cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11302721
title: Video 2 from Wave polarization and dynamic degeneracy in a chiral elastic lattice

description: This paper addresses fundamental questions arising in the theory of Bloch–Floquet waves in chiral elastic lattice systems. This area has received a significant attention in the context of ‘topologically protected’ waveforms. Although practical applications of chiral elastic lattices are widely appreciated, especially in problems of controlling low-frequency vibrations, wave polarization and filtering, the fundamental questions of the relationship of these lattices to classical waveforms associated with longitudinal and shear waves retain a substantial scope for further development. The notion of chirality is introduced into the systematic analysis of dispersive elastic waves in a doubly-periodic lattice. Important quantitative characteristics of the dynamic response of the lattice, such as lattice flux and lattice circulation, are used in the analysis along with the novel concept of ‘vortex waveforms’ that characterize the dynamic response of the chiral system. We note that the continuum concepts of pressure and shear waves do not apply for waves in a lattice, especially in the case when the wavelength is comparable with the size of the elementary cell of the periodic structure. Special critical regimes are highlighted when vortex waveforms become dominant. Analytical findings are accompanied by illustrative numerical simulations.
DOI: 10.6084/m9.figshare.11302718.v1
title: Video 1 from Wave polarization and dynamic degeneracy in a chiral elastic lattice

description: This paper addresses fundamental questions arising in the theory of Bloch–Floquet waves in chiral elastic lattice systems. This area has received a significant attention in the context of ‘topologically protected’ waveforms. Although practical applications of chiral elastic lattices are widely appreciated, especially in problems of controlling low-frequency vibrations, wave polarization and filtering, the fundamental questions of the relationship of these lattices to classical waveforms associated with longitudinal and shear waves retain a substantial scope for further development. The notion of chirality is introduced into the systematic analysis of dispersive elastic waves in a doubly-periodic lattice. Important quantitative characteristics of the dynamic response of the lattice, such as lattice flux and lattice circulation, are used in the analysis along with the novel concept of ‘vortex waveforms’ that characterize the dynamic response of the chiral system. We note that the continuum concepts of pressure and shear waves do not apply for waves in a lattice, especially in the case when the wavelength is comparable with the size of the elementary cell of the periodic structure. Special critical regimes are highlighted when vortex waveforms become dominant. Analytical findings are accompanied by illustrative numerical simulations.
DOI: 10.6084/m9.figshare.11302721.v1
title: Video 2 from Wave polarization and dynamic degeneracy in a chiral elastic lattice

description: This paper addresses fundamental questions arising in the theory of Bloch–Floquet waves in chiral elastic lattice systems. This area has received a significant attention in the context of ‘topologically protected’ waveforms. Although practical applications of chiral elastic lattices are widely appreciated, especially in problems of controlling low-frequency vibrations, wave polarization and filtering, the fundamental questions of the relationship of these lattices to classical waveforms associated with longitudinal and shear waves retain a substantial scope for further development. The notion of chirality is introduced into the systematic analysis of dispersive elastic waves in a doubly-periodic lattice. Important quantitative characteristics of the dynamic response of the lattice, such as lattice flux and lattice circulation, are used in the analysis along with the novel concept of ‘vortex waveforms’ that characterize the dynamic response of the chiral system. We note that the continuum concepts of pressure and shear waves do not apply for waves in a lattice, especially in the case when the wavelength is comparable with the size of the elementary cell of the periodic structure. Special critical regimes are highlighted when vortex waveforms become dominant. Analytical findings are accompanied by illustrative numerical simulations.
DOI: 10.6084/m9.figshare.11302724.v1
title: Video 4 from Wave polarization and dynamic degeneracy in a chiral elastic lattice

description: This paper addresses fundamental questions arising in the theory of Bloch–Floquet waves in chiral elastic lattice systems. This area has received a significant attention in the context of ‘topologically protected’ waveforms. Although practical applications of chiral elastic lattices are widely appreciated, especially in problems of controlling low-frequency vibrations, wave polarization and filtering, the fundamental questions of the relationship of these lattices to classical waveforms associated with longitudinal and shear waves retain a substantial scope for further development. The notion of chirality is introduced into the systematic analysis of dispersive elastic waves in a doubly-periodic lattice. Important quantitative characteristics of the dynamic response of the lattice, such as lattice flux and lattice circulation, are used in the analysis along with the novel concept of ‘vortex waveforms’ that characterize the dynamic response of the chiral system. We note that the continuum concepts of pressure and shear waves do not apply for waves in a lattice, especially in the case when the wavelength is comparable with the size of the elementary cell of the periodic structure. Special critical regimes are highlighted when vortex waveforms become dominant. Analytical findings are accompanied by illustrative numerical simulations.
DOI: 10.6084/m9.figshare.11302682
title: Test file_Novel Object_goat U4

