cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27037129.v1
title: Biodiversity associations between aboveground and belowground communities in mountain forests across different climatic regions

description: 1. Aboveground and belowground interactions are essential for the assembly of forest communities and the maintenance of multiple ecosystem functions. However, there is limited understanding of how aboveground plant and belowground soil microbial communities are associated across different climatic zones and along environmental gradients.<br>2. Using comprehensive inventory data from 186 permanent plots along elevation gradients across three climate zones (subtropical, temperate-subtropical and temperate mountain forests), we examined the diversity associations between different groups of plants (woody and herbaceous) and soil microbes (fungi and bacteria).<br>3. Associations between soil fungi and plants were stronger than those between soil bacteria and plants, particularly at the beta diversity level. Moreover, we observed that associations between soil microbes and plants were more pronounced in forests at low latitudes and intermediate elevations, and were sensitive to local abiotic conditions, including climatic and edaphic variables.<br>4. Synthesis: These findings suggest that variation in climatic and edaphic conditions along environmental gradients is associated with differences in the strength of aboveground-belowground associations. In addition to direct effects of climate change, plant and soil microbial communities could thus be indirectly affected via their biotic interactions under changing environmental conditions. This could have far-reaching consequences for community assembly and ecosystem functioning.
DOI: 10.6084/m9.figshare.31389577
title: Statistical analysis of Elemental and Radiogenic Isotope Geochemistry of Lamproites and Ultra Potassic Mafic (LUPM) Rocks from Twenty-six Regions

description: This lamproite and ultra potassic mafic (LUPM) dataset consists of 844 samples: 495 of orogenic (LUPMo) provenance (14 countries); and 349 of anorogenic (LUPMa) provenance (8 countries; 12 regions). The dataset is primarily composed of samples compiled by Lustrino et al. (2016), supplemented with additional samples from Gaussberg, Antarctica (Sushchevskaya et al., 2014), northern Siberia, Russia (Ivanov et al., 2018), and Yinniugou, northeast China (Yu et al., 2025). The total dataset is divided into just two groups (LUPMa and LUPMo) based on the present-day tectonic setting of the samples. Hence, the samples from Russia and northeast China are grouped in the LUPMa group despite the transitional nature of their compositions. This data set was used in the review paper: Wood DA (2026) Geochemistry of Lamproites and Ultra Potassic Mafic Rocks Revaluated in Comparison with Global Basaltic Benchmark Compositions: A Review. See file for details of the references cited.
DOI: 10.6084/m9.figshare.31389577.v1
title: Statistical analysis of Elemental and Radiogenic Isotope Geochemistry of Lamproites and Ultra Potassic Mafic (LUPM) Rocks from Twenty-six Regions

description: This lamproite and ultra potassic mafic (LUPM) dataset consists of 844 samples: 495 of orogenic (LUPMo) provenance (14 countries); and 349 of anorogenic (LUPMa) provenance (8 countries; 12 regions). The dataset is primarily composed of samples compiled by Lustrino et al. (2016), supplemented with additional samples from Gaussberg, Antarctica (Sushchevskaya et al., 2014), northern Siberia, Russia (Ivanov et al., 2018), and Yinniugou, northeast China (Yu et al., 2025). The total dataset is divided into just two groups (LUPMa and LUPMo) based on the present-day tectonic setting of the samples. Hence, the samples from Russia and northeast China are grouped in the LUPMa group despite the transitional nature of their compositions. This data set was used in the review paper: Wood DA (2026) Geochemistry of Lamproites and Ultra Potassic Mafic Rocks Revaluated in Comparison with Global Basaltic Benchmark Compositions: A Review. See file for details of the references cited.
DOI: 10.34894/ccwsuj
title: 25.048 Gemert - Kasteel Gemert

description: De herbestemming van kasteel Gemert is als gelegenheid aangegrepen om dendrochronologisch onderzoek uit te voeren aan de donjon in de voorburcht van het kasteel.
Hiervan wordt vermoed dat deze rond 1400 of 1650 dateert.
Op 5 november 2025 is de donjon bezocht en zijn boormonsters genomen voor dendrochronologisch onderzoek. In totaal zijn tien monsters genomen uit de gebinten op de vierdieping onder de kap, en de gebinten en daksporen in de kap.
In alle gevallen gaat het om eik (Quercus spp.).
Ondanks een toereikende kwaliteit kunnen er geen dateringen gevonden worden. De metingen laten alleen in enkele gevallen onderlinge gelijkenissen zien, maar dit vertaald zich niet in verdere resultaten. Voor twee stijlen uit verdiepingsvloer kan de middelcurve 25.048.M01 gemaakt worden en in de kap zijn drie daksporen uit dezelfde boom afkomstig. Hiervoor is de middelcurve 25.048.B01 gemaakt.
DOI: 10.15468/dl.dyxj3x
title: Occurrence Download

description: A dataset containing 4530 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pelusios"
 ]
}

 The dataset includes 4530 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003546-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33baeh
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydroptila ivisa"
 ]
}

 The dataset includes 306 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003547-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7eukn
title: Occurrence Download

description: A dataset containing 80923 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Tadorna ferruginea",
 "Year 2001-2026"
 ]
}

 The dataset includes 80923 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003448-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31165083
title: COVID-19 convalescent plasma safety and efficacy analysis for biologics license application approval

description: COVID-19 convalescent plasma with high anti-SARS-CoV-2 antibody levels transfused within 6 months from donor collection was formally approved by the Food and Drug Administration in December 2024 for COVID-19 treatment in immunocompromised patients. Here we summarize the safety and efficacy data submitted for the Biologics License Application. Safety evaluation in over 100,000 individuals in the expanded access program and 24,000 in randomized controlled trials, showed no serious adverse event increases. Robust randomized controlled trials established efficacy in four distinct disease stages: outpatient, inpatient, newly mechanically ventilated, and in those immunocompromised to prevent acute disease progression or eliminate persistent viral carriage. Pharmacokinetics revealed a three-liter distribution volume with viral specific antibody effective dose near 2–50 mg. Major SARS-CoV-2 antibody-mediated antiviral actions included direct neutralization by viral-binding interference to cell receptors and fragment-crystallizable mediated antiviral effects that reduce virions. Virus neutralization correlated with high anti-Spike antibody levels and antibody levels in the top donor plasma deciles retains therapeutic neutralization against future variants. With pandemic progression, the COVID-19 convalescent plasma safety and efficacy evidence quality increased. Ultimate regulatory approval required robust randomized control efficacy data. Future infectious disease outbreaks require randomized controlled trials in the convalescent plasma roadmap.
DOI: 10.6084/m9.figshare.31165083.v1
title: COVID-19 convalescent plasma safety and efficacy analysis for biologics license application approval

description: COVID-19 convalescent plasma with high anti-SARS-CoV-2 antibody levels transfused within 6 months from donor collection was formally approved by the Food and Drug Administration in December 2024 for COVID-19 treatment in immunocompromised patients. Here we summarize the safety and efficacy data submitted for the Biologics License Application. Safety evaluation in over 100,000 individuals in the expanded access program and 24,000 in randomized controlled trials, showed no serious adverse event increases. Robust randomized controlled trials established efficacy in four distinct disease stages: outpatient, inpatient, newly mechanically ventilated, and in those immunocompromised to prevent acute disease progression or eliminate persistent viral carriage. Pharmacokinetics revealed a three-liter distribution volume with viral specific antibody effective dose near 2–50 mg. Major SARS-CoV-2 antibody-mediated antiviral actions included direct neutralization by viral-binding interference to cell receptors and fragment-crystallizable mediated antiviral effects that reduce virions. Virus neutralization correlated with high anti-Spike antibody levels and antibody levels in the top donor plasma deciles retains therapeutic neutralization against future variants. With pandemic progression, the COVID-19 convalescent plasma safety and efficacy evidence quality increased. Ultimate regulatory approval required robust randomized control efficacy data. Future infectious disease outbreaks require randomized controlled trials in the convalescent plasma roadmap.
DOI: 10.5281/zenodo.15638437
title: Intra-subtype heterogeneity shapes treatment response in KMT2A-rearranged ALL across all age groups

description: RNAseq count data from KMT2A-rearranged B-lymphoblastic leukemia (B-ALL) patients.

Data include normalized log2 counts per million (log2CPMs) from polyA-RNA-sequencing of primary patient material (bone marrow or peripheral blood) at initial diagnosis.
DOI: 10.15468/dl.rxyb65
title: Occurrence Download

description: A dataset containing 286362 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Anas poecilorhyncha",
 "Year 2001-2026"
 ]
}

 The dataset includes 286362 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003491-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9v5x4r
title: Occurrence Download

description: A dataset containing 328 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydroptila lotensis"
 ]
}

 The dataset includes 328 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003548-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dev784
title: Occurrence Download

description: A dataset listing the 144 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Estonia",
 "TaxonKey is Ranunculus"
 ]
}

 The dataset's 144 records were derived from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003520-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25505/fiz.icsd.cc2qpm02
title: CSD 2523214: Experimental Crystal Structure Determination

description: Related Article: Spencer R. Watts, Olha Pokhvata, Thimira Kandabadage, Bhushan Thipe, Xiaojian Bai, Svilen Bobev, Sviatoslav Baranets|2026|Crystals|16|137|doi:10.3390/cryst16020137
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.15638436
title: Intra-subtype heterogeneity shapes treatment response in KMT2A-rearranged ALL across all age groups

description: RNAseq count data from KMT2A-rearranged B-lymphoblastic leukemia (B-ALL) patients.

