cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ssrmdv
title: Occurrence Download

description: A dataset containing 1830 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Mytilus galloprovincialis Lamarck, 1819",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1830 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010066-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3z4rhn
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dontostemon senilis Maxim."
 ]
}

 The dataset includes 107 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032847-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec3xwj
title: Occurrence Download

description: A dataset containing 6027 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Artemisia japonica Thunb."
 ]
}

 The dataset includes 6027 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044671-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wirq1z
title: Occurrence Download

description: A dataset containing 8300 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Falco biarmicus sp. feldeggi Schlegel, 1844"
 ]
}

 The dataset includes 8300 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010067-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uy69xa
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hoplostethus cadenati Quéro, 1974"
 ]
}

 The dataset includes 130 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032629-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qar5sa
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Basananthe pubiflora J.J.de Wilde"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044715-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bcsoho
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Canis lupus baileyi Nelson & Goldman, 1929",
 "Country is Mexico"
 ]
}

 The dataset includes 68 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010067-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pebqzg
title: Occurrence Download

description: A dataset containing 24056 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Krameriaceae)"
 ]
}

 The dataset includes 24056 records from 396 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032633-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.js7guz
title: Occurrence Download

description: A dataset containing 268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Occurrence evidence)",
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Erigeron sumatrensis Retz."
 ]
}

 The dataset includes 268 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044721-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqihfg
title: Occurrence Download

description: A dataset containing 7158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zalophus californianus (Lesson, 1828)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7158 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010067-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yb9sx5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echinops malacophyllus Rech.fil."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032631-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ctr57v
title: Occurrence Download

description: A dataset containing 5842 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Limnodynastes dorsalis (Gray, 1841)"
 ]
}

 The dataset includes 5842 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044751-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dvako8
title: Occurrence Download

description: A dataset containing 1071 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Fig. 11) Distribution of dinoflagellate cysts in Early Cretaceous sediments of DSDP Hole 41-370 in the North Atlantic"
 ]
}

 The dataset includes 1071 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010067-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zq7rk
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypochilus coylei Platnick, 1987"
 ]
}

 The dataset includes 72 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039571-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5933e
title: Occurrence Download

description: A dataset containing 4961 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Drymophila ochropyga (Hellmayr, 1906)"
 ]
}

 The dataset includes 4961 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032642-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mrhpgp
title: Occurrence Download

description: A dataset containing 3649 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chenopodium giganteum D.Don"
 ]
}

 The dataset includes 3649 records from 219 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044822-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12806419
title: Emergence of inflammatory fibroblasts with aging in Hermansky-Pudlak syndrome associated pulmonary fibrosis

description: The longitudinal cellular interactions that drive pulmonary fibrosis are not well understood. To investigate the disease underpinnings associated with fibrosis onset and progression, we generated a scRNAseq atlas of lungs from young and aged mouse models of multiple subtypes of Hermansky-Pudlak syndrome (HPS), a collection of rare autosomal recessive diseases associated with albinism, platelet dysfunction, and pulmonary fibrosis. We identified an age-dependent increase in SAA3+ inflammatory lung fibroblasts in HPS mice, including in double-mutant HPS1-2 mice which develop spontaneous fibrosis. HPS1 fibroblasts showed increased expression of IL-1R1, whereas alveolar type II epithelial cells from HPS2 mice induced the inflammatory gene signature in co-cultured fibroblasts. scRNAseq of lung tissue from three HPS1 patients similarly showed the presence of inflammatory fibroblasts and increased IL1R1 expression on fibroblasts. These data posit complex interactions between dysfunctional epithelial cells, inflammatory fibroblasts, and recruited immune cells, suggesting potential opportunities for mitigation of the fibrotic cascade. 

This record contains gzipped anndata h5ad (hdf5) files corresponding to the human scRNA-seq data analyzed during this study. One file (`adata_processed_data_generated_in_study_zenodo.h5ad`) contains only data derived from new samples processed in this study. Another file (`adata_processed_combined_zenodo.h5ad`) contains the aforementioned data from new samples, as well as data from previously published studies that are publicly available (Guo et. al., 2023, Tsukui et.al., 2022, Habermann et. al., 2020). Raw gene expression counts, as well as normalized counts, are provided as values in the `layers` attribute of the anndata object. Cell annotations and projection coordinates are similarly provided in the `obs` and `obsm` attributes of the object, respectively. The AnnData and Scanpy python libraries are required to load and re-process these data.
DOI: 10.5281/zenodo.12806420
title: Emergence of inflammatory fibroblasts with aging in Hermansky-Pudlak syndrome associated pulmonary fibrosis

description: The longitudinal cellular interactions that drive pulmonary fibrosis are not well understood. To investigate the disease underpinnings associated with fibrosis onset and progression, we generated a scRNAseq atlas of lungs from young and aged mouse models of multiple subtypes of Hermansky-Pudlak syndrome (HPS), a collection of rare autosomal recessive diseases associated with albinism, platelet dysfunction, and pulmonary fibrosis. We identified an age-dependent increase in SAA3+ inflammatory lung fibroblasts in HPS mice, including in double-mutant HPS1-2 mice which develop spontaneous fibrosis. HPS1 fibroblasts showed increased expression of IL-1R1, whereas alveolar type II epithelial cells from HPS2 mice induced the inflammatory gene signature in co-cultured fibroblasts. scRNAseq of lung tissue from three HPS1 patients similarly showed the presence of inflammatory fibroblasts and increased IL1R1 expression on fibroblasts. These data posit complex interactions between dysfunctional epithelial cells, inflammatory fibroblasts, and recruited immune cells, suggesting potential opportunities for mitigation of the fibrotic cascade. 

This record contains gzipped anndata h5ad (hdf5) files corresponding to the human scRNA-seq data analyzed during this study. One file (`adata_processed_data_generated_in_study_zenodo.h5ad`) contains only data derived from new samples processed in this study. Another file (`adata_processed_combined_zenodo.h5ad`) contains the aforementioned data from new samples, as well as data from previously published studies that are publicly available (Guo et. al., 2023, Tsukui et.al., 2022, Habermann et. al., 2020). Raw gene expression counts, as well as normalized counts, are provided as values in the `layers` attribute of the anndata object. Cell annotations and projection coordinates are similarly provided in the `obs` and `obsm` attributes of the object, respectively. The AnnData and Scanpy python libraries are required to load and re-process these data.
DOI: 10.15156/bio/sh0187852.10fu
title: SH0187852.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0187853.10fu
title: SH0187853.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0187854.10fu
title: SH0187854.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0187855.10fu
title: SH0187855.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.67nu5q
title: Occurrence Download

description: A dataset containing 4224387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ukraine",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 4224387 records from 1199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001847-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0187856.10fu
title: SH0187856.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.m7yf55
title: Occurrence Download

description: A dataset containing 7242 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calophyllum inophyllum L."
 ]
}

 The dataset includes 7242 records from 229 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016537-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ajpftk
title: Occurrence Download

description: A dataset containing 12837 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Aucuba japonica Thunb."
 ]
}

 The dataset includes 12837 records from 242 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016536-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fm3xx4
title: Occurrence Download

description: A dataset containing 64558 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-6.43398 36.74669,-6.04272 36.1645,-5.59276 35.99058,-4.9863 36.46401,-4.507 36.57407,-4.68307 37.22332,-5.12324 37.44886,-5.88621 37.58075,-6.43398 36.74669))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 64558 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020822-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14837243
title: sula_dactylatra_spades_01.fasta.gz
DOI: 10.5281/zenodo.14837244
title: sula_dactylatra_spades_01.fasta.gz
DOI: 10.15468/dl.pyb7jm
title: Occurrence Download

description: A dataset containing 1023984 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Allium L."
 ]
}

 The dataset includes 1023984 records from 3219 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020819-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9edjwc
title: Occurrence Download

description: A dataset containing 1003 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetronarce nobiliana (Bonaparte, 1835)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1003 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004749-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6eknz8
title: Occurrence Download

description: A dataset containing 5521 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "GadmGid is BEN",
 "OccurrenceStatus is Present",
 "TaxonKey is Protozoa"
 ]
}

 The dataset includes 5521 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004750-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5988300b
title: MassIVE MSV000095602 - Proteomic Analysis of Hepatic Fbp1 Deficiency in Mouse Livers
title: Data from study comparing liver tissue of mice deficient of hepatic Fbp1. Lack of Fbp1 reveals Fbp1 and NRF2 as important protein regulations in metabolic dysfunction-associated steatohepatitis (MASH).
DOI: 10.6084/m9.figshare.26604583.v1
title: Additional file 2 of Energy stress-induced circZFR enhances oxidative phosphorylation in lung adenocarcinoma via regulating alternative splicing

description: Additional file 2: Supplementary Table S1-S2.xlsx
DOI: 10.15468/dl.kkffsp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.513233 -32.573601, 148.513233 -32.575846, 148.515479 -32.575846, 148.515479 -32.573601, 148.513233 -32.573601))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067038-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26604583
title: Additional file 2 of Energy stress-induced circZFR enhances oxidative phosphorylation in lung adenocarcinoma via regulating alternative splicing

description: Additional file 2: Supplementary Table S1-S2.xlsx