cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13160132.v1
title: BiCoP kinetic solar wind simulation data (MC)

description: Data related to the submitted article with a title: The interplay between ambipolar electric field and Coulomb collisions in the solar wind acceleration region.<br>This is the data set from the medium collisional (MC) simulation run.<br>
DOI: 10.6084/m9.figshare.13160108
title: keras_object_detection_for_1k_dataset

description: Keras base, object detector for 1000 images.
DOI: 10.6084/m9.figshare.13160108.v1
title: keras_object_detection_for_1k_dataset

description: Keras base, object detector for 1000 images.
DOI: 10.5286/isis.e.rb2010354-2
title: Unravelling the nature of the polyhydrated sulfate deposits on Mars

description: Hydrated sulfates are likely to be the dominant water reservoir in the equatorial region of Mars forming massive stratified deposits. Hence their detailed mineralogical characterisation is likely critical to understand the aqueous history as well as the present-day equatorial water cycle of our neighbouring planet. MgSO4·4H2O is the most promising candidate to form the bulk of the equatorial sulfate deposits whereas FeSO4·4H2O appears to be unstable under martian surface conditions. We have recently carried out Synchrotron XRD of both compounds between 85 – 300 K, revealing interesting intrinsic patterns of behaviour and differences between the Mg and Fe compounds. To explore this further, we propose to characterise FeSO4·4H2O and MgSO4·4H2O down to 10 K on HRPD and to determine the stability of the aforementioned compounds under simulated martian surface conditions on I11.
DOI: 10.5281/zenodo.4147241
title: 123

description: Hellow world!
DOI: 10.5281/zenodo.3972112
title: Extensive literature search for grayanotoxins and 5-hydroxymethylfurfural - summary tables and EndNote libraries

description: An extensive literature search to identify and collect studies related to the toxicity of grayanotoxins and 5-hydroxymethylfurfural (5-HMF) was performed in the three databases PubMed, Web of Science and SciFinder® for six and four Areas, respectively. After combination of the searches from the three databases and removal of the duplicates, the total number of references for the grayanotoxins was 652 and for 5-HMF Area 1b was 3,862, for Area 2b was 37, for Area 3b was 221 and for Area 4b was 500. The evaluation of all retrieved references for relevance by screening the title and abstract (if available) and applying eligibility criteria (inclusion/exclusion) resulted in a total number of relevant references for the grayanotoxins for Area 1a of 71, for Area 2a of 3, for Area 3a of 5, for Area 4a of 75, for Area 5a of 141, and for Area 6a of 78 and for 5-HMF for Area 1b of 55, for Area 2b of 14, for Area 3b of 15 and for Area 4b of 8.
description: EU; XLSX; biocontam@efsa.europa.eu
DOI: 10.5281/zenodo.3972111
title: Extensive literature search for grayanotoxins and 5-hydroxymethylfurfural - summary tables and EndNote libraries

description: An extensive literature search to identify and collect studies related to the toxicity of grayanotoxins and 5-hydroxymethylfurfural (5-HMF) was performed in the three databases PubMed, Web of Science and SciFinder® for six and four Areas, respectively. After combination of the searches from the three databases and removal of the duplicates, the total number of references for the grayanotoxins was 652 and for 5-HMF Area 1b was 3,862, for Area 2b was 37, for Area 3b was 221 and for Area 4b was 500. The evaluation of all retrieved references for relevance by screening the title and abstract (if available) and applying eligibility criteria (inclusion/exclusion) resulted in a total number of relevant references for the grayanotoxins for Area 1a of 71, for Area 2a of 3, for Area 3a of 5, for Area 4a of 75, for Area 5a of 141, and for Area 6a of 78 and for 5-HMF for Area 1b of 55, for Area 2b of 14, for Area 3b of 15 and for Area 4b of 8.
description: EU; XLSX; biocontam@efsa.europa.eu
DOI: 10.21227/7xn4-dx30
title: Laser-assisted nulti-angle DIC microscopy of red blood cells

description: See our next articles.
DOI: 10.21227/t34r-9902
title: Laser-assisted nulti-angle DIC microscopy of red blood cells

description: See our next articles.
DOI: 10.21227/fd3n-mk72
title: Laser-assisted multi-angle DIC microscopy of red blood cells

description: See our next articles.
DOI: 10.6084/m9.figshare.13160144
title: Data 2

description: <b><i>Helicobacter pylori</i></b><b> 23S rRNA gene </b><b>A2142G, A2143G, T2182C, and C2195T</b><b> mutations associated with clarithromycin resistance detected in Sudanese patients </b>
DOI: 10.6084/m9.figshare.13160144.v2
title: Data 2

description: <b><i>Helicobacter pylori</i></b><b> 23S rRNA gene </b><b>A2142G, A2143G, T2182C, and C2195T</b><b> mutations associated with clarithromycin resistance detected in Sudanese patients </b>
DOI: 10.6084/m9.figshare.13160144.v1
title: Data 2

description: <b><i>Helicobacter pylori</i></b><b> 23S rRNA gene </b><b>A2142G, A2143G, T2182C, and C2195T</b><b> mutations associated with clarithromycin resistance detected in Sudanese patients </b>
DOI: 10.5281/zenodo.3823353
title: Computational dataset for the manuscript "Tethered agonist exposure in intact adhesion/class B2 GPCRs through intrinsic structural flexibility of the GAIN domain""

description: This repository provides url links to the MDsrv sessions for the manuscript: <em>Tethered agonist exposure in intact adhesion/class B2 GPCRs through intrinsic structural flexibility of the GAIN domain</em>. <strong>Link 1</strong>: L1 dynamic: proteinformatics.charite.de/html/mdsrvdev.html?load=file://_aGPCRs/L1.ngl <strong>Link 2</strong>: G1 dynamic: proteinformatics.charite.de/html/mdsrvdev.html?load=file://_aGPCRs/G1.ngl <strong>Link 3</strong>: E5 static: proteinformatics.charite.de/html/mdsrvdev.html?load=file://_aGPCRs/E5_crevice.ngl <strong>Link 4: </strong>E5 dynamic: proteinformatics.charite.de/html/mdsrvdev.html?load=file://_aGPCRs/E5.ngl <strong>Link 5: </strong>E5 +3 static: proteinformatics.charite.de/html/mdsrvdev.html?load=file://_aGPCRs/E5+3.ngl <strong>Link 6: </strong>E5 +6 static: proteinformatics.charite.de/html/mdsrvdev.html?load=file://_aGPCRs/E5+6.ngl <strong>Link 7: </strong>E2 dynamic: proteinformatics.charite.de/html/mdsrvdev.html?load=file://_aGPCRs/E2.ngl <strong>Link 8: </strong>L1 Phe+3Lys dynamic: proteinformatics.charite.de/html/mdsrvdev.html?load=file://_aGPCRs/L1Phe+3Lys.ngl <strong>Link 9: </strong>L1 Leu+6Lys dynamic: proteinformatics.charite.de/html/mdsrvdev.html?load=file://_aGPCRs/L1Leu+6Lys.ngl <strong>Link 10: </strong>L1 dynamic (ribbon representation): proteinformatics.charite.de/html/mdsrvdev.html?load=file://_aGPCRs/L1Ribbon.ngl
DOI: 10.17632/shd3wcczsr.2
title: Mathematical modelling for the optimization of cellulase production
DOI: 10.6084/m9.figshare.13160192
title: Supplementary Material for: A Novel Method for Sleep-Stage Classification Based on Sonification of Sleep Electroencephalogram Signals Using Wavelet Transform and Recurrent Neural Network

description: <b><i>Introduction:</i></b> Visual sleep-stage scoring is a time-consuming technique that cannot extract the nonlinear characteristics of electroencephalogram (EEG). This article presents a novel method for sleep-stage differentiation based on sonification of sleep-EEG signals using wavelet transform and recurrent neural network (RNN). <b><i>Methods:</i></b> Two RNNs were designed and trained separately based on a database of classical guitar pieces and Kurdish tanbur Makams using a long short-term memory model. Moreover, discrete wavelet transform and wavelet packet decomposition were used to determine the association between the EEG signals and musical pitches. Continuous wavelet transform was applied to extract musical beat-based features from the EEG. Then, the pretrained RNN was used to generate music. To test the proposed model, 11 sleep EEGs were mapped onto the guitar and tanbur frequency intervals and presented to the pretrained RNN. Next, the generated music was randomly presented to 2 neurologists. <b><i>Results:</i></b> The proposed model classified the sleep stages with an accuracy of &gt;81% for tanbur and more than 93% for guitar musical pieces. The inter-rater reliability measured by Cohen’s kappa coefficient (<i>κ</i>) revealed good reliability for both tanbur (<i>κ</i> = 0.64, <i>p</i> &lt; 0.001) and guitar musical pieces (<i>κ</i> = 0.85, <i>p</i> &lt; 0.001). <b><i>Conclusion:</i></b> The present EEG sonification method leads to valid sleep staging by clinicians. The method could be used on various EEG databases for classification, differentiation, diagnosis, and treatment purposes. Real-time EEG sonification can be used as a feedback tool for replanning of neurophysiological functions for the management of many neurological and psychiatric disorders in the future.
DOI: 10.6084/m9.figshare.13160156
title: Supplementary Material for: Utility and Results from a Patient-Reported Online Survey in Myotonic Dystrophies Types 1 and 2

description: <b><i>Introduction:</i></b> Myotonic dystrophies (DMs) are the most frequent autosomal dominant neuromuscular disorders in adults. Our objective was to evaluate the utility of an online survey in a rare disease as well as to assess and compare the onset and the progression of clinical symptoms in patients with myotonic dystrophy types 1 (DM1) and 2 (DM2). <b><i>Methods:</i></b> We conducted a patient’s reported online survey assessing demographics, disease-related symptoms (age of onset, first symptom, time of diagnosis, current symptoms, inheritance, and family history) combined with capturing current symptoms by validated questionnaires. The questionnaire consisted of open, closed, single- and multiple-choice questions. Multiple answers were possible in some cases. Patients with genetically confirmed DM1 or DM2 who were registered in the German DM registry or the <i>Deutsche Gesellschaft für Muskelkranke e.V.</i> – Diagnostic Group for DMs were invited to participate in this online survey. We calculated descriptive and exploratory analysis, where applicable. <b><i>Results:</i></b> Out of 677 data sets from respondents, 394 were suitable for final analysis, containing completed questionnaires from 207 DM1 (56% female) and 187 DM2 patients (71% female). The median age of onset was 28 years for DM1 and 35 years for DM2. Muscular symptoms were most frequently reported as the first symptom. The onset of myotonia was earlier than the onset of muscle weakness in both DM1 and DM2. Forty-four percent of patients with DM1 and one-third of patients with DM2 indicated muscle weakness as the first symptom. Patients with DM1 were significantly younger when experiencing muscle weakness as first symptom. Fatigue was only mentioned by a small fraction of patients as a first symptom but increased significantly in the course of the disease. There was no statistically significant difference in the incidence of cataracts, cardiac symptoms, and gastrointestinal symptoms between DM1 and DM2. Falls were reported almost equally in both groups, and most of the patients reported 2–3 falls within the past year. <b><i>Discussion:</i></b> Overall, as our results are consistent with the results of clinical studies and online registries, it can be assumed that this type of systematic gathering of data from patients with rare diseases is useful and provides realistic and appropriate results. Due to the nature of online surveys and the absence of an assessor, some uncertainty remains. Furthermore, survey frauds cannot be completely excluded. An additional clinical assessment could confirm the given information and will improve the utility and validity of reported symptoms participants provide in online surveys. Therefore, we recommend a combination of data collecting by online surveys and clinical assessments.
DOI: 10.6084/m9.figshare.13160156.v1
title: Supplementary Material for: Utility and Results from a Patient-Reported Online Survey in Myotonic Dystrophies Types 1 and 2

description: <b><i>Introduction:</i></b> Myotonic dystrophies (DMs) are the most frequent autosomal dominant neuromuscular disorders in adults. Our objective was to evaluate the utility of an online survey in a rare disease as well as to assess and compare the onset and the progression of clinical symptoms in patients with myotonic dystrophy types 1 (DM1) and 2 (DM2). <b><i>Methods:</i></b> We conducted a patient’s reported online survey assessing demographics, disease-related symptoms (age of onset, first symptom, time of diagnosis, current symptoms, inheritance, and family history) combined with capturing current symptoms by validated questionnaires. The questionnaire consisted of open, closed, single- and multiple-choice questions. Multiple answers were possible in some cases. Patients with genetically confirmed DM1 or DM2 who were registered in the German DM registry or the <i>Deutsche Gesellschaft für Muskelkranke e.V.</i> – Diagnostic Group for DMs were invited to participate in this online survey. We calculated descriptive and exploratory analysis, where applicable. <b><i>Results:</i></b> Out of 677 data sets from respondents, 394 were suitable for final analysis, containing completed questionnaires from 207 DM1 (56% female) and 187 DM2 patients (71% female). The median age of onset was 28 years for DM1 and 35 years for DM2. Muscular symptoms were most frequently reported as the first symptom. The onset of myotonia was earlier than the onset of muscle weakness in both DM1 and DM2. Forty-four percent of patients with DM1 and one-third of patients with DM2 indicated muscle weakness as the first symptom. Patients with DM1 were significantly younger when experiencing muscle weakness as first symptom. Fatigue was only mentioned by a small fraction of patients as a first symptom but increased significantly in the course of the disease. There was no statistically significant difference in the incidence of cataracts, cardiac symptoms, and gastrointestinal symptoms between DM1 and DM2. Falls were reported almost equally in both groups, and most of the patients reported 2–3 falls within the past year. <b><i>Discussion:</i></b> Overall, as our results are consistent with the results of clinical studies and online registries, it can be assumed that this type of systematic gathering of data from patients with rare diseases is useful and provides realistic and appropriate results. Due to the nature of online surveys and the absence of an assessor, some uncertainty remains. Furthermore, survey frauds cannot be completely excluded. An additional clinical assessment could confirm the given information and will improve the utility and validity of reported symptoms participants provide in online surveys. Therefore, we recommend a combination of data collecting by online surveys and clinical assessments.
DOI: 10.5281/zenodo.4133861
title: Imperial College London COVID-19 preprints and reports Jan - Aug 20

description: Preprints and reports published by Imperial College London authors between Jan - Aug 2020. Relevancy defined by "2019-nCoV", "COVID-19", "SARS-CoV-2" or "coronavirus" in Title.
DOI: 10.5281/zenodo.4133860
title: Imperial College London COVID-19 preprints and reports Jan - Aug 20

description: Preprints and reports published by Imperial College London authors between Jan - Aug 2020. Relevancy defined by "2019-nCoV", "COVID-19", "SARS-CoV-2" or "coronavirus" in Title.
DOI: 10.6084/m9.figshare.13158065
title: R0312_20191202a_videos

description: Rat 0312, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.5281/zenodo.4153438
title: Etablissements ayant répondu à l'enquête du GTSO-Données

description: Ce jeu de données contient la liste des établissements ayant répondu à l'enquête du groupe Données du GTSO-Couperin et l'identifiant de leur réponse, dans un fichier en format csv et dans un fichier en format xlsx. Certains établissements ayant demandé à ce que leur réponse soit pseudonymisée, ces documents sont confidentiels. Ils ne seront communiqués qu'à des fins de recherche dans le but d'analyser l'enquête avec d'autres clés d'analyse que les informations actuellement disponibles qui sont la taille de l'établissement et son type. Par exemple, les disciplines des établissements ayant répondu.
DOI: 10.5281/zenodo.4153437
title: Etablissements ayant répondu à l'enquête du GTSO-Données

description: Ce jeu de données contient la liste des établissements ayant répondu à l'enquête du groupe Données du GTSO-Couperin et l'identifiant de leur réponse, dans un fichier en format csv et dans un fichier en format xlsx. Certains établissements ayant demandé à ce que leur réponse soit pseudonymisée, ces documents sont confidentiels. Ils ne seront communiqués qu'à des fins de recherche dans le but d'analyser l'enquête avec d'autres clés d'analyse que les informations actuellement disponibles qui sont la taille de l'établissement et son type. Par exemple, les disciplines des établissements ayant répondu.
DOI: 10.5281/zenodo.4147847
title: Der Notenbestand von Gertrud Warneke (Anhang)

description: These spreadsheets are an appendix to an essay that has been published in print and should thus be made digitally available to readers. The essay deals with a collection of piano sheet music which has been analyzed as a musicological research object with regard to repertoire and traces of use and is included in the commemorative publication for the 60th birthday of Prof. Rebecca Grotjahn. It is possible to download the original Excel files and the generated PDF files.
DOI: 10.5281/zenodo.4147846
title: Der Notenbestand von Gertrud Warneke (Anhang)

description: These spreadsheets are an appendix to an essay that has been published in print and should thus be made digitally available to readers. The essay deals with a collection of piano sheet music which has been analyzed as a musicological research object with regard to repertoire and traces of use and is included in the commemorative publication for the 60th birthday of Prof. Rebecca Grotjahn. It is possible to download the original Excel files and the generated PDF files.
DOI: 10.6084/m9.figshare.13158065.v1
title: R0312_20191202a_videos

description: Rat 0312, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.5281/zenodo.4153461
title: Prognostic Significance of Deep Learning-Based Tumor-Infiltrating Lymphocyte Assessment for Triple-Negative Breast Cancer

description: The quantified manual and auto sTILs scores for the TNBC patiens from TCGA-BRCA cohort presented in the article "Prognostic Significance of Deep Learning-Based Tumor-Infiltrating Lymphocyte Assessment for Triple-Negative Breast Cancer" which is currently under review.
DOI: 10.5281/zenodo.4153460
title: Prognostic Significance of Deep Learning-Based Tumor-Infiltrating Lymphocyte Assessment for Triple-Negative Breast Cancer

description: The quantified manual and auto sTILs scores for the TNBC patiens from TCGA-BRCA cohort presented in the article "Prognostic Significance of Deep Learning-Based Tumor-Infiltrating Lymphocyte Assessment for Triple-Negative Breast Cancer" which is currently under review.
DOI: 10.6084/m9.figshare.13159811
title: CP-CHILD, a three-class colon polyp dataset

description: CP-CHILD records the colonoscopy data of children. The dataset is in a folder named “CP-CHILD”. There are two subfolders under the “CP-CHILD” folder, “Train” and “Test”. The “Train” folder contains 4600 images in total, and “Test” folder contains 1100 images. The images are all taken by Olympus PCF-H290DI. “Train” folder contains three subfolders: “Normal”, “Polyp” and “Others”, which correspond to normal colon, colon polyp, and other colon diseases, respectively. The “Normal” contains 3000 normal colon images, the “Polyp” folder contains 800 polyp images, and the “Others” contains 800 other colon disease images. Similarly, the “Test” folder also contains three subfolders. The “Normal” contains 700 normal colon images, the “Polyp” contains 200 polyp images, and the “Others” contains 200 other colon disease images. CP-CHILD-DA is the dataset obtained by data enhancement of of the data in CP-CHILD dataset. There are two subfolders under the “CP-CHILD-DA” folder, “Train-DA” and “Test-DA”. The “Train-DA” folder contains 17000 images in total, and “Test-DA” folder contains 5800 images. “Train-DA” folder contains three subfolders: “Normal-DA”, “Polyp-DA” and “Others-DA”. The “Normal-DA” contains 11000 normal colon images, the “Polyp-DA” folder contains 3000 polyp images, and the “Others-DA” contains 3000 other colon disease images. Similarly, the “Test-DA” folder also contains three subfolders. The “Normal-DA” contains 3800 normal colon images, the “Polyp-DA” contains 1000 polyp images, and the “Others-DA” contains 1000 other colon disease images.
DOI: 10.25919/5f9aaa3b3a6a5
title: Parkes observations for project P1063 semester 2020APRS_23

description: We propose to use the Parkes UWL receiver for monitoring a small sub-set of the FAST-discovered pulsars, with special properties. The Parkes UWL system provides a unique capability for studying the pulsars over wide bandwidths. The observation proposed will provide significant insight into the special emission properties of these new discoveries and facilitate science.
DOI: 10.6084/m9.figshare.13160264.v1
title: Tencent cultural policy entrepreneur_Dataset.xlsx

description: The chronological events timeline of Tencent Neo-Culture Creativity and relevant cultural policy changes in China between 2011 and 2019
DOI: 10.5281/zenodo.4153478
title: Supplementary Materials: Table S1: Probabilities of loss of 815 rare bands.

description: Table S1: Probabilities of loss of 815 rare bands.
DOI: 10.5281/zenodo.4153477
title: Supplementary Materials: Table S1: Probabilities of loss of 815 rare bands.

description: Table S1: Probabilities of loss of 815 rare bands.
DOI: 10.15129/46582865-502a-43be-907f-bdc41032be1e
title: Data for: "Ratiometric sensing of fluoride ions using Raman spectroscopy"

description: This data was generated for the publication of a research article with the same title and investigates the development of a fluoride sensor using ratiometric Raman spectroscopy. Raman data were acquired using a Renishaw inVia system with Renishaw Wire 4.4 software and are collated as excel file format .exe or text file format .txt, .wdf format as raw data and .spc for post processing in Wire 4.4 and subsequent Matlab analysis. Ratiometric Raman images were generated from Raman spectral maps using MATLAB. Data embargo until 01/01/2021