cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6377103
title: PsPM-FSS7B: Inhibiting human aversive memory by transcranial theta-burst stimulation to primary sensory cortex

description: This dataset includes skin conductance response (SCR), electromygoram (EMG), and pupil size response (PSR) measurements. Also included are CS and US information, keypress responses, keypress response times and key correctness. The dataset contains data from 68 healthy unmedicated participants (34 females) participating in a classical (Pavlovian) discriminant delay fear conditioning task. Simple and complex CS are deliverd to the intermediate phalanges of the index and middle fingers of the nondominant hand. Simple stimulis are stimulations to either index or middle finger, complex stimulis are stimulations of different temporal structure to both index and middle fingers. CS intensity is set to a perceivable but not unpleasant level. US is a train of electric square pulses delivered with a constant current stimulator (Digitimer DS7A, Digitimer, Welwyn Garden City, UK) on participants' dominant forearm through a pin-cathode/ring-anode configuration. SOA betwen the CS and US is 3.5 s. The ITI is randomly determined on each trial to be 7, 9, or 11 s. The study included fear acquisition (day 1), recall and retest sessions (day 2). Participants are divided into experimental and control groups, where experimental group received continuous theta-burst stimulation on primary somatosensory cortex contralateral to the CS hand immediately prior to fear acquisition, and control group received the same stimulation to the primary somatosensory cortex ipsilateral to the CS hand. For SCR data from the acquisition session, there are 62 datasets (28 experimental, 34 control), and for PSR, 37 datasets (20 experimental, 17 control). For EMG data from the recall session, there are 52 datasets (25 experimental, 27 control). For SCR data from the retest session, there are 56 datasets (27 experimental, 39 control), and for PSR, 42 datasets (22 experimental, 20 control).
DOI: 10.5281/zenodo.6377102
title: PsPM-FSS7B: Inhibiting human aversive memory by transcranial theta-burst stimulation to primary sensory cortex

description: This dataset includes skin conductance response (SCR), electromygoram (EMG), and pupil size response (PSR) measurements. Also included are CS and US information, keypress responses, keypress response times and key correctness. The dataset contains data from 68 healthy unmedicated participants (34 females) participating in a classical (Pavlovian) discriminant delay fear conditioning task. Simple and complex CS are deliverd to the intermediate phalanges of the index and middle fingers of the nondominant hand. Simple stimulis are stimulations to either index or middle finger, complex stimulis are stimulations of different temporal structure to both index and middle fingers. CS intensity is set to a perceivable but not unpleasant level. US is a train of electric square pulses delivered with a constant current stimulator (Digitimer DS7A, Digitimer, Welwyn Garden City, UK) on participants' dominant forearm through a pin-cathode/ring-anode configuration. SOA betwen the CS and US is 3.5 s. The ITI is randomly determined on each trial to be 7, 9, or 11 s. The study included fear acquisition (day 1), recall and retest sessions (day 2). Participants are divided into experimental and control groups, where experimental group received continuous theta-burst stimulation on primary somatosensory cortex contralateral to the CS hand immediately prior to fear acquisition, and control group received the same stimulation to the primary somatosensory cortex ipsilateral to the CS hand. For SCR data from the acquisition session, there are 62 datasets (28 experimental, 34 control), and for PSR, 37 datasets (20 experimental, 17 control). For EMG data from the recall session, there are 52 datasets (25 experimental, 27 control). For SCR data from the retest session, there are 56 datasets (27 experimental, 39 control), and for PSR, 42 datasets (22 experimental, 20 control).
DOI: 10.6084/m9.figshare.19665512
title: Evaluating ground disturbance at elephant skid trails, logging roads and log landings under the Myanmar selection system

description: There has been growing interest in the practice of reduced-impact logging (RIL) to enhance various ecological services of selectively logged tropical forests. It is thus important to evaluate the effectiveness of different logging operations between RIL and conventional logging (CON). The Myanmar Selection System (MSS) has a long history and is well known for its use of elephants for skidding, which is considered one form of RIL. However, the difference in the impacts of logging operations between the MSS using elephants for skidding and machine-only-based operations commonly adopted in other countries is unknown. The present study evaluated ground disturbance along elephant skid trails, along logging roads and at log landings in four compartments logged under the MSS, comparing with reported values for CON and RIL in the other countries. The ground disturbance in the MSS compartments was, respectively, 2.1% and 0.4% in average for logging roads and log landings; it is not significantly different from that for CON and RIL (p &gt; 0.05). In contrast, the disturbed area along elephant skid trails (0.9%) is much lower than that for CON (5.2%) and RIL (4.7%) (p &lt; 0.05). A large difference in the width of skid trails was found between elephant skidding (1.0 m) and machinery (CON: 5.5 m, RIL: 4.6 m) (p &lt; 0.0001). We conclude that elephant skidding can largely reduce ground disturbance due to much narrower width of the skid trails as compared with machine skidding, while MSS does not differ from the other countries in ground disturbance at logging roads and log landings.
DOI: 10.6084/m9.figshare.19665512.v2
title: Evaluating ground disturbance at elephant skid trails, logging roads and log landings under the Myanmar selection system

description: There has been growing interest in the practice of reduced-impact logging (RIL) to enhance various ecological services of selectively logged tropical forests. It is thus important to evaluate the effectiveness of different logging operations between RIL and conventional logging (CON). The Myanmar Selection System (MSS) has a long history and is well known for its use of elephants for skidding, which is considered one form of RIL. However, the difference in the impacts of logging operations between the MSS using elephants for skidding and machine-only-based operations commonly adopted in other countries is unknown. The present study evaluated ground disturbance along elephant skid trails, along logging roads and at log landings in four compartments logged under the MSS, comparing with reported values for CON and RIL in the other countries. The ground disturbance in the MSS compartments was, respectively, 2.1% and 0.4% in average for logging roads and log landings; it is not significantly different from that for CON and RIL (p &gt; 0.05). In contrast, the disturbed area along elephant skid trails (0.9%) is much lower than that for CON (5.2%) and RIL (4.7%) (p &lt; 0.05). A large difference in the width of skid trails was found between elephant skidding (1.0 m) and machinery (CON: 5.5 m, RIL: 4.6 m) (p &lt; 0.0001). We conclude that elephant skidding can largely reduce ground disturbance due to much narrower width of the skid trails as compared with machine skidding, while MSS does not differ from the other countries in ground disturbance at logging roads and log landings.
DOI: 10.6084/m9.figshare.19576190
title: Mammal and bird species using cavities among forests of different ages on Okinawajima Island in the Ryukyu Archipelago, Japan

description: Various animals use tree cavities in the northern forest of Okinawajima Island in the Ryukyu Archipelago. However, the cavity characteristics and forest types used by cavity users are not well known. The aim of this study was to reveal the cavity users in natural forests of different ages in northern Okinawajima Island. Camera trap surveys were conducted to identify the utilization of cavities in four <i>Castanopsis sieboldii</i> dominated forests; one 40-year-old, one 70-year-old, and two mature forests. Only a few cavities were recorded in the 40-year-old forest and these locations were limited to the lower part of the trees. Consequently, cavity users were limited to two ground-foraging bird species. In contrast, cavities of various sizes were located at various heights above the ground in the other three types of forests, although endangered mammals such as Ryukyu long-furred rat (<i>Diplothrix legata</i>) and Ryukyu tube-nosed bat (<i>Murina ryukyuana</i>) only used cavities in mature forests. The greatest number of cavity-using bird species were recorded in the 70-year-old forest, and a Ryukyu robin (<i>Larvivora komadori</i>) built a nest in a cavity. These results show that mature forests provide various types of cavities with various functions which are important for diverse animal taxa, and that cavity users differ among forests of different ages. Furthermore, it was observed that cavity availability and use does not recover in 70 years. Cavity users should be considered in forest management not only in the core area, but also in the buffer zone of the protected areas in the future.
DOI: 10.6084/m9.figshare.19576190.v1
title: Mammal and bird species using cavities among forests of different ages on Okinawajima Island in the Ryukyu Archipelago, Japan

description: Various animals use tree cavities in the northern forest of Okinawajima Island in the Ryukyu Archipelago. However, the cavity characteristics and forest types used by cavity users are not well known. The aim of this study was to reveal the cavity users in natural forests of different ages in northern Okinawajima Island. Camera trap surveys were conducted to identify the utilization of cavities in four <i>Castanopsis sieboldii</i> dominated forests; one 40-year-old, one 70-year-old, and two mature forests. Only a few cavities were recorded in the 40-year-old forest and these locations were limited to the lower part of the trees. Consequently, cavity users were limited to two ground-foraging bird species. In contrast, cavities of various sizes were located at various heights above the ground in the other three types of forests, although endangered mammals such as Ryukyu long-furred rat (<i>Diplothrix legata</i>) and Ryukyu tube-nosed bat (<i>Murina ryukyuana</i>) only used cavities in mature forests. The greatest number of cavity-using bird species were recorded in the 70-year-old forest, and a Ryukyu robin (<i>Larvivora komadori</i>) built a nest in a cavity. These results show that mature forests provide various types of cavities with various functions which are important for diverse animal taxa, and that cavity users differ among forests of different ages. Furthermore, it was observed that cavity availability and use does not recover in 70 years. Cavity users should be considered in forest management not only in the core area, but also in the buffer zone of the protected areas in the future.
DOI: 10.6084/m9.figshare.19665512.v1
title: Evaluating ground disturbance at elephant skid trails, logging roads and log landings under the Myanmar selection system

description: There has been growing interest in the practice of reduced-impact logging (RIL) to enhance various ecological services of selectively logged tropical forests. It is thus important to evaluate the effectiveness of different logging operations between RIL and conventional logging (CON). The Myanmar Selection System (MSS) has a long history and is well known for its use of elephants for skidding, which is considered one form of RIL. However, the difference in the impacts of logging operations between the MSS using elephants for skidding and machine-only-based operations commonly adopted in other countries is unknown. The present study evaluated ground disturbance along elephant skid trails, along logging roads and at log landings in four compartments logged under the MSS, comparing with reported values for CON and RIL in the other countries. The ground disturbance in the MSS compartments was, respectively, 2.1% and 0.4% in average for logging roads and log landings; it is not significantly different from that for CON and RIL (p &gt; 0.05). In contrast, the disturbed area along elephant skid trails (0.9%) is much lower than that for CON (5.2%) and RIL (4.7%) (p &lt; 0.05). A large difference in the width of skid trails was found between elephant skidding (1.0 m) and machinery (CON: 5.5 m, RIL: 4.6 m) (p &lt; 0.0001). We conclude that elephant skidding can largely reduce ground disturbance due to much narrower width of the skid trails as compared with machine skidding, while MSS does not differ from the other countries in ground disturbance at logging roads and log landings.
DOI: 10.6084/m9.figshare.20072734
title: Characterization of the complete chloroplast genome of <i>Abies sachalinensis</i> and its intraspecific variation hotspots

description: <i>Abies sachalinensis</i> is a major coniferous species in Hokkaido, Japan, with both ecological and economic importance. This study is the first to report the complete chloroplast (cp) genome sequence of <i>A. sachalinensis</i> and to identify its intraspecific genomic variants. Plant samples were collected from three geographically separated origins (the eastern margin, western region, and high-altitude zone of Hokkaido). High-throughput sequencing was used to reconstruct the complete sequences from enriched cpDNAs and to identify variations in the cp genome. The length of the complete circular cp genome sequence was found to range from 121,265 to 121,337 bp. Furthermore, 94 genomic variants were detected, which were composed of 52 single nucleotide polymorphism sites (SNP; 55%), nine insertion/deletion sites (In/Del; 10%), and 33 simple sequence repeat sites (SSR; 35%). Nucleotide diversity was 0.00029 on average, representing three SNP hotspot regions. The characterization of the cpDNA-wide variation reported in this study will be valuable for future phylogenetic studies of <i>A. sachalinensis</i>.
DOI: 10.6084/m9.figshare.20072734.v1
title: Characterization of the complete chloroplast genome of <i>Abies sachalinensis</i> and its intraspecific variation hotspots

description: <i>Abies sachalinensis</i> is a major coniferous species in Hokkaido, Japan, with both ecological and economic importance. This study is the first to report the complete chloroplast (cp) genome sequence of <i>A. sachalinensis</i> and to identify its intraspecific genomic variants. Plant samples were collected from three geographically separated origins (the eastern margin, western region, and high-altitude zone of Hokkaido). High-throughput sequencing was used to reconstruct the complete sequences from enriched cpDNAs and to identify variations in the cp genome. The length of the complete circular cp genome sequence was found to range from 121,265 to 121,337 bp. Furthermore, 94 genomic variants were detected, which were composed of 52 single nucleotide polymorphism sites (SNP; 55%), nine insertion/deletion sites (In/Del; 10%), and 33 simple sequence repeat sites (SSR; 35%). Nucleotide diversity was 0.00029 on average, representing three SNP hotspot regions. The characterization of the cpDNA-wide variation reported in this study will be valuable for future phylogenetic studies of <i>A. sachalinensis</i>.
DOI: 10.5258/soton/d2429
title: Dataset supporting an article 'Minor embedding with Stuart-Landau oscillator networks' published in Physical Review Research

description: This is the dataset for the figures of the journal article "Minor embedding with Stuart-Landau oscillator networks" in Physical Review Research. All data is in the dataset.zip folder. Each file gives the x-y coordinate data for all or part of each subplot (as detailed in the README.txt file). The data are saved as text files containing comma-separated values. The README.txt file gives a detailed description of each text file and the associated journal article.
DOI: 10.5255/ukda-sn-855905
title: Experiences of Potential Cancer Symptom and Help Seeking during the UK COVID-19 Pandemic, 2020-2021

description: With COVID-19 at the forefront, people may not have been aware of the importance of seeking medical help for early signs of cancer or taking up screening, when available, to diagnose cancer sooner. In addition, some people may not have wanted to be referred to a hospital for diagnostic tests due to fear of catching coronavirus in the healthcare setting. COVID-19 may have also affected whether people took part in healthy behaviours that could reduce the chances of getting cancer. These factors may have led to more cancers occurring, and more cancers being diagnosed at a late stage when treatment may be less successful. To understand peoples experiences and attitudes towards potential symptoms of cancer, their help-seeking behaviours and engagement in prevention behaviours (i.e. smoking, diet, exercise, alcohol consumption) during the pandemic we carried out a large study in adults aged 18+ across the UK. We aimed to include adults from a range of different backgrounds. Working closely with Cancer Research UK, we carried out an online survey with over 7,500 people to ask about any recent symptoms, cancer screening and health behaviours during the UK lockdown period. Survey questions included the time taken to visit the GP with a range of possible cancer symptoms, attitudes to cancer screening, anxiety about seeking help in the current situation, other barriers to seeking help, health behaviours including smoking, alcohol, diet and physical activity, and preferred ways of receiving public health information. The survey was repeated 6 months later to assess any changes in attitudes. We also interview 26 people (by telephone) who had taken part in the survey across two timepoints (autumn 2020 and spring 2021) to understand their attitudes and behaviours in more detail and how these changed during the course of the pandemic. Our study findings have been used to help in rapidly developing clear public health messages to encouraging people to act on the early signs of cancer, take up cancer screening when it became available and engage in healthy behaviours. Results from our study have been used to help to reduce the negative impact of COVID-19 on cancer outcomes in the longer term.
DOI: 10.6084/m9.figshare.21510690.v1
title: The sulfur solubility minimum and maximum in silicate melt

description: Data
DOI: 10.6084/m9.figshare.21510690
title: The sulfur solubility minimum and maximum in silicate melt

description: Data
DOI: 10.6084/m9.figshare.21510054
title: Protein assay analysis of colorectal cancer

description: <strong>Protein microarray screening</strong> We performed the screening using the ProtoArray v5.1 human protein microarray system (Thermo Fisher Scientific, Waltham, MA), which comprises 9375 protein species. We employed Alexa Fluor 647-anti-human IgG detection reagent to quantify the serum IgG bound to immobilized proteins and made pairwise comparisons between the 2 sample populations. The algorithm to select candidate antigens in our study determined that the antigen positivity rate in the sera of patients with CRC was more than 60%, and the positivity rate in the sera of HDs was less than 20% as described [1, 2]. <br> Ref. 1. Naito A, Hiwasa T, Tanabe N, Sanada TJ, Sugiura T, Shigeta A, Terada J, Takizawa H, Kashiwado K, Sakao S, et al. Elevated levels of autoantibodies against EXD2 and PHAX in the sera of patients with chronic thromboembolic pulmonary hypertension. PLoS One. 2019;14:e0211377. PMID: 30759165 <br> Ref. 2. Hiwasa T, Wang H, Goto K, Mine S, Machida T, Kobayashi E, Yoshida Y, Adachi A, Matsutani T, Sata M, et al. Serum anti-DIDO1, anti-CPSF2, and anti-FOXJ2 antibodies as predictive risk markers for acute ischemic stroke. BMC Medicine. 2021;19:131. doi:10.1186/s12916-021-02001-9. PMID:34103026
DOI: 10.6084/m9.figshare.21510738
title: Supplementary tables for 'Chromosomal-level genome assembly of potato tuberworm, Phthorimaea operculella: a pest of solanaceous crops'

description: <strong>Supplementary Table 1. </strong>Annotation of repeat sequences in <em>Phthorimaea operculella</em>. <strong>Supplementary Table 2. </strong>The 23 reported genomes used in this study. <strong>Supplementary Table 3.</strong> Domain annotation of <em>Phthorimaea operculella</em>. <strong>Supplementary Table 4.</strong> Annotation of pathways in <em>Phthorimaea operculella</em>. <strong>Supplementary Table 5. </strong>The discovery of insecticide-tolerance and chemosensory genes from 20 genomes with BUSCO completeness of larger than 80%. <strong>Supplementary Table 6. </strong>A total of 69,067 orthogroups for genes from these 24 genomes.
DOI: 10.6084/m9.figshare.21510693
title: Contig orders and orientations on Phthorimaea operculella chromosomes

description: Contig orders and orientations on Phthorimaea operculella chromosomes.
DOI: 10.6084/m9.figshare.21431649
title: Phthorimaea operculella genome repeat sequences annotation

description: Phthorimaea operculella genome repeat sequences annotation information. chr1-15, repetitive sequence annotated from chromosomal 1 to 15; chr16-29, repetitive sequence annotated from chromosomal 16 to 29.
DOI: 10.6084/m9.figshare.21431598
title: Gene prediction for five Lepidopteran genomes

description: Gene prediction for five genomes of Samia ricini (Sri), Dendrolimus punctatus (Dpu), Drepana arcuata (Dar), Tuta absoluta (Tab) and Carposina sasakii (Csa). 'Gene.cds', predicted nucleotide sequence of protein-coding genes; 'gene.pep', predicted amino acids of protein-coding genes; 'gene.gff', gff file for predicted protein-coding genes.
DOI: 10.34740/kaggle/dsv/4463564
title: YouTube Daily
DOI: 10.25934/pr00006479.3
title: Available IPD datapackage for study 'A Randomized, Multicenter, Double-Blind, Placebo-Controlled Phase II Study of the Efficacy and Safety of Trastuzumab Emtansine in Combination With Atezolizumab or Atezolizumab-Placebo in Patients With HER2-Positive Locally Advanced or Metastatic Breast Cancer Who Have Received Prior Trastuzumab and Taxane Based Therapy'

description: This Phase II, double-blind, randomized, placebo-controlled multicenter study will investigate the efficacy and safety of trastuzumab emtansine in combination with atezolizumab or atezolizumab-placebo in participants with HER2-positive locally advanced or metastatic BC who have received prior trastuzumab and taxane based therapy, either alone or in combination, and/or who have progressed within 6 months after completing adjuvant therapy.
DOI: 10.25934/pr00005804.5
title: Available IPD datapackage for study 'A Phase II, Multicenter, Single-Arm Study of Atezolizumab in Patients With Locally Advanced or Metastatic Urothelial Bladder Cancer'

description: This Phase II, single-arm study is designed to evaluate the effect of atezolizumab treatment in participants with locally advanced or metastatic urothelial bladder cancer. Participants will be enrolled into 1 of 2 cohorts. Cohort 1 (reported here) will consist of participants who are treatment-naïve and ineligible for cisplatin-containing chemotherapy. Cohort 2 will contain participants who have progressed during or following a prior platinum-based chemotherapy regimen. The results of the second cohort are reported separately (NCT02108652). Participants in both cohorts will be given a 1200 milligrams (mg) intravenous (IV) dose of atezolizumab on Day 1 of 21-day cycles. Treatment of participants in Cohort 1 will continue until disease progression per Response Evaluation Criteria in Solid Tumors Version 1.1 (RECIST v1.1) or unmanageable toxicity. Treatment of participants in Cohort 2 will continue until loss of clinical benefit or unmanageable toxicity.