cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5n87397g
title: MassIVE MSV000094091 - Elucidation of the Gene Regulatory Networks Governing Terpenoid-Mediated Plant-Environment Interactions to Enable Advanced Bioenergy Crops
title: The proposed project aims to elucidate the gene-regulatory networks (GRNs) underlying terpenoid metabolism in three major bioenergy crops, switchgrass (Panicum virgatum), maize (Zea mays), and sorghum (Sorghum bicolor), to aid crop development for enhanced stress resilience and biofuel production from biomass feedstock. Prior studies identified more than 50 terpene synthases (TPS) and cytochrome P450 monooxygenases (P450), as key enzymes in generating bioactive terpenoids, in several bioenergy plants including switchgrass and maize. This knowledge now enables a precise investigation of the GRNs that govern common and species-specific terpenoid pathways. We will integrate transcription factor (TF) functional studies, TF binding site mapping, transcript and metabolite profiling, and terpenoid pathway engineering to identify the terpenoid-metabolic TF networks mediating stress responses in switchgrass, maize and sorghum. The work (proposal:https://doi.org/10.46936/10.25585/60001378) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.25345/c5hm52w55
title: MassIVE MSV000094092 - Anaerobic gut fungi are an untapped reservoir of natural products.
title: Anaerobic fungi (class Neocallimastigomycetes) thrive as low-abundance members of the herbivore digestive tract. The genomes of anaerobic gut fungi are poorly characterized and have not been extensively mined for the biosynthetic enzymes of natural products such as antibiotics. Here, we investigate the potential of anaerobic gut fungi to synthesize natural products that could regulate membership within the gut microbiome. Complementary 'omics' approaches were combined to catalog the natural products of anaerobic gut fungi from four different representative species: Anaeromyces robustus (A. robustus), Caecomyces churrovis (C. churrovis), Neocallimastix californiae (N. californiae), and Piromyces finnis (P. finnis). In total, 146 genes were identified that encode biosynthetic enzymes for diverse types of natural products, including nonribosomal peptide synthetases and polyketide synthases. In addition, N. californiae and C. churrovis genomes encoded seven putative bacteriocins, a class of antimicrobial peptides typically produced by bacteria. During standard laboratory growth on plant biomass or soluble substrates, 26% of total core biosynthetic genes in all four strains were transcribed. Across all four fungal strains, 30% of total biosynthetic gene products were detected via proteomics when grown on cellobiose. Liquid chromatography-tandem mass spectrometry (LC-MS/MS) characterization of fungal supernatants detected 72 likely natural products from A. robustus alone. A compound produced by all four strains of anaerobic fungi was putatively identified as the polyketide-related styrylpyrone baumin. Molecular networking quantified similarities between tandem mass spectrometry (MS/MS) spectra among these fungi, enabling three groups of natural products to be identified that are unique to anaerobic fungi. Overall, these results support the finding that anaerobic gut fungi synthesize natural products, which could be harnessed as a source of antimicrobials, therapeutics, and other bioactive compounds. See publication: https://www.doi.org/10.1073/pnas.2019855118. This research was performed under the Facilities Integrating Collaborations for User Science (FICUS) program (proposal:https://doi.org/10.46936/fics.proj.2018.50386/60000039) and used resources at the DOE Joint Genome Institute (https://ror.org/04xm1d337) and the Environmental Molecular Sciences Laboratory (https://ror.org/04rc0xn13), which are DOE Office of Science User Facilities operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL).
DOI: 10.6084/m9.figshare.25222778
title: erl

description: The data that support the findings of the study in https://doi.org/10.1088/1748-9326/ad281f
DOI: 10.6084/m9.figshare.25222778.v1
title: erl

description: The data that support the findings of the study in https://doi.org/10.1088/1748-9326/ad281f
DOI: 10.34740/kaggle/dsv/7627465
title: WallStreetBets 2022
DOI: 10.5281/zenodo.10660114
title: Raw Data of DFT Calculations and HPLC studies

description: Raw data that accompanies the manuscript, ci-2024-00085k (Journal of Chemistry and Information Modeling) DFT2 calculations and HPLC studies.
DOI: 10.5281/zenodo.10660115
title: Raw Data of DFT Calculations and HPLC studies

description: Raw data that accompanies the manuscript, ci-2024-00085k (Journal of Chemistry and Information Modeling) DFT2 calculations and HPLC studies.
DOI: 10.21227/87d5-kd86
title: Abnormality in chicken tissue (breast and thigh)

description: Manual palpation of organs played a vital role in detecting abnormalities in open surgeries. However, surgeonshave lost this ability with the development of minimally invasive surgeries. This challenge led to the development of artificial sensors for palpating the patient's organs and tissue. The majority of research done is related to improving the measurement of tissue compliance by the development of versatile force sensors for surgicalgraspers. However, depending on the abnormality, different types of sensors could be helpful on surgical graspers. We placed sensors on the tip of the motorized surgical grasper. These include acoustic, temperature, pressure sensors, and the encoder's reading. An acoustic sensor is a piezo element that excites at a 3MHz oscillation frequency, and a TDC1000 system on the chip drives it; the data is collected with an Analog Discovery 2.0 portable oscilloscope. The temperature sensor is a thermistor working together with the Wheatstone Bridge. The pressure sensor is for in-direct force measurement of surgical grasper's jaws closure. The thickness of chicken tissue is measured with the encoder's readings. The Experiment:The chicken breast and thigh were cut into ten pieces, and the motorized surgical robot Smart Grasper grasped each piece ten times. Then, small metal disks were placed inside these pieces, and the experiment was repeated. The data contains time series data for four classes: chicken breast, chicken thigh, chicken breast with abnormality (metal part), and chicken thigh with abnormality (metal part).
DOI: 10.6084/m9.figshare.25222772
title: xiezhi_zhuanluzu_20231026_new.rar

description: A unique new species,<i> Oreocharis scutifolia </i>Z. Xie, Miao Zhang & H. H. Kong, endemic to the Dry and Hot Valley of Jinsha River Basin, Yunnan, China, is described and illustrated here. It is similar to <i>O. cordatula</i> (Craib) Pellegr. and <i>O. aurantiaca</i> Baill. in some morphological characters, but differs in its unique peltate, ovate to oblong leaf blades with emarginated apex, places and types of indumentum, length of peduncles and corolla, also have significant differences in these species. Molecular phylogenetic analysis based on transcriptome data strongly supported <i>O. scutifolia</i> as a new species, while it forms a sister group with <i>O. henryana</i> Oliv., <i>O. cordatula</i> (Craib) Pellegr., <i>O. minor</i> Pellegr. and <i>O. aurantiaca</i> Baill. (ML = 100). Due to its tiny population, narrow distribution range, and the serious threat from human activities, invasive plants and damaged habitat, the new species is assessed as "critically endangered" following the IUCN categories and criteria. Here, we are willing to introduce a dataset consisting of 125 samples, including 6 species from Gesneriaceae as outgroups of the genus <i>Oreocharis</i> and 119 members of the same genus. This dataset is provided as supplementary material to the nature notes "<i>Oreocharis scutifolia</i> (Gesneriaceae) , a unique new species from the Dry and Hot Valley of Jinsha River Basin, Yunnan, China" submitted to <i>Ecology and Evolution</i>.
DOI: 10.6084/m9.figshare.25222772.v1
title: xiezhi_zhuanluzu_20231026_new.rar

description: A unique new species,<i> Oreocharis scutifolia </i>Z. Xie, Miao Zhang & H. H. Kong, endemic to the Dry and Hot Valley of Jinsha River Basin, Yunnan, China, is described and illustrated here. It is similar to <i>O. cordatula</i> (Craib) Pellegr. and <i>O. aurantiaca</i> Baill. in some morphological characters, but differs in its unique peltate, ovate to oblong leaf blades with emarginated apex, places and types of indumentum, length of peduncles and corolla, also have significant differences in these species. Molecular phylogenetic analysis based on transcriptome data strongly supported <i>O. scutifolia</i> as a new species, while it forms a sister group with <i>O. henryana</i> Oliv., <i>O. cordatula</i> (Craib) Pellegr., <i>O. minor</i> Pellegr. and <i>O. aurantiaca</i> Baill. (ML = 100). Due to its tiny population, narrow distribution range, and the serious threat from human activities, invasive plants and damaged habitat, the new species is assessed as "critically endangered" following the IUCN categories and criteria. Here, we are willing to introduce a dataset consisting of 125 samples, including 6 species from Gesneriaceae as outgroups of the genus <i>Oreocharis</i> and 119 members of the same genus. This dataset is provided as supplementary material to the nature notes "<i>Oreocharis scutifolia</i> (Gesneriaceae) , a unique new species from the Dry and Hot Valley of Jinsha River Basin, Yunnan, China" submitted to <i>Ecology and Evolution</i>.
DOI: 10.6084/m9.figshare.24882312
title: 源数据文件 .zip

description: 基于消费的碳排放
DOI: 10.5281/zenodo.10662636
title: Sodium ion supply rate at different TAA

description: Sodium ion supply rate at different TAA (belonging to the JGR Space paper entitled "Dynamics of Sputtered Neutral Sodium Atoms in the near-Mercury Space")
DOI: 10.5281/zenodo.10662637
title: Sodium ion supply rate at different TAA

description: Sodium ion supply rate at different TAA (belonging to the JGR Space paper entitled "Dynamics of Sputtered Neutral Sodium Atoms in the near-Mercury Space")
DOI: 10.6084/m9.figshare.25217828
title: Maternal care under large clutches with small eggs: The evolution of life history traits in shield bugs

description: We examined evolutionary associations between parental care and other life-history traits, female body size, egg size, clutch size, reproductive output and developmental period of eggs and hatchlings, in shield bugs using phylogenetic generalized least squares (PGLS) models in the phylolm package for R.Then, the pattern of evolutionary transitions among character states, parental care and egg size, clutch size or reproductive output, was examined using the Discrete dependent model implemented in BayesTraits.Our analyses revealed that female body size affected reproductive resource allocation. Contrary to the expectations of current theories, the acquisition of maternal care was associated with small eggs, large clutches, and large egg-resource allocation.There was a greater trade-off between egg size and clutch size in caring species than in non-caring species.Egg and hatchling developmental rates were not correlated with egg size, but were slower in caring species than in non-caring species.Analyses of evolutionary transitions suggest that the establishment of large clutches, small eggs and large egg-resource allocation preceded the evolution of maternal care.
DOI: 10.3886/e100441v1-146212
title: Occupational Safety and Health Administration (OSHA) Enforcement Data

description: The dataset consists of inspection case detail for approximately 100,000 OSHA inspections conducted annually. The dataset includes information regarding the impetus for conducting the inspection, and details on citations and penalty assessments resulting from violations of OSHA standards. Additionally, accident investigation information is provided, including textual descriptions of the accident, and details regarding the injuries and fatalities which occurred.
description: OSHA inspections conducted between 1970 and 2010. Smallest Geographic Unit: zip code
description: record abstracts;
DOI: 10.14279/depositonce-19855
title: Anhang zum Abschlussbericht des Projektes „Reallabor Zirkuläres Wirtschaften im urbanen Raum: Kompetenzaufbau und Umweltkommunikation im „Haus der Materialisierung“ in Berlin“

description: Auswahl von aussagekräftigen Fotos und Dokumenten für das Projekt „Reallabor Zirkuläres Wirtschaften im urbanen Raum: Kompetenzaufbau und Umweltkommunikation im „Haus der Materialisierung“ in Berlin“ Das Projekt „Reallabor Zirkuläres Wirtschaften im urbanen Raum: Kompetenzaufbau und Umweltkommunikation im „Haus der Materialisierung“ in Berlin“ wurde fachlich und finanziell gefördert durch die Deutsche Bundesstiftung Umwelt
DOI: 10.21227/w5w1-9n17
title: MOT result

description: This data is presented to showcase the experimental results related to the experiments conducted in our paper. Our paper introduces a multi-object tracking algorithm, which has been evaluated on the test sets of the MOT17, MOT20, and HiEve datasets.

Joint-Detection-and-Embedding paradigm achieves fast tracking by simultaneously learning detection and Re-ID features. However, it still faces performance degradation in complex scenes and the misalignment between detection and Re-ID features. In this paper, we propose a decoupling module based on channel-wise attention mechanism to obtain task-aligned features served for different demands of detection and Re-ID. To improve the performance of data association, we fuse motion, location, appearance information and perform a two-round matching for high and low confidence detections respectively by the Motion-GIoU matrix and the Embedding-GIoU matrix. Additionally, we apply the camera motion compensation to get a more accurate motion estimation, resulting in a more robust tracking in the scenes of camera motion and low-frame-rate. Extensive experiments show that our proposed method outperforms a wide range of existing methods on the MOTChallenge and HiEvE datasets.
DOI: 10.34740/kaggle/dsv/7627597
title: Sneaker 899-Classification total-50,000-Images
DOI: 10.5281/zenodo.7773728
title: Dataset for "Future projections for the Antarctic ice sheet until the year 2300 with a climate-index method"

description: Dataset for the manuscript "Future projections for the Antarctic ice sheet until the year 2300 with a climate-index method" (submitted to Journal of Glaciology, preprint at EarthArXiv, doi: 10.31223/X5F06Q). Please see the README for details. * * * * * * * The following script may be used to download the entire content of the archive on a Unix/Linux system: #!/bin/bash<br> # --- download_all.sh ---<br> repodir="https://zenodo.org/record/7773728/files"<br> files=("_README.pdf" \<br> "all_scalar.zip" \<br> "hist.zip" "ctrl_proj_ext.zip" \<br> "exp05_ext.zip" "exp06_ext.zip" "exp07_ext.zip" "exp08_ext.zip" \<br> "exp09_ext.zip" "exp10_ext.zip" "exp12_ext.zip" "exp13_ext.zip" \<br> "expA05_ext.zip" "expA06_ext.zip" "expA07_ext.zip" "expA08_ext.zip" \<br> "expB06_ext.zip" "expB07_ext.zip" "expB08_ext.zip" \<br> "expB09_ext.zip" "expB10_ext.zip")<br> for file in ${files[@]}; do<br> wget "${repodir}/${file}"<br> done<br> echo "--- Done! ---"
description: Funding acknowledgements: Japan Society for the Promotion of Science (JSPS) KAKENHI Grant Nos. JP17H06104 and JP17H06323. JSPS Grant-in-Aid for Japan-France Integrated Action Program (SAKURA Program) No. JPJSBP120213203.
DOI: 10.6084/m9.figshare.25222883
title: Raw data, laminar fMRI in locked-in stage ALS

description: Submillimeter resolution fMRI dataset during attempted and passive finger movements in a locked-in stage ALS patient.
DOI: 10.5281/zenodo.5880518
title: Dataset for "Mass loss of the Greenland ice sheet until the year 3000 under a sustained late-21st-century climate"

