cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20337702
title: Supplementary Material for: Clinical and Preclinical Neuroimaging Changes in Spinocerebellar Ataxia Type 12: A Study of Three Chinese Pedigrees

description: <b><i>Background:</i></b> Spinocerebellar ataxia type 12 (SCA12) is a rare SCA subtype with unclear clinical and imaging features. Also, the radiological changes in prodromal and early stages remain unknown. <b><i>Methods:</i></b> Ten symptomatic and two pre­symptomatic cases from three Chinese pedigrees received clinical assessments and imaging studies including routine magnetic resonance imaging (MRI), diffusion kurtosis imaging (DKI), and positron emission tomography (PET) using <sup>18</sup>F-flurodeoxyglucose (FDG) to investigate glucose metabolism in brain and <sup>18</sup>F-vesicle monoamine transporter 2 (VMAT2) to inspect the integrity of the dopaminergic neuron. Seventy-two healthy individuals were recruited as controls in the quantitative FDG-PET analysis. Imaging parameters were compared between symptomatic and presymptomatic cases with different disease durations. <b><i>Results:</i></b> Patients displayed prominent action tremor, moderate ataxia, and subtle parkinsonism with poor levodopa-response. MRI showed extensive but heterogeneous cerebral atrophy, which was most evident in the frontoparietal lobes. Cerebellar atrophy was apparent in later stages. DKI detected impaired fibers in the cerebellar peduncles. In both symptomatic and pre­symptomatic cases, PET-CT showed an earlier FDG decline than atrophic changes in multiple regions, and the frontoparietal lobes were the earliest and most severe. However, the VMAT2 density were normal in the putamen and caudate nucleus of most cases (7/8). <b><i>Conclusions:</i></b> We first found that hypometabolism in the cerebral cortex, but not cerebellum, is an early and prominent change in SCA12. The integrity of presynaptic dopaminergic neurons remains largely spared during the whole disease process.
DOI: 10.6084/m9.figshare.20337702.v1
title: Supplementary Material for: Clinical and Preclinical Neuroimaging Changes in Spinocerebellar Ataxia Type 12: A Study of Three Chinese Pedigrees

description: <b><i>Background:</i></b> Spinocerebellar ataxia type 12 (SCA12) is a rare SCA subtype with unclear clinical and imaging features. Also, the radiological changes in prodromal and early stages remain unknown. <b><i>Methods:</i></b> Ten symptomatic and two pre­symptomatic cases from three Chinese pedigrees received clinical assessments and imaging studies including routine magnetic resonance imaging (MRI), diffusion kurtosis imaging (DKI), and positron emission tomography (PET) using <sup>18</sup>F-flurodeoxyglucose (FDG) to investigate glucose metabolism in brain and <sup>18</sup>F-vesicle monoamine transporter 2 (VMAT2) to inspect the integrity of the dopaminergic neuron. Seventy-two healthy individuals were recruited as controls in the quantitative FDG-PET analysis. Imaging parameters were compared between symptomatic and presymptomatic cases with different disease durations. <b><i>Results:</i></b> Patients displayed prominent action tremor, moderate ataxia, and subtle parkinsonism with poor levodopa-response. MRI showed extensive but heterogeneous cerebral atrophy, which was most evident in the frontoparietal lobes. Cerebellar atrophy was apparent in later stages. DKI detected impaired fibers in the cerebellar peduncles. In both symptomatic and pre­symptomatic cases, PET-CT showed an earlier FDG decline than atrophic changes in multiple regions, and the frontoparietal lobes were the earliest and most severe. However, the VMAT2 density were normal in the putamen and caudate nucleus of most cases (7/8). <b><i>Conclusions:</i></b> We first found that hypometabolism in the cerebral cortex, but not cerebellum, is an early and prominent change in SCA12. The integrity of presynaptic dopaminergic neurons remains largely spared during the whole disease process.
DOI: 10.6084/m9.figshare.20325195.v1
title: Github_dataset.zip

description: Using GitHub APIs, we construct an unbiased dataset of over 10 million GitHub users. The data was collected between Jul. 20 and Aug. 27, 2018, covering 10,000 users. Each data entry is stored in JSON format, representing one GitHub user, and containing the descriptive information in the user’s profile page, the information of her commit activities and created/forked public repositories.
DOI: 10.6084/m9.figshare.20325195.v2
title: A Representative User-centric GitHub Developers Dataset for malicious account detection

description: Using GitHub APIs, we construct an unbiased dataset of over 10 million GitHub users. The data was collected between Jul. 20 and Aug. 27, 2018, covering 10,000 users. Each data entry is stored in JSON format, representing one GitHub user, and containing the descriptive information in the user’s profile page, the information of her commit activities and created/forked public repositories. <br> Please cite the following paper when using the dataset: Qingyuan Gong, Jiayun Zhang, Yang Chen, Qi Li, Yu Xiao, Xin Wang, Pan Hui. Detecting Malicious Accounts in Online Developer Communities Using Deep Learning. Proc. of the 28th ACM International Conference on Information and Knowledge Management (CIKM'19), Beijing, China, Nov. 2019. <br> Download the file, and decompress the files with the following steps: (1) In Mac/Linux systems: (i) open the terminal and switch to the directory where you have downloaded the files (e.g. "cd Downloads/") (ii) run the command: "unzip Github_dataset.zip". (2) In Windows systems: use decompression software (e.g. WinZIP) to decompress the file "Github_dataset.zip". <br>
DOI: 10.3886/e173241v3
title: Spontaneous convergence in cooperating dyads as explained by a reinforcement learning model of conformity

description: Conformity is one of the most basic forms of social influence and it has been studied under a variety of conditions. However, little is known about the mechanisms which explain how convergence emerges and changes on the bases of exposure to other’s actions. Most of the paradigms used to study this phenomenon induce behavioural convergence using a group rating task, a judgement task or game theory competition/cooperation frameworks. The aim of the current research was to create an experimental paradigm where cooperation emerges naturally and allowed to study the process of learning to adapt to other’s behaviour. First, 40 dyads performed a set of activities, either individually (I) or cooperatively (C). Then, participants performed a dyadic decision-making task in which they had to decide the position of a point and had the chance to change their guesses based on their peer responses. Importantly, convergence of responses was not explicitly instructed, nor rewarded. Responses were modelled using a Reinforcement Learning (RL) algorithm. Results showed a significantly higher level of convergence in C compared to the I group. In addition, participants in the C group reported a more trusting, satisfactory, rewarded, and synched overall experience. Also, RL Temporal Difference algorithm showed higher learning rate and explained better the convergence behaviour of the C group compared to the I group. Our study validates a new proposal to study conformity spontaneously appearing under cooperation.
DOI: 10.6084/m9.figshare.19286159
title: Emplyoability 2022

description: Dataset to the article " <strong>Dispositional employability and self-regulation in antisocial and prosocial personalities: different contributions to employability"</strong>
DOI: 10.6084/m9.figshare.19286159.v1
title: Emplyoability 2022

description: Dataset to the article " <strong>Dispositional employability and self-regulation in antisocial and prosocial personalities: different contributions to employability"</strong>
DOI: 10.25402/fon.20337777
title: Supplementary Material – T cell-inflamed gene expression profile and PD-L1 expression and pembrolizumab efficacy in advanced esophageal cancer

description: <strong>Figure S1. </strong>Patient disposition by TcellinfGEP score at data cutoff (July 30, 2018). <strong>Figure S2.</strong> Patient disposition by PD-L1 CPS status at data cutoff (July 30, 2018). <strong>Table S1. </strong>Baseline characteristics by TcellinfGEP score. <strong>Table S2.</strong> Baseline characteristics by PD-L1 CPS status. <strong>Table S3. </strong>Prevalence of TcellinfGEP and PD-L1 CPS. <strong>Table S4.</strong> Clinical utility profile for PD-L1 CPS.
DOI: 10.25402/fon.20337777.v1
title: Supplementary Material – T cell-inflamed gene expression profile and PD-L1 expression and pembrolizumab efficacy in advanced esophageal cancer

description: <strong>Figure S1. </strong>Patient disposition by TcellinfGEP score at data cutoff (July 30, 2018). <strong>Figure S2.</strong> Patient disposition by PD-L1 CPS status at data cutoff (July 30, 2018). <strong>Table S1. </strong>Baseline characteristics by TcellinfGEP score. <strong>Table S2.</strong> Baseline characteristics by PD-L1 CPS status. <strong>Table S3. </strong>Prevalence of TcellinfGEP and PD-L1 CPS. <strong>Table S4.</strong> Clinical utility profile for PD-L1 CPS.
DOI: 10.5281/zenodo.6807118
title: The effects of ants on pest control: a meta-analysis

description: Dataset and R codes of "The effects of ants on pest control: a meta-analysis" by Anjos et al. (2023). We searched for papers in Web of Science<sup>©</sup> and Scopus<sup>©</sup> databases using all available years up to 31st March 2021. We used the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) protocol for paper search (Moher et al., 2000). We used the following key terms in our search: “ant” AND “biological” AND “control”. To complement our dataset, we searched for more studies in recent reviews (Anjos et al., 2021; Diamé et al., 2018; Drummond and Choate, 2011; Offenberg, 2015; Rosumek et al., 2009; Thurman et al., 2019; Trager et al., 2010; van Mele et al., 2008). We selected studies according to two criteria. Studies must have: (i) investigated ant effects on abundance of pests or natural enemies, or effects of ants on plant damage (i.e., damaged leaves or fruit, lost fruit or lost leaf area) or crop yield (i.e., fruit production and fruit biomass); (ii) experimentally evaluated the influence of ants by contrasting ant presence with ant exclusion (e.g., ants have been excluded using physical or chemical barriers) on agrosystems. Our initial search identified 2,682 studies (1207 in Web of Science<sup>©</sup> and 1475 in Scopus<sup>©</sup>) that were potentially appropriate for our review. Of these, 678 were eliminated because they were duplicates and 1953 because they were not about the subject of interest or they were not about studies that compared the ant presence and exclusion protocols (Supporting Information, Fig. S1). Then, after applying our initial inclusion criteria (i, ii), 52 studies from our search remained in our dataset (Supporting Information, Table S1). Overall, these studies provided 857 cases (gathered through effect size estimates) for our analyses
DOI: 10.5281/zenodo.6861355
title: Multiplexed DNA-FISH imaging dataset, drosophila embryos, nuclear cycles 11-14

description: Multiplexed DNA-FISH imaging dataset from Drosophila embryos at nuclear cycles 11-14. Examples on how to load and use this dataset can be found at this GitHub repository. <strong>Data processing details</strong> Barcodes were segmented using a neural network (<em>stardist</em>) specifically trained for the detection of 3D diffraction limited spots produced by our microscope. To extract the position of the barcode with sub-pixel accuracy, a subsequent 3D Gaussian fit of the regions segmented by <em>stardist</em> was performed with Big-FISH (https://github.com/fish-quant/big-fish). Barcode localizations with intensities lower than 1.5 times that of the background were filtered out. Nuclei were segmented from projected DAPI images using <em>stardist </em>with a neural network trained for detection of nuclei from <em>Drosophila</em> embryos under our imaging conditions. Barcodes were then attributed to single nuclei by using the XY coordinates of the barcodes and the DAPI masks of the nuclei. Finally, pairwise distance matrices were calculated for each single nucleus. <strong>Processed data in Figures</strong> This new version of the dataset contains the raw data for each of the figures in the manuscript: <strong>Associated publication</strong> <strong>Multiple parameters shape the 3D chromatin structure of single nuclei at the doc locus in </strong><em>Drosophila</em>. Markus Götz, Olivier Messina, Sergio Espinola, Jean-Bernard Fiche, Marcelo Nollmann Nature Communications (2022).
DOI: 10.5281/zenodo.5815195
title: Multiplexed DNA-FISH imaging dataset, drosophila embryos, nuclear cycles 11-14

description: Multiplexed DNA-FISH imaging dataset from Drosophila embryos at nuclear cycles 11-14. Examples on how to load and use this dataset can be found at this GitHub repository. <strong>Data processing details</strong> Barcodes were segmented using a neural network (<em>stardist</em>) specifically trained for the detection of 3D diffraction limited spots produced by our microscope. To extract the position of the barcode with sub-pixel accuracy, a subsequent 3D Gaussian fit of the regions segmented by <em>stardist</em> was performed with Big-FISH (https://github.com/fish-quant/big-fish). Barcode localizations with intensities lower than 1.5 times that of the background were filtered out. Nuclei were segmented from projected DAPI images using <em>stardist </em>with a neural network trained for detection of nuclei from <em>Drosophila</em> embryos under our imaging conditions. Barcodes were then attributed to single nuclei by using the XY coordinates of the barcodes and the DAPI masks of the nuclei. Finally, pairwise distance matrices were calculated for each single nucleus. <strong>Processed data in Figures</strong> This new version of the dataset contains the raw data for each of the figures in the manuscript: <strong>Associated publication</strong> <strong>Multiple parameters shape the 3D chromatin structure of single nuclei at the doc locus in </strong><em>Drosophila</em>. Markus Götz, Olivier Messina, Sergio Espinola, Jean-Bernard Fiche, Marcelo Nollmann Nature Communications (2022).
DOI: 10.6084/m9.figshare.20337774
title: Feature_Selection_GK

description: The main datasets (IFS-LGBM) for "Evaluation of Principal Features for Predicting Bulk and Shear Modulus of Inorganic Solids with Machine Learning".
DOI: 10.6084/m9.figshare.20337774.v1
title: Evaluation of Principal Features for Predicting Bulk and Shear Modulus of Inorganic Solids with Machine Learning

description: The main datasets (IFS-LGBM) for "Evaluation of Principal Features for Predicting Bulk and Shear Modulus of Inorganic Solids with Machine Learning".
DOI: 10.5281/zenodo.6860717
title: Spatial Database of Pondscapes

description: The spatial distribution of the pondscapes in Europe were obtained from global and local databases and presented in deliverable D3.2 (report on spatial distribution of pondscapes in Europe). However, the information was too coarse and necessary features of the ponds could not be retrieved from the available local databases. Therefore, available datasets from each participant country were collected and a common database was created. This database consists of spatial information such as latitude and longitude of the ponds in geographic coordinates, name, code, land cover, intensity, hydro period, surface area, perimeter, maximum depth, mean depth, altitude, measurement year, created year, information about work packages and installed sensor information. Geocoded and detailed GIS layers showing all ponds were created and it will be used as ground truth for mapping and validating hydro period information. A web application has been developed to display spatial distribution and available information of ponds from the individual countries. The application allows users to dynamically visualize the ponds and download pond’s available data, hydro period information and pond database spatially: https://ponderful.hidrosaf.com/.
DOI: 10.5281/zenodo.6860716
title: Spatial Database of Pondscapes

description: The spatial distribution of the pondscapes in Europe were obtained from global and local databases and presented in deliverable D3.2 (report on spatial distribution of pondscapes in Europe). However, the information was too coarse and necessary features of the ponds could not be retrieved from the available local databases. Therefore, available datasets from each participant country were collected and a common database was created. This database consists of spatial information such as latitude and longitude of the ponds in geographic coordinates, name, code, land cover, intensity, hydro period, surface area, perimeter, maximum depth, mean depth, altitude, measurement year, created year, information about work packages and installed sensor information. Geocoded and detailed GIS layers showing all ponds were created and it will be used as ground truth for mapping and validating hydro period information. A web application has been developed to display spatial distribution and available information of ponds from the individual countries. The application allows users to dynamically visualize the ponds and download pond’s available data, hydro period information and pond database spatially: https://ponderful.hidrosaf.com/.
DOI: 10.25326/367
title: Ceilometer Measurements BCO

description: Ceilometer measurements collected at the Barbados Cloud Observatory during the EUREC4A field campaign from 20.01.2020 to 20.02.2020. Note that the old instrument was replaced on 09.02.2020 with a new device of the same type (device_name changed from CHM140102 to CHM170159).
DOI: 10.6084/m9.figshare.20337789
title: ORIGINAL VS EXPERT-REVISED LEARNER WRITING: ARGUMENTATIVE WRITING OF CHINESE UNIVERSITY STUDENTS

description: This dataset contains student samples and expert-revised samples in a study that explores Chinese university students' argumentative writing.
DOI: 10.6084/m9.figshare.20337789.v1
title: ORIGINAL VS EXPERT-REVISED LEARNER WRITING: ARGUMENTATIVE WRITING OF CHINESE UNIVERSITY STUDENTS

description: This dataset contains student samples and expert-revised samples in a study that explores Chinese university students' argumentative writing.
DOI: 10.5281/zenodo.6861487
title: DE SAM 2018

description: DE SAM for 2018. Method available from: Emonts-Holley, T., Ross, A., & Swales, J. (2014). A social accounting matrix for Scotland. Fraser of Allander Economic Commentary, 38(1), 84-93. https://pureportal.strath.ac.uk/en/publications/a-social-accounting-matrix-for-scotland
description: {"references": ["Emonts-Holley, T., Ross, A., & Swales, J. (2014). A social accounting matrix for Scotland. Fraser of Allander Economic Commentary, 38(1), 84-93.", "\u00c1lvarez-Mart\u00ednez, M. T., & L\u00f3pez-Cobo, M. (2018). WIOD SAMs adjusted with Eurostat data for the EU-27. Economic Systems Research, 30(4), 521-544.", "Elshof, G., Luckmann, J., & Siddig, K. (2022). A 2018 Social Accounting Matrix for Germany depicting waste and recycling accounts for a circular economy (No. 897-2022-1021).", "Eurostat - IO Table and Control Totals", "Stadler K, R. Wood, T. Bulavskaya, C.J. Sodersten, M. Simas, S. Schmidt, A. Usubiaga, J. Acosta-Fernandez, J. Kuenen, M. Bruckner, S. Giljum, S. Lutter, S. Merciai, J.H. Schmidt, M.C. Theurl, C. Plutzar, T. Kastner, M. Eisenmenger, K. Erb, A. de Koning, A. Tukker (2018) EXIOBASE 3: Developing a Time Series of Detailed Environmentally Extended Multi-Regional Input-Output Tables, Journal of Industrial Ecology 22(3)502-515. doi: 10.1111/jiec.12715"]}
DOI: 10.5281/zenodo.6832375
title: DE SAM 2018

description: DE SAM for 2018. Method available from: Emonts-Holley, T., Ross, A., & Swales, J. (2014). A social accounting matrix for Scotland. Fraser of Allander Economic Commentary, 38(1), 84-93. https://pureportal.strath.ac.uk/en/publications/a-social-accounting-matrix-for-scotland
description: {"references": ["Emonts-Holley, T., Ross, A., & Swales, J. (2014). A social accounting matrix for Scotland. Fraser of Allander Economic Commentary, 38(1), 84-93.", "\u00c1lvarez-Mart\u00ednez, M. T., & L\u00f3pez-Cobo, M. (2018). WIOD SAMs adjusted with Eurostat data for the EU-27. Economic Systems Research, 30(4), 521-544.", "Elshof, G., Luckmann, J., & Siddig, K. (2022). A 2018 Social Accounting Matrix for Germany depicting waste and recycling accounts for a circular economy (No. 897-2022-1021).", "Eurostat - IO Table and Control Totals", "Stadler K, R. Wood, T. Bulavskaya, C.J. Sodersten, M. Simas, S. Schmidt, A. Usubiaga, J. Acosta-Fernandez, J. Kuenen, M. Bruckner, S. Giljum, S. Lutter, S. Merciai, J.H. Schmidt, M.C. Theurl, C. Plutzar, T. Kastner, M. Eisenmenger, K. Erb, A. de Koning, A. Tukker (2018) EXIOBASE 3: Developing a Time Series of Detailed Environmentally Extended Multi-Regional Input-Output Tables, Journal of Industrial Ecology 22(3)502-515. doi: 10.1111/jiec.12715"]}
DOI: 10.6084/m9.figshare.19229687
title: Low-cost digital microfluidic approach on thin and pliable polymer films

description: A digital microfluidic device fabricated with a thin and pliable polyester film is reported with control by a custom-made battery-powered high voltage amplification circuit. Droplet movement on the tilt or curved surface was achieved. A low-cost approach for the fabrication of digital microfluidic device was used: the electrodes on the digital microfluidic device were fabricated with conductive carbon ink screen-printed on a polyester substrate, a layer of thin polyethylene film was used to seal and insulate the electrodes, and a layer of water repellent was coated on the surface of polyethylene film to enhance the hydrophobicity. The device is transparent and pliable, with a total thickness of approximately 70 μm. The controlled droplet movement on the curved polymer surface based on electrowetting was achieved with the compact voltage amplification circuit and the corresponding control algorithm. The fabrication for the proposed digital microfluidic device is low-cost and without sophisticated microfabrication instrumentation. Furthermore, the system is portable and may have widespread point-of-care in biological and medical applications.
DOI: 10.6084/m9.figshare.19229687.v1
title: Low-cost digital microfluidic approach on thin and pliable polymer films

description: A digital microfluidic device fabricated with a thin and pliable polyester film is reported with control by a custom-made battery-powered high voltage amplification circuit. Droplet movement on the tilt or curved surface was achieved. A low-cost approach for the fabrication of digital microfluidic device was used: the electrodes on the digital microfluidic device were fabricated with conductive carbon ink screen-printed on a polyester substrate, a layer of thin polyethylene film was used to seal and insulate the electrodes, and a layer of water repellent was coated on the surface of polyethylene film to enhance the hydrophobicity. The device is transparent and pliable, with a total thickness of approximately 70 μm. The controlled droplet movement on the curved polymer surface based on electrowetting was achieved with the compact voltage amplification circuit and the corresponding control algorithm. The fabrication for the proposed digital microfluidic device is low-cost and without sophisticated microfabrication instrumentation. Furthermore, the system is portable and may have widespread point-of-care in biological and medical applications.
DOI: 10.5281/zenodo.6861551
title: datas of Figure 4 of paper "Photonic and Optomechanical Thermometry", Optics 2022, 3, 159–176 (doi.org/10.3390/opt3020017)

description: The datas of Figure 4. include (a) Sensitivity (expressed in nm / °C unit) of three different silicon ring resonators photonic thermometers expressed depending on the value of their radius of curvature.and gap between linear and ring waveguides. (b) Residuals of linear fit, (c) Residuals of 4th degree Polynomial fit.