cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.905qfttrt
title: Historical baleen plates indicate that once abundant Antarctic blue and fin whales demonstrated distinct migratory and foraging strategies

description: Southern hemisphere blue (Balaenoptera musculus intermedia) and fin
 (Balaenoptera physalus) whales are the largest predators in the Southern
 Ocean, with similarities in morphology and distribution. Yet,
 understanding of their life history and foraging is limited due to current
 low abundances and limited ecological data. To address these gaps,
 historic Antarctic blue (n = 5) and fin (n = 5) whale baleen plates,
 collected in 1947–1948 and recently rediscovered in the Smithsonian
 National Museum of Natural History, were analyzed for bulk (δ13C and δ15N)
 stable isotopes. Regular oscillations in isotopic ratios, interpreted as
 annual cycles, revealed that baleen plates contain approximately six years
 (14.35 ± 1.20 cm yr–1) of life history data in blue whales and four years
 (16.52 ± 1.86 cm yr–1) in fin whales. Isotopic results suggest that: 1) in
 the 1940s, blue and fin whales fed at the same trophic level but in
 slightly different habitats, 2) fin whales appear to have had more regular
 annual migrations, and 3) fin whales may have migrated to ecologically
 distinct sub-Antarctic waters annually while some blue whales may have
 resided year-round in the Southern Ocean. These results reveal differences
 in ecological niche and life history strategies between Antarctic blue and
 fin whales during a period when their populations were more abundant than
 today, and before major human-driven climatic changes occurred in the
 Southern Ocean.
description: # Historical baleen plates indicate that once abundant Antarctic blue and
 fin whales demonstrated distinct migratory and foraging strategies
 [https://doi.org/10.5061/dryad.905qfttrt](https://doi.org/10.5061/dryad.905qfttrt) ## Description of the data and file structure ### Table 1. Antarctic blue (*Balaenoptera musculus intermedia*) and fin (*Balaenoptera physalus*) whale baleen data. Metadata for each individual (museum record number, species, sex, reproductive status at time of death (pregnant or not), fetus sex and length (cm), body length (cm), capture location (latitude and longitude), capture date, whaling vessel) was derived from ship's logs from expeditions in the Southern Ocean. Laboratory data include lab ID, measurement lengths along the baleen plate (cm), and ẟ<sup>13</sup>C and ẟ<sup>15</sup>N values. Location data has been adjusted to 0.1 decimal places for the safety of the animals. ## Access information Metadata from whaling logs was derived from the Smithsonian National Museum of Natural History Mammals collections.
DOI: 10.15468/dl.dfyyb2
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Berardius arnuxii"
 ]
}

 The dataset includes 232 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003654-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.xpnvx0kmz
title: Millions of lung tumors harboring KRAS, BRAF, EGFR, and tumor suppressor alterations from genetically engineered mouse models

description: Tumors acquire alterations in oncogenes and tumor suppressor genes in an
 adaptive walk through the fitness landscape of tumorigenesis. However, the
 interactions between oncogenes and tumor suppressor genes that
 shape this landscape remain poorly resolved and cannot be revealed by
 human cancer genomics alone. Here, we use a multiplexed, autochthonous
 mouse platform to model and quantify the initiation and growth of more
 than one hundred genotypes of lung tumors across four oncogenic contexts:
 KRAS G12D, KRAS G12C, BRAF V600E, and EGFR L858R. We show that the fitness
 landscape is rugged—the effect of tumor suppressor inactivation often
 switches between beneficial and deleterious depending on the oncogenic
 context—and shows no evidence of diminishing-returns epistasis within
 variants of the same oncogene. These findings argue against a simple
 linear signaling relationship amongst these three oncogenes and imply a
 critical role for off-axis signaling in determining the fitness effects of
 inactivating tumor suppressors.
description: See manuscript methods.
description: # Millions of lung tumors harboring KRAS, BRAF, EGFR, and tumor suppressor
 alterations from genetically engineered mouse models This csv provides
 information about the 13,926,734 tumors that are the basis of all main
 manuscript figures. ## Description of the data and file structure The
 columns, with descriptions, are as follows: * "oncogene": the
 CRE-inducible oncogene allele in the mouse germline driving tumor growth.
 * "is\_cas9\_present": whether a CRE-inducible Cas9 allele is
 present in the mouse germline. * "is\_tp53\_floxed": whether
 Trp53 is flanked by LoxP sites in the mouse germline. *
 "study\_duration\_wks": the duration of tumor growth measured in
 weeks. * "mouse\_id": a unique id for each mouse. *
 "sg\_rna": the sgRNA present in this tumor. *
 "tumor\_size\_cells": the estimated size of the tumor measured
 in absolute number of cells. * "tumor\_read\_count": the number
 of raw NGS reads corresponding to this tumor. ## Code/Software Methods
 described in manuscript.
DOI: 10.15468/dl.hj7hcr
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Monodon monoceros",
 "Year 2022-2026"
 ]
}

