cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/958jy25df5.1
title: Data on the treatment of nitrate contaminated wastewater using a continuous upflow palm fiber biofilm electrode reactor (PBER)

description: The infiltration of residual nitrate nitrogen fertilizer carried by runoff is the primary cause of this pollution. As a potential means to improve bioremediation performance and overcome these limitations, electrode biofilm technology has attracted widespread attention.This study constructed a continuously upflow PBER to investigate the effects of C/N ratio, HRT, and inflow method on the denitrification performance of PBER, and analyzed the microbial community structure of the reactor under different inflow methods. The continuous upflow palm fiber biofilm electrode reactor (PBER) constructed in this study achieved a nitrate removal efficiency of 97.9% ± 0.6% and a nitrate removal rate of 6.15 ± 0.08 mg-N/(L·h) under optimal operating conditions (current density of 250 mA/m2, C/N ratio of 1.5, HRT of 8 hours, and vertical inflow). The accumulation of nitrite and ammonium nitrogen in the effluent was relatively low. Microbial analysis showed that the inflow method influenced the community composition and abundance of dominant denitrifying bacteria in the two systems, with lower microbial diversity observed in the vertical inflow PBER. Both vertical and parallel inflow PBER systems showed enrichment of the hydrogen autotrophic denitrifying bacterium Thauera. Additionally, vertical inflow PBER exhibited enrichment of Azonexus, a bacterium capable of extracellular electron transfer. The PBER demonstrated high efficiency and low energy consumption, achieving efficient and stable nitrate removal while also facilitating the resource utilization of agricultural and forestry waste.
DOI: 10.15468/4yhgkb
title: UNCW JAX Aerial Survey - Left side - 2016

description: Original provider:
University of North Carolina, Wilmington

Dataset credits:
William A. McLellan, University of North Carolina Wilmington
DOI: 10.82144/47732232
title: UNCW Hatteras Aerial Survey - Right side - 2016

description: Original provider:
University of North Carolina, Wilmington

Dataset credits:
William A. McLellan, University of North Carolina Wilmington
DOI: 10.15468/dl.adu7hg
title: Occurrence Download

description: A dataset containing 1144918150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1144918150 records from 8368 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004294-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mfx77t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (list(type = \"in\", key = \"CLASS_KEY\", values = c(\"216\", \"367\")), list(type = \"equals\", key = \"COUNTRY\", value = \"CA\"), list(type = \"equals\", key = \"STATE_PROVINCE\", value = \"Quebec\"), list(type = \"greaterThanOrEquals\", key = \"DECIMAL_LATITUDE\", value = \"52\"), list(type = \"isNotNull\", parameter = \"SPECIES_KEY\"), list(list(type = \"equals\", key = \"HAS_GEOSPATIAL_ISSUE\", value = \"false\"), list(type = \"equals\", key = \"HAS_COORDINATE\", value = \"true\"), list(type = \"equals\", key = \"OCCURRENCE_STATUS\", value = \"PRESENT\"), list(list(type = \"in\", key = \"BASIS_OF_RECORD\", values = c(\"FOSSIL_SPECIMEN\", \"LIVING_SPECIMEN\")))))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006486-260208012135463/datasets/export for details.
DOI: 10.15468/dl.s3n24z
title: Occurrence Download

description: A dataset containing 471 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus culminicola"
 ]
}

 The dataset includes 471 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006489-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcht99
title: Occurrence Download

description: A dataset containing 18605 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Misgurnus anguillicaudatus",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 18605 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006488-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwppge
title: Occurrence Download

description: A dataset containing 53021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.12777 48.4376,-98.12777 27.64926,-84.27494 30.58264,-81.19654 25.5222,-79.37748 26.02622,-69.58255 43.48155,-74.06023 47.87755,-100.78639 52.4446,-98.12777 48.4376))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sciurus niger",
 "Year 2006-2026"
 ]
}

 The dataset includes 53021 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006450-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.updsjy
title: Occurrence Download

description: A dataset containing 1211 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spizella wortheni"
 ]
}

 The dataset includes 1211 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006490-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtmmnn
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agkistrodon taylori"
 ]
}

