cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3mq4631/4
title: Cisco unfiltered

description: Non-clone filtered (unfiltered) VCF file of cisco genotype data. VCF files were generated using stacks 2.46 with minimal filters (STACKS flags = -r 0.3, --min_maf 0.05). Data generated using the SbfI enzyme, methods outlined in Ali et al. (2016) prepared in the Larson Laboratory at the University of Wisconsin-Stevens Point and sequenced on a HiSeq 4000 (PE 150bp reads, 96 samples/lane) at the Michigan State Genomics Core Facility.
DOI: 10.5061/dryad.3mq4631/7
title: Walleye clone filtered

description: Clone filtered (filtered) VCF file of walleye genotype data. VCF files were generated using stacks 2.46 with minimal filters (STACKS flags = -r 0.3, --min_maf 0.05). Data generated using the SbfI enzyme, methods outlined in Ali et al. (2016) prepared in the Larson Laboratory at the University of Wisconsin-Stevens Point and sequenced on a HiSeq 4000 (PE 150bp reads, 192 samples/lane) at the Michigan State Genomics Core Facility.
DOI: 10.5061/dryad.3r0s513/1
title: Economic Trust in Children: Study 1

description: Trial data from Study 1 (Access versus No Access). Key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.3r0s513/2
title: Economic Trust in Children: Study 2

description: Trial data from Study 2 (Investment Game versus Dictator Game). Key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.3r0s513/3
title: Economic Trust in Children: Study 3

description: Trial data from Study 3 (Trustworthy Partner versus Untrustworthy Partner). Key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.4871d7b/1
title: Archive of data and code

description: An archive containing data and code for the paper: "Optimizing the genetic composition of a translocation population: incorporating constraints and conflicting objectives," by Jason Bragg, Peter Cuneo, Ahamad Sherieff and Maurizio Rossetto.
DOI: 10.5061/dryad.4nr63/3
title: DTT_Supplementary_Material

description: Supplementary results about illustrations of simulated diversity trajectories, over/underestimation of the three approaches, test of significativity, diversity trajectories and inferred rates of speciation and extinction for archaeobatrachian frogs and families subtenting diversification rate shifts
DOI: 10.5061/dryad.4nr63/4
title: Scripts

description: R scripts used for : - simulation of trees under the five diversification scenarios and computation of the global error (directory Simulation) - analysis of the frogs' phylogeny (directory Frogs_analysis)
DOI: 10.5061/dryad.556mh3j/1
title: Raw data for figure 1

description: The folder contains the force-distance curve used for figure 1.
DOI: 10.5061/dryad.556mh3j/2
title: Fig2_beadsize

description: The folder contains the force-distance curves used for figure 2 divided into subfolders for each beadsize.
DOI: 10.5061/dryad.556mh3j/3
title: Raw data for figure 3

description: The folder contains the force-distance curves used for figure 3 divided into subfolders for each thickness.
DOI: 10.5061/dryad.556mh3j/4
title: Raw data for figure 4_0.1µm/s

description: The folder contains the force-distance curves used for figure 4 (speed of 0.1 µm/s).
DOI: 10.5061/dryad.556mh3j/5
title: Raw data for figure 4_1µm/s

description: The folder contains the force-distance curves used for figure 4 (speed of 1 µm/s).
DOI: 10.5061/dryad.5hr3140/1
title: Data for Cyrtophora net house migration

description: These were used for the analyses on immigration and emigration of Cyrtophora citricola, published in Oikos, titled "Interacting maternal and spatial cues influence natal dispersal out of social groups."
DOI: 10.5061/dryad.5m4dn73/1
title: F. arfarkensis vcf file

description: VCF file for Ficus arfakensis samples used for calculating FST using VCFTools, and FineRADstructure (after conversion to TSV file according to custom script).
DOI: 10.5061/dryad.5m4dn73/2
title: Ceratosolen ex F. arfakensis

