cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8193600
title: Modeled waver data for ML

description: The uploaded data are numerical model generated daily wave height, period, and wind frocings in the Chesapeake Bay. Data are used for the publication "Machine Learning-based Wave Model with High Spatial Resolution in Chesapeake Bay" submitted to the Journal for review.
DOI: 10.5281/zenodo.8193599
title: Modeled waver data for ML

description: The uploaded data are numerical model generated daily wave height, period, and wind frocings in the Chesapeake Bay. Data are used for the publication "Machine Learning-based Wave Model with High Spatial Resolution in Chesapeake Bay" submitted to the Journal for review.
DOI: 10.6084/m9.figshare.23802390.v1
title: Prosthetic Stiffness and Added Mass Affect Metabolic Power and Asymmetry in Female Runners with a Leg Amputation: Statistics and Corresponding Data

description: Data set including symmetry index values and individual leg values for biomechanical variables in female runners with a lower limb amputation, using a running-specific prosthesis. Variables include metabolic power, leg stiffness, contact time, stance-average and peak vertical ground reaction forces; collected while running at 2.5 meters per second. Includes statistical models used in the analysis.
DOI: 10.5281/zenodo.8193789
title: Dataset for use with "Closing the Gap: Achieving U.S. Climate Goals Beyond the Inflation Reduction Act"

description: Dataset for use with "Closing the Gap: Achieving U.S. Climate Goals Beyond the Inflation Reduction Act"
DOI: 10.5281/zenodo.8193788
title: Dataset for use with "Closing the Gap: Achieving U.S. Climate Goals Beyond the Inflation Reduction Act"

description: Dataset for use with "Closing the Gap: Achieving U.S. Climate Goals Beyond the Inflation Reduction Act"
DOI: 10.6073/pasta/1e286dce0fe357e55ba03c17f1ddfef7
title: Plant species composition in black sand extended growing season experiment, 2018 - ongoing.

description: As a result of climate change, the Rocky Mountain Front Range is experiencing warmer summers and earlier snowmelt. Due to the importance of snow for regulating soil temperature, growing season length, and available moisture in alpine ecosystems, even small shifts in the snow-free period could have large impacts. The focus of the Black Sand Extended Growing Season Length Experiment is to examine how terrain-related differences in climate exposure influence the way alpine habitats respond to climate change via earlier snowmelt. To simulate how climate exposure may affect plant communities, NWT LTER researchers established 5 experimental sites each containing a pair 10 x 40m rectangular plots. These sites include north and south facing aspects, subalpine and alpine tundra meadows in a range of hydrological conditions (e.g. dry meadows, moist meadows, wet meadows). We accelerated snowmelt in one plot of each block by adding chemically inert black sand, while keeping the second plot as an unmanipulated control; black sand was added to these plots after snow had naturally melted. This dataset includes measurements of plant species composition.
DOI: 10.25919/5620-wv75
title: Parkes observations for project P1162 semester 2023APRS_07

description: Pulsar timing is a powerful tool in studying pulsar physics. Discovering more exotic pulsar systems or timing pulsars with higher precision is an essential part of pulsar astronomy. As a recently discovered millisecond pulsar, PSR J1402+13 is an interesting source for follow-up timing observations. First, its apparent spin-down rate is the highest among known millisecond pulsars. This spin-down rate, if confirmed, will place stringent constraints on the spin-up process predicted by pulsar recycling theories. Second, and more importantly, preliminary analysis shows that J1402+13 is a very promising candidate for pulsar timing arrays, with an achievable precision at the level of 6 nanoseconds for 60 minutes observation with Parkes. We have observed J1402+13 for 8 times in the past two months and propose to continue the observations in the coming semester. We apply for another 14 hours to observe the pulsar to extend the timing baseline to one year. This project will derive an ephemeris of the system, which is valuable to understand its formation and evolution history. Furthermore, the observations will allow us to evaluate the timing performance of J1402+13 and its suitability to be included in pulsar timing arrays.
DOI: 10.25592/uhhfdm.13092
title: Datooga (DALGOM 2018f)

description: This data set contains a lexical and grammatical database interlinked with fully glossed and translated text transcripts in Toolbox format. The Datooga varieties documented are Barbayiiga and Gisamjanga. All data have been collected in the town of Haidom (Tanzania) in September 2018 as part of the DFG project “Datooga lexico-grammar of motion in a dialectological and historical perspective (DALGOM)” (KI 529/12-1).
description: Deutsche Forschungsgemeinschaft (KI 529/12-1)
DOI: 10.25592/uhhfdm.13091
title: Datooga (DALGOM 2018f)

description: This data set contains a lexical and grammatical database interlinked with fully glossed and translated text transcripts in Toolbox format. The Datooga varieties documented are Barbayiiga and Gisamjanga. All data have been collected in the town of Haidom (Tanzania) in September 2018 as part of the DFG project “Datooga lexico-grammar of motion in a dialectological and historical perspective (DALGOM)” (KI 529/12-1).
description: Deutsche Forschungsgemeinschaft (KI 529/12-1)
DOI: 10.25592/uhhfdm.13090
title: Datooga (DALGOM 2018e)

description: This data set contains transcripts of DALGOM2018b, DALGOM2018c and DALGOM2018d. The Datooga varieties documented are Barbayiiga and Gisamjanga. All data have been collected in the town of Haidom (Tanzania) in September 2018 as part of the DFG project “Datooga lexico-grammar of motion in a dialectological and historical perspective (DALGOM)” (KI 529/12-1).
description: Deutsche Forschungsgemeinschaft (KI 529/12-1)
DOI: 10.25592/uhhfdm.13089
title: Datooga (DALGOM 2018e)

description: This data set contains transcripts of DALGOM2018b, DALGOM2018c and DALGOM2018d. The Datooga varieties documented are Barbayiiga and Gisamjanga. All data have been collected in the town of Haidom (Tanzania) in September 2018 as part of the DFG project “Datooga lexico-grammar of motion in a dialectological and historical perspective (DALGOM)” (KI 529/12-1).
description: Deutsche Forschungsgemeinschaft (KI 529/12-1)
DOI: 10.25592/uhhfdm.13086
title: Datooga (DALGOM 2018d)

description: This data set contains the audio files of interviews conducted in Swahili for the elicitation of Datooga (Southern Nilotic) lexical and grammatical structures. The Datooga variety documented is Barbayiiga. All data have been collected in the town of Haidom (Tanzania) in September 2018 as part of the DFG project “Datooga lexico-grammar of motion in a dialectological and historical perspective (DALGOM)” (KI 529/12-1).
description: Deutsche Forschungsgemeinschaft (KI 529/12-1)
DOI: 10.25592/uhhfdm.13084
title: Datooga (DALGOM 2018c)

description: This data set contains the audio files of texts in the Barbayiiga variety of Datooga (Southern Nilotic). All data have been collected in the town of Haidom (Tanzania), in September 2018 as part of the DFG project “Datooga lexico-grammar of motion in a dialectological and historical perspective (DALGOM)” (KI 529/12-1).
description: Deutsche Forschungsgemeinschaft (KI 529/12-1)
DOI: 10.25592/uhhfdm.13085
title: Datooga (DALGOM 2018d)

description: This data set contains the audio files of interviews conducted in Swahili for the elicitation of Datooga (Southern Nilotic) lexical and grammatical structures. The Datooga variety documented is Barbayiiga. All data have been collected in the town of Haidom (Tanzania) in September 2018 as part of the DFG project “Datooga lexico-grammar of motion in a dialectological and historical perspective (DALGOM)” (KI 529/12-1).
description: Deutsche Forschungsgemeinschaft (KI 529/12-1)
DOI: 10.25592/uhhfdm.13083
title: Datooga (DALGOM 2018c)

description: This data set contains the audio files of texts in the Barbayiiga variety of Datooga (Southern Nilotic). All data have been collected in the town of Haidom (Tanzania), in September 2018 as part of the DFG project “Datooga lexico-grammar of motion in a dialectological and historical perspective (DALGOM)” (KI 529/12-1).
description: Deutsche Forschungsgemeinschaft (KI 529/12-1)
DOI: 10.25592/uhhfdm.13082
title: Datooga (DALGOM 2018b)

description: This data set contains the audio files of texts in the Gisamjanga variety of Datooga (Southern Nilotic). All data have been collected in the town of Haidom (Tanzania), in September 2018 as part of the DFG project “Datooga lexico-grammar of motion in a dialectological and historical perspective (DALGOM)” (KI 529/12-1).
description: Deutsche Forschungsgemeinschaft (KI 529/12-1)
DOI: 10.25592/uhhfdm.13081
title: Datooga (DALGOM 2018b)

