cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.427p0/1
title: Snail colour frequencies

description: Snail colours divided into colour classes (white, banded, red and others) for two subsamples per skerry and visit. Data covers 4 populations to which only white snails were introduced June 1992, 3 populations to which only banded snails were introduced and one population to which only red snails were introduced.
DOI: 10.5061/dryad.438h3/1
title: Description of the SNP plates

description: Information sheet containing the description of which individuals were included in plates 2-7
DOI: 10.5061/dryad.438h3/2
title: Plate no 2

description: Raw data from SNP plate no 2
DOI: 10.5061/dryad.438h3/3
title: Plate no 3

description: Raw data from SNP plate no 3
DOI: 10.5061/dryad.48636/1
title: Fungal data

description: This datafile consists of the presence-absence data of 326 wood-inhabiting fungal species (identified as fruit-bodies) found in 22 418 dead wood units from managed and natural forest sites. For each dead wood unit, the decay stage (scalar from 1 to 5), diameter (in cm), length (in cm), type (classification according to the diameter) are given. For each forest site, the management type (managed or natural) and name of the forest site are given. We surveyed in each forest site 5-10 randomly located 10 x 10 m sample plots, which are indexed in the "plot" column.
DOI: 10.5061/dryad.7v222/1
title: De novo assembly of Rhabdomys pumilio transcriptome and detailed differential gene expression results

description: This dataset contains a fasta file, including the de novo assembly of Rhabdomys pumilio transcriptome (built from RNA-Seq data using the Trinity suite of de novo transcriptome assembly tools - https://github.com/trinityrnaseq/trinityrnaseq/wiki), as well as a tab separated text file indicating the gene annotations corresponding to each assembly contig, obtained by mapping the de novo assembly to the human reference transcriptome, as described in the manuscript. A third Excel file contains the detailed results of RNA-Seq differential gene expression study in skin obtained from three dorsal regions, as described in the manuscript.
DOI: 10.5061/dryad.869cf/1
title: Chirgwin et al.

description: Key to the data set are as follows. Block = experimental run #, sire= sire ID, dam= dam ID, temp1= temperature treatment (1=17C, 2=21C, 3=25C), rep= replicate of each family in each environment, survival = proportion of larvae that survived in each rep, Season1= period of time data was collected (winter = 1 and summer=2).
DOI: 10.5061/dryad.9ct33/1
title: ECE-2016-07-0071 - Data
DOI: 10.5061/dryad.b0q2g/1
title: Morales.etal.Supp_files_dryad

description: Data and scripts.
DOI: 10.5061/dryad.b0q2g/3
title: SuppMaterial
DOI: 10.5061/dryad.d468t/12
title: Sycoscapter_cytb

description: Sequence data for cytochrome b for Sycoscapter individuals.
DOI: 10.5061/dryad.d468t/13
title: Sycoscapter_ITS2

description: Sequence data for ITS2 for Sycoscapter individuals.
DOI: 10.5061/dryad.d468t/14
title: Watshamiella_cytb

description: Sequence data for cytochrome b for Watshamiella individuals.
DOI: 10.5061/dryad.d468t/15
title: Watshamiella_ITS2

description: Sequence data for ITS2 for Watshamiella individuals.
DOI: 10.5061/dryad.d468t/9
title: Eukobelea_ITS2

description: Sequence data for ITS2 for Eukobelea individuals.
DOI: 10.5061/dryad.g8418/1
title: Fig. 1- Heteranthera gardneri

description: Heteranthera gardneri. A, habit, showing a flowered population during dry-season; B, detail of the stem. C, detail of the flower-like inflorescence, showing how the upper perianth-lobes mimic androecium parts. A–B by A.P. Fontana, C by C.P. Bove.
DOI: 10.5061/dryad.g8418/2
title: Fig. 2- Heteranthera lutea

description: Heteranthera lutea. A, habit, showing an individual with petiolate and sessile leaves; B, habit, showing a submerged individual with only sessile leaves; C, detail of the one-flowered inflorescence, showing the tetramerous flower. Plate modified from the Flore de Madagascar et des Comores, Pontédériacées (1946), vol. 38: pp. 5; acquired through the Biodiversity Heritage Library (BHL).
DOI: 10.5061/dryad.g8418/3
title: Fig. 3- Heteranthera species

description: Related Heteranthera species. A–B, Heteranthera dubia, from the United States: A, habit showing submerged individual with sessile and linear leaves; B, detail of the one-flowered inflorescence. C–D, Heteranthera rotundifolia, from Northeastern Brazil: C, habit, showing; D, detail of the flower; E–F, Heteranthera seubertiana, from Northeastern Brazil: E, detail of the sessile leave rosette; F, detail of the inflorescence, showing the open yellow flowers. G–H, Heteranthera zosterifolia, from Southeastern Brazil: G, habit, showing the emerged stem with sessile linear leaves; H, detail of the flower. A–B by C.N. Horn, C–D by A. Popovkin, E–F by R. Teobaldo, G by G. Oliveira and H by S.S. de Oliveira.
DOI: 10.5061/dryad.gc182/1
title: Description of raw files in data package

description: Provides information on all raw files in the data package, including sample IDs.
DOI: 10.5061/dryad.j723v/1
title: Dataset

description: The file contains the dataset. A brief description of the variables is available in the ReadMe file. The data are explained in more detail in the Methods section of the paper (see Maurel et al., 2016, Global Ecology and Biogeography).
DOI: 10.5061/dryad.m2r17/4
title: biofilm metabolism

description: Dissolved oxygen (mg/cm2) production and consumption at each site and over time. Respiration (header - R), gross primary production (header - GPP), and net ecosystem production (header - NEP) are included.
DOI: 10.5061/dryad.rc1kv/1
title: ensembl-nov2015

description: data for Fig.1: ensembl-nov2015.txt column 1: Ensembl gene family ID column 2: number of genes in the (Ensembl) gene family column 3: description of the (Ensembl) gene family
DOI: 10.5061/dryad.rc1kv/2
title: gf-size-feb2016

description: data for Fig.2: gf-size-feb2016.txt column 1: HGNC gene family ID or name column 2: number of genes in the (HGNC) gene family (possibly including pseudogenes) column 3: number of genes in the (HGNC) gene family (excluding pseudogenes) column 4: description of the (HGNC) gene family
DOI: 10.5061/dryad.rc1kv/3
title: gene-fam-with-TF

description: data for Fig.4: gene-fam-with-TF.txt column 1: HGNC gene family ID or name column 2: number of transcription factors in the (HGNC) gene family column 3: number of genes in the (HGNC) gene family (possibly including pseudogenes) column 4: description of the (HGNC) gene family
DOI: 10.5061/dryad.rc1kv/4
title: gene-fam-with-drug-target

description: data for Fig.5: gene-fam-with-drug-target.txt column 1: HGNC gene family ID or name column 2: number of drug target genes (gene products) in the (HGNC) gene family column 3: number of genes in the (HGNC) gene family (possibly including pseudogenes) column 4: description of the (HGNC) gene family
DOI: 10.5061/dryad.s1g64/1
title: Conlisk_etal_richness

description: Species cover
DOI: 10.5061/dryad.s1g64/2
title: Conlisk_etal_seeds

description: Seed rain data
DOI: 10.5061/dryad.t56cn/1
title: R code for constructing and analyzing matrices with nonbreeders

description: R code to construct and analyze matrices in systems with pre- or post-breeding census, different types of nonbreeders, and with or without negative frequency dependence in breeder survival or fecundity. Analyses include growth rate, stable stage structure, reproductive value, demographic variance, comparison to equivalent Leslie matrix model, sensitivity analysis, effect of only observing breeders, and more.
DOI: 10.5061/dryad.t56cn/2
title: R code for running sensitivity analyses in systems with nonbreeders

description: R code for running sensitivity analyses on systems with different types of nonbreeders, with or without negative frequency dependence in breeder survival or reproduction.
DOI: 10.5061/dryad.td065/1
title: Spinner dolphin time-series behavioural data

description: Time series behavioural data  used to model the temporal partitioning of the daily behavioural activities of spinner dolphins in Hawaii.
DOI: 10.5061/dryad.tk0b8/13
title: Dorsolateral (left) view of tenth prozonite and metatergite of I. tobini n. sp. (Fig. 6A)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/14
title: Dorsal view of anterior region of head and labrum of I. tobini n. sp. (Fig. 6C)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope. (Image combined with 6C_7648x-2 33tilt.tif)
DOI: 10.5061/dryad.tk0b8/15
title: Dorsal view of anterior region of head and labrum of I. tobini n. sp. (Fig. 6C)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope. (Image combined with 6C_7648x 33tilt.tif)
DOI: 10.5061/dryad.tk0b8/16
title: Anterolateral (left) view of head and first leg pair of I. tobini (Fig. 6E)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/17
title: Anterior view of head with gnathochilarium open showing flabellate mandibles of I. tobini n. sp. (Fig. 6F)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/18
title: Anterior view of head with gnathochilarium open showing flabellate mandibles of I. tobini n. sp. (Fig. 7A)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/19
title: Anterolateral (right) view of head of I. tobini n. sp. with gnathochilarium open showing mandibles and pectinate lamella with numerous rows of jagged ventrally projecting serrulae (Fig. 7B)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/20
title: Dorsal view of V-shaped endochilarial frontal body of I. tobini n. sp. with fringed lobes (spatulae) protruding through gnathochilarial stipes (Fig. 7C)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/21
title: Anterolateral (right) view of open mouth and keel-shaped pectinate lamella of the mandible of I. tobini n. sp. nested in V-shaped groove of the endochilarium (Fig. 7D)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.v3s0k/21
title: IncrementNetworkStrategyProduct

description: Network --&gt; Strategy --&gt; Increment network strategy product
DOI: 10.5061/dryad.v3s0k/22
title: NetworkStrategyCreator

description: Network --&gt; Strategy --&gt; Network strategy creator
DOI: 10.5061/dryad.v3s0k/23
title: NetworkStrategyProduct

description: Network --&gt; Strategy --&gt; Network strategy product
DOI: 10.5061/dryad.v3s0k/24
title: NetworkStrategyType

description: Network --&gt; Strategy --&gt; Network strategy type
DOI: 10.5061/dryad.v3s0k/25
title: NoFriendsNetworkStrategyProduct

description: Network --&gt; Strategy --&gt; No friends network strategy product
DOI: 10.5061/dryad.v3s0k/26
title: RandomNetworkStrategyProduct

description: Network --&gt; Strategy --&gt; Random network strategy product
DOI: 10.5061/dryad.v3s0k/27
title: WeightNetworkStrategyProduct

description: Network --&gt; Strategy --&gt; Weight network strategy product
DOI: 10.5061/dryad.v3s0k/28
title: Test

description: test
DOI: 10.5061/dryad.v3s0k/29
title: DecimalFormatter

description: utility
DOI: 10.5061/dryad.vg81t/1
title: Morphologika file of average cranial landmarks procrustes fitted

description: Cranial landmarks from 65 rodent specimens, averaged for each genus and Procrustes fitted, for use in GMM analysis (in Morphologika file format).
DOI: 10.5061/dryad.vg81t/2
title: Incisor data

description: Incisor radius of curvature, incisor second moment of area and cranial length for 20 genera of rodents.
DOI: 10.5061/dryad.vg81t/3
title: Rodent phylogeny

description: Nexus file of phylogeny of rodents, adapted from Fabre et al., 2012.
DOI: 10.5061/dryad.038q1/4
title: Mean spring temperatures

description: Mean temperatures (ºC) for May and June, as recorded by the Hoburg meteorological station. Data for 1980 to 2015.
DOI: 10.5061/dryad.038q1/5
title: Censusing collared and pied flycatchers
DOI: 10.5061/dryad.038q1/6
title: Pedigree

description: A pedigree file for the sample population, listing the mother (dam) and father (sire) of all phenotyped individuals (where known). Individuals are identified by ringnumbers.
DOI: 10.5061/dryad.0bk52/1
title: Tripo42_redclover_denovoassembly.Trinity

description: De novo assembly for genotype "Tripo" generated by Trinity program
DOI: 10.5061/dryad.0bk52/2
title: Tripo55_redclover_denovoassembly.Trinity

description: De novo assembly for genotype "Tripo55" derived from Trinity program
DOI: 10.5061/dryad.0bk52/3
title: Lork77_redclvoer_denovoassembly.Trinity
DOI: 10.5061/dryad.0bk52/4
title: Lork108_redclover_denovovassembly.Trinity

description: De novo assembly for genotype "Lork108" derived from Trinity program
DOI: 10.5061/dryad.0bk52/5
title: Tripo_redclover_GFF3

description: Annotation file (GFF3) for genotype Tripo generated by GFF3 python script (script can be found at the end)
DOI: 10.5061/dryad.177q4/1
title: Butterfly abundance across sites

description: This file lists the butterfly abundance across 22 sites used in this study. Transect data at each site has been lumped together in the attached file and the total butterfly species abundance at each site has been presented. See further instructions in the excel file.
DOI: 10.5061/dryad.1hj46/1
title: Cryptic species dataset

description: Data on the number of cryptic species found per study, along with details on focal taxa and detection method, from 1230 studies on metazoans.
DOI: 10.5061/dryad.1qh4c/12
title: Figure 4E
DOI: 10.5061/dryad.1qh4c/13
title: Figure 4F
DOI: 10.5061/dryad.1qh4c/14
title: PRISM FILES
DOI: 10.5061/dryad.23cn7/1
title: Data supplement-Western Pacific bivalve range limits

description: Latitudinal range limit of marine bivalve species in the Western Pacific living on continental or island shelves (water depths &lt; 200 m)
DOI: 10.5061/dryad.23cn7/2
title: Data supplement-Eastern Pacific bivalve range limits

description: Latitudinal range limit of marine bivalve species in the Eastern Pacific living on continental or island shelves (water depths &lt; 200 m)
DOI: 10.5061/dryad.23cn7/3
title: Data supplement-Western Atlantic bivalve range limits

description: Latitudinal range limit of marine bivalve species in the Western Atlantic living on continental or island shelves (water depths &lt; 200 m)
DOI: 10.5061/dryad.23cn7/4
title: Input objects-Western Atlantic

description: The input file for the R code for range expansion model. It has these objects: 3 objects - species, genera, genusnames - vectors of species names for 928 species, genus names for 390 genera, and genus names for each species, 2 objects - Slongextent, Slatextent - empirical latitudinal and longitudinal ranges in degrees for 928 species,  2 objects - lats, longs  - latitudes and longitudes of 1-degree cells with species records in the Western Atlantic database, 3 objects - shelflats, shelflongs, originationrates - latitudes and longitudes of all 1-degree cells in the Western Atlantic (shelf and island &lt; 200 m), and origination rates for each cell - based on temperature dependence of speciations, using mean sea-surface temperature for each cell
DOI: 10.5061/dryad.23cn7/5
title: Range_expansion_model-Western Atlantic

description: Source code for range expansion model in R language, using input data from the Western Atlantic
DOI: 10.5061/dryad.36rn7/2
title: LCF2_genotype_rna_combined_SD

description: eQTL input file under 10%SW condition.
DOI: 10.5061/dryad.36rn7/3
title: LCF2_genotype_rna_combined_SW

description: eQTL input file under 100%SW-challenge condition.
DOI: 10.5061/dryad.37b53/10
title: Tree community composition of survey plots in the forests of Bulong Nature Reserve

description: The dataset is a subset of plant community composition data in Mengsong. For cross-site predictions, we used only the Mengsong plots (n = 16) located within the forest of Bulong Nature Reserve (~60 km2) and only included trees &gt; 5cm DBH in each plot, to maximum comparability between the two landscapes.The rows are survey plots and columns are tree species. This is an input file for R.
DOI: 10.5061/dryad.37b53/12
title: Raw Short Reads of Insects in Mengsong

description: The data is for insect samples from Malaise traps in Mengsong, Xishuangbanna, Yunnan Province, China. Samples were prepared by using one leg from all specimens equal to or larger than a large fly (~5 mm length) and whole bodies of everything smaller. Following the protocol of Ji et al. (2013), samples were homogenized, and DNA was extracted, quality-checked, PCR-amplified with indexed, degenerate primers for the standard mtCOI barcode region, and gel-purified. The PCR products were A-amplicon-sequenced on a Roche GS FLX at the Kunming Institute of Zoology. The 28 Mengsong samples were sequenced on one whole run (four 1/4 regions, November-December 2010: wet season) and two 1/4 regions (May-June 2011: dry season), producing 519 865 and 253 025 raw reads, respectively.
DOI: 10.5061/dryad.37b53/13
title: Bioinformatic scripts of Yinggeling

description: Command history (command_history_yinggeling.txt) and related files, e.g. map files, reference data, programs written by perl language, etc.
DOI: 10.5061/dryad.37b53/14
title: Bioinformatic scripts of Mengsong

description: Command history (command_history_mengsong.txt) and related files, e.g. map files, reference data, programs written by perl language, etc.
DOI: 10.5061/dryad.37b53/15
title: 454 sequencer datasets of Yinggeling

description: The datasets are output of 454 sequencer, and input of the bioinformatic analyses.
DOI: 10.5061/dryad.37b53/16
title: 454 sequencer datasets of Mengsong

description: The datasets are output of 454 sequencer, and input of the bioinformatic analyses.
DOI: 10.5061/dryad.37b53/17
title: Environmental variables in Yinggeling

description: The data includes environmental variables in Yinggeling.  The row names are IDs of survey plots. Abbreviations for column names are: UTM_E and UTM_N = geographic coordinates of each survey plot, Time = the time when survey plots were established and trees were surveyed (2009 or 2011).
DOI: 10.5061/dryad.37b53/18
title: R scripts

description: The file includes all R scripts used, and is of R Markdown format. You may need to open it in RStudio.
DOI: 10.5061/dryad.37b53/9
title: Tree community composition in Yinggeling

description: Tree community composition of each survey plot in Yinggeling.The rows are survey plots and columns are plant species. This is an input file for R.
DOI: 10.5061/dryad.38s8g/1
title: GalliformData
DOI: 10.5061/dryad.38s8g/2
title: GalliformDataSources
DOI: 10.5061/dryad.438h3/4
title: Plate no 4

description: Raw data from SNP plate no 4
DOI: 10.5061/dryad.438h3/5
title: Plate no 5

description: Raw data from SNP plate no 5
DOI: 10.5061/dryad.438h3/6
title: Plate no 6

description: Raw data from SNP plate no 6
DOI: 10.5061/dryad.438h3/7
title: Plate no 7

description: Raw data from SNP plate no 7
DOI: 10.5061/dryad.c2j90/1
title: Data for Fig 1-4, S4 and S7

description: Raw and processed data used to generate Fig 1-4, S4 and S7. Please see the ReadMe file for additional guidance.
DOI: 10.5061/dryad.dg41r/1
title: Capture data for ecotypes 2 and 5 in South Hills

description: These are the capture data for the individuals of Red Crossbill (Loxia curvirostra) ecotypes 2 and 5, including the mean bill depth (mm) of each individual used in the analyses. The initial capture date is provided, and birds included in the analyses were only birds that were initially captured between 2009 and 2014. Nearly all captures were made at the site described in the paper - at the base of a cabin in the South Hills (Sawtooth National Forest), Idaho.
DOI: 10.5061/dryad.dk34k/1
title: Ficus plastid genome alignment

description: MAFFT alignment of 59 near-complete Ficus plastid genomes and 6 Castilleae plastid genomes as outgroup produced by high throughput sequencing.
DOI: 10.5061/dryad.dk34k/2
title: Bayesian majority-rule consensus tree reconstructed from near-complete plastome sequences for 59 species of Ficus and outgroup.

description: Bayesian majority-rule consensus tree depicted in Figure 1 and described in publication.
DOI: 10.5061/dryad.g0v62/1
title: Final_Data_Deposit

description: This directory contains the raw data and the code necessary to replicate the analyses in Gray et al (2016).
DOI: 10.5061/dryad.g1n25/1
title: Tillage x Fertility Crop Costs and Profits 1970 to 2014

description: These data represent the costs and profit (in 2014 US dollars per acre) associated with each tillage x fertility treatment plot. These data were used for the analysis in the Trlica et al. 2017 manuscript. Data were converted from $/ac to $/hectare for publication, but per hectare data are not included here.
DOI: 10.5061/dryad.g1n25/2
title: Nominal Prices 1970-2014

description: Summary of nominal (not inflated to 2014 US dollars) prices of inputs per unit, commodity values per bushel of corn and soybean, and composited PPITW index (2011=100).
DOI: 10.5061/dryad.gc182/10
title: FASTQ files for WGS samples (subset 8)

description: A gzipped tarball containing a directory holding multiple FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using low pass Whole Genome Sequencing (WGS).
DOI: 10.5061/dryad.gc182/2
title: FASTQ files for MSG samples

description: A gzipped tarball containing a directory holding 91 FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using Multiplexed Shotgun Genotyping (MSG).
DOI: 10.5061/dryad.gc182/3
title: FASTQ files for WGS samples (subset 1)

description: A gzipped tarball containing a directory holding multiple FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using low pass Whole Genome Sequencing (WGS).
DOI: 10.5061/dryad.gc182/4
title: FASTQ files for WGS samples (subset 2)

description: A gzipped tarball containing a directory holding multiple FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using low pass Whole Genome Sequencing (WGS).
DOI: 10.5061/dryad.gc182/5
title: FASTQ files for WGS samples (subset 3)

description: A gzipped tarball containing a directory holding multiple FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using low pass Whole Genome Sequencing (WGS).
DOI: 10.5061/dryad.gc182/6
title: FASTQ files for WGS samples (subset 4)

description: A gzipped tarball containing a directory holding multiple FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using low pass Whole Genome Sequencing (WGS).
DOI: 10.5061/dryad.gc182/7
title: FASTQ files for WGS samples (subset 5)

description: A gzipped tarball containing a directory holding multiple FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using low pass Whole Genome Sequencing (WGS).
DOI: 10.5061/dryad.gc182/8
title: FASTQ files for WGS samples (subset 6)

description: A gzipped tarball containing a directory holding multiple FASTQ files. Each file contains reads from a single genotyped individual, with genotyping carried out using low pass Whole Genome Sequencing (WGS).