cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/th088235
title: TH088235
title: Fodinomyces

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th088236
title: TH088236
title: Coccocypselum

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th088237
title: TH088237
title: Syzygium

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th088238
title: TH088238
title: Otidea

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th088239
title: TH088239
title: Pseudoturritis

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th088240
title: TH088240
title: Antitrichia

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th088241
title: TH088241
title: Ruppia

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th088242
title: TH088242
title: Brachysporium

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.5061/dryad.g3h56b3/4
title: Artificial diet 2 hours

description: Results of Select Ion Monitoring of artificial diet after 2 hours at room temperature
DOI: 10.5061/dryad.g3h56b3/5
title: P3.3 ion chromatograms from individual moth

description: Example Ion chromatograms from a moth sample
DOI: 10.5061/dryad.g3h56b3/6
title: ion chromatograms from standards

description: Ion chromatograms from pyrazine standards
DOI: 10.5061/dryad.g3h56b3/7
title: 1 NG SBMP standard

description: Results of Select Ion Monitoring of ions 124.1, 151.1 and 138.1 on 1 NG of 2-sec-butyl-3-methoxypyrazine standard
DOI: 10.5061/dryad.g3h56b3/8
title: 1 NG IBMP standard

description: Results of Select Ion Monitoring of ions 124.1, 151.1 and 138.1 on 1 NG of 2-isobutyl-3-methoxypyrazine standard
DOI: 10.5061/dryad.gj3vj/4
title: Genera_SSU

description: Sequence counts (sheet 1) and taxonomic and functional classification (sheet 2) of genus-level taxa based on SSU rRNA reads. Classified using Silvamod taxonomy (CREST) and exported from MEGAN.
DOI: 10.5061/dryad.gj3vj/5
title: mRNA_MGRAST

description: SEED Subsystems classifications (sheet 1) and functional assignments (sheet 2) of mRNA reads, exported from MGRAST.
DOI: 10.5061/dryad.gp126fv/2
title: (Dryad Appendix)
DOI: 10.5061/dryad.gp47d91/1
title: table e-1

description: Performed CSF tests and surveillance data
DOI: 10.5061/dryad.gv89s53/3
title: Neurology-2017-861674-R2 Table e-2

description: Regions showing significant gray matter volume abnormalities at baseline between the subgroups of migraine patients and controls that were studied at the two study time points, as well as among different subgroups of migraineurs.
DOI: 10.5061/dryad.gv89s53/4
title: Neurology-2017-861674-R2 Figure e-1

description: Tensor-based and Voxel-based morphometry analysis: schematic representations of the steps included in the longitudinal and cross-sectional analyses.
DOI: 10.5061/dryad.hm83f7t/1
title: Wasp y-choice data and morphological measurements

description: This file includes a brief summary of the y-choice experiments plus the raw data, as well as morphological measurements of wasps used in this study.
DOI: 10.5061/dryad.hm83f7t/2
title: Volatile data (clean)

description: This is the volatile data after filtering control compounds and samples
DOI: 10.5061/dryad.hm83f7t/3
title: Volatile data (raw)

description: Raw volatile data before conversion and filtering
DOI: 10.5061/dryad.jq344/1
title: SEAK_Male_SAM_Data

description: Male size at maturity data collected for golden king crab (GKC) in Southeast, Alaska, which includes management area, carapace length (CL), and carapace width (CW).
DOI: 10.5061/dryad.jq344/2
title: SEAK_Female_SAM_Data

description: Size at maturity data for golden king crab collected in Southeast, Alaska, by management area, carapace length (CL), and female maturity.
DOI: 10.5061/dryad.jq344/3
title: SEAK GKC temp

description: Temperature data associated with golden king crab in Southeast Alaska, collected by management area, date, time, temperature reading.
DOI: 10.5061/dryad.jq344/4
title: SEAK GKC Depth

description: Observed depth of golden king crab captures in Southeast, Alaska.
DOI: 10.5061/dryad.jq344/5
title: Male GKC legal spine lengths

description: Male golden king crab spine length data collected in Southeast, Alaska by management area.  Measurements include: carapace length (CL), carapace width with and without spines.
DOI: 10.5061/dryad.jq344/6
title: 1972-2014 Port Sampling data in CW

