cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.703568.v2
title: The Dynamics of Creativity in Software Development

description: <strong>Abstract</strong>. Software is primarily developed for people by people and human factors must be studied in all software engineering phases. Creativity is the source to improvise solutions to problems for dominating complex systems such as software development. However, there is a lack of knowledge in what creativity is in software development and what its dynamics are. This study describes the current state of the research plan towards a theory on creativity in software development. More specifically, it (1) states the motivation for studying creativity in software development under a multidisciplinary view; it (2) provides a first review of the literature identifying the shortcomings in the field; it (3) proposes a research design, which includes rarely employed methods in software engineering. To understand creativity in software development will provide a better knowledge of the software construction process and how individuals intellectually contribute to the creation of better, innovative products. This paper is the final version, after peer review. Recommended citation: Daniel Graziotin, “The Dynamics of Creativity in Software Development”, 14th International Conference on Product-Focused Software Process Improvement (PROFES 2013) - Doctoral Symposium Proceedings, 12 June 2013, Paphos, Cyprus. figshare. DOI:10.6084/m9.figshare.703568. Available: http://figshare.com/articles/The_Dynamics_of_Creativity_in_Software_Development/703568. This publication should receive an ISBN number. If any, this description and the file will be updated.
DOI: 10.6084/m9.figshare.703896.v11
title: Impact of a hen egg in a rigid floor at 2000 mm/s

description: CASE B: Impact of a egg in a rigid floor at 2000 mm/s. Crack and spill of the yolk. The egg bounces Tests were performed by crashing the specimens on a rigid support. To evaluate the impact damage resistance, specimens were dropped from height levels varying in the range from 50 to 1500 mm with its subsequent change of the impact velocity. With the aim of visualize the impact event details, a high-speed camera MotionBLITZ Cube4 were used. The camera recording frequency was 1878 Hz, which represents a time resolution of 529 μs per frame. From the work "Computational and Experimental Approach of the Phenomenology in the Impact of a Hen Eggshell" by Jordi Marcé-Nogué, Marco A. Pérez, Lluís Gil, Bernat Vila, Josep Fortuny, Albert G. Selles and Àngel Galobart presented in the ICCM 2013 - International Conference on Computational Mechanics held in Prague July 8th of 2013.
DOI: 10.6084/m9.figshare.703545
title: Gaussian Job Archive for C4H4Pt(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.703546.v1
title: Gaussian Job Archive for C4H4Pt(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.703547.v1
title: Gaussian Job Archive for C4H4Au(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.703531
title: MSA of BMC shell protein homologues in Fuc operon of C. phytofermentans

description: These are the MSA of BMC shell protein homolouges. As you can see, it is quite well conserved.
DOI: 10.6084/m9.figshare.703538
title: Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen

description: Supplementary online materials belonging to the Genome Research manuscript "Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen" by de Jonge et al. (2013). The raw sequencing data and the <em>Verticillium dahliae</em> strain JR2 assembly are deposited at the NCBI under BioProject accessions PRJNA169154 and PRJNA175765 (APFD00000000) respectively. The whole genome assembly plus annotation (proteins and repetitive elements) are deposited here at figshare. This is version 1.5 of the JR2 <em>V. dahliae</em> assembly. Protein-coding gene annotation was performed using a combinatorial approach with the EvidenceModeler, implementing (trained) ab initio gene finders Augustus, GenemarkES and GlimmerHMM, protein alignments (by AAT) and transcript alignments (by combining RNA-Seq, genome-assisted Trinity and PASA). Ultimately, gene models were improved (to add UTR and alternative splicing) by PASA again and further updated by limited manual curation. Repeatmasking was performed with the RepeatMasker using a de novo, RepeatModeler trained/generated, repeat library incorporating RECON, RepeatScout and the Tandem Repeat Finder (TRF). Gene models with alternative names depicted in the gff3 and fasta files important for the manuscript are: <em>XLOC_009059</em> - evm.TU.contig34339.15 <em>XLOC_008951</em> - evm.TU.contig1569.345 <em>Ave1</em> - evm.TU.contig45503.197 All other XLOC** gene models can be directly found. de Jonge R, Bolton MD, Kombrink A, van den Berg GCM, Yadeta KA, Thomma BPHJ. 2013. Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen. Genome Research <em>In press</em> doi:10.1101/gr.152660.112
DOI: 10.6084/m9.figshare.703529
title: MSA of homologues of enzymes in Fuc BMC of C. phytofermentans

description: It was shown by Fan et al. (2010) that signal sequences responsible for recruitment of enzymes into Bacterial Microcompartment (BMCs). Here I present some of the potential signal sequence in Fuc operon in <em>C. phytofermentans</em> through bioinformatics analysis. Top homologues of different genera were selected for each enzyme found in Fuc operon of<em> C. phytofermentans</em>. From those regions selected (in black box), they are analysed using WebLogo 3.3 for sequence logos which will be useful for analysing the pattern.
DOI: 10.6084/m9.figshare.703538.v1
title: Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen

description: Supplementary online materials belonging to the Genome Research manuscript "Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen" by de Jonge et al. (2013). The raw sequencing data and the <em>Verticillium dahliae</em> strain JR2 assembly are deposited at the NCBI under BioProject accessions PRJNA169154 and PRJNA175765 (APFD00000000) respectively. The whole genome assembly plus annotation (proteins and repetitive elements) are deposited here at figshare. This is version 1.5 of the JR2 <em>V. dahliae</em> assembly. Protein-coding gene annotation was performed using a combinatorial approach with the EvidenceModeler, implementing (trained) ab initio gene finders Augustus, GenemarkES and GlimmerHMM, protein alignments (by AAT) and transcript alignments (by combining RNA-Seq, genome-assisted Trinity and PASA). Ultimately, gene models were improved (to add UTR and alternative splicing) by PASA again and further updated by limited manual curation. Repeatmasking was performed with the RepeatMasker using a de novo, RepeatModeler trained/generated, repeat library incorporating RECON, RepeatScout and the Tandem Repeat Finder (TRF). Gene models with alternative names depicted in the gff3 and fasta files important for the manuscript are: <em>XLOC_009059</em> - evm.TU.contig34339.15 <em>XLOC_008951</em> - evm.TU.contig1569.345 <em>Ave1</em> - evm.TU.contig45503.197 All other XLOC** gene models can be directly found. de Jonge R, Bolton MD, Kombrink A, van den Berg GCM, Yadeta KA, Thomma BPHJ. 2013. Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen. Genome Research <em>In press</em> doi:10.1101/gr.152660.112
DOI: 10.6084/m9.figshare.703545.v1
title: Gaussian Job Archive for C4H4Pt(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.703513
title: Enhancing Information Dissemination using Human Mobility in Realistic Environment

description: Dissemination of information in mobile adhoc networks has lately picked up lot of interest. Some studies argue that the dissemination in these networks should be constraint while some argue that it should not. Research has found that it depends on the type of the application that is considered. For example, dissemination of mobile viruses should definitely be contained however, dissemination of emergency information should not. Towards this, we would like to propose a mechanism for enhancing dissemination of information in mobile adhoc environment. We use the concept of metapoulation model, epidemic model, beamforming and the mobility results obtained after the mining the dataset provided by the D4D Organizers. In this paper we first propose addition of three latent states to the existing SIR model and then add beamforming concepts. In this paper, we study the transient states to see the evolution of number of devices having the information and the difference in the number of devices having the information when compared with different cases considered in this paper. Our results show that enhancement can be considerably achieved in terms of number of devices having the information.
DOI: 10.6084/m9.figshare.703531.v2
title: MSA of BMC shell protein homologues in Fuc operon of C. phytofermentans

description: These are the MSA of BMC shell protein homolouges. As you can see, it is quite well conserved.
DOI: 10.6084/m9.figshare.703529.v2
title: MSA of homologues of enzymes in Fuc BMC of C. phytofermentans

description: It was shown by Fan et al. (2010) that signal sequences responsible for recruitment of enzymes into Bacterial Microcompartment (BMCs). Here I present some of the potential signal sequence in Fuc operon in <em>C. phytofermentans</em> through bioinformatics analysis. Top homologues of different genera were selected for each enzyme found in Fuc operon of<em> C. phytofermentans</em>. From those regions selected (in black box), they are analysed using WebLogo 3.3 for sequence logos which will be useful for analysing the pattern.
DOI: 10.6084/m9.figshare.703531.v1
title: MSA of BMC shell protein homologues in Fuc operon of C. phytofermentans

description: These are the MSA of BMC shell protein homolouges. As you can see, it is quite well conserved.
DOI: 10.6084/m9.figshare.703513.v1
title: Enhancing Information Dissemination using Human Mobility in Realistic Environment

description: Dissemination of information in mobile adhoc networks has lately picked up lot of interest. Some studies argue that the dissemination in these networks should be constraint while some argue that it should not. Research has found that it depends on the type of the application that is considered. For example, dissemination of mobile viruses should definitely be contained however, dissemination of emergency information should not. Towards this, we would like to propose a mechanism for enhancing dissemination of information in mobile adhoc environment. We use the concept of metapoulation model, epidemic model, beamforming and the mobility results obtained after the mining the dataset provided by the D4D Organizers. In this paper we first propose addition of three latent states to the existing SIR model and then add beamforming concepts. In this paper, we study the transient states to see the evolution of number of devices having the information and the difference in the number of devices having the information when compared with different cases considered in this paper. Our results show that enhancement can be considerably achieved in terms of number of devices having the information.
DOI: 10.6084/m9.figshare.703529.v1
title: MSA of homologues of enzymes in Fuc BMC of C. phytofermentans

description: It was shown by Fan et al. (2010) that signal sequences responsible for recruitment of enzymes into Bacterial Microcompartment (BMCs). Here I present some of the potential signal sequence in Fuc operon in <em>C. phytofermentans</em> through bioinformatics analysis. Top homologues of different genera were selected for each enzyme found in Fuc operon of<em> C. phytofermentans</em>. From those regions selected (in black box), they are analysed using WebLogo 3.3 for sequence logos which will be useful for analysing the pattern.
DOI: 10.6084/m9.figshare.703161
title: Epidural morphine non-inferiority study

description: This is the full supplementary package for the trial "Efficacy of two doses of epidural morphine for post-cesarean delivery analgesia: a randomized non-inferiority trial" published in <em>Anesthesia & Analgesia</em>. All data and statistical code is included, allowing the user to fully replicate all of the analyses in the trial. <strong>See instructions.txt for all information.</strong>
DOI: 10.6084/m9.figshare.703163
title: Longitudinal Marijuana and Alcohol Useage Data

description: Data example consisting of marijuana joints smoked per day and daily alcohol use (yes, no) during 112 days of treatment on 65 adolescents who completed a pharmacotherapy trial for attention defecit hyperactivity disorder and substance use and who were regular users of both drugs at baseline.
DOI: 10.6084/m9.figshare.703161.v1
title: Epidural morphine non-inferiority study

description: This is the full supplementary package for the trial "Efficacy of two doses of epidural morphine for post-cesarean delivery analgesia: a randomized non-inferiority trial" published in <em>Anesthesia & Analgesia</em>. All data and statistical code is included, allowing the user to fully replicate all of the analyses in the trial. <strong>See instructions.txt for all information.</strong>
DOI: 10.6084/m9.figshare.703163.v1
title: Longitudinal Marijuana and Alcohol Useage Data

description: Data example consisting of marijuana joints smoked per day and daily alcohol use (yes, no) during 112 days of treatment on 65 adolescents who completed a pharmacotherapy trial for attention defecit hyperactivity disorder and substance use and who were regular users of both drugs at baseline.
DOI: 10.6084/m9.figshare.703127
title: Retinoid Cycle

description: This latex document shows the basic retinoid cycle
DOI: 10.6084/m9.figshare.703118
title: Talks on Learning methods in Bioinformatics (Education and Training)

description: The slides displayend in recent talks are shared here
DOI: 10.6084/m9.figshare.703126
title: Aged Retina

description: This latex document shows the effect of ageing on the rod-choriod complex. Atrophy of the chorio-capillaris reduces the blood flow and hence the concentration of available nutrients and ability to remove heat. The build up of hydrophobic material in Bruch’s increases its resistance to the flow of solutes. The complex age related changes to the RPE compromise retinoid recycling. The result of these changes is to elevate absolute thresholds and reduce the rate at which the rod photoreceptor can recover from a photic challenge. Ret means retinoid,[ ] concentration, hV a photon.
DOI: 10.6084/m9.figshare.703127.v1
title: Retinoid Cycle

description: This latex document shows the basic retinoid cycle
DOI: 10.6084/m9.figshare.703126.v2
title: Aged Retina

description: This latex document shows the effect of ageing on the rod-choriod complex. Atrophy of the chorio-capillaris reduces the blood flow and hence the concentration of available nutrients and ability to remove heat. The build up of hydrophobic material in Bruch’s increases its resistance to the flow of solutes. The complex age related changes to the RPE compromise retinoid recycling. The result of these changes is to elevate absolute thresholds and reduce the rate at which the rod photoreceptor can recover from a photic challenge. Ret means retinoid,[ ] concentration, hV a photon.
DOI: 10.6084/m9.figshare.703130.v1
title: Exploring possible mimicry of host immune genes by viruses

description: Pathway diagrams describing the regulation of Interferon-beta and the Major Immediate Early Promotor (MIE) of human Cytomegalovirus, obtained from a review of the published literature as part of the project work for our MSc in Genomics and Pathway Biology. This summary includes direct comparisons and phylogenetic trees exploring similarities in activating transcription factors. The pathways are presented in SBGN notation. This document has not been peer reviewed.
DOI: 10.6084/m9.figshare.703126.v1
title: Aged Retina

description: This latex document shows the effect of ageing on the rod-choriod complex. Atrophy of the chorio-capillaris reduces the blood flow and hence the concentration of available nutrients and ability to remove heat. The build up of hydrophobic material in Bruch’s increases its resistance to the flow of solutes. The complex age related changes to the RPE compromise retinoid recycling. The result of these changes is to elevate absolute thresholds and reduce the rate at which the rod photoreceptor can recover from a photic challenge. Ret means retinoid,[ ] concentration, hV a photon.
DOI: 10.6084/m9.figshare.703118.v1
title: Talks

description: The slides displayend in recent talks are shared here
DOI: 10.6084/m9.figshare.703056
title: Gaussian Job Archive for C2H4Ag(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.703055
title: Gaussian Job Archive for C2H4Pt(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.703056.v1
title: Gaussian Job Archive for C2H4Ag(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.702932
title: Vitis leaf photos

description: This is a dataset comprising photos of &gt;9,500 leaves representing &gt;1,200 different Vitis vinifera varieties. Vines are held at the USDA National Clonal Germplasm Repository in Winters, CA. File names correspond to vineyard position, which can be used identify the variety.
DOI: 10.6084/m9.figshare.701913
title: OGrady Lab Collections

description: This file details 100 Drosophila collection events made between November 1996 and September 2000. Relevant collection, access, import and export permits are appended. Species distribution maps, kmz files, and about 800 additional collections will be added in the future.
DOI: 10.6084/m9.figshare.703055.v1
title: Gaussian Job Archive for C2H4Pt(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.703118.v2
title: Talks on Learning methods in Bioinformatics

description: The slides displayend in recent talks are shared here
DOI: 10.6084/m9.figshare.702932.v1
title: Vitis leaf photos

description: This is a dataset comprising photos of &gt;9,500 leaves representing &gt;1,200 different Vitis vinifera varieties. Vines are held at the USDA National Clonal Germplasm Repository in Winters, CA. File names correspond to vineyard position, which can be used identify the variety.
DOI: 10.6084/m9.figshare.701554
title: Gaussian Job Archive for C2H4Pt(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.701553
title: Gaussian Job Archive for C2H4Pt(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.701554.v1
title: Gaussian Job Archive for C2H4Pt(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.701552
title: Colorado Adolescent Rearing Inventory

description: Colorado Adolescent Rearing Interview (CARI): The CARI interview is a detailed, self-reported, structured interview questioning abuse and/or neglect that an adolescent may have experienced. It is aimed at 13-19 year old boys and girls. The first section assesses neglect, the second section concerns antisocial/cruel and physical abuse and the third section asks about sexual abuse. The development of this interview was supported by Grants DA006941 and DA011015 from the National Institute on Drug Abuse, National Institutes of Health, USPHS. The interview is in the public domain. Contents: Introduction to the CARI CARI Instruction Manual and Full Interview with Answer Sheet CARI Entry Template (excel file) Shortened form of the CARI, the CARI-Questionnaire Crowley, T.J., Mikulich, S.K., Ehlers, K., Hall, S., Whitmore, E. (2003). Discriminative validity and clinical utility of an abuse-neglect interview for adolescents with conduct and substance use problems. The American Journal of Psychiatry,160, 1461-1469. *Note: Erin Parker is not an author of the CARI. She owns the figshare account used to upload the CARI documents and make them publicly available via a DOI.
DOI: 10.6084/m9.figshare.701913.v1
title: O'Grady Lab Collections (1-99)

description: This file details 100 Drosophila collection events made between November 1996 and September 2000. Relevant collection, access, import and export permits are appended.
DOI: 10.6084/m9.figshare.701552.v1
title: Colorado Adolescent Rearing Inventory

description: Colorado Adolescent Rearing Interview (CARI): The CARI interview is a detailed, self-reported, structured interview questioning abuse and/or neglect that an adolescent may have experienced. It is aimed at 13-19 year old boys and girls. The first section assesses neglect, the second section concerns antisocial/cruel and physical abuse and the third section asks about sexual abuse. The development of this interview was supported by Grants DA006941 and DA011015 from the National Institute on Drug Abuse, National Institutes of Health, USPHS. The interview is in the public domain. Contents: Introduction to the CARI CARI Instruction Manual and Full Interview with Answer Sheet CARI Entry Template (excel file) Shortened form of the CARI, the CARI-Questionnaire Crowley, T.J., Mikulich, S.K., Ehlers, K., Hall, S., Whitmore, E. (2003). Discriminative validity and clinical utility of an abuse-neglect interview for adolescents with conduct and substance use problems. The American Journal of Psychiatry,160, 1461-1469. *Note: Erin Parker is not an author of the CARI. She owns the figshare account used to upload the CARI documents and make them publicly available via a DOI.
DOI: 10.6084/m9.figshare.701553.v1
title: Gaussian Job Archive for C2H4Pt(2+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.701525
title: Data accompanying PLOS ONE article: "The Predictive Nature of Pseudoneglect for Visual Neglect: Evidence from Parietal Theta Burst Stimulation", by Alice Varnava, Martynas Dervinis, and Christopher D. Chambers. School of Psychology, Cardiff University.

description: The data and analyses layed out in this workbook are associated with the following paper published in PLOS ONE:<br>"The Predictive Nature of Pseudoneglect for Visual Neglect: Evidence from Parietal Theta Burst Stimulation"<br>DOI: 10.1371/journal.pone.0065851<br>AUTHORS: Alice Varnava; Martynas Dervinis; Christopher Chambers.<br>CORRESPONDING AUTHOR: Alice Varnava. VarnavaA@Cardiff.ac.uk
DOI: 10.6084/m9.figshare.701913.v2
title: O

description: This file details 100 Drosophila collection events made between November 1996 and September 2000. Relevant collection, access, import and export permits are appended. Species distribution maps, kmz files, and about 800 additional collections will be added in the next few weeks.
DOI: 10.6084/m9.figshare.701505
title: Gaussian Job Archive for C6H10O2S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.