cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rybgtbbhs9.5
title: Dataset for MEdit4CEP-SP: a model-driven solution to improve decision-making through user-friendly management and real-time processing of heterogeneous data streams

description: In this dataset we collect the Event Processing Language (EPL) patterns used in this work, as well as some screenshots of the proposed system, MEdit4CEP-SP. EPL &gt; pattern.epl contains all the patterns for the situations described on the paper (AnomalyReadingErrors, AnomalyWaterLeaks and AnomalyUnusualConsumption). Screenshots &gt; reading-errors-pattern.png shows the graphical model, in the editor, of the pattern AnomalyReadingErrors described on the paper. Screenshots &gt; water-leaks-pattern.png shows the graphical model, in the editor, of the pattern AnomalyWaterLeaks described on the paper. Screenshots &gt; unusual-consumption-pattern.png shows the graphical model, in the editor, of the pattern AnomalyUnusualConsumption described on the paper. Screenshots &gt; pattern-changes-alert.png shows the alert that the editor triggers when an existing pattern has been updated. Screenshots &gt; pattern-remove-backup.png shows the dialog to select the folder where the removed existing pattern is going to be exported.
DOI: 10.17632/55s3m9kms7.1
title: Preliminary geochemical investigation of some crude oils from the Niger Delta Basin Nigeria

description: Geochemical studies on twenty-eight crude-oil samples from nine oilfields, onshore-offshore parts of Niger Delta Basin, were performed to classify the oils into various classes, determine the bulk compositions of oils, organic matter inputs, source depositional environment, thermal maturation, and in-reservoir processes, for petroleum system prediction. The oils were fractionated into individual bulk compositions of saturates, aromatics, resins, and asphaltenes (SARA), using the Iatroscan thin-layer chromatography-flame ionization detector (FID) technique. Column chromatography was utilized to separate the saturates, and were further analyzed with gas chromatography-FID for n-alkane and acyclic isoprenoid distributions. SARA results, classified the oils into: paraffinic (&gt;72%Hc, sat/arom: 2.61-3.68); paraffinic-naphthenic (63-70%Hc, sat/arom:1.77-2.31) and aromatic-naphthenic/aromatic-intermediate (&lt;60%Hc, sat/arom: &lt;1.44) oils, generated from source rocks of terrigenous-deltaic origin. Pristane/phytane and n-alkane/isoprenoid ratios delineated the oils into terrigenous (Type III kerogen) and mixed (terrigenous-marine) Type II/III kerogen organic matter source, deposited in oxidizing to transitional environment conditions. Thermal maturity parameters suggest the oil originated from source rocks of early to peak oil window maturity. Additionally, n-alkane/isoprenoid and saturate/aromatic ratios established evidence of biodegradation in a few samples across the depobelts. However, SARA compositions, n-alkane, and isoprenoid distributions of the oils critically permit preliminary assessment study, consequently allows a first-hand geochemical interpretation of the Niger Delta petroleum systems.
DOI: 10.17632/ncrjm2knc2.1
title: Comparative study of mineralogy and geochemical compositions of commercially imported bentonite and some locally derived bentonitic clays from Anambra Basin, Southeastern Nigeria

description: The study focused on the mineralogy and chemical properties of the bentonites recovered from the geological units of the Imo Shale and Ameki Formation, compared with commercially imported bentonite (CIC), for its suitability in the formulation of drilling mud. About 50 suspected bentonite clays were investigated, and properties of starting materials such as pH, conductivity, composition, grain size, degree of alteration, and filtration conditions were utilized during screening. The CIC and four samples that met the API specification for drilling mud were subjected to X-ray diffraction (XRD) and X-ray fluorescence (XRF) analyses. The kaolinite-type consists of 55 % kaolinite, 20 % quartz, 15 % K-feldspar, and 10 % hematite. The smectite-type range from 28-47 % kaolinite, 26-32 % quartz, 12-20 % nontronite. The CIC consists of 12 % quartz, 10 % K-feldspar, 12 % calcite, 41 % nontronite, and 25 % amorphous materials. The SPL15 is predominantly kaolinite, whereas SPL6, SPL8, and SPL11, including the CIC, are smectite-type with a significant amount of kaolinite, except the CIC. The XRF results, show Al2O3 (15.77-25.49) wt%, Fe2O3 (6.61-10.01) wt%, SiO2 (51.67-59.11) wt%, and loss on ignition (7.57-11.22) wt%. Nontronite, one of the smectite group of minerals, was identified from the XRD data. These were supported by elevated concentrations of Fe in some of the samples. More silica may be present in an amorphous phase in the CIC. Palygorskite and basanite are also present in some of the clays. The smectite-type contained an elevated Fe/Al ratio and is rich in Ca-smectite, which differs significantly from the CIC. Based on these results, the primary criteria for the formulation of drilling fluid, using mineralogy, and chemical compositions are achievable. A comparison with the processed CIC has revealed significant levels of compositional disparity/deficits in the local clay. Consequently, treatment/beneficiations with some additives may be necessary to achieve the desired compositions.
DOI: 10.6084/m9.figshare.13345151
title: GoogleLocationHistoryDataShapefiles.zip

description: In order to compare GLH data to travel diary data, GLH data were captured passively across five smartphone devices<b> </b>while two researchers followed prescribed itineraries. While the same five smartphone devices were not all carried on each prescribed itinerary, resulting in an uneven number of samples between devices, two researchers traveled together along prescribed itineraries following identical characteristics of travel. Arrival and departure times from all prescribed itinerary locations were measured empirically by self-report, thus completing the prescribed itineraries as travel diaries. This method afforded <i>a priori </i>knowledge of what the GLH data should be reporting as expected from the prescribed itineraries. In all, 12 unique itineraries were prepared, accounting information that GLH data provide, and to which can be compared: positions of locations, arrival and departure times, location dwell times, trip duration times, trip distances, travel modes, and trip geometries throughout different urban forms. <br> <br> Once GLH data were captured, the downloadable Keyhole Markup Language (KML) files were retrieved from the desktop Google Maps “Your Timeline” feature. The attribute information associated to the point and line shapefiles (SHP) derived from the KML files were then matched to the itinerary data by arrival and departure times within an error of ten minutes. We accepted an error of ten minutes as a reasonable limit for which we could unambiguously assume that the GLH data were sensing our prescribed itinerary travel and assign a match.<br> <br> The following analysis were done for each variable interaction of interest between smartphone device, travel mode and urban form. Mean location position errors were calculated by taking the mean Euclidean distance between the expected locations and the matched GLH data locations. Arrival and departure times were assessed using the root mean square error (RMSE). Similarly, trip duration times, trip distances, and location dwell times were assessed by the normalized RMSE to account for the differences in range for each interaction subset. Finally, GLH data trip geometries were assessed using the mean Hausdorff distance. The Hausdorff distance is a measure of the maximum distance from a point in set A to its nearest point in set B. In other words, of all the shortest distances from each point in set A to points in set B, it is the maximum of those distances. Since GLH data trip geometries were given as linestrings, we converted the linestrings to point sets for computing Hausdorff distances. This was done by generating points along linestring geometries. An interval of one meter between points was chosen as a distance small enough to account for the geometric variation in trip geometry for all scales of travel. The mean Hausdorff distances were then calculated for each interaction subset of travel mode and urban form.
DOI: 10.25345/c5121w
title: MassIVE MSV000086569 - Selective and Noncovalent Targeting of RAS Mutants for Inhibition and Degradation
title: Activating mutants of RAS are commonly found in many human cancers, but to date selective targeting of RAS in the clinic has been limited to KRAS(G12C) through covalent inhibitors. Here, we have developed a monobody, termed 12VC1, that recognizes the active state of both KRAS(G12V) and KRAS(G12C) up to 400-times more tightly than wild-type KRAS. Affinity purification were performed on PATU8902 and H358 cell lines that contain KRAS(G12V) and KRAS(G12C), respectively, but not from growth factor stimulated HEK293T cells containing only wild-type RAS. The mass spectrometric data was acquired in data dependent mode to show the clear enrichment of KRAS in the 2 cell lines that carry the mutated RAS. In addition, a targeted analysis was performed for the peptide carrying the G12V mutation as well as the wild type KRAS peptide to further verify enrichment of only the KRAS mutant.
DOI: 10.17632/kn726mznn3.4
title: F.Moribe_Supporting Dataset_20201205

description: The data for the figures in the manuscript
DOI: 10.17632/gkpwngy65h.1
title: Structural studies of Cardiovirus 2A protein reveal the molecular basis for RNA recognition and translational control
DOI: 10.17632/9tz8bm68jp.1
title: Chiral fungicide penconazole: absolute configuration, stereoselective bioactivity, toxicity, and environmental behavior in apple

description: Chiral pesticides are existing two mirror images called enantiomers. In spite of their similar elements and structures, enantiomers of chiral pesticides were reported that could have different environmental behavior, bioactivities, toxicities, and metabolic characteristics when exposure of them to nature. Penconazole is a systemic fungicide of the triazole family. Up to now, the absolute configuration is undetermined. The bioactivity and toxicity of penconazole at stereomeric level have not been reported. In the present study, the analysis method of penconazole enantiomers by UPLC-MS/MS was optimized and a rapid quantitative analytical method was established. The work down systematically explored the absolute configuration, bioactivity, ecotoxicity, and environmental behavior of chiral fungicide penconazole. The absolute configuration of penconazole was confirmed by electronic circular dichroism (ECD). The acute toxicity toward Daphnia magna (Daphnia magnastraus). The enantioselective biological activities of penconazole enantiomers and raceme against four target pathogenic fungi, Alternaria alternate, Botryosphaeria dothidea, Colletotrichum gloeosporioides and Fusarium oxysporum. Stereoselective degradation test of penconazole in apple was conducted with bagging and non-bagging treatment among three regions in China. This results are expected to promote penconazole enantiomers application to improve pesticide effectiveness and to alleviate environmental pollution. And More accurate risk assessment will be analyzed to guarantee food security. The two stereoisomers of penconazole were separated by UPLC-MS/MS system with a Lux Cellulose-2 column (150 mm ×4.6 mm, 5 μm). 0.1% formic acid in methanol and 10 mmol/L ammonium acetate in water as the mobile phase. The effectiveness of the mobile phase ratios, column temperatures and flow rates were evaluated. The mobile phase A/B: 80/20, column temperature: 30 °C, flow rate: 0.25 ml/min were eventually chosen. The retention time of penconazole stereoisomers was about 8 min, less than half of previous detection time, and the RS was 1.75 indicating completely separation of penconazole stereoisomers. The absolute configuration of penconazole stereoisomers was confirmed by comparing experimental circular dichroism (CD) spectra with theoretical electronic circular dichroism (ECD) spectra. The three apple-producing areas in China (Liaoning province, Shandong province, Shanxi province) were picked on as open filed location. The fungicidal activity of penconazole and its stereoisomers were evaluated toward four target pathogens: Alternaria alternate, Botryosphaeria dothidea, Colletotrichum gloeosporioides and Fusarium oxysporum, which were cultivated in PDA medium. The acute toxicity tests of rac-penconazole and its two stereoisomers were carried out with Daphnia magna under the Test guidelines on environmental safety assessment for chemical pesticides: Daphnia magna acute immobilization test.
DOI: 10.17632/tx76zz3gt3.1
title: Filterable bacterioplankton able to degrade microcystin_raw DATA

description: The available data refers to the manuscript entitled Filterable bacterioplankton able to degrade microcystin which gather information regarding MC-LR concentration from biodegradation assays, bioinformatics/16S metagenomics for characterization of bacterial community potentially involved in MC biodegradation.
DOI: 10.17632/c86ynrjrnb.1
title: Data for: Automated Replacement Scheme of DC Transformer Bushing Based on Laser Scanning Profile: Design and Experiment

description: This is the data we use in this article, including different radii, different angles, different number of profiles and single profile scanning data. We obtained these data by scanning cylindrical workpieces with a laser profile scanner installed at the end of the industrial robot. Among these files, README.txt introduces each file.
DOI: 10.17632/ppx6t5xty2.1
title: Bayesian capture-recapture density analysis of three large African carnivores in Madikwe Game Reserve: R code and data

description: The following capture histories are the result of collating three camera trap survey methods over an 8-month period. The events were condensed to produce 36 capture occasions from 249 capture occasions to account for individuals remaining at baited sites for extended periods. Focal species are leopards, Panther pardus (Table 1), spotted hyaena, Crocuta crocuta, (Table 2), and brown hyaena, Parahyaena brunnea (Table 3).
DOI: 10.17632/j4mvtjmp5j.1
title: Writing_vs_Tapping(Arabic_English)

description: This is the dataset reflects the recorded times that it took for 72 participants to transcribe an Arabic text, and 78 participants to transcribe an English text, both by paper and by smartphone. (*Note that Participant 48 in the English subgroup was identified as an outlier as times for smartphone entry were over 5 SD away from the mean.) All data points are times (in seconds). It was hypothesized, based on precursor research, that handwriting would be faster than smartphone entry for participants writing in their second language. This hypothesis was supported by this data. Also, the non-normal distributions of the English subgroups (the second language of the participants) is typical of research based on self-paced actions (in this case, self-paced writing). Both subgroups of the English data were positively skewed.
DOI: 10.17632/cg9dcr4kgv.1
title: Evaluation of Burnout, Stress and associated factors among interns in an Ethiopian teaching hospital

description: The data set for the research is included. The raw data is in the form of spss statistics data document and contains data used for analysis.
DOI: 10.17632/tkdhzrxjhw.1
title: Primary Data

description: There are two main hypotheses. The first one is to answer the phase of intrusions in Ertsberg Intrusion Complex and the second is to identify the petrogenesis and tectonic setting of the Ertsberg Intrusion Complex. Geochemical data (XRF,ICP_MS) showed that there are two phases of intrusion and high-k calc-alkaline to shoshonitic magmas were enriched by sedimentary components in post-collision setting. In the research paper, sample identifying was done detail for each sample in the megascopic study to understand the crosscutting relationship of the rocks. Moreover, the important one is to collect and identify the fresh samples. For the geochemistry study, major elements were used to identify the processes of magma using Harker variation diagram, SiO2 vs K2O diagram, and trace elements were used to identify the petrogenesis of magma and tectonic setting using Ta/Yb versus Ce/Yb diagram, [Y+Nb] vs Rb geotectonic discrimination diagram, Ce/P2O5-3*Zr-50Nb ternary diagram, and spider diagram. Furthermore, combining the trace elements and REE elements were used to identify the genetic magma and possible tectonic setting using CI Chondrite-normalized REE diagram and LILE vs HFSE diagram.
DOI: 10.17632/2vn54nsw9x.1
title: LINF_040010500

description: intraflagellar transport protein 139 | IFT139; Leishmania infantum
DOI: 10.17632/fj5n7hkc9d.1
title: LINF_040010800

description: spermidine synthase; Leishmania infantum
DOI: 10.17632/pt2zzysbvx.1
title: LINF_040011100

description: hypothetical protein - conserved; Leishmania infantum
DOI: 10.17632/58kcccyk7w.1
title: LINF_040011400

description: hypothetical protein - conserved; Leishmania infantum
DOI: 10.17632/3wyfznrp55.1
title: LINF_040012000

description: Axonemal dynein light chain; Leishmania infantum
DOI: 10.17632/4rsz3snvk5.3
title: Dataset of NGS-Phage display library of nanobodies derived from Indian desert camel (Camelus dromedarius L.)

description: We subjected to NGS methodology a fraction of our previously constructed phage display library (PDL) of nanobody (Nb) clones (Cl) for obtaining the dataset of Nbs NGS reads. This is the first phage display library of Nbs derived from the Indian desert camel and its initial preliminary characterization revealed functional Nbs against diverse Ags from infectious agents. Several Nb clones were isolated by panning against E. coli endotoxin and S. aureus β-hemolysin (an exotoxin), and were deposited, along with the library, in ICAR-Veterinary Type Culture Collection at Hisar (Haryana) (Accession no. VTCCMBA22 to VTCCMBA48). Some of these Nb clones were characterized for biochemical and functional features, and Sanger sequenced (GenBank accession no.: EU861212; KF990215; KF990216; KF990217; GU014816). For NGS, the cryo-preserved transformants library was revived to extract the Nb-encoding VHH (inserts)-pHEN4 (vector) DNA pool. The DNA sample was used for amplifying VHH pool by PCR. The VHH amplicons band was gel-purified and subjected to NGS using Illumina MiSeqTM platform. ‘Nextra XT micro V2 Index’ kit was used for the Nb library DNA sample sequencing, with the adaptors: ‘i7’ (N706: TAGGCATG) and ‘i5’ (S517: GCGTAAGA). The raw data of NGS reads was submitted to NCBI ‘Sequence Reads Archive’ repository. Raw NGS data ‘Read 1’ [Phage lib NGS seqs-ABT-28_S24_L001_R1_001.fastq (1)] and ‘Read 2’ [Phage lib NGS seqs-ABT-28_S24_L001_R2_001.fastq (2)] files were generated by Illumina® MiSeq™ system. Preliminary examination using CLC Genomics Workbench 12.0 revealed 91,073 sequence reads in each file. Quality score ‘Q30’ (1 in 1000 bases incorrect) at 2x150 bp was &gt;80%, i.e., acceptable. A total read count was 182146 (matched= 179591; unmatched=2555), with average read length of 130.33 bases and a total of 23.74 Mb. Of 179591 matched reads, 142004 were paired reads and 37587 broken paired reads. These data can be accessed at SRA RunSelector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA516512 Three consensus contigs were present in the NGS reads. Contig 1 and -2 have CDR1, -2 and -3, whereas contig 3 being of shorter length, has only CDR 1 and -2. The contig 1 CDR1, -2 and -3 are identical to the T. evansi VSG binder Nb clones isolated from the library and sequenced by Sanger’s technique. The contig 2 CDR 1 and -2 are identical and CDR3 highly similar to the LPS-binder Nb clones previously isolated from the library. VHH hallmark amino acids are present in all the contigs. Blastn of contig 1-3 consensus sequences revealed homologies to sequences of Nbs specific to E. coli LPS, Trypanosoma evansi variable surface glycoprotein (VSG), and several other important antigens of veterinary and human pathogens. Anti-LPS Nb clones are highly similar to NGS sequence reads. NGS reads guided the isolation of anti-T. evansi RoTat1.2 VSG Nb clones. This approach could be used for the search of other Nbs and templates for Nb reformatting and Nb-based drug designing.
DOI: 10.15156/bio/sh1208939.09fu
title: SH1208939.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1208940.09fu
title: SH1208940.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1208941.09fu
title: SH1208941.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.