cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26037/yareta:cyekjdvz75cdba4p3ifxjae6zm
title: Effect of Intermediate Airway Management on Ventilation Parameters in Simulated Pediatric Out-of-Hospital Cardiac Arrest: a Multicenter Randomized Crossover Trial

description: Data obtained in the multicenter randomized crossover trial assessing the effect of intermediate airway management on ventilation parameters in simulated pediatric out-of-hospital cardiac arrest
DOI: 10.26037/yareta:dbqi2lzwyffitptvdxvabays54
title: Angiopausin

description: Données pour l'article Angiopausin de Dermatology-2024
DOI: 10.26037/yareta:eljuqzlz6jf7xff4jaclrgjdjy
title: Framorando_Perozzo_Social_Comparison_And_Effort

description: Data and data coding of the experiment reported in:

David Framorando & Delia Perozzo

When Social Comparison Works as Demotivator: Stronger Peers Mitigate Levels of Effort
DOI: 10.26037/yareta:ftzfcqvt5zb77hsk56n24vh4r4
title: The role of the reference point and subjective age in metamemory for prospective memory

description: This is the data collected in Experiment 2 of the study titled "Metamemory for Prospective Memory Performance in Younger and Older Adults: Does the Reference Point Affect our Judgments?"
DOI: 10.26037/yareta:gvks3nbwxve7vjqylbape2ztda
title: LusTra sound and accelerometer data 

description: This dataset contains all the data used for the LusTra project. All the data are separated by waste type first (ALU, PET, Other). Then, another separation by data acquisition type (Accel or sound). There is more sound data than accelerometer data with 1245 sound samples and 693 accelerometer samples.

The waste name in the file name doesn't necessarily represent the type of waste, the access path does.
DOI: 10.26037/yareta:jfmw6oa56zeg3ppsuj37eblfbe
title: Experience of violence and attitudes of staff members in psychiatric setting - focus on insecurity

description: This dataset contains data collected during the study "Experience of violence and attitudes of staff members in psychiatric settings" in 2021 in Geneva. This dataset focuses on the feeling of insecurity. It is being made public to support the resulting publication, "Determinants of the feeling of insecurity in the workplace resulting from patients’ violence among staff members in a psychiatric department: an observational study".

3 formats are available: .csv, .sav and .omw (see jamovi.org)
DOI: 10.26037/yareta:kc446nwxifbvtb5z7l2f6tayga
title: Toxoplasma gondii devoid of an apicoplast

description: Several medically relevant Apicomplexa critically rely on the apicoplast, a remnant plastid organelle derived from secondary endosymbiosis. The apicoplast has lost its photosynthetic function but harbors essential metabolic pathways. Here, we characterize the four output-generating pathways in the Toxoplasma gondii apicoplast as well as an accessory pathway and identify conditions that bypass these. While the organelle was considered indispensable for T. gondii, bypassing all pathways renders the apicoplast obsolete. We demonstrate here that T. gondii devoid of an apicoplast (T. gondii–Apico) can be maintained indefinitely in culture and be exploited to probe the organelle’s functions. Apicoplast loss was achieved through treatment with actinonin which targets the metalloprotease FtsH1 required for apicoplast maintenance and function. Quantitative proteomic analyses of T. gondii–Apico provide unprecedented insights into adaptation mechanisms following loss of the organelle and uncover ~100 putative apicoplast proteins, revealed by their reduced abundance in parasites lacking the organelle. Additionally, T. gondii–Apico display reduced sensitivity to compounds that act on the organelle, facilitating the identification of compounds that target the apicoplast. The continuous culture of T. gondii lacking its plastid organelle opens new avenues to dissect the apicoplast and device new strategies to target the apicomplexans.

This study characterized the metabolism and proteome of T. gondii lacking an apicoplast.

Proteomic data was collected at the Proteomics Facility of the Centre Medical Universitaire of the University of Geneva.

Fatty acids and polar metabolites were analysed by GC-MS in the laboratory of Prof. Dominique Soldati-Favre, experiments conducted by Joachim Kloehn.

Information regarding the samples, harvest, derivatization, analysis can be found in the associated text files.
DOI: 10.26037/yareta:kfyckq465nbp3egok6udpio2xu
title: Private Letter

description: Description of Greek Documentary Papyri: Private Letter

https://grammateus.unige.ch/descriptions/letter_private

https://web.archive.org/web/20240715134541/https://grammateus.unige.ch/descriptions/letter_private

Related archives:
- authority lists https://doi.org/10.26037/yareta:qobfo4lb2vezplc45wvydalevq
- grammateus typology https://doi.org/10.26037/yareta:pwpy6suznrdnjg67znabqr2vl4

Past version:
https://doi.org/10.26037/yareta:ondfbf6y4bcnllsz56on33yyxm
DOI: 10.26037/yareta:mbmiv63dbfcedohocbcdv7edti
title: Personal Choice Shields Against Affective Influences on Effort in a “Do Your Best” Task: Effects on Cardiac Response

description: Data and data coding of the study reported in: 
Johanna R. Falk, David Framorando, Peter M. Gollwitzer, Gabriele Oettingen, & Guido H. E. Gendolla
Personal Choice Shields Against Affective Influences on Effort in a “Do Your Best” Task: Effects on Cardiac Response
DOI: 10.26037/yareta:naduag3ifrc4pitoua6yvcr6ny
title: Stress reports (patient and peer/proxy), application usage, touches buffered and user activity collected with a Smartphone

description: When using this resource, please cite the original publication:

"You are not you when you are tired: The effects of ego depletion on stress levels reporting", Bellanger et al., 2024.
In press.

1. DESCRIPTION:

This dataset is split in two parts:

1. The 'apps' folder, which contains 3 files. One is all the apps used by the 36 participants during the study. The two others correspond to a classification made either by the authors either by ChatGPT to determine if they are hedonic (see section 2.4 of the article above).

2. The 'dyads' folder, with 3 sub-folders of 4 files. The subfolders correspond to the dyads mentioned in the paper. In each sub-folder, there is a file with all the data recorded, and 3 other files with data corresponding to the assigned group (see section 2.2 of the article above). These files contain the date, the start and end timestamps of the period analysed, the season, dayweek, period, number of touches, number of apps used, type of activity, confidence and Y value delta.

The data collection occurred between 26 September 2018 and 26 March 2019.

2. DEMOGRAPHICS:

Demographics are not available.

3. DATA:

Check the "documentation" folder for more information regarding the type of data included and file names.

4. STUDY PROTOCOL:

The study protocol was approved by CUREG.
DOI: 10.26037/yareta:pg2zi3wrzfctjewr27f2ciqtvm
title: Dataset for Polycyclic Pyrazolidines by Tandem Diazomalonate Dipolar Cycloadditions and CpRu-Catalyzed Carbene Additions

description: Thanks to the ability of diazo derivatives to react either as 1,3-dipoles and as carbenes after dinitrogen extrusion, combinations of oxa or aza benzonorbornadienes and diazomalonates afford polycyclic pyrazolidines via a three-step sequence of (i) a highly diastereoselective [3+2]-cycloaddition, (ii) a CpRu-catalyzed carbene addition, and (iii) a second dipolar cycloaddition. Of importance, step (II) represents a unique access to novel bench-stable N,N-cyclic azomethine imines, which behave as effective 1,3-dipoles in combination with electron-poor dipolarophiles. Each step proceeds efficiently and the 3-step process can be performed in one-pot to yield a polycyclic pyrazolidine in excellent overall yield (90%).
DOI: 10.26037/yareta:qxwracwpefe5pb5ll32wvh7ecq
title: Franco_etal_Are brain activity changes underlying the rare word production after learning specific or do they extend to semantically related rare words?

description: Stimuli, code analysis, grand-average per participants in asc and ep format, behavioural data and fitting data for single trials
Processed behavioral data 
Raw EEG data
DOI: 10.26037/yareta:t322v3jssjbqjphybstflqsala
title: High-Throughput Liquid Chromatography- Vacuum Differential Mobility Spectrometry-Mass Spectrometry for the Analysis of Isomeric Drugs of Abuse in Human Urine

description: DV/CV Data, Validation data and representative chromatograms
DOI: 10.26037/yareta:va4q3j4saja4tbr2sikeotmyle
title: LA Survey Participation Rate

description: Complete LA study dataset for comparison of participation rates between participants contacted directly by the research team and those contacted by intermediaries.
DOI: 10.26037/yareta:z5fofbtxxvbm3jur37g47azszq
title: Raw dataset of SLIDE imaging of stem cells in whole blood by SHG emission of Bismuth Ferrite nanoparticles

description: Raw data file in blood SLIDE imaging used for 

Harmonic Imaging of Stem Cells in Whole Blood at GHz Pixel Rate

Sebastian Karpf, Nina Glöckner Burmeister, Laurence Dubreil, Shayantani Ghosh, Reka Hollandi, Julien Pichon, Isabelle Leroux, Alessandra Henkel, Valerie Lutz, Jonas Jurkevičius, Alexandra Latshaw, Vasyl Kilin, Tonio Kutscher, Moritz Wiggert, Oscar Saavedra-Villanueva, Alfred Vogel, Robert A. Huber, Peter Horvath, Karl Rouger, Luigi Bonacina … See fewer authors

First published: 11 June 2024
https://doi.org/10.1002/smll.202401472

See the published articles for details
DOI: 10.15468/dl.xwadve
title: Occurrence Download

description: A dataset containing 1109459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus, Myocastor coypus)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1109459 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004738-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26037/yareta:2f3g2ftssjhczatvxxqmldokqq
title: Robustness of competing climatic states

description: Data produced by MITgcm and TheDiaTo and used in Ragon, C., V. Lembo, V. Lucarini, C. Vérard, J. Kasparian, and M. Brunetti, 2022: Robustness of Competing Climatic States. J. Climate, 35, 2769–2784, https://doi.org/10.1175/JCLI-D-21-0148.1.
DOI: 10.26037/yareta:3hcqxrx5zfgulnwrcibucjgziu
title: LA retrospective data

description: Anonymized data from patients having undergone axillary brachial plexus block between January 2017 and December 2021 at the Geneva University Hospitals (Switzerland). Data was gathered for a retrospective cohort study. The primary outcome was the proportion of patients who received local anesthetics doses higher than the maximum safe dose according to scientifically grounded calculation rules. Secondary outcomes included the proportion of patients who received doses higher than calculated according to actual and ideal body weights, the incidence of symptoms compatible with local anesthetic systemic toxicity , and the incidence of vascular puncture. The influence of patient age and sex, and of operator sex and experience, were also analyzed.
DOI: 10.26037/yareta:bzjkenlj55djbhofodb2on7biu
title: Comparison of tissue tropism and host response to enteric and respiratory enteroviruses

description: Enteroviruses (EVs) are among the most prevalent viruses worldwide. They are characterized by a high genetic and phenotypic diversity, being able to cause a plethora of symptoms. EV-D68, a respiratory EV, and EV-D94, an enteric EV, represent an interesting paradigm of EV tropism heterogeneity. They belong to the same species, but display distinct phenotypic characteristics and in vivo tropism. Here, we used these two viruses as well as relevant 3D respiratory, intestinal and neural tissue culture models, to highlight key distinctive features of enteric and respiratory EVs. We emphasize the critical role of temperature in restricting EV-D68 tissue tropism. Using transcriptomic analysis, we underscore fundamental differences between intestinal and respiratory tissues, both in the steady-state and in response to infection. Intestinal tissues present higher cell proliferation rate and are more immunotolerant than respiratory tissues. Importantly, we highlight the different strategies applied by EV-D94 and EV-D68 towards the host antiviral response of intestinal and respiratory tissues. EV-D68 strongly activates antiviral pathways while EV-D94, on the contrary, barely induces any host defense mechanisms. In summary, our study provides an insightful characterization of the differential pathogenesis of EV-D68 and EV-D94 and the interplay with their main target tissues.
DOI: 10.26037/yareta:e2agcllpqvajxaqgslymh4wojq
title: Full-length and N-terminally truncated interleukin-38 variants are similarly inefficient in antagonizing interleukin-36 and interleukin-1 receptors 

