cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10579185
title: MSI(Mass spectrum imaging) dataset for MS-DIAL5 tutorial

description: This dataset is used for the tutorial of msi data analysis in MS-DIAL5. It contains:



zip file of ".d files" used for mass spectrometry imaging data analysis


 

This dataset has been selected from the Dataset 2 of 

DROP Met:  DM0048. ACSL6 facilitates the local distribution of di-DHA- and ULC-PUFA-containing phospholipids in the retina to support normal visual function in mice

The dataset is associated with the following paper.





Kuroha, S. et al. Long chain acyl‐CoA synthetase 6 facilitates the local distribution of di‐docosahexaenoic acid‐ and ultra‐long‐chain‐PUFA‐containing phospholipids in the retina to support normal visual function in mice. The FASEB Journal 37, e23151 (2023).
DOI: 10.6084/m9.figshare.24500983
title: Raw data: Anatomy of the antenna and sex patch in both sexes of three Danaus species

description: The anatomical characteristics of the antennae and scent patches of <i>Danaus chrysippus</i>, <i>Danaus genutia,</i> and <i>Danaus plexippus</i>, including the length of the whole antenna, the scape, pedicel, flagellum, and flagellomere, the area and the width of the apical club, the amount and size of the sensilla, the area of the scent patch and its androconial scale, and the parameters that affect the emissivity of the androconial scales.
DOI: 10.6084/m9.figshare.24500983.v1
title: 原始数据：三个Danaus物种的触角和性斑块的解剖结构

description: Danaus chrysippus、Danaus genutia 和 Danaus plexippus 触角和气味斑块的解剖学特征，包括整个触角的长度、景观、蒂、鞭毛和鞭毛、顶端棒的面积和宽度、感器的数量和大小、气味斑块的面积及其雄性鳞片， 以及影响雄激素量表发射率的参数
DOI: 10.5281/zenodo.10622603
title: Epitaxial Indium on PbTe Nanowires for Quantum Devices

description: This repository contains the raw data and processing codes within the paper " Epitaxial Indium on PbTe Nanowires for Quantum Devices"
DOI: 10.5281/zenodo.10360718
title: Optimizing representations for integrative structural modeling using Bayesian model selection

description: Integrative structural modeling combines data from experiments, physical principles, statistics of previous structures, and prior models to obtain structures of macromolecular assemblies that are challenging to characterize experimentally. The choice of model representation is a key decision in integrative modeling, as it dictates the accuracy of scoring, efficiency of sampling, and resolution of analysis.  But currently, the choice is usually made ad hoc, manually. Here, we have deposited NestOR (Nested Sampling for Optimizing Representation), a fully automated, statistically rigorous method based on Bayesian model selection to identify the optimal coarse-grained representation for a given integrative modeling setup. We have also deposited a benchmark of four macromolecular assemblies which was used to assess the performance of NestOR.
DOI: 10.5281/zenodo.10360719
title: Optimizing representations for integrative structural modeling using Bayesian model selection

description: Integrative structural modeling combines data from experiments, physical principles, statistics of previous structures, and prior models to obtain structures of macromolecular assemblies that are challenging to characterize experimentally. The choice of model representation is a key decision in integrative modeling, as it dictates the accuracy of scoring, efficiency of sampling, and resolution of analysis.  But currently, the choice is usually made ad hoc, manually. Here, we have deposited NestOR (Nested Sampling for Optimizing Representation), a fully automated, statistically rigorous method based on Bayesian model selection to identify the optimal coarse-grained representation for a given integrative modeling setup. We have also deposited a benchmark of four macromolecular assemblies which was used to assess the performance of NestOR.
DOI: 10.5281/zenodo.10622631
title: Optimizing representations for integrative structural modeling using Bayesian model selection

description: Integrative structural modeling combines data from experiments, physical principles, statistics of previous structures, and prior models to obtain structures of macromolecular assemblies that are challenging to characterize experimentally. The choice of model representation is a key decision in integrative modeling, as it dictates the accuracy of scoring, efficiency of sampling, and resolution of analysis.  But currently, the choice is usually made ad hoc, manually. Here, we have deposited NestOR (Nested Sampling for Optimizing Representation), a fully automated, statistically rigorous method based on Bayesian model selection to identify the optimal coarse-grained representation for a given integrative modeling setup. We have also deposited a benchmark of four macromolecular assemblies which was used to assess the performance of NestOR.
DOI: 10.34740/kaggle/dsv/7567503
title: Layline Shareholder activism dataset
DOI: 10.5281/zenodo.7787625
title: Air-Sea fluxes of CO2 in the Indian Ocean between 1985 and 2018: A synthesis based on Observation-based surface CO2, hindcast and atmospheric inversion models.

description: This data set contains 14 hindcast models (CCSM-WHOI.nc, CESC_ETHZ.nc, CNRM-ESM2-1.nc, EC_Earth3.nc, FESOM_REcoM_LR.nc, MOM6_Princeton.nc, MPIOM_HAMOCC.nc; MRI-ESM2-1.nc, NorESM-OC1.2.nc, ORCA1-LIM3-PISCES.nc, ORCA025-EOMAR.nc, Plankotom12, INCOIS-BIO-ROMS.nc, ROMS-NYUAD.nc), nine empirical models (CMEMS-LSCE-FFNN.nc, CSIRML6.nc, Jena-MLS.nc, JMAMLR.nc, Spco2_LDEO_HPD.nc, SOMFNN.nc, NIES-MLR3.nc, UOEX-WAT20.nc, OceanSODAETHZ.nc) and CO2 flux climatology data (CO2_Climatology.nc). This data set also has two atmospheric inversion models output and those are - MACTM (MACTM.nc) and CAMSv20r1 (CMSv20r1.zip format and inside the zip folder files are .nc format).
DOI: 10.5281/zenodo.7787626
title: Air-Sea fluxes of CO2 in the Indian Ocean between 1985 and 2018: A synthesis based on Observation-based surface CO2, hindcast and atmospheric inversion models.

description: This data set contains 14 hindcast models (CCSM-WHOI.nc, CESC_ETHZ.nc, CNRM-ESM2-1.nc, EC_Earth3.nc, FESOM_REcoM_LR.nc, MOM6_Princeton.nc, MPIOM_HAMOCC.nc; MRI-ESM2-1.nc, NorESM-OC1.2.nc, ORCA1-LIM3-PISCES.nc, ORCA025-EOMAR.nc, Plankotom12, INCOIS-BIO-ROMS.nc, ROMS-NYUAD.nc), nine empirical models (CMEMS-LSCE-FFNN.nc, CSIRML6.nc, Jena-MLS.nc, JMAMLR.nc, Spco2_LDEO_HPD.nc, SOMFNN.nc, NIES-MLR3.nc, UOEX-WAT20.nc, OceanSODAETHZ.nc) and CO2 flux climatology data (CO2_Climatology.nc). This data set also has two atmospheric inversion models output and those are - MACTM (MACTM.nc) and CAMSv20r1 (CMSv20r1.zip format and inside the zip folder files are .nc format).
DOI: 10.34740/kaggle/dsv/7567716
title: 📒 Meta Kaggle ported to MS SQL SERVER 2022 DB
DOI: 10.6084/m9.figshare.25150527
title: Additional file 1 of A real-world cohort study of first-line afatinib in patients with EGFR-mutant advanced non-small cell lung cancer in Vietnam

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.25150527.v1
title: Additional file 1 of A real-world cohort study of first-line afatinib in patients with EGFR-mutant advanced non-small cell lung cancer in Vietnam

description: Supplementary Material 1
DOI: 10.25919/g8vb-me92
title: Parkes pulsar observations with undefined project IDs for 2023OCTS_08

description: Parkes pulsar observations with undefined project IDs for 2023OCTS. This collection contains observations from project IDs PX092, PX096, PX103, PX118, PX120 and PX121.
DOI: 10.5281/zenodo.10128068
title: 16S rRNA gene and ITS2 region amplicon sequencing of GBP5 KO mice and WT littermates

description: 16S rRNA gene (v4) and ITS2 region amplicon sequencing of fecal microbiota of GBP5 KO mice and their littermate WT mice.
DOI: 10.5281/zenodo.10128069
title: 16S rRNA gene and ITS2 region amplicon sequencing of GBP5 KO mice and WT littermates

description: 16S rRNA gene (v4) and ITS2 region amplicon sequencing of fecal microbiota of GBP5 KO mice and their littermate WT mice.
DOI: 10.25912/rdf_1707197851357
title: Datasets for calculating the contributions of marine reserves to fisheries on the Great Barrier Reef
DOI: 10.5281/zenodo.10622772
title: Salmon outputs for RNAseq profiling of colonic mucosal response to FMT

description: Salmon outputs for RNAseq profiling of colonic mucosal response to FMT
DOI: 10.5281/zenodo.10622773
title: Salmon outputs for RNAseq profiling of colonic mucosal response to FMT

description: Salmon outputs for RNAseq profiling of colonic mucosal response to FMT
DOI: 10.20372/aau_rdm/zs7mdh
title: Food Security Studies, Livelihood Diversification and Resilience Studies

description: It is original data collected for carrying out academic research as part of PhD degree studies in the Center of Food Security and Development Studies, College of Development Studies, Addis Ababa University. The data concerns food security studies, livelihood Diversification and resilience studies.
DOI: 10.6084/m9.figshare.7878461
title: Proteomics and phosphoproteomics study of LCMT1 overexpression and oxidative stress: overexpression of LCMT1 arrests H<sub>2</sub>O<sub>2</sub>-induced lose of cells viability

description: <b>Objectives:</b> Protein phosphatase 2A (PP2A), a major serine/threonine phosphatase, is also known to be a target of ROS. The methylation of PP2A can be catalyzed by leucine carboxyl methyltransferase-1 (LCMT1), which regulates PP2A activity and substrate specificity. <b>Methods:</b> In the previous study, we have showed that LCMT1-dependent PP2Ac methylation arrests H<sub>2</sub>O<sub>2</sub>-induced cell oxidative stress damage. To explore the possible protective mechanism, we performed iTRAQ-based comparative quantitative proteomics and phosphoproteomics studies of H<sub>2</sub>O<sub>2</sub>-treated vector control and LCMT1-overexpressing cells. <b>Results:</b> A total of 4480 non-redundant proteins and 3801 unique phosphopeptides were identified by this means. By comparing the H<sub>2</sub>O<sub>2</sub>-regulated proteins in LCMT1-overexpressing and vector control cells, we found that these differences were mainly related to protein phosphorylation, gene expression, protein maturation, the cytoskeleton and cell division. Further investigation of LCMT1 overexpression-specific regulated proteins under H<sub>2</sub>O<sub>2</sub> treatment supported the idea that LCMT1 overexpression induced ageneral dephosphorylation of proteins and indicated increased expression of non-erythrocytic hemoglobin, inactivation of MAPK3 and regulation of proteins related to Rho signal transduction, which were known to be linked to the regulation of the cytoskeleton. <b>Discussion:</b> These data provide proteomics and phosphoproteomics insights into the association of LCMT1-dependent PP2Ac methylation and oxidative stress and indirectly indicate that the methylation of PP2A plays an important role against oxidative stress.
DOI: 10.6084/m9.figshare.7878461.v1
title: Proteomics and phosphoproteomics study of LCMT1 overexpression and oxidative stress: overexpression of LCMT1 arrests H<sub>2</sub>O<sub>2</sub>-induced lose of cells viability

description: <b>Objectives:</b> Protein phosphatase 2A (PP2A), a major serine/threonine phosphatase, is also known to be a target of ROS. The methylation of PP2A can be catalyzed by leucine carboxyl methyltransferase-1 (LCMT1), which regulates PP2A activity and substrate specificity. <b>Methods:</b> In the previous study, we have showed that LCMT1-dependent PP2Ac methylation arrests H<sub>2</sub>O<sub>2</sub>-induced cell oxidative stress damage. To explore the possible protective mechanism, we performed iTRAQ-based comparative quantitative proteomics and phosphoproteomics studies of H<sub>2</sub>O<sub>2</sub>-treated vector control and LCMT1-overexpressing cells. <b>Results:</b> A total of 4480 non-redundant proteins and 3801 unique phosphopeptides were identified by this means. By comparing the H<sub>2</sub>O<sub>2</sub>-regulated proteins in LCMT1-overexpressing and vector control cells, we found that these differences were mainly related to protein phosphorylation, gene expression, protein maturation, the cytoskeleton and cell division. Further investigation of LCMT1 overexpression-specific regulated proteins under H<sub>2</sub>O<sub>2</sub> treatment supported the idea that LCMT1 overexpression induced ageneral dephosphorylation of proteins and indicated increased expression of non-erythrocytic hemoglobin, inactivation of MAPK3 and regulation of proteins related to Rho signal transduction, which were known to be linked to the regulation of the cytoskeleton. <b>Discussion:</b> These data provide proteomics and phosphoproteomics insights into the association of LCMT1-dependent PP2Ac methylation and oxidative stress and indirectly indicate that the methylation of PP2A plays an important role against oxidative stress.
DOI: 10.6084/m9.figshare.23606998
title: Additional file 2 of Growth hormone reduces aneuploidy and improves oocytes quality by JAK2-MAPK3/1 pathway in aged mice

description: Additional file 2: Table S2. The total proteins detected by proteomics analysis.
DOI: 10.6084/m9.figshare.23606998.v1
title: Additional file 2 of Growth hormone reduces aneuploidy and improves oocytes quality by JAK2-MAPK3/1 pathway in aged mice

description: Additional file 2: Table S2. The total proteins detected by proteomics analysis.
DOI: 10.6084/m9.figshare.23607001
title: Additional file 3 of Growth hormone reduces aneuploidy and improves oocytes quality by JAK2-MAPK3/1 pathway in aged mice

description: Additional file 3: Table S3. The DE proteins detected by proteomics analysis.
DOI: 10.6084/m9.figshare.23607001.v1
title: Additional file 3 of Growth hormone reduces aneuploidy and improves oocytes quality by JAK2-MAPK3/1 pathway in aged mice

description: Additional file 3: Table S3. The DE proteins detected by proteomics analysis.
DOI: 10.6084/m9.figshare.9975761
title: MOESM1 of Identification of a novel splicing mutation in the SLC25A13 gene from a patient with NICCD: a case report

description: Additional file 1: Table S1. Details of Amplicon sequencing panel for 60 cholestatic jaundice related genes.
DOI: 10.6084/m9.figshare.9975761.v1
title: MOESM1 of Identification of a novel splicing mutation in the SLC25A13 gene from a patient with NICCD: a case report

description: Additional file 1: Table S1. Details of Amplicon sequencing panel for 60 cholestatic jaundice related genes.
DOI: 10.6084/m9.figshare.24655869
title: Additional file 1 of Comprehensive identification and functional characterization of GhpPLA gene family in reproductive organ development

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.22615594
title: Additional file 18 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

description: Additional file 18: Supplementary Table 9. Biocontrol and plant growth-promoting properties of selected Pantoea and Xanthomonas.
DOI: 10.6084/m9.figshare.24655869.v1
title: Additional file 1 of Comprehensive identification and functional characterization of GhpPLA gene family in reproductive organ development

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.22615594.v1
title: Additional file 18 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

description: Additional file 18: Supplementary Table 9. Biocontrol and plant growth-promoting properties of selected Pantoea and Xanthomonas.
DOI: 10.6084/m9.figshare.7878782
title: Additional file 2: of Genome-wide analysis of three histone marks and gene expression in Paulownia fortunei with phytoplasma infection

description: Table S3. Differentially marked histone methylation and acetylation regions between P. fortunei and P. fortunei with phytoplasma infection (XLSX 1028 kb)
DOI: 10.6084/m9.figshare.7878782.v1
title: Additional file 2: of Genome-wide analysis of three histone marks and gene expression in Paulownia fortunei with phytoplasma infection

description: Table S3. Differentially marked histone methylation and acetylation regions between P. fortunei and P. fortunei with phytoplasma infection (XLSX 1028 kb)
DOI: 10.6084/m9.figshare.21510282.v1
title: Additional file 5 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 5. Table S5: CNX family members cis-acting elements and their locations.
DOI: 10.6084/m9.figshare.7878815
title: Additional file 6: of Genome-wide analysis of three histone marks and gene expression in Paulownia fortunei with phytoplasma infection

description: Table S4. List of genes involved in plant-pathogen interaction from ChIP-Seq analysis (XLSX 24 kb)
DOI: 10.6084/m9.figshare.21510279
title: Additional file 4 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 4. Table S4: ID and protein sequences of 60 CNXs family members in cotton.
DOI: 10.6084/m9.figshare.21510279.v1
title: Additional file 4 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 4. Table S4: ID and protein sequences of 60 CNXs family members in cotton.
DOI: 10.6084/m9.figshare.21510282
title: Additional file 5 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 5. Table S5: CNX family members cis-acting elements and their locations.
DOI: 10.6084/m9.figshare.7878815.v1
title: Additional file 6: of Genome-wide analysis of three histone marks and gene expression in Paulownia fortunei with phytoplasma infection

description: Table S4. List of genes involved in plant-pathogen interaction from ChIP-Seq analysis (XLSX 24 kb)
DOI: 10.6084/m9.figshare.21510285
title: Additional file 6 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 6. Table S6: Relative expression levels of CNX family genes after four different abiotic stress treatments.
DOI: 10.6084/m9.figshare.21510285.v1
title: Additional file 6 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 6. Table S6: Relative expression levels of CNX family genes after four different abiotic stress treatments.
DOI: 10.6084/m9.figshare.21510288
title: Additional file 7 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 7. Table S7: Relative expression levels of CNX family members in upland cotton tissues.
DOI: 10.6084/m9.figshare.21510288.v1
title: Additional file 7 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 7. Table S7: Relative expression levels of CNX family members in upland cotton tissues.
DOI: 10.6084/m9.figshare.21510270
title: Additional file 1 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 1. Table S1: CNX family genes corresponding to four Gossypium species genes renamed.
DOI: 10.6084/m9.figshare.21510291
title: Additional file 8 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 8. Table S8: Relative expression levels of 8 selected genes under four abiotic stresses.
DOI: 10.6084/m9.figshare.7878818
title: Additional file 7: of Genome-wide analysis of three histone marks and gene expression in Paulownia fortunei with phytoplasma infection

description: Table S5. List of genes involved in plant hormone signal transduction from ChIP-Seq analysis (XLSX 28 kb)
DOI: 10.6084/m9.figshare.21510270.v1
title: Additional file 1 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 1. Table S1: CNX family genes corresponding to four Gossypium species genes renamed.
DOI: 10.6084/m9.figshare.21510291.v1
title: Additional file 8 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 8. Table S8: Relative expression levels of 8 selected genes under four abiotic stresses.
DOI: 10.6084/m9.figshare.21510294
title: Additional file 9 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 9. Table S9: Relative expression levels of 8 selected genes under four different time treatments of 12% PEG6000.
DOI: 10.6084/m9.figshare.7878818.v1
title: Additional file 7: of Genome-wide analysis of three histone marks and gene expression in Paulownia fortunei with phytoplasma infection

description: Table S5. List of genes involved in plant hormone signal transduction from ChIP-Seq analysis (XLSX 28 kb)
DOI: 10.6084/m9.figshare.21510273
title: Additional file 2 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 2. Table S2: Analysis of the physical properties of CNX genes in G. hirsutum.
DOI: 10.6084/m9.figshare.21510294.v1
title: Additional file 9 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 9. Table S9: Relative expression levels of 8 selected genes under four different time treatments of 12% PEG6000.
DOI: 10.6084/m9.figshare.21510273.v1
title: Additional file 2 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

description: Additional file 2. Table S2: Analysis of the physical properties of CNX genes in G. hirsutum.
DOI: 10.6084/m9.figshare.19945173.v1
title: DEVELOPMENT AND VALIDATION OF ANALYTICAL METHOD FOR PALM OIL DETERMINATION IN MICROCAPSULES PRODUCED BY COMPLEX COACERVATION

description: The microencapsulation of palm oil may be a mechanism for protecting and promoting the controlled release of its bioactive compounds. To optimize the microencapsulation process, it is necessary to accurately quantify the palm oil present both external and internal to the microcapsules. In this study, we developed and validated a spectrophotometric method to determine the microencapsulation efficiency of palm oil by complex coacervation. We used gelatin and gum arabic (1:1) as wall material in a 5% concentration (w/v) and palm oil in the same concentration. The coacervates were obtained at pH 4.0 ± 0.01, decanted for 24 h, frozen (−40 ºC), and lyophilized for 72 h. Morphological analyzes were then performed. We standardized the extraction of the external palm oil through five successive washes with an organic solvent. We then explored the best method for rupturing the microcapsules. After successive extractions with hexane, we determined the amount of palm oil contained in the microcapsules using a spectrophotometer. The proposed method was shown to be of low cost, fast, and easy to implement. In addition, in the validation step, we confirmed the method to be safe and reliable, as it proved to be specific, accurate, precise, and robust.