DOI: 10.6084/m9.figshare.3486866.v1
title: Data set - Causes and outcomes of sepsis in southeast Asia: a multinational multicentre cross-sectional study (NCT02157259)

description: This is an observational study to identify the etiology, management, and outcome of community-acquired sepsis and severe sepsis in children and adults in Southeast Asia. The study will take place in Thailand, Vietnam, and Indonesia, the partner countries of SEAICRN. Potential study patients will be any patients (both children and adults) who are presented at the hospital with community-acquired sepsis or severe sepsis and require hospitalization.<br>The fields contained in the database are as follows:1. <b>id</b>: Unique identifier for each patient2. <b>country</b>: The code of the country where each study hospital locates; 2 defines Thailand, 3 defines Vietnam and 4 defines Indonesia3. <b>site</b>: The code of each study hospital4. <b>gender</b>: The gender of patients5. <b>age_group_1</b>: The age group of patients Children and Adults6. <b>age_group_2</b>: The age group of patients; 1 mo - &lt;1 year, ≥1 - &lt;5 years, ≥5 - &lt;18 years, ≥18 - &lt;40 years, ≥40 - &lt;60 years and ≥60 years old 7. <b>severe_sepsis</b>: severe sepsis defined by Surviving Sepsis Campaign 2012 for adult patients, and by International paediatric sepsis consensus conference 2005 for paediatric patients8. <b>severe_sofa</b>: sepsis defined by having SOFA score more than or equal to 2 according to the 2014 task force for adult patients; missing value for paediatric patients9. <b>mortality28</b>: 28-day mortality outcome. Mortality outcome was not available in 19 children and 5 adults who withdrew from the study prior to 28-day follow-up, and in another 13 children and 6 adults who could not be contacted for 28-day outcome.10. <b>group1_ari</b>: 1 defines patients who had clinical presentations of acute respiratory infection11. <b>group2_dia</b>: 1 defines patients who had clinical presentations of acute diarrhoea12. <b>group3_cns</b>: 1 defines patients who had clinical presentations of acute CNS infection13. <b>group1_si</b>: 1 defines patients who had clinical presentations of acute systematic infection<br>The following variables represent patients who had pathogens or diseases identified based on a set of diagnostic tests used as described in the main manuscript. 14. <b>any_pathogen</b>: 1 defines patients who had at least one pathogen defined and 0 defines patients who had no pathogen defined15. <b>bact_01_typhi</b>: 1 defines patients who had <i>Salmonella typhi</i>16. <b>bact_02_nontyphi</b>: 1 defines patients who had non-typhi <i>Salmonella</i>17. <b>bact_11_ecoli</b>: 1 defines patients who had<i> Escherichia coli</i>18. <b>bact_12_k_pneumo</b>: 1 defines patients who had <i>Klebsiella pneumoniae</i>19. <b>bact_13_k_spp</b>: 1 defines patients who had <i>Klebsiella</i> spp20. <b>bact_14_enterobacter</b>: 1 defines patients who had <i>Enterobacter</i> spp21. <b>bact_15_proteus</b>: 1 defines patients who had <i>Proteus</i> spp22. <b>bact_16_citrobacter</b>: 1 defines patients who had <i>Citrobacter</i> spp23. <b>bact_17_shigella</b>: 1 defines patients who had <i>Shigella</i> spp24. <b>bact_21_acineto</b>: 1 defines patients who had <i>Acinetobacter</i> spp25. <b>bact_22_acrhomobacter</b>: 1 defines patients who had <i>Achromobacter</i> spp26. <b>bact_23_aeromonas</b>: 1 defines patients who had <i>Aeromonas</i> spp27. <b>bact_24_haemophillus</b>: 1 defines patients who had <i>Haemophilus</i> spp28. <b>bact_25_campylobacter</b>: 1 defines patients who had <i>Campylobacter</i> spp29. <b>bact_26_vibrio</b>: 1 defines patients who had <i>Vibrio</i> spp30. <b>bact_27_pseudo</b>: 1 defines patients who had <i>Pseudomonas</i> spp31. <b>bact_28_melioid</b>: 1 defines patients who had <i>Burkholderia pseudomallei</i>32. <b>bact_31_legionella</b>: 1 defines patients who had <i>Legionella pneumophila </i>33. <b>bact_32_c_pneumonia</b>: 1 defines patients who had <i>Chlamydophila pneumoniae</i> 34. <b>bact_33_c_psittaci</b>: 1 defines patients who had <i>Chlamydophila psittaci</i> 35. <b>bact_34_bordetella</b>: 1 defines patients who had <i>Bordetella pertussis </i>36. <b>bact_35_neisseria</b>: 1 defines patients who had <i>Neisseria meningitidis</i>37. <b>bact_36_other_gn</b>: 1 defines patients who had other Gram-negative bacteria38. <b>bact_41_aerues</b>: 1 defines patients who had <i>Staphlococcus aureus</i>39. <b>bact_42_strep_pneumo</b>: 1 defines patients who had <i>Streptococcus pneumoniae</i>40. <b>bact_43_strep_suis</b>: 1 defines patients who had <i>Streptococcus suis</i>41. <b>bact_44_strep_spp</b>: 1 defines patients who had beta-hemolytic <i>Streptococcus</i> spp42. <b>bact_45_clostridium</b>: 1 defines patients who had <i>Clostridium difficile</i>43. <b>bact_46_other_gp</b>: 1 defines patients who had other Gram-positive bacteria44. <b>bact_51_lepto</b>: 1 defines patients who had leptospirosis45. <b>bact_52_scrub</b>: 1 defines patients who had scrub typhus46. <b>bact_53_murine</b>: 1 defines patients who had murine typhus47. <b>bact_54_sfg</b>: 1 defines patients who had spotted fever group 48. <b>bact_55_mycoplasma</b>: 1 defines patients who had <i>Mycoplasma pneumoniae</i>49. <b>bact_56_tb</b>: 1 defines patients who had <i>Mycobacterium tuberculosis</i>50. <b>virus_01_dengue</b>: 1 defines patients who had Dengue virus51. <b>virus_02_hanta</b>: 1 defines patients who had Hantavirus52. <b>virus_11_influenza</b>: 1 defines patients who had Influenza virus53. <b>virus_12_adeno</b>: 1 defines patients who had Adenovirus54. <b>virus_13_entero</b>: 1 defines patients who had Enterovirus55. <b>virus_14_rsv</b>: 1 defines patients who had Respiratory syncytial virus56. <b>virus_15_metapneumo</b>: 1 defines patients who had Metapneumovirus 57. <b>virus_16_rhino</b>: 1 defines patients who had Rhinovirus58. <b>virus_17_para</b>: 1 defines patients who had Parainfluenza virus59. <b>virus_18_corona</b>: 1 defines patients who had Coronavirus60. <b>virus_19_boca</b>: 1 defines patients who had Bocavirus61. <b>virus_20_parecho</b>: 1 defines patients who had Parechovirus62. <b>virus_21_hsv</b>: 1 defines patients who had Herpes simplex virus63. <b>virus_22_vzv</b>: 1 defines patients who had Varicella zoster virus64. <b>virus_23_mumps</b>: 1 defines patients who had Mumps65. <b>virus_24_measles</b>: 1 defines patients who had Measles66. <b>virus_25_rubella</b>: 1 defines patients who had Rubella67. <b>virus_26_je</b>: 1 defines patients who had Japanese encephalitis virus68. <b>virus_27_ebv</b>: 1 defines patients who had Epstein-Barr virus65. <b>virus_28_cmv</b>: 1 defines patients who had Cytomegalovirus66. <b>virus_31_astro</b>: 1 defines patients who had Astrovirus67. <b>virus_32_noro</b>: 1 defines patients who had Norovirus68. <b>virus_33_rota</b>: 1 defines patients who had Rotavirus69. <b>fungus_01_candida</b>: 1 defines patients who had <i>Candida</i> spp70. <b>fungus_02_cryptococcus</b>: 1 defines patients who had <i>Cryptococcus</i> spp71. <b>parasite_01_malaria</b>: 1 defines patients who had Malaria72. <b>parasite_02_cryptosporidium</b>: 1 defines patients who had <i>Cryptosporidium</i> spp73. <b>parasite_03_strongyloid</b>: 1 defines patients who had <i>Stronglyloides stercorali</i>s74. <b>parasite_04_e_histo</b>: 1 defines patients who had <i>Entamoeba histolytica</i> <br>