cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/byxw9bx73y.2
title: supplementary materials to https://doi.org/10.1016/j.jenvman.2020.111252

description: This data describes the supplementary materials (additional Figures, and Tables) for the article https://doi.org/10.1016/j.jenvman.2020.111252 
Thermoacidophilic effective microbes (tEM) were used to enhance the composting process of lignocellulosic waste. Composting with tEM slightly reduced NH3 emission during the composting process while CH4, and CO2 patterns positively correspond to the rate of composting, with higher emissions in tEM treatment during 60d – 90d composting. Compost microbial evolution based metagenomic DNA sequencing and culture-based microbial enumeration indicate higher abundance and diversity of microbes in tEM treated groups especially at thermophilic temperatures. Chemical analysis showed higher rate of mineralization in tEM treated compost compared to control group while the heavy metal content was below the international threshold levels in both treatment and control. Moreover, germination index (Gi) and global germination index (GI) were higher in tEM treated compost compared to control group. The data is important for evaluating composting efficiency and quality of the final compost product.
DOI: 10.17632/96jwcyxgn6.1
title: An Airway Organoid-Based Screen Identifies a Role for the HIF1α-Glycolysis Axis in SARS-CoV-2 Infection 

description: SARS-CoV-2 causes the COVID-19 pandemic. It is urgent to develop disease models to dissect mechanisms regulating SARS-CoV-2 infection. Here, we derive airway organoids from human pluripotent stem cells (hPSC-AOs). The hPSC-AOs, particularly ciliated-like cells, are permissive to SARS-CoV-2 infection. Using this platform, we perform a high content screen and identify GW6471, which blocks SARS-CoV-2 infection. GW6471 can also block infection of the B.1.351 SARS-CoV-2 variant. RNA-seq analysis suggests that GW6471 blocks SARS-CoV-2 infection at least in part by inhibiting HIF1α, which is further validated by chemical inhibitor and genetic perturbation targeting HIF1α. Metabolic profiling identifies decreased rates of glycolysis upon GW6471 treatment, consistent with transcriptome profiling. Finally, xanthohumol, 5-(Tetradecyloxy)-2-furoic acid, and ND-646, three compounds that suppress fatty acid biosynthesis, also block SARS-CoV-2 infection. Together, a high content screen coupled with transcriptome and metabolic profiling reveals a key role of the HIF1α-glycolysis axis in mediating SARS-CoV-2 infection of human airway epithelium.
DOI: 10.17632/vvrwzztb2z.1
title: MANUSCRIPT_ ENGLISH Qol coping

description: Demographic, behavioral, clinical, and laboratory data were described by absolute and relative frequencies, or by means and standard deviations according to their classification. Associations between the variables of interest and adherence were assessed using the Chi-square test. The comparison of continuous quantitative variables, such as quality of life and coping strategies, regarding the adherence, was obtained using the Student's t-test, if the distributions were symmetric, or the non-parametric Manny-Whitney test, if they were not.  Normality was verified through the Kolmogorov-Smirnov test. The independent effect of the variables on adherence was evaluated through a multivariate logistic regression model by the Backward Stepwise RL method. It ran as input variables those with a p-value <0.20 in the univariate analysis. The adequacy of the model was verified by the Hosmer-Lemeshow test (p> 0.05). The results were presented as adjusted odds ratio (aj.OR), with their respective 95% confidence interval (95% CI).  The definitive model was accepted after all adjustment criteria were met. We used univariate logistic regression to estimate the probability of the adherence variable may occur due to the pharmaceutical intervention. All analyzes were performed using the statistical program SPSS version 26 (IBM®), and the significance level was set at 5%.
DOI: 10.17632/d5xdrgdkjb.1
title: Methionine supplementation during a hydrogen peroxide challenge alters components of insulin signaling and antioxidant proteins in subcutaneous adipose explants

description: This file contains Supplemental tables describing:
Suppl. Table 1. Non-exhaustive compilation of manuscripts dealing with dairy cow adipose tissue explant cultures available in PubMed. 
Suppl. Table 2. Gene symbol, accession number, and forward and reverse primer sequence of the genes analyzed. 
Suppl. Table 3. RT-qPCR performance among the genes measured in adipose tissue explants.
Suppl. Table 4. Antibody symbol, catalog number, company, dilution ratio, and antibody name for antibodies measured. 
Suppl. Figure 1. Representative blots of proteins in subcutaneous adipose tissue (SAT; n = 4/treatment) cultured in media with an “ideal” profile of essential amino acids (CTR; Lys: Met 2.9:1), SAT incubated with CTR plus 100 μM H2O2 (HP), or SAT incubated with CTR plus enhanced Met supply plus 100 μM H2O2 (HPMET; Lys:Met 2.5:1).
DOI: 10.17632/b36vz2ms3d.1
title: Local Time Dependence of Jupiter's Polar Auroral Emission Observed by Juno UVS:  Juno UVS Auroral Images

description: The data in this archive are the brightness and color ratio maps of the 101 spin integrated maps produced from the UVS instrument on the Juno Mission.  There are 7 directories, one for each figure.  Figures where more than one brightness/color ratio image set exist have individual files labeled by perijove (pj).  Each idl save file contains four arrays: 1) brightness_map (kR), 2) color_raio_map, 3) latitude_map (System III, degrees), and 4) longitude_map (System III west, degrees).  In addition, we have written out the same data in fits format with the brightness map as extension 1, the color ratio map as extension 2, the latitude maps is in extension 3 and the longitude map is in extension 4.   These data are in support JGR Planets paper "Local Time Dependence of Jupiter's Polar Auroral Emission Observed by Juno UVS" by Greathouse et al.
DOI: 10.17632/8f6w3vj74t.1
title: Efficacy of the pyrrole insecticide chlorfenapyr against pyrethroid resistant Aedes aegypti

description: Database from manuscript describing the efficacy of chlorfenapyr on pyrethroid-resistant Aedes aegypti.
DOI: 10.17632/s346b3tsbf.2
title: Czechoslovak tariffs in the 1920s – an example of historical specificity in economic policy (data attachment)

description: TABLE 1. Most significant import and export items, 1921, 1923, 1926;
TABLE 2. Tariffs for the most significant commercial items 1914, 1921, 1923, 1926;
TABLE 3. Development of industries in 1920s;
TABLE 4. Governments and elections;
TABLE 5. Exchange rate of the Czechoslovak koruna in New York and Zurich, monthly averages
DOI: 10.17632/9gs7w7s947.1
title: A Mediterranean-like fat blend protects against the development of severe colitis in the mucin-2 deficient murine model

description: Analysis of the bacteriome (Distal colon) in Mucin 2 deficient mice exposed to diets rich in a Mediterranean fat blend, corn oil, olive oil or anhydrous milk fat.
DOI: 10.17632/hdwfm3zpd8.1
title: Trends in Downwelling Longwave Radiance over the Southern Great Plains

description: Downwelling longwave radiation (DLR) is an important part of the surface energy budget. Spectral trends in the DLR provide insight into the radiative drivers of climate change. In this research, we process and analyze a 23-year downwelling longwave radiance record measured by the Atmospheric Emitted Radiance Interferometers (AERI) at the Southern Great Plains (SGP) site of the Atmospheric Radiation Program.  Using the 23-year record, we analyze the all-sky radiance trends in DLR, which reflects the associated surface warming trend at SGP during this same period and also the complex changes in meteorological conditions.  Our analysis shows that the radiance trend uncertainty in the DLR record to date mainly results from the climate internal variability rather than the measurement error, which highlights the importance of continuing the DLR spectral measurements to unambiguously detect and attribute climate change.
DOI: 10.17632/3trnky8mj9.2
title: Laser Micromachining of Magnetoactive Elastomers as Enabling Technology for Magneto-Responsive Surfaces

description: A simple method for structuring of the surface of a magnetoactive elastomer (MAE) on the tens of micrometers scale, which capabilities extend beyond conventional mold-based polymer casting, is reported. The method relies on the ablation of the material by absorption of nanosecond infrared pulses from a commercial laser. It is shown that it is possible to fabricate parallel lamellar structures with a high aspect ratio (up to 6 : 1) as well as structures with complex scanning trajectories. The method is fast (fabrication time for the 7 x 7 mm2 is about  60 s), and the results are highly reproducible. To illustrate the capabilities of the fabrication method, both orthogonal to the MAE surface and tilted lamellar structures are fabricated. These magnetosensitive lamellae can be easily bent by ±45° using an external magnetic field of about 230 mT. It is demonstrated that this bending allows one to control the sliding angle of water droplets in a great range between a sticky (>90°) and a sliding state (<20°). Perspectives on employing this fabrication technology for magneto-sensitive smart surfaces in microfluidic devices and soft robotics are discussed.

Movie files show measurements of the sliding angle of water droplets. Their names include the following information:
MAE_<structure type>_B<magnetic field amplitude in mT>_<angle of magnetic field>.avi

DOI of article: 10.1002/admt.202101045
DOI: 10.17632/dhbgkvn5f6.1
title: Proposed wildfire legislation in California, 2001-2020

description: File includes wildfire-related bill and associated legislator, legislative process, and bill intent data from California between the 2001-2002 and 2019-2020 legislative sessions.  Bill topics stem from a Latent Dirichlet Allocation (LDA) topic model using summary bill text from 294 wildfire-related bills identified by keywords and assessed for relevance from the California State Legislature. To determine whether wildfire bills overall or those in a particular topic were associated with groups of characteristics related to legislators, legislative processes, and bill text, we use logistic and linear regression, as appropriate.  We repeat this logistic regression approach nine times for (1) bill outcome (i.e., pass, fail, or veto); (2) legislators (political party, originating house, co-sponsors, bipartisan sponsorship, gender, rural or not rural, and recent wildfire or no recent wildfire); (3) review by appropriations committee, (4) urgency measures, (5) state mandates, (6) wildfire cycle stage (mitigation, preparedness, response, relief, recovery, smoke); (7) holiday focus; (8) vulnerable or disadvantaged population focus; and (9) geographic focus. We use linear regression to examine non-binary data, specifically for (1) legislators (i.e., number of sessions served, number of wildfire bills proposed that session) and (2) legislative processes (how many committees reviewed the bill). These statistical analyses determined whether bills were more or less likely to have certain legislator, legislative process, and bill text characteristics.
DOI: 10.17632/sd4s5j796g.1
title: School directors

description: Results from a survey on Schools' Directors in Portugal
DOI: 10.17632/nxsd8n3tk6.1
title: Mooring (temperature and current), water profiler, authomatic weather station and bathymetry data from Lago Grey

description: This is a data set to be published in the paper below.
Sugiyama, S., Minowa, M., Fukamachi, Y., Hata, S., Yamamoto, Y., Sauter, T., Schneider, C., Schaefer, M. (2021). Subglacial discharge controls seasonal variations in the thermal structure of a glacial lake in Patagonia. Nature Communications.
DOI: 10.17632/v5gxmwyg79.2
title: Dataset Correlation Stock Price Towards Public Sentiment in Automotive Industry

description: The following data is the result of sentiment analysis and stock prices for car brands (Volkswagen, Chrysler, General Motors) from various social media and news platforms
DOI: 10.17632/gb9zrjpt92.1
title: Stress-dependent inhibition of Cdc42 activity and cell polarity

description: Dataset from manuscript: Salat-Canela C, Carmona M, Martín-García R, Pérez P, Ayté J and Hidalgo E. Stress-dependent inhibition of polarized cell growth through unbalancing the GEF/GAP regulation of Cdc42. Cell Reports, 2021.
DOI: 10.17632/f4f2vd67rk.1
title: perineal wound

description: Retrospective case series of victims of post-traumatic perineal wounds hospitalized from January the 1st, 2009 to December the 31st, 2018 in surgery department B in Charles Nicolle’s Hospital.
DOI: 10.17632/wdng2cjhmy.2
title: A2IR: Audio-to-Image Representation

description: A2IR is a dataset for synthetic audio detection using deep learning. It includes five audio-to-image representations for natural and synthetic audio: spectrograms, histograms, scatter plots, bispectrum phase plots and bispectrum magnitude plots. Each category is divided into 3 subsets: training 56.72% (11,400 images), validation 33.83% (6,800 images), and test 9.47% (1,900 images). In each subset, the images are separated into two folders, natural and synthetic, with a balanced classification (i.e. each class has the same number of images as the other or very similar).
DOI: 10.17632/3zz8226nmy.2
title: Robotic Survey of Sunken Pirate City: Port Royal, Jamaica - raw data

description: This dataset is the resulting output of the NOAA funded project: https://oceanexplorer.noaa.gov/explorations/15portroyal/welcome.html. 

This dataset contains  the raw data from the Kingfisher ASV.
DOI: 10.17632/jtbw57ftyv.1
title: Data for: Sentinel-1 and RADARSAT Constellation Mission InSAR assessment of slope movements in the Southern Interior of British Columbia, Canada

description: Senitnel-1 linear deformation rate maps of east-west and vertical movements over the Southern Interior of British Columbia, Canada (October 2017 to June 2021) & Sentinel-1 (20200618-20200922) and RCM DInSAR interferograms (June 2020 to September 2020); Refer to the corresponding paper published in 'Remote Sensing'  for details.
DOI: 10.5281/zenodo.5533461
title: Spreadsheet Debugging: The Perils of Tool Over-reliance

description: Spreadsheets are widely used in organizations for various purposes such as data aggregation, reporting and decision-making. Since spreadsheets, like other types of software, can contain faulty formulas, it is important to provide developers with appropriate methods to find and fix such faults. Recently, various heuristic and statistics-based fault identification methods were proposed, which point developers to potentially faulty parts of the spreadsheets. Due to their heuristic nature, these methods might, however, miss some faults. As a result, if spreadsheet developers rely too strongly on these methods, they might not pay sufficient attention to problems that are not pinpointed by the methods. In this research, we are the first to study this potential problem of over-reliance in spreadsheet debugging, which may lead to limited debugging effectiveness. We report the outcome of a controlled experiment where 59 participants were tasked to find faulty formulas in a given spreadsheet with and without support of a novel spreadsheet debugging tool. The provided dataset contains detailed results of the study, the spreadsheet that was used for the study, and other supporting materials.
DOI: 10.5281/zenodo.5533460
title: Spreadsheet Debugging: The Perils of Tool Over-reliance

description: Spreadsheets are widely used in organizations for various purposes such as data aggregation, reporting and decision-making. Since spreadsheets, like other types of software, can contain faulty formulas, it is important to provide developers with appropriate methods to find and fix such faults. Recently, various heuristic and statistics-based fault identification methods were proposed, which point developers to potentially faulty parts of the spreadsheets. Due to their heuristic nature, these methods might, however, miss some faults. As a result, if spreadsheet developers rely too strongly on these methods, they might not pay sufficient attention to problems that are not pinpointed by the methods. In this research, we are the first to study this potential problem of over-reliance in spreadsheet debugging, which may lead to limited debugging effectiveness. We report the outcome of a controlled experiment where 59 participants were tasked to find faulty formulas in a given spreadsheet with and without support of a novel spreadsheet debugging tool. The provided dataset contains detailed results of the study, the spreadsheet that was used for the study, and other supporting materials.
DOI: 10.25919/jdqk-gt14
title: Population genetics of Allocasuarina verticillata

description: Microsatellite data for population genetic study of Allocasuarina verticillata
DOI: 10.25919/1jr1-3238
title: Acacia acinacea

description: Genetic, growth, germination and survival data
DOI: 10.6084/m9.figshare.14992356.v2
title: Setting the priorities straight - Species distribution models assist to prioritize conservation targets for the mangroves

description: <b>1.Occurrence.data:</b> Spatially rarefied occurrence data for 7 true mangroves and 3 mangrove associates, which were used in the species distribution modelling.<br><b>2.Predicted.distribution.data:</b> The number and percentage of cells predicted suitable for each species (n=10) and two species categories (true mangroves and mangrove associates) in current, past (Last Glacial Maximum and Mid-Holocene) and future (2050 and 2070) climate conditions.<br><b>3.Location.priorityConsv.data:</b> Characteristics of the three categories of priority conservation sites in form of identity of anthropogenic biome, protected areas, ecoregions and habitats. The habitat suitability for the true mangroves and mangrove associates at each of these sites in current, past and future climate has been provided.<br><b>4.Species.priorityConsv.data:</b> Estimates of current climatic niche traits for each of the 10 mangrove species, their position in the two-dimensional niche spaces, and priority ranking for conservation.<br>
DOI: 10.6084/m9.figshare.16418934
title: Supplementary Material for: Chromoendoscopy is not superior to white light endoscopy in improving adenoma detection in Lynch Syndrome cohort undergoing surveillance with high-resolution colonoscopy: a real-world evidence study

description: Medicine
DOI: 10.6084/m9.figshare.16418934.v1
title: Supplementary Material for: Chromoendoscopy is not superior to white light endoscopy in improving adenoma detection in Lynch Syndrome cohort undergoing surveillance with high-resolution colonoscopy: a real-world evidence study

description: Medicine
DOI: 10.6084/m9.figshare.16691245
title: Supplementary Material for: Vesico-Vaginal Fistula Repair by a Vaginal Approach

description: <b><i>Introduction:</i></b> The aim of this study is to determine the outcome of surgically treated vesico-vaginal fistulae (VVaFs) using a transvaginal approach with a Latzko technique. <b><i>Methods:</i></b> A retrospective chart study was conducted at the Department of Urology, Radboud University Medical Centre. Surgical approaches to repair VVaF, from 2014 to September 2020, were selected. Patients who underwent a transvaginal approach were included. The primary objective was fistula closure. Secondary objectives were predictive factors for the outcome of the surgical procedure, for example, patient characteristics, leakage on cystography 2 weeks postoperative, and surgery time. <b><i>Results:</i></b> Thirty-one patients had surgery for VVaF. Twenty-five procedures (81%) were performed transvaginally. Thirteen of these (52%) had successful transvaginal closure after the first attempt. Seven out of 12 had their second attempt at the time of analysis, of which 4 (57%) were successfully closed thereafter. After either 1 or 2 attempts with the transvaginal approach, 17 (68%) of the VVaFs were successfully closed, but 79% if patients who did not yet had a second attempt were taken into account with the current success extrapolated. Only few minor complications were observed. <b><i>Conclusion:</i></b> Transvaginal closure of VVaFs with a Latzko technique is successful in about 79% in either 1 or 2 attempts, with few minor complications. A second attempt in closing the fistula with a transvaginal approach is useful, and a previous transvaginal attempt is not a contraindication for a second transvaginal attempt in closing the VVaF surgically.
DOI: 10.6084/m9.figshare.16691245.v1
title: Supplementary Material for: Vesico-Vaginal Fistula Repair by a Vaginal Approach

description: <b><i>Introduction:</i></b> The aim of this study is to determine the outcome of surgically treated vesico-vaginal fistulae (VVaFs) using a transvaginal approach with a Latzko technique. <b><i>Methods:</i></b> A retrospective chart study was conducted at the Department of Urology, Radboud University Medical Centre. Surgical approaches to repair VVaF, from 2014 to September 2020, were selected. Patients who underwent a transvaginal approach were included. The primary objective was fistula closure. Secondary objectives were predictive factors for the outcome of the surgical procedure, for example, patient characteristics, leakage on cystography 2 weeks postoperative, and surgery time. <b><i>Results:</i></b> Thirty-one patients had surgery for VVaF. Twenty-five procedures (81%) were performed transvaginally. Thirteen of these (52%) had successful transvaginal closure after the first attempt. Seven out of 12 had their second attempt at the time of analysis, of which 4 (57%) were successfully closed thereafter. After either 1 or 2 attempts with the transvaginal approach, 17 (68%) of the VVaFs were successfully closed, but 79% if patients who did not yet had a second attempt were taken into account with the current success extrapolated. Only few minor complications were observed. <b><i>Conclusion:</i></b> Transvaginal closure of VVaFs with a Latzko technique is successful in about 79% in either 1 or 2 attempts, with few minor complications. A second attempt in closing the fistula with a transvaginal approach is useful, and a previous transvaginal attempt is not a contraindication for a second transvaginal attempt in closing the VVaF surgically.
DOI: 10.25345/c5rp07
title: MassIVE Reanalysis RMSV000000256.196 - CCMS ProteoCarta ModDecode reanalysis of Alcaligenes faecalis data from DeNovo Peptide Identification Deep Learning Training Set [launched by 6ad9e3cb48f54f09b77209f8b1b895a7]
title: CCMS ProteoCarta peptidoform interpretation (ModDecode) of Maestro open modification search results for Alcaligenes faecalis (RMSV000000256.191) from MSV000083150/PXD010000.
DOI: 10.6084/m9.figshare.14992356.v3
title: Setting the priorities straight - Species distribution models assist to prioritize conservation targets for the mangroves

description: <b>1.Occurrence.data:</b> Spatially rarefied occurrence data for 7 true mangroves and 3 mangrove associates, which were used in the species distribution modelling.<br><b>2.Predicted.distribution.data:</b> The number and percentage of cells predicted suitable for each species (n=10) and two species categories (true mangroves and mangrove associates) in current, past (Last Glacial Maximum and Mid-Holocene) and future (2050 and 2070) climate conditions.<br><b>3.Location.priorityConsv.data:</b> Characteristics of the three categories of priority conservation sites in form of identity of anthropogenic biome, protected areas, ecoregions and habitats. The habitat suitability for the true mangroves and mangrove associates at each of these sites in current and future climate has been provided.<br><b>4.Species.priorityConsv.data:</b> Estimates of current climatic niche traits for each of the 10 mangrove species, their position in the two-dimensional niche spaces, and priority ranking for conservation.<br>