description: This data set contains the audio files of texts in the Gisamjanga variety of Datooga (Southern Nilotic). All data have been collected in the town of Haidom (Tanzania), in September 2018 as part of the DFG project “Datooga lexico-grammar of motion in a dialectological and historical perspective (DALGOM)” (KI 529/12-1).
description: Deutsche Forschungsgemeinschaft (KI 529/12-1)
DOI: 10.25592/uhhfdm.13046
title: Datooga (DALGOM 2019d)

description: This data set contains the audio files of interviews conducted in Swahili for the elicitation of Datooga (Southern Nilotic) lexical and grammatical structures. The Datooga variety documented is Bureadiga. All data have been collected in the village of Chagana near Lugubu/Rugubu, Igunga (Tanzania), in April 2019 as part of the DFG project “Datooga lexico-grammar of motion in a dialectological and historical perspective (DALGOM)” (KI 529/12-1).
description: Deutsche Forschungsgemeinschaft (KI 529/12-1)
DOI: 10.25592/uhhfdm.13045
title: Datooga (DALGOM 2019d)

description: This data set contains the audio files of interviews conducted in Swahili for the elicitation of Datooga (Southern Nilotic) lexical and grammatical structures. The Datooga variety documented is Bureadiga. All data have been collected in the village of Chagana near Lugubu/Rugubu, Igunga (Tanzania), in April 2019 as part of the DFG project “Datooga lexico-grammar of motion in a dialectological and historical perspective (DALGOM)” (KI 529/12-1).
description: Deutsche Forschungsgemeinschaft (KI 529/12-1)
DOI: 10.6084/m9.figshare.23800287
title: Scaling behaviour and control of nuclear wrinkles

description: This repository contains some of the data presented in the article 'Scaling behaviour and control of nuclear wrinkles' by the same authors in Nature Physics (2023). For more details on the methods, see the accompanying manuscript.plotData_spreadsheets.zip contains the experimental data used in plots.figure_tifs.zip contains full-resolution tif versions of the images shown in the article and supplementary material.point_clouds.zip contains the point cloud coordinates extracted from the 3d microscopy images. The point clouds represent the location of GFP-tagged nuclear pore complexes, and as such are a reliable proxy to infer the spatial organization of the nuclear envelope of the imaged cells. The included MATLAB code processes those point clouds and represents them using scalar spherical harmonics, outputting MATLAB cell arrays containing the spherical harmonic coefficients along with other experimentally relevant information. To execute, open and run `wrinklesMain.m' in MATLAB. You can select which folder to process, where to place the output and more by modifying the code.The data is split into 4 folders:1. WT_allData_through2022-03-01 contains the wild-type data from a range of developmental stages.0pt5xOsmolarity contains the hypotonic shock data1pt5xOsmolarity contains the hypertonic shock dataallColchicine contains the data from the microtubule inhibition assays.For simulation code, we point to https://github.com/NicoRomeo/d3shell.
DOI: 10.5281/zenodo.8194027
title: weather-data

description: weather-data relies on datazimmer and the tooling of sscub
DOI: 10.5281/zenodo.8194026
title: weather-data

description: weather-data relies on datazimmer and the tooling of sscub
DOI: 10.6084/m9.figshare.22762076.v1
title: Supplemental Material

description: The SARS-CoV-2 spike protein is a highly immunogenic and mutable protein that is the target of vaccine prevention and antibody therapeutics. This makes the encoding S-gene an important sequencing target. The SARS-CoV-2 sequencing community overwhelmingly adopted tiling amplicon-based strategies for sequencing the entire genome. As the virus evolved, primer mismatches inevitably led to amplicon drop-out. Given the exposure of the spike protein to host antibodies, mutation occurred here most rapidly, leading to amplicon failure over the most insightful region of the genome. To mitigate this, we developed SpikeSeq, a targeted method to amplify and sequence the S-gene. We evaluated 20 distinct primer designs through iterative <i>in silico</i> and <i>in vitro</i> testing to select the optimal primer pairs and run conditions. Once selected, periodic <i>in silico</i> analysis monitor primer conservation as SARS-CoV-2 evolves. Despite being designed during the Beta wave, the selected primers remain &gt; 99% conserved through Omicron as of 2023-04-14. To validate the final design, we compared SpikeSeq data and National SARS-CoV-2 Strain Surveillance whole-genome data for 321 matching samples. Consensus sequences for the two methods were highly identical (99.998%) across the S-gene. SpikeSeq can serve as a complement to whole-genome surveillance or be leveraged where only S-gene sequencing is of interest. While SpikeSeq is adaptable to other sequencing platforms, the Nanopore platform validated here is compatible with low to moderate throughputs, and its simplicity better enables users to achieve accurate results, even in low resource settings.
DOI: 10.25919/yp7q-9p66
title: Parkes observations for project P595 semester 2023APRS_09

description: We propose to continue the PULSE@Parkes project in which high school students from Australia and around the World use the Parkes radio telescope in a remote observing model to observe and analyse pulsar data. The data from some PULSE@Parkes observations are used to support the space missions, other observations supplement the P456 Pulsar Timing Array project and the remainder were chosen in order to make a detailed analysis of pulsar timing irregularities and intermittency.
DOI: 10.5281/zenodo.8193242
title: Molecular and circuit determinants in the globus pallidus mediating control of cocaine-induced behavioral plasticity

description: The globus pallidus external segment (GPe) acts as a gatekeeper of initial cocaine-induced behavioral plasticity. However, the molecular and circuit mechanisms of action by which it does so are unknown. Here we show that parvalbumin-positive cells in the GPe (GPe<sup>PV</sup>) control cocaine reward and sensitization by selectively modulating activity of dopamine (DA) cells projecting to the lateral shell of the nucleus accumbens (NAc). GPe<sup>PV </sup>cells are embedded in a closed-loop circuit controlled by indirect pathway neurons of the dorsomedial striatum (DMS<sup>D2</sup>), which in part receive DAergic innervation from collaterals of the ventral tegmental DA neurons projecting to the nucleus accumbens lateral shell (VTA<sup>DA</sup>®NAcLat). The GPe<sup>PV</sup> cells control these VTA<sup>DA</sup>®NAcLat cells indirectly via GABAergic neurons in the substantia nigra pars reticulata (SNr<sup>GABA</sup>). Cocaine modifies activity in each node in the loop, resulting in long-lasting changes in GPe<sup>PV</sup> and VTA<sup>DA</sup>®NAcLat cell activity, as well as DA levels in the DMS. The principal action of cocaine is likely in the DMS, and this cocaine-induced elevation of DA triggers a depression in the inhibition from DMS<sup>D2</sup> cells onto GPe<sup>PV</sup> neurons, increasing activity of GPe<sup>PV</sup> cells. Interestingly, the levels of spontaneous activity of GPe<sup>PV</sup> cells is more strongly related to the extent of reward and sensitization that animals experience in response to future administration of cocaine than the other cell types in the loop, indicating that the activity in GPe<sup>PV</sup> cells is a key predictor of future cocaine-induced behavioral responses. Single nucleus RNA-sequencing of GPe cells indicated that voltage-gated potassium channels <em>Kcnq3</em> and <em>Kcnq5</em> that control intrinsic excitability are downregulated in GPe<sup>PV</sup> cells following a single cocaine exposure, contributing to the elevation in GPe<sup>PV</sup> cell excitability. Acutely activating the heteromeric KCNQ3/5 channels using the small molecule carnosic acid, a key psychoactive component of rosemary extract, impaired cocaine reward and learning in a volitional cocaine administration task, indicating its potential as a therapeutic to counteract psychostimulant use disorder. Our findings illuminate the molecular and circuit mechanisms by which the GPe orchestrates brain-wide changes in response to cocaine that are required for reward, sensitization, and self-administration behaviors.
DOI: 10.5281/zenodo.8193241
title: Molecular and circuit determinants in the globus pallidus mediating control of cocaine-induced behavioral plasticity

