cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.jwstqjqfs
title: Parasitoid–host eavesdropping reveals temperature coupling of preferences to communication signals without genetic coupling

description: Receivers of acoustic communication signals evaluate signal features to
 identify conspecifics. Changes in the ambient temperature can alter these
 features, rendering species recognition a challenge. To maintain effective
 communication, temperature coupling—changes in receiver signal preferences
 that parallel temperature-induced changes in signal parameters—occurs
 among genetically coupled signallers and receivers. Whether eavesdroppers
 of communication signals exhibit temperature coupling is unknown. Here, we
 investigate if the parasitoid fly Ormia ochracea , an eavesdropper of
 cricket calling songs, exhibits song pulse rate preferences that are
 temperature coupled. We use a high-speed treadmill system to record
 walking phonotaxis at three ambient temperatures (21, 25, and 30°C) in
 response to songs that varied in pulse rates (20 to 90 pulses per second).
 Total walking distance, peak steering velocity, angular heading, and the
 phonotaxis performance index varied with song pulse rates and ambient
 temperature. The peak of phonotaxis performance index preference functions
 became broader and shifted to higher pulse rate values at higher
 temperatures. Temperature-related changes in cricket songs between 21 and
 30°C did not drastically affect the ability of flies to recognize cricket
 calling songs. These results confirm that temperature coupling can occur
 in eavesdroppers that are not genetically coupled with signallers.
description: Behavioural walking phonotactic responses were collected using a
 custom-made high-speed treadmill system. Raw data traces from the treadmll
 system were converted to response metrics (distance, latency, steering
 velocity, forward velocity, angular heading, phonotaxis performance index)
 in MATLAB. Preference functions based on the phonotaxis performance index
 data were fitted using a custom script written in MATLAB.
description: Data in CSV files can be opened using MS Excel.<br>Data in
 xlsx files can be opened using MS Excel.<br>*.m files can be opened
 in MATLAB
DOI: 10.5061/dryad.sf7m0cgbw
title: Related data of CG lightning attachment process

description: More and more optical records have exhibited that multiple upward leaders
 (MULs) occur frequently on a structure in the flash attachment
 process. An interesting issue is why a structure can continue to
 launch an upward leader (UL) after the first one appears. This
 phenomenon is analyzed in the present paper. Considering the
 influence of the leader behaviors on the ambient electric field, an
 improved 3-D fine-resolution lightning attachment model with MULs is
 established to simulate cloud-to-ground flash events with diverse leader
 spatial morphologies. The simulation results show that MULs may
 initiate almost simultaneously or with an obvious delay and the variation
 range of UL length is large. From this, the flash events of lightning
 terminating on a structure are divided into four scenarios and each
 scenario is analyzed. It can be found that the spatial location of the
 downward leader, the length and propagation direction of the
 first UL and the time interval from the inception of the first UL
 to final jump significantly affect the electric fields at top corners of
 structure and further affect the inception of the second UL. Based on
 qualitative analysis, four factors are proposed to explain why
 the above four scenarios happen.
description: The dataset provided is a set of relevant rules diagrams for CG
 lightning in an isolated building, which is derived from simulation
 results using a three-dimensional high-resolution lightning attachment
 model. The graphics were drawn using Matlab programming
 platform.
description: These data can be opened using Matlab.
description: # Related Data of CG Lightning Attachment Process The dataset provided is
 a set of relevant rules diagrams for CG lightning in an isolated building,
 which is derived from simulation results using a three-dimensional
 high-resolution lightning attachment model. The dataset covers spatial
 three-dimensional behaviors of positive and negative leaders, changes in
 electric fields on isolated buildings, and factors related to multiple
 leader initiations. The content involves the three-dimensional behavior of
 positive and negative leaders, changes in electric field on an isolated
 building, and factors related to the inception of multiple upward leaders.
 ## Description of the data and file structure The dataset includes
 three-dimensional spatial plots, electric field diagrams, and relevant
 parameter graphs in fig file format. These files can be easily accessed
 using Matlab software.
DOI: 10.5061/dryad.sn02v6x8v
title: Supplementary data for: A Silurian (Homerian) pelmatozoan echinoderm fauna from west-central Ohio

