cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3603797_d2
title: Additional file 2: of A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits

description: SNPs used for the construction of the IL population. Background SNPs Sequenom-HRM: These were selected from those previously mapped in the melon genetic map used to anchor the first version of the melon genome [9]. The map position is indicated according to the map used to anchor the genome [9] as well as a new version of the genetic map [11]. The physical position in the last version of the melon genome (v3.5.1) available at [10] is indicated. The SNP and flanking sequence is included for all the markers used in the Sequenom assay, and the primers for those that were adapted to the HRM genotyping procedure are also provided. Markers that could not be accurately called in the Sequenom assay and that failed to show the expected polymorphism between the IL parents (VED and MAK) are marked as failed markers (f). SNPs in candidates: Additional set of SNPs located in candidate genes reported to be involved in sugar and ethylene metabolism. These markers were validated in [8] and had been generated in a previous resequencing study, using VED and MAK among other melon genotypes [3]. The physical position in the last version of the melon genome (v3.5.1) available at [10] is indicated. The SNP and flanking sequence is included for all the markers used in the Sequenom assay. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3603800_d1
title: Additional file 1: Table S1. of Ant mediated redistribution of a xyloglucanase enzyme in fungus gardens of Acromyrmex echinatior

description: List of qPCR primers used in this study, including primer sequences, annealing temperatures and fragment lengths in base pairs. Table S2. qPCR results of Xeg1, Ubc and GAPDH, for the two different fungal tissues, gongylidia and mycelium. Table S3. qPCR results of Xeg1, Ubc and GAPDH, for the top, middle and bottom layers and debris material from ant fungus gardens. Table S4. Xyloglucanase enzyme activity data for ant fecal fluid. Table S5. Xyloglucanase enzyme activity data for the top, middle and bottom layers and debris material from ant fungus gardens. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3603815_d5
title: Additional file 3: Table S3. of CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems

description: Nucleic sequences of fosmids from metagenomic study. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3603860_d1
title: Additional file 1: of Factors associated with self-reported health: implications for screening level community-based health and environmental studies

description: Table S1. Sociodemographic Domain; Table S2. Health Care Domain; Table S3. Health Status Domain; Table S4. Lifestyle Domain; Table S5. Clinical Indicators; Table S6. Environmental Scores/Chemicals). This file details all associations between the domain factors and poorer SRH for both binary (poor/fair versus good/very good/excellent) and ordinal 5-point scoring of SRH (1 = poor, 2 = fair, 3 = good, 4 = very good, and 5 = excellent). (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3603836_d4
title: Additional file 5: Table S5. of Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

description: Conservation analysis in Soft Rot Enterobacteriaceae (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3603836_d5
title: Additional file 1: Table S1. of Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

description: Complete list of RNA-seq detected sRNAs (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3603836_d7
title: Additional file 3: Table S3. of Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

description: List of in silico predicted sRNAs using RITs from WebGester DB. S2A: Forward strand predictions. S2B: Complementary strand predictions (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3603836_d8
title: Additional file 2: Table S2. of Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

description: Predicted transcription start sites of RNA-seq detected sRNAs (XLSX 9114Â kb)
DOI: 10.6084/m9.figshare.c.3603881_d1
title: Additional file 8: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: Validation of ChIP-seq peaks by ChIP-qPCR. Table showing the ChIP-qPCR fold changes for both wild-type and vhl mutant ChIP samples and the ratio of vhl/wt. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.28020938.v1
title: Paradisea liliastrum raw GC-MS files

description: Metabolite extraction from Paradisea liliastrum
DOI: 10.6084/m9.figshare.28020938
title: Paradisea liliastrum raw GC-MS files

description: Metabolite extraction from Paradisea liliastrum
DOI: 10.15468/dl.fuyd4n
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Insecta",
 "Geometry POLYGON ((-92.48515 14.95356, -92.39432 14.95356, -92.39432 15.04211, -92.48515 15.04211, -92.48515 14.95356))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 79 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032501-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3grrr8
title: Occurrence Download

description: A dataset containing 398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tanakius kitaharae (Jordan & Starks, 1904)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 398 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032502-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3603890_d6
title: Additional file 5: of Insights into the innate immunome of actiniarians using a comparative genomic approach

description: Alignment used for CniFL genes phylogenetic analysis. (FASTA 4Â kb)
DOI: 10.6084/m9.figshare.c.3603881_d7
title: Additional file 10: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: Comparison of zebrafish and Human data on HIF target genes. Sheet 1: collated list of HIF targets based on [65] with fish orthologues and peak positions. A similar analysis of a random sample of genes is also given, Sheet 2: Analysis of a experimentally verified peaks in well-known targets. Sheet 3: Analysis of overlap of top ChIP-seq peaks from [34], Sheet 4: Genes from SchĂśdel with peaks close to TSS, stating overlap with zebrafish orthologues with peaks close to TSS. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3603899_d3
title: Additional file 1: of Somatic drivers of B-ALL in a model of ETV6-RUNX1; Pax5
                +/â  
               leukemia

description: List of targeted exome baits. The file contains a list of genes that were captured as part of the targeted exome sequencing performed as part of this study. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.c.3603881_d8
title: Additional file 5: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: vhl ChIP sequencing peaks filtered for presence of a HRE. Filtering performed using MACS. (BED 70 kb)
DOI: 10.6084/m9.figshare.c.3603926_d1
title: Additional file 1: of Topology based identification and comprehensive classification of four-transmembrane helix containing proteins (4TMs) in the human genome

description: Contains the UniProt identifications, gene symbols, and Ensembl protein identifications for the classification of the 494 valid 4TM dataset. Also included within the table is the following information: signal peptides, topology, Pfam domains, functional classifications, review status, CCDS identifier, and gene-disease associations. (XLSX 176 kb)
DOI: 10.6084/m9.figshare.c.3603881_d9
title: Additional file 1: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: Gene Expression Changes in vhl mutant zebrafish. The list of fully-annotated genes which were differentially regulated with a fold change â Ľ 2 in vhl mutants versus wild-type at 4dpf. Contains; Probe ID, Fold Change, Log Fold Change, Unigene Description, Unigene ID and Gene Symbol. (XLSX 65 kb)
DOI: 10.15468/dl.yp9un9
title: Occurrence Download

description: A dataset containing 2390 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "StateProvince is one of (Andalucia, Cádiz, Andalucia)",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 2390 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032503-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/c889r6gc86.1
title: Monthly spatialization database of hydrological and climatic variables of Santa Catarina, Brazil

description: Spatial interpolation of Precipitation, Evapotranspiration, Temperatures (maximum, average and minimum) for the entire territory of the state of Santa Catarina, Brazil.

Atlantic Forest Biome

File format: TIFF
Coordinate system: Latitude, Longitude
Date: SIRGAS 2000

Grid: 0.0045° x 0.0045°
Period: 1961-2020
Time scale: monthly

Spatialization method:
• Inverse Distance Weighted (IDW)

Research: Doctoral thesis in Soil Science
DOI: 10.17632/2vd89dsxvs.1
title: Database of annual spatialization of hydrological and climatic variables of Santa Catarina, Brazil

description: Spatial interpolation of Precipitation, Evapotranspiration, Temperatures (maximum, average and minimum) for the entire territory of the state of Santa Catarina, Brazil.

File format: TIFF
Coordinate system: Latitude, Longitude
Datum: WGS84

Grid: 0.0045° x 0.0045°
Period: 1961-2020
Time scale: annual

Spatialization method:
• Inverse Distance Weighted (IDW)

