cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12737223.v1
title: Additional file 11 of PiggyBac mutagenesis and exome sequencing identify genetic driver landscapes and potential therapeutic targets of EGFR-mutant gliomas

description: Additional file 11: Table S10. GDSC glioma drug sensitivities.
DOI: 10.6084/m9.figshare.12737142
title: Additional file 1 of The effect of growth hormone supplementation in poor ovarian responders undergoing IVF or ICSI: a meta-analysis of randomized controlled trials

description: Additional file 1.
DOI: 10.6084/m9.figshare.12737141
title: Additional file 4 of Functional assessment of bioprosthetic mitral valves by cardiovascular magnetic resonance: An in vitro validation and comparison to Doppler echocardiography

description: Additional file 4: Video S4 and Video S5. depict phase contrast images of a normal bioprosthetic valve from long- axis and short-axis views, respectively. Both views are used to ensure that flow volume is measured at the level of the prosthetic leaflet tips.
DOI: 10.6084/m9.figshare.12737142.v1
title: Additional file 1 of The effect of growth hormone supplementation in poor ovarian responders undergoing IVF or ICSI: a meta-analysis of randomized controlled trials

description: Additional file 1.
DOI: 10.6084/m9.figshare.12737141.v1
title: Additional file 4 of Functional assessment of bioprosthetic mitral valves by cardiovascular magnetic resonance: An in vitro validation and comparison to Doppler echocardiography

description: Additional file 4: Video S4 and Video S5. depict phase contrast images of a normal bioprosthetic valve from long- axis and short-axis views, respectively. Both views are used to ensure that flow volume is measured at the level of the prosthetic leaflet tips.
DOI: 10.6084/m9.figshare.12737090
title: Additional file 2 of Estimating the number and length of episodes in disability using a Markov chain approach

description: Additional file 2 We provide twelve files of R code which allow to replicate our examples and simulations, and an additional file containing a brief description of the individual files of code.
DOI: 10.6084/m9.figshare.12737090.v1
title: Additional file 2 of Estimating the number and length of episodes in disability using a Markov chain approach

description: Additional file 2 We provide twelve files of R code which allow to replicate our examples and simulations, and an additional file containing a brief description of the individual files of code.
DOI: 10.6084/m9.figshare.12737006
title: Additional file 14 of Polyploidization and pseudogenization in allotetraploid frog Xenopus laevis promote the evolution of aquaporin family in higher vertebrates

description: Additional file 14: Table S3. Expression of AQP family in different organs and at different development stages in X. laevis genome.
DOI: 10.6084/m9.figshare.12737007
title: Additional file 9 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 9. Genotypes.
DOI: 10.6084/m9.figshare.12737004
title: Additional file 8 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 8. Gene_expression_phenotypes.
DOI: 10.6084/m9.figshare.12737006.v1
title: Additional file 14 of Polyploidization and pseudogenization in allotetraploid frog Xenopus laevis promote the evolution of aquaporin family in higher vertebrates

