cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11366009.v1
title: A new genus of Staphylinina and a review of major lineages (Staphylinidae: Staphylininae: Staphylinini)

description: Despite their familiarity to most naturalists, the large rove beetles of the subtribe Staphylinina are poorly understood systematically and have never been the subject of a focused phylogenetic analysis. Within a total evidence analytical framework, an unusual Staphylinina from China was demonstrated to be the sister group of <i>Ontholestes</i> and was described as <i>Lesonthotes vulneratus</i> Smetana and Brunke, gen. et sp. nov. Based on these results, <i>Ontholestes</i> was morphologically redefined and the Cingulatus group of species was established. The Neotropical genus <i>Leistotrophus</i> was resolved as a member of <i>Ontholestes</i>, within the latter clade but synonymy was avoided until molecular data are available for the former. <i>Ontholestes lowi</i> Rougemont, 2016 syn. nov. is proposed as a junior synonym of <i>Ontholestes borneensis</i> Cameron, 1942. We also confirmed the existence of and morphologically defined three major lineages within Staphylinina, of which two were previously based on molecular data only. This study builds on previous work by Smetana and Davies (2000) and lays the framework for more extensive analysis of the subtribe. Our results emphasize the continued value of morphological characters in a total evidence framework for resolving the systematics of charismatic but poorly explored groups. www.zoobank.org/urn:lsid:zoobank.org:pub:776F033D-4556-483C-8725-707E1B02C040
DOI: 10.6084/m9.figshare.11366027.v1
title: Untitled ItemLIFETIME RISK OF AUTOSOMAL RECESSIVE MITOCHONDRIAL DISORDERS CALCULATED FROM GENETIC DATABASES

description: <b>Background </b>Mitochondrial disorders are a group of rare diseases, caused by nuclear or mitochondrial DNA mutations. Their marked clinical and genetic heterogeneity as well as referral and ascertainment biases render phenotype-based prevalence estimations difficult. Here we calculated the lifetime risk of all known autosomal recessive mitochondrial disorders on basis of genetic data. <b>Methods</b> We queried the publicly available Genome Aggregation Database (gnomAD) and our in-house exome database to assess the allele frequency of disease-causing variants in genes associated with autosomal recessive mitochondrial disorders. Based on this, we estimated the lifetime risk of 249 autosomal recessive mitochondrial disorders. Three of these disorders and phenylketonuria (PKU) served as a proof of concept since calculations could be aligned with known birth prevalence data from newborn screening reports. <b>Findings </b>The estimated lifetime risks are very close to newborn screening data (where available), supporting the validity of the approach. For example, calculated lifetime risk of PKU (16·0/100,000) correlates well with known birth prevalence data (18·7/100,000). The combined estimated lifetime risk of 249 investigated mitochondrial disorders is 31·8 (20·9-50·6)/100,000 in our in-house database, 48·4 (40·3-58·5)/100,000 in the European gnomAD dataset, and 31·1 (26·7-36·3)/100,000 in the global gnomAD dataset. The disorders with the highest lifetime risk (&gt; 3 per 100,000) were, in all datasets, those caused by mutations in the <i>SPG7</i>, <i>ACADM</i>, <i>POLG</i> and <i>SLC22A5</i> genes. <b>Interpretation</b> We provide a population-genetic estimation on the lifetime risk of an entire class of monogenic disorders. Our findings reveal the substantial cumulative prevalence of autosomal recessive mitochondrial disorders, far above previous estimates. These data will be very important for assigning diagnostic a priori probabilities, and for resource allocation in therapy development, public health management and biomedical research.
DOI: 10.6084/m9.figshare.11366006.v1
title: A molecular phylogeny of carcinoecium-forming <i>Epizoanthus</i> (Hexacorallia: Zoantharia) from the Western Pacific Ocean with descriptions of three new species

