cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3886555_d6.v1
title: MOESM3 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 3. Functional genomics-based annotation support for genes in the plant cell wall degradation network (PCWDN) of N. crassa. The table contains information from following sources: CAZY, BROAD, TransportDB, SignalP, Phobius, WoLF PSORT and ProtComp.
DOI: 10.6084/m9.figshare.c.3886555_d7.v1
title: MOESM4 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 4. Transcriptomics-based annotation support for genes in the plant cell wall degradation network (PCWDN) of N. crassa. The first sheet contains information on the transcriptomics-based annotation support for each gene in the PCWDN. The second sheet contains a table with the list of RNA-seq libraries for N. crassa WT strain grown in different conditions along with their GEO [101] accession numbers and references for the profiling data. The third sheet contains a table with the expression of genes in different conditions, separately, for replicate RNA-seq libraries. The fourth sheet contains a table with the average expression (Mean FPKM) of genes in each condition across replicate RNA-seq libraries. The fifth sheet contains a table with information on differential expression of genes in each condition compared to the No Carbon control. The sixth sheet contains a table with information on differential expression of genes in each condition compared to the sucrose control. The set of differentially expressed genes was computed using the Cuffdiff package [103]. The seventh and eighth sheets contain genes in the up-regulons and down-regulons, respectively, of N. crassa in seven conditions: Avicel, Xylan, Xyloglucan, Mannan, Mixed-Linkage Glucan, Pectin and Starch. NoC no carbon, CB cellobiose, XG xyloglucan, MLG mixed-linkage glucan, OPP orange peel powder.
DOI: 10.6084/m9.figshare.c.3886555_d6
title: MOESM3 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 3. Functional genomics-based annotation support for genes in the plant cell wall degradation network (PCWDN) of N. crassa. The table contains information from following sources: CAZY, BROAD, TransportDB, SignalP, Phobius, WoLF PSORT and ProtComp.
DOI: 10.6084/m9.figshare.c.3886555_d7
title: MOESM4 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 4. Transcriptomics-based annotation support for genes in the plant cell wall degradation network (PCWDN) of N. crassa. The first sheet contains information on the transcriptomics-based annotation support for each gene in the PCWDN. The second sheet contains a table with the list of RNA-seq libraries for N. crassa WT strain grown in different conditions along with their GEO [101] accession numbers and references for the profiling data. The third sheet contains a table with the expression of genes in different conditions, separately, for replicate RNA-seq libraries. The fourth sheet contains a table with the average expression (Mean FPKM) of genes in each condition across replicate RNA-seq libraries. The fifth sheet contains a table with information on differential expression of genes in each condition compared to the No Carbon control. The sixth sheet contains a table with information on differential expression of genes in each condition compared to the sucrose control. The set of differentially expressed genes was computed using the Cuffdiff package [103]. The seventh and eighth sheets contain genes in the up-regulons and down-regulons, respectively, of N. crassa in seven conditions: Avicel, Xylan, Xyloglucan, Mannan, Mixed-Linkage Glucan, Pectin and Starch. NoC no carbon, CB cellobiose, XG xyloglucan, MLG mixed-linkage glucan, OPP orange peel powder.
DOI: 10.6084/m9.figshare.c.3886555_d8.v1
title: MOESM5 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 5. Proteomics-based annotation support for genes in the plant cell wall degradation network (PCWDN) of N. crassa. The first sheet contains information on the proteomics-based annotation support for each gene in the PCWDN. The second sheet contains the compiled dataset of secretome for N. crassa strains obtained under different conditions from published literature. The third sheet contains the list of references used to compile this dataset.
DOI: 10.6084/m9.figshare.c.3886555_d8
title: MOESM5 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 5. Proteomics-based annotation support for genes in the plant cell wall degradation network (PCWDN) of N. crassa. The first sheet contains information on the proteomics-based annotation support for each gene in the PCWDN. The second sheet contains the compiled dataset of secretome for N. crassa strains obtained under different conditions from published literature. The third sheet contains the list of references used to compile this dataset.
DOI: 10.6084/m9.figshare.c.3886555_d9
title: MOESM6 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 6. Compiled dataset of experimentally validated deletion strains with growth-deficient phenotypes compared to WT for genes in the plant cell wall degradation network (PCWDN) of N. crassa.
DOI: 10.6084/m9.figshare.c.3886555_d9.v1
title: MOESM6 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 6. Compiled dataset of experimentally validated deletion strains with growth-deficient phenotypes compared to WT for genes in the plant cell wall degradation network (PCWDN) of N. crassa.
DOI: 10.6084/m9.figshare.c.3886555_d10.v1
title: MOESM7 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 7. Biochemical characterization of genes in the plant cell wall degradation network (PCWDN) of N. crassa.
DOI: 10.6084/m9.figshare.c.3886555_d10
title: MOESM7 of Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

description: Additional file 7. Biochemical characterization of genes in the plant cell wall degradation network (PCWDN) of N. crassa.
DOI: 10.15468/dl.umms4b
title: Occurrence Download

description: A dataset containing 405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epinephelus guttatus (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 405 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040322-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3888958_d2
title: Additional file 2: of Prevalence of TECTA mutation in patients with mid-frequency sensorineural hearing loss

description: Primers for TECTA sequencing used in this study. A list of oligonucleotide primers for TECTA sequencing used in this study. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3889438_d2.v1
title: Additional file 11: Table S5. of Temporal dynamics in microbial soil communities at anthrax carcass sites

description: Overview of the Spearman correlation coefficients of all identified KEGG pathways and their FDR corrected p-values. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3889417_d7
title: Additional file 7: of Microbes and associated soluble and volatile chemicals on periodically wet household surfaces

description: Table S1. Modeling results of source-specific contributions of VOCs to indoor concentrations. Raw data for the modeling results are represented in Fig.Â 6 of the main text. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.c.3889447_d1.v1
title: Additional file 1: Table S1. of VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences

description: Complex regions with multiple overlapped INDELs. (TXT 25Â kb)
DOI: 10.6084/m9.figshare.c.3889438_d2
title: Additional file 11: Table S5. of Temporal dynamics in microbial soil communities at anthrax carcass sites

description: Overview of the Spearman correlation coefficients of all identified KEGG pathways and their FDR corrected p-values. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3889438_d3.v1
title: Additional file 12: Table S6. of Temporal dynamics in microbial soil communities at anthrax carcass sites

description: KEGG KO-term abundances for significantly correlating KEGG pathways. Abundances are normalized using DESEQ2 and sorted on carcass 1, time point TÂ =Â 0. (XLSX 368Â kb)
DOI: 10.6084/m9.figshare.c.3889447_d1
title: Additional file 1: Table S1. of VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences

description: Complex regions with multiple overlapped INDELs. (TXT 25Â kb)
DOI: 10.6084/m9.figshare.c.3889438_d3
title: Additional file 12: Table S6. of Temporal dynamics in microbial soil communities at anthrax carcass sites

description: KEGG KO-term abundances for significantly correlating KEGG pathways. Abundances are normalized using DESEQ2 and sorted on carcass 1, time point TÂ =Â 0. (XLSX 368Â kb)
DOI: 10.6084/m9.figshare.c.3889453_d1.v1
title: Additional file 1: Table S1. of Îł-Carboxymuconolactone decarboxylase: a novel cell cycle-related basal body protein in the early branching eukaryote Trichomonas vaginalis

description: The dualCMD protein sequences analyzed in this study. (XLSX 187 kb)
DOI: 10.21223/ia5nr7/8ziiaf
title: 04_Field sketch of a plot.tab

description: :unav
DOI: 10.21223/ia5nr7/lzviaf
title: 03_Field_management.xlsx

description: :unav
DOI: 10.21223/ia5nr7/mw8sxd
title: 01_data_Cochacochayocc.tab

description: :unav
DOI: 10.21223/ia5nr7/sgpiy1
title: 02_Data_dictionary.tab

description: :unav
DOI: 10.6084/m9.figshare.c.3891235_d5
title: Additional file 5: of Transcriptome analysis reveals differences in mechanisms regulating cessation of luteal function in pregnant and non-pregnant dogs

description: Shown are the following lists: (1) representative genes involved in particular GO terms; (2) representative genes involved in particular networks; (3) representative pathways, genes and top upstream regulators. (XLSX 21Â kb)
DOI: 10.15468/dl.hntyhq
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epinephelus itajara (Lichtenstein, 1822)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 114 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040323-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3893530_d9.v1
title: Additional file 9: of Fangorn Forest (F2): a machine learning approach to classify genes and genera in the family Geminiviridae

description: This file presents the pipeline evaluation with geminiviruses sequences, plant viruses, circoviruses and fake sequences. (XLS 44 kb)
DOI: 10.6084/m9.figshare.c.3893530_d9
title: Additional file 9: of Fangorn Forest (F2): a machine learning approach to classify genes and genera in the family Geminiviridae

description: This file presents the pipeline evaluation with geminiviruses sequences, plant viruses, circoviruses and fake sequences. (XLS 44 kb)
DOI: 10.6084/m9.figshare.c.3894703_d2.v1
title: Additional file 2: Tables S5 of Avocado fruit maturation and ripening: dynamics of aliphatic acetogenins and lipidomic profiles from mesocarp, idioblasts and seed

