cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11406003.v1
title: MOESM1 of Proteomic analysis of the second-generation merozoites of Eimeria tenella under nitromezuril and ethanamizuril stress

description: Additional file 1: Table S1. Protein identification of the second-generation merozoites of E. tenella (non-treated and treated with NZL/EZL). Abbreviations: C, C-group; N, N-group; E, E-group.
DOI: 10.6084/m9.figshare.25002077.v1
title: Ultrasound-Activated Piezo-Hot Carriers Trigger Tandem Catalysis Coordinating Cuproptosis-Like Bacterial Death Against Implant Infections

description: The Source data file contained the ﬁndings within the article and the Supplementary Information.
DOI: 10.6084/m9.figshare.25002077
title: Ultrasound-Activated Piezo-Hot Carriers Trigger Tandem Catalysis Coordinating Cuproptosis-Like Bacterial Death Against Implant Infections

description: The Source data file contained the ﬁndings within the article and the Supplementary Information.
DOI: 10.6084/m9.figshare.11406012
title: MOESM2 of Proteomic analysis of the second-generation merozoites of Eimeria tenella under nitromezuril and ethanamizuril stress

description: Additional file 2: Table S2. Peptide identification by LC-MS/MS analysis of the second-generation merozoites of E. tenella. Abbreviations: C, C-group; N, N-group; E, E-group.
DOI: 10.6084/m9.figshare.11406012.v1
title: MOESM2 of Proteomic analysis of the second-generation merozoites of Eimeria tenella under nitromezuril and ethanamizuril stress

description: Additional file 2: Table S2. Peptide identification by LC-MS/MS analysis of the second-generation merozoites of E. tenella. Abbreviations: C, C-group; N, N-group; E, E-group.
DOI: 10.6084/m9.figshare.11406018
title: MOESM2 of The evolutionary history of the sucrose synthase gene family in higher plants

description: Additional file 2: Figure S2. Intron/exon structural organization of angiosperms SUS genes. Blue boxes denote exons within coding regions, and the gray lines connecting them represent introns. Boxes of other colors represent fused exons, and the numbers above them indicate which exons are fused. Red boxes indicate the splitting of the exons. Due to the complexity of the 3â€² end of the SUS III subfamily genes, we do not show the fusion of their exons.
DOI: 10.6084/m9.figshare.11406018.v1
title: MOESM2 of The evolutionary history of the sucrose synthase gene family in higher plants

description: Additional file 2: Figure S2. Intron/exon structural organization of angiosperms SUS genes. Blue boxes denote exons within coding regions, and the gray lines connecting them represent introns. Boxes of other colors represent fused exons, and the numbers above them indicate which exons are fused. Red boxes indicate the splitting of the exons. Due to the complexity of the 3â€² end of the SUS III subfamily genes, we do not show the fusion of their exons.
DOI: 10.6084/m9.figshare.11406024
title: MOESM3 of Proteomic analysis of the second-generation merozoites of Eimeria tenella under nitromezuril and ethanamizuril stress

description: Additional file 3: Table S3. Protein quantification and difference analysis of the second-generation merozoites of E. tenella. Table S4. The significant differences in analysis of proteins of the second-generation merozoites of E. tenella treated with NZL. Table S5. Protein quantification and differences in analysis of the second-generation merozoites of E. tenella. Table S6. The significant differences in analysis of proteins of the second-generation merozoites of E. tenella treated with EZL. Abbreviations: C, C-group; N, N-group; E, E-group.
DOI: 10.6084/m9.figshare.11406024.v1
title: MOESM3 of Proteomic analysis of the second-generation merozoites of Eimeria tenella under nitromezuril and ethanamizuril stress

description: Additional file 3: Table S3. Protein quantification and difference analysis of the second-generation merozoites of E. tenella. Table S4. The significant differences in analysis of proteins of the second-generation merozoites of E. tenella treated with NZL. Table S5. Protein quantification and differences in analysis of the second-generation merozoites of E. tenella. Table S6. The significant differences in analysis of proteins of the second-generation merozoites of E. tenella treated with EZL. Abbreviations: C, C-group; N, N-group; E, E-group.
DOI: 10.6084/m9.figshare.11406069
title: MOESM9 of The evolutionary history of the sucrose synthase gene family in higher plants

description: Additional file 9: Table S4. Estimates of Ka/Ks (ω) values of three domains of SUS genes.
DOI: 10.6084/m9.figshare.11406069.v1
title: MOESM9 of The evolutionary history of the sucrose synthase gene family in higher plants

description: Additional file 9: Table S4. Estimates of Ka/Ks (ω) values of three domains of SUS genes.
DOI: 10.6084/m9.figshare.25272262
title: The protein sequences of 215 insects.

description: The protein sequences of 215 insects used in the identification of the HGT-aquired genes.
DOI: 10.6084/m9.figshare.25037599
title: Dataset_S5.xlsx from The causes of species richness patterns among clades

description: Two major types of species richness patterns are spatial (e.g. the latitudinal diversity gradient) and clade-based (e.g. the dominance of angiosperms among plants). Studies have debated whether clade-based richness patterns are explained primarily by larger clades having faster rates of species accumulation (speciation minus extinction over time; diversification-rate hypothesis) or by simply being older (clade-age hypothesis). However, these studies typically compared named clades of the same taxonomic rank, such as phyla and families. This study design is potentially biased against the clade-age hypothesis, since clades of the same rank may be more similar in age than randomly selected clades. Here, we analyse the causes of clade-based richness patterns across the tree of life using a large-scale, time-calibrated, species-level phylogeny and random sampling of clades. We find that within major groups of organisms (animals, plants, fungi, bacteria, archaeans), richness patterns are most strongly related to clade age. Nevertheless, weaker relationships with diversification rates are present in animals and plants. These overall results contrast with similar large-scale analyses across life based on named clades, which showed little effect of clade age on richness. More broadly, these results help support the overall importance of time for explaining diverse types of species richness patterns.
DOI: 10.6084/m9.figshare.25037599.v1
title: Dataset_S5.xlsx from The causes of species richness patterns among clades

description: Two major types of species richness patterns are spatial (e.g. the latitudinal diversity gradient) and clade-based (e.g. the dominance of angiosperms among plants). Studies have debated whether clade-based richness patterns are explained primarily by larger clades having faster rates of species accumulation (speciation minus extinction over time; diversification-rate hypothesis) or by simply being older (clade-age hypothesis). However, these studies typically compared named clades of the same taxonomic rank, such as phyla and families. This study design is potentially biased against the clade-age hypothesis, since clades of the same rank may be more similar in age than randomly selected clades. Here, we analyse the causes of clade-based richness patterns across the tree of life using a large-scale, time-calibrated, species-level phylogeny and random sampling of clades. We find that within major groups of organisms (animals, plants, fungi, bacteria, archaeans), richness patterns are most strongly related to clade age. Nevertheless, weaker relationships with diversification rates are present in animals and plants. These overall results contrast with similar large-scale analyses across life based on named clades, which showed little effect of clade age on richness. More broadly, these results help support the overall importance of time for explaining diverse types of species richness patterns.
DOI: 10.6084/m9.figshare.11406168
title: MOESM5 of A comprehensive proteomics profiling identifies NRP1 as a novel identity marker of human bone marrow mesenchymal stromal cell-derived small extracellular vesicles

description: Additional file 5: Table S2. TMT labelled MS-based proteomic analysis of the hBM-MSC-EV 2-fold enriched dataset.
DOI: 10.6084/m9.figshare.11406168.v1
title: MOESM5 of A comprehensive proteomics profiling identifies NRP1 as a novel identity marker of human bone marrow mesenchymal stromal cell-derived small extracellular vesicles

description: Additional file 5: Table S2. TMT labelled MS-based proteomic analysis of the hBM-MSC-EV 2-fold enriched dataset.
DOI: 10.6084/m9.figshare.11406174
title: MOESM6 of A comprehensive proteomics profiling identifies NRP1 as a novel identity marker of human bone marrow mesenchymal stromal cell-derived small extracellular vesicles

description: Additional file 6: Table S3. EV proteins of the top 100 Exocarta database identified in the 270 protein hBM-MSC-EV dataset.
DOI: 10.6084/m9.figshare.11406174.v1
title: MOESM6 of A comprehensive proteomics profiling identifies NRP1 as a novel identity marker of human bone marrow mesenchymal stromal cell-derived small extracellular vesicles

description: Additional file 6: Table S3. EV proteins of the top 100 Exocarta database identified in the 270 protein hBM-MSC-EV dataset.
DOI: 10.5517/ccdc.csd.cc2hwtnw
title: CCDC 2320649: Experimental Crystal Structure Determination

