cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/bmxw1-xm220
title: Bacillus subtilis

description: Session notes: Bacillus subtilis peptidoglycan sacculi, digested 10 mins with achromopeptidase Tilt series notes: Digested sacculus. Interesting looking meshwork. Horrible ice causing nasty interference. Tomogram notes: Interesting network visible but very poor reconstruction due to crystaline ice and no fiducials.
description: <strong>Tilt Series Date:</strong> 2010-09-16</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> subsp. subtilis str. 168</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-59.0°, 64.0°), step: 0.8°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-09-16-2/rawdata/</p>10sep16a_PGdigest_10min_005.st,  Tilt Series (Pixel Size 0.774 nm), 2.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-09-16-2/rawdata/10sep16a_PGdigest_10min_005.st"
        > <i class="download icon"></i> Download </a></p>

        10sep16a_PGdigest_10min_005.rec,  Reconstruction (Pixel Size 1.548 nm), 786.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-09-16-2/3dimage_21155/10sep16a_PGdigest_10min_005.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/g4pg3-xab74
title: Mycobacterium marinum

description: sporulating
description: <strong>Tilt Series Date:</strong> 2015-05-19</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Mycobacterium marinum</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-19-4/rawdata/</p>Mmarinum0004.mrc,  Tilt Series (Pixel Size 0.63 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-19-4/rawdata/Mmarinum0004.mrc"
        > <i class="download icon"></i> Download </a></p>

        Mmarinum0004_full.rec,  Reconstruction (Pixel Size 2.52 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-19-4/3dimage_57259/Mmarinum0004_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.34740/kaggle/dsv/12900505
title: Market Prices of Commodities in South Tangerang
DOI: 10.22002/kqdzx-wdm92
title: PW1307

description: PW 1307 Pseudomonas aeruginosa PAO1 delta CheA (F7)transposon mutant collection
description: <strong>Tilt Series Date:</strong> 2015-05-28</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: 8.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-05-28-4/rawdata/</p>PW1307deltaCheA0007.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-05-28-4/rawdata/PW1307deltaCheA0007.mrc"
        > <i class="download icon"></i> Download </a></p>

        PW1307deltaCheA0007_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-05-28-4/3dimage_57502/PW1307deltaCheA0007_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/d823a-7xc62
title: S. aureus

description: Raw data files of S. aureus
description: <strong>Tilt Series Date:</strong> 2017-11-06</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Staphylococcus aureus</p>
<strong>Strain:</strong> subsp. aureus str. Newman</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 50.0°), step: 1.5°, constant angular increment, dosage: 280.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2017-11-06-12/rawdata/</p>Sa_rpsF0012.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2017-11-06-12/rawdata/Sa_rpsF0012.mrc"
        > <i class="download icon"></i> Download </a></p>

        Sa_rpsF0012_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2017-11-06-12/3dimage_90110/Sa_rpsF0012_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/wpnqd-c6a06
title: COS7 cells

description: These datasets have both INS1-E and COS7 cells (mostly COS7). NOTE: the ambiguity is due to one of the grids getting swapped while working with Stephen Carter. These datasets contain some of my first tomograms to help me learn tomography.
description: <strong>Tilt Series Date:</strong> 2015-09-30</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> Cos7</p>
<strong>Strain:</strong> Cos7 cells</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 240.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-09-30-30/3dimage_70028/</p>Features0006_part121_15.rec,  Reconstruction (Pixel Size 1.92 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-09-30-30/3dimage_70028/Features0006_part121_15.rec"
        > <i class="download icon"></i> Download </a></p>

        Features0006.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-09-30-30/rawdata/Features0006.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ap20a-6yt13
title: E. coli pED208_log

description: cells expressing T4SS in log phase
description: <strong>Tilt Series Date:</strong> 2015-04-13</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-04-13-35/rawdata/</p>pED_log20007.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-04-13-35/rawdata/pED_log20007.mrc"
        > <i class="download icon"></i> Download </a></p>

        pED_log20007.rec,  Reconstruction (Pixel Size 2.0 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-04-13-35/3dimage_54060/pED_log20007.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2d460-52x32
title: P41+P41

description: Raw data files of P41+P41
description: <strong>Tilt Series Date:</strong> 2015-04-18</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 90.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-18-20/rawdata/</p>atlas20007.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-18-20/rawdata/atlas20007.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas20007_part131_2.rec,  Reconstruction (Pixel Size 1.56 nm), 222.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-18-20/3dimage_54515/atlas20007_part131_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/yyk5q-vcx76
title: S. aureus

description: Raw data files of S. aureus
description: <strong>Tilt Series Date:</strong> 2017-12-04</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Staphylococcus aureus</p>
<strong>Strain:</strong> subsp. aureus str. Newman</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 2°, constant angular increment, dosage: 260.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2017-12-04-3/rawdata/</p>Sa_rpsF0003.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2017-12-04-3/rawdata/Sa_rpsF0003.mrc"
        > <i class="download icon"></i> Download </a></p>

        Sa_rpsF0003_part51_7.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2017-12-04-3/3dimage_90967/Sa_rpsF0003_part51_7.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2fgce-fmd67
title: S. aureus

description: Raw data files of S. aureus
description: <strong>Tilt Series Date:</strong> 2017-11-07</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Staphylococcus aureus</p>
<strong>Strain:</strong> subsp. aureus str. Newman</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 50.0°), step: 1.5°, constant angular increment, dosage: 230.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2017-11-07-18/rawdata/</p>Sa_rpsF_0018.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2017-11-07-18/rawdata/Sa_rpsF_0018.mrc"
        > <i class="download icon"></i> Download </a></p>

        Sa_rpsF_0018.rec,  Reconstruction (Pixel Size 1.56 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2017-11-07-18/3dimage_90214/Sa_rpsF_0018.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9b8ne-0mb10
title: E. coli pED208_log

description: cells expressing T4SS in log phase
description: <strong>Tilt Series Date:</strong> 2015-04-13</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-04-13-3/rawdata/</p>pED_log20003.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-04-13-3/rawdata/pED_log20003.mrc"
        > <i class="download icon"></i> Download </a></p>

        pED_log20003.rec,  Reconstruction (Pixel Size 2.0 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-04-13-3/3dimage_54005/pED_log20003.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.dqsqzv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Styela clava",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005693-250827131500795/datasets/export for details.
DOI: 10.15468/dl.he94da
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Styela clava",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 105 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005692-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2h9v6
title: Occurrence Download

description: A dataset containing 927 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Styela clava",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 927 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005694-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/0p6pk-ffe09
title: E. coli EEEE

description: Penicillin lysed E. coli (grown in TB)
description: <strong>Tilt Series Date:</strong> 2015-03-06</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: 6.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-06-20/rawdata/</p>EEEENEW0016.mrc,  Tilt Series (Pixel Size 0.27 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-06-20/rawdata/EEEENEW0016.mrc"
        > <i class="download icon"></i> Download </a></p>

        EEEENEW0016_full.rec,  Reconstruction (Pixel Size 1.08 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-06-20/3dimage_52684/EEEENEW0016_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/nv1yz-40647
title: E. coli EEEE

description: E. coli EEEE, penicillin lysedmotion corrected
description: <strong>Tilt Series Date:</strong> 2015-03-13</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: 7.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-13-12/rawdata/</p>EEEEmot0006_mcorr.mrc,  Tilt Series (Pixel Size 0.32 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-13-12/rawdata/EEEEmot0006_mcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        EEEEmot0006_mcorr_full.rec,  Reconstruction (Pixel Size 1.28 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-13-12/3dimage_53241/EEEEmot0006_mcorr_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/c0ja8-kbk58
title: Pombe Cryosections

description: Raw data files of Pombe Cryosections
description: <strong>Tilt Series Date:</strong> 2015-07-31</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Schizosaccharomyces pombe</p>
<strong>Strain:</strong> cdc25-22 rlc1-3GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 145.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> autoPatch</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2015-07-31-11/rawdata/</p>073105_pombe_cryosection_grid3_hole2_tomo0001.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2015-07-31-11/rawdata/073105_pombe_cryosection_grid3_hole2_tomo0001.mrc"
        > <i class="download icon"></i> Download </a></p>

        073105_pombe_cryosection_grid3_hole2_tomo0001.rec,  Reconstruction (Pixel Size 2.0 nm), 890.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2015-07-31-11/3dimage_59938/073105_pombe_cryosection_grid3_hole2_tomo0001.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dd57m-t4575
title: V. cholerae

description: for MSHA pili
description: <strong>Tilt Series Date:</strong> 2016-01-04</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-36/3dimage_72057/</p>20160104_Vcholerae_MSHA_10036.rec,  Reconstruction (Pixel Size 1.56 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-36/3dimage_72057/20160104_Vcholerae_MSHA_10036.rec"
        > <i class="download icon"></i> Download </a></p>

        20160104_Vcholerae_MSHA_10036.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-36/rawdata/20160104_Vcholerae_MSHA_10036.mrc"
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DOI: 10.22002/h4hvf-fyb02
title: E. coli Sacculi (MG1655)

description: Raw data files of E. coli Sacculi (MG1655)
description: <strong>Tilt Series Date:</strong> 2015-04-10</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> MG1655 sacculi</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2015-04-10-16/rawdata/</p>041015_mg1655_atlas1_tomo0012.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        041015_mg1655_atlas1_tomo0012_full.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
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