cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.7616
title: iPhone Visibility Analysis R1

description: This is a spreadsheet that lists the functions available from the iPhone home screen(s) and rates them if they are graphically visible to the user at the top level. This information is used to calculate a percentage visibility score.
DOI: 10.24414/rob-gnss-oosa00bel
title: GNSS data of OOSA00BEL, Oostende, Belgium

description: Permanent GNSS station dataset as daily RINEX files
DOI: 10.6084/m9.figshare.c.3618431_d9
title: Additional file 14 of Comparison of statistical models for nested association mapping in rapeseed (Brassica napus L.) through computer simulations

description: Table S15. Phenotypes for the 50 RIL-NAM subpopulations in a scenario where QTLs = 50, h 2=0.8 with 25 replications. (TXT 2078 kb)
DOI: 10.17863/cam.17741
title: Research data supporting "Climate change, water stress and agriculture in the Indus Civilisation, 3000-1500 BC"

description: 1. Archaeological faunal bone phosphate stable oxygen isotope (δ18O) data : These data derive from bone phosphate samples taken from multiple faunal taxa excavated from five rural Indus Civlisation settlements: Masudpur I, Masudpur VII, Burj and Dabli-vas-Chugta and Alamgirpur. Faunal taxa include Bos indicus, Bubalus bubalis, Ovis aries and Capra hircus. The age of samples ranges from Early Harappan (ca 2800-2600 cal BC) to Early Historic (ca 500 cal BC - 100 AD). 2. Archaeological faunal tooth enamel stable oxygen isotope (δ18O) and stable carbon isotope (δ13C) data: These data derive from tooth enamel carbonate samples taken from multiple faunal taxa excavated from five rural Indus Civlisation settlements: Masudpur I, Masudpur VII, Burj and Dabli-vas-Chugta and Alamgirpur. Faunal taxa include Bos indicus, Bubalus bubalis, Ovis aries, Capra hircus, Antilope cervicapra, Bos gaurus and Bosephalus tragocamelus. The age of samples ranges from Early Harappan (ca 2800-2600 cal BC) to Early Historic (ca 500 cal BC - 100 AD). The data-set includes both bulk and intra-tooth samples. 3. Archaeological plant carbon stable oxygen isotope data δ13C: These data derive from charred crop remains excavated from several Indus Civlisation settlements: Masudpur I, Masudpur VII, Burj, Dabli-vas-Chugta,Tigrana, Mitathal and Harappa. Crop taxa include: Hordeum vulgare, Triticum aestivum, Vigna radiata, Vigna mungo, Macrotyloma uniflorum, Oryza sativa and Ziziphus mauritiana. Both raw δ13C and converted Δ13C data are available. The age of samples ranges from Early Harappan (ca 2800-2600 cal BC) to Early Historic (ca 500 cal BC - 100 AD). 4. Modern barley carbon stable oxygen isotope (δ13C) data: These data derive from modern barley (Hordeum vulgare) samples collected along a rainfall gradient of 200-1000 mm/year in north-western India (Haryana/Rajasthan/Punjab). The samples were collected with the aim of characterising the relationship between water availability and δ13C in this taxon in this region. The data-set also includes data on soils, irrigation regime, water-logging and salinity. 5. Modern Ziziphus carbon stable oxygen isotope (δ13C) data: These data derive from modern Ziziphus mauritiana and Ziziphus nummularia samples collected along a rainfall gradient of 200-1000 mm/year in north-western India (Haryana/Rajasthan/Punjab). The samples were collected with the aim of characterising the relationship between water availability and δ13C in these taxa in this region. The data-set also includes data on soils, irrigation regime and variety.
DOI: 10.4228/zalf.2016.331
title: Weather Data 2016, Muencheberg, Germany

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Institute of Landscape System Analysis. The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type (Lambrecht SYMNET/IND). In 2016, data have been collected for: soil temperatur in 20cm depth (°C); soil temperatur in 5cm depth (°C); soil temperatur in 50cm depth (°C); soil temperatur in 10cm depth (°C); soil temperatur in 100cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 2m above ground (°C); precipitation (mm); wind velocity (m/s); evaporation (mm).
DOI: 10.17863/cam.17133
title: Research data supporting "C2x: a tool for visualisation and input preparation for Castep and other electronic structure codes"

description: Source code and test suite of c2x v2.05 as submitted with the referenced paper. More recent revisions may be available from http://www.c2x.org.uk/
DOI: 10.6084/m9.figshare.c.3618431_d10
title: Additional file 12 of Comparison of statistical models for nested association mapping in rapeseed (Brassica napus L.) through computer simulations

description: Table S7. Genotypes for the 50 RIL-NAM subpopulations, where 0 and 2 denote the homozygous gentoype of parents, respectively, while 1 denotes the heterozygous genotype. (TXT 88,883 kb)
DOI: 10.6084/m9.figshare.c.3618464_d4
title: Additional file 5: Table S10. of Performance comparison of two commercial human whole-exome capture systems on formalin-fixed paraffin-embedded lung adenocarcinoma samples

description: Clinically actionable mutations within low coverage exons of database-prioritized cancer related genes. For each selected genomic interval the table reports the mean coverage and SD values in both Agilent SureSelect and Roche NimbleGen libraries, and the list of clinically actionable mutations belonging to that interval, retrieved from Gene-Drug Knowledge Database v9.0 [43]. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3618464_d5
title: Additional file 3: Table S7 and Table S8.  of Performance comparison of two commercial human whole-exome capture systems on formalin-fixed paraffin-embedded lung adenocarcinoma samples

description: Table S7. Mean coverage achieved by Agilent SureSelect and Roche NimbleGen libraries within 90 PCR-capture amplicons. Mean coverage ± SD within 90 regions amplified by AmpliSeq Colon and Lung Cancer Panel v.1 (Thermo Fisher Scientific) from ‘FF’, ‘FFPE’ and ‘FF plus FFPE’ samples achieved by Agilent SureSelect and Roche NimbleGen libraries respectively. In each column, the mean coverage values are reported for each amplicon, and the heat map was created using two-color scale (lowest value is represented by dark blue and highest value by dark red). Table S8. Variant calling comparison between the two WES systems (Agilent SureSelect and Roche NimbleGen) and the AmpliSeq Colon and Lung Cancer Panel. List of FFPE and matched FF samples genetic variants called by VC v.4.2 plugin on Ion PGMTM data and GATK pipeline in both exome capture systems. All variants are annotated with gene ID, locus, reference sequence, variant allele according to the hg19 Reference Genome. The red bars show the variant allele frequency (%) detected by VC on Ion pipeline and GATK on both Agilent SureSelect and Roche NimbleGen WES (0* means variant not called but found by IGV visual inspection of BAM files). All variants are annotated for COSMIC or dbSNP (rs number) together with the codons involved and the amino acid change (AA). The 'Effect' column reports if the variant is in a coding region, discerning between nonsynonymous, synonymous and non-sense, or in an intron, downstream the gene or in a splicing region. The last four columns of the table reports the Minor Allele Frequency (MAF) reported in the 1000 Genomes Project, the prediction effect on the protein based on SIFT and Polyphen algorithms and the conservation score namely GERP. For SIFT prediction, the higher the number, the lower is the effect, whereas for Polyphen prediction is the opposite. Thus, a higher score for GERP indicates a higher conservation of the gene across 34 mammalian species. Abbreviation: - not available data. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3618431_d11
title: Additional file 15 of Comparison of statistical models for nested association mapping in rapeseed (Brassica napus L.) through computer simulations

description: Table S16. Phenotypes for the 29 BC-NAM subpopulations in a scenario where QTLs = 50, h 2=0.5 with 25 replications. (TXT 1208 kb)
DOI: 10.6084/m9.figshare.c.3618431_d12
title: Additional file 6 of Comparison of statistical models for nested association mapping in rapeseed (Brassica napus L.) through computer simulations

description: Table S5. Genotypes for the 50 BC-NAM subpopulations, where 0 and 2 denote the homozygous gentoype of parents, respectively, while 1 denotes the heterozygous genotype. (TXT 88,883 kb)
DOI: 10.15454/aoatkg/gg0e4l
title: DataPhytoAssEnv.tab

description: Biomasse of phytoplankton community, and 5 phytoplankton assemblages described in Anneville and al., 2018.  Daphnia abundance, Phosphore concentration (0-20m), Solar radiation and water temperature (0-20m)
DOI: 10.6084/m9.figshare.c.3618431_d20
title: Additional file 9 of Comparison of statistical models for nested association mapping in rapeseed (Brassica napus L.) through computer simulations

description: Table S9. Phenotypes for the 50 BC-NAM subpopulations in a scenario where QTLs = 1 which interacted with 5 background markers, h 2=0.8, 0.5 of explained ratio by QTL Ă  genetic background interactions to the total genetic variance with 25 replications. (TXT 2078 kb)
DOI: 10.6084/m9.figshare.c.3618431_d21
title: Additional file 3 of Comparison of statistical models for nested association mapping in rapeseed (Brassica napus L.) through computer simulations

description: Table S21. A map file for the original SNPs. (TXT 31 kb)
DOI: 10.6084/m9.figshare.c.3618431_d22
title: Additional file 16 of Comparison of statistical models for nested association mapping in rapeseed (Brassica napus L.) through computer simulations

description: Table S17. Phenotypes for the 29 BC-NAM subpopulations in a scenario where QTLs = 25, h 2=0.8 with 25 replications. (TXT 1208 kb)
DOI: 10.6084/m9.figshare.c.3618500_d1
title: MOESM3 of Burden of malaria is higher among children in an internal displacement camp compared to a neighbouring village in the Democratic Republic of the Congo

description: Additional file 3 . SPSS file providing data for community-based survey.
DOI: 10.17863/cam.62078
title: Additional Materials of the Thesis “Investigating the cell surface code for compartment boundary formation in Drosophila embryos.” Thomas Edward Sharrock

description: Movie01: Imaging nascent mRNA directed by EnVT15159. Movie showing transcription from EnVT15159-pEve in the Drosophila embryonic ectoderm during germ-band extension. Maximum Intensity Projection (31x1μm stacks) of the MCP-GFP channel. Time resolution of 30s per frame. Anterior to Left, Ventral Down. Movie02: Gap43-mCherry reveals cell membranes. Movie showing Gap43-mCherry protein localising to cell membranes in the Drosophila embryonic ectoderm during germ-band extension. Maximum Intensity Projection (31x1μm stacks) of the Gap43-mCherry channel. Time resolution of 30s per frame. Anterior to Left, Ventral Down. Movie03: Blanketed projection of Gap43-mCherry. Movie showing projection of Gap43-mCherry signal following blanketing in oTracks. Maximum Intensity Projection (2x1μm stacks) of the most apical Gap43-mCherry signal. Time resolution of 30s per frame. Anterior to Left, Ventral Down. Movie04: Segmentation and Cell Tracking. Movie showing cell segmentation and cell tracking undertaken in otracks using the Gap43-mCherry signal. Time resolution of 30s per frame. Anterior to Left, Ventral Down. Movie05: Dot:Cell assignment. Movie showing EnVT15159 directed transcriptional dots assigned to cells in oTracks. Fire LUT of cell outlines indicates probability a cell has a transcriptional dot located within it (Red=Low Probability, Blue=High Probability). Underlaid is maximum intensity projection of MCP-GFP channel as described in Movie01. Time resolution of 30s per frame. Anterior to Left, Ventral Down. Movie06: Locating and quantifying straightness at PSBs. Movie showing PSBs located using the EnVT15159 directed transcriptional dots. Cell positions are represented by squares at each cell’s centroid. Squares are coloured dependent upon parasegment identity. At the boundary between parasegments is where PSB interfaces are located. Time resolution of 30s per frame. Anterior to Left, Ventral Down. Movie07: Marching boundary method. Movie showing the marching boundary process ran on oTracks. Boundary paths explore all possible paths across double parasegment repeats. The straightest, non-overlapping paths are chosen, and their index of straightness measures are plotted across a double parasegment coordinate system. Anterior Up, Posterior Down.
DOI: 10.6084/m9.figshare.c.3618500_d2
title: MOESM2 of Burden of malaria is higher among children in an internal displacement camp compared to a neighbouring village in the Democratic Republic of the Congo

description: Additional file 2 . SPSS file providing data for clinic-based survey.
DOI: 10.6084/m9.figshare.c.3618509_d1
title: Additional file 3: of How do researchers determine the difference to be detected in superiority trials? Results of a survey from a panel of researchers

description: Study dataset. (XLS 262 kb)
DOI: 10.17863/cam.51470
title: Research data supporting "Unprecedented Dipole Alignment in α-phase Nylon-11 Nanowires for High Performance Energy Harvesting Applications"

description: Research_support_non-Ferroelectric Nylon nw TENG.zip file contains original SEM images and experimental data in the main text of the manuscript and supporting information. The original SEM images contain original scales and beam conditions at which SEM images were taken. raw-data.xlsx contains data files for the graphs, such as XRD, DSC, KPFM, energy harvesting measurements and electrical characterization, discussed in the main text of the manuscript and the supporting information.
DOI: 10.4228/zalf.dk.104
title: Weather Data 2017, Muencheberg, Germany

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Institute of Landscape System Analysis. The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type (Lambrecht SYMNET/IND). In 2016, data have been collected for: soil temperatur in 20cm depth (°C); soil temperatur in 5cm depth (°C); soil temperatur in 50cm depth (°C); soil temperatur in 10cm depth (°C); soil temperatur in 100cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 2m above ground (°C); precipitation (mm); wind velocity (m/s); evaporation (mm).
DOI: 10.17863/cam.96643
title: Dataset for: Performance evaluation of mesoscopic photoacoustic imaging

description: This deposit primarily contains photoacoustic imaging data acquired using a commercial RSOM Explorer P50 system from iThera Medical GmbH. All data acquisition and analysis protocols are detailed in the associated publication and an overview of the data deposit can be found in the readme file.
DOI: 10.17863/cam.44164
title: Raw Data Supporting Article: Bias-free Solar Syngas Production by Integrating a Molecular Cobalt Catalyst with Perovskite–BiVO4 Tandems

description: The dataset contains the raw data that supports the findings of the study “Bias-free solar syngas production by integrating a molecular cobalt catalyst with perovskite-BiVO4 tandems”. This research project was conducted within the frame of the Christian Doppler Laboratory for Sustainable SynGas Chemistry. Data was collected using the instrumentation described in the Methods section of the study.
DOI: 10.6084/m9.figshare.c.3618548_d6
title: Additional file 4: of The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum

description: Comparative analysis of the abundance of RNA-binding domains in various organisms. (XLSX 191 kb)
DOI: 10.17863/cam.50243
title: Non-entrepreneur sample from: 'Inter-census record-linked entrepreneurs and non-entrepreneurs 1851-91 using BBCE and I-CeM'

description: Database download for record-linked census data 1851-61, and 1881-91 in England and Wales for a stratified quota random sample on non-entrepreneurs in 21 occupational sectors and five counties.
DOI: 10.6084/m9.figshare.c.3618548_d7
title: Additional file 2: of The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum

description: List of predicted RNA-binding proteins in P. falciparum. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.c.3618581_d1
title: Additional file 2: Table S2. of Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging

description: All genes DE with age. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3618566_d4
title: Additional file 3: Table S2. of Insights from the draft genome of the subsection V (Stigonematales) cyanobacterium Hapalosiphon sp. Strain MRB220 associated with 2-MIB production

description: BLAST comparison between Open reading frames of MRB 220 and those in query genomes. Table S3. Open reading frames present in the genome of MRB220 but not detected in the three most closely related Stigonematales. (XLSX 2467Â kb)
DOI: 10.6084/m9.figshare.c.3618581_d2
title: Additional file 8: Table S6. of Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging

description: The 137 longevity genes and the DAVID enrichments. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3618581_d3
title: Additional file 6: Table S5. of Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging

description: All genes altered in three comparisons. First, the extended longevity effect of CR switching to AL with lipoic acid. Next, the inhibitory effect lipoic acid had on extended longevity when switching from AL to CR feeding. Finally, the genes specific to CR feeding when switched to AL feeding with lipoic acid supplementation in comparison with the opposite switch which does not induce increased longevity. The DAVID enrichments are also included. (XLSX 157 kb)
DOI: 10.6084/m9.figshare.c.3618587_d1
title: MOESM1 of RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM® genes for hereditary disorders of hearing and balance

description: Additional file 1. Master table for Xenopus OMIM auditory and vestibular genes. This spreadsheet contains the list of OMIM® deafness and vestibular disorder genes, mappings to the JGI predicted proteins and Xl-PSID’S (E-value for alignment, E-value for expression, scaffold number and coordinates), RNA-Seq reads associated with each OMIM® gene and microarray GCRMA value for each OMIM® gene. The original data discussed in this publication have been deposited in NCBI’s Gene Expression Omnibus and can be accessed under GEO Series accession numbers GSE69701 (RNA-Seq) and GSE73829 (microarray).
DOI: 10.6084/m9.figshare.c.3618581_d4
title: Additional file 9: Table S7. of Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging

description: The 28 longevity genes that have been identified as longevity-associated genes (LAGs) or partners of LAGs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3618581_d5
title: Additional file 4: Table S3. of Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging

description: The overlap between genes DE when feeding CR and LA dietary supplementation at 28 months of age when compared with AL feeding the non-supplemented diet. It also shows the DAVID enrichment of the overlaps. (XLSX 375 kb)
DOI: 10.6084/m9.figshare.c.3618581_d6
title: Additional file 10: Table S8. of Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging

description: The primers, amplicons, and probes used in the qPCRs. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3618581_d8
title: Additional file 1: Table S1. of Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging

description: All the DAVID enrichments for each comparison. (XLSX 2288 kb)
DOI: 10.6084/m9.figshare.c.3618605_d1
title: Additional file 2: Table S1. of Nephrotoxicity of cisplatin combination chemotherapy in thoracic malignancy patients with CKD risk factors

description: The characteristics of the patients with or without AKI. (XLSX 14Â kb)
DOI: 10.17863/cam.7417
title: Research data supporting "Creating a Community of Data Champions"

description: This data supports the paper "Creating a Community of Data Champions" which will be presented at the 12th International Digital Curation Conference, Edinburgh, 20 - 23 February 2017. This dataset includes the original call for participants, the form they were asked to fill in, an anonymised spreadsheet of the applicants and the feedback forms used to support Data Champions. For a more detailed description of the dataset please see the README file.
DOI: 10.6084/m9.figshare.c.3618617_d8
title: MOESM1 of Prioritization of anti-malarial hits from nature: chemo-informatic profiling of natural products with in vitro antiplasmodial activities and currently registered anti-malarial drugs

description: Additional file 1. Natural products with in vitro antiplasmodial activities.
DOI: 10.17863/cam.95877
title: Final Putative Homologues of Spore Coat/Exosporium Proteins in Clostridia (GCM Thesis; Appendix 7.3)

description: &lt;&gt; Appendix 7.3 PDF file containing a list of final putative homologues in Clostridia species of established spore coat and exosporium proteins from literature. The listed data includes the protein name, bacterial species, accession number of that protein in that species, and the Markov Cluster number for that protein. Markov clustering was used to validate; edges were determined using reverse BLASTp protocol with SCPS edge-weight conversion: Refer to Appendix 7.1 and 7.2 for the first- and second- pass protocols. To verify the BLASTp homology search results, all putative proteins were analysed using MCL clustering with SCPS (spectral clustering of protein sequences) edge weight conversion of e-values. In addition to the raw homologue data, Clostridia coat proteins on UniProt (not identified in this analysis) were also included in the clustering dataset; this was done to verify their supposed identities. The inflation value was set at the recommended value of 0.2, and the edge-weight threshold was maximized. Edges were considered undirected so that only positive weights would be calculated. The clusterMaker2 application in the Cytoscape software was used to create the networks; the weak edge weight pruning threshold, number of iterations, maximum residual value, and maximum number of threads were set to their previously established values of 1E(−15), 16, 0.001, and 0—respectively. The MCL e-value threshold was set to 1E(−10) to minimize the number of proteins in each cluster. The resulting Q-value served as verification of the methodology. The overall Q value was 0.952. Refer to Appendix 7..4 for analysis of verified homologues.
DOI: 10.6084/m9.figshare.c.3618647_d1
title: MOESM3 of Simulating cyanobacterial phenotypes by integrating flux balance analysis, kinetics, and a light distribution function

description: Additional file 3. MATLAB file for simulating cyanobacterial performance in PBRs.