cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3626252_d3
title: Additional file 4: Table S4. of Mycoplasma non-coding RNA: identification of small RNAs and targets

description: Small RNA (sRNA) prediction in Mycoplasma flocculare ATCC 27716. (XLSX 53Â kb)
DOI: 10.6084/m9.figshare.c.3626225_d6
title: Additional file 5: of A transcriptome-based global map of signaling pathways in the ovarian cancer microenvironment associated with clinical outcome

description: Source code. (TXT 9 kb)
DOI: 10.6084/m9.figshare.c.3626252_d4
title: Additional file 12: Table S12. of Mycoplasma non-coding RNA: identification of small RNAs and targets

description: Primers sequence from M. hyopneumoniae genome. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3626252_d5
title: Additional file 5: Table S5. of Mycoplasma non-coding RNA: identification of small RNAs and targets

description: Mycoplasma flocculare sRNAs sequence predicted. (XLSX 51Â kb)
DOI: 10.6084/m9.figshare.c.3626252_d6
title: Additional file 8: Table S8. of Mycoplasma non-coding RNA: identification of small RNAs and targets

description: Target prediction for the sRNAs from M. hyopneumoniae. (XLS 17737Â kb)
DOI: 10.6084/m9.figshare.c.3626252_d7
title: Additional file 7: Table S7. of Mycoplasma non-coding RNA: identification of small RNAs and targets

description: Mycoplasma hyorhinis sRNAs sequence predicted. (XLSX 51Â kb)
DOI: 10.15468/dl.pz2kns
title: Occurrence Download

description: A dataset containing 8909 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Misgurnus anguillicaudatus (Cantor, 1842)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 8909 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033243-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3626252_d9
title: Additional file 1: Table S1. of Mycoplasma non-coding RNA: identification of small RNAs and targets

description: Small RNA (sRNA) predicted in Mycoplasma hyopneumoniae 7448. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.c.3626252_d10
title: Additional file 10: Table S10. of Mycoplasma non-coding RNA: identification of small RNAs and targets

description: Target prediction for the sRNAs from M. hyorhinis. (XLS 1925Â kb)
DOI: 10.6084/m9.figshare.c.3626261_d6
title: Additional file 11: Table S3. of A DUF-246 family glycosyltransferase-like gene affects male fertility and the biosynthesis of pectic arabinogalactans

description: ELISA absorbance values for RG-I fractions from NbPAGR-silenced and virus-infected, control N. benthamiana plants as well as 35S::PAGR-YFP and wild type Arabidopsis plants probed with a diverse array of plant cell wall glycan-directed monoclonal antibodies. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3626297_d1
title: Additional file 1 of GOTA: GO term annotation of biomedical literature

description: Benchmark set. Detailed list of PubMed identifiers and related GO annotations used for the experimental tests. (GZ 2263 kb)
DOI: 10.6084/m9.figshare.c.3626282_d7
title: Additional file 15: of The parameter sensitivity of random forests

description: Variable importance ranks according to ntree value. The ranks for the default parameters with unique n tree values as column heads and sequencing quality metrics as row heads. The ranks stabilize at n tree  = 10,000. Using this criteria, the variable identified as the most important was “Average reads/starts” in 40 % of samples, whereas, [6] identified “% bases ≥ 8×” as the most important variable using the cforest algorithm. Below n tree 1,000, “% bases ≥ 8×” was ranked as the most important variable in 40 % of samples. Although greater n tree values may lead to more consistent rankings for variable importance, these values may become more biased through sampling with replacement methods [20]. (CSV 667 bytes)
DOI: 10.6084/m9.figshare.c.3626300_d1
title: Additional file 4: of SMRT sequencing of the Campylobacter coli BfR-CA-9557 genome sequence reveals unique methylation motifs

description: Prodigal annotation of the C. coli BFR-CA-9557. Annotation of the C. coli BFR-CA-9557 genome using the Prodigal/Prokka annotation pipeline. (XLS 727 kb)
DOI: 10.6084/m9.figshare.c.3626282_d9
title: Additional file 4: of The parameter sensitivity of random forests

