cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15280917
title: CTD, microstructure and ADCP data from Autosub Long Range under Dotson Ice Shelf, VMP data from the Dotson Ice Shelf front.

description: Matlab files of shipboard vertical microstructure profiler (VMP) transects. Matlab files of acoustic doppler current profiler (ADCP) transects and of microstructure transects, and csv files of CTD transects performed with AutoSub Long Range (ALR) under Dotson Ice Shelf, measured during the NBP2202 expedition between 20 Jan 2022 and 07 Feb 2022, used in the manuscript Richter et al. (in prep).

 

All data except the VMP data were collected onboard AutoSub Long Range deployed from Nathaniel B Palmer. The VMP data was collected from Nathaniel B Palmer. The data are part of the the Thwaites-Amundsen Regional Survey and Network Integrating Atmosphere-Ice-Ocean Processes (TARSAN) project, a component of the International Thwaites Glacier Collaboration (ITGC; https://thwaitesglacier.org/).

 

Filenames 

VMP_DIS_front.mat

ALR_CTD_<dive>.csv – the CTD data

adcp_ALR_<dive>.mat – the ADCP data

<dive>_hotelfile.mat – the microstructure data

dive is along, east, centre_short or centre_long.

 

VMP_DIS_front.mat contains the variables

eps_bin – turbulent kinetic energy dissipation rate (epsilon) in vertical 10 m bins (W kg-1)

VMPdepth – depth of the bin (m)

lonVMPfront – longitude of the deepest record in the cast

latVMPfront – latitude of the deepest record in the cast

timeVMPfront – time of cast, matlab datenum format

 

ALR_CTD_<dive>.csv contains the variables 

Time (UTC), latitude, longitude, pressure (db), Conservative Temperature (degC), and Absolute Salinity (g kg-1)

The CTD data were collected at 1 s frequency with a Seabird 52MP CTD

 

adcp_ALR_<dive>.mat

contains a matlab table with the variables

time (UTC), latitude, longitude, depth (m), meridional velocity (m s-1), zonal velocity (m s-1)

 

The ALR ADCP data were collected at 1 s frequency in twelve vertical 8 m bins with an upward and a downward looking RDI 300kHz ADCP and were processed with modified code from Eleanor Frajka-Williams' GitHub page (https://github.com/eleanorfrajka/alr_processing_dynopo), which builds on Rick Pawlowicz's RDADCP functions (https://www-old.eoas.ubc.ca/~rich/#RDADCP).

 

<dive>_hotelfile.mat

Contains a matlab structure with microstructure data converted to physical units using the ALR speed through water. The structure tree is given in the Readme, further information can be got from the ODAS Matlab Library v4.4 “A Guide to Data Processing”, RSI technical note 039. The microstructure data were collected with a Rockland MicroRider. See README file for details on the file structure
DOI: 10.15468/dl.4p5m5p
title: Occurrence Download

description: A dataset containing 3461 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Canada",
 "Country is Canada"
 ]
 },
 "TaxonKey is one of (Artemisia absinthium L.)"
 ]
}

 The dataset includes 3461 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002111-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76rmjj
title: Occurrence Download

description: A dataset containing 1488 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isostigma Less."
 ]
}

 The dataset includes 1488 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002112-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.1589818.v4
title: Spades E coli assembly visualised with bandage

description: While preparing for a course on de novo genome assembly, I tried out the excellent Bandage program for viewing assembly graphs. One spades assembly stuck out, as it showed a 'knot' of short contigs. Inspection of the sequencing of these contigs showed them to be derived from the rRNA loci of the genome (rRNA and tRNA genes). After I posted an image of the graph on twitter, a fellow researcher asked me for a citable copy of the figure. This figshare entry is meant to provide just that. I've also included the fastg file so those interested can load it into bandage.
DOI: 10.6084/m9.figshare.27307776.v1
title: WBM high energy states

description: This JSON files contains the dataset used to calculate the "softening scales" of universal machine learning interatomic potentials, as described in https://arxiv.org/abs/2405.07105The dataset is initially created by running 1000K Molecular Dynamics with the pretrained CHGNet on materials randomly sampled in the WBM dataset.If you use this dataset, please cite:@article{Deng_2024_softening, title={Overcoming systematic softening in universal machine learning interatomic potentials by fine-tuning}, DOI={10.48550/arxiv.2405.07105}, journal={arXiv}, author={Deng, Bowen and Choi, Yunyeong and Zhong, Peichen and Riebesell, Janosh and Anand, Shashwat and Li, Zhuohan and Jun, KyuJung and Persson, Kristin A and Ceder, Gerbrand}, year={2024} }
DOI: 10.17632/2w3kvrg97m
title: Brazilian Portuguese Hotel’s Reviews Corpus

description: Corpus composed of hotel reviews from TripAdvisor. OnTripAdvisor when making a review, users should enter the number of circles corresponding to the overall evaluation of the hotel, give a title to the evaluation, the evaluation with at least 200 characters, choose the month and year of the visit, as well as other non-mandatory information. We collected four information from the evaluations: the number of circles, the title, the evaluation and the date on which the evaluation was performed. The data were collected only from accommodations classified as hotels. The Reviews were collected from February to March 2018, so the most recent review dates from March 20, 2018. Reviews were taken from hotels of the 26 capitals of Brazilian states and the Federal District as well. We chose to collect reviews of hotels in the capitals in order to have a clear criteria of delimitation of the number of cities and to cover all Brazilian states as well. We gathered a total of 730,069 reviews. The first normalization we did in the corpus was the removal of the excesses of punctuation and sequence of repeated letters that did not form words. As TripAdvisor requires the user to write a comment of at least 200 characters, in several occasions the users completed the comments with punctuation sequences and random characters that did not form words, so we removed several of these occurrences. We kept reticence and sequences of up to three exclamation question marks (which may have some meaning when it comes to the sentiment analysis). We have developed a lexical dataset to help us to reduce the number of words that were linked to each other (eg ”Bomcaf ́edamanh ̃a”). We separated terms such as numbers or hyphens (preceded and followed by spaces) linked to words (eg “8Limpeza” to “8 Limpeza” and ‘-Gostei‘” to “- Gostei”). In addition,we kept the words the way they were written, even if incorrectly, due to typingerrors or intentionally. So we kept terms with “adoreeeeei” and “lliiiixxxoooo”(similar to “I loveeeeed it” and “trrraaaaaassshh”, respectively). On the Internet it is common to write uppercase terms as a way of emphasizing something either positively or negatively, for this reason we also kept the texts capitalization intact. After carrying out the normalizations, we have obtained a count of 56,743,114 tokens and 246,307 types. Considering stop-words and punctuation signs, we can see that each review, on average, consists of about 77 tokens, with the largest review having 2,857 tokens and the lowest having only 2 tokens. More details can be found in the paper: SOUZA, J. G. R. ; OLIVEIRA, A. P. ; MOREIRA, A. . Development of a Brazilian Portuguese Hotel's Reviews Corpus. In: PROPOR - International Conference on Computational Processing of the Portuguese Language, 2018, Canela. PROPOR - International Conference on Computational Processing of the Portuguese Language, 2018. v. 11122. p. 353-361.
DOI: 10.17632/6hm2xt5hd8
title: MAVES DB

description: Malayalam Audio-Visual Emotional Speech Data-Suitable for speech recognition, emotion recognition etc.
DOI: 10.26188/12479279.v1
title: ACCORD Sarcoma Database

description: Database for the collection and management of information relating to patients with Bone and Soft Tissue Tumours including information on diagnosis, treatment and outcomes.
DOI: 10.6084/m9.figshare.27268380.v1
title: Supplementary Material for: Pigmented Superficial Basal Cell Carcinoma of the Nipple-Areola Complex-- A case report

description: Introduction: Basal cell carcinoma (BCC) is the most common type of skin malignancy, accounting for approximately 80% of all non-melanoma skin cancers (NMSCs). Ultraviolet (UV) exposure is a significant risk factor for BCC development, which typically occurs in sun-exposed areas. BCC arising in non-sun-exposed regions, such as the nipple-areola complex (NAC), is exceedingly rare, with fewer than 100 cases reported globally. This report describes a case of pigmented superficial BCC in the NAC of a 76-year-old Asian woman. Case Presentation: A 76-year-old Asian female presented with a five-year history of a slowly enlarging lesion on her left breast, with recent rapid growth. Physical examination revealed a 10mm x 8mm blue-gray, pearl-like plaque on the NAC. Histopathology confirmed pigmented superficial BCC. Pre-operative imaging, including breast ultrasound, chest CT, SPECT-CT, and axillary lymph node ultrasound, showed no evidence of metastasis. The patient underwent standard surgical excision with a 10mm margin, followed by pathologic evaluation, confirming clear margins. The patient was discharged on the second post-operative day and remained asymptomatic at a 3-month follow-up. Conclusion: Pigmented superficial BCC of the NAC is an uncommon presentation due to the area's minimal sun exposure and lack of pilosebaceous units. This case underscores the importance of considering BCC in non-sun-exposed areas, particularly in elderly patients. While non-surgical options such as photodynamic therapy (PDT) may offer superior aesthetic outcomes, the patient's financial constraints led to the selection of a cost-effective surgical excision, which successfully eliminated the tumor.
DOI: 10.17632/h5rhk9554m
title: Supplemental Methods

description: Supplemental Methods for "SCAR-ed by Antibiotics: A retrospective cohort study of severe cutaneous adverse reactions (SCAR) relative risk".
DOI: 10.6084/m9.figshare.20075990.v1
title: Iris dataset PEDOT reservoir computing

description: output matrix of the reservoir used in https://www.science.org/doi/full/10.1126/sciadv.abh0693
DOI: 10.6084/m9.figshare.5439382.v1
title: Plling et al. 2017 UKB parents attained age GWAS

description: Analysis of genotypes associated with parents attained age (lifespan) in the UK Biobank. <br><br>Results are from BOLT-LMM software, adjusted for age, sex, assessment centre and array type.<br>
DOI: 10.17632/cg463wxpw7
title: Hydrochlorothiazide use and the risk of skin cancer in patients with hypertensive disorder: a nationwide retrospective cohort study from Korea

description: Supplementary Table I provides 10th revision of International Classification of Diseases (ICD-10) codes for skin cancers and other diseases in using inclusion and exclusion criteria. Supplementary Table II described in detail the drugs for photosensitizing drugs and other drugs potentially affecting skin cancer.
DOI: 10.6084/m9.figshare.19319885.v1
title: Yap live imaging

description: E8.0 Yap live reporter embryo was captured with 4×90 degrees of rotation. E8.5 and E9.5 Yap live reporter embryos each was captured with 4 tiles scanning (5% overlap).
DOI: 10.6084/m9.figshare.25393636.v3
title: Data and code for "<b>Urban environments increase generalization of hummingbird-plant networks across climate gradients</b>"

description: We compiled a dataset of 103 quantitative hummingbird-plant interaction networks distributed from Mexico to Southern Brazil, comprising 176 hummingbird and 1180 plant species.Here, we provide the raw network data for the 36 urban area networks that was compiled for this study, as well as network indices, climate and community predictors used in the manuscript. We also provide the R script for the analyses conducted in our manuscript.Urban networks were characterized by the presence of built structures associated with denser human settlements, and needed to: (1) include all flowering plants (native and non-native) known to be visited (or potentially visited) by hummingbirds in the study area, (2) sampling should cover at least one annual cycle (all seasons sampled) and (3) the urban area sampled should cover at least one hectare (100x100 m). Each network represented an ecological community, summarizing interaction frequencies between pairs of hummingbird and plant species. We only included legitimate interactions in our dataset, in which hummingbirds inserted their bill to drink nectar while touching the reproductive structures, thereby potentially acting as pollinators, and characterizing mutualistic interactions.The 67 natural area networks were extracted from Dalsgaard et al. 2021, Functional Ecology (https://doi.org/10.1111/1365-2435.13784) which reported 93 interaction networks from natural habitats across mainland America and islands. We only used data from the mainland networks, as we lacked urban networks from islands. In addition, considering that urban development reflects cultural, socioeconomic, and historical drivers specific to each country/region, we limited the data on the natural habitats to the subset of mainland networks located in the same countries where the urban networks were also sampled (i.e., Mexico, Costa Rica, Colombia, and Brazil). Data from Dalsgaard et al. 2021 can be accessed at: https://datadryad.org/stash/dataset/doi:10.5061/dryad.rr4xgxd7n--------Rscript organized by João Custódio CardosoRscript by João Custódio Cardoso and Jesper SonneData curation: Pietro Maruyama, Camila BosenbeckerValidation: Caio Ballarin<br>
DOI: 10.17632/j6mxjvwsgk
title: Data for: Dataset of knowledge, attitude, practices and Psychological Implications of Healthcare Workers in Pakistan during COVID-19 pandemic

description: The dataset presented in this survey is an examination of COVID-19 related knowledge, attitude, practices and their impact on the mental health of healthcare workers. The data were collected through a survey distributed via an online questionnaire, assessing sociodemographic characteristics (6 items), knowledge (11 items), perception (5 items), practice (6 items), information sources (1 item) and psychological implications (12 items), disseminated by using a snowball sampling technique.
DOI: 10.6084/m9.figshare.7878137.v2
title: Detailed parameters of a 30-node case

description: Detailed parameters of a 30-node case<br>
DOI: 10.17632/ktr99fc826
title: Loay & Maha Stamps Dataset

description: Recently, with the continuous evolution of new technology the world has faced unusual growth of multimedia data especially in document images. Huge quantities of documents are created and used in many important official organizations. The stamps assure the authenticity of the documents contents. The general objective of this dataset is enabling researchers in the field of pattern recognition to analyze, detect, localize and recognize different types of stamps. The size of the dataset is 48.9 MB. It contains a total of 1557 color stamps samples which are stored as BMP image format. The images of stamps were acquired from documents using a scanner and mobile camera. The cropping process was applied to capture only the stamp area of the whole document, using three applications which are paint, snip and sketch software. For each cropped stamp, eight stamp images are produced from rotating the original one at different angles clockwise. Rotation starts from 5 degrees and increases by 5 degrees until it reaches to 40 degrees. Note the orientation of the original stamp image is with the horizon line, which means that it is at an angle of zero. The stamps have different size, shape, complexity, position, directions and colors. For example, there are six categories of stamp shapes arranged as circle, oval, square, rectangular, triangular and some other irregular shapes. Its worth to mention that the collected dataset may be degraded in quality and resolution and the stamp can be located on a relatively complex background. The dataset was collected from various sources, including official documents from Iraqi educational institutions, documents from syndicates such as teachers, engineers, doctors, pharmacists, Iraqi hospitals, provincial councils, and most Iraqi institutions. The dataset also contains some stamps from other Arab countries.
DOI: 10.17632/zv7z32rd9z
title: Research data on "Bayesian estimation of stochastic metafrontiers".

description: This publication contains the code and data used in the paper "Bayesian estimation of stochastic metafrontiers". Specifically:

1. Data on Chilean hydroelectric power plants (plants.xls)

2. R code for estimating the model using simulated data (simulation.R)

3. R code for estimating the model using the Chilean hydroelectric power plants data (Chilean hydroelectric power plants.R)

4. R code for estimating the model using the German dairy farms data (German dairy farms.R)
DOI: 10.6084/m9.figshare.22332667.v1
title: Visium

description: <strong>Single-cell data for deconvolution (Visium)</strong>
DOI: 10.17632/bftvxjkg4g
title: Data for: A Toxicological Study on Photo-degradation Products of Environmental Ibuprofen: Ecological and Human Health Implications

description: The Excel file contains raw data for toxicological assays using three gut microbiota species, Lactobacillus acidophilus, Enterococcus faecalis and Escherichia coli, and two human cell lines, HEK293T and HepG2. This file also contains data for the bioluminescence bacterium, Vibrio fischeri.
DOI: 10.6084/m9.figshare.942383.v1
title: Data Experiment 2

description: IVs are Distractor Face (Friend, Self, Unfamiliar), Target Name (Friend, Self, Unfamiliar) and Visual Field Presentation (Bilateral, LVF, RVF). All IVs are repeated-measures. The DV is reaction time (RT) for correct responses, measured in ms. Incorrect responses accounted for 10.6% of the data, and were removed prior to analysis (i.e. data presented here are for correct responses). For each participant, RT’s more than two standard deviations away from that participant’s mean were removed as outliers; these accounted for 14.2% of trials. Data presented here do not include these trials. Variables are labelled as follows: Distractor Face F = Friend S = Self U = Unfamiliar Target Name F = Friend S = Self U = Unfamiliar Visual Field Presentation B = Bilateral L = LVF R = RVF For example, the variable labelled “FSL” contains the average reaction time to respond a name when the Distractor Face presented was of a Friend, the Target Name to be responded to was the participant’s own name and the distractor image was displayed in the LVF.
DOI: 10.6084/m9.figshare.1528305.v8
title: Computational characterization of Cu(I)-catalyzed reactions - geometry optimizations.

description: Optimization: inputs and outputs. Computations were performed using Firefly 8.0 (Alex Granovsky http://classic.chem.msu.su/gran/firefly/index.html) Excel table and coordinates in .xyz format are available at dx.doi.org/10.6084/m9.figshare.2073322
DOI: 10.6084/m9.figshare.28928522.v1
title: Plot-Level Leaf Equivalent Water Thickness (EWT) and Leaf Area Index (LAI) Measurements (2003–2021) at the Eastern Nebraska Research and Extension Center (ENREC), Mead, NE, USA

description: This dataset contains long-term plot-level measurements of <b>Leaf Equivalent Water Thickness (EWT)</b> and <b>Leaf Area Index (LAI)</b> collected from 2003 to 2021 at the <b>University of Nebraska–Lincoln's Eastern Nebraska Research and Extension Center (ENREC)</b> in <b>Mead, Nebraska, USA</b>. These biophysical parameters were measured across multiple field plots under different crop and management conditions, providing insight into plant water status and canopy structure over time.EWT was derived using destructive leaf sampling and lab-based gravimetric analysis, while LAI was collected using optical sensors (e.g., LAI-2000) and validated with direct methods where applicable. These data support research on <b>precision agriculture, crop modeling, remote sensing validation, and ecohydrological studies</b>, particularly under varying irrigation and climate scenarios.
DOI: 10.17632/cv9cfj39b7
title: Syringe Pump Extruder and Curing System for 3D Printing of Photopolymers

description: Development of new additive manufacturing materials often requires the production of several batches of relatively large volumes in order to print and test objects. This can be difficult for many materials that are expensive or difficult to produce in large volumes on the laboratory scale. Bioprinter systems are advantageous in this regard, however, commercial systems are expensive or do not have the ability to use photopolymers. Herein, we outline a Syringe Pump Extruder and Curing System (SPECS) modification for inexpensive filament-based 3D printers which enables the use of standard bioplotter materials and photopolymers. The system is capable of using multiple syringe volumes and needle sizes that can be quickly and easily exchanged. The SPECS modification is demonstrated using a Prusa i3 mk3 fused filament fabrication printer to print several 3D objects and films using stereolithography (SLA) photopolymer resin. Geometric accuracy in the X, Y, and Z directions was ±0.1 mm using a 5 mL syringe, 22-gauge needle, and commercial SLA resin. The SPECS system could be of great benefit for laboratories pursing material development in the area of additive manufacturing. This repository includes diagrams, assembly instructions, STL models of components to be 3D printed, a configuration file for the slicing software used in this conversion, and a full CAD model of the system outlined in the HardwareX submission.
DOI: 10.4121/uuid:2d3f5d49-9e45-45eb-9d5d-c09f532b9ad1
title: Consequences of workplace bullying

description: In this research, we wanted to explore the effect of workplace bullying on strain. Specifically, we examine its influence on emotional exhaustion and social undermining at home.
DOI: 10.6084/m9.figshare.20060201.v1
title: Benchmark study of feature selection strategies for multi-omics data

description: These data sets are the pre-processed versions of the multi-omics data sets used in the benchmark study presented in the paper "Benchmark study of feature selection strategies for multi-omics data" by Yingxia Li, Ulrich Mansmann, Shangming Du, and Roman Hornung. The outcome feature is "TP53_mutation" in each data set, where "1" / "0" indicates the presence / absence of a TP53 mutation in the respective patients. The remaining features are clinical and omics features, where the suffix "_clinical" indicates clinical features, the suffix "_cnv" copy number variation features, the suffix "_mirna" miRNA features, the suffix "_mutation" mutation features, and the suffix " _rna" RNA features. Note that while predicting the outcome feature TP53 yes vs. no is not meaningful contextually, TP53 mutations have been found to be associated with poor clinical outcomes in cancer patients [1]. Against this background, TP53 can be used as a surrogate for a phenotypic outcome. Thus, these data sets are meant for testing machine learning or statistical procedures, they may not be useful for biological analysis.
DOI: 10.6084/m9.figshare.29093648.v2
title: Toy dataset and R code for GbNEA

description: This repository contains the toy dataset and R code that was used in analyses in paper titled "Gene behaviors-based network enrichment analysis and its application to reveal immune disease pathways enriched with COVID-19 severity specific gene networks".<br>