cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gh5jxr
title: Occurrence Download

description: A dataset containing 136200 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, United Kingdom of Great Britain and Northern Ireland, Portugal, Spain, France, Germany, Belgium, Netherlands, Italy, Greece, Denmark, Norway, Sweden, Finland, Svalbard and Jan Mayen, Estonia, Latvia, Lithuania, Türkiye, Russian Federation, Belarus, Ukraine, Moldova, Republic of, Switzerland, Austria, Poland, Czechia, Hungary, Slovakia, Romania, Bulgaria, Kazakhstan, Armenia, North Macedonia, Albania, Serbia, Montenegro, Kosovo, Bosnia and Herzegovina, Croatia, Slovenia, Cyprus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Myosotis laxa (Sam.) Hyl. ex Nordh."
 ]
}

 The dataset includes 136200 records from 725 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005766-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-106471
title: Biltmore flower show, unidentified location, 1942

description: 6 photographs of a victory garden and plants outside, along with a couple of interior flower arrangements, unidentified location, 1942 February 26. Negative no. 2 shows a victory garden complete with a large "V," an eagle and shield, with US flags. Writing on the negatives reads: on negative no. 5 "Primula malacoides," no. 3 "Anthuriums," and no. 6 "Azalea simii."
DOI: 10.15468/dl.6q0fof
title: Occurrence Download

description: A dataset containing 2273 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sisyrinchium micranthum Cav."
 ]
}

 The dataset includes 2273 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096192-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-52147
title: County Hospital installation, Drayer and Hanson, Incorporated, Los Angeles, CA, 1932

description: Photograph of installation of shelves at County Hospital, Los Angeles, CA, 1932. "Subject: County Hospital installation; Client: Drayer + Hanson Inc[orporated], 786 E[ast] Pico; Original Print Order: 1 ea[ch]; Size: 8 1/2x11, 8x10; Finish: linen, gl[ossy]; Re-Order: 1 each; Job: 9-8-31; Year: 1932" -- on envelope front. "Westmore 5101, Drayer & Hanson Inc[orporated], auto bodies, refrigerator trucks, C.G. Morrison, 738-744 East Pico Street, Los Angeles, Calif[ornia]" -- on business card front. "Operator's Report Name: Joe; Original Photographs-Size: 3-8 1/2x11 linen; 3 Ounces of Flash Powder: globs; Amount: 4.50, 1.50; Extra Charges: Morrison" -- on envelope back.
DOI: 10.25549/whit-c170-106722
title: Soldier walking w/ young lady, Los Angeles, Calif,. 1942

description: 10 photographs of a male soldier walking with a woman in front of a house, Los Angeles, California, 1942 March 2.
DOI: 10.15468/dl.jj1tui
title: Occurrence Download

description: A dataset containing 11311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drypetes Vahl",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11311 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096216-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9p43b
title: Occurrence Download

description: A dataset containing 223191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendrocygna javanica (Horsfield, 1821)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 223191 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005773-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-52325
title: County Hospital, Los Angeles, CA, 1932

description: 4 photographs of County Hospital, Los Angeles, CA, 1932. "Subject: County Hospital; Client: B.V. Collins, 1431 E[ast] 16[th] St[reet]; Original Print Order: 1 ea[ch]; Size: 8 1/2x11; Finish: linen; Job: 9-29-141; Year: 1932" -- on envelope front. "Operator's Report (Name): Frank; 4 Original Photographs-Size 8 1/2x11 linen; 2 Ounces of Flash Powder; Amount: 5.00, 1.70" -- on envelope back.
DOI: 10.15468/dl.ontfvl
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sisyrinchium soboliferum Ravenna"
 ]
}

 The dataset includes 29 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096217-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-109799
title: He & she in a field, etc., Los Angeles County, Calif., 1941

description: 13 photographs of a man and woman playing outdoors separately and together, probably in Los Angeles County, California, 1941 February 4. In 8 of the images she is alone. Together they: climb a fence, use the fence as a prop, and walk holding hands. Many of these negatives have yellow tape on them to mask off central images.
DOI: 10.15468/dl.c2gr7p
title: Occurrence Download

description: A dataset containing 10581 species occurrences available in GBIF matching the query:
{
 "GenusKey" : [
 "is Gonopterodendron (Griseb.) Godoy-Bürki"
 ]
}

 The dataset includes 10581 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005790-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-110062
title: Harbor scenes, Los Angeles, California, 1941

description: 4 photographs of the SS Lurline at Berth 156 at the Port of Los Angeles, with one image of the port with the Lurline in the distance, Los Angeles, California, 1941 February 7. A sign in the background reads, "Matson Oceanic Lines."
DOI: 10.15468/dl.umotli
title: Occurrence Download

description: A dataset containing 9703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dracaena Vand. ex L.",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Geometry POLYGON((-113.90625 29.535229,-115.312499 19.311143,-107.578124 -2.811371,-104.0625 -16.636191,-84.375 -4.214943,-72.421875 5.615985,-50.625 15.961329,-39.375 30.145127,-68.203125 34.307143,-113.90625 29.535229))",
 "Geometry POLYGON((-16.171875 30.145127,0.703125 30.751277,20.390625 28.921631,32.34375 27.059125,39.375 19.973348,42.890625 13.923403,53.4375 15.284185,53.4375 -51.618016,-23.203125 -48.458351,-24.609375 27.683528,-16.171875 30.145127))",
 "Geometry POLYGON((66.796875 25.165173,67.5 -4.915832,101.953125 -13.923403,130.078125 -25.799891,170.859375 -23.241346,176.484374 -10.487811,166.640625 18.646245,148.359375 28.921631,126.5625 31.353636,104.0625 31.353636,80.859374 32.546813,66.796875 25.165173))",
 "Geometry POLYGON((175.078125 30.145127,175.078125 -21.943045,240.46875 -21.943045,240.46875 30.145127,175.078125 30.145127))"
 ]
 },
 "HasCoordinate is true"
 ]
}

 The dataset includes 9703 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096193-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.17125934
title: Additional file 2 of Review of social networks of professionals in healthcare settings—where are we and what else is needed?

description: Appendix 10.
DOI: 10.6084/m9.figshare.20267646.v1
title: Additional file 3 of Transplantation of bacteriophages from ulcerative colitis patients shifts the gut bacteriome and exacerbates the severity of DSS colitis

description: Additional file 3: Supplementary Table S5. Differentially abundant bacterial species between healthy-HMA and UC-HMA mice. Related to Fig. 3.
DOI: 10.6084/m9.figshare.7164359
title: Additional file 1: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

description: Table S1. Primers used for qRT-PCR. (XLS 47 kb)
DOI: 10.6084/m9.figshare.20267652.v1
title: Additional file 5 of Transplantation of bacteriophages from ulcerative colitis patients shifts the gut bacteriome and exacerbates the severity of DSS colitis

description: Additional file 5: Supplementary Table S8. Differentially abundant viral scaffolds between VLP treatment groups. UC VLPs vs. PBS control, phage gavage period (tab 1). Healthy VLPs vs. PBS control (tab 2). Related to Fig. 5.
DOI: 10.6084/m9.figshare.21744204
title: Carbon storage and understory plant diversity in boreal Larix gmelinii–Carex schmidtii forested wetlands: A comparison of harvest, fire and draining disturbance

description: ABSTRACT Background: Forested wetlands are an important factor in carbon (C) sequestration. In this study, we compared the short-term effects (5 years) of three harvest intensities and two wildfire severities, and the mid-term effects (25 years) of four groundwater table depth (WTD) drainage for forestry on eco-system C storage and understory vegetation structures in Daxing’anling, northeast of China. Results: We found that: Low intensity harvest slightly enhanced ecosystem C storage, whereas moderate- and high-intensity harvest led to significant reductions (33.2-41.6%) in comparison with the control natural forested wetlands stand (274.54 t C·ha -1), and light and heavy burn caused the ecosystem C storage sig-nificant decreases by 27.8% and 45.2%. As for the drainage for forestry, the ecosystem C storage was higher at the low WTD (316.78 t C·ha -1), and diminished significantly by 24.1-28.1% with the increasing WTD on the forested wetland plantation transect. Compared with the control and high intensity harvest stands (8.28 t ha -1 yr -1, 5.08 t C·ha -1 yr -1 and 6.48 t ha -1 yr -1, 3.52 t C·ha -1 yr -1), significantly higher NPP (net primary productivity, defined by the biomass difference of two measurements) (69.1-83.2%) and annual C sequestration (52.0-78.7%) were observed in the low- and moderate-intensity harvest stands. Significant increases by 48.6% and decreases by 31.5% in NPP or by 52.9% in annual C sequestration were in light and heavy burn stands, respectively. In contrast, the NPP and annual C sequestration (3. 67-10. 34 t ha -1 yr -1 and 1. 59-4. 87 t C·ha -1 yr -1) showed a significant in-creasing trend with increasing WTD, respectively. The understory species diversity indices were generally lower in the harvest and burned stands than the control natural forested wetlands and more pioneer tree species regeneration occurred after the disturbances. Conclusion: Therefore, it seems that low intensity harvest and wildfire could sustain the ecosystem C sink and drainage for forestry is an effect way to restore C sequestration for this forested wetland type.
DOI: 10.6084/m9.figshare.17126107
title: Additional file 13 of Epigenetic modifications potentially controlling the allelic expression of imprinted genes in sunflower endosperm

description: Additional file 13. The Perl scripts for identification of imprinted genes.
DOI: 10.6084/m9.figshare.7164383.v1
title: Additional file 1: of Novel mutations in TPM2 and PIEZO2 are responsible for distal arthrogryposis (DA) 2B and mild DA in two Chinese families

description: Table S1. Primer used in this study (XLS 10 kb)
DOI: 10.6084/m9.figshare.17126107.v1
title: Additional file 13 of Epigenetic modifications potentially controlling the allelic expression of imprinted genes in sunflower endosperm

description: Additional file 13. The Perl scripts for identification of imprinted genes.
DOI: 10.6084/m9.figshare.17125880
title: Additional file 4 of Development and characterization of efficient xylose utilization strains of Zymomonas mobilis

description: Additional file 4: Table S5. List of all the significantly differentially expressed genes of different strains comparison in different sugar media.
DOI: 10.6084/m9.figshare.17125886
title: Additional file 6 of Development and characterization of efficient xylose utilization strains of Zymomonas mobilis

description: Additional file 6: Table S8. List of significantly differentially expressed genes in different functional categories comparing different strains in the same media or same strain cultured in different sugar media.
DOI: 10.6084/m9.figshare.17126113.v1
title: Additional file 2 of Epigenetic modifications potentially controlling the allelic expression of imprinted genes in sunflower endosperm

description: Additional file 2: Table S2. The summary of imprinted genes identified in 12 DAP sunflower endosperm.
DOI: 10.6084/m9.figshare.17126122
title: Additional file 5 of Epigenetic modifications potentially controlling the allelic expression of imprinted genes in sunflower endosperm

description: Additional file 5: Table S5. The summary of DMRs between embryo and endosperm.
DOI: 10.6084/m9.figshare.7164500.v1
title: Additional file 10: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Table S4. Differentially expressed genes in nrtp1-D. The expression levels of each gene in the table are the average of three replicates. (XLSX 526 kb)
DOI: 10.6084/m9.figshare.17125937
title: Additional file 3 of Review of social networks of professionals in healthcare settings—where are we and what else is needed?

description: Appendix 11 citation matrix.
DOI: 10.6084/m9.figshare.17125886.v1
title: Additional file 6 of Development and characterization of efficient xylose utilization strains of Zymomonas mobilis

description: Additional file 6: Table S8. List of significantly differentially expressed genes in different functional categories comparing different strains in the same media or same strain cultured in different sugar media.
DOI: 10.6084/m9.figshare.17125877
title: Additional file 3 of Development and characterization of efficient xylose utilization strains of Zymomonas mobilis

description: Additional file 3: Table S4. List of all the significantly differentially expressed genes in the three strains in response to the different sugar media.
DOI: 10.6084/m9.figshare.12931866
title: Annual and seasonal variability of net heat flux in the Northern Indian Ocean

description: We investigate the spatial and temporal variability of the net ocean–atmosphere heat flux (<i>Q</i><sub>net</sub>) over the Indian Ocean (north of 30 S) for the period 2005–2008, as estimated from remotely sensed observations. Net heat flux data are based on turbulent fluxes from the Institut Français pour la Recherche et l’Exploitation de la MER (IFREMER) and radiative fluxes, both shortwave (SW) and longwave (LW) as produced at the University of Maryland (UMD). Special attention is given to the Arabian Sea (AS) and the Bay of Bengal (BoB). The estimates are evaluated against the Research Moored Array for African–Asian–Australian Monsoon Analysis and Prediction (RAMA). Results are also compared to several widely used atmospheric re-analyses products such as the European Centre for Medium-Range Weather Forecasts (ECMWF) Re-Analysis-Interim (ERA-I), the ERA5, the Modern-Era Retrospective Analysis for Research and Applications (MERRA-2), and the Climate Forecast System Reanalysis (CFSR). It is demonstrated that satellite-based estimates of heat flux components are in better agreement with in-situ buoy observations than re-analysis-based products. As such, the satellite products can be instrumental in diagnosing model performance and utilized for addressing research issues related to atmospheric and oceanic dynamics in the Indian Monsoon. It was found that the mean <i>Q</i><sub>net</sub> is higher in the AS than in the BoB, yet the phase of their monthly time series is well correlated with ocean heat gain/loss extremes. We have also investigated the relationship between <i>Q</i><sub>net</sub> and Sea Surface Temperature (SST) (mixed layer temperature proxy) with respect to their consistency. It was found that over most of the open Indian Ocean, at least half of the seasonal SST magnitude is explained by the seasonal <i>Q</i><sub>net</sub>. Given the small (≤1 month) delay between an annual maximum of the seasonal mixed layer heat content rate of change and the seasonal <i>Q</i><sub>net</sub>, it is concluded that <i>Q</i><sub>net</sub> data presented in this paper are generally consistent with independently observed SST.
DOI: 10.6084/m9.figshare.12931866.v1
title: Annual and seasonal variability of net heat flux in the Northern Indian Ocean

description: We investigate the spatial and temporal variability of the net ocean–atmosphere heat flux (<i>Q</i><sub>net</sub>) over the Indian Ocean (north of 30 S) for the period 2005–2008, as estimated from remotely sensed observations. Net heat flux data are based on turbulent fluxes from the Institut Français pour la Recherche et l’Exploitation de la MER (IFREMER) and radiative fluxes, both shortwave (SW) and longwave (LW) as produced at the University of Maryland (UMD). Special attention is given to the Arabian Sea (AS) and the Bay of Bengal (BoB). The estimates are evaluated against the Research Moored Array for African–Asian–Australian Monsoon Analysis and Prediction (RAMA). Results are also compared to several widely used atmospheric re-analyses products such as the European Centre for Medium-Range Weather Forecasts (ECMWF) Re-Analysis-Interim (ERA-I), the ERA5, the Modern-Era Retrospective Analysis for Research and Applications (MERRA-2), and the Climate Forecast System Reanalysis (CFSR). It is demonstrated that satellite-based estimates of heat flux components are in better agreement with in-situ buoy observations than re-analysis-based products. As such, the satellite products can be instrumental in diagnosing model performance and utilized for addressing research issues related to atmospheric and oceanic dynamics in the Indian Monsoon. It was found that the mean <i>Q</i><sub>net</sub> is higher in the AS than in the BoB, yet the phase of their monthly time series is well correlated with ocean heat gain/loss extremes. We have also investigated the relationship between <i>Q</i><sub>net</sub> and Sea Surface Temperature (SST) (mixed layer temperature proxy) with respect to their consistency. It was found that over most of the open Indian Ocean, at least half of the seasonal SST magnitude is explained by the seasonal <i>Q</i><sub>net</sub>. Given the small (≤1 month) delay between an annual maximum of the seasonal mixed layer heat content rate of change and the seasonal <i>Q</i><sub>net</sub>, it is concluded that <i>Q</i><sub>net</sub> data presented in this paper are generally consistent with independently observed SST.
DOI: 10.6084/m9.figshare.19219182
title: Additional file 13 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 13: Table S3. The identified genes and subcellular localization results. The lists are in an alphabetic arrangement.
DOI: 10.6084/m9.figshare.19219203.v1
title: Additional file 16 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 16: Table S6. Homolog gene pairs identified. Green is the background colour of cells, including the homologous genes. The bidirectional best hits are used as homologous pairs here, noting some may not be true orthologs with each other. (a) Identified orthologs of glucosinolate-related genes of I. indigotica in 25 Brassicaceae species (b) Identified orthologs of glucosinolate-related genes of Arabidopsis in 25 Brassicaceae species.
DOI: 10.6084/m9.figshare.19219203
title: Additional file 16 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 16: Table S6. Homolog gene pairs identified. Green is the background colour of cells, including the homologous genes. The bidirectional best hits are used as homologous pairs here, noting some may not be true orthologs with each other. (a) Identified orthologs of glucosinolate-related genes of I. indigotica in 25 Brassicaceae species (b) Identified orthologs of glucosinolate-related genes of Arabidopsis in 25 Brassicaceae species.
DOI: 10.6084/m9.figshare.19219230.v1
title: Additional file 20 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 20: Supplementary Data 1. Protein sequences of AOP,and GSL-OH, used for phylogenetic tree construction in this study. This is the source file for Fig. S5. Detailed information can be found in Table S5b.
DOI: 10.6084/m9.figshare.7164518
title: Additional file 11: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Table S5. GO classification of differentially expressed genes. (XLSX 892 kb)
DOI: 10.6084/m9.figshare.7164491
title: Additional file 2: of Transcriptome sequencing of Pinus kesiya var. langbianensis and comparative analysis in the Pinus phylogeny

description: Table S1. Gene Ontology (GO) distributions for P. kesiya var. langbianensis. Table S2. SSR markers identified in 13 conifer species. Table S3. Gene Ontology (GO) distributions for shared orthologues in 13 conifer species. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7164500
title: Additional file 10: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Table S4. Differentially expressed genes in nrtp1-D. The expression levels of each gene in the table are the average of three replicates. (XLSX 526 kb)
DOI: 10.6084/m9.figshare.20267712
title: Additional file 2 of Identification of a cytokine-dominated immunosuppressive class in squamous cell lung carcinoma with implications for immunotherapy resistance

description: Additional file 2: Table S1. Publicly available data sets used in this study. Table S2. Tools and software used in this study. Table S3. Publicly available gene signatures used in the study. Table S4. Exhausted Immune classifier (167 genes) with significantly different expression between the Exhausted Immune class and the rest class. Table S5. Differently methylation comparison of the 216 CpG located in the promoters of 162 exhaustion related genes. Table S6. Correlation between gene expression and methylation in the 162 exhaustion related genes with differentially methylated promoter.
DOI: 10.6084/m9.figshare.7164545.v1
title: Additional file 13: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Figure S6. KEGG classification of differentially expressed genes. (XLS 247 kb)
DOI: 10.6084/m9.figshare.7164704.v1
title: Additional file 9: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Table S3. Expression levels of all genes. The expression levels (FPKM) of each gene in three replicates are shown. (XLSX 5889 kb)
DOI: 10.6084/m9.figshare.7164704
title: Additional file 9: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Table S3. Expression levels of all genes. The expression levels (FPKM) of each gene in three replicates are shown. (XLSX 5889 kb)
DOI: 10.6084/m9.figshare.17125978
title: Additional file 2 of Construction of a tunable promoter library to optimize gene expression in Methylomonas sp. DH-1, a methanotroph, and its application to cadaverine production

description: Additional file 2: Table S1.Predicted promoter sequences from the genome of Methylomonas sp. DH-1.