cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20455180.v1
title: Factors related to apical periodontitis in a southern Brazilian population: a multilevel analysis

description: Abstract The aim of this cross-sectional study was to evaluate the effects of individual-level and tooth-level factors on apical periodontitis (AP) in an urban population in southern Brazil. A random sample of digital panoramic radiographs (n = 545) from a dental school database was evaluated. The diagnosis of AP was determined by using a dichotomous scale (yes/no). AP was assessed according to gender, age, presence and quality of endodontic treatment (ET), presence of an intracanal post, coronal condition, and dental group. Data were analyzed descriptively and through multilevel Poisson regression analysis, considering teeth characteristics (level 1) nested in individuals (level 2). In this sample of 545 participants, the prevalence of AP was 49.5% (n =2 70) and ET was 43.5% (n = 237). Considering 13,595 teeth, AP was identified in 596 (4.4%) and ET in 617 (4.5%). Of the teeth with ET, 153 (24.8%) presented AP. Among individual-level factors, the disease was not significantly associated with gender or age. For tooth-level factors, AP was significantly associated with ET quality: teeth with short ﬁllings (&lt; 3 mm) and teeth with over-fillings had 2.77 (CI: 1.95–3.94, p &lt; 0.001) and 1.08 (CI: 0.39–2.98, p &lt; 0.001) higher prevalence of AP, respectively. There was no association between AP and age, gender, dental group, coronal condition, or the presence of an intracanal post. AP was highly prevalent in this population, and multilevel analysis indicated a significant association with ET quality.
DOI: 10.6084/m9.figshare.25492831.v1
title: Deidentified datasets SCV2 HHT.csv

description: This dataset was used to assess various factors associated with household transmission of SARS-CoV-2 on both an individual and household level.
DOI: 10.6084/m9.figshare.27311163.v1
title: Takagi_and_Ohashi_data.zip

description: 1. Pollinating insects often exhibit flower constancy, i.e., the tendency to make consecutive visits to the same flower species while disregarding others. This behaviour is commonly attributed to the cost of retrieving visual or motor memories from long-term storage while switching between flowers with distinct colours and shapes. Accordingly, researchers often predict co-flowering species to exhibit significantly greater phenotypic diversity than random expectation, thereby minimizing heterospecific pollen transfer. However, field observations have not consistently supported this notion.<br>2. The observed inconsistencies may arise from variations in travel costs, which depend on the interaction between the forager's constancy level and the spatial mixing of plant species. If species are evenly mixed, constant pollinators incur higher levels of travel cost due to frequent skipping of neighbouring flowers. In contrast, if species are patchily distributed, constant pollinators experience lower levels of travel cost, as most neighbours are of the same species. Considering this, ‘realized flower constancy’ may be determined as an optimal strategy for balancing cognitive and travel costs, which dynamically vary across different degrees of spatial species mixing. Here we test this possibility in indoor experiments with bumble bees foraging from two differently coloured artificial flowers ('species') arranged at three mixing levels.<br>3. First, bees dramatically reduced flower constancy as species mixing increased, irrespective of flower spacing. Second, bees were less inclined to switch species after accumulating consecutive visits to one species, suggesting a rapid decay of another species’ information in short-term memory back to long-term storage. This effect may have additionally contributed to the increased flower constancy observed in species with patchy distributions. Third, bees showed minimal constancy for similarly coloured, evenly mixed flower species, suggesting that these flowers were operated with shared short-term memory. The constancy level was hardly affected by colour similarity when species were patchily distributed.<br>4. Results support our initial hypothesis that realized flower constancy reflects an optimal foraging strategy rather than a fixed outcome of cognitive limitation. Notably, bees' constancy increased significantly with greater colour difference only when species were evenly mixed, suggesting a novel perspective: spatial mixing promotes the evolution and maintenance of floral diversity.
DOI: 10.6084/m9.figshare.28822670.v1
title: Supplementary Material for: Effects of Neuromuscular Electrical Stimulation on Chronic Dysphagia in a Single Subject After Anterior Cervical Discectomy and Fusion Surgery: A Case Report

description: Background: The purpose of this single subject study was to describe the dysphagia presentation, treatment course, and post-treatment swallowing function in a patient with chronic dysphagia after anterior cervical discectomy and fusion (ACDF) surgery.
Case Presentation: An 83-year-old male experienced dysphagia &gt;2 months post-ACDF. The patient presented with a narrowed pharyngoesophageal segment (PES) due to cervical hardware and reduced epiglottic inversion due to pharyngeal narrowing on videofluoroscopic swallow study (VFSS). He completed dysphagia therapy using neuromuscular electrical stimulation (NMES). Structural alterations and a complicated medical course after treatment impacted therapeutic outcomes. Reductions in penetration or aspiration and improved hyoid excursion were found post-treatment, though impairment persisted. The patient ended therapy after the post-treatment VFSS and began to experience odynophagia and submental pain. The patient experienced a complicated post-treatment course including bilateral cancerous masses at the base of tongue with subsequent surgery and chemoradiation. 
Conclusions: While considered rare, these findings present a post-operative course of chronic dysphagia post-ACDF surgery where morphological changes to the pharynx significantly altered swallowing function. Swallowing function should be tracked routinely and longitudinally in post-ACDF surgery patients. NMES may be a potential dysphagia therapy modality to explore.
DOI: 10.6084/m9.figshare.8099924.v1
title: Supplementary Material for: Whole-Genome Sequencing and Genomic Analysis of a Virulent Bacteriophage Infecting <b><i>Bacillus cereus</i></b>

description: <b><i>Objective:</i></b> Infants with a weak immune system are prone to infection with <i>Bacillus cereus</i>, which is commonly found in natural environments. With the aim of achieving better control of this pathogenic bacterium, in the present study we characterized a new bacteriophage, ΦBC01. <b><i>Methods:</i></b> Bacteriophage particles were analyzed by transmission electron microscopy. Factors influencing adsorption were identified in a double-layer plaque assay. Sodium dodecyl sulfate polyacrylamide gel electrophoresis was conducted to determine the size of major structural proteins. The complete genome of the phage was analyzed. <b><i>Results:</i></b> Bacteriophage particles (105.3 ± 3.1 nm icosahedral head and 208.8 ± 3.6 nm contractile tail) were identified as Myoviridae. ΦBC01 was found to have host specificity to <i>B. cereus</i>. Major structural proteins of ΦBC01 showed 2 well-pronounced bands of 99 and 56 kDa. The 158,385-bp genome sequence of ΦBC01 was determined: 56 of the 239 open reading frames were annotated, indicating involvement in bacteriophage DNA manipulation, cell lysis, packaging, virion structure, and other functions. <b><i>Conclusion:</i></b> Because of characterization and genotyping of a new bacteriophage from soil samples containing earthworms, this study provides a baseline for the development of alternatives to antibiotics.
DOI: 10.17632/s44bj88rx2
title: Bibliometric dataset of pillared clays (PILCs) as retrieved from Scopus and Web of Science databases: research trends

description: The data correspond to metadata retrieved from the main databases (Scopus and WoS) of scientific publications on pillared clays (PILCs) used in chemical and environmental processes from 1980 to 2019. These data allow visualizing the research trends on the use of PILCs in catalytic processes over the last 40 years. The file named "PILCs 1980-2019.csv or PILCs 1980-2019.txt or PILCs 1980-2019.xml" allows text and data mining on the scientific productions of pillared clays. The thesaurus is composed of metadata extracted from the titles, abstracts, authors, affiliations (institutions) and keywords of publications related to PILCs. The data were filtered, standardized, double-counted documents and homonyms (institutions and authors) were removed. Thus, this thesaurus allows text mining to identify lines of research, catalytic uses and environmental applications of pillared clays. The scientific community working on the synthesis and characterization of layered solids, such as clays, can benefit from the information contained in this metadata. The data allow the identification of the most important applications of PILCs, as well as provide information of the scientific production of PILCs over the last four decades. The data also allow scientific mapping such as co-authorship networks, cooperation between countries and continents, authors and institutions that publish the most on pillared clays. In addition, it is possible to identify frequently used keywords, characterization and synthesis techniques, as well as areas of knowledge and journals of major interest on PILCs.
DOI: 10.17632/vr9wztmfxg
title: RPi model device identification

description: Execution time-based performance dataset for RPi model identification
DOI: 10.6084/m9.figshare.27019174.v1
title: Dados_PL violência contra as mulheres_2023_2024.xlsx

description: Pesquisa sobre proposições legislativas em tramitação na Câmara dos DeputadosFonte: Sistema de Informação Legislativa - Câmara dos DeputadosData/hora da pesquisa: 17/06/2024 12:32:53Parâmetros de busca: ---[ Numeração da Proposição ]---[Tipo da Proposição] está em ('PL','PLP','PRC','PDC','PEC','MPV','PLV','PDL') E[Pesquisar também nos documentos de origem] = SIM(E)---[ Ativas e Inativas ]---[Pesquisar somente proposições ATIVAS] = SIM(E)---[ CESTA UNIÃO ]------[ Pesquisa Textual ]---[Ementa] contém '"violência contra a mulher" OR "violência de gênero" OR "Lei Maria da Penha" OR "violência contra meninas"' OU [Explicacao da Ementa] contém '"violência contra a mulher" OR "violência de gênero" OR "Lei Maria da Penha" OR "violência contra meninas"' OU [Indexação] contém '"violência contra a mulher" OR "violência de gênero" OR "Lei Maria da Penha" OR "violência contra meninas"'<br>
DOI: 10.6084/m9.figshare.7916441.v1
title: Supplementary Material for: Silencing MicroRNA-155 Attenuates Kainic Acid-Induced Seizure by Inhibiting Microglia Activation

description: <b><i>Objective(s):</i></b> Neuroinflammation is an important contributor to the development of seizures and epilepsy. Micro-RNA-155 (miR-155) plays a critical role in immunity and ­inflammation. This study aims to explore the function of miR-155 and miR-155-mediated inflammation in epilepsy. <b><i>Methods:</i></b> About 8-week-old male C57BL/6 mice were administered an intraperitoneal injection (i.p.) of kainic acid (KA) (15 mg/kg) or saline. The mice in the KA group developing acute seizure were further subjected to intracerebroventricular injection (i.c.v.) of antagomir negative control (NC) or miR-155 antagomir. Animal behavior was observed according to Racine’s scale, and electroencephalographs were recorded. Primary microglia were cultured and treated with antagomir NC or antagomir. Whole-cell electrophysiological recording was conducted to detect the spontaneous EPSCs and IPSCs in the neurons treated with different conditioned medium from those microglia. miR-155 were detected by qRT-PCR in those models, as well as in the brain or blood from epileptic patients and healthy controls. <b><i>Results:</i></b> miR-155 was abundantly expressed in glial cells compared with neurons, and its expression was markedly elevated in the brain of epilepsy patients and KA-induced seizure mice. Silencing miR-155 attenuated KA-induced seizure, abnormal electroencephalography, proinflammatory cytokine expression, and microglia morphology change. Moreover, conditioned media from KA-treated microglia impaired neuron excitability, whereas conditioned media from KA and miR-155 antagomir co-treated microglia had no such effects. Finally, miR-155 levels were significantly higher in the blood of epilepsy patients than those of healthy controls. <b><i>Conclusion(s):</i></b> These findings demonstrate that aberrant upregulation of miR-155 contributes to epileptogenesis through inducing microglia neuroinflammation.
DOI: 10.6084/m9.figshare.21357147.v1
title: 50 images used in experiment

description: Fifty images were selected from an online database representing ten types of architectural spaces: offices, residential spaces, educational spaces, indoor sports areas, retail stores, industrial spaces, restaurants, healthcare facilities, museums, and houses of worship. Forty naïve participants (17 male and 23 females, an average age of 27) took part in this study conducted in the Penn State University Lighting Lab. The visual preference ranged from “Extremely unpleasant” to “Extremely pleasant” in a 9-point scale. For the next three questions (visual complexity, visual clarity, and colorfulness), ranges of “Extremely simple” to “Extremely complex”, “Extremely unclear” to “Extremely clear”, and “Not colorful” to “Extremely colorful” were provided for each judgment. A separate “I do not know / I do not care” option was included to reduce bias and enhance the reliability of the scales.
DOI: 10.6084/m9.figshare.23781471.v2
title: Metadata

description: Main metadata of a systematic review study on disability, education and social networks.
DOI: 10.6084/m9.figshare.26669350.v1
title: Supplementary data 1

description: Trajectory data as required
DOI: 10.17632/34tj8gnhh8
title: TEMP_ICU

description: Two ICUs temperature data. The set provides the temperature history from T-720 min to T+240 min every 30 min together with Heart rate, Systolic and Diastolic Blood Pressure (T-380 min to T=0), and the hour of the day.
Timone_ train.csv is from Hôpital de la Timone ICU (used for training 1237 patients)
Timone_validate.csv is is from Hôpital de la Timone ICU (used for hyperparameter optimization 825 patients)
Nord.csv is from Hôpital Nord ICU (used for validation 3084 patients)

each files :
Temp(t-xmin) Temperature x min before
Temp(t+ymin) Temperature y min before
Temp(t) Temerature at instant t
hour(t) hour in the day at the instant t 
ARTs(t-xmin) Systolic Blood Pressure x min before
ARTd(t-xmin) Diastolic Blood Pressure x min before
DOI: 10.6084/m9.figshare.24999218.v2
title: MS2MO_MultiVocal

description: Multivocal literature review for "From Microservice to Monolith", Ruoyu Su
DOI: 10.17632/c3m4tdyvfm
title: Wearable Light Data Logger

description: This project offers the necessary hardware and software files for creating a wearable light data logger. This equipment is capable of logging measurements of light intensity, color temperature, UV index, as well as red, green, blue, and clear components of light. Measurements are sampled approximately once per minute and stored onto a microSD card. Battery life with a 350 mAh LiPoly battery is approximately 29 hours.
DOI: 10.6084/m9.figshare.2057937.v1
title: Yahoo Password Frequency Corpus

description: This dataset includes sanitized password frequency lists collected from Yahoo inMay 2011. <br>For details of the original collection experiment, please see:<br>Bonneau, Joseph. "The science of guessing: analyzing an anonymized corpus of 70 million passwords." IEEE Symposium on Security & Privacy, 2012.http://www.jbonneau.com/doc/B12-IEEESP-analyzing_70M_anonymized_passwords.pdf<br>This data has been modified to preserve differential privacy. For details ofthis modification, please see:<br>Jeremiah Blocki, Anupam Datta and Joseph Bonneau. "Differentially Private Password Frequency Lists." Network & Distributed Systems Symposium (NDSS), 2016.http://www.jbonneau.com/doc/BDB16-NDSS-pw_list_differential_privacy.pdf<br>Each of the 51 .txt files represents one subset of all users' passwords observedduring the experiment period. "yahoo-all.txt" includes all users; every otherfile represents a strict subset of that group.<br>Each file is a series of lines of the format:<br>FREQUENCY #OBSERVATIONS...<br>with FREQUENCY in descending order. For example, the file:<br>3 12 11 3<br>would represent a the frequency list (3, 2, 1, 1, 1), that is, one passwordobserved 3 times, one observed twice, and three separate passwords observedonce each.
DOI: 10.6084/m9.figshare.28000409.v1
title: Zhaox

description: Invasive alien plants introduced outside their native ranges by human activities are spreading at unprecedented rates globally, posing significant threats to biodiversity, ecosystem functions and services. Nevertheless, plants invasion driven changes in ‘biodiversity–ecosystem function’ are scantily described in relation to ecosystem multifunctionality, especially in the face of climate change. To this end, climate factors, particularly Mean annual temperature (MAT), are often considered to influence both ecosystem functions and the impacts of plant invasions. However, there exists paucity of empirical evidences on how invasive plants and their interactions with climatic/abiotic variables like temperature affect ecosystem multifunctionality. In this study, we assessed the effects of invasive <i>Xanthium</i> species (<i>Xanthium spinosum </i>L. and <i>Xanthium italicum</i> Moretti) on ecosystem multifunctionality across temperature gradients in northwest China. Further, similar warming effects were assessed on congener indigenous species (<i>Xanthium sibiricum</i> Patr.) for pragmatic comparison.
DOI: 10.60893/figshare.pof.27912933.v1
title: Supplement Number 1

description: Properties of setting medium and model error analysis data
DOI: 10.6084/m9.figshare.12899375.v3
title: Data set: Graded recruitment of pupil-linked neuromodulation by parametric stimulation of the vagus nerve

description: <b>exploration.tar.gz</b><br>VNS-locked pupil, eyelid and walking data from the "parameter exploration experiment"<br><b>baseline.tar.gz</b><br>VNS-locked pupil and eyelid data from the "baseline pupil dependence experiment"<br><b>imaging.tar.gz</b><br>VNS-locked fluorescence, pupil, eyelid and walking data from the "imaging experiment"<br><b>DLC_version4_resnet_101</b><br>pre-trained deeplabcut network for pupil size extraction from raw videos.
DOI: 10.6084/m9.figshare.24459616.v1
title: Experimental data for semi-batch culture of <i>Staurastrum sp</i>., <i>Staurastromyces oculus</i>, <i>Cryptomonas sp</i>., and<i> Daphnia magna</i>

description: This is a dataset of population dynamics of<i> Cryptomonas sp.</i> and <i>Staurastrum sp.</i> in a competition system, a competition + parasitism system (with <i>Staurastromyces oculus</i>, parasitic chytrids on <i>Staurastrum</i>), a competition + predation system (with <i>Daphnia magna</i>, a predator of <i>Cryptomonas</i>), and a competition + parasitism + predation system (with both <i>Staurastromyces oculus</i> and <i>Daphnia magna</i>). We will publish related papers using the dataset.
DOI: 10.6084/m9.figshare.23259191.v1
title: Ig_UHPLC_MS_submission raw data

description: Antibody glycosylation plays a crucial role in the humoral immune response by regulating effector functions and influencing binding affinity to immune cell receptors. While antibody glycosylation has been studied extensively for its potential to predict disease status, previous studies have focused mainly on the immunoglobulin G (IgG) isotype due to analytical challenges associated with other isotypes. Thus, developing a sensitive and accurate analytical platform is necessary to characterize antibody glycosylation across multiple isotypes. Our platform targets 98 glycopeptides across IgG, IgA, and IgM isotypes, as well as eight surrogate peptides representing total IgG, four IgG classes, two IgA classes, and IgM. The developed method is sensitive and accurate for Ig glycosylation profiling. It can be adopted for clinical investigations, particularly for detailed humoral immune profiling.
DOI: 10.6084/m9.figshare.24738813.v1
title: <b>The genomic assembly and annotation results of </b><b><i>Skeletonema tropicum</i></b>

description: The first chromosome-level genome assembly of the high temperature preferring <i>Skeletonema</i> species <i>S. tropicum.</i>
DOI: 10.17632/dty7yt2j5k
title: Insect Biorefinery: Bioremediation and Frass Fertilizer for Sustainable Indigenous Vegetable Production

description: The data was collected from laboratory and greenhouse experiments conducted at the Animal Rearing and Quarantine Unit (ARQU) of the International Centre of Insect Physiology and Ecology (icipe), Kenya (S 01˚ 13’ 14.6’’; E 036˚ 53’ 44.5’’, 1,612 m above sea level). The lab experiments were used to determine P. ephipiatta frass fertilizer quality. Greenhouse experiment was established to assess the impact of P. ephipiatta frass fertilizer on vegetable production, in comparison with a commercial fertilizer. The data was collected between April and December 2029.
DOI: 10.6084/m9.figshare.26384995.v1
title: Supplementary Material for: Detecting Longitudinal Trends Between Passively-Collected Phone Use and Anxiety among College Students

description: Introduction: Existing theories and empirical works link phone use with anxiety; however, most leverage subjective self-reports of phone use (e.g., validated questionnaires) that may not correspond well with true behavior. Moreover, most works linking phone use with anxiety do not interrogate associations within a temporal framework. Accordingly, the present study sought to investigate the utility of passively-sensed phone use as a longitudinal predictor of anxiety symptomatology within a population particularly vulnerable to experiencing anxiety. Methods: Using data from the GLOBEM study, which continuously collected longitudinal behavioral data from a college cohort of N=330 students, weekly PHQ-4 anxiety subscale scores across three years (2019-2021) were paired with median daily phone use records from the two weeks prior to anxiety self-report completion. Phone use was operationalized through unlock duration which was passively curated via Apple’s “Screen Time” feature. GPS-tracked location data was further utilized to specify whether an individual’s phone use was at home or away from home. Within-individual and temporal associations between phone use and anxiety were modeled within an ordinal mixed effects logistic regression framework. Results: While there was no significant association between anxiety levels and either median total phone use or median phone use at home, participants in the top quartile of median phone use away from home were predicted to exhibit clinically significant anxiety levels 20% more frequently than participants in the bottom quartile during the first study year; however, this association weakened across successive years. Importantly, these associations remained after controlling for age, physical activity, sleep, and baseline anxiety levels and were not recapitulated when operationalizing phone use with unlock frequency. Conclusions: These findings suggest that phone use may be leveraged as a means of mitigating or coping with anxiety in social situations outside the home, while pandemic-related developments may also have attenuated this behavior later in the study. Nevertheless, the present results suggest promise in interrogating a larger suite of objectively-measured phone use behaviors within the context of social anxiety.