cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4667959.v1
title: Detecting RNA base methylations in single cells by in situ hybridization (datasets)

description: All imaging data used to produce the main text figures and supplementary figures, as well as Excel source data for main text figures. Analysis software is available at: https://github.com/kganzinger/Analysis-Software-for-in-situ-hybridization-data-in-single-cells
DOI: 10.6084/m9.figshare.4667884
title: WeichselbaumLederAnsorge_Data.xlsx

description: The xlsx.-File comprises three data worksheets: the data of the expertise questionnaire, the explicit rating scale, and the Implicit Association Test. <br><br>
DOI: 10.6084/m9.figshare.4667848
title: Jupyter Notebooks from the DevoWorm Project

description: Jupyter Notebooks from the DevoWorm Project, release 1.0.
DOI: 10.6084/m9.figshare.4667884.v1
title: WeichselbaumLederAnsorge_Data.xlsx

description: The xlsx.-File comprises three data worksheets: the data of the expertise questionnaire, the explicit rating scale, and the Implicit Association Test. <br><br>
DOI: 10.6084/m9.figshare.4667848.v1
title: Jupyter Notebooks from the DevoWorm Project

description: Jupyter Notebooks from the DevoWorm Project, release 1.0.
DOI: 10.6084/m9.figshare.4667746
title: Data for Fe2O3 nanomaterials from an iron (II) diketonate – diamino complex

description: Data for paper: Beta-Fe2O3 nanomaterials from an iron (II) diketonate – diamino complex: a study from molecular precursor to growth processpublished in:Dalton Trans., 2012,41, 149-155DOI: http://dx.doi.org/10.1039/c1dt11342awhich should be cited to refer to this work<br>short explanation at: https://goo.gl/jauqwy
DOI: 10.6084/m9.figshare.4667737
title: Data from: Why mistletoes are more aggregated in disturbed forests? The role of differential host mortality

description: Original dataset from Fonturbel et al. (2017) Why mistletoes are more aggregated in disturbed forests? The role of differential host mortality. Forest Ecology and Management, doi: 10.1016/j.foreco.2017.03.028
DOI: 10.6084/m9.figshare.4667737.v1
title: Data from: Why mistletoes are more aggregated in disturbed forests? The role of differential host mortality

description: Original dataset from Fonturbel et al. (2017) Why mistletoes are more aggregated in disturbed forests? The role of differential host mortality. Forest Ecology and Management, doi: 10.1016/j.foreco.2017.03.028
DOI: 10.6084/m9.figshare.4667746.v1
title: Data for Fe2O3 complex

description: Data for paper: Beta-Fe2O3 nanomaterials from an iron (II) diketonate – diamino complex: a study from molecular precursor to growth processpublished in:Dalton Trans., 2012,41, 149-155DOI: http://dx.doi.org/10.1039/c1dt11342awhich should be cited to refer to this work<br>short explanation at: https://goo.gl/jauqwy
DOI: 10.6084/m9.figshare.4667377
title: Free software file coauthorship graphs

description: Graph data belonging to several open source projects hosted on GitHub: alacritty, beehive, ggplot2, language-perl6fe, mocha, rakudo, redash, scalatra and TensorFlow<br>Nodes are developers, edges join them if they have worked on the same file. The files include also betweenness data. http://rpubs.com/jjmerelo/beehive-graph<br>
DOI: 10.6084/m9.figshare.4667377.v1
title: Free software file coauthorship graphs

description: Graph data belonging to several open source projects hosted on GitHub: alacritty, beehive, ggplot2, language-perl6fe, mocha, rakudo, redash, scalatra and TensorFlow<br>Nodes are developers, edges join them if they have worked on the same file. The files include also betweenness data. http://rpubs.com/jjmerelo/beehive-graph<br>
DOI: 10.17028/rd.lboro.4665493
title: 3D-printed planar graded index lenses-simulation files

description: This file is the CST simulation file of the GRIN lens that fed by a X-band waveguide.The paper is open access and freely available:http://ieeexplore.ieee.org/document/7637125/<br>
DOI: 10.17028/rd.lboro.4665493.v1
title: 3D-printed planar graded index lenses-simulation files

description: This file is the CST simulation file of the GRIN lens that fed by a X-band waveguide.The paper is open access and freely available:http://ieeexplore.ieee.org/document/7637125/<br>
DOI: 10.6084/m9.figshare.4665451
title: Piedra-RSVgeneCNcorr_data-public registry.xls

