cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/pcra-c14-69038
title: Redemption tidings, vol. 49, nos. 1-52, 4 Jan. - 27 Dec. 1973

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.z8tmh8
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aspidoscelis franciscensis (Van Denburgh & Slevin, 1921))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 50 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043505-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pme87j
title: Occurrence Download

description: A dataset containing 568917 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ischnura elegans (Vander Linden, 1820)"
 ]
}

 The dataset includes 568917 records from 1628 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075592-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bj2drv
title: Occurrence Download

description: A dataset containing 18118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus contorta Douglas ex Loudon"
 ]
}

 The dataset includes 18118 records from 238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161096-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4t3g63
title: Occurrence Download

description: A dataset containing 354 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chascanum hederaceum (Sond.) Moldenke"
 ]
}

 The dataset includes 354 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083801-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lawfei
title: Occurrence Download

description: A dataset containing 574 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Scirpus pendulus Muhl."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 574 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019758-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g63c9x
title: Occurrence Download

description: A dataset containing 884 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parachromis managuensis (Günther, 1867)"
 ]
}

 The dataset includes 884 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173992-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3aua6k
title: Occurrence Download

description: A dataset containing 2332 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia davidii Subils"
 ]
}

 The dataset includes 2332 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083805-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hmgro
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Armeria colorata Pau"
 ]
}

 The dataset includes 88 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019758-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5063/f1kp80mq
title: A photographic guide to spring phenology in woody plants of Western North America

description: Studies of spring budburst frequently rely on observations from branch cuttings kept under controlled environmental conditions to test for species-level variation. While this approach provides a more mechanistic understanding of how budburst in adult trees responds to differ- ent environmental cues, it is critical that observations are standardized across species and studies. Standardized guides, such as the BBCH (Biologische Bundesanstalt, Bundessortenamt, CHemische Industrie) scale, were developed to provide a consistent definition of each phenological stage of spring budburst. But given the diversity in species bud morphology, architecture, and observers’ interpretations, making consistent observations across growth stages is still challenging. To address these challenges, we developed a photoguide of the principal growth stages of budburst and leafout for our focal community, photographing BBCH stages 0 to 17 for woody plant species in western North American temperate forests.
DOI: 10.15468/dl.sa73f5
title: Occurrence Download

description: A dataset containing 561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pluchea odorata (L.) Cass.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 561 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173986-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hwvou8
title: Occurrence Download

description: A dataset containing 3236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84"
 ]
 },
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "TaxonKey is Acer saccharum Marshall",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3236 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019759-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ub9n3h
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Limaformosa vernayi (Bogert, 1940)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083819-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8z57d
title: Occurrence Download

description: A dataset containing 104400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rotala serpyllifolia (Roth) Bremek., Rotala simpliciuscula (S.Kurz) Koehne, Rotala smithii A.Fern. & Diniz, Rotala stagnina Hiern, Rotala subrotunda (Wall. ex Kurz) Koehne, Rotala tenella (Guill. & Perr.) Hiern, Rotala thymoides Exell, Rotala tulunadensis K.S.Prasad, P.Biju, Raveendran & K.G.Bhat, Rotala verdcourtii A.Fern., Rotala verticillaris L., Rotala wallichii (Hook.fil.) Koehne, Rotala welwitschii Exell, Rumex aquaticus L., Rumex bidens R.Br., Rumex britannica L., Rumex gmelinii Turcz., Rumex hydrolapathum (Scop.) Huds., Ruppia cirrhosa (Petagna) Grande, Ruppia didyma Sw. ex Wikstr., Ruppia drepanensis Tineo, Ruppia filifolia (Phil.) Skottsb., Ruppia maritima L., Ruppia megacarpa R.Mason, Ruppia polycarpa R.Mason)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation, Literature Occurrence, Material sample, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 104400 records from 493 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0191507-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hyrxwb
title: Occurrence Download

description: A dataset listing the 5795494 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 5795494 records were derived from 1466 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019759-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14473/csda/ufw9va/vyuaw2
title: 0091.tab

description: Data
DOI: 10.5281/zenodo.7647845
title: Image dataset from multiplex IHC stained TMA sections

description: IHC Cohort: Multiplex IHC stained histological slides were collected from Liaoning Cancer Hospital and Institute in China. The raw data collected are TMA sections, all of which are obtained from NSCLC patients. Non-overlapping image patches (256*256 pixels) are extracted from TMA sections and manually annotated by our collaborated pathologists via the Qupath software. Initially, seven TMA sections with multiplex stains including CD3, CD20, CD38, CDK4, Cyclin-D1, Ki67, and P53 were used. Except for CD3 stained TMA sections, we randomly cropped 25 image patches from each of these TMA sections, of which 17, 3 and 5 patches are correspondingly used for training, validation, and testing. Note that 18, 3 and 5 CD3 image patches are cropped for building dataset. To suppress over-fitting and enhance generalization of the SRSA-Net, we additionally included 81 annotated image patches from other five TMA sections with stains of CD34, CD68, D2-40, FAP, and SMA into training and validation set. In total, the IHC cohort includes 9,725 manually identified cell nuclei. The numbers of training, validation and testing image patches are 195, 36, and 35, respectively.

For the masks, the first channel and the second channel denotes the negative and positive nuclei pixels, respectively. Note that each pixel is labelled from 0 to n, where n is the number of individual nuclei detected. 0 pixels indicate background. Pixel values i indicate that the pixel belongs to the ith nucleus.  The last channel marks the information of all the nuclei pixels, where nuclei pixel are left as 0, otherwise 1.

fold1: training set

fold2: validation set

fold3: testing set

 

if you use this dataset, please cite:

@article{wang2024simultaneously,
  title={Simultaneously segmenting and classifying cell nuclei by using multi-task learning in multiplex immunohistochemical tissue microarray sections},
  author={Wang, Ranran and Qiu, Yusong and Hao, Xinyu and Jin, Shan and Gao, Junxiu and Qi, Heng and Xu, Qi and Zhang, Yong and Xu, Hongming},
  journal={Biomedical Signal Processing and Control},
  volume={93},
  pages={106143},
  year={2024},
  publisher={Elsevier}
}
DOI: 10.5281/zenodo.7647846
title: Image dataset from multiplex IHC stained TMA sections

description: IHC Cohort: Multiplex IHC stained histological slides were collected from Liaoning Cancer Hospital and Institute in China. The raw data collected are TMA sections, all of which are obtained from NSCLC patients. Non-overlapping image patches (256*256 pixels) are extracted from TMA sections and manually annotated by our collaborated pathologists via the Qupath software. Initially, seven TMA sections with multiplex stains including CD3, CD20, CD38, CDK4, Cyclin-D1, Ki67, and P53 were used. Except for CD3 stained TMA sections, we randomly cropped 25 image patches from each of these TMA sections, of which 17, 3 and 5 patches are correspondingly used for training, validation, and testing. Note that 18, 3 and 5 CD3 image patches are cropped for building dataset. To suppress over-fitting and enhance generalization of the SRSA-Net, we additionally included 81 annotated image patches from other five TMA sections with stains of CD34, CD68, D2-40, FAP, and SMA into training and validation set. In total, the IHC cohort includes 9,725 manually identified cell nuclei. The numbers of training, validation and testing image patches are 195, 36, and 35, respectively.

For the masks, the first channel and the second channel denotes the negative and positive nuclei pixels, respectively. Note that each pixel is labelled from 0 to n, where n is the number of individual nuclei detected. 0 pixels indicate background. Pixel values i indicate that the pixel belongs to the ith nucleus.  The last channel marks the information of all the nuclei pixels, where nuclei pixel are left as 0, otherwise 1.

fold1: training set

fold2: validation set

fold3: testing set

 

if you use this dataset, please cite:

@article{wang2024simultaneously,
  title={Simultaneously segmenting and classifying cell nuclei by using multi-task learning in multiplex immunohistochemical tissue microarray sections},
  author={Wang, Ranran and Qiu, Yusong and Hao, Xinyu and Jin, Shan and Gao, Junxiu and Qi, Heng and Xu, Qi and Zhang, Yong and Xu, Hongming},
  journal={Biomedical Signal Processing and Control},
  volume={93},
  pages={106143},
  year={2024},
  publisher={Elsevier}
}
DOI: 10.5281/zenodo.11208237
title: DERIVATION IN DER DEUTSCHEN GEGENWARTSSPRACHE
DOI: 10.5281/zenodo.11208238
title: DERIVATION IN DER DEUTSCHEN GEGENWARTSSPRACHE
DOI: 10.15468/dl.gqvq92
title: Occurrence Download

description: A dataset containing 194997 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, United Kingdom of Great Britain and Northern Ireland, Portugal, Spain, France, Germany, Belgium, Netherlands, Italy, Greece, Denmark, Norway, Sweden, Finland, Svalbard and Jan Mayen, Estonia, Latvia, Lithuania, Türkiye, Russian Federation, Belarus, Ukraine, Moldova, Republic of, Switzerland, Austria, Poland, Czechia, Hungary, Slovakia, Romania, Bulgaria, Kazakhstan, Armenia, North Macedonia, Albania, Serbia, Montenegro, Kosovo, Bosnia and Herzegovina, Croatia, Slovenia, Cyprus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Salix repens L."
 ]
}

 The dataset includes 194997 records from 634 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021466-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25402/fsg.23177885.v1
title: supplementary materials: Alectinib for treating patients with metastatic ALK-positive NSCLC: systematic review and network metanalysis.docx

description:  supplementary materials: Alectinib for treating patients with metastatic ALK-positive NSCLC: systematic review and network metanalysis
DOI: 10.5281/zenodo.10077539
title: Data and Code for "Engineering Majorana bound states in coupled quantum dots in a two-dimensional electron gas"

description: This folder contains the raw data and code used to generate the plots for the paper Engineering Majorana bound states in coupled quantum dots in a two-dimensional electron gas.
To run the Jupyter notebooks, install Anaconda and execute:

conda env create -f environment.yml 
followed by:

conda activate 2DEG_Kitaev
Finally,

jupyter notebook
to launch the notebooks
Data is stored in the qcodes '.db' format. Datasets are transformed in the plotting functions to the xarray dataformat, before being processed.
DOI: 10.5281/zenodo.10077538
title: Data and Code for "A two-site Kitaev chain in a two-dimensional electron gas"

description: This folder contains the raw data and code used to generate the plots for the paper Engineering Majorana bound states in coupled quantum dots in a two-dimensional electron gas.

The manuscript can be found on Arxiv.

To run the Jupyter notebooks, install Anaconda and execute:



conda env create -f environment.yml 


followed by:



conda activate 2DEG_Kitaev


Finally,



jupyter notebook


to launch the notebooks

Data is stored in the qcodes '.db' format. Datasets are transformed in the plotting functions to the xarray dataformat, before being processed.
description: v2 - version after peer review
DOI: 10.5281/zenodo.10801215
title: Data and Code for "A two-site Kitaev chain in a two-dimensional electron gas"

description: This folder contains the raw data and code used to generate the plots for the paper Engineering Majorana bound states in coupled quantum dots in a two-dimensional electron gas.

The manuscript can be found on Arxiv.

To run the Jupyter notebooks, install Anaconda and execute:



conda env create -f environment.yml 


followed by:



conda activate 2DEG_Kitaev


Finally,



jupyter notebook


to launch the notebooks

Data is stored in the qcodes '.db' format. Datasets are transformed in the plotting functions to the xarray dataformat, before being processed.
description: v2 - version after peer review
DOI: 10.60893/figshare.sdy.25772655.v1
title: Supplementary Online Material

description: Dataset accompanying the algorithm used for testing and might be useful to community.
DOI: 10.14473/csda/pxphmj
title: Bytová situace novomanželů - Česká republika 1997

description: Reprezentativní dotazníkové šetření mladých snoubenců. Dotazník byl zaměřen na zjištění základních faktů o jejich bytové situaci před i po svatbě a o plánech do budoucna. V rámci projektu Trh bydlení, jeho regionální diferenciace a sociální souvislosti byla provedena další dvě šetření: Regionální rozdíly v cenách na trhu s bydlením (1996-1997) - Šetření zaměřené na získání údajů o tržním nájemném, cenách bytů všech kategorií vlastnictví a cenách rodinných domů v regionech České republiky. Zdrojem informací byly inzeráty v inzertních periodikách a údaje zveřejňované realitními kancelářemi. Lidé na trhu bydlení (1996-1997) - Současně s výzkumem cen na trhu bydlení byla provedena telefonní anketa s lidmi, kteří v inzerátu uvedli telefonní číslo.
DOI: 10.14473/csda/pxphmj/aormcu
title: TI_CSDA00082.pdf

description: Technická informace
DOI: 10.5281/zenodo.11208322
title: Electric car subsidies in social media and parliament 2022–2023: analysis results

description: Electric car subsidies in social media and the Finnish parliament 2022–2023: comparative analysis results obtained using three methods for qualitative classification of textual data.
DOI: 10.5281/zenodo.11208323
title: Electric car subsidies in social media and parliament 2022–2023: analysis results

description: Electric car subsidies in social media and the Finnish parliament 2022–2023: comparative analysis results obtained using three methods for qualitative classification of textual data.
DOI: 10.5281/zenodo.11199319
title: Serial block-face scanning electron microscopy of adherent cells on thin plastic substrate – Data set 06

description: Serial block-face (SBF) scanning electron microscopy (SEM) is used for imaging the entire internal ultrastructure of cells, tissue samples or small organisms. We developed a workflow for SBF SEM of adherent cells, such as Giardia parasites and HeLa cells, attached to the surface of a plastic culture dish, which preserves the interface between cells and plastic substrate. Cells were embedded in situ on their substrate using silicone microwells and were mounted for cross-sectioning which allowed SBF imaging of large volumes and many cells. In total we provide 10 data sets with image series from SBF SEM of Giardia and HeLa cells prepared with protocol variants to improve the workflow. A detailed description of the methods and the data set is provided in the download container.

Data set 06 comprises an image series of 215 images recorded of a HeLa cell adhered to the plastic substrate of a culture dish. SBF SEM was done at a section interval of 10 nm using the DBS detector of the SEM at low vacuum (0.4 mbar). Original pixel size was 10 nm. The data folder contains the raw image files, processed image files (see data set description for details of the processing), a video file of a processed image file series.
DOI: 10.5281/zenodo.11199320
title: Serial block-face scanning electron microscopy of adherent cells on thin plastic substrate – Data set 06

description: Serial block-face (SBF) scanning electron microscopy (SEM) is used for imaging the entire internal ultrastructure of cells, tissue samples or small organisms. We developed a workflow for SBF SEM of adherent cells, such as Giardia parasites and HeLa cells, attached to the surface of a plastic culture dish, which preserves the interface between cells and plastic substrate. Cells were embedded in situ on their substrate using silicone microwells and were mounted for cross-sectioning which allowed SBF imaging of large volumes and many cells. In total we provide 10 data sets with image series from SBF SEM of Giardia and HeLa cells prepared with protocol variants to improve the workflow. A detailed description of the methods and the data set is provided in the download container.

Data set 06 comprises an image series of 215 images recorded of a HeLa cell adhered to the plastic substrate of a culture dish. SBF SEM was done at a section interval of 10 nm using the DBS detector of the SEM at low vacuum (0.4 mbar). Original pixel size was 10 nm. The data folder contains the raw image files, processed image files (see data set description for details of the processing), a video file of a processed image file series.
DOI: 10.15468/dl.cy9x5q
title: Occurrence Download

description: A dataset containing 424 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Choeroniscus godmani (Thomas, 1903)"
 ]
}

 The dataset includes 424 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021475-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.