cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12757366
title: Additional file 1 of Fruit and vegetable consumption before and during pregnancy and birth weight of new-borns in Japan: the Tohoku medical megabank project birth and three-generation cohort study

description: Additional file 1: Table S1. Characteristics of participants by fruit consumption from pre- to early pregnancy. Table S2. Characteristics of participants by vegetable consumption from pre- to early pregnancy. Table S3. Characteristics of participants by fruit consumption from early to mid-pregnancy. Table S4. Characteristics of participants by vegetable consumption from early to mid-pregnancy. Table S5. Energy-adjusted nutrient consumption from pre- to mid-pregnancy and new-born birth weight. Table S6. Fruit consumption from pre- to mid-pregnancy and new-born birth weight adjusted by nutrient consumption. Table S7. Energy-adjusted fruit and vegetable consumption from pre- to mid-pregnancy and preterm birth risk.
DOI: 10.6084/m9.figshare.12757367.v1
title: Additional file 1 of Chronic cortisol exposure in early development leads to neuroendocrine dysregulation in adulthood

description: Additional file 1: ANOVA of tissue cortisol levels shown in Fig. 1b.
DOI: 10.6084/m9.figshare.12757349
title: Additional file 4 of Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine

description: Additional file 4. Genes with a significant interaction in their gene expression response to low versus high phosphate supply between two homo-grafts of grapevine
DOI: 10.6084/m9.figshare.12757355
title: Additional file 6 of Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine

description: Additional file 6. Genes differentially expressed between hetero- and homo-grafts of grapevine grown under either high or low phosphate supply.
DOI: 10.6084/m9.figshare.12757355.v1
title: Additional file 6 of Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine

description: Additional file 6. Genes differentially expressed between hetero- and homo-grafts of grapevine grown under either high or low phosphate supply.
DOI: 10.6084/m9.figshare.12757366.v1
title: Additional file 1 of Fruit and vegetable consumption before and during pregnancy and birth weight of new-borns in Japan: the Tohoku medical megabank project birth and three-generation cohort study

description: Additional file 1: Table S1. Characteristics of participants by fruit consumption from pre- to early pregnancy. Table S2. Characteristics of participants by vegetable consumption from pre- to early pregnancy. Table S3. Characteristics of participants by fruit consumption from early to mid-pregnancy. Table S4. Characteristics of participants by vegetable consumption from early to mid-pregnancy. Table S5. Energy-adjusted nutrient consumption from pre- to mid-pregnancy and new-born birth weight. Table S6. Fruit consumption from pre- to mid-pregnancy and new-born birth weight adjusted by nutrient consumption. Table S7. Energy-adjusted fruit and vegetable consumption from pre- to mid-pregnancy and preterm birth risk.
DOI: 10.6084/m9.figshare.12757343
title: Additional file 2 of Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine

description: Additional file 2. Genes differentially expressed between the roots of two grapevine genotypes grown grafted under high or low phosphate supply (HP and LP respectively).
DOI: 10.6084/m9.figshare.12757349.v1
title: Additional file 4 of Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine

description: Additional file 4. Genes with a significant interaction in their gene expression response to low versus high phosphate supply between two homo-grafts of grapevine
DOI: 10.6084/m9.figshare.12757340
title: Additional file 1 of Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine

description: Additional file 1. Genes differentially expressed between high or low phosphate treatments (HP and LP respectively) in four scion/rootstock combinations of grapevine.
DOI: 10.6084/m9.figshare.12757343.v1
title: Additional file 2 of Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine

description: Additional file 2. Genes differentially expressed between the roots of two grapevine genotypes grown grafted under high or low phosphate supply (HP and LP respectively).
DOI: 10.6084/m9.figshare.12757334
title: Additional file 11 of Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine

description: Additional file 11. Gene module membership. Module eigengene-based connectivity values for each gene in each module identified in a WGCNA analysis of genes expressed in the roots of grafted grapevine grown under two phosphate supplies.
DOI: 10.6084/m9.figshare.12757340.v1
title: Additional file 1 of Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine

description: Additional file 1. Genes differentially expressed between high or low phosphate treatments (HP and LP respectively) in four scion/rootstock combinations of grapevine.
DOI: 10.6084/m9.figshare.12757331
title: Additional file 10 of Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine

description: Additional file 10. Genes with a significant interaction in their gene expression response to low versus high phosphate supply between the scion/rootstock combinations PN/1103P and 1103P/1103P. PN: Vitis vinifera cv. Pinot noir; 1103P: V. rupestris x V. berlandieri cv. 1103 Paulsen.
DOI: 10.6084/m9.figshare.12757334.v1
title: Additional file 11 of Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine

description: Additional file 11. Gene module membership. Module eigengene-based connectivity values for each gene in each module identified in a WGCNA analysis of genes expressed in the roots of grafted grapevine grown under two phosphate supplies.
DOI: 10.6084/m9.figshare.12757331.v1
title: Additional file 10 of Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine

description: Additional file 10. Genes with a significant interaction in their gene expression response to low versus high phosphate supply between the scion/rootstock combinations PN/1103P and 1103P/1103P. PN: Vitis vinifera cv. Pinot noir; 1103P: V. rupestris x V. berlandieri cv. 1103 Paulsen.
DOI: 10.6084/m9.figshare.12757282
title: Additional file 1 of On the survival of 48 h Plasmodium vivax Aotus monkey-derived ex vivo cultures: the role of leucocytes filtration and chemically defined lipid concentrate media supplementation

description: Additional file 1: Table S1. Individual P. vivax SAL-1 infected Aotus monkeys parasitemias of filtered or retained iRBCs ex-vivo cultures incubated with McCoy’s5A media supplemented with serum and lipiid concentrate alone or in combination.
DOI: 10.6084/m9.figshare.12757282.v1
title: Additional file 1 of On the survival of 48 h Plasmodium vivax Aotus monkey-derived ex vivo cultures: the role of leucocytes filtration and chemically defined lipid concentrate media supplementation

description: Additional file 1: Table S1. Individual P. vivax SAL-1 infected Aotus monkeys parasitemias of filtered or retained iRBCs ex-vivo cultures incubated with McCoy’s5A media supplemented with serum and lipiid concentrate alone or in combination.
DOI: 10.6084/m9.figshare.12757241
title: Additional file 1 of Identification of a protein signature for predicting overall survival of hepatocellular carcinoma: a study based on data mining

description: Additional file 1:Table S1. The detailed clinical information of CPTAC-HCC patients. Table S2. The 422 differentially expressed proteins identified using the CPTAC database. Table S3. A total of 542 interactions and 236 nodes screened to establish the PPI network. Table S4. The top five most contiguous nodes: CDK1, AOX1, CYP2E1, CYP3A4, and TOP2A. Table S5. Cox regression analysis of the identified 105 survival-related proteins. Table S6. Univariate Cox regression analysis of survival-related proteins. Table S7. Multivariate Cox regression analysis of survival-related proteins and 41 proteins identified as independent prognostic factors for OS. Table S8. ROC curves investigating the use of the protein patterns as early predictors of HCC incidence and the 8 proteins with AUC value above 0.7. Table S9. The relationship between the 8 proteins and clinical factors. Table S10. Univariate Cox regression analysis exploring the expression of survival-related proteins in the TCPA database.
DOI: 10.6084/m9.figshare.12757235
title: Additional file 2 of Measuring quality of life in Duchenne muscular dystrophy: a systematic review of the content and structural validity of commonly used instruments

description: Additional file 2. Example COSMIN ratings KIDSCREEN-52. Example COSMIN content validity rating spreadsheet for the KIDSCREEN-52.
DOI: 10.6084/m9.figshare.12757241.v1
title: Additional file 1 of Identification of a protein signature for predicting overall survival of hepatocellular carcinoma: a study based on data mining

description: Additional file 1:Table S1. The detailed clinical information of CPTAC-HCC patients. Table S2. The 422 differentially expressed proteins identified using the CPTAC database. Table S3. A total of 542 interactions and 236 nodes screened to establish the PPI network. Table S4. The top five most contiguous nodes: CDK1, AOX1, CYP2E1, CYP3A4, and TOP2A. Table S5. Cox regression analysis of the identified 105 survival-related proteins. Table S6. Univariate Cox regression analysis of survival-related proteins. Table S7. Multivariate Cox regression analysis of survival-related proteins and 41 proteins identified as independent prognostic factors for OS. Table S8. ROC curves investigating the use of the protein patterns as early predictors of HCC incidence and the 8 proteins with AUC value above 0.7. Table S9. The relationship between the 8 proteins and clinical factors. Table S10. Univariate Cox regression analysis exploring the expression of survival-related proteins in the TCPA database.
DOI: 10.6084/m9.figshare.12757235.v1
title: Additional file 2 of Measuring quality of life in Duchenne muscular dystrophy: a systematic review of the content and structural validity of commonly used instruments

description: Additional file 2. Example COSMIN ratings KIDSCREEN-52. Example COSMIN content validity rating spreadsheet for the KIDSCREEN-52.
DOI: 10.6084/m9.figshare.12757156
title: Additional file 9 of Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data

description: Additional file 9: Table S7. Differential node weights comparing GEN KPNNs trained to distinguish different molecular subtypes of glioblastoma.
DOI: 10.6084/m9.figshare.12757153
title: Additional file 8 of Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data

description: Additional file 8: Table S6. Differential node weights comparing GEN KPNNs trained to distinguish leukemic and normal cells at different stages of hematopoietic differentiation for acute myeloid leukemia (AML).
DOI: 10.6084/m9.figshare.12757147
title: Additional file 6 of Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data

description: Additional file 6: Table S4. Results of an Enrichr analysis for differential node weights from the Human Cell Atlas (HCA) dataset.
DOI: 10.6084/m9.figshare.12757150
title: Additional file 7 of Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data

description: Additional file 7: Table S5. Differential node weights comparing GEN KPNNs trained to distinguish progenitor-like and mature cells obtained from bone and skin for Langerhans cell histiocytosis (LCH).
DOI: 10.6084/m9.figshare.12757144
title: Additional file 5 of Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data

description: Additional file 5: Table S3. Differential node weights comparing GEN KPNNs trained to distinguish immune cell types obtained from bone marrow vs cord blood, based on data from the Human Cell Atlas (HCA).
DOI: 10.6084/m9.figshare.12757141
title: Additional file 4 of Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data

description: Additional file 4: Table S2. Results of gene set enrichment analysis for differential nodes from the TCR KPNN.
DOI: 10.6084/m9.figshare.12757141.v1
title: Additional file 4 of Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data

description: Additional file 4: Table S2. Results of gene set enrichment analysis for differential nodes from the TCR KPNN.
DOI: 10.6084/m9.figshare.12757138
title: Additional file 3 of Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data

description: Additional file 3: Table S1. Differential node weights for the TCR KPNN trained on actual data vs control inputs.
DOI: 10.6084/m9.figshare.12757123
title: Additional file 1 of Healthcare retention and clinical outcomes among adolescents living with HIV after transition from pediatric to adult care: a systematic review

description: Additional file 1. Assessment of the quality of manuscripts reviewed. This document provides a summary of the criteria used to assess the quality of each manuscript, along with the score of each manuscript.
DOI: 10.6084/m9.figshare.12757123.v1
title: Additional file 1 of Healthcare retention and clinical outcomes among adolescents living with HIV after transition from pediatric to adult care: a systematic review

description: Additional file 1. Assessment of the quality of manuscripts reviewed. This document provides a summary of the criteria used to assess the quality of each manuscript, along with the score of each manuscript.
DOI: 10.6084/m9.figshare.12757048
title: Additional file 1 of The diagnostic value of SPECT/CT in predicting the occurrence of osteonecrosis following femoral neck fracture: a prospective cohort study

description: Additional file 1.
DOI: 10.6084/m9.figshare.12757048.v1
title: Additional file 1 of The diagnostic value of SPECT/CT in predicting the occurrence of osteonecrosis following femoral neck fracture: a prospective cohort study

description: Additional file 1.
DOI: 10.6084/m9.figshare.12756976
title: Additional file 4 of Insulator-based loops mediate the spreading of H3K27me3 over distant micro-domains repressing euchromatin genes

description: Additional file 4: Table S3. List of oligos used in this study.
DOI: 10.6084/m9.figshare.12756973
title: Additional file 3 of Insulator-based loops mediate the spreading of H3K27me3 over distant micro-domains repressing euchromatin genes

description: Additional file 3: Table S2. List of genes associated with the binding sites of insulator proteins.
DOI: 10.6084/m9.figshare.12756976.v1
title: Additional file 4 of Insulator-based loops mediate the spreading of H3K27me3 over distant micro-domains repressing euchromatin genes

description: Additional file 4: Table S3. List of oligos used in this study.
DOI: 10.6084/m9.figshare.12756967
title: Additional file 2 of Insulator-based loops mediate the spreading of H3K27me3 over distant micro-domains repressing euchromatin genes

description: Additional file 2: Table S1. List of genes associated with H3K27me3 micro-domains.
DOI: 10.6084/m9.figshare.12756973.v1
title: Additional file 3 of Insulator-based loops mediate the spreading of H3K27me3 over distant micro-domains repressing euchromatin genes

description: Additional file 3: Table S2. List of genes associated with the binding sites of insulator proteins.
DOI: 10.6084/m9.figshare.12756967.v1
title: Additional file 2 of Insulator-based loops mediate the spreading of H3K27me3 over distant micro-domains repressing euchromatin genes

description: Additional file 2: Table S1. List of genes associated with H3K27me3 micro-domains.
DOI: 10.6084/m9.figshare.12756853
title: Additional file 1 of Antibiotic-induced alterations and repopulation dynamics of yellowtail kingfish microbiota

description: Additional file 1: Table S1. Water temperature (°C) recorded during the experiment. Table S2: Oxygen concentration (%) recorded during the experiment. Table S3: pH recorded during the experiment. Table S4: Salinity (‰) recorded during the experiment. Table S5: Ammonia concentration (ppm) recorded during the experiment. Table S6: Characteristics (weight and length) of the fish stocked in the 12 experimental tanks prior the start of the experiment. Table S7: Differential abundant ASVs found in the gut microbiota of fish housed in seacage and tanks. Table S8: Differential abundant ASVs found in the gut microbiota of fish treated with antibiotic and non-treated with antibiotic. Table S9: Pair-wise PERMANOVA results investigating the influence of time on the skin microbial communities. Table S10: Differential abundant ASVs found in the skin microbiota of fish treated with antibiotic and non-treated with antibiotic.
DOI: 10.6084/m9.figshare.12756850
title: Additional file 1 of A knowledge-based intensity-modulated radiation therapy treatment planning technique for locally advanced nasopharyngeal carcinoma radiotherapy

description: Additional file 1.
DOI: 10.6084/m9.figshare.12756853.v1
title: Additional file 1 of Antibiotic-induced alterations and repopulation dynamics of yellowtail kingfish microbiota

description: Additional file 1: Table S1. Water temperature (°C) recorded during the experiment. Table S2: Oxygen concentration (%) recorded during the experiment. Table S3: pH recorded during the experiment. Table S4: Salinity (‰) recorded during the experiment. Table S5: Ammonia concentration (ppm) recorded during the experiment. Table S6: Characteristics (weight and length) of the fish stocked in the 12 experimental tanks prior the start of the experiment. Table S7: Differential abundant ASVs found in the gut microbiota of fish housed in seacage and tanks. Table S8: Differential abundant ASVs found in the gut microbiota of fish treated with antibiotic and non-treated with antibiotic. Table S9: Pair-wise PERMANOVA results investigating the influence of time on the skin microbial communities. Table S10: Differential abundant ASVs found in the skin microbiota of fish treated with antibiotic and non-treated with antibiotic.
DOI: 10.6084/m9.figshare.12756850.v1
title: Additional file 1 of A knowledge-based intensity-modulated radiation therapy treatment planning technique for locally advanced nasopharyngeal carcinoma radiotherapy

description: Additional file 1.
DOI: 10.6084/m9.figshare.12756839
title: Additional file 1 of Application of the human estrogen receptor within a synthetic transcription factor in Trichoderma reesei

description: Additional file 1. Partial coding region of the hERα (aa 282–595), codon-optimized for T. reesei, including recognition sites for restriction endonucleases for cloning purposes.
DOI: 10.6084/m9.figshare.12756839.v1
title: Additional file 1 of Application of the human estrogen receptor within a synthetic transcription factor in Trichoderma reesei

description: Additional file 1. Partial coding region of the hERα (aa 282–595), codon-optimized for T. reesei, including recognition sites for restriction endonucleases for cloning purposes.
DOI: 10.6084/m9.figshare.12756820
title: Additional file 2 of Low-arginine and low-protein diets induce hepatic lipid accumulation through different mechanisms in growing rats

description: Additional file 2: Table S1 Plasma glucose and insulin levels in rats fed the 5PAA and low Arg diets. Table S2 List of apolipoprotein genes.
DOI: 10.6084/m9.figshare.12756815
title: Additional file 2 of Heat-response patterns of the heat shock transcription factor family in advanced development stages of wheat (Triticum aestivum L.) and thermotolerance-regulation by TaHsfA2–10

description: Additional file 2. Raw data of Fig. 3, Fig. 6, Fig. 7 and Fig. 8.
DOI: 10.6084/m9.figshare.12756815.v1
title: Additional file 2 of Heat-response patterns of the heat shock transcription factor family in advanced development stages of wheat (Triticum aestivum L.) and thermotolerance-regulation by TaHsfA2–10

description: Additional file 2. Raw data of Fig. 3, Fig. 6, Fig. 7 and Fig. 8.
DOI: 10.6084/m9.figshare.12756820.v1
title: Additional file 2 of Low-arginine and low-protein diets induce hepatic lipid accumulation through different mechanisms in growing rats

description: Additional file 2: Table S1 Plasma glucose and insulin levels in rats fed the 5PAA and low Arg diets. Table S2 List of apolipoprotein genes.
DOI: 10.6084/m9.figshare.12756805
title: Additional file 2 of Efficacy of benralizumab for patients with severe eosinophilic asthma: a retrospective, real-life study

description: Additional file 2. Patients characteristics at baseline in four subgroup [male, female, AERD (−) and (+)]
DOI: 10.6084/m9.figshare.12756805.v1
title: Additional file 2 of Efficacy of benralizumab for patients with severe eosinophilic asthma: a retrospective, real-life study

description: Additional file 2. Patients characteristics at baseline in four subgroup [male, female, AERD (−) and (+)]
DOI: 10.6084/m9.figshare.12756799
title: Additional file 1 of Efficacy of benralizumab for patients with severe eosinophilic asthma: a retrospective, real-life study

description: Additional file 1. Characteristics of 12 patients who received other biologics before benralizumab treatment
DOI: 10.6084/m9.figshare.12756799.v1
title: Additional file 1 of Efficacy of benralizumab for patients with severe eosinophilic asthma: a retrospective, real-life study

description: Additional file 1. Characteristics of 12 patients who received other biologics before benralizumab treatment
DOI: 10.6084/m9.figshare.12756718
title: Additional file 5 of Napabucasin overcomes cisplatin resistance in ovarian germ cell tumor-derived cell line by inhibiting cancer stemness

description: Additional file 3: Table S2 Overview of top differentially methylated and expressed genes
DOI: 10.6084/m9.figshare.12756718.v1
title: Additional file 5 of Napabucasin overcomes cisplatin resistance in ovarian germ cell tumor-derived cell line by inhibiting cancer stemness

description: Additional file 3: Table S2 Overview of top differentially methylated and expressed genes
DOI: 10.6084/m9.figshare.12756677
title: Additional file 1 of Investigation of the effects of P1 on HC-pro-mediated gene silencing suppression through genetics and omics approaches

description: Additional file 1. The profiles of protemoics.
DOI: 10.6084/m9.figshare.12756677.v1
title: Additional file 1 of Investigation of the effects of P1 on HC-pro-mediated gene silencing suppression through genetics and omics approaches

description: Additional file 1. The profiles of protemoics.
DOI: 10.6084/m9.figshare.12756655
title: Additional file 3 of Identifying the pattern of immune related cells and genes in the peripheral blood of ischemic stroke

description: Additional file 3. The expression matrices of total 1082 DEGs in training set.
DOI: 10.6084/m9.figshare.12756655.v1
title: Additional file 3 of Identifying the pattern of immune related cells and genes in the peripheral blood of ischemic stroke

description: Additional file 3. The expression matrices of total 1082 DEGs in training set.
DOI: 10.6084/m9.figshare.12756470
title: Protein.txt

description: This is the 189 Protein expression of 11128 patients from TCGA.
DOI: 10.6084/m9.figshare.12756473
title: mRNA.mat

description: The mRNA expression of 11128 caner patients from TCGA