cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1319442
title: Decadal sustainability of spatial distribution of soil properties in a paddy field as a fingerprint reflecting soil-forming factors and field management

description: Spatiotemporal variations of soil properties were measured in a Japanese paddy field in order to evaluate how they were created and sustained through various field managements. The field was subjected to land consolidation during 1960s, heterogeneous application of manure in the late 1970s and land leveling in 1986, 1987 and 2003. Surface soils were collected from throughout the field in 2002 and 2012, and the physicochemical properties were analyzed. Additional analyses were carried out for relative altitude in 1986, 1999 and 2012, and soil hardness in 2012. In the field examined, the distribution of field attributes reflected past field managements. The heterogeneous distribution of relative altitude was partly explained by the passage of agricultural machinery, whereas the heterogeneous distribution of soil organic matter was partly explained by both past and recent applications of animal dung manure. In general, the measured soil properties were maintained from 2002 to 2012, and the pattern of spatial distribution did not change significantly for many of the properties. The correlation coefficient of the distribution patterns between 2002 and 2012 was highest for yellowness (0.95), followed by sand (0.90), acid-oxalate extractable iron (Fe; 0.88), available phosphorus (P; 0.87), redness (0.82), lightness (0.77), sand-size organic matter (0.74) and total nitrogen (N; 0.72). Land leveling carried out in 2003 barely influenced the distribution of these properties. Among these properties, soil color parameters and sand content can be measured rapidly without reagents and will be useful for characterizing paddy fields according to the distribution of stable soil properties. The analysis of the natural abundance of <sup>15</sup>N in soil was also effective to suggest the contribution of the application of animal dung manure to the accumulation of soil organic matter at a within-field scale. It can be concluded, as a general rule, that each paddy field has its own fingerprint which is unveiled by precise soil sampling and analyses of stable properties.
DOI: 10.6084/m9.figshare.1319442.v1
title: Decadal sustainability of spatial distribution of soil properties in a paddy field as a fingerprint reflecting soil-forming factors and field management

description: Spatiotemporal variations of soil properties were measured in a Japanese paddy field in order to evaluate how they were created and sustained through various field managements. The field was subjected to land consolidation during 1960s, heterogeneous application of manure in the late 1970s and land leveling in 1986, 1987 and 2003. Surface soils were collected from throughout the field in 2002 and 2012, and the physicochemical properties were analyzed. Additional analyses were carried out for relative altitude in 1986, 1999 and 2012, and soil hardness in 2012. In the field examined, the distribution of field attributes reflected past field managements. The heterogeneous distribution of relative altitude was partly explained by the passage of agricultural machinery, whereas the heterogeneous distribution of soil organic matter was partly explained by both past and recent applications of animal dung manure. In general, the measured soil properties were maintained from 2002 to 2012, and the pattern of spatial distribution did not change significantly for many of the properties. The correlation coefficient of the distribution patterns between 2002 and 2012 was highest for yellowness (0.95), followed by sand (0.90), acid-oxalate extractable iron (Fe; 0.88), available phosphorus (P; 0.87), redness (0.82), lightness (0.77), sand-size organic matter (0.74) and total nitrogen (N; 0.72). Land leveling carried out in 2003 barely influenced the distribution of these properties. Among these properties, soil color parameters and sand content can be measured rapidly without reagents and will be useful for characterizing paddy fields according to the distribution of stable soil properties. The analysis of the natural abundance of <sup>15</sup>N in soil was also effective to suggest the contribution of the application of animal dung manure to the accumulation of soil organic matter at a within-field scale. It can be concluded, as a general rule, that each paddy field has its own fingerprint which is unveiled by precise soil sampling and analyses of stable properties.
DOI: 10.6084/m9.figshare.1287664.v1
title: Peribacteroid solution of soybean root nodules partly induces genomic loci for differentiation into bacteroids of free-living <i>Bradyrhizobium japonicum</i> cells

description: In leguminous root nodules, rhizobia differentiate into morphology specific to symbiosis, called bacteroids. As bacteroids are surrounded with peribacteroid membranes filled with peribacteroid solution (PBS), it is considered that PBS contains substances inducing differentiation of rhizobia into bacteroids. In this study, genome-wide expression profiles of <i>Bradyrhizobium japonicum</i> cells cultured in PBS purified from root nodule of soybean (<i>Glycine max</i> L.) were compared with those of bacteroids using macroarray. PBS treatment preferentially induced regions in a large symbiosis island including various symbiosis relevant genes such as <i>nod, fix, nol</i> and <i>noe</i>, in which 75% of regions were commonly induced in bacteroids, while general repressions outside of the symbiosis island seen in bacteroids were not observed in PBS treated cells. The present results suggest that PBS contained some, but not all, substances inducing expression of the genes which are involved in differentiation into bacteroids.
DOI: 10.6084/m9.figshare.1320792
title: Changes in the composition of humic acids in various upland field soils with a continuous application of an organic amendment as revealed by fractional precipitation analysis

description: The effect of the continuous application of an organic amendment (OA) on the accumulation and composition of humic acids (HAs) in various upland field soils was analyzed using a fractional precipitation technique. Fractionation patterns of HAs from plots treated with farmyard manure (FYM) or composted rice straw plus chemical fertilizer (CF) and from plots treated with CF alone were obtained by the step-wise addition of ethanol, 200–800 mL L<sup>−1</sup>, to HAs dissolved in 0.01 M sodium hydroxide (NaOH), and their degrees of humification were compared. HAs with a higher degree of humification precipitated in more dilute ethanol concentrations. The largest distribution shifted to a fraction that precipitated at a lower ethanol concentration with increasing degree of humification of bulk HAs, without an accompanying decrease in the amount of fractions with lower degrees of humification. A continuous OA application resulted in larger HA fractions with lower degrees of humification in most of the fields. The progression of humification in OA-derived HAs and interactions with indigenous soil HAs were also suggested from the fractionation patterns. The structural properties of the sub-fractions were evaluated using Miyagi soil (Cambisol) HAs. High performance size exclusion chromatography indicated that the larger molecular size molecules tended to precipitate at lower ethanol concentrations. The contribution of FYM-derived materials to the FYM+CF plot HA sub-fractions was suggested by a larger distribution of larger molecular size molecules compared to the corresponding HA sub-fractions from the CF plot soil. <sup>13</sup>C cross polarization/magic angle spinning nuclear magnetic resonance analysis indicated that the fractions that precipitated at lower ethanol concentrations had more aromatic characteristics than the fractions that precipitated at higher ethanol concentrations and were soluble in 800 mL L<sup>−1</sup> ethanol. These samples were characterized by a high alkyl carbon (C) content and intense signals corresponding to methoxyl and phenolic C. A correlation analysis for the HA sub-fractions both from the FYM+CF and CF plots indicated that their degree of humification corresponds to the composition of C functional groups.
DOI: 10.6084/m9.figshare.1320792.v2
title: Changes in the composition of humic acids in various upland field soils with a continuous application of an organic amendment as revealed by fractional precipitation analysis

description: The effect of the continuous application of an organic amendment (OA) on the accumulation and composition of humic acids (HAs) in various upland field soils was analyzed using a fractional precipitation technique. Fractionation patterns of HAs from plots treated with farmyard manure (FYM) or composted rice straw plus chemical fertilizer (CF) and from plots treated with CF alone were obtained by the step-wise addition of ethanol, 200–800 mL L<sup>−1</sup>, to HAs dissolved in 0.01 M sodium hydroxide (NaOH), and their degrees of humification were compared. HAs with a higher degree of humification precipitated in more dilute ethanol concentrations. The largest distribution shifted to a fraction that precipitated at a lower ethanol concentration with increasing degree of humification of bulk HAs, without an accompanying decrease in the amount of fractions with lower degrees of humification. A continuous OA application resulted in larger HA fractions with lower degrees of humification in most of the fields. The progression of humification in OA-derived HAs and interactions with indigenous soil HAs were also suggested from the fractionation patterns. The structural properties of the sub-fractions were evaluated using Miyagi soil (Cambisol) HAs. High performance size exclusion chromatography indicated that the larger molecular size molecules tended to precipitate at lower ethanol concentrations. The contribution of FYM-derived materials to the FYM+CF plot HA sub-fractions was suggested by a larger distribution of larger molecular size molecules compared to the corresponding HA sub-fractions from the CF plot soil. <sup>13</sup>C cross polarization/magic angle spinning nuclear magnetic resonance analysis indicated that the fractions that precipitated at lower ethanol concentrations had more aromatic characteristics than the fractions that precipitated at higher ethanol concentrations and were soluble in 800 mL L<sup>−1</sup> ethanol. These samples were characterized by a high alkyl carbon (C) content and intense signals corresponding to methoxyl and phenolic C. A correlation analysis for the HA sub-fractions both from the FYM+CF and CF plots indicated that their degree of humification corresponds to the composition of C functional groups.
DOI: 10.6084/m9.figshare.1320792.v1
title: Changes in the composition of humic acids in various upland field soils with a continuous application of an organic amendment as revealed by fractional precipitation analysis

description: The effect of the continuous application of an organic amendment (OA) on the accumulation and composition of humic acids (HAs) in various upland field soils was analyzed using a fractional precipitation technique. Fractionation patterns of HAs from plots treated with farmyard manure (FYM) or composted rice straw plus chemical fertilizer (CF) and from plots treated with CF alone were obtained by the step-wise addition of ethanol, 200–800 mL L<sup>−1</sup>, to HAs dissolved in 0.01 M sodium hydroxide (NaOH), and their degrees of humification were compared. HAs with a higher degree of humification precipitated in more dilute ethanol concentrations. The largest distribution shifted to a fraction that precipitated at a lower ethanol concentration with increasing degree of humification of bulk HAs, without an accompanying decrease in the amount of fractions with lower degrees of humification. A continuous OA application resulted in larger HA fractions with lower degrees of humification in most of the fields. The progression of humification in OA-derived HAs and interactions with indigenous soil HAs were also suggested from the fractionation patterns. The structural properties of the sub-fractions were evaluated using Miyagi soil (Cambisol) HAs. High performance size exclusion chromatography indicated that the larger molecular size molecules tended to precipitate at lower ethanol concentrations. The contribution of FYM-derived materials to the FYM+CF plot HA sub-fractions was suggested by a larger distribution of larger molecular size molecules compared to the corresponding HA sub-fractions from the CF plot soil. <sup>13</sup>C cross polarization/magic angle spinning nuclear magnetic resonance analysis indicated that the fractions that precipitated at lower ethanol concentrations had more aromatic characteristics than the fractions that precipitated at higher ethanol concentrations and were soluble in 800 mL L<sup>−1</sup> ethanol. These samples were characterized by a high alkyl carbon (C) content and intense signals corresponding to methoxyl and phenolic C. A correlation analysis for the HA sub-fractions both from the FYM+CF and CF plots indicated that their degree of humification corresponds to the composition of C functional groups.
DOI: 10.34740/kaggle/dsv/1614387
title: ISWC 2020: COVID-19 Literature Knowledge Graph
DOI: 10.6084/m9.figshare.10260722
title: Data from: Key factors explaining critical swimming speed in freshwater fish: a review and statistical analysis for Iberian species

description: Ucrit data for 35 Iberian freshwater species (18 native and 17 alien), from more than 90 literature sources published from 1959 to 2019.
DOI: 10.6084/m9.figshare.10260722.v2
title: Data from: A review and statistical analysis of the key factors explaining critical swimming speed in Iberian freshwater fishes

description: Ucrit data for 35 Iberian freshwater species (18 native and 17 alien), from more than 90 literature sources published from 1959 to 2019.
DOI: 10.5281/zenodo.3689521
title: Car sharing simulation dataset

description: Simulated Car-sharing data-set with multiple fields including activities of anonymized users (e.g. source, destination, travel time, price offers etc.)
DOI: 10.5281/zenodo.3689520
title: Car sharing simulation dataset

description: Simulated Car-sharing data-set with multiple fields including activities of anonymized users (e.g. source, destination, travel time, price offers etc.)
DOI: 10.5281/zenodo.4226114
title: Resultados_Euromillones

