cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25376728.v1
title: Syntheseus retro star benchmark data

description: This is the supporting dataset for the syntheseus retro star benchmark (code). This data was originally published by Chen et al (2020) as part of the retro* paper, supported by code here. However, the models and datasets to support this code are only available from a Dropbox link. To ensure access into the future, I have uploaded and renamed some important files here (in accordance with the original MIT license).The renamed files are:190-hard-test-routes.pkl (originally called "routes_possible_test_hard.pkl") contains the test molecules and some synthesis routespretrained-reaction-model.ckpt (originally "saved_rollout_state_1_2048.ckpt") is the weights for the template-classification reaction model)value-function-checkpoint.pt (originally "best_epoch_final_4.pt") is the weights for the learned value functionORIGINAL-inventory.csv.gz (originally "origin_dict.csv") is the list of purchasable moleculestemplate_rules_1.dat is the list of templates.
DOI: 10.6084/m9.figshare.3808329.v9
title: Clumped isotope evidence for episodic, rapid flow of fluids in a mineralized fault system in the Peak District, UK

description: Supplemetary information for the paper:<br>Clumped isotope evidence for episodic, rapid flow of fluids in a mineralized fault system in the Peak District, UK<br><br>submitted to the Journal of the Geological Society, London
DOI: 10.17632/28vbph649k
title: Research on real-time online detection of forging stock dimensions based on improved YOLO and transfer learning

description: Data and code for "Study on real-time online detection of forging stock dimensions based on improved YOLOv5s".
DOI: 10.6084/m9.figshare.14318607.v1
title: Makgeolli - The Traditional Choice of Korean Fermented Beverage from Cereal: An Overview on its Composition and Health Benefits

description: Abstract Food is a very basic survival need for the sustenance of life and it always register its impact along with beverages. Varieties of alcoholic/non-alcoholic beverages were invented globally under the influence of cultural topography, which drastically differ in western and eastern tradition. One such traditional Korean fermented beverage is Makgeolli, which is popularly known as “Korean rice wine” made wholly from rice and other cereal such as wheat, barley, and germinated grains by the process of fermentation using a main natural ingredient Nuruk, an amylase enzyme “source”. The low alcohol content (6-9%) of Makgeolli with antioxidant constituents and benefiacial polyphenols like resveratrol, quercetin etc. endowing an interesting light sparkling tone of prominent astringency. The composition of fresh Makgeolli with significant amounts of lactic acid bacteria such as Lactobacillus, as well as starch, proteins, dietary fibers, free amino acids, vitamin nutrients and bioactive components are considered to be benefial to health, but it should be considered within that frame, since it is still an alcohol. The Makgeolli is considered as a probiotic liquor and claim detonated health benefits, often compared to yoghurt. In this short review, we mainly emphasize the composition of Makgeolli and offer a glimpse to its potential health benefits.
DOI: 10.6084/m9.figshare.22434493.v1
title: Supplementary Material for: Senescent tumor cells are frequently present at the invasion front - implications for improving disease control in patients with locally advanced prostate cancer

description: Introduction: Local tumor invasion is a critical factor for the outcome of men with prostate cancer. In particular seminal vesicle invasion (SVI) has been reported to be associated with a more unfavorable prognosis. A better understanding of the functional state of invading prostate cancer cells is crucial to develop novel therapeutic strategies for patients with locally advanced disease. Methods: The prognostic impact of local tumor progression was ascertained in over 1,000 men with prostate cancer. Prostate cancer specimens were stained by double-immunohistochemistry for the proliferation marker Ki-67 and the senescence marker p16INK4A. The migratory properties of senescent prostate cancer cells were analyzed in vitro using a wound healing assay and immunofluorescence microscopy for p16INK4A. Results: We confirm the notion that patients with SVI have a more unfavorable prognosis than patients with extraprostatic extension alone. Surprisingly, we found that the tumor invasion front frequently harbors p16INK4A positive and Ki-67 negative i.e., senescent, tumor cells. While the intraprostatic tumor periphery was a hotspot for both proliferation and expression of p16INK4A, the area of SVI showed less proliferative activity but was at the same time a hotspot of cells with increased nuclear p16INK4A expression. Senescence was associated with an accelerated migration of prostate cancer cells in vitro. Discussion/Conclusion: This proof-of-concept study shows that invading prostate cancer cells frequently show signs of cellular senescence. This finding may open new avenues for neoadjuvant and adjuvant treatment concepts in men with locally advanced prostate cancer.
DOI: 10.6084/m9.figshare.22776431.v1
title: Surveying the Relevance of the Critical Success Factors of Agile Transformation Initiatives from a Project Management Perspective

