cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10466885
title: Spatial distribution of fishing effort in the Maritime-Terrestrial National Park of the Atlantic Islands of Galicia (PNMTIAG) in Galicia (Spain)

description: This file contains data of spatial distribution of fishing effort in terms of sets of gear/day or vessels/day in the PNMTIAG. Fishing effort has been calculated between 2016 and 2017 by mean of a stratified random sampling in three of the four archipelagos included in the park (Sálvora, Ons and Cíes). In the case of the Cortegada archipelago, given the smaller size of its marine area, a census was carried out over its entire surface for both passive fishing sets of gears and non-passive fishing vessels. More methodological details are exposed in Parada and Nieto (2024) (DOI: https://doi.org/10.1016/j.rsma.2024.103435).

The data set includes all the gears of artisanal fisheries employed in the park, excluding selfish fisheries (Except in Cortegada because of the great importance of Manual clam rake): Large-mesh trammel nets, Hoop nets, Spider crab pot, Velvet crab pots, Octopus pots, Cuttlefish pot, Handline, Bottom longlines, Set longlines, Manual clam rake, Trawl clam rake, Small-mesh trammel nets Large-bottom gillnet, Small-bottom gillnet, Set gillnets, Small purse seine-trawl, Sport fishing (not allowed into de park) and Crab hook.

The file is structured in eight columns: Grid, the name of the 500 x 500 m grid in which the maritime area of the park have been divided for sampling propose (see Parada (2024); doi.org/ 10.5281/zenodo.10466820); Archip, the archipelago; Gear, the name of the gear; Arte, Spanish name of the gear; f(sets_gear/d), fishing effort in terms of sets of gear/day for passive-gears or mean vessels/day por non-passive gears in each grid; X, longitude of the centroid of the grid; Y, latitude of the centroid of the grid; CRS, Coordinate Reference System for X and Y.
DOI: 10.5281/zenodo.10466886
title: Spatial distribution of fishing effort in the Maritime-Terrestrial National Park of the Atlantic Islands of Galicia (PNMTIAG) in Galicia (Spain)

description: This file contains data of spatial distribution of fishing effort in terms of sets of gear/day or vessels/day in the PNMTIAG. Fishing effort has been calculated between 2016 and 2017 by mean of a stratified random sampling in three of the four archipelagos included in the park (Sálvora, Ons and Cíes). In the case of the Cortegada archipelago, given the smaller size of its marine area, a census was carried out over its entire surface for both passive fishing sets of gears and non-passive fishing vessels. More methodological details are exposed in Parada and Nieto (2024) (DOI: https://doi.org/10.1016/j.rsma.2024.103435).

The data set includes all the gears of artisanal fisheries employed in the park, excluding selfish fisheries (Except in Cortegada because of the great importance of Manual clam rake): Large-mesh trammel nets, Hoop nets, Spider crab pot, Velvet crab pots, Octopus pots, Cuttlefish pot, Handline, Bottom longlines, Set longlines, Manual clam rake, Trawl clam rake, Small-mesh trammel nets Large-bottom gillnet, Small-bottom gillnet, Set gillnets, Small purse seine-trawl, Sport fishing (not allowed into de park) and Crab hook.

The file is structured in eight columns: Grid, the name of the 500 x 500 m grid in which the maritime area of the park have been divided for sampling propose (see Parada (2024); doi.org/ 10.5281/zenodo.10466820); Archip, the archipelago; Gear, the name of the gear; Arte, Spanish name of the gear; f(sets_gear/d), fishing effort in terms of sets of gear/day for passive-gears or mean vessels/day por non-passive gears in each grid; X, longitude of the centroid of the grid; Y, latitude of the centroid of the grid; CRS, Coordinate Reference System for X and Y.
DOI: 10.5281/zenodo.10467273
title: Spatial distribution of sighting frequency of fishing gears in the Maritime-Terrestrial National Park of the Atlantic Islands of Galicia (PNMTIAG) in Galicia (Spain)

description: This file contains data of spatial distribution of sighting frequency (%) of fishing gears (passive-fears) or vessels (non-pasive-gears) in the PNMTIAG. Data have been calculated between 2016 and 2017 by mean of a stratified random sampling in three of the four archipelagos included in the park (Sálvora, Ons and Cíes). In the case of the Cortegada archipelago, given the smaller size of its marine area, a census was carried out over its entire surface for both passive fishing sets of gears and non-passive fishing vessels. More methodological details are exposed in Parada and Nieto (2024) (DOI: https://doi.org/10.1016/j.rsma.2024.103435).

