cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/pbx-6rk-m6l
title: Vallonia costata (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1za-lzt-bfy
title: Littoraria scabra (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hb8-enl-0hx
title: Zonitoides nitidus (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k21-sb0-rpa
title: Oreohelix strigosa depressa (T. D. A. Cockerell, 1890)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tmv-g2x-c4x
title: Ledella pustulosa (Jeffreys, 1876)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9kz-e02-rzb
title: Alvania auberiana (A. d'Orbigny, 1842)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k8w-zap-sdx
title: Pennaria disticha Goldfuss, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/psz-60c-f2j
title: Oxymeris felina (Dillwyn, 1817)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cmd-fby-8ct
title: Sertularella gayi (Lamouroux, 1821)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m49-kve-ah1
title: Euconulus alderi (J. E. Gray, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/41c-ynf-cld
title: Cypraea tigris Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vep-w7q-g1r
title: Balea Gray, 1824

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4qg-32w-88s
title: Cochlicopa A. Férussac, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hmp-dqd-al2
title: Vertigo angustior Jeffreys, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/llj-xxj-nrl
title: Lambis scorpius (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g0d-arc-a3d
title: Vertigo angustior Jeffreys, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rw6-gew-yl4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g2k-4hx-daf
title: Vallonia costata (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vk6-2sf-9wn
title: Eudendrium ramosum (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zqx-zfj-vpm
title: Strombus pugilis Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bxp-c4k-9b3
title: Littorinidae Children, 1834

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fpq-h5c-tnn
title: Glans trapezia (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eth-xya-1mm
title: Hydrobiidae W. Stimpson, 1865

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y70-k23-010
title: Sepiola atlantica A. d'Orbigny, 1842

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ak7-cpa-3j0
title: Carychium minimum O. F. Müller, 1774

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wrf-18y-ata
title: Euconulus alderi (J. E. Gray, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pc7-bmm-f6n
title: Barleeia unifasciata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r9g-ql6-g9v
title: Afroconulus Van Mol & van Bruggen, 1971

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w04-w9w-hp3
title: Scissurella costata A. d'Orbigny, 1824

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.bpqqrq
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chromolaena odorata",
 "Country is Haiti",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003874-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/4r2-j36-vjg
title: Lima marioni P. Fischer, 1882

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e53-49b-00s
title: Littorina saxatilis (Olivi, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/25p-qrr-99h
title: Perpolita hammonis (Strøm, 1765)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cd7-l5y-jkl
title: Eudendrium rameum (Pallas, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9bp-a9b-9g8
title: Ischnochiton striolatus (J. E. Gray, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nqj-ky7-m7c
title: Anomalodiscus squamosus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nfy-c62-a5r
title: Oxychilus alliarius (J. S. Miller, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pg6-jrl-69d
title: Rupestrella philippii (Cantraine, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/meq-6mm-tyy
title: Aglaophenia kirchenpaueri (Heller, 1868)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kyx-6qd-dqn
title: Lepidopleurus cajetanus (Poli, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qj4-95m-q88
title: Eoacmaea pustulata (Helbling, 1779)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.9asd78
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chromolaena odorata",
 "Country is Jamaica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 44 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003875-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/4nq-bw4-rgy
title: Leptoconchus infungites A. Gittenberger & E. Gittenberger, 2011

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pgc-n6r-q3h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nm4-0va-jvk
title: Viviparidae J. E. Gray, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/trh-7tf-2ws
title: Barleeia unifasciata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/amc-swm-ywf
title: Nerita grossa Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xfe-xll-zcn
title: Alvania lineata Risso, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/579-5jg-c5l
title: Cittarium pica (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2qf-hpd-mn2
title: Trochidae Rafinesque, 1815

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g81-dv8-py0
title: Lithopoma phoebium (Röding, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k9q-zwc-bya
title: Diloma R. A. Philippi, 1845

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cj0-bep-vxh
title: Cochlostoma paladilhianum (Saint-Simon, 1869)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xc6-0kg-2e0
title: Cellana H. Adams, 1869

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/44e-6gy-47h
title: Pecten keppelianus G. B. Sowerby III, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wts-xlb-fp3
title: Diodora gibberula (Lamarck, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qmf-8ab-dj9
title: Littorina littorea (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6fn-pfv-r87
title: Rissoa parva (da Costa, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vmr-h0p-6zg
title: Rissoa membranacea (J. Adams, 1800)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d1g-8r9-ayc
title: Jujubinus striatus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wn0-yky-har
title: Tudorella ferruginea (Lamarck, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2y6-76e-6lg
title: Onoba semicostata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9se-xk2-ngw
title: Onoba semicostata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ydb-kbs-v99
title: Pila scutata (Mousson, 1848)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h66-tv2-j4y
title: Cyclophorus reevei Hidalgo, 1888

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kga-m69-9s3
title: Cyclophorus dodrans Mabille, 1887

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4mx-k12-ppg
title: Pomatias elegans (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/frb-n2p-4b9
title: Similipecten similis (Laskey, 1811)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e43-rqy-rfs
title: Thiara Röding, 1798

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kct-b52-7r3
title: Cochlostoma septemspirale (Razoumowsky, 1789)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fm1-8ft-g98
title: Omphalotropis columellaris Quadras & Möllendorff, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rvr-rjm-na6
title: Ovulidae J. Fleming, 1822

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gg8-57m-84y
title: Clypeolum latissimum (Broderip, 1833)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qa7-d7b-942
title: Bolma rugosa (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pn5-wk6-8gs
title: Peringiella elegans (Locard, 1891)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.57837/actris-ares/e5s8-pg23
title: ACTRIS-EARLINET 2025 aerosol extinction profiles at 355nm over DUS Dushanbe - Tajikistan

description: ACTRIS-EARLINET 2025 aerosol extinction profiles at 355nm over DUS Dushanbe - Tajikistan.
This dataset collects all the aerosol extinction profiles at 355nm collected in 2025 at the aerosol remote sensing DUS station (Dushanbe - Tajikistan). This dataset is incremental: data collected in 2025 are added as soon as a new observation is collected in 2025 and added to the ACTRIS/EARLINET database.
DOI: 10.3535/hq7-9ep-w34
title: Leptothyra

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sdx-nt7-s0a
title: Cyclophoridae J. E. Gray, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fbt-8xx-3js
title: Leptopoma L. Pfeiffer, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v9z-svj-aeh
title: Haliotis midae Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4a2-2gs-30b
title: Palliolum incomparabile (Risso, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/adc-48f-bcf
title: Pomacea glauca (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6sc-zky-ph7
title: Emarginula paivana (Crosse, 1867)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/slg-2kg-b5d
title: Pterocyclos W. H. Benson, 1832

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sa3-bgt-l5z
title: Similipecten similis (Laskey, 1811)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vmd-y0b-ck4
title: Pecten keppelianus G. B. Sowerby III, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l1j-3l9-4m6
title: Patella candei A. d'Orbigny, 1840

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l2w-ves-bl0
title: Patella caerulea Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5eq-39x-ab0
title: Alvania subcrenulata (Bucquoy, Dautzenberg & Dollfus, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pbx-qrm-lyc
title: Rissoa parva (da Costa, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6qk-cwv-kmn
title: Sulcospira testudinaria (von dem Busch, 1842)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pyy-cvy-t4a
title: Pusillina munda (Monterosato, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ve4-jz1-0px
title: Pleuropoma Möllendorff, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2tp-gkt-lkf
title: Turbo bruneus (Röding, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f9x-4ra-2b9
title: Patella pellucida Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4fb-c9f-0z9
title: Leptopoma intermedium E. von Martens, 1867

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xhj-7yb-3r7
title: Littorina saxatilis (Olivi, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fxa-gy6-7wd
title: Littoraria pallescens (R. A. Philippi, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jg7-g5p-jh4
title: Pascula ochrostoma (Blainville, 1832)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rx0-nyc-zyh
title: Ervilia castanea (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tns-btg-375
title: Cellana flava (F. W. Hutton, 1873)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4vs-wdp-3tb
title: Haliotis pustulata Reeve, 1846

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gj9-35l-xwq
title: Testudinalia testudinalis (O. F. Müller, 1776)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/249-86k-ej5
title: Fissurella barbadensis (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tz2-gs5-3dw
title: Obscurella obscura (Draparnaud, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/52f-e4c-a55
title: Clanculus Montfort, 1810

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jlt-x42-b3t
title: Alvania cancellata (da Costa, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d93-nx1-h6t
title: Cittarium pica (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fx9-qhy-gtg
title: Alvania cancellata (da Costa, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rf0-8jf-g26
title: Turbo argyrostomus argyrostomus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rsh-sgd-afh
title: Rissoa ventricosa Desmarest, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xmv-j5r-7s6
title: Bankivia fasciata (Menke, 1830)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r29-l14-cmc
title: Cochlostoma septemspirale septemspirale (Razoumowsky, 1789)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9v5-vma-amp
title: Similipecten similis (Laskey, 1811)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mwx-4x5-8y1
title: Similipecten similis (Laskey, 1811)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/192-ssq-fdk
title: Cyathopoma meredithae (van Bruggen, 1983)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p2m-11z-v5p
title: Obscurella obscura (Draparnaud, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sa8-43h-jl2
title: Littorina littorea (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5ta-xq8-71c
title: Clanculus clanguloides (W. Wood, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fz9-k0m-l82
title: Coralliophaga lithophagella (Lamarck, 1819)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16781206
title: NicheSphere reveals Spp1⁺ macrophages as central hubs coordinating fibrotic remodeling in myeloproliferative neoplasms

description: Bone marrow fibrosis in myeloproliferative neoplasms arises from interactions between mutant hematopoietic clones and fibrosis-driving stromal cells. We identify Spp1⁺ macrophages as central “communication hubs” integrating inflammatory and fibrotic programs via spatial proximity, ECM signaling, and cytokine activation. Using dual lineage tracing, single-cell and multiplet RNA sequencing, and  a condition specific cell-colocalization and communication tool named NicheSphere, we show that Spp1⁺ macrophages form core communication hubs with osteoCAR cells, fibroblasts, and megakaryocytes.

This repository contains physically interacting cells datasets related to these results and the code used to produce them.

Final data files are in the "final_data" folder:

adata_singlets_final.h5ad

Singlets data with final cell type names in the metadata "annotation" column (processing done in Python in PIC_data.ipynb) 

adata_singlets_final_imp.h5ad

(MAGIC) Imputated singlets data with final cell type names in the metadata "annotation" column (processing done in Python in PIC_data.ipynb)

adata_doublets_final.h5ad

Doublets data with final doublet cluster annotation in in the metadata "max_pair" column (processing done in Python in PIC_data.ipynb) 

adata_doublets_final_imp.h5ad

(MAGIC) Imputated doublets data with final doublet cluster annotation in the metadata "max_pair" column (processing done in Python in PIC_data.ipynb) 

Phenotype (TPO or EV) is indicated in the metadata "stage" columns for these datasets.

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Other intermediate data files which were used in the scripts can be found in the folders "rds" and "h5ad" and are described in the README files in each of these folders.

Analysis code is in the "code" folder and resulting data files and images are located in folders "res_data" and "figures" respectively.

Database related files are in the "csv" folder, as well as files related to doublets annotation (BayesPrism deconvolution results).