cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.gt223/1
title: Perna canaliculus_Genotype data for GENEPOP

description: Microsatellite genotype data of 14 Perna canaliculus populations and 10 loci used for GENEPOP analysis. Can be transferred to other input data used for FSTAT, POPGENE, ARLEQUIN, MICROCHECHER analyses.
DOI: 10.5061/dryad.gt223/2
title: Perna canaliculus_Clines analysis data

description: Data used to fit sigmoidal cline plots [y = a0+a1/(1+exp(–(x–a2)/a3))] using SLIDEWRITE PLUS v3.
DOI: 10.5061/dryad.gt223/3
title: Perna canaliculus_Geospatial data

description: Latitudes and longitudes of 14 Perna canaliculus populations used for Clines analysis.
DOI: 10.5061/dryad.gt223/4
title: Perna canaliculus_Introgress_Four populations

description: Microsatellite genotype data of four admixed populations and 10 loci used for INTROGRESS analysis.
DOI: 10.5061/dryad.gt223/5
title: Perna canaliculus_Introgress_Six populations

description: Microsatellite genotype data of six admixed populations and 10 loci used for INTROGRESS analysis.
DOI: 10.5061/dryad.gt223/6
title: Perna canaliculus_BAYESASS_Four populations

description: Multilocus genotype data of four populations used for BAYESASS analysis (in population alpha order).
DOI: 10.5061/dryad.gt223/7
title: Perna canaliculus_BAYESASS_Six populations

description: Multilocus genotype data of six populations used for BAYESASS analysis (in population alpha order).
DOI: 10.5061/dryad.j2063/1
title: Standing genetic variation in host preference for mutualist microbial symbionts
DOI: 10.5061/dryad.n420r/2
title: Craugastor_augusti_mtDNA_data

description: Mitochondrial alignment (12S) in .phy format
DOI: 10.5061/dryad.q39h2/1
title: Munoz_2014_AmNat_Dryad

description: Body size, locality, and elevation data for all individuals used in this study.
DOI: 10.5061/dryad.q39h2/2
title: Supp_Mat_Final_June13

description: Supplementary Material.
DOI: 10.5061/dryad.qd1g6/1
title: Results of neutral CPP exp.

description: This data contains nine columns: 1, animal number; 2, the preferred side chamber (CS- chamber) in pretest; 3, treatment (testosterone or saline); 4-5, time (seconds) spent in CS- and CS+ chambers; 6-9, the preference score and difference score for pretest and test.
DOI: 10.5061/dryad.r232g/1
title: Micr_greyseal

description: Excel file with data of 9 microsatellites loci of 22 populations
DOI: 10.5061/dryad.r232g/2
title: Seqdata_greyseal

description: Excel data file with complete data set of the mitochondrial control region sequences.
DOI: 10.5061/dryad.rc628/2
title: cytb prior root stdev mean CA

description: BEAST inout file: Mitochondrial DNA cytochrome b sequences
DOI: 10.5061/dryad.s00vr/1
title: PDB file for TRAP complex

description: The predicted complex of the tripartite ATP-independent periplasmic (TRAP) transporter. It is composed of three proteins: two integral membrane proteins YIAM and YIAN, and one periplasmic protein YIAO. The PDB file was sampled using UniProt E. coli sequences of YIAM_ECOLI, YIAN_ECOLI and YIAO_ECOLI.
DOI: 10.7925/drs1.ucdlib_31993
title: 9 Anne Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 4 levels above ground, constructed 18th century.
description: Dublin City Council, Record of Protected Structures (2010), no. 182
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31996
title: 10 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32002
title: 12 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32008
title: 14 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32014
title: 16 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32020
title: South Anne Street 17A

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32026
title: 19 Anne Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 3 levels above ground, constructed 1860.
description: Dublin City Council, Record of Protected Structures (2010), no. 185
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32032
title: 24 Anne Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed ca. 1900.
description: Dublin City Council, Record of Protected Structures (2010), no. 193
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32038
title: 28 Anne Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Rendered facade structure, 4 levels above ground, constructed ca. 1902.
description: Dublin City Council, Record of Protected Structures (2010), no. 195
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32044
title: 30 Anne Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Rendered facade structure, 4 levels above ground, constructed 18th century.
description: Dublin City Council, Record of Protected Structures (2010), no. 197
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.21f62/11
title: PRKCI_phased

description: PRKCI phased alignment (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/12
title: DARC_phased

description: DARC phased alignment (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/13
title: KITLG_phased

description: KITLG phased alignment (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/14
title: TF_phased

description: TF phased alignment (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/15
title: POLA1_phased

description: POLA1 phased alignment (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/16
title: GRIA3_phased

description: GRIA3 phased alignment (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/17
title: SPTBN1_lnrb

description: SPTBN1 phased alignment of longest non-recombining blocks (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/18
title: PRKCI_lnrb

description: PRKCI phased alignment of longest non-recombining blocks (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.43v0t/1
title: Maternal antibody transfer in free-living and captive mallards

description: From April until June 2010, free-living female mallards were caught from their nest in a woodland area in the Alblasserwaard, the Netherlands. Each captured female was marked with a metal ring, aged and several measurements were collected (tarsus length, head+bill length, wing length, body mass). Blood samples were collected for detection of antibodies to avian influenza virus (AIV). Per clutch two eggs were collected, of which the length and breadth was measured to assess egg volume. Egg yolks were separated to assess maternal antibodies to AIV, embryo size was measured and sex of embryos determined. In the same period, blood samples and several measurements (tarsus length, head+bill length, body mass) were collected from captured females in an outdoor aviary in Heteren, the Netherlands. Four eggs per clutch were collected (one per egg stage), of which the length and breadth was measured. Egg laying order was assessed. Egg yolks were separated and embryo size was measured. Serial dilution was applied to validate the use of OD-values of egg yolk and female serum as a quantitative estimate of antibody concentration.
DOI: 10.5061/dryad.46195/15
title: trinity-assembly-and-probe-alignment-logs.tar.gz

description: Log files from TRINITY probe alignment.
DOI: 10.5061/dryad.46195/16
title: trinity-taxon-set-alignment-data.tar.gz

description: Archive file containing nested directories of TRINITY alignment and analysis data.  See overall README or file-specific README.
DOI: 10.5061/dryad.46195/17
title: in-silico-RENAMED-TIPS.tree

description: In silico tree with tips renamed to full species binomial.
DOI: 10.5061/dryad.46195/18
title: abyss-WITH-SAWFLIES-100-bootrep-RENAMED-TIPS.tree

description: ABySS (with sawfly taxa) tree with tips renamed to full species binomial.
DOI: 10.5061/dryad.46195/19
title: trinity-WITH-SAWFLIES-100-bootrep-RENAMED-TIPS.tree

description: Trinity (with sawfly taxa) tree with tips renamed to full species binomial.
DOI: 10.5061/dryad.46195/20
title: trinity-WITHOUT-SAWFLIES-100-bootrep-RENAMED-TIPS.tree

description: Trinity (*without* sawfly taxa) tree with tips renamed to full species binomial.
DOI: 10.5061/dryad.46195/21
title: Tables.xlsx

description: Excel file of tables in manuscript.
DOI: 10.5061/dryad.53550/1
title: Traits per species and quadrat

description: Data collected in the field including the proportional cover of each species in each sampling unit (20 x 20 cm quadrats). Sampling units are ordered according to its position in an environmental gradient. For each species and sampling unit, up to 10 individual plants were sampled and its functional traits measured (plant height, leaf area and specific leaf area)
DOI: 10.5061/dryad.53550/2
title: Species key

description: Scientific names of the sampled species
DOI: 10.5061/dryad.7mv2b/3
title: pswitchfnext
DOI: 10.5061/dryad.88fm3/1
title: Plant and environmental data

description: Plant species (frequency estimate) and environmental data in each of the 212 plots used in Pellissier et al. (In Review) Mol. Ecol.
DOI: 10.5061/dryad.88fm3/3
title: Fungal OTUs distribution in plots

description: Fungal OTUs distribution in plots
DOI: 10.5061/dryad.99dj8/1
title: AmetPN1.fasta

description: Raw reads for metabarcoding experiment on PN1
DOI: 10.5061/dryad.99dj8/2
title: AmetPN2.fasta

description: Raw reads for metabarcoding experiment on PN2
DOI: 10.5061/dryad.99dj8/3
title: Identifications using metabarcoding

description: Results for metabarcoding based identifications for PN1 and PN2
DOI: 10.5061/dryad.99dj8/4
title: Identifications using metagenomics (paired end)

description: Results for metagenomics based identifications for PN1 and PN2
DOI: 10.5061/dryad.9n1h4/1
title: JEcol Semmartin et al database

description: Raw data included in the study
DOI: 10.5061/dryad.bt963/1
title: Phenotype and cytology raw data for CPB paper

description: Phenotype and cytology raw data for the paper "Morphological, cellular and molecular evidences of chromosome random elimination in vivo upon haploid induction in maize".
DOI: 10.5061/dryad.bt963/2
title: the sequence of SSR markers

description: the sequence of SSR markers for polymorphism analysis in the manuscript and some markers were used for haploid genotype analysis.
DOI: 10.5061/dryad.h2p05/1
title: Symbiodinium fitti multilocus genotypes

description: This file contains multilocus genotype data from 13 haploid microsatellite loci for Symbiodinium ITS-2 type A3, provisionally named Symbiodinium fitti. Please see ReadMe file for important information.
DOI: 10.5061/dryad.j015n/13
title: fish-phylip-files-for-cloudforest-with-pol_sen-and-aci_ful.tar.gz

description: PHYLIP-formatted alignment file for use with CLOUDFOREST.  Polypterus senegalus and  Acipenser fulvescens are present in all alignements.  Alignment matrices may be incomplete for other taxa.
DOI: 10.5061/dryad.ks515/1
title: Megafauna measurements and density

description: This contains the data on megafauna (specially elasipod holothurians) size and density measured using image analysis.
DOI: 10.5061/dryad.ks515/2
title: Holothurian fecal cast data

description: This presents data on fecal cast number, size, volume and production.
DOI: 10.5061/dryad.m69t2/1
title: Bias for red article data

description: The excel file consists of three spreadsheets. The labeling of the spreadsheets and the column headers, together with details in the article, are self-explanatory.
DOI: 10.5061/dryad.nf61r/1
title: Microsatellite raw data of Scyliorhinus canicula
DOI: 10.5061/dryad.p0c10/1
title: Mehrabi et al. The importance of microhabitat for biodiversity sampling dataset

description: Data set for the publication associated with this Dryad data package, on the effects of microhabitat on biodiversity metrics, using dung beetles as a focal taxon. This data set contains a species by site matrix, trap based environmental variables, and species dry biomass estimates. The data set xls. file was created using Microsoft Excel 2011. See README for more details and metadata.
DOI: 10.5061/dryad.p28c8/1
title: Insect occurrences

description: Occurrences of fossil insects (excluding amber specimens) from the Paleobiology Database. Occurrences of holotype specimens are indicated by type_specimen number and type_body_part. All occurrence have associated age (10_my_bin) and environment information.
DOI: 10.5061/dryad.p4n0j/1
title: Dryad_Triponezetal2014

description: AFLP datasets. See Readme for details.
DOI: 10.5061/dryad.s00vr/2
title: PDB file for D-methionine transport system

description: Predicted complex of the D-methionine transporter. It is an ATP-driven transport system that transports methionine. The PDB file was sampled using UniProt E. coli sequences of METI_ECOLI and METQ_ECOLI.
DOI: 10.5061/dryad.s00vr/3
title: PDB file for Tripartite efflux system

description: Predicted complex for the Tripartite efflux pump. This family of complexes spans both the inner and outer membrane, and are widely used in bacteria to pump toxic compounds out of the cell. The PDB file was modeled using E. coli sequences of MDTP_ECOLI and MDTN_ECOLI.
DOI: 10.5061/dryad.s00vr/4
title: PDB file for PFL Complex

description: Predicted complex of Pyruvate formate lyase-activating enzyme. Pyruvate formate-lyase (PFL) catalyzes the reaction of acetyl-CoA and formate from pyruvate and CoA in the Fermentation pathway. The PDB file was sampled using the E. coli sequences of PFLA_ECOLI and PFLB_ECOLI.
DOI: 10.5061/dryad.s00vr/5
title: Ribosome 50S alignments

description: Multiple sequence alignments used in the Ribosome 50S analysis. Each fasta file begins with the T. thermophilus amino acid sequence pair, with other homologous sequences trimmed to match its length. For an interactive list, please visit: http://gremlin.bakerlab.org/cplx.php?mode=ribo
DOI: 10.5061/dryad.s00vr/6
title: E. coli paired alignments

description: Multiple sequence alignments used in E. coli gene pair analysis. Each fasta file begins with the E. coli amino acid sequence pair, with other homologous sequences trimmed to match its length. For an interactive list, please visit: http://gremlin.bakerlab.org/cplx.php?mode=ecoli
DOI: 10.5061/dryad.s00vr/7
title: PDB benchmark alignments

description: Multiple sequence alignments used for the PDB benchmark set. Each fasta file begins with the PDB amino acid sequence pair, with other homologous sequences trimmed to match its length. For an interactive list, please visit: http://gremlin.bakerlab.org/cplx.php?mode=pdb
DOI: 10.5061/dryad.s00vr/8
title: PDB benchmark alignments NDX

description: Multiple sequence alignments used for the PDB benchmark set. This set is restricted to the NADH dehydrogenase complex. Each fasta file begins with the T. thermophilus amino acid sequence pair, with other homologous sequences trimmed to match its length. For an interactive list, please visit: http://gremlin.bakerlab.org/cplx.php?mode=ndx
DOI: 10.7925/drs1.ucdlib_32050
title: 32 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32056
title: 34 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32062
title: 31 King Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.