cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8bt72
title: Data from: Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes

description: Hybridization is increasingly being recognized as a widespread process,
 even between ecologically and behaviorally divergent animal species.
 Determining phylogenetic relationships in the presence of hybridization
 remains a major challenge for evolutionary biologists, but advances in
 sequencing technology and phylogenetic techniques are beginning to address
 these challenges. Here we reconstruct evolutionary relationships among
 swordtails and platyfishes (Xiphophorus: Poeciliidae), a group of species
 characterized by remarkable morphological diversity and behavioral
 barriers to interspecific mating. Past attempts to reconstruct
 phylogenetic relationships within Xiphophorus have produced conflicting
 results. Since many of the 26 species in the genus are interfertile, these
 conflicts are likely due to hybridization. Using genomic data, we resolve
 a high-confidence species tree of Xiphophorus that accounts for both
 incomplete lineage sorting and hybridization. Our results allow us to
 re-examine a long-standing controversy about the evolution of the sexually
 selected sword in Xiphophorus, and demonstrate that hybridization has been
 strikingly widespread in the evolutionary history of this genus.
description: Archive containing
 output files and scripts used to generate these filesThis zip file contains
 output files and scripts used to generate those files from Cui et al.
 2013; Evolution. See README for description of file
 contents.Dryad.zip
DOI: 10.5061/dryad.bv24t
title: Data from: Migration routes and staging areas of trans-Saharan Turtle Doves appraised from light-level geolocators

description: The identification of migration routes, wintering grounds and stopover
 sites are crucial issues for the understanding of the Palearctic-African
 bird migration system as well as for the development of relevant
 conservation strategies for trans-Saharan migrants. Using miniaturized
 light-level geolocators we report a comprehensive and detailed year round
 track of a granivorous trans-Saharan migrant, the European Turtle Dove
 (Streptopelia turtur). From five recovered loggers, our data provide new
 insights on migratory journeys and winter destinations of Turtle Doves
 originating from a breeding population in Western France. Data confirm
 that Turtle Doves wintered in West Africa. The main wintering area
 encompassed Western Mali, the Inner Delta Niger and the Malian/Mauritanian
 border. Some individuals also extended their wintering ranges over North
 Guinea, North-West of Burkina Faso and the Ivory-Coast. Our results reveal
 that all individuals did not spend the winter period at a single location;
 some of them experienced a clear eastward shift of several hundred
 kilometres. We also found evidence for a loop migration pattern, with a
 post-breeding migration flyway lying west of the spring route. Finally, we
 found that on their way back to breeding grounds Turtle Doves needed to
 refuel after crossing the Sahara desert. Contrary to previous suggestions,
 our data reveal that birds used stopover sites for several weeks,
 presumably in Morocco and North Algeria. This later finding is a crucial
 issue for future conservation strategies because environmental conditions
 on these staging areas might play a pivotal role in population dynamics of
 this declining species.
description: Summary of
 capture-recapture dataCapture and Recapture
 Data.pdfChange_in_BodyConditionData for assessing the effect of loggers on change in body massLongitude dataThis file contains longitude data for each Turtle Dove tagged with a geolocator. A separate sheet is provided for each bird.Smoothed Longitude Data_Compilation for 5 Birds.xlsGIS_DataA Zip archive containing the GIS data used to assess migration routes, migration schedule and staging areas. All files are in Esri Shapefile format. Coordinates are in UTM31N and are derived from (twice-smoothed) coordinates calculated using the software BirdTracker.
DOI: 10.5061/dryad.hh74n
title: Data from: Linking the evolution of body shape and locomotor biomechanics in bird-line archosaurs

description: Locomotion in living birds (Neornithes) has two remarkable features:
 feather-assisted flight, and the use of unusually crouched hindlimbs for
 bipedal support and movement. When and how these defining functional
 traits evolved remains controversial. However, the advent of computer
 modelling approaches and the discoveries of exceptionally preserved key
 specimens now make it possible to use quantitative data on whole-body
 morphology to address the biomechanics underlying this issue. Here we use
 digital body reconstructions to quantify evolutionary trends in locomotor
 biomechanics (whole-body proportions and centre-of-mass position) across
 the clade Archosauria. We use three-dimensional digital reconstruction to
 estimate body shape from skeletal dimensions for 17 archosaurs along the
 ancestral bird line, including the exceptionally preserved, feathered taxa
 Microraptor, Archaeopteryx, Pengornis and Yixianornis, which represent key
 stages in the evolution of the avian body plan. Rather than a discrete
 transition from more-upright postures in the basal-most birds (Avialae)
 and their immediate outgroup deinonychosauria, our results support
 hypotheses of a gradual, stepwise acquisition of more-crouched limb
 postures across much of theropod evolution, although we find evidence of
 an accelerated change within the clade Maniraptora (birds and their
 closest relatives, such as deinonychosaurs). In addition, whereas
 reduction of the tail is widely accepted to be the primary morphological
 factor correlated with centre-of-mass position and, hence, evolution of
 hindlimb posture, we instead find that enlargement of the pectoral limb
 and several associated trends have a much stronger influence.
 Intriguingly, our support for the onset of accelerated morpho-functional
 trends within Maniraptora is closely correlated with the evolution of
 flight. Because we find that the evolution of enlarged forelimbs is
 strongly linked, via whole-body centre of mass, to hindlimb function
 during terrestrial locomotion, we suggest that the evolution of avian
 flight is linked to anatomical novelties in the pelvic limb as well as the
 pectoral.
description: CoMEstimationInstructionsInstructions for using the code and data hereCoM Estimation Code InstructionsWord '97 document version of code usage instructionsMass Segment objs.obj graphics files (data)- 3D body segment dimensions of archosaursCoM Calcuation CodeMatlab code for analyzing dataMesquite DataMesquite (Nexus) data files for phylogenetic analysis of evolutionary patterns in body dimensions. http://mesquiteproject.org/mesquite/mesquite.html for information on usage and free software download.
DOI: 10.5281/zenodo.18388365
title: DIVINE: Andalusia Agroclimatic Information Network Historic Datasets - SEVILLA - (June 24 - May 25)

description: This dataset contains high-resolution daily agroclimatic data from the RIA (Red de Información Agroclimática de Andalucía) network, managed by IFAPA. The data has been collected as part of the DIVINE project to support research in precision agriculture, water management, and climate adaptation in Southern Spain.

The dataset covers the period from June 1, 2024, to May 31, 2025, providing key parameters such as temperature (mean, max, min), humidity, wind speed, solar radiation, precipitation, and calculated ETo (Evapotranspiration) using the Penman-Monteith method.

Geographic Coverage and Station Distribution: The dataset includes part of the processed records from 123 monitoring stations distributed across the 8 provinces of Andalusia. In this case the data includes the ones in Sevilla:

Data Format:





Format: JSON (JavaScript Object Notation).




Naming Convention: 34 [Province_ID] [Station_ID] DIVINE [Station_Name] ([Province]).json




Coordinate System: WGS84 (included within the metadata of individual station files).



Source: Data retrieved from the official IFAPA RIAWS API (Junta de Andalucía).
DOI: 10.5281/zenodo.18388366
title: DIVINE: Andalusia Agroclimatic Information Network Historic Datasets - SEVILLA - (June 24 - May 25)

description: This dataset contains high-resolution daily agroclimatic data from the RIA (Red de Información Agroclimática de Andalucía) network, managed by IFAPA. The data has been collected as part of the DIVINE project to support research in precision agriculture, water management, and climate adaptation in Southern Spain.

The dataset covers the period from June 1, 2024, to May 31, 2025, providing key parameters such as temperature (mean, max, min), humidity, wind speed, solar radiation, precipitation, and calculated ETo (Evapotranspiration) using the Penman-Monteith method.

Geographic Coverage and Station Distribution: The dataset includes part of the processed records from 123 monitoring stations distributed across the 8 provinces of Andalusia. In this case the data includes the ones in Sevilla:

Data Format:





Format: JSON (JavaScript Object Notation).




Naming Convention: 34 [Province_ID] [Station_ID] DIVINE [Station_Name] ([Province]).json




Coordinate System: WGS84 (included within the metadata of individual station files).



Source: Data retrieved from the official IFAPA RIAWS API (Junta de Andalucía).
DOI: 10.5061/dryad.3vt0s
title: Data from: How do foragers decide when to leave a patch? A test of alternative models under natural and experimental conditions

description: 1. A forager’s optimal patch-departure time can be predicted by the
 prescient marginal value theorem (pMVT), which assumes they have perfect
 knowledge of the environment, or by approaches such as Bayesian-updating
 and learning rules, which avoid this assumption by allowing foragers to
 use recent experiences to inform their decisions. 2. In understanding and
 predicting broader scale ecological patterns, individual-level mechanisms,
 such as patch-departure decisions, need to be fully elucidated.
 Unfortunately, there are few empirical studies that compare the
 performance of patch-departure models that assume perfect knowledge with
 those that do not, resulting in a limited understanding of how foragers
 decide when to leave a patch. 3. We tested the patch-departure rules
 predicted by fixed-rule, pMVT, Bayesian-updating and learning models
 against one another, using patch residency times recorded from 54 chacma
 baboons (Papio ursinus) across two groups in natural (n = 6,594 patch
 visits) and field-experimental (n = 8,569) conditions. 4. We found greater
 support in the experiment for the model based on Bayesian-updating rules,
 but greater support for the model based on the pMVT in natural foraging
 conditions. This suggests that foragers may place more importance on
 recent experiences in predictable environments, like our experiment, where
 these experiences provide more reliable information about future
 opportunities.5. Furthermore, the effect of a single recent foraging
 experience on patch residency times was uniformly weak across both
 conditions. This suggests that foragers’ perception of their environment
 may incorporate many previous experiences, thus approximating the perfect
 knowledge assumed by the pMVT. Foragers may, therefore, optimise their
 patch-departure decisions in line with the pMVT through the adoption of
 rules similar to those predicted by Bayesian-updating.
description: Experimental patch
 visitsThe dataset of 8,569
 patch visits in a field experiment used in the analysis of patch-departure
 decisions in experimental conditions.Marshalletal2013-JAE-experimentdata.csvNatural patch visitsThe dataset of 6,175 patch visits used in the analysis of patch-departure decisions in natural conditions.Marshalletal2013-JAE-naturaldata.csvR code used in analysesThe R code used in the analysis of patch-departure decisionsMarshalletal2013-JAE-Rcode.txt
DOI: 10.5281/zenodo.18234719
title: Data for manuscript titled ``Quantum Hall correlations in tilted extended Bose-Hubbard chains"

description: Data for the accepted manuscript ``Quantum Hall correlations in tilted extended Bose-Hubbard chains" by Hrushikesh Sable, Subrata Das, and Vito Scarola, to appear in Physical Review A Letters. DOI: https://doi.org/10.1103/2w5f-bh3p

The files contain data of Figs. 2,3, 4 of the main text, and Fig. S1 - S4 in the supplemental.

The data for each figure is placed in the folders as described below:



Folder ``fig_2" contains following 4 data files. (a). density_com0.txt which has density profile in P = 0 dipole sector (fig. 2a left inset) (b). density_com8.txt which has density profile in P = 8 dipole sector (fig. 2a right inset) (c). excitation_hg_g_p8.txt which has excited state energies for H_g  (d). excitation_data_qh2d_ly6p6.txt which has excited state energies for H_QH 

Folder ``'fig_3" contains fig_3.dat which has the data for overlap heatmap 

Folder  ``fig_4" contains following 3 data files. (a). fig_4a.txt which has data for entanglement entropy for three different error strengths, eps = 0, 0.05 and 0.3, and analytical values.(b). fig_4b.txt which has data for bipartite fluctuations for three different error strengths, eps = 0, 0.05 and 0.3.(c). fig_4b_theory.txt which has analytical data for bipartite fluctuations.

 Folder ``fig_s1" contains following 2 data files.(a). fig_s1a.txt contains data for heatmap of ground state energy.(b) fig_s1b.txt contains data for charge excitation gap.

 Folder ``fig_s2" contains fig_s2.dat which has data for density-density correlations.

 Folder ``fig_s3" contains fig_s3.dat which has data for COM fluctuations for H_J and H_g.

Folder ``fig_s4" contains fig_s4.dat which has density at odd and even sites for ground state of H_g.
DOI: 10.5281/zenodo.18234720
title: Data for manuscript titled ``Quantum Hall correlations in tilted extended Bose-Hubbard chains"

description: Data for the accepted manuscript ``Quantum Hall correlations in tilted extended Bose-Hubbard chains" by Hrushikesh Sable, Subrata Das, and Vito Scarola, to appear in Physical Review A Letters. DOI: https://doi.org/10.1103/2w5f-bh3p

The files contain data of Figs. 2,3, 4 of the main text, and Fig. S1 - S4 in the supplemental.

The data for each figure is placed in the folders as described below:



Folder ``fig_2" contains following 4 data files. (a). density_com0.txt which has density profile in P = 0 dipole sector (fig. 2a left inset) (b). density_com8.txt which has density profile in P = 8 dipole sector (fig. 2a right inset) (c). excitation_hg_g_p8.txt which has excited state energies for H_g  (d). excitation_data_qh2d_ly6p6.txt which has excited state energies for H_QH 

Folder ``'fig_3" contains fig_3.dat which has the data for overlap heatmap 

Folder  ``fig_4" contains following 3 data files. (a). fig_4a.txt which has data for entanglement entropy for three different error strengths, eps = 0, 0.05 and 0.3, and analytical values.(b). fig_4b.txt which has data for bipartite fluctuations for three different error strengths, eps = 0, 0.05 and 0.3.(c). fig_4b_theory.txt which has analytical data for bipartite fluctuations.

 Folder ``fig_s1" contains following 2 data files.(a). fig_s1a.txt contains data for heatmap of ground state energy.(b) fig_s1b.txt contains data for charge excitation gap.

 Folder ``fig_s2" contains fig_s2.dat which has data for density-density correlations.

 Folder ``fig_s3" contains fig_s3.dat which has data for COM fluctuations for H_J and H_g.

Folder ``fig_s4" contains fig_s4.dat which has density at odd and even sites for ground state of H_g.
DOI: 10.3886/e244686
title: Market Entries and Exits and the Nonlinear Behaviour of the Exchange Rate Pass-Through into Import Prices

description: This paper develops an empirical framework giving rise to a nonlinear
behaviour of the exchange rate pass-through (ERPT). Rather than shifts between low
and high inflation, the nonlinearity arises when large swings in the exchange rate
trigger market entries and exits of foreign firms. Switching regressions are used to
distinguish between low and high pass-through regimes of the exchange rate into
import prices. For the case of Switzerland, the corresponding results suggest that,
though inflation has been low and stable, the ERPT still doubles in value in times of
a rapid appreciation of the Swiss Franc.
DOI: 10.3886/e244686v1
title: Market Entries and Exits and the Nonlinear Behaviour of the Exchange Rate Pass-Through into Import Prices

description: This paper develops an empirical framework giving rise to a nonlinear
behaviour of the exchange rate pass-through (ERPT). Rather than shifts between low
and high inflation, the nonlinearity arises when large swings in the exchange rate
trigger market entries and exits of foreign firms. Switching regressions are used to
distinguish between low and high pass-through regimes of the exchange rate into
import prices. For the case of Switzerland, the corresponding results suggest that,
though inflation has been low and stable, the ERPT still doubles in value in times of
a rapid appreciation of the Swiss Franc.
DOI: 10.5061/dryad.dc34q
title: Data from: Ecological opportunity and incumbency in the diversification of repeated continental colonizations by muroid rodents

description: Why some clades are more species-rich than others is a central question in
 macroevolution. Most hypotheses explaining exceptionally diverse clades
 involve the emergence of an ecological opportunity caused by a major
 biogeographic transition or evolution of a key innovation. The radiation
 of muroid rodents is an ideal model for testing theories of
 diversification rates in relation to biogeography and ecological
 opportunity because the group is exceptionally species-rich (comprising
 nearly one-third of all mammal species), it is ecologically diverse, and
 it has colonized every major landmass except New Zealand and Antarctica,
 thus providing multiple replicate radiations. We present an extension of
 the conventional ecological opportunity model to include a geographic
 incumbency effect, develop the largest muroid phylogeny to date, and use
 this phylogeny to test the new model. The nearly 300-species phylogeny
 based on four nuclear genes is robustly resolved throughout. Consistent
 with the fossil record, we identified Eurasia as the most likely origin of
 the group and reconstructed five to seven colonizations of Africa, five of
 North America, four of Southeast Asia, two of South America, two of Sahul,
 one of Madagascar, and eight to ten recolonizations of Eurasia. We
 accounted for incomplete taxon sampling by using multiple statistical
 methods and identified three corroborated regions of the tree with
 significant shifts in diversification rates. In several cases, higher
 rates were associated with the first colonization of a continental area,
 but most colonizations were not followed by bursts of speciation. We found
 strong evidence for diversification consistent with the ecological
 opportunity model (initial burst followed by density-dependent slowdown)
 in the first colonization of South America and partial support for this
 model in the first colonization of Sahul. Primary colonizers appear to
 inhibit the ultimate diversity of secondary colonizers, a pattern of
 incumbency that is consistent with ecological opportunity, but they did
 not inhibit initial diversification rates of secondary colonizers. These
 results indicate that ecological opportunity may be a general but weak
 process in muroids and one that requires specific circumstances to lead to
 an adaptive radiation. The total land area, length of time between
 colonizations, and rank of colonizations did not influence the
 diversification rates of primary colonizers. Models currently employed to
 test ecological opportunity do a poor job of explaining muroid diversity.
 In addition, the various rate-shift metrics identified different clades,
 suggesting that caution should be used when only one is applied, and we
 discuss which methods are most appropriate to address different questions
 of diversification.
description: SupplementBRCA1.300BRCA1 alignment in nexus formatGHR.300GHR alignment in nexus formatIRBP.300IRBP alignment in nexus formatRAG1.300RAG1 alignment in nexus format
DOI: 10.5061/dryad.4s6g0
title: Data from: The impact of paternity on male-infant association in a primate with low paternity certainty

description: In multimale groups where females mate promiscuously, male–infant
 associations have rarely been studied. However, recent studies have shown
 that males selectively support their offspring during agonistic conflicts
 with other juveniles and that father's presence accelerates offspring
 maturation. Furthermore, it was shown that males invest in unrelated
 infants to enhance future mating success with the infant's mother.
 Hence, infant care might provide fitness gain for males. Here, we
 investigate male–infant associations in rhesus macaques (Macaca mulatta),
 a primate with low paternity certainty as females mate with multiple
 partners and males ensure paternity less efficiently through
 mate-guarding. We combined behavioural data with genetic paternity
 analyses of one cohort of the semi-free-ranging population of Cayo
 Santiago (Puerto Rico) and recorded affiliative and aggressive
 interactions between focal subjects and adult males from birth to sexual
 maturation (0–4 years) of focal subjects. Our results revealed that 9.6%
 of all interactions of focal subjects involved an adult male and 94% of
 all male–infant interactions were affiliative, indicating the rareness of
 male–infant aggression. Second and most interestingly, sires were more
 likely to affiliate with their offspring than nonsires with unrelated
 infants. This preference was independent of mother's proximity and
 emphasized during early infancy. Male–infant affiliation rose with infant
 age and was pronounced between adult males and male rather than female
 focal subjects. Overall, our results suggest that male–infant affiliation
 is also an important component in structuring primate societies and
 affiliation directed towards own offspring presumably represent low-cost
 paternal care.
description: Langos et
 alData collected in the
 field transferred into R (Program) further information see ReadMe
 file.Langos et al
 genotypesGenotypes for focals and
 sires. First row gives header for several columns. including ID =
 identities of animals; e.g. D2s367 names of markers