cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0158768.10fu
title: SH0158768.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0158769.10fu
title: SH0158769.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0158770.10fu
title: SH0158770.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0158771.10fu
title: SH0158771.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0158772.10fu
title: SH0158772.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0158773.10fu
title: SH0158773.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.vpgcbq
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhopalus lepidus Fieber, 1861"
 ]
}

 The dataset includes 74 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014516-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jhurro
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014002-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hmygnh
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010685-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.larfva
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012097-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dq3c7h
title: Occurrence Download

description: A dataset containing 29863221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "Year 2006-2006"
 ]
}

 The dataset includes 29863221 records from 5927 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228691-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmvqn6
title: Occurrence Download

description: A dataset containing 80229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "License is CC-BY 4.0",
 "TaxonKey is Formicidae"
 ]
}

 The dataset includes 80229 records from 622 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016158-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/kgxgmj
title: Quantum Mapping Topology Algorithm (QMT) and Extraterrestrial Energy State Conversion Instrument: A Synergistic Technical System for Multi-Domain Consciousness-Energy-Form Transformation

description: This technical system integrates two core components—the Quantum Mapping Topology Algorithm (QMT) and the Extraterrestrial Energy State Conversion Instrument—to form a synergistic framework that supports end-to-end transformation from consciousness encoding to interstellar energy-state adaptation.
 
The QMT, as the complete professional algorithm embedded in the Extraterrestrial Energy State Conversion Instrument, addresses long-standing pain points in cross-scale simulation (scale fragmentation, information dissipation, and lack of trustworthiness) through innovations in architecture, methodology, and engineering. It establishes a unified evolutionary computing infrastructure for the quantum-material-information tri-domain, enabling lossless cross-scale information transmission, hardware-agnostic high-precision operation (supporting pure Python degraded mode), and full-link trusted control (integrating SHA-256 hash chains and causal consistency checks).
 
Complementing the QMT, the Extraterrestrial Energy State Conversion Instrument provides the hardware carrier and functional extension for this algorithmic framework. It realizes key technical goals such as interstellar spacetime folding (1-second two-way folding for 2–3 light-years within a single universe), immortal plasma life-state transformation (encoding humans into plasma and reorganizing information into tangible entities), and self-sustaining energy circulation (SCES with ≥95% efficiency via zero-point energy and dark energy capture). The instrument integrates subsystems including consciousness quantum topology mapping, zero-state energy coupling, fractal-anchored field folding, 3D metamaterial voxel arrays, and small-scale quantum photon memory, forming a closed loop from "consciousness input → energy conversion → form manifestation → interstellar adaptation → safe rollback."
 
Together, the QMT and the Extraterrestrial Energy State Conversion Instrument mutually reinforce each other: the algorithm provides the core computing logic for multi-domain synergy and precision control, while the instrument materializes the algorithm’s capabilities into actionable hardware functions. This synergy enables the system to break through the limitations of traditional single-dimensional technologies, supporting cutting-edge scenarios such as private consciousness-energy transformation, interstellar navigation, and small-team quantum communication within a single universe, and laying a technical foundation for exploring the infinite possibilities of cosmic civilization.
DOI: 10.5281/zenodo.18503858
title: Seismic cycle simulations and results for manuscript:  A rate-and-state friction based criterion for the probability of earthquake fault jumps
DOI: 10.5281/zenodo.15025385
title: Seismic cycle simulations and results for manuscript:  A rate-and-state friction based criterion for the probability of earthquake fault jumps
DOI: 10.25345/c5ww77d2f
title: MassIVE MSV000100741 - A metabolomics strategy integrating design of experiments to guide microbial metabolite production
title: This dataset contains untargeted LC-MS/MS profiles of Streptomyces cacaoi extracts obtained from fermentation broths produced under different fermentation conditions defined using response surface methodology with a Box-Behnken design. The dataset comprises .raw files, open-format .mzML files, and associated sample metadata, including the culture conditions defined by the design matrix.
DOI: 10.5281/zenodo.18458825
title: The Memorial to the Holocaust of Roma and Sinti in Bohemia: an exhibition and outdoor area.

description: The dataset documents the first year of operation of The Holocaust Memorial to the Holocaust of Roma and Sinti in Bohemia, opened in Lety in the Czech Republic in 2024. It focuses on photographic documentation of the exhibition and the outdoor area. In addition, it also includes documentation of visitor reactions on the Google Maps and Mapy.com platforms.

The documentation of the exhibition consists of photographs and a list of audiovisual stations. The depictions of the outdoor area focus on the architecture, environment and infrastructure on the site.  The visitor´s comments are in the original language, which is predominantly Czech. The reflections are ordered chronologically.

The dataset is an output of a project The Land Gone Wild: Archaeological and Transdisciplinary Research on Resilience Strategies in the 20th Century reg. č. CZ.02.01.01/00/23_025/0008705
DOI: 10.5281/zenodo.18458824
title: The Memorial to the Holocaust of Roma and Sinti in Bohemia: an exhibition and outdoor area.

description: The dataset documents the first year of operation of The Holocaust Memorial to the Holocaust of Roma and Sinti in Bohemia, opened in Lety in the Czech Republic in 2024. It focuses on photographic documentation of the exhibition and the outdoor area. In addition, it also includes documentation of visitor reactions on the Google Maps and Mapy.com platforms.

The documentation of the exhibition consists of photographs and a list of audiovisual stations. The depictions of the outdoor area focus on the architecture, environment and infrastructure on the site.  The visitor´s comments are in the original language, which is predominantly Czech. The reflections are ordered chronologically.

The dataset is an output of a project The Land Gone Wild: Archaeological and Transdisciplinary Research on Resilience Strategies in the 20th Century reg. č. CZ.02.01.01/00/23_025/0008705
DOI: 10.15468/dl.b9wuhq
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Masoala kona",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 33 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016218-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31279447
title: Supplementary Table 12. Functional annotation of the T. amphioxeia and T. acutanuclear gene sets

description: This comprehensive table provides functional annotations for the nuclear gene sets of both Teleaulax species, including UniProt accessions, Gene Ontology (GO) terms, KEGG pathway assignments, and homology information.
DOI: 10.6084/m9.figshare.31279447.v1
title: Supplementary Table 12. Functional annotation of the T. amphioxeia and T. acutanuclear gene sets

description: This comprehensive table provides functional annotations for the nuclear gene sets of both Teleaulax species, including UniProt accessions, Gene Ontology (GO) terms, KEGG pathway assignments, and homology information.
DOI: 10.25345/c5s46hk80
title: MassIVE MSV000100742 - immun infiltration in chordomas and distinct metabolic profiles
title: Spatial metabolomics and lipidomics of 16 samples from 13 chordoma patients. Whole slides were profiled at a 20-micron spatial resolution.
DOI: 10.15468/dl.bu9cks
title: Occurrence Download

description: A dataset containing 492 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mauritia flexuosa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 492 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016221-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18504500
title: BIOPREPARATLAR VA TOMCHILATIB SUG'ORISH USULINING QIZIL LOVIYA O'SIMLIGI XOSILDORLIGIGA, SUVNI TEJASHGA VA TUPROQ NAMLIGIGA TA'SIRI

description: Ushbu maqolada  FOSTIM-3 va SERHOSIL biopreparatlarni qizil loviya(P.vulgaris) o’simligida qo’llash orqali ushbu ekinning hosilini oshirish va sug’orish suvini qanday iqtisod qilinishi haqida ma’lumotlar keltirilgan.
DOI: 10.5281/zenodo.18504501
title: BIOPREPARATLAR VA TOMCHILATIB SUG'ORISH USULINING QIZIL LOVIYA O'SIMLIGI XOSILDORLIGIGA, SUVNI TEJASHGA VA TUPROQ NAMLIGIGA TA'SIRI

description: Ushbu maqolada  FOSTIM-3 va SERHOSIL biopreparatlarni qizil loviya(P.vulgaris) o’simligida qo’llash orqali ushbu ekinning hosilini oshirish va sug’orish suvini qanday iqtisod qilinishi haqida ma’lumotlar keltirilgan.
DOI: 10.15468/dl.d9wj9r
title: Occurrence Download

description: A dataset containing 680 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hasora taminatus"
 ]
}

 The dataset includes 680 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016222-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18504259
title: Dataset for: HERA: A Hybrid Euler Reservoir Architecture for Multivariate Time Series Classification

description: This repository contains the multivariate time series datasets used in the manuscript titled "HERA: A Hybrid Euler Reservoir Architecture for Multivariate Time Series Classification". These datasets are provided to ensure reproducibility of the results presented in the study.
DOI: 10.5281/zenodo.18504260
title: Dataset for: HERA: A Hybrid Euler Reservoir Architecture for Multivariate Time Series Classification

description: This repository contains the multivariate time series datasets used in the manuscript titled "HERA: A Hybrid Euler Reservoir Architecture for Multivariate Time Series Classification". These datasets are provided to ensure reproducibility of the results presented in the study.
DOI: 10.5281/zenodo.18430195
title: Raster Map of Forest Fuels

description: The map of forest fuels is one of the cartographic outputs of the Continuous Forest Inventory of Galicia, Spain. It can be viewed on the portal (https://invega.xunta.gal/invega/visor-gis). This map provides complete, detailed, and transparent information on forest fuels in a pilot area. The dataset is available as a 10 m raster layer. Every pixel shows the predominant Rothermel fuel among the 8 fuels in the study area. More info (https://doi.org/10.1186/s42408-023-00218-y ).
DOI: 10.5281/zenodo.18430196
title: Raster Map of Forest Fuels

description: The map of forest fuels is one of the cartographic outputs of the Continuous Forest Inventory of Galicia, Spain. It can be viewed on the portal (https://invega.xunta.gal/invega/visor-gis). This map provides complete, detailed, and transparent information on forest fuels in a pilot area. The dataset is available as a 10 m raster layer. Every pixel shows the predominant Rothermel fuel among the 8 fuels in the study area. More info (https://doi.org/10.1186/s42408-023-00218-y ).
DOI: 10.15468/dl.6twh6h
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rachana jalindra"
 ]
}

 The dataset includes 172 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016223-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7924238
title: Neutrophil and emergency granulopoietic drivers of sepsis immune suppression and an extreme response to infection

description: The dysregulated host response to infection leading to organ dysfunction is highly heterogeneous. It is currently poorly delineated by sepsis as a clinical syndromic classification, thus confounding immunotherapy trials. Here we establish the pathophysiology and potential therapeutic targets of a specific extreme response to infection state (sepsis response signature SRS1), characterised by immune compromise and poor outcome. We first derive a whole blood single-cell multi-omic atlas of the sepsis response (2727,993 cells, n=39), finding an increase in IL1R2+ immature neutrophils in SRS1, which we confirmed by CyTOF and RNA-sequencing (n=53). We next uncovered high activity of neutrophil STAT3 gene expression programs in SRS1, which were shared across multiple infectioius disease settings (n=1044) irrespective of the clinical definition of the patient cohorts. We observed elevated plasma G-CSF and IL-6 in SRS1, suggesting heightened emergency granulopoiesis (EG). We therefore characterised patient and healthy control hematopoietic stem cells (HSCs) using single-cell RNA/chromatin accessibility multi-omics (29,366 cells, n=27), identifying SRS1-specific EG transcriptional skewing, together with STAT3 and EG master regulator CEBPB epigenetic signatures. Our findings establish a common cellular axis present across extreme responses to infection, reveal its hematopoietic origin, and nominate G-CSF and IL-6 as potential therapeutic targets for the SRS1 state.

 

The present data deposit includes processed and quality-controlled data tables for:

1. Whole blood leukocytes profiled with the BD Rhapsody platform in a cohort of 39 sepsis patients (RNA and protein count matrices, as well as their accompanying metadata table)

2. Circulating HSCs in blood profiled with the 10X multiomics platform in a cohort of 27 sepsis patients (RNA and ATAC-seq count matrices, as well as their accompanying metadata tables)

 

IMPORTANT NOTE: The files in Version 1.0 are incomplete (missing the cell barcode list and gene/feature names).Please download Version 1.1 for the complete package (includes barcode and feature list files aligned to the matrices).