description: Many cnidarians have been reported in association with hermit crabs from shallow waters to the deep sea. Some of these actiniarians and zoantharians produce a carcinoecium, a chitin-like pseudo-shell. Many studies have been conducted on hermit crab–actiniarian symbioses, while hermit crab–zoantharian symbioses have received less attention due to the difficulty of specimen collection as they are exclusively found in the deep sea. In this study, 11 carcinoecium-forming specimens associated with hermit crabs of several genera were collected from the western Pacific Ocean. We formally described the collected specimens as <i>Epizoanthus xenomorphoideus</i> sp. nov., <i>E. australis</i> sp. nov., and <i>E. gorgonus</i> sp. nov. based on results of molecular phylogenetic analyses (COI, mt 12S-rDNA, mt 16S-rDNA, 18S-rDNA, ITS-rDNA) and morphological observations. Our phylogenetic results showed that there are two different subclades within a carcinoecium clade, and these subclades have different external morphologies. Further studies with more taxon sampling will enable a more comprehensive evaluation of the evolution and phylogenetic relationships of carcinoecium-forming zoantharian species.
DOI: 10.25380/iastate.11366003
title: Hamby 44 Ruger P-85 LEA scans

description: <b>Email csafe@iastate.edu to obtain the data.</b><br><br>The data consist of scans of bullet land engraved areas in x3p format. The study is structured so that there are 10 barrels (numbered 1-10) used to fire the bullets in the study, with two bullets known to be fired from each barrel (Bullet1, Bullet2). Each bullet contains 6 land engraved areas, which are identified as Land 1-Land 6. <br> In addition to the 20 bullets with known provenance, there are 15 "unknown" bullets which can be matched to the 10 barrels, for a total of 35 bullets. Each bullet has 6 land engraved areas, for a total of 210 scans. <br> <br> The x3p format provides for the inclusion of relevant metadata within the x3p file, including the machine used to scan the bullets, the operator, and the resolution of the scan. Each file is around 20 MB, for a total dataset size of 2.6 GB. <br> <br> Files are grouped as follows: BarrelXX/BulletY/LandZ.x3p, with Unknown bullets identified by a letter from A-Z instead of a number (1 or 2).<br> <br> Hamby studies, which use the same 10 barrels and have the same structure, have been used to test firearms examiners across the country. They use Ruger P85 barrels with 9mm ammunition. <br> <br> Information on x3p format: https://www.iso.org/standard/62310.html <br> <br> We have produced two R packages meant to work with this data: <br> - x3ptools (on CRAN, with dev versions on github at heike/x3ptools). x3ptools contains utilities for reading, writing, annotating, rendering, and exporting x3p data to other formats. <br> - bulletxtrctr (dev version on github at heike/bulletxtrctr). bulletxtrctr contains utilities for extracting useful data from bullet LEA scans as well as a matching algorithm used to match unknown bullets to the barrels they were fired from. <br> <br> Scans were created by the Roy J. Carver Microscopy Lab at Iowa State.
DOI: 10.6084/m9.figshare.11365997
title: Taxonomic discrimination of the <i>Paeonia mascula</i> group in the Tyrrhenian Islands by seed image analysis

description: The taxonomy of the <i>Paeonia mascula</i> group in the Tyrrhenian Islands has always been controversial, especially in Sardinia and Corsica. In this paper, 124 morpho-colorimetric quantitative and qualitative features of seeds of the <i>Paeonia mascula</i> group from the Balearic Islands, Corsica, Sicily, and Sardinia were measured by an image analysis system to evaluate whether differences in seed morphology were present and if the results support the current taxonomic treatment. Digital images of 41 accessions for a total of 3,317 seeds were acquired using a flatbed scanner, and morpho-colorimetric seed features were analysed using a plugin developed for the open source software ImageJ. The data were statistically processed by applying the stepwise Linear Discriminant Analysis (LDA). The results showed that the seeds of the studied taxa were distinguishable with a high percentage of classification and highlighted that three different taxa are identifiable in Corsica (<i>P. corsica</i>, <i>P. mascula</i> subsp. <i>mascula</i>, and <i>P. morisii</i>), while only one (<i>P. cambessedesii</i>) is identifiable in the Balearic Islands. In the same way, the morpho-colorimetric analysis identified two well-defined taxa in Sicily (<i>P. mascula</i> subsp. <i>mascula</i> and <i>P. mascula</i> subsp. <i>russoi</i>). On the other hand, the discriminant analysis suggested that only <i>P. corsica/morisii</i> and <i>P. sandrae</i> were present in Sardinia, while differences were highlighted between Sardinian and Corsican peonies. The present study represents the first attempt to investigate the taxonomy of the <i>P. mascula</i> group, which makes in-depth usage of the seed features as diagnostic characters. The results obtained in this work enable the usefulness of image analysis techniques in taxonomic investigations to be suggested in order to contribute to the future systematic evaluation.
DOI: 10.6084/m9.figshare.11365850
title: Testing Alfvén wave propagation in a “realistic” set-up of the solar atmosphere

description: We present a radiative magneto-hydrodynamic simulation set-up using the pencil code to study the generation, propagation and dissipation of Alfvén waves in the solar atmosphere which includes a convective layer, photosphere below and chromosphere, transition region and the corona above. We prepare a set-up of steady-state solar convection where the imposed external magnetic field also has reached the final value gradually starting from a very small value. From that state, we start several simulations by varying the magnetic Prandtl number and the forcing strengths. We find the propagation characteristics of waves excited in this simulation run depend strongly on the magnetic Prandtl number and the wave number of the forcing. For magnetic Prandtl number of unity, we obtain localised heating in the corona due to shock dissipation.
DOI: 10.25380/iastate.11366003.v1
title: Hamby 44 Ruger P-85 LEA scans

description: <b>Email csafe@iastate.edu to obtain the data.</b><br><br>The data consist of scans of bullet land engraved areas in x3p format. The study is structured so that there are 10 barrels (numbered 1-10) used to fire the bullets in the study, with two bullets known to be fired from each barrel (Bullet1, Bullet2). Each bullet contains 6 land engraved areas, which are identified as Land 1-Land 6. <br> In addition to the 20 bullets with known provenance, there are 15 "unknown" bullets which can be matched to the 10 barrels, for a total of 35 bullets. Each bullet has 6 land engraved areas, for a total of 210 scans. <br> <br> The x3p format provides for the inclusion of relevant metadata within the x3p file, including the machine used to scan the bullets, the operator, and the resolution of the scan. Each file is around 20 MB, for a total dataset size of 2.6 GB. <br> <br> Files are grouped as follows: BarrelXX/BulletY/LandZ.x3p, with Unknown bullets identified by a letter from A-Z instead of a number (1 or 2).<br> <br> Hamby studies, which use the same 10 barrels and have the same structure, have been used to test firearms examiners across the country. They use Ruger P85 barrels with 9mm ammunition. <br> <br> Information on x3p format: https://www.iso.org/standard/62310.html <br> <br> We have produced two R packages meant to work with this data: <br> - x3ptools (on CRAN, with dev versions on github at heike/x3ptools). x3ptools contains utilities for reading, writing, annotating, rendering, and exporting x3p data to other formats. <br> - bulletxtrctr (dev version on github at heike/bulletxtrctr). bulletxtrctr contains utilities for extracting useful data from bullet LEA scans as well as a matching algorithm used to match unknown bullets to the barrels they were fired from. <br> <br> Scans were created by the Roy J. Carver Microscopy Lab at Iowa State.
DOI: 10.6084/m9.figshare.11365997.v1
title: Taxonomic discrimination of the <i>Paeonia mascula</i> group in the Tyrrhenian Islands by seed image analysis

description: The taxonomy of the <i>Paeonia mascula</i> group in the Tyrrhenian Islands has always been controversial, especially in Sardinia and Corsica. In this paper, 124 morpho-colorimetric quantitative and qualitative features of seeds of the <i>Paeonia mascula</i> group from the Balearic Islands, Corsica, Sicily, and Sardinia were measured by an image analysis system to evaluate whether differences in seed morphology were present and if the results support the current taxonomic treatment. Digital images of 41 accessions for a total of 3,317 seeds were acquired using a flatbed scanner, and morpho-colorimetric seed features were analysed using a plugin developed for the open source software ImageJ. The data were statistically processed by applying the stepwise Linear Discriminant Analysis (LDA). The results showed that the seeds of the studied taxa were distinguishable with a high percentage of classification and highlighted that three different taxa are identifiable in Corsica (<i>P. corsica</i>, <i>P. mascula</i> subsp. <i>mascula</i>, and <i>P. morisii</i>), while only one (<i>P. cambessedesii</i>) is identifiable in the Balearic Islands. In the same way, the morpho-colorimetric analysis identified two well-defined taxa in Sicily (<i>P. mascula</i> subsp. <i>mascula</i> and <i>P. mascula</i> subsp. <i>russoi</i>). On the other hand, the discriminant analysis suggested that only <i>P. corsica/morisii</i> and <i>P. sandrae</i> were present in Sardinia, while differences were highlighted between Sardinian and Corsican peonies. The present study represents the first attempt to investigate the taxonomy of the <i>P. mascula</i> group, which makes in-depth usage of the seed features as diagnostic characters. The results obtained in this work enable the usefulness of image analysis techniques in taxonomic investigations to be suggested in order to contribute to the future systematic evaluation.
DOI: 10.6084/m9.figshare.11365850.v1
title: Testing Alfvén wave propagation in a “realistic” set-up of the solar atmosphere

