cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.a3bmae
title: Occurrence Download

description: A dataset containing 667550 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pavo"
 ]
}

 The dataset includes 667550 records from 329 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055795-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvrwbc
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ottelia alismoides",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055840-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpcda9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ottelia alismoides",
 "Country is Honduras",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055838-250920141307145/datasets/export for details.
DOI: 10.15468/dl.c8t3av
title: Occurrence Download

description: A dataset containing 1629 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ficus variolosa)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1629 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055841-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.stpjye
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-86.37516 54.38003,-85.93375 50.73041,-78.50488 50.17292,-76.2101 54.73655,-82.37516 58.38003,-86.37516 58.38003,-86.37516 54.38003))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ursus maritimus"
 ]
}

 The dataset includes 158 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055842-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsgay9
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eustachys petraea",
 "Country is Honduras",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055843-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16029269
title: Exploring the maize transcriptional regulatory landscape through large-scale profiling of transcription factor binding sites

description: Dataset Description - Version 2

ChIPSeeker Annotation Files for 513 Transcription Factors

This supplementary dataset contains:



513TFs_ChIPSeeker_annotation_raw.zip - ChIPSeeker annotation results for 513 TF peaks (before regulatory region filtering)

513TFs_ChIPSeeker_annotation_regulatory_filtered.zip - ChIPSeeker annotation results for 513 TF peaks (after regulatory region filtering)


Note: ChIPSeeker annotations use promoter regions defined as ≤5kb from transcription start sites (TSS)

Related datasets:



Main dataset (network files, motif data, functional analysis): https://doi.org/10.5281/zenodo.16027369


Resources:



Analysis code: https://github.com/Huo-qiang/accuracy-enhanced-maize-gene-regulatory-network-mGRN

IGV browser: https://dap-seq.maize-endosperm.cn/

Raw data:



https://ngdc.cncb.ac.cn/gsa/browse/CRA022036

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201701




Citation:If you use the data or code, please cite: Huo Q., Zhang Z., Zhang K., Wang Q., Zhang W., Ye X., Lyu Q., Galbraith D.W., Ma Z., and Song R. (2025). Exploring the maize transcriptional regulatory landscape through large-scale profiling of transcription factor binding sites. Mol. Plant. 18, 1777–1798. doi: https://doi.org/10.1016/j.molp.2025.08.009
DOI: 10.15468/dl.jhdunk
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eustachys petraea",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 205 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055844-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16027368
title: Exploring the maize transcriptional regulatory landscape through large-scale profiling of transcription factor binding sites

description: Dataset Description - Version 2

ChIPSeeker Annotation Files for 513 Transcription Factors

This supplementary dataset contains:



513TFs_ChIPSeeker_annotation_raw.zip - ChIPSeeker annotation results for 513 TF peaks (before regulatory region filtering)

513TFs_ChIPSeeker_annotation_regulatory_filtered.zip - ChIPSeeker annotation results for 513 TF peaks (after regulatory region filtering)


Note: ChIPSeeker annotations use promoter regions defined as ≤5kb from transcription start sites (TSS)

Related datasets:



Main dataset (network files, motif data, functional analysis): https://doi.org/10.5281/zenodo.16027369


Resources:



Analysis code: https://github.com/Huo-qiang/accuracy-enhanced-maize-gene-regulatory-network-mGRN

IGV browser: https://dap-seq.maize-endosperm.cn/

Raw data:



https://ngdc.cncb.ac.cn/gsa/browse/CRA022036

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201701




Citation:If you use the data or code, please cite: Huo Q., Zhang Z., Zhang K., Wang Q., Zhang W., Ye X., Lyu Q., Galbraith D.W., Ma Z., and Song R. (2025). Exploring the maize transcriptional regulatory landscape through large-scale profiling of transcription factor binding sites. Mol. Plant. 18, 1777–1798. doi: https://doi.org/10.1016/j.molp.2025.08.009
DOI: 10.15468/dl.qwcusk
title: Occurrence Download

description: A dataset containing 419 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ficus vasculosa)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 419 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055845-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22ukzd
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Batis maritima",
 "Country is Honduras",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055846-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jc8p7
title: Occurrence Download

description: A dataset containing 4223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ficus virens)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4223 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055847-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxphfk
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (USA.7_1, USA.22_1, USA.20_1, USA.30_1, USA.33_1, USA.40_1, USA.46_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Tharsalea epixanthe"
 ]
}

 The dataset includes 271 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055848-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.an2z5r
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pentalinon luteum",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055850-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rurdjx
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pentalinon luteum",
 "Country is Honduras",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055849-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3pefuh
title: Occurrence Download

description: A dataset containing 3102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ficus virgata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3102 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055851-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8njpf
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Megaskepasma erythrochlamys",
 "Country is Honduras",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055852-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.va7un3
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Megaskepasma erythrochlamys",
 "Country is Seychelles",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055853-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2p4b3
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Megaskepasma erythrochlamys",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055854-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ee73ex
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Podocnemis lewyana"
 ]
}

 The dataset includes 123 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055855-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39w3fn
title: Occurrence Download

description: A dataset containing 140284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Quercus palustris"
 ]
}

 The dataset includes 140284 records from 211 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055824-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqrcv2
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Picea engelmannii"
 ]
}

 The dataset includes 107 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055856-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4zgzkn
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Firmiana hainanensis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055857-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7qkqw7
title: Occurrence Download

description: A dataset containing 1594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhizophora mangle",
 "Country is Honduras",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1594 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055858-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbrbaq
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phalanger rothschildi"
 ]
}

 The dataset includes 30 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055860-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pb5m7z
title: Occurrence Download

description: A dataset containing 9950 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinaceae",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 1960",
 "Country is United States of America"
 ]
}

 The dataset includes 9950 records from 196 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055859-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc101y22
title: CCDC 925383: Experimental Crystal Structure Determination

description: Related Article: Z. Piskuła, M. Kubicki, S. Lis|2013|Polyhedron|62|243|doi:10.1016/j.poly.2013.06.045
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc101fzg
title: CCDC 924915: Experimental Crystal Structure Determination

description: Related Article: A.T.Overton,J.M.Lopez-de-Luzuriaga,M.E.Olmos,A.A.Mohamed|2012|Organometallics|31|3460|doi:10.1021/om3001422
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc101g4n
title: CCDC 924920: Experimental Crystal Structure Determination

description: Related Article: O.T.Summerscales,T.W.Myers,L.A.Berben|2012|Organometallics|31|3463|doi:10.1021/om300242q
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1022z4
title: CCDC 925535: Experimental Crystal Structure Determination

description: Related Article: Elena I. Klimova, Marcos Flores-Alamo, Sandra Cortez Maya, Juan C. García-Ramos, Luis Ortiz-Frade, José Manuel Méndez Stivalet|2013|J.Organomet.Chem.|743|24|doi:10.1016/j.jorganchem.2013.06.003
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc101g3m
title: CCDC 924919: Experimental Crystal Structure Determination

description: Related Article: O.T.Summerscales,T.W.Myers,L.A.Berben|2012|Organometallics|31|3463|doi:10.1021/om300242q
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc101gbv
title: CCDC 924926: Experimental Crystal Structure Determination

description: Related Article: C.Gimbert-Surinach,M.Bhadbhade,S.B.Colbran|2012|Organometallics|31|3480|doi:10.1021/om201126w
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc101gh0
title: CCDC 924931: Experimental Crystal Structure Determination

description: Related Article: A.Naka,J.Ohshita,E.Miyazaki,T.Miura,H.Kobayashi,M.Ishikawa|2012|Organometallics|31|3492|doi:10.1021/om201061x
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc101ggz
title: CCDC 924930: Experimental Crystal Structure Determination

description: Related Article: A.Naka,J.Ohshita,E.Miyazaki,T.Miura,H.Kobayashi,M.Ishikawa|2012|Organometallics|31|3492|doi:10.1021/om201061x
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc101gr8
title: CCDC 924939: Experimental Crystal Structure Determination

description: Related Article: Fengjuan Cui,Peiju Yang,Xiaojuan Huang,Xiao-Juan Yang,Biao Wu|2012|Organometallics|31|3512|doi:10.1021/om201226s
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc101gp6
title: CCDC 924937: Experimental Crystal Structure Determination

description: Related Article: Fengjuan Cui,Peiju Yang,Xiaojuan Huang,Xiao-Juan Yang,Biao Wu|2012|Organometallics|31|3512|doi:10.1021/om201226s
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc101gq7
title: CCDC 924938: Experimental Crystal Structure Determination

description: Related Article: Fengjuan Cui,Peiju Yang,Xiaojuan Huang,Xiao-Juan Yang,Biao Wu|2012|Organometallics|31|3512|doi:10.1021/om201226s
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc101gn5
title: CCDC 924936: Experimental Crystal Structure Determination

description: Related Article: Fengjuan Cui,Peiju Yang,Xiaojuan Huang,Xiao-Juan Yang,Biao Wu|2012|Organometallics|31|3512|doi:10.1021/om201226s
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc101hzj
title: CCDC 924977: Experimental Crystal Structure Determination

description: Related Article: Wenyi Li, Zhongjian Zhang, Yingming Yao, Yong Zhang, Qi Shen|2012|Organometallics|31|3499|doi:10.1021/om201164t
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17407333
title: Protocol to perform cross-ancestry local genetic correlation estimation by Logica

description: This data and code file are used as example of cross-ancestry local genetic correlation analysis.