cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vyhpdf9fkh.1
title: GPR_calculator: An on-the-fly surrogate model to accelerate massive nudged elastic band calculations

description: We present GPR_calculator, a package based on Python and C++ programming languages to build an on-the-fly surrogate model using Gaussian Process Regression (GPR) to approximate computationally expensive electronic structure calculations. The key idea is to dynamically train a GPR model during the simulation that can accurately predict energies and forces with uncertainty quantification. When the uncertainty is high, the costly electronic structure calculation is performed to obtain the ground truth data, which is then used to update the GPR model. To illustrate the effectiveness of GPR_calculator, we demonstrate its application in Nudged Elastic Band (NEB) simulations of surface diffusion and reactions, achieving 3-10 times acceleration compared to pure ab initio calculations. The source code is available at https://github.com/MaterSim/GPR_calculator.
DOI: 10.15468/dl.9czd4p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Fulica cristata)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014805-250802193616735/datasets/export for details.
DOI: 10.17632/7hsfxnh47d
title: VacuumTunneling: A package to solve bounce equation with renormalization factor

description: The Vacuum tunneling rate Γ from the effective action is a key to studying the cosmological first-order phase transition (FOPT). One solid way to compute the Γ is to start with the derivative expansion of the effective action and solve the bounce equation numerically. In this process, the renormalization factor Z of the tunneling field may play a center rule, which is not considered in existing packages. Therefore, we present a Mathematica package VacuumTunneling to compute the bounce action with or without the renormalization factor. Applying the VacuumTunneling package, we find that the presence of Z has a significant impact on the action, as well on the tunneling path. We provide some concrete examples to demonstrate the difference between the solution with and without the renormalization factor, both in the action and tunneling path. This package is based on the modified shooting and path deformation method. We also made some optimizations for the super-cooling phase transition (thick wall scenario), in which other numerical package works poorly. This package works as long as the expressions can give values of the potential and the renormalization at a certain field point. This means the input potential and the renormalization can be merely numerical quantities without analytical expressions. The computation time can be as short as 1 second in single-field tunneling and several seconds in multi-field cases.
DOI: 10.17632/7hsfxnh47d.1
title: VacuumTunneling: A package to solve bounce equation with renormalization factor

description: The Vacuum tunneling rate Γ from the effective action is a key to studying the cosmological first-order phase transition (FOPT). One solid way to compute the Γ is to start with the derivative expansion of the effective action and solve the bounce equation numerically. In this process, the renormalization factor Z of the tunneling field may play a center rule, which is not considered in existing packages. Therefore, we present a Mathematica package VacuumTunneling to compute the bounce action with or without the renormalization factor. Applying the VacuumTunneling package, we find that the presence of Z has a significant impact on the action, as well on the tunneling path. We provide some concrete examples to demonstrate the difference between the solution with and without the renormalization factor, both in the action and tunneling path. This package is based on the modified shooting and path deformation method. We also made some optimizations for the super-cooling phase transition (thick wall scenario), in which other numerical package works poorly. This package works as long as the expressions can give values of the potential and the renormalization at a certain field point. This means the input potential and the renormalization can be merely numerical quantities without analytical expressions. The computation time can be as short as 1 second in single-field tunneling and several seconds in multi-field cases.
DOI: 10.17632/6d8zrgmr8c
title: LINF_240029100

description: Cullin; Leishmania infantum (strain JPCM5)
DOI: 10.17632/6d8zrgmr8c.1
title: LINF_240029100

description: Cullin; Leishmania infantum (strain JPCM5)
DOI: 10.17632/9yb3n95jj9
title: LINF_240029000

description: DNA 5'-3' helicase; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.y6h4kb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pterois miles",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014806-250802193616735/datasets/export for details.
DOI: 10.17632/9yb3n95jj9.1
title: LINF_240029000

description: DNA 5'-3' helicase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/32297nv5kk
title: An improved argument principle root-search method for modes of slab waveguides, optical fibers, and spheres

description: We update our root-search method for transcendental equations. Our method is globally convergent and is guaranteed to locate all complex roots within a specified search domain, since it is based on Cauchy's residue theorem. We extend the implementation to treat the dispersion relations of slab waveguides and the resonances of a sphere, in addition to step-index fibers. We also implement other improvements, such as to the contour selection procedure and using non-dimensional search variables, to ensure the method remains reliable even in challenging parameter regimes. We also extend the algorithm to identify leaky modes in terms of propagation constant eigenvalue modes, revealing, to the first time to our knowledge, a discontinuity across the light line in the dispersion plot.
DOI: 10.17632/32297nv5kk.2
title: An improved argument principle root-search method for modes of slab waveguides, optical fibers, and spheres

description: We update our root-search method for transcendental equations. Our method is globally convergent and is guaranteed to locate all complex roots within a specified search domain, since it is based on Cauchy's residue theorem. We extend the implementation to treat the dispersion relations of slab waveguides and the resonances of a sphere, in addition to step-index fibers. We also implement other improvements, such as to the contour selection procedure and using non-dimensional search variables, to ensure the method remains reliable even in challenging parameter regimes. We also extend the algorithm to identify leaky modes in terms of propagation constant eigenvalue modes, revealing, to the first time to our knowledge, a discontinuity across the light line in the dispersion plot.
DOI: 10.17632/hbvhrfzswr
title: LINF_240028100

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/hbvhrfzswr.1
title: LINF_240028100

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/gp6rzrp47m
title: PARPHOM: PARallel PHOnon calculator for Moiré systems

description: The introduction of a twist between two layers of two-dimensional materials has opened up a new and exciting field of research known as twistronics. In these systems, the phonon dispersions show significant renormalization and enhanced electron-phonon interactions as a function of the twist angle. However, the large system size of the resulting moiré patterns in these systems makes phonon calculations computationally challenging. In this paper, we present PARPHOM, a powerful code package designed to address these challenges. PARPHOM enables the generation of force constants, computation of phononic band structures, and determination of density of states in twisted 2D material systems. Moreover, PARPHOM provides essential routines to investigate the finite temperature dynamics in these systems and analyze the chirality of the phonon bands. This paper serves as an introduction to PARPHOM, highlighting its capabilities and demonstrating its utility in unraveling the intricate phononic properties of twisted 2D materials.
DOI: 10.17632/gp6rzrp47m.1
title: PARPHOM: PARallel PHOnon calculator for Moiré systems

description: The introduction of a twist between two layers of two-dimensional materials has opened up a new and exciting field of research known as twistronics. In these systems, the phonon dispersions show significant renormalization and enhanced electron-phonon interactions as a function of the twist angle. However, the large system size of the resulting moiré patterns in these systems makes phonon calculations computationally challenging. In this paper, we present PARPHOM, a powerful code package designed to address these challenges. PARPHOM enables the generation of force constants, computation of phononic band structures, and determination of density of states in twisted 2D material systems. Moreover, PARPHOM provides essential routines to investigate the finite temperature dynamics in these systems and analyze the chirality of the phonon bands. This paper serves as an introduction to PARPHOM, highlighting its capabilities and demonstrating its utility in unraveling the intricate phononic properties of twisted 2D materials.
DOI: 10.17632/swwrvtm582
title: LINF_240028000

description: COP1-interactive protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/swwrvtm582.1
title: LINF_240028000

description: COP1-interactive protein; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.fvwwg2
title: Occurrence Download

description: A dataset containing 4539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Material citation, Occurrence evidence, Specimen)",
 "Continent is one of (South America, North America)",
 "Country is one of (United States of America, Mexico, Brazil, Colombia, Bahamas, Venezuela (Bolivarian Republic of), Belize, Costa Rica, Guyana)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gobiesocidae"
 ]
}

 The dataset includes 4539 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014809-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mbdvxm
title: Occurrence Download

description: A dataset containing 2646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myiothlypis basilica)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 2646 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014810-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/fw8g7rvw2h
title: LINF_240027900

description: Syndetin-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/fw8g7rvw2h.1
title: LINF_240027900

description: Syndetin-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/6dyp7ds8bk
title: Original data of "Mitochondrial dysfunction activates ADAMTS-5 expression via mt-dsRNA-PKR-Spi-1 axis in osteoarthritic chondrocytes"

description: Original data of "Mitochondrial dysfunction activates ADAMTS-5 expression via mt-dsRNA-PKR-Spi-1 axis in osteoarthritic chondrocytes"
DOI: 10.17632/6dyp7ds8bk.1
title: Original data of "Mitochondrial dysfunction activates ADAMTS-5 expression via mt-dsRNA-PKR-Spi-1 axis in osteoarthritic chondrocytes"

description: Original data of "Mitochondrial dysfunction activates ADAMTS-5 expression via mt-dsRNA-PKR-Spi-1 axis in osteoarthritic chondrocytes"
DOI: 10.17632/5s786fzhbc
title: LINF_240027700

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.s7477d
title: Occurrence Download

description: A dataset containing 12996 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Fulica cristata)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 12996 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014808-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/5s786fzhbc.1
title: LINF_240027700

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.znq7yc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muraena kailuae"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014811-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/kvyfmb3j7f.1
title: Revegetation enhances soil infiltrability by regulating soil property and root systems: Topsoil exhibits higher sensitivity than subsoil

description: Revegetation enhances soil infiltrability by regulating soil property and root systems: Topsoil exhibits higher sensitivity than subsoil
DOI: 10.17632/kfg55pby62
title: Dataset Cagub Jakarta 2024

description: Raw data was downloaded using Python programming with the Twitter API. The data came from Twitter platforms discussing the 2024 Jakarta gubernatorial candidates. A total of 12,099 data points were collected, with the following details for each candidate:
• Pramono Anung: December 2024 - January 2025
• Ridwan Kamil: December 2024 - January 2025
• Dharma Pongrekun: December 2024 - January 2025

The data used was collected before the 2024 Jakarta gubernatorial candidates were determined, but the topic of the Jakarta gubernatorial election was already widely discussed on Twitter. The data obtained will be useful for further research as a comparison in determining the results of the Jakarta gubernatorial election, when compared to data from the candidate determination and campaign period, as well as data after the election (actual results).
DOI: 10.17632/kfg55pby62.1
title: Dataset Cagub Jakarta 2024

description: Raw data was downloaded using Python programming with the Twitter API. The data came from Twitter platforms discussing the 2024 Jakarta gubernatorial candidates. A total of 12,099 data points were collected, with the following details for each candidate:
• Pramono Anung: December 2024 - January 2025
• Ridwan Kamil: December 2024 - January 2025
• Dharma Pongrekun: December 2024 - January 2025

The data used was collected before the 2024 Jakarta gubernatorial candidates were determined, but the topic of the Jakarta gubernatorial election was already widely discussed on Twitter. The data obtained will be useful for further research as a comparison in determining the results of the Jakarta gubernatorial election, when compared to data from the candidate determination and campaign period, as well as data after the election (actual results).
DOI: 10.17632/53hy5btx6t
title: PhD Thesis Supplementary Materials: The effect of Health System, Health Risk factors and Health Service Coverage on Fertility, Morbidity and Mortality in HDI countries: An Econometric analysis

description: This repository accompanies the doctoral thesis titled: "The Effect of Health System, Health Risk Factors and Health Service Coverage on Fertility, Morbidity and Mortality in HDI Countries: An Econometric Analysis." Given the complexity of the data and methodological procedures, key supplementary materials detailing the data sources, processing techniques, analytical scripts, and extended results are provided in the present Mendeley Data Repository. These materials are intended to promote transparency, reproducibility, and further research.
The repository includes the following supplementary files:
Supplementary File 1: Contains detailed information on all indicators used in the study, including those from the Global Reference List (GRL) and control variables. It specifies the definition, unit of measurement, data source, missing data proportions, inclusion status, and whether the indicator is positively or negatively associated with the outcome.
Supplementary File 2: Provides the R script used to perform Multiple Imputation by Chained Equations (MICE) to handle missing data across indicators.
Supplementary File 3: Describes the imputed dataset generated using the MICE method for both pre-COVID (2015–2019) and post-COVID (2020–2021) periods.
Supplementary File 4: Contains the R script used to construct the composite and sub-indices for Health System, Health Risk Factors, Service Coverage, and Health Status.
Supplementary File 5: Provides the R script used to compute Compound Annual Growth Rates (CAGR) for all indices and component indicators.
Supplementary File 6: Includes the Stata Do-file used to run panel data regression models, estimating the impact of Health System, Health Risk Factors, and Service Coverage on fertility, morbidity, and mortality.
Supplementary File 7: Contains the Stata Do-file used for conducting the Phillips and Sul Convergence Analysis to assess convergence/divergence trends among countries toward selected health-related SDG targets.
Supplementary File 8: Provides descriptive statistics—including mean, standard deviation, and coefficient of variation—for selected health indicators across 100 HDI countries during the study period (2015–2021).
Supplementary File 9: Presents the CAGR estimates of all constructed indices, separately reported for pre-COVID (2015–2019) and post-COVID (2020–2021) phases.
Supplementary File 10: Provides the forecasted values for 57 indicators across 100 countries up to the year 2025, supporting the study’s predictive analysis.
DOI: 10.17632/53hy5btx6t.1
title: PhD Thesis Supplementary Materials: The effect of Health System, Health Risk factors and Health Service Coverage on Fertility, Morbidity and Mortality in HDI countries: An Econometric analysis

description: This repository accompanies the doctoral thesis titled: "The Effect of Health System, Health Risk Factors and Health Service Coverage on Fertility, Morbidity and Mortality in HDI Countries: An Econometric Analysis." Given the complexity of the data and methodological procedures, key supplementary materials detailing the data sources, processing techniques, analytical scripts, and extended results are provided in the present Mendeley Data Repository. These materials are intended to promote transparency, reproducibility, and further research.
The repository includes the following supplementary files:
Supplementary File 1: Contains detailed information on all indicators used in the study, including those from the Global Reference List (GRL) and control variables. It specifies the definition, unit of measurement, data source, missing data proportions, inclusion status, and whether the indicator is positively or negatively associated with the outcome.
Supplementary File 2: Provides the R script used to perform Multiple Imputation by Chained Equations (MICE) to handle missing data across indicators.
Supplementary File 3: Describes the imputed dataset generated using the MICE method for both pre-COVID (2015–2019) and post-COVID (2020–2021) periods.
Supplementary File 4: Contains the R script used to construct the composite and sub-indices for Health System, Health Risk Factors, Service Coverage, and Health Status.
Supplementary File 5: Provides the R script used to compute Compound Annual Growth Rates (CAGR) for all indices and component indicators.
Supplementary File 6: Includes the Stata Do-file used to run panel data regression models, estimating the impact of Health System, Health Risk Factors, and Service Coverage on fertility, morbidity, and mortality.
Supplementary File 7: Contains the Stata Do-file used for conducting the Phillips and Sul Convergence Analysis to assess convergence/divergence trends among countries toward selected health-related SDG targets.
Supplementary File 8: Provides descriptive statistics—including mean, standard deviation, and coefficient of variation—for selected health indicators across 100 HDI countries during the study period (2015–2021).
Supplementary File 9: Presents the CAGR estimates of all constructed indices, separately reported for pre-COVID (2015–2019) and post-COVID (2020–2021) phases.
Supplementary File 10: Provides the forecasted values for 57 indicators across 100 countries up to the year 2025, supporting the study’s predictive analysis.
DOI: 10.17632/2rn7f8rsd9.1
title: The non-pathogenic strain Fusarium oxysporum FO12 mitigates simultaneous Verticillium dahliae and Fe deficiency stresses in Arabidopsis thaliana

description: qRT-PCR data files
DOI: 10.17632/f9c874j245
title: Response of soil organic carbon to revegetation, engineering measures and rainstorm-induced erosion in an agricultural watershed in the loess tableland-gully region of China

description: Response of soil organic carbon to revegetation, engineering measures and rainstorm-induced erosion in an agricultural watershed in the loess tableland-gully region of China
DOI: 10.17632/f9c874j245.1
title: Response of soil organic carbon to revegetation, engineering measures and rainstorm-induced erosion in an agricultural watershed in the loess tableland-gully region of China

description: Response of soil organic carbon to revegetation, engineering measures and rainstorm-induced erosion in an agricultural watershed in the loess tableland-gully region of China
DOI: 10.17632/4s2b95cg3w
title: Park simulated dataset and CFX scenarios

description: A simulated dataset generated based on the morphological patterns of Tehran, designed to evaluate Sky View Factor and visibility in urban open spaces. Includes 1,152 urban block configurations and 10 representative CFX scenarios.
DOI: 10.17632/4s2b95cg3w.1
title: Park simulated dataset and CFX scenarios

description: A simulated dataset generated based on the morphological patterns of Tehran, designed to evaluate Sky View Factor and visibility in urban open spaces. Includes 1,152 urban block configurations and 10 representative CFX scenarios.