cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6600728
title: Partially-Saturated Brines Within Basal Ice or Sediments can Explain the Bright Basal Reflections in the South Polar Layered Deposits

description: Electrical property data
DOI: 10.6084/m9.figshare.24076064
title: Labor market affiliation of patients with myeloproliferative neoplasms: a population-based matched cohort study

description: Patients with myeloproliferative neoplasms (MPNs) suffer from substantial symptoms and risk of debilitating complications, yet observational data on their labor market affiliation are scarce. We conducted a descriptive cohort study using data from Danish nationwide registries, including patients diagnosed with MPN in 2010-2016. Each patient was matched with up to ten comparators without MPN on age, sex, level of education, and region of residence. We assessed pre- and post-diagnosis labor market affiliation, defined as working, unemployed, or receiving sickness benefit, disability pension, retirement pension, or other health-related benefits. Labor market affiliation was assessed weekly from two years pre-diagnosis until death, emigration, or 31 December 2018. For patients and comparators, we reported percentage point (pp) changes in labor market affiliation cross-sectionally from week −104 pre-diagnosis to week 104 post-diagnosis. The study included 3,342 patients with MPN and 32,737 comparators. From two years pre-diagnosis until two years post-diagnosis, a larger reduction in the proportion working was observed among patients than comparators (essential thrombocythemia: 10.2 [95% CI: 6.3–14.1] vs. 6.8 [95% CI: 5.5–8.0] pp; polycythemia vera: 9.6 [95% CI: 5.9–13.2] vs. 7.4 [95% CI: 6.2–8.7] pp; myelofibrosis: 8.1 [95% CI: 3.0–13.2] vs. 5.8 [95% CI: 4.2–7.5] pp; and unclassifiable MPN: 8.0 [95% CI: 3.0–13.0] vs. 7.4 [95% CI: 5.7–9.1] pp). Correspondingly, an increase in the proportion of patients receiving sickness benefits including other health-related benefits was evident around the time of diagnosis. Overall, we found that Danish patients with essential thrombocythemia, polycythemia vera, myelofibrosis, and unclassifiable MPN had slightly impaired labor market affiliation compared with a population of the same age and sex. From two years pre-diagnosis to two years post-diagnosis, we observed a larger reduction in the proportion of patients with MPN working and a greater proportion receiving sickness benefits compared with matched individuals.
DOI: 10.6084/m9.figshare.24076064.v1
title: Labor market affiliation of patients with myeloproliferative neoplasms: a population-based matched cohort study

description: Patients with myeloproliferative neoplasms (MPNs) suffer from substantial symptoms and risk of debilitating complications, yet observational data on their labor market affiliation are scarce. We conducted a descriptive cohort study using data from Danish nationwide registries, including patients diagnosed with MPN in 2010-2016. Each patient was matched with up to ten comparators without MPN on age, sex, level of education, and region of residence. We assessed pre- and post-diagnosis labor market affiliation, defined as working, unemployed, or receiving sickness benefit, disability pension, retirement pension, or other health-related benefits. Labor market affiliation was assessed weekly from two years pre-diagnosis until death, emigration, or 31 December 2018. For patients and comparators, we reported percentage point (pp) changes in labor market affiliation cross-sectionally from week −104 pre-diagnosis to week 104 post-diagnosis. The study included 3,342 patients with MPN and 32,737 comparators. From two years pre-diagnosis until two years post-diagnosis, a larger reduction in the proportion working was observed among patients than comparators (essential thrombocythemia: 10.2 [95% CI: 6.3–14.1] vs. 6.8 [95% CI: 5.5–8.0] pp; polycythemia vera: 9.6 [95% CI: 5.9–13.2] vs. 7.4 [95% CI: 6.2–8.7] pp; myelofibrosis: 8.1 [95% CI: 3.0–13.2] vs. 5.8 [95% CI: 4.2–7.5] pp; and unclassifiable MPN: 8.0 [95% CI: 3.0–13.0] vs. 7.4 [95% CI: 5.7–9.1] pp). Correspondingly, an increase in the proportion of patients receiving sickness benefits including other health-related benefits was evident around the time of diagnosis. Overall, we found that Danish patients with essential thrombocythemia, polycythemia vera, myelofibrosis, and unclassifiable MPN had slightly impaired labor market affiliation compared with a population of the same age and sex. From two years pre-diagnosis to two years post-diagnosis, we observed a larger reduction in the proportion of patients with MPN working and a greater proportion receiving sickness benefits compared with matched individuals.
DOI: 10.6084/m9.figshare.20367882.v1
title: Fish Trade Dataset

description: This dataset relates to the book <em>Ireland’s Sea Fisheries, 1400-1600: Economics, Environment and Ecology</em>, for more information on how it was generated, see Appendix 2 of that volume. The data was collected from a variety of sources to study Ireland’s export of fish in the late medieval and early modern periods. The data is focused on the fifteenth and sixteenth centuries but contains data for the seventeenth century as well. The data presented here was initially part of a relational database constructed in Microsoft Access but has since been extracted and is presented here as a single spreadsheet. For more information on sources and explanations for the column headings, please read the introduction document upload here.
DOI: 10.18112/openneuro.ds004737.v1.0.0
title: CS-DSI
DOI: 10.6084/m9.figshare.20367882.v2
title: Fish Trade Dataset

description: This dataset relates to the book <em>Ireland’s Sea Fisheries, 1400-1600: Economics, Environment and Ecology</em>, for more information on how it was generated, see Appendix 2 of that volume. The data was collected from a variety of sources to study Ireland’s export of fish in the late medieval and early modern periods. The data is focused on the fifteenth and sixteenth centuries but contains data for the seventeenth century as well. The data presented here was initially part of a relational database constructed in Microsoft Access but has since been extracted and is presented here as a single spreadsheet. For more information on sources and explanations for the column headings, please read the introduction document upload here.
DOI: 10.18739/a2vx0647w
title: Cryostratigraphy and ground-ice content of the upper permafrost in Alaska, 2018-2023

description: This dataset contains information on cryostratigraphy and ground-ice content of the upper permafrost, which was based on the results of 2018-2023 field work in various regions of Alaska and Canadian Arctic including the following study areas: Utqiagvik (former Barrow), Teshekpuk Lake, Prudhoe Bay Oilfield, Toolik Lake, Jago River, Itkillik River, Anaktuvuk River, Fairbanks, Dalton Highway, Glennallen, Point Lay, Bylot Island (Canada), Inuvik-Tuktoyaktuk (Canada). Cryostratigraphy of the upper permafrost was studied mainly in coastal and riverbank exposures and frozen cores obtained from drilling with the SIPRE corer. Permafrost exposures and cores were described and photographed in the field, and obtained soil samples were delivered to the University of Alaska Fairbanks for additional descriptions and analyses. Ice contents of frozen soils (including gravimetric and volumetric moisture content, excess-ice content) were measured. The dataset includes cryostratigraphic descriptions, gravimetric (GMC) and volumetric (VMC) moisture content, ice-content values (EIC), electroconductivity (EC) and photographs of the permafrost exposures and frozen cores obtained from boreholes.
DOI: 10.6084/m9.figshare.24076044
title: Kmz file

description: This kmz dataset includes geochronological and dDglass sample locations and results discussed in the main text.
DOI: 10.5281/zenodo.8309886
title: Data base of the complexity Indexes to compute MFA and MCI from the paper "Unleashing The Potential Of Artificial Reefs Design"

description: This data base compiles the Complexity indexes used to compute the MFA and extract the MCI from the paper "Unleashing The Potential Of Artificial Reefs Design: A Purpose-Driven Evaluation Of Structural Complexity" (https://doi.org/10.32942/X2G300)
DOI: 10.5281/zenodo.8309885
title: Data base of the complexity Indexes to compute MFA and MCI from the paper "Unleashing The Potential Of Artificial Reefs Design"

description: This data base compiles the Complexity indexes used to compute the MFA and extract the MCI from the paper "Unleashing The Potential Of Artificial Reefs Design: A Purpose-Driven Evaluation Of Structural Complexity" (https://doi.org/10.32942/X2G300)
DOI: 10.6069/ezsx-xv07
title: Global Burden of Disease Study 2021 (GBD 2021) Sickle Cell Disease Birth Incidence, Prevalence, and Mortality 2000-2021

description: Completed as part of the Global Burden of Diseases, Injuries, and Risk Factors Study (GBD) 2021, this dataset provides a global assessment of sickle cell disease (SCD) birth incidence, prevalence and mortality burden by age and sex for 204 countries and territories from 2000 to 2021. It includes estimates for three distinct genotype-specific SCD models: homozygous SCD and severe sickle cell/beta thalassaemia (SS and Sβ°), sickle cell-hemoglobin C disease (SC), and “mild” sickle cell/beta thalassaemia (Sβ+). The three model estimates were summed into estimates for “total SCD mortality.” The latter can be compared against the estimates provided for the GBD cause "Sickle cell disorders," both of which are also included in the dataset. Refer to the related publication for information on modeling methods and analysis.
DOI: 10.5281/zenodo.8309888
title: Data from questionnaire from village adjacent Ugalla game reserve

description: Data were collected using a semi-structured interview questionnaire, which involved 141 respondents’ members of four trade unions, namely SIFICO, TWIKILAGI, TABORA FISH and TABORA BEEKEEPERS, who were contacted and interviewed. With the application of the Yamen formula, we efficiently identified 141 individuals who were considered appropriate and representative of the population sample size to participate in the interviews.To ensure the questionnaires are trustworthy, we conducted a reliability analysis test. Additionally, we checked the data validity using a Pearson correlation coefficient.
DOI: 10.5281/zenodo.8309887
title: Data from questionnaire from village adjacent Ugalla game reserve

description: Data were collected using a semi-structured interview questionnaire, which involved 141 respondents’ members of four trade unions, namely SIFICO, TWIKILAGI, TABORA FISH and TABORA BEEKEEPERS, who were contacted and interviewed. With the application of the Yamen formula, we efficiently identified 141 individuals who were considered appropriate and representative of the population sample size to participate in the interviews.To ensure the questionnaires are trustworthy, we conducted a reliability analysis test. Additionally, we checked the data validity using a Pearson correlation coefficient.
DOI: 10.21227/dpsa-q406
title: SYPHAXAR Dataset

description: SYPHAXAR dataset is a dataset for Arabic text detection in the wild. It was collected from Tunisia in “Sfax” city, the second largest Tunisian city after the capital. A total of 3078 images were gathered through manual collection one by one, with each image energizing text detection challenges in nature according to real existing complexity of 15 different routes along with ring roads, intersections and roundabouts. These annotated images consist of more than 31000 objects, each of which is enclosed within a bounding box. The estimated overall distance covered is around 422 kilometers; all the paths mentioned and traveled contain commercial and service activities on both outward and return routes.It's worth noting that one of the notable contributions and challenges of the SYPHAXAR dataset is the inclusion of natural text scripts in the Arabic language, encompassing most of the existing challenges seen in state-of-the-art datasets.
DOI: 10.6084/m9.figshare.24069636
title: Alnus-rubra_S414_L001_R2_001_Second_Upload

description: Second upload attempt of R2_001.fasq
DOI: 10.6084/m9.figshare.24069636.v1
title: Alnus-rubra_S414_L001_R2_001_Second_Upload

description: Second upload attempt of R2_001.fasq
DOI: 10.5281/zenodo.8309935
title: Data for figures in "Next-generation ice nucleating particle sampling on aircraft: Characterization of the High-volume flow aERosol particle filter sAmpler (HERA)"

description: Atmospheric ice nucleating particle (INP) concentration data from the free troposphere are sparse, but urgently needed to understand vertical transport processes of INPs and their influence on cloud formation and properties. Here, we introduce the new High-volume flow aERosol particle filter sAmpler (HERA) which was specially developed for installation on research aircraft and subsequent offline INP analysis. HERA is a modular system constisting of a sampling unit and a powerful pump unit and has several features which were integrated specifically for INP sampling. Firstly, the pump unit enables sampling at flow rates exceeding 100 L min<sup>−1</sup>, which is well above typical flow rates of aircraft INP sampling systems described in the literature (~10 L min<sup>−1</sup>). Consequently, required sampling times to capture rare, high-temperature INPs (≥-15 °C) are reduced in comparison to other systems and potential source regions of INPs can be confined more precisely. Secondly, the sampling unit is designed as a seven-way valve, enabling switching between six filter holders and a bypass with one filter being sampled at a time. In contrast to other aircraft INP sampling systems, the valve position is controlled remotely via software so that manual filter changes in-flight are eliminated and the potential for sample contamination is decreased. This design is compatible with a high degree of automation, i.e., triggering filter changes depending on parameters like flight altitude, geographical location, temperature, or time. In addition to the design and principle of operation of HERA, this paper presents laboratory characterization experiments with size-selected test substances, i.e., SNOMAX® and Arizona Test Dust. The particles were sampled on filters with HERA, varying either particle diameter (300 nm to 800 nm) or flow rate (10 L min<sup>−1</sup> to 100 L min<sup>−1</sup>) between experiments. The subsequent offline INP analysis showed good agreement with literature data and comparable sampling efficiencies for all investigated particle sizes and flow rates. Furthermore, the deposition efficiency of atmospheric INPs in HERA was compared to a straightforward filter sampler and good agreement was found. Finally, results from the first campaign of HERA on the High Altitude and LOng range research aircraft (HALO) demonstrate the functionality of the new system in the context of aircraft application. The given csv files contain the data for reproducing the figures in the publication. The data structure of the csv files is explained in the README file.
description: Further information on the dataset is available upon request to grawe@tropos.de. We acknowledge funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation), projects 316508271 and 442648163 within PP 1294 (HALO).
DOI: 10.25345/c55t3g947
title: MassIVE MSV000092807 - rice rice ricerice rice ricerice rice ricerice rice ricerice rice rice
title: rice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice ricerice rice rice
DOI: 10.6084/m9.figshare.24066234
title: the polyketide to fatty acid transition in the evolution of animal lipid metabolism:the animal FAS-like PKSs

description: Animals use a distinct fatty acid synthase (FAS) most closely related to the type I polyketide synthase (PKS) enzymes. While FASs synthesize simple lipids, PKSs produce complex specialized metabolites. The evolutionary origin of the animal FAS, and its relationship to the diversity of PKSs, remain surprisingly mysterious despite the critical role of lipid synthesis in cellular metabolism. Previously, an enzyme EcPKS1 from sacoglossan molluscs was described that was closely related to animal FAS enzymes, but instead preformed PKS-like chemistry. A few other related enzymes were apparent in molluscs, mostly in the photosynthetic sacoglossans. Here, we asked whether such enzymes were limited to a small subset of species, and whether they might answer the mystery of the origin of animal lipid biosynthesis. We performed a sequence-based analysis, unexpectedly discovering a huge diversity of widespread EcPKS1-like enzymes that form a grade separating PKS from the animal FAS clade in phylogenetic analyses. PKSs and FASs are widespread among major animal phyla except for sponges and ctenophores, where they are apparently absent. Surprisingly, molluscs and arthropods contain abundant EcPKS1-like enzymes, correlated with their rich polyketide chemistry. Molluscan EcPKS1 relatives are associated with a lack of other defenses, consistent with the hypothesis that AFPKs provide a chemical defense for some lineages. By contrast, shelled molluscs (physically defended) generally contain PKSs instead. Arthropods have few or no PKSs, but their abundant EcPKS1-like enzymes contributed to their ecological and evolutionary success. For example, some of the genes found in the EcPKS1 clade were previously associated with cuticular hydrocarbon and pheromone biosynthesis. Based upon the biochemical, genetic, and phylogenetic features of these enzymes, we propose that they comprise a new family, the animal FAS-like PKSs (AFPKS). Although animal metabolism is well studied, surprising new metabolic enzyme classes such as AFPKs still await discovery and may be unrecognized drivers of hyperdiverse animal radiations including gastropods, beetles and spiders.
DOI: 10.6084/m9.figshare.24066234.v2
title: the polyketide to fatty acid transition in the evolution of animal lipid metabolism:the animal FAS-like PKSs

description: Animals use a distinct fatty acid synthase (FAS) most closely related to the type I polyketide synthase (PKS) enzymes. While FASs synthesize simple lipids, PKSs produce complex specialized metabolites. The evolutionary origin of the animal FAS, and its relationship to the diversity of PKSs, remain surprisingly mysterious despite the critical role of lipid synthesis in cellular metabolism. Previously, an enzyme EcPKS1 from sacoglossan molluscs was described that was closely related to animal FAS enzymes, but instead preformed PKS-like chemistry. A few other related enzymes were apparent in molluscs, mostly in the photosynthetic sacoglossans. Here, we asked whether such enzymes were limited to a small subset of species, and whether they might answer the mystery of the origin of animal lipid biosynthesis. We performed a sequence-based analysis, unexpectedly discovering a huge diversity of widespread EcPKS1-like enzymes that form a grade separating PKS from the animal FAS clade in phylogenetic analyses. PKSs and FASs are widespread among major animal phyla except for sponges and ctenophores, where they are apparently absent. Surprisingly, molluscs and arthropods contain abundant EcPKS1-like enzymes, correlated with their rich polyketide chemistry. Molluscan EcPKS1 relatives are associated with a lack of other defenses, consistent with the hypothesis that AFPKs provide a chemical defense for some lineages. By contrast, shelled molluscs (physically defended) generally contain PKSs instead. Arthropods have few or no PKSs, but their abundant EcPKS1-like enzymes contributed to their ecological and evolutionary success. For example, some of the genes found in the EcPKS1 clade were previously associated with cuticular hydrocarbon and pheromone biosynthesis. Based upon the biochemical, genetic, and phylogenetic features of these enzymes, we propose that they comprise a new family, the animal FAS-like PKSs (AFPKS). Although animal metabolism is well studied, surprising new metabolic enzyme classes such as AFPKs still await discovery and may be unrecognized drivers of hyperdiverse animal radiations including gastropods, beetles and spiders.
DOI: 10.6084/m9.figshare.19640886.v7
title: Replication Package - Taxonomy of Inline Code Comments Smells

description: Artifacts of our study on the taxonomy of inline code comment smells
DOI: 10.6084/m9.figshare.24076191
title: ashley_sandpaper_seed_data.csv

description: This is the continuous data across 10 sandpaper grits, with all the testing done at USC by Ashlesha Sharma (the OSU data was the fine-medium-coarse and was done by Stessman).
DOI: 10.6084/m9.figshare.24076191.v1
title: ashley_sandpaper_seed_data.csv

description: This is the continuous data across 10 sandpaper grits, with all the testing done at USC by Ashlesha Sharma (the OSU data was the fine-medium-coarse and was done by Stessman).
DOI: 10.5281/zenodo.8138960
title: Data and code for "Revealing the free energy landscape of halide perovskites: Metastability and transition characters in CsPbBr3 and MAPbI3"

description: This record contains a neuroevolution potential (NEP) model (<code>nep-MAPI-SCAN.txt</code> ) for MAPbI3 used in the linked publication. The model can be used in conjunction with the GPUMD package. The calorine package provides a Python interface to GPUMD.<br> Several primitive structures in extended xyz format can be found in the <code>*.xyz</code> files. These structures have been relaxed using the NEP model included here. The <code>demo-for-using-structures-and-model.py</code> script illustrates how to access the structures and model.
DOI: 10.5281/zenodo.8138961
title: Data and code for "Revealing the free energy landscape of halide perovskites: Metastability and transition characters in CsPbBr3 and MAPbI3"

description: This record contains a neuroevolution potential (NEP) model (<code>nep-MAPI-SCAN.txt</code> ) for MAPbI3 used in the linked publication. The model can be used in conjunction with the GPUMD package. The calorine package provides a Python interface to GPUMD.<br> Several primitive structures in extended xyz format can be found in the <code>*.xyz</code> files. These structures have been relaxed using the NEP model included here. The <code>demo-for-using-structures-and-model.py</code> script illustrates how to access the structures and model.
DOI: 10.5281/zenodo.8309963
title: Data and code for "Revealing the free energy landscape of halide perovskites: Metastability and transition characters in CsPbBr3 and MAPbI3"

description: This record contains a neuroevolution potential (NEP) model (<code>nep-MAPI-SCAN.txt</code> ) for MAPbI3 used in the linked publication. The model can be used in conjunction with the GPUMD package. The calorine package provides a Python interface to GPUMD.<br> Several primitive structures in extended xyz format can be found in the <code>*.xyz</code> files. These structures have been relaxed using the NEP model included here. The <code>demo-for-using-structures-and-model.py</code> script illustrates how to access the structures and model.
DOI: 10.5517/ccdc.csd.cc2cwyz6
title: CCDC 2201619: Experimental Crystal Structure Determination

description: Related Article: Timofey D. Moseev, Egor A. Nikiforov, Mikhail V. Varaksin, Maria I. Valieva, Dmitry S. Kopchuk, Igor A. Litvinov, Vasiliy S. Gaviko, Pavel A. Slepukhin, Grigory V. Zyryanov, Valery N. Charushin, Oleg N. Chupakhin|2023|Inorg.Chim.Acta|558|121727|doi:10.1016/j.ica.2023.121727
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.