cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7273688
title: Robust volumetric models for supporting the management of secondary forest stands in the Southern Brazilian Atlantic Forest

description: Abstract The majority of Atlantic Forest fragments in Southern Brazil are second-growth forests dominated by fast-growing species with considerable market-value timber. Nevertheless, volume prediction models are scarce, especially to estimate tree total volume (i.e., stem plus branches). This study approached the issue through the following aims: to fit and select stem and total volume models (generic and species-specific) using data from 288 harvested trees in a management operation, and to fit generic and species-specific bark factors. The power model embedding diameter at breast height (D) and tree stem or total height (H) presented the greatest prediction strength for both stem and total tree volume. Models including only D to predict total tree volume were similar to double-entry models regarding goodness-of-fit. Therefore, they may be useful in the context of subtropical closed-canopy forests, where the difficulty and uncertainty in H measurements are not trivial. Species-specific models fitted for Miconia cinnamomifolia (DC) Naudin. and Hyeronima alchorneoides Allemão surpassed generic models only for the former species. Nevertheless, the prediction improvement should offset the eventual extra efforts implied in the collection of reliable samples of these species. Finally, bark factors stood as a satisfactory tool for inside bark mean volume estimation.
DOI: 10.7284/125656
title: Gyrocompass data collected during research cruise SAV-16-34 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7273688.v1
title: Robust volumetric models for supporting the management of secondary forest stands in the Southern Brazilian Atlantic Forest

description: Abstract The majority of Atlantic Forest fragments in Southern Brazil are second-growth forests dominated by fast-growing species with considerable market-value timber. Nevertheless, volume prediction models are scarce, especially to estimate tree total volume (i.e., stem plus branches). This study approached the issue through the following aims: to fit and select stem and total volume models (generic and species-specific) using data from 288 harvested trees in a management operation, and to fit generic and species-specific bark factors. The power model embedding diameter at breast height (D) and tree stem or total height (H) presented the greatest prediction strength for both stem and total tree volume. Models including only D to predict total tree volume were similar to double-entry models regarding goodness-of-fit. Therefore, they may be useful in the context of subtropical closed-canopy forests, where the difficulty and uncertainty in H measurements are not trivial. Species-specific models fitted for Miconia cinnamomifolia (DC) Naudin. and Hyeronima alchorneoides Allemão surpassed generic models only for the former species. Nevertheless, the prediction improvement should offset the eventual extra efforts implied in the collection of reliable samples of these species. Finally, bark factors stood as a satisfactory tool for inside bark mean volume estimation.
DOI: 10.6084/m9.figshare.7273691.v1
title: Tomographic assessment of thoracic fungal diseases: a pattern and signs approach

description: Abstract Pulmonary fungal infections, which can be opportunistic or endemic, lead to considerable morbidity and mortality. Such infections have multiple clinical presentations and imaging patterns, overlapping with those of various other diseases, complicating the diagnostic approach. Given the immensity of Brazil, knowledge of the epidemiological context of pulmonary fungal infections in the various regions of the country is paramount when considering their differential diagnoses. In addition, defining the patient immunological status will facilitate the identification of opportunistic infections, such as those occurring in patients with AIDS or febrile neutropenia. Histoplasmosis, coccidioidomycosis, and paracoccidioidomycosis usually affect immunocompetent patients, whereas aspergillosis, candidiasis, cryptococcosis, and pneumocystosis tend to affect those who are immunocompromised. Ground-glass opacities, nodules, consolidations, a miliary pattern, cavitary lesions, the halo sign/reversed halo sign, and bronchiectasis are typical imaging patterns in the lungs and will be described individually, as will less common lesions such as pleural effusion, mediastinal lesions, pleural effusion, and chest wall involvement. Interpreting such tomographic patterns/signs on computed tomography scans together with the patient immunological status and epidemiological context can facilitate the differential diagnosis by narrowing the options.
DOI: 10.6084/m9.figshare.7273685
title: The rates and players of denitrification, dissimilatory nitrate reduction to ammonia (DNRA) and anaerobic ammonia oxidation (anammox) in mangrove soils

description: Abstract Mangroves are ecosystems located in the transition zone between land and sea, characterized by periodic flooding that confer to its unique characteristics. Little is known about the transformation of nutrients that occur during the organic matter degradation in this system. In this study, we monitor the nitrogen transformations in soils from three mangroves with distinct levels of contamination using labeled 15NO3-. We also screened the mangroves metagenomes for the presence of genes that encode enzymes involved in denitrification (nirS, nirK, nosZ, norB and narG), anaerobic oxidation of ammonia (anammox) (hh, hao and hzo) and dissimilatory nitrate reduction to ammonium (DNRA) (nrfA). The transformations of 15NO3- indicated the balance of denitrification over anammox and DNRA in all three mangroves, with lower rates of processes in the mangrove affected by oil contamination. The metagenomic analysis detected 56 sequences related to denitrification, 19 with anammox and 6 with DNRA. Genes related with denitrification were phylogenetically distributed among several groups of bacteria (mainly Gammaproteobacteria). Anammox and DNRA related sequences were affiliated with Planctomycetes and Gammaproteobacteria, respectively. Thus, metagenomic and functional approaches supported the description of denitrification, anammox and DNRA rates in mangrove soils, and identified the major bacterial groups involved in these processes.
DOI: 10.6084/m9.figshare.7273682
title: Bibliometric Analysis for Pattern Exploration in Worldwide Digital Soil Mapping Publications

description: Abstract Bibliometric analyses provide a clear understanding of the scientific performance and relate them with standards of the global scientific production. Soil science is an outstanding and developing field among environmental sciences. Knowledge about soil characteristics and their distribution in the environment has been enriched by the use of new geotechnologies, resulting in what is known as digital soil mapping. Thus, the objective of this work was to characterize the scientific production in digital soil mapping in Brazil and in the world, in the period from 1996 to 2017, in databases such as Scopus and Web of Science. In the general context of increasing numbers of papers, the journal Geoderma published the highest number of related papers. Among the 10 with most published papers, the Revista Brasileira de Ciência do Solo is the only open access journal. Although there are countries at the cutting edge of digital soil mapping such as the United States and Australia, the position of Brazil in the number of papers and authors cannot be overlooked, showing the importance of the nation’s participation in digital soil mapping, as a field of science that can provide guidelines for public policies for the development of agriculture in the country.
DOI: 10.6084/m9.figshare.7273685.v1
title: The rates and players of denitrification, dissimilatory nitrate reduction to ammonia (DNRA) and anaerobic ammonia oxidation (anammox) in mangrove soils

description: Abstract Mangroves are ecosystems located in the transition zone between land and sea, characterized by periodic flooding that confer to its unique characteristics. Little is known about the transformation of nutrients that occur during the organic matter degradation in this system. In this study, we monitor the nitrogen transformations in soils from three mangroves with distinct levels of contamination using labeled 15NO3-. We also screened the mangroves metagenomes for the presence of genes that encode enzymes involved in denitrification (nirS, nirK, nosZ, norB and narG), anaerobic oxidation of ammonia (anammox) (hh, hao and hzo) and dissimilatory nitrate reduction to ammonium (DNRA) (nrfA). The transformations of 15NO3- indicated the balance of denitrification over anammox and DNRA in all three mangroves, with lower rates of processes in the mangrove affected by oil contamination. The metagenomic analysis detected 56 sequences related to denitrification, 19 with anammox and 6 with DNRA. Genes related with denitrification were phylogenetically distributed among several groups of bacteria (mainly Gammaproteobacteria). Anammox and DNRA related sequences were affiliated with Planctomycetes and Gammaproteobacteria, respectively. Thus, metagenomic and functional approaches supported the description of denitrification, anammox and DNRA rates in mangrove soils, and identified the major bacterial groups involved in these processes.
DOI: 10.7284/125653
title: Meteorological Station data collected during research cruise SAV-16-34 using a RM Young 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7273679
title: Effects of Amount of Glass Fiber Laminate Skins in Sandwich Composite of Filled Core

description: The purpose of this work is the study of the mechanical behavior of two different sandwich composite in static and fatigue analysis of three-point bending, using different amount of glass fiber laminated as skins, remaining with same total thickness. The specimens are composed of glass fiber cloth and epoxy resin. The static tests provided the mechanical properties used in numerical simulations as well as fatigue tests analysis. Applying controlled displacement, it was analyzed load reactions, lifetime and failure modes during fatigue tests. Identifying the failures modes in microscopic analyses it was perceived adhesive fracture in fiber/matrix as first damage and core rupture as ultimate damage.
DOI: 10.6084/m9.figshare.7273682.v1
title: Bibliometric Analysis for Pattern Exploration in Worldwide Digital Soil Mapping Publications

description: Abstract Bibliometric analyses provide a clear understanding of the scientific performance and relate them with standards of the global scientific production. Soil science is an outstanding and developing field among environmental sciences. Knowledge about soil characteristics and their distribution in the environment has been enriched by the use of new geotechnologies, resulting in what is known as digital soil mapping. Thus, the objective of this work was to characterize the scientific production in digital soil mapping in Brazil and in the world, in the period from 1996 to 2017, in databases such as Scopus and Web of Science. In the general context of increasing numbers of papers, the journal Geoderma published the highest number of related papers. Among the 10 with most published papers, the Revista Brasileira de Ciência do Solo is the only open access journal. Although there are countries at the cutting edge of digital soil mapping such as the United States and Australia, the position of Brazil in the number of papers and authors cannot be overlooked, showing the importance of the nation’s participation in digital soil mapping, as a field of science that can provide guidelines for public policies for the development of agriculture in the country.
DOI: 10.6084/m9.figshare.7273679.v1
title: Effects of Amount of Glass Fiber Laminate Skins in Sandwich Composite of Filled Core

description: The purpose of this work is the study of the mechanical behavior of two different sandwich composite in static and fatigue analysis of three-point bending, using different amount of glass fiber laminated as skins, remaining with same total thickness. The specimens are composed of glass fiber cloth and epoxy resin. The static tests provided the mechanical properties used in numerical simulations as well as fatigue tests analysis. Applying controlled displacement, it was analyzed load reactions, lifetime and failure modes during fatigue tests. Identifying the failures modes in microscopic analyses it was perceived adhesive fracture in fiber/matrix as first damage and core rupture as ultimate damage.
DOI: 10.6084/m9.figshare.7273673
title: Effects of the photobiomodulation using different energy densities on the periodontal tissues under orthodontic force in rats with type 2 diabetes mellitus

description: Abstract To evaluate the impact of the GaAlAs diode laser with energy densities of 160 J/cm2, 320 J/cm2, and 640 J/cm2 on the periodontal tissues under continuous orthodontic force application and on the rate of orthodontic tooth movement in rats with type-2 diabetes mellitus. The intensity of primary alveolar bone formation was also investigated through the immune-positive osteocytes for OPN antibody. Forty adult male Wistar rats were divided into eight groups of 5 rats: normoglycemic (N), 160 J-laser-normoglycemic (160 J-LN), 320 J-laser-normoglycemic (320 J-LN), 640 J-laser-normoglycemic (640 J-LN), diabetic (D), 160 J-laser-diabetic (160 J-LD), 320 J-laser-diabetic (320 J-LD), and 640 J-laser-diabetic (640 J-LD) rats. Diabetes mellitus was induced by a single intravenous injection of 40 mg/kg monohydrated-alloxan. An orthodontic force magnitude of 20cN was applied. The laser parameters were continuous emission of 780-nm wavelength, output power of 20mW, and fiber probe with a spot size of 0.04 cm in diameter. Radiographic, histomorphological, and immunohistochemical analysis were performed after a period of 21 days. The photobiomodulation using the energy density of 640 J/cm2 strongly stimulated the alveolar bone formation and contributed the reorganization of the soft periodontal tissues, followed by the 320 J/cm2. Extensive alveolar bone loss, intense infiltration of inflammatory cells, and degradation of the PDJ tissue were mainly found in the D and 160 J-LD groups. The rate of orthodontic tooth movement was represented by the interdental distance between the cementoenamel junctions of the right mandibular first and second molars . This distance was larger in the diabetic groups (D: 39.98±1.97, 160 J-LD: 34.84±6.01, 320 J-LD: 29.82±1.73, and 640 J-LD: 35.47±4.56) than in the normoglycemic groups (N: 21.13±1.19; 160 J-LN: 22.69±0.72, 320 J-LN: 22.28±0.78, and 640 J-LN: 24.56±2.11). The number of osteopontin-positive osteocytes was significantly greater in the 640 J-LD (14.72 ± 0.82; p &lt; 0.01) and 640 J-LN (13.62 ± 1.33; p &lt; 0.05) groups than with D (9.82 ± 1.17) and 160 J-LD (9.77 ± 1.10) groups. Therefore, the energy density of 640 J/cm2 provided the best maintenance and integrity of the periodontal tissue microarchitecture under continuous orthodontic force when compared with the other dosages, mainly in the uncontrolled diabetic rats. The interdental distance was greater in the D and 160 J-LD groups due to presence of severe periodontitis caused by diabetes plus the mechanical stress generated by continuous orthodontic forces, implying, thus, an insufficient biostimulatory effect for the dosage of 160 J/cm2.
DOI: 10.6084/m9.figshare.7273676
title: Use of Experimental Design to Evaluate the Effect of the Incorporation of Quartzite Residues in Ceramic Mass for Porcelain Tile Production

description: The potential of using quartzite residues in the composition of an industrial ceramic mass for porcelain tile production was investigated through experimental design. Chemical, physical and microstructural analyses were accomplished to understand how the incorporation of quartzite residues affects the material, before and after sintering. Central composite design was used to analyze the effects of firing temperature (1143; 1160; 1200; 1240; 1257ºC) and residue content (1.76; 3; 6; 9; 10.24 wt.%) on the physical-mechanical properties of the material, and regression models correlating these factors to the response variables linear shrinkage, water absorption, apparent density and flexural strength were adjusted. Firing temperature had statistically significant effect on the response variables, so that the elevation of its levels contributed to the properties improvement. Residue content presented non-significant effect. In conclusion, specimens containing quartzite residues, up to 10.24 wt.%, sintered at 1240 and 1257ºC, fulfil the ISO 13006 requirements for porcelain tiles.
DOI: 10.7284/125652
title: Singlebeam Echosounder data collected during research cruise SAV-16-34 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7273676.v1
title: Use of Experimental Design to Evaluate the Effect of the Incorporation of Quartzite Residues in Ceramic Mass for Porcelain Tile Production

description: The potential of using quartzite residues in the composition of an industrial ceramic mass for porcelain tile production was investigated through experimental design. Chemical, physical and microstructural analyses were accomplished to understand how the incorporation of quartzite residues affects the material, before and after sintering. Central composite design was used to analyze the effects of firing temperature (1143; 1160; 1200; 1240; 1257ºC) and residue content (1.76; 3; 6; 9; 10.24 wt.%) on the physical-mechanical properties of the material, and regression models correlating these factors to the response variables linear shrinkage, water absorption, apparent density and flexural strength were adjusted. Firing temperature had statistically significant effect on the response variables, so that the elevation of its levels contributed to the properties improvement. Residue content presented non-significant effect. In conclusion, specimens containing quartzite residues, up to 10.24 wt.%, sintered at 1240 and 1257ºC, fulfil the ISO 13006 requirements for porcelain tiles.
DOI: 10.6084/m9.figshare.7273670
title: Influence of preheating and post-curing on a novel fiber-reinforced composite post material

description: Abstract The aim of this study was to investigate the influence of preheating and post-curing methods on diametral tensile strength (DTS), flexural strength (FS), knoop microhardness (KHN), and degree of conversion (DC) of an experimental fiber-reinforced composite (FRC). Specimens (30 wt% of 3-mm-short E-glass fiber, 22.5 wt% of methacrylated-based resin and 47.5 wt% of filler particles) were subjected to: P – photocuring at 1500 mW/cm2 for 40 s (control); P/M – photocuring and microwave post-curing (540W/5 minutes); P/A – photocuring and autoclave post-curing (120°C/15 minutes); PH-P – preheating (60°C) and photocuring; PH-P/M – preheating, photocuring and microwave post-curing; and PH-P/A – preheating, photocuring and autoclave post-curing. Specimens for DTS (Ø 3 x 6 mm) and FS (25 x 2 x 2 mm) were tested at Instron 5965. KHN employed a 50g load for 30s. DC was measured using FTIR spectroscopy. Statistical analysis employed: factorial analysis, normality test, one-way ANOVA and Tukey’s HSD test, independent T-test and the Dunnett test. Interaction between factors was not significant (P&gt;0.05). Preheating promoted significantly higher values of FS and KHN (p = 0.0001). Post-curing promoted significantly higher values for KHN (p = 0.0001). For DTS (p = 0.066) and DC (p= 0.724) no statistical difference was found between groups. SEM images showed that preheating promoted better interaction between glass fibers and resin matrix. Preheating increased FS, KHN and DTS, and post-curing increased KHN. DC was not affected by both methods. Preheating and post-curing methods can be used to improve some mechanical properties of FRCs’ but degree of conversion remains unaffected.
DOI: 10.6084/m9.figshare.7273673.v1
title: Effects of the photobiomodulation using different energy densities on the periodontal tissues under orthodontic force in rats with type 2 diabetes mellitus

description: Abstract To evaluate the impact of the GaAlAs diode laser with energy densities of 160 J/cm2, 320 J/cm2, and 640 J/cm2 on the periodontal tissues under continuous orthodontic force application and on the rate of orthodontic tooth movement in rats with type-2 diabetes mellitus. The intensity of primary alveolar bone formation was also investigated through the immune-positive osteocytes for OPN antibody. Forty adult male Wistar rats were divided into eight groups of 5 rats: normoglycemic (N), 160 J-laser-normoglycemic (160 J-LN), 320 J-laser-normoglycemic (320 J-LN), 640 J-laser-normoglycemic (640 J-LN), diabetic (D), 160 J-laser-diabetic (160 J-LD), 320 J-laser-diabetic (320 J-LD), and 640 J-laser-diabetic (640 J-LD) rats. Diabetes mellitus was induced by a single intravenous injection of 40 mg/kg monohydrated-alloxan. An orthodontic force magnitude of 20cN was applied. The laser parameters were continuous emission of 780-nm wavelength, output power of 20mW, and fiber probe with a spot size of 0.04 cm in diameter. Radiographic, histomorphological, and immunohistochemical analysis were performed after a period of 21 days. The photobiomodulation using the energy density of 640 J/cm2 strongly stimulated the alveolar bone formation and contributed the reorganization of the soft periodontal tissues, followed by the 320 J/cm2. Extensive alveolar bone loss, intense infiltration of inflammatory cells, and degradation of the PDJ tissue were mainly found in the D and 160 J-LD groups. The rate of orthodontic tooth movement was represented by the interdental distance between the cementoenamel junctions of the right mandibular first and second molars . This distance was larger in the diabetic groups (D: 39.98±1.97, 160 J-LD: 34.84±6.01, 320 J-LD: 29.82±1.73, and 640 J-LD: 35.47±4.56) than in the normoglycemic groups (N: 21.13±1.19; 160 J-LN: 22.69±0.72, 320 J-LN: 22.28±0.78, and 640 J-LN: 24.56±2.11). The number of osteopontin-positive osteocytes was significantly greater in the 640 J-LD (14.72 ± 0.82; p &lt; 0.01) and 640 J-LN (13.62 ± 1.33; p &lt; 0.05) groups than with D (9.82 ± 1.17) and 160 J-LD (9.77 ± 1.10) groups. Therefore, the energy density of 640 J/cm2 provided the best maintenance and integrity of the periodontal tissue microarchitecture under continuous orthodontic force when compared with the other dosages, mainly in the uncontrolled diabetic rats. The interdental distance was greater in the D and 160 J-LD groups due to presence of severe periodontitis caused by diabetes plus the mechanical stress generated by continuous orthodontic forces, implying, thus, an insufficient biostimulatory effect for the dosage of 160 J/cm2.
DOI: 10.7284/125657
title: TSG (Thermosalinograph) data collected during research cruise SAV-16-34 using a Sea-Bird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition