cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/szjs9j
title: A new species of the genus Trimeresurus Lacépède, 1804 (Squamata, Viperidae) from western Sichuan Province, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cai, Bo, Gou, Yubo, Wang, Gang, Liu, Fengjing, Liang, Dong, Gu, Xiaodong, Gu, Haijun, Fang, Haolong, Liu, Yuzhou, Li, Qiujie, Ding, Li (2026): A new species of the genus Trimeresurus Lacépède, 1804 (Squamata, Viperidae) from western Sichuan Province, China. Zoosystematics and Evolution 102 (1): 285-302, DOI: 10.3897/zse.102.178601AbstractThe genus Trimeresurus Lacépède comprises over 57 species, with recent taxonomic revisions recognizing six subgenera. Despite extensive research, many regions in China remain understudied, particularly the biodiversity-rich West China Rain Zone. This study reports a new pitviper species from western Sichuan Province, China, based on comprehensive morphological and molecular analyses. Specimens collected from the West China Rain Zone were examined using detailed morphological comparisons and phylogenetic analyses of three mitochondrial genes (16 S, cytb, and ND 4). The results show that this population, together with T. loong, forms a distinct monophyletic clade within the subgenus Viridovipera Malhotra & Thorpe, with uncorrected genetic distances to its closest relatives exceeding 6.50 % (cytb) and 5.77 % (ND 4). Diagnostic morphological differences, including smooth cephalic scales, a postocular streak extending beyond the 2 nd supralabial in males, dorsal scale rows of 21–21 – 15, and a grass-green body color lacking bands or markings, further support its taxonomic distinctness. We propose the new species Trimeresurus lii sp. nov., which represents the second species of Viridovipera in Sichuan Province and the 58 th species of Trimeresurus worldwide, and contributes to understanding biodiversity in the Giant Panda National Park region. This discovery highlights the importance of continued field surveys in biodiversity hotspots for documenting and conserving unique faunal assemblages.
DOI: 10.15468/dl.j3arru
title: Occurrence Download

description: A dataset containing 8025 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Material citation, Specimen)",
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rivulidae"
 ]
}

 The dataset includes 8025 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002569-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00012577.0
title: Available datapackage for study 'Improved Scalability, Sensitivity, and Interpretability of Pathogen Detection, Including SARS-CoV-2, in Wastewater using High-Throughput, Highly Multiplexed Digital Array PCR Technology'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5281/zenodo.18435641
title: ASSETS_D2.3_UNED_Castilla-LeonTranscriptions

description: This dataset contains fully anonymised interview transcripts collected for Deliverable 2.3 of the ASSETS project within Work Package 2.3, contributing to the qualitative phase of the project and informing Deliverable 2.5. The qualitative phase aims to capture nuanced insights and lived experiences related to the political, regulatory, and labour landscape of the social economy across European regions.

The transcripts derive from semi-structured qualitative interviews conducted in Castilla y León (Spain) with a diverse group of social economy stakeholders, including representatives of social and solidarity economy organisations and networks, public administration staff, political actors, university-based and non-academic researchers, employees of intermediary organisations, and members of social movements.

The interviews explore regional social economy ecosystems, existing legal and policy frameworks, institutional arrangements, labour conditions, and perceived barriers and enabling factors affecting the development, sustainability, and scaling of social economy initiatives.

All transcripts have been fully anonymised in accordance with ethical requirements and data protection regulations. This dataset supports the qualitative analysis reported in Deliverable 2.3 and contributes to a comparative understanding of social economy governance, policy design, and labour conditions across territorial contexts. It is shared to enhance transparency, reusability, and future research on institutional ecosystems and enabling environments for the social economy.
DOI: 10.5281/zenodo.18435642
title: ASSETS_D2.3_UNED_Castilla-LeonTranscriptions

description: This dataset contains fully anonymised interview transcripts collected for Deliverable 2.3 of the ASSETS project within Work Package 2.3, contributing to the qualitative phase of the project and informing Deliverable 2.5. The qualitative phase aims to capture nuanced insights and lived experiences related to the political, regulatory, and labour landscape of the social economy across European regions.

The transcripts derive from semi-structured qualitative interviews conducted in Castilla y León (Spain) with a diverse group of social economy stakeholders, including representatives of social and solidarity economy organisations and networks, public administration staff, political actors, university-based and non-academic researchers, employees of intermediary organisations, and members of social movements.

The interviews explore regional social economy ecosystems, existing legal and policy frameworks, institutional arrangements, labour conditions, and perceived barriers and enabling factors affecting the development, sustainability, and scaling of social economy initiatives.

All transcripts have been fully anonymised in accordance with ethical requirements and data protection regulations. This dataset supports the qualitative analysis reported in Deliverable 2.3 and contributes to a comparative understanding of social economy governance, policy design, and labour conditions across territorial contexts. It is shared to enhance transparency, reusability, and future research on institutional ecosystems and enabling environments for the social economy.
DOI: 10.15468/dl.vmx66f
title: Occurrence Download

description: A dataset containing 408 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Porthidium yucatanicum"
 ]
}

 The dataset includes 408 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002570-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6rbut
title: Occurrence Download

description: A dataset containing 26563094 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "DecimalLatitude is greater than or equal to 41",
 "DecimalLatitude is less than 42",
 "DecimalLongitude is greater than or equal to -71",
 "DecimalLongitude is less than 70",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 26563094 records from 2631 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002555-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.vhhmgqnxj
title: Phytoplankton assemblage shifts with dissolved organic matter properties: a functional perspective for sentinel lakes

description: 1. Climate change is altering both dissolved organic matter (DOM)
 properties and phytoplankton dynamics in lakes. High-altitude lakes are
 good sentinels of global change. However, their value as sentinels depends
 on how well we understand their functioning. This study analyzed physical,
 chemical, and biological data during three pre-defined periods running
 from complete ice-cover right to the end of the ice-free season, in a
 high-altitude oligotrophic lake. A functional approach was used to assess
 how relationships between DOM and the planktonic community vary over time.
 2. Phytoplankton functional change was found to occur with shifts in
 dissolved organic matter. During the ice-influenced period, from February
 to the end of the thaw, the phytoplankton community was dominated by small
 autotrophs and mixotrophic flagellates and DOM from sediment and
 terrestrial origin dominated the DOM pool of the lake. Phytoplankton
 diversity and richness increased during the post-snowmelt overturn period,
 when terrestrial DOM dominated the DOM pool. Finally, large siliceous
 autotrophs, competitive under low nitrogen concentrations and high
 temperature, dominated almost exclusively during the late summer period.
 Increased phytoplankton biomass meant that phytoplankton-derived DOM was
 dominant during the late summer period. 3. These phenological changes in
 the phytoplankton community resulted in functional shifts at the base of
 the food web. Based on the relationships between the variables in the
 study, it can be deduced that the nature of the relationship between
 phytoplankton and bacteria progressively shifted from strong top-down
 control exerted by phytoplankton over bacteria toward predominantly
 bottom-up control at the end of the ice-free season. 4. Synthesis. Using a
 field survey starting from complete ice-cover and lasting right to the end
 of the ice-free season in a sentinel lake, we show seasonal shifts in the
 link between dissolved organic matter properties and plankton community
 traits. Differences in environmental conditions and DOM origin explained
 variation in phytoplankton community structure and function, pointing to
 seasonal shifts in microbial food web interactions. Our research suggests
 that, under climate change, the balance between mixotrophy and autotrophy
 and the control exerted by phytoplankton over bacterioplankton will change
 in oligotrophic high-altitude lakes with large, vegetated
 catchments.
DOI: 10.5061/dryad.76hdr7t11
title: A three-photon head-mounted microscope for imaging all layers of visual cortex in freely moving mice

description: Recent advances in head-mounted microscopes have enabled imaging of
 neuronal activity using genetic tools in freely moving mice but these
 microscopes are restricted to recording in minimally lit arenas and
 imaging upper cortical layers. Here we built a 2-gram, three-photon
 excitation-based microscope, containing a z-drive that enabled access to
 all cortical layers while mice freely behaved in a fully lit environment.
 The microscope had onboard photon detectors, robust to environmental
 light, and the arena lighting was timed to the end of each line scan,
 enabling functional imaging of activity from cortical layer 4 and layer 6
 neurons expressing jGCaMP7f in mice roaming a fully lit or dark arena. By
 comparing the neuronal activity measured from populations in these layers
 we show that activity in cortical layer-4 and layer-6 is differentially
 modulated by lit and dark conditions during free exploration.
description: The data in this repository was collected using the 3-photon
 head-mounted microscope that we present here and a calibrated setup of
 overhead cameras, tracking a set of head-mounted LEDs for accurate
 position and attitude data of the animal's head. We present raw data
 from the microscope and processed microscope (frame registration,
 denoising) and head tracking (led detection and fitting of a head-led
 stage model) data.
description: Raw data from the microscopes is included in multipage TIF format
 as written by ScanImage software. Multipage TIF images can be opened with
 many tools, e.g. ImageJ. We have further included the
 post-processed data (frame registration, denoising) used in the figures in
 the main manuscript and the software for reproducing said figures. A
 detailed description of each figure is included in the README.txt
 file.
DOI: 10.15468/dl.ayrze3
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Uzbekistan",
 "TaxonKey is Calligonum"
 ]
}

