cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.27sk4
title: Data from: Patients’ subjective assessment of the duration of cataract surgery: a case series

description: Objectives: Surgery duration is a source of preoperative anxiety for
 patients undergoing cataract surgery. To better inform patients, we
 evaluated the agreement between objective and patient-perceived surgery
 durations. Design: Case series. Setting: Public teaching university
 hospital (Paris, France). Participants: During the study period, 368
 cataract surgery cases performed on 285 patients were included, 85 cases
 were excluded from the final analysis. All patients who had uneventful
 phacoemulsification were included. Cases with any significant
 intraoperative adverse event or cases requiring additional anaesthesia
 other than topical were excluded. Resident performed cases were also
 excluded. Primary and secondary outcomes: Procedures were timed (objective
 duration) and patients were asked, immediately afterwards, to assess the
 duration of their surgery (patient-assessed duration). The agreement
 between objective and patient-assessed durations as well as influencing
 factors was studied. Results: Mean objective duration (13.9±5 min) and
 patient-assessed duration (15.3±6.9 min) were significantly correlated
 (Spearman's r=0.452, p&lt;0.0001). Furthermore, Bland-Altman
 analysis and the intraclass correlation coefficient (0.341, 95% CI 0.23 to
 0.44) were quite in agreement. On univariate analysis, senior-performed
 procedures were significantly shorter than those performed by juniors
 (13.4 vs 17.8 min, p=0.0001). Pain was recorded as ‘no sensation’ (31.5%
 of the cases), ‘mild sensation’ (41%), ‘moderate pain’ (23.3%), ‘intense
 pain’ (3.5%) and ‘unbearable pain’ (0.7%). Groups with high pain score had
 significantly longer procedures (p&lt;0.001). Multivariate analysis
 revealed that the only independent factors associated with both the
 objective and patient-assessed durations of surgery were surgeon's
 experience and pain-score. Conclusions: In our study, patients’ estimated
 and real duration of the surgery showed moderate agreement, suggesting
 that emotions associated with eye surgery under topical anaesthesia did
 not dramatically hinder the patients’ perception of time. However, the
 benefit of preoperative counselling regarding the duration of surgery will
 need further evaluation.
description: Database Patients’
 subjective assessment of the duration of cataract
 surgery
DOI: 10.5281/zenodo.18384294
title: Voces de la Migración (2)

description: Este catálogo acompaña a la segunda estación de la exposición itinerante Voces de la Migración, un proyecto que se desplaza de territorio en territorio recogiendo relatos sensibles, imágenes encarnadas y memorias en tránsito. La Entrega nº 2 se presenta en España, en la Fundación Díaz-Caneja, espacio donde paisaje, identidad y memoria dialogan desde hace décadas con una mirada profundamente arraigada en lo humano y lo rural.

Cada edición de Voces de la Migración no es una repetición, sino una sedimentación: una capa más en la construcción de un archivo vivo de la experiencia migrante. Esta nueva parada amplía el mosaico iniciado en otras geografías, incorporando nuevas voces, acentos y corporalidades que habitan el desplazamiento como una forma de estar en el mundo.

El proyecto, alineado con los Objetivos de Desarrollo Sostenible de la Agenda 2030, se articula desde una metodología A/r/tográfica que entrelaza arte, investigación y acción educativa para indagar en el impacto emocional de la migración. No se trata de cuantificar trayectos ni de ilustrar grandes relatos heroicos, sino de atender a los gestos mínimos del desarraigo: aquello que se pierde, lo que se transforma y lo que, a pesar de todo, permanece.

Nacer y morir son verbos que se conjugan en tierra. El ser humano se origina en un cuerpo-territorio y en un tiempo preciso; aprende un paisaje, una lengua, una cadencia afectiva que lo habita desde dentro. Cuando ese lugar es hospitalario, la vida se repliega en él hasta el final. Pero cuando deja de serlo, el sujeto migrante se ve obligado a desprenderse de su suelo, de su voz y de los pájaros que organizaban su pensamiento, para injertarse en otra geografía, en otros sonidos, en cantos nuevos que acompañarán su existencia.

