cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8188421
title: A review of 65 years of human adenovirus seroprevalence

description: <b>Introduction</b>: Human adenovirus (HAdV)-derived vectors have been used in numerous pre-clinical and clinical trials during the last 40 years. Current research in HAdV-based vaccines focuses on improving transgene immunogenicity and safety. Because pre-existing humoral immunity against HAdV types correlate with reduced vaccine efficacy and safety, many groups are exploring the development of HAdV types vectors with lower seroprevalence. However, global seroepidemiological data are incomplete. <b>Areas covered</b>: The goal of this review is to centralize 65 years of research on (primarily) HAdV epidemiology. After briefly addressing adenovirus biology, we chronical HAdV seroprevalence studies and highlight major milestones. Finally, we analyze data from about 50 studies with respect to HAdVs types that are currently used in the clinic, or are in the developmental pipeline. <b>Expert opinion</b>: Vaccination is among the most efficient tools to prevent infectious disease. HAdV-based vaccines have undeniable potential, but optimization is needed and antivector immunity remains a challenge if the same vectors are to be administrated to different populations. Here, we identify gaps in our knowledge and the need for updated worldwide epidemiological data.
DOI: 10.6084/m9.figshare.8190245.v1
title: The Result of Molecular Docking

description: The data upload in this repository is the data get from the in silico experiment
DOI: 10.6084/m9.figshare.8190305.v1
title: Additional file 1: of Effect of changes in monitor unit rate and energy on dose rate of total marrow irradiation based on Linac volumetric arc therapy

description: Table S1. Dose-volumetric parameters for each MU rate of TMI by VMAT using 6, 10 and 15 MV. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8190395
title: Additional file 8: of Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice

description: Table S1. Primers used in this manuscript. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8190470.v1
title: Additional file 2: of Automated image-analysis method for the quantification of fiber morphometry and fiber type population in human skeletal muscle

description: Macro script used for the analysis of muscle morphometry. (TXT 10 kb)
DOI: 10.6084/m9.figshare.8190425
title: Additional file 6: of Inhibition of ERK1/2 in cancer-associated pancreatic stellate cells suppresses cancerâ  stromal interaction and metastasis

description: Table S2. Clinicopathological features of PADC samples used for p-ERK1/2 immunohistochemistry. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8190425.v1
title: Additional file 6: of Inhibition of ERK1/2 in cancer-associated pancreatic stellate cells suppresses cancerâ  stromal interaction and metastasis

description: Table S2. Clinicopathological features of PADC samples used for p-ERK1/2 immunohistochemistry. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8190461
title: Additional file 1: of Carbohydrate metabolic systems present on genomic islands are lost and gained in Vibrio parahaemolyticus

description: Table S1. Phenotypic growth analysis of V. parahaemolyticus strains RIMD2210633 and UCM-V493. Table S2. Pathogenic and non-pathogenic strains of V. parahaemolyticus examined in detail in this study. Table S3. Completed genomes of V. parahaemolyticus strains used for whole genome analysis. Table S4. Unique regions (10-kb or &gt;) present in the 16 V. parahaemolyticus strains that are absent in RIMD2210633. Table S5. V. parahaemolyticus strains containing citrate fermentation cluster. Table S6. V. parahaemolyticus strains containing 26-kb (upper panel) and metabolic island (lower panel) with l-rhamnose cluster. Table S7. V. parahaemolyticus strains containing d-galactitol, l-arabinose (with MFS transporter), and l-arabinogalactan utilization clusters. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.8190461.v1
title: Additional file 1: of Carbohydrate metabolic systems present on genomic islands are lost and gained in Vibrio parahaemolyticus

