cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9b1vznj
title: USGS National and Global Oil and Gas Assessment Project - Permian Basin Province, Midland Basin, Wolfcamp Shale Assessment Unit Boundaries and Assessment Input Data Forms, Version 2.0

description: The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is defined within the context of the higher-level Total Petroleum System. The Assessment Unit is shown herein as a geographic boundary interpreted, defined, and mapped by the geologist responsible for the province and incorporates a set of known or postulated oil and (or) gas accumulations sharing similar geologic, geographic, and temporal properties within the Total Petroleum System, such as source rock, timing, migration pathways, trapping mechanism, and hydrocarbon type. The Assessment Unit boundary is defined geologically as the limits of the geologic elements that define the Assessment Unit, such as limits of reservoir rock, geologic structures, source rock, and seal lithologies. This data release also contains comma-separated tabular data in machine readable MS Excel format for assessment input data (5044MidlandBasinInputForms.xlsx). The input data if formatted in a human-readable format used during assessment meetings and is included (5044MidlandBasinInputForms.pdf). Documentation for these data and forms is included (Input Forms Column Descriptions.xlsx). Methodology of assessments are documented in USGS Data Series 547 for continuous assessments (https://pubs.usgs.gov/ds/547) and USGS DDS69-D, Chapter 21 for conventional assessments (https://pubs.usgs.gov/dds/dds-069/dds-069-d/REPORTS/69_D_CH_21.pdf). This data release supercedes https://dx.doi.org/10.5066/F72B8W5Q.
DOI: 10.14457/sut.res.2017.36
title: การผลิตพอลิเมอร์พลาสติกชีวภาพจากแป้งมันสำปะหลังโดยแบคทีเรียสายพันธุ์เฉพาะ
DOI: 10.14457/sut.res.2017.37
title: การศึกษาปัจจัยที่มีผลต่อการเลือกใช้จักรยานเพื่อการท่องเที่ยวของคนไทย โดยใช้แบบจำลองโลจิตแบบสองทางเลือก
DOI: 10.14457/ubu.res.2017.5
title: การสังเคราะห์และหาคุณลักษณะของรีดิวซ์กราฟินออกไซด์และฟิล์มบางผสมของ รีดิวซ์กราฟินกับอนุภาคนาโนและการนำไปประยุกต์ใช้เป็นขั้วอิเล็กโทรดสำหรับทำตัวเก็บประจุยิ่งยวด
DOI: 10.17632/bvxjrm9yrn.1
title: Data for: The correlative hypotheses between Pitchfork and Kif3a in palate development

description: original figure
DOI: 10.5281/zenodo.2593704
title: Fluorescence Microscopy Data for Cellular Detection using Object Detection Networks.

description: This data accompanies work from the paper entitled: 

<strong>Object Detection Networks and Augmented Reality for Cellular Detection in Fluorescence Microscopy Acquisition and Analysis.</strong>

<strong>https://www.biorxiv.org/content/10.1101/544833v1 </strong>

doi: https://doi.org/10.1101/544833

Further details of these datasets can be found in the methods section of the above paper.

<strong>Erythroblast DAPI (+GlyphorinA):</strong> Erythroblast cells were stained with DAPI and for glycophorin A protein. Cells were stained with CD235a antibody (JC159 clone from Dako) and with Alexa Fluor 488 secondary antibody from Invitrogen. DAPI staining was performed through using VectorShield Hard Set mounting solution with DAPI (Vector Lab). Num of images used for training: 80 and testing: 80. Average number of cells per image: 4.5.

<strong>Neuroblastoma phalloidin (+DAPI): </strong>Images of Neuroblastoma cells (N1E115) stained with phalloidin and DAPI were acquired from the Cell Image Library [25]. The images were stained for FITC-phalloidin and DAPI. Images were acquired on a Zeiss Aviovert 200 microscope with filters for DAPI and FITC. Num of images used for training: 180, testing: 180. Average number of cells per image: 11.7.

<strong>Fibroblast Nucleopore</strong>: Fibroblast (GM5756T) cells were stained for Nucleopore protein. Staining was performed using Anti-Nup153 mouse antibody (Abcam) and counterstained using Alex Fluor 488 (anti-mouse). Num of images for training: 26 and testing: 20. Average number of cells per image: 4.8.

<strong>Eukaryote DAPI:</strong> Eukaryote cells were stained with DAPI and fixed and mounted in Vectashield. Num of images for training: 40 and testing: 40. Average number of cells per image: 8.9.

<strong>C127 DAPI:</strong> C127 cells were stained with DAPI and fixed and mounted in Vectashield. Num of images for training: 30 and testing: 30. Average number of cells per image: 7.1.

<strong>HEK peroxisome</strong>: HEK cells expressing peroxisome localised SCP2-GFP protein. Cells were transfected with GFP-SCP2 protein, which contains the PTS-1 localisation signal, which redirects the fluorescently tagged protein to the actively importing peroxisomes. Cells were fixed and mounted.  Num of images for training: 55 and testing: 55. Average number of cells per image: 7.9.

<strong>Dataset Annotation</strong>

Datasets were annotated by a skilled user.  Bounding boxes were drawn to encapsulate the various staining of the cells. The dataset labels were then converted into a format compatible both with Faster-RCNN (Pascal) and with YOLOv2.  T
DOI: 10.17632/5tdr6wxcfw.1
title: Data for: The correlative hypotheses between Pitchfork and Kif3a in palate development

description: original figure
DOI: 10.21227/3b8n-vv95
title: Supplementary Material for “EEG Signal Processing in MI-BCI Applications with Improved Covariance Matrix Estimators”

description: This material is associated with the PhD Thesis of Javier Olias (which is supervised by Sergio Cruces) and the article:
DOI: 10.17632/grrywbz2b2.1
title: Numerical evaluation of virtual corrections to multi-jet production in massless QCD

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present a C++ library for the numerical evaluation of one-loop virtual corrections to multi-jet production in massless QCD. The pure gluon primitive amplitudes are evaluated using NGluon (Badger et al., (2011) [62]). A generalized unitarity reduction algorithm is used to construct arbitrary multiplicity fermion–gluon primitive amplitudes. From these basic building blocks the one-loop contribution to the squared matrix element, summed over colour and helicities, is calculated. No approximat... Title of program: NJET Catalogue Id: AEPF_v1_0 Nature of problem Evaluation of virtual corrections for multi-jet production in massless QCD Versions of this program held in the CPC repository in Mendeley Data AEPF_v1_0; NJET; 10.1016/j.cpc.2013.03.018
DOI: 10.17632/ks7wsr8ht8.1
title: ZKCM: A C++ library for multiprecision matrix computation with applications in quantum information

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract ZKCM is a C++ library developed for the purpose of multiprecision matrix computation, on the basis of the GNU MP and MPFR libraries. It provides an easy-to-use syntax and convenient functions for matrix manipulations including those often used in numerical simulations in quantum physics. Its extension library, ZKCM_QC, is developed for simulating quantum computing using the time-dependent matrix-product-state simulation method. This paper gives an introduction about the libraries with practic... Title of program: ZKCM Catalogue Id: AEPI_v1_0 Nature of problem Multiprecision computation is helpful to guarantee and/or evaluate the accuracy of simulation results in numerical physics. There is a potential demand for a programming library focusing on matrix computation usable for this purpose with a user-friendly syntax. Versions of this program held in the CPC repository in Mendeley Data AEPI_v1_0; ZKCM; 10.1016/j.cpc.2013.03.022
DOI: 10.17632/yhs5dk4wrh.1
title: Hydrodynamic forces implemented into LAMMPS through a lattice-Boltzmann fluid

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract Long-range hydrodynamic interactions have been implemented into the open-source molecular dynamics package, LAMMPS, though the creation of a fix, lb_fluid. These interactions are treated by interpolating the MD particle density onto a discrete lattice, which is then coupled to the fluid. A thermal lattice-Boltzmann algorithm is used to model the fluid, which includes mass and momentum conserving noise, providing a thermostat for both the particles and the fluid. Title of program: fix_lb_fluid Catalogue Id: AEPH_v1_0 Nature of problem The inclusion of long-range hydrodynamic effects into molecular dynamics simulations requires the presence of an explicit solvent. Currently, the only option for incorporating such a solvent into a LAMMPS [1] simulation is the explicit inclusion of each of the individual solvent molecules. This is obviously quite computationally intensive, and for large system sizes can quickly become impractical. Versions of this program held in the CPC repository in Mendeley Data AEPH_v1_0; fix_lb_fluid; 10.1016/j.cpc.2013.03.024
DOI: 10.17632/5mjyxjx5tx.1
title: Some procedures for the construction of high-order exponentially fitted Runge–Kutta–Nyström methods of explicit type

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract The construction of high-order exponentially fitted Runge–Kutta–Nyström (EFRKN) methods of explicit type for the numerical solution of oscillatory differential systems is analyzed. Based on two basic symmetric and symplectic EFRKN methods of reference we present two procedures for constructing high-order explicit methods. The first procedure is based on composition methods and it allows the construction of high-order explicit EFRKN methods which are symmetric and symplectic. The second proced... Title of program: SVI-IIEXPOreferee.for and SVI-IIvarreferee.for Catalogue Id: AEOO_v1_0 Nature of problem Some models in astronomy and astrophysics, quantum mechanics and nuclear physics lead to second-order oscillatory differential systems. The solution of these oscillatory models requires accurate and efficient numerical methods. The codes SVI-IIEXPOreferee.for and SVI-IIvarreferee.for were developed for this purpose. Versions of this program held in the CPC repository in Mendeley Data AEOO_v1_0; SVI-IIEXPOreferee.for and SVI-IIvarreferee.for; 10.1016/j.cpc.2012.12.018
DOI: 10.17632/gt94p7359b.1
title: The FTS atomic spectrum tool (FAST) for rapid analysis of line spectra

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract The FTS Atomic Spectrum Tool (FAST) is an interactive graphical program designed to simplify the analysis of atomic emission line spectra obtained from Fourier transform spectrometers. Calculated, predicted and/or known experimental line parameters are loaded alongside experimentally observed spectral line profiles for easy comparison between new experimental data and existing results. Many such line profiles, which could span numerous spectra, may be viewed simultaneously to help the user de... Title of program: FAST: The FTS Atomic Spectrum Tool Catalogue Id: AEOW_v1_0 Nature of problem Visualisation of atomic line spectra including the comparison of theoretical line parameters with experimental atomic line profiles. Accurate intensity calibration of experimental spectra, and the determination of observed relative line intensities that are needed for calculating atomic branching fractions and oscillator strengths. Versions of this program held in the CPC repository in Mendeley Data AEOW_v1_0; FAST: The FTS Atomic Spectrum Tool; 10.1016/j.cpc.2013.01.021
DOI: 10.17632/h92rc2tj4m.1
title: EVO—Evolutionary algorithm for crystal structure prediction

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present EVO—an evolution strategy designed for crystal structure search and prediction. The concept and main features of biological evolution such as creation of diversity and survival of the fittest have been transferred to crystal structure prediction. EVO successfully demonstrates its applicability to find crystal structures of the elements of the 3rd main group with their different spacegroups. For this we used the number of atoms in the conventional cell and multiples of it. Running ... Title of program: EVO Catalogue Id: AEOZ_v1_0 Nature of problem Crystal structure search is a global optimisation problem in 3N+3 dimensions where N is the number of atoms in the unit cell. The high dimensional search space is accompanied by an unknown energy landscape. Versions of this program held in the CPC repository in Mendeley Data AEOZ_v1_0; EVO; 10.1016/j.cpc.2013.02.007
DOI: 10.17632/jj8wmstk36.1
title: FORM version 4.0

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present version 4.0 of the symbolic manipulation system Form. The most important new features are manipulation of rational polynomials and the factorization of expressions. Many other new functions and commands are also added; some of them are very general, while others are designed for building specific high level packages, such as one for Gröbner bases. New is also the checkpoint facility, that allows for periodic backups during long calculations. Finally, Form 4.0 has become available a... Title of program: FORM. Catalogue Id: AEOT_v1_0 Nature of problem FORM defines a symbolic manipulation language in which the emphasis lies on fast processing of very large formulas. It has been used successfully for many calculations in Quantum Field Theory and mathematics. In speed and size of formulas that can be handled it outperforms other systems typically by an order of magnitude. Special in this version: The version 4.0 contains many new features. Most important are factorization and rational arithmetic. The program has also become Open Source under the ... Versions of this program held in the CPC repository in Mendeley Data AEOT_v1_0; FORM.; 10.1016/j.cpc.2012.12.028
DOI: 10.17632/rt797s2j6f.1
title: dftatom: A robust and general Schrödinger and Dirac solver for atomic structure calculations

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract A robust and general solver for the radial Schrödinger, Dirac, and Kohn–Sham equations is presented. The formulation admits general potentials and meshes: uniform, exponential, or other defined by nodal distribution and derivative functions. For a given mesh type, convergence can be controlled systematically by increasing the number of grid points. Radial integrations are carried out using a combination of asymptotic forms, Runge–Kutta, and implicit Adams methods. Eigenfunctions are determine... Title of program: dftatom Catalogue Id: AEPA_v1_0 Nature of problem Solution of the Schrödinger, Dirac, and Kohn-Sham equations of Density Functional Theory for isolated atoms. Versions of this program held in the CPC repository in Mendeley Data AEPA_v1_0; dftatom; 10.1016/j.cpc.2013.02.014
DOI: 10.17632/hdtpts8t5y.1
title: Parallel grid library for rapid and flexible simulation development

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present an easy to use and flexible grid library for developing highly scalable parallel simulations. The distributed cartesian cell-refinable grid (dccrg) supports adaptive mesh refinement and allows an arbitrary C++ class to be used as cell data. The amount of data in grid cells can vary both in space and time allowing dccrg to be used in very different types of simulations, for example in fluid and particle codes. Dccrg transfers the data between neighboring cells on different processes... Title of program: DCCRG Catalogue Id: AEOM_v1_0 Nature of problem Grid library supporting arbitrary data in grid cells, parallel adaptive mesh refinement, transparent remote neighbor data updates and load balancing. Versions of this program held in the CPC repository in Mendeley Data AEOM_v1_0; DCCRG; 10.1016/j.cpc.2012.12.017
DOI: 10.17632/m8d9n7v5mz.1
title: RPMDrate: Bimolecular chemical reaction rates from ring polymer molecular dynamics

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present RPMDrate, a computer program for the calculation of gas phase bimolecular reaction rate coefficients using the ring polymer molecular dynamics (RPMD) method. The RPMD rate coefficient is calculated using the Bennett–Chandler method as a product of a static (centroid density quantum transition state theory (QTST) rate) and a dynamic (ring polymer transmission coefficient) factor. The computational procedure is general and can be used to treat bimolecular polyatomic reactions of any ... Title of program: RPMDrate Catalogue Id: AENW_v1_0 Nature of problem The RPMDrate program calculates thermal bimolecular rate coefficients of thermally activated atom-diatom and more complex bimolecular chemical reactions in the gas phase. Versions of this program held in the CPC repository in Mendeley Data AENW_v1_0; RPMDrate; 10.1016/j.cpc.2012.10.017
DOI: 10.17632/rsfx69pd44.1
title: GMES: A Python package for solving Maxwell’s equations using the FDTD method

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract This paper describes GMES, a free Python package for solving Maxwell’s equations using the finite-difference time-domain (FDTD) method. The design of GMES follows the object-oriented programming (OOP) approach and adopts a unique design strategy where the voxels in the computational domain are grouped and then updated according to its material type. This piecewise updating scheme ensures that GMES can adopt OOP without losing its simple structure and time-stepping speed. The users can easily ... Title of program: GMES Catalogue Id: AEOK_v1_0 Nature of problem Classical electrodynamics Versions of this program held in the CPC repository in Mendeley Data AEOK_v1_0; GMES; 10.1016/j.cpc.2012.12.011
DOI: 10.24431/rw1k31s
title: Large-mesh bottom trawl surveys for crabs and groundfishes in Cook Inlet and Prince William Sound, 1989–2018

description: The Alaska Department of Fish and Game conducted bottom trawl surveys for crabs and groundfishes in Cook Inlet and Prince William Sound from 1989 to 2018. The trawl surveys superseded earlier pot surveys as the primary assessment of Tanner and red king crab abundance. Three areas were surveyed either annually or biennialy: Kachemak Bay (1989–2018), Kamishak Bay (1990–2012), and Prince William Sound (1990–2018). A 400-mesh Eastern otter trawl with either a 70 or 78 ft headrope, 95 ft footrope, and nominal swept width of 40 ft, was towed for 0.5 or 1.0 nmi. Stretch mesh sizes were 4.0 inches in the wings and body, 3.5 inches in the intermediate, and 1.3 in the codend liner. Tanner, king, and Dungeness crab catch was fully accounted for throughout the duration of the survey. Full catch accounting of other species began in 1995 for Kachemak Bay, 1998 for Kamishak Bay, and 1999 for Prince William sound. Prior to these years recording of bycatch, as well as the list of target species which were fully documented, varied. Taxonomic identification generally became more specific and correct over time.
DOI: 10.17632/35vyyx9jwy.1
title: An adaptor for C++ callbacks with C and Fortran libraries

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract Object-oriented programming using C++ is increasingly being adopted in the development of scientific codes. A recurrent issue in this regard is the interaction of newly developed codes with existing legacy libraries written in C or Fortran. Often, one needs to pass raw function pointers to such libraries’ procedures for callback purposes. This is problematic as it conflicts with one of the cornerstones of object-oriented programming: the association of functions and data through objects. Curr... Title of program: Adapt2rfp Catalogue Id: AENU_v1_0 Nature of problem Object-oriented programming using C++ is increasingly being adopted in the development of scientific codes. A recurrent issue in this regard, is the interaction of newly developed codes with existing legacy libraries written in C or Fortran. Often, one needs to pass raw function pointers to such libraries' procedures for callback purposes. This is problematic as it conflicts with one of the cornerstones of object-oriented programming, the association of functions and data through objects. Curren ... Versions of this program held in the CPC repository in Mendeley Data AENU_v1_0; Adapt2rfp; 10.1016/j.cpc.2012.10.016
DOI: 10.17632/mt5m7mck5k.1
title: SuSeFLAV 1.2: Program for supersymmetric mass spectra with seesaw mechanism and rare lepton flavor violating decays

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract Accurate supersymmetric spectra are required to confront data from direct and indirect searches of supersymmetry. SuSeFLAV 1 1 http://cts.iisc.ernet.in/Suseflav/main.html. is a numerical tool capable of computing supersymmetric spectra precisely for various supersymmetric breaking scenarios applicable even in the presence of flavor violation. The program solves MSSM RGEs with complete 3 × 3 flavor mixing at 2-loop level and one loop finite threshold corrections to all MSSM parameters by inco... Title of program: SuSeFLAV Catalogue Id: AEOD_v1_0 Nature of problem Determination of masses and mixing of supersymmetric particles within the context of MSSM with conserved R-parity with and without the presence of Type-I seesaw. Inter-generational mixing is considered while calculating the mass spectrum. Supersymmetry breaking parameters are taken as inputs at a high scale specified by the mechanism of supersymmetry breaking. RG equations including full inter-generational mixing are then used to evolve these parameters up to the electroweak breaking scale. The ... Versions of this program held in the CPC repository in Mendeley Data AEOD_v1_0; SuSeFLAV; 10.1016/j.cpc.2012.10.031
DOI: 10.17632/my4t9yt4y5.1
title: Imaginary time propagation code for large-scale two-dimensional eigenvalue problems in magnetic fields

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present a code for solving the single-particle, time-independent Schrödinger equation in two dimensions. Our program utilizes the imaginary time propagation (ITP) algorithm, and it includes the most recent developments in the ITP method: the arbitrary order operator factorization and the exact inclusion of a (possibly very strong) magnetic field. Our program is able to solve thousands of eigenstates of a two-dimensional quantum system in reasonable time with commonly available hardware. Th... Title of program: itp2d Catalogue Id: AENR_v1_0 Nature of problem Numerical calculation of the lowest energy solutions (up to a few thousand, depending on available memory), of a single-particle, time-independent Schrödinger equation in two dimensions with or without a homogeneous magnetic field. Versions of this program held in the CPC repository in Mendeley Data AENR_v1_0; itp2d; 10.1016/j.cpc.2012.09.029