Biome: Atlantic Forest

Research: Doctoral thesis in Soil Science
DOI: 10.17632/c4y8zbz49x.1
title: Boron and oxygen isotopes fractionation between borate minerals and fluids and its implication for ore-forming processes of borate deposits

description: Research data related to the study of Boron and oxygen isotopes fractionation between borate minerals and fluids and its implication for ore-forming processes of borate deposits.
DOI: 10.17632/c4y8zbz49x.2
title: Boron and oxygen isotopes fractionation between borate minerals and fluids and its implication for ore-forming processes of borate deposits

description: Research data related to the study of Boron and oxygen isotopes fractionation between borate minerals and fluids and its implication for ore-forming processes of borate deposits.
DOI: 10.17632/3zvt9d265g
title: NADBank 1995-2024

description: Detalles de los proyectos
DOI: 10.17632/3zvt9d265g.1
title: NADBank 1995-2024

description: Detalles de los proyectos
DOI: 10.17632/kmvv6mx43j.1
title: Tourist Attractions in Bangladesh

description: Tourist attractions in Bangladesh dataset is the information and statistics about the popular destinations and landmarks that attract tourists in Bangladesh. This dataset contains information about visitor numbers, demographics, visitor satisfaction, popular landmarks, museums, national parks, historical sites, amusement parks, and economic impact.
There are 495 sub-districts or upazilas in Bangladesh. The information regarding the upazilas was collected from the official outlet of the Bangladesh government, which is responsible for providing any official administrative information. Then, with the help of Google Place API, we gather information on attractive places on each upazila based on three keywords: points of interest, historical places, and tourist places. We collected information on about ten places for each keyword in each upazila.
The collected data was JSON-encoded. Each record contains features like title, which is the place's name, upazila name, longitude, latitude, rating, rating count, category, id, and keyword. However, the raw dataset was not in proper format with suitable information. After processing all the records by data integration, validation, feature extraction, outlier removal, and prepossessing, we finally have 13,813 records about tourist spots across Bangladesh. To increase the portability and usability on different systems, the entire dataset was also converted to the format of JSON and SQL format. The size of the SQL file is 1.98 MB and the JSON file is 5.00 MB.
DOI: 10.17632/723jdg92yn.1
title: PFAS Environmental Behavior_Holloman Lake

description: Concentrations of 17 PFAS in 112 soil, surface water, green algae, plant, and animal samples
DOI: 10.17632/cck8yxj3xw.1
title: Microscopic Image Dataset of Plant-Parasitic Nematodes

description: This dataset features microscopic images of plant-parasitic nematodes, categorized into 11 genera. It provides a valuable resource for research on nematode identification and classification, supporting the development of AI-powered identification tools. With annotated samples and diverse image perspectives, this dataset offers a foundation for advancing pest management strategies in agriculture.

Image size: 1280 x 1024 pixel 
Data format: .jpg 
Number of images: 1016 images 
Class: Xiphinema, Meloidogyne, Trichodorus, Hirschmanniella, Hoplolaimus, Criconemoides, Hemicycliophora, Radopholus, Pratylenchus, Criconema, and Helicotylenchus
Data source location: Central Java and Yogyakarta, Indonesia 

How data were acquired: 
Nematode specimens were collected from the roots of several crops, including rice, tomatoes, melons, chili, and eggplants, which exhibited clear signs of infestation, as well as from the surrounding soil. Extraction was performed using the modified Whitehead-Tray method. Observation and identification were carried out using an Olympus CX-31 light microscope at magnifications ranging from 4x to 100x. An optical system connected to both a microscope and laptop via compatible software was used to capture detailed nematode images. Identification was carried out by expert nematologist based on key morphological features—including the mouth, stylet with its knob, tail, cuticle, and the positioning of the esophagus, intestine, and reproductive organs—following the descriptions provided by Mai and Lyon (1968) and Mekete et al (2012).

This dataset supplements research article by N. H. Shabrina, R.A. Lika, S. Indarti, Deep learning models for automatic identification of plant-parasitic nematode, Artif. Intell. Agric. 7 (2023) 1–12. https://doi.org/10.1016/j.aiia.2022.12.002.

References
Mai, W.F., and Lyon, H.H. 1968. Pictorial key to the genus of plant parasitic nematodes. Third Edition. Cornell University, Ithaca, New York
Mekete T., Dababat A., Sekora N., Akyazi F., Abebe E. (comps). 2012. Identification key for agriculturally important plant-parasitic nematodes Prepared for the International Nematode Diagnosis and Identification Course 2012–A Manual for Nematology. Mexico, D.F.: CIMMYT.
DOI: 10.17632/cck8yxj3xw.2
title: Microscopic Image Dataset of Plant-Parasitic Nematodes

description: This dataset features microscopic images of plant-parasitic nematodes, categorized into 11 genera. It provides a valuable resource for research on nematode identification and classification, supporting the development of AI-powered identification tools. With annotated samples and diverse image perspectives, this dataset offers a foundation for advancing pest management strategies in agriculture.

Image size: 1280 x 1024 pixel 
Data format: .jpg 
Number of images: 1016 images 
Class: Xiphinema, Meloidogyne, Trichodorus, Hirschmanniella, Hoplolaimus, Criconemoides, Hemicycliophora, Radopholus, Pratylenchus, Criconema, and Helicotylenchus
Data source location: Central Java and Yogyakarta, Indonesia 

How data were acquired: 
Nematode specimens were collected from the roots of several crops, including rice, tomatoes, melons, chili, and eggplants, which exhibited clear signs of infestation, as well as from the surrounding soil. Extraction was performed using the modified Whitehead-Tray method. Observation and identification were carried out using an Olympus CX-31 light microscope at magnifications ranging from 4x to 100x. An optical system connected to both a microscope and laptop via compatible software was used to capture detailed nematode images. Identification was carried out by expert nematologist based on key morphological features—including the mouth, stylet with its knob, tail, cuticle, and the positioning of the esophagus, intestine, and reproductive organs—following the descriptions provided by Mai and Lyon (1968) and Mekete et al (2012).

This dataset supplements research article by N. H. Shabrina, R.A. Lika, S. Indarti, Deep learning models for automatic identification of plant-parasitic nematode, Artif. Intell. Agric. 7 (2023) 1–12. https://doi.org/10.1016/j.aiia.2022.12.002.

References
Mai, W.F., and Lyon, H.H. 1968. Pictorial key to the genus of plant parasitic nematodes. Third Edition. Cornell University, Ithaca, New York
Mekete T., Dababat A., Sekora N., Akyazi F., Abebe E. (comps). 2012. Identification key for agriculturally important plant-parasitic nematodes Prepared for the International Nematode Diagnosis and Identification Course 2012–A Manual for Nematology. Mexico, D.F.: CIMMYT.
DOI: 10.17632/svtvngmxt2.1
title: Heterogeneous Effects of Digital Technology

description: Research on the greening effects of the digital economy.The dataset includes enterprise green transformation data, digital transformation, digital technology (text analytics) and incentive-based environmental regulation DID data
DOI: 10.48323/0ay0j-rg656
title: MS_XevoTQXS_2024_June

description: MAG02AEMethod Development CoAs
DOI: 10.48323/zggaq-yq805
title: MS_XevoTQXS_2024_June

description: MAG02AEMethod Development CoAs
DOI: 10.17632/th364b58mp.1
title: LINF_100014500

description: WD domain/G-beta repeat-containing protein; Leishmania infantum
DOI: 10.17632/th364b58mp.2
title: LINF_100014500

description: LST8; Leishmania infantum (strain JPCM5)
DOI: 10.17632/hhk32y6b22.1
title: LINF_100017600

description: DnaJ domain-containing protein | JDP40 | J40; Leishmania infantum
DOI: 10.17632/hhk32y6b22.2
title: LINF_100017600

description: DnaJ domain-containing protein | JDP40 | J40; Leishmania infantum (strain JPCM5)
DOI: 10.17632/xg6x298w3b.1
title: LINF_100018400

description: PAB1-binding protein; Leishmania infantum
DOI: 10.17632/xg6x298w3b.2
title: LINF_100018400

description: PAB1-binding protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/y8vv9bsrxh
title: Pain and QOL

description: Pain and QOL
DOI: 10.17632/y8vv9bsrxh.1
title: Pain and QOL

description: Pain and QOL
DOI: 10.17632/g7vbwsxzcy.1
title: CATSA: A Wrist Worn Wearable Dataset for Stress Analysis

description: The CATSA dataset is a publicly accessible multimodal dataset comprising wearable signals designed for stress and cognitive task analysis. It primarily captures physiological responses under baseline conditions and during induced cognitive tasks from a wearable device. The dataset is organized within a root folder named CATSA, which contains 50 subfolders, each corresponding to an individual participant and labeled as subXY, where XY represents an incrementing numerical identifier. Within each participant’s folder, there are four subdirectories named Baseline, Stroop, Logic, and Sudoku, corresponding to different experimental conditions. Each of these subdirectories contains five CSV files that store data recorded by the wrist-worn Empatica E4 device, including Blood Volume Pulse (BVP), Electrodermal Activity (EDA), Accelerometer data (ACC), Body Temperature (TEMP), and Heart Rate (HR).
DOI: 10.17632/gm2sfx7d54.1
title: Supplementary fig 1. Receiver operating characteristic (ROC) curves for inflammatory markers in predicting overall survival (OS) of 85 patients with Extramammary Paget's disease

description: Neutrophil-to-lymphocyte ratio (NLR) ROC curve; platelet-to-lymphocyte ratio (PLR) ROC curve; lymphocyte-to-monocyte ratio (LMR) ROC curve; platelet-to-neutrophil ratio (PNR) ROC curve. Key metrics, including area under the curve (AUC), best cutoffs, sensitivity, and specificity, are shown within the plots.
DOI: 10.17632/gm2sfx7d54.2
title: Supplementary fig 1. Receiver operating characteristic (ROC) curves for inflammatory markers in predicting overall survival (OS) of 85 patients with Extramammary Paget's disease

description: (1A) neutrophil-to-lymphocyte ratio (NLR); (1B) platelet-to-lymphocyte ratio (PLR); (1C) lymphocyte-to-monocyte ratio (LMR); (1D) platelet-to-neutrophil ratio (PNR). Key metrics, including area under the curve
DOI: 10.17632/dfv4ft65kn
title: Aging anxiety

description: This study integrates the Fundamental Causes Theory of health and the Stress Process Theory, utilizing data from the Chinese General Social Survey (CGSS) to investigate the mechanisms through which socioeconomic status affects aging anxiety.
DOI: 10.17632/dfv4ft65kn.1
title: Aging anxiety

description: This study integrates the Fundamental Causes Theory of health and the Stress Process Theory, utilizing data from the Chinese General Social Survey (CGSS) to investigate the mechanisms through which socioeconomic status affects aging anxiety.
DOI: 10.5281/zenodo.15076517
title: RPTEC Single Cell Data
DOI: 10.5281/zenodo.15076518
title: RPTEC Single Cell Data
DOI: 10.17632/y5zczp74rb.1
title: Emerging Demand-side Flexible Resources Accelerate China’s Power System Transition towards Carbon Neutrality. Hongyi Wei et al.

description: Power system transition result data in this paper.
DOI: 10.17632/y5zczp74rb.2
title: Emerging Demand-side Flexible Resources Accelerate China’s Power System Transition towards Carbon Neutrality. Hongyi Wei et al.

description: Power system transition result data in this paper.
DOI: 10.17632/y5zczp74rb.3
title: Emerging Demand-side Flexible Resources Accelerate China’s Power System Transition towards Carbon Neutrality. Hongyi Wei et al.

description: Power system transition result data related to this paper.
DOI: 10.15468/dl.3hs744
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Asia",
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Micrixalus herrei Myers, 1942",
 "Year 2000-2025"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011780-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15124131
title: Inverse modeling of herbicide fate and transport in rice paddies under varying water management

description: This repository contains all the scripts used in the reaseach article "Inverse modeling of herbicide fate and transport in rice paddies under varying water management", submitted to Science of the Total Environment. These R scripts are used to perform calibrate the PCPF-1R model, a pesticide fate and transport model. The input necessary to run the model (water balance and initial parameter values) are also provided. Note that the model itself can be requested to Kondo Kei.