cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28796141.v1
title: Supplementary Material for: Impact of Anatomically Defined Retinal Zones on Ultrawide-Field Fluorescein Angiography Nonperfusion Measurements in Diabetic Retinopathy

description: Purpose: To determine the effect of retinal zone placement on nonperfusion index (NPI) measurements using ultrawide-field fluorescein angiography (FA) in eyes with diabetic retinopathy (DR) and assess its association with disease progression
Methods: The study analyzed retinal periphery zones based on fluorescein angiography findings in 18 eyes without DR to standardize anatomical boundaries. NPI measurements were then conducted on a separate set of 285 eyes with DR. Eyes were grouped by NPI levels, and Cox regression was used to examine the association between nonperfusion in the mid-peripheral and far-peripheral retina and progression to proliferative diabetic retinopathy (PDR).
Results: The retinal zones defined by fluorescein angiography (FA-defined zones) were similar in size to a standard 15 mm radius circle centered on the optic disc (14.98 ± 1.40 mm). However, when compared to circles centered on the fovea, the fovea-centered circles were displaced temporally by an average of 3.94 mm, leading to a significant overestimation of the anatomic nasal far periphery (79.10 ± 13.60 mm² vs. 36.91 ± 10.52 mm², p &lt; 0.001). Among the eyes with at least one year of follow-up (N = 121, 42.5%), those with medium and high mid-peripheral nonperfusion index (NPI) had a significantly higher risk of progression to PDR (HR, 3.44; 95% CI, 1.36–8.70; p = 0.009) when using FA-defined zones. No significant association was found when using fovea-centered zones (HR, 1.39; 95% CI, 0.56–3.46; p = 0.476).

Conclusion: While the diameter of the retinal measurement zones did not differ significantly, the location of the zone center had a substantial impact on NPI measurements. Using FA-defined zones centered on the optic disc led to lower mid-peripheral and higher far-peripheral NPI measurements, providing a more accurate prediction of progression to PDR compared to fovea-centered zone
DOI: 10.6084/m9.figshare.9747473.v1
title: Metabolite BridgeDb ID Mapping Database (20190829)

description: BridgeDb ID mapping database for metabolites, using HMDB 4.0 (Release of 16 Jan. 2019), ChEBI 178 (Release of 01 Aug 2019), and Wikidata (29 Aug 2019) as data sources.<br>Quality control was performed with BridgeDb (2.3.3).* Small update to InchiKey mappings: only saving mappings as is, without quotation marks ("") .
DOI: 10.17632/rn96hp5kw4
title: TP53

description: Data repository for the referenced manuscript.

All generated and optimized networks for TCGA and CCLE can be found in the corresponding folders. The input files have been included as a Shiny App .zip file, which combined with the cited GitHub repository below, provide a full Shiny App with GUI to reproduce the results. Results concerning the ML and community detection signatures plus survival data used are provided also in the corresponding folders.
DOI: 10.6084/m9.figshare.14307282.v1
title: Numerical simulation of steel-concrete composite beams: updated strategies of finite element modeling

description: abstract: The use of steel-concrete composite beams allows the best properties of these materials to be explored, resulting in more economical solutions. Many researchers have studied the behavior of composite beams from different strategies of numerical modeling, and some of these are presented in this article. In this context, the present work proposes the construction of a tridimensional numerical model using ANSYS software, version 19.2, with current-technology elements and compatible material models. For the simulation of concrete behavior, two models have been used: the first, denominated DP-CONCRETE, is a native ANSYS model, available in the more recent versions of this software; and the second, denominated USERMAT, is a customizable model that was developed based on Ottosen criterion. The results obtained with these models for the analyzed beams presented a good correlation with the experimental results and with numerical results from previous works.
DOI: 10.6084/m9.figshare.23669304.v2
title: Data for "Multi-site evaluation of stratified and balanced sampling of soil organic carbon stocks in agricultural fields"

description: Soil organic carbon measurements at eight commercial U.S. Midwest fields. Data is split into two CSV files: measurements.csv: site: name of site location_id: identifier for location within site, not necessarily unique across sites sample_depth_min: top depth of sample segment (cm) sample_depth_max: bottom depth of sample segment (cm) SOCc: soil organic carbon concentration (%) BD: bulk density (g/cm<sup>3</sup>) locations.csv: site: name of site location_id: identifier for location within site, not necessarily unique across sites X: longitude, in decimal degrees Y: latitude, in decimal degrees See Geoderma publication for detailed measurement methodology and additional information.
DOI: 10.6084/m9.figshare.27217305.v1
title: Parameters_Tables.xlsx

description: This parameters includes distribution networks, equipment, EVs, RE output and load demands, energy prices, and joint trading mechanism.
DOI: 10.6084/m9.figshare.7228307.v3
title: Cervical vagotomy and electroneurogram (VENG) approach in near-term fetal sheep

description: Little is known about the vagus nerve activity in near-term fetuses. The chronically instrumented unanesthetized fetal sheep model is used to study human fetal physiology, because it permits chronic instrumentation with catheters and electrodes, which allow repetitive blood sampling, substance injection and recording of bioelectrical activity. We describe the procedures required to manipulate the vagus nerve activity in this model.<br>We refer the reader to the related published report in JoVE (doi: 10.3791/52581), available in full text via PubMed Canada and as video here.<br>
DOI: 10.11583/dtu.19780570.v1
title: xyz files of the QM9 molecules

description: This zipped file contains the coordinates of the QM9_G4MP2 molecules as xyz files. This are optimized in B3LYP/6-31G(2df,p) level of theory. This item is part of the collection MultiXC-QM9 with DOI: 10.11583/DTU.c.6185986
DOI: 10.17632/4h67m9wcvp
title: Análisis de riesgo de la Jefatura Tecnologías de la Información y Comunicación del Registro de la Propiedad del Cantón Cuenca

description: Considerando la problemática, se tiene como objetivo de esta investigación realizar un análisis de riesgos del inventario de los activos informáticos del RPCC. Con los resultados obtenidos se establecerán controles que mitiguen los riesgos. Lo cual evitara desastres tecnológicos de los sistemas informáticos. Para el desarrollo de esta investigación se utilizará un análisis analítico-descriptivo a través de técnicas de indagación y análisis. Además, esta investigación servirá para el diseño de un Sistema de Gestión de Seguridad de la Información y Plan de Contingencia que requiere la institución a futuro.
DOI: 10.17632/gdvf27rnx3
title: Dataset for: 'Optimisation of Pumping and Storage Design Through Iterative Hydraulic Adjustment for Minimum Energy Consumption'

description: This dataset comprises of the Algorithms, EPANET networks and results from the manuscript 'Optimisation of Pumping and Storage Design Through Iterative Hydraulic Adjustment for Minimum Energy Consumption' submitted to the Urban Water Journal
DOI: 10.17632/hz38st5gc6
title: Data for Gender Employment Equity

description: This dataset contains the empirical data associated with the article: Educational Expansion and Economic Development: Do They Necessarily Promote Gender Employment Equity? Evidence from Job Satisfaction in Chinese Universities
DOI: 10.6084/m9.figshare.19403330.v1
title: Hmms

description: Hmms utilized
DOI: 10.6084/m9.figshare.20485569.v2
title: Dataset for sample size for postharvest quality traits of ‘Palmer’ mangoes

description: The objective of this study was to determine the most efficient sample size required to estimate the mean of postharvest quality traits of ‘Palmer’ mangoes harvested in two growing seasons. A total of 50 mangoes were harvested at maturity stage 2, in winter (June 2020) and spring (October 2020), and evaluated for weight, length, ventral and transverse diameter, skin and pulp L*, C* and hº, dry matter, firmness, soluble solids (SS), titratable acidity (TA) and the SS/TA ratio. Raw data and estimation of sample size for each quality trait in each growing season are attached. According to the results, the coefficient of variation (CV) of fruit quality traits ranged from 2.1% to 18.1%. The highest CV in both harvests was observed for the SS/TA ratio, while the lowest was reported for pulp hº. In order to estimate the mean of physicochemical traits of ‘Palmer’ mangoes, 12 fruits are needed in the winter and 14 in the spring, considering an estimation error of 10% and a confidence interval of 95%. TA and the SS/TA ratio required the highest sample size, while L* and hº required the lowest sample size. In conclusion, the variability was different among physicochemical traits and seasons, implying that different sample sizes are required to estimate the mean of different quality traits in different growing seasons.
DOI: 10.6084/m9.figshare.23607636.v1
title: patient21.rar

description: A Patient with fundus images that taken by Ret-cam.
DOI: 10.17632/ckz9mtgrjj
title: Genotype data for a set of 163 worldwide populations

description: Here is a combined dataset of genetic data on 2,643 individuals from 163 worldwide human populations. These genotypes were all generated on Illumina chips (550, 610, 660) for multiple different studies.  The two main papers that this dataset was compiled for are: Hellenthal, et al 2014 A Genetic Atlas of Human Admixture History, Science; and Busby, et al 2015 The role of recent admixture in forming the contemporary West Eurasian genomic landscape, Current Biology.

The data are in PLINK format and the BusbyWorldwidePopulations.csv file outlines where the different datasets come from. Note that because these two datasets were combined together, not all populations are typed on the same set of SNPs. We have included genotype data on 523,443 SNPs, of which 441,038 are genotyped on at least 97.5% of individuals.

Therefore, additional QC steps are required to filter this set down to high quality calls, depending on the subset of samples that are required. Complete information about the populations used is available in the various publications that are outlined in the associated paper.

Note that these same populations are available elsewhere and this dataset represents that compiled for the above mentioned papers.

UPDATE 11/11/2019
Thanks to some heroic work by  Kristján Helgi Swerford Moore at DECODE, I have now updated the population and sample information to more accurately and verbosely label the individuals.
DOI: 10.6084/m9.figshare.15911973.v1
title: Cereal grain mineral micronutrient and soil chemistry data from GeoNutrition surveys in Ethiopia and Malawi

description: Through the GeoNutrition project, 1352 georeferenced staple cereal grain and soil sample pairs from Ethiopia’s Amhara, Oromia, and Tigray regions and 1812 sample pairs from Malawi were collected from farms under a rainfed and smallholder farming systems. Field metadata was collected using KoBoCollect, an open-source georeferenced mobile data collection application. The elemental concentration in the staple cereals and soil properties were determined using standard wet chemistry digestion, extraction, and analysis procedures. A total of 29 cereal grain elemental concentrations from Ethiopia and Malawi, and 84 and 69 soil elemental concentrations or fractions from Ethiopia and Malawi, respectively were analysed and reported in these datasets. The major staple cereal crops sampled from Ethiopia included barley (n=175), finger millet (n=37), maize (n=290), sorghum (n=135), Teff (n=362), and wheat (n=325). Staple cereals collected from Malawi included maize (n=1608), pearl millet (n=32), rice (n=54) and sorghum (n=117). The datasets are presented in a workbook or zipped comma separated value (CSV) file for Ethiopia and Malawi. These datasets may be of interest to researchers, public institutions and non-governmental organisations working in the fields of agriculture, public health and nutrition, environmental protection, and fertiliser development.
DOI: 10.6084/m9.figshare.22691236.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.26928661.v1
title: Tracking redox state in mineralized hydrothermal systems: U µXAS and U-Pb carbonate dating - supplementary datasets

description: Full U-Pb geochronology data for standards and unknowns; and normalized synchrotron U L<sub>3</sub> edge XANES data from a mineralized carbonate sample. Analyzed sample is from an alkalic porphyry-epithermal Cu-Mo-W-Au-Ag system located in the Dawson Range, Yukon, Canada (Revenue-Nucleus).
DOI: 10.6084/m9.figshare.29146358.v2
title: Data of ticks in the current study.xlsx

description: Tick-borne rickettsiosis has posed a significant threat to Egypt, with various pathogenic <i>Rickettsia</i> species being reported. In this study, 134 ticks were collected from camels in Esna city, Luxor, Egypt, and all were identified as <i>Hyalomma dromedarii</i> through both morphological and molecular techniques. Using specific primers targeting the citrate synthase (<i>gltA</i>), outer membrane protein A (<i>ompA</i>), and 17kD antigen (17kDa) genes, <i>Rickettsia japonica</i> was detected via conventional and nested PCR assays. Remarkably, two samples tested positive for <i>R. japonica</i> across all three genes, indicating a prevalence of 1.5%. Phylogenetic analysis based on the <i>gltA</i>, <i>ompA</i> and 17kDa genes confirmed the presence of <i>R. japonica</i> within <i>H. dromedarii</i> ticks. This is the first reported detection of <i>R. japonica</i> in Egypt. These findings highlight the urgent need to investigate the origin and spread of <i>R. japonica</i> in the country, and underscore the importance of continuous surveillance and data collection on lesser-known pathogens circulating in ticks as part of Egypt's public health efforts to manage tick-borne diseases.
DOI: 10.6084/m9.figshare.20494971.v1
title: GDP Growth & Worldwide Governence Indicators ASEAN

description: This research journal is intended to find out how the influence of Government Performance and Institutional Quality has an effect on Economic Growth in the ASEAN Region. With the government's performance and the quality of institutions, it is expected to encourage economic growth in ASEAN countries. The indicators to measure governance are governance indicators issued by the World Bank including Control Corruption, Political Stability and Absence of Violence/Terrorism, Rule of Law, Government Effectiveness, and Regulatory Quality. This study uses panel data regression with the selected model is fixed effect.
DOI: 10.6084/m9.figshare.24999149.v2
title: Navas-Olive, Rubio, et al. (2023). Figure 3 - data

description: <b>Figure 3. Influence of number of channels and analysis window on training performance. a) </b>Final validation F1-score of all trained models depending on the number of input channels: one (pyramidal channel; see methods), three (pyramidal channel and extreme channels), or eight (all channels of the probe). <b>b)</b> Same as panel a), but depending on the time window used for analysis.
DOI: 10.6084/m9.figshare.25001858.v1
title: Australian ash and soil leachate data and scripts supporting the article "Combustion completeness and sample location determine wildfire ash leachate chemistry."

description: The dataset comprises a suite of physical and chemical data extracted from leachates of wildfire ashes and soils from sites in southwest and southeast Australia. Please see the manuscript, and the .README file for more details.
DOI: 10.6084/m9.figshare.26879344.v1
title: HIV PCP clinical raw data excel.xlsx

description: A total of 99 HIV-infected PCP patients and 61 HIV-infected patients diagnosed with non-PCP pneumonia between March 2019 and December 2022 were enrolled. The raw data of clinical symptoms and laboratory test results was collected in the excel table.
DOI: 10.6084/m9.figshare.830419.v1
title: stepping stone analyses estimating marginal likelihoods for Bayes Factor tests

description: stepping stone analyses estimating marginal likelihoods for Bayes Factor tests. Input file names ending with ss correspond to the normal MrBayes analyses in Appendix S2, but run under the Stepping Stone approach. The Excel file includes mean and standard deviation estimates of the marginal log likelihood values for all Bayes Factor Tests.
DOI: 10.6084/m9.figshare.c.3870520_d2.v1
title: Additional file 2: Table S1. of A split ubiquitin system to reveal topology and released peptides of membrane proteins

description: Primers used in this study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.13190708.v5
title: Significant variants / genes

description: The variants, and linked genes, that are significantly associated with body weight at multiple ages, in both diet-independent and diet-dependent manners, are enumerated in these files.
DOI: 10.6084/m9.figshare.28034666.v1
title: A new global terrestrial evapotranspiration dataset from multi-datasets fusion based on Bayesian model averaging covering 1980-2020 (BMA-ET)

description: A long-term (1980-2020) global terrestrial evapotranspiration (ET) product with a spatial resolution of 0.5 degree and 1 degree. This is a merged product from thirty ET products using the Bayesian model averaging (BMA) method. These include four main types: remote sensing–based, machine learning–based, reanalysis-based, and land-surface-model-based.<br>Data is provided here for two types of resolutions: 0.5 degrees (ET_BMA_1980_2020_05degree.nc) and 1 degree (ET_BMA_1980_2020_1degree.nc). The dataset is stored in NetCDF format, containing the variable ET, representing terrestrial evapotranspiration, produced in millimeters (mm) as a unit. There are three dimensions included in the dataset: longitude, latitude, and time, with the longitude ranging from -180E to 179.5E, the latitude from -89.75N to 89.75N. Complete time coverage is from January, 1980, to December, 2020.
DOI: 10.17632/hxz5n5z6n6
title: The Impact Mechanism of Site Substitution Intention Among Creative Tourists: A Qualitative and Quantitative Study of the “Community Art Festival” in Tielu Third Village

description: The Impact Mechanism of Site Substitution Intention Among Creative Tourists: A Qualitative and Quantitative Study of the “Community Art Festival” in Tielu Third Village
DOI: 10.17632/jv32cvpn3r
title: CAD5 Brie Library Quality Control

description: Whole-genome mouse CRISPR-KO Brie library in CAD5 cells - quality control run.
DOI: 10.6084/m9.figshare.24030648.v1
title: Predictors of Birth Trauma

description: A multimethod study exploring predictors of birth related PTSD in a sample of 142 Australian women.
DOI: 10.6084/m9.figshare.4649830.v1
title: Supplementary Material for: Clinical Relevance of Pleural Effusion in Patients with Pulmonary Embolism

description: <b><i>Background:</i></b> Data regarding pleural effusion due to pulmonary embolism (PE) are limited. <b><i>Objectives:</i></b> The aim of this study was to investigate the clinical characteristics of PE patients with pleural effusion caused by PE. <b><i>Methods:</i></b> Patients with PE were retrospectively analyzed and divided into 2 groups based on computed tomography: a group with pleural effusion due to PE (effusion group) and a group without pleural effusion (control group). Clinical characteristics were compared between the 2 groups. <b><i>Results:</i></b> The study population consisted of the effusion group (<i>n</i> = 127) and the control group (<i>n</i> = 651). Serum C-reactive protein (CRP) level was significantly higher in the effusion group than in the control group. The percentages of high-risk Simplified PE Severity Index (57 vs. 47%, <i>p</i> = 0.008), central PE (84 vs. 73%, <i>p</i> = 0.013), right ventricular dilation (45 vs. 36%, <i>p</i> = 0.053), and pulmonary infarction (40 vs. 8%, <i>p</i> &lt; 0.001) were higher in the effusion group than in the control group. Multivariate analysis demonstrated that pulmonary infarction (odds ratio [OR] 6.20, 95% confidence interval [CI] 3.49-10.91, <i>p</i> &lt; 0.001) and CRP level (OR 1.05, 95% CI 1.101-1.09, <i>p</i> = 0.023) were independent predictors of pleural effusion due to PE. The presence of pleural effusion was not a predictor of short-term outcomes or length of hospital stay. <b><i>Conclusions:</i></b> Patients with more severe PE are likely to have pleural effusion caused by PE. However, pleural effusion was not a proven predictor of short-term outcome or length of hospital stay. Pulmonary infarction and CRP levels were independent risk factors for the development of pleural effusion.
DOI: 10.6084/m9.figshare.5677702.v2
title: A new Oligo–Miocene marsupial lion from Australia and revision of the family Thylacoleonidae

description: <i>Wakaleo schouteni</i> sp. nov., a dog-sized marsupial lion (Thylacoleonidae), is described from late Oligocene to early Miocene sediments of the Riversleigh World Heritage Area, Queensland, Australia. Fossils of this new species include a near-complete cranium, dentaries and postcrania. This species is the second thylacoleonid known from late Oligocene sediments. The other, <i>Priscileo pitikantensis</i> Rauscher, 1987, from the Etadunna Formation of South Australia, is known from teeth, part of a palate and postcrania. <i>Wakaleo schouteni</i> exhibits cranial and dental morphology characteristic of species of <i>Wakaleo</i> but possesses a relatively plesiomorphic upper dental formula (i.e. three premolars and four molars) within Thylacoleonidae that was formerly regarded to be diagnostic for species of the genus <i>Priscileo</i>. The holotype and humerus of <i>P. pitikantensis</i> have been compared with the new <i>Wakaleo</i> material described here and found to demonstrate conspicuous similarities in morphology of the M<sup>2</sup> and the humerus. In the absence of other generically diagnostic features, <i>Priscileo</i> is here regarded to be a junior synonym of <i>Wakaleo.</i> Smaller size and relatively minor morphological differences in the proximal humerus of <i>W. pitikantensis</i> comb. nov. distinguish it at the specific level from <i>W. schouteni</i>. Phylogenetic analysis of thylacoleonids recovers <i>Wakaleo</i> as a monophyletic clade. Both <i>Wakaleo pitikantensis</i> comb. nov. and <i>W. schouteni</i> are recovered as plesiomorphic sister taxa to other species of the genus. <i>Wakaleo pitikantensis</i> and <i>W</i>. <i>schouteni</i> extend the temporal range for this genus back into the late Oligocene. Body weight for <i>W. schouteni</i>, based on total skull length, is estimated to be ∼23 kg. http://zoobank.org/urn:lsid:zoobank.org:pub:CA8A8EC8-4F66-4F1E-81DC-240A0C4080BE