cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2074231.v2
title: Supplementary BEAST XML files

description: BEAST XML files containing the data and the selected models needed to recreate the results we present in Figures 1 through 4 of our paper.
DOI: 10.6084/m9.figshare.2074105
title: Detecting Attention Dominating Moments Across Media Types - Tweet Stream

description: Tweets spanning September 2015. Parallel corpus to Signal Media 1 Million Articles set for NewsIR'16.
DOI: 10.6084/m9.figshare.2951263.v473
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2073913
title: Swansea University APC Data 2015

description: This dataset provides a record of publications that have been funded from the RCUK Gold Open Access block grant received by Swansea University for the calendar year 2015. Sheet 1 - Data for the period January – July 2015 previously released on Figshare as January – June 2015 data Sheet 2 - Period August – December 2015 (new data)Released with the permission of Swansea University, Information Services & Systems (ISS).
DOI: 10.6084/m9.figshare.2073631
title: Evaluation of carcinogenic potential of the herbicide glyphosate, drawing on tumor incidence data from fourteen chronic/carcinogenicity rodent studies

description: Glyphosate, an herbicidal derivative of the amino acid glycine, was introduced to agriculture in the 1970s. Glyphosate targets and blocks a plant metabolic pathway not found in animals, the shikimate pathway, required for the synthesis of aromatic amino acids in plants. After almost forty years of commercial use, and multiple regulatory approvals including toxicology evaluations, literature reviews, and numerous human health risk assessments, the clear and consistent conclusions are that glyphosate is of low toxicological concern, and no concerns exist with respect to glyphosate use and cancer in humans. This manuscript discusses the basis for these conclusions. Most toxicological studies informing regulatory evaluations are of commercial interest and are proprietary in nature. Given the widespread attention to this molecule, the authors gained access to carcinogenicity data submitted to regulatory agencies and present overviews of each study, followed by a weight of evidence evaluation of tumor incidence data. Fourteen carcinogenicity studies (nine rat and five mouse) are evaluated for their individual reliability, and select neoplasms are identified for further evaluation across the data base. The original tumor incidence data from study reports are presented in the online data supplement. There was no evidence of a carcinogenic effect related to glyphosate treatment. The lack of a plausible mechanism, along with published epidemiology studies, which fail to demonstrate clear, statistically significant, unbiased and non-confounded associations between glyphosate and cancer of any single etiology, and a compelling weight of evidence, support the conclusion that glyphosate does not present concern with respect to carcinogenic potential in humans.
DOI: 10.6084/m9.figshare.2073913.v1
title: Swansea University APC Data 2015

description: This dataset provides a record of publications that have been funded from the RCUK Gold Open Access block grant received by Swansea University for the calendar year 2015. Sheet 1 - Data for the period January – July 2015 previously released on Figshare as January – June 2015 data Sheet 2 - Period August – December 2015 (new data)Released with the permission of Swansea University, Information Services & Systems (ISS).
DOI: 10.6084/m9.figshare.2073631.v1
title: Evaluation of carcinogenic potential of the herbicide glyphosate, drawing on tumor incidence data from fourteen chronic/carcinogenicity rodent studies

description: Glyphosate, an herbicidal derivative of the amino acid glycine, was introduced to agriculture in the 1970s. Glyphosate targets and blocks a plant metabolic pathway not found in animals, the shikimate pathway, required for the synthesis of aromatic amino acids in plants. After almost forty years of commercial use, and multiple regulatory approvals including toxicology evaluations, literature reviews, and numerous human health risk assessments, the clear and consistent conclusions are that glyphosate is of low toxicological concern, and no concerns exist with respect to glyphosate use and cancer in humans. This manuscript discusses the basis for these conclusions. Most toxicological studies informing regulatory evaluations are of commercial interest and are proprietary in nature. Given the widespread attention to this molecule, the authors gained access to carcinogenicity data submitted to regulatory agencies and present overviews of each study, followed by a weight of evidence evaluation of tumor incidence data. Fourteen carcinogenicity studies (nine rat and five mouse) are evaluated for their individual reliability, and select neoplasms are identified for further evaluation across the data base. The original tumor incidence data from study reports are presented in the online data supplement. There was no evidence of a carcinogenic effect related to glyphosate treatment. The lack of a plausible mechanism, along with published epidemiology studies, which fail to demonstrate clear, statistically significant, unbiased and non-confounded associations between glyphosate and cancer of any single etiology, and a compelling weight of evidence, support the conclusion that glyphosate does not present concern with respect to carcinogenic potential in humans.
DOI: 10.6084/m9.figshare.2073628
title: Cost of skeletal complications from bone metastases in six European countries

description: <b>Objective</b> Patients with bone metastases or lesions secondary to solid tumors or multiple myeloma often experience bone complications (skeletal-related events [SREs]—radiation to bone, pathologic fracture, surgery to bone, and spinal cord compression); however, recent data that can be used to assess the value of treatments to prevent SREs across European countries are limited. This study aimed to provide estimates of health resource utilization (HRU) and cost associated with all SRE types in Europe. HRU data were reported previously; cost data are reported herein. <b>Methods</b> Eligible patients from 49 centers across Austria (<i>n</i> = 57), the Czech Republic (<i>n</i> = 59), Finland (<i>n</i> = 60), Greece (<i>n</i> = 59), Portugal (<i>n</i> = 59), and Sweden (<i>n</i> = 62) had bone metastases or lesions secondary to breast, lung, or prostate cancer, or multiple myeloma, and ≥1 index SRE (a SRE preceded by a SRE-free period of ≥ 6.5 months). SRE-related costs were estimated from a payer perspective using health resource utilization data from patient charts (before and after the index SRE diagnosis). Country-specific unit costs were from 2010 and local currencies were converted to 2010 euros. <b>Results</b> The mean costs across countries were €7043, €5242, €11,101, and €11,509 per radiation to bone, pathologic fracture, surgery to bone, and spinal cord compression event, respectively. Purchasing power parity (PPP)-adjusted mean cost ratios were similar in most countries, with the exception of radiation to bone. <b>Limitations</b> The overall burden of SREs may have been under-estimated owing to home visits and evaluations outside the hospital setting not being reported here. <b>Conclusions</b> All SREs were associated with substantial costs. Variation in SRE-associated costs between countries was most likely driven by differences in treatment practices and unit costs.
DOI: 10.6084/m9.figshare.2074105.v1
title: Tweet IDs

description: Tweets spanning September 2015. Parallel corpus to Signal Media 1 Million Articles set for NewsIR'16.
DOI: 10.6084/m9.figshare.2951263.v474
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2073628.v1
title: Cost of skeletal complications from bone metastases in six European countries

description: <b>Objective</b> Patients with bone metastases or lesions secondary to solid tumors or multiple myeloma often experience bone complications (skeletal-related events [SREs]—radiation to bone, pathologic fracture, surgery to bone, and spinal cord compression); however, recent data that can be used to assess the value of treatments to prevent SREs across European countries are limited. This study aimed to provide estimates of health resource utilization (HRU) and cost associated with all SRE types in Europe. HRU data were reported previously; cost data are reported herein. <b>Methods</b> Eligible patients from 49 centers across Austria (<i>n</i> = 57), the Czech Republic (<i>n</i> = 59), Finland (<i>n</i> = 60), Greece (<i>n</i> = 59), Portugal (<i>n</i> = 59), and Sweden (<i>n</i> = 62) had bone metastases or lesions secondary to breast, lung, or prostate cancer, or multiple myeloma, and ≥1 index SRE (a SRE preceded by a SRE-free period of ≥ 6.5 months). SRE-related costs were estimated from a payer perspective using health resource utilization data from patient charts (before and after the index SRE diagnosis). Country-specific unit costs were from 2010 and local currencies were converted to 2010 euros. <b>Results</b> The mean costs across countries were €7043, €5242, €11,101, and €11,509 per radiation to bone, pathologic fracture, surgery to bone, and spinal cord compression event, respectively. Purchasing power parity (PPP)-adjusted mean cost ratios were similar in most countries, with the exception of radiation to bone. <b>Limitations</b> The overall burden of SREs may have been under-estimated owing to home visits and evaluations outside the hospital setting not being reported here. <b>Conclusions</b> All SREs were associated with substantial costs. Variation in SRE-associated costs between countries was most likely driven by differences in treatment practices and unit costs.
DOI: 10.6084/m9.figshare.2074105.v2
title: Detecting Attention Dominating Moments Across Media Types - Tweet Stream

description: Tweets spanning September 2015. Parallel corpus to Signal Media 1 Million Articles set for NewsIR'16.
DOI: 10.6084/m9.figshare.2951263.v475
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2074105.v3
title: Detecting Attention Dominating Moments Across Media Types - Tweet Stream

description: Tweets spanning September 2015. Parallel corpus to Signal Media 1 Million Articles set for NewsIR'16.
DOI: 10.6084/m9.figshare.2074105.v5
title: Detecting Attention Dominating Moments Across Media Types - Tweet Stream

