cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1346134
title: GeneSeqToFamily: Data

description: Gene duplication is a major factor contributing to evolutionary novelty, and the contraction or expansion of gene families has often been associated with morphological, physiological and environmental adaptations. The study of homologous genes helps us to understand the evolution of gene families. It plays a vital role in finding ancestral gene duplication events as well as identifying genes that have diverged from a common ancestor under positive selection. There are various tools available, such as MSOAR, OrthoMCL and HomoloGene, to identify gene families and visualise syntenic information between species, providing an overview of syntenic regions evolution at the family level. Unfortunately, none of them provide information about structural changes within genes, such as the conservation of ancestral exon boundaries amongst multiple genomes. The Ensembl GeneTrees computational pipeline generates gene trees based on coding sequences and provides details about exon conservation, and is used in the Ensembl Compara project to discover gene families.
DOI: 10.5281/zenodo.1256761
title: GeneSeqToFamily: Gene JSON

description: Gene duplication is a major factor contributing to evolutionary novelty, and the contraction or expansion of gene families has often been associated with morphological, physiological and environmental adaptations. The study of homologous genes helps us to understand the evolution of gene families. It plays a vital role in finding ancestral gene duplication events as well as identifying genes that have diverged from a common ancestor under positive selection. There are various tools available, such as MSOAR, OrthoMCL and HomoloGene, to identify gene families and visualise syntenic information between species, providing an overview of syntenic regions evolution at the family level. Unfortunately, none of them provide information about structural changes within genes, such as the conservation of ancestral exon boundaries amongst multiple genomes. The Ensembl GeneTrees computational pipeline generates gene trees based on coding sequences and provides details about exon conservation, and is used in the Ensembl Compara project to discover gene families.
DOI: 10.5281/zenodo.6796362
title: Aphrodites_daily_mean_temperature_monsoon_Asia

description: The dataset contains the average temperature over monsoon Asia.
DOI: 10.5281/zenodo.6796361
title: Aphrodites_daily_mean_temperature_monsoon_Asia

description: The dataset contains the average temperature over monsoon Asia.
DOI: 10.5281/zenodo.6600820
title: ECMWF Reanalysis

description: The dataset consist of air_temperature at 2 metres for the month of May 2022. The dataset is of the type netCDF.
DOI: 10.5281/zenodo.6621460
title: Air_Temperature_at_2_metres.nc

description: The dataset represents the air temperature at 2 meters from 1st May 2022 [00:00:00 UTC] to 25th May 2022[18:00:00 UTC].
DOI: 10.5281/zenodo.6621459
title: Air_Temperature_at_2_metres.nc

description: The dataset represents the air temperature at 2 meters from 1st May 2022 [00:00:00 UTC] to 25th May 2022[18:00:00 UTC].
DOI: 10.5281/zenodo.6600819
title: ECMWF Reanalysis

description: The dataset consist of air_temperature at 2 metres for the month of May 2022. The dataset is of the type netCDF.
DOI: 10.5281/zenodo.6961893
title: BCdatabaser - trnl.viridiplantae.none.2022-08-04.zip

description: Parameters: --marker-search-string trnL --taxonomic-range Viridiplantae --sequence-length-filter 100:2000 --sequences-per-taxon 9
description: This dataset was automatically created with data from NCBI using the BCdatabaser tool
description: {"references": ["Keller et al. (2019) BCdatabaser: on-the-fly reference database creation for (meta-)barcoding. EcoEvoRxiv (2019); https://doi.org/10.32942/osf.io/cmfu2 - https://github.com/molbiodiv/bcdatabaser", "eutils: Sayers E. E-utilities Quick Start. 2008 Dec 12 [Updated 2018 Oct 24]. In: Entrez Programming Utilities Help [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2010-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK25500/", "NCBI::Taxonomy: F\u00f6rster et al. https://github.com/greatfireball/NCBI-Taxonomy - F\u00f6rster F. greatfireball/NCBI-Taxonomy v0.90. Zenodo. 2018 Oct 15; https://doi.org/10.5281/zenodo.1462861", "SeqFilter: Hackl et al. https://github.com/BioInf-Wuerzburg/SeqFilter", "dispr: Cofield et al. https://github.com/douglasgscofield/dispr", "Krona: Ondov BD, Bergman NH, and Phillippy AM. Interactive metagenomic visualization in a Web browser. BMC Bioinformatics. 2011 Sep 30; 12(1):385."]}
DOI: 10.5281/zenodo.6961892
title: BCdatabaser - trnl.viridiplantae.none.2022-08-04.zip

description: Parameters: --marker-search-string trnL --taxonomic-range Viridiplantae --sequence-length-filter 100:2000 --sequences-per-taxon 9
description: This dataset was automatically created with data from NCBI using the BCdatabaser tool
description: {"references": ["Keller et al. (2019) BCdatabaser: on-the-fly reference database creation for (meta-)barcoding. EcoEvoRxiv (2019); https://doi.org/10.32942/osf.io/cmfu2 - https://github.com/molbiodiv/bcdatabaser", "eutils: Sayers E. E-utilities Quick Start. 2008 Dec 12 [Updated 2018 Oct 24]. In: Entrez Programming Utilities Help [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2010-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK25500/", "NCBI::Taxonomy: F\u00f6rster et al. https://github.com/greatfireball/NCBI-Taxonomy - F\u00f6rster F. greatfireball/NCBI-Taxonomy v0.90. Zenodo. 2018 Oct 15; https://doi.org/10.5281/zenodo.1462861", "SeqFilter: Hackl et al. https://github.com/BioInf-Wuerzburg/SeqFilter", "dispr: Cofield et al. https://github.com/douglasgscofield/dispr", "Krona: Ondov BD, Bergman NH, and Phillippy AM. Interactive metagenomic visualization in a Web browser. BMC Bioinformatics. 2011 Sep 30; 12(1):385."]}
DOI: 10.5281/zenodo.6926604
title: The Tracing Convective Momentum Transport in Complex Cloudy Atmospheres Experiment - Level 2

description: The first field campaign from the Tracing Convective Momentum Transport in Complex Cloudy Atmospheres experiment project (CMTRACE) took place in Cabauw, the Netherlands, between September 13th and October 3rd 2021. During this field campaign, two cloud radars and one wind lidar were operated with a similar scanning strategy for deriving wind speed and direction profiles from near the surface up to cloud tops. Here we provide the daily Level 2 data from the campaign. At this level, several processing steps were applied to the Level 1 data from each instrument to minimize the differences between the sampled volumes resampled and temporal and spatial resolution to generate merged profiles of wind speed and direction. The raw dataset is available for the users on request from the corresponding author.
DOI: 10.5281/zenodo.6926482
title: The Tracing Convective Momentum Transport in Complex Cloudy Atmospheres Experiment - Level 1

description: The first field campaign from the Tracing Convective Momentum Transport in Complex Cloudy Atmospheres experiment project (CMTRACE) took place in Cabauw, the Netherlands, between September 13th and October 3rd 2021. During this field campaign, two cloud radars and one wind lidar were operated with a similar scanning strategy for deriving wind speed and direction profiles from near the surface up to cloud tops. Here we provide the daily Level 1 data from each instrument. At this level, several processing steps were applied to the raw data to minimize offsets, reduce the number of spurious data and derive wind speed and direction profiles; however, the data from each instrument is kept on its original spatial and temporal resolution. The raw data is available for the users on request from the corresponding author. <strong>Prefix identificaiton:</strong> Lidar data: cmtrace_cabauw_wls200-218<br> Scanning radar data: cmtrace_cabauw_rpg_radar_35-94<br> Vertically pointing radar data: cmtrace_cabauw_rpg_radar_94
DOI: 10.5281/zenodo.6961419
title: Dataset for the structural investigation of hybrid SLS joints

description: The dataset contains raw data of structural tests performed on<br> pinned hybrid titanium-composite joints. Geometry is similar to ASTM D5868. For further context, the creators refer to the research conducted<br> at the Institute of Structural Lightweight Design,<br> Johannes Kepler University, Linz, Austria. This research was conducted within the SUSTAINair project.<br> This project has received funding from the European Union’s Horizon 2020<br> research and innovation program under grant agreement No. 101006952.
DOI: 10.5281/zenodo.6961418
title: Dataset for the structural investigation of hybrid SLS joints

description: The dataset contains raw data of structural tests performed on<br> pinned hybrid titanium-composite joints. Geometry is similar to ASTM D5868. For further context, the creators refer to the research conducted<br> at the Institute of Structural Lightweight Design,<br> Johannes Kepler University, Linz, Austria. This research was conducted within the SUSTAINair project.<br> This project has received funding from the European Union’s Horizon 2020<br> research and innovation program under grant agreement No. 101006952.
DOI: 10.25928/2vx3-4y36
title: Hubschrauber-Elektromagnetik (HEM) Gebiet 109 Hadelner Marsch
title: Helicopter-borne Electromagnetics (HEM) Area 109 Hadelner Marsch

description: Zipped maps and sections
DOI: 10.25928/3q5g-3j45
title: Rohdaten der Hubschrauber-Elektromagnetik (HEM) Gebiet 175 Schleiz
title: Raw Data on Helicopter-borne electromagnetics (HEM) Area 175 Schleiz

description: Report
DOI: 10.25928/4jgb-a636
title: Hubschrauber-Magnetik (HMG) Gebiet 175 Schleiz 
title: Helicopter-borne magnetics (HMG) Area 175 Schleiz

description: Zipped maps
DOI: 10.14469/hpc/10760
title: bis methylene atrop, saddle=2 OH isomer, G = -918.560969

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10762
title: bis methylene atrop, saddle=2 OH, G = -918.563390 IRC

description: Gassian 16 calculation
DOI: 10.14469/hpc/10784
title: dibromo-bis(dimethylmethylene) atropisomerism in polysiphenol, TS, G = -6140.547035

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10786
title: dibromo-bis(dimethylmethylene) atropisomerism in polysiphenol, GS, G = -6140.55923

description: Gaussian 16 (C01) calculation
DOI: 10.5281/zenodo.6961763
title: Reciprocal space reconstruction of X-ray crystallographic data of second extracellular domain of human tetraspanin CD9

description: X-ray diffraction data of a crystal of CD9<sub>EC2</sub> are published on Zenodo with DOI: 10.5281/zenodo.5886687. From these data a reciprocal space reconstruction was generated with IMG2HKL as part of the EVAL software suite (http://www.crystal.chem.uu.nl/distr/eval/). It is written in ccp4 map format (https://www.ccp4.ac.uk/) and can be viewed with e.g. UCSF Chimera (https://www.cgl.ucsf.edu/chimera/). Details are described in IUCrData Raw Data Letters, Neviani et al. (2022).
DOI: 10.5281/zenodo.6961762
title: Reciprocal space reconstruction of X-ray crystallographic data of second extracellular domain of human tetraspanin CD9

description: X-ray diffraction data of a crystal of CD9<sub>EC2</sub> are published on Zenodo with DOI: 10.5281/zenodo.5886687. From these data a reciprocal space reconstruction was generated with IMG2HKL as part of the EVAL software suite (http://www.crystal.chem.uu.nl/distr/eval/). It is written in ccp4 map format (https://www.ccp4.ac.uk/) and can be viewed with e.g. UCSF Chimera (https://www.cgl.ucsf.edu/chimera/). Details are described in IUCrData Raw Data Letters, Neviani et al. (2022).
DOI: 10.21227/0vs9-pg60
title: Search programm of journal paper

description: the zip file ''matlabcodeforallfigures'' contains the Matlab code for all figures and one table.  Within which, the data for Figure 5, Figure 7 as well as Figure 9 are generated by the C ++ script in the zip file ''CsciptforFigure57and9'' and its correlated data collected in the zip file ''collecteddataforFigure57and9''.
DOI: 10.5281/zenodo.6961986
title: DISTANT-CTO: A Zero Cost, Distantly Supervised Approach to Improve Low-Resource Entity Extraction Using Clinical Trials Literature

description: <strong>Datasets</strong> DISTANT-CTO is a weakly-labelled dataset of 'Intervention' and 'Comparator' entity annotated sentences. The dataset was obtained using candidate generation the approach described in "DISTANT-CTO: A Zero Cost, Distantly Supervised Approach to Improve Low Resource Entity Extraction Using Clinical Trials Literature". distantcto_high_conf.txt - ds conf 1.0 (full dataset) extraction1_pos_posnegtrail_conf09.txt - ds conf 0.9 (partial dataset) The physio test set is a dataset comprising 153 PICO annotated randomized controlled trial abstracts from Physiotherapy and Rehabilitation. This dataset was used as an additional benchmark to evaluate the generalization power of the weakly annotated dataset and NER model for this sub-domain. <strong>Utility</strong> The dataset could be used as an input for training 'Intervention' named-entity recognition (NER) models. <strong>Availability</strong> This directory includes extraction1_pos_posnegtrail_conf09.txt - This text data file contains all the weak annotations (source intervention terms mapped onto target sentences) from clinicaltrials.org (CTO) with a confidence score of 0.9 and above. The directory also includes ‘physio_sent_annot2POS_posnegtrail.txt’ – This data file contains manually annotated (Intervention entity) data from the physiotherapy and rehabilitation domain. It follows a roughly similar structure as described in the ‘Description for long targets’ section. (‘Participant’ and ‘Outcome’ annotations are removed from this file)
DOI: 10.5281/zenodo.6497283
title: DISTANT-CTO: A Zero Cost, Distantly Supervised Approach to Improve Low-Resource Entity Extraction Using Clinical Trials Literature

description: <strong>Datasets</strong> DISTANT-CTO is a weakly-labelled dataset of 'Intervention' and 'Comparator' entity annotated sentences. The dataset was obtained using candidate generation the approach described in "DISTANT-CTO: A Zero Cost, Distantly Supervised Approach to Improve Low Resource Entity Extraction Using Clinical Trials Literature". distantcto_high_conf.txt - ds conf 1.0 (full dataset) extraction1_pos_posnegtrail_conf09.txt - ds conf 0.9 (partial dataset) The physio test set is a dataset comprising 153 PICO annotated randomized controlled trial abstracts from Physiotherapy and Rehabilitation. This dataset was used as an additional benchmark to evaluate the generalization power of the weakly annotated dataset and NER model for this sub-domain. <strong>Utility</strong> The dataset could be used as an input for training 'Intervention' named-entity recognition (NER) models. <strong>Availability</strong> This directory includes extraction1_pos_posnegtrail_conf09.txt - This text data file contains all the weak annotations (source intervention terms mapped onto target sentences) from clinicaltrials.org (CTO) with a confidence score of 0.9 and above. The directory also includes ‘physio_sent_annot2POS_posnegtrail.txt’ – This data file contains manually annotated (Intervention entity) data from the physiotherapy and rehabilitation domain. It follows a roughly similar structure as described in the ‘Description for long targets’ section. (‘Participant’ and ‘Outcome’ annotations are removed from this file)
DOI: 10.5517/ccdc.csd.cc2c09zp
title: CCDC 2175052: Experimental Crystal Structure Determination

description: Related Article: Saba Mehreen, Mehwash Zia, Ajmal Khan, Javid Hussain, Saeed Ullah, Muhammad U. Anwar, Ahmed Al-Harrasi, Muhammad Moazzam Naseer|2022|RSC Advances|12|20919|doi:10.1039/D2RA03307K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c0b0r
title: CCDC 2175053: Experimental Crystal Structure Determination

description: Related Article: Saba Mehreen, Mehwash Zia, Ajmal Khan, Javid Hussain, Saeed Ullah, Muhammad U. Anwar, Ahmed Al-Harrasi, Muhammad Moazzam Naseer|2022|RSC Advances|12|20919|doi:10.1039/D2RA03307K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bmgp4
title: CCDC 2163666: Experimental Crystal Structure Determination

description: Related Article: Yang Li, Katrin Pelzer, Damien Sechet, Geordie Creste, Dominique Matt, Pierre Braunstein, Dominique Armspach|2022|Dalton Trans.|51|11226|doi:10.1039/D2DT01553F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.14279/depositonce-4957
title: Force-distance-dependencies for the adhesive contact of cylinders

description: We investigated numerically the detachment behavior of some flat, but oddly shaped cylindrical contact in the frame of JKR adhesion. For each sample, we find detachment regions and resulting adhesive force as a function of the separation distance. Related article: Pohrt, R., & Popov, V. (2015). ADHESIVE CONTACT SIMULATION OF ELASTIC SOLIDS USING LOCAL MESH-DEPENDENT DETACHMENT CRITERION IN BOUNDARY ELEMENTS METHOD. Facta Universitatis, Series: Mechanical Engineering, 13(1), 3-10. Retrieved from http://casopisi.junis.ni.ac.rs/index.php/FUMechEng/article/view/764
DOI: 10.25928/89ee-qe05
title: Hubschrauber-Elektromagnetik (HEM) Gebiet 175 Schleiz
title: Helicopter-borne electromagnetics (HEM) Area 175 Schleiz

description: Zipped maps and sections
DOI: 10.5517/ccdc.csd.cc23q7gk
title: CCDC 1957788: Experimental Crystal Structure Determination

description: Related Article: Fenzhen Chang|2019|CSD Communication|||
description: Related Article: Yi Li, Shuang Xin, Rui Weng, Xiaohua Liu, Xiaoming Feng|2022|Chemical Science|13|8871|doi:10.1039/D2SC02541H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2854tf
title: CCDC 2090324: Experimental Crystal Structure Determination

description: Related Article: Delphine Pichon-Barré, Ziyun Zhang, Aël Cador, Thomas Vives, Thierry Roisnel, Olivier Baslé, Lucie Jarrige, Luigi Cavallo, Laura Falivene, Marc Mauduit|2022|Chemical Science|13|8773|doi:10.1039/D2SC02908A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2854vg
title: CCDC 2090325: Experimental Crystal Structure Determination

description: Related Article: Delphine Pichon-Barré, Ziyun Zhang, Aël Cador, Thomas Vives, Thierry Roisnel, Olivier Baslé, Lucie Jarrige, Luigi Cavallo, Laura Falivene, Marc Mauduit|2022|Chemical Science|13|8773|doi:10.1039/D2SC02908A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2854wh
title: CCDC 2090326: Experimental Crystal Structure Determination

description: Related Article: Delphine Pichon-Barré, Ziyun Zhang, Aël Cador, Thomas Vives, Thierry Roisnel, Olivier Baslé, Lucie Jarrige, Luigi Cavallo, Laura Falivene, Marc Mauduit|2022|Chemical Science|13|8773|doi:10.1039/D2SC02908A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29cx1n
title: CCDC 2126601: Experimental Crystal Structure Determination

description: Related Article: Yanyu Wu, Gregory D. Sutton, Michael D. S. Halamicek, Xinxin Xing, Jiming Bao, Thomas S. Teets|2022|Chemical Science|13|8804|doi:10.1039/D2SC02909J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29cx2p
title: CCDC 2126602: Experimental Crystal Structure Determination

description: Related Article: Yanyu Wu, Gregory D. Sutton, Michael D. S. Halamicek, Xinxin Xing, Jiming Bao, Thomas S. Teets|2022|Chemical Science|13|8804|doi:10.1039/D2SC02909J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29lyxs
title: CCDC 2133386: Experimental Crystal Structure Determination

description: Related Article: Wei He, Shohei Tashiro, Mitsuhiko Shionoya|2022|Chemical Science|13|8752|doi:10.1039/D2SC01561G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29lyzv
title: CCDC 2133388: Experimental Crystal Structure Determination

description: Related Article: Wei He, Shohei Tashiro, Mitsuhiko Shionoya|2022|Chemical Science|13|8752|doi:10.1039/D2SC01561G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.