cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4396343
title: Toward a Physics based Model of Hypervelocity dust Impacts,

description: Data used in the preparations of certain figures of the manuscript
DOI: 10.5281/zenodo.4396340
title: Toward a Physics based Model of Hypervelocity dust Impacts,

description: Data used in the preparations of certain figures of the manuscript
DOI: 10.6084/m9.figshare.13498199
title: Supplementary data 4 from Electrostatic resistance to alpha-neurotoxins conferred by charge reversal mutations in nicotinic acetylcholine receptors

description: Raw data - Atractaspis resistance structure-activity relationships
DOI: 10.6084/m9.figshare.13498202
title: Supplementary data 2 from Electrostatic resistance to alpha-neurotoxins conferred by charge reversal mutations in nicotinic acetylcholine receptors

description: Raw data - Python bivitattus resistance structure-activity relationships
DOI: 10.6084/m9.figshare.13498202.v1
title: Supplementary data 2 from Electrostatic resistance to alpha-neurotoxins conferred by charge reversal mutations in nicotinic acetylcholine receptors

description: Raw data - Python bivitattus resistance structure-activity relationships
DOI: 10.6084/m9.figshare.13498205.v1
title: Supplementary data 1 from Electrostatic resistance to alpha-neurotoxins conferred by charge reversal mutations in nicotinic acetylcholine receptors

description: Raw data - Honey badger resistance structure-activity relationships
DOI: 10.6084/m9.figshare.13498205
title: Supplementary data 1 from Electrostatic resistance to alpha-neurotoxins conferred by charge reversal mutations in nicotinic acetylcholine receptors

description: Raw data - Honey badger resistance structure-activity relationships
DOI: 10.6084/m9.figshare.13498208
title: Supplementary data 3 from Electrostatic resistance to alpha-neurotoxins conferred by charge reversal mutations in nicotinic acetylcholine receptors

description: Raw data - Pseudaspis cana resistance structure-activity relationships
DOI: 10.6084/m9.figshare.13498208.v1
title: Supplementary data 3 from Electrostatic resistance to alpha-neurotoxins conferred by charge reversal mutations in nicotinic acetylcholine receptors

description: Raw data - Pseudaspis cana resistance structure-activity relationships
DOI: 10.6084/m9.figshare.13498213.v1
title: Raw data from Individual recognition is associated with holistic face processing in <i>Polistes</i> paper wasps in a species-specific way

description: Most recognition is based on identifying features, but specialization for face recognition in primates relies on a different mechanism, termed ‘holistic processing’ where facial features are bound together into a gestalt which is more than the sum of its parts. Here, we test whether individual face recognition in paper wasps also involved holistic processing using a modification of the classic part-whole test in two related paper wasp species: <i>Polistes fuscatus</i>, which use facial patterns to individually identify conspecifics, and <i>Polistes dominula</i>, which lacks individual recognition. We show that <i>P. fuscatus</i> use holistic processing to discriminate between <i>P. fuscatus</i> face images but not <i>P. dominula</i> face images. By contrast, <i>P. dominula</i> do not rely on holistic processing to discriminate between conspecific or heterospecific face images. Therefore, <i>P. fuscatus</i> wasps have evolved holistic face processing, but this ability is highly specific and shaped by species-specific and stimuli-specific selective pressures. Convergence toward holistic face processing in distant taxa (primates, wasps) as well as divergence among closely related taxa with different recognition behaviour (<i>P. dominula</i>, <i>P. fuscatus</i>) suggests that holistic processing may be a universal adaptive strategy to facilitate expertize in face recognition.
DOI: 10.6084/m9.figshare.13498213
title: Raw data from Individual recognition is associated with holistic face processing in <i>Polistes</i> paper wasps in a species-specific way

description: Most recognition is based on identifying features, but specialization for face recognition in primates relies on a different mechanism, termed ‘holistic processing’ where facial features are bound together into a gestalt which is more than the sum of its parts. Here, we test whether individual face recognition in paper wasps also involved holistic processing using a modification of the classic part-whole test in two related paper wasp species: <i>Polistes fuscatus</i>, which use facial patterns to individually identify conspecifics, and <i>Polistes dominula</i>, which lacks individual recognition. We show that <i>P. fuscatus</i> use holistic processing to discriminate between <i>P. fuscatus</i> face images but not <i>P. dominula</i> face images. By contrast, <i>P. dominula</i> do not rely on holistic processing to discriminate between conspecific or heterospecific face images. Therefore, <i>P. fuscatus</i> wasps have evolved holistic face processing, but this ability is highly specific and shaped by species-specific and stimuli-specific selective pressures. Convergence toward holistic face processing in distant taxa (primates, wasps) as well as divergence among closely related taxa with different recognition behaviour (<i>P. dominula</i>, <i>P. fuscatus</i>) suggests that holistic processing may be a universal adaptive strategy to facilitate expertize in face recognition.
DOI: 10.6084/m9.figshare.13498228.v1
title: Table S1. The numbers of males, females, and dead individuals, and sex ratios and mortalities in all experimental generations and crossing-lines from Silence of the killers: discovery of male-killing suppression in a rearing strain of the small brown planthopper, <i>Laodelphax striatellus</i>

description: According to evolutionary theory, sex ratio distortions caused by reproductive parasites such as <i>Wolbachia</i> and <i>Spiroplasma</i> are predicted to be rapidly normalized by the emergence of host nuclear suppressors. However, such processes in the evolutionary arms race are difficult to observe because sex ratio biases will be promptly hidden and become superficially unrecognizable. The evolution of genetic suppressors has been reported in just two insect species so far. In the small brown planthopper, <i>Laodelphax striatellus</i>, female-biases caused by <i>Spiroplasma</i>, which is a ‘late’ male-killer, have been found in some populations. During the continuous rearing of <i>L. striatellus</i>, we noted that a rearing strain had a 1 : 1 sex ratio even though it harboured <i>Spiroplasma</i>. Through introgression crossing experiments with a strain lacking suppressors, we revealed that the <i>L. striatellus</i> strain had the zygotic male-killing suppressor acting as a dominant trait. The male-killing phenotype was hidden by the suppressor even though <i>Spiroplasma</i> retained its male-killing ability. This is the first study to demonstrate the existence of a late male-killing suppressor and its mode of inheritance. Our results, together with those of previous studies, suggest that the inheritance modes of male-killing suppressors are similar regardless of insect order or early or late male killing.
DOI: 10.6084/m9.figshare.13498228
title: Table S1. The numbers of males, females, and dead individuals, and sex ratios and mortalities in all experimental generations and crossing-lines from Silence of the killers: discovery of male-killing suppression in a rearing strain of the small brown planthopper, <i>Laodelphax striatellus</i>

description: According to evolutionary theory, sex ratio distortions caused by reproductive parasites such as <i>Wolbachia</i> and <i>Spiroplasma</i> are predicted to be rapidly normalized by the emergence of host nuclear suppressors. However, such processes in the evolutionary arms race are difficult to observe because sex ratio biases will be promptly hidden and become superficially unrecognizable. The evolution of genetic suppressors has been reported in just two insect species so far. In the small brown planthopper, <i>Laodelphax striatellus</i>, female-biases caused by <i>Spiroplasma</i>, which is a ‘late’ male-killer, have been found in some populations. During the continuous rearing of <i>L. striatellus</i>, we noted that a rearing strain had a 1 : 1 sex ratio even though it harboured <i>Spiroplasma</i>. Through introgression crossing experiments with a strain lacking suppressors, we revealed that the <i>L. striatellus</i> strain had the zygotic male-killing suppressor acting as a dominant trait. The male-killing phenotype was hidden by the suppressor even though <i>Spiroplasma</i> retained its male-killing ability. This is the first study to demonstrate the existence of a late male-killing suppressor and its mode of inheritance. Our results, together with those of previous studies, suggest that the inheritance modes of male-killing suppressors are similar regardless of insect order or early or late male killing.
DOI: 10.17632/thwhd33tsj.1
title: Data for: Gas composition and carbon isotopic variation during shale gas desorption: implication from the Ordovician Wufeng Formation-Silurian Longmaxi Formation in west Hubei, China

description: Table 1. A comprehensive table for the fundamental geochemical information of Wufeng-Longmaxi Formation shale and testing results of the shale desorbed gases Table 2. Geochemical characteristics of shale gas released in the desorption experiments of the Wufeng-Longmaxi Formation shale of Well EFD1
DOI: 10.17632/d5wkzybkxc.1
title: Data for: Heterogeneous Information Fusion Based on Hybrid Distribution of Probability/Possibility and Its Application in Target Recognition

description: An example of target recognition using ESM data, to compare the classic Bayesian classifier with a fuzzy classifier with heterogeneous information fusion.
DOI: 10.6084/m9.figshare.13498231.v1
title: Motility data collated from the literature and classified as prokaryotes, flagellates, ciliates, and amoeboid. (In particular please see references 346-348.) from Origins of eukaryotic excitability

description: All living cells interact dynamically with a constantly changing world. Eukaryotes, in particular, evolved radically new ways to sense and react to their environment. These advances enabled new and more complex forms of cellular behaviour in eukaryotes, including directional movement, active feeding, mating, or responses to predation. But what are the key events and innovations during eukaryogenesis that made all of this possible? Here we describe the ancestral repertoire of eukaryotic excitability and discuss five major cellular innovations that enabled its evolutionary origin. The innovations include a vastly expanded repertoire of ion channels, the emergence of cilia and pseudopodia, endomembranes as intracellular capacitors, a flexible plasma membrane and the relocation of chemiosmotic ATP synthesis to mitochondria that liberated the plasma membrane for more complex electrical signalling involved in sensing and reacting. We conjecture that together with an increase in cell size, these new forms of excitability greatly amplified the degrees of freedom associated with cellular responses, allowing eukaryotes to vastly outperform prokaryotes in terms of both speed and accuracy. This comprehensive new perspective on the evolution of excitability enriches our view of eukaryogenesis and emphasizes behaviour and sensing as major contributors to the success of eukaryotes.This article is part of the theme issue ‘Basal cognition: conceptual tools and the view from the single cell’.
DOI: 10.6084/m9.figshare.13498231
title: Motility data collated from the literature and classified as prokaryotes, flagellates, ciliates, and amoeboid. (In particular please see references 346-348.) from Origins of eukaryotic excitability

description: All living cells interact dynamically with a constantly changing world. Eukaryotes, in particular, evolved radically new ways to sense and react to their environment. These advances enabled new and more complex forms of cellular behaviour in eukaryotes, including directional movement, active feeding, mating, or responses to predation. But what are the key events and innovations during eukaryogenesis that made all of this possible? Here we describe the ancestral repertoire of eukaryotic excitability and discuss five major cellular innovations that enabled its evolutionary origin. The innovations include a vastly expanded repertoire of ion channels, the emergence of cilia and pseudopodia, endomembranes as intracellular capacitors, a flexible plasma membrane and the relocation of chemiosmotic ATP synthesis to mitochondria that liberated the plasma membrane for more complex electrical signalling involved in sensing and reacting. We conjecture that together with an increase in cell size, these new forms of excitability greatly amplified the degrees of freedom associated with cellular responses, allowing eukaryotes to vastly outperform prokaryotes in terms of both speed and accuracy. This comprehensive new perspective on the evolution of excitability enriches our view of eukaryogenesis and emphasizes behaviour and sensing as major contributors to the success of eukaryotes.This article is part of the theme issue ‘Basal cognition: conceptual tools and the view from the single cell’.
DOI: 10.6084/m9.figshare.13498238
title: Supplementary table 1: Protein accession numbers and domain composition of neurosecretory proteins from Choanoflagellates and the ancestry of neurosecretory vesicles

description: Neurosecretory vesicles are highly specialized trafficking organelles that store neurotransmitters which are released at pre-synaptic nerve endings and are, therefore, important for animal cell–cell signalling. Despite considerable anatomical and functional diversity of neurons in animals, the protein composition of neurosecretory vesicles in bilaterians appears to be similar. This similarity points towards a common evolutionary origin. Moreover, many putative homologues of key neurosecretory vesicle proteins predate the origin of the first neurons, and some even the origin of the first animals. However, little is known about the molecular toolkit of these vesicles in non-bilaterian animals and their closest unicellular relatives, making inferences about the evolutionary origin of neurosecretory vesicles extremely difficult. By comparing 28 proteins of the core neurosecretory vesicle proteome in 13 different species, we demonstrate that most of the proteins are present in unicellular organisms. Surprisingly, we find that the vesicular membrane-associated soluble N-ethylmaleimide-sensitive factor attachment protein receptor protein synaptobrevin is localized to the vesicle-rich apical and basal pole in the choanoflagellate <i>Salpingoeca rosetta.</i> Our 3D vesicle reconstructions reveal that the choanoflagellates <i>S. rosetta</i> and <i>Monosiga brevicollis</i> exhibit a polarized and diverse vesicular landscape reminiscent to the polarized organization of chemical synapses that secrete the content of neurosecretory vesicles into the synaptic cleft. This study sheds light on the ancestral molecular machinery of neurosecretory vesicles and provides a framework to understand the origin and evolution of secretory cells, synapses and neurons.This article is part of the theme issue ‘Basal cognition: multicellularity, neurons and the cognitive lens’.
DOI: 10.6084/m9.figshare.13498238.v1
title: Supplementary table 1: Protein accession numbers and domain composition of neurosecretory proteins from Choanoflagellates and the ancestry of neurosecretory vesicles

description: Neurosecretory vesicles are highly specialized trafficking organelles that store neurotransmitters which are released at pre-synaptic nerve endings and are, therefore, important for animal cell–cell signalling. Despite considerable anatomical and functional diversity of neurons in animals, the protein composition of neurosecretory vesicles in bilaterians appears to be similar. This similarity points towards a common evolutionary origin. Moreover, many putative homologues of key neurosecretory vesicle proteins predate the origin of the first neurons, and some even the origin of the first animals. However, little is known about the molecular toolkit of these vesicles in non-bilaterian animals and their closest unicellular relatives, making inferences about the evolutionary origin of neurosecretory vesicles extremely difficult. By comparing 28 proteins of the core neurosecretory vesicle proteome in 13 different species, we demonstrate that most of the proteins are present in unicellular organisms. Surprisingly, we find that the vesicular membrane-associated soluble N-ethylmaleimide-sensitive factor attachment protein receptor protein synaptobrevin is localized to the vesicle-rich apical and basal pole in the choanoflagellate <i>Salpingoeca rosetta.</i> Our 3D vesicle reconstructions reveal that the choanoflagellates <i>S. rosetta</i> and <i>Monosiga brevicollis</i> exhibit a polarized and diverse vesicular landscape reminiscent to the polarized organization of chemical synapses that secrete the content of neurosecretory vesicles into the synaptic cleft. This study sheds light on the ancestral molecular machinery of neurosecretory vesicles and provides a framework to understand the origin and evolution of secretory cells, synapses and neurons.This article is part of the theme issue ‘Basal cognition: multicellularity, neurons and the cognitive lens’.
DOI: 10.6084/m9.figshare.13498244
title: Supplementary table 2: Vesicle diameters measured in a cell of Salpingoeca rosetta and Monosiga brevicollis. from Choanoflagellates and the ancestry of neurosecretory vesicles

description: Neurosecretory vesicles are highly specialized trafficking organelles that store neurotransmitters which are released at pre-synaptic nerve endings and are, therefore, important for animal cell–cell signalling. Despite considerable anatomical and functional diversity of neurons in animals, the protein composition of neurosecretory vesicles in bilaterians appears to be similar. This similarity points towards a common evolutionary origin. Moreover, many putative homologues of key neurosecretory vesicle proteins predate the origin of the first neurons, and some even the origin of the first animals. However, little is known about the molecular toolkit of these vesicles in non-bilaterian animals and their closest unicellular relatives, making inferences about the evolutionary origin of neurosecretory vesicles extremely difficult. By comparing 28 proteins of the core neurosecretory vesicle proteome in 13 different species, we demonstrate that most of the proteins are present in unicellular organisms. Surprisingly, we find that the vesicular membrane-associated soluble N-ethylmaleimide-sensitive factor attachment protein receptor protein synaptobrevin is localized to the vesicle-rich apical and basal pole in the choanoflagellate <i>Salpingoeca rosetta.</i> Our 3D vesicle reconstructions reveal that the choanoflagellates <i>S. rosetta</i> and <i>Monosiga brevicollis</i> exhibit a polarized and diverse vesicular landscape reminiscent to the polarized organization of chemical synapses that secrete the content of neurosecretory vesicles into the synaptic cleft. This study sheds light on the ancestral molecular machinery of neurosecretory vesicles and provides a framework to understand the origin and evolution of secretory cells, synapses and neurons.This article is part of the theme issue ‘Basal cognition: multicellularity, neurons and the cognitive lens’.
DOI: 10.6084/m9.figshare.13498244.v1
title: Supplementary table 2: Vesicle diameters measured in a cell of Salpingoeca rosetta and Monosiga brevicollis. from Choanoflagellates and the ancestry of neurosecretory vesicles

description: Neurosecretory vesicles are highly specialized trafficking organelles that store neurotransmitters which are released at pre-synaptic nerve endings and are, therefore, important for animal cell–cell signalling. Despite considerable anatomical and functional diversity of neurons in animals, the protein composition of neurosecretory vesicles in bilaterians appears to be similar. This similarity points towards a common evolutionary origin. Moreover, many putative homologues of key neurosecretory vesicle proteins predate the origin of the first neurons, and some even the origin of the first animals. However, little is known about the molecular toolkit of these vesicles in non-bilaterian animals and their closest unicellular relatives, making inferences about the evolutionary origin of neurosecretory vesicles extremely difficult. By comparing 28 proteins of the core neurosecretory vesicle proteome in 13 different species, we demonstrate that most of the proteins are present in unicellular organisms. Surprisingly, we find that the vesicular membrane-associated soluble N-ethylmaleimide-sensitive factor attachment protein receptor protein synaptobrevin is localized to the vesicle-rich apical and basal pole in the choanoflagellate <i>Salpingoeca rosetta.</i> Our 3D vesicle reconstructions reveal that the choanoflagellates <i>S. rosetta</i> and <i>Monosiga brevicollis</i> exhibit a polarized and diverse vesicular landscape reminiscent to the polarized organization of chemical synapses that secrete the content of neurosecretory vesicles into the synaptic cleft. This study sheds light on the ancestral molecular machinery of neurosecretory vesicles and provides a framework to understand the origin and evolution of secretory cells, synapses and neurons.This article is part of the theme issue ‘Basal cognition: multicellularity, neurons and the cognitive lens’.
DOI: 10.25345/c53j5v
title: MassIVE MSV000086642 - Region Specific Mouse Brain N-glycomic
title: Cell surface N-glycomic analysis of select functional mouse brain areas including forebrain, hindbrain, cortex, hippocampus, and cerebellum.
DOI: 10.6084/m9.figshare.13498290
title: Cytokine, NO and cell surface markers data.xlsx

description: Cytokine, NO and Cell surface markers analysis data in Macrophages and Dendritic cells stimulated with the Leishmania donovani antigen
DOI: 10.6084/m9.figshare.13498290.v1
title: Cytokine, NO and cell surface markers data.xlsx

description: Cytokine, NO and Cell surface markers analysis data in Macrophages and Dendritic cells stimulated with the Leishmania donovani antigen
DOI: 10.17632/mcgvnnmf78.1
title: Supporting Information for SPARC: Simulation Package for Ab-initio Real-space Calculations

description: SPARC is a highly accurate and efficient code for performing real-space Kohn-Sham Density Functional Theory (DFT) simulations. The dataset here corresponds to the examples and tests studied in the paper titled "SPARC: Simulation Package for Ab-initio Real-space Calculations".
DOI: 10.17632/bmrshnf3g2.1
title: Transversal Connectivity Index (TCI) for measuring the effectiveness of urban Blue-green infrastructure

description: This model introduces the Transversal Connectivity Index (TCI) as an ecological indicator for classifying the natural landscape patches by their effective transversal connectivity to the water surfaces. The method applies specifically to urban areas at which the quality of blue-green infrastructure (BGI) is of fundamental importance in reducing the climate change consequences. Effective transversal connectivity among the BGI at the metropolitan scale supplies various ecosystem services in support of nature-based solutions for emerging urban challenges. The TCI value is computed (determined) by integrating a variety of existing and novel landscape indicators into an equation. The connectivity indicators belong to two categories: the intra-patch consists of the isoperimetric quotient , and patch ecological indicator , and the inter-patch ones listed as the band level , the shared border ratio , and the transport fragmentation buffer . (The Processing Modeler- QGIS, will be available up to request|)
DOI: 10.6084/m9.figshare.13498299.v1
title: qiime2_workflow.txt

description: Workflow of QIIME2
DOI: 10.6084/m9.figshare.13498299
title: qiime2_workflow.txt

description: Workflow of QIIME2