cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qh94th
title: Occurrence Download

description: A dataset containing 6501 records in GBIF matching the query:
SELECT
 '613' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 66.79314043790278
 AND decimalLatitude &lt;= 72.77152049497572
 AND decimalLongitude &gt;= 44.9001961481604
 AND decimalLongitude &lt;= 64.79971620195087
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 6501 records were derived from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000854-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7xjkfm
title: Occurrence Download

description: A dataset containing 198 records in GBIF matching the query:
SELECT 
 "gbifid", "taxonkey", "phylum", "class", "order", "eventdate", "year", "month", "day", "georeferenceddate", "dateidentified", "lastinterpreted", "basisofrecord", "hasgeospatialissues", "hascoordinate", "occurrencestatus"
 FROM occurrence
 WHERE 
 "decimallatitude" &gt; 41.9 AND "decimallatitude" &lt;= 41.905 AND "decimallongitude" &gt; -70.6 AND "decimallongitude" &lt;= -70.595

 The dataset's 198 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000858-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9sanq
title: Occurrence Download

description: A dataset containing 37828 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mosquito Alert Dataset"
 ]
}

 The dataset includes 37828 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000849-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w346u7
title: Occurrence Download

description: A dataset containing 751193 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Danaus plexippus"
 ]
}

 The dataset includes 751193 records from 375 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000819-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29137418.v1
title: Supplementary Material for: High-Fat Diet-Induced Gut Microbiota Disruption Promotes Colorectal Cancer Lymphatic Metastasis via Propionate/GPR41 Signaling

description: Objective: High-fat diets (HFD) are known to affect the gut microbiome structure and potentially promote the development and metastasis of colorectal cancer (CRC). This study aims to elucidate the molecular mechanisms through which gut microbiome dysbiosis, mediated by the propionate/GPR41 signaling pathway, promotes lymphangiogenesis and lymph node (LN) metastasis in CRC, providing new insights for CRC treatment.
Methods: Microbial diversity and composition in rectal cancer were compared between CRC patients and healthy controls using 16s rRNA sequencing. Key genes related to short-chain fatty acid metabolism, HFD, and gut microbiota were identified. In vitro assays assessed CRC cell proliferation, migration, invasion, and lymphangiogenesis. A CRC mouse model on an HFD was used to measure fecal propionate levels and analyze GPR41 expression in tumors. In vivo fluorescence imaging was employed to track cancer cell migration and lymph node metastasis.
Results: HFD-induced microbial dysbiosis led to a significant reduction in SCFA-producing bacteria and an increase in pro-inflammatory species. This dysbiosis contributed to the suppression of propionate’s protective effects. Propionate inhibited CRC cell proliferation, migration, and invasion under HFD conditions by activating the GPR41 pathway. Silencing GPR41 reversed these inhibitory effects, highlighting the key role of GPR41 in mediating propionate’s anti-tumor effects. In vivo experiments further confirmed that propionate suppressed HFD-enhanced CRC lymphatic metastasis through the GPR41 signaling pathway, linking microbial dysbiosis with the modulation of cancer progression.
Conclusion: This study reveals that HFD promotes CRC lymphangiogenesis and LN metastasis through gut microbiota dysbiosis and suppression of the propionate-activated GPR41 signaling pathway. These findings highlight the therapeutic potential of targeting the propionate/GPR41 axis , offering a promising strategy for developing novel anticancer therapies.
DOI: 10.17632/w7x25j7f5f
title: Immune checkpoint inhibitors induced Lichenoid reactions: A Systematic Review of Characteristics and Treatment Outcomes

description: This systematic review aims to summarize reports of ICI-induced LR, offending drugs, and treatment outcomes.
DOI: 10.6084/m9.figshare.5114110.v3
title: Salix alba chorology

description: Distribution map of white willow (<i>Salix alb</i>a)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.17632/zn276jfnnp
title: Digitalization and innovation: How does the digital economy drive technology transfer in China?

description: The replication folder which includes all data and files used in this paper.
DOI: 10.6084/m9.figshare.19397132.v1
title: Entire Arthropod Dataset (Input data for R script).xlsx

description: Input data for R script.<br>
DOI: 10.6084/m9.figshare.25053341.v1
title: Drosophila_saltans_group_phylogeny_BUSCO_Beast

description: BEAST analysis of BUSCO genes concatenated by Muller element according to their D. melanogaster othologs (A= X, B= 2L, C=2R, D=3L, E=3R, F=4).
DOI: 10.6084/m9.figshare.25665303.v1
title: <b>Similarities and divergent patterns in flux-storage simulations in global water models</b>

description: Here we have analyzed the similarities and divergent patterns in fluxes and storages simulations in global water models.
DOI: 10.6084/m9.figshare.26044897.v1
title: Intertidal biodiversity and habitat surveys in the northeast Pacific.

