cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14719948
title: anisamna/AmbiTRUS_4_Ambiguity: Raw materials of the research paper titled "The Ambitrus Framework for Identifying Potential Ambiguity in User Stories."

description: This repository contains the appendices of the research paper titled "The Ambitrus Framework for Identifying Potential Ambiguity in User Stories." The appendices include materials from the experiment and respondent responses used to identify potential ambiguity in user stories.

The AmbiTRUS framework is designed to analyze potential ambiguity in user stories by examining issues across different linguistic levels and evaluating the potential impact on software if these issues remain unidentified.

The preprint version of the paper can be accessed here, offering detailed insights into the framework and its evaluation.

This repository is particularly useful for researchers in software engineering, requirements engineering practitioners, and students interested in addressing ambiguity in user stories to improve software quality. For usage instructions, please refer to the README file.
DOI: 10.23719/1522871
title: Metabolomic Investigations of the Temporal Effects of Exposure to Pharmaceuticals and 4 Personal Care Products and their Mixture in the Eastern Oyster (Crassostrea virginica)

description: The eastern oyster (Crassostrea virginica) supports a large aquaculture industry and is a keystone species along the Atlantic seaboard. Native oysters are routinely exposed to a complex mixture of contaminants that increasingly includes pharmaceuticals and personal care products (PPCPs). Unfortunately, the biological effects of chemical mixtures on oysters are poorly understood. Untargeted GC-MS metabolomics was utilized to quantify the response of oysters exposed to fluoxetine, N,N-diethyl-meta-toluamide (DEET), 17α-ethynylestradiol (EE2), diphenhydramine and their mixture. Oysters were exposed to 1 µg/L of each chemical or mixture for ten days, followed by an eight-day depuration period. Adductor muscle (n = 14/treatment) was sampled at days 0, 1, 5, 10 and 18. Trajectory analysis illustrated that metabolic effects and class separation of the treatments varied at each time point, and that overall, the oysters were only able to partially recover from these exposures post-depuration. Altered metabolites were associated with cellular energetics (i.e. Krebs cycle intermediates), as well as amino acid metabolism and the urea cycle. Exposure to these PPCPs also affected metabolic pathways associated with anaerobic metabolism, osmotic stress and oxidative stress, in addition to the physiological effects from each chemical’s postulated mechanism of action. Following depuration, there were fewer metabolites altered, but none of the treatments returned to their initial control values, indicating that metabolic disruptions were long-lasting. Interestingly, the mixture did not directly cluster with individual treatments in the scores plot from partial least squares discriminant analysis and many of its affected metabolic pathways were not well-predicted from the individual treatments. This research highlights the utility of untargeted metabolomics in developing exposure biomarkers for compounds with differing modes of action in bivalves.
DOI: 10.17632/kjhfp2rsm6.2
title: Interannual variability in phytoplankton size class distribution derived from pigment analysis in the central Arabian Sea (summer monsoon)

description: The present data set contains some of the key physical (temperature, dissolved oxygen), biological (phytoplankton pigment), and chemical (nutrients) parameters from the upper ocean (mostly euphotic layers surface-120 m) of the central Arabian Sea (64° E; 11° N–21° N) collected during the summer monsoon (August 2017 and 2018) onboard R. V. Sindhu Sadhana. In this study, we have described the results from two cruises along the central Arabian Sea that experiences open ocean upwelling in its northern flank and downwelling in the south during the summer monsoon. Atmospheric forcing was found to directly control the hydrography, nutrient availability, and phytoplankton size class distribution across the central Arabian Sea with a distinct interannual difference. The phytoplankton size classes (micro, nano, and picophytoplankton) constructed using the marker pigment data showed prominent spatial and interannual variability that was consistent with the microscopic study.
DOI: 10.17632/kjhfp2rsm6.1
title: Interannual variability in phytoplankton size class distribution derived from pigment analysis in the central Arabian Sea (summer monsoon)

description: The present data set contains some of the key physical (temperature, dissolved oxygen), biological (phytoplankton pigment), and chemical (nutrients) parameters from the upper ocean (mostly euphotic layers surface-120 m) of the central Arabian Sea (64° E; 11° N–21° N) collected during the summer monsoon (August 2017 and 2018) onboard R. V. Sindhu Sadhana. In this study, we have described the results from two cruises along the central Arabian Sea that experiences open ocean upwelling in its northern flank and downwelling in the south during the summer monsoon. Atmospheric forcing was found to directly control the hydrography, nutrient availability, and phytoplankton size class distribution across the central Arabian Sea with a distinct interannual difference. The phytoplankton size classes (micro, nano, and picophytoplankton) constructed using the marker pigment data showed prominent spatial and interannual variability that was consistent with the microscopic study.
DOI: 10.17632/mr5gk53gkz.1
title: Conventional agriculture interferes with sex communication in a wild bee with negative impacts on population size

description: The current dataset was generate from field monitoring and lab experiments. The first sheet was used to generate the results related to nesting activities and the number of brood cells produced in areas with varying levels of organic farming management. The following sheets are related to body traits (size and cuticular hydrocarbons) of females and males from different farming management system. The last two sheets relates to mating behavior experiments 1) with animals originally from different farming management sites and 2) with the use of synthetics.
DOI: 10.17632/ytg69cxxsx.1
title: AI in Special Education: Providing Customized Learning Solutions for Diverse Learners

description: This research explores the potential of Artificial Intelligence (AI) to transform special education by providing tailored learning experiences for students with diverse needs. Special education often requires highly individualized instruction, which can be challenging for teachers to deliver at scale. AI technologies, including adaptive learning platforms, natural language processing, and emotion recognition, offer promising solutions by personalizing educational content to match each learner’s unique cognitive and emotional profile.

The study examines various AI-driven tools designed to assist students with learning disabilities, autism, speech impairments, and other challenges. These tools adapt in real-time to each student’s pace, preferences, and responses, offering customized feedback, exercises, and reinforcement. By analyzing student interactions, AI systems can identify specific areas where a learner struggles, recommend targeted interventions, and monitor progress over time.

This research also addresses the ethical considerations and practical challenges in deploying AI for special education. Topics include data privacy, the need for unbiased algorithms, and the role of teachers in guiding AI interactions. Ultimately, this study aims to provide insights into how AI can bridge learning gaps, foster independence, and improve educational outcomes for diverse learners in inclusive environments.
DOI: 10.23719/1531949
title: The Bi-Directional Lung Brain-Axis of Amyloid β Pathology: Ozone Dysregulates the Peri- Plaque Microenvironment

description: These data pertains to research results from studies examining ozone effects on the mechanism of amyloid plaque formation in mouse brain.
DOI: 10.17632/78ytf9yvft.1
title: Anonymous Student Academic Records in Some Subjects for the 2nd Semester of the Academic Year 2017/2018

description: Anonymous Student Academic Records for the 2nd Semester of the Academic Year 2017/2018: 
The dataset encompasses critical attributes concerning academic and demographic information. Key attributes in the dataset include: ID, Section, Gender, Age, Electricity score, Score in Mathematics Analysis, Score in Algebra, Score in the French Language
DOI: 10.17632/6tyrxjtgrr.1
title: database of: First detection of CTX-M-65 ESBL gene in Morocco

description: The aim of the study was to determine the occurrence of genes encoding antibacterial resistance in Escherichia coli isolates isolated from poultry products.
This database contains the results of the molecular analysis of two resistant strains , the 2 isolates were positive to the test of synergy between the clavulanic acid and the third generations of cephalosporin (C3G) and showed a high level of resistance to penicillins. The first isolate to third generations of cephalosporin, aztreonam, and fluoroquinolones. 
Whole-genome screening evidenced the presence of ESBL genes, namely, blaCTX-M-65, blaEC-15, blaTEM-1, quinolones resistance genes gyrA_S83L, parC_S80I, in addition to other resistance genes. The virulence profile did not show the presence of neither of the shiga toxin genes stx1 and sxt2; nevertheless, other virulence factors were detected such as CvaC (colicin V) and iroBCDEN genes.
DOI: 10.17632/cg7jzjd88r.2
title: Data on aquatic macroinvertebrates and adult Odonata in the Netherlands in 2023 as recorded by volunteers from 'Waterdiertjes.nl'

description: Supporting data sets to the paper: "Link of dragonflies and damselflies with the aquatic environment is differently expressed in adult and larval stages" which has been published in 'Environmental and Sustainability Indicators' https://doi.org/10.1016/j.indic.2025.100621.

The Dutch citizen science initiative ‘Waterdiertjes.nl’ focuses on assessing biological water quality using macroinvertebrates. In 2023, a campaign was launched in which volunteers were encouraged to record flying Odonata while collecting the aquatic macroinvertebrates. In more than 360 sampling events, flying Odonata were indeed also recorded.
The excel file (Data_MaFa_Odonata_Environment.xlsx) contains the recordings of the aquatic macroinvertebrates (Tab Macroinvertebrates) as done by the volunteers of 'Waterdiertjes.nl' , provides the sightings of the flying dragonfly and damselfly (Tab Flying_Odonata), as well as some key characteristics of the sampled water systems (dimensions, shape, flow, land-use), presence of fish and presence of vegetation (Tab Additional_data).
DOI: 10.17632/53j3vrhddj.1
title: Opposing regulation of the STING pathway in hepatic stellate cells by NBR1 and p62 determines the progression of hepatocellular carcinoma

description: Hepatocellular carcinoma (HCC) emerges from chronic inflammation to which activation of hepatic stellate cells (HSCs) contributes by shaping a pro-tumorigenic microenvironment. Key to this process is p62, whose inactivation leads to enhanced hepatocarcinogenesis. Here, we show that while p62 positively regulates STING ubiquitination by TRIM32 by displacing NBR1, which results in the activation of the interferon (IFN) cascade, NBR1 prevents TRIM32 interaction with and the activation of STING, leading to impaired IFN synthesis. NBR1 also antagonizes STING function by promoting its trafficking from the Golgi to the endosome-lysosomal degradative cascade independent of autophagy. Importantly, NBR1 deletion completely reverts the tumor-promoting function of p62-deficient HSCs. The upregulation of the STING-IFN pathway by NBR1 deficiency enhances the anti-tumor response mediated by CD8+ T cells. These results identify NBR1 as a synthetic vulnerability of p62-deficiency in HSCs. NBR1 loss, by promoting the STING/IFN pathway, boosts anti-tumor CD8+ T cell responses to restrain HCC.
Nbr1 knock-out and wild-type hepatic stellate cells were profiled in three biological replicates under normal conditions.
DOI: 10.17632/3c22fp7w6w.1
title: Data for "Tourist Preferences for tourism development: A Choice Experiment of destinations and bus characteristics in Guatemala"

description: Survey data was collected in December 2023 and January 2024 by three trained interviewers in the town of Panajachel, the main visitor hub of Lake Atitlán. Interviewers were instructed to approach tourists in public areas (i.e. the city’s street mall, piers where visitors wait for boat trips, and the lake shore) and conducted computer-assisted personal interviews with those who accepted to participate in our study. Data was collected based on a survey that was carefully calibrated by the research team and subject to a pilot prior to launch to determine if questions were clear, the degree of respondent burnout, etc.
DOI: 10.5281/zenodo.13551821
title: Now or Never? Global Review of Reactive and Near Real-Time Conservation Actions For Cetaceans

description: Table S1: Information on resulting publications (n = 64) reviewed in this study.
DOI: 10.5281/zenodo.12749427
title: Elucidation of the activity and pH stability limits of polyoxometalate-intercalated layered double hydroxide nanocomposites towards water oxidation catalysis
DOI: 10.5281/zenodo.12800235
title: Modélisation-Platform Enhaning Perfomances within communities of practice

description: Feuille de description de la démarche de cocréation d'un projet sur Platform
DOI: 10.5281/zenodo.14474883
title: Data and Code for Patterns and drivers of plant C:N:P stoichiometry across a 3000 km aridity gradient
DOI: 10.5281/zenodo.13366843
title: Description of Mont-Vert hillslope database: measured properties along soil cores and associated metadata

description: This dataset includes data and metadata of twenty soil cores collected in Mont-Vert banana plantation (Le Robert, Martinique, France) in February 2023. These data were collected in order to study the chlordecone (an organochlorine insecticide) redistribution along a cultivated hillslope. To this end, radiocesium activities (artificial radionuclide) and chlordecone concentrations were measured in soil core subsamples (5-cm increments).
DOI: 10.5281/zenodo.14509452
title: Observation of quantum thermalization restricted to Hilbert space fragments and Z_{2k} scars

description: Data and code for the article "Observation of quantum thermalization restricted to Hilbert space fragments and Z_{2k} scars".
DOI: 10.5281/zenodo.13134000
title: Boosting serotonin synthesis is not sufficient to improve motor coordination of Mecp2 heterozygous mouse model of Rett syndrome

description: Excel file related to the article
description: dataset related to Boosting serotonin synthesis is not sufficient to improve motor 1 coordination of Mecp2 heterozygous mouse model of Rett 2 syndrome
DOI: 10.5281/zenodo.13984579
title: Study of acute lethality, teratogenesis, and metabolomic changes of N-(2'-Hydroxyphenyl)-2-Propylpentanamide (HO-AAVPA) on Artemia franciscana
DOI: 10.5281/zenodo.13961112
title: Force-mediated microtubule stabilization induces global nuclear remodelling in neurons

description: Data and Metadata associated with a publication
DOI: 10.5281/zenodo.14008458
title: Subclonal mutational load predicts survival and response to immunotherapy in cancers with low to moderate TMB
title: CliPP Data Results (CliPPSim4k, TCGA, PCAWG)

description: Here we provide the downloadable links of subclonal reconstruction results by CliPP, on both TCGA and PCAWG datasets. We also provide the source of our in-house simulation data (CliPPSim4k), along with a comparison between CliPP and PhyloWGS.

For more detailed information about the data, please refer to our paper: https://www.biorxiv.org/content/10.1101/2024.07.03.601939v1 or visit our web app: https://bioinformatics.mdanderson.org/apps/CliPP/
DOI: 10.5281/zenodo.12635655
title: Neonicotinoid pesticides affect developing neurons in experi-mental mouse models and in human induced pluripotent stem cell (iPSC)-derived neural cultures and organoids
DOI: 10.5281/zenodo.13861713
title: Data for: Impediments and proposed solutions for Southeast Asian insect conservation

description: Five curated datasets used in the manuscript "Impediments and proposed solutions for Southeast Asian insect conservation": (1) Insect occurrence, (2) primary literature, (3) authorship, (4) funding, and (5) social media data. Please refer to the metadata tab and manuscript for information on each dataset.
DOI: 10.5281/zenodo.14006538
title: SERENA EJPSOIL PT SOCLOSS SOC 0-20 cm
title: SERENA EJPSOIL PT SOCLOSS SOC 0-20 cm

description: The internal EJP SOIL project SERENA contributed to evaluating soil multifunctionality, aiming to provide assessment tools for land planning and soil policies at different scales. By co-working with relevant stakeholders, the project provided co-developed indicators and associated cookbooks to assess and map them, to report both on soil degradation, soil-based ecosystem services and their bundles, under actual conditions and for climate and land-use changes, at the regional, national, and European scales.

The dataset corresponds to a map of Soil Organic Carbon (SOC) concentration (g kg-1) in Portugal. The map of soil organic carbon, as an indicator of SOC loss threat, was based on ordinary kriging and has a spatial resolution of 50 m. Soil organic carbon (0-0.20 m) data from LUCAS 2018 TOPSOIL data - ESDAC - European Commission database, which is freely available (https://esdac.jrc.ec.europa.eu/content/lucas-2018-topsoil-data).
description: The data are derived from the calculation of indicators based on a standard methodology established as part of the EJP Soil SERENA programme. Please keep in mind that:

- It is the result of a modelling exercise and does not necessarily reflect reality.

- Despite the efforts made to provide reliable data, the results may contain inconsistencies, depending in particular on the raw data available and the level of accuracy of the techniques chosen and their prior knowledge.

- It is necessary to consider how the results have been obtained in order to decide on their relevance in relation to the intended purpose of reuse.

- These results are interesting from a scientific point of view, but their use for environmental management and policy issues should be done keeping the previous aspects in mind and complementing when necessary the provided results with the best available data.

- Finally, it is the responsibility of the users of this information to decide whether it is appropriate to use these data and whether the data meets their needs. The authors of this resource can in no way be held responsible for the results obtained from the use of this data.
DOI: 10.5281/zenodo.13856111
title: Tiger occupancy

description: These datasets were used in "Tiger recovery amidst people and poverty" (Jhala et al. in review) for modelling multi-season tiger occupancy and their co-occurrence with other fauna. The dataset named "occupancy" includes variables on occupancy survey and site characteristics at 100 km2 grid scale for every four years from 2006 to 2018. There were in total four sampling cycles between this period. Occupancy surveys are provided as replicates with tiger presence and replicates with tiger absence per grid cell, per sampling year. Site covariates are provided as standardized values per grid cell. For details on site covariates please refer to Jhala et al. (in review).  Details on the methodology, data source, and resolution can be found in the peer-reviewed study (Link to study on publication).
DOI: 10.5281/zenodo.14735689
title: K2-18 Re-analysis (K2-18b JWST Transits NIRISS SOSS + NIRSpec G395H) — Supplementary Data

description: Supplementary material for "A Comprehensive Re-analysis of K2-18 b's JWST NIRISS+NIRSpec Transmission Spectrum" by Schmidt et al., submitted to AAS Journals (2025).

This repository contains three categories of data products:



Data reduction reproduction — Eureka! control files (.ecf) and parameter files (.epf) alongside saved Stage 3 output for the two reductions of the NIRSpec G395H visit. These allow replication of our data reduction, light curve fitting, and transmission spectra extraction using the open-source code Eureka!

Transmission spectra — Reduced transmission spectra for NIRSpec G395H and NIRISS SOSS from Eureka!, FIREFLy, and exoTEDRF for different spectral resolutions.

Retrievals — Corner plots from atmospheric retrievals applied to each combination of NIRISS SOSS + NIRSpec G395H data sets. The retrievals used the open-source code POSEIDON as well as the open-source code BeAR.


For any additional data requests or questions, please contact: sschmi42@jh.edu
DOI: 10.5281/zenodo.8110620
title: Enhanced diffusion barrier layers for avoiding degradation in SOFCs aged for 14000 h during 2 years

description: The dataset contains all the data used for the publication called Enhanced diffusion barrier layers for avoiding degradation in SOFCs aged for 14000 h during 2 years, Bernadet et al., Journal of Power Sources, 555, 2023, 232400 (10.1016/j.jpowsour.2022.232400) as well as for the supplementary information.


Data is labeled with the figure number-letter and sample type.


All the figures related to the nano-XRF data (Fig4, FigS1-4) were obtained from the same dataset, shared for Fig4 and FigS1.
DOI: 10.5281/zenodo.11108773
title: Evaluation of a lateral flow multi-biomarker diagnostic test for tuberculosis

description: We performed a prospective cohort study of adults and adolescents presenting with symptoms compatible with TB from South Africa, The Gambia, Uganda and Vietnam. Prior to microbiological confirmation, 20 µL of capillary blood was analyzed using a multi-biomarker test (MBT) with 3 host cytokines. Accuracy of the test was determined in relation to GeneXpert Ultra results and case definition algorithm incorporating clinical and microbiological findings with patients classified as having TB or other respiratory diseases (ORD).

Data analysis was performed in R using the Tidymodels machine learning framework.
DOI: 10.5281/zenodo.13854862
title: Tiger occupancy

description: These datasets were used in "Tiger recovery amidst people and poverty" (Jhala et al. in review) for modelling multi-season tiger occupancy and their co-occurrence with other fauna. The dataset named "occupancy" includes variables on occupancy survey and site characteristics at 100 km2 grid scale for every four years from 2006 to 2018. There were in total four sampling cycles between this period. Occupancy surveys are provided as replicates with tiger presence and replicates with tiger absence per grid cell, per sampling year. Site covariates are provided as standardized values per grid cell. For details on site covariates please refer to Jhala et al. (in review).  Details on the methodology, data source, and resolution can be found in the peer-reviewed study (Link to study on publication).
DOI: 10.6084/m9.figshare.28319480
title: Supplemental Tables Bothner et al.xlsx

description: Data used to generate Figures 3 and 4 and Table 4 of Bothner et al.
DOI: 10.6084/m9.figshare.26308177
title: ATRA: lifespan

description: Raw dataset, statistical outputs, and accompanying R script for the lifespan study of a genetically diverse panel of species treated with all-trans retinoic acid and replicated across three testing sites from the Caenorhabditis Intervention Testing Program (CITP) manuscript: <b>Survey of anti-aging computational predictions identifies all-trans retinoic acid modulation of conserved longevity pathways in genetically diverse </b><b><i>Caenorhabditis </i></b><b>nematode</b>