cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.7mv7v
title: Data from: 1970s and ‘Patient 0’ HIV-1 genomes illuminate early HIV/AIDS history in North America

description: The emergence of HIV-1 group M subtype B in North American men who have
 sex with men was a key turning point in the HIV/AIDS pandemic.
 Phylogenetic studies have suggested cryptic subtype B circulation in the
 United States (US) throughout the 1970s1, 2 and an even older presence in
 the Caribbean2. However, these temporal and geographical inferences, based
 upon partial HIV-1 genomes that postdate the recognition of AIDS in 1981,
 remain contentious3, 4 and the earliest movements of the virus within the
 US are unknown. We serologically screened &gt;2,000 1970s serum
 samples and developed a highly sensitive approach for recovering viral RNA
 from degraded archival samples. Here, we report eight coding-complete
 genomes from US serum samples from 1978–1979—eight of the nine oldest
 HIV-1 group M genomes to date. This early, full-genome ‘snapshot’ reveals
 that the US HIV-1 epidemic exhibited extensive genetic diversity in the
 1970s but also provides strong evidence for its emergence from a
 pre-existing Caribbean epidemic. Bayesian phylogenetic analyses estimate
 the jump to the US at around 1970 and place the ancestral US virus in New
 York City with 0.99 posterior probability support, strongly suggesting
 this was the crucial hub of early US HIV/AIDS diversification. Logistic
 growth coalescent models reveal epidemic doubling times of 0.86 and 1.12
 years for the US and Caribbean, respectively, suggesting rapid early
 expansion in each location3. Comparisons with more recent data reveal many
 of these insights to be unattainable without archival, full-genome
 sequences. We also recovered the HIV-1 genome from the individual known as
 ‘Patient 0’ (ref. 5) and found neither biological nor historical evidence
 that he was the primary case in the US or for subtype B as a whole. We
 discuss the genesis and persistence of this belief in the light of these
 evolutionary insights.
description: .zip
 archivePrimers, alignments,
 BEAST xml input files, and results filesdataDryad.zip
DOI: 10.34810/data1282
title: Partitura i enregistrament de "Pastorela por Navidad" Joaquim Laposaria Alsina (1778-1839) [fray Joaquín de Jesús María y José]

description: Sota el marc del projecte Estudi i Recuperació de Patrimoni Musical, aquest dataset conté dos arxius: 
&lt;br&gt; Transcripció del manuscrit original de Joaquim Laposaria
Alsina
&lt;br&gt; Enregistrament de la peça interpretada per: 
&lt;br&gt;- Javier Artigas, orgue. Orgue històric de l'església de la Asunción de
Cardenete, construït el 1767.
DOI: 10.5061/dryad.3045r
title: Data from: Different ultimate factors define timing of breeding in two related species

description: Correct reproductive timing is crucial for fitness. Breeding phenology
 even in similar species can differ due to different selective pressures on
 the timing of reproduction. These selection pressures define species’
 responses to warming springs. The temporal match-mismatch hypothesis
 suggests that timing of breeding in animals is selected to match with food
 availability (synchrony). Alternatively, time-dependent breeding success
 (the date hypothesis) can result from other seasonally deteriorating
 ecological conditions such as intra- or interspecific competition or
 predation. We studied the effects of two ultimate factors on the timing of
 breeding, synchrony and other time-dependent factors (time-dependence), in
 sympatric populations of two related forest-dwelling passerine species,
 the great tit (Parus major) and the willow tit (Poecile montanus) by
 modelling recruitment with long-term capture-recapture data. We
 hypothesized that these two factors have different relevance for fitness
 in these species. We found that local recruitment in both species showed
 quadratic relationships with both time-dependence and synchrony. However,
 the importance of these factors was markedly different between the studied
 species. Caterpillar food played a predominant role in predicting the
 timing of breeding of the great tit. In contrast, for the willow tit
 time-dependence modelled as timing in relation to conspecifics was more
 important for local recruitment than synchrony. High caterpillar biomass
 experienced during the pre- and post-fledging periods increased local
 recruitment of both species. These contrasting results confirm that these
 species experience different selective pressures upon the timing of
 breeding, and hence responses to climate change may differ. Detailed
 information about life-history strategies is required to understand the
 effects of climate change, even in closely related taxa. The temporal
 match-mismatch hypothesis should be extended to consider subsequent
 critical periods when food needs to be abundantly available.
description: TIT DATA_PAKANEN ET
 ALCapture-recapture data
 with individual covariates.
DOI: 10.5061/dryad.30ns8
title: Data from: Maternal stress has divergent effects on gene expression patterns in the brains of male and female threespine stickleback

description: Maternal stress can have long-term effects on neurodevelopment that can
 influence offspring performance and population evolutionary trajectories.
 To examine the mechanistic basis for these neurodevelopmental effects of
 maternal stress, we used RNA-seq to assess differential gene expression
 across the brain transcriptome of adult male and female threespine
 stickleback (Gasterosteus aculeatus) from stressed and unstressed mothers.
 We identified sexually divergent effects of maternal stress on the brain
 transcriptome. In males, genes that were up-regulated by maternal stress
 were enriched for processes involved in synaptic function and organization
 and steroid hormone mediated signaling pathways, whereas in females genes
 that were up-regulated by maternal stress were enriched for processes
 involved in protein translation and metabolic functions. The expression of
 several genes involved in the hypothalamic-pituitary-interrenal response
 to stress and epigenetic processes such as the regulation of DNA
 methylation patterns and miRNAs increased in males and not in females.
 These data suggest that maternal stress has markedly different effects on
 cellular pathways in the brains of male and female offspring of mothers
 that are exposed to stress, which could have important implications when
 assessing the long-term ecological and evolutionary impacts of stress
 across generations.
description: CLC_Alignment_Read_Counts.csvTotal read counts per transcript for each sample from CLC alignment. UM = male from unstressed mother, UF = female from unstressed mother, SM = male from stressed mother, SF = female from stressed mother.SticklebackMaternalStress.csv
DOI: 10.6084/m9.figshare.31157572
title: Gesture use and Language meta data

description: Gestures are a foundational component of early communication and have been consistently linked to language development in children with autism spectrum disorder (ASD). However, existing studies report inconsistent effect sizes regarding this relationship, and the sources of such heterogeneity remain unclear. To address this issue, the present study employs a three-level meta-analysis to systematically examine the association between gesture use and language development in children with ASD and to identify potential moderators. Through a systematic literature search and selection process, eligible studies were included, comprising a sample of children with ASD. This study aims to elucidate the overall strength of the association between gesture use and language development and to further examine whether factors such as gesture type, child age, and language measurement tools moderate this relationship. The findings are expected to deepen the understanding of the role of gestures in language development among children with ASD and to provide a theoretical basis for related intervention practices.
DOI: 10.6084/m9.figshare.31157572.v1
title: Gesture use and Language meta data

description: Gestures are a foundational component of early communication and have been consistently linked to language development in children with autism spectrum disorder (ASD). However, existing studies report inconsistent effect sizes regarding this relationship, and the sources of such heterogeneity remain unclear. To address this issue, the present study employs a three-level meta-analysis to systematically examine the association between gesture use and language development in children with ASD and to identify potential moderators. Through a systematic literature search and selection process, eligible studies were included, comprising a sample of children with ASD. This study aims to elucidate the overall strength of the association between gesture use and language development and to further examine whether factors such as gesture type, child age, and language measurement tools moderate this relationship. The findings are expected to deepen the understanding of the role of gestures in language development among children with ASD and to provide a theoretical basis for related intervention practices.
DOI: 10.5061/dryad.v1jr7
title: Data from: Current and projected global distribution of Phytophthora cinnamomi, one of the world’s worst plant pathogens

description: Globally, Phytophthora cinnamomi is listed as one of the 100 worst
 invasive alien species and active management is required to reduce impact
 and prevent spread in both horticulture and natural ecosystems.
 Conversely, there are regions thought to be suitable for the pathogen
 where no disease is observed. We developed a CLIMEX model for the global
 distribution of P. cinnamomi based on the pathogen's response to
 temperature and moisture and by incorporating extensive empirical evidence
 on the presence and absence of the pathogen. The CLIMEX model captured
 areas of climatic suitability where P. cinnamomi occurs that is congruent
 with all available records. The model was validated by the collection of
 soil samples from asymptomatic vegetation in areas projected to be
 suitable by the model for which there were few records. DNA was extracted
 and the presence or absence of P. cinnamomi determined by high throughput
 sequencing (HTS). While not detected using traditional isolation methods,
 HTS detected P. cinnamomi at higher elevations in eastern Australia and
 central Tasmania as projected by the CLIMEX model. Further support for the
 CLIMEX model was obtained by using the large dataset from southwest
 Australia where the proportion of positive records in an area is related
 to the Ecoclimatic Index value for the same area. We provide for the first
 time a comprehensive global map of the current P. cinnamomi distribution,
 an improved CLIMEX model of the distribution, and a projection to 2080 of
 the distribution with predicted climate change. This information provides
 the basis for more detailed regional scale modelling and supports risk
 assessment for governments to plan management of this important soil-borne
 plant pathogen.
description: WORLDPhytophthora cinnamomi
 records used in model (ex-Australia)QLDPhytophthora cinnamomi
 records used in model from Queensland, AustraliaVICPhytophthora cinnamomi
 records used in model from Victoria, AustraliaTASPhytophthora cinnamomi
 records used in model from Tasmania, AustraliaNSWNew South Wales,
 AustraliaAUSTRALIA
 ADDPdata used from
 Australian Plant Pest Database
DOI: 10.5061/dryad.v8rq0
title: Data from: Accumulation of deleterious mutations on the neo-Y chromosome of Japan sea stickleback (Gasterosteus nipponicus)

description: Degeneration of Y chromosomes is a common evolutionary path of XY sex
 chromosome systems. Recent genomic studies in flies and plants have
 revealed that even young neo-sex chromosomes with the age of a few million
 years show signs of Y degeneration, such as the accumulation of nonsense
 and frameshift mutations. However, it remains unclear whether neo-Y
 chromosomes also show rapid degeneration in fishes, which often have
 homomorphic sex chromosomes. Here, we investigated whether a neo-Y
 chromosome of Japan Sea stickleback (Gasterosteus nipponicus), which was
 formed by a Y-autosome fusion within the last 2 million years, accumulates
 deleterious mutations. Our previous genomic analyses did not detect excess
 nonsense and frameshift mutations on the Japan Sea stickleback neo-Y. In
 the present study, we found that the nonrecombining region of the neo-Y
 near the fusion end has accumulated nonsynonymous mutations altering amino
 acids of evolutionarily highly conserved residues. Enrichment of gene
 ontology terms related to protein phosphorylation and cellular protein
 modification process was found in the genes with potentially deleterious
 mutations on the neo-Y. These results suggest that the neo-Y of the Japan
 Sea stickleback has already accumulated mutations that may impair protein
 functions.
description: List of deleterious
 SNPsList_of_deleterious_mutations.zip
DOI: 10.15468/dl.hjws7t
title: Occurrence Download

description: A dataset containing 1428 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum lasiocarpum"
 ]
}

 The dataset includes 1428 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001473-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.n358r
title: Data from: Cohort variation in individual body mass dissipates with age in large herbivores

description: Environmental conditions experienced during early growth and development
 markedly shape phenotypic traits. Consequently, individuals of the same
 cohort may show similar life-history tactics throughout life. Conditions
 experienced later in life, however, could fine-tune these initial
 differences, either increasing (cumulative effect) or decreasing
 (compensatory effect) the magnitude of cohort variation with increasing
 age. Our novel comparative analysis that quantifies cohort variation in
 individual body size trajectories shows that initial cohort variation
 dissipates throughout life, and that lifetime patterns change both across
 species with different paces of life and between sexes. We used
 longitudinal data on body size (mostly assessed using mass) from 11
 populations of large herbivores spread along the “slow-fast” continuum of
 life histories. We first quantified cohort variation using mixture models
 to identify clusters of cohorts with similar initial size. We identified
 clear cohort clusters in all species except the one with the slowest pace
 of life, revealing that variation in early size is structured among
 cohorts and highlighting typological differences among cohorts. Growth
 trajectories differed among cohort clusters, highlighting how early size
 is a fundamental determinant of lifetime growth patterns. In all species,
 among-cohort variation in size peaked at the start of life, then quickly
 decreased with age and stabilized around mid-life. Cohort variation was
 lower in species with a slower than a faster pace of life, and vanished at
 prime age in species with the slowest pace of life. After accounting for
 viability selection, compensatory/catch-up growth in early life explained
 much of the decrease in cohort variation. Females showed less phenotypic
 variability and stronger compensatory/catch-up growth than males early in
 life, whereas males showed more progressive changes throughout life. These
 results confirm that stronger selective pressures for rapid growth make
 males more vulnerable to poor environmental conditions early in life and
 less able to recover after a poor start. Our comparative analysis
 illustrates how variability in growth changes over time in closely related
 species that span a wide range on the “slow-fast” continuum, the main axis
 of variation in life-history strategies of vertebrates.
description: All
 dataData collected in the
 field. Id, identity of individuals; body size in kg except for elephants,
 height in cm; reproductive status of females where "no" is no
 offspring and "yes" is offspring produced; twin, if an
 individual is a twin "yes" or not "no"; mother
 primiparity is whether or not the individual was born from primiparous
 mother "yes" or not "no".all_data_FINAL for
 dryad.txt
DOI: 10.15468/dl.sj8wfj
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kazakhstan",
 "TaxonKey is Ferula ferulaeoides"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001474-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2wsha6
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blythophryne"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001471-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q36g7u
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Plectrocarpa Gillies ex Hook. & Arn."
 ]
}

 The dataset includes 132 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013770-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yus4bw
title: Occurrence Download

description: A dataset containing 7023 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Indonesia",
 "TaxonKey is Shorea Roxb."
 ]
}

 The dataset includes 7023 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013768-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17621/uebergangspanel
title: Übergangspanel 2004-2006

description: Jugendliche im Übergang, I-III
DOI: 10.48443/5ts2-rc92
title: Discrete return LiDAR point cloud (DP1.30003.001)
title: RELEASE-2026

description: The NEON AOP Discrete Return Light Detection and Ranging (LiDAR) Point Cloud is provided in a compressed American Society for Photogrammetry and Remote Sensing (ASPRS) LAS format (LAZ), referenced to a UTM map projection and ITRF00 datum horizontally and NAVD88 (Geoid12A realization) vertically. It provides the X, Y, Z coordinates and intensity for each laser return point. AOP discrete LiDAR is collected at several points per square meter, and each point can have multiple returns. L1 LiDAR point clouds are distributed in their original flight lines with one flight line per file which are unclassified, as well as classified 1 km by 1 km tiles.

Latency:
AOP data will be available 60 days after the final collection day at a site.
description: LiDAR point cloud data products are derived from NEON Airborne Observation Platform (AOP) LiDAR data collected in North-South oriented flight lines. These data are processed to orthorectified point clouds and distributed in ASPRS LAS standard format. Instrumentation: NEON Airborne Observation Platform (AOP) LiDAR - Optech Gemini
DOI: 10.48443/4xdv-a303
title: Temperature (PRT) in surface water (DP1.20053.001)
title: RELEASE-2026

description: This data product contains quality-controlled continuous surface water temperature readings from a sensor within each of NEON's wade-able stream sensor sets.

Latency:
Data collected in any given month are published during the second full week of the following month.
description: Surface water temperature is measured using a platinum resistance thermometer that acquires resistance readings at 1 Hz. NEON coverts the raw resistance data product into temperature and reports at 1 minute intervals. Instrumentation: Thermometrics -- R032-00000048
DOI: 10.48443/jk7y-sp94
title: Aquatic plant bryophyte macroalgae clip harvest (DP1.20066.001)
title: RELEASE-2026

description: This data product contains the quality-controlled, field sampling metadata and associated taxonomic and biomass data for aquatic plants, bryophytes, and macroalgae. Field samples are collected in wadeable streams, rivers, and lakes, and processed at the domain support facility. Clip harvest samples are collected once per year during the mid-summer aquatic biological sampling bout. Additional presence/absence data are collected in lakes and rivers during bouts 1 and 3 (similar to point transect data for streams). During midsummer sampling, grab samples are collected from a known area, separated by taxon in the domain support facility, identified when possible, and processed for dry mass and ash-free dry mass. Specimens that cannot be identified with certainty are dried, pressed, and sent to an expert taxonomist. For additional details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage.

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.
 
apl_biomass:  60

apl_clipHarvest:  60

apl_taxonomyProcessed:  240

apl_taxonomyRaw:  240

apc_voucher: 30

apc_voucherTaxonomyProcessed: 240

apc_voucherTaxonomyRaw: 240

apc_morphospecies:  390

apl_identificationHistory: 7
description: Aquatic plant, bryophyte, and macroalgae clip harvest sampling is conducted once per year at wadeable streams (during the mid-summer aquatic biology window) and three times per year in rivers and lake sites. During the first and third bouts in rivers and lakes, only presence/absence of vegetation is noted. During the mid-summer bout, samples are collected via quadrats in wadeable streams, and rake collection in lakes and rivers. Ten samples are collected per site if plants are present. In wadeable streams, clip harvest samples are collected near plant transect locations. In lakes and rivers, ten randomly selected points are sampled at depths that are colonized by plants. These samples are partitioned into samples for analysis of ash-free dry mass and taxonomic identification. Instrumentation: