cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8321424
title: Dual Simulated SEND and EDX dataset

description: A simulated SEND + EDX dataset along with the code used to produce it. code SEND_ground_Truth_Segment_Model-AB.ipynb (ipynb which outlines the code for end to end data production, however some of the actual SEND data production is done through the gen_data.py and add_noise.py files due to system memory requirements making a cluster job more convenient) gen_data.py (python file for creating an intermediate simulated SEND dataset) add_noise.py (python file that takes the intermediate SEND dataset and samples it to produce pseudo-experimental data) phase_maps Contains pairs of jpg/npy files that show/quantify the proportional of each phase at each pixel location as constructed in the atomic model data SEND.hspy (the simulated SEND dataset as per the atomic model) EDS.hspy (the simulated EDS dataset) atomic_model.xyz (ASE atomic model for the simulated data) labelled_voxels.npy (the phase labels for the 3d array of volumetric-pixels used to produce the atomic model)
DOI: 10.15468/dl.w9767h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nipponochyromera gracilipes Kojima & Morimoto, 1996",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222709-220831081235567/datasets/export for details.
DOI: 10.5281/zenodo.11061945
title: Dual Simulated SEND and EDX dataset

description: A simulated SEND + EDX dataset along with the code used to produce it.



code



SEND_ground_Truth_Segment_Model-AB.ipynb (ipynb which outlines the code for end to end data production, however some of the actual SEND data production is done through the gen_data.py and add_noise.py files due to system memory requirements making a cluster job more convenient)

gen_data.py (python file for creating an intermediate simulated SEND dataset)

add_noise.py (python file that takes the intermediate SEND dataset and samples it to produce pseudo-experimental data)



phase_maps



Contains pairs of jpg/npy files that show/quantify the proportional of each phase at each pixel location as constructed in the atomic model



data



SEND.hspy (the simulated SEND dataset as per the atomic model)

EDS.hspy (the simulated EDS dataset)

EDS-varied-dose.zip (EDS simulations at different electron doses)

atomic_model.xyz (ASE atomic model for the simulated data)

labelled_voxels.npy (the phase labels for the 3d array of volumetric-pixels used to produce the atomic model)




Added in newer version: the VAE processing of the SEND data has been included



data



RadialData



data_radial.hspy (A radial transformation of the simulated SEND dataset used for VAE testing)

data_radial_training_data.hspy (The data_radial.hspy dataset but with pattern populations reweighted to better represent high variance regions)

navigation_axis_variance.npy (The mean variance within the 2D diffraction signal at each pixel probe position) 

signal_axis_variance.npy (The variance of each signal pixel in the 2D diffraction pattern, averaged for each pixel probe position) 

RadialModel



best_model.hdf5 (The trained weights for the VAE)



PCA_comps_mse



N (The number of PCA components used to estimate the centroids of the clustering)



latspacedata.npy (The coordinates of the simulated SEND data in the 2d latent space)

mapdata.npy (The assigned cluster label to each of the patterns in the simulated SEND data)

Regions



i.jpg (the region and radial pattern of each of the clusters







ML_clusters_mse



encode_data.npy (The coordinates of the simulated SEND data in the 2d latent space)

enc_mask.npy (The encoded data transformed into a density based fixed image)

ml_cluster_map.npy (The ML predictions of the centroid locations)

ML_clusters



N (This folder is then the same as the PCA equivalent)
DOI: 10.5281/zenodo.10176736
title: Dual Simulated SEND and EDX dataset

description: A simulated SEND + EDX dataset along with the code used to produce it.

code

SEND_ground_Truth_Segment_Model-AB.ipynb (ipynb which outlines the code for end to end data production, however some of the actual SEND data production is done through the gen_data.py and add_noise.py files due to system memory requirements making a cluster job more convenient)
gen_data.py (python file for creating an intermediate simulated SEND dataset)
add_noise.py (python file that takes the intermediate SEND dataset and samples it to produce pseudo-experimental data)
phase_maps

Contains pairs of jpg/npy files that show/quantify the proportional of each phase at each pixel location as constructed in the atomic model
data

SEND.hspy (the simulated SEND dataset as per the atomic model)
EDS.hspy (the simulated EDS dataset)
EDS-varied-dose.zip (EDS simulations at different electron doses)
atomic_model.xyz (ASE atomic model for the simulated data)
labelled_voxels.npy (the phase labels for the 3d array of volumetric-pixels used to produce the atomic model)
DOI: 10.15468/dl.mr59hx
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-1.3301783346367082 44.375960520541945,-0.7708039926295371 44.375960520541945,-0.7708039926295371 44.93533486254912,-1.3301783346367082 44.93533486254912,-1.3301783346367082 44.375960520541945))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oncorhynchus mykiss (Walbaum, 1792)"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172654-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11059004
title: Dual Simulated SEND and EDX dataset

description: A simulated SEND + EDX dataset along with the code used to produce it.



code



SEND_ground_Truth_Segment_Model-AB.ipynb (ipynb which outlines the code for end to end data production, however some of the actual SEND data production is done through the gen_data.py and add_noise.py files due to system memory requirements making a cluster job more convenient)

gen_data.py (python file for creating an intermediate simulated SEND dataset)

add_noise.py (python file that takes the intermediate SEND dataset and samples it to produce pseudo-experimental data)



phase_maps



Contains pairs of jpg/npy files that show/quantify the proportional of each phase at each pixel location as constructed in the atomic model



data



SEND.hspy (the simulated SEND dataset as per the atomic model)

EDS.hspy (the simulated EDS dataset)

EDS-varied-dose.zip (EDS simulations at different electron doses)

atomic_model.xyz (ASE atomic model for the simulated data)

labelled_voxels.npy (the phase labels for the 3d array of volumetric-pixels used to produce the atomic model)




Added in newer version: the VAE processing of the SEND data has been included



data



RadialData



data_radial.hspy (A radial transformation of the simulated SEND dataset used for VAE testing)

data_radial_training_data.hspy (The data_radial.hspy dataset but with pattern populations reweighted to better represent high variance regions)

navigation_axis_variance.npy (The mean variance within the 2D diffraction signal at each pixel probe position) 

signal_axis_variance.npy (The variance of each signal pixel in the 2D diffraction pattern, averaged for each pixel probe position) 

RadialModel



best_model.hdf5 (The trained weights for the VAE)



PCA_comps_mse



N (The number of PCA components used to estimate the centroids of the clustering)



latspacedata.npy (The coordinates of the simulated SEND data in the 2d latent space)

mapdata.npy (The assigned cluster label to each of the patterns in the simulated SEND data)

Regions



i.jpg (the region and radial pattern of each of the clusters







ML_clusters_mse



encode_data.npy (The coordinates of the simulated SEND data in the 2d latent space)

enc_mask.npy (The encoded data transformed into a density based fixed image)

ml_cluster_map.npy (The ML predictions of the centroid locations)

ML_clusters



N (This folder is then the same as the PCA equivalent)
DOI: 10.5281/zenodo.8321423
title: Dual Simulated SEND and EDX dataset

description: A simulated SEND + EDX dataset along with the code used to produce it.



code



SEND_ground_Truth_Segment_Model-AB.ipynb (ipynb which outlines the code for end to end data production, however some of the actual SEND data production is done through the gen_data.py and add_noise.py files due to system memory requirements making a cluster job more convenient)

gen_data.py (python file for creating an intermediate simulated SEND dataset)

add_noise.py (python file that takes the intermediate SEND dataset and samples it to produce pseudo-experimental data)



phase_maps



Contains pairs of jpg/npy files that show/quantify the proportional of each phase at each pixel location as constructed in the atomic model



data



SEND.hspy (the simulated SEND dataset as per the atomic model)

EDS.hspy (the simulated EDS dataset)

EDS-varied-dose.zip (EDS simulations at different electron doses)

atomic_model.xyz (ASE atomic model for the simulated data)

labelled_voxels.npy (the phase labels for the 3d array of volumetric-pixels used to produce the atomic model)




Added in newer version: the VAE processing of the SEND data has been included



data



RadialData



data_radial.hspy (A radial transformation of the simulated SEND dataset used for VAE testing)

data_radial_training_data.hspy (The data_radial.hspy dataset but with pattern populations reweighted to better represent high variance regions)

navigation_axis_variance.npy (The mean variance within the 2D diffraction signal at each pixel probe position) 

signal_axis_variance.npy (The variance of each signal pixel in the 2D diffraction pattern, averaged for each pixel probe position) 

RadialModel



best_model.hdf5 (The trained weights for the VAE)



PCA_comps_mse



N (The number of PCA components used to estimate the centroids of the clustering)



latspacedata.npy (The coordinates of the simulated SEND data in the 2d latent space)

mapdata.npy (The assigned cluster label to each of the patterns in the simulated SEND data)

Regions



i.jpg (the region and radial pattern of each of the clusters







ML_clusters_mse



encode_data.npy (The coordinates of the simulated SEND data in the 2d latent space)

enc_mask.npy (The encoded data transformed into a density based fixed image)

ml_cluster_map.npy (The ML predictions of the centroid locations)

ML_clusters



N (This folder is then the same as the PCA equivalent)
DOI: 10.15468/dl.bsx2nf
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliotropium geissei F.Phil. ex Phil."
 ]
}

 The dataset includes 14 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240089-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f943f7
title: Occurrence Download

description: A dataset containing 4716 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-97.65 40.65,-89.137 40.65,-89.137 42.9,-97.65 42.9,-97.65 40.65))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rodentia",
 "Year 1799-2022"
 ]
}

 The dataset includes 4716 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172656-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hz54be
title: Occurrence Download

description: A dataset containing 6625 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia dentata Michx."
 ]
}

 The dataset includes 6625 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287161-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3faf3r
title: Occurrence Download

description: A dataset containing 3803 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boana raniceps (Cope, 1862)"
 ]
}

 The dataset includes 3803 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198095-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11059121
title: FRACTESUS_UoB_73W_KJc_MCT_-30_T2

description: Fractesus project. Fracture test mini-CT. Raw data 73W. UoB.
DOI: 10.5281/zenodo.11059122
title: FRACTESUS_UoB_73W_KJc_MCT_-30_T2

description: Fractesus project. Fracture test mini-CT. Raw data 73W. UoB.
DOI: 10.15468/dl.k9jkf9
title: Occurrence Download

description: A dataset containing 1998 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (NSW BioNet Atlas, New South Wales Bird Atlassers, Eremaea, BirdLife Australia, Birdata, iNaturalist Research-grade Observations)",
 "TaxonKey is Pedionomus torquatus Gould, 1840"
 ]
}

 The dataset includes 1998 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253324-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jeh9dp
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xanthogramma sapporensis Matsumura, 1916",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 93 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198075-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4xxgd
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eupsophus altor Nuñez, Rabanal & Formas, 2012"
 ]
}

 The dataset includes 42 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253328-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttdp8j
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jacobaea argunensis (Turcz.) B.Nord."
 ]
}

 The dataset includes 75 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234143-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnxets
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.30_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Psittacula krameri (Scopoli, 1769)",
 "Year 2000-2020"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005081-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wu9jt6
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sasaella sawadae (Makino) Koidz.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198124-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cduna2
title: Occurrence Download

description: A dataset containing 39806 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alligator mississippiensis (Daudin, 1801)"
 ]
}

 The dataset includes 39806 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287169-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fpxbw3
title: Occurrence Download

description: A dataset containing 60950 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos L.f., Cabomba caroliniana A.Gray, Cherax destructor Clark, 1936, Crassula helmsii (Kirk) Cockayne, Egeria densa Planch., Erythranthe guttata (DC.) G.L.Nesom, Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Faxonius virilis (Hagen, 1870), Heracleum mantegazzianum Sommier & Levier, Heracleum persicum Desf. ex Fisch., C.A.Mey. & Avé-Lall., Heracleum sosnowskyi Manden., Houttuynia cordata Thunb., Hydrocotyle ranunculoides L.fil., Impatiens glandulifera Royle, Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Lagarosiphon major (Ridl.) Moss, Ludwigia grandiflora (Michx.) Greuter & Burdet, Ludwigia peploides (Kunth) P.H.Raven, Lysichiton americanus Hultén & H.St.John, Myriophyllum aquaticum (Vell.) Verdc., Myriophyllum heterophyllum Michx., Petasites japonicus (Siebold & Zucc.) Maxim., Pontederia cordata L., Procambarus acutus (Girard, 1852), Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Saururus cernuus L., Zizania latifolia (Griseb.) Stapf)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 60950 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172668-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2hq4h
title: Occurrence Download

description: A dataset containing 13964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coraciiformes",
 "Year 1000-2022"
 ]
}

 The dataset includes 13964 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204265-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yzp4re
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxicesta geographica (Fabricius, 1787)"
 ]
}

 The dataset includes 238 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240103-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddap9b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ogyris amaryllis Hewitson, 1862",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208588-220831081235567/datasets/export for details.
DOI: 10.15468/dl.f8e4nx
title: Occurrence Download

description: A dataset containing 14237 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Photinia Lindl."
 ]
}

 The dataset includes 14237 records from 356 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287182-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ufx3j
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypnogyra tubula (Sharp, 1889)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208971-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7tg5tu
title: Occurrence Download

description: A dataset containing 833 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Plant species from the sacred and community forests of Mono departement"
 ]
}

 The dataset includes 833 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287185-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mzy4rn
title: Occurrence Download

description: A dataset containing 1320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Geodetic datum assumed WGS84",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (ff90b050-c256-11db-b71b-b8a03c50a862, 9a23b798-ee7e-4593-9348-7016fdca9960, b459e790-0d3c-11d9-8431-b8a03c50a862, 192a9ab0-5565-11d8-b290-b8a03c50a862, 66522820-055c-11d8-b84e-b8a03c50a862)",
 "TaxonKey is Sphyrna lewini (Griffith & Smith, 1834)"
 ]
}

 The dataset includes 1320 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172672-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmhh8w
title: Occurrence Download

description: A dataset containing 833 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Indigastrum parviflorum (B.Heyne ex Wight & Arn.) Schrire"
 ]
}

 The dataset includes 833 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253326-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyy2dh
title: Occurrence Download

description: A dataset containing 453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "TaxonKey is Python regius (Shaw, 1802)"
 ]
}

 The dataset includes 453 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172691-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8455k
title: Occurrence Download

description: A dataset containing 392446 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Selasphorus platycercus (Swainson, 1827)",
 "Year 1000-2022"
 ]
}

 The dataset includes 392446 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262310-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.