 The dataset includes 48 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003659-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5ga64
title: Occurrence Download

description: A dataset containing 1512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Fusarium proliferatum",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2016",
 "Year is less than or equal to 2026"
 ]
}

 The dataset includes 1512 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003660-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sj57bx
title: Occurrence Download

description: A dataset containing 216890 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Species data for Scottish waters held and managed by Scottish Natural Heritage, derived from benthic surveys 1993 to 2018"
 ]
}

 The dataset includes 216890 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003611-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.z8w9ghxjt
title: Propagule phenotypic traits of Kandelia obovata and sampling sites information in China

description: Increasing studies have shown the importance of intraspecific trait
 variation (ITV) on the ecological process. However, the patterns and
 sources of ITV are still unclear, especially in the propagule of coastal
 vegetation. Here, we measured fresh weight (FW), fresh length (FL),
 maximum transverse diameter (TDmax), minimum transverse diameter (TDmin)
 and the ratio of TDmax to TDmin (RTD) of the hypocotyl (propagule) of
 Kandelia obovata for 66 genealogies across 26 sites. By combining multiple
 factors of climate, ocean and maternal tree to analyze their effects on
 the intraspecific trait variation of mangrove hypocotyl. The results
 showed that value of establishment traits (FW, FL, TDmax and TDmin which
 are related to mass) decreased along increasing latitudinal gradients and
 they were directly positively regulated by temperature. ITV of dispersal
 trait (RTD) was unstructured along latitudinal gradients, which was
 constrained by fitness tradeoff. Our findings indicate that establishment
 traits mainly varied between populations, whereas dispersal traits mainly
 varied between individuals. This study provides insights into the ITV of
 propagule in different functional dimensions on a broad scale and that may
 help integrate ITV into future analyses of mangrove protection.
description: This data file was used in our recent work: ‘Structured and unstructured
 intraspecific propagule trait variation across environmental gradients in
 a widespread mangrove’. It includes the field site information (site name,
 longitude and latitude), seven environmental factors (SAL, AHT, ALT, AFC,
 ASC, MAT and MAP), maternal tree (MH, MDBH and AGB), five propagule
 traits of *Kandelia obovate* (FW, FL, TDmax, TDmin and RTD). The
 abbreviations are showed below. **Environmental factors:** SAL, sea
 surface salinity (‰); AHT, annual highest tide (cm); ALT, annual lowest
 tide (cm); AFC, annual fastest tide current (cm/s); ASC, annual slowest
 tide current (cm/s); MAT, mean annual temperature (℃); MAP, mean annual
 precipitation (mm). **Maternal tree:** MH, tree height (m); MDBH, diameter
 at breast height (cm); AGB, aboveground biomass (kg). **Propagule
 traits:** FW, fresh weight (g); FL, fresh length (cm); TDmax, maximum
 transverse diameter (mm); TDmin, minimum transverse diameter (mm); RTD,
 ratio of TDmax to TDmin.
DOI: 10.5061/dryad.z34tmpgm5
title: Data from: Microbial composition play the leading role in volatile fatty acid production in the fermentation of different scale of corn stover with rumen fluid

description: Rumen fluid is a natural and green biocatalyst that can efficiently
 degrade biomass into volatile fatty acid (VFA) used to produce
 value-added materials. But the essence of high degradation
 efficiency in the rumen has not been fully analyzed. This study
 investigated the contribution of substrate structure
 and microbial composition to volatile fatty acid production in
 the fermentation of corn stover. The ball milled corn stover were
 innovatively applied to ferment with the rumen fluid collected at
 different digestion times. Exogeneous cellulase was also added to
 the ruminal fermentation to further reveal the inner
 mechanism. With prolonged digestion time, the microbial community
 relative abundance levels of Bacteroidetes and Firmicutes
 increased from 29.98% to 72.74% and decreased from 51.76% to
 22.11%, respectively. The highest VFA production of the corn
 stover was achieved via treatment with the rumen fluid collected at 24
 h which was up to 9508 mg/L. The ball milled corn stover achieved
 high VFA production because of the more accessible substrate
 structure. The application of exogenous cellulase has no
 significant influence to the ruminal fermentation. The microbial
 community abundance contributed more to the VFA
 production compared with the substrate structures.
description: # Data from: Microbial composition play the leading role in volatile fatty
 acid production in the fermentation of different scale of corn stover with
 rumen fluid ## Description
 of the data and file structure 338F_806R.stat The DNA sequencing data of
 the rumen fluid collected at different times. In the data, Average length
 means the average sequence length. Q20 and Q30 represent base error rates
 of 1% and 0.1%, respectively. We usually choose Q30 as the base quality
 evaluation standard, the larger the value of Q30, the
 better. Generally, the result will be better if Q30 is greater than
 85%.Sharing/Access information Data was derived from the following
 sources: The DNA was extracted from the samples and amplified via PCR
 using the primers 338F (5′-ACTCCTACGGGAGGCAGCA-3′) and 806R
 (5′-GGACTACHVGGGTWTCTAAT-3′) in the V3-V4 hypervariable regions of 16S
 rRNA.
DOI: 10.5061/dryad.59zw3r2dr
title: Out-of-plane ferroelectricity and robust magnetoelectricity in quasi two-dimensional materials

description: Thin film ferroelectrics have been pursued for capacitive and nonvolatile
 memory devices. They rely on polarizations that are oriented in an
 out-of-plane direction to facilitate integration and addressability with
 CMOS architectures. The internal depolarization field, however, formed by
 surface charges can suppress the out-of-plane polarization in ultrathin
 ferroelectric films that could otherwise exhibit lower coercive fields and
 operate with lower power. Here we unveil stabilization of a polar
 longitudinal optical (LO) mode in the n=2 Ruddlesden–Popper
 family that produces out-of-plane ferroelectricity, persists under
 open-circuit boundary conditions, and is distinct from
 hyperferroelectricity. Our first-principles calculations show the
 stabilization of the LO mode is ubiquitous in chalcogenides and halides
 and relies on anharmonic trilinear mode coupling. We further show that the
 out-of-plane ferroelectricity can be predicted with a crystallographic
 tolerance factor, and we use these insights to design a room-temperature
 multiferroic with strong magnetoelectric coupling suitable for
 magneto-electric spin-orbit transistors.  
description: #
 Out-of-plane-ferroelectricity-and-robust-magnetoelectricity-in-quasi-two-dimensional-materials [https://doi.org/10.5061/dryad.59zw3r2dr](https://doi.org/10.5061/dryad.59zw3r2dr) ## Description of the data and file structure *I*4<sub>1</sub>*cd* structure of SrTb<sub>2</sub>Fe<sub>2</sub>S<sub>7</sub>, *I*4<sub>1</sub>*cd* structure of BaLa<sub>2</sub>In<sub>2</sub>S<sub>7</sub> and *Pc* structure of KAg<sub>2</sub>Mn<sub>2</sub>Cl<sub>7</sub>.
DOI: 10.5061/dryad.rn8pk0pj2
title: Data from: Host egg volatiles are involved in brood parasitism in predatory mites

description: Recently, we reported brood parasitism in the tiny predatory
 mite Neoseiulus californicus (Acari: Phytoseiidae); adult females
 of this species prefer to add their eggs to a cluster of eggs of another
 predatory mite species, Gynaeseius liturivorus (Acari: Phytoseiidae),
 which guards its own eggs against egg predators. Here, we investigated the
 cues used by the blind N. californicus to detect eggs of G.
 liturivorus. We show that N. californicus locates oviposition
 sites of G. liturivorus using volatiles emanating from eggs of the latter
 species. Adult female G. liturivorus spent more time guarding
 oviposition sites that contain more eggs, which resulted in a higher per
 capita survival of the eggs. We therefore hypothesized that N.
 californicus would prefer oviposition sites with more G. liturivorus eggs.
 Indeed, N. californicus preferably laid their egg at oviposition
 sites containing more than six G. liturivorus eggs, which corresponds to
 the average number laid by a female G. liturivorus during one day. Our
 results suggest that N. californicus uses egg volatiles to
 localize oviposition sites of G. liturivorus, where the eggs of the former
 are effectively protected against egg predators.
description: 1\. **Title of dataset**: Data from: Host egg volatiles are involved in
 brood parasitism in predatory mites 2\. **Author information**:
 **Corresponding author** Name: Yasuyuki Choh Institutuion: Chiba
 University email:
 [choh@faculty.chiba-u.jp](mailto:choh@faculty.chiba-u.jp) **Co-author 1**
 Name: Arne Janssen Institution: University of Amsterdam 3\. **Date of data
 collection**: April-October 2022 4\. **File list** Brood parasitism cues
 data 5\. **Sharing/access information** Links to publications that cite or
 use the data: Choh, Y., Janssen, A. "Host egg volatiles are involved
 in brood parasitism in predatory mites" Ecological Entomology.
 [https://doi.org/10.1111/een.13376](https://doi.org/10.1111/een.13376) 6\.
 **File overview** Each data sheet is associated with data in the above
 paper. Data on residence time of hosts on oviposition sites and predation
 on host eggs by thrips larvae are shown in the sheets residence time and
 egg predation respectively. **Data Sheet of Fig. 1** "treat"
 means two types of odour source (i.e., the presence and the absence of egg
 odour). "eggs" means the number of parasite eggs laid on sites
 with either of two odour sources. **Data Sheet of Fig. 2**
 "bars" means the order of choice tests shown in Fig. 2 of the
 paper from the top. "treat" means the number of host eggs on
 each oviposition site, and "eggs" means the same as Fig. 1.
 **Data Sheet of residence** "treat" means the number of host
 eggs on oviposition sites. "time" means residence time when host
 females remained on oviposition sites **Data Sheet of egg predation**
 "treat" means the number of host eggs on oviposition sites.
 "eggs" means the number of eggs killed by thrips larvae.
DOI: 10.57745/uuo7bh
title: Plant species distribution - Lithuania

description: High-resolution mapping of plant species using the GeoPl@ntNet tool: https://geo.plantnet.org/eco2adapt/ This interactive tool allows the exploration of distributions of species and biodiversity indicators produced by training a DeepSDM model, with predictions at a resolution of 50m per pixel.
DOI: 10.5061/dryad.8sf7m0cvn
title: Importance of mega-environments in evaluation and identification of climate resilient maize hybrids (Zea mays L.)

description: Multi-location experiments on maize were conducted from 2016 to 2019 at
 ten locations distributed across two agro-climatic zones (ACZ) i.e., ACZ-3
 and ACZ-8 of Karnataka, India. Individual analysis of variance for each
 location-year combination showed significant differences among the
 hybrids; similarly, combined analysis showed a higher proportion of GE
 interaction variance than due to genotype. Mega-environments were
 identified using biplot approaches such as AMMI, GGE, and WAASB
 methodologies for the years 2016 to 2019. The BLUP method revealed a high
 correlation between grain yield and stability indices ranging from 0.67 to
 1.0. Considering all three methods together, the three location pairs
 Arabhavi-Belavatagi, Bailhongal-Belavatagi, and Hagari-Sirguppa had three
 occurrences in the same mega-environment with a value of 0.67, and these
 location combinations consistently produced winning genotypes. Among the
 common winning genotypes identified, it was G7 during 2016 and 2017 and
 G10 during 2018 and 2019, based on WAASBY. The likelihood of
 Arabhavi-Nippani, Hagari-Mudhol, and Dharwad-Hagari occurring in the same
 mega-environment is minimal because they did not share the same winning
 genotype, with the exception of a small number of events. Despite being in
 the same agro-climatic zone, Arabhavi, Hagari, and Mudhol rarely had a
 winning genotype in common. An agro-climatic zone is grouped based on
 climatic and soil conditions which doesn’t consider GE interaction of
 cultivars thus, releasing the cultivars for commercial cultivation
 considering mega environments pattern would enhance the yield for the
 given target region.
description: # Importance of mega-environments in evaluation and identification of
 climate resilient maize hybrids (*Zea mays L*.)
 [https://doi.org/10.5061/dryad.8sf7m0cvn](https://doi.org/10.5061/dryad.8sf7m0cvn) The data is related to paper "Importance of mega-environments in evaluation and identification of climate resilient maize hybrids (*Zea mays L*.)". The paper explores the mega environment pattern of Northern Karnataka region. ## Description of the data and file structure The data contains four columns, YEAR: contains year of experiment. The experiment was conducted from year 2016 to 2019. ENV: environment, the locations of experiment for the given year. The number of locations vary year to year GEN: genotypes, maize hybrids involved in experiments. The number of hybrids vary year to year REP: replication, three replications for all the experiments GY: grain yield, unit is Quintals/Hectare ##
DOI: 10.5061/dryad.qrfj6q5ng
title: MATLAB code to simulate the effects of combination of control strategies on the transmission of diphtheria

description: This research introduced an extensive mathematical model to capture the
 dynamics of diphtheria transmission. The study examined the interaction of
 five control measures viz: routine diphtheria vaccination, often
 administered with tetanus and pertussis vaccines; interventions for
 symptomatic to isolated treatment transitions; collaborative efforts
 addressing asymptomatic to home quarantine transitions; surveillance
 measures for home quarantine to isolated treatment transitions; and
 vigilance to detect cases in individuals exposed to symptomatic cases. We
 established the epidemiological viability of the model by proving, among
 others, its positivity, equilibrium under endemic conditions, equilibrium
 in the absence of disease, global and local stability and boundedness.
 Also the sensitivity analysis of the model highlighted the importance of
 the important variables in influencing disease occurrence and spread. In
 addition, the control measures significantly impact virus transmission
 dynamics, and results from simulations demonstrated that combination of
 these control strategies effectively flattened the curve of diphtheria
 transmission. These findings provided healthcare professionals and
 policymakers with valuable insights into crucial measures for eradicating
 diphtheria from the population.
description: # MATLAB code to simulate the effects of the combination of control
 strategies on the transmission of Diphtheria
 [https://doi.org/10.5061/dryad.qrfj6q5ng](https://doi.org/10.5061/dryad.qrfj6q5ng) ## Description of the data c=200;                 %c=beta  -recruitment of individuals into the susceptible population d=0.000097;            %d=landa -transmission rate e=0.7;                 %e=gamma -modification parameter for the transmission rate f=0.002;               %f=meu -natural mortality a=0.55;                         %proportion of symptomatic individuals g=0.95;                %g=phi -The rate of exposed individuals to symptomatic h=0.0054;              %h=delta -diphtheria mortality rate k1=0.9;                %tau1 -routine vaccination k2=0.9;                %tau2 -effort of health facilities in the transition of symptomatic to isolated treatment k3=0.9;                %tau3 -effort of health facilities in the transition of asymptomatic to home quarantine k4=0.9;                %tau4 -effort of health facilities in the transition of home quarantine to isolated treatment k5=0.99;               %tau5 -effort of health facilities in the transition of exposed to symptomatic i=2.1429;              %i=sigma2 -rate of home-quarantine individuals to recovered class b=0.55;                %proportion of isolated individuals j=2.1429;              %j=sigma1-rate of home-quarantine individuals to recovered class plotchoice=8;         %change plot choice ## Sharing/Access information The codes were written by the authors to simulate the outcome of all parameters. ## Code/Software MATLAB code is run by MATLAB software.
DOI: 10.15468/dl.bjwfkc
title: Occurrence Download

description: A dataset containing 8527 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Global Register of Introduced and Invasive Species - United States (Contiguous) (ver.2.0, 2022)"
 ]
}

 The dataset includes 8527 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003661-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.