cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/112638
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY13TC using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119522
title: Meteorological Station data collected during research cruise HLY13TC using a SIO MET-System instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112643
title: Multibeam Echosounder data collected during research cruise HLY13TC using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7562435
title: Efficacy of heavy eccentric calf training for treating mid-portion Achilles tendinopathy: a systematic review and meta-analysis.

description: Murphy MC, Travers MJ, Chivers P, Debenham JR, Docking SI, Rio EK & Gibson W. Efficacy of heavy eccentric calf training for treating mid-portion Achilles tendinopathy: a systematic review and meta-analysis. 2019; In Press
DOI: 10.7284/113453
title: Singlebeam Echosounder data collected during research cruise HLY13TC using a Knudsen 3260 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112640
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY13TD using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119524
title: Meteorological Station data collected during research cruise HLY13TD using a SIO MET-System instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7562435.v2
title: Murphy, MC, et al. Efficacy of heavy eccentric calf training for treating mid-portion Achilles tendinopathy: a systematic review and meta-analysis. Br J Sports Med 2019.

description: Dataset for published article.
DOI: 10.7284/112645
title: Multibeam Echosounder data collected during research cruise HLY13TD using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113455
title: Singlebeam Echosounder data collected during research cruise HLY13TD using a Knudsen 3260 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114721
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY1401 using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115527
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HLY1401 using a Sea-Bird SBE-911+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121319
title: Fluorometer data collected during research cruise HLY1401 using a Turner C3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7562354
title: Github Repo for "Pacific geoduck (Panopea generosa) resilience to natural pH variation"

description: Repo can also be found here: https://github.com/RobertsLab/Paper-geoduck-eelgrass-OA/tree/v2.0<br><br>The github repo associated with the manuscript <i>Pacific geoduck (</i>Panopea generosa<i>) resilience to natural pH variation</i> submitted to CBP part D Genomics and Proteomics, special aquaculture issue. <br>Repo contains data, scripts/notebooks for data processing, and results. <br>Abstract: Pacific geoduck aquaculture is a growing industry, however, little is known about how geoduck respond to varying environmental conditions, or how the industry will fare under projected climate conditions. To understand how geoduck production may be impacted by low pH associated with ocean acidification, multi-faceted environmental heterogeneity needs to be included to understand species and community responses. In this study, eelgrass habitats and environmental heterogeneity across four estuarine bays were leveraged to examine low pH effects on geoduck under different natural regimes, using targeted proteomics to assess physiology. Juvenile geoduck were deployed in eelgrass and adjacent unvegetated habitats for 30 days while pH, temperature, dissolved oxygen, and salinity were monitored. Across the four bays, pH was lower in unvegetated habitats compared to eelgrass habitats. However this did not impact geoduck growth, survival, or proteomic abundance patterns in gill tissue. Temperature and dissolved oxygen differences across all locations corresponded to differences in growth and targeted protein abundance patterns. Specifically, three protein abundance levels (trifunctional-enzyme β-subunit, puromycin-sensitive aminopeptidase, and heat shock protein 90-⍺) and shell growth positively correlated with dissolved oxygen variability and inversely correlated with mean temperature. These results demonstrate that geoduck may be resilient to low pH in a natural setting, but other abiotic factors (i.e. temperature, dissolved oxygen variability) may have a greater influence on geoduck physiology. In addition this study contributes to the understanding of how eelgrass patches influences water chemistry. <br>
DOI: 10.7284/121320
title: Fluorometer data collected during research cruise HLY1401 using a Turner C3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7562354.v2
title: Github Repo for "Pacific geoduck (Panopea generosa) resilience to natural pH variation"

description: Repo can also be found here: https://github.com/RobertsLab/Paper-geoduck-eelgrass-OA/tree/v2.0<br><br>The github repo associated with the manuscript <i>Pacific geoduck (</i>Panopea generosa<i>) resilience to natural pH variation</i> submitted to CBP part D Genomics and Proteomics, special aquaculture issue. <br>Repo contains data, scripts/notebooks for data processing, and results. <br>Abstract: Pacific geoduck aquaculture is a growing industry, however, little is known about how geoduck respond to varying environmental conditions, or how the industry will fare under projected climate conditions. To understand how geoduck production may be impacted by low pH associated with ocean acidification, multi-faceted environmental heterogeneity needs to be included to understand species and community responses. In this study, eelgrass habitats and environmental heterogeneity across four estuarine bays were leveraged to examine low pH effects on geoduck under different natural regimes, using targeted proteomics to assess physiology. Juvenile geoduck were deployed in eelgrass and adjacent unvegetated habitats for 30 days while pH, temperature, dissolved oxygen, and salinity were monitored. Across the four bays, pH was lower in unvegetated habitats compared to eelgrass habitats. However this did not impact geoduck growth, survival, or proteomic abundance patterns in gill tissue. Temperature and dissolved oxygen differences across all locations corresponded to differences in growth and targeted protein abundance patterns. Specifically, three protein abundance levels (trifunctional-enzyme β-subunit, puromycin-sensitive aminopeptidase, and heat shock protein 90-⍺) and shell growth positively correlated with dissolved oxygen variability and inversely correlated with mean temperature. These results demonstrate that geoduck may be resilient to low pH in a natural setting, but other abiotic factors (i.e. temperature, dissolved oxygen variability) may have a greater influence on geoduck physiology. In addition this study contributes to the understanding of how eelgrass patches influences water chemistry. <br>
DOI: 10.7284/121321
title: Fluorometer data collected during research cruise HLY1401 using a Seapoint SCF instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7562354.v1
title: Github Repo for "Pacific geoduck (Panopea generosa) resilience to natural pH variation"

description: https://github.com/RobertsLab/Paper-geoduck-eelgrass-OA/tree/v2.0<br><br>The github repo associated with the manuscript <i>Pacific geoduck (</i>Panopea generosa<i>) resilience to natural pH variation</i> submitted to CBP part D Genomics and Proteomics, special aquaculture issue. <br>Repo contains data, scripts/notebooks for data processing, and results. <br>Abstract: Pacific geoduck aquaculture is a growing industry, however, little is known about how geoduck respond to varying environmental conditions, or how the industry will fare under projected climate conditions. To understand how geoduck production may be impacted by low pH associated with ocean acidification, multi-faceted environmental heterogeneity needs to be included to understand species and community responses. In this study, eelgrass habitats and environmental heterogeneity across four estuarine bays were leveraged to examine low pH effects on geoduck under different natural regimes, using targeted proteomics to assess physiology. Juvenile geoduck were deployed in eelgrass and adjacent unvegetated habitats for 30 days while pH, temperature, dissolved oxygen, and salinity were monitored. Across the four bays, pH was lower in unvegetated habitats compared to eelgrass habitats. However this did not impact geoduck growth, survival, or proteomic abundance patterns in gill tissue. Temperature and dissolved oxygen differences across all locations corresponded to differences in growth and targeted protein abundance patterns. Specifically, three protein abundance levels (trifunctional-enzyme β-subunit, puromycin-sensitive aminopeptidase, and heat shock protein 90-⍺) and shell growth positively correlated with dissolved oxygen variability and inversely correlated with mean temperature. These results demonstrate that geoduck may be resilient to low pH in a natural setting, but other abiotic factors (i.e. temperature, dissolved oxygen variability) may have a greater influence on geoduck physiology. In addition this study contributes to the understanding of how eelgrass patches influences water chemistry. <br>
DOI: 10.26180/5c352c5110712
title: hicap validation assembly set

description: This collection contains 44 <i>Haemophilus influenzae</i> assemblies used for the validation of hicap<br>
DOI: 10.6084/m9.figshare.7562255
title: Investment equilibria

