cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/phm6ztsd9t
title: Lactobacillus mucosae DPC 6426 as a Bile-Modifying and Immunomodulatory Microbe

description: DATA Four separate documents are contained herein. The first pertains to bile deconjugation profiling and bile salt hydrolase activity displayed by a number of Lactobacillus mucosae and Lactobacillus reuteri strains. The sheets contained within this file include "Protein Extract BSH Assay", "Bile Deconjugation by Class" and "Bile Deconjugation Complete", with the latter two containing data for both murine and porcine bile exposures. The second document contains cytokine gene expression and media concentrations of same following exposures of RAW264.7 macrophages to varying levels of exopolysaccharide (EPS) and secretome of Lactobacillus mucosae DPC 6426. Data includes IL-10, IL-6, TNF-a, CD206 and iNOS expression, as well as medium concentrations of IL-10 and NO, and cell viability assays. The third contains reactive oxygen species release results from both promyelocyte cell line and human isolated neutrophils following exposures to varying levels of EPS. The final document contains data relating to TLR reporter assays in human embryonic kidney cells following exposures to varying levels of EPS. ABSTRACT Background | Lactobacillus mucosae DPC 6426 has previously demonstrated potentially cardio-protective properties, in the form of dyslipidaemia and hypercholesterolemia correction in an apolipoprotein-E deficient mouse model. This study aims to characterise the manner in which this microbe may modulate host bile pool composition and immune response, in the context of cardiovascular disease. Lactobacillus mucosae DPC 6426 was assessed for bile salt hydrolase activity and specificity. The microbe was compared against several other enteric strains of the same species, as well as a confirmed bile salt hydrolase-active strain, Lactobacillus reuteri APC 2587. Results | Quantitative bile salt hydrolase assays revealed that enzymatic extracts from Lactobacillus reuteri APC 2587 and Lactobacillus mucosae DPC 6426 demonstrate the greatest activity in vitro. Bile acid profiling of porcine and murine bile following incubation with Lactobacillus mucosae DPC 6426 confirmed a preference for hydrolysis of glyco-conjugated bile acids. In addition, the purified exopolysaccharide and secretome of Lactobacillus mucosae DPC 6426 were investigated for immunomodulatory capabilities using RAW264.7 macrophages. Gene expression data revealed that both fractions stimulated increases in interleukin-6 and interleukin-10 gene transcription in the murine macrophages, while the entire secretome was necessary to increase CD206 transcription. Moreover, the EPS elicited a dose-dependent increase in nitric oxide and interleukin-10 production from RAW264.7 macrophages, concurrent with increased tumour necrosis factor- secretion at all doses. Conclusions | This study indicates that Lactobacillus mucosae DPC 6426 modulates both bile pool composition and immune system tone in a manner which may contribute significantly to the previously identified cardio-protective phenotype.
DOI: 10.17632/ps2stx5zzf
title: Automatic generation of tree level helicity amplitudes

description: Abstract The program MadGraph is presented which automatically generates postscript Feynman diagrams and Fortran code to calculate arbitrary tree level helicity amplitudes by calling HELAS[1] subroutines. The program is written in Fortran and is available in Unix and VMS versions. MadGraph currently includes standard model interactions of QCD and QFD, but is easily modified to include additional models such as supersymmetry. Title of program: MadGraph Catalogue Id: ACTX_v1_0 Nature of problem Calculation of higher order tree level Feynman helicity amplitudes which involve several external particles can require the evaluation of hundreds of Feynman diagrams. Hand coding programs to compute these amplitudes is very time consuming and error-prone. For complex problems the widely used packages based on symbolic mathematics systems either produce inefficient code or fail because of excessive memory or CPU requirements. Versions of this program held in the CPC repository in Mendeley Data ACTX_v1_0; MadGraph; 10.1016/0010-4655(94)90084-1 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/wp36f7t3ft
title: Hadron-hadron collision mode in ReneSANCe-v1.3.0

