cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7cyte2
title: Occurrence Download

description: A dataset containing 2477889 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2020-2020"
 ]
}

 The dataset includes 2477889 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217544-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ozsjn9
title: Occurrence Download

description: A dataset containing 852 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corytophanes cristatus (Merrem, 1820)"
 ]
}

 The dataset includes 852 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010100-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56jrfu
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((6.275 51.775,6.325 51.775,6.325 51.825,6.275 51.825,6.275 51.775))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 63 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0307437-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8ucr3
title: Occurrence Download

description: A dataset containing 296232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is one of (Thunnus alalunga (Bonnaterre, 1788), Thunnus thynnus (Linnaeus, 1758), Katsuwonus pelamis (Linnaeus, 1758), Thunnus albacares (Bonnaterre, 1788), Thunnus obesus (Lowe, 1839), Thunnus atlanticus (Lesson, 1831), Thunnus orientalis (Temminck & Schlegel, 1844), Thunnus tonggol (Bleeker, 1851), Thunnus maccoyii (Castelnau, 1872), Auxis rochei (Risso, 1810), Auxis thazard (Lacepède, 1800), Allothunnus fallai Serventy, 1948)"
 ]
}

 The dataset includes 296232 records from 187 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267311-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdg37s
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Metzgeria furcata (L.) Dumort.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 123 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001527-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exhpou
title: Occurrence Download

description: A dataset containing 2085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-108.52429 12.98718,-78.47571 12.98718,-78.47571 25.01282,-108.52429 25.01282,-108.52429 12.98718))",
 "HasCoordinate is true",
 "TaxonKey is Amazona xantholora (G.R.Gray, 1859)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2085 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010101-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbq2uj
title: Occurrence Download

description: A dataset containing 647 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((6.325 53.275,6.375 53.275,6.375 53.325,6.325 53.325,6.325 53.275))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 647 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0307441-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mu4p9w
title: Occurrence Download

description: A dataset containing 1198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cephalobidae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than 2000"
 ]
}

 The dataset includes 1198 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0261888-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zpsbke
title: Occurrence Download

description: A dataset containing 1224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Juglans regia L."
 ]
}

 The dataset includes 1224 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035138-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hdhdx
title: Occurrence Download

description: A dataset containing 1105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bartsia alpina L.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 1105 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000597-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ilhgvc
title: Occurrence Download

description: A dataset containing 134659 species occurrences available in GBIF matching the query:
{
 "and" : [
 "EventDate is greater than or equal to 2015-01-01",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "PublishingCountry is China",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 134659 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010101-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9q6em
title: Occurrence Download

description: A dataset containing 100292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Cytisus scoparius subsp. reverchonii (Degen & Hervier) Rivas Goday & Rivas Mart.",
 "TaxonKey is Cytisus multiflorus (L'Hér.) Sweet",
 "TaxonKey is Cytisus grandiflorus DC.",
 "TaxonKey is Cytisus arboreus subsp. baeticus Webb",
 "TaxonKey is Cytisus arboreus (Desf.) DC.",
 "TaxonKey is Cytisophyllum sessilifolium (L.) O.Lang",
 "TaxonKey is Coronilla minima subsp. lotoides (W.D.J.Koch) Nyman",
 "TaxonKey is Coronilla minima L.",
 "TaxonKey is Coronilla juncea L."
 ]
 }
 ]
}

 The dataset includes 100292 records from 331 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254157-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t49lvq
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jikradia olitorius Say, 1830"
 ]
}

 The dataset includes 157 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002653-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.67mzyt
title: Occurrence Download

description: A dataset containing 4297741 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Ecuador"
 ]
}

 The dataset includes 4297741 records from 1153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010101-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18186846
title: SAFE scale Italian validation

description: This dataset was collected as part of the European project HORIZON-MSCA-2022-SE-01 “DOC-BOX: Development of a multimodal toolbox to ensure a fast and reliable diagnosis of consciousness disorders”. Specifically, one of the aims of the DOC-BOX project concerns the engagement of informal caregivers of patients with Disorder of Consciousness (DoC) in the clinical routine (Work Package 3). Within this framework, the SAFE scale was developed to collect the opinion of informal caregivers of patients with DoC about the patient’s ability to perform specific behaviors. The SAFE is composed by 14 items derived from the Coma Recovery Scale-revised item indicative of cognitively-mediated behaviors (i.e., indicative of a diagnosis of at least Minimally Conscious State minus). 

