cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.53qb3
title: Data from: Developmental experience with anthropogenic noise hinders adult mate location in an acoustically signaling invertebrate

description: Phenotypic plasticity facilitates survival and reproduction in rapidly
 changing and novel environments. Traffic noise spectrally overlaps with
 (i.e., masks) the sounds used by many acoustically signaling organisms to
 locate and secure mates. To determine if pre-reproductive exposure to
 noise improves adult performance in noisy environments, we reared field
 crickets (Teleogryllus oceanicus) in one of three noise environments:
 masking traffic noise, traffic noise from which frequencies that
 spectrally overlap with the crickets’ song were removed (non-masking), or
 silence. At reproductive maturity, we tested female mate location ability
 under one of the same three acoustic conditions. We found that exposure to
 noise during rearing hindered female location of mates, regardless of the
 acoustic environment at testing. Females reared in masking noise took 80%
 longer than females reared in silence to locate a simulated singing male
 who was &lt;1m away. Impaired mate location ability can be added to a
 growing list of fitness costs associated with anthropogenic noise,
 alongside reductions in pairing success, nesting success, and offspring
 survival.
description: Data from: Developmental
 experience with anthropogenic noise hinders adult mate location in an
 acoustically signalling invertebrateA csv data file
 containing data required to recreate the tables and figures in
 Gurule-Small and Tinghitella "Developmental experience with
 anthropogenic noise hinders adult mate location in an acoustically
 signalling invertebrate". Data were analyzed in JMP Pro
 13.0.Gurule-Small and
 Tinghitella_Anthropogenic Noise and Crickets Data
 FINAL.csv
DOI: 10.6084/m9.figshare.31136182
title: Raw data from FTIR, XRD, and histomorphometric analyses of osteoporotic and osteoarthritic bone tissue samples.

description: Bone tissue samples collected from osteoporotic and osteoarthritic patients were analyzed to evaluate their mineral and organic composition using Fourier Transform Infrared Spectroscopy (FTIR) and X-ray Diffraction (XRD). Physicochemical properties were assessed, and trabecular thickness as well as bone area fraction over total tissue area were calculated from histological sections.
DOI: 10.6084/m9.figshare.31136182.v1
title: Raw data from FTIR, XRD, and histomorphometric analyses of osteoporotic and osteoarthritic bone tissue samples.

description: Bone tissue samples collected from osteoporotic and osteoarthritic patients were analyzed to evaluate their mineral and organic composition using Fourier Transform Infrared Spectroscopy (FTIR) and X-ray Diffraction (XRD). Physicochemical properties were assessed, and trabecular thickness as well as bone area fraction over total tissue area were calculated from histological sections.
DOI: 10.5061/dryad.8q2kg02
title: Data from: Energetic increases lead to niche packing in deep-sea wood falls

description: Mechanisms leading to variation in diversity over energetic gradients
 continue to challenge ecologists. Changes in diversity may reflect the
 environmental capacity to support species’ coexistence through increased
 niche packing or niche space expansion. Current ecological theory predicts
 increases of energy may lead to both scenarios but not their relative
 strengths. We use experimental deep-sea, wood-fall communities, where
 energy supply can be controlled, to test for the importance of niche
 expansion and packing in functional space over an energetic gradient.
 Invertebrate communities were identified and counted from 16 Acacia sp.
 logs ranging in size from 0.6 to 20.6 kg in mass (corresponding to energy
 availability) deployed at 3203 m in the Pacific Ocean for 5 years. We use
 four fundamental energetic species-level functional traits--food source,
 trophic category, motility, and tiering--to characterize species niches.
 Increases in energy on wood falls lead to increases of species richness.
 This higher species richness resulted from a substantial increase in mean
 niche overlap, suggesting that increases in energy may afford reduced
 competition.
description: McClain Wood Fall by
 Species Datawoodfall_species.csvMcClain Wood-Fall Species by Trait Datawoodfall_trait.csv
DOI: 10.5061/dryad.3978f
title: Data from: Evidence that hepatitis C virus genome partly controls infection outcome

description: Infection by hepatitis C virus (HCV) leads to one of two outcomes; either
 the infection resolves within approximately 6 months or the virus can
 persist indefinitely. Host genetics are known to affect the likelihood of
 clearance or persistence. By contrast, the importance of the virus
 genotype in determining infection outcome is unknown, as quantifying this
 effect traditionally requires well-characterized transmission networks,
 which are rare. Extending phylogenetic approaches previously developed to
 estimate the virus control over set-point viral load in HIV-1 infections,
 we simulate inheritance of a binary trait along a phylogenetic tree, use
 this data to quantify how infection outcomes cluster and ascertain the
 effect of virus genotype on these. We apply our method to the Hepatitis C
 Incidence and Transmission Study in prisons (HITS-p) data set from
 Australia, as this cohort prospectively identified incident cases
 including viraemic subjects who ultimately clear the virus, thus providing
 us with a unique collection of sequences from clearing infections. We
 detect significant correlations between infection outcome and virus
 distance in the phylogeny for viruses of Genotype 1, with estimates lying
 at around 67%. No statistically significant estimates were obtained for
 viruses of Genotype 3a.
description: HartfieldetalHCVAnalysisREADME.TXT FOR SIMULATION FILES. This file is the source code for the Phylogenetic analysis used in the Hartfield et al. paper "Evidence that HCV genome partly controls infection outcome". Simulations are written in R (http://www.r-project.org/). Files included are: - HeritibilitySim.R: Simulating trait transmission along a tree. - Randomisation.R: Analysis of the true and randomised tipset data to determine estimates of phylogenetic signal. - BT_Rand.sh: Shell script to automate analysis of randomisation tip analysis. - command.txt: File needed to run BayesTraits analysis from shell prompt. - G1HITS_state.txt: Example tipset file (chronic/clearer outcome for genotype 1 data). See blurb at start of each program for description and how to execute. Please also note that R code uses the 'ape' package for R, which needs to be installed prior to execution. The full analysis also uses the BayesTraits package, available from http://www.evolution.rdg.ac.uk/BayesTraits.html. Comments should be sent to Matthew Hartfield (matthew.hartfield@ird.fr).
DOI: 10.5061/dryad.b7d7v
title: Data from: Blood does not buy goodwill: allowing culling increases poaching of a large carnivore

description: Quantifying environmental crime and the effectiveness of policy
 interventions is difficult because perpetrators typically conceal
 evidence. To prevent illegal uses of natural resources, such as poaching
 endangered species, governments have advocated granting policy flexibility
 to local authorities by liberalizing culling or hunting of large
 carnivores. We present the first quantitative evaluation of the hypothesis
 that liberalizing culling will reduce poaching and improve population
 status of an endangered carnivore. We show that allowing wolf (Canis
 lupus) culling was substantially more likely to increase poaching than
 reduce it. Replicated, quasi-experimental changes in wolf policies in
 Wisconsin and Michigan, USA, revealed that a repeated policy signal to
 allow state culling triggered repeated slowdowns in wolf population
 growth, irrespective of the policy implementation measured as the number
 of wolves killed. The most likely explanation for these slowdowns was
 poaching and alternative explanations found no support. When the
 government kills a protected species, the perceived value of each
 individual of that species may decline; so liberalizing wolf culling may
 have sent a negative message about the value of wolves or acceptability of
 poaching. Our results suggest that granting management flexibility for
 endangered species to address illegal behaviour may instead promote such
 behaviour.
description: Wolf data for Wisconsin
 and MichiganWolf population size,
 culling quota, days with delisting or culling allowed, wolf area, pack
 size and reproductionchapron_treves_2016.Rdata
DOI: 10.5061/dryad.vs4d3
title: Data from: An introduced parasitic fly may lead to local extinction of Darwin's finch populations

description: Introduced pathogens and other parasites are often implicated in host
 population-level declines and extinctions. However, such claims are rarely
 supported by rigorous real-time data. Indeed, the threat of introduced
 parasites often goes unnoticed until after host populations have declined
 severely. The recent introduction of the parasitic nest fly, Philornis
 downsi, to the Galápagos Islands provides an opportunity to monitor the
 current impact of an invasive parasite on endemic land bird populations,
 including Darwin's finches. In this paper, we present a population
 viability model to explore the potential long-term effect of P. downsi on
 Darwin's finch populations. The goal of our study was to determine
 whether P. downsi has the potential to drive host populations to
 extinction and whether management efforts are likely to be effective. Our
 model is based on data from five years of experimental field work
 documenting the effect of P. downsi on the reproductive success of medium
 ground finch Geospiza fortis populations on Santa Cruz Island. Under two
 of the three scenarios tested, the model predicted medium ground finches
 are at risk of extinction within the next century. However, sensitivity
 analyses reveal that even a modest reduction in the prevalence of the
 parasite could improve the stability of finch populations. We discuss the
 practicality of several management options aimed at achieving this goal.
 Synthesis and applications. Our study demonstrates the predicted high risk
 of local extinction of an abundant host species, the medium ground finch
 G. fortis due to an introduced parasite, P. downsi. However, our study
 further suggests that careful management practices aimed at reducing
 parasite prevalence have the potential to significantly lower the risk of
 host species extinction.
description: Koopetal_MatlabcodeFile contains MatLab code necessary for running model simulations.Koop_DryadDataSubmissionFile contains raw data used to calculate most model parameters.
DOI: 10.5061/dryad.506g4
title: Data from: Evolution of complex asexual reproductive strategies in jellyfish

description: Many living organisms in terrestrial and aquatic ecosystems rely on
 multiple reproductive strategies to reduce the risks of extinction in
 variable environments. Examples are provided by the polyp stage of several
 bloom-forming jellyfish species, which can reproduce asexually using
 different "budding" strategies. These strategies broadly fall
 into three categories: 1) fast localized reproduction, 2) dormant cysts,
 or 3) motile and dispersing buds. Similar functional strategies are also
 present in other groups of species. However, mechanisms leading to the
 evolution of this rich reproductive diversity are yet to be clarified.
 Here we propose an evolutionary model for jellyfish polyps and determine
 how local population extinction and unequal fitness of the three modes can
 drive the evolution of multiple reproductive strategies. Depending on
 environmental parameters, we find that evolution leads to a unique
 evolutionary stable strategy, where in general multiple reproductive modes
 coexist. As the extinction risk increases, this strategy shifts from a
 pure budding mode to a dual strategy, and finally to one characterized by
 allocation into all three modes. We determine the existence of relative
 fitness-dependent thresholds in extinction risk where these transitions
 can occur and discuss our predictions in light of observations on polyp
 reproduction in laboratory and natural systems.
description: ModelCode for
 Schnedler-Meyer et al. 2018This compressed folder
 contains the neccessary MATLAB code for running our basic model and
 evolutionary algorithm.SchnedlerMeyer_et_al_2018.zip
DOI: 10.5061/dryad.b859k
title: Data from: Minimally invasive collection of adipose tissue facilitates the study of eco-physiology in small-bodied mammals

description: Adipose tissue is the primary fuel storage for vertebrates and is an
 important component of energy budgets during periods of peak energetic
 demands. Investigating the composition of adipose tissue can provide
 information about energetics, migration, reproduction and other
 life-history traits. Until now, most field methods for sampling adipose
 tissue of small-bodied vertebrates have been destructive. Therefore,
 investigations of adipose tissue in small-bodied vertebrates have been
 limited in their broadscale application. We developed a field-ready
 micro-adipose biopsy method for sampling adipose tissue of small-bodied
 vertebrates, by adopting fine-needle adipose aspiration. We applied the
 method to silver-haired bats (Lasionycteris noctivagans) and then
 quantified the resulting fatty acid signatures of a summer group and an
 autumn group to demonstrate one possible application of the method. We
 successfully obtained interpretable fatty acid signatures from 74·5% of
 micro-adipose biopsy attempts, with success positively correlated with
 body mass index. Summer and autumn groups of bats had different fatty acid
 signatures likely representing varied available dietary compositions at
 resident sites (the habitat where adipose deposits are accumulated prior
 to migration). The fatty acid profile of autumn silver-haired bats was
 largely characterized by 16:0, 18:1 and 14:0, and the summer group was
 characterized by 16:0, 16:1 and 18:0. Our results suggest that fatty acid
 signatures have the potential to characterize the origins of migrating
 individuals, or the number of unique subpopulations being supported by a
 migration route. This field-ready fine-needle adipose aspiration method
 can be used on small-bodied mammals and modified for application to other
 small-bodied vertebrates. This non-destructive approach to sampling
 adipose tissue has great value because it allows for robust sample sizes,
 longitudinal studies of the same individuals across space and time, and
 sampling of rare, threatened and endangered species.
description: clerc_et_al_data.zip file containing two data files. clerc_et_el_adiposedata is the data that was used to compare the fatty acid compositions of the two groups of silver-haired bats. clerc_et_al_BMI_adiposedata is the data that was used to compare the body mass index of individuals that were successfully adipose biopsied and those that were unsuccessfully adipose biopsied
DOI: 10.5061/dryad.d4j56
title: Data from: Cuckoos host range is associated positively with distribution range and negatively with evolutionary uniqueness