description: Clinical, physiological, and molecular biological data from infants admitted to emergency department (ED) with physician-diagnosed bronchiolitis and positive for RSV.<br><br>Nasal wash samples collected (one from each infant) and analyzed for 1) RSV gene copy numbers (genes NS1, NS2, N, G, F) and host RNase P copy number by qPCR, 2) cytokine levels by multiplex human cytokine assay, and 3) biomarker levels (caspase, LDH, MMP-7, MPO) by specific assay kits.<br><br>Infants were enrolled in study after obtaining written informed consent from a parent or legal guardian, and met all the inclusion criteria and none of the exclusion criteria. The inclusion criteria were the child was previously healthy and had a physician diagnosis of bronchiolitis in the ED. The exclusion criteria were co-morbid medical conditions such as chronic lung disease, cyanotic congenital heart disease, neuromuscular disease, a primary immunodeficiency, prematurity (&lt;36 weeks) or had respiratory distress unrelated to a viral URI. This study was approved by the Institutional Review Board (IRB) of Human Subject Research at Baylor College of Medicine and Affiliated Institutions which includes Texas’s Children Hospital. The IRB is registered with the Office for Human Research Protections of the U.S. Department of Health and Human Services. All personal identifying information have been removed from the data set. <br>
DOI: 10.17028/rd.lboro.4665448
title: Non-uniform Mesh for Embroidered Microstrip Antennas - Simulation files

description: The fileset contains simulation files of the non-uniform meshed patch antennas (using FDTD Empire XCcel). The conductor thickness and conductivity can be adjusted according to the conductive threads.<br>
DOI: 10.6084/m9.figshare.4665337
title: Antifungal bacteria on woodland salamander skin exhibit high taxonomic diversity and geographic variability

description: <b>Metadata for each anti-Bd bacteria: </b>(AntiBdBac_meta_final.csv) File contains information for each bacterial isolate identified as anti-Bd. Metadata includes inhibition score, visual observation inhibition score, locality and salamander information, OTU designation, taxonomic assignment, pairwise alignment value to Woodhams et al. (2015) database, and the consensus sequence (also deposited in Genbank).<br><b>Anti-Bd bacterial richness with metadata:</b> (Richness_anti-BdBac.csv) The file includes salamander ID number and all metadata used in the statistical analyses specified in the paper: "To determine if the number of anti-Bd bacteria per salamander was related to host or environmental characteristics, we used a generalized linear mixed-effects model (GLMM) with a binomial distribution in the R package ‘lme4’. We included species and locality as the main explanatory variables, along with additional covariates of host (sex, body condition, cover object) and site (leaf litter depth, soil pH, substrate temperature). As the response variable, we used proportion of anti-Bd bacteria per salamander (i.e., total anti-Bd bacteria divided by total bacteria isolated) to account for variation in the number of isolates cultured per individual."<br><b>Sequence alignment of 119 anti-Bd bacterial isolates: </b>(119_RDP_alignment_FINAL.fa) As specified in the paper: "We aligned the bacterial isolate sequences using the Ribosomal Database Project’s (http://rdp.cme.msu.edu) alignment tools following Dunitz et al. (2015)." The alignment was used to build the phylogenetic tree presented in Figure 1.<br><br>
DOI: 10.6084/m9.figshare.4665301
title: PLoS ONE Syringe Pressure Pump Figue Data

description: Openly available figure data for syringe pressure pump PLoS ONE manuscript submission.
DOI: 10.6084/m9.figshare.4665337.v1
title: Antifungal bacteria on woodland salamander skin exhibit high taxonomic diversity and geographic variability

description: <b>Metadata for each anti-Bd bacteria: </b>(AntiBdBac_meta_final.csv) File contains information for each bacterial isolate identified as anti-Bd. Metadata includes inhibition score, visual observation inhibition score, locality and salamander information, OTU designation, taxonomic assignment, pairwise alignment value to Woodhams et al. (2015) database, and the consensus sequence (also deposited in Genbank).<br><b>Anti-Bd bacterial richness with metadata:</b> (Richness_anti-BdBac.csv) The file includes salamander ID number and all metadata used in the statistical analyses specified in the paper: "To determine if the number of anti-Bd bacteria per salamander was related to host or environmental characteristics, we used a generalized linear mixed-effects model (GLMM) with a binomial distribution in the R package ‘lme4’. We included species and locality as the main explanatory variables, along with additional covariates of host (sex, body condition, cover object) and site (leaf litter depth, soil pH, substrate temperature). As the response variable, we used proportion of anti-Bd bacteria per salamander (i.e., total anti-Bd bacteria divided by total bacteria isolated) to account for variation in the number of isolates cultured per individual."<br><b>Sequence alignment of 119 anti-Bd bacterial isolates: </b>(119_RDP_alignment_FINAL.fa) As specified in the paper: "We aligned the bacterial isolate sequences using the Ribosomal Database Project’s (http://rdp.cme.msu.edu) alignment tools following Dunitz et al. (2015)." The alignment was used to build the phylogenetic tree presented in Figure 1.<br><br>
DOI: 10.6084/m9.figshare.4665235
title: Rethinking the History of Common Walnut (Juglans regia L.) inEurope: its Origins and Human Interactions

description: Geographic coordinates and SSR genetic data for 91 common walnut populations sampled in Eurasia.
DOI: 10.6084/m9.figshare.4665109
title: EPA Comptox Chemistry Dashboard "MS-Ready" File of Structures

description: The EPA CompTox Chemistry Dashboard (at https://comptox.epa.gov) can be used by mass spectrometrists for the purpose of structure identification. A normal formula search would search the exact formula associated with any chemical, whether it include solvents of hydration, salts or multiple components. However, mass spectrometry detects ionized chemical structures and molecular formulae searches should be based on desalted, and desolvated structures with stereochemistry removed. We refer to these as “MS ready structures” and the MS-ready mappings are delivered as Excel Spreadsheets containing the Preferred Name, CAS-RN. DTXSID, Formula, Formula of the MS-ready structure and associated masses, SMILES and InChI Strings/Keys.
DOI: 10.6084/m9.figshare.4665061
title: Bathymetry of the Adriatic Sea The legacy of the last eustatic cycle and the impact of modern sediment dispersal

description: The Istituto di Scienze Marine (ISMAR-CNR) has conducted several research projects on the Italian side of the Adriatic Sea over more than 15 years, collecting bathymetric, geophysical and sediment core data to perform multidisciplinary studies of modern sediment dynamics and of past environmental changes during the last eustatic cycle. A crucial step in this direction was the construction of a detailed bathymetry, a time-consuming task due to the extensive shallow water portion of the basin. Given the setting of the Adriatic Sea and the long-lasting research effort, the bathymetric map is necessarily based on heterogeneous data with uneven spatial distribution of Single-Beam echo-soundings. The main objective of this work is to illustrate the methodology applied to compile the bathymetric map of the west side of the Adriatic Sea at basin scale (1:750,000) and to describe the main morphological units that characterise the seafloor and reflect its main geological features. This bathymetry can also be used in oceanographic modelling both at regional and local scale, focussing on the interaction between bottom currents and seafloor morphology.<br>
DOI: 10.6084/m9.figshare.4665109.v1
title: EPA Comptox Chemistry Dashboard "MS-Ready" File of Structures

description: The EPA CompTox Chemistry Dashboard (at https://comptox.epa.gov) can be used by mass spectrometrists for the purpose of structure identification. A normal formula search would search the exact formula associated with any chemical, whether it include solvents of hydration, salts or multiple components. However, mass spectrometry detects ionized chemical structures and molecular formulae searches should be based on desalted, and desolvated structures with stereochemistry removed. We refer to these as “MS ready structures” and the MS-ready mappings are delivered as Excel Spreadsheets containing the Preferred Name, CAS-RN. DTXSID, Formula, Formula of the MS-ready structure and associated masses, SMILES and InChI Strings/Keys.
DOI: 10.6084/m9.figshare.4665046
title: Supplementary Material for: The Central Nervous System of Jawless Vertebrates: Encephalization in Lampreys and Hagfishes

description: Lampreys and hagfishes are the sole surviving representatives of the early agnathan (jawless) stage in vertebrate evolution, which has previously been regarded as the least encephalized group of all vertebrates. Very little is known, however, about the extent of interspecific variation in relative brain size in these fishes, as previous studies have focused on only a few species, even though lampreys exhibit a variety of life history traits. While some species are parasitic as adults, with varying feeding behaviors, others (nonparasitic species) do not feed after completing their macrophagous freshwater larval phase. In addition, some parasitic species remain in freshwater, while others undergo an anadromous migration. On the basis of data for postmetamorphic individuals representing approximately 40% of all lamprey species, with representatives from each of the three families, the aforementioned differences in life history traits are reflected in variations in relative brain size. Across all lampreys, brain mass increases with body mass with a scaling factor or slope (α) of 0.35, which is less than those calculated for different groups of gnathostomatous (jawed) vertebrates (α = 0.43-0.62). When parasitic and nonparasitic species are analyzed separately, with phylogeny taken into account, the scaling factors of both groups (parasitic α = 0.43, nonparasitic α = 0.45) approach those of gnathostomes. The relative brain size in fully grown adults of parasitic species is, however, less than that of the adults of nonparasitic species, paralleling differences between fully grown adults and recently metamorphosed individuals of anadromous species. The average degree of encephalization is found in anadromous parasitic lampreys and might thus represent the ancestral condition for extant lampreys. These results suggest that the degree of encephalization in lampreys varies according to both life history traits and phylogenetic relationships.
DOI: 10.6084/m9.figshare.4665040
title: Space Weather: Origins and Impacts

description: Public talk about space weather given to the Irish Meteorological Society in Custom House, Dublin, on 2017 February 16.<br>
DOI: 10.6084/m9.figshare.4665043
title: gamma models resolution 10 for PRL

description: gamma models resolution 10 for PRL
DOI: 10.6084/m9.figshare.4665046.v1
title: Supplementary Material for: The Central Nervous System of Jawless Vertebrates: Encephalization in Lampreys and Hagfishes

description: Lampreys and hagfishes are the sole surviving representatives of the early agnathan (jawless) stage in vertebrate evolution, which has previously been regarded as the least encephalized group of all vertebrates. Very little is known, however, about the extent of interspecific variation in relative brain size in these fishes, as previous studies have focused on only a few species, even though lampreys exhibit a variety of life history traits. While some species are parasitic as adults, with varying feeding behaviors, others (nonparasitic species) do not feed after completing their macrophagous freshwater larval phase. In addition, some parasitic species remain in freshwater, while others undergo an anadromous migration. On the basis of data for postmetamorphic individuals representing approximately 40% of all lamprey species, with representatives from each of the three families, the aforementioned differences in life history traits are reflected in variations in relative brain size. Across all lampreys, brain mass increases with body mass with a scaling factor or slope (α) of 0.35, which is less than those calculated for different groups of gnathostomatous (jawed) vertebrates (α = 0.43-0.62). When parasitic and nonparasitic species are analyzed separately, with phylogeny taken into account, the scaling factors of both groups (parasitic α = 0.43, nonparasitic α = 0.45) approach those of gnathostomes. The relative brain size in fully grown adults of parasitic species is, however, less than that of the adults of nonparasitic species, paralleling differences between fully grown adults and recently metamorphosed individuals of anadromous species. The average degree of encephalization is found in anadromous parasitic lampreys and might thus represent the ancestral condition for extant lampreys. These results suggest that the degree of encephalization in lampreys varies according to both life history traits and phylogenetic relationships.
DOI: 10.6084/m9.figshare.4665040.v1
title: Space Weather: Origins and Impacts

description: Public talk about space weather given to the Irish Meteorological Society in Custom House, Dublin, on 2017 February 16.<br>
DOI: 10.6084/m9.figshare.4665043.v1
title: gamma models resolution 10 for PRL

description: gamma models resolution 10 for PRL
DOI: 10.6084/m9.figshare.4665022
title: Supplementary Material for: Impact of Renal Disease on Patients with Hepatitis C: A Retrospective Analysis of Disease Burden, Clinical Outcomes, and Health Care Utilization and Cost

description: <b><i>Background/Aims:</i></b> Few studies explore the magnitude of the disease burden and health care utilization imposed by renal disease among patients with hepatitis C virus (HCV). We aimed to describe the characteristics, outcomes, and health care utilization and costs of patients with HCV with and without renal impairment. <b><i>Methods:</i></b> This retrospective analysis used 2 administrative claims databases: the US commercially insured population in Truven Health MarketScan® data (aged 20-64 years), and the US Medicare fee-for-service population in the Medicare 20% sample (aged ≥65 years). Baseline characteristics and comorbid conditions were identified from claims during 2011; patients were followed for up to 1 year (beginning January 1, 2012) to identify health outcomes of interest and health care utilization and costs. <b><i>Results:</i></b> In the MarketScan and Medicare databases, 35,965 and 10,608 patients with HCV were identified, 8.5 and 26.5% with evidence of renal disease (chronic kidney disease [CKD] or end-stage renal disease [ESRD]). Most comorbid conditions and unadjusted outcome rates increased across groups from patients with no evidence of renal disease to non-ESRD CKD to ESRD. Health care utilization followed a similar pattern, as did the costs. <b><i>Conclusions:</i></b> Our findings suggest that HCV patients with concurrent renal disease have significantly more comorbidity, a higher likelihood of negative health outcomes, and higher health care utilization and costs.
DOI: 10.6084/m9.figshare.4665022.v1
title: Supplementary Material for: Impact of Renal Disease on Patients with Hepatitis C: A Retrospective Analysis of Disease Burden, Clinical Outcomes, and Health Care Utilization and Cost

description: <b><i>Background/Aims:</i></b> Few studies explore the magnitude of the disease burden and health care utilization imposed by renal disease among patients with hepatitis C virus (HCV). We aimed to describe the characteristics, outcomes, and health care utilization and costs of patients with HCV with and without renal impairment. <b><i>Methods:</i></b> This retrospective analysis used 2 administrative claims databases: the US commercially insured population in Truven Health MarketScan® data (aged 20-64 years), and the US Medicare fee-for-service population in the Medicare 20% sample (aged ≥65 years). Baseline characteristics and comorbid conditions were identified from claims during 2011; patients were followed for up to 1 year (beginning January 1, 2012) to identify health outcomes of interest and health care utilization and costs. <b><i>Results:</i></b> In the MarketScan and Medicare databases, 35,965 and 10,608 patients with HCV were identified, 8.5 and 26.5% with evidence of renal disease (chronic kidney disease [CKD] or end-stage renal disease [ESRD]). Most comorbid conditions and unadjusted outcome rates increased across groups from patients with no evidence of renal disease to non-ESRD CKD to ESRD. Health care utilization followed a similar pattern, as did the costs. <b><i>Conclusions:</i></b> Our findings suggest that HCV patients with concurrent renal disease have significantly more comorbidity, a higher likelihood of negative health outcomes, and higher health care utilization and costs.
DOI: 10.6084/m9.figshare.4664965
title: Transcriptome Analysis of Rooted Chichi in Ginkgo biloba L.

description: Transcriptome Analysis of Rooted Chichi in <i>Ginkgo biloba</i> L.
DOI: 10.6084/m9.figshare.4664965.v1
title: Transcriptome Analysis of Rooted Chichi in Ginkgo biloba L.

description: Transcriptome Analysis of Rooted Chichi in <i>Ginkgo biloba</i> L.
DOI: 10.6084/m9.figshare.4664308
title: 压缩Unigene,T mairei南方红豆杉.zip

description: We performed the de novo assembly of Taxus mairei transcriptome using Illumina paired-end sequencing technology. In a single run, we produced 13,737,528 sequencing reads corresponding to 2.03 Gb total nucleotides. These reads were assembled into 36,493 unique sequences.
DOI: 10.17632/pwnnwczs2k.1
title: datas_GestaoEstoques

description: Below, There is five files: The first one presents the calculation for the accuracy of the itens. Second one presents the calculation of the turnover and coverage of stock items; third one ABC curve; fourth file Ishikawa; and, finally, fifth detected problems.
DOI: 10.6084/m9.figshare.4664002
title: Sampling locations and microsatellite genotypes of Cinnamomum camphora in East Asia.xlsx

description: Sampling locations, microsatellite genotypes at 11 loci, and diameter at breast height of 804 Cinnamomum camphora genets collected at Japan, China and Taiwan. The results of the STRUCTURE analysis were also shown.
DOI: 10.6084/m9.figshare.4664002.v1
title: Sampling locations and microsatellite genotypes of Cinnamomum camphora in East Asia.xlsx

description: Sampling locations, microsatellite genotypes at 11 loci, and diameter at breast height of 804 Cinnamomum camphora genets collected at Japan, China and Taiwan. The results of the STRUCTURE analysis were also shown.
DOI: 10.6084/m9.figshare.4663993
title: Control of the mixing time in vessels agitated by submerged recirculating jets

description: Raw dataset for control of the mixing time in vessels agitated by submerged recirculating jets<br>
DOI: 10.17632/4vzpx255mt.1
title: Supplement to: "A case series of a rare diagnostic entity: Broadspectrum Abnormal Localised Photosensitivity Syndrome"

description: Supplementary material to: "A case series of a rare diagnostic entity: Broadspectrum Abnormal Localised Photosensitivity Syndrome"