description: The globus pallidus external segment (GPe) acts as a gatekeeper of initial cocaine-induced behavioral plasticity. However, the molecular and circuit mechanisms of action by which it does so are unknown. Here we show that parvalbumin-positive cells in the GPe (GPe<sup>PV</sup>) control cocaine reward and sensitization by selectively modulating activity of dopamine (DA) cells projecting to the lateral shell of the nucleus accumbens (NAc). GPe<sup>PV </sup>cells are embedded in a closed-loop circuit controlled by indirect pathway neurons of the dorsomedial striatum (DMS<sup>D2</sup>), which in part receive DAergic innervation from collaterals of the ventral tegmental DA neurons projecting to the nucleus accumbens lateral shell (VTA<sup>DA</sup>®NAcLat). The GPe<sup>PV</sup> cells control these VTA<sup>DA</sup>®NAcLat cells indirectly via GABAergic neurons in the substantia nigra pars reticulata (SNr<sup>GABA</sup>). Cocaine modifies activity in each node in the loop, resulting in long-lasting changes in GPe<sup>PV</sup> and VTA<sup>DA</sup>®NAcLat cell activity, as well as DA levels in the DMS. The principal action of cocaine is likely in the DMS, and this cocaine-induced elevation of DA triggers a depression in the inhibition from DMS<sup>D2</sup> cells onto GPe<sup>PV</sup> neurons, increasing activity of GPe<sup>PV</sup> cells. Interestingly, the levels of spontaneous activity of GPe<sup>PV</sup> cells is more strongly related to the extent of reward and sensitization that animals experience in response to future administration of cocaine than the other cell types in the loop, indicating that the activity in GPe<sup>PV</sup> cells is a key predictor of future cocaine-induced behavioral responses. Single nucleus RNA-sequencing of GPe cells indicated that voltage-gated potassium channels <em>Kcnq3</em> and <em>Kcnq5</em> that control intrinsic excitability are downregulated in GPe<sup>PV</sup> cells following a single cocaine exposure, contributing to the elevation in GPe<sup>PV</sup> cell excitability. Acutely activating the heteromeric KCNQ3/5 channels using the small molecule carnosic acid, a key psychoactive component of rosemary extract, impaired cocaine reward and learning in a volitional cocaine administration task, indicating its potential as a therapeutic to counteract psychostimulant use disorder. Our findings illuminate the molecular and circuit mechanisms by which the GPe orchestrates brain-wide changes in response to cocaine that are required for reward, sensitization, and self-administration behaviors.
DOI: 10.5281/zenodo.8194041
title: E3SMv2 source codes

description: This archive contains the E3SMv2 source codes for the manuscript submitted to GMD journal.
DOI: 10.5281/zenodo.8194040
title: E3SMv2 source codes

description: This archive contains the E3SMv2 source codes for the manuscript submitted to GMD journal.
DOI: 10.34740/kaggle/dsv/6212391
title: US counties COVID 19 dataset
DOI: 10.57810/lattesdata/2bakqn
title: Banco de Opiniões Políticas dos Brasileiros (1987-2022)

description: O Banco de Opiniões Políticas dos Brasileiros (1987-2022) armazena um grande conjunto de respostas de cidadãos brasileiros a perguntas de pesquisas de opinião realizadas em âmbito nacional entre 1987 e 2022 por diferentes instituições, públicas e privadas, nacionais e internacionais, permitindo conhecer a evolução das opiniões dos brasileiros a respeito de muitos temas políticos ao longo desse período.
DOI: 10.6084/m9.figshare.21668156.v2
title: Abell and Winckler Supplementary Dataset S1

description: Abell and Winckler Supplementary Dataset S1 used in:<br>"Abell and Winckler. (2023). <b>Long-term variability in Pliocene North Pacific Ocean export production and its implications for ocean circulation in a warmer world</b>"<br>submitted to <i>AGU Advances.</i>
DOI: 10.5281/zenodo.8194045
title: Supplementary material/Organic carbon dynamics in clay soils: impact of management practices on microorganism structure and abundance under semi-arid conditions

description: Proper management of soil organic matter in arid and semi-arid regions improves organic carbon storage in the soil, helps in compact soil degradation, and mitigates climate change impacts, and preserves ecosystem functionality and sustainability food security. This study aims to provide a better insight into the biogeochemical processes that drive the organic carbon dynamics of saline clay soil in a semi-arid climate. The study is not intended to be exhaustive but contributes to analyzing the relationship between bacterial microflora, physicochemical properties, and organic carbon dynamics as a function of different soil management modes. The monitoring was carried out on three different plots located at the National Institute of Agronomic Research of Algeria. A physicochemical characterization of the soils was performed. A metagenomic study was also conducted to identify bacterial biodiversity using PCR-amplified DNA sequencing. The study results show that the control plot has the highest average organic carbon stock value at 47 Mg ha<sup>-1</sup>. This was followed by the amended plot and the conventional plot, respectively, with 43 Mg ha<sup>-1</sup> and 38 Mg ha<sup>-1</sup>. In the context of this study, organic carbon dynamics would appear to depend on the interaction of several biotic and abiotic factors. Soil management methods would impact the density and diversity of bacterial microflora. This, in turn, affects the soil's physicochemical properties and, more specifically, organic carbon dynamics and storage.