description: VCF file for Ceratosolen sp. samples from F. arfakensis used for calculating FST using VCFTools, and FineRADstructure (after conversion to TSV file according to custom script).
DOI: 10.5061/dryad.5m4dn73/3
title: wasfig

description: VCF file for Ficus wassa samples used for calculating FST using VCFTools, and FineRADstructure (after conversion to TSV file according to custom script).
DOI: 10.5061/dryad.5m4dn73/4
title: Kradibia ex F. wassa

description: VCF file for Kradibia spp. samples from Ficus wassa used for calculating FST using VCFTools, and FineRADstructure (after conversion to TSV file according to custom script).
DOI: 10.5061/dryad.5m4dn73/5
title: F. trichocerasa VCF file

description: VCF file for Ficus trichocerasa samples used for calculating FST using VCFTools, and FineRADstructure (after conversion to TSV file according to custom script).
DOI: 10.5061/dryad.5m4dn73/6
title: Ceratosolen ex F. trichocerasa

description: VCF file for Ceratosolen sp. samples from Ficus trichocerasa used for calculating FST using VCFTools, and FineRADstructure (after conversion to TSV file according to custom script).
DOI: 10.5061/dryad.8fb46m5/1
title: Apple genotype data

description: Genotype data in PLINK format. README file is included in zipped file.
DOI: 10.5061/dryad.9sj4hm8/8
title: Concatenated alignment (nexus)

description: Concatenated alignment in nexus format
DOI: 10.5061/dryad.9sj4hm8/9
title: Roche_probe_design_summary_files

description: Summary files provided by Roche in synthesising the probe design described in this manuscript
DOI: 10.5061/dryad.9tb689h/1
title: Code to reproduce figures

description: Jupyter notebook with Python code to produce the figures of the paper.
DOI: 10.5061/dryad.dn34vn2/1
title: RawData_Bhattacharya et al. Biol_Lett

description: This file contains all the raw data for the analyses described in the study. The data is provided across four sheets. An additional sheet titled 'Descriptions' provides more information about data on each sheet.
DOI: 10.5061/dryad.dn34vn2/2
title: Analyses_Codes_Bhattacharya et al. Biol_Lett

description: This .txt file contains the SAS code used to conduct the statistical analyses described in the manuscript. Annotations are provided for the Input data from the Raw Data file used for specific analyses.
DOI: 10.5061/dryad.m2579m0/1
title: Soil properties variables

description: This files contains following informations: "pH", "apparent_density_g.cm3", "%_total_porosity", "%_N_total", "%_organic_matter", "%_slope"
Further description of the sampling and variables is descripted in the Mat&Met section of the paper
DOI: 10.5061/dryad.m2579m0/2
title: Climatic Variables

description: This files contains following informations: "gravel.g", "%_WFPS", "soil_temperature_celciusdeg", "Nb_FrostDays", "mean_Growth_Season_Length", "Topographical_Wetness_Index", 
"Topographic_Position_Index", "altitude_m", "mean.solar.gain.W.m2.10e5", "variance_Growth_Season_Length". 
Further description of the sampling and variables is descripted in the Mat&Met section of the paper
DOI: 10.5061/dryad.m2579m0/3
title: OTUs from several metabarcoding markors

description: This data file contains raw OTUs from several metabarcoding markors (18S = all Eukaryots, AR = archea, BA = bacteria, FU = Fungi, GH = plants)
For each marker, two files are provided, the "motu" one corresponds to taxonomic assignations of each MOTU, the "mxp" one is the motu*plot matrix. These informations allow to reproduce the trophic groups and the code is provided below
DOI: 10.5061/dryad.m2579m0/4
title: Ecosystem functions

description: This files contains following informations: "ratio_C_N","leaching_NO3_µg_g","leaching_NH4_µg_g","N_NH4_produit_µgN_g_sol_j",
#"ratio_N_DON_N_NO3&N_NH4","ratio_N_TDN_N_total","total_green_biomass_g_m2","NDVI_mean","NDVI_variance"
Further description of the sampling and variables is descripted in the Mat&Met section of the paper
DOI: 10.5061/dryad.qk514d2.1
title: Data from: Sexual ornaments but not weapons trade off against testes size in primates
DOI: 10.5061/dryad.qk514d2.1/1.1
title: Primate dataset

description: Data on sexual weapons and ornaments, testes size, mating system and social groups of 103 primate species
DOI: 10.5061/dryad.qk514d2.1/2.1
title: References

description: Reference associated with the primate dataset
DOI: 10.5061/dryad.r14s582/1
title: Tree seedling measurement data from shadehouse experiment

description: Tree sending height and biomass data from a shadehouse experiment with 22 dry forest tree species. Soil treatment abbreviations indicate the locations where the soil was collected SE=Santa Elena, PV=Palo Verde. Nutrient level abbreviations: LN=low nutrient soil, HN=high nutrient soil.
DOI: 10.15159/phytop.28
title: Lake Peipsi 1982 (Phytoplankton samples)

description: Method: Up to 1988 the samples were preserved with formaldehyde (not neutralised), and lots of samples were spoiled: sample sediment was flaked, stuck together, or rusty. By this reason, a number of results of countings are not representative.
DOI: 10.15159/phytop.29
title: Lake Peipsi 1983 (Phytoplankton samples)

description: Method: Up to 1988 the samples were preserved with formaldehyde (not neutralised), and lots of samples were spoiled: sample sediment was flaked, stuck together, or rusty. By this reason, a number of results of countings are not representative.
DOI: 10.15159/phytop.30
title: Lake Peipsi 1984 (Phytoplankton samples)

description: Method: Up to 1988 the samples were preserved with formaldehyde (not neutralised), and lots of samples were spoiled: sample sediment was flaked, stuck together, or rusty. By this reason, a number of results of countings are not representative.
DOI: 10.15159/phytop.31
title: Lake Peipsi 1985 (Phytoplankton samples)

description: Method: Up to 1988 the samples were preserved with formaldehyde (not neutralised), and lots of samples were spoiled: sample sediment was flaked, stuck together, or rusty. By this reason, a number of results of countings are not representative.
DOI: 10.15159/phytop.32
title: Lake Peipsi 1986 (Phytoplankton samples)

description: Method: Up to 1988 the samples were preserved with formaldehyde (not neutralised), and lots of samples were spoiled: sample sediment was flaked, stuck together, or rusty. By this reason, a number of results of countings are not representative.
DOI: 10.15159/phytop.33
title: Lake Peipsi 1987 (Phytoplankton samples)

description: Method: Up to 1988 the samples were preserved with formaldehyde (not neutralised), and lots of samples were spoiled: sample sediment was flaked, stuck together, or rusty. By this reason, a number of results of countings are not representative.
DOI: 10.17632/bb2p899dwv.2
title: Dataset on Liquid Chromatography-Mass Spectrometry based Proteomics Profiling of the Up-regulated Hemolymph Proteins in Female Macrobrachium rosenbergii, upon Physical-stress Associated with Eyestalk Ablation

description: This data informs about the profile of up-regulated hemolymph proteins in Macrobrachium rosenbergii subjected to physical-stress as induced by eyestalk ablation. Hemolymph protein of normal (unablated) and stress (ablated) animals were collected from premolt during reproductive and non-reproductive stages.The data includes protein ID, protein group, percentage coverage, number of peptides, number of unique peptides, species that shares similar peptide sequence similarity and average mass. The data is highly valuable for data repository of the M. rosenbergii proteome for comparative and biochemical studies as well as understanding protein-protein interaction network governing the stress-factor upon eyestalk ablation during molting (growth) and reproductive development.
DOI: 10.17632/bh4jncjygc.1
title: Data for: The stability and in vitro digestion of curcumin emulsions containing Konjac glucomann

description: The effect of KGM concentrations on the particle size distributions of WPI-stabilized curcumin emulsions, and the particle size distributions of curcumin emulsions with /without KGM undergoing the various enviromental changes including pH, salt concentrations and thermal process. these results reflected that the effect of KGM on the stability of WPI-stabilized curcumin emulsions.
DOI: 10.17632/d8pcffh646.1
title: Data for: Identification of inhalable rutile and polycyclic aromatic hydrocarbons (PAHs) nanoparticles in the atmospheric dust.

description: Analysis of road dust suggests that high rutile concentrations are deposited on the street and might be circulated in the air by wind, vehicle and pedestrian traffic. Atmospheric samples collected at pedestrian level are composed of a heterogeneous sample of micro and nanoparticles with a higher size range from 40 nm to 60 nm.
DOI: 10.17632/fvmvnff8tf.1
title: Data for: A Computational Model for Understanding the Oligomerization Mechanisms of TNF Receptor Superfamily

description: The simulation results from the kinetic Monte-Carlo Method
DOI: 10.17632/t5x3gpmrgj.1
title: Data for: A Computational Model for Understanding the Oligomerization Mechanisms of TNF Receptor Superfamily
DOI: 10.17632/wtb83vmtjw.1
title: Data for: Quantification of coagulation factor VIII in human plasma with liquid chromatography tandem mass spectrometry using a selective sample purification with camelid nanobodies

description: Raw LC-MS/MS results obtained from optimization experiments
DOI: 10.5061/dryad.3mq4631/8
title: Walleye unfiltered

description: Non-clone filtered (unfiltered) VCF file of walleye genotype data. Clone filtered (filtered) VCF file of walleye genotype data. VCF files were generated using stacks 2.46 with minimal filters (STACKS flags = -r 0.3, --min_maf 0.05). Data generated using the SbfI enzyme, methods outlined in Ali et al. (2016) prepared in the Larson Laboratory at the University of Wisconsin-Stevens Point and sequenced on a HiSeq 4000 (PE 150bp reads, 192 samples/lane) at the Michigan State Genomics Core Facility.
DOI: 10.5061/dryad.4c44hq3/1
title: DryadMetaData

description: Metadata
DOI: 10.5061/dryad.4c44hq3/2
title: DryadDataLindenmayerEtal2019

description: Number of detections (out of 6) of each bird species and covariates
DOI: 10.5061/dryad.4c44hq3/3
title: DryadDataSpeciesTraitsLindenmayerEtal2019

description: Bird species traits
DOI: 10.5061/dryad.4gg39k6/1
title: Cybertype dataset_Temnothorax elmenshawfi_CASENT0790240

description: Cybertype dataset for Temnothorax elmenshawyi (CASENT0790240) paratype worker: complete micro-CT scanning raw dataset (in DICOM format - 964 slices), 3D surface (in ply format), 3D rotation video (in mp4 format), 3D model volume rendering snapshots (in tiff format), and stacked colour photos (in tiff format).
DOI: 10.5061/dryad.556mh3j/10
title: Raw data for figure 4_100µm/s

description: The folder contains the force-distance curves used for figure 4 (speed of 100 µm/s).
DOI: 10.5061/dryad.556mh3j/11
title: Raw data for figure 5

description: The data used for figure 5 is the same as for figure 4 (speed of 1 µm/s).
DOI: 10.5061/dryad.556mh3j/12
title: Data used for the supporting information

description: The folder contains the data used for the supporting information including the Matlab algorithms. The folder is divided into subfolders for each SI figure.
DOI: 10.5061/dryad.556mh3j/6
title: Raw data for figure 4_5µm/s

description: The folder contains the force-distance curves used for figure 4 (speed of 5 µm/s).
DOI: 10.5061/dryad.556mh3j/7
title: Raw data for figure 4_10µm/s

description: The folder contains the force-distance curves used for figure 4 (speed of 10 µm/s).
DOI: 10.5061/dryad.556mh3j/8
title: Raw data for figure 4_20µm/s

description: The folder contains the force-distance curves used for figure 4 (speed of 20 µm/s).
DOI: 10.5061/dryad.556mh3j/9
title: Raw data for figure 4_40µm/s

