cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26008/1912/bco-dmo.884544.1
title: Coral physiology parameters acquired during a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i.

description: Two common reef-building corals, Montipora capitata and Pocillopora acuta, were collected from six sites in Kāne'ohe Bay, O'ahu, Hawai'i. Fragments were allowed to acclimate in experimental tanks for two weeks prior to exposure to one of the following four treatments: Ambient Temperature Ambient pCO2 (ATAC), Ambient Temperature High pCO2 (ATHC), High Temperature Ambient pCO2 (HTAC), and High Temperature High pCO2 (HTHC). The treatment period lasted for a two month period, starting on September 22nd, 2018 and lasting through November 17th, 2018. Following the stress period, coral fragments were exposed to a two-month recovery period in ambient conditions. 

Throughout the entire four-month experiment, fragments were randomly sampled from each tank and treatment for the following physiology parameters: gross photosynthesis, respiration, net photosynthesis (gross photosynthesis - respiration), photosynthesis:respiration ratio, chlorophyll concentration (pigment a and c2), symbiont and host tissue biomass,  symbiont:host tissue biomass ratio, host soluble protein, host total antioxidant capacity, and endosymbiont density. Net photosynthesis, chlorophyll concentration, and symbiont tissue biomass were normalized to host surface area (cm-2) and endosymbiont density (cell-1).
DOI: 10.15468/dl.znrbeh
title: Occurrence Download

description: A dataset containing 15023 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "DatasetKey is Base de datos de colecciones de maíces nativos, teocintles y Tripsacum de México",
 "OccurrenceStatus is Present",
 "TaxonKey is Zea mays"
 ]
}

 The dataset includes 15023 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021517-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26008/1912/bco-dmo.884411.1
title: Carbonate Chemistry Parameters from a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i.

description: Two common reef-building corals, Montipora capitata and Pocillopora acuta, were collected from six sites in Kāne'ohe Bay, O'ahu, Hawai'i. Fragments were allowed to acclimate in experimental tanks for two weeks prior to exposure to one of the following four treatments: Ambient Temperature Ambient pCO2 (ATAC), Ambient Temperature High pCO2 (ATHC), High Temperature Ambient pCO2 (HTAC), and High Temperature High pCO2 (HTHC). The treatment period lasted for a two month period, starting on September 22nd, 2018 and lasting through November 17th, 2018. Following the stress period, coral fragments were exposed to a two-month recovery period in ambient conditions. 

Twice a week, water samples were taken and analyzed for carbonate chemistry parameters.
DOI: 10.26008/1912/bco-dmo.884551.1
title: Coral survivorship tracked during a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i.

description: Two common reef-building corals, Montipora capitata and Pocillopora acuta, were collected from six sites in Kāne'ohe Bay, O'ahu, Hawai'i. Fragments were allowed to acclimate in experimental tanks for two weeks prior to exposure to one of the following four treatments: Ambient Temperature Ambient pCO2 (ATAC), Ambient Temperature High pCO2 (ATHC), High Temperature Ambient pCO2 (HTAC), and High Temperature High pCO2 (HTHC). The treatment period lasted for a two month period, starting on September 22nd, 2018 and lasting through November 17th, 2018. Following the stress period, coral fragments were exposed to a two-month recovery period in ambient conditions. 

Survivorship was tracked every day and analyzed for survivorship probability. This dataset includes the raw data of tracked survivorship.
DOI: 10.26008/1912/bco-dmo.884738.1
title: Temperature data measured during a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i

description: Two common reef-building corals, Montipora capitata and Pocillopora acuta, were collected from six sites in Kāne'ohe Bay, O'ahu, Hawai'i. Fragments were allowed to acclimate in experimental tanks for two weeks prior to exposure to one of the following four treatments: Ambient Temperature Ambient pCO2 (ATAC), Ambient Temperature High pCO2 (ATHC), High Temperature Ambient pCO2 (HTAC), and High Temperature High pCO2 (HTHC). The treatment period lasted for a two month period, starting on September 22nd, 2018 and lasting through November 17th, 2018. Following the stress period, coral fragments were exposed to a two-month recovery period in ambient conditions. 

HOBO loggers were placed in each tank and recorded temperature every ten minutes.
DOI: 10.26008/1912/bco-dmo.3676.1
title: Hydrothermal sediment temperature profiles sampled near Beggiatoa mats using Alivn's heatlow and temperature probes, deployed from R/V Atlantis cruises AT15-40, AT15-56 in the Guaymas Basin from 2008-2009

description: This dataset includes temperature profiles from hydrothermal sediments sampled near Beggiatoa mats using Alivn's heatlow and temperature probes, deployed from R/V Atlantis cruises AT15-40 and AT15-56 in the Guaymas Basin from 2008-2009.
DOI: 10.26008/1912/bco-dmo.885982.1
title: A characterization of microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using SSU rRNA gene sequencing from two size fractions, with a universal primer set that amplifies from prokaryotes and eukaryotes

description: This study aims to characterize microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using small subunit (SSU) rRNA gene sequencing from two size fractions (0.2-1 and 1-80 μm), with a universal primer set that amplifies both prokaryotic 16S and eukaryotic 18S rRNA genes. This allows for direct comparisons of diversity patterns in a single set of analyses. This dataset includes National Center for Biotechnology Information (NCBI) accession numbers and related sample information.
DOI: 10.15468/dl.fydhyp
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "TaxonKey is Pouteria sapota"
 ]
}

 The dataset includes 196 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021519-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26008/1912/bco-dmo.858599.1
title: Echosounder data from goliath grouper aggregations in Jupiter, FL from August 31 until November 30, 2020.

description: Echosounder data from goliath grouper aggregations in Jupiter, FL from August 31 until November 30, 2020.
DOI: 10.26008/1912/bco-dmo.885939.1
title: Environmental data, nutrients, and leucine and thymidine bacterial production from samples collected by CTD during cruises in the San Pedro Channel on R/V Yellowfin from 2005 to 2018

description: This dataset includes temperature, oxygen, and fluorescence were recorded by a Seabird Scientific SBE25plus Sealogger CTD during San Pedro Ocean Time-series (SPOT) cruises from 2005 to 2018. Nutrient variables include nitrite, nitrate, and phosphate. Satellite sea surface temperature, chlorophyll-a concentration, and surface productivity estimates were downloaded from the NOAA Coastwatch browser website. Leucine and thymidine bacterial production data are also included.
DOI: 10.26008/1912/bco-dmo.886299.1
title: Prochlorococcus cell concentrations during the BiG-RAPA expedition (Cruise MV1015) in the Peru Current and Eastern South Pacific Subtropical Gyre between November and December of 2010

description: These data include Prochlorococcus cell concentrations (total cell densities by flow cytometry and cell densities for specific ecotypes/clades determined by quantitative PCR).  Samples were collected during the C-MORE Biogeochemical Gradients Role in Arranging Planktonic Assemblages (BiG-RAPA) expedition (Cruise MV1015) in the Peru Current and Eastern South Pacific Subtropical Gyre between dates 2010-11-19 and 2010-12-10 along a zonal transect from the northern coast of Chile to the island of Rapa Nui. Prochlorococcus is an important primary producer in the oligotrophic South Pacific Gyre and these data facilitate studies examining Prochlorococcus' ecology.
DOI: 10.26008/1912/bco-dmo.858542.1
title: Wave height data from an artificial reef in Jupiter, FL acquired with an ADCP from July 18 August 19, 2020.

description: Wave height data from an artificial reef in Jupiter, FL acquired with an ADCP from July 18 August 19, 2020.
DOI: 10.26008/1912/bco-dmo.864372.1
title: Current Velocity data from an artificial reef in Jupiter, FL acquired with an ADCP from July 18 until December 4, 2020.

description: Current Velocity data from an artificial reef in Jupiter, FL acquired with an ADCP from July 18 until December 4, 2020
DOI: 10.26008/1912/bco-dmo.886218.1
title: Optimally Interpolated O2 anomalies based on World Ocean Database 2018

description: OIO2 is a gridded data product of dissolved oxygen interpolated from shipboard observations archived in the World Ocean Database 2018 (WOD18). The quality-controlled WOD18 data are averaged for each bin at 1°x1° and monthly resolution where mean, variance, and sample size are recorded from 1965 to 2014 for the bottle data, and from 1987 to 2014 for the CTD-O2 data.
DOI: 10.26008/1912/bco-dmo.887279.1
title: Behavioral assays to assess the ability of G. marleyi to detect and preferentially differentiate between Caribbean reef fish hosts in John Brewers Bay, St Thomas, US Virgin Islands

description: Gnathiid isopods are common crustacean parasites that inhabit all oceans from shorelines to depths of over 3000 m and use chemical cues to find their marine fish hosts. While gnathiids are host-generalists, hosts vary in their susceptibility to infestation. However, the mechanisms that mediate differential susceptibility are unknown. Here we used laboratory experiments to investigate if the chemical attractiveness of hosts explains differences in susceptibility of Caribbean reef fishes to infestation by a common Caribbean gnathiid isopod, Gnathia marleyi. We showed that while G. marleyi can detect and locate hosts using only chemical cues, they do not exhibit a preference for chemical cues produced by more susceptible fish species. We conclude that species-specific chemical cues are not the main mechanism driving differences in host susceptibility to gnathiid isopod infestation and that visual or post-attachment factors such as ease of obtaining a blood meal are likely mediators.
DOI: 10.26008/1912/bco-dmo.887304.1
title: Field experiments to determine the ability of gnathiid isopods to detect and locate Caribbean reef fish hosts using chemosensory cues in John Brewers Bay, St Thomas, US Virgin Island from June to August, 2019

description: Gnathiid isopods are common crustacean parasites that inhabit all oceans from shorelines to depths of over 3000 m and use chemical cues to find their marine fish hosts. While gnathiids are host-generalists, hosts vary in their susceptibility to infestation. However, the mechanisms that mediate differential susceptibility are unknown. Here we used field experiments to investigate if the chemical attractiveness of hosts explains differences in the susceptibility of Caribbean reef fishes to infestation by a common Caribbean gnathiid isopod, Gnathia marleyi. We showed that while G. marleyi can detect and locate hosts using only chemical cues, they do not exhibit a preference for chemical cues produced by more susceptible fish species. We conclude that species-specific chemical cues are not the main mechanism driving differences in host susceptibility to gnathiid isopod infestation and that visual or post-attachment factors such as ease of obtaining a blood meal are likely mediators.
DOI: 10.26008/1912/bco-dmo.885646.1
title: Intracellular pH (pHi) data collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021

description: This dataset contains intracellular pH (pHi) data. These data were published in Brown et al. (2022). 

Abstract for all data from the study (Brown et al., 2022) including this dataset: 

Ocean acidification is a growing threat to coral growth and the accretion of coral reef ecosystems. Corals inhabiting environments that already endure extreme diel pCO2 fluctuations, however, may represent acidification resilient populations capable of persisting on future reefs. Here, we examined the impact of pCO2 variability on the reef-building coral Pocillopora damicornis originating from reefs with contrasting environmental histories (variable reef flat vs. stable reef slope) following reciprocal exposure to stable (218 ± 9) or variable (911 ± 31) diel pCO2 amplitude (μtam) in aquaria over eight weeks. This study measured: growth (net calcification, extension, CaCO3 density) and physiology (dark respiration, light-enhanced dark respiration, host soluble protein, mycosporine-like amino acids, net photosynthesis, photosynthetic efficiency, endosymbiont density, chlorophyll a concentration, intracellular pH) of P. damicornis across treatment and origin. 

See all datasets related to this publication (https://www.bco-dmo.org/related-resource/885684).
DOI: 10.26008/1912/bco-dmo.885654.1
title: Experimental and in situ seawater temperature data collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021

description: This dataset contains experimental and in situ seawater temperature data collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021 (Brown et al., 2022). 

Abstract for all data from the study (Brown et al., 2022) including this dataset: 

Ocean acidification is a growing threat to coral growth and the accretion of coral reef ecosystems. Corals inhabiting environments that already endure extreme diel pCO2 fluctuations, however, may represent acidification resilient populations capable of persisting on future reefs. Here, we examined the impact of pCO2 variability on the reef-building coral Pocillopora damicornis originating from reefs with contrasting environmental histories (variable reef flat vs. stable reef slope) following reciprocal exposure to stable (218 ± 9) or variable (911 ± 31) diel pCO2 amplitude (μtam) in aquaria over eight weeks. This study measured: growth (net calcification, extension, CaCO3 density) and physiology (dark respiration, light-enhanced dark respiration, host soluble protein, mycosporine-like amino acids, net photosynthesis, photosynthetic efficiency, endosymbiont density, chlorophyll a concentration, intracellular pH) of P. damicornis across treatment and origin. 

See all datasets related to this publication (https://www.bco-dmo.org/related-resource/885684).
DOI: 10.26008/1912/bco-dmo.885659.1
title: Coral physiology and intracellular pH (pHi) collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021

description: This dataset contains coral physiology and intracellular pH (pHi) data collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021 (Brown et al., 2022).

Abstract for all data from the study (Brown et al., 2022) including this dataset: 

Ocean acidification is a growing threat to coral growth and the accretion of coral reef ecosystems. Corals inhabiting environments that already endure extreme diel pCO2 fluctuations, however, may represent acidification resilient populations capable of persisting on future reefs. Here, we examined the impact of pCO2 variability on the reef-building coral Pocillopora damicornis originating from reefs with contrasting environmental histories (variable reef flat vs. stable reef slope) following reciprocal exposure to stable (218 ± 9) or variable (911 ± 31) diel pCO2 amplitude (μtam) in aquaria over eight weeks. This study measured: growth (net calcification, extension, CaCO3 density) and physiology (dark respiration, light-enhanced dark respiration, host soluble protein, mycosporine-like amino acids, net photosynthesis, photosynthetic efficiency, endosymbiont density, chlorophyll a concentration, intracellular pH) of P. damicornis across treatment and origin. 

See all datasets related to this publication (https://www.bco-dmo.org/related-resource/885684).
DOI: 10.26008/1912/bco-dmo.885664.1
title: Net calcification of coral fragments collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021

description: This dataset contains the overall change in net calcification of the coral fragments (% change in buoyant weight per day). These data were collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021 (Brown et al., 2022).

Abstract for all data from the study (Brown et al., 2022) including this dataset: 

Ocean acidification is a growing threat to coral growth and the accretion of coral reef ecosystems. Corals inhabiting environments that already endure extreme diel pCO2 fluctuations, however, may represent acidification resilient populations capable of persisting on future reefs. Here, we examined the impact of pCO2 variability on the reef-building coral Pocillopora damicornis originating from reefs with contrasting environmental histories (variable reef flat vs. stable reef slope) following reciprocal exposure to stable (218 ± 9) or variable (911 ± 31) diel pCO2 amplitude (μtam) in aquaria over eight weeks. This study measured: growth (net calcification, extension, CaCO3 density) and physiology (dark respiration, light-enhanced dark respiration, host soluble protein, mycosporine-like amino acids, net photosynthesis, photosynthetic efficiency, endosymbiont density, chlorophyll a concentration, intracellular pH) of P. damicornis across treatment and origin. 

See all datasets related to this publication (https://www.bco-dmo.org/related-resource/885684).
DOI: 10.26008/1912/bco-dmo.885669.1
title: Experimental and in situ seawater nutrient data collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021

description: This dataset contains experimental and in situ seawater nutrient data. These data were collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021 (Brown et al., 2022).

Abstract for all data from the study (Brown et al., 2022) including this dataset: 

Ocean acidification is a growing threat to coral growth and the accretion of coral reef ecosystems. Corals inhabiting environments that already endure extreme diel pCO2 fluctuations, however, may represent acidification resilient populations capable of persisting on future reefs. Here, we examined the impact of pCO2 variability on the reef-building coral Pocillopora damicornis originating from reefs with contrasting environmental histories (variable reef flat vs. stable reef slope) following reciprocal exposure to stable (218 ± 9) or variable (911 ± 31) diel pCO2 amplitude (μtam) in aquaria over eight weeks. This study measured: growth (net calcification, extension, CaCO3 density) and physiology (dark respiration, light-enhanced dark respiration, host soluble protein, mycosporine-like amino acids, net photosynthesis, photosynthetic efficiency, endosymbiont density, chlorophyll a concentration, intracellular pH) of P. damicornis across treatment and origin. 

See all datasets related to this publication (https://www.bco-dmo.org/related-resource/885684).
DOI: 10.26008/1912/bco-dmo.885674.1
title: Experimental sump pCO2 data collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021

description: This dataset contains experimental sump pCO2 data. These data were collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021 (Brown et al., 2022).

Abstract for all data from the study (Brown et al., 2022) including this dataset: 

Ocean acidification is a growing threat to coral growth and the accretion of coral reef ecosystems. Corals inhabiting environments that already endure extreme diel pCO2 fluctuations, however, may represent acidification resilient populations capable of persisting on future reefs. Here, we examined the impact of pCO2 variability on the reef-building coral Pocillopora damicornis originating from reefs with contrasting environmental histories (variable reef flat vs. stable reef slope) following reciprocal exposure to stable (218 ± 9) or variable (911 ± 31) diel pCO2 amplitude (μtam) in aquaria over eight weeks. This study measured: growth (net calcification, extension, CaCO3 density) and physiology (dark respiration, light-enhanced dark respiration, host soluble protein, mycosporine-like amino acids, net photosynthesis, photosynthetic efficiency, endosymbiont density, chlorophyll a concentration, intracellular pH) of P. damicornis across treatment and origin. 

See all datasets related to this publication (https://www.bco-dmo.org/related-resource/885684).