description: Related Article: Amy L. Knodel, Issiah B. Lozada, Noah Martens, David E. Herbert|2024|Polyhedron|251|116855|doi:10.1016/j.poly.2024.116855
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hwtpx
title: CCDC 2320650: Experimental Crystal Structure Determination

description: Related Article: Amy L. Knodel, Issiah B. Lozada, Noah Martens, David E. Herbert|2024|Polyhedron|251|116855|doi:10.1016/j.poly.2024.116855
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hwtqy
title: CCDC 2320651: Experimental Crystal Structure Determination

description: Related Article: Amy L. Knodel, Issiah B. Lozada, Noah Martens, David E. Herbert|2024|Polyhedron|251|116855|doi:10.1016/j.poly.2024.116855
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hwtrz
title: CCDC 2320652: Experimental Crystal Structure Determination

description: Related Article: Amy L. Knodel, Issiah B. Lozada, Noah Martens, David E. Herbert|2024|Polyhedron|251|116855|doi:10.1016/j.poly.2024.116855
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hx6yl
title: CCDC 2321030: Experimental Crystal Structure Determination

description: Related Article: Masahiro Ikeshita, Shinya Watanabe, Seika Suzuki, Shota Tanaka, Shingo Hattori, Kazuteru Shinozaki, Yoshitane Imai, Takashi Tsuno|2024|Chem.Commun.|60|2413|doi:10.1039/D3CC06293G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hx6zm
title: CCDC 2321031: Experimental Crystal Structure Determination

description: Related Article: Masahiro Ikeshita, Shinya Watanabe, Seika Suzuki, Shota Tanaka, Shingo Hattori, Kazuteru Shinozaki, Yoshitane Imai, Takashi Tsuno|2024|Chem.Commun.|60|2413|doi:10.1039/D3CC06293G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hx9d4
title: CCDC 2321106: Experimental Crystal Structure Determination

description: Related Article: Bakr F. Abdel-Wahab, Benson M. Kariuki, Gamal A. El-Hiti|2024|J.Mol.Struct.|1304|137748|doi:10.1016/j.molstruc.2024.137748
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hx9f5
title: CCDC 2321107: Experimental Crystal Structure Determination

description: Related Article: Bakr F. Abdel-Wahab, Benson M. Kariuki, Gamal A. El-Hiti|2024|J.Mol.Struct.|1304|137748|doi:10.1016/j.molstruc.2024.137748
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hx9g6
title: CCDC 2321108: Experimental Crystal Structure Determination

description: Related Article: Bakr F. Abdel-Wahab, Benson M. Kariuki, Gamal A. El-Hiti|2024|J.Mol.Struct.|1304|137748|doi:10.1016/j.molstruc.2024.137748
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.11406180
title: MOESM7 of A comprehensive proteomics profiling identifies NRP1 as a novel identity marker of human bone marrow mesenchymal stromal cell-derived small extracellular vesicles

description: Additional file 7: Table S4. TMT labels used for the mass spectrometry analysis of the hBM-MSCs and hBM-MSC-EV samples.
DOI: 10.5517/ccdc.csd.cc2hx9h7
title: CCDC 2321109: Experimental Crystal Structure Determination

description: Related Article: Bakr F. Abdel-Wahab, Benson M. Kariuki, Gamal A. El-Hiti|2024|J.Mol.Struct.|1304|137748|doi:10.1016/j.molstruc.2024.137748
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.11406180.v1
title: MOESM7 of A comprehensive proteomics profiling identifies NRP1 as a novel identity marker of human bone marrow mesenchymal stromal cell-derived small extracellular vesicles

description: Additional file 7: Table S4. TMT labels used for the mass spectrometry analysis of the hBM-MSCs and hBM-MSC-EV samples.
DOI: 10.5517/ccdc.csd.cc2hyw0c
title: CCDC 2322613: Experimental Crystal Structure Determination

description: Related Article: Wei Yang, Kun-Fang Zhu, Cheng-Tian Tao, Yong-Ming Yan, Yong-Xian Cheng|2024|Bioorg.Chem.|144|107169|doi:10.1016/j.bioorg.2024.107169
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hyw1d
title: CCDC 2322614: Experimental Crystal Structure Determination

description: Related Article: Wei Yang, Kun-Fang Zhu, Cheng-Tian Tao, Yong-Ming Yan, Yong-Xian Cheng|2024|Bioorg.Chem.|144|107169|doi:10.1016/j.bioorg.2024.107169
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hdnzk
title: CCDC 2306089: Experimental Crystal Structure Determination

description: Related Article: R. Martín, A. Sánchez-Oliva, A. Benito, I. Torres-Moya, A. M. Garcia, J. Álvarez-Conde, J. Cabanillas-González, P. Prieto, B. Gómez-Lor|2024|J.Mater.Chem.C|12|2903|doi:10.1039/D3TC04100J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hdnyj
title: CCDC 2306088: Experimental Crystal Structure Determination

description: Related Article: R. Martín, A. Sánchez-Oliva, A. Benito, I. Torres-Moya, A. M. Garcia, J. Álvarez-Conde, J. Cabanillas-González, P. Prieto, B. Gómez-Lor|2024|J.Mater.Chem.C|12|2903|doi:10.1039/D3TC04100J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h1jvy
title: CCDC 2295390: Experimental Crystal Structure Determination

description: Related Article: Hao Wang, Le Shi, Zhangyi Xiong, Si Ma, Honghao Cao, Shijia Cai, Zhiwei Qiao, Jun Pan, Zhijie Chen|2024|Chem.Commun.|60|2397|doi:10.1039/D3CC05087D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.14551935
title: Additional file 3 of Circular RNA ciRS-7 affects the propagation of Cryptosporidium parvum in HCT-8 cells by sponging miR-1270 to activate the NF-κB signaling pathway

description: Additional file 3: Table S3. Significantly differentially expressed circRNAs between C. parvum-infected and noninfected HCT-8 cells (XLSX 95 KB)
DOI: 10.6084/m9.figshare.14551935.v1
title: Additional file 3 of Circular RNA ciRS-7 affects the propagation of Cryptosporidium parvum in HCT-8 cells by sponging miR-1270 to activate the NF-κB signaling pathway

description: Additional file 3: Table S3. Significantly differentially expressed circRNAs between C. parvum-infected and noninfected HCT-8 cells (XLSX 95 KB)
DOI: 10.6084/m9.figshare.22274709
title: Gecko-inspired dry adhesives for heritage conservation – tackling the surface roughness with empirical testing and finite element modelling

description: Gecko-inspired dry adhesives (GDAs) have been developed in an attempt to replicate in polymer material the natural ability of some gecko lizards to attach to nearly any surface. Geckos achieve this with nano-sized structures on their feet that facilitate van der Waals's interactions with the surfaces. The conservation of cultural heritage is an area that could benefit greatly from the introduction of a versatile and easily reversible adhesive. However, the multitude of surface types and various surface textures encountered in this field make the adaptation of GDAs difficult. In this research two types of GDAs, with flat tips and with mushroom-shaped tips have been assessed using pull-off tests on three substrate materials. These are based on real heritage objects’ surfaces (copper and ceramic) with different levels of surface roughness from The Hunterian collection. Adhesive strength varied between different GDAs and as expected adhesive strength reduced with increased substrate roughness. The finite Element Modelling (FEM) of the pull-off tests closely matched empirical results and showed how different behaviours on the microlevel can affect the GDA behaviour on rough surfaces. It helped to understand the microscale behaviour of two different types of GDAs tested. The research has shown the necessary direction for experimental and theoretical research on GDAs which will enable them to be adopted more widely in heritage conservation.
DOI: 10.6084/m9.figshare.22274709.v1
title: Gecko-inspired dry adhesives for heritage conservation – tackling the surface roughness with empirical testing and finite element modelling

description: Gecko-inspired dry adhesives (GDAs) have been developed in an attempt to replicate in polymer material the natural ability of some gecko lizards to attach to nearly any surface. Geckos achieve this with nano-sized structures on their feet that facilitate van der Waals's interactions with the surfaces. The conservation of cultural heritage is an area that could benefit greatly from the introduction of a versatile and easily reversible adhesive. However, the multitude of surface types and various surface textures encountered in this field make the adaptation of GDAs difficult. In this research two types of GDAs, with flat tips and with mushroom-shaped tips have been assessed using pull-off tests on three substrate materials. These are based on real heritage objects’ surfaces (copper and ceramic) with different levels of surface roughness from The Hunterian collection. Adhesive strength varied between different GDAs and as expected adhesive strength reduced with increased substrate roughness. The finite Element Modelling (FEM) of the pull-off tests closely matched empirical results and showed how different behaviours on the microlevel can affect the GDA behaviour on rough surfaces. It helped to understand the microscale behaviour of two different types of GDAs tested. The research has shown the necessary direction for experimental and theoretical research on GDAs which will enable them to be adopted more widely in heritage conservation.