cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11190286
title: TreeGOER: Tree Globally Observed Environmental Ranges

description: TreeGOER (Tree Globally Observed Environmental Ranges) is a database that documents the environmental ranges (minimum, maximum, median, mean and 5%, 25%, 75% and 95% quantiles) for 48,129 tree species and for 51 environmental variables, including 38 bioclimatic variables, 8 soil variables and 3 topographic variables. These ranges were calculated after cleaning occurrence records and standardizing species names with the WorldFlora R package to World Flora Online or the World Checklist of Vascular Plants for a global GBIF occurrence download of 44,267,164 occurrences (GBIF.org 2021 GBIF Occurrence Download https://doi.org/10.15468/dl.77gcvq). The 5% and 95% quantiles were calculated separately for two methods of outlier detection and for the full data set. The process of compilation of TreeGOER with 30 arc-seconds global grid layers, two examples of BIOCLIM applications that investigated the effects of climate change on global tree diversity patterns and R scripts to repeat these analyses have been described by Kindt, R. (2023). TreeGOER: A database with globally observed environmental ranges for 48,129 tree species. Global Change Biology, 00, 1–16. https://onlinelibrary.wiley.com/doi/10.1111/gcb.16914.

TreeGOER can be used in combination with the CitiesGOER database (https://doi.org/10.5281/zenodo.8175429) that documents the conditions for the same environmental variables (except elevation) for 52,602 cities with a human population ≥ 5000. An alternative to CitiesGOER is the ClimateForecasts database (https://zenodo.org/records/10776414), a database documenting the environmental conditions at the locations of 15,504 weather stations that was also integrated in the GlobalUsefulNativeTrees database (see Kindt et al. 2023). TreeGOER could also be used with the TreeGOER Global Zones atlas that can be obtained from https://doi.org/10.5281/zenodo.8252756. This high-resolution atlas includes sheets with global zones for the Climatic Moisture Index (CMI) and the number of months with average temperature > 10 degrees C (Tmo10); these are zones for which presence of the 48,129 species was documented by TreeGOER.

Changes between different versions of the databases are documented in a specific sheet in the metadata file.

The development of TreeGOER was supported by the Darwin Initiative to project DAREX001 of Developing a Global Biodiversity Standard certification for tree-planting and restoration, by Norway’s International Climate and Forest Initiative through the Royal Norwegian Embassy in Ethiopia to the Provision of Adequate Tree Seed Portfolio project in Ethiopia, and by the Green Climate Fund through the IUCN-led Transforming the Eastern Province of Rwanda through Adaptation project. When using TreeGOER in your work, cite the publication (Kindt 2023) as well as this repository using the DOI (https://doi.org/10.5281/zenodo.7922927).
DOI: 10.5281/zenodo.7922928
title: TreeGOER: Tree Globally Observed Environmental Ranges

description: <strong>TreeGOER (Tree Globally Observed Environmental Ranges)</strong> is a database that documents the environmental ranges (minimum, maximum, median, mean and 5%, 25%, 75% and 95% quantiles) for 48,129 tree species and for 51 environmental variables, including 38 bioclimatic variables, 8 soil variables and 3 topographic variables. These ranges were calculated after cleaning occurrence records and standardizing species names with the WorldFlora R package to World Flora Online or the World Checklist of Vascular Plants for a global GBIF occurrence download of 44,267,164 occurrences (GBIF.org 2021 <strong>GBIF Occurrence Download</strong> https://doi.org/10.15468/dl.77gcvq). The 5% and 95% quantiles were calculated separately for two methods of outlier detection and for the full data set. The process of compilation of TreeGOER with 30 arc-seconds global grid layers, two examples of BIOCLIM applications that investigated the effects of climate change on global tree diversity patterns and R scripts to repeat these analyses have been described by Kindt, R. (2023). <strong>TreeGOER: A database with globally observed environmental ranges for 48,129 tree species</strong>. Global Change Biology, 00, 1–16. https://onlinelibrary.wiley.com/doi/10.1111/gcb.16914. <strong>TreeGOER </strong>can be used in combination with the <strong>CitiesGOER</strong> database (https://doi.org/10.5281/zenodo.8175429) that documents the conditions for the same environmental variables (except elevation) for 52,602 cities with a human population ≥ 5000. <strong>TreeGOER</strong> could also be used with the <strong>TreeGOER Global Zones</strong> atlas that can be obtained from https://doi.org/10.5281/zenodo.8252756. This high resolution atlas includes sheets with global zones for the Climatic Moisture Index (CMI) and the number of months with average temperature &gt; 10 degrees C (Tmo10); these are zones for which presence of the 48,129 species was documented by TreeGOER. Changes between different versions of the databases are documented in a specific sheet in the metadata file. The development of TreeGOER was supported by the Darwin Initiative to project DAREX001 of <em>Developing a Global Biodiversity Standard certification for tree-planting and restoration</em>, by Norway’s International Climate and Forest Initiative through the Royal Norwegian Embassy in Ethiopia to the <em>Provision of Adequate Tree Seed Portfolio</em> project in Ethiopia, and by the Green Climate Fund through the IUCN-led <em>Transforming the Eastern Province of Rwanda through Adaptation</em> project. When using TreeGOER in your work, cite the publication (Kindt 2023) as well as this repository using the DOI (https://doi.org/10.5281/zenodo.7922927).
DOI: 10.5281/zenodo.8052331
title: TreeGOER: Tree Globally Observed Environmental Ranges

description: <strong>TreeGOER (Tree Globally Observed Environmental Ranges)</strong> is a database that documents the environmental ranges (minimum, maximum, median, mean and 5%, 25%, 75% and 95% quantiles) for 48,129 tree species and for 51 environmental variables, including 38 bioclimatic variables, 8 soil variables and 3 topographic variables. These ranges were calculated after cleaning occurrence records and standardizing species names with the WorldFlora R package to World Flora Online or the World Checklist of Vascular Plants for a global GBIF occurrence download of 44,267,164 occurrences (GBIF.org 2021 <strong>GBIF Occurrence Download</strong> https://doi.org/10.15468/dl.77gcvq). The 5% and 95% quantiles were calculated separately for two methods of outlier detection and for the full data set. The process of compilation of TreeGOER with 30 arc-seconds global grid layers, two examples of BIOCLIM applications that investigated the effects of climate change on global tree diversity patterns and R scripts to repeat these analyses have been described by Kindt, R. (2023). <strong>TreeGOER: A database with globally observed environmental ranges for 48,129 tree species</strong>. Global Change Biology, 00, 1–16. https://onlinelibrary.wiley.com/doi/10.1111/gcb.16914. <strong>TreeGOER </strong>can be used in combination with the <strong>CitiesGOER</strong> database (https://doi.org/10.5281/zenodo.8175429) that documents the conditions for the same environmental variables (except elevation) for 52,602 cities with a human population ≥ 5000. <strong>TreeGOER</strong> could also be used with the <strong>TreeGOER Global Zones</strong> atlas that can be obtained from https://doi.org/10.5281/zenodo.8252756. This high resolution atlas includes sheets with global zones for the Climatic Moisture Index (CMI) and the number of months with average temperature &gt; 10 degrees C (Tmo10); these are zones for which presence of the 48,129 species was documented by TreeGOER. Changes between different versions of the databases are documented in a specific sheet in the metadata file. The development of TreeGOER was supported by the Darwin Initiative to project DAREX001 of <em>Developing a Global Biodiversity Standard certification for tree-planting and restoration</em>, by Norway’s International Climate and Forest Initiative through the Royal Norwegian Embassy in Ethiopia to the <em>Provision of Adequate Tree Seed Portfolio</em> project in Ethiopia, and by the Green Climate Fund through the IUCN-led <em>Transforming the Eastern Province of Rwanda through Adaptation</em> project. When using TreeGOER in your work, cite the publication (Kindt 2023) as well as this repository using the DOI (https://doi.org/10.5281/zenodo.7922927).
DOI: 10.15468/dl.tc6t9e
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bangladesh",
 "GadmGid is BGD.3.17_1",
 "TaxonKey is Muscidae"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001673-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8kypes
title: Occurrence Download

description: A dataset containing 12042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-116.5 50.8,-115 50.8,-115 51.8,-116.5 51.8,-116.5 50.8))",
 "Year 2024-2025"
 ]
}

 The dataset includes 12042 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001675-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.verqy5
title: Occurrence Download

description: A dataset containing 364246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trifolium dubium Sibth.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 364246 records from 2329 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001664-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1124572
title: Images and Site Records from an Archaeological Programme of works for A43 Moulton Bypass, Northamptonshire, 2018-2019

description: This collection comprises images and site records from a programme of works carried out by MOLA (Museum of London Archaeology) between 2018 and 2019 as part of the A43 Moulton Bypass, phase 1B scheme. Significant finds included an early medieval sunken-featured building, a probable Iron Age boundary ditch, three Anglo-Saxon sunken-featured buildings and a brick and ironstone drainage system dating from at least the post-medieval period.
DOI: 10.5284/1124488
title: Images and Site Records from an Archaeological Excavation at Aston Clinton Road, Aylesbury, Buckinghamshire, 2016

description: This collection comprises images and scanned site records from an archaeological excavation on land at Aston Clinton road, Aylesbury, Buckinghamshire undertaken by MOLA Northampton between May and July 2016. A roundhouse with associated discrete features was located at the heart of the settlement, focused within the northern perimeter of the site adjacent to the east of the routeway. A series of isolated pits were also present.
DOI: 10.15468/dl.tehcj4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helianthus tuberosus Parry"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043908-241126133413365/datasets/export for details.
DOI: 10.15468/dl.d9uye8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyclothone pygmaea Jespersen & Tåning, 1926",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043909-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3f93vy
title: Occurrence Download

description: A dataset containing 468 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cipangopaludina chinensis Reeve, 1863"
 ]
}

 The dataset includes 468 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043910-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3mstx
title: Occurrence Download

description: A dataset containing 177704 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis lupus Linnaeus, 1758"
 ]
}

 The dataset includes 177704 records from 714 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043898-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v8a9p7
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dalophis imberbis (Delaroche, 1809)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 116 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043911-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6taug
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helianthus pauciflorus x tuberosus"
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043912-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytjg7q
title: Occurrence Download

description: A dataset containing 8288 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Guilandina bonduc L."
 ]
}

 The dataset includes 8288 records from 324 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043913-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxbt4w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis lupus polyomavirus 1"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043914-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.27679368
title: Measurement data for the publication <i>General NILM methodology for algorithm parametrization, optimization and performance evaluation</i> from Matthias Maier and Simon Schramm in Energies Journal.

description: Three days of aggregated data acquisition (aDAQ) from a commercial building at Munich University of Applied Sciences (MUAS), as well as of individual data acquisition (iDAQ) of from a building refrigeration plant´s cold water preparation, as csv files. The Measurement quantities voltage, active and reactive power were recorded with a resolution of 5 S/s. Furthermore, the already correlated data (see paper) are provided as .mat files.
DOI: 10.6084/m9.figshare.27679368.v1
title: Measurement data for the publication <i>General NILM methodology for algorithm parametrization, optimization and performance evaluation</i> from Matthias Maier and Simon Schramm in Energies Journal.

description: Three days of aggregated data acquisition (aDAQ) from a commercial building at Munich University of Applied Sciences (MUAS), as well as of individual data acquisition (iDAQ) of from a building refrigeration plant´s cold water preparation, as csv files. The Measurement quantities voltage, active and reactive power were recorded with a resolution of 5 S/s. Furthermore, the already correlated data (see paper) are provided as .mat files.
DOI: 10.5281/zenodo.14534940
title: UAVDB: Trajectory-Guided Adaptable Bounding Boxes for UAV Detection

description: UAVDB is a high-resolution RGB video dataset meticulously designed for UAV detection tasks across diverse scales and complex backgrounds. Comprising 10,763 training, 2,720 validation, and 4,578 test images (18,061 total) across datasets and camera configurations, it addresses key limitations of existing datasets, such as inaccurate bounding box annotations and limited diversity in environmental contexts, thereby enhancing the reliability and applicability of detection algorithms in real-world scenarios.
DOI: 10.15468/dl.372pkf
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathytoshia centroura (Mitchill, 1815)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 56 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043915-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2gcxt
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helianthus pauciflorus × tuberosus"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043917-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhq69f
title: Occurrence Download

description: A dataset containing 15779 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Naturalis Biodiversity Center (NL) - Hymenoptera",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 15779 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043916-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9m2c3
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Guilandina bonduc W.T.Aiton, 1811"
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043918-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14354228
title: Research data supporting "Synaptophysin accelerates synaptic vesicle fusion by expanding the membrane upon neurotransmitter loading"

description: Research data supporting Preobraschenski et al. "Synaptophysin accelerates synaptic vesicle fusion by expanding the membrane upon neurotransmitter loading"

Synaptic transmission is mediated by the exocytotic release of neurotransmitters stored in synaptic vesicles (SVs). SVs filled with neurotransmitters preferentially undergo exocytosis but it is unclear how this is achieved. Here we show that during transmitter loading SVs substantially increase in size, which is reversible and requires synaptophysin, an abundant membrane protein with unclear function. SVs are larger when synaptophysin is knocked out, and conversely, liposomes are smaller when reconstituted with synaptophysin. Moreover, transmitter loading of SVs accelerates fusion in vitro which is abolished when synaptophysin is lacking despite near normal transmitter uptake. We conclude that synaptophysin functions as a curvature-promoting entity in the SV membrane, allowing for major lateral expansion of the SV membrane during neurotransmitter filling, thus increasing their propensity for exocytosis.
DOI: 10.5281/zenodo.14354229
title: Research data supporting "Synaptophysin accelerates synaptic vesicle fusion by expanding the membrane upon neurotransmitter loading"

description: Research data supporting Preobraschenski et al. "Synaptophysin accelerates synaptic vesicle fusion by expanding the membrane upon neurotransmitter loading"

Synaptic transmission is mediated by the exocytotic release of neurotransmitters stored in synaptic vesicles (SVs). SVs filled with neurotransmitters preferentially undergo exocytosis but it is unclear how this is achieved. Here we show that during transmitter loading SVs substantially increase in size, which is reversible and requires synaptophysin, an abundant membrane protein with unclear function. SVs are larger when synaptophysin is knocked out, and conversely, liposomes are smaller when reconstituted with synaptophysin. Moreover, transmitter loading of SVs accelerates fusion in vitro which is abolished when synaptophysin is lacking despite near normal transmitter uptake. We conclude that synaptophysin functions as a curvature-promoting entity in the SV membrane, allowing for major lateral expansion of the SV membrane during neurotransmitter filling, thus increasing their propensity for exocytosis.
DOI: 10.15468/dl.bfdp8k
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Deltentosteus collonianus (Risso, 1820)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043920-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.stss8d
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Guilandina bonduc Griseb."
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043922-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4p3wx5
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dentex macrophthalmus (Bloch, 1791)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 27 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043923-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.