cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20098411
title: Additional file 1 of MIF/CXCR4 signaling axis contributes to survival, invasion, and drug resistance of metastatic neuroblastoma cells in the bone marrow microenvironment

description: Additional file 1: Additional Fig. 1: Gene expression in neuroblastoma tumors and cell lines. The figure includes correlation study and survival analysis from NB patient datasets and flow cytometry analysis from neuroblastoma cell lines. Additional Fig. 2: Validation of in vitro hypoxia cytometry. Additional Fig. 3: Effect of human recombinant MIF and siCXCR4 in neuroblastoma cell lines. Additional Fig. 4: Membrane CD74 levels by flow cytometry. Additional Fig. 5: Flow cytometry density plots of 4-IPP activity. Additional Fig. 6: LAN-1 viability exposed to CM-NB, CM-BM and treated with AMD-3100 and 4-IPP. LAN-1 response to chemotherapeutic agents when exposed to CM-CNT and treated with 4-IPP. Additional Table 1: Bone marrow samples. Additional Table 2: Primer list, and Additional Table 3: Antibody list.
DOI: 10.6084/m9.figshare.20098412
title: Additional file 1 of Genetic diversity and connectivity of chemosynthetic cold seep mussels from the U.S. Atlantic margin

description: Additional file 1. Table S1. Sample information for Gigantidas childressi and Bathymodiolus heckerae individuals collected from the study area from either Norfolk Canyon Seep (NCS), Baltimore Canyons Seep (BCS), Chincoteague Seep (CTS) or Blake Ridge Seep (BRS). The asterisk (*) denotes samples used in selection analyses, while the (x) denotes samples excluded from analyses based on sequencing results.
DOI: 10.6084/m9.figshare.20098412.v1
title: Additional file 1 of Genetic diversity and connectivity of chemosynthetic cold seep mussels from the U.S. Atlantic margin

description: Additional file 1. Table S1. Sample information for Gigantidas childressi and Bathymodiolus heckerae individuals collected from the study area from either Norfolk Canyon Seep (NCS), Baltimore Canyons Seep (BCS), Chincoteague Seep (CTS) or Blake Ridge Seep (BRS). The asterisk (*) denotes samples used in selection analyses, while the (x) denotes samples excluded from analyses based on sequencing results.
DOI: 10.6084/m9.figshare.20098427.v1
title: Additional file 6 of Genetic diversity and connectivity of chemosynthetic cold seep mussels from the U.S. Atlantic margin

description: Additional file 6. Table 6. Annotation information extracted from the G. platifrons genome (NCBI accession GCA_002080005.1 [36]), for the 427 unique bathymodioline genes corresponding to the outlier SNPs detected with pcadapt.
DOI: 10.6084/m9.figshare.20098427
title: Additional file 6 of Genetic diversity and connectivity of chemosynthetic cold seep mussels from the U.S. Atlantic margin

description: Additional file 6. Table 6. Annotation information extracted from the G. platifrons genome (NCBI accession GCA_002080005.1 [36]), for the 427 unique bathymodioline genes corresponding to the outlier SNPs detected with pcadapt.
DOI: 10.6084/m9.figshare.20098498
title: Additional file 4 of Changes in the quality of cancer care as assessed through performance indicators during the first wave of the COVID-19 pandemic in 2020: a scoping review

description: Additional file 4.
DOI: 10.6084/m9.figshare.20098498.v1
title: Additional file 4 of Changes in the quality of cancer care as assessed through performance indicators during the first wave of the COVID-19 pandemic in 2020: a scoping review

description: Additional file 4.
DOI: 10.6084/m9.figshare.20098552
title: Additional file 1 of rprimer: an R/bioconductor package for design of degenerate oligos for sequence variable viruses

description: Additional file 1. Data from the RT-qPCR experiment.
DOI: 10.6084/m9.figshare.20098552.v1
title: Additional file 1 of rprimer: an R/bioconductor package for design of degenerate oligos for sequence variable viruses

description: Additional file 1. Data from the RT-qPCR experiment.
DOI: 10.6084/m9.figshare.20098555
title: Additional file 2 of rprimer: an R/bioconductor package for design of degenerate oligos for sequence variable viruses

description: Additional file 2. MIQE checklist.
DOI: 10.6084/m9.figshare.20098555.v1
title: Additional file 2 of rprimer: an R/bioconductor package for design of degenerate oligos for sequence variable viruses

description: Additional file 2. MIQE checklist.
DOI: 10.6084/m9.figshare.20098607
title: Additional file 1 of Using text and charts to provide social norm feedback to general practices with high overall and high broad-spectrum antibiotic prescribing: a series of national randomised controlled trials

description: Additional file 1.
DOI: 10.6084/m9.figshare.20098607.v1
title: Additional file 1 of Using text and charts to provide social norm feedback to general practices with high overall and high broad-spectrum antibiotic prescribing: a series of national randomised controlled trials

description: Additional file 1.
DOI: 10.6084/m9.figshare.20098600.v1
title: Additional file 4 of G4Boost: a machine learning-based tool for quadruplex identification and stability prediction

description: Additional file 4: Table S1. The importance of the features. The contributions of the initial set of 26 features were evaluated and the top-ranking features were selected.
DOI: 10.6084/m9.figshare.20098600
title: Additional file 4 of G4Boost: a machine learning-based tool for quadruplex identification and stability prediction

description: Additional file 4: Table S1. The importance of the features. The contributions of the initial set of 26 features were evaluated and the top-ranking features were selected.
DOI: 10.6084/m9.figshare.20098603
title: Additional file 5 of G4Boost: a machine learning-based tool for quadruplex identification and stability prediction

description: Additional file 5: Table S2. The list of G4s that are better classified with Neural Networks.
DOI: 10.6084/m9.figshare.20098603.v1
title: Additional file 5 of G4Boost: a machine learning-based tool for quadruplex identification and stability prediction

description: Additional file 5: Table S2. The list of G4s that are better classified with Neural Networks.
DOI: 10.6084/m9.figshare.20098606
title: Additional file 6 of G4Boost: a machine learning-based tool for quadruplex identification and stability prediction

description: Additional file 6: Table S3. The predictions on the test data collected from X-ray crystallography experiments.
DOI: 10.6084/m9.figshare.20098606.v1
title: Additional file 6 of G4Boost: a machine learning-based tool for quadruplex identification and stability prediction

description: Additional file 6: Table S3. The predictions on the test data collected from X-ray crystallography experiments.
DOI: 10.6084/m9.figshare.20098609
title: Additional file 7 of G4Boost: a machine learning-based tool for quadruplex identification and stability prediction

description: Additional file 7: Data 1. G4Boost together with prebuilt prediction models and hyperparameters.
DOI: 10.6084/m9.figshare.20098609.v1
title: Additional file 7 of G4Boost: a machine learning-based tool for quadruplex identification and stability prediction

description: Additional file 7: Data 1. G4Boost together with prebuilt prediction models and hyperparameters.
DOI: 10.6084/m9.figshare.20098615
title: Additional file 1 of Enhanced production of hydroxy fatty acids in Arabidopsis seed through modification of multiple gene expression

description: Additional file 1: Table S1. Fatty acid composition of T2 seeds from pCam5 T1 plants. Table S2. Fatty acid composition of T3 seeds from pCam5 1 and pCam5 4 independent T2 plants (n = T3 line number). Table S3. Fatty acid composition of T4 seeds from pCam5 1–12, pCam5 1–16 and pCam5 4–5 independent T3 plants (n = T4 line number). Table S4. Fatty acid composition of T5 seeds from pCam5 1–12-8, pCam5 1–16-7, pCam5 1–16-8 and pCam5 4–5-2 independent T4 plants (n = T5 line number). Table S5. Fatty acid composition of T2 seeds pCam5-atfae1 1–12 and pCam5-atfae1 1–16 independent T3 plants (n = T2 pCam5-atfae1 line number). Table S6. Fatty acid composition of T3 seeds from pCam5-atfae1 5, pCam5-atfae1 9 and pCam5-atfae1 28 independent T2 plants (n = T3 pCam5-atfae1 line number). Table S7. Fatty acid composition of T4 seeds from pCam5-atfae1 5–9, pCam5-atfae1 28–3 independent T3 plants (n = T4 pCam5-atfae1 line number). Table S8. Promoter–gene–terminator was linked by infusion method and primer list used for pUC19 subcloning. Table S9. Primers were used in this study.
DOI: 10.6084/m9.figshare.20098615.v1
title: Additional file 1 of Enhanced production of hydroxy fatty acids in Arabidopsis seed through modification of multiple gene expression

description: Additional file 1: Table S1. Fatty acid composition of T2 seeds from pCam5 T1 plants. Table S2. Fatty acid composition of T3 seeds from pCam5 1 and pCam5 4 independent T2 plants (n = T3 line number). Table S3. Fatty acid composition of T4 seeds from pCam5 1–12, pCam5 1–16 and pCam5 4–5 independent T3 plants (n = T4 line number). Table S4. Fatty acid composition of T5 seeds from pCam5 1–12-8, pCam5 1–16-7, pCam5 1–16-8 and pCam5 4–5-2 independent T4 plants (n = T5 line number). Table S5. Fatty acid composition of T2 seeds pCam5-atfae1 1–12 and pCam5-atfae1 1–16 independent T3 plants (n = T2 pCam5-atfae1 line number). Table S6. Fatty acid composition of T3 seeds from pCam5-atfae1 5, pCam5-atfae1 9 and pCam5-atfae1 28 independent T2 plants (n = T3 pCam5-atfae1 line number). Table S7. Fatty acid composition of T4 seeds from pCam5-atfae1 5–9, pCam5-atfae1 28–3 independent T3 plants (n = T4 pCam5-atfae1 line number). Table S8. Promoter–gene–terminator was linked by infusion method and primer list used for pUC19 subcloning. Table S9. Primers were used in this study.
DOI: 10.6084/m9.figshare.20098631
title: Additional file 3 of The association of hyponatremia and clinical outcomes in patients with acute myocardial infarction: a cross-sectional study

description: Additional file 3. Data.
DOI: 10.6084/m9.figshare.20098633
title: Additional file 1 of DOA-guided source separation with direction-based initialization and time annotations using complex angular central Gaussian mixture models

description: Additional file 1 The audio examples have been enclosed as supplementary material with the submission. The files are identical to those accessible at https://users.ugent.be/~abohlend/DOA-GSS/ . Along with the speaker ID, the file name indicates which type of STAs and initialization were used, and how the mask was applied.
DOI: 10.6084/m9.figshare.20098633.v1
title: Additional file 1 of DOA-guided source separation with direction-based initialization and time annotations using complex angular central Gaussian mixture models

description: Additional file 1 The audio examples have been enclosed as supplementary material with the submission. The files are identical to those accessible at https://users.ugent.be/~abohlend/DOA-GSS/ . Along with the speaker ID, the file name indicates which type of STAs and initialization were used, and how the mask was applied.
DOI: 10.6084/m9.figshare.20098640.v1
title: Additional file 2 of Levels of perceived stress according to professional standings among dental surgeons of Karachi: a descriptive study

description: Additional file 2. Complete data set.
DOI: 10.6084/m9.figshare.20098640
title: Additional file 2 of Levels of perceived stress according to professional standings among dental surgeons of Karachi: a descriptive study

description: Additional file 2. Complete data set.
DOI: 10.6084/m9.figshare.20098693
title: Additional file 1 of Deviations from typical paths: a novel approach to working with GPS data in the behavioral sciences

description: Additional file 1. Simulate Data.
DOI: 10.6084/m9.figshare.20098693.v1
title: Additional file 1 of Deviations from typical paths: a novel approach to working with GPS data in the behavioral sciences

description: Additional file 1. Simulate Data.
DOI: 10.6084/m9.figshare.20098696
title: Additional file 2 of Deviations from typical paths: a novel approach to working with GPS data in the behavioral sciences

description: Additional file 2. Process Analyze Data.
DOI: 10.6084/m9.figshare.20098696.v1
title: Additional file 2 of Deviations from typical paths: a novel approach to working with GPS data in the behavioral sciences

description: Additional file 2. Process Analyze Data.
DOI: 10.6084/m9.figshare.20098699
title: Additional file 3 of Deviations from typical paths: a novel approach to working with GPS data in the behavioral sciences

description: Additional file 3. Real Data Example.
DOI: 10.6084/m9.figshare.20098699.v1
title: Additional file 3 of Deviations from typical paths: a novel approach to working with GPS data in the behavioral sciences

description: Additional file 3. Real Data Example.
DOI: 10.6084/m9.figshare.20098738
title: Additional file 1 of Comparison of usability evaluation methods for a health information system: heuristic evaluation versus cognitive walkthrough method

description: Additional file 1. Study data extraction sheet.
DOI: 10.6084/m9.figshare.20098738.v1
title: Additional file 1 of Comparison of usability evaluation methods for a health information system: heuristic evaluation versus cognitive walkthrough method

description: Additional file 1. Study data extraction sheet.
DOI: 10.6084/m9.figshare.20098756
title: Additional file 1 of Synergistic anti-SARS-CoV-2 activity of repurposed anti-parasitic drug combinations

description: Additional file 1.
DOI: 10.6084/m9.figshare.20098756.v1
title: Additional file 1 of Synergistic anti-SARS-CoV-2 activity of repurposed anti-parasitic drug combinations

description: Additional file 1.
DOI: 10.6084/m9.figshare.20098784.v1
title: Additional file 10 of Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer

description: Additional file 10: S5. Single-cell RNA sequencing: scRNAseq_DGE: differentially expressed genes between tumor and benign conditions, scRNAseq_DGE_arterial_NEC_vs_TEC:gene list discriminating NEC versus TEC by scRNAseq,All_Clusters_GeneList:maker genes differentiating the cell clusters by scRNAseq, M1_vs_M2_GeneList: gene list differentiating between M1 and M2 macrophages by scRNAseq, Endothelial_Clusters_GeneList:gene list for Tip cells, Immature cells Venous plexus and Artery Endothelial clusters by scRNA-seq.
DOI: 10.6084/m9.figshare.20098784
title: Additional file 10 of Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer

description: Additional file 10: S5. Single-cell RNA sequencing: scRNAseq_DGE: differentially expressed genes between tumor and benign conditions, scRNAseq_DGE_arterial_NEC_vs_TEC:gene list discriminating NEC versus TEC by scRNAseq,All_Clusters_GeneList:maker genes differentiating the cell clusters by scRNAseq, M1_vs_M2_GeneList: gene list differentiating between M1 and M2 macrophages by scRNAseq, Endothelial_Clusters_GeneList:gene list for Tip cells, Immature cells Venous plexus and Artery Endothelial clusters by scRNA-seq.
DOI: 10.6084/m9.figshare.20098802
title: Additional file 6 of Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer

description: Additional file 6: S1. Key resources.
DOI: 10.6084/m9.figshare.20098805
title: Additional file 7 of Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer

description: Additional file 7: S2. Patient characteristics.
DOI: 10.6084/m9.figshare.20098805.v1
title: Additional file 7 of Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer

description: Additional file 7: S2. Patient characteristics.
DOI: 10.6084/m9.figshare.20098802.v1
title: Additional file 6 of Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer

description: Additional file 6: S1. Key resources.
DOI: 10.6084/m9.figshare.20098808
title: Additional file 8 of Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer

description: Additional file 8: S3. Bulk RNA-seq: differentially expressed genes between cultured TEC and NEC.
DOI: 10.6084/m9.figshare.20098808.v1
title: Additional file 8 of Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer

description: Additional file 8: S3. Bulk RNA-seq: differentially expressed genes between cultured TEC and NEC.
DOI: 10.6084/m9.figshare.20098811
title: Additional file 9 of Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer

description: Additional file 9: S4. Pathway analysis of bulk and single-cell RNA sequencing: list of pathways differentiating NEC vs TEC as inferred from the GSEA analysis. scRNA-seq_tip cell_pathways: Tip cell-enriched pathways as inferred from the GSEA analysis.
DOI: 10.6084/m9.figshare.20098811.v1
title: Additional file 9 of Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer

description: Additional file 9: S4. Pathway analysis of bulk and single-cell RNA sequencing: list of pathways differentiating NEC vs TEC as inferred from the GSEA analysis. scRNA-seq_tip cell_pathways: Tip cell-enriched pathways as inferred from the GSEA analysis.
DOI: 10.34808/hsqy-3z19
title: Burkitt lymphoma, NOS - Male, 34 - Tissue image [6190730017322291]

description: This is the histopathological image of STOMACH tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 34Clinical description: Tumor of stomach.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: MATURE B-CELL LYMPHOMASDiagnosis: Burkitt lymphoma, NOSResult of the histopathological examination: Burkitt lymphoma: CD20+, CD10+, bcl6+, Cmyc+, CD3-, bcl2-, MUM1-, Tdt-, Cyclin D1-, Ki-67 100%. MYC rearrangement (no BCL2 and BCL6 rearrangement ).Sample:Material: FFPECollecting method: Surgical biopsyTopography: DIGESTIVE ORGANSOrgan: STOMACHTissue: Stomach, NOSType of staining: positive/IHCStaining: Not applicableAntibody: CD 3Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/jewy-vd86
title: CIN III, NOS - Female, 43 - Tissue image [6190730017333271]

description: This is the histopathological image of CERVIX UTERI tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 43Clinical description: No clinical data.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: SQUAMOUS CELL NEOPLASMSDiagnosis: CIN III, NOSResult of the histopathological examination: CIN III.Sample:Material: FFPECollecting method: Surgical biopsyTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/xm13-5940
title: Clear cell acanthoma - Male, 57 - Tissue image [6190730017335231]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 57Clinical description: Brown flat lesion of skin of lower limb with dimensions 0,6 x 0,6 cm.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: SQUAMOUS CELL NEOPLASMSDiagnosis: Clear cell acanthomaResult of the histopathological examination: Clear cell acanthoma.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of lower limbType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/4mnf-6a91
title: Papillary carcinoma of thyroid - Female, 27 - Tissue image [6190730017326491]

description: This is the histopathological image of THYROID GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 27Clinical description: 15 x 14 mm hyperechoic tumor of thyroid gland on ultrasound. FNAC: suspicion of papillary thyroid carcinoma (Bethesda V). Enlarged cervical lymph nodes.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Papillary carcinoma of thyroidResult of the histopathological examination: Papillary thyroid carcinoma. Metastases of papillary thyroid carcinoma to lymph nodes.Sample:Material: FFPECollecting method: Surgical specimenTopography: THYROID AND OTHER ENDOCRINE GLANDSOrgan: THYROID GLANDTissue: Thyroid glandType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/zyk7-yd15
title: Seborrhoeic keratosis - Female, 66 - Tissue image [6190730017339281]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 66Clinical description: Brown lesion of skin of axilla with dimensions 1,8 x 1,1, cm.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XII - Diseases of the skin and subcutaneous tissueDiagnosis: Seborrhoeic keratosisResult of the histopathological examination: Seborrhoeic keratosis.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of axillaType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk