cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.mmsepx
title: Occurrence Download

description: A dataset containing 3609 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mammals on map of Ukraine. Materials of the First Ukrainian Mammal Mapping Conference"
 ]
}

 The dataset includes 3609 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025750-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18221011
title: Large Language Model Embeddings from SNOMED CT

description: Embeddings for SNOMED CT concepts produced by Large Language Models (LLMs). Each NPZ file encodes a dictionary, which links the ID of a SNOMED CT concept to its corresponding embedding. The embeddings from the LLMs were obtained using the method described in LLM2Vec: Large Language Models Are Secretly Powerful Text Encoders (https://arxiv.org/abs/2404.05961) by prompting the model using the Fully-Specified Name of the concept.

File llm2vec_llama3_sct_dict.npz contains the embeddings extracted using Meta-Llama-3-8B-Instruct-mntp, whereas llm2vec_mistral7B_sct_dict.npz contains the embeddings generated using Mistral-7B-Instruct-v2-mntp.

These embeddings were generated and studied in the paper Assessing the Effectiveness of Embedding Methods in Capturing Clinical Information from SNOMED CT () and more information can also be found in the following repository: https://github.com/JavierCastellD/AssessingSNOMEDEmbeddings.
DOI: 10.15468/dl.6fpmjd
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Atlas de las Aves de México: Fase II",
 "TaxonKey is Amazona auropalliata"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004301-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgyx7c
title: Occurrence Download

description: A dataset containing 564 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycengraulis grossidens",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 564 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004302-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g6cmqg
title: Occurrence Download

description: A dataset containing 32680 records in GBIF matching the query:
SELECT
 '511' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 51.21395264452012
 AND decimalLatitude &lt;= 56.135291543055025
 AND decimalLongitude &gt;= 26.725752065563757
 AND decimalLongitude &lt;= 35.977550941762225
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 32680 records were derived from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004289-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktjuyz
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tegorhynchus africanus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004303-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6jptq
title: Occurrence Download

description: A dataset containing 523215 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi Photographique des Insectes Pollinisateurs (SPIPOLL)"
 ]
}

 The dataset includes 523215 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004293-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.x3ffbg7x8
title: Data from: The BumbleBox: An open-source platform for quantifying behavior in bumblebee colonies

description: The following data was collected using the BumbleBox over the course of 24
 hours, recording a small colony of bees every 5 minutes for 20 seconds, to
 demonstrate its normal output based on standard settings. See the Readme
 for more details.
description: # The BumbleBox: An open-source platform for quantifying behavior in
 bumblebee colonies Dataset DOI:
 [10.5061/dryad.x3ffbg7x8](10.5061/dryad.x3ffbg7x8) ## Description of the
 data and file structure The following data was collected as a
 demonstration using the BumbleBox, a device built to automate the capture
 of behavioral data in social insects. The following files were captured
 over the course of a day to demonstrate the normal output for the system,
 based on standard settings. Videos were not recorded to minimize storage
 requirements. Data capture was taken every 5 minutes for 24 hours, and for
 each data capture period there is a corresponding raw, updated, averages,
 pairwise distance, contacts, and noID csv file. There is also a single
 labelled nest csv file for the day based on the composite image that was
 created for that day.  Raw: this saves the date and time, frame number of
 the video, bee ID, and the (x,y) coordinates of the center of the Aruco
 tag and the top-center of the Aruco tag Updated: this file is a modified
 version of the raw file, but is interpolated and adds columns that
 calculate the speed of the bee (in pixels) from frame to frame, and the
 distance from the social center of the nest, which is calculated by
 averages the (x,y) coordinates of all bees in the nest. Averages: this
 file presents a running average for the bees of certain metrics like
 distance from center, speed, and number of frames tracked in each
 recording period. Pairwise distance: this file is a matrix representing
 the distance between each tracked bee at each frame of the video.
 Contacts: this file presents a list of contacts, which turns the pairwise
 distance matrix into a matrix of ones and zeros, where before the
 threshold distance, two bees are in contact (1), while outside of it, they
 are not (0). noID files can be used for tracking optimization purposes -
 these store the instances and locations where the tracking code found but
 rejected potential tag-like objects.  The nest image file demonstrates
 what an annotated csv file of a composite nest image looks like. The
 object index will remain the same value if the rows all relate to the same
 object.  ## Code/software All files are csv files, so any text editing
 software should work! ## Access information Other publicly accessible
 locations of the data: * n/a Data was derived from the following sources:
 * n/a
DOI: 10.15468/dl.dzvbne
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-80.19829 -2.74626,-77.75867 -2.74626,-77.75867 0.66039,-80.19829 0.66039,-80.19829 -2.74626))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lemna minor"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004304-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmdkm4
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mugil brevirostris",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 51 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004306-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kaapgg
title: Occurrence Download

description: A dataset containing 10207 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Indotyphlops braminus"
 ]
}