description: We present a radiative magneto-hydrodynamic simulation set-up using the pencil code to study the generation, propagation and dissipation of Alfvén waves in the solar atmosphere which includes a convective layer, photosphere below and chromosphere, transition region and the corona above. We prepare a set-up of steady-state solar convection where the imposed external magnetic field also has reached the final value gradually starting from a very small value. From that state, we start several simulations by varying the magnetic Prandtl number and the forcing strengths. We find the propagation characteristics of waves excited in this simulation run depend strongly on the magnetic Prandtl number and the wave number of the forcing. For magnetic Prandtl number of unity, we obtain localised heating in the corona due to shock dissipation.
DOI: 10.6084/m9.figshare.11365796
title: Metadata record for: Single-cell RNA sequencing of human kidney

description: This dataset contains key characteristics about the data described in the Data Descriptor Single-cell RNA sequencing of human kidney. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11365796.v2
title: Metadata record for: Single-cell RNA sequencing of human kidney

description: This dataset contains key characteristics about the data described in the Data Descriptor Single-cell RNA sequencing of human kidney. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11365796.v1
title: Metadata record for: Single-cell RNA sequencing of human kidney

description: This dataset contains key characteristics about the data described in the Data Descriptor Single-cell RNA sequencing of human kidney. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11365703
title: Outdoor dry bulb and adaptive comfort temperatures

description: The dataset constains the outdoor dry bulb temperature and relative humidity for the city of Tunis and the calculation of the adaptive thermal comfort temperature for the same location.
DOI: 10.6084/m9.figshare.11365721
title: Denison Organisational Culture scores

description: Denison organisational culture scores from 90 participants based in six primary healthcare clinics
DOI: 10.6084/m9.figshare.11365721.v2
title: Denison Organisational Culture scores

description: Denison organisational culture scores from 90 participants based in six primary healthcare clinics
DOI: 10.6084/m9.figshare.11365721.v1
title: Denison Organisational Culture scores

description: Denison organisational culture scores from 90 participants based in six primary healthcare clinics
DOI: 10.6084/m9.figshare.11365607
title: A Large Scale Study of Wikipedia Users' Perceived Quality of Experience

description: This set of data is the result of a joint Web QoE work conducted by the Telecom Paris researchers and the Wikimedia Foundation (https://meta.wikimedia.org/wiki/Research:Study_of_performance_perception_on_Wikimedia_projects, https://webqoe.telecom-paristech.fr/ ).<br>Both the datasets contain the user answers to the survey question appeared to the French and Russian Wikipedias during the time span ranging from 25/05/2018 to 15/10/2018. The first file ("<i>wikiqoe_datetime.csv</i>") contains three columns each one indicating respectively for every record: - the <b>wiki </b>of the page for which the user answer to the survey has been collected (either French or Russian), - the <b>time </b>rounded to the hour (in order to prevent user deanonymization) as a datetime object, - the <b>survey response</b> provided by the user (positive = 1, negative = -1, neutral = 0).<br>The second file ("<i>wikiqoe_public_available_features.csv</i>") contains 20 columns each one indicating respectively for every record:- the <b>wiki </b>from which the request was issued (ruwiki or frwiki),- 18 <b>performance</b> <b>metrics</b> (e.g., fetchStart, domInteractive, etc.<strong></strong>),- the <b>survey response</b> provided by the user (positive = 1, negative = -1, neutral = 0).<br>Note that the two dataset comprise the same set of users, but, for the second one, the time information is not provided, in order to avoid potential deanonymization using other (unknown) dataset.<br>The Wikimedia legal team has given clearance for the publication of these datasets, after having fully prevented user deanonymization and content-linkability.<br>More information and details regarding methodology and results can be found in the papers and in the technical report stored here: https://webqoe.telecom-paristech.fr/<br>If you use these datasets in your research, you can reference to the appropriate paper(s):<br>1) <pre><i>@inproceedings{salutari19www,</i><i>title = {A large-scale study of Wikipedia users’ quality of experience},</i><i>author = {Salutari, Flavia and Hora, Diego Da and Dubuc, Gilles and Rossi, Dario},</i><i>booktitle = {In proceedings of the 30th Web Conference (WWW'19)},</i><i>address = {San Francisco, CA, USA},</i><i>month = may,</i><i>year = {2019},</i><i>howpublished = {https://nonsns.github.io/paper/rossi19www.pdf}</i><i>}</i></pre>
DOI: 10.6084/m9.figshare.11365703.v1
title: Outdoor dry bulb and adaptive comfort temperatures

description: The dataset constains the outdoor dry bulb temperature and relative humidity for the city of Tunis and the calculation of the adaptive thermal comfort temperature for the same location.
DOI: 10.6084/m9.figshare.11365613
title: A dataset on secondary metabolites in bell pepper leaves

description: HPLC and non-invasive data on cynaroside and graveobioside A contents of bell pepper leaves, including accompaning information.<br>This description will be updated to a more detailed version, including a link to a related publication, once the manuscript is published. <br><br><br><br>
DOI: 10.6084/m9.figshare.11365703.v2
title: Outdoor dry bulb and adaptive comfort temperatures

description: The dataset constains the outdoor dry bulb temperature and relative humidity for the city of Tunis and the calculation of the adaptive thermal comfort temperature for the same location.
DOI: 10.6084/m9.figshare.11365598
title: Data from a 2017 survey of Irish organisations relating to their data management policy and practice

description: This dataset consists of anonymised survey data from a survey of 11 publicly-funded Irish organisations undertaken in 2017.<br>The survey intended to capture information on how Irish organisations are managing their data, what policies they have in place, and the extent to which recordkeeping professionals were involved in their data management practice.<br>Three of the original survey respondents did not agree that their responses could be shared, and these have been removed from the dataset. The dataset therefore include responses from 8 organisations in total.
DOI: 10.6084/m9.figshare.11365598.v1
title: Data from a 2017 survey of Irish organisations relating to their data management policy and practice

description: This dataset consists of anonymised survey data from a survey of 11 publicly-funded Irish organisations undertaken in 2017.<br>The survey intended to capture information on how Irish organisations are managing their data, what policies they have in place, and the extent to which recordkeeping professionals were involved in their data management practice.<br>Three of the original survey respondents did not agree that their responses could be shared, and these have been removed from the dataset. The dataset therefore include responses from 8 organisations in total.
DOI: 10.6084/m9.figshare.11365703.v3
title: Outdoor dry bulb and adaptive comfort temperatures

description: The dataset constains the outdoor dry bulb temperature and relative humidity for the city of Tunis and the calculation of the adaptive thermal comfort temperature for the same location.
DOI: 10.6084/m9.figshare.11365703.v4
title: Outdoor dry bulb and adaptive comfort temperatures

description: The dataset constains the outdoor dry bulb temperature and relative humidity for the city of Tunis and the calculation of the adaptive thermal comfort temperature for the same location.
DOI: 10.6084/m9.figshare.11365703.v5
title: Outdoor dry bulb and adaptive comfort temperatures

description: The dataset constains the outdoor dry bulb temperature and relative humidity for the city of Tunis and the calculation of the adaptive thermal comfort temperature for the same location.
DOI: 10.6084/m9.figshare.11365703.v7
title: Outdoor dry bulb and adaptive comfort temperatures

description: The dataset constains the outdoor dry bulb temperature and relative humidity for the city of Tunis and the calculation of the adaptive thermal comfort temperature for the same location.
DOI: 10.6084/m9.figshare.11365703.v6
title: Outdoor dry bulb and adaptive comfort temperatures

description: The dataset constains the outdoor dry bulb temperature and relative humidity for the city of Tunis and the calculation of the adaptive thermal comfort temperature for the same location.
DOI: 10.6084/m9.figshare.11365301
title: RA_16s_rRNA_File2

description: RA patients and healthy control 16s rRNA v3-v4 sequencing
DOI: 10.6084/m9.figshare.11365274
title: RA_16s_rRNA_File1

description: RA patients and healthy controls 16s rRNA v3-v4 sequencing