description: Planilha com os resultados extraídos.
DOI: 10.6084/m9.figshare.29002487.v1
title: 1.5. Y Pearson's Correlation Pre-test (Underlying Data) - Doomscrolling and Information Overload on Generation Z: Examining the Link Between Excessive Digital Media Consumption and Stress Level

description: Pre-test analysis Y variable (excessive digital media consumption) results using IBM SPSS Statistics 26 for research title "Doomscrolling and Information Overload on Generation Z: Examining the Link Between Excessive Digital Media Consumption and Stress Level".
DOI: 10.6084/m9.figshare.9994706.v2
title: Benchmark analysis of coiled-coil prediction tools

description: This repository contains the raw data for the publication "Protein function prediction in genomes: Critical assessment of coiled-coil predictions based on protein structure data". The tar file contains all the millions of files, sorted by the first letters of the PDB ids, containing the PDBs, sequences, and predictions. The database dump contains the database.<br>
DOI: 10.17605/osf.io/6j8sm
title: Motor_Adaptation_VMR_Joystick_Stable_and_Random

description: A dataset with reaching movement motor adaptation performed by 20 healthy human participants using a joystick. Some trials had +/- 30 deg visuomotor rotation applied. For different targets. Offline visual endpoint feedback. Collected at NIH in 2019
DOI: 10.17632/44kjgc4gkc
title: GYMNSA dataset

description: Annotated image dataset with different stages of European pear rust in orchards for UAV-based automatic symptom detection. 

The evaluation of fruit genetic resources regarding a resistance to pathogens is an essential basis for subsequent selection in fruit breeding. Both genetic analysis and phenotyping of defined traits are important tools and provide decision data in the evaluation process. However, the phenotyping of plants is often carried out "by hand" and remains the bottleneck in fruit breeding and fruit growing. The development of a digital and UAV (unmanned aerial vehicle)-based phenotyping method for the assessment of genotype-specific susceptibility or resistance against diseases in orchards would significantly increase the efficiency of plant breeding. In this framework, a workflow for drone-based monitoring of pathogens in orchards was developed using the European pear rust (Gymnosporangium sabinae) as model pathogen. We provide a dataset with expert-annotated high-resolution RGB images with pear rust symptoms. The UAV images present different pear genotypes, including varieties, wild species and progeny from breeding. The dataset contains manually labelled images with a size of 768 x 768 pixels of leaves infected with pear rust at different stages of development, labelled as class GYMNSA, as well as background images without symptoms. A total of 584 annotated images and 162 background images, organized into a training and validation set, are included in the GYMNSA dataset. This dataset can be used as a resource for researchers and developers working on drone-based plant disease monitoring systems.
DOI: 10.17632/79j56f43b8
title: 2021JB023630-FT_data

description: This is the open source fission-track data presented in Nakajima et al. (Denudation process of crystalline nappes in a continental collision zone constrained by inversion of fission-track data and thermokinematic forward modeling: an example from eastern Nepalese Himalaya: 2021JB023630).
DOI: 10.17632/z663mcwx72
title: Acoustic Nature of Sound Waves in the Universe

description: Scientific Research Data

Project Title: Analysis of the Acoustic Nature of Sound Waves in the Universe (Federal University of Paraíba - UFPB, Federal Process Nº 23074.035981/2020-38).

Coordination: Prof. André Vieira Sonoda (Department of Digital Media - DEMID/ Federal University of Paraíba - UFPB).

Institutional Links: 
Department of Digital Media - Federal University of Paraíba (DEMID/ UFPB); 
Graduate Program in Music (PPGM/ UFPB); 
Research Group - Environmental Comfort and Energy Efficiency in Buildings and the Urban Environment - National Council for Scientific and Technological Development (CNPq); 
Ethnomusicology Nucleus - Federal University of Pernanbuco (UFPE).

The hypothesis proposed an impossibility of audible aspects in physical environments or vacuum contexts based on biophysical and mathematical concepts, in addition to acoustic analyses.

The data show the cognitive nature of the audible aspects; physico-structural similarities between audible and inaudible sound waves; direct relations between the differences in timbre and the amplitude of the individual harmonics of the harmonic series of mechanical waves (sound waves), as well as the brain’s ability to interpret electro-neurological pulses generated in the auditory process.

It was concluded that the universe is silent in physical or vacuum mediums. In addition, the biophysical literature, associated with the brain’s ability to interpret electro-neurological pulses from the auditory transduction process, suggests a scientific plausibility of communication between electromagnetic devices and the animal brain, as well as technologically assisted telepathic communication.
DOI: 10.6084/m9.figshare.16569399.v1
title: Doctoral Exam Survey Results

description: These are aggregate survey results from a survey distributed in September 2020.
DOI: 10.6084/m9.figshare.21803292.v1
title: Scans of film damage

description: Empty scans of 35mm film frames with artifacts. Emulsion: Lomochrome Purple Development process: C41 Scanner: Plustek OpticFilm 7600i Scanning software: Silverfast 9 Scanning DPI: 300 Scanned to 16-bit B&W tiff and converted to JPG using Lightroom with no compression. We manually annotate individual artifacts in the scans with<br> bounding polygons, and classify each as dirt, dust, long hair, short hair or scratch. We extract each individual artifact, zero padded to square, to create a bank of isolated artifacts to sample from when generating new overlays. In total we have annotated 12135 artifacts across the 10 scanned frames. Annotations for each scan are included in JSON format, and can easily be converted to OpenCV contour format. <br>
DOI: 10.6084/m9.figshare.23808258.v1
title: ECPC-IDS

description: ECPC-IDS contains a total of 7159 images in two formats, PNG and DICOM formats, and 3579 XML files with annotation information.This is the first publicly available dataset of endometrial cancer with a large number of multiple images, including a large amount of information required for image and target detection. ECPC-IDS can aid researchers in exploring new algorithms to enhance computer-assisted technology.
DOI: 10.6084/m9.figshare.5099842.v5
title: Input files for the comparison of visual-audio encounter surveys and eDNA metabarcoding of species-rich tropical frog communities

description: Input files for the comparison of visual-audio encounter surveys and eDNA metabarcoding of species-rich tropical frog communities
DOI: 10.6084/m9.figshare.11496954.v1
title: Analyzed data

description: See README for description
DOI: 10.6084/m9.figshare.28033667.v1
title: Supplementary Material for: An ACTH-Producing Neuroendocrine Tumor –Clinical Course of Multidisciplinary Therapy Including Peptide Receptor Radionuclide Therapy; case report–

description: Background; Clinical experiences of peptide receptor radionuclide therapy (PRRT) in patients with adrenocorticotropic hormone (ACTH) - producing neuroendocrine tumor were extremely rare. 
Case presentation; A 60-year-old woman with hypertension, lower-extremity edema, hypoalbuminemia, hypokalemia, and multiple hepatic tumors was hospitalized for further examination and treatment. Endocrine testing detected excessive levels of ACTH and cortisol in her blood. Pathohistological examination revealed the hepatic lesions to be ACTH-positive grade 2 neuroendocrine tumors (NET; G2). A diagnosis of ectopic ACTH-producing NET was made. The patient was initially treated with the 11-hydroxylase inhibitor, metyrapone, to control hypercortisolemia and the long-acting somatostatin analogue, lanreotide. Simultaneously, everolimus was continued for about 1 year. Subsequently, hepatic tumors were surgically resected, leading to successful and rapid normalization of ACTH secretion and resolution of hypercortisolemia. However, the disease relapsed and presented with multiple hepatic masses and increased ACTH 18 months after surgery. As sunitinib and subsequent streptozocin chemotherapy failed to control the disease, PRRT with 177Lu-DOTATATE was performed.
Intervention; ACTH levels increased after initiation of PRRT, and clinical manifestations, such as pigmentation, hypertension, and hyperglycemia, were remarkable. The patient was treated with antihypertensive and antidiabetes agents, and required increased dose of metyrapone and addition of the cortisol biosynthesis inhibitor, osilodrostat. After four cycles of PRRT, the hepatic tumors showed remarkable reduction in size with normalization of ACTH level and withdrawal of cortisol synthesis inhibitors. 
Conclusion; Although PRRT was effective, we should consider the occurrence of hormonal crisis during the therapy. Due to the rarity and complexity of hormone-producing tumors, cooperation between medical oncologists and endocrinologists is important for patient management.
DOI: 10.6084/m9.figshare.3512111.v1
title: Appendix B. Deer ranking of vegetation cover types based on the distribution of the different vegetation types within the individuals' home range.

description: Deer ranking of vegetation cover types based on the distribution of the different vegetation types within the individuals' home range.
DOI: 10.6084/m9.figshare.14330795.v13
title: Dexamethasone modulates immature neutrophils and interferon programming in severe COVID-19

description: While critical for host defense, innate immune cells are also pathologic drivers of acute respiratory distress syndrome (ARDS). Innate immune dynamics during COVID-19 ARDS, compared to ARDS from other respiratory pathogens, is unclear. Moreover, mechanisms underlying beneficial effects of dexamethasone during severe COVID-19 remain elusive. Using scRNA-seq and plasma proteomics, we discovered that compared to bacterial ARDS, COVID-19 was associated with distinct neutrophil polarization characterized by interferon (IFN) and prostaglandin (PG) active states. Dexamethasone during severe COVID-19 depleted circulating neutrophils, altered IFN<sup>active</sup> neutrophils, downregulated interferon-stimulated gene, and activated IL1R2<sup>+ve</sup> neutrophils. Dexamethasone also expanded immature neutrophils expressing immunosuppressive molecules and remodeled cellular interactions by changing neutrophils from information receivers into information providers. Male patients had higher proportions of IFN<sup>active</sup> neutrophils, preferential steroid-induced immature neutrophil expansion, and possibly different effects on outcome. Our single-cell atlas (www.biernaskielab.ca/COVID_neutrophil) defines COVID-19-enriched neutrophil states and molecular mechanisms of dexamethasone action to develop targeted immunotherapies for severe COVID-19.<br>
DOI: 10.6084/m9.figshare.25296001.v2
title: Dataset of all outcome results for flow in 36 3-D fractures from DNS

description: This dataset comprises flow for 36 fracture models at various Reynolds numbers, including Pressure gradient loss, Flow rate, Reynolds number, Eddy volume ratio, Average mechanic aperture, Roughness, Hurst exponents, Surface roughness coefficient, Viscous coefficient, Inertia coefficient, Inertial hydraulic aperture, Non-Darcy factor, Fracture number, and Fracture type.<br>
DOI: 10.6084/m9.figshare.26355829.v2
title: Chromosome-scale genome assembly of <i>Trigonella corniculata (L.)L.</i> (Nagauri pan /Kasuri methi), an important spice

description: The files provide details of genome annotation for <i>Trigonella corniculata</i>. The FASTA sequences of the predicted genes (<i>T.corniculata</i>_genes), coding sequences (<i>T.corniculata</i>_CDS) and proteins (<i>T.corniculata</i>_protein) are provided. The GFF file (<i>T.corniculata</i>_GFF) and a file with details of GO and KEGG annotation (<i>T.corniculata</i>_annotation) are also provided. In these files the gene name is denoted with a prefix "Km" which stands for "Kasuri methi", the common name for <i>T. corniculata</i>.
DOI: 10.6084/m9.figshare.28512851.v1
title: Global Yearly Forest Height in 2000-2020

description: This dataset describes Global Tree Height(HT) by GEDI and MODIS GLASS Dataset in 2001-2020.The Spatial resolution of thisdataset is 0.00833333 degree in GCS_WGS_1984.The HT data based on GEDI SAWA indices in 2020 was used as a benchmark data,indices dervied from MODIS Global lAnd Surface Satellite (GLASS) datasets in 2020 were used to retrieval the HT.Different retrieval models were developed by Random Forest considering different forest types from MODIS MCD12Q1 Dataset within different continents. The final map in 2000-2020 were extracted by the information from MODIS GLASS datasaet with the models. The overall accuracy of the datasets are close to 75%.
DOI: 10.6084/m9.figshare.7951157.v1
title: Supplementary Material for: Risk Factors for Late-Onset Sepsis in Preterm Infants: A Multicenter Case-Control Study

description: <b><i>Background:</i></b> Late-onset sepsis (LOS) in preterm infants is a leading cause of mortality and morbidity. Timely recognition and initiation of antibiotics are important factors for improved outcomes. Identification of risk factors could allow selection of infants at an increased risk for LOS. <b><i>Objectives:</i></b> The aim was to identify risk factors for LOS. <b><i>Methods:</i></b> In this multicenter case-control study, preterm infants born at ≤30 weeks of gestation were included at 9 neonatal intensive care units. Detailed demographical and clinical data were collected daily up to day 28 postnatally. Clinical and demographic risk factors were identified using univariate and multivariate regression analyses in a 1: 1 matched case-control cohort. <b><i>Results:</i></b> In total, 755 infants were included, including 194 LOS cases (41 gram-negative cases, 152 gram-positive cases, and 1 fungus). In the case-control cohort, every additional day of parenteral feeding increased the risk for LOS (adjusted OR = 1.29; 95% CI 1.07–1.55; <i>p</i> = 0.006), whereas antibiotics administration decreased this risk (OR = 0.08; 95% CI 0.01–0.88; <i>p</i> = 0.039). These findings could largely be attributed to specific LOS-causative pathogens, since these predictive factors could be identified for gram-positive, but not for gram-negative, LOS cases. Specifically cephalosporins administration prior to clinical onset was inversely related to coagulase-negative staphylococcus LOS (CoNS-LOS) development. Formula feeding was an independent risk factor for development of CoNS-LOS (OR = 3.779; 95% CI 1.257–11.363; <i>p</i> = 0.018). <b><i>Conclusion:</i></b> The length of parenteral feeding was associated with LOS, whereas breastmilk administration was protective against CoNS-LOS. A rapid advancement of enteral feeding, preferably with breastmilk, may proportionally reduce the number of parenteral feeding days and consequently the risk for LOS.
DOI: 10.6084/m9.figshare.16437891.v2
title: Statistical analyses applied to data from amino acid sequencing and molecular modelling

description: This file presents statistical analyses of data relating to peptide sequences.
DOI: 10.6084/m9.figshare.21086572.v2
title: Main datasets for Shen et. al., 2022

description: Main datasets for Shen et. al., 2022
DOI: 10.6084/m9.figshare.645332.v1
title: Predicting Amphibian Population Declines in Central America

description: Codes for amphibian species traits used in models in Lips et al. 2003 Ecological Traits Predicting Amphibian Population Declines in Central America. Conservation Biology 17(4): 1078–1088. DOI: 10.1046/j.1523-1739.2003.01623.x Full description of data and sources in paper (link below), or by contacting author (klips@umd.edu).
DOI: 10.17632/295b2nmnhc
title: Enhancing Concrete Sustainability with Waste Polythene and Fiber-Reinforced Polymers for Strength and Lightweight Performance.

description: Today, concrete stands as the most frequently utilized construction material across the globe. The construction industry commonly grapples with issues related to the deterioration of concrete structures. In such situations, numerous methods have been devised to enhance the stability of concrete structures.