cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bu6cf7
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sternochetus mangiferae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Specimen, Material sample, Occurrence evidence)"
 ]
}

 The dataset includes 297 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019381-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/cguenl
title: Cryo2StructData : Small Subsample Dataset
title: Cryo2StructData: A Large Labeled Cryo-EM Density Map Dataset for AI-based Modeling of Protein Structures
title: Cryo2StructData

description: This repository comprises the smaller subset of Cryo2StructData. From the full Cryo2StructData dataset, we extracted a reduced subset consisting of 1867 curated density maps, representing 25% of the original Cryo2StructData collection.
description: Please note that this repository does not include labeled maps. We have provided a collection of scripts in our GitHub repository specifically designed to generate the label maps (amino acid types, atom types, and secondary structure types). These label maps, in combination with the normalized density map, are intended for training and testing AI-based models to build protein structures from cryo-EM density maps, as detailed in the Cryo2StructData paper (https://doi.org/10.1101/2023.06.14.545024).
description: The source code and instructions to reproduce our results are freely available at https://github.com/BioinfoMachineLearning/cryo2struct
DOI: 10.7910/dvn/chng59
title: Ghana Youth Survey (GYS)

description: This repository contains data from the Ghana Youth Survey (GYS); specifically, it contains data collected on a sample of 2,064 youths in Ghana over six rounds from 2008 to 2020. The data was collected as part of a randomized trial aiming to measure the returns to secondary education. The treatment status of individuals in the sample has been removed as the authors have not yet published the paper. It will be made public once the main study has been completed.
description: Stata, 12
DOI: 10.7910/dvn/ci2ods
title: 317_PineNewSkel
title: Rare A‑Type, Spiro-Type, and Highly Oligomeric Proanthocyanidins from Pinus massoniana

description: Raw NMR, MS, and ECD data for three new PACs
DOI: 10.7910/dvn/dfavte
title: 262_LicAdevs
title: NMR data of dihydrobenzofuran derivatives of licochalcone A and coisolated compounds.

description: Compilation of raw NMR data (FID) with structural description (pms file) and annotation (PDF) of the newly described dihydrobenzofuran derivatives (LicAF1 and LicAF2) of licochalcone A (LicA). The dataset contains 1D, 1H NMR of photoisomerized LicAF1/2 and LicA, as well as the 1D 1HNMR data of co-isolated major licorice compounds (echinatin, licoisoflavone A, licoflavone B, licochalcone B, glabrone).
DOI: 10.7910/dvn/dhw67b
title: Townsend Thai Project Household Annual Resurvey, 2006 (Rural)

description: The project is carried out in Thailand under the direction of Khun Sombat Sakuntasathhien and dedicated staff. The project is administered in the United States at the National Opinion Research Center and the University of Chicago. Survey design and research collaborators include Anna Paulson of Northwestern University, Tae Joeng Lee of Yonse University, and Michael Binford of the University of Florida. Robert M. Townsend is overall project director and principal investigator.
&lt;br/&gt; &lt;br/&gt; The initial purpose of the NICHD-NSF funded project was to evaluate the role of informal institutions such as the family and local networks in helping to support the welfare and well-being of individuals in semi-urban and rural areas of Thailand. Risk, and the potentially adverse and direct consequences of household- and firm-specific shocks is a key part of project. The mediating role of the family and social and economic networks in the mobilization of savings and allocation of cre
dit was also deemed essential. These networks are not viewed in isolation but rather are part of the larger village, regional, and national level financial system. Thus the project includes an evaluation of village-level financial institutions, such as Production Credit Groups and rice banks, and national-level financial institutions such as commercial banks and the government agricultural bank, the Bank for Agriculture and Agricultural Cooperatives (BAAC).
&lt;br/&gt; &lt;br/&gt; Indeed, the project has both micro and macro aspects. It seeks to evaluate informal and formal financial institutions and markets and to construct and evaluate macro models of growth, fluctuations, and crisis. The macro models are based on the measured micro- underpinnings. &lt;br/&gt; &lt;br/&gt; Household Resampling. Every effort is made to resurvey previously interviewed households. In l998 we successfully reinterviewed 95.32% of the l997 target, previously- surveyed population. In l999 we re
surveyd 97% of the l997 target. Most of the attrition is to due to the household having moved out of the village, though a handful have refused to be interviewed, and a third cause is death of the head. If in any year we are short of the target 15 households per village, we include random replacements, for the purpose of constructing village average variables, for example.
&lt;br/&gt;
DOI: 10.7910/dvn/dns7kh
title: Townsend Thai Project Household Annual Resurvey, 2014 (Rural)

description: The project is carried out in Thailand under the direction of Khun Sombat Sakuntasathhien and dedicated staff. The project is administered in the United States at the National Opinion Research Center and the University of Chicago. Survey design and research collaborators include Anna Paulson of Northwestern University, Tae Joeng Lee of Yonse University, and Michael Binford of the University of Florida. Robert M. Townsend is overall project director and principal investigator.
&lt;br/&gt; &lt;br/&gt; The initial purpose of the NICHD-NSF funded project was to evaluate the role of informal institutions such as the family and local networks in helping to support the welfare and well-being of individuals in semi-urban and rural areas of Thailand. Risk, and the potentially adverse and direct consequences of household- and firm-specific shocks is a key part of project. The mediating role of the family and social and economic networks in the mobilization of savings and allocation of cre
dit was also deemed essential. These networks are not viewed in isolation but rather are part of the larger village, regional, and national level financial system. Thus the project includes an evaluation of village-level financial institutions, such as Production Credit Groups and rice banks, and national-level financial institutions such as commercial banks and the government agricultural bank, the Bank for Agriculture and Agricultural Cooperatives (BAAC).
&lt;br/&gt; &lt;br/&gt; Indeed, the project has both micro and macro aspects. It seeks to evaluate informal and formal financial institutions and markets and to construct and evaluate macro models of growth, fluctuations, and crisis. The macro models are based on the measured micro- underpinnings. &lt;br/&gt; &lt;br/&gt; Household Resampling. Every effort is made to resurvey previously interviewed households. In l998 we successfully reinterviewed 95.32% of the l997 target, previously- surveyed population. In l999 we re
surveyd 97% of the l997 target. Most of the attrition is to due to the household having moved out of the village, though a handful have refused to be interviewed, and a third cause is death of the head. If in any year we are short of the target 15 households per village, we include random replacements, for the purpose of constructing village average variables, for example.
&lt;br/&gt; More details about the Townsend Thai Project are available at http://cier.uchicago.edu/
DOI: 10.7910/dvn/donk0d
title: Glycyrrhetinic acid/Enoxolone 900_400MHz DMSOd6 NMR data

description: NMR data for glycyrrhetinic acid (Enoxolone) in DMSO-d6. The dataset contains the 1D 1H and 13C, as well as 2D COSY, HSQC, HMBC acquired at 900MHz (Bruker Avance spectrometer, equipped with cryoprobe 5 mm CPTCI); in addition, 1D: 1H and 13C acquired at 400 MHz (Jeol Spectrometer, equipped with Royal probe) are provided.
description: IMPs
DOI: 10.7910/dvn/dtv4jf
title: Cryo2StructData : Trained Model and Data Splits (Small Subset)
title: Cryo2StructData: A Large Labeled Cryo-EM Density Map Dataset for AI-based Modeling of Protein Structures

description: This repository includes the trained transformer-based model for the small subset Cryo2StructData dataset, as well as the training and validation split files. These split files categorize density map EMD-IDs into low, medium, and high resolutions. The training and validation sets contain 1680 and 187 density maps, respectively, with a split ratio of 90:10.
description: The source code and instructions to use trained models for inference are freely available at https://github.com/BioinfoMachineLearning/cryo2struct
description: The trained model checkpoints are for predicting amino acid types, secondary structure types and backbone atom types. The <b><i>backbone_atom_prediction.ckpt</i></b> is used during the inference phase to classify each voxel into one of four different classes representing three backbone atoms (Cα,C and N) and no presence of any backbone atoms. Similarly, the <b><i>amino_acid_type_prediction.ckpt</i></b> is used to classify each voxel into one of twenty-one different amino acid classes representing twenty different amino acids and unknown or absence of amino acid. Finally, the <b><i>secondary_structure_prediction.ckpt</i></b> is used to classify each voxel into one of four different classes representing three secondary structure atoms (coils, α-helices, and β-strands) and no presence of any secondary structure atoms.<br>
The inference code that utilizes these checkpoints is available in the Cryo2StructData GitHub repository : github.com/BioinfoMachineLearning/cryo2struct
DOI: 10.7910/dvn/dvygst
title: CRISPR-mediated germline mutagenesis for genetic sterilization of Anopheles gambiae males

description: Datasets associated with the publication A.L. Smidler et al., (2023) "CRISPR-mediated germline mutagenesis for genetic sterilization of &lt;i&gt;Anopheles gambiae&lt;/i&gt;"
DOI: 10.7910/dvn/e5tgka
title: Apigenin annotated NMR 400MHz DMSOd6 data

description: NMR data for Apiginenin

Contains:
1D: 1H, 13C
2D: COSY, HSQC, HMBC
Spin parameters for 1H and chemical shifts of carbon
Attributed 1H, 13C spectra
description: IMPs
DOI: 10.7910/dvn/egt2ih
title: Gallic acid annotated NMR 400 MHz DMSOd6 data

description: NMR data for Gallic acid Contains: 1D: 1H, 13C 2D: COSY, HSQC, HMBC 
Attributed 1H, 13C spectra
description: IMPs
DOI: 10.7910/dvn/elutil
title: Quercetin, dihydrate annotated NMR 400 MHz DMSOd6 data

description: NMR data for Quercetin Contains: 1D: 1H, 13C 2D: COSY, HSQC, HMBC Spin parameters for 1H and chemical shifts of carbon Attributed 1H, 13C spectra
description: IMPs
DOI: 10.15468/dl.qqggf6
title: Occurrence Download

description: A dataset containing 2697 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microhyla butleri"
 ]
}

 The dataset includes 2697 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019382-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/eqoxci
title: (LMO2) pcDNA3.1-CMV-Gluc-VChR1-EYFP
title: pcDNA3.1-CMV-LMO2 (GLuc-VChR1-EYFP)

description: &lt;i&gt;Description coming soon!&lt;/i&gt;
&lt;br&gt;
&lt;br&gt;
First described in Berglund et al. PLOS ONE 2013.
description: LMO2
description: The NeuroNex Technology Hub and NeuroNex Bioluminescent Constructs Database are supported by the National Science Foundation (NSF) and its Division of Biological Infrastructure under Award No. 1707352.
DOI: 10.15468/dl.5dek94
title: Occurrence Download

description: A dataset containing 557679 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "StateProvince is one of (Distrito Capital de Bogotá)"
 ]
}

 The dataset includes 557679 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019336-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/eqrha7
title: (LMO4) pAAV-hSyn-GLucM23-VChR1-EYFP

description: &lt;i&gt;Description coming soon!&lt;/i&gt;
&lt;br&gt;
&lt;br&gt;
First described in Park et al. J Neurosci Res 2017.
description: LMO4
description: <b>Research findings:</b>
Expression of this LMO4 and addition of its luciferin coelenterazine (CTZ) stops ipsiversive circling behavior induced by chemical lesions + amphetamine stimulation in rats. See Park et al. 2017 for details.
<br>
<br>
The NeuroNex Technology Hub and NeuroNex Bioluminescent Constructs Database are supported by the National Science Foundation (NSF) and its Division of Biological Infrastructure under Award No. 1707352.
DOI: 10.7910/dvn/eyiwjq
title: 349_CCCBD
title: Selective Preparation and High Dynamic-Range Analysis of Cannabinoids in “CBD Oil” and Other Cannabis sativa Preparations

description: Raw NMR Data associated with publication on the countercurrent separation of CBD and congeners from CBD Oil
DOI: 10.7910/dvn/ezumi9
title: Pilot fMRI of breath-hold in OSA

description: Pilot fMRI project on neuroimaging of two obstructive sleep apnea (OSA) and two control subjects. The purpose is to establish validity and feasibility of performing maximal inspiratory apnea during fMRI scanning as a means to test neural control of autonomic function. The data also serve as a test set for assessing fMRI signals during physiologic challenges.
description: The Institutional Review Board of UCLA approved this study (IRB# 10-001012), which was in compliance with the Declaration of Helsinki; participants provided informed, written consent. 