 The dataset includes 10207 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004307-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jqqdj
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptorhynchoides plagicephalus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004305-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.6m905qgbm
title: Data from: Drivers of kelp forest refugia during successive disturbance events

description: Cooler areas with localized upwelling acted as climate refugia during the
 increased ocean temperatures from the 2014-2016 marine heatwave,
 supporting nutrient-rich environments and mitigating heat stress for kelp
 forests. However, these temperature refugia often did not spatially
 overlap with areas providing protection from grazing pressure, leaving
 kelp forests vulnerable to future warming even within temperature refugia
 if grazing pressure remains high.
description: # Drivers of kelp forest refugia during successive disturbance events
 Dataset DOI: [10.5061/dryad.6m905qgbm](10.5061/dryad.6m905qgbm) ##
 Description of the data and file structure This dataset contains annual
 kelp canopy extent maps for northern California from 2017 to 2022. The
 maps cover the coastline between 40.031311°N and 38.430004°N, and all
 files are provided as GeoTIFFs at 3 m spatial resolution, with binary
 values indicating kelp presence (1) or absence (0). The annual kelp canopy
 maps from 2014 to 2016 used in this paper are already publicly available
 and can be found via the California Department of Fish and Wildlife.
 **2017–2022 (PlanetScope-Based Maps)** * Source: Derived from PlanetScope
 satellite imagery - Methods: * For each year, a minimum of five cloud-free
 images from September and  five cloud-free images from October were
 classified using a Naive Bayes model to detect kelp * Images were
 composited using a majority filter, where pixels labeled as kelp in ≥50%
 of input images were assigned kelp in the final map * For methodological
 details, see: Cavanaugh et al. (2023), "CubeSats show persistence of
 bull kelp refugia amidst a regional collapse in California" * File
 names: * northCoast_refugia_2017.tif * northCoast_refugia_2018.tif *
 northCoast_refugia_2019.tif * northCoast_refugia_2020.tif *
 northCoast_refugia_2021.tif * northCoast_refugia_2022.tif ## Code/software
 Files are GeoTiff format and can be loaded using any compatible coding or
 GIS platform (i.e., R, Matlab, QGIS, ArcGIS Pro, etc.).
DOI: 10.15468/dl.baky4v
title: Occurrence Download

description: A dataset containing 856636 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Xeno-canto - Bird sounds from around the world"
 ]
}

 The dataset includes 856636 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004298-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rhcsg3
title: Occurrence Download

description: A dataset containing 723537 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oryctolagus cuniculus"
 ]
}

 The dataset includes 723537 records from 2933 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004282-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18446592
title: HippUnfold: tpl-multihist7 surface-based template and atlas for dev-v2.0.0, with updated (rotated) unfolded space

description: Surface-based template files for dev-v2.0.0

 

repo: https://github.com/khanlab/hippunfold-atlases.git

commit 9c10d3c037fa46c95ec5e7ca5ef47fd26bd9037b

branch: updated-unfold

 

Note: previous retracted zenodo upload had wrong zip file
DOI: 10.15468/dl.75jc4y
title: Occurrence Download

description: A dataset containing 819 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galphimia glauca",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 819 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004223-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18411397
title: PhysarumAI Dataset: Experimental Networks of Physarum polycephalum

description: This dataset contains a large-scale collection of controlled laboratory experiments documenting transport network formation by the slime mold Physarum polycephalum. The organism is known for its ability to form efficient, adaptive networks for resource distribution, making it a widely used biological model for studying decentralized network formation.

All experiments were conducted under standardized conditions using square Petri dishes filled with non-nutritive agar. Nutrient sources (oat flakes) were placed at predefined spatial locations, representing network nodes. The plasmodium was introduced at a fixed starting position, and network development was recorded over time.

