cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23641/asha.24158745.v1
title: Musical rhythmic grouping production in DLD (Kreidler et al., 2023)

description: <b>Purpose:</b> Children with developmental language disorder (DLD) show evidence of domain-general deficits in sequentially patterned motor skills. This study focuses on the production of rhythmically grouped sequences drawn from a music task, with the hypothesis that children with DLD will show a sequential pattern learning deficit that crosses language and action domains.<b>Method:</b> Fifty-seven 4- to 5-year-old children (36 with DLD) drummed and clapped a developmentally appropriate musical rhythmic sequence 24 times (clapped 12 times, drummed 12 times). The accuracy of rhythmic events (markings of claps, drums, and pauses in a target sequence) was assessed through a modification of classic speech and language transcription procedures. The variability and prosodic structure of the rhythmic groupings were also measured.<b>Results:</b> Children with DLD produced less accurate and more variable rhythmic groupings compared to their typically developing (TD) peers. While the final-position grouping of the sequence was especially vulnerable for all children, those with DLD included more co-occurring errors in initial and final groupings of the same rhythmic sequence. Both TD children and children with DLD were less accurate in the clapping than the drumming task. Neither rhythmic drumming nor clapping accuracy correlated with motor skill in either group of children.<b>Conclusions:</b> This study provides novel evidence of a manual rhythmic grouping deficit in DLD, one that is motivated by language—not motor or speech—factors. Cognitive abilities necessary to organize rhythmic events into higher order groupings are impaired across music and language in children with DLD. Rhythmic organization and sequencing may serve an important role in diagnosis and intervention in this population.<b>Supplemental Material S1.</b> Motor and rhythmic accuracy means, standard deviations, and correlations in TD group (<i>n</i> = 21).<b>Supplemental Material S2.</b> Motor and rhythmic accuracy means, standard deviations, and correlations in DLD group (<i>n</i> = 33).<b>Supplemental Material S3.</b> Speech sound and rhythmic accuracy means, standard deviations, and correlations in DLD group (<i>n</i> = 36).Kreidler, K., Vuolo, J., & Goffman, L. (2023). Children with developmental language disorder show deficits in the production of musical rhythmic groupings. <i>Journal of Speech, Language, and Hearing Research</i>. Advance online publication. https://doi.org/10.1044/2023_JSLHR-23-00197
DOI: 10.6084/m9.figshare.21154486.v2
title: Traffic Condition Dataset

description: Traffic Condition Dataset
DOI: 10.17632/kxvgfrrpxs
title: Dataset: How Do the Criteria Affect Sustainable Supplier Evaluation? - A Case Study Using Multi-Criteria Decision Analysis Methods in a Fuzzy Environment

description: Dataset from How Do the Criteria Affect Sustainable Supplier Evaluation? - A Case Study Using Multi-Criteria Decision Analysis Methods in a Fuzzy Environment
DOI: 10.17632/p73jxxyfxr
title: rar data et code estimations

description: data et code estimations
DOI: 10.17632/b5vdycf447
title: False Memories in Bilinguals: Integration of Information Across Languages and Limits on Proficiency Effects

description: Data set for submitted manuscript by Bianca V. Gurrola and Wendy S. Francis with the same title. A full description of the hypotheses, methodology, and results is given in the manuscript.

The Summary Data folders have the files from which data were copied into SPSS for analysis.
DOI: 10.6084/m9.figshare.17128658.v1
title: Supplementary Material for: Effects of washed microbiota transplantation on serum uric acid levels, symptoms and intestinal barrier function in patients with acute and recurrent gout: a pilot study

description: Introduction: Gut dysbiosis has been reported to be closely associated with gout. Washed microbiota transplantation (WMT) is considered as an effective way to restore a healthy gut microbiota with less adverse events than the conventional fecal microbiota transplantation. In this study, we aimed to evaluate the effects of WMT on serum uric acid levels, symptoms and the intestinal barrier function in patients with acute and recurrent gout. Methods: We performed a pilot study of WMT for acute and recurrent gout. The primary outcome was the changes in serum uric acid level and gout symptoms. The secondary outcomes included the changes in levels of diamine oxidase (DAO), D-lactic acid and endotoxin. Results: Eleven patients received WMT treatment. The averaged serum uric acid levels in patients with gout reduced after WMT (P = 0.031), accompanied with a decrease in the frequency and duration time of acute gout flares (P &lt; 0.01). The levels of DAO, D-lactic acid and endotoxin were higher in patients than in healthy donors (P &lt; 0.05). After WMT treatment, the levels of DAO and endotoxin decreased (P &lt; 0.05). Conclusions: WMT is effective for reducing serum uric acid levels and improving gout symptoms in patients with gout, and contributes to improve their impaired intestinal barrier function.
DOI: 10.17632/3vgvxz4v2x
title: Veins in Gaspesie