The validation procedure of the SAFE scale included the explanation of the scale to the informal caregivers of patients with DoC by an expert clinician. Starting from this day, informal caregivers observed their respective patients with DoC for 15 days. At the end of this observation period (i.e., T0), informal caregivers were required to fill in the SAFE scale by responding whether, in their opinion, the patient was able to perform a specific behavior in the previous 15 days (yes/no replies). Two days after (i.e., T1), informal caregivers were required to fill in the SAFE scale again, always by referring to the same observation period so as to test the test-retest reliability. Furthermore, clinicians independently assessed the patients with DoC multiple times during the above 15 days of observation and the patient’s best performance was taken into account.

The dataset contains data from 42 informal caregivers and their respective patients with DoC, collected in one neurological institute and two neuro-rehabilitation centers between 2021-2025. Specifically, the dataset includes informal caregiver’s sociodemographic data, patient’s sociodemographic and clinical data, informal caregiver’s responses to the SAFE item at T0 and T1, and the patient’s best performance at the CRS-r along with their diagnosis. See the Data Dictionary file for a detailed description of the dataset.
DOI: 10.5281/zenodo.18186845
title: SAFE scale Italian validation

description: This dataset was collected as part of the European project HORIZON-MSCA-2022-SE-01 “DOC-BOX: Development of a multimodal toolbox to ensure a fast and reliable diagnosis of consciousness disorders”. Specifically, one of the aims of the DOC-BOX project concerns the engagement of informal caregivers of patients with Disorder of Consciousness (DoC) in the clinical routine (Work Package 3). Within this framework, the SAFE scale was developed to collect the opinion of informal caregivers of patients with DoC about the patient’s ability to perform specific behaviors. The SAFE is composed by 14 items derived from the Coma Recovery Scale-revised item indicative of cognitively-mediated behaviors (i.e., indicative of a diagnosis of at least Minimally Conscious State minus). 

The validation procedure of the SAFE scale included the explanation of the scale to the informal caregivers of patients with DoC by an expert clinician. Starting from this day, informal caregivers observed their respective patients with DoC for 15 days. At the end of this observation period (i.e., T0), informal caregivers were required to fill in the SAFE scale by responding whether, in their opinion, the patient was able to perform a specific behavior in the previous 15 days (yes/no replies). Two days after (i.e., T1), informal caregivers were required to fill in the SAFE scale again, always by referring to the same observation period so as to test the test-retest reliability. Furthermore, clinicians independently assessed the patients with DoC multiple times during the above 15 days of observation and the patient’s best performance was taken into account.

The dataset contains data from 42 informal caregivers and their respective patients with DoC, collected in one neurological institute and two neuro-rehabilitation centers between 2021-2025. Specifically, the dataset includes informal caregiver’s sociodemographic data, patient’s sociodemographic and clinical data, informal caregiver’s responses to the SAFE item at T0 and T1, and the patient’s best performance at the CRS-r along with their diagnosis. See the Data Dictionary file for a detailed description of the dataset.
DOI: 10.15156/bio/sh0156900.10fu
title: SH0156900.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0156901.10fu
title: SH0156901.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.17483738
title: Case report: Blood single-cell analysis of a IVB high-grade serous ovarian cancer patient presenting a favorable prognosis

description: Background: High-grade serous ovarian cancer (HGSOC) diagnosed at stage IVB typically carries a poor prognosis. Here, we describe a rare case with an exceptional and sustained response to therapy. To explore potential drivers of this favorable outcome, we combined clinical evaluation with molecular profiling of liquid biopsy samples.Methods: We employed a multi-platform liquid biopsy approach in peripheral blood samples collected preoperatively. Bulk RNA sequencing was performed on platelet RNA, while single-cell RNA sequencing (scRNA-seq) profiled peripheral blood mononuclear cells (PBMCs). Additionally, circulating tumor cells were identified using imaging flow cytometry (imFC).Results: Single-cell transcriptomic analysis identified two candidate CTCs (Circulating Tumor Cells) : one with an epithelial phenotype and another with a hybrid epithelial–mesenchymal (EMT) phenotype. The EMT CTC showed upregulation of IL12A, genes involved in the mTOR pathway (RPTOR, RICTOR, MTOR), and DNA repair, while the epithelial CTC expressed high levels of VEGFA. ImFC-based assay identified one putative mesenchymal-like CTC. Platelet RNA analysis revealed downregulation of ribosomal genes and upregulation of genes related to cytoskeletal remodeling and adhesion. ANGPT1 was downregulated, while AKT1 were upregulated, putatively indicating mTOR pathway activation. Glycolytic enzymes PKM and PGK1 were strongly upregulated, and reduced expression of DDIT4, HIF1A, CSF2RA, and CSF3R suggested altered stress and cytokine signaling.Conclusion: This integrative molecular and phenotypic profiling of blood-derived components identified potentially distinct molecular signatures, such as overexpression of IL12, ANGPT1 downregulation and HIF1A downregulation, in the literature described as linked to the patient's beneficial prognosis. These findings suggest that advanced liquid biopsy techniques may provide complementary insights into prognostic biomarkers and therapeutic targets in HGSOC.
DOI: 10.5281/zenodo.17483739
title: Case report: Blood single-cell analysis of a IVB high-grade serous ovarian cancer patient presenting a favorable prognosis

