cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18739/a2tm7214p
title: Bering Strait CTD (conductivity, temperature, and depth) data, 2018

description: This is an archive of CTD (conductivity, temperature, and depth) data from the 2018 Bering Strait mooring cruise. The cruise was funded by the National Science Foundation (NSF)-Arctic Observing Network grants: - PLR (Division of Polar Programs) -1304052 (PIs (Principal Investigators): Woodgate, Heimbach and Nguyen), and - PLR-1758565 (PIs: Woogate and Peralta-Ferriz). The data are from a ~ 10 day cruise on the United States (US) vessel Norseman II from 10th-19th August 2018 sailing from and to Nome, Alaska to the Bering Strait and southern Chukchi Sea. The cruise was also to service oceanographic moorings in the strait and those data are archived separately. A total of 142 casts were taken and are included in this archive. No water samples were taken during this cruise. Stations were taken in US waters near mooring locations and on sections in the Bering Strait and southern Chukchi Sea. See cruise report for map, station locations, calibration, and processing details. The data are taken using an SBE911p system, recording: - pressure - temperature (dual system) - conductivity (dual system) - oxygen (dual system) - fluorescence - turbidity For an overview of previous and on-going Bering Strait mooring work, please see http://psc.apl.washington.edu/BeringStrait.html. For details of the measurements and their interpretation, please see: -Woodgate, R.A., K.M. Stafford and F.G. Prahl (2015) A synthesis of year-round interdisciplinary mooring measurements in the Bering Strait (1990-2014) and the RUSALCA (Russian-American Long-term Census of the Arctic) years (2004-2011), Oceanography 28(3):46-67, doi:10.5670/oceanog.2015.57 Please cite that reference for the data. For queries, please contact: Rebecca Woodgate woodgate@uw.edu (206) 221-3268 Polar Science Center, Applied Physics Lab, University of Washington 1013 NE 40th, Seattle, Washington 98105-6698, United States of America
DOI: 10.5281/zenodo.3354412
title: Inferelator Saccharomyces Cerevisiae Single-Cell Data Set

description: This data is associated with the Inferelator package. It has an expression data set (103118_SS_Data.tsv.gz), which is a [Cells x Genes] TSV file which has 5 included metadata columns [Genotype, Genotype_Group, Replicate, Condition, tenXBarcode]. It also contains a prior data matrix generated from the YEASTRACT database (YEASTRACT_Both_20181118.tsv), a gold standard derived from the YEASTRACT database (gold_standard.tsv), a list of transcription factors (tf_names_restrict.tsv), and a list of protein-coding genes (orfs.tsv). It was initially used in Jackson, C.A., Castro, D.M., Saldi, G.-A., Bonneau, R., and Gresham, D. (2019). Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments. BioRxiv 581678.
DOI: 10.6073/pasta/9590e24b1ce386594773504fe77fb475
title: Plant Density of Perennial Forbs and Subshrubs at Permanent Quadrat Locations on the Jornada Experimental Range (Jornada Basin LTER), 1915-2006

description: This ongoing data set contains counts of perennial forbs and subshrubs in 122 1m x 1m quadrats on the Jornada Experimental Range in the northern extent of the Chihuahuan Desert of New Mexico, USA. These quadrats were established to investigate livestock grazing effects on plant community dynamics as well as responses to variable climatic conditions over time. Vegetation monitoring is carried out by charting the locations of forbs and subshrubs within each quadrat. Quadrats were established at different times, with start dates from 1915 to 1935. Specific quadrat locations were selected for a variety of reasons, but the overall intent was to represent varying plant community conditions across the Jornada Experimental Range. From 1915 to 1924 charting was done by dividing the quadrat frame into a decimeter grid using straps and reproducing locations of plants on grid paper. From 1925 to 2006 charting was done using a pantograph. With few exceptions, quadrats were charted until 1947, and a portion of the quadrats were charted intermittently between 1947 and 1979. Sampling resumed again in 1995 and continues every 5-6 years. Charts are digitally scanned, georeferenced, and chart features are digitally reproduced by hand. This data set is not yet complete; charts are actively being processed by Jornada Experimental Range staff and will be updated to this data package as they become available. A companion data package of basal cover of perennial grasses and canopy cover of shrubs is also available for this project (data package knb-lter-jrn.210351001).
DOI: 10.25386/genetics.8993831
title: Supplemental Material for Lee et al., 2019

description: Table S1 contains results of yeast two hybrid screening using WTS-1 as a bait. Table S2 is the list of genes whose expression was affected in the absence of YAP-1. Figure S1 shows that WTS-1 and YAP-1 bind to each other. Figure S2 shows subcellular localization of intestinal YAP-1 in worms in which Hpo pathway components were knocked down. Figure S3 shows ;arva arrest phenotype of <i>wts-1(of1)</i> which has a point mutation in the 863rd threonine residue of WTS-1. Figure S4 shows the validation of candidates for target genes of YAP-1 and EGL-44 complex. Figure S5. shows <i>tat-2 </i>as a candidate of <i>yap-1 </i>and<i> egl-44 </i>target. Figure S6 shows sphingolipid deficiency-mediated phenotype analysis of <i>yap-1(tm1416). </i>
DOI: 10.25386/genetics.8993831.v1
title: Supplemental Material for Lee et al., 2019

description: Table S1 contains results of yeast two hybrid screening using WTS-1 as a bait. Table S2 is the list of genes whose expression was affected in the absence of YAP-1. Figure S1 shows that WTS-1 and YAP-1 bind to each other. Figure S2 shows subcellular localization of intestinal YAP-1 in worms in which Hpo pathway components were knocked down. Figure S3 shows ;arva arrest phenotype of <i>wts-1(of1)</i> which has a point mutation in the 863rd threonine residue of WTS-1. Figure S4 shows the validation of candidates for target genes of YAP-1 and EGL-44 complex. Figure S5. shows <i>tat-2 </i>as a candidate of <i>yap-1 </i>and<i> egl-44 </i>target. Figure S6 shows sphingolipid deficiency-mediated phenotype analysis of <i>yap-1(tm1416). </i>
DOI: 10.18739/a2pz51m3v
title: Bering Strait Mooring Data, 2017-2018

description: This is an archive of data from moorings deployed in Bering Strait from summer 2017 to summer 2018. Mooring deployments were funded by the National Science Foundation (NSF)-Arctic Observing Network award PLR (Division of Polar Programs)-1304052 (PI (Principal Investigator): Woodgate, Heimbach and Nguyen). The mooring work required 2 dedicated cruises: - in 2017 (7th - 15th July), a ~ 9 day cruise on the US (United States) vessel Norseman2 deployed the moorings. Some CTD (conductivity, temperature, and depth) sections were run on this cruise, and those data are archived separately. - in 2018 (10th - 19th August), a ~ 10 day cruise on the US vessel. For 2017 to 2018, a total of three moorings were deployed: - two moorings (A2 and A4) in the US channel of the strait, - one mooring (A3) at a site just north of the strait. In what follows, mooring names include a two digit suffix to represent year of deployment. Sites A2, and A3 were established in 1990. A2 and A3 have been occupied almost continuously (all years except 1996-1997) since then. Site A4 was established in 2001. Mooring location A2 is in the middle of the eastern (Alaskan side) channel. Mooring location A3 is just north of the strait, immediately east of the Russian-US EEZ (Exclusive Economic Zone) line. Experience has shown that site A3 samples both eastern and western channel water. Mooring location A4 is close to the Alaskan coast and allows measurement of the Alaskan Coastal Current. For an overview of previous and on-going Bering Strait mooring work, please see http://psc.apl.washington.edu/BeringStrait.html. Moorings carry a variety of instruments, listed in the table below. All records are year-round, sampling hourly or more frequently (Time Interval. in table below). Data from instruments marked with * are not included in this archive. For access to these data, please contact the named PI in list below table.
DOI: 10.25345/c5p93z
title: MassIVE MSV000084149 - Heterozygous Hnrnph1 deletion decreases methamphetamine reinforcement, reward, and dopamine release and opposing changes in synaptosomal mitochondrial protein levels
title: Individual variation in the addiction liability of amphetamines can be explained, in part, by heritable genetic factors. We recently identified Hnrnph1 (heterogeneous nuclear ribonucleoprotein H1) as a quantitative trait gene underlying variance in the locomotor stimulant response to methamphetamine in mice. The functional consequences of Hnrnph1 mutation on MA reward and reinforcement and the mechanisms by which Hnrnph1 alters methamphetamine sensitivity are unknown but could involve functional perturbations in dopamine neurotransmission. Here, we showed that mice with a heterozygous mutation in the first coding exon of Hnrnph1 (H1+/-) exhibited reduced methamphetamine reinforcement and intake and dose-dependent changes in methamphetamine reward as measured via conditioned place preference. Accordingly, H1+/- mice showed a robust decrease in methamphetamine-induced dopamine release in the nucleus accumbens with no change in baseline dopamine levels, dopamine transporter levels, or dopamine uptake. Surprisingly, immunohistochemical and immunoblot staining of midbrain dopaminergic neurons and their forebrain projections for tyrosine hydroxylase did not reveal any obvious changes in intensity or numbers of cells stained or in the number of forebrain TH-positive puncta. Finally, we observed a two-fold increase in hnRNP H protein in the striatal synaptosme of H1+/- mice; proteomic analysis identified an increased abundance of several mitochondrial complex I and V proteins. We conclude that H1+/- deficits in behavior are associated with blunted MA-induced dopamine release and an upregulation of synaptic mitochondrial proteins.
DOI: 10.3886/e110942v1
title: Revealed preference analysis with normal goods: Application to cost of living indices

description: We present a revealed preference methodology for nonparametric demand analysis under the assumption of normal goods. Our methodology is flexible in that it allows for imposing normality on any subset of goods. We show the usefulness of our methodology for empirical welfare analysis through cost of living indices. An illusrtration to US consumption data drawn from the Panel Study of In- come Dynamics (PSID) demonstrates that mild normality assumptions can substantially strengthen the empirical analysis. It obtains considerably tighter bounds on cost of living indices, and a significantly more informative classification of better-off and worse-off individuals after the 2008 nancial crisis.<br>
DOI: 10.6073/pasta/cc0b40f7a34e52b612f384ff0f246e06
title: Perennial grass recovery following livestock overgazing and shrub removal: an experiment at the Jornada Experimental Range (Jornada Basin LTER), 1996-2016

description: The objective of this ongoing study is to determine the effect of cattle grazing and shrub removal on the decline and recovery of perennial grasses in a mesquite-invaded black grama grassland on sandy soils in the northern Chihuahuan Desert. The experiment was implemented as a randomized complete block with 3 levels of grazing (summer, winter, and control) and 2 levels of shrub treatment (shrub removal and control) in each of 3 replicate blocks. The 18 experimental units are 0.5 ha (70 x 70 m) exclosures constructed in a mesquite-invaded black grama grassland in the southwest portion of the Jornada Experimental Range in Dona Ana County, New Mexico, USA. Vegetation sampling was conducted with the line-point intercept method. Initial pre-treatment sampling occurred in 1996. Grazing treatments removed 65-80% of aboveground perennial grass biomass over 24-36 hour periods in each of four years from summer 1996 to winter 2000; shrub removal occurred during this time as well. No livestock grazing or shrub removal have occurred since 2000. Post-treatment sampling occurred in 2002, 2009, and 2016.
DOI: 10.18739/a25x25c75
title: High resolution temperature profiles along a latitudinal gradient near Utqiagvik, Atqasuk, and Ivotuk Alaska from 2016-2019

description: The research project will assist in investigations of year-around CH4 (methane) and CO2 (carbon dioxide) fluxes at three Alaskan Arctic sites (Utqiagvik, Atqasuk, and Ivotuk) across a latitudinal gradient of about 300 kilometers from the northern part of the Arctic Coastal Plain to the foothills of the Brooks Range, in Alaska. These measurements will be used to improve estimates of rates and patterns of and controls on annual greenhouse gas fluxes, with special contribution to understanding of the fall, winter and spring fluxes. The project focuses on the rates of CH4 emissions during the fall, winter, and spring seasons, specifically during the "zero-curtain" when soil temperatures remain near 0 degrees Celsius. Around this time the soil column freezes from the top-down and bottom-up and our measurements are made to be able to measure the exact extent and duration of the zero-curtain in the soil. Further this dataset allows for a better characterization of the spring thaw and growing season soil temperatures. We hope that the data may also be able to address the size and conditions of the snowpack during the cold season as well as a full profile of winter-time soil and permafrost measurements. The data-set contains half-hourly mean soil temperatures and standard deviations of 1 Hz (hertz) readings at depths every 5-10 centimeters (cm) ranging from 85 cm above the soil surface to 100 cm below the soil surface. There are two profiles at each site, at the Atqasuk site, two polygon land-forms are represented, however the land-forms at Ivotuk and Utqiagvik were homogeneous so two profiles are redundancies. Measurements were taken using type E thermocouple and AM25T multiplexers with data recorded on either Control Datalogger 1000 (CR1000) or Control Datalogger 6 (CR6) data loggers from Campbell Scientific.
DOI: 10.21421/d2/jil4tv
title: Evaluation of regional varietal trial for adaptation, productivity and disease resistance in Minjibir

description: Groundnut Regional Variety trial with 16 entries (15 test entries from ICRISAT and Samnut-24 as local check variety) (Kano State) and Gumel (Katsina State) making five total sites for the Regional Variety Testing in Nigeria. Experimental location on Google Maps
DOI: 10.25345/c5jh2d
title: MassIVE MSV000084150 - Quantitative proteomic analysis of aqueous humor in a juvenile rabbit lensectomy model reveals surgery stage specific differences in coagulation, complement, and ocular immunosuppressive proteins
title: Purpose: To identify and quantify the proteins associated with the robust postoperative immune response in a juvenile rabbit model of lensectomy with intraocular lens (IOL) insertion. Methods: Twenty-six 6-7 week-old New Zealand White rabbits underwent unilateral portions of lensectomy with IOL insertion including: anterior chamber paracentesis, corneal incision with wound suture, lensectomy only, and lensectomy with IOL insertion. Aqueous humor (AH) was collected immediately prior and three days after each procedure. Semi-quantitative discovery of proteins was achieved using liquid chromatography tandem mass spectrometry (LC-MS/MS). Based on discovery results, targeted quantitation utilizing stable isotopically labeled (SIL) peptides for 3 proteins of interest, fibrinogen-beta chain, transforming growth factor beta-2, and retinol binding protein 3, were used to confirm the observed quantitative trends.
DOI: 10.3886/e110942
title: Revealed preference analysis with normal goods: Application to cost of living indices

description: We present a revealed preference methodology for nonparametric demand analysis under the assumption of normal goods. Our methodology is flexible in that it allows for imposing normality on any subset of goods. We show the usefulness of our methodology for empirical welfare analysis through cost of living indices. An illustration to US consumption data drawn from the Panel Study of Income Dynamics (PSID) demonstrates that mild normality assumptions can substantially strengthen the empirical analysis. It obtains considerably tighter bounds on cost of living indices, and a significantly more informative classification of better-off and worse-off individuals after the 2008 financial crisis.<br>
DOI: 10.17632/znhyhzk2v9.1
title: Data for: The contribution of experimental volcanology to the study of the physics of eruptive processes, and related scaling issues: a review

description: Supplementary Table S1. Analogue materials used in experiments on dykes and sills. Supplementary Table S2. Source and environmental conditions imposed in laboratory experiments simulating explosive volcanic jets and plumes. Supplementary Table S3. Aggregation experiments (modified from Van Eaton et al. 2012). Supplementary Table S4. Source and boundary conditions imposed in laboratory experiments simulating lava flows and domes.
DOI: 10.26180/5d3fccca2893b
title: Appendix 2

description: Geochronology and mineral geochemistry
DOI: 10.21421/d2/voyaxz
title: Evaluation of Regional varietal trial for adaptation,productivity and disease in BUk 2017

description: Groundnut Regional Variety trial with 16 entries (34 test entries from ICRISAT and Samnut-24 and SAMNUT 22 as local check variety) was conducted at two locations viz., BUK Kano & Minjibir (Kano State) . To identify which of the lines will adapt to the new environment, and compete with the local ones in terms of yield Experimental location on Google Maps
DOI: 10.26180/5d3fcee05c8c0
title: Appendix 1

description: Whole rock geochemistry
DOI: 10.5281/zenodo.3354709
title: Sound event localization and detection (SELDnet) results

description: This package is part of the work - Joint Measurement of Localization and Detection of Sound Events presented in WASPAA 2019. This package consists of results from the SELDnet method for joint sound event localization and detection. The results corresponding to different training states of 5, 25 and 75 epochs are provided here. These results are for the four cross-validation splits of the <strong>TAU Spatial Sound Events 2019 - Microphone Array </strong>dataset. The sound events in this dataset consist of stationary point sources from multiple sound classes each associated with a temporal onset and offset time, and DOA coordinate represented using azimuth and elevation angle. This <strong>TAU Spatial Sound Events 2019 - Microphone Array </strong>dataset is part of the DCASE 2019 Sound Event Localization and Detection Task and can be downloaded here. Each of the results folders consists of 400 files, corresponding to the results of the individual recordings of the <strong>TAU Spatial Sound Events 2019 - Microphone Array </strong>dataset. This data collection received funding from the European Research Council, grant agreement 637422 EVERYSOUND. <strong>Download instructions</strong> The three files, <strong><em>mic_dev_5</em></strong>,<strong><em> mic_dev_25, </em></strong>and <strong><em>mic_dev_75</em></strong>, correspond to SELDnet results at 5, 25 and 75 epochs. Download the zip files and use your favorite compression tool to unzip these split zip files.
DOI: 10.5519/qd.ypm6hcif
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (72 records)
DOI: 10.5281/zenodo.3354708
title: Sound event localization and detection (SELDnet) results

description: This package is part of the work - Joint Measurement of Localization and Detection of Sound Events presented in WASPAA 2019. This package consists of results from the SELDnet method for joint sound event localization and detection. The results corresponding to different training states of 5, 25 and 75 epochs are provided here. These results are for the four cross-validation splits of the <strong>TAU Spatial Sound Events 2019 - Microphone Array </strong>dataset. The sound events in this dataset consist of stationary point sources from multiple sound classes each associated with a temporal onset and offset time, and DOA coordinate represented using azimuth and elevation angle. This <strong>TAU Spatial Sound Events 2019 - Microphone Array </strong>dataset is part of the DCASE 2019 Sound Event Localization and Detection Task and can be downloaded here. Each of the results folders consists of 400 files, corresponding to the results of the individual recordings of the <strong>TAU Spatial Sound Events 2019 - Microphone Array </strong>dataset. This data collection received funding from the European Research Council, grant agreement 637422 EVERYSOUND. <strong>Download instructions</strong> The three files, <strong><em>mic_dev_5</em></strong>,<strong><em> mic_dev_25, </em></strong>and <strong><em>mic_dev_75</em></strong>, correspond to SELDnet results at 5, 25 and 75 epochs. Download the zip files and use your favorite compression tool to unzip these split zip files.
DOI: 10.21421/d2/uwlfhu
title: Evaluation of regional varietal trial for adaptation, productivity and disease in Minjibir 2017

description: Groundnut Regional Variety trial with 16 entries (34 test entries from ICRISAT and Samnut-24 and SAMNUT 22 as local check variety) was conducted at locations viz., Minjibir (Kano State) . To identify which of the lines will adapt to the new environment, and compete with the local ones in terms of yield Experimental location on Google Maps
DOI: 10.25345/c5ds9k
title: MassIVE MSV000084151 - Comparing Data Independent Acquisition and Parallel Reaction Monitoring in their abilities to differentiate high density lipoprotein subclasses
title: Raw spectrum files obtained in the comparative study of two targeted methodologies (DIA and PRM) to differentiate HDL subclasses (HDL2 and HDL3).
DOI: 10.3886/e110944
title: Demystifying Tuition? Building a framework for informational quality and accessibility

description: Colleges and universities increasingly rely on their websites to recruit students and convey information about tuition and costs of attendance. Given evidence of growing complexity in institutional tuition policies and cost-setting practices, the study examined how institutions’ websites present financial information to the public. Through content analysis of website data from 50 public colleges and universities, researchers sought to characterize patterns in the scope and quality of tuition information on institutional websites and to understand how these patterns might influence individuals’ conceptions of tuition and costs. The findings point to variation in informational quality across dimensions ranging from clarity of language use and terminology, to consistency and coherence of visual displays, which accompany navigational challenges stemming from information fragmentation and discontinuity across pages. Implications for research and improved institutional practice are discussed.
description: other~~Consistent with qualitative content analysis, search protocol were used to collect artefactual, process-oriented data, including detailed descriptive accounts of information searches and screenshot images of published page views from the websites of the 50-institution sample.
description: Public, four-year colleges and universities in the United States
description: The sample consisted of 50 institutions randomly selected from the overall population of public 4-year institutions and was largely representative based on a set of institutional profile characteristics.