cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/0vv-eyz-f98
title: Senecio sarracenicus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/43c-bd9-9tw
title: Pilosella lactucella subsp. lactucella

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/2t8-1t6-cwq
title: Schoenoplectiella mucronata (L.) J.Jung & H.K.Choi

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xjf-slx-p9c
title: Arnica montana L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/3ch-85d-sy7
title: Amaranthus deflexus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/fyb-4hf-bd5
title: Centranthus calcitrapae (L.) Dufr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lk7-vcv-lkg
title: Eleocharis ovata (Roth) Roem. & Schult.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/d9r-cgh-wtp
title: Erigeron sumatrensis Retz.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zra-hjc-02l
title: Ranunculus sardous Crantz

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/f42-rp3-fra
title: Carex brachystachys Schrank

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/sxp-7j5-p3x
title: Centaurium Hill

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/l4l-mlw-zq6
title: Brassicaceae Burnett

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/m22-gjh-031
title: Crepis pulchra L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/20f-x8z-dvv
title: Prasium majus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xkj-el2-9jn
title: Setaria P.Beauv.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/eaf-qj6-efl
title: Carex distans L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.yuybcr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pennisetum clandestinum",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064283-250717081556266/datasets/export for details.
DOI: 10.3535/5w8-k1d-59y
title: Brassicaceae Burnett

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/p2l-tpk-ch8
title: Equisetum telmateia Ehrh.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9ea-aaw-cgt
title: Geranium palustre L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jhl-wq7-zkv
title: Aster alpinus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/y30-6y7-2hg
title: Salix waldsteiniana Willd.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/3p8-gmz-gpt
title: Centaurea nigrescens Willd.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/af8-3k6-kmc
title: Rubus laciniatus Willd.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zvd-q2c-6yf
title: Linum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ynv-gxw-l36
title: Tephroseris longifolia subsp. longifolia

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hw3-vxe-c0k
title: Oreoselinum nigrum Delarbre

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xsn-xje-sfr
title: Carex serotina Mérat

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/cj1-pf0-nl1
title: Prasium majus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/mlr-bjr-3y5
title: Trifolium aureum Pollich

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jng-scj-0cr
title: Guettarda L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xz3-ke5-65z
title: Chorispora tenella (Pall.) DC.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/d64-06j-kdw
title: Arabis verna (L.) W. T. Aiton

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5xf-fn1-efr
title: Pancratium Dill. ex L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/96d-0qh-twf
title: Chomelia obtusa Cham. & Schltdl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/aen-q22-jw1
title: Reichardia picroides (L.) Roth

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/mww-gjy-rhk
title: Juncus tenageia Ehrh. ex L. fil.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/09g-qa0-zht
title: Sagina nodosa (L.) Fenzl

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ne6-cbz-avd
title: Epilobium palustre L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.jfgund
title: Occurrence Download

description: A dataset containing 24803 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phyllergates cuculatus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 24803 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064281-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/09r-1v4-wqf
title: Myosotis ucrainica Czern.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/e2t-ltp-jsa
title: Parentucellia latifolia (L.) Caruel

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/90b-tk2-mzd
title: Trifolium subterraneum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/f2c-k50-0rd
title: Carex parviflora Host

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/fwv-vlz-19y
title: Moutabea excoriata Mart. ex Miq.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/12b-vjp-pkk
title: Allium L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/nb2-nt9-gyx
title: Pilosella aurantiaca subsp. aurantiaca

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/h2a-kj2-6vq
title: Romulea Maratti

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/k27-ga8-5ex
title: Ranunculus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rz3-f25-847
title: Anthemis L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.7zd3zm
title: Occurrence Download

description: A dataset containing 785 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Korea, Republic of",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lamium album barbatum"
 ]
}

 The dataset includes 785 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064282-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/5n9-sfk-j6d
title: Capsella bursa-pastoris (L.) Medik.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9yt-p7a-765
title: Ranunculus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/tht-pe0-q45
title: Carex pilosa Scop.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wq8-e6r-37d
title: Cerastium brachypetalum Desp. ex Pers.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/psv-wk2-x55
title: Cruciata glabra (L.) Opiz

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/1em-15r-ljm
title: Carex curvata Knaf

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/j60-8cx-cep
title: Potentilla pusilla Host

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9ah-ck3-ffz
title: Chenopodium striatiforme Murr

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ahl-chb-smg
title: Spergularia marina (L.) Besser

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/053-a4s-pmt
title: Allium paradoxum (M.Bieb.) G.Don

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dw9-9p1-1w9
title: Epilobium obscurum Schreb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/trp-n3l-m90
title: Qualea grandiflora Mart.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xya-m9d-ffp
title: Viburnum rhytidophyllum Hemsl. ex Forbes & Hemsl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/exh-3a9-nz2
title: Didymopanax macrocarpus (Cham. & Schltdl.) Seem.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/we4-qwa-ya3
title: Didymopanax macrocarpus (Cham. & Schltdl.) Seem.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/epa-psd-dk5
title: Carex melanostachya M.Bieb. ex Willd.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/mtc-3l7-4xb
title: Galium saxatile L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/s8n-tx7-zgr
title: Anemia ferruginea Kunth

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/av6-adq-g8e
title: Manihot Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bsn-kgk-824
title: Pilosella lactucella subsp. lactucella

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jma-7sn-a5t
title: Galianthe Griseb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ccx-4f9-gym
title: Luzula sylvatica (Huds.) Gaudin

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wvr-vfh-xwk
title: Sapium glandulosum (L.) Morong

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.rxjy59
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cobitis tanaitica)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 34 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064284-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/l6m-2eb-260
title: Filago L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ray-8yp-708
title: Virola sebifera Aubl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/akc-yhf-37d
title: Sisymbrium irio L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0dx-7pb-f11
title: Rumex alpinus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/y4a-ftt-j05
title: Rumex alpinus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/50p-1mr-t4e
title: Echinochloa colonum subsp. edulis (Honda) Banfi & Galasso

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/x4s-zgy-4wk
title: Dysphania botrys (L.) Mosyakin & Clemants

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9vg-6lc-9an
title: Carex mucronata All.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pa6-bzd-r9d
title: Rorippa palustris (L.) Besser

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/d5d-8mc-4vv
title: Lycopodium clavatum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pbv-pja-q4f
title: Centranthus ruber (L.) DC.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.fhjfd4
title: Occurrence Download

description: A dataset containing 774635 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miconia"
 ]
}

 The dataset includes 774635 records from 1214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064251-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.em352t
title: Occurrence Download

description: A dataset containing 463 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong, Macao)",
 "TaxonKey is Cremastra appendiculata"
 ]
}

 The dataset includes 463 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012591-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14830531
title: NanoBEP – A Machine Learning Based Tool for Nanobody Binding Energy Prediction (Dataset)

description: This repository contains codes, data for machine learning models developed to predict the binding affinity of various protein complexes. The repository explores the interactions of Antigen-Antibody (Ag-Ab), Protein-Protein (P-P), and Nanobody-Protein (Nb-P) complexes through different experimental setups and modeling approaches.

Repository Structure

Codes:

Contains the codes used to build the models for Set A, Set B, Set C using Random forest and the codes for support vector regression analysis.

Data:

Contains the dataset for training and testing the models.

Feature Generation:

Contains the codes and data to generate AAPP features, PPDX features and SASA, Prodigy features.

Graphical_elimination:

Contains scripts and data for removing redundant features using network analysis.

Requirements

• Python: 3.8+

• Libraries:

     o   scikit-learn

     o   numpy

     o   pandas

     o   matplotlib

     o   scipy

     o   joblib

Usage

Run the Jupyter Notebook scripts located in the respective folders to train and test the models.

Tutorial folder contains the necessary files to perform the prediction using the Set C3 (best performing model) abd the "READ ME" file contains the instruction.
DOI: 10.5281/zenodo.14830532
title: NanoBEP – A Machine Learning Based Tool for Nanobody Binding Energy Prediction (Dataset)

description: This repository contains codes, data for machine learning models developed to predict the binding affinity of various protein complexes. The repository explores the interactions of Antigen-Antibody (Ag-Ab), Protein-Protein (P-P), and Nanobody-Protein (Nb-P) complexes through different experimental setups and modeling approaches.

Repository Structure

Codes:

Contains the codes used to build the models for Set A, Set B, Set C using Random forest and the codes for support vector regression analysis.

Data:

Contains the dataset for training and testing the models.

Feature Generation:

Contains the codes and data to generate AAPP features, PPDX features and SASA, Prodigy features.

Graphical_elimination:

Contains scripts and data for removing redundant features using network analysis.

Requirements

• Python: 3.8+

• Libraries:

     o   scikit-learn

     o   numpy

     o   pandas

     o   matplotlib

     o   scipy

     o   joblib

Usage

Run the Jupyter Notebook scripts located in the respective folders to train and test the models.
DOI: 10.15468/dl.9rtyyb
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coffea liberica var. liberica)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093443-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12535176
title: Curated monomers for Virtual Forward Synthesis (VFS)

description: This data set (named "monomers.pkl") of molecules was used to generate the hypothetical polymers stored in https://github.com/Ramprasad-Group/polyverse-structures. This data set is derived from the union of the ZINC15 and ChEMBL databases. The data set was created using the following rules: (1) select the molecules that are readily purchasable (2) select the molecules that have standard reactivity (3) strip counterions and chirality (4) Use the SAscore to remove complex molecules.

The data set contains 7,754,881 entries. It contains two columns: "index" and "id-smiles". Each entry in "index" is an integer, starting from 0. Each entry in "id-smiles" is a tuple. The first element of the tuple is an ID (either the ZINC15 ID or the ChEMBL ID). The second element of the tuple is the processed SMILES string.
DOI: 10.5281/zenodo.12535177
title: Curated monomers for Virtual Forward Synthesis (VFS)

description: This data set (named "monomers.pkl") of molecules was used to generate the hypothetical polymers stored in https://github.com/Ramprasad-Group/polyverse-structures. This data set is derived from the union of the ZINC15 and ChEMBL databases. The data set was created using the following rules: (1) select the molecules that are readily purchasable (2) select the molecules that have standard reactivity (3) strip counterions and chirality (4) Use the SAscore to remove complex molecules.

The data set contains 7,754,881 entries. It contains two columns: "index" and "id-smiles". Each entry in "index" is an integer, starting from 0. Each entry in "id-smiles" is a tuple. The first element of the tuple is an ID (either the ZINC15 ID or the ChEMBL ID). The second element of the tuple is the processed SMILES string.
DOI: 10.15468/dl.casunr
title: Occurrence Download

description: A dataset containing 40738 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex bigelowii Torr. ex Schwein."
 ]
}

 The dataset includes 40738 records from 281 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093444-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5frpk
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oldenlandia capensis var. capensis)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093446-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5s2kd
title: Occurrence Download

description: A dataset containing 662 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ruscus hypoglossum L.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 662 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093447-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zuh8xm
title: Occurrence Download

description: A dataset containing 395 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Macroalgae from eight reefs in the Campeche Bank, collected by the National Autonomous University of Mexico (UNAM)"
 ]
}

 The dataset includes 395 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093449-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8reurf
title: Occurrence Download

description: A dataset containing 12110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Galium spurium subsp. spurium)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12110 records from 228 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093450-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkhxxy
title: Occurrence Download

description: A dataset containing 4343 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Furcraea foetida (L.) Haw.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4343 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093451-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5063/f13f4n3k
title: Kruger National Park South Africa (2015 and 2022)

description: This dataset used camera trap data collected from the Kruger National Park (KNP) in 2015 (June and July) and 2022 (June) to describe waterhole visitation patterns by large mammals using a Model Bushnell Aggressor Trophy Cam HD Low-Glow cameras. Cameras were set to record photographs at five-minute intervals and when motion was detected with a minimum one-minute interval between photographs and each photograph was manually annotated to record the abundance of species in direct contact with or next to the waterhole. These data provide us with a temporal record of species at waterholes, including patterns of spatial and temporal co-occurrence.