Participants were instructed to take a maximal inspiratory apnea upon seeing a signal, and sustain this for the duration of the signal (30 seconds). Upon seeing the light, the instructions were to breathe in briefly, breathe out fully, then breathe in to maximum capacity and hold. This was repeated four times.

Timing: TR = 2.5 seconds; baseline 58 scans, task duration 12 scans, four repeats repeat interval 48 scans, total duration 250 scans. 

MRI scanner: Siemens Tim Trio, 8 channel head coil
DOI: 10.7910/dvn/f34gvs
title: Capsaicin 400 MHz DMSOd6 NMR data

description: NMR data for Capsaicin Contains: 1D: 1H, 13C 2D: COSY, HSQC, HMBC in raw JEOL format and jdx.files, assigned and annotated 1H and 13C spectra, as well as Spin parameters for 1H and chemical shifts of carbon.
description: IMPs
DOI: 10.7910/dvn/f5pjy3
title: 201_CinnaDent
title: Targeting Trimeric and Tetrameric Proanthocyanidins of Cinnamomum verum Bark as Bioactives for Dental Therapies

description: Raw NMR Data associated with the publication on "Targeting Trimeric and Tetrameric Proanthocyanidins of Cinnamomum verum Bark as Bioactives for Dental Therapies" in the Journal of Natural Products 2020 83 (11), 3287-3297
DOI: 10.7910/dvn/f674qr
title: Construction and test result of an all-REBCO conduction-cooled 23.5 T magnet prototype towards a benchtop 1 GHz NMR spectroscopy

description: A compact benchtop high-eld REBCO NMR is one of the most promising HTS applications. An all-REBCO, conduction-cooled magnet is a very attractive design option for demonstrating the unique potential of REBCO for forefront magnets. In this research, we have successfully constructed and tested a prototype all-REBCO, conduction-cooled, 23.5 T magnet operating at 10 K. We have applied the concept of an extreme No-Insulation (NI) winding technique, coupled with a solder-shunting procedure to improve magnet performance. We have also used a temperature-controlled charging sequence (TCCS) to reduce the screening current. The magnet was energized to 23.6 T at 14 K; it was further operated to 25 T at 10 K for nearly 60 hours.
description: PSFC REPORT PSFC/JA-22-64<br><br>This work was supported by the National Institute of General Medical Sciences of the National Institutes of Health under Award R21GM129688.<br><br>If this record does not contain the full text, then the manuscript has been embargoed by the publisher thus restricting open access for 12 to 24 months after publication.
DOI: 10.7910/dvn/fbjx1d
title: Townsend Thai Project Institutional Annual Resurvey, 2006

description: The project is carried out in Thailand under the direction of Khun Sombat Sakuntasathhien and dedicated staff. The project is administered in the United States at the National Opinion Research Center and the University of Chicago. Survey design and research collaborators include Anna Paulson of Northwestern University, Tae Joeng Lee of Yonse University, and Michael Binford of the University of Florida. Robert M. Townsend is overall project director and principal investigator.
&lt;br /&gt;&lt;br /&gt; The initial purpose of the NICHD-NSF funded project was to evaluate the role of informal institutions such as the family and local networks in helping to support the welfare and well-being of individuals in semi-urban and rural areas of Thailand. Risk, and the potentially adverse and direct consequences of household- and firm-specific shocks is a key part of project. The mediating role of the family and social and economic networks in the mobilization of savings and allocation of c
redit was also deemed essential. These networks are not viewed in isolation but rather are part of the larger village, regional, and national level financial system. Thus the project includes an evaluation of village-level financial institutions, such as Production Credit Groups and rice banks, and national-level financial institutions such as commercial banks and the government agricultural bank, the Bank for Agriculture and Agricultural Cooperatives (BAAC).
&lt;br /&gt;&lt;br /&gt; Indeed, the project has both micro and macro aspects. It seeks to evaluate informal and formal financial institutions and markets and to construct and evaluate macro models of growth, fluctuations, and crisis. The macro models are based on the measured micro- underpinnings.&lt;br /&gt;&lt;br /&gt; 161 institutions were surveyed in the initial l997 cross-section survey. In the annual resurveys we checked to see if an institution was pre-existing, but new institutions were added as well. Some i
nstitutions had failed. For example in l998, 45 institutions were sampled in total.
DOI: 10.15468/dl.djkkgu
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemimeris sabulosa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 67 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019384-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/fcdg0w
title: Cryo2StructData : Full Dataset
title: Cryo2StructData: A Large Labeled Cryo-EM Density Map Dataset for AI-based Modeling of Protein Structures
title: Cryo2StructData

description: This repository contains the complete Cryo2StructData dataset, which encompasses 7,392 density maps. The data are organized based on EMD-IDs.
description: The source code and instructions to reproduce our results are freely available at 
https://github.com/BioinfoMachineLearning/cryo2struct
description: Please note that this repository does not include labeled maps. We have provided a collection of scripts in our GitHub repository specifically designed to generate the label maps (amino acid types, atom types, and secondary structure types). These label maps, in combination with the normalized density map, are intended for training and testing AI-based models to build protein structures from cryo-EM density maps, as detailed in the Cryo2StructData paper (https://doi.org/10.1038/s41597-024-03299-9) .
DOI: 10.7910/dvn/fgx2f4
title: Townsend Thai Project Household Annual Resurvey, 2007 (Rural)

description: The project is carried out in Thailand under the direction of Khun Sombat Sakuntasathhien and dedicated staff. The project is administered in the United States at the National Opinion Research Center and the University of Chicago. Survey design and research collaborators include Anna Paulson of Northwestern University, Tae Joeng Lee of Yonse University, and Michael Binford of the University of Florida. Robert M. Townsend is overall project director and principal investigator.
&lt;br/&gt; &lt;br/&gt; The initial purpose of the NICHD-NSF funded project was to evaluate the role of informal institutions such as the family and local networks in helping to support the welfare and well-being of individuals in semi-urban and rural areas of Thailand. Risk, and the potentially adverse and direct consequences of household- and firm-specific shocks is a key part of project. The mediating role of the family and social and economic networks in the mobilization of savings and allocation of cre
dit was also deemed essential. These networks are not viewed in isolation but rather are part of the larger village, regional, and national level financial system. Thus the project includes an evaluation of village-level financial institutions, such as Production Credit Groups and rice banks, and national-level financial institutions such as commercial banks and the government agricultural bank, the Bank for Agriculture and Agricultural Cooperatives (BAAC).
&lt;br/&gt; &lt;br/&gt; Indeed, the project has both micro and macro aspects. It seeks to evaluate informal and formal financial institutions and markets and to construct and evaluate macro models of growth, fluctuations, and crisis. The macro models are based on the measured micro- underpinnings. &lt;br/&gt; &lt;br/&gt; Household Resampling. Every effort is made to resurvey previously interviewed households. In l998 we successfully reinterviewed 95.32% of the l997 target, previously- surveyed population. In l999 we re
surveyd 97% of the l997 target. Most of the attrition is to due to the household having moved out of the village, though a handful have refused to be interviewed, and a third cause is death of the head. If in any year we are short of the target 15 households per village, we include random replacements, for the purpose of constructing village average variables, for example.
&lt;br/&gt;
DOI: 10.15468/dl.f3kpfr
title: Occurrence Download

description: A dataset containing 6191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "RecordedById is https://orcid.org/0000-0002-3620-6188"
 ]
}

 The dataset includes 6191 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228766-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jwh43
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anomoia leucochila Itō, 1984",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208524-220831081235567/datasets/export for details.