cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.xsj3tx9fw
title: Numerical simulation of supercell thunderstorms (at 50 meter resolution) associated with above anvil cirrus plumes

description: Four-dimensional data from high-resolution simulations (50 meter grid
 spacing) of supercell thunderstorms conducted on the Frontera
 supercomputer are contained in this archive. Output from two simulations
 is included, named "Strong" and "Weak". In the Strong
 simulation, data from parcel trajectories is also included.  The
 four-dimensional (time, and three dimensions of space) data and parcel
 data is saved in Network Common Data Format (NetCDF), version 4, an
 open-source self-describing scientific data format commonly used
 in the atmospheric sciences. 
description: Data was generated numerically using the Bryan Cloud Model 1
 (CM1; https://www2.mmm.ucar.edu/people/bryan/cm1/) on the Frontera
 supercomputer in LOFS (http://lofs.io) format. It was then converted to
 individual NetCDF4 files. The 4D data was further compressed using the
 open-source lossy floating-point ZFP compression algorithm in order to
 reduce its size for sharing. See
 README-Supercell-AACP-50m.txt for a detailed description of the
 data.
description: NetCDF is an open-source format built upon HDF5, also open
 source. Both self-describing scientific data formats are used widely in
 the sciences. ZFP is an open-source lossy floating-point compression
 algorithm. ZFP will need to be built on the user's analysis machine
 in order to properly uncompress the data back to 32 bit floating point
 data.  See README-Supercell-AACP-50m.txt for a detailed
 description of the data.
DOI: 10.5061/dryad.k3j9kd57s
title: Continuous glucose monitoring in cystic fibrosis: glycemic relationships, clinical correlations, and implications for CFRD diagnosis

description: Context: The clinical utility and implications of continuous glucose
 monitoring (CGM) in cystic fibrosis (CF) are unclear. Objective: We
 examined the correlation between CGM measures and clinical outcomes in
 adults with CF, investigated the relationship between hemoglobin A1c
 (HbA1c) and CGM-derived average glucose (AG), and explored CGM measures
 that distinguish cystic fibrosis–related diabetes (CFRD) from normal and
 abnormal glucose tolerance. Methods: This prospective observational study
 included 77 adults with CF who had CGM and HbA1c measured at 2 to 3 time
 points 3 months apart. Results: Thirty-one of the 77 participants met
 American Diabetes Association–recommended diagnostic criteria for CFRD by
 oral glucose tolerance testing and/or HbA1c. In all participants,
 CGM measures of hyperglycemia and glycemic variability correlated with
 nutritional status and pulmonary function. HbA1c was correlated with AG
 (R2 = 0.71, P &lt; 0.001), with no significant difference between this
 regression line and that previously established in type 1 and type 2
 diabetes and healthy volunteers. Cutoffs of 17.5% time &gt; 140 mg/dL
 and 3.4% time &gt; 180 mg/dL had sensitivities of 87% and
 90%, respectively, and specificities of 95%, for identifying
 CFRD. Area under the curve and percent of participants correctly
 classified with CFRD were higher for AG, SD, % time &gt; 140, &gt;
 180, and &gt; 250 mg/dL than for HbA1c. Conclusion: CGM measures of
 hyperglycemia and glycemic variability are superior to HbA1c in
 distinguishing those with and without CFRD. CGM-derived AG is strongly
 correlated with HbA1c in adults with CF, with a similar relationship to
 other diabetes populations. Future studies are needed to investigate CGM
 as a diagnostic and screening tool for CFRD.
DOI: 10.5061/dryad.xksn02vgh
title: Data for pith width, leaf size, and twig thickness of trees and shrubs

description: Premise of the study: As an extension of E. J. H. Corner’s Rule
 that twig diameter increases with leaf size, we hypothesized that pith
 width also increases with leaf size. The benefit to the plant from the
 proposed relationship is that pith is a low-cost tissue that reduces the
 metabolic cost of large diameter twig production. 
 Methods: Leaf sizes and cross-sectional areas of bark, xylem, and
 pith of 81 species of trees and shrubs growing in Gainesville, Florida
 were measured and compared with standardized major axis regressions of
 pairwise species trait values and phylogenetically independent contrasts.
 Key results: Pith area increases with leaf size with or without
 accounting for phylogenetic relationships. In agreement with Corner’s
 rule, overall twig diameter as well as bark and wood thickness also
 increase with leaf size. Thicker twigs showed more variation in relative
 pith, wood, and bark  cross-sectional areas compared to
 thinner twigs. Conclusions:  Investments in pith, a
 tissue of low density found in the centers of twigs, provides a low cost
 way to increase twig circumference and thereby space for attachment of
 large leaves while increasing the overall second moment of area of twigs
 (I), which increases their ability to biomechanically support large
 leaves.
DOI: 10.5061/dryad.63xsj3v2s
title: Effect of a single application of Scenar for pain relief in patients with low back and neck pain

description: We aimed to demonstrate the antalgic effectiveness of ScenarTM (Self
 Controlled Electro Neuro Adaptative Regulation) in patients experiencing
 low back and neck pain. Sixty patients were included and equally assigned
 by randomization to a Scenar-On group and to a Scenar-Off group (sham
 group). All patients received a 20 minutes application of ScenarTM of the
 painful area. Pain at rest and at movement, and sensation of stiffness
 were assessed using a numeric rating scale at baseline, right after the
 session and 24 hours following the session. Patients' characteristics
 at entry were similar between groups. Pain at rest decreased after the
 session in both groups (from 7.5 [4.2] to 5.0 [3.5]) in the Scenar-Off
 group, p= 0.0001, from 6.5 [3.0] to 4.0 [4.0]) in the Scenar-On group
 p&lt;0.0001). Similar results were observed at mobilization but
 sensation of stiffness was not modified. Such beneficial results do not
 last until the next day. No undesirables major  effects were
 noticed. Our study does not support the fact that one Scenar session
 improves better low back and neck pain than a sham session.
description: eCRF
DOI: 10.5061/dryad.qbzkh18hg
title: Network topology and patch connectivity affect dynamics in experimental and model metapopulations

description: Biological populations are rarely isolated in space and instead interact
 with others via dispersal in metapopulations. Theory predicts that network
 connectivity patterns can have critical effects on network robustness, as
 certain topologies, such as scale-free networks, are more tolerant to
 disturbances than other patterns. However, at present, experimental
 evidence of how these topologies affect population dynamics in a
 metapopulation framework is lacking. We used experimental metapopulations
 of the aquatic protist Paramecium tetraurelia to determine how network
 topology influences occupation patterns. We created metapopulations
 engineered to be comparable in linkage density, but differing in their
 degree distribution. We compared random networks to scale-free networks by
 evaluating local population occupancy and abundance throughout 18-30
 protist generations. In parallel, we used simulations to explore
 differences in patch occupation patterns among topologies. Under one
 scenario, random metapopulations of P. tetraurelia reached higher
 abundance and higher occupancy (proportion of occupied patches) compared
 to scale-free systems in both experimental and simulated systems, while in
 the other both types of metapopulations performed similarly. Increasing
 patch degree (i.e., number of connections per patch) reduced the
 probability of extinction of local populations in both types of networks.
 We suggest the interaction between colonization/extinction rates and
 network topology alters the likelihood of rescue effects which results in
 differential patterns of occupancy and abundance in metapopulations.
DOI: 10.5061/dryad.4b8gthtd0
title: Data from: An unintended ecological benefit from human intervention: The enhancement of carbon storage in seagrass meadows

description: Human interventions have had unintended consequences for the diverse
 functions of various ecosystems. Hydrological interventions have the
 potential to alter vegetated habitats in coastal nearshore ecosystems, but
 little is known about the impacts on organic carbon (Corg )
 sequestration, which plays an important role in climate change mitigation.
 We examined the effects of past human interventions through artificial
 inlet opening in a lagoonal seagrass meadow. The sediment profiles of
 geological and biogeochemical characteristics were measured to obtain the
 historical changes in the lagoon environment and Corg accumulation rates.
 Isotopic and elemental signatures and diatom assemblages showed that the
 interventions increased the duration of seawater exchanges and the extent
 of the seagrass meadow. Corg accumulation rates increased more than
 1.9-fold after the intervention, resulting in additional Corg storage in
 the seagrass meadow during last 64 years. Synthesis and applications.
 Artificial opening of tidal inlet can potentially provide unintended
 ecological benefits, such as increased carbon sequestration in seagrass
 meadows. Hydrological interventions could be undertaken intentionally as a
 potential active intervention to sequester carbon, as well as control
 flood risk and provide other benefits to people in estuarine systems. Our
 results illustrate that physical factors such as improving salinity
 conditions and mineral particle supply have an impact on the feasibility
 of hydrological interventions for enhancing carbon sequestration. We
 propose that biogeochemical-physical coupled approach will help
 stakeholders to evaluate the ecological and social risks and synergies of
 implementing hydrological interventions.
description: These datasets were used in the article 'An unintended
 ecological benefit from human intervention:The enhancement of carbon
 storage in seagrass meadows'. The methods used for data collection
 and processing are described in this article.
DOI: 10.5061/dryad.59zw3r27p
title: Simulation results for ProSSE and datafile for case study

description: This repository includes the data files for the simulation study and the
 case study in the publication. The simulation_result.Rdata is an R data
 file that stores simulated data and results. The data is used to generate
 Figures 2-7, S1, and S2. The casestudy_trees.Rdata is an R data file that
 stores the posterior samples of the species tree of the Australian rainbow
 skinks and the model fitting on these trees. The data file is used to
 generate Figure 8.
description: simulation_result.Rdata includes the ML estimates of parameters
 to trees simulated under protracted speciation and extinction using ProSSE
 algorithm. Both tree simulation and model fitting are done using the
 ProSSE source code in R. casestudy_trees.Rdata includes
 the posterior samples of the species tree of the Australian rainbow skinks
 and the ML estimates of parameters to each tree. Model fitting are done
 using the ProSSE source code in R. The ProSSE source
 code is on Zenodo and is maintained at https://github.com/huaxia1985/ProSSE The R script to use the source code to generate and process the data is in the README.md file.
description: simulation_result.Rdata is used to generate Figures 2-7 and
 Figure S1 and S2, using R. The R script to generate the figures is in
 plotcode.R on Zenodo. casestudy_trees.Rdata is used to
 generate Figure 8, using R. The R script to summarize the case study
 results in the main text is in the README.md file.
DOI: 10.5061/dryad.9p8cz8wgr
title: Trivalvaria tomentosa (Annonaceae), a new species from Southeast Yunnan, China

description: Trivalvaria tomentosa sp. nov. is herein described from Yunnan Province in
 China. It is easily distinguished from all previously described
 Trivalvaria species by having tomentose twigs, petioles, abaxial surface
 of the leaves, sepals and petals. A detailed description for the new
 species, along with line drawings, photographs, as well as morphological
 comparisons with similar species, are provided. A phylogenetic analysis
 was conducted to confirm the placement of this new species within
 Trivalvaria.
description: Two accessions of <i>Trivalvaria tomentosa</i>
 (<i>Y. S.</i> <i>Chen PB-1048</i>, IBSC and
 <i>J.W. Li 5653</i>, HITBC) was sampled and integrated with
 data of 61 Annonaceae accessions from previous datasets (Xue et al. 2011,
 2018, 2020). The final dataset comprised a total of 63 accessions of
 Annonaceae with six chloroplast regions (<i>mat</i><i>K,
 ndhF, psbA-trnH, rbcL, trnL-F and ycf1</i>). The
 phylogenetic trees were reconstructed using Bayesian Inference (BI) and
 maximum likelihood (ML). Methods in phylogenetic reconstruction can be
 refer to Xue et al. (2018, 2020).
DOI: 10.5061/dryad.2ngf1vhnt
title: Data from: Trophic plasticity of mixotrophic corals under contrasting environments

