cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14237325.v1
title: <i>Peronospora kuewa</i>, sp. nov., a new downy mildew species infecting the endangered Hawaiian plant <i>Plantago princeps</i> var. <i>princeps</i>

description: <i>Plantago princeps</i> var. <i>princeps</i> is an endangered native Hawaiian plant, and part of the recovery plan includes repopulation using plants grown in a nursery. However, disease pressure from downy mildew is hindering repopulation efforts. The organism associated with the downy mildew was determined to be a <i>Peronospora</i> species with brown, ellipsoid conidia measuring 21 by 16 µm on average, which was morphologically different from validly described species of <i>Peronospora</i> that infect <i>Plantago</i> species, but it was morphologically similar to the invalidly published species <i>Peronospora lanceolatae</i> (Art. 40.1). Comparison of mitochondrial cytochrome oxidase subunit I (<i>cox</i>1), mitochondrial cytochrome oxidase subunit II (<i>cox</i>2), nuclear internal transcribed spacer (ITS), and nuclear 28S rRNA D1–D2 (28S) loci revealed the unknown <i>Peronospora</i> to be molecularly divergent from <i>Peronospora alta</i> and <i>Peronsopora plantaginis</i>, but very similar to <i>Peronospora</i> from <i>Plantago lanceolata</i>, the type host of <i>P. lanceolatae</i>. Phylogenetic trees inferred with maximum likelihood and Bayesian inference from a concatenated alignmaent and individual gene trees confirmed the divergence of the unknown <i>Peronospora</i> from <i>P. alta</i> and <i>P. plantaginis</i> and its similarity to <i>P. lanceolatae</i>. However, attempts to inoculate <i>Plantago lanceolata</i> with the strain from <i>Plantago princeps</i> var. <i>princeps</i> were unsuccessful, which, in conjunction with divergence in ITS, suggests that the unknown <i>Peronospora</i> is specific to <i>Plantago princeps</i> var. <i>princeps</i>. Herein, the <i>Peronospora</i> strain on <i>Plantago princeps</i> var. <i>princeps</i> is described as the new species <i>Peronospora kuewa</i> based on morphology, molecular phylogenetics, and host specificity. In addition, <i>Peronospora gaponenkoae</i> is described here to honor Nina Ivanova Gaponenko on the basis of her description of <i>P. lanceolatae</i>.
DOI: 10.6084/m9.figshare.14237325
title: <i>Peronospora kuewa</i>, sp. nov., a new downy mildew species infecting the endangered Hawaiian plant <i>Plantago princeps</i> var. <i>princeps</i>

description: <i>Plantago princeps</i> var. <i>princeps</i> is an endangered native Hawaiian plant, and part of the recovery plan includes repopulation using plants grown in a nursery. However, disease pressure from downy mildew is hindering repopulation efforts. The organism associated with the downy mildew was determined to be a <i>Peronospora</i> species with brown, ellipsoid conidia measuring 21 by 16 µm on average, which was morphologically different from validly described species of <i>Peronospora</i> that infect <i>Plantago</i> species, but it was morphologically similar to the invalidly published species <i>Peronospora lanceolatae</i> (Art. 40.1). Comparison of mitochondrial cytochrome oxidase subunit I (<i>cox</i>1), mitochondrial cytochrome oxidase subunit II (<i>cox</i>2), nuclear internal transcribed spacer (ITS), and nuclear 28S rRNA D1–D2 (28S) loci revealed the unknown <i>Peronospora</i> to be molecularly divergent from <i>Peronospora alta</i> and <i>Peronsopora plantaginis</i>, but very similar to <i>Peronospora</i> from <i>Plantago lanceolata</i>, the type host of <i>P. lanceolatae</i>. Phylogenetic trees inferred with maximum likelihood and Bayesian inference from a concatenated alignmaent and individual gene trees confirmed the divergence of the unknown <i>Peronospora</i> from <i>P. alta</i> and <i>P. plantaginis</i> and its similarity to <i>P. lanceolatae</i>. However, attempts to inoculate <i>Plantago lanceolata</i> with the strain from <i>Plantago princeps</i> var. <i>princeps</i> were unsuccessful, which, in conjunction with divergence in ITS, suggests that the unknown <i>Peronospora</i> is specific to <i>Plantago princeps</i> var. <i>princeps</i>. Herein, the <i>Peronospora</i> strain on <i>Plantago princeps</i> var. <i>princeps</i> is described as the new species <i>Peronospora kuewa</i> based on morphology, molecular phylogenetics, and host specificity. In addition, <i>Peronospora gaponenkoae</i> is described here to honor Nina Ivanova Gaponenko on the basis of her description of <i>P. lanceolatae</i>.
DOI: 10.6084/m9.figshare.14237323.v1
title: Extended phylogeography of the ancestral <i>Morchella anatolica</i> supports preglacial presence in Europe and Mediterranean origin of morels

description: Over 80 species are recognized in the commercially important genus <i>Morchella</i>, many of them endemic to specific regions or continents. Among them, <i>M. anatolica</i> and <i>M. rufobrunnea</i> are the earliest diverging lineages and are key in decoding the evolutionary history, global biogeography, and ecological trends within this iconic genus. Early ancestral area reconstruction (AAR) tests postulated a western North American origin of morels but had not included in the analyses <i>M. anatolica</i>, whose phylogenetic identity remained at the time unresolved. Following new collections of <i>M. anatolica</i> and <i>M. rufobrunnea</i> from the Mediterranean islands of Cyprus, Kefalonia, Lesvos, Malta, and Zakynthos, we performed revised AAR tests to update the historical biogeography of the genus. Our results, inferred from multilocus analysis of an expanded data set of 79 phylospecies, challenge previous reconstructions and designate the Mediterranean basin as the most likely place of origin for morels. Detailed morphoanatomical analyses demonstrate that ascocarp rufescence, the nondarkening apothecial ridges, the absence of a sinus, and the stipe pruinescence are all stable synapomorphic features of sect. <i>Rufobrunnea</i>, which could be interpreted as ancestral for the genus. The saprotrophic mode of nutrition, suggested by the prolific in vitro growth of <i>M. anatolica</i>, might also be an ancestral trait. Emended descriptions, including extensive imagery and scanning electron microscopy, are provided, and a new evolutionary hypothesis of the genus is proposed.
DOI: 10.6084/m9.figshare.14394892
title: Novel <i>Fusarium</i> mutualists of two <i>Euwallacea</i> species infesting <i>Acacia crassicarpa</i> in Indonesia

description: Several species in the <i>Euwallacea fornicatus</i> complex have emerged as important pests of woody plants globally, particularly in habitats where they are invasive aliens. These beetles live in obligate symbioses with fungi in the genus <i>Fusarium</i>. In this study, we identified <i>Euwallacea</i> spp. and their fungal mutualists that have emerged as pests of planted <i>Acacia crassicarpa</i> in Riau, Indonesia. Morphological identification and phylogenetic analyses of the mitochondrial cytochrome oxidase <i>c</i> subunit I (<i>COI</i>) gene confirmed that <i>E. similis</i> and <i>E. perbrevis</i> are the most abundant beetles infesting these trees. Multilocus phylogenetic analyses of their fungal mutualists revealed their nonspecific association with six <i>Fusarium</i> species. These included <i>F. rekanum</i> and five novel <i>Fusarium</i> mutualists within the <i>Fusarium solani</i> species complex (FSSC), four of which reside in the Ambrosia <i>Fusarium</i> Clade (AFC). These new species are described here as <i>F. akasia, F. awan, F. mekan, F. variasi</i>, and <i>F. warna</i>.
DOI: 10.6084/m9.figshare.14394892.v1
title: Novel <i>Fusarium</i> mutualists of two <i>Euwallacea</i> species infesting <i>Acacia crassicarpa</i> in Indonesia

description: Several species in the <i>Euwallacea fornicatus</i> complex have emerged as important pests of woody plants globally, particularly in habitats where they are invasive aliens. These beetles live in obligate symbioses with fungi in the genus <i>Fusarium</i>. In this study, we identified <i>Euwallacea</i> spp. and their fungal mutualists that have emerged as pests of planted <i>Acacia crassicarpa</i> in Riau, Indonesia. Morphological identification and phylogenetic analyses of the mitochondrial cytochrome oxidase <i>c</i> subunit I (<i>COI</i>) gene confirmed that <i>E. similis</i> and <i>E. perbrevis</i> are the most abundant beetles infesting these trees. Multilocus phylogenetic analyses of their fungal mutualists revealed their nonspecific association with six <i>Fusarium</i> species. These included <i>F. rekanum</i> and five novel <i>Fusarium</i> mutualists within the <i>Fusarium solani</i> species complex (FSSC), four of which reside in the Ambrosia <i>Fusarium</i> Clade (AFC). These new species are described here as <i>F. akasia, F. awan, F. mekan, F. variasi</i>, and <i>F. warna</i>.
DOI: 10.6084/m9.figshare.14237323
title: Extended phylogeography of the ancestral <i>Morchella anatolica</i> supports preglacial presence in Europe and Mediterranean origin of morels

description: Over 80 species are recognized in the commercially important genus <i>Morchella</i>, many of them endemic to specific regions or continents. Among them, <i>M. anatolica</i> and <i>M. rufobrunnea</i> are the earliest diverging lineages and are key in decoding the evolutionary history, global biogeography, and ecological trends within this iconic genus. Early ancestral area reconstruction (AAR) tests postulated a western North American origin of morels but had not included in the analyses <i>M. anatolica</i>, whose phylogenetic identity remained at the time unresolved. Following new collections of <i>M. anatolica</i> and <i>M. rufobrunnea</i> from the Mediterranean islands of Cyprus, Kefalonia, Lesvos, Malta, and Zakynthos, we performed revised AAR tests to update the historical biogeography of the genus. Our results, inferred from multilocus analysis of an expanded data set of 79 phylospecies, challenge previous reconstructions and designate the Mediterranean basin as the most likely place of origin for morels. Detailed morphoanatomical analyses demonstrate that ascocarp rufescence, the nondarkening apothecial ridges, the absence of a sinus, and the stipe pruinescence are all stable synapomorphic features of sect. <i>Rufobrunnea</i>, which could be interpreted as ancestral for the genus. The saprotrophic mode of nutrition, suggested by the prolific in vitro growth of <i>M. anatolica</i>, might also be an ancestral trait. Emended descriptions, including extensive imagery and scanning electron microscopy, are provided, and a new evolutionary hypothesis of the genus is proposed.
DOI: 10.6084/m9.figshare.14569107
title: USER_RLMS-HSE_IND_2010_2019_v2_rus.rar

description: Return on overweight in the Russian labor marketData: RLMSperiod: 2010-2019
DOI: 10.6084/m9.figshare.14569107.v1
title: USER_RLMS-HSE_IND_2010_2019_v2_rus.rar

description: Return on overweight in the Russian labor marketData: RLMSperiod: 2010-2019
DOI: 10.5066/p9zino2p
title: Data from pathology of Lagovirus europaeus GI.2/RHDV2/b (rabbit hemorrhagic disease virus 2) in native North American lagomorphs

description: Rabbit hemorrhagic disease, a notifiable foreign animal disease in the USA, was reported for the first time in wild native North American rabbits and hares in April 2020 in the southwestern USA. Affected species included the Desert Cottontail (Sylvilagus audubonii), Mountain Cottontail (S. nutallii), Black-tailed Jackrabbit (Lepus californicus), and Antelope Jackrabbit (L. alleni). Desert Cottontails (n=7) and Black-tailed Jackrabbits (n=7) collected in April and May 2020 were necropsied at the U.S. Geological Survey National Wildlife Health Center (NWHC) and tested positive for Lagovirus europaeus GI.2, also known as rabbit hemorrhagic disease virus 2 (GI.2/RHDV2/b), by real-time PCR at the U.S. Department of Agriculture?s Foreign Animal Disease Diagnostic Laboratory. Gross and microscopic lesions were similar to those reported in European rabbits (Oryctolagus cuniculus) and other hare (Lepus) species with GI.2/RHDV2/b infection and included epistaxis (12/13; 92%), massive hepatocellular dissociation (14/14; 100%) and necrosis/apoptosis (11/11; 100%), pulmonary congestion (12/12; 100%), edema (12/13; 92%), and hemorrhage (11/12; 92%), and acute renal tubular injury (3/8; 38%). As in previous reports and when compared to historical cases in the NWHC diagnostic database, massive hepatocellular dissociation and necrosis/apoptosis was the most diagnostically distinct finding in GI.2/RHDV2/b-positive rabbits and hares. Based on the apparent susceptibility of North American Sylvilagus and Lepus species to fatal GI.2/RHDV2/b infection, additional work is needed to understand the host range, pathogenicity, and potential population impacts of GI.2/RHDV2/b in North America.
DOI: 10.6084/m9.figshare.14569137
title: Antibiotic resistance among major pathogens compared to hospital treatment guidelines and antibiotic use in Nordic hospitals 2010–2018

description: The Nordic countries have comparable nationwide antibiotic resistance surveillance systems and individual antibiotic stewardship programmes. The aim of this study was to assess antibiotic resistance among major pathogens in relation to practice guidelines for hospital antibiotic treatment and antibiotic use in Nordic countries 2010–2018. Antibiotic resistance among invasive isolates from 2010–2018 and aggregated antibiotic use were obtained from the European Centre for Disease Prevention and Control. Hospital practice guidelines were obtained from national or regional guidelines. Antibiotic resistance levels among <i>Escherichia coli</i> and <i>Klebsiella pneumoniae</i> were similar in all Nordic countries in 2018 and low compared to the European mean. Guidelines for acute pyelonephritis varied; 2nd generation cephalosporin (Finland), 3rd generation cephalosporins (Sweden, Norway), ampicillin with an aminoglycoside or aminoglycoside monotherapy (Denmark, Iceland and Norway). Corresponding guidelines for sepsis of unknown origin were 2nd (Finland) or 3rd (Sweden, Norway, Iceland) generation cephalosporins, carbapenems, (Sweden) combinations of penicillin with an aminoglycoside (Norway, Denmark), or piperacillin-tazobactam (all Nordic countries). Methicillin-resistant <i>Staphylococcus aureus</i> rates were 0–2% and empirical treatment with anti-MRSA antibiotics was not recommended in any country. Rates of penicillin non-susceptibility among <i>Streptococcus pneumoniae</i> were low (&lt;10%) except in Finland and Iceland (&lt;15%), but benzylpenicillin was recommended for community-acquired pneumonia in all countries. Despite similar resistance rates among Enterobacteriaceae there were differences in practice guidelines for pyelonephritis and sepsis. National surveillance of antibiotic resistance can be used for comparison and optimization of guidelines and stewardship interventions to preserve the low levels of antibiotic resistance in Nordic countries.
DOI: 10.6084/m9.figshare.14569137.v1
title: Antibiotic resistance among major pathogens compared to hospital treatment guidelines and antibiotic use in Nordic hospitals 2010–2018

description: The Nordic countries have comparable nationwide antibiotic resistance surveillance systems and individual antibiotic stewardship programmes. The aim of this study was to assess antibiotic resistance among major pathogens in relation to practice guidelines for hospital antibiotic treatment and antibiotic use in Nordic countries 2010–2018. Antibiotic resistance among invasive isolates from 2010–2018 and aggregated antibiotic use were obtained from the European Centre for Disease Prevention and Control. Hospital practice guidelines were obtained from national or regional guidelines. Antibiotic resistance levels among <i>Escherichia coli</i> and <i>Klebsiella pneumoniae</i> were similar in all Nordic countries in 2018 and low compared to the European mean. Guidelines for acute pyelonephritis varied; 2nd generation cephalosporin (Finland), 3rd generation cephalosporins (Sweden, Norway), ampicillin with an aminoglycoside or aminoglycoside monotherapy (Denmark, Iceland and Norway). Corresponding guidelines for sepsis of unknown origin were 2nd (Finland) or 3rd (Sweden, Norway, Iceland) generation cephalosporins, carbapenems, (Sweden) combinations of penicillin with an aminoglycoside (Norway, Denmark), or piperacillin-tazobactam (all Nordic countries). Methicillin-resistant <i>Staphylococcus aureus</i> rates were 0–2% and empirical treatment with anti-MRSA antibiotics was not recommended in any country. Rates of penicillin non-susceptibility among <i>Streptococcus pneumoniae</i> were low (&lt;10%) except in Finland and Iceland (&lt;15%), but benzylpenicillin was recommended for community-acquired pneumonia in all countries. Despite similar resistance rates among Enterobacteriaceae there were differences in practice guidelines for pyelonephritis and sepsis. National surveillance of antibiotic resistance can be used for comparison and optimization of guidelines and stewardship interventions to preserve the low levels of antibiotic resistance in Nordic countries.
DOI: 10.5281/zenodo.4661437
title: Karonga historical flood occurrences and impacts dataset (2000-2018)

description: Secondary data on historical flood events, their location, date and recorded impacts in Karonga district of Northern Malawi. As Karonga district is mainly affected by flash flooding, the dataset is specifically driven toward flash flood type risk analysis. The entries were extracted manually from five different sources of information: Disaster reports from Humanitarian Actors (IFRC GO, UNICEF Malawi), existing global disaster (EM-DAT; Munich RE), government data (Malawi Department of Disaster Management Affair - DODMA), online news-briefs (FloodList; ReliefWeb) and national online media (Nyasa Times; The Nation). The resulting consolidated event database has a three levels of spatial granularity: Karonga District, Traditional Authority (TA) and community levels (GVH). A total of 142 records of flash flood events affecting the district from 2000 to 2018 are gathered. This included 48 events reported at district level, and 38 events at TA level.
DOI: 10.6084/m9.figshare.14560593
title: Block Design Measurements Review Table

description: Literature review of block design task studies
DOI: 10.5519/qd.bars6dl8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (133 records)
DOI: 10.5281/zenodo.4747452
title: Corpus of Parliamentary Questions in the Hellenic Parliament

description: This is the first published Corpus of Parliamentary Questions in the Hellenic Parliament. It contains 2,000 written questions from all Greek political parties, submitted during the period 2010 - 2019.
DOI: 10.21227/azr4-eq96
title: Improved DC-link Current for Parallel Three-Phase VSCs with 2DoF Interleaving PWM

description: Interleaving three-phase voltage source converters (VSCs) is a popular solution for medium- and high-power applications. In addition to the circulating current, the impact of PWM strategies on the DC-link current ripple is an important issue for practical DC-link capacitor designs, which could affect system reliability and lifetime. Existing studies have been reported to evaluate the impact of conventional pulse width modulation (PWM) strategies such as space vector modulation (SVM), sinusoidal PWM (SPWM), and discontinuous PWM (DPWM). However, the impact of the recently proposed two-degree-of-freedom (2DoF) PWM has not been investigated. In this paper, the DC-link current with 2DoF interleaving PWM is analyzed by considering different modulation index and power factor range. It shows superior DC-link current performance under lower modulation index or higher power factor range comparing to the existing interleaving PWM techniques. Moreover, the influence of circulating current on the DC-link current ripple is analyzed and explained. Experiment results are obtained to verify the advantages of this proposed 2DoF interleaving PWM strategy.
DOI: 10.6084/m9.figshare.14265188
title: Protecting local water quality has global benefits - calculations illustrated

description: This is a spreadsheet showing the calculations we have made for a publication entitled "Protecting local water quality has global benefits" to published in Nature Communications. The spreadsheet gives the major equations and illustrates the way in which all calculations were performed. The analysis uses integrated assessment models to calculate the present values of methane emissions due to lake eutrophication.
DOI: 10.5517/ccdc.csd.cc26pwng
title: CCDC 2046826: Experimental Crystal Structure Determination

description: Related Article: Meng Ge, Yanzhi Wang, Francesco Carraro, Weibin Liang, Morteza Roostaeinia, Samira Siahrostami, Davide M. Proserpio, Christian Doonan, Paolo Falcaro, Haoquan Zheng, Xiaodong Zou, Zhehao Huang|2021|Angew.Chem.,Int.Ed.|60|11391|doi:10.1002/anie.202016882
DOI: 10.6084/m9.figshare.14569227
title: CaseStudy2_Images.zip

description: This file contains the images for the case study 2 continued in the book "A Practical Guide to Particle TrackinSystems - incorporating Streams" by Roger Nokes
DOI: 10.6084/m9.figshare.14569227.v1
title: CaseStudy2_Images.zip

description: This file contains the images for the case study 2 continued in the book "A Practical Guide to Particle TrackinSystems - incorporating Streams" by Roger Nokes
DOI: 10.6084/m9.figshare.14569170
title: CaseStudy1_images.zip

description: This file contains the images for Case Study 1 described in the book "A Practical Guide to Particle Tracking Systems - incorporating Streams" by Roger Noke
DOI: 10.6084/m9.figshare.14569170.v1
title: CaseStudy1_images.zip

description: This file contains the images for Case Study 1 described in the book "A Practical Guide to Particle Tracking Systems - incorporating Streams" by Roger Noke
DOI: 10.6073/pasta/02fd4debccdc8ad4c0f72d6b48db7bf5
title: Long-term monitoring of reptiles and ground arthropods near the Phoenix-Mesa Gateway Airport, Mesa, Arizona, USA, ongoing since 2010

description: Reptiles and amphibians have been monitored at the Gateway site since 2010. The goals of the project have been to provide undergraduate and graduate students opportunities to learn hands-on wildlife techniques, follow seasonal patterns of herpetofauna and ground arthropods, and serve as a test bed for new projects and technologies, including development of a mobile app for data collection. Live trapping methods include 6 trap arrays of pitfall and funnel traps placed along drift fences. Arrays are checked daily when traps are actively open to trap animals. Lizards are given a unique toe clip code, but all other species are unmarked. Reptiles and amphibians are weighed and measured and released at point of capture. Ground arthropods are counted to the Order-level. Arrays are open typically from March to October and the years vary in trapping effort with arrays open from 2 to 68 days per year. The most common species captured are tiger whiptail (*Aspidoscelis tigris*) and common side-blotched (*Uta stansburiana*) lizards.
DOI: 10.5066/p929qa95
title: Acoustic Parameters Collected in an Anechoic Chamber

description: Synthetic bat call parameters recorded in an anecolic chamber using full spectrum receivers. Data were then converted to zero-crossing format to measure parameters such as minimum, average and maximum frequency, number of echoes and number of correctly identified files
DOI: 10.6084/m9.figshare.14569245
title: SupplementalTable2.csv

description: <b>Supplemental Table 2: </b>All unique annotated metabolites.<br><br>