cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.49k28j
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calotriton arnoldi Carranza & Amat, 2005"
 ]
}

 The dataset includes 196 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002035-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vv88a3
title: Occurrence Download

description: A dataset containing 319 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Horaninovia Fisch. & C.A.Mey."
 ]
}

 The dataset includes 319 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002032-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/0lhljy
title: Sugarcane apps

description: Fieldnote and screenshots of sugarcane apps.
DOI: 10.15468/dl.pqp7wk
title: Occurrence Download

description: A dataset containing 110111085 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 110111085 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002018-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/1rbfhi
title: Breaking Bad joke

description: Fieldnote about a Breaking Bad joke made in a biomass lab.
DOI: 10.17630/8f212aea-8ee4-4755-a0b5-15fcdf73d8e0
title: Customer orientation and stock resilience during adversity periods (dataset)

description: The data are provided in SAS format. The key variable is cust_mo in mo_data1 file, which is used for cross-sectional analysis. The other key variable is custom_orient5 in new_cust_measure file, which is estimated each fiscal year for each firm and used for panel data regression analysis. The embargo is applied as the data are currently used a part of an ongoing research project.
Datafiles are embargoed until the completion of the research project 31/12/2027
DOI: 10.7910/dvn/mces3n
title: Replication Data for: The Effects of Electoral Violence on Women’s Legislative Representation

description: Despite global expansion in women’s access to political leadership in recent decades, female parliamentarians remain a distinct minority in most national legislatures. Previous studies have linked women’s descriptive representation to international and domestic security threats, such as international war and transnational terrorist campaigns. However, existing research has overlooked how the turbulence, unrest, and violence often associated with the election process itself may produce gendered electoral outcomes. I argue that violent contention in the period immediately preceding elections introduces gendered distortions to the political recruitment process that determines the gender composition of legislatures. The cumulative effect of these distortions is a reduction in the proportion of legislative seats subsequently held by women. To evaluate my hypothesis, I analyze data from 620 nominally competitive legislative elections in 128 countries between 1990 and 2012. Consistent with expectations, the results suggest that higher levels of election-related violence are associated with lower rates of women's descriptive representation.
DOI: 10.5281/zenodo.15164208
title: Material suplementar do trabalho: "Entre o Corte e a Consequência: Evidências Temporais e Espaciais dos Impactos Climáticos do Desmatamento na Amazônia Legal".

description: Este repositorio faz publicos todos os algoritmos e códigos de análises utilizados no trabalho entitulado: "Entre o Corte e a Consequência: Evidências Temporais e Espaciais dos Impactos Climáticos do Desmatamento na Amazônia Legal".
DOI: 10.5281/zenodo.15283529
title: Multiple Sclerosis-Flair Dataset

description: This is a Multiple Sclerosis dataset of Flair -MRI(magnetic resonance imaging)  that contains 46 patient as trainig dataset and 4 patients as testing dataset . The dataset was gathered from King Abdullah University Hospital in jordan. Many prprocessing procedures were applied on data such as skull stripping, bias field correction  to be ready for using by machine and deep learning algorithms. every patient folder contains one file as flair scans and another one for labels.
DOI: 10.5281/zenodo.15283528
title: Multiple Sclerosis-Flair Dataset

description: This is a Multiple Sclerosis dataset of Flair -MRI(magnetic resonance imaging)  that contains 46 patient as trainig dataset and 4 patients as testing dataset . The dataset was gathered from King Abdullah University Hospital in jordan. Many prprocessing procedures were applied on data such as skull stripping, bias field correction  to be ready for using by machine and deep learning algorithms. every patient folder contains one file as flair scans and another one for labels.
DOI: 10.5281/zenodo.15283820
title: NAMLANGAN LYOSSIMON ZAMINLARNING SEYSMIK TURG'UNLIGINI BUZILISHI DISORDER OF SEISMIC STABILITY OF WATERED LOESS-LIKE SOILS

