cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15128/r1jm214p120
title: Biaxial Strain Measurements of Jc on a (RE)BCO Coated Conductor [dataset]

description: The attached dataset contains all data plotted in the figures published in: 

Greenwood, Jack R, Surrey, Elizabeth & Hampshire, Damian (2018) 
Biaxial Strain Measurements of JC on a (RE)BCO Coated Conductor. 
IEEE Transactions on Applied Superconductivity (Volume: 28, Issue: 4, June 2018)


Please see the README.txt file inside the .zip file for a more detailed description of the contents.

Jack Greenwood
March 2018

email: jack.r.greenwood@durham.ac.uk
description: In-field, four-terminal d.c current transport measurements were performed on a superconductor that was soldered to a sample holder that was then biaxially strained. The strain was applied by bending the sample holder in 2 different directions simultaneously. Finite element simulations were performed to assess the strain homogeneity of the sample holder.
DOI: 10.5517/ccdc.csd.cc1zkzvc
title: CCDC 1834544: Experimental Crystal Structure Determination

description: Related Article: Bin Zhang|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zkzwd
title: CCDC 1834545: Experimental Crystal Structure Determination

description: Related Article: Bin Zhang|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/ndjjwk
title: Discovery of a new species of Dryocosmus Giraud, 1859 (Hymenoptera: Cynipidae: Cynipini) on Castanopsis tibetana from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pang, Yin, Su, Cheng-Yuan, Zhu, Dao-Hong (2018): Discovery of a new species of Dryocosmus Giraud, 1859 (Hymenoptera: Cynipidae: Cynipini) on Castanopsis tibetana from China. Zootaxa 4403 (1): 99-110, DOI: https://doi.org/10.11646/zootaxa.4403.1.5
DOI: 10.5281/zenodo.1188271
title: Additional Data For The "In-Situ Full Field Measurement During Inter-Facial Debonding In Single Fiber Composite Under Transverse Load"

description: The following document is an extension of the <em>In-situ full field measurement during inter-facial debonding in single fiber composite under transverse load</em> publication. It contains guidelines for the experimental results for the single fiber experiment of epoxy matrix and PTFE fiber, epoxy matrix and galvanized steel matrix, modified epoxy matrix and PTFE fiber and modified epoxy matrix and galvanized steel matrix. The detailed data from the experiments is provided with this document as <em>CSV </em>files.
DOI: 10.5281/zenodo.1211764
title: Death and population dynamics affect mutation rate estimates and evolvability under stress in bacteria

description: Code and data for Frenoy & Bonhoeffer 2018 (Death and population dynamics affect mutation rate estimates and evolvability under stress in bacteria, in PLoS Biology)

See README for details and steps to reproduce the full analysis from the raw data
DOI: 10.5281/zenodo.1211765
title: Death and population dynamics affect mutation rate estimates and evolvability under stress in bacteria

description: Code and data for Frenoy & Bonhoeffer 2018 (Death and population dynamics affect mutation rate estimates and evolvability under stress in bacteria, in PLoS Biology)

See README for details and steps to reproduce the full analysis from the raw data
DOI: 10.5517/ccdc.csd.cc1zl1f1
title: CCDC 1834593: Experimental Crystal Structure Determination

description: Related Article: Frank R. Fronczek|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/9lddaz
title: DNA Barcodes Identify the Larvae and Unassociated Male of Three Onycholyda Sawflies (Hymenoptera, Pamphiliidae) from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shinohara, Akihiko, Kakuda, Tsuneo, Wei, Meicai, Kameda, Yuichi (2018): DNA Barcodes Identify the Larvae and Unassociated Male of Three Onycholyda Sawflies (Hymenoptera, Pamphiliidae) from China. Zootaxa 4403 (1): 123-132, DOI: https://doi.org/10.11646/zootaxa.4403.1.7
DOI: 10.15468/q93npp
title: A new species of Myloplus Gill (Characiformes, Serrasalmidae) from the Tumucumaque Mountain Range, Brazil and French Guiana, with comments on M. rubripinnis

description: This dataset contains the digitized treatments in Plazi based on the original journal article Andrade, Marcelo C., Jégu, Michel, Gama, Cecile S. (2018): A new species of Myloplus Gill (Characiformes, Serrasalmidae) from the Tumucumaque Mountain Range, Brazil and French Guiana, with comments on M. rubripinnis. Zootaxa 4403 (1): 111-122, DOI: https://doi.org/10.11646/zootaxa.4403.1.6
DOI: 10.5281/zenodo.1204291
title: Reduced Size Illumina Novaseq Runfolder

description: This dataset is a reduced size version of an Illumina NovaSeq run of PhiX, where all but the first four cycles have been removed. All metadata associated with the run has been kept intact. This dataset is e.g. useful in testing workflows which require raw Illumina data (i.e. bcl files rather than fastq files).

To demultiplex this data with Illumina bclfastq (https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html) it is recommended that the following options are used:

<pre><code>--ignore-missing-bcls --ignore-missing-filter --ignore-missing-positions --use-bases-mask y4n*,n*</code></pre>

This work was supported by the R&D group at the SNP&SEQ Technology Platform in Uppsala. This facility is part of the National Genomics Infrastructure (NGI) Sweden and Science for Life Laboratory. The SNP&SEQ Platform is also supported by the Swedish Research Council and the Knut and Alice Wallenberg Foundation.
DOI: 10.5281/zenodo.1209237
title: Plasmodium Bromodomain Pfbdp4; A Target Enabling Package

description: There are 8 bromodomain-containing proteins in each annotated Plasmodium genome, with only one containing dual bromodomains (BRDs) – i.e. a total of 9 BRDs. In collaboration with SGC Oxford, we have expressed, purified and crystallized the BRDs in PfBDP1, PfBDP3, PfBDP4 (namely PfBDP4B) and PfGCN5. By screening all four against a focused BRD inhibitor library (SGC Oxford) using the DSF assay, we identified a small number of hits that were subsequently validated and quantitatively assessed using ITC. Two similar compounds with the dihydropteridinone scaffold, namely BI2536 and BI6727, stood out as potent inhibitors of PfBDP4B (both with Kd below 200 nM). We further collaborated with U of Melbourne to test them against Pf3D7 and found them capable of inhibiting blood stage development at sub-micromolar concentrations. Analysis of the co-structure of PfBDP4B+BI2536 suggests the possibility of increasing the potency and selectivity of inhibition.
description: This document represents version 5 of the TEP datasheet and includes all updates on the project as of October 2018.  For more information about TEPs and the TEP Programme, please visit https://thesgc.org/tep.
DOI: 10.5281/zenodo.1209238
title: Plasmodium Bromodomain Pfbdp4; A Target Enabling Package

description: There are 8 bromodomain-containing proteins in each annotated Plasmodium genome, with only one containing dual bromodomains (BRDs) – i.e. a total of 9 BRDs. In collaboration with SGC Oxford, we have expressed, purified and crystallized the BRDs in PfBDP1, PfBDP3, PfBDP4 (namely PfBDP4B) and PfGCN5. By screening all four against a focused BRD inhibitor library (SGC Oxford) using the DSF assay, we identified a small number of hits that were subsequently validated and quantitatively assessed using ITC. Two similar compounds with the dihydropteridinone scaffold, namely BI2536 and BI6727, stood out as potent inhibitors of PfBDP4B (both with Kd below 200 nM). We further collaborated with U of Melbourne to test them against Pf3D7 and found them capable of inhibiting blood stage development at sub-micromolar concentrations. Analysis of the co-structure of PfBDP4B+BI2536 suggests the possibility of increasing the potency and selectivity of inhibition.
DOI: 10.5281/zenodo.1209241
title: Human Set Domain Bifurcated 1 (Setdb1), Tudor Domain; A Target Enabling Package

description: SETDB1 is a H3K9 methyltransferase involved in transcriptional silencing with a catalytic SET domain and a triple Tudor domain containing a methyl-lysine binding site. SGC Toronto previously solved the apo structure of the Tudor domain (PDB code 3DLM). Amplification of SETDB1 in over 15% lung adenocarcinoma correlates with high mRNA and protein levels and its depletion in SETDB1-amplified cells reduces cancer growth in cell culture and nude mice models, whereas its overexpression increases tumour invasiveness (Rodriguez-Paredes et al. Oncogene 2014, Shah et al. Epigenetic Chromatin 2014). Several histone methyltransferases are known to have non-catalytic functions that might be alternative targeting strategies. For instance, recognition of H3K9 methylation by the ankyrin repeat of the methyltransferase GLP is required for efficient establishment of H3K9 methylation (Liu et al. Genes Dev. 2015). No catalytic domain inhibitor of SETDB1 has been reported to date. The goal of this TEP is to enable the discovery of potent, selective compounds targeting the Tudor domain of SETDB1.
DOI: 10.5281/zenodo.1211625
title: Model-Based Evaluation Of Signal Processing Algorithms For The Detection Of Rub In Aeroderivative Gas Turbines With Accelerometers On Casing

description: Latex source files, figures and images included in the text, Matlab m-codes for rotor-casing model simulation and data processing, and mat-files with the outputs of model simulations.
description: For any problem or question do not hesitate to contact the first author by email: a.silvab@alumnos.upm.es
DOI: 10.5281/zenodo.1209232
title: Human Histone Deacetylase 6 (Hdac6); A Target Enabling Package

description: HDAC6 is a cytosolic deacetylase with diverse roles in cellular trafficking, autophagy and cell signalling. Specifically targeting the unique zinc-finger ubiquitin-binding domain (ZnF-UBD) of HDAC6 may be an attractive strategy in myeloma and lymphoma but no inhibitor has been reported to date. Presented here are 4 co-crystal structures of HDAC6 ZnF-UBD in complex with different compounds, and associated SPR, ITC and FP assays.
description: This document represents version 5 of the TEP datasheet and includes all updates on the project as of October 2018.  For more information about TEPs and the TEP Programme, please visit https://thesgc.org/tep.
DOI: 10.5281/zenodo.1209233
title: Human Histone Deacetylase 6 (Hdac6); A Target Enabling Package

description: HDAC6 is a cytosolic deacetylase with diverse roles in cellular trafficking, autophagy and cell signalling. Specifically targeting the unique zinc-finger ubiquitin-binding domain (ZnF-UBD) of HDAC6 may be an attractive strategy in myeloma and lymphoma but no inhibitor has been reported to date. Presented here are 4 co-crystal structures of HDAC6 ZnF-UBD in complex with different compounds, and associated SPR, ITC and FP assays.
DOI: 10.5281/zenodo.1209240
title: Human SET domain bifurcated 1 (SETDB1), Tudor domain; A Target Enabling Package

description: SETDB1 is a H3K9 methyltransferase involved in transcriptional silencing with a catalytic SET domain and a triple Tudor domain containing a methyl-lysine binding site. SGC Toronto previously solved the apo structure of the Tudor domain (PDB code 3DLM). Amplification of SETDB1 in over 15% lung adenocarcinoma correlates with high mRNA and protein levels and its depletion in SETDB1-amplified cells reduces cancer growth in cell culture and nude mice models, whereas its overexpression increases tumour invasiveness (Rodriguez-Paredes et al. Oncogene 2014, Shah et al. Epigenetic Chromatin 2014). Several histone methyltransferases are known to have non-catalytic functions that might be alternative targeting strategies. For instance, recognition of H3K9 methylation by the ankyrin repeat of the methyltransferase GLP is required for efficient establishment of H3K9 methylation (Liu et al. Genes Dev. 2015). No catalytic domain inhibitor of SETDB1 has been reported to date. The goal of this TEP is to enable the discovery of potent, selective compounds targeting the Tudor domain of SETDB1.
description: This document represents version 6 of the TEP datasheet and includes all updates on the project as of April 2019.  For more information about TEPs and the TEP Programme, please visit https://thesgc.org/tep.
DOI: 10.5517/ccdc.csd.cc1plk72
title: CCDC 1566964: Experimental Crystal Structure Determination

description: Related Article: Joseph M. Marrett, Cristina Mottillo, Simon Girard, Christopher W. Nickels, Jean-Louis Do, Gandrath Dayaker, Luzia S. Germann, Robert E. Dinnebier, Ashlee J. Howarth, Omar K. Farha, Tomislav Frišcic, Chao-Jun Li|2018|Cryst.Growth Des.|18|3222|doi:10.1021/acs.cgd.8b00385
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q7fp2
title: CCDC 1586074: Experimental Crystal Structure Determination

description: Related Article: Anilkumar Gunnam, Kuthuru Suresh, Ashwini Nangia|2018|Cryst.Growth Des.|18|2824|doi:10.1021/acs.cgd.7b01600
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q7fq3
title: CCDC 1586075: Experimental Crystal Structure Determination

description: Related Article: Anilkumar Gunnam, Kuthuru Suresh, Ashwini Nangia|2018|Cryst.Growth Des.|18|2824|doi:10.1021/acs.cgd.7b01600
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/pqy212
title: Taxonomic contributions to Ageniella Banks, 1912 (Hymenoptera: Pompilidae) from Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Waichert, Cecilia, Colombo, Wesley Dondoni, Von Dohlen, Carol D., Pitts, James P. (2018): Taxonomic contributions to Ageniella Banks, 1912 (Hymenoptera: Pompilidae) from Brazil. Zootaxa 4403 (1): 133-153, DOI: https://doi.org/10.11646/zootaxa.4403.1.8
DOI: 10.5517/ccdc.csd.cc1q7fs5
title: CCDC 1586077: Experimental Crystal Structure Determination

description: Related Article: Anilkumar Gunnam, Kuthuru Suresh, Ashwini Nangia|2018|Cryst.Growth Des.|18|2824|doi:10.1021/acs.cgd.7b01600
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q7fv7
title: CCDC 1586079: Experimental Crystal Structure Determination

description: Related Article: Anilkumar Gunnam, Kuthuru Suresh, Ashwini Nangia|2018|Cryst.Growth Des.|18|2824|doi:10.1021/acs.cgd.7b01600
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q7fw8
title: CCDC 1586080: Experimental Crystal Structure Determination

description: Related Article: Anilkumar Gunnam, Kuthuru Suresh, Ashwini Nangia|2018|Cryst.Growth Des.|18|2824|doi:10.1021/acs.cgd.7b01600
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q7fx9
title: CCDC 1586081: Experimental Crystal Structure Determination

description: Related Article: Anilkumar Gunnam, Kuthuru Suresh, Ashwini Nangia|2018|Cryst.Growth Des.|18|2824|doi:10.1021/acs.cgd.7b01600
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q7fyb
title: CCDC 1586082: Experimental Crystal Structure Determination

description: Related Article: Anilkumar Gunnam, Kuthuru Suresh, Ashwini Nangia|2018|Cryst.Growth Des.|18|2824|doi:10.1021/acs.cgd.7b01600
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q7fzc
title: CCDC 1586083: Experimental Crystal Structure Determination

description: Related Article: Anilkumar Gunnam, Kuthuru Suresh, Ashwini Nangia|2018|Cryst.Growth Des.|18|2824|doi:10.1021/acs.cgd.7b01600
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z1hk2
title: CCDC 1818694: Experimental Crystal Structure Determination

description: Related Article: Scott A. Pattenaude, Ezra J. Coughlin, Tyler S. Collins, Matthias Zeller, Suzanne C. Bart|2018|Inorg.Chem.|57|4543|doi:10.1021/acs.inorgchem.8b00298
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z1hl3
title: CCDC 1818695: Experimental Crystal Structure Determination

description: Related Article: Scott A. Pattenaude, Ezra J. Coughlin, Tyler S. Collins, Matthias Zeller, Suzanne C. Bart|2018|Inorg.Chem.|57|4543|doi:10.1021/acs.inorgchem.8b00298
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z7f9y
title: CCDC 1824390: Experimental Crystal Structure Determination

description: Related Article: Pierre Thuéry, Youssef Atoini, Jack Harrowfield|2018|Cryst.Growth Des.|18|3167|doi:10.1021/acs.cgd.8b00266
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z7fbz
title: CCDC 1824391: Experimental Crystal Structure Determination

description: Related Article: Pierre Thuéry, Youssef Atoini, Jack Harrowfield|2018|Cryst.Growth Des.|18|3167|doi:10.1021/acs.cgd.8b00266
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z7fd1
title: CCDC 1824393: Experimental Crystal Structure Determination

description: Related Article: Pierre Thuéry, Youssef Atoini, Jack Harrowfield|2018|Cryst.Growth Des.|18|3167|doi:10.1021/acs.cgd.8b00266
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/awnk5i
title: A review of Newportia species in the subgenus Newportides Chamberlin, 1921 (Scolopendromorpha, Scolopocryptopidae, Newportiinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chagas-Jr, Amazonas (2018): A review of Newportia species in the subgenus Newportides Chamberlin, 1921 (Scolopendromorpha, Scolopocryptopidae, Newportiinae). Zootaxa 4403 (1): 154-170, DOI: https://doi.org/10.11646/zootaxa.4403.1.9