cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30179419
title: Co-infection dynamics: Major Histocompatibility Complex modulation of Batrachochytrium dendrobatidis and Ranavirus infections in amphibians

description: Genetic variation in immune genes is an important component of genetic diversity. The genes in the Major Histocompatibility Complex (MHC) provide an excellent model system for studying the mechanisms that generate and maintain genetic diversity in natural populations. While both demographic factors and pathogen-mediated selection processes contribute to the extreme diversity observed in the MHC systems, determining the relative importance of these evolutionary mechanisms has remained challenging. We investigated the role of pathogen-mediated selection in driving MHC diversity in three amphibian species: <i>Ichthyosaura alpestris</i>, <i>Pleurodeles waltl</i> and <i>Pelophilax perezi</i>. Our study examined the relationships between individual MHC diversity, infection status, infection intensity, and co-infection with two major amphibian pathogens: <i>Batrachochytrium dendrobatidis</i> (<i>Bd</i>) and <i>Ranavirus</i> sp. (<i>Rv</i>) in natural populations. Our research demonstrated significant differences in <i>Bd</i> and <i>Rv</i> infection intensities among individuals with varying numbers of MHC loci. However, co-infection showed no discernible influence on infection intensities. We observed stronger associations of specific MHC alleles and supertypes with infection intensity and status in <i>I. alpestris</i>. These findings suggest that, in the context of multi-host infections, MHC genes may provide valuable insights into the evolutionary forces shaping MHC diversity, although the specific effects of individual MHC alleles on disease dynamics are yet to be clarified.Keywords: amphibian, co-infections dynamics, Chytrid fungus, viruses, infection status
DOI: 10.6084/m9.figshare.30179419.v1
title: Co-infection dynamics: Major Histocompatibility Complex modulation of Batrachochytrium dendrobatidis and Ranavirus infections in amphibians

description: Genetic variation in immune genes is an important component of genetic diversity. The genes in the Major Histocompatibility Complex (MHC) provide an excellent model system for studying the mechanisms that generate and maintain genetic diversity in natural populations. While both demographic factors and pathogen-mediated selection processes contribute to the extreme diversity observed in the MHC systems, determining the relative importance of these evolutionary mechanisms has remained challenging. We investigated the role of pathogen-mediated selection in driving MHC diversity in three amphibian species: <i>Ichthyosaura alpestris</i>, <i>Pleurodeles waltl</i> and <i>Pelophilax perezi</i>. Our study examined the relationships between individual MHC diversity, infection status, infection intensity, and co-infection with two major amphibian pathogens: <i>Batrachochytrium dendrobatidis</i> (<i>Bd</i>) and <i>Ranavirus</i> sp. (<i>Rv</i>) in natural populations. Our research demonstrated significant differences in <i>Bd</i> and <i>Rv</i> infection intensities among individuals with varying numbers of MHC loci. However, co-infection showed no discernible influence on infection intensities. We observed stronger associations of specific MHC alleles and supertypes with infection intensity and status in <i>I. alpestris</i>. These findings suggest that, in the context of multi-host infections, MHC genes may provide valuable insights into the evolutionary forces shaping MHC diversity, although the specific effects of individual MHC alleles on disease dynamics are yet to be clarified.Keywords: amphibian, co-infections dynamics, Chytrid fungus, viruses, infection status
DOI: 10.6084/m9.figshare.30179413
title: A sample embedding set - Astral40R & IDP

description: This dataset contains a sample of embeddings generated for two seq. sets: a random sequence set (<b>Astral40R</b>) and intrinsically disordered proteins (<b>IDP</b>, derived from DisProt v2024_12). The embeddings serve as example input for evaluating the <b>Random Neighbor Score (RNS)</b>, a model- and task-agnostic measure of embedding uncertainty.The pickled file contains numpy array of embeddings along with labels.<b>Associated Preprint</b>: https://www.biorxiv.org/content/10.1101/2025.04.30.651
DOI: 10.6084/m9.figshare.30179413.v1
title: A sample embedding set - Astral40R & IDP

description: This dataset contains a sample of embeddings generated for two seq. sets: a random sequence set (<b>Astral40R</b>) and intrinsically disordered proteins (<b>IDP</b>, derived from DisProt v2024_12). The embeddings serve as example input for evaluating the <b>Random Neighbor Score (RNS)</b>, a model- and task-agnostic measure of embedding uncertainty.The pickled file contains numpy array of embeddings along with labels.<b>Associated Preprint</b>: https://www.biorxiv.org/content/10.1101/2025.04.30.651
DOI: 10.15468/dl.3ucz2u
title: Occurrence Download

description: A dataset containing 1563 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cotoneaster microphyllus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1563 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005874-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4eqe4t
title: Occurrence Download

description: A dataset containing 319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cinnamomum zeylanicum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 319 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005873-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ayykc
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eleocharis obtusa",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 166 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005876-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcqrtr
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eleocharis obtusa",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 64 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005878-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hm8svt
title: Occurrence Download

description: A dataset containing 120233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Galanthus nivalis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 120233 records from 512 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005849-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwsayg
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eleocharis obtusa",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005877-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npn9ak
title: Occurrence Download

description: A dataset containing 1429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Citharexylum caudatum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1429 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005879-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ct8hym
title: Occurrence Download

description: A dataset containing 3705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cotoneaster pannosus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3705 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005880-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/26875
title: Chandra X-ray Observatory ObsId 26875

description: X-ray confirmation of optically selected IMBH-powered AGN and high-resolution imaging of their host galaxies
DOI: 10.15468/dl.3f8mhk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elliptio jayensis, BOLD:AAN6370)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America)",
 "Geometry MULTIPOLYGON (((-111.8525 38.92009, -109.6185 38.92009, -109.6185 40.72137, -111.8525 40.72137, -111.8525 38.92009)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005881-250920141307145/datasets/export for details.
DOI: 10.15468/dl.e3c6hz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fimbristylis dichotoma",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005882-250920141307145/datasets/export for details.
DOI: 10.25574/27843
title: Chandra X-ray Observatory ObsId 27843

description: Chandra Observation of the Late-Time Interacting Type Ib SN 2004dk
DOI: 10.25574/27849
title: Chandra X-ray Observatory ObsId 27849

description: GALAXY CLUSTERS AT Z~1 FROM THE MASSIVE AND DISTANT CLUSTERS OF WISE SURVEY
DOI: 10.15468/dl.m3ckc6
title: Occurrence Download

description: A dataset containing 1656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fimbristylis dichotoma",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1656 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005883-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g7gyf6
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fimbristylis dichotoma",
 "Country is Burundi",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005884-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5286/isis.e.rb2420027-2
title: Short range order in Al2TiO5 and its higher order unconventional phases

description: The Al-Ti-O system finds uses in industry as a coating, mainly Al2TiO5. However, Al2TiO5 decomposes into its constituent oxides in the intermediate temperature range, before reforming at high temperatures. Here, we propose a combined average structure and total scattering study on Al2TiO5 and two higher order phases, Al6Ti2O13 and Al16Ti5O34, to probe anti-site metal short range order and the influence of oxygen vacancies on phase stability and formation. Further, a variable T in situ study aims to reveal directly the influence of oxygen vacancy mobility on crystallisation in Al2TiO5.
DOI: 10.15468/dl.8fj5nq
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Schnella outimouta"
 ]
}

 The dataset includes 121 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005885-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ppk8a
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Citharexylum gentryi",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 49 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005887-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17177920
title: Open Data for Automatic Pill Dispenser to Improve Medication Adherence in Elderly and Chronic Disease Patients
DOI: 10.5281/zenodo.17177921
title: Open Data for Automatic Pill Dispenser to Improve Medication Adherence in Elderly and Chronic Disease Patients
DOI: 10.15468/dl.yreu38
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fimbristylis dichotoma",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005890-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u592dt
title: Occurrence Download

description: A dataset containing 253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fimbristylis dichotoma",
 "Country is Cameroon",
 "HasCoordinate is true"
 ]
}

 The dataset includes 253 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005888-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdug5d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fimbristylis dichotoma",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005889-250920141307145/datasets/export for details.
DOI: 10.15468/dl.9gseqv
title: Occurrence Download

description: A dataset containing 13489855 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Charadrius melodus, Charadrius vociferus, Actitis macularius, Pelecanus erythrorhynchos, Phalacrocorax auritus, Hydroprogne caspia, Sterna hirundo, Sterna forsteri, Chlidonias niger, Larus smithsonianus, Larus delawarensis, Gavia immer, Aythya marila, Aythya affinis, Nycticorax nycticorax, Anas platyrhynchos, Branta canadensis, Spatula discors, Aix sponsa, Ardea alba, Botaurus, Botaurus lentiginosus, Ardea herodias, Rallus limicola, Porzana carolina, Gallinula galeata, Antigone canadensis, Progne subis, Tachycineta bicolor, Petrochelidon pyrrhonota, Hirundo rustica, Haliaeetus leucocephalus, Meleagris gallopavo, Calidris minutilla, Phalaropus tricolor, Tringa melanoleuca, Tringa flavipes, Calidris pusilla, Calidris alba, Calidris alpina, Recurvirostra americana, Egretta thula, Agelaius phoeniceus, Xanthocephalus xanthocephalus, Falco columbarius, Falco peregrinus, Quiscalus quiscula, Bubo virginianus)",
 "GadmGid is one of (USA.23_1, USA.50_1)",
 "Year is greater than or equal to 2000",
 "OccurrenceStatus is Present",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 13489855 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005843-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3fpyj6
title: Occurrence Download

description: A dataset containing 1591495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation)",
 "Geometry POLYGON((12.95198 52.30752,13.96552 52.30752,13.96552 52.83195,12.95198 52.83195,12.95198 52.30752))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1949-2025"
 ]
}

 The dataset includes 1591495 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005831-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mr3h22
title: Occurrence Download

description: A dataset containing 11083014 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantaginaceae",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11083014 records from 7221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005822-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8g2hac
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quassia amara L.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205398-220831081235567/datasets/export for details.
DOI: 10.15468/dl.z6mxd2
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catasetum luridum (Link) Lindl."
 ]
}

 The dataset includes 147 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0261246-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8u5wce
title: Occurrence Download

description: A dataset containing 526 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.12854 4.54931,-74.1449 4.55381,-74.16442 4.55895,-74.17273 4.5448,-74.17383 4.52817,-74.17021 4.51583,-74.14728 4.51049,-74.12801 4.50918,-74.12057 4.52873,-74.12016 4.54386,-74.12854 4.54931))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 526 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177939-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csuky8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex baccans Nees",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200770-220831081235567/datasets/export for details.
DOI: 10.15468/dl.gp6w2b
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catasetum macrocarpum Rich. ex Kunth"
 ]
}

 The dataset includes 360 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0261251-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prump4
title: Occurrence Download

description: A dataset containing 1005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-33.14784 -2.8644,45.84934 -2.8644,45.84934 60.33601,-33.14784 60.33601,-33.14784 -2.8644))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Serranus atricauda Günther, 1874",
 "Year 1000-2022"
 ]
}

 The dataset includes 1005 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282698-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93q2kx
title: Occurrence Download

description: A dataset containing 14071 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Mexico)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Falco femoralis Temminck, 1822",
 "Year 1930-2019"
 ]
}

 The dataset includes 14071 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205386-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfrz5e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cerasus ×sacra (Miyoshi) H.Ohba",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205388-220831081235567/datasets/export for details.
DOI: 10.15468/dl.f7wqmm
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-83.26952 24.83191,-84.26886 24.19493,-81.57982 24.31704,-79.70236 24.83191,-79.70236 26.62831,-80.20452 27.36077,-81.03574 30.82842,-83.99428 29.96282,-83.26952 26.62831,-83.26952 24.83191))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is September",
 "TaxonKey is Rhizophora mangle L.",
 "Year 2003-2023"
 ]
}

 The dataset includes 237 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282699-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzq67d
title: Occurrence Download

description: A dataset containing 332 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Peru",
 "TaxonKey is Brachyotum (DC.) Triana",
 "Year 2002-2022"
 ]
}

 The dataset includes 332 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230501-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.