cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7925/drs1.ucdlib_264140
title: Manuscript of Michael J. Whelan's 'Paradox of the Peacekeeper in the Holy Land'

description: Handwritten presentation copy of the poem 'Paradox of the Peacekeeper in the Holy Land'.
DOI: 10.7925/drs1.ucdlib_264141
title: Michael J. Whelan reads his poem 'Roadside Bomb'

description: Michael J. Whelan reads his poem 'Roadside bomb' in UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264142
title: Manuscript of Michael J. Whelan's 'Roadside Bomb'

description: Handwritten presentation copy of the poem 'Roadside Bomb'.
DOI: 10.7925/drs1.ucdlib_264143
title: Michael J. Whelan reads his poem 'The Soldier's Face'

description: Michael Whelan reads his poem 'The Soldier's Face' in UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264144
title: Manuscript of Michael J. Whelan's 'The Soldier's Face'

description: Handwritten presentation copy of the poem 'The Soldier's Face'.
DOI: 10.7925/drs1.ucdlib_264145
title: Macdara Woods reads his poem 'Death in Venice: Panicale, August 1989'

description: Macdara Woods reads his poem 'Death in Venice: Panicale, August 1989' in UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264146
title: Macdara Woods reads his poem 'Fire and Snow and Carnevale'

description: Macdara Woods reads his poem 'Fire and Snow and Carnevale' in UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264147
title: Manuscript of Macdara Woods' 'Fire And Snow And Carnevale'

description: Handwritten presentation copy of the poem 'Fire and Snow and Carnevale'.
DOI: 10.7925/drs1.ucdlib_264148
title: Macdara Woods reads his poem 'From the Notebooks of Dr Jules Cotard (1840-1889)'

description: Macdara Woods reads his poem 'From the Notebooks of Dr. Jules Cotard (1840-1889)' in UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264149
title: Macdara Woods reads his poem 'Kavanagh in Umbria'

description: Macdara Woods reads his poem 'Kavanagh in Umbria in UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264150
title: Manuscript of Macdara Woods' 'Kavanagh In Umbria'

description: Handwritten presentation copy of the poem 'Kavanagh in Umbria'.
DOI: 10.7925/drs1.ucdlib_264151
title: Macdara Woods reads his poem 'Song for the Magic Mountain'

description: Macdara Woods reads his poem 'Song for the Magic Mountain' in UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264152
title: Adam Wyeth reads his poem 'Anatidaephobia'

description: Adam Wyeth reads his poem 'Anatidaephobia' for UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264153
title: Adam Wyeth reads his poem 'Dad'

description: Adam Wyeth reads his poem 'Dad' for UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264154
title: Manuscript of Adam Wyeth's 'Dad'

description: Handwritten presentation copy of the poem 'Dad'.
DOI: 10.7925/drs1.ucdlib_264155
title: Adam Wyeth reads his poem 'Girl with a Bag in Barcelona'

description: Adam Wyeth reads his poem 'Girl with a Bag in Barcelona' for UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264156
title: Adam Wyeth reads his poem 'Google Earth'

description: Adam Wyeth reads his poem 'Google Earth' for UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264157
title: Adam Wyeth reads his poem 'Metamorphosis'

description: Adam Wyeth reads his poem 'Metamorphosis' for UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264158
title: Adam Wyeth reads his poem 'Rough Music'

description: Adam Wyeth reads his poem 'Rough Music' for UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264159
title: Adam Wyeth reads his poem 'Rowan'

description: Adam Wyeth reads his poem 'Rowan' for UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264160
title: Manuscript of Adam Wyeth's 'Rowan'

description: Handwritten presentation copy of the poem 'Rowan'.
DOI: 10.7925/drs1.ucdlib_264161
title: Adam Wyeth reads his poem 'The World'

description: Adam Wyeth reads his poem 'The World' for UCD Library's Special Collections.
description: Credits: Ursula Byrne ; Evelyn Flanagan ; Brian Kelly ; Eugene Roche.
DOI: 10.7925/drs1.ucdlib_264162
title: Manuscript of Adam Wyeth's 'The World'

description: Handwritten presentation copy of the poem 'The World'.
DOI: 10.25592/uhhfdm.753
title: 3D-Model of a plaster cast of Aphrodite Braschi

description: 3D-Model of a plaster cast of Aphrodite Braschi https://www.fundus.uni-hamburg.de/de/collection_records/63513 Gipsabguss-Sammlung des Archäologischen Instituts der Universität Hamburg Inv.: 1 ID: 1 Forming shop : Molding at München, Bertolin Dimensions: hight: 162,5 cm / With: 62 cm / Depth: 48 cm Date: Greek original: 2. A.D.; roman copy: 1. B.C. Scenary: statuary motif goes back to Hellenism interpretation of Knidish Aphrodite to here visible Aphrodite Braschi. This 3D scan was made possible within the framework of the Hamburg Open Science programme by funding from the Ministry of Science, Research and Equality of the Free and Hanseatic City of Hamburg.
DOI: 10.25592/uhhfdm.657
title: 3D-Model of a plaster cast of Aphrodite Braschi

description: 3D-Model of a plaster cast of Aphrodite Braschi https://www.fundus.uni-hamburg.de/de/collection_records/63513 Gipsabguss-Sammlung des Archäologischen Instituts der Universität Hamburg Inv.: 1 ID: 1 Forming shop : Molding at München, Bertolin Dimensions: hight: 162,5 cm / With: 62 cm / Depth: 48 cm Date: Greek original: 2. A.D.; roman copy: 1. B.C. Scenary: statuary motif goes back to Hellenism interpretation of Knidish Aphrodite to here visible Aphrodite Braschi. This 3D scan was made possible within the framework of the Hamburg Open Science programme by funding from the Ministry of Science, Research and Equality of the Free and Hanseatic City of Hamburg.
DOI: 10.18112/openneuro.ds002900.v1.0.2
title: Spinal Cord MRI Public Database (Single-subject)
DOI: 10.5066/p9had6d0
title: Laboratory exposure of Chinook salmon (Oncorhynchus tshawytscha), coho salmon (O. kisutch) and rainbow trout (O. mykiss) to a Pacific Canadian strain of piscine orthoreovirus genotype one (PRV-1)

description: Piscine orthoreovirus genotype one (PRV-1) is the causative agent of heart and skeletal muscle inflammation (HSMI) in farmed Atlantic salmon (Salmo salar L.). The virus has also been found in Pacific salmonids in western North America, raising concerns about the risk to native salmon and trout. Here, we report the results of laboratory challenges using juvenile Chinook salmon, coho salmon, and rainbow trout injected with tissue homogenates from Atlantic salmon testing positive for PRV-1 or with control material. Fish were sampled at intervals to assess viral RNA transcript levels, hematocrit, erythrocytic inclusions, and histopathology. While PRV-1 replicated to high loads in all species, there was negligible mortality in any group. We observed a few erythrocytic inclusion bodies in fish from PRV-1 infected groups. At a few time points, hematocrits were significantly lower in the PRV-1 infected groups relative to controls but in no case was anemia noted. The most common histopathological finding was mild, focal myocarditis in both the non-infected controls and PRV-1 infected fish. All cardiac lesions were judged mild and none were consistent with those of HSMI. Together, these results suggest all three species are relatively susceptible to PRV-1 infection, but in no case did infection cause notable disease in these experiments.
DOI: 10.5281/zenodo.3899480
title: Discovery of protein modifications using high resolution differential mass spectrometry proteomics

description: This dataset contains processed files generated in the analyses described in "Discovery of protein modifications using high resolution differential mass spectrometry proteomics" by Cifani, Zhi, Luo et al., describing SAMPEI, a spectral alignment method for the identification of protein modifications using high-resolution mass spectrometry proteomics. Using synthetic standards and controlled chemical labeling experiments, we demonstrate high specificity and sensitivity of SAMPEI for the discovery of sub-stoichiometric protein modifications in complex cellular extracts. SAMPEI mapping of mouse macrophage differentiation revealed diverse post-translational protein modifications, including distinct forms of cysteine itaconatylation. SAMPEI is implemented as a Python package, and is available from BioConda and GitHub (https://github.com/FenyoLab/SAMPEI). The dataset is divided in 3 set of files: 1. Agnostic_discovery_benchmarking.zip file contains analyses performed to establish relative sensitivity and specificity of agnostic PTM discovery (Figure 2, Figure S3). 2. Chemoproteomics_of_LPS_stimulated_macrophages.zip file contains RAW264.7 cell proteomics identification results from X!tandem and SAMPEI (Figure 3, Figures S4-S7). 3. Itaconate_adducts_validation.zip file contains analysis to confirm cystein adducts produced by itaconic acid (Figure 5, Figures S8-S12).
DOI: 10.17037/data.00001787
title: Systematic analysis of infectious disease outcomes by age

description: Dataset made available to support a paper titled "Systematic analysis of infectious disease outcomes by age shows lowest severity in school-age children". Each table contains information on an infectious disease, and is ordered by age. See Data Collection Methods for further information.
description: Information on infections was found in different ways. PubMed was used to find reports on specific infections, searching with “case fatality” or “severity” or “hospital*”and “age”, or looking at reports of large outbreaks. Outbreak reports were also searched through the Morbidity and Mortality Weekly Report (MMWR) produced by the US Centers for Disease Control. To find suitable studies in the older literature, the journal Public Health was hand-searched from volume 1 (1888) to volume 59 (1946), the Public Health Bulletin from 1904-1949 and the issues of the Journal of Tropical Medicine and Hygiene available on-line (1915-19, 1921, 1923). All pamphlets and reports in the London School of Hygiene & Tropical Medicine library open shelves and books in the Wellcome collection library open shelves relating to infectious diseases were hand-searched. These include reports from the 19th century onwards. We also searched books and reports available electronically from the United States Public Health Service, US National Library of Medicine Digital Collections, the London School of Hygiene & Tropical Medicine, or Google on plague, cholera and yellow fever. The authors’ literature collection was searched, and relevant references followed (snowball searching). All identified studies that gave information on the age-pattern of severity were included if they satisfied the following criteria: [1] Included children and adults, [2] Data stratified in 10-year age groups or less, [3] At least 100 cases included, [4] Source of data given
DOI: 10.5281/zenodo.3901549
title: Paguroidea-Mollusca-Interactions

description: This database contains information regarding the use of shells (Mollusca) by hermit crabs (Paguroidea) from the Southern Gulf of Mexico and the Mexican Caribbean Sea. The information was obtained as part of the Biodiversity of the Southern Gulf of Mexico project of the Yucatan Marine Biodiversity Laboratory (UNAM) The material is deposited in the Yucatan Crustacean Collection (CCY). Esta base datos contiene información referente al uso de conchas (Mollusca) por parte de cangrejos ermitaños (Paguroidea) del sur del golfo de México y el mar caribe mexicano. La información fue obtenida como parte del proyecto Biodiversidad del Sur del Golfo de México del laboratorio Biodiversidad marina de Yucatán (UNAM). El material está depositado en la Colección de Crustáceos de Yucatán (CCY).
DOI: 10.5281/zenodo.3901548
title: Paguroidea-Mollusca-Interactions

description: This database contains information regarding the use of shells (Mollusca) by hermit crabs (Paguroidea) from the Southern Gulf of Mexico and the Mexican Caribbean Sea. The information was obtained as part of the Biodiversity of the Southern Gulf of Mexico project of the Yucatan Marine Biodiversity Laboratory (UNAM) The material is deposited in the Yucatan Crustacean Collection (CCY). Esta base datos contiene información referente al uso de conchas (Mollusca) por parte de cangrejos ermitaños (Paguroidea) del sur del golfo de México y el mar caribe mexicano. La información fue obtenida como parte del proyecto Biodiversidad del Sur del Golfo de México del laboratorio Biodiversidad marina de Yucatán (UNAM). El material está depositado en la Colección de Crustáceos de Yucatán (CCY).
DOI: 10.5281/zenodo.3876083
title: Data and code for Chong, Moroni, et al. (2020) Science: "Manipulating synthetic optogenetic odors reveals the coding logic of olfactory perception"

description: Behavioral response dataset, mitral cell responses, and code to implement the STM model in Chong, Moroni, Wilson, Shoham, Panzeri and Rinberg (2020) Science. Please contact Edmund Chong (edmund.w.chong@gmail.com) and Monica Moroni (monica.moroni@outlook.com) for questions
DOI: 10.5281/zenodo.3876082
title: Data and code for Chong, Moroni, et al. (2020) Science: "Manipulating synthetic optogenetic odors reveals the coding logic of olfactory perception"

description: Behavioral response dataset, mitral cell responses, and code to implement the STM model in Chong, Moroni, Wilson, Shoham, Panzeri and Rinberg (2020) Science. Please contact Edmund Chong (edmund.w.chong@gmail.com) and Monica Moroni (monica.moroni@outlook.com) for questions
DOI: 10.25592/uhhfdm.1056
title: 3D Model of a plaster cast of "Small Herculean"

description: 3D Model of a plaster cast of "Small Herculean" https://www.fundus.uni-hamburg.de/de/collections/archeology Gipsabguss-Sammlung des Archäologischen Instituts der Universität Hamburg This 3D scan was made possible within the framework of the Hamburg Open Science programme by funding from the Ministry of Science, Research and Equality of the Free and Hanseatic City of Hamburg.
DOI: 10.25592/uhhfdm.975
title: 3D Model of a plaster cast of "Small Herculean"

description: 3D Model of a plaster cast of "Small Herculean" https://www.fundus.uni-hamburg.de/de/collections/archeology Gipsabguss-Sammlung des Archäologischen Instituts der Universität Hamburg This 3D scan was made possible within the framework of the Hamburg Open Science programme by funding from the Ministry of Science, Research and Equality of the Free and Hanseatic City of Hamburg.
DOI: 10.5519/qd.3d4pmyb1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2 records)
DOI: 10.13140/rg.2.2.35556.60808
title: Household Waste
DOI: 10.18112/openneuro.ds002766.v2.0.1
title: Cast-induced plasticity
DOI: 10.5281/zenodo.3876983
title: Assessing the potential impact of COVID-19 in Brazil: Mobility, Morbidity and the burden on the Health Care System

description: Data used in the paper
DOI: 10.5281/zenodo.3876982
title: Assessing the potential impact of COVID-19 in Brazil: Mobility, Morbidity and the burden on the Health Care System

description: Data used in the paper
DOI: 10.5281/zenodo.3490934
title: 3D models related to the article 'The earliest domestic cat on the Silk Road' by Haruda et al.

description: Three-dimensional models of <em>Felis catus</em> remains built using photogrammetry and Autodesk ReCap (post cranials, vertebrae and mandibles) and with a NextEngine laser scanner and Scan Studio (skull). Remains from the archaeological site of Dhzankent, Kazakhstan, and have been radiocarbon dated to 774-940 cal CE.
DOI: 10.5281/zenodo.3490933
title: 3D models related to the article 'The earliest domestic cat on the Silk Road' by Haruda et al.

description: Three-dimensional models of <em>Felis catus</em> remains built using photogrammetry and Autodesk ReCap (post cranials, vertebrae and mandibles) and with a NextEngine laser scanner and Scan Studio (skull). Remains from the archaeological site of Dhzankent, Kazakhstan, and have been radiocarbon dated to 774-940 cal CE.
DOI: 10.7910/dvn/4rqwxw/i2bvw1
title: Code_Experiment.R

description: :unav
DOI: 10.7910/dvn/4rqwxw/xopavf
title: Code_Original_Survey.R

description: :unav
DOI: 10.7910/dvn/4rqwxw/pbhxex
title: Code_LAPOP.R

description: :unav
DOI: 10.5287/bodleian:aqepavew8
title: Metabolomics of 293T wild-type cells cultured under different glucose conditions
DOI: 10.5287/bodleian:2abvoavrg
title: Metabolomics of the first culture of LN18 IDH1 mutant and wild-type cells
DOI: 10.5287/bodleian:1rej0ya8z
title: Metabolomics of the third culture of LN18 IDH1 mutant and wild-type cells
DOI: 10.5281/zenodo.3901532
title: Evaluation of various RNA-seq approaches for identification of outrons in the flatworm Opisthorchis felineus

description: As a result of spliced leader trans-splicing (SLTS), the original 5'-end (outron) of the transcripts is replaced by a short spliced leader sequence, donated from a specialized SL RNA. SLTS is involved in the RNA processing of more than half of <em>O. felineus</em> genes, making it hard to determine the structure of outrons and bona fide transcription start sites of the corresponding genes and operons, being based solely on mRNA-seq data. In the study, associated with the current dataset, we evaluated four experimental approaches for identifying outrons in <em>O. felineus</em> using low-depth massive parallel sequencing. Two of them were developed by us for targeted sequencing of already processed outrons. The first (<strong>SLi-RT</strong>) is based on a sequence-specific reverse transcription from the SL intron toward the 5'-end of the Y-branched outron. The second (<strong>SLi-BC</strong>) utilizes outron hybridization with an immobilized single-stranded DNA probe complementary to the SL intron. Additionally, two approaches to the sequencing of rRNA-depleted total RNA, the commercially available Zymo-Seq RiboFree kit (<strong>ZymoSeq</strong>) and digestion by Terminator<sup>TM</sup> 5´-Phosphate-Dependent Exonuclease (<strong>TermExo</strong>), were used to assess the identification of a wider range of transcripts compared to mRNA-seq. The dataset contains the raw paired-end data in FASTQ format for the corresponding RNA-seq libraries sequenced at a low depth on Illumina MiSeq platform.
description: The work was supported by the Russian Science Foundation under grant 18-74-00101
DOI: 10.5281/zenodo.3901531
title: Evaluation of various RNA-seq approaches for identification of outrons in the flatworm Opisthorchis felineus

description: As a result of spliced leader trans-splicing (SLTS), the original 5'-end (outron) of the transcripts is replaced by a short spliced leader sequence, donated from a specialized SL RNA. SLTS is involved in the RNA processing of more than half of <em>O. felineus</em> genes, making it hard to determine the structure of outrons and bona fide transcription start sites of the corresponding genes and operons, being based solely on mRNA-seq data. In the study, associated with the current dataset, we evaluated four experimental approaches for identifying outrons in <em>O. felineus</em> using low-depth massive parallel sequencing. Two of them were developed by us for targeted sequencing of already processed outrons. The first (<strong>SLi-RT</strong>) is based on a sequence-specific reverse transcription from the SL intron toward the 5'-end of the Y-branched outron. The second (<strong>SLi-BC</strong>) utilizes outron hybridization with an immobilized single-stranded DNA probe complementary to the SL intron. Additionally, two approaches to the sequencing of rRNA-depleted total RNA, the commercially available Zymo-Seq RiboFree kit (<strong>ZymoSeq</strong>) and digestion by Terminator<sup>TM</sup> 5´-Phosphate-Dependent Exonuclease (<strong>TermExo</strong>), were used to assess the identification of a wider range of transcripts compared to mRNA-seq. The dataset contains the raw paired-end data in FASTQ format for the corresponding RNA-seq libraries sequenced at a low depth on Illumina MiSeq platform.
description: The work was supported by the Russian Science Foundation under grant 18-74-00101
DOI: 10.5287/bodleian:eyq4qj8ar
title: Metabolomics of the second culture of LN18 IDH1 mutant and wild-type cells
DOI: 10.5287/bodleian:0zjjxpoek
title: Metabolomics of LN18 wild-type cells cultured under different glucose conditions
DOI: 10.5281/zenodo.3901648
title: Data and code for project on maternal age and recombination rate in Drosophila pseudoobscura

description: Github repository containing data files and scripts to reproduce the analysis for the manuscript titled: <strong>"Maternal age alters recombination rate in <em>Drosophila pseudoobscura</em>"</strong>.
DOI: 10.5281/zenodo.3901647
title: Data and code for project on maternal age and recombination rate in Drosophila pseudoobscura

description: Github repository containing data files and scripts to reproduce the analysis for the manuscript titled: <strong>"Maternal age alters recombination rate in <em>Drosophila pseudoobscura</em>"</strong>.
DOI: 10.5281/zenodo.3901661
title: Stevison Lab dataset and code for peak plasticity project

description: Github repository containing data files and scripts to reproduce the analysis for the manuscript titled: <strong>"refining the peak time point for recombination rate plasticity in <em>Drosophila pseudoobscura</em>"</strong>
DOI: 10.5281/zenodo.3901660
title: Stevison Lab dataset and code for peak plasticity project

description: Github repository containing data files and scripts to reproduce the analysis for the manuscript titled: <strong>"refining the peak time point for recombination rate plasticity in <em>Drosophila pseudoobscura</em>"</strong>
DOI: 10.15468/4sjkzf
title: Notes on Catulona Rolston, 1992, and the description of a new species from Brazil (Hemiptera, Pentatomidae, Discocephalinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Campos, Luiz Alexandre, Grazia, Jocélia, Greve, Caroline (2004): Notes on Catulona Rolston, 1992, and the description of a new species from Brazil (Hemiptera, Pentatomidae, Discocephalinae). Zootaxa 404: 1-7, DOI: 10.11646/zootaxa.404.1.1
DOI: 10.5281/zenodo.3901666
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Shorthouse, David Peter, https://orcid.org/0000-0001-7618-5230. Claims were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5281/zenodo.3901665
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Shorthouse, David Peter, https://orcid.org/0000-0001-7618-5230. Claims were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.