cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12825527.v1
title: Additional file 1 of The current landscape of coronavirus-host protein–protein interactions

description: Additional file 1. Table S1: Complete list of coronavirus-host interaction data retrieved from literature. Table S2: Consolidated, non-redundant list of coronavirus-host protein-protein interactions. Table S3: Number of interactions identified for each coronavirus. Table S4: List of interactions reported multiple times accross different coronaviruses (i.e. orthologous interactions). Table S5: Matrix of host proteins interacting with multiple coronaviruses. Table S6: Host proteins present in enriched KEGG pathways from Table 1c. Table S7: Consolidated, non-redundant list of host proteins present in Table S1 with or without interactors of S (left and right columns, respectively).
DOI: 10.6084/m9.figshare.12825450
title: Additional file 8 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 8: Table S4. Raw enrichment tests on the core, BAT93-specific or JaloEEP558-specific transcriptomes.
DOI: 10.6084/m9.figshare.12825453
title: Additional file 9 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 9: Table S5. Enrichment tests on the core, BAT93-specific or JaloEEP558-specific transcriptomes, using induced or repressed DEGs separately.
DOI: 10.6084/m9.figshare.12825447
title: Additional file 7 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 7: Table S3. List of DEGs in BAT93 and JaloEEP558 48 h after inoculation by X. phaseoli pv. phaseoli strain CFBP6546R.
DOI: 10.6084/m9.figshare.12825453.v1
title: Additional file 9 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 9: Table S5. Enrichment tests on the core, BAT93-specific or JaloEEP558-specific transcriptomes, using induced or repressed DEGs separately.
DOI: 10.6084/m9.figshare.12825444
title: Additional file 6 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 6: Table S2. List of homologs shared by BAT93 and JaloEEP558.
DOI: 10.6084/m9.figshare.12825450.v1
title: Additional file 8 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 8: Table S4. Raw enrichment tests on the core, BAT93-specific or JaloEEP558-specific transcriptomes.
DOI: 10.6084/m9.figshare.12825441
title: Additional file 5 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 5: Table S1. Number of genes shared among common bean genomes, as determined by reciprocal blastp (e-value &lt;1E-6).
DOI: 10.6084/m9.figshare.12825447.v1
title: Additional file 7 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 7: Table S3. List of DEGs in BAT93 and JaloEEP558 48 h after inoculation by X. phaseoli pv. phaseoli strain CFBP6546R.
DOI: 10.6084/m9.figshare.12825444.v1
title: Additional file 6 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 6: Table S2. List of homologs shared by BAT93 and JaloEEP558.
DOI: 10.6084/m9.figshare.12825441.v1
title: Additional file 5 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 5: Table S1. Number of genes shared among common bean genomes, as determined by reciprocal blastp (e-value &lt;1E-6).
DOI: 10.6084/m9.figshare.12825423
title: Additional file 17 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 17: Table S13. Primers used for RT-qPCR assays.
DOI: 10.6084/m9.figshare.12825420
title: Additional file 16 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 16: Table S12. Results of the enrichment tests according to the core, BAT93-specific or JaloEEP558-specific transcriptome and according to different log2FC threshold.
DOI: 10.6084/m9.figshare.12825423.v1
title: Additional file 17 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 17: Table S13. Primers used for RT-qPCR assays.
DOI: 10.6084/m9.figshare.12825417
title: Additional file 15 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 15: Table S11. Genetic markers associated to the four QRLs to CBB described by Nodari et al. 1993 [the four QRLs to CBB described in the progeny of BAT93xJaloEEP558 (Nodari et al., 1993) [50].
DOI: 10.6084/m9.figshare.12825408.v1
title: Additional file 12 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 12: Table S8. List of DEGs with |Δlog2FC| &gt; 5.
DOI: 10.6084/m9.figshare.12825420.v1
title: Additional file 16 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 16: Table S12. Results of the enrichment tests according to the core, BAT93-specific or JaloEEP558-specific transcriptome and according to different log2FC threshold.
DOI: 10.6084/m9.figshare.12825414.v1
title: Additional file 14 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 14: Table S10. List of DEGs in the four QRLs to CBB described in the progeny of BAT93xJaloEEP558 (Nodari et al., 1993) [50].
DOI: 10.6084/m9.figshare.12825396
title: Additional file 7 of P2RX7 inhibitor suppresses exosome secretion and disease phenotype in P301S tau transgenic mice

description: Additional file 7: Supplementary Table 1. GSK1482160 did not change the total Tau expression in P301S mouse brain hippocampus, but slightly reduced the hyperphosphorylation level of Tau. Supplementary Table 2. GSK1482160 did not change the total Tau expression and hyperphosphorylation level in P301S mouse cerebral cortex.
DOI: 10.6084/m9.figshare.12825402.v1
title: Additional file 10 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

description: Additional file 10: Table S6. List of enriched MapMan bins in the BAT93-specific and JaloEEP558-specific transcriptomes.
DOI: 10.6084/m9.figshare.12825396.v1
title: Additional file 7 of P2RX7 inhibitor suppresses exosome secretion and disease phenotype in P301S tau transgenic mice

description: Additional file 7: Supplementary Table 1. GSK1482160 did not change the total Tau expression in P301S mouse brain hippocampus, but slightly reduced the hyperphosphorylation level of Tau. Supplementary Table 2. GSK1482160 did not change the total Tau expression and hyperphosphorylation level in P301S mouse cerebral cortex.
DOI: 10.6084/m9.figshare.12825371
title: Additional file 2 of A sparse Bayesian factor model for the construction of gene co-expression networks from single-cell RNA sequencing count data

description: Additional file 2 Excel file containing lists of gene names and significant GO terms from the real data analyses.
DOI: 10.6084/m9.figshare.12825371.v1
title: Additional file 2 of A sparse Bayesian factor model for the construction of gene co-expression networks from single-cell RNA sequencing count data

description: Additional file 2 Excel file containing lists of gene names and significant GO terms from the real data analyses.
DOI: 10.6084/m9.figshare.12825303
title: Additional file 1 of Urinary neutrophil gelatinase-associated lipocalin values alone and combined with Prognostic Index predict septic AKI, DIC, and shock: a pilot study

description: Additional file 1: Table S1. Predictive Factors for Septic AKI, ARDS, Shock, and DIC (Multivariate Analysis).
DOI: 10.6084/m9.figshare.12825303.v1
title: Additional file 1 of Urinary neutrophil gelatinase-associated lipocalin values alone and combined with Prognostic Index predict septic AKI, DIC, and shock: a pilot study

description: Additional file 1: Table S1. Predictive Factors for Septic AKI, ARDS, Shock, and DIC (Multivariate Analysis).
DOI: 10.6084/m9.figshare.12825225
title: Additional file 1 of Rapid size change associated with intra-island evolutionary radiation in extinct Caribbean “island-shrews”

description: Additional file 1: Figure S1. (a) Distribution of read lengths in paired-reads dataset. (b) Level of coverage across reference mitochondrial genome in mapped-reads dataset. Figure S2. Maximum likelihood phylogeny generated using RAxML, including Nesophontes paramicrus, N. zamicrus, and extant eulipotyphlans with available whole mitochondrial genome data. Node values represent bootstrap support (100 replicates). Table S1. Morphometric measurements taken on Hispaniolan Nesophontes mandibles. Table S2. Measurement and PCA data for Hispaniolan Nesophontes mandibles. Table S3. Genes used in phylogenetic analysis, including GenBank accession numbers. Asterisk indicates chimeric taxon made up of multiple species. Table S4. Evolutionary models chosen for each gene in the alignment using PartitionFinder. Table S5. Fossil constraints and priors used in divergence date analysis. Table S6. Eulipotyphlan species used in pairwise genetic distance analysis. Table S7. Pairwise distances for eulipotyphlan sister species pairs in the mitochondrial cyt b gene, showing number of base differences per site between sequences. Table S8. Pairwise distances for eulipotyphlan sister species pairs in the mitochondrial 12S gene, showing number of base differences per site between sequences. Table S9. Pairwise distances for eulipotyphlan sister species pairs in the CREM (cAMP responsive element modulator) protein-coding nuclear gene, showing number of base differences per site between sequences. Table S10. Pairwise distances for eulipotyphlan sister species pairs in the BRCA1 (Breast Cancer 1) protein-coding nuclear gene, showing number of base differences per site between sequences. Table S11. Pairwise distances for eulipotyphlan sister species pairs in the RAG1 (recombination activating gene 1) protein-coding nuclear gene, showing number of base differences per site between sequences. Table S12. Pairwise distances for eulipotyphlan sister species pairs in the BDNF (brain derived neurotrophic factor) protein-coding nuclear gene, showing number of base differences per site between sequences.
DOI: 10.6084/m9.figshare.12825225.v1
title: Additional file 1 of Rapid size change associated with intra-island evolutionary radiation in extinct Caribbean “island-shrews”

description: Additional file 1: Figure S1. (a) Distribution of read lengths in paired-reads dataset. (b) Level of coverage across reference mitochondrial genome in mapped-reads dataset. Figure S2. Maximum likelihood phylogeny generated using RAxML, including Nesophontes paramicrus, N. zamicrus, and extant eulipotyphlans with available whole mitochondrial genome data. Node values represent bootstrap support (100 replicates). Table S1. Morphometric measurements taken on Hispaniolan Nesophontes mandibles. Table S2. Measurement and PCA data for Hispaniolan Nesophontes mandibles. Table S3. Genes used in phylogenetic analysis, including GenBank accession numbers. Asterisk indicates chimeric taxon made up of multiple species. Table S4. Evolutionary models chosen for each gene in the alignment using PartitionFinder. Table S5. Fossil constraints and priors used in divergence date analysis. Table S6. Eulipotyphlan species used in pairwise genetic distance analysis. Table S7. Pairwise distances for eulipotyphlan sister species pairs in the mitochondrial cyt b gene, showing number of base differences per site between sequences. Table S8. Pairwise distances for eulipotyphlan sister species pairs in the mitochondrial 12S gene, showing number of base differences per site between sequences. Table S9. Pairwise distances for eulipotyphlan sister species pairs in the CREM (cAMP responsive element modulator) protein-coding nuclear gene, showing number of base differences per site between sequences. Table S10. Pairwise distances for eulipotyphlan sister species pairs in the BRCA1 (Breast Cancer 1) protein-coding nuclear gene, showing number of base differences per site between sequences. Table S11. Pairwise distances for eulipotyphlan sister species pairs in the RAG1 (recombination activating gene 1) protein-coding nuclear gene, showing number of base differences per site between sequences. Table S12. Pairwise distances for eulipotyphlan sister species pairs in the BDNF (brain derived neurotrophic factor) protein-coding nuclear gene, showing number of base differences per site between sequences.
DOI: 10.5281/zenodo.3692342
title: Dataset for a paper

description: This repository contains all figures’ coordinates data in a paper about geological porous media.
DOI: 10.5281/zenodo.3692341
title: Dataset for a paper

description: This repository contains all figures’ coordinates data in a paper about geological porous media.
DOI: 10.18112/openneuro.ds002900.v1.0.3
title: Spinal Cord MRI Public Database (Single-subject)
DOI: 10.18112/openneuro.ds002900.v1.0.4
title: Spinal Cord MRI Public Database (Single-subject)
DOI: 10.5281/zenodo.3910813
title: Shipsnet Dataset

description: Shipsnet Dataset
DOI: 10.5281/zenodo.3910812
title: Shipsnet Dataset