description: Additional file 14: Table S3. Expression of AQP family in different organs and at different development stages in X. laevis genome.
DOI: 10.6084/m9.figshare.12737007.v1
title: Additional file 9 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 9. Genotypes.
DOI: 10.6084/m9.figshare.12736998
title: Additional file 7 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 7: Table S7. Gene lists used to generate the DAVID GO results.
DOI: 10.6084/m9.figshare.12737004.v1
title: Additional file 8 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 8. Gene_expression_phenotypes.
DOI: 10.6084/m9.figshare.12736995
title: Additional file 6 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 6: Table S6. Shared genes possessing an eQTL expressed in multiple tissues. For each gene, the tissue comparison (i.e if the gene is shared between cerebrum and hypothalamus, cerebrum and liver, liver and hypothalamus, or all three tissues), Gal4 and Gal6 gene location, Gal4 and Gal6 annotation number and the probeset itself are given.
DOI: 10.6084/m9.figshare.12736992
title: Additional file 5 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 5: Table S5. GO analysis for each of the tissue comparisons (pairwise overlaps between eQTL shared between cerebrum and liver, cerebrum and hypothalamus, hypothalamus and liver, and all three tissues. GO categories and terms are presented, along with the counts for each term, the nominal p-value (with this considered suggestive if P
DOI: 10.6084/m9.figshare.12736995.v1
title: Additional file 6 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 6: Table S6. Shared genes possessing an eQTL expressed in multiple tissues. For each gene, the tissue comparison (i.e if the gene is shared between cerebrum and hypothalamus, cerebrum and liver, liver and hypothalamus, or all three tissues), Gal4 and Gal6 gene location, Gal4 and Gal6 annotation number and the probeset itself are given.
DOI: 10.6084/m9.figshare.12736998.v1
title: Additional file 7 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 7: Table S7. Gene lists used to generate the DAVID GO results.
DOI: 10.6084/m9.figshare.12736983
title: Additional file 2 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 2: Table S2. GO analysis for each of the eQTL hotspots. GO categories and terms are presented, along with the counts for each term, the nominal p-value (with this considered suggestive if P
DOI: 10.6084/m9.figshare.12736989
title: Additional file 4 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 4: Table S4. Significant and suggestive overlaps between phenotypic QTL and eQTL. For each overlap, as well as the trait type and eQTL probeset, the % of variation in the phenotype explained by the probeset (adjusted R-squared), the correlation p-value (p-value of probeset expression in the model) and t-value, as well as the gene ID (ensgalg ID) are provided.
DOI: 10.6084/m9.figshare.12736992.v1
title: Additional file 5 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 5: Table S5. GO analysis for each of the tissue comparisons (pairwise overlaps between eQTL shared between cerebrum and liver, cerebrum and hypothalamus, hypothalamus and liver, and all three tissues. GO categories and terms are presented, along with the counts for each term, the nominal p-value (with this considered suggestive if P
DOI: 10.6084/m9.figshare.12736980
title: Additional file 1 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 1: Table S1. All eQTL present in the cerebrum tissue. For each eQTL, the chromosome, position (in cM), LOD score, confidence interval, direction of effect (whether the allele with the greater effect derived from the RJF or WL genotype), % of variance explained by the eQTL, the additive and dominance effects of each eQTL, plus the additive and dominance effects if a sex-interaction was also present, as well as information on the gene underlying each eQTL (whether it represented an annotated gene and the bp position of the gene).
DOI: 10.6084/m9.figshare.12736986
title: Additional file 3 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 3: Table S3. Overlaps between eQTL and phenotypic QTL. For each overlap, the phenotypic trait QTL, the eQTL probeset, the confidence intervals for the two QTL, and the eQTL type (whether it was a cis or trans eQTL) are shown.
DOI: 10.6084/m9.figshare.12736989.v1
title: Additional file 4 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 4: Table S4. Significant and suggestive overlaps between phenotypic QTL and eQTL. For each overlap, as well as the trait type and eQTL probeset, the % of variation in the phenotype explained by the probeset (adjusted R-squared), the correlation p-value (p-value of probeset expression in the model) and t-value, as well as the gene ID (ensgalg ID) are provided.
DOI: 10.6084/m9.figshare.12736977
title: Additional file 10 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 10. Phenotypes.
DOI: 10.6084/m9.figshare.12736980.v1
title: Additional file 1 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 1: Table S1. All eQTL present in the cerebrum tissue. For each eQTL, the chromosome, position (in cM), LOD score, confidence interval, direction of effect (whether the allele with the greater effect derived from the RJF or WL genotype), % of variance explained by the eQTL, the additive and dominance effects of each eQTL, plus the additive and dominance effects if a sex-interaction was also present, as well as information on the gene underlying each eQTL (whether it represented an annotated gene and the bp position of the gene).
DOI: 10.6084/m9.figshare.12736983.v1
title: Additional file 2 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 2: Table S2. GO analysis for each of the eQTL hotspots. GO categories and terms are presented, along with the counts for each term, the nominal p-value (with this considered suggestive if P
DOI: 10.6084/m9.figshare.12736986.v1
title: Additional file 3 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 3: Table S3. Overlaps between eQTL and phenotypic QTL. For each overlap, the phenotypic trait QTL, the eQTL probeset, the confidence intervals for the two QTL, and the eQTL type (whether it was a cis or trans eQTL) are shown.
DOI: 10.6084/m9.figshare.12736977.v1
title: Additional file 10 of The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution

description: Additional file 10. Phenotypes.
DOI: 10.6084/m9.figshare.12736967
title: Additional file 8 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 8: SI Table 3. Edgelist for GNA from gene set 4 and probability cut-off &gt; 0.5
DOI: 10.6084/m9.figshare.12736967.v1
title: Additional file 8 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 8: SI Table 3. Edgelist for GNA from gene set 4 and probability cut-off &gt; 0.5
DOI: 10.6084/m9.figshare.12736970
title: Additional file 9 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 9: SI Table 4. Ranking of network genes according to summarized centrality measure (see MM)
DOI: 10.6084/m9.figshare.12736964
title: Additional file 7 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 7: SI Table 2. TagMan probes for qRT-PCR validation of 1st-neigboors of CLIP2
DOI: 10.6084/m9.figshare.12736970.v1
title: Additional file 9 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 9: SI Table 4. Ranking of network genes according to summarized centrality measure (see MM)
DOI: 10.6084/m9.figshare.12736964.v1
title: Additional file 7 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 7: SI Table 2. TagMan probes for qRT-PCR validation of 1st-neigboors of CLIP2
DOI: 10.6084/m9.figshare.12736961
title: Additional file 6 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 6: SI Table 1. STR typing TPC-1 parental and clones
DOI: 10.6084/m9.figshare.12736961.v1
title: Additional file 6 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 6: SI Table 1. STR typing TPC-1 parental and clones
DOI: 10.6084/m9.figshare.12736944
title: Additional file 4 of Comprehensive analysis of spread through air spaces in lung adenocarcinoma and squamous cell carcinoma using the 8th edition AJCC/UICC staging system

description: Additional file 4:Supplementary Table 4. Multivariate Cox analysis of DFS in single stage ADC.
DOI: 10.6084/m9.figshare.12736943
title: Additional file 12 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 12: SI Table 7. Correlation test of 1st-neighboors of CLIP2 using qRT-PCR data
DOI: 10.6084/m9.figshare.12736940
title: Additional file 11 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 11: SI Table 6. Pathway enrichment analysis based on hypergeometrical test and HALLMARK gene sets
DOI: 10.6084/m9.figshare.12736943.v1
title: Additional file 12 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 12: SI Table 7. Correlation test of 1st-neighboors of CLIP2 using qRT-PCR data
DOI: 10.6084/m9.figshare.12736944.v1
title: Additional file 4 of Comprehensive analysis of spread through air spaces in lung adenocarcinoma and squamous cell carcinoma using the 8th edition AJCC/UICC staging system

description: Additional file 4:Supplementary Table 4. Multivariate Cox analysis of DFS in single stage ADC.
DOI: 10.6084/m9.figshare.12736937
title: Additional file 10 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 10: SI Table 5. 1st and 2nd neighborhood genes of CLIP2 in GNA from gene set 4 and edge-probability cut-off &gt; 0.5
DOI: 10.6084/m9.figshare.12736938
title: Additional file 2 of Comprehensive analysis of spread through air spaces in lung adenocarcinoma and squamous cell carcinoma using the 8th edition AJCC/UICC staging system

description: Additional file 2:Supplementary Table 2. Univariate survival analysis of DFS and OS in SQCC.
DOI: 10.6084/m9.figshare.12736941
title: Additional file 3 of Comprehensive analysis of spread through air spaces in lung adenocarcinoma and squamous cell carcinoma using the 8th edition AJCC/UICC staging system

description: Additional file 3:Supplementary Table 3. Univariate survival analysis of DFS and OS in single stage ADC.
DOI: 10.6084/m9.figshare.12736938.v1
title: Additional file 2 of Comprehensive analysis of spread through air spaces in lung adenocarcinoma and squamous cell carcinoma using the 8th edition AJCC/UICC staging system

description: Additional file 2:Supplementary Table 2. Univariate survival analysis of DFS and OS in SQCC.
DOI: 10.6084/m9.figshare.12736940.v1
title: Additional file 11 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 11: SI Table 6. Pathway enrichment analysis based on hypergeometrical test and HALLMARK gene sets
DOI: 10.6084/m9.figshare.12736941.v1
title: Additional file 3 of Comprehensive analysis of spread through air spaces in lung adenocarcinoma and squamous cell carcinoma using the 8th edition AJCC/UICC staging system

description: Additional file 3:Supplementary Table 3. Univariate survival analysis of DFS and OS in single stage ADC.
DOI: 10.6084/m9.figshare.12736935
title: Additional file 1 of Comprehensive analysis of spread through air spaces in lung adenocarcinoma and squamous cell carcinoma using the 8th edition AJCC/UICC staging system

description: Additional file 1:Supplementary Table 1. Primary antibodies used for immunohistochemistry
DOI: 10.6084/m9.figshare.12736937.v1
title: Additional file 10 of Transcriptome network of the papillary thyroid carcinoma radiation marker CLIP2

description: Additional file 10: SI Table 5. 1st and 2nd neighborhood genes of CLIP2 in GNA from gene set 4 and edge-probability cut-off &gt; 0.5
DOI: 10.6084/m9.figshare.12736935.v1
title: Additional file 1 of Comprehensive analysis of spread through air spaces in lung adenocarcinoma and squamous cell carcinoma using the 8th edition AJCC/UICC staging system

description: Additional file 1:Supplementary Table 1. Primary antibodies used for immunohistochemistry
DOI: 10.6084/m9.figshare.12736886
title: Additional file 6 of Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation

description: Additional file 6: Supplementary Data 6. The mRNA-miRNA-circRNA interaction analysis for all DE-circRNAs – see Full Excel version.
DOI: 10.6084/m9.figshare.12736886.v1
title: Additional file 6 of Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation

description: Additional file 6: Supplementary Data 6. The mRNA-miRNA-circRNA interaction analysis for all DE-circRNAs – see Full Excel version.
DOI: 10.6084/m9.figshare.12736880
title: Additional file 4 of Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation

description: Additional file 4: Supplementary Data 4. Details of the GO enrichment with statistical significance – see Full Excel version.
DOI: 10.6084/m9.figshare.12736883
title: Additional file 5 of Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation

description: Additional file 5: Supplementary Data 5. Details of the KEGG enrichment with statistical significance – see Full Excel version.
DOI: 10.6084/m9.figshare.12736877
title: Additional file 3 of Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation

description: Additional file 3: Supplementary Data 3. The sequence of DE-circRNAs in this study - see Full text version.
DOI: 10.6084/m9.figshare.12736883.v1
title: Additional file 5 of Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation

description: Additional file 5: Supplementary Data 5. Details of the KEGG enrichment with statistical significance – see Full Excel version.
DOI: 10.6084/m9.figshare.12736877.v1
title: Additional file 3 of Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation

description: Additional file 3: Supplementary Data 3. The sequence of DE-circRNAs in this study - see Full text version.
DOI: 10.6084/m9.figshare.12736880.v1
title: Additional file 4 of Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation

description: Additional file 4: Supplementary Data 4. Details of the GO enrichment with statistical significance – see Full Excel version.
DOI: 10.6084/m9.figshare.12736871
title: Additional file 1 of Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation

description: Additional file 1: Supplementary Data 1. Detail information of all the circRNAs identified in this study see Full Excel version.
DOI: 10.6084/m9.figshare.12736874
title: Additional file 2 of Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation

description: Additional file 2: Supplementary Data 2. Detail information of the differentially expressed circRNAs identified in this study – see Full Excel version.
DOI: 10.6084/m9.figshare.12736871.v1
title: Additional file 1 of Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation

description: Additional file 1: Supplementary Data 1. Detail information of all the circRNAs identified in this study see Full Excel version.
DOI: 10.6084/m9.figshare.12736874.v1
title: Additional file 2 of Analysis of exosomal circRNAs upon irradiation in pancreatic cancer cell repopulation

description: Additional file 2: Supplementary Data 2. Detail information of the differentially expressed circRNAs identified in this study – see Full Excel version.
DOI: 10.6084/m9.figshare.12736841
title: Additional file 7 of Genome-wide evolutionary characterization and expression analysis of SIAMESE-RELATED family genes in maize

description: Additional file 7 List of the SMR protein sequences in maize, Arabidopsis thaliana, rice, Brachypodium distachyod, millet, sorghum, soybean and Populus trichocarpa.
DOI: 10.6084/m9.figshare.12736847
title: Additional file 9 of Genome-wide evolutionary characterization and expression analysis of SIAMESE-RELATED family genes in maize

description: Additional file 9 Orthology genes of maize in Sorghum bicolor, Setaria italica, Oryza sativa and Brachypodium distachyon.
DOI: 10.6084/m9.figshare.12736835
title: Additional file 5 of Genome-wide evolutionary characterization and expression analysis of SIAMESE-RELATED family genes in maize

description: Additional file 5. Alignment results of genes on the same branch of the ZmSMR genes phylogenetic tree.
DOI: 10.6084/m9.figshare.12736847.v1
title: Additional file 9 of Genome-wide evolutionary characterization and expression analysis of SIAMESE-RELATED family genes in maize

description: Additional file 9 Orthology genes of maize in Sorghum bicolor, Setaria italica, Oryza sativa and Brachypodium distachyon.
DOI: 10.6084/m9.figshare.12736832
title: Additional file 4 of Genome-wide evolutionary characterization and expression analysis of SIAMESE-RELATED family genes in maize

description: Additional file 4. Genomic and intergenomic synteny SMR gene pairs in multiple species.
DOI: 10.6084/m9.figshare.12736835.v1
title: Additional file 5 of Genome-wide evolutionary characterization and expression analysis of SIAMESE-RELATED family genes in maize

description: Additional file 5. Alignment results of genes on the same branch of the ZmSMR genes phylogenetic tree.
DOI: 10.6084/m9.figshare.12736841.v1
title: Additional file 7 of Genome-wide evolutionary characterization and expression analysis of SIAMESE-RELATED family genes in maize

description: Additional file 7 List of the SMR protein sequences in maize, Arabidopsis thaliana, rice, Brachypodium distachyod, millet, sorghum, soybean and Populus trichocarpa.
DOI: 10.6084/m9.figshare.12736832.v1
title: Additional file 4 of Genome-wide evolutionary characterization and expression analysis of SIAMESE-RELATED family genes in maize

description: Additional file 4. Genomic and intergenomic synteny SMR gene pairs in multiple species.