cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1141727.09fu
title: SH1141727.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1141728.09fu
title: SH1141728.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.22613719.v1
title: Additional file 3 of Scoping literature review and focus groups with healthcare professionals on psychosocial and lifestyle assessments for childhood obesity care

description: Additional file 3. Extensive table containing the original descriptions of factors that may contribute to the development and maintenance of childhood obesity and that should therefore be identified.
DOI: 10.34808/x3mx-q794
title: Classical Hodgkin lymphoma, nodular sclerosis, NOS - Female, 25 - Tissue image [5300730025876721]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 25Clinical description: Enlarged cervical and supraclavicular lymph nodes on the left side. Suspicion of lymphoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: CHOROBA HODGKINADiagnosis: Classical Hodgkin lymphoma, nodular sclerosis, NOSResult of the histopathological examination: Hodgkin lymphoma, nodular sclerosis: lymph node with nodules separated by collagen bands. Numerous Hodgkin Reed-Sternberg (HRS). HRS cells: CD30+, CD15+, MUM1+, Pax5 (weak)+, CD3-, CD20-, Ki-67+, EBVLMP1-, ALK1-.Sample:Material: FFPECollecting method: Excision of lesionsTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Supraclavicular lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: PAX5Technology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/hhz0-ye04
title: Gastrointestinal stromal tumor - Female, 71 - Tissue image [5300730025882271]

description: This is the histopathological image of ESOPHAGUS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 71Clinical description: CT: 44 x 38 x 100 mm tumor of wall of oesophagus.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: COMPLEX MIXED AND STROMAL NEOPLASMSDiagnosis: Gastrointestinal stromal tumorResult of the histopathological examination: GIST: CKAE1/AE3-, CD117+, DOG1+, CD34+, CK5/6-, SOX10-, p63-, LCA-, SMA-, Ki-67 20%.Sample:Material: FFPECollecting method: Surgical biopsyTopography: DIGESTIVE ORGANSOrgan: ESOPHAGUSTissue: Esophagus NOSType of staining: positive/IHCStaining: Not applicableAntibody: SMATechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.8259263
title: Performance and selection of tomato cultivars for organic cultivation in greenhouse

description: ABSTRACT Production of tomato fruits in organic systems has difficulties such as the use of adequate cultivars. The hypothesis is that organic cultivation has strength dependency of the selection of appropriate genotypes to increase the economic viability of fruit production. The present work aimed to test and obtain, under organic greenhouse system, cultivars of tomato with good fruit productivity. Tomato cultivars, hybrids and non-hybrids, were evaluated with indetermined (tutoring and stripping) and determined growth habit (free growth). In the first cultivation, we observed symptoms of nutritional deficiency in fruiting stage of tomato plants, resulting in very low productivity of fruits, with maximum of 1.8 kg/plant for the Serato hybrid. In the second year of cultivation, the additions and increases in fertilizing management increased the fruit productivity in all cultivars - in Serato, to 3.1 kg/plant, and in Predador, to 2.8 kg/plant. The hybrid Candieiro, with determined habit growth, resulted in 2.0 kg/plant of fruits. The use of hybrids with genetic resistance to some important pests and diseases, associated with increases and adequate fertilizing management, were primordial factors to increase fruit productivity in tomato under organic systems in greenhouse.
DOI: 10.34808/ym3n-1f29
title: Clear cell renal cell carcinoma, NOS - Male, 57 - Tissue image [530073002587901]

description: This is the histopathological image of KIDNEY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 57Clinical description: 9 x 7 x 7 cm tumor of right kidney.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Clear cell renal cell carcinoma, NOSResult of the histopathological examination: Clear cell renal cell carcinoma of kidney (G2 WHO/ISUP Nuclear Grading System).Sample:Material: FFPECollecting method: Surgical specimenTopography: URINARY TRACTOrgan: KIDNEYTissue: Kidney, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/kt5z-z164
title: Oncocytoma - Female, 65 - Tissue image [5300730025861331]

description: This is the histopathological image of KIDNEY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 65Clinical description: 32 x 20 mm tumor of left kidney on ultrasound. CT: 30 mm tumor of left kidney, suspicion of clear cell renal cell carcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: OncocytomaResult of the histopathological examination: Oncocytoma of kidney.Sample:Material: FFPECollecting method: Excision of lesionsTopography: URINARY TRACTOrgan: KIDNEYTissue: Kidney, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/yy75-zq44
title: Seminoma, NOS - Male, 33 - Tissue image [530073002586261]

description: This is the histopathological image of TESTIS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 33Clinical description: Tumor of right testis.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: GERM CELL NEOPLASMSDiagnosis: Seminoma, NOSResult of the histopathological examination: Seminoma of testis: CD117+, Oct4+, D2-40+, Glypican 3-, CD30-, hCG-, AFP-.Sample:Material: FFPECollecting method: Surgical specimenTopography: MALE GENITAL ORGANSOrgan: TESTISTissue: Testis, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/av1d-1j89
title: Dedifferentiated liposarcoma - Male, 71 - Tissue image [5300730025882731]

description: This is the histopathological image of RETROPERITONEUM AND PERITONEUM tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 71Clinical description: 31 x 20 x 10 cm tumor of retroperitoneal space.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: LIPOMATOUS NEOPLASMSDiagnosis: Dedifferentiated liposarcomaResult of the histopathological examination: Dedifferentiated liposarcoma: MDM2+, S100-, CKAE1/AE3-, LCA-, Ki-67 5%.Sample:Material: FFPECollecting method: Surgical specimenTopography: RETROPERITONEUM AND PERITONEUMOrgan: RETROPERITONEUM AND PERITONEUMTissue: RetroperitoneumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/cb0r-qv03
title: Solitary fibrous tumor, NOS - Female, 61 - Tissue image [5300730025867661]

description: This is the histopathological image of OTHER AND ILL-DEFINED SITES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 61Clinical description: 4 x 3,5 x 3 cm tumor of neck on the left side. Suspicion of metastases.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: FIBROMATOUS NEOPLASMSDiagnosis: Solitary fibrous tumor, NOSResult of the histopathological examination: Solitary fibrous tumor: CD34+, STAT6+, SMA-, S100-, SYN-, CKAE1/AE3-, Ki-67 10%-.Sample:Material: FFPECollecting method: Excision of lesionsTopography: OTHER AND ILL-DEFINED SITESOrgan: OTHER AND ILL-DEFINED SITESTissue: Head, face or neck, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/6t4v-3s92
title: Seminoma, NOS - Male, 33 - Tissue image [5300730025863061]

description: This is the histopathological image of TESTIS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 33Clinical description: Tumor of right testis.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: GERM CELL NEOPLASMSDiagnosis: Seminoma, NOSResult of the histopathological examination: Seminoma of testis: CD117+, Oct4+, D2-40+, Glypican 3-, CD30-, hCG-, AFP-.Sample:Material: FFPECollecting method: Surgical specimenTopography: MALE GENITAL ORGANSOrgan: TESTISTissue: Testis, NOSType of staining: positive/IHCStaining: Not applicableAntibody: OCT 4Technology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.8259308
title: Selection and recommend of quinoa (Chenopodium quinoa) genotypes based on the yield genotypic adaptability and stability

description: ABSTRACT The present study aimed to select and recommend quinoa genotypes based on the yield genotypic adaptability and stability, by the method of the Harmonic mean of relative performance of genotypic values. Five experiments were conducted during the crop seasons of 2014 and 2015 in two locations in the Western region of Paraná State, Brazil. This study involved the evaluation of the yield of thirteen quinoa genotypes. Initially, the genotypic values (GV) were obtained by employing BLUP/REML methodology for mixed models. After, the values of the harmonic mean for genotypic value (HMGV*MG), the relative performance for genotypic values (RPGV*MG) and the harmonic mean of the relative performance for genotypic values (HMRPGV*MG) were obtained. The genotypes Q1317 and Q2014 were the best indicated for cultivation in the summer crop, with medium yield genotypic stability and adaptability. The genotype Q1318 is recommended for winter crop, presenting high yield genotypic stability and adaptability.
DOI: 10.6084/m9.figshare.8259308.v1
title: Selection and recommend of quinoa (Chenopodium quinoa) genotypes based on the yield genotypic adaptability and stability

description: ABSTRACT The present study aimed to select and recommend quinoa genotypes based on the yield genotypic adaptability and stability, by the method of the Harmonic mean of relative performance of genotypic values. Five experiments were conducted during the crop seasons of 2014 and 2015 in two locations in the Western region of Paraná State, Brazil. This study involved the evaluation of the yield of thirteen quinoa genotypes. Initially, the genotypic values (GV) were obtained by employing BLUP/REML methodology for mixed models. After, the values of the harmonic mean for genotypic value (HMGV*MG), the relative performance for genotypic values (RPGV*MG) and the harmonic mean of the relative performance for genotypic values (HMRPGV*MG) were obtained. The genotypes Q1317 and Q2014 were the best indicated for cultivation in the summer crop, with medium yield genotypic stability and adaptability. The genotype Q1318 is recommended for winter crop, presenting high yield genotypic stability and adaptability.
DOI: 10.5281/zenodo.6592319
title: Data in support of "An exploration of linkage fine-mapping on sequences from case-control studies"

description: These data were simulated for an exploration of linkage fine-mapping on sequences from case-control studies. The code to generate and analyze the data is available on GitHub in the scripts at https://github.com/SFUStatgen/PBJ0. Queries may be directed to Payman Nickchi at pnickchi@sfu.ca or Charith (Bhagya) Karunarathna at ch757276@dal.ca.
description: This research was supported in part by the Natural Sciences and Engineering Research Council of Canada, grant number RGPIN/04296-2018
description: {"references": ["An exploration of linkage fine-mapping on sequences from case-control studies. Payman Nickchi, Charith Karunarathna, Jinko Graham, bioRxiv preprint at doi: https://doi.org/10.1101/2021.12.18.473306"]}
DOI: 10.6084/m9.figshare.8259530.v1
title: Phytotoxicity of imazapyr+imazapic on tolerant rice varieties Guri INTA CL and IRGA 424 RI

description: ABSTRACT Rice varieties from the Clearfield® system may present different tolerance levels to imidazolinone herbicides in function of application rate. The objective of this research was to evaluate the phytotoxicity of different rates of the formulated mixture of the herbicides imazapyr+imazapic applied on two tolerant irrigated rice varieties. The experiment was carried out in 2015/16 and 2016/17 growing seasons. A randomized complete block design was used in a factorial 2x6 with five replications. The factor A was composed by the tolerant rice varieties Guri INTA CL and IRGA 424 RI, and the factor B by rates of the formulated mixture of the herbicides imazapyr+imazapic (525+175 g a.i. kg-1) of 0, 140, 210, 280, 350, and 420 g c.p. ha-1. In the first growing season, it was observed maximum phytotoxicity of 8.5% while in the second the highest percentage was 13%. The number of stems m-2, plant height, shoot dry matter, SPAD index, and grain yield were not influenced (p≥0.05) by herbicide rates. The application of the formulated mixture of the herbicides imazapyr+imazapic causes low initial phytotoxicity to the tolerant rice varieties Guri INTA CL and IRGA 424 RI up to three times the recommended rate, not influencing their grain yield.
DOI: 10.34808/pdz5-r108
title: Phyllodes tumor, benign - Female, 31 - Tissue image [5300730025889761]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 31Clinical description: 54 x 32 x 36 mm tumor of right breast on ultrasound. Suspicion of phyllodes tumor.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: FIBROEPITHELIAL NEOPLASMSDiagnosis: Phyllodes tumor, benignResult of the histopathological examination: Benign phyllodes tumor of breast.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Breast, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.8259530
title: Phytotoxicity of imazapyr+imazapic on tolerant rice varieties Guri INTA CL and IRGA 424 RI

description: ABSTRACT Rice varieties from the Clearfield® system may present different tolerance levels to imidazolinone herbicides in function of application rate. The objective of this research was to evaluate the phytotoxicity of different rates of the formulated mixture of the herbicides imazapyr+imazapic applied on two tolerant irrigated rice varieties. The experiment was carried out in 2015/16 and 2016/17 growing seasons. A randomized complete block design was used in a factorial 2x6 with five replications. The factor A was composed by the tolerant rice varieties Guri INTA CL and IRGA 424 RI, and the factor B by rates of the formulated mixture of the herbicides imazapyr+imazapic (525+175 g a.i. kg-1) of 0, 140, 210, 280, 350, and 420 g c.p. ha-1. In the first growing season, it was observed maximum phytotoxicity of 8.5% while in the second the highest percentage was 13%. The number of stems m-2, plant height, shoot dry matter, SPAD index, and grain yield were not influenced (p≥0.05) by herbicide rates. The application of the formulated mixture of the herbicides imazapyr+imazapic causes low initial phytotoxicity to the tolerant rice varieties Guri INTA CL and IRGA 424 RI up to three times the recommended rate, not influencing their grain yield.
DOI: 10.5281/zenodo.6592318
title: Data in support of "An exploration of linkage fine-mapping on sequences from case-control studies"

description: These data were simulated for an exploration of linkage fine-mapping on sequences from case-control studies. The code to generate and analyze the data is available on GitHub in the scripts at https://github.com/SFUStatgen/PBJ0. Queries may be directed to Payman Nickchi at pnickchi@sfu.ca or Charith (Bhagya) Karunarathna at ch757276@dal.ca.
description: This research was supported in part by the Natural Sciences and Engineering Research Council of Canada, grant number RGPIN/04296-2018
description: {"references": ["An exploration of linkage fine-mapping on sequences from case-control studies. Payman Nickchi, Charith Karunarathna, Jinko Graham, bioRxiv preprint at doi: https://doi.org/10.1101/2021.12.18.473306"]}
DOI: 10.34808/z259-bm78
title: Clear cell renal cell carcinoma, NOS - Male, 57 - Tissue image [5300730025879381]

description: This is the histopathological image of KIDNEY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 57Clinical description: 9 x 7 x 7 cm tumor of right kidney.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Clear cell renal cell carcinoma, NOSResult of the histopathological examination: Clear cell renal cell carcinoma of kidney (G2 WHO/ISUP Nuclear Grading System).Sample:Material: FFPECollecting method: Surgical specimenTopography: URINARY TRACTOrgan: KIDNEYTissue: Kidney, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/5rsc-vp33
title: Nodular melanoma - Male, 74 - Tissue image [5300730025861991]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 74Clinical description: 1,1 x 1,1 x 0,3 cm brown ulcerated lesion of skin of face.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: NEVI AND MELANOMASDiagnosis: Nodular melanomaResult of the histopathological examination: Melanoma of skin (nodular type): SOX-10+, S100+, Melan A-, CKAE1/AE3-, EMA-, Ki-67 80%. Epithelioid cells, ulceration is present, mitotic index: 19 mitoses/1mm2, TILs-NON-BRISK, Clark-IV, Breslow- 2,5 mm, pT3b. Regression is present. Complete excision.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of faceType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk