cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24097941.v1
title: Transcriptome data of samples from two <i>Gossypium barbadense</i> varieties before and after <i>Verticillium dahliae</i> inoculation

description: This is the original transcriptome data of 24 <i>Gossypium barbadense</i> samples under different time points of <i>Verticillium dahliae</i> treatment.File1 contains the read counts and the expression level of each gene.File2 contains all DEGs between the BR and BS varieties before <i>Verticillium dahliae</i> infection.File3 and File4 contain the GO enrichment analysis results for DEGs from File2.File5 contains the DEGs of BR and BS varieties under different time points of <i>Verticillium dahliae</i> treatment.File6 contains the DEGs induced by Verticillium dahliae which are used for GO analysis.File7 and File8 contain the GO enrichment analysis results for DEGs from File6.<br>
DOI: 10.6084/m9.figshare.24097941.v2
title: Transcriptome data of samples from two <i>Gossypium barbadense</i> varieties before and after <i>Verticillium dahliae</i> inoculation

description: This is the original transcriptome data of 24 <i>Gossypium barbadense</i> samples under different time points of <i>Verticillium dahliae</i> treatment.File1 is the breakdown of each sample file on GSA.File2 contains the read counts and the expression level of each gene.File3 contains all DEGs between the BR and BS varieties before <i>Verticillium dahliae</i> infection.File4 and File5 contain the GO enrichment analysis results for DEGs from File2.File6 contains the DEGs of BR and BS varieties under different time points of <i>Verticillium dahliae</i> treatment.File7 contains the DEGs induced by Verticillium dahliae which are used for GO analysis.File8 and File9 contain the GO enrichment analysis results for DEGs from File7.<br>
DOI: 10.5281/zenodo.10259830
title: Net load profile for a 10 MWh hydrogen storage system

description: Subject: Energy
Specific subject area: Hydrogen Storage Modelling
Data format: Raw
Data source: Simulation  
Data format: Table
Type of data: Timeseries 
Date format: YYYY-MM-GG hh:mm:ss
Resolution: 1 hour
Units: Watt [W]
 
Description
This dataset encompasses 102 net-load, each serving as a guide for either charging or discharging a hydrogen energy storage system with a 0.4 roundtrip efficiency. These profiles correspond to a variety of power energy services.
Two primary characteristics distinguish each power energy service in the dataset:

The length of the discharge period refers to the duration over which the stored energy is released.
The number of charge/discharge cycles within a year indicates how often the service is delivered.
Although these characteristics vary among the different services, the energy fed to the storage remains constant at 10 MWh per cycle. The unique aspect is the rate at which this stored energy is delivered to fulfill varying power demands, which differs according to each service's specific profile.
In terms of interpreting the net-load profiles:

A positive value in a profile signifies a phase of charging, indicating that excess generation is being stored.
A negative value, on the other hand, denotes a discharge phase, where the storage system delivers a power energy service.
DOI: 10.5281/zenodo.10259831
title: Net load profile for a 10 MWh hydrogen storage system

description: Subject: Energy
Specific subject area: Hydrogen Storage Modelling
Data format: Raw
Data source: Simulation  
Data format: Table
Type of data: Timeseries 
Date format: YYYY-MM-GG hh:mm:ss
Resolution: 1 hour
Units: Watt [W]
 
Description
This dataset encompasses 102 net-load, each serving as a guide for either charging or discharging a hydrogen energy storage system with a 0.4 roundtrip efficiency. These profiles correspond to a variety of power energy services.
Two primary characteristics distinguish each power energy service in the dataset:

The length of the discharge period refers to the duration over which the stored energy is released.
The number of charge/discharge cycles within a year indicates how often the service is delivered.
Although these characteristics vary among the different services, the energy fed to the storage remains constant at 10 MWh per cycle. The unique aspect is the rate at which this stored energy is delivered to fulfill varying power demands, which differs according to each service's specific profile.
In terms of interpreting the net-load profiles:

A positive value in a profile signifies a phase of charging, indicating that excess generation is being stored.
A negative value, on the other hand, denotes a discharge phase, where the storage system delivers a power energy service.
DOI: 10.5281/zenodo.7828162
title: tFood: Semantic Table Annotations Benchmark for Food Domain

description: tFood is a dataset for tabular data to knowledge graph matching. It is derived for the Food domain and has two types of tables. On the one hand, Horizontal Relational Tables are where each table represents a collection of entities. On the other hand, Entity Tables are where each of which represents a single entity. We supported ground truth data from Wikidata as a target knowledge graph (KG).


The supported tasks for semantic table annotations are: 



	
Topic Detection (TD) links the entire table to an entity or a class from the target KG.
	
Cell Entity Annotation (CEA) maps individual table cells to entities from the target KG.
	
Column Type Annotation (CTA) links individual table columns to classes from the target KG.
	
Column Property Annotation (CPA) detects the relations between column pairs from the target knowledge graph.



This dataset version will be used during SemTab 2023 - Round 1. So, the ground truth data for the test set is currently hidden. We will add such ground truth after the conclusion of the challenge. 


 


 
description: Ground truth for testing data (Entity and Horizontal) tables have been added.
DOI: 10.34740/kaggle/dsv/7146810
title: RTRS Brazil Database 2023
DOI: 10.5281/zenodo.10283416
title: Magnetic properties and chemical analysis of remagnetised carbonates of South America

description: We investigate the magnetic properties and chemical composition of remagnetised carbonate rocks in South America. These rocks play a crucial role in understanding past climates and the behaviour of Earth's magnetic field. Unfortunately, the primary remanence of these rocks is often altered by secondary components in a process known as remagnetisation. In South America, we observe evidence of a continent-wide remagnetisation event in Neoproterozoic carbonates from sedimentary basins separated by significant distances. To shed further light on this phenomenon, we employ both traditional macroscopic rock magnetic analysis and advanced synchrotron-based nano/micro imaging and chemical analysis techniques.
DOI: 10.6084/m9.figshare.24763812
title: <i>A Comparative Study of SAR-CoV-2 Detection using RT-PCR based Testing from a Nasopharyngeal swab versus indwelling tracheostomy in Patients With a TracheostomyComparative Study of SAR-CoV-2 Detection using RT-PCR based Testing from a Nasopharyngeal swab versus indwelling tracheostomy in Patients With a Tracheostomy</i> data

description: BACKGROUND Nasopharyngeal swab RT-PCR is the standard procedure for COVID-19 testing. In patients with a tracheostomy with an altered airway that bypasses the nasopharynx, the yield of samples from different sites are unknown.METHODS This study is a prospective cross-sectional study. The nasopharyngeal swabs and tracheal secretion samples were collected from 100 patients with a non-plugging tracheostomy tube at Thammasat University Hospital, Pathum Thani, Thailand. The participants were aged between 1-96 years old for screening purposes during the height of the pandemic. The detection result and cycle threshold (Ct) value from each site were analyzed using McNemar’s test with a 95% confidence interval. RESULTS Four participants had positive results. One patient tested positive only for the nasopharyngeal swab, while the other tested positive only for the tracheal secretion sample. No statistically significant difference was found among the discordant and concordant groups (p = 1).DISCUSSION Nasopharyngeal swab RT-PCR is the gold standard in diagnosing COVID-19. The accuracy of screening is therefore instrumental in disease control; however, in patients with a tracheostomy whose altered airway bypasses the nasopharynx, the yield of samples from this has yet to be elucidated. We found two discordant results among four positive cases from 100 patients. One patient tested positive only from the nasopharyngeal swab, while the other tested positive only from the tracheal sample. The percent of agreement was 98, and the Kappa coefficient value was 65.64% (p-value &lt;0.001). According to these results, one sample from the nasopharynx or tracheal tube should be sufficient to determine the infection status in low-risk patients. Meanwhile, for highly suspicious cases, multiple-site sampling should be utilized. CONCLUSIONThis study showed discordance of COVID-19 RT-PCR screening results using sampling from nasopharyngeal swabs and tracheal secretions in tracheotomized patients. Multiple-site sample is suggested in highly suspicious patients with a tracheostomy
DOI: 10.6084/m9.figshare.24763812.v1
title: <i>A Comparative Study of SAR-CoV-2 Detection using RT-PCR based Testing from a Nasopharyngeal swab versus indwelling tracheostomy in Patients With a TracheostomyComparative Study of SAR-CoV-2 Detection using RT-PCR based Testing from a Nasopharyngeal swab versus indwelling tracheostomy in Patients With a Tracheostomy</i> data

description: BACKGROUND Nasopharyngeal swab RT-PCR is the standard procedure for COVID-19 testing. In patients with a tracheostomy with an altered airway that bypasses the nasopharynx, the yield of samples from different sites are unknown.METHODS This study is a prospective cross-sectional study. The nasopharyngeal swabs and tracheal secretion samples were collected from 100 patients with a non-plugging tracheostomy tube at Thammasat University Hospital, Pathum Thani, Thailand. The participants were aged between 1-96 years old for screening purposes during the height of the pandemic. The detection result and cycle threshold (Ct) value from each site were analyzed using McNemar’s test with a 95% confidence interval. RESULTS Four participants had positive results. One patient tested positive only for the nasopharyngeal swab, while the other tested positive only for the tracheal secretion sample. No statistically significant difference was found among the discordant and concordant groups (p = 1).DISCUSSION Nasopharyngeal swab RT-PCR is the gold standard in diagnosing COVID-19. The accuracy of screening is therefore instrumental in disease control; however, in patients with a tracheostomy whose altered airway bypasses the nasopharynx, the yield of samples from this has yet to be elucidated. We found two discordant results among four positive cases from 100 patients. One patient tested positive only from the nasopharyngeal swab, while the other tested positive only from the tracheal sample. The percent of agreement was 98, and the Kappa coefficient value was 65.64% (p-value &lt;0.001). According to these results, one sample from the nasopharynx or tracheal tube should be sufficient to determine the infection status in low-risk patients. Meanwhile, for highly suspicious cases, multiple-site sampling should be utilized. CONCLUSIONThis study showed discordance of COVID-19 RT-PCR screening results using sampling from nasopharyngeal swabs and tracheal secretions in tracheotomized patients. Multiple-site sample is suggested in highly suspicious patients with a tracheostomy
DOI: 10.11588/data/e0macr
title: Complex irradiation history of chondrules and matrix – a study of CR2 and some other meteorites - Tables 1-6

description: Excesses of cosmic-ray produced nuclei in individual components of meteorites indicate “pre-irradiation”, either in the surface region of their parent bodies (PBs) or as free-floating small particles in the early Solar System (ESS), and several cases of pre-irradiation of chondrules have been inferred in previous studies. We expand on our earlier work (Beyersdorf-Kuis et al., 2015) and report a study of cosmic-ray produced He and Ne in chondrules and “matrix” material of several CR2 and CV meteorites as well as the highly primitive, unique, carbonaceous chondrite Acfer 094. In order to avoid artifacts in the interpretation due to poorly known target element abundances in the analyzed material, we performed instrumental neutron activation analysis (INAA) on the very samples subsequently used for noble gas analysis. In accordance with previous work, no evidence for pre-irradiation was found for CV3 Allende, while for CV3 Vigarano evidence for pre-irradiation is marginal at best. Chondrules from Acfer 082 (CV) exhibit both excesses and deficits relative to matrix, which points to pre-irradiation of not only chondrules, but also matrix material. A similar case may be Renazzo (CR2), where, however, the identification is complicated by the presence of abundant pre-solar Ne-E. A large number of chondrules (ten) were studied from CR2 El Djouf 001, which yielded slightly variable, small but consistent, excesses relative to matrix, corresponding to “nominal” (i.e., irradiation by galactic cosmic rays in 4 Pi geometry) excess ages of 1 to 2 Ma. Modelling based on cosmogenic 22Ne/21Ne suggest contributions from irradiation in the parent body regolith by SCR as well as GCR, where the latter dominates. The individual contributions are difficult to quantify, but variations of the GCR component may be the major cause of the variations in nominal CRE ages. Very large excesses - corresponding to nominal excess exposure ages &gt;30 Ma - were found in two chondrules from the solar-wind-rich CR2 NWA 852, in agreement with reports in the literature. The case shows similarity to El Djouf 001 except for the much larger size of the effects, and the situation may be common among meteorites with a regolith origin. With independent information on the CRE age, SCR and GCR parent body contributions may be disentangled, providing constraints on regolith dynamics. Reevaluating the large variations previously identified in chondrules from QUE 99177 we suggest either a very different regolith history compared to that of El Djouf 001 or, more likely, pre-irradiation in the ESS as suggested by Beyersdorf et al. (2015). The single chondrule from unique Acfer 094 that we studied has a cosmic ray exposure indistinguishable from the one we found for matrix material.
DOI: 10.5281/zenodo.10284049
title: Data on heat tolerance for D latus from: Does plasticity in thermal tolerance trade off with inherent tolerance? The influence of setal tracheal gills on thermal tolerance and its plasticity in a group of European diving beetles