description: 1. The evolutionary distinctiveness (ED) score is a measure of
 phylogenetic isolation that quantifies the evolutionary uniqueness of a
 species. 2. Here, we compared the ED score of parasitic and non-parasitic
 cuckoo species worldwide, to understand whether parental care or
 parasitism represent the largest amount of phylogenetic uniqueness. Next,
 we focused only on 46 cuckoo species characterized by brood parasitism
 with a known number of host species, we explored the associations among ED
 score, number of host species and breeding range size for these species.
 We assessed these associations using phylogenetic generalized least
 squares (PGLS) models, taking into account the phylogenetic signal. 3.
 Parasitic cuckoo species were not more unique in terms of evolutionary
 distinctiveness than non-parasitic species. However, we found a
 significant negative association between the evolutionary uniqueness and
 host range, and a positive correlation between the number of host species
 and range size of parasitic cuckoos, probably suggesting a passive
 sampling of hosts by parasitic species as the breeding range broadens. 4.
 The findings of this study showed that more generalist brood parasites
 occupied very different positions in a phylogenetic tree, suggesting that
 they have evolved independently within the Cuculiformes order. Finally, we
 demonstrated that specialist cuckoo species also represent the most
 evolutionarily unique species in the order of Cuculiformes.
description: data Morelli et al. 2017
 JAEList of Cuculidae
 species used in this study, common names, parasite behavior, number of
 host species, breeding distribution range and evolutionary distinctiveness
 (ED) score. The number of hosts for each cuckoo species was obtained from
 a literature review (Davies 2000; Erritzøe et al. 2012; Yang et al. 2012).
 The breeding distribution range was obtained from IUCN (IUCN &
 BirdLife International 2017) and ED score was downloaded from Edge of
 Existence (Zoological Society of London 2008).
DOI: 10.5061/dryad.6mv07
title: Data from: The “Dr Jekyll and Mr Hyde fungus”: noble rot versus gray mold symptoms of Botrytis cinerea on grapes

description: Many cryptic species have recently been discovered in fungi, especially in
 fungal plant pathogens. Cryptic fungal species co-occurring in sympatry
 may occupy slightly different ecological niches, for example infecting the
 same crop plant but specialized on different organs or having different
 phenologies. Identifying cryptic species in fungal pathogens of crops and
 determining their ecological specialization is therefore crucial for
 disease management. Here we addressed this question in the ascomycete
 Botrytis cinerea, the agent of grey mold on a wide range of plants. On
 grape, B. cinerea causes severe damages but is also responsible for noble
 rot used for processing sweet wines. We used microsatellite genotyping and
 clustering methods to elucidate whether isolates sampled on grey mold vs.
 noble rot symptoms in three French regions belong to genetically
 differentiated populations. The inferred population structure matched
 geography rather than the type of symptom. Noble rot symptoms therefore do
 not seem caused by a specific B. cinerea population but instead seem to
 depend essentially on microclimatic conditions, which has applied
 consequences for the production of sweet wines.
description: Microsatellite
 genotyping of Botrytis cinerea grey mold and noble rot populations in
 FranceMicrosatellite
 genotyping using 8 markers. Populations of B. cinerea collected in the
 field, in 3 wine-producing French regions, from grey mold and nobel rot
 symptoms. Data are given in allele size in bp (haploid data). 0 indicate
 missing values.PGPN2011.csv
DOI: 10.5061/dryad.9g263
title: Data from: An overlooked plant-parakeet mutualism counteracts human overharvesting on an endangered tree

description: The exponential growth of the human population often causes the
 overexploitation of resources and disruption of ecological interactions.
 Here we propose that the antagonist effect of humans on exploited species
 might be alleviated with the advent of a second predator species. We
 focused on the complex interactions between an endangered conifer
 (Araucaria araucana) and two seed exploiters: the Austral parakeet
 (Enicognathus ferrugineus) and human seed collectors. We tested the
 importance of partial seed consumption by parakeets as an escape to human
 seed harvesting. Although parakeets frequently ate whole seeds, a
 substantial proportion of the seeds found under trees were only partially
 eaten and avoided by human collectors. These seeds germinated at a similar
 proportion but faster than intact seeds under laboratory conditions. Our
 results revealed an overlooked mutualism between parakeets and an
 endangered tree. Incomplete seed eating by parakeets, plus selection
 against these eaten seeds by humans may enhance regeneration possibilities
 for this conifer species subject to human seed collection, turning the
 scale of the antagonism-mutualism continuum to the mutualistic side. In
 this context, parakeets might be providing an important service in those
 forests subject to human harvesting by allowing a fraction of seeds to
 escape human predation.
description: DataVariables used during
 the analyses of the importance of partial seed consumption as a rescue for
 the Araucaria population subject to human seed collection. More
 information in the data sheet
DOI: 10.15468/dl.dvggnv
title: Occurrence Download

description: A dataset containing 1264966622 species occurrences available in GBIF matching the query:
{
 "Continent" : [
 "is Europe"
 ]
}

 The dataset includes 1264966622 records from 38508 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001341-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17611/dp/20637197
title: Global ShakeMovie synthetic for November 09, 2022 MW 5.7 CENTRAL ITALY
DOI: 10.17611/dp/20637201
title: Global ShakeMovie synthetic for November 09, 2022 MW 6.6 SOUTH OF FIJI ISLANDS
DOI: 10.17611/dp/20641690
title: Global ShakeMovie synthetic for November 09, 2022 MW 6.8 SOUTH OF FIJI ISLANDS
DOI: 10.17611/dp/20641694
title: Global ShakeMovie synthetic for November 09, 2022 MW 7.0 SOUTH OF FIJI ISLANDS
DOI: 10.17611/dp/20641698
title: Global ShakeMovie synthetic for November 10, 2022 MW 5.5 EASTERN XIZANG-INDIA BORDER REG.
DOI: 10.17611/dp/20659434
title: Global ShakeMovie synthetic for November 11, 2022 MW 7.3 TONGA ISLANDS REGION
DOI: 10.17611/dp/20659438
title: Global ShakeMovie synthetic for November 12, 2022 MW 5.8 GUATEMALA
DOI: 10.17611/dp/20659442
title: Global ShakeMovie synthetic for November 12, 2022 MW 7.0 FIJI ISLANDS REGION
DOI: 10.17611/dp/20659446
title: Global ShakeMovie synthetic for November 13, 2022 MW 6.2 NEAR COAST OF CENTRAL CHILE
DOI: 10.17611/dp/20659450
title: Global ShakeMovie synthetic for November 13, 2022 MW 6.3 NEAR COAST OF CENTRAL CHILE
DOI: 10.17611/dp/20659454
title: Global ShakeMovie synthetic for November 14, 2022 MW 6.0 SOUTH OF FIJI ISLANDS
DOI: 10.17611/dp/20659458
title: Global ShakeMovie synthetic for November 14, 2022 MW 6.1 NEAR S. COAST OF HONSHU, JAPAN
DOI: 10.17611/dp/20659462
title: Global ShakeMovie synthetic for November 14, 2022 MW 5.6 PACIFIC-ANTARCTIC RIDGE
DOI: 10.15468/dl.493gp6
title: Occurrence Download

description: A dataset containing 403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Thaumatotibia leucotreta"
 ]
}

 The dataset includes 403 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027468-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17611/dp/20671041
title: Global ShakeMovie synthetic for November 16, 2022 MW 5.5 SOUTHWEST OF SUMATRA, INDONESIA
DOI: 10.17611/dp/20671045
title: Global ShakeMovie synthetic for November 16, 2022 MW 5.3 WESTERN TEXAS
DOI: 10.17611/dp/20671049
title: Global ShakeMovie synthetic for November 16, 2022 MW 5.9 SANTA CRUZ ISLANDS
DOI: 10.17611/dp/20692325
title: Global ShakeMovie synthetic for November 17, 2022 MW 5.6 SOUTHEAST OF LOYALTY ISLANDS
DOI: 10.17611/dp/20692329
title: Global ShakeMovie synthetic for November 18, 2022 MW 6.9 SOUTHWEST OF SUMATRA, INDONESIA
DOI: 10.17611/dp/20692333
title: Global ShakeMovie synthetic for November 19, 2022 MW 5.5 SOUTHWEST OF AFRICA
DOI: 10.17611/dp/20692337
title: Global ShakeMovie synthetic for November 20, 2022 MW 5.4 CRETE, GREECE
DOI: 10.17611/dp/20692341
title: Global ShakeMovie synthetic for November 21, 2022 MW 5.6 JAVA, INDONESIA