cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7155443
title: Additional file 5: of Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus

description: Concatenated multi-locus sequence alignment used in Maximum Likelihood phylogenetic tree. (FASTA 184 kb)
DOI: 10.7284/104520
title: TSG (Thermosalinograph) data collected during research cruise WS1016 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155443.v1
title: Additional file 5: of Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus

description: Concatenated multi-locus sequence alignment used in Maximum Likelihood phylogenetic tree. (FASTA 184 kb)
DOI: 10.6084/m9.figshare.7155446
title: Additional file 6: of Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus

description: Alignment of the full-length sequences of the polyketide synthases (PKSs) from distinct Fusarium species. (FASTA 1114 kb)
DOI: 10.6084/m9.figshare.7155446.v1
title: Additional file 6: of Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus

description: Alignment of the full-length sequences of the polyketide synthases (PKSs) from distinct Fusarium species. (FASTA 1114 kb)
DOI: 10.7284/104314
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1017 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith
DOI: 10.6084/m9.figshare.7155437
title: Additional file 3: of Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus

description: Table S3. Functional categorization of the Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus non-redundant unigenes Table S4. Metabolomic pathways network. Table S5. OrthoMCL-defined protein families shared between some Ascomycota species. Table S6. Expression profile matrix. Table S7. pH-responsive genes identified in Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus. Table S8. pH-responsive genes from Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus involved in specific matabolic pathways. Table S9. pH-responsive genes from Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus with significant similarity (e-value 10-05) to those genes/proteins previosly reported in PHI-base (pathogen-host interaction database). Tabla S10. Non-redundnat unigenes from Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus involved in the tricarboxylic acid cycle (oxaloacetate biosynthetic pathway). Table S11. Genes involved in fusaric acid (FA) biosynthesis. Table S12. Primers used in RT-qPCR assays. (XLSX 14848 kb)
DOI: 10.6084/m9.figshare.7155434
title: Additional file 2: of Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus

description: The nucleotide sequence of the non-redundant unigenes from Fusarium sp. (ZIP 20501 kb)
DOI: 10.7284/104315
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1017 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith
DOI: 10.6084/m9.figshare.7155434.v1
title: Additional file 2: of Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus

description: The nucleotide sequence of the non-redundant unigenes from Fusarium sp. (ZIP 20501 kb)
DOI: 10.6084/m9.figshare.7155437.v1
title: Additional file 3: of Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus

description: Table S3. Functional categorization of the Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus non-redundant unigenes Table S4. Metabolomic pathways network. Table S5. OrthoMCL-defined protein families shared between some Ascomycota species. Table S6. Expression profile matrix. Table S7. pH-responsive genes identified in Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus. Table S8. pH-responsive genes from Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus involved in specific matabolic pathways. Table S9. pH-responsive genes from Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus with significant similarity (e-value 10-05) to those genes/proteins previosly reported in PHI-base (pathogen-host interaction database). Tabla S10. Non-redundnat unigenes from Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus involved in the tricarboxylic acid cycle (oxaloacetate biosynthetic pathway). Table S11. Genes involved in fusaric acid (FA) biosynthesis. Table S12. Primers used in RT-qPCR assays. (XLSX 14848 kb)
DOI: 10.6084/m9.figshare.7155428
title: Additional file 1: of Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus

description: Table S1. Summary of sequencing data generated from Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus. Table S2. Annotation of Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus no-redundant unigenes. (XLSX 25088 kb)
DOI: 10.6084/m9.figshare.7155428.v1
title: Additional file 1: of Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus

description: Table S1. Summary of sequencing data generated from Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus. Table S2. Annotation of Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus no-redundant unigenes. (XLSX 25088 kb)
DOI: 10.6084/m9.figshare.7155416
title: MOESM5 of The relationship between the abundance of the Nigeria-Cameroon chimpanzee (Pan troglodytes ellioti) and its habitat: a conservation concern in Mbam-Djerem National Park, Cameroon

description: Additional file 5. Data used for the GĂŠneral Linear Model. Data were extracted from the CyberTracker database.
DOI: 10.6084/m9.figshare.7155416.v1
title: MOESM5 of The relationship between the abundance of the Nigeria-Cameroon chimpanzee (Pan troglodytes ellioti) and its habitat: a conservation concern in Mbam-Djerem National Park, Cameroon

description: Additional file 5. Data used for the GĂŠneral Linear Model. Data were extracted from the CyberTracker database.
DOI: 10.7284/104312
title: INS (Inertial Navigation System) data collected during research cruise WS1017 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104325
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1018 using a RDI BB-600 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155401
title: MOESM3 of The relationship between the abundance of the Nigeria-Cameroon chimpanzee (Pan troglodytes ellioti) and its habitat: a conservation concern in Mbam-Djerem National Park, Cameroon

description: Additional file 3. Some plant species found in chimpanzees nests. Plant were identified following a botanist, Garoua wildlife College herbarium and scientific names were checked using ( http://www.theplantlist.org/ ).
DOI: 10.6084/m9.figshare.7155401.v1
title: MOESM3 of The relationship between the abundance of the Nigeria-Cameroon chimpanzee (Pan troglodytes ellioti) and its habitat: a conservation concern in Mbam-Djerem National Park, Cameroon

description: Additional file 3. Some plant species found in chimpanzees nests. Plant were identified following a botanist, Garoua wildlife College herbarium and scientific names were checked using ( http://www.theplantlist.org/ ).
DOI: 10.7284/104326
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1018 using a RDI OS-75 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155395
title: MOESM9 of An expanded global inventory of allelic variation in the most extremely polymorphic region of Plasmodium falciparum merozoite surface protein 1 provided by short read sequence data

description: Additional file 9. Translated amino acid sequences of each of the 1522 assembled allelic sequences of msp1 block 2.
DOI: 10.6084/m9.figshare.7155392
title: MOESM2 of The relationship between the abundance of the Nigeria-Cameroon chimpanzee (Pan troglodytes ellioti) and its habitat: a conservation concern in Mbam-Djerem National Park, Cameroon

description: Additional file 2. Data used to perfomed density analysis. Data were extracted from the CyberTracker database.
DOI: 10.6084/m9.figshare.7155395.v1
title: MOESM9 of An expanded global inventory of allelic variation in the most extremely polymorphic region of Plasmodium falciparum merozoite surface protein 1 provided by short read sequence data

description: Additional file 9. Translated amino acid sequences of each of the 1522 assembled allelic sequences of msp1 block 2.
DOI: 10.6084/m9.figshare.7155392.v1
title: MOESM2 of The relationship between the abundance of the Nigeria-Cameroon chimpanzee (Pan troglodytes ellioti) and its habitat: a conservation concern in Mbam-Djerem National Park, Cameroon

description: Additional file 2. Data used to perfomed density analysis. Data were extracted from the CyberTracker database.
DOI: 10.7284/104324
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise WS1018 using a Sea-Bird SBE-911+ instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155383
title: Additional file 6 of Biotite: a unifying open source computational biology framework in Python

description: Biotite repository snapshot. This archive contains a snapshot of the Biotite repository at version 0.7.0. (7Z 6668 KB)
DOI: 10.7284/104327
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1018 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155383.v1
title: Additional file 6 of Biotite: a unifying open source computational biology framework in Python

description: Biotite repository snapshot. This archive contains a snapshot of the Biotite repository at version 0.7.0. (7Z 6668 KB)
DOI: 10.7284/104328
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1018 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104329
title: Gyrocompass data collected during research cruise WS1018 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/104323
title: INS (Inertial Navigation System) data collected during research cruise WS1018 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155359
title: Additional file 1: of Impact of ZBTB7A hypomethylation and expression patterns on treatment response to hydroxyurea

description: Table S1. Hematological data of HU responders (R) and HU non-responders (NR) used as in vivo samples. Figure S1 In vivo HbF levels and γ-globin expression in vitro before and after HU treatment. (a) III NR2 and (b) III NR4 patients (Table 2) at baseline of HbF expression before HU treatment (c) III NR2, (d)III NR4 and (e) III R5 patients at the plateau phase, with maximum detected HbF expression levels. Arrows show the HbF curve. (f) γ-globin gene expression in BFU-E colonies calculated as relative expression of treated compared to untreated with HU colonies, using the formula 2(-ΔCt) and normalized to the reference GAPDH gene. Figure S2 DNA methylation levels estimated by the pyrosequencing CpG assay. Typical pyrograms displaying DNA methylation analyses before and after cells’ treatment with HU of: (a) ZBTB7A CpG 326, (b) GATA2 CpG 515, (c) KLF1 CpG 98, (d) SIN3A CpG 401, (e) BCL11A CpG 115. Figure S3 DNA methylation levels less than 10% either with or without the addition of HU, estimated using the pyrosequencing CpG assay. Typical pyrograms displaying DNA methylation levels of (a) BCL11A CpG 120, and (b) MYB CpG 216. (ZIP 3179 kb)
DOI: 10.6084/m9.figshare.7155359.v1
title: Additional file 1: of Impact of ZBTB7A hypomethylation and expression patterns on treatment response to hydroxyurea