description: to S7. Manually curated features corresponding to abundant TAGs, DAGs and MAGs from ripening avocado mesocarp (Additional file 2: Table S5), idioblasts (Additional file 2: Table S6), and seeds (Additional file 2: Table S7); the latter also includes features with acetogenin signatures, along with their tentative assignations. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3894703_d2
title: Additional file 2: Tables S5 of Avocado fruit maturation and ripening: dynamics of aliphatic acetogenins and lipidomic profiles from mesocarp, idioblasts and seed

description: to S7. Manually curated features corresponding to abundant TAGs, DAGs and MAGs from ripening avocado mesocarp (Additional file 2: Table S5), idioblasts (Additional file 2: Table S6), and seeds (Additional file 2: Table S7); the latter also includes features with acetogenin signatures, along with their tentative assignations. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3894796_d6.v1
title: Additional file 3: Table S2. of Viral metagenomics of aphids present in bean and maize plots on mixed-use farms in Kenya reveals the presence of three dicistroviruses including a novel Big Sioux River virus-like dicistrovirus

description: List of primers used for RT-PCR and sequences generated. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3894850_d2.v1
title: Additional file 2: of The quality of medical death certification of cause of death in hospitals in rural Bangladesh: impact of introducing the International Form of Medical Certificate of Cause of Death

description: Changes in death certificate by age group, place of death, and sex. One table proving the percentage of death certificates that required a change in the UCOD due to a change in diagnosis or change in sequence by age group, place of death, and sex. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3894850_d2
title: Additional file 2: of The quality of medical death certification of cause of death in hospitals in rural Bangladesh: impact of introducing the International Form of Medical Certificate of Cause of Death

description: Changes in death certificate by age group, place of death, and sex. One table proving the percentage of death certificates that required a change in the UCOD due to a change in diagnosis or change in sequence by age group, place of death, and sex. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3894796_d6
title: Additional file 3: Table S2. of Viral metagenomics of aphids present in bean and maize plots on mixed-use farms in Kenya reveals the presence of three dicistroviruses including a novel Big Sioux River virus-like dicistrovirus

description: List of primers used for RT-PCR and sequences generated. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3894796_d7.v1
title: Additional file 4: Text file S2. of Viral metagenomics of aphids present in bean and maize plots on mixed-use farms in Kenya reveals the presence of three dicistroviruses including a novel Big Sioux River virus-like dicistrovirus

description: CO1 sequences from Sanger sequencing. (TXT 24 kb)
DOI: 10.6084/m9.figshare.c.3894796_d7
title: Additional file 4: Text file S2. of Viral metagenomics of aphids present in bean and maize plots on mixed-use farms in Kenya reveals the presence of three dicistroviruses including a novel Big Sioux River virus-like dicistrovirus

description: CO1 sequences from Sanger sequencing. (TXT 24 kb)
DOI: 10.6084/m9.figshare.c.3894796_d8.v1
title: Additional file 5: Text file S3. of Viral metagenomics of aphids present in bean and maize plots on mixed-use farms in Kenya reveals the presence of three dicistroviruses including a novel Big Sioux River virus-like dicistrovirus

description: CO1 sequences from Virfind. (TXT 43 kb)
DOI: 10.6084/m9.figshare.c.3894796_d8
title: Additional file 5: Text file S3. of Viral metagenomics of aphids present in bean and maize plots on mixed-use farms in Kenya reveals the presence of three dicistroviruses including a novel Big Sioux River virus-like dicistrovirus

description: CO1 sequences from Virfind. (TXT 43 kb)
DOI: 10.15468/dl.ujmnq2
title: Occurrence Download

description: A dataset containing 275 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Diaemus youngii (Jentink, 1893)"
 ]
}

 The dataset includes 275 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040324-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3897007_d3.v1
title: Additional file 3: of Pre- to postoperative coagulation profile of 307 patients undergoing oesophageal resection with epidural blockade over a 10-year period in a single hospital: implications for the risk of spinal haematoma

description: Raw data presented as a tabulated text file (.txt). Patientsâ   ages and the dates of operation have been removed to preserve anonymity. (TXT 91Â kb)
DOI: 10.15468/dl.avbd4g
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eptatretus deani (Evermann & Goldsborough, 1907)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040325-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3898231_d1.v1
title: Additional file 1: of Utilization of dual contraception method among reproductive age women on antiretroviral therapy in selected public hospitals of Northern Ethiopia

description: Dataset supporting data. (SAV 26 kb)
DOI: 10.6084/m9.figshare.c.3898231_d1
title: Additional file 1: of Utilization of dual contraception method among reproductive age women on antiretroviral therapy in selected public hospitals of Northern Ethiopia

