cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25403/upresearchdata.24803427.v1
title: Geochemistry and geochronology data for thin granitoid sheets in, and geological map of H.U. Sverdrupfjella, Western Dronning Maud Land, Antarctica.

description: Data and geological map of H.U. Sverdrupfjella; including geochemistry, geochronology and sheet orientations of the granitoids studied as used in the PhD thesis of Burger (2023).<br>
The geological map is high resolution and after Elvevold and Ohta (2010). The orientation data was measured as dip and azimuth (i.e. the bearing to the downward dip) using a geological compass in the field. Geochemical data is a combination of XRF and ICP-MS, based on the best reference material results (included) or availability. XRF analysis used fused beads for major elements and pressed pellets for trace elements, ICP-MS used a 4 acid digestion method. Geochronology are U-Pb system data on separated zircon grains analysed by SHRIMP for 5 samples of granitoid. The data file includes mean ages as well as data tables for all 5 samples. Please see Burger (2023) for more detailed methodology.
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DOI: 10.25403/upresearchdata.24803427.v2
title: Geochemistry and geochronology data for thin granitoid sheets in, and geological map of H.U. Sverdrupfjella, Western Dronning Maud Land, Antarctica

description: Data and geological map of H.U. Sverdrupfjella; including geochemistry, geochronology and sheet orientations of the granitoids studied as used in the PhD thesis of Burger (2023).<br>
The geological map is high resolution and after Elvevold and Ohta (2010). The orientation data was measured as dip and azimuth (i.e. the bearing to the downward dip) using a geological compass in the field. Geochemical data is a combination of XRF and ICP-MS, based on the best reference material results (included) or availability. XRF analysis used fused beads for major elements and pressed pellets for trace elements, ICP-MS used a 4 acid digestion method. Geochronology are U-Pb system data on separated zircon grains analysed by SHRIMP for 5 samples of granitoid. The data file includes mean ages as well as data tables for all 5 samples. Please see Burger (2023) for more detailed methodology.
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DOI: 10.6084/m9.figshare.14527658.v1
title: Additional file 2 of Comprehensive analysis of coding and non-coding RNA transcriptomes related to hypoxic adaptation in Tibetan chickens

description: Additional file 2: Table S2. List of software and the parameters used in this study.
DOI: 10.6084/m9.figshare.16625231
title: Additional file 11 of The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

description: Additional file 11: Data S11. FASTA file of Pgt sRNAs predicted to be up-regulated in 3 dpi and/or 5 dpi.
DOI: 10.6084/m9.figshare.14527652.v1
title: Additional file 10 of Comprehensive analysis of coding and non-coding RNA transcriptomes related to hypoxic adaptation in Tibetan chickens

description: Additional file 10: Table S9. Important difference in circRNA-miRNA-mRNA interactions based on the competing endogenous RNA (ceRNA) network.
DOI: 10.6084/m9.figshare.16625228
title: Additional file 10 of The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

description: Additional file 10: Data S10. FASTA file of Pgt sRNAs predicted to be up-regulated in germinated spores.
DOI: 10.6084/m9.figshare.14527667.v1
title: Additional file 5 of Comprehensive analysis of coding and non-coding RNA transcriptomes related to hypoxic adaptation in Tibetan chickens

description: Additional file 5: Table S4. The 3194 known lncRNAs, 471 known miRNAs, and 968 novel miRNAs.
DOI: 10.6084/m9.figshare.14527673.v1
title: Additional file 7 of Comprehensive analysis of coding and non-coding RNA transcriptomes related to hypoxic adaptation in Tibetan chickens

description: Additional file 7: Table S6. GO and KEGG pathway enrichment of differentially expressed lncRNA (DE lncRNA) target genes.
DOI: 10.6084/m9.figshare.14527716
title: Additional file 4 of The landscape of chromatin accessibility in skeletal muscle during embryonic development in pigs

description: Additional file 4: Table S3. GO and KEGG pathway analyses of stage-specific ACRs among different stages. LW45_GO_terms, LW70_GO_terms and LW100_GO_terms: results from the GO analyses of stage-specific ACRs at the LW45, LW70 and LW100 stages, respectively; LW45_pathways, LW70_pathways and LW100_pathways: results from the KEGG pathway analyses of stage-specific ACRs at the LW45, LW70 and LW100 stages; common_GO_terms: results from the GO analyses of common genes with stage-specific ACRs overlapped among the three stages. common_pathways: results from the KEGG pathway analyses of common genes with stage-specific ACRs overlapped among the three stages.
DOI: 10.6084/m9.figshare.14527716.v1
title: Additional file 4 of The landscape of chromatin accessibility in skeletal muscle during embryonic development in pigs

description: Additional file 4: Table S3. GO and KEGG pathway analyses of stage-specific ACRs among different stages. LW45_GO_terms, LW70_GO_terms and LW100_GO_terms: results from the GO analyses of stage-specific ACRs at the LW45, LW70 and LW100 stages, respectively; LW45_pathways, LW70_pathways and LW100_pathways: results from the KEGG pathway analyses of stage-specific ACRs at the LW45, LW70 and LW100 stages; common_GO_terms: results from the GO analyses of common genes with stage-specific ACRs overlapped among the three stages. common_pathways: results from the KEGG pathway analyses of common genes with stage-specific ACRs overlapped among the three stages.
DOI: 10.6084/m9.figshare.19778136
title: Additional file 3 of Equations for predicting DXA-measured visceral adipose tissue mass based on BMI or weight in adults

description: Additional file 3.
DOI: 10.6084/m9.figshare.19778139.v1
title: Additional file 4 of Equations for predicting DXA-measured visceral adipose tissue mass based on BMI or weight in adults

description: Additional file 4.
DOI: 10.6084/m9.figshare.19778130
title: Additional file 1 of Equations for predicting DXA-measured visceral adipose tissue mass based on BMI or weight in adults

description: Additional file 1.
DOI: 10.6084/m9.figshare.16625186.v1
title: Additional file 5 of Mapping the evolving landscape of super-enhancers during cell differentiation

description: Additional file 5: Table S4. Summary of the evolving signals of enhancers during differentiation for each interrogated system.
DOI: 10.6084/m9.figshare.11913969
title: Applications of the Fractional-Random-Weight Bootstrap

description: For several decades, the resampling based bootstrap has been widely used for computing confidence intervals (CIs) for applications where no exact method is available. However, there are many applications where the resampling bootstrap method cannot be used. These include situations where the data are heavily censored due to the success response being a rare event, situations where there is insufficient mixing of successes and failures across the explanatory variable(s), and designed experiments where the number of parameters is close to the number of observations. These three situations all have in common that there may be a substantial proportion of the resamples where it is not possible to estimate all of the parameters in the model. This article reviews the fractional-random-weight bootstrap method and demonstrates how it can be used to avoid these problems and construct CIs in a way that is accessible to statistical practitioners. The fractional-random-weight bootstrap method is easy to use and has advantages over the resampling method in many challenging applications.
DOI: 10.6084/m9.figshare.16625228.v1
title: Additional file 10 of The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

description: Additional file 10: Data S10. FASTA file of Pgt sRNAs predicted to be up-regulated in germinated spores.
DOI: 10.6084/m9.figshare.14535329
title: MicroRNA miR-188-5p as a mediator of long non-coding RNA MALAT1 regulates cell proliferation and apoptosis in multiple myeloma

description: Multiple myeloma (MM), a malignancy of plasma cells mainly derived from the bone marrow, has remained incurable generally. LncRNA MALAT1 has been reported to be upregulated in the MM cells and knockdown of MALAT1 inhibited MM cell cycle progression and enhanced cell apoptosis. Online target prediction showed that two target sites for MALAT1 existed in miR-188-5p, which has been identified as a tumor suppressor in other types of cancers. However, the role of miR-188-5p in the MM and whether miR-188-5p mediates the MM tumor progression regulated by MALAT1 are still unknown. Herein, four main MM cell lines were adopted to investigate the effects of miR-188-5p on cell proliferation and apoptosis via transfection with miR-188-5p mimic/inhibitor and co-transfection with miR-188-5p inhibitor and MALAT1-shRNA plasmids. Xenograft tumor model was also established to study these effects in vivo. Overexpression of miR-188-5p inhibited cell viability, cell proliferation as well as tumor growth and arrested cell cycle at G1 to S transition, but miR-188-5p knockdown showed opposite effects on the MM cells in vitro and in vivo. Moreover, MALAT1 was shown to be inversely correlated with miR-188-5p expression through direct binding to miR-188-5p, and in turn, miR-188-5p could mediate the MM cell proliferation and apoptosis regulated by MALAT1. These findings indicate that miR-188-5p serves as a tumor suppressor in the progression of the MM and is directly involved in MM cell proliferation and apoptosis regulated by MALAT1, which may provide a potential therapeutic target or prognostic indictor for MM clinical treatment.
DOI: 10.6084/m9.figshare.16625234.v1
title: Additional file 12 of The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

description: Additional file 12: Data S12. FASTA file of Pgt sRNAs predicted to be up-regulated in 7 dpi.
DOI: 10.6084/m9.figshare.14535329.v1
title: MicroRNA miR-188-5p as a mediator of long non-coding RNA MALAT1 regulates cell proliferation and apoptosis in multiple myeloma

description: Multiple myeloma (MM), a malignancy of plasma cells mainly derived from the bone marrow, has remained incurable generally. LncRNA MALAT1 has been reported to be upregulated in the MM cells and knockdown of MALAT1 inhibited MM cell cycle progression and enhanced cell apoptosis. Online target prediction showed that two target sites for MALAT1 existed in miR-188-5p, which has been identified as a tumor suppressor in other types of cancers. However, the role of miR-188-5p in the MM and whether miR-188-5p mediates the MM tumor progression regulated by MALAT1 are still unknown. Herein, four main MM cell lines were adopted to investigate the effects of miR-188-5p on cell proliferation and apoptosis via transfection with miR-188-5p mimic/inhibitor and co-transfection with miR-188-5p inhibitor and MALAT1-shRNA plasmids. Xenograft tumor model was also established to study these effects in vivo. Overexpression of miR-188-5p inhibited cell viability, cell proliferation as well as tumor growth and arrested cell cycle at G1 to S transition, but miR-188-5p knockdown showed opposite effects on the MM cells in vitro and in vivo. Moreover, MALAT1 was shown to be inversely correlated with miR-188-5p expression through direct binding to miR-188-5p, and in turn, miR-188-5p could mediate the MM cell proliferation and apoptosis regulated by MALAT1. These findings indicate that miR-188-5p serves as a tumor suppressor in the progression of the MM and is directly involved in MM cell proliferation and apoptosis regulated by MALAT1, which may provide a potential therapeutic target or prognostic indictor for MM clinical treatment.
DOI: 10.6084/m9.figshare.19778077
title: Additional file 3 of RNA modification mapping with JACUSA2

description: Additional file 3 Table S2 (XLSX). m6A target site predictions from YTH-APOBEC mapping assay.
DOI: 10.6084/m9.figshare.19778184
title: Additional file 1 of Identification of miRNA biomarkers for stomach adenocarcinoma

description: Additional file 1. Table S1. The differently expressed mRNAs of STAD in TCGA. Table S2. The differently expressed miRNAs of STAD in TCGA. Table S3. The results of univariate COX regression. Table S4. Online databases predicted 50 target genes of these four miRNAs. Table S5. The results of GO analysis and KEGG analysis of ultimate target genes
DOI: 10.6084/m9.figshare.19778184.v1
title: Additional file 1 of Identification of miRNA biomarkers for stomach adenocarcinoma

description: Additional file 1. Table S1. The differently expressed mRNAs of STAD in TCGA. Table S2. The differently expressed miRNAs of STAD in TCGA. Table S3. The results of univariate COX regression. Table S4. Online databases predicted 50 target genes of these four miRNAs. Table S5. The results of GO analysis and KEGG analysis of ultimate target genes
DOI: 10.6084/m9.figshare.19778139
title: Additional file 4 of Equations for predicting DXA-measured visceral adipose tissue mass based on BMI or weight in adults

description: Additional file 4.
DOI: 10.6084/m9.figshare.17156820
title: Additional file 10 of A regulatory miRNA–mRNA network is associated with transplantation response in acute kidney injury

description: Additional file 10: Table S1. Soft-threshold fit indices of two datasets.
DOI: 10.6084/m9.figshare.17156820.v1
title: Additional file 10 of A regulatory miRNA–mRNA network is associated with transplantation response in acute kidney injury

description: Additional file 10: Table S1. Soft-threshold fit indices of two datasets.
DOI: 10.6084/m9.figshare.16625231.v1
title: Additional file 11 of The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

description: Additional file 11: Data S11. FASTA file of Pgt sRNAs predicted to be up-regulated in 3 dpi and/or 5 dpi.
DOI: 10.15468/dl.dvkglc
title: Occurrence Download

description: A dataset containing 1040904 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus L."
 ]
}

 The dataset includes 1040904 records from 1094 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004422-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwmr8b
title: Occurrence Download

description: A dataset containing 1518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Passiflora mixta L.fil."
 ]
}

 The dataset includes 1518 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0363927-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wk4syc
title: Occurrence Download

description: A dataset containing 11920 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyracoidea"
 ]
}

 The dataset includes 11920 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025450-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a8voru
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caulerpa amicorum Harvey, 1860",
 "HasCoordinate is false"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004422-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.htk42v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhabdocline epiphylla (A.K.Parker & J.Reid) J.K.Stone & Gernandt",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0394642-210914110416597/datasets/export for details.
DOI: 10.15468/dl.g37mbd
title: Occurrence Download

description: A dataset containing 36515 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset includes 36515 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031924-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1ia5sg
title: Occurrence Download

description: A dataset containing 673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Dendrolagus Müller, 1840",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 673 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004422-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a4bt97
title: Occurrence Download

description: A dataset containing 1923 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-84.4336294000000009 42.2215295000000026, -84.4336294000000009 42.2239432900000011, -84.4336294000000009 42.2260352500000025, -84.4336294000000009 42.2281272000000030, -84.4336294000000009 42.2313455899999965, -84.4336294000000009 42.2337593800000022, -84.4336294000000009 42.2369777700000029, -84.4336294000000009 42.2389088099999981, -84.4336294000000009 42.2418053600000007, -84.4336294000000009 42.2445409899999973, -84.4336294000000009 42.2471157000000019, -84.4286404500000032 42.2471157000000019, -84.4260655000000071 42.2471157000000019, -84.4225249499999961 42.2471157000000019, -84.4175359999999984 42.2471157000000019, -84.4175359999999984 42.2437363900000022, -84.4175359999999984 42.2401961600000035, -84.4175359999999984 42.2372996100000009, -84.4175359999999984 42.2344030599999982, -84.4175359999999984 42.2302191500000035, -84.4175359999999984 42.2265179999999987, -84.4175359999999984 42.2242651299999991, -84.4175359999999984 42.2215295000000026, -84.4225249499999961 42.2215295000000026, -84.4263873700000005 42.2215295000000026, -84.4308935199999979 42.2215295000000026, -84.4336294000000009 42.2215295000000026))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 1923 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151333-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gp7ab
title: Occurrence Download

description: A dataset containing 2352 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Palicourea rigida Kunth"
 ]
}

 The dataset includes 2352 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039139-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8168346
title: Public Opinion Russia Ukraine War (Updated Daily)
DOI: 10.15468/dl.vrsjty
title: Occurrence Download

description: A dataset containing 512 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinoclemmys areolata (Duméril, Bibron & Duméril, 1851)"
 ]
}

 The dataset includes 512 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004423-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4h9vxx
title: Occurrence Download

description: A dataset containing 26551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polypogon monspeliensis (L.) Desf.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 26551 records from 665 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003390-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6kkvm
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monstera anomala Zuluaga & Croat"
 ]
}

 The dataset includes 43 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182223-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6bsupc
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Brachidontes adamsianus (Dunker, 1857)"
 ]
}

 The dataset includes 158 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133652-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mi7fqv
title: Occurrence Download

description: A dataset containing 14219 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbario BIO de Plantas Vasculares (BIO), Universidad del Pais Vasco (UPV/EHU)"
 ]
}

 The dataset includes 14219 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000164-150304104939900/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ef2vta
title: Occurrence Download

description: A dataset containing 581 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "StateProvince is one of (santander)",
 "TaxonKey is one of (Epidendrum L.)"
 ]
 }
 ]
}

 The dataset includes 581 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000907-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0nlege
title: Occurrence Download

description: A dataset containing 5126 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Terrapene ornata (Agassiz, 1857)"
 ]
}

 The dataset includes 5126 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000164-150311145101897/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.