cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rrne1d
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000318-150204170955391/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zekjyo
title: Occurrence Download

description: A dataset containing 58545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens tripartita L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 58545 records from 187 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012158-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/501-jlx-nzg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fbm-mag-4jc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/858-ptv-8sj
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m9r-l4m-84e
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/32j-4jn-vwz
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lbj-xgp-yha
title: Echinoidea Schumacher, 1817

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/50s-ll7-aae
title: Baggina Cushman, 1926

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/65t-sjv-31m
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gkx-aay-6d2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mmh-wes-8ha
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xd9-gct-n4c
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dqx-sj3-5zk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ej2-6lj-653
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3wz-e9h-sms
title: Carpenteria Gray, 1858

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/806-wga-j36
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kw6-c6a-bh5
title: †Nummulites variolarius (Lamarck, 1804)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sld-qxa-1h3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sv0-r7j-d44
title: Trilobatus sacculifer (Brady, 1877)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1em-e0y-msq
title: Cycloclypeus carpenteri Brady, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f0z-j6z-wxv
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d77-66k-t45
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kyq-dml-gzv
title: †Nummulites intermedius (d'Archiac, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/515-t8k-tdt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wv1-544-h49
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16738645
title: Scripts and data for : A comparative analysis of hybridisation capture and PCR-based eDNA metabarcoding for monitoring bryophytes in riparian ecosystems

description: Additional data to "A comparative analysis of hybridisation capture and PCR-based eDNA metabarcoding for monitoring bryophytes in riparian ecosystems"
DOI: 10.5281/zenodo.16738646
title: Scripts and data for : A comparative analysis of hybridisation capture and PCR-based eDNA metabarcoding for monitoring bryophytes in riparian ecosystems

description: Additional data to "A comparative analysis of hybridisation capture and PCR-based eDNA metabarcoding for monitoring bryophytes in riparian ecosystems"
DOI: 10.3535/qv6-fkz-fj3
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.63bdw9
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Azadirachta indica",
 "Country is Senegal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 59 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022014-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1hm-q5r-lfb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xrh-z2c-119
title: †Spiroclypeus leupoldi van der Vlerk, 1925

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3ac-pv0-geq
title: Sequoia Endl.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a7r-rym-15m
title: †Spiroclypeus margaritatus (Schlumberger, 1902)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rgn-s21-bev
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9sc-exc-4ce
title: Sphaerogypsina globulus (Reuss, 1848)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/px5-jjm-e3q
title: Elphidium Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0w7-a78-859
title: Cycloclypeus W.B. Carpenter, 1856

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1zz-2yn-62y
title: Cycloclypeus carpenteri Brady, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5lc-vq2-n4t
title: Cycloclypeus carpenteri Brady, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hbe-c5h-bme
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dje-00l-5j2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pr0-yms-qww
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q7q-c0z-gxc
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r9c-2eh-rkj
title: Nummulites venosus (Fichtel & Moll, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cls-cq0-kah
title: Cycloclypeus carpenteri Brady, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mj6-blk-ynr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/stw-c9k-klq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.9nrw9f
title: Occurrence Download

description: A dataset containing 36296 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isodon (Schrad. ex Benth.) Spach"
 ]
}

 The dataset includes 36296 records from 279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004534-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c54j0b92d
title: MassIVE MSV000097786 - In-cell processing enables rapid and deep plant proteome analysis
title: We recently developed an on-filter in-cell (OFIC) processing method for shotgun proteomics sample preparation. The method does not require cell lysis and protein extraction; instead, it digests proteins directly in the cells after they are fixed by methanol, presenting a simple yet effective method for global proteome analysis. In our previous studies, we showcased the OFIC method using mammalian cells, yeasts, and worms. Here, we applied the in-cell digestion method to plant leaves, which have thick cell walls that make them difficult to extract proteins for proteomics. Conventional physical disruption methods such as sonication and grinding with liquid nitrogen may lysis leaves effectively, but usually involves significant sample loss and requires a large initial input. We utilized Arabidopsis thaliana leaves for the evaluation of the OFIC method, and included SDS-based lysis method as control. We used single rosette leaves for each digestion experiment, and include four replicates for each method. To demonstrate the wide applicability of the method, we further analyzed leaves from Nicotiana benthamiana, maize, and sorghum bicolor. Lastly, we applied the method to identify the proteome-wide responses of N. benthamiana infected with the fungus, Colletotrichum. For LC-MS/MS analysis, we employed an Ultimate 3000 RSLCnano system coupled with an Orbitrap Eclipse mass spectrometer and FAIMS Pro Interface. We acquired the MS data using data-independent acquisition (DIA) mode, and processed them using Spectronaut software (version 19.2) and a library-free DIA workflow with directDIA+ algorithm.
DOI: 10.15468/dl.u9hsjw
title: Occurrence Download

description: A dataset containing 180626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Psittacara leucophthalmus (Müller & Pls, 1776)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 180626 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012429-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqscvs
title: Occurrence Download

description: A dataset containing 15727 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Juniperus scopulorum"
 ]
}

