cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.988343
title: Seawater carbonate chemistry and biodiversity of shallow-water CO2 seeps on Himeshima Island and Showa Iwojima Island, Japan

description: This study is the first to investigate two shallow-water CO2 seeps near Japan from the perspective of ocean acidification. Seawater chemical properties and composition of benthic communities were investigated. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-12-29.
DOI: 10.5061/dryad.5f4d8
title: Data from: Year-round sexual harassment as a behavioral mediator of vertebrate population dynamics

description: Within-species sexual segregation is a widespread phenomenon among
 vertebrates but its causes remain a topic of much debate. Female avoidance
 of male coercive mating attempts has the potential to influence the social
 structure of animal populations, yet it has been largely overlooked as a
 driver of sexual separation. Indeed, its potential role in long-term
 structuring of natural populations has not been studied. Here we use a
 comparative approach to examine the suitability of multiple hypotheses
 forwarded to account for sexual segregation (i.e. activity budget;
 predation risk; thermal niche - fecundity; and social factors) as drivers
 underlying sex-specific habitat use in a monomorphic model vertebrate, the
 small spotted catshark, Scyliorhinus canicula. Using this
 hypothesis-driven approach we show that year-round sexual habitat
 segregation in S. canicula can be accounted for directly by female
 avoidance of male sexual harassment. Long-term electronic tracking reveals
 sperm-storing female catsharks form daytime refuging aggregations in
 shallow water caves (~3.2 m water depth), and undertake nocturnal foraging
 excursions into deeper water (~25 m) most nights. In contrast, males
 occupy deeper, cooler habitat (~18 m) by day, and exploit a range of
 depths nocturnally (1 - 23 m). Males frequent the locations of shallow
 water female refuges, apparently intercepting females for mating when they
 emerge from, and return to, refuges on foraging excursions. Females partly
 compensate for higher metabolic costs incurred when refuging in warmer
 habitat by remaining inactive; however, egg production rates decline in
 the warmest months, but despite this, refuging behavior is not abandoned.
 Thermal choice experiments confirm individual females are willing to
 'pay' in energy terms to avoid aggressive males and unsolicited
 male mating attempts. Long-term evasion of sexual harassment influences
 both the social structure and fecundity of the study population with
 females trading-off potential injury and unsolicited matings with longer
 term fitness. This identifies sexual harassment as a persistent cost to
 females that can mediate vertebrate population dynamics.
description: 11-2052
 dataMS Excel spreadsheet
 containing data obtained under natural (field) and controlled (laboratory)
 conditions. Individual S. canicula were electronically tracked in the
 natural environment, whilst in the laboratory the movements of individuals
 were tracked using video tracking techniques. Observations made under both
 natural and controlled conditions are also included. See manuscript
 materials and methods for further details.
DOI: 10.5061/dryad.50hf0
title: Data from: The Kuroshio Current influences genetic diversity and population genetic structure of a tropical seagrass, Enhalus acoroides

description: Information on genetic diversity and differentiation of seagrass
 populations is essential for the conservation of coastal ecosystems.
 However, little is known about the seagrasses in the Indo-West Pacific
 Ocean, where the world's highest diversity of seagrasses occurs. The
 influence of sea currents on these populations is also unknown. We
 estimated the genetic diversity and population genetic structure and
 identified reproductive features in Enhalus acoroides populations from the
 Yaeyama Islands, Hainan Island and the Philippines. The Philippines are
 situated at the centre of the E. acoroides range, Yaeyama and Hainan are
 peripheral populations, and the Yaeyama population is at the northern
 limit of the species range. The powerful Kuroshio Current flows from the
 Philippines to Yaeyama. Genetic analyses using nine microsatellite markers
 indicated that reproduction of E. acoroides is mostly sexual. Clonal
 diversity does not decrease in northern populations, although genetic
 diversity does. However, the genetic diversity of the Yaeyama populations
 is greater than that of the Hainan populations. Significant genetic
 differentiation among most populations was evident; however, the Yaeyama
 and north-east Philippines populations were genetically similar, despite
 being separated by ~1100 km. An assignment test suggested that recruitment
 occurs from the north-east Philippines to Yaeyama. The strong current in
 this region is probably responsible for the extant genetic diversity and
 recruitment patterns.
description: # Data from: The Kuroshio Current influences genetic diversity and
 population genetic structure of a tropical seagrass, *Enhalus acoroides*
 [https://doi.org/10.5061/dryad.50hf0](https://doi.org/10.5061/dryad.50hf0)
 ## Description of the data and file structure ### Files and variables ####
 File:
 Nakajima\_et\_al\_Enhalus\_acoroides\_microsatellite\_genotypic\_data.xlsx
 #### Enhalus acoroides microsatellite genotypic data *Enhalus acoroides*
 microsatellite genotypic data, 9 loci, 47 populations, 1950 samples.
 Column A: collection site. Row 1: microsatellite locus name (Eaco_001 to
 Eaco_055). Allele sizes (base pairs) were output by Applied Biosystems
 Genetic Analyzer 3130xl.
DOI: 10.5061/dryad.vf4kh
title: Data from: Thalamic volume is reduced in cervical and laryngeal dystonias

description: Background: Dystonia, a debilitating movement disorder characterized by
 abnormal fixed positions and/or twisting postures, is associated with
 dysfunction of motor control networks. While gross brain lesions can
 produce secondary dystonias, advanced neuroimaging techniques have been
 required to identify network abnormalities in primary dystonias. Prior
 neuroimaging studies have provided valuable insights into the
 pathophysiology of dystonia, but few directly assessed the gross volume of
 motor control regions, and to our knowledge, none identified abnormalities
 common to multiple types of idiopathic focal dystonia. Methods: We used
 two gross volumetric segmentation techniques and one voxelwise volumetric
 technique (voxel based morphometry, VBM) to compare regional volume
 between matched healthy controls and patients with idiopathic primary
 focal dystonia (cervical, n = 17, laryngeal, n = 7). We used (1) automated
 gross volume measures of eight motor control regions using the FreeSurfer
 analysis package; (2) blinded, anatomist-supervised manual segmentation of
 the whole thalamus (also gross volume); and (3) voxel based morphometry,
 which measures local T1-weighted signal intensity and estimates gray
 matter density or volume at the level of single voxels, for both
 whole-brain and thalamus. Results: Using both automated and manual gross
 volumetry, we found a significant volume decrease only in the thalamus in
 two focal dystonias. Decreases in whole-thalamic volume were independent
 of head and brain size, laterality of symptoms, and duration. VBM measures
 did not differ between dystonia and control groups in any motor control
 region. Conclusions: Reduced thalamic gross volume, detected in two
 independent analyses, suggests a common anatomical abnormality in cervical
 dystonia and spasmodic dysphonia. Defining the structural underpinnings of
 dystonia may require such complementary approaches.
description: Supplemental Data -
 Regional Volume MeasuresThis file contains
 regional volume measures for 8 brain areas, as well as large-scale volume
 measures (total intracranial volume and total brain volume) for each
 subject.JWaugh.SupplementalData.SecondRevision.xlsx
DOI: 10.5061/dryad.4j867pv
title: Data from: Towards an interactive, process‐based approach to understanding range shifts: developmental and environmental dependencies matter

description: Many species are undergoing distributional changes in response to climate
 change. However, wide variability in range shifting rates has been
 observed across taxa, and even among closely-related species. Attempts to
 link climate-mediated range shifts to traits has often produced weak or
 conflicting results. Here we investigate interactive effects of
 developmental processes and environmental stress on the expression of
 traits relevant to range shifts. We use an individual-based modelling
 approach to assess how different developmental strategies affect range
 shift rates under a range of environmental conditions. We find that under
 stressful conditions, such as at the margins of the species’ fundamental
 niche, investment in prolonged development leads to the greatest rates of
 range shifting, especially when longer time in development leads to of
 improved fecundity and dispersal-related traits. However, under benign
 conditions, and when traits are less developmentally plastic, shorter
 development times are preferred for rapid range shifts, because higher
 generational frequency increases the number of individual dispersal events
 occurring over time. Our results suggest that the ability of a species to
 range shift depends not only on their dispersal and colonisation
 characteristics but also how these characteristics interact with
 developmental strategies. Benefits of any trait always depended on the
 environmental and developmental sensitivity of life history trait
 combinations, and the environmental conditions under which the range shift
 takes place. Without considering environmental and developmental sources
 of variation in the expression of traits relevant to range shifts, there
 is little hope of developing a general understanding of intrinsic drivers
 of range shift potential
description: range shifting modelling
 dataMean distance moved and
 standard deviation from theoretical modelling of range shifting when
 traits are interacting with developmental life historymodelling_data.csvlarvae rearing datadata from larval rearing experiment of wild caught Ischnura elegans larvae reared to adults in the lablarvae_data.csv
DOI: 10.5061/dryad.9f646f2
title: Data from: Racial differences in recurrent ischemic stroke risk and recurrent stroke case fatality

description: Objective: To determine black-white differences in 1-year recurrent stroke
 and 30-day case fatality following a recurrent stroke in older US adults.
 Methods: We conducted a retrospective cohort study using a 5% random
 sample of Medicare beneficiaries with fee-for-service health insurance
 coverage who were hospitalized for ischemic stroke between 1999 and 2013.
 Hazard ratios (HR) for recurrent ischemic stroke and risk ratios (RR) for
 30-day case fatality comparing blacks to whites were calculated with
 adjustment for demographics, risk factors, and competing risk of death,
 where appropriate. Results: Among 128,789 Medicare beneficiaries having an
 ischemic stroke (mean age 80 years [SD 8 years], 60.4% male), 11.1% were
 black. The incidence rate of recurrent ischemic stroke per 1,000
 person-years for whites and blacks, respectively, was 108 (95%CI 106-111)
 and 154 (95%CI 147-162). The multivariable-adjusted hazard ratio for
 recurrent stroke among blacks compared with whites was 1.36 (95%CI
 1.29-1.44). The case fatality following recurrent stroke for blacks and
 whites, respectively, was 21% (95%CI 21-22%) and 16% (95%CI 15-18%). The
 multivariable-adjusted relative risk for mortality within 30 days of a
 recurrent stroke among blacks compared with whites was 0.82 (95%CI
 0.73-0.93). Conclusions: The risk of stroke recurrence among older
 Americans hospitalized for ischemic stroke is higher for blacks when
 compared to whites, while 30-day case fatality following recurrent stroke
 remains lower for blacks.
description: revised_BWdiff_RecurrentIS_CaseFatality_SupplSupplementary Tables and Figure (Tables e-1-7, Figure e-1)
DOI: 10.5061/dryad.7ht5j
title: Data from: Sex-biased dispersal creates spatial genetic structure in a parthenogenetic ant with a dependent-lineage reproductive system

description: Reproduction and dispersal are key aspects of species life history that
 influence spatial genetic structure in populations. Several ant species in
 the genus Cataglyphis have evolved a unique breeding system in which new
 reproductives (that is, queens and males) are produced asexually by
 parthenogenesis; in contrast, non-reproductives (that is, workers) are
 produced via sexual reproduction by mates from distinct genetic lineages.
 We investigated how these two coexisting reproductive methods affect
 population-level spatial genetic structure using the ant Cataglyphis
 mauritanica as a model. We obtained genotypes for queens and their male
 mates from 338 colonies, and we found that the two lineages present in the
 study population occurred with equal frequency. Furthermore, analysis of
 spatial genetic structure revealed strong sex-biased dispersal. Because
 queens were produced by parthenogenesis and because they dispersed over
 short distances, there was an extreme level of spatial structuring: a
 mosaic of patches composed of clonal queens was formed. Males, on the
 other hand, dispersed over several hundred metres and, thus, across
 patches, ensuring successful interlineage mating.
description: C_mauritanica_dataSampling locations of Cataglyphis mauritanica colonies, and microsatellite genotype data for all individuals (males, queens and workers).
DOI: 10.5061/dryad.5914v
title: Data from: Does competitive interaction drive species recognition in a house mouse secondary contact zone?

description: Miscommunication may induce a high risk of unnecessary escalated fights
 between competitors (populations to species), resulting in selection
 favoring signal divergence through agonistic character displacement (ACD).
 When signals allowing discrimination between competitors are also involved
 in mate recognition, ACD could explain reproductive character displacement
 (RCD). We tested interference competition between males as a potential
 driver of RCD (here, subspecies recognition) in a secondary contact zone
 between two mouse subspecies (Mus musculus musculus and Mus musculus
 domesticus) displaying asymmetric dominance. Since such asymmetry could
 create a conflict between subspecies (compatibility) and quality
 (dominance) recognition in the contact zone, we tested for geographic
 variation in female preference for dominant males in the subordinate
 subspecies, musculus. We assessed competition between males and tested ACD
 during dyadic encounters comparing behavior displayed during trials
 between heterosubspecifics originating from populations close to the
 secondary contact (“contact”) and further away (“allopatric”). We also
 compared behavior of contact versus allopatric males during
 homosubspecific versus heterosubspecific trials to test whether subspecies
 discrimination evolved under competitive interference. Although domesticus
 dominated most heterosubspecific trials regardless of geographic origin,
 agonistic behavior was more marked (i.e., lower attack latencies) during
 contact than allopatric encounters, suggesting that ACD occurred.
 Comparing behavior during homosubspecific and heterosubspecific
 encounters, only allopatric musculus displayed differences, that is,
 higher attack latencies toward heterosubspecifics, indicating that
 discrimination between competitors did not evolve with ACD. Finally,
 although allopatric musculus females seemed to prefer dominant males,
 their contact counterparts did not, suggesting that “compatibility” may
 have outweighed “quality” under a risk of hybridization.
description: Copie de
 data_ms-1Data describing the
 competition trials for ACD assessmentCopie de
 PrefsACD_msData for female
 preference and conflict of recognition
DOI: 10.15468/dl.5c9td4
title: Occurrence Download

description: A dataset containing 1643 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 "TaxonKey is one of (Dermoptera [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 1643 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000712-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.68dq135
title: Data from: In vitro aging behavior of dental composites considering the influence of filler content, storage media and incubation time

description: 1. Objective: Over time dental composites age due to mechanical impacts
 such as chewing and chemical impacts such as saliva enzymes and food
 ingredients. For this research, the focus was placed on chemical
 degradation.The objective of this study was to simulate hydrolysis by
 using different food simulating liquids and to assess their impact on the
 mechanical parameter Vickers microhardness (MHV) and the physicochemical
 parameter contact angle (CA). 2. Methods: Specimen of three composites (d
 = 6 mm, h = 2 mm; n = 435) classified with respect to their filler content
 (wt%), namely low-filled, medium-filled and highly-filled, were stored for
 0, 14, 30, 90 and 180 days in artificial saliva (pH 7), citric acid (pH 3;
 pH 5), lactic acid (pH 3; pH 5) and ethanol (40 %vol; 60 %vol) and
 assessed regarding to MHV and CA.Statistics: Kruskal-Wallis test, stepwise
 linear regression, bivariate Spearman Rank Correlation (p &lt; 0.05).
 3. Results: While stored in artificial saliva, acid and ethanol the CA
 decreased especially for the low- and medium-filled composites. It was
 shown that rising the filler content caused less surface changes in the
 CA. Storage in ethanol led to a significant decrease of MHV of all
 composites. Regression analysis showed that the effect of in vitro aging
 on MHV was mainly influenced by the composite material and therefore by
 filler content (R² = 0.67; p &lt; 0.05). In contrast, the CA is more
 influenced by incubation time and filler content (R² = 0.2; p &lt;
 0.05) leading to a higher risk of plaque accumulation over time.
 Significance: In vitro aging showed significant changes on the mechanical
 and physicochemical properties of dental composites which may shorten
 their long-term functionality. In conclusion, it can be stated, that the
 type of composite material, especially rising filler content seems to
 improve the materials’ resistance against the processes of chemical
 degradation.
description: all_dataContact angle for artificial saliva and diiodomethan; hardness measurment for instrumented indentiondata.xls
DOI: 10.5061/dryad.cj64p
title: Data from: Ten days of darkness causes temporary blindness during an early critical period in higher mammals

description: Extended periods of darkness have long been used to study how the
 mammalian visual system develops in the absence of any instruction from
 vision. Because of the relative ease of implementation of darkness as a
 means to eliminate visually driven neural activity, it has usually been
 imposed earlier in life and for much longer periods than was the case for
 other manipulations of the early visual input used for study of their
 influences on visual system development. Recently, it was shown that
 following a very brief (10 days) period of darkness imposed at five weeks
 of age, kittens emerged blind. Although vision as assessed by measurements
 of visual acuity eventually recovered, the time course was very slow as it
 took seven weeks for visual acuity to attain normal levels. Here, we
 document the critical period of this remarkable vulnerability to the
 effects of short periods of darkness by imposing 10 days of darkness on
 nine normal kittens at progressively later ages. Results indicate that the
 period of susceptibility to darkness extends only to about 10 weeks of
 age, which is substantially shorter than the critical period for the
 effects of monocular deprivation in the primary visual cortex, which
 extends beyond six months of age.
description: MitchellPRSBFig2dataData from Figure 2MithellPRSBdataFig3Data from Figure 3MitchellPRSBFigure4dataData for Figure 4MitchellPRSBFig5dataData for Fig 5
DOI: 10.5061/dryad.4dn80
title: Data from: Spatially explicit assessment of estuarine fish after Deepwater Horizon oil spill: tradeoffs in complexity and parsimony

description: Evaluating long-term contaminant effects on wildlife populations depends
 on spatial information about habitat quality, heterogeneity in contaminant
 exposure, and sensitivities and distributions of species integrated into a
 systems modeling approach. Rarely is this information readily available,
 making it difficult to determine the applicability of realistic models to
 quantify population-level risks. To evaluate the trade-offs between data
 demands and increased specificity of spatially explicit models for
 population-level risk assessments, we developed a model for a standard
 toxicity test species, the sheepshead minnow (Cyprinodon variegatus)
 exposed to oil contamination following the Deepwater Horizon oil spill and
 compared the output with various levels of model complexity to a standard
 risk quotient approach. The model uses habitat and fish occupancy data
 collected over five sampling periods throughout 2008-2010 in Pensacola and
 Choctawhatchee Bays, Florida, to predict species distribution,
 field-collected and publically available data on oil distribution and
 concentration, and chronic toxicity data from laboratory assays applied to
 a matrix population model. The habitat suitability model established
 distribution of fish within Barataria Bay, Louisiana, and the population
 model projected the dynamics of the species in the study area over a
 five-year period (October 2009 – September 2014). Vital rates were
 modified according to estimated contaminant concentrations to simulate oil
 exposure effects. To evaluate the differences in levels of model
 complexity, simulations varied from temporally and spatially explicit,
 including seasonal variation and location-specific oiling, to simple
 interpretations of a risk quotient derived for the study area. The results
 of this study indicate that species distribution, as well as spatially and
 temporally variable contaminant concentrations, can provide a more
 ecologically relevant evaluation of species recovery from catastrophic
 environmental impacts but might not be cost-effective or efficient for
 rapid assessment needs.
description: SEPMdataData used to simulate sheepshead minnow exposure to oiled sediment in Barataria Bay, Louisiana following the Deepwater Horizon oil spill. Files include temperature- and concentration-specific population parameters, laboratory data used to derive oiled sediment effects on growth and survival, field data used in habitat suitability model, and temperature and oiling severity data from Barataria Bay.