cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22699408.v1
title: SPRING-dependent regulation of hepatic SREBP signaling governs systemic lipid metabolism in mice and humans - raw proteomics files

description: The sterol regulatory element binding proteins (SREBPs) are transcription factors that govern cholesterol and fatty acid metabolism. Owing to their central role in hepatic lipid and lipoprotein metabolism their activity is tightly coordinated, and accordingly, dysregulation of the SREBP pathway is associated with the development of, amongst others, cardiovascular and non-alcohol fatty liver disease. Constitutive or inducible global ablation of <em>Spring </em>in mice is lethal, and therefore to interrogate the physiological role of SPRING in hepatic lipid metabolism we developed liver-specific <em>Spring </em>knockout mice (LKO). In the liver of those mice, shotgun proteomics was assessed in n=6 (pooled together n=3 for each genotype) and injected twice in Dionex Ultimate 3000 nano-LC system (Sunnyvale CA, USA) connected to an orbitrap Fusion™ Tribrid™ Mass Spectrometer (Thermo Scientific, Bremen, Germany) equipped with a nano-electrospray ion source operating in positive ion mode. <br> <br>
DOI: 10.6084/m9.figshare.24902889.v4
title: Data Science for Environmental Justice PBL Module: Air Pollution Dataset

description: This is a PBL module on Air Pollution to be used in an introductory environmental science course to motivate students to analyze related environmental justice issues.US EPA data on "State EJScreen Data at the Block Group Level" (EJSCREEN_2023_BG_StatePct_with_AS_CNMI_GU_VI.csv) was downloaded from https://www.epa.gov/ejscreen/download-ejscreen-data on December 20, 2023.This data was processed/cleaned using the included R script - major changes (see the R script for full changes):The dataset was subset for the state of North Carolina.Only a subset of the variables were retained.Any row with missing information was removed. This reduced the number of rows, for North Carolina, from 7111 to 6494.Columns with percent values were converted from decimals to percentages.An additional, summarized dataset, summarized by county, is provided: we report the sum for ACSTOTPOP, AREALAND, and AREAWATER, and the mean for the other variablesThe data dictionary is included.PBL Module: TBAInstructor Notes: TBAThe following files are included:Data Dictionary: Data_Dictionary_EJSCREEN_2023_BG_Columns.pdfProcessed Dataset for North Carolina: DS4EJ_EJScreen_State_BGLevel_NC.csvSummarized Dataset for North Carolina (summarized by county): DS4EJ_EJScreen_State_BGLevel_NC_Summarized_By_County.csvR Script for Data Processing: DSEJ_data_cleaning_EJSCREEN.rOriginal Dataset from which Data was Extracted for North Carolina: DS4EJ_EJSCREEN_2023_BG_StatePct_with_AS_CNMI_GU_VI.csv<br>
DOI: 10.17632/sfjt24mwb4
title: Characteristics and Management of Sclerosing Skin Diseases Arising During Immune Checkpoint Inhibitor Therapy: An Evidence-Based Review

description: Immune checkpoint inhibitors (ICI) are well-established for use in several cancers such as melanoma. Nonetheless, recent literature has increasingly described the onset of sclerosing skin disease (SSDs) during ICI therapy. This systematic review examines evidence regarding this phenomenon.
DOI: 10.17632/yfw8786fgz
title: A Framework for Evaluating Renewable Energy for Decision-Making Integrating a Hybrid FAHP-TOPSIS Approach: A Case Study in Valle del Cauca, Colombia

description: Abstract: At present, the energy landscape of many countries faces transformational challenges driven by sustainable development objectives, supported by the implementation of clean technologies, such as renewable energy sources, to meet the flexibility and diversification needs of the traditional energy mix. However, integrating these technologies requires a thorough study of the context in which they are developed. Furthermore, it is necessary to carry out an analysis from a sustainable approach that quantifies the impact of proposals on multiple objectives established by stakeholders. This article presents a framework for analysis that integrates a method for evaluating the technical feasibility of resources for photovoltaic solar, wind, small hydroelectric power, and biomass generation. These resources are used to construct a set of alternatives and are evaluated using a hybrid FAHP-TOPSIS approach. FAHP-TOPSIS is used as a comparison technique among a collection of technical, economic, and environmental criteria, ranking the alternatives considering their level of trade-off between criteria. The results of a case study in Valle del Cauca (Colombia) offer a wide range of alternatives and indicate a combination of 50\% biomass, and 50\% solar as the best, assisting in decision-making for the correct use of available resources and maximizing the benefits for stakeholders.

The provided data includes historical information on renewable generation resources in Jamundí, Valle del Cauca, CO. This information has been obtained from publicly available databases, aggregated from PowerNasa tools, the Institute of Hydrology, Meteorology, and Environmental Studies (IDEAM), and the Colombian Agricultural Institute.  Additional available data: stakeholders survey, indicator data, and obtained results.

The processing of this information was carried out using a module developed in Python. For more information, please contact the author or visit https://github.com/MateoBarrera.
DOI: 10.6084/m9.figshare.11474016.v4
title: The Draft Genome Datasets of the Asian Cricket, Teleogryllus occipitalis, for the Basis of Molecular Research toward Entomophagy

description: Structural and functional annotation of Asian field cricket <i>T. occipitalis</i> gene model
DOI: 10.6084/m9.figshare.12915866.v1
title: Revised Comtrade data for PPE

description: UN Comtrade data on imports and exports of PPE, specifically face masks, eye protection, and gloves.<br>2019 data are unavailable for China and "Other Asia nes," meaning other territories in Asia not elsewhere specified. In this dataset 2019 values for China and Other Asia nes are replaced by their 2018 values.
DOI: 10.6084/m9.figshare.4239452.v1
title: The aDoctor Project

description: Code smells are symptoms of poor design solutions applied by programmers during the development of software systems. While the research community devoted a lot of effort in studying and devising approaches for detecting the traditional code smells defined by Fowler, a little knowledge and support is available for an emerging category of Mobile app code smells. Specifically, Reimann et al. recently proposed a new catalogue of Android-specific code smells that may threat the maintainability and the efficiency of Android applications. Existing tools working in the context of Mobile apps provide limited support and, more importantly, are not available for developers interested in monitoring the quality of their apps. To overcome these limitations, we propose a fully automated tool, coined as aDoctor , able to identify 15 Android-specific code smells from the catalogue by Reimann et al. An empirical study conducted on the source code of 18 Android applications reveal that the proposed tool is highly performant and reaches, on average, 98% of precision and 98% of recall. We made aDoctor publicly available.
DOI: 10.6084/m9.figshare.11743749.v1
title: BiEntropy_TriEntropy_and_Primality.zip

description: This zip file contains the full set of spreadsheet *.xls files used to do the analytics and graphics of the ArXiv 1912.08051 paper "BiEntropy, TriEntropy and Primality".
DOI: 10.6084/m9.figshare.14882322.v5
title: A global dataset of seaweed net primary productivity

description: This global dataset contains a compilation of NPP records for 242 seaweed species at 419 individual sites distributed on all continents from the intertidal to 55 m depth. All records are standardized to annual aerial carbon production (g C m<sup>-2</sup> yr<sup>-1</sup>) and are accompanied by detailed taxonomical and methodological information. The dataset provides a basis for local, regional and global comparative studies of the NPP of underwater vegetation, and is pivotal for achieving a better understanding of the role seaweeds play in the global coastal carbon cycle.
DOI: 10.17632/f4k2gytbh5
title: Genome-Wide Detection of Imprinted Differentially Methylated Regions Using Nanopore Sequencing_Akbari-etal

description: This zip file includes histone modifications and DNA methylation track files created in our work "Genome-Wide Detection of Imprinted Differentially Methylated Regions Using Nanopore Sequencing".
DOI: 10.21942/uva.19646364.v3
title: AHEAD quantitative MRI templates (MNI2009b)

description: Group template of R1, R2*, QSM and derived myelin and iron maps for the AHEAD database, co-registered to MNI2009b space (note that the voxel data is stored in RPS, not RAS). Maps include the population median ('med') and inter-quartile range ('iqr').
DOI: 10.6084/m9.figshare.11650734.v4
title: STAN: Towards Describing Bytecodes of Smart Contract

description: (1). 202,995 different function bytes signatures, and their corresponding text signatures.<br>(2). 12,993 different function text signatures, and their corresponding general descriptions generated through TextRank model.<br>(3). 115 different function text signatures and their general descriptions generated through ERCDoc analysis.<br>BibTeX citation:@inproceedings{li2020stan, title={STAN: Towards Describing Bytecodes of Smart Contract}, author={Li, Xiaoqi and Chen, Ting and Luo, Xiapu and Zhang, Tao and Yu, Le and Xu, Zhou}, booktitle={Proceedings of the 20th IEEE International Conference on Software Quality, Reliability and Security }, year={2020}}
DOI: 10.6084/m9.figshare.8236451.v1
title: aFARP-ChIP-seq, a convenient and reliable method for genome profiling in as few as 100 cells with a capability for multiplexing ChIP-seq

description: Much effort has been devoted to understand how chromatin modification regulates development and disease. Despite recent progress, however, it remains difficult to obtain high-quality epigenomic maps using chromatin-immunoprecipitation-coupled deep sequencing (ChIP-seq) in samples with low-cell numbers. Here, we present an Atlantis dsDNase-based technology, aFARP-ChIP-seq, that provides accurate profiling of genome-wide histone modifications in as few as 100 cells. By mapping histone lysine trimethylation (H3K4me3) and acetylation (H3K27Ac) in group I innate lymphoid cells (ILC1) sorted from different tissues in parallel, aFARP-ChIP-seq uncovers putative active promoter and enhancer landscapes of several tissue-specific Natural Killer cells (NK) and ILC1. aFARP-ChIP-seq is also highly effective in mapping transcription factor binding sites in small number of cells. Thus, aFARP-ChIP-seq offers multiplexing mapping of both epigenome and transcription factor binding sites using a small number of cells.
DOI: 10.17632/ddwmh85yhs
title: Data for: The Relationship between Facial Fractures and Socioeconomic Deprivation in the North East of England

description: This data set contains information on all facial fractures treated by the OMFS team at Sunderland Royal Hospital between December 2013 and December 2018. This data also contains informaton on each patients socioeconomic deprivation as obtained from 'The OpenData Communities Database', information on fracture aetiology and substance abuse.
DOI: 10.6084/m9.figshare.26124637.v1
title: <b>RANKING DE INVESTIGADORAS (ELLAS) ESPAÑOLAS Y EXTRANJERAS EN ESPAÑA SEGÚN PERFILES PÚBLICOS DE GOOGLE SCHOLA</b>R

description: Ranking of the top Spanish female researchers according to their public profile in Google Scholar with data from the end of June 2024.GS, ORCID and RoR identifiers are provided when available
DOI: 10.6084/m9.figshare.29048579.v1
title: A Completed PRISMA 2020 Checklist and Flowchart

description: This is a checklist of the research paper titled "Strategic Alignment of Organizational Structure Based on Decisions for Sustainable Organizational Performance: A Bibliometric-Systematic Literature Review."
DOI: 10.6084/m9.figshare.3382477.v1
title: Micro-CT and surface mesh of bird eggshells

description: Microcomputed tomography (micro-CT) data) used to generate 3D surface models to quantify egg shape in four Australian bird species (four clutches per sp.): the grey shrike-thrush <i>Colluricincla harmonica</i>, red-browed finch <i>Neochmia temporalis</i>, spiny-cheeked honeyeater <i>Acanthagenys rufogularis</i> and superb fairy-wren <i>Malurus cyaneus. </i> This dataset contains micro-CT scans of 55 bird eggshells and their corresponding surface mesh in DICOM and PLY format, respectively. The READ ME.txt file in the DICOM folder contains all parameters used for scanning and image reconstruction of each DICOM. Scanning was completed at the Australian National Wildlife Collection, Canberra using a compact desktop micro-CT scanner (SkyScan 1174, Bruker micro-CT, Kontich, Belgium). For further details on the methodology, please refer to Attard et al. (In review) A new, three-dimensional geometric morphometric approach to assess egg shape. PeerJ.
DOI: 10.6084/m9.figshare.5417560.v1
title: Welfare Changes from Agricultural Yield Shocks for 1-3 Degrees of Global Warming (AgMIP, Preferred Ensemble)

description: Shape file with 140 GTAP regions giving welfare changes for 1-3 degrees of warming. Three values are given for each level of warming - the central estimate (50th percentile) and the upper (97.5th percentile) and lower (2.5th percentile) bounds of the 95% confidence interval. The column "VOM" gives the total value of the shocked sectors for that region, used to normalize the welfare changes to give % change, as reported in Moore et al (in press).<br>Welfare changes are equivalent variation and are based on yield shocks derived from averaging AgMIP Global Gridded Crop Model Intercomparison results (Rosenzweig et al 2014). Data are available from the ISIMIP Fast Trak project page: https://esg.pik-potsdam.de/projects/isimip-ft/ and were analyzed according to methods reported in Moore et al (in press). The results here are for a preferred ensemble of crop models, excluding the ones that do not explicitly represent nitrogen stress. <br>Moore, F. C., Baldos, U., Hertel, T. W. & Diaz, D. New Science of Climate Change Impacts on Agriculture Implies Higher Social Cost of Carbon. Nat. Commun.<br><br>Rosenzweig, C., Elliott, J., Deryng, D., Ruane, A. C., Müller, C., Arneth, A., Boote, K. J., Folberth, C., Glotter, M., Khabarov, N., Neumann, K., Piontek, F., Pugh, T. A. M., Schmid, E., Stehfest, E., Yang, H. & Jones, J. W. Assessing agricultural risks of climate change in the 21st century in a global gridded crop model intercomparison. Proc. Natl. Acad. Sci. U. S. A. 111, 3268–73 (2014).<br><br><br>
DOI: 10.6084/m9.figshare.18550976.v1
title: Conjoint analysis of MeRIP-seq and RNA-seq

description: The correlation analysis was designed to find overlaps between m6A difference genes identified by MeRIP-seq and the expression difference genes identified by RNA-seq
DOI: 10.6084/m9.figshare.21702068.v1
title: Segmentation Dataset

description: Dataset used in the paper "Cell Segmentation in Images Without Structural Fluorescent Labels" by Daniel Zyss & al.
DOI: 10.6084/m9.figshare.26135767.v1
title: <b>Structural Insights into the High Basal Activity and Inverse Agonism of the Orphan GPR6 Receptor Implicated in Parkinson’s Disease</b>

description: Supporting mass spectra for "Structural Insights into the High Basal Activity and Inverse Agonism of the Orphan GPR6 Receptor Implicated in Parkinson’s Disease" by Barekatain et al.
DOI: 10.6084/m9.figshare.27316062.v1
title: Data and R codes for "Meta-analysis reveals global variations in plant diversity effects on productivity"

description: # Diversity-effectData and R codes for global plant diversity effects<br>R_ALL included all codes for statistical analyses in this study.Data and code files showed the analyses separately for each figure and table.
DOI: 10.6084/m9.figshare.28602446.v1
title: Research data.zip

description: The characteristics of soil erosion and sediment transport can help identify key areas of erosion and sediment yield within a watershed. However, the mechanisms by which vegetation cover and terrace measures influence soil erosion and sediment transport remain unclear. Additionally, the coupling and decoupling effects induced by soil erosion and sediment transport are not clearly described. In this study, the revised universal soil loss equation (RUSLE) and the index of connectivity (IC) were used to visually assess the temporal and spatial variations in soil erosion and sediment transport processes in response to changes in the underlying surface of the Luoyugou watershed from 1986 to 2018. Additionally, the covariation relationship between soil erosion and sediment connectivity was analyzed. The results showed that, driven by a significant increase in vegetation cover and terrace area, soil erosion and IC exhibited a significant decreasing trend from 1986 to 2018 (P&lt;0.01). The area classified as low erosion–low connectivity, which aligns with reduced soil erosion and sediment connectivity, increased from 38.7% to 90.9%. In contrast, the high erosion–high connectivity areas, which are critical for soil erosion control, decreased from 17% to just 0.81%, mainly distributed on steep slopes without forest cover. In areas with severe erosion, there is extensive decoupling (37.8%) of soil erosion and sediment connectivity, while vegetation cover and terraces can reduce the occurrence of decoupling. Overall, vegetation change was the dominant factor in reducing sediment connectivity, accounting for 82.7% of the total contribution, while terraces contributed 17.3%. Determining the relationship between sediment connectivity and soil erosion can identify erosion hotspots within watersheds and provide critical information for watershed management.
DOI: 10.17632/53x4c4sfw4
title: SUPPLEMENTARY MATERIALS

description: SUPPLEMENTARY MATERIALS

Supplemental Table 1: Characteristics of the cohort undergoing nodal evaluation (n=6,417)
DOI: 10.6084/m9.figshare.14524326.v1
title: Dataset for study on pesticide exposure and rhinitis in Phitsanulok Thailand

description: This dataset contains all data for study on pesticide exposure and rhinitis<br>
DOI: 10.6084/m9.figshare.2056305.v1
title: Bone Marrow Hematoxylin&Eosin Dataset

description: This dataset contains 11 1,200x1,200 pixel images of Hematoxylin-Eosin stained human bone marrow, scanned at 40x magnification using an Aperio whole slide scanner at the Institute of Pathology, Medical University of Graz, Austria. In total, it contains 4,205 dot annotations on centers of cells or 'unknown' objects.<br>It was made publicly available as part of the MICCAI 2015 paper on cell localization:<br>P. Kainz, M. Urschler, S. Schulter, P. Wohlhart, and V. Lepetit. You should use regression to detect cells. In A. F. Frangi, J. Hornegger, N. Navab, and S. Wells, editors, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015, Lecture Notes in Computer Science, Munich, Germany, Oct. 5-9 2015. Springer.<br><b>Conditions of use</b>You are welcome to you use the bone marrow dataset in your work, but please make sure to include our paper in your citations.<br>
DOI: 10.6084/m9.figshare.24031809.v3
title: <b>City-Level Overture Global Places Dataset</b>

description: This dataset is built from the Overture 2023-07-26-alpha.0 version of open map data by the Overture Maps Foundation. This dataset compiles points of interests (POIs) for individual cities for convenient and lightweight spatial sampling.Credits: Overture Maps FoundationLicense: https://cdla.dev/permissive-2-0/
DOI: 10.17632/5vgtdn5d93
title: Effect of Chemical Structure and Apparent Density of Rigid

description: The aim of this work was to synthesize polyurethane foams based on petrochemical polyols and biopolyols with specific apparent densities (40, 60, 80, 100, and 120 kg/m3), test their properties, glycolyze them, and finally analyze each glycolyzed product. The petroleum-based foams, used as reference foams, and the bio-based foams underwent a series of standard tests to define their properties (the content of closed cells 20–95%, compressive strength 73–1323 kPa, thermal conductivity 24–42 mW/m∙K, brittleness 4.6–82.9%, changes in linear dimensions &lt; 1%, and water absorption &lt; 1%). Taking into account the need for recycling, the foams were shredded and then glycolyzed by diethylene glycol, with the addition of a catalyst in the form of potassium hydroxide. The chemolysis products were analyzed through determination, i.e., the amine and the hydroxyl values, viscosity, and molecular weight. The obtained rebiopolyols had hydroxyl numbers ranging from 476 to 511 mg KOH/g. The type of biopolyol used in the PUR foam systems had a significant impact on the amine number and the viscosity of the obtained rebiopolyol.
DOI: 10.6084/m9.figshare.28921229.v1
title: Data from: Threatened pollinator and plant species in megadiverse countries: what we have learned from a synthesis of interactions for Brazil

description: Plant-pollinator interactions are essential for the reproduction of most flowering plants and the maintenance of biodiversity. With each new assessment of threat status, new plants and pollinators are included in the list of threatened species. However, the ecological interactions established by threatened plants and pollinators are largely unknown. To support conservation planning for threatened plants and pollinators, we surveyed interactions for the plant and pollinator species listed in the official threatened species lists for Brazil. We found data on plant-pollinator interactions for less than 30% of the species listed as threatened. From what is known, abundant species with generalist characteristics play a central role in the interaction meta-network of threatened species. This information can be used to promote better actions for their conservation. Nevertheless, more efforts are required to focus on pollination interactions of threatened animals and plants. We highlight and discuss the relevance of exotic species such as <i>Apis mellifera</i> and <i>Lantana camara</i> in our set of mapped interactions. We conclude that the data synthesized here can support actions for the long-term maintenance of threatened species and the functioning of ecosystems.
DOI: 10.6084/m9.figshare.1577546.v1
title: Melanoma Microarray Processed Datasets

description: The Zip file contains processed data generated for Network-rewiring analysis for Melanoma microarray datasets from different stages of the cancer progression.
DOI: 10.6084/m9.figshare.21777083.v1
title: Data from: Synthesis on the effectiveness of soil translocation for plant community restoration

description: The dataset records the vascular vegetation responses in soil translocation field experiments designed for nature restoration or rescue. <br> One file (plot data.xlsx) stores the observation level data (individual plots, often over several years), while the other (Data S1.xlsx) stores the experiment level meta-data. Both files have give a description of the variables included and their units.
DOI: 10.6084/m9.figshare.24979947.v1
title: Building facade images for classifying building stories and identifying building typologies

description: The study, titled 'Effectiveness of Image Augmentation Techniques on Detection of Building Characteristics from Street View Images Using Deep Learning,' This paper investigates the impact of eight distinct image augmentation techniques—Brightness, Contrast, Perspective, Rotate, Scale, Shear, Translate, and a combined method termed 'A Sum of Techniques'—on two specific tasks: classifying building stories and identifying building typologies. The primary aim of this research is to enhance accuracy in these tasks using the aforementioned augmentation techniques. Additionally, this study emphasizes reproducibility of the proposed methods. All images used in the research were annotated specifically for the classification task.
DOI: 10.6084/m9.figshare.14776326.v1
title: OnClass_data_public_Pretrained_model

description: Dataset for OnClass