cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c59501
title: MassIVE MSV000086842 - The B Cell Repertoire in Multiple Sclerosis Reveals Molecular Mimicry between EBNA1 and GlialCAM
title: This data set contains the mass spectrometry raw files for the paper The B Cell Repertoire in Multiple Sclerosis Reveals Molecular Mimicry between EBNA1 and GlialCAM. In multiple sclerosis (MS) intrathecal B lymphocytes are directly involved in inflammation and secrete oligoclonal immunoglobulin. However, our understanding of their phenotype, function, and antigen-specificity in MS is incomplete. Molecular mimicry to viruses and self-antigens could be a trigger of autoimmunity. Here we describe phenotypic differences of B cells in blood and cerebro-spinal fluid (CSF) and predominantly implicate plasmablasts in MS pathogenesis. Single-cell paired-chain antibody repertoire sequencing in blood and CSF suggests ongoing intrathecal somatic hypermutation and antigen-specific clonal expansion of intrathecal plasmablasts. The presence of these antibodies was verified using mass spectrometry sequencing of the IgGs isolated from CSF. Selected CSF-derived antibodies were tested against a spectrum of viruses implicated in MS pathogenesis. Antibody MS39p2w174 binds Epstein-Barr Virus (EBV) transcription factor EBNA1 and cross-reacts to the glial cellular adhesion molecule GlialCAM, which is facilitated by serine-phosphorylation. EBNA1 peptide immunization aggravates the mouse model of MS. EBNA1-GlialCAM cross-reactive antibodies are more prevalent in MS patients than in healthy controls. Together, our results suggest that anti-EBNA1- antibodies cross-react with GlialCAM and contribute to MS pathology. This dataset contains the RAW files for the CSF isolated IgGs.
DOI: 10.7277/mtq2-kc69
title: Full-Scale Seismically Isolated Bridge Testing (NEES-2010-0976)

description: &lt;p&gt;&lt;strong&gt;Title:&lt;/strong&gt; Full-Scale Seismically Isolated Bridge Testing (NEES-2010-0976)&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Year Of Curation: &lt;/strong&gt;2013&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Description: &lt;/strong&gt;The analysis and design of seismically isolated structures are based on bounding procedures that accounts for plausible changes in mechanical properties of isolation hardware (elastomeric, lead-rubber or sliding bearings) due to natural occurring phenomena during the lifetime of the structure. This research focuses on the performance of seismic isolation technology over time and over a wide spectrum of temperatures and other environmental conditions, and it is based on the experimental study of a full-scale seismically isolated bridge.&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Award: &lt;/strong&gt;N/A&lt;/p&gt; &lt;p&gt;&lt;strong&gt;PIs &amp; CoPIs: &lt;/strong&gt;Andrew Whittaker&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Dates: &lt;/strong&gt;November 2, 2010 to June 12, 2014&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Organizations: &lt;/strong&gt;State University of New York at Buffalo, NY, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Facilities: &lt;/strong&gt;State University of New York at Buffalo, NY, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Sponsor: &lt;/strong&gt;MCEER Center, State of New York&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Keywords: &lt;/strong&gt;free vibration response, bridge structure&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Publications: &lt;/strong&gt;--&lt;/p&gt; &lt;nb:citations&gt;&lt;/nb:citations&gt;
DOI: 10.5519/qd.hh005dbp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (710 records)
DOI: 10.5066/p9tn8ec4
title: Selected borehole geophysical logs from three contaminant sites in California, Wisconsin, and New Jersey

description: Borehole geophysical logs were collected to characterize bedrock aquifers at three contamination sites located in California, Wisconsin, and New Jersey. The data were collected by the U.S. Geological Survey (USGS) and the University of Guelph from 2014 to 2015 as part of the U.S. Department of Defense Strategic Environmental Research and Development Program (SERDP) and Environmental Security Technology Certification Program (ESTCP) initiatives to apply geophysical methods at fractured-rock sites contaminated with chlorinated solvents. Logs were collected in open boreholes completed in fractured rock. Each borehole was logged with natural gamma, electromagnetic induction, normal resistivity, single-point resistance, spontaneous potential, induced polarization, magnetic susceptibility, acoustic imaging, and nuclear magnetic resonance methods. In addition, total volatile organic compound (TVOC) samples were extracted from solid core and collected at discrete locations that averaged every 0.5 to 1.0 foot along depth of the borehole. The borehole geophysical data are summarized for each of the sites. These data were used in a machine learning exercise that explored the relations between borehole log measurements and contaminant distribution.
DOI: 10.6084/m9.figshare.11522520.v2
title: NIAB Wheat pedigree. Helium input files (updated 06.01.20)

description: Input files for use with Helium crop pedigree visualisation software (https://github.com/cardinalb/helium-docs/wiki/Download-Helium). This dataset is an updated and edited version of the original pedigree published in (https://doi.org/10.1371/journal.pbio.3000071) and contains wheat varieties up to the AHDB recommended list 2020/2021.
DOI: 10.6084/m9.figshare.11522520.v4
title: NIAB Wheat pedigree. Helium input files (updated 06.01.20)

description: Input files for use with Helium crop pedigree visualisation software (https://github.com/cardinalb/helium-docs/wiki/Download-Helium). This dataset is an updated and edited version of the original pedigree published in (https://doi.org/10.1371/journal.pbio.3000071) and contains wheat varieties up to the AHDB recommended list 2020/2021.
DOI: 10.6084/m9.figshare.11522520.v3
title: NIAB Wheat pedigree. Helium input files (updated 06.01.20)

description: Input files for use with Helium crop pedigree visualisation software (https://github.com/cardinalb/helium-docs/wiki/Download-Helium). This dataset is an updated and edited version of the original pedigree published in (https://doi.org/10.1371/journal.pbio.3000071) and contains wheat varieties up to the AHDB recommended list 2020/2021.
DOI: 10.6084/m9.figshare.11522520
title: NIAB Wheat pedigree. Helium input files (updated 06.01.20)

description: Input files for use with Helium crop pedigree visualisation software (https://github.com/cardinalb/helium-docs/wiki/Download-Helium). This dataset is an updated and edited version of the original pedigree published in (https://doi.org/10.1371/journal.pbio.3000071) and contains wheat varieties up to the AHDB recommended list 2020/2021.
DOI: 10.23641/asha.13641284
title: Child and adult word segmentation (Katz & Moore, 2021)

description: <b>Purpose: </b>The aim of the study was to investigate the effects of specific acoustic patterns on word learning and segmentation in 8- to 11-year-old children and in college students.<b>Method: </b>Twenty-two children (ages 8;2–11;4 [years;months]) and 36 college students listened to synthesized “utterances” in artificial languages consisting of six iterated “words,” which followed either a phonetically natural lenition–fortition pattern or an unnatural (cross-linguistically unattested) antilenition pattern. A two-alternative forced-choice task tested whether they could discriminate between occurring and nonoccurring sequences. Participants were exposed to both languages, counterbalanced for order across subjects, in sessions spaced at least 1 month apart.<b>Results: </b>Children showed little evidence for learning in either the phonetically natural or unnatural condition nor evidence of differences in learning across the two conditions. Adults showed the predicted (and previously attested) interaction between learning and phonetic condition: The phonetically natural language was learned better. The adults also showed a strong effect of session: Subjects performed much worse during the second session than the first.<b>Conclusions: </b>School-age children not only failed to demonstrate the phonetic asymmetry demonstrated by adults in previous studies but also failed to show strong evidence for any learning at all. The fact that the phonetic asymmetry (and general learning effect) was replicated with adults suggests that the child result is not due to inadequate stimuli or procedures. The strong carryover effect for adults also suggests that they retain knowledge about the sound patterns of an artificial language for over a month, longer than has been reported in laboratory studies of purely phonetic/phonological learning.<br><b>Supplemental Material S1. </b>Data by subject, children. <br><b>Supplemental Material S2. </b>Data by subject, adults.<br><b>Supplemental Material S3.</b> Data by trial, adults.<br><b>Supplemental Material S4. </b>Data by trial, children.<br><b>Supplemental Material S5. </b>Description of data files.<br><b>Supplemental Material S6.</b> Description of sound files. <br> <b>Supplemental Material S7. </b>Sound files for targets and foils. <br>Katz, J., & Moore, M. W. (2021). Phonetic effects in child and adult word segmentation. Journal of Speech, Language, and Hearing Research. Advance online publication. https://doi.org/10.1044/2020_JSLHR-19-00275
DOI: 10.23641/asha.13641284.v1
title: Child and adult word segmentation (Katz & Moore, 2021)

description: <b>Purpose: </b>The aim of the study was to investigate the effects of specific acoustic patterns on word learning and segmentation in 8- to 11-year-old children and in college students.<b>Method: </b>Twenty-two children (ages 8;2–11;4 [years;months]) and 36 college students listened to synthesized “utterances” in artificial languages consisting of six iterated “words,” which followed either a phonetically natural lenition–fortition pattern or an unnatural (cross-linguistically unattested) antilenition pattern. A two-alternative forced-choice task tested whether they could discriminate between occurring and nonoccurring sequences. Participants were exposed to both languages, counterbalanced for order across subjects, in sessions spaced at least 1 month apart.<b>Results: </b>Children showed little evidence for learning in either the phonetically natural or unnatural condition nor evidence of differences in learning across the two conditions. Adults showed the predicted (and previously attested) interaction between learning and phonetic condition: The phonetically natural language was learned better. The adults also showed a strong effect of session: Subjects performed much worse during the second session than the first.<b>Conclusions: </b>School-age children not only failed to demonstrate the phonetic asymmetry demonstrated by adults in previous studies but also failed to show strong evidence for any learning at all. The fact that the phonetic asymmetry (and general learning effect) was replicated with adults suggests that the child result is not due to inadequate stimuli or procedures. The strong carryover effect for adults also suggests that they retain knowledge about the sound patterns of an artificial language for over a month, longer than has been reported in laboratory studies of purely phonetic/phonological learning.<br><b>Supplemental Material S1. </b>Data by subject, children. <br><b>Supplemental Material S2. </b>Data by subject, adults.<br><b>Supplemental Material S3.</b> Data by trial, adults.<br><b>Supplemental Material S4. </b>Data by trial, children.<br><b>Supplemental Material S5. </b>Description of data files.<br><b>Supplemental Material S6.</b> Description of sound files. <br> <b>Supplemental Material S7. </b>Sound files for targets and foils. <br>Katz, J., & Moore, M. W. (2021). Phonetic effects in child and adult word segmentation. Journal of Speech, Language, and Hearing Research. Advance online publication. https://doi.org/10.1044/2020_JSLHR-19-00275
DOI: 10.6084/m9.figshare.13915820
title: Putative Metabolite Annotations

description: This data set contains putative annotated metabolites as well as annotations of metabolites identified with mzCloud for the study entitled 'Species-specific variations in the metabolomic profiles of <i>Acropora hyachintus</i> and <i>Acropora millepora</i> mask acute temperature stress effects in adult coral colonies'.
DOI: 10.6084/m9.figshare.13915820.v1
title: Putative Metabolite Annotations

description: This data set contains putative annotated metabolites as well as annotations of metabolites identified with mzCloud for the study entitled 'Species-specific variations in the metabolomic profiles of <i>Acropora hyachintus</i> and <i>Acropora millepora</i> mask acute temperature stress effects in adult coral colonies'.
DOI: 10.15468/uq974f
title: Redescription of Promecostethus unifalculatus, the only known harvestman from Crozet Islands (Opiliones: Triaenonychidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Porto, Willians, Pérez-González, Abel (2020): Redescription of Promecostethus unifalculatus, the only known harvestman from Crozet Islands (Opiliones: Triaenonychidae). Zootaxa 4861 (1): 120-130, DOI: https://doi.org/10.11646/zootaxa.4861.1.8
DOI: 10.15468/k7fwxa
title: A new species of Sternitta Fibiger, 2011 (Lepidoptera, Erebidae, Hypenodinae Micronoctuini) from Cambodia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Qi, Mujie, Bae, Yangseop, Han, Huilin (2020): A new species of Sternitta Fibiger, 2011 (Lepidoptera, Erebidae, Hypenodinae Micronoctuini) from Cambodia. Zootaxa 4859 (4): 596-600, DOI: https://doi.org/10.11646/zootaxa.4859.4.7
DOI: 10.15468/spa7nm
title: The description of the tiger beetle larvae of Cosmodela aurulenta (Fabricius 1801) (Coleoptera, Cicindelidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Putchkov, Alexander V., Markina, Tetiana Yu. (2020): The description of the tiger beetle larvae of Cosmodela aurulenta (Fabricius 1801) (Coleoptera, Cicindelidae). Zootaxa 4859 (4): 537-544, DOI: https://doi.org/10.11646/zootaxa.4859.4.5
DOI: 10.12751/g-node.0blveb
title: CMOS-MEA recordings of mouse retinal ganglion cells upon smooth electrical stimulation

description: This repository contains data obtained from multi-electrode array recordings of mouse retinal ganglion cells upon smooth electrical stimulation. Both the raw and the preprocessed (spike-sorted) files are available in the respective folders (raw, sorted). You can open and browse the data files using the CMOS-MEA-Tools Software (https://www.multichannelsystems.com/software/cmos-mea-tools, version 2.1.0). This data is described and analysed in the paper Höfling, L., Oesterle, J., Berens, P., & Zeck, G. (2020). Probing and predicting ganglion cell responses to smooth electrical stimulation in healthy and blind mouse retina. Scientific Reports, 10(1), 5248. https://doi.org/10.1038/s41598-020-61899-y
description: IsSupplementTo: Höfling, L., Oesterle, J., Berens, P., & Zeck, G. (2020). Probing and predicting ganglion cell responses to smooth electrical stimulation in healthy and blind mouse retina. Scientific Reports, 10(1), 5248. https://doi.org/10.1038/s41598-020-61899-y. (https://doi.org/10.1038/s41598-020-61899-y)
DOI: 10.6084/m9.figshare.13917443
title: SQOL18 and JEFFERSON.sav

description: <pre>Database for the validation of the SQoL-18 quality of life questionnaire in patients with severe mental illness</pre>
DOI: 10.5066/p9c1yrv3
title: CE-QUAL-W2 water-quality model for Green Peter and Foster Lakes and the South Santiam River, Oregon: 2002-2011

description: Green Peter Dam on the Middle Santiam River and the downstream Foster Dam on the South Santiam River in Oregon have altered natural seasonal temperature patterns in those rivers. In response, the U.S. Army Corps of Engineers is leading efforts to improve conditions for Chinook salmon upstream and downstream of these dams by considering structural alterations and by exploring changes to the way the dams are operated. This data release includes the input and output files from a mechanistic water-quality model (CE-QUAL-W2) that was developed for Green Peter and Foster Lakes and the South Santiam River downstream of Foster Dam. The model was used to estimate how operations at Green Peter and Foster Dams affect water temperature in Foster Lake and in the South Santiam River downstream of Foster Dam, and how the dams can be operated to produce more optimum water temperatures to support fish requirements. The model results provide guidance to reservoir operators and water-resource professionals who seek to manage the South Santiam River Basin for multiple purposes, including improved conditions for endangered anadromous fish.
DOI: 10.5281/zenodo.4535969
title: Dataset related to article "The immune-metabolic-prognostic index and clinical outcomes in patients with non-small cell lung carcinoma under checkpoint inhibitors"

description: This record contains raw data related to article “The immune-metabolic-prognostic index and clinical outcomes in patients with non-small cell lung carcinoma under checkpoint inhibitors" Abstract <strong>Purpose: </strong> This prospective study evaluated whether peripheral blood biomarkers and metabolic parameters on F-18 fludeoxyglucose positron emission tomography/computed tomography (F-18 FDG PET/CT) could be associated with clinical outcome in non-small cell lung carcinoma (NSCLC) patients treated with immune checkpoint inhibitors (ICI). <strong>Methods: </strong> Data from 33 patients with NSCLC and treated with ICI were collected. Complete blood cell counts before and at the first restaging were measured. All patients underwent F-18 FDG PET/CT at baseline, while 25 patients at the first restaging. Progression-free survival (PFS) and overall survival (OS) were determined and compared using the Kaplan-Meier and the log-rank test. The median follow-up was 11.3 months (range 1-17 months). <strong>Results: </strong> Multivariate analyses demonstrated that low neutrophil-to-lymphocyte ratio (NLR &lt; 4.9) and low total lesion glycolysis (TLG &lt; 541.5 ml) at the first restaging were significantly associated with PFS (both p = 0.019) and OS (p = 0.001 and p = 0.048, respectively). An immune-metabolic-prognostic index (IMPI), based on post-NLR and post-TLG was developed, categorizing 3 groups: high risk, 2 factors; intermediate risk, 1 factor; low risk, 0 factors. Median PFS for low, intermediate and high risk was 7.8 months (95% CI 4.6-11.0), 5.6 months (95% CI 3.8-7.4), and 1.8 months (95% CI 1.6-2.0) (p &lt; 0.001) respectively. Likewise, median OS was 15.2 months (95% CI 10.9-19.6), 13.2 months (95% CI 5.9-20.3), and 2.8 months (95% CI 1.4-4.2) (p &lt; 0.001), respectively. <strong>Conclusion: </strong> IMPI at the first restaging, combining both inflammatory and metabolic biomarkers, was correlated with PFS and OS. IMPI can be a potentially valuable tool for identifying NSCLC patients who are likely to benefit from ICI.
DOI: 10.5281/zenodo.4535968
title: Dataset related to article "The immune-metabolic-prognostic index and clinical outcomes in patients with non-small cell lung carcinoma under checkpoint inhibitors"

description: This record contains raw data related to article “The immune-metabolic-prognostic index and clinical outcomes in patients with non-small cell lung carcinoma under checkpoint inhibitors" Abstract <strong>Purpose: </strong> This prospective study evaluated whether peripheral blood biomarkers and metabolic parameters on F-18 fludeoxyglucose positron emission tomography/computed tomography (F-18 FDG PET/CT) could be associated with clinical outcome in non-small cell lung carcinoma (NSCLC) patients treated with immune checkpoint inhibitors (ICI). <strong>Methods: </strong> Data from 33 patients with NSCLC and treated with ICI were collected. Complete blood cell counts before and at the first restaging were measured. All patients underwent F-18 FDG PET/CT at baseline, while 25 patients at the first restaging. Progression-free survival (PFS) and overall survival (OS) were determined and compared using the Kaplan-Meier and the log-rank test. The median follow-up was 11.3 months (range 1-17 months). <strong>Results: </strong> Multivariate analyses demonstrated that low neutrophil-to-lymphocyte ratio (NLR &lt; 4.9) and low total lesion glycolysis (TLG &lt; 541.5 ml) at the first restaging were significantly associated with PFS (both p = 0.019) and OS (p = 0.001 and p = 0.048, respectively). An immune-metabolic-prognostic index (IMPI), based on post-NLR and post-TLG was developed, categorizing 3 groups: high risk, 2 factors; intermediate risk, 1 factor; low risk, 0 factors. Median PFS for low, intermediate and high risk was 7.8 months (95% CI 4.6-11.0), 5.6 months (95% CI 3.8-7.4), and 1.8 months (95% CI 1.6-2.0) (p &lt; 0.001) respectively. Likewise, median OS was 15.2 months (95% CI 10.9-19.6), 13.2 months (95% CI 5.9-20.3), and 2.8 months (95% CI 1.4-4.2) (p &lt; 0.001), respectively. <strong>Conclusion: </strong> IMPI at the first restaging, combining both inflammatory and metabolic biomarkers, was correlated with PFS and OS. IMPI can be a potentially valuable tool for identifying NSCLC patients who are likely to benefit from ICI.
DOI: 10.15468/3xr9f3
title: A review of the Iranian species of the family Onychiuridae (Collembola Poduromorpha), with description of five new species from Hyrcanian Forests in Iran

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yahyapour, Eliye, Shayanmehr, Masoumeh, Vafaei-Shoushtari, Reza, Arbea, Javier I. (2020): A review of the Iranian species of the family Onychiuridae (Collembola Poduromorpha), with description of five new species from Hyrcanian Forests in Iran. Zootaxa 4861 (1): 1-22, DOI: https://doi.org/10.11646/zootaxa.4861.1.1
DOI: 10.6084/m9.figshare.13918100
title: Dataset for 'Improvements to the use of the Trajectory-Adaptive Multilevel Sampling algorithm for the study of rare events'

description: The 'datasets' folder contains the transition probability estimates for various score functions for a triple-well system.<br>The 'scripts' folder contain the script used to plot the data, along with additional data.<br>The 'figures' folder contains the typical figures obtained with the script.<br>The 'trajectory_estimation_data' contains the transition path generated by empirical histograms.
DOI: 10.5281/zenodo.4535981
title: dataset for Bio 440 Mod 3 - BAM files

description: mapped & filtered sequencing read for hg19, as modified from https://training.galaxyproject.org/training-material/topics/variant-analysis/tutorials/exome-seq/tutorial.html#read-mapping
DOI: 10.5281/zenodo.4535980
title: dataset for Bio 440 Mod 3 - BAM files

description: mapped & filtered sequencing read for hg19, as modified from https://training.galaxyproject.org/training-material/topics/variant-analysis/tutorials/exome-seq/tutorial.html#read-mapping
DOI: 10.5281/zenodo.4536002
title: Dataset for: Validation of a Polish version of the National Institutes of Health Stroke Scale- can moderate psychometric properties affect its clinical utility?

description: Please find a data used for calculations of reliability, validity and psychometric properties of a Polish version of NIHSS.
DOI: 10.5281/zenodo.4536001
title: Dataset for: Validation of a Polish version of the National Institutes of Health Stroke Scale- can moderate psychometric properties affect its clinical utility?

description: Please find a data used for calculations of reliability, validity and psychometric properties of a Polish version of NIHSS.