cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17171/1-3-1064-19
title: BDIA4297
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1064-2
title: BDIA4297
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1064-22
title: BDIA4297
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1064-7
title: BDIA4297
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1065-10
title: BDIA4298
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1065-13
title: BDIA4298
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1065-15
title: BDIA4298
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1065-16
title: BDIA4298
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1065-17
title: BDIA4298
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1065-18
title: BDIA4298
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1065-2
title: BDIA4298
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1065-20
title: BDIA4298
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1065-21
title: BDIA4298
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1065-22
title: BDIA4298
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1065-24
title: BDIA4298
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.17171/1-3-1065-3
title: BDIA4298
title: lunar motion from JPL data

description: created with Wolfram Mathematica Version 10.0
description: Babylonian Diaries
DOI: 10.6084/m9.figshare.23751977
title: Additional file 13 of Pilot clinical trial and phenotypic analysis in chemotherapy-pretreated, metastatic triple-negative breast cancer patients treated with oral TAK-228 and TAK-117 (PIKTOR) to increase DNA damage repair deficiency followed by cisplatin and nab paclitaxel

description: Supplementary Material 13
DOI: 10.6084/m9.figshare.23751977.v1
title: Additional file 13 of Pilot clinical trial and phenotypic analysis in chemotherapy-pretreated, metastatic triple-negative breast cancer patients treated with oral TAK-228 and TAK-117 (PIKTOR) to increase DNA damage repair deficiency followed by cisplatin and nab paclitaxel

description: Supplementary Material 13
DOI: 10.6084/m9.figshare.23751980
title: Additional file 14 of Pilot clinical trial and phenotypic analysis in chemotherapy-pretreated, metastatic triple-negative breast cancer patients treated with oral TAK-228 and TAK-117 (PIKTOR) to increase DNA damage repair deficiency followed by cisplatin and nab paclitaxel

description: Supplementary Material 14
DOI: 10.6084/m9.figshare.23751980.v1
title: Additional file 14 of Pilot clinical trial and phenotypic analysis in chemotherapy-pretreated, metastatic triple-negative breast cancer patients treated with oral TAK-228 and TAK-117 (PIKTOR) to increase DNA damage repair deficiency followed by cisplatin and nab paclitaxel

description: Supplementary Material 14
DOI: 10.6084/m9.figshare.23751986
title: Additional file 16 of Pilot clinical trial and phenotypic analysis in chemotherapy-pretreated, metastatic triple-negative breast cancer patients treated with oral TAK-228 and TAK-117 (PIKTOR) to increase DNA damage repair deficiency followed by cisplatin and nab paclitaxel

description: Supplementary Material 16
DOI: 10.6084/m9.figshare.23751986.v1
title: Additional file 16 of Pilot clinical trial and phenotypic analysis in chemotherapy-pretreated, metastatic triple-negative breast cancer patients treated with oral TAK-228 and TAK-117 (PIKTOR) to increase DNA damage repair deficiency followed by cisplatin and nab paclitaxel

description: Supplementary Material 16
DOI: 10.6084/m9.figshare.23751989
title: Additional file 17 of Pilot clinical trial and phenotypic analysis in chemotherapy-pretreated, metastatic triple-negative breast cancer patients treated with oral TAK-228 and TAK-117 (PIKTOR) to increase DNA damage repair deficiency followed by cisplatin and nab paclitaxel

description: Supplementary Material 17
DOI: 10.6084/m9.figshare.23751989.v1
title: Additional file 17 of Pilot clinical trial and phenotypic analysis in chemotherapy-pretreated, metastatic triple-negative breast cancer patients treated with oral TAK-228 and TAK-117 (PIKTOR) to increase DNA damage repair deficiency followed by cisplatin and nab paclitaxel

description: Supplementary Material 17
DOI: 10.6084/m9.figshare.23751976
title: Additional file 2 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