description: Table S1. Phenotypic growth analysis of V. parahaemolyticus strains RIMD2210633 and UCM-V493. Table S2. Pathogenic and non-pathogenic strains of V. parahaemolyticus examined in detail in this study. Table S3. Completed genomes of V. parahaemolyticus strains used for whole genome analysis. Table S4. Unique regions (10-kb or &gt;) present in the 16 V. parahaemolyticus strains that are absent in RIMD2210633. Table S5. V. parahaemolyticus strains containing citrate fermentation cluster. Table S6. V. parahaemolyticus strains containing 26-kb (upper panel) and metabolic island (lower panel) with l-rhamnose cluster. Table S7. V. parahaemolyticus strains containing d-galactitol, l-arabinose (with MFS transporter), and l-arabinogalactan utilization clusters. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.8190470
title: Additional file 2: of Automated image-analysis method for the quantification of fiber morphometry and fiber type population in human skeletal muscle

description: Macro script used for the analysis of muscle morphometry. (TXT 10 kb)
DOI: 10.6084/m9.figshare.8190518
title: Additional file 3: of Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea)

description: Supplementary Tables S1, S2, S3 (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8190395.v1
title: Additional file 8: of Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice

description: Table S1. Primers used in this manuscript. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8190503.v1
title: Additional file 1: of Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea)

description: 100 ancestral sequences sampled from the posterior distribution of Anostraca stem node (FASTA 1394 kb)
DOI: 10.6084/m9.figshare.8190536
title: Additional file 1: of Genomic sequencing of Troides aeacus nucleopolyhedrovirus (TraeNPV) from golden birdwing larvae (Troides aeacus formosanus) to reveal defective Autographa californica NPV genomic features

description: Table S1. Characteristics of current sequenced baculovirus genomes. 1n/a = no information is available in either the paper or GenBank file. 2The GenBank file with accession number KX1513952 is not available at the GenBank website. §Virus name printed in bold were used for further comparison. Table S2. ORFs predicted in the TraeNPV genome. Table S3. ORF numbers of the 37 baculovirus core genes from 77 baculoviruses. Table S4. Sequencing library statistics. Table S5. Primer sets for validating the genome assembly and gap filling. *A total of 103 primer sets were used in this study. The average amplicon size is ca. 1150 bp and the re-sequenced coverage is ca. 1. Table S6. Primer sets for validating the gene coding regions. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.8190503
title: Additional file 1: of Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea)

description: 100 ancestral sequences sampled from the posterior distribution of Anostraca stem node (FASTA 1394 kb)
DOI: 10.6084/m9.figshare.8190512
title: Additional file 2: of Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea)

description: 100 ancestral sequences sampled from the posterior distribution of Phyllopoda stem node (FASTA 1394 kb)
DOI: 10.6084/m9.figshare.8190518.v1
title: Additional file 3: of Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea)

description: Supplementary Tables S1, S2, S3 (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8190575.v1
title: MOESM1 of High infestation of invasive Aedes mosquitoes in used tires along the local transport network of Panama

description: Additional file 1: Table S1. Complete list of used-tire trading garages mapped along the highways of Panama with information on the road density at the recorded geographical location, the species present and the number of individuals recorded through active surveillance (AS) and oviposition traps (OVT). Samples from garages marked with (*) were subjected to analysis with MALDI-TOF-MS.
DOI: 10.6084/m9.figshare.8190578
title: MOESM2 of High infestation of invasive Aedes mosquitoes in used tires along the local transport network of Panama

description: Additional file 2: Table S2. Complete spreadsheet of used-tire trading garages selected for mosquito egg mass spectra generation with their respective SNN model prediction.
DOI: 10.6084/m9.figshare.8190578.v1
title: MOESM2 of High infestation of invasive Aedes mosquitoes in used tires along the local transport network of Panama

description: Additional file 2: Table S2. Complete spreadsheet of used-tire trading garages selected for mosquito egg mass spectra generation with their respective SNN model prediction.
DOI: 10.6084/m9.figshare.8190512.v1
title: Additional file 2: of Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea)

description: 100 ancestral sequences sampled from the posterior distribution of Phyllopoda stem node (FASTA 1394 kb)
DOI: 10.6084/m9.figshare.8190593.v1
title: MOESM4 of High infestation of invasive Aedes mosquitoes in used tires along the local transport network of Panama

description: Additional file 4: Table S3. Results of the Generalised Linear Model. Analysis was performed using a Poisson distribution with a logit link to test whether the presence of only Ae. aegypti, only Ae. albopictus or the co-occurrence of both species was linked to the density of roads. The density of roads was the dependent variable in analyses.
DOI: 10.6084/m9.figshare.8190620
title: Additional file 3: of Clinical utility of custom-designed NGS panel testing in pediatric tumors

description: Table S8. Tier 1â  3 variants detected in all cases with clinical utility scoring. Table S9. Twelve subjects that received a change to diagnosis as a result of genomic testing. (XLSX 352 kb)
DOI: 10.6084/m9.figshare.8190695
title: Additional file 4: of An eukaryotic elongation factor 2 from Medicago falcata (MfEF2) confers cold tolerance

description: Table S2. List of upregulated and downregulated proteins identified and quantified by iTRAQ analysis in transgenic plant versus the wild type (XLS 469â  kb) (XLS 468 kb)
DOI: 10.6084/m9.figshare.8190719
title: Additional file 10: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S8. Predicted conserved domain mutations in protein sequences from the most differentially expressed genes. Genes are restricted to those with the alternate allele in the RIL. Only the top 50 DEGs in each tissue were considered. Only genes with at least one AA mutation in a conserved region are shown. Protein sequences from BTx and Rio were aligned with MUSCLE, using the msa R package from Bioconductor. CDD regions were predicted using the BTx sequences in NCBIâ  s batch web CD-Search tool ( https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi ). Positions refer to the residue position within BTx. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.8190743
title: Additional file 4: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S2. Samples collected for RNA sequencing. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8190536.v1
title: Additional file 1: of Genomic sequencing of Troides aeacus nucleopolyhedrovirus (TraeNPV) from golden birdwing larvae (Troides aeacus formosanus) to reveal defective Autographa californica NPV genomic features

description: Table S1. Characteristics of current sequenced baculovirus genomes. 1n/a = no information is available in either the paper or GenBank file. 2The GenBank file with accession number KX1513952 is not available at the GenBank website. §Virus name printed in bold were used for further comparison. Table S2. ORFs predicted in the TraeNPV genome. Table S3. ORF numbers of the 37 baculovirus core genes from 77 baculoviruses. Table S4. Sequencing library statistics. Table S5. Primer sets for validating the genome assembly and gap filling. *A total of 103 primer sets were used in this study. The average amplicon size is ca. 1150 bp and the re-sequenced coverage is ca. 1. Table S6. Primer sets for validating the gene coding regions. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.8190575
title: MOESM1 of High infestation of invasive Aedes mosquitoes in used tires along the local transport network of Panama

description: Additional file 1: Table S1. Complete list of used-tire trading garages mapped along the highways of Panama with information on the road density at the recorded geographical location, the species present and the number of individuals recorded through active surveillance (AS) and oviposition traps (OVT). Samples from garages marked with (*) were subjected to analysis with MALDI-TOF-MS.
DOI: 10.6084/m9.figshare.8190593
title: MOESM4 of High infestation of invasive Aedes mosquitoes in used tires along the local transport network of Panama

description: Additional file 4: Table S3. Results of the Generalised Linear Model. Analysis was performed using a Poisson distribution with a logit link to test whether the presence of only Ae. aegypti, only Ae. albopictus or the co-occurrence of both species was linked to the density of roads. The density of roads was the dependent variable in analyses.
DOI: 10.6084/m9.figshare.8190674
title: Additional file 2: of An eukaryotic elongation factor 2 from Medicago falcata (MfEF2) confers cold tolerance

description: Table S1. List of the total 2939 proteins identified in this study (XLS 3170â  kb) (XLS 3169 kb)
DOI: 10.6084/m9.figshare.8190674.v1
title: Additional file 2: of An eukaryotic elongation factor 2 from Medicago falcata (MfEF2) confers cold tolerance

description: Table S1. List of the total 2939 proteins identified in this study (XLS 3170â  kb) (XLS 3169 kb)
DOI: 10.6084/m9.figshare.8190740
title: Additional file 3: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S1. Known sucrose-related genes in sorghum and their associated gene IDs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8190746
title: MOESM1 of Comprehensive characterization of immune- and inflammation-associated biomarkers based on multi-omics integration in kidney renal clear cell carcinoma

description: Additional file 1: Table S1. The enrichment GO terms for Cluster 1.
DOI: 10.6084/m9.figshare.8190761
title: MOESM1 of Genomic measures of inbreeding in the Norwegian–Swedish Coldblooded Trotter and their associations with known QTL for reproduction and health traits

description: Additional file 1: Table S1. Threshold settings used to define runs of homozygosity in PLINK and the corresponding average FROH for a sample of raced Norwegian-Swedish Coldblooded trotters born between 1 January 2000 and 31 December 2009.
DOI: 10.6084/m9.figshare.8190764
title: Additional file 8: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S6. Predicted SNP effects for the top 50 Leaf DEGs. Genes correspond to those shown in Fig. 5. Details about columns are the same as described for Additional file 7: Table S5. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8190764.v1
title: Additional file 8: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S6. Predicted SNP effects for the top 50 Leaf DEGs. Genes correspond to those shown in Fig. 5. Details about columns are the same as described for Additional file 7: Table S5. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8190791.v1
title: Additional file 2: of Repeated evolution of asymmetric genitalia and right-sided mating behavior in the Drosophila nannoptera species group

description: Length measurements at the left and right sides of the ventral aedeagus tip of D. acanthoptera, D. nannoptera, D. machalilla and D. bromeliae (CSV 9 kb)
DOI: 10.6084/m9.figshare.8190809
title: Additional file 6: of Repeated evolution of asymmetric genitalia and right-sided mating behavior in the Drosophila nannoptera species group

description: Landmark position measurements, used to calculate angle values for the multi-species mating position analysis, shown in Fig. 3. (CSV 101 kb)
DOI: 10.6084/m9.figshare.8190620.v1
title: Additional file 3: of Clinical utility of custom-designed NGS panel testing in pediatric tumors

description: Table S8. Tier 1â  3 variants detected in all cases with clinical utility scoring. Table S9. Twelve subjects that received a change to diagnosis as a result of genomic testing. (XLSX 352 kb)
DOI: 10.6084/m9.figshare.8190692
title: MOESM2 of Risk factors associated with sustained circulation of six zoonotic arboviruses: a systematic review for selection of surveillance sites in non-endemic areas

description: Additional file 2: Table S1. Ecological risk factors for each virus.
DOI: 10.6084/m9.figshare.8190743.v1
title: Additional file 4: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S2. Samples collected for RNA sequencing. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8190749
title: Additional file 5: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S3. SRA accession numbers and sample information. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8190749.v1
title: Additional file 5: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S3. SRA accession numbers and sample information. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8190755.v1
title: Additional file 6: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S4. Gene IDs and descriptions for the top 50 DEGs with moderate to high impact mutations in each tissue. Only genes with the alternate allele in the RIL are considered. Genes correspond to those shown in Fig. 5. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8190767
title: MOESM2 of Genomic measures of inbreeding in the Norwegian–Swedish Coldblooded Trotter and their associations with known QTL for reproduction and health traits

description: Additional file 2: Table S2. Correlation matrix between FPED and all FROH estimates.
DOI: 10.6084/m9.figshare.8190773.v1
title: MOESM3 of Genomic measures of inbreeding in the Norwegian–Swedish Coldblooded Trotter and their associations with known QTL for reproduction and health traits

description: Additional file 3: Table S3. Results of the paired t-test (P-values) between FPED and all FROH estimates.
DOI: 10.6084/m9.figshare.8190818
title: Additional file 7: of Repeated evolution of asymmetric genitalia and right-sided mating behavior in the Drosophila nannoptera species group

description: Copulation times of couples filmed for the position analysis of D. nannoptera from a frontal perspective, shown in Additional file 1: Figure S8. (CSV 15 kb)
DOI: 10.6084/m9.figshare.8190827.v1
title: Additional file 8: of Repeated evolution of asymmetric genitalia and right-sided mating behavior in the Drosophila nannoptera species group

description: Angle measurements for the position analysis of D. nannoptera from a frontal perspective, shown in Fig. 3. (CSV 41 kb)
DOI: 10.6084/m9.figshare.8190662
title: Additional file 3: of Medicinal plants as therapeutic options for topical treatment in canine dermatology? A systematic review

description: Assessment of skin associated effects of four medicinal plants in 146 final peer-reviewed references. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.8190662.v1
title: Additional file 3: of Medicinal plants as therapeutic options for topical treatment in canine dermatology? A systematic review

description: Assessment of skin associated effects of four medicinal plants in 146 final peer-reviewed references. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.8190692.v1
title: MOESM2 of Risk factors associated with sustained circulation of six zoonotic arboviruses: a systematic review for selection of surveillance sites in non-endemic areas

description: Additional file 2: Table S1. Ecological risk factors for each virus.
DOI: 10.6084/m9.figshare.8190695.v1
title: Additional file 4: of An eukaryotic elongation factor 2 from Medicago falcata (MfEF2) confers cold tolerance

description: Table S2. List of upregulated and downregulated proteins identified and quantified by iTRAQ analysis in transgenic plant versus the wild type (XLS 469â  kb) (XLS 468 kb)
DOI: 10.6084/m9.figshare.8190719.v1
title: Additional file 10: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S8. Predicted conserved domain mutations in protein sequences from the most differentially expressed genes. Genes are restricted to those with the alternate allele in the RIL. Only the top 50 DEGs in each tissue were considered. Only genes with at least one AA mutation in a conserved region are shown. Protein sequences from BTx and Rio were aligned with MUSCLE, using the msa R package from Bioconductor. CDD regions were predicted using the BTx sequences in NCBIâ  s batch web CD-Search tool ( https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi ). Positions refer to the residue position within BTx. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.8190740.v1
title: Additional file 3: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S1. Known sucrose-related genes in sorghum and their associated gene IDs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8190746.v1
title: MOESM1 of Comprehensive characterization of immune- and inflammation-associated biomarkers based on multi-omics integration in kidney renal clear cell carcinoma

description: Additional file 1: Table S1. The enrichment GO terms for Cluster 1.
DOI: 10.6084/m9.figshare.8190755
title: Additional file 6: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S4. Gene IDs and descriptions for the top 50 DEGs with moderate to high impact mutations in each tissue. Only genes with the alternate allele in the RIL are considered. Genes correspond to those shown in Fig. 5. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8190761.v1
title: MOESM1 of Genomic measures of inbreeding in the Norwegian–Swedish Coldblooded Trotter and their associations with known QTL for reproduction and health traits

description: Additional file 1: Table S1. Threshold settings used to define runs of homozygosity in PLINK and the corresponding average FROH for a sample of raced Norwegian-Swedish Coldblooded trotters born between 1 January 2000 and 31 December 2009.
DOI: 10.6084/m9.figshare.8190776
title: Additional file 9: of A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

description: Table S7. Predicted SNP effects for the top 50 Meristem DEGs. Genes correspond to those shown in Fig. 5. Details about columns are the same as described for Additional file 7: Table S5. (XLSX 19 kb)