cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive130711.20230509.8.1
title: Streptococcus parasuis Nomoto et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130712.20230509.8.1
title: Streptomyces cyslabdanicus Také et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130713.20230509.8.1
title: Streptomyces lactacystinicus Také et al. 2017

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130714.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130715.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130716.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130717.20230509.8.1
title: Streptomyces gilvigriseus Ser et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130718.20230509.8.1
title: Streptomyces baliensis Otoguro et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130719.20230509.8.1
title: Streptomyces halophytocola Qin et al. 2013

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130720.20230509.8.1
title: Streptomyces leeuwenhoekii Busarakam et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130721.20230509.8.1
title: Streptomyces iconiensis Tatar et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130722.20230509.8.1
title: Streptomyces smyrnaeus Tatar et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130723.20230509.8.1
title: Streptomyces lunaelactis Maciejewska et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130724.20230509.8.1
title: Streptomyces seymenliensis Tatar and Sahin 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130725.20230509.8.1
title: Streptomyces klenkii Veyisoglu and Sahin 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130726.20230509.8.1
title: Streptomyces ferrugineus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130727.20230509.8.1
title: Streptomyces vulcanius

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130728.20230509.8.1
title: Streptomyces fractus Rohland and Meyers 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130729.20230509.8.1
title: Streptomyces maoxianensis Guan et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130730.20230509.8.1
title: Streptomyces alkaliphilus Akhwale et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130731.20230509.8.1
title: Microbispora bryophytorum Li et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130732.20230509.8.1
title: Planobispora takensis Ngaemthao et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130733.20230509.8.1
title: Streptosporangium sonchi Ma et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130734.20230509.8.1
title: Streptosporangium kronopolitis Ma et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130735.20230509.8.1
title: Streptosporangium subfuscum Zhou et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive130736.20230509.8.1
title: Sphaerisporangium rufum Mingma et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.kkm2zd
title: Occurrence Download

description: A dataset containing 13238920 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odonata"
 ]
}

 The dataset includes 13238920 records from 7234 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021604-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxxwe9
title: Occurrence Download

description: A dataset containing 169947 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos L.f., Arthurdendyus triangulatus (Dendy, 1895), Cabomba caroliniana A.Gray, Callosciurus finlaysonii (Horsfield, 1823), Cherax destructor Clark, 1936, Corvus splendens Vieillot, 1817, Crassula helmsii (Kirk) Cockayne, Elodea densa (Planch.) Casp., Eriocheir sinensis H.Milne Edwards, 1853, Erythranthe guttata (DC.) G.L.Nesom, Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Faxonius virilis (Hagen, 1870), Gambusia affinis (Baird & Girard, 1853), Heracleum mantegazzianum Sommier & Levier, Heracleum persicum Desf. ex Fisch., C.A.Mey. & Avé-Lall., Heracleum pubescens (Hoffm.) M.Bieb., Houttuynia cordata Thunb., Hydrocotyle ranunculoides L.f., Impatiens glandulifera Royle, Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Lagarosiphon major (Ridl.) Moss, Lepomis gibbosus (Linnaeus, 1758), Limnoperna fortunei (Dunker, 1857), Ludwigia grandiflora (Michx.) Greuter & Burdet, Ludwigia peploides (Kunth) P.H.Raven, Lysichiton americanus Hultén & H.St.John, Morone americana (Gmelin, 1789), Muntiacus reevesi (Ogilby, 1839), Myriophyllum aquaticum (Vell.) Verdc., Myriophyllum heterophyllum Michx., Pacifastacus leniusculus (Dana, 1852), Petasites japonicus (Siebold & Zucc.) Maxim., Pontederia cordata L., Procambarus acutus (Girard, 1852), Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Pseudorasbora parva (Temminck & Schlegel, 1846), Pycnonotus cafer (Linnaeus, 1766), Saururus cernuus L., Sciurus carolinensis Gmelin, 1788, Sciurus niger Linnaeus, 1758, Solenopsis invicta Buren, 1972, Solenopsis richteri Forel, 1909, Threskiornis aethiopicus (Latham, 1790), Vespa velutina Lepeletier, 1836, Zizania latifolia (Griseb.) Hance ex F.Muell.)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 169947 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021920-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m8xegf
title: Occurrence Download

description: A dataset containing 1750 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventario avifaunístico de la sierra de Guerrero (Sierra Madre del Sur)"
 ]
}

 The dataset includes 1750 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021925-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4eq772
title: Occurrence Download

description: A dataset containing 1038148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus (Linnaeus, 1766), Myocastor coypus (Molina, 1782))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1038148 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021919-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11091279
title: Combining different wearable devices to assess gait speed in real-world setting

description: This dataset was created in the context of the EU project Tolife, which aims at validating an artificial intelligence solution to process daily life patient data captured by non-obtrusive sensors to enable personalized treatment, assessment of health outcomes and improved quality of life in chronic obstructive pulonary disease patients.

In this study, we utilized the Tolife sensor platform, comprising a Samsung Galaxy A14 smartphone, a Samsung Galaxy Watch 5, and custom smart shoes. These devices gathered inertial sensor data, including accelerometers, gyroscopes, and pressure sensors, for gait analysis. The smart shoes feature integrated electronics, including inertial measurement units and Bluetooth connectivity, along with pressure sensors in the insole. Reference measurements for gait speed were obtained using the Xsens Awinda inertial motion tracker with MVN Analyze software. Twenty participants underwent a modified Six Minute-Walking-Test (6MWT) at three different paces: slow, medium, and fast, with consistent device placement. The dataset is organized into folders storing wearable device data and reference measurements, with individual .csv files for each sensor and test pace.

The dataset is structured in two folders: the first stores data acquired from the wearable devices, while the second one contains the reference data. Within the folders, the organization follows the structure outlined in the "readme" file. The distances covered by subjects during the tests are stored in the “smwd.csv” file. Here, each rows represent a subject, and the columns the test’s paces: slow, medium and fast. 

When using this dataset, please cite "Zanoletti, M.; Bufano, P.; Bossi, F.; Di Rienzo, F.; Marinai, C.; Rho, G.; Vallati, C.; Carbonaro, N.; Greco, A.; Laurino, M.; et al. Combining Different Wearable Devices to Assess Gait Speed in Real-World Settings. Sensors 2024, 24, 3205. https://doi.org/10.3390/s24103205"
DOI: 10.6084/m9.figshare.24898476
title: Universal scaling in fractional dimension

description: The file data_fig2 can be used to reproduce Fig.2 of the manuscript as it reports the estimate of the spectral dimension as a function of the parameter \rho.

The file data_fig3 can be used to reproduce Fig.3 as it includes the data of the critical exponents nu as a function of the spectral dimension (with their respective errorbars).

Fig.3 can be reproduced using the datases sp13. In the file name the first number indicates the linear size of the system. The second number is the value of rho (multiplied by 100). The first 5 columns of the file report respectively:
1) The value of N.
2) The average end to end distance.
3) The average gyration radius.
4) The average squared end to end distance.
5) The average squared gyration radius.
All the following columns are convergence parameters that can be safely ignored.
DOI: 10.6084/m9.figshare.24898476.v1
title: Universal scaling in fractional dimension

description: The file data_fig2 can be used to reproduce Fig.2 of the manuscript as it reports the estimate of the spectral dimension as a function of the parameter \rho.

The file data_fig3 can be used to reproduce Fig.3 as it includes the data of the critical exponents nu as a function of the spectral dimension (with their respective errorbars).

Fig.3 can be reproduced using the datases sp13. In the file name the first number indicates the linear size of the system. The second number is the value of rho (multiplied by 100). The first 5 columns of the file report respectively:
1) The value of N.
2) The average end to end distance.
3) The average gyration radius.
4) The average squared end to end distance.
5) The average squared gyration radius.
All the following columns are convergence parameters that can be safely ignored.
DOI: 10.6084/m9.figshare.25668852.v1
title: Active droplets through enzyme-free, dynamic phosphorylation

description: Data to support the main findings
DOI: 10.5281/zenodo.11212803
title: Computational Data for "Synthesis of (1-silyl)allylboronates by KOtBu-catalyzed ring-opening gem-silylborylation of cyclopropenes"

description: Computational data used for the article "Synthesis of (1-silyl)allylboronates by KOtBu-catalyzed ring-opening gem-silylborylation of cyclopropenes". This Includes the computational output files of geometries, optimizations, and frequency calculations of all mentioned structures.
DOI: 10.5281/zenodo.11212804
title: Computational Data for "Synthesis of (1-silyl)allylboronates by KOtBu-catalyzed ring-opening gem-silylborylation of cyclopropenes"

description: Computational data used for the article "Synthesis of (1-silyl)allylboronates by KOtBu-catalyzed ring-opening gem-silylborylation of cyclopropenes". This Includes the computational output files of geometries, optimizations, and frequency calculations of all mentioned structures.
DOI: 10.15468/dl.38xbka
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "DatasetKey is one of (Xeno-canto - Bird sounds from around the world, iNaturalist Research-grade Observations, EOD – eBird Observation Dataset, Aves de los Parques Ecológicos Distritales Humedales Bogotá, D.C.)",
 "Geometry POLYGON((-74.07734 4.69816,-74.07194 4.69816,-74.06449 4.69816,-74.06449 4.7059,-74.07734 4.7059,-74.07734 4.69816))",
 "Month is one of (January, December)",
 "Year 2015-2015"
 ]
}

 The dataset includes 76 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021926-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25853458
title: Supplementary Material for: Prognostic value and clinical significance of vesicular transport-related genes in clear cell renal cell carcinoma

description: Vesicular transport (VT) has a complex relationship with tumor progression and immunity. But prognostic significance of VT in clear cell renal cell carcinoma (ccRCC) is unclear. Thus, we aimed to establish a prognostic model according to VT to predict overall survival of ccRCC patients. We used patient data from TCGA database and built a prognostic model with 13 VT-related genes (VTRGs) by differential expression analysis, LASSO regression, and univariate/multivariate Cox analysis. The model was validated internally and externally, and survival analysis and ROC curves depicted excellent predictive ability. Furthermore, higher modeled risk scores corresponded to more advanced tumor progression. To further understand the potential reasons for different prognoses in patients, we did enrichment analysis on differentially expressed genes identified by the model in risk groups. Humoral immune response and cAMP signaling pathway may be the biological processes and pathways leading to poor prognosis. Further analysis of immune microenvironment presented that ccRCC patients with poor prognoses had highly immune-infiltrated characteristics. We compared the drug response data of samples from different prognostic patients in the GDSC database and identified drug sensitivity differences associated with prognosis. Finally, we demonstrated that SAA1 and KIF18B could increase the proliferation, migration and invasion ability of ccRCC cells using cellular experiments. In summary, we further revealed the importance of VTRGs in ccRCC prognosis.
DOI: 10.6084/m9.figshare.25853458.v1
title: Supplementary Material for: Prognostic value and clinical significance of vesicular transport-related genes in clear cell renal cell carcinoma

description: Vesicular transport (VT) has a complex relationship with tumor progression and immunity. But prognostic significance of VT in clear cell renal cell carcinoma (ccRCC) is unclear. Thus, we aimed to establish a prognostic model according to VT to predict overall survival of ccRCC patients. We used patient data from TCGA database and built a prognostic model with 13 VT-related genes (VTRGs) by differential expression analysis, LASSO regression, and univariate/multivariate Cox analysis. The model was validated internally and externally, and survival analysis and ROC curves depicted excellent predictive ability. Furthermore, higher modeled risk scores corresponded to more advanced tumor progression. To further understand the potential reasons for different prognoses in patients, we did enrichment analysis on differentially expressed genes identified by the model in risk groups. Humoral immune response and cAMP signaling pathway may be the biological processes and pathways leading to poor prognosis. Further analysis of immune microenvironment presented that ccRCC patients with poor prognoses had highly immune-infiltrated characteristics. We compared the drug response data of samples from different prognostic patients in the GDSC database and identified drug sensitivity differences associated with prognosis. Finally, we demonstrated that SAA1 and KIF18B could increase the proliferation, migration and invasion ability of ccRCC cells using cellular experiments. In summary, we further revealed the importance of VTRGs in ccRCC prognosis.
DOI: 10.15468/dl.r5w7kg
title: Occurrence Download

description: A dataset containing 122293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.63625 -15.58354,-74.2283 -16.25878,-73.21223 -16.45141,-74.44623 -12.98417,-76.85155 -12.92988,-76.31149 -14.85083,-75.63625 -15.58354))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 122293 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021927-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10210102
title: Temperature change elicits lipidome adaptation in the simple organisms Mycoplasma mycoides and JCVI-syn3B

description: Cell membranes mediate interactions between life and its environment, with lipids determining their properties. Understanding how cells adjust their lipidomes to tune membrane properties is crucial yet poorly defined due to the complexity of most organisms. We used quantitative shotgun lipidomics to study temperature adaptation in the simple organism Mycoplasma mycoides and the minimal cell, JCVI-syn3B. We show that lipid abundances follow a universal logarithmic distribution across eukaryotes and bacteria, with comparable degrees of lipid remodeling for adaptation regardless of lipidomic or organismal complexity. Lipid features analysis demonstrates head group-specific acyl chain remodeling as characteristic of lipidome adaptation; its deficiency in Syn3B is associated with impaired homeoviscous adaptation. Temporal analysis reveals a two-stage cold adaptation process: swift cholesterol and cardiolipin shifts followed by gradual acyl chain modifications. This work provides an in-depth analysis of lipidome adaptation in minimal cells, laying a foundation to probe the design principles of living membranes.

 
description: bioRxiv preprint is available here: https://www.biorxiv.org/content/10.1101/2023.11.10.566608v3.full
DOI: 10.5281/zenodo.11212798
title: Temperature change elicits lipidome adaptation in the simple organisms Mycoplasma mycoides and JCVI-syn3B

description: Cell membranes mediate interactions between life and its environment, with lipids determining their properties. Understanding how cells adjust their lipidomes to tune membrane properties is crucial yet poorly defined due to the complexity of most organisms. We used quantitative shotgun lipidomics to study temperature adaptation in the simple organism Mycoplasma mycoides and the minimal cell, JCVI-syn3B. We show that lipid abundances follow a universal logarithmic distribution across eukaryotes and bacteria, with comparable degrees of lipid remodeling for adaptation regardless of lipidomic or organismal complexity. Lipid features analysis demonstrates head group-specific acyl chain remodeling as characteristic of lipidome adaptation; its deficiency in Syn3B is associated with impaired homeoviscous adaptation. Temporal analysis reveals a two-stage cold adaptation process: swift cholesterol and cardiolipin shifts followed by gradual acyl chain modifications. This work provides an in-depth analysis of lipidome adaptation in minimal cells, laying a foundation to probe the design principles of living membranes.

 
description: bioRxiv preprint is available here: https://www.biorxiv.org/content/10.1101/2023.11.10.566608v3.full
DOI: 10.34740/kaggle/dsv/8453808
title: Maize-corn
DOI: 10.15468/dl.aq8r9t
title: Occurrence Download

description: A dataset containing 250649 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ulex europaeus L."
 ]
}

 The dataset includes 250649 records from 1745 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021929-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6eff6
title: Occurrence Download

description: A dataset containing 1336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Cardamine dentata Schult."
 ]
}

 The dataset includes 1336 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087028-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.