cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3812704_d3
title: Additional file 3: Table S3. of The complete mitochondrial DNA of three monozoic tapeworms in the Caryophyllidea: a mitogenomic perspective on the phylogeny of eucestodes

description: Skewness and AÂ +Â T content (%) of the protein-coding genes (PCGs), tRNAs, rRNA genes, each codon position of PCGs and non-coding region of the mitochondrial genome of the cestodes Atractolytocestus huronensis, Khawia sinensis, Breviscolex orientalis and Schyzocotyle acheilognathi (CN). (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3812704_d2
title: Additional file 2: Table S2. of The complete mitochondrial DNA of three monozoic tapeworms in the Caryophyllidea: a mitogenomic perspective on the phylogeny of eucestodes

description: Characteristics of the 54 cestode mitochondrial genomes as well as two trematode outgroups in this study. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3812704_d1.v1
title: Additional file 1: Table S1. of The complete mitochondrial DNA of three monozoic tapeworms in the Caryophyllidea: a mitogenomic perspective on the phylogeny of eucestodes

description: Primers used to amplify and sequence the mitochondrial genome of the cestodes Atractolytocestus huronensis, Khawia sinensis, Breviscolex orientalis and Schyzocotyle acheilognathi (CN). (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3812704_d2.v1
title: Additional file 2: Table S2. of The complete mitochondrial DNA of three monozoic tapeworms in the Caryophyllidea: a mitogenomic perspective on the phylogeny of eucestodes

description: Characteristics of the 54 cestode mitochondrial genomes as well as two trematode outgroups in this study. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3812704_d1
title: Additional file 1: Table S1. of The complete mitochondrial DNA of three monozoic tapeworms in the Caryophyllidea: a mitogenomic perspective on the phylogeny of eucestodes

description: Primers used to amplify and sequence the mitochondrial genome of the cestodes Atractolytocestus huronensis, Khawia sinensis, Breviscolex orientalis and Schyzocotyle acheilognathi (CN). (XLSX 26Â kb)
DOI: 10.15468/dl.7gn5n5
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Branchiostegus argentatus (Cuvier, 1830)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035438-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3812599_d16
title: Additional file 9: Table S4. of Molecular phylogeny reveals food plasticity in the evolution of true ladybird beetles (Coleoptera: Coccinellidae: Coccinellini)

description: Specimens used in this study with voucher identification (Australian National Insect Collection), data, and corresponding GenBank accession numbers. (XLS 35 kb)
DOI: 10.6084/m9.figshare.c.3812599_d12
title: Additional file 5: Table S2. of Molecular phylogeny reveals food plasticity in the evolution of true ladybird beetles (Coleoptera: Coccinellidae: Coccinellini)

description: The best (BIC) multiple sequence alignment partitioning scheme with corresponding substitution models generated with PartitionFinder (version 1.1.1; [41]). (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3812599_d12.v1
title: Additional file 5: Table S2. of Molecular phylogeny reveals food plasticity in the evolution of true ladybird beetles (Coleoptera: Coccinellidae: Coccinellini)

description: The best (BIC) multiple sequence alignment partitioning scheme with corresponding substitution models generated with PartitionFinder (version 1.1.1; [41]). (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3812599_d10.v1
title: Additional file 3: Supermatrix S1. of Molecular phylogeny reveals food plasticity in the evolution of true ladybird beetles (Coleoptera: Coccinellidae: Coccinellini)

description: The nucleotide multiple sequence alignment (MSA), used for the phylogenetic analysis, its partitions, nucleotide composition information and percentage of gaps and ambiguities per taxa. It contains 52 taxa identified by the species name, their voucher number and the gene fragments: WGL, TOPO, COI, CADXM and CADMC. (NEX 171 kb)
DOI: 10.6084/m9.figshare.c.3812599_d10
title: Additional file 3: Supermatrix S1. of Molecular phylogeny reveals food plasticity in the evolution of true ladybird beetles (Coleoptera: Coccinellidae: Coccinellini)

description: The nucleotide multiple sequence alignment (MSA), used for the phylogenetic analysis, its partitions, nucleotide composition information and percentage of gaps and ambiguities per taxa. It contains 52 taxa identified by the species name, their voucher number and the gene fragments: WGL, TOPO, COI, CADXM and CADMC. (NEX 171 kb)
DOI: 10.6084/m9.figshare.c.3812632_d1
title: Additional file 1: Table S1. of Genome-wide identification and expression analysis of SBP-like transcription factor genes in Moso Bamboo (Phyllostachys edulis)

description: Oligonucleotide primers used in qRT-PCR assays for all 32 PeSPL genes. Table S2. Gene names and locus information for the SPL proteins in rice and maize. Table S3. Protein sequences and lengths of the major motifs identified by MEME in the putative PeSPL proteins. Table S4. Nucleotide substitution rates for the paralogous SPL gene pairs identified in the moso bamboo genome. Table S5. Nucleotide substitution rates for the orthologous SPL gene pairs between moso bamboo and rice. Table S6. Summary of abiotic stress-inducible cis-elements in the promoter regions of SPL genes in moso bamboo. Table S7. Microarray expression data for the 32 SPL genes in moso bamboo. These primary data was downloaded from NCBI, and then the relative expression level (log10 expression values) of 7 different issues or development stages was obtained after a series of manual processing. L, leaf; P1, early panicle; P2, advanced panicle; R, root; Rh, rhizome; S1, 20-cm shoot; S2, 50-cm shoot. (ZIP 104Â kb)
DOI: 10.6084/m9.figshare.c.3812632_d1.v1
title: Additional file 1: Table S1. of Genome-wide identification and expression analysis of SBP-like transcription factor genes in Moso Bamboo (Phyllostachys edulis)

description: Oligonucleotide primers used in qRT-PCR assays for all 32 PeSPL genes. Table S2. Gene names and locus information for the SPL proteins in rice and maize. Table S3. Protein sequences and lengths of the major motifs identified by MEME in the putative PeSPL proteins. Table S4. Nucleotide substitution rates for the paralogous SPL gene pairs identified in the moso bamboo genome. Table S5. Nucleotide substitution rates for the orthologous SPL gene pairs between moso bamboo and rice. Table S6. Summary of abiotic stress-inducible cis-elements in the promoter regions of SPL genes in moso bamboo. Table S7. Microarray expression data for the 32 SPL genes in moso bamboo. These primary data was downloaded from NCBI, and then the relative expression level (log10 expression values) of 7 different issues or development stages was obtained after a series of manual processing. L, leaf; P1, early panicle; P2, advanced panicle; R, root; Rh, rhizome; S1, 20-cm shoot; S2, 50-cm shoot. (ZIP 104Â kb)
DOI: 10.6084/m9.figshare.c.3812608_d5
title: Additional file 5: Table S4. of Genomic, proteomic and bioinformatic analysis of two temperate phages in Roseobacter clade bacteria isolated from the deep-sea water

description: The predicted ORFs in vB_ThpS-P1 and vB_PeaS-P1 and their best-matches in the NCBI non-redundant (NR) protein database and NCBI viral protein database. The degree of similarity and BLASTP expect values are shown in brackets. (XLS 45Â kb)
DOI: 10.6084/m9.figshare.c.3812608_d5.v1
title: Additional file 5: Table S4. of Genomic, proteomic and bioinformatic analysis of two temperate phages in Roseobacter clade bacteria isolated from the deep-sea water

description: The predicted ORFs in vB_ThpS-P1 and vB_PeaS-P1 and their best-matches in the NCBI non-redundant (NR) protein database and NCBI viral protein database. The degree of similarity and BLASTP expect values are shown in brackets. (XLS 45Â kb)
DOI: 10.6084/m9.figshare.c.3812608_d4.v1
title: Additional file 4: Table S3. of Genomic, proteomic and bioinformatic analysis of two temperate phages in Roseobacter clade bacteria isolated from the deep-sea water

description: Abundance and distribution of gpT genes of Mu-like phages in different Tara Oceans samples. (XLS 91Â kb)
DOI: 10.6084/m9.figshare.c.3812608_d4
title: Additional file 4: Table S3. of Genomic, proteomic and bioinformatic analysis of two temperate phages in Roseobacter clade bacteria isolated from the deep-sea water

description: Abundance and distribution of gpT genes of Mu-like phages in different Tara Oceans samples. (XLS 91Â kb)
DOI: 10.15468/dl.ddnswt
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Branchiostegus albus Dooley, 1978",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 42 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035439-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3810229_d3
title: Additional file 3: of Genome-wide analysis of UDP-glycosyltransferase super family in Brassica rapa and Brassica oleracea reveals its evolutionary history and functional characterization

description: List of tandem arrays of UGT genes among A. thaliana, B. rapa, and B. oleracea. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3810229_d3.v1
title: Additional file 3: of Genome-wide analysis of UDP-glycosyltransferase super family in Brassica rapa and Brassica oleracea reveals its evolutionary history and functional characterization

description: List of tandem arrays of UGT genes among A. thaliana, B. rapa, and B. oleracea. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3810229_d2.v1
title: Additional file 2: of Genome-wide analysis of UDP-glycosyltransferase super family in Brassica rapa and Brassica oleracea reveals its evolutionary history and functional characterization

description: UGT orthologous gene pairs in A. thaliana compared with B. rapa and B. oleracea. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3810229_d2
title: Additional file 2: of Genome-wide analysis of UDP-glycosyltransferase super family in Brassica rapa and Brassica oleracea reveals its evolutionary history and functional characterization

description: UGT orthologous gene pairs in A. thaliana compared with B. rapa and B. oleracea. (XLSX 13Â kb)
DOI: 10.15468/dl.gv8cxc
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ommastrephes bartramii (Lesueur, 1821)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035440-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3810175_d5.v1
title: Additional file 5: of Effects of a social stimulus on gene expression in a mouse model of fragile X syndrome

description: Overlapping genes of comparisons in each brain region. The differentially expressed genes (DEGs) that overlapped in specific comparisons are listed. The first column indicates DEGs significantly regulated in both the mutant versus wildtype comparison in the non-social condition (MUvsWTinNS) and in the social versus non-social conditions in the wildtype animals (SvsNSinWT). The second column indicates DEGs significantly regulated in both the MUvsWTinNS condition and in the interaction between genotype and stimulus exposure. The third column indicates DEGs significantly regulated in both the SvsNSinWT condition and in the interaction between genotype and stimulus exposure. Overlap in all three comparisons indicates DEGs that were significantly regulated in the MUvsWTinNS, SvsNSinWT, and interaction analyses. Analyses from each brain region are shown on separate sheets, accessed by the tabs at the bottom. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3810175_d5
title: Additional file 5: of Effects of a social stimulus on gene expression in a mouse model of fragile X syndrome

description: Overlapping genes of comparisons in each brain region. The differentially expressed genes (DEGs) that overlapped in specific comparisons are listed. The first column indicates DEGs significantly regulated in both the mutant versus wildtype comparison in the non-social condition (MUvsWTinNS) and in the social versus non-social conditions in the wildtype animals (SvsNSinWT). The second column indicates DEGs significantly regulated in both the MUvsWTinNS condition and in the interaction between genotype and stimulus exposure. The third column indicates DEGs significantly regulated in both the SvsNSinWT condition and in the interaction between genotype and stimulus exposure. Overlap in all three comparisons indicates DEGs that were significantly regulated in the MUvsWTinNS, SvsNSinWT, and interaction analyses. Analyses from each brain region are shown on separate sheets, accessed by the tabs at the bottom. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3810175_d4
title: Additional file 4: of Effects of a social stimulus on gene expression in a mouse model of fragile X syndrome

description: Differentially expressed genes in the prefrontal cortex (XLSX 5258Â kb)
DOI: 10.6084/m9.figshare.c.3810175_d4.v1
title: Additional file 4: of Effects of a social stimulus on gene expression in a mouse model of fragile X syndrome

description: Differentially expressed genes in the prefrontal cortex (XLSX 5258Â kb)
DOI: 10.6084/m9.figshare.c.3810175_d3.v1
title: Additional file 3: of Effects of a social stimulus on gene expression in a mouse model of fragile X syndrome

description: Differentially expressed genes in medial amygdala (XLSX 5377Â kb)
DOI: 10.6084/m9.figshare.c.3810175_d3
title: Additional file 3: of Effects of a social stimulus on gene expression in a mouse model of fragile X syndrome

description: Differentially expressed genes in medial amygdala (XLSX 5377Â kb)
DOI: 10.6084/m9.figshare.c.3810175_d2.v1
title: Additional file 2: of Effects of a social stimulus on gene expression in a mouse model of fragile X syndrome

description: Differentially expressed genes in lateral amygdala (XLSX 5388Â kb)
DOI: 10.6084/m9.figshare.c.3810175_d2
title: Additional file 2: of Effects of a social stimulus on gene expression in a mouse model of fragile X syndrome

description: Differentially expressed genes in lateral amygdala (XLSX 5388Â kb)
DOI: 10.15468/dl.t7zvvj
title: Occurrence Download

description: A dataset containing 15195897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chinese Taipei",
 "OccurrenceStatus is Present",
 "Year 2014-2024"
 ]
}

 The dataset includes 15195897 records from 318 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035434-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3808621_d3
title: Additional file 3: Table S9. of The colonization and divergence patterns of Brandt’s vole (Lasiopodomys brandtii) populations reveal evidence of genetic surfing

description: A) Allele frenquency of each locus for Brandt’s vole populations in southeastern and northeastern distribution; B) Allele frenquency of each locus for Brandt’s vole populations in northeastern and western distribution. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3808621_d3.v1
title: Additional file 3: Table S9. of The colonization and divergence patterns of Brandt’s vole (Lasiopodomys brandtii) populations reveal evidence of genetic surfing

description: A) Allele frenquency of each locus for Brandt’s vole populations in southeastern and northeastern distribution; B) Allele frenquency of each locus for Brandt’s vole populations in northeastern and western distribution. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3808609_d1.v1
title: Additional file 1: of Examination of multiple UGT1A and DPYD polymorphisms has limited ability to predict the toxicity and efficacy of metastatic colorectal cancer treated with irinotecan-based chemotherapy: a retrospective analysis

description: The clincal database and UGT1A/DPYD polymorphisms of all study patients. (XLSX 141 kb)
DOI: 10.6084/m9.figshare.c.3808597_d3.v1
title: Additional file 3: of Stable centromere positioning in diverse sequence contexts of complex and satellite centromeres of maize and wild relatives

description: Sequence Read Archive run IDs. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3808609_d1
title: Additional file 1: of Examination of multiple UGT1A and DPYD polymorphisms has limited ability to predict the toxicity and efficacy of metastatic colorectal cancer treated with irinotecan-based chemotherapy: a retrospective analysis

description: The clincal database and UGT1A/DPYD polymorphisms of all study patients. (XLSX 141 kb)
DOI: 10.6084/m9.figshare.c.3808597_d3
title: Additional file 3: of Stable centromere positioning in diverse sequence contexts of complex and satellite centromeres of maize and wild relatives

description: Sequence Read Archive run IDs. (XLSX 41 kb)
DOI: 10.15468/dl.hqvbm2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ommastrephes brevimanus (Gould, 1852)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035441-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3807595_d2
title: Additional file 2: of Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

description: The microarray hybridization data for the liver tissue. The file shows the liver tissue microarray data used for the functional analyses. (XLS 10474Â kb)
DOI: 10.6084/m9.figshare.c.3807595_d1
title: Additional file 1: of Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

description: The microarray hybridization data for the breast muscle tissue. The file shows the breast muscle tissue microarray data used for the functional analyses. (XLS 10476Â kb)
DOI: 10.6084/m9.figshare.c.3807595_d1.v1
title: Additional file 1: of Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds

description: The microarray hybridization data for the breast muscle tissue. The file shows the breast muscle tissue microarray data used for the functional analyses. (XLS 10476Â kb)
DOI: 10.6084/m9.figshare.c.3806581_d3.v1
title: Additional file 3: of Identification and characterization of long intergenic noncoding RNAs in bovine mammary glands

description: List of lincRNA information identified in bovine mammary glands of this study; Additional file 3a. List of 112 novel lincRNA sequences; Additional file 3b. List of 72 known lincRNA sequences, Additional file 3c. GTF file of 184 lincRNAs. (XLSX 114 kb)
DOI: 10.6084/m9.figshare.c.3806581_d1.v1
title: Additional file 1: of Identification and characterization of long intergenic noncoding RNAs in bovine mammary glands

description: RNA-Seq datasets used in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3806581_d1
title: Additional file 1: of Identification and characterization of long intergenic noncoding RNAs in bovine mammary glands

description: RNA-Seq datasets used in this study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3806512_d6
title: Additional file 6: Table S4. of miR-629-3p may serve as a novel biomarker and potential therapeutic target for lung metastases of triple-negative breast cancer

description: KEGG pathway analysis of miR-629-3p. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3806512_d6.v1
title: Additional file 6: Table S4. of miR-629-3p may serve as a novel biomarker and potential therapeutic target for lung metastases of triple-negative breast cancer

description: KEGG pathway analysis of miR-629-3p. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3806512_d5.v1
title: Additional file 5: Table S3. of miR-629-3p may serve as a novel biomarker and potential therapeutic target for lung metastases of triple-negative breast cancer

description: GO annotation analysis of miR-629-3p. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3806512_d5
title: Additional file 5: Table S3. of miR-629-3p may serve as a novel biomarker and potential therapeutic target for lung metastases of triple-negative breast cancer

description: GO annotation analysis of miR-629-3p. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3806512_d4
title: Additional file 4: Table S2. of miR-629-3p may serve as a novel biomarker and potential therapeutic target for lung metastases of triple-negative breast cancer

description: Target genes of miR-629-3p predicted by eight programs. (XLSX 2295 kb)
DOI: 10.6084/m9.figshare.c.3805513_d2
title: MOESM2 of An enhanced vector-free allele exchange (VFAE) mutagenesis protocol for genome editing in a wide range of bacterial species

description: Additional file 2. Schematic representation and comparison of the original and modified VFAE procedures.
DOI: 10.6084/m9.figshare.c.3805513_d2.v1
title: MOESM2 of An enhanced vector-free allele exchange (VFAE) mutagenesis protocol for genome editing in a wide range of bacterial species

description: Additional file 2. Schematic representation and comparison of the original and modified VFAE procedures.
DOI: 10.6084/m9.figshare.c.3805489_d1
title: Additional file 1: of Correlations between inflammatory cytokines, muscle damage markers and acute postoperative pain following primary total knee arthroplasty

description: File name: The raw data.xlsx. Title of data: The raw data of each participant. Description of data: The data include the general and operative information, PDQ and NRS scores, serum inflammatory cytokines and muscle damage markers levels, and synovial fluid inflammatory cytokines levels of each participant. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3805489_d1.v1
title: Additional file 1: of Correlations between inflammatory cytokines, muscle damage markers and acute postoperative pain following primary total knee arthroplasty

description: File name: The raw data.xlsx. Title of data: The raw data of each participant. Description of data: The data include the general and operative information, PDQ and NRS scores, serum inflammatory cytokines and muscle damage markers levels, and synovial fluid inflammatory cytokines levels of each participant. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3804679_d3.v1
title: MOESM3 of Comparative metabolic profiling of the lipid-producing green microalga Chlorella reveals that nitrogen and carbon metabolic pathways contribute to lipid metabolism

description: Additional file 3. Original Data Table.
DOI: 10.15468/dl.g4jqer
title: Occurrence Download

description: A dataset containing 40547 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cycadales"
 ]
}

 The dataset includes 40547 records from 427 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035442-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.