cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1133189.10fu
title: SH1133189.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1133193.10fu
title: SH1133193.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1133194.10fu
title: SH1133194.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1133196.10fu
title: SH1133196.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.c.3684325_d2
title: Additional file 1: Table S1-S5. of Whole-genome sequencing of a Plasmodium vivax clinical isolate exhibits geographical characteristics and high genetic variation in China-Myanmar border area

description: Table S1. 33,616 of 125,142 SNPs in the coding region of 4,145 genes on 14 chromosomes. Table S2. 42-SNP barcode marker that identifies genomic signatures. Table S3. 539 of the 125,142 variable positions showed the consistency of the geographic distribution. Table S4. De novo assembly summary statistics of the Plasmodium vivax CMB-1 genome. Table S5. Average SNPs per base (%) of 1,826 genes with at least 5 SNPs. (XLSX 2120 kb)
DOI: 10.6084/m9.figshare.c.3684328_d1
title: Additional file 2: Table S1. of Analysis of small RNAs revealed differential expressions during pollen and embryo sac development in autotetraploid rice

description: Main agronomic traits of autotetraploid (02428-4x) and diploid (02428-2x) rice. Table S2. Frequencies of pollen fertility and embryo sac fertility in 02428-4x and 02428-2x. Table S3. The development of pollen and embryo sac in 02428-2x and 02428-4x. Table S4. Frequency of abnormalities in autotetraploid and diploid rice during the pollen development. Table S5. Observations of chromosome behavior and configurations between autotetraploid rice and diploid rice. Table S6. Summary of the known and predicted miRNAs in 02428-4x and 02428-2x. Table S7. miRNAs detected during pollen and embryo sac development of 02428-4x and 02428-2x. Table S8. The specific miRNAs found in each library (Development stages). (XLSX 214Â kb)
DOI: 10.6084/m9.figshare.c.3684328_d1.v1
title: Additional file 2: Table S1. of Analysis of small RNAs revealed differential expressions during pollen and embryo sac development in autotetraploid rice

description: Main agronomic traits of autotetraploid (02428-4x) and diploid (02428-2x) rice. Table S2. Frequencies of pollen fertility and embryo sac fertility in 02428-4x and 02428-2x. Table S3. The development of pollen and embryo sac in 02428-2x and 02428-4x. Table S4. Frequency of abnormalities in autotetraploid and diploid rice during the pollen development. Table S5. Observations of chromosome behavior and configurations between autotetraploid rice and diploid rice. Table S6. Summary of the known and predicted miRNAs in 02428-4x and 02428-2x. Table S7. miRNAs detected during pollen and embryo sac development of 02428-4x and 02428-2x. Table S8. The specific miRNAs found in each library (Development stages). (XLSX 214Â kb)
DOI: 10.6084/m9.figshare.c.3684292_d8.v1
title: Additional file 6: Table S7. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: Exonic Intron-1st & 2nd datasets. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3684292_d7.v1
title: Additional file 7: of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: GFF annotation. V. dahliae genome annotation_additional UTRs and Exonic intron_for AS analysis. (ZIP 1332 kb)
DOI: 10.6084/m9.figshare.c.3684292_d8
title: Additional file 6: Table S7. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: Exonic Intron-1st & 2nd datasets. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3684292_d7
title: Additional file 7: of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: GFF annotation. V. dahliae genome annotation_additional UTRs and Exonic intron_for AS analysis. (ZIP 1332 kb)
DOI: 10.15468/dl.k4pvka
title: Occurrence Download

description: A dataset containing 6348 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleurozia Dumort."
 ]
}

 The dataset includes 6348 records from 141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035929-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3684292_d5.v1
title: Additional file 5: Table S6. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: Potential IR-induced PTCs for non-sense mediated decay. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3684292_d4.v1
title: Additional file 3: Table S4. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: IntronR-1st dataset. (XLSX 125 kb)
DOI: 10.6084/m9.figshare.c.3684292_d5
title: Additional file 5: Table S6. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: Potential IR-induced PTCs for non-sense mediated decay. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3684292_d4
title: Additional file 3: Table S4. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: IntronR-1st dataset. (XLSX 125 kb)
DOI: 10.6084/m9.figshare.c.3684292_d3.v1
title: Additional file 4: Table S5. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

description: IntronR-2nd dataset. (XLSX 203 kb)
DOI: 10.6084/m9.figshare.c.3683077_d2
title: Additional file 2: of Sex and age differences in the expression of liver microRNAs during the life span of F344 rats

description: 214 miRNAs differentially expressed by age and/or sex. Each miRNA is shown as differentially expressed by age, sex, or both age and sex, along with the k-means cluster number from Fig.Â 2 and chromosome mapping position. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3683077_d2.v1
title: Additional file 2: of Sex and age differences in the expression of liver microRNAs during the life span of F344 rats

description: 214 miRNAs differentially expressed by age and/or sex. Each miRNA is shown as differentially expressed by age, sex, or both age and sex, along with the k-means cluster number from Fig.Â 2 and chromosome mapping position. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3683077_d1
title: Additional file 3: of Sex and age differences in the expression of liver microRNAs during the life span of F344 rats

description: Age-related differences in miRNA expression. Identification of miRNAs in Venn diagrams in Fig.Â 5. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3683077_d1.v1
title: Additional file 3: of Sex and age differences in the expression of liver microRNAs during the life span of F344 rats

description: Age-related differences in miRNA expression. Identification of miRNAs in Venn diagrams in Fig.Â 5. (XLSX 26Â kb)
DOI: 10.15468/dl.aw8erk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gadus gracilis Tilesius, 1810",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035931-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3681919_d2
title: Additional file 2: of Biomechanical comparison of multilevel lateral interbody fusion with and without supplementary instrumentation: a three-dimensional finite element study

description: Original data of endplate stress for each LLIF construct in different motions. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3681919_d2.v1
title: Additional file 2: of Biomechanical comparison of multilevel lateral interbody fusion with and without supplementary instrumentation: a three-dimensional finite element study

description: Original data of endplate stress for each LLIF construct in different motions. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3681919_d1
title: Additional file 1: of Biomechanical comparison of multilevel lateral interbody fusion with and without supplementary instrumentation: a three-dimensional finite element study

description: Original data of ROM for each LLIF construct with different supplemental instrumentation. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.c.3681919_d1.v1
title: Additional file 1: of Biomechanical comparison of multilevel lateral interbody fusion with and without supplementary instrumentation: a three-dimensional finite element study

description: Original data of ROM for each LLIF construct with different supplemental instrumentation. (XLSX 58Â kb)
DOI: 10.57745/msxxkj
title: ref_raw_100000_100ps.h5

description: dataset of 100 000 trances used in the corresponding paper
DOI: 10.57745/lyyviq
title: 04-12-2023_0mb_50k_100ps.h5

description: dataset of 50 000 trances used in the corresponding paper
DOI: 10.57745/wveafy
title: readmeadata.txt

description: readme
DOI: 10.15468/dl.tcbmwz
title: Occurrence Download

description: A dataset containing 1719 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Terminalia bellirica (Gaertn.) Roxb."
 ]
}

 The dataset includes 1719 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035933-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xv64t3
title: Occurrence Download

description: A dataset containing 252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scomber australasicus Cuvier, 1832",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 252 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035935-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z22cbk
title: Occurrence Download

description: A dataset containing 615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gasterosteiformes",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 615 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035934-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x8g8cj
title: Occurrence Download

description: A dataset containing 952 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Czechia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scolopax rusticola Linnaeus, 1758",
 "Year 2013-2024"
 ]
}

 The dataset includes 952 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035938-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3679036_d11.v1
title: Additional file 7: Table S4. of Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s

description: Segmental duplication events during evolution of MIR166 family genes in soybean. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3680530_d4
title: Additional file 2: Table S1. of Transcriptome analysis of Cucumis sativus infected by Cucurbit chlorotic yellows virus

description: List of DEGs classified as cellular component genes. (XLS 33Â kb)
DOI: 10.6084/m9.figshare.c.3679036_d10
title: Additional file 1: Table S1. of Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s

description: Characteristics of miR166 family in soybean. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3679036_d10.v1
title: Additional file 1: Table S1. of Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s

description: Characteristics of miR166 family in soybean. (XLSX 12 kb)
DOI: 10.15468/dl.u6vqkj
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Terminalia bialata (Roxb.) Steud."
 ]
}

 The dataset includes 53 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035937-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3679054_d4.v1
title: Additional file 4: of Gut metagenomes of type 2 diabetic patients have characteristic single-nucleotide polymorphism distribution in Bacteroides coprocola

description: Results of AP clustering, MuAF distributions and hierarchical clustering for 63 genes in the most differentiated SNP distribution except the top two genes. For a given gene, the clusters of AP clustering, MuAF distribution, and hierarchical tree are presented in separated files named by its GenBank accession, within the folders of APclusterTrees, MuAFhistogram, and HlustTrees, respectively. For gene EDV02481.1, samples were failed to be clustered into two clusters, so it has no AP clustering result. (RAR 14532Â kb)
DOI: 10.6084/m9.figshare.c.3679054_d4
title: Additional file 4: of Gut metagenomes of type 2 diabetic patients have characteristic single-nucleotide polymorphism distribution in Bacteroides coprocola

description: Results of AP clustering, MuAF distributions and hierarchical clustering for 63 genes in the most differentiated SNP distribution except the top two genes. For a given gene, the clusters of AP clustering, MuAF distribution, and hierarchical tree are presented in separated files named by its GenBank accession, within the folders of APclusterTrees, MuAFhistogram, and HlustTrees, respectively. For gene EDV02481.1, samples were failed to be clustered into two clusters, so it has no AP clustering result. (RAR 14532Â kb)
DOI: 10.6084/m9.figshare.c.3679036_d8.v1
title: Additional file 3: Table S2. of Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s

description: Summary of 63 unique miR166s (UmiR166s) in plant species. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3679036_d8
title: Additional file 3: Table S2. of Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s

description: Summary of 63 unique miR166s (UmiR166s) in plant species. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3679048_d5.v1
title: Additional file 2: Table S1. of UroMark—a urinary biomarker assay for the detection of bladder cancer

description: RainDance target primers. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3679048_d5
title: Additional file 2: Table S1. of UroMark—a urinary biomarker assay for the detection of bladder cancer

description: RainDance target primers. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3679048_d4.v1
title: Additional file 1: Table S4. of UroMark—a urinary biomarker assay for the detection of bladder cancer

description: Test performance of individual loci. (XLSX 14 kb)
DOI: 10.15468/dl.g3rwxy
title: Occurrence Download

description: A dataset containing 2527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is one of (January, February)",
 "OccurrenceStatus is Present",
 "TaxonKey is Actitis hypoleucos (Linnaeus, 1758)",
 "Year 2011-2011"
 ]
}

 The dataset includes 2527 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035936-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3679048_d4
title: Additional file 1: Table S4. of UroMark—a urinary biomarker assay for the detection of bladder cancer

description: Test performance of individual loci. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3679054_d2
title: Additional file 1: Table S1. of Gut metagenomes of type 2 diabetic patients have characteristic single-nucleotide polymorphism distribution in Bacteroides coprocola

description: The taxonomic lineages of the 356 bacterial species and accessions of their reference genome assemblies. Table S2. Species with significantly different abundance profiles between the T2D and HC groups. Table S3. Detailed descriptive information for 20 bacterial species with sufficiently supporting NGS reads in a sufficient number of samples. Table S4. Summary of the 1300 genes found to have significantly different SNP densities between the T2D and HC groups. The top 65 genes with the most differentiated SNP distributions between the groups are highlighted in light green. Table S5. Intra-tree distances and enrichment analysis based on phylogenetic trees, hierarchical clustering trees, and affinity propagation clustering for the selected 65 genes. Table S6. SNP densities, intra-tree distances, and numbers of the most biased genes under different mutated allele frequency (MuAF) thresholds (&gt;0.2, &gt;0.5, and &gt;0.8). (XLS 766Â kb)
DOI: 10.6084/m9.figshare.c.3679048_d3.v1
title: Additional file 4: Table S3. of UroMarkâ  a urinary biomarker assay for the detection of bladder cancer

description: RainDance custom sequencing primers. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3679054_d2.v1
title: Additional file 1: Table S1. of Gut metagenomes of type 2 diabetic patients have characteristic single-nucleotide polymorphism distribution in Bacteroides coprocola

description: The taxonomic lineages of the 356 bacterial species and accessions of their reference genome assemblies. Table S2. Species with significantly different abundance profiles between the T2D and HC groups. Table S3. Detailed descriptive information for 20 bacterial species with sufficiently supporting NGS reads in a sufficient number of samples. Table S4. Summary of the 1300 genes found to have significantly different SNP densities between the T2D and HC groups. The top 65 genes with the most differentiated SNP distributions between the groups are highlighted in light green. Table S5. Intra-tree distances and enrichment analysis based on phylogenetic trees, hierarchical clustering trees, and affinity propagation clustering for the selected 65 genes. Table S6. SNP densities, intra-tree distances, and numbers of the most biased genes under different mutated allele frequency (MuAF) thresholds (&gt;0.2, &gt;0.5, and &gt;0.8). (XLS 766Â kb)
DOI: 10.6084/m9.figshare.c.3679048_d3
title: Additional file 4: Table S3. of UroMarkâ  a urinary biomarker assay for the detection of bladder cancer

description: RainDance custom sequencing primers. (XLSX 8 kb)