cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/kywlws
title: Flore associée au pied des arbres d'alignement (un boulevard à Dijon, France)

description: Un inventaire floristique a été réalisé au mois d’avril 2010 sur 76 pieds d’arbres d’alignements répartis le long d'un boulevard à Dijon. Quarante sept espèces ont été recensées et le nombre d'individus comptés (FloreBd.csv). Les arbres et leur environnement sont décrits par différentes variables dans le fichier EnvironnementBd.csv. Le fichier TaxonsBd.csv décrit les taxons trouvés.
DOI: 10.15454/kzopzb
title: Data from: Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra

description: This dataset includes analysis files for the paper "Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra"
DOI: 10.15454/lkm6oi
title: A rapid and simple method for assessing and representing genome sequence relatedness : supplementary data

description: This dataset contains supplementary data associated to the publication Briand et al. 2020 (BioRxiv, 569640, ver. 5 peer-reviewed and recommended by PCI Genomics, https://doi.org/10.1101/569640).
DOI: 10.15454/iewmsh
title: Data linked to the published manuscript : The 3D nuclear conformation of the major histocompatibility complex changes upon cell activation both in porcine and human macrophages

description: Various data files for: (i) the analysis of 3D nuclear organization of three regions (class I, II and III) of the major histocompatibility complex (MHC) in porcine and in human macrophages, (ii) the analysis of the expression level of genes targeting each of the three MHC class both in pigs and in humans. Two states were investigated (resting and LPS-activated macrophages).
DOI: 10.15454/iyz0mv
title: Projet Artisols - Espaces bâtis

description: Le projet ArtiSols, soutenu par la Région Occitanie et le Fonds Européen de Développement Régional (FEDER), s’inscrit dans une démarche d’évaluation et de qualification du processus d’artificialisation des sols en région Occitanie. Piloté par INRAE (UMR TETIS), ce projet rassemble des établissements de recherche (INRAE, CNRS, INPT), des services de l’État (DRAAF Occitanie) et de la Région Occitanie (Direction de l’Aménagement, du Foncier et de l’Urbanisme), et les aménageurs BRL et CACG. Les cartographies des espaces bâtis sur la région Occitanie résultent d'une extraction automatique par méthode d'apprentissage profond (deep learning) à partir d'imagerie très haute résolution spatiale (1.5m) SPOT 6/7, pour les années 2015 à 2019. Fichiers fournis sous forme vectorielle.
DOI: 10.15454/j4xopd
title: FeedOmics project - learning and validation databases for blood

description: The FeedOmics project aimed to determine biomarkers of feed efficiency in growing pigs. Here, the files refer to learning and validation databases including transcriptomes of blood from pigs of three different experiments, their class of residual feed intake (RFI+/-) and values for feed conversion ratio (FCR) during test periods.
DOI: 10.15454/jb8lra
title: European Food Science and Technology on pulses : a bibliometric dataset (1980-2018)

description: A bibliometric corpus retrieved from the Web of Knowledge (WoS), dealing with main topics of the Food Science and Technology field, and on pulses (18 species and varieties of pulses cultivated in temperate climates considered). The corpus gathers records such as articles, book, book chapters, and reviews, written by at least one author located in a European country (from UE28).
DOI: 10.15454/jo0kp9
title: Qualifying, quantifying and modelling dispersal in sea trout

description: This dataset contains all the supplementary materials of the article entitled "Sea trout straying rate decreases with distance from river mouth" accepted for publication in Journal of Fish Biology on June 27, 2022.
DOI: 10.15454/jplaya
title: Atmospheric climate dataset from Fontblanche in natura site for year 2014

description: The dataset was produced from experimentation(s) from the network SOERE F-ORE-T on the site of Font-Blanche, located in a Mediterranean forest ecosytem in South-East France. Measurements are about the following variables: air relative humidity, air temperature, cumulative rainfall. The dataset was formatted and published using AnaEE semantic services and vocabularies
DOI: 10.15454/iogznj
title: An appraisal of the role of compositional and ripening parameters on CO2 diffusivity in semi-hard cheese - CO2 diffusivity in semi-hard cheese in relation to salt content

description: value unavailable
DOI: 10.15454/ioxqu2
title: RPG complété 2018 département 57

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 57. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/iql6ge
title: High density genotyping dataset associated to the paper entitled « The genetic history of Mayotte and Madagascar cattle breeds mirrors the complex pattern of human exchanges in Western Indian Ocean » (Magnier et al., 2022)

description: This dataset consists of genotypes of 528 animals belonging to 13 cattle populations for 680338 variants (SNPs) in plink format. The compressed archive contains two files: (i) a genotyping data file named "cattle_680338variants_528individuals_12.ped" (528 rows, 1360682 columns) that contains, for each individual, six information columns (breed ID, animal ID and four columns with data coded 0 or -9) and the genotypes (alleles 1 and 2) for the 680338 SNPs ; and (ii) a map file named "cattle_680338variants_528individuals_12.map" (680338 rows, 4 columns) that contains for each SNP, the autosome number, the SNP name, a column with data coded 0 and the SNP position on autosome.
DOI: 10.15454/irkfhm
title: QTL mapping for aggressiveness variation in F. graminearum revealed one causal mutation in FgVe1 velvet protein

description: Fusarium graminearum is one of the most frequent causal agent of the Fusarium Head Blight in the world, a cereal disease spread throughout the world, reducing grain production and quality. F. graminearum isolates are genetically and phenotypically highly diverse. Notably, remarkable variations of aggressiveness between isolates have been observed, which could reflect an adaptive potential of this pathogen. In this study, we aim to characterize the genetic basis of aggressiveness variation observed in an F1 population, for which genome sequences of both parental strains are available. Aggressiveness was assessed by a panel of in planta and in vitro proxies during two phenotyping trials including, among others, disease severity and mycotoxin accumulation in wheat spike. One major and single QTL was mapped for all the traits measured, on chromosome I, that explained up to 90% of the variance for disease severity. The confidence interval at the QTL spanned 1.2 Mb and contained 428 genes on the reference genome. Of these, four candidates were selected based on the postulate that a non-synonymous mutation affecting protein function was responsible for phenotypic differences. Finally, a mutation was identified and functionally validated in the gene FgVe1, encoding for a velvet protein known to be implicated in pathogenicity and secondary metabolism production in several fungi.
DOI: 10.15454/jbasmv
title: Plan de Gestion des Données de l'IR IN-SYLVA France

description: Le Plan de Gestion de Données (PGD) de l’infrastructure distribuée In-Sylva France définit l’organisation et les moyens mobilisés pour la mise en œuvre de la politique de gestion et valorisation des données. Il porte sur l’organisation générale des systèmes d’information et des données et vient compléter et fédérer les PGD des services proposés.
DOI: 10.15454/jcujdz
title: SEcoMod Project - Meta-analysis dataset

description: This dataset was build in order to conduct a meta-analysis on the influence of landscape and agricultural practices on conservation biological control. It includes: a list of studies selected from a Web Of Science request, an ontology of indicators used to describe landscape and populations, an ontology-based database of the results of studies, and a file describing the variables of all 3 of those elements. It was built as part of the SEcoMod project and was financed by the meta-program Ecoserve (INRA) and the region Occitanie.
DOI: 10.15454/joz2on
title: RPG complété 2019 département 67

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 67. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/kjdwjm
title: Tree size data from three semi-permanent plots of the INRAE Cedar Silviculture network