description: Southeast Alaska golden king crab port sampling data used to determine the impacts of different legal size scenarios for each management area.
DOI: 10.5061/dryad.jq344/7
title: Example male GKC SMM analysis R script

description: This is example code to conduct size at morphometric maturity analysis (SMM) and plot results using the SiZer extension package.
DOI: 10.5061/dryad.t8h2j0b/1
title: Species, latitude (°), samplings, average snout vent length (SVL: mm), brain size (mm3) and volume of different brain regions (mm3), age at sexual maturity (years), longevity (mean; years), sperm length (μm), testes mass (mg) and egg size (mm).
DOI: 10.5061/dryad.070jc/1
title: Cocktail Party Dataset
DOI: 10.5061/dryad.070jc/2
title: N400 Dataset
DOI: 10.5061/dryad.070jc/3
title: Natural Speech - Reverse Dataset
DOI: 10.5061/dryad.070jc/4
title: Natural Speech Dataset
DOI: 10.5061/dryad.0dm8mv1/1
title: Microsatellite genotypes for Aegithalos caudatus

description: Contains individual genotypes: see ReadMe file
DOI: 10.5061/dryad.0dm8mv1/2
title: Microsatellite genotypes and annual breeding locations of Aegithalos caudatus

description: Contains genotypes and annual nest locations of breeding adults: See ReadMe file
DOI: 10.5061/dryad.316c7h6/1
title: in situ hybridization pictures

description: A collection of 3-5 ISH pictures for each transcript.
DOI: 10.5061/dryad.339k00b/10
title: otus_aligned

description: Alignment for phylogenetic tree and downstream analyses
DOI: 10.5061/dryad.339k00b/8
title: filtered_otu_table

description: OTU table was filtered to eliminate reads binning to mitochondria and chloroplasts, and samples with less than 615 reads.
DOI: 10.5061/dryad.339k00b/9
title: rep_phylo

description: Phylogenetic tree produced in Qiime for downstream analyses
DOI: 10.5061/dryad.3mn2402/1
title: Sequence alignment and Beast input file

description: XML file formatted to execute with Beast v1.8.4.  This file was ran to generate Figure 2.
DOI: 10.5061/dryad.3mn2402/2
title: Beast output tree

description: Tree file of the 95% HPD tree, which is the result of the Beast analysis.  File opens best in FigTree. Tree file used in Figures 2 and S2.
DOI: 10.5061/dryad.3mn2402/3
title: Alignment file

description: Nexus alignment file formatted for MrBayes, including partition boundaries.
DOI: 10.5061/dryad.3mn2402/4
title: SlidingWindow.R

description: R code to conduct sliding window analysis.  Code is duplicated at https://github.com/johnjschenk/Rcode
DOI: 10.5061/dryad.3mn2402/5
title: SlidingWindowSimulations.R

description: R code written to generate simulated data to compare again empirical data.  Code can also be accessed at https://github.com/johnjschenk/Rcode.
DOI: 10.5061/dryad.41pj936/1
title: HU data v5
DOI: 10.5061/dryad.5401972/1
title: Physiology_Environmental_Data

description: This file includes leaf physiology data for eight plant species and corresponding environmental data collected on the same day as physiology measurements.
DOI: 10.5061/dryad.5401972/2
title: Seasonal_Environmental_Data

description: This file includes environmental data collected daily during the 2014 and 2015 growing seasons.
DOI: 10.5061/dryad.5n42p7t/1
title: Hennin-Fattening_Rate_and_Clutch_Size_in_Common_Eider

description: These data were collected from 2003-2014 at East Bay Island, Southampton Island, Nunavut, Canada. These are data from pre-recruiting, wild-living female common eiders with metrics collected at arrival on the breeding grounds, reproductive outputs, and physiological fattening measured in the lab.
DOI: 10.5061/dryad.6rs00nn/8
title: Supplementary Table 6

description: Comparison of characters between common garden and herbarium plants of Myosotis pygmaea species group individuals. For explanation of character numbers see Table 2. (R) = reproductive, (V) = vegetative.
DOI: 10.5061/dryad.6rs00nn/9
title: Supplementary Table 7

description: Additional comparisons of herbarium data between individuals of the Myosotis pygmaea species group, highlighting three of the characters that found significant differences between species in the common garden data, as well as varying significantly between the herbarium and common garden datasets (Table S6). For explanation of character numbers see Table 2. P values that are significant at P &lt; 0.01 are denoted with an asterisk (“*”), for calyx length at fruiting between M. drucei and M. pygmaea compare with Table S4.
DOI: 10.5061/dryad.8b0s04t/1
title: Falco mexicanus SNP genotypes

description: 103 Prairie falcons were genotyped at 143 SNPs.  Sampling locations included the San Francisco East Bay Area, Pinnacles National Park, the Mojave Desert, Northern California and the Snake River Birds of Prey National Conservation Area in Idaho.  SNPs are coded as follows: Adenine=1, Cytosine=2, Guanine=3, Thymine=4, missing data = 0.
DOI: 10.5061/dryad.8b0s04t/2
title: Falco mexicanus genome annotation

description: 16,320 genes were annotated in the Falco mexicanus genome, this is the .gff file associated with the annotations.
DOI: 10.5061/dryad.8pt2c/5
title: PFGE_Table4

description: Pulsed-field gel electrophoresis of E. faecium blood isolates of patients with breakthrough bacteremia with VSE, VVE or VRE (see Table 4 in manuscript).
DOI: 10.5061/dryad.903vs08/1
title: Dryad_Meineke_EcolMon2018
DOI: 10.5061/dryad.c3k48j0/1
title: Simulated data sets for each of the five scenarios

description: The zip file contains 5 folders, each corresponding to one of the five scenarios presented in the manuscript. Folders contain 100 simulated data frames, i.e., replicates. In S1, simulated b_average equals - 0.08, in S2, b_average = - 0.05, in S3, b_average = 0, in S4, b_average = + 0.05, and in S5, b_average = + 0.08. Column names are explained in the file which is uploaded separately.
DOI: 10.5061/dryad.c3k48j0/2
title: Column_names_explained

description: The file explains column names of data sets in S1-S5
DOI: 10.5061/dryad.db35344/1
title: Mistreatment data

description: The survey was conducted (April-May 2013) in 14 districts across Pakistan. A total of 1,334 women who had given birth at home or in a healthcare facility over the past 12 months were interviewed.
DOI: 10.5061/dryad.dp8b07r/1
title: Raw data (.S2R/.smr format) with associated individual matlab files

description: Raw data files of the entire electrically stimulated data collection process for each digit. Exported individual subject matlab files of separate digit stimulations and responses.
DOI: 10.5061/dryad.dp8b07r/2
title: Sub02
DOI: 10.5061/dryad.dp8b07r/3
title: Sub03
DOI: 10.5061/dryad.dp8b07r/4
title: Sub04
DOI: 10.5061/dryad.dp8b07r/5
title: Sub05
DOI: 10.5061/dryad.g3h56b3/10
title: Artificial diet individual P4.2

description: Results of Select Ion Monitoring of ions 124.1, 138.1 and 151.1 of moth P4.2
DOI: 10.5061/dryad.g3h56b3/11
title: Artificial diet individual P3.3

description: Results of Select Ion Monitoring of ions 124.1, 138.1 and 151.1 of moth P3.3
DOI: 10.5061/dryad.g3h56b3/12
title: Artificial diet individual P1.1

description: Results of Select Ion Monitoring of ions 124.1, 138.1 and 151.1 of moth P1.1
DOI: 10.5061/dryad.g3h56b3/13
title: Individual dandelion C2.3

description: Results of Select Ion Monitoring of ions 124.1, 138.1 and 151.1 of moth C2.3
DOI: 10.5061/dryad.g3h56b3/14
title: Individual dandelion C6.3

description: Results of Select Ion Monitoring of ions 124.1, 138.1 and 151.1 of moth C6.3
DOI: 10.5061/dryad.g3h56b3/9
title: Individual dandelion C6.5

description: Results of Select Ion Monitoring of ions 124.1, 138.1 and 151.1 of moth C6.5
DOI: 10.5061/dryad.gp126fv/3
title: (Dryad Figure 1, Table 1-3)
DOI: 10.5061/dryad.hj029/1
title: adk alignment
DOI: 10.5061/dryad.hj029/2
title: icdA alignment
DOI: 10.5061/dryad.hj029/3
title: lipL41 alignment
DOI: 10.5061/dryad.hj029/4
title: rrs2 alignment
DOI: 10.5061/dryad.hj029/5
title: secY alignment
DOI: 10.5061/dryad.hk64f/1
title: Model of bacteriophage evolution

description: Implementation of the model in Matlab. The model is a 3-equations model, combined with appropriated boundary and initial conditions (based on biological background and on the bibliography). Then, the solution is derived using an explicit method.
DOI: 10.5061/dryad.hk64f/2
title: BPvect_Robin

description: Matlab code. Evolution of marine bacteriophage modeled by a 3-equation system, solved explicitely applying Robin boundary conditions for infected cell population and Neumann boundary conditions on the virus.
DOI: 10.5061/dryad.hm83f7t/4
title: Sequence alignment used for the phylogeny
DOI: 10.5061/dryad.hm83f7t/5
title: VCF file for section Papuacyse used for STRUCTRUE
DOI: 10.5061/dryad.hm83f7t/6
title: VCF file for F. trichocerasa used for STRUCTURE
DOI: 10.5061/dryad.ks67ft7/1
title: Field transplant data

description: Contains the fitness and development rate data for all parental ecotypes and populations included in the reciprocal transplant. Please ee the readme file for description of column names.
DOI: 10.5061/dryad.st1bs/1
title: Data file

description: Total (summed) electronic and paper Epworth Sleepiness Scale (ESS) scores for each study participant.
DOI: 10.5061/dryad.tg5f2hp/1
title: vz2018.association.analysis.result.summary

description: Results of a genome-wide association study to identify genetic modifiers of Huntington's disease in Venezuelans.
DOI: 10.5061/dryad.vt169tn/1
title: Dataset_JAE-201700618

description: Data used in the paper "The influence of early-life allocation to antlers on male performance during adulthood: evidence from contrasted populations of a large herbivore"
DOI: 10.5061/dryad.068d0d0/1
title: AtlanticOcean_100m_contigs.fa

description: Complete assembly of the Moca1 metagenome (SRA accession: SRP081826). Metagenome was derived from Atlantic Ocean sampled at 100m depth. See the associated publication for technical details.
DOI: 10.5061/dryad.068d0d0/10
title: alphaproteobacteria_SR4recoded.aln

description: SR4 recoded, concatenated supermatrix alignment of 72 genes conserved among alphaproteobacteria. See associated publication for technical details on how this alignment was prepared.
DOI: 10.5061/dryad.068d0d0/2
title: AtlanticOcean_776m_contigs.fa

description: Complete assembly of the Moca2 metagenome (SRA accession: SRP081826). Metagenome was derived from Atlantic Ocean sampled at 776m depth. See the associated publication for technical details.
DOI: 10.5061/dryad.068d0d0/3
title: AtlanticOcean_2745m_contigs.fa

description: Complete assembly of the Moca3 metagenome (SRA accession: SRP081826). Metagenome was derived from Atlantic Ocean sampled at 2745m depth. See the associated publication for technical details.
DOI: 10.5061/dryad.068d0d0/4
title: AtlanticOcean_5002m_contigs.fa

description: Complete assembly of the Moca4 metagenome (SRA accession: SRP081826). Metagenome was derived from Atlantic Ocean sampled at 5002m depth. See the associated publication for technical details.
DOI: 10.5061/dryad.068d0d0/5
title: PacificOcean_115m_contigs.fasta

description: Complete assembly of the Tara Oceans metagenome (SRA accession: ERR594304). Metagenome was derived from Pacific Ocean sampled at 115m depth. See the associated publication for technical details.
DOI: 10.5061/dryad.068d0d0/6
title: PacificOcean_5m_contigs.fa

description: Complete assembly of the Tara Oceans metagenome (SRA accession: ERR594339). Metagenome was derived from Pacific Ocean sampled at 5m depth. See the associated publication for technical details.
DOI: 10.5061/dryad.068d0d0/7
title: PacificOcean_140m_contigs.fa

description: Complete assembly of the Tara Oceans metagenome (SRA accession: ERR599156). Metagenome was derived from Pacific Ocean sampled at 140m depth. See the associated publication for technical details.
DOI: 10.5061/dryad.068d0d0/8
title: alphaproteobacteria_untreated.aln

description: Concatenated supermatrix alignment of 72 genes conserved among alphaproteobacteria. See associated publication for technical details on how this alignment was prepared.
DOI: 10.5061/dryad.070jc/5
title: Speech in Noise Dataset
DOI: 10.5061/dryad.0dm8mv1/3
title: Social pedigree for Aegithalos caudatus

description: Contains social pedigree: see ReadMe file.
DOI: 10.5061/dryad.2t847j8/1
title: Measurements of Anisian ammonoid from British Columbia
DOI: 10.5061/dryad.5f24ks4/3
title: OTU table, taxonomy, and sample data for doi:10.5061/dryad.5f24ks4

description: This .RData image contains the Operational Taxonomic Unit (OTU) tables, OTU taxonomy, and sample metadata for each of the taxonomic groups and guilds analyzed in our paper. A phyloseq object combining the three datasets for fungi, bacteria, archaea, arbuscular mycorrhizal fungi, ectomycorrhizal fungi, saprotrophic fungi and pathogenic fungi are also provided. Please see the README file for descriptions of the data files.
DOI: 10.5061/dryad.5gs6p/2
title: Supplementary Material

description: Supplementary material S1 - Table S1: Specimen numbers, taxonomic authorities, and institutional abbreviations. Supplementary material S2: Landmarking procedure, replacement taxa, and supplementary figures. Supplementary material S3: Landmark coordinates of all taxa included in the study (.tps format). Supplementary material S4 - Table S2: Ecology of all the taxa included in the study and literature sources. Supplementary material S5: Scripts used to run the analyses in R.
DOI: 10.5061/dryad.7d467b6/2
title: WythamCNV_clean

description: A list of CNVs in the filtered Wytham Woods dataset
DOI: 10.5061/dryad.7d467b6/3
title: WythamCNV

description: A list of CNVs in the unfiltered Wytham Woods dataset
DOI: 10.5061/dryad.7d467b6/4
title: Plink .bed file used for Exploratory Behaviour analysis

description: Contains data on 415 birds typed at 459,502 autosomal SNPs
DOI: 10.5061/dryad.7d467b6/5
title: Plink .fam file used for Exploratory Behaviour analysis

description: Contains ID information for 415 birds
DOI: 10.5061/dryad.7d467b6/6
title: Plink .bim file used for Exploratory Behaviour analysis

description: Contains marker information for 459,502 autosomal SNPs
DOI: 10.5061/dryad.8b0s04t/3
title: Falco mexicanus mitochondrial genome assembly

description: The F. mexicanus mitochondrial genome was assembled using MITObim vs. 1.6.  The genome assembly is 17,117 bp in length and characterized by 13 protein-coding genes, two ribosomal subunit genes (rRNA), 22 transfer RNA genes and a control region.
DOI: 10.5061/dryad.8b0s04t/4
title: Falco mexicanus genome annotation - protein sequences

description: 16,320 genes were annotated in the Falco mexicanus genome, this is the .fasta file with predicted protein sequences.
DOI: 10.5061/dryad.8b0s04t/5
title: Falco mexicanus genome assembly scaffolds

description: The Falco mexicanus draft genome was generated from paired-end, mate-paired and long reads using ABySS vs. 1.5.2 and SPAdes 3.1.1.  This file includes the scaffolds greater than 10 kb in length.
DOI: 10.5061/dryad.bt51481/1
title: Data from: Experimental increase in baseline corticosterone level reduces oxidative damage and enhances innate immune response
DOI: 10.5061/dryad.c377tq8/1
title: Aliyu_2017_Biotropica_CarapaCondMut_DATA_Phenology_LargeSeededSpecies

description: Fruiting phenology of selected large-seeded and moderately large-seeded tree species in Ngel Nyaki during the 2011 sampling year of the study.