cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12497900.v2
title: Complete plastome sequence of Aspidopterys obcordata (Malpighiaceae), a traditional Dai medicinal plant from Xishuangbanna, Yunnan, China

description: Complete plastome sequence of Aspidopterys obcordata (Malpighiaceae), a traditional Dai medicinal plant from Xishuangbanna, Yunnan, China
DOI: 10.6084/m9.figshare.12497900.v1
title: Complete plastome sequence of Aspidopterys obcordata (Malpighiaceae), a traditional Dai medicinal plant from Xishuangbanna, Yunnan, China

description: Complete plastome sequence of Aspidopterys obcordata (Malpighiaceae), a traditional Dai medicinal plant from Xishuangbanna, Yunnan, China
DOI: 10.6084/m9.figshare.12497765
title: MLL-AF4 GRN project

description: These datasets are from the generation, and subsequent analysis, of a gene regulatory network (GRN) model of MLL-AF4 leukemia in the SEM cell line. This GRN model was created through integrating MLL-AF4 knockdown nascent RNA-seq, MLL-AF4 ChIP-seq, and an underlying TF network from the FANTOM consortium using the R package GeneNetworkBuilder.<br>
DOI: 10.21954/ou.rd.12497711
title: North Rupununi Orthomosaic_B12_12 02 2020

description: 5 cm resolution orthomap (GeoTiff format) of twelfth block of Bonuni Creek, North Rupununi, 2km x 2km quadrant. Drone survey was carried out on the 12th of February 2020.
DOI: 10.6084/m9.figshare.12497732
title: Metadata record for: ERA5-based global meteorological wildfire danger maps

description: This dataset contains key characteristics about the data described in the Data Descriptor ERA5-based global meteorological wildfire danger maps. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12497765.v1
title: MLL-AF4 GRN project

description: These datasets are from the generation, and subsequent analysis, of a gene regulatory network (GRN) model of MLL-AF4 leukemia in the SEM cell line. This GRN model was created through integrating MLL-AF4 knockdown nascent RNA-seq, MLL-AF4 ChIP-seq, and an underlying TF network from the FANTOM consortium using the R package GeneNetworkBuilder.<br>
DOI: 10.6084/m9.figshare.12497732.v1
title: Metadata record for: ERA5-based global meteorological wildfire danger maps

description: This dataset contains key characteristics about the data described in the Data Descriptor ERA5-based global meteorological wildfire danger maps. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.21954/ou.rd.12497711.v1
title: North Rupununi Orthomosaic_B12_12 02 2020

description: 5 cm resolution orthomap (GeoTiff format) of twelfth block of Bonuni Creek, North Rupununi, 2km x 2km quadrant. Drone survey was carried out on the 12th of February 2020.
DOI: 10.6084/m9.figshare.12497546
title: Students perceive skills learned in pre-clerkship PBL valuable in core clinical rotations

description: <b>Purpose:</b> Problem-based learning (PBL) is an instructional method widely used by medical educators that promotes an environment in which students effectively learn the foundational knowledge and skills that are prerequisites for graduation. This study evaluated medical students’ perceptions of the helpfulness of skills acquired in PBL to core clerkship rotations. <b>Methods:</b> A 25-item survey was designed to assess students’ perceptions of skills learned in PBL that were helpful on core clerkships and transferable to the clinical setting. A random sample of students with at least 8 months of clerkship experience were invited to complete the survey. <b>Results:</b> Of 68 students, 35 (52%) returned questionnaires. Results suggest a clustering of themes based on their perceived value. Skills learned in PBL that students rated most highly as helpful or very helpful during core clinical rotations include: comfort discussing concepts, identifying key information, presentation skills, interpersonal skills, diagnostic thinking, finding information, self-awareness, and organizing information. Other items rated highly included: forming questions, time management, primary literature (engaging with published original research articles), and leadership. The skills acquired in PBL were associated with multiple competency domains. <b>Conclusions:</b> Although conditions of the pre-clerkship curriculum are substantially different from the learning environment of clerkship rotations, skills learned in PBL are perceived as applicable to authentic clinical training.
DOI: 10.6084/m9.figshare.12497546.v1
title: Students perceive skills learned in pre-clerkship PBL valuable in core clinical rotations

