cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13992339
title: biodiscover-arm

description: 54 annotated images of insects grouped in a container, partially covered in ethanol, from a top view. The photographs are taken during the winter of 2023-2024 at the Section for Biodiversity, Institute for Ecoscience, Aarhus University. Raw/test bulk samples of arthropods in 75% ethanol are placed in the tray of the Biodiscover system. 

Each insect is annotated as a polygon.

Most images were acquired in 2023, in Denmark.

Annotations are contained, as polygons in COCO format, in `instances_default.json`.

Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13992340
title: biodiscover-arm

description: 54 annotated images of insects grouped in a container, partially covered in ethanol, from a top view. The photographs are taken during the winter of 2023-2024 at the Section for Biodiversity, Institute for Ecoscience, Aarhus University. Raw/test bulk samples of arthropods in 75% ethanol are placed in the tray of the Biodiscover system. 

Each insect is annotated as a polygon.

Most images were acquired in 2023, in Denmark.

Annotations are contained, as polygons in COCO format, in `instances_default.json`.

Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13991236
title: gernat2018

description: 38 annotated images of honeybees in hives.

The images were collected as part of a still unpublished study that was performed from July 14, 2018 to September 13, 2018 by the Robinson Lab at the University of Illinois at Urbana-Champaign in Urbana, Illinois, USA. During this experiment, 6 honey bee colonies consisting of ~1,200 barcoded bees housed inside an observation hive were recorded with the tracking rig described in [1] and [2].

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).

-------------------------

[1] Gernat, T., Rao, V. D., Middendorf, M., Dankowicz, H., Goldenfeld, N., Robinson, G. E. (2018). Automated monitoring of behavior reveals bursty interaction patterns and rapid spreading dynamics in honey bee social networks. Proceedings of the National Academy of Sciences of the United States of America, 115(7). DOI: 10.1073/pnas.1713568115.

[2] Geffre, A. C., Gernat, T., Harwood, G. P., Jones, B. M., Morselli Gysi, D., Hamilton, A. R., Bonning, B. C., Toth, A. L., Robinson, G. E., & Dolezal, A. G. (2020). Honey bee virus causes context-dependent changes in host social behavior. Proceedings of the National Academy of Sciences of the United States of America, 117(19). DOI: 10.1073/pnas.2002268117
DOI: 10.5281/zenodo.13991237
title: gernat2018

description: 38 annotated images of honeybees in hives.

The images were collected as part of a still unpublished study that was performed from July 14, 2018 to September 13, 2018 by the Robinson Lab at the University of Illinois at Urbana-Champaign in Urbana, Illinois, USA. During this experiment, 6 honey bee colonies consisting of ~1,200 barcoded bees housed inside an observation hive were recorded with the tracking rig described in [1] and [2].

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).

-------------------------

[1] Gernat, T., Rao, V. D., Middendorf, M., Dankowicz, H., Goldenfeld, N., Robinson, G. E. (2018). Automated monitoring of behavior reveals bursty interaction patterns and rapid spreading dynamics in honey bee social networks. Proceedings of the National Academy of Sciences of the United States of America, 115(7). DOI: 10.1073/pnas.1713568115.

[2] Geffre, A. C., Gernat, T., Harwood, G. P., Jones, B. M., Morselli Gysi, D., Hamilton, A. R., Bonning, B. C., Toth, A. L., Robinson, G. E., & Dolezal, A. G. (2020). Honey bee virus causes context-dependent changes in host social behavior. Proceedings of the National Academy of Sciences of the United States of America, 117(19). DOI: 10.1073/pnas.2002268117
DOI: 10.5281/zenodo.13992378
title: pinoy2023

description: 76 annotated images of insects on white sticky cards. Images were acquired with a flatbed scanner. The study was conducted on the Aarhus University campus in Denmark, which covers an area of approximately 50 hectares, at each of the five wildflower beds on the Aarhus University campus. The sticky traps were set up from July to September 2023 and systematically placed throughout the study area to ensure representative sampling of insect diversity. In each of the study areas, the sticky traps were placed at equidistant intervals of two metres along 10-metre-long transects of the wildflower meadows. To cover most of the insect visitation, we placed one plate of each colour (n=8) at the edge of the wildflower beds and one plate of each colour (n=8) at the centre of each wildflower bed.

