cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/wm9dg6bnkt
title: Data-set of academic difficulties among students in western Uganda during COVID-19 induced lockdown

description: This academic research explicit the data-set of academic difficulties among different age groups of students studying in various schools, colleges, or Universities during the COVID-19 induced lockdown. The western part of Uganda comprises 26 districts and the survey was conducted in those regions employing a simple random sampling technique. The dataset are descriptive and an aggregate of 405 students participated in this survey. Among that, 253 students are from rural regions, 59 students are from semi-urban regions and 93 students are from urban regions. This survey was started in April 2020 and data were collected till June 2020. A statistical run was made with the aid of SPSS version 20 software to evaluate the significance level (P-Value&lt;0.05) of each question among the localities.
DOI: 10.6084/m9.figshare.7330556.v1
title: Human Convalescent Serum Sample after DENV seroconversion.

description: Human Convalescent Serum Sample collected after DENV seroconversion.
DOI: 10.6084/m9.figshare.28716017.v1
title: Raw qRT-PCR data

description: File containing all qRT-PCR CT data for all experimental groups and genes, including housekeeping genes Rp49 and Rpl19.
DOI: 10.6084/m9.figshare.20889694.v1
title: Trajectories of duplicated simulations.

description: Raw data contain trajectories of duplicated simulations performed on systems of the best four compounds and the standard molecule.
DOI: 10.6084/m9.figshare.27133947.v1
title: The genome annotation of <i>Bellamya purificata</i>

description: The genome annotation of <i>Bellamya purificata</i>
DOI: 10.6084/m9.figshare.28603217.v1
title: Filtered high-quality SNP files for GWAS analysis of <i>Ruditapes philippinarum</i>

description: The filtered single nucleotide polymorphisms (SNPs) were used for genome-wide association studies (GWAS) of <i>Ruditapes philippinarum</i>.
DOI: 10.6084/m9.figshare.28742360.v1
title: Regression_Transactions.csv

description: Transaction data
DOI: 10.6084/m9.figshare.1570957.v1
title: Code for "Neural sequence generation using spatiotemporal patterns of inhibition", PLOS Comp Bio

description: Matlab code used in: Cannon J, Kopell N, Gardner T, Markowitz J Neural sequence generation using spatiotemporal patterns of inhibition. PLOS Computational Biology
DOI: 10.25955/22179796.v2
title: Datasets

description: Datasets used for RE (Relation Extraction) <br> LLL IEPA HPRD50 BioInfer <br> LLL Abstracts E_Coli RegulonDB Abstracts
DOI: 10.6084/m9.figshare.25316365.v1
title: Data, code, and supp video for "A novel apparatus for studying fish cognition in the wild"

description: We introduce a novel cognitive apparatus designed for fish in their natural habitats. Our results show that this new apparatus is effective for assessing learning abilities across different fish species and understanding decision-making dynamics in the context of a learnt skill. This study provides a starting point to test different aspects of fish cognition under natural conditions and can pave the way for examining <i>in-situ</i> cognitive variation between species and populations exposed to different ecological conditions.Here, we provide the raw data used in the study, the code for analyses, and a supplementary video demonstrating how the foraging board and apparatus can be used.
DOI: 10.6084/m9.figshare.25368061.v1
title: Supplement Material for: Genomic signatures of chromosomal instability and osteosarcoma progression detected by high resolution array CGH and interphase FISH

description:  Osteosarcoma (OS) is characterized by an unstable karyotype which typically has a heterogeneous pattern of complex chromosomal abnormalities. High-resolution array comparative genomic hybridization (CGH) in combination with interphase fluorescence in situ hybridization (FISH) analyses provides a complete description of genomic imbalances together with an evaluation of the contribution of cell-to-cell variation to copy number changes. There have been no analyses to date documenting genomic signatures consistent with chromosomal instability mechanisms in OS tumors using array CGH. In this study, we utilized high-resolution array CGH to identify and characterize recurrent signatures of genomic imbalances using ten OS tumors. Comparison between the genomic profiles identified tumor groups with low, intermediate and high levels of genomic imbalance. Bands 6p22→p21, 8q24 and 17p12→ p11.2 were consistently involved in high copy gain or amplification events. Since these three locations have been consistently associated with OS oncogenesis, FISH probes from each cytoband were used to derive an index of cellular heterogeneity for copy number within each region. OS with the highest degree of genomic imbalance also exhibited the most extreme cell-to-cell copy number variation. Significantly, the three OS with the most imbalance and genomic copy number heterogeneity also had the poorest response to preoperative chemotherapy. This genome wide analysis is the first utilizing oligonucleotide array CGH in combination with FISH analysis to derive genomic signatures of chromosomal instability in OS tumors by studying genomic imbalance and intercellular heterogeneity. This comprehensive genomic screening approach provides important insights concerning the mechanisms responsible for generating complex genomes. The resulting phenotypic diversity can generate tumors with a propensity for an aggressive disease course. A better understanding of the underlying mechanisms leading to OS tumor development could result in the identification of prognostic markers and therapeutic targets.
DOI: 10.6084/m9.figshare.1032650.v1
title: High Resolution Figures from Mills et al. 2012 Social Cognitive Affective Neuroscience Article

description: High resolution figures from: Mills, K. L., Lalonde, F., Clasen, L. S., Giedd, J. N., & Blakemore, S.-J. (2012). Developmental changes in the structure of the social brain in late childhood and adolescence. Social Cognitive and Affective Neuroscience.
DOI: 10.6084/m9.figshare.22439254.v3
title: Data Set for the paper "High-Resolution Working Layouts and Time Series for Renewable Energy Generation in Europe: A Data-Driven Approach for Accurate Fore- and Nowcasting"

description: The data in this repository consists of 7 files. This includes a readme file [readme.txt], three zip-files including onshore wind, offshore wind and photovoltaic layouts for each year and network nodes per country [offshore_wind_working_layouts.zip], [onshore_wind_working_layouts.zip], [PV_working_layouts.zip], and three zip-files including onshore wind, offshore wind and photovoltaic generation time series for each country and year [offshore_wind_generation.zip], [onshore_wind_generation.zip], [PV_generation.zip]. Each file can be downloaded separately or collectively by clicking the "Download all"-Button.
DOI: 10.17632/vkf4v7662k
title: Data for: Anaerobic Digestion of Poultry Litter - A Consequential Life Cycle Assessment

description: Dataset for life cycle assessment of anaerobic digestion of poultry litter. Includes life cycle inventory and impact results.
DOI: 10.6084/m9.figshare.14141135.v1
title: Score based on the ratio of gene expression between hypoxic and normoxic conditions（HN-score）

description: Score based on the ratio of gene expression between hypoxic and normoxic conditions（HN-score）
DOI: 10.6084/m9.figshare.19453481.v1
title: Data for Teunissen & Peters 2022. Predator suppression by a toxic invader does not cascade to prey due to predation by alternate predators. Biological Invasions.

description: Datasets used to analyse:1. Abundance of predators and prey after relative to before cane toad arrival.<br>2. Daily purple-crowned fairy-wren nest survival after relative to before cane toad arrival.3. Likelihood of nest predation by different predator types after relative to before cane toad arrival.
DOI: 10.6084/m9.figshare.20462013.v1
title: Supplementary Material for: The More Extensive the Spread through Air Spaces, the Worse the Prognosis Is: Semi-Quantitative Evaluation of Spread through Air Spaces in Pulmonary Adenocarcinomas

description: <b><i>Introduction:</i></b> The extent of spread through air spaces (STAS) is less investigated among patients with lung adenocarcinoma who underwent sublobar resection. Therefore, we aimed to evaluate the extent of STAS semi-quantitatively, to assess its prognostic impact on overall survival (OS) and recurrence-free survival (RFS), and to investigate the reproducibility of this assessment. <b><i>Methods:</i></b> The number of tumour cell clusters and single tumour cells within air spaces was recorded in three different most prominent areas (200x field of view). The extent of STAS was categorized into three groups, and the presence of free tumour cluster (FTC) was recorded. <b><i>Results:</i></b> Sixty-one patients were included. Recurrence was more frequent with higher grade (<i>p</i> = 0.003), presence of lymphovascular invasion (<i>p</i> = 0.027), and presence of STAS of any extent (<i>p</i> = 0.007). In multivariate analysis, presence of FTC (HR: 5.89; 95% CI: 1.63–21.26; <i>p</i> = 0.005) and more pronounced STAS (HR: 7.46; 95% CI: 1.60–34.6; <i>p</i> = 0.01) had adverse impact on OS and RFS, respectively. Concerning reproducibility, excellent agreement was found among STAS parameters (ICC range: 0.92–0.94). <b><i>Discussion:</i></b> More extensive STAS is an unfavourable prognostic factor in adenocarcinomas treated with sublobar resection. As the evaluation of extent of STAS is reproducible, further investigation is required to gather more evidence.
DOI: 10.6084/m9.figshare.16780525.v2
title: A scoping review of new implementations of interprofessional bedside rounding models to improve teamwork, care, and outcomes in hospitals

description: Poor communication within healthcare teams occurs commonly, contributing to inefficiency, medical errors, conflict, and other adverse outcomes. Interprofessional bedside rounds (IBR) are a promising model that brings two or more health professions together with patients and families as part of a consistent, team-based routine to share information and collaboratively arrive at a daily plan of care. The purpose of this systematic scoping review was to investigate the breadth and quality of IBR literature to identify and describe gaps and opportunities for future research. We followed an adapted Arksey and O’Malley Framework and PRISMA scoping review guidelines. PubMed, CINAHL, PsycINFO, and Embase were systematically searched for key IBR words and concepts through June 2020. Seventy-nine articles met inclusion criteria and underwent data abstraction. Study quality was assessed using the Mixed Methods Assessment Tool. Publications in this field have increased since 2014, and the majority of studies reported positive impacts of IBR implementation across an array of team, patient, and care quality/delivery outcomes. Despite the preponderance of positive findings, great heterogeneity, and a reliance on quantitative non-randomized study designs remain in the extant research. A growing number of interventions to improve safety, quality, and care experiences in hospital settings focus on redesigning daily inpatient rounds. Limited information on IBR characteristics and implementation strategies coupled with widespread variation in terminology, study quality, and design create challenges in assessing the effectiveness of models of rounds and optimal implementation strategies. This scoping review highlights the need for additional studies of rounding models, implementation strategies, and outcomes that facilitate comparative research.
DOI: 10.6084/m9.figshare.22952108.v1
title: Supplementary Material for: Urinary copper excretion is associated with long-term graft failure in kidney transplant recipients

description: Introduction In chronic kidney disease, proteinuria increases urinary copper excretion, inducing oxidative tubular damage and worsening kidney function. We investigated whether this phenomenon occurred in kidney transplant recipients (KTR). In addition, we studied the associations of urinary copper excretion with the biomarker of oxidative tubular damage urinary liver-type fatty-acid binding protein (u-LFABP) and death-censored graft failure. Methods This prospective cohort study was performed in the Netherlands between 2008 and 2017, including outpatient KTR with a functioning graft for longer than 1 year, who were extensively phenotyped at baseline. Twenty-four-hour urinary copper excretion was measured by inductively coupled plasma mass spectrometry. Multivariable linear and Cox regression analyses were performed. Results In 693 KTR (57% men, 53 ± 13 years, eGFR 52 ± 20 mL/min/1.73 m2), baseline median urinary copper excretion was 23.6 (interquartile range 11.3–15.9) µg/24-hour. Urinary protein excretion was positively associated with urinary copper excretion (standardized β=0.39, P&lt;0.001), and urinary copper excretion was positively associated with u-LFABP (standardized β=0.29, P&lt;0.001). During a median follow-up of 8 years, 109 (16%) KTR developed graft failure. KTR with relatively high copper excretion were at higher risk of long-term graft failure (HR 1.57, 95% CI 1.32–1.86 per log2, P&lt;0.001), independent of multiple potential confounders like eGFR, urinary protein excretion, and time after transplantation. A dose-response relationship was observed over increasing tertiles of copper excretion (HR 5.03, 95% CI 2.75–9.19, tertile 3 vs 1, P&lt;0.001). u-LFABP was a significant mediator of this association (74% of indirect effect, P&lt;0.001). Conclusion In KTR, urinary protein excretion is positively correlated with urinary copper excretion. In turn, higher urinary copper excretion is associated with an independent increased risk of kidney graft failure, with a substantial mediating effect through oxidative tubular damage. Further studies are warranted to investigate whether copper excretion-targeted interventions could improve kidney graft survival.
DOI: 10.17632/mbvkpmvsgx
title: EFFECTIVENESS OF MULLIGAN TECHNIQUE IN TEXT NECK SYNDROME ON PAIN TOLERANCE IN YOUNGE ADULTS – A QUASI EXPERIMENTAL STUDY.

description: The aim of the study was to evaluate the efficacy of Mulligan Technique to reduce pain tolerance in Text Neck Syndrome in young adults.

The objective of this study has been accomplished with the help of the methods, statical analysis and its interpretation which has been used to conduct this study.
The results of the study gave the valuable recommendation in relation with text neck syndrome patients.
The result from this study is very inspiring and demonstrated the benefits of mulligan technique in reducing pain in text neck syndrome patients. 
My study concluded that the above calculated value is significant value, strictly prove that the mulligan technique was effective in reducing pain tolerance in young adults suffering from Text Neck Syndrome.
DOI: 10.6084/m9.figshare.23271953.v2
title: Annotation files

description: Annotation files for continuous blocks of PtaM147 tandem repeat arrays in the P. tremula x P. alba INRA717-1B4 genome.Annotation files for two top abundant repeat PtaM147 and PtaM156 monomers detected in the P. tremula x P. alba INRA717-1B4 genome by Stringdecomposer.The consensus sequence of PtaM147 is also included
DOI: 10.6084/m9.figshare.27284613.v1
title: Extended Data Table 1-1

description: This file contains an extended data table describing the mechanotransduction model of the Virtual Cochlea, a computational model that simulates cochlear mechanotransduction.
DOI: 10.6084/m9.figshare.7869299.v2
title: Coho Data.zip

description: This contains choice experiment data from the 2019 paper by Lewis, Dundas, Kling, Lew, and Hacker on restoring Oregon Coast Coho salmon
DOI: 10.6084/m9.figshare.26781724.v1
title: 2030 conservation targets for European errestrial mammals using the Favourable Conservation Status concept

description: Conservation targets for European terrestrial mammals
DOI: 10.17632/64yp27r788
title: Raw mass spectrometry data of recombinant human a1B/b3-tubulin

description: Recombinant human a1B/b3-tubulin was purified from High Five insect cells. We run about 5 μg of protein on a 4-20% Tris-Glycine SDS-PAGE gel. The tubulin band is excised, reduced, alkylated, trypsinized, and analyzed by tandem LC-MS/MS.
DOI: 10.6084/m9.figshare.12279917.v1
title: Source Data for Figure 6 of Jimenez et al. Methods 2020

description: Localization files for Figure 6 of:Jimenez, A., Friedl, K., Leterrier, C. (2020). About samples, giving examples: Optimized Single Molecule Localization Microscopy Methods 174(), 100-114. <br>Multicolor STORM and DNA-PAINT images of immunostained COS cells. A. 3-color image obtained by sequential acquisition of actin by STORM (phalloidinAF647, gray in overlay), microtubules (two anti-α-tubulin antibodies, green on overlay) and clathrin-coated pits (anti-clathrin light chain, red on overlay) by DNAPAINT (Atto655 imager). Bottom panels are zoomed images corresponding to the highlighted area on the full image. B. 5-color image obtained in three steps: first DNA-PAINT of actin (phalloidin-Atto488, green in overlay), microtubules (two anti-α-tubulin antibodies, Atto565 imager, magenta on overlay) and mitochondria (anti TOM20, Atto655 imager, red on overlay), then DNA-PAINT of intermediate filaments (anti-vimentin, Cy3B imager, blue on overlay), then DNA-PAINT of clathrin (anti-clathrin light chain, Cy3B imager, cyan on overlay).
DOI: 10.6084/m9.figshare.24241648.v1
title: Supplementary Material for: Effects of Mineralocorticoid Receptor Antagonists for Chronic Kidney Disease: A Systemic Review and Meta-Analysis

description: Introduction: The benefits and harms of different mineralocorticoid receptor antagonists (MRAs) in chronic kidney disease (CKD) are inconsistent. We aimed to summarize the significance of MRAs in treating CKD. Methods: We searched MEDLINE, EMBASE, and the Cochrane databases for trials assessing the effects of MRAs on non–dialysis-dependent CKD populations. Treatment and adverse effects were summarized using meta-analysis. Results: 53 trials with 6 different MRAs involving 22792 participants were included. Compared with the control group, MRAs reduced urinary albumin-to-creatinine ratio (WMD, -90.90 mg/g, 95% CI, -140.17 to -41.64 mg/g), 24-hour urinary protein excretion (WMD, -0.20 g, 95%CI, -0.28 to -0.12 g), eGFR (WMD, -1.99 ml/min/1.73 m2, 95% CI, -3.28 to -0.70 ml/min/1.73 m2), chronic renal failure events (RR, 0.86, 95% CI, 0.79 to 0.93) and cardiovascular events (RR, 0.84, 95% CI, 0.77 to 0.92). MRAs increased the incidence of hyperkalemia (RR, 2.04, 95% CI, 1.73 to 2.40) and hypotension (RR, 1.80, 95% CI, 1.41 to 2.31). MRAs reduced the incidence of peripheral edema (RR, 0.65, 95% CI, 0.56 to 0.75), but not the risk of acute kidney injury (RR, 0.94, 95% CI, 0.79 to 1.13). Nonsteroidal MRAs (RR, 0.66, 95% CI, 0.57 to 0.75) but not steroidal MRAs (RR, 0.20, 95% CI, 0.02 to 1.68) significantly reduced the risk of peripheral edema. Steroidal MRAs (RR, 5.68, 95% CI, 1.26 to 25.67) but not nonsteroidal MRAs (RR, 0.52, 95% CI, 0.22 to 1.22) increased the risk of breast disorders. Conclusions: In the CKD patients, MRAs, particularly in combination with ACEI/ARB, reduced albuminuria/proteinuria, eGFR, and the incidence of chronic renal failure, cardiovascular and peripheral edema events, whereas increased the incidence of hyperkalemia and hypotension, without the augment of acute kidney injury events. Nonsteroidal MRAs was superior in the reduction of more albuminuria with fewer peripheral edema events, and without the augment of breast disorders events.
DOI: 10.6084/m9.figshare.3750675.v2
title: Data from Environment-dependent plasticity and ontogenetic changes in the brain of hatchery-reared Atlantic salmon (Näslund et al.)

description: This dataset contains data used for the article:<br>Näslund, Larsen, Thomassen, Aarestrup & JohnssonEnvironment-dependent plasticity and ontogenetic changes in the brain of hatchery-reared Atlantic salmonJournal of Zoology, doi:10.1111/jzo.12392
DOI: 10.17632/3982j75df7
title: Promotion of Cholangiocarcinoma Growth by Diverse Cancer-associated Fibroblast Subpopulations

description: Raw data for western blots and phosphoarrays in figure 7 and supplementary figure 7 of our study: Affo et al. "Promotion of Cholangiocarcinoma Growth by Diverse Cancer-associated Fibroblast Subpopulations". Cancer Cell, 2021.
DOI: 10.17632/syxd4b7443
title: Accessing various means for Classroom Engagement to justify the need of Gamification

description: This data set consists of records of survey conducted for identifying the need for gamification in comparison to our present education system. Gamification is a vast concept of changing the non-gaming environment into a gaming environment and now it's time to bring change to our present Indian education system.
DOI: 10.6084/m9.figshare.11919975.v1
title: Table S1 from The Flexiscope: a low cost, flexible, convertible and modular microscope with automated scanning and micromanipulation

description: With technologies rapidly evolving, many research institutions are now opting to invest in costly, high-quality, specialized microscopes which are shared by many researchers. As a consequence, the user may not have the ability to adapt a microscope to their specific needs and limitations in experimental design are introduced. A flexible work-horse microscopy system is a valuable tool in any laboratory to meet the diverse needs of a research team and promote innovation in experimental design. We have developed the Flexiscope; a multi-functional, adaptable, efficient and high-performance microscopy/electrophysiology system for everyday applications in a neurobiology laboratory. The core optical components are relatively constant in the three configurations described here: an upright configuration, an inverted configuration and an upright/electrophysiology configuration. We have provided a comprehensive description of the Flexiscope. We show that this method is capable of oblique infrared illumination imaging, multi-channel fluorescent imaging and automated three-dimensional scanning of larger specimens. Image quality is conserved across the three configurations of the microscope, and conversion between configurations is possible quickly and easily, while the motion control system can be repurposed to allow sub-micrometre computer-controlled micromanipulation. The Flexiscope provides similar performance and usability to commercially available systems. However, as it can be easily reconfigured for multiple roles, it can remove the need to purchase multiple microscopes, giving significant cost savings. The modular reconfigurable nature allows the user to customize the system to their specific needs and adapt/upgrade the system as challenges arise, without requiring specialized technical skills.
DOI: 10.17632/9r67kdx4mv
title: Huang et al. Supplementary data

description: Supplementary material for the manuscript "Enhanced activation of mTORC1 signaling in eruptive xanthomas"  by Huang et al. 2023, JAAD International.