description: Data of bed thickness, fracture spacing, vein thickness measured from calcareous graywacke beds in the Humber zone, Gaspesie, Quebec Canada.
DOI: 10.6084/m9.figshare.12052380.v1
title: Supplementary Material for: Coronavirus Disease 19 Infection Does Not Result in Acute Kidney Injury: An Analysis of 116 Hospitalized Patients from Wuhan, China

description: <b><i>Background:</i></b> Whether the patients with coronavirus disease 19 (COVID-19) infected by severe acute respiratory syndrome (SARS)-CoV-2 would commonly develop acute kidney injury (AKI) is an important issue worthy of clinical attention. This study aimed to explore the effects of SARS-CoV-2 infection on renal function through analyzing the clinical data of 116 hospitalized COVID-19-confirmed patients. <b><i>Methods:</i></b> One hundred sixteen COVID-19-confirmed patients enrolled in this study were hospitalized in the Department of Infectious Diseases, Renmin Hospital of Wuhan University from January 14 to February 13, 2020. The recorded information includes demographic data, medical history, contact history, potential comorbidities, symptoms, signs, laboratory test results, chest computer tomography scans, and treatment measures. SARS-CoV-2 RNA in 53 urine sediments of enrolled patients was detected by real-time reverse transcription-polymerase chain reaction. <b><i>Results:</i></b> Twelve (10.8%) patients showed mild increase of blood urea nitrogen or creatinine (&lt;26 μmol/L within 48 h), and 8 (7.2%) patients showed trace or 1+ albuminuria in 111 COVID-19-confirmed patients without chronic kidney disease (CKD). All these patients did not meet the diagnostic criteria of AKI. In addition, 5 patients with CKD who were undergone regular continuous renal replacement therapy (CRRT) before admission were confirmed infection of SARS-CoV-2 and diagnosed as COVID-19. In addition to therapy for COVID-19, CRRT was also applied 3 times weekly during hospitalization for these 5 patients with CKD. In the course of treatment, the renal function indicators showed stable state in all 5 patients with CKD, without exacerbation of CKD, and pulmonary inflammation was gradually absorbed. All 5 patients with CKD were survived. Moreover, SARS-CoV-2 RNA in urine sediments was positive only in 3 patients from 48 cases without CKD, and 1 patient had a positive for SARS-CoV-2 open reading frame 1ab from 5 cases with CKD. <b><i>Conclusion:</i></b> AKI was uncommon in COVID-19. SARS-CoV-2 infection does not result in AKI, or aggravate CKD in the COVID-19 patients.
DOI: 10.6084/m9.figshare.14052326.v1
title: Supplementary Material for: Magnetic Resonance Imaging May Be Able to Identify the Origin of Neuroendocrine Tumor Liver Metastases

description: <b><i>Objectives:</i></b> The aim of the study was to discriminate hepatic metastases from pancreatic neuroendocrine tumors (pNET) and hepatic metastases from midgut neuroendocrine tumors (mNET) with magnetic resonance imaging (MRI). <b><i>Methods:</i></b> MRI examinations of 24 patients with hepatic metastases from pNET were quantitatively and qualitatively assessed by 2 blinded readers and compared to those obtained in 23 patients with hepatic metastases from mNET. Inter-reader agreement was calculated with kappa and intraclass correlation coefficient (ICC). Sensitivity, specificity, and accuracy of each variable for the diagnosis of hepatic metastasis from pNET were calculated. Associations between variables and primary tumor (i.e., pNET vs. mNET) were assessed by univariate and multivariate analyses. A nomogram was developed and validated using an external cohort of 20 patients with pNET and 20 patients with mNET. <b><i>Results:</i></b> Interobserver agreement was strong to perfect (<i>k</i> = 0.893–1) for qualitative criteria and excellent for quantitative variables (ICC: 0.9817–0.9996). At univariate analysis, homogeneity on T1-weighted images was the most discriminating variable for the diagnosis of pNET (OR: 6.417; <i>p</i> = 0.013) with greatest sensitivity (88%; 21/24; 95% CI: 68–97%). At multivariate analysis, tumor homogeneity on T1-weighted images (<i>p</i> = 0.007; OR: 17.607; 95% CI: 2.179–142.295) and target sign on diffusion-weighted images (<i>p</i> = 0.007; OR: 19.869; 95% CI: 2.305–171.276) were independently associated with pNET. Nomogram yielded a corrected AUC of 0.894 (95% CI: 0.796–0.992) for the diagnosis of pNET in the training cohort and 0.805 (95% CI: 0.662–0.948) in the validation cohort. <b><i>Conclusions:</i></b> MRI provides qualitative features that can help discriminate between hepatic metastases from pNET and those from mNET.
DOI: 10.17632/fyc4w6f2wr
title: An improved version of the Green's function molecular dynamics method

description: Abstract This work presents an improved version of the Green's function molecular dynamics method (Kong et al., 2009; Campañá and Müser, 2004 [1,2]), which enables one to study the elastic response of a three-dimensional solid to an external stress field by taking into consideration only atoms near the surface. In the previous implementation, the effective elastic coefficients measured at the Γ-point were altered to reduce finite size effects: their eigenvalues corresponding to the acoustic modes were... Title of program: FixGFC/FixGFMD v1.12 Catalogue Id: AECW_v1_1 Nature of problem Green's function molecular dynamics (GFMD) is a coarse-graining method that enables one to investigate the full elastic response of an interface between a semi-infinite solid and a contact while taking only the surface atoms in the solid into consideration. The effect of long-range elastic deformations on the surface atoms from the semi-infinite solid is replaced by effective elastic interactions, thus reducing the problem from three dimensions to two dimensions without compromising the physical ... Versions of this program held in the CPC repository in Mendeley Data AECW_v1_0; FixGFC/FixGFMD; 10.1016/j.cpc.2008.12.035 AECW_v1_1; FixGFC/FixGFMD v1.12; 10.1016/j.cpc.2010.10.006 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/yzkv39ppsz
title: Versatile tools for masking and annotation of plastid genomes: cpanno and masker

description: Versatile tools for masking and annotation of plastid genomes: cpanno and masker.

Markus Kiefer*, Christiane Kiefer, Marcus A. Koch

Universität Heidelberg, Centre for Organismal Studies (COS), 69120 Heidelberg, Germany
* Author for correspondence

cpanno.py is a Python helper script to transfer annotation from a reference to (e.g.) an assembled sequence via a Genbank GFF table. Generation of a graphical overview is possible. As prerequisites it relies on the MAFFT alignment program, the Biopython module and the seqret tool from the EMBOSS package. A usage message is implemented to output program options. 

masker.sh is a BASH shell script that uses seqret from the EMBOSS package, the Python script cpanno and bedtools to mask uncallable regions in an assembly. If indels are present in the de novo assembled sequence relative to the reference sequence used in a reference based assembly, the positions to be masked will be adjusted accordingly. A usage message is implemented to output program options.

The tools have been successfully tested and used (cited there as inhouse scripts):

cpanno:

Stein R.E., Luque-Fernández C.R., Kiefer, C., Möbus J., Pauca-Tanco G.A., Jabbusch S., Harpke D., Bechteler J., Quandt D., Villasante F., Koch M.A. (2023) Climate-driven past and present interspecies gene flow may have contributed to shape microscale adaptation capacity in Tillandsia lomas in hyperarid south American desert systems. Global and Planetary Change, https://doi.org/10.1016/j.gloplacha.2023.104258

cpanno and masker:

Hendriks K.P., Kiefer C., Al-Shehbaz I.A., Bailey D., Hooft van Huysduynen A., Nikolov L.A., Nauheimer L., Zuntini A.R., German D.A., Franzke A., Koch M.A., Lysak M.A., Toro-Nunez O., Özudogru B., Invernón V.R., Walden N., Maurin O., Hay N.M., Shushkov P., Mandakova T., Schranz M.E., Thulin M., Windham M.D., Resetnik I., Spaniel S., Ly E., Pires J.C., Harkess A., Neuffer B., Vogt R., Bräuchler C., Rainer H., Janssens S.B., Schmull M., Forrest A., Guggisberg A., Zmarzty S., Lepschi B.J., Scarlett N., Stauffer F.W., Schönberger I., Heenan P., Baker W.J., Forest F., Mummenhoff K., Lens F. (2023) Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset. Current Biology 33: 1-17. https://doi.org/10.1016/j.cub.2023.08.026

Koch M.A., Kiefer C., Möbus J., Quandt D., Merklinger D., Harpke D., Villasante Benavides F. (2022) Range expansion and contraction of Tillandsia landbeckii lomas in the hyperarid Chilean Atacama Desert indicates ancient introgression and geneflow. Perspectives in Plant Ecology, Evolution and Systematics 56: 125689. https://doi.org/10.1016/j.ppees.2022.125689
DOI: 10.6084/m9.figshare.19222746.v3
title: REDSCAT2

description: Dataset with players positions and match tracking. <br> The available data represents a single match, with the track on the field and the position of the players at all frames in the second half of the match. (This situation was chosen because it had different events, such as substitution and red card). <br> ----- Files .ant ----- The .ant files represent the tracking actions of players, where 1st column: frame of the moment when the technical action was performed; 2nd column: player number. 3rd and 4th column: X and Y coordinates of the player who performed the technical action; 5th column: technical action performed: <br> 0 - Domain 1 - Pass 2 - Dribble 3 - Kick 4- Kick (head) 5 - Tackling - lower body 6 - Tackling superior 7- Defender-goalkeeper 8- Fair-play 9- Goal kick 10 - Full-back 11- Corner 12- Free-kick 13 - Foul 14 - Goal 15 - conduction <br> 6th column: warns if the action was right (1) or wrong (0). For conduction (action 15), we do not discriminate 0 or 1, that is, it will always remain 0. <br> ----- Files .2d ----- These files represent the information of the position of each player, where the positions are divided by x and y of each of them. Thus, the first 28 columns represent team A, and the next 28 the team B, initially the first 22 columns of both team have information because the rest of them is the possibility of substitution, when this action occurs the player that leaves gets a position equals a -9999, and the new player now has values different from -9999. <br>
DOI: 10.15468/dl.quxpkq
title: Occurrence Download

description: A dataset containing 7652 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Noctua fimbriata Schreber, 1759"
 ]
}

 The dataset includes 7652 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009204-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28087304.v2
title: Genome assemblies of 2365 <i>S. pyogenes </i> isolates analysed and published on <i>Nature Communications </i>in 2024

description: Citation:Vieira, A., Wan, Y., Ryan, Y. <i>et al.</i> Rapid expansion and international spread of M1<sub>UK</sub> in the post-pandemic UK upsurge of <i>Streptococcus pyogenes</i>. <i>Nat Commun</i> <b>15</b>, 3916 (2024). https://doi.org/10.1038/s41467-024-47929-7File format: 7-Zip compressedMetadata: Pathogenwatch | M1UK and intermediates: Vieira et al. (2024)Update note: Reuploaded genome assemblies on 9 February 2025 with isolate names completely matching those described in our paper.
DOI: 10.17632/9kwjrxgvmy
title: Calcium bentonite and sodium bentonite as stabilizers for roads unbound

description: The dataset deals with a laboratory investigation of bentonite clay employed as a stabilization technology for road unbound layers. Two types of bentonite clays are investigated, namely calcium based bentonite (CaB) and sodium based bentonite (NaB). Two types of aggregates are characterized as stabilized materials, namely crushed rock aggregates (CRA) and natural gravel aggregates (NGA). Untreated aggregates (Unbound Granular Material, UGM) are also tested for comparison purpose.

A total of 12 samples – 2 replicate samples for each condition – are tested dried (w=0%) by means of Repeated Load Triaxial Test (RLTT). The dataset reports raw data and pictures. 

RLTTs are performed following the code “EN 13286-7 Cyclic load triaxial test for unbound mixtures” according to Multi-Stage Low Stress Level (MS LSL) testing procedure. The spreadsheets displaying the RLTTs results report the dynamic stress and the triaxial stress exerted in the testing device as well as the axial strains and the radial strains measured by a total of six Linear Variable Differential Transformers (LVDTs).
DOI: 10.17632/sx9gj2mhhm
title: Mixing enhancement mechanisms in aquifers affected by hydropeaking: Insights from flow-through laboratory experiments

description: In this study, we performed flow-through experiments to investigate transport processes in a laboratory setup mimicking an aquifer affected by hydropeaking. We performed five flow-through experiments: steady flow experiment, steady flow experiment with river system by keeping the head of both rivers equal to the groundwater table, and finally three transient flow experiments (that will be described in the texts as transient flow 1, transient flow 2 and transient flow 3) considering two time series of fluctuating river heads. We performed high-resolution image analysis, and depth-resolved, high-frequency sampling at the outlet of the flow-through chamber to monitor the evolution and the breakthrough of the tracer plume in the porous medium. The dataset contains: 1. The tracer concentration normalized by the initial concentration at the outlet of the flow-through chamber obtained from the optical analysis for the five experiments. 2. The tracer concentration normalized by the initial concentration obtained from the spectrophotometric analysis of the samples collected at the outlet of the flow-through chamber for the five experiments. 3. The results of the normalized second central spatial moments of the solute distribution (-), volumetric reactor ratio (-) and flux-related reactor ratio (-) for the five experiments.
DOI: 10.6084/m9.figshare.16817476.v1
title: Data for the paper: Nutrition and congruent care improve wellbeing and reduce prescription drug use in elderly with dementia in Slovenian residential care homes

description: This dataset contains the data for statement evaluation (qualitative analysis and comparative analysis) and the data for PRN medication use from the paper: "Nutrition and congruent care improve wellbeing and reduce prescription drug use in elderly with dementia in Slovenian residential care homes"
DOI: 10.17632/tcvjbxm5y4
title: Journal of Studies in Religion, Spirituality & Management; No.3

description: (1) Students, scholars and practitioners of spirituality as pertaining to management and organizations,

(2) Management academics and practicing managers,
(3) Scholars in religion studies and of religious affairs.

JSRSM serves as a meeting forum and fosters cross-fertilisation in these communities. We encompass, without prejudicing any belief or none, a multitude of interests and concerns. JMSR wishes to define the field through conceptual, theoretical and empirical understandings of JSRSM that include: interdisciplinary and multi-methodological approaches—all spiritual and religious traditions—examining the relationship between JSRSM and society – critical, theological and philosophical reflections on JSRSM—metaphysical explanations of JSRSM. It wishes to encompass, without prejudging any belief or none, a multitude of interests and concerns. Our sole criterion is academic rigour and scientific merit. It seeks to define the field through conceptual, theoretical and empirical understandings of RSM that include:

• Examining RSM through different traditions
• Exploring the relationship between RSM and society
• Critical and interdisciplinary work that may extend the boundaries of RSM
• Metaphysical explanations of RSM
DOI: 10.6084/m9.figshare.928573.v5
title: Panama bacterial phyllosphere sequences

description: Bacterial 16S rRNA gene sequence data (chloroplast-excluding primers 799f/1115r) and metadata for bacterial communities sampled from plant leaf surfaces on Barro Colorado Island, Panama. Data collection procedures are described in the paper "Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest" by Kembel et al. (manuscript in press at PNAS). Multiple sets of files are included in this data archive: <strong>bacteria_phyllosphere_metadata.txt</strong> - a tab-delimited text file with information on barcode sequences and host species identity for each sample. The columns of the text file include a sample identifier (SampleID), forward and reverse barcode sequences* (ForwardBarcodeSequence and ReverseBarcodeSequence), and the identity of the host plant species from which each sample was collected (HostSpecies). * note that in the raw sequence data, a combinatorial or dual-index barcoding approach was used to uniquely identify samples. The first 6bp of the barcode are on the forward read, and the final 6bp of the barcode are on the reverse read. The barcodes will need to be combined into a single 12bp construct prior to parsing into samples, or parsed with software capable of processing dual-indexed sequences. <strong>phyllobacteria.fastq.tgz.part-xx</strong> - raw sequence data in FASTQ format, produced by a sequencing run using Illumina HiSeq 150bp paired-end sequencing technology. Due to file size limitations, the original tar/gzip archives have been split into multiple parts. To recombine and uncompress the sequence files, the following command works in a Linux/Unix environment: cat phyllobacteria.fastq.tgz.part-* | tar xz
DOI: 10.17632/jpctd7tbbk
title: Evaluating the impact of sowing dates on cereal yields in Morocco's Favorable agro-ecological zone using the CARAIB DVM and regional climate projections from the Euro-CORDEX initiative

description: This dataset is designed to evaluate the impacts of varying sowing dates on cereal yields (soft wheat, durum wheat, and barley) in Morocco's Favorable agro-ecological zone using the CARAIB dynamic vegetation model, driven by four regional climate models (RCMs) from the Euro-CORDEX initiative. The primary objective is to develop adaptive agricultural strategies to optimize cereal production under changing climate conditions.
DOI: 10.17632/hsxzs9gbnk
title: Análisis del desarrollo de la economía campesina y familiar en la subregión del sur del Tolima en el marco de la implementación de los Programas de Desarrollo con Enfoque Territorial (PDET).