description: Open-access portion of data from multiple surveys of 24 First Nations clam gardens, shellfish aquaculture farms, and non-walled or unmodified beaches along the west coast of Canada. Portions of these data are culturally sensitive in nature and can be requested via https://doi.org/10.6084/m9.figshare.25904917. This repository contains data that is not culturally sensitive in nature (i.e. the reference (control) sites data), and the tables and code supporting the manuscript.<br>
DOI: 10.6084/m9.figshare.5123299.v1
title: Supplementary Material for: Family History Tools in Primary Care: Does One Size Fit All?

description: Family health history (FHH) has potential value in many health care settings. This review discusses the potential uses of FHH information in primary care and the need for tools to be designed accordingly. We developed a framework in which the attributes of FHH tools are mapped against these different purposes. It contains 7 attributes mapped against 5 purposes. In considering different FHH tool purposes, it is apparent that different attributes become more or less important, and that tools for different purposes require different implementation and evaluation strategies. The context in which a tool is used is also relevant to its effectiveness. For FHH tools, it is unlikely that ‘one size fits all’, although appreciation of different purposes, users and contexts should facilitate the development of different applications from single FHH platforms.
DOI: 10.17632/jnw2mr2vyw
title: Order set of the order picking problem

description: The order set file includes the arrival time and the detailed ordered items for a timeframe of 60 days with 4000 customer orders, in a online-to-offline grocery. The arrival time is 0~750. The number of items is 1200. The value is 1 if the item is ordered, otherwise 0.
DOI: 10.17632/v4n25ncc4n
title: OLBI dataset

description: The Greek version of the Oldenburg Burnout Inventory, used to assess exhaustion and disengagement from work, was analyzed using IRT analyses, to investigate the dimensionality and the psychometric properties of the measure’s items. The OLBI was administered to 617 Greek employees, from which 314 participated to the validation study (not available in this repository). Results indicated that four negatively-keyed items from the original measure exhibited excellent psychometric properties (item/test information functions) and were used for the screening version of the OLBI. The scr-OLBI was tested for differential item functioning (DIF) between male and female employees; no bias detected in relation to gender. Our results reveal that the scr-OLBI is a reliable and valid indicator of work-related burnout, which appears to be functionally equivalent to the original version both theoretically and empirically, yet pertains the advantages of a screening tool.
DOI: 10.15468/dl.qetafs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((17.949 -34.5253,17.9648 -34.5378,17.9648 -34.1504,17.8905 -34.1504,17.949 -34.5253))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013410-250525065834625/datasets/export for details.
DOI: 10.17632/hzrdry76kb
title: Currículos de Enfermagem

description: Trata-se de dados relacionados ao Projetos Pedagógicos de Cursos de Enfermagem de Universidades Federais do Nordeste brasileiro.
DOI: 10.17632/zsvmk5mzs5
title: Mass movements data

description: Point cloud data of gully slope and mass movements data
DOI: 10.6084/m9.figshare.13655990.v1
title: Data and R code for: Blandino et al. 2021 - Plant reproductive traits in old and recently-restored temperate forest understories

description: The following data, associated with the article "Blandino et al. 2021 - Plant reproductive traits in old and recently-restored temperate forest understories", are available: 1) "species.abundance.data" . Original species abundance data from 40 forest plot 2) "seed.germination.data" . Original seed germination data from the understory species collected in the forest plots 3) "incubator.temperatures". Original data on temperatures recorded inside the incubators during the germination experiments. 4) "plant.regeneration.data". Data matrix od 18 plant regeneration traits from original measurements (seed width, embryo to endosperm ratio, time to 50% germination, final germination proportion, lag between radicle and cotyledon emergence); literature review (seed dormancy type, cold and warm stratification requirements, germination response to light, and effective germination temperature, month of flowering, clonality); and the TRY database (www.try-db.org, Kattge et al., 2011, plant height, seed dry mass, seed number per plant, seed terminal velocity and seed longevity in the soil). 5) The R script used to perform the analysis. <br><br><br>
DOI: 10.6084/m9.figshare.24208662.v1
title: S012.zip

description: Data for S012
DOI: 10.6084/m9.figshare.28870406.v1
title: Scripts for Breast Cancer Bulk RNA-Seq Differential Expression, Survival, and Enrichment Analyses Using GEO Data

description: This repository contains R and Python scripts used to analyze bulk RNA-Seq datasets from the Gene Expression Omnibus (GEO) related to breast, prostate, endometrial, lung, and colorectal cancer. The workflow includes differential expression analysis, survival analysis, functional enrichment, and visualization.Included workflows:<b>R scripts:</b><b>Data processing and normalization</b> of GEO-derived bulk RNA-Seq datasets.<b>Differential expression analysis</b> (DEG) using limma.<b>Survival analysis</b> using Cox proportional hazards models<b>Functional enrichment analysis</b> (GO, Reactome) of overlapping DEGs to identify significant pathways<b>Python scripts:</b><b>Forest plot generation</b> using Matplotlib and Seaborn to visualize the survival analysis's hazard ratios and confidence intervals.<b>Data Source:</b>Publicly available bulk RNA-Seq datasets from the <b>Gene Expression Omnibus (GEO)</b> database.
DOI: 10.6084/m9.figshare.10565792.v1
title: Ninespine_RepeatLibrary.fasta

description: Repeat library for ninespined-stickleback genome
DOI: 10.6084/m9.figshare.11988042.v1
title: Parameters of the stereological analyses

description: This tables are supplemental data of the the paper titled "Actions of peripubertal gonadal steroids in the formation of sexually dimorphic brain regions in mice".
DOI: 10.6084/m9.figshare.13005326.v1
title: Supplementary Material for: Minimally Invasive Resection of Large Gastric Gastrointestinal Stromal Tumors

description: <b><i>Introduction:</i></b> Gastrointestinal stromal tumors (GISTs) frequently present as a large exophytically growing mass in the stomach, for which open partial gastrectomy is standard of care. The aim of this study was to evaluate the safety and feasibility of minimally invasive gastric resection (MIG) of large (&gt;5 cm) GIST. <b><i>Methods:</i></b> All patients who underwent MIG for a GIST in the University Medical Center Utrecht between 2011 and 2019 were included. Postoperative course and oncological outcomes were analyzed. <b><i>Results:</i></b> Twenty-two patients with gastric GIST, median size 53 mm [20–175 mm], underwent MIG. In 4 patients, preoperative imatinib was given, aiming for tumor regression. Conversion from laparoscopic to open surgery occurred once (5%). An additional resection was performed in 3 patients (14%). In 2 patients (9%), an intraoperative complication occurred, consisting of tumor rupture in 1 patient (5%), and 6 patients (27%) developed postoperative complications. Median hospital stay was 5 days [3–7 days]. R0 resection was achieved in 96%. In 4 patients, adjuvant treatment was indicated. The median follow-up was 31 months, and 1-, 3- and 5-year disease-free survival were 94, 74 and 74%, respectively. One patient presented with local recurrence 2 years after the index resection. <b><i>Conclusion:</i></b> MIG for large GIST up to 17.5 cm in diameter is safe, feasible, and oncologically sound, allowing for a controlled resection and reduced patient morbidity.
DOI: 10.6084/m9.figshare.19232523.v1
title: Image data and labels

description: The original resolution of in total 40 images is 2048x1536 divided into three datasets (images in set I: 20x, set II: 10x, set III:10x). Each of the three datasets correspond to a specific cooling strategy (i,ii or iii) of a bainitic steel and therefore to a bainitic microstructure with specific characteristics. After cropping the image size of each dataset, sub-datasets are created with image resolution: 768x768, 512x512, 256x256, 192x192, 128x128 and 64x64 (only for dataset II). Each sub-dataset contains a training set ("im_train"), validation set ("im_val") and labels for train and validation set. The appendix provides (i) a dataset consisting of all 40 images in reference size, (ii) the reference images of dataset I which was merged from images of two cooling strategies.
DOI: 10.6084/m9.figshare.24321496.v4
title: Electrochemical Impedance Spectroscopy (EIS) measurements of Hybrid Supercapacitor

description: Hybrid Supercapacitors (HSC) are innovative energy storage solutions that are becoming essential in many fields of applications, like automotive, aerospace and consumer electronics. Their performances are strongly influenced by several parameters, such as temperature conditions, load characteristics and State-Of-Charge (SOC). For this reason, it is becoming fundamental to characterize their performances under different scenarios.<br>One of the best ways to investigate the performances is by employing the Electrochemical Impedance Spectroscopy (EIS) measurement. However, since HSC is a recent technology, databases and studies focused on impedance analysis are not currently available in the literature.<br>For this reason, this work presents the results of a large measurement campaign carried out to acquire impedance data on a large frequency range (from 1 mHz to 100 kHz) under 8 different operating temperatures and 6 different operating SOC conditions.<br>The constructed dataset has been used to investigate impedance anomalies and to analyze the effects that temperatures and SOC may have on the HSC impedance in the following paper: "M. Catelani, L. Ciani, F. Corti, M. Laschi, G. Patrizi, A. Reatti, D. Vangi, “Experimental characterization of Hybrid Supercapacitor under different operating conditions using EIS Measurements”, IEEE Trans. Instrum. Meas., Article Sequence Number: 3503210, vol. 73, 2024".<br>The obtained dataset can also be used for diagnostic and prognostic purposes, as well as for battery-supercapacitor comparison, SOC estimation, and safety zone identification.<br><br><b>If using this dataset in a publication, please kindly cite: </b><b>"M. Catelani, L. Ciani, F. Corti, M. Laschi, G. Patrizi, A. Reatti, D. Vangi, “Experimental characterization of Hybrid Supercapacitor under different operating conditions using EIS Measurements”, IEEE Trans. Instrum. Meas., Article Sequence Number: 3503210, Vol. 73, 2024, DOI: 10.1109/TIM.2023.3329094 ".</b><br><br>Publication link: https://ieeexplore.ieee.org/document/10304173<br><br>If you have any question about the dataset or how to use it , please feel free to contact Gabriele Patrizi at the following e mail address: gabriele.patrizi@unifi.it
DOI: 10.6084/m9.figshare.28756724.v1
title: Neuronal Calcium Signal Recordings of <i>Xenopus laevis </i>Tadpoles

description: Neuronal calcium signal recordings of <i>Xenopus laevis </i>brains, allowing visualization of the neuronal activity that is occurring within the brain. These were analyzed to investigate whether the knockdown of the <i>Eef1a2</i> gene would result in the widespread neuronal hyper-activity associated with the manifestation of electrical seizures. <i>X. laevis </i>tadpole groups include, 5M control tadpoles, sgRNA15 CRISPants, and sgRNA35 CRISPants
DOI: 10.6084/m9.figshare.6892193.v1
title: Supplementary Material for: Skeletal Muscle Tissue Trib3 Links Obesity with Insulin Resistance by Autophagic Degradation of AKT2

description: <b><i>Background/Aims:</i></b> Obesity is a serious health risk factor strongly associated with insulin resistance and type 2 diabetes; however, the underlying mechanisms associating obesity with insulin resistance remain unknown. In this study, we explored the physiological role of Trib3 in regulating glucose metabolism in skeletal muscle tissues in a Trib3 transgenic mice model. <b><i>Methods:</i></b> Glucose metabolism in transgenic mice overexpressing Trib3 specifically in the skeletal muscle was examined by glucose/insulin tolerance test, metabolic cage studies, and glucose uptake assay. The effect of Trib3 overexpression on AKT phosphorylation and AKT protein turnover were assessed by RT-PCR and immunoblot analysis. Subcellular distribution of Trib3 and AKT1/2 was determined by microscopic analysis, co-immunoprecipitation experiments, and limited-detergent extraction of subcellular organelles. Ubiquitin assay was performed and ATG7 deficient cell line was employed to address the mechanisms of Trib3-dependent AKT protein homeostasis. <b><i>Results:</i></b> We found that Trib3 expression in skeletal muscle is elevated in obese conditions, and transgenic mice that overexpressed Trib3, specifically in skeletal muscle tissues, displayed impaired glucose homeostasis by suppressing insulin-stimulated glucose uptake. Disruption of insulin signaling in skeletal muscle Trib3 transgenic mice may occur due to the specific downregulation of AKT2 but not AKT1. Autophagy regulated AKT2 protein turnover, and Trib3 overexpression stimulated autophagic degradation of AKT2 by promoting AKT2 ubiquitination. <b><i>Conclusion:</i></b> Because diet-induced obesity upregulates Trib3 and downregulates AKT2 in skeletal muscle tissues, Trib3 may play a key role in establishing an association between obesity and insulin resistance by regulating AKT2 protein homeostasis.
DOI: 10.6084/m9.figshare.909347.v1
title: Data and scripts to simulate species loss and functional loss in lagoons

description: These files were used for the analyses in Faulwetter, S, Papageorgiou N, Koulouri Y, Fanini L, Chatzinikolaou E, Markantonatou V, Pavloudi C, Chatzigeorgiou G, Keklikoglou K, Vasileiadou A et al. "Comparison of structural and functional stability of polychaete assemblages in coastal lagoons". Submitted to Journal of Sea Research. The files are 1. match_traits_to_lagoons.sql: an sql database which contains all the data needed for the analysis.<br>2. randomDraws.r: Randomly excludes x species or the traits of x species (with x increasing per round) from the total species pool in each lagoon<br>3. compare.r: Compares for each lagoon the species and traits patterns (min, max, median and range curve). Needs the output files from randomDraws.r<br>4. plotting.r: plots the results from randomDraws.r, needs the output files from that script.
DOI: 10.6084/m9.figshare.25331863.v1
title: PRISMA_2020_flow_diagram.docx

description: PRISMA_2020_flow_diagram