description: Dataset on heat tolerance used in the study by Verberk et al., (2018).
Method description
We assessed the impact of mode of respiration on heat tolerance under different oxygen conditions in one of the 15 species: D. latus, the most tolerant species in our comparison, using previously described methods (Verberk and Calosi, 2012, Verberk and Bilton, 2015). Briefly, individuals were placed in flow-through chambers, whose water supply could be heated. For one group of animals, we used chambers where the animals were completely submerged and had no access to air, while for a second group of animals chambers were used with a small head space holding a layer of air, meaning that these animals could obtain oxygen either from the air compartment by surfacing or from the water with oxygen diffusing directly into their tracheal system via the setae or oxygen diffusing into their subelytral air reservoir via their physical gill. Individuals were left to settle for 1 h at the equilibration temperature of 10 °C, after which the temperature was ramped up at 0.25 °C min−1. The CTmax was defined as the point at which animals lost coordinated swimming, hence losing their ability to escape from the conditions that will lead to their death (Lutterschmidt and Hutchison, 1997). The heating rate, endpoint and starting temperature all therefore differed from the methodology described above, meaning that the critical thermal temperatures from both methods cannot be compared directly. CTmax was assessed under normoxia, hypoxia and hyperoxia conditions (5, 20, 60 kPa O2 respectively) and adults were assessed with and without access to air. Oxygen tension of both the water and the air in the headspace was altered to produce hypoxia and hyperoxia, as described by Verberk and Bilton (2015).
DOI: 10.5281/zenodo.10284048
title: Data on heat tolerance for D latus from: Does plasticity in thermal tolerance trade off with inherent tolerance? The influence of setal tracheal gills on thermal tolerance and its plasticity in a group of European diving beetles

description: Dataset on heat tolerance used in the study by Verberk et al., (2018).
Method description
We assessed the impact of mode of respiration on heat tolerance under different oxygen conditions in one of the 15 species: D. latus, the most tolerant species in our comparison, using previously described methods (Verberk and Calosi, 2012, Verberk and Bilton, 2015). Briefly, individuals were placed in flow-through chambers, whose water supply could be heated. For one group of animals, we used chambers where the animals were completely submerged and had no access to air, while for a second group of animals chambers were used with a small head space holding a layer of air, meaning that these animals could obtain oxygen either from the air compartment by surfacing or from the water with oxygen diffusing directly into their tracheal system via the setae or oxygen diffusing into their subelytral air reservoir via their physical gill. Individuals were left to settle for 1 h at the equilibration temperature of 10 °C, after which the temperature was ramped up at 0.25 °C min−1. The CTmax was defined as the point at which animals lost coordinated swimming, hence losing their ability to escape from the conditions that will lead to their death (Lutterschmidt and Hutchison, 1997). The heating rate, endpoint and starting temperature all therefore differed from the methodology described above, meaning that the critical thermal temperatures from both methods cannot be compared directly. CTmax was assessed under normoxia, hypoxia and hyperoxia conditions (5, 20, 60 kPa O2 respectively) and adults were assessed with and without access to air. Oxygen tension of both the water and the air in the headspace was altered to produce hypoxia and hyperoxia, as described by Verberk and Bilton (2015).
DOI: 10.6073/pasta/959e8d345a85b0fd7810d9ab1303896f
title: Thresholds and Regime Shifts at Four LTER Sites (CCE, JRN, PAL, SBC) 1951-2009

description: The existence and causes of abrupt transitions, thresholds, or regime shifts between ecosystem states is of great concern because the likelihood of such transitions is predicted to increase. The science for measuring and responding to state changes, however, is not well developed. This limitation stems from a lack of data-supported case studies of abrupt transitions in all but a few well-studied ecosystems. We used 30-60 years of data on biological responses and putative drivers from ocean, coastal, polar, and dryland ecosystems to illustrate general approaches to analysis of abrupt transitions. The analyses indicate one case in which the state or response variable (krill abundance) tracked abrupt changes in the driver (Pacific Decadal Oscillation) in a linear fashion. Response variables in other cases (sea cucumber abundance, penguin abundance, and perennial grass production) exhibited hysteretic relationships to drivers (wave intensity, sea ice duration, and monsoonal rainfall amounts, respectively) through a variety of response mechanisms. The analyses illustrate that 1) a suite of common concepts and approaches can be used across disparate systems, 2) there are generally insufficient data for the use of leading indicators, particularly considering the abruptness of transition relative to the lifespan of long-lived organisms, 3) information on spatiotemporal context is useful for comparing transitions in similar systems, and 4) ancillary information from associated experiments and observations is critical for interpreting response-driver relationships.
DOI: 10.34740/kaggle/dsv/7146975
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.10284093
title: Surface vorticity, convergence and surface miced layer depth from one-year LLC4320 simulation
DOI: 10.5281/zenodo.10284092
title: Surface vorticity, convergence and surface miced layer depth from one-year LLC4320 simulation
DOI: 10.57745/jbdz1y
title: PhenoAsreml.txt

