cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/r7a-el2-ggj
title: Sinezona cingulata (O. G. Costa, 1861)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n81-c1e-qby
title: Succinea putris (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/28j-sak-cr3
title: Pisidium amnicum (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2s6-753-jha
title: Abida gittenbergeri Bößneck, 2000

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.c458fx
title: Occurrence Download

description: A dataset containing 709 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Thripophaga cherriei)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 709 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002916-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/2xl-haw-xf1
title: Euglesa subtruncata (Malm, 1855)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/70k-wfe-zek
title: Euglesa casertana (Poli, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rq2-6vs-l13
title: Euglesa subtruncata (Malm, 1855)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sg2-4hs-1w6
title: Cadulus jeffreysii (Monterosato, 1875)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/crw-7yc-gxk
title: Kurtiella bidentata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f85-6dy-6ss
title: Euglesa nitida (Jenyns, 1832)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l74-ya6-10f
title: Volvulella acuminata (Bruguière, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0at-3p1-6l5
title: Pomatias elegans (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2zt-nmv-yvg
title: Mangelia paciniana (Calcara, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rk3-5mt-qq8
title: Clanculus corallinus (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kf6-tyk-d1d
title: Parvicardium exiguum (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lyk-3fc-n0y
title: Onoba aculeus (A. Gould, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0aj-8q0-l0z
title: Musculus subpictus (Cantraine, 1835)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eh4-mc6-mcv
title: Alvania colossophilus Oberling, 1970

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8r6-05s-q5z
title: Alvania sleursi (Amati, 1987)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f1g-0ls-4n3
title: Cavolinia inflexa (Lesueur, 1813)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w1v-r81-kq7
title: Alvania scabra (R. A. Philippi, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9s4-40g-nlj
title: Chrysallida indistincta (Montagu, 1808)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nr3-4hg-aw6
title: Euglesa supina (A. Schmidt, 1851)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d77-q4m-80z
title: Odostomia plicata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rpm-2ve-96a
title: Cochlostoma septemspirale septemspirale (Razoumowsky, 1789)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bxc-5df-9xe
title: Cochlostoma parnonis Schütt, 1981

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.ny77uq
title: Occurrence Download

description: A dataset containing 537 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Muscari racemosum",
 "Year 1957-2022"
 ]
}

 The dataset includes 537 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002914-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ndn-148-ql6
title: Granaria frumentum illyrica (Rossmässler, 1835)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pfk-g10-0ha
title: Eulimella Forbes & M'Andrew, 1846

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qrz-mzq-xcd
title: Xeromunda vulgarissima (Mousson, 1859)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4ep-k4j-zt5
title: Alvania tenera (R. A. Philippi, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dt2-j39-4w3
title: Caecum auriculatum de Folin, 1868

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ec5-f1l-aq7
title: Alvania discors (T. Brown, 1818)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pea-p8h-bhh
title: Pyrgiscus rufus (R. A. Philippi, 1836)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yy1-2z7-673
title: Euglesa casertana (Poli, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6fk-psp-hby
title: Monacha Fitzinger, 1833

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2hc-s0e-6fw
title: Pyrgiscus rufus (R. A. Philippi, 1836)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4ad-pyw-8mv
title: Odostomia lukisii Jeffreys, 1859

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0l6-79f-6dm
title: Alvania denhartogi Hoenselaar & Goud, 1998

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mgf-mm7-jpw
title: Hyala vitrea (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g5v-gda-1qk
title: Onoba aculeus (A. Gould, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hyq-41b-b5w
title: Barleeia unifasciata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dfd-7w0-67p
title: Chauvetia crassior (Odhner, 1932)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qyr-s87-trm
title: Hyala vitrea (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wjg-bxp-06p
title: Caecum clarkii P. P. Carpenter, 1859

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lsg-9qv-n0s
title: Parthenina emaciata (Brusina, 1866)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y67-rrh-y9j
title: Pyrgostylus striatulus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vcc-5g1-8za
title: Alvania lineata Risso, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6gs-6mt-ga6
title: Epilepton clarkiae (W. Clark, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9tq-d5h-1aw
title: Rissoa ventricosa Desmarest, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/41p-y7y-laq
title: Alvania macandrewi (Manzoni, 1868)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lsw-at3-2zb
title: Morum oniscus (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6ka-6bt-5ry
title: Skeneopsis sultanarum Gofas, 1983

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/awv-g6f-qp6
title: Helicodonta obvoluta dentata (Westerlund, 1876)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/53y-y62-hda
title: Obtusella intersecta (S. V. Wood, 1857)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j4m-7c4-3l0
title: Alvania subsoluta (Aradas, 1847)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2xl-qxn-9e5
title: Hydrobia glyca (Servain, 1880)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dbc-9z3-787
title: Vitreolina curva (Monterosato, 1874)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wgn-tv3-r3n
title: Abra alba (W. Wood, 1802)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.ak6n6b
title: Occurrence Download

description: A dataset containing 27985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Pyracantha coccinea"
 ]
}

 The dataset includes 27985 records from 538 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002912-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1gm-n82-jel
title: Ondina warreni (W. Thompson, 1845)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pd8-jr4-vd4
title: Parthenina interstincta (J. Adams, 1797)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/phj-5sv-ye2
title: Potamopyrgus antipodarum (J. E. Gray, 1843)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ym2-jv1-byq
title: Mangelia costata (Pennant, 1777)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p7r-zj1-lqt
title: Tricolia tingitana Gofas, 1982

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pmv-2me-ha1
title: Parthenina monozona (Brusina, 1869)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3y5-cnj-l8v
title: Rissoa violacea Desmarest, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rv2-h0v-l3d
title: Peringiella elegans (Locard, 1891)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v67-0zj-prm
title: Skeneopsis planorbis (O. Fabricius, 1780)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qsv-jn3-80s
title: Rissoidae Gray, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w0q-nnl-qsw
title: Pusillina inconspicua (Alder, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9rr-75m-5a2
title: Gyraulus rossmaessleri (Auerswald, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ht6-kkn-eaf
title: Sinezona cingulata (O. G. Costa, 1861)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4q0-fjx-ykg
title: Abida secale saxicola (Moquin-Tandon, 1843)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b4h-hay-mw8
title: Onoba semicostata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hay-8et-mq2
title: Petricolaria pholadiformis (Lamarck, 1818)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1z7-46h-rsk
title: Retusa T. Brown, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rg5-cwk-m9l
title: Chrysallida fenestrata (Jeffreys, 1848)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/apf-bzd-sll
title: Euglesa casertana (Poli, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zmx-j6r-hnn
title: Crisilla semistriata (Montagu, 1808)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lzx-q3c-jjr
title: Parthenina decussata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tls-abl-385
title: Monacha cantiana (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n0y-8f4-lbh
title: Rissoa variabilis (Megerle von Mühlfeld, 1824)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z4k-b8w-hrk
title: Pirenella cingulata (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16793937
title: AkiraSMori/BiodProd-ForRestore: Analyses for "From theory to restoration: Quantifying diversity effects on productivity in naturally assembled tree communities"

description: Abstract

Understanding how biodiversity sustains ecosystem functioning is fundamental both in theory and practice, particularly in the context of primary productivity, which underpins many forms of life and ecosystem processes such as carbon sequestration. Using an extensive dataset from Japan’s National Forest Inventory—spanning over two decades and 6.4 million tree measurements across subtropical to hemiboreal forests—we examined the relationship between tree diversity and aboveground biomass productivity (AGBP) in natural forests. We found that species richness positively influences AGBP, primarily through the positive complementarity effect, with marginal contributions from the negative selection effect. By integrating broad-scale environmental niche dissimilarity and local-scale functional differentiation in light of the metacommunity theory, we quantified diversity effects and predicted productivity outcomes under forest restoration scenarios. Our models suggest that enhancing tree diversity in unmanaged, abandoned plantations could enhance aboveground biomass productivity up to 7.6 times compared to the current baseline. This evidence underscores the irreplaceable value of naturally-assembled communities and highlights the necessity of species-explicit practices, as failing to consider species composition may limit ecosystem function recovery. Our study provides critical insights for biodiversity-based climate solutions and sustainable forest management policies.
DOI: 10.5281/zenodo.16810679
title: AkiraSMori/BiodProd-ForRestore: Analyses for "From theory to restoration: Quantifying diversity effects on productivity in naturally assembled tree communities"

description: Abstract

Understanding how biodiversity sustains ecosystem functioning is fundamental both in theory and practice, particularly in the context of primary productivity, which underpins many forms of life and ecosystem processes such as carbon sequestration. Using an extensive dataset from Japan’s National Forest Inventory—spanning over two decades and 6.4 million tree measurements across subtropical to hemiboreal forests—we examined the relationship between tree diversity and aboveground biomass productivity (AGBP) in natural forests. We found that species richness positively influences AGBP, primarily through the positive complementarity effect, with marginal contributions from the negative selection effect. By integrating broad-scale environmental niche dissimilarity and local-scale functional differentiation in light of the metacommunity theory, we quantified diversity effects and predicted productivity outcomes under forest restoration scenarios. Our models suggest that enhancing tree diversity in unmanaged, abandoned plantations could enhance aboveground biomass productivity up to 7.6 times compared to the current baseline. This evidence underscores the irreplaceable value of naturally-assembled communities and highlights the necessity of species-explicit practices, as failing to consider species composition may limit ecosystem function recovery. Our study provides critical insights for biodiversity-based climate solutions and sustainable forest management policies.
DOI: 10.3535/2yq-81t-q0v
title: Homalopoma sanguineum (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ac7-xw7-6xt
title: Setia subvaricosa Gofas, 1990

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qbt-zbz-r33
title: Skeneopsis planorbis (O. Fabricius, 1780)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4xy-mnv-djw
title: Pusillina inconspicua (Alder, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/07z-l16-7lx
title: Obtusella intersecta (S. V. Wood, 1857)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qcc-vhn-51j
title: Pisidium amnicum (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cv4-f3l-tp8
title: Parthenina emaciata (Brusina, 1866)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mm8-ee9-2x5
title: Donax vittatus (da Costa, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lez-hgs-zvv
title: Lyromangelia taeniata (Deshayes, 1835)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m6e-psa-kbt
title: Odostomia unidentata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vtp-mvb-wl5
title: Velutina J. Fleming, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/btg-e6c-ec0
title: Alvania pagodula (Bucquoy, Dautzenberg & Dollfus, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7pb-g4f-jft
title: Alvania discors (T. Brown, 1818)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nsy-4lg-9f1
title: Alvania subcrenulata (Bucquoy, Dautzenberg & Dollfus, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t6p-67h-3j0
title: Chamelea gallina (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.26180/28845728
title: Judgment attribution in Law

description: This work applies Machine Learning techniques to attribute authorship of legal judgments.
DOI: 10.26180/28845728.v1
title: Judgment attribution in Law

description: This work applies Machine Learning techniques to attribute authorship of legal judgments.
DOI: 10.15468/dl.xnuur2
title: Occurrence Download

description: A dataset containing 128645 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudotsuga menziesii (Mirb.) Franco"
 ]
}

 The dataset includes 128645 records from 1075 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012252-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13321089
title: Phase-contrast time-lapses of seven bacterial species growing in microfluidic mother machine traps

description: This dataset and software accompany the article "Rapid label-free identification of seven bacterial species using microfluidics, single-cell time-lapse phase-contrast microscopy, and deep learning-based image and video classification" for reproducing the results.

In the study, deep-learning models are trained to classify phase-contrast videos (time-lapses) of bacteria growing in microfluidic chip traps. The dataset consists of lab isolates of the species Pseudomonas aeruginosa, Escherichia coli, Klebsiella pneumoniae, Acinetobacter baumannii, Enterococcus faecalis, Proteus mirabilis, and Staphylococcus aureus. The video clips have around 30 frames each, captured during one hour of growth (2 minutes between each frame). The whole dataset consists of around 620,000 images from 19,500 traps.

Additionally, the package contains software to re-run the experiments, generate output metrics, and build the graphs in the article.
DOI: 10.5281/zenodo.15287740
title: Phase-contrast time-lapses of seven bacterial species growing in microfluidic mother machine traps

description: This dataset and software accompany the article "Rapid label-free identification of seven bacterial species using microfluidics, single-cell time-lapse phase-contrast microscopy, and deep learning-based image and video classification" for reproducing the results.

In the study, deep-learning models are trained to classify phase-contrast videos (time-lapses) of bacteria growing in microfluidic chip traps. The dataset consists of lab isolates of the species Pseudomonas aeruginosa, Escherichia coli, Klebsiella pneumoniae, Acinetobacter baumannii, Enterococcus faecalis, Proteus mirabilis, and Staphylococcus aureus. The video clips have around 30 frames each, captured during one hour of growth (2 minutes between each frame). The whole dataset consists of around 620,000 images from 19,500 traps.

Additionally, the package contains software to re-run the experiments, generate output metrics, and build the graphs in the article.
DOI: 10.5281/zenodo.15288026
title: KESERVA QO'LLASHGA KO'RSATMALAR VA MUVAFFAQIYATLI REABILITATSIYA
DOI: 10.5281/zenodo.15288027
title: KESERVA QO'LLASHGA KO'RSATMALAR VA MUVAFFAQIYATLI REABILITATSIYA