cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19122200.v1
title: Supplementary Material for: Analgosedation before Less-Invasive Surfactant Administration: A Systematic Review

description: <b><i>Background:</i></b> Surfactant therapy is the cornerstone of respiratory distress syndrome management. “Less-invasive surfactant administration (LISA)” is now recommended for spontaneously breathing preterm infants. Analgosedation remains controversial as 52% of European neonatologists do not use any. This systematic review aims to describe the efficacy and safety of different drugs for analgosedation during LISA. <b><i>Methods:</i></b> MEDLINE via Ovid, Embase, Scopus, and Cochrane Library of Trials were searched independently by 2 reviewers for studies on sedation or analgesia for LISA, without filters or limits. <b><i>Results:</i></b> Eight studies (1 randomized controlled trial) recruiting 945 infants were included. Infant pain was significantly reduced, with more infants evaluated as comfortable. Failure, defined as need for intubation or for a second dose of surfactant, was not different between sedated and unsedated groups. Analgosedation was associated with a higher occurrence of desaturation and need for positive pressure ventilation during procedure, but the need for mechanical ventilation within 24 or 72 h of life was not significantly different. There does not seem to be any difference in clinical tolerance and complications (e.g., hypotension, mortality, air leaks, etc.). Procedural conditions were evaluated as good or excellent in 83% after sedation. <b><i>Discussion and Conclusion:</i></b> Analgesia or sedative drugs increase infant comfort and allow good procedural conditions, with a limited impact on the clinical evolution. Questions remain about the best choice of drugs and dosages, with the constraint to maintain spontaneous breathing and have a rapid offset. Further good quality studies are needed to provide additional evidence to supplement those limited existing data.
DOI: 10.6084/m9.figshare.22691434.v1
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.29150789.v1
title: Escape Room Pensamiento computacional

description: Un escape room sobre retos de cada una de las habilidades del pensamiento computacional.<br>
DOI: 10.17632/xx2fyny36k
title: LINF_170021900

description: Calcium channel protein; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.7053815.v1
title: Dataset for: Tripeptide binding in a Proton-Dependent Oligopeptide Transporter

description: Proton-dependent oligopeptide transporters (POTs) are important for uptake of di-/tripeptides in many organisms and for drug transport in humans. The binding mode of dipeptides has been well described. However, it is still debated how tripeptides are recognized. Here we show that tripeptides of the sequence Phe-Ala-Xxx bind with similar affinities as dipeptides to the POT transporter from Streptococcus thermophilus (PepTSt). We furthermore determined a 2.3-Å structure of PepTSt in complex with Phe-Ala-Gln. Here the phenylalanine and alanine residues of the peptide adopt the same positions as previously observed for the Phe-Ala dipeptide, while the glutamine side chain extends into a hitherto uncharacterized pocket. This pocket is adaptable in size and can likely accommodate a wide variety of peptide side chains.
DOI: 10.17632/bhrn8xsv2k
title: Climate-related risk stress testing in the Russian banking sector under NGFS scenarios

description: The database focuses on the impact of climate on countries' economic development under different scenarios, including the impact of climate risks on the financial stability of systemically important credit institutions in the transition to a carbon-neutral economy. In particular, the objective of our study was to conduct a climate stress test of the largest Russian banks. The study's objectives therefore included: identifying climate risk and approaches to its classification; analysing the ecological condition of economic territories and the structure of corresponding greenhouse gas emissions; analysing baseline scenarios for the transition to a low-carbon economy proposed by the NGFS; assessing the impact of climate factors on environmental and economic indicators in terms of the proposed scenarios; conducting stress-testing of the analysed banks; and expert evaluation of the carbon-beta index of three major Russian banks. As a result of the study, the environmental conditions in the US, Russia and 15 European countries and the impact of environmental factors under the three main NGFS scenarios on the main economic and environmental indicators of these economic territories were assessed. In addition, stress testing of the resilience to climate change of three systemically important Russian banks was carried out, an assessment of the impact of environmental factors on the profitability of the analysed banks was substantiated, the carbon-beta index was adapted for these banks, and recommendations for the ESG-transformation of their businesses were developed.
DOI: 10.17632/c73dx2xfdm
title: Data for: A survey of the crystallography-dependency of twist grain boundary mobility in Al based on atomistic simulations
DOI: 10.6084/m9.figshare.24826332.v1
title: Influence of air-sea CO2 disequilibrium on biological carbon pump sequestration inventories and timescales

description: This dataset provides output from carbon sequestration calculations presented in the following paper: Nowicki, M., DeVries, T., & Siegel, D. A. (2024). The influence of air-sea CO2 disequilibrium on carbon sequestration by the ocean's biological carbon pump. <i>Global Biogeochemical Cycles</i>.The dataset provides dissolved inorganic carbon (DIC) concentrations computed using the full nonlinear and linearized models under both instantaneous and realistic gas exchange scenarios, as described in the above referenced paper. The average sequestration times under both gas exchange scenarios are also included, as well as the air-sea CO2 equilibration timescale and biological DIC flux (referred to as Jbio in the paper) vectors used in all of these computations. The dataset also provides the fraction of biogenic DIC sequestered for 0-1000 years under both gas exchange scenarios, referred to as f(x,t) in Equation 9 and used to create Figure 5 in the above referenced paper. This dataset only includes years 0-1000 of the 7000 year simulation shown in Figure 5. Longer simulations can be obtained by contacting the author. Also included is a MATLAB script with examples for creating some of the figures. The script loads in the dataset and extracts the relevant variables for computing the DIC inventories shown in Table 2, as well as for creating Figures 1-5. If using this dataset, please cite the original publication of Nowicki et al. (2024).
DOI: 10.6084/m9.figshare.27224406.v1
title: Dataset

description: Data set related to the research project "PREVALENCE AND FACTORS ASSOCIATED WITH LITERACY AND SELF-PERCEPTION IN ORAL HEALTH OF ELDERLY INDIVIDUALS TREATED AT A CENTER".This is a cross-sectional study that will be conducted with elderly people of both sexes who make prior appointments for dental consultations at a Reference Center for Elderly Health Care (CRASI), located in the north of Minas Gerais, during the period from June to August 2023.
DOI: 10.17632/ydbv9t8fzr
title: Applying Machine Learning and Quantum Chemistry to Predict the Glass Transition Temperatures of Polymers

description: Developing models to predict glass transition temperatures (Tgs) of polymers is of significant importance given how the parameter quantifies the physical and thermal characteristics of these materials. These characteristics inform numerous functional properties of polymers as well as how they degrade both through intended use as well as through environmental mechanisms that result from end-of-life environmental deposition. For this reason, various models have been developed for predicting Tg from structural information to aid in designing novel polymer materials. These existing models, however, typically focus on utilizing one specific modeling technique to train a single class or set of polymers. To expand and explore the applicability of Tg models for predictions of new materials this work (1) utilizes both machine learning (ML) and quantum chemistry (QC) based techniques to investigate different data availability scenarios and (2) does not constrain the training datasets to any specific class of polymers. This methodology allows for a comparison of different techniques and situations to determine the applicability of Tg models when making predictions for novel polymer structures.
DOI: 10.6084/m9.figshare.15162708.v2
title: Supplementary File S3c – Omicsbox GFF3 annotation of protein coding genes in the contigs

description: This file contains functionally annotated protein-coding genes for the O. australiensis Keep River assembly in Contig form at NCBI: JAIFGZ000000000.
DOI: 10.6084/m9.figshare.21197479.v3
title: Martynenko et al., 2022 Cryptomonas tropica Table S1

description: This table contains names of species, strains, their SSU, LSU+ITS2 rDNA and psbA cpDNA Accession Numbers in GenBank, and also country, habitat and source of their origin.
DOI: 10.6084/m9.figshare.22674982.v2
title: Imports, Exports, and Employment: India’s Trading Relationship with China

description: This paper examines the effect of increased import competition and export demand on local labour markets in the context of India's trading relationship with China. Using an instrumental variables approach, I find that Indian districts exposed to Chinese imports experience decreased manufacturing employment growth relative to their positive pre-existing trend with no offsetting adjustment in services employment or population. The negative employment effect of imports is greater for large establishments. On average, manufacturing employment does not grow in response to export demand shocks, but districts with sufficient development, density, or access to Chinese markets see increased manufacturing employment in response to Chinese export demand.
DOI: 10.6084/m9.figshare.24607614.v1
title: Dark-sectioning

description: This is the Supplementary Data for Dark sectioning, which code can be downloaded from Github(https://github.com/Cao-ruijie/Dark-sectioning). Ruijie Cao and Prof. Peng Xi claim an Apache license for this.
DOI: 10.6084/m9.figshare.1613413.v1
title: The supplementation of branched-chain amino acids, arginine, and citrulline improve endurance exercise performance in two consecutive days

description: The effects of branched-chain amino acids, arginine, and citrulline on 5000 m and 10000 m time-trial in 2 consecutive days, including time-trial results and blood biochemical analysis.
DOI: 10.6084/m9.figshare.28465391.v1
title: Supplementary Table 4: ASV table for the lakes with taxonomy

description: Metabarcoding and metagenomics analysis of six dune lakes on the Chatham Islands.
DOI: 10.6084/m9.figshare.8396918.v1
title: Emotional reactions to immigration and support for EU cooperation on immigration and terrorism

description: What explains variation in European citizens’ support for common EU immigration and counter-terrorism policies? We advance extant literature that focuses on the utility versus identity debate by focusing on individuals’ emotional reactions. Drawing on theories of affect, we show that citizens’ emotions about immigration are integral to their preferences for EU cooperation on the dual questions of immigration and terrorism. We hypothesise that while anger about immigration is associated with opposition to cooperation on both policies, fear about immigration is associated with support for a common EU counter-terrorism strategy. Using a large-N cross-sectional survey conducted in Germany and the Netherlands, our analyses confirm our hypotheses. Our findings have implications for the progress of European integration and the scope of public approval of EU common policies.
DOI: 10.17632/kpx5pbwkvz
title: The link between Fullerton Fitness Test and psychological well being in older adults

description: Physical fitness and functioning are related to better mental health in older age. However, which fitness components (body composition, strength, flexibility, coordination, and endurance) are more closely related to psychological well-being (PWB) is unclear. This research examined how body mass index (BMI) and six indices of functional fitness (i.e., lower and upper body strength, lower and upper body flexibility, coordination [based on agility and balance], and aerobic endurance) relate to five psychological measures that could mirror PWB (i.e., resilience, mental well-being, optimism, life satisfaction, and happiness). Thirty-nine older adults (60-94 years; two-thirds female) were examined with the Fullerton Functional Fitness Test (FFFT) after completing five psychometric instruments. Data were analyzed with ordinary least squares regression and then with elastic net regression, calculating the Lindeman, Merenda, and Gold (LMG) indices of the relative importance of the six FFFT components separately for the five psychological measures. Results revealed that BMI, upper body strength, and upper body flexibility were the least significant predictors of PWB. In contrast, lower body flexibility emerged as the most significant predictor, while endurance and, to a lesser extent, coordination were also predictors in some of the PWB measures. These findings should stimulate research on the mechanism connecting lower body flexibility with PWB. Further, apart from their novelty, the findings could be valuable in designing physical fitness programs targeting mental and physical health for older people.
DOI: 10.6084/m9.figshare.13003394.v1
title: Set 2_S4_molecule

description: Renal artery stenosis (RAS) engenders stenotic-kidney ischemia, dysfunction, and injury, but whether these are mediated by cellular senescence has not been elucidated. Using INK-ATTAC transgenic mice, high-resolution imaging, and unbiased scRNA-sequencing of murine kidneys, the authors identified cellular senescence as an important mechanism of progressive injury triggered in renal epithelial/stromal cells within post-stenotic kidneys. Both P16-specific and broad quercetin/dasatinib interventions to blunt senescence improved renal function and structure, underscoring its central role in the pathogenesis of the disease. Furthermore, this mechanism was conserved in human subjects with RAS. These observations reveal new mechanisms that contribute to the pathogenesis of chronic ischemic renal injury, and support development of senolytic therapy to reduce senescent cell burden and delay renal injury.
DOI: 10.6084/m9.figshare.19561582.v1
title: Graduate school admission data

description: Admission into graduate school data. This dataset has a binary response (outcome, dependent) variable called admit. There are three predictor variables: gre, gpa and rank.
DOI: 10.6084/m9.figshare.27332796.v1
title: Supplementary Table

description: Long-read sequencing has emerged as a powerful tool for uncovering novel transcripts and genes. However, existing protocols often lack confidence in identifying the transcription start site (TSS) and fail to capture non-poly(A) RNA, thereby limiting the discovery of novel genes, particularly long non-coding RNAs (lncRNAs). In this study, we introduce Cap-trap full-length cDNA sequencing (CFC-seq), a comprehensive protocol that combines Cap-trapping and poly(A)-tailing with Oxford Nanopore sequencing. This protocol enables precise identification of TSSs and full-length transcripts. Applying CFC-seq to two <i>in vitro</i> differentiation time courses resulted in approximately 236 million mappable reads. The transcript Start-site Aware Long-read Assembler (SALA) was developed for <i>de novo</i> assembling the transcript models, leading to the identification of 39,425 confident novel genes. Using this dataset, enhancer-derived ncRNAs were re-defined with longer length and more splicing activity, which were correlated with enhancer structure. Compared to enhancers with CpG islands, TATA box enhancers were shown to be more cell type specific with fewer chromatin interaction but produced longer and more stable polyadenylated RNA. A significant proportion of these TATA box-derived eRNAs originated from LTR transposable elements. Overall, this study systematically annotated ~24,000 novel eRNA genes and correlated their transcription properties with enhancer structure.
DOI: 10.17632/c4z4n2cdf7
title: ARC 3.0: An expanded Python toolbox for atomic physics calculations

description: ARC 3.0 is a modular, object-oriented Python library combining data and algorithms to enable the calculation of a range of properties of alkali and divalent atoms. Building on the initial version of the ARC library (Šibalić et al., 2017), which focused on Rydberg states of alkali atoms, this major upgrade introduces support for divalent atoms. It also adds new methods for working with atom–surface interactions, for modelling ultracold atoms in optical lattices and for calculating valence electron wave functions and dynamic polarisabilities. Such calculations have applications in a variety of fields, e.g., in the quantum simulation of many-body physics, in atom-based sensing of DC and AC fields (including in microwave and THz metrology) and in the development of quantum gate protocols. ARC 3.0 comes with an extensive documentation including numerous examples. Its modular structure facilitates its application to a wide range of problems in atom-based quantum technologies.
DOI: 10.25957/5d5b5751749aa
title: SEAWAT input files - tidal propagation circular aquifer
DOI: 10.6084/m9.figshare.23674254.v1
title: Source data for main text and supplementary information

description: The therapeutic efficacy of whole tumor cell vaccines (TCV) is modest, which has delayed their translation into personalized immunotherapies in the clinic. Here, we develop an innovative and highly potent TCV platform based on photothermal nanoparticle-loaded tumor cell, which can be rationally applied to diverse tumor types to achieve on-demand boost of anti-tumor immune responses for effectively suppressing tumor growth. During the fabrication process, mild photothermal heating by near-infrared (NIR) laser irradiation induces the nanoparticle-bearing tumor cells to express heat shock proteins as endogenous adjuvants. After a single vaccination at the back of tumor-bearing mice, non-invasive NIR laser irradiation further induces mild hyperthermia at vaccination site, which promotes the recruitment, activation, and presentation of dendritic cells. Notably, using a new indicator we termed fluctuation of tumor growth rate, we rationally determine appropriate irradiation regimens (including optimized irradiation intervals and times). This innovative TCV platform enables on-demand NIR manipulation of immune responses, and we systematically demonstrate potent therapeutic efficacy against six murine models that mimicked a range of clinical requirements, notably including a sophisticated model based on humanized mice and patient-derived tumor xenografts.
DOI: 10.6084/m9.figshare.3549858.v1
title: Appendix B. Calculation of fertility.

description: Calculation of fertility.
DOI: 10.17632/dvnntk22h6
title: Cars Dataset (Positive and Negative)

description: The dataset is organized into 2 folders (positive and negative) which contains total 2,800 images. The data is split into 1,230 positive images (car images) and 1,570 negative images (background images). The dataset is arranged in such a way that HAAR Cascade Classifier training can be done with it. This structure is described in OpenCV docs (https://docs.opencv.org/3.4/dc/d88/tutorial_traincascade.html). Positive Directory structure: 'img' folder witch contains all positive images and 'info.dat' file which contains all positive image descriptions. The first element of the line is the filename, followed by the number of object annotations, followed by numbers describing the coordinates of the objects bounding rectangles (x, y, width, height). /img img1.jpg img2.jpg . . . . info.dat Inside the file info.dat: img/img1.jpg 1 140 100 45 45 img/img2.jpg 2 100 200 50 50 50 30 25 25 Negative Directory structure: 'img' folder witch contains all negative images and 'bg.txt' file witch contains all negative image directory list. /img -img1.jpg -img2.jpg . . . . bg.txt Inside the file bg.txt: img/img1.jpg img/img2.jpg . . . .
DOI: 10.17632/zghtg5kyvv
title: Hrank

description: The average SiteGround uptime and response time for 313,920 websites and 3,761 Shared Servers.
DOI: 10.6084/m9.figshare.25569192.v1
title: Sup. Data D2.xlsx

description: Comparison between up- and down-regulated genes within datasets, Fg: F. Graminearum, Um: U maydis, Fv: F. Verticillioides, Ta: T. atroviride, UFgCa: Up-regulated with control A, UFgCb: Up-regulated with control B; DFgCa-Down-regulated with control A, DFgCb -Down-regulated with control B;
DOI: 10.6084/m9.figshare.28955354.v1
title: Date of Carbon Monoxide Cycling in the Marginal Sea.xlsx

description: Date for Carbon Monoxide Cycling in the Marginal Sea
DOI: 10.17632/xyd427tt4g
title: Leishmania major (Friedlin) complete transcripts

description: This dataset contains 808 sequences of transcripts considered complete molecules. These transcripts were generated and sequenced according to the procedure: Iso-Seq™ Template preparation for Sequel® Systems (PacBio). The RNA samples were derived from logarithmic phase promastigotes of the Friedlin strain of Leishmania major. The transcripts represent complete sequences because they had at their 5’-end at least 8 nucleotides derived from the 3’ end of the spliced-leader (SL) sequence, and a poly-A at their 3’-end. These sequence elements were trimmed out.