cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7113726
title: Raw SIA data and primary analysis results

description: Raw data obtained from stable isotope analysis of <em>δ</em><sup>13</sup>C and <em>δ</em><sup>15</sup>N in beaks of the Arctic squid, <em>Gonatus fabricii</em> (Lichtenstein, 1818) (Cephalopoda: Oegopsida), and primary analyses of these data. Raw data for the following open access peer-reviewed paper: <strong>Life history of the Arctic squid <em>Gonatus fabricii</em> (Cephalopoda: Oegopsida) reconstructed by analysis of individual ontogenetic stable isotopic trajectories</strong> Paper can be accessed at: https://www.mdpi.com/2076-2615/12/24/3548 Paper's doi: https://doi.org/10.3390/ani12243548
DOI: 10.15468/dl.kcruwr
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cymbidium hookerianum Rchb.f.",
 "Year 1000-2024"
 ]
}

 The dataset includes 50 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009735-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12634089
title: Dataset for "Effects of Copper on the Chemical Kinetics and Brown Carbon Formation in the Aqueous ∙OH oxidation of Phenolic Compounds"

description: This is the dataset for "Effects of Copper on the Chemical Kinetics and Brown Carbon Formation in the Aqueous ∙OH oxidation of Phenolic Compounds" (Submitted to ESPI).
DOI: 10.5281/zenodo.12634090
title: Dataset for "Effects of Copper on the Chemical Kinetics and Brown Carbon Formation in the Aqueous ∙OH oxidation of Phenolic Compounds"

description: This is the dataset for "Effects of Copper on the Chemical Kinetics and Brown Carbon Formation in the Aqueous ∙OH oxidation of Phenolic Compounds" (Submitted to ESPI).
DOI: 10.15468/dl.698mtf
title: Occurrence Download

description: A dataset containing 3070865 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Observation, Machine Observation, Human Observation)",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 3070865 records from 1153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046118-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26161666
title: DataRAC2001.xlsx

description: Introduction: Modern fish farming faces challenges in sourcing feed ingredients, most related with their prices, 21 availability, and specifically for plant protein sources, competition for the limited cultivation space for 22 vegetable crops. In that sense, halophytes have the added value of being rich in valuable bioactive compounds and salt tolerant. This study assessed the inclusion of non-food fractions of S. ramosissima in European seabass diets.Methods: Different levels (2.5%, 5%, and 10%) were incorporated into seabass diets, replacing wheat meal (diets ST2.5, ST5, and ST10) or without inclusion (CTRL). Experimental diets were administered to seabass juveniles (8.62 ± 0.63 g) for 34 and 62 days and subsequent inflammatory responses to a heat-inactivated Photobacterium damselae subsp. piscicida (Phdp) were evaluated in a timecourse manner (4, 24, 48, and 72 h after the challenge). At each sampling point, seabass haematological profile, plasma immune parameters, and head-kidney immune-related gene expression were evaluated.Results: After both feeding periods, most parameters remained unaltered by S. ramosissima inclusion; nonetheless, seabass fed ST10 showed an upregulation of macrophage colony-stimulating factor 1 receptor 1 (mcsf1r1) and cluster of differentiation 8 (cd8b) compared with those fed CTRL after 62 days of feeding. Regarding the inflammatory response, seabass fed ST10 showed lower plasma lysozyme levels than their counterparts fed ST2.5 and ST5 at 24 h following injection, while 4 h after the inflammatory stimulus, seabass fed ST10 presented higher numbers of peritoneal leucocytes than fish fed CTRL. Moreover, at 4 h, fish fed ST2.5, ST5, and ST10 showed a higher expression of interleukin 1b (il1b), while fish fed ST5 showed higher levels of ornithine decarboxylase (odc) than those fed CTRL. An upregulation of macrophage colony-stimulating factor 1 receptor 1 (mcsf1r1) and glutathione peroxidase (gpx) was also observed at 72 h in fish fed ST10 or ST5 and ST10 compared with CTRL, respectively.Discussion: In conclusion, incorporating up to 10% of the non-food fraction S. ramosissima in feed did not compromise seabass growth or immune status after 62 days, aligning with circular economy principles. However, S. ramosissima inclusion improved the leucocyte response and upregulated key immunerelated genes in seabass challenged with an inactivated pathogen.
DOI: 10.6084/m9.figshare.26161666.v1
title: DataRAC2001.xlsx

description: Introduction: Modern fish farming faces challenges in sourcing feed ingredients, most related with their prices, 21 availability, and specifically for plant protein sources, competition for the limited cultivation space for 22 vegetable crops. In that sense, halophytes have the added value of being rich in valuable bioactive compounds and salt tolerant. This study assessed the inclusion of non-food fractions of S. ramosissima in European seabass diets.Methods: Different levels (2.5%, 5%, and 10%) were incorporated into seabass diets, replacing wheat meal (diets ST2.5, ST5, and ST10) or without inclusion (CTRL). Experimental diets were administered to seabass juveniles (8.62 ± 0.63 g) for 34 and 62 days and subsequent inflammatory responses to a heat-inactivated Photobacterium damselae subsp. piscicida (Phdp) were evaluated in a timecourse manner (4, 24, 48, and 72 h after the challenge). At each sampling point, seabass haematological profile, plasma immune parameters, and head-kidney immune-related gene expression were evaluated.Results: After both feeding periods, most parameters remained unaltered by S. ramosissima inclusion; nonetheless, seabass fed ST10 showed an upregulation of macrophage colony-stimulating factor 1 receptor 1 (mcsf1r1) and cluster of differentiation 8 (cd8b) compared with those fed CTRL after 62 days of feeding. Regarding the inflammatory response, seabass fed ST10 showed lower plasma lysozyme levels than their counterparts fed ST2.5 and ST5 at 24 h following injection, while 4 h after the inflammatory stimulus, seabass fed ST10 presented higher numbers of peritoneal leucocytes than fish fed CTRL. Moreover, at 4 h, fish fed ST2.5, ST5, and ST10 showed a higher expression of interleukin 1b (il1b), while fish fed ST5 showed higher levels of ornithine decarboxylase (odc) than those fed CTRL. An upregulation of macrophage colony-stimulating factor 1 receptor 1 (mcsf1r1) and glutathione peroxidase (gpx) was also observed at 72 h in fish fed ST10 or ST5 and ST10 compared with CTRL, respectively.Discussion: In conclusion, incorporating up to 10% of the non-food fraction S. ramosissima in feed did not compromise seabass growth or immune status after 62 days, aligning with circular economy principles. However, S. ramosissima inclusion improved the leucocyte response and upregulated key immunerelated genes in seabass challenged with an inactivated pathogen.
DOI: 10.15468/dl.tynaux
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is DEU.3_1",
 "Month is one of (April, May, June, July, March)",
 "TaxonKey is Scolopax rusticola Linnaeus, 1758",
 "Year 2000-2024"
 ]
}

 The dataset includes 119 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009736-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ssbzmb
title: Occurrence Download

description: A dataset containing 545726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, United Kingdom of Great Britain and Northern Ireland, Portugal, Spain, Italy, Greece, Svalbard and Jan Mayen, Denmark, Norway, Sweden, Finland, Estonia, Latvia, Lithuania, Belgium, Netherlands, France, Germany, Switzerland, Austria, Türkiye, Russian Federation, Belarus, Ukraine, Romania, Bulgaria, North Macedonia, Albania, Montenegro, Serbia, Kosovo, Slovenia, Bosnia and Herzegovina, Poland, Czechia, Slovakia, Hungary)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lysimachia vulgaris L."
 ]
}

 The dataset includes 545726 records from 1828 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009728-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17867938
title: LINF_300016900

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.17867939
title: LINF_300016900

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.w7357c
title: Occurrence Download

description: A dataset listing the 729 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.18785 48.90856,2.23822 48.90856,2.23822 48.94546,2.18785 48.94546,2.18785 48.90856))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset's 729 records were derived from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040741-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/72ty5v9djn
title: Molecular and Phenotypic blueprint of human hematopoiesis links proliferation stress to stem cell aging

description: Hematopoietic stem/progenitor cell (HSPC) aging has long been associated with myeloid skewing, reduced clonal output, and impaired regenerative capacity, but quantitative immunophenotypic and functional analysis across the human lifespan has been lacking. Here, we provide a comprehensive phenotypic, transcriptional, and functional dissection of human hematopoiesis from youth to advanced age. Although primitive hematopoietic stem cell (HSC) numbers were stable during aging, overall cellularity declined, especially for erythroid and lymphoid lineages. HSPC from older individuals exhibited repopulating frequencies comparable to those from younger donors in both primary and secondary xenografts; however, aged HSC displayed impaired differentiation, chromatin and cell-cycle dysregulation, and poor tolerance to activation-induced proliferative stress, resulting in DNA damage and senescence-like features post-xenotransplantation. Importantly, imposing proliferative stress on young human HSPCs in vivo recapitulated key aging-associated phenotypic and functional declines. Together, our findings identify dysregulated activation responses as a defining feature of HSPC aging and establish proliferative stress–based xenotransplantation models as powerful platforms for investigating age-related hematopoietic dysfunctions.

This work is published on Journal of Experimental Medicine (doi: 10.1084/jem.20251805)
All the data generated in this study have been deposited in the San Raffaele Open Research Data Repository under accession code doi: 10.17632/72ty5v9djn.1
The RNA and ATAC sequencing data generated and discussed in this study have been deposited in NCBI's Gene Expression Omnibus (Edgar et al., 2002) and are accessible through GEO SuperSeries GSE311225, which contains the following data: GSE243327 (RNA-seq), GSE311221 (ATAC-seq).
The code used to process and to generate the images of RNAseq data in this manuscript is available at: http://www.bioinfotiget.it/gitlab/custom/LetteraScala_Ageing/bulk_RNAseq.
WES data generated and discussed in this study are available at the European Nucleotide Archive (ENA) under the following accession code: PRJEB93902
DOI: 10.17632/72ty5v9djn.1
title: Molecular and Phenotypic blueprint of human hematopoiesis links proliferation stress to stem cell aging

description: Hematopoietic stem/progenitor cell (HSPC) aging has long been associated with myeloid skewing, reduced clonal output, and impaired regenerative capacity, but quantitative immunophenotypic and functional analysis across the human lifespan has been lacking. Here, we provide a comprehensive phenotypic, transcriptional, and functional dissection of human hematopoiesis from youth to advanced age. Although primitive hematopoietic stem cell (HSC) numbers were stable during aging, overall cellularity declined, especially for erythroid and lymphoid lineages. HSPC from older individuals exhibited repopulating frequencies comparable to those from younger donors in both primary and secondary xenografts; however, aged HSC displayed impaired differentiation, chromatin and cell-cycle dysregulation, and poor tolerance to activation-induced proliferative stress, resulting in DNA damage and senescence-like features post-xenotransplantation. Importantly, imposing proliferative stress on young human HSPCs in vivo recapitulated key aging-associated phenotypic and functional declines. Together, our findings identify dysregulated activation responses as a defining feature of HSPC aging and establish proliferative stress–based xenotransplantation models as powerful platforms for investigating age-related hematopoietic dysfunctions.

This work is published on Journal of Experimental Medicine (doi: 10.1084/jem.20251805)
All the data generated in this study have been deposited in the San Raffaele Open Research Data Repository under accession code doi: 10.17632/72ty5v9djn.1
The RNA and ATAC sequencing data generated and discussed in this study have been deposited in NCBI's Gene Expression Omnibus (Edgar et al., 2002) and are accessible through GEO SuperSeries GSE311225, which contains the following data: GSE243327 (RNA-seq), GSE311221 (ATAC-seq).
The code used to process and to generate the images of RNAseq data in this manuscript is available at: http://www.bioinfotiget.it/gitlab/custom/LetteraScala_Ageing/bulk_RNAseq.
WES data generated and discussed in this study are available at the European Nucleotide Archive (ENA) under the following accession code: PRJEB93902
DOI: 10.17026/ar/wdjvvg
title: PAN-00142582 - terra sigillata plate type Drag. 18/31

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00142582&lt;/p&gt;
description: Modified: 2025-10-19T11:15:52+02:00
DOI: 10.15468/dl.dvwuzm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((100.928 1.166183, 100.857723 1.160616, 100.789176 1.14405, 100.72405 1.116893, 100.663947 1.079815, 100.610348 1.033729, 100.564572 0.9797709999999999, 100.527747 0.919268, 100.500779 0.853711, 100.484331 0.7847150000000001, 100.478808 0.713978, 100.484345 0.643242, 100.500805 0.574249, 100.527783 0.508697, 100.564614 0.4482, 100.610392 0.394248, 100.663989 0.348169, 100.724085 0.311097, 100.789202 0.283945, 100.857736 0.267382, 100.928 0.261816, 100.998264 0.267382, 101.066798 0.283945, 101.131915 0.311097, 101.192011 0.348169, 101.245608 0.394248, 101.291386 0.4482, 101.328217 0.508697, 101.355195 0.574249, 101.371655 0.643242, 101.377192 0.713978, 101.371669 0.7847150000000001, 101.355221 0.853711, 101.328253 0.919268, 101.291428 0.9797709999999999, 101.245652 1.033729, 101.192053 1.079815, 101.13195 1.116893, 101.066824 1.14405, 100.998277 1.160616, 100.928 1.166183))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040767-251120083545085/datasets/export for details.
DOI: 10.15468/dl.ucqqny
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paraktedrilus bakeri",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040768-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/7190
title: OT_Trade
DOI: 10.3535/55n-s4l-vwc
title: Hohenbuehelia

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/y9k-xwz-s0y
title: Mycena

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/4fn-1jh-9gv
title: Thelephora

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/t5b-q6n-6v5
title: Podoscypha simulans (D.A. Reid) Sheng H. Wu

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/v9j-mj6-439
title: Cerioporus tropicus (B.K. Cui, Hai J. Li & Y.C. Dai) Zmitr.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ft1-f0m-ffc
title: Lactarius

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/jsj-r5b-djr
title: Cerioporus tropicus (B.K. Cui, Hai J. Li & Y.C. Dai) Zmitr.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.gqkq7n
title: Occurrence Download

description: A dataset containing 1137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyphaene thebaica",
 "Continent is Africa"
 ]
}

 The dataset includes 1137 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040769-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvstnb
title: Occurrence Download

description: A dataset containing 5347 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlebotomus perniciosus"
 ]
}

 The dataset includes 5347 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040771-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17865536
title: Subjective Wellbeing Metrics in the European Economic Area, ESS Round 6 (2012/13)

description: This data repository makes available subjective wellbeing (SWB) metrics in the European Economic Area. This dataset presents results derived from Round 6 (2012/13) of the European Social Survey (ESS, doi:10.21338/ess6e02_6), a cross-national survey collecting harmonised information on people’s attitudes, behaviours, and wellbeing across Europe. 

This dataset is a subset of the data extracted from the report entitled "Wellbeing and Quality of Life in Rural Europe" by Knies and Hopkins (Deliverable D4.4, Appendix 7 (A3-4) - GRANULAR project), aimed at advancing the understanding of subjective wellbeing across rural (and urban) Europe, combining systematic review, conceptual extension, and novel empirical analysis. 

The analysis focuses on European Economic Area (EEA) countries participating in Round 6 and accounts for the ESS’s complex survey design, using population weights and considering clustering and stratification as appropriate.

Subjective wellbeing is measured across five multidimensional domains, based on the ESS “Personal and Social Wellbeing” module and aligned with the conceptual framework proposed by Martela, Delle-Fave et al. (2023). All items are scaled so that higher values indicate higher wellbeing. For each domain, a domain-specific wellbeing index was computed using the Mazziotta–Pareto Index (MPI) to capture deviations from the European average (index = 100). The dataset includes respondents aged 15 years and older living in private households with complete information on settlement type, sociodemographic characteristics, and all wellbeing indicators.

All data sources and data processing are described in this resource.
DOI: 10.5281/zenodo.17865535
title: Subjective Wellbeing Metrics in the European Economic Area, ESS Round 6 (2012/13)

description: This data repository makes available subjective wellbeing (SWB) metrics in the European Economic Area. This dataset presents results derived from Round 6 (2012/13) of the European Social Survey (ESS, doi:10.21338/ess6e02_6), a cross-national survey collecting harmonised information on people’s attitudes, behaviours, and wellbeing across Europe. 

This dataset is a subset of the data extracted from the report entitled "Wellbeing and Quality of Life in Rural Europe" by Knies and Hopkins (Deliverable D4.4, Appendix 7 (A3-4) - GRANULAR project), aimed at advancing the understanding of subjective wellbeing across rural (and urban) Europe, combining systematic review, conceptual extension, and novel empirical analysis. 

The analysis focuses on European Economic Area (EEA) countries participating in Round 6 and accounts for the ESS’s complex survey design, using population weights and considering clustering and stratification as appropriate.

Subjective wellbeing is measured across five multidimensional domains, based on the ESS “Personal and Social Wellbeing” module and aligned with the conceptual framework proposed by Martela, Delle-Fave et al. (2023). All items are scaled so that higher values indicate higher wellbeing. For each domain, a domain-specific wellbeing index was computed using the Mazziotta–Pareto Index (MPI) to capture deviations from the European average (index = 100). The dataset includes respondents aged 15 years and older living in private households with complete information on settlement type, sociodemographic characteristics, and all wellbeing indicators.

All data sources and data processing are described in this resource.
DOI: 10.15468/dl.s8n8du
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pectinodrilus duplex",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040773-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.