cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27195831
title: Generalized Additive Spatial Smoothing (GASS): A Multiscale Regression Framework for Modeling Neighborhood Effects Across Spatial Supports

description: A new technique called generalized additive spatial smoothing (GASS) is introduced for modeling neighborhood effects within a regression framework. GASS has a number of desirable features, namely that it provides a data-driven mechanism for endogenously selecting neighborhoods based on a spatial scale hyperparameter. By allowing different scale hyperparameters to be selected for different relationships in the model, the technique is inherently multiscale and allows neighborhoods to vary by relationship. In addition, GASS includes a measure of uncertainty associated with each scale hyperparameter. These characteristics make it attractive for modeling phenomena where proximity might be an important aspect of a process, especially when a clear definition of proximity is not immediately available. Through multiscale data-driven spatial smoothing, GASS conducts a form of change of support and therefore also facilitates the incorporation of data from diverse sources. Finally, the technique is flexible and can be adapted and expanded with relative ease because it builds on generalized additive modeling. After providing an overview of the methodology, including a modified backfitting algorithm for calibration, a simulation experiment is described and an empirical example modeling bike-share usage is presented. The simulation results indicate that GASS can generally produce reliable results pertaining to both the regression coefficients and scale hyperparameters, and the results from the empirical example demonstrate that the GASS approach provides a better model fit and captures relationships that might otherwise be obfuscated. Overall, these results highlight the potential of the GASS framework and the importance of measuring multiscale neighborhood effects.
DOI: 10.6084/m9.figshare.27195831.v1
title: Generalized Additive Spatial Smoothing (GASS): A Multiscale Regression Framework for Modeling Neighborhood Effects Across Spatial Supports

description: A new technique called generalized additive spatial smoothing (GASS) is introduced for modeling neighborhood effects within a regression framework. GASS has a number of desirable features, namely that it provides a data-driven mechanism for endogenously selecting neighborhoods based on a spatial scale hyperparameter. By allowing different scale hyperparameters to be selected for different relationships in the model, the technique is inherently multiscale and allows neighborhoods to vary by relationship. In addition, GASS includes a measure of uncertainty associated with each scale hyperparameter. These characteristics make it attractive for modeling phenomena where proximity might be an important aspect of a process, especially when a clear definition of proximity is not immediately available. Through multiscale data-driven spatial smoothing, GASS conducts a form of change of support and therefore also facilitates the incorporation of data from diverse sources. Finally, the technique is flexible and can be adapted and expanded with relative ease because it builds on generalized additive modeling. After providing an overview of the methodology, including a modified backfitting algorithm for calibration, a simulation experiment is described and an empirical example modeling bike-share usage is presented. The simulation results indicate that GASS can generally produce reliable results pertaining to both the regression coefficients and scale hyperparameters, and the results from the empirical example demonstrate that the GASS approach provides a better model fit and captures relationships that might otherwise be obfuscated. Overall, these results highlight the potential of the GASS framework and the importance of measuring multiscale neighborhood effects.
DOI: 10.5281/zenodo.14624049
title: scabiosa_tenuis_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.14624050
title: scabiosa_tenuis_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.14624067
title: Table S.2.3. DNA barcode reference library of public records retrieved from BOLD using BAGS.
DOI: 10.5281/zenodo.14624068
title: Table S.2.3. DNA barcode reference library of public records retrieved from BOLD using BAGS.
DOI: 10.5281/zenodo.11477424
title: Research Compendium for Himes et al. (2024): "Using neural networks for near-real-time aerosol retrievals from OMPS Limb Profiler measurements"

description: This archive is the Reproducible Research Compendium for

Using neural networks for near-real-time aerosol retrievals from OMPS Limb Profiler measurements

by Himes et al. (2024), submitted to Atmospheric Measurement Techniques.

This compendium includes all files related to MARGE associated with the manuscript.

NN model files are split into smaller files for convenience, given their sizes.  To recombine the files, do, e.g.,     cat cnn_weights_NH-LW.h5* > cnn_weights_NH-LW.h5

User interested in running MARGE will need to clone the GitHub repo (https://github.com/exosports/MARGE), apply the patch file to checksum fc95b3c, organize the relevant files into directories as listed in the configuration files (Zenodo does not support organizing files into directory structures) and calculate the number of training, validation, and test cases to be stored in the relevant input file specified in the configuration file.  MARGE is under the Reproducible Research Software License (https://planets.ucf.edu/resources/reproducible-research/software-license/).  For more details on MARGE, see the User Manual on GitHub.
description: MDH was supported in part by an appointment to the NASA Postdoctoral Program at the NASA Goddard Space Flight Center, administered by Oak Ridge Associated Universities under contract with NASA.  GT was supported by NASA Earth Science SNPPSP Grant 80NSSC23K1037.
DOI: 10.5281/zenodo.11477425
title: Research Compendium for Himes et al. (2024): "Using neural networks for near-real-time aerosol retrievals from OMPS Limb Profiler measurements"

description: This archive is the Reproducible Research Compendium for

Using neural networks for near-real-time aerosol retrievals from OMPS Limb Profiler measurements

by Himes et al. (2024), submitted to Atmospheric Measurement Techniques.

This compendium includes all files related to MARGE associated with the manuscript.

NN model files are split into smaller files for convenience, given their sizes.  To recombine the files, do, e.g.,     cat cnn_weights_NH-LW.h5* > cnn_weights_NH-LW.h5

User interested in running MARGE will need to clone the GitHub repo (https://github.com/exosports/MARGE), apply the patch file to checksum fc95b3c, organize the relevant files into directories as listed in the configuration files (Zenodo does not support organizing files into directory structures) and calculate the number of training, validation, and test cases to be stored in the relevant input file specified in the configuration file.  MARGE is under the Reproducible Research Software License (https://planets.ucf.edu/resources/reproducible-research/software-license/).  For more details on MARGE, see the User Manual on GitHub.
description: MDH was supported in part by an appointment to the NASA Postdoctoral Program at the NASA Goddard Space Flight Center, administered by Oak Ridge Associated Universities under contract with NASA.  GT was supported by NASA Earth Science SNPPSP Grant 80NSSC23K1037.
DOI: 10.15468/dl.yk6gv9
title: Occurrence Download

description: A dataset containing 1922 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hovenia dulcis Thunb.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1922 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062685-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.arsynr
title: Occurrence Download

description: A dataset containing 26316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Asia, Antarctica, Oceania, Europe, North America, South America)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Scomber Linnaeus, 1758, Graptemys caglei Haynes & Mckown, 1974)"
 ]
}

 The dataset includes 26316 records from 320 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062682-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgy6bs
title: Occurrence Download

description: A dataset containing 8961 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Antarctica, Asia, Oceania, Europe, North America, South America)",
 "OccurrenceStatus is Present",
 "TaxonKey is Thunnus South, 1845"
 ]
}

 The dataset includes 8961 records from 217 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062684-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7294/27157005
title: Cumulus cell expansion, nuclear maturation and embryonic development of bovine cumulus-oocyte complexes matured in varying concentrations of follicular fluid

description: In this study, we tested the overall hypothesis that CC expansion and early embryo development would be improved by including follicular fluid (FF) from small or large follicles in the oocyte maturation medium. In the first experiment, FF aspirated from bovine abattoir ovaries was added to the maturation medium at 0, 25, 50, 75 or 100%. Images of individual COCs were captured at 0, 6, 12 and 19 hours (h) of the maturation period and analyzed to calculate change in the total area over time. Cumulus cell expansion was greatest in COCs matured in 75% and 50% FF, and these differences were detectable at 12 (75% FF only) and 19 h (50% and 75% FF) of maturation. The improvement in CC expansion was greatest when FF from small follicles was used. Treatments for the subsequent experiments were selected based upon the results of the first experiment. Oocyte nuclear maturation rates were observed after supplementing the maturation medium with 0 or 75% FF and maturing for 19 h. The rate of nuclear maturation as determined by the presence or absence of the first polar body was similar between control (0% FF) and treated (75% FF) groups. In the final experiment, COCs were matured in 0%, 50% or 75% FF in preparation for IVF. Duration of the maturation period (12, 19 or 22 h) and size of the follicles from which FF was collected (small or large) also varied. In general, FF supplementation at 50% did not affect the zygotes’ developmental potential (neither increased nor decreased). Supplementation of maturation medium with 75% FF from small follicles consistently reduced measures of embryo development while 75% FF from large follicles yielded mixed results. It is concluded that FF supplementation improves CC expansion, but the greater CC expansion does not benefit subsequent embryo development. Notably, however, the 50% FF treatment did not reduce blastocyst rates, indicating that FF can be included in maturation media at concentrations of 50% or less with no detriment to IVF outcomes.
DOI: 10.7294/27157005.v1
title: Cumulus cell expansion, nuclear maturation and embryonic development of bovine cumulus-oocyte complexes matured in varying concentrations of follicular fluid

