cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.783zu8
title: Occurrence Download

description: A dataset containing 3070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-7.57466 35.87748,-0.50294 35.87748,-0.50294 39.77956,-7.57466 39.77956,-7.57466 35.87748))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Gambusia holbrooki Girard, 1859"
 ]
}

 The dataset includes 3070 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037511-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3599546_d1.v1
title: MOESM2 of Enhancing full-length antibody production by signal peptide engineering

description: Additional file 2: Table S2. Strains and plasmids used in this study.
DOI: 10.6084/m9.figshare.c.3599552_d1.v1
title: Additional file 2: Table S1. of Human newborn bacille Calmetteâ  GuĂŠrin vaccination and risk of tuberculosis disease: a case-control study

description: Number of genes differentially expressed between cases and controls from the primary cohort. Column B shows this analysis when all infants were included, whereas the other two columns show analysis with cluster 1 and cluster 2 infants included, respectively. A non-FDR adjusted p value cutoff of 0.05 and a fold change absolute value of 1.3 was used to define differential expression. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3599501_d9.v1
title: Additional file 6: Table S4. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

description: List of low confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF11217 by WGS. (XLS 345Â kb)
DOI: 10.6084/m9.figshare.c.3599552_d2.v1
title: Additional file 3: Table S2. of Human newborn bacille Calmetteâ  GuĂŠrin vaccination and risk of tuberculosis disease: a case-control study

description: Genes differentially expressed between cluster 1 and cluster 2 infants from the primary cohort. Gene expression was calculated by subtracting expression in PBMC incubated with medium alone from expression in PBMC incubated with BCG. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3599552_d3.v1
title: Additional file 6: Table S5. of Human newborn bacille Calmetteâ  GuĂŠrin vaccination and risk of tuberculosis disease: a case-control study

description: Unique and shared gene expression pathways in each of four groups from the primary cohort: a group of cases and controls within each of the two clusters. Gene expression was from PBMC incubated with medium alone. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3599546_d3.v1
title: MOESM1 of Enhancing full-length antibody production by signal peptide engineering

description: Additional file 1: Table S1. The DNA sequences of the signal peptide TIR variants and the relative TIR strengths.
DOI: 10.6084/m9.figshare.c.3599552_d4.v1
title: Additional file 7: Table S6. of Human newborn bacille Calmetteâ  GuĂŠrin vaccination and risk of tuberculosis disease: a case-control study

description: Unique and shared gene expression pathways in each of four groups from the validation cohort: a group of cases and controls within each of the two clusters. Gene expression was from PBMC incubated with medium alone. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3599552_d5.v1
title: Additional file 4: Table S3. of Human newborn bacille Calmetteâ  GuĂŠrin vaccination and risk of tuberculosis disease: a case-control study

description: Genes differentially expressed between cluster 1 and cluster 2 infants from the secondary cohort. Gene expression was calculated by subtracting expression in PBMC incubated with medium alone from expression in PBMC incubated with BCG. (XLSX 358 kb)
DOI: 10.6084/m9.figshare.c.3599501_d11.v1
title: Additional file 7: Table S5. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

description: List of high confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF10547 by WGS. (XLS 294Â kb)
DOI: 10.6084/m9.figshare.c.3599552_d6.v1
title: Additional file 5: Table S4. of Human newborn bacille Calmetteâ  GuĂŠrin vaccination and risk of tuberculosis disease: a case-control study

description: GSEA analysis of differentially expressed genes in cluster 1 and cluster 2 infants from the primary cohort. Gene expression was calculated by subtracting expression in PBMC incubated with medium alone from expression in PBMC incubated with BCG. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3599501_d13.v1
title: Additional file 2: Table S1. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

description: Chromosomal locations of NF11217 TAIL-PCR FSTs recovered from R0, R1 and BC1F2 generations. (XLS 53Â kb)
DOI: 10.6084/m9.figshare.c.3599582_d1.v1
title: Additional file 5: of A transcriptome approach towards understanding the development of ripening capacity in ‘Bartlett’ pears (Pyrus communis L.)

description: Enriched functional groups in each cluster and enrichment analysis. * Fisher’s test with Bonferroni correction (p-value ≤0.05). (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3599582_d2.v1
title: Additional file 4: of A transcriptome approach towards understanding the development of ripening capacity in â  Bartlettâ   pears (Pyrus communis L.)

description: Mapman classification of gene in the de novo transcriptome. (XLSX 5656Â kb)
DOI: 10.6084/m9.figshare.c.3599681_d3.v1
title: Additional file 2: Table S2. of miR-27b shapes the presynaptic transcriptome and influences neurotransmission by silencing the polycomb group protein Bmi1

description: Differentially-expressed presynaptic genes in miR-27b KD (A) and Dicer1 cKO (B) neurons. (nCounter dataset). (XLSX 73Â kb)
DOI: 10.6084/m9.figshare.c.3599693_d2.v1
title: Additional file 9: Table S4. of Shared and divergent pathways for flower abscission are triggered by gibberellic acid and carbon starvation in seedless Vitis vinifera L

description: Heat map illustrating metabolite changes in response to GAc and shade treatments. The abbreviations GAc5d, GAc7d, SH5d and SH7d mean the log2 fold-change between metabolite relative content obtained in treated and control inflorescences, at 5 and 7 days after 100 % cap fall. Red and green shaded cells indicate p-value ≤ 0.05. Light red and light green shaded cells indicate 0.05
DOI: 10.6084/m9.figshare.c.3599693_d3.v1
title: Additional file 12: Table S6. of Shared and divergent pathways for flower abscission are triggered by gibberellic acid and carbon starvation in seedless Vitis vinifera L

description: List of GO enriched categories in each pair-wise comparison. Enrichment analysis was performed using R bioconductor topGO package with Fisher's exact test and p-value ≤ 0.01. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3599693_d4.v1
title: Additional file 3: Table S1. of Shared and divergent pathways for flower abscission are triggered by gibberellic acid and carbon starvation in seedless Vitis vinifera L

description: Reference library of chemical standard used for LC/MS/MS analysis. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3599699_d3.v1
title: Additional file 12: Table S6. of Promoter-based identification of novel non-coding RNAs reveals the presence of dicistronic snoRNA-miRNA genes in Arabidopsis thaliana

description: List of primers and hybridization probes used in the experiments. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3599681_d5.v1
title: Additional file 10: Table S7. of miR-27b shapes the presynaptic transcriptome and influences neurotransmission by silencing the polycomb group protein Bmi1

description: List of DNA primers used in this study. (XLSX 11Â kb)
DOI: 10.5281/zenodo.10691687
title: Battery & hydrogen circular economy simulation data

description: The dataset contains: The simulation environment and results of the building-transportation energy sharing model, including meteorological data, renewable energy system configuration, grid energy structure data, energy balance data of both battery and hydrogen system, battery degradation data, and the fuel cell&electrolyzer degradation data. The data set also includes the calculation process and results of net present value and carbon intensity of both battery and hydrogen system based on the above data.
DOI: 10.5281/zenodo.10691919
title: Battery & hydrogen circular economy simulation data

description: The dataset contains: The simulation environment and results of the building-transportation energy sharing model, including meteorological data, renewable energy system configuration, grid energy structure data, energy balance data of both battery and hydrogen system, battery degradation data, and the fuel cell&electrolyzer degradation data. The data set also includes the calculation process and results of net present value and carbon intensity of both battery and hydrogen system based on the above data.
DOI: 10.5281/zenodo.14505257
title: Battery & hydrogen circular economy simulation data

description: The dataset contains: The simulation environment and results of the building-transportation energy sharing model, including meteorological data, renewable energy system configuration, grid energy structure data, energy balance data of both battery and hydrogen system, battery degradation data, and the fuel cell&electrolyzer degradation data. The data set also includes the calculation process and results of net present value and carbon intensity of both battery and hydrogen system based on the above data.
DOI: 10.6084/m9.figshare.c.3599699_d4.v1
title: Additional file 1: Table S1. of Promoter-based identification of novel non-coding RNAs reveals the presence of dicistronic snoRNA-miRNA genes in Arabidopsis thaliana

description: List of Arabidopsis mRNA genes containing Telo-box and Site II elements in 1kb upstream of TSS. (XLSX 134 kb)
DOI: 10.5523/bris.39wtcv1qdq5xq2misej9ngulvm
title: DNA origami data and software
title: DNA origami

description: This folder contains the experimental data and Python software used to prepare the figures in the main text and supplementary information of the paper entitled 'Ice Nucleation by DNA Origami'.
DOI: 10.6084/m9.figshare.c.3599681_d7.v1
title: Additional file 7: Table S6. of miR-27b shapes the presynaptic transcriptome and influences neurotransmission by silencing the polycomb group protein Bmi1

description: List of up-regulated gene sets in miR-27 KD neurons. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3599693_d8.v1
title: Additional file 11: Table S5. of Shared and divergent pathways for flower abscission are triggered by gibberellic acid and carbon starvation in seedless Vitis vinifera L

description: Enzymatic classification of differentially expressed genes and respective fold-change for each treatment at 5 and 7d. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.28040171
title: polymers-3283519.zip

description: 发泡聚苯乙烯 （EPS） 微粒轻质土壤复合材料是一种密度低、强度高的新型人工土工材料。我们在这个项目中使用了 EPS 胎圈轻质土壤，用粉煤灰代替了部分水泥，以 降低施工成本。EPS 珠子用作轻质材料，水泥和粉煤灰作为生土中的固化剂，制成混合粉煤灰的 EPS 轻质土。EPS 珠子比例分别为 0.5%、1%、1.5% 和 2%;固化剂总含量分别为10%、15%、20%和25%;粉煤灰替代水泥的比例分别为 0%、15%、30%、45% 和 60%。进行了无侧限抗压强度 （UCS） 和扫描电子显微镜 （SEM） 测试。结果表明：EPS含量、总固化剂含量和粉煤灰替代水泥比例对轻质土的UCS有显著影响。随着 EPS 含量的增加和总固化剂含量的降低，这种情况会降低，而随着粉煤灰替代水泥的比例增加，这种情况会降低。当粉煤灰替代水泥比例不太高时，轻质土的强度下降较小，其性能仍满足工程需要。同时，土壤还可以消耗飞灰，减少环境污染。EPS轻质土掺有粉煤灰仍有优点，建议将粉煤灰替代水泥的比例保持在30%以下。轻质土的破坏模式主要包括劈裂破坏、斜剪切破坏和鼓胀破坏，它们与材料配比有关。
DOI: 10.6084/m9.figshare.c.3599723_d3.v1
title: Additional file 4: of Genomic population structure and prevalence of copy number variations in South African Nguni cattle

description: CNVRs distribution across individuals and genes covered. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.c.3599723_d4.v1
title: Additional file 6: of Genomic population structure and prevalence of copy number variations in South African Nguni cattle

description: Tables demonstrating the representation of biological process, molecular function and cellular components by those genes within and or 10Â Mb downstream of CNVRs identified in Nguni cattle. (XLSX 794Â kb)
DOI: 10.6084/m9.figshare.c.3599723_d5.v1
title: Additional file 5: of Genomic population structure and prevalence of copy number variations in South African Nguni cattle

description: a. CNVRs identified in this study and by [5, 29, 30], the number of animals in the study (ANMLs), the breed (BRD), the number of genes (GEN), CNVRs identified by other studies (CNVR SHRD) and number of genes that are unique to the study (UNIQ GEN). b. Comparisons of genes within CNVRs (GEN) identified within this study with those identified within other breeds [5, 29, 30] revealed 402 genes that were unique to the Nguni. (XLSX 17Â kb)
DOI: 10.15468/dl.25xwbz
title: Occurrence Download

description: A dataset containing 3000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ocypode ceratophthalmus (Pallas, 1772))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3000 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037512-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3599723_d6.v1
title: Additional file 7: of Genomic population structure and prevalence of copy number variations in South African Nguni cattle

description: HPB CNVR overlap regions, the number of animals presenting the CNVR and the genes covered in Nguni cattle. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3599723_d7.v1
title: Additional file 2: of Genomic population structure and prevalence of copy number variations in South African Nguni cattle

description: Biological process, molecular function and cellular component representation of those genes covered by HPBs identified in Nguni cattle. (XLSX 939Â kb)
DOI: 10.6084/m9.figshare.c.3599753_d1.v1
title: Additional file 3: of Medicinal plants â   prophylactic and therapeutic options for gastrointestinal and respiratory diseases in calves and piglets? A systematic review

description: Assessment of medicinal plants effects in 418 final peer-reviewed references. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3599759_d1.v1
title: Additional file 1: of Blood miRNomes and transcriptomes reveal novel longevity mechanisms in the long-lived bat, Myotis myotis

description: Contains supplementary Table S1-S11. Table S1. The miRNA precursor sequences and their corresponding mature miRNA sequences predicted from M. myotis blood. Table S2. The unique mature miRNA sequences. Table S3. The novel seed regions identified from the mature miRNA sequences. Table S4. The genomes of selected species used for the identification of bat-specific miRNA, and their mapping results. Table S5. The list of predicted bat-specific miRNA Table S6. The unique enriched GO terms of the targets of the species-specific miRNA (bat, human, pig and cow). Table S7. The summary of the miRNA-Seq data used in this study. Table S8. The summary of the mRNA-Seq data used in this study. Table S9. The list of the predicted species-specific miRNA sequences (human, pig and cow). Table S10. The orthologous miRNA expression data (raw counts) across bat, human, pig and cow. Table S11. The single-copy orthologous gene expression data (raw counts) across bat, human, pig and cow. (XLSX 370Â kb)
DOI: 10.6084/m9.figshare.c.3599768_d1.v1
title: Additional file 9: of Novel microRNA discovery using small RNA sequencing in post-mortem human brain

description: Contains alignment information from good-quality alignments of pairwise alignments of mature sequences of the 99 putative novel miRNAs. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3599807_d1.v1
title: Additional file 1: of Knowledge transfer: what drug information would specialist doctors need to support their clinical practice? Results of a survey and of three focus groups in Italy

description: Questionnaire. Description of data: 24-item questionnaire used for the quantitative survey. (RTF 371 kb)
DOI: 10.6084/m9.figshare.c.3599813_d2.v1
title: Additional file 1: Table S1. of Aberrant DNA methylation profiles of inherited and sporadic colorectal cancer

description: Interphasic FISH results of 37 colorectal cancers. (XLS 40.5 kb)
DOI: 10.6084/m9.figshare.c.3599822_d2.v1
title: Additional file 2: of The effect of dietary resistant starch type 2 on the microbiota and markers of gut inflammation in rural Malawi children

description: 16S rRNA raw reads analyzed in this study.
DOI: 10.6084/m9.figshare.c.3599828_d1.v1
title: Additional file 1: of A randomised controlled trial of sensory awareness training and additional motor practice for learning scalpel skills in podiatry students

description: Title: Grip-Lift test outcomes of interest. Provides an explanation and definition for each of the outcomes analysed as part of the grip-lift test. (ZIP 65 kb)
DOI: 10.6084/m9.figshare.c.3599906_d1.v1
title: Additional file 4: of RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants

description: Prediction results for RLP genes in the Arabidopsis genome. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3599906_d2.v1
title: Additional file 3: of RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants

description: Prediction results for NBS-encoding genes in the Arabidopsis genome. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.c.3599906_d4.v1
title: Additional file 1: of RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants

description: Contents of the RGAdb database. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3599909_d1.v1
title: Additional file 1: of Elucidation of the genetic basis of variation for stem strength characteristics in bread wheat by Associative Transcriptomics

description: Supplementary dataset 1. Mean trait data as inputted into association models is presented for all traits. Both accession names (as referred to in the text) and sequence identifiers (as names in sequence submissions) are given. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3599909_d2.v1
title: Additional file 6: of Elucidation of the genetic basis of variation for stem strength characteristics in bread wheat by Associative Transcriptomics

description: Supplementary dataset 5. Summary of the best SNP and GEM association results. SNP results include p values, effect sizes, and increasing alleles. GEM results include p values, R2 values, and correlation trend (positive or negative). All results are provided with marker chromosome number and most likely candidate genes. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3599906_d5.v1
title: Additional file 5: of RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants

description: Prediction results for RLK genes in the Arabidopsis genome. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3599909_d4.v1
title: Additional file 4: of Elucidation of the genetic basis of variation for stem strength characteristics in bread wheat by Associative Transcriptomics

description: Supplementary dataset 4. Data is provided for the field-based stem lodging risk score, and correlated with the stem strength measurements fmax and MOR. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3599909_d5.v1
title: Additional file 3: of Elucidation of the genetic basis of variation for stem strength characteristics in bread wheat by Associative Transcriptomics

description: Supplementary dataset 3. Trait data and alleles for SNP D_comp19374_c0_seq1:702 are provided for the Wagtail validation panel. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3599909_d7.v1
title: Additional file 2: of Elucidation of the genetic basis of variation for stem strength characteristics in bread wheat by Associative Transcriptomics

description: Supplementary dataset 2. Q matrix as used for input in association models is provided. STRUCTURE was used to calculate the Q matrix using an admixture model with independent allele frequency. After 100,000 burn-in and 100,000 iterations of K = 1 to 5 were completed three times, the best value of K was determined by using the method of Evanno et al. [16]. The combined Q matrix for the three replicates for K = 2 are provided. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3599945_d6.v1
title: Additional file 6: Table S3. of MM2S: personalized diagnosis of medulloblastoma patients and model systems

description: MB predictions for replicates of the GMTL mouse model from GSE36594. The final subgroup prediction of MM2S, per sample, is indicated as ‘MM2S_prediction’. Sample predictions are colored by their predicted MB subgroup as follows: Group3 (yellow), SHH (red), WNT (blue), Group4 (green), and normal (grey). For each sample, the closest 5 human neighbors used to make a prediction are also indicated, with percentages indicating the abundance of each particular MB subgroup within the neighbors. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3599993_d1.v1
title: Additional file 2: Table S1. of Genetic association of stomatal traits and yield in wheat grown in low rainfall environments

description: Mean square and probability of ANOVA to test significant differences among the lines for stomatal traits and yield under well-watered (WW) versus drought (D) in the glasshouse and Lameroo versus Roseworthy in field conditions. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3600002_d1.v1
title: Additional file 2: Table S2. of Protein expression changes induced in a malignant melanoma cell line by the curcumin analogue compound D6

description: D6 treated MM cells identified proteins. Complete list of proteins identified from the 10Â ÎźM D6 treated malignant melanoma cells (treated). Normalized spectral abundance factor (NSAF) values are reported for each protein. (XLS 142 kb)
DOI: 10.6084/m9.figshare.c.3600002_d2.v1
title: Additional file 1: Table S1. of Protein expression changes induced in a malignant melanoma cell line by the curcumin analogue compound D6

description: Control MM cells identified proteins. Complete list of proteins identified from the untreated malignant melanoma cells (control). Normalized spectral abundance factor (NSAF) values are reported for each protein. (XLS 160 kb)
DOI: 10.6084/m9.figshare.c.3600026_d1.v1
title: Additional file 1: of Vaccinate-assess-move method of mass canine rabies vaccination utilising mobile technology data collection in Ranchi, India

description: Complete dataset of dogs vaccinated during study. (XLSX 1444 kb)
DOI: 10.15468/dl.9au83x
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Korea (Democratic People’s Republic of), Japan, China, Russian Federation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC-BY-NC 4.0",
 "TaxonKey is Calidris tenuirostris (Horsfield, 1821)"
 ]
}

 The dataset includes 225 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037514-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3600140_d3.v1
title: MOESM3 of Dose-dependent alcohol-induced alterations in chromatin structure persist beyond the window of exposure and correlate with fetal alcohol syndrome birth defects

description: Additional file 3. The primer sequences utilized in the ChIP assay and quantitative PCR (qPCR) and expression analysis.