description: A diverse echinoderm fauna lived in reef and non-reef Silurian facies of
 the upper Midwestern United States. However, these faunas are dominantly
 preserved in dolostones with fossils preserved only as molds and casts,
 and fossils from dolostone facies have not been documented to the extent
 of Silurian crinoids in non-dolostone strata. Herein, an echinoderm fauna
 is described from the dolostones of the Cedarville Member of the Laurel
 Limestone (Wenlock, Homerian) from the Pepcon Quarry in west-central Ohio.
 The described fauna contains blastoids, hemicosmitoids, and crinoids,
 including Troosticrinus subcylindricus (Hall and Whitfield, 1875);
 Caryocrinites sp.; an unidentifiable diplobathrid camerate,
  Periechocrinus tennesseensis (Hall and Whitfield, 1875);
 Periechocrinus egani? Miller, 1881; Stiptocrinus farringtoni (Slocom,
 1908); Calliocrinus primibrachialis Busch, 1943; Calliocrinus popplemani
 n. sp.; Calliocrinus hadros n. sp.; and Lecanocrinus sp. Generic concepts
 for the Eucalyptocrinitidae are clarified; and, surprisingly,
 Eucalyptocrinites is absent from this fauna.
description: Fossil specimens were collected by the authors in the field.
 Specimens were cleaned, molds and casts were made of some.
DOI: 10.5061/dryad.1rn8pk106
title: Public attitudes toward Biscayne Bay in South Florida

description: This data set was collected using Centiment survey panels, limited to
 English and Spanish speaking adults in the Miami-Dade metro area.
 Questions and scales covered a range of activities, values and attitudes
 associated with the marine estuary Biscayne Bay.
DOI: 10.6076/d1hc71
title: TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees

description: Phylogenetic trees include errors for a variety of reasons. We argue that
 one way to detect errors is to build a phylogeny with all the data and
 then detect taxa that artificially inflate the tree diameter. We formulate
 an optimization problem that seeks to find k leaves that can be removed to
 reduce the tree diameter maximally. We present a polynomial time solution
 to this “k-shrink” problem. Given this solution, we then use
 non-parametric statistics to find an outlier set of taxa that have an
 unexpectedly high impact on the tree diameter. We test our method,
 TreeShrink, on five biological datasets, and show that it is more
 conservative than rogue taxon removal using RogueNaRok. When the amount of
 filtering is controlled, TreeShrink outperforms RogueNaRok in three out of
 the five datasets, and they tie in another dataset.
description: All the raw data are obtained from other publications as shown
 below. We further analyzed the data and provide the results of the
 analyses here. The methods used to analyze the data are described in the
 paper. 
 Dataset Species
 Genes 
 Download
 
 Plants  104
 852 
 DOI 10.1186/2047-217X-3-17 Mammals 37 424 DOI 10.13012/C5BG2KWG Insects 144 1478 http://esayyari.github.io/InsectsData Cannon 78 213 DOI 10.5061/dryad.493b7 Rouse  26 393 DOI 10.5061/dryad.79dq1 Frogs 164 95 DOI 10.5061/dryad.12546.2
DOI: 10.5061/dryad.qv9s4mwkv
title: Direct and indirect estimates of dispersal support strong juvenile philopatry and male-biased dispersal in a freshwater turtle species (Emys orbicularis)

description: Dispersal has major impacts on population dynamics, population genetics
 and evolution and is also critical for population management and
 conservation. Dispersal is frequently sex- and age-specific, but current
 knowledge is strongly taxonomically biased toward birds and mammals. Here,
 we provide estimates of dispersal in a threatened freshwater turtle
 species, the European pond turtle Emys orbicularis. Based on 15
 years of Capture-Mark-Recapture (CMR) monitoring and DNA samples from 194
 individuals, we quantified both demographic and genetic dispersal between
 three sites separated by 1.5 to 3.5 km. We also investigated the effect of
 age and sex on dispersal. Overall, direct (CMR) and indirect (genetic)
 approaches provided consistent results showing that the studied sites are
 well connected with a flow of about one to three dozen migrants per
 generation. Dispersal was both age- and sex-biased in this species, with
 frequent dispersal of adult males and a strong philopatry of juveniles (of
 both sexes) and adult females. The strong philopatry of juveniles
 contrasts with the recurrent higher dispersal rate in young birds and
 mammals and shows the relevance of investigating dispersal in various
 taxonomic groups. Our results also provide useful information for the
 conservation of European pond turtle populations.
description: These data have been collected across 15 years (1997-2011) on three
 populations located in Camargue, Southern France (see manuscript for
 details). Data\_Fayetal2023FB contains three datasets: **CMR\_adults**
 presents the individual capture histories (0=not detected, 1=detected at
 Fasses, 2=detected at Esquineau) for adult individuals obtained from
 capture-mark-recapture monitoring. Each line represents an individual. Sex
 is given in the SEX column (1=female, 2=male). **CMR\_juveniles** presents
 the individual capture histories (0=not detected, 1=detected) for
 juveniles individuals obtained from capture-mark-recapture monitoring.
 Each line represents an individual. Their age of marking is given in the
 AGE column (1=1 year-old, 2=2 year old, 3=3 years old). **GENET\_STRUC**
 present the genetic information analyzed with STRUCTURE. Each line
 represents an individual. Data include the 11 loci, SEX (1=female,
 2=male), SITE (1= Draille, 2= Esquineau, 3= Faïsses) and the DISPERSAL
 state of the individual e.i, if this individual is known as migrant from
 the CMR monitoring, (0=no, 1=yes).
DOI: 10.5061/dryad.gxd2547rj
title: Data associated with: Applying remote sensing for large-landscape problems: Inventorying and tracking habitat recovery for a broadly distributed Species At Risk

description: Anthropogenic habitat alteration is leading to the reduction of global
 biodiversity. Consequently, there is an imminent need to understand the
 state and trend of habitat alteration across broad areas. In North
 America, habitat alteration has been linked to the decline of threatened
 woodland caribou. As such, habitat protection and restoration are critical
 measures to support recovery of self-sustaining caribou populations. Broad
 estimates of habitat change through time have set the stage for
 understanding the status of caribou habitat. However, the lack of updated
 and detailed data on post-disturbance vegetation recovery is an impediment
 to recovery planning and monitoring restoration effectiveness. Advances in
 remote sensing tools to collect high-resolution data at large spatial
 scales are beginning to enable ecological studies in new ways to support
 ecosystem-based and species-based management. We used semi-automated and
 manual methodologies to fuse photogrammetry point clouds (PPC) from
 high-resolution aerial imagery with wide-area Light Detection and Ranging
 (LiDAR) data to quantify vegetation structure (height, density, class) on
 disturbances associated with caribou declines. We also compared vegetation
 heights estimated from the semi-automated PPC-LiDAR fusion to heights
 estimated in the field, using stereoscopic interpretation, and using
 multi-channel TiTAN LiDAR. Vegetation regrowth was occurring on many of
 the disturbance types, though there was local variability in the type,
 height, and density of vegetation. Heights estimated using PPC-LiDAR
 fusion were highly correlated (r ≥ 0.87 in all cases) with heights
 estimated using stereomodels, TiTAN multi-channel LiDAR, and field
 measurements. We demonstrated that PPC-LiDAR fusion can be operationalized
 over large areas to collect comprehensive and consistent vegetation data
 across landscape levels, providing opportunities to link fine-resolution
 remote sensing to landscape-scale ecological studies. Crucially, these
 data can be used to estimate rates of habitat recovery at resolutions that
 are not feasible using more commonly used satellite-based sensors,
 bridging the gap between resolution and extent.  Such data are
 needed to achieve effective and efficient habitat monitoring to support
 caribou recovery efforts, as well as a myriad of additional forest
 management needs.
description: Please see methods in associated manuscript. Spatial data are
 provided in EPSG:26911 - NAD83 / UTM zone 11N.
description: We used ArcGIS 10.7.1. QGIS, R, or similar open-source software
 are alternatives.
DOI: 10.5061/dryad.gb5mkkwvm
title: Assessment of genetic diversity, population structure and wolf-dog hybridisation in the Eastern Romanian Carpathian wolf population

description: The Carpathian Mountains were always inhabited by grey wolves and present
 one of the largest distribution areas in Europe, comprising between 2,300
 to 2,700 individuals in Romania. To date, however, relatively little is
 known about the Romanian wolf population. We aimed to provide a first
 assessment of genetic diversity, population structure and wolf-dog
 hybridisation based on 444 mostly non-invasively collected samples in the
 Eastern Romanian Carpathians. Pack reconstruction and analysis of
 population genetic parameters were performed with mitochondrial DNA
 control-region sequencing and microsatellite genotyping. We found
 relatively high levels of genetic diversity, which is similar to values
 found in previous studies on Carpathian wolves from Poland and Slovakia,
 as well as to the long-lasting Dinaric-Balkan wolf population. We found no
 significant population structure in our study region, suggesting effective
 dispersal and admixture. Analysis of wolf-dog hybridisation using a Single
 Nucleotide Polymorphism panel optimised for hybrid detection revealed low
 rates of admixture between wolves and domestic dogs. Our results provide
 evidence for the existence of a genetically viable wolf population in the
 Romanian Carpathians. The genetic data obtained in this study may serve as
 valuable baseline information for the elaboration of monitoring standards
 and management plans for wolves in Romania.
DOI: 10.5061/dryad.b2rbnzsmq
title: Microbial-host-isozyme analyses reveal microbial DPP4 as a potential antidiabetic target

description: A mechanistic understanding of how microbial proteins affect the host
 could yield deeper insights into gut microbiota–host cross-talk. We
 developed an enzyme activity-screening platform to investigate how gut
 microbiota-derived enzymes might influence host physiology. We discovered
 that dipeptidyl peptidase 4 (DPP4) is expressed by specific bacterial taxa
 of the microbiota. Microbial DPP4 was able to decrease the active glucagon
 like peptide-1 (GLP-1) and disrupt glucose metabolism in mice with a leaky
 gut. Furthermore, the current drugs targeting human DPP4, including
 sitagliptin, had little effect on microbial DPP4. Using high-throughput
 screening, we identified daurisoline-d4 (Dau-d4) as a selective microbial
 DPP4 inhibitor that improves glucose tolerance in diabetic mice.
description: On Dryad: 16S rRNA gene amplicon sequencing data Fastq files from S1B-0 to
 S1E20 are 16S rRNA gene amplicon sequencing data. representing the
 bacteria composition in human stool samples and related ex vivo
 communities in fig. S1B, fig. S1D and fig.S1E. Library strategy: AMPLICON,
 library building type: single, sequencing platform: ILLUMINA, sequencing
 instrument: Illumina HiSeq 1500. The metagenomic data of human and animal
 samples. Fastq files from 1-1 to A6-6 are the metagenomic data including
 57 human stool samples and 36 mouse faces samples. The human samples ID
 (1-57) correspond to the ID in supplementary table 4. The mouse samples
 (A1-1 to 16-6) were fecal microbiota transplant experiments in fig. S12 D
 to F. Each sample contains two sequencing data from paired-end sequencing.
 Library strategy: METAGENOMIC, library building type: paired, sequencing
 platform: ILLUMINA, sequencing instrument: Illumina HiSeq 1500. On Zenodo:
 Source data of Figure 1-6 and supplementary figure 1-21. The source data
 are presented in 27 separate Excel files and each sheet represent one
 panel of each figure. Phylo-tree Phylo-tree is the raw data of
 phylogenetic analysis of microbial DPP4 protein sequences in fig. S4C.
 Supplementary methods Supplementary methods file is the process for
 isoenzyme activity detection, related to Fig 1.
DOI: 10.5061/dryad.5hqbzkhbm
title: Data for: Periplasmic biomineralization for semi-artificial photosynthesis

description: Semiconductor-based biointerfaces are typically established either on the
 surface of the plasma membrane or within the cytoplasm. In gram-negative
 bacteria, the periplasmic space, characterized by its confinement and the
 presence of numerous enzymes and peptidoglycans, offers additional
 opportunities for biomineralization, allowing for non-genetic modulation
 interfaces. Here, we demonstrate semiconductor nanocluster precipitation
 containing single- and multiple-metal elements within the periplasm, as
 observed through various electron- and X-ray-based imaging techniques. The
 periplasmic semiconductors are metastable and display defect-dominant
 fluorescent properties. Surprisingly, the defect-rich (i.e., the
 low-grade) semiconductor nanoclusters produced in situ can still increase
 adenosine triphosphate levels and malate production when coupled with
 photosensitization. We expand the sustainability levels of the biohybrid
 system to include reducing heavy metals at the primary level, building
 living bioreactors at the secondary level, and creating semi-artificial
 photosynthesis at the tertiary level. The biomineralization-enabled
 periplasmic biohybrids have the potential to serve as defect-tolerant
 platforms for diverse sustainable applications.
DOI: 10.25338/b8892t
title: Data from: Analgesic effect of the mint terpenoid L-Carvone in sheep

description: Objective: To determine whether L‑carvone increases the voltage
 threshold response to a noxious electrical stimulus in sheep. Study
 Design: Prospective, blinded, randomized, crossover experimental study.
 Animals: A group of 6 adult sheep. Methods: Sheep were instrumented with
 cranial dorsothoracic subcutaneous copper electrodes. A stimulator
 delivered a 10ms square wave at 50 pps starting at 0.1V with a 0.2V/s
 ramp. The stimulus stopped once two observers who were blinded to
 treatment noted a behavioral pain response or when a 15V cut-off was
 reached. Next, 0.15 mL kg−1 of either a 50% L‑carvone solution or a
 saline-vehicle control was administered intramuscularly, and electrical
 threshold responses were measured every 5-to-15 min over a 6-hour period
 using methods identical to the baseline. One week following the first
 treatment (L‑carvone or control), sheep were studied using identical
 methods with the second treatment (control or L‑carvone). Drug and time
 effects were evaluated using a two-way repeated-measures ANOVA, and
 pairwise comparisons were evaluated with Holm-Sidák tests with values of p
 &lt; 0.05 considered significant. Results: L-carvone significantly
 increased voltage threshold responses for most time points up to 75
 minutes compared to baseline and compared to the saline control. The last
 time point with a significantly different response between L‑carvone and
 saline treatments was 5 hours after drug administration. The
 saline-vehicle control decreased voltage threshold responses at several
 time points after 3 hours. Conclusions and Clinical Relevance:
 Intramuscular L‑carvone is analgesic in sheep, although the
 ethanol-propylene glycol vehicle may cause mild hyperalgesia. This study
 demonstrates that a food-derived compound can be used to relieve pain in a
 food-producing animal.
description: # Analgesic effect of the mint terpenoid L-carvone in sheep **Description
 of the data and file structure** * Voltage Threshold dryad.xlsx: This file
 contains the stimulus threshold (in volts) to produce a behavioral
 response to the noxious stimulus. Responses in animals treated with
 L-carvone are on the L-carvone data page. Responses for control animals
 are on the saline data page. - respiratory rate dryad.xlsx: This file
 contains the respiratory rate (breaths/min) counted before voltage
 threshold testing at each time point. Responses in animals treated with
 L-carvone are on the L-carvone data page. Responses for control animals
 are on the saline data page. * eating periods dryad.xlsx: This file
 contains the number of periods (out of 28 measurement periods) in which
 animals were observed eating during treatment with L-carvone and treatment
 with the saline control. In the data sets, the time indicates the number
 of minutes following IM (intra-muscular) administration of either
 L-carvone or the saline control. The 6 sheep are identified as follows:
 Shp22080, Shp22100, Shp22104, Shp22129, Shp22130, Shp22134