Data include normalized log2 counts per million (log2CPMs) from polyA-RNA-sequencing of primary patient material (bone marrow or peripheral blood) at initial diagnosis.
DOI: 10.15468/dl.mqqmyw
title: Occurrence Download

description: A dataset containing 63806 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Nettapus coromandelianus",
 "Year 2001-2026"
 ]
}

 The dataset includes 63806 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003505-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.14759.41122
title: Biodiversity Handbook
DOI: 10.25921/a4ev-8453
title: Organic chemical contaminants measured by PED (polyethylene device) passive water samplers deployed at Cocos Island, Guam from 2017-09-18 to 2017-10-30 (NCEI Accession 0184259)

description: The Cocos Island, Guam PEDs (polyethylene device) passive water sampler data set contains results of the analysis from Project 31181 funded by NOAA’s Coral Reef Conservation Program. The project involved NOAA National Center for Coastal Ocean Science, Guam Environmental Protection Agency and the United States Environmental Protection Agency. The data resulted from the deployment of an array of PEDs passive water samplers in the waters around Cocos Island in Cocos Lagoon, Guam. Duplicate PEDs were deployed at 26 sites by NOAA and Guam EPA personnel in September 2017, and then retrieved one month later by Guam EPA personnel. At 22 sites, the PEDs were deployed in the water column along six transects on the northwest shore of Cocos Island; an additional PED was deployed in the water column along the southeast shore. At two sites (9-1 and 9-2), PEDs were embedded in the sand along the shore, with the remaining PED (4-3 #035) embedded in the sand underwater at site 4-3.

The duplicate PEDs from each site were combined and analyzed as one sample, in an effort to increase the sensitivity of the analysis (lower detection limit). The PEDs were analyzed for a series of organic chemical contaminants including polychlorinated biphenyls (PCBs), organochlorine pesticides and petroleum hydrocarbons (PAHs), all of which are contaminants of concern in the area. The polyethylene sheets comprising the PEDs at each site was analyzed, and the results are reported as nanograms of contaminant per each analysis, or ng/ea.
DOI: 10.15468/dl.a6d6xm
title: Occurrence Download

description: A dataset containing 5861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Batrachospermum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5861 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003550-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6j7t8h
title: Occurrence Download

description: A dataset containing 513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydroptila martini"
 ]
}

 The dataset includes 513 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003552-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r3nbna
title: Occurrence Download

description: A dataset containing 10439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Notacanthus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10439 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003551-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjn7h4
title: Occurrence Download

description: A dataset containing 1773 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((6.32632 43.77389,11.48588 44.84078,10.64993 47.0164,6.32632 46.3505,6.32632 43.77389))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vespa crabro"
 ]
}

 The dataset includes 1773 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003554-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.11583/dtu.28648697
title: Source data of "High-purity and stable single-photon emission in bilayer WSe2 via phonon-assisted excitation"

description: The source data for Figs. 1,2 and 5 of "High-purity and stable single-photon emission in bilayer WSe2 via phonon-assisted excitation" are provided. The data includes experimental PL spectra, decay time, and purity measurements.
DOI: 10.11583/dtu.28648697.v1
title: Source data of "High-purity and stable single-photon emission in bilayer WSe2 via phonon-assisted excitation"

description: The source data for Figs. 1,2 and 5 of "High-purity and stable single-photon emission in bilayer WSe2 via phonon-assisted excitation" are provided. The data includes experimental PL spectra, decay time, and purity measurements.
DOI: 10.6084/m9.figshare.31376455
title: Circadian-rhythm-based dynamics of the secretome in molecular subtypes of pancreatic ductal adenocarcinoma

description: Pancreatic ductal adenocarcinoma (PDAC) lacks a reliable diagnostic biomarker, largely due to its asymptomatic onset and frequent late-stage detection, resulting in a poor 5-year survival rate. Identifying biomarkers for timely diagnosis is critical. Cancer cells display distinct protein regulation changes that drive disease hallmarks, and characterizing these across PDAC subtypes may provide insights into disease progression. In this study, a label-free quantitative (LFQ) proteomics approach using mass spectrometry (MS) was employed to profile circadian rhythm-regulated proteins in the secretome of PDAC cell lines. LFQ analysis revealed rhythmic protein regulation patterns, reflecting temporal control of biological processes in PDAC. Upregulated pathways included signal transduction, glycolysis, angiogenesis, and protein synthesis, indicating enhanced metabolic and proliferative activity. Downregulated immune pathways suggested potential immune modulation. Comparative analysis revealed subtype-specific patterns: the quasi-mesenchymal subtype exhibited higher levels of metabolic and extracellular matrix (ECM) remodeling proteins, while the classical subtype showed higher levels of ECM-degrading proteins, consistent with known phenotypic differences. These findings highlight rhythmically regulated proteins as potential subtype-specific markers in PDAC and provide a basis for future validation studies. Mass spectrometry proteomics data are available via the ProteomeXchange Consortium (PRIDE: PXD054693).
DOI: 10.6084/m9.figshare.31376455.v1
title: Circadian-rhythm-based dynamics of the secretome in molecular subtypes of pancreatic ductal adenocarcinoma

description: Pancreatic ductal adenocarcinoma (PDAC) lacks a reliable diagnostic biomarker, largely due to its asymptomatic onset and frequent late-stage detection, resulting in a poor 5-year survival rate. Identifying biomarkers for timely diagnosis is critical. Cancer cells display distinct protein regulation changes that drive disease hallmarks, and characterizing these across PDAC subtypes may provide insights into disease progression. In this study, a label-free quantitative (LFQ) proteomics approach using mass spectrometry (MS) was employed to profile circadian rhythm-regulated proteins in the secretome of PDAC cell lines. LFQ analysis revealed rhythmic protein regulation patterns, reflecting temporal control of biological processes in PDAC. Upregulated pathways included signal transduction, glycolysis, angiogenesis, and protein synthesis, indicating enhanced metabolic and proliferative activity. Downregulated immune pathways suggested potential immune modulation. Comparative analysis revealed subtype-specific patterns: the quasi-mesenchymal subtype exhibited higher levels of metabolic and extracellular matrix (ECM) remodeling proteins, while the classical subtype showed higher levels of ECM-degrading proteins, consistent with known phenotypic differences. These findings highlight rhythmically regulated proteins as potential subtype-specific markers in PDAC and provide a basis for future validation studies. Mass spectrometry proteomics data are available via the ProteomeXchange Consortium (PRIDE: PXD054693).
DOI: 10.6084/m9.figshare.31376455.v2
title: Circadian-rhythm-based dynamics of the secretome in molecular subtypes of pancreatic ductal adenocarcinoma

description: Pancreatic ductal adenocarcinoma (PDAC) lacks a reliable diagnostic biomarker, largely due to its asymptomatic onset and frequent late-stage detection, resulting in a poor 5-year survival rate. Identifying biomarkers for timely diagnosis is critical. Cancer cells display distinct protein regulation changes that drive disease hallmarks, and characterizing these across PDAC subtypes may provide insights into disease progression. In this study, a label-free quantitative (LFQ) proteomics approach using mass spectrometry (MS) was employed to profile circadian rhythm-regulated proteins in the secretome of PDAC cell lines. LFQ analysis revealed rhythmic protein regulation patterns, reflecting temporal control of biological processes in PDAC. Upregulated pathways included signal transduction, glycolysis, angiogenesis, and protein synthesis, indicating enhanced metabolic and proliferative activity. Downregulated immune pathways suggested potential immune modulation. Comparative analysis revealed subtype-specific patterns: the quasi-mesenchymal subtype exhibited higher levels of metabolic and extracellular matrix (ECM) remodeling proteins, while the classical subtype showed higher levels of ECM-degrading proteins, consistent with known phenotypic differences. These findings highlight rhythmically regulated proteins as potential subtype-specific markers in PDAC and provide a basis for future validation studies. Mass spectrometry proteomics data are available via the ProteomeXchange Consortium (PRIDE: PXD054693).
DOI: 10.17026/ar/tfckaj
title: Bureauonderzoek Landgoed Klein Leeuwenhorst

description: In december 2023 is in opdracht van Eelerwolde door Antea Group een archeologisch bureauonderzoek uitgevoerd voor drie percelen gelegen op Landgoed Klein Leeuwenhorst in Noordwijkerhout (gemeente Noordwijkerhout). Aanleiding voor het onderzoek is de aanvraag van een omgevingsvergunning. Op één van de drie percelen wordt grasland omgezet naar bollenteelt en wordt de bodem hierdoor diepgeploegd. Op twee percelen wordt bollenteelt omgezet naar grasland en is er sprake van egalisering.
description: Antea Group Archeologie-rapport 2023/326