cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15856122
title: TABLE 2 in Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures

description: TABLE 2 Composition of artificial pollen mixtures used in this study
Mixture typeMixture numberSpeciesRelative proportions in mixture (based on number of pollen grains)Relative proportions in mixture (based on estimates of DNA quantity)Sequencing facility and platformIncreasing species richness (2–9)1Broussonetia papyrifera, Artemisia tridentata, Zea mays0.323 5, 0.450 4, 0.2260.084 3, 0.685 9, 0.229 8EIGC HiSeq2Broussonetia papyrifera, Bassia scoparia, Artemisia tridentata, Poa pratensis, Zea mays0.445 2, 0.089 7, 0.231 5, 0.173 7, 0.060.138 0, 0.044 5, 0.419 1, 0.326 0, 0.072 4EIGC HiSeq3Populus tremuloides, Broussonetia papyrifera, Carya illinoinensis, Bassia scoparia, Artemisia tridentata, Poa pratensis, Zea mays0.136 5, 0.244 8, 0.137 3, 0.071 5, 0.194 1, 0.137 5, 0.0780.033 7, 0.084 7, 0.056 3, 0.039 6, 0.392 2, 0.288 0, 0.105 6GGC MiSeq4Populus tremuloides, Populus deltoides, Broussonetia papyrifera, Carya illinoinensis, Bassia scoparia, Ambrosia artemisiifolia, Artemisia tridentata, Poa pratensis, Zea mays0.178 2, 0.178 2, 0.157 1, 0.069 5, 0.028, 0.13, 0.232 7, 0.080 2, 0.0460.045 8, 0.045 8, 0.056 5, 0.029 6, 0.016 1, 0.077 5, 0.489 2, 0.174 8, 0.064 7GGC MiSeqDecreasing taxonomic relatedness (congeneric-different orders)5Populus deltoides, Populus tremuloidesUnknownGGC MiSeq6Poa pratensis, Zea mays0.491 9, 0.5080.600 6, 0.399 4GGC MiSeq7Broussonetia papyrifera, Artemisia tridentata0.411, 0.5890.106 7, 0.893 3GGC MiSeq8Broussonetia papyrifera, Poa pratensis0.538 8, 0.461 20.161 7, 0.838 3GGC MiSeqIncreasing rarity of Broussonetia papyrifera (0.5388–0.089 7 of pollen grains; 0.1617–0.016 0 of DNA in pollen grains)8Broussonetia papyrifera, Poa pratensis0.538 8, 0.461 20.161 7, 0.838 3GGC MiSeq9Broussonetia papyrifera, Poa pratensis0.151 4, 0.848 60.028 6, 0.971 4GGC MiSeq10Broussonetia papyrifera, Poa pratensis0.089 7, 0.910 30.016 0, 0.984 0GGC MiSeq11Broussonetia papyrifera, Poa pratensis0.094 5, 0.905 50.016 9, 0.983 1GGC MiSeq
description: Published as part of Bell, Karen L., Petit, Robert A., Cutler, Anya, Dobbs, Emily K., Macpherson, J. Michael, Read, Timothy D., Burgess, Kevin S. & Brosi, Berry J., 2021, Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures, pp. 16085 in Biological Diversity 11 (22) on page 16085, DOI: 10.1002/ece3.8281, http://zenodo.org/record/15856112
DOI: 10.3535/wck-tke-lw2
title: Inga punctata Willd.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ywe-3hd-wz5
title: Mikania Willd.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5281/zenodo.15856121
title: TABLE 2 in Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures

description: TABLE 2 Composition of artificial pollen mixtures used in this study
Mixture typeMixture numberSpeciesRelative proportions in mixture (based on number of pollen grains)Relative proportions in mixture (based on estimates of DNA quantity)Sequencing facility and platformIncreasing species richness (2–9)1Broussonetia papyrifera, Artemisia tridentata, Zea mays0.323 5, 0.450 4, 0.2260.084 3, 0.685 9, 0.229 8EIGC HiSeq2Broussonetia papyrifera, Bassia scoparia, Artemisia tridentata, Poa pratensis, Zea mays0.445 2, 0.089 7, 0.231 5, 0.173 7, 0.060.138 0, 0.044 5, 0.419 1, 0.326 0, 0.072 4EIGC HiSeq3Populus tremuloides, Broussonetia papyrifera, Carya illinoinensis, Bassia scoparia, Artemisia tridentata, Poa pratensis, Zea mays0.136 5, 0.244 8, 0.137 3, 0.071 5, 0.194 1, 0.137 5, 0.0780.033 7, 0.084 7, 0.056 3, 0.039 6, 0.392 2, 0.288 0, 0.105 6GGC MiSeq4Populus tremuloides, Populus deltoides, Broussonetia papyrifera, Carya illinoinensis, Bassia scoparia, Ambrosia artemisiifolia, Artemisia tridentata, Poa pratensis, Zea mays0.178 2, 0.178 2, 0.157 1, 0.069 5, 0.028, 0.13, 0.232 7, 0.080 2, 0.0460.045 8, 0.045 8, 0.056 5, 0.029 6, 0.016 1, 0.077 5, 0.489 2, 0.174 8, 0.064 7GGC MiSeqDecreasing taxonomic relatedness (congeneric-different orders)5Populus deltoides, Populus tremuloidesUnknownGGC MiSeq6Poa pratensis, Zea mays0.491 9, 0.5080.600 6, 0.399 4GGC MiSeq7Broussonetia papyrifera, Artemisia tridentata0.411, 0.5890.106 7, 0.893 3GGC MiSeq8Broussonetia papyrifera, Poa pratensis0.538 8, 0.461 20.161 7, 0.838 3GGC MiSeqIncreasing rarity of Broussonetia papyrifera (0.5388–0.089 7 of pollen grains; 0.1617–0.016 0 of DNA in pollen grains)8Broussonetia papyrifera, Poa pratensis0.538 8, 0.461 20.161 7, 0.838 3GGC MiSeq9Broussonetia papyrifera, Poa pratensis0.151 4, 0.848 60.028 6, 0.971 4GGC MiSeq10Broussonetia papyrifera, Poa pratensis0.089 7, 0.910 30.016 0, 0.984 0GGC MiSeq11Broussonetia papyrifera, Poa pratensis0.094 5, 0.905 50.016 9, 0.983 1GGC MiSeq
description: Published as part of Bell, Karen L., Petit, Robert A., Cutler, Anya, Dobbs, Emily K., Macpherson, J. Michael, Read, Timothy D., Burgess, Kevin S. & Brosi, Berry J., 2021, Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures, pp. 16085 in Biological Diversity 11 (22) on page 16085, DOI: 10.1002/ece3.8281, http://zenodo.org/record/15856112
DOI: 10.3535/he7-64g-gnl
title: Loranthaceae Juss.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/wwc-084-j3j
title: Mauria heterophylla Kunth

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5281/zenodo.15856123
title: TABLE 3 in Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures

description: TABLE 3 NCBI data for taxa of interest included in our kraken database, in addition to all available RefSeq assemblies
SpeciesTaxon IDAccessionTypeReferencesAmbrosia artemisiifolia4212PRJNA449949FASTQ(van Boheemen et al., 2017)Artemisia tridentata55611PRJNA258169FASTQ(Huynh et al., 2015)Bassia scoparia83154GCA_008642245Assembly(Patterson et al., 2019)Broussonetia papyrifera172644PRJNA437223FASTQ(Peng et al., 2019)Carya illinoinensis32201GCA_011037805Assembly(Huang et al., 2019)Poa pratensis4545PRJNA517968FASTQ(Y. Chen et al., 2019)Populus deltoides3696PRJNA430966FASTQ(Zhu et al., 2018)Populus tremuloides3693PRJNA299390FASTQNo linked publication
description: Published as part of Bell, Karen L., Petit, Robert A., Cutler, Anya, Dobbs, Emily K., Macpherson, J. Michael, Read, Timothy D., Burgess, Kevin S. & Brosi, Berry J., 2021, Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures, pp. 16086 in Biological Diversity 11 (22) on page 16086, DOI: 10.1002/ece3.8281, http://zenodo.org/record/15856112
DOI: 10.5281/zenodo.15856124
title: TABLE 3 in Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures

description: TABLE 3 NCBI data for taxa of interest included in our kraken database, in addition to all available RefSeq assemblies
SpeciesTaxon IDAccessionTypeReferencesAmbrosia artemisiifolia4212PRJNA449949FASTQ(van Boheemen et al., 2017)Artemisia tridentata55611PRJNA258169FASTQ(Huynh et al., 2015)Bassia scoparia83154GCA_008642245Assembly(Patterson et al., 2019)Broussonetia papyrifera172644PRJNA437223FASTQ(Peng et al., 2019)Carya illinoinensis32201GCA_011037805Assembly(Huang et al., 2019)Poa pratensis4545PRJNA517968FASTQ(Y. Chen et al., 2019)Populus deltoides3696PRJNA430966FASTQ(Zhu et al., 2018)Populus tremuloides3693PRJNA299390FASTQNo linked publication
description: Published as part of Bell, Karen L., Petit, Robert A., Cutler, Anya, Dobbs, Emily K., Macpherson, J. Michael, Read, Timothy D., Burgess, Kevin S. & Brosi, Berry J., 2021, Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures, pp. 16086 in Biological Diversity 11 (22) on page 16086, DOI: 10.1002/ece3.8281, http://zenodo.org/record/15856112
DOI: 10.3535/2zl-mqa-y35
title: Hymenophyllum Sm.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/93d-a2y-zx2
title: Lobelia cardinalis L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/f6k-2n6-ew5
title: Mosquitoxylum jamaicense Krug & Urb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ywt-rdd-h6k
title: Halenia rhyacophila C. K. Allen

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5281/zenodo.15856125
title: TABLE 4 in Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures

description: TABLE 4 Number of sequencing reads and Kraken2 k-mer fragments retained for analysis WGS sequencing data of pollen samples through processing steps of quality filtering and classification
SampleTotal readsRetained after filteringClassified FragmentsUnclassified FragmentsLevel of classification Genus SpeciesMixture 12,737,8062,418,106706,013 (58.39%)503,040 (41.61%)680,193 (56.30%)669,890 (55.45%)Mixture 22,589,9702,163,054679,753 (62.85%)401,774 (37.15%)660,046 (61.04%)653,062 (60.38%)Mixture 31,832,2341,715,760639,808 (74.58%)218,072 (25.42%)624,267 (72.76%)603,821 (70.38%)Mixture 41,877,3601,795,644682,921 (76.06%)214,901 (23.94%)665,730 (74.19%)635,180 (70.77%)Mixture 51,583,9261,498,748744,876 (99.40%)4,498 (0.60%)731,490 (97.55%)563,733 (75.17%)Mixture 61,524,1281,381,686525,819 (76.11%)165,024 (23.89%)516,610 (74.78%)513,957 (74.38%)Mixture 71,841,2021,777,146581,375 (65.43%)307,198 (34.57%)560,525 (63.05%)550,258 (61.89%)Mixture 81,499,6921,421,518543,432 (76.46%)167,327 (23.54%)533,301 (75.04%)530,254 (74.61%)Mixture 91,294,5221,227,674458,933 (74.76%)154,904 (25.24%)450,772 (73.42%)448,198 (73.01%)Mixture 101,355,2421,208,520447,215 (74.01%)157,045 (25.99%)439,119 (72.64%)436,536 (72.21%)Mixture 112,018,3161,828,026673,577 (73.69%)240,436 (26.31%)661,246 (72.33%)657,267 (71.89%)Ambrosia artemisiifolia1,924,1761,877,500656,579 (69.94%)282,171 (30.06%)630,876 (67.23%)621,140 (66.16%)Artemisia tridentata1,770,4241,722,090554,707 (64.42%)306,338 (35.58%)534,603 (62.09%)524,307 (60.90%)Bassia scoparia1,790,2561,735,430839,951 (96.80%)27,764 (3.20%)832,989 (96.00%)831,720 (95.84%)Broussonetia papyrifera30145 (71.43%)2 (28.57%)5 (71.43%)5 (71.43%)Carya illinoinensis3,049,0022,687,2141,279,514 (95.23%)64,093 (4.77%)1253842 (93.29%)1,250,232 (92.97%)Poa pratensis1,817,9841,736,554640,084 (73.72%)228,193 (26.28%)628302 (72.35%)624,364 (71.89%)Populus deltoides1,613,0621,565,038773,325 (98.83%)9,194 (1.17%)758913 (96.94%)556,430 (71.07%)Populus tremuloides1,664,1881,613,334804,651 (99.75%)2,016 (0.25%)791915 (98.11%)624,746 (77.39%)Zea mays1,610,9261,438,576700,507 (97.39%)18,781 (2.61%)689128 (95.76%)688,837 (95.68%)Negative control 113,24210,096152 (45.65%)181 (54.35%)141 (42.34%)128 (38.43%)
description: Published as part of Bell, Karen L., Petit, Robert A., Cutler, Anya, Dobbs, Emily K., Macpherson, J. Michael, Read, Timothy D., Burgess, Kevin S. & Brosi, Berry J., 2021, Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures, pp. 16088 in Biological Diversity 11 (22) on page 16088, DOI: 10.1002/ece3.8281, http://zenodo.org/record/15856112
DOI: 10.5281/zenodo.15856126
title: TABLE 4 in Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures

description: TABLE 4 Number of sequencing reads and Kraken2 k-mer fragments retained for analysis WGS sequencing data of pollen samples through processing steps of quality filtering and classification
SampleTotal readsRetained after filteringClassified FragmentsUnclassified FragmentsLevel of classification Genus SpeciesMixture 12,737,8062,418,106706,013 (58.39%)503,040 (41.61%)680,193 (56.30%)669,890 (55.45%)Mixture 22,589,9702,163,054679,753 (62.85%)401,774 (37.15%)660,046 (61.04%)653,062 (60.38%)Mixture 31,832,2341,715,760639,808 (74.58%)218,072 (25.42%)624,267 (72.76%)603,821 (70.38%)Mixture 41,877,3601,795,644682,921 (76.06%)214,901 (23.94%)665,730 (74.19%)635,180 (70.77%)Mixture 51,583,9261,498,748744,876 (99.40%)4,498 (0.60%)731,490 (97.55%)563,733 (75.17%)Mixture 61,524,1281,381,686525,819 (76.11%)165,024 (23.89%)516,610 (74.78%)513,957 (74.38%)Mixture 71,841,2021,777,146581,375 (65.43%)307,198 (34.57%)560,525 (63.05%)550,258 (61.89%)Mixture 81,499,6921,421,518543,432 (76.46%)167,327 (23.54%)533,301 (75.04%)530,254 (74.61%)Mixture 91,294,5221,227,674458,933 (74.76%)154,904 (25.24%)450,772 (73.42%)448,198 (73.01%)Mixture 101,355,2421,208,520447,215 (74.01%)157,045 (25.99%)439,119 (72.64%)436,536 (72.21%)Mixture 112,018,3161,828,026673,577 (73.69%)240,436 (26.31%)661,246 (72.33%)657,267 (71.89%)Ambrosia artemisiifolia1,924,1761,877,500656,579 (69.94%)282,171 (30.06%)630,876 (67.23%)621,140 (66.16%)Artemisia tridentata1,770,4241,722,090554,707 (64.42%)306,338 (35.58%)534,603 (62.09%)524,307 (60.90%)Bassia scoparia1,790,2561,735,430839,951 (96.80%)27,764 (3.20%)832,989 (96.00%)831,720 (95.84%)Broussonetia papyrifera30145 (71.43%)2 (28.57%)5 (71.43%)5 (71.43%)Carya illinoinensis3,049,0022,687,2141,279,514 (95.23%)64,093 (4.77%)1253842 (93.29%)1,250,232 (92.97%)Poa pratensis1,817,9841,736,554640,084 (73.72%)228,193 (26.28%)628302 (72.35%)624,364 (71.89%)Populus deltoides1,613,0621,565,038773,325 (98.83%)9,194 (1.17%)758913 (96.94%)556,430 (71.07%)Populus tremuloides1,664,1881,613,334804,651 (99.75%)2,016 (0.25%)791915 (98.11%)624,746 (77.39%)Zea mays1,610,9261,438,576700,507 (97.39%)18,781 (2.61%)689128 (95.76%)688,837 (95.68%)Negative control 113,24210,096152 (45.65%)181 (54.35%)141 (42.34%)128 (38.43%)
description: Published as part of Bell, Karen L., Petit, Robert A., Cutler, Anya, Dobbs, Emily K., Macpherson, J. Michael, Read, Timothy D., Burgess, Kevin S. & Brosi, Berry J., 2021, Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures, pp. 16088 in Biological Diversity 11 (22) on page 16088, DOI: 10.1002/ece3.8281, http://zenodo.org/record/15856112
DOI: 10.3535/zys-hw1-pel
title: Mosquitoxylum jamaicense Krug & Urb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/gp0-cf5-wga
title: Henriettea DC.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ze6-x2z-2pv
title: Mauria heterophylla Kunth

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5281/zenodo.15856128
title: TABLE 5 in Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures

description: TABLE 5 Qualitative accuracy of WGS of constructed pollen mixtures, in terms of correct species, genus and family level identification. For complete lists of taxa and numbers of sequencing reads, see Supplementary information s2 and s3
MixtureSpeciesTrue positive identificationGenusSpecies1Broussonetia papyriferaYesYesArtemisia tridentataYesYesZea maysYesYes2Broussonetia papyriferaYesYesBassia scopariaYesYesArtemisia tridentataYesYesPoa pratensisYesYesZea maysYesYes3Populus tremuloidesYesYesBroussonetia papyriferaYesYesCarya illinoinensisYesYesBassia scopariaYesYesArtemisia tridentataYesYesPoa pratensisYesYesZea maysYesYes4Populus tremuloidesYesYesPopulus deltoidesYesYesBroussonetia papyriferaYesYesCarya illinoinensisYesYesBassia scopariaYesYesAmbrosia artemisiifoliaYesYesArtemisia tridentataYesYesPoa pratensisYesYesZea maysYesYes5Populus tremuloidesYesYesPopulus deltoidesYesYes6Poa pratensisYesYesZea maysYesYes7Broussonetia papyriferaYesYesArtemisia tridentataYesYes8Broussonetia papyriferaYesYesPoa pratensisYesYes9Broussonetia papyriferaYesYesPoa pratensisYesYes10Broussonetia papyriferaYesYesPoa pratensisYesYes11Broussonetia papyriferaYesYesPoa pratensisYesYesSingle speciesPopulus tremuloidesYesYesPopulus deltoidesYesYesBroussonetia papyriferaNoNoCarya illinoinensisYesYesBassia scopariaYesYesAmbrosia artemisiifoliaYesYesArtemisia tridentataYesYesPoa pratensisYesYesZea maysYesYes
(Continues)
description: Published as part of Bell, Karen L., Petit, Robert A., Cutler, Anya, Dobbs, Emily K., Macpherson, J. Michael, Read, Timothy D., Burgess, Kevin S. & Brosi, Berry J., 2021, Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures, pp. 16089 in Biological Diversity 11 (22) on page 16089, DOI: 10.1002/ece3.8281, http://zenodo.org/record/15856112
DOI: 10.3535/n4t-h12-9cr
title: Halenia rhyacophila C. K. Allen

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/q3j-v1k-pr5
title: Halenia rhyacophila C. K. Allen

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5281/zenodo.15856127
title: TABLE 5 in Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures

description: TABLE 5 Qualitative accuracy of WGS of constructed pollen mixtures, in terms of correct species, genus and family level identification. For complete lists of taxa and numbers of sequencing reads, see Supplementary information s2 and s3
MixtureSpeciesTrue positive identificationGenusSpecies1Broussonetia papyriferaYesYesArtemisia tridentataYesYesZea maysYesYes2Broussonetia papyriferaYesYesBassia scopariaYesYesArtemisia tridentataYesYesPoa pratensisYesYesZea maysYesYes3Populus tremuloidesYesYesBroussonetia papyriferaYesYesCarya illinoinensisYesYesBassia scopariaYesYesArtemisia tridentataYesYesPoa pratensisYesYesZea maysYesYes4Populus tremuloidesYesYesPopulus deltoidesYesYesBroussonetia papyriferaYesYesCarya illinoinensisYesYesBassia scopariaYesYesAmbrosia artemisiifoliaYesYesArtemisia tridentataYesYesPoa pratensisYesYesZea maysYesYes5Populus tremuloidesYesYesPopulus deltoidesYesYes6Poa pratensisYesYesZea maysYesYes7Broussonetia papyriferaYesYesArtemisia tridentataYesYes8Broussonetia papyriferaYesYesPoa pratensisYesYes9Broussonetia papyriferaYesYesPoa pratensisYesYes10Broussonetia papyriferaYesYesPoa pratensisYesYes11Broussonetia papyriferaYesYesPoa pratensisYesYesSingle speciesPopulus tremuloidesYesYesPopulus deltoidesYesYesBroussonetia papyriferaNoNoCarya illinoinensisYesYesBassia scopariaYesYesAmbrosia artemisiifoliaYesYesArtemisia tridentataYesYesPoa pratensisYesYesZea maysYesYes
(Continues)
description: Published as part of Bell, Karen L., Petit, Robert A., Cutler, Anya, Dobbs, Emily K., Macpherson, J. Michael, Read, Timothy D., Burgess, Kevin S. & Brosi, Berry J., 2021, Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures, pp. 16089 in Biological Diversity 11 (22) on page 16089, DOI: 10.1002/ece3.8281, http://zenodo.org/record/15856112
DOI: 10.3535/99c-052-t4j
title: Lindsaea Dryand. ex Sm.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.srybmr
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Eriosema diffusum"
 ]
}

 The dataset includes 182 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000198-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/dhq-s49-7cz
title: Justicia L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/gky-wfl-e3h
title: Metteniusa tessmanniana (Sleumer) Sleumer

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5281/zenodo.15856129
title: TABLE 6 in Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures

description: TABLE 6 Binomial mixed model to assess if method (WGS or amplicon sequencing) has a significant effect on the ability to identify true positives in a pollen mixture
DNA barcodeTaxonomic levelp -valueNrbcLSpecies Genus.0000003.0209759299 299ITS2Species Genus.0001272.0002302299 299rbcL and ITS2 combinedSpecies Genus.0027829.4333710294 294
description: Published as part of Bell, Karen L., Petit, Robert A., Cutler, Anya, Dobbs, Emily K., Macpherson, J. Michael, Read, Timothy D., Burgess, Kevin S. & Brosi, Berry J., 2021, Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures, pp. 16091 in Biological Diversity 11 (22) on page 16091, DOI: 10.1002/ece3.8281, http://zenodo.org/record/15856112
DOI: 10.5281/zenodo.15856130
title: TABLE 6 in Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures

description: TABLE 6 Binomial mixed model to assess if method (WGS or amplicon sequencing) has a significant effect on the ability to identify true positives in a pollen mixture
DNA barcodeTaxonomic levelp -valueNrbcLSpecies Genus.0000003.0209759299 299ITS2Species Genus.0001272.0002302299 299rbcL and ITS2 combinedSpecies Genus.0027829.4333710294 294
description: Published as part of Bell, Karen L., Petit, Robert A., Cutler, Anya, Dobbs, Emily K., Macpherson, J. Michael, Read, Timothy D., Burgess, Kevin S. & Brosi, Berry J., 2021, Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures, pp. 16091 in Biological Diversity 11 (22) on page 16091, DOI: 10.1002/ece3.8281, http://zenodo.org/record/15856112
DOI: 10.3535/859-7tm-c8k
title: Neomirandea R. M. King & H. Rob.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/c84-k6j-hnn
title: Metteniusa tessmanniana (Sleumer) Sleumer

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/h11-k03-e1v
title: Metteniusa tessmanniana (Sleumer) Sleumer

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/mbs-d6g-5rm
title: Maxillaria vaginalis Rchb.f.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/r12-18h-216
title: Mollinedia Ruiz & Pav.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.