description: Background: High-grade serous ovarian cancer (HGSOC) diagnosed at stage IVB typically carries a poor prognosis. Here, we describe a rare case with an exceptional and sustained response to therapy. To explore potential drivers of this favorable outcome, we combined clinical evaluation with molecular profiling of liquid biopsy samples.Methods: We employed a multi-platform liquid biopsy approach in peripheral blood samples collected preoperatively. Bulk RNA sequencing was performed on platelet RNA, while single-cell RNA sequencing (scRNA-seq) profiled peripheral blood mononuclear cells (PBMCs). Additionally, circulating tumor cells were identified using imaging flow cytometry (imFC).Results: Single-cell transcriptomic analysis identified two candidate CTCs (Circulating Tumor Cells) : one with an epithelial phenotype and another with a hybrid epithelial–mesenchymal (EMT) phenotype. The EMT CTC showed upregulation of IL12A, genes involved in the mTOR pathway (RPTOR, RICTOR, MTOR), and DNA repair, while the epithelial CTC expressed high levels of VEGFA. ImFC-based assay identified one putative mesenchymal-like CTC. Platelet RNA analysis revealed downregulation of ribosomal genes and upregulation of genes related to cytoskeletal remodeling and adhesion. ANGPT1 was downregulated, while AKT1 were upregulated, putatively indicating mTOR pathway activation. Glycolytic enzymes PKM and PGK1 were strongly upregulated, and reduced expression of DDIT4, HIF1A, CSF2RA, and CSF3R suggested altered stress and cytokine signaling.Conclusion: This integrative molecular and phenotypic profiling of blood-derived components identified potentially distinct molecular signatures, such as overexpression of IL12, ANGPT1 downregulation and HIF1A downregulation, in the literature described as linked to the patient's beneficial prognosis. These findings suggest that advanced liquid biopsy techniques may provide complementary insights into prognostic biomarkers and therapeutic targets in HGSOC.
DOI: 10.48733/ifjpan/tkdl2v
title: Dielectric study on non-equilibrium relaxation dynamics of the protic ionic liquid verapamil hydrochloride (VH) in nanopore-confinement - research data

description: The protic ionic liquid verapamil hydrochloride (VH) confined in anodic aluminum oxide (AAO) nanopores was used to investigate non-equilibrium relaxation dynamics under confinement. For this purpose, a series of time-dependent dielectric measurements were performed to examine the influence of pore size, annealing temperature, and temperature-jump depth on the equilibration kinetics of nanopore-confined VH. The obtained data were further used to analyze conductivity relaxation and to estimate the extent of pressure and volume changes induced by the nanoporous geometry. The dataset includes raw dielectric spectroscopy data, detailed descriptions of the AAO nanopore infiltration procedure, and experimental conditions. The data were used in the publication: Chat, K.; Skrzydelska, K.; Sikora, E.; Pytlik, Z.; Adrjanowicz, K. Dielectric study on non-equilibrium relaxation dynamics of the protic ionic liquid verapamil hydrochloride (VH) in nanopore confinement. Journal of Molecular Liquids 2025, 433, 127859. https://doi.org/10.1016/j.molliq.2025.127859
DOI: 10.15468/dl.7reygn
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009564-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fskla6
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001492-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s3n3s2
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glycine tabacina (Labill.) Benth.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 68 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0207048-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oott1b
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004582-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iyb30l
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009688-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.