description: 'Natural Gas-fired Generation Investment Equilibria<br>in Electricity and Gas Markets'.
DOI: 10.7284/115543
title: Gravimeter data collected during research cruise HLY1401 using a Bell BGM-3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7562249
title: RQ6

description: Each CSV contains information on the metrics: precision, recall and f-measure distributed in three groups of three columns, in total nine columns. Each column shows the best value of the top-n recommendations. Each CSV file corresponds to the evaluation results for the Spark framework using the Local strategy and a different threshold value.We compute the metrics varying the threshold value by 0.1 from 0 to 1, therefore there are 11 csv files.<br>The xlsx file contains the aggregation of the top-1 values of the three metrics: precision, recall and f-measure for each threshold value.The pdf file contains the chart corresponding to the data in the xlsx file.
DOI: 10.6084/m9.figshare.7562255.v1
title: Investment equilibria

description: 'Natural Gas-fired Generation Investment Equilibria<br>in Electricity and Gas Markets'.
DOI: 10.6084/m9.figshare.7562237
title: RQ4

description: Each CSV file contains information about the number of classes in a framework according to the number of extension points defined in them.This file can be used as input to the plots.R scriptThe pdf files show the resulting graphics corresponding to the data of the csv files.
DOI: 10.6084/m9.figshare.7562246
title: RQ5

description: The CSV file contains information for each framework, about the number of times that several extension points are used together and the percentage represented from the total number of uses.
DOI: 10.6084/m9.figshare.7562249.v2
title: RQ6

description: Each CSV contains information on the metrics: precision, recall and f-measure distributed in three groups of three columns, in total nine columns. Each column shows the best value of the top-n recommendations. Each CSV file corresponds to the evaluation results for the Spark framework using the Local strategy and a different threshold value.We compute the metrics varying the threshold value by 0.1 from 0 to 1, therefore there are 11 csv files.<br>The xlsx file contains the aggregation of the top-1 values of the three metrics: precision, recall and f-measure for each threshold value.The pdf file contains the chart corresponding to the data in the xlsx file.
DOI: 10.7284/114723
title: INS (Inertial Navigation System) data collected during research cruise HLY1401 using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7562234
title: RQ3

description: The CSV file contains information on the number of extension points by category and framework.This file can be used as input to the plots.R scriptThe pdf file shows the resulting chart corresponding to the data in the csv file.
DOI: 10.6084/m9.figshare.7562246.v2
title: RQ5

description: The CSV file contains information for each framework, about the number of times that several extension points are used together and the percentage represented from the total number of uses.
DOI: 10.7284/121318
title: Meteorological Station data collected during research cruise HLY1401 using a SIO MET-System instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7562228
title: RQ2

description: The CSV file contains information on the metrics by category and framework: precision, recall and F-measure distributed in three groups of three columas, in total nine columns. Each column shows the best value of the top-n recommendationsThere are four categories and five frameworks.
DOI: 10.6084/m9.figshare.7562237.v1
title: RQ4

description: data
DOI: 10.6084/m9.figshare.7562246.v1
title: RQ5

description: data
DOI: 10.6084/m9.figshare.7562234.v2
title: RQ3

description: The CSV file contains information on the number of extension points by category and framework.This file can be used as input to the plots.R scriptThe pdf file shows the resulting chart corresponding to the data in the csv file.
DOI: 10.7284/114722
title: Multibeam Echosounder data collected during research cruise HLY1401 using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7562234.v1
title: RQ3

description: asdasd
DOI: 10.6084/m9.figshare.7562216
title: RQ1

description: Each CSV file corresponds to a framework and a specific strategy and contains information on the metrics: precision, recall and f-measure distributed in three groups of three columas, in total nine columns. Each column shows the best value of the top-n recommendations. There are three strategies and five frameworks, therefore there are 15 files.
DOI: 10.7284/121322
title: Oxygen data collected during research cruise HLY1401 using a Sea-Bird SBE-43 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7562228.v1
title: RQ2

description: ASDASDA
DOI: 10.6084/m9.figshare.7562192
title: Rat Motor Cortex and Body Movement Recordings [Shew Lab]

description: Single unit neural activity was recorded from deep layers of rat motor cortex during spontaneous free body movement (no task). Simultaneous with the neural recordings, body movement data was acquired by tracking the 3D coordinates of 8 beads attached to the rat's back as it moved about.<br>Some of the recordings were done with pharmacologically altered inhibitory neural interactions (GABA receptor agonists or antagonists). These manipulations were done locally in motor cortex or systemically. The two zip files correspond to these two categories of experiments.<br><br>This work was funded by Foundational Questions Institute (grant number FQXi-RFP3-1343) and the Arkansas Biosciences Institute.<br>Please cite the original publication if you use this data.<br>
DOI: 10.6084/m9.figshare.7562216.v2
title: RQ1

description: Each CSV file corresponds to a framework and a specific strategy and contains information on the metrics: precision, recall and f-measure distributed in three groups of three columas, in total nine columns. Each column shows the best value of the top-n recommendations. There are three strategies and five frameworks, therefore there are 15 files.
DOI: 10.7284/121323
title: Oxygen data collected during research cruise HLY1401 using a Sea-Bird SBE-43 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7562192.v1
title: Rat Motor Cortex and Body Movement Recordings [Shew Lab]

description: Single unit neural activity was recorded from deep layers of rat motor cortex during spontaneous free body movement (no task). Simultaneous with the neural recordings, body movement data was acquired by tracking the 3D coordinates of 8 beads attached to the rat's back as it moved about.<br>Some of the recordings were done with pharmacologically altered inhibitory neural interactions (GABA receptor agonists or antagonists). These manipulations were done locally in motor cortex or systemically. The two zip files correspond to these two categories of experiments.<br><br>This work was funded by Foundational Questions Institute (grant number FQXi-RFP3-1343) and the Arkansas Biosciences Institute.<br>
DOI: 10.6084/m9.figshare.7562216.v1
title: RQ1

description: asdasd
DOI: 10.6084/m9.figshare.7562189
title: plots.R

description: Scripts in the R language for generating graphics from .csv files corresponding to some RQs
DOI: 10.7284/115530
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise HLY1401 using a LDEO pCO2 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115536
title: Singlebeam Echosounder data collected during research cruise HLY1401 using a Knudsen 3260 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115544
title: Gravimeter data collected during research cruise HLY1402 using a Bell BGM-3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114728
title: INS (Inertial Navigation System) data collected during research cruise HLY1402 using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121324
title: Meteorological Station data collected during research cruise HLY1402 using a SIO MET-System instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114727
title: Multibeam Echosounder data collected during research cruise HLY1402 using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115532
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise HLY1402 using a LDEO pCO2 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115538
title: Singlebeam Echosounder data collected during research cruise HLY1402 using a Knudsen 3260 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114732
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY1403 using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115529
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HLY1403 using a Sea-Bird SBE-911+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121337
title: Fluorometer data collected during research cruise HLY1403 using a Turner C3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121338
title: Fluorometer data collected during research cruise HLY1403 using a Turner C3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121339
title: Fluorometer data collected during research cruise HLY1403 using a Seapoint SCF instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115546
title: Gravimeter data collected during research cruise HLY1403 using a Bell BGM-3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114734
title: INS (Inertial Navigation System) data collected during research cruise HLY1403 using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121336
title: Meteorological Station data collected during research cruise HLY1403 using a SIO MET-System instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114733
title: Multibeam Echosounder data collected during research cruise HLY1403 using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121340
title: Oxygen data collected during research cruise HLY1403 using a Sea-Bird SBE-43 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121341
title: Oxygen data collected during research cruise HLY1403 using a Sea-Bird SBE-43 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115534
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise HLY1403 using a LDEO pCO2 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition