cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26738193.v1
title: Additional file 7 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 7.
DOI: 10.6084/m9.figshare.26738196
title: Additional file 8 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 8.
DOI: 10.6084/m9.figshare.26738196.v1
title: Additional file 8 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 8.
DOI: 10.6084/m9.figshare.26738199
title: Additional file 9 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 9.
DOI: 10.6084/m9.figshare.26738199.v1
title: Additional file 9 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 9.
DOI: 10.6084/m9.figshare.26738202
title: Additional file 10 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 10.
DOI: 10.6084/m9.figshare.26738202.v1
title: Additional file 10 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 10.
DOI: 10.6084/m9.figshare.26738205
title: Additional file 11 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 11.
DOI: 10.6084/m9.figshare.26738205.v1
title: Additional file 11 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 11.
DOI: 10.6084/m9.figshare.26738208
title: Additional file 12 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 12.
DOI: 10.6084/m9.figshare.26738208.v1
title: Additional file 12 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 12.
DOI: 10.6084/m9.figshare.26738211
title: Additional file 13 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 13.
DOI: 10.6084/m9.figshare.26738211.v1
title: Additional file 13 of Optimization of a deep mutational scanning workflow to improve quantification of mutation effects on protein–protein interactions

description: Supplementary Material 13.
DOI: 10.15468/dl.byutp2
title: Occurrence Download

description: A dataset containing 22967046 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-74.65608 40.4443, -73.16275 40.4443, -73.16275 41.0192, -74.65608 41.0192, -74.65608 40.4443))",
 "Year is greater than or equal to 2000",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 22967046 records from 248 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072981-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12634309
title: Covid-19 apps in India

description: Dataset of Covid-19 mobile apps released in India in 2020. I first published this compilation in June 2020. 

Some are documented further in the article titled "Tracking quarantine, tracing cases, sharing info Can these govt-issued apps help fight Covid-19?" available at https://zenodo.org/records/12633530 as published on CitizenMatters.in

https://citizenmatters.in/tracking-quarantine-tracing-cases-sharing-info-can-these-govt-issued-apps-help-fight-covid-19/

Details of my recorded talk on the topic "Usability and privacy issues in government-issued Covid-19 apps in India" hosted by Hasgeek and Thus Critique, June 2020: https://hasgeek.com/thus/usability-and-privacy-issues-in-government-issued-covid-19-apps-in-india2/

Video of the talk: https://youtu.be/z2fjZIIbALc
DOI: 10.6084/m9.figshare.26094499
title: Additional file 2 of A comprehensive workflow for optimizing RNA-seq data analysis

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26094499.v1
title: Additional file 2 of A comprehensive workflow for optimizing RNA-seq data analysis

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26738391
title: Additional file 3 of A comprehensive workflow for optimizing RNA-seq data analysis

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.26738391.v1
title: Additional file 3 of A comprehensive workflow for optimizing RNA-seq data analysis

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.26738397
title: Additional file 5 of A comprehensive workflow for optimizing RNA-seq data analysis

description: Supplementary Material 5.
DOI: 10.6084/m9.figshare.26738397.v1
title: Additional file 5 of A comprehensive workflow for optimizing RNA-seq data analysis

description: Supplementary Material 5.
DOI: 10.6084/m9.figshare.26738400
title: Additional file 6 of A comprehensive workflow for optimizing RNA-seq data analysis

description: Supplementary Material 6.
DOI: 10.6084/m9.figshare.26738400.v1
title: Additional file 6 of A comprehensive workflow for optimizing RNA-seq data analysis

description: Supplementary Material 6.
DOI: 10.6084/m9.figshare.26738403
title: Additional file 7 of A comprehensive workflow for optimizing RNA-seq data analysis

description: Supplementary Material 7.
DOI: 10.6084/m9.figshare.26738403.v1
title: Additional file 7 of A comprehensive workflow for optimizing RNA-seq data analysis

description: Supplementary Material 7.
DOI: 10.6084/m9.figshare.26094505
title: Additional file 2 of scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis

description: Additional file 2: Supplementary tables 1 to 4.
DOI: 10.6084/m9.figshare.26094505.v1
title: Additional file 2 of scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis

description: Additional file 2: Supplementary tables 1 to 4.
DOI: 10.6084/m9.figshare.26094508
title: Additional file 2 of Lung cancer metabolomics: a pooled analysis in the Cancer Prevention Studies

description: Additional file 2: Table S1. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in the entire population. Table S2. Lipid-associated metabolic pathways components identified in lung cancer cases compared to controls. Table S3. Amino acids-associated metabolic pathways components identified in lung cancer cases compared to controls. Table S4. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in female stratum. Table S5. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in male stratum. Table S6. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in follow-up time ≤ 3 years stratum. Table S7. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in follow-up time &gt; 3 years stratum. Table S8. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in never smokers stratum. Table S9. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in ever smokers stratum. Table S10. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in localized lung cancer stage stratum. Table S11. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in reginal lung cancer stage stratum. Table S12. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in distant lung cancer stage stratum. Table S13. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in squamous cell carcinoma stratum. Table S14. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in adenocarcinoma stratum.
DOI: 10.6084/m9.figshare.26094508.v1
title: Additional file 2 of Lung cancer metabolomics: a pooled analysis in the Cancer Prevention Studies

description: Additional file 2: Table S1. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in the entire population. Table S2. Lipid-associated metabolic pathways components identified in lung cancer cases compared to controls. Table S3. Amino acids-associated metabolic pathways components identified in lung cancer cases compared to controls. Table S4. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in female stratum. Table S5. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in male stratum. Table S6. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in follow-up time ≤ 3 years stratum. Table S7. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in follow-up time &gt; 3 years stratum. Table S8. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in never smokers stratum. Table S9. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in ever smokers stratum. Table S10. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in localized lung cancer stage stratum. Table S11. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in reginal lung cancer stage stratum. Table S12. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in distant lung cancer stage stratum. Table S13. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in squamous cell carcinoma stratum. Table S14. Metabolites associated with lung cancer risk at P-value &lt; 0.05 in adenocarcinoma stratum.
DOI: 10.6084/m9.figshare.26094394
title: Additional file 1 of Anti-acetylated-tau immunotherapy is neuroprotective in tauopathy and brain injury

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26094394.v1
title: Additional file 1 of Anti-acetylated-tau immunotherapy is neuroprotective in tauopathy and brain injury

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26094511
title: Additional file 2 of Anti-acetylated-tau immunotherapy is neuroprotective in tauopathy and brain injury

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26094511.v1
title: Additional file 2 of Anti-acetylated-tau immunotherapy is neuroprotective in tauopathy and brain injury

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26738472
title: Additional file 3 of Anti-acetylated-tau immunotherapy is neuroprotective in tauopathy and brain injury

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26738472.v1
title: Additional file 3 of Anti-acetylated-tau immunotherapy is neuroprotective in tauopathy and brain injury

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26738496
title: Additional file 9 of Deregulation of oxidative phosphorylation pathways in embryos derived in vitro from prepubertal and pubertal heifers based on whole-transcriptome sequencing

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.26738496.v1
title: Additional file 9 of Deregulation of oxidative phosphorylation pathways in embryos derived in vitro from prepubertal and pubertal heifers based on whole-transcriptome sequencing

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.26738499
title: Additional file 10 of Deregulation of oxidative phosphorylation pathways in embryos derived in vitro from prepubertal and pubertal heifers based on whole-transcriptome sequencing

description: Supplementary Material 10
DOI: 10.15468/dl.zyt5tq
title: Occurrence Download

description: A dataset containing 191348 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NOAA National Coral Reef Monitoring Program Coral Demographic Data"
 ]
}

 The dataset includes 191348 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020099-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2s6wcb
title: Occurrence Download

description: A dataset containing 191529 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventaire des Messicoles - Inventaire Messicoles (FCBN)"
 ]
}

 The dataset includes 191529 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020097-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/gkbrt5t62r
title: Impacts of Organic Fertilizer Substitution on Soil

description: Experimental Design:A three-year consecutive field experiment was conducted using an equal nitrogen application design with the following treatments: no fertilizer control (CK), conventional farmer fertilization (CF), and organic fertilizer substitutions at 10% (SF1), 20% (SF2), 30% (SF3), 40% (SF4), and 50% (SF5) of chemical fertilizer. Key soil parameters were analyzed, including available nutrients (alkali-hydrolyzable nitrogen, available phosphorus, and available potassium), organic matter content, enzyme activities (e.g., urease and phosphatase), and microbial community structure (bacterial and fungal diversity and abundance).
DOI: 10.17632/gkbrt5t62r.1
title: Impacts of Organic Fertilizer Substitution on Soil

description: Experimental Design:A three-year consecutive field experiment was conducted using an equal nitrogen application design with the following treatments: no fertilizer control (CK), conventional farmer fertilization (CF), and organic fertilizer substitutions at 10% (SF1), 20% (SF2), 30% (SF3), 40% (SF4), and 50% (SF5) of chemical fertilizer. Key soil parameters were analyzed, including available nutrients (alkali-hydrolyzable nitrogen, available phosphorus, and available potassium), organic matter content, enzyme activities (e.g., urease and phosphatase), and microbial community structure (bacterial and fungal diversity and abundance).
DOI: 10.17632/j2dsjxbz59
title: CaMKII monomers are sufficient for GluN2B binding, co-condensation, and synaptic potentiation

description: Raw data for main and supplemental figures
DOI: 10.17632/j2dsjxbz59.1
title: CaMKII monomers are sufficient for GluN2B binding, co-condensation, and synaptic potentiation

description: Raw data for main and supplemental figures
DOI: 10.15485/2589181
title: Data for Bandopadhyay et al., "Soil microbial ecology and microbiome-metabolite linkages improve understanding of ecosystem states along terrestrial-aquatic interfaces"

description: These data are from Bandopadhyay et al., "Soil microbial ecology and microbiome-metabolite linkages improve understanding of ecosystem states along terrestrial-aquatic interfaces". This study aims to understand the soil microbial ecology along terrestrial-aquatic interfaces of a freshwater and estuarine region and how it relates to organic matter. We analyzed soil microbial (16S rRNA gene) and organic matter (Fourier-transform ion cyclotron resonance mass spectrometry, FTICR-MS) composition from upland (forested), transition (stressed forest), and wetland positions at three sites in each of the Lake Erie (freshwater) and Chesapeake Bay (estuarine) regions. This dataset includes 16S rRNA gene amplicon data (only processed file types included here) and organic matter composition from FTICR-MS data (raw and processed files included here) from upland (forested), transition (stressed forest), and wetland positions at three sites in each of the Lake Erie and Chesapeake Bay regions. These sites are part of the COMPASS-FME project (https://compass.pnnl.gov/FME/COMPASSFME).File formats and software needed to access files: 16S rRNA gene amplicon data:These files follow the format reported here https://ess-dive.gitbook.io/amplicon-sequencing-reporting-format#updates-in-v1.0.1. As per this format, there are four file types reported:1. Taxon tables (also called sequence-by-sample or OTU (operational taxonomic unit)/ESV (exact sequence variant) tables) : available in a .txt file format and accessible using TextEdit or MS Excel.2. Representative sequences (also called consensus sequences) : available in a .fasta format and accessible using TextEdit.3. Sequencing metadata : available in a MS Excel workbook file format and CSV file format4. Bioinformatic metadata : available in a MS Excel workbook file format and CSV file formatFTICR-MS data:1. Raw data converted to a processed file with intensities of the peaks in the given samples : available  in a MS Excel CSV file format2. Processed file used in analyses and visualizations (appended as icr_long_) : available in a MS Excel CSV file format3. Metadata file for ICR features (appended as icr_meta) : available  in a MS Excel CSV file format
DOI: 10.26023/849v-dwr3-7407
title: BAMEX: NWS Cooperative Observer 15-minute Precipitation Data. Version 1.0

description: This data set contains 15-minute resolution precipitation data from the National Weather Service Cooperative Network. These stations are located across the BAMEX region. This data set covers the period from 20 May to 7 July 2003
DOI: 10.15468/dl.ayrx8k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spiraea media",
 "Country is Dominican Republic",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044538-250920141307145/datasets/export for details.
DOI: 10.15468/dl.7579dd
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spiraea media",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044539-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wamtja
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spiraea media",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044540-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/y1vd-jc0p-s90h
title: BAMEX: NWS Cooperative Observer Hourly Precipitation Data. Version 1.0

description: This data set contains hourly resolution precipitation data from the National Weather Service Cooperative Network. This data set covers the period from 20 May to 07 July 2003.
DOI: 10.15468/skdry7
title: Abilene Christian University Fish Specimens (Arctos)

description: The ACUNHC Fish Collection is comprised of 70 specimens. Most of the specimens are from Taylor county, Texas.
DOI: 10.26023/2xta-kcrv-ms0r
title: BAMEX: ARM Raman Lidar Aerosol Scattering Ratio Data. Version 1.0

description: This data set contains 10 minute resolution aerosol scattering ratio from the Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) Raman Lidar (RL). The RL is located at the ARM Central Facility near Lamont, OK. This data set covers the period from 20 May to 07 July 2003. The data are in netCDF format.
DOI: 10.15468/dl.fur5cn
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spiraea media",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044541-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tf9r3b
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spiraea media",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044542-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yet2wv
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spiraea media",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 92 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044543-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/34ppmw
title: Abilene Christian University Mammal Specimens (Arctos)

description: The ACUNHC Mammal Collection is comprised of roughly 2,500 specimens and 1,500 tissue samples. The collection was established in 1994 and contains specimens from all continents except Europe and Antarctica. Half of our specimens are from Texas with significant holdings from Ecuador (693), Michigan (152), Arizona (108), and New Mexico (82). It boasts one of the largest holdings of Ecuadorian mammals in the United States.
DOI: 10.26023/fhtf-8p5y-wz04
title: BAMEX: ARM Raman Lidar Best Estimate Data. Version 1.0

description: This data set contains 10 minute resolution precipitable water vapor along with vertical profiles of water vapor mixing ratio, relative humidity, linear depolarization ratio, and aerosol scattering ratio, from the Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) Raman Lidar (RL). The RL is located at the ARM Central Facility near Lamont, OK. This data set covers the period from 20 May to 07 July 2003. The data are in netCDF format.
DOI: 10.15468/dl.kr4mkx
title: Occurrence Download

description: A dataset containing 66436 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tardigrada"
 ]
}

 The dataset includes 66436 records from 307 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044520-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aydcmz
title: Occurrence Download

description: A dataset containing 15034 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Mirounga angustirostris"
 ]
}

 The dataset includes 15034 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044544-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/k6yr-90eh-8x0y
title: BAMEX: ARM Raman Lidar Depolarization Ratio Data. Version 1.0

description: This data set contains 10 minutes resolution depolarization ratio from the Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) Raman Lidar (RL). The RL is located at the ARM Central Facility near Lamont, OK. This data set covers the time period from 20 May to 07 July 2003. The data are in netCDF format.