cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e244682v1
title: Global dataset of nutritional value, economic value, and climate vulnerability for species-specific recreational fisheries harvest for consumption (ver. 1.2, January 2026)

description: These data are nutrition, economic value, and climate vulnerability of inland recreational consumption by country. The dietary contribution is measured as calcium, omega-3 long-chain polyunsaturated fatty acids docosahexaenoic acid and eicosapentaenoic acid (hereafter referred as DHA+EPA), iron, protein, vitamin B12, and zinc supply. The economic contribution is measured as total consumptive use value [TCUV]). The climate vulnerability follows Nyboer et al. 2021, comparing four climate change scenarios. Related External Resources: https://communities.springernature.com/posts/recreational-inland-fishing-for-fun-and-food (Recreational Inland Fishing for Fun AND Food )
description: (Downloaded 2026-01-26)
DOI: 10.5061/dryad.qk770
title: Data from: Recolonization after habitat restoration leads to decreased genetic variation in populations of a terrestrial orchid

description: Colonization is crucial to habitat restoration projects that rely on the
 spontaneous regeneration of the original vegetation. However, as a
 previously declining plant species spreads again, the likelihood of
 founder effects increases through recurrent population founding and
 associated serial bottlenecks. We related AFLP genetic variation and
 fitness of all extant populations of the outcrossing terrestrial orchid
 Dactylorhiza incarnata in an isolated coastal dune complex to colonization
 history. Around 1970, D. incarnata suffered a severe bottleneck yet
 eventually persisted and gradually spread throughout the spatially
 segregated dune slacks, aided by the restoration of an open vegetation.
 Genetic assignment demonstrated dispersal to vacant sites from few nearby
 extant populations and very limited inflow from outside the spatially
 isolated reserve. Results further indicated that recurrent founding from
 few local sources resulted in the loss of genetic diversity and promoted
 genetic divergence (FST=0.35) among populations, but did not influence
 population fitness. The few local sources initially available and the
 little gene inflow from outside the study reserve, as a consequence of
 respectively habitat degradation and spatial isolation, possibly magnified
 the genetic effects of recurrent population founding.
description: AFLPdataVandepitteetal2012Genotype data based on Amplified fragment length Polymorphism (AFLP) of the ms entitled "Recolonization after habitat restoration leads to decreased genetic variation in populations of a terrestrial orchid" by Vandepitte et al. accepted in 2012 by Molecular Ecology. Rows 2-272: each line is the AFLP genotype of a separate Dactylorhiza incarnata plant, individuals are labeled according to the number of their population (=sampling location) of origin Table 1 in the publication. Column 1: Population ID; Column 2-92: AFLP loci, 1 decodes the presence of a band, 0 the absence.
DOI: 10.5061/dryad.gr0sb
title: Data from: Systematics and diversification of Anindobothrium Marques, Brooks & Lasso, 2001 (Eucestoda: Rhinebothriidea)

description: Tapeworms of the genus Anindobothrium Marques, Brooks & Lasso,
 2001 are found in both marine and Neotropical freshwater stingrays of the
 family Potamotrygonidae. The patterns of host association within the genus
 support the most recent hypothesis about the history of diversification of
 potamotrygonids, which suggests that the ancestor of freshwater lineages
 of the Potamotrygonidae colonized South American river systems through
 marine incursion events. Despite the relevance of the genus Anindobothrium
 to understand the history of colonization and diversification of
 potamotrygonids, no additional efforts were done to better investigate the
 phylogenetic relationship of this taxon with other lineages of cestodes
 since its erection. This study is a result of recent collecting efforts to
 sample members of the genus in marine and freshwater potamotrygonids that
 enabled the most extensive documentation of the fauna of Anindobothrium
 parasitizing species of Styracura de Carvalho, Loboda & da Silva,
 Potamotrygon schroederi Fernández-Yépez, P. orbignyi (Castelnau) and P.
 yepezi Castex & Castello from six different countries,
 representing the eastern Pacific Ocean, Caribbean Sea, and river basins in
 South America (Rio Negro, Orinoco, and Maracaibo). The newly collected
 material provided additional specimens for morphological studies and
 molecular samples for subsequent phylogenetic analyses that allowed us to
 address the phylogenetic position of Anindobothrium and provide molecular
 and morphological evidence to recognize two additional species for the
 genus. The taxonomic actions that followed our analyses included the
 proposition of a new family, Anindobothriidae fam. n., to accommodate the
 genus Anindobothrium in the order Rhinebothriidea Healy, Caira, Jensen,
 Webster & Littlewood, 2009 and the description of two new species
 — one from the eastern Pacific Ocean, A. carrioni sp. n., and the other
 from the Caribbean Sea, A. inexpectatum sp. n. In addition, we also
 present a redescription of the type species of the genus, A. anacolum
 (Brooks, 1977) Marques, Brooks & Lasso, 2001, and of A. lisae
 Marques, Brooks & Lasso, 2001. We also discuss the
 paleogeographical events mostly linked with the diversification of the
 genus and the protocols adopted to uncover cryptic diversity in
 Anindobothrium.
description: supplementary
 dataThis zipped directory
 contains NEXUS files and tree files from which nucleotide diagnoses were
 computed, and morphometric data and R script for PCA and LDA
 analyses.supplementary_data.zip
DOI: 10.5061/dryad.001g4
title: Data from: Cold adaptation drives variability in needle structure and anatomy in Pinus sylvestris L. along a 1,900 km temperate–boreal transect

description: 1. Occupancy of cold habitats by evergreen species requires structural
 modification of photosynthetic organs for stress resistance and longevity.
 Such modifications have been described at inter-specific level while
 intra-specific variation has been underexplored. 2. To identify structural
 and anatomical traits that may be adaptive in cold environments, we
 studied intra-specific variability of needles of Scots pine (Pinus
 sylvestris L.), a wide-ranging tree, along a 1900 km temperate-boreal
 transect in Europe. 3. Needles from 20 sites representing mean minimum
 winter temperatures between -4.0°C and -19.9°C and mean annual
 temperatures between 8.3°C and -1.7°C were sampled for measurements of
 leaf mass per area (LMA, g m-2), leaf density (LD, g cm-3) and 30 other
 morpho-anatomical traits. 4. Needles from cold sites lived longer, were
 shorter, showed higher LMA and LD, had narrower and more
 collapse-resistant tracheids, thicker epidermal cells with thicker cell
 walls, and wider resin ducts occupying larger fraction of needle volume in
 comparison to needles from warmer sites. 5. Along the steep climatic
 gradient, needles presented a coordinated phenotypic spectrum of external
 and internal traits that are largely interpretable in functional, adaptive
 terms. This intra-specific pattern of co-varying traits provides insight
 into the adaptive syndrome associated with stress tolerance and extended
 needle longevity under cold conditions of high latitudes.
description: Jankowski et al.
 Data
DOI: 10.5061/dryad.3vr71
title: Data from: Effects of radiation from contaminated soil and moss in Fukushima on embryogenesis and egg hatching of the aphid Prociphilus oriens

description: Radiation-contaminated soils are widespread around the Fukushima Daiichi
 Nuclear Power Plant, and such soils raise concerns over its harmful effect
 on soil-dwelling organisms. We evaluated the effects of contaminated soil
 and moss sampled in Fukushima on the embryogenesis and hatching of aphid
 eggs, along with the measurement of the egg exposure dose. Cs-137
 concentration in soil and moss from Fukushima ranged from 2200 to 3300
 Bq/g and from 64 to 105 Bq/g, respectively. Eggs of the eriosomatine aphid
 Prociphilus oriens that were collected from a non-contaminated area were
 directly placed on the soil and moss for 4 or 3 months during diapause and
 then incubated until hatching. The total exposure dose to the eggs was
 estimated as ca. 100–200 mGy in the 4-month soil experiment and 4–10 mGy
 in the 4-month moss experiment. There was no significant difference in egg
 hatchability between the contaminated soil treatment and the control. No
 morphological abnormalities were detected in the first instars that
 hatched from the contaminated soil treatment. However, we found weak
 effects of radiation on egg hatching; eggs placed on the contaminated moss
 hatched earlier than did the control eggs. On the contaminated soil, the
 effects of radiation on egg hatching were not obvious because of
 uncontrolled environmental differences among containers. The effects of
 radiation on egg hatching were detected only in containers where high
 hatchability was recorded. Through the experiments, we concluded that the
 aphid eggs responded to ultra-low-dose radiation by advancing
 embryogenesis.
description: Hatch soil,
 mossThis file includes the
 number of hatched larvae of Prociphilus oriens on each day in three
 experimental treatments (4-month soil, 3-month soil, and 4-month moss
 treatments). In each treatment, eggs were subjected to radiation from
 contaminated soil or moss or placed on control soil or moss. Eggs were
 placed in plastic cages (100 eggs per cage for the soil treatments and 50
 for the moss treatment).
DOI: 10.5061/dryad.3sr84
title: Data from: Evolution of haploid–diploid life cycles when haploid and diploid fitnesses are not equal

description: Many organisms spend a significant portion of their life cycle as haploids
 and as diploids (a haploid–diploid life cycle). However, the evolutionary
 processes that could maintain this sort of life cycle are unclear. Most
 previous models of ploidy evolution have assumed that the fitness effects
 of new mutations are equal in haploids and homozygous diploids, however,
 this equivalency is not supported by empirical data. With different
 mutational effects, the overall (intrinsic) fitness of a haploid would not
 be equal to that of a diploid after a series of substitution events.
 Intrinsic fitness differences between haploids and diploids can also arise
 directly, for example because diploids tend to have larger cell sizes than
 haploids. Here, we incorporate intrinsic fitness differences into genetic
 models for the evolution of time spent in the haploid versus diploid
 phases, in which ploidy affects whether new mutations are masked.
 Life-cycle evolution can be affected by intrinsic fitness differences
 between phases, the masking of mutations, or a combination of both. We
 find parameter ranges where these two selective forces act and show that
 the balance between them can favor convergence on a haploid–diploid life
 cycle, which is not observed in the absence of intrinsic fitness
 differences.
description: C++ code for the
 evolution of life cycle in a alternation modelThe program simulates
 the evolution of the relative length of the haploid and diploid phase in a
 haploid-diploid population subjected to deleterious
 mutations.life_cycles_alternation.zip
DOI: 10.5061/dryad.mk649
title: Data from: Reconstructing changes in the genotype, phenotype, and climatic niche of an introduced species

description: An introduced species must contend with enormous environmental variation
 in its introduced range. In this study, we use niche models and ordination
 analyses to reconstruct changes in genotype, phenotype, and climatic niche
 of Johnsongrass (Sorghum halepense), which is regarded as one of the
 world's most threatening invasive plants. In the United States,
 Johnsongrass has rapidly evolved within- and among-population genetic
 diversity; our results show that genetic differentiation in expanding
 Johnsongrass populations has resulted in phenotypic variation that is
 consistent with habitat and climatic variation encountered during its
 expansion. Moreover, Johnsongrass expanded from agricultural to
 non-agricultural habitat, and now, despite occupying overlapping ranges,
 extant agricultural and non-agricultural populations are genetically and
 phenotypically distinct and manifest different plastic responses when
 encountering environmental variation. Non-agricultural accessions are
 broadly distributed in climatic and geographic space and their fitness
 traits demonstrate plastic responses to common garden conditions that are
 consistent with local specialization. In contrast, agricultural accessions
 demonstrate “general purpose” plastic responses and have more restricted
 climatic niches and geographic distributions. They also grow much larger
 than non-agricultural accessions. If these differences are adaptive, our
 results suggest that adaptation to local habitat variation plays a crucial
 role in the ecology of this invader. Further, its success relates to its
 ability to succeed on dual fronts, by responding simultaneously to habitat
 and climate variability and by capitalizing on differential responses to
 these factors during its range expansion.
description: AtwaterEtAl2015EcographyDataThis .zip file contains the data used for this paper, along with a ReadMe file describing each data set.
DOI: 10.5061/dryad.875kh
title: Data from: Rescued wildlife in China remains at risk

description: Improper treatment of ‘rescued’ animals substantially undermines welfare
 ethos of CITES guidance. We briefly report on the fate of confiscated live
 wild animals in China between 2010 and 2015, where illegal trade in both
 exotic and native wildlife continues to flourish. In particular, we draw
 attention to China’s lack of legislation or protocols ‘appropriate and
 consistent’ with the CITES code of practice pertaining to the protection
 of illegally traded wildlife after rescue.
description: Supplementary
 Materials
DOI: 10.5061/dryad.g02q5
title: Data from: Why do frog and toad forelimbs suddenly (but asynchronously) appear every time metamorphosis is near?

description: 1. The internal development and the emergence of the forelimbs at
 metamorphosis is a defining feature of anuran amphibians (frogs and
 toads). However, although forelimb emergence is considered sudden, it is
 rarely synchronous. Any asynchrony may or may not exacerbate the increased
 drag that is predicted to occur with the emergence of the forelimbs at
 metamorphic climax. 2. Despite the impact forelimb emergence is
 hypothesized to have on individual survival and life-history evolution,
 the degree of asynchrony between forelimb emergence, and any consequences
 of such asymmetry, has not been investigated. The asynchrony in forelimb
 emergence also provides an opportunity to test the currently held
 evolutionary basis for the internal development and sudden emergence of
 the forelimbs in anurans. 3. Using a diverse range of anuran taxonomic
 groups, we measured the time between, and pattern of, the emergence of the
 forelimbs across a range of species. To examine the evolutionary impacts
 of forelimb emergence, we assessed locomotory performance when individuals
 had zero, one or two forelimbs emerged. 4. The duration of time between
 the emergence of the two forelimbs was longer and more variable than
 predicted. Furthermore, no species suffered impaired burst speeds nor was
 their angle of escape affected as the forelimbs emerged asynchronously. In
 fact, burst swimming speed was faster after the emergence of one and two
 forelimbs than prior to their emergence. 5. Fundamentally, our results
 call into question the proposition, long accepted, that internal forelimb
 development is associated with locomotion and reducing drag during
 metamorphosis. This does not appear to be the case, and we suggest that
 anatomical or developmental constraints or advantages may be responsible.
description: Forelimb emergence
 speed, direction and angle of escape datasheetForelimb emergence speed and
 angle of escape datasheet.csvTiming of forelimb
 emergence
DOI: 10.5061/dryad.7t207
title: Data from: Late Triassic (Julian) conodont biostratigraphy of a transition from reefal limestones to deep-water environments on the Cimmerian terranes (Taurus mountains, southern Turkey)

description: Sections at Aşağiyaylabel and Yukariyaylabel, Taurus Mountains, southern
 Turkey, provide a rare opportunity to investigate conodont faunas in
 detail across a reef to slope transition. Intensive sampling of limestone
 beds (wackestones to packstones) through approximately 3 m at these
 locations has led to the recognition of a new lower Carnian (Julian 1/2)
 conodont fauna within the Kartoz and Kasimlar formations. Members of the
 subfamilies Paragondolellinae and Pseudofurnishiinae are recognized. The
 genus Kraussodontus is reported for the first time from the Taurus
 Mountains. Mosherella postkockeli and Mosherella praebudaensis sp. nov.
 occur within the lower Carnian Carbonate Member of the Kasimlar Formation
 from the Taurus Platform Units. The discovery of the new conodont
 assemblages from Aşağiyaylabel and Yukariyaylabel facilitates a
 correlation with faunal assemblages worldwide.
description: Data matrix for Unitary
 Association analysesData
 matrixSupplementary_File_1_Unitary_Association.docx
DOI: 10.5061/dryad.h9c4vm70
title: Data from: Understanding age-specific dispersal in fishes through hydrodynamic modelling, genetic simulations and microsatellite DNA analysis

description: Many marine species have vastly different capacities for dispersal during
 larval, juvenile and adult life stages, and this has the potential to
 complicate the identification of population boundaries and the
 implementation of effective management strategies such as marine protected
 areas. Genetic studies of population structure and dispersal rarely
 disentangle these differences and usually provide only lifetime-averaged
 information that can be considered by managers. We address this limitation
 by combining age-specific autocorrelation analysis of microsatellite
 genotypes, hydrodynamic modelling and genetic simulations to reveal
 changes in the extent of dispersal during the lifetime of a marine fish.
 We focus on an exploited coral reef species, Lethrinus nebulosus, which
 has a circum-tropical distribution and is a key component of a
 multispecies fishery in northwestern Australia. Conventional population
 genetic analyses revealed extensive gene flow in this species over vast
 distances (up to 1500 km). Yet, when realistic adult dispersal behaviours
 were modelled, they could not account for these observations, implying
 adult dispersal does not dominate gene flow. Instead, hydrodynamic
 modelling showed that larval L. nebulosus are likely to be transported
 hundreds of kilometres, easily accounting for the observed gene flow.
 Despite the vast scale of larval transport, juvenile L. nebulosus
 exhibited fine-scale genetic autocorrelation, which declined with age.
 This implies both larval cohesion and extremely limited juvenile dispersal
 prior to maturity. The multidisciplinary approach adopted in this study
 provides a uniquely comprehensive insight into spatial processes in this
 marine fish.
description: Berry_et_al_Lethrinus_nebulosus
DOI: 10.5061/dryad.r475hr3
title: Data from: Quantitative acoustic differentiation of cryptic species illustrated with King and Clapper rails

description: Reliable species identification is vital for survey and monitoring
 programs. Recently, the development of digital technology for recording
 and analyzing vocalizations has assisted in acoustic surveying for
 cryptic, rare, or elusive species. However, the quantitative tools that
 exist for species differentiation are still being refined. Using
 vocalizations recorded in the course of ecological studies of a King Rail
 (Rallus elegans) and a Clapper Rail (R. crepitans) population, we assessed
 the accuracy and effectiveness of three parametric (logistic regression,
 discriminant function analysis, quadratic discriminant function analysis)
 and six nonparametric (support vector machine, CART, Random Forest,
 k-nearest neighbor, weighted k-nearest neighbor, and neural networks)
 statistical classification methods for differentiating these species by
 their kek mating call. We identified 480 kek notes of each species and
 quantitatively characterized them with five standardized acoustic
 parameters. Overall, nonparametric classification methods outperformed
 parametric classification methods for species differentiation
 (nonparametric tools were between 67–81% accurate, parametric tools were
 between 56–60% accurate). Of the nine classification methods, Random
 Forest was the most accurate and precise, resulting in 81.1% correct
 classification of kek notes to species. This suggests that the mating
 calls of these sister species are likely difficult for human observers to
 tell apart. However, it also implies that appropriate statistical tools
 may allow reasonable species-level classification accuracy of recorded
 calls and provide an alternative to species classification where other
 capture- or genotype-based survey techniques are not possible.
description: King and Clapper Rail
 Kek Note MeasurementsComma-separated file
 with all data used for the analyses in Stiffler et al (2018). File
 contains spectrographic parameters taken from 480 Clapper Rail (CLRA) and
 480 King Rail (KIRA) kek notes. The parameters of interest include Peak
 Frequency (Peak Freq), 1st Quartile Frequency (Q1 Freq), 3rd Quartile
 Frequency (Q3 Freq), Inter-quartile Range Bandwidth (IQR BW), Frequency 5%
 (Freq 5%), Frequency 95% (Freq 95%), and Bandwidth 90% (BW 90%). Clapper
 Rail vocalizations were recorded by L. Stiffler and King Rail
 vocalizations were recorded by K. Schroeder.KIRACLRA.csv
DOI: 10.5061/dryad.fp112
title: Data from: Genetic signatures of variation in population size in a native fungal pathogen after the recent massive plantation of its host tree

description: Historical fluctuations in forests' distribution driven by past
 climate changes and anthropogenic activities can have large impacts on the
 demographic history of pathogens that have a long co-evolution history
 with these host trees. Using a population genetic approach, we
 investigated that hypothesis by reconstructing the demographic history of
 Armillaria ostoyae, one of the major pathogens of the maritime pine (Pinus
 pinaster), in the largest monospecific pine planted forest in Europe
 (south-western France). Genetic structure analyses and approximate
 Bayesian computation approaches revealed that a single pathogen population
 underwent a severe reduction in effective size (12 times lower) 1080-2080
 generations ago, followed by an expansion (4 times higher) during the last
 4 generations. These results are consistent with the history of the
 maritime pine forest in the region characterized by a strong recession
 during the last glaciation (~19 000 years ago) and massive plantations
 during the second half of the nineteenth century. Results suggest that
 recent and intensive plantations of a host tree population have offered
 the opportunity for a rapid spread and adaptation of their pathogens.
description: Armillaria ostoyae
 individuals genotyped using polymorphic markersThe data set included
 206 Armillaria ostoyae individuals collected in the Landes de Gascogne
 forest (south-western France) between 2012 and 2014. Each individual was
 genotyped at 29 markers: 7 microsatellites and 22 single nucleotide
 polymorphism (SNP) markers.Labbe_2017_Heredity_Dataset.xlsx