description: 1. Mixotrophic organisms can derive nutrition from both auto- and
 heterotrophy, which allows them to use a variety of trophic pathways to
 sustain their metabolic demands under variable conditions. Therefore, when
 facing environmental change, these organisms are expected to demonstrate
 an intrinsic ability to acclimatise through trophic plasticity. 2.
 Scleractinian corals are ecologically important mixotrophs, but
 understanding their trophic plasticity has been impaired by an
 oversimplification toward inconsistent proxies of coral diet and
 overlooking intraspecific variability. 3. Here, we applied a Bayesian
 analysis of carbon and nitrogen stable isotope data to determine the
 trophic niches of six common species of scleractinian corals and their
 associated endosymbionts, and combined it with an unsupervised machine
 learning algorithm to identify trophic behaviours and strategies. 4. We
 found a variable amount of nutritional plasticity identified by different
 trophic behaviours within and between mixotrophic corals living under the
 same environmental conditions. Further, we observed changes in trophic
 plasticity across environmental conditions. Corals from variable
 environments had larger host and endosymbiont niches than corals from
 stable environments. In addition, deeper corals had niches indicating a
 greater degree of heterotrophy than shallow corals. Collectively, corals
 exhibited distinct trophic strategies by promoting trophic niche
 differentiation along the mixotrophic continuum and conspecific individual
 colonies displayed high trophic variation. 5. Our results provide a
 foundation to understand how mixotrophic organisms may adjust their
 nutrition in response to ongoing global environmental change and the
 consequential modification of benthic assemblages.
description: Full details on sample collection and analyses are available in
 the related manuscript (Sturaro et al., https://doi.org/10.1111/1365-2435.13924)
DOI: 10.5061/dryad.xksn02vgj
title: Data from: Phylogenetics support the description of a new Sichuanese species, Susanne’s Gentian, Gentiana susanneae (Gentianaceae)

description: The region of the Qinghai-Tibet Plateau hosts a remarkable biodiversity,
 including a plethora of endemics. There, the process of documenting
 biodiversity is still ongoing, and recently, an unusual plant of Gentiana
 section Frigida was discovered at Cuopu Lakes (Sichuan, China). Although
 Flora of China identified these specimens as G. algida based upon
 unmistakable traits (e.g. corolla colour and length, sessile flowers), it
 was obvious that the Sichuanese plants strongly differed morphologically
 from G. algida specimens from Siberia and North America. In order to
 clarify their relationships, we used an integrative approach,
 investigating not only morphological traits, but also phylogenetic
 relationships (based upon plastome and rDNA-cistron), as well as
 chloroplast structure. Whereas the rDNA-cistron phylogeny was poorly
 resolved, the plastome phylogeny was well supported in both Bayesian
 Inference and maximum likelihood analyses. Our findings indicate that the
 Cuopu Lakes samples of G. algida are morphologically and genetically
 distinct from those collected elsewhere, supporting the recognition of a
 new species, G. susanneae.
description: From the raw genomic data, we extracted the entire plastid
 genomes and rDNA cistron. We used Geneious
 Prime® 2019.0.4 (https://www.geneious.com) and mapped the reads to
 sequences of closely related species already available on GenBank (Favre
 et al. 2020). We aligned sequences in Geneious Prime using MAFFT v.7
 (Katoh and Standley 2013), including a few sequences available on Genbank.
 We inspected the resulting alignments and edited them wherever necessary
 in Geneious Prime® 2019.0.4. Only few ambiguous positions had to be
 removed, particularly in non-coding regions.
DOI: 10.5061/dryad.n02v6wwxq
title: Richness (species numbers) of butterflies in the Iberian Peninsula on a 50 x 50 km UTM grid

