cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14774854
title: OSU-UVic hosing run with preindistrial initial conditions (PI Full)

description: This directory contains model code, input, output, and scripts from a hosing (freshwater forcing in the North Atlantic) simulation with the OSU-UVic climate model (version 2.9.10) to investigate the effect of changes in the Atlantic Meridional Overturning Circulation (AMOC) on carbon and carbon-13 components in the ocean as described in Schmittner and Boling (2025) and Schmittner (2025).

Model code is in the code/ subdirectory.Model input data is in the data/ subdirectory and in the control.in and mk.in files.Model output data is in the tavg*nc and tsi*nc files.Ferret scripts used to produce the figures are in the ferret/ subdirectory.

Andreas Schmittner (andreas.schmittner@oregonstate.edu)

References:Schmittner, A. and M. Boling (2025) Impact of Atlantic Meridional Overturning Circulation Collapse on Carbon Components in the Ocean, Global Biogeochemical Cycles, 39, e2025GB008526  doi: 10.1029/2025GB008526.Schmittner, A. (2025) Impact of Atlantic Meridional Overturning Circulation Collapse on Carbon-13 Components in the Ocean, Global Biogeochemical Cycles, 39, e2025GB008527  doi: 10.1029/2025GB008527.
DOI: 10.5281/zenodo.16802160
title: OSU-UVic hosing run with preindistrial initial conditions (PI Full)

description: This directory contains model code, input, output, and scripts from a hosing (freshwater forcing in the North Atlantic) simulation with the OSU-UVic climate model (version 2.9.10) to investigate the effect of changes in the Atlantic Meridional Overturning Circulation (AMOC) on carbon and carbon-13 components in the ocean as described in Schmittner and Boling (2025) and Schmittner (2025).

Model code is in the code/ subdirectory.Model input data is in the data/ subdirectory and in the control.in and mk.in files.Model output data is in the tavg*nc and tsi*nc files.Ferret scripts used to produce the figures are in the ferret/ subdirectory.

Andreas Schmittner (andreas.schmittner@oregonstate.edu)

References:Schmittner, A. and M. Boling (2025) Impact of Atlantic Meridional Overturning Circulation Collapse on Carbon Components in the Ocean, Global Biogeochemical Cycles, 39, e2025GB008526  doi: 10.1029/2025GB008526.Schmittner, A. (2025) Impact of Atlantic Meridional Overturning Circulation Collapse on Carbon-13 Components in the Ocean, Global Biogeochemical Cycles, 39, e2025GB008527  doi: 10.1029/2025GB008527.
DOI: 10.25346/s6/lvrrae/c3basl
title: drone_2000_02.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/lhal0w
title: drone_0004_04.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/lhbfrn
title: drone_2000_04.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/lijnwg
title: drone_4000_02.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/5kvlgz
title: drone_3000_02.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/suujc2
title: drone_0020_00.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/y7syg8
title: drone_2000_00.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/qglkem
title: drone_0020_02.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/dvvqud
title: drone_0002_03.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/ppcyxj
title: drone_0400_02.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/ulzxu8
title: drone_0010_05.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/z3q8g9
title: drone_0040_00.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/nl98ji
title: drone_0200_01.mat

description: File uploaded via API
DOI: 10.15468/dl.ep66qx
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macrosamanea discolor",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 164 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004547-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6/lvrrae/dm0wvm
title: drone_0030_01.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/wav1ww
title: drone_0020_04.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/itkks9
title: drone_0100_04.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/gjqnpr
title: drone_4000_01.mat

description: File uploaded via API
DOI: 10.15468/dl.yz2mwa
title: Occurrence Download

description: A dataset containing 875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphorina pallida",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 875 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004546-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6/lvrrae/mcyvbn
title: drone_0003_04.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/y49eh5
title: drone_0020_03.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/j5dnpt
title: drone_0030_05.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/b5qbm1
title: drone_0001_00.mat

description: File uploaded via API
DOI: 10.5061/dryad.0vt4b8hbz
title: Data and code from: Sub-surface deformation of individual fingerprint ridges during tactile interactions

description: The human fingertip can detect small tactile features with a spatial
 acuity roughly the width of a fingerprint ridge. However, how individual
 ridges deform under contact to support accurate and high-precision tactile
 feedback is currently unknown. The complex mechanical structure of the
 glabrous skin, composed of multiple layers and intricate morphology within
 which mechanoreceptors are embedded, makes this question challenging.
 Here, we used optical coherence tomography to image and track sub-surface
 deformations of hundreds of individual fingerprint ridges across ten
 participants and four individual contact events at high spatial resolution
 in vivo. We calculated strain patterns in both the stratum corneum and
 viable epidermis in response to a variety of passively-applied tactile
 stimuli, including static indentation, stick-to-slip events, sliding of a
 flat surface in different directions, and interaction with small tactile
 features, such as edges and grooves. We found that ridges could stretch,
 compress, and undergo considerable shearing orthogonal to the skin
 surface, but there was limited horizontal shear. Therefore, it appears
 that the primary components of ridge deformation and, potentially, neural
 responses are deformations of the ridge flanks and their relative
 movement, rather than overall bending of the ridges themselves. We
 conclude that the local distribution of mechanoreceptors across the ridges
 might be ideally suited to extract the resulting strain gradients and that
 the fingertip skin may possess a higher mechanical spatial resolution than
 that of a single ridge.
description: # Data and code from: Sub-surface deformation of individual fingerprint
 ridges during tactile interactions Dataset DOI:
 [10.5061/dryad.0vt4b8hbz](https://doi.org/10.5061/dryad.0vt4b8hbz) ##
 Description of the data and file structure This dataset contains raw OCT
 images, tracked features as calculated by the DeepLabCut package, and
 processed features after temporal segmentation. ### Files and variables
 #### File: Corniani_Code.zip **Description:** Contains analysis code to
 calculate ridge deformations from tracked features. #### File:
 Corniani_OCT_Edge_Surface.zip **Description:** Contains raw OCT images,
 tracked features, and processed features for the edge stimulus. #### File:
 Corniani_OCT_Flat_Surface.zip **Description:** Contains raw OCT images,
 tracked features, and processed features for the flat stimulus. #### File:
 Corniani_OCT_Groove_Surface.zip **Description:** Contains raw OCT images,
 tracked features, and processed features for the groove stimulus. ##
 Code/software All code written in Python. Requires pandas, numpy,
 matplotlib, scipy, pickle, opencv, and seaborn packages. ## Human subjects
 data Participants provided written consent to publish the recorded data,
 which are high-resolution images of small sections of their fingertip.
 Individual participants cannot be identified from the data gathered.
DOI: 10.25346/s6/lvrrae/q04s5x
title: drone_0400_00.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/hcktky
title: drone_2000_05.mat

description: File uploaded via API
DOI: 10.25346/s6/lvrrae/qrws7m
title: drone_1000_04.mat

description: File uploaded via API
DOI: 10.15468/dl.ptxahj
title: Occurrence Download

description: A dataset containing 514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dysmicoccus neobrevipes)"
 ]
}

 The dataset includes 514 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004549-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7vbnz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Lista de Libélulas y Caballitos del Diablo (Insecta: Odonata) de Colombia"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004550-260126135527185/datasets/export for details.
DOI: 10.5281/zenodo.17414501
title: Generation and propagation of internal solitary waves in background shear currents: incorporating the free-surface effect
DOI: 10.5281/zenodo.18408374
title: Generation and propagation of internal solitary waves in background shear currents: incorporating the free-surface effect
DOI: 10.15468/dl.drs4u7
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perca fluviatilis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1880",
 "Year is less than or equal to 1884"
 ]
}

 The dataset includes 220 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004551-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18323329
title: Machine learning–based image analysis of Parkinson's disease iPS cell-derived neurons predicts genotype and reveals mitochondria–lysosome abnormalities
DOI: 10.5281/zenodo.18323330
title: Machine learning–based image analysis of Parkinson's disease iPS cell-derived neurons predicts genotype and reveals mitochondria–lysosome abnormalities
DOI: 10.15468/dl.3vjd9b
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.26_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhodiola crenulata"
 ]
}

 The dataset includes 69 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004552-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.70rxwdcc2
title: Genomic insights into kin selection and developmental conflict in co-occurring hairworm parasites

description: Many parasites manipulate the behaviour or appearance of their host to
 improve their own survival or transmission, with manipulation timing
 tightly linked to a parasite’s developmental stage. However, host
 manipulations are complicated by the presence of co-occurring parasites
 within the same host. Conspecific co-occurring parasites of similar
 developmental stages, may interact collaboratively to manipulate a host.
 However, co-occurring parasites of different developmental stages will
 conflict with one another- especially when the manipulation is fatal to
 developmentally immature co-occurring parasites. Kin selection further
 complicates these interactions by predicting that closely related
 co-occurring parasites may not interfere with the other’s manipulation.
 Co-occurring hairworm (Nematomorpha) parasites are common, and the water
 seeking manipulation mature worms induce is likely lethal to co-occurring
 juvenile worms. To understand the role that kin selection may have on
 these interactions we assess kin relationships in a wild hairworm
 population. We sequence the first New Zealand hairworm (Gordius
 paranensis) genome and use reduced representation sequencing to estimate
 relatedness among co-occurring worms. We show that co-occurring hairworm
 relatedness varies from unrelated to highly related and that both mature
 and immature worms inhabit the same host. We discuss how these
 developmental and kinship dynamics may shape host manipulations and
 hairworm survival.
description: # Genomic insights into kin selection and developmental conflict in
 co-occurring hairworm parasites Dataset DOI:
 [10.5061/dryad.70rxwdcc2](https://doi.org/10.5061/dryad.70rxwdcc2) ##
 Description of the data and file structure Genome and gff files for
 the hairworm *Gordius paranensis*. Step used to assemble and annotate the
 genome are available from here: [GitHub -
 eddydowle/Hairworm_genome_and_kinrelationships: Code and scripts for
 hairworm genome and kinship estimate
 works](https://github.com/eddydowle/Hairworm_genome_and_kinrelationships)
 Raw reads are available from NCBI project code: PRJNA1234713. Genome ID
 JBMBTH000000000. ### Files and variables #### File:
 W136_annotation_full_swissprot_interproscan.gff **Description:** gff
 annotation file #### File:
 flye_W136_porechop_racon_medaka_purgeddup_scaff10x_tigmint_arcs_min50_hithairworm_rescues_rail_ragtag_nextpolish_renamed.fasta **Description:** genome fasta file ## Code/software Code available from here: [GitHub - eddydowle/Hairworm_genome_and_kinrelationships: Code and scripts for hairworm genome and kinship estimate works](https://github.com/eddydowle/Hairworm_genome_and_kinrelationships) ## Access information Other publicly accessible locations of the data: * Genome ID JBMBTH000000000 Data was derived from the following sources: * Raw reads are available from NCBI project code: PRJNA1234713.
DOI: 10.15468/dl.6t5akx
title: Occurrence Download

description: A dataset containing 10421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bittium reticulatum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10421 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004554-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n5h4vb
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macrotyloma africanum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 40 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004553-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.gtht76j1g
title: An aberrant stem tetrapod from the early Permian of Brazil

description: Early evolutionary history of tetrapods is typically divided into two
 major phases: an initial diversification of archaic stem tetrapod groups,
 and a sudden replacement by temnospondyl amphibians and amniotes following
 a late Carboniferous dry interval termed the Carboniferous Rainforest
 Collapse (CRC). However, the degree to which this scenario applies to the
 early tetrapods of Gondwana is uncertain. Here we report Tanyka amnicola,
 gen. et sp. nov., an archaic stem tetrapod from the early Permian of
 Brazil characterized by strong torsion of the mandibular ramus and a
 remarkable battery of enlarged denticles on a strongly arched coronoid.
 The new taxon is assigned to the tetrapod stem based on the presence of a
 denticulate adsymphyseal and elevated hook-like glenoid surface without a
 postglenoid area. Phylogenetic analysis shows affinities between this
 species and stem tetrapods more proximal to the tetrapod crown group,
 particularly Eucritta and the Laurussian baphetids. This is the second
 stem tetrapod group known to have survived until the end of the early
 Permian in Gondwana despite local extirpation in Laurussia, implying that
 current hypotheses of Carboniferous tetrapod turnover are oversimplified.
 The unique jaw morphology suggests adaptations to either specialized
 processing of small invertebrates or consumption of some plant material,
 demonstrating that stem tetrapods continued to explore new niche space
 into the Permian of Gondwana.
description: # An aberrant stem tetrapod from the early Permian of Brazil Dataset DOI:
 [10.5061/dryad.gtht76j1g](https://doi.org/10.5061/dryad.gtht76j1g) ##
 Description of the data and file structure Surface scan in OBJ format
 prepared using a Creaform 3D white-light surface scanner. ### Files and
 variables #### File: MAP_PV662_Tanika_jaw.obj **Description:** Surface
 scan of the holotype jaw of *Tanyka amnicola*, MAP PV 662
DOI: 10.15468/dl.kug96j
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perca fluviatilis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1885",
 "Year is less than or equal to 1889"
 ]
}

 The dataset includes 30 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004555-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2v6wwq02v
title: Using a low-cost trackball system to assess repeatability of movement in small animals

description: Individual differences in movement patterns are increasingly recognised as
 important within ecology. In the laboratory, they are, however, often
 quantified through relatively coarse measures. We describe a low-cost
 trackball system that incorporates a 3D-printed holder, a commercially
 available polystyrene ball, and is implemented with open-source software.
 We used this system to record six parameters of walking behaviour (e.g.,
 translational velocity, total rotation) and tested the hypothesis that
 these walking parameters are repeatable across individuals. We tested 30
 ground beetle individuals, Carabus problematicus, each in two trackball
 trials one week apart. Individuals were repeatable and differed
 consistently in several movement parameters (including distance walked,
 translational velocity, and path straightness), but not in others (e.g.,
 total rotation and sinuosity). Trackballs allow quantification of walking
 parameters for a wide range of animals, enabling identification of
 individual differences of specific aspects of walking, both fine-scale and
 long-distance aspects of movement. In doing so, trackballs offer novel
 insights into behavioural ecology, including consistent animal personality
 differences.
description: # Using a low-cost trackball system to assess repeatability of movement in
 small animals We developed an inexpensive, open-source trackball setup to
 measure six walking parameters in *Carabus problematicus*. Across repeated
 trials, individuals showed consistent differences in traits such as
 distance walked, translational velocity, and path straightness. Trackballs
 thus provide a powerful tool for detecting individual variation in
 movement and behaviour. #### Description of the data and file structure
 **Data_Trackball_Carabus_Problematicus.txt**:  * id: identity of
 individual * date: date of trial * trial: trial series (first or second) *
 species: Carabus problematicus * sex: sex of the tested individual (M,
 male; F, female) * temperature: ambient temperature during trial (degree
 C) * total_translation: total distance moved during trackball trial (cm) *
 v_translation_mean: translational velocity during trackball trial (mean;
 cm/s ) * sinuosity: sinuosity (straight-line distance between start and
 end point divided by total distance moved) * straightness: path
 straightness (cm/rad; total distance divided by the total rotation) *
 total_rotation: total rotation during trackball trial (rad) *
 v_rotation_mean: mean rotational velocity during trackball trial (rad/s)
 #### Code/Software * **R_code_Trackball_Carabus_problematicus.R**: This
 code loads and prepares data from a trackball experiment, then analyses
 correlations and repeatability of movement traits using mixed models and
 Spearman tests. It also generates diagnostic plots and figures visualising
 behavioural consistency across repeated trials.
DOI: 10.15468/dl.nqfmv5
title: Occurrence Download

description: A dataset containing 108455 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is one of (Elasmobranchii, Holocephali)"
 ]
}

 The dataset includes 108455 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004530-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.8cz8w9h65
title: Data from: Spatiotemporal risk avoidance varies seasonally, relative to risk intensity, in a reestablishing predator–prey system

description: Predation establishes risk, which can indirectly influence prey behavior
 and ecology. We evaluated the influence of Mexican gray wolves (Canis
 lupus baileyi) on habitat selection and spatiotemporal predator avoidance
 strategies of elk (Cervus canadensis). We fit 866 adult female elk with
 GPS collars across areas of varying wolf densities within the Mexican wolf
 experimental population area of eastern Arizona and western New Mexico
 between 2019−2021. Using step-selection functions, we examined relative
 intensity of elk use in relation to landscape attributes, estimated
 predator/prey diel activity, and measures of risk.
description: # Data from: Spatiotemporal risk avoidance varies seasonally, relative to
 risk intensity, in a reestablishing predator–prey system Dataset DOI:
 [10.5061/dryad.8cz8w9h65](https://doi.org/10.5061/dryad.8cz8w9h65) ##
 Description of the data and file structure Predation establishes risk,
 which can indirectly influence prey behavior and ecology. We evaluated the
 influence of Mexican gray wolves (*Canis lupus baileyi*) on habitat
 selection and spatiotemporal predator avoidance strategies of elk (*Cervus
 canadensis*). We fit 866 adult female elk with GPS collars across areas of
 varying wolf densities within the Mexican wolf experimental population
 area of eastern Arizona and western New Mexico between 2019−2021. Using
 step-selection functions we examined relative intensity of elk use in
 relation to landscape attributes, estimated predator/prey diel activity,
 and measures of risk. Risk metrics included predicted wolf presence,
 habitat openness, and predicted risky places modeled from attributes of
 locations where wolves killed elk. See MWEPA_Elk_SSF.csv
 and Thompson_et_al._Metadata.xml ## Code/software R ## Access information
 Other publicly accessible locations of the data: * None Data was derived
 from the following sources: * See published paper for details
DOI: 10.5281/zenodo.17519974
title: Moderate Electrical Muscle Stimulation During Voluntary Movement Does Not Disrupt the Sense of Agency or Ownership