description: El conjunto de datos contiene el resultado de los sorteos del juego Euromillones que se han realizado desde el año 2004.
DOI: 10.5281/zenodo.4226113
title: Resultados_Euromillones

description: El conjunto de datos contiene el resultado de los sorteos del juego Euromillones que se han realizado desde el año 2004.
DOI: 10.5281/zenodo.4226531
title: Corrected super-resolution microscopy enables nanoscale imaging of auto-fluorescent lung macrophages

description: Observing the cell surface and underlying cytoskeleton at nanoscale resolution using super-resolution microscopy has enabled many insights into cell signalling and function. However, the nanoscale dynamics of tissue-specific immune cells have been relatively little studied. Tissue macrophages, for example, are highly auto-fluorescent, severely limiting the utility of light microscopy. Here, we report a correction technique to remove auto-fluorescent noise from Stochastic Optical Reconstruction Microscopy (STORM) datasets. Simulations identified a moving median filter as an accurate and robust correction technique. Using this, we were able to visualise lung macrophages activated through Fc receptors by antibody-coated glass slides. Accurate, nanoscale quantification of macrophage morphology revealed that activation induced the formation of cellular protrusions tipped with MHC class I protein. These data are consistent with a role for lung macrophage protrusions in antigen presentation. We further show that the tetraspanin and extracellular vesicle (EV) marker CD81 appears in ring-shaped structures (mean diameter 93 ± 50 nm) at the surface of activated lung macrophages, likely marking the secretion of extracellular vesicles. Moreover, this correction method for super-resolution microscopy is widely applicable to other challenging biological samples.
DOI: 10.5281/zenodo.4034172
title: Corrected super-resolution microscopy enables nanoscale imaging of auto-fluorescent lung macrophages

description: Observing the cell surface and underlying cytoskeleton at nanoscale resolution using super-resolution microscopy has enabled many insights into cell signalling and function. However, the nanoscale dynamics of tissue-specific immune cells have been relatively little studied. Tissue macrophages, for example, are highly auto-fluorescent, severely limiting the utility of light microscopy. Here, we report a correction technique to remove auto-fluorescent noise from Stochastic Optical Reconstruction Microscopy (STORM) datasets. Simulations identified a moving median filter as an accurate and robust correction technique. Using this, we were able to visualise lung macrophages activated through Fc receptors by antibody-coated glass slides. Accurate, nanoscale quantification of macrophage morphology revealed that activation induced the formation of cellular protrusions tipped with MHC class I protein. These data are consistent with a role for lung macrophage protrusions in antigen presentation. We further show that the tetraspanin and extracellular vesicle (EV) marker CD81 appears in ring-shaped structures (mean diameter 93 ± 50 nm) at the surface of activated lung macrophages, likely marking the secretion of extracellular vesicles. Moreover, this correction method for super-resolution microscopy is widely applicable to other challenging biological samples.
DOI: 10.25500/edata.bham.00000565
title: Research data supporting "Distinct chemical and mineralogical composition of Icelandic dust compared to Northern African and Asian dust"
DOI: 10.5517/ccdc.csd.cc252b1n
title: CCDC 1998230: Experimental Crystal Structure Determination

description: Related Article: Qiuyue Zhang, Ningning Wu, Junfeng Xiang, Gregory A. Solan, Hongyi Suo, Yanping Ma, Tongling Liang, Wen-Hua Sun|2020|Dalton Trans.|49|9425|doi:10.1039/D0DT01876G
DOI: 10.5517/ccdc.csd.cc252b2p
title: CCDC 1998231: Experimental Crystal Structure Determination

description: Related Article: Qiuyue Zhang, Ningning Wu, Junfeng Xiang, Gregory A. Solan, Hongyi Suo, Yanping Ma, Tongling Liang, Wen-Hua Sun|2020|Dalton Trans.|49|9425|doi:10.1039/D0DT01876G
DOI: 10.5281/zenodo.3816663
title: Diffraction Images for the Crystal structure of CYP124 in complex with SQ109 (PDB ID: 6T0J)

description: The archive contains <strong>2</strong> folders: <strong>data</strong> contains 2400 raw X-ray diffraction images <strong>proc</strong> contains input data for integration (XDS.INP and x[y]_geo_corr.CBF), integrated dataset (XDS_ASCII.HKL), input and output for scaling (XSCALE.INP and XSCALE.LP, respectively), scaled dataset: merged and not merged (scaled_merged.HKL and scaled_nonmerged.HKL, respectively) and structure factors with utilized R-free flags (f_obs.mtz) General information about the data collection: Beamline: ESRF ID23-1 Detector: PILATUS 6M-F Flux: 3.2e+10 ph/sec Energy (Wavelength): 12.755 keV (0.9720 Å) Oscillation: 0.15<sup>o</sup> Total range: 360<sup>o</sup> Transmition: 8.0% Exposure time: 0.1 s Detector Distance: 155.00 mm Resolution (corner): 1.08 Å (0.93 Å)
DOI: 10.5517/ccdc.csd.cc25w036
title: CCDC 2021947: Experimental Crystal Structure Determination

description: Related Article: Ivan V. Lapshin, Anton V. Cherkasov, Andrey F. Asachenko, Alexander A. Trifonov|2020|Chem.Commun.|56|12913|doi:10.1039/D0CC05424K
DOI: 10.5517/ccdc.csd.cc25w047
title: CCDC 2021948: Experimental Crystal Structure Determination

description: Related Article: Ivan V. Lapshin, Anton V. Cherkasov, Andrey F. Asachenko, Alexander A. Trifonov|2020|Chem.Commun.|56|12913|doi:10.1039/D0CC05424K
DOI: 10.5281/zenodo.3816662
title: Diffraction Images for the Crystal structure of CYP124 in complex with SQ109 (PDB ID: 6T0J)

description: The archive contains <strong>2</strong> folders: <strong>data</strong> contains 2400 raw X-ray diffraction images <strong>proc</strong> contains input data for integration (XDS.INP and x[y]_geo_corr.CBF), integrated dataset (XDS_ASCII.HKL), input and output for scaling (XSCALE.INP and XSCALE.LP, respectively), scaled dataset: merged and not merged (scaled_merged.HKL and scaled_nonmerged.HKL, respectively) and structure factors with utilized R-free flags (f_obs.mtz) General information about the data collection: Beamline: ESRF ID23-1 Detector: PILATUS 6M-F Flux: 3.2e+10 ph/sec Energy (Wavelength): 12.755 keV (0.9720 Å) Oscillation: 0.15<sup>o</sup> Total range: 360<sup>o</sup> Transmition: 8.0% Exposure time: 0.1 s Detector Distance: 155.00 mm Resolution (corner): 1.08 Å (0.93 Å)
DOI: 10.5517/ccdc.csd.cc25y5nz
title: CCDC 2024041: Experimental Crystal Structure Determination

description: Related Article: Pau Moneva Lorente, Antoine Wallabregue, Francesco Zinna, Céline Besnard, Lorenzo Di Bari, Jérôme Lacour|2020|Org.Biomol.Chem.|18|7677|doi:10.1039/D0OB01809K
DOI: 10.5281/zenodo.4226931
title: Smart Energy Multilayered Clustering Dataset - I

description: Clustering data-set for multilayered contextualized smart energy blockchain traces
DOI: 10.5281/zenodo.4226930
title: Smart Energy Multilayered Clustering Dataset - I

description: Clustering data-set for multilayered contextualized smart energy blockchain traces
DOI: 10.5281/zenodo.4226859
title: Nanosats Information

description: This dataset is resultant of scrape the website nanosats.eu to extract information of all nanosat misions.
DOI: 10.5281/zenodo.2591771
title: deleted

description: deleted
DOI: 10.5281/zenodo.2591770
title: deleted

description: deleted
DOI: 10.5281/zenodo.2591767
title: deleted

description: deleted
DOI: 10.5281/zenodo.2591766
title: deleted

description: deleted
DOI: 10.15156/bio/sh2857757.08fu
title: SH2857757.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.