description: We report an implementation of the hadron-hadron ($pp$ and $p\bar{p}$) collision mode to the Monte Carlo event generator ReneSANCe~--- the code that was previously developed for $e^{+}e^{-}$
collisions. The described extension of ReneSANCe currently contains neutral and charged current Drell-Yan processes $pp[p\bar{p}] \to ZX \to \ell^+\ell^-X$, $pp[p\bar{p}] \to W^+X \to \ell^+\nu_\ell X$ and $pp[p\bar{p}] \to W^-X \to \ell^-\bar{\nu}_\ell X$. We take into account complete one-loop electroweak (EW) and one-loop QCD corrections to these processes. The calculation is based on the SANC 
(Support for Analytic and Numeric Calculations for experiments at colliders) modules. The generator is constructed in such a way that new processes can be easily added. 
The paper contains a theoretical description of the SANC approach, numerical validations and a manual.
DOI: 10.17632/zng3vvgxny
title: What is the Most Effective Jasmonates Form in Promoting Tomato and Maize Defense Responses to Spodoptera exiguaHerbivory?

description: Jasmonates proposed to have a prospective key role in the plant insect interaction. This study conducted to clarify the role played by JA and its derivatives in defense responses of tomato and maize to Spodoptera exigua infestation. Chlorophyll a/b ratio, soluble carbohydrates, proteins and amino acids content measured in infested plants and uninfested controls after 2 h, 2 days and 1 week of infestation. JA, MeJA and JA-L-Ile were quantified using HPLC-MS/MS under the same experimental conditions. The results show that S. exigua attack did not change Chl a/b ratio in tomato, while maize recorded a greater adaptability at the beginning of the infestation by decreasing Chl a/b ratio. Soluble carbohydrates content did not change in infested tomato leaves compared to control, while increased in infested maize at 2 h and 2 days. Free amino acids content reduced lower than control in tomato leaves at all observed time periods due to S. exigua attack, while in maize higher concentrations of free amino acids accumulated in infested plants after 2 h and 2 days. In both plants, S. exigua infestation induced JA, MeJA and JA-L-Ile to high levels at 2 h then, decreased gradually by increasing infestation time. JA concentration in infested maize was much higher than that in infested tomato leaves. However, MeJA and JA-L-Ile concentration in infested tomato leaves was higher than that in maize. In control plants, JA did not record, while MeJA recorded in comparable values both in tomato and maize. Therefore, JA assumed to play the main role in increasing defense responses to S. exigua. infestation as a direct signaling molecule, however MeJA could play an indirect role by inducing JA accumulation.
DOI: 10.17632/c7ynv6x384
title: Dataset used in the research: Spatiotemporal patterns and integrated approach to prioritise areas for surveillance and control of visceral leishmaniasis in a large metropolitan area in Brazil.

description: We aimed to analyze the spatial and spatiotemporal patterns of VL occurrence and to identify priority risk areas for surveillance and control in the metropolitan region of Belo Horizonte-MG, Brazil. An ecological study was conducted considering all cases of VL in humans confirmed from 2006 to 2017, reported in Brazil’s national notification database (Notifiable Diseases Information System [SINAN]). We used databases from two different versions of SINAN: Windows version 2006 and TabNet version 2007–2017 (Ministry of Health, 2019). Therefore, we aggregated these two databases encompassing the entire period (2006–2017). Incidence rates were calculated annually and for 3-year periods for all MRBH municipalities. To calculate the incidence rates, each case was aggregated by municipality of residence (analytical unit). The population estimates were set considering projections of the Federal Court of Audit (Tribunal de Contas da União [TCU]) calculated yearly for each municipality, based on data from the IBGE (2018). The incidence rates were aggregated in 3 years, as follows: 1st triennium, 2006–2008; 2nd triennium, 2009–2011; 3rd triennium, 2012–2014; and 4th triennium, 2015–2017. The incidence rates per 100,000 inhabitants were calculated for each triennium. Cumulative incidence rates were re-estimated for the geographic analytical units and for each triennium using empirical Bayesian space smoothing. Calculations were performed using GeoDa version 1.10 software (Arizona State University / Center for Geospatial Analysis and Computation, n.d.). To perform the empirical Bayesian space smoothing analysis, the Moran’s Global Test and the Local Indicators of Spatial Association (LISA) were used to create the first order neighborhood matrix (Queen). The units of analysis that presented at p ≤ 0.05 in the LISA were considered statistically significant. In order to view the priority municipalities for surveillance, we made choropleth maps. The Moran’s Global and LISA were calculated using GeoDa software version 1.10 (Arizona State University / Center for Geospatial Analysis and Computation, n.d.), and maps were constructed using QGIS software version 2.18 (QGIS project, 2019). To identify spatiotemporal clusters, the SaTScan ™ 9.4.4 (Kulldorff, 2015) software scanning statistics was used. Statistical significance was considered when p &lt;0.05 (Kulldorff and Nagarwalla, 1995). The spatial scan statistical analyzes for this study were performed using the case data set, population, and location. To perform the tests, the information regarding each municipality was inserted in the software: 1) number of cases, 2) year of infection, 3) population average of the 3 years that make up the 3-year period studied, and 4) geocode of each municipality. All this information was entered for the entire period.
DOI: 10.17632/fx92rn85yj
title: Data for: Holographic Polymer Nanocomposites with Simultaneously Boosted Diffraction Efficiency and Upconversion Photoluminescence
DOI: 10.17632/rv8h2ybzp5
title: The multichannel eikonal theory program for electron-atom scattering

description: Abstract The operation of the code MET_cross for the solution of the semiclassical multichannel eikonal theory for electron-atom scattering is described. Also described is a second code, MET_states, which utilizes the results produced by MET_cross to generate a complete set of state multipoles and coherence and alignment parameters needed to characterize the polarization properties of the radiation emitted in the decay of the metastable atomic states excited in the collision. Included also is a discus... Title of program: MET_cross Catalogue Id: ADAW_v1_0 Nature of problem Calculation of the complex scattering amplitudes, differential and integral cross sections for the elastic and inelastic scattering of electrons by atoms in the intermediate to high energy regime. In addition, a characterization of the orientation and alignment of the atomic charge clouds via calculation of the coherence and correlation parameters. Versions of this program held in the CPC repository in Mendeley Data adaw_v1_0; MET_cross; 10.1016/0010-4655(94)00162-U This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/tvgpr7d4y2
title: Inhibitory control is associated with the activation of output-driven competitors in a spoken word recognition task

description: Although lexical competition has been ubiquitously observed in spoken word recognition, less has been known about whether the lexical competitors interfere with the recognition of the target and how lexical interference is resolved. The present study examined whether lexical competitors overlapping in output with the target would interfere with its recognition, and tested an underestimated hypothesis that the domain-general inhibitory control contributes to the resolution of lexical interference. Specifically, in this study, a Visual World Paradigm was used to access the temporal dynamics of lexical activations when participants were moving the mouse cursor to the written word form of the spoken word they heard. By using Chinese characters, the orthographic similarity between the lexical competitor and target was manipulated independently of their phonological overlap. The results demonstrated that behavioral performance in the similar condition was poorer compared to that in the control condition, and that individuals with better inhibitory control (having smaller Stroop interference effect) exhibited weaker activation of orthographic competitors (mouse trajectories less attracted by the orthographic competitors). The implications of these findings for our understanding of lexical interference and its resolution in spoken word recognition were discussed.
DOI: 10.17632/wyfx4s9gyv
title: ATUS-PRO: A FEM-based solver for the time-dependent and stationary Gross–Pitaevskii equation

description: Abstract ATUS-PRO is a solver-package written in C++ designed for the calculation of numerical solutions of the stationary- and the time dependent Gross–Pitaevskii equation for local two-particle contact interaction utilising finite element methods. These are implemented by means of the deal.II library (Bangerth et al., 0000) [1], (Bangerth et al., 2007) [2]. The code can be used in order to perform simulations of Bose–Einstein condensates in gravito-optical surface traps, isotropic and full anisotr... Title of program: ATUS-PRO Catalogue Id: AEZD_v1_0 Nature of problem Solving the Gross-Pitaevskii equation for Bose-Einstein condensates in external traps. Stationary solutions: computation of ground- as well as excited states. Real time propagation: calculation of time dependent solutions. Versions of this program held in the CPC repository in Mendeley Data AEZD_v1_0; ATUS-PRO; 10.1016/j.cpc.2015.12.004 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/xktzhx8bxs
title: Impact of Dermatologic Consultation on Cutaneous Immune-Related Adverse Events in Cancer Patients

description: Though cutaneous immune-related adverse events (cirAEs) are common among patients on immune checkpoint inhibitors, relationships between dermatology referral, cirAE treatment, and survival outcomes remain underexplored. In this study, we sought to comprehensively categorize cirAE patterns among all patients treated with immunotherapy at our institution, and to evaluate 1) the effect of dermatology referral on cirAE treatment, and 2) the impact of cirAE treatment on survival.
DOI: 10.17632/y8zhwy828c
title: Data for: Heterogeneities of seepage pore and fracture of high volatile bituminous coal core: Implications on water invasion degree

description: Three tables are attached in the supplementary data, namely Table S1, S2, and S3. Table S1 demonstrates the fracture porosity, minerals’filling porosity, connected fracture porosity and unconnected fracture porosity extracted by means of the inversion of Micro-CT image. Table S2 displays the pore structural parameters extracted from MIP data. Table S3 demonstrates the fractal dimensions calculating results.
DOI: 10.17632/7s4sddgpj6
title: Data for: Selective synthesis of oxazoles and pyrazines from 2-bromo-1-phenylethanone using a by-product-promoted strategy
DOI: 10.17632/dydtm2k93h
title: test

description: test
DOI: 10.17632/f44z2rsfcc
title: Data for: Influence of nitrogen doping on the thermal stability of unbounded hydrogenated amorphous CN:H coating
DOI: 10.17632/hshgx3txxw
title: Data for: Metal skinning energy absorber for a backup marine fender system

description: These are supplementary data for 'Metal skinning energy absorber for a backup marine fender system' in Marine Structures. CSV files for force vs time.zip - Raw data for a numerical analysis Extra explicit dynamics at 45 degrees - To crosscheck the symmetry boundary conditions used for a quarter model.
DOI: 10.17632/jjzxvz4hfd
title: An event generator for interactions between hadrons and nuclei — FRITIOF version 7.0

description: Abstract FRITIOF is a Monte Carlo program that implements the Lund string dynamics model for hadron-hadron, hadron-nucleus and nucleus-nucleus collisions. This new version extends from the original low-P_Tconstructions to include hard scattering effects and a more refined treatment of the QCD gluon radiation in terms of a soft radiation model in the colour dipole approximation. This paper includes a brief presentation of the model and a description of the program. Title of program: FRITIOF version 7.0 Catalogue Id: ACHY_v1_0 Nature of problem In high energy hadron-hadron, hadron-nucleus and nucleus-nucleus collisions multi particle final states are produced. The bulk of the particles produced are at low PT. Strong interaction processes are generally non-perturbative and can not yet be fully understood in terms of quantum chromodynamics (QCD). As energy gets higher, some high-PT phenomena begin to appear in accordance with the perturbative calculations in QCD. The problem is to consistently connect the high PT Rutherford scattering an ... Versions of this program held in the CPC repository in Mendeley Data ACHY_v1_0; FRITIOF version 7.0; 10.1016/0010-4655(92)90082-A This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/vg5h9z29vg
title: Data for: Radiolarian and U-Pb zircon dating of Late Cretaceous and Paleogene Shimanto accretionary complexes, Southwest Japan: Temporal variations in provenance and offset across an out-of-sequence thrust

description: Zircon U–Pb isotopic data measured by LA–ICP–MS.
DOI: 10.17632/vm5d7vnftz
title: COVID-19 new cases and Google RSV in Taiwan

description: This dataset contains of Google RSV related to COVID-19 and COVID-19 new cases in Taiwan [December 5th, 2019 to February 8th, 2020]
DOI: 10.17632/y7z6s87nt2
title: A new version of the program to compute the asymptotic solution of coupled equations for electron scattering

description: Title of program: ASYM VERSION FOR ICL 1900 Catalogue Id: ACRK_v1_0 Nature of problem This is a new version of the program by Norcross (see CPC 1 (1969) 88). The program has been changed to conform with ASA Fortran and to become a compatible unit for use with the atomic scattering packages being run on the Queen's University ICL 1907 Versions of this program held in the CPC repository in Mendeley Data ACRK_v1_0; ASYM VERSION FOR ICL 1900; 10.1016/0010-4655(73)90078-7 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/74vjtg3tzr
title: Spectra for 208Pb(alpha, alpha') taken with the Q3D magnetic spectrograph at MLL Garching (Germany) in 1992

description: Spectra for 208Pb 208Pb(alpha, alpha') taken with E= 40.4 MeV with the Q3D magnetic spectrograph. The detector had five layers read out separately, an1 and an2 for anode-1 anode-2, cat1 and cat2 for cathode-1 cathode-2, foc for focal plane. The distance between the wires was about 10 cm - in between the focal plane. Strong peaks from contaminations of 12C and 16O were erased by inserting a metal foil before the detector. Original raw data roh_1992.tgz with listing in roh_1992.listing.pdf Data files in DAT_1992.tgz with listing in DAT_1992.listing.pdf In 2015 an essay was done to analyze some spectra by GASPAN. They are roughly calibrated by Nuclear Data Sheets 2007 Files needed for evaluation with GASPAN in GSPwork_2015.tgz Spectra fitted by GASPAN in EPS_aa2015.tgz with list in EPS_aa2015.listing.pdf Short protocol of data in protocol.aa1992
DOI: 10.17632/896p5frgg9
title: A new version of AAKF (Reduced Tensor Matrix Elements) adapted to spectroscopic notation

description: Abstract Title of program: REDUCED TENSOR MATRIX ELEMENTS 2 Catalogue number: AAKP Program obtainable from: CPC Program Library, Queen's University of Belfast N. Ireland (see application form in this issue) Computer: Installation: IBM 360/75 University of Waterloo, Waterloo, Ont. Canada Operating system: OS/360 HASP II Programming languages used: FORTRAN IV High speed store required: 102 K bytes No. of bits per byte: 8 Overlay structure: None Other peripherals used: Card reader, line printer No. of ca... Title of program: REDUCED TENSOR MATRIX ELEMENTS 2 Catalogue Id: AAKP_v1_0 Nature of problem This program is a revision of Robb's TENSOR program which enables one to calculate... CORRECTION SUMMARY: Vol:Year:Page 13:1977:231 "000A CORRECTION 12/04/77" "A new version of AAKF (reduced tensor matrix elements) adapted to spectroscopic notation. (C.P.C. 9(1975)370)." C.F. Fischer; K.M.S. Saxena ADAPTATION SUMMARY: Vol:Year:Page 13:1977:289 "0001 ADAPT TENSOR 2 FOR PRODUCT" "Adaptation of the new version of the reduced tensor matrix elements (AAKP) program: inclusion of the evaluation of matrix elements of tensor products." K.M.S. Saxena ADAPTATION SUMMARY: Vol:Year:Page 16:1978:57 "0002ADAPT TENSOR 2 TO CHECK DATA" "Adaptation of the new version of the reduced matrix elements (AAKP) program; inclusion of the checking of the input data." K.M.S. Saxena Note: adaptation instructions are contained in source code Note: correction instructions are contained in source code Versions of this program held in the CPC repository in Mendeley Data AAKP_v1_0; REDUCED TENSOR MATRIX ELEMENTS 2; 10.1016/0010-4655(75)90017-X This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/cmc2vjwvz9
title: Averaging of pseudoresonant T-matrix elements

description: Abstract A program designed to average over pseudoresonances and produce a physically accurate T-matrix element is presented. The pseudoresonant matrix element arises in variational calculations of intermediate energy electron and positron scattering by atoms and molecules. Only their averaged values have physical meaning. The program first removes the dominant pseudoresonant structure by convolution with a Lorentzian and then performs a least squares cubic spline fit to generate the physically smooth... Title of program: AVTMAT Catalogue Id: ACLH_v1_0 Nature of problem The extraction of the physically smooth T-matrix element from the unphysical pseudoresonant element resulting from an intermediate energy scattering calculation which includes L^2 functions in the modelling of the scattering wavefunction. Versions of this program held in the CPC repository in Mendeley Data ACLH_v1_0; AVTMAT; 10.1016/0010-4655(93)90096-U This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/kvxn774dps
title: Data for: Stochastic clonal expansion of “superstars” enhances the reserve capacity of enteric nervous system precursor cells.

description: Files of counts of cells in the enteric nervous system in normal growth and in CAM grafts.