description: Source data linked to the manuscript 'Full-length and N-terminally truncated interleukin-38 variants are similarly inefficient in antagonizing interleukin-36 and interleukin-1 receptors'
DOI: 10.26037/yareta:hhhyrnxd3zbeho74z33s4evra4
title: Structural and solvent modulation of symmetry-breaking charge-transfer pathways in molecular triads

description: Data presented in: 'Excited-State Symmetry Breaking and Localisation in a Non-Centrosymmetric Electron Donor-Acceptor-Donor Molecule', B. Dereka, E. Balanikas, A. Rosspeintner, Z. Li, R. Liska, and E. Vauthey, J. Phys. Chem. Lett. (2024) 15, 17362-17371, http://dx.doi.org/10.1039/D4SC05419A
DOI: 10.26037/yareta:i3uvsn4ew5be3i42tpuw65lk3m
title: Altered cell function and increased replication of rhinoviruses and EV-D68 in airway epithelia of asthma patients

description: Introduction: Rhinovirus (RV) infections constitute one of the main triggers of asthma exacerbations and an important burden in pediatric yard. However, the mechanisms underlying this association remain poorly understood.

Methods: In the present study, we compared infections of in vitro reconstituted airway epithelia originating from asthmatic versus healthy donors with representative strains of RV-A major group and minor groups, RV-C, RV-B, and the respiratory enterovirus EV-D68.

Results: We found that viral replication was higher in tissues derived from asthmatic donors for all tested viruses. Viral receptor expression was comparable in non-infected tissues from both groups. After infection, ICAM1 and LDLR were upregulated, while CDHR3 was downregulated. Overall, these variations were related to viral replication levels. The presence of the CDHR3 asthma susceptibility allele (rs6967330) was not associated with increased RV-C replication. Regarding the tissue response, a significantly higher interferon (IFN) induction was demonstrated in infected tissues derived from asthmatic donors, which excludes a defect in IFN-response. Unbiased transcriptomic comparison of asthmatic versus control tissues revealed significant modifications, such as alterations of cilia structure and motility, in both infected and non-infected tissues. These observations were supported by a reduced mucociliary clearance and increased mucus secretion in non-infected tissues from asthmatic donors.

Discussion: Altogether, we demonstrated an increased permissiveness and susceptibility to RV and respiratory EV infections in HAE derived from asthmatic patients, which was associated with a global alteration in epithelial cell functions. These results unveil the mechanisms underlying the pathogenesis of asthma exacerbation and suggest interesting therapeutic targets.
DOI: 10.26037/yareta:il2eiidzy5ezvgethv2r3cetde
title: Variant enterovirus A71 found in immune- suppressed patient binds to heparan sulfate and exhibits neurotropism in B-cell-depleted mice

description:  Enterovirus A71 (EV-A71) causes hand, foot, and mouth disease outbreaks with neurological complications and deaths. We previously isolated an EV-A71 variant in the stool, cerebrospinal ﬂuid, and blood of an immunocompromised patient who had a leucine-to-arginine substitution on the VP1 capsid protein, resulting in increased heparin sulfate binding. We show here that this mutation increases the virus’s pathogenicity in orally infected mice with depleted B cells, which mimics the patient’s immune status, and increases susceptibility to neutralizing antibodies. However, a double mutant with even greater heparin sulfate afﬁnity is not pathogenic, suggesting that increased heparin sulfate afﬁnity may trap virions in peripheral tissues and reduce neurovirulence. This research sheds light on the increased pathogenicity of variant with heparin sulfate (HS)-binding ability in individuals with decreased B cell immunity.
DOI: 10.26037/yareta:jdiwthedc5hmjfjcoatdqr3mh4
title: Interferon-Dependent and Respiratory Virus-Specific Interference in Dual Infections of Airway Epithelia

description: Raw data used to create each figure of the manuscript
DOI: 10.26037/yareta:mkqbovnp5bb3poekqdtrbjr6xy
title: Binning method for artifact-free time-tag based correlation function calculations

description: Data presented in the publication "Binning method for artifact-free time-tag based correlation function calculations* (DOI:10.1364/OL.532069)
DOI: 10.26037/yareta:o7zo64imqvaofd5qf5kdpheuui
title: Entre terres et mers - Postdoc Marc Duret

description: Données relatives au postdoctorat de Marc Duret
DOI: 10.26037/yareta:onmqhnenhrhj7pouwnd7wsyb74
title: Librarians’ quest to exhaustivity and openness: tracking institutional publications and observing evolving trends in data sharing

description: Data used for the research presented in Riga at the EAHIL Conference.

Source data include: 
PubMed data: Courtesy of the U.S. National Library of Medicine 
OpenALEX data: licensed as CC0 by OurResearch
PLOS Open Science Indicators Data set licensed under CC BY 4.0 by PLOS. https://doi.org/10.6084/m9.figshare.21687686.v6
DOI: 10.26037/yareta:s346elzwmzfszk2gmtiecm6che
title: In agro crotoniensi - Thèse de doctorat - Marc Duret

description: Données relatives à la thèse de doctorat de Marc Duret
DOI: 10.26037/yareta:u3budyxmyfgwjixnh2zc2sccuq
title: Data for Librarians’ quest to exhaustivity and openness: tracking institutional publications and observing evolving trends in data sharing

description: This archive contains the jupyter Notebook as well as the original files (sources and results) for the "Librarians’ quest to exhaustivity and openness: tracking institutional publications and observing evolving trends in data sharing" project which was presented at the EAHIL 2024 Conference in Riga (Latvia) in June 2024.

The aim of the project was 2-fold:

1. Observe data sharing trends in publications by authors affiliated with our institution: are they sharing data more than in the past? are they sharing in supplementary files or in research data repositories? which data repositories? Are those trends comparable with data from other institutions or publishers? is 2.  Identify publications that are missing in our repository, and seek common patterns amongst them: is there any reason or logical explanation for their absence? Are they not deposited in the repository because they cannot be made Open Access? Or on the opposite, because, being OA, authors do not feel the need to deposit them?

Data sources included Archive ouverte UNIGE, PubMed's UNIGE publications, OpenAlex's UNIGE Publications, and the PLOS Open Science indicator dataset (https://doi.org/10.6084/m9.figshare.21687686.v4)

Licences:
Code is licensed under MIT Licence, 
Figures and results are licensed under CC BY 4.0
Raw data licences are as follow:
• PubMed data: Courtesy of the U.S. National Library of Medicine
• OpenALEX data: licensed as CC0 by OurResearch
• PLOS Open Science Indicators Data set licensed under CC BY 4.0 by PLOS
• Archive ouverte UNIGE metadata: CC0

Main result files include:
- a list of institutional publications in the institution repository (IR) [aou_all.tsv]
- details about their linked/associated shared data [aou_856.tsv]
- a list of institutional publications according to PubMed as well as the indication of whether the publication is or not in the IR [pubmed_aou.tsv]
- a file with combined data from PubMed, the IR and OpenAlex for UNIGE Biomedical publications published between 2017 and 2022.[aou_pubmed_openalex.tsv]
DOI: 10.26037/yareta:uluquhaq7zf4tb2lxbxbkvvzse
title: NK and T cell repertoire is established early after allogeneic HSCT and is imprinted by CMV reactivation 

description: This public dataset contains the TCR CDR3 beta immunosequencing data of a cohort of 54 recipients at 3, 6, 9, and 12 months after allogeneic hematopoietic stem cell transplantation and their respective donors just prior to the transplantation.
DOI: 10.26037/yareta:uv4b7eisfbegdkatooj57xkjfu
title: Prova_obsolete_archive

description: [obsolete_do_not_use]
DOI: 10.26037/yareta:v4uzhs5xhbcavlt4dsnihxvopa
title:  Is the articulatory trajectory of changing syllables important for achieving higher syllable rates compared to repeated syllables?

description: Syllable rate data for alternating and sequential motion rate tasks.
DOI: 10.26037/yareta:v7o4loyunzgcfacnxhexxadpmm
title: K.9128+

description: K.9128 + K.9203 + K.9428 + K.13300
Photographs by the Shumma alu team (FNS projects nos. 175970 and 205122)
DOI: 10.26037/yareta:vzkfwgcqkfdanpv47mopub3nte
title: Excitation-Wavelength Dependent Photophysics of a Torsionally Disordered Push-Pull Dye

description: Data presented in: 'Excitation-Wavelength Dependent Photophysics of a Torsionally Disordered Push-Pull Dye', I. Fureraj, J. Wega, E. Balanikas, K. K. P. Pamungkas, N. Sakai, S. Matile and E. Vauthey, J. Phys. Chem. Lett. (2024), 15, 7857-7862
https://doi.org/10.1021/acs.jpclett.4c01840
DOI: 10.26037/yareta:xe4xwdhnr5gyrlakhmvjc2et6y
title: ATM1, an essential conserved transporter in Apicomplexa, bridges mitochondrial and cytosolic [Fe-S] biogenesis - Addition

description: This dataset is an addition to another deposition: https://doi.org/10.26037/yareta:imf7o2y5kvghzefwecqsemjh3y

It includes proteomics data of cells overexpressing a second copy of TgATM1 in the UPRT locus in addition to TgATM1 in the endogenous locus. This data complements that of cells depleted in TgATM1 - see above URL. All information is provided in the included file and the associated publication.


The Apicomplexa phylum encompasses numerous obligate intracellular parasites with severe implications for human health, including Plasmodium, Cryptosporidium, and Toxoplasma gondii. The iron-sulfur cluster [Fe-S] biogenesis, ISC pathway, localized within the mitochondrion or mitosome of these parasites, is vital for parasite survival and development. Previous work on T. gondii provided insights into the mechanisms of [Fe-S] biogenesis within this phylum, although the transporter linking mitochondria-generated [Fe-S] with cytosolic [Fe-S] assembly (CIA) pathway remained elusive. This critical step is catalysed by a well-conserved ABC transporter in numerous species, termed ATM1 in yeast, ATM3 in plants and ABCB7 in mammals. Here we uncover PfATM1 and TgATM1 and demonstrate its role in transporting [Fe-S] across apicomplexan parasite mitochondrial membranes. While downregulation of TgATM1 does not specifically affect mitochondrial metabolism, it impacts on [Fe-S] protein levels, indicating its role in cellular homeostasis. Depletion of TgATM1 can be complemented through expression of the well-characterized yeast homologue, ScATM1, further validating the function of the apicomplexan transporter. PfATM1's biochemical characterization shows interactions with mitochondrial ISC proteins and the cytosolic CIA protein PfNBP35, confirming it as a functional ABC transporter, modulated by oxidized glutathione (GSSG) and [4Fe-4S].
DOI: 10.26037/yareta:45juphkknbcd7j4kxomhbk3m4m
title: Local antigen encounter promotes generation of tissue-resident memory T cells in the large intestine

description: Tabula data supporting findings reported in the study titled: "Local antigen encounter promotes generation of tissue-resident memory T cells in the large intestine".