cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/vz9ai0
title: Global Register of Introduced and Invasive Species - Guinea

description: The Global Register of Introduced and Invasive Species (GRIIS) presents validated and verified national checklists of introduced (alien) and invasive alien species at the country, territory, and associated island level. Checklists are living entities, especially for biological invasions given the growing nature of the problem. GRIIS checklists are based on a published methodology and supported by the Integrated Publishing Tool that jointly enable ongoing improvements and updates to expand their taxonomic coverage and completeness. Phase 1 of the project focused on developing validated and verified checklists of countries that are Party to the Convention on Biological Diversity (CBD). Phase 2 aimed to achieve global coverage including non-party countries and all overseas territories of countries, e.g. those of the Netherlands, France, and the United Kingdom. All kingdoms of organisms occurring in all environments and systems are covered. Checklists are reviewed and verified by networks of country or species experts. Verified checklists/ species records, as well as those under review, are presented on the online GRIIS website (www.griis.org) in addition to being published through the GBIF Integrated Publishing Tool.
DOI: 10.25919/5f767ce286ee1
title: Parkes observations for project P456 semester 2020APRS_08

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. The PPTA is the oldest of three international pulsar timing groups. We have the smallest telescope and the smallest group, but the best measurements and the best results. Our bound on the strength of the incoherent gravitational wave background is the only bound which significantly constrains theoretical models. We have maintained our leading position because: we have the southern sky; we have a small but well-focussed group; we have the best-calibrated receivers; and we have been able to observe with an almost regular cadence of 15 to 20 days over a wide bandwidth. With this proposal we aim to maintain our pre-eminent position in the field. Unlike most observing proposals, this is a continuing proposal for which the observations will continue to improve bounds on ultra-low-frequency gravitational waves until they are finally detected. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected we will want to continue observations in support of the nascent field of gravitational wave astronomy!
DOI: 10.25919/5f767d67e13d3
title: Parkes observations for project PX500 semester 2020APRS_08

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.15468/h3kb9f
title: Global Register of Introduced and Invasive Species - Guinea-Bissau

description: The Global Register of Introduced and Invasive Species (GRIIS) presents validated and verified national checklists of introduced (alien) and invasive alien species at the country, territory, and associated island level. Checklists are living entities, especially for biological invasions given the growing nature of the problem. GRIIS checklists are based on a published methodology and supported by the Integrated Publishing Tool that jointly enable ongoing improvements and updates to expand their taxonomic coverage and completeness. Phase 1 of the project focused on developing validated and verified checklists of countries that are Party to the Convention on Biological Diversity (CBD). Phase 2 aimed to achieve global coverage including non-party countries and all overseas territories of countries, e.g. those of the Netherlands, France, and the United Kingdom. All kingdoms of organisms occurring in all environments and systems are covered. Checklists are reviewed and verified by networks of country or species experts. Verified checklists/ species records, as well as those under review, are presented on the online GRIIS website (www.griis.org) in addition to being published through the GBIF Integrated Publishing Tool.
DOI: 10.6084/m9.figshare.13040651
title: ITS1clean_data.rar

description: ITS1 region amplicons
DOI: 10.6084/m9.figshare.13040651.v1
title: ITS1clean_data.rar

description: ITS1 region amplicons
DOI: 10.15468/jfa01x
title: Global Register of Introduced and Invasive Species - Guyana

description: The Global Register of Introduced and Invasive Species (GRIIS) presents validated and verified national checklists of introduced (alien) and invasive alien species at the country, territory, and associated island level. Checklists are living entities, especially for biological invasions given the growing nature of the problem. GRIIS checklists are based on a published methodology and supported by the Integrated Publishing Tool that jointly enable ongoing improvements and updates to expand their taxonomic coverage and completeness. Phase 1 of the project focused on developing validated and verified checklists of countries that are Party to the Convention on Biological Diversity (CBD). Phase 2 aimed to achieve global coverage including non-party countries and all overseas territories of countries, e.g. those of the Netherlands, France, and the United Kingdom. All kingdoms of organisms occurring in all environments and systems are covered. Checklists are reviewed and verified by networks of country or species experts. Verified checklists/ species records, as well as those under review, are presented on the online GRIIS website (www.griis.org) in addition to being published through the GBIF Integrated Publishing Tool.
DOI: 10.6084/m9.figshare.12894689
title: VC Data 2019-2020.xlsx

description: A total of 100 participants completed <i>VISION COACH</i> testing with the FF120, red light only, reaction time test, on speed one. Based on 96 participants, the provided raw data of demographics and reaction time in seconds allowed calculation of descriptive statistics, including mean reaction time and standard deviation for each age range and biological sex category. Screening forms and informed consent were collected on paper prior to administration. Ethics approval for the project was obtained from the University Institutional Review Board (Project Number:1448512-3).
DOI: 10.6084/m9.figshare.12894689.v2
title: VC Data 2019-2020.xlsx

description: A total of 100 participants completed <i>VISION COACH</i> testing with the FF120, red light only, reaction time test, on speed one. Based on 96 participants, the provided raw data of demographics and reaction time in seconds allowed calculation of descriptive statistics, including mean reaction time and standard deviation for each age range and biological sex category. Screening forms and informed consent were collected on paper prior to administration. Ethics approval for the project was obtained from the University Institutional Review Board (Project Number:1448512-3).
DOI: 10.5281/zenodo.4062664
title: Empirical shapes for the publication "Modifications of the K-Profile parameterization with nondiffusive fluxes for wave effects"

description: This dataset contains data for the reproduction of the empirical shape functions G_l and g_s introduced in the publication "Modifications of the K-Profile parameterization with nondiffusive fluxes for wave effects".
DOI: 10.5517/ccdc.csd.cc25n00w
title: CCDC 2015217: Experimental Crystal Structure Determination

description: Related Article: Yohei Haketa, Mika Miyasue, Yoichi Kobayashi, Ryuma Sato, Yasuteru Shigeta, Nobuhiro Yasuda, Naoto Tamai, Hiromitsu Maeda|2020|J.Am.Chem.Soc.|142|16420|doi:10.1021/jacs.0c07751
DOI: 10.5517/ccdc.csd.cc25nzf8
title: CCDC 2016160: Experimental Crystal Structure Determination

description: Related Article: Simone Bertini, Martin Albrecht|2020|Organometallics|39|3413|doi:10.1021/acs.organomet.0c00495
DOI: 10.5517/ccdc.csd.cc25nzg9
title: CCDC 2016161: Experimental Crystal Structure Determination

description: Related Article: Simone Bertini, Martin Albrecht|2020|Organometallics|39|3413|doi:10.1021/acs.organomet.0c00495
DOI: 10.5517/ccdc.csd.cc25nzhb
title: CCDC 2016162: Experimental Crystal Structure Determination

description: Related Article: Simone Bertini, Martin Albrecht|2020|Organometallics|39|3413|doi:10.1021/acs.organomet.0c00495
DOI: 10.5517/ccdc.csd.cc25nzjc
title: CCDC 2016163: Experimental Crystal Structure Determination

description: Related Article: Simone Bertini, Martin Albrecht|2020|Organometallics|39|3413|doi:10.1021/acs.organomet.0c00495
DOI: 10.5517/ccdc.csd.cc25nzmg
title: CCDC 2016166: Experimental Crystal Structure Determination

description: Related Article: Simone Bertini, Martin Albrecht|2020|Organometallics|39|3413|doi:10.1021/acs.organomet.0c00495
DOI: 10.5517/ccdc.csd.cc25nznh
title: CCDC 2016167: Experimental Crystal Structure Determination

description: Related Article: Simone Bertini, Martin Albrecht|2020|Organometallics|39|3413|doi:10.1021/acs.organomet.0c00495
DOI: 10.5517/ccdc.csd.cc25nzpj
title: CCDC 2016168: Experimental Crystal Structure Determination

description: Related Article: Simone Bertini, Martin Albrecht|2020|Organometallics|39|3413|doi:10.1021/acs.organomet.0c00495
DOI: 10.5517/ccdc.csd.cc25nzqk
title: CCDC 2016169: Experimental Crystal Structure Determination

description: Related Article: Simone Bertini, Martin Albrecht|2020|Organometallics|39|3413|doi:10.1021/acs.organomet.0c00495
DOI: 10.5517/ccdc.csd.cc25nzrl
title: CCDC 2016170: Experimental Crystal Structure Determination

description: Related Article: Simone Bertini, Martin Albrecht|2020|Organometallics|39|3413|doi:10.1021/acs.organomet.0c00495
DOI: 10.5517/ccdc.csd.cc25qjbs
title: CCDC 2017645: Experimental Crystal Structure Determination

description: Related Article: Simone Bertini, Martin Albrecht|2020|Organometallics|39|3413|doi:10.1021/acs.organomet.0c00495
DOI: 10.6084/m9.figshare.13040708
title: An Evaluation of the 2035 WHO End TB Strategy in 40 High Burden Countries

description: <b>Table 1:</b> Results of linear model fit to TB incidence data for all 40 countries, 2000-2018. <b>Table 2:</b> Assessment of End TB targets in 25 countries without high HIV burden. <b>Table 3:</b> Assessment of End TB targets in 15 countries with high HIV burden, separated by HIV infection.<br>
DOI: 10.6084/m9.figshare.13040708.v1
title: An Evaluation of the 2035 WHO End TB Strategy in 40 High Burden Countries

description: <b>Table 1:</b> Results of linear model fit to TB incidence data for all 40 countries, 2000-2018. <b>Table 2:</b> Assessment of End TB targets in 25 countries without high HIV burden. <b>Table 3:</b> Assessment of End TB targets in 15 countries with high HIV burden, separated by HIV infection.<br>
DOI: 10.18434/m32271
title: Calculated Diffusivities for Water Isotopologues in Nitrogen, Oxygen, and Air

description: Values are computed for the dilute-gas diffusivity of water isotopologues in N2, O2, and their mixture at a composition representing air, for standard conditions of 101.325 kPa and water mole fraction approaching zero. Calculations employ state-of-the-art intermolecular potentials and classical trajectory calculations as described in the paper by R. Hellmann and A.H. Harvey, "First-Principles Diffusivity Ratios for Kinetic Isotope Fractionation of Water in Air", submitted to Geophysical Research Letters in July 2020. Separate files are given for the diffusivities of H2O, HDO (where D is deuterium), and the 17-O and 18-O substitutions of H2O.
DOI: 10.5281/zenodo.4062711
title: Global Biotic Interactions: Taxon Graph Patches

description: Global Biotic Interactions: Taxon Graph Patch 20201001-01 2020-10-01 Abstract / Introduction Plazi.org indexes existing taxonomic treatments and make them machine readable. This patch adds links to Plazi taxonomic treatments (e.g., http://treatment.plazi.org/id/873F269E609FF24F40BEA54C44321A15), their original publications (e.g., http://dx.doi.org/10.3897/BDJ.3.e6313) and the associated taxon concept (e.g., http://taxon-concept.plazi.org/id/Animalia/Lethe_appalachia_Chermock_1947). Methods Nomer v0.1.17 [1] is used in provided create_patch.sh script to<br> link names of taxonMap.tsv.gz in GloBI Taxon Graph v0.3.25 [2] to<br> Plazi treatments and taxon concepts in Plazi Treatment RDF Archive [3]. To apply the patch, run the "patch" program against the original<br> taxonCache/taxonMap files with the .patch files on any linux-y system. Patch files taxonMap.tsv.patch.gz and taxonCache.tsv.patch.gz were<br> created using: create_patch.sh in period 2020-10-01/2020-10-02 . Result/Discussion The resulting patch adds Plazi links to GloBI Taxon Graph v0.3.25 . References [1] Poelen, Jorrit H. (2020). globalbioticinteractions/nomer<br> (Version 0.1.17). Zenodo. http://doi.org/10.5281/zenodo.4062515 [2] Poelen, Jorrit H. (2020). Global Biotic Interactions: Taxon Graph<br> (Version 0.3.25) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.3378125 [3] Plazi. (2020). Plazi Treatment RDF Archive (Version 0.1)<br> [Data set]. Zenodo. http://doi.org/10.5281/zenodo.4062537
DOI: 10.25345/c56f64
title: MassIVE MSV000086222 - Proteomic analysis of phage Ochi17-M. smegmatis interaction
title: The potential for mycobacteriophages to serve as a therapeutic agent in the treatment of the deadly pathogen, Mycobacterium tuberculosi has led to renewed interest in the study of mycobacteriophage-mycobacteria interactions. Mycobacteriophages are phages that attack mycobacteria. Not much is known, however, about the molecular interactions of both species, especially at the translational level. To better understand this interaction, we applied label-free quantitative proteomics using the model host, Mycobacteria smegmatis, infected with the phage, Ochi17 during the lytic stage of infection (~3.5 h). A total of 2,188 proteins were identified, with 299 displaying significant upregulation and 135 significant downregulation. Homologous recombination and processes of macromolecular synthesis such as amino acid metabolism, DNA replication, transcription, translation, and vitamin metabolism) were significantly upregulated. Fatty acid and lipid metabolism were also primary targets of phage Ochi17. This study provides the first global proteome investigation of any mycobacteriophage-infected mycobacterium with respect to the host mycobacterium response and may contribute in the development of mycobacteriophages as antimicrobial therapies that can overcome various defense strategies employed by host mycobacteria.
DOI: 10.25345/c5b47n
title: MassIVE MSV000086223 - GNPS - Paenibacillus spp with coffee extracts 96h
title: Cultures of Paenibacillus spp (Zengler Lab UCSD) on Nutrient Broth and BHI enriched with coffee extracts. Extracts obtained by SPE C18 100% MeOH. LC-MS/MS performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 um C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Impact Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source. Data was acquired in positive ion mode.
DOI: 10.25345/c52n2f
title: MassIVE MSV000086224 - Comparative evaluation of proteomic methods for extracellular matrix characterization
title: Identification and evaluation of proteins in the extracellular matrix (ECM) has proved challenging due to the insolubility of the bulk of ECM proteins in traditional proteomic extraction buffers. Multiple ECM-focused proteomic workflows have been developed over the past 10 years. These methods rely on decellularization followed by chaotrope extraction and ultimately enzymatic or chemical digestion. To date, there has not been a side-by-side comparison of all current methods on uniform, complex tissue samples. Herein, we present an evaluation of ECM-specific methods alongside several single-shot methods for tissue analysis. We provide recommendations for method selection based on ECM protein identification and sequence coverage as well as the ease and precision of the given methods.
DOI: 10.25345/c5xz1x
title: MassIVE MSV000086225 - GNPS - Paenibacillus spp with coffee extracts RAW
title: Cultures of Paenibacillus spp (Zengler Lab UCSD) on Nutrient Broth and BHI enriched with coffee extracts. Extracts obtained by SPE C18 100% MeOH. LC-MS/MS performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 um C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Impact Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source. Data was acquired in positive ion mode.
DOI: 10.5066/f7b56gxm
title: Field efficacy trials with sylvatic plague vaccine

description: These data were collected as part of a field trial to test the efficacy of a sylvatic plague vaccine. Treatment and control sites were selected randomly from the available sites at each location. Site pairs were a minimum of 20 acres, (with a few exceptions). Prairie dog trapping took place a minimum of two weeks post-baiting and trapping procedures were approved by the NWHC Animal Care and Use Committee as well as individual states as required.
DOI: 10.6084/m9.figshare.13040783
title: The result of tandem repeats finder for Miscanthus lutarioriparius

description: The result file generated by Tandem Repeats Finder Program.The version of trf is 4.09 The parameters: 2 7 7 80 10 50 500
DOI: 10.6084/m9.figshare.13040783.v1
title: The result of tandem repeats finder for Miscanthus lutarioriparius

description: The result file generated by Tandem Repeats Finder Program.The version of trf is 4.09 The parameters: 2 7 7 80 10 50 500
DOI: 10.6084/m9.figshare.13040636
title: Antibiotic Treatment Response in Chronic Lyme Disease Data

description: This data set pertains to the following open-access peer-reviewed article:<br><br>Johnson, L.B.; Shapiro, M.; Vendrow, J.; Haddock, J.; Stricker, R.B.; Needell, D. Antibiotic treatment response in chronic Lyme disease: Why do some patients improve while others do not? Healthcare 2020, (Pending publication).
DOI: 10.6084/m9.figshare.13040636.v1
title: Antibiotic Treatment Response in Chronic Lyme Disease Data

description: This data set pertains to the following open-access peer-reviewed article:<br><br>Johnson, L.B.; Shapiro, M.; Vendrow, J.; Haddock, J.; Stricker, R.B.; Needell, D. Antibiotic treatment response in chronic Lyme disease: Why do some patients improve while others do not? Healthcare 2020, (Pending publication).
DOI: 10.6084/m9.figshare.12016983.v4
title: samples

description: <b>tblASVsamples.csv: The day of collection of 12,758 stool microbiome samples for 1,870 patients and the stool consistency</b>SampleID: stool sample identifierPatientID: deidentified identifier of a patientTimepoint: deidentified day of sample collectionConsistency: stool consistencyAccession: the NCBI SRA accession number for the sequencing data corresponding to this sampleDayRelativeToNearestHCT: day of sample collection relative to nearest day of bone marrow transplant<br>
DOI: 10.6084/m9.figshare.12016989.v3
title: counts

description: <b>tblASVcounts_human_filter.csv: A melted table containing</b><b>the sequence counts of each ASV detected in 12,707 stool samples</b> SampleID: stool sample identifier ASV: identifier of the ASVs Count: number of reads<br> <b>tblqpcr.csv: 16S rRNA qPCR data for 3,418 stool samples</b> SampleID: stool sample identifier qPCR16S: 16S copies per gram of stool sample
DOI: 10.6084/m9.figshare.12016992.v1
title: taxonomy

description: <b>tblASVtaxonomy_silva_v4v5_filter.csv: </b><b>taxonomic information for 17,865 ASVs</b><b> </b>ASV: identifier of the ASVsSequence: V4-V5 region of the 16S rRNA gene sequencesKingdom, Phylum, Class, Order, Family, Genus: taxonomic classificationConfidenceKingdom, ConfidencePhylum, ConfidenceClass, ConfidenceOrder, ConfidenceFamily, ConfidenceGenus: confidence assignment at each taxonomic levelHexColor: HEX color code assigned to each ASVColorOrder: auxiliary integers used to group and sort the orders of ASVs in stacked barplot
DOI: 10.6084/m9.figshare.12016983.v5
title: samples

description: <b>tblASVsamples.csv: The day of collection of 12,546 stool microbiome samples for 1,870 patients and the stool consistency</b>SampleID: stool sample identifierPatientID: deidentified identifier of a patientTimepoint: deidentified day of sample collectionConsistency: stool consistencyAccession: the NCBI SRA accession number for the sequencing data corresponding to this sampleDayRelativeToNearestHCT: day of sample collection relative to nearest day of bone marrow transplant<br>
DOI: 10.6084/m9.figshare.13040786
title: Development of a Telerehab Evaluation Tool - Repository Data

description: This is the dataset for the Development of a Feedback Evaluation Tool for the Assessment of Telerehabilitation as a Teaching-Learning Tool for Medical Students study.
DOI: 10.6084/m9.figshare.13040786.v1
title: Development of a Telerehab Evaluation Tool - Repository Data

description: This is the dataset for the Development of a Feedback Evaluation Tool for the Assessment of Telerehabilitation as a Teaching-Learning Tool for Medical Students study.
DOI: 10.7931/1dd0-e877
title: Long-term biodiversity trajectories for pest managed ecological restorations
DOI: 10.6084/m9.figshare.13040756
title: Bacteria 16S V4 and fungi Its amplification sequencing

description: Relationship between microbial communities with different nitrogen application levels and microbial carbon and nitrogen utilization efficiency
DOI: 10.6084/m9.figshare.13040765
title: SWOO3D-related data

description: RTTOV_SHDOM.nc: data used to reproduce Figure 2.<br><br>OUTPUT.tar.gz: data used to reproduce Figures 3 and 4. The file stores the reflectance simulated by SHDOM-1D, SHDOM-3D, and SWOO3D for the trainning, validation, and testing datasets.<br>CASE.tar.gz: data used to reproduce Figure 5.<br>
DOI: 10.6084/m9.figshare.13040765.v1
title: SWOO3D-related data

description: RTTOV_SHDOM.nc: data used to reproduce Figure 2.<br><br>OUTPUT.tar.gz: data used to reproduce Figures 3 and 4. The file stores the reflectance simulated by SHDOM-1D, SHDOM-3D, and SWOO3D for the trainning, validation, and testing datasets.<br>CASE.tar.gz: data used to reproduce Figure 5.<br>
DOI: 10.14457/cu.the.2005.671
title: การพัฒนาโปรแกรมการฝึก เพื่อปรับปรุงจุดเริ่มล้าในนักกีฬาฟุตบอล /
DOI: 10.5519/qd.b72qrhx4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.d99kqhtd
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.13019417.v3
title: Data from: Laboratory evaluation of Orthocentrus brachycerus (Hymenoptera: Ichneumonidae), as a potential biological control agent in mushroom cultivation

description: The data supporting the results of Fig. 2, 3, S1, S2 and S3 (Mukai & Kitajima) in submitted paper for Journal of Applied Entomology.
DOI: 10.6084/m9.figshare.13040863.v1
title: Additional file 2 of Maternal perceptions of the quality of Care in the Free Maternal Care Policy in sub-Sahara Africa: a systematic scoping review

description: Additional file 2: Supplementary file 2. Mix Method Quality Appraisal Tool.
DOI: 10.6084/m9.figshare.13040859
title: Additional file 1 of Potential therapeutic target identification in the novel 2019 coronavirus: insight from homology modeling and blind docking study

description: Additional file 1. Supplementary information to this article can be found online at https://www.rcsb.org/structure/6M2N