cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7477574
title: Investigation of age–treatment interaction in the SPACE trial using different statistical approaches

description: Selection of treatments to fit the specific needs for a certain patient is one major challenge in modern medicine. Personalized treatments rely on established patient–treatment interactions. In recent years, various statistical methods for the identification and estimation of interactions between relevant covariates and treatment were proposed. In this article, different available methods for detection and estimation of a covariate–treatment interaction for a time-to-event outcome, namely the standard Cox regression model assuming a linear interaction, the fractional polynomials approach for interaction, the modified outcome approach, the local partial-likelihood approach, and STEPP (Subpopulation Treatment Effect Pattern Plots) were applied to data from the SPACE trial, a randomized clinical trial comparing stent-protected angioplasty (CAS) to carotid endarterectomy (CEA) in patients with symptomatic stenosis, with the aim to analyse the interaction between age and treatment. Time from primary intervention to the first relevant event (any stroke or death) was considered as outcome parameter. The analyses suggest a qualitative interaction between patient age and treatment indicating a lower risk after treatment with CAS compared to CEA for younger patients, while for elderly patients a lower risk after CEA was observed. Differences in the statistical methods regarding the observed results, applicability, and interpretation are discussed.
DOI: 10.7284/112229
title: Meteorological Station data collected during research cruise MGL1302 using a RM Young 26700 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477568
title: Optimal navigation (ON) model - numerical implementation

description: Implementation of the optimal navigation (ON) model accompanying the paper 'Collective search with finite perception: transient dynamics and search efficiency' by Gosztolai et al., Frontiers in Physics (2019) 10:153<br><b>runON.m</b> runs the ON model in Matlab in various configurations and can be used to reproduce the results in the paper. The code has been written and tested in Matlab_R2017b.<br><b>ON1D.m </b>and <b>ON2D.m</b> are functions containing the 1D and 2D implementation of the ON model, which are called by runON.m<br><br>The <b>.avi</b> files contain simulations of the evolution in 2D for time horizons 5, 10, 100, 1000, as described in the paper.
DOI: 10.7284/112225
title: Multibeam Echosounder data collected during research cruise MGL1302 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477562
title: Simulation results

description: Dataset as the supporting information of the manuscript: Intervention on default contagion under partial information in a financial network published by journal PLOS ONE. The spreadsheet contains two tables which includes, respectively, under the optimal and alternative intervention policies, the scaled number of interventions R/n, the scaled number of defaults D/n, the scaled process end time T/m and the objective function value for the number of nodes n = 5^4 ,6^4 ,...,10^4 and there are 100 runs for each n.
DOI: 10.6084/m9.figshare.7477574.v2
title: Investigation of age–treatment interaction in the SPACE trial using different statistical approaches

description: Selection of treatments to fit the specific needs for a certain patient is one major challenge in modern medicine. Personalized treatments rely on established patient–treatment interactions. In recent years, various statistical methods for the identification and estimation of interactions between relevant covariates and treatment were proposed. In this article, different available methods for detection and estimation of a covariate–treatment interaction for a time-to-event outcome, namely the standard Cox regression model assuming a linear interaction, the fractional polynomials approach for interaction, the modified outcome approach, the local partial-likelihood approach, and STEPP (Subpopulation Treatment Effect Pattern Plots) were applied to data from the SPACE trial, a randomized clinical trial comparing stent-protected angioplasty (CAS) to carotid endarterectomy (CEA) in patients with symptomatic stenosis, with the aim to analyse the interaction between age and treatment. Time from primary intervention to the first relevant event (any stroke or death) was considered as outcome parameter. The analyses suggest a qualitative interaction between patient age and treatment indicating a lower risk after treatment with CAS compared to CEA for younger patients, while for elderly patients a lower risk after CEA was observed. Differences in the statistical methods regarding the observed results, applicability, and interpretation are discussed.
DOI: 10.6084/m9.figshare.7477574.v1
title: Investigation of age–treatment interaction in the SPACE trial using different statistical approaches

description: Selection of treatments to fit the specific needs for a certain patient is one major challenge in modern medicine. Personalized treatments rely on established patient–treatment interactions. In recent years, various statistical methods for the identification and estimation of interactions between relevant covariates and treatment were proposed. In this article, different available methods for detection and estimation of a covariate–treatment interaction for a time-to-event outcome, namely the standard Cox regression model assuming a linear interaction, the fractional polynomials approach for interaction, the modified outcome approach, the local partial-likelihood approach, and STEPP (Subpopulation Treatment Effect Pattern Plots) were applied to data from the SPACE trial, a randomized clinical trial comparing stent-protected angioplasty (CAS) to carotid endarterectomy (CEA) in patients with symptomatic stenosis, with the aim to analyse the interaction between age and treatment. Time from primary intervention to the first relevant event (any stroke or death) was considered as outcome parameter. The analyses suggest a qualitative interaction between patient age and treatment indicating a lower risk after treatment with CAS compared to CEA for younger patients, while for elderly patients a lower risk after CEA was observed. Differences in the statistical methods regarding the observed results, applicability, and interpretation are discussed.
DOI: 10.6084/m9.figshare.7477556
title: Wave-Driven Sediment Resuspension within a Model Eelgrass Meadow

