cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7446653
title: Effects of the environmental conditions and seasonality on a population survey of the Andean Condor Vultur gryphus in the tropical Andes

description: Script, datasets, and other supplementary material in Márquez-Alvis et al. 2023 PeerJ.<br> <br> <strong>Background:</strong> Among the New World vultures, the Andean Condor is considered one of the most culturally and ecologically important species. However, their populations are declining over their entire distributional range. In response, conservation strategies have been implemented in many countries to reverse the increasing extinction risk of this species. The initiatives rely on extensive population surveys to gather basic information necessary to implement policies and to intervene efficiently. Still, there is a need to standardize the surveys based on seasonality and suitable environmental conditions throughout the species distribution. Here, we provide the first assessment of how daily temperature, rainfall, and seasonality influence surveys of Andean Condors on a communal roost in the central Peruvian Andes. <strong>Methods:</strong> Using an autoregressive generalized linear model, we associated environmental variables with visual surveys of adult and young condors at three different times of the day and three times a week between June 2014 and March 2015. <strong>Results:</strong> We found that both adults and young Andean Condors showed a threefold reduction in the use of the communal roost after the beginning of the rainy season. Colder and drier days (dry season) are preferable for surveying, as we expect the total number of condors using communal roosts to reduce under rainy (rainfall = -0.53 ± 0.16) and warmer days (temperature= - 0.04 ± 0.02) days. Therefore, the significant variation in the use of roosts across seasons and hours should be carefully accounted for in national surveys, at the risk of undermining the full potential of the communal roost surveys. Moreover, we also found a strong bias towards immatures (about 76%) in the adult:immature ratio and a remarkable absence of Andean Condors during the wet season. These results suggest that the species might be using other unknown communal roosts hierarchically. Such results provide key information for selecting priority areas for conservation and selecting the best time to survey this species in the tropical Andes. Finally, it may open a fruitful avenue for further research on the protection of the Andean Condor.
DOI: 10.5281/zenodo.7088810
title: Experimental data of photovoltaic cable submersion tests

description: Experimental data tables regarding the study of submersion of photovoltaic cables (with two different insulation materials) in freshwater and artificial seawater. Subjected to real life conditions, replicating when FPV systems are located in reservoirs or in the marine environment. Electrical insulation tests were carried out weekly to assess possible cable degradation, the physical-chemical characteristics of the water were also periodically monitored, complemented by analysis to detect traces of copper and microplastics in the water.
description: The authors would like to thank the support of this work, developed under the EERES4WATER project (EAPA_1058/2018), co-financed by the Interreg Atlantic Area Programme through the European Development Regional Fund.
DOI: 10.5281/zenodo.7088811
title: Experimental data of photovoltaic cable submersion tests

description: Experimental data tables regarding the study of submersion of photovoltaic cables (with two different insulation materials) in freshwater and artificial seawater. Subjected to real life conditions, replicating when FPV systems are located in reservoirs or in the marine environment. Electrical insulation tests were carried out weekly to assess possible cable degradation, the physical-chemical characteristics of the water were also periodically monitored, complemented by analysis to detect traces of copper and microplastics in the water.
description: The authors would like to thank the support of this work, developed under the EERES4WATER project (EAPA_1058/2018), co-financed by the Interreg Atlantic Area Programme through the European Development Regional Fund.
DOI: 10.5281/zenodo.7746043
title: Experimental data of photovoltaic cable submersion tests

description: Experimental data tables regarding the study of submersion of photovoltaic cables (with two different insulation materials) in freshwater and artificial seawater. Subjected to real life conditions, replicating when FPV systems are located in reservoirs or in the marine environment. Electrical insulation tests were carried out weekly to assess possible cable degradation, the physical-chemical characteristics of the water were also periodically monitored, complemented by analysis to detect traces of copper and microplastics in the water.
description: The authors would like to thank the support of this work, developed under the EERES4WATER project (EAPA_1058/2018), co-financed by the Interreg Atlantic Area Programme through the European Development Regional Fund.
DOI: 10.6084/m9.figshare.20375394
title: Annual dynamic dataset of global land surface phenology from AVHRR data using multiple phenology retrieval methods for the period 1982 to 2018

description: We retrieved the global SOS, maturity, senescence, and EOS from 1982 to 2018 using four common phenology retrieving methods based on long time series of AVHRR observations, considering multiple vegetation growing seasons in a year.
DOI: 10.5281/zenodo.7746070
title: Floating Photovoltaics Installed Capacity in Europe in 2020

description: Collected data for existing Installed Capacity regarding Floating Photovoltaics Plants in Euroep in 2020. Data collected from public available sources.
description: The authors would like to thank the support of this work, developed under the EERES4WATER project (EAPA_1058/2018), co-financed by the Interreg Atlantic Area Programme through the European Development Regional Fund.
DOI: 10.5281/zenodo.7746069
title: Floating Photovoltaics Installed Capacity in Europe in 2020

description: Collected data for existing Installed Capacity regarding Floating Photovoltaics Plants in Euroep in 2020. Data collected from public available sources.
description: The authors would like to thank the support of this work, developed under the EERES4WATER project (EAPA_1058/2018), co-financed by the Interreg Atlantic Area Programme through the European Development Regional Fund.
DOI: 10.5281/zenodo.7746048
title: Acoustic Doppler current profiles on a shallow water area near Lazzareto Nuovo island (Venice Lagoon, Italy) - BRAHMS project

description: Vertical profiles of 3D currents (10cm-thick cells) collected every 10-15 minutes during few hours (a tidal phase) throughout a section in a shallow water area (average depth about 1.5 m) along a minor tidal channel branching from Canale Carbonera near Lazzareto Nuovo island, Lagoon of Venice (IT). A mini-raft has been equipped with a down-looking ADCP and pulled back and forth (with a pulley) between two poles driven on the seabed.
description: The research leading to these results received partial funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 730984, ASSEMBLE Plus project
DOI: 10.5281/zenodo.7746047
title: Acoustic Doppler current profiles on a shallow water area near Lazzareto Nuovo island (Venice Lagoon, Italy) - BRAHMS project

description: Vertical profiles of 3D currents (10cm-thick cells) collected every 10-15 minutes during few hours (a tidal phase) throughout a section in a shallow water area (average depth about 1.5 m) along a minor tidal channel branching from Canale Carbonera near Lazzareto Nuovo island, Lagoon of Venice (IT). A mini-raft has been equipped with a down-looking ADCP and pulled back and forth (with a pulley) between two poles driven on the seabed.
description: The research leading to these results received partial funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 730984, ASSEMBLE Plus project
DOI: 10.18112/openneuro.ds004017.v1.0.1
title: Embodied Learning for Literacy EEG
DOI: 10.5281/zenodo.7746004
title: Acoustic Doppler current profiles on a shallow water area near Allacciante - Valgrande channels (Venice Lagoon, Italy) - BRAHMS project

description: Vertical profiles of 3D currents (10cm-thick cells) collected every 10-15 minutes during few hours (a tidal phase) throughout a section in a shallow water area (average depth about 1.5 m) on a subidal flat near Allacciante and Valgrande channels, Lagoon of Venice (IT). A mini-raft has been equipped with a down-looking ADCP and pulled back and forth (with a pulley) between two poles driven on the seabed.
description: The research leading to these results received partial funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 730984, ASSEMBLE Plus project
DOI: 10.5281/zenodo.7746003
title: Acoustic Doppler current profiles on a shallow water area near Allacciante - Valgrande channels (Venice Lagoon, Italy) - BRAHMS project

description: Vertical profiles of 3D currents (10cm-thick cells) collected every 10-15 minutes during few hours (a tidal phase) throughout a section in a shallow water area (average depth about 1.5 m) on a subidal flat near Allacciante and Valgrande channels, Lagoon of Venice (IT). A mini-raft has been equipped with a down-looking ADCP and pulled back and forth (with a pulley) between two poles driven on the seabed.
description: The research leading to these results received partial funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 730984, ASSEMBLE Plus project
DOI: 10.48329/wqwz-m242
title: CPRD GOLD March 2023

description: The CPRD GOLD database contains longitudinal routinely-collected electronic health records (EHR data) from UK primary care practices using Vision® general practice patient management software. The database captures information on demographic characteristics; diagnoses and symptoms; drug exposures; vaccination history; laboratory tests; and referrals to hospital and specialist care. Access to anonymised data from CPRD is subject to a full licence agreement containing detailed terms and conditions of use. Anonymised patient datasets can be extracted for researchers against specific study specifications, following protocol approval. Further information is available at https://www.cprd.com/data-access.
DOI: 10.18112/openneuro.ds004017.v1.0.2
title: Embodied Learning for Literacy EEG
DOI: 10.6084/m9.figshare.22294390
title: Polygenic score (PGS) for Refractive Error (eBioMedicine)

description: A polygenic score (PGS) for refractive error. Fields are whitespace separated. Field names are: SNP CHR POS REF_allele EFFECT_allele BETA.
DOI: 10.6084/m9.figshare.21346569
title: Polyphasic study of phytopathogenic bacterial strains associated with deep bark canker of walnut in Serbia revealed a new species, Brenneria izbisi sp. nov.

description: In the present work, draft whole-genome sequences were obtained for two novel <em>Brenneria</em> strains (KBI 423T and KBI 447). <em>De novo</em> sequence assembly was performed using SPAdes 3.15.3 (with options -k 21,33,55,77 and --isolate) (Prjibelski et al., 2020). The genome sequences were annotated using Prokka (Galaxy Version 1.13) (Seemann, 2014). These files were used as an input for analyses performed in our study (core-genome phylogeny and OGRIs). Taken together, the dataset contained two strains studied (KBI 423T and KBI 447), as well as reference strains of <em>Brenneria</em> (14 strains), <em>Dickeya</em> (3 strains), <em>Lonsdalea</em> (3 strains) and<em> Pectobacterium</em> (3 strains). As an outgroup, we used members of the family <em>Erwiniaceae</em>, including <em>Erwinia</em> spp. (4 strains) and <em>Pantoea</em> spp. (4 strains). Here, we included raw reads used for <em>de novo</em> assembly of <em>Brenneria</em> genomes (KBI 423T and KBI 447). We also uploaded resulting assembly .fasta files, including those of reference strains used in analysis, as well as their annotation files obtained by prokka (.gbk files).
DOI: 10.6084/m9.figshare.21346569.v1
title: Polyphasic study of phytopathogenic bacterial strains associated with deep bark canker of walnut in Serbia revealed a new species, Brenneria izbisi sp. nov.

description: In the present work, draft whole-genome sequences were obtained for two novel <em>Brenneria</em> strains (KBI 423T and KBI 447). <em>De novo</em> sequence assembly was performed using SPAdes 3.15.3 (with options -k 21,33,55,77 and --isolate) (Prjibelski et al., 2020). The genome sequences were annotated using Prokka (Galaxy Version 1.13) (Seemann, 2014). These files were used as an input for analyses performed in our study (core-genome phylogeny and OGRIs). Taken together, the dataset contained two strains studied (KBI 423T and KBI 447), as well as reference strains of <em>Brenneria</em> (14 strains), <em>Dickeya</em> (3 strains), <em>Lonsdalea</em> (3 strains) and<em> Pectobacterium</em> (3 strains). As an outgroup, we used members of the family <em>Erwiniaceae</em>, including <em>Erwinia</em> spp. (4 strains) and <em>Pantoea</em> spp. (4 strains). Here, we included raw reads used for <em>de novo</em> assembly of <em>Brenneria</em> genomes (KBI 423T and KBI 447). We also uploaded resulting assembly .fasta files, including those of reference strains used in analysis, as well as their annotation files obtained by prokka (.gbk files).
DOI: 10.6084/m9.figshare.22193809
title: Supplementary_Tables

description: Supplementary_Tables
DOI: 10.6084/m9.figshare.22193809.v1
title: Supplementary_Tables

description: Supplementary_Tables
DOI: 10.5517/ccdc.csd.cc28srtn
title: CCDC 2109172: Experimental Crystal Structure Determination

description: Related Article: Hui-Min Zeng, Bo-Xing Jin, Wei-Hong Wu, Chao Wang, Zhan-Guo Jiang, Zhigang Jin, Cai-Hong Zhan|2022|Chem.Mater.|34|2989|doi:10.1021/acs.chemmater.1c03837
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28srys
title: CCDC 2109176: Experimental Crystal Structure Determination

description: Related Article: Hui-Min Zeng, Bo-Xing Jin, Wei-Hong Wu, Chao Wang, Zhan-Guo Jiang, Zhigang Jin, Cai-Hong Zhan|2022|Chem.Mater.|34|2989|doi:10.1021/acs.chemmater.1c03837
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28stlh
title: CCDC 2109227: Experimental Crystal Structure Determination

description: Related Article: Hui-Min Zeng, Bo-Xing Jin, Wei-Hong Wu, Chao Wang, Zhan-Guo Jiang, Zhigang Jin, Cai-Hong Zhan|2022|Chem.Mater.|34|2989|doi:10.1021/acs.chemmater.1c03837
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22114574.v1
title: Figure 2 experiment deposit profiles

description: Radial deposit topography profiles of experimental terraced deposits for experiments 6 & 10 shown in Figure 2.
DOI: 10.5517/ccdc.csd.cc2d5dff
title: CCDC 2209724: Experimental Crystal Structure Determination

description: Related Article: Deep Kumar Das, Rangarajan Bakthavatsalam, Venkatesha R. Hathwar, Raghavaiah Pallepogu, Janardan Kundu|2023|J.Mater.Chem.C|11|3855|doi:10.1039/D2TC04361K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.57745/de4rkq
title: Vaquey_G1_clonal_trial_height_and_genotypes-v0.tab

description: Height and genotypes of G1 trees (Vaquey clonal trial).
DOI: 10.57745/obkrlt
title: Hermitage_G0_halfsib_trial_phenotypes-v0.tab

description: Phenotypes of Hermitage half-sib trial (G0 offsprings).
DOI: 10.57745/49e5rb
title: SNP_sequences-v0.tab

description: SNP identifiers and sequences.
DOI: 10.57745/2aef90
title: Vaquey_G1_clonal_trial_kinship_matrix-v0.tab

description: Kinship matrix of G1 genotypes (Vaquey clonal trial).
DOI: 10.6084/m9.figshare.19629855.v2
title: Appendix 11.1_for_Aiglstorfer et al. (2023): “Musk Deer on the Run – Dispersal of Miocene Moschidae in the Context of Environmental Changes” in "Evolution of Cenozoic Land Mammal Faunas and Ecosystems - 25 Years of the NOW Database of Fossil Mammals" Ed. by Casanovas-Vilar et al. Springer: Cham, Switzerland, p. 165-186 Appendix 11.1_Aiglstorfer_supplement_localities_references.xls.

description: Appendix 11.1. List of localities to: Aiglstorfer et al. (2023): “Musk Deer on the Run – Dispersal of Miocene Moschidae in the Context of Environmental Changes” in "Evolution of Cenozoic Land Mammal Faunas and Ecosystems - 25 Years of the NOW Database of Fossil Mammals" Ed. by Casanovas-Vilar et al. Springer: Cham, Switzerland
DOI: 10.57745/sluea2
title: Hermitage_G0_mothers_BLUPs_genotypes-v0.tab

description: Best linear unbiaised predictors, locations and genotypes for G0 mothers of trees evaluated in Hermitage half-sib trial.
DOI: 10.6084/m9.figshare.19629855
title: Appendix 11.1_for_Aiglstorfer et al. (2023): “Musk Deer on the Run – Dispersal of Miocene Moschidae in the Context of Environmental Changes” in "Evolution of Cenozoic Land Mammal Faunas and Ecosystems - 25 Years of the NOW Database of Fossil Mammals" Ed. by Casanovas-Vilar et al. Springer: Cham, Switzerland, p. 165-186 Appendix 11.1_Aiglstorfer_supplement_localities_references.xls.

description: Appendix 11.1. List of localities to: Aiglstorfer et al. (2023): “Musk Deer on the Run – Dispersal of Miocene Moschidae in the Context of Environmental Changes” in "Evolution of Cenozoic Land Mammal Faunas and Ecosystems - 25 Years of the NOW Database of Fossil Mammals" Ed. by Casanovas-Vilar et al. Springer: Cham, Switzerland
DOI: 10.57745/nyisqb
title: Metadata-v0.tab

description: Metadata for the whole dataset.
DOI: 10.6084/m9.figshare.19629855.v1
title: Aiglstorfer et al. (2022): “Musk Deer on the Run – Dispersal of Miocene Moschidae in the Context of Environmental Changes” in "Evolution of Cenozoic Land Mammal Faunas and Ecosystems - 25 Years of the NOW Database of Fossil Mammals" Ed. by Casanovas-Vilar et al. Springer: Cham, Switzerland S1_Aiglstorfer_supplement_localities_references.xlsx

description: file S1. List of localities to: Aiglstorfer et al. (2022): “Musk Deer on the Run – Dispersal of Miocene Moschidae in the Context of Environmental Changes” in "Evolution of Cenozoic Land Mammal Faunas and Ecosystems - 25 Years of the NOW Database of Fossil Mammals" Ed. by Casanovas-Vilar et al. Springer: Cham, Switzerland
DOI: 10.57745/trzjgs
title: Vaquey_G1_clonal_trial_phenotypes_and_genotypes-v0.tab

description: Phenotypes and genotypes of G1 trees (Vaquey clonal trial).
DOI: 10.6084/m9.figshare.20581665
title: Tomography data and surface models for: A well-preserved ‘placoderm’ (Stem-group Gnathostomata) upper jaw from the Early Devonian of Mongolia clarifies jaw evolution

description: Synchrotron tomography
DOI: 10.6084/m9.figshare.21785609
title: Genome assemblies and annotation files

description: Genome assemblies and annotation files for strains <em>Rhizobium tumorigenes</em> 932 and 1078, and <em>Rhizobium rhododendri</em> rho-6.2.
DOI: 10.6084/m9.figshare.21785609.v1
title: Genome assemblies and annotation files

description: Genome assemblies and annotation files for strains <em>Rhizobium tumorigenes</em> 932 and 1078, and <em>Rhizobium rhododendri</em> rho-6.2.
DOI: 10.6084/m9.figshare.21785600
title: Species-specific genes

description: Outputs of GET_HOMOLOGUES software: genes specific for R. rhododendri and R. tumorigenes strains. The dataset included two <em>R. tumorigenes</em> strains (1078T and 932) and 12 strains comprising the new species <em>Rhizobium rhododendri</em> (see respective pubication).
DOI: 10.6084/m9.figshare.21785600.v1
title: Species-specific genes

description: Outputs of GET_HOMOLOGUES software: genes specific for R. rhododendri and R. tumorigenes strains. The dataset included two <em>R. tumorigenes</em> strains (1078T and 932) and 12 strains comprising the new species <em>Rhizobium rhododendri</em> (see respective pubication).
DOI: 10.6084/m9.figshare.21785573
title: Pan-genome phylogenies

description: Outputs of pan-genome analyses performed by GET_HOMOLOGUES pipeline.
DOI: 10.6084/m9.figshare.21785573.v1
title: Pan-genome phylogenies

description: Outputs of pan-genome analyses performed by GET_HOMOLOGUES pipeline.
DOI: 10.34620/dadosipb/0xmcgo
title: Resultados iniciais

description: Resultados do primeiro ensaio da MORA. Bactérias + Antibiótico
DOI: 10.6084/m9.figshare.21785570
title: Core-genome analysis

description: A consensus core-genome was determined as the intersection of the clusters computed by the BDBH, COG-triangles and OMCL algorithms using the script compare_clusters.pl (option “-t <em>number of genomes</em>”) of GET_HOMOLOGUES software package. The resulting core-genome clusters were processed with the GET_PHYLOMARKERS software package. For core-genome-based phylogenetic analyses, the latter pipeline was run using both DNA and protein sequences, thus generating core-genome and core-proteome phylogenies, respectively. The protein alignment outputted by the cpAAI pipeline (see below) was also used as input for phylogenetic analysis. A ML phylogeny was inferred under the best-fitting substitution model by employing IQ-TREE Version 2.1.3 and ModelFinder (integrated in IQ-TREE), following the same approach as implemented in the GET_PHYLOMARKERS package.
DOI: 10.6084/m9.figshare.22107725.v1
title: Fig 5 Richardson Number and Particle Volume Fraction data

description: Richard number and particle volume fraction data for Figure 5.
DOI: 10.6084/m9.figshare.21785456
title: Dataset

description: Dataset used for core-genome and pan-genome phylogeny. Both fasta and gbk files are uploaded, including the list of strains.
DOI: 10.6084/m9.figshare.22107401.v1
title: Fig 4 SW Jet Entrance Length and Deposit Scour radius data

description: Data for Figure 4 showing sedimentation wave jet entrance length into the water layer and deposit scour radius due to jetting SWs.
DOI: 10.6084/m9.figshare.22088168.v1
title: Fig 3c-d and S2 (Ext. Data) Experiment 11 height data

description: Experiment 11 fountain top height data shown in Figures 3c-d and Figure S2 in Extended Data.
DOI: 10.6084/m9.figshare.22087847.v1
title: Fig 1a Sumisu Radial Deposit Bathymetry Profiles

description: Radial deposit bathymetry profiles for Sumisu shown in Fig 1a.
DOI: 10.5281/zenodo.7651781
title: Synaptic gradients transform object location to action: data and outputs

description: Data an outputs associated with the following article: Dombrovski, M., Peek, M.Y., Park, JY. <em>et al.</em> Synaptic gradients transform object location to action. <em>Nature (2023)</em>. https://doi.org/10.1038/s41586-022-05562-8 and the following software: https://github.com/avaccari/DrosophilaVPNWiring