cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.928575.v1
title: Cannabis Microbiome Raw Sequence File xab

description: XAB
DOI: 10.6084/m9.figshare.928585.v1
title: Raw Sequence Files

description: Fastq format files split and gzipped.
DOI: 10.6084/m9.figshare.928564
title: Plain text file, raw digital elevation model for Kameni islands, Santorini using 2004 data

description: Plain text file, with the dataset for the raw digital elevation model, from 2004. Published in 2006 by DM Pyle & JR Elliott, Quantitative morphology, recent evolution, and future activity of the Kameni Islands volcano, Santorini, Greece, Geosphere, 2 (5), 253-268. The original LiDAR data were collected in an airborne campaign funded by the UK Natural Environment Research Council, and carried out by the NERC Airborne Research and Surveu Facility
DOI: 10.6084/m9.figshare.928567
title: Hemigrapsus oregonensis antennule flicking PIV data

description: Data set to accomplying upcoming publication: "Ontogenetic changes in the olfactory antennules of the shore crab, Hemigrapsus oregonensis, maintain sniffing function during growth" by Lindsay D. Waldrop, Miranda Hann, Amy Henry, Agnes Kim, Ayesha Punjabi, and M. A. R. Koehl. Data contained in these files are a structured array of velocity vector data from particle image velocimetry (PIV) through a dynamically scaled physical model of the first antenna (antennule) of Hemigrapsus oregonensis during antennule flicking for use with Matlab 2010a. Event###_flickdata.mat files contain a structured array of post-processed PIV data averaged over three replicate runs. The carapace width, replicate number, model type, and other relevant information is contained within the structured array for each file. Event###_newdata.mat files contain the PIV velocity vector data reinterpolated over a 1000 by 1000 point grid streamlined for use with an advection model also reported in the upcoming publication noted above.
DOI: 10.6084/m9.figshare.928568
title: Gaussian Job Archive for C108H156Cl2Ge2N2Si4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928568.v1
title: Gaussian Job Archive for C108H156Cl2Ge2N2Si4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928558
title: Creating Champions For Open Source Rare Disease Drug Discovery With An App

description: poster for World Symposim 2014
DOI: 10.6084/m9.figshare.928567.v2
title: Hemigrapsus oregonensis antennule flicking PIV data

description: Data set to accomplying upcoming publication: "Ontogenetic changes in the olfactory antennules of the shore crab, Hemigrapsus oregonensis, maintain sniffing function during growth" by Lindsay D. Waldrop, Miranda Hann, Amy Henry, Agnes Kim, Ayesha Punjabi, and M. A. R. Koehl. Data contained in these files are a structured array of velocity vector data from particle image velocimetry (PIV) through a dynamically scaled physical model of the first antenna (antennule) of Hemigrapsus oregonensis during antennule flicking for use with Matlab 2010a. Event###_flickdata.mat files contain a structured array of post-processed PIV data averaged over three replicate runs. The carapace width, replicate number, model type, and other relevant information is contained within the structured array for each file. Event###_newdata.mat files contain the PIV velocity vector data reinterpolated over a 1000 by 1000 point grid streamlined for use with an advection model also reported in the upcoming publication noted above.
DOI: 10.6084/m9.figshare.928573.v2
title: Panama bacterial phyllosphere sequences

description: Bacterial 16S rRNA gene sequence data (chloroplast-excluding primers 799f/1115r) and metadata for bacterial communities sampled from plant leaf surfaces on Barro Colorado Island, Panama. Data collection procedures are described in the paper "Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest" by Kembel et al. (manuscript in press at PNAS). Multiple sets of files are included in this data archive: <strong>bacteria_phyllosphere_metadata.txt</strong> - a tab-delimited text file with information on barcode sequences and host species identity for each sample. The columns of the text file include a sample identifier (SampleID), forward and reverse barcode sequences* (ForwardBarcodeSequence and ReverseBarcodeSequence), and the identity of the host plant species from which each sample was collected (HostSpecies). * note that in the raw sequence data, a combinatorial or dual-index barcoding approach was used to uniquely identify samples. The first 6bp of the barcode are on the forward read, and the final 6bp of the barcode are on the reverse read. The barcodes will need to be combined into a single 12bp construct prior to parsing into samples, or parsed with software capable of processing dual-indexed sequences. <strong>phyllobacteria.fastq.tgz.part-xx</strong> - raw sequence data in FASTQ format, produced by a sequencing run using Illumina HiSeq 150bp paired-end sequencing technology. Due to file size limitations, the original tar/gzip archives have been split into multiple parts. To recombine and uncompress the sequence files, the following command works in a Linux/Unix environment: cat phyllobacteria.fastq.tgz.part-* | tar xz
DOI: 10.6084/m9.figshare.928547
title: Attendance and number of Software Carpentry workshops January 2012 - January 2014

description: Enrollment data: Cumulative number of people enrolled for each Software Carpentry workshop where attendance numbers were noted. N.B. Enrolment figures are somewhat imprecise: individuals that attended on day 1 but not day 2 were included, while those that attended without registration were not included. Hopefully these two effects more or less cancel out and should should not detract from the overall trend displayed. Workshop data: Dates of all Software Carpentry workshops held to date.
DOI: 10.6084/m9.figshare.928567.v1
title: Hemigrapsus oregonensis antennule flicking PIV data

description: Data set to accomplying upcoming publication: "Ontogenetic changes in the olfactory antennules of the shore crab, Hemigrapsus oregonensis, maintain sniffing function during growth" by Lindsay D. Waldrop, Miranda Hann, Amy Henry, Agnes Kim, Ayesha Punjabi, and M. A. R. Koehl. Data contained in these files is velocity vector data from particle image velocimetry (PIV) through a dynamically scaled physical model of the first antenna (antennule) of Hemigrapsus oregonensis during antennule flicking for use with Matlab 2010a. Event###_flickdata.mat files contain post-processed PIV data averaged over three replicate runs. Event###_newdata.mat files contain the PIV velocity vector data reinterpolated over a 1000 by 1000 point grid for use with advection model also reported in upcoming publication (also on figshare).
DOI: 10.6084/m9.figshare.928528
title: Gaussian Job Archive for C18H19Al2Br7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928540
title: Nominal Group Technique consultation of a Pulmonary Rehabilitation Programme Data Set

description: Dataset 1: NGT activity with patients- positive aspects<br>Final agreed list of positive aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for each of the patient participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.<br>Dataset 2: NGT activity with patients- challenging aspects<br>Final agreed list of challenging aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for each of the patient participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.<br>Dataset 3: NGT activity with significant others- positive aspects<br>Final agreed list of positive aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for each of the significant other (Sig oth) participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.<br>Dataset 4: NGT activity with significant others- challenging aspects<br>Final agreed list of challenging aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for each of the significant other (Sig oth) participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.<br>Dataset 5: NGT activity with professionals- positive aspects<br>Final agreed list of positive aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for each of the professional (Prof) participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.<br>Dataset 6: NGT activity with professions- challenging aspects<br>Final agreed list of challenging aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for each of the professional (Prof) participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.<br>Dataset 7: Thematic NGT activity<br>Final agreed thematic consensus list of positive and challenging aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for all the participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.
DOI: 10.6084/m9.figshare.928547.v1
title: Attendance and number of Software Carpentry workshops January 2012 - January 2014

description: Enrollment data: Cumulative number of people enrolled for each Software Carpentry workshop where attendance numbers were noted. N.B. Enrolment figures are somewhat imprecise: individuals that attended on day 1 but not day 2 were included, while those that attended without registration were not included. Hopefully these two effects more or less cancel out and should should not detract from the overall trend displayed. Workshop data: Dates of all Software Carpentry workshops held to date.
DOI: 10.6084/m9.figshare.928527
title: Gaussian Job Archive for C6H7(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928540.v1
title: Nominal Group Technique consultation of a Pulmonary Rehabilitation Programme Data Set

description: Dataset 1: NGT activity with patients- positive aspects<br>Final agreed list of positive aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for each of the patient participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.<br>Dataset 2: NGT activity with patients- challenging aspects<br>Final agreed list of challenging aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for each of the patient participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.<br>Dataset 3: NGT activity with significant others- positive aspects<br>Final agreed list of positive aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for each of the significant other (Sig oth) participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.<br>Dataset 4: NGT activity with significant others- challenging aspects<br>Final agreed list of challenging aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for each of the significant other (Sig oth) participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.<br>Dataset 5: NGT activity with professionals- positive aspects<br>Final agreed list of positive aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for each of the professional (Prof) participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.<br>Dataset 6: NGT activity with professions- challenging aspects<br>Final agreed list of challenging aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for each of the professional (Prof) participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.<br>Dataset 7: Thematic NGT activity<br>Final agreed thematic consensus list of positive and challenging aspects of a Pulmonary Rehabilitation Programme for COPD patients. Data are illustrated for all the participants and the generated aspects are ranked in order of importance according to their calculated median and inter-quartile range (IQR) scores.
DOI: 10.6084/m9.figshare.928573.v3
title: Panama bacterial phyllosphere sequences

description: Bacterial 16S rRNA gene sequence data (chloroplast-excluding primers 799f/1115r) and metadata for bacterial communities sampled from plant leaf surfaces on Barro Colorado Island, Panama. Data collection procedures are described in the paper "Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest" by Kembel et al. (manuscript in press at PNAS). Multiple sets of files are included in this data archive: <strong>bacteria_phyllosphere_metadata.txt</strong> - a tab-delimited text file with information on barcode sequences and host species identity for each sample. The columns of the text file include a sample identifier (SampleID), forward and reverse barcode sequences* (ForwardBarcodeSequence and ReverseBarcodeSequence), and the identity of the host plant species from which each sample was collected (HostSpecies). * note that in the raw sequence data, a combinatorial or dual-index barcoding approach was used to uniquely identify samples. The first 6bp of the barcode are on the forward read, and the final 6bp of the barcode are on the reverse read. The barcodes will need to be combined into a single 12bp construct prior to parsing into samples, or parsed with software capable of processing dual-indexed sequences. <strong>phyllobacteria.fastq.tgz.part-xx</strong> - raw sequence data in FASTQ format, produced by a sequencing run using Illumina HiSeq 150bp paired-end sequencing technology. Due to file size limitations, the original tar/gzip archives have been split into multiple parts. To recombine and uncompress the sequence files, the following command works in a Linux/Unix environment: cat phyllobacteria.fastq.tgz.part-* | tar xz
DOI: 10.6084/m9.figshare.928527.v1
title: Gaussian Job Archive for C6H7(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928528.v1
title: Gaussian Job Archive for C18H19Al2Br7

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928573.v4
title: Panama bacterial phyllosphere sequences

description: Bacterial 16S rRNA gene sequence data (chloroplast-excluding primers 799f/1115r) and metadata for bacterial communities sampled from plant leaf surfaces on Barro Colorado Island, Panama. Data collection procedures are described in the paper "Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest" by Kembel et al. (manuscript in press at PNAS). Multiple sets of files are included in this data archive: <strong>bacteria_phyllosphere_metadata.txt</strong> - a tab-delimited text file with information on barcode sequences and host species identity for each sample. The columns of the text file include a sample identifier (SampleID), forward and reverse barcode sequences* (ForwardBarcodeSequence and ReverseBarcodeSequence), and the identity of the host plant species from which each sample was collected (HostSpecies). * note that in the raw sequence data, a combinatorial or dual-index barcoding approach was used to uniquely identify samples. The first 6bp of the barcode are on the forward read, and the final 6bp of the barcode are on the reverse read. The barcodes will need to be combined into a single 12bp construct prior to parsing into samples, or parsed with software capable of processing dual-indexed sequences. <strong>phyllobacteria.fastq.tgz.part-xx</strong> - raw sequence data in FASTQ format, produced by a sequencing run using Illumina HiSeq 150bp paired-end sequencing technology. Due to file size limitations, the original tar/gzip archives have been split into multiple parts. To recombine and uncompress the sequence files, the following command works in a Linux/Unix environment: cat phyllobacteria.fastq.tgz.part-* | tar xz
DOI: 10.6084/m9.figshare.928500
title: BP_Prior v2.9.1 (a.k.a. PERA)

description: BioPAX (BP) Prior (also known as PERA) is a tool for people who work with proteomics data and want to conduct pathway-context aware analysis. Given a set of annotated protein states, (such as phosphorylations, active/inactive tags and concentration levels), this programs creates a map from the input states onto the Pathway Commons 2 entities and finds the minimum distance between them -- the distances are extracted from BioPAX graphs. The ouput, so called prior information network, is a tab-limited file in Simple Interaction Format and it contains: - Source/target entities - Directional distance measure between these two entities - Pubmed IDs associated with links as external references - Reactions and their types included in the path between two entities.
DOI: 10.6084/m9.figshare.928495
title: BP_Prior v2.3.2

description: BioPAX (BP) Prior s a tool for people who work with proteomics data and want to conduct pathway-context aware analysis. Given a set of annotated protein states, (such as phosphorylations, active/inactive tags and concentration levels), this programs creates a map from the input states onto the Pathway Commons 2 entities and finds the minimum distance between them -- the distances are extracted from BioPAX graphs. The ouput, so called prior information network, is a tab-limited file in Simple Interaction Format and it contains: - Source/target entities - Directional distance measure between these two entities - Pubmed IDs associated with links as external references - Reactions and their types included in the path between two entities.
DOI: 10.6084/m9.figshare.928500.v2
title: BP_Prior v2.9.1 (a.k.a. PERA)

description: BioPAX (BP) Prior (also known as PERA) is a tool for people who work with proteomics data and want to conduct pathway-context aware analysis. Given a set of annotated protein states, (such as phosphorylations, active/inactive tags and concentration levels), this programs creates a map from the input states onto the Pathway Commons 2 entities and finds the minimum distance between them -- the distances are extracted from BioPAX graphs. The ouput, so called prior information network, is a tab-limited file in Simple Interaction Format and it contains: - Source/target entities - Directional distance measure between these two entities - Pubmed IDs associated with links as external references - Reactions and their types included in the path between two entities.
DOI: 10.6084/m9.figshare.928490
title: BP_Prior v2.11.0

description: BioPAX (BP) Prior s a tool for people who work with proteomics data and want to conduct pathway-context aware analysis. Given a set of annotated protein states, (such as phosphorylations, active/inactive tags and concentration levels), this programs creates a map from the input states onto the Pathway Commons 2 entities and finds the minimum distance between them -- the distances are extracted from BioPAX graphs. The ouput, so called prior information network, is a tab-limited file in Simple Interaction Format and it contains: - Source/target entities - Directional distance measure between these two entities - Pubmed IDs associated with links as external references - Reactions and their types included in the path between two entities.
DOI: 10.6084/m9.figshare.928495.v1
title: BP_Prior v2.3.2

description: BioPAX (BP) Prior s a tool for people who work with proteomics data and want to conduct pathway-context aware analysis. Given a set of annotated protein states, (such as phosphorylations, active/inactive tags and concentration levels), this programs creates a map from the input states onto the Pathway Commons 2 entities and finds the minimum distance between them -- the distances are extracted from BioPAX graphs. The ouput, so called prior information network, is a tab-limited file in Simple Interaction Format and it contains: - Source/target entities - Directional distance measure between these two entities - Pubmed IDs associated with links as external references - Reactions and their types included in the path between two entities.
DOI: 10.6084/m9.figshare.928500.v1
title: BP_Prior v2.9.1

description: BioPAX (BP) Prior s a tool for people who work with proteomics data and want to conduct pathway-context aware analysis. Given a set of annotated protein states, (such as phosphorylations, active/inactive tags and concentration levels), this programs creates a map from the input states onto the Pathway Commons 2 entities and finds the minimum distance between them -- the distances are extracted from BioPAX graphs. The ouput, so called prior information network, is a tab-limited file in Simple Interaction Format and it contains: - Source/target entities - Directional distance measure between these two entities - Pubmed IDs associated with links as external references - Reactions and their types included in the path between two entities.
DOI: 10.6084/m9.figshare.928466
title: Gaussian Job Archive for C18H15B

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928465
title: Gaussian Job Archive for C65H98ClGeN3Si2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928466.v1
title: Gaussian Job Archive for C18H15B

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928478
title: Pollinator specificity drives strong prepollination reproductive isolation in sympatric sexually deceptive orchids (Data Archive)

description: Data supporting in press manuscript: Whitehead M, Peakall R "Pollinator specificity drives strong prepollination reproductive isolation in sympatric sexually deceptive orchids." <em>Evolution</em>
DOI: 10.6084/m9.figshare.928440
title: Intraspecific variation in physiological condition of reef-building corals associated with differential levels of chronic disturbance

description: Raw data on background mortality on corals around Lizard Island
DOI: 10.6084/m9.figshare.928440.v1
title: Intraspecific variation in physiological condition of reef-building corals associated with differential levels of chronic disturbance

description: Raw data on background mortality on corals around Lizard Island
DOI: 10.6084/m9.figshare.928465.v1
title: Gaussian Job Archive for C65H98ClGeN3Si2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.