cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27307665.v1
title: Elsafty_Reports_of_Myeloid_Neoplasms_2024

description: The aim of the collected dataset (Elsafty_Reports_of_Myeloid_Neoplasms_2024) is to provide specialized, world-class, and comprehensive templates for myeloid neoplasms that serve purposes in Hematopathology practice, teaching/training/examination, and automation, including verification and validation of relevant automated systems. This validated, up-to-date, 100% accurate, machine-readable, and novel/unprecedented dataset has been meticulously reviewed word-by-word by both Hematopathologists and attending physicians from various specialties who detect or diagnose such cases at multiple international medical centres. Such meticulous review, referencing the WHO 5th edition, the international consensus classification of myeloid neoplasms and acute leukemias, along with other relevant esteemed publications, justifies the complexity and diversity of the dataset while maintaining benchmark scientific quality. <br><br>The online web-based software developed for the automated generation of CBC and PBS review narrative interpretation, as well as for complete personalized Hematopathology CPC (<i>https://cbctst.com</i>), demonstrates the utility of this dataset in supporting the validation of such clinical-fit tools, which are requested to assist senior Hematopathologists by saving time and effort, addressing workforce shortages and stress, and minimizing liability and clerical errors.
DOI: 10.6084/m9.figshare.29137547.v1
title: genome annotation of Xingan mandarin (Citrus reticulata ‘Xingan’)

description: annotation file of A high-quality chromosome-scale genome assembly of Xingan mandarin (Citrus reticulata ‘Xingan’), a primitive Mandarin type
DOI: 10.17608/k6.auckland.12738986.v1
title: Supplementary_table_1

description: Supplementary_table_1
DOI: 10.6084/m9.figshare.25222052.v2
title: doubletroubledb data - Ensembl Fungi

description: This data set contains duplicated gene pairs, duplicated genes, and .collinearity files (as returned by the syntenet R package) for all species on Ensembl Fungi release 57.
DOI: 10.6084/m9.figshare.25522918.v2
title: DeepGCL的

description: 我们引入了一种新的深度图对比学习模型（DeepGCL），用于药物相互作用预测。DeepGCL利用图对比学习将分子结构特征和网络拓扑特征结合起来。
DOI: 10.6084/m9.figshare.28919534.v1
title: <b>Precise Classification of Oral Diseases</b>

description: The early and accurate diagnosis of oral diseases is essential for effective treatment and improved patient outcomes.https://www.kaggle.com/datasets/salmansajid05/oral-diseases/data
DOI: 10.6084/m9.figshare.29056895.v1
title: NMA_test

description: It contains SVD data
DOI: 10.17632/nbwhzctrjp
title: Stocks daily data for comparing performance metrics applied to ML algorithms

description: SQL database (accessed with SQlite3 in Python)
Daily OHLCV of DJIU, CACA40, BEL20, AEX and FTSE for testing main performance metrics and D-ratio with AI models predicting asset returns.
1. Daily returns are computed as target variable
2. Various AI models (MLP, LSTM, ResNet, XGB, PPO,...) have been tested for their ability to predict returns
3. Dozens of performance metrics usually applied in the literature have been assessed to identify the best performing algorithms: MSE, RMSE, MAE, MAPE,... , Accuracy, F1, precision, recall, R, R², Matthews correlation coefficient, Cohen's kappa, Sharpe, Sortino, Calmar,... 
4. A new metric "D-ratio" has been tested
DOI: 10.6084/m9.figshare.1106875.v1
title: Categories of websites blocked by UK universities

description: Some universities in the UK block websites using third-party content filtering software. This software offers various categories of filtering (eg. "pornography", "gambling", "weapons" etc.) and a university selects which of these categories it would like to block. This table lists some of the categories those universities have chosen to filter on their network. The lists of categories for each institution were obtained under freedom of information requests made in June 2014. If categories are listed for an institution, this does not necessairily mean all computers on that university network block these categories, but at least some of their computers do. This is a non-exhaustive, work-in-progress list of universities, since not all universities were contacted. If any information is incorrect, or you have information from a universitiy which isn't listed, let me know and I will update it.
DOI: 10.6084/m9.figshare.20079107.v1
title: Supplementary Material for: An in vitro Comparative Assessment of Single-Use Flexible Ureteroscopes Using a Standardized Ureteroscopy Training Model

