cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/rhwa-wr75
title: North-West Shelf ROMS ocean model - his files (2010)

description: Hourly output of the NWS ROMS ocean model. Used to study circulation and marine heatwave developement in the Pilbara region.
DOI: 10.6084/m9.figshare.13332659
title: System- and Software-level Architecting Harmonization Practices for Systems-of-Systems - Replication Package

description: Replication package of the study "System- and Software-level Architecting Harmonization Practices for Systems-of-Systems - An exploratory case study on a long-running large-scale scientific instrument", accepted at the 18th IEEE international conference on Software Architecture (ICSA 2021).
DOI: 10.6084/m9.figshare.13655486.v1
title: Bitácoras de la blogosfera española en Technorati, julio 2005

description: Link data for the top 500 Spanish blog in Technorati, scraped in Juli 2005<br>
DOI: 10.6084/m9.figshare.13655462
title: Supplementary Material for: Metabolic Syndrome in Offspring of Parents with Metabolic Syndrome: A Meta-Analysis

description: <b><i>Background:</i></b> The metabolic syndrome (MetS) represents a clustering of risk factors for cardiovascular diseases that includes abdominal obesity, hypertension, dyslipidemia, and insulin resistance. <b><i>Objectives:</i></b> The objective of this study was to reassess the parent-offspring association of MetS since the available findings are still controversial. <b><i>Methods:</i></b> The Cochrane Library, PubMed, Embase, and Web of Science databases were searched to identify relevant articles. All studies comparing MetS status between the offspring of parents with MetS and offspring of parents without MetS were included in the analysis. <b><i>Results:</i></b> A total of 9 studies met the inclusion criteria and they were analyzed. Offspring of at least 1 parent with MetS had a higher risk of MetS (OR 3.88, 95% CI 2.58–5.83, <i>p</i> &lt; 0.001). Sons and daughters of fathers with MetS both had a higher risk of MetS (OR 2.31, 95% CI 1.70–3.12, <i>p</i> &lt; 0.001, and OR 1.73, 95% CI 1.37–2.18, <i>p</i> &lt; 0.001, respectively). Sons and daughters of mothers with MetS both had a higher risk of MetS (OR 1.95, 95% CI 1.37–2.76, <i>p</i> = 0.0002, and OR 1.91, 95% CI 1.54–2.35, <i>p</i> &lt; 0.001, respectively). <b><i>Conclusion:</i></b> This meta-analysis showed that there is a higher risk of MetS in the offspring of parents with MetS. However, there was no differential association of MetS according to gender and/or age of the offspring.
DOI: 10.5281/zenodo.4475349
title: Data from 'Planktivores as trophic drivers of global coral reef fish diversity patterns'

description: Datasets and scripts generated in the paper 'Planktivores as trophic drivers of global coral reef fish diversity patterns', published in PNAS. More details can be found in the README file.
DOI: 10.5281/zenodo.4475348
title: Data from 'Planktivores as trophic drivers of global coral reef fish diversity patterns'

description: Datasets and scripts generated in the paper 'Planktivores as trophic drivers of global coral reef fish diversity patterns', published in PNAS. More details can be found in the README file.
DOI: 10.5517/ccdc.csd.cc24r716
title: CCDC 1988527: Experimental Crystal Structure Determination

description: Related Article: Manish Kumar, Gyanendra Kumar, Dhanraj T. Masram|2020|New J.Chem.|44|8595|doi:10.1039/D0NJ01192D
DOI: 10.5281/zenodo.4471805
title: Electrical impedance dataset of a thorax shaped tank

description: This is a collection of Electrical Impedance Tomography measurements of a thorax cross-section shaped tank with 16 electrodes. These are published primarily for reproducibility and therefore the documentation is incomplete. CREDITS:<br> The measurements were carried out in 2009 by Aku Seppänen (University of Eastern Finland), Antti Nissinen (Aalto University), Stratos Staboulis (Aalto University) and Nuutti Hyvönen (Aalto University). If you have questions about the data, please contact Nuutti Hyvönen (firstname.lastname@aalto.fi).<br> For information about the measurement device, please refer to:<br> Kourunen, J., Savolainen, T., Lehikoinen, A., Vauhkonen, M., and Heikkinen, L. M. - Suitability of a PXI platform for an electrical impedance tomography system. Meas. Sci. Technol. 20 (2009), 015503. DOI: 10.1088/0957-0233/20/1/015503<br> <br> For a general overview of the measurement setup, please refer to section 4.3 on:<br> Hyvönen, N., and Mustonen, L. - Smoothened electrode model. SIAM J. Appl. Math. 77 (2017), 2250–2271. DOI 10.1137/17M1124292<br>
DOI: 10.25326/1
title: SEV06-CLD : A MODIS-like SEVIRI cloud products dataset

description: The SEV06-CLD dataset provides cloud properties derived from the SEVIRI instrument series using algorithms that have been historically developped for the processing of MODIS data. SEV06-CLD uses MODIS-like algorithms for cloud optical and microphysical property retrievals, and a modified GOES-R Algorithm Working Group (AWG) algorithm for cloud-top temperature and pressure. Cloud masking is obtained from the Météo France Satellite Application Facility for supporting NoWCasting (SAFNWC) software package. The SEV06-CLD datasets share a common retrieval core with the Collection 6 MODIS Level-2 cloud product (product names MOD06_L2 and MYD06_L2 for MODIS Terra and Aqua, respectively). The core cloud optical property code is equivalent to that used in the MODIS Adaptive Processing System (MODAPS) production version. Optical properties, pixel-level uncertainties and QA assignments are provided in the same exact fashion and via the same code base as the archived MODIS product. Existing user MOD06 optical property visualization and analysis codes are largely expected to work with SEV06-CLD files.
DOI: 10.5281/zenodo.4475373
title: Electrical impedance dataset of a thorax shaped tank

description: This is a collection of Electrical Impedance Tomography measurements of a thorax cross-section shaped tank with 16 electrodes. These are published primarily for reproducibility and therefore the documentation is incomplete. CREDITS:<br> The measurements were carried out in 2009 by Aku Seppänen (University of Eastern Finland), Antti Nissinen (Aalto University), Stratos Staboulis (Aalto University) and Nuutti Hyvönen (Aalto University). If you have questions about the data, please contact Nuutti Hyvönen (firstname.lastname@aalto.fi).<br> For information about the measurement device, please refer to:<br> Kourunen, J., Savolainen, T., Lehikoinen, A., Vauhkonen, M., and Heikkinen, L. M. - Suitability of a PXI platform for an electrical impedance tomography system. Meas. Sci. Technol. 20 (2009), 015503. DOI: 10.1088/0957-0233/20/1/015503<br> <br> For a general overview of the measurement setup, please refer to section 4.3 on:<br> Hyvönen, N., and Mustonen, L. - Smoothened electrode model. SIAM J. Appl. Math. 77 (2017), 2250–2271. DOI 10.1137/17M1124292<br>
DOI: 10.6084/m9.figshare.13655522
title: Supplementary Material for: Arterial Intimal Fibrosis in Reperfusion Biopsy Correlates with Graft Function after Kidney Transplant

description: <b><i>Introduction:</i></b> Alterations to the procurement biopsy are one of the main reasons that kidneys are not suitable for transplant and are discarded. The literature on procurement and reperfusion biopsy is inconsistent and heterogeneous. The objective of this study is to describe the correlation of the different histological characteristics detected by the procurement and reperfusion biopsies in relation to graft function. <b><i>Methods:</i></b> This is a retrospective cohort study of deceased donor kidney transplants performed from 2013 to 2017. All of the different histological components of procurement and reperfusion biopsies were analyzed with nonparametric tests and multivariate regressions. Graft function was expressed as glomerular filtration rate (GFR) at 1, 3, 6, and 12 months after transplant. All tests were based on a level of significance of α = 0.05. <b><i>Results:</i></b> A comparison of procurement and reperfusion biopsies revealed that 60.4% of the grafts exhibited more arterial intimal fibrosis and 55.6% more arteriolar hyalinosis in the reperfusion biopsy than in the procurement biopsy. Arterial intimal fibrosis in reperfusion biopsy correlated with GFR at all time points, and it was the only histological characteristic of the reperfusion biopsy that remained significant in multivariate analysis. Glomerulosclerosis in the procurement biopsy correlated with graft function and remained significant in multivariate analysis, but only at 6 months. Arterial intimal fibrosis in the reperfusion biopsy is significantly associated with graft function independently of clinical characteristics. <b><i>Conclusion:</i></b> Our study highlights the importance of arterial intimal fibrosis in predicting kidney function after transplant. Because arterial intimal fibrosis is a chronic change not related to ischemia-reperfusion injury, the differences between the 2 biopsies may be due to the biopsy technique. In order to increase the prognostic accuracy of the procurement biopsy, the technique should be improved to better evaluate the vasculature.
DOI: 10.6084/m9.figshare.13655522.v1
title: Supplementary Material for: Arterial Intimal Fibrosis in Reperfusion Biopsy Correlates with Graft Function after Kidney Transplant

description: <b><i>Introduction:</i></b> Alterations to the procurement biopsy are one of the main reasons that kidneys are not suitable for transplant and are discarded. The literature on procurement and reperfusion biopsy is inconsistent and heterogeneous. The objective of this study is to describe the correlation of the different histological characteristics detected by the procurement and reperfusion biopsies in relation to graft function. <b><i>Methods:</i></b> This is a retrospective cohort study of deceased donor kidney transplants performed from 2013 to 2017. All of the different histological components of procurement and reperfusion biopsies were analyzed with nonparametric tests and multivariate regressions. Graft function was expressed as glomerular filtration rate (GFR) at 1, 3, 6, and 12 months after transplant. All tests were based on a level of significance of α = 0.05. <b><i>Results:</i></b> A comparison of procurement and reperfusion biopsies revealed that 60.4% of the grafts exhibited more arterial intimal fibrosis and 55.6% more arteriolar hyalinosis in the reperfusion biopsy than in the procurement biopsy. Arterial intimal fibrosis in reperfusion biopsy correlated with GFR at all time points, and it was the only histological characteristic of the reperfusion biopsy that remained significant in multivariate analysis. Glomerulosclerosis in the procurement biopsy correlated with graft function and remained significant in multivariate analysis, but only at 6 months. Arterial intimal fibrosis in the reperfusion biopsy is significantly associated with graft function independently of clinical characteristics. <b><i>Conclusion:</i></b> Our study highlights the importance of arterial intimal fibrosis in predicting kidney function after transplant. Because arterial intimal fibrosis is a chronic change not related to ischemia-reperfusion injury, the differences between the 2 biopsies may be due to the biopsy technique. In order to increase the prognostic accuracy of the procurement biopsy, the technique should be improved to better evaluate the vasculature.
DOI: 10.6084/m9.figshare.13655414
title: data.rar

description: a data set for predictions of the CDGnet model<br>
DOI: 10.6084/m9.figshare.13655414.v2
title: data.rar

description: a data set for predictions of the CDGnet model<br>
DOI: 10.6084/m9.figshare.13655414.v1
title: data.rar

description: a data set for predictions of the CDGnet model<br>
DOI: 10.5281/zenodo.3963882
title: Commonalities and differences in predictive neural processing of discrete vs continuous action feedback

description: Dataset relative to the following publication: Schmitter, C.V., Steinsträter, O., Kircher, T., van Kemenade, B.M., Straube, B. (2021). Commonalities and differences in predictive neural processing of discrete vs continuous action feedback. <em>NeuroImage.</em> DOI: 10.1016/j.neuroimage.2021.117745 Details can be found in the readme file.
DOI: 10.5281/zenodo.3963881
title: Commonalities and differences in predictive neural processing of discrete vs continuous action feedback

description: Dataset relative to the following publication: Schmitter, C.V., Steinsträter, O., Kircher, T., van Kemenade, B.M., Straube, B. (2021). Commonalities and differences in predictive neural processing of discrete vs continuous action feedback. <em>NeuroImage.</em> DOI: 10.1016/j.neuroimage.2021.117745 Details can be found in the readme file.
DOI: 10.5281/zenodo.4475417
title: Electrical impedance dataset of a thorax shaped tank

description: This is a collection of Electrical Impedance Tomography measurements of a thorax cross-section shaped tank with 16 electrodes. These are published primarily for reproducibility and therefore the documentation is incomplete. CREDITS:<br> The measurements were carried out in 2012 by Aku Seppänen (University of Eastern Finland), Stratos Staboulis (Aalto University) and Nuutti Hyvönen (Aalto University). If you have questions about the data, please contact Nuutti Hyvönen (firstname.lastname@aalto.fi).<br> For information about the measurement device, please refer to:<br> Kourunen, J., Savolainen, T., Lehikoinen, A., Vauhkonen, M., and Heikkinen, L. M. - Suitability of a PXI platform for an electrical impedance tomography system. Meas. Sci. Technol. 20 (2009), 015503. DOI: 10.1088/0957-0233/20/1/015503<br> <br> For a general overview of the measurement setup, please refer to section 4.3 on:<br> Hyvönen, N., and Mustonen, L. - Smoothened electrode model. SIAM J. Appl. Math. 77 (2017), 2250–2271. DOI 10.1137/17M1124292<br>
DOI: 10.5281/zenodo.4471804
title: Electrical impedance dataset of a thorax shaped tank