Each insect is annotated as a polygon.Annotations are contained, as polygons in COCO format, in `instances_default.json`.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13992379
title: pinoy2023

description: 76 annotated images of insects on white sticky cards. Images were acquired with a flatbed scanner. The study was conducted on the Aarhus University campus in Denmark, which covers an area of approximately 50 hectares, at each of the five wildflower beds on the Aarhus University campus. The sticky traps were set up from July to September 2023 and systematically placed throughout the study area to ensure representative sampling of insect diversity. In each of the study areas, the sticky traps were placed at equidistant intervals of two metres along 10-metre-long transects of the wildflower meadows. To cover most of the insect visitation, we placed one plate of each colour (n=8) at the edge of the wildflower beds and one plate of each colour (n=8) at the centre of each wildflower bed.

Each insect is annotated as a polygon.Annotations are contained, as polygons in COCO format, in `instances_default.json`.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13991166
title: AMI-traps

description: 179 annotated images of insects on AMI traps (10.3390/s21020343).Most images were acquired in 2023, in Denmark.

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13991167
title: AMI-traps

description: 179 annotated images of insects on AMI traps (10.3390/s21020343).Most images were acquired in 2023, in Denmark.

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13930054
title: PeMaToEuroPep

description: 284 annotated images of insects on sticky cards. Images are unmodified from https://www.kaggle.com/datasets/friso1987/yellow-sticky-traps/data (CC0).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13930055
title: PeMaToEuroPep

description: 284 annotated images of insects on sticky cards. Images are unmodified from https://www.kaggle.com/datasets/friso1987/yellow-sticky-traps/data (CC0).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13991267
title: AMT

description: 111 annotated images of insects on light traps. Images are unmodified from "Example pictures AMT" (10.17192/fdr/194).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13991268
title: AMT

description: 111 annotated images of insects on light traps. Images are unmodified from "Example pictures AMT" (10.17192/fdr/194).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13929921
title: DiversityScanner

description: 529 annotated images of individual insects in standard laboratory conditions. Images are unmodified from "DiversityScanner" (10.17605/OSF.IO/EN594).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13929922
title: DiversityScanner

description: 529 annotated images of individual insects in standard laboratory conditions. Images are unmodified from "DiversityScanner" (10.17605/OSF.IO/EN594).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13991199
title: Diopsis

description: 63 annotated images of insects on the Diopsis camera trap. Images are unmodified from 10.5281/zenodo.10853096.

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13991200
title: Diopsis

description: 63 annotated images of insects on the Diopsis camera trap. Images are unmodified from 10.5281/zenodo.10853096.

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13920371
title: cao2022

description: 60 annotated images of ants in a Petri dish. Images are an unmodified subset from "ANTS--ant detection and tracking" (10.17632/9ws98g4npw.3).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13920372
title: cao2022

description: 60 annotated images of ants in a Petri dish. Images are an unmodified subset from "ANTS--ant detection and tracking" (10.17632/9ws98g4npw.3).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13919716
title: ArTaxOr

description: 1050 annotated images of insects in a natural habitats. Images are unmodified from "Arthropod Taxonomy Orders Object Detection Dataset" (10.34740/kaggle/dsv/1240192).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13919717
title: ArTaxOr

description: 1050 annotated images of insects in a natural habitats. Images are unmodified from "Arthropod Taxonomy Orders Object Detection Dataset" (10.34740/kaggle/dsv/1240192).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13919601
title: amarathunga2022

description: 550  annotated images of insects in a Petri dish.Images are unmodified from "Image dataset of two morphologically close thrip species: Western Flower Thrips and Plague Thrips" (https://doi.org/10.26180/21547650.v3).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13919602
title: amarathunga2022

description: 550  annotated images of insects in a Petri dish.Images are unmodified from "Image dataset of two morphologically close thrip species: Western Flower Thrips and Plague Thrips" (https://doi.org/10.26180/21547650.v3).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13919485
title: ALUS

description: 352 annotated images of insects in a Petri dish. Images are unmodified from "subsamples of ALUS Southern Ontario Insects" (https://doi.org/10.5683/SP2/LMRVFN).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13919486
title: ALUS

description: 352 annotated images of insects in a Petri dish. Images are unmodified from "subsamples of ALUS Southern Ontario Insects" (https://doi.org/10.5683/SP2/LMRVFN).

Each insect is annotated as a polygon.Annotations are contained in JSON file:  `instances_default.json` in the COCO format.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13992495
title: ubc-pitfall-traps

description: This dataset comprises over 150 pitfall trap samples collected from June to December 2023 at the University of British Columbia (UBC) Farm. These samples were gathered by students and technicians from the Plant-Insect Ecology and Evolution (PIEE) Lab as part of a larger project investigating the effects of artificial light at night (ALAN) on flying insects and ground-dwelling arthropods. They were collected under three different lighting conditions (white, amber, and control/darkness). Each filename encodes information about the sample as follows: [starting date of 5-day collection period]_[site number]_[amber, white, or control (off) light]_[direction sticky card is facing]. Pitfall trap samples were scanned using an EPSON Perfection V600 Scanner by PIEE Lab students and technicians.

Each insect is annotated as a polygon.Annotations are contained, as polygons in COCO format, in `instances_default.json`.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.5281/zenodo.13992496
title: ubc-pitfall-traps

description: This dataset comprises over 150 pitfall trap samples collected from June to December 2023 at the University of British Columbia (UBC) Farm. These samples were gathered by students and technicians from the Plant-Insect Ecology and Evolution (PIEE) Lab as part of a larger project investigating the effects of artificial light at night (ALAN) on flying insects and ground-dwelling arthropods. They were collected under three different lighting conditions (white, amber, and control/darkness). Each filename encodes information about the sample as follows: [starting date of 5-day collection period]_[site number]_[amber, white, or control (off) light]_[direction sticky card is facing]. Pitfall trap samples were scanned using an EPSON Perfection V600 Scanner by PIEE Lab students and technicians.

Each insect is annotated as a polygon.Annotations are contained, as polygons in COCO format, in `instances_default.json`.Images were annotated by hand or semi-automatically (e.g., using Segment Anything).
DOI: 10.15468/dl.z8q22j
title: Occurrence Download

description: A dataset containing 23360 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea calcitrapa L."
 ]
}

 The dataset includes 23360 records from 488 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086343-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5rrqy6
title: Occurrence Download

description: A dataset containing 2272076 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN, VU, NT, LC)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year is 2019"
 ]
}

 The dataset includes 2272076 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086120-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqhg1b
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "TaxonKey is Moehringia jankae Griseb. ex Janka",
 "TaxonKey is Moehringia lateriflora (L.) Fenzl",
 "TaxonKey is Moehringia tejedensis Willk.",
 "TaxonKey is Moehringia tommasinii Marches.",
 "TaxonKey is Moehringia villosa (Wulfen) Fenzl",
 "TaxonKey is Monizia edulis Lowe",
 "TaxonKey is Murbeckiella pinnatifida subsp. herminii (Rivas Mart.) Greuter & Burdet",
 "TaxonKey is Murbeckiella sousae Rothm.",
 "TaxonKey is Muscari gussonei (Parl.) Tod.",
 "TaxonKey is Musschia aurea (L.f.) Dumort.",
 "TaxonKey is Musschia wollastonii Lowe",
 "TaxonKey is Myosotis azorica H.C.Watson ex Hook.",
 "TaxonKey is Myosotis lusitanica R.Schust.",
 "TaxonKey is Myosotis maritima Hochst. ex Seub.",
 "TaxonKey is Myosotis rehsteineri (Hausm.) Wartm. ex Reut.",
 "TaxonKey is Najas flexilis (Willd.) Rostk. & W.L.E.Schmidt",
 "TaxonKey is Najas tenuissima (A.Braun ex Magnus) Magnus",
 "TaxonKey is Narcissus assoanus subsp. praelongus Barra & G.López",
 "TaxonKey is Narcissus calcicola Mendonça",
 "TaxonKey is Narcissus jonquilla subsp. fernandesii (Pedro) Zonn.",
 "TaxonKey is Narcissus juncifolius Salisb.",
 "TaxonKey is Narcissus scaberulus Henriq.",
 "TaxonKey is Nepeta argolica subsp. dirphya (Boiss.) Strid & Kit Tan",
 "TaxonKey is Nepeta dirphya Heldr. ex Boiss., 1879",
 "TaxonKey is Nepeta sphaciotica P.H.Davis"
 ]
 }
 ]
}

 The dataset includes 168 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014767-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9anhr
title: Occurrence Download

description: A dataset containing 5655 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acer davidii Franch.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5655 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034939-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwsblu
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xylosandrus compactus (Eichhoff, 1875) Eichhoff, 1875",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 21 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060146-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqxfjw
title: Occurrence Download

description: A dataset containing 117692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Adoxa moschatellina L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 117692 records from 674 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035032-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8r8t5t
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cyathea kalbreyeri (Baker) Domin"
 ]
}

 The dataset includes 79 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019059-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gdcnab
title: Occurrence Download

description: A dataset containing 8367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "TaxonKey is Oenanthe conioides Garcke ex Junge",
 "TaxonKey is Oenanthe divaricata E.Simon, 1903",
 "TaxonKey is Omphalodes kuzinskyanae Willk.",
 "TaxonKey is Omphalodes littoralis Lehm.",
 "TaxonKey is Ononis hackelii Lange",
 "TaxonKey is Ononis maweana Ball",
 "TaxonKey is Onosma tornensis Javorka, 1906",
 "TaxonKey is Ophrys argolica H.Fleischm.",
 "TaxonKey is Ophrys kotschyi H.Fleischm. & Soó",
 "TaxonKey is Ophrys lunulata Parl.",
 "TaxonKey is Ophrys ×melitensis (Salk.) Devillers-Tersch. & Devillers",
 "TaxonKey is Orchis scopulorum Summerh.",
 "TaxonKey is Origanum dictamnus L.",
 "TaxonKey is Paeonia clusii subsp. rhodia (Stearn) Tzanoud.",
 "TaxonKey is Paeonia officinalis subsp. banatica (Rochel) Soó",
 "TaxonKey is Paeonia parnassica Tzanoud.",
 "TaxonKey is Palaeocyanus crassifolius (Bertol.) Dostál",
 "TaxonKey is Papaver laestadianum (Nordh.) Nordh.",
 "TaxonKey is Papaver radicatum Rottb.",
 "TaxonKey is Pedicularis sudetica Willd.",
 "TaxonKey is Persicaria foliosa (H.Lindb.) Kitag.",
 "TaxonKey is Petagnia saniculifolia Guss.",
 "TaxonKey is Phagnalon bennettii Lowe ex DC.",
 "TaxonKey is Phagnalon hansenii Qaiser & Lack",
 "TaxonKey is Phagnalon saxatile (L.) Cass."
 ]
 }
 ]
}

 The dataset includes 8367 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014768-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mny7qv
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hereroa hesperantha (Dinter) Dinter & Schwantes"
 ]
}

 The dataset includes 51 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019102-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzbugb
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Manis javanica Desmarest, 1822, Manis pentadactyla Linnaeus, 1758)",
 "Country is China",
 "HasCoordinate is true",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034626-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.