 The dataset includes 77 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006493-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18601866
title: IN THE FOOTSTEPS OF THE JADIDS: NATIONAL AWAKENING, EDUCATIONAL REFORMS, AND THE FORMATION OF MODERN THINKING IN TURKESTAN

description: This scholarly article presents a comprehensive analysis of the historical, socio-political, and cultural-educational essence of the Jadid movement that emerged in Turkestan at the turn of the late nineteenth and early twentieth centuries. Special attention is given to the Jadids’ efforts to reform the traditional education system, as well as their role in awakening national consciousness through the press, literature, and theater. The article examines the intellectual and ideological legacy of the Jadids and highlights its relevance in the contemporary context of globalization, particularly in shaping modern thinking and educating the younger generation. The Jadid movement is interpreted as a crucial stage in the process of national modernization and spiritual renewal.
DOI: 10.15468/dl.45k5d7
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scopaeocharax rhinodus",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 56 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006495-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18601865
title: IN THE FOOTSTEPS OF THE JADIDS: NATIONAL AWAKENING, EDUCATIONAL REFORMS, AND THE FORMATION OF MODERN THINKING IN TURKESTAN

description: This scholarly article presents a comprehensive analysis of the historical, socio-political, and cultural-educational essence of the Jadid movement that emerged in Turkestan at the turn of the late nineteenth and early twentieth centuries. Special attention is given to the Jadids’ efforts to reform the traditional education system, as well as their role in awakening national consciousness through the press, literature, and theater. The article examines the intellectual and ideological legacy of the Jadids and highlights its relevance in the contemporary context of globalization, particularly in shaping modern thinking and educating the younger generation. The Jadid movement is interpreted as a crucial stage in the process of national modernization and spiritual renewal.
DOI: 10.5281/zenodo.18493558
title: Central and western Baltic Sea data and ecosystem risk assessment for 2020

description: Open data repository for central and western Baltic Sea data and results from two ecosystem risk assessment models for 2020. The models were a Multi K-means-based unsupervised risk assessment process and a deep learning-based model (Variational Autoencoder, VAE) with the consecutive re-application of Multi K-means to the anomalies identified by the VAE.
DOI: 10.5281/zenodo.18593119
title: Central and western Baltic Sea data and ecosystem risk assessment for 2020

description: Open data repository for central and western Baltic Sea data and results from two ecosystem risk assessment models for 2020. The models were a Multi K-means-based unsupervised risk assessment process and a deep learning-based model (Variational Autoencoder, VAE) with the consecutive re-application of Multi K-means to the anomalies identified by the VAE.
DOI: 10.5281/zenodo.18601595
title: Molecular dynamics trajectories of human Pin1

description: `P12479_top100_invdist.tar` -- featured trajectory data for simulations in amber99sb-ildn-nmr1. 

Unpacked archive consists of `*.npy` numpy arrays with dimension $M \times N$ where M is the number of inverse distance features  and $N$ is the number frames (100 ps per snapshot).
DOI: 10.5281/zenodo.18601596
title: Molecular dynamics trajectories of human Pin1

description: `P12479_top100_invdist.tar` -- featured trajectory data for simulations in amber99sb-ildn-nmr1. 

Unpacked archive consists of `*.npy` numpy arrays with dimension $M \times N$ where M is the number of inverse distance features  and $N$ is the number frames (100 ps per snapshot).
DOI: 10.15468/dl.m5avd2
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is one of (North America, South America)",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (Plantas vasculares), Atlas de coleópteros Scarabaeoidea de México)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (ff90b050-c256-11db-b71b-b8a03c50a862, 28eb1a3f-1c15-4a95-931a-4af90ecb574d)",
 "TaxonKey is Plusiotis"
 ]
}

 The dataset includes 134 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006498-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tdcbt5
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.43116 16.54595,-94.29850 16.54595,-94.29850 18.19974,-98.43116 18.19974,-98.43116 16.54595))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lynx rufus"
 ]
}

 The dataset includes 82 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006501-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.arydej
title: Occurrence Download

description: A dataset containing 4109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Atriplex confertifolia"
 ]
}

 The dataset includes 4109 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006503-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18601878
title: Bureaucracy as physical violence
DOI: 10.5281/zenodo.18601877
title: Bureaucracy as physical violence
DOI: 10.5281/zenodo.18601880
title: Battery Imaging Library: Laboratory X-ray nano-CT of pristine graphite electrode

description: This entry contains the reconstructed lab X-ray nano-CT data of a pristine graphite anode taken in large field of view model with combined phase and absorption imaging. Experiment performed and data acquired at NREL by D. Finegan. R. Docherty, S. J. Cooper and A. Vamvakeros did the data curation for BIL.

If you use these data, then please cite the Battery Imaging Library website and the following paper:

Battery Imaging Library: Multi-length scale and multi-modal synchrotron and laboratory battery imaging data for all, R. Docherty et al., 2025
description: Funding: Royal Society Industry Fellowship IF\R2\222059. The Battery Imaging Library is intended for academic and educational purposes. Commercial use should be discussed with the authors.
DOI: 10.5281/zenodo.18601879
title: Battery Imaging Library: Laboratory X-ray nano-CT of pristine graphite electrode

description: This entry contains the reconstructed lab X-ray nano-CT data of a pristine graphite anode taken in large field of view model with combined phase and absorption imaging. Experiment performed and data acquired at NREL by D. Finegan. R. Docherty, S. J. Cooper and A. Vamvakeros did the data curation for BIL.

If you use these data, then please cite the Battery Imaging Library website and the following paper:

Battery Imaging Library: Multi-length scale and multi-modal synchrotron and laboratory battery imaging data for all, R. Docherty et al., 2025
description: Funding: Royal Society Industry Fellowship IF\R2\222059. The Battery Imaging Library is intended for academic and educational purposes. Commercial use should be discussed with the authors.
DOI: 10.5281/zenodo.18599741
title: Fly motion vision maximizes signal energy transfer between mechanical input and sensor output

description: Data and Code for: Fly motion vision maximizes signal energy transfer between mechanical input and sensor output

 

J. Sean Humbert

Department of Mechanical Engineering, University of Colorado, Boulder, CO, US

sean.humbert@colorado.edu

 

Holger G. Krapp

Department of Bioengineering, Imperial College London, London, UK

h.g.krapp@imperial.ac.uk

 

Graham K. Taylor

Department of Biology, University of Oxford, Oxford, UK

graham.taylor@biology.ox.ac.uk

 

Description:

This repository contains the raw and processed data underlying Figures 2,3,4,5 and S3, S4, S5 and S7 of the associated manuscript, as well as MAT:AB scripts used to generate the plots. A description of the zip files can be found below:

 

·      MainScript.zip: This file contains the raw data and MATLAB source code for the direction encoding analysis of Calliphora LPTCs and the corresponding Hankel Singular value analysis.

 

·      CFD_LTI_Model.zip: This file contains the raw data and the MATLAB source code for generating the linearized models of Calliphora flight dynamics.

 

·      WingKinematics.zip: This file contains the raw data and MATLAB source code for the principal components analysis of Calliphora wingbeat motions to generate the control vector for the flight dynamics model.

 

Software Requirements:

Tested with MATLAB R2023b
DOI: 10.5281/zenodo.18601858
title: Fly motion vision maximizes signal energy transfer between mechanical input and sensor output

description: Data and Code for: Fly motion vision maximizes signal energy transfer between mechanical input and sensor output

 

J. Sean Humbert

Department of Mechanical Engineering, University of Colorado, Boulder, CO, US

sean.humbert@colorado.edu

 

Holger G. Krapp

Department of Bioengineering, Imperial College London, London, UK

h.g.krapp@imperial.ac.uk

 

Graham K. Taylor

Department of Biology, University of Oxford, Oxford, UK

graham.taylor@biology.ox.ac.uk

 

Description:

This repository contains the raw and processed data underlying Figures 2,3,4,5 and S3, S4, S5 and S7 of the associated manuscript, as well as MAT:AB scripts used to generate the plots. A description of the zip files can be found below:

 

·      MainScript.zip: This file contains the raw data and MATLAB source code for the direction encoding analysis of Calliphora LPTCs and the corresponding Hankel Singular value analysis.

 

·      CFD_LTI_Model.zip: This file contains the raw data and the MATLAB source code for generating the linearized models of Calliphora flight dynamics.

 

·      WingKinematics.zip: This file contains the raw data and MATLAB source code for the principal components analysis of Calliphora wingbeat motions to generate the control vector for the flight dynamics model.

 

Software Requirements:

Tested with MATLAB R2023b
DOI: 10.15468/dl.auxn4a
title: Occurrence Download

description: A dataset listing the 63 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is SBC LTER Darwin Core Archive: Kelp Forest Reef Fish Abundance"
 ]
}

 The dataset's 63 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006492-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.ktmozk
title: Analysis of changes in the intertropical convergence zone in global storm-resolving simulations

description: The scripts in this dataset analyse the changes in the intertropical convergence zone projected by global, storm-resolving simulations. The results from the scripts are used in the manuscript 'Projected changes in the intertropical convergence zone in global storm-resolving simulations', Praturi & Hohenegger.
DOI: 10.5281/zenodo.15073167
title: GnnDebugger: Datasets and Models
title: GNN based error correction in De Bruijn Graphs with low coverage reads
DOI: 10.5281/zenodo.18601763
title: GnnDebugger: Datasets and Models
title: GNN based error correction in De Bruijn Graphs with low coverage reads
DOI: 10.25982/156785.278/2588866
title: Produced Water DNA Database (PW-DNA): Utilizing KBase to generate an environmental specific curated molecular database

description: The deep subsurface is estimated to host the majority of Earth’s microbial biomass yet remains one of the most challenging environments to access and study. One common approach to investigate these microbial communities is through the analysis of produced water from subsurface reservoirs, where researchers can assess water and gas chemistry along with molecular (DNA/RNA) sequence data. Advances in high-throughput sequencing have greatly expanded our understanding of these environments and their biotechnological potential. However, further progress requires large-scale, integrative meta-analyses across diverse datasets.
<br>
<br>
To address this need, we developed the Produced Water-DNA (PW-DNA) Database, a curated, publicly available resource that consolidates microbial DNA/RNA sequences, geochemical data, and relevant metadata from in situ hydrocarbon environments such as coal beds, oil reservoirs, and natural gas systems. The PW-DNA database delivers three core benefits to the research community: (1) it improves data sharing by linking environmental microbial datasets with corresponding geochemical parameters, enabling more robust filtering and analysis; (2) it connects with complementary research databases to promote broader dissemination and interoperability; and (3) it supports technological innovation by serving as a resource for identifying microbial trends and exploring genetic potential.
<br>
<br>
While individual studies have highlighted basin-specific microbial communities and functional redundancy in biogeochemical cycling, a comprehensive, system-wide perspective is needed to better understand connectivity and novelty across subsurface ecosystems. By designing the PW-DNA in the KBase platform, we provide a reproducible, visual framework for integrating large-scale genomic and geochemical data, enabling researchers to perform more informed analyses and experimental design. Ultimately, this resource enhances the ability to identify, characterize, and interpret microbial functions across diverse subsurface environments, thereby accelerating discovery in subsurface microbiology and biotechnology.
DOI: 10.5281/zenodo.18601908
title: THE ROLE OF THE DUTOR IN MAQAM ENSEMBLES AND MAQAM MELODIES

description: This article presents a comprehensive scholarly study of the role and artistic significance of the dutor in maqam ensembles and within the melodic structure of maqam repertoire.

The research explores the historical development of the instrument, its timbral and technical characteristics, and its functional role in ensemble performance and maqam interpretation. Special attention is given to the dutor’s contribution to modal stability, internal musical balance, and stylistic continuity within traditional Uzbek maqam performance practice.
DOI: 10.5281/zenodo.18601907
title: THE ROLE OF THE DUTOR IN MAQAM ENSEMBLES AND MAQAM MELODIES

description: This article presents a comprehensive scholarly study of the role and artistic significance of the dutor in maqam ensembles and within the melodic structure of maqam repertoire.

The research explores the historical development of the instrument, its timbral and technical characteristics, and its functional role in ensemble performance and maqam interpretation. Special attention is given to the dutor’s contribution to modal stability, internal musical balance, and stylistic continuity within traditional Uzbek maqam performance practice.
DOI: 10.15468/5ta21z
title: NEON Biorepository Herptile Voucher Collection (Ground Beetle Sampling Bycatch Archive Pooling)

description: Pooled catches of herptile specimens collected as bycatch during ground beetle pitfall sampling at terrestrial NEON sites.
Sampling

Catch collected biweekly (every 14 days) during the green season
Ten distributed base plots (pre-2023) or six plots (2023 onward) per site
Four traps (pre-2018) or three traps (2018 onward) per plot

Methods

Pitfall traps (16-oz cups with propylene glycol)

Preservation

Trap contents sorted into identified adult Carabids, other invertebrates, herpetiles, and small mammals.
In this sample type, herpetile bycatch from traps within a plot are pooled to conserve storage space
Stored in 95% ethanol at controlled temperature and humidity