description: This is a collection of Electrical Impedance Tomography measurements of a thorax cross-section shaped tank with 16 electrodes. These are published primarily for reproducibility and therefore the documentation is incomplete. CREDITS:<br> The measurements were carried out in 2012 by Aku Seppänen (University of Eastern Finland), Stratos Staboulis (Aalto University) and Nuutti Hyvönen (Aalto University). If you have questions about the data, please contact Nuutti Hyvönen (firstname.lastname@aalto.fi).<br> For information about the measurement device, please refer to:<br> Kourunen, J., Savolainen, T., Lehikoinen, A., Vauhkonen, M., and Heikkinen, L. M. - Suitability of a PXI platform for an electrical impedance tomography system. Meas. Sci. Technol. 20 (2009), 015503. DOI: 10.1088/0957-0233/20/1/015503<br> <br> For a general overview of the measurement setup, please refer to section 4.3 on:<br> Hyvönen, N., and Mustonen, L. - Smoothened electrode model. SIAM J. Appl. Math. 77 (2017), 2250–2271. DOI 10.1137/17M1124292<br>
DOI: 10.6084/m9.figshare.13273283.v1
title: Nanogranites in the high-pressure pelitic granulite of the Eastern Himalaya

description: (1)Major and trace element compositions of major minerals(e.g. garnet) in the studied pelitic granulite; (2) LA-ICP-MS U-Pb isotopic data and trace element compositions of zircon
DOI: 10.6084/m9.figshare.13100552
title: Metadata record for: An Indo-Pacific coral spawning database

description: This dataset contains key characteristics about the data described in the Data Descriptor An Indo-Pacific coral spawning database. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.13100552.v1
title: Metadata record for: An Indo-Pacific coral spawning database

description: This dataset contains key characteristics about the data described in the Data Descriptor An Indo-Pacific coral spawning database. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.5281/zenodo.4382019
title: Variability in pulmonary diffusing capacity in heart failure

description: Raw datA of the paper Variability in pulmonary diffusing capacity in heart failure
DOI: 10.5281/zenodo.4382018
title: Variability in pulmonary diffusing capacity in heart failure

description: Raw datA of the paper Variability in pulmonary diffusing capacity in heart failure
DOI: 10.6084/m9.figshare.13655534
title: Supplementary Material for: Clinical Implementation of In-House Developed MR-Based Patient-Specific 3D Models of Liver Anatomy

description: Knowledge of patient-specific liver anatomy is key to patient safety during major hepatobiliary surgery. Three-dimensional (3D) models of patient-specific liver anatomy based on diagnostic MRI images can provide essential vascular and biliary anatomical insight during surgery. However, a method for generating these is not yet publicly available. This paper describes how these 3D models of the liver can be generated using open source software, and then subsequently integrated into a sterile surgical environment. The most common image quality aspects that degrade the quality of the 3D models as well possible ways of eliminating these are also discussed. Per patient, a single diagnostic multiphase MRI scan with hepatospecific contrast agent was used for automated segmentation of liver contour, arterial, portal, and venous anatomy, and the biliary tree. Subsequently, lesions were delineated manually. The resulting interactive 3D model could be accessed during surgery on a sterile covered tablet. Up to now, such models have been used in 335 surgical procedures. Their use simplified the surgical treatment of patients with a high number of liver metastases and contributed to the localization of vanished lesions in cases of a radiological complete response to neoadjuvant treatment. They facilitated perioperative verification of the relationship of tumors and the surrounding vascular and biliary anatomy, and eased decision-making before and during surgery.
DOI: 10.5281/zenodo.4315176
title: Data related to the article "N-Acetyl-Cysteine Regenerates Albumin Cys34 by a Thiol-Disulfide Breaking Mechanism: An Explanation of Its Extracellular Antioxidant Activity"

description: This record contains raw data related to the article “N-Acetyl-Cysteine Regenerates Albumin Cys34 by a Thiol-Disulfide Breaking Mechanism: An Explanation of Its Extracellular Antioxidant Activity” <strong>Abstract</strong> In the present paper, the extracellular antioxidant activity of N-acetyl-cysteine (NAC) is explained by considering its ability to regenerate the free form of albumin Cys34 by breaking the disulfide bond of the cysteinylated form (HSA-Cys). NAC’s capability to regenerate albumin Cys34 (HSA-SH) was studied by MS intact protein analysis in human plasma and in a concentration range of NAC easily achievable after oral and i.v. administration (5–50 µg/mL). NAC dose-dependently broke the HSA-Cys bond to form the dimer NAC-Cys thus regenerating Cys34, whose reduced state was maintained for at least 120 min. Cys was faster in restoring Cys34, according to the reaction constant<br> determined with the glutathione disulfide (GSSG) reaction, but after 60 min the mixed disulfide HSA-Cys turned back due to the reaction of the dimer Cys-Cys with Cys34. The explanation for the different rate exchanges between Cys-Cys and Cys-NAC with Cys34 was given by molecular modelling studies. Finally, the Cys34 regenerating effect of NAC was related to its ability to improve the total antioxidant capacity of plasma (TRAP assay). The results well indicate that NAC greatly increases the plasma antioxidant activity and this effect is not reached by a direct effect but through the regenerating effect of Cys34.
description: This work was supported by the Italian Ministry of Health, Rome, Italy (Ricerca Corrente 2017 BIO 18, ID 2631209) and by a research contract (CTE_NAZPR19GALDI_02) between University of Milan and Zambon Company S.p.A. (Bresso, Milan, Italy).
DOI: 10.5281/zenodo.4315175
title: Data related to the article "N-Acetyl-Cysteine Regenerates Albumin Cys34 by a Thiol-Disulfide Breaking Mechanism: An Explanation of Its Extracellular Antioxidant Activity"

description: This record contains raw data related to the article “N-Acetyl-Cysteine Regenerates Albumin Cys34 by a Thiol-Disulfide Breaking Mechanism: An Explanation of Its Extracellular Antioxidant Activity” <strong>Abstract</strong> In the present paper, the extracellular antioxidant activity of N-acetyl-cysteine (NAC) is explained by considering its ability to regenerate the free form of albumin Cys34 by breaking the disulfide bond of the cysteinylated form (HSA-Cys). NAC’s capability to regenerate albumin Cys34 (HSA-SH) was studied by MS intact protein analysis in human plasma and in a concentration range of NAC easily achievable after oral and i.v. administration (5–50 µg/mL). NAC dose-dependently broke the HSA-Cys bond to form the dimer NAC-Cys thus regenerating Cys34, whose reduced state was maintained for at least 120 min. Cys was faster in restoring Cys34, according to the reaction constant<br> determined with the glutathione disulfide (GSSG) reaction, but after 60 min the mixed disulfide HSA-Cys turned back due to the reaction of the dimer Cys-Cys with Cys34. The explanation for the different rate exchanges between Cys-Cys and Cys-NAC with Cys34 was given by molecular modelling studies. Finally, the Cys34 regenerating effect of NAC was related to its ability to improve the total antioxidant capacity of plasma (TRAP assay). The results well indicate that NAC greatly increases the plasma antioxidant activity and this effect is not reached by a direct effect but through the regenerating effect of Cys34.
description: This work was supported by the Italian Ministry of Health, Rome, Italy (Ricerca Corrente 2017 BIO 18, ID 2631209) and by a research contract (CTE_NAZPR19GALDI_02) between University of Milan and Zambon Company S.p.A. (Bresso, Milan, Italy).
DOI: 10.5281/zenodo.4292505
title: Dataset related to the article "S-Thiolation targets albumin in heart failure"

description: This record contains raw data related to the article "S-Thiolation targets albumin in heart failure" <strong>Abstract. </strong>Human serum albumin (HSA) is associated with several physiological functions, such as maintaining oncotic pressure and microvascular integrity, among others. It also represents the major and predominant antioxidant in plasma due to the presence of the Cys34 sulfhydryl group. In this study we assessed qualitative and quantitative changes in HSA in patients with heart failure (HF) and their relationship with the severity of the disease. We detected by means of mass spectrometry a global decrease of HSA content in the plasma of HF patients in respect to control subjects, a significant increase of thio-HSA with a concomitant decrease in the reduced form of albumin. Cysteine and, at lesser extent homocysteine, represent the most abundant thiol bound to HSA. A strong inverse correlation was also observed between cysteine-HSA and peak VO<sub>2</sub>/Kg, an index of oxygen consumption associated with HF severity. Moreover, in HL-1 cardiomyocytes incubated with H<sub>2</sub>O<sub>2</sub>, we showed a significant decrease of cell viability in cells treated with thio-HSA in respect to restored native-HSA. In conclusion, we found for the first time that S-thiolation of albumin is increased in the plasma of HF patients and induced changes in the structure and antioxidant function of HSA, likely contributing to HF progression.
description: This work was supported by the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement number 675132 and by the Italian Ministry of Health, Rome, Italy (Ricerca Corrente RC 2019 MPP1A ID 2755301).