cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yzssw2
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Vampyrum spectrum (Linnaeus, 1758)"
 ]
}

 The dataset includes 246 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040345-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3931579_d13
title: Additional file 21: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies

description: CBA_J_EPIC. (XLS 1808 kb)
DOI: 10.6084/m9.figshare.c.3931579_d14
title: Additional file 22: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies

description: DBA_2J_EPIC. (XLS 1811 kb)
DOI: 10.6084/m9.figshare.c.3931579_d15.v1
title: Additional file 23: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies

description: FVB_NJ_EPIC. (XLS 1799 kb)
DOI: 10.15468/dl.gbhdsq
title: Occurrence Download

description: A dataset containing 12955 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucinostomus argenteus Baird & Girard, 1855",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 12955 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040346-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3931579_d15
title: Additional file 23: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies

description: FVB_NJ_EPIC. (XLS 1799 kb)
DOI: 10.6084/m9.figshare.c.3931579_d16.v1
title: Additional file 24: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies

description: LP_J_EPIC. (XLS 1810 kb)
DOI: 10.15468/dl.2thw64
title: Occurrence Download

description: A dataset containing 2364 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Trachops cirrhosus (Spix, 1823)"
 ]
}

 The dataset includes 2364 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040347-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3931579_d16
title: Additional file 24: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies

description: LP_J_EPIC. (XLS 1810 kb)
DOI: 10.15468/dl.d7md76
title: Occurrence Download

description: A dataset containing 629 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Chrotopterus auritus (Peters, 1856)"
 ]
}

 The dataset includes 629 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040348-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3931732_d5.v1
title: Additional file 5: of xCell: digitally portraying the tissue cellular heterogeneity landscape

description: The 53 previously published cell type gene signatures. (XLSX 58 kb)
DOI: 10.15468/dl.sstqvx
title: Occurrence Download

description: A dataset containing 104582 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates clamitans (Latreille, 1801))"
 ]
}

 The dataset includes 104582 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040337-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3931732_d5
title: Additional file 5: of xCell: digitally portraying the tissue cellular heterogeneity landscape

description: The 53 previously published cell type gene signatures. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3931732_d6
title: Additional file 6: of xCell: digitally portraying the tissue cellular heterogeneity landscape

description: xCell scores of 9947 samples from TCGA and TARGET. (TSV 6996 kb)
DOI: 10.6084/m9.figshare.c.3931765_d2.v1
title: Additional file 2: Table S7. of MicroRNA profiling of dogs with transitional cell carcinoma of the bladder using blood and urine samples

description: Demographic and miRNA expression data. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3931732_d7
title: Additional file 7: of xCell: digitally portraying the tissue cellular heterogeneity landscape

description: The spillover matrix and calibrating coefficients. (XLSX 110 kb)
DOI: 10.6084/m9.figshare.c.3931765_d2
title: Additional file 2: Table S7. of MicroRNA profiling of dogs with transitional cell carcinoma of the bladder using blood and urine samples

description: Demographic and miRNA expression data. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3933019_d4
title: MOESM2 of The Gene Ontology of eukaryotic cilia and flagella

description: Additional file 2. Prokaryotic flagella-related cellular component and biological process terms in the Gene Ontology (GO). Full list of terms available in the Gene Ontology (GO) to describe cellular components and biological processes related to prokaryotic flagella and available as of January 2017. Terms are listed in 3 separate sections pertinent to cellular components, motility and general organization of the flagellum, respectively. GO ID, Gene Ontology term identifier; GO term name, Gene Ontology term descriptive label; Aspect, branch of the Gene Ontology (CC = cellular component, BP = biological process); Created/modified by cilia GO project, indicates if a term was created or modified as part of the work described in this article. All GO terms can be browsed via AmiGO ( http://amigo.geneontology.org/amigo ) or QuickGO ( http://www.ebi.ac.uk/QuickGO/ ), and the full ontology can be downloaded via http://geneontology.org/page/download-ontology .
DOI: 10.6084/m9.figshare.c.3933034_d1
title: MOESM1 of Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution

description: Additional file 1. All of the whole genome sequencing results.
DOI: 10.6084/m9.figshare.c.3933037_d1
title: Additional file 1: Table S1. of Development and evaluation of an interferon gamma assay for the diagnosis of tuberculosis in red deer experimentally infected with Mycobacterium bovis

description: Individual antibody levels (in ELISA percentage, E%) to bovine purified protein derivative (bPPD) in red deer immediately before and until 60 days post-inoculation of M. bovis. Sera with E% values greater than 100 were considered positive. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3933037_d2.v1
title: Additional file 2: Table S2. of Development and evaluation of an interferon gamma assay for the diagnosis of tuberculosis in red deer experimentally infected with Mycobacterium bovis

description: Individual optical densities at 450 nm reflecting IFNγ responses in plasma of M. bovis-infected red deer from heparinized blood stimulated with Pokeweed mitogen (PWM), negative control (phosphate-buffered saline, PBS), bovine and avian purified protein derivatives (PPD), p22, early secretory antigenic target-6 kDa and culture filtrate protein 10 (ESAT-6/CFP-10), Rv3615c and Rv3020c. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3933019_d5.v1
title: MOESM3 of The Gene Ontology of eukaryotic cilia and flagella

description: Additional file 3. Cilia-related cellular component and biological process terms in the Gene Ontology (GO). Full list of terms available in the Gene Ontology (GO) to describe cilia-related cellular components and biological processes as of January 2017, ordered alphabetically by term name. GO ID, Gene Ontology term identifier; GO term name, Gene Ontology term descriptive label; Created/modified by cilia GO project, indicates if a term was created or modified as part of the work described in this article. All GO terms can be browsed via AmiGO ( http://amigo.geneontology.org/amigo ) or QuickGO ( http://www.ebi.ac.uk/QuickGO/ ), and the full ontology can be downloaded via http://geneontology.org/page/download-ontology .
DOI: 10.6084/m9.figshare.c.3933037_d2
title: Additional file 2: Table S2. of Development and evaluation of an interferon gamma assay for the diagnosis of tuberculosis in red deer experimentally infected with Mycobacterium bovis

description: Individual optical densities at 450 nm reflecting IFNγ responses in plasma of M. bovis-infected red deer from heparinized blood stimulated with Pokeweed mitogen (PWM), negative control (phosphate-buffered saline, PBS), bovine and avian purified protein derivatives (PPD), p22, early secretory antigenic target-6 kDa and culture filtrate protein 10 (ESAT-6/CFP-10), Rv3615c and Rv3020c. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3933019_d5
title: MOESM3 of The Gene Ontology of eukaryotic cilia and flagella

description: Additional file 3. Cilia-related cellular component and biological process terms in the Gene Ontology (GO). Full list of terms available in the Gene Ontology (GO) to describe cilia-related cellular components and biological processes as of January 2017, ordered alphabetically by term name. GO ID, Gene Ontology term identifier; GO term name, Gene Ontology term descriptive label; Created/modified by cilia GO project, indicates if a term was created or modified as part of the work described in this article. All GO terms can be browsed via AmiGO ( http://amigo.geneontology.org/amigo ) or QuickGO ( http://www.ebi.ac.uk/QuickGO/ ), and the full ontology can be downloaded via http://geneontology.org/page/download-ontology .
DOI: 10.6084/m9.figshare.c.3933019_d6.v1
title: MOESM4 of The Gene Ontology of eukaryotic cilia and flagella

description: Additional file 4. Papers used to make annotations for human ciliary genes. Full list of papers with corresponding PubMed IDs that were used for annotations for human ciliary genes. The first 29 papers comprise the set initially selected for the annotation project. The last four were curated later and specifically targeted to fill in gaps in experimental annotations of certain orthology groups in order to be able to propagate highly specific dynein-related annotations to other sequences within those orthology groups.
DOI: 10.6084/m9.figshare.c.3933019_d6
title: MOESM4 of The Gene Ontology of eukaryotic cilia and flagella

description: Additional file 4. Papers used to make annotations for human ciliary genes. Full list of papers with corresponding PubMed IDs that were used for annotations for human ciliary genes. The first 29 papers comprise the set initially selected for the annotation project. The last four were curated later and specifically targeted to fill in gaps in experimental annotations of certain orthology groups in order to be able to propagate highly specific dynein-related annotations to other sequences within those orthology groups.
DOI: 10.6084/m9.figshare.c.3933019_d7.v1
title: MOESM5 of The Gene Ontology of eukaryotic cilia and flagella

description: Additional file 5. Human genes annotated. List of all human genes annotated during this project, ordered alphabetically by Gene Symbol, with UniProtKB ID and Gene Name information, and presence within the SYSCILIA Gold Standard (SCGS) set also included. The numbers of experimental annotations made by this work to either cilia subset terms or to other GO terms are indicated. The Comment field indicates which genes were targeted in the initial set of papers, which were targeted for supplemental annotations, and also which genes are candidates to add to the SCGS based on the experimental work annotated by this project.
DOI: 10.6084/m9.figshare.c.3933019_d7
title: MOESM5 of The Gene Ontology of eukaryotic cilia and flagella

description: Additional file 5. Human genes annotated. List of all human genes annotated during this project, ordered alphabetically by Gene Symbol, with UniProtKB ID and Gene Name information, and presence within the SYSCILIA Gold Standard (SCGS) set also included. The numbers of experimental annotations made by this work to either cilia subset terms or to other GO terms are indicated. The Comment field indicates which genes were targeted in the initial set of papers, which were targeted for supplemental annotations, and also which genes are candidates to add to the SCGS based on the experimental work annotated by this project.
DOI: 10.6084/m9.figshare.c.3933019_d8.v1
title: MOESM6 of The Gene Ontology of eukaryotic cilia and flagella

description: Additional file 6. Gene Association File for Human Annotations. File in GAF 2.0 format ( http://www.geneontology.org/page/go-annotation-file-format-20 ) containing all the human annotations made by this project. Annotations for the 33 publications listed in Additional file 3 were extracted by grepping for the relevant PMIDâ  s from the goa_human.gaf file generated on 3/13/2017 as downloaded from http://www.geneontology.org/page/download-annotations on 3/20/2017. A subsequent step to filter the annotations by source (column 15) to either SYSCILIA_CCNET or GO_Central generated this file of annotations generated for human genes for this project.
DOI: 10.6084/m9.figshare.c.3933019_d8
title: MOESM6 of The Gene Ontology of eukaryotic cilia and flagella

description: Additional file 6. Gene Association File for Human Annotations. File in GAF 2.0 format ( http://www.geneontology.org/page/go-annotation-file-format-20 ) containing all the human annotations made by this project. Annotations for the 33 publications listed in Additional file 3 were extracted by grepping for the relevant PMIDâ  s from the goa_human.gaf file generated on 3/13/2017 as downloaded from http://www.geneontology.org/page/download-annotations on 3/20/2017. A subsequent step to filter the annotations by source (column 15) to either SYSCILIA_CCNET or GO_Central generated this file of annotations generated for human genes for this project.
DOI: 10.6084/m9.figshare.c.3933019_d9.v1
title: MOESM7 of The Gene Ontology of eukaryotic cilia and flagella

description: Additional file 7. Papers used to make annotations for Chlamydomonas reinhardtii ciliary genes. Full list of papers with corresponding PubMed IDs that were used for annotations for Chlamydomonas reinhardtii ciliary genes.
DOI: 10.6084/m9.figshare.c.3933019_d11.v1
title: MOESM9 of The Gene Ontology of eukaryotic cilia and flagella

description: Additional file 9. Gene Association File for Chlamydomonas reinhardtii annotations. File in GAF 2.0 format ( http://www.geneontology.org/page/go-annotation-file-format-20 ) containing all the Chlamydomonas reinhardtii annotations made by this project. These annotations were extracted from the goa_uniprot_all_noiea.gaf file generated on 2/13/2017 as downloaded from http://www.geneontology.org/page/download-annotations on 3/17/2017. Note that subsequent to this being generated, all annotations for A8JDH8 were transferred to Q4AC22, a more complete sequence for DHC9 and all annotations for A8JDN3 were transferred to Q39604, the SwissProt reviewed entry for IDA4. Additionally, in response to our suggestion, A8JDN3 was merged into Q39604 as it was identical in sequence.
DOI: 10.6084/m9.figshare.c.3933019_d9
title: MOESM7 of The Gene Ontology of eukaryotic cilia and flagella

description: Additional file 7. Papers used to make annotations for Chlamydomonas reinhardtii ciliary genes. Full list of papers with corresponding PubMed IDs that were used for annotations for Chlamydomonas reinhardtii ciliary genes.
DOI: 10.6084/m9.figshare.c.3933958_d3
title: Additional file 3: of Genetic variation in populations of the earthworm, Lumbricus rubellus, across contaminated mine sites

description: Gene annotation data output by blastx as associated with SNPs considered to be most strongly under selection. Tab 1 lists annotations for 49 scaffolds containing SNPs differentiated between lineages A and B. Tab 2 lists annotations for 39 scaffolds containing SNPs differentiated between earthworms found on former mine sites and proximal control sites. (XML 80Â kb)
DOI: 10.6084/m9.figshare.c.3933958_d4
title: Additional file 4: of Genetic variation in populations of the earthworm, Lumbricus rubellus, across contaminated mine sites

description: Lineage B genome locations of all SNPs, including respective values output by Bayescan, PCAdapt and Fisherâ  s exact test when comparing populations for signals of selection. (ZIP 479Â kb)
DOI: 10.15468/dl.3pj5n6
title: Occurrence Download

description: A dataset containing 2624 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucinostomus gula (Quoy & Gaimard, 1824)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 2624 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040349-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3934171_d1.v1
title: MOESM1 of Insecticide resistance in Anopheles arabiensis from Ethiopia (2012â  2016): a nationwide study for insecticide resistance monitoring

description: Additional file 1: Tables S1. Summary of PMI-supported IRS activities in Ethiopia, 2008-2016. Table S2. Summary of insecticide resistance assays conducted per year in Ethiopia, 2012-2016. Table S3. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in WHO susceptibility tests conducted in Ethiopia, 2013. Table S4. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in WHO susceptibility tests conducted in Ethiopia, 2014. Table S5. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in WHO susceptibility tests conducted in Ethiopia, 2015. Table S6. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in WHO susceptibility tests conducted in Ethiopia, 2016. Table S7. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in CDC bottle bioassays conducted in Ethiopia, 2013. Table S8. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in CDC bottle bioassays conducted in Ethiopia, 2014. Table S9. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in CDC bottle bioassays conducted in Ethiopia, 2015. Table S10. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in CDC bottle bioassays conducted in Ethiopia, 2016. Table S11. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in WHO susceptibility tests and CDC bottle bioassays conducted in Ziway Dugda, Ethiopia, 2013-2016.
DOI: 10.6084/m9.figshare.c.3934171_d1
title: MOESM1 of Insecticide resistance in Anopheles arabiensis from Ethiopia (2012â  2016): a nationwide study for insecticide resistance monitoring

description: Additional file 1: Tables S1. Summary of PMI-supported IRS activities in Ethiopia, 2008-2016. Table S2. Summary of insecticide resistance assays conducted per year in Ethiopia, 2012-2016. Table S3. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in WHO susceptibility tests conducted in Ethiopia, 2013. Table S4. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in WHO susceptibility tests conducted in Ethiopia, 2014. Table S5. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in WHO susceptibility tests conducted in Ethiopia, 2015. Table S6. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in WHO susceptibility tests conducted in Ethiopia, 2016. Table S7. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in CDC bottle bioassays conducted in Ethiopia, 2013. Table S8. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in CDC bottle bioassays conducted in Ethiopia, 2014. Table S9. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in CDC bottle bioassays conducted in Ethiopia, 2015. Table S10. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in CDC bottle bioassays conducted in Ethiopia, 2016. Table S11. Percentage corrected mortality (and numbers tested) of Anopheles arabiensis in WHO susceptibility tests and CDC bottle bioassays conducted in Ziway Dugda, Ethiopia, 2013-2016.
DOI: 10.6084/m9.figshare.c.3935332_d2.v1
title: Additional file 2: Table S1. of Target proteins reprogrammed by As and Asâ  +â  Si treatments in Solanum lycopersicum L. fruit

description: MALDI-TOF/TOF data associated with differentially abundant fruit proteins identified in (A) cv. Aragon and (B) cv. Gladis. See attached excels file. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.c.3935332_d2
title: Additional file 2: Table S1. of Target proteins reprogrammed by As and Asâ  +â  Si treatments in Solanum lycopersicum L. fruit

description: MALDI-TOF/TOF data associated with differentially abundant fruit proteins identified in (A) cv. Aragon and (B) cv. Gladis. See attached excels file. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.c.3935338_d15
title: Additional file 9: of Metabolic adaptation of two in silico mutants of Mycobacterium tuberculosis during infection

description: Flux values and shadow prices for all the explored conditions of the icl-mutant and Wildt-type strains. Shadow prices were obtained by dual solution of the FBA while fluxes were obtained by minimization of enzyme usage. (XLSX 362 kb)
DOI: 10.6084/m9.figshare.c.3935473_d1
title: Additional file 1: of The impact of signal-to-noise ratio, diffusion-weighted directions and image resolution in cardiac diffusion tensor imaging – insights from the ex-vivo rat heart

description: This spreadsheet contains look-up tables for Figs. 4 and 5. (XLSX 67 kb)
DOI: 10.6084/m9.figshare.c.3935515_d3.v1
title: MOESM3 of Whole genome sequencing-based detection of antimicrobial resistance and virulence in non-typhoidal Salmonella enterica isolated from wildlife

description: Additional file 3: Table S3. Mapping of virulence genes present in 103 wildlife salmonella isolates. Salmonella genome assemblies were searched against a local copy of the Virulence Factor Database using BLAST. Minimum identity of 90% and minimum length of 50% BLAST hits were used as cut off value. Reference column indicates the NCBI gene locus tag of the reference genes used. Values in the sample columns indicate the BLAST sequence percentage identity cutoff values.
DOI: 10.6084/m9.figshare.c.3936748_d1.v1
title: Additional file 1: of Humoral response in experimental autoimmune encephalomyelitis targets neural precursor cells in the central nervous system of naive rodents

description: Methods. Experimental groups, EAE induction and evaluation, Cell culture protocol, Preparation of samples for SDS-PAGE. (RTF 3.45Â kb)
DOI: 10.6084/m9.figshare.c.3936721_d3
title: MOESM3 of Differences in the gut microbiota of dogs (Canis lupus familiaris) fed a natural diet or a commercial feed revealed by the Illumina MiSeq platform

description: Additional file 3. The raw data of PCO vectors for all samples.
DOI: 10.6084/m9.figshare.c.3936748_d1
title: Additional file 1: of Humoral response in experimental autoimmune encephalomyelitis targets neural precursor cells in the central nervous system of naive rodents

description: Methods. Experimental groups, EAE induction and evaluation, Cell culture protocol, Preparation of samples for SDS-PAGE. (RTF 3.45Â kb)