cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6386952
title: A dataset of published journal papers using neural networks for seismological tasks.

description: This is a dataset of 637 journal papers applying neural networks for various tasks in seismology spanning January 1988 to January 2022. The dataset mainly includes peer reviewed papers and does not contain duplicated works. It follows a hierarchical classification of papers based on seismological tasks (i.e. category, sub_category_I, sub_category_II, task, and sub_task). For each paper following information are provided: 1) first author's last name, 2) publication year, 3) paper's title, 4) journal 's name, 5) machine learning method used, 6) the type of used neural network, 7) the name of neural network architecture, 8) the number of neurons/kernels in each hidden layer, 9) type of training process, i.e. supervised, semi-supervised, etc, 10) input data into the network, 11) output data, 12) data domain, i.e. time, frequency, feature, etc, 13) the type of data used for training, e.g. synthetic or real data, 14) the size of training set, 15) the metrics used to measure the performance, 16) performance scores, 17) the baseline method used for evaluation, and 18) a short note summarizing the paper's objective, its approach, and its significance. An updating version of the dataset can be find from here: https://smousavi05.github.io/dl_seismology/ and here:https://github.com/smousavi05/dl_seismology/tree/main/docs. An updating glossary of seismological tasks and relevant machine learning techniques and papers are provided here: https://smousavi05.gitbook.io/mlseismology/
DOI: 10.6084/m9.figshare.26983963
title: VL VM - grids

description: Mat files with EMG signals recorded from the vastus medialis and vastus lateralis with one grid of 64 surface electrodes per muscle and edited motor unit pulse trains.
DOI: 10.17909/t90w2b
title: Cluster Lensing And Supernova survey with Hubble ("CLASH")

description: By observing 25 massive galaxy clusters with HST's panchromatic imaging capabilities (Wide-field Camera 3, WFC3, and the Advanced Camera for Surveys, ACS), CLASH will accomplish four primary science goals.  The CLASH Multi-Cycle Treasury program (12065 PI: Marc Postman) observed 25 clusters over a three-year period. The team was awarded a total of 524 orbits of HST to conduct this program, and provide images, catalogs, and lens models.
DOI: 10.18112/openneuro.ds004100.v1.1.1
title: HUP iEEG Epilepsy Dataset
DOI: 10.21966/d1s2-s530
title: Nereocystis kelp canopy productivity data from BC Central Coast

description: The nereocystis canopy production dataset is a component of Hakai Institute’s Nearshore research and monitoring program. This dataset documents seasonal changes in Nereocystis luetkeana density, size structure and growth parameters at multiple locations near Calvert Island on the Central Coast of British Columbia (BC) since 2016. Each year, sites were visited 1 - 5 times over the summer months (April-September) and 0 - 2 times over the winter months. Fifteen plants were tagged at each site to measure individual stipe growth, blade elongation, blade erosion, change in number of blades and plant survival. Additional plants (up to 45 per site) were measured for stipe and blade size structure distributions. Three permanent transect lines were used to track change in plant density and relocate the tagged plants. Blade growth rate ranged from 0 to 15 cm per day through the summer months and stipe growth ranged from 0 to 12 cm a day, depending on site and time of year. Based on these data we can determine which field parameters best correlate with overall kelp productivity and biomass, to refine metrics for long-term assessments of Nereocystis luetkeana status in BC and ultimately find what environment factors are driving these local temporal and spatial trends. This data package is freely available to everyone, following the principles of equitable access and benefit sharing. However, we expect all data users to give attribution to the data providers (read our data license) and the use of these data should happen in the light of fair use, i.e.: 1) respect the data providers, and provide helpful feedback on data quality, and 2) communicate and/or collaborate with the providers if you are considering using this dataset for manuscripts or other forms of reporting.
DOI: 10.25966/564j-4331
title: Version 7 Final 24-Hour IMERG GIS 
title: 3IMERGD_GIS
title: Final IMERG Daily GIS-formatted

description: This dataset provides, in a GIS-friendly format, the surface precipitation estimates and precipitation-phase information covering 24 hour periods at 0.1-degree resolution from April 2000 to a few months before the present.  The parent of this GIS product is the half-hour IMERG HDF5 data product. This GIS product is a zip file that contains two-byte TIFF files accompanied by ESRI WorldFile metadata.  The TIFF files contain either scaled units of precipitation accumulation (millimeters), scaled units of precipitation rate (millimeters per hour), or the percent likelihood that 100% of the precipitation in a particular gridbox fell as liquid or mixed phase precipitation (i.e., not 100% solid-phase precipitation).  The grid covers the entire Earth, 90S to 90N and 180W to 180E although precipitation is not always estimated near the poles.
DOI: 10.5281/zenodo.10023631
title: TESS-validated Gaia DR3 Pulsating Variables of δ Scuti and γ Doradus: II. 360+ Eclipsing Binaries with δ Scuti and γ Doradus Components

description: I present serendipitous discoveries of 380 eclipsing binaries with δ Scuti and γ Doradus pulsators, 46 eclipsing binaries exhibiting rotational variability, and 8 new RR Lyrae stars,  identified for the first time during a validation project of pulsating variables from Gaia Data Release 3. Gaia DR3 Part 4 Variability released 12.4 million variables, including 748,058 pulsating variable stars of `DSCT|GDOR|SXPHE' types among the variability classification results of all classifiers -- 9,976,881 objects (in the file vclassre.dat, https://cdsarc.cds.unistra.fr/viz-bin/cat/I/358}). Among 75,369 analyzed stars,  I confirmed 12,145 δ Scuti stars (including 8,710 new) and 8,192 γ Doradus stars (including 7,531 new). This work has significantly expanded the bona fide DSCT and GDOR catalogs to include 98,968 and 19,466 stars, respectively, providing a valuable resource for future studies. The discovery of the remarkable number of pulsating binaries underscores the significance of this project in validating Gaia’s variable star catalog. 




The attached CSV files report the current validation results. If you use any data from the catalogs in your research, I appreciate your citation to the paper: 

Zhou, A.-Y., 2024, Research Notes of the AAS, Volume 8, Number 4, 110 (ADS bibcode: 2024RNAAS...8..110Z) 



CSV file GaiaDR3_vari_DSCTgDorSXPhe_Validated_R2_NewEB_Pul.csv for the newly identified Eclipsing Binaries with Pulsating components;

CSV file GaiaDR3_vari_DSCTgDorSXPhe_Validated_R2.csv for the entire validated and newly identified results from 75,369 analyzed samples.


This is a developing story. Check back for updates.
DOI: 10.5281/zenodo.10060590
title: Gridded runoff and evapotranspiration dataset for seven major river basins of the Tibetan Plateau during 1998-2017

description: This data set describes the spatiotemporal distribution of runoff and evapotranspiration for the headwater of seven river basins (the Yellow, Yangtze, Mekong, Salween, Brahmaputra, Ganges, and Indus) in the Tibetan Plateau. This was achieved using an observation-constrained distributed cryosphere-hydrology model, known as the WEB-DHM. The time range is 1998-2017 at a monthly scale, the spatial resolution is 5km×5km, and the unit is mm/month. 
For the convenience of users, this data is stored in TIF format, with each combination of different watersheds forming a separate file. Each file contains two variable: either runoff or evapotranspiration. These files can be opened with ArcGIS, Python, R, and other tools.
DOI: 10.5281/zenodo.10137063
title: North Carolina Outer Banks, USA Coastal Foredune Sediment Cores - Grain Size Data & Core Log Descriptions

description: This repository includes sediment core data collected at seven sites along the northern Outer Banks, North Carolina, USA. From north to south, the sites include Pine Island, Corolla Reserve, Duck, the US Army Corps of Engineers Field Research Facility (FRF) North, FRF South, Southern Shores (i.e., Hillcrest Beach Access), and Nags Head (Bonnett St. Beach Access).
At each site, internal dune sedimentology and stratigraphy were characterized using sediment vibracores, each 1.5–2.2 m long, collected along a cross-shore transect from the dune toe to the dune heel. Coring locations were selected based on dune morphology to capture the stratigraphy of the dune toe, stoss slope, primary dune crest, lee slope, swale, and secondary dune crest, as applicable. Sediment core locations were documented using RTK-GPS and are included in the .kmz file.
All sediment cores were split, photographed, described for sedimentary structures, texture (as compared to standards), mineralogy, and color (Munsell, 2012). Sediment cores were described using the Modified Burmister System in 10-cm intervals, with additional intervals added as needed to capture stratigraphic units with thicknesses less than 10 cm but greater than 1 cm. Sediment core log descriptions are included in the NOAA_NCDunes_Vibracore_CoreLogs.xlsx data file.
Sediment size and shape were analyzed from oven-dried samples using a CAMSIZERX2Ⓡ. These data are included in the Dune_Grain_Size_camsizer_outputs.csv data file. Metrics reported for each sample include the following: Site, Core ID, Sample Number, Depth (cm below ground surface), Elevation (m, NAVD88), D2 (mm), D5 (mm), D10 (mm), D16 (mm), D25 (mm), D50 (mm), D75 (mm), D84 (mm), D90 (mm), D95 (mm), D98 (mm), average grain symmetry, average grain sphericity, average grain aspect ratio, percent pebble, percent granule, percent very coarse sand, percent coarse sand, percent medium sand, percent fine sand, percent very fine sand, and percent silt.
More details regarding these measurements can be found in the following manuscript:
Davis, E.H., Hein, C.J., Cohn, N., White, A.E., Zinnert, J.C. Differences in internal sedimentologic and biotic structure between natural, managed, and constructed coastal foredunes (in review).
DOI: 10.5281/zenodo.10815642
title: CLASI Nearshore Air-Sea Observations

description: Data from the ISPARs deployed as part of the CLASI project.
DOI: 10.5281/zenodo.13282931
title: Files–Preselection of potential target spaces based on partial information by the supplementary eye field
DOI: 10.5281/zenodo.13304940
title: Genome assembly and annotation of an apple variety 'RubyMac'

description: In this dataset, we provided the contig-level genome assembly and annotation of an apple tree called 'RubyMac', which is growing in Michigan, USA (43°04'53.1"N 85°43'13.5"W). In this tree, the upper branches carried a sport mutation as compared with lower branches.
DOI: 10.5281/zenodo.13616448
title: Modelled temperature, mortality impact, and external benefits of cool roofs and rooftop photovoltaics in London - supporting data

description: Supporting data for "Modelled temperature, mortality impact, and external benefits of cool roofs and rooftop photovoltaics in London"

Included are outputs from the Weather Research and Forecast (WRF) model. All simulations cover London, United Kingdom over summer 2018. Scenarios include a "baseline" which represents the real urban climate of the region, and scenarios which model 100% coverage of rooftops with either high albedo materials or solar panels. Data are provided in netCDF format.



The baseline simulation which models the current urban climate of the region WRF_Urb_BouLac_T2-V10-U10_20180525-20180831.nc

The 100% rooftop-solar simulation WRF_Urb_BouLac_PV_T2-V10-U10-PSFC-RAINNC-TH2-Q2_20180525-20180831.nc

The 100% high-albedo roof simulation WRF_Urb_BouLac_ClRf_T2-V10-U10-PSFC-RAINNC-TH2-Q2_20180525-20180831.nc

The non-urban scenario is in WRF_NoUrb_BouLac_T2-V10-U10-PSFC-RAINNC-TH2-Q2_20180525-20180831.nc

The power production estimates solarpv_prod_2018.nc

wrf_popweighting-main.zip contains the analysis code. It is provided as-is with no guarantee of usability.


T2 means air temperature at 2m height. V10 and U10 are windspeeds at 10m height. PSFC is surface level pressure. TH2 is potential temperature. Q2 is specific humidity at 2m height.

More description of the simulations is given in the citing article.
DOI: 10.6073/pasta/eb37cd72ccaa3e9197c461f0c1c734eb
title: Multiple Element Limitation in Northern Hardwood Experiment (MELNHE): Soil respiration at Hubbard Brook Experimental Forest, Bartlett Experimental Forest and Jeffers Brook, central NH USA, 2008 - present

description: Abstract

 
 Soil respiration in 15 stands across 3 sites within the White Mountain
 National Forest was measured between 2008 and 2020. Stands included in
 the dataset are part of the Multiple Element in Northern Hardwood
 Ecosystems (MELNHE) study, a full-factorial NxP fertilization
 experiment. Pre- and post-treatment data are included, with treatment
 beginning in 2011. Soil temperature, soil moisture, and relative air
 humidity at the time of measurement were also recorded next to or
 above the soil respiration collar at the time of the soil respiration
 measurement. Having been cut between 1883 and 1990, stands are
 representative of different successional stages.
DOI: 10.6084/m9.figshare.26083456
title: Supplementary Material for: Whole-genome sequencing reveals a novel pathogenic GRIN2B variant in a patient with neurodevelopmental disorder and an inv(6)(p24p11.2)pat

description: Introduction: Neurodevelopmental disorders (NDDs) are diverse and can be explained by either genomic aberrations or single nucleotide variants (SNVs). Most likely due to methodological approaches and/or disadvantages, the concurrence of both genetic events in a single patient has hardly been reported and even more rarely the pathogenic variant has been regarded as the cause of the phenotype when a chromosomal alteration is initially identified. Case Presentation: Here, we describe a NDD patient with a 6p non-pathogenic paracentric inversion paternally transmitted and a de novo pathogenic variant in the GRIN2B gene. Molecular-cytogenetic studies characterized the familial 6p inversion and revealed a paternal 9q inversion not transmitted to the patient. Subsequent whole-genome sequencing (WGS) in the patient-father dyad corroborated the previous findings, discarded inversions-related cryptic genomic rearrangements as causative of the patient’s phenotype, and unveiled a novel heterozygous GRIN2B variant (p.(Ser570Pro)) only in the proband. In addition, Sanger sequencing ruled out such a variant in her mother and thereby confirmed its de novo origin. Due to predicted disturbances in the local secondary structure, this variant may alter the ion channel function of the M1 transmembrane domain. Other pathogenic variants in GRIN2B have been related to the autosomal dominant neurodevelopmental disorder MRD6 (Intellectual developmental disorder, autosomal dominant 6, with or without seizures), which presents with a high variability ranging from mild intellectual disability (ID) without seizures to a more severe encephalopathy. In comparison, our patient's clinical manifestations include, among others, mild ID and brain anomalies previously documented in subjects with MRD6. Conclusion: Occasionally, gross chromosomal abnormalities can be coincidental findings rather than a prime cause of a clinical phenotype (even though they appear to be the causal agent). In brief, this case underscores the importance of comprehensive genomic analysis in unraveling the wide-ranging genetic causes of NDDs and may bring new insights into the MRD6 variability.
DOI: 10.6084/m9.figshare.26879323
title: Supplementary Material for: Validation of the Portuguese version of IBD-Control questionnaire and comparison with IBD-Disk

description: Introduction: The IBD-Control questionnaire and IBD-Disk are two patient-reported outcome measures designed to evaluate the impact of Inflammatory Bowel Disease (IBD) on different health domains. Unlike IBD-Disk, there is no fully published validated Portuguese version of IBD-Control. Furthermore, the two instruments have not yet been compared. We aimed to translate and validate IBD-Control in Portugal and compare it with IBD-Disk.
Methods: After translation into Portuguese, the IBD-Control was administered to IBD patients, at baseline (T0), after 1-4 weeks (T1) and 3 months (T2). Patients also completed the Portuguese versions of the PRO2, EQ-5D, short-IBDQ and IBD-Disk. We assessed reliability, validity, responsiveness and interpretability of IBD-Control. We compared the usability (3 questions) and the ability to identify good disease control (AUC) of IBD-Control and IBD-Disk.
Results: At T0, the IBD-Control was completed by 142 patients (108 Crohn's disease, 34 ulcerative colitis). At T1 and T2, 68 and 101 patients completed the questionnaire, respectively. Factor analysis confirmed the one-dimensionality of the scale with 8 items (IBD-Control-8). Internal consistency (Cronbach's alpha) was 0.80. Test-retest reproducibility for stable patients (n=54) was high (intraclass correlation coefficient-0.86). IBD-Control-8 significantly correlated (r between 0.55 and 0.82; p≤0.001) with PRO2, EQ-5D, short-IBDQ and IBD-Disk. The variation in IBD-Control-8 between T0 and T2 correlated significantly (r between 0.48 and 0.53; p≤0.01) with the variation in PRO2 (only for Crohn's disease), short-IBDQ and IBD-Disk. The IBD-Control-8 significantly discriminated between well and poorly controlled disease (15±2 vs 11±4; p&lt;0.001). No significant differences were observed between IBD-Control-8 and IBD-Disk regarding usability and the ability to identify good disease control (AUC-0.79 vs 0.76, respectively).
Conclusions: The IBD-Control is reliable and valid for measuring disease control from the perspective of patients with IBD in Portugal, presenting no significant differences regarding usability and assessment of disease control when compared to IBD-Disk.
DOI: 10.6084/m9.figshare.26935678
title: Supplementary Material for: Identification of renal ischemia reperfusion injury subtypes and predictive model for graft loss after kidney transplantation based on programmed cell death-related genes

description: Introduction：Ischemia reperfusion injury (IRI) is detrimental to kidney transplants and may contribute to poor long-term outcomes of transplantation. Programmed cell death (PCD), a regulated cell death form triggered by IRI, is often indicative of an unfavorable prognosis following transplantation. However, given the intricate pathophysiology of IRI and the considerable variability in clinical conditions during kidney transplantation, the specific patterns of cell death within renal tissues remain ambiguous. Consequently, accurately predicting the outcomes for transplanted kidneys continues to be a formidable challenge. Methods：Eight Gene Expression Omnibus (GEO) datasets of biopsied transplanted kidney samples post IRI and 1548 PCD-related genes derived from 18 PCD patterns were collected in our study. Consensus clustering was performed to identify distinct IRI subtypes based on PCD features (IRI PCD subtypes). Differential enrichment analysis of cell death, metabolic signatures, and immune infiltration across these subtypes was evaluated. Three machine learning algorithms were used to identify PCD patterns related to prognosis. Genes associated with graft loss were screened for each PCD type. A predictive model for graft loss was constructed using 101 combinations of 10 machine learning algorithms. Results：Four IRI subtypes were identified: PCD-A, PCD-B, PCD-C, and PCD-D. PCD-A, characterized by high enrichment of multiple cell death patterns, significant metabolic paralysis, and immune infiltration, showed the poorest prognosis among the four subtypes. While PCD-D involved the least kind of cell death patterns with the features of extensive activation of metabolic pathways and the lowest immune infiltration, correlating with the best prognosis in the four subtypes. Using various machine learning algorithms, 10 cell death patterns and 42 PCD-related genes were identified positively correlated with graft loss. The predictive model demonstrated high sensitivity and specificity, with area under the curve (AUC) values for 0.5-, 1-, 2-, 3-, and 4-year graft survival at 0.888, 0.91, 0.926, 0.923, and 0.923, respectively. Conclusion：Our study explored the comprehensive features of PCD patterns in transplanted kidney samples post IRI. The prediction model shows great promise in forecasting graft loss and could aid in risk stratification in patients following kidney transplantation.
DOI: 10.6084/m9.figshare.26983615
title: GL GM - grids

description: Mat files with EMG signals recorded from the gastrocnemius medialis and gastrocnemius lateralis with one grid of 64 surface electrodes per muscle and edited motor unit pulse trains.
DOI: 10.6084/m9.figshare.3385456.v1
title: #JeNeSuisPaCharlie

description: Following a shooting attack by two self-proclaimed Islamistgunmen at the offices of French satirical weekly Charlie Hebdo on 7th January 2015, there emerged the hashtag #JeSuisCharlie on Twitter as an expression of condolences for the victims, solidarity, and support for the magazine’s right to free speech. Almost simultaneously, however, there was also #JeNeSuisPasCharlie explicitly countering the former, affirmative hashtag. The dataset contains a complete set of the 74,047 ids of tweets containing #JeNeSuisPasCharlie posted between 7th and 11th January and retrieved by purchasing the dataset from Gnip trough Sifter.
DOI: 10.17632/7t5jg4ms99.1
title: day ahead electricity price data

description: This data is collected from the IEX electricity market.
DOI: 10.17632/g23k3t8c83.1
title: Thoudam et al, 2022, Noncanonical PDK4 action alters mitochondrial dynamics to affect the cellular respiratory status

description: Datasets related to the study "Noncanonical PDK4 action alters mitochondrial dynamics to affect the cellular respiratory status" by Thoudam, Chanda et al. 2022, in the journal PNAS
DOI: 10.17909/g809-wf30
title: TESS asteroseismology of beta Hydri

description: TESS target pixel files were used for an asteroseismic detection in beta Hydri.
DOI: 10.18727/archive/68
title: The VVV eXtended ESO Public Survey

description: The ESO Public Survey VISTA Variables in the Via Lactea (VVV, https://vvvsurvey.org) mapped the IR variability of the Milky Way bulge and southern mid-plane. The VVV eXtended Survey (VVVX) covers the gaps left between the VVV and VHS areas and extend the VVV time-baseline enabling proper motion measurements of -1 in the optically obscured regions where Gaia is limited by extinction. VVVX covers 1700 sq degrees in the Southern sky, from l &lt;=130deg to l = +20deg.
description: This is a dynamic dataset; it is growing as new data is added. The DOI refers to the newest available dataset.
DOI: 10.25318/9810028801-eng
title: Religion by Indigenous identity: Canada, provinces and territories

description: Religion by Indigenous identity, age and gender for the population in private households.
DOI: 10.25919/4vh4-mr48
title: Norfolk Island landcover mapping from airborne LiDAR

description: A landcover classification produced from airborne LiDAR and spaceborne datasets to assist in the mapping and management of woody weeds on Norfolk Island.