cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.823766
title: Identification And Analysis Of Functional Associations Among Natural Eukaryotic Genome Editing Components

description: The contents of the data files for the manuscript "Identification and analysis of functional associations among natural eukaryotic genome editing components" are described below.

Dataset 1 - ies_retention.tab<br>
= All IES retention scores used in the manuscript

Dataset 2 - oes_retention.tab<br>
= OES retention estimates.

Supplementary Data S1 - ies_retention_score_correlation_stats_all.txt<br>
= Statistics for Spearman's correlations for all IESs.

Supplementary Data S2 - ies_retention_score_correlation_stats_len_le_35bp.txt<br>
= Statistics for Spearman's correlations for IESs &lt;= 35 bp.

Supplementary Data S3 - ies_retention_score_correlation_stats_len_ge_500bp.txt<br>
= Statistics for Spearman's correlations for IESs &gt;= 500 bp.

Supplementary Data S4 - oes_retention_score_correlation_stats_all.txt<br>
= Statistics for Spearman's correlations for OESs (&gt;= 300 bp and 3x-70x PGM-KD<br>
coverage).

Supplementary Data S5 - ies_retention_score_correlation.comparison_stats.txt<br>
= Statistics for comparisons of Spearman correlation differences for all IESs.

Supplementary Data S6 - oes_retention_score_correlation.comparison_stats.txt<br>
= Statistics for comparisons of Spearman correlation differences for all OESs.

Supplementary Data S7 - ies_vs_oes_retention_score_correlation.comparisons_stats.txt<br>
= Statistics for comparisons of the differences in Spearman correlations<br>
between IESs and OESs.

Supplementary Data S8 - OES.v1.fa<br>
= OES sequences.
DOI: 10.14457/su.res.2016.34
title: การศึกษาแนวทางส่งเสริมการทำงานเพื่อสร้างความสุขของผู้สูงอายุในอาเซียน
DOI: 10.14457/su.res.2016.35
title: การศึกษาแนวทางส่งเสริมวัฒนธรรมเพื่อสร้างความสุขของผู้สูงอายุในอาเซียน
DOI: 10.14457/su.res.2016.36
title: การศึกษาแนวทางส่งเสริมการสร้างความสุขของผู้สูงอายุในอาเซียน
DOI: 10.14457/sut.res.2015.83
title: การร่างแผนแม่บทสำหรับลดผลกระทบการทรุดตัวของผิวดินจากการทำเหมืองเกลือหินใต้ดิน
DOI: 10.14457/sut.res.2016.16
title: ดัชนีชี้วัดปริมาณน้ำท่าเพื่อการบริหารจัดการน้ำสำหรับลุ่มน้ำมูล
DOI: 10.5281/zenodo.823772
title: Global Oceans Self-Consistent Spatial Discretization Mesh

description: Global oceans<br>
=============

An unstructured mesh spatial discretisation of the global oceans.

This is stored in an unstructured VTU file defined by the visualisation toolkit VTK [2].

A state PVSM file for Paraview [3] is also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU file in this state file.

Files<br>
-----

GlobalOceans.vtu<br>
GlobalOceans.pvsm

Author<br>
------

Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;

Technische Universiteit Delft<br>
Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.

[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.

[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.5281/zenodo.823773
title: Global Oceans Self-Consistent Spatial Discretization Mesh

description: Global oceans<br>
=============

An unstructured mesh spatial discretisation of the global oceans.

This is stored in an unstructured VTU file defined by the visualisation toolkit VTK [2].

A state PVSM file for Paraview [3] is also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU file in this state file.

Files<br>
-----

GlobalOceans.vtu<br>
GlobalOceans.pvsm

Author<br>
------

Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;

Technische Universiteit Delft<br>
Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.

[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.

[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.5281/zenodo.823774
title: Berriasian Oceans Self-Consistent Spatial Discretization Mesh

description: Berriasian oceans<br>
=================

An unstructured mesh spatial discretisation of the global oceans of the Early Cretaceous Berriasian age.

This is stored in an unstructured VTU file defined by the visualisation toolkit VTK [2].

A state PVSM file for Paraview [3] is also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU file in this state file.

Files<br>
-----

BerriasianOceans.vtu<br>
BerriasianOceans.pvsm

Author<br>
------

Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;

Technische Universiteit Delft<br>
Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.

[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.

[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.5281/zenodo.823775
title: Berriasian Oceans Self-Consistent Spatial Discretization Mesh

description: Berriasian oceans<br>
=================

An unstructured mesh spatial discretisation of the global oceans of the Early Cretaceous Berriasian age.

This is stored in an unstructured VTU file defined by the visualisation toolkit VTK [2].

A state PVSM file for Paraview [3] is also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU file in this state file.

Files<br>
-----

BerriasianOceans.vtu<br>
BerriasianOceans.pvsm

Author<br>
------

Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;

Technische Universiteit Delft<br>
Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.

[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.

[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.5281/zenodo.823777
title: Global Oceans Self-Consistent Spatial Discretization Mesh

description: Global oceans<br>
=============

An unstructured mesh spatial discretisation of the global oceans.

This is stored in an unstructured VTU file defined by the visualisation toolkit VTK [2].

A state PVSM file for Paraview [3] is also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU file in this state file.

Files<br>
-----

- GlobalOceans.vtu<br>
- GlobalOceans.pvsm

Author<br>
------

- Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;<br>
- Technische Universiteit Delft<br>
- Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.<br>
[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.<br>
[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.5281/zenodo.824191
title: Ground Truth Dataset With Mappings Of Companies To Opencorporates Legal Entities

description: Ground Truth Dataset with mappings of companies to OpenCorporates legal entities. Available data per company: company name, country of headquarters, state of headquarters (in case of US companies) and address of headquarters.
DOI: 10.5281/zenodo.824192
title: Ground Truth Dataset With Mappings Of Companies To Opencorporates Legal Entities

description: Ground Truth Dataset with mappings of companies to OpenCorporates legal entities. Available data per company: company name, country of headquarters, state of headquarters (in case of US companies) and address of headquarters.
DOI: 10.14457/tu.the.2009.767
title: ความสามารถในการดูดซับฟอสฟอรัสของดินนาข้าวอินทรีย์
DOI: 10.5281/zenodo.823779
title: Southern Ocean And Antarctic Floating Ice Sheets Self-Consistent Spatial Discretization Mesh

description: Southern Ocean and Antarctic floating ice sheets<br>
================================================

An unstructured mesh spatial discretisation of the Southern Ocean and floating ice sheets of Antarctica.

This is stored in two unstructured VTU files defined by the visualisation toolkit VTK [2].

Five state PVSM file for Paraview [3] are also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU files in this state file.

Files<br>
-----

- AntarcticaSouthernOcean.vtu<br>
- AntarcticaSouthernOcean_ice.vtu<br>
- AntarcticaSouthernOcean.pvsm<br>
- AntarcticaSouthernOcean_below.pvsm<br>
- AntarcticaSouthernOcean_Ross_FilchnerRonne_cutaway.pvsm<br>
- AntarcticaSouthernOcean_Ross_FilchnerRonne_cross_section.pvsm<br>
- AntarcticaSouthernOcean_depth_below.pvsm

Author<br>
------

- Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;<br>
- Technische Universiteit Delft<br>
- Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.

[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.

[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.5281/zenodo.823780
title: Southern Ocean And Antarctic Floating Ice Sheets Self-Consistent Spatial Discretization Mesh

description: Southern Ocean and Antarctic floating ice sheets<br>
================================================

An unstructured mesh spatial discretisation of the Southern Ocean and floating ice sheets of Antarctica.

This is stored in two unstructured VTU files defined by the visualisation toolkit VTK [2].

Five state PVSM file for Paraview [3] are also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU files in this state file.

Files<br>
-----

- AntarcticaSouthernOcean.vtu<br>
- AntarcticaSouthernOcean_ice.vtu<br>
- AntarcticaSouthernOcean.pvsm<br>
- AntarcticaSouthernOcean_below.pvsm<br>
- AntarcticaSouthernOcean_Ross_FilchnerRonne_cutaway.pvsm<br>
- AntarcticaSouthernOcean_Ross_FilchnerRonne_cross_section.pvsm<br>
- AntarcticaSouthernOcean_depth_below.pvsm

Author<br>
------

- Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;<br>
- Technische Universiteit Delft<br>
- Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.

