cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1191185.10fu
title: SH1191185.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.ggqaqm
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001579-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wcufsr
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009255-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3w25od
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003964-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cl8fb
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026329-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hehdid
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009310-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yaaplh
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003965-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1iph46
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026335-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fi88eq
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009328-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j1vuun
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003984-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v2sxnr
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026344-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pts2yb
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.2_1",
 "TaxonKey is Gratiola neglecta Torr."
 ]
}

 The dataset includes 31 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071424-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2y8s6p
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026382-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xun8kv
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003966-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vweuyu
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004030-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wanhiw
title: Occurrence Download

description: A dataset containing 397354131 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EOD – eBird Observation Dataset"
 ]
}

 The dataset includes 397354131 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009279-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqgmek
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026371-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpqwfh
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004018-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcz7di
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009286-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vaal2x
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026354-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lkvjvz
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004032-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zqjly
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009365-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kv4dym
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026390-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyscqw
title: Occurrence Download

description: A dataset containing 3079208 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "GadmGid is one of (COL.20_2, COL.29_2, COL.6_2, COL.12_2, COL.4_2, COL.14_2, COL.19_2)",
 "TaxonKey is one of (Chordata)"
 ]
 }
 ]
}

 The dataset includes 3079208 records from 327 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071389-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5255/ukda-sn-857253
title: Lived Experience at the Core: A Classification System for Risk-Taking Behaviours in Bipolar, 2022

description: Clinical observations suggest that individuals with a diagnosis of bipolar face difficulties regulating emotions and impairments to their cognitive processing, which can contribute to high-risk behaviours. However, there are few studies which explore the types of risk-taking behaviour that manifest in reality and evidence suggests that there is currently not enough support for the management of these behaviours. This study examined the types of risk-taking behaviours described by people who live with bipolar and their access to support for these behaviours. 

Semi-structured interviews were conducted with n=18 participants with a lived experience of bipolar and n=5 healthcare professionals. The interviews comprised open ended questions and a Likert-item questionnaire. The responses to the interview questions were analysed using content analysis and corpus linguistic methods to develop a classification system of risk-taking behaviours. The Likert-item questionnaire was analysed statistically and insights from the questionnaire were incorporated into the classification system. 

Our classification system includes 39 reported risk-taking behaviours which we manually inferred into six domains of risk-taking. Corpus linguistic and qualitative analysis of the interview data demonstrate that people need more support for risk-taking behaviours and that aside from suicide, self-harm, and excessive spending, many behaviours are not routinely monitored. 

This study shows that that people living with bipolar report the need for improved access to psychologically informed care, and that a standardised classification system or risk-taking questionnaire could act as a useful elicitation tool for guiding conversations around risk-taking to ensure that opportunities for intervention are not missed. We have also presented a novel methodological framework which demonstrates the utility of computational linguistic methods for the analysis of health research data.
DOI: 10.15468/dl.ezuy4r
title: Occurrence Download

description: A dataset containing 2206336170 species occurrences available in GBIF matching the query:
{
 "OccurrenceStatus" : [
 "is Present"
 ]
}

 The dataset includes 2206336170 records from 50046 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0412359-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28635317
title: Natural language processing of gene descriptions for overrepresentation analysis with GeneTEA

description: Data and models supporting "<b>Natural language processing of gene descriptions for overrepresentation analysis with GeneTEA</b>" (Boyle et al. 2025)File descriptions:<b>GeneTEA.pkl, GeneTEA-yeast.pkl, PharmaTEA.pkl</b> - pickled GeneTEA models<b>Fig2b/d.csv:</b> Top terms in Figure 2 b/d.<b>gProfiler_hsapiens_7-16-2025_4-35-07 PM__intersections.csv</b><b>:</b> g:GOSt results for Fig2b, downloaded from the g:Profiler site.<b>gProfiler_hsapiens_7-16-2025_4-41-03 PM__intersections.csv: </b>g:GOSt results for Fig2d, downloaded from the g:Profiler site.<b>enrichr_sets_03_01_2025.csv: </b>Enrichr<b> </b>database downloaded 3/1/2025, used for Figure 3 and S1.<b>gene sets for connexin</b><b>.gmt</b>: Enrichr gene sets containing the term "connexin", downloaded from the Enrichr site.<b>false_discoveries</b><b>.csv</b>: Benchmarking results for false discovery control in Figures 4 and S1.<b>EF_hand_example.csv</b>: Top terms and MedCPT scores for EF-hand example in Figure 4.<b>[Hallmark or Experimentally Derived Queries]_</b><b>score</b><b>s.csv</b>: Benchmarking results for [Hallmark or Experimentally Derived Queries] across joined top terms in Figures 4 and S2. The<i> "</i>joined_ranking" column corresponds to the MedCPT Relevance score across the top terms and "num_high_redundancy" contains the number of redundant term pairs.<b>[</b><b>Hallmark or Experimentally Derived Queries</b><b>]_</b><b>indiv.csv</b>: Benchmarking results for [Hallmark or Experimentally Derived Queries] for each top term in Figures 4 and S2. The<i> "</i>indiv<i>_</i>ranking" column corresponds to the MedCPT Relevance score for a single term.<b>Fig4_left/right</b>: Examples of top terms shown in what is now Figure 5.<b>gProfiler_hsapiens_3-13-2025_9-14-59 AM__intersections.csv: </b>g:GOSt results for Fig4_left, downloaded from the g:Profiler site.<b>gProfiler_hsapiens_2-11-2025_10-18-19 AM__intersections.csv</b>: g:GOSt results for Fig4_right, downloaded from the g:Profiler site.<br>
DOI: 10.6084/m9.figshare.28635317.v2
title: Natural language processing of gene descriptions for overrepresentation analysis with GeneTEA

description: Data and models supporting "<b>Natural language processing of gene descriptions for overrepresentation analysis with GeneTEA</b>" (Boyle et al. 2025)File descriptions:<b>GeneTEA.pkl, GeneTEA-yeast.pkl, PharmaTEA.pkl</b> - pickled GeneTEA models<b>Fig2b/d.csv:</b> Top terms in Figure 2 b/d.<b>gProfiler_hsapiens_7-16-2025_4-35-07 PM__intersections.csv</b><b>:</b> g:GOSt results for Fig2b, downloaded from the g:Profiler site.<b>gProfiler_hsapiens_7-16-2025_4-41-03 PM__intersections.csv: </b>g:GOSt results for Fig2d, downloaded from the g:Profiler site.<b>enrichr_sets_03_01_2025.csv: </b>Enrichr<b> </b>database downloaded 3/1/2025, used for Figure 3 and S1.<b>gene sets for connexin</b><b>.gmt</b>: Enrichr gene sets containing the term "connexin", downloaded from the Enrichr site.<b>false_discoveries</b><b>.csv</b>: Benchmarking results for false discovery control in Figures 4 and S1.<b>EF_hand_example.csv</b>: Top terms and MedCPT scores for EF-hand example in Figure 4.<b>[Hallmark or Experimentally Derived Queries]_</b><b>score</b><b>s.csv</b>: Benchmarking results for [Hallmark or Experimentally Derived Queries] across joined top terms in Figures 4 and S2. The<i> "</i>joined_ranking" column corresponds to the MedCPT Relevance score across the top terms and "num_high_redundancy" contains the number of redundant term pairs.<b>[</b><b>Hallmark or Experimentally Derived Queries</b><b>]_</b><b>indiv.csv</b>: Benchmarking results for [Hallmark or Experimentally Derived Queries] for each top term in Figures 4 and S2. The<i> "</i>indiv<i>_</i>ranking" column corresponds to the MedCPT Relevance score for a single term.<b>Fig4_left/right</b>: Examples of top terms shown in what is now Figure 5.<b>gProfiler_hsapiens_3-13-2025_9-14-59 AM__intersections.csv: </b>g:GOSt results for Fig4_left, downloaded from the g:Profiler site.<b>gProfiler_hsapiens_2-11-2025_10-18-19 AM__intersections.csv</b>: g:GOSt results for Fig4_right, downloaded from the g:Profiler site.<br>
DOI: 10.15468/dl.skqgxy
title: Occurrence Download

description: A dataset containing 981337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anguilla anguilla (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 981337 records from 573 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052638-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.be69y8
title: Occurrence Download

description: A dataset containing 1240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anisarchus medius (Reinhardt, 1837)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1240 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052640-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kru6px
title: Occurrence Download

description: A dataset containing 27190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anisotremus virginicus (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 27190 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052641-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxtd69
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anoplagonus inermis (Günther, 1860)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 154 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052642-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ewskt
title: Occurrence Download

description: A dataset containing 1405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anoplogaster cornuta (Valenciennes, 1833)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1405 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052643-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.