cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.qg004
title: Data from: Morphometrics and paleoecology of Catenipora (Tabulata) from the Xiazhen Formation (Upper Ordovician), Zhuzhai, South China

description: Catenipora is one of the most common tabulate coral genera occurring in
 various lithofacies in the Upper Ordovician Xiazhen Formation at Zhuzhai
 in South China. A combination of traditional multivariate analysis and
 geometric morphometrics is applied to a large number of specimens to
 distinguish and identify species. Based on three major principal
 components extracted from 11 morphological characters, three major groups
 as determined by the cluster-analysis dendrogram are considered to be
 morphospecies. Their validity and distinctiveness are confirmed by
 discriminant analysis, descriptive statistics, and bivariate plots.
 Tabularium area and common wall thickness are the most meaningful
 characters to distinguish the three morphospecies. Geometric morphometrics
 is adopted to compare the morphospecies with types and/or figured
 specimens of species previously reported from the vicinity of Zhuzhai.
 Despite discrepancies in corallite size, principal component analysis and
 discriminant analysis, as well as consideration of overall morphological
 characteristics, indicate that the morphospecies represent C.
 zhejiangensis Yu in Yu et al., 1963, C. shiyangensis Lin and Chow, 1977,
 and C. dianbiancunensis Lin and Chow, 1977. Catenipora occurs in seven
 stratigraphic intervals in the Xiazhen Formation at Zhuzhai, representing
 a variety of heterogeneous environments. The coralla preservation is
 variable due to differential compaction; coralla preserved in limestones
 are commonly intact and in growth position, whereas those in shales are
 mostly crushed or fragmentary. The size and shape of corallites are
 considered primarily to be species-specific characters, but are also
 related to the depositional environments. In all species, morphological
 characters, including corallite size, septal development, and shape and
 size of lacunae, show high variability in accordance with lithofacies and
 stratigraphic position. The intraspecific differences in corallite size at
 various localities in the Zhuzhai area may indicate responses to local
 environmental factors, but may also reflect genetic differences if there
 was limited connection among populations.
description: Supplemental Data
 1Stratigraphic
 information and locality of Catenipora specimens for morphometric
 analysis.
DOI: 10.15468/jzzneg
title: A redefinition of Gauromaia Pascoe, 1866 (Coleoptera: Tenebrionidae: Stenochiinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Telnov, Dmitry, Ruzzier, Enrico (2024): A redefinition of Gauromaia Pascoe, 1866 (Coleoptera: Tenebrionidae: Stenochiinae). Zootaxa 5551 (3): 531-555, DOI: 10.11646/zootaxa.5551.3.5, URL: https://doi.org/10.11646/zootaxa.5551.3.5AbstractGauromaia dives Pascoe, 1866, type species of the genus, is redescribed; Celebesa Pic, 1921, hitherto a genus in Cnodalonini Oken, 1843, is downgraded in rank to a subgenus of Gauromaia Pascoe, 1866. The subgeneric rank is confirmed for Gauromaia (Falsogauromaia Pic, 1921). The following new combinations are proposed: G. (Celebesa) elongata (Pic, 1921) comb. nov., G. (C.) impressa (Pic, 1923) comb. nov., G. (C.) latipennis (Pic, 1921) comb. nov., G. (C.) striata (Pic, 1923) comb. nov., and the synonym Celebesa purpurea (Pic, 1921) syn. nov. is introduced for Gauromaia (Celebesa) angustior (Pic, 1921) comb. nov. Lectotype designations are made for five species: Gauromaia dives, Gauromaia (Celebesa) angustior, Gauromaia (Celebesa) purpurea, Gauromaia (Celebesa) elongata, and Gauromaia (Falsogauromaia) annulipes Pic, 1921. An annotated checklist of Gauromaia species, a key to its subgenera, and a key to the species of the subgenus Celebesa are presented for the first time. New faunistic records of Gauromaia (Celebesa) and G. (Falsogauromaia) are provided.
DOI: 10.5061/dryad.230v7
title: Data from: Ambient temperature-mediated changes in hepatic gene expression of a mammalian herbivore (Neotoma lepida)

description: Herbivores regularly ingest natural toxins produced by plants as a defence
 against herbivory. Recent work suggests that compound toxicity is
 exacerbated at higher ambient temperatures. This phenomenon, known as
 temperature-dependent toxicity (TDT), is the likely result of decreased
 liver function at warmer temperatures; however, the underlying cause of
 TDT remains speculative. In the present study, we compared the effects of
 temperature and dietary plant toxins on differential gene expression in
 the liver of an herbivorous rodent (Neotoma lepida), using
 species-specific microarrays. Expression profiles revealed a greater
 number of differentially expressed genes at an ambient temperature below
 the thermal neutral zone for N. lepida (22°C) compared to one within
 (27°C). Genes and pathways upregulated at 22°C were related to growth and
 biosynthesis, whereas those upregulated at 27°C were associated with
 gluconeogenesis, apoptosis and protein misfolding, suggestive of a
 stressed state for the liver. Additionally, few genes associated with
 xenobiotic metabolism were induced when woodrats ingested plant toxins
 compared to nontoxic diets, regardless of temperature. Taken together, the
 results highlight the important role of ambient temperature on gene
 expression profiles in the desert woodrat. Temperatures just below the
 thermal neutral zone might be a favourable state for liver metabolism.
 Furthermore, the reduction in the number of genes expressed at a
 temperature within the thermal neutral zone indicates that liver function
 may be reduced at temperatures that are not typically considered as
 thermally stressful. Understanding how herbivorous mammals will respond to
 ambient temperature is imperative to accurately predict the impacts of
 climate change.
description: Feeding Trial
 DataData collected from
 woodrats (N=16) during 8-day feeding trial in laboratory setting. Data
 includes average daily food intake (g), average daily creosote resin
 intake (g), starting body mass (g), ending body mass (g), absolute liver
 size (g), and liver size as a percentage of ending body mass (%). Data
 also includes animal ID number and treatment group.data feeding
 trial.xlsxFeeding Trial Data
 Analysis NotesR script file including
 code used to analyze data from feeding trial.data feeding trial
 notes.R
DOI: 10.5061/dryad.7v11h
title: Data from: Patterns and correlates of claims for brown bear damage on a continental scale

description: Wildlife damage to human property threatens human–wildlife coexistence.
 Conflicts arising from wildlife damage in intensively managed landscapes
 often undermine conservation efforts, making damage mitigation and
 compensation of special concern for wildlife conservation. However, the
 mechanisms underlying the occurrence of damage and claims at large scales
 are still poorly understood. Here, we investigated the patterns of damage
 caused by brown bears Ursus arctos and its ecological and socio-economic
 correlates at a continental scale. We compiled information about
 compensation schemes across 26 countries in Europe in 2005–2012 and
 analysed the variation in the number of compensated claims in relation to
 (i) bear abundance, (ii) forest availability, (iii) human land use, (iv)
 management practices and (v) indicators of economic wealth. Most European
 countries have a posteriori compensation schemes based on damage
 verification, which, in many cases, have operated for more than 30 years.
 On average, over 3200 claims of bear damage were compensated annually in
 Europe. The majority of claims were for damage to livestock (59%),
 distributed throughout the bear range, followed by damage to apiaries
 (21%) and agriculture (17%), mainly in Mediterranean and eastern European
 countries. The mean number of compensated claims per bear and year ranged
 from 0·1 in Estonia to 8·5 in Norway. This variation was not only due to
 the differences in compensation schemes; damage claims were less numerous
 in areas with supplementary feeding and with a high proportion of
 agricultural land. However, observed variation in compensated damage was
 not related to bear abundance. Synthesis and applications. Compensation
 schemes, management practices and human land use influence the number of
 claims for brown bear damage, while bear abundance does not. Policies that
 ignore this complexity and focus on a single factor, such as bear
 population size, may not be effective in reducing claims. To be effective,
 policies should be based on integrative schemes that prioritize damage
 prevention and make it a condition of payment of compensation that
 preventive measures are applied. Such integrative schemes should focus
 mitigation efforts in areas or populations where damage claims are more
 likely to occur. Similar studies using different species and continents
 might further improve our understanding of conflicts arising from wildlife
 damage.
description: bear_damage_europe-DataNumber of compensated claims for brown bear damage in Europe obtained from national and regional wildlife agencies and published literature and reports, as well as from researchers and practitioners. The file also contains environmental and socioeconomic information of each of the study sites.
DOI: 10.5061/dryad.3h0q8
title: Data from: Experimental manipulation of population-level MHC diversity controls pathogen virulence evolution in Mus musculus

description: The virulence levels attained by serial passage of pathogens through
 similar host genotypes are much higher than observed in natural systems,
 however, it is unknown what keeps natural virulence levels below these
 empirically demonstrated maximum levels. One hypothesis suggests that host
 diversity impedes pathogen virulence, because adaptation to one host
 genotype carries tradeoffs in the ability to replicate and cause disease
 in other host genotypes. To test this hypothesis, with the simplest level
 of population diversity within the loci of the major histocompatibility
 complex (MHC), we serially passaged Friend Virus Complex (FVC) through two
 rounds, in hosts with either the same MHC genotypes (pure passage) or
 hosts with different MHC genotypes (alternated passage). Alternated
 passages showed a significant overall reduction of viral titer (31%) and
 virulence (54%) when compared to pure passages. Furthermore, a resistant
 host genotype initially dominated any effects due to MHC diversity,
 however, when FVC was allowed to adapt to the resistant host genotype,
 predicted MHC effects emerged, i.e. alternated lines show reduced
 virulence. These data indicate serial exposure to diverse MHC genotypes is
 an impediment to pathogen adaptation, suggesting genetic variation at MHC
 loci is important for limiting virulence in a rapidly evolving pathogen
 and supports negative frequency-dependent selection as a force maintaining
 MHC diversity in host populations.
description: Experimental
 Manipulation of Population-level MHC Diversity Controls Pathogen Virulence
 Evolution in Mus musculus Data FileThis file contains data
 from 5 different experiments that are combined to develop the conclusions
 in the manuscript "Experimental Manipulation of Population-level MHC
 Diversity Controls Pathogen Virulence Evolution in Mus musculus."
 Balb.B, Balb.K, Balb.D.1, and Balb.D.1.2 were all combined and analyzed
 together, whereas, BB Sup was analyzed separately. Pertinent data to the
 analysis are in the columns labelled: "spleen mass,"
 "proviral load," and "litter." There is also
 infectious virus from the genetic background of mouse used to infect the
 mouse in each row in column labelled "Virus" and the background
 of the mouse in the column labelled "Host." The
 "Treatment" column puts each mouse into one of Three treatments,
 Pure passages (Pure), alternating passage (ALT), or the initial infections
 to start the passages (Stock).MHC alt final
 data.csv
DOI: 10.5281/zenodo.17542778
title: Replication package for "Large Language Models: A Survey of Surveys"

description: This replication package accompanies the paper "Large Language Models: A Survey of Surveys" by Max Hort, Fernando Vallecillos-Ruiz, and Leon Moonen, currently under review. A PDF preprint is included in this record.

The field of Large Language Models (LLMs) is rapidly expanding, with new research published daily. As a result, research interest and progress in LLMs have exploded, making it challenging to keep up. To help navigate this vast landscape, this work compiles and categorizes existing survey papers on LLMs. Most of these surveys have been published or posted in the past few years, providing a comprehensive and up-to-date overview of the field. We hope that our compilation can be helpful for researchers and practitioners who want to get a quick understanding of the key topics, trends, and future directions in LLM research.

This record contains an overview of the data and taxonomy for our study, as well as a BiBTeX bibliography file. These sources include a total of 984 publications, collected up to August 2025, extending beyond the 424 surveys analyzed in the initial paper (PDF preprint).

The data and preprint are distributed under the CC BY 4.0 license.

How to Cite

If you use this work or the accompanying dataset, please cite our paper. You can find the full paper and BibTeX file on Zenodo.

BibTeX Entry:



@misc{hort2025llmsurvey,
  author       = {Hort, Max and Vallecillos-Ruiz, Fernando and Moonen, Leon},
  title        = {Large Language Models: A Survey of Surveys},
  year         = {2025},
  publisher    = {Zenodo},
  doi          = {10.5281/zenodo.17542778},
  url          = {[https://doi.org/10.5281/zenodo.17542778](https://doi.org/10.5281/zenodo.17542778)}
}
description: Acknowledgement

This work is supported by the Research Council of Norway through the secureIT project (IKTPLUSS #288787), and by the European Union through the Horizon Europe Marie Skłodowska-Curie Actions (#101151798).
DOI: 10.5281/zenodo.17542779
title: Replication package for "Large Language Models: A Survey of Surveys"

description: This replication package accompanies the paper "Large Language Models: A Survey of Surveys" by Max Hort, Fernando Vallecillos-Ruiz, and Leon Moonen, currently under review. A PDF preprint is included in this record.

The field of Large Language Models (LLMs) is rapidly expanding, with new research published daily. As a result, research interest and progress in LLMs have exploded, making it challenging to keep up. To help navigate this vast landscape, this work compiles and categorizes existing survey papers on LLMs. Most of these surveys have been published or posted in the past few years, providing a comprehensive and up-to-date overview of the field. We hope that our compilation can be helpful for researchers and practitioners who want to get a quick understanding of the key topics, trends, and future directions in LLM research.

This record contains an overview of the data and taxonomy for our study, as well as a BiBTeX bibliography file. These sources include a total of 984 publications, collected up to August 2025, extending beyond the 424 surveys analyzed in the initial paper (PDF preprint).

The data and preprint are distributed under the CC BY 4.0 license.

How to Cite

If you use this work or the accompanying dataset, please cite our paper. You can find the full paper and BibTeX file on Zenodo.

BibTeX Entry:



@misc{hort2025llmsurvey,
  author       = {Hort, Max and Vallecillos-Ruiz, Fernando and Moonen, Leon},
  title        = {Large Language Models: A Survey of Surveys},
  year         = {2025},
  publisher    = {Zenodo},
  doi          = {10.5281/zenodo.17542778},
  url          = {[https://doi.org/10.5281/zenodo.17542778](https://doi.org/10.5281/zenodo.17542778)}
}
description: Acknowledgement

This work is supported by the Research Council of Norway through the secureIT project (IKTPLUSS #288787), and by the European Union through the Horizon Europe Marie Skłodowska-Curie Actions (#101151798).
DOI: 10.5061/dryad.36n6p34
title: Data from: Early post-embryonic development in Ellipsostrenua (Trilobita, Cambrian, Sweden) and the developmental patterns in Ellipsocephaloidea

description: This study documents the early post-embryonic developmental stages
 (protaspides and early meraspides) of the Cambrian trilobite
 Ellipsostrenua granulosa (Ahlberg, 1984) from the Gärdsjön Formation of
 Jämtland, Sweden. The early protaspid stage is characterized by a circular
 outline of the exoskeleton, two pairs of fixigenal spines, a short
 preglabellar field, a genal swelling, and prominent bacullae. The late
 protaspid stage differs only in having the trunk portion discernible.
 Early meraspid cranidia are sub-rectangular with prominent palpebral
 lobes, a wide anterior margin, a proportionally long anterior branch of
 the facial suture and intergenal spines. Meraspid pygidia tentatively
 assigned to this species possess comparatively long macrospines. Small
 hypostomes associated with E. granulosa bear at least four pairs of
 marginal spines. A comparison of the early developmental stages of E.
 granulosa with some other species of Ellipsocephalidae and with species of
 the closely related Estaingiidae reveals several similarities. The
 conservative morphology of the early protaspid stage with only two pairs
 of fixigenal spines, the timing of the development of the trunk portion,
 and the presence of genal swellings and prominent bacullae could be
 phylogenetically informative. The range of size variation of the early
 protaspid stages in two families may be related either to taxonomical
 differences between Ellipsocephalidae and Estaingiidae, or to
 environmental differences in various paleogeographic settings.
description: Measurements of early
 post-embryonic developmental stages of Ellipsostrenua
 granulosaThis data file contains
 three measured parameters of early post-embryonic developmental stages of
 Ellipsostrenua granulosa, in particular cranidial length, cranidial width
 and intergenal spine separation.Supplementary_data_measurements.xlsx
DOI: 10.15468/dl.d8uyaq
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Montitega dealbata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 172 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001392-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.9b30b
title: Data from: Rate of novel host invasion affects adaptability of evolving RNA virus lineages

description: Although differing rates of environmental turnover should be consequential
 for the dynamics of adaptive change, this idea has been rarely examined
 outside of theory. In particular, the importance of RNA viruses in disease
 emergence warrants experiments testing how differing rates of novel host
 invasion may impact the ability of viruses to adaptively shift onto a
 novel host. To test whether the rate of environmental turnover influences
 adaptation, we experimentally evolved 144 Sindbis virus lineages in
 replicated tissue-culture environments, which transitioned from being
 dominated by a permissive host cell type to a novel host cell type. The
 rate at which the novel host ‘invaded’ the environment varied by
 treatment. The fitness (growth rate) of evolved virus populations was
 measured on each host type, and molecular substitutions were mapped via
 whole genome consensus sequencing. Results showed that virus populations
 more consistently reached high fitness levels on the novel host when the
 novel host ‘invaded’ the environment more gradually, and gradual invasion
 resulted in less variable genomic outcomes. Moreover, virus populations
 that experienced a rapid shift onto the novel host converged upon
 different genotypes than populations that experienced a gradual shift onto
 the novel host, suggesting a strong effect of historical contingency.
description: Fitness_Assay_DataFitness data for evolved Sindbis virus populations. Fitness is measured as viral titer (pfu/mL) on each cell type (BHK and CHO). Each virus population was assayed in triplicate on each host type. The ancestral Sindbis virus used to found experimental Sindbis lineages was assayed nine times on each host.
DOI: 10.5061/dryad.f4168
title: Data from: The earliest reef-building anthaspidellid sponge Rankenella zhangxianensis n. sp. from the Zhangxia Formation (Cambrian Series 3), Shandong Province, China

description: This study reports the earliest known reef-building anthaspidellid sponge,
 Rankenella zhangxianensis n. sp., from the Cambrian Series 3 (late Stage
 5–early Guzhangian) deposit of the Zhangxia Formation, Shandong Province,
 China. Rankenella zhangxianensis mostly occurs within
 Epiphyton-Rankenella-Cambroctoconus reefs, with minor occurrence from
 inter-reef grainstone. The species has anthaspidellid-type regular
 ladderlike spicule networks consisting of dendroclones and trabs, and is
 characterized by trabs parallel/subparallel to the gastral surface that
 diverge and meet the dermal surface, which is typical of the genus.
 Compared to R. mors and R. hamdii, reported from the late Cambrian Series
 2–late Cambrian Series 3 of Australia and the late Cambrian Series 3–early
 Furongian of Iran, respectively, R. zhangxianensis is characterized by a
 relatively thicker wall, high angle (~90°) between dermal surfaces and
 intersecting trabs, and minor occurrence of differentiated canals. On the
 other hand, R. zhangxianensis mainly shows obconical shape, which is far
 less diverse than the other two species showing conicocylindrical,
 digitate, explanate, or bowl shapes. These Cambrian Series 3 reefs from
 China are the ancestors of the Furongian anthaspidellid-microbial reefs
 and the Early Ordovician anthaspidellid-microbial reefs that flourished
 worldwide. They represent the resurgence of reef-building metazoans after
 the extinction of archaeocyaths at the end of Cambrian Series 2.
description: Supplementary1-Lee_et_alSize measurement data of sponge specimens