description: Dataset for the paper "Mass loss of the Greenland ice sheet until the year 3000 under a sustained late-21st-century climate" (Journal of Glaciology, in press). Please see the README for details. V1: Initial upload. * * * * * * * The following script may be used to download the content of the archive on a UNIX/Linux system: #!/bin/bash<br> wget https://zenodo.org/record/5880518/files/_README.pdf<br> wget https://zenodo.org/record/5880518/files/run_specs_headers.zip<br> for aexp in hist ctrl_proj_long \<br> exp05_long exp06_long exp07_long exp08_long exp09_long exp10_long \<br> expa01_long expa02_long expa03_long \<br> expb01_long expb02_long expb03_long expb04_long expb05_long; do<br> wget https://zenodo.org/record/5880518/files/${aexp}.zip<br> done
description: Funding acknowledgements: Ralf Greve and Christopher Chambers were supported by Japan Society for the Promotion of Science (JSPS) KAKENHI Grant No. JP17H06323, and by a Leadership Research Grant (Category 2) of Hokkaido University's Institute of Low Temperature Science. Ralf Greve was supported by JSPS KAKENHI Grant No. JP17H06104, and by the Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT) through the Arctic Challenge for Sustainability project ArCS II (program grant number JPMXD1420318865).
DOI: 10.5281/zenodo.5976160
title: Dataset for "Mass loss of the Greenland ice sheet until the year 3000 under a sustained late-21st-century climate"

description: Dataset for the paper "Mass loss of the Greenland ice sheet until the year 3000 under a sustained late-21st-century climate" (Journal of Glaciology, in press). Please see the README for details. V1.1: Scalar flux variable 'dlimdt' (total ice mass change) added. README updated.<br> V1: Initial upload. * * * * * * * The following script may be used to download the entire content of the archive on a Unix/Linux system: #!/bin/bash<br> # --- download_all.sh ---<br> wget https://zenodo.org/record/5976160/files/_README.pdf<br> wget https://zenodo.org/record/5976160/files/run_specs_headers.zip<br> for aexp in hist ctrl_proj_long \<br> exp05_long exp06_long exp07_long exp08_long exp09_long exp10_long \<br> expa01_long expa02_long expa03_long \<br> expb01_long expb02_long expb03_long expb04_long expb05_long; do<br> wget https://zenodo.org/record/5976160/files/${aexp}.zip<br> done
description: Funding acknowledgements: Ralf Greve and Christopher Chambers were supported by Japan Society for the Promotion of Science (JSPS) KAKENHI Grant No. JP17H06323, and by a Leadership Research Grant (Category 2) of Hokkaido University's Institute of Low Temperature Science. Ralf Greve was supported by JSPS KAKENHI Grant No. JP17H06104, and by the Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT) through the Arctic Challenge for Sustainability project ArCS II (program grant number JPMXD1420318865).
DOI: 10.5281/zenodo.10662657
title: Dataset  of 'Field Line Curvature (FLC) Scattering in the Dayside Off-Equatorial Minima Regions'

description: The data used for each figure in the paper ('Field Line Curvature (FLC) Scattering in the Dayside Off-Equatorial Minima Regions') are publicly available.
DOI: 10.5281/zenodo.10662656
title: Dataset  of 'Field Line Curvature (FLC) Scattering in the Dayside Off-Equatorial Minima Regions'

description: The data used for each figure in the paper ('Field Line Curvature (FLC) Scattering in the Dayside Off-Equatorial Minima Regions') are publicly available.
DOI: 10.5281/zenodo.4671332
title: Dataset for "Reduced ice loss from Greenland under stratospheric aerosol injection"

description: Dataset for the manuscript "Reduced ice loss from Greenland under stratospheric aerosol injection" (submitted to Journal of Geophysical Research: Earth Surface).


Please see the README for details.


V0.9.1: Crucial bug fix in the files ElmerIce_MIROC-ESM-CHEM-{RCP85,RCP45,G4}_2D_final.nc (those in V0.9 were faulty).
V0.9: Scalar variables: now distinguished between state and flux variables. 2D variables added.
V0.5: Scalar variables as functions of time.
description: Funding acknowledgements: National Key Research and Development Program of China (2018YFC1406104); National Basic Research Program of China (2016YFA0602701); Finnish Academy COLD consortium grant 322430; Japan Society for the Promotion of Science (JSPS) KAKENHI Grant Numbers JP16H02224 and JP17H06104; Arctic Challenge for Sustainability projects (ArCS, ArCS II) of the Japanese MEXT (program grant numbers JPMXD1300000000, JPMXD1420318865); Hokkaido University Foreign Visiting Professorship at the Institute of Low Temperature Science; Leadership Research Grant of Hokkaido University's Institute of Low Temperature Science.
DOI: 10.5281/zenodo.8071794
title: Dataset for "Reduced ice loss from Greenland under stratospheric aerosol injection"

description: Dataset for the paper "Reduced ice loss from Greenland under stratospheric aerosol injection" (submitted to Journal of Geophysical Research: Earth Surface).


Please see the README for details.


V1.1: Scripts related to the ISIMIP-method downscaling, SEMIC code, as well as configuration and input files for SICOPOLIS and Elmer/Ice added.
V1: Results of new simulations that include both atmospheric and oceanic forcing.
V0.9.1: Crucial bug fix in the files ElmerIce_MIROC-ESM-CHEM-{RCP85,RCP45,G4}_2D_final.nc (those in V0.9 were faulty).
V0.9: Scalar variables: now distinguished between state and flux variables. 2D variables added.
V0.5: Scalar variables as functions of time.


* * * * * * *


The following script may be used to download the entire content of the archive on a Unix/Linux system:


#!/bin/bash
# --- download_all.sh ---
repodir="https://zenodo.org/record/8071794/files"
files=("_README.pdf" \
       "Output_SICOPOLIS_Scalar.zip" "Output_ElmerIce_Scalar.zip" \
       "Output_SICOPOLIS_2D.zip" "Output_ElmerIce_2D.zip" \
       "Repo_ISIMIP_downscale.zip" "Repo_SEMIC.zip" \
       "Repo_SICOPOLIS.zip" "Repo_ElmerIce.zip")
for file in ${files[@]}; do
    wget "${repodir}/${file}"
done
echo "--- Done! ---"


 
description: Funding acknowledgements: National Key Research and Development Program of China (2018YFC1406104); National Basic Research Program of China (2016YFA0602701); Finnish Academy COLD consortium grant 322430; Japan Society for the Promotion of Science (JSPS) KAKENHI Grant Numbers JP16H02224 and JP17H06104; Arctic Challenge for Sustainability projects (ArCS, ArCS II) of the Japanese MEXT (program grant numbers JPMXD1300000000, JPMXD1420318865); Hokkaido University Foreign Visiting Professorship at the Institute of Low Temperature Science; Leadership Research Grant of Hokkaido University's Institute of Low Temperature Science.
DOI: 10.5281/zenodo.4131583
title: Dataset for "Reduced ice loss from Greenland under stratospheric aerosol injection"

description: Dataset for the manuscript "Reduced ice loss from Greenland under stratospheric aerosol injection".


Please see the README for details.


V0.5: Scalar variables as functions of time.
DOI: 10.5281/zenodo.4255618
title: Dataset for "Reduced ice loss from Greenland under stratospheric aerosol injection"

description: Dataset for the manuscript "Reduced ice loss from Greenland under stratospheric aerosol injection" (submitted to Geophysical Research Letters).


Please see the README for details.


V0.9: Scalar variables: now distinguished between state and flux variables. 2D variables added.
V0.5: Scalar variables as functions of time.
description: Funding acknowledgements: National Key Research and Development Program of China (2018YFC1406104); National Basic Research Program of China (2016YFA0602701); Finnish Academy COLD consortium grant 322430; Japan Society for the Promotion of Science (JSPS) KAKENHI Grant Numbers JP16H02224 and JP17H06104; Arctic Challenge for Sustainability projects (ArCS, ArCS II) of the Japanese MEXT (program grant number JPMXD1300000000); Hokkaido University Foreign Visiting Professorship at the Institute of Low Temperature Science; Leadership Research Grant of Hokkaido University's Institute of Low Temperature Science.