 The dataset includes 15727 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006870-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/24710
title: Chandra X-ray Observatory ObsId 24710

description: Chandra Followup Observations of Stripped Envelope Supernovae
DOI: 10.25574/24715
title: Chandra X-ray Observatory ObsId 24715

description: A snapshot survey of two remarkable AGN classes: Quasars with large CIV EW and super-Eddington accreting AGNs
DOI: 10.25574/24732
title: Chandra X-ray Observatory ObsId 24732

description: AMUSE-Antlia: Nuclear X-ray Properties of Early-Type Galaxies in the Nearest None Cool Core Cluster
DOI: 10.25574/25017
title: Chandra X-ray Observatory ObsId 25017

description: Cycle 22 Cold ECS Measurements
DOI: 10.25574/25018
title: Chandra X-ray Observatory ObsId 25018

description: Cycle 22 Cold ECS Measurements
DOI: 10.15468/dl.jsenxx
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "DatasetKey is INSDC Sequences",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anopheles darlingi"
 ]
}

 The dataset includes 124 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020356-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29840021
title: <b>Hard Internal Support Technique for Transradial Intracranial Aneurysm Embolization: Technical Nuances and Outcomes</b>

description: Our center developed the Hard Internal Support (HIS) technique, combining multiple devices (e.g., 5F Simmons2 catheters/reshaped multipurpose catheters, V18 guidewires, hydrophilic guidewires) to optimize radial access. It comprises two components: support-assisted positioning and internal support reinforcement. This technique enhances support for 6F intermediate catheters without external reinforcement, addressing unmet needs in TRA neurointerventions.
DOI: 10.6084/m9.figshare.29840021.v1
title: <b>Hard Internal Support Technique for Transradial Intracranial Aneurysm Embolization: Technical Nuances and Outcomes</b>

description: Our center developed the Hard Internal Support (HIS) technique, combining multiple devices (e.g., 5F Simmons2 catheters/reshaped multipurpose catheters, V18 guidewires, hydrophilic guidewires) to optimize radial access. It comprises two components: support-assisted positioning and internal support reinforcement. This technique enhances support for 6F intermediate catheters without external reinforcement, addressing unmet needs in TRA neurointerventions.
DOI: 10.15468/dl.ace2ff
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Casuarina glauca",
 "Country is Myanmar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020357-250802193616735/datasets/export for details.
DOI: 10.15468/dl.r4d8fs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Casuarina glauca",
 "Country is Nigeria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020358-250802193616735/datasets/export for details.
DOI: 10.6084/m9.figshare.29468272
title: DNA methylation studies in mouse models of depression: a systematic review

description: Major depression (MD) is caused by both genetic and environmental factors. Epigenetic mechanisms, particularly DNA methylation (5mC) and hydroxymethylation (5hmC), are thought to mediate gene – environment interactions. However, findings in mouse models remain dispersed. This review evaluates the studies on 5mC and 5hmC in mouse models of depression. We systematically searched PubMed, Scopus, and Web of Science using terms related to 5mC/5hmC, depression, and mouse, until December 2024. We grouped the articles as candidate, global, cellular, and comprehensive studies and summarized the findings accordingly. Sixty-eight studies met inclusion criteria. The main findings were environmental models, especially chronic stress paradigms, which were most frequently used to induce depression models. Candidate gene studies focused on Bdnf and Nr3c1, while global and cellular assays revealed both regional and widespread 5mC/5hmC changes. Genome-wide approaches revealed that epigenetic changes are not limited to isolated loci rather affect broad genomic regions involved in neural development and plasticity. This review provides a comprehensive summary of existing research on epigenetic changes in terms of DNA methylation in mouse models of depression. Broader application of standardized, integrative, and cell-type-specific approaches is needed to fully elucidate the role of epigenetic regulation in the pathology of MD. Depression is a major mental health problem, often triggered by stress. Researchers have found that changes to DNA activity – without changing the DNA itself – may play a role. These changes, known as DNA methylation, can affect how genes work. This review looked at 68 studies using mice with depression-like behaviors. Many showed that stress changes DNA methylation in brain regions linked to mood. Key genes involved in stress response and brain function were often affected. The findings suggest that stress may leave lasting marks on DNA, helping explain how depression develops. More consistent research methods are needed to fully understand these effects.
DOI: 10.6084/m9.figshare.29468272.v1
title: DNA methylation studies in mouse models of depression: a systematic review

description: Major depression (MD) is caused by both genetic and environmental factors. Epigenetic mechanisms, particularly DNA methylation (5mC) and hydroxymethylation (5hmC), are thought to mediate gene – environment interactions. However, findings in mouse models remain dispersed. This review evaluates the studies on 5mC and 5hmC in mouse models of depression. We systematically searched PubMed, Scopus, and Web of Science using terms related to 5mC/5hmC, depression, and mouse, until December 2024. We grouped the articles as candidate, global, cellular, and comprehensive studies and summarized the findings accordingly. Sixty-eight studies met inclusion criteria. The main findings were environmental models, especially chronic stress paradigms, which were most frequently used to induce depression models. Candidate gene studies focused on Bdnf and Nr3c1, while global and cellular assays revealed both regional and widespread 5mC/5hmC changes. Genome-wide approaches revealed that epigenetic changes are not limited to isolated loci rather affect broad genomic regions involved in neural development and plasticity. This review provides a comprehensive summary of existing research on epigenetic changes in terms of DNA methylation in mouse models of depression. Broader application of standardized, integrative, and cell-type-specific approaches is needed to fully elucidate the role of epigenetic regulation in the pathology of MD. Depression is a major mental health problem, often triggered by stress. Researchers have found that changes to DNA activity – without changing the DNA itself – may play a role. These changes, known as DNA methylation, can affect how genes work. This review looked at 68 studies using mice with depression-like behaviors. Many showed that stress changes DNA methylation in brain regions linked to mood. Key genes involved in stress response and brain function were often affected. The findings suggest that stress may leave lasting marks on DNA, helping explain how depression develops. More consistent research methods are needed to fully understand these effects.
DOI: 10.6084/m9.figshare.29646771
title: Epigenetic silencing of JAM3 promoted progression in serous ovarian carcinoma through PI3K/AKT pathway

description: Junctional adhesion molecule 3 (JAM3) is frequently epigenetically silenced in various cancers, but its role in serous ovarian carcinoma (SOC) was unclear. This study evaluated JAM3 expression and methylation in SOC using immunohistochemistry (IHC), bisulfite sequencing PCR (BSP), and quantitative methylation-specific PCR (qMSP). Cell proliferation, apoptosis, migration, and invasion were examined using CCK8, flow cytometry, scratch-wound, and transwell assays. Pathways downstream of JAM3 were explored through RNA sequencing (RNA-seq) and Western Blot analysis, with rescue experiments using AKT inhibitor (MK2206) to validate pathway dependency. Findings revealed that JAM3 expression is significantly reduced in SOC, correlating with advanced clinical stages and poor prognosis. Methylation levels of the JAM3 promoter were higher in SOC samples compared to normal tissues and were linked to increased Ki67 expression and clinical stages. Functionally, overexpressing JAM3 in SOC cells triggered apoptosis and hindered proliferation, migration, and invasion, whereas JAM3 knockdown produced opposite effects. Mechanism analysis demonstrated that JAM3 affects SOC cell proliferation through the PI3K/AKT signaling pathway. Conclusively, JAM3 acts as a tumor suppressor in SOC by modulating the PI3K/AKT pathway. These insights present JAM3 as a promising therapeutic target for SOC diagnosis and treatment.
DOI: 10.6084/m9.figshare.29646771.v1
title: Epigenetic silencing of JAM3 promoted progression in serous ovarian carcinoma through PI3K/AKT pathway

description: Junctional adhesion molecule 3 (JAM3) is frequently epigenetically silenced in various cancers, but its role in serous ovarian carcinoma (SOC) was unclear. This study evaluated JAM3 expression and methylation in SOC using immunohistochemistry (IHC), bisulfite sequencing PCR (BSP), and quantitative methylation-specific PCR (qMSP). Cell proliferation, apoptosis, migration, and invasion were examined using CCK8, flow cytometry, scratch-wound, and transwell assays. Pathways downstream of JAM3 were explored through RNA sequencing (RNA-seq) and Western Blot analysis, with rescue experiments using AKT inhibitor (MK2206) to validate pathway dependency. Findings revealed that JAM3 expression is significantly reduced in SOC, correlating with advanced clinical stages and poor prognosis. Methylation levels of the JAM3 promoter were higher in SOC samples compared to normal tissues and were linked to increased Ki67 expression and clinical stages. Functionally, overexpressing JAM3 in SOC cells triggered apoptosis and hindered proliferation, migration, and invasion, whereas JAM3 knockdown produced opposite effects. Mechanism analysis demonstrated that JAM3 affects SOC cell proliferation through the PI3K/AKT signaling pathway. Conclusively, JAM3 acts as a tumor suppressor in SOC by modulating the PI3K/AKT pathway. These insights present JAM3 as a promising therapeutic target for SOC diagnosis and treatment.