description: Dataset supporting data. (SAV 26 kb)
DOI: 10.6084/m9.figshare.c.3898996_d13.v1
title: Additional file 6: Table S3. of RNA sequencing identifies novel non-coding RNA and exon-specific effects associated with cigarette smoking

description: Significant gene ontology terms over-represented in genes differentially expressed between current and former smokers. P-values are Bonferroni corrected for multiple comparisons. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3898996_d14.v1
title: Additional file 7: Table S4. of RNA sequencing identifies novel non-coding RNA and exon-specific effects associated with cigarette smoking

description: Differentially expressed genes in current versus former smokers (adjusted p-value &lt;0.05) that are nominally significant (p
DOI: 10.6084/m9.figshare.c.3898996_d13
title: Additional file 6: Table S3. of RNA sequencing identifies novel non-coding RNA and exon-specific effects associated with cigarette smoking

description: Significant gene ontology terms over-represented in genes differentially expressed between current and former smokers. P-values are Bonferroni corrected for multiple comparisons. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3898996_d14
title: Additional file 7: Table S4. of RNA sequencing identifies novel non-coding RNA and exon-specific effects associated with cigarette smoking

description: Differentially expressed genes in current versus former smokers (adjusted p-value &lt;0.05) that are nominally significant (p
DOI: 10.6084/m9.figshare.c.3899068_d2.v1
title: Additional file 2: of Crossing enhanced and high fidelity SpCas9 nucleases to optimize specificity and cleavage

description: Primer, sequence, and deep sequencing data. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3901399_d1.v1
title: MOESM1 of An improved microscale method for extraction of phenolic acids from maize

description: Additional file 1. Determination of proximal analysis for maize varieties. *Results are expressed as the average of three replicates ± standard deviation.
DOI: 10.6084/m9.figshare.c.3901375_d5.v1
title: Additional file 14: Table S11. of The nuclear receptor ERÎ˛ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading

description: ERÎ˛-bound mRNAs. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3901375_d5
title: Additional file 14: Table S11. of The nuclear receptor ERÎ˛ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading

description: ERÎ˛-bound mRNAs. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3901399_d1
title: MOESM1 of An improved microscale method for extraction of phenolic acids from maize

description: Additional file 1. Determination of proximal analysis for maize varieties. *Results are expressed as the average of three replicates ± standard deviation.
DOI: 10.6084/m9.figshare.c.3901399_d2.v1
title: MOESM2 of An improved microscale method for extraction of phenolic acids from maize

description: Additional file 2. Comparison of total phenolic acids determination by conventional and improved methods. *Results are expressed as the average of three replicates as mg of gallic acid equivalent per 100 g dry weight (mg GAE/100 g dw). Min: minimum value of the data, Max: maximum value of the data. LSD: Least significant difference (α = 0.05).
DOI: 10.15468/dl.7avj9g
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eptatretus stoutii (Lockington, 1878)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 54 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040326-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3901399_d2
title: MOESM2 of An improved microscale method for extraction of phenolic acids from maize

description: Additional file 2. Comparison of total phenolic acids determination by conventional and improved methods. *Results are expressed as the average of three replicates as mg of gallic acid equivalent per 100 g dry weight (mg GAE/100 g dw). Min: minimum value of the data, Max: maximum value of the data. LSD: Least significant difference (α = 0.05).
DOI: 10.6084/m9.figshare.c.3901375_d6.v1
title: Additional file 15: Table S12. of The nuclear receptor ERÎ˛ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading

description: ERÎ˛-bound miRNAs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3901399_d3.v1
title: MOESM3 of An improved microscale method for extraction of phenolic acids from maize

description: Additional file 3. Comparison of free phenolic acids determination by conventional and improved methods. *Results are expressed as the average of three replicates as µg per g dry weight (µg/g dw). Min: minimum value of the data, Max: maximum value of the data. LSD: Least significant difference (α = 0.05).
DOI: 10.6084/m9.figshare.c.3901432_d3.v1
title: Additional file 2: Table S2. of Lifestyle, gene gain and loss, and transcriptional remodeling cause divergence in the transcriptomes of Phytophthora infestans and Pythium ultimum during potato tuber colonization

description: CPM values of all genes. Table S5. Pseudogene candidates from Ph. infestans and Py. ultimum. Table S6. Species-specific genes from Ph. infestans and Py. ultimum. Table S7. Revised annotations of Ph. infestans genes. Table S8. Revised annotations of Py. ultimum genes. Table S9. Primers used for RT-qPCR. (XLSX 4887Â kb)