cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2f0vmy
title: CCDC 2235150: Experimental Crystal Structure Determination

description: Related Article: Sumit Sahoo, Maheshwari Horalavadi Mahadavaiah, Dandamudi Usharani, Harapriya Rath|2023|Org.Lett.|25|1491|doi:10.1021/acs.orglett.3c00230
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6784812
title: spotQuant_Mmm1_Mdm12_Mdm34

description: Raw fluorescence images used for spot_quant fluorescence quantification of target ERMES strains (Mdm12-EGFP = WKY0119, Mdm34-EGFP = WKY0432, Mmm1-EGFP = WKY0433) and reference kinetochore strains (Cse4-EGFP Tom20-mCherry = WKY0421, Nuf2-EGFP = WKY0337).
DOI: 10.5281/zenodo.6784811
title: spotQuant_Mmm1_Mdm12_Mdm34

description: Raw fluorescence images used for spot_quant fluorescence quantification of target ERMES strains (Mdm12-EGFP = WKY0119, Mdm34-EGFP = WKY0432, Mmm1-EGFP = WKY0433) and reference kinetochore strains (Cse4-EGFP Tom20-mCherry = WKY0421, Nuf2-EGFP = WKY0337).
DOI: 10.6073/pasta/1c93c092cc9728e1d8d8b497b90eab3a
title: Precipitation data for C1 chart recorder, 1952 - ongoing.

description: Precipitation data were collected on a daily time-scale from the C1 climate station (3018 m) since 1952. Over time various circumstances have led to days with missing values. Some of these values were estimated from nearby climate stations.
DOI: 10.6073/pasta/5a5de35cba70fa1c419a44707f7ba333
title: Precipitation data for D1 chart recorder, 1964 - ongoing.

description: Precipitation data were collected on a daily time-scale from the D1 climate station (3743 m) since 1964. Over time, various circumstances have led to days with missing values. Some of these values were estimated from nearby climate stations.
DOI: 10.6084/m9.figshare.22281973
title: Galves_procb_ESM_Table S1 from Transcriptional profiling of the response to starvation and fattening reveals differential regulation of autophagy genes in mammals

description: Gene Expression of HBSS Starved.vs.Full Media_Control
DOI: 10.6084/m9.figshare.22281973.v1
title: Galves_procb_ESM_Table S1 from Transcriptional profiling of the response to starvation and fattening reveals differential regulation of autophagy genes in mammals

description: Gene Expression of HBSS Starved.vs.Full Media_Control
DOI: 10.6084/m9.figshare.22281976
title: Galves_procb_ESM_Table S5 from Transcriptional profiling of the response to starvation and fattening reveals differential regulation of autophagy genes in mammals

description: Autophagy_HFD_datasets_DE_analysis
DOI: 10.6084/m9.figshare.22281976.v1
title: Galves_procb_ESM_Table S5 from Transcriptional profiling of the response to starvation and fattening reveals differential regulation of autophagy genes in mammals

description: Autophagy_HFD_datasets_DE_analysis
DOI: 10.6084/m9.figshare.22281979
title: Galves_procb_ESM_Table S2 from Transcriptional profiling of the response to starvation and fattening reveals differential regulation of autophagy genes in mammals

description: DEGs_GO_cluster Profiler Induced_by_Starvation
DOI: 10.6084/m9.figshare.22281979.v1
title: Galves_procb_ESM_Table S2 from Transcriptional profiling of the response to starvation and fattening reveals differential regulation of autophagy genes in mammals

description: DEGs_GO_cluster Profiler Induced_by_Starvation
DOI: 10.6084/m9.figshare.22276720.v1
title: Different ecosystems bacterial ASV data

description: 1379 soil samples (390 agricultural fields, 337 forests, 347grasslands, and 305 wetlands) across China .
DOI: 10.25919/n2k6-6b21
title: Noble gases in fluid inclusions

description: Literature review of mineral crushing techniques for noble gas analysis. Noble gases are frequently probed for investigating fluid inclusions in minerals to unravel rock-forming processes through time.
DOI: 10.6084/m9.figshare.22276720
title: Different ecosystems bacterial ASV data

description: 1379 soil samples (390 agricultural fields, 337 forests, 347grasslands, and 305 wetlands) across China .
DOI: 10.6084/m9.figshare.22276720.v2
title: Different ecosystems bacterial ASV data

description: 1379 soil samples (390 agricultural fields, 337 forests, 347grasslands, and 305 wetlands) across China .
DOI: 10.5281/zenodo.7739287
title: Diffusion MRI/ PET Simulation

description: These data are designed to simulate diffusion-weighted images using Fibrefox, analytical PET simulation with ASIM, and PET image reconstruction with STIR. file description /MRI<br> Fibers.fib: the ground-truth fiber tracks file from Tractography Challenge ISMRM 2015 Data<br> bvals, bvecs: the encoding scheme files for DWI simulation (similar to HCP protocol)<br> t1.mif: the fabricated T1 image<br> dwi.mif: the example DWI file simulated /PET<br> AAL_ROI_upsample: a template phantom file with 3 lesions <br> asim_pipeline.sh: batch code for ASIM simulation<br> AAL_ROI_noisy_2: normalised PET sinogram 1e+08 total count, ready to be reconstructed<br> AAL_ROI_noisy.yaff: normalised PET sinogram 1e+07 total count, ready to be reconstructed<br> AAL_ROI_noisy_2.yhdr: ASIM header file<br> OSEM_m962,par hdr_E_m962.hs: header files for STIR reconstruction with OSMAPOSL
DOI: 10.5281/zenodo.7739286
title: Diffusion MRI/ PET Simulation

description: These data are designed to simulate diffusion-weighted images using Fibrefox, analytical PET simulation with ASIM, and PET image reconstruction with STIR. file description /MRI<br> Fibers.fib: the ground-truth fiber tracks file from Tractography Challenge ISMRM 2015 Data<br> bvals, bvecs: the encoding scheme files for DWI simulation (similar to HCP protocol)<br> t1.mif: the fabricated T1 image<br> dwi.mif: the example DWI file simulated /PET<br> AAL_ROI_upsample: a template phantom file with 3 lesions <br> asim_pipeline.sh: batch code for ASIM simulation<br> AAL_ROI_noisy_2: normalised PET sinogram 1e+08 total count, ready to be reconstructed<br> AAL_ROI_noisy.yaff: normalised PET sinogram 1e+07 total count, ready to be reconstructed<br> AAL_ROI_noisy_2.yhdr: ASIM header file<br> OSEM_m962,par hdr_E_m962.hs: header files for STIR reconstruction with OSMAPOSL
DOI: 10.5281/zenodo.7739121
title: Quantifying the diets of a non-native and native predator during juvenile salmon out-migrations in the Columbia River

description: This is the clean and raw data files needed to replicate the analysis for our paper. The data contains carbon and nitrogen stable isotope data from several species of fish collected in the upper John Day Reservoir in Washington State in 2012. The data contains stable isotope signatures from predatory Walleye and Northern Pikeminnow, as well as potential prey species. A spreadsheet with descriptions of the column names is included. All of the code and analysis can be found at Karl Veggerby's Github: https://github.com/veggerk/Columbia-River-predatory-fish-study
DOI: 10.5281/zenodo.7739120
title: Quantifying the diets of a non-native and native predator during juvenile salmon out-migrations in the Columbia River

description: This is the clean and raw data files needed to replicate the analysis for our paper. The data contains carbon and nitrogen stable isotope data from several species of fish collected in the upper John Day Reservoir in Washington State in 2012. The data contains stable isotope signatures from predatory Walleye and Northern Pikeminnow, as well as potential prey species. A spreadsheet with descriptions of the column names is included. All of the code and analysis can be found at Karl Veggerby's Github: https://github.com/veggerk/Columbia-River-predatory-fish-study
DOI: 10.5517/ccdc.csd.cc2f6t7q
title: CCDC 2240873: Experimental Crystal Structure Determination

description: Related Article: Xianliang Wang, Kari Rissanen, Carsten Bolm|2023|Org.Lett.|25|1569|doi:10.1021/acs.orglett.3c00415
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22198177
title: Hepatic but not intestinal FBP1 is required for fructose metabolism and tolerance

description: Fructose intolerance in mammals is caused by the defects in fructose absorption and metabolism. Fructose-1,6-bisphosphatase 1 (FBP1) is a key enzyme in gluconeogenesis, and its deficiency results in hypoglycemia as well as intolerance to fructose. However, the mechanism about the fructose intolerance caused by FBP1 deficiency has not been fully elucidated. Here, we demonstrate that hepatic but not intestinal FBP1 is required for fructose metabolism and tolerance. We generated inducible knockout mouse models specifically lacking FBP1 in adult intestine or liver, respectively. Intestine-specific deletion of <em>Fbp1 </em>in adult mice does not compromise fructose tolerance, as evidenced by no significant body weight loss, food intake reduction, or morphological changes of small intestine during 4 weeks of exposure to high-fructose diet. By contrast, liver-specific deletion of <em>Fbp1</em> in adult mice leads to fructose intolerance, as manifested by a substantial weight loss, hepatomegaly, and liver injury after exposure to the high-fructose diet. Notably, the fructose metabolite fructose-1-phosphate is accumulated in FBP1-deficient liver, which indicates a defect of fructolysis and may account for the fructose intolerance. In conclusion, these data have clarified the essential role of hepatic but not intestinal FBP1 in fructose metabolism and tolerance.
DOI: 10.6084/m9.figshare.22198177.v1
title: Hepatic but not intestinal FBP1 is required for fructose metabolism and tolerance

description: Fructose intolerance in mammals is caused by the defects in fructose absorption and metabolism. Fructose-1,6-bisphosphatase 1 (FBP1) is a key enzyme in gluconeogenesis, and its deficiency results in hypoglycemia as well as intolerance to fructose. However, the mechanism about the fructose intolerance caused by FBP1 deficiency has not been fully elucidated. Here, we demonstrate that hepatic but not intestinal FBP1 is required for fructose metabolism and tolerance. We generated inducible knockout mouse models specifically lacking FBP1 in adult intestine or liver, respectively. Intestine-specific deletion of <em>Fbp1 </em>in adult mice does not compromise fructose tolerance, as evidenced by no significant body weight loss, food intake reduction, or morphological changes of small intestine during 4 weeks of exposure to high-fructose diet. By contrast, liver-specific deletion of <em>Fbp1</em> in adult mice leads to fructose intolerance, as manifested by a substantial weight loss, hepatomegaly, and liver injury after exposure to the high-fructose diet. Notably, the fructose metabolite fructose-1-phosphate is accumulated in FBP1-deficient liver, which indicates a defect of fructolysis and may account for the fructose intolerance. In conclusion, these data have clarified the essential role of hepatic but not intestinal FBP1 in fructose metabolism and tolerance.
DOI: 10.6084/m9.figshare.22198177.v2
title: Hepatic but not intestinal FBP1 is required for fructose metabolism and tolerance

description: Fructose intolerance in mammals is caused by the defects in fructose absorption and metabolism. Fructose-1,6-bisphosphatase 1 (FBP1) is a key enzyme in gluconeogenesis, and its deficiency results in hypoglycemia as well as intolerance to fructose. However, the mechanism about the fructose intolerance caused by FBP1 deficiency has not been fully elucidated. Here, we demonstrate that hepatic but not intestinal FBP1 is required for fructose metabolism and tolerance. We generated inducible knockout mouse models specifically lacking FBP1 in adult intestine or liver, respectively. Intestine-specific deletion of <em>Fbp1 </em>in adult mice does not compromise fructose tolerance, as evidenced by no significant body weight loss, food intake reduction, or morphological changes of small intestine during 4 weeks of exposure to high-fructose diet. By contrast, liver-specific deletion of <em>Fbp1</em> in adult mice leads to fructose intolerance, as manifested by a substantial weight loss, hepatomegaly, and liver injury after exposure to the high-fructose diet. Notably, the fructose metabolite fructose-1-phosphate is accumulated in FBP1-deficient liver, which indicates a defect of fructolysis and may account for the fructose intolerance. In conclusion, these data have clarified the essential role of hepatic but not intestinal FBP1 in fructose metabolism and tolerance.
DOI: 10.6084/m9.figshare.22282486
title: Hepatic but not intestinal FBP1 is required for fructose metabolism and tolerance

description: Fructose intolerance in mammals is caused by the defects in fructose absorption and metabolism. Fructose-1,6-bisphosphatase 1 (FBP1) is a key enzyme in gluconeogenesis, and its deficiency results in hypoglycemia as well as intolerance to fructose. However, the mechanism about the fructose intolerance caused by FBP1 deficiency has not been fully elucidated. Here, we demonstrate that hepatic but not intestinal FBP1 is required for fructose metabolism and tolerance. We generated inducible knockout mouse models specifically lacking FBP1 in adult intestine or liver, respectively. Intestine-specific deletion of <em>Fbp1 </em>in adult mice does not compromise fructose tolerance, as evidenced by no significant body weight loss, food intake reduction, or morphological changes of small intestine during 4 weeks of exposure to high-fructose diet. By contrast, liver-specific deletion of <em>Fbp1</em> in adult mice leads to fructose intolerance, as manifested by a substantial weight loss, hepatomegaly, and liver injury after exposure to the high-fructose diet. Notably, the fructose metabolite fructose-1-phosphate is accumulated in FBP1-deficient liver after fructose challenge, which indicates a defect of fructolysis probably due to competitive inhibition by fructose-1,6-bisphosphate and may account for the fructose intolerance. In conclusion, these data have clarified the essential role of hepatic but not intestinal FBP1 in fructose metabolism and tolerance.
DOI: 10.6084/m9.figshare.21823455.v30
title: The ReptileEvolution.com Project

description: Taxon exclusion is the number one problem currently vexing paleontology. The search for pterosaur, turtle, bat, snake, whale, reptile and tetrapod ancestors continues to unnecessarily befuddle paleontologists who continue to work from cherry-picked, textbook and traditional taxon lists that overlook and omit pertinent taxa. That’s why the large reptile tree (LRT), the nearly completely resolved cladogram at the heart of www.ReptileEvolution.com, includes 2212 taxa. Larger taxon numbers minimize taxon exclusion issues. Results indicate the simple act of adding taxa resolves all phylogenetic issues.
DOI: 10.5281/zenodo.7737674
title: HeiPorSPECTRAL - the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs

description: Hyperspectral Imaging (HSI) is a relatively new medical imaging modality that exploits an area of diagnostic potential formerly untouched. Although exploratory translational and clinical studies exist, no surgical HSI datasets are openly accessible to the general scientific community. To address this bottleneck, this publication releases HeiPorSPECTRAL (https://www.heiporspectral.org), the first annotated high-quality standardized HSI dataset. It comprises 5,758 spectral images acquired with the TIVITA Tissue and annotated with 20 physiological porcine organs in a total number of 11 pigs. Each HSI image features a resolution of 480 x 640 pixels acquired over the 500-1000 nm wavelength range. The acquisition protocol has been designed such that the variability of organ spectra as a function of several parameters including the camera pose and the individual can be assessed. A comprehensive technical validation confirmed both the quality of the raw data and the annotations. We envision potential reuse within this dataset, but also its reuse as baseline data for future research questions outside this dataset, such as the detection of pathologies.
DOI: 10.5281/zenodo.7737673
title: HeiPorSPECTRAL - the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs

description: Hyperspectral Imaging (HSI) is a relatively new medical imaging modality that exploits an area of diagnostic potential formerly untouched. Although exploratory translational and clinical studies exist, no surgical HSI datasets are openly accessible to the general scientific community. To address this bottleneck, this publication releases HeiPorSPECTRAL (https://www.heiporspectral.org), the first annotated high-quality standardized HSI dataset. It comprises 5,758 spectral images acquired with the TIVITA Tissue and annotated with 20 physiological porcine organs in a total number of 11 pigs. Each HSI image features a resolution of 480 x 640 pixels acquired over the 500-1000 nm wavelength range. The acquisition protocol has been designed such that the variability of organ spectra as a function of several parameters including the camera pose and the individual can be assessed. A comprehensive technical validation confirmed both the quality of the raw data and the annotations. We envision potential reuse within this dataset, but also its reuse as baseline data for future research questions outside this dataset, such as the detection of pathologies.
DOI: 10.5281/zenodo.7735004
title: Assessment of the Genetic Diversity and Population Structure of the Peruvian Andean Legume, Tarwi (Lupinus mutabilis), with High Quality SNPs

description: <em>Lupinus mutabilis</em> Sweet (Fabaceae), “tarwi” or “chocho”, is an important grain legume in the Andean region. In Peru, studies on tarwi have mainly focused on morphological features; however, they have not been molecularly characterized. Currently, it is possible to explore the genetic parameters of plants with reliable and modern methods such as genotyping by sequencing (GBS). Here, for the first time, we used single nucleotide polymorphism (SNP) markers to infer the genetic diversity and population structure of 89 accessions of tarwi from nine Andean regions of Peru. A total of 5922 SNPs distributed along all chromosomes of tarwi were identified. STRUCTURE analysis revealed that this crop is grouped into two clusters. A dendrogram was generated using the UPGMA clustering algorithm and, like the principal coordinate analysis (PCoA), it showed two groups that correspond to the geographic origin of the tarwi samples. AMOVA showed a reduced variation between clusters (7.59%) and indicated that variability within populations is 92.41%. Population divergence (F<sub>st</sub>) between clusters 1 and 2 revealed low genetic difference (0.019). We also detected a negative F<sub>is</sub> for both populations, demonstrating that, like other <em>Lupinus</em> species, tarwi also depends on cross-pollination. SNP markers were powerful and effective for the genotyping process in this germplasm. We hope that this information is the beginning of the path towards a modern genetic improvement and conservation strategies of this important Andean legume.
DOI: 10.5281/zenodo.7735003
title: Assessment of the Genetic Diversity and Population Structure of the Peruvian Andean Legume, Tarwi (Lupinus mutabilis), with High Quality SNPs

description: <em>Lupinus mutabilis</em> Sweet (Fabaceae), “tarwi” or “chocho”, is an important grain legume in the Andean region. In Peru, studies on tarwi have mainly focused on morphological features; however, they have not been molecularly characterized. Currently, it is possible to explore the genetic parameters of plants with reliable and modern methods such as genotyping by sequencing (GBS). Here, for the first time, we used single nucleotide polymorphism (SNP) markers to infer the genetic diversity and population structure of 89 accessions of tarwi from nine Andean regions of Peru. A total of 5922 SNPs distributed along all chromosomes of tarwi were identified. STRUCTURE analysis revealed that this crop is grouped into two clusters. A dendrogram was generated using the UPGMA clustering algorithm and, like the principal coordinate analysis (PCoA), it showed two groups that correspond to the geographic origin of the tarwi samples. AMOVA showed a reduced variation between clusters (7.59%) and indicated that variability within populations is 92.41%. Population divergence (F<sub>st</sub>) between clusters 1 and 2 revealed low genetic difference (0.019). We also detected a negative F<sub>is</sub> for both populations, demonstrating that, like other <em>Lupinus</em> species, tarwi also depends on cross-pollination. SNP markers were powerful and effective for the genotyping process in this germplasm. We hope that this information is the beginning of the path towards a modern genetic improvement and conservation strategies of this important Andean legume.
DOI: 10.5519/qd.qdjv7art
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (198 records)
DOI: 10.5281/zenodo.7739453
title: QGIS Data for Canadian Population, PM2.5, Nighttime lights.

description: This is the dataset for the QGIS analysis for Canadian Population, PM2.5, Nighttime lights.
DOI: 10.5281/zenodo.7739452
title: QGIS Data for Canadian Population, PM2.5, Nighttime lights.

description: This is the dataset for the QGIS analysis for Canadian Population, PM2.5, Nighttime lights.
DOI: 10.6084/m9.figshare.21995072.v3
title: Files for Main Figure 3

description: Quantified TEs in TPM counts in simulated short-read measured by 7 approaches. File used for main figure 3. <br> Information about column names TE_name: Name of TE individuals TE_label: Positions of TE individuals length: TE lengths Long: Long-read TE output org_tel: Telescope TE output mod_tel: LocusMasterTE TE output squire: Squire TE output uniq: Unique counts from Telescope TE output best: Best counts from Telescope TE output rsem: RSEM TE output salmonTE: salmonTE TE output
DOI: 10.14457/rmutk.doc.2022.3
title: จรรยาบรรณวิชาชีพและกฎหมาย เพื่อการท่องเที่ยวและการโรงแรม
DOI: 10.6084/m9.figshare.22283347.v1
title: Original data

description: Original data
DOI: 10.5519/qd.kw2juium
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)