description: Le réseau Sylviculture Cèdre de INRAE est un réseau de placettes semi-permanentes et de dispositifs expérimentaux en sylviculture qui concerne une seule espèce : le Cèdre de l'Atlas (Cedrus atlantica Manetti). Le réseau se compose : 1) de placettes semi-permanentes, souvent anciennes, installées dans des peuplements soumis à la sylviculture pratiquée par le gestionnaire. Dans quelques cas il peut y avoir deux ou trois placettes sur un même site comportant en outre soit un témoin sans intervention soit plusieurs intensités d'éclaircies mais s'écartant peu des pratiques en usage. Les placettes d'observation forestières acquièrent un caractère « semi-permanent », puisqu’elles font l’objet d'au moins une nouvelle mesure quelques années après leur mise en place. Dans le cas de ce réseau, les mesures ont été répétées 8 ou 9 fois à intervalles réguliers. 2) de dispositifs plus récents testant, outre un témoin sans intervention, différents itinéraires sylvicoles dont certains s'écartent beaucoup des pratiques en usage. Objectifs : Influence de la sylviculture et de la compétition sur la croissance et la production des arbres et des peuplements réguliers de cèdre. Élaboration de modèle de croissance. Influence de la sylviculture sur le comportement (croissance, production et état sanitaire) des arbres face au climat et aux évènements de sécheresse. Élaboration de sylviculture adaptative face au changement climatique. Le jeu de données contient les informations recueillies dans 3 placettes semi-permanentes de ce réseau, toutes trois situées dans le département du Gard - à environ 10km d'Uzès -France. Il concerne la période de 1980 à 2016. Les données de 1966 à 1979 ne figurent pas dans ce jeu.
DOI: 10.15454/kkccip
title: RPG complété 2019 département 82

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 82. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/ks8tls
title: Meta-analysis of tree diversity effects on the abundance, diversity and activity of herbivores' enemies

description: This dataset contains the raw csv file of the data used in the paper "Meta-analysis of tree diversity effects on the abundance, diversity and activity of herbivores' enemies", a glossary.docx file containing the glossary associated with the dataset and the supplementary material used in the study.
DOI: 10.15454/irz9xx
title: Volatile Organic Compound (VOC) fluxes and concentrations over a winter wheat field near Paris France

description: These data were gathered during the COV3ER project, which measured fluxes of VOC over wheat, oilseed rape, maize and green oak in France. This dataset contains fluxes of VOC between a wheat crop and the atmosphere measured with the eddy covariance method, in 2016 in Thiverval-Grignon, France It also contains CO2, water and heat fluxes, as well as meteorological datasets measured by the ICOS instrumentation at the same site.
DOI: 10.15454/ivswrj
title: RPG complété 2019 département 06

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 06. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/izufap
title: GETARI : Generic Evaluation Tool of AgRoclimatic Indicators

description: GETARI is generic evaluation tool to calculate and study climate suitability of areas for cultivation of specific crops. Crops are very dependent of the climatic effects happening during their cycle and those define climate suitability areas for cultivation. Agroclimatic indicators (i.e., heat degree days, frost days and the amount of rainfall over specific periods) are classically used providing synthetic information on the effects of climate on crop functioning.
DOI: 10.15454/jo4jfy
title: RPG complété 2019 département 21

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 21. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/jto5dd
title: Tree inventory data

description: Tree inventory with dimensions and calculations of biomass in a mixed montane and subalpine forest at Chamrousse
DOI: 10.15454/jzuvdn
title: RPG complété 2019 département 44

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 44. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/loebw5
title: UHF RFID measurements on Tageos PET06035-EM4423-001-GT.04.2020

description: UHF RFID measurements on Tageos PET06035-EM4423-001-GT.04.2020 with associated data over beef meat degradation in MAP
DOI: 10.15454/jz33z6
title: RPG complété 2019 département 64

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 64. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/k7sfq5
title: ECOPICS Mycorrhizal data

description: Mycorrhizal data and protocol for a subset of species along the Belledonne Massif (1400 -2400 m asl) gradient. Data are collected by Raphael Biatry
DOI: 10.15454/kcsn4h
title: Bacillus cereus fatty acids during growth at different temperatures

description: This data set presents changes all along growth in fatty acids of three strains of the foodborne pathogenic bacteria Bacillus cereus, two mesophilic (ATCC 14579 and ATCC 10876) and one psychrotrophic (MM3). Each strain was grown at cold and optimal temperatures and fatty acids were analyzed all along growth, during lag, exponential and stationary phases. Fatty acids are expressed as relative abundance in percent of the total fatty acids.
DOI: 10.15454/kfbnr8
title: Microbial community level physiological profiles

description: Microbial activity measured using MicroResp in bulk and rhizospheric soil, at six altudinal levels along an elevation gradient at Massif de Belledonne, France
DOI: 10.15454/kgpnku
title: Données de réplication pour : informations supplémentaires à relier avec un article en soumission

description: protocoles, résultats, et figures supplémentaires pour consultation par les reviewers d'un article en cours de soumission
DOI: 10.15454/knecms
title: Phenology, outer fruit and inner fruit traits in the FruitBreedomics genetic resources material

description: This dataset contains phenotypic data for apple genetic resources from six European institutes. A total of 1350 unique genotypes (mainly old dessert apple cultivars) were phenotyped for at least one trait. Seven traits, flowering period, harvest date, fruit size, given in three forms, fruit size class, fruit average weight, fruit diameter, fruit over-color, fruit acidity, fruit crispness, fruit juiciness and fruit sweetness, are made available in this dataset. The data were obtained from 1984 to 2014, as part of the genetic resources characterization mission of the institutes. Traits were evaluated according to the recommendations of the European Cooperative Programme for Plant Genetic Resources (ECPGR). The first version of this dataset was used in the paper by Cazenave et al. (2021) "Combining genetic resources and elite material populations to improve the accuracy of genomic prediction in apple", G3: Genes, Genomes, Genetics.
DOI: 10.15454/kqs5ek
title: Dataset of water interception and release of soluble carbon by mulches of Maize, Soybean, Rice and Pea residues under contrasting rain intensities

description: The presence of crop residues on the soil surface of no-till cropping systems has important consequences on water flows between the atmosphere, litter layer (mulch) and soil. The consequences of rainfall on the transport of soluble C from litter layers are poorly known, despite their importance for soil carbon (C) and nutrient cycling. We quantified relationships among the rain amount and intensity, the water retention by mulches and the soluble C loss from mulches under rainfall. Mulches of residues from mature crops (maize, soybean and rice) and a cover crop (pea) were placed under continuous simulated rains with intensities of 4, 11 and 24 mm h-1 for 23 hours, and we measured the water interception dynamics of the mulches and the water and soluble C flows under the mulches.
DOI: 10.15454/l4a5rd
title: RPG complété 2019 département 83

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 83. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/lqvmnn
title: Summary statistics of Permanent Organic Pollutants concentration in French topsoils

description: Ce jeu de données fournit des statistiques sommaires sur les concentrations en 2 familles de polluants organiques persistants au niveau national (hydrocarbures aromatiques polycycliques (HAP) et polychlorobiphényles (PCB) ). Les mesures sont issues des résultats d'analyses du RMQS pour les sols de surface. Le réseau RMQS repose sur le suivi de 2200 sites répartis uniformément sur le territoire français (métropole et outre-mer), selon une maille carrée de 16 km de côté. L’évaluation et le suivi de la qualité des sols sont fondés sur l’analyse de propriétés physiques, chimiques et biologiques des sols, associée à la recherche des sources de contamination diffuse et à la connaissance de l’historique de l’occupation et des pratiques de gestion de chaque site. L’ensemble des prélèvements, mesures et observations réalisés sur un site est détaillé dans le Manuel du Réseau de Mesures de la Qualité des Sols. La première campagne de prélèvement en métropole s'est déroulée de 2000 à 2009. Le RMQS couvre également les départements d'Outre-mer : après un déploiement en 2006-2007 aux Antilles, la mise en place du RMQS se poursuit actuellement à la Réunion, à Mayotte et en Guyane. Le système d'observation comprend ainsi les résultats issus de 2171 sites de métropole, répartis sur 2146 cellules et correspondant à la première campagne RMQS (2000 -2009). Les sites recouvrent diverses occupations (grandes cultures, prairies permanentes, forêts , vignes et vergers, milieux peu anthropisés, parcs urbains). Les résultats d’analyses ont été réalisés sur les échantillons composites constitués à partir des prélèvements de la surface d’échantillonnage tels que décrit dans le manuel (25 échantillons élémentaire prélevés à la tarière selon 2 couches de prélèvements (0-30 cm ou bien couche travaillée en sols cultivés et 30-50 cm).   ce jeu de données rassemble des statistiques descriptives construites à partir des observations des sites prélevés au centre de chaque 2146 mailles et sur la couche de surface uniquement. Il permet de caractériser la distribution statistique d'un ensemble de polluants.
DOI: 10.15454/lwbrgr
title: Xcc 8004 Re-annotation Bankit Submission Proof

description: Submission Proof to BanKit downloaded from Bankit "Download your completed submissions". Data were submitted to Bankit, June 10th 2021: LOCUS Xcc-8004 5148708 bp DNA linear BCT 10-JUN-2021 DEFINITION Xanthomonas campestris strain 8004. ACCESSION Xcc-8004 VERSION KEYWORDS . SOURCE Xanthomonas campestris ORGANISM Xanthomonas campestris Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas. REFERENCE 1 (bases 1 to 5148708) AUTHORS Carrere,S., Noel,L., Luneau,J. and Boulanger,A. TITLE Xanthomonas transcriptome inside cauliflower hydathodes reveals bacterial virulence strategies and physiological adaptations at early infection stages JOURNAL unpublished REFERENCE 2 (bases 1 to 5148708) AUTHORS Carrere,S., Noel,L., Luneau,J. and Boulanger,A. TITLE Direct Submission JOURNAL Submitted (09-JUN-2021) LIPME, INRAE/CNRS, 24 Chemin de Borde Rouge, Castanet Tolosan, 31326, FRANCE COMMENT Bankit Comment: Vecscreen Comment:Submitter says Vecscreen match is due to: Publicly available sequence GCA_000012105.1 Bankit Comment: TPA Submission:true Bankit Comment: TPA EVIDENCE:RNAseq Bankit Comment: TOTAL # OF SEQS:1 ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END##
DOI: 10.15454/m5589v
title: RPG complété 2019 département 88

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 88. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/m9p0tt
title: Meta-Analysis-mowing-warming

description: The table contains the data used to quantify the effect of mowing on species richness (SR) and harvested biomass (HB), with two sheets: SR and HB which include each: - cut number comparison - the source publication by author(s) and year of publication, which are listed in full bibliography in the supplementary section “References of the meta-analysis (effect of mowing)” of the published article - means and standard deviations for abandonment (0) and mowing (1) - replicates for each experiment (rep0) and rep (1) - log-response ratios (LRR)
DOI: 10.15454/ilq12t
title: Data from: Identification of the first oomycete mating-type locus sequence in the grapevine downy mildew pathogen, Plasmopara viticola

description: This dataset includes analysis files for the paper "Identification of the first oomycete mating-type locus sequence in the grapevine downy mildew pathogen, Plasmopara viticola", now published in Current Biology (doi.org/10.1016/j.cub.2020.07.057). Archives can contain README files with important information, ignore them at your own risk. If you have any question, request or commentary, you can email the dataverse contact.
DOI: 10.15454/jdsat1
title: Données annuelles de 2014 à 2019,issues des enquêtes sur les pratiques agricoles (phytosanitaires,fertilisation et travail du sol) dans les parcelles du réseau SEBIOPAG,site d'étude des Vallées et Coteaux de Gascogne

description: Données d'enquêtes sur les pratiques agricoles effectuées,obtenues annuellement auprès des agriculteurs du réseau. Saisies sous la base nationale Agrosyst
DOI: 10.15454/k4iwwb
title: Assessment of CO2 solubility coefficient in semi-hard cheese related to ripening conditions - CO2 solubility in semi-hard cheese in relation to temperature

description: value unavailable
DOI: 10.15454/kkz3ts
title: Animal Health Ontology for Livestock

description: AHOL (Animal Health Ontology for Livestock) is an ontology of characteristics defining health issues of livestock in their environment (EOL) linked to their phenotypes (ATOL). AHOL aims to provide a reference ontology of health traits of farm animals for the international scientific and educational communities, farmers, etc.; deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; represent traits as generic as possible for livestock vertebrates; make the AHOL ontology as operational as possible and closely related to measurement techniques; structure the ontology in relation to animal production