cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6488066
title: Additional file 3 of To what extent do mesophotic coral ecosystems and shallow reefs share species of conservation interest? A systematic review

description: Additional file 3. Datafile. Data extracted and summarised for fitting of a meta-analytic model.
DOI: 10.6084/m9.figshare.6488066.v1
title: MOESM3 of To what extent do mesophotic coral ecosystems and shallow reefs share species of conservation interest? A systematic review

description: Additional file 3. Datafile. Data extracted and summarised for fitting of a meta-analytic model.
DOI: 10.6084/m9.figshare.6487907
title: Additional file 5: of Molecular mechanism of seed dormancy release induced by fluridone compared with cod stratification in Notopterygium incisum

description: Table S2. KEGG classification of assembled unigenes in N. incisum. (XLSX 137Â kb)
DOI: 10.6084/m9.figshare.6487907.v1
title: Additional file 5: of Molecular mechanism of seed dormancy release induced by fluridone compared with cod stratification in Notopterygium incisum

description: Table S2. KEGG classification of assembled unigenes in N. incisum. (XLSX 137Â kb)
DOI: 10.6084/m9.figshare.6487886
title: Additional file 8 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S7. Genes located on rarely mutated chromosomal arms with strong impact on metabolic pathways. (XLS 187 kb)
DOI: 10.6084/m9.figshare.6487886.v1
title: Additional file 8 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S7. Genes located on rarely mutated chromosomal arms with strong impact on metabolic pathways. (XLS 187 kb)
DOI: 10.6084/m9.figshare.6487871
title: Additional file 2: of Cross-cultural comparison of plant use knowledge in Baitadi and Darchula districts, Nepal Himalaya

description: Socioeconomic variables and their analyses. (CSV 13Â kb)
DOI: 10.6084/m9.figshare.6487871.v1
title: Additional file 2: of Cross-cultural comparison of plant use knowledge in Baitadi and Darchula districts, Nepal Himalaya

description: Socioeconomic variables and their analyses. (CSV 13Â kb)
DOI: 10.6084/m9.figshare.6487868
title: Additional file 7 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S6. Genes located on rarely mutated chromosomal arms with strong impact on signaling pathways. (XLS 187 kb)
DOI: 10.6084/m9.figshare.6487868.v1
title: Additional file 7 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S6. Genes located on rarely mutated chromosomal arms with strong impact on signaling pathways. (XLS 187 kb)
DOI: 10.6084/m9.figshare.6487853
title: Additional file 6 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S5. Genes located on 1p/19q with strong impact on metabolic pathways. (XLS 115 kb)
DOI: 10.6084/m9.figshare.6487853.v1
title: Additional file 6 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S5. Genes located on 1p/19q with strong impact on metabolic pathways. (XLS 115 kb)
DOI: 10.6084/m9.figshare.6487850
title: Additional file 1: of Cross-cultural comparison of plant use knowledge in Baitadi and Darchula districts, Nepal Himalaya

description: Species use reports and IASc at district level. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.6487850.v1
title: Additional file 1: of Cross-cultural comparison of plant use knowledge in Baitadi and Darchula districts, Nepal Himalaya

description: Species use reports and IASc at district level. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.6487847
title: Additional file 1: of Colposcopy telemedicine: live versus static swede score and accuracy in detecting CIN2+, a cross-sectional pilot study

description: License reprint Swede Score Model Agreement between University of Bern, Institute of Social and Preventative Medicine -- Katayoun Taghavi (“You”) and Wolters Kluwer Health, Inc. (“Wolters Kluwer Health, Inc.”) consisting of license details and the terms and conditions provided by Wolters Kluwer Health, Inc. and Copyright Clearance Center. (HTM 23 kb)
DOI: 10.6084/m9.figshare.6487847.v1
title: Additional file 1: of Colposcopy telemedicine: live versus static swede score and accuracy in detecting CIN2+, a cross-sectional pilot study

description: License reprint Swede Score Model Agreement between University of Bern, Institute of Social and Preventative Medicine -- Katayoun Taghavi (“You”) and Wolters Kluwer Health, Inc. (“Wolters Kluwer Health, Inc.”) consisting of license details and the terms and conditions provided by Wolters Kluwer Health, Inc. and Copyright Clearance Center. (HTM 23 kb)
DOI: 10.6084/m9.figshare.6487832
title: Additional file 5 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S4. Genes located on 1p/19q with strong impact on signaling pathways. (XLS 115 kb)
DOI: 10.6084/m9.figshare.6487832.v1
title: Additional file 5 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S4. Genes located on 1p/19q with strong impact on signaling pathways. (XLS 115 kb)
DOI: 10.6084/m9.figshare.6487811
title: Additional file 1: of Molecular mechanism of seed dormancy release induced by fluridone compared with cod stratification in Notopterygium incisum

description: Table S1. Summary of functional annotation of genes in N. incisum seeds. (XLSX 40668Â kb)
DOI: 10.6084/m9.figshare.6487811.v1
title: Additional file 1: of Molecular mechanism of seed dormancy release induced by fluridone compared with cod stratification in Notopterygium incisum

description: Table S1. Summary of functional annotation of genes in N. incisum seeds. (XLSX 40668Â kb)
DOI: 10.6084/m9.figshare.6487805
title: Additional file 4 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S3. Differentially expressed genes between oligodendrogliomas with 1p/19q co-deletion and normal brain tissue. (XLS 2240 kb)
DOI: 10.6084/m9.figshare.6487805.v1
title: Additional file 4 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S3. Differentially expressed genes between oligodendrogliomas with 1p/19q co-deletion and normal brain tissue. (XLS 2240 kb)
DOI: 10.6084/m9.figshare.6487793
title: Additional file 3 of DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data

description: Raw predicted cofactors interaction graphs from Ingenuity Pathway Analysis (IPA). Files with ’_high’ suffix (for high confidence) represent data from “Ingenuity expert findings” and “Experimentally observed” databases. Files with ’_low’ suffix (for low confidence), represent data from all IPA databases. (ZIP 2519 kb)
DOI: 10.6084/m9.figshare.6487793.v1
title: Additional file 3 of DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data

description: Raw predicted cofactors interaction graphs from Ingenuity Pathway Analysis (IPA). Files with ’_high’ suffix (for high confidence) represent data from “Ingenuity expert findings” and “Experimentally observed” databases. Files with ’_low’ suffix (for low confidence), represent data from all IPA databases. (ZIP 2519 kb)
DOI: 10.6084/m9.figshare.6487790
title: Additional file 10: of Molecular mechanism of seed dormancy release induced by fluridone compared with cod stratification in Notopterygium incisum

description: Table S3. The gene expression information of genes involved in ABA, GA, and SL biosynthesis and their expression under FL and CS treatments in N. incisum seeds. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6487790.v1
title: Additional file 10: of Molecular mechanism of seed dormancy release induced by fluridone compared with cod stratification in Notopterygium incisum

description: Table S3. The gene expression information of genes involved in ABA, GA, and SL biosynthesis and their expression under FL and CS treatments in N. incisum seeds. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6487754
title: Additional file 2 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S2. Gene expression data. (XLS 48300 kb)
DOI: 10.6084/m9.figshare.6487754.v1
title: Additional file 2 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S2. Gene expression data. (XLS 48300 kb)
DOI: 10.6084/m9.figshare.6487712
title: Additional file 1 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S1. Gene copy number data. (XLS 68300 kb)
DOI: 10.6084/m9.figshare.6487712.v1
title: Additional file 1 of Network-based analysis of oligodendrogliomas predicts novel cancer gene candidates within the region of the 1p/19q co-deletion

description: Table S1. Gene copy number data. (XLS 68300 kb)
DOI: 10.6084/m9.figshare.6486104
title: Business Formalisation in Vietnam

description: We estimate the impact of business formalisation using nationally representative panel data on businesses in Vietnam. Our data allows us to observe businesses for two surveys prior to obtaining a licence and hence to control for differential trends before formalisation. We find that obtaining a licence is not associated with an increase in profits or other business outcomes such as revenue, expenses, and employment once we control for differential trends. Controlling for trends is crucial, as estimates that ignore trends consistently find a larger positive association between becoming licensed and business performance. Our results suggest that inducing more businesses to register is unlikely to bring about large-scale changes for these businesses.
DOI: 10.6084/m9.figshare.6486104.v1
title: Business Formalisation in Vietnam

description: We estimate the impact of business formalisation using nationally representative panel data on businesses in Vietnam. Our data allows us to observe businesses for two surveys prior to obtaining a licence and hence to control for differential trends before formalisation. We find that obtaining a licence is not associated with an increase in profits or other business outcomes such as revenue, expenses, and employment once we control for differential trends. Controlling for trends is crucial, as estimates that ignore trends consistently find a larger positive association between becoming licensed and business performance. Our results suggest that inducing more businesses to register is unlikely to bring about large-scale changes for these businesses.
DOI: 10.6084/m9.figshare.6484646.v1
title: ChIP

description: To verify the direct activation of miR-92b from SP1, we performed ChIP assays with PCI-4A cells to respectively affirm the binding reaction of the 5 binding sites in miR-92b promoter region. The binding of each predicted sites were evaluated with 7 parallel groups: (A) experiment group: immunoprecipitated with SP1 antibody and amplified with targeted primers; (B) RT-Input1: without immunoprecipitation and amplified with targeted primers; (C) negative control group: immunoprecipitated with host IgG and amplified with targeted primers; (D) PCR negative control: using ddH<sub>2</sub>O as template and amplified with targeted primers; (E) positive control group: immunoprecipitated with RNA polymerase II and amplified with GAPDH primers; (F) RT-Input2: without immunoprecipitation and amplified with GAPDH primers; (G) WB-Input: western bloting SP1 protein expression in total DNA-protein crosslink.The results indicated that there was a significant enrichment of SP1 protein at the first 3 binding sites, whereas no obvious reaction was found in site 4 and site 5.
DOI: 10.6084/m9.figshare.6484082
title: cmod_ic.6.nc

description: example netcdf fokker planck data to be used in python notebook by cql3d reader.
DOI: 10.6084/m9.figshare.6484082.v2
title: cmod_ic.6.nc

description: example netcdf fokker planck data to be used in python notebook by cql3d reader.
DOI: 10.6084/m9.figshare.6484082.v1
title: cmod_ic.6.nc

description: example netcdf fokker planck data to be used in python notebook by cql3d reader.
DOI: 10.6084/m9.figshare.6484034
title: Theoretical ribosomal protein mass fingerprint of Aeromonas hydrophila

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Aeromonas hydrophila</i>.
DOI: 10.6084/m9.figshare.6484034.v1
title: Theoretical ribosomal protein mass fingerprint of Aeromonas hydrophila

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Aeromonas hydrophila</i>.
DOI: 10.6084/m9.figshare.6484031
title: Theoretical ribosomal protein mass fingerprint of Acinetobacter baumannii

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Acinetobacter baumannii.<br></i><br>
DOI: 10.6084/m9.figshare.6484028
title: Bash processing code and files

description: This is an annotated bash script corresponding to the containing project.
DOI: 10.6084/m9.figshare.6484031.v1
title: Theoretical ribosomal protein mass fingerprint of Acinetobacter baumannii

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Acinetobacter baumannii.<br></i><br>
DOI: 10.6084/m9.figshare.6484028.v1
title: Bash processing code and files

description: This is an annotated bash script corresponding to the containing project.
DOI: 10.6084/m9.figshare.6484025
title: Appendix data.xlsx

description: Appendix data. Taxonomic affiliation and nucleotide sequence of 16S rRNA gene OTUs
DOI: 10.6084/m9.figshare.6484022
title: DOGWOOD-LEAF-RESPONSE-TO-6.3mm-ONE-HOLE-PUNCH-TO-SIMULATE-PREDATION-LICOR-LI6800-CALIBRATION-DATA

description: LICOR Research is being conducted by Undergraduate Students of North Seattle College. Our team was formed by students of the UGR program who are interested in using the LICOR 6800 LICOR Device. Our purpose was to investigate the relationship between leaf assimilation, 1st in a natural environment with a control sample, and 2nd, with a known area of leaf removed. The intention of the experiment is to determine what types of change can be seen in our LICOR data. Data shows that our control sample shows highly efficient trends in assimilation when submitted to specific intensities of light from our LICOR Device. When submitted to artificial damage in the form of a removal of a 6mm area via 1-hole punch, LICOR data shows that immediately after damage is inflicted, the measured section of leaf with a hole loses all ability to use light as a stimulant for photosynthesis.
DOI: 10.23641/asha.6484001
title: "Do I sound straight?" (Kachel et al., 2018)

description: <b>Purpose: </b>This study aims to give an integrative answer on which speech stereotypes exist toward German gay and straight men, whether and how acoustic correlates of actual and perceived sexual orientation are connected, and how this relates to masculinity/femininity. Hence, it tests speech stereotype accuracy in the context of sexual orientation.<b>Method: </b>Twenty-five gay and 26 straight German speakers provided data for a fine-grained psychological self-assessment (e.g., masculinity/femininity) and explicit speech stereotypes. They were recorded for an extensive set of read and spontaneous speech samples using microphones and nasometry. Recordings were analyzed for a variety of acoustic parameters (e.g., fundamental frequency and nasalance). Seventy-four listeners categorized speakers as gay or straight on the basis of the same sentence.<b>Results: </b>Most relevant explicitly expressed speech stereotypes encompass voice pitch, nasality, chromaticity, and smoothness. Demonstrating implicit stereotypes, speakers were perceived as sounding straighter, the lower their median f0, center of gravity in /s/, and mean F2. However, based on actual sexual orientation, straight men only showed lower mean F1 than gay men. Additionally, we found evidence that actual masculinity/femininity and the degree of sexual orientation were reflected in gay and straight men’s speech. <b>Conclusion: </b>Implicit and explicit speech stereotypes about gay and straight men do not contain a kernel of truth, and differences within groups are more important than differences between them.<br><b>Supplemental Material S1. </b>Distribution of speakers regarding sexual orientation on Kinsey-like scale (modified version from Kinsey, Pomeroy, & Martin, 1948) in Sessions 1 and 2.<br><b>Supplemental Material S2. </b>Schematic sagittal view of the isolation plate and nasal and oral microphones. <br><b>Supplemental Material S3.</b> Spectrograms of the second syllable from two tokens of <i>getaucht</i> (“dived”) with (left) and without (right) a stretch of breathy voice following voice onset time (VOT). The breathy voiced stretch is annotated with VOT+.<br><b>Supplemental Material S4.</b> Online questionnaire.<br>Kachel, S., Simpson, A. P., & Steffens, M. C. (2018). “Do I sound straight?”: Acoustic correlates of actual and perceived sexual orientation and masculinity/femininity in men’s speech. <i>Journal of Speech, Language, and Hearing Research, 61,</i> 1560–1578.<i> </i>https://doi.org/10.1044/2018_JSLHR-S-17-0125<br>
DOI: 10.6084/m9.figshare.6483956
title: LifeTables

description: Lifetables Roman Hispania, Africa Proconsularis, Mauretania Caesariensis, Numidia, Apulia Calabria
DOI: 10.6084/m9.figshare.6483956.v1
title: LifeTables

description: Lifetables Roman Hispania, Africa Proconsularis, Mauretania Caesariensis, Numidia, Apulia Calabria
DOI: 10.6084/m9.figshare.6483932
title: Economic decisions on the decisions of Wojas S.A. on the basis of economic analysis using microeconomic and macroeconomic data

description: Economic decisions on the decisions of Wojas S.A. on the basis of economic analysis using microeconomic and macroeconomic data
DOI: 10.6084/m9.figshare.6483788
title: LEPA-MX1-DC-POWER-SUPPLY-12V-CONVERSION

description: Conversion Process for Lepa MX1 Computer Power Supply.
DOI: 10.6084/m9.figshare.6483788.v1
title: LEPA-MX1-DC-POWER-SUPPLY-12V-CONVERSION

description: Conversion Process for Lepa MX1 Computer Power Supply.
DOI: 10.6084/m9.figshare.6483782
title: USING-A-SOUND-STORM-LAB-EV-1600-WATT-SIGNAL-AMP-FOR-ELECTROACOUSTIC-PROPULSION-RESEARCH

description: Data, schematics and documentary files for the SSL EV.1600 audio amplifier and it's use in electroacoustic propulsion research.
DOI: 10.6084/m9.figshare.6483782.v1
title: USING-A-SOUND-STORM-LAB-EV-1600-WATT-SIGNAL-AMP-FOR-ELECTROACOUSTIC-PROPULSION-RESEARCH

description: Data, schematics and documentary files for the SSL EV.1600 audio amplifier and it's use in electroacoustic propulsion research.
DOI: 10.6084/m9.figshare.6483779
title: Public-Chemistry-Reference-Database

description: A frequently uptaded Excel Database and open source graphing tools for chemistry calculations. This table is authored and managed by Cory Andrew Hofstad, an undergraduate researcher and cumputer tutor for the Seattle Colleges.
DOI: 10.6084/m9.figshare.6483761
title: Bayesian Inference for the One-Factor Copula Model

description: We develop efficient Bayesian inference for the one-factor copula model with two significant contributions over existing methodologies. First, our approach leads to straightforward inference on dependence parameters and the latent factor; only inference on the former is available under frequentist alternatives. Second, we develop a reversible jump Markov chain Monte Carlo algorithm that averages over models constructed from different bivariate copula building blocks. Our approach accommodates any combination of discrete and continuous margins. Through extensive simulations, we compare the computational and Monte Carlo efficiency of alternative proposed sampling schemes. The preferred algorithm provides reliable inference on parameters, the latent factor, and model space. The potential of the methodology is highlighted in an empirical study of 10 binary measures of socio-economic deprivation collected for 11,463 East Timorese households. The importance of conducting inference on the latent factor is motivated by constructing a poverty index using estimates of the factor. Compared to a linear Gaussian factor model, our model average improves out-of-sample fit. The relationships between the poverty index and observed variables uncovered by our approach are diverse and allow for a richer and more precise understanding of the dependence between overall deprivation and individual measures of well-being.
DOI: 10.6084/m9.figshare.6483758
title: Bayesian Model Selection for Exponential Random Graph Models via Adjusted Pseudolikelihoods

description: Models with intractable likelihood functions arise in areas including network analysis and spatial statistics, especially those involving Gibbs random fields. Posterior parameter estimation in these settings is termed a doubly intractable problem because both the likelihood function and the posterior distribution are intractable. The comparison of Bayesian models is often based on the statistical evidence, the integral of the un-normalized posterior distribution over the model parameters which is rarely available in closed form. For doubly intractable models, estimating the evidence adds another layer of difficulty. Consequently, the selection of the model that best describes an observed network among a collection of exponential random graph models for network analysis is a daunting task. Pseudolikelihoods offer a tractable approximation to the likelihood but should be treated with caution because they can lead to an unreasonable inference. This article specifies a method to adjust pseudolikelihoods to obtain a reasonable, yet tractable, approximation to the likelihood. This allows implementation of widely used computational methods for evidence estimation and pursuit of Bayesian model selection of exponential random graph models for the analysis of social networks. Empirical comparisons to existing methods show that our procedure yields similar evidence estimates, but at a lower computational cost. Supplementary material for this article is available online.