cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.pk056
title: Data from: Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology

description: The metabolic activities of gut microbes significantly influence host
 physiology; thus, characterizing the forces that modulate this
 micro-ecosystem is key to understanding mammalian biology and fitness. To
 investigate the gut microbiome of wild primates and determine how these
 microbial communities respond to the host's external environment, we
 characterized faecal bacterial communities and, for the first time, gut
 metabolomes of four wild lowland gorilla groups in the Dzanga-Sangha
 Protected Areas, Central African Republic. Results show that geographical
 range may be an important modulator of the gut microbiomes and metabolomes
 of these gorilla groups. Distinctions seemed to relate to feeding
 behaviour, implying energy harvest through increased fruit consumption or
 fermentation of highly fibrous foods. These observations were supported by
 differential abundance of metabolites and bacterial taxa associated with
 the metabolism of cellulose, phenolics, organic acids, simple sugars,
 lipids and sterols between gorillas occupying different geographical
 ranges. Additionally, the gut microbiomes of a gorilla group under
 increased anthropogenic pressure could always be distinguished from that
 of all other groups. By characterizing the interplay between environment,
 behaviour, diet and symbiotic gut microbes, we present an alternative
 perspective on primate ecology and on the forces that shape the gut
 microbiomes of wild primates from an evolutionary context.
description: READMEContains description of
 every file submitted for this data entry.Otu_Tableontains 16SrRNA raw abundances for each gorilla group clustered at 97% sequence similarityOtu_taxonomyContains taxonomic information and 16S rRNA sequence similarity % for every Otu in Otu_table.Genus_TableContains 16SrRNA raw abundances for each gorilla group at genus levelGenus_taxonomyContains taxonomic information and 16S rRNA sequence similarity % for every genus in Genus_table.Phyla_TableContains 16SrRNA raw abundances for each gorilla group at phyla levelPhyla_taxonomyContains taxonomic information and 16S rRNA sequence similarity % for every phylum in Phyla_table.SCFAMetabolomics_dataContains metabolite concentrations (GC-MS spectra expressed as analyte concentration relative to hentriacontanoic acid per gram Dry Weight (relative concentration), i.e., as target compound peak area divided by the internal standard (IS) peak area (IS concentration is the same in all samples)FeedingContains the number of observation days feeding on different food types consumed by all members of H1 and H2 (habituated gorilla groups) during 61 observation days. THV=Terrestrial herbaceous vegetation, FR=Fruit, LV=Leaves, INS=Insects (termites), BK=Bark.My454Perl script used to process raw 16S rRNA amplicons (primer trimming and removal of low quality sequences according to specified criteria, see detailed description in file)my454
DOI: 10.5061/dryad.v020j
title: Data from: Genetic structure, admixture, and invasion success in a Holarctic defoliator, the gypsy moth (Lymantria dispar, Lepidoptera: Erebidae)

description: Characterizing the current population structure of potentially invasive
 species provides a critical context for identifying source populations and
 for understanding why invasions are successful. Non-native populations
 inevitably lose genetic diversity during initial colonization events, but
 subsequent admixture among independently introduced lineages may increase
 both genetic variation and adaptive potential. Here we characterize the
 population structure of the gypsy moth (Lymantria dispar Linnaeus), one of
 the world's most destructive forest pests. Native to Eurasia and
 recently introduced to North America, the current distribution of gypsy
 moth includes forests throughout the temperate region of the northern
 hemisphere. Analyses of microsatellite loci and mitochondrial DNA
 sequences for 1738 individuals identified four genetic clusters within L.
 dispar. Three of these clusters correspond to the three named subspecies;
 North American populations represent a distinct fourth cluster, presumably
 a consequence of the population bottleneck and allele frequency change
 that accompanied introduction. We find no evidence that admixture has been
 an important catalyst of the successful invasion and range expansion in
 North America. However, we do find evidence of ongoing hybridization
 between subspecies and increased genetic variation in gypsy moth
 populations from Eastern Asia, populations that now pose a threat of
 further human-mediated introductions. Finally, we show that current
 patterns of variation can be explained in terms of climate and habitat
 changes during the Pleistocene, a time when temperate forests expanded and
 contracted. Deeply diverged matrilines in Europe imply that gypsy moths
 have been there for a long time and are not recent arrivals from Asia.
description: 1750 moth 9
 loci_Microsatellite data1750 moth 9 loci_Convert
 format.xlsxConcatenated mtDNA
 alignmentsFile is in MEGA
 formatmtDNA_concatenated.(time)Structure inputGeographic distance for Isolation by DistanceGeographic distance.txt
DOI: 10.5061/dryad.1jc02
title: Data from: Origin and genome evolution of polyploid green toads in Central Asia: evidence from microsatellite markers

description: Polyploidization, which is expected to trigger major genomic
 reorganizations, occurs much less commonly in animals than in plants,
 possibly because of constraints imposed by sex-determination systems. We
 investigated the origins and consequences of allopolyploidization in
 Palearctic green toads (Bufo viridis subgroup) from Central Asia, with
 three ploidy levels and different modes of genome transmission (sexual
 versus clonal), to (i) establish a topology for the reticulate phylogeny
 in a species-rich radiation involving several closely related lineages and
 (ii) explore processes of genomic reorganization that may follow
 polyploidization. Sibship analyses based on 30 cross-amplifying
 microsatellite markers substantiated the maternal origins and revealed the
 paternal origins and relationships of subgenomes in allopolyploids.
 Analyses of the synteny of linkage groups identified three markers
 affected by translocation events, which occurred only within the
 paternally inherited subgenomes of allopolyploid toads and exclusively
 affected the linkage group that determines sex in several diploid species
 of the green toad radiation. Recombination rates did not differ between
 diploid and polyploid toad species, and were overall much reduced in
 males, independent of linkage group and ploidy levels. Clonally
 transmitted subgenomes in allotriploid toads provided support for strong
 genetic drift, presumably resulting from recombination arrest. The
 Palearctic green toad radiation seems to offer unique opportunities to
 investigate the consequences of polyploidization and clonal transmission
 on the dynamics of genomes in vertebrates.
description: Origin and genome
 evolution of polyploid green toads in Central Asia_dataMatrix of
 Microsatellites data
DOI: 10.5061/dryad.0h584
title: Data from: "Transcriptome resources for two non-model freshwater crustacean species" in Genomic Resources Notes accepted 1 October 2014 to 30 November 2014

description: The aim of this study was to characterize the whole transcriptomes of two
 common Mediterranean freshwater crustaceans: the copepod Eucyclops
 serrulatus (Fischer, 1851) and the amphipod Echinogammarus veneris Heller,
 1865. Whole transcriptomic approaches may assist in studying the response
 to environmental pollution of species with little or no available genomic
 information, allowing the identification of genes involved in adaptation
 processes to polluted environments that can be studied in expression
 profile variation at a later stage. Further studies based on our results
 may allow for a more comprehensive overview of how freshwater crustaceans
 react to specific stressors, both from surface and groundwater habitats,
 where sub-lethal concentrations of individual stressors may become harmful
 when combined.
description: Eucyclops serrulatus,
 transcriptome shotgun assemblyEchinogammarus veneris,
 transcriptome shotgun assemblyFASTAQ file for
 Echinogammarus venerisFASTAQ file for
 Eucyclops serrulatusAppendixS1Blast results, GO annotations, GO annotation terms, associated microsatellites (including motif, primer and product size for each SSR) for each of the contigs and for both taxa
DOI: 10.5061/dryad.qk27t
title: Data from: The influence of mitonuclear genetic variation on personality in seed beetles

description: There is a growing awareness of the influence of mitochondrial genetic
 variation on life-history phenotypes, particularly via epistatic
 interactions with nuclear genes. Owing to their direct effect on traits
 such as metabolic and growth rates, mitonuclear interactions may also
 affect variation in behavioural types or personalities (i.e. behavioural
 variation that is consistent within individuals, but differs among
 individuals). However, this possibility is largely unexplored. We used
 mitonuclear introgression lines, where three mitochondrial genomes were
 introgressed into three nuclear genetic backgrounds, to disentangle
 genetic effects on behavioural variation in a seed beetle. We found
 within-individual consistency in a suite of activity-related behaviours,
 providing evidence for variation in personality. Composite measures of
 overall activity of individuals in behavioural assays were influenced by
 both nuclear genetic variation and by the interaction between nuclear and
 mitochondrial genomes. More importantly, the degree of expression of
 behavioural and life-history phenotypes was correlated and mitonuclear
 genetic variation affected expression of these concerted phenotypes. These
 results show that mitonuclear genetic variation affects both behavioural
 and life-history traits, and they provide novel insights into the
 maintenance of genetic variation in behaviour and personality.
description: Lovlie_et_al_mitonuclear_effects_on _seed_beetle_personality
DOI: 10.5061/dryad.1504g
title: Data from: Limited alpine climatic warming and modeled phenology advancement for three alpine species in the Northeast United States

description: Premise of the study: Most alpine plants in the Northeast United States
 are perennial and flower early in the growing season, extending their
 limited growing season. Concurrently, they risk the loss of reproductive
 efforts to late frosts. Quantifying long-term trends in northeastern
 alpine flower phenology and late-spring/early-summer frost risk is limited
 by a dearth of phenology and climate data, except for Mount Washington,
 New Hampshire (1916 m a.s.l.). Methods: Logistic phenology models for
 three northeastern US alpine species (Diapensia lapponica, Carex bigelowii
 and Vaccinium vitis-idaea) were developed from 4 yr (2008–2011) of
 phenology and air temperature measurements from 12 plots proximate to
 Mount Washington’s long-term summit meteorological station. Plot-level air
 temperature, the logistic phenology models, and Mount Washington’s climate
 data were used to hindcast model yearly (1935–2011) floral phenology and
 frost damage risk for the focal species. Key results: Day of year and air
 growing degree-days with threshold temperatures of −4°C (D. lapponica and
 C. bigelowii) and −2°C (V. vitis-idaea) best predicted flowering. Modeled
 historic flowering dates trended significantly earlier but the 77-yr
 change was small (1.2–2.1 d) and did not significantly increase
 early-flowering risk from late-spring/early-summer frost damage.
 Conclusions: Modeled trends in phenological advancement and sensitivity
 for three northeastern alpine species are less pronounced compared with
 lower elevations in the region, and this small shift in flower timing did
 not increase risk of frost damage. Potential reasons for limited earlier
 phenological advancement at higher elevations include a slower warming
 trend and increased cloud exposure with elevation and/or inadequate
 chilling requirements.
description: Phenology_data
DOI: 10.82294/dvnnpreyy
title: COPUS. Territorio: Cundinamarca. Sector: Educación. Año: 2024
title: Dato. Observación estructurada con el protocolo COPUS.

description: Información recopilada durante el año 2024 a partir de observaciones estructuradas realizadas con el protocolo COPUS, dirigidas a educadores artísticos pertenecientes a programas de formación en educación artística y cultural del sector Educación (educación formal) en el departamento de Cundinamarca.
DOI: 10.11588/duerer.online.6978d4125723b
title: Christus am Ölberg, https://d-nb.info/gnd/1201434246
DOI: 10.5061/dryad.20s7c
title: Data from: Phylogenomic resolution of the Hemichordate and Echinoderm clade

description: Ambulacraria, comprising Hemichordata and Echinodermata, is closely
 related to Chordata, making it integral to understanding chordate origins
 and polarizing chordate molecular and morphological characters.
 Unfortunately, relationships within Hemichordata and Echinodermata have
 remained unresolved, compromising our ability to extrapolate findings from
 the most closely related molecular and developmental models outside of
 Chordata (e.g., the acorn worms Saccoglossus kowalevskii and Ptychodera
 flava and the sea urchin Strongylocentrotus purpuratus). To resolve
 long-standing phylogenetic issues within Ambulacraria, we sequenced
 transcriptomes for 14 hemichordates as well as 8 echinoderms and
 complemented these with existing data for a total of 33 ambulacrarian
 operational taxonomic units (OTUs). Examination of leaf stability values
 revealed rhabdopleurid pterobranchs and the enteropneust Stereobalanus
 canadensis were unstable in placement; therefore, analyses were also run
 without these taxa. Analyses of 185 genes resulted in reciprocal monophyly
 of Enteropneusta and Pterobranchia, placed the deep-sea family
 Torquaratoridae within Ptychoderidae, and confirmed the position of
 ophiuroid brittle stars as sister to asteroid sea stars (the Asterozoa
 hypothesis). These results are consistent with earlier perspectives
 concerning plesiomorphies of Ambulacraria, including pharyngeal gill
 slits, a single axocoel, and paired hydrocoels and somatocoels. The
 resolved ambulacrarian phylogeny will help clarify the early evolution of
 chordate characteristics and has implications for our understanding of
 major fossil groups, including graptolites and somasteroideans.
description: 299/33
 datasetAligned fasta file of
 the 299/33 dataset299_33.fasta185/33 datasetAligned fasta file for 185/33 dataset185_33.fasta185/31 datasetAligned fasta file for 185/31 dataset185_31.fasta165/20 datasetAligned fasta file for 165/20 dataset165_20.fasta
DOI: 10.18742/30911753
title: Radical Translations: Geographical data (Places)

description: This dataset contains geodata about places (mostly cities) connected with the lives and activities of persons and organisations involved in the production of either source texts or their radical translations. These include places of birth and death, main residences, places of travel and exile, and places of publication of translations and source texts.This is an output of the AHRC-funded project <i>Radical Translations: The</i><i> </i><i>Transfer of Revolutionary Culture Between Britain, France and Italy (1789-1815)</i> (project reference AH/S007008/1) directed by Prof Sanja Perovic (PI), Rosa Mucignat (co-I) and Erica Mannucci (international co-I) and hosted by the Department of Languages, Literatures and Cultures, King's College London. For more information, visit https://radicaltranslations.org.
DOI: 10.18742/30911753.v1
title: Radical Translations: Geographical data (Places)

description: This dataset contains geodata about places (mostly cities) connected with the lives and activities of persons and organisations involved in the production of either source texts or their radical translations. These include places of birth and death, main residences, places of travel and exile, and places of publication of translations and source texts.This is an output of the AHRC-funded project <i>Radical Translations: The</i><i> </i><i>Transfer of Revolutionary Culture Between Britain, France and Italy (1789-1815)</i> (project reference AH/S007008/1) directed by Prof Sanja Perovic (PI), Rosa Mucignat (co-I) and Erica Mannucci (international co-I) and hosted by the Department of Languages, Literatures and Cultures, King's College London. For more information, visit https://radicaltranslations.org.
DOI: 10.18742/30911753.v2
title: Radical Translations: Geographical data (Places)

description: This dataset contains geodata about places (mostly cities) connected with the lives and activities of persons and organisations involved in the production of either source texts or their radical translations. These include places of birth and death, main residences, places of travel and exile, and places of publication of translations and source texts.This is an output of the AHRC-funded project <i>Radical Translations: The</i><i> </i><i>Transfer of Revolutionary Culture Between Britain, France and Italy (1789-1815)</i> (project reference AH/S007008/1) directed by Prof Sanja Perovic (PI), Rosa Mucignat (co-I) and Erica Mannucci (international co-I) and hosted by the Department of Languages, Literatures and Cultures, King's College London. For more information, visit https://radicaltranslations.org.
DOI: 10.5061/dryad.mb180
title: Data from: Geckos significantly alter foot orientation to facilitate adhesion during downhill locomotion

description: Geckos employ their adhesive system when moving up an incline, but the
 directionality of the system may limit function on downhill surfaces.
 Here, we use a generalist gecko to test whether limb modulation occurs on
 downhill slopes to allow geckos to take advantage of their adhesive
 system. We examined three-dimensional limb kinematics for geckos moving up
 and down a 45° slope. Remarkably, the hind limbs were rotated posteriorly
 on declines, resulting in digit III of the pes facing a more posterior
 direction (opposite to the direction of travel). No significant changes in
 limb orientation were found in any other condition. This pes rotation
 leads to a dramatic shift in foot function that facilitates the use of the
 adhesive system as a brake/stabilizer during downhill locomotion and,
 although this rotation is not unique to geckos, it is significant for the
 deployment of adhesion. Adhesion is not just advantageous for uphill
 locomotion but can be employed to help deal with the effects of gravity
 during downhill locomotion, highlighting the incredible
 multi-functionality of this key innovation.
description: FL_digitMCPAngleTrajectories_D045See ReadMe file at bottom for descriptions of all data files in this package.FL_digitMCPAngleTrajectories_L000FL_digitMCPAngleTrajectories_U045FL_endStanceDetailsFL_foreAftDigitPositionTrajectories_D045FL_foreAftDigitPositionTrajectories_L000FL_foreAftDigitPositionTrajectories_U045FL_medLatDigitPositionTrajectories_D045FL_medLatDigitPositionTrajectories_L000FL_medLatDigitPositionTrajectories_U045FL_verticalDigitPositionTrajectories_D045FL_verticalDigitPositionTrajectories_L000FL_verticalDigitPositionTrajectories_U045HL_digitMTPAngleTrajectories_D045HL_digitMTPAngleTrajectories_L000HL_digitMTPAngleTrajectories_U045HL_endStanceDetailsHL_FemurRotationHL_foreAftDigitPositionTrajectories_D045HL_foreAftDigitPositionTrajectories_L000HL_foreAftDigitPositionTrajectories_U045HL_medLatDigitPositionTrajectories_D045HL_medLatDigitPositionTrajectories_L000HL_medLatDigitPositionTrajectories_U045HL_verticalDigitPositionTrajectories_D045HL_verticalDigitPositionTrajectories_L000HL_verticalDigitPositionTrajectories_U045ReadMe for BirnJeffery & Higham
DOI: 10.5061/dryad.qg372
title: Data from: Do intraspecific or interspecific interactions determine responses to predators feeding on a shared size-structured prey community?

description: 1. Coexistence of predators that share the same prey is common. This is
 still the case in size structured predator communities where predators
 consume prey species of different sizes (interspecific prey responses) or
 consume different size classes of the same species of prey (intraspecific
 prey responses). 2. A mechanism has recently been proposed to explain
 coexistence between predators that differ in size but share the same prey
 species, emergent facilitation, which is dependent on strong intraspecific
 responses from one or more prey species. Under emergent facilitation
 predators can depend on each other for invasion, persistence or success in
 a size structured prey community. 3. Experimental evidence for
 intraspecific size-structured responses in prey populations remain rare
 and further questions remain about direct interactions between predators
 that could prevent or limit any positive effects between predators (e.g.
 intraguild predation). 4. Here we provide a community wide experiment on
 emergent facilitation including natural predators. We investigate both the
 direct interaction between two predators that differ in body size (fish
 vs. invertebrate predator) and the indirect interaction between them via
 their shared prey community (zooplankton). 5. Our evidence supports the
 most likely expectation of interactions between differently sized
 predators, that intraguild predation rates are high and interspecific
 interactions in the shared prey community dominate the response to
 predation (i.e. predator-mediated competition). The question of whether
 emergent facilitation occurs frequently in nature requires more empirical
 and theoretical attention, specifically to address the likelihood that its
 pre-conditions may co-occur with high rates of intraguild predation.
description: Data_HTB_Sept14_dryadA 3 page excel file containing abundance and body size data for the zooplankton prey, invertebrate predator and YOY perch from mesocosm experiments
DOI: 10.5281/zenodo.18390862
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Eduard Seler, http://www.wikidata.org/entity/Q68705. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q68705