cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0114617.10fu
title: SH0114617.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive122935.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122935.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0114618.10fu
title: SH0114618.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive122936.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122936.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0114619.10fu
title: SH0114619.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive122937.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122937.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0114620.10fu
title: SH0114620.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive122938.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0114621.10fu
title: SH0114621.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.1594/pangaea.966611
title: Prokariotic abundances during a multi-stressor aquaria experiment with the cold-water coral Dendrophyllia cornigera

description: A 9-month aquarium experiment with the cold-water Dendrophyllia cornigera was conducted to investigate the single and combined effects of warming, acidification and deoxygenation on its ecophysiological response. The experiment took place at the Aquarium finisterrae (A Coruña, Spain) between 2022-05-06 and 2023-02-24. Treatment values for each parameter (current in situ vs. climate change) were: 12 °C and 15 °C (temperature); ~7.99 and 7.69 (pH); ~8.63 mg/L and 6.45 mg/L (dissolved oxygen concentration). A total of eight treatments (with 3 replicates each, 5 L aquaria) were set up. Prokaryotes were quantified by flow citometry (CytoFLEXflex S, Beckman Coulter) as previously described by Gasol et al. (1999) with our own adjustment of the scatter settings to more accurately resolve these cells with the new CytoFLEX flow cytometry technology. Measurements were performed every month from different parts of the aquaria setup: the input seawater, the reservoir tank (after the filtration of seawater to 5 µm and before the UV lamp) and every experimental aquaria.
DOI: 10.1594/pangaea.966668
title: Carbonate chemistry of an aquaria setup during a multi-stressor experiment with the cold-water coral Dendrophyllia cornigera

description: A 9-month aquarium experiment with the cold-water Dendrophyllia cornigera was conducted to investigate the single and combined effects of warming, acidification and deoxygenation on its ecophysiological response. The experiment took place at the Aquarium finisterrae (A Coruña, Spain) between 2022-05-06 and 2023-02-24. Treatment values for each parameter (current in situ vs. climate change) were: 12 °C and 15 °C (temperature); ~7.99 and 7.69 (pH); ~8.63 mg/L and 6.45 mg/L (dissolved oxygen concentration). A total of eight treatments (with 3 replicates each, 5 L aquaria) were set up. Measurements for pH and total alkalinity (TA) were performed on seawater samples from all the experimental aquaria every 1 – 2 months. Samples for pH were directly collected on cylindrical 10 cm cuvettes and analysed on daily basis. After being thermostated at 25ºC, samples were measured using a manual spectrophotometrical procedure with a Sigma Aldrich impure indicator (Clayton and Byrne, 1993). TA was measured following the double end point potentiometric technique by Pérez and Fraga (1987a) and Pérez et al. (2000). Measurements of Certified Reference Material (Dickson's lab, SIO) were performed in order to control the accuracy of the TA measurements. The uncertainty of TA and pH is about 3 μmol/kg and 0.005 pH units, respectively. In situ additional CO2 system variables were calculated using the R package seacarb (Gattuso et al. 2023) using in situ temperature, salinity, measured pH and TA, the dissociation constants of carbonic acid in seawater (K1 and K2) by Lueker et al. (2000), the equilibrium constant of hydrogen fluoride by Perez and Fraga (1987b), the concentration of total boron by Uppström (1974) formulation, and the stability constant of hydrogen sulphate by Dickson (1990). Mean values for the concentration of silicate and phosphate on the aquaria experiments were used in the CO2 calculations, respectively, mean (and standard) deviations as 2.1 (0.4) and 0.31 (0.03) μmol/kg.
DOI: 10.1594/pangaea.966672
title: Water parameters registered over 24 hours by a Raspberry-based controller during a multi-stressor aquarium experiment

description: A 9-month aquarium experiment with the cold-water Dendrophyllia cornigera was conducted to investigate the single and combined effects of warming, acidification and deoxygenation on its ecophysiological response. The experiment took place at the Aquarium finisterrae (A Coruña, Spain) between 2022-05-06 and 2023-02-24. Treatment values for each parameter (current in situ vs. climate change) were: 12 °C and 15 °C (temperature); ~7.99 and 7.69 (pH); ~8.63 mg/L and 6.45 mg/L (dissolved oxygen concentration). A total of eight treatments (with 3 replicates each, 5 L aquaria) were set up. Raspberry-based controllers were set to modify and monitor the water temperature, pH and dissolved oxygen in every treatment. Values for temperature (ºC), pH (NBS scale) and oxygen (% air saturation) were registered every 15 minutes in a database. The parameters were measured using PT100 temperature sensors, and Atlas Scientific Lab Grade pH and Dissolved Oxygen sensors. Every set of sensors was placed on each header tank, corresponding to each treatment (8 in total). Parameter setpoint values for each header tank were finely adjusted on the controller to ensure the treatment target values on each experimental aquaria. Oxygen sensors from treatments with ambient oxygen (~8.63 mg/L) were removed from the system due to calibration issues. Here, an example of the results for temperature, pH and oxygen for every header tank over 24 hours on 31st of December 2022 is presented. Values for pH (total scale) and dissolved oxygen (mg/L) were calculated using AquaEnv (Hofmann et al. 2010) and respR (Harianto et al. 2019) R packages, respectively, using the in situ temperature and salinity (35.1).
DOI: 10.1594/pangaea.966673
title: Water physico-chemical variables during a long-term multi-stressor aquarium experiment with the cold-water coral Dendrophyllia cornigera

description: A 9-month aquarium experiment with the cold-water Dendrophyllia cornigera was conducted to investigate the single and combined effects of warming, acidification and deoxygenation on its ecophysiological response. The experiment took place at the Aquarium finisterrae (A Coruña, Spain), from the 6th of May 2022 to the 24th of February 2023. Treatment values for each parameter (current in situ vs. climate change) were: 12 °C and 15 °C (temperature); ~7.99 and 7.69 (pH); ~8.63 mg/L and 6.45 mg/L (dissolved oxygen concentration). A total of eight treatments (with 3 replicates each, 5 L aquaria) were set up. This dataset contains the registered values for temperature, pH, DO (% air saturation and mg/L) and sainity from the experimental aquarium over the course of the experiment. Temperature and DO were daily measured with a YSI ProODO dissolved oxygen instrument. Salinity was weekly assessed with a WTW 350i multiparameter device equipped with a ConOx probe. Measurements for pH were performed every 1 – 2 months. Samples for pH were directly collected on cylindrical 10 cm cuvettes and analysed on daily basis. After being thermostated at 25ºC, samples were measured using a manual spectrophotometrical procedure with a Sigma Aldrich impure indicator (Clayton and Byrne, 1993). The uncertainty of pH is about 0.005 pH units.
DOI: 10.1594/pangaea.966744
title: Skeletal growth rates of the cold-water coral Dendrophyllia cornigera from a long-term multi-stressor experiment

description: A 9-month aquarium experiment with the cold-water Dendrophyllia cornigera was conducted to investigate the single and combined effects of warming, acidification and deoxygenation on its ecophysiological response. The experiment took place at the Aquarium finisterrae (A Coruña, Spain) between 2022-05-06 and 2023-02-24. Treatment values for each parameter (current in situ vs. climate change) were: 12 °C and 15 °C (temperature); ~7.99 and 7.69 (pH); ~8.63 mg/L and 6.45 mg/L (dissolved oxygen concentration). A total of eight treatments (with 3 replicates each, 5 L aquaria) were set up. Dry mass of the coral nubbins (3 per experimental aquarium) was assessed by means of the buoyant weight technique (Jokiel et al. 1978, Davies, 1989), using an analytical balance (OHAUS AX124, precision 0.1 mg). The dry mass was calculated considering the nubbin net weight in water, the water density and the skeletal density of D. cornigera (2.63 g/cm3; Movilla et al. 2014). Measurements were performed just once the acclimation time finished and after 2 , 4, 6 and 9 months under the experimental conditions. Skeletal growth rates were calculated as the slope of the linear regression between the logarithmically transformed dry mass and the experimental time (%/day) (Orejas et al. 2011).
DOI: 10.1594/pangaea.966748
title: Respiration rates of the cold-water coral Dendrophyllia cornigera from a long-term multi-stressor experiment

description: A 9-month aquarium experiment with the cold-water Dendrophyllia cornigera was conducted to investigate the single and combined effects of warming, acidification and deoxygenation on its ecophysiological response. The experiment took place at the Aquarium finisterrae (A Coruña, Spain) between 2022-05-06 and 2023-02-24. Treatment values for each parameter (current in situ vs. climate change) were: 12 °C and 15 °C (temperature); ~7.99 and 7.69 (pH); ~8.63 mg/L and 6.45 mg/L (dissolved oxygen concentration). A total of eight treatments (with 3 replicates each, 5 L aquaria) were set up. Respiration rates from each nubbin (3 per aquarium) were assessed after 6 and 9 months under the experimental conditions by means of closed-cell incubations. Oxygen consumption was calculated by measuring the dissolved oxygen concentration of the seawater inside the chamber using an optical oxygen sensor (YSI ProODO) at the beginning and at the end of the incubation time (24 h incubation). Dry mass (g) of the coral nubbins was assessed by means of the buoyant weight technique (Jokiel et al. 1978, Davies, 1989), using an analytical balance (OHAUS AX124, precision 0.1 mg). Tissue surface area (cm2) was assessed on virtual 3D models of each nubbin at the time when the measurements were conducted. Respiration rates were normalised by dry mass and by tissue surface area.
DOI: 10.1594/pangaea.978153
title: Skeletal growth rates of the cold-water coral Dendrophyllia cornigera for each time interval of a long-term multi-stressor experiment

description: A 9-month aquarium experiment with the cold-water Dendrophyllia cornigera was conducted to investigate the single and combined effects of warming, acidification and deoxygenation on its ecophysiological response. The experiment took place at the Aquarium finisterrae (A Coruña, Spain) between 2022-05-06 and 2023-02-24. Treatment values for each parameter (current in situ vs. global change) were: 12 °C and 15 °C (temperature); ~7.99 and 7.69 (pH); ~8.63 mg/L and 6.45 mg/L (dissolved oxygen concentration). A total of eight treatments (with 3 replicates each, 5 L aquaria) were set up. Inside each aquarium, 3 nubbins of D. cornigera were placed. Skeletal growth for each nubbin was assessed using the buoyant weight technique (Jokiel et al. 1978, Davies, 1989) with an analytical balance (OHAUS AX124, precision 0.1 mg). Dry mass of each nubbin was determined based on the net weight in water, water density and the skeletal density of D. cornigera (2.63 g/cm3, Movilla et al. 2014). Corals were weighted at the end of acclimation and after 2, 4, 6 and 9 months (56, 11, 181 and 267 days, respectively) under the experimental conditions. Skeletal growth rates were calculated for each time interval separately, following the formula described in Orejas et al. (2011) and expressed as %/day.
DOI: 10.15468/dl.6f4pxu
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bothrocophias tulitoi Angarita-Sierra, Cubides-Cubillos & Hurtado-Gómez, 2022"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264961-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qepw6u
title: Occurrence Download

description: A dataset containing 44198 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Halyomorpha halys (Stål, 1855)"
 ]
}

 The dataset includes 44198 records from 182 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048882-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eurfv9
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((89.22942 27.67312,89.63761 28.10173,91.42006 27.93165,91.55773 27.43052,92.01195 27.37378,91.98473 26.93837,92.50603 26.62051,94.46952 26.93119,98.50888 28.00169,97.89093 31.09817,89.58564 31.36769,89.22942 27.67312))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gentiana veitchiorum Hemsl."
 ]
}

 The dataset includes 68 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031615-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynt7bt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Heliodoxa whitelyana",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073158-230530130749713/datasets/export for details.
DOI: 10.15468/dl.gp9z4k
title: Occurrence Download

description: A dataset containing 2128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Elephas maximus Linnaeus, 1758",
 "Year 2002-2022"
 ]
}

 The dataset includes 2128 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264995-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gktd57
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Matelea microphylla Morillo"
 ]
}

 The dataset includes 9 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031619-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7v9zmr
title: Occurrence Download

description: A dataset containing 126059 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Francolinus swainsonii (A.Smith, 1836)"
 ]
}

 The dataset includes 126059 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048916-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r96eb8
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bothrops pulcher (Peters, 1862)"
 ]
}

 The dataset includes 19 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264975-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bu6nh7
title: Occurrence Download

description: A dataset containing 405 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cymbidium floribundum Lindl."
 ]
}

 The dataset includes 405 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018857-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xefd33
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Matelea melinii (Malme) Morillo"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031616-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.