description: Additional file 2. Summary of the quality of the sequencing data in this study (lncRNAs and circRNAs). Raw reads: statistics of raw sequence data. Clean reads: sequencing data after conditional filtering. Clean bases: the number of sequenced sequences is multiplied by the length of the sequence and converted to G units. Error rate: average base sequencing error rate. Q20, Q30: calculate the percentage of bases with phred values greater than 20 and 30 in the total bases, respectively. GC content: the sum of the number of bases G and C as a percentage of the total number of bases.
DOI: 10.6084/m9.figshare.23751976.v1
title: Additional file 2 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

description: Additional file 2. Summary of the quality of the sequencing data in this study (lncRNAs and circRNAs). Raw reads: statistics of raw sequence data. Clean reads: sequencing data after conditional filtering. Clean bases: the number of sequenced sequences is multiplied by the length of the sequence and converted to G units. Error rate: average base sequencing error rate. Q20, Q30: calculate the percentage of bases with phred values greater than 20 and 30 in the total bases, respectively. GC content: the sum of the number of bases G and C as a percentage of the total number of bases.
DOI: 10.6084/m9.figshare.23751982
title: Additional file 3 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

description: Additional file 3. Results of circRNA and miRNA binding site analysis. Sheet 1: miRNA target gene prediction. Target gene prediction was performed on the known and novel miRNAs obtained by the analysis, and the corresponding relationship between miRNAs and target genes was obtained. Sheet 2: Analysis results of miRNA and circRNA binding sites. The miRNA and circRNA sequences were matched, and the thermal stability and sequence conservation of the double-stranded were analyzed. The first column is the miRNA ID, the second column is the circRNA ID, the third column is the total score value of all binding sites predicted by targeting relationship (the higher the value, the higher the possibility of targeting the set), the fourth column is the total energy value (the lower the energy value, the higher the energy required to disassemble the miRNA-circRNA interaction, and the more stable the binding. That is, the target-binding relationship of the energy value is more reliable), the fifth column is the target binding to all binding sites, and the highest score is in the middle (higher value indicates a higher probability of targeting ensemble); the sixth column is the lowest energy value among all binding sites for targeted binding, the seventh column is Strand, the eighth column is miRNA length, the ninth column is circRNA length, and the tenth column is the combination position. If multiple positions can be combined, the multiple positions are separated by spaces.
DOI: 10.6084/m9.figshare.23751982.v1
title: Additional file 3 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

description: Additional file 3. Results of circRNA and miRNA binding site analysis. Sheet 1: miRNA target gene prediction. Target gene prediction was performed on the known and novel miRNAs obtained by the analysis, and the corresponding relationship between miRNAs and target genes was obtained. Sheet 2: Analysis results of miRNA and circRNA binding sites. The miRNA and circRNA sequences were matched, and the thermal stability and sequence conservation of the double-stranded were analyzed. The first column is the miRNA ID, the second column is the circRNA ID, the third column is the total score value of all binding sites predicted by targeting relationship (the higher the value, the higher the possibility of targeting the set), the fourth column is the total energy value (the lower the energy value, the higher the energy required to disassemble the miRNA-circRNA interaction, and the more stable the binding. That is, the target-binding relationship of the energy value is more reliable), the fifth column is the target binding to all binding sites, and the highest score is in the middle (higher value indicates a higher probability of targeting ensemble); the sixth column is the lowest energy value among all binding sites for targeted binding, the seventh column is Strand, the eighth column is miRNA length, the ninth column is circRNA length, and the tenth column is the combination position. If multiple positions can be combined, the multiple positions are separated by spaces.
DOI: 10.6084/m9.figshare.23751985
title: Additional file 4 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

description: Additional file 4. Expressional data of all the RNAs and their feature information obtained in this study. Sheet 1: The detailed information of the spliced transcripts and the partial transcripts of the known lncRNAs with overlaps in the database can be divided into intergenic lncRNAs (lincRNAs for short), intronic lncRNAs, anti-sense lncRNAs, and sense lncRNAs according to their positional relationship with the coding sequences, bidirectional lncRNA and other types. Sheet 2: Details of the novel_lncRNA screened this study. Sheet 3: Detailed property information of the mRNA of their species. Sheet 4: Annotation files of all identified circRNAs (chr: chromosome number, start: start site of full-length circRNA, end: termination site of full-length circRNA, strand: positive and negative strands, full_length: full-length circRNA, spliced_length: length of circRNA after shearing). Sheet 5: miRNA differential expression analysis results (sRNA: miRNA mature body id).
DOI: 10.6084/m9.figshare.23751985.v1
title: Additional file 4 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

description: Additional file 4. Expressional data of all the RNAs and their feature information obtained in this study. Sheet 1: The detailed information of the spliced transcripts and the partial transcripts of the known lncRNAs with overlaps in the database can be divided into intergenic lncRNAs (lincRNAs for short), intronic lncRNAs, anti-sense lncRNAs, and sense lncRNAs according to their positional relationship with the coding sequences, bidirectional lncRNA and other types. Sheet 2: Details of the novel_lncRNA screened this study. Sheet 3: Detailed property information of the mRNA of their species. Sheet 4: Annotation files of all identified circRNAs (chr: chromosome number, start: start site of full-length circRNA, end: termination site of full-length circRNA, strand: positive and negative strands, full_length: full-length circRNA, spliced_length: length of circRNA after shearing). Sheet 5: miRNA differential expression analysis results (sRNA: miRNA mature body id).
DOI: 10.6084/m9.figshare.23751988
title: Additional file 5 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

description: Additional file 5. Information on lncRNAs and target mRNAs. Co_located: position-related target gene analysis, cis target gene prediction is performed based on the positional relationship between lncRNA and mRNA, and the screening range is within 100 k. Co_expressed: target gene expression correlation analysis, target gene prediction is performed based on the expression correlation between lncRNA and mRNA, and the screening condition is that the correlation coefficient is greater than 0.95.
DOI: 10.6084/m9.figshare.23751988.v1
title: Additional file 5 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

description: Additional file 5. Information on lncRNAs and target mRNAs. Co_located: position-related target gene analysis, cis target gene prediction is performed based on the positional relationship between lncRNA and mRNA, and the screening range is within 100 k. Co_expressed: target gene expression correlation analysis, target gene prediction is performed based on the expression correlation between lncRNA and mRNA, and the screening condition is that the correlation coefficient is greater than 0.95.
DOI: 10.6084/m9.figshare.23752003
title: Additional file 10 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

description: Additional file 10. The lncRNA-miRNA-mRNA and circRNA-miRNA-mRNA regulatory networks constructed in this study.
DOI: 10.6084/m9.figshare.23752003.v1
title: Additional file 10 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

description: Additional file 10. The lncRNA-miRNA-mRNA and circRNA-miRNA-mRNA regulatory networks constructed in this study.
DOI: 10.6084/m9.figshare.23752006
title: Additional file 11 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

description: Additional file 11. The mRNA, lncRNA and circRNA of MEmediumpurple2, MEsteelblue, MEdarkviolet and MEorangered3 modules that significantly associated with T. gondii infection.
DOI: 10.6084/m9.figshare.23752006.v1
title: Additional file 11 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

description: Additional file 11. The mRNA, lncRNA and circRNA of MEmediumpurple2, MEsteelblue, MEdarkviolet and MEorangered3 modules that significantly associated with T. gondii infection.
DOI: 10.6084/m9.figshare.23672649.v1
title: Additional file 2 of Exploring differentially expressed genes of Staphylococcus aureus exposed to human tonsillar cells using RNA sequencing

description: Supplementary Material 2
DOI: 10.5281/zenodo.7906975
title: College Student's Academic Help-Seeking Behavior: A Systematic Review

description: The CCAT User Guide provides detailed explanations and references for how each category item can be scored.
description: D2-2 ,D ,VILLA TROPIKA, JLN JINMA 5,TMN BUKIT SERDANG,SEKSYEN 4, SERI KEMBANGAN 43300 SELANGOR
DOI: 10.5281/zenodo.7906974
title: College Student's Academic Help-Seeking Behavior: A Systematic Review

description: The CCAT User Guide provides detailed explanations and references for how each category item can be scored.
description: D2-2 ,D ,VILLA TROPIKA, JLN JINMA 5,TMN BUKIT SERDANG,SEKSYEN 4, SERI KEMBANGAN 43300 SELANGOR
DOI: 10.5281/zenodo.8086117
title: College Student's Academic Help-Seeking Behavior: A Systematic Review

description: The CCAT User Guide provides detailed explanations and references for how each category item can be scored.
description: D2-2 ,D ,VILLA TROPIKA, JLN JINMA 5,TMN BUKIT SERDANG,SEKSYEN 4, SERI KEMBANGAN 43300 SELANGOR
DOI: 10.5281/zenodo.8185340
title: College Student's Academic Help-Seeking Behavior: A Systematic Review

description: The CCAT User Guide provides detailed explanations and references for how each category item can be scored.
description: D2-2 ,D ,VILLA TROPIKA, JLN JINMA 5,TMN BUKIT SERDANG,SEKSYEN 4, SERI KEMBANGAN 43300 SELANGOR
DOI: 10.5281/zenodo.8185342
title: Negligible fractionation between fluorine and chlorine during magma ocean crystallization and implications for the origin of Earth's volatiles

description: Research data underlying all figures in the main text and supplementary material .
DOI: 10.5281/zenodo.8185341
title: Negligible fractionation between fluorine and chlorine during magma ocean crystallization and implications for the origin of Earth's volatiles

description: Research data underlying all figures in the main text and supplementary material .
DOI: 10.6084/m9.figshare.23634468.v1
title: result.xls

description: This data is the collection of measurements of subcortical nuclei of brain in MRI of brains.
DOI: 10.6084/m9.figshare.23634468.v2
title: result.xls

description: This data is the collection of measurements of subcortical nuclei of brain in MRI of brains.
DOI: 10.6084/m9.figshare.23752482
title: Experimental data from Dunn et al. (1996) and Kubrak et al. (2008) and Jinjin Li (2023)

description: The experimental data are collected from Dunn et al. (1996) , Kubrak et al. (2008) and Jinjin Li et al.(2023)
DOI: 10.6084/m9.figshare.23752482.v1
title: Experimental data from Dunn et al. (1996) and Kubrak et al. (2008) and Jinjin Li (2023)

description: The experimental data are collected from Dunn et al. (1996) , Kubrak et al. (2008) and Jinjin Li et al.(2023)
DOI: 10.5281/zenodo.8150515
title: CePNEM model analysis data and ANTSUN and microscopy neural network weights

description: <strong>Citation and publication</strong> To cite this work or access the publication, please use the citation information listed here: https://github.com/flavell-lab/AtanasKim-Cell2023/tree/main#citation Initially published as preprint in: Brain-wide representations of behavior spanning multiple timescales and states in C. elegans <strong>Adam A. Atanas*</strong>, <strong>Jungsoo Kim*</strong>, Ziyu Wang, Eric Bueno, McCoy Becker, Di Kang, Jungyeon Park, Cassi Estrem, Talya S. Kramer, Saba Baskoylu, Vikash K. Mansingkha, Steven W. Flavell<br> bioRxiv 2022.11.11.516186; doi: https://doi.org/10.1101/2022.11.11.516186 * Equal Contribution <strong>Contents</strong> 1. deepnet-weights.tar.bz2 contains the trained weights of the neural networks used in this project. 3dunet_540nm_voxels: 3D U-Net for segmenting neurons head_detector_unet: finding worm head landmark used in ANTSUN registration head_detector_unet_0622: an alternative version of the above, optimal for NeuroPAL datasets microscope_tracker: detecting keypoints for online tracking on the microscope behavior_nir: segmentation of the recorded NIR behavior images for behavior quantification 2. data files ANTSUN processed datasets and CePNEM processed model fits and analysis data. Check the project packages and notebooks in the project github repository (https://github.com/flavell-lab/AtanasKim-Cell2023/) on using these datasets.
DOI: 10.5281/zenodo.8150514
title: CePNEM model analysis data and ANTSUN and microscopy neural network weights

description: <strong>Citation and publication</strong> To cite this work or access the publication, please use the citation information listed here: https://github.com/flavell-lab/AtanasKim-Cell2023/tree/main#citation Initially published as preprint in: Brain-wide representations of behavior spanning multiple timescales and states in C. elegans <strong>Adam A. Atanas*</strong>, <strong>Jungsoo Kim*</strong>, Ziyu Wang, Eric Bueno, McCoy Becker, Di Kang, Jungyeon Park, Cassi Estrem, Talya S. Kramer, Saba Baskoylu, Vikash K. Mansingkha, Steven W. Flavell<br> bioRxiv 2022.11.11.516186; doi: https://doi.org/10.1101/2022.11.11.516186 * Equal Contribution <strong>Contents</strong> 1. deepnet-weights.tar.bz2 contains the trained weights of the neural networks used in this project. 3dunet_540nm_voxels: 3D U-Net for segmenting neurons head_detector_unet: finding worm head landmark used in ANTSUN registration head_detector_unet_0622: an alternative version of the above, optimal for NeuroPAL datasets microscope_tracker: detecting keypoints for online tracking on the microscope behavior_nir: segmentation of the recorded NIR behavior images for behavior quantification 2. data files ANTSUN processed datasets and CePNEM processed model fits and analysis data. Check the project packages and notebooks in the project github repository (https://github.com/flavell-lab/AtanasKim-Cell2023/) on using these datasets.
DOI: 10.5281/zenodo.8185377
title: CePNEM model analysis data and ANTSUN and microscopy neural network weights

description: <strong>Citation and publication</strong> To cite this work or access the publication, please use the citation information listed here: https://github.com/flavell-lab/AtanasKim-Cell2023/tree/main#citation Initially published as preprint in: Brain-wide representations of behavior spanning multiple timescales and states in C. elegans <strong>Adam A. Atanas*</strong>, <strong>Jungsoo Kim*</strong>, Ziyu Wang, Eric Bueno, McCoy Becker, Di Kang, Jungyeon Park, Cassi Estrem, Talya S. Kramer, Saba Baskoylu, Vikash K. Mansingkha, Steven W. Flavell<br> bioRxiv 2022.11.11.516186; doi: https://doi.org/10.1101/2022.11.11.516186 * Equal Contribution <strong>Contents</strong> 1. deepnet-weights.tar.bz2 contains the trained weights of the neural networks used in this project. 3dunet_540nm_voxels: 3D U-Net for segmenting neurons head_detector_unet: finding worm head landmark used in ANTSUN registration head_detector_unet_0622: an alternative version of the above, optimal for NeuroPAL datasets microscope_tracker: detecting keypoints for online tracking on the microscope behavior_nir: segmentation of the recorded NIR behavior images for behavior quantification 2. data files ANTSUN processed datasets and CePNEM processed model fits and analysis data. Check the project packages and notebooks in the project github repository (https://github.com/flavell-lab/AtanasKim-Cell2023/) on using these datasets.
DOI: 10.6084/m9.figshare.23752749
title: Signatures of a magnetic superstructure phase induced by ultrahigh magnetic fields in a breathing pyrochlore antiferromagnet

description: Dataset related to our paper "Signatures of a magnetic superstructure phase induced by ultrahigh magnetic fields in a breathing pyrochlore antiferromagnet" accepted in PNAS journal are presented.
DOI: 10.6084/m9.figshare.23732454
title: G003_SupplementaryData1.xlsx

description: Dataset and statistical analysis for the paper "Modified Levey-Jennings Chart with Robust Estimator: A Case of Semiconductor Manufacturing Process" submitted to ICoAIMS 2023: 4th International Conference on Applied & Industrial Mathematics and Statistics 2023.
DOI: 10.6084/m9.figshare.23732454.v2
title: G003_SupplementaryData1.xlsx

description: Dataset and statistical analysis for the paper "Modified Levey-Jennings Chart with Robust Estimator: A Case of Semiconductor Manufacturing Process" submitted to ICoAIMS 2023: 4th International Conference on Applied & Industrial Mathematics and Statistics 2023.