cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7488/ds/1999
title: Comparison of forcing functions in magnetohydrodynamics

description: Results are presented of direct numerical simulations of incompressible, homogeneous magnetohydrodynamic turbulence without a mean magnetic field, subject to different kinetic forcing functions commonly used in the literature. Specifically, the forces are negative damping (which uses the large-scale field as a forcing function), a nonhelical random force, and a nonhelical static sinusoidal force (analogous to helical ABC forcing). The time evolution of the three ideal invariants (energy, magnetic helicity and cross helicity), the time-averaged energy spectra, the energy ratios and the dissipation ratios are examined. The effect of the number of grid points and Reynolds number on the performance of the forces is also considered. All three forces produce qualitatively similar steady states with some differences. In particular, the magnetic helicity is well-conserved in all cases but the sinusoidal method of energy injection has a tendency to introduce cross helicity into the system. Indeed, an ensemble of sinusoidally-forced simulations with identical parameters shows large variations in the cross helicity over long time periods, casting some doubt on the validity of the principle of ergodicity in systems where the injection of helicity cannot be controlled. Cross helicity can unexpectedly enter the system through the forcing function and must be carefully monitored. N.B. a description of the software which ran the simulations can be found in the PhD theses of the two people who designed and implemented the majority of it: Sam Yoffe ( https://arxiv.org/abs/1306.3408 ) and Moritz Linkmann respectively ( https://www.era.lib.ed.ac.uk/handle/1842/19572).
description: File descriptions are included in README.txt
DOI: 10.7488/ds/1418
title: CRAFTY EU28 Land Use | version C001-G9-C3-I1 | IPCC Scenario B1 | runID 7
title: European land use under climate change B1 (C001-G9-C3-I1/7)

description: CRAFTY (Competition for Resources between Agent Functional Types) is a large-scale ABM (Agent-based model) framework of land use change. It has been designed to allow efficient but powerful simulation of a wide range of land uses and the goods and services they produce. These simulation outputs show land use patterns in 2010, 2020, 2030, and 2040 emerging from competition under IPCC scenario B1.
description: For more information, see ReadMe.txt
DOI: 10.7488/ds/1357
title: Eco-Congregation Scotland

description: This dataset includes a geocoded list of eco-congregations in Scotland.
description: This data set provides location, name, and start date for Scottish Eco-Congregations. It was produced as a part of a research project that was jointly funded by the AHRC/ESRC (Grant Ref: AH/K005456/1) and based at the University of Edinburgh. The data is available for academic use under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) license. For full details, see: http://creativecommons.org/licenses/by-nc-sa/4.0/legalcode. Full details of data collection methods and descriptions of fields included can be found in ECS-GIS-Locations_2.9_simplified_readme.txt. The CSV file contains the locations as grid references, whereas the zip file contains the data in Shapefile format.
DOI: 10.7488/ds/1585
title: Power output, greenhouse gas emissions and associated marginal changes on the British grid 2009-2014

description: This dataset was produced for an analysis of the impacts of short-term marginal changes in demand and wind power on greenhouse gas emissions (GHG) on the grid in Great Britain. It was derived from data published in the BMRA data archive by Elexon. It includes: the total power output and GHG emissions from coal-fired and combined-cycle gas turbine power stations, which was calculated for each individual power station (or BM unit) and then aggregated for the whole of Great Britain; the resulting total system power output and GHG emissions from all types of generation; and the half-hourly marginal changes in total wind power output, system output and GHG emissions for the British grid.
description: This is one csv file with data arranged in columns with the following headers: Time,Total Coal Output (MW),Total CCGT Output (MW),Total System Output (MW),Total CO2 Emissions from Coal (t CO2eq),Total CO2 Emissions from CCGT (t CO2eq),Total System CO2 Emissions (t CO2eq),Change in Wind Power Output (GWh/h),Change in Total System Output (GWh/h),Change in System GHG Emissions (kt CO2eq/h) The data is created according to the methodology described in Thomson, R. C., G. P. Harrison and J. P. Chick, "Marginal greenhouse gas emissions displacement of wind power in Great Britain", Energy Policy, Volume 101, February 2017, Pages 201-210, ISSN 0301-4215, https://doi.org/10.1016/j.enpol.2016.11.012.
DOI: 10.7488/ds/1997
title: Interfacial rheology of sterically stabilized colloids at liquid interfaces and its effect on the stability of Pickering emulsions

description: Particle-laden interfaces can be used to stabilize a variety of high-interface systems, from foams over emulsions to polymer blends. The relation between the particle interactions, the structure and rheology of the interface, and the stability of the system remains unclear. In the present work, we experimentally investigate how micron-sized, near-hard-sphere-like particles affect the mechanical properties of liquid interfaces. In particular, by comparing dried and undried samples, we investigate the effect of aggregation state on the properties of the particle-laden liquid interface and its relation to the stability of the corresponding Pickering emulsions. Partially aggregated suspensions give rise to a soft-solid-like response under shear, whereas for stable PMMA particulate layers a liquid-like behaviour is observed. For interfacial creep-recovery measurements, we present an empirical method to correct for the combined effect of the subphase drag and the compliance of the double-wall ring geometry, which makes a significant contribution to the apparent elasticity of weak interfaces. We further demonstrate that both undried and dried PMMA particles can stabilize emulsions for months, dispelling the notion that particle aggregation, in bulk or at the interface, is required to create stable Pickering emulsions. Our results indicate that shear rheology is a sensitive probe of colloidal interactions, but is not necessarily a predictor of the stability of interfaces, e.g.~in quiescent Pickering emulsions, as in the latter the response to dilatational deformations can be of prime importance.
description: Files and sub-folders labelled by figure in corresponding paper. Standard formats (both Excel and CSV) provided. For images, .tif has been used, which can be opened for example in ImageJ freeware. As and where necessary, a readme.txt file has been included to describe the structure of the data. For figures mentioned, see corresponding paper of the same title and by the same authors.
DOI: 10.7488/ds/2063
title: OD and Fluorescent measurements for the experiments included in "An analytical approach for the calculation of promoter activities based on fluorescent protein expression data"

description: The systematic prediction and categorisation of promoters, repressors, enhancers, etc., is not only essential to unravel the inner workings of biochemical networks, but also to engineer novel synthetic ones. Each putative regulatory region, however, has to be validated experimentally in order to be categorized as a fully defined functional element, which constitutes a significant bottleneck. In most studies, the promoter activity is illustrated as the amount of fluorescence divided by the optical density. These values are obtained from a coupled time-series experiment. With relatively simple mathematical reasoning, a tool that describes promoter activity in each time point has been implemented. The protein expression and the protein maturation process are modelled as a first order differential equations taking into account the degradation and the maturation rates which are to be known in advance. The promoter activity is then expressed based on the measured quantities of optical density and fluorescence with a formula derived by mathematical manipulations of the defined quantities and the differential equations that comprise the model. The continuous expressions for fluorescence and optical density are obtained from Gaussian process regression. Validation with experimental data from several constructs showed the expected behaviour of promoter activities. The dataset consists of 3 files, 2 of them are CSV files and ready to be imported in the software tool presented in the publication and one of them is an excel file of raw data from a plate reader containing OD and fluorescent measurements.
description: - Data_for_figure_3.csv : Contains measurements of OD and Fluorescence for the constitutive promoters presented in figure 3. - Data_for_figure_4.csv: Contains measurements of OD and Fluorescence for the inducible promoters presented in figure 4. - Data_for_figure_5.csv: Contains measurements of OD and Fluorescence for the constitutive promoter and stable/unstable GFP presented in figure 5.
DOI: 10.7488/ds/1431
title: GPI null mouse chimaera data_Biology Open paper 2016

description: The data are numerical data used to produce Figs. 3, 6 and 7 in Keighren MA, Flockhart JH and West JD, 2016 Survival of glucose phosphate isomerase null somatic cells and germ cells in adult mouse chimaeras. Biology Open 5, 596-610. Doi 10.1242/bio.017111. Experiments involved production and analysis of Gpi1-/-↔Gpi1c/c mouse chimaeras. Some homozygous Gpi1-/- null somatic cells, lacking the glycolytic enzyme, glucose phosphate isomerase, survived in mouse chimaeras. Breeding experiments showed that some GPI-null oocytes and spermatozoa were viable and functional.
DOI: 10.7488/ds/1556
title: LIMO EEG Dataset

description: The Dataset is a subset of subjects from the paper linked here. Those 18 subjects are known as the 'LIMO EEG Dataset'. Subject 1 has the data in full allowing to experiment with data import in the LIMO EEG toolbox. Other subjects have the imported data only.
DOI: 10.7488/ds/1415
title: Non-fibrillar oligomeric amyloid-β within synapses: Data set from publication Pickett et al 2016 J Alz Dis

description: Alzheimer’s disease (AD) is characterized by memory loss, insidious cognitive decline, profound neurodegeneration and the extracellular accumulation of amyloid-beta (Ab) peptide in senile plaques and intracellular accumulation of tau in neurofibrillary tangles. Loss and dysfunction of synapses are believed to underlie the devastating cognitive decline in AD. A large amount of evidence suggests that oligomeric forms of Ab associated with senile plaques are toxic to synapses, but the precise sub-synaptic localization of Ab and which forms are synaptotoxic remain unknown. Here, we characterize the sub-synaptic localization of Ab oligomers using three high-resolution imaging techniques, stochastic optical reconstruction microscopy, immunogold electron microscopy and Förster resonance energy transfer in a plaque-bearing mouse model of Alzheimer’s disease. With all three techniques, we observe oligomeric Ab inside synaptic terminals. Further, we tested a panel of Ab antibodies using the relatively high-throughput array tomography technique to determine which forms are present in synapses. Our results show that different oligomeric Ab species are present in synapses and highlight the potential of array tomography for rapid testing of aggregation state specific Ab antibodies in brain tissue.
DOI: 10.7488/ds/1470
title: Lothian Buses Full Fleet GPS Traces, 2014 to 2015

description: These datasets have been collected and provided to us by Lothian Buses. They consist of Automatic Vehicle Location (AVL) data obtained using periodic GPS location measurements. Each data entry consists of a bus identifier, a location measurement and a measurement timestamp. The location data are given in Ordnance Survey for Great Britain (OSGB) eastings and northings rather than latitude/longitude coordinates. Each dataset contains information about Lothian Buses' full fleet of vehicles at the time, which from October 2014 onward includes Lothian Buses' fleet of trams (which have vehicle numbers ranging from 251 to 277). The main dataset covers the period between 28th January 2014 at 11:31:14 and 30th January 2014 at 12:38:31. Additionally, there are two related datasets covering selected days in October 2014 and January 2015.
DOI: 10.7488/ds/1469
title: SUPERSEDED - Archaeological Site Dataset for the Jazira Region of Syria
title: GIS

description: This archaeological dataset complements 13 other datasets as part of a study that compared ancient settlement patterns with modern environmental conditions in the Jazira region of Syria. This study examined settlement distribution and density patterns over the past five millennia using archaeological survey reports and French 1930s 1:200,000 scale maps to locate and map archaeological sites. An archaeological site dataset was created and compared to and modelled with soil, geology, terrain (contour), surface and subsurface hydrology and normal and dry year precipitation pattern datasets; there are also three spreadsheet datasets providing 1963 precipitation and temperature readings collected at three locations in the region. The environmental datasets were created to account for ancient and modern population subsistence activities, which comprise barley and wheat farming and livestock grazing. These environmental datasets were subsequently modelled with the archaeological site dataset, as well as, land use and population density datasets for the Jazira region. Ancient trade routes were also mapped and factored into the model, and a comparison was made to ascertain if there was a correlation between ancient and modern settlement patterns and environmental conditions; the latter influencing subsistence activities. This archaeological dataset was generated to show settlement distribution patterns in the Jazira region of Syria. The sites were mapped using publications of surveys conducted and the French 1:200,000 maps. The French maps include the identification of sites using toponyms called 'Tells'. The temporal extent of the archaeological sites in this dataset span from the Neolithic to Islamic periods of Syria. The extent of the archaeological site dataset comprises an area within the Syrian Jazira, which lies between the Syrian and Turkish border in the north; the Syrian and Iraqi border to the east, including the River Tigris; and to the River Euphrates to the south and west. All related data collected was confined within this area with the exception of this archaeological dataset. Archaeological sites were identified and mapped along both banks of the River Euphrates. ArcGIS Shapefiles.
description: ArcGIS Shapefiles (in zip file) 1) sites.dbf 2) sites.sbn 3) sites.sbx 4) sites.shp 5) sites.shx Metadata record: 1) metadata_mets.xml
DOI: 10.7488/ds/1358
title: Coupling heterogeneous continuum-particle fields to simulate non-isothermal microscale gas flows

