cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7925/drs1.duchas_4458687
title: Hidden Gold

description: Story collected by Peggie Bourke, a student at Naomh Muire, Ballyhean school (Ballyhean, Co. Mayo) from informant Mrs Winnie Ryan.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Liam Ó Duibhir.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_4629267
title: Fear na Stocaí

description: Story collected by Seán Mac An Ríogh, a student at Seanafarachán school (Shanafaraghaun, Co. Galway) from informant Máirtín Ó Choidhin.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Seán Mac An Ríogh.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_4629268
title: Story

description: Story collected by a student at Gearrbhaile (Garbh-dhoire?) school (Garbally, Co. Galway) from informant Pat Flaherty.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Mícheál Mac Giollabháin.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.6084/m9.figshare.25130414
title: PhylogeneticTree_Fig1_Cruz_et_al_ZooKeys_2024.tre

description: Original tree file used to build maximum likelihood tree (Fig 1) in Cruz et al. (Complete mitochondrial genomes of the black corals<i> </i><i>Alternatipathes mirabilis</i> Opresko & Molodtsova, 2021 and <i>Parantipathes larix</i><i> </i>(Esper, 1788) (Cnidaria, Anthozoa, Hexacorallia, Antipatharia, Schizopathidae)), which is in review at ZooKeys.
DOI: 10.6084/m9.figshare.25130414.v1
title: PhylogeneticTree_Fig1_Cruz_et_al_ZooKeys_2024.tre

description: Original tree file used to build maximum likelihood tree (Fig 1) in Cruz et al. (Complete mitochondrial genomes of the black corals<i> </i><i>Alternatipathes mirabilis</i> Opresko & Molodtsova, 2021 and <i>Parantipathes larix</i><i> </i>(Esper, 1788) (Cnidaria, Anthozoa, Hexacorallia, Antipatharia, Schizopathidae)), which is in review at ZooKeys.
DOI: 10.7925/drs1.duchas_4458691
title: Riddles

description: Story collected by Louis Walsh, a student at Naomh Muire, Ballyhean school (Ballyhean, Co. Mayo) from 3 informants.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Liam Ó Duibhir.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_4629269
title: Fathach Rua

description: Story collected by Seán Mac An Ríogh, a student at Seanafarachán school (Shanafaraghaun, Co. Galway) from informant Tomás Ó Cadhain.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Seán Mac An Ríogh.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_4629270
title: Seanscéal

description: Story collected by Áine Ní Dhonnchadha, a student at Scoil Mhic Dara Naofa, An Cheathrú Rua (Cailíní) school (Carrowroe, Co. Galway) from informant Máire Ní Dhonnchadha.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher N., Bean Uí Cholchúin.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.6084/m9.figshare.8066567
title: Table 1. Posttranslational modification on titin.pdf

description: titin posttranslational modifications
DOI: 10.6084/m9.figshare.8066612.v1
title: De novo transcript assembly of large-scale chicken RNA-Seq datasets

description: StringTie annotation of large-scale chicken RNA-Seq datasets (in GTF format)
DOI: 10.6084/m9.figshare.8066663.v1
title: tuberculosis-data-06-16.csv

description: TB treatments in the state of São Paulo collected between 2006 and 2016. Data were obtained through TBWEB, a system used for reporting and monitoring TB cases by the government in the state of São Paulo.
DOI: 10.6084/m9.figshare.8066567.v1
title: Table 1. Posttranslational modification on titin.pdf

description: titin posttranslational modifications
DOI: 10.6084/m9.figshare.8066612.v3
title: De novo transcript assembly of large-scale chicken RNA-Seq datasets

description: StringTie annotation of large-scale chicken RNA-Seq datasets (in GTF format)
DOI: 10.6084/m9.figshare.8066612.v2
title: De novo transcript assembly of large-scale chicken RNA-Seq datasets

description: StringTie annotation of large-scale chicken RNA-Seq datasets (in GTF format)
DOI: 10.6084/m9.figshare.8064020
title: Mitochondrial gene rearrangement and phylogenetic relationships in the Amphilepidida and Ophiacanthida (Echinodermata, Ophiuroidea)

description: Mitochondrial genomes provide an additional data source for nuclear phylogenomics. Recently, the taxonomic classification of Ophiuroidea was changed dramatically based on a molecular phylogenetic analysis that utilized a huge nuclear dataset of transcriptome and target-capture approaches. However, the mitochondrial genome analysis of Ophiuroidea was not conducted sufficiently in depth to allow comparison with current phylogenetic relationships, especially for the Ophintegrida. In this study, eight mitogenomes were newly reported in Amphilepidida and Ophiacanthida. Phylogenetic analyses were undertaken based on the nucleotide sequences of 13 protein coding genes (PCGs), 22 tRNA, and two rRNA, and the amino acid translated sequences of 13 PCGs. The results of the phylogenetic analysis suggested that the amino acid translated sequences were more useful than the nucleotide sequences for the analysis of higher phylogenetic relationships. The mitochondrial gene order of 13 PCGs and two rRNA in Amphilepidida and Ophiacanthida was relatively conserved. However, more complex gene orders occurred in the phylogeny of Amphilepidida and Ophiacanthida, including 22 tRNA. The results of our study suggest that Ophiuroidea has undergone more complex gene rearrangements than other classes of echinoderms.
DOI: 10.6084/m9.figshare.8064014
title: Diet and prey consumption of grey seals (<i>Halichoerus grypus</i>) in Norway

description: To obtain knowledge of feeding habits and prey consumption of grey seals, data were sampled in selected areas along the Norwegian coast. Prey were recovered from 182 grey seal gastrointestinal tracts and 199 faecal samples, collected during1999–2010 in Finnmark, Nordland and Rogaland counties. The most important prey were saithe <i>Pollachius virens</i>, cod <i>Gadus morhua</i> and wolffish <i>Anarchichus</i> spp. Wolffish was mainly eaten by seals ≥ five years old. Otherwise, the data did not suggest important temporal or spatial variations between the main prey items in the grey seal diet. However, capelin <i>Mallotus villosus</i> was eaten during spring in Finnmark suggesting that seasonally abundant pelagic fish species could be regionally important. Total annual grey seal consumption of various species was estimated using bio-energetic modelling. The input variables were seal numbers, energy demands, diet composition in terms of biomass and energy densities of prey species. Assuming the observed grey seals diet composition in the sampling areas were representative for the diet along the Norwegian coast, the mean total annual consumption by 3850 grey seals was estimated to be 8084 tons in Norwegian waters; saithe (3059 tons), cod (2598 tons) and wolffish (1364 tons) were consumed in highest quantities.
DOI: 10.6084/m9.figshare.8064020.v1
title: Mitochondrial gene rearrangement and phylogenetic relationships in the Amphilepidida and Ophiacanthida (Echinodermata, Ophiuroidea)

description: Mitochondrial genomes provide an additional data source for nuclear phylogenomics. Recently, the taxonomic classification of Ophiuroidea was changed dramatically based on a molecular phylogenetic analysis that utilized a huge nuclear dataset of transcriptome and target-capture approaches. However, the mitochondrial genome analysis of Ophiuroidea was not conducted sufficiently in depth to allow comparison with current phylogenetic relationships, especially for the Ophintegrida. In this study, eight mitogenomes were newly reported in Amphilepidida and Ophiacanthida. Phylogenetic analyses were undertaken based on the nucleotide sequences of 13 protein coding genes (PCGs), 22 tRNA, and two rRNA, and the amino acid translated sequences of 13 PCGs. The results of the phylogenetic analysis suggested that the amino acid translated sequences were more useful than the nucleotide sequences for the analysis of higher phylogenetic relationships. The mitochondrial gene order of 13 PCGs and two rRNA in Amphilepidida and Ophiacanthida was relatively conserved. However, more complex gene orders occurred in the phylogeny of Amphilepidida and Ophiacanthida, including 22 tRNA. The results of our study suggest that Ophiuroidea has undergone more complex gene rearrangements than other classes of echinoderms.
DOI: 10.6084/m9.figshare.8064014.v1
title: Diet and prey consumption of grey seals (<i>Halichoerus grypus</i>) in Norway

description: To obtain knowledge of feeding habits and prey consumption of grey seals, data were sampled in selected areas along the Norwegian coast. Prey were recovered from 182 grey seal gastrointestinal tracts and 199 faecal samples, collected during1999–2010 in Finnmark, Nordland and Rogaland counties. The most important prey were saithe <i>Pollachius virens</i>, cod <i>Gadus morhua</i> and wolffish <i>Anarchichus</i> spp. Wolffish was mainly eaten by seals ≥ five years old. Otherwise, the data did not suggest important temporal or spatial variations between the main prey items in the grey seal diet. However, capelin <i>Mallotus villosus</i> was eaten during spring in Finnmark suggesting that seasonally abundant pelagic fish species could be regionally important. Total annual grey seal consumption of various species was estimated using bio-energetic modelling. The input variables were seal numbers, energy demands, diet composition in terms of biomass and energy densities of prey species. Assuming the observed grey seals diet composition in the sampling areas were representative for the diet along the Norwegian coast, the mean total annual consumption by 3850 grey seals was estimated to be 8084 tons in Norwegian waters; saithe (3059 tons), cod (2598 tons) and wolffish (1364 tons) were consumed in highest quantities.
DOI: 10.6084/m9.figshare.8063876
title: Methods for Using Aggregate Historical Control Data in Meta-Analyses of Clinical Trials With Time-to-Event Endpoints

description: This article deals with comparing a test with a control therapy using meta-analyses of data from randomized controlled trials with a time-to-event endpoint. Such analyses can often benefit from prior information about the distribution of control group outcomes. One possible source of this information is the published aggregate data about control groups of historical trials from the medical literature. We review methods for making posterior inference about exponentially distributed event times more robust to prior-data conflicts by discounting the prior information based on the extent of observed prior-data conflict. We use simulations to compare analyses without prior information with the meta-analytic combined, meta-analytic predictive and robust meta-analytic predictive approaches, as well as Bayesian model averaging using shrinkage priors. Bayesian model averaging via shrinkage priors with well-chosen hyperpriors performed best in terms of credible interval coverage and mean-squared error across scenarios. For the robust meta-analytic predictive approach, there was little benefit in increasing the weight of the informative mixture components beyond 0.2–0.5. This was the case even when little prior-data conflict was expected, except with very sparse data or substantial between-trial heterogeneity in control group hazard rates. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.8063900
title: Pathovar specific molecular detection of <i>Xanthomonas campestris</i> pv. <i>campestris</i>, the causal agent of black rot disease in cabbage

description: Various pathovars (pv.) of <i>Xanthomonas campestris</i> (<i>Xc</i>) are prevalent in South Korea, of which pv. <i>campestris</i> causing black rot threatens the production of cabbage in this major cabbage producing country of the world. Rapid and sensitive detection of the pathovar is an essential prerequisite for any plant protection programme. This study took an approach of re-aligning the whole genome sequences (upon availability) of representative strains of the bacteria and identified pathovar-specific genomic regions that are absent in other pathovars and other bacterial strains. Herein, eight Sequence Characterized Amplified Regions (SCAR) primer sets were designed, of which three sets, namely <i>Xcc</i>_48F/R, <i>Xcc</i>_53F/R and <i>Xcc</i>_79F/R, specifically amplified all <i>Xcc</i> strains and did not amplify other pathovars and bacterial strains. These primers also detected the <i>Xcc</i> strains collected from black rot infected field samples in South Korea. After optimizing the PCR conditions, one of the primers, <i>Xcc</i>_48F/R, was able to amplify as low as 6 × 10<sup>−3</sup> ng μL<sup>−1</sup> bacterial DNA. This unique method of marker development thus yielded sensitive, specific and reliable markers that can be used for efficient and inexpensive detection of <i>Xcc</i> for purposes including quarantine and disease forecasting by early detection from asymptomatic field samples. Additionally, the method can be replicated in developing markers from other phyto-pathogenic agents for which the variable genomic regions are not known.
DOI: 10.6084/m9.figshare.8063840
title: Phase 1 Topical Application

description: Topical application data of 40 compounds against Anopheles gambiae Kisumu strain: 60 minute knock down, and 24 and 48 hour mortality observations, averaged over 3 replicates of 10 2-5 day old female adults.
DOI: 10.6084/m9.figshare.8063837
title: Phase 3 Discriminating Doses

description: 24 hour mortality data from CDC bottle bioassay dose response experiments used to calculate LC values for 11 compounds against the Kisumu strain of Anopheles gambiae.
DOI: 10.6084/m9.figshare.8063876.v2
title: Methods for Using Aggregate Historical Control Data in Meta-Analyses of Clinical Trials With Time-to-Event Endpoints

description: This article deals with comparing a test with a control therapy using meta-analyses of data from randomized controlled trials with a time-to-event endpoint. Such analyses can often benefit from prior information about the distribution of control group outcomes. One possible source of this information is the published aggregate data about control groups of historical trials from the medical literature. We review methods for making posterior inference about exponentially distributed event times more robust to prior-data conflicts by discounting the prior information based on the extent of observed prior-data conflict. We use simulations to compare analyses without prior information with the meta-analytic combined, meta-analytic predictive and robust meta-analytic predictive approaches, as well as Bayesian model averaging using shrinkage priors. Bayesian model averaging via shrinkage priors with well-chosen hyperpriors performed best in terms of credible interval coverage and mean-squared error across scenarios. For the robust meta-analytic predictive approach, there was little benefit in increasing the weight of the informative mixture components beyond 0.2–0.5. This was the case even when little prior-data conflict was expected, except with very sparse data or substantial between-trial heterogeneity in control group hazard rates. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.8063900.v2
title: Pathovar specific molecular detection of <i>Xanthomonas campestris</i> pv. <i>campestris</i>, the causal agent of black rot disease in cabbage

description: Various pathovars (pv.) of <i>Xanthomonas campestris</i> (<i>Xc</i>) are prevalent in South Korea, of which pv. <i>campestris</i> causing black rot threatens the production of cabbage in this major cabbage producing country of the world. Rapid and sensitive detection of the pathovar is an essential prerequisite for any plant protection programme. This study took an approach of re-aligning the whole genome sequences (upon availability) of representative strains of the bacteria and identified pathovar-specific genomic regions that are absent in other pathovars and other bacterial strains. Herein, eight Sequence Characterized Amplified Regions (SCAR) primer sets were designed, of which three sets, namely <i>Xcc</i>_48F/R, <i>Xcc</i>_53F/R and <i>Xcc</i>_79F/R, specifically amplified all <i>Xcc</i> strains and did not amplify other pathovars and bacterial strains. These primers also detected the <i>Xcc</i> strains collected from black rot infected field samples in South Korea. After optimizing the PCR conditions, one of the primers, <i>Xcc</i>_48F/R, was able to amplify as low as 6 × 10<sup>−3</sup> ng μL<sup>−1</sup> bacterial DNA. This unique method of marker development thus yielded sensitive, specific and reliable markers that can be used for efficient and inexpensive detection of <i>Xcc</i> for purposes including quarantine and disease forecasting by early detection from asymptomatic field samples. Additionally, the method can be replicated in developing markers from other phyto-pathogenic agents for which the variable genomic regions are not known.
DOI: 10.6084/m9.figshare.8063840.v2
title: Phase 1 Topical Application

description: Topical application data of 40 compounds against Anopheles gambiae Kisumu strain: 60 minute knock down, and 24 and 48 hour mortality observations, averaged over 3 replicates of 10 2-5 day old female adults.
DOI: 10.6084/m9.figshare.8063834
title: Phase 2 Tarsal Contact Assay

description: 60 minute knock down, and 24 and 48 hour mortality observations of Anopheles gambiae Kisumu strain exposed to insecticides applied to a glass petri dish, averaged over 3 replicates of 10 2-5 day old female adults.
DOI: 10.6084/m9.figshare.8063837.v1
title: Phase 3 Discriminating Doses

description: 24 hour mortality data from CDC bottle bioassay dose response experiments used to calculate LC values for 11 compounds against the Kisumu strain of Anopheles gambiae.
DOI: 10.6084/m9.figshare.8063840.v1
title: Raw data Phase 1 Topical Application

description: Topical application data of 40 compounds against Anopheles gambiae Kisumu strain: 60 minute knock down, and 24 and 48 hour mortality observations, averaged over 3 replicates of 10 2-5 day old female adults.
DOI: 10.6084/m9.figshare.8063876.v1
title: Methods for using aggregate historical control data in meta-analyses of clinical trials with time-to-event endpoints

description: This paper deals with comparing a test with a control therapy using meta-analyses of data from randomized controlled trials with a time-to-event endpoint. Such analyses can often benefit from prior information about the distribution of control group outcomes. One possible source of this information is the published aggregate data about control groups of historical trials from the medical literature. We review methods for making posterior inference about exponentially distributed event times more robust to prior-data conflicts by discounting the prior information based on the extent of observed prior-data conflict. We use simulations to compare analyses without prior information with the meta-analytic combined, meta-analytic predictive and robust meta-analytic predictive approaches, as well as Bayesian model averaging using shrinkage priors. Bayesian model averaging via shrinkage priors with well-chosen hyperpriors performed best in terms of credible interval coverage and mean squared error across scenarios. For the robust meta-analytic predictive approach, there was little benefit in increasing the weight of the informative mixture components beyond 0.2 to 0.5. This was the case even when little prior-data conflict was expected, except with very sparse data or substantial between-trial heterogeneity in control group hazard rates.
DOI: 10.6084/m9.figshare.8063900.v1
title: Pathovar specific molecular detection of <i>Xanthomonas campestris</i> pv. <i>campestris</i>, the causal agent of black rot disease in cabbage

description: Various pathovars (pv.) of <i>Xanthomonas campestris</i> (<i>Xc</i>) are prevalent in South Korea, of which pv. <i>campestris</i> causing black rot threatens the production of cabbage in this major cabbage producing country of the world. Rapid and sensitive detection of the pathovar is an essential prerequisite for any plant protection programme. This study took an approach of re-aligning the whole genome sequences (upon availability) of representative strains of the bacteria and identified pathovar-specific genomic regions that are absent in other pathovars and other bacterial strains. Herein, eight Sequence Characterized Amplified Regions (SCAR) primer sets were designed, of which three sets, namely <i>Xcc</i>_48F/R, <i>Xcc</i>_53F/R and <i>Xcc</i>_79F/R, specifically amplified all <i>Xcc</i> strains and did not amplify other pathovars and bacterial strains. These primers also detected the <i>Xcc</i> strains collected from black rot infected field samples in South Korea. After optimizing the PCR conditions, one of the primers, <i>Xcc</i>_48F/R, was able to amplify as low as 6 × 10<sup>−3</sup> ng μL<sup>−1</sup> bacterial DNA. This unique method of marker development thus yielded sensitive, specific and reliable markers that can be used for efficient and inexpensive detection of <i>Xcc</i> for purposes including quarantine and disease forecasting by early detection from asymptomatic field samples. Additionally, the method can be replicated in developing markers from other phyto-pathogenic agents for which the variable genomic regions are not known.
DOI: 10.6084/m9.figshare.8063831
title: Phase 2 Tarsal Contact Assay - Supplementary Data

description: 60 minute knock down, and 24 and 48 hour mortality observations of Anopheles gambiae Kisumu strain exposed to insecticides applied to a glass petri dish, averaged over 3 replicates of 10 2-5 day old female adults.
DOI: 10.6084/m9.figshare.8063831.v2
title: Phase 2 Tarsal Contact Assay - Supplementary Data

description: 60 minute knock down, and 24 and 48 hour mortality observations of Anopheles gambiae Kisumu strain exposed to insecticides applied to a glass petri dish, averaged over 3 replicates of 10 2-5 day old female adults.
DOI: 10.6084/m9.figshare.8063831.v1
title: Phase 2 Tarsal Contact Assay - Supplementary Data

description: 60 minute knock down, and 24 and 48 hour mortality observations of Anopheles gambiae Kisumu strain exposed to insecticides applied to a glass petri dish, averaged over 3 replicates of 10 2-5 day old female adults.
DOI: 10.6084/m9.figshare.8063738
title: Dataset - Gambler's fallacy - Matarazzo et al..sav

description: Dataset of the study "<b> The gambler’s fallacy in problem and non-problem gamblers".</b>
DOI: 10.6084/m9.figshare.8063624
title: SLEUTH model data

description: Data includes the urban layer, the slope layer, the hill-shade layer, the transportation layer and the exclusion layers for three scenarios.
DOI: 10.6084/m9.figshare.8063726
title: parins-fukuchi_supp.zip

description: raw data and scripts from a submitted paper<br>