cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive118104.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0110035.10fu
title: SH0110035.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive118105.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive118105.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0110036.10fu
title: SH0110036.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive118106.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive118106.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0110037.10fu
title: SH0110037.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive118107.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive118107.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0110038.10fu
title: SH0110038.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.c.3728710_d4.v1
title: Additional file 4: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

description: Supplementary dataset 2. WGBS alignment statistics for the UM-HET3 data. (XLSX 11 kb)
DOI: 10.15468/dl.ruwtky
title: Occurrence Download

description: A dataset containing 488 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Otis tarda Linnaeus, 1758",
 "Year 2000-2024"
 ]
}

 The dataset includes 488 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038657-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3728674_d13
title: Additional file 8: Table S7. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Functional enrichment for genes associated with DR-ameliorated, age-related hypomethylation. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3728719_d3.v1
title: Additional file 3: Table S3. of 
                     Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics

description: InterProScan protein signatures generated annotation for assembled contigs. (XLSX 306 kb)
DOI: 10.6084/m9.figshare.c.3728710_d4
title: Additional file 4: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

description: Supplementary dataset 2. WGBS alignment statistics for the UM-HET3 data. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3728719_d3
title: Additional file 3: Table S3. of 
                     Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics

description: InterProScan protein signatures generated annotation for assembled contigs. (XLSX 306 kb)
DOI: 10.6084/m9.figshare.c.3728719_d4.v1
title: Additional file 4: Table S4a. of 
                     Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics

description: ANOVA analysis and log2 expression values for Sporobolus stapfianus leaf SDATs during both dehydration and rehydration. Table S4b. Fold change (log2) in abundance and cluster assignment for SDATs during dehydration of young leaves of Sporobolus stapfianus. Table S4c. Fold change (log2) and cluster assignment for SDATs during rehydration of young leaves of Sporobolus stapfianus. (XLS 1622 kb)
DOI: 10.6084/m9.figshare.c.3728719_d4
title: Additional file 4: Table S4a. of 
                     Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics

description: ANOVA analysis and log2 expression values for Sporobolus stapfianus leaf SDATs during both dehydration and rehydration. Table S4b. Fold change (log2) in abundance and cluster assignment for SDATs during dehydration of young leaves of Sporobolus stapfianus. Table S4c. Fold change (log2) and cluster assignment for SDATs during rehydration of young leaves of Sporobolus stapfianus. (XLS 1622 kb)
DOI: 10.6084/m9.figshare.c.3728674_d14.v1
title: Additional file 9: Table S8. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Bivalent CGIs undergoing age-related differential methylation. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3728674_d14
title: Additional file 9: Table S8. of Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

description: Bivalent CGIs undergoing age-related differential methylation. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3728710_d6.v1
title: Additional file 6: of Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions

description: Supplementary dataset 3. Accession codes and details of publically available histone datasets used in this analysis. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3729727_d2
title: Additional file 2: of Integrating ethnobiological knowledge into biodiversity conservation in the Eastern Himalayas

description: Reviewed species with ethnobiological records, including rank values, distributional data, ethnobiological uses. (XLSX 126Â kb)
DOI: 10.6084/m9.figshare.c.3729700_d6.v1
title: Additional file 6: Table S3. of Transcriptome analysis of microglia in a mouse model of Rett syndrome: differential expression of genes associated with microglia/macrophage activation and cellular stress

description: Enrichment analysis of DEGs using the ToppGene suite. 5-week down-regulated DEGs (sheet 1); 5-week up-regulated DEGs (sheet 2); 24-week down-regulated DEGs (sheet 3); and 24-week up-regulated DEGs (sheet 4). (XLSX 7206Â kb)
DOI: 10.6084/m9.figshare.c.3729727_d3.v1
title: Additional file 3: of Integrating ethnobiological knowledge into biodiversity conservation in the Eastern Himalayas

description: Some threatened species in the Sikkim Eastern Himalaya. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3729700_d6
title: Additional file 6: Table S3. of Transcriptome analysis of microglia in a mouse model of Rett syndrome: differential expression of genes associated with microglia/macrophage activation and cellular stress

description: Enrichment analysis of DEGs using the ToppGene suite. 5-week down-regulated DEGs (sheet 1); 5-week up-regulated DEGs (sheet 2); 24-week down-regulated DEGs (sheet 3); and 24-week up-regulated DEGs (sheet 4). (XLSX 7206Â kb)
DOI: 10.6084/m9.figshare.c.3729700_d7.v1
title: Additional file 7: Table S4. of Transcriptome analysis of microglia in a mouse model of Rett syndrome: differential expression of genes associated with microglia/macrophage activation and cellular stress

description: DEGs that overlap with M1- and M2-activated genes. Week 5 and week 24 DEGs were compared with genes activated in mouse macrophage following M1 and M2 activation found by Jablonski et al. as described in the Methods section [36]. Each sheet contains the overlap of up- or down-regulated genes with M1- or M2-activated genes. (XLSX 502Â kb)
DOI: 10.6084/m9.figshare.c.3729727_d3
title: Additional file 3: of Integrating ethnobiological knowledge into biodiversity conservation in the Eastern Himalayas

description: Some threatened species in the Sikkim Eastern Himalaya. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3729700_d7
title: Additional file 7: Table S4. of Transcriptome analysis of microglia in a mouse model of Rett syndrome: differential expression of genes associated with microglia/macrophage activation and cellular stress

description: DEGs that overlap with M1- and M2-activated genes. Week 5 and week 24 DEGs were compared with genes activated in mouse macrophage following M1 and M2 activation found by Jablonski et al. as described in the Methods section [36]. Each sheet contains the overlap of up- or down-regulated genes with M1- or M2-activated genes. (XLSX 502Â kb)
DOI: 10.6084/m9.figshare.27923271.v2
title: metadata and coed

description: metadata and code
DOI: 10.6084/m9.figshare.c.3729805_d1.v1
title: Additional file 1: of Amplification and up-regulation of MIR30D was associated with disease progression of cervical squamous cell carcinomas

description: Down-regulated genes in HeLa cells by mir-30d mimic transfection. Over-expression of miR-30d down-regulated 464 genes in HeLa cells. (XLS 76Â kb)
DOI: 10.6084/m9.figshare.c.3729805_d1
title: Additional file 1: of Amplification and up-regulation of MIR30D was associated with disease progression of cervical squamous cell carcinomas

description: Down-regulated genes in HeLa cells by mir-30d mimic transfection. Over-expression of miR-30d down-regulated 464 genes in HeLa cells. (XLS 76Â kb)
DOI: 10.6084/m9.figshare.c.3729805_d3.v1
title: Additional file 3: of Amplification and up-regulation of MIR30D was associated with disease progression of cervical squamous cell carcinomas

description: List of the shared downregulated genes by miR-30d mimic transfection in Hela and SiHa cell lines, as well as the TargetScan-predicted miR-30d targets. One hundred twenty-nine down-regulated genes were shared in Hela and SiHa cell lines, and 68 of these were TargetScan predicted targets of miR-30d. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.c.3729805_d2.v1
title: Additional file 2: of Amplification and up-regulation of MIR30D was associated with disease progression of cervical squamous cell carcinomas

description: Down-regulated genes in HeLa cells by mir-30d mimic transfection. Over-expression of miR-30d down-regulated 376 genes in SiHa cells. (XLS 64Â kb)
DOI: 10.6084/m9.figshare.c.3729805_d2
title: Additional file 2: of Amplification and up-regulation of MIR30D was associated with disease progression of cervical squamous cell carcinomas

description: Down-regulated genes in HeLa cells by mir-30d mimic transfection. Over-expression of miR-30d down-regulated 376 genes in SiHa cells. (XLS 64Â kb)
DOI: 10.6084/m9.figshare.c.3729805_d3
title: Additional file 3: of Amplification and up-regulation of MIR30D was associated with disease progression of cervical squamous cell carcinomas

description: List of the shared downregulated genes by miR-30d mimic transfection in Hela and SiHa cell lines, as well as the TargetScan-predicted miR-30d targets. One hundred twenty-nine down-regulated genes were shared in Hela and SiHa cell lines, and 68 of these were TargetScan predicted targets of miR-30d. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.c.3729820_d1.v1
title: Additional file 1: of Evolutionary origin and function of NOX4-art, an arthropod specific NADPH oxidase

description: Table with a list of the 95 species with complete genomes analyzed, number of proteins found for each NOX gene, their genome source and version. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3729820_d1
title: Additional file 1: of Evolutionary origin and function of NOX4-art, an arthropod specific NADPH oxidase

description: Table with a list of the 95 species with complete genomes analyzed, number of proteins found for each NOX gene, their genome source and version. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3729856_d1.v1
title: Additional file 1: of Distribution of Ki-67 values within HER2 & ER/PgR expression variants of ductal breast cancers as a potential link between IHC features and breast cancer biology

description: All data analysed during this study are included in this published article and its supplementary information file: Breast_Cancer_HRV.xls that contains these variables: Tumor size (in cm); ER (0 or 1); PgR (0 or 1); HER2 (0 to 3); HER2_trinary (0, 1+ to 2+, 3+); Ki67% (in %); Tumor_Tyoe (A, B1, B2, 3 N, H);EM_Cluster (1 to 3). (XLS 125 kb)
DOI: 10.6084/m9.figshare.c.3729832_d10.v1
title: Additional file 9: of Genomic history of the origin and domestication of common bean unveils its closest sister species

description: Table S18. GO terms associated to domestication PCGs common to 2CODs. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3729832_d9.v1
title: Additional file 8: of Genomic history of the origin and domestication of common bean unveils its closest sister species

description: Table S17. PCGs and functional categories introgressing from domesticated into wild subpopulations. (XLSX 149 kb)
DOI: 10.6084/m9.figshare.27291525
title: <b>Table S1</b>. List of references and data used in the meta-analysis

description: <b>Table S1</b>. List of references and data used in the meta-analysis
DOI: 10.6084/m9.figshare.27291525.v2
title: <b>Table S1</b>. List of references and data used in the meta-analysis

description: <b>Table S1</b>. List of references and data used in the meta-analysis
DOI: 10.6084/m9.figshare.c.3729832_d10
title: Additional file 9: of Genomic history of the origin and domestication of common bean unveils its closest sister species

description: Table S18. GO terms associated to domestication PCGs common to 2CODs. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3729832_d9
title: Additional file 8: of Genomic history of the origin and domestication of common bean unveils its closest sister species

description: Table S17. PCGs and functional categories introgressing from domesticated into wild subpopulations. (XLSX 149 kb)
DOI: 10.6084/m9.figshare.c.3729853_d3.v1
title: Additional file 3: of Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation

description: Unique gene family list. List of locus tag identifiers and predicted functions of unique gene families identified by MCL clustering. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3729853_d5.v1
title: Additional file 5: of Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation

description: Plasmid integrations. Table detailing chromosomal regions sharing significant homology to previously sequenced lactococcal plasmids. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3729856_d1
title: Additional file 1: of Distribution of Ki-67 values within HER2 & ER/PgR expression variants of ductal breast cancers as a potential link between IHC features and breast cancer biology

description: All data analysed during this study are included in this published article and its supplementary information file: Breast_Cancer_HRV.xls that contains these variables: Tumor size (in cm); ER (0 or 1); PgR (0 or 1); HER2 (0 to 3); HER2_trinary (0, 1+ to 2+, 3+); Ki67% (in %); Tumor_Tyoe (A, B1, B2, 3 N, H);EM_Cluster (1 to 3). (XLS 125 kb)
DOI: 10.6084/m9.figshare.c.3729853_d4.v1
title: Additional file 4: of Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation

description: KEGG ontologies. Overview of the presence or absence of complete intact KEGG modules in Lactococcus. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3729853_d3
title: Additional file 3: of Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation

description: Unique gene family list. List of locus tag identifiers and predicted functions of unique gene families identified by MCL clustering. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3729853_d7.v1
title: Additional file 7: of Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation

description: Multilocus supertree orthologues and 16S rRNA genes list. List of locus tag identifiers and predicted functions of 596 orthologous protein sequences which were concatenated to generate the multilocus supertree and list of locus tag identifiers used to generate the 16S rRNA tree. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3729853_d4
title: Additional file 4: of Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation

description: KEGG ontologies. Overview of the presence or absence of complete intact KEGG modules in Lactococcus. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3729853_d5
title: Additional file 5: of Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation

description: Plasmid integrations. Table detailing chromosomal regions sharing significant homology to previously sequenced lactococcal plasmids. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3729853_d7
title: Additional file 7: of Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation

description: Multilocus supertree orthologues and 16S rRNA genes list. List of locus tag identifiers and predicted functions of 596 orthologous protein sequences which were concatenated to generate the multilocus supertree and list of locus tag identifiers used to generate the 16S rRNA tree. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3730972_d8.v1
title: Additional file 17: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_Schwann_BRD4. (BED 916 kb)
DOI: 10.6084/m9.figshare.c.3730972_d8
title: Additional file 17: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_Schwann_BRD4. (BED 916 kb)
DOI: 10.6084/m9.figshare.c.3730972_d9.v1
title: Additional file 18: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_Schwann_H3K27Ac. (BED 195 kb)
DOI: 10.6084/m9.figshare.c.3730972_d9
title: Additional file 18: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: SE_Schwann_H3K27Ac. (BED 195 kb)
DOI: 10.6084/m9.figshare.c.3730972_d10.v1
title: Additional file 19: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: DHS_consensus. (BED 3694 kb)
DOI: 10.6084/m9.figshare.c.3730972_d10
title: Additional file 19: of Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer

description: DHS_consensus. (BED 3694 kb)
DOI: 10.15468/dl.6af3mr
title: Occurrence Download

description: A dataset containing 7972 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bactrocera dorsalis (Hendel, 1912)"
 ]
}

 The dataset includes 7972 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038658-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.