description: <b>Purpose:</b> Problem-based learning (PBL) is an instructional method widely used by medical educators that promotes an environment in which students effectively learn the foundational knowledge and skills that are prerequisites for graduation. This study evaluated medical students’ perceptions of the helpfulness of skills acquired in PBL to core clerkship rotations. <b>Methods:</b> A 25-item survey was designed to assess students’ perceptions of skills learned in PBL that were helpful on core clerkships and transferable to the clinical setting. A random sample of students with at least 8 months of clerkship experience were invited to complete the survey. <b>Results:</b> Of 68 students, 35 (52%) returned questionnaires. Results suggest a clustering of themes based on their perceived value. Skills learned in PBL that students rated most highly as helpful or very helpful during core clinical rotations include: comfort discussing concepts, identifying key information, presentation skills, interpersonal skills, diagnostic thinking, finding information, self-awareness, and organizing information. Other items rated highly included: forming questions, time management, primary literature (engaging with published original research articles), and leadership. The skills acquired in PBL were associated with multiple competency domains. <b>Conclusions:</b> Although conditions of the pre-clerkship curriculum are substantially different from the learning environment of clerkship rotations, skills learned in PBL are perceived as applicable to authentic clinical training.
DOI: 10.6084/m9.figshare.12497390
title: Resultados de los análisis estadísticos "t de Student"

description: Resultados de los análisis estadísticos "t de Student"
DOI: 10.6084/m9.figshare.12497390.v1
title: Resultados de los análisis estadísticos "t de Student"

description: Resultados de los análisis estadísticos "t de Student"
DOI: 10.6084/m9.figshare.12497144
title: Dataset for manuscript "Polyester urethane functionalizable through maleimide side-chains and cross-linkable by polylactide stereocomplexes"

description: Institute of Biomaterial Science, Helmholtz-Zentrum Geesthacht, 14513 Teltow, Germany.<br>Institute of Chemistry, University of Potsdam, 14476 Potsdam, Germany.<br><br>The dataset includes raw data for the manuscript “Polyester urethane functionalizable through maleimide side-chains and crosslinkable by polylactide stereocomplexes”, DOI: 10.1016/j.eurpolymj.2020.109916<br><br>Sample IDs:<br>2: PH-15-032<br>3: PH-15-033<br>4 (MID): PH-15-045<br>PLLA-diol: PH-15-042<br>PEU: MZ-15-017<br>PDLA: VI-PDLA-73<br>PEU + L-cysteine: PH-15-056<br><br>
DOI: 10.6084/m9.figshare.12497144.v1
title: Dataset for manuscript "Polyester urethane functionalizable through maleimide side-chains and cross-linkable by polylactide stereocomplexes"

description: Institute of Biomaterial Science, Helmholtz-Zentrum Geesthacht, 14513 Teltow, Germany.<br>Institute of Chemistry, University of Potsdam, 14476 Potsdam, Germany.<br><br>The dataset includes raw data for the manuscript “Polyester urethane functionalizable through maleimide side-chains and crosslinkable by polylactide stereocomplexes”, DOI: 10.1016/j.eurpolymj.2020.109916<br><br>Sample IDs:<br>2: PH-15-032<br>3: PH-15-033<br>4 (MID): PH-15-045<br>PLLA-diol: PH-15-042<br>PEU: MZ-15-017<br>PDLA: VI-PDLA-73<br>PEU + L-cysteine: PH-15-056<br><br>
DOI: 10.6084/m9.figshare.12497177.v1
title: Network Analysis of Internal Migration in Croatia

description: Network analysis indicators and models applied to the case of internal migration in Croatia, application results.
DOI: 10.6084/m9.figshare.12497177.v2
title: Network Analysis of Internal Migration in Croatia - Supplementary Material

description: Supplementary material for the manuscript: "Network Analysis of Internal Migration in Croatia". Contains network analysis node and structural indicators, and link development model data and calculations.<br>
DOI: 10.6084/m9.figshare.12497000
title: Los portavoces oficiales y la estrategia audiovisual en la crisis de la Covid-19 en España

