cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10162633
title: An integrated glaciological and meteorological dataset for Yulong Snow Mountain

description: Data Introduction
The dataset presented here offers a comprehensive insight into the dynamics of Yulong Snow Mountain (YSM), situated in a low latitude and high altitude region in the Northern Hemisphere (27.106°N, 100.205°E). The glaciers of YSM, characterized as temperate (warm) glaciers, exhibit a notable response to global environmental changes. Baishui River Glacier No. 1 (BGN1) stands as the largest and most renowned glacier on Yulong Snow Mountain. To elucidate the intricate relationship between glacier behavior and climatic variations on YSM, an alpine glacier and meteorological monitoring network has been meticulously established spanning an elevation range from 3046 m to 4700 m above sea level since 2006. This monitoring system encompasses a glacier observation field and four automatic weather stations (AWSs), collectively forming a long-term dataset.
This dataset encompasses glacier change, mass balance, and meteorological variables, including changes in glacier area and mass balance for YSM and BGN1. The data comprise temperature, relative humidity, wind speed, precipitation, and atmospheric pressure records at annual, monthly, and daily scales.
File Names and Variable Descriptions
YSM: Yulong Snow Mountain
BGN1: Baishui River Glacier No.1
GHZ: Ganhaizi
MNP: Maoniuping
UC: Upper Cableway
UG: Upper Glacier
Ta: air temperature (℃)
RH: relative humidity (%)
Ws: wind speed (m/s)
Ppt: precipitation (mm)
P: air pressure (hPa)
DOI: 10.5281/zenodo.10616536
title: An integrated glaciological and meteorological dataset for Yulong Snow Mountain

description: Data Introduction

The dataset presented here offers a comprehensive insight into the dynamics of Yulong Snow Mountain (YSM), situated in a low latitude and high altitude region in the Northern Hemisphere (27.106°N, 100.205°E). The glaciers of YSM, characterized as temperate (warm) glaciers, exhibit a notable response to global environmental changes. Baishui River Glacier No. 1 (BGR1) stands as the largest and most renowned glacier on Yulong Snow Mountain. 

To reveal the glacier and climate change situation on the YSM, an alpine glacier and meteorological monitoring network has been established between 3,046 m and 4,700 m a.s.l. since 2006. This monitoring system comprises a glacier observation field and four automatic weather stations (AWSs), generating a long-term series of glacier and meteorological datasets that are the closest to the equator in the Northern Hemisphere. The dataset offers fundamental information for research on glaciers, climate, and hydrology, as well as for data collection and processing in regions of low latitude and high altitude. Moreover, it holds significant theoretical importance for the coordinated comparison of glaciers and meteorology in global hotspots.

File Names and Variable Descriptions

YSM: Yulong Snow Mountain

BRG1: Baishui River Glacier No.1

GHZ: Ganhaizi

MNP: Maoniuping

UC: Upper Cableway

UG: Upper Glacier

Ta: air temperature (℃)

RH: relative humidity (%)

Ws: wind speed (m/s)

Ppt: precipitation (mm)

P: air pressure (hPa)
DOI: 10.6084/m9.figshare.14189613
title: Additional file 1 of Comprehensive circRNA-microRNA-mRNA network analysis revealed the novel regulatory mechanism of Trichosporon asahii infection

description: Additional file 1: Table S1. Primers used to assess select circRNAs, mRNAs and miRNAs by RT-qPCR. Table S2. Differentially expressed circRNAs. Table S3. Differentially expressed mRNAs. Table S4. Differentially expressed miRNAs. Table S5. The circRNA-miRNA-mRNA regulatory network.
DOI: 10.6084/m9.figshare.14189613.v1
title: Additional file 1 of Comprehensive circRNA-microRNA-mRNA network analysis revealed the novel regulatory mechanism of Trichosporon asahii infection

description: Additional file 1: Table S1. Primers used to assess select circRNAs, mRNAs and miRNAs by RT-qPCR. Table S2. Differentially expressed circRNAs. Table S3. Differentially expressed mRNAs. Table S4. Differentially expressed miRNAs. Table S5. The circRNA-miRNA-mRNA regulatory network.
DOI: 10.5281/zenodo.10619899
title: dataset related to the article "Circulating Small Extracellular Vesicles Reflect the Severity of Myocardial Damage in STEMI Patients"

description: This record contains raw data related to the article "Circulating Small Extracellular Vesicles Reflect the Severity of Myocardial Damage in STEMI Patients".

 

Circulating small extracellular vesicles (sEVs) contribute to inflammation, coagulation and vascular injury, and have great potential as diagnostic markers of disease. The ability of sEVs to reflect myocardial damage assessed by Cardiac Magnetic Resonance (CMR) in ST-segment elevation myocardial infarction (STEMI) is unknown. To fill this gap, plasma sEVs were isolated from 42 STEMI patients treated by primary percutaneous coronary intervention (pPCI) and evaluated by CMR between days 3 and 6. Nanoparticle tracking analysis showed that sEVs were greater in patients with anterior STEMI (p = 0.0001), with the culprit lesion located in LAD (p = 0.045), and in those who underwent late revascularization (p = 0.038). A smaller sEV size was observed in patients with a low myocardial salvage index (MSI, p = 0.014). Patients with microvascular obstruction (MVO) had smaller sEVs (p < 0.002) and lower expression of the platelet marker CD41–CD61 (p = 0.039). sEV size and CD41–CD61 expression were independent predictors of MVO/MSI (OR [95% CI]: 0.93 [0.87–0.98] and 0.04 [0–0.61], respectively). In conclusion, we provide evidence that the CD41–CD61 expression in sEVs reflects the CMR-assessed ischemic damage after STEMI. This finding paves the way for the development of a new strategy for the timely identification of high-risk patients and their treatment optimization.
DOI: 10.5281/zenodo.10619900
title: dataset related to the article "Circulating Small Extracellular Vesicles Reflect the Severity of Myocardial Damage in STEMI Patients"

description: This record contains raw data related to the article "Circulating Small Extracellular Vesicles Reflect the Severity of Myocardial Damage in STEMI Patients".

 

Circulating small extracellular vesicles (sEVs) contribute to inflammation, coagulation and vascular injury, and have great potential as diagnostic markers of disease. The ability of sEVs to reflect myocardial damage assessed by Cardiac Magnetic Resonance (CMR) in ST-segment elevation myocardial infarction (STEMI) is unknown. To fill this gap, plasma sEVs were isolated from 42 STEMI patients treated by primary percutaneous coronary intervention (pPCI) and evaluated by CMR between days 3 and 6. Nanoparticle tracking analysis showed that sEVs were greater in patients with anterior STEMI (p = 0.0001), with the culprit lesion located in LAD (p = 0.045), and in those who underwent late revascularization (p = 0.038). A smaller sEV size was observed in patients with a low myocardial salvage index (MSI, p = 0.014). Patients with microvascular obstruction (MVO) had smaller sEVs (p < 0.002) and lower expression of the platelet marker CD41–CD61 (p = 0.039). sEV size and CD41–CD61 expression were independent predictors of MVO/MSI (OR [95% CI]: 0.93 [0.87–0.98] and 0.04 [0–0.61], respectively). In conclusion, we provide evidence that the CD41–CD61 expression in sEVs reflects the CMR-assessed ischemic damage after STEMI. This finding paves the way for the development of a new strategy for the timely identification of high-risk patients and their treatment optimization.
DOI: 10.25345/c5f47h51h
title: MassIVE MSV000094023 - IP MS analysis of N4BP1 complex isolated from HEK293 cell line
title: IP-MS analysis of N4BP1 complex isolated from HEK293 cell line. N4BP1 RNase forms a complex with ECD4 and decapping proteins. We used three methods for extraction of proteins for MS analysis. Two IP-MS data sets were obtained against N4BP1 fused to the Fc tag (N4BP1Fc met - methanol precipitation; N4BP1Fc SP3 - extraction of proteins on SP3 column) and one data set against N4BP1 fused to GFP (N4BP1GFP SP3).
DOI: 10.6084/m9.figshare.24798774
title: Transcranial direct-current stimulation of the prefrontal cortex enhances working memory and suppresses pathological gamma power elevation in schizophrenia

description: This investigation examines the clinical benefits of prefrontal cortex transcranial direct current stimulation (tDCS) treatment of working memory (WM) dysfunction in chronic schizophrenia patients. 34 schizophrenia (SZ) patients were evaluated at baseline, and 29 patients were randomly assigned to either active tDCS intervention or sham tDCS intervention. tDCS intervention applied 10 consecutive sessions (20 minutes, 2 mA, two sessions a day) over 5 days. WM performance (<i>N</i> = 25), symptom severity (<i>N</i> = 29), and resting EEG (<i>N</i> = 17) were assessed from pre- to post-tDCS intervention. Additionally, symptom severity was noted over a 12-week follow-up period. WM accuracy significantly improved in the active tDCS group while WM accuracy in the sham tDCS group was unchanged. Significant symptom-severity reduction was sustained for one week after active tDCS intervention. Sustained resting gamma stability (RGS) was noted from baseline to post tDCS in the active-treatment group versus a significant elevation in pathological gamma power in the sham-tDCS group. Examining treatment effects on RGS in SZ could be critical in identifying effective novel treatment strategies that promote left-DLPFC excitability and enhance WM functioning. Further empirical support is warranted to support the clinical benefits over longer periods of time. ClinicalTrials.gov Identifier: NCT04637724. 337–19
DOI: 10.6084/m9.figshare.24798774.v1
title: Transcranial direct-current stimulation of the prefrontal cortex enhances working memory and suppresses pathological gamma power elevation in schizophrenia

description: This investigation examines the clinical benefits of prefrontal cortex transcranial direct current stimulation (tDCS) treatment of working memory (WM) dysfunction in chronic schizophrenia patients. 34 schizophrenia (SZ) patients were evaluated at baseline, and 29 patients were randomly assigned to either active tDCS intervention or sham tDCS intervention. tDCS intervention applied 10 consecutive sessions (20 minutes, 2 mA, two sessions a day) over 5 days. WM performance (<i>N</i> = 25), symptom severity (<i>N</i> = 29), and resting EEG (<i>N</i> = 17) were assessed from pre- to post-tDCS intervention. Additionally, symptom severity was noted over a 12-week follow-up period. WM accuracy significantly improved in the active tDCS group while WM accuracy in the sham tDCS group was unchanged. Significant symptom-severity reduction was sustained for one week after active tDCS intervention. Sustained resting gamma stability (RGS) was noted from baseline to post tDCS in the active-treatment group versus a significant elevation in pathological gamma power in the sham-tDCS group. Examining treatment effects on RGS in SZ could be critical in identifying effective novel treatment strategies that promote left-DLPFC excitability and enhance WM functioning. Further empirical support is warranted to support the clinical benefits over longer periods of time. ClinicalTrials.gov Identifier: NCT04637724. 337–19
DOI: 10.6084/m9.figshare.25037113
title: Hypomethylation at H19DMR in penile squamous cell carcinoma is not related to HPV infection

description: Penile squamous cell carcinoma (SCC) is a rare and aggressive tumour mainly related to lifestyle behaviour and human papillomavirus (HPV) infection. Environmentally induced loss of imprinting (LOI) at the H19 differentially methylated region (H19DMR) is associated with many cancers in the early events of tumorigenesis and may be involved in the pathogenesis of penile SCC. We sought to evaluate the DNA methylation pattern at H19DMR and its association with HPV infection in men with penile SCC by bisulfite sequencing (bis-seq). We observed an average methylation of 32.2% ± 11.6% at the H19DMR of penile SCC and did not observe an association between the p16<sup>INK4a</sup>+ (<i>p</i> = 0.59) and high-risk HPV+ (<i>p</i> = 0.338) markers with methylation level. The average methylation did not change according to HPV positive for p16<sup>INK4a</sup>+ or hrHPV+ (35.4% ± 10%) and negative for both markers (32.4% ± 10.1%) groups. As the region analysed has a binding site for the CTCF protein, the hypomethylation at the surrounding CpG sites might alter its insulator function. In addition, there was a positive correlation between intense polymorphonuclear cell infiltration and hypomethylation at H19DMR (<i>p</i> = 0.035). Here, we report that hypomethylation at H19DMR in penile SCC might contribute to tumour progression and aggressiveness regardless of HPV infection.
DOI: 10.6084/m9.figshare.25037113.v2
title: Hypomethylation at H19DMR in penile squamous cell carcinoma is not related to HPV infection

description: Penile squamous cell carcinoma (SCC) is a rare and aggressive tumour mainly related to lifestyle behaviour and human papillomavirus (HPV) infection. Environmentally induced loss of imprinting (LOI) at the H19 differentially methylated region (H19DMR) is associated with many cancers in the early events of tumorigenesis and may be involved in the pathogenesis of penile SCC. We sought to evaluate the DNA methylation pattern at H19DMR and its association with HPV infection in men with penile SCC by bisulfite sequencing (bis-seq). We observed an average methylation of 32.2% ± 11.6% at the H19DMR of penile SCC and did not observe an association between the p16<sup>INK4a</sup>+ (<i>p</i> = 0.59) and high-risk HPV+ (<i>p</i> = 0.338) markers with methylation level. The average methylation did not change according to HPV positive for p16<sup>INK4a</sup>+ or hrHPV+ (35.4% ± 10%) and negative for both markers (32.4% ± 10.1%) groups. As the region analysed has a binding site for the CTCF protein, the hypomethylation at the surrounding CpG sites might alter its insulator function. In addition, there was a positive correlation between intense polymorphonuclear cell infiltration and hypomethylation at H19DMR (<i>p</i> = 0.035). Here, we report that hypomethylation at H19DMR in penile SCC might contribute to tumour progression and aggressiveness regardless of HPV infection.
DOI: 10.6084/m9.figshare.25037113.v1
title: Hypomethylation at H19DMR in penile squamous cell carcinoma is not related to HPV infection

description: Penile squamous cell carcinoma (SCC) is a rare and aggressive tumour mainly related to lifestyle behaviour and human papillomavirus (HPV) infection. Environmentally induced loss of imprinting (LOI) at the H19 differentially methylated region (H19DMR) is associated with many cancers in the early events of tumorigenesis and may be involved in the pathogenesis of penile SCC. We sought to evaluate the DNA methylation pattern at H19DMR and its association with HPV infection in men with penile SCC by bisulfite sequencing (bis-seq). We observed an average methylation of 32.2% ± 11.6% at the H19DMR of penile SCC and did not observe an association between the p16<sup>INK4a</sup>+ (<i>p</i> = 0.59) and high-risk HPV+ (<i>p</i> = 0.338) markers with methylation level. The average methylation did not change according to HPV positive for p16<sup>INK4a</sup>+ or hrHPV+ (35.4% ± 10%) and negative for both markers (32.4% ± 10.1%) groups. As the region analysed has a binding site for the CTCF protein, the hypomethylation at the surrounding CpG sites might alter its insulator function. In addition, there was a positive correlation between intense polymorphonuclear cell infiltration and hypomethylation at H19DMR (<i>p</i> = 0.035). Here, we report that hypomethylation at H19DMR in penile SCC might contribute to tumour progression and aggressiveness regardless of HPV infection.
DOI: 10.34740/kaggle/dsv/7570507
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.5281/zenodo.10563984
title: Extracted features of TCGA datasets used in the Multi-head Attention-based Deep Multiple Instance Learning paper
DOI: 10.5281/zenodo.10563985
title: Extracted features of TCGA datasets used in the Multi-head Attention-based Deep Multiple Instance Learning paper
DOI: 10.5517/ccdc.csd.cc2bqwwv
title: CCDC 2166958: Experimental Crystal Structure Determination

description: Related Article: Yu Zhang|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2brrtp
title: CCDC 2167793: Experimental Crystal Structure Determination

description: Related Article: Shisi Tang, Jiayu Xu, Xu Liu, Yan Zhu|2022|Chem.-Eur.J.|28|e202201262|doi:10.1002/chem.202201262
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h6170
title: CCDC 2299711: Experimental Crystal Structure Determination

description: Related Article: lijz lijz|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h61b3
title: CCDC 2299714: Experimental Crystal Structure Determination

description: Related Article: Chen Xia|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h6l0b
title: CCDC 2300231: Experimental Crystal Structure Determination

description: Related Article: Hong Kyu Lee, Yasaswini Oruganti, Jonghyeon Lee, Seunghee Han, Jihan Kim, Dohyun Moon, Min Kim, Dae-Woon Lim, Hoi Ri Moon|2024|J.Mater.Chem.A|12|795|doi:10.1039/D3TA06197C
description: Related Article: Hong Kyu  Lee, Yasaswini Oruganti, Jonghyeon Lee, Seunghee Han, Jihan Kim, Dohyun Moon, Min Kim, Dae-Woon Lim, Hoi Ri Moon|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h6l1c
title: CCDC 2300232: Experimental Crystal Structure Determination

description: Related Article: Hong Kyu Lee, Yasaswini Oruganti, Jonghyeon Lee, Seunghee Han, Jihan Kim, Dohyun Moon, Min Kim, Dae-Woon Lim, Hoi Ri Moon|2024|J.Mater.Chem.A|12|795|doi:10.1039/D3TA06197C
description: Related Article: Hong Kyu  Lee, Yasaswini Oruganti, Jonghyeon Lee, Seunghee Han, Jihan Kim, Dohyun Moon, Min Kim, Dae-Woon Lim, Hoi Ri Moon|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h6l2d
title: CCDC 2300233: Experimental Crystal Structure Determination

description: Related Article: Hong Kyu Lee, Yasaswini Oruganti, Jonghyeon Lee, Seunghee Han, Jihan Kim, Dohyun Moon, Min Kim, Dae-Woon Lim, Hoi Ri Moon|2024|J.Mater.Chem.A|12|795|doi:10.1039/D3TA06197C
description: Related Article: Hong Kyu  Lee, Yasaswini Oruganti, Jonghyeon Lee, Seunghee Han, Jihan Kim, Dohyun Moon, Min Kim, Dae-Woon Lim, Hoi Ri Moon|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h6l3f
title: CCDC 2300234: Experimental Crystal Structure Determination

description: Related Article: Hong Kyu Lee, Yasaswini Oruganti, Jonghyeon Lee, Seunghee Han, Jihan Kim, Dohyun Moon, Min Kim, Dae-Woon Lim, Hoi Ri Moon|2024|J.Mater.Chem.A|12|795|doi:10.1039/D3TA06197C
description: Related Article: Hong Kyu  Lee, Yasaswini Oruganti, Jonghyeon Lee, Seunghee Han, Jihan Kim, Dohyun Moon, Min Kim, Dae-Woon Lim, Hoi Ri Moon|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h6nr4
title: CCDC 2300316: Experimental Crystal Structure Determination

description: Related Article: Yu Zhang|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h6ns5
title: CCDC 2300317: Experimental Crystal Structure Determination

description: Related Article: Yu Zhang|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h6nv7
title: CCDC 2300319: Experimental Crystal Structure Determination

description: Related Article: Yu Zhang|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h6nw8
title: CCDC 2300320: Experimental Crystal Structure Determination

description: Related Article: Yu Zhang|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.