cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.59t11/5
title: Supplementary video 1_data 1 time lapse_POD1_canyon axis

description: Time-lapse video assembled with data from the 675 kHz Kongsberg imaging rotary sonars. Dataset 1: (Nov 19-29, 2010 - Canyon Axis). Please refer to the ‘Readme’ file, or to the ‘Supplementary Materials’ file available through Nature Scientific Reports, for complete description of the sampling protocol.
DOI: 10.5061/dryad.59t11/6
title: Supplementary video 2_data 1 time lapse_POD3_canyon wall

description: Time-lapse video assembled with data from the 675 kHz Kongsberg imaging rotary sonars. Dataset 1: (Nov 15-27, 2010 - Canyon Wall). Please refer to the ‘Readme’ file, or to the ‘Supplementary Materials’ file available through Nature Scientific Reports, for complete description of the sampling protocol.
DOI: 10.5061/dryad.59t11/7
title: Supplementary video 3_data 2 time lapse_POD1_canyon axis

description: Time-lapse video assembled with data from the 675 kHz Kongsberg imaging rotary sonars. Dataset 2: (Feb 07-18, 2011 - Canyon Axis). Please refer to the ‘Readme’ file, or to the ‘Supplementary Materials’ file available through Nature Scientific Reports, for complete description of the sampling protocol.
DOI: 10.5061/dryad.59t11/8
title: Supplementary video 4_data 2 time lapse_POD3_canyon wall

description: Time-lapse video assembled with data from the 675 kHz Kongsberg imaging rotary sonars. Dataset 2: (Feb 07-19, 2011 - Canyon Wall). Please refer to the ‘Readme’ file, or to the ‘Supplementary Materials’ file available through Nature Scientific Reports, for complete description of the sampling protocol.
DOI: 10.5061/dryad.5fg20/1
title: Raw_data_Doubell et al. JEB

description: raw summary respirometry and sound recordings per individual
DOI: 10.5061/dryad.5m6t4/1
title: 454-input - primersJMHC
DOI: 10.5061/dryad.5m6t4/2
title: 454-input - R1 - 1.TCA.454Reads
DOI: 10.5061/dryad.5m6t4/3
title: 454-input - R1 - 2.TCA.454Reads
DOI: 10.5061/dryad.5m6t4/4
title: 454-input - R1 - Primertags
DOI: 10.5061/dryad.5m6t4/5
title: 454-input - R2 - 1.TCA.454Reads
DOI: 10.5061/dryad.5m6t4/6
title: 454-input - R2 - 2.TCA.454Reads
DOI: 10.5061/dryad.5m6t4/7
title: 454-input - R2 - Primertags
DOI: 10.5061/dryad.5m6t4/8
title: 454-output - R1 output
DOI: 10.5061/dryad.6qd19/1
title: Camera Data

description: Image analysis data from wildlife cameras
DOI: 10.5061/dryad.708k0/1
title: Voucher Table

description: Locality and date of collection data for vouchered specimens used in this study.
DOI: 10.5061/dryad.708k0/2
title: SpectrophotometryData_Dryad

description: Zip file containing raw output of OceanOptics spectrophotometer for all individuals included in this study.
DOI: 10.5061/dryad.708k0/3
title: SpecProcessing_v2

description: R script showing line-by-line code used to analyze data included in this study.
DOI: 10.5061/dryad.b7g24/1
title: Wood Frog eDNA Survey Results

description: 1 liter water samples collected around Fairbanks/North Pole for eDNA analysis. Filters were cut in half and DNA isolated via phenol-chloroform from one half. Other half is archived. qPCR (SYBR Green) conducted for detection of wood frog cytB (Rasy_00)..
DOI: 10.5061/dryad.c0g0p/1
title: Heart_OpticalSignalProcessing

description: Folder contains for each movie its digitized optical signals and the code to analyze them, each in a separate folder.
DOI: 10.5061/dryad.c0g0p/2
title: HeartAnalysis_VideoProcessingDummy

description: Data file contains 13 movies and the code to analyze them.
DOI: 10.5061/dryad.c0g0p/3
title: CPGtoMotorPattern_synaptics

description: Electrophysiologcal recordings to determine the synaptic strength between interneurons and motor neurons
DOI: 10.5061/dryad.c0g0p/4
title: CPG&MotorPattern_data&codetxt