description: This data folder contains the direct simulation Monte Carlo (DSMC) case directories and data generated from multiscale and full-DSMC simulations.
description: The DSMC simulations use the standard folder and file format of OpenFOAM; see www.openfoam.org for more information on how cases are setup, how to use the dictionaries (i.e. the input files) etc. Formats in this data-share folder: * .sh linux execution scripts * .mat, .m matlab files * .eps images * .gp gnuplot batch scripts (for producing images) All other files (including those that do not contain an extension) are text files and can be viewed using standard text editors. The zip file 'HighSpeedCouette.zip' contains data for the section of the paper: "1D validation: high-speed micro Couette flow" in the following folders: * Full DSMC validation case: FullDSMCCouette * Multiscale simulations: Pi=2 Pi=3 Pi=4 * Gnuplot post-processing scripts: GnuplotPostProc_Combined The zip file 'TwoDimensionalCrack.zip' contains data for the section of the paper: "2D validation: flow through a microscale crack-type geometry" in the following folders/files: * Full DSMC validation case: FullDSMCCrackTempGradX.zip * Multiscale simulation (subdomain cases and matlab scripts): Kn1_crackProblemTempGradXBulk * Gnuplot post-processing scripts: GnuplotPostProc.zip * Back-up storage of data array elements produced by matlab scripts for the multiscale simulation: matlabScripts
DOI: 10.7488/ds/1467
title: An evaluation of noise reduction algorithms for particle-based fluid simulations in multi-scale applications

description: This dataset contains data from reported molecular dynamics (MD) and dissipative particle dynamics (DPD) simulations. Results and system files are grouped into subfolders corresponding to the following cases: * “convDivChannelMD” contains files from the MD simulations of flow through a convering-diverging channel; * “flowCNTMD” contains files from the MD simulation of water flow through a carbon nanotube; * “phaseSeparationDPD” contains files from the DPD simulations of a phase separation phenomenon.
DOI: 10.7488/ds/1475
title: Multiscale Simulation of Enhanced Flow in Nanotubes of Different Materials
DOI: 10.7488/ds/1360
title: Quantitative morphological characterization of bicontinuous Pickering emulsions via interfacial curvatures

description: Bicontinuous Pickering emulsions (bijels) are a physically interesting class of soft materials with many potential applications including catalysis, microfluidics and tissue engineering. They are created by arresting the spinodal decomposition of a partially-miscible liquid with a (jammed) layer of interfacial colloids. Porosity L (average interfacial separation) of the bijel is controlled by varying the radius (r) and volume fraction (f) of the colloids (L ~ r/f). However, to optimize the bijel structure with respect to other parameters, e.g. quench rate, characterizing by L alone is insufficient. Hence, we have used confocal microscopy and X-ray CT to characterize a range of bijels in terms of local and area-averaged interfacial curvatures; we further demonstrate that bijels are bicontinuous using an image-analysis technique known as `region growing'. In addition, the curvatures of bijels have been monitored as a function of time, which has revealed an intriguing evolution up to 60 minutes after bijel formation, contrary to previous understanding.
description: See README file(s), folder names and file names; files grouped by figure in the corresponding paper.
DOI: 10.7488/ds/1996
title: Thesis Material - Rasmus Dall

description: Data released in relation to the PhD thesis of Rasmus Dall. This contains: 1. Thesis pdf. 2. Released parallel corpora of read and spontaneous speech suitable for speech synthesis. 3. Experimental Data to enable replication. 4. Speech samples referred to in thesis.
DOI: 10.7488/ds/1588
title: Magnetic data for the two compounds in the paper "Self-assembly of the tetrachlorido(oxalato)rhenate(IV) anion with protonated organic cations: X-ray structures and magnetic properties", published in the journal CrystEngComm
DOI: 10.7488/ds/1423
title: CRAFTY EU28 Land Use | version C001-G9-C3-I1 | IPCC Scenario A1 | runID 3
title: European land use under climate change A1 (C001-G9-C3-I1/3)

description: CRAFTY (Competition for Resources between Agent Functional Types) is a large-scale ABM (Agent-based model) framework of land use change. It has been designed to allow efficient but powerful simulation of a wide range of land uses and the goods and services they produce. These simulation outputs show land use patterns in 2010, 2020, 2030, and 2040 emerging from competition under IPCC scenario A1.
description: For more information, see ReadMe.txt.
DOI: 10.7488/ds/1356
title: ## SUPERSEDED: THIS DATASET HAS BEEN REPLACED. ## Noisy speech database for training speech enhancement algorithms and TTS models

description: ## SUPERSEDED: THIS DATASET HAS BEEN REPLACED by the one which can be found at https://doi.org/10.7488/ds/2117. ## Clean and noisy parallel speech database. The database was designed to train and test speech enhancement methods that operate at 48kHz. A more detailed description can be found in the paper associated with the database. Some of the noises were obtained from the Demand database, available here: http://parole.loria.fr/DEMAND/ The speech database was obtained from the Voice Banking Corpus, available here: http://homepages.inf.ed.ac.uk/jyamagis/release/VCTK-Corpus.tar.gz
description: The files are wav format audio data sampled at 48kHz. Each file contains a sentence recorded by a range of speakers in quiet studio conditions. This audio material was added to a range of different noise signals, constituting the parallel noisy dataset. Accompanying each audio file there is a text file containing the orthographic transcription of what was said in that particular audio sample.
DOI: 10.7488/ds/1361
title: Organometallic neptunium(III) complexes
title: neptunium(II) and neptunium(III)

description: Studies of transuranic organometallic complexes provide particularly valuable insight into covalent contributions to the metal-ligand bonding, in which the subtle differences between the transuranium actinide ions and their lighter lanthanide counterparts are of fundamental importance for effective remediation of nuclear waste. Unlike the organometallic chemistry of uranium, which has focused strongly on UIII and has seen some spectacular advances, that of the transuranics is significantly technically more challenging and has remained dormant. In the case of neptunium, it is limited mainly to NpIV. Here we report the synthesis of three new NpIII organometallic compounds, and the characterization of their molecular and electronic structures. These studies suggest that NpIII complexes could act as single molecule magnets, and that the lower oxidation state of NpII is chemically accessible. Significant d- and f-electron contributions to key NpIII orbitals are observed, in comparison with lanthanide analogues, showing that fundamental neptunium organometallic chemistry can provide new insight into the behaviour of f-elements.
DOI: 10.7488/ds/1480
title: Hard-soft chemistry of Sr1-xCaxCrO3-δ solid solutions

description: Raw data and cif refinement files for Rietveld analysis of powder X-ray diffraction data of the title compounds.
DOI: 10.7488/ds/1372
title: Datasets for Journal of Biomedical Optics paper - "Two-color widefield fluorescence microendoscopy enables multiplexed molecular imaging in the alveolar space of human lung tissue"

description: Two-color widefield fluorescence microendoscopy enables multiplexed molecular imaging in the alveolar space of human lung tissue.
description: See readme.txt file.
DOI: 10.7488/ds/2937
title: Forced Oscillation Dynamics of Surface Nanobubbles

description: This data set provides the molecular dynamics simulation results and template LAMMPS setup cases for the research we present in the paper accepted by the Journal of Chemical Physics under the same title as this data set.
DOI: 10.7488/ds/201
title: A test-retest fMRI dataset for motor, language and spatial attention functions

description: A test-retest dataset was acquired to validate fMRI tasks used in pre-surgical planning. In particular, five task-related fMRI time series (finger, foot and lip movement, overt verb generation, covert verb generation, overt word repetition, and landmark tasks) were used to investigate which protocols gave reliable single-subject results. Ten healthy participants in their fifties were scanned twice using an identical protocol 2-3 days apart. In addition to the fMRI sessions, high-angular resolution diffusion tensor MRI (DTI), and high-resolution 3D T1-weighted volume scans were acquired. Scanner type: GE Signa HDxt 1.5T. OpenFMRI accession no. ds000114.
description: Documentation of the file structure and metadata at: https://doi.org/10.7488/ds/283