description: Ushbu maqola namlangan leyossimon zaminlarning seysmik turg‘unligining buzilishi jarayonlarini ko‘rib chiqamiz. Namlangan leyossimon zaminlar, odatda, daryo bo‘ylarida, botqoqliklarda yoki gumbazlarda uchraydi va o‘ziga xos geotexnik xususiyatlarga ega. Ular yuqori namlikka ega bo‘lib, seysmik ta'sirlar natijasida tuzilishini o‘zgartirishi mumkin. Maqolada bunday zaminlarning sismik ta'sirlarga qanday javob berishi, ularning barqarorligi va potentsial xavf-xatarlar tahlil qilingan. Seysmik ta'sirlar natijasida yuzaga keladigan zamin siljishlari, eroziya jarayonlari, hamda gruntning zichlanishi va puchayishi kabi jarayonlar batafsil o‘rganilgan. Ushbu tahlil, yer silkinishlari va seysmik faollik yuqori bo‘lgan hududlarda qurilish va inshootlarning barqarorligini ta'minlash uchun zarur geotexnik tadqiqotlarni o‘tkazishning muhimligini ta'kidlaymiz.
DOI: 10.5281/zenodo.15283821
title: NAMLANGAN LYOSSIMON ZAMINLARNING SEYSMIK TURG'UNLIGINI BUZILISHI DISORDER OF SEISMIC STABILITY OF WATERED LOESS-LIKE SOILS

description: Ushbu maqola namlangan leyossimon zaminlarning seysmik turg‘unligining buzilishi jarayonlarini ko‘rib chiqamiz. Namlangan leyossimon zaminlar, odatda, daryo bo‘ylarida, botqoqliklarda yoki gumbazlarda uchraydi va o‘ziga xos geotexnik xususiyatlarga ega. Ular yuqori namlikka ega bo‘lib, seysmik ta'sirlar natijasida tuzilishini o‘zgartirishi mumkin. Maqolada bunday zaminlarning sismik ta'sirlarga qanday javob berishi, ularning barqarorligi va potentsial xavf-xatarlar tahlil qilingan. Seysmik ta'sirlar natijasida yuzaga keladigan zamin siljishlari, eroziya jarayonlari, hamda gruntning zichlanishi va puchayishi kabi jarayonlar batafsil o‘rganilgan. Ushbu tahlil, yer silkinishlari va seysmik faollik yuqori bo‘lgan hududlarda qurilish va inshootlarning barqarorligini ta'minlash uchun zarur geotexnik tadqiqotlarni o‘tkazishning muhimligini ta'kidlaymiz.
DOI: 10.5281/zenodo.15283833
title: TRАNSLАTIОN PRОBLEMS ОF PHRАSEОLОGICАL UNITS INVОLVING NАMES ОF FRUITS АND VEGETАBLES IN ENGLISH АND UZBEK

description: This аrticle exаmines the prоblems thаt аrise in the prоcess оf trаnslаting phrаseоlоgicаl units cоntаining the nаmes оf fruits аnd vegetаbles in English аnd Uzbek. The linguistic аnd culturаl аspects оf phrаseоlоgicаl units, their impаct оn trаnslаtiоn, аs well аs difficulties in finding equivаlents in the trаnslаtiоn prоcess, аre аnаlyzed. The аrticle discusses effective trаnslаtiоn methоds thаt tаke culturаl differences intо аccоunt.
DOI: 10.5281/zenodo.15283834
title: TRАNSLАTIОN PRОBLEMS ОF PHRАSEОLОGICАL UNITS INVОLVING NАMES ОF FRUITS АND VEGETАBLES IN ENGLISH АND UZBEK

description: This аrticle exаmines the prоblems thаt аrise in the prоcess оf trаnslаting phrаseоlоgicаl units cоntаining the nаmes оf fruits аnd vegetаbles in English аnd Uzbek. The linguistic аnd culturаl аspects оf phrаseоlоgicаl units, their impаct оn trаnslаtiоn, аs well аs difficulties in finding equivаlents in the trаnslаtiоn prоcess, аre аnаlyzed. The аrticle discusses effective trаnslаtiоn methоds thаt tаke culturаl differences intо аccоunt.
DOI: 10.5281/zenodo.15283798
title: TABLE 1 in Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia

description: TABLE 1. Legs’ measurements of male of Pamirosa alaica sp. nov.
FePaTiMtTsTotalLeg I2.81.452.552.651.2510.7Leg II2.851.452.452.651.210.6Leg III2.91.352.252.951.2510.7Leg IV3.551.453.054.451.6514.15
description: Published as part of Fomichev, Alexander A. & Omelko, Mikhail M., 2025, Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia, pp. 252 in Zootaxa 5618 (2) on page 252, DOI: 10.11646/zootaxa.5618.2.4, http://zenodo.org/record/15217779
DOI: 10.5281/zenodo.15283802
title: TABLE 3 in Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia

description: TABLE 3. Legs’ measurements of female of Pamirosa alaica sp. nov.
FePaTiMtTsTotalLeg I2.851.52.352.11.19.9Leg II2.851.52.252.21.159.95Leg III2.81.452.12.551.210.1Leg IV3.551.552.954.11.613.75
description: Published as part of Fomichev, Alexander A. & Omelko, Mikhail M., 2025, Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia, pp. 253 in Zootaxa 5618 (2) on page 253, DOI: 10.11646/zootaxa.5618.2.4, http://zenodo.org/record/15217779
DOI: 10.5281/zenodo.15283800
title: TABLE 2 in Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia

description: TABLE 2. Legs’ spination of male of Pamirosa alaica sp. nov.
FePaTiMtLeg Id1-1-1 p0-0-1p1 r1p1-0-0 r1-0-1 v2-2-1-2p1-1-0 r1-1-0 v2-2-0Leg IId1-1-1 p1-0-1 r1-0-1p1 r1p1-0-0 r1-0-1 v2-2-1-2p1-1-0 r1-1-0 v2-2-0Leg IIId1-1-1 p1-0-1 r1-0-1p1 r1d1-0-1 p1-0-1 r1-0-1 v2-2-2d0-1-0 p1-1-0 r1-1-0 v2-2-0Leg IVd1-1-1 p1-0-1 r0-0-1p1 r1d1-0-1 p1-0-1 r1-0-1 v2-2-2d0-1-0 p1-1-0 r1-1-0 v3-0-2
description: Published as part of Fomichev, Alexander A. & Omelko, Mikhail M., 2025, Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia, pp. 252 in Zootaxa 5618 (2) on page 252, DOI: 10.11646/zootaxa.5618.2.4, http://zenodo.org/record/15217779
DOI: 10.5281/zenodo.15283804
title: TABLE 4 in Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia

description: TABLE 4. Legs’ spination of female of Pamirosa alaica sp. nov.
FePaTiMtLeg Id1-1-1 p0-0-1p1p1-0-0 r0-0-1 v2-2-1-2p1-1-0 r0-1-0Leg IId1-1-1 p0-1-10p1-0-1 r1-0-1 v2-2-2p1-1-0 r1-1-0 v2-2-0Leg IIId1-1-1 p1-0-1 r0-1-1p1 r1d1-1-0 p1-0-1 r1-0-1 v2-2-2d0-1-0 p1-1-0 r1-1-0 v2-2-0Leg IVd1-1-1 p1-0-1 r0-0-1p1 r1d1-0-1 p1-0-1 r1-0-1 v2-2-2d0-1-0 p1-1-0 r1-1-0 v3-0-2
description: Published as part of Fomichev, Alexander A. & Omelko, Mikhail M., 2025, Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia, pp. 253 in Zootaxa 5618 (2) on page 253, DOI: 10.11646/zootaxa.5618.2.4, http://zenodo.org/record/15217779
DOI: 10.5281/zenodo.15283806
title: TABLE 5 in Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia

description: TABLE 5. Legs’ measurements of male of Pamirosa archalturica sp. nov.
FePaTiMtTsTotalLeg I2.71.352.52.351.310.2Leg II2.551.352.452.51.2510.1Leg III2.551.22.12.61.259.7Leg IV3.251.352.93.951.613.05
description: Published as part of Fomichev, Alexander A. & Omelko, Mikhail M., 2025, Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia, pp. 253 in Zootaxa 5618 (2) on page 253, DOI: 10.11646/zootaxa.5618.2.4, http://zenodo.org/record/15217779
DOI: 10.5281/zenodo.15283808
title: TABLE 6 in Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia

description: TABLE 6. Legs’ spination of male of Pamirosa archalturica sp. nov.
FePaTiMtLeg Id1-1-1 p0-0-1p1 r1p1-0-0 r1-0-1 v2-2-1-2p1-1-0 r1-1-0 v2-2-0Leg IId1-1-1 p0-0-1 r0-1-1p1 r1p1-0-0 r1-0-1 v2-2-1-2p1-1-0 r1-1-0 v2-2-0Leg IIId1-1-1 p0-1-1 r0-0-1p1 r1d1-0-1 p1-0-1 r1-0-1 v2-2-2d0-1-0 p1-1-0 r1-1-0 v2-2-0Leg IVd1-1-1 p1-0-1 r0-0-1p1 r1d1-0-1 p1-0-1 r1-0-1 v2-2-2d0-1-0 p1-1-0 r1-1-0 v3-0-2
description: Published as part of Fomichev, Alexander A. & Omelko, Mikhail M., 2025, Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia, pp. 253 in Zootaxa 5618 (2) on page 253, DOI: 10.11646/zootaxa.5618.2.4, http://zenodo.org/record/15217779
DOI: 10.5281/zenodo.15283812
title: TABLE 8 in Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia

description: TABLE 8. Legs’ spination of male of Pamirosa transalaica sp. nov.
FePaTiMtLeg Id1-1-1 p0-0-1p1 r1p1-0-0 r1-0-1 v2-2-1-2p1-1-0 r1-1-0 v2-2-0Leg IId1-1-1 p1-0-1 r1-0-1p1 r1p1-0-0 r1-0-1 v2-2-1-2p1-1-0 r1-1-0 v2-2-0Leg IIId1-1-1 p1-0-1 r1-0-1p1 r1d1-0-1 p1-0-1 r1-0-1 v2-2-2d0-1-0 p1-1-0 r1-1-0 v2-2-0Leg IVd1-1-1 p1-0-1 r0-0-1p1 r1d1-0-1 p1-0-1 r1-0-1 v2-2-2d0-1-0 p1-1-0 r1-1-0 v3-0-2
description: Published as part of Fomichev, Alexander A. & Omelko, Mikhail M., 2025, Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia, pp. 256 in Zootaxa 5618 (2) on page 256, DOI: 10.11646/zootaxa.5618.2.4, http://zenodo.org/record/15217779
DOI: 10.5281/zenodo.15283810
title: TABLE 7 in Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia

description: TABLE 7. Legs’ measurements of male of Pamirosa transalaica sp. nov.
FePaTiMtTsTotalLeg I3.21.62.952.81.4512.0Leg II3.151.62.852.91.4511.95Leg III3.151.452.553.31.511.95Leg IV3.81.63.354.751.915.4
description: Published as part of Fomichev, Alexander A. & Omelko, Mikhail M., 2025, Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia, pp. 254 in Zootaxa 5618 (2) on page 254, DOI: 10.11646/zootaxa.5618.2.4, http://zenodo.org/record/15217779
DOI: 10.5281/zenodo.15283814
title: TABLE 9 in Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia

description: TABLE 9. Legs’ measurements of female of Pamirosa transalaica sp. nov.
FePaTiMtTsTotalLeg I3.21.72.752.51.3511.5Leg II3.11.652.652.551.3511.3Leg III3.251.552.553.151.4511.95Leg IV4.01.753.454.71.8515.75
description: Published as part of Fomichev, Alexander A. & Omelko, Mikhail M., 2025, Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia, pp. 256 in Zootaxa 5618 (2) on page 256, DOI: 10.11646/zootaxa.5618.2.4, http://zenodo.org/record/15217779
DOI: 10.5281/zenodo.15283816
title: TABLE 10 in Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia

description: TABLE 10. Legs’ spination of female of Pamirosa transalaica sp. nov.
FePaTiMtLeg Id1-1-1 p0-0-10p1-0-0 r1-0-1 v2-2-1-2p1-1-0 r1-1-0 v2-2-0Leg IId1-1-1 p1-0-1 r0-1-0p1p1-0-1 r1-0-1 v2-2-2p1-1-0 r1-1-0 v2-2-0Leg IIId1-1-1 p1-0-1 r1-0-1p1 r1d1-1-0 p1-0-1 r2-0-1 v2-2-2d0-1-0 p1-1-0 r1-1-0 v2-2-0Leg IVd1-1-1 p1-0-1 r0-0-1p1 r1d1-0-1 p1-0-1 r1-0-1 v2-2-2d0-1-0 p1-1-0 r1-1-0 v3-0-2
description: Published as part of Fomichev, Alexander A. & Omelko, Mikhail M., 2025, Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia, pp. 256 in Zootaxa 5618 (2) on page 256, DOI: 10.11646/zootaxa.5618.2.4, http://zenodo.org/record/15217779
DOI: 10.5281/zenodo.15283818
title: TABLE 11 in Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia

description: TABLE 11. Distinguishing features of Pamirosa species.
CharacterP. alaica sp. nov.P. archalturica sp. nov.P. kudratbekoviP. transalaica sp. nov.MalesTip of cymbiumModified, bent dorsallyUnmodifiedModified, bent dorsallyUnmodifiedConductor (Cn) in ventral viewTriangularSquareTriangularOvalTegular apophysis (TA) in ventral viewГ-shaped, extends 1/4 beyond conductorГ-shaped. extends 1/2 beyond conductorIrregular-shaped, extends 1/3 beyond conductorГ-shaped, extends 1/4 beyond conductorProlateral process of tegular apophysis (PP)Ventrally-directed, spine-like in prolateral viewVentrally-directed, digitiform in prolateral viewProlateral-directed, triangular in prolateral viewProlateral-directed, almost rectangular in prolateral viewSecondary prolateral process of tegular apophysis (SP)Poorly developedWell developedPoorly developedPoorly developedRetrolateral process of tegular apophysis (RP)SemicircularHook-shapedSemicircularSemicircularProximal part of embolus (PE) in ventral viewAlmost circular, smoothly roundedSemicircular, steeply curvedAlmost circular, smoothly roundedAlmost circular, with slightly indented retroposterior marginBasoembolic apophysis (BA)With more developed posterior lobeWith anterior and posterior lobes equal in sizeWith more developed posterior lobeWith more developed posterior lobeTip of terminal apophysis (Tr)Clow-likeBluntClow-likeClow-likeDorsal process of embolic division (DP) in dorsal viewTrapezoidalElongated triangle-shapedIsosceles triangle-shapedTrapezoidalDistal part of embolus (DE)Without process, coiledWith cone-shaped process and shortened and hooked tipWithout process, coiledWithout process, coiledFemalesFoveaTriangular–TrapezoidalTrapezoidalCopulatory ducts (CD)Touching each other, form approximately 2 turns around fertilization ducts–Not touching each other, form approximately 3 turns around fertilization ductsNot touching each other, form approximately 2 turns around fertilization ductsPosterior part of receptacles (Re)Screw-shaped–Screw-shapedCircularHeads of receptacles (RH)Rode-shaped, parallel–Elliptical, convergingKidney-shaped, converging
description: Published as part of Fomichev, Alexander A. & Omelko, Mikhail M., 2025, Three new species of Pamirosa Fomichev, Omelko & Marusik, 2024 (Araneae: Lycosidae) from Kyrgyzstan, extending the known range of Artoriinae in Central Asia, pp. 260 in Zootaxa 5618 (2) on page 260, DOI: 10.11646/zootaxa.5618.2.4, http://zenodo.org/record/15217779
DOI: 10.7910/dvn/1xndgs
title: Synthetic sugars

description: Fieldnote and photograph of synthetic sugars in a lab experiment.
DOI: 10.3886/e244847v1
title: Scaffold Stiffening within the Pathophysiological Range Disrupts Tight Junctions and Promotes Fibrosis in Renal Epithelial Cells via p38 MAPK

description: This project contains the datasets supporting the findings of the study “Scaffold Stiffening within the Pathophysiological Range Disrupts Tight Junctions and Promotes Fibrosis in Renal Epithelial Cells via p38 MAPK”.
DOI: 10.15129/f29b3576-ae0a-43dc-a837-ea1db7d48a12
title: Data for: “Information seeking behaviour of UK retail banking customers towards online purchase adoption: an integrated UTAUT2 model”

description: This dataset is associated with a PhD thesis titled “Information seeking behaviour of UK retail banking customers towards online purchase adoption: an integrated UTAUT2 model.” It comprises the thesis abstract, participant demographic information, research instrument, and the data collected from study participants. No personally identifiable information is included in the dataset.
DOI: 10.5281/zenodo.18456621
title: Codes and key processed files for Xie et al. manuscript

description: Codes and scripts used in Xie et al. manuscript

 

IMPORTANT NOTE: the biomarkers and algorithms in this repo are protected by multiple patents. The codes could only be used for academic evaluations, distributed under the [CC BY-NC-ND 4.0](https://creativecommons.org/licenses/by-nc-nd/4.0/ "CC BY-NC-ND") license. Please contact Dr. Kun Sun (sunkun@szbl.ac.cn) for enquiries about commercial usages.

 

Our programs/codes were developed on a CentOS v7.5 (64-bit, kernal version v3.10.0) machine with the following software and packages:

- Ktrim v1.6.0;

- Bowtie2 v2.3.5.1;

- Bedtools v2.29.2;

- R v4.1.2, requires "ggplot2", "ggpubr", "ggprism", "reshape2", "forcats", "ggbeeswarm", "dplyr", "cowplot", "tidyverse", "verification", "gbm", "caret", "foreach", "doParallel", "binom", and "pROC" packages.

 

CfDNA data processing

For raw cfDNA read processing, including preprocessing, alignment, and duplicate removal, please refer to Liu et al. STAR Protocols 2025 (https://www.sciencedirect.com/science/article/pii/S2666166725001637) and this https://github.com/hellosunking/STAR-Protocol-cfDNA-end-selection.

 

CfDNA feature extractions

1. For size, end selection and motif features, please refer to Ju et al. Cell Reports Methods 2024 (https://www.sciencedirect.com/science/article/pii/S2667237524002601), Liu et al. STAR Protocols 2025 (https://www.sciencedirect.com/science/article/pii/S2666166725001637), and this https://github.com/hellosunking/STAR-Protocol-cfDNA-end-selection.

2. For E-index, please refer to An et al. Nature Communications 2023 (https://www.nature.com/articles/s41467-023-35959-6) and https://github.com/hellosunking/STAR-Protocol-cfDNA-end-selection.

3. Programs for copy number analysis, including extracting mean and s.d. values from the reference panel, calculating read counts per bin and converting to Z-scores, are provided in `Copy.number` directory. We first analyzed the referece panel to calculcate mean and sd values for each 5Mb genomic bin using `1.calc.mean.sd.in.reference/process.reference.sh`, and generated `1.calc.mean.sd.in.reference/Prostate.reference.bin5M.mean.sd` file; then we calculated the Z-scores for each sample per bin using `2.calc.z.score/calc.Zscore.sh`.

4. Programs for analyzing AR-specific binding regions, including region definition and extracting cfDNA signals, are provided in `AR-specific.binding.regions` directory. You need to prepare a `bed.list` file and then run `2.profile.cfDNA/profile.cfDNA.sh` to get the features.

5. Programs for calculating RSD (relative sequencing depth) values for TEs are provided in `RSD` directory. You need to prepare a `bed.list` file and then run `calc.RSD.sh` to get the features.

 

Building PROTECTOR and PROTECTOR+ models

Programs and feature matrices for building PROTECTOR and PROTECTOR+ models are provided in `PROTECTOR.model` directory. Run `build.PROTECTOR.models.sh` to build the models and plot ROC curves.