cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2wwzg4pb8n
title: Live Imaging of SARS-CoV-2 Infection in Mice Reveals that Neutralizing Antibodies Require Fc Function for Optimal Efficacy by Ullah et al_IMMUNITY-D-21-00378

description: Supplementary videos and raw data set for all the graphs shown in figures the manuscript titled "Live Imaging of SARS-CoV-2 Infection in Mice Reveals that Neutralizing Antibodies Require Fc Function for Optimal Efficacy" by Ullah et al_IMMUNITY-D-21-00378 Supplementary Video Legends: Video S1. Longitudinal Non-invasive Bioluminescence Imaging to Visualize SARS-CoV-2-nLuc Infection and Dissemination in K18-hACE2 Mice, Related to Figure 1. SARS-CoV-2-nLuc challenged mice were imaged daily in dorsal (d) and ventral (v) positions for 6 days using IVIS Spectrum to monitor virus spread in the whole body as well as neuroinvasion. Video S2. Tomographic Reconstruction of Lung Tissue Depicting SARS-CoV-2 Virions in Infected Cells, Related to Figure S2, panels B-D. Virus particles are found within membrane-enclosed exit compartments of two adjacent pulmonary capillary endothelial cells. The movie traverses the reconstructed volume to illustrate the compartments (red arrowheads) then increases in magnification to detail the virions within the compartments. Video S3. Cellular Overview and Tomogram of SARS-CoV-2 Infected Region in Lung Tissue with Alveolar Macrophages, Related to Figure S2, panels B-D. SARS-CoV-2 virions are found in regions containing identifiable immune cells. Movie begins with a large-field montaged overview, highlighting alveolar macrophages (blue), AT2 cells (green), AT1 cells (yellow) and pulmonary blood veins (red). The upper of two blood veins is detailed at higher magnification, showing 3 red blood cells (rbc) and the surrounding capillary endothelium. A region containing portions of two endothelial cells is selected for tomographic reconstruction, showing caveolae at the cell surfaces and localizing SARS-CoV-2 virions within cytoplasmic exit compartments. Video S4. Tomographic Reconstruction of SARS-CoV-2 Infected Brain Tissue Depicting Infected Neurons, Related to Figure S2, panel F. Virus particles are found within neurons, often appearing in linear groups within compartments bordering the edges of neuronal projections. The movie details the distinction between presumptive SARS-CoV-2 virions and typical synaptic neurotransmitter vesicles found in an adjacent synaptic terminal. Video S5. Tomographic Reconstruction of Mouse Testis Depicting SARS-CoV-2 Virions Within Sertoli Cells, Related to Figure S2, panel M. Virus particles are found within membrane-enclosed compartments of Sertoli cells. Additional material and structures coexist with the virions in these compartments, suggesting they may be defined as lysosomes. Presumptive SARS-CoV-2 virions can be discerned from the other structures.
DOI: 10.17632/3r643by58z
title: LINF_330018400

description: guanylate kinase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/75vrr7y43p
title: Nitrogen and carbon isotopes in Finnish (Kilpisjarvi, Kevo) ectomycorrhizal fungi

description: We analyzed %C, %N, δ13C, δ15N, and C: N stoichiometry of 12 species of ectomycorrhizal sporocarps of collected from Betula-dominated stands in northern Finland from 1971 to 1983. These were archived specimens originally collected during fieldwork by Esteri Ohenoja and Katriina Bendiksen from the University of Oulu. We hypothesized that functional attributes of ectomycorrhizal fungi such as hydrophobicity of ectomycorrhizae and weather conditions could influence sporocarp δ13C, δ15N, and C: N. Taxa with hydrophobic ectomycorrhizae were higher in δ15N and increased more in δ13C with increasing nitrogen concentration than taxa with hydrophilic ectomycorrhizae, reflecting the uptake of 13C- and 15N-enriched organic N by hydrophobic taxa. Sporocarp δ13C correlated negatively with average daily precipitation and positively with average temperature and the daily temperature range for the three previous weeks. Sporocarp C/N correlated negatively with average daily precipitation for the three previous weeks but also negatively with the daily temperature range 4-6 weeks prior to collection. Sporocarp δ13C also correlated with site aspect, specifically Southness, with sporocarps from more southern-facing locations somewhat higher in δ13C. Similar patterns in sporocarp C/N and δ13C indicated that fungal growth and C dynamics respond rapidly to plant C supply as modulated by climate conditions. Precipitation and temperature variability appeared to affect plant photosynthesis and ectomycorrhizal carbon dynamics similarly. The attached files are: Appendix Methods-1. docx. This is the file describing isotopic analyses and standards used for quality assurance. Appendix 2-Data for regressions.txt. This is the data file used to run stepwise regression analyses. Appendix 3.xlsx. This shows the stepwise regression used for d13C (carbon isotopes) analysis. Appendix 6.xlsx. This shows the stepwise regression used for d15N (nitrogen isotopes) analysis. Appendix 7.xlsx. This shows the stepwise regression used for the natural log of C/N analysis.
DOI: 10.17632/9n7bryshg3
title: Regulation of GTPase function by autophosphorylation Johnson et al. 

description: See main paper for findings.
DOI: 10.17632/cjyzby7z82
title: A synaptic molecular dependency network in knockdown of autism- and schizophrenia-associated genes revealed by multiplexed imaging by Falkovich et al.

description: The attached dataset consists of measurements of individual (per-synapse) fluorescence intensity integrals of 11 proteins in ~1 million synapses, across 250 wells and 19 treatment groups. The dataset was obtained by combining automatic CellProfiler quantification of images from four experiments (each protein in each experiment normalized by mean intensity of that protein in untreated wells), with rigid manually set threshold levels.
Associated data, including raw and processed images and CellProfiler output with other parameters is available upon request.

Associated with paper: 10.1016/j.celrep.2023.112430 and software: 10.5281/zenodo.7753915
DOI: 10.17632/mc6sk8xt2z
title: Anatomic Mapping of Acral Melanocytic Nevi and Acral Lentiginous Melanomas Among Taiwanese Patients: A retrospective cohort study

description: The early diagnosis of acral lentiginous melanoma (ALM) contributes to clinical outcomes since ALM can be mistaken for acral melanocytic nevus (AMN). ALM occurrence is reported to correlate with stress-bearing areas, which may assist in differential diagnoses.
In our study, we evaluated the distribution patterns of ALMs and AMNs on the palms and soles among Taiwanese patients.
This document includes the supplementary tables of our study.
DOI: 10.17632/nxhrn795ng
title: 2021 Covid-19 Ecological Sociological, Demographical, Policy Factor Analysis Dataset

description: Sociological, demographic and epidemiological data obtained from open, publicly available sources was compiled into a dataset of national and sub-national statistics with a number of distinct sociological, demographic, policy and epidemiological (Covid-19) parameters. Preprocessing and adjustment of data was performed to ensure correctness of analysis, including adjustment by duration, per capita scaling and similar.
38 national and subnational jurisdictions with 10 parameters in the groups: social behavior; demographics; policy; epidemiological plus Covid-19 impact. Detailed description: S. Dolgikh: "Unsupervised clustering in epidemiological factor analysis". The Open Bioinformatics Journal 14 (1), 63-72 2021.
DOI: 10.17632/r3hybw89zz
title: Safe and sound: fireflies produce ultrasonic clicks during flight – a potential aposematic anti-bat signal - data

description: Audio recordings of fireflies and the example of the code
DOI: 10.17632/rhbktnpyj2
title: C. difficile induces a rapid influx of bile acids

description: Raw LC-MS/MS data of bile acids in liver, cecum and ilea samples and related standards used for calibration curves. Data collected for bile acids using a calibration curve.
DOI: 10.17632/s4r3nf6gbw
title: Holder of pin replication of bacterial set

description: This is supported to material and methods of research articles
DOI: 10.17632/sm47g26jv4
title: Anticancer effects of four ruthenium-cyclopentadienyl compounds in colorectal cancer cells: proteomic data

description: Colorectal cancer (CRC) is the second most deadly type of cancer worldwide. Ruthenium compounds have emerged as promising alternatives to classical chemotherapy in the treatment of CRC. The data available here refer the proteomic study performed with the four ruthenium-cyclopentadienyl compounds in colorectal cancer cells.
DOI: 10.17632/vyhhgsz336
title: Application of the mixing length theory to assess the generation of melt in internally heated systems

description: 1) Data used to generate the figures in the eponym article. The method and research hypothesis is reported in the article, while the datafile contains the gmt files creating the figures. 2) Matlab programs used to calculate the evolution of the generic mantle. The main routine is Evolution_MLT.m.
DOI: 10.17632/z4z4nhy98b
title: Neogene-Quaternary response of the Novohradské hory Mts. (Czech Republic) fluvial systems to tectonics – Analyses of morphotectonics, stream-length index and structural geology

description: Data related to article
DOI: 10.17632/76t4jzcj7k
title: Numerical simulation of constitutive relationship and material structure optimization for FDM 3D printing materials

description: This data provides secondary development code and APDL code
DOI: 10.17632/jvczk66p36
title: Evaluation of a water network’s energy potential in dynamic operation

description: Matlab data and results of water networks energy potential calculation.
The data are for the two subnetworks A and B.
They are separate in 4 folder (input dat, hydro-potential results, heat potentials results, cold potentials result)
DOI: 10.17632/mgb7tv29jn
title: FXR1-mediated gene regulation in cancer

description: Raw Western blot images
DOI: 10.17632/rcv8ys7zw5
title: PROSAIL inversion model for retrieving canopy biochemical component content of Moso bamboo forests under Pantana phyllostachysae Chao-induced stress

description: Field sampling data of each month
DOI: 10.17632/rs3znbpdwf
title: Raw data-Adiponectin and leptin exert antagonizing effects on proliferation and motility of papillary thyroid cancer cell lines

description: raw data of the research work
DOI: 10.17632/t3s52hxm6h
title: Input for phonon calculations of K-Zn-Sb compounds

description: Structural files used for calculations of phonon dispersion and density of states for several compounds from K-Zn-Sb chemical space.
DOI: 10.17632/w4fzh2f9mp
title: Supplementary Material: Low-Cost Wearable Dive Computer for Monitoring, Logging and Presentation of Large-scale Freediving Studies

description: Due to the enormous spread and acceptance of wearables, it has become easier in recent years to collect physical data and use it to improve the living conditions of the wearer. On the other hand, there is the underwater world, in which technological development could not progress so quickly; mainly because the sealing of the device and the interaction with it, pose different and novel problems compared to more widespread wearables. To close this gap, a low-cost dive computer with a customizable set of sensors which is suitable for large-scale data collection for divers is presented in this contribution. This prototype makes use of existing electronic components such as sensors or modules aimed to develop a fully functional and low-cost portable system. In addition, the portable system is also able to store the data of all users bundled on a server for further research. These results cover two primary goals: (1) to provide an easily reproducible portable system at low cost, and (2) to collect data in an easily adaptable platform and its subsequent easy accessibility. Finally, the prototype was built based on the instructions and tested under real conditions.
DOI: 10.17632/xfzkhn94dr
title: Association: VitD, BDNF and Cognitive score

description: This data was used to estimate the association between  25(OH)D (Vitamin D) and the cognitive status of older adults and evaluate whether this association is mediated by brain-derived neurotrophic factor (BDNF) serum concentration.
DOI: 10.17632/yjmhvpp7rf
title: Metabolomic analysis of Nxnl2-/- hippocampal specimens

description: The metabolic and redox signaling of the nucleoredoxin-like 2 gene supports brain function. Metabolomic analysis of standardized hippocampal specimens of ♂ Nxnl2-/- and Nxnl2+/+ aged of 2 months (Figure 4) or treated ♂ and ♀ Nxnl2-/- and Nxnl2+/+ aged of 2 months (Figure 5)  were performed by the national infrastructure MetaToul.
DOI: 10.17632/9x7dxmhfwc
title: Supplement

description: Supplementary Figure 1
DOI: 10.17632/dmr7k3n6tj
title: LINF_010006200

description: hypothetical protein - conserved
DOI: 10.17632/h6y3bhbr7c
title: Sand-flat macrofaunal assemblage data, North Stradbroke Island, 2013

description: Data on the abundance of the individual macrofaunal assemblage components of intertidal bare sand-flats adjacent to seagrass beds at three sites along the southern section of the Rainbow Channel, Moreton Bay, Queensland
DOI: 10.17632/jgf2y682br
title: Solar Disinfection: analyses and results of NASA's Daily Series of Insolation Data for Predicting Exposure Period in Nigeria

description: The operation of solar disinfection (SODIS) systems requires variable exposure period depending upon the available radiation energy. The uncertainty arising from variable exposure period can be resolved by using probability methods. This study presents a methodology for determining SODIS exposure period (days) by analysing the occurrence frequency of the disinfection threshold in a daily series of radiation data. To do this, the exposure period was interpreted as the number of consecutive exposure days until the occurrence of a day whose solar irradiance is greater than the disinfection threshold. Thus, the exposure period required for at least a single occurrence of the disinfection threshold could be estimated with a certain probability of success, depending on the confidence level or risk of underexposure one is willing to take. The folder “NASA's Insolation Data and the Simulated 5-h Average Peak Intensity Equivalence (3600 Datasets)” contains the 3600 (300 times 12) datasets in Excel format representing 300 locations and 12 months in Nigeria. The Excel files are named according to the latitude and longitude and the month the datasets represent. The 5-h average peak intensity equivalence was computed from NASA’s insolation data using the algorithm described in the journal paper associated with this data. The folder “The Results of Pettitt's Homogeneity Test” contains an Excel file and a sub-folder (Homogenous Datasets). The Excel file contains the result of Pettitt’s homogeneity test. The Excel files in the sub-folder “Homogenous Datasets (3600 Datasets)” contains either the same dataset as the files in “NASA's Insolation Data and the Simulated 5-h Average Peak Intensity Equivalence (3600 Datasets)” if the dataset is homogeneous or the longer homogeneous section of the dataset if the dataset is not homogeneous. The datasets in “Homogenous Datasets (3600 Datasets)” were used for the analyses and the prediction of the exposure period. The folder “The Results of the Validation Experiment” contains an Excel file and two sub-folders. The Excel file is the result of the validation experiment reported in the journal paper associated with this data. Each dataset in “Homogenous Datasets (3600 Datasets)” was divided into two halves for validation purposes. The two subfolders contain the first half and the second half of the datasets.
DOI: 10.17632/mzg728nbvr
title: Survey on Cable-TV Subscribers in Nigeria

description: This dataset contains information gathered from Cable-TV subscribers in Nigeria. The aim of the research was to understand how the pricing strategy in Nigeria’s Cable-TV industry affects the welfare of subscribers. Consumer welfare was captured as the difference between market prices and consumers' willingness-to-pay (WTP). These variables are captured in the dataset. 
The research instrument used contains four sections, capturing background information on consumers' socioeconomic characteristics, consumption patterns of Cable-TV services, product and pricing preferences, and general opinions of consumers on the operations of the Cable-TV industry. Please note that Cable-TV as used in the research instrument and in this study also refers to Pay-TV, which is a set of TV channels that involve paid subscriptions before consumers can gain access to view. 
The data was gathered via an online survey and covered respondents from different cities across Nigeria.
DOI: 10.17632/n869jsz7j6
title: LINF_250026200

description: RNA-binding protein | RBP21; Leishmania infantum (strain JPCM5)
DOI: 10.17632/nfjdrbz8vp
title: Homogeneous and heterogeneous reaction rates data pertaining to a catalytically stabilized combustion system with a heat-recirculating structure

description: The homogeneous and heterogeneous reaction rates data are obtained by performing computational fluid dynamics simulations. A mesh independence test is performed to assure independence of the solution to the problem. Velocity inlet boundary conditions are used to define the velocity properties of the flow at the inlet boundary of the fluid region. All the solid surfaces are assumed to be gray and diffuse. The surface-to-surface radiation model is used to account for the radiation exchange in an enclosure of the gray-diffuse surfaces. The radiation model is computationally expensive. The porous media model incorporates independently heat source and momentum resistance terms. The standard energy transport equation is solved in the porous media region with a modification to the heat conduction flux only. A uniform velocity profile is specified at the flow inlet. The temperature of the mixture is prespecified at the flow inlet. The complex physicochemical processes involved in the system can require extensive computing resources. The computational fluid dynamics calculations may take days in order to arrive at a reasonably accurate solution, using fine grids of the system, due to the time-consuming nature of the model. The mathematical formalism developed to describe transport phenomena and chemical kinetics is implemented into ANSYS FLUENT. The computer code and its usage are fully documented. More specifically, ANSYS FLUENT is applied to define the terms in the equations relating to conservation, thermodynamics, chemical production rates, and equation of state, and then combine the results to define the problem involving surface chemistry. To describe the surface reaction mechanisms in symbolic form, the following information is required, including the thermochemical properties of surface species in the surface phases, names of the surface species, site densities, names of all surface phases, Arrhenius rate coefficients, reaction descriptions, and any optional coverage parameters. Natural parameter continuation is performed by moving from one stationary solution to another. A critical point is denoted as the solution to the problem when a turning point is reached. Knowledge of critical parameters of flow velocity and heat loss coefficient gains a fundamental understanding of the essential factors affecting the stability of the combustion process. The critical parameters are useful as the design guides associated with the system.
Contributor: Junjie Chen, E-mail address: koncjj@gmail.com, ORCID: 0000-0002-5022-6863, Department of Energy and Power Engineering, School of Mechanical and Power Engineering, Henan Polytechnic University, 2000 Century Avenue, Jiaozuo, Henan, 454000, P.R. China
DOI: 10.17632/ttcf34vgk5
title: Data for: Is the past history of acidic deposition in eastern Canada reflected in sugar maples's tree rings 87Sr/86Sr, Sr and Ca concentrations?

description: These data show Sr and Ca concentrations as well as Sr isotopic ratio in tree rings of sugar maple trees and in soil extracts.
DOI: 10.17632/xy8wt4ty8f
title: Unprecedented genetic diversity suggests importance of understudied PFam54 paralogs to Lyme borreliosis spirochetes

description: This data accompanies the pre-print found here DOI: 10.22541/au.169323152.28257088/v1

The goal of the project was to understand what level of standing variation exists on the PFam54 gene array in the three major Borrelia species which can cause Lyme borreliosis in humans across Eurasia (Borrelia afzelii, Borrelia bavariensis, and Borrelia garinii). The data uploaded here refers to all of the raw inputs for the various analyses done (i.e., phylogenetic reconstruction, selection analysis) and all outputs of these analyses. The basis of the analysis is utilizing whole genome sequencing data produced as part of a larger project for samples described in a previous publication: DOI: 10.1111/mec.16805.
DOI: 10.17632/35tfs6y2nt
title: raw data

description: Data collection and writing manuscript
DOI: 10.17632/3pj4nnhng5
title: Electrocardiogram (QRS amplitude, duration & axis)

description: Twenty-five consented healthy volunteers were studied. Each participant was given 250 ml of cold water, room temperature water, and warm water to drink with a ten minute interval between each drink. An electrocardiographic experiments were conducted on the participants following each drink to record their frontal plane electrocardiogram in a digital form. The frontal plane 12-lead electrocardiogram was acquired, by first recording the lead I and lead II of the bipolar leads. This was then used to calculate the four other limb leads using Einthoven laws. Each chest lead was recorded together with the six limb leads to obtain the full twelve leads of the electrocardiogram. The QRS amplitudes and duration of the four conditions were acquired using the integrated software of the recording system while the QRS axis was calculated manually using the bipolar method on a Vectorgram. These measurements were analyzed using one-way repeated measures analysis of variance, and the analysis of the coefficient of variations.
DOI: 10.17632/77wfrvcsm7
title: Avaliação das propriedades sensoras de diferentes nanoestruturas de ZnO para detecção de O₃.

description: XRD  and SEM data analysis data

Gas sensor analysis data
DOI: 10.17632/9nypchrnb3
title: Grain size ang Geochemistry data of Murakanskoye ans Maloye Murakanskoye lakes

description: Here are the results of grain size and geochemical analysis (TC, TN, Corg, Cinc, δ13 C). The presented materials are additions to the article "Reconstruction of relative sea-level (RSL) changes based on a multiproxy study of isolated basins on the Onega Peninsula (White Sea, Northwestern Russia)".
DOI: 10.17632/b9mzfprdxb
title: Supplementary Material

description: These are supplementary materials of the manuscript named <Removal of NO by carbon-based catalytic reduction bed loaded with Mn induced by dielectric barrier discharge at low temperature>, including one table and one figure.
DOI: 10.17632/bp72jcvh8f
title: LINF_290029700

description: dynamin-1-like protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/jtr4h8pmkc
title: Dynamic regulation of eEF1A1 acetylation affects colorectal carcinogenesis

description: Raw data of the study about dynamic regulation of eEF1A1 acetylation affecting colorectal carcinogenesis
DOI: 10.17632/r8y38sjwgw
title: Protein modeling data for functional protein(s) of interest (POI) using the “Light-Clothing” strategy

description: Protein modeling data for functional protein(s) of interest (POI) using the “Light-Clothing” strategy. data.zip contains 3 folders: Folder EGF for structures of the human epidermal growth factor (EGF, PDB ID: 1JL9 chain A), the heavily-clothed EGF, and the lightly-clothed EGF. Folder FGF for structures of the basic fibroblast growth factor (FGF, PDB ID: 1BFG chain A), the heavily-clothed FGF, and the lightly-clothed FGF. Folder IGF for structures of the human insulin-like growth factor (IGF, PDB ID: 1BQT chain A), the heavily-clothed IGF, and the lightly-clothed IGF.