description: The folder contains the force-distance curves used for figure 4 (speed of 40 µm/s).
DOI: 10.5061/dryad.5c5372c/2
title: RSPB-2019-1466_Data
DOI: 10.5061/dryad.5m4dn73/10
title: Ceratosolen wasps FASTA alignment

description: Ceratosolen wasps alignment used for RAxML phylogenies
DOI: 10.5061/dryad.5m4dn73/11
title: Ceratosolen ex F. arfakensis COI alignment

description: COI sequences from Ceratosolen wasps from F. arfakensis for jMOTU analysis
DOI: 10.5061/dryad.5m4dn73/12
title: Ceratosolen ex F. trichocerasa COI alignment

description: COI sequences from Ceratosolen wasps from F. trichocerasa for jMOTU analysis
DOI: 10.5061/dryad.5m4dn73/13
title: Kradibia ex F. wassa COI alignment

description: COI sequences from Kradibia wasps from F. wassa for jMOTU analysis
DOI: 10.5061/dryad.5m4dn73/7
title: F. itoana complex VCF file

description: VCF file for Ficus itoana complex samples used for calculating FST using VCFTools, and FineRADstructure (after conversion to TSV file according to custom script).
DOI: 10.5061/dryad.5m4dn73/8
title: Ceratosolen ex F. itoana complex

description: VCF file for Ceratosolen sp.  samples from the F. itoana complex used for calculating FST using VCFTools, and FineRADstructure (after conversion to TSV file according to custom script).
DOI: 10.5061/dryad.5m4dn73/9
title: Kradibia wasps FASTA alignment

description: Kradibia wasps alignment used for RAxML phylogenies
DOI: 10.5061/dryad.6045tk0/1
title: V6_106.009

description: AFM image of virus particles partially dipped in the receptor layer on Figure 7a
DOI: 10.5061/dryad.6045tk0/2
title: V6_106.010

description: AFM image of virus particles removed by force and applied by AFM cantilever on Figure 7b
DOI: 10.5061/dryad.gb8h60p/1
title: Supplement 3 - fluorescent microscopy images

description: All the fluorescent microscopy images used to assess information transfer rates in experiment 2.
DOI: 10.5061/dryad.gb8h60p/3
title: S2-Complete analysis, data, and Rproject

description: This zipped file contains all the necessary files for a complete reproduction of the statistical analysis.
DOI: 10.5061/dryad.j67f87m/1
title: S1 - 3D model of MSNM V5801

description: Specimen MSNM V5801 comes from the Sakaraha Formation (Isalo IIIb subunit), which is Bathonian in age (Middle Jurassic). It has been collected in 2001, in association with MSNM V5802 and V5803, near the Tsinjorano village school (Majunga Province, NW Madagascar). It was lying near two theropod teeth and two fragmentary sauropod long bones, almost completely powdered by weathering (G. Pasini, pers. com. 2016). This specimen is attributed to morphotype J2 and included in taxon A, which represents a taxon more derived than Mamenchisauridae but not belonging to Titanosauriformes and Diplodocoidea. This 3D model has been generated with photogrammetry processing and merging 34 photos together; an object with about 180000 faces has been obtained. Description in the main text.
DOI: 10.5061/dryad.j67f87m/2
title: S2 - 3D model of MSNM V6216

description: Specimen MSNM V6216 comes from the Sakaraha Formation (Isalo IIIb subunit), which is Bathonian in age (Middle Jurassic). It has been collected in 2003, isolated from other fossils. A peculiar character of this specimen is the twisting of the crown, where it approaches the crown tip. This character has been considered to be a synapomorphy of Brachiosauridae (D’Emic 2012). It is attributed to morphotype J3 and included in taxon B, which represents a basal Brachiosauridae or basal Titanosauriformes. This 3D model has been generated with photogrammetry processing and merging 71 photos together, divided in two groups, to obtain an object with about 795000 faces. Description in the main text.
DOI: 10.5061/dryad.j67f87m/3
title: S3 - 3D model of MSNM V6217

description: Specimen MSNM V6217 comes from the Sakaraha Formation (Isalo IIIb subunit), which is Bathonian in age (Middle Jurassic). It has been collected in 2003, isolated from other fossils. It is distinguished by a unique elongate, spindle–like shape, and by a transverse section that remains subcircular up to one-third of the crown height. This specimen is the only representative of morphotype J8, taxon D, which should belong to Diplodocoidea (Dicraeosauridae?) or Titanosauria. MSNM V6217 might represent a new taxon, maybe a basal member of Diplodocoidea, and the oldest fossil record of the clade in Africa. This 3D model has been generated with photogrammetry processing and merging 50 photos together, divided in two groups, to obtain an object with about 1000000 faces. Description in the main text.
DOI: 10.5061/dryad.js18230/1
title: Evolutionarily stable metacommunities for resource-supply-landscape pair 1

description: First of the three files containing the 9 landscape pairs used in the study. Please refer to the readme for detailed information.
DOI: 10.5061/dryad.js18230/2
title: Evolutionarily stable metacommunities for resource-supply-landscape pair 2

description: See the attached readme.txt for more information.
DOI: 10.5061/dryad.js18230/3
title: Evolutionarily stable metacommunities for resource-supply-landscape pair 3

description: See attached readme.txt for more information.
DOI: 10.5061/dryad.js18230/4
title: plot_spatial_distributions.m

description: Matlab-script for plotting the spatial distributions of the evolutionarily stable resource-competition communities
DOI: 10.5061/dryad.js18230/5
title: poly_interp_per_2d.m

description: Helper-script for the plotting script.
DOI: 10.5061/dryad.js18230/6
title: README

description: Description of data package contents.
DOI: 10.5061/dryad.m2579m0/5
title: Main script to process, format and analyse environmental, multi-trophic and ecosystem functions data

description: This script will allow the user to reproduce the main figures and analyses of "Multi-trophic β-diversity mediates the effect of environmental gradients on the turnover of multiple ecosystem functions". In particular, it built environmental and ecosystem functioning turnover matrices, built trophic groups and computes multiple assets of multi-trophic ß-diversity and computes multiple path analyses using lavaan. The associated script of functions is necessary to run this script.
DOI: 10.5061/dryad.m2579m0/6
title: Functions of the main script

description: This script holds the necessary functions to run the main script and reproduce data formatting & path analyses of "Multi-trophic β-diversity mediates the effect of environmental gradients on the turnover of multiple ecosystem functions"
DOI: 10.5061/dryad.nn96ps3/1
title: Appendix 1_Final

description: Data file compiled for the revision and metanalyses. For each study, the literature reference, species, family, life form, ecoregion, number of populations, traits and test environments are shown. Number of traits that show significant PxE are also shown.
DOI: 10.5061/dryad.t690j3p/1
title: Stojanova_et_al_F.rubra_heritability_JEB_2019

description: The data contains Loiselle's kinship matrices estimated from 5 microsatellite markers, and phenotypic traits measured on plants from a maternal half-sib design, grown in two growth chambers. All variable names are described in the ReadMe worksheet. For detailed description of the plant material and study design see Stojanova et al, "Evolutionary potential of a clonal grass under climate change" published in the Journal of Evolutionary Biology
DOI: 10.15159/phytop.34
title: Lake Peipsi 1988 (Phytoplankton samples)

description: Method: Up to 1988 the samples were preserved with formaldehyde (not neutralised), and lots of samples were spoiled: sample sediment was flaked, stuck together, or rusty. By this reason, a number of results of countings are not representative.
DOI: 10.15159/phytop.35
title: Lake Peipsi 1989 (Phytoplankton samples)

description: Methods: Samples were in most cases concentrated by precipitation up to 15 ml. Count was made on striped microscope slides within volume 0,1 ml. Microscopes: MBI-3 (magnification 15x20 and 15x40) and Jenaval (7x40). Macroscopic colonies of Gloeotrichia echinulata were counted visually in 500 ml measuring cylinder.