En este tránsito, la migración se convierte en un umbral: un espacio intermedio, sin nombre previo, que necesita ser narrado para poder ser habitado. Para cartografiarlo, las personas participantes han trabajado a partir de la metáfora de la piedra que desciende, erosionada por el agua, hasta encontrar reposo lejos del lugar donde nació. Una piedra que no cae, sino que se desplaza, se transforma y aprende otra forma de permanecer.

Esta imagen permite trazar un mapa de microrrelatos migratorios que se alejan de la épica para situarse en el aprendizaje íntimo del destierro. La metáfora dialoga con las acciones performativas de Esther Ferrer —Les voy a contar mi vida y Se hace camino al andar—, con el caminar como práctica estética del land art de Richard Long y con la obra pictórica de Juan Manuel Díaz-Caneja, cuya mirada supo captar como pocas el pulso emocional del paisaje castellano.

Desde este cruce de referencias, Voces de la Migración (2) propone un espacio de escucha, donde cada piedra, cada imagen y cada palabra sostienen una pregunta común: ¿cómo se nombra un lugar cuando ya no es el de origen y todavía no es del todo propio?

 

Los autores
DOI: 10.5281/zenodo.18384295
title: Voces de la Migración (2)

description: Este catálogo acompaña a la segunda estación de la exposición itinerante Voces de la Migración, un proyecto que se desplaza de territorio en territorio recogiendo relatos sensibles, imágenes encarnadas y memorias en tránsito. La Entrega nº 2 se presenta en España, en la Fundación Díaz-Caneja, espacio donde paisaje, identidad y memoria dialogan desde hace décadas con una mirada profundamente arraigada en lo humano y lo rural.

Cada edición de Voces de la Migración no es una repetición, sino una sedimentación: una capa más en la construcción de un archivo vivo de la experiencia migrante. Esta nueva parada amplía el mosaico iniciado en otras geografías, incorporando nuevas voces, acentos y corporalidades que habitan el desplazamiento como una forma de estar en el mundo.

El proyecto, alineado con los Objetivos de Desarrollo Sostenible de la Agenda 2030, se articula desde una metodología A/r/tográfica que entrelaza arte, investigación y acción educativa para indagar en el impacto emocional de la migración. No se trata de cuantificar trayectos ni de ilustrar grandes relatos heroicos, sino de atender a los gestos mínimos del desarraigo: aquello que se pierde, lo que se transforma y lo que, a pesar de todo, permanece.

Nacer y morir son verbos que se conjugan en tierra. El ser humano se origina en un cuerpo-territorio y en un tiempo preciso; aprende un paisaje, una lengua, una cadencia afectiva que lo habita desde dentro. Cuando ese lugar es hospitalario, la vida se repliega en él hasta el final. Pero cuando deja de serlo, el sujeto migrante se ve obligado a desprenderse de su suelo, de su voz y de los pájaros que organizaban su pensamiento, para injertarse en otra geografía, en otros sonidos, en cantos nuevos que acompañarán su existencia.

En este tránsito, la migración se convierte en un umbral: un espacio intermedio, sin nombre previo, que necesita ser narrado para poder ser habitado. Para cartografiarlo, las personas participantes han trabajado a partir de la metáfora de la piedra que desciende, erosionada por el agua, hasta encontrar reposo lejos del lugar donde nació. Una piedra que no cae, sino que se desplaza, se transforma y aprende otra forma de permanecer.

Esta imagen permite trazar un mapa de microrrelatos migratorios que se alejan de la épica para situarse en el aprendizaje íntimo del destierro. La metáfora dialoga con las acciones performativas de Esther Ferrer —Les voy a contar mi vida y Se hace camino al andar—, con el caminar como práctica estética del land art de Richard Long y con la obra pictórica de Juan Manuel Díaz-Caneja, cuya mirada supo captar como pocas el pulso emocional del paisaje castellano.

Desde este cruce de referencias, Voces de la Migración (2) propone un espacio de escucha, donde cada piedra, cada imagen y cada palabra sostienen una pregunta común: ¿cómo se nombra un lugar cuando ya no es el de origen y todavía no es del todo propio?

 

Los autores
DOI: 10.5061/dryad.pc1q925
title: Data from: Phenotypic responses to microbial volatiles render a mold fungus more susceptible to insect damage

description: In decomposer systems, fungi show diverse phenotypic responses to volatile
 organic compounds of microbial origin (volatiles). The mechanisms
 underlying such responses and their consequences for the performance and
 ecological success of fungi in a multitrophic community context have
 rarely been tested explicitly. We used a laboratory‐based approach in
 which we investigated a tripartite yeast–mold–insect model decomposer
 system to understand the possible influence of yeast‐borne volatiles on
 the ability of a chemically defended mold fungus to resist insect damage.
 The volatile‐exposed mold phenotype (1) did not exhibit protein kinase
 A‐dependent morphological differentiation, (2) was more susceptible to
 insect foraging activity, and (3) had reduced insecticidal properties.
 Additionally, the volatile‐exposed phenotype was strongly impaired in
 secondary metabolite formation and unable to activate “chemical defense”
 genes upon insect damage. These results suggest that volatiles can be
 ecologically important factors that affect the chemical‐based combative
 abilities of fungi against insect antagonists and, consequently, the
 structure and dynamics of decomposer communities.
description: Aspergillus gene
 expression and growth, insect development,
 emericellamidesThis file containes data
 on Aspergillus gene expression and colony growth, fly development, and
 emericellamides for Caballero Ortiz et al., Phenotypic responses to
 microbial volatiles render a mould fungus more susceptible to insect
 damage_Caballero Ortiz et
 al_data.xlsx
DOI: 10.5061/dryad.r47q769s
title: Data from: Neofunctionalization within the Omp85 protein superfamily during chloroplast evolution

description: The Toc75 and OEP80 proteins reside in the chloroplast outer envelope
 membrane. Both are members of the Omp85 superfamily of β-barrel proteins,
 and both are essential in Arabidopsis plants with important roles
 throughout development. Toc75 forms the translocation channel of the TOC
 complex, which is responsible for importing nucleus-encoded proteins into
 chloroplasts, while the function of OEP80 remains uncertain. Deficiency of
 Toc75 in plants that have artificially reduced OEP80 levels suggests that
 the latter may be involved in the biogenesis of β-barrel proteins, in
 similar fashion to Omp85-related proteins in other systems. To elucidate
 the evolutionary relationship between the two proteins, we conducted a
 phylogenetic analysis using 48 sequences from diverse species. This
 indicated that Toc75 and OEP80 belong to sister groups in the Omp85
 superfamily, and originate from a gene duplication in an ancient
 eukaryotic organism &gt; 1.2 billion years ago. Our analysis also
 supports the notion that the Toc75 family has undergone a phase of
 neofunctionalization to accommodate the organelle’s newly acquired need to
 import proteins.
description: Toc75_allignment_Topel_PSB_2011Alignment of the C-terminal end of 48 Toc75 amino acid sequences. The alignemnt has been truncated so that only the part corresponding to residues 651-818 of atToc75-III remains and was used for the phylogenetic analysis. Also included in the file are the instructions to MrBayes, that was used to analyze the data.Toc75_trees_Topel_PSB_2011The resulting 50% majority rule consensus trees (with and without branch length data) from the analysis of the data in "Toc75_allignment_Topel_PSB_2011.nex". The tree with branch lengths was used for figure 1 in the paper.
DOI: 10.5061/dryad.t1f10sr
title: Data from: Nematode community responses to range-expanding and native plant communities in original and new range soils

description: Many plant species expand their range to higher latitudes in response to
 climate change. However, it is poorly understood how biotic interactions
 in the new range differ from interactions in the original range. Here, in
 a mesocosm experiment, we analyze nematode community responses in original
 and new range soils to plant communities with either 1) species native in
 both the original and new range, 2) range-expanding species related to
 these natives (related range-expanders), or 3) range-expanders without
 native congeneric species in the new range (unrelated range-expanders). We
 hypothesized that nematode community shifts between ranges are strongest
 for unrelated range-expanders and minimal for plant species that are
 native in both ranges. As a part of these community shifts, we
 hypothesized that range-expanders, but not natives, would accumulate fewer
 root-feeding nematodes in their new range compared to their original
 range. Analyses of responses of nematodes from both original and new
 ranges and comparison between range-expanders with and without close
 relatives have not been made before. Our study reveals that none of the
 plant communities experienced evident nematode community shifts between
 the original and new range. However, in soils from the new range,
 root-feeding nematode communities of natives and related range-expanders
 were more similar than in soils from the original range, whereas the
 nematode community of unrelated range-expanders was distinct from the
 communities of natives and related range-expanders in soils from both
 ranges. The abundances of root-feeding nematodes were comparable between
 the original and new range for all plant communities. Unexpectedly,
 unrelated range-expanders overall accumulated most root-feeding nematodes,
 whereas related range-expanders accumulated fewest. We conclude that
 nematode communities associated to native and range-expanding plant
 species differ between the original and the new range, but that
 range-expanding plant species do not accumulate fewer root-feeding
 nematodes in their new than in their original range.
description: Nematode_data_wilschutetalFile contains nematode counts (per 100 g dry weight soil) of the major nematode feeding types and several root-feeding nematode families and genera, and relative counts of root-feeding nematode groups (per gram of root).wilschutetal_data.xlsx
DOI: 10.5061/dryad.rv6088k
title: Data from: Decreased total iron binding capacity upon intensive care unit admission predicts red blood cell transfusion in critically ill patients

description: Introduction: Red blood cell (RBC) transfusion is associated with poor
 clinical outcome in critically ill patients. We investigated the
 predictive value of biomarkers on intensive care units (ICU) admission for
 RBC transfusion within 28 days. Methods: Critically ill patients (n = 175)
 who admitted to our ICU with organ dysfunction and an expected stay of ≥
 48 hours, without hemorrhage, were prospectively studied (derivation
 cohort, n = 121; validation cohort, n = 54). Serum levels of 12 biomarkers
 (hemoglobin, creatinine, albumin, interleukin-6 [IL-6], erythropoietin,
 Fe, total iron binding capacity [TIBC], transferrin, ferritin, transferrin
 saturation, folate, and vitamin B12) were measured upon ICU admission,
 days 7, 14, 21 and 28. Results: Among the 12 biomarkers measured upon ICU
 admission, levels of hemoglobin, albumin, IL-6, TIBC, transferrin and
 ferritin were statistically different between transfusion and
 non-transfusion group. Of 6 biomarkers, TIBC upon ICU admission had the
 highest area under the curve value (0.835 [95% confidence interval] =
 0.765–0.906) for predicting RBC transfusion (cut-off value = 234.5 µg/dL;
 sensitivity = 0.906, specificity = 0.632). This result was confirmed in
 validation cohort, whose sensitivity and specificity were 0.888 and 0.694,
 respectively. Measurement of these biomarkers every seven days revealed
 that albumin, TIBC and transferrin were statistically different between
 groups throughout hospitalization until 28 days. In validation cohort,
 patients in the transfusion group had significantly higher serum hepcidin
 levels than those in the non-transfusion group (P = 0.004). In addition,
 joint analysis across derivation and validation cohorts revealed that the
 serum IL-6 levels were higher in the transfusion group (P = 0.0014).
 Conclusion: Decreased TIBC upon ICU admission has high predictive value
 for RBC transfusion unrelated to hemorrhage within 28 days.
description: Plos one
 data
DOI: 10.5061/dryad.5tj50
title: Data from: A multivariate test of disease risk reveals conditions leading to disease amplification

description: Theory predicts that increasing biodiversity will dilute the risk of
 infectious diseases under certain conditions and will amplify disease risk
 under others. Yet, few empirical studies demonstrate amplification. This
 contrast may occur because few studies have considered the multivariate
 nature of disease risk, which includes richness and abundance of parasites
 with different transmission modes. By combining a multivariate statistical
 model developed for biodiversity–ecosystem–multifunctionality with an
 extensive field manipulation of host (plant) richness, composition and
 resource supply to hosts, we reveal that (i) host richness alone could not
 explain most changes in disease risk, and (ii) shifting host composition
 allowed disease amplification, depending on parasite transmission mode.
 Specifically, as predicted from theory, the effect of host diversity on
 parasite abundance differed for microbes (more density-dependent
 transmission) and insects (more frequency-dependent transmission). Host
 diversity did not influence microbial parasite abundance, but nearly
 doubled insect parasite abundance, and this amplification effect was
 attributable to variation in host composition. Parasite richness was
 reduced by resource addition, but only in species-rich host communities.
 Overall, this study demonstrates that multiple drivers, related to both
 host community and parasite characteristics, can influence disease risk.
 Furthermore, it provides a framework for evaluating multivariate disease
 risk in other systems.
description: DRE Disease
 DataThis file includes data
 used to asses parasite richness and abundance responses to experimental
 host resource supply and host diversity treatments. The columns from left
 to right are: the unique plot ID, the experimental block, the plot
 planting treatment, the host diversity treatment, the resource supply
 treatment, community load for all parasites, rarefied parasite richness,
 microbial parasite load, insect parasite load, microbial rarefied
 richness, and insect rarefied richness.DRE_Disease_DF.csvDRE Disease AnalysisThis file contains the r code used to assess the impacts of experimental host diversity and resource supply to hosts on parasite abundance and parasite richness.DRE_Disease_Analysis.R
DOI: 10.5061/dryad.6ts50
title: Data from: Guppies occupy consistent positions in social networks: mechanisms and consequences

description: The social network approach has focused increasing attention on the
 complex web of relationships found in animal groups and populations. As
 such, network analysis has been used frequently to identify the role that
 particular individuals play in their social interactions and this approach
 has led to the question of whether, and in what context, individuals
 consistently occupy certain positions within their network. Here we
 investigated the social networks of guppies, Poecilia reticulata, in the
 wild and tested whether 1) individual fish occupy consistent positions in
 their network and 2) whether these positions are robust to experimental
 manipulations to their habitat. Our habitat manipulations involved
 increasing and decreasing the surface area of their pools as well as
 translocating an entire pool population between different pools in situ.
 We found that guppies did indeed consistently occupy positions within
 their social networks, irrespective of the type of manipulation and that
 individual network positions vary between individuals. Our results suggest
 that at least 2 factors contribute to the observed individual variation in
 network position including 1) the tendency to be social and 2)
 sex-specific social preferences. Finally, we used a simulation to explore
 the implications of individuals consistently occupying different network
 positions regarding the exposure of fish to parasites and predators. The
 time until infection decreased with increasing rank of individual
 betweenness and the predation risk increased with decreasing rank of the
 individual node strength thus illustrating the potential ecological and
 evolutionary consequences of consistent network positions.
description: Guppy_network_data_Krause_et_al_2016The file contains network data collected in the field (Trinidad, March-April 2013 and 2015) and a short description of the data format.
DOI: 10.5061/dryad.97kg689
title: Data from: From groups to communities in western lowland gorillas

description: Social networks are the result of interactions between individuals at
 different temporal scales. Thus, sporadic intergroup encounters and
 individual forays play a central role in defining the dynamics of
 populations in social species. We assessed the rate of intergroup
 encounters for three western lowland gorilla (Gorilla gorilla gorilla)
 groups with daily observations over five years, and noninvasively
 genotyped a larger population over four months. Both approaches revealed a
 social system much more dynamic than anticipated, with non-aggressive
 intergroup encounters that involved social play by immature individuals,
 exchanges of members between groups likely modulated by kinship, and
 absence of infanticide evidenced by infants non fathered by the silverback
 of the group where they were found. This resulted in a community composed
 of groups that interacted frequently and non-aggressively, contrasting
 with the more fragmented and aggressive mountain gorilla (G. beringei
 beringei) societies. Such extended sociality can promote the sharing of
 behavioural and cultural traits, but might also increase the
 susceptibility of western lowland gorillas to infectious diseases that
 have decimated their populations in recent times.
description: GenotypesGenotypic profiles of the 125 identified individuals in this study at 17 microsatellite loci. Missing alleles are indicated by a three-hyphen string. Hemizygotes were obtained by scoring at least twice an allele in two independent PCRs. ID: identifier; S: sex.Dataset S2.csvGeographic coordinatesGeographic coordinates, collection date and corresponding genotype of the 279 faecal gorilla samples analysed in this study. ID: identifier.Dataset S1.csv