cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.unfxh9
title: Occurrence Download

description: A dataset containing 1557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hydrocotyle ranunculoides)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Unknown evidence, Machine Observation, Occurrence evidence)",
 "Year is greater than or equal to 2016",
 "Year is less than or equal to 2025",
 "HasCoordinate is true",
 "Country is United Kingdom of Great Britain and Northern Ireland"
 ]
}

 The dataset includes 1557 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033209-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qd47mm
title: Occurrence Download

description: A dataset containing 279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Metasequoia glyptostroboides"
 ]
}

 The dataset includes 279 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033211-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30104296.v2
title: DAG-info in leading medical journals

description: DAG-info in leading medical journals
DOI: 10.5281/zenodo.17609721
title: depmap_dependency_project2

description: Depmap Expression data curated for University of Sussex School of Life Sciences Year 3 Python course
DOI: 10.5281/zenodo.17609722
title: depmap_dependency_project2

description: Depmap Expression data curated for University of Sussex School of Life Sciences Year 3 Python course
DOI: 10.15468/dl.jvdt7m
title: Occurrence Download

description: A dataset listing the 2023 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Lebanon",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "PublishingOrg is b3bf3a83-1f68-4541-a03f-330d30d567f5",
 "TaxonKey is Insecta"
 ]
}

 The dataset's 2023 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033200-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jhgzxp
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lissotriton schmidtleri"
 ]
}

 The dataset includes 104 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033213-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tucqrx
title: Occurrence Download

description: A dataset containing 1317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Zootoca vivipara"
 ]
}

 The dataset includes 1317 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033214-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17609744
title: सतधारा Satdhārā (Raisen, Madhya Pradesh). Early inscriptions as documented by the Archaeological Survey of India

description: सतधारा Satdhārā (Raisen, Madhya Pradesh). Early inscriptions as documented by the Archaeological Survey of India, prepared for the excavation report in Hindi by Narain Vyas.
DOI: 10.5281/zenodo.17609745
title: सतधारा Satdhārā (Raisen, Madhya Pradesh). Early inscriptions as documented by the Archaeological Survey of India

description: सतधारा Satdhārā (Raisen, Madhya Pradesh). Early inscriptions as documented by the Archaeological Survey of India, prepared for the excavation report in Hindi by Narain Vyas.
DOI: 10.6084/m9.figshare.30620294
title: Data of_Lead Isotopic Fingerprinting of Anthropogenic and Natural Sources in Pan-Tibetan River Waters

description: <b>Data of "Lead Isotopic Fingerprinting of Anthropogenic and Natural Sources in Pan-Tibetan River Waters"</b>
DOI: 10.5281/zenodo.17609646
title: Test dataset public

description: test dataset public
DOI: 10.5281/zenodo.17609647
title: Test dataset public

description: test dataset public
DOI: 10.15468/dl.6s78xh
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ukraine",
 "Geometry POLYGON((30.68815 50.11654,30.68751 50.11571,30.68663 50.1105,30.68571 50.10298,30.68741 50.09958,30.70229 50.09659,30.71369 50.09839,30.7172 50.10009,30.72328 50.11113,30.72269 50.118,30.71311 50.11999,30.69588 50.12004,30.68815 50.11654))"
 ]
}

 The dataset includes 33 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033219-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30620294.v2
title: Data of_Lead Isotopic Fingerprinting of Anthropogenic and Natural Sources in Pan-Tibetan River Waters

description: <b>Data of "Lead Isotopic Fingerprinting of Anthropogenic and Natural Sources in Pan-Tibetan River Waters"</b>
DOI: 10.6084/m9.figshare.30620294.v1
title: Data of_Lead Isotopic Fingerprinting of Anthropogenic and Natural Sources in Pan-Tibetan River Watersm

description: <b>Data of "Lead Isotopic Fingerprinting of Anthropogenic and Natural Sources in Pan-Tibetan River Waters"</b>
DOI: 10.15468/dl.zp6y4f
title: Occurrence Download

description: A dataset containing 4840 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "Geometry POLYGON((-5.22964 47.21594,-2.99998 47.19811,-0.5091 47.21594,-0.5091 49.1275,-5.22964 49.1275,-5.22964 47.21594))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Apis mellifera"
 ]
}

 The dataset includes 4840 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033223-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.xd2547ddq
title: Data from: Social facilitation can impact the responses of free-ranging dogs (Canis lupus familiaris) towards physical cognitive tasks

description: Dogs are known to persist less in problem-solving tasks independently.
 While most of the studies so far have reported results based on
 experiments in pet dogs, conclusive evidence from free-ranging
 subpopulations is lacking. Free-ranging dogs are primarily scavengers and
 require problem-solving abilities to survive. We provided dogs with a
 familiar or an unfamiliar task in the presence of conspecifics. Both the
 tasks provided a single food-reward upon solving. We coded success,
 latency, and the duration of active engagement of the dogs in this study.
 We compared them with an earlier published dataset where individual dogs
 were tested in identical experimental set-ups. Our findings show that dogs
 have higher success rates in both the familiar and unfamiliar tasks when
 tested in the presence of conspecifics than when alone, 
 suggesting a role of social facilitation. Furthermore, the presence of
 conspecifics facilitated dogs to approach faster and engage longer in the
 unfamiliar task than when tested alone. We provide the first evidence that
 social facilitation may play a crucial role in free-ranging dogs,
 especially in the context of problem-solving.
description: Field based experiments.
DOI: 10.5061/dryad.wh70rxwk0
title: A new method for integrating ecological niche modeling with phylogenetics to estimate ancestral distributions

description: Ancestral range estimation and projection of niche models into the past
 have both become common in evolutionary studies where the ancient
 distributions of organisms are in question. However, these methods are
 hampered by complementary hurdles: discrete characterization of areas in
 ancestral range estimation can be overly coarse, especially at shallow
 timescales, and niche model projection neglects evolution. Phylogenetic
 niche modeling accounts for both of these issues by incorporating
 knowledge of evolutionary relationships into a characterization of
 environmental tolerances. We present a new method for phylogenetic niche
 modeling, implemented in R. Given past and present climate data, taxon
 occurrence data, and a time-calibrated phylogeny, our method constructs
 niche models for each extant taxon, uses ancestral character estimation to
 reconstruct ancestral niche models, and projects these models into
 paleoclimate data to provide a historical estimate of the geographic range
 of a lineage. Models either at nodes or along branches of the phylogeny
 can be estimated. We demonstrate our method on a small group of
 dendrobatid frogs and show that it can make inferences given species with
 restricted ranges and little occurrence data. We also use simulations to
 show that our method can reliably reconstruct the niche of a known
 ancestor in both geographic and environmental space. Our method brings
 together fields as disparate as ecological niche modeling, phylogenetics,
 and ancestral range estimation in a user-friendly package.
description: The empirical component was made using a time calibrated tree of
 the <em>Ameerega bassleri </em>group (see Guillory et al. 2020
 Mol Phy Evol), occurrence data, and present-day and past climate layers,
 run through the R package <em>machuruku.</em>
 The simulation component was run using custom R scripts as well
 as the materials used above. See the files for the code used.
description: README.txt files are included in each ZIP archive with
 explanations. The R code provided is heavily annotated.
DOI: 10.5061/dryad.gf1vhhmkv
title: Data from: The global diversity and distribution of lizard clutch sizes

description: Aim. Clutch size is a key life-history trait. In lizards, it ranges over
 two orders of magnitude. The global drivers of spatial and phylogenetic
 variation in clutch have been extensively studied in birds, but such tests
 in other organisms are lacking. To test the generality of latitudinal
 gradients in clutch size, and their putative drivers, we present the first
 global-scale analysis of clutch sizes across of lizard taxa. Location,
 Global Time period. Recent Major taxa studied. Lizards (Reptilia,
 Squamata, Sauria) Methods. We analysed clutch-size data for over 3900
 lizard species, using phylogenetic generalized least-square regression to
 study the relationships between clutch sizes and environmental
 (temperature, precipitation, seasonality, primary productivity,
 insularity) and ecological factors (body mass, insularity, activity times,
 and microhabitat use). Results. Larger clutches are laid at higher
 latitudes and in more productive and seasonal environments. Insular taxa
 lay smaller clutches on average. Temperature and precipitation per se are
 unrelated to clutch sizes. In Africa, patterns differ from those on other
 continents. Lineages laying small fixed clutches are restricted to low
 latitudes. Main conclusions. We suggest that the constraint imposed by a
 short activity season coupled with abundant resources is the main driver
 of large-clutch evolution at high latitudes and highly seasonal regions.
 We hypothesize that such conditions―which are unsuitable for species
 constrained to laying multiple small clutches―may limit the distribution
 of fixed-clutch taxa.
description: Data were obtained from the literature and from the authors'
 observation in the field, the lab and museums
DOI: 10.5061/dryad.j3tx95x9q
title: Data from: The ecological stage changes benefits of mate choice and drives preference divergence

description: Preference divergence is thought to contribute to reproductive isolation.
 Ecology can alter the way selection acts on female preferences, making
 them most likely to diverge when ecological conditions vary among
 populations. We present a novel mechanism for ecologically dependent
 sexual selection, termed ‘the ecological stage’ to highlight its
 ecological dependence. Our hypothesized mechanism emphasizes that males
 and females interact over mating in a specific ecological context, and
 different ecological conditions change the costs and benefits of mating
 interactions, selecting for different preferences in distinct environments
 and different male traits, especially when traits are condition dependent.
 We test key predictions of this mechanism in a sympatric threespine
 stickleback species pair. We used a maternal half-sib split-clutch design
 for both species, mating females to attractive and unattractive males, and
 raising progeny on alternate diets that mimic the specialized diets of the
 species in nature. We estimated the benefits of mate choice for an
 indicator trait (male nuptial color) by measuring many fitness components
 across the lifetimes of both sons and daughters from these crosses. We
 analyzed fitness data using a combination of aster and mixed models. We
 found that many benefits of mating with high color males depended on both
 species and diet. These results support the ecological stage hypothesis
 for stickleback. Finally, we discuss the potential role of this mechanism
 for other taxa and highlight its ability to enhance reproductive isolation
 as speciation proceeds, thus facilitating the evolution of strong
 reproductive isolation.
description: We provide all data and code necessary to recreate the results
 presented in the manuscript. ReadMe files are also provided for each aster
 model in the manuscript (survival, fecundity, mating).
DOI: 10.6086/d1nh38
title: Data from: Floral bagging differentially affects handling behaviors and single-visit pollen deposition by honey bees and native bees

description: Measurements of pollinator performance are crucial to pollination studies,
 enabling researchers to quantify the relative value of different
 pollinator species to plant reproduction. One of the most widely employed
 measures of pollinator performance is single-visit pollen deposition, the
 number of conspecific pollen grains deposited to a stigma after one
 pollinator visit. To ensure a pollen-free stigma, experimenters must first
 bag flowers before exposing them to a pollinator. Bagging flowers,
 however, may unintentionally manipulate floral characteristics to which
 pollinators respond. In this study, we quantified the effect of bagging on
 nectar volume in watermelon (*Citrullus lanatus*) flowers, and how this
 affects pollinator performance and behavior. Experimental bagging resulted
 in roughly 30-fold increases in nectar volume relative to unmanipulated,
 open-pollinated field flowers after only a few hours. Honey bees, but not
 native bees, consistently displayed elevated handling times and
 single-visit pollen deposition on unmanipulated bagged flowers relative to
 those from which we removed nectar to mimic volumes in open-pollinated
 flowers. Furthermore, we identify specific bee foraging behaviors during a
 floral visit that account for differences in pollen deposition, and how
 these differ between honey bees and native bees. Our findings suggest
 thatexperimental bagging of flowers, without accounting for artificially
 accumulated nectar, can lead to biased estimates of pollinator performance
 in pollinator taxa that respond strongly to nectar volume. We advise that
 pollination studies be attentive to nectar secretion dynamics in their
 focal plant species to ensure unbiased estimates of pollinator performance
 across multiple pollinator species. 
description: The data file contains five sheets: four sheets containing the
 actual data, plus a "metadata" tab describing the variables in
 the other four sheets.
DOI: 10.5061/dryad.rn8pk0p6r
title: Crossing extreme habitat boundaries: Jack-of-all-trades facilitates invasion but is eroded by adaptation to a master-of-one

description: The invasion of new environments can be a key instigator of adaptive
 diversification, but the likelihood of such invasions succeeding can
 depend on the attributes of would-be invaders. Chief among these seems to
 be a generalist or ‘jack-off-all-trades’ phenotype. Yet, despite the
 obvious link between habitat transitions and adaptation, we know
 surprisingly little about how phenotypes that might initially allow taxa
 to transition between habitats subsequently evolve or influence
 post-invasion differentiation. We tested how a generalist phenotype of a
 broad diet and behavioral plasticity in marine blenny fishes has
 facilitated the repeated invasion of extreme environments—particularly
 land—and how the conditions post-invasion have impacted that generalist
 phenotype and associated trophic morphology. Our data show that a wide
 diet and plasticity in being able to shift between environments freely has
 been instrumental in the progressive invasion of land by amphibious
 blennies. Once established, however, terrestrial blennies have experienced
 strong stabilising selection for a restricted diet, little to no
 plasticity and a highly specialised morphology. Instead of promoting
 diversification, the invasion of land appears to offer only a limited
 niche for survival, constraining descendent blennies to a specific
 adaptive phenotype. While our study supports the view that generalism
 facilitates invasion and that habitat transitions instigate adaptation, it
 also shows a generalist strategy is not optimal for successful
 establishment and new environments may offer fewer (not more)
 opportunities for diversification. This has broad implications for how
 taxa might be expected to respond or adapt to abrupt environmental change
 more generally.
DOI: 10.5061/dryad.rr4xgxd62
title: Highways associated with expansion of boreal scavengers into the alpine tundra of Fennoscandia

description: 1) Habitat fragmentation may affect species distributions through, for
 example, altered resource availability and shifts in species
 interactions. Fragmentation by roads has had negative impacts on
 Fennoscandian alpine ecosystems, with reduction of habitats and
 connectivity for alpine species. Concurrently, infrastructure development
 cause influx of subsidies through roadkills and litter, which may
 facilitate expansion of boreal scavenging species, such as the red fox
 (Vulpes vulpes), which may intensify negative interactions with alpine
 species. Hence, understanding the impact of subsidies within marginal
 alpine areas is imperative for successful conservation and management of
 particularly vulnerable alpine species. 2) We used snow tracking and
 camera traps in three alpine tundra areas in Norway to investigate whether
 the presence of boreal scavengers were positively associated with highways
 during winter, and if this contrasted the pattern of a critically
 endangered alpine species, the Arctic fox (Vulpes lagopus). In summer,
 artificial nests were used to assess whether predation risk was related to
 proximity to highways. 3) During winter, the occurrence of red foxes was
 higher close to highways and decreased with increasing distance to
 highways, while the arctic fox showed no discernible pattern. Red fox
 occurrence increased with the number of edible items of anthropogenic
 origin located along highways, whereas arctic fox occurrence decreased. 4)
 The overall predation risk of artificial nests during summer was high
 (&gt; 31.2%) and increased with proximity to the highway in the area
 with highest traffic volume. Synthesis and applications: Highways crossing
 alpine areas may attract boreal scavengers, possibly connected to
 increased access to subsidies of anthropogenic origin. Litter and food
 waste dominated available subsidies along highways in our study, and
 prevailing mitigating measures directed at reducing roadkill and movement
 restrictions may not be applicable to reduce negative effects of
 littering. We recommend actions focusing on informational campaigns,
 improved garbage disposal facilities and routines, and imposing fines for
 littering, to reduce negative impacts on vulnerable species. This is
 likely needed to achieve goals of “no impact” from the physical loss of
 habitats due to road development.
description: The data set includes snow tracking data on red fox and arctic
 fox, camera trap data on corvid detection/non-detection, and experimental
 nest predation data along line transects at varying distances
 from highways crossing three alpine tundra areas in Fennoscandia. See
 ReadMe for further details.
DOI: 10.5061/dryad.dz08kprv9
title: Structure-activity mapping of ARHGAP36 reveals regulatory roles for its GAP homology and C-terminal domains

description: ARHGAP36 is an atypical Rho GTPase-activating protein (GAP) family member
 that drives both spinal cord development and tumorigenesis, acting in part
 through an N-terminal motif that suppresses protein kinase A and activates
 Gli transcription factors. ARHGAP36 also contains isoform-specific
 N-terminal sequences, a central GAP-like module, and a unique C-terminal
 domain, and the functions of these regions remain unknown. Here we have
 mapped the ARHGAP36 structure-activity landscape using a deep
 sequencing-based mutagenesis screen and truncation mutant analyses. Using
 this approach, we have discovered several residues in the GAP homology
 domain that are essential for Gli activation and a role for the C-terminal
 domain in counteracting an N-terminal autoinhibitory motif that is present
 in certain ARHGAP36 isoforms. In addition, each of these sites modulates
 ARHGAP36 recruitment to the plasma membrane or primary cilium. Through
 comparative proteomics, we also have identified proteins that
 preferentially interact with active ARHGAP36, and we demonstrate that one
 binding partner, prolyl oligopeptidase-like protein, is a novel ARHGAP36
 antagonist. Our work reveals multiple modes of ARHGAP36 regulation and
 establishes an experimental framework that can be applied towards other
 signaling proteins.
description: Data was generated from NIH-3T3
 fibroblasts expressing a Gli-dependent green-fluorescent reporter that
 were retrovirally transduced with a library of mCherry-tagged ARHGAP36
 isoform 2 variants. Cells expressing an ARHGAP36 mutant were isolated
 using a fluorescence-activated cell sort (FACS) based on mCherry
 fluorescence. A population of ARHGAP36-expressing cells were maintained as
 a “pre-selection” population, while the remaining cells were cultured in
 Hedgehog signaling-competent conditions. Cells harboring ARHGAP36 mutants
 that could not activate Gli proteins were isolated using FACS for
 mCherry+/EGFP– cells (post-selection population). Inactivating point
 mutations were identified by amplifying <i>ARHGAP36
 </i>inserts from the genomic DNA of isolated cell populations and
 sequencing the resulting 1.6-kb amplicons on an Illumina NextSeq 500
 Sequencer using High-Output v2 kits to produce paired-end, 150-bp reads.
 FASTQ files were processed by first using Bowtie v2.3 to align reads to an
 index built from the wild-type <i>ARHGAP36</i> coding sequence
 (MtInsert_2_Amplicon_ARHGAP36.fasta). SAMtools v1.3.1 was used to sort the
 mapped reads by name and convert to a SAM file format. A custom Python
 script was used to calculate nucleotide and amino acid mutation
 frequencies.