description: Shipsnet Dataset
DOI: 10.7295/w9cil52553
title: CIL:52553, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52551
title: CIL:52551, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52552
title: CIL:52552, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52554
title: CIL:52554, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52555
title: CIL:52555, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52556
title: CIL:52556, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52557
title: CIL:52557, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52558
title: CIL:52558, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52559
title: CIL:52559, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52560
title: CIL:52560, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52561
title: CIL:52561, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52562
title: CIL:52562, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52563
title: CIL:52563, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52564
title: CIL:52564, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52565
title: CIL:52565, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52566
title: CIL:52566, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52567
title: CIL:52567, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52568
title: CIL:52568, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52569
title: CIL:52569, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52570
title: CIL:52570, Homo sapiens, High-grade serious overian cancer
DOI: 10.7295/w9cil52571
title: CIL:52571, Homo sapiens, High-grade serious overian cancer
DOI: 10.5281/zenodo.3910932
title: Microfluidics system for the entrapment and detection of oocysts of Cryptosporidium

description: <em>Cryptosporidium</em> is an obligate intracellular protozoan parasite of great public health concern. Oocysts, the infectious form of <em>Cryptosporidium</em> species are ubiquitous in environmental sources such as soil and water all over the world and can stay viable up to six months. Several outbreaks of Cryptosporidiosis, a diarrheal illness in healthy and immunocompromised humans and in agriculturally important livestock species have been reported over the years owing to contaminated drinking water and recreational water supplies. Also, it has been a source of contaminants in salad vegetables and other raw leafy fruits and vegetables. A method for rapid monitoring of oocysts of <em>Cryptosporidium</em> species in water treatment plants and outside eateries will help to protect the public from incidences of Cryptosporidiosis. In the present study, Microfluidics device has been developed to entrap and detect the oocysts from environmental samples. The prepared device entraps and detects the oocysts at Micron level. The entire device is established on small chip sized area (2 cm x 2cm) utilizing less volume of samples and reagents. The device is cost effective and rapid in its action. Oocysts are detected by using FITC-labeled antibodies. The sensitivity of detection method is 35 %. Efficiency of trapping of positive oocysts is 0.078 % and oocysts from sample is 0.47% .
DOI: 10.5281/zenodo.3910931
title: Microfluidics system for the entrapment and detection of oocysts of Cryptosporidium

description: <em>Cryptosporidium</em> is an obligate intracellular protozoan parasite of great public health concern. Oocysts, the infectious form of <em>Cryptosporidium</em> species are ubiquitous in environmental sources such as soil and water all over the world and can stay viable up to six months. Several outbreaks of Cryptosporidiosis, a diarrheal illness in healthy and immunocompromised humans and in agriculturally important livestock species have been reported over the years owing to contaminated drinking water and recreational water supplies. Also, it has been a source of contaminants in salad vegetables and other raw leafy fruits and vegetables. A method for rapid monitoring of oocysts of <em>Cryptosporidium</em> species in water treatment plants and outside eateries will help to protect the public from incidences of Cryptosporidiosis. In the present study, Microfluidics device has been developed to entrap and detect the oocysts from environmental samples. The prepared device entraps and detects the oocysts at Micron level. The entire device is established on small chip sized area (2 cm x 2cm) utilizing less volume of samples and reagents. The device is cost effective and rapid in its action. Oocysts are detected by using FITC-labeled antibodies. The sensitivity of detection method is 35 %. Efficiency of trapping of positive oocysts is 0.078 % and oocysts from sample is 0.47% .
DOI: 10.5281/zenodo.3910924
title: Tanuma and Tozuka (2020) Model outputs

description: Model outputs used in the manuscript entitled "Influences of the Interdecadal Pacific Oscillation on the locally amplified Ningaloo Niño" by Natsumi Tanuma and Tomoki Tozuka that was submitted to Geophysical Research Letters.
DOI: 10.5281/zenodo.3910923
title: Tanuma and Tozuka (2020) Model outputs

description: Model outputs used in the manuscript entitled "Influences of the Interdecadal Pacific Oscillation on the locally amplified Ningaloo Niño" by Natsumi Tanuma and Tomoki Tozuka that was submitted to Geophysical Research Letters.
DOI: 10.5519/qd.2zr458s4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2 records)
DOI: 10.5519/qd.92pz9zc6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5 records)
DOI: 10.5519/qd.cjxlmizy
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4571013 records)
DOI: 10.5519/qd.ihohk8yr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (174 records)
DOI: 10.25919/5ef7006a7aca2
title: Data for phylogeny of Gnaphalieae

description: Two supermatrices and phylogenetic trees for the manuscript Smissen et al., A revised subtribal classification of Gnaphalieae (Asteraceae), to be published in TAXON.
DOI: 10.5281/zenodo.3911015
title: Fragmentation cross-sections for cosmic ray nuclei in the interstellar medium

description: Table of the cumulative (included ghost nuclei) and direct fragmentation cross sections <strong>on H target</strong> generated with the XS4GCR code. More than 3800 channels are included from Ni64 to H1. Tables are saved as txt files with ' ' as delimiter. For each row the first 4 integers represent: fragment Z, fragment A, projectile Z and projectile A The following 160 values are the cross sections (in mbarn) as a function of the projectile kinetic energy per nucleon The first row is identified with 0 0 0 0 as the first 4 values and contains the values of the kinetic energy per nucleon (log spaced between 10 MeV/n and 1 TeV/n) at which the cross sections are computed.
description: {"references": ["Evoli, Carmelo. et al., (2018), JCAP 07, 006, arXiv:1711.09616", "Evoli, Carmelo et al. (2019), Physical Review D, Volume 99, Issue 10, id.103023, arXiv:1904.10220"]}
DOI: 10.5281/zenodo.3529612
title: Fragmentation cross-sections for cosmic ray nuclei in the interstellar medium

description: Table of the cumulative (included ghost nuclei) and direct fragmentation cross sections <strong>on H target</strong> generated with the XS4GCR code. More than 3800 channels are included from Ni64 to H1. Tables are saved as txt files with ' ' as delimiter. For each row the first 4 integers represent: fragment Z, fragment A, projectile Z and projectile A The following 160 values are the cross sections (in mbarn) as a function of the projectile kinetic energy per nucleon The first row is identified with 0 0 0 0 as the first 4 values and contains the values of the kinetic energy per nucleon (log spaced between 10 MeV/n and 1 TeV/n) at which the cross sections are computed.
description: {"references": ["Evoli, Carmelo. et al., (2018), JCAP 07, 006, arXiv:1711.09616", "Evoli, Carmelo et al. (2019), Physical Review D, Volume 99, Issue 10, id.103023, arXiv:1904.10220"]}
DOI: 10.5281/zenodo.3909552
title: MicroCT Data of Mice for Osteoarthritis Biomarkers Project

description: MicroCT data of mice for Quantitative Image-Based Osteoarthritis Bio-markers project. This dataset contains original data (ORIG- in filename of zipped folders containing DICOM files), manual segmentations (MAN- in filename), and automatic segmentations (AUTO- in filename) used for benchmarking of automated 3D bone characterization tools created by Kitware, Inc. Original data from: Lau AG (2014) Joint bleeding in factor VIII deficient mice causes an acute loss of trabecular bone and calcification of joint soft tissues which is prevented with aggressive factor replacement. <em>Haemophilia</em> 20(5):716-722. PMCID: PMC4396845. Changes in version 1.0.1: Includes individual files for manual and automatic segmentations and corresponding original data in zipped folders. Version 1.0.0 contained a single zipped file with the entire dataset (MicroCT data mice osteoarthritis biomarkers.zip). See https://doi.org/10.5281/zenodo.3890144.
description: Funding provided by National Institutes of Health (1R44AR074375).
description: {"references": ["Lau AG, Sun J, Hannah WB, Livingston EW, Heymann D, Bateman TA, Monahan PE (2014) Joint bleeding in factor VIII deficient mice causes an acute loss of trabecular bone and calcification of joint soft tissues which is prevented with aggressive factor replacement. Haemophilia 20(5):716-722. PMCID: PMC4396845."]}