description: Extracellular recordings from interneurons and motor neurons to determine burst and phase characteristics.
DOI: 10.5061/dryad.c0g0p/5
title: Variances; data source

description: Matlab code and *txt files to calculate the cycle-to-cycle variances, the population variances, the repetition variances, and the bilateral variances as well as the code for bootstrapping and scrambling
DOI: 10.5061/dryad.c8b66/1
title: Toxic nectar r1

description: Toxic nectar
DOI: 10.5061/dryad.cn1c3/1
title: Ison&WeisDataFiles

description: This folder includes 6 data files, 3 metadata files, and 1 R script.
DOI: 10.5061/dryad.dq40b/1
title: Data from all samples

description: Data from all samples used in the study.
DOI: 10.5061/dryad.ds68r/1
title: fathers

description: Sperm traits (number & viability), body weight (g) of male crickets (fathers) exposed to High (H) or Low (L) temperature since development (DEV) or since adulthood (AD)
DOI: 10.5061/dryad.ds68r/2
title: offspring hatching success

description: Hatching success of offspring generated by male crickets (fathers - see main text) that were exposed to High (H) or Low (L) temperature since development (DEV) or since adulthood (AD)
DOI: 10.5061/dryad.ds68r/3
title: offspring survival

description: Survival (at 7 weeks) for offspring generated by male crickets (fathers - see main text) exposed to High (H) or Low (L) temperature since development (DEV) or since adulthood (AD)
DOI: 10.5061/dryad.ds68r/4
title: offspring

description: Sperm traits (number & viability), body weight (g) of male crickets (offspring - see main text) exposed to High (H) or Low (L) temperature. Also relative (_rel) values were calculated for those traits (see text for further details).
DOI: 10.5061/dryad.fc1m8/3
title: Survival data

description: Each line represents an aphid; day column represents the experimental day the aphid died.
DOI: 10.5061/dryad.fc1m8/4
title: Microsatellite data

description: Microsatellite lengths (bp) are indicated for three A. nerii genotypes at six loci.
DOI: 10.5061/dryad.fc1m8/5
title: DESEQ2 for A. nerii transcriptome

description: File is output of DESEQ2 showing differential expression for all A. nerii transcripts. Ax3 = mean expression on A. incarnata; Bx3 = mean expression on G. physocarpus.
DOI: 10.5061/dryad.fc1m8/6
title: A. nerii transcriptome sequences

description: Assembled A. nerii nucleotide sequences (APHNE).
DOI: 10.5061/dryad.fv584/8
title: Pathogen_Loads

description: qPCR data
DOI: 10.5061/dryad.jk4r6/1
title: C++ simulation program

description: Simulates a population of N diploid individuals undergoing partial selfing, under Gaussian stabilizing selection on n phenotypic traits coded by biallelic loci, equally spaced along a single linear chromosome.
DOI: 10.5061/dryad.k643q/1
title: Microsatellite genotypes

description: Microsatellite genotypes for 14 Lessonia corrugata populations. Please contact authors for translation of population codes
DOI: 10.5061/dryad.k643q/2
title: R_code_Lessonia_corrugata

description: R code to run Linear Mixed Effect models of seascape genetic variation in Lessonia corrugata
DOI: 10.5061/dryad.k643q/3
title: Distance proportions-NA_CB

description: Data for seascape genetic analysis in Lessonia corrugata (all site comparisons)
DOI: 10.5061/dryad.k643q/4
title: Distance proportions-NA_CB_shoreNEW

description: Data for seascape genetic analysis in Lessonia corrugata (site comparisons within shores)
DOI: 10.5061/dryad.kq484/1
title: Red Maple 2013

description: Data for experiment 1 described in the manuscript. Contains population data for ants, caterpillars in response to treatment effects from field season 2013 on the tree species Acer rubrum.
DOI: 10.5061/dryad.kq484/2
title: RCombined 2014 and 2015

description: Data for Experiment 2 as described in manuscript. Contains insect population, community, and leaf damage on Carya. Data is collated across both 2014 and 2015 field seasons.
DOI: 10.5061/dryad.kq484/3
title: Catsize2014and2015

description: Supplemental data with identities of caterpillar species and reported body sizes from field season 2014 and 2015 on Carya spp. Used for figure 5 in manuscript.
DOI: 10.5061/dryad.mc7pd/1
title: DATA_TASK_3DMOV_HP_CSF_WD

description: Briefly, data comes from five functional runs consisting of a resting-state measurement (eyes closed), four individual task measurements including a visual n-back (n=2) task (Kirchner, 1958), the Eriksen flanker task (Eriksen & Eriksen, 1974), a mental rotation task (Shepard & Metzler, 1971), and a verbal odd-man-out task (Flowers & Robertson, 1985). All runs comprise 192 data points with tasks being continuously performed during this period. For the n-back and flanker task, stimuli were presented at a rate of 0.5 Hz; for the mental rotation and odd-man out tasks they were presented at a rate of 0.25 Hz. Task sequence was counterbalanced across participants with the exception that the resting state functional run was always acquired first to prevent carry-over effects (Grigg & Grady, 2010). The data were acquired using a 3 Tesla Siemens Prisma Fit (upgraded Tim Trio) scanner and a 64-channel head coil. Initial preprocessing was performed using BrainVoyager QX (v2.6; Brain Innovation, Maastricht, the Netherlands). This includes slice scan time correction, 3D-motion correction, high-pass filtering with a frequency cutoff of .01 Hz, and registration of functional and anatomical images. Subsequently, using MATLAB (2013a, The MathWorks,Natick, MA), signals were cleaned by performing wavelet despiking (Patel & Bullmore, 2015) and regressing out a global noise signal given by the first principal component of signals observed within the cerebrospinal fluid of the ventricles. Next, voxels were uniquely assigned to one of the 68 cortical ROIs specified by the DK atlas and an average BOLD time-series was computed for each region as the mean time-series over all voxels of that region.
DOI: 10.5061/dryad.n8147/2
title: DAPC and statistics script

description: R script to compute population statistics and DAPC analyses
DOI: 10.5061/dryad.n8147/3
title: BEAST *.xml files

description: *.xml-formatted files for L. globosum, L. manubriatum, and all specimens
DOI: 10.5061/dryad.n8147/4
title: Files for DAPC and population statistics

description: Folder of *.phy, STRUCTURE and tab delimited files for F-statistics calculation and DAPC analyses in R
DOI: 10.5061/dryad.n8147/5
title: gbs2ploidy files

description: Edited heterozygous allele depth files and FACS-assigned ploidy for all specimens to use in gbs2ploidy analyses in R.
DOI: 10.5061/dryad.p6n8f/1
title: GP Interviews 14.10.17
DOI: 10.5061/dryad.qp5g7/1
title: Anticipatory flexibility manuscript raw data

description: Raw data collected from experiments exploring the effects of different rearing conditions (number of larvae and size of container) on adult development in the gum leaf skeletoniser moth, Uraba lugens.
DOI: 10.5061/dryad.s522m/3
title: Data_Island_Characteristics

description: Data on island characteristics (island area, isolation, elevation and climate) of 74 tropical and subtropical oceanic islands within 20 archipelagos worldwide
DOI: 10.5061/dryad.s81k3/1
title: Raw Data

description: Includes data for multi-species analysis and for activity overlap analysis
DOI: 10.5061/dryad.s81k3/2
title: R Code

description: R Code for multi-species analysis (adapted from Rota et al. 2016. A multi-species occupancy model for two or more interacting species. Methods in Ecology and Evolution. 7: 1164-1173) and for activity overlap analysis.
DOI: 10.5061/dryad.td470/1
title: Oxidative stress defense in males of Hetaerina americana

description: Each objective in the data file corresponds with a specific objective in the paper.
DOI: 10.5061/dryad.v49vd/1
title: Fig_1_ln_weight_vs_age

description: Underlying data for Fig. 1 regarding weight of M. leidyi (as ln mgC) versus age. Check publication for details.
DOI: 10.5061/dryad.v49vd/2
title: Fig_1_SEP_vs_age

description: Underlying data for Fig. 1 regarding specific egg production of M. leidyi (per day) versus age. Check publication for details.
DOI: 10.5061/dryad.v49vd/3
title: Fig.2_life_time_reproductive_success_population_growth_rate

description: Underlying data for Fig. 2 regarding life time reproductive success and population growth rate of M. leidyi versus maturation size (mgC). Check publication for details.
DOI: 10.5061/dryad.vb047/1
title: Sequences of all MATE proteins described in manuscript

description: Data contains sequences of All 101 MATE proteins from populus, arabidpsis, rice and other 13 plant species.
DOI: 10.5061/dryad.vb047/2
title: Figure S1

description: Expression profiles of 10 PtrMATE genes under Al treatment.
DOI: 10.5061/dryad.vb047/3
title: Figure S2

description: Multiple sequence alignment of PtrMATE1, PtrMATE2 and AtMATE.
DOI: 10.5061/dryad.vb047/4
title: Figure S3

description: Time course of PtrMATE2 expression in the roots of Populus in response to Al or La treatment.
DOI: 10.5061/dryad.270h8/1
title: supporting data
DOI: 10.5061/dryad.322q2/1
title: Selvagens_Madeira_fish_data

description: Collected in the field, Excel, abbreviations in Readme file
DOI: 10.5061/dryad.322q2/2
title: Selvagens_Madeira_benthic_data

description: collected in the field, Excel, abbreviations in Readme file
DOI: 10.5061/dryad.322q2/3
title: Selvagens_Madeira_mobile_inverts

description: collected in the field, Excel, abbreviations in Readme file
DOI: 10.5061/dryad.3402n/1
title: SA_Goatpopulation_2017

description: South African indigenous goat population genotyping data.
DOI: 10.5061/dryad.3402n/2
title: R-Codes_Mdladlaet al

description: R codes used for RDA and geographic plot of ADMIXTURE
DOI: 10.5061/dryad.3s57p.1/1.1
title: Land use and drought effects on grassland C dynamics

description: Data were collected from a common garden drought experiment in the Austrian Central Alps using intact vegetation-soil monoliths from an extensively managed meadow and a nearby abandoned grassland. The monoliths were installed in summer 2013 on the meadow site and pre-incubated until drought simulation was started in early summer 2014. The effects of land use on the response of plant C allocation and plant-microbial C transfer to drought and rewetting were studied by conducting two 13C pulse-chase labelling campaigns. A description of all data and abbreviations used in the excel file can be found in tab "0-README".
DOI: 10.5061/dryad.3s57p.2
title: Data from: Land use in mountain grasslands alters drought response and recovery of carbon allocation and plant-microbial interactions
DOI: 10.5061/dryad.3s57p.2/1.2
title: Land use and drought effects on grassland C dynamics

description: Data were collected from a common garden drought experiment in the Austrian Central Alps using intact vegetation-soil monoliths from an extensively managed meadow and a nearby abandoned grassland. The monoliths were installed in summer 2013 on the meadow site and pre-incubated until drought simulation was started in early summer 2014. The effects of land use on the response of plant C allocation and plant-microbial C transfer to drought and rewetting were studied by conducting two 13C pulse-chase labelling campaigns. A description of all data and abbreviations used in the excel file can be found in tab "0-README".
DOI: 10.5061/dryad.41hg1/1
title: Mutamiswa et al_2018_PONE-D-17-38466

description: CTmin= Critical thermal minima, CTmax= Critical thermal maxima, CF LLT= Cotesia flavipes lower lethal temperatures, CF ULT= Cotesia flavipes upper lethal temperatures, CS LLT= Cotesia sesamiae lower lethal temperatures, CS ULT= Cotesia sesamiae upper lethal temperatures, HKDT= heat knowckdown time, CCRT= chill coma recovery time and SCP= supercooling point
DOI: 10.5061/dryad.4fv71/1
title: Phenotypes (clutch size) to calculate heritability
DOI: 10.5061/dryad.4fv71/2
title: Pedigree associated with the phenotype file
DOI: 10.5061/dryad.4fv71/3
title: Manipulated clutch sizes with fledgling weights
DOI: 10.5061/dryad.4hk28/1
title: Report-DLu15-1902_Mod

description: Unfiltered DArTseq genotypes for 1016 L. carponotatus samples.
DOI: 10.5061/dryad.4nt0d/1
title: Meta data on each tagged animal

description: The attached CSV file includes meta data corresponding to the tag setup, deployment and details on the tagged animal.
DOI: 10.5061/dryad.59t11/1
title: Biopump-DataAll

description: Dataset from a monitoring strategy combining satellite (MODIS), surface ocean weather-buoy (http://www.ec.gc.ca), and multi-sensor time-series  data (including video, photographic and acoustic seafloor imaging) of benthic boundary layer processes using Ocean Networks Canada (ONC) seafloor cabled observatory. ONC’s network consists of five subsea observatory nodes linked by 800 kilometers of powered electro-optic cables, looping across the northern Juan de Fuca tectonic plate.
Daily data&fluxes: averaged data from 1 Hz measurements of an internet operated vehicle (IOV) at 870 m water depth in Barkley Canyon, from the NASA MODIS satellite and from a weather buoy near the study site.
Weekly data: calculated weekly averages of our analyses with SeaDAS in comparison with the MODIS, 8-day composites provided by NASA for the same period.
Hourly data: averaged data from 1 Hz measurements of an internet operated vehicle (IOV) at 870 m water depth in Barkley Canyon, from the NASA MODIS satellite and from a weather buoy near the study site.
Fluxes: averaged half hourly data of flow velocity and calculated along- and across canyon fluxes of chlorophyll at 870 m in Barkley Canyon.
SeaDAS: estimations of POC from MODIS satellite-based observations derived via SeaDAS from monthly correlations (December, April) of chlorophyll/POC in surface waters.
Benthos: relative abundances (%) of benthic fauna at the study site and environmental conditions at that time, using sensor data from the IOV.
DOI: 10.5061/dryad.59t11/10
title: Supplementary video 6_data 3 time lpase_POD3_canyon wall

description: Time-lapse video assembled with data from the 675 kHz Kongsberg imaging rotary sonars. Dataset 3: (April 11-22, 2011 - Canyon Wall). Please refer to the ‘Readme’ file, or to the ‘Supplementary Materials’ file available through Nature Scientific Reports, for complete description of the sampling protocol.
DOI: 10.5061/dryad.59t11/11
title: Supplementary video 7_data 4 time lapse_POD1_canyon axis

description: Time-lapse video assembled with data from the 675 kHz Kongsberg imaging rotary sonars. Dataset 4: (May 02-14, 2011 - Canyon Axis). Please refer to the ‘Readme’ file, or to the ‘Supplementary Materials’ file available through Nature Scientific Reports, for complete description of the sampling protocol.
DOI: 10.5061/dryad.59t11/12
title: Supplementary video 8_data 4 time lapse_POD3_canyon wall

description: Time-lapse video assembled with data from the 675 kHz Kongsberg imaging rotary sonars. Dataset 4: (May 02-13, 2011 - Canyon Wall). Please refer to the ‘Readme’ file, or to the ‘Supplementary Materials’ file available through Nature Scientific Reports, for complete description of the sampling protocol.
DOI: 10.5061/dryad.59t11/9
title: Supplementary video 5_data 3 time lapse_POD1_canyon axis

description: Time-lapse video assembled with data from the 675 kHz Kongsberg imaging rotary sonars. Dataset 3: (April 11-23, 2011 - Canyon Axis). Please refer to the ‘Readme’ file, or to the ‘Supplementary Materials’ file available through Nature Scientific Reports, for complete description of the sampling protocol.
DOI: 10.5061/dryad.5m6t4/10
title: 454-output - R2 output
DOI: 10.5061/dryad.5m6t4/11
title: 454-output - R2
DOI: 10.5061/dryad.5m6t4/12
title: Genotype and phenotype table PeerJ 082017
DOI: 10.5061/dryad.5m6t4/13
title: Microsatellite genotype table
DOI: 10.5061/dryad.5m6t4/14
title: Sequence allignment - All 59 functional MHC alleles from this study
DOI: 10.5061/dryad.5m6t4/9
title: 454-output - R1
DOI: 10.5061/dryad.64486/1
title: Tracking classification data

description: The .zip file contains a number of sub folders, simply labeled to indicate the experiment to which their contents correspond. The .txt files contained within these folders each contain classification data produced by our software that relate to a track or part of a track.
DOI: 10.5061/dryad.64486/2
title: Cyprid Tracking and Classification Software

description: The uncompressed .zip file is a directory containing the source files required to compile the tracking and classification software used in this study.  Make executable using the UNIX 'make' command.  The software is optimised for Ubuntu Linux version 12 and requires prior installation of OpenCV.  The authors will provide support and advice for experimental use of the software upon request.
DOI: 10.5061/dryad.6fq63/1
title: Winchell_etal_urbanhabitatuse_JEE17

description: Habitat data from Winchell et al. "Divergent Habitat Use of Two Urban Lizard Species".
DOI: 10.5061/dryad.8395f/1
title: Species

description: List of all scleractinian corals showing reef species, geographic states according to Hughes et al. (2013) and Veron et al. (2009, 2011) (0 = widespread, 1 = endemic to CT, 2 = outside of CT), as well as GenBank and morphological data sources used to reconstruct the phylogeny of Scleractinia (doi:10.1098/rstb.2014.0010) and Acroporidae.
DOI: 10.5061/dryad.8395f/2
title: RSTBtree

description: 1000 posterior trees of Scleractinia based on random resolutions of the supertree (doi:10.1098/rstb.2014.0010); used for GeoSSE analyses.
DOI: 10.5061/dryad.8395f/3
title: Acroporidae input

description: BEAST input file used to generate the Acroporidae molecular trees.
DOI: 10.5061/dryad.8395f/4
title: Acroporidae trees

description: 1000 posterior trees of Acroporidae based on molecular data only; used for GeoSSE analyses.
DOI: 10.5061/dryad.8395f/5
title: GeoSSE

description: R code used to fit GeoSSE model using maximum likelihood and Bayesian Markov chain Monte Carlo.
DOI: 10.5061/dryad.857n9/1
title: H_melpomene_4tissue_Trinity.fasta

description: De novo transcriptome assembly was constructed using Trinity by including RNA-Seq libraries from H. melpomene head, legs, antennae, and mouth parts for one male and one female, 8 libraries total.
DOI: 10.5061/dryad.8fh6s/1
title: Predicted species richness of grassland and forest vegetation in the Czech Republic (shapefiles)

description: ESRI shapefiles containing maps of species richness of grassland and forest vegetation in the Czech Republic modelled by Random Forest. Numbers of all, native, alien and Red List species were modelled for 16 sq. m plots for grasslands and 400 sq. m plots for forests. Model results were projected to a grid of 37,763 cells, each spanning 1.25' of longitude and 0.75' of latitude, which corresponds to approximately 1.5 × 1.39 km (2.09 sq. km).
DOI: 10.5061/dryad.8mp74/1
title: Code for Creating and Modeling Virtual Species

description: The R code for simulating and then modeling a virtual species across landscape in Scandinavia. This is the code for the habitat generalist in the heterogeneous landscape - the same analysis was used for other created species (except for parameters changed described in paper).
DOI: 10.5061/dryad.c15v5/1
title: VanWyngaardenM_etal_SeascapeGen_RADseq_SNPs

description: This VCF file contains 7216 RAD-seq derived SNPs detected among 12 Northwest Atlantic Ocean populations of the sea scallop, Placopecten magellanicus. The program stacks v0.9999 was used to call variants.
DOI: 10.5061/dryad.c15v5/2
title: VanWyngaardenM_etal_SeascapeGen_RADseq_Barcodes_Index

description: This file contains population information and the sequences for  the P1 Barcodes and the P2 Indexes for all adult sea scallops collected and used in the analysis. This information will allow readers to demultiplex the data from the raw sequence reads archived in NCBI SRA and repeat the SNP calling analysis.
DOI: 10.5061/dryad.c15v5/3
title: VanWyngaardenM_etal_SeascapeGen_FinalEnvironmentalData

description: This file contains data for the final 90 environmental variables used to compare genetic and environmental variation among sea scallop populations as well as the latitude and longitude of all 12 sample sites.  Data have been standardized to 0 mean and unit variance.
DOI: 10.5061/dryad.c15v5/4
title: VanWyngaardenM_et_al_SeascapeGen_SampleSiteDistance

description: This file contains distances (in kilometers) from the furthest north sample site (SUN) for all populations of Placopecten magellanicus sampled along a one dimensional transect (estimated using Google Earth).