description: Pairwise t-test results for n tree intra-parameter groups for the low p/n data. All p-values were adjusted using a Benjamini-Hochberg procedure. The only n tree value found to differ from every other n tree group was 10. (TXT 456 bytes)
DOI: 10.6084/m9.figshare.c.3626282_d10
title: Additional file 8: of The parameter sensitivity of random forests

description: AUC results for high p/n data. Validation results for all high p/n models (n = 1000) using the MSKCC data, DFCI data, and combined MSKCC and DFCI data. The AUC results and ranks are provided for each combination of n tree , m try and sampsize parameters. Lower ranks represent higher model performance with 1 representing the most accurate model and 1000 representing the worst performing model. Logical columns are present to indicate whether a parameter set performed better than the default or well across all validation sets. Model performance was defined as good if the parameter set resulted in an AUC of &gt; 0.6 across all validation sets. The default settings (n tree  = 500, m try  = 110, sampsize = 255) are found on row 596 of the table. (CSV 28 kb)
DOI: 10.6084/m9.figshare.c.3626300_d2
title: Additional file 3: of SMRT sequencing of the Campylobacter coli BfR-CA-9557 genome sequence reveals unique methylation motifs

description: RAST annotation of the C. coli BFR-CA-9557. Annotation of the C. coli BFR-CA-9557 genome using the rapid annotation using subsystem technology platform (RAST, http://rast.nmpdr.org ). (XLS 3605 kb)
DOI: 10.6084/m9.figshare.c.3626312_d1
title: Additional file 1: Table S1. of A new polymorphism on chromosome 6 associated with bolting tendency in sugar beet

description: Information on 192 SNPs used in the study. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3626279_d8
title: Additional file 7: Table S4. of Defining the nitrogen regulated transcriptome of Mycobacterium smegmatis using continuous culture

description: A list of differentially expressed intergenic and antisense-strand regions. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3626282_d12
title: Additional file 17: of The parameter sensitivity of random forests

description: Parameter grid for predicting performance. A summary table of parameters that were used to perform model tuning for predicting AUC using a subset of parameters, n tree , m try and sampsize. A total of 162 parameters were used in model tuning and the optimal parameters (n tree  = 200, m try  = 2, sampsize = 200) were selected to fit the final model. (CSV 124 bytes)
DOI: 10.6084/m9.figshare.c.3626354_d4
title: Additional file 2: of Putative type 1 thymidylate synthase and dihydrofolate reductase as signature genes of a novel bastille-like group of phages in the subfamily Spounavirinae

description: The Phamerator database for this study (61phages).
DOI: 10.6084/m9.figshare.c.3626369_d5
title: Additional file 1: of The diversification of the basic leucine zipper family in eukaryotes correlates with the evolution of multicellularity

description: Table S1. bZIP dataset. First tab contains databases information, method of protein retrieval and references. Following tabs include the full list of the protein sequences used in this study, accession information and, when relevant, family assignment. Table S2. Statistical support for family assignment. We reported the boostrap values (NJ: neighbor-joining and ML: maximum likelihood) and posterior probabilities (BI: Bayesian inference) that supported the assignment of each protein to a bZIP family, listed on the left. Taxa are listed at the top. (ZIP 151 kb)
DOI: 10.6084/m9.figshare.c.3626396_d1
title: Additional file 5: of Evidence for the role of transposons in the recruitment of cis-regulatory motifs during the evolution of C4 photosynthesis

description: Potentially recruited network-derived motifs detected within transcription factor binding sites (TFBS). (XLSX 27 kb)
DOI: 10.15468/dl.s2uthf
title: Occurrence Download

description: A dataset containing 160014 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is Natural History Museum, Vienna - Herbarium W"
 ]
}

