cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/s71-jhj-752
title: Ortmanniana ligamentina (Lamarck, 1819)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1z1-he0-ld6
title: Conus miles Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/29t-nsk-bx4
title: Apoma agnesianum (C. B. Adams, 1849)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dag-6x9-lew
title: Cerion marmoratum (L. Pfeiffer, 1847)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/51m-8w3-jl7
title: Spondylus squamosus Schreibers, 1793

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rx2-36a-ash
title: Xerosecta cespitum (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r9t-jet-lks
title: Ostrea angelica Rochebrune, 1895

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wnl-32t-p4n
title: Anixa magistra (L. Pfeiffer, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z5b-sy4-vkx
title: Conus mozambicus Hwass, 1792

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/69v-a1p-prk
title: Vitrinobrachium tridentinum Forcart, 1956

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eaf-9tk-kh8
title: Isognomostoma isognomostomos (Schröter, 1784)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ham-5sh-vmn
title: Argonauta hians [Lightfoot], 1786

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/khl-141-4b0
title: Bradybaena H. Beck, 1837

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t5h-be4-v5a
title: Helicostyla A. Férussac, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b9e-ygt-rlc
title: Mediterranea hydatina (Rossmässler, 1838)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p9f-cjd-9de
title: Unionidae Rafinesque, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9n8-5gh-nf2
title: Rabdotus dealbatus (Say, 1821)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k54-09w-del
title: Mesembrinus elongatus (Röding, 1789)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xnm-xzx-g4f
title: Divaricella ornatissima (A. d'Orbigny, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q59-gd7-93c
title: Argopecten nucleus (Born, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/enp-tqh-7ds
title: Vallonia costata (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fws-r48-lbv
title: Eobania vermiculata (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mj7-fem-8km
title: Causa holosericea (S. Studer, 1820)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fyn-jy2-pl0
title: Glycymerididae Dall, 1908 (1847)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hdv-0d1-y13
title: Striarca lactea (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e4s-015-mch
title: Lampanella minima (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5lz-8zz-3ke
title: Nucula nitidosa Winckworth, 1930

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q35-zvy-qtr
title: Euomphalia strigella (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/frp-9q0-e2b
title: Trochoidea trochoides (Poiret, 1789)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pfx-ww0-98d
title: Mimachlamys sanguinea (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/27h-1js-5th
title: Caracollina lenticula (Michaud, 1831)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bt2-1fd-q6h
title: Helicostyla bullula (Broderip, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m4d-d5c-mqr
title: Oxychilus draparnaudi (H. Beck, 1837)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29916908.v1
title: <b>Symptomology of Long COVID Associated with inherited and acquired thrombophilic conditions: A Systematic Review-- Data Extraction</b>

description: Thrombophilic conditions, conditions where the blood has an increased tendency to form thrombi due to abnormal or dysregulated coagulatory processes, can often affect the trajectory of diseases, such as Long COVID, by increasing risks, worsening symptoms, and complicating outlooks. Previous research on COVID-19 and Long COVID has shown these diseases’ abilities to induce pro-coagulatory states, which is a common hypothesis of the main mechanisms of their pathologies. Given that thrombophilic conditions already create a hypercoagulable environment, it is likely that patients with these conditions may be particularly susceptible to developing COVID-19 and Long COVID, and that they may experience worse symptoms than their peers, due to this elevated level of hypercoagulation. A review of previously published papers through the publicly accessible PubMed database was conducted over a 15-week period to investigate the severity, mechanisms, and symptom profiles of thrombophilic patients with Long COVID. Results showed that Long COVID could be predicted following COVID-19 illness by a hypercoagulable blood profile, indicating that Long COVID may be linked to chronic hypercoagulation and inflammation post SARS-CoV-2 infection. Additionally, specific symptoms linked to microthrombi formation, such as hair loss, arrhythmia, and dizziness, were exhibited more frequently in patients with thrombophilia and/ or thrombophilic conditions, indicating that those with thrombophilic conditions may have specific symptom profiles and risks with Long COVID compared to healthy controls. Further research into Long COVID and its interactions with co-morbidities like thrombophilic conditions helps foster a better understanding of treatment plans for patients, such as the usage of anticoagulants or screening for hypercoagulable blood profiles post-COVID-19 to assess patient risk.
DOI: 10.3535/tht-s95-kgn
title: Mesodon zaletus (A. Binney, 1837)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z11-yzd-erf
title: Xesta citrina (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29916908
title: <b>Symptomology of Long COVID Associated with inherited and acquired thrombophilic conditions: A Systematic Review-- Data Extraction</b>

description: Thrombophilic conditions, conditions where the blood has an increased tendency to form thrombi due to abnormal or dysregulated coagulatory processes, can often affect the trajectory of diseases, such as Long COVID, by increasing risks, worsening symptoms, and complicating outlooks. Previous research on COVID-19 and Long COVID has shown these diseases’ abilities to induce pro-coagulatory states, which is a common hypothesis of the main mechanisms of their pathologies. Given that thrombophilic conditions already create a hypercoagulable environment, it is likely that patients with these conditions may be particularly susceptible to developing COVID-19 and Long COVID, and that they may experience worse symptoms than their peers, due to this elevated level of hypercoagulation. A review of previously published papers through the publicly accessible PubMed database was conducted over a 15-week period to investigate the severity, mechanisms, and symptom profiles of thrombophilic patients with Long COVID. Results showed that Long COVID could be predicted following COVID-19 illness by a hypercoagulable blood profile, indicating that Long COVID may be linked to chronic hypercoagulation and inflammation post SARS-CoV-2 infection. Additionally, specific symptoms linked to microthrombi formation, such as hair loss, arrhythmia, and dizziness, were exhibited more frequently in patients with thrombophilia and/ or thrombophilic conditions, indicating that those with thrombophilic conditions may have specific symptom profiles and risks with Long COVID compared to healthy controls. Further research into Long COVID and its interactions with co-morbidities like thrombophilic conditions helps foster a better understanding of treatment plans for patients, such as the usage of anticoagulants or screening for hypercoagulable blood profiles post-COVID-19 to assess patient risk.
DOI: 10.3535/l8r-pz3-nz9
title: Barbatia trapezina (Lamarck, 1819)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0ds-kt3-jvw
title: Pseudodontopsis euphratica (Bourguignat, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3cv-9vd-d1s
title: Oxyloma elegans (Risso, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cav-y7a-jxx
title: Conus diadema G. B. Sowerby I, 1834

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cer-ec8-n5r
title: Retinella incerta (Draparnaud, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/76p-c2w-523
title: Orbitestella bermudezi (Aguayo & Borro, 1946)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jg0-6f8-swq
title: Helicigona lapicida (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nm7-17m-cd0
title: Helicigona lapicida (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ns3-mxk-bwn
title: Rumina saharica Pallary, 1901

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/db9-3g5-ts9
title: Iberus splendidus (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rms-yl8-29c
title: Ctena decussata (O. G. Costa, 1829)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qva-x0z-f2y
title: Cerithium lutosum Menke, 1828

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4j3-e7l-b1v
title: Barbatia pistachia (Lamarck, 1819)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9rt-402-4fc
title: Striarca lactea (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m76-3sl-wle
title: Barbatia amygdalumtostum (Röding, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p1q-0jz-g0d
title: Anodonta anatina (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e3t-xdj-440
title: Epiphragmophora estella (A. d'Orbigny, 1835)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/txq-x3p-5xb
title: Acar plicata (Dillwyn, 1817)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/29g-kkt-vc2
title: Cepaea nemoralis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c08-cd3-h8g
title: Cavilinga lampra (Dall, 1901)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lyt-yvm-3re
title: Discus whitneyi (Newcomb, 1864)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/04t-m5d-lhl
title: Chrysallis aspersa (Grateloup, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2bl-nlq-7a7
title: Theba pisana (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.4k5atm
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.6.4_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Muntiacus vaginalis"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007660-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/6tf-ks7-397
title: Septifer bilocularis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b78-qln-vza
title: Aegopinella nitidula (Draparnaud, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sdy-bzk-4x9
title: Elongaria orientalis (I. Lea, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sva-k78-r7z
title: Canefriula Iredale, 1941

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c0r-fk8-7wj
title: Plekocheilus pulicarius (Reeve, 1848)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aes-pcr-cjt
title: Spondylus gaederopus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bme-wrx-b11
title: Videna niasensis (Fulton, 1907)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6kw-5f0-pjs
title: Cochlicella acuta (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jsp-ve7-fxh
title: Chiliborus chilensis (G. B. Sowerby I, 1833)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f3j-fdg-hm1
title: Cerion Röding, 1798

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zgk-hhj-2wz
title: Xerolenta obvia (Menke, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hnr-1wl-prb
title: Conus generalis Linnaeus, 1767

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yvf-rtb-jvp
title: Eobania vermiculata (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/prb-0n1-mvc
title: Eoacmaea pustulata (Helbling, 1779)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2vd-01s-tdc
title: Conus emaciatus Reeve, 1849

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cqv-75x-pkt
title: Helicidae Rafinesque, 1815

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5d4-897-zmf
title: Nesiohelix Kuroda & Emura, 1943

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9hm-8b9-bl0
title: Conus canonicus Hwass, 1792

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.r3kwpc
title: Occurrence Download

description: A dataset containing 3042734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Larus canus"
 ]
}

 The dataset includes 3042734 records from 1119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007616-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/q1p-4s2-mgp
title: Cyrnotheba Germain, 1928

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tlp-d44-5ew
title: Anadara uropigimelana (Bory de Saint-Vincent, 1827)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ep8-fap-sf3
title: Conus capitaneus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/77v-s82-twp
title: Cornu aspersum (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/slj-5vx-zb2
title: Helicidae Rafinesque, 1815

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16879214
title: Supporting Experimental Data for Manuscript "Non-Hermitian Floquet Topological Sensors for Ultra-Sensitive Detection of Dynamic Signals"

description: Supporting Experimental Data for Manuscript “Non-Hermitian Floquet Topological Sensors for Ultra-Sensitive Detection of Dynamic Signals”, for Figure 3 and Figure 4.
DOI: 10.5281/zenodo.16879215
title: Supporting Experimental Data for Manuscript "Non-Hermitian Floquet Topological Sensors for Ultra-Sensitive Detection of Dynamic Signals"

description: Supporting Experimental Data for Manuscript “Non-Hermitian Floquet Topological Sensors for Ultra-Sensitive Detection of Dynamic Signals”, for Figure 3 and Figure 4.
DOI: 10.15468/dl.mwqgdw
title: Occurrence Download

description: A dataset containing 8061 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hydrangea arborescens)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8061 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007659-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1de-9mv-dqh
title: Sulcobasis beatricis (Tapparone Canefri, 1883)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/34z-2b7-yvv
title: Pinctada sugillata (Reeve, 1857)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3wf-qkf-dmx
title: Amphidromus perversus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s0m-pcm-7cf
title: Microcystina Mörch, 1872

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/scm-1mp-e6y
title: Toxolasma parvum (Barnes, 1823)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a1d-ren-z1c
title: Helix Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q20-0zm-4m4
title: Leptaxis simia simia (A. Férussac, 1832)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1mw-dc0-0s7
title: Lamarcka imbricata (Bruguière, 1789)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vnv-6ea-zcr
title: Gonyodiscus rotundatus (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1wv-wrb-3kq
title: Cepaea nemoralis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a4v-rd3-bv5
title: Chloraea Albers, 1850

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zlk-yqq-9sd
title: Codakia orbicularis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4x2-49x-k78
title: Saccella acrita (Dall, 1908)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d7f-0c4-6gk
title: Conus coronatus Gmelin, 1791

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9xa-4gq-4k2
title: Truncilla truncata Rafinesque, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j60-9hj-8m4
title: Isognomon perna (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l0h-tly-hlp
title: Barbatia trapezina (Lamarck, 1819)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.11092490
title: Healthy and cancer individuals from Long-read sequencing reveals aberrant fragmentation patterns and origins of circulating DNA in cancer

description: Oxford Nanopore sequencing data from 61 samples described in manuscript "Long-read sequencing reveals aberrant fragmentation patterns and origins of circulating DNA in cancer"

All data are aligned to UCSC analysisSet hg38 (https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/analysisSet/), and use 0-based coordinates.

Level 2: In order to provide combined fragmentation and methylation information, Biscuit was used to create “epiBED” files (see Methods). epiBED files contain each read on a separate line, with each DNA methylation call on the read. epiBED files can be used for combined methylation/fragmentomic analysis, and are compatible with the CelFiE-ISH software that was used for cell of origin deconvolution.

Creation of Biscuit EpiBED files:Biscuit (https://huishenlab.github.io/biscuit/) v. 1.4.1-dev  was used with the command “biscuit epiread -M -b 0 -m 0 -a 0 -5 0 -3 0 -y 0.9 -L 1000000 hg38.analysisSet.fa”, where the reference is the same UCSC reference genome used for alignment. Files are available in the Zenodo repository listed in Data Availability.

Level 3: DNA methylation BED files. BED files created by modkit (see Methods) provide one line for each CpG covered, and can be used for basic DNA methylation analysis.Creation of modkit BED files:BED files were created using modkit (https://github.com/nanoporetech/modkit) v. 0.1.5 with the command “modkit pileup --cpg --combine-strands --ignore h --filter-threshold 0.9 --bedgraph".