description: :unav
DOI: 10.57745/tuf5f1
title: BEDERE_2023_ASREMLScript_bivariate_3x3strata.asr

description: :unav
DOI: 10.57745/juttbh
title: PhenoAsreml_scaledLong.txt

description: :unav
DOI: 10.57745/ilemdl
title: BEDERE_2023_ASREMLScript_bivariate_3x2strata.pvc

description: :unav
DOI: 10.57745/xy0feb
title: BEDERE_2023_ASREMLScript_bivariate_3x3strata.as

description: :unav
DOI: 10.5281/zenodo.10283373
title: Analysis of bacteria, inflammation, and exudation in epidermal suction blister wounds reveals dynamic changes during wound healing - Dataset

description: Dataset for "Analysis of bacteria, inflammation, and exudation in epidermal suction blister wounds reveals dynamic changes during wound healing". Data were generated from samples collected to a biobank from suction blister wounds at various timepoints during a clinical trial (NCT05378997). Data include concentration of bacteria in swab and dressing fluid samples, neutrophil proteins (HNE, MPO, and HBP), cytokines (IFN-gamma, interleukin IL-1beta, IL-2, IL-4, IL-6, IL-8, IL-10, IL-12p70, IL-13, TNF-alpha) and total protein measured in dressing fluid samples, and bacterial species identified by MALDI-TOF in swab and dressing fluid samples.
DOI: 10.57745/jhafc7
title: BEDERE_2023_ASREMLScript_bivariate_3x2strata.asr

description: :unav
DOI: 10.5281/zenodo.10283372
title: Analysis of bacteria, inflammation, and exudation in epidermal suction blister wounds reveals dynamic changes during wound healing - Dataset

description: Dataset for "Analysis of bacteria, inflammation, and exudation in epidermal suction blister wounds reveals dynamic changes during wound healing". Data were generated from samples collected to a biobank from suction blister wounds at various timepoints during a clinical trial (NCT05378997). Data include concentration of bacteria in swab and dressing fluid samples, neutrophil proteins (HNE, MPO, and HBP), cytokines (IFN-gamma, interleukin IL-1beta, IL-2, IL-4, IL-6, IL-8, IL-10, IL-12p70, IL-13, TNF-alpha) and total protein measured in dressing fluid samples, and bacterial species identified by MALDI-TOF in swab and dressing fluid samples.
DOI: 10.57745/88jmgp
title: BEDERE_2023_ASREMLScript_bivariate_3x2strata.as

description: :unav
DOI: 10.57745/zuh5cf
title: BEDERE_2023_ASREMLScript_bivariate_3x2strata.res

description: :unav
DOI: 10.57745/nq9prn
title: BEDERE_2023_RScript_BartlettTest.R

description: :unav
DOI: 10.57745/s912t8
title: BEDERE_2023_ASREMLScript_bivariate_2x2strata.res

description: :unav
DOI: 10.57745/xfpryo
title: BEDERE_2023_ASREMLScript_bivariate_2x2strata.asr

description: :unav
DOI: 10.57745/a2mdnb
title: BEDERE_2023_RScript_handlingdata_Long.R

description: :unav
DOI: 10.57745/ie2jjs
title: PhenoAsreml_scaledLong_3x2strata.txt

description: :unav
DOI: 10.57745/rglnnr
title: BEDERE_2023_ReadMe.txt

description: :unav
DOI: 10.57745/1azyry
title: PhenoAsreml_scaled.txt

description: :unav
DOI: 10.57745/gqw4wr
title: PhenoAsreml_scaledLong_3x3strata.txt

description: :unav
DOI: 10.57745/sx3g3w
title: BEDERE_2023_Data_PedigreeHens.txt

description: :unav
DOI: 10.57745/b1omu8
title: BEDERE_2023_ASREMLScript_bivariate_2x2strata.pvc

description: :unav
DOI: 10.57745/a2umza
title: BEDERE_2023_ASREMLScript_bivariate_2x2strata.as

description: :unav
DOI: 10.57745/5njsdz
title: BEDERE_2023_ASREMLScript_bivariate_3x3strata.res

description: :unav