cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fhps3g
title: Occurrence Download

description: A dataset containing 2389170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Emberiza citrinella Linnaeus, 1758)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2389170 records from 2223 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293945-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrvj82
title: Occurrence Download

description: A dataset containing 2350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Euterpe precatoria Mart."
 ]
}

 The dataset includes 2350 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034803-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brc94u
title: Occurrence Download

description: A dataset listing the 274 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Onagraceae",
 {
 "or" : [
 "Country is Canada",
 "Country is United States of America"
 ]
 },
 {
 "or" : [
 "StateProvince is Ontario",
 "StateProvince is Quebec",
 "StateProvince is New Brunswick",
 "StateProvince is Illinois",
 "StateProvince is Indiana",
 "StateProvince is Tennessee",
 "StateProvince is Vermont",
 "StateProvince is Florida",
 "StateProvince is Alabama",
 "StateProvince is Georgia",
 "StateProvince is Lousiana",
 "StateProvince is Mississippi",
 "StateProvince is South Carolina",
 "StateProvince is Connecticut",
 "StateProvince is Kentucky",
 "StateProvince is Massachusetts",
 "StateProvince is Ohio",
 "StateProvince is Rhode Island",
 "StateProvince is Wisconsin",
 "StateProvince is Michigan",
 "StateProvince is Maine",
 "StateProvince is Minnesota",
 "StateProvince is New Hampshire"
 ]
 },
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 274 records were derived from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034800-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26363923.v1
title: Original data

description: Aerobic respiration is a key driver of the Vibrio cholerae proliferation and infection process. Our previous transcriptome results suggest that degS knockout downregulates some genes involved in NADH and ATP synthesis in the aerobic respiratory pathway. In this study, nontargeted metabolomics results showed that the differential metabolites affected by degS knockout were associated with aerobic respiration. Further results suggested that the key products of aerobic respiration, NADH and ATP, were reduced upon degS deletion and were not dependent on the classical σE pathway. It has been shown that the two-component system response factor ArcA is involved in regulating NADH and ATP levels. By qRT-PCR, we found that DegS negatively regulates the transcription of the arcA gene, which also negatively regulates the expression of isocitrate dehydrogenase (ICDH), a key rate-limiting enzyme of the tricarboxylic acid cycle. Knockout of the arcA gene in theΔdegS strain partially restored NADH and ATP levels; whereas overexpression of ICDH in the ΔdegS strain also partially restored NADH and ATP levels. In the growth experiment, compared to the ΔdegS strain, the growth rates of ΔdegSΔarcA and ΔdegS-overexpressed icdh strains(ΔdegS+icdh) were partially restored during the logarithmic growth period. Intestinal colonization of suckling mice showed a significant reduction in the colonization ability of the ΔdegS strain, a comparable colonization ability of the ΔdegS::degS strain and the WT strain, and a partial recovery of the colonization ability of the ΔdegS+icdh strain. Overall, these findings suggest that the DegS protease regulates the expression of ICDH through ArcA, thereby affecting the NADH and ATP levels of V.cholerae and affecting its growth and intestinal colonization ability.
DOI: 10.6084/m9.figshare.26363923
title: Original data

description: Aerobic respiration is a key driver of the Vibrio cholerae proliferation and infection process. Our previous transcriptome results suggest that degS knockout downregulates some genes involved in NADH and ATP synthesis in the aerobic respiratory pathway. In this study, nontargeted metabolomics results showed that the differential metabolites affected by degS knockout were associated with aerobic respiration. Further results suggested that the key products of aerobic respiration, NADH and ATP, were reduced upon degS deletion and were not dependent on the classical σE pathway. It has been shown that the two-component system response factor ArcA is involved in regulating NADH and ATP levels. By qRT-PCR, we found that DegS negatively regulates the transcription of the arcA gene, which also negatively regulates the expression of isocitrate dehydrogenase (ICDH), a key rate-limiting enzyme of the tricarboxylic acid cycle. Knockout of the arcA gene in theΔdegS strain partially restored NADH and ATP levels; whereas overexpression of ICDH in the ΔdegS strain also partially restored NADH and ATP levels. In the growth experiment, compared to the ΔdegS strain, the growth rates of ΔdegSΔarcA and ΔdegS-overexpressed icdh strains(ΔdegS+icdh) were partially restored during the logarithmic growth period. Intestinal colonization of suckling mice showed a significant reduction in the colonization ability of the ΔdegS strain, a comparable colonization ability of the ΔdegS::degS strain and the WT strain, and a partial recovery of the colonization ability of the ΔdegS+icdh strain. Overall, these findings suggest that the DegS protease regulates the expression of ICDH through ArcA, thereby affecting the NADH and ATP levels of V.cholerae and affecting its growth and intestinal colonization ability.
DOI: 10.15468/dl.gvmb43
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vulpes corsac (Linnaeus, 1768)"
 ]
}

 The dataset includes 107 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002922-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5ww77b4h
title: MassIVE MSV000095428 - Autophagic stress activates two distinct compensatory secretory pathways in neurons
title: Neurons are reliant on autophagy to constitutively degrade damaged proteins and organelles in order to maintain cellular homeostasis. Autophagic dysfunction is associated with neurodegenerative diseases including Parkinson Disease. Mutations in the kinase LRRK2 are one of the most common causes of familial Parkinson disease; neurons expressing pathogenic LRRK2 mutations exhibit impaired autophagosome maturation. Here, we use biochemical, live cell imaging and unbiased proteomic approaches to demonstrate that LRRK2 mutant neurons engage two distinct secretory autophagy pathways as compensatory quality control mechanisms. First, we find that LRRK2 mutant neurons upregulate secretory autophagy, releasing cargos usually degraded by basal autophagy such as synaptic proteins and mitochondria. Second, we find that LRRK2 mutant neurons exhibit increased release of MVB-derived exosomes. We propose that these two secretory pathways act in tandem to dispose of cellular waste and to induce transcellular communication, respectively. We demonstrate that both pathways are upregulated in a knockin mouse model expressing pathogenic LRRK2 and that exosomal release prevents the apoptosis-mediated cell death of neurons from this mouse. These findings identify compensatory pathways that are upregulated by expression of pathogenic mutations disrupting neuronal autophagy. These pathways contribute to the maintenance of cellular homeostasis and thus may delay neurodegenerative disease progression over the short term, but have the potential to exacerbate degeneration over the longer term through the release of proinflammatory components such as mitochondrial DNA.
DOI: 10.15468/dl.noi2yq
title: Occurrence Download

description: A dataset containing 4095263 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orchidaceae"
 ]
}

 The dataset includes 4095263 records from 1561 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002896-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hahhz5
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dampiera prasiolitica Hislop & K.A.Sheph."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152946-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbzp9d
title: Occurrence Download

description: A dataset containing 580 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Helodermatidae"
 ]
}

 The dataset includes 580 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219316-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yqybaz
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex balcanicus Rech.fil.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083781-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.go02iu
title: Occurrence Download

description: A dataset containing 314 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mayaheros beani (Jordan, 1889)"
 ]
}

 The dataset includes 314 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003258-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zz6b3t
title: Occurrence Download

description: A dataset containing 825 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "Geometry POLYGON((-123.64014 41.37681,-114.76318 41.37681,-114.76318 46.92026,-123.64014 46.92026,-123.64014 41.37681))",
 "TaxonKey is Ochotona princeps (Richardson, 1828)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 825 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010533-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8xgxvf
title: Occurrence Download

description: A dataset containing 2212 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is RIVM (NL) - Earthworm Observations in Soil Samples"
 ]
}

 The dataset includes 2212 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238340-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4s4nwx
title: Occurrence Download

description: A dataset containing 3319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-39.76973 33.57969,69.76973 33.57969,69.76973 77.42031,-39.76973 77.42031,-39.76973 33.57969))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scapania aequiloba (Schwägr.) Dumort."
 ]
}

 The dataset includes 3319 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083786-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6ddq5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Festuca arenicola (Prodan) Soó",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083784-231120084113126/datasets/export for details.
DOI: 10.15468/dl.nzlk8s
title: Occurrence Download

description: A dataset containing 13216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidoptera",
 "HasCoordinate is TRUE",
 "Geometry POLYGON((-77.14900208 5.45680094,-73.89620209 5.45680094,-73.89620209 9.00013924,-77.14900208 9.00013924,-77.14900208 5.45680094))"
 ]
}

 The dataset includes 13216 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010526-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uyjxqc
title: Occurrence Download

description: A dataset containing 11057 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Lannea A.Rich."
 ]
}

 The dataset includes 11057 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258927-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ag6awj
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cymopterus sessiliflorus (W.L.Theob. & C.C.Tseng) R.L.Hartm."
 ]
}

 The dataset includes 102 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152947-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zy3me
title: Occurrence Download

description: A dataset containing 2342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Festuca auquieri Kerguélen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2342 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083790-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybxwre
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)"
 ]
}

 The dataset includes 77 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010536-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wuwzac
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Croton chilensis Müll.Arg."
 ]
}

 The dataset includes 153 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010529-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5e5cb
title: Occurrence Download

description: A dataset containing 2249 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adelges tsugae Annand, 1924"
 ]
}

 The dataset includes 2249 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074553-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y48zq9
title: Occurrence Download

description: A dataset containing 493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Festuca billyi Kerguélen & Plonka",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 493 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083795-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vcmsok
title: Occurrence Download

description: A dataset containing 300745 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-101.27747 22.31959,-101.49719 21.11525,-100.59631 20.6225,-98.72864 21.15624,-98.71765 21.9838,-99.1571 22.57344,-100.88196 22.58358,-101.27747 22.31959))"
 ]
}

 The dataset includes 300745 records from 532 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010531-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kh7m9j
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Festuca breistrofferi Chas, Kerguélen & Plonka",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 165 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083802-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcghxa
title: Occurrence Download

description: A dataset containing 4313 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((87.63325 14.84051,165.15278 14.84051,165.15278 45.86590,87.63325 45.86590,87.63325 14.84051))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Setaria viridis (L.) P.Beauv."
 ]
}

 The dataset includes 4313 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324237-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjkoap
title: Occurrence Download

description: A dataset containing 6417 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is IUCN Red List assessment occurrence data for freshwater species native to the Lake Malawi/Nyasa/Niassa Catchment"
 ]
}

 The dataset includes 6417 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010537-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9grbn7
title: Occurrence Download

description: A dataset containing 496 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Agkistrodon de Beauvois, 1799"
 ]
}

 The dataset includes 496 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228761-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v8ev38
title: Occurrence Download

description: A dataset containing 2492 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boletus aereus Bull."
 ]
}

 The dataset includes 2492 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083806-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nn2nfl
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Ateles belzebuth É.Geoffroy Saint-Hilaire, 1806"
 ]
}

 The dataset includes 26 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010539-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mxy8hh
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Croton chiribiquetensis Cordiel"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152948-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5h9hg
title: Occurrence Download

description: A dataset containing 1048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Grallaria przewalskii Taczanowski, 1882)",
 "DecimalLatitude is greater than or equal to -20.85",
 "DecimalLatitude is less than or equal to 2.46666666666667",
 "DecimalLongitude is greater than or equal to -83.8333333333333",
 "DecimalLongitude is less than or equal to -66.15"
 ]
}

 The dataset includes 1048 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324238-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5va7ex
title: Occurrence Download

description: A dataset containing 63533 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Menidia beryllina (Cope, 1867))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 63533 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083809-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3z3jx
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Tremarctos ornatus (F.G.Cuvier, 1825)"
 ]
}

 The dataset includes 53 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010541-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.