cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5125261.v1
title: Supplementary Material for: Cognitive Patterns in Relation to Biomarkers of Cerebrovascular Disease and Vascular Risk Factors

description: <b><i>Background:</i></b> Risk factors for vascular cognitive impairment (VCI) are the same as traditional risk factors for cerebrovascular disease (CVD). Early identification of subjects at higher risk of VCI is important for the development of effective preventive strategies. In addition to traditional vascular risk factors (VRF), circulating biomarkers have emerged as potential tools for early diagnoses, as they could provide in vivo measures of the underlying pathophysiology. While VRF have been consistently linked to a VCI profile (i.e., deficits in executive functions and processing speed), the cognitive correlates of CVD biomarkers remain unclear. In this population-based study, the aim was to study and compare cognitive patterns in relation to VRF and circulating biomarkers of CVD. <b><i>Methods:</i></b> The<b> </b>Barcelona-AsIA Neuropsychology Study included 747 subjects older than 50, without a prior history of stroke or coronary disease and with a moderate to high vascular risk (mean age, 66 years; 34.1% women). Three cognitive domains were derived from factoral analysis: visuospatial skills/speed, verbal memory and verbal fluency. Multiple linear regression was used to assess relationships between cognitive performance (multiple domains) and a panel of circulating biomarkers, including indicators of inflammation, C-reactive protein (CRP) and resistin, endothelial dysfunction, asymmetric dimethylarginine (ADMA), thrombosis, plasminogen activator inhibitor 1 (PAI-1), as well as traditional VRF, metabolic syndrome and insulin resistance (homeostatic model assessment for insulin resistance index). Analyses were adjusted for age, gender, years of education and depressive symptoms. <b><i>Results:</i></b> Traditional VRF were related to lower performance in verbal fluency, insulin resistance accounted for lower performance in visuospatial skills/speed and the metabolic syndrome predicted lower performance in both cognitive domains. From the biomarkers of CVD, CRP was negatively related to verbal fluency performance and increasing ADMA levels were associated with lower performance in verbal memory. Resistin and PAI-1 did not relate to cognitive function performance. <b><i>Conclusion: </i></b>Vascular risk factors, and markers of inflammation and endothelial dysfunction predicted lower performance in several cognitive domains. Specifically, cognitive functions associated with CRP are typically affected in VCI and overlap those related to VRF. ADMA indicated a dissociation in the cognitive profile involving verbal memory. These findings suggest that inflammation and endothelial dysfunction might play a role in the predementia cognitive impairment stages.
DOI: 10.6084/m9.figshare.21088066.v1
title: HIV multiomics microbiome data (16S)

description: 16S microbiome data from 97 HIV patients from the COCOMO cohort. Used in HIV multi-omics project
DOI: 10.6084/m9.figshare.28737293.v1
title: LC-mass analysis of R. officinalis extract

description: this dataset contains LC-MS raw data and analyzed results for <i>Rosmarinus officinalis</i> extract. The extract was prepared and analyzed to identify major phytochemicals, including phenolic acids and flavonoids.The LC-MS analysis was performed under negative ionization mode using a C18 column.<br><br>
DOI: 10.6084/m9.figshare.17134787.v1
title: BITUMEN DATA

description: Matlab codes + data of measured water properties
DOI: 10.6084/m9.figshare.22674010.v1
title: Table III - Cicchetti’s classification of test and retest

description: <strong>Cicchetti’s classification of test and retest</strong>
DOI: 10.6084/m9.figshare.24885558.v1
title: Supplementary Material for: Bladder-Adherent Primary Appendiceal Carcinoma Masquerading As A Carpeting Rectal Lesion Detected By A Fecal Immunochemical Test: Case Report

description: Introduction: Primary appendiceal carcinoma is rare and comprises up to 1% of all colorectal malignancies. Its invasion into adjacent organs, such as the bladder and rectum, especially as a presenting characteristic, is even less common. 

Case presentation: A 75-year-old asymptomatic male tested positive on a screening fecal immunochemical test. Colonoscopy showed a rectosigmoid tumor and normal appendiceal orifice. Staging MRI surprisingly showed that the cancer was, in fact, of appendiceal origin, coursed posteriorly to invade the rectosigmoid and form adhesions with the urinary bladder. Staging CT did not show metastatic disease. Low anterior resection, en bloc appendectomy and right hemicolectomy were performed along with cystectomy and ileal conduit. Hematoxylin and Eosin stains showed appendiceal adenocarcinoma invading through the appendiceal wall into the rectal muscularis and submucosa. Features of neuroendocrine carcinoma were not identified on immunohistochemistry. This was a colonic type of adenocarcinoma of the appendix. 

Conclusion: This is a rare case of appendiceal carcinoma invading the rectum and presenting as a positive screening fecal immunochemical test in an asymptomatic individual. We effectively demonstrate the use of preoperative MRI to identify the appendiceal origin of the tumor, as well as to demonstrate the extent of tumor spread, which assisted with operative management and treatment planning.
DOI: 10.6084/m9.figshare.6007340.v6
title: Mapping CHIKV .bam files from each sample and negative controls

description: CHIKV genomes sequenced from clinical samples.
DOI: 10.6084/m9.figshare.14805792.v1
title: Supplementary Material for: Curcumin Affects Leptin-Induced Expression of Methionine Adenosyltransferase 2A in Hepatic Stellate Cells by Inhibition of JNK Signaling

description: <b><i>Introduction:</i></b> Obese patients are often accompanied by hyperleptinemia and prone to develop liver fibrosis. Accumulating data including those obtained from human studies suggested the promotion role of leptin in liver fibrosis. The remodeling of the DNA methylation is an epigenetic mechanism for regulating gene expression and is essential for hepatic stellate cell (HSC) activation, a key step in liver fibrogenesis. Leptin increases the expression of methionine adenosyltransferase 2A (MAT2A) which is associated with DNA methylation and HSC activation. Curcumin, an active polyphenol of the golden spice turmeric, inhibits leptin-induced HSC activation and liver fibrogenesis. Thus, the present research aimed to investigate the influence of curcumin on the roles of leptin in MAT2A expression in HSCs. <b><i>Methods:</i></b> The in vivo experiments were conducted by using leptin-deficient obese mice. The gene expressions were examined by Western blot, real-time PCR, promoter activity assay, and immunostaining analysis. <b><i>Results:</i></b> Curcumin reduced leptin-induced MAT2A expression. JNK signaling contributed to leptin-induced increase in MAT2A level, which could be interrupted by curcumin treatment. Curcumin inhibited leptin-induced MAT2A promoter activity by influencing MAT2A promoter fragments between −2,847 bp and − 2,752 bp and between −2,752 bp and +49 bp. The effect of curcumin on leptin-induced MAT2A expression paralleled the reductions in leptin-induced activated HSCs and liver fibrosis. <b><i>Conclusion:</i></b> These results might have implications for curcumin inhibition of the liver fibrogenesis in obese patients with hyperleptinemia.
DOI: 10.6084/m9.figshare.27284076.v1
title: Supplementary Material for: Feasibility of telementoring during robot-assisted minimally invasive esophagectomy.

description: Introduction

Telementoring could increase the quality, reduce the time, and increase cost efficiency of the proctoring program for robot-assisted minimally invasive esophagectomy (RAMIE). However, feasibility is unclear as no studies assessed telementoring for RAMIE. 

Methods

The feasibility of telementoring was assessed during the thoracic part of RAMIE procedures in three high-volume centers. RAMIEs were performed by trained surgeons, proctored by two experts. The primary outcome was impact of the technology on conveying and understanding instructions.
 
Results

Between December 2021 and December 2022, nine RAMIE procedures were proctored using the telementoring. Overall quality of the telementoring technique was scored good to excellent (median score: good). The vast majority of the 24 proctor instructions were conveyed and understood fluently (n=21, 96%). Most proctor instructions were aimed at improving surgical exposure (n=9, 38%). The major point of criticism was the use of the audio as the communication through the headset of the performing surgeon was not accessible by the complete team. 

Conclusion

Telementoring is deemed feasible for proctoring trained RAMIE surgeons after onsite proctoring. Technical improvements with regard to audio technology are warranted for broad implementation, especially in earlier training settings. The role of telementoring in the training pathway of learning surgeons needs clinical validation. 

Study registration number: 21/322
Date of registration: 14-5-2021
DOI: 10.6084/m9.figshare.12229349.v1
title: Kallisto output

description: This data set contains trimmed and psudoaligned sequence files and transcript quantifications generated by the kallisto application for each experimental sample. Kallisto produces three output files per sample: 1. An abundances.h5 HDF5 binary file containing run info, abundance esimates, bootstrap estimates, and transcript length information length. This file can be read in by the sleuth program. 2. An abundances.tsv plaintext file of the abundance estimates. Please use the --plaintext mode to output plaintext abundance estimates. Alternatively, kallisto h5dump can be used to output an HDF5 file to plaintext. The first line contains a header for each column, including estimated counts, TPM, effective length. 3. A run_info.json file containing information about the run. This data set contains an abundances.h5, an abundances.tsv, and a run_info.json file for each of the 37 samples in our study.
DOI: 10.6084/m9.figshare.24129996.v1
title: State Reconciliation Defects in Infrastructure as Code

description: This repository contains all materials to reproduce the results in the paper titled 'State Reconciliation Defects in Infrastructure as Code'
DOI: 10.4121/14518278.v3
title: Hyperspectral plastics dataset supplementary to the paper ‘Advancing floating plastic detection from space using hyperspectral imagery’

description: This database is the supplementary material of Tasseron et al., (2021): Advancing floating plastic detection from space using hyperspectral imagery.<br>More information about the contents of this dataset can be found in the enclosed readme - userguide file.
DOI: 10.6084/m9.figshare.10033253.v1
title: Detecting Prostatic Inflammation with Peripheral Lymphocyte Count and Free/total PSA Ratio in Men with LUTS/BPH

description: Trying to evaluate prostatic inflammation based on systemic inflammation level
DOI: 10.6084/m9.figshare.20054192.v1
title: 12019_bin9_ANME1

description: 12019_bin9_ANME1. ANME-1a
DOI: 10.6084/m9.figshare.23661798.v7
title: Data for the microgrid at Shoals Marine Laboratory, Appledore Island, Maine

description: Appledore Island, ME, USA, Microgrid Modeling and Optimization
DOI: 10.6084/m9.figshare.96814.v1
title: Dyslexia in Healthcare Professionals

description: A description of dyslexia in radiography students and the coping straties
DOI: 10.17632/3ncbhdd4nw
title: Mobility, Kinematic, and Dynamic Analysis of a 4R1H Mechanism. Julia Files

description: This dataset contains Julia files that perform mobility, kinematic, and dynamic analysis of a 1-DOF single-loop 4R1H mechanism, which is similar to the mechanism presented in paper https://doi.org/10.1007/978-3-031-45709-8_39. The corresponding paper describing the mechanism design and applied algorithms is going to be published in the Robotica journal. Please check the list of works at https://orcid.org/0000-0002-3928-5440.

The dataset includes the following files:
1. File "main.jl" is the main file that proceeds with the mobility, kinematic, and dynamic analysis of the mechanism step by step.
2. File "init.jl" is used to define geometrical and inertial parameters of the mechanism links.
3. File "mobility.jl" computes a twist system of the output link.
4. File "kinematics.jl" computes kinematic parameters (positions, velocities, accelerations, etc.) of the links.
5. File "dynamics.jl" computes the motor torque required to realize the desired motion.
6. File "plots.jl" includes functions that visualize the results of the kinematic and dynamic analysis.

The third version of the dataset has the following changes compared to the second version:
1. Files "torque_friction.xlsx" and "torque_no_friction.xlsx" have been replaced with "torque_friction_5.xlsx," "torque_friction_10.xlsx," "torque_friction_20.xlsx," "torque_no_friction_5.xlsx," "torque_no_friction_10.xlsx," and "torque_no_friction_20.xlsx," which contain the torque data obtained with CAD simulations in the Autodesk Inventor software for the crank angular speed equal to 5, 10, and 20 rpm.
2. There is a new section in "main.jl" file titled "Visualization for three various constant speeds of 5, 10, and 20 rpm" where the CAD data is compared with the analytical solution for various crank speeds.
3. The "plots.jl" file includes new functions "plot_kinematics_3" and "plot_torques_3," which plot the results of kinematic and dynamic analysis for three different speeds of the crank.
4. Optional files "Project.toml" and "Manifest.toml," which contain the information about the used packages, have been included in this dataset.
DOI: 10.6084/m9.figshare.14913162.v1
title: Rational Design of Pyrrole Derivatives with Aggregation-Induced Phosphorescence Characteristic for Time-Resolved and Two-Photon Luminescence Imaging

description: Rational Design of Pyrrole Derivatives with Aggregation-Induced Phosphorescence Characteristic for Time-Resolved and Two-Photon Luminescence Imaging
DOI: 10.6084/m9.figshare.5127262.v1
title: Supplementary Material for: Effects of Ultrapure Hemodialysis and Low Molecular Weight Heparin on the Endothelial Surface Layer

description: <b><i>Background:</i></b> Chronic kidney disease patients show changes in the endothelial surface layer (ESL). Whether hemodialysis (HD) itself or low molecular weight heparins (LMWH) induce ESL alterations is unknown. <b><i>Methods:</i></b> We studied the ESL in 20 HD patients with Sidestream Dark Field Imaging [measuring perfused boundary region (PBR)] and measurement of ESL constituents in plasma during HD in 2 studies. LMWH was administered at the start of HD in study A, and 120 min after the start of HD in study B. Mean platelet volume (MPV) and platelet large cell ratio (P-LCR) were also measured. <b><i>Results:</i></b> Syndecan-1 increased significantly 30 min after LMWH administration. sP-Selectin increased 120 min after HD start, and MPV and P-LCR decreased significantly during HD. No significant changes of PBR, sE-Selectin, sICAM-1, or sVCAM-1 were perceived. <b><i>Conclusions:</i></b> HD caused a significant increase in Syndecan-1 without a change in PBR. The administration of LMWH appeared to precede the rise in Syndecan-1.
DOI: 10.6084/m9.figshare.24947337.v2
title: Evaluation of point clusters within an inhomogeneous population using weighted random labeling

description: This paper proposes a new method for evaluating point clusters.
DOI: 10.6084/m9.figshare.11918373.v4
title: Improving Reverse Correlation - February 2020 version

description: Research using reverse correlation paradigms has become frequent over the last decade. In this paradigm, participants choose between a large number of image pairs, according to a prompt (e.g., “please choose the face that most resembles a trustworthy face”). The image pairs are generated by imposing random noise on the pixels that make up the image of a base face. The patterns of choices by participants are then used to compute an “average” matrix of noise pixels that, when imposed onto the base face, reflect an underlying shared mental construct of the “face” of the attribute. However, examinations of the reliability and validity of this approach remain rare. In the present paper, we examine the effects of filtering out data from individual participants or trials to increase the signal-to-noise ratio of composite images. We focus on order effects of trials, compliance and reliability effects, as well as the diagnostic quality of image pairs. We present different diagnostic methods to examine these three aspects using data from six reverse correlation studies conducted both in-lab and online with diverse samples (i.e., from Burkina Faso, Germany, and the U.S.) using two different base faces (i.e., Black and White). For each of the six studies, we compare the composite images of the complete sample to composite images that exclude non-complier respondents or non-diagnostic image pairs. Our R scripts are publicly available for easy implementation of our suggestions in related research.
DOI: 10.17632/4pbz8dg9fx
title: Fire weather index - June maxima (1970 - 2014)

description: Fire weather index (FWI) is an indicator of fire potential used in the Canadian Forest Fire Weather Index System (Van Wagner, 1987). It is calculated daily from weather measurements at the stations. Presented data include values of the June maxima of the FWI obtained at 13 stations (columns) in British Columbia from 1970 until 2014 (rows). The data were kindly provided by Steve Taylor, Pacific Forestry Centre, Canadian Forest Service. The data origin is BC Wildfire Service, Ministry of Lands, Forests, and Natural Resource Operations.
DOI: 10.6084/m9.figshare.28844123.v1
title: Data for 'Dynamical patterns and nonreciprocal effective interactions in an active-passive mixture through exact hydrodynamic analysis'

description: Data from stochastic particle simulations and PDE simulations used to produce the figures in the paper "Dynamical patterns and nonreciprocal effective interactions in an active-passive mixture through exact hydrodynamic analysis".
DOI: 10.6084/m9.figshare.19328858.v1
title: Utility of indocyanine green videoangiography with FLOW 800 analysis in brain tumour resection as a venous protection technique

description: patient information
DOI: 10.6084/m9.figshare.19499294.v1
title: patches and local annotations, slide 136, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.5572714.v1
title: LP661-13 TRES Spectra

description: These are 14 epochs of TRES high resolution spectra of the M4 eclipsing binary LP661-13. These data were originally published in Dittmann et al. 2017, and were later used in Czekala et al. 2017 as a proof of concept for the PSOAP disentangling algorithm. <br>Feel free to use these data for instructional/tutorial purposes on how to use PSOAP. If you plan to write a paper based upon these spectra (i.e., results derived from this specific dataset will appear in your paper) please contact Jason and Ian for usage details at jason.dittmann@gmail.com and iancze@gmail.com.<br>Tools to read the HDF5 format are available in most programming languages---google will likely yield a package for your favorite language.<br>Documentation on the PSOAP project can be found in the references.
DOI: 10.17632/5zrz4fmw5y
title: Dataset of the next-generation sequencing of variable 16S rRNA from bacteria and ITS2 regions from fungi and plants derived from honeybees kept under anthropogenic landscapes

description: We used next generation sequencing (NGS) to analyse the 16S rRNA bacterial gene amplicons based on the V3-V4 region and the ITS2 regions from fungi and plants derived from honeybee samples. Amplicon libraries, were prepared using the 16S Metagenomic Sequencing Library Preparation, Preparing 16S Ribosomal RNA Gene Amplicons for the Illumina MiSeq System (Illumina®) protocol. NGS raw data are available at https://www.ncbi.nlm.nih.gov/bioproject/PRJNA686953. The presented data can be used to compare the metagenomics samples from different honeybee population all over the world. Higher load of fungi, and bacteria groups as: Firmicutes (Lactobacillus); γ-proteobacteria, Neisseriaceae, and unassigned other bacteria was observed for Nosema cearana and neogregarines infected honeybees. Healthy honeybees had higher load of plant pollens, and bacteria groups as: γ-proteobacteria, Orbales, Gilliamella, Snodgrassella, γ-proteobacteria, Enterobacteriaceae. More details you can find in research article [1] Ptaszyńska et al. 2021. Datasets: Excel 1. In the excel file are the row original information form NGS of composition of bacteria from 16S_taxonomyReads from seasonal changes of Polish honeybee samples (collected from April to September). Excel 2. In the excel file are the row original information form NGS of composition of fungi and plant pollen from ITS_taxonomyReads from seasonal changes of Polish honeybee samples (collected from April to September). Excel 3. In the excel file are the row original information form NGS of composition of bacteria from 16S_taxonomyReads from UK, Greece, Spain and Thailand honeybee samples. Excel 4. In the excel file are the row original information form NGS of composition of bacteria from ITS_taxonomyReads from UK, Greece, Spain and Thailand honeybee samples. Dataset 5. Table 1A. One-way ANOVA report from the correlation between Polish honeybees’ health status and the bacteria detected on the base of 16S rDNA NGS analyses. Dataset 6. Table 1B. One-way ANOVA report from the correlation between Polish honeybees’ health status and fungi and plant pollens detected on the basis of ITS NGS analysis. Dataset 7. Table 2A. One-way ANOVA report from the correlation between UK, Spain, Greece and Thailand honeybees’ health status and the bacteria detected on the base of 16S rDNA NGS analyses. Dataset 8. Table 2B. One-way ANOVA report from the correlation between UK, Spain, Greece and Thailand honeybees’ health status and the detected fungi and plant pollens detected on the basis of ITS NGS analysis.
DOI: 10.6084/m9.figshare.28774586.v1
title: Data for "<b>Harnessing Deep Learning to Improve Near-Inertial Internal Wave Forecasts</b>" by Liu et al. (2025)

description: This dataset contains the materials necessary to reproduce the key results presented in the research "<b>Harnessing Deep Learning to Improve Near-Inertial Internal Wave Forecasts</b>" by Kun Liu et al. (2025). It includes: (1) the deep learning code used for near-inertial internal wave (NIW) prediction, (2) the observational NIW data from moored instruments used for model training and evaluation, and (3) the predicted NIW fields from both the deep learning model and the slab model. These resources are provided to ensure transparency and reproducibility of the study.