cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.58132/a17qy4
title: Zbiór danych wykorzystanych do opracowania artykułu: Gotycka architektura kościoła farnego (Bożogrobców) pw. Świętego Ducha w Przeworsku

description: Zbiór plików z wykonaną przez dr. hab. Jakub Adamskiego dokumentacją gotyckiego kościoła farnego p.w. św. Ducha w Przeworsku, w związku z monograficznym opracowaniem architektury tego kościoła.Materiały zawierają dokumentację fotograficzną kościoła, rysunki pomiarowe oraz rekonstrukcje rysunkowe oparte na materiałach fotograficznych, przedstawiające poprzednie formy architektoniczne budowli. Wszystkie materiały są autorstwa dr. hab. Jakuba Adamskiego, wykonane aparatem pełnoklatkowym lustrzanym Canon z obiektywem Tamron.Zbiór zawiera następujące archiwa:1) widoki zewnętrzne kościoła - 57 plików2) widoki wnętrza kościoła - 66 plików3) sklepienia kościoła - 47 plików4) strychy kościoła - 57 plików5) rysunki i rekonstrukcje - 15 plików
DOI: 10.58132/opfekd
title: Zbiór danych wykorzystanych do opracowania artykułu: Strasburg – Wrocław – Kraków. O transferze górnoreńskiego stylu architektury sakralnej na Śląsk i do Małopolski w pierwszej połowie XIV w.

description: Dokumentacja rysunkowo-pomiarowa budowli poddanych analizie w artykule dr. hab. Jakub Adamskiego na temat górnoreńskiej genezy stylowej kościołów gotyckich na Śląsku i w Małopolsce na przełomie XIII i XIV wieku.Zbiór składa się z dokumentacji pomiarowej elementów budowli wykonanej metodą fotoskanu przy użyciu oprogramowania Agisoft Photoscan przez dr. Macieja Krzywkę pod kierunkiem dr. hab. Jakuba Adamskiego.Kolekcja zwiera rzuty filarów, służek i portali następujących budowli gotyckich:Kamieniec Ząbkowicki, kościół cystersów (około 1305-1350)Lubiąż, kościół cystersów (około 1280-1330)Kraków, katedra (1320-1364)Wrocław, katedra, korpus (około 1305-1350)Wrocław, kaplica św. Marcina (około 1280-1290)Wrocław, kościół św. Elżbiety (około 1300-1360)Wrocław, kościół św. Marii Magdaleny (około 1300-1370)Złotoryja, fara, korpus (około 1280-1310)
DOI: 10.58132/bjgwc3
title: Figurations of interspecies harmony: Feral children fiction and non-fiction originally written in English, from 1894 onwards

description:  Dataset v.1.0 for the research project:"Figurations of interspecies harmony in literature, film and other cultural texts of the English-speaking sphere, from the mid-19th to the 21st centuries", funded by the National Science Centre, Poland (grant no. UMO-2020/38/E/HS2/00130).Dataset consists of:a README.txt file with data description;a data_feral_children_fi_and_non_fi_in_English_from_1894.ods file with research data. Research data is a table with list of selected fiction and non-fiction books and short stories featuring feral children protagonists (understood as raised by or among nonhumans). All of the texts taken into consideration were written originally in English from the 1894 onwards.The table includes both fiction and non-fiction books.It excludes books and short stories that feature feral children only as incidental characters.The list is NOT exhaustive.
DOI: 10.58132/3ripsl
title: Figurations of interspecies harmony in literature, film, and other cultural texts of the English-speaking sphere, from the mid 19-th to the 21-st centuries

description: TABLE with a list of selected critical responses to Linda Hogan’s fictional and autobiographical works. The critical essays are analyzed in the context of methodological frameworks that they utilize.
DOI: 10.58132/obx3an
title: Korespondencja Daniela Ernesta Jablonskiego w zbiorach Moravian Archives (Bethlehem)

description: Wypisy i notatki z korespondencji Daniela Ernesta Jablonskiego w zbiorach Moravian Archives (Bethlehem). Przynależy do projektu "Tłumaczenie tolerancji: koncepcje, teksty i pośrednicy między Polską a protestanckimi Niemcami (1645-1795)"
DOI: 10.58132/frvcoz
title: Figurations of Interspecies Harmony. Discordant Harmonies: Interspecies Relations in the United States

description: TABLE with list of bibliographical sources for the article, extended through a listing of types of materials analyzed by the sources and explanations of how the sources connect to the main argument of the article:Columns A-D present publications relevant to studying figurations of interspecies harmony in an American context. Columns E-F present how the publications are relevant.
DOI: 10.58132/f7lltr
title: Figurations of interspecies harmony: The way of disc dog. Navigating harmonies in American canine frisbee

description: Dataset v. 1.0 for the research project:FIGURATIONS OF INTERSPECIES HARMONY IN LITERATURE, FILM, AND OTHER CULTURAL TEXTS OF THE ENGLISH-SPEAKING SPHERE, from the mid-19th to the 21st centuries, funded by the National Science Centre, Poland (grant no. UMO-2020/38/E/HS2/00130). This dataset is associated with the following paper:Jack Harrison and Sara Kruszona, ““The Way of Disc Dog”: Navigating Harmonies in American Canine Frisbee”, European journal of American studies [Online], 19-1 | 2024, Online since 07 February 2024, connection on 06 March 2024. URL: http://journals.openedition.org/ejas/21365; DOI: https://doi.org/10.4000/ejas.21365Dataset consists of:a README.txt file with data description;a data_set_Freestyle_disc_dog_related_media.ods;a list_of_photographs.ods;a .zip archive photographs_Sara_Kruszona_Jack_Harrison.zip.  A data_set_Freestyle_disc_dog_related_media.ods is a TABLE with list of selected books (in paperback and ebook versions), articles, webpages and videos available online. These are referred to in the article.A .zip archive photographs_Sara_Kruszona_Jack_Harrison.zip consists of photographs listed in file list_of_photographs.ods.
DOI: 10.58132/9k82ea
title: X-ray data for crystal structure of cucurbit[7]uril and histidine complexes

description: X-ray diffraction (XRD) data were collected using colourless, transparent, and well-formed crystals on an Agilent SuperNova diffractometer, which was controlled by the CrysAlis PRO software and equipped with a CuKα micro-focus X-ray source (λ=1.54 Å, 50.0 kV, and 0.8 mA) and a HyPix detector. The experiments were carried out at 100.0(2) K controlled using an Oxford Cryosystems cooling device. The crystals were placed on a MiTeGen mount with a droplet of immersion oil and immediately cooled. Each crystal was positioned 54.0 mm from the detector. Indexing and integration were performed using the CrysAlis PRO software.
DOI: 10.58132/xkn1du
title: Pyrolyzed cobalt hexacyanocobaltate dispersed on reduced-graphene-oxide as an electrocatalyst of the oxygen reduction reaction in an alkaline medium

description: Described is the development of a unique electrocatalytic material prepared by heat-treating a composite of a Prussian Blue analogue, cobalt hexacyanocobaltate, and immobilizing it on reduced graphene oxide (rGO). The pyrolysis process, heating at 500 OC, forms a material with catalytic cobalt centers that are active toward the electrochemical oxygen reduction reaction in alkaline media. Physicochemical properties of this material containing cobalt in different oxidation states have been elucidated using transmission electron microscopy, Raman spectroscopy, X-ray photoelectron spectroscopy, and various electrochemical diagnostic techniques. Experimental results have shown that this material displayed comparable electrocatalytic activity (e.g., onset potential) toward the oxygen reduction reaction in alkaline media to that of Vulcan-supported platinum nanoparticles. Formation of undesirable peroxide species, as demonstrated by monitoring ring currents during rotating ring-disk electrode measurements, was somewhat higher at the pyrolyzed cobalt hexacyanocobaltate on rGO than with platinum nanoparticles on a carbon black support; however, even in the worst case, these values were below 15%, which demonstrates a high activity of cyanide