cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15539721
title: Chromosome-level genome assembly of Triticum turgidum var 'Kronos' additional datasets

description: This data is made available under the Toronto Agreement. 

All of the data listed here is available under the prepublication data sharing principle of the Toronto agreement (1). By using this data, you agree to:



respect the rights of the data producers and contributors to analyze and publish the first global analyses and certain other reserved analyses of this data set in a peer-reviewed publication.

not redistribute, release, or otherwise provide access to the data to anyone outside of the group, until the data has been published & submitted to the public data repositories.

contact the authors to discuss any plans to publish data or analyses that utilize this data to avoid the overlap of any planned analyses.

fully cite the prepublication data along with any applicable versioning details.

understand that this data as accessed is precompetitive and is not patentable in its present state.


This agreement does not expire by time but only upon publication of the first global analysis by the data producers and contributors.(1) Toronto International Data Release Workshop Authors. Prepublication data sharing. Nature 461, 168–170 (2009). https://doi.org/10.1038/461168a

 



If you have questions about the use of this dataset, please contact Ksenia Krasileva: kseniak [at] berkeley.edu


 

Updates in Zenodo v2This update includes the manually curated intracellular immune receptor sequences integrated into the annotation v2.1. In total, 2,328 genes were curated. Only high and medium-confidence gene models were included into the annotation v2.1. Low-confidence models are included in the dataset in this reposritory. Each sequence has fields composed of class, confidence, description and primary. Class indicates two-category annotations assigned for each gene based on multi-domain architecture and homology, confidence corresponds to the final model confidence, primary denotes the primary transcript (ends with .1) for each gene, and description contains notes recorded during manual curation. 

 

Acknowledgement

This work has been funded by the United States Department of Agriculture - National Institute for Food and Agriculture Award (2021-67013-35726). Please, feel free to reach out to us regarding this datasets
DOI: 10.17632/b343wjtgyk.1
title: Data for "“We don’t Report for Fear of Losing our Position”: The Consequences to and Reactions of Women Victims of Sexual Harassment in the Brazilian Organizations" published by BAR - Brazilian Administration Review

description: Transcription of the interviews.
DOI: 10.17632/mmyp4rzrnf
title: Maximum bulk density of Brazilian agricultural soils from the Proctor comapction test

description: Data on soil maximum buylk density from the Proctor compaction test, soil texture (clay, sil and sand contents), soil organic carbon and bulk density for Brazilian soils taken from peer-reviewd scientific papers.
Metadata:
citation reference citation
country country of origin of the data point
suborder soil suborder according to the Brazilian System for Soil Classification
landuse current landuse on the sampling site
depth smapling depth
CLAY clay content in g/kg
SILT silt content in g/kg
SAND sand content in g/kg
SOC soil organic carbon content in g/kg
Db soil bulk density in g/cm³
Dbmax maximum bulk density in g/cm³ from the Proctor compaction test
reference original reference from which the data was retrieved
DOI: 10.17632/mmyp4rzrnf.1
title: Maximum bulk density of Brazilian agricultural soils from the Proctor comapction test

description: Data on soil maximum buylk density from the Proctor compaction test, soil texture (clay, sil and sand contents), soil organic carbon and bulk density for Brazilian soils taken from peer-reviewd scientific papers.
Metadata:
citation reference citation
country country of origin of the data point
suborder soil suborder according to the Brazilian System for Soil Classification
landuse current landuse on the sampling site
depth smapling depth
CLAY clay content in g/kg
SILT silt content in g/kg
SAND sand content in g/kg
SOC soil organic carbon content in g/kg
Db soil bulk density in g/cm³
Dbmax maximum bulk density in g/cm³ from the Proctor compaction test
reference original reference from which the data was retrieved
DOI: 10.17632/6bmbf33nnw.1
title: Multilabeled Bengali Sentiment and Emotion Classification Dataset

description: This dataset, titled Multilabeled Sentiment and Emotion Classification Dataset, is developed to advance natural language processing (NLP) research in the Bengali language, particularly in the domains of sentiment analysis and emotion detection. It contains 40,811 entries of user-generated text from Bengali social media and comment sections, each annotated with two labels: one for sentiment and another for emotion.

Sentiment Categories:
The dataset is annotated with five sentiment classes:

Very Negative – 8,979 entries (21.9%)

Negative – 10,757 entries (26.3%)

Neutral – 8,662 entries (21.2%)

Positive – 7,186 entries (17.8%)

Very Positive – 5,227 entries (12.8%)

This distribution highlights a larger presence of negative and neutral sentiments, indicating a critical tone in the source data.

Emotion Categories:
There are seven emotion classes in the dataset:

Happy – 8,154 entries (19.9%)

Surprised – 3,470 entries (8.5%)

Sexual – 7,250 entries (17.7%)

Religious – 2,449 entries (6.0%)

Calm – 7,583 entries (18.5%)

Hateful – 4,919 entries (12.0%)

Fearful – 7,086 entries (17.3%)

This emotion distribution reveals that Happy, Calm, and Sexual emotions are among the most prevalent, while Religious and Surprised emotions are relatively less represented.

Applications:
This dataset is suitable for training and evaluating machine learning and deep learning models for tasks such as:

Multilabel text classification

Emotion recognition

Sentiment analysis

Hate speech and toxic comment detection in the Bengali language

Language:
Bengali (Bangla)
DOI: 10.17632/6bmbf33nnw.2
title: Multilabeled Bengali Sentiment and Emotion Classification Dataset

description: This dataset, titled Multilabeled Sentiment and Emotion Classification Dataset, is developed to advance natural language processing (NLP) research in the Bengali language, particularly in the domains of sentiment analysis and emotion detection. It contains 40,811 entries of user-generated text from Bengali social media and comment sections, each annotated with two labels: one for sentiment and another for emotion.

Sentiment Categories:
The dataset is annotated with five sentiment classes:

Very Negative – 8,979 entries (21.9%)

Negative – 10,757 entries (26.3%)

Neutral – 8,662 entries (21.2%)

Positive – 7,186 entries (17.8%)

Very Positive – 5,227 entries (12.8%)

This distribution highlights a larger presence of negative and neutral sentiments, indicating a critical tone in the source data.

Emotion Categories:
There are seven emotion classes in the dataset:

Happy – 8,154 entries (19.9%)

Surprised – 3,470 entries (8.5%)

Sexual – 7,250 entries (17.7%)

Religious – 2,449 entries (6.0%)

Calm – 7,583 entries (18.5%)

Hateful – 4,919 entries (12.0%)

Fearful – 7,086 entries (17.3%)

This emotion distribution reveals that Happy, Calm, and Sexual emotions are among the most prevalent, while Religious and Surprised emotions are relatively less represented.

Applications:
This dataset is suitable for training and evaluating machine learning and deep learning models for tasks such as:

Multilabel text classification

Emotion recognition

Sentiment analysis

Hate speech and toxic comment detection in the Bengali language

Language:
Bengali (Bangla)
DOI: 10.15468/dl.9whfq2
title: Occurrence Download

description: A dataset containing 9482 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stachytarpheta jamaicensis (L.) Vahl"
 ]
}

 The dataset includes 9482 records from 337 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005872-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6eqqtq
title: Occurrence Download

description: A dataset containing 617 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cacatua ophthalmica)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 617 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084435-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnscpv
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonicera subaequalis"
 ]
}

 The dataset includes 78 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084436-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e231362
title: Replication data for: Competition, Markups, and the Gains from International Trade

description: We study the procompetitive gains from international trade in a quantitative model with endogenously variable markups. We find that trade can significantly reduce markup distortions if two conditions are satisfied: (i) there is extensive misallocation, and (ii) opening to trade exposes hitherto dominant producers to greater competitive pressure. We measure the extent to which these two conditions are satisfied in Taiwanese producer-level data. Versions of our model consistent with the Taiwanese data predict that opening up to trade strongly increases competition and reduces markup distortions by up to one-half, thus significantly reducing productivity losses due to misallocation. (JEL D43, F12, F14, L13, L60, O47)
DOI: 10.3886/e231362v1
title: Replication data for: Competition, Markups, and the Gains from International Trade

description: We study the procompetitive gains from international trade in a quantitative model with endogenously variable markups. We find that trade can significantly reduce markup distortions if two conditions are satisfied: (i) there is extensive misallocation, and (ii) opening to trade exposes hitherto dominant producers to greater competitive pressure. We measure the extent to which these two conditions are satisfied in Taiwanese producer-level data. Versions of our model consistent with the Taiwanese data predict that opening up to trade strongly increases competition and reduces markup distortions by up to one-half, thus significantly reducing productivity losses due to misallocation. (JEL D43, F12, F14, L13, L60, O47)
DOI: 10.3535/qsh-jv1-3xg
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t3f-0bk-yex
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hjj-tet-261
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/71l-bcl-tq5
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j3l-r0c-z9h
title: Clematicissus striata subsp. striata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4jd-jfr-9ne
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w85-khg-h3p
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/enx-zry-x63
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jny-vsn-1ye
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q8y-b9a-38g
title: Odontosoria gracilis (Tagawa) Ralf Knapp

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wwg-s2w-8hp
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aes-nyt-bat
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mva-z7w-sdd
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c8d-8xq-z71
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l1q-hcm-n8g
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kly-7m9-ldf
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mcs-asn-y3p
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1t9-q7c-das
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8qd-ae8-f39
title: †Carbonicola McCoy, 1855

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cqz-s7p-kr9
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jzl-ql4-rty
title: Eponides Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7pm-14b-vd1
title: Gluta L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vn9-6mx-888
title: Phyllolepidum Trinajstic

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jyy-2ks-hmf
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zt8-2by-5ze
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kk9-3bz-4kc
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vfz-5q9-wj3
title: Zelkova Spach

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xgm-zz9-1hj
title: Platanus L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lqv-b2e-ts9
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y1r-edk-z84
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hyd-p2d-b31
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5sb-m30-ns9
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/90l-h99-jwv
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pkm-saa-kc6
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tt2-4mm-x8e
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e7s-j3c-vwz
title: †Rotalia Lamarck, 1804

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.4y3m5b
title: Occurrence Download

description: A dataset containing 34600 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Azadirachta indica A.Juss."
 ]
}

 The dataset includes 34600 records from 454 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001929-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25762542
title: supplementary files for manuscript "Intraspecific variation in the <i>hirudin</i> gene family of the Asian buffalo leech (<i>Hirudinaria manillensis</i>)"

description: Hirudin is a natural thrombin inhibitor unique to leeches and has important research and development value. The Asian buffalo leech (Hirudinaria manillensis), an important antithrombotic traditional Chinese medicine, contains five hirudin genes, and the study of the variation patterns of these genes will help to understand the pharmacological mechanism of the Asian buffalo leech. In this study, a total of 70 samples were collected from seven populations of the Asian buffalo leech, and the sequence variation, selection pressure and gene expression characteristics of hirudin genes at the intraspecific level were systematically analyzed based on genome resequencing and transcriptome sequencing data. The results showed that all five hirudin genes were rich in intraspecific variation, with hirudin1 and hirudin2 having high rates of variation, followed by hirudin3 and hirudin5, and hirudin4 being relatively conserved. hirudin5 had two transcript types, S-type (short) and L-type (long), with four and six exons, respectively. In terms of the median selection pressure index (dN/dS), hirudin2 was strongly positively selected (dN/dS = 3.288), hirudin5 was weakly positively selected (dN/dS = 1.110), and the remaining three genes were overall subjected to purified selection (dN/dS &lt; 1). The overall expression differences among the five hirudin genes were highly significant (P &lt; 0.001), with hirudin2 having the highest expression, followed by hirudin1, and the remaining three genes being significantly lower. hirudin2 and hirudin5 showed highly significant differences in expression among the seven populations (P &lt; 0.01), while the remaining three genes did not show any differences between populations. The results of this study indicate that the five hirudins of the Asian buffalo leech are dramatically different in terms of sequence variation, selective pressure, and gene expression characteristics, providing rich genetic resources for the study of hirudin evolutionary patterns and drug development.
DOI: 10.6084/m9.figshare.25762542.v1
title: supplementary files for manuscript "Intraspecific variation in the <i>hirudin</i> gene family of the Asian buffalo leech (<i>Hirudinaria manillensis</i>)"

description: Hirudin is a natural thrombin inhibitor unique to leeches and has important research and development value. The Asian buffalo leech (Hirudinaria manillensis), an important antithrombotic traditional Chinese medicine, contains five hirudin genes, and the study of the variation patterns of these genes will help to understand the pharmacological mechanism of the Asian buffalo leech. In this study, a total of 70 samples were collected from seven populations of the Asian buffalo leech, and the sequence variation, selection pressure and gene expression characteristics of hirudin genes at the intraspecific level were systematically analyzed based on genome resequencing and transcriptome sequencing data. The results showed that all five hirudin genes were rich in intraspecific variation, with hirudin1 and hirudin2 having high rates of variation, followed by hirudin3 and hirudin5, and hirudin4 being relatively conserved. hirudin5 had two transcript types, S-type (short) and L-type (long), with four and six exons, respectively. In terms of the median selection pressure index (dN/dS), hirudin2 was strongly positively selected (dN/dS = 3.288), hirudin5 was weakly positively selected (dN/dS = 1.110), and the remaining three genes were overall subjected to purified selection (dN/dS &lt; 1). The overall expression differences among the five hirudin genes were highly significant (P &lt; 0.001), with hirudin2 having the highest expression, followed by hirudin1, and the remaining three genes being significantly lower. hirudin2 and hirudin5 showed highly significant differences in expression among the seven populations (P &lt; 0.01), while the remaining three genes did not show any differences between populations. The results of this study indicate that the five hirudins of the Asian buffalo leech are dramatically different in terms of sequence variation, selective pressure, and gene expression characteristics, providing rich genetic resources for the study of hirudin evolutionary patterns and drug development.
DOI: 10.15468/dl.qsdvh4
title: Occurrence Download

description: A dataset containing 1114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sagina decumbens (Elliott) Torr. & A.Gray)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1114 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078061-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbnccp
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nematanthus gregarius D.L.Denham)"
 ]
}

 The dataset includes 205 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078063-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8714018
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.15468/dl.qbk6px
title: Occurrence Download

description: A dataset containing 335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nemesia strumosa (Benth.) Benth.)"
 ]
}

 The dataset includes 335 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078064-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.iqy3ilfv
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.15468/dl.gqu5kc
title: Occurrence Download

description: A dataset containing 41544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nassella trichotoma (Nees) Hack. & Arechav.)"
 ]
}

 The dataset includes 41544 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078062-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.