description: This file contains the on richness (species numbers) of
 butterflies from the Iberian Peninsula as they were used to model richness
 on contemporary climatic and non-climatic variables, then to
 forecast richness values to future climate scenarios. This is a text *.csv
 file.
description: This data set was extracted fro the authors data set
 "ATLAMAR", not published in this version. The data derive those
 used for a distribution atlas (García-Barros et al., 2004), updated by the
 authors to 2019. The data cover the presence of ca. 230 species of
 Papilionidae, Hesperiidae, Pieridae, Lycaenidae, Riodinidae and
 Nymphalidae in the continental territories of Spain and Portugal. It
 contains over 400.000 records. For estimates of completeness, one
 "record" was estimated as the unique combination of species,
 location, coordinates, date and observer/collector. The
 columns are: CELL (arbitrary cell number), LONdegrees (Longitude in
 decimal degrees of the MGRS cell centroid), LATdegrees (Latitude, same
 conditions as for the Longitude), Sobs (number of species presently
 recorded for that cell or square), SestC (richness as determined by
 accumulation curves), Sest (estimated richness as used as data input),
 FAIR (cells fitting the minimum of criteria required to fit the
 accumulation curve),WEIGHT (weight given to the cases to opertae using
 weighted regression), SELECTION_COMP&gt;80% (cells with values of
 completeness equal or higher than 80%, to be eventually selected as the
 training set of cases), VALIDATIONset (cells with high  [&gt;97%]
 value of Completeness, to be used as teh validation subset), COMPLETENESS%
 (percentage of cell completeness calculated as the ratio of
 observed/predicted richness as determined by the accumulation curves). The
 remaining are the standardised values of the explanatory variables
 selected in any of the models: Lon (Longitude), Lat (Latitude), DCOAST
 (minimum distance from the cell centroid to the coast), AREA (area of ecah
 cell actually occupied by land), TMINavg (average minimum temperature from
 WorldClim), TMINabs (absolute minimum temperature from WorldClim), TMAXavg
 (average maximum temperature from WorldClim), TMAXabs (maximum temperature
 from WorldClim), Tavg (average yearly temperature from WorldClim), Trange
 (temperature range, max-min from WorldClim), Pavg (mean yearly
 precipitation from WorlClim), Psummer (precipitation during the warmest
 quarter from WorldClim), Pran (range of precipitation in one year, max-min
 from WorldClim).
description: Missing values are coded as "NA". This apply only to
 the richness values estimated from the accumulation curves, for some cells
 that did not met the minimum criteria to allow this calculation in a
 reliable manner. For such cells, predicted values (present) and forecasts
 (future) were calculated.
DOI: 10.5061/dryad.hdr7sqvjf
title: Data on Tree Swallow (Tachycineta bicolor) body mass, wing, and headbill length

description: Body-size reductions are a pervasive response to climate change, and body
 size is a central trait linking together multiple axes of
 ecology, physiology and life history. Using a combination of three decades
 of data and controlled experiments, we show that male and female
 tree swallows (Tachycineta bicolor) have become smaller structurally,
 despite chicks growing larger under warmer nest temperatures and
 larger chicks being more likely to return as adults. We find that adult
 structural size trends are associated with warmer overwintering
 conditions, rather than the nestling period. Further, adult male body mass
 trends depend on climate conditions during spring migration; male
 breeding mass decreased by 4%, whereas female mass was
 unchanged. This may be explained by the demands of reproduction,
 as lighter females produce fewer offspring. This work highlights
 the complex interactions that shape relationships between traits
 and fitness, which will be critical for predicting
 evolutionary responses in future environments.
description: The data was collected as routine measurements on both
 reproductive age adult Tree Swallows and on chicks from 1986 - 2020. The
 specific information contained within is described in the
 readme.
DOI: 10.5061/dryad.cz8w9gj45
title: Hazelnut SSR database: genetic profiles of the accessions, list of synonyms, and true-to-type genotypes

description: Hazelnut (Corylus avellana L.) is one of the most important tree nut crops
 in Europe. Germplasm accessions are conserved in ex situ repositories,
 located in countries where hazelnut production occurs. In this work, we
 used ten simple sequence repeat (SSR) markers as the basis to establish a
 core collection representative of the hazelnut genetic diversity conserved
 in different European collections. A total of 480 accessions were used:
 430 from ex situ collections and 50 landraces maintained on-farm. SSR
 analysis identified 181 genotypes, that represented our whole hazelnut
 germplasm collection (WHGC). Four approaches (utilizing MSTRAT, Power
 Core, and Core Hunter’s single- and multi-strategy) based on the
 maximization (M) strategy were used to determine the best sampling method.
 Core Hunter’s multi-strategy, optimizing both allele coverage (Cv) and
 Cavalli-Sforza and Edwards (Dce) distance with equal weight, outperformed
 the others and was selected as the best approach. The final core
 collection (Cv-Dce30) comprised 30 entries (16.6% of genotypes). It
 recovered all SSR alleles and preserved parameter variations when compared
 to WHGC. Entries represented all six gene pools obtained from the
 population structure analysis of WHGC, further confirming the
 representativeness of Cv-Dce30. Our findings contribute towards improving
 the conservation and management of European hazelnut genetic resources and
 could be used to optimize future research by identifying a minimum number
 of accessions on which to focus.