree discordance in the backbone of <em>Camellia</em>, and recovered rapid diversification as one of the possible causes of gene discordance. Furthermore, we confirmed that none of the currently proposed sections from <em>Camellia</em> was monophyletic and discuss the possible ancestral origin of cultivated <em>C. oleifera</em>. Combing all orthologous genes could provide an improved phylogenetic resolution and minimize the incongruence between gene trees and species tree of <em>Camellia</em>.
DOI: 10.6084/m9.figshare.20365563.v1
title: Phylotranscriptomic analyses reveal a deep gene tree discordance of Camellia (Theaceae) and the possible ancestral origin of cultivated C. oleifera

description: An increasing use of genomic data has forced molecular phylogeneticists to confront gene tree discordance. Multiple factors can result in incongruence among genes, such as introgression, incomplete lineage sorting (ILS), gene duplication or loss, and the influence of incomplete sampling through assembly errors and filtering criteria. <em>Camellia</em>, the largest genus in Theaceae, has controversial taxonomy and systematics due in part to a complex evolutionary history including interspecific gene flow. Here, we used 60 transcriptomes of 55 species, which represented 15 sections of <em>Camellia</em> to investigate its phylogeny and the possible causes of gene tree discordance. We conducted gene tree discordance analysis based on 1,617 orthologous low-copy nuclear genes, primarily using coalescent species trees and polytomy tests for hard vs. soft conflict. In order to assess the impact of selective pressure on phylogenetic topology reconstruction, we also performed a selective pressure analysis. Our results detected different levels of gene tree discordance in the backbone of <em>Camellia</em>, and recovered rapid diversification as one of the possible causes of gene discordance. Furthermore, we confirmed that none of the currently proposed sections from <em>Camellia</em> was monophyletic and discuss the possible ancestral origin of cultivated <em>C. oleifera</em>. Combing all orthologous genes could provide an improved phylogenetic resolution and minimize the incongruence between gene trees and species tree of <em>Camellia</em>.
DOI: 10.6084/m9.figshare.19077440.v1
title: data of Figure 4,5,6 and 8 in Kinematics analysis and Calibration of a 6-DOF light load collaborative robot

description: data of Figure 4,5,6 and 8 in Kinematics analysis and Calibration of a 6-DOF light load collaborative robot
DOI: 10.6084/m9.figshare.19077440.v2
title: data of Figure 4,5,6 and 8 in Kinematics analysis and Calibration of a 6-DOF light load collaborative robot

description: data of Figure 4,5,6 and 8 in Kinematics analysis and Calibration of a 6-DOF light load collaborative robot
DOI: 10.6084/m9.figshare.20365686
title: SC22'SSSP'processed LOGS

description: The data logs of Graph500 SSSP on the new Sunway supercomputer(without sensitive data).
DOI: 10.6084/m9.figshare.20365686.v1
title: SC22'SSSP'processed LOGS

description: The data logs of Graph500 SSSP on the new Sunway supercomputer(without sensitive data).
DOI: 10.34740/kaggle/dsv/3982604
title: Russian Invasion of Ukraine
DOI: 10.6084/m9.figshare.20366130
title: Supplementary Material for: Evaluation of Appendicular Muscle Mass in Sarcopenia in Older Adults Using Ultrasonography: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> The measurement of appendicular muscle mass is essential for the diagnosis of sarcopenia. Ultrasonography is an accurate and convenient method used to evaluate muscle mass. <b><i>Objective:</i></b> The aim of the study was to evaluate the diagnostic value of ultrasonography for appendicular muscle mass in sarcopenia in older adults and find out proper ultrasound parameters. <b><i>Methods:</i></b> Medline, Embase, Cochrane, and Web of Science databases were searched for relevant articles. Published studies on the validity and/or reliability of ultrasonography for quantifying muscle mass of the limbs in sarcopenia in the older population were included. A systematic review was conducted based on specific muscles and reference methods. A meta-analysis was conducted to assess the validity and reliability of the ultrasonography. <b><i>Results:</i></b> Forty articles were included in this review. There were nine, nine, nine, and four studies included in the qualitative synthesis for a diagnostic test, correlation coefficient, intra-class reliability, and inter-class reliability, respectively. The diagnostic value of rectus femoris (RF) or gastrocnemius (GM) thickness on ultrasonography for sarcopenia or low muscle mass was moderate (the area under summary receiver operating characteristic curve [SROC] = 0.76, 95% confidence interval [CI]: 0.72–0.79, SROC = 0.80, 95% CI: 0.76–0.83, respectively). The pooled correlation between muscle mass on dual-energy X-ray (DXA) or bioelectrical impedance analysis (BIA) and muscle thickness (MT) on ultrasound was moderate (<i>r</i> = 0.56, 95% CI: 0.49–0.62). There was a low-to-moderate correlation between muscle mass on DXA or BIA and cross-sectional area (CSA) on ultrasound (<i>r</i> = 0.267–0.584). The correlation was high to very high between muscle mass from DXA and the ultrasound-predicted formula (<i>r</i> = 0.85–0.963). The CSA from ultrasound had a high or very high correlation with that from computed tomography or magnetic resonance imaging (<i>r</i> = 0.826, intra (inter)-correlation coefficient [ICC] = 0.998–0.999). The respective meta-analyses showed good inter-rater and intra-rater reliabilities (ICC &gt; 0.9). <b><i>Conclusion:</i></b> Ultrasonography is a reliable and valid diagnostic method for the quantitative assessment of appendicular muscle mass in sarcopenia in older people. The thickness and CSA of the RF or GM seem to be proper ultrasound parameters to predict muscle mass in sarcopenia. Multicenter studies with large samples and the application of new ultrasonic techniques will be the future research directions.
DOI: 10.34740/kaggle/dsv/3982642
title: 2008 - 2017 Athens City Center, Copernicus GeoData
DOI: 10.5281/zenodo.6812318
title: Trojan Detection Challenge Datasets

description: This contains the datasets for the Trojan Detection Challenge NeurIPS 2022 competition. To learn more, please see the competition website. (Note: This version of the dataset has been deprecated. It contains a loophole that affects the validation set for the detection track, which the new version fixes.)
DOI: 10.5281/zenodo.5634957
title: Original data for cover vegetaion in pear orchard

description: This datasheet is for the paper entitled "<strong>Ground cover vegetation promotes biological control and yield in pear orchardsGround</strong><strong> cover vegetation promotes biological control and yield in pear orchards</strong>".
DOI: 10.5281/zenodo.5634956
title: Original data for cover vegetaion in pear orchard

description: This datasheet is for the paper entitled "<strong>Ground cover vegetation promotes biological control and yield in pear orchardsGround</strong><strong> cover vegetation promotes biological control and yield in pear orchards</strong>".
DOI: 10.5281/zenodo.6804719
title: R code for the "Plant genetic diversity affects multiple trophic levels and trophic interactions"

description: R code for the "Plant genetic diversity affects multiple trophic levels and trophic interactions"
DOI: 10.5281/zenodo.6804718
title: R code for the "Plant genetic diversity affects multiple trophic levels and trophic interactions"

description: R code for the "Plant genetic diversity affects multiple trophic levels and trophic interactions"
DOI: 10.5517/ccdc.csd.cc29dscw
title: CCDC 2127448: Experimental Crystal Structure Determination

description: Related Article: Lianghao Li, Qitao Shen, Chuanliu Yin, Xiangyun Zheng, Tianshuo Zhong, Chuanming Yu|2022|Tetrahedron Lett.|103|153981|doi:10.1016/j.tetlet.2022.153981
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bp36c
title: CCDC 2165232: Experimental Crystal Structure Determination

description: Related Article: Xiaoyu Liu, Kun He, Junhong Pan, Weikun Zeng, Jun Lin, Yi Jin|2022|Tetrahedron Lett.|103|153979|doi:10.1016/j.tetlet.2022.153979
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bwcj4
title: CCDC 2171256: Experimental Crystal Structure Determination

description: Related Article: Yuichiro Kawamoto, Toyoharu Kobayashi, Hisanaka Ito|2022|Tetrahedron Lett.|103|153975|doi:10.1016/j.tetlet.2022.153975
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6899223
title: Trojan Detection Challenge Datasets (New Detection Track Validation Set)

description: This upload contains the new version of the detection track validation set for the Trojan Detection Challenge NeurIPS 2022 competition. This is meant for participants in the detection who do not want to redownload the full dataset. For the full dataset including data for other tracks, see https://zenodo.org/record/6894041.
DOI: 10.5281/zenodo.6899222
title: Trojan Detection Challenge Datasets (New Detection Track Validation Set)

description: This upload contains the new version of the detection track validation set for the Trojan Detection Challenge NeurIPS 2022 competition. This is meant for participants in the detection who do not want to redownload the full dataset. For the full dataset including data for other tracks, see https://zenodo.org/record/6894041.
DOI: 10.6084/m9.figshare.20366712
title: PRISMA_2020_checklist

description: PRISMA-2020 reporting guidelies represented the cheklist for the manuscript entitled "<em><strong>Prevalence of COVID-19 vaccine hesitancy in students: A global systematic review</strong></em>"
DOI: 10.17632/d2ynpjwwsp.1
title: Weight Loss During Neoadjuvant Therapy is Associated with Poor Response among the Patients with Gastrointestinal Cancer: A Propensity Score Matching Analysis

description: This work was performed with gastrointestinal cancer patients who underwent neoadjuvant therapy from January 2015 to July 2020 at Guangxi Medical University Cancer Hospital.  These data are provided for further analysis and research and are not available for commercial use. Please contact us for more requirements.
DOI: 10.17632/42dykjmxpk.1
title: LINF_300026600

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/tmm5vnsnhx.1
title: LINF_300027100

description: E3 ubiquitin-protein ligase | RBR1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/bnmzs3xrkf.1
title: LINF_300027500

description: DnaJ domain-containing protein | JDP59 | J59 | putative endosomal trafficking protein RME-8
Leishmania infantum (strain JPCM5)
DOI: 10.17632/t8hck2fnjj.1
title: LINF_300028000

description: phospholipid-translocating P-type ATPase (flippase)
Leishmania infantum (strain JPCM5)
DOI: 10.17632/wxzknky8cz.1
title: LINF_300028300

description: ATP-dependent DEAD/H DNA helicase | RECQa
Leishmania infantum (strain JPCM5)
DOI: 10.17632/pp8vgvfcv4.1
title: KSSOLV 2.0: An efficient MATLAB toolbox for solving the Kohn-Sham equations with plane-wave basis set

description: KSSOLV (Kohn-Sham Solver) is a MATLAB toolbox for performing Kohn-Sham density functional theory (DFT) calculations with a plane-wave basis set. KSSOLV 2.0 preserves the design features of the original KSSOLV software to allow users and developers to easily set up a problem and perform ground-state calculations as well as to prototype and test new algorithms. Furthermore, it includes new functionalities such as new iterative diagonalization algorithms, k-point sampling for electron band structures, geometry optimization and advanced algorithms for performing DFT calculations with local, semi-local, and hybrid exchange-correlation functionals. It can be used to study the electronic structures of both molecules and solids. We describe these new capabilities in this work through a few use cases. We also demonstrate the numerical accuracy and computational efficiency of KSSOLV on a variety of examples.
DOI: 10.17632/tfwkmjr49c.3
title: Historical fog climate dataset for carpathian basin countries

description: This data repository contain historical fog climate data set for Hungary and Carpathain basin countries from 1886 to 1919. The dataset was obtained from the yearbooks of the Royal Hungarian Central Institute of Meteorology and Earth Magnetism (RHCIMEM) established in 1870 to investigate the climatic features of Hungary during the time of the Austro-Hungarian Monarchy. 

The yearbooks provide daily meteorological data, recorded 3 times a day at 07:00, 14:00 and 21:00 local time. The yearbooks have recorded dataset on quantitative variables like temperature (Celsius), pressure (mmHg), vapour pressure (mmHg), relative humidity (%), cloudiness (tenth), wind direction (quarter), wind speed (Beaufort number) and precipitation (mm) 

The daily dataset from 1886 to 1919 recorded in the yearbooks was transformed into MS excel tables. The occurrence of fog is denoted by 1 and rest of data (where no fog was detected) is denoted by 0. The recorded data were visually checked and compared with the records in the yearbooks. 

The historical dataset can be used to study the annual and seasonal changes in frequency and duration of fog events in the Carpathian Basin, thus facilitating research in the field of fog climatology and forecast.
DOI: 10.17632/t8rpkc7xnx.1
title: Parallelized discrete exterior calculus for three-dimensional elliptic problems

description: A formulation of elliptic boundary value problems is used to develop the first discrete exterior calculus (DEC) library for massively parallel computations with 3D domains. This can be used for steady-state analysis of any physical process driven by the gradient of a scalar quantity, e.g. temperature, concentration, pressure or electric potential, and is easily extendable to transient analysis. In addition to offering this library to the community, we demonstrate one important benefit from the DEC formulation: effortless introduction of strong heterogeneities and discontinuities. These are typical for real materials, but challenging for widely used domain discretization schemes, such as finite elements. Specifically, we demonstrate the efficiency of the method for calculating the evolution of thermal conductivity of a solid with a growing crack population. Future development of the library will deal with transient problems, and more importantly with processes driven by gradients of vector quantities.
DOI: 10.17632/wyykttthv6.1
title: Data From: How Do Genomic, Mitochondrial, and Morphological Data Contribute to the Linnean 3 Classification of the Porrostomine Net-Winged Beetles (Coleoptera, Lycidae)?

description: Alignment, partition file
DOI: 10.17632/39bhmkddwd.1
title: mood induction and autobiographical memory, social problem solving and verbal fluency 

description: Mood and AMS = 44 participants completed the autobiographical memory test (AMT) and a measure of executive function (letter and category fluency) before and after undergoing a positive or negative mood induction. They also rated their happy and sad moods pre and post MI and completed the Beck Depression Inventory to control for ongoing depression. The variables of interest were proportion of specific memories retrieved in response to positive and negative cues on the AMT, the ratings of mood, and the number of words generated on the fluency tasks. These measures were taken pre and post the MI. We also calculated change scores pre to post MI.  

Mood and SPS = 40 participants completed the means end problem solving task (MEPS) and a measure of executive function (letter and category fluency) before and after undergoing a positive or negative mood induction. They also rated their happy and sad moods pre and post MI and completed the Hospital Anxiety and Depression Scale to control for ongoing depression. The variables of interest were the number of relevant solutions (referred to as means) generated in response to the MEPS scenarios, the rated effectiveness of these means, the ratings of mood, and the number of words generated on the fluency tasks. These measures were taken pre and post the MI. We also calculated change scores pre to post MI.
DOI: 10.17632/fd5pdxtsws.1
title: Reverse subsidy

description: The data to describe the physical characteristics of the residential buildings, including name, age, and other basic information, were obtained from the Chongqing Municipal Commission of Urban-Rural Development (CMCURD).
DOI: 10.17632/6vx4jy4b88.3
title:  Ninjurin1 deletion in neuron-glial antigen 2-positive pericytes prevents microvessel maturation of microvascular formation and delays wound healing

description: These are primary data for the paper entitled Ninjurin1 deletion in neuron-glial antigen 2-positive pericytes prevents microvessel maturation of microvascular formation and delays wound healing.
DOI: 10.17632/r6vzpsbxd8.1
title: PSYCHOLOGICAL FACTORS OF COVID-19 VACCINATION UPTAKE AMONG CITIZENS OF BOSNIA AND HERZEGOVINA: THE APPLICATION OF HEALTH BELIEF MODEL

description: The present study investigated which factors are associated with COVID-19 vaccination uptake, under the framework of HBM. Total of 820 subjects participated in the study. The results suggest that perceived benefits and cues to action are positively related to vaccination acceptance, while the perceived barriers are negatively related to vaccination uptake. Additionally, older individuals, parents and the ones living in urban areas are more likely to take the vaccine. These findings can be utilized by government organizations, health care institutions, campaign managers, doctors, and health advocates, when trying to communicate the messages regarding vaccine.
DOI: 10.17632/5s4pk4rj32.3
title: Distinct Non-Clock-Like Signatures of the Basal Cell Carcinomas from Three Sisters with a Lethal Gorlin-Goltz Syndrome

description: We identified the insertion mutation PTCH1 c.1341dupA (p. L448Tfs*49), which segregated with BCC phenotype and contributed to the death of two in four patients from a Chinese family with GS. Compared with adjacent non-cancerous tissues (ANCT), four second-hit mutations were found in four of the six pairs of BCC from three patients. Of note, somatic genomic alterations in all six BCC samples were mainly clustered into non-clock-like Signature 7 (ultraviolet mutagenesis) and 11 (related to certain alkylating agents). Both RNA-seq and quantitative RT-PCR confirmed that the mRNA levels of PTCH1 and its effector GLI1 were markedly upregulated in six pairs of BCC samples versus ANCT.
Supplementary Information:
Additional file 1. Somatic single nucleotide variant (SNV) sites in whole exome sequencing of matched BCC and ANCT.
Additional file 2. Somatic loss of heterozygosity (LOH) in whole exome sequencing of matched BCC and ANCT.
DOI: 10.17632/gdygjc3nc4.3
title: Participants' answers on Didactic-Mathematical Knowledge Fractions Test

description: Participants' answers on Didactic-Mathematical Knowledge Fractions Test
Dataset_001 contains participants' answers on the common knowledge aspect
Dataset_002 contains participants' answers to the aspects of extended knowledge and epistemic facet
Dataset_003 contains the answers of the participants on the aspects of interactional, cognitive, and affective facet
Dataset_004 contains the participant's answers to the mediational and ecological facet
DOI: 10.17632/bsvtbvvf4v.1
title: Dataset for: "Migration and City Size: A New Empirical Approach to an Old Question"

description: This is the dataset containing all variables for the analyses in the manuscript titled "Migration and City Size: A New Empirical Approach to an Old Question."  The data are primarily from the 2000 census of population and 2010 American Community Survey 5-year estimates.  Port data is from the NOAA shoreline 1999/2000 survey.  Agricultural land values are from the USDA census of agriculture for 2002 and 2012.  Commuting speed is from DiBartolomeo, Jeffrey (2020), “Data for: Commuting Speed as a Proxy for the Value of Time”, Mendeley Data, V1, doi: 10.17632/k7zymk7cpz.1
DOI: 10.17632/gy7wnrhxnm.1
title: long-term care data（2011-2018）

description: The data is the 4-phase panel data of charls2011-2018 and the 2-phase panel data of 2011 and 2018. The data has been cleaned. The data also includes stata's do-file documents. This data is mainly used to evaluate the impact of long-term care insurance in China on the cognitive function of middle-aged and elderly residents.
DOI: 10.17632/srv2mzr3fc.1
title: Healthcare Professional experiences of making surgical oncology decisions and delivering COVID-19 safe care: a qualitative study

description: This dataset includes the verbatim transcriptions of interviews conducted to explore the experiences of healthcare professionals during COVID-19. it also includes the codebook created by the researches identifying key themes.