 The dataset includes 160014 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033239-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3626396_d2
title: Additional file 4: of Evidence for the role of transposons in the recruitment of cis-regulatory motifs during the evolution of C4 photosynthesis

description: Candidate acceptors and donors of the recruited network-derived motifs, along with a brief description of each acceptors. Only those donor genes that were not farther than 10 genes from the acceptor gene are listed. (XLSX 110 kb)
DOI: 10.6084/m9.figshare.c.3626396_d4
title: Additional file 2: of Evidence for the role of transposons in the recruitment of cis-regulatory motifs during the evolution of C4 photosynthesis

description: Potentially recruited network-derived motifs related to C4 photosynthesis. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3626396_d6
title: Additional file 3: of Evidence for the role of transposons in the recruitment of cis-regulatory motifs during the evolution of C4 photosynthesis

description: Potentially recruited network-derived motifs located within the overlapping region of transposable elements and the promoter region of the donor gene. (XLSX 1074 kb)
DOI: 10.5281/zenodo.14288534
title: Battery Test Matrix

description: The battery test matrix gives a comprehensive overview of all relevant EU standards and regulations for the FASTEST project's three use cases. It indicates the hierarchy level it focuses on cell, module, or pack level.
DOI: 10.5281/zenodo.14288533
title: Battery Test Matrix

description: The battery test matrix gives a comprehensive overview of all relevant EU standards and regulations for the FASTEST project's three use cases. It indicates the hierarchy level it focuses on cell, module, or pack level.
DOI: 10.5281/zenodo.14444407
title: Results of the Termination Competition 2023 - Raw Data
DOI: 10.5281/zenodo.14444408
title: Results of the Termination Competition 2023 - Raw Data
DOI: 10.6084/m9.figshare.c.3626441_d5
title: Additional file 7: of Predicting the geographical distributions of the macaque hosts and mosquito vectors of Plasmodium knowlesi malaria in forested and non-forested areas

description: Macaca fascicularis data. Each record of M. fascicularis occurrence is provided with a location and date. Duplicate records within a calendar year have been removed. Locations are classed as points (defined as &lt;25Â km2) or polygons (defined as &gt;25Â km2). (XLSX 322Â kb)
DOI: 10.5281/zenodo.14412250
title: eCARLA-scenes: A synthetically generated dataset for event-based optical flow prediction

description: This repository hosts a synthetic event-based optical flow dataset, meticulously designed to simulate diverse environments under varying weather conditions using the CARLA simulator. The dataset is specifically tailored for autonomous field vehicles, featuring event streams, grayscale images, and corresponding ground truth optical flow.

In addition to the dataset, the accompanying repository provides a user-friendly pipeline for generating custom datasets, including optical flow displacements and grayscale images. The generated data leverages the optimized eWiz framework, ensuring efficient storage, access, and processing.

The data generation pipeline can be utilized by cloning the eCARLA-scenes repository. Whether you're a researcher or developer, this resource is an ideal starting point for advancing event-based vision systems in real-world autonomous applications.
DOI: 10.5281/zenodo.14412251
title: eCARLA-scenes: A synthetically generated dataset for event-based optical flow prediction

description: This repository hosts a synthetic event-based optical flow dataset, meticulously designed to simulate diverse environments under varying weather conditions using the CARLA simulator. The dataset is specifically tailored for autonomous field vehicles, featuring event streams, grayscale images, and corresponding ground truth optical flow.

In addition to the dataset, the accompanying repository provides a user-friendly pipeline for generating custom datasets, including optical flow displacements and grayscale images. The generated data leverages the optimized eWiz framework, ensuring efficient storage, access, and processing.

The data generation pipeline can be utilized by cloning the eCARLA-scenes repository. Whether you're a researcher or developer, this resource is an ideal starting point for advancing event-based vision systems in real-world autonomous applications.
DOI: 10.5281/zenodo.14444681
title: Results of the Termination Competition 2024 - Raw Data
DOI: 10.5281/zenodo.14444682
title: Results of the Termination Competition 2024 - Raw Data
DOI: 10.6084/m9.figshare.c.3626465_d2
title: Additional file 2 of Modelling with ANIMO: between fuzzy logic and differential equations

description: ANIMOmodels and data for the case studies. (ZIP 152 kb)
DOI: 10.6084/m9.figshare.c.3626471_d2
title: Additional file 6: of Comparative genomics of Beauveria bassiana: uncovering signatures of virulence against mosquitoes

description: Additional_file_6.xlsx. Fruiting body formation from isolates of Beauveria bassiana with different mating types. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3626471_d3
title: Additional file 1: of Comparative genomics of Beauveria bassiana: uncovering signatures of virulence against mosquitoes

description: Summary of the genome quality benchmarks performed with BUSCO. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3626441_d15
title: Additional file 9: of Predicting the geographical distributions of the macaque hosts and mosquito vectors of Plasmodium knowlesi malaria in forested and non-forested areas

description: Macaca leonina data. Each record of M. leonina occurrence is provided with a location and date. Duplicate records within a calendar year have been removed. Locations are classed as points (defined as &lt;25Â km2) or polygons (defined as &gt;25Â km2). (XLSX 63Â kb)
DOI: 10.15468/dl.nf3wdu
title: Occurrence Download

description: A dataset containing 580 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-68.85802 -32.86844,-68.86099 -32.88343,-68.85209 -32.88383,-68.84246 -32.88576,-68.83781 -32.88704,-68.83012 -32.88904,-68.82724 -32.88121,-68.82596 -32.87664,-68.82187 -32.8748,-68.82211 -32.86846,-68.83903 -32.86758,-68.84937 -32.86814,-68.85802 -32.86844))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 580 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033246-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3626471_d5
title: Additional file 5: of Comparative genomics of Beauveria bassiana: uncovering signatures of virulence against mosquitoes

description: Summary of genes of Bb8028 that under positive selection. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3626471_d6
title: Additional file 3: of Comparative genomics of Beauveria bassiana: uncovering signatures of virulence against mosquitoes

description: Summary of the unique genes of Bb8028. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3626489_d1
title: Additional file 1: of Factors influencing the time between onset of illness and specimen collection in the diagnosis of non-pregnancy associated listeriosis in England and Wales

description: Data of non-pregnancy associated a listeriosis. (XLSX 94Â kb)
DOI: 10.6084/m9.figshare.c.3626525_d3
title: Additional file 6: Table S5. of Farewell to GBM-O: Genomic and transcriptomic profiling of glioblastoma with oligodendroglioma component reveals distinct molecular subgroups

description: Expression values for select genes. (XLSX 148 kb)
DOI: 10.6084/m9.figshare.c.3626525_d5
title: Additional file 2: Table S2. of Farewell to GBM-O: Genomic and transcriptomic profiling of glioblastoma with oligodendroglioma component reveals distinct molecular subgroups

description: Targeted amplicon DNA sequencing. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3626525_d6
title: Additional file 1: Table S1. of Farewell to GBM-O: Genomic and transcriptomic profiling of glioblastoma with oligodendroglioma component reveals distinct molecular subgroups

description: Targeted amplicon DNA sequencing coding exons. (XLSX 91 kb)
DOI: 10.6084/m9.figshare.c.3626552_d4
title: Additional file 1: Table S1. of Reciprocal changes in DNA methylation and hydroxymethylation and a broad repressive epigenetic switch characterize FMR1 transcriptional silencing in fragile X syndrome

description: This table summarizes information for the eight FXS patients with the clinical parameters (age, ABC-C score) and molecular readouts (methylation status, number of repeats, (h)MeDIP-qPCR data, ChIP-qPCR data). (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3626573_d1
title: Additional file 2: of Examining national and district-level trends in neonatal health in Peru through an equity lens: a success story driven by political will and societal advocacy

description: Dataset used for the main analyses of this paper. (DTA 259 kb)
DOI: 10.6084/m9.figshare.28023860
title: Stationsbuch_Gibraltar paper.xlsx

description: leptocephalus catch data
DOI: 10.6084/m9.figshare.28023860.v1
title: Stationsbuch_Gibraltar paper.xlsx

description: leptocephalus catch data
DOI: 10.6084/m9.figshare.c.3626603_d2
title: Additional file 2: of Self-perception and knowledge of evidence based medicine by physicians

description: Spreadsheet Self-perception and knowledge of EBM. (XLSX 87 kb)
DOI: 10.6084/m9.figshare.c.3626612_d1
title: Additional file 1: of Particulate-steroid betamethasone added to ropivacaine in interscalene brachial plexus block for arthroscopic rotator cuff repair improves postoperative analgesia

description: This is raw data of our clinical research. This file includes all our data of demographic data, primary outcome and secondary outcome. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3626624_d1
title: Additional file 1: of Peritonitis in peritoneal dialysis patients in Japan: a 2013 retrospective questionnaire survey of Japanese Society for Peritoneal Dialysis member institutions

description: Questionnaire regarding peritonitis. (XLSX 17 kb)
DOI: 10.15468/dl.34nb3y
title: Occurrence Download

description: A dataset containing 15230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)",
 "Country is Mexico",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 15230 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033248-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.awedqc
title: Occurrence Download

description: A dataset containing 33674 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is June",
 "OccurrenceStatus is Present",
 "TaxonKey is Trifolium repens L.",
 "Year 2022-2024"
 ]
}

 The dataset includes 33674 records from 246 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033247-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3626699_d1
title: Additional file 7: of Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species

description: Full CentriMo results. A single interactive HTML file containing all results from the CentriMo analysis. (HTML 795Â kb)
DOI: 10.6084/m9.figshare.c.3626699_d2
title: Additional file 10: of Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species

description: Windowed FIMO results. Processed results of FIMO analysis with 10Â kb windows. (XLS 81Â kb)
DOI: 10.6084/m9.figshare.c.3626708_d1
title: Additional file 3: of Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon

description: Quality control result for RNA-seq experiment. The file contains QC result of the RNA-seq experiment. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3626708_d2
title: Additional file 2: of Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon

description: Gene expression in the qRT-PCR. Normalized gene expression is included in the file. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3626699_d3
title: Additional file 6: of Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species

description: CentriMo input sequences. The 600Â bp 5â   flanking sequences used in the CentriMo analysis. (TXT 10Â kb)
DOI: 10.6084/m9.figshare.c.3626711_d1
title: MOESM4 of Significant geographical differences in prevalence of mutations associated with Plasmodium falciparum and Plasmodium 
                     vivax drug resistance in two regions from Papua New Guinea

description: Additional file 4: Table S4. Pvdhfr, pvdhps and pvmdr1 genotypes prevalence in all P. vivax infections.
DOI: 10.5281/zenodo.14415603
title: Test1234 - Figure 3

description: Test1234 - Just figure files for the Figure 3 of the mannequin paper
DOI: 10.6084/m9.figshare.c.3626699_d4
title: Additional file 4: of Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species

description: Sequence of the SPCI. The sequence of the SPCI from human and mouse. (TXT 250 bytes)
DOI: 10.6084/m9.figshare.c.3626708_d4
title: Additional file 1: of Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon

description: RNA-seq analysis results. The spreadsheet file contains statistical analysis results including FDR adjusted P-values of the 2-way ANODEV and Fisherâ  s exact test as well as gene annotation. (XLSX 1795 kb)
DOI: 10.6084/m9.figshare.c.3626711_d2
title: MOESM1 of Significant geographical differences in prevalence of mutations associated with Plasmodium falciparum and Plasmodium 
                     vivax drug resistance in two regions from Papua New Guinea

description: Additional file 1: Table S1. Sequences of PCR primers.
DOI: 10.6084/m9.figshare.c.3626699_d5
title: Additional file 1: of Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species

description: Sry coding sequences. (TXT 12Â kb)
DOI: 10.6084/m9.figshare.c.3626723_d1
title: MOESM1 of Evaluation of the biomarker candidate MFAP4 for non-invasive assessment of hepatic fibrosis in hepatitis C patients

description: Additional file 1. Clinical cohort characteristics and MFAP4 serum levels.
DOI: 10.6084/m9.figshare.c.3626711_d3
title: MOESM2 of Significant geographical differences in prevalence of mutations associated with Plasmodium falciparum and Plasmodium 
                     vivax drug resistance in two regions from Papua New Guinea

description: Additional file 2: Table S2. Sequences of new LDR primers.