cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25903/5e548a34e1b70
title: Efficacy of chemical treatments for Acropora-eating flatworm infestations

description: <p>Pest management is a critical component of aquaculture operations since high stocking densities can facilitate rapid pest infestation and high stock losses. The <em>Acropora</em> eating-flatworm, <em>Prosthiostomum acroporae</em> impact the health of captive <em>Acropora</em> colonies, which are commonly grown as part of coral aquaculture for trade, research and the hobbyist sector. We investigated the efficacy of anthelmintics levamisole and praziquantel for the removal of <em>Acropora</em>-eating flatworms from <em>A. millepora</em> using one-hour chemical immersions and assessed if these treatments negatively impacted coral growth and/or caused bleaching. Coral fragments (194 total) were spread across eight treatments; levamisole infested (LI; n = 20), levamisole uninfested (LU; n = 20), praziquantel (in EtOH) infested (PI; n = 20), praziquantel (in EtOH ) uninfested (PU; n = 20), handling control infested (HCI; n = 14), handling control uninfested (HCU; n = 20), EtOH control (EC; n = 40), control with no handling (NHC; n = 40). To test the efficacy of flatworm removal by short, one-hour chemical immersions, <em>A. millepora</em> fragments (54 total) were manually infested (three P. acroporae per fragment) and immersed separately to uninfested <em>A. millepora</em> fragments (60 total). All fragments were shaken in in a bath of seawater following immersion, then mechanically screened to recover any flatworms not removed from either immersion or shaking to determine the removal efficacy of the treatments. Furthermore, coral fragments (194 total) were photographed before treatment and four weeks following treatments to compare coral basal growth and visual signs of bleaching between infested and uninfested fragments. Levamisole and praziquantel immersions removed significantly more flatworms from <em>A. millepora</em> fragments (93% ± 3.8 and 95.0% ± 2.6 respectively; mean ± SE; p < 0.05) compared to the handling control (26% ± 7.5%). Chemical treatments had no significant effect on basal growth, with fragments across all treatments (including controls) increasing basal area by 73.31 ± 3.82% (mean ± SE). Furthermore, bleaching was not observed for any <em>A. millepora</em> fragments across the treatments and controls. Results from this study demonstrate that levamisole and praziquantel used in conjunction with water movement were effective at removing >90% of <em>Acropora</em> eating-flatworms with no observable negative impacts on coral health on treated coral fragments relative to controls.</p>
DOI: 10.25903/5137-8x29
title: Data from: Changes in adaptive capacity after severe climate disturbances

description: <p><strong>Background [Extract from Related publication]: </strong>Around the world, people&rsquo;s capacity to adapt to increasingly severe impacts from climate change is being tested. Over the last decade, scientists have made great progress in understanding adaptive capacity, its determinants, and its association with vulnerability. However, most of the research on adaptive capacity to date has been static, not considering how adaptive capacity might change over time, particularly in the aftermath of a severe disturbance. We studied the adaptive capacity dynamics of Asian-Pacific reef tourism operators affected by coral bleaching and tropical cyclones compared to a control group with non-affected operators. </p>
<p><strong>Brief methods [Extract]: </strong>We conducted 213 surveys with representatives (e.g., owners or managers) of reef tourism companies (operators) across the Asia-Pacific to obtain information about their adaptive capacity before and after a severe climate disturbance. A third (32%) of the total sample consisted of operators in Indonesia,followed by 27% from Australia, 11% from Japan, 8% each from Fiji and the Mariana Islands, and 7% each from the Hawaiian Islands and French Polynesia. Our sample includes a less-affected control group to explore whether increasingly severe climate change impacts led to significant changes in people&rsquo;s adaptive capacity.</p>
<p><strong>The sampling strategy and sample details have been described in the Experimental Procedures and in detail in Document S1, and are available from the open access Related publication linked below. </strong></p>
<p>This dataset consists of:</p>
<ul>
<li>Raw dataset and results of chi-square analyses to test for association between different sets of samples</li>
<li>7 anonymized lists with reef tourism operators (population) by location (zip file)</li>
<li>Raw data (2 files i.e. tropical cyclone and coral bleaching subsamples) used to produce Figure 2: Cross-correlations between changes in adaptive capacity (Related publication)</li>
</ul>
<p>Data files are saved in both MS Excel (.xlsx) and OpenDocument (.ods) formats.</p>
<p>These files are open access and can be downloaded from the links provided.</p>
<p>Software/equipment used to create/collect the data: <a href="https://www.kobotoolbox.org/">https://www.kobotoolbox.org/</a></p>
<p>Software/equipment used to manipulate/analyse the data: Excel and R programming language</p>
DOI: 10.25903/5e2f898107499
title: Green Island seagrass megaherbivore exclusion data 2017

description: <p>Data from an exclusion cage study conducted on Green Island (Queensland) from August - November 2017. Data contains information from cores collected at the end of the experiment (15cm in diameter), shoot heights throughout the duration of the experiment and seagrass tissue nutrients from samples collected inside megaherbivore cages at site one and site three.</p><p> Sites at Green Island were located at:</p><p class="p1"><span class="s1">Site 1: 16°45.407’S 145°58.215’E</span></p><p class="p1"><span class="s1">Site 2: 16°45.390’S 145°58.286’E</span></p><p class="p1"><span class="s1">Site 3: 16°45.354’S 145°58.337’E</span></p><p class="p1"><span class="s1">The full methodology is available in the publication shown in the Related Publications link below.</span></p>
DOI: 10.25903/d9r4-t979
title: Reanalysis shows the extreme decline effect does not exist in fish ocean acidification studies - bioRxiv
DOI: 10.25903/mk04-0w17
title: Reef Rescue Marine Monitoring Program - Assessment of Terrestrial Run-off entering the Reef 

description: <p>The Reef 2050 WQIP Marine Monitoring Program (MMP) is a key component in the assessment of long term improvements in inshore water quality and marine ecosystem health that are expected to occur with improved land management practices. Data from the MMP is combined with monitoring and modelling data produced at paddock and catchment scales to produce a summary of the health of the GBR and its catchments. This component of the program assesses the spatial and temporal trends in terrestrial runoff entering the GBR and the link to end of catchment loads. The water quality data represents water samples collected both during ambient and flood plume conditions. The samples are analysed for suspended sediments, dissolved and particulate forms of nitrogen and phosphorus, coloured dissolved organic matter, chlorophyll a, dissolved organic carbon and silica. Monitoring occurs at selected sites off the Burdekin, Tully and Russell Mulgrave regions and off the Mackay Whitsunday region during flood conditions. Additional profiles of the water column are taken for salinity, temperature, depth, dissolved oxygen and light (PAR) as well as secchi depth.</p>
<p>Data are managed at TropWATER, James Cook University on a Microsoft Access database. TropWATER sampling included other rivers in flood plume conditions (such as the Fitzroy and Burnett) in the past and these are also in the database. </p>
<p>The TropWATER component of the water quality part of the Marine Monitoring Program (this dataset) joins with Howley Environmental Consulting how are subcontracted by JCU to undertake water quality sampling in key rivers in Cape York. These data are then shared with AIMS who conduct ambient (only) sampling at the same sites off the Russell Mulgrave, Tully, Burdekin and Mackay Whitsunday Rivers (and more recently off the Fitzroy). All of these data are then compiled by AIMS and jointly reported in annual reports for the Marine Monitoring Program. See the Related resources section for links.</p>
DOI: 10.4225/28/56bd1c26a28d6
title: Fish rejections from the Papua New Guinea marine aquarium fishery from January to June 2010
DOI: 10.4225/28/558b7a6553c7d
title: Experimental study of trace element release during ultrahigh-pressure serpentinite dehydration
DOI: 10.25903/4qjj-t894
title: JCU Barramundi Genomics Research

description: A data repository for barramundi related projects from the aquaculture genetics group at JCU.
DOI: 10.4225/28/5ab08a55baf15
title: A comparison of closed system and flow-through respirometry techniques using adult Acanthochromis polyacanthus
DOI: 10.25903/5e689220aa49a
title: Rapid gill development in coral reef fishes supports the 'ionoregulatory first' hypothesis

description: <p>This dataset contains measurements of oxygen uptake rates, histological morphometrics, and immunoreactive cell metrics in <em>Acanthochromis polyacanthus</em> and <em>Amphiprion melanopus</em> throughout their embryonic development. Data includes: histological morphometrics (i.e., structure becomes apparent), oxygen uptake rates (eaverage oxygen uptake rates), immunoreactive density data (yolksac and trunk), immunoreactive cell size data (yolksac and trunk), and immunoreactive gill density (density estimates). </p>
DOI: 10.25903/78fb-f688
title: Proteomic data of Edible and King crab extracts used for skin prick testing

description: Protein extracts of King and edible crabs (raw meat, cooked meat, raw intestine and raw shell) were used for skin prick testing of crab processing workers. In solution tryptic digest were performed and proteins identified in each extract. This data record is a detailed list of all proteins that were identified.

Software/equipment used to create/collect the data: Bio21 Proteomic facility

Software/equipment used to manipulate/analyse the data: Bio21 Proteomic facility
DOI: 10.25903/9fpt-e946
title: Copula sivickisi population structure at Magnetic Island

description: <p>Data on the distribution of the cubozoan jellyfish Copula sivickisi were collected from different reefs/bays at Magnetic Island during the 2017 medusae season. Data were collected by determining the Nmax from underwater video, with a light attractant. Further, biophysical modelling was carried out to explore the role of C. sivickisi medusae behaviour in restricting their distribution to shallow reefs (2016 medusae season), to ascertain the internal structure of the Magnetic Island population (2017 medusae season) and to determine if the island population represented a stock that was isolated from any mainland populations (2017 medusae season).</p>
<p>Full methods are provided in: <br />Schlaefer, J.A., Wolanski, E., Lambrechts, J., Kingsford, M.J., 2021. Behavioural and oceanographic isolation of an island-based jellyfish (Copula sivickisi, Class Cubozoa) population. Scientific Reports 11, 10280. <a href="https://doi.org/10.1038/s41598-021-89755-7">https://doi.org/10.1038/s41598-021-89755-7</a> </p>
<p><br />Software/equipment used to create/collect the data: Microsoft excel, Second-generation Louvain-la-Neuve Ice-ocean Model</p>
<p>Software/equipment used to manipulate/analyse the data: python3 </p>
DOI: 10.25903/xy4s-c372
title: Family Production (Prawn Industrial Transformation Research Hub)

description: Location for the backend data storage associated with a database VM as established in relation to the prawn ITRH work.
DOI: 10.25903/b0qy-a048
title: RCP4.5 future climate layers for Australia - 5km resolution

description: <p>Representative Concentration Pathways (RCPs) has been adopted by the IPCC to replace the Special Report on Emissions Scenarios (SRES) used in the AR4 report. The RCP4.5 emission pathway It is a stabilization scenario : stabilization without overshoot pathway to 4.5 W/m2 at stabilization after 2100. RCP4.5 bioclimatic variable spatial layers were developed for Australia (5km grid). Download 4GB zip file containing layers for 18 Global Circulation Models (GCMs) for decadal timesteps from 2015 to 2085</p>
DOI: 10.25903/ypyg-0p08
title: Data from: Swimming performance of marine fish larvae:  review of a universal trait under ecological and environmental pressure

description: <p>The study reviews how swimming performance develops in teleost larvae. The study reviews the swimming anatomy that develops, the methods used to swim larvae, and the impacts of environmental stressors on performance.</p>
<p>Methodology: The study reviews how larval fishes develop the ability to swim. A systematic literature search found all relevant studies for the analysis. The review was divided into three sections. The first section investigates the anatomical and physiological structures/processes that support swimming that develops during early ontogeny of larval fishes. This was complimented with a short analysis comparing how larval fish swimming performance (i.e., average performance) differs between latitude (tropical, sub tropical and temperate). This analysis was complimented by a comparison of swimming performance between reef fishes and herring species to show the influence of latitude on swimming. These two analyses set-up the aims for the next chapter of my PhD thesis. The next aim discusses the ecological and practical applications to swimming performance metrics. The third aim uses a meta-analysis approach to investigate how environmental stressors impact swimming performance of fishes from different latitudes. </p>
<p>The data consists of 4 files in comma-separated values (.csv) format and a metadata file (.txt) that includes all of the variables, labels and units.</p>
<p>The data files are:</p>
<table style="border-collapse: collapse; width: 100%;" border="1">
<tbody>
<tr>
<td style="width: 49.7893%;">Files</td>
<td style="width: 49.7893%;">File Description</td>
</tr>
<tr>
<td style="width: 49.7893%;">1.DOWNIE_Chpt2_metadata.txt</td>
<td style="width: 49.7893%;">Metadata file including all of the variables, labels and units</td>
</tr>
<tr>
<td style="width: 49.7893%;">2. DOWNIE_PhD_Chpt2_ReynoldsNumber&ontogeny.csv</td>
<td style="width: 49.7893%;">Reynolds number over ontogeny and region data </td>
</tr>
<tr>
<td style="width: 49.7893%;">3. DOWNIE_PhD_Chpt2_growth coefficients.csv</td>
<td style="width: 49.7893%;">Growth coefficients over larval duration and region data</td>
</tr>
<tr>
<td style="width: 49.7893%;">4. DOWNIE_PhD_Chpt2_PerciformesVClupeiformes.csv</td>
<td style="width: 49.7893%;">Reynolds number of perciforme and clupeiformes data</td>
</tr>
<tr>
<td style="width: 49.7893%;">5. DOWNIE_PhD_Chpt2_Environmental stress Meta-analysis.csv</td>
<td style="width: 49.7893%;">Impact of environmental stress on swimming performance data</td>
</tr>
</tbody>
</table>
DOI: 10.15468/dl.cb22sj
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Altopedaliodes pasicles (Hewitson, 1872)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006313-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqw44d
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caldisphaera lagunensis Itoh et al., 2003",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108554-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dpgv79
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum cylindrocarpum Frapp. ex Cordem."
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074367-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3vxzj
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2014-2019",
 "Geometry POLYGON((-98.19352 29.96181,-97.46293 29.96181,-97.46293 30.92861,-98.19352 30.92861,-98.19352 29.96181))",
 "HasCoordinate is true",
 "TaxonKey is Canis latrans Say, 1823"
 ]
}

 The dataset includes 297 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012933-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fpvt2c
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arisaema barnesii C.E.C.Fisch."
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011277-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nn74ad
title: Occurrence Download

description: A dataset containing 50399 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erophila verna (L.) Chevall."
 ]
}

 The dataset includes 50399 records from 221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117249-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oyxguv
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Diplazium striatastrum Lellinger",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 240 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012940-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbhyzn
title: Occurrence Download

description: A dataset containing 5376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ricinus communis L."
 ]
}

 The dataset includes 5376 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0121622-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3fyznj
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craterispermum gabonicum Taedoumg & De Block"
 ]
}

 The dataset includes 86 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011201-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucaohh
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Polianthes graminifolia Rose"
 ]
}

 The dataset includes 29 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012934-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zjkhg
title: Occurrence Download

description: A dataset containing 1114 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((33.62915 46.25585,33.29956 45.9053,32.20093 45.56791,32.17896 45.10455,32.75024 44.32385,35.67261 44.26094,36.52954 44.79353,36.57349 45.15105,36.68335 45.4293,36.37573 45.58329,35.7605 45.55253,35.36499 45.4293,35.14526 45.81349,34.59595 46.04274,33.98071 46.13417,33.62915 46.25585))",
 "Geometry POLYGON((33.69507 44.21371,34.59859 44.44418,34.96202 44.53663,35.95606 44.78875,36.52954 44.9337,36.61743 45.4293,36.57349 45.64477,35.21118 45.81349,34.74976 46.10371,34.24438 46.10371,33.76099 46.19504,33.40942 45.99696,32.90405 45.95115,32.2229 45.46013,32.37671 45.15105,32.88208 44.9648,33.10181 44.85587,33.69507 44.21371))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "TaxonKey is Clinopodium serpyllifolium (M.Bieb.) Kuntze",
 "TaxonKey is Eremogone saxatilis (L.) Ikonn.",
 "TaxonKey is Himantoglossum caprinum (M.Bieb.) Spreng.",
 "TaxonKey is Gymnadenia conopsea (L.) R.Br.",
 "TaxonKey is Dactylorhiza incarnata (L.) Soó",
 "TaxonKey is Corallorhiza trifida Châtel.",
 "TaxonKey is Scilla bifolia L.",
 "TaxonKey is Convallaria majalis L.",
 "TaxonKey is Adonis vernalis L.",
 "TaxonKey is Tulipa sylvestris subsp. australis (Link) Pamp.",
 "TaxonKey is Tulipa suaveolens Roth",
 "TaxonKey is Tulipa biflora Pall.",
 "TaxonKey is Ferula caspica M.Bieb.",
 "TaxonKey is Ruppia maritima L.",
 "TaxonKey is Ruppia cirrhosa (Petagna) Grande"
 ]
 },
 {
 "or" : [
 "Year is greater than or equal to 1900",
 "Year 1000-2021"
 ]
 }
 ]
}

 The dataset includes 1114 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0343441-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xuufer
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is EN",
 "TaxonKey is Loddigesia mirabilis (Bourcier, 1847)"
 ]
}

 The dataset's 1 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059236-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gz8bu3
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platymiscium parviflorum Benth."
 ]
}

 The dataset includes 229 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041638-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lygjm3
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Detarium heudelotianum Baill."
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012932-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.