[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.

[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.5281/zenodo.823781
title: Filchner-Ronne Ice Shelf Ocean Cavity Self-Consistent Spatial Discretization Mesh

description: Filchner-Ronne ice shelf ocean cavity<br>
=====================================

An unstructured mesh spatial discretisation of the Filchner-Ronne ice shelf ocean cavity and the ice sheet floating above.

This is stored in two unstructured VTU files defined by the visualisation toolkit VTK [2].

A state PVSM file for Paraview [3] is also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU files in this state file.

Files<br>
-----

- FilchnerRonneIceShelfOceanCavity.vtu<br>
- FilchnerRonneIceShelfOceanCavity_ice.vtu<br>
- FilchnerRonneIceShelfOceanCavity.pvsm

Author<br>
------

- Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;<br>
- Technische Universiteit Delft<br>
- Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.

[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.

[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.5281/zenodo.823782
title: Filchner-Ronne Ice Shelf Ocean Cavity Self-Consistent Spatial Discretization Mesh

description: Filchner-Ronne ice shelf ocean cavity<br>
=====================================

An unstructured mesh spatial discretisation of the Filchner-Ronne ice shelf ocean cavity and the ice sheet floating above.

This is stored in two unstructured VTU files defined by the visualisation toolkit VTK [2].

A state PVSM file for Paraview [3] is also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU files in this state file.

Files<br>
-----

- FilchnerRonneIceShelfOceanCavity.vtu<br>
- FilchnerRonneIceShelfOceanCavity_ice.vtu<br>
- FilchnerRonneIceShelfOceanCavity.pvsm

Author<br>
------

- Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;<br>
- Technische Universiteit Delft<br>
- Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.

[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.

[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.5281/zenodo.823786
title: Pine Island Glacier Ice Shelf Ocean Cavity Self-Consistent Spatial Discretization Mesh

description: Pine Island Glacier ice shelf ocean cavity<br>
==========================================

An unstructured mesh spatial discretisation of the Pine Island Glacier ice shelf ocean cavity.

This is stored in an unstructured VTU file defined by the visualisation toolkit VTK [2].

A state PVSM file for Paraview [3] is also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU file in this state file.

Files<br>
-----

- PineIslandGlacierIceShelfOceanCavity.vtu<br>
- PineIslandGlacierIceShelfOceanCavity_grid_quality_analysis.pvsm

Author<br>
------

- Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;<br>
- Technische Universiteit Delft<br>
- Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.

[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.

[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.5281/zenodo.823784
title: Greenland Ice Sheet Self-Consistent Spatial Discretization Mesh

description: Greenland ice sheet<br>
===================

Two unstructured mesh spatial discretisations of the Greenland ice sheet, with minimum element sizes of 5km and 1km.

These are stored in unstructured VTU files defined by the visualisation toolkit VTK [2].

Two associated state PVSM files for Paraview [3] are also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU files in these state files.

Files<br>
-----

- GreenlandIcesheet1km.vtu<br>
- GreenlandIcesheet5km.vtu<br>
- GreenlandIcesheet1km.pvsm<br>
- GreenlandIcesheet5km.pvsm

Author<br>
------

- Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;<br>
- Technische Universiteit Delft<br>
- Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.

[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.

[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.5281/zenodo.823785
title: Pine Island Glacier Ice Shelf Ocean Cavity Self-Consistent Spatial Discretization Mesh

description: Pine Island Glacier ice shelf ocean cavity<br>
==========================================

An unstructured mesh spatial discretisation of the Pine Island Glacier ice shelf ocean cavity.

This is stored in an unstructured VTU file defined by the visualisation toolkit VTK [2].

A state PVSM file for Paraview [3] is also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU file in this state file.

Files<br>
-----

- PineIslandGlacierIceShelfOceanCavity.vtu<br>
- PineIslandGlacierIceShelfOceanCavity_grid_quality_analysis.pvsm

Author<br>
------

- Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;<br>
- Technische Universiteit Delft<br>
- Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.

[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.

[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.5281/zenodo.823783
title: Greenland Ice Sheet Self-Consistent Spatial Discretization Mesh

description: Greenland ice sheet<br>
===================

Two unstructured mesh spatial discretisations of the Greenland ice sheet, with minimum element sizes of 5km and 1km.

These are stored in unstructured VTU files defined by the visualisation toolkit VTK [2].

Two associated state PVSM files for Paraview [3] are also provided to reproduce visualisations shown in [1].  Note that Paraview requires absolute pathnames, so it may be necessary to edit file references to the VTU files in these state files.

Files<br>
-----

- GreenlandIcesheet1km.vtu<br>
- GreenlandIcesheet5km.vtu<br>
- GreenlandIcesheet1km.pvsm<br>
- GreenlandIcesheet5km.pvsm

Author<br>
------

- Dr Adam S. Candy      &lt;a.s.candy@tudelft.nl&gt;, &lt;candy@cantab.net&gt;<br>
- Technische Universiteit Delft<br>
- Imperial College London

References<br>
----------

[1] Candy, A.S., 2016. A consistent approach to unstructured mesh generation for geophysical models. In review. Preprint available at https://arxiv.org/abs/1703.08491.

[2] The Visualization Toolkit (VTK), version 5.10.1. URL: http://www.vtk.org.

[3] Paraview, version 4.3.1. https://www.paraview.org.
DOI: 10.14457/kmutnb.the.2003.76
title: การตรวจสอบสภาพเครื่องจักรจากการวิเคราะห์การสั่นสะเทือนโดยวิธีการแปลงฮิลเบิร์ท /
DOI: 10.14457/kmutnb.the.2003.77
title: การสร้างและหาประสิทธิภาพบทเรียนคอมพิวเตอร์ช่วยสอนระบบมัลติมีเดีย เรื่องภาพสามมิติ วิชา การเขียนภาพฉาย ระดับประกาศนียบัตรวิชาชีพ วิทยาลัยอาชีวศึกษาธนบุรี /
DOI: 10.14457/kmutnb.the.2003.78
title: การจำลองแบบทางคณิตศาสตร์ ของเครื่องแลกเปลี่ยนความร้อนแบบเปลือกและท่อ สำหรับท่อของเหลวและท่อดูด /
DOI: 10.5281/zenodo.823767
title: Raptr: Representative And Adequate Prioritization Toolkit In R

description: 1. An underlying aim in conservation planning is to maximize the long-term persistence of biodiversity. To fulfill this aim, the ecological and evolutionary processes that sustain biodiversity must be preserved. One way to conserve such processes at the feature level (eg. species, ecosystem) is to preserve a sample of the feature (eg. individuals, areas) that is representative of the intrinsic or extrinsic physical attributes that underpin the process of interest. For example, by conserving a sample of populations with local adaptations---physical attributes associated with adaptation---that is representative of the range of adaptations found in the species, protected areas can maintain adaptive processes by ensuring these adaptations are not lost. Despite this, current reserve selection methods overwhelmingly focus on securing an adequate amount of area or habitat for each feature. Little attention has been directed towards capturing a representative sample of the variation within each feature.

2. To address this issue, we developed the <em>raptr R</em> package to help guide reserve selection. Users set "amount targets"---similar to conventional methods---to ensure that solutions secure a sufficient proportion of area or habitat for each feature. Additionally, users set "space targets" to secure a representative sample of variation in ecologically or evolutionarily relevant attributes (eg. environmental or genetic variation). We demonstrate the functionality of this package using simulations and two case studies. In these studies, we generated solutions using amount targets---similar to conventional methods---and compared them with solutions generated using amount and space targets.

3. Our results demonstrate that markedly different solutions emerge when targeting a representative sample of each feature. We show that using these targets is important for features that have multimodal distributions in the process-related attributes (eg. species with multimodal niches). We also found that solutions could conserve a far more representative sample with only a slight increase in reserve system size.

4. The <em>raptr R</em> package provides a toolkit for making prioritizations that secure an adequate and representative sample of variation within each feature. By using solutions that secure a representative sample of each feature, prioritizations may have a greater chance of achieving long-term biodiversity persistence.<br>