The dataset includes multiple spatial configurations with repeated trials, enabling analysis of both reproducible patterns and biological variability in network formation. For each experiment, the dataset provides raw and processed images of the resulting networks, as well as structured representations in the form of adjacency matrices, distance matrices, probability matrices, and aggregated network representations derived from repeated trials.

This dataset is intended to support research in biological network formation, bio-inspired engineering, graph theory, and data-driven modeling of transport systems. It can be used for comparative studies with classical geometric graphs, statistical analysis of network properties, and as training or evaluation data for computational and machine-learning models inspired by biological systems.
DOI: 10.5281/zenodo.18411398
title: PhysarumAI Dataset: Experimental Networks of Physarum polycephalum

description: This dataset contains a large-scale collection of controlled laboratory experiments documenting transport network formation by the slime mold Physarum polycephalum. The organism is known for its ability to form efficient, adaptive networks for resource distribution, making it a widely used biological model for studying decentralized network formation.

All experiments were conducted under standardized conditions using square Petri dishes filled with non-nutritive agar. Nutrient sources (oat flakes) were placed at predefined spatial locations, representing network nodes. The plasmodium was introduced at a fixed starting position, and network development was recorded over time.

The dataset includes multiple spatial configurations with repeated trials, enabling analysis of both reproducible patterns and biological variability in network formation. For each experiment, the dataset provides raw and processed images of the resulting networks, as well as structured representations in the form of adjacency matrices, distance matrices, probability matrices, and aggregated network representations derived from repeated trials.

This dataset is intended to support research in biological network formation, bio-inspired engineering, graph theory, and data-driven modeling of transport systems. It can be used for comparative studies with classical geometric graphs, statistical analysis of network properties, and as training or evaluation data for computational and machine-learning models inspired by biological systems.
DOI: 10.15468/dl.ttbn8u
title: Occurrence Download

description: A dataset containing 317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galphimia gracilis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 317 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004227-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ph3fhb
title: Occurrence Download

description: A dataset containing 342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gaudichaudia cynanchoides",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 342 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004230-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hevtjj
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteropterys purpurea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 68 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004234-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7xrtg
title: Occurrence Download

description: A dataset containing 53872 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-92.38533 -1.90398,-88.92991 -1.90398,-88.92991 0.68722,-92.38533 0.68722,-92.38533 -1.90398))",
 "HasGeospatialIssue is false",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 53872 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004193-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18446645
title: EARLY DETECTION OF IRON DEFICIENCY IN WOMEN OF CHILDREN
DOI: 10.5281/zenodo.18446644
title: EARLY DETECTION OF IRON DEFICIENCY IN WOMEN OF CHILDREN
DOI: 10.15468/dl.mrarz8
title: Occurrence Download

description: A dataset containing 590 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hiptage benghalensis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 590 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004237-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z8stnn
title: Occurrence Download

description: A dataset containing 6820 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Zerene cesonia"
 ]
}

 The dataset includes 6820 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004238-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.maq6d3
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ovophis zayuensis"
 ]
}

 The dataset includes 54 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004240-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.99d8rj
title: Occurrence Download

description: A dataset containing 16095 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Urbanus proteus"
 ]
}

 The dataset includes 16095 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004242-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8pyaa
title: Occurrence Download

description: A dataset containing 185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hiraea cuiabensis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 185 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004243-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18446655
title: DIAGNOSTIC AND PROGNOSTIC MARKERS OF LEUKEMIA DURING HEMATOLOGICAL ANALYZER EXAMINATION: LABORATORY ANALYSIS OF LEUKEMIA MARKERS
DOI: 10.5281/zenodo.18446656
title: DIAGNOSTIC AND PROGNOSTIC MARKERS OF LEUKEMIA DURING HEMATOLOGICAL ANALYZER EXAMINATION: LABORATORY ANALYSIS OF LEUKEMIA MARKERS
DOI: 10.15468/dl.p35wpf
title: Occurrence Download

description: A dataset containing 3117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (b6d09100-919d-4026-b35b-22be3dae7156, 4cd08c7c-fd56-48d0-ab05-aac38aa4457e)",
 "TaxonKey is Pyrisitia lisa"
 ]
}

 The dataset includes 3117 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004245-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.