cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15065160
title: Dataset of "Ionic Liquid Electrolyte Suppresses Deep Sodiation in Nb4P2S21/Mo2CTx Enabling Transition from Mixed-Voltage to Pure High-Voltage Operation for Sodium-Ion Battery Cathodes"

description: Elemental sulfur has garnered significant attention due to its low cost and high theoretical capacity; however, its reliance on ether electrolytes leads to the formation of soluble polysulfides, thereby limiting its application. Sulfur-rich transition metal polysulfides demonstrate potential as sulfur-equivalent cathodes to replace conventional sulfur in alkali metal-sulfur batteries; however, adequate research in this area remains unrevealed. In this study, we investigate the Nb4P2S21 in carbonate, ether, and ionic liquid electrolytes for sodium-ion battery testing.

The material exhibits a high discharge capacity exceeding 1000 mAh/g and a prolonged discharge plateau at low potentials in both ether and carbonate electrolytes, similar to other phosphorus sulfide anodes. When switching to the NaTFSI/[EMIM]TFSI ionic liquid electrolyte, 96.3% of the discharge capacity in the 0–3 V range is retained above 0.8 V, with no redox peaks observed at lower potentials. The incorporation of Mo2CTx MXene into the material further reduces electrochemical polarization and enhances cycle stability. 

During 100 cycles, a self-activation phenomenon occurs, resulting in a maximum capacity of 384 mAh/g, while the median voltage remains above 1.5 V, predominantly governed by a pair of reversible redox peaks. XPS and HRTEM analyses of post-cycled material confirm the structural and compositional stability of the material during cycling. This study advances the understanding of sulfur-rich materials in sodium-ion batteries across various electrolytes, particularly ionic liquids.
DOI: 10.5281/zenodo.15049078
title: A Spatio-Temporal Model of Embolism Propagation in Leaf Vein Networks

description: Overview

This dataset contains the image dat, processed data, and code used in the paper "A Spatio-Temporal Model of Embolism Propagation in Leaf Vein Networks", authored by Diane Lu, Chris M. Smith-Martin, Robert Muscarella, María Uriarte, and Tian Zheng, currently accepted by AoB PLANTS, 2025, [DOI link].

Citation

If you use this code or data, please cite our paper:  Diane Lu, Chris M. Smith-Martin, Robert Muscarella, María Uriarte, Tian Zheng, A Spatio-Temporal Model of Embolism Propagation in Leaf Vein Networks, AoB PLANTS, 2025,  [DOI link].

Dataset Structure





Each zip file contains multiple folders, each representing a leaf sample of the same species (e.g., drygla.zip includes drygla2_leaf,  drygla3.2_leaf,  drygla4_leaf,  drygla5_leaf, drygla7_leaf, drygla8_leaf, drygla9_leaf):





speciesIndex_leaf: Folder for each individual leaf sample (e.g., drygla4_leaf)





raw image files (.png or .jpg): Raw image files, with timestamp as the filename




bw_labels.csv: A large CSV file showing each pixel's vein segment index (i.e., ori_region)




bw_labels_img.png: A preview of bw_labels.csv, where the color represents ori_region




real_data.RData: Survival data processed from the raw image files, can be used directly for the code.

The survival data (real_data.RData) contains the following elements:



X is a data frame with 5 cols: ori_region, v, delta,t, new_region. Note nrow(X)= total number of vein segments=max(X$new_region).



ori_region: the vein segment index used for plotting (overlaying vein segments have the same ori_region)

v: vein thickness

delta: event indicator. 1 if the vein segment is embolized during (T1,T2). 0 else

t: if delta==1 (observed emb event), t = the obs emb wp (-0.01MPa). Else (censored), t=NA.

new_region: the region index where overlaying vein segments would receive different indexes.



T1, T2: observation period

E_new: Adjacency matrix with respect to X$new_region (i.e. row index of X). Note that overlaying vein segments are considered not connected here.







main.R: an example code for spatial survival model using real_data.RData.


Code Usage

To get started, download drygla.zip and run the code (main.R) on the survival data (real_data.RData) to fit a spatial survival model for drygla4_leaf.

To fit survival models for all the data, download all the zip files, uncomment the for-loop in main.R, and then run the code (main.R).
DOI: 10.5281/zenodo.15049079
title: A Spatio-Temporal Model of Embolism Propagation in Leaf Vein Networks

description: Overview

This dataset contains the image dat, processed data, and code used in the paper "A Spatio-Temporal Model of Embolism Propagation in Leaf Vein Networks", authored by Diane Lu, Chris M. Smith-Martin, Robert Muscarella, María Uriarte, and Tian Zheng, currently accepted by AoB PLANTS, 2025, [DOI link].

Citation

If you use this code or data, please cite our paper:  Diane Lu, Chris M. Smith-Martin, Robert Muscarella, María Uriarte, Tian Zheng, A Spatio-Temporal Model of Embolism Propagation in Leaf Vein Networks, AoB PLANTS, 2025,  [DOI link].

Dataset Structure





Each zip file contains multiple folders, each representing a leaf sample of the same species (e.g., drygla.zip includes drygla2_leaf,  drygla3.2_leaf,  drygla4_leaf,  drygla5_leaf, drygla7_leaf, drygla8_leaf, drygla9_leaf):





speciesIndex_leaf: Folder for each individual leaf sample (e.g., drygla4_leaf)





raw image files (.png or .jpg): Raw image files, with timestamp as the filename




bw_labels.csv: A large CSV file showing each pixel's vein segment index (i.e., ori_region)




bw_labels_img.png: A preview of bw_labels.csv, where the color represents ori_region




real_data.RData: Survival data processed from the raw image files, can be used directly for the code.

The survival data (real_data.RData) contains the following elements:



X is a data frame with 5 cols: ori_region, v, delta,t, new_region. Note nrow(X)= total number of vein segments=max(X$new_region).



ori_region: the vein segment index used for plotting (overlaying vein segments have the same ori_region)

v: vein thickness

delta: event indicator. 1 if the vein segment is embolized during (T1,T2). 0 else

t: if delta==1 (observed emb event), t = the obs emb wp (-0.01MPa). Else (censored), t=NA.

new_region: the region index where overlaying vein segments would receive different indexes.



T1, T2: observation period

E_new: Adjacency matrix with respect to X$new_region (i.e. row index of X). Note that overlaying vein segments are considered not connected here.







main.R: an example code for spatial survival model using real_data.RData.


Code Usage

To get started, download drygla.zip and run the code (main.R) on the survival data (real_data.RData) to fit a spatial survival model for drygla4_leaf.

To fit survival models for all the data, download all the zip files, uncomment the for-loop in main.R, and then run the code (main.R).
DOI: 10.15468/dl.dmbrn8
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Locality is Ozaukee County (General)",
 "StateProvince is Wisconsin"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020632-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8yjgpu
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diadegma blackburni (Cameron, 1883)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020631-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2v7mv
title: Occurrence Download

description: A dataset containing 8865 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylophilus thoracicus Temminck, 1822"
 ]
}

 The dataset includes 8865 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020634-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cry794
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Galium pusillum subsp. magellense (Ten.) Nyman, Galium magellense Ten.)",
 "Year 1960-2025"
 ]
}

 The dataset includes 55 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020635-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5y8vw
title: Occurrence Download

description: A dataset containing 20374 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylophilus poicilotis Temminck, 1822"
 ]
}

 The dataset includes 20374 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020633-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9pzvr24
title: Morphology data for Ciscoes (Coregonus, subgenus Leucichthys) collected in the Great Lakes Cisco Project

description: This dataset contains morphological information for Ciscoes (Coregonus, subgenus Leucichthys) collected from the Great Lakes as part of the &quot;Great Lakes Cisco Project&quot;. The project was initiated in 1950 by Stanford H. Smith, who was a Fishery Research Biologist in the then U.S. Bureau of Commercial Fisheries. The dataset includes 16 morphometrics (linear measurements) and one meristic (count of gill rakers) for Ciscoes, together with biological data (i.e., length, weight, sex, and maturity), sampling location, and date of collection. Consult Koelz (1929) and the &quot;Morphology of Ciscoes&quot; section in Eshenroder et al. (2016) for descriptions of how measurements and counts were made in the then &quot;Ann Arbor Laboratory&quot; of U.S. Bureau of Commercial Fisheries.  References  Eshenroder, R. L., P. Vecsei, N. E. Mandrak, D. L. Yule, O. T. Gorman, T. C. Pratt, D. B. Bunnell, and A. M. Muir. 2016. Ciscoes (Coregonus, subgenus Leucichthys) of the Laurentian Great Lakes and Lake Nipigon. Great Lakes Fishery Commission Miscellaneous Publication 2016-1, Ann Arbor, Michigan.  Koelz, W. N. 1929. Coregonid fishes of the Great Lakes. Bulletin of the United States Bureau of Fisheries, 43(2), 297?643.
DOI: 10.15468/dl.fghz4z
title: Occurrence Download

description: A dataset containing 2025 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pterocarpus santalinoides L'Hér. ex DC."
 ]
}

 The dataset includes 2025 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020636-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udupyu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vanellus vanellus (Linnaeus, 1758))",
 "Year is not null",
 "Year is one of (2023)",
 "HasCoordinate is TRUE",
 "DecimalLatitude is greater than or equal to 48.36815714509501",
 "DecimalLatitude is less than or equal to 48.528705851218234",
 "DecimalLongitude is greater than or equal to 9.262312305881835",
 "DecimalLongitude is less than or equal to 9.574177348561932",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020639-250310093411724/datasets/export for details.
DOI: 10.5281/zenodo.15065051
title: Ciona tail regression_genotype_Ano5 (KH.C8.274)_video5 (part1)

description: Video that was collected using Ciona Tracker 2.0 as part of Liang et al 2025. Animals included in this video are Ano5 mutants used in CRISPR/Cas9 experiments addressing the role of Ano5 and Ano6 in Ciona sensory perception.
DOI: 10.5281/zenodo.15065052
title: Ciona tail regression_genotype_Ano5 (KH.C8.274)_video5 (part1)

description: Video that was collected using Ciona Tracker 2.0 as part of Liang et al 2025. Animals included in this video are Ano5 mutants used in CRISPR/Cas9 experiments addressing the role of Ano5 and Ano6 in Ciona sensory perception.
DOI: 10.15468/dl.78bedp
title: Occurrence Download

description: A dataset containing 559105 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Solanum dulcamara L."
 ]
}

 The dataset includes 559105 records from 2584 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020625-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111130159
title: 4Q(?)Fragment with Text from Commentary on Genesis A, DSS F.130

description: [Text Description:] Fragments from Commentary on Genesis ❧ [Text or Publication Number Note:] DSS F.130; DSS F.CommGen; Schoyen MS 5095/7 ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 4 tiny pieces of parchment, 3 w/writing: 2.0x1.0, 0.7x1.5, 0.5x1.5cm, .9x1.2cm; grey parchment, thin ❧ [Physical Object Note:] Letter hight 2.5mm, line spacing 7.5mm ❧ [Physical Object Note:] Original assemblage was with a leather cord, Schoyen MS 5095/6
DOI: 10.15468/dl.2p5dfu
title: Occurrence Download

description: A dataset containing 4086 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-163.94099 -20.49138,-19.05901 -20.49138,-19.05901 37.49138,-163.94099 37.49138,-163.94099 -20.49138))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Agalychnis Cope, 1864"
 ]
}

 The dataset includes 4086 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076358-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dw1t12
title: Occurrence Download

description: A dataset containing 60677 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is FLOR - Herbário do Departamento de Botânica da Universidade Federal de Santa Catarina"
 ]
}

 The dataset includes 60677 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005988-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gy4cy4
title: Occurrence Download

description: A dataset containing 4733 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pisolithus arhizus (Scop.) Rauschert)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4733 records from 172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064149-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.khajwf
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ichthyomys pittieri Handley & Mondolfi, 1963"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011097-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111130032
title: 11Q(?)Eschatological Fragment ar, DSS F.131

description: [Text Description:] Fragment of eschatological text ❧ [Text or Publication Number Note:] DSS F.131; DSS F.Eschat; Schoyen MS 4612/3 ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 2.2cm, thickness .33±.05mm; thin, prepared on both sides; light to medium brown; mineral deposits, product of bat guano ❧ [Physical Object Note:] Line spacing c. 6mm; remains of three lines
DOI: 10.15468/dl.pucojg
title: Occurrence Download

description: A dataset containing 137489 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Xeno-canto - Bird sounds from around the world"
 ]
}

 The dataset includes 137489 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020401-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2deu2d
title: Occurrence Download

description: A dataset containing 2395441 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Thailand"
 ]
}

 The dataset includes 2395441 records from 1173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076372-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ri6oo1
title: Occurrence Download

description: A dataset containing 12147 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Danish Ants (Formicidae)"
 ]
}

 The dataset includes 12147 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005972-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111302927
title: Exodus 23

description: [Text Description:] Fragment Exodus 23:8-10 ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] Parchment fragment ❧
DOI: 10.15468/dl.qyndxf
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Buglossoides arvensis subsp. sibthorpianum (Griseb.) R.Fern."
 ]
}

 The dataset includes 58 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020462-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111302759
title: Deuteronomy 9-10

description: [Text Description:] Fragment of Deuteronomy 9:25-10:1 ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] Parchment fragment ❧
DOI: 10.15468/dl.qfct1s
title: Occurrence Download

description: A dataset containing 967527 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Anas americana J.F.Gmelin, 1789"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 967527 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011094-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nyj5fk
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plagiopteron suaveolens Griff."
 ]
}

 The dataset includes 57 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076414-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111302748
title: Deuteronomy 9-10

description: [Text Description:] Fragment of Deuteronomy 9:25-10:1 ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] Parchment fragment ❧
DOI: 10.15468/dl.ifjiuz
title: Occurrence Download

description: A dataset containing 6185 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macroscelididae"
 ]
}

 The dataset includes 6185 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020463-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gn8c8w
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Suillus luteus (L.) Roussel"
 ]
}

 The dataset includes 27 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174544-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2stae
title: Occurrence Download

description: A dataset containing 427 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myiothlypis basilica (Todd, 1913)"
 ]
}

 The dataset includes 427 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028756-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkuqdx
title: Occurrence Download

description: A dataset containing 624 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Grandiphyllum divaricatum (Lindl.) Docha Neto"
 ]
}

 The dataset includes 624 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007400-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dx9zxe
title: Occurrence Download

description: A dataset containing 414 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Araucaria montana Brongn. & Gris"
 ]
}

 The dataset includes 414 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028756-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oexjj8
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes dentatus Theobald, 1904"
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000972-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.333z22
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Freycinetia vieillardii Martelli"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010026-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.