description: <b><i>Introduction:</i></b> Perceived benefits like decreased contamination rates and reduced postoperative incidence of complications after urolithiasis surgery have led to increased adoption of single-use flexible ureteroscopes (su-fURS). Using a validated, standardized simulator model with enhanced “fluoroscopic” capabilities, we performed an in vitro comparative assessment of four commercially available models of su-fURS. Both objective and subjective parameters were assessed in this study. <b><i>Methods:</i></b> Two standardized tasks, (1) exploration of the model’s kidney collecting system and (2) repositioning of a stone fragment from the upper renal to lower renal pole were assigned to participants, who performed these tasks on all four scopes. Four models of su-fURS (Boston LithoVue, PUSEN PU3033A, REDPINE, INNOVEX EU-Scope<sup>TM</sup>) were assessed, with task timings as end-points for objective analysis. Cumulative “fluoroscopic” time was also recorded as a novel feature of our enhanced model. Post-task questionnaires evaluating specific components of the scopes were distributed to document subjective ratings. <b><i>Results:</i></b> Both subjective and objective performances (except stone repositioning time) across all four su-fURS demonstrated significant differences. However, objective performance (task timings) did not reflect subjective scope ratings by the participants (<i>R</i><sub>s</sub> &lt; 0.6). Upon Kruskal-Wallis <i>H</i> test with post hoc analyses, REDPINE and INNOVEX EU-Scope<sup>TM</sup> were the preferred su-fURS as rated by the participants, with overall scope scores of 9.00/10 and 9.57/10. <b><i>Conclusions:</i></b> Using a standardized in vitro simulation model with enhanced fluoroscopic capabilities, we demonstrated both objective and subjective differences between models of su-fURS. However, variations in perception of scope features (visibility, image quality, deflection, maneuverability, ease of stone retrieval) did not translate into actual technical performance. Eventually, the optimal choice of su-fURS fundamentally lies in individual surgeon preference, as well as cost-related factors.
DOI: 10.6084/m9.figshare.20425518.v4
title: Diabetes Datasets, ShanghaiT1DM and ShanghaiT2DM

description: There are two datasets from Chinese diabetes patients, ShanghaiT1DM and ShanghaiT2DM
DOI: 10.6084/m9.figshare.26543929.v2
title: Datasets used in the Crop Trials Web Dashboard - https://www.avyield.com/

description: These datasets comprise crop yield trial data for multiple crops, including canola, corn, sorghum, soybean, sunflower, and wheat. The data were collected across various locations, primarily in Kansas and other states within the continental US. Each dataset includes detailed yield information for different genotypes, facilitating the analysis of crop performance across various environments. The data are intended to support decision-making in agriculture by allowing users to assess yield trends and make informed choices on crop management.
DOI: 10.6084/m9.figshare.5151907.v1
title: Supplementary environmental point data: "A climate-associated multi-species cryptic genetic cline in the northwest Atlantic"

description: This is supplementary environmental data used in environmental population structure analyses: <br>"A climate-associated multi-species cryptic genetic cline in the northwest Atlantic"<br><br>This data is described in the methods as:<br>Temperature and salinity data were aggregated to seasonal climatological data (averaged across 2002-2012) layers, effectively corresponding with winter (January – March), spring (April – June), summer (July – September), and fall (October – December). Seasonal sea surface temperature (SST) and sea surface salinity (SSS) were assembled at spatial resolutions interpretable to 1 km<sup>2 </sup>from Level 3 SST climatological satellite data, including Advanced Very High Resolution Radiometer data (AVHRR Atlantic; compiled by Fisheries and Oceans Canada) and global oceanographic climatological SSS composites (Tyberghein<i> et al.</i> 2012). Benthic temperature and benthic salinity climatological data layers were assembled at spatial resolutions interpretable to 8 km<sup>2 </sup>from a numerical climatological model (GLORYS2V1) adapted to the study area by Fisheries and Oceans Canada. We represented topographic complexity of the seafloor (interpretable to 1 km<sup>2</sup>) by east–west and north–south components of aspect, slope, plan and profile curvature, and rugosity (Sbrocco & Barber 2013). These data layers were used as predictive surfaces for each of the five species native to the range (Table 1). From these data layers, we extracted point estimates of each environmental variable for each genetic sample location to evaluate genetic-environmental relationships. This dataset represents these point estimates.
DOI: 10.6084/m9.figshare.9699068.v1
title: Community Temperature Index values for North Pacific and North Atlantic bottom trawls and plankton in 2° latitude/longitude areas annually from 1985 to 2014

description: Data to support Burrows, M. T., A. E. Bates, M. J. Costello, M. Edwards, G. J. Edgar, C. J. Fox, B. S. Halpern, J. G. Hiddink, M. L. Pinsky, R. D. Batt, J. García Molinos, B. Payne, D. Schoeman, R. D. Stuart-Smith, and E. S. Poloczanska. 2018. Thermal affinities and vertical temperature gradients explain recent responses to warming in ocean communities. Nature Climate Change, in review.<br>
DOI: 10.17632/dfcks8ymmc
title: Children's Industrial Extracurricular Education (Russia)

description: Extracurricular activities and additional educational programs are considered as an element of the system of children’s vocational guidance: empirical studies demonstrate a high potential for vocational training and development, as well as the development of competencies focused on choosing a profession. At the same time, there is specific focus on activities related to vocational guidance and career education. In order to increase the effectiveness of programs that provide educational and professional transfer as their ideal result (the "school – university – enterprise" model), it is important to involve the industry partners that provide not only financial or logistical support, but set a reference professional image. This data is based on survey of children, teachers and managers of children’s maritime and railway extracurricular education organizations and programs conducted in 2021 and 2022 and includes 3,539 respondents from 37 regions of the Russian Federation.
DOI: 10.17632/wpzd2wxtgn
title: Trace, quantify, and model multi-signal neuron morphology

description: The zipped folder contains eight separate folders: i) Finalized Imagestacks, ii) Repair, iii) Scaling, iv) Quantify, v) Simulate, vi) TREES1.15, and vii) Vaa3D_MultiChannel_Compiled_Library, viii) StepByStepFiles Details: i) Finalized_Imagestacks: Finalized imagestacks for three neuron types that are used to trace the neurons and produce the multi-signal swc files. ii) Repair: Topological repair folder. Copy the initially traced files here and then repair them. iii) Scaling: Scaling folder. Copy the outputs from the Multi-channel plugin folder, scale the multisignal files (from voxel to physical dimension) to finalize them. iv) Quantify: Quantification of Cytoskeletal morphometrics folder. Several subfolders contain different parts of the Quantification process. v) Simulate: Simulation of virtual neuron arbor: subfolders for each three neurontype simulation and analysis. vi) TREES1.15: TREES Toolbox package with a few custom updates. vii) Vaa3D_MultiChannel_Compiled_Library: Compiled Multi-channel swc libraries for Vaa3d 3.1 (for both windows and mac) vii) StepByStepFiles: Intermediate and finalized image stack and Reconstruction of an example Class IV Wild Type neuron.
DOI: 10.6084/m9.figshare.11493039.v1
title: Dataset_Mao et al..xls

description: Dataset of the article titled "Responses of foliar nutrient status and stoichiometry to nitrogen addition in different ecosystems: a meta-analysis", with information of study references, means and SD and n (for element concentration), effect sizes (lnRR) (for N: other elements), and other relevant variables.
DOI: 10.6084/m9.figshare.11919756.v1
title: The zinc finger domains in U2AF26 and U2AF35 have diverse functionalities including a role in controlling translation

description: Recent work has associated point mutations in both zinc fingers (ZnF) of the spliceosome component U2AF35 with malignant transformation. However, surprisingly little is known about the functionality of the U2AF35 ZnF domains in general. Here we have analysed key functionalities of the ZnF domains of mammalian U2AF35 and its paralog U2AF26. Both ZnFs are required for splicing regulation, whereas only ZnF2 controls protein stability and contributes to the interaction with U2AF65. These features are confirmed in a naturally occurring splice variant of U2AF26 lacking ZnF2, that is strongly induced upon activation of primary mouse T cells and localized in the cytoplasm. Using Ribo-Seq in a model T cell line we provide evidence for a role of U2AF26 in activating cytoplasmic steps in gene expression, notably translation. Consistently, an MS2 tethering assay shows that cytoplasmic U2AF26/35 increase translation when localized to the 5ʹUTR of a model mRNA. This regulation is partially dependent on ZnF1 thus providing a connection between a core splicing factor, the ZnF domains and the regulation of translation. Altogether, our work reveals unexpected functions of U2AF26/35 and their ZnF domains, thereby contributing to a better understanding of their role and regulation in mammalian cells.
DOI: 10.6084/m9.figshare.14600634.v1
title: Draft Genome of the Mirrorwing Flyingfish (Hirundichthys speculiger)

description: Genome assembly and annotation<br>
DOI: 10.6084/m9.figshare.19669518.v1
title: Australian region cyclone tracks from RCMs

description: This folder contains cyclone tracks generated for Pepler and Dowdy (2022) <br> These cyclones were identified using the Murray and Simmonds (1991) and Simmonds et al. (1999) cyclone tracking scheme. The source code and documntation is available at https://cyclonetracker.earthsci.unimelb.edu.au/ Tracks are provided for 12 RCM simulations over the Australian region for 1980-2009 and 2070-2099 based on rcp8.5. Surface cyclones are tracked using 6-hourly MSLP, and upper cyclones are tracked using daily 500 hPa geopotential height. <br> Cyclones are tracked using weak Laplacian minimums of 0.5 hPa (deg.lat.)^-2 at the surface and 1 m (deg.lat.)^-2 at 500 hPa; this is weaker than the final minima applied in the paper (0.8 and 6 respectively), in case users are interested in weaker systems. <br> Filenames are structured as: Upper: UM_lows_$RCM_$GCM_$RCP_500hPa_proj100_rad2cv1_bigaust_daily_fixes.csv Surface: UM_lows_$RCM_$GCM_$RCP_proj100_rad2cv0.5_bigaust_fixes.csv <br> **Proj100 - Indicates the cyclones were tracked on this projection, an ~ 1.5 degree polar grid **Rad2cvXX: Indicates the radius that laplacian was calculated over and the minimum used for tracking **Daily indicates the lows were tracked using daily mean fields rather than 6-hourly fields. **CCAM files are given by years rather than RCP, as the historical and RCP8.5 forcings were combined into a single simulation. <br> <br> Column headings: ID Track ID Fix Instance within track Date Date (UTC) Time Time (UTC) Open/closed Is there closed circulation (0) or an "open" low Lon Longitude Lat Latitude MSLP Central pressure (hPa) Laplacian Laplacian of MSLP (hPa. Deg.lat^2), which represents the curvature of the MSLP. This is a better indicator of the strength of a system Depth Depth of cyclone relative to background pressure (hPa) Radius Radius of anticyclone (degrees) Up Steering velocity (U) Vp Steering velocity (V) Location 1 indicates whether a cyclone is currently in the greater Australian region (100-180E, 10-60S, noting not all RCMs have tracks for the whole domain) <br> Tracking parameters are consistent with CMIP5 cyclones tracked for Pepler and Dowdy (2021), see https://doi.org/10.6084/m9.figshare.13393172.v1 <br> References: Murray, R. J., and I. Simmonds, 1991: A numerical scheme for tracking cyclone centres from digital data. Part I: Development and operation of the scheme. Aust. Meteorol. Mag., 39, 155166. Simmonds, I., R. J. Murray, and R. M. Leighton, 1999: A refinement of cyclone tracking methods with data from FROST. Aust. Meteorol. Mag., (special edition), 3549. Pepler, A. and Dowdy, A. 2022: Australia's future extratropical cyclones <br>
DOI: 10.6084/m9.figshare.5897020.v1
title: TEM Images

description: TEM images of the nanoparticles shown in SI
DOI: 10.6084/m9.figshare.6120134.v1
title: Figures from: The benefits of enterprise architecture for library technology management: an exploratory case study

description: This fileset contains full size versions of the figures associated with an unpublished journal submission, "The benefits of enterprise architecture for library technology management: an exploratory case study." This case study describes how librarians and enterprise architects at Griffith University worked together to document key components of the Library’s ‘as is’ enterprise architecture (EA).<br>Contents:<br><br>Figure 1. Overview of the Architecture Statement of Work.<br>Figure 2. Part of the data asset and application inventory worksheet.<br>Figure 3. Table summarizing the results of the application maturity assessment [product names redacted].<br>Figure 4. Two of the four graph types produced from the application maturity survey results, for a system [product name redacted] that is performing well.<br>Figure 5. The remaining two graph types produced from the application maturity survey results, for a system [product name redacted] that is performing well.<br><br>Figure 6. The first and second (of four) graphs for a system [product name redacted] that is end-of-life.<br><br>Figure 7. The third and final graphs for a system [product name redacted] that is end-of-life.<br><br>Figure 8. Graph from application maturity survey showing a specific area of concern (data quality) for an otherwise well-performing application [product name redacted].<br><br>Figure 9. Application communication diagram [simplified view].<br><br>Figure 10. Interactive visualization of library architecture, showing relationships between a single data sub-entity (Bibliographic records - MARC) and various applications.<br><br><br><br><br>
DOI: 10.17632/7vsbyfrhc4
title: Sound-based Multi-Equipment Activity Recognition

description: This dataset is recorded on real noisy construction job sites.
It consists of two main sound data:
1) single-equipment and 2) multi-equipment.
It consists of five case studies. The first three case studies consist of single-equipment sound for two types of heavy equipment. The last two case studies consist of both single-equipment sound data and real-world multi-equipment sound mixture.
The purpose of this dataset is to train a model using single-equipment sound data and test it on multi-equipment sound mixtures for both synthetic and real-world sound mixtures.
This dataset is recorded using an off-the-shelf Zoom H1 digital handy recorder, which is a single-channel microphone.
Because the dataset is recorded using a single-channel microphone, the process of the multi-label sound classifier is considered a software-based method. 
On the other hand, there are many datasets that are recorded using microphone arrays. The process of the multi-label sound classifier for these datasets is considered a hardware-based method.
DOI: 10.6084/m9.figshare.1285533.v1
title: Data set for positivity article (spss version)

description: Dataset used for a study titled "Does Positivity Mediate the Relation of Extraversion and Neuroticism with Subjective Happiness?"
DOI: 10.6084/m9.figshare.21534615.v1
title: HER2 binding affinity with Mobocertinib

description: These are the trajectory and the parameter files from the MD simulation for HER2 with Mobocertinib bound. After 500 ns of MD simulation for three times, for each of the mutant markov modeling was applied and the most probable states from the markov modeling was used for the MMPBSA simulation. This trajectory included here were taken from the markov modeling and then used for the binding affinity and per residue decomposition analysis using MMPBSA.py module in amber.
DOI: 10.17632/4c35hgdj4k
title: LiBP 2025

description: These are data for LiZnP and LiMgP
DOI: 10.17632/zws5pvcyzp
title: Tripartite transcription factor cooperativity anchors mSWI/SNF to poise the T cell effector landscape prior to antigen receptor expression. Gamble, Bradu, Caldwell et al. (2023)

description: Original Western Blot images from indicated figures in Gamble, Bradu, Caldwell et al. (2023) "Tripartite transcription factor cooperativity anchors mSWI/SNF to poise the T cell effector landscape prior to antigen receptor expression." File names indicate figure panel and target proteins.
DOI: 10.6084/m9.figshare.12899378.v1
title: A Critical Review of the Refutation Text Literature: Methodological Confounds, Theoretical Problems, and Possible Solutions

description: This dataset describes a corpus of refutation text studies used in our critical review of the literature. The articles were coded with particular attention to the methods used therein. <br>Please refer to the included .pdf file for more information on how these articles were analysed.
DOI: 10.6084/m9.figshare.14220389.v1
title: Airline_years

description: The is airline data for all years
DOI: 10.6084/m9.figshare.18737768.v4
title: country_list.csv and country_period_validation.csv files used in the bilateral international migration flow estimates by sex

description: Supplementary data files for Abel & Cohen (2022) including<br><br>1. <code>country_list.csv</code> with country codes, country names, first and last period covered and availability of reported data used for validation exercise.<br><br>2. <code>country_period_validation.csv</code> with types and sources of reported migration statistics for each country and period in each of collections used for the validation exercise.
DOI: 10.6084/m9.figshare.28750607.v1
title: Data from: Shifts in root exudate composition coordinate with root resource conservation along an elevation gradient

description: Through using a trait-based framework applied to roots and exudation chemistry of an alpine coniferous species along an elevation gradient on the eastern Tibetan Plateau, we observed a clear coordination of root exudate metabolic traits with classical root traits. Sampling was performed in six coniferous forest stands distributed along an elevation gradient.
DOI: 10.6084/m9.figshare.3552426.v1
title: Appendix A. Implementation of conditional permutation.

description: Implementation of conditional permutation.