cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17882/96701
title: Depth-migrated High Resolution seismic reflection profiles and interval velocity models in the western Black Sea

description: This seismic data set was recorded in September 2015 on board the R/V Pourquoi Pas? during the GHASS cruise (IFREMER) on the western Black Sea, offshore Romania. The available profiles (part of the collected data) within this deposit are located on the continental slope, bathymetry between 500 to 1200 meters. The pre-processing of the seismic data included common midpoint binning @6.25 meters, trace and shot edition, source delay correction, and a 35-375 Hz band pass filtering. Detailed Root Mean Square Velocity analyses were performed on semblance panels computed using super gathers every 150 m. Normal Move Out time correction was then applied on the Common Mid Point (CMP) using these velocities prior to stack. Interval velocities were computed using the Dix equation. The velocity model was then interpolated every CMP location, converted to depth and smoothed to perform post-stack depth migration. The depth migrated sections and the depth velocity models have been output to standard SEG-Y rev1 format (https://library.seg.org/pb-assets/technical-standards/seg_y_rev1-1686080991247.pdf) with values written using “big-endian” byte ordering and IEEE floating-point. For a given profile, both SEGY files have the same number of traces and the same bin locations. Velocity unit is in meter.second-1. The depth sampling is set to 0.5 meter for both files. The recording delay is zero for the depth migration SEGY files. The delay is coded in meters and constant for a given depth velocity SEGY file, stored within the Trace Header (bytes 109-110). Trace coordinates are also stored within the Trace Header using WGS84 +DDDMMSS.ss format with a scale factor of -100 (bytes 81-88, which means that the value has to divided by 100) . For more convenient access to the location of the profiles, these coordinates are also stored into ASCII files using decimal degrees.
DOI: 10.18150/8vev26
title: Dataset from Twin-Otter flight number 336 from the EUREC4A-ATOMIC campaign

description: Dataset from the Twin-Otter flight number 336 from the EUREC4A-ATOMIC campaign, that is used in the research publication titled: “Can recurrence quantification analysis be useful in the interpretation of airborne atmospheric time series”. The files contain data on wind velocity, temperature, pressure, and plane GPS data, as well as microphysical properties (droplet size distribution) of air.The data is in the NetCDF file format, commonly used in atmospheric sciences. Software required to view and open the data is implemented in the form of toolboxes in major programming languages, as well as some UNIX applications such as ncview. An example list is given under the following link: https://en.wikipedia.org/wiki/NetCDF#Applications.
DOI: 10.25326/429
title: LIAISE_ELS-PLANS_UKMO_radiosondes_L1

description: This dataset contains 

Vertical characteristics: 

Height 

Pressure 

Air temperature 

Relative humidity 

Dewpoint temperature 

Water vapor mixing ratio 

Wind direction and wind speed 

Latitude and longitude of radiosonde 

Range and azimuth 

These measurements began at Els Plans, Spain (41.590111N, 1.029363 W, 334m) using RS92-SGP radiosondes. An intensive observation period was observed between 20210714 and 20210727. The data were processed using the onboard radiosonde software, and do not contain quality flags. Data were checked during launches. 

Data are 1hz. 

Altitude 334m  (at launch site)

Latitude 41.590111 (at launch site)

Longitude 1.029363 (at launch site)
DOI: 10.5066/p9nmqx70
title: Snow Depth and Snow Water Equivalents at Sleepers River Research Watershed, Danville, Vermont

description: Snow depth and snow water equivalent (SWE) measurements have been made at Sleepers River Research Watershed starting in 1960. Initial snowpack measurements were made by the Agricultural Research Service joined by the National Weather Service in 1966. Cold Regions Research and Engineering Laboratory started measuring the snowpack in 1979, followed by the U.S. Geological Survey from 1993 to the present. Measurements started at 2 sites, increased to 13 sites in the 1980s and currently includes 9 sites. Sites range in elevation from 200 to 670 meters and are in a mix of fields and small openings in forests. Snow measurements are made with a fiberglass Adirondack snow tube with aluminum teeth at the tip, tapered slightly inward to retain the core. Five measurements of snow depth and SWE are taken at each site each week and averaged to derive the weekly value we report. This data release includes two tables: Snow course description lists elevation, latitude, longitude, aspect, vegetation, and years of data collection for each site. Sleepers snow 1960-2019 datarelease includes all the average snow depth and SWE values.
DOI: 10.5067/modis/myd05_l2.061
title: MYD05_L2 MODIS/Aqua Total Precipitable Water Vapor 5-Min L2 Swath 1km and 5km
DOI: 10.5281/zenodo.10278394
title: Viscosity Measurements at High Pressures: A Critical Appraisal of Corrections to Stokes' Law

description: Included are central data and codes for the manuscript "Viscosity Measurements at High Pressures: A Critical Appraisal of Corrections to Stokes' Law", submitted for review.
DOI: 10.5281/zenodo.10479736
title: Quad Resolution GAMERA Global MHD: April 2023 storm, sub-alfvenic interval

description: Grid Agnostic MHD for Extended Research Applications (GAMERA) global terrestrial magnetohydrodynamic simulation outputs at 1-minute resolution covering the timespan 10:00-15:30 UT on Apr 24, 2023. Files contain grid information and MHD variables. Variable names can be read as h5 attributes.
DOI: 10.5281/zenodo.10514223
title: Stochastic Modelling of Thin Mud Drapes inside Point Bar Reservoirs with ALLUVSIM-GANSim

description: Here is the dataset and code for the paper by Hu, X et al. (2023, under review). Stochastic Modelling of Thin Mud Drapes inside Point Bar Reservoirs with ALLUVSIM-GANSim, Water Resources Research.
DOI: 10.5281/zenodo.10537175
title: Data from comparing the relative importance of microbial residue production versus mineral preservation in MAOC dynamics over long timescales

description: The accrual of mineral-associated organic carbon (MAOC) is one of the key mechanisms promoting the long-term sequestration of atmospheric CO2 into soil organic carbon (SOC). Both microbial residue production and mineral preservation are vital for MAOC accumulation. However, their relative importance and interactive effects remain unclear, hampering our ability to understand how to effectively increase this important pool of persistent SOC. Here by analyzing MAOC content and composition in tandem with soil mineral and microbial attributes along a weathering gradient on a volcanic soil sequence (290 years to 2.1 million years ago), we find that MAOC content increases with increasing weathering states, accompanied by increasing microbial contribution to MAOC. In contrast to short-term studies where microbial residue production predominantly influences MAOC accumulation, weathering-enhanced mineral preservation capacity overrides microbial residue production in governing MAOC accumulation in the long term by increasing reactive minerals. Furthermore, mineral attributes have a strong interactive effect with microbial traits on MAOC accumulation and composition, likely by enhancing the accumulation efficiency of microbial residues via affecting the microbial community composition. Our findings highlight mineral weathering may effectively boost persistent SOC pools in synergy with microbial conversion.
description: Here is a dataset for the research anout comparing the relative importance of microbial residue production versus mineral preservation in MAOC dynamics over long timescales.
DOI: 10.5281/zenodo.10627720
title: Supplemental data files for: A potential mode of the lithospheric growth and delamination of orogenic belts: Evidence from high-resolution magnetotelluric data

description: Data files for a 2-D electrical resistivity model in the Greater Xing'an Range, including the observed MT data, the data fitting, the preferred resistivity model, and the raw data in impedance format.
DOI: 10.5281/zenodo.10628753
title: An activity-specificity trade-off encoded in human transcription factors

description: Data repository for the publication "An activity-specificity trade-off encoded in human transcription factors". 

Imaging datasets with larger sizes can be downloaded here: https://owww.molgen.mpg.de/~TFsuboptimization/
DOI: 10.5281/zenodo.10708976
title: Quantifying Human Contributions to Near-Surface Temperature Inversions: Insights from COVID-19 Natural Experiments

description: These are the processed data and code used to generate our analysis in the article: 



Zhang, Z., Wang, J., & Ge, Y. (2024). Quantifying Human Contributions to Near-Surface Temperature Inversions: Insights From COVID-19 Natural Experiments. Geophysical Research Letters, 51(6), e2023GL107964. https://doi.org/10.1029/2023GL107964


If you have any question about our data or code used in the analysis, please contact us at zhangzy.20b@igsnrr.ac.cn
DOI: 10.5281/zenodo.10800910
title: Zhengzhou event data

description: Gridded S-band dual-polarization radar observations for the Zhengzhou July 20 2021 event as well as model simulations. The format of gridded radar data is in '*.mat', while the model outputs are in '.nc'.
DOI: 10.5281/zenodo.11218757
title: Dataset used to assess the vulnerability of chondrichthyan fishes of the Eastern Tropical Pacific to climate change

description: Information and data on ETP chondrichthyan species distribution, life history, ecology, and physiology were gathered from the IUCN Red List, FishBase, published literature, unpublished data/grey literature, and expderts advice.
DOI: 10.5281/zenodo.4017719
title: X-ray light-field - Gel bubbles - 1 deg angular range

description: X-ray light-field of bubbles in hair gel, taken with the FleX-ray scanner, in the Computational Imaging group of CWI (Amsterdam). Angular range is ~1 degree, panel pixel size ~150 um. This bundle includes: <pre><code>light-field_corrected.vox</code></pre> Light-field in the VOX v0 data format (based on HDF5). Any HDF5 reader can open it. Native support is available here: https://github.com/cicwi/plenoptomos. The image floating point precision is FP32. The images have been back-ground subtracted. <pre><code>light-field_acquisition_rawdata.tbz </code></pre> Light-field acquisition raw data, archived with Tar and Bzip2. It contains TIF images as projections, dark-field and flat-field. The ini and txt files provide information about the scan (motor positions, etc). <pre><code>tomo_acquisition_rawdata.tbz</code></pre> Tomographic acquisition raw data, archived with Tar and Bzip2. It contains TIF images as projections, dark-field and flat-field. The ini and txt files provide information about the scan (motor positions, angles, etc). <pre><code>tomo_reconstruction_and_segmentation.h5</code></pre> Tomographic reconstruction of the raw data, in HDF5. Any HDF5 reader can open it. It contains two self-descriptive datasets: "volume" and "segmentation".
DOI: 10.5281/zenodo.6958544
title: Disturbances in vegetation detected with BFAST in the Purapel fluvial catchment

description: This dataset contains the results (69 TIFF files) of seasonal disturbances detected in vegetation in the Purapel catchment (southern Chile) for the period from 2002 to 2019. These disturbances were obtained by applying the Breaks for Additive Season and Trend (BFAST, Verbesselt et al., 2010) algorithm to 745 Landsat 5, 7 and 8 imagery. We used Collection 2 Level 2 surface reflectance products and applied the CFMask algorithm (Foga et al., 2017) for cloud masking before utilizing the BFAST algorithm. The BFAST algorithm detects changes in the NDVI time series of each pixel. To determine which event was considered a disturbance, we used the same intensity thresholds as in Cabezas and Fassnacht (2018). We then filtered the results to keep just the disturbances with areas greater than 1 hectare, eliminating noisy data. Except for 2 big wildfires (2015 and 2017) it was assumed that all of the disturbances were clear cuts, since forestry is the main productive activity in the region. This was confirmed by validating the data with 35 manually drawn polygons that were randomly distributed across the catchment. Then, we performed an accuracy assessment, obtaining a confusion matrix with a balanced accuracy of 0,86 and a F1 score of 0,69. Each TIFF file is a binary grid with “zeros” representing no disturbance and “ones” representing a disturbance in the season that the name of the file indicates. A GIF file is also included, which contains the time series of the disturbances for easier graphical purposes. References J. Cabezas and F. E. Fassnacht. Reconstructing the Vegetation Disturbance History of a Biodiversity Hotspot in Central Chile Using Landsat, Bfast and Landtrendr. In IGARSS 2018 - 2018 IEEE International Geoscience and Remote Sensing Symposium, pages 7636–7639. IEEE, 7 2018. ISBN 978-1-5386-7150-4. doi: 10.1109/IGARSS.2018.8518863. S. Foga, P. L. Scaramuzza, S. Guo, Z. Zhu, R. D. Dilley, T. Beckmann, G. L. Schmidt, J. L. Dwyer, M. Joseph Hughes, and B. Laue. Cloud detection algorithm comparison and validation for operational Landsat data products. Remote Sensing of Environment, 194:379–390, 6 2017. ISSN 00344257. doi: 10.1016/j.rse.2017.03.026. J. Verbesselt, R. Hyndman, G. Newnham, and D. Culvenor. Detecting trend and seasonal changes in satellite image time series. Remote Sensing of Environment, 114(1):106–115, 1 2010. ISSN 00344257. doi: 10.1016/ j.rse.2009.08.014. URL http://linkinghub.elsevier.com/retrieve/pii/S003442570900265X.
description: Dataset funded by ANID (FONDECYT project 11190864, FONDAP project 15110009) and the UFRO Postdoc grant VRIP20P001
DOI: 10.5281/zenodo.8411801
title: Ultrasonic experimental results of hcp-Fe at high pressure and high temperature

description: The sound velocities and lattice parameters of hcp-Fe at high pressure and high temperature conditions in the paper "Reassessment of Birch’s Law on hcp-Fe from ultrasonic sound velocity measurement and implications on the velocity profiles of Earth’s inner core" submitted to Journal of Geophysical Research Solid Earth.
DOI: 10.5441/002/edbt.2016.44
title: Data Wrangling for Big Data: Challenges and Opportunities
DOI: 10.5517/cc869c3
title: CCDC 244384: Experimental Crystal Structure Determination

description: Related Article: Zhi-Liang Liu, Ye Song, Chun-fang Du|2012|Chem.Res.Chin.Univ.|28|1066|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5525/gla.researchdata.1092
title: Investigation of MoOx/Al2O3 under Cyclic Operation for Oxidative and Non-Oxidative Dehydrogenation of Propane
DOI: 10.6073/pasta/66320ff8063706f6b3ee83a0ef3ef439
title: Wisconsin Lake Historical Limnological Parameters 1925 - 2009

description: This dataset is a compilation of ten sources of data representing physical and chemical properties of 13,093 Wisconsin lakes. The goal was to compile a comprehensive resource of historical and more recent lake information which would be accessible by querying a single database. Due to the wide temporal extent (1925-2009), methods used for measuring lake parameters in this dataset have varied. A careful look at the available metadata and background information is recommended. Sampling Frequency: varies Number of sites: 13,093
DOI: 10.6084/m9.figshare.25148267
title: Datasets for the article: Simulation of Microcapsule Transport in Fractured Media Using Coupled CFD-DEM

description: In our paper 'Simulation of Microcapsule Transport in Fractured Media Using Coupled CFD-DEM', we employed the coupled computational fluid dynamics and discrete element method (CFD-DEM) to simulate the transport of microcapsules under various scenarios controlled by microcapsule size, microcapsule concentration, and fracture roughness. The input data files for simulations and the corresponding result data files are presented here.
DOI: 10.6084/m9.figshare.25752450
title: A feature-specific prediction error model explains dopaminergic heterogeneity

description: Data used for Lee et al. 2024 Nature Neuroscience.

Details of the data structure can be found in the README.txt of https://github.com/ndawlab/vectorRPE
DOI: 10.6084/m9.figshare.9731489.v1
title: Data Extraction Form (DEF) with raw data

description: The spreadsheet, in MS-Excel format, provides the raw data from our systematic mapping satudy
DOI: 10.1594/pangaea.965004
title: Dataset of Soil Hydraulic Parameters in the Yellow River Basin

description: Soil hydraulic parameters are vital for precise characterization of soil hydrological processes. Although many studies have integrated comprehensive soil datasets, availability of data in sufficient quality remains limitted, especially for deep soil information from in-situ measurement.This dataset contains soil hydraulic parameter data, including 2924 soil texture, 2798 bulk density (BD), 2782 saturated hydraulic conductivity (Ks), and 1035 soil water retention curve (SWRC) parameter records down to a maximum profile depth of 5 m. It encompasses the entire Yellow River Basin (795,000 km²) which ranking as the fifth longest river in the world. Soil samples were obtained using high-density in situ field sampling at 475 sites from 2008 to 2019.The soil texture, BD, and Ks were directly measured from field samples. Mastersizer laser particle size analysers (Mastersizer 3000, Malvern Panalytical, UK) were used to determine soil particle size distribution and the classification of soil texture followed USDA standards. The undisturbed soil samples were initially immersed for 24 h to achieve full saturation, before we performed the determination of Ks using the constant-head method. The SWRC were measured by centrifuge (CR21N, Hitachi, Japan) first and we then used soilhypfit package in R (4.2.3) to predict SWRC parameters. The BD was assessed by oven-drying method (at 105°C for 10 h). All data underwent quality checks, and the dataset includes detailed annotations regarding the testing methods and data quality for various parameters.
description: Principal Investigator (PI) for all parameters are Yunqiang Wang and Yongping Tong.Further method/device information:* Soil texture quality: The absolute difference between the sum of particle size distribution and 100%, Level A (&lt;1%), Level B (1%≤difference&lt;2%), and Level C (2%≤difference&lt;3%)* Field capacity [fit_FC] and Permanent wilting point [PWP]: Predicted by fitted SWRC curve based on 'soilhypfit' package in R (4.2.3)* Soil saturated water conductivity [Ks]: Constant-head method* Coefficient of determination [fit_r²]: Coefficient of determination when fitting SWRC based on 'soilhypfit' package in R* Error, relative [θs_RE]: The absolute value of ((meaured_θs - fit_θs) / 100)
DOI: 10.17882/46532
title: Gridded climatology of the Mixed Layer (Depth and Temperature), the bottom of the Seasonal Thermocline (Depth and Temperature), and the upper-ocean Heat Storage Rate for the Mediterrean Sea.

description: These monthly gridded climatology were produced using MBT, XBT, Profiling floats, Gliders, and ship-based CTD data from different database and carried out in the Med. between 1969 and 2013.
The Mixed Layer Depth (MLD) is calculated with a delta T= 0.1 C criterion relative to 10m reference level on individual profiles. The Depth of the Bottom of the Seasonal Thermocline (DBST) is calculated on individual profiles as the maximum value from a vector composed of two elements: 1) the depth of the temperature minimum in the upper 200m; 2) the MLD. This double criterion for the calculation of DBST is necessary in areas where the mixed layer exceed 200m depth. DBST is the integration depth used in the calculation of the upper-ocean Heat Storage Rate.
For more details about the data and the methods used, see: Houpert et al. 2015, Seasonal cycle of the mixed layer, the seasonal thermocline and the upper-ocean heat storage rate in the Mediterranean Sea derived from observations, Progress in Oceanography, http://doi.org/10.1016/j.pocean.2014.11.004
DOI: 10.5281/zenodo.10125128
title: Isotopic analysis:  How our community analyzes soil and plant water samples for their isotopic composition

description: As part of a project to develop a common methodological framework for water sampling, extraction, and isotopic analysis to study vegetation water use, we conducted an informal survey of current practices.  A simple questionnaire via Google form was sent out to all members of the WATer isotopeS in the critical zONE (WATSON) European Cooperation in Science and Technology (COST) Action (#19120, 2020-2024) between July and September 2021. In this repository, we've included a brief write-up of this survey and the survey data.
DOI: 10.5281/zenodo.10423688
title: Daily GNSS time series of La Palma 2021 eruption

description: Time series form GNSS station in La Palma (Canary Island, Spain) during 2021 eruption (19/09/2021-21/01/2022). The daily neu time series have been computed in a Double Diference method using Bernese v.5.2 software as describe in the references.
DOI: 10.5281/zenodo.10794432
title: Mesosphere/lower thermosphere 3-dimensional spatially resolved winds observed by Chinese multistatic meteor radar network using the newly developed VVP method

description: This dataset supports the article "Mesosphere/lower thermosphere 3-dimensional spatially resolved winds observed by Chinese multistatic meteor radar network using the newly developed VVP method" . The data are provided in MatLab format.
DOI: 10.5281/zenodo.10951737
title: Tables of results for lower mantle grain size and viscosity estimates

description: Data on diffusivity, grain size, and viscosity calculations are shown in Figs. 7-10 and Figs. S4-S5 in Okamoto and Hiraga's "A Common Diffusional Mechanism for Creep and Grain Growth in Polycrystalline Rocks: Application to Lower Mantle Viscosity Estimates".
DOI: 10.5281/zenodo.11480259
title: Changes in productivity partitioning induced by precipitation extremes increase inaccuracy of grassland carbon estimation

description: The fraction of net primary productivity (NPP) allocated to belowground organs (fBNPP) in grasslands is a critical parameter in global carbon cycle models; moreover, understanding the effect of precipitation changes on this parameter is vital to accurately estimating carbon sequestration in grassland ecosystems. Here, by conducting both a precipitation gradient experiment (100–500 mm) and a long-term observational study (34 years) in the Inner Mongolia grassland, we showed that fBNPP decreased linearly along the precipitation gradient from extreme drought to extreme wetness due to stronger responses in aboveground NPP (ANPP) to drought and wet conditions than those of BNPP. The linearly decreasing response pattern in fBNPP should be incorporated into models that forecast carbon sequestration in grassland ecosystems; failure to do so will lead to underestimation of the carbon stock in drought years and overestimation of the carbon stock in wet years in grasslands.
DOI: 10.5281/zenodo.4116312
title: Bonding of gold nanoclusters on graphene with and without point defects

description: Theoretical data set for the Nanomaterials paper "Bonding of gold nanoclusters on graphene with and without point defects". Data structure and formats are described in the README.docx file.