cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13485488
title: The Pathogen-Host Interactions Database, version 4.17

description: PHI-base is an online database (available at phi-base.org) that catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. PHI-base is a valuable resource in the discovery of genes in medically and agronomically important pathogens, which may be potential targets for chemical intervention.

Each entry in PHI-base is curated by domain experts and is supported by strong experimental evidence (for example, gene disruption and gene complementation experiments), as well as literature references in which the original experiments are described. Each gene in PHI-base is presented with its nucleotide sequence and deduced amino acid sequence (available in a FASTA file), as well as a detailed description of the predicted protein's function during the host infection process. To facilitate data interoperability, we have annotated genes using ontologies, controlled vocabularies, and links to external sources (including UniProt, Gene Ontology, Enzyme Commission, NCBI Taxonomy, EMBL, PubMed and FRAC).

This PHI-base dataset is a Frictionless Data Package that contains an export of the PHI-base database in CSV format (comma-separated values), plus a FASTA file with sequences for each gene in the database. This version of the dataset, version 4.17, contains 5,521 publications, covering 22,408 pathogen–host interactions and 9,973 pathogen genes across 296 pathogen species and 249 host species.

Erratum

Please note that the funding information included in the readme file for this dataset (specifically README.md and README.html) is incorrect. The correct funding sources are Growing Health [BB/X010953/1; BBS/E/RH/230003A] and Delivering Sustainable Wheat [BB/X011003/1; BBS/E/RH/230001B], both ultimately funded by the Biotechnology and Biological Sciences Research Council (BBSRC). The metadata for this dataset has been amended to use the correct funding sources (updated 16 September 2024).
DOI: 10.5281/zenodo.5356871
title: The Pathogen-Host Interactions Database, version 4.12

description: PHI-base is an online database (available at phi-base.org) that catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. PHI-base is a valuable resource in the discovery of genes in medically and agronomically important pathogens, which may be potential targets for chemical intervention. Each entry in PHI-base is curated by domain experts and is supported by strong experimental evidence (for example, gene disruption and gene complementation experiments), as well as literature references in which the original experiments are described. Each gene in PHI-base is presented with its nucleotide sequence and deduced amino acid sequence, as well as a detailed description of the predicted protein's function during the host infection process. To facilitate data interoperability, we have annotated genes using controlled vocabularies and links to external sources (UniProt, Gene Ontology, Enzyme Commission, NCBI Taxonomy, EMBL, PubMed and FRAC). The PHI-base dataset is published as a single table in CSV format (comma-separated values). The data contains information from 4,387 publications, covering 18,190 pathogen–host interactions and 8,411 genes across 279 pathogen species and 228 host species.
DOI: 10.5519/qd.4go9kklh
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (825219 records)
DOI: 10.15468/dl.97hphe
title: Occurrence Download

description: A dataset containing 10814 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenaea courbaril L."
 ]
}

 The dataset includes 10814 records from 435 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017675-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74b9g7
title: Occurrence Download

description: A dataset containing 629 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichiurus japonicus Temminck & Schlegel, 1844"
 ]
}

 The dataset includes 629 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017676-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5gfjd
title: Occurrence Download

description: A dataset listing the 4315 species recorded in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((47.23607 -19.2252,47.24071 -19.2252,47.88722 -19.21304,47.8625 -18.64164,47.24071 -18.63774,47.23607 -18.63774,47.23607 -19.2252))"
 ]
}

 The dataset's 4315 records were derived from 228 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017654-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.2909/1df682be-0877-48ec-9acc-1c678e62188e
title: Ozone-depleting substances, 2024

description: Aggregated data on 'Consumption of ozone-depleting substances (ODS)'. Data reported by companies to the European Environment Agency (EEA) under Article 27 of Regulation (EC) No 1005/2009 (EU Ozone Regulation). Data reported by companies on the production, import, export, destruction, and use of ozone-depleting substances in the EU-27, 2006-2023.
DOI: 10.15468/dl.ey6eb9
title: Occurrence Download

description: A dataset containing 3438 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenaea stigonocarpa Mart. ex Hayne"
 ]
}

 The dataset includes 3438 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017677-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10090840
title: Videos for: Modeling 2D gravity-driven flow in unsaturated porous media for different infiltration rates

description: This dataset contains videos of transient flow simulations in unsaturated porous media flow related to the manuscript: Modeling 2D gravity-driven flow in unsaturated porous media for different infiltration rates.
DOI: 10.5281/zenodo.10090841
title: Videos for: Modeling 2D gravity-driven flow in unsaturated porous media for different infiltration rates

description: This dataset contains videos of transient flow simulations in unsaturated porous media flow related to the manuscript: Modeling 2D gravity-driven flow in unsaturated porous media for different infiltration rates.
DOI: 10.15468/dl.vktpcf
title: Occurrence Download

description: A dataset containing 1307 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenaea oblongifolia Huber"
 ]
}

 The dataset includes 1307 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017678-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9t85e
title: Occurrence Download

description: A dataset containing 7648 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alouatta seniculus (Linnaeus, 1766)"
 ]
}

 The dataset includes 7648 records from 235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017679-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvjafv
title: Occurrence Download

description: A dataset containing 383 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenaea intermedia Ducke"
 ]
}

 The dataset includes 383 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017680-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15472/2jhker
title: Abundancia, estructura poblacional y producción de frutos de la palma de corozo (Bactris guineensis) en el departamento del Cesar

description: I2D-BIO_2024_010. Este conjunto de datos fue desarrollado con el fin de caracterizar las poblaciones del corozo (Bactris guineensis) y su capacidad de producción de frutos, en el departamento del Cesar, con el fin de generar información que permita planificar el manejo sostenible de la especies y presentar el protocolo de manejo sostenible de frutos de corozo (Bactris guineensis), en la Jurisdicción de la Corporación Autónoma Regional del Cesar – Corpocesar, con el propósito de cumplir con lo establecido en el Decreto 690 de 2021 sobre manejo sostenible de flora silvestre.
DOI: 10.15468/dl.pa9y8q
title: Occurrence Download

description: A dataset containing 200203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Alburnoides bipunctatus (Bloch, 1782))",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 200203 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017660-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6x75nr
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Datura candida Pasq."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017681-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpkne8
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "Geometry POLYGON ((-180 30, -180 10, 180 10, 180 30, -180 30))",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Sargassum horneri subsp. furcatodentatum Kuntze, 1880, Sargassum horneri subsp. spathulatum (J.Ag.) Okamura, 1902, Sargassum horneri subsp. densum C.Agardh, 1820, Sargassum horneri (Turner) C.Agardh, 1820)"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017682-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ht4wtg
title: Occurrence Download

description: A dataset listing the 11 species recorded in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Chanos chanos (Forsskål, 1775)"
 ]
}

 The dataset's 11 records were derived from 166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017666-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vdfs4n
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diplometopon zarudnyi Nikolsky, 1907"
 ]
}

 The dataset includes 198 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276187-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.baongj
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iris vartanii Foster"
 ]
}

 The dataset includes 75 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007053-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmm6m4
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Neomys fodiens (Pennant, 1771)"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012775-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdeke6
title: Occurrence Download

description: A dataset containing 89532 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epidalea calamita (Laurenti, 1768)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 89532 records from 461 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0213836-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thfjx8
title: Occurrence Download

description: A dataset containing 1398348 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bacteria"
 ]
}

 The dataset includes 1398348 records from 562 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047403-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csqrut
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "GadmGid is RUS.30_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Falco vespertinus Linnaeus, 1766",
 "Year 2013-2023"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012777-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gujt42
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Platymantis dorsalis (Duméril, 1853)",
 "Year 2000-2018"
 ]
}

 The dataset's 1 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276178-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kyuy4
title: Occurrence Download

description: A dataset containing 7689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dasypus novemcinctus Linnaeus, 1758",
 "Year 2015-2022"
 ]
}

 The dataset includes 7689 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117051-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwz3re
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Nepal",
 "TaxonKey is Castanopsis hystrix Hook.f. & Thomson ex A.DC."
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198915-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yzwnnx
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tripogon capillatus Jaub. & Spach"
 ]
}

 The dataset includes 29 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022276-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwe3q9
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cordylus imkeae Mouton & Van Wyk, 1994"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276180-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5at8jb
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tree-dwelling ant survey (Hymenoptera, Formicidae) in Mitaraka, French Guiana"
 ]
}

 The dataset includes 76 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133793-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.enfz3c
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atractus zebrinus (Jan, 1862)"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276190-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rk4hgb
title: Occurrence Download

description: A dataset containing 7689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dasypus novemcinctus Linnaeus, 1758",
 "Year 2015-2022"
 ]
}

 The dataset includes 7689 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117046-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bbtj8u
title: Occurrence Download

description: A dataset containing 19099 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Basileuterus belli (Giraud Jr, 1841)"
 ]
}

 The dataset includes 19099 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133792-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dejywc
title: Occurrence Download

description: A dataset containing 1609 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anopheles sinensis Wiedemann, 1828"
 ]
}

 The dataset includes 1609 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281216-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0y9pmz
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OrganismId is 215546",
 "DatasetKey is Field Museum of Natural History (Botany) Seed Plant Collection"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015437-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xbvr64
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Libellulinae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022282-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6944p
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis cymbops Cope, 1864"
 ]
}

 The dataset includes 38 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281198-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npv2sn
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((25.36949 -32.72896,26.30196 -32.71523,26.29097 -32.19337,25.34134 -32.18582,25.36949 -32.72896))",
 "HasCoordinate is true",
 "TaxonKey is Arachnida",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 166 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007059-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhmhtv
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxonomy of cultivated potatoes (Solanum section Petota: Solanaceae)"
 ]
}

 The dataset includes 67 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133810-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efh7xt
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Basidioradulum Nobles"
 ]
}

 The dataset includes 19 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0422726-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3qfr5
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba cholaensis W.W.Sm."
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061770-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkwxrq
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Emoia rufilabialis Mccoy & Webber, 1984"
 ]
}

 The dataset includes 23 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281219-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.