cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8188431
title: DSM: Deep Sequential Model for Complete Neuronal Morphology Representation and Feature Extraction

description: This is an open-source repository for hosting codes and data files from research, "DSM: Deep Sequential Model for Complete Neuronal Morphology Representation and Feature Extraction". We also provided a web service based on our methods, please go to http://101.43.104.173:8501/.
(1)raw_dataset.zip: 

1,282 neuron reconstructions from SEU-Allen dataset;
1,002 neuron reconstructions from Janelia dataset;
1,100 neuron reconstructions from ION dataset.
(2)Supplementary.zip: Supplementary information, including tables and figures;
(3)DSM-tools.zip: A python package for converting neuron morphology into sequences and implementing DSM models.

NeuronSequenceDataset class: to transform SWC files to sequence dataframes by binary tree traversals, and prepare for the input of DSM networks.
DSMDataConverter class: a helper to convert the sequence dataframes for classification and clustering.
DSMHierarchicalAttentionNetwork class: classification model, giving a pre-trained DSM-HAN model by default.
DSMAutoencoder class: clustering model, giving a pre-trained DSM-AE model by default.
(4)neuron2seq_for_developer.zip: A repository for further development of the models, including source codes and all data files.
DOI: 10.34740/kaggle/dsv/7166698
title: Egypt Gold Prices | Daily Updated
DOI: 10.5281/zenodo.10102195
title: Supplementary File_Nirmatrelvir_Risk of Bias Excel Tool (Version 2)

description: Supplementary material (Risk of Bias Excel Tool (Version 2)) for the 1st update of the Cochrane Review "Nirmatrelvir combined with ritonavir for preventing and treating COVID-19".
DOI: 10.6084/m9.figshare.1108081
title: DARIUS Database

description: This database was established during my PhD dissertation project (2011-2014 ; University Paris 1 Panthéon-Sorbonne, UMR Géographie-Cités, ERC GeoDiverCity) It gives (mainly) demographic informations on morphological agglomerations in the Former Soviet Union space from 1840 to 2010
DOI: 10.25550/2t-8jmg
title: Hedgehog signalling from the developing tooth directs the development of the adjacent vestibular lamina, coordinating tooth and vestibule formation

description: This Bulk RNA-seq transcriptomic datasets created from dissected oral tissue from E14 mouse embryonic lower jaws, comparing the forming vestibular lamina (structure that creates the oral vestibule) and the adjacent incisor tooth germ, which forms from the dental lamina. No previous transcriptomic data is available that specifically focuses on the vestibular lamina. This wildtype murine dataset therefore fills in a gap in existing knowledge and provides a wealth of molecular knowledge about this structure. The comparison to the adjacent incisor tooth allows for an understanding of the molecular signatures that define the vestibular and dental laminas and will be of interest to those working in the dental field.
DOI: 10.3886/icpsr01242.v1
title: Forecasting Inflation and Growth: Do Private Forecasts Match Those of Policymakers?
title: Version 1

description: Federal Open Market Committee (FOMC) projections are important because they provide information for evaluating current monetary policy intentions and because they indicate what FOMC members think will be the likely consequence of their policies. Knowing the Fed's objectives, their forecasts, and recent deviations of the economy from the forecasts should be sufficient to understand how the Fed is making monetary policy. Results here show that the Blue Chip consensus forecasts are a good proxy for the FOMC views. For example, they match the policymakers' views as closely as do the Board staff forecasts presented at FOMC meetings. Using alternative forms of the Taylor rule, the authors show that the Blue Chip consensus and the Fed policymakers' forecasts have almost identical implications for the monetary policy process.
description: Datasets: 
 
 DS1: Dataset
description: (1) There were two files submitted, 0105wgp.prg, containing programs, and 0105wgd.xls, containing data. (2) These data are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the investigators if further information is desired.
DOI: 10.5281/zenodo.4457648
title: Panoramic radiography database

description: This database contains 598 panoramic radiographs, whose dimensions are 2041 x 1024 and are in a JPEG format. <br> These images were acquired with Owandy I-max Touch panoramic radiography equipment belonging to the <em>Departamento de Radiología de la Facultad de Odontología, Universidad Nacional de Asunción, </em>located in Asuncion, Paraguay<em>.</em> <em>If you use the dataset, please cite the paper:</em> Román, J.C.M.; Fretes, V.R.; Adorno, C.G.; Silva, R.G.; Noguera, J.L.V.; Legal-Ayala, H.; Mello-Román, J.D.; Torres, R.D.E.; Facon, J. <strong>Panoramic Dental Radiography Image Enhancement Using Multiscale Mathematical Morphology</strong>. <em>Sensors</em> <strong>2021</strong>, <em>21</em>, 3110. https://doi.org/10.3390/s21093110
DOI: 10.5281/zenodo.4585449
title: VibML

description: The deposited data sets were used to obtain representations<br> of potential energy surfaces (PESs) for eight representative<br> molecules using a neural network of the PhysNet type [1]. The<br> molecules under investigation are H2CO, trans-HONO, HCOOH,<br> CH3OH, CH3CHO, CH3NO2, CH3COOH and CH3CONH2. Reference data calculated at three different levels of quantum<br> chemical theory (MP2/aug-cc-pVTZ, CCSD(T)/aug-cc-pVTZ and<br> CCSD(T)-F12/aug-cc-pVTZ-F12) was used to train machine learning<br> (ML) models. Data sets at the MP2 level of theory were generated<br> for all molecules, at CCSD(T) level they were generated for<br> molecules with less than 7 atoms, and data sets at the CCSD(T)-F12<br> level of theory were generated for molecules with less than 6<br> atoms. The data sets contain different geometries for each<br> molecule generated using the normal mode sampling approach [2]<br> performed at different temperatures. The ab initio calculations<br> were performed using MOLPRO [3]. The performance of the PhysNet is then examined by considering<br> out-of-sample energy and force errors, harmonic frequencies in<br> comparison to explicit ab initio calculations and anharmonic<br> frequencies (obtained from a second order vibrational perturbation<br> theory (VPT2) analysis [4] as implemented in the Gaussian 09<br> suite [5]) in comparison to ab initio VPT2 calculations at the<br> MP2 level as well as to experiment. <br> For more details, see https://arxiv.org/abs/2103.05491 ---------------------------------------------------------------------------------------<br> HOW TO CITE: When using this dataset, please cite the following paper:<br> Käser, S. and Boittier, E. and Upadhyay, M. and Meuwly, M.<br> "MP2 Is Not Good Enough! Transfer Learning ML Models for<br> Accurate VPT2 Frequencies", arXiv:2103.05491. and the digital object identifier (DOI):<br> Käser, S. and Boittier, E. and Upadhyay, M. and Meuwly, M. (2021).<br> VibML. Zenodo. http://doi.org/10.5281/zenodo.4585449 --------------------------------------------------------------------------------------- [1] Unke, O. T.; Meuwly, M. J. Chem. Theory Comput. 2019, 15, 3678–3693<br> [2] Smith, J. S.; Isayev, O.; Roitberg, A. E. Sci. Data 2017, 4, 170193<br> [3] Werner, H.-J.; Knowles, P. J.; Knizia, G.; Manby, F. R.; Schütz, M.; et al. https://www.molpro.net<br> [4] Barone, V.; J. Chem. Phys. 2005, 122, 014108<br> [5] Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.;<br> Scalmani, G.; Barone, V.; Mennucci, B.; Petersson, G. A. et al. Gaussian09 Revision E.01. Gaussian Inc.<br> Wallingford CT 2009
DOI: 10.5281/zenodo.7085454
title: Water vapor vertical distribution on Mars during perihelion season of MY 34 and MY 35 with ExoMars-TGO/NOMAD observations [Dataset]

description: 1. Description of methods used for collection/generation of data:<br> NOMAD SO channel acquires transmittance spectra at different diffraction orders sounding the limb of the Martian atmosphere in solar occultation. It uses an echelle grating with a density of ∼4 lines/mm in a litrow configuration. An Acousto-Optical Tunable Filter (AOTF) is used to select different spectral windows (with a width that varies from 20 to 35 cm−1). Each window corresponds to the desired diffraction order to be used during the atmospheric scan. The spectral resolution of the SO channel is λ/∆λ=20,000.<br> After spectral calibration, the inversion problem is solved by fitting the data with a forward model and the vertical profiles are obtained. 2. Methods for processing the data:<br> For the H2O inversion we use the Retrieval Control Program (RCP) developed at Institut für Meteoriologie und Klimaforschung (IMK), which incorporates the Karlsruhe Optimized and Precise Radiative transfer Algorithm (KOPRA) forward model. After providing an a priori, a first-guess and the measured spectra, RCP solves the inversion problem iteratively until the convergence of the solution. The IMK-IAA level-2 processor relies on multi-parameter non-linear least squares fitting of measured and modeled spectra (von Clarmann et al., 2003). Further information about RCP and the inversion problem can be found in (Jurado Navarro et al., 2016).<br> Retrievals of NOMAD diffraction orders 134 (3011-3035 cm−1) and 168 (3775-3805 cm−1) have been obtained and merged when collocated.
DOI: 10.5281/zenodo.7579707
title: Simulations and Code in Support of PUMASv1 Revised Paper (GMDD)

description: Data and Code in Support of Geoscientific Model Development Publication. Revised version. Importance of Ice Nucleation and Precipitation on Climate with the Parameterization of Unified Microphysics Across Scales version 1 (PUMASv1) https://egusphere.copernicus.org/preprints/2022/egusphere-2022-980/ https://doi.org/10.5194/egusphere-2022-980 mg3_cam6357* files are from Single Column Model experiments cc* files are full 3D fields of single variables. Description of extra files: Code modifications from https://github.com/ESCOMP/CAM/tree/cam6_3_057 hetfrz_classnuc.F90, hetfrz_classnuc_cam.F90, micro_pumas_cam.F90, micro_pumas_v1.F90 Analysis code used in the Paper: rscam_mg3_profile3pumas.py rscam_multi_pumasTs22v4.ipynb sens_avg_plot4small.ipynb sens_avg_plot_PI4small.ipynb
DOI: 10.17909/t95q4x
title: Catalogs of Cosmologically Useful Type Ia Supernovae from Pan-STARRS  ("PS1COSMO")

description: The Pan-STARRS Supernova (PS1 SN) Cosmology data release contains light curves, host galaxy spectra, light curve parameters, distance measurements, and cosmology fitter input files that can be used to measure the dark energy equation of state using two PS1 SN datasets. The first dataset (Scolnic et al. 2018) is the Pantheon sample, which combines spectroscopically classified PS1 SNe Ia with Sloan Digital Sky Survey, SuperNova Legacy Survey, and Low-z SNe Ia. These SNe were used to measure the dark energy equation of state in Scolnic et al. (2018), who find a value of -1.026 +/- 0.041. The second dataset (Jones et al. 2018) includes 1,174 Pan-STARRS SNe without spectroscopic classifications. Approximately 95% of these data SNe are of Type Ia, with the remainder being Core-Collapse (CC) SNe. Jones et al. (2018) use a Bayesian methodology to marginalize over CC SNe in these data and, after combining the sample with low-z SNe Ia, measure the dark energy equation of state to be -0.989 +/- 0.057.
DOI: 10.34740/kaggle/dsv/7166810
title: OnlineFree
DOI: 10.34740/kaggle/dsv/7166809
title: AutoXGB
DOI: 10.15151/esrf-es-1324919545
title: Italian CryoEM Bag (ICB)

description: This BAG application builds on the development of single particle cryo-EM in the Italian Structural Biology community, as in Italy there is no top-end instrument available. The groups in this application have acquired know-how in cryo.EM through international collaborations or by acquiring medium-level in-house equipment. Access to the CM01 beamline at the ESRF has been instrumental for the achievement of high-profile scientific results and publications in top journals. Presently three screening microscopes are available in Italy, these instruments will boost sample production and the number of applications to CM01. Given these premises a BAG from Italian institutions could ensure timely data collection, nurturing the expansion of the field in Italy and a high-level scientific production.
DOI: 10.48577/jpl.p0s4hb
title: Developing a detection and monitoring framework for wildfire regimes with L-Band Polarimetric SAR

description: No abstract available.
DOI: 10.48577/jpl.mbnofc
title: Learning and Autonomy for Space Exploration: An Experience Report from OWLAT Deployment

description: Extraterrestrial autonomous lander missions are increasingly demanding adaptive capabilities to handle the unpredictable and diverse nature of the terrain. This paper discusses the deployment of a Deep Meta-Learning with Controlled Deployment Gaps (CoDeGa) trained model for terrain scooping tasks in Ocean Worlds Lander Autonomy Testbed (OWLAT) at NASA Jet Propulsion Laboratory. The CoDeGa-powered scooping strategy is designed to adapt to novel terrains, selecting scooping actions based on the available RGB-D image data and limited experience. The paper presents our experiences with transferring the CoDeGa model trained on a low-fidelity UIUC testbed to the high-fidelity OWLAT evaluating the feasibility of transferring the model to similar systems, validating the model’s performance in novel, realistic environments, and sharing the lessons learned from deploying learning-based autonomy algorithms for space exploration. Preliminary findings substantiate the efficacy of CoDeGA in adapting to unfamiliar terrains, effectively making autonomous decisions under considerable domain shifts, thereby endorsing its potential utility in future extraterrestrial missions.
DOI: 10.48577/jpl.fka9d4
title: Methods for Determining Initial Feasibility: Identifying the Accessible Trade Space

description: The purpose of the NASA Pre-Phase A project life cycle phase is, “To produce a broad spectrum of ideas and alternatives for missions from which new programs/projects can be selected, and to determine the feasibility of [the] desired system, develop mission concepts, draft system-level requirements, assess performance, cost, and schedule feasibility; identify potential technology needs, and scope.” There are, however, limited resources (time, money, workforce) with which to conduct this trade space exploration. The question therefore is how to conduct this trade space exploration most efficiently, and how to produce a broad spectrum of ideas and alternatives for missions from which new programs/projects can be selected. Trade space exploration efficiency is defined as the number of selectable concepts explored multiplied by the work spent to explore them, divided by the sum of the number of selectable concepts explored multiplied by the work spent to explore them and the number of non-selectable concepts explored multiplied by the work spent to explore the non-selectable concepts. Increases in efficiency then dictate that both the number of nonselectable concepts explored, and the work spent exploring them, be minimized. Top down, fundamental physics based, analogy based, and parametric based techniques require less work to explore concepts than traditional “grass-roots”, “bottoms-up”, first principles estimation techniques, increasing trade space exploration efficiency. Top down, fundamental physics based, analogy based, and parametric based techniques can also be used to create relationships between key performance, technical, and cost parameters. These relationships can then be used with the cost cap, performance floor, and technical wall boundary conditions to identify the accessible trade space. This alone can drastically reduce the number of non-selectable concepts explored, dramatically increasing trade space exploration efficiency. The approaches to derive and use the top down, fundamental physics based, analogy based, and parametric based relationships for identifying the accessible trade space has been pioneered in initial feasibility studies of space mission concepts in the A-Team at the Jet Propulsion Laboratory.
DOI: 10.48577/jpl.s0w63k
title: Development of a hybrid particle-continuum solver for studying plume expansion into rarefied flows

description: The direct simulation Monte Carlo (DSMC) method and unsteady Navier-Stokes (NS) are combined in a hybrid formulation with an ultimate aim to model positioning-rocket laminar jet expansion in the lunar atmosphere. The hybrid solver uses the Schwarz technique, a classical matching procedure of the length scales and time scales between the continuum and rarefied environments. The novelty of the current work is its ability to be applied to unsteady problems and to accommodate a large variation in Knudsen number values, Kn. The length scale coupling from the continuum to the DSMC region is determined by a criterion based on the local gradient-length of Kn, which according to the specified criterion is larger than the continuum breakdown parameter set at the value of 0.05 at the transition from continuum to rarefied conditions for a jet. To this end, one-dimensional steady shock configurations with upstream Mach numbers varying between 1.7 to 8.4 are studied. Perfect agreement is achieved with measurements, indicating that spatial coupling between the rarefied and continuum regions is performed precisely. To ensure time accuracy in the coupling, the number of DSMC time steps is determined by the ratio of the continuum (i.e., NS) time step to the DSMC time step, which is governed by the mean collision time of particles. A relatively good agreement between the measurement data and current work for unsteady shock motion indicates that the hybrid framework can model time-dependent flows accurately.
DOI: 10.48577/jpl.rpzk6z
title: Integrated Modeling of the James Webb Space Telescope: pre-Launch Predictions,Flight Performance and Lessons Learned

description: Because of its size and complexity, the Observatory performance of the James Webb Space Telescope (JWST) in its operating condition was primarily verified by analysis prior to launch, breaking the standard NASA paradigm of test-as-you-fly. Most of the requisite analytical predictions were achieved through Integrated Modeling which combines models of the various physics and subsystem behaviors affecting system-level performance: thermal, jitter, structures thermal distortion, gravity release and alignments, optics, wavefront sensing and control, attitude control, straylight and launch loads analysis. We will briefly describe the process by which models were managed, constructed, verified, validated, and used to support the analyses. We will address how uncertainties were accounted for given the many unknowns of the nanometric performance of the first-of-its-kind large deployable cryogenic precision optics in space. Finally, we will compare the pre-flight predictions to actual performance on-orbit for several key analysis use cases and conclude with lessons learned for future missions.
DOI: 10.48577/jpl.ihecga
title: Strain Measurement in Coilable Thin Composite Shells with Embedded Fiber Bragg Grating Sensors

description: Progress towards the use of ultra-thin fiber Bragg grating sensors for the in-situ strain measurement of coilable thin composite shells is presented. The first part of this work presents the manufacturing procedure used in the construction of these composite shells with embedded sensors. The second part of this work investigates how embedded ultra-thin fiber Bragg grating sensors affect the bending stiffness and failure curvature of these laminates through the use of the column bending test. The influence of the embedded sensors on the failure of these laminates is further investigated through 𝜇CT imaging after failure.
DOI: 10.48577/jpl.qht0o2
title: Diffuse deformation and surface faulting distribution from optical image correlation and relation with the rupture process

description: No abstract available.
DOI: 10.48577/jpl.im9qgd
title: Extended Investigations of the Lower Hybrid Drift Instability in the Near-pole Plume of a Magnetically Shielded Hall Thruster

description: Previous analytical and numerical investigations conducted at JPL have predicted that the Modified Two-Stream (MTSI) and Lower Hybrid Drift (LHDI) instabilities can become active in the plume region downstream of the front magnet pole pieces of a magnetically shielded Hall thruster. The findings were based on the solution of the electrostatic dispersion equation for waves in a long-wavelength (k_y r_e≲1), low-frequency (ω_ci&lt;ω&lt;ω_ce) branch, and used the plasma conditions from 2-D axisymmetric multi-fluid/PIC simulations with the Hall2De code. In that previous work the solution for the LHDI was obtained in only a limited region of the plume. In this article we expanded that solution domain. The region of positive growth is now found to extend at least a pole-cover distance downstream of the front pole, and increases away from the magnet pole pieces towards the edges of the main ion beam. Here the damping effect of classical collisions is found to be relatively small (&lt;15%). As expected the wavenumbers that maximize LHDI growth yield k_y r_e~1 with the (thermal) electron Larmor radius ranging 0.1 ≲r_e≲0.5 mm in the regions studied. Finally, the effects of the magnetic field and electron temperature gradients have been compared to those associated with the density gradient. The former can become important as the ion beam is approached but are not as significant near the cathode plume
DOI: 10.48577/jpl.pv54ek
title: Forest degradation rates and carbon changes in the Brazilian Arc of Deforestation using repeated airborne lidar

description: No abstract available.
DOI: 10.48577/jpl.bgp5pi
title: IGS CB Updates Governing Board Meeting Presentation

description: No abstract available.
DOI: 10.48577/jpl.usmsbv
title: Optimal Estimation of snow biophysical properties - Application of a coupled atmosphere and surface radiative transfer model to spaceborne EMIT imaging spectrometer data

description: No abstract available.
DOI: 10.48577/jpl.9fr2f1
title: Ionospheric Total Electron Content Perturbations Driven by Magnetospheric Ultra Low Frequency Waves

description: No abstract available.
DOI: 10.48577/jpl.yx7rdk
title: Early Noachian Terrains: Vestiges of the Early Evolution of Mars

description: NASA's main scientific reason for exploring Mars is to determine the early evolution and the possibility of life on the red planet. Scientists have adopted an approach for identifying habitable environments on Mars that could be conducive to the early development and preservation of life (e.g., robotically exploring hydrothermal and lake deposits in impact basins). We believe the best approach in the search for life on Mars is to investigate the ancient terrains that exhibit sedimentological records comprising rock materials deposited during a time when Mars was more geologically and hydrologically active. A paradigm shift from investigating middle age (&lt;3.7 Ga) resurfaced Martian environments to exploring the extremely ancient (&gt;3.9 Ga) terrains is proposed here. Terra Cimmeria, Terra Sirenum, and Arabia Terra are all distinctly older terrains that have not been modified by the formation of the giant four impact basins (i.e., Hellas, Isidis, Argyre, and Chryse) and formed during a time when Mars contained a thicker atmosphere and operating dynamo/magnetic field. Exploring these ancient terrains will not only provide the best opportunity to inform on the earliest stage of Mars’ evolution but also the early Earth and solar system.