description: ECG data aquired using BioHarness and Zephyr Loggers from Biopac. Data was obtained during a 5min Novel Object Test in goats.
DOI: 10.6084/m9.figshare.11302700
title: Test file_Novel Object Test_goat V5

description: ECG data aquired with BioHarness and Zephyr Loggers from Biopac during a 5min Novel Object Test in goat number V5.
DOI: 10.6084/m9.figshare.11302712.v1
title: Video 3 from Wave polarization and dynamic degeneracy in a chiral elastic lattice

description: This paper addresses fundamental questions arising in the theory of Bloch–Floquet waves in chiral elastic lattice systems. This area has received a significant attention in the context of ‘topologically protected’ waveforms. Although practical applications of chiral elastic lattices are widely appreciated, especially in problems of controlling low-frequency vibrations, wave polarization and filtering, the fundamental questions of the relationship of these lattices to classical waveforms associated with longitudinal and shear waves retain a substantial scope for further development. The notion of chirality is introduced into the systematic analysis of dispersive elastic waves in a doubly-periodic lattice. Important quantitative characteristics of the dynamic response of the lattice, such as lattice flux and lattice circulation, are used in the analysis along with the novel concept of ‘vortex waveforms’ that characterize the dynamic response of the chiral system. We note that the continuum concepts of pressure and shear waves do not apply for waves in a lattice, especially in the case when the wavelength is comparable with the size of the elementary cell of the periodic structure. Special critical regimes are highlighted when vortex waveforms become dominant. Analytical findings are accompanied by illustrative numerical simulations.
DOI: 10.6084/m9.figshare.11302682.v1
title: Test file_Novel Object_goat U4

description: ECG data aquired using BioHarness and Zephyr Loggers from Biopac. Data was obtained during a 5min Novel Object Test in goats.
DOI: 10.6084/m9.figshare.11302700.v1
title: Test file_Novel Object Test_goat V5

description: ECG data aquired with BioHarness and Zephyr Loggers from Biopac during a 5min Novel Object Test in goat number V5.
DOI: 10.6084/m9.figshare.11302607
title: Sequences_tumour_volume_350mm3

description: Sequences_tumour_volume_350mm3
DOI: 10.6084/m9.figshare.11302592
title: Sequences_tumour_volume_50mm3

description: Sequences_tumour_volume_50mm3
DOI: 10.6084/m9.figshare.11302592.v2
title: Sequences_tumour_volume_50mm3

description: Sequences_tumour_volume_50mm3
DOI: 10.6084/m9.figshare.11302592.v1
title: The gut microbiota may drive the radiosensitising effect of a high fibre diet

description: Sequences_tumour_volume_50mm3
DOI: 10.6084/m9.figshare.11302508
title: Dataset for: Bacteriocin ASM1 is an O/S-diglycosylated, plasmid-encoded homologue of glycocin F

description: <i>Lactobacillus plantarum</i> A-1 secretes bacteriocin ASM1, with a calculated monoisotopic mass of 4642.8454 Da (based on the 43 amino acid sequence) and a measured mass of 5044.9727 Da. Here we show that ASM1 is a glycocin (glycosylated bacteriocin) with <i>O</i>- and <i>S</i>-linked <i>N</i>-acetylglucosamine moieties identical to glycocin F (GccF), and that the roles of specific structural features of ASM1 are very similar to GccF. Analysis of <i>Lb. plantarum</i> A-1 genomic DNA sequences showed that <i>asm</i> gene organisation (<i>asmH←→asmABCDE→F</i>) is identical to the <i>gcc</i> gene cluster, and that the <i>asm</i> genes reside on the novobiocin-curable 11,905-bp plasmid pA1_ASM1. Amino acid sequence identity averages ~69% across all Asm and Gcc proteins, and is highest for the identical ASM1/GccF peptide scaffold residues 1-30.
DOI: 10.6084/m9.figshare.11302418
title: Appendix 2

description: Annotated top TWAS associations from DGRP insecticide phenotypes
DOI: 10.6084/m9.figshare.11302508.v1
title: Dataset for: Bacteriocin ASM1 is an O/S-diglycosylated, plasmid-encoded homologue of glycocin F

description: <i>Lactobacillus plantarum</i> A-1 secretes bacteriocin ASM1, with a calculated monoisotopic mass of 4642.8454 Da (based on the 43 amino acid sequence) and a measured mass of 5044.9727 Da. Here we show that ASM1 is a glycocin (glycosylated bacteriocin) with <i>O</i>- and <i>S</i>-linked <i>N</i>-acetylglucosamine moieties identical to glycocin F (GccF), and that the roles of specific structural features of ASM1 are very similar to GccF. Analysis of <i>Lb. plantarum</i> A-1 genomic DNA sequences showed that <i>asm</i> gene organisation (<i>asmH←→asmABCDE→F</i>) is identical to the <i>gcc</i> gene cluster, and that the <i>asm</i> genes reside on the novobiocin-curable 11,905-bp plasmid pA1_ASM1. Amino acid sequence identity averages ~69% across all Asm and Gcc proteins, and is highest for the identical ASM1/GccF peptide scaffold residues 1-30.
DOI: 10.6084/m9.figshare.11302415
title: Appendix 1

description: Annotated top GWAS associations from DGRP insecticide phenotypes<br>
DOI: 10.6084/m9.figshare.11302394
title: Is the “Habsburg jaw” related to inbreeding?

description: <b>Background:</b> The “Habsburg jaw” has long been associated with inbreeding due to the high prevalence of consanguineous marriages in the Habsburg dynasty. However, it is thought that mandibular prognathism (MP) is under the influence of a dominant major gene. <b>Aim:</b> To investigate the relationship between the “Habsburg jaw” and the pedigree-based inbreeding coefficient (<i>F</i>) as a relative measure of genome homozygosity. <b>Subjects and methods:</b> The degree of MP and maxillary deficiency (MD) of 15 members of the Habsburg dynasty was quantified through the clinical analysis of 18 dysmorphic features diagnosed from 66 portraits. <b>Results:</b> A statistically significant correlation (<i>r</i> = 0.711, <i>p</i> = 0.003) between MP and MD was observed among individuals. Only MP showed a statistically significant positive regression on <i>F</i> as evidenced from univariate analysis (<i>b</i> = 6.36 ± 3.34, <i>p</i> = 0.040) and multivariate analysis (PCA) performed from single dysmorphic features (<i>b</i> = 14.10 ± 6.62, <i>p</i> = 0.027, for the first PC). <b>Conclusion:</b> Both MP and MD are generally involved in the “Habsburg jaw.” The results showed a greater sensitivity to inbreeding for the lower third of the face and suggest a positive association between the “Habsburg jaw” and homozygosity and therefore a basically recessive inheritance pattern.
DOI: 10.6084/m9.figshare.11302418.v1
title: Appendix 2

description: Annotated top TWAS associations from DGRP insecticide phenotypes
DOI: 10.6084/m9.figshare.11302415.v1
title: Appendix 1

description: Annotated top GWAS associations from DGRP insecticide phenotypes<br>
DOI: 10.6084/m9.figshare.11302364
title: Data-set for Rapid SERS Device for TBI Detection

description: Underlying data set for the study on the '<b>Rapid optofluidic detection of biomarkers for traumatic brain injury <i>via</i> surface-enhanced Raman spectroscopy</b>'.
DOI: 10.6084/m9.figshare.11302364.v1
title: figshare data files.zip

description: Underlying data set and images for the data analyses and figures for the study on the '<b>Rapid optofluidic detection of biomarkers for traumatic brain injury <i>via</i> surface-enhanced Raman spectroscopy</b>'.
DOI: 10.6084/m9.figshare.11302307
title: Dual inhibitor design for HIV-1 reverse transcriptase and integrase enzymes: a molecular docking study

description: HIV-1, a member of Retroviruses’ Lentivirus family, is the causative agent of AIDS. The virus is common throughout the world and leaves the body vulnerable to infections by suppressing the human immune system. Reverse transcriptase and integrase are two of three HIV-1 essential enzymes which perform important virus life cycle functions. In recent years, researchers started to design new inhibitors which could inhibit multiple targets for treatment of AIDS. In respect to this, RT and IN are two enzymes suitable for the development of dual inhibitors. To realize this aim, here we have designed new inhibitors by using approved reverse transcriptase and integrase inhibitors as drug design templates. Totally 426 ligands, which are filtered from 858 ligands by druggability properties were docked to crystal structure of reverse transcriptase and since there was no full-length structure of HIV-1 IN, same ligands were docked to Prototype Foamy Virus integrase structure. From the docking results, B099 was determined to be the best binding ligand to RT enzyme with a binding free energy of −12.63 kcal/mole and B249 was the best ligand for IN enzyme with a score of −19.83 kcal/mole. These binding scores demonstrate that these ligands are more active than Raltegravir for integrase and Rilpivirine for reverse transcriptase which are also used for docking method validation. B205, B214, B233, B242, B246, B249, B253 and B254 are the some of ligands found to have good binding scores for both enzymes and could be considered as new inhibitor candidates as dual inhibitors. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.11302364.v3
title: Data-set for Rapid SERS Device for TBI Detection

description: Underlying data set for the study on the '<b>Rapid optofluidic detection of biomarkers for traumatic brain injury <i>via</i> surface-enhanced Raman spectroscopy</b>'.
DOI: 10.6084/m9.figshare.11302307.v2
title: Dual inhibitor design for HIV-1 reverse transcriptase and integrase enzymes: a molecular docking study

description: HIV-1, a member of Retroviruses’ Lentivirus family, is the causative agent of AIDS. The virus is common throughout the world and leaves the body vulnerable to infections by suppressing the human immune system. Reverse transcriptase and integrase are two of three HIV-1 essential enzymes which perform important virus life cycle functions. In recent years, researchers started to design new inhibitors which could inhibit multiple targets for treatment of AIDS. In respect to this, RT and IN are two enzymes suitable for the development of dual inhibitors. To realize this aim, here we have designed new inhibitors by using approved reverse transcriptase and integrase inhibitors as drug design templates. Totally 426 ligands, which are filtered from 858 ligands by druggability properties were docked to crystal structure of reverse transcriptase and since there was no full-length structure of HIV-1 IN, same ligands were docked to Prototype Foamy Virus integrase structure. From the docking results, B099 was determined to be the best binding ligand to RT enzyme with a binding free energy of −12.63 kcal/mole and B249 was the best ligand for IN enzyme with a score of −19.83 kcal/mole. These binding scores demonstrate that these ligands are more active than Raltegravir for integrase and Rilpivirine for reverse transcriptase which are also used for docking method validation. B205, B214, B233, B242, B246, B249, B253 and B254 are the some of ligands found to have good binding scores for both enzymes and could be considered as new inhibitor candidates as dual inhibitors. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.11302289
title: S2 The characteristics and examples of sentences in each category of acknowledgement.pdf

description: Acknowledgement patterns. <br>
DOI: 10.6084/m9.figshare.11302280
title: S1 The acknowledgement categories.pdf

description: Acknowledgement categories.
DOI: 10.6084/m9.figshare.11302265
title: Preliminary evaluation of bitumen contamination in environmental samples using comprehensive gas chromatography GcxGc – Time of flight mass spectrometry (GCxGC-TOFMS)

description: Bitumen and bitumen impacted soil and water samples were investigated for their relative chemical composition using comprehensive gas chromatography GcxGc – time of flight mass spectrometry (GCxGC-TOFMS). The results reveal the presence of key compounds which could serve as environmental biomarkers for bitumen impacted soils and aquifers. Prominent alkanes such as 3-methylpentane; 2,2,4-trimethylpentane; 1,3,5-trimethyladamantane; 2,6,10-trimethyldodecane; 3-ethyl-2,2-dimethyl pentane were tentatively identified and are likely potent biomarkers in environmental forensic assessment of bitumen contamination while the presence of some aromatic compounds: 1,2-benzenedicarboxylic acid, 1,2-dimethyl-3-propylbenzene; 3,4-bis(methoxycarbonyl)benzoic acid; 1,3-bezenedicarboxylic acid, 1,2-benzenediol; 1,3-dimethylbenzene; 1,2-2-(2-ethylhexoxycarbonyl)benzoic acid; (4-methylpentan-2-yl)benzene; 2,4-dimethyl benzo(H)quinolone will further confirm the bitumen contamination in an area under investigation. A host of additional compounds were tentatively identified, mainly in the bitumen samples. The results obtained in this study provides baseline data for effective monitoring, and source apportionment of oil/oil products spills.
DOI: 10.6084/m9.figshare.11302280.v1
title: S1 The acknowledgement categories.pdf

description: Acknowledgement categories.
DOI: 10.6084/m9.figshare.11302265.v1
title: Preliminary evaluation of bitumen contamination in environmental samples using comprehensive gas chromatography GcxGc – Time of flight mass spectrometry (GCxGC-TOFMS)

description: Bitumen and bitumen impacted soil and water samples were investigated for their relative chemical composition using comprehensive gas chromatography GcxGc – time of flight mass spectrometry (GCxGC-TOFMS). The results reveal the presence of key compounds which could serve as environmental biomarkers for bitumen impacted soils and aquifers. Prominent alkanes such as 3-methylpentane; 2,2,4-trimethylpentane; 1,3,5-trimethyladamantane; 2,6,10-trimethyldodecane; 3-ethyl-2,2-dimethyl pentane were tentatively identified and are likely potent biomarkers in environmental forensic assessment of bitumen contamination while the presence of some aromatic compounds: 1,2-benzenedicarboxylic acid, 1,2-dimethyl-3-propylbenzene; 3,4-bis(methoxycarbonyl)benzoic acid; 1,3-bezenedicarboxylic acid, 1,2-benzenediol; 1,3-dimethylbenzene; 1,2-2-(2-ethylhexoxycarbonyl)benzoic acid; (4-methylpentan-2-yl)benzene; 2,4-dimethyl benzo(H)quinolone will further confirm the bitumen contamination in an area under investigation. A host of additional compounds were tentatively identified, mainly in the bitumen samples. The results obtained in this study provides baseline data for effective monitoring, and source apportionment of oil/oil products spills.
DOI: 10.6084/m9.figshare.11302229
title: Data For "New Approach to Understanding the Vertical Distribution of Biomass Burning Carbon Monoxide Based on Climatological MOPITT Vertical Measurements"

description: The data placed in figure_1.mat contains the set of three 2-dimensional fields corresponding to the following: (a) the GFED total carbon emissions (g/m2) from 2000 to 2018 over the high fire regions (cutoff is based on a 3-year running local sum of 30g/m2); (b) the spatial distribution of the normalized standard deviation of the MOPITT Co surface level concentration when DFS&gt;1.5; and (c) the biomass burning regions constrained where the normalized standard deviation of the MOPITT CO surface concentration is larger than 0.30, over land, and located between 60oS and 60oN. The latitude and Longitude are also given lat and lon. The data placed in figure_2.mat contains the biomass burning emission regions constrained by the normalized standard deviation greater than 0.30 on each pressure level respectively from 900mb to 300mb. The variable name is re_# where 9 to 3 respectively correspond to 900mb to 300mb. The data placed in figure_3_s3.mat contains the time series of average CO concentrations at the surface and every vertical level to which the respective biomass burning CO has been lofted from the surface to 300mb. This is a function of the respective regions, based on the results in Table 1 of the referenced paper. shortname_#_ts where “shortname” can be: mex (Mexico), sam (South America), caf (Central Africa), saf (Southern Africa), csea (Continential Southeast Asia), mc (Maritime Continent), and aus (Australia), and the # means the same as above. The data placed in figure_s1.mat contains the weekly time series of the row sums of the vertical sensitivity retrieval matrix averaged over the spatial regions given in Fig 1c from 1000mb to 100mb in each file k_shortname, where shortname is the same as in figure_3_s3.mat. The time series of the weekly averaged retrieved CO concentration at 700mb over each region is also given as MRP700_shortname.
DOI: 10.6084/m9.figshare.11302064
title: MOESM3 of Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly

description: Additional file 3. Antibiotic resistance genes detected. Resistance genes detected within read cloud and conventional samples by aligning assembled sequences against the CARD database (separate tabs for time points A, C, D, and E, for both read cloud and conventional methods).
DOI: 10.6084/m9.figshare.11302061
title: MOESM2 of Statistical modeling of STR capillary electrophoresis signal

description: Additional file 2 Provides the optimum locus parameters values for four drop-out model components and 6 datasets.
DOI: 10.6084/m9.figshare.11302064.v1
title: MOESM3 of Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly

description: Additional file 3. Antibiotic resistance genes detected. Resistance genes detected within read cloud and conventional samples by aligning assembled sequences against the CARD database (separate tabs for time points A, C, D, and E, for both read cloud and conventional methods).
DOI: 10.6084/m9.figshare.11302055
title: MOESM2 of Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly

description: Additional file 2. Draft genomes generated by read cloud assembly. Binning results and assembly metrics for Athena draft genomes generated for all stool samples sequenced using read clouds (separate tabs for time points A, C, D, and E).