description: In this study, we tested the overall hypothesis that CC expansion and early embryo development would be improved by including follicular fluid (FF) from small or large follicles in the oocyte maturation medium. In the first experiment, FF aspirated from bovine abattoir ovaries was added to the maturation medium at 0, 25, 50, 75 or 100%. Images of individual COCs were captured at 0, 6, 12 and 19 hours (h) of the maturation period and analyzed to calculate change in the total area over time. Cumulus cell expansion was greatest in COCs matured in 75% and 50% FF, and these differences were detectable at 12 (75% FF only) and 19 h (50% and 75% FF) of maturation. The improvement in CC expansion was greatest when FF from small follicles was used. Treatments for the subsequent experiments were selected based upon the results of the first experiment. Oocyte nuclear maturation rates were observed after supplementing the maturation medium with 0 or 75% FF and maturing for 19 h. The rate of nuclear maturation as determined by the presence or absence of the first polar body was similar between control (0% FF) and treated (75% FF) groups. In the final experiment, COCs were matured in 0%, 50% or 75% FF in preparation for IVF. Duration of the maturation period (12, 19 or 22 h) and size of the follicles from which FF was collected (small or large) also varied. In general, FF supplementation at 50% did not affect the zygotes’ developmental potential (neither increased nor decreased). Supplementation of maturation medium with 75% FF from small follicles consistently reduced measures of embryo development while 75% FF from large follicles yielded mixed results. It is concluded that FF supplementation improves CC expansion, but the greater CC expansion does not benefit subsequent embryo development. Notably, however, the 50% FF treatment did not reduce blastocyst rates, indicating that FF can be included in maturation media at concentrations of 50% or less with no detriment to IVF outcomes.
DOI: 10.17632/p5btbfbhx6
title: Bald Eagle Winter Roosting Data

description: This data set contains data recorded by B. Mandernack and others (hereafter referred to as ‘observers’) at EVNP, totaling 496 days (and 873 hours) of observation across 16 winter seasons (1990-2004, and 2012–2014) at Eagle Valley Nature Preserve. Eagle Valley Nature Preserve (EVNP) is owned and managed by the Kohler Co. and the Kohler Trust for Preservation. The 587 ha property is located adjacent to the Mississippi River in Grant County of southwest Wisconsin and within a broader area defined as the Driftless Region see https://wgnhs.wisc.edu/pubshare/ES057.pdf .
DOI: 10.17632/p5btbfbhx6.1
title: Bald Eagle Winter Roosting Data

description: This data set contains data recorded by B. Mandernack and others (hereafter referred to as ‘observers’) at EVNP, totaling 496 days (and 873 hours) of observation across 16 winter seasons (1990-2004, and 2012–2014) at Eagle Valley Nature Preserve. Eagle Valley Nature Preserve (EVNP) is owned and managed by the Kohler Co. and the Kohler Trust for Preservation. The 587 ha property is located adjacent to the Mississippi River in Grant County of southwest Wisconsin and within a broader area defined as the Driftless Region see https://wgnhs.wisc.edu/pubshare/ES057.pdf .
DOI: 10.5281/zenodo.13983928
title: Flexibility of cutaneous evaporative water loss in response to hydration in pregnant Prairie Rattlesnakes and their neonates

description: Data and code associated with the paper published in the Journal of Experimental Biology in 2025.
DOI: 10.5281/zenodo.13983927
title: Flexibility of cutaneous evaporative water loss in response to hydration in pregnant Prairie Rattlesnakes and their neonates

description: Data and code associated with the paper published in the Journal of Experimental Biology in 2025.
DOI: 10.17632/g5vx3pv9t8.1
title: Analyzing Political Preferences of Second-Generation Immigrants across the Rural-Urban Divide

