cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.b5a5wm
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parapoynx crisonalis (Walker, 1859))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 297 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036204-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/t8jxdn
title: Urwitałt Station Biodiversity Database

description: The database aggegates biodiversity records from the scientific station of the Faculty of Biology of the University of Warsaw at Urwitałt, NE Poland. The station (currently Masurian Center for Biodiversity and Nature Education) was founded in 1974 by prof. Kazimierz Dobrowolski, serving as one of the main field research and academic facilities of the Faculty. 
The data comprise observation records collected during research and field courses on ecology, population and ecosystem biology conducted in Urwitałt during 45 years of activities.
DOI: 10.15468/dl.mqyuu7
title: Occurrence Download

description: A dataset containing 426 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parastrephia quadrangularis (Meyen) Cabrera"
 ]
}

 The dataset includes 426 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036206-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/czamdj
title: INC PAS Plants of Cemeteries of Southern Poland

description: Flora of vascular plants of cemeteries and their buffer areas in southern Poland. Data are from field records.
DOI: 10.15468/dl.9dtrhy
title: Occurrence Download

description: A dataset containing 1483 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Agardhiella subulata (C.Agardh) Kraft & M.J.Wynne)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1483 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036205-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10424291
title: Fractal OME-Zarr Test data for napari-ome-zarr-navigator

description: Test OME-Zarr data for https://github.com/fractal-analytics-platform/napari-ome-zarr-navigator

 

Contains a 2 HCS OME-Zarrs (2D & 3D) with 2 wells (B03, B05), each with 2 FOVs and the following AnnData tables for each well:



Condition table

Feature measurement table

2 ROI tables
DOI: 10.5281/zenodo.11262587
title: Fractal OME-Zarr Test data for napari-ome-zarr-navigator

description: Test OME-Zarr data for https://github.com/fractal-analytics-platform/napari-ome-zarr-navigator

 

Contains a 2 HCS OME-Zarrs (2D & 3D) with 2 wells (B03, B05), each with 2 FOVs and the following AnnData tables for each well:



Condition table

Feature measurement table

2 ROI tables
DOI: 10.15468/dl.tevfb3
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Glyceria fluitans (L.) R.Br."
 ]
}

 The dataset includes 292 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036207-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6qbs4d
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "Geometry POLYGON((-83.92255 10.86394,-83.14513 9.48808,-82.4544 9.64189,-83.57579 11.04292,-83.92255 10.86394))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dermochelys coriacea (Vandelli, 1761)"
 ]
}

 The dataset includes 66 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036209-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxjbax
title: Occurrence Download

description: A dataset containing 1312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parapoynx diminutalis Snellen, 1880)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1312 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036208-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11167945
title: WOLO: Wilson Only Looks Once – 3D scanned insects

description: WOLO: Wilson Only Looks Once – Estimating ant body mass from reference-free images using deep convolutional neural networks

Abstract

Size estimation is a hard computer vision problem with widespread applications in quality control in manufacturing and processing plants, livestock management, and studies on animal behaviour. Typically, image-based size estimation is facilitated by either well-controlled imaging conditions, the provision of global cues, or both. Reference-free size estimation is challenging, because objects of vastly different sizes can appear identical if they are of similar shape. Here, we attempt to implement automated and reference-free body size estimation to facilitate large-scale experimental work in a key model species in sociobiology: the leaf-cutter ants. Leaf-cutter ants are a suitable testbed for reference-free size-estimation, because their workers differ vastly in both size and shape; in principle, it is therefore possible to infer body mass, a proxy for size, from relative body proportions alone. Inspired by earlier work by E.O. Wilson, who trained himself to discern ant worker size from visual cues alone, we used various deep learning techniques to achieve the same feat automatically, quickly, and at scale from a single reference image: Wilson Only Looks Once (WOLO). Utilizing over 3 million hand-annotated and computer-generated images, a set of deep neural networks---including regressors, classifiers, and detectors---were trained to estimate the body mass of ants from image cut-outs. The WOLO networks approximately matched human performance, measured for a small group of both experts and non-experts, but were about 1000 times faster. Further refinement may enable accurate, high-throughput, and non-intrusive body mass estimation at scale, and so eventually contribute to a more nuanced and comprehensive understanding of the complex division of labour that characterises polymorphic insect societies.

3D Models

This repository contains the 20 3D scanned, retopologised, colour-corrected, and rigged models used to generate all data used in the original study. Refer to the manuscript for model generation and dataset generation details.

As the full-frame datasets are too large to host online permanently, please get in touch with the lead author (Fabian Plum) if you require access.
DOI: 10.5281/zenodo.11167946
title: WOLO: Wilson Only Looks Once – 3D scanned insects

description: WOLO: Wilson Only Looks Once – Estimating ant body mass from reference-free images using deep convolutional neural networks

Abstract

Size estimation is a hard computer vision problem with widespread applications in quality control in manufacturing and processing plants, livestock management, and studies on animal behaviour. Typically, image-based size estimation is facilitated by either well-controlled imaging conditions, the provision of global cues, or both. Reference-free size estimation is challenging, because objects of vastly different sizes can appear identical if they are of similar shape. Here, we attempt to implement automated and reference-free body size estimation to facilitate large-scale experimental work in a key model species in sociobiology: the leaf-cutter ants. Leaf-cutter ants are a suitable testbed for reference-free size-estimation, because their workers differ vastly in both size and shape; in principle, it is therefore possible to infer body mass, a proxy for size, from relative body proportions alone. Inspired by earlier work by E.O. Wilson, who trained himself to discern ant worker size from visual cues alone, we used various deep learning techniques to achieve the same feat automatically, quickly, and at scale from a single reference image: Wilson Only Looks Once (WOLO). Utilizing over 3 million hand-annotated and computer-generated images, a set of deep neural networks---including regressors, classifiers, and detectors---were trained to estimate the body mass of ants from image cut-outs. The WOLO networks approximately matched human performance, measured for a small group of both experts and non-experts, but were about 1000 times faster. Further refinement may enable accurate, high-throughput, and non-intrusive body mass estimation at scale, and so eventually contribute to a more nuanced and comprehensive understanding of the complex division of labour that characterises polymorphic insect societies.

3D Models

This repository contains the 20 3D scanned, retopologised, colour-corrected, and rigged models used to generate all data used in the original study. Refer to the manuscript for model generation and dataset generation details.

As the full-frame datasets are too large to host online permanently, please get in touch with the lead author (Fabian Plum) if you require access.
DOI: 10.34740/kaggle/dsv/8500991
title: start a business 2003 to 2019
DOI: 10.15468/dl.59xkj4
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Peru",
 "TaxonKey is Lycalopex culpaeus (Molina, 1782)"
 ]
}

 The dataset includes 124 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036210-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ng28sq
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sarconema scinaioides)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036211-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vvvhk2
title: Occurrence Download

description: A dataset containing 1070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pilocrocis ramentalis Lederer, 1863)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1070 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036212-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w3tufj
title: Occurrence Download

description: A dataset containing 68476 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vultur gryphus Linnaeus, 1758"
 ]
}

 The dataset includes 68476 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036127-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbwq89
title: Occurrence Download

description: A dataset containing 347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sarconema filiforme (Sonder) Kylin, 1932)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 347 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036213-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57934/0b01e410801f31bb
title: Nationaliteitskenmerken van alle in de Gemeentelijke Basisadministratie Persoonsgegevens (GBA) ingeschreven personen niet-gecoördineerd
DOI: 10.15468/dl.4683ys
title: Occurrence Download

description: A dataset containing 69594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((4.788900777540278 52.353849297258826, 4.788502278508079 52.35647934894357, 4.787273338024734 52.35901124954485, 4.785261062249134 52.361347676144895, 4.782542699967055 52.363398805829064, 4.779222686444145 52.36508577291141, 4.775428634603401 52.366343706082745, 4.771306426882623 52.367124227792594, 4.7670145970020945 52.367397318838066, 4.762718219383373 52.36715247567061, 4.758582543823471 52.36639911538416, 4.754766623336631 52.36516621261666, 4.751417183352686 52.3635011825021, 4.748662970693711 52.361468053144804, 4.746609801390429 52.35914499866857, 4.7453364983322315 52.35662132861754, 4.744891874234269 52.35399405038074, 4.745292874017451 52.35136413757611, 4.74652394520863 52.34883264835632, 4.748537657267997 52.34649684301001, 4.751256542748555 52.34444644987158, 4.754576086732353 52.3427602224946, 4.758368747779369 52.3415029195748, 4.762488855187507 52.34072282271255, 4.766778194990076 52.34044988643154, 4.771072071857405 52.34069459071887, 4.775205616709297 52.34144753962381, 4.779020100912529 52.342679821137516, 4.782369017698394 52.34434411470631, 4.785123699896894 52.34637650435827, 4.78717825999408 52.348698928583005, 4.788453663364757 52.35122217378649, 4.788900777540278 52.353849297258826))",
 "Year is one of (2019, 2020, 2021, 2022, 2023, 2024, 2025)",
 "KingdomKey is one of (Animalia, Fungi, Plantae)"
 ]
}

 The dataset includes 69594 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001338-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57934/0b01e410801f3364
title: Waardeketens: Onderzoeksresultaten waardeketens en verplaatsingen van activiteiten door bedrijven.
DOI: 10.15468/dl.79662f
title: Occurrence Download

description: A dataset containing 211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Batrachoseps robustus Wake, Yanev & Hansen, 2002)"
 ]
}

 The dataset includes 211 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001345-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/c5c-knj-qqd
title: Rhyacia simulans Hufnagel, 1766

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/t1z-y1a-6nm
title: Conistra (Conistra) vaccinii (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/xrl-ely-ffk
title: Oligia latruncula ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/jd5-7x0-f5h
title: Xestia (Pachnobia) speciosa Hübner, 1813

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/xb0-st9-mlb
title: Evergestis Hübner, 1825

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ewz-pww-jt2
title: Borkhausenia fusescens (Haworth, 1828)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v32-pxk-mtf
title: Coenophila subrosea var. subcaerulea (Staudinger, 1871)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/e9q-4w1-llk
title: Mythimna (Mythimna) pallens Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/yre-avl-bxw
title: Autographa jota (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/1nd-a2f-jbt
title: Vanessa cardui (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/7lp-rle-93b
title: Vanessa cardui (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/sph-t2p-7k8
title: Schrankia costaestrigalis (Stephens, 1834)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/dsp-7tq-zd8
title: Thyatira batis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/tyy-bez-9ky
title: Brachylomia viminalis Fabricius, 1777

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/pcg-m1j-dnf
title: Caradrina (Paradrina) selini Boisduval, 1840

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/d77-0td-s5z
title: Diarsia mendica Fabricius, 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/g9m-v77-vnh
title: Diarsia mendica Fabricius, 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/40w-np6-sfz
title: Boloria aquilonaris (Stichel, 1908)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/crd-59z-1k1
title: Apamea (Apamea) lateritia (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/cw3-9t2-5sm
title: Oligia latruncula ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/wj9-x4q-ja7
title: Oligia latruncula ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/zmz-4pw-68s
title: Conistra (Conistra) vaccinii (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nmm-txp-ql4
title: Orthosia (Semiophora) Stephens, 1829

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/pna-x62-3se
title: Xylena (Lithomoia) solidaginis Hübner, 1803

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ss8-m8h-lvh
title: Thyatira batis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/8kp-ekj-4kr
title: Oligia latruncula ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/yra-f1v-pjz
title: Thyatira batis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/bhc-cnf-1v2
title: Achlya flavicornis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v4a-1x3-jph
title: Thyatira batis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/9ca-y24-kk0
title: Diarsia mendica Fabricius, 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/19p-jgj-927
title: Evergestis Hübner, 1825

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/wn6-mse-asy
title: Autographa jota (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/56j-2kk-myt
title: Apamea (Apamea) lateritia (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/mnl-9vf-4dn
title: Oligia latruncula ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/bxb-b3v-rm2
title: Conistra (Conistra) vaccinii (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/exs-z8p-7t1
title: Evergestis Hübner, 1825

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.pcrwz7
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((101.27511 4.51472,143.72489 4.51472,143.72489 21.48528,101.27511 21.48528,101.27511 4.51472))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyrtodactylus philippinicus"
 ]
}

 The dataset's 2 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035041-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/d81-qlf-fd2
title: Diarsia mendica Fabricius, 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/th1-pca-lal
title: Schrankia costaestrigalis (Stephens, 1834)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nnv-nn3-37h
title: Diarsia florida Schmidt, 1859

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/afc-4q8-4zp
title: Vanessa cardui (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/xbf-hfz-5h5
title: Agriphila straminella [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/kay-mhv-wfa
title: Vanessa cardui (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nm1-pry-k2d
title: Xestia (Pachnobia) alpicola Zetterstedt, 1840

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/zsj-g4w-mz3
title: Amphipyra (Amphipyra) perflua (Fabricius, 1787)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/cf2-cc1-g9v
title: Xestia (Pachnobia) speciosa Hübner, 1813

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/m9q-any-mlz
title: Metaxmeste Hübner, 1825

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/q3f-hfb-7kv
title: Pyralis lienigialis Zeller, 1843

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.