cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bfjtun
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tantilla cuniculator Smith, 1939"
 ]
}

 The dataset includes 12 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032679-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3603815_d1
title: Additional file 6: Table S4. of CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems

description: GHs differentially expressed in enriched microbial consortium from cattle rumen microbiome between day 3 and day 5. (XLSX 349 kb)
DOI: 10.6084/m9.figshare.c.3603797_d3
title: Additional file 6: of A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits

description: Correlation coefficient (p
DOI: 10.6084/m9.figshare.c.3603818_d1
title: Additional file 1: of Verification of microRNA expression in human endometrial adenocarcinoma

description: Pick-&-Mix microRNA PCR panel list. (XLS 30 kb)
DOI: 10.6084/m9.figshare.c.3603797_d4
title: Additional file 3: of A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits

description: Graphical genotype of the 27 ILs selected in this study for agronomic characterization in three trials. Rows from top to bottom: marker names, melon chromosome, genetic position according to [9] for the background markers (the SNPs located in candidate genes are not mapped and are located according to their physical position indicated in Additional file 2), and the SNP allele (VED/MAK). Green boxes indicate MAK homozygous introgressions, and blue lines VED genetic background. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3603797_d5
title: Additional file 5: of A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits

description: List of all QTLs detected with the Dunnet’s test in at least two of the three trials performed with the selected IL collection. Abbreviated trait name as in Additional file 4, QTL name, chromosome, QTL position (cM) and flanking markers, according to the phenotype of overlapping lines, number of trials in which the QTL was detected, MAK effect relative to the VED parental (%) with positive/negative effects indicating that MAK alleles increase/decrease the value of the trait, IL introgression position (cM) and flanking markers. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3603818_d2
title: Additional file 2: of Verification of microRNA expression in human endometrial adenocarcinoma

description: Normalized expression values. (XLS 71 kb)
DOI: 10.6084/m9.figshare.c.3603815_d3
title: Additional file 2: Table S2. of CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems

description: Summary of probes sequences on the CAZyChip, BC_scores and the accession number of associated gene. (XLSX 8992 kb)
DOI: 10.6084/m9.figshare.c.3603815_d4
title: Additional file 1: Table S1. of CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems

description: Primers sequences used for real-time qPCR quantification. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3603836_d1
title: Additional file 6: Table S6. of Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

description: Confirmation of RT-PCR amplicons by sequencing and BLASTn against respective sRNA sequences (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3603839_d1
title: Additional file 1: of HybriFree: a robust and rapid method for the development of monoclonal antibodies from different host species

description: Sequences of the primers used in VH and VL cDNA amplification for scFv-Fc construction. This file contains primer sequences used in the study for amplification of chicken, mouse or rabbit VH and VL domain cDNAs. Additional 5â   nucleotides forming the overlapping region with the vector for CPEC cloning or the coding sequence of the flexible linker between the VH and VL domains are indicated. In addition, proportion of each primer in the cocktail is indicated. (XLSX 12 kb)
DOI: 10.15468/dl.ngqf3r
title: Occurrence Download

description: A dataset containing 5135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Riodinidae"
 ]
}

 The dataset includes 5135 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032680-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3603947_d2
title: MOESM1 of Enhancing antibody folding and secretion by tailoring the Saccharomyces cerevisiae endoplasmic reticulum

description: Additional file 1. Results from the screening process for all the strains with single gene additions, divided by the different experimental conditions. Values without defined gene or promoter are the strain background measurements for each conditions. The normalization of samples is always done to the background strain values from the same condition. Specific product yield is defined as antibody titer (denoted [AB]) divided by OD600-value. SD is an abbreviation for standard deviation. The values are means from three biological and two technical replicates.
DOI: 10.6084/m9.figshare.c.3603881_d12
title: Additional file 14: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: Details of primers used in ChIP-qPCR for the epo -HRE. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3603947_d3
title: MOESM6 of Enhancing antibody folding and secretion by tailoring the Saccharomyces cerevisiae endoplasmic reticulum

description: Additional file 6. List of oligonucleotides used in this study. All sequences of oligonucleotides used in this work are shown. Oligonucleotides 1â  6 are for DNA integration into the yeast genome and for its confirmation. 7â  14 were used for placement of PPDI1 and PKAR2 into the vector backbone, 15â  36 were used for generation of the overexpression plasmids of the various folding factors. Finally 37 and 38 were used for ACT1 qPCR.
DOI: 10.6084/m9.figshare.c.3603881_d13
title: Additional file 12: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: The overlap between non-HRE ChIP peaks in vhl mutant and wild-type samples. Filtering performed manually using the RCGTG motif. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3603947_d4
title: MOESM4 of Enhancing antibody folding and secretion by tailoring the Saccharomyces cerevisiae endoplasmic reticulum