description: This folder contains all raw data and codes to replicate results contained in the paper "Analyzing Political Preferences of Second-Generation Immigrants across the Rural-Urban Divide" by Simone Moriconi, Giovanni Peri and Riccardo Turati.
DOI: 10.17632/94gn49b7kj.2
title: JKN Simulation Data

description: Data and code for simulation study results in comparing JKN method to alternative methods.
DOI: 10.17632/thvh9j7hbk.1
title: BL3.1 and BL3.2 Protein Sequences

description: Amino acid sequence for VHH constructs BL3.1 (monomeric) and BL3.2 (homodimeric).
DOI: 10.17632/thvh9j7hbk.2
title: BL3.1 and BL3.2 Protein Sequences

description: Amino acid sequence for VHH constructs BL3.1 (monomeric) and BL3.2 (homodimeric).
DOI: 10.17632/ddk3hkhjx6.1
title: Supplementary File: Identification of QTL for Body Conformation and Head Shape in the American Quarter Horse

description: These are the bed, bim, and fam files along with the Body Factor 1 and 2 markers in their own individual files for analysis on equine body and head size and proportion to investigate genes responsible for size variation in a single breed.
DOI: 10.15468/dl.63ptr6
title: Occurrence Download

description: A dataset containing 2355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)",
 "Country is Colombia",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 2355 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062687-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xuaup4
title: Occurrence Download

description: A dataset containing 29608 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hura crepitans L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 29608 records from 241 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062688-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/3wgwscbs2y.1
title: Data for article: Techno-economics of solar re-powering and retro-fitting an existing district heating network

description: Information made available to support the reader in understanding the scientific work behind the article, as well as enabling reproduction of the results.
DOI: 10.17632/3wgwscbs2y.2
title: Data for article: Techno-economics of solar re-powering and retro-fitting an existing district heating network

description: Information made available to support the reader in understanding the scientific work behind the article, as well as enabling reproduction of the results.
DOI: 10.15468/dl.uf4cy3
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Fossil",
 "TaxonKey is Ulmus davidiana var. japonica (Rehder) Nakai"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062689-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjhe8e
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 {
 "and" : [
 "GadmGid is one of (USA.35_1)",
 "TaxonKey is one of (Pekania pennanti (Erxleben, 1777))"
 ]
 }
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062691-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14624065
title: ROBOTICS AND GEOMETRY: A PATHWAY TO TRANSFORM EMOTIONS AND ATTITUDES IN PRESERVICE TEACHERS' LEARNING
DOI: 10.5281/zenodo.14624066
title: ROBOTICS AND GEOMETRY: A PATHWAY TO TRANSFORM EMOTIONS AND ATTITUDES IN PRESERVICE TEACHERS' LEARNING
DOI: 10.15468/dl.xunzsh
title: Occurrence Download

description: A dataset containing 659 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Quercus canariensis Willd."
 ]
}

 The dataset includes 659 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062693-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rrd3rw
title: Occurrence Download

description: A dataset containing 55899 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)"
 ]
}

 The dataset includes 55899 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062692-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2cjjcj
title: Occurrence Download

description: A dataset containing 678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Abies hickelii Flous & Gaussen"
 ]
}

 The dataset includes 678 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062695-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-247899
title: Women's handbook of organization and procedure, COGIC, 1989

description: [description english/roman)] McGlothen, Mattie. Women's handbook of organization and procedure. Revised edition compiled and supplemented by Madge Cyars and Frances Sipes Curtis. [s.l.]: Church of God in Christ Publishing House, 1989, reprinted 1994.
DOI: 10.15468/dl.62mn5y
title: Occurrence Download

description: A dataset containing 11819 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EW, CR, VU)",
 "PublishingOrg is c5f7ef70-e233-11d9-a4d6-b8a03c50a862",
 "TaxonKey is Gyps coprotheres (J.R.Forster, 1798)"
 ]
}

 The dataset includes 11819 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025003-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvag9p
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erithalis salmeoides Correll"
 ]
}

 The dataset includes 58 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218604-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t9nncu
title: Occurrence Download

description: A dataset containing 356 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ancylotrypa Simon, 1889"
 ]
}

 The dataset includes 356 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057055-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.