cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16413857
title: Atomic Layer Deposition and Etching Process Schemas Extracted with Schema-Miner

description: This data repository contains the extracted JSON schemas for Atomic Layer Deposition (ALD) and Atomic Layer Etching (ALE) processes, extracted using the Schema-Miner tool. The schemas are categorized under two distinct use cases: experimental and simulation, to reflect the differing perspectives in ALD/E process modeling.

Each schema captures essential process properties, along with their respective constraints, data types, and other structural details necessary for standardized representation and interoperability. The schema extraction was conducted from a curated set of scientific publications related to ALD/E, leveraging large language models (LLMs) in combination with domain-expert insights to ensure both accuracy and relevance.

The complete methodology is described in our paper “LLMs4SchemaDiscovery: A Human-in-the-Loop Workflow for Scientific Schema Mining with Large Language Models,” presented at ESWC Conference 2025. Read the paper here.

The Schema-Miner tool is publicly available on GitHub: Access the repository.

The extracted schemas have also been uploaded as templates to the Open Research Knowledge Graph (ORKG), and can be accessed via the following links:

Atomic Layer Deposition: 



Experimental Schema: https://orkg.org/templates/R796110

Simulation Schema: https://orkg.org/templates/R1364068


Atomic Layer Etching



Experimental Schema: https://orkg.org/templates/R1379555

Simulation Schema: https://orkg.org/templates/R1431983
DOI: 10.15468/dl.ke7nqr
title: Occurrence Download

description: A dataset containing 2654 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tagetes minuta",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2654 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040313-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6qp8v
title: Occurrence Download

description: A dataset containing 368 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mareca falcata",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 368 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040314-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ny7q8
title: Occurrence Download

description: A dataset containing 22764607 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Chinese Taipei"
 ]
}

 The dataset includes 22764607 records from 1506 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040205-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.932680
title: Greyscale density, sediment core 4523-A

description: This file includes new data on the greyscale density (8-bit) from the core 4523-A, western part of the Bohemian Cretaceous Basin. The interval covers the uppermost Cenomanian through Middle Turonian. The data were extracted from high-resolution (~10 pixels/mm) photographs using the image-processing software ImageJ (National Institutes of Health, Bethesda, MD).
description: High-resolution (~10 pixels/mm) photographs taken under uniform light conditions; the greyscale log was extracted using the image-processing software ImageJ (National Institutes of Health, Bethesda, MD).
DOI: 10.1594/pangaea.933674
title: Multi-proxy analysis of sediment cores from Lake Ginjal (Azores archipelago, Portugal)

description: The Azores archipelago is a group of nine oceanic volcanic islands located in the mid-North Atlantic, roughly 1500 km from Europe and 1900 km from America. In 2018, a sediment core was recovered from Lake Ginjal on Terceira island. A 3.5 m long sediment core was taken using a Russian chamber corer, 0.5 m long, with 5 cm diameter. Lake Ginjal occupies the bottom of a small crater at 390 m above sea level located in the plains of Achada, the oldest volcanic crater of Terceira island. Its maximum length and width are 120 m and 70 m, respectively, and its maximum water depth is 1 m. The core was dated using ¹⁴C and produced a multi-proxy dataset of geochemical and biological analyses that we used to uncover paleoenvironmental changes on Lake Azul in the last 550 years.
DOI: 10.1594/pangaea.932682
title: Si/Al ratios in the bulk sediment, sediment core Bch-1

description: This file includes new data on the ratio of silica vs. aluminium (Si/Al) in the bulk rock from the core Bch-1, western part of the Bohemian Cretaceous Basin. The interval covers the Lower Turonian through lower Middle Turonian.
description: XRF spectrometer NITON XL3t GOLDD+; measurements in the Test All Geo mode were taken for 113 seconds per sample, directly on the flat-cut surface of the split core.
DOI: 10.15468/dl.77nzyb
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Licuala grandiflora Ridl."
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009042-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bw5tfa
title: Occurrence Download

description: A dataset containing 980364 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus robur L."
 ]
}

 The dataset includes 980364 records from 1204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073654-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgao5m
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003060-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.i9werl
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026790-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mw9zt
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kinosternon alamosae Berry & Legler, 1980"
 ]
}

 The dataset includes 108 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086346-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbk2c5
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mackaya macrocarpa (Wall. ex Nees) Das"
 ]
}

 The dataset includes 34 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080873-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d6yq6c
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002784-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tuiz71
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026916-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9pemf
title: Occurrence Download

description: A dataset containing 132576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myrica gale L.",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 132576 records from 547 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009043-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwcdce
title: Occurrence Download

description: A dataset containing 29361372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Callitriche terrestris, Callitriche truncata, Callitriche truncata occidentalis, Callitriche umbonata, Callonetta leucophrys, Camallanus cotti, Cambarellus shufeldtii, Cambarincola gracilis, Cambarincola mesochoreus, Cambarincola okadai, Cambarincola pamelae, Cambarus longirostris, Cambarus robustus, Campostoma anomalum, Campostoma oligolepis, Campostoma pauciradii, Camptocladius stercorarius, Canaceoides angulatus, Capartogramma crucicula, Caquetaia kraussii, Caracara plancus, Carasobarbus apoensis, Carasobarbus canis, Carassius auratus, Carassius auratus auratus, Carassius auratus x Cyprinus carpio, Carassius carassius, Carassius cuvieri, Carassius gibelio, Carassius gibelio, Carassius langsdorfii, Cardinalis cardinalis, Cardiophilus marisnigrae, Carettochelys insculpta, Carex acutiformis, Carex alba, Carex albula, Carex annectens, Carex appressa, Carex aquatilis, Carex arenaria, Carex argyi, Carex arkansana, Carex athrostachya, Carex austrina, Carex bebbii, Carex bichenoviana, Carex binervis, Carex blanda, Carex bohemica)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen)"
 ]
 }
 },
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 29361372 records from 2125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012895-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q9f98w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus radiata D.Don",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200187-220831081235567/datasets/export for details.
DOI: 10.15468/dl.88dd4u
title: Occurrence Download

description: A dataset containing 398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nacerdes Dejean, 1834",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 398 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189478-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xm8jmt
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Puma concolor concolor"
 ]
}

 The dataset includes 50 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200172-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhp53p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus contorta Douglas ex Loudon",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200174-220831081235567/datasets/export for details.
DOI: 10.15468/dl.zbvfsq
title: Occurrence Download

description: A dataset containing 239565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cisticola juncidis (Rafinesque, 1810)",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Country is one of (Germany, France, Spain, Portugal, Denmark, Austria, Italy, Switzerland, Greece, Poland, Hungary, Slovenia, Sweden, Norway, Slovakia, Montenegro, Croatia, North Macedonia, Serbia, Iceland, Ireland, United Kingdom of Great Britain and Northern Ireland, Albania, Bosnia and Herzegovina, Bulgaria, Belgium, Netherlands)"
 ]
}

 The dataset includes 239565 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168529-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnruzh
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geometra papilionaria (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 93 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189484-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8m2fd9
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Homoeogamia mexicana Burmeister, 1838"
 ]
}

 The dataset includes 165 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168533-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5acf7
title: Occurrence Download

description: A dataset containing 48099 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Sphagnum papillosum Lindb."
 ]
}

 The dataset includes 48099 records from 307 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200173-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id331943.1
title: StrainInfo SI-ID 331943.1

description: StrainInfo dataset 331943 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id331944.1
title: StrainInfo SI-ID 331944.1

description: StrainInfo dataset 331944 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id331945.1
title: StrainInfo SI-ID 331945.1

description: StrainInfo dataset 331945 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id331983.1
title: StrainInfo SI-ID 331983.1

description: StrainInfo dataset 331983 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id331984.1
title: StrainInfo SI-ID 331984.1

description: StrainInfo dataset 331984 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id331985.1
title: StrainInfo SI-ID 331985.1

description: StrainInfo dataset 331985 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id332061.1
title: StrainInfo SI-ID 332061.1

description: StrainInfo dataset 332061 about a strain of Fusarium verticillioides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id332062.1
title: StrainInfo SI-ID 332062.1

description: StrainInfo dataset 332062 about a strain of Fusarium verticillioides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id332063.1
title: StrainInfo SI-ID 332063.1

description: StrainInfo dataset 332063 about a strain of Fusarium verticillioides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id332064.1
title: StrainInfo SI-ID 332064.1

description: StrainInfo dataset 332064 about a strain of Fusarium verticillioides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id331986.1
title: StrainInfo SI-ID 331986.1

description: StrainInfo dataset 331986 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id331987.1
title: StrainInfo SI-ID 331987.1

description: StrainInfo dataset 331987 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id331988.1
title: StrainInfo SI-ID 331988.1

description: StrainInfo dataset 331988 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id331989.1
title: StrainInfo SI-ID 331989.1

description: StrainInfo dataset 331989 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id332065.1
title: StrainInfo SI-ID 332065.1

description: StrainInfo dataset 332065 about a strain of Fusarium verticillioides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id332066.1
title: StrainInfo SI-ID 332066.1

description: StrainInfo dataset 332066 about a strain of Fusarium verticillioides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id332067.1
title: StrainInfo SI-ID 332067.1

description: StrainInfo dataset 332067 about a strain of Fusarium verticillioides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id332146.1
title: StrainInfo SI-ID 332146.1

description: StrainInfo dataset 332146 about a strain of Neurospora intermedia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id332147.1
title: StrainInfo SI-ID 332147.1

description: StrainInfo dataset 332147 about a strain of Neurospora intermedia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id332148.1
title: StrainInfo SI-ID 332148.1

description: StrainInfo dataset 332148 about a strain of Neurospora intermedia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id331990.1
title: StrainInfo SI-ID 331990.1

description: StrainInfo dataset 331990 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id331991.1
title: StrainInfo SI-ID 331991.1

description: StrainInfo dataset 331991 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.