 The dataset includes 191 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003297-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.qz612jmk4
title: Data for: Transplant experiments demonstrate that larger brains are favored in high competition environments in Trinidadian killifish

description: The extent to which the evolution of a larger brain is adaptive remains
 controversial. Trinidadian killifish (Anablepsoides hartii) are found in
 sites that differ in predation intensity; fish that experience decreased
 predation and increased intraspecific competition exhibit larger brains.
 We evaluated the connection between brain size and fitness (survival and
 growth) when killifish are found in their native habitats and when fish
 are transplanted from sites with predators to high-competition sites that
 lack predators. Selection for a larger brain was absent within locally
 adapted populations. Conversely, there was a strong positive relationship
 between brain size and growth in transplanted but not resident fish in
 high-competition environments. We also observed significantly larger brain
 sizes in the transplanted fish that were recaptured at the end of the
 experiment versus those that were not. Our results provide experimental
 support that larger brains increase fitness and are favored in
 high-competition environments.
description: The files include the data for the comparative mark-recapture
 experiments and the transplant experiment described in the manuscript. The
 data for the comparative mark recapture expeirment tabs associated with
 the analyses of growth and survval. The file for the transplant experiment
 inlcudes the data associated with the growth rate analyses. 
description: Data can be accessed using SPSS.
DOI: 10.5061/dryad.p2ngf1vtw
title: Datasets for: Colony-nesting gulls restrict activity levels of native top carnivore during the breeding season

description: Although nesting in colonies can offer substantial reproductive benefits
 for many seabird species, increased visibility to predators remains a
 significant disadvantage for most colony-breeders. To counteract this,
 some seabird species have evolved aggressive nest defense strategies to
 protect vulnerable eggs and chicks. Here we used an experimental approach
 to test whether colony inhabitance by breeding gulls (Larus spp.) in
 western Norway impacts visitation rates of a native, mammalian predator,
 the Eurasian otter (Lutra lutra) during the breeding season. Camera traps
 were placed inside of and on the periphery of seabird colonies prior to
 the breeding season and left to run for one continuous year. Sighting
 frequency of otters on these cameras was compared to a control region free
 of gull nesting. We found that otter activity was significantly reduced on
 the colonies when gulls were incubating and rearing chicks, compared to
 time periods when gulls were building nests and absent from the colonies.
 Rhythmic activity patterns did not seem to be significantly impacted by
 the presence of gulls. This study provides clear evidence that certain
 colony-nesting species can have a direct, negative impact on visitation
 rates of a native carnivore. Seasonal carnivore activity patterns are
 likely to be highly dependent on differing nesting strategies and level of
 nest defense by seabirds.
DOI: 10.5061/dryad.sbcc2fr9s
title: Lateral gene transfer generates accessory genes that accumulate at different rates within a grass lineage

description: Lateral gene transfer (LGT) is the movement of DNA between organism
 without sexual reproduction. The acquired genes represent genetic
 novelties that have independently evolved in the donor’s genome.
 Phylogenetic methods have shown that LGT is widespread across the entire
 grass family, although we know little about the underlying dynamics. We
 identify laterally acquired genes in five de novo reference genomes from
 the same grass genus (four Alloteropsis semialata and one Alloteropsis
 angusta). Using additional resequencing data for a further 40 Alloteropsis
 individuals, we place the acquisition of each gene onto a phylogeny using
 stochastic character mapping, and then infer rates of gains and losses. We
 detect 168 laterally acquired genes in the five reference genomes [32-100
 per genome]. Exponential decay models indicate that the rate of LGT
 acquisitions [6-28 per Ma] and subsequent losses [11-24% per Ma] varied
 significantly among lineages. Laterally acquired genes were lost at a
 higher rate than vertically inherited loci [0.02-0.8% per Ma]. This high
 turnover creates intraspecific gene content variation, with a
 preponderance of them occurring as accessory genes in the Alloteropsis
 pangenome. This rapid turnover generates standing variation that can
 ultimately fuel local adaptation.
description:  Nucleotide alignments, Maximum likelihood phylogenetic trees, genome assemblies and annotations. Please see manuscript for full details.
description: three zipped files: [1] Alignments.zip Fasta file alignments for candidate
 lateral gene transfers (LGTs) identified in Alloteropsis genomes. these
 are divided into Primary (n=108) and Secondary (n=71) depending on how
 they were identified (please see publication for further details) [2]
 Phylogenetic\_trees.zip These are maximum likelihood phylogenetic trees
 inferred from alignments (also uploaded) for candidate LGTs. Again,
 divided into Primary (n=108) and Secondary (n=71) depending on how they
 were identified (please see publication for further details) [3] Assembly
 and annotation This includes 10 files, genome assembly (.fasta/.fa) and
 annotations (.gff) for five Alloteropsis accessions: AANG\_UGA4 AUS1
 RSA5-3 TAN1-04B ZAM1505-10 (for full assembly methods please see
 publication)
DOI: 10.5061/dryad.j6q573nhp
title: Adaptive effects of parental and developmental environments on offspring survival, growth, and phenotype

description: Phenotypic adjustments to environmental variation are particularly
 relevant to cope with putative environmental mismatches often imposed by
 natal dispersal. We used an inter-generational cross-transplant
 field-based experiment to evaluate the morphological and physiological
 effects of parental and post-settlement water flow environments on the
 orange-fin anemonefish Amphiprion chrysopterus through ontogeny (at pre-
 and post-settlement stages). Offspring born from parents under high water
 flow had an 18% higher caudal fin aspect ratio (a compound measure of
 shape) at the pre-settlement stage, 10% slower growth after settlement,
 and 55% lower survival after settlement compared to offspring from
 low-water-flow parents. At the pre-settlement stage, caudal fin length was
 determined by parental caudal fin length. At the post-settlement stage,
 fish survived equally well with similar phenotypes in both high- and
 low-developmental-flow environments. However, results suggest potential
 developmental phenotypic plasticity in caudal fin length, which increases
 more under low water flow during development. After settlement growth was
 the only morphological or physiological trait that was associated with
 parental water flow, which was lower from parents under high flow, as was
 survival. These results give important insights into the parental
 contribution, both genetic and non-genetic, in determining early offspring
 phenotype and subsequent growth and survival. Our results also suggest
 that offspring may possess the flexibility to cope with a wide range of
 local environments including those different from their parents. Overall,
 the findings of this study show the fitness consequences of living in
 different environments and the likely trade-offs between parental and
 offspring fitness in a wild population.
DOI: 10.5061/dryad.59zw3r2bs
title: Data from: The effect of individual state on the strength of mate choice in females and males

description: Animals are thought to gain significant fitness benefits from choosing
 high-quality or compatible mates. However, there is a large within-species
 variation in how choosy individuals are during mating. This may be because
 the costs and benefits of being choosy vary according to an individual’s
 state. To test this, I systematically searched for published data relating
 the strength of animal mate choice in both sexes to individual age,
 attractiveness, body size, physical condition, mating status, and parasite
 load. I performed a meta-analysis of 108 studies and 78 animal species to
 quantify how the strength of mate choice varies according to individual
 state. In line with the predictions of sexual selection theory, I find
 that females are significantly choosier when they are large and have a low
 parasite load, thus supporting the premise that the expression of female
 mate choice is dependent on the costs and benefits of being choosy.
 However, the female choice was not influenced by female age,
 attractiveness, physical condition, or mating status. Attractive males
 were significantly choosier than unattractive males, but male mate choice
 was not influenced by male age, body size, physical condition, mating
 status, or parasite load. However, this data set was limited by a small
 sample size, and the overall correlation between individual states and the
 strength of mate choice was similar for both sexes. Nevertheless, in both
 males and females individual states explained only a small amount of
 variation in the strength of mate choice.
description: # The effect of individual state on the strength of mate choice in females
 and males
 [https://doi.org/10.5061/dryad.59zw3r2bs](https://doi.org/10.5061/dryad.59zw3r2bs) ## Description of the data and file structure I performed a meta-analysis of 108 studies and 78 animal species to quantify how the strength of mate choice varies according to individual state. Studies were identified from an earlier systematic literature search produced by: "Dougherty (2021) Meta-analysis shows the evidence for context-dependent mating behaviour is inconsistent or weak across animals. Ecol Lett. 24: 862– 875." I then extracted data comparing mate chouce in relation to one of six state factors: age, attractiveness, body size, physical condition, mating status, and parasite load. ### Files and variables #### File: choosy\_tree\_edited.tre **Description:** supertree showing the phylogenetic relationships between the species in the data set. #### File: Dougherty\_\_2022\_All\_data.xlsx **Description:** data file containing all data needed to recreate the meta-analysis. There is a tab with variable definitions ## Code/software All analyses were performed using R v4.0.3 (R Development Core Team 2020) using the packages metafor v2.4 (Viechtbauer 2010) and orchaRd (Nakagawa et al. 2021). R script file is included.