description: Table S1. Hematological data of HU responders (R) and HU non-responders (NR) used as in vivo samples. Figure S1 In vivo HbF levels and γ-globin expression in vitro before and after HU treatment. (a) III NR2 and (b) III NR4 patients (Table 2) at baseline of HbF expression before HU treatment (c) III NR2, (d)III NR4 and (e) III R5 patients at the plateau phase, with maximum detected HbF expression levels. Arrows show the HbF curve. (f) γ-globin gene expression in BFU-E colonies calculated as relative expression of treated compared to untreated with HU colonies, using the formula 2(-ΔCt) and normalized to the reference GAPDH gene. Figure S2 DNA methylation levels estimated by the pyrosequencing CpG assay. Typical pyrograms displaying DNA methylation analyses before and after cells’ treatment with HU of: (a) ZBTB7A CpG 326, (b) GATA2 CpG 515, (c) KLF1 CpG 98, (d) SIN3A CpG 401, (e) BCL11A CpG 115. Figure S3 DNA methylation levels less than 10% either with or without the addition of HU, estimated using the pyrosequencing CpG assay. Typical pyrograms displaying DNA methylation levels of (a) BCL11A CpG 120, and (b) MYB CpG 216. (ZIP 3179 kb)
DOI: 10.7284/104330
title: Radiometer data collected during research cruise WS1018 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155347
title: MOESM2 of An expanded global inventory of allelic variation in the most extremely polymorphic region of Plasmodium falciparum merozoite surface protein 1 provided by short read sequence data

description: Additional file 2. DNA sequences from GenBank used as a starting point to generate the P. falciparum msp1 block 2 reference library.
DOI: 10.7284/104331
title: Radiometer data collected during research cruise WS1018 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155347.v1
title: MOESM2 of An expanded global inventory of allelic variation in the most extremely polymorphic region of Plasmodium falciparum merozoite surface protein 1 provided by short read sequence data

description: Additional file 2. DNA sequences from GenBank used as a starting point to generate the P. falciparum msp1 block 2 reference library.
DOI: 10.7284/104335
title: Radiometer data collected during research cruise WS1018 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155341
title: Additional file 5: of Modeling tuberculosis dynamics with the presence of hyper-susceptible individuals for Ho Chi Minh City from 1996 to 2015

description: This is the AIDS data set used in this paper. (CSV 274 bytes)
DOI: 10.6084/m9.figshare.7155341.v1
title: Additional file 5: of Modeling tuberculosis dynamics with the presence of hyper-susceptible individuals for Ho Chi Minh City from 1996 to 2015

description: This is the AIDS data set used in this paper. (CSV 274 bytes)
DOI: 10.7284/104334
title: Rain Gauge data collected during research cruise WS1018 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155329
title: Additional file 4: of Modeling tuberculosis dynamics with the presence of hyper-susceptible individuals for Ho Chi Minh City from 1996 to 2015

description: This is data set D3 of this paper. (CSV 372 bytes)
DOI: 10.6084/m9.figshare.7155329.v1
title: Additional file 4: of Modeling tuberculosis dynamics with the presence of hyper-susceptible individuals for Ho Chi Minh City from 1996 to 2015

description: This is data set D3 of this paper. (CSV 372 bytes)
DOI: 10.7284/104336
title: Singlebeam Echosounder data collected during research cruise WS1018 using a Knudsen 320B/P instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155323
title: Additional file 1 of Biotite: a unifying open source computational biology framework in Python

description: Biotite documentation. This archive contains the HTML documentation of Biotite 0.7.0. The default entry point is index.html. (7Z 3453 KB)
DOI: 10.6084/m9.figshare.7155323.v1
title: Additional file 1 of Biotite: a unifying open source computational biology framework in Python

description: Biotite documentation. This archive contains the HTML documentation of Biotite 0.7.0. The default entry point is index.html. (7Z 3453 KB)
DOI: 10.6084/m9.figshare.7155317
title: Additional file 2: of Modeling tuberculosis dynamics with the presence of hyper-susceptible individuals for Ho Chi Minh City from 1996 to 2015

description: This is data set D1 of this paper. (CSV 548 bytes)
DOI: 10.6084/m9.figshare.7155317.v1
title: Additional file 2: of Modeling tuberculosis dynamics with the presence of hyper-susceptible individuals for Ho Chi Minh City from 1996 to 2015

description: This is data set D1 of this paper. (CSV 548 bytes)
DOI: 10.6084/m9.figshare.7155320
title: Additional file 3: of Modeling tuberculosis dynamics with the presence of hyper-susceptible individuals for Ho Chi Minh City from 1996 to 2015

description: This is data set D2 of this paper. (CSV 30 bytes)
DOI: 10.7284/104332
title: Water Temperature data collected during research cruise WS1018 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155320.v1
title: Additional file 3: of Modeling tuberculosis dynamics with the presence of hyper-susceptible individuals for Ho Chi Minh City from 1996 to 2015

description: This is data set D2 of this paper. (CSV 30 bytes)
DOI: 10.7284/104333
title: TSG (Thermosalinograph) data collected during research cruise WS1018 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155305
title: Additional file 7: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density

description: Summary of skin gene module enrichment: Summary of gene ontology (GO) term enrichment of skin gene co-expression modules defined by WGCNA, including total number of genes per module, most significant GO term, and major biological process clusters determined using ReViGO. Significant correlations with infection status, density treatment, time point, and fish standard length indicated (+; positive correlation, â ; negative correlation). (XLSX 2803 kb)
DOI: 10.6084/m9.figshare.7155308
title: Additional file 8: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density

description: Summary of gill gene module enrichment: Summary of gene ontology (GO) term enrichment of gill gene co-expression modules defined by WGCNA, including total number of genes per module, most significant GO term, and major biological process clusters determined using ReViGO. Significant correlations with infection status, density treatment, time point, and fish standard length indicated (+; positive correlation, â ; negative correlation). (XLSX 5834 kb)
DOI: 10.7284/104337
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1101 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155305.v1
title: Additional file 7: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density

description: Summary of skin gene module enrichment: Summary of gene ontology (GO) term enrichment of skin gene co-expression modules defined by WGCNA, including total number of genes per module, most significant GO term, and major biological process clusters determined using ReViGO. Significant correlations with infection status, density treatment, time point, and fish standard length indicated (+; positive correlation, â ; negative correlation). (XLSX 2803 kb)
DOI: 10.6084/m9.figshare.7155308.v1
title: Additional file 8: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density

description: Summary of gill gene module enrichment: Summary of gene ontology (GO) term enrichment of gill gene co-expression modules defined by WGCNA, including total number of genes per module, most significant GO term, and major biological process clusters determined using ReViGO. Significant correlations with infection status, density treatment, time point, and fish standard length indicated (+; positive correlation, â ; negative correlation). (XLSX 5834 kb)
DOI: 10.7284/104338
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1101 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7155299
title: Additional file 6: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density

description: Summary of gill gene ontology enrichment: Summary of gene ontology (GO) term enrichment of gill genes differentially expressed between control (uninfected) and Saprolegnia-infected Oreochromis niloticus density treatment groups (LD; low density, HD; high density), including total number of differentially expressed genes, most significant GO term, major biological process clusters determined using ReViGO. â denotes increased expression in infected fish and â denotes decreased expression. (XLSX 2288 kb)
DOI: 10.6084/m9.figshare.7155299.v1
title: Additional file 6: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density

description: Summary of gill gene ontology enrichment: Summary of gene ontology (GO) term enrichment of gill genes differentially expressed between control (uninfected) and Saprolegnia-infected Oreochromis niloticus density treatment groups (LD; low density, HD; high density), including total number of differentially expressed genes, most significant GO term, major biological process clusters determined using ReViGO. â denotes increased expression in infected fish and â denotes decreased expression. (XLSX 2288 kb)
DOI: 10.7284/104339
title: Gyrocompass data collected during research cruise WS1101 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition