cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3611489
title: PsPM-trSP4: SCR measurement in response to face photographs withangry, neutral, and fearful expression while subjected to auditory distractors

description: This dataset includes skin conductance response (SCR) measurements for each of 42 healthy unmedicated participants (21 males and 21 females aged 25.2 +/- 4.0 years) in response to 38 face photographs (modified from the Karolinska Directed Emotional Faces set, KDEF), each presented once with angry, neutral, and fearful expression for 1 s each. Meanwhile, participants were listening to regular or random distractor sounds, as described in Bach et al. (2015). ITI was selected randomly on each trial from 7.5 s, 9.0 s, or 10.5 s (misprinted in the publications), plus a variable delay of around 0.1 s for image loading. The experiment was preceded by a 2-minute resting period and divided into 3 blocks, separated by resting periods. Each resting period begins and ends with an event marker in the SCR recordings.
description: See the readme file for more detail. This work was supported by the Wellcome Trust [RJD, Senior Investigator Award 098362/Z/12/Z] and the Senate of Berlin [RJD, Einstein Fellowship]. The Wellcome Trust Centre for Neuroimaging is supported by core funding from the Wellcome Trust 091593/Z/10/Z.
DOI: 10.34740/kaggle/dsv/4488638
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.5281/zenodo.3836480
title: PsPM-HRM1-2: SCR and ECG measurements in response to white noise sounds and an auditory oddball task

description: This dataset includes skin conductance response (SCR) and electrocardiogram (ECG) for each of 61 healthy unmedicated participants (28 males, 32 females, 1 unassigned, aged 25.8 +/- 4.6 years) in response to 20 broadband white noise sounds (HRM1) or 10 oddball tones in a oddball task (HRM2). Some participants did not did not complete HRM1 or HRM2 or were excluded from analysis such that there are 56 recordings for HRM1 and 58 recordings for HRM2. White noise sounds in HRM1 were 1 s long with 10 ms on- and offset ramp and presented at ~85 dB. Oddball and standard sounds in HRM2 were 50 ms long, with 10 ms on- and offset ramp, and presented at ~75 dB. Sound frequency was 440 Hz or 460 Hz, randomly balanced per participant to oddballs and standards. SOA between white noise sounds and oddball tones was selected randomly on each trial from 30 s, 35 s or 40 s. All stimuli were presented in one block. There is a marker for each sound onset (including standard tones) in the windaq files.
description: This research was supported by Swiss National Science Foundation grant to DRB 320030_1449586/1 and the Wellcome Trust Centre for Neuroimaging grant 091593/Z/10/Z. All Matlab files are saved in MATLAB 9.7 (R2019b) format. (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm).
DOI: 10.5281/zenodo.3836479
title: PsPM-HRM1-2: SCR and ECG measurements in response to white noise sounds and an auditory oddball task

description: This dataset includes skin conductance response (SCR) and electrocardiogram (ECG) for each of 61 healthy unmedicated participants (28 males, 32 females, 1 unassigned, aged 25.8 +/- 4.6 years) in response to 20 broadband white noise sounds (HRM1) or 10 oddball tones in a oddball task (HRM2). Some participants did not did not complete HRM1 or HRM2 or were excluded from analysis such that there are 56 recordings for HRM1 and 58 recordings for HRM2. White noise sounds in HRM1 were 1 s long with 10 ms on- and offset ramp and presented at ~85 dB. Oddball and standard sounds in HRM2 were 50 ms long, with 10 ms on- and offset ramp, and presented at ~75 dB. Sound frequency was 440 Hz or 460 Hz, randomly balanced per participant to oddballs and standards. SOA between white noise sounds and oddball tones was selected randomly on each trial from 30 s, 35 s or 40 s. All stimuli were presented in one block. There is a marker for each sound onset (including standard tones) in the windaq files.
description: This research was supported by Swiss National Science Foundation grant to DRB 320030_1449586/1 and the Wellcome Trust Centre for Neuroimaging grant 091593/Z/10/Z. All Matlab files are saved in MATLAB 9.7 (R2019b) format. (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm).
DOI: 10.5281/zenodo.3860808
title: PsPM-HRM5: SCR, ECG and respiration measurements in response to positive/negative IAPS pictures, and neutral/aversive sounds

description: This dataset includes skin conductance response (SCR), electrocardiogram (ECG) and respiration measurements for each of 19 healthy unmedicated participants (8 males and 11 females aged 26.1 +/- 5.4 years) in response to 65 dB and 85 dB sounds as well as the 60 most arousing negative and the 60 most arousing positive (excluding explicit nude) IAPS pictures, presented for 1 s each. ITI was between 4-16 s.
description: This research was supported by Swiss National Science Foundation grant to DRB 320030_1449586/1 and the Wellcome Trust Centre for Neuroimaging grant 091593/Z/10/Z.
DOI: 10.5281/zenodo.3860807
title: PsPM-HRM5: SCR, ECG and respiration measurements in response to positive/negative IAPS pictures, and neutral/aversive sounds

description: This dataset includes skin conductance response (SCR), electrocardiogram (ECG) and respiration measurements for each of 19 healthy unmedicated participants (8 males and 11 females aged 26.1 +/- 5.4 years) in response to 65 dB and 85 dB sounds as well as the 60 most arousing negative and the 60 most arousing positive (excluding explicit nude) IAPS pictures, presented for 1 s each. ITI was between 4-16 s.
description: This research was supported by Swiss National Science Foundation grant to DRB 320030_1449586/1 and the Wellcome Trust Centre for Neuroimaging grant 091593/Z/10/Z.
DOI: 10.5281/zenodo.3865363
title: PsPM-SSNA_1-2: Sudomotor Nerve Activity and Skin Conductance Response to 1: Aversive Sounds and 2: Auditory Oddballs

description: This dataset includes skin conductance response (SCR) and sudomotor neurography signals for each of 7 healthy unmedicated participants 4 male, 3 female,23.7+/-4.0 years) in response to 20 broadband white noise sounds (SSNA_1) or 10 oddball tones in a oddball task (SSNA_2). Some participants did not complete SSNA_2 or had several repetitions of SSNA_1 such that there are 9 recordings for SSNA_1 and 5 recordings for SSNA_2. White noise sounds in SSNA_1 were 1 s long with 10 ms on- and offset ramp and presented at ~85 dB. Oddball and standard sounds in SSNA_2 were 50 ms long, with 10 ms on- and offset ramp, and presented at ~75 dB. Sound frequency was 440 Hz or 460 Hz. White noise sounds and oddball tones was separated by a random inter trial interval of at least 30 s. All stimuli for each of the experiments were presented in one block. There is a marker for each sound onset (including standard tones) in the spike recordings. Participants where instructed to press a button when hearing any sound (SSNA_1) or an oddball (SSNA_2). These keystrokes where not recorded.
description: See the readme file for more detail. This work was supported by: the Swiss National Science Foundation (grant 320030_149586) (to D. R. B.); the Swedish Research Council (grants 12170, 921-2014-7116) (to M. E.); Wellcome Trust funding (091593/Z/10/Z) (to Wellcome Trust Centre for Neuroimaging)
DOI: 10.5281/zenodo.3865364
title: PsPM-SSNA_1-2: Sudomotor Nerve Activity and Skin Conductance Response to 1: Aversive Sounds and 2: Auditory Oddballs

description: This dataset includes skin conductance response (SCR) and sudomotor neurography signals for each of 7 healthy unmedicated participants 4 male, 3 female,23.7+/-4.0 years) in response to 20 broadband white noise sounds (SSNA_1) or 10 oddball tones in a oddball task (SSNA_2). Some participants did not complete SSNA_2 or had several repetitions of SSNA_1 such that there are 9 recordings for SSNA_1 and 5 recordings for SSNA_2. White noise sounds in SSNA_1 were 1 s long with 10 ms on- and offset ramp and presented at ~85 dB. Oddball and standard sounds in SSNA_2 were 50 ms long, with 10 ms on- and offset ramp, and presented at ~75 dB. Sound frequency was 440 Hz or 460 Hz. White noise sounds and oddball tones was separated by a random inter trial interval of at least 30 s. All stimuli for each of the experiments were presented in one block. There is a marker for each sound onset (including standard tones) in the spike recordings. Participants where instructed to press a button when hearing any sound (SSNA_1) or an oddball (SSNA_2). These keystrokes where not recorded.
description: See the readme file for more detail. This work was supported by: the Swiss National Science Foundation (grant 320030_149586) (to D. R. B.); the Swedish Research Council (grants 12170, 921-2014-7116) (to M. E.); Wellcome Trust funding (091593/Z/10/Z) (to Wellcome Trust Centre for Neuroimaging)
DOI: 10.5281/zenodo.3980838
title: PsPM-VC1F: SCR, ECG, PPU, respiration and pupil measurements delay from a fear conditioning task with visual CS, performed during MRI scanning

description: This dataset includes skin conductance response (SCR), electrocardiogram (ECG), peripheral pulse unit (PPU), respiration, pupil size response (PSR) and eyetracker measurements for 21 healthy unmedicated participants (11 females and 10 males, age range: 19 - 34 years, mean age: 25.5 +/- 4.1) participating in a classical (Pavlovian) discriminant delay fear conditioning experiment with visual CS, during MRI scanning. Also included are CS and US information, and ratings of CS after the experiment. Simple and complex CS were tilted Gabor patches, and plaids consisting of two overlaid Gabor patches, respectively. US was a train of electric square pulses delivered with a constant current stimulator (Digitimer DS7A, Digitimer, Welwyn Garden City, UK) on participants' dominant forearm through a pin-cathode/ring-anode configuration. After the fear conditioning task, participants were asked to rate pairs of CS patches with respect to which of the two stimuli they liked less. Then they were asked to report their subjective estimate of how likely they were to receive a shock after this CS in the future, on a visual analogue scale of 0-100.
description: Data are stored as .mat files for use with MATLAB (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm). All Matlab files are saved in MATLAB 9.7 (R2019b) format.
DOI: 10.5281/zenodo.3980837
title: PsPM-VC1F: SCR, ECG, PPU, respiration and pupil measurements delay from a fear conditioning task with visual CS, performed during MRI scanning

description: This dataset includes skin conductance response (SCR), electrocardiogram (ECG), peripheral pulse unit (PPU), respiration, pupil size response (PSR) and eyetracker measurements for 21 healthy unmedicated participants (11 females and 10 males, age range: 19 - 34 years, mean age: 25.5 +/- 4.1) participating in a classical (Pavlovian) discriminant delay fear conditioning experiment with visual CS, during MRI scanning. Also included are CS and US information, and ratings of CS after the experiment. Simple and complex CS were tilted Gabor patches, and plaids consisting of two overlaid Gabor patches, respectively. US was a train of electric square pulses delivered with a constant current stimulator (Digitimer DS7A, Digitimer, Welwyn Garden City, UK) on participants' dominant forearm through a pin-cathode/ring-anode configuration. After the fear conditioning task, participants were asked to rate pairs of CS patches with respect to which of the two stimuli they liked less. Then they were asked to report their subjective estimate of how likely they were to receive a shock after this CS in the future, on a visual analogue scale of 0-100.
description: Data are stored as .mat files for use with MATLAB (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm). All Matlab files are saved in MATLAB 9.7 (R2019b) format.
DOI: 10.5281/zenodo.3891581
title: PsPM-SSNA_3: Skin conductance response to stimulation of the peripheral median nerve with electrical impulses

description: This dataset includes skin conductance response (SCR) for each of 4 healthy unmedicated participants (4 females, age range 24-49 years) in response to repeated stimulation of the peripheral median nerve with single impulses at successively increasing frequencies. Prior to the experiment, mepivacaine was delivered to induce axillary nerve blockade.
description: Supported by grants from the Swedish Medical Research Council (No. B 91-04X-03546-2OA and B 91-17X-08682-03A), from the Medical Faculty at the University of Göteborg, and from the Medical Society of Göteborg.
DOI: 10.5281/zenodo.3891582
title: PsPM-SSNA_3: Skin conductance response to stimulation of the peripheral median nerve with electrical impulses

description: This dataset includes skin conductance response (SCR) for each of 4 healthy unmedicated participants (4 females, age range 24-49 years) in response to repeated stimulation of the peripheral median nerve with single impulses at successively increasing frequencies. Prior to the experiment, mepivacaine was delivered to induce axillary nerve blockade.
description: Supported by grants from the Swedish Medical Research Council (No. B 91-04X-03546-2OA and B 91-17X-08682-03A), from the Medical Faculty at the University of Göteborg, and from the Medical Society of Göteborg.
DOI: 10.5517/ccdc.csd.cc2c7y9w
title: CCDC 2182378: Experimental Crystal Structure Determination

description: Related Article: Weiguang Yang|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.3835557
title: PsPM-LSOA: Pupil size response, SCR, EMG, ECG and respiration measurement from a classical (Pavlovian) discriminant delay fear conditioning task

description: This dataset includes eye tracker (including pupillometry), skin conductance, EMG, ECG and respiratory measurements. Also included are task information, keypress responses, keypress response times and key correctness for each of 22 healthy unmedicated participants (13 females and 9 males aged 25.3 +/- 4.3 years) participating in a classical (Pavlovian) discriminant delay fear conditioning task. CS consists of two sine tones with constant frequency (135 Hz or 300 Hz). Assignment of CS frequency to CS-/CS+ is randomised across participants. US is a train of electric square pulses delivered with a constant current stimulator (Digitimer DS7A, Digitimer, Welwyn Garden City, UK) on participants' dominant forearm through a pin-cathode/ring-anode configuration. SOA betwen the CS and US is 7.5 s. The ITI is randomly determined on each trial to be 10.0 +/- 1.4 s.
description: Data are stored as .mat files for use with MATLAB (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm). All Matlab files are saved in MATLAB 9.7 (R2019b) format.
DOI: 10.5281/zenodo.3835556
title: PsPM-LSOA: Pupil size response, SCR, EMG, ECG and respiration measurement from a classical (Pavlovian) discriminant delay fear conditioning task

description: This dataset includes eye tracker (including pupillometry), skin conductance, EMG, ECG and respiratory measurements. Also included are task information, keypress responses, keypress response times and key correctness for each of 22 healthy unmedicated participants (13 females and 9 males aged 25.3 +/- 4.3 years) participating in a classical (Pavlovian) discriminant delay fear conditioning task. CS consists of two sine tones with constant frequency (135 Hz or 300 Hz). Assignment of CS frequency to CS-/CS+ is randomised across participants. US is a train of electric square pulses delivered with a constant current stimulator (Digitimer DS7A, Digitimer, Welwyn Garden City, UK) on participants' dominant forearm through a pin-cathode/ring-anode configuration. SOA betwen the CS and US is 7.5 s. The ITI is randomly determined on each trial to be 10.0 +/- 1.4 s.
description: Data are stored as .mat files for use with MATLAB (The MathWorks Inc., Natick, USA) in a format readable by the PsPM toolbox (bachlab.org/pspm). All Matlab files are saved in MATLAB 9.7 (R2019b) format.
DOI: 10.5281/zenodo.6993124
title: Alanine dipeptide in an implicit solvent at 300K

description: This dataset has been introduced in the article Midgley, et al.: Flow Annealed Importance Sampling Bootstrap, 2022. It contains samples from the Boltzmann distribution of alanine dipeptide in an implicit solvent, which have been generated with a Replica Exchange Molecular Dynamics (REMD) simulation. The ff96 with an OBC GBSA implicit solvent was used. The REMD uses 21 replicas starting at a temperature of 300K and increasing the temperature by an increment of 50K. The replicas are exchanged every 200 iterations and use the state at each multiple of 1000 time steps as samples. Many of these simulations were in parallel with different seeds. We let the system equilibrate for \(2\times10^5\) iterations and run the simulation subsequently for \(2\times10^6\) iterations. The data is split into a training set, which consists of \(10^6\) samples; a validation set consisting of \(10^6\) samples as well; and a test set with \(10^7\) samples. The data is provided as raw \((x,y,z)\)-coordinates, stored as *.h5 files, and transformed to internal coordinates, stored as *.pt files. More details about the data and how to use it are given in our GitHub repository and paper.
DOI: 10.6084/m9.figshare.21542478.v1
title: Supplementary Material for: Case Report: Three Case Reports of Rapidly Progressive Dementias and Narrative Review

description: Rapidly progressive dementia (RPD) is a heterogeneous group of diseases characterized by cognitive impairment and other neurological disorders developed in a short span of fewer than 2 years. Currently viewed as new and infrequent entities, most medical personnel have little understanding of it. Nevertheless, they significantly compromise many patients’ quality of life. Here, we drive 3 clinical cases that evolve as RPD with different etiologies. <b><i>Case 1:</i></b>70-year-old woman presented to the emergency with neuropsychiatric syndrome for 18 days. The researchers identified inflammatory cerebrospinal fluid (CSF), protein 14-3-3-positive T-tau protein, MRI: T2 and FLAIR hyperintensities in bilateral caudate nuclei with diffusion restriction, EEG shows a generalized periodic pattern with triphasic wave morphology. <b><i>Case 2:</i></b>29-year-old man with cognitive impairment and faciobrachial dystonia seizure. The diagnosis was confirmed by achieving elevated antibodies against voltage-gated potassium channels. <b><i>Case 3:</i></b>A 49-year-old woman with encephalopathy and myoclonic seizures; EEG and MRI showed subtle changes. The patient also had a normal CSF but a positive CBA serologic NMDA-R antibody test. We described fundamental aspects of RPD to allow made differential diagnoses in patients with cognitive impairment and encephalopathy. Establishing an early and accurate diagnosis can benefit patients with RPD etiologies that are treatable and even reversible, decreasing in morbidity and mortality.
DOI: 10.6084/m9.figshare.21542472
title: Supplementary Data for quantifying future energy storage potential of EV batteries.xlsx

description: The dataset includes future EV fleets by country, EV sales share by cities, battery chemistry share, city ambient temperature, and battery degradation. These data are necessary for quantifying the future energy storage potential of EV batteries. The quantification methods can be found in the research article conducted by Xu et al.
DOI: 10.5281/zenodo.7300018
title: Fragment screening using biolayer interferometry reveals ligands targeting the SHP-motif binding site of the AAA+ ATPase p97

description: Biosensor techniques have become increasingly important for fragment-based drug discovery during the last years. The AAA+ ATPase p97 is an essential protein with key roles in protein homeostasis and a possible target for cancer chemotherapy. Currently available p97 inhibitors address its ATPase activity and globally impair p97-mediated processes. In contrast, inhibition of cofactor binding to the N-domain by a protein-protein-interaction inhibitor would enable the selective targeting of specific p97 functions. Here, we describe a biolayer interferometry-based fragment screen targeting the N-domain of p97 and demonstrate that a region known as SHP-motif binding site can be targeted with small molecules. Guided by molecular dynamics simulations, the binding sites of selected screening hits were postulated and experimentally validated using protein- and ligand-based NMR techniques, as well as X-ray crystallography, ultimately resulting in the first structure of a small molecule in complex with the N-domain of p97. The identified fragments provide insights into how this region could be targeted and present first chemical starting points for the development of a protein-protein interaction inhibitor preventing the binding of selected cofactors to p97. <br> Here we publish the primary data of the biolayer-interferometry (BLI), STD-NMR, HSQC-NMR and mixed-solvent MD simulation results.<br> For BLI, the sensorgrams of 10 binding fragments identified in the screening are given. Measurements were conducted with the N-domain and the ND1-construct of p97. Additionaly, the measurements with ADP as positive control (n=6) are provided.<br> Four of the 10 fragments were selected as most promising hits for further investigation: TROLL2, TROLL7, TROLL8 and TROLL12. For these fragemnts, the STD-NMR build-up data, the HSQC-NMR spectra and the representative poses from the mixed solvent MD simulations used for CORCEMA predictions are provided. For TROLL2 the anomalous map of the bromine atom of the crystal structure (PDB entry: 7PUX) is given.