description: The covid-19 crisis has destabilized the world communication system, blurring some of the borders of disciplines such as political communication and corporate communication, or implanting new phenomena that until now had not been known as the competition of television day time versus prime time. This article begins with the study of the role that official spokespersons have played in the Government's crisis communication strategy. In this context, the changes in the television strategyare also studied; the predominance of political communication over corporate communication, and what has been the role of government spokespersons as influencers.
DOI: 10.6084/m9.figshare.12497177.v3
title: Network Analysis of Internal Migration in Croatia - Supplementary Material

description: Supplementary material for the manuscript: "Network Analysis of Internal Migration in Croatia". Contains network analysis node and structural indicators, and link development model data and calculations.<br>
DOI: 10.6084/m9.figshare.12496925
title: PNAS MS#2020-01966R_data.xlsx

description: Characterization of congenic mice that naturally over-express the vitamin d receptor <br>
DOI: 10.6084/m9.figshare.12497000.v1
title: Los portavoces oficiales y la estrategia audiovisual en la crisis de la Covid-19 en España

description: The covid-19 crisis has destabilized the world communication system, blurring some of the borders of disciplines such as political communication and corporate communication, or implanting new phenomena that until now had not been known as the competition of television day time versus prime time. This article begins with the study of the role that official spokespersons have played in the Government's crisis communication strategy. In this context, the changes in the television strategyare also studied; the predominance of political communication over corporate communication, and what has been the role of government spokespersons as influencers.
DOI: 10.6084/m9.figshare.12496895
title: SM masterfile 29-04-2020 anonymized.xlsx

description: Please contact me for more information on methods
DOI: 10.6084/m9.figshare.12496895.v1
title: SM masterfile 29-04-2020 anonymized.xlsx

description: Please contact me for more information on methods
DOI: 10.6084/m9.figshare.12496880
title: Investigation of novel indole-based HIV-1 protease inhibitors using virtual screening and text mining

description: Human immunodeficiency virus type 1 protease (HIV-1 PR) inhibitors have been used as possible therapeutic agents for HIV-1 infection in clinical study. Most of the HIV therapy-related problems usually stem from long-term opioid usage. The rapid development of drug-resistant variants limits the long-term effectiveness of current inhibitors as therapeutic agents. In addition, different side effects were reported. Further drug development is required to design new compounds which have similar efficacy as the drugs currently used in HIV infection but without having undesirable side effects. Indole derivatives were considered as one of the effective HIV inhibitors. Indole is an important fragment used in many FDAapproved medicines and used in various diseases. For this purpose, in this study the molecules containing” indole” keywords in their fragments are taken from the Specs-SC database which includes 212520 small molecules. 5194 molecules that include indole keywords are selected. These selected molecules are then screened against HIV-1 PR target protein using molecular docking simulations. Then the molecules are ranked according to the their docking scores. Top docking poses of ten ligands and FDA approved drug Amprenavir are subjected to 100<b> </b>ns Molecular Dynamics (MD) simulations. Thus, by using combination of text mining and integrated molecular modeling approaches, we identified novel indole-based hits against HIV-1 PR. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.12496841
title: An Efficient Method for Predicting Soil Thickness in Large-scale Area Based on Cluster Sampling

description: After fast mean shift (FMS) clustering, the whole research area was divided to 10 subareas, so the new samples can characterize the geographical features of each subarea were collected through field investigations. Because of our limited human and material resources, it is difficult to conduct a mass of sampling in each subarea. In order to make the most of our limited resources, we need to conduct reasonable field sampling strategy. For the first two large subareas, we collected 70 field samples respectively, and labeled them as the first sample set and the second sample set that will be used to build their own GWR models for extend prediction of unobserved points in each area, i.e. local extension prediction; while the remaining 8 small subareas took moderate amounts of samples according to their size, if one subarea owns the size of raster points more than 5000, 16 samples will be collected from it, otherwise, take 12 samples. In this way, a total of 112 samples are put together as the third sample set, and the third GWR model is constructed to achieve the global extension prediction of 8 subareas. In addition, three sample sets were divided into training set and test set, respectively. For the first two sample sets, the ratio of sample size of training set and test set are all 5:2, i.e. training set contains 50 samples, test set has 20 samples. Because of the third sample set composed of samples from 8 subareas, we divided the samples of each subarea into training set and test set according to the ratio of 3:1. In the other word, the sample number of training set from third to tenth subarea is 12, 9, 9, 12, 9, 12, 12 and 9 respectively, and 84 training sample in total; and the sample number of test set from eight subarea is 4, 3, 3, 4, 3, 4, 4 and 3 respectively, a total of 28 samples.
DOI: 10.6084/m9.figshare.12496880.v1
title: Investigation of novel indole-based HIV-1 protease inhibitors using virtual screening and text mining

description: Human immunodeficiency virus type 1 protease (HIV-1 PR) inhibitors have been used as possible therapeutic agents for HIV-1 infection in clinical study. Most of the HIV therapy-related problems usually stem from long-term opioid usage. The rapid development of drug-resistant variants limits the long-term effectiveness of current inhibitors as therapeutic agents. In addition, different side effects were reported. Further drug development is required to design new compounds which have similar efficacy as the drugs currently used in HIV infection but without having undesirable side effects. Indole derivatives were considered as one of the effective HIV inhibitors. Indole is an important fragment used in many FDAapproved medicines and used in various diseases. For this purpose, in this study the molecules containing” indole” keywords in their fragments are taken from the Specs-SC database which includes 212520 small molecules. 5194 molecules that include indole keywords are selected. These selected molecules are then screened against HIV-1 PR target protein using molecular docking simulations. Then the molecules are ranked according to the their docking scores. Top docking poses of ten ligands and FDA approved drug Amprenavir are subjected to 100<b> </b>ns Molecular Dynamics (MD) simulations. Thus, by using combination of text mining and integrated molecular modeling approaches, we identified novel indole-based hits against HIV-1 PR. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.12496802
title: Extended Data Figure 5

description: Flow data for Extended Data Figure 5
DOI: 10.6084/m9.figshare.12496799
title: Figure 2

description: Flow data for Figure 2
DOI: 10.6084/m9.figshare.12496841.v1
title: An Efficient Method for Predicting Soil Thickness in Large-scale Area Based on Cluster Sampling

description: After fast mean shift (FMS) clustering, the whole research area was divided to 10 subareas, so the new samples can characterize the geographical features of each subarea were collected through field investigations. Because of our limited human and material resources, it is difficult to conduct a mass of sampling in each subarea. In order to make the most of our limited resources, we need to conduct reasonable field sampling strategy. For the first two large subareas, we collected 70 field samples respectively, and labeled them as the first sample set and the second sample set that will be used to build their own GWR models for extend prediction of unobserved points in each area, i.e. local extension prediction; while the remaining 8 small subareas took moderate amounts of samples according to their size, if one subarea owns the size of raster points more than 5000, 16 samples will be collected from it, otherwise, take 12 samples. In this way, a total of 112 samples are put together as the third sample set, and the third GWR model is constructed to achieve the global extension prediction of 8 subareas. In addition, three sample sets were divided into training set and test set, respectively. For the first two sample sets, the ratio of sample size of training set and test set are all 5:2, i.e. training set contains 50 samples, test set has 20 samples. Because of the third sample set composed of samples from 8 subareas, we divided the samples of each subarea into training set and test set according to the ratio of 3:1. In the other word, the sample number of training set from third to tenth subarea is 12, 9, 9, 12, 9, 12, 12 and 9 respectively, and 84 training sample in total; and the sample number of test set from eight subarea is 4, 3, 3, 4, 3, 4, 4 and 3 respectively, a total of 28 samples.
DOI: 10.6084/m9.figshare.12496790
title: Dataset: Procalcitonin as a marker of etiology in adults admitted to the emergency department for lower respiratory tract infection during SARS-CoV2 pandemic

description: Our Dataset was conceived to investigate on whether procalcitonin is a clear marker of bacterial infection in patients presenting with CAP at the emergency ward during the SARS-CoV-2 pandemic.
DOI: 10.6084/m9.figshare.12496793
title: Extended Data Figure 4

description: Data for Extended Data Figure 4
DOI: 10.6084/m9.figshare.12496799.v1
title: Figure 2

description: Flow data for Figure 2
DOI: 10.6084/m9.figshare.12496802.v1
title: Extended Data Figure 5

description: Flow data for Extended Data Figure 5
DOI: 10.6084/m9.figshare.12496793.v1
title: Extended Data Figure 4

description: Data for Extended Data Figure 4
DOI: 10.6084/m9.figshare.12496772
title: Extended data Figure 6

description: Extended Data Figure 6
DOI: 10.6084/m9.figshare.12496772.v1
title: Extended data Figure 6

description: Extended Data Figure 6
DOI: 10.6084/m9.figshare.12496778.v1
title: Accuracies of genomic prediction for growth traits at weaning and yearling in Yak

description: Upload files for genomic selection in ashidan yak population. Four growth traits were measured in two stages. <br>
DOI: 10.6084/m9.figshare.12496556
title: Characterization and removal of biofouling from reverse osmosis membranes (ROMs) from a desalination plant in Northern Chile, using <i>Alteromonas</i> sp. Ni1-LEM supernatant

description: Biofouling control in reverse osmosis membranes (ROMs) is challenging due to the high cost of treatments, and reduction in the life of ROMs. This study characterizes the biofouling in the ROMs from a desalination plant and reports its effective removal using the supernatant obtained from <i>Alteromonas</i> sp. strain Ni1-LEM. The characterization of the bacterial community revealed that the most abundant taxa in ROMs were the genera <i>Fulvivirga</i> and <i>Pseudoalteromonas</i>, and unclassified species of the families Flavobacteriaceae and Sphingomonadaceae. This bacterial community significantly decreased upon treatment with the supernatant from <i>Alteromonas</i> sp. Ni1-LEM, resulting in the prevalence of the genus <i>Pseudoalteromonas</i>. Furthermore, this bacterial supernatant significantly inhibited cell adhesion of seven benthic microalgae isolated from ROMs as well as promoting cell detachment of the existing microbial biofilms. The study showed that the extracellular supernatant modified the conformation of extracellular polymeric substances (EPS) in the biofouling of ROMs without any biocidal effects.
DOI: 10.6084/m9.figshare.12496523
title: Supplementary Material for: Left Atrial Volume Index Predicts New-Onset Atrial Fibrillation and Stroke Recurrence in Patients with Embolic Stroke of Undetermined Source

description: <b><i>Introduction:</i></b> It is unclear which surrogate of atrial cardiopathy best predicts the risk of developing a recurrent ischemic stroke in embolic stroke of undetermined source (ESUS). Left atrial diameter (LAD) and LAD index (LADi) are often used as markers of left atrial enlargement in current ESUS research, but left atrial volume index (LAVi) has been found to be a better predictor of cardiovascular outcomes in other patient populations. <b><i>Objective:</i></b> We aim to compare the performance of LAVi, LAD, and LADi in predicting the development of new-onset atrial fibrillation (AF) and stroke recurrence in ESUS. <b><i>Methods:</i></b> Between October 2014 and October 2017, consecutive patients diagnosed with ESUS were followed for new-onset AF, ischemic stroke recurrence, and a composite outcome of occult AF and stroke recurrence. LAVi and LADi were measured by transthoracic echocardiogram; “high” LAVi was defined as ≥35 mL/m<sup>2</sup> in accordance with American Society of Echocardiography guidelines. <b><i>Results:</i></b> 185 ischemic stroke patients with ESUS were recruited and followed for a median duration of 2.1 years. Increased LAVi was associated with new-onset AF detection (aOR 1.08; 95% CI 1.03–1.14; <i>p</i> = 0.003) and stroke recurrence (aOR 1.05; 95% CI 1.01–1.10; <i>p</i> = 0.026). Patients with “high” LAVi had a higher likelihood of developing a composite of AF detection and stroke recurrence (HR 3.45; 95% CI 1.55–7.67; <i>p</i> = 0.002). No significant association was observed between LADi and either occult AF or stroke recurrence. <b><i>Conclusions:</i></b> LAVi is associated with new-onset AF and stroke recurrence in ESUS patients and may be a better surrogate of atrial cardiopathy.