cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22139861.v1
title: Supplementary Material for: Predicting Complexity in Transurethral Resection of Bladder Tumours: External Validation and Modification of the Bladder Complexity Score

description: <b><i>Introduction:</i></b> First external validation of the Bladder Complexity Score (BCS) for predicting complex transurethral resection of bladder tumours (TURBT). <b><i>Methods:</i></b> For BCS calculation, TURBTs performed at our institution between January 2018 and December 2019 were reviewed for the presence of preoperative characteristics listed in the Bladder Complexity Checklist (BCC). Receiver operating characteristics (ROC) analysis was used for BCS validation. To establish a modified BCS (mBCS) with maximum area under the curve (AUC), multivariable logistic regression (MLR) analysis was performed with all BCC-characteristics for different definitions of complex TURBT. <b><i>Results:</i></b> 723 TURBTs were included in statistical analyses. Cohort’s mean BCS was 11.2 ± 2.4 points (range: 5.5–22 points). In ROC analysis, BCS could not predict complex TURBT (AUC 0.573 [95% CI: 0.517–0.628]). MLR identified tumour size (OR 2.662, <i>p</i> &lt; 0.001), and tumour number &gt; 10 (OR 6.390, <i>p</i> = 0.032) as sole predictors for the modified endpoint of complex TURBT defined as a procedure meeting &gt; 1 criterion: incomplete resection, surgery &gt; 1 h, intraoperative complication, postoperative complications Clavien-Dindo ≥ III. mBCS increased the prediction to an AUC of 0.770 (95% CI: 0.667–0.874). <b><i>Conclusion:</i></b> In this first external validation, BCS remained an insufficient predictor of complex TURBT. mBCS requires reduced parameters, is more predictive and easier to apply in clinical practice.
DOI: 10.6084/m9.figshare.22647661.v1
title: Serum PFAS in Municipal Firefighters

description: These data include demographics, fireground exposure variables, and PFAS measurements for 154 firefighters (99 incumbents and 55 recruits). Follow-up data collection occurred for recruit firefighters only. <br> Fireground exposure variables in this dataset are: total number of fire runs (total.num.fireruns), total duration (hours) of fire runs (total.duration.hrs), days since most recent fire (days.since.MRF), number of structural fire runs (str.num.fireruns), duration (hours) of structural fire runs (str.duration.hrs), and days since most recent structural fire (days.since.struc.MRF). <br> The nine PFAS are: perfluorohexane sulfonate (PFHxS), linear PFOS (n-PFOS), monomethyl branched isomers of PFOS (Sm-PFOS), linear perfluorooctanoate (n-PFOA), branched isomers of perfluorooctanoate (Sb-PFOA), perfluorononanoate (PFNA), perfluorodecanoate (PFDA), perfluoroundecanoate (PFUnDA), and 2-(N-methyl-perfluorooctane sulfonamido) acetate (MeFOSAA). PFAS units are nanograms per milliliter (ng/mL). The limit of detection for all PFAS in this study was 0.1 ng/mL. <br> <br>
DOI: 10.6084/m9.figshare.4584304.v1
title: Data and integrated population models for Ecological Applications manuscript "Assessing the importance of demographic parameters using Bayesian integrated population modeling.

description: Data and JAGS code to run base and sensitivity integrated population models using program R. Please see attached Metadata files for specific details.
DOI: 10.6084/m9.figshare.1180122.v5
title: RCUK APC data (2013-14)

description: This dataset contains article processing charge (APC) data which some institutions in the UK have released as part of their compliance with the RCUK open access policy. The data covers APCs paid from RCUK funds from 1 April 2013 - 31 July 2014. The data has been taken from other publicly available datasets and re-combined into a single standard format (see https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/). It should not be regarded as representing all APCs paid by these institutions. Originally, the data was from institutions which chose to release it themselves. It has now been expanded to include data released by RCUK in March 2015 (http://www.rcuk.ac.uk/research/openaccess/2014review/data/). The dataset contains data on 3,721 APCs from 29 institutions. <strong>UPDATE 05/06/2015</strong>: 13 APCs from Northumbria University were removed because they were not paid from RCUK funds.
DOI: 10.6084/m9.figshare.13434338.v1
title: Tibães Corridor 16:05 - Hyperspectral Radiance Image

description: Hyperspectral radiance data. The zipped file contains an unaveraged hyperspectral radiance image in Matlab MAT format, size 1024 × 1344 × 33, and spectral radiance in W m<sup>−2</sup> sr<sup>−1</sup> nm<sup>−1</sup>. The image is one of a pair of images acquired at different times. The zipped file also contains a BMP colour image, rendered from the radiance image, and an information document, which includes geographic location. The separate JPG image of the scene is for illustration only. Padding artefacts may be visible at the image edges. The hyperspectral images were acquired by Sérgio Nascimento, Kinjiro Amano, and David Foster from the Minho region of Portugal in 2002 and 2003.<br>This data item is part of a collection. For details see the data item "README Hyperspectral radiance image pairs 2021" and the published article https://rdcu.be/cd15y.
DOI: 10.6084/m9.figshare.25739763.v1
title: Supplementary Material for: Antiplatelet Treatment in Moyamoya Disease: A Systematic Review

description: Background: Moyamoya disease (MMD) is an uncommon cause of stroke. Antiplatelet treatment is commonly prescribed for patients with MMD despite the lack of strong evidence supporting its efficacy. We conducted a systematic review to evaluate evidence of antiplatelet treatment and clinical outcomes among patients with MMD. 

Methods: A systematic literature search was performed to identify studies that evaluated the association between antiplatelet treatment and clinical outcomes, including ischemic stroke, hemorrhagic stroke, functional outcome, survival, and bypass patency, in patients with MMD. The following databases were searched: Pubmed, Embase, Scopus, and the Cochrane Library, from the inception date to February 2022. 

Results: Eight studies were included in this systematic review. Six studies evaluated antiplatelet treatment and ischemic stroke. Most studies did not demonstrate a protective effect of antiplatelet treatment against ischemic stroke. Five studies evaluated antiplatelet treatment and hemorrhagic stroke. All of them did not demonstrate an increased risk of hemorrhagic stroke. One study found the benefit of antiplatelet treatment in terms of survival. Regarding the effect of antiplatelet on functional outcome and patency of surgical bypass, the results were inconclusive. 

Conclusions: Current evidence suggests that antiplatelet treatment in patients with MMD did not demonstrate a protective effect against ischemic stroke. However, antiplatelet treatment did not increase the risk of hemorrhagic stroke in patients with MMD. The well-designed randomized controlled trial should be highlighted.
DOI: 10.6084/m9.figshare.12652979.v1
title: disparity measurements

description: differences in distance calculated by Matlab vs distance measured in Fijidataset for figures in SynapsEM
DOI: 10.6084/m9.figshare.24235387.v1
title: Statistical table of the number of young people's physical fitness and health researchers in Xinjiang Altay prefecture, Chinaphysical fitness and health researchers

description: The data comes from the China Student Physical Fitness and Health Research Report, which is conducted every five years in China for children and adolescents across the country, and all the data comes from the text version of the National Student Physical Fitness and Health Research Report 1985-2019.
DOI: 10.6084/m9.figshare.27275988.v2
title: Supplementary files belonging to Crous et al. (2024) Fungal Planet description sheets: 1697–1780 - Fungal Systematics and Evolution 14: 325–577

description: Alignments and phylogenetic trees processed through Mesquite and belonging to new species described in this Fungal Planet set contributed by the Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands. See the figure legends associated with each description sheet in the original publication for more details. A table with GenBank accession numbers is provided for Fungal Planet 1700 (<i>Penicillium geertdesnooi</i>).<br>
DOI: 10.6084/m9.figshare.5122600.v1
title: Supplementary Material for: The Mechanism of Injury-Induced Intracellular Calcium Concentration Oscillations in the Endothelium of Excised Rat Aorta

description: Endothelial injury is the primary event that leads to a variety of severe vascular disorders. Mechanical injury elicits a Ca<sup>2+</sup> response in the endothelium of excised rat aorta, which comprises an initial Ca<sup>2+</sup> release from inositol-1,4,5-trisphosphate (InsP<sub>3</sub>)-sensitive stores followed by a long-lasting decay phase due to Ca<sup>2+</sup> entry through uncoupled connexons. The Ca<sup>2+</sup> signal may also adopt an oscillatory pattern, the molecular underpinnings of which are unclear. In the light of the role played by Ca<sup>2+</sup> spiking in tissue regeneration, this study aimed to unveil the mechanisms underlying injury-induced Ca<sup>2+</sup> oscillations. The latter reversibly ceased upon removal of extracellular Ca<sup>2+</sup> or addition of the gap junction blockers heptanol, 18 α,β-glycyrrhetinic acid, La<sup>3+</sup> and Ni<sup>2+</sup>, but were insensitive to BTP-2 and SKF 96365. The spiking response was abolished by inhibiting the Ca<sup>2+</sup> entry mode of the Na<sup>+</sup>/Ca<sup>2+</sup> exchanger (NCX). The InsP<sub>3</sub>-producing agonist ATP resumed Ca<sup>2+</sup> oscillations in silent cells, while the phospholipase C inhibitor U73122 suppressed them. Injury-induced Ca<sup>2+</sup> transients were prevented by the sarcoplasmic-endoplasmic reticulum calcium ATPase (SERCA) blockers thapsigargin and cyclopiazonic acid, while they were unaffected by suramin and genistein. These data show for the first time that the coordinated interplay between NCX-mediated Ca<sup>2+</sup> entry and InsP<sub>3</sub>-dependent Ca<sup>2+</sup> release contributes to injury-induced intracellular Ca<sup>2+</sup> concentration oscillations.
DOI: 10.6084/m9.figshare.7228004.v1
title: Additional file 1: of Fecal source identification using random forest

description: Sample metadata. Sample metadata includes Sample ID of the samples used to create or test the classifiers in the paper, sample origin and collection date. The volume or the weight, as well as the name of the DNA kits used to extract total bacterial DNA are also mentioned. The densities of fecal indicator bacteria and human markers in the freshwater samples are indicated. Short Read Archive and the individual SRR accession number are listed to be used to reference the raw sequence file from NCBI. (XLSX 138 kb)
DOI: 10.6084/m9.figshare.3413839.v2
title: New LA-ICPMS U–Pb ages of detrital zircons from the Highland Complex: insights into late Cryogenian to early Cambrian (ca. 665–535 Ma) linkage between Sri Lanka and India

description: Here we report new LA-ICPMS U–Pb zircon geochronology of ultrahigh temperature (UHT) metasedimentary rocks and associated crystallized melt patches, from the central Highland Complex (HC), Sri Lanka. The detrital zircon <sup>206</sup>Pb/<sup>238</sup>U age spectra range between 2834 ± 12 and 722 ± 14 Ma, evidencing new and younger depositional ages of sedimentary protoliths than those known so far in the HC. The overgrowth domains of zircons in these UHT granulites yield weighted mean <sup>206</sup>Pb/<sup>238</sup>U age clusters from 665.5 ± 5.9 to 534 ± 10 Ma, identified as new metamorphic ages of the metasediments in the HC. The zircon ages of crystallized in situ melt patches associated with UHT granulites yield tight clusters of weighted mean <sup>206</sup>Pb/<sup>238</sup>U ages from 558 ± 1.6 to 534 ± 2.4 Ma. Thus, using our results coupled with recently published geochronological data, we suggest a new geochronological framework for the evolutionary history of the metasedimentary package of the HC. The Neoarchean to Neoproterozoic ages of detrital zircons indicate that the metasedimentary package of the HC has derived from ancient multiple age provenances and deposited during the Neoproterozoic Era. Hence, previously reported upper intercept ages of ca. 2000–1800 Ma from metaigneous rocks should be considered as geochronological evidence for existence of a Palaeoproterozoic igneous basement which possibly served as a platform for the deposition of younger supracrustal rocks, rather than timing of magmatic intrusions into the already deposited ancient sediments, as has been conventionally interpreted. The intense reworking of entire Palaeoproterozoic basement rocks in the Gondwana Supercontinent assembly may have caused sediments of multiple ages and provenances to incorporate within supra-crustal sequences of the HC. Further, our data supports a convincing geochronological correlation between the HC of Sri Lanka and the Trivandrum Block of Southern India, disclosing the Gondwanian linkage between the HC of Sri Lanka and Southern Granulite Terrain of India.
DOI: 10.6084/m9.figshare.24542080.v1
title: Supplementary Material for: A Rare Clinical Case of Secondary Central Nervous System Involvement without Transformation in Hairy Cell Leukemia: Case Report and Literature Review

description: Introduction Hairy cell leukemia (HCL) is an indolent B-cell lymphoma characterized by a specific genetic mutation, BRAF V600E, which affects the specific morphology and oncogenesis. For HCL, few reports regarding secondary central nervous system involvement (SCNSI) are available. Herein, we present the case of an 80-year-old woman who had a relapse of HCL with SCNSI. Case presentation The diagnosis of HCL was made in June 2015 after identifying BRAF V600E proteins by immunohistochemical analysis, and the disease was then controlled for 6 years by employing chemoimmunotherapy. In February 2021, the patient was admitted with neurological symptoms such as dizziness. Magnetic resonance imaging of the brain showed abnormal enhancement in the cerebrum, and cerebrospinal fluid analysis revealed neoplastic cells without transformation into large cells. Thus, the patient was diagnosed as having SCNSI in HCL. Conclusion We report a case of a rare clinical presentation of SCNSI in HCL with literature review.
DOI: 10.21233/a1eb-4w04
title: Itoman ostracode surface sample dataset

description: Raw data for the Itoman ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.4121/uuid:717d2e38-9ce7-423f-947d-7c74567dafd8
title: Westelijke Waddenzee (bathymetric maps)

description: Bathymetric maps of the Western part of the Dutch Wadden Sea, period 1985-1999. Details of Amelander Zeegat, Eyerlandse Gat, Marsdiep, Vlie en Friesche Zeegat.
DOI: 10.6084/m9.figshare.27050479.v2
title: Supplementary Material for: Selective adjuvant Ayurvedic treatment modulates immune response and oxidative stress in patient with carcinoma of pyriform fossa, undergoing radiotherapy: A case study

description: Introduction - Hypopharyngeal squamous cell carcinoma has poor prognosis with only 25% chances of 5 years of relative survival in such patients in spite of conventional treatment including radical surgery, radiotherapy and concurrent chemotherapy.
Case Presentation – A chronic tobacco - betel nut chewer 62-years-old male patient had dysphagia with hoarseness of voice diagnosed with stage III, grade II malignant pyriform fossa. The patient underwent 9 cycles of neo adjuvant chemotherapy with Inj Paclitaxel 100 mg and Inj Cisplatin 40 mg. He was then referred to our institute for Radical Radiotherapy with Concurrent Chemotherapy with adjunct Ayurvedic treatment. A total dose of 70 Gy of radiation with cobalt 60 source was administered to the bilateral face and neck, in 35 fractions. Patient also received 6 cycles of concurrent weekly chemotherapy with Inj Cisplatin 40 mg. He received well planned adjunct Ayurvedic treatment in the form of Oral Ayurvedic Medicines (OAM) and Detoxifying treatment, Panchakarma. All the measured adverse effects of radiotherapy such as Stomatitis, Xerostomia, Taste Alteration, Dysphagia, Nausea etc. were observed to be remarkably low during and post radiotherapy in this patient. Karnofsky and QoL scores revealed patient’s wellbeing throughout the treatment course. After 5 years PET CT scan revealed no FDG avid loco regional recurrence or distant organ involvement implying Disease Free Survival (DFS). Various Chemokines, cytokines and oxidative stress were assessed during the course of treatment to observe tumour microenvironment.
Conclusion – Present case of HNC, Stage III and Grade II belonged to high-grade, high-risk hypopharyngeal cancer with poor prognosis. The patient opted for Ayurvedic treatment besides radiotherapy which continued thereafter for 5 years. We therefore emphasize that in this case, minimum side effects of radiotherapy, immunomodulation and reduction in inflammation and oxidative stress along with good quality of life can be attributed to OAM and repeated detoxifying Panchakarma treatment supported with healthy diet and good lifestyle. The highlight of the study is the marked effect on the patient’s immune response and reduction in oxidative stress leading to 5 years and beyond of DFS.
DOI: 10.17632/98kywndfvh
title: Dataset of Hydrological Experiments at Zizhou Station in the Yellow River Basin

description: The data includes hydrological elements from the Snakejiagou Basin, Chabagou Basin, and Tuoerxianggou Basin at the Zizhou Experimental Station in the river basin. The projects covered include: daily precipitation, precipitation summaries for flood seasons, precipitation processes, groundwater levels, water temperature, measured flow rates, daily average flow rates, flood characteristic statistics, daily average sediment concentration, daily average suspended sediment transport rate, daily average air temperature, daily relative humidity, daily average ground temperature, daily average sunshine duration, daily evaporation, and soil moisture content.
DOI: 10.23645/epacomptox.17152964.v1
title: Evaluation of in vitro new approach methodologies for Developmental Neurotoxicity: Supplemental Files

description: Dataset 2 for "Evaluation of in vitro new approach methodologies for Developmental Neurotoxicity"<br>Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.6084/m9.figshare.27923973.v3
title: SPTT & SPTEdu-seq dataset

description: <b>Dataset Overview</b><br>This dataset has been generated using our SPTT and SPTEdu-seq techniques. Below are the details for each file included:FilesTo optimize storage, all datasets are compressed into tar.gz format. Please extract the files after downloading.<b>MOB.tar.gz</b><b>Profiled by:</b> SPTT<b>Contents:</b>Digital expression data (in sparse matrix <code>.mtx</code> format)Metadata including:Spatial barcodesSpatial coordinatesSeurat clusters(and cell type annotations)Other essential information<b>MouseBrain.tar.gz</b><b>Profiled by:</b> SPTT<b>Contents:</b>Digital expression data (in sparse matrix <code>.mtx</code> format)Metadata including:Spatial barcodesSpatial coordinatesSeurat clusters(and cell type annotations)Other essential information<b>IS_MOB.tar.gz</b><b>Profiled by:</b> SPTEdu-seq<b>Contents:</b>Digital expression data (in sparse matrix <code>.mtx</code> format)Metadata including:Spatial barcodesSpatial coordinatesSeurat clustersDesignations of barcodes as either <i>hippocampus region</i> or <i>cortex region</i> for cell type deconvolution and RNA velocity assays<br><br><b>IS_uninjured.tar.gz</b>, <b>IS_3dpi.tar.gz</b>, <b>IS_7dpi.tar.gz</b>, and <b>IS_14dpi.tar.gz</b><b>Profiled by:</b> SPTEdu-seq<b>Contents:</b>Digital expression data (in sparse matrix <code>.mtx</code> format)Metadata including:Spatial barcodesSpatial coordinatesUTI profiling numbersSeurat clustersDesignations of barcodes as <i>injury regions</i> (based on unsupervised clustering and spatial coordinates)<br>
DOI: 10.6084/m9.figshare.841742.v1
title: ORCID iD Growth

description: Data corresponding to ORCID's growth since launch
DOI: 10.6084/m9.figshare.1248873.v1
title: Ovarian cancer survival data

description: Anonymized and de-identified data on selected patients with epithelial ovarian cancer with primary surgery at the University Medical Center Hamburg-Eppendorf between 1993 and 2010
DOI: 10.6084/m9.figshare.13353362.v1
title: 国内新冠肺炎疫情对旅客运输量的影响.rar

description: 2020年的年初，一场突如其来的疫情对社会生活的很多方面产生了巨大的影响。新冠肺炎病毒随着人口的流动传播到全国各地，累计造成了中国数万人感染。客流量在一定程度上反映了交通运输行业的状况，我们以各类交通运输工具的旅客运输量为切入点，将疫情形势动态相关的数据与几类主要交通运输工具的旅客运输量相结合，探讨两者之间的相关关系，尝试分析随着疫情形势的变化，各类交通运输工具旅客运输量呈现怎样的变化趋势，以此分析新冠肺炎疫情对各类交通客流量的具体影响，揭示新冠肺炎疫情影响下的全国交通运输状况。
DOI: 10.6084/m9.figshare.4483463.v1
title: Object-Based Image Analysis for Detection of Japanese Knotweed s.l. taxa (Polygonaceae) in Wales (UK)

description: Japanese Knotweed <i>s.l. </i>taxa are amongst the most aggressive vascular plant Invasive Alien Species (IAS) in the world. These taxa form dense, suppressive monocultures and are persistent, pervasive invaders throughout the more economically developed countries (MEDCs) of the world. The current paper utilises the Object-Based Image Analysis (OBIA) approach of Definiens Imaging Developer software, in combination with very high spatial resolution (VHSR) colour infra-red (CIR) and visible-band (RGB) aerial photography in order to detect Japanese Knotweed <i>s.l. </i>taxa in Wales (UK). An algorithm was created using Definiens in order to detect these taxa, using variables found to effectively distinguish them from landscape and vegetation features. The results of the detection algorithm were accurate, as confirmed by field validation and desk-based studies. Further, these results may be incorporated into Geographical Information Systems (GIS) research as they are readily transferable as vector polygons (shapefiles). The successful detection results developed within the Definiens software should enable greater management and control efficacy. Further to this, the basic principles of the detection process could enable detection of these taxa worldwide, given the (relatively) limited technical requirements necessary to conduct further analyses.
DOI: 10.17632/5nttxzp32w
title: Docking of 9-O-acetylated sialoglycans onto mammalian sialic acid esterase (SIAE) by molecular dynamics

description: Trajectory files of 10 ns production MD runs to dock 9-O-acetylated sialoglycans, with different glycosidic linkages (a2-3, a2-6).

Files are named according to the substrate used for docking.

9-O23 corresponds to Neu5,9Ac2a2-3Galb1-4GlcNAca-OH
9-O26 corresponds to Neu5,9Ac2a2-6Galb1-4GlcNAca-OH
DOI: 10.6084/m9.figshare.12126972.v1
title: QIIME Mapping Files

description: A tar archive of the QIIME mapping files (.txt) needed for demultiplexing the .fastq files in the NCBI database (Table 2). The mapping file names in the tar archive match those of the associated .fastq files. Each mapping file contains the F and R primer sequences along with the unique primer tag for each of the 96 scat samples listed in the sequencing plate.