cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6584835
title: Comparison of Cosine, Modified Cosine, and Neutral Loss Based Spectral Alignment For Discovery of Structurally Related Molecules

description: Spectral libraries and analysis results of the evaluation between the cosine similarity, modified cosine similarity, and neutral loss matching for the discovery of structurally related molecules. Spectral libraries used as input:<br> - MassIVE-KB peptide spectral library (version 2018/06/15): LIBRARY_CREATION_AUGMENT_LIBRARY_TEST-82c0124b-download_filtered_mgf_library-main.mgf<br> - GNPS community spectral libraries (downloaded on 2022/05/12): ALL_GNPS_NO_PROPOGATED.mgf<br> - GNPS bile acids spectral library (downloaded on 2022/05/12): BILELIB19.mgf Analysis output results:<br> - massivekb_peptide_mods.csv: 955,228 peptide MS/MS spectrum pairs from MassIVE-KB<br> - gnps_libraries.csv: 10 million small molecule MS/MS spectrum pairs from the GNPS community spectral libraries<br> - gnps_bilelib.csv: 340,637 bile acids MS/MS spectrum pairs from the GNPS bile acids spectral library For more information, see: https://github.com/bittremieux/cosine_neutral_loss/
DOI: 10.35077/imp
title: Cell type distribution in female and male mouse brains / SERT_GFP_F8_200131

description: This project proposes to establish an Anatomical Collaboratory for Systematic Atlasing of Cell-Type Distribution and Morphology in female and male brain. This Collaboratory will apply standardized, unbiased and largely automated methods developed in the group’s laboratories to atlas the distribution and morphology of &gt;80 molecularly defined cell classes and cell type across all regions of the female and male brain. This work will yield the most comprehensive characterization of cell type anatomy in the mammalian brain to date, establishing a structural basis for building an integrated Cell Type Brain Atlas.
description: DATASET METADATA: title:'Cell type distribution in female and male mouse brains / SERT_GFP_F8_200131', GeneralModality:'population imaging', Technique:'other', Other:'cell distribution' SPECIMEN METADATA: LocalID:'SERT_GFP_F8_200131', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'unknown', Ageunit:'Days', Sex:'Female', Genotype:'R26-CAG-LSL-H2B-GFP/R26-CAG-LSL-H2B-GFP; Sert/wt', OrganName:'Brain', SampleLocalID:'SERT_GFP_F8_200131' INSTRUMENT METADATA: MicroscopeType:'Two Photon', MicroscopeManufacturerAndModel:'TissueVision' IMAGE METADATA: xAxis:'superior-to-inferior', yAxis:'right-to-left', zAxis:'anterior-to-posterior', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'32 micron/pixel', stepSizeY:'32 micron/pixel', stepSizeZ:'81 micron/pixel'
DOI: 10.35077/ink
title: Cell type distribution in female and male mouse brains / Slc17a6_GFP_484308_200706

description: This project proposes to establish an Anatomical Collaboratory for Systematic Atlasing of Cell-Type Distribution and Morphology in female and male brain. This Collaboratory will apply standardized, unbiased and largely automated methods developed in the group’s laboratories to atlas the distribution and morphology of &gt;80 molecularly defined cell classes and cell type across all regions of the female and male brain. This work will yield the most comprehensive characterization of cell type anatomy in the mammalian brain to date, establishing a structural basis for building an integrated Cell Type Brain Atlas.
description: DATASET METADATA: title:'Cell type distribution in female and male mouse brains / Slc17a6_GFP_484308_200706', GeneralModality:'population imaging', Technique:'other', Other:'cell distribution' SPECIMEN METADATA: LocalID:'Slc17a6_GFP_484308_200706', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'unknown', Ageunit:'Days', Sex:'Unknown', Genotype:'R26-CAG-LSL-H2B-GFP/R26-CAG-LSL-H2B-GFP; Slc17a6/Slc17a6', OrganName:'Brain', SampleLocalID:'Slc17a6_GFP_484308_200706' INSTRUMENT METADATA: MicroscopeType:'Two Photon', MicroscopeManufacturerAndModel:'TissueVision' IMAGE METADATA: xAxis:'superior-to-inferior', yAxis:'right-to-left', zAxis:'anterior-to-posterior', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'33 micron/pixel', stepSizeY:'33 micron/pixel', stepSizeZ:'82 micron/pixel'
DOI: 10.21227/my4x-mz70
title: A Guidebook on Jiles-Atherton Model Parameter Approximation Based on Simulated B-H Curves

description: This handbook and dataset provides a large set of ferromagnetic saturation curves with Hysteresis based on JA model and nonlinear reluctance of Matlab/Simulink/Simscape.The saturation curves are available for different materials, but for simulations, the JA parameters are also needed which are not available to the public. Therefore, this handbook will help researchers to find the best fit between their specimen and curves provided in this handbook to find the approximate JA parametes to use, or start fiding accurate JA using them as the initial values.
DOI: 10.35077/irk
title: Cell type distribution in female and male mouse brains / Slc17a6_GFP_492024_200707

description: This project proposes to establish an Anatomical Collaboratory for Systematic Atlasing of Cell-Type Distribution and Morphology in female and male brain. This Collaboratory will apply standardized, unbiased and largely automated methods developed in the group’s laboratories to atlas the distribution and morphology of &gt;80 molecularly defined cell classes and cell type across all regions of the female and male brain. This work will yield the most comprehensive characterization of cell type anatomy in the mammalian brain to date, establishing a structural basis for building an integrated Cell Type Brain Atlas.
description: DATASET METADATA: title:'Cell type distribution in female and male mouse brains / Slc17a6_GFP_492024_200707', GeneralModality:'population imaging', Technique:'other', Other:'cell distribution' SPECIMEN METADATA: LocalID:'Slc17a6_GFP_492024_200707', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'unknown', Ageunit:'Days', Sex:'Unknown', Genotype:'R26-CAG-LSL-H2B-GFP/R26-CAG-LSL-H2B-GFP; Slc17a6/Slc17a6', OrganName:'Brain', SampleLocalID:'Slc17a6_GFP_492024_200707' INSTRUMENT METADATA: MicroscopeType:'Two Photon', MicroscopeManufacturerAndModel:'TissueVision' IMAGE METADATA: xAxis:'superior-to-inferior', yAxis:'right-to-left', zAxis:'anterior-to-posterior', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'34 micron/pixel', stepSizeY:'34 micron/pixel', stepSizeZ:'83 micron/pixel'
DOI: 10.35077/jab
title: Cell type distribution in female and male mouse brains / Slc17a6_GFP_492023_200708

description: This project proposes to establish an Anatomical Collaboratory for Systematic Atlasing of Cell-Type Distribution and Morphology in female and male brain. This Collaboratory will apply standardized, unbiased and largely automated methods developed in the group’s laboratories to atlas the distribution and morphology of &gt;80 molecularly defined cell classes and cell type across all regions of the female and male brain. This work will yield the most comprehensive characterization of cell type anatomy in the mammalian brain to date, establishing a structural basis for building an integrated Cell Type Brain Atlas.
description: DATASET METADATA: title:'Cell type distribution in female and male mouse brains / Slc17a6_GFP_492023_200708', GeneralModality:'population imaging', Technique:'other', Other:'cell distribution' SPECIMEN METADATA: LocalID:'Slc17a6_GFP_492023_200708', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'unknown', Ageunit:'Days', Sex:'Unknown', Genotype:'R26-CAG-LSL-H2B-GFP/R26-CAG-LSL-H2B-GFP; Slc17a6/Slc17a6', OrganName:'Brain', SampleLocalID:'Slc17a6_GFP_492023_200708' INSTRUMENT METADATA: MicroscopeType:'Two Photon', MicroscopeManufacturerAndModel:'TissueVision' IMAGE METADATA: xAxis:'superior-to-inferior', yAxis:'right-to-left', zAxis:'anterior-to-posterior', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'35 micron/pixel', stepSizeY:'35 micron/pixel', stepSizeZ:'84 micron/pixel'
DOI: 10.35077/jam
title: Cell type distribution in female and male mouse brains / Slc17a6_GFP_513119_200712

description: This project proposes to establish an Anatomical Collaboratory for Systematic Atlasing of Cell-Type Distribution and Morphology in female and male brain. This Collaboratory will apply standardized, unbiased and largely automated methods developed in the group’s laboratories to atlas the distribution and morphology of &gt;80 molecularly defined cell classes and cell type across all regions of the female and male brain. This work will yield the most comprehensive characterization of cell type anatomy in the mammalian brain to date, establishing a structural basis for building an integrated Cell Type Brain Atlas.
description: DATASET METADATA: title:'Cell type distribution in female and male mouse brains / Slc17a6_GFP_513119_200712', GeneralModality:'population imaging', Technique:'other', Other:'cell distribution' SPECIMEN METADATA: LocalID:'Slc17a6_GFP_513119_200712', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'unknown', Ageunit:'Days', Sex:'Unknown', Genotype:'R26-CAG-LSL-H2B-GFP/R26-CAG-LSL-H2B-GFP; Slc17a6/Slc17a6', OrganName:'Brain', SampleLocalID:'Slc17a6_GFP_513119_200712' INSTRUMENT METADATA: MicroscopeType:'Two Photon', MicroscopeManufacturerAndModel:'TissueVision' IMAGE METADATA: xAxis:'superior-to-inferior', yAxis:'right-to-left', zAxis:'anterior-to-posterior', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'36 micron/pixel', stepSizeY:'36 micron/pixel', stepSizeZ:'85 micron/pixel'
DOI: 10.35077/jar
title: Cell type distribution in female and male mouse brains / Snap25_GFP_491287_200302

description: This project proposes to establish an Anatomical Collaboratory for Systematic Atlasing of Cell-Type Distribution and Morphology in female and male brain. This Collaboratory will apply standardized, unbiased and largely automated methods developed in the group’s laboratories to atlas the distribution and morphology of &gt;80 molecularly defined cell classes and cell type across all regions of the female and male brain. This work will yield the most comprehensive characterization of cell type anatomy in the mammalian brain to date, establishing a structural basis for building an integrated Cell Type Brain Atlas.
description: DATASET METADATA: title:'Cell type distribution in female and male mouse brains / Snap25_GFP_491287_200302', GeneralModality:'population imaging', Technique:'other', Other:'cell distribution' SPECIMEN METADATA: LocalID:'Snap25_GFP_491287_200302', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'unknown', Ageunit:'Days', Sex:'Unknown', Genotype:'R26-CAG-LSL-H2B-GFP/R26-CAG-LSL-H2B-GFP; Snap25/Snap25', OrganName:'Brain', SampleLocalID:'Snap25_GFP_491287_200302' INSTRUMENT METADATA: MicroscopeType:'Two Photon', MicroscopeManufacturerAndModel:'TissueVision' IMAGE METADATA: xAxis:'superior-to-inferior', yAxis:'right-to-left', zAxis:'anterior-to-posterior', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'37 micron/pixel', stepSizeY:'37 micron/pixel', stepSizeZ:'86 micron/pixel'
DOI: 10.5281/zenodo.6584767
title: Oscillatory Flow Testing Data Collected at Field Site for Research in Fractured Sedimentary Rock (FSR)^2

description: This dataset contains raw and processed pressure data collected in 2019 during oscillatory flow testing experiments at the Field Site for Research in Fractured Sedimentary Rock (FSR)^2 near Madison, WI. The included ReadMe file describes the data and code used in data processing. The companion processing and analysis code is included as a separate upload (doi:10.5281/zenodo.6584777)
DOI: 10.5281/zenodo.6584766
title: Oscillatory Flow Testing Data Collected at Field Site for Research in Fractured Sedimentary Rock (FSR)^2

description: This dataset contains raw and processed pressure data collected in 2019 during oscillatory flow testing experiments at the Field Site for Research in Fractured Sedimentary Rock (FSR)^2 near Madison, WI. The included ReadMe file describes the data and code used in data processing. The companion processing and analysis code is included as a separate upload (doi:10.5281/zenodo.6584777)
DOI: 10.35077/jaw
title: Cell type distribution in female and male mouse brains / Snap25_GFP_512647_200730

description: This project proposes to establish an Anatomical Collaboratory for Systematic Atlasing of Cell-Type Distribution and Morphology in female and male brain. This Collaboratory will apply standardized, unbiased and largely automated methods developed in the group’s laboratories to atlas the distribution and morphology of &gt;80 molecularly defined cell classes and cell type across all regions of the female and male brain. This work will yield the most comprehensive characterization of cell type anatomy in the mammalian brain to date, establishing a structural basis for building an integrated Cell Type Brain Atlas.
description: DATASET METADATA: title:'Cell type distribution in female and male mouse brains / Snap25_GFP_512647_200730', GeneralModality:'population imaging', Technique:'other', Other:'cell distribution' SPECIMEN METADATA: LocalID:'Snap25_GFP_512647_200730', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'unknown', Ageunit:'Days', Sex:'Unknown', Genotype:'R26-CAG-LSL-H2B-GFP/R26-CAG-LSL-H2B-GFP; Snap25/Snap25', OrganName:'Brain', SampleLocalID:'Snap25_GFP_512647_200730' INSTRUMENT METADATA: MicroscopeType:'Two Photon', MicroscopeManufacturerAndModel:'TissueVision' IMAGE METADATA: xAxis:'superior-to-inferior', yAxis:'right-to-left', zAxis:'anterior-to-posterior', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'38 micron/pixel', stepSizeY:'38 micron/pixel', stepSizeZ:'87 micron/pixel'
DOI: 10.35077/jet
title: Cell type distribution in female and male mouse brains / Snap25_GFP_527922_200819

description: This project proposes to establish an Anatomical Collaboratory for Systematic Atlasing of Cell-Type Distribution and Morphology in female and male brain. This Collaboratory will apply standardized, unbiased and largely automated methods developed in the group’s laboratories to atlas the distribution and morphology of &gt;80 molecularly defined cell classes and cell type across all regions of the female and male brain. This work will yield the most comprehensive characterization of cell type anatomy in the mammalian brain to date, establishing a structural basis for building an integrated Cell Type Brain Atlas.
description: DATASET METADATA: title:'Cell type distribution in female and male mouse brains / Snap25_GFP_527922_200819', GeneralModality:'population imaging', Technique:'other', Other:'cell distribution' SPECIMEN METADATA: LocalID:'Snap25_GFP_527922_200819', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'unknown', Ageunit:'Days', Sex:'Unknown', Genotype:'R26-CAG-LSL-H2B-GFP/R26-CAG-LSL-H2B-GFP; Snap25/Snap25', OrganName:'Brain', SampleLocalID:'Snap25_GFP_527922_200819' INSTRUMENT METADATA: MicroscopeType:'Two Photon', MicroscopeManufacturerAndModel:'TissueVision' IMAGE METADATA: xAxis:'superior-to-inferior', yAxis:'right-to-left', zAxis:'anterior-to-posterior', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'39 micron/pixel', stepSizeY:'39 micron/pixel', stepSizeZ:'88 micron/pixel'
DOI: 10.35077/jig
title: Cell type distribution in female and male mouse brains / TH_GFP_M1_200116

description: This project proposes to establish an Anatomical Collaboratory for Systematic Atlasing of Cell-Type Distribution and Morphology in female and male brain. This Collaboratory will apply standardized, unbiased and largely automated methods developed in the group’s laboratories to atlas the distribution and morphology of &gt;80 molecularly defined cell classes and cell type across all regions of the female and male brain. This work will yield the most comprehensive characterization of cell type anatomy in the mammalian brain to date, establishing a structural basis for building an integrated Cell Type Brain Atlas.
description: DATASET METADATA: title:'Cell type distribution in female and male mouse brains / TH_GFP_M1_200116', GeneralModality:'population imaging', Technique:'other', Other:'cell distribution' SPECIMEN METADATA: LocalID:'TH_GFP_M1_200116', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'unknown', Ageunit:'Days', Sex:'Male', Genotype:'R26-CAG-LSL-H2B-GFP/R26-CAG-LSL-H2B-GFP; TH/wt', OrganName:'Brain', SampleLocalID:'TH_GFP_M1_200116' INSTRUMENT METADATA: MicroscopeType:'Two Photon', MicroscopeManufacturerAndModel:'TissueVision' IMAGE METADATA: xAxis:'superior-to-inferior', yAxis:'right-to-left', zAxis:'anterior-to-posterior', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'40 micron/pixel', stepSizeY:'40 micron/pixel', stepSizeZ:'89 micron/pixel'
DOI: 10.35077/job
title: Cell type distribution in female and male mouse brains / TH_GFP_F2_200211

description: This project proposes to establish an Anatomical Collaboratory for Systematic Atlasing of Cell-Type Distribution and Morphology in female and male brain. This Collaboratory will apply standardized, unbiased and largely automated methods developed in the group’s laboratories to atlas the distribution and morphology of &gt;80 molecularly defined cell classes and cell type across all regions of the female and male brain. This work will yield the most comprehensive characterization of cell type anatomy in the mammalian brain to date, establishing a structural basis for building an integrated Cell Type Brain Atlas.
description: DATASET METADATA: title:'Cell type distribution in female and male mouse brains / TH_GFP_F2_200211', GeneralModality:'population imaging', Technique:'other', Other:'cell distribution' SPECIMEN METADATA: LocalID:'TH_GFP_F2_200211', Species:'Mouse', NCBITaxonomy:'NCBI:txid10090', Age:'unknown', Ageunit:'Days', Sex:'Female', Genotype:'R26-CAG-LSL-H2B-GFP/R26-CAG-LSL-H2B-GFP; TH/wt', OrganName:'Brain', SampleLocalID:'TH_GFP_F2_200211' INSTRUMENT METADATA: MicroscopeType:'Two Photon', MicroscopeManufacturerAndModel:'TissueVision' IMAGE METADATA: xAxis:'superior-to-inferior', yAxis:'right-to-left', zAxis:'anterior-to-posterior', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'41 micron/pixel', stepSizeY:'41 micron/pixel', stepSizeZ:'90 micron/pixel'
DOI: 10.5281/zenodo.6584790
title: Locomotor Adaptation Training to Prevent Mobility Disability: Dataset

description: Data for 3 groups of older adults at risk of mobility disability (1: control, 2: traditional treadmill intervention, 3: split-belt treadmill intervention) were collected at 2 timepoints 1) prior (PRE) and 2) following (POST) a 16-week intervention study. 5 dimensions of mobility disability were assessed: 1. Cognitive Function To include - Mini Mental-State Exam score (MMSE), Trail making test part A (TrailsA), Trail making test part B (TrailsB), and the difference between trail making test A & B (TMT) 2. Clinical Function To include - Short Physical Performance Battery score (SPPB), Dynamic Gait Index (DGI), Timed Up-and-Go performance (TUG) 3. Spatiotemporal Gait Parameters To include - self-selected walking speed, cadence, stride length, stride time, step width, stance time (as % gait cycle), and standard deviations of each of these variables. 4. Kinetic Gait Parameters To include - Peak plantarflexion moment, peak eccentric plantarflexor power, and peak concentric hip flexor power. 5. Cardiovascular Fitness To include - maximal oxygen uptake (VO2max), heart rate (HR), ratings of perceived exertion (RPE), and gait efficiency Data set displayed in first sheet ("Data"), description of codes provided in the second sheet ("Codes").
DOI: 10.5281/zenodo.6584789
title: Locomotor Adaptation Training to Prevent Mobility Disability: Dataset

description: Data for 3 groups of older adults at risk of mobility disability (1: control, 2: traditional treadmill intervention, 3: split-belt treadmill intervention) were collected at 2 timepoints 1) prior (PRE) and 2) following (POST) a 16-week intervention study. 5 dimensions of mobility disability were assessed: 1. Cognitive Function To include - Mini Mental-State Exam score (MMSE), Trail making test part A (TrailsA), Trail making test part B (TrailsB), and the difference between trail making test A & B (TMT) 2. Clinical Function To include - Short Physical Performance Battery score (SPPB), Dynamic Gait Index (DGI), Timed Up-and-Go performance (TUG) 3. Spatiotemporal Gait Parameters To include - self-selected walking speed, cadence, stride length, stride time, step width, stance time (as % gait cycle), and standard deviations of each of these variables. 4. Kinetic Gait Parameters To include - Peak plantarflexion moment, peak eccentric plantarflexor power, and peak concentric hip flexor power. 5. Cardiovascular Fitness To include - maximal oxygen uptake (VO2max), heart rate (HR), ratings of perceived exertion (RPE), and gait efficiency Data set displayed in first sheet ("Data"), description of codes provided in the second sheet ("Codes").
DOI: 10.5517/ccdc.csd.cc285k56
title: CCDC 2090707: Experimental Crystal Structure Determination

description: Related Article: Kseniya V. Arsenyeva, Anastasiya V. Klimashevskaya, Kira I. Pashanova, Olesya Yu. Trofimova, Maxim G. Chegerev, Alyona A. Starikova, Anton V. Cherkasov, Georgy K. Fukin, Ilya A. Yakushev, Alexandr V. Piskunov|2022|Appl.Organomet.Chem.|36|e6593|doi:10.1002/aoc.6593
DOI: 10.5517/ccdc.csd.cc28mtsj
title: CCDC 2104428: Experimental Crystal Structure Determination

description: Related Article: Lincoln Dkhar, Akalesh Kumar Verma, Venkanna Banothu, Werner Kaminsky, Mohan Rao Kollipara|2022|Appl.Organomet.Chem.|36|e6589|doi:10.1002/aoc.6589
DOI: 10.5517/ccdc.csd.cc28mttk
title: CCDC 2104429: Experimental Crystal Structure Determination

description: Related Article: Lincoln Dkhar, Akalesh Kumar Verma, Venkanna Banothu, Werner Kaminsky, Mohan Rao Kollipara|2022|Appl.Organomet.Chem.|36|e6589|doi:10.1002/aoc.6589
DOI: 10.5517/ccdc.csd.cc28mtvl
title: CCDC 2104430: Experimental Crystal Structure Determination

description: Related Article: Lincoln Dkhar, Akalesh Kumar Verma, Venkanna Banothu, Werner Kaminsky, Mohan Rao Kollipara|2022|Appl.Organomet.Chem.|36|e6589|doi:10.1002/aoc.6589
DOI: 10.5517/ccdc.csd.cc28mtwm
title: CCDC 2104431: Experimental Crystal Structure Determination

description: Related Article: Lincoln Dkhar, Akalesh Kumar Verma, Venkanna Banothu, Werner Kaminsky, Mohan Rao Kollipara|2022|Appl.Organomet.Chem.|36|e6589|doi:10.1002/aoc.6589
DOI: 10.6084/m9.figshare.19838596.v2
title: TestTM.csv

description: time sampla
DOI: 10.6084/m9.figshare.19838596.v3
title: TestTM.csv

description: time sampla