description: Tweets spanning September 2015. Parallel corpus to Signal Media 1 Million Articles set for NewsIR'16.
DOI: 10.6084/m9.figshare.2951263.v476
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2074105.v4
title: Detecting Attention Dominating Moments Across Media Types - Tweet Stream

description: Tweets spanning September 2015. Parallel corpus to Signal Media 1 Million Articles set for NewsIR'16.
DOI: 10.6084/m9.figshare.2073520
title: Tools for automated acoustic monitoring within the R package monitoR

description: The R package monitoR contains tools for managing an acoustic-monitoring program including survey metadata, template creation and manipulation, automated detection and results management. These tools are scalable for use with small projects as well as larger long-term projects and those with expansive spatial extents. Here, we describe typical workflow when using the tools in monitoR. Typical workflow utilizes a generic sequence of functions, with the option for either binary point matching or spectrogram cross-correlation detectors.
DOI: 10.6084/m9.figshare.2073520.v1
title: Tools for automated acoustic monitoring within the R package monitoR

description: The R package monitoR contains tools for managing an acoustic-monitoring program including survey metadata, template creation and manipulation, automated detection and results management. These tools are scalable for use with small projects as well as larger long-term projects and those with expansive spatial extents. Here, we describe typical workflow when using the tools in monitoR. Typical workflow utilizes a generic sequence of functions, with the option for either binary point matching or spectrogram cross-correlation detectors.
DOI: 10.6084/m9.figshare.2951263.v477
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2073523
title: Estimating repertoire size in a songbird: a comparison of three techniques

description: Many animals produce multiple types of breeding vocalizations that, together, constitute a vocal repertoire. In some species, the size of an individual’s repertoire is important because it correlates with brain size, territory size or social behaviour. Quantifying repertoire size is challenging because the long recordings needed to sample a repertoire comprehensively are difficult to obtain and analyse. The most basic quantification technique is simple enumeration, where one counts unique vocalization types until no new types are detected. Alternative techniques estimate repertoire size from subsamples, but these techniques are useful only if they are accurate. Using 12 years of acoustic data from a population of rufous-and-white wrens in Costa Rica, we used simple enumeration to measure the repertoire size for 40 males. We then compared these to the estimates generated by three estimation techniques: curve fitting, capture–recapture and a new technique based on the coupon collector’s problem. To understand how sampling effort affects the accuracy and precision of estimates, we applied each technique to six different-sized subsets of data per male. When averaged across subset sizes, the capture–recapture and coupon collector techniques showed the highest accuracy, whereas the curve fitting technique underestimated repertoire size. Precision (the average absolute difference between the estimated and true repertoire size) was significantly better for the capture–recapture technique than the coupon collector and curve fitting techniques. Both accuracy and precision improved as subset size increased. We conclude that capture–recapture is the best technique for estimating the sizes of small repertoires.
DOI: 10.6084/m9.figshare.2073523.v1
title: Estimating repertoire size in a songbird: a comparison of three techniques

description: Many animals produce multiple types of breeding vocalizations that, together, constitute a vocal repertoire. In some species, the size of an individual’s repertoire is important because it correlates with brain size, territory size or social behaviour. Quantifying repertoire size is challenging because the long recordings needed to sample a repertoire comprehensively are difficult to obtain and analyse. The most basic quantification technique is simple enumeration, where one counts unique vocalization types until no new types are detected. Alternative techniques estimate repertoire size from subsamples, but these techniques are useful only if they are accurate. Using 12 years of acoustic data from a population of rufous-and-white wrens in Costa Rica, we used simple enumeration to measure the repertoire size for 40 males. We then compared these to the estimates generated by three estimation techniques: curve fitting, capture–recapture and a new technique based on the coupon collector’s problem. To understand how sampling effort affects the accuracy and precision of estimates, we applied each technique to six different-sized subsets of data per male. When averaged across subset sizes, the capture–recapture and coupon collector techniques showed the highest accuracy, whereas the curve fitting technique underestimated repertoire size. Precision (the average absolute difference between the estimated and true repertoire size) was significantly better for the capture–recapture technique than the coupon collector and curve fitting techniques. Both accuracy and precision improved as subset size increased. We conclude that capture–recapture is the best technique for estimating the sizes of small repertoires.
DOI: 10.6084/m9.figshare.2073322
title: Excel tables and coordinates in xyz format for Carlos E. P. Bernardo and Pedro J. Silva (2016), Computational exploration of the reaction mechanism of the Cu+-catalysed synthesis of indoles from N-aryl enaminones Royal Society Open Science 3:150582

description: Excel tables and coordinates in xyz format for Carlos E. P. Bernardo and Pedro J. Silva (2016), Computational exploration of the reaction mechanism of the Cu+-catalysed synthesis of indoles from N-aryl enaminones Royal Society Open Science 3:150582<br><br>Original data (ca. 55 GB) are present in<br>http://dx.doi.org/10.6084/m9.figshare.1528305 http://dx.doi.org/10.6084/m9.figshare.1528383.<br>
DOI: 10.6084/m9.figshare.2073244
title: Phylogenetic relationships within the relict family Eomeropidae (Insecta, Mecoptera) based on the oldest fossil from the Early Jurassic (Sinemurian) of Dorset, southern England

description: The family Eomeropidae is a peculiar relict family of Mecoptera with a single extant species and, until now, eight known fossil species ranging in age from Middle Jurassic to Palaeogene. The oldest representative of the family, <i>Jurachorista bashkuevi</i> gen. et sp. nov., was collected from a coastal outcrop in Dorset, southern England, and is described herein. It extends the fossil record of Eomeropidae back to the Sinemurian (Early Jurassic; <i>c</i>. 196 Ma) and sheds new light on the phylogenetic relationships and past distribution of the family. Analysis of the wing venation of all known Eomeropidae indicates that <i>Notiothauma reedi</i>, the only living representative, is characterized by the most polymerized wings, while the oldest species, the newly described <i>Jurachorista bashkuevi</i>, has the most reduced venation within the family. Phylogenetic analysis based on wing venation produces a tree with two clades, illustrating the different taxonomic lines within the family. http://zoobank.org/urn:lsid:zoobank.org:pub:9CFA9133-6B64-4BF1-954C-C6A52D17F125
DOI: 10.6084/m9.figshare.2073322.v1
title: Excel tables and coordinates in xyz format for Carlos E. P. Bernardo and Pedro J. Silva (2016), Computational exploration of the reaction mechanism of the Cu+-catalysed synthesis of indoles from N-aryl enaminones Royal Society Open Science 3:150582

description: Excel tables and coordinates in xyz format for Carlos E. P. Bernardo and Pedro J. Silva (2016), Computational exploration of the reaction mechanism of the Cu+-catalysed synthesis of indoles from N-aryl enaminones Royal Society Open Science 3:150582<br><br>Original data (ca. 55 GB) are present in<br>http://dx.doi.org/10.6084/m9.figshare.1528305 http://dx.doi.org/10.6084/m9.figshare.1528383.<br>
DOI: 10.6084/m9.figshare.2073244.v1
title: Phylogenetic relationships within the relict family Eomeropidae (Insecta, Mecoptera) based on the oldest fossil from the Early Jurassic (Sinemurian) of Dorset, southern England

description: The family Eomeropidae is a peculiar relict family of Mecoptera with a single extant species and, until now, eight known fossil species ranging in age from Middle Jurassic to Palaeogene. The oldest representative of the family, <i>Jurachorista bashkuevi</i> gen. et sp. nov., was collected from a coastal outcrop in Dorset, southern England, and is described herein. It extends the fossil record of Eomeropidae back to the Sinemurian (Early Jurassic; <i>c</i>. 196 Ma) and sheds new light on the phylogenetic relationships and past distribution of the family. Analysis of the wing venation of all known Eomeropidae indicates that <i>Notiothauma reedi</i>, the only living representative, is characterized by the most polymerized wings, while the oldest species, the newly described <i>Jurachorista bashkuevi</i>, has the most reduced venation within the family. Phylogenetic analysis based on wing venation produces a tree with two clades, illustrating the different taxonomic lines within the family. http://zoobank.org/urn:lsid:zoobank.org:pub:9CFA9133-6B64-4BF1-954C-C6A52D17F125
DOI: 10.6084/m9.figshare.2951263.v478
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2073064
title: Supplementary Materials for: [Embedding complementary imaging data in laser scanning microscopy micrographs by reversible watermarking, Biomedical Optics Express, (2016)]

description: Supplementary Materials for: [Embedding complementary imaging data in laser scanning microscopy micrographs by reversible watermarking, Biomedical Optics Express, (2016)]<br><br>1. Supportive code: Matlab scripts for watermark embedding and extraction.<br><br>2. Supplementary data: Watermarking & compression results obtained for additional image sets.
DOI: 10.6084/m9.figshare.2951263.v479
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.