The data set includes all the gears of artisanal fisheries employed in the park, excluding selfish fisheries (Except in Cortegada because of the great importance of Manual clam rake): Large-mesh trammel nets, Hoop nets, Spider crab pot, Velvet crab pots, Octopus pots, Cuttlefish pot, Handline, Bottom longlines, Set longlines, Manual clam rake, Trawl clam rake, Small-mesh trammel nets Large-bottom gillnet, Small-bottom gillnet, Set gillnets, Small purse seine-trawl, Sport fishing (not allowed into de park) and Crab hook.

The file is structured in eight columns: Grid, the name of the 500 x 500 m grid in which the maritime area of the park have been divided for sampling propose (see Parada (2024); doi.org/ 10.5281/zenodo.10466820); Archip, the archipelago; Gear, the name of the gear; Arte, Spanish name of the gear; Frec_Use(%), sighting frequency in each grid; X, longitude of the centroid of the grid; Y, latitude of the centroid of the grid; CRS, Coordinate Reference System for X and Y.
DOI: 10.5281/zenodo.10467272
title: Spatial distribution of sighting frequency of fishing gears in the Maritime-Terrestrial National Park of the Atlantic Islands of Galicia (PNMTIAG) in Galicia (Spain)

description: This file contains data of spatial distribution of sighting frequency (%) of fishing gears (passive-fears) or vessels (non-pasive-gears) in the PNMTIAG. Data have been calculated between 2016 and 2017 by mean of a stratified random sampling in three of the four archipelagos included in the park (Sálvora, Ons and Cíes). In the case of the Cortegada archipelago, given the smaller size of its marine area, a census was carried out over its entire surface for both passive fishing sets of gears and non-passive fishing vessels. More methodological details are exposed in Parada and Nieto (2024) (DOI: https://doi.org/10.1016/j.rsma.2024.103435).

The data set includes all the gears of artisanal fisheries employed in the park, excluding selfish fisheries (Except in Cortegada because of the great importance of Manual clam rake): Large-mesh trammel nets, Hoop nets, Spider crab pot, Velvet crab pots, Octopus pots, Cuttlefish pot, Handline, Bottom longlines, Set longlines, Manual clam rake, Trawl clam rake, Small-mesh trammel nets Large-bottom gillnet, Small-bottom gillnet, Set gillnets, Small purse seine-trawl, Sport fishing (not allowed into de park) and Crab hook.

The file is structured in eight columns: Grid, the name of the 500 x 500 m grid in which the maritime area of the park have been divided for sampling propose (see Parada (2024); doi.org/ 10.5281/zenodo.10466820); Archip, the archipelago; Gear, the name of the gear; Arte, Spanish name of the gear; Frec_Use(%), sighting frequency in each grid; X, longitude of the centroid of the grid; Y, latitude of the centroid of the grid; CRS, Coordinate Reference System for X and Y.
DOI: 10.15468/j9k3f2
title: Avifaunal diversity study of Pakhibitan, Ecopark, till March 2023

description: The Avifaunal diversity study of Pakhibitan Ecopark is published by Nature Mates Nature Club under WBHIDCO Pakhibitan Project in Pakhibitan, Ecopark, Newtown, Kolkata, West Bengal, India.
This sampling event was performed in a selected point located in the marshlands covered with elephant grass (Typha sp.) of Pakhibitan surrounded by a forest patch.
This dataset includes all the birds recorded in a span of three months. All the species are identified up to the species or genus level. A total of 110 species of birds are recorded belonging to 46 families and 82 genera so far
The three most observed species are Red-vented Bulbul (Pycnonotus cafer), House crow (Corvus splendens), Plain Prinia(Prinia inornata) .
This dataset also includes the life stage, activity and behavior of the birds observed.
DOI: 10.15468/e4x27j
title: Sample Study on Avifaunal Diversity of North Sikkim during October 2018.

description: The Sample Study on Avifaunal Diversity of North Sikkim was conducted by Lina Chatterjee in the month of October 2018 and the identification and data analysis was done by Nature Mates-Nature Club team.
This dataset covers the areas Lachen, Yamthung valley, Lachung, Gurudongmar. The study area covers varied habitats like Alpine pasture, hilly area, waterfalls, meandering rivers, rhododendron forest, River, hot spring, grazing pasture, rolling meadows with pine and silver fir lining sides, Cold alpine lake, snow capped mountain. 
All the birds are identified up to the species level. A total of 108 species of birds we recorded belonging to 36 families, 9 orders
This dataset also includes the life stage, activity and behaviour of the birds observed.
There are few species of birds which are widespread in Gurudongmar but are uncommon elsewhere, of which Rufous-necked snowfinch (Pyrgilauda ruficollis), Horned lark (Eremophila alpestris) were recorded during our study.
DOI: 10.3886/e189101v1-146581
title: Code for: Exacerbated Inequalities: the Learning Loss from COVID-19 in Italy

description: Using administrative data on the
universe of 8th graders, we study learning losses in Italy between 2021 and
2019 to estimate the effect of schools' closures due to the COVID-19 pandemic.
We find an average learning loss of 0.14 SD in math and 0.05 SD in reading. The
pandemic widened pre-existing gaps by socio-economic status (SES): students in
the bottom quintile of SES learnt 0.21 SD less in math and 0.10 SD less in
reading. Learning losses for immigrant students in math are larger than for
native ones. We do not find economically significant differences by gender.
DOI: 10.5281/zenodo.10466819
title: Grid in PNMTIAG marine area

description: To estimate the spatial distribution of different variables the maritime area of the four archipelagos of the Maritime-Terrestrial National Park of the Atlantic Islands of Galicia (PNMTIAG) in Galicia (Spain): Cortegada, Sálvora, Ons and Cíes, was divided into 500 x 500 m grids. Some of the grids are not this size because they have been cut by de cost line or the park’s maritime limits. For stratified samplings two strata have been defined in Sálvora, Ons and Cíes with a geographical criterion: East (E in EW field) and West (W in EW field). The definition of the strata was based on the north-south geographical orientation of these archipelagos. This geographical orientation defines one side exposed to the ocean and the other sheltered which presupposes different habitats and ecological characteristics.

The attribute table of this vector shapefile has four fields: i) ID; ii) EW, with value W for the west stratum grids and E for the east stratum grids; iii) Grid, containing the name of the grids; iv) Archipelag, indicating the archipelago corresponding to each grid.

The grids were used in several studies. Created to quantify the fishing effort of the artisanal fleet between 2016 and 2017. It was used to study the stock and spatial distribution of Ammodytidae in 2018 and 2019. Also used to study interactions between both professional fishing and recreative boats and seabirds.
DOI: 10.5281/zenodo.10466820
title: Grid in PNMTIAG marine area

description: To estimate the spatial distribution of different variables the maritime area of the four archipelagos of the Maritime-Terrestrial National Park of the Atlantic Islands of Galicia (PNMTIAG) in Galicia (Spain): Cortegada, Sálvora, Ons and Cíes, was divided into 500 x 500 m grids. Some of the grids are not this size because they have been cut by de cost line or the park’s maritime limits. For stratified samplings two strata have been defined in Sálvora, Ons and Cíes with a geographical criterion: East (E in EW field) and West (W in EW field). The definition of the strata was based on the north-south geographical orientation of these archipelagos. This geographical orientation defines one side exposed to the ocean and the other sheltered which presupposes different habitats and ecological characteristics.

The attribute table of this vector shapefile has four fields: i) ID; ii) EW, with value W for the west stratum grids and E for the east stratum grids; iii) Grid, containing the name of the grids; iv) Archipelag, indicating the archipelago corresponding to each grid.

The grids were used in several studies. Created to quantify the fishing effort of the artisanal fleet between 2016 and 2017. It was used to study the stock and spatial distribution of Ammodytidae in 2018 and 2019. Also used to study interactions between both professional fishing and recreative boats and seabirds.
DOI: 10.6084/m9.figshare.8840558
title: Additional file 1: of Transcriptomic analysis of differentially expressed genes in the oviduct of Rhacophorus omeimontis provides insights into foam nest construction

description: Table S1-S9. Table S1: The statistics and quality of reads for the six samples of the Rhacophorus omeimontis transcriptome. Table S2: The upregulated differentially expressed genes in the oviduct of Rhacophorus omeimontis. Table S3: The downregulated differentially expressed genes in the oviduct of Rhacophorus omeimontis. Table S4: The primers used for quantitative RT-PCR analysis in this study. Table S5: GO enrichment of the upregualted DEGs. Table S6: GO enrichment of the downregualted DEGs. Table S7: KEGG enrichment of the upregualted DEGs. Table S8: KEGG enrichment of the downregualted DEGs. Table S9: The annotation information of all unigenes. (XLSX, 14,044â kb) (XLSX 14036 kb)
DOI: 10.6084/m9.figshare.8840558.v1
title: Additional file 1: of Transcriptomic analysis of differentially expressed genes in the oviduct of Rhacophorus omeimontis provides insights into foam nest construction

description: Table S1-S9. Table S1: The statistics and quality of reads for the six samples of the Rhacophorus omeimontis transcriptome. Table S2: The upregulated differentially expressed genes in the oviduct of Rhacophorus omeimontis. Table S3: The downregulated differentially expressed genes in the oviduct of Rhacophorus omeimontis. Table S4: The primers used for quantitative RT-PCR analysis in this study. Table S5: GO enrichment of the upregualted DEGs. Table S6: GO enrichment of the downregualted DEGs. Table S7: KEGG enrichment of the upregualted DEGs. Table S8: KEGG enrichment of the downregualted DEGs. Table S9: The annotation information of all unigenes. (XLSX, 14,044â kb) (XLSX 14036 kb)
DOI: 10.6084/m9.figshare.25304824
title: <b>Modified Arterial Based Complexity Scoring System: A Novel Parameter for </b><b>A</b><b>ssessing the </b><b>Q</b><b>uality and </b><b>S</b><b>afety of Renal Tumor Enucleation</b>

description: Raw data
DOI: 10.6084/m9.figshare.25304824.v1
title: <b>Modified Arterial Based Complexity Scoring System: A Novel Parameter for </b><b>A</b><b>ssessing the </b><b>Q</b><b>uality and </b><b>S</b><b>afety of Renal Tumor Enucleation</b>

description: Raw data
DOI: 10.6084/m9.figshare.7175861
title: Additional file 2: of Identification and fine mapping of Bph33, a new brown planthopper resistance gene in rice (Oryza sativa L.)

description: Table S3. Structural variations in candidate genes of Bph33. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7175861.v1
title: Additional file 2: of Identification and fine mapping of Bph33, a new brown planthopper resistance gene in rice (Oryza sativa L.)

description: Table S3. Structural variations in candidate genes of Bph33. (XLSX 9 kb)
DOI: 10.15131/shef.data.21710516
title: Identifying Malnutrition in Emergency General Surgery (EGS): A Systematic Review

description:  Raw data of all included studies
<br>
<strong>Methods</strong>
MEDLINE, Embase, Cumulative Index to Nursing and Allied Health Literature, trial registries, and relevant journals published between January 2000 and January 2022 were searched for studies of adult patients with any emergency general surgery diagnosis, managed conservatively or operatively, with an assessment of nutritional status. Mixed populations were included if more than 50 per cent of patients were emergency general surgery patients or emergency general surgery results could be separately extracted. Studies in which patients had received nutritional support were excluded. The protocol was registered with PROSPERO, the international prospective register of systematic reviews (CRD42021285897).
<strong>Results</strong>
From 6700 studies screened, 324 full texts were retrieved and 31 were included in the analysis. A definition of malnutrition was provided in 23 studies (75 per cent), with nutritional status being determined by a variety of methods. A total of seven nutrition screening tools and a total of nine ‘assessment’ tools were reported. To define malnutrition, the most commonly used primary or secondary marker of nutritional status was BMI, followed by albumin level.
DOI: 10.15131/shef.data.21710516.v1
title: Identifying Malnutrition in Emergency General Surgery (EGS): A Systematic Review

description:  Raw data of all included studies
<br>
<strong>Methods</strong>
MEDLINE, Embase, Cumulative Index to Nursing and Allied Health Literature, trial registries, and relevant journals published between January 2000 and January 2022 were searched for studies of adult patients with any emergency general surgery diagnosis, managed conservatively or operatively, with an assessment of nutritional status. Mixed populations were included if more than 50 per cent of patients were emergency general surgery patients or emergency general surgery results could be separately extracted. Studies in which patients had received nutritional support were excluded. The protocol was registered with PROSPERO, the international prospective register of systematic reviews (CRD42021285897).
<strong>Results</strong>
From 6700 studies screened, 324 full texts were retrieved and 31 were included in the analysis. A definition of malnutrition was provided in 23 studies (75 per cent), with nutritional status being determined by a variety of methods. A total of seven nutrition screening tools and a total of nine ‘assessment’ tools were reported. To define malnutrition, the most commonly used primary or secondary marker of nutritional status was BMI, followed by albumin level.
DOI: 10.5281/zenodo.10718427
title: Point clouds, cubodis, structural models

description: Point clouds as .laz format, cuboids are mesh objects as .ply format, and structural models (including cross-sections, beams, and rigid-to-rigid connectors) in ASCII .stp format.
DOI: 10.5281/zenodo.10718428
title: Point clouds, cubodis, structural models

description: Point clouds as .laz format, cuboids are mesh objects as .ply format, and structural models (including cross-sections, beams, and rigid-to-rigid connectors) in ascii .stp format.
DOI: 10.5281/zenodo.10722237
title: Point clouds, cubodis, structural models

description: Point clouds as .laz format, cuboids are mesh objects as .ply format, and structural models (including cross-sections, beams, and rigid-to-rigid connectors) in ASCII .stp format.
DOI: 10.17031/65d36258d3700
title: 1961 Marine Biological Association of the UK (MBA) Bay of Biscay RV Sarsia Cruise October

description: Samples from the 1961 RV Sarsia cruise collecting collected fauna samples from the European continental slope/Bay of Biscay
DOI: 10.6084/m9.figshare.7792022
title: Autophagy-mediated <i>Mir6981</i> degradation exhibits <i>CDKN1B</i> promotion of PHLPP1 protein translation

description: PHLPP1 (PH domain and leucine rich repeat protein phosphatase 1) is a newly identified family of Ser/Thr phosphatases that catalyzes the dephosphorylation of a conserved regulatory motif of the AGC kinases resulting in a tumor suppressive function, while CDKN1B/p27 also acts as a tumor suppressor by regulating cell cycle, senescence, apoptosis, and cell motility. Our most recent studies reveal that CDKN1B is required for PHLPP1 abundance, which contributes to the inhibition of carcinogenic arsenite-induced cell malignant transformation through inhibition of RPS6-mediated <i>Hif1a</i> translation. However, nothing is known about the mechanisms underlying the crosstalk between these 2 key tumor suppressors in intact cells. Here, for the first time to the best of our knowledge, we show that CDKN1B is able to promote PHLPP1 protein translation by attenuating the abundance of <i>Mir6981</i>, which binds directly to the 5ʹuntranslated region (UTR) of <i>Phlpp1</i> mRNA. Further studies indicate that the attenuation of <i>Mir6981</i> expression is due to macroautophagy/autophagy-mediated degradation of <i>Mir6981</i> in an SQSTM1/p62-dependent fashion. Moreover, we have determined that <i>Sqstm1</i> is upregulated by CDKN1B at the level of transcription <i>via</i> enhancing SP1 protein stability in an HSP90-depdendent manner. Collectively, our studies prove that: 1) SQSTM1 is a CDKN1B downstream effector responsible for CDKN1B-mediated autophagy; 2) by promoting the autophagy-mediated degradation of <i>Mir6981</i>, CDKN1B exerts a positive regulatory effect on PHLPP1 translation; 3) <i>Mir6981</i> suppresses PHLPP1 translation by binding directly to its mRNA 5ʹ-UTR, rather than classical binding to the 3ʹ-UTR. These findings provide significant insight into understanding the crosstalk between CDKN1B and PHLPP1. <b>Abbreviations:</b> ATG: autophagy related; ACTB: actin beta; BAF: bafilomycin; BECN1: beclin 1; <i>Cdkn1b</i>/<i>p27</i>: cyclin-dependent kinase inhibitor 1B; CHX: cycloheximide; DMEM: dulbecco’s modified eagle medium; FBS: fetal bovine serum; GAPDH: glyceraldehyde −3-phosphate dehydrogenase; <i>Hif1a</i>: hypoxia inducible factor 1, alpha subunit; <i>Hsp90</i>: heat shock protein 90; JUN: Jun proto-oncogene, AP1 transcription factor subunit; MAP1LC3/LC3: microtubule-associated protein 1 light chain 3; MG132: proteasome inhibitor; <i>Mtor</i>: mechanistic target of rapamycin kinase; <i>Phlpp1</i>: PH domain and leucine rich repeat protein phosphatase 1; <i>Phlpp2</i>: PH domain and leucine rich repeat protein phosphatase 2; <i>Pp2c</i>: protein phosphatase 2 C; RPS6: ribosomal protein S6; <i>Sp1</i>: trans-acting transcription factor 1; <i>Sqstm1/p62</i>: sequestosome 1; TUBA: alpha tubulin; 3ʹ-UTR; 3ʹ-untranslated region; 5ʹ-UTR: 5ʹ-untranslated region.