description: Data of ripple geometry, turbulent kinetic energy, and sediment concentration associated with the manuscript "Wave-driven sediment resuspension within a model eelgrass meadow" by Zhang and Nepf.
DOI: 10.6084/m9.figshare.7477568.v1
title: Matlab code of the optimal navigation (ON) model

description: Implementation of the optimal navigation (ON) model accompanying the paper 'Collective search with finite perception: transient dynamics and search efficiency' by Gosztolai et al., Frontiers in Physics (2018)<br><b>runON.m</b> runs the ON model in Matlab in various configurations and can be used to reproduce the results in the paper. The code has been written and tested in Matlab_R2017b.<br><b>ON1D.m </b>and <b>ON2D.m</b> are functions containing the 1D and 2D implementation of the ON model, which are called by runON.m<br><br>The <b>.avi</b> files contain simulations of the evolution in 2D for time horizons 5, 10, 100, 1000, as described in the paper.
DOI: 10.7284/112227
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise MGL1302 using a LDEO pCO2 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477553
title: Program and data. Technique for Predicting Overlaps of Visibility Zones from Auroral Imagers of Spacecrafts

description: Program for determining the overlaps of visibility zones from two auroral space imagers.<br>It considers the orientation of spacecrafts to the Sun and the angles of slope of the imagers.<br>Baseline data, to which the method was then applied, was obtained using a numerical model of the motion of spacecraft.This model is not freely available.<br><br>Repack archives in folders Meteor and Zond respectively.Run the programs1. TPOVZ.f902. tableone.f903. numresult.f90<br>
DOI: 10.6084/m9.figshare.7477562.v1
title: Simulation result

description: Data set as supporting information of the manuscript Intervention on default contagion under partial information in a financial network published by journal PLOS ONE
DOI: 10.6084/m9.figshare.7477556.v1
title: Wave-Driven Sediment Resuspension within a Model Eelgrass Meadow

description: Data of ripple geometry, turbulent kinetic energy, and sediment concentration associated with the manuscript "Wave-driven sediment resuspension within a model eelgrass meadow" by Zhang and Nepf
DOI: 10.7284/112230
title: Singlebeam Echosounder data collected during research cruise MGL1302 using a Knudsen 3260 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477553.v2
title: Program and data. Technique for Predicting Overlaps of Visibility Zones from Auroral Imagers of Spacecrafts

description: Program for determining the overlaps of visibility zones from two auroral space imagers.<br>It considers the orientation of spacecrafts to the Sun and the angles of slope of the imagers.<br>Baseline data, to which the method was then applied, was obtained using a numerical model of the motion of spacecraft.This model is not freely available.<br><br>Repack archives in folders Meteor and Zond respectively.Run the programs1. TPOVZ.f902. tableone.f903. numresult.f90<br>
DOI: 10.6084/m9.figshare.7477556.v3
title: Wave-Driven Sediment Resuspension within a Model Eelgrass Meadow

description: Data of ripple geometry, turbulent kinetic energy, and sediment concentration associated with the manuscript "Wave-driven sediment resuspension within a model eelgrass meadow" by Zhang and Nepf.
DOI: 10.6084/m9.figshare.7477562.v2
title: Simulation result

description: Dataset as the supporting information of the manuscript: Intervention on default contagion under partial information in a financial network published by journal PLOS ONE. The spreadsheet contains two tables which includes, respectively, under the optimal and alternative intervention policies, the scaled number of interventions R/n, the scaled number of defaults D/n, the scaled process end time T/m and the objective function value for the number of nodes n = 5^4 ,6^4 ,...,10^4 and there are 100 runs for each n.
DOI: 10.6084/m9.figshare.7477553.v1
title: Program and data. Technique for Predicting Overlaps of Visibility Zones from Auroral Imagers of Spacecrafts

description: Program for determining the overlaps of visibility zones from two auroral space imagers.<br>It considers the orientation of spacecrafts to the Sun and the angles of slope of the imagers.<br>Baseline data, to which the method was then applied, was obtained using a numerical model of the motion of spacecraft.This model is not freely available.<br><br>Repack archives in folders Meteor and Zond respectively.Run the programs1. TPOVZ.f902. tableone.f903. numresult.f90<br>
DOI: 10.6084/m9.figshare.7477556.v2
title: Wave-Driven Sediment Resuspension within a Model Eelgrass Meadow

description: Data of ripple geometry, turbulent kinetic energy, and sediment concentration associated with the manuscript "Wave-driven sediment resuspension within a model eelgrass meadow" by Zhang and Nepf<br>Sorry, as the manuscript has not been accepted the data is not available now. Thanks!
DOI: 10.7284/112228
title: TSG (Thermosalinograph) data collected during research cruise MGL1302 using a Sea-Bird SBE-21 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477544
title: Verbose community analysis results. from Biological interactions mediate context and species-specific sensitivities to salinity

description: Toxicants have both sub-lethal and lethal effects on aquatic biota, influencing organism fitness and community composition. However, toxicant effects within ecosystems may be altered by interactions with abiotic and biotic ecosystem components, including biological interactions. Collectively this generates the potential for toxicant sensitivity to be highly context dependent, with significantly different outcomes in ecosystems than laboratory toxicity tests predict. We experimentally manipulated stream macroinvertebrate communities in 32 mesocosms to examine how communities from a low-salinity site were influenced by interactions with those from a high-salinity site across a gradient of salinity. Relative to those from the low-salinity site, organisms from the high-salinity site were expected to have greater tolerance and fitness at higher salinities. This created the potential for both salinity and tolerant-sensitive organism interactions to influence communities. We found that community composition was influenced by both direct toxicity and tolerant-sensitive organism interactions. Taxon and context-dependent responses included: (i) direct toxicity effects, irrespective of biotic interactions; (ii) effects that were owing to the addition of tolerant taxa, irrespective of salinity; (iii) toxicity dependent on sensitive-tolerant taxa interactions; and (iv) toxic effects which that were increased by interactions. Our results reinforce that ecological processes require consideration when examining toxicant effects within ecosystems.This article is part of the theme issue ‘Salt in freshwaters: causes, ecological consequences and future prospects’.
DOI: 10.6084/m9.figshare.7477562.v4
title: Simulation results

description: Dataset as the supporting information of the manuscript: Intervention on default contagion under partial information in a financial network published by journal PLOS ONE. The spreadsheet contains two tables which includes, respectively, under the optimal and alternative intervention policies, the scaled number of interventions R/n, the scaled number of defaults D/n, the scaled process end time T/m and the objective function value for the number of nodes n = 5^4 ,6^4 ,...,10^4 and there are 100 runs for each n.
DOI: 10.6084/m9.figshare.7477544.v1
title: Verbose community analysis results. from Biological interactions mediate context and species-specific sensitivities to salinity

description: Toxicants have both sub-lethal and lethal effects on aquatic biota, influencing organism fitness and community composition. However, toxicant effects within ecosystems may be altered by interactions with abiotic and biotic ecosystem components, including biological interactions. Collectively this generates the potential for toxicant sensitivity to be highly context dependent, with significantly different outcomes in ecosystems than laboratory toxicity tests predict. We experimentally manipulated stream macroinvertebrate communities in 32 mesocosms to examine how communities from a low-salinity site were influenced by interactions with those from a high-salinity site across a gradient of salinity. Relative to those from the low-salinity site, organisms from the high-salinity site were expected to have greater tolerance and fitness at higher salinities. This created the potential for both salinity and tolerant-sensitive organism interactions to influence communities. We found that community composition was influenced by both direct toxicity and tolerant-sensitive organism interactions. Taxon and context-dependent responses included: (i) direct toxicity effects, irrespective of biotic interactions; (ii) effects that were owing to the addition of tolerant taxa, irrespective of salinity; (iii) toxicity dependent on sensitive-tolerant taxa interactions; and (iv) toxic effects which that were increased by interactions. Our results reinforce that ecological processes require consideration when examining toxicant effects within ecosystems.This article is part of the theme issue ‘Salt in freshwaters: causes, ecological consequences and future prospects’.
DOI: 10.6084/m9.figshare.7477550
title: Some interpretations of the notions of "impact" or" influence" given in authoritative scientometric publications

description: <i>For a better theoretical understanding of the notion of "impact" (introduced by E. Garfield in 1955) definitions and perceptions of the mentioned notion used in scientometrics literature have been analyzed. (The original concept of 'scientific impact' (that was initially named as mere “impact”), not of 'social impact' (or, more precisely, 'impact on society'), was under consideration.) </i><i>The existing and used meanings of the term "impact" either are treated as a synonym of “influence” (the word that has no further definition!) or do not go beyond the concept of "strong impression", or coincide with the meaning of the term "pertinence", or refer to purely technical indicators. No unified definition is in operation. </i><i>The existing and used meanings of the term "impact" either are treated as a synonym of “influence” (the word that has no further definition!) or do not go beyond the concept of "strong impression", or coincide with the meaning of the term "pertinence", or refer to purely technical indicators. No unified definition is in operation. The Table </i><i>summarizes the above stated.</i>
DOI: 10.6084/m9.figshare.7477550.v1
title: Some interpretations of the notions of "impact" or" influence" given in authoritative scientometric publications

description: <i>For a better theoretical understanding of the notion of "impact" (introduced by E. Garfield in 1955) definitions and perceptions of the mentioned notion used in scientometrics literature have been analyzed. (The original concept of 'scientific impact' (that was initially named as mere “impact”), not of 'social impact' (or, more precisely, 'impact on society'), was under consideration.) </i><i>The existing and used meanings of the term "impact" either are treated as a synonym of “influence” (the word that has no further definition!) or do not go beyond the concept of "strong impression", or coincide with the meaning of the term "pertinence", or refer to purely technical indicators. No unified definition is in operation. </i><i>The existing and used meanings of the term "impact" either are treated as a synonym of “influence” (the word that has no further definition!) or do not go beyond the concept of "strong impression", or coincide with the meaning of the term "pertinence", or refer to purely technical indicators. No unified definition is in operation. The Table </i><i>summarizes the above stated.</i>
DOI: 10.6084/m9.figshare.7477562.v3
title: Simulation results

description: Dataset as the supporting information of the manuscript: Intervention on default contagion under partial information in a financial network published by journal PLOS ONE. The spreadsheet contains two tables which includes, respectively, under the optimal and alternative intervention policies, the scaled number of interventions R/n, the scaled number of defaults D/n, the scaled process end time T/m and the objective function value for the number of nodes n = 5^4 ,6^4 ,...,10^4 and there are 100 runs for each n.
DOI: 10.7284/110805
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGL1303 using a Hawaii UHDAS instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110800
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1303 using a C&C C-Nav 3050 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110802
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1303 using a C&C C-Nav 2000 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477379
title: Additional file 2: of Implications for introgression: has selection for fast growth altered the size threshold for precocious male maturation in domesticated Atlantic salmon?

description: Dataset supporting the results. (XLSX 250 kb)
DOI: 10.7284/110803
title: Gravimeter data collected during research cruise MGL1303 using a Bell BGM-3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477379.v1
title: Additional file 2: of Implications for introgression: has selection for fast growth altered the size threshold for precocious male maturation in domesticated Atlantic salmon?

description: Dataset supporting the results. (XLSX 250 kb)
DOI: 10.6084/m9.figshare.7477511
title: Finance Minister.xlsx

description: Fig. 1: Gastrointestinal motilityFig. 3: Serum glucose and proteinFig. 4: Fecal starch, glucose, protein, and lipidFig. 5: Food intake
DOI: 10.6084/m9.figshare.7477511.v1
title: Okura et al JPS.xlsx

description: Fig. 1: Gastrointestinal motilityFig. 3: Serum glucose and proteinFig. 4: Fecal starch, glucose, protein, and lipidFig. 5: Food intake
DOI: 10.7284/110797
title: Gyrocompass data collected during research cruise MGL1303 using a Kongsberg Simrad GC80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477370
title: Additional file 8 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: Script to generate data files required for the DAWN data tracks. A script containing all the commands needed to generate all the data files used in DAWN. (SH 9667 kb)
DOI: 10.7284/110801
title: INS (Inertial Navigation System) data collected during research cruise MGL1303 using a Kongsberg Seapath 200 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477367
title: Additional file 7 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: ZIP file containing BED5 format files of high and low variant density regions. BED5 format file for each WGS accession. The score column (5th column) indicates if the feature (row) represents a region which has &gt;2*SD above (High) or below (Low) the mean variant density. (ZIP 526 kb)
DOI: 10.6084/m9.figshare.7477361
title: Additional file 6 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: ZIP file containing BED5 format files of high and low read coverage regions. BED5 format file for each WGS accession. The score column (5th column) indicates if the feature (row) represents a region which has &gt;2*SD above (High) or below (Low) the mean read coverage. (ZIP 1455 kb)
DOI: 10.6084/m9.figshare.7477367.v1
title: Additional file 7 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: ZIP file containing BED5 format files of high and low variant density regions. BED5 format file for each WGS accession. The score column (5th column) indicates if the feature (row) represents a region which has &gt;2*SD above (High) or below (Low) the mean variant density. (ZIP 526 kb)
DOI: 10.6084/m9.figshare.7477370.v1
title: Additional file 8 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: Script to generate data files required for the DAWN data tracks. A script containing all the commands needed to generate all the data files used in DAWN. (SH 9667 kb)