description: Additional file 4. Overview of the mean fold-changes for all the strains with double gene additions. For each analyzed gene pair the mean fold-changes in OD600, in IgG titer, and in specific product yield are shown. Averages were calculated from fold-changes that were first compared to the respective wild-type samples.
DOI: 10.6084/m9.figshare.c.3603953_d4
title: Additional file 3: Table S3. of Comparative transcriptome investigation of global gene expression changes caused by miR156 overexpression in Medicago sativa

description: Full list of the components included in cellular component, biological process and molecular function. The full list of the GO terms that correspond to the differentially expressed genes in two genotypes of miR156OE alfalfa plants compared to WT. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3603881_d14
title: Additional file 3: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: The complete list of gene ontology terms found by DAVID. Using data found in Additional file 2, DAVID was used to assign gene ontology to genes using the Agilent zebrafish background and Unigene ID as identifier. Number of genes associate with each term, p-value and Benjamini correction are shown. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3603962_d1
title: Additional file 1: Table S1. of Identification of prohormones and pituitary neuropeptides in the African cichlid, Astatotilapia burtoni

description: Location and accession numbers of identified A. burtoni prohormone and related genes. Genome scaffold locations and identities of supporting transcriptome data for all predicted A. burtoni prohormones and protein convertases. (CSV 27Â kb)
DOI: 10.6084/m9.figshare.c.3603953_d5
title: Additional file 2: Table S2. of Comparative transcriptome investigation of global gene expression changes caused by miR156 overexpression in Medicago sativa

description: Differentially expressed genes with significant fold change detected between WT and two miR156OE genotypes (A11and A17). Differentially expressed genes between WT and the two miR156OE genotypes A11a and A17. (XLSX 1067Â kb)
DOI: 10.6084/m9.figshare.c.3603962_d2
title: Additional file 2: Text S1. of Identification of prohormones and pituitary neuropeptides in the African cichlid, Astatotilapia burtoni

description: Predicted A. burtoni prohormone and related sequences in FASTA format. All A. burtoni prohormone and protein convertase sequences and names as predicted by in silico search. (FA 44Â kb)
DOI: 10.6084/m9.figshare.c.3603947_d6
title: MOESM5 of Enhancing antibody folding and secretion by tailoring the Saccharomyces cerevisiae endoplasmic reticulum

description: Additional file 5. Result from the frequency analysis showing the strains in the 95th and 5th percentile of individual measurements of specific product yield in each temperature and strain background. To determine which strains were enriched among the highest and lowest values of specific product yield, we conducted a frequency analysis for each strain background, separately for each temperature. Frequency represents the absolute count of measurements from the strain inside the percentile and the relative frequency is the frequency normalized to the total count of measurements in the percentile. P values were calculated with Wilcoxon signed rank test using the respective background strain measurements in the same temperature as the reference.
DOI: 10.6084/m9.figshare.c.3603962_d3
title: Additional file 4: Table S3. of Identification of prohormones and pituitary neuropeptides in the African cichlid, Astatotilapia burtoni

description: A. burtoni pituitary peptides identified from tandem MS. Sequences and protein assignments of pituitary peptides detected by tandem MS. (CSV 87Â kb)
DOI: 10.6084/m9.figshare.c.3603881_d15
title: Additional file 6: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: Unfiltered ChIP sequencing peaks for wild-type. (BED 56 kb)
DOI: 10.6084/m9.figshare.c.3603947_d7
title: MOESM7 of Enhancing antibody folding and secretion by tailoring the Saccharomyces cerevisiae endoplasmic reticulum

description: Additional file 7. List of all the plasmids in our overexpression library. Overview of all ER-resident protein expression plasmids used in this study. Original name, promoter, expressed gene and the corresponding auxotrophic marker are mentioned. All plasmids contain the cyc1 terminator.
DOI: 10.15468/dl.zwwdmg
title: Occurrence Download

description: A dataset containing 2134 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Pycnogonida collection of the Shirshov Institute of Oceanology, Laboratory of Ocean Benthic Fauna"
 ]
}

 The dataset includes 2134 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032681-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604064_d3
title: Additional file 2: Table S1: of Disrupted ADP-ribose metabolism with nuclear Poly (ADP-ribose) accumulation leads to different cell death pathways in presence of hydrogen peroxide in procyclic Trypanosoma brucei

description: PARP inhibitor like compounds tested. (XLSX 12 kb)
DOI: 10.15468/dl.6m8c7z
title: Occurrence Download

description: A dataset containing 107325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nymphalidae"
 ]
}

 The dataset includes 107325 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032672-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604079_d1
title: Additional file 1: of Thigh abscess and necrotizing fasciitis following an inside-out transobturator tape intervention: a case report

description: Laboratory abnormalyties during patient care. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3604163_d7
title: Additional file 2: of More comprehensive forensic genetic marker analyses for accurate human remains identification using massively parallel DNA sequencing

description: Ancestry-informative SNP results for 140-year-old skeletal remains from Deadwood, Dakota using the A) Illumina® ForenSeq™ panel and B) HID-Ion AmpliSeq™ Ancestry Panel. Concordant results for the 53 ancestry-informative SNPs that were common between the two assays were used to generate a composite AIMS profile (C). (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3604211_d2
title: Additional file 1: of Health promoting practices and personal lifestyle behaviors of Brazilian health professionals

description: Project GUIA’s physicians and nurses survey and community health workers survey. (ZIP 3240 kb)
DOI: 10.6084/m9.figshare.c.3604220_d1
title: Additional file 1: of Burden of stroke attributable to selected lifestyle risk factors in rural South Africa

description: CRA methodology as implemented in Excel for Agincourt sub-district, South Africa. (XLSX 643 kb)
DOI: 10.6084/m9.figshare.c.3604349_d2
title: Additional file 5: of Methylome analysis for spina bifida shows SOX18 hypomethylation as a risk factor with evidence for a complex (epi)genetic interplay to affect neural tube development

description: Table S1â  S10. (XLSX 1175 kb)
DOI: 10.6084/m9.figshare.c.3604373_d1
title: Additional file 1: Table S1. of Immune response in adverse reactions to metal debris following metal-on-metal total hip arthroplasty

description: Lymphocyte stimulation test and dominant lymphocytes. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3604379_d1
title: Additional file 1: of Influence of light-curing distance on degree of conversion and cytotoxicity of etch-and-rinse and self-etch adhesives

description: Data for Statistics Lunghi. Raw data supporting the findings and conclusion of the present study. Raw data for the extracellularly released LDH activity from dental pulp cells and gingival fibroblasts as well as raw data for the DC of conversion in the different groups. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3604469_d2
title: Additional file 1: Figure S1. of Evolutionary comparison of prenylation pathway in kinetoplastid Leishmania and its sister Leptomonas

description: Multiple sequence alignment of FTase (α-subunit) of Leishmania donovani (accession number XP_003862625.1, putative protein) with FTase (α-subunit) of Leishmania major (accession number XP_003722277.1, putative protein), Leishmania infantum (accession number XP_001466722.1, putative protein) and its sister Leptomonas (contig_2654, putative protein) showing conserved regions (red colored) based on percentage identity. Figure S2. Multiple sequence alignment of FTase (β-subunit) of Leishmania donovani (accession number XP_003861732.1) with FTase (β-subunit) of Leishmania major (accession number XP_001684151), Leishmania infantum (accession number XP_001470492) and its sister Leptomonas (contig_1135) showing conserved regions (red colored) based on percentage identity. Figure S3. Multiple sequence alignment of GGTase-II (α-subunit) of Leishmania donovani (accession number XM_001468149) with GGTase-II (α-subunit) of Leishmania major (accession number XM_001685808) and Leishmania infantum (accession number XP_001468186) showing conserved regions (red colored) based on percentage identity. Its sister Leptomonas has no α -subunit of GGTase-II. Figure S4. Multiple sequence alignment of GGTase-II (β-subunit) of Leishmania donovani (accession number XP_003864545) with GGTase-II (β-subunit) of Leishmania major (accession number XP_001686510) and Leishmania infantum (accession number XP_001468743) showing conserved regions (red colored) based on percentage identity. Figure S5. Alignment of various Leishmania donovani Rab protein sequences showing sequence similarities and domain conservation among them colored red based in their percentage similarity. Figure S6. Alignment of various Leptomonas Rab protein sequences showing sequence similarities and domain conservation among them colored red based in their percentage similarity. Figure S7. Phylogenetic relationship among Rab sequences of L. major, L. infantum, L. donovani and Leptomonas which is based on multiple sequence alignment (ClustalW algorithm in MEGALIGN with 1000 bootstraps). Figure S8. Circos plot was generated using Circos version 0.60, which is used to determine the similarity between Rab genes of Leishmania donovani and its sister Leptomonas. Where cyan color for all Rabs protein obtained from Leptomonas genome and green color for all Rabs protein obtained from Leishmania donovani genome. Other colors for each different Rabs. (ZIP 81526 kb)
DOI: 10.6084/m9.figshare.26356939
title: Data for: "Dynamics of thermal tolerance plasticity across fish species and life stages"

description: This project contains data and metadata for the publication "Dynamics of thermal tolerance plasticity across fish species and life stages" accepted and to be published in <i>Journal of Thermal Biology</i> (TB-D-24-00433). DOI to be included. <br><br>We assessed the thermal tolerance plasticity in four species of fish (goldsinny wrasse, three-spined stickleback, European flounder and zebrafish) and two life stages of zebrafish (juveniles and adults). We acclimated fish to a warm treatment (+5°C or +6°C) and measured CTmax or CTmin after different acclimation durations (3h, 6h, 24h, 4 days, 10 days and also 21 days for zebrafish). <br><br>The Main_data file contains all data used in the publication. The metadata file gives additional information on the columns of "Main_data". Different subset files were done (.txt) to facilitate with making figures. The code used for analyses and making figures is included as an R file.
DOI: 10.6084/m9.figshare.26356939.v1
title: Data for: "Dynamics of thermal tolerance plasticity across fish species and life stages"

description: This project contains data and metadata for the publication "Dynamics of thermal tolerance plasticity across fish species and life stages" accepted and to be published in <i>Journal of Thermal Biology</i> (TB-D-24-00433). DOI to be included. <br><br>We assessed the thermal tolerance plasticity in four species of fish (goldsinny wrasse, three-spined stickleback, European flounder and zebrafish) and two life stages of zebrafish (juveniles and adults). We acclimated fish to a warm treatment (+5°C or +6°C) and measured CTmax or CTmin after different acclimation durations (3h, 6h, 24h, 4 days, 10 days and also 21 days for zebrafish). <br><br>The Main_data file contains all data used in the publication. The metadata file gives additional information on the columns of "Main_data". Different subset files were done (.txt) to facilitate with making figures. The code used for analyses and making figures is included as an R file.
DOI: 10.15468/dl.w6jpyq
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tantilla deppei (Bocourt, 1883)"
 ]
}

 The dataset includes 16 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032682-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604496_d8
title: Additional file 1: Table S1. of Isolation and characterization of putative functional long terminal repeat retrotransposons in the Pyrus genome

description: Annotation of 440 isolated LTR retrotransposons. (XLSX 88Â kb)
DOI: 10.6084/m9.figshare.c.3604547_d2
title: Additional file 2: Table S2. of Comparative genomic analysis of the compound Brassica napus Rf locus

description: Annotation of B. napus BAC NO202E11. (XLS 20Â kb)
DOI: 10.6084/m9.figshare.c.3604526_d4
title: Additional file 3: Table S2. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

description: Number of SNPs per chromosome present in the 14 selected cultivars referred to Nipponbare genome and percentage of SNP present in each chromosome in each cultivar. The number of non-redundant SNPs in each chromosome is indicated. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3604526_d5
title: Additional file 1: Table S1. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

description: List of cultivars included in the analysis with their country of origin, days to heading and release date (a, before 1900; b, 1900–1965; c, 1966–2000; d, after 2000). Membership (&gt;80 %) to K = 4, K = 5 and K = 6 groups defined by STRUCTURE is also indicated. Accessions displaying approximately 50 % of membership to two subpopulations are also indicated. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3604565_d5
title: Additional file 8: of Exploiting genotyping by sequencing to characterize the genomic structure of the American cranberry through high-density linkage mapping

description: Generated SNPs submitted to the National Center of Biotechnology Information (NCBI) and the NCBI_ss#. (TXT 322 kb)
DOI: 10.6084/m9.figshare.c.3604577_d1
title: Additional file 6: Table S3. of Phosphoproteome dynamics mediate revival of bacterial spores

description: Dynamics of the germinating spore phosphoproteome. Changes in protein phosphorylation level between 0 to 10- and 30-minute time points. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3604577_d2
title: Additional file 4: Table S2. of Phosphoproteome dynamics mediate revival of bacterial spores

description: Phosphorylation sites detected in Ravikumar et al. [30] and current study. Comparison between phosphorylation sites detected during B. subtilis vegetative growth and germination. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3604577_d4
title: Additional file 7: Table S4. of Phosphoproteome dynamics mediate revival of bacterial spores

description: Estimated occupancies of phosphorylation sites detected in this study. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3604577_d5
title: Additional file 2: Table S1. of Phosphoproteome dynamics mediate revival of bacterial spores

description: The germinating spore phosphoproteome. Phospho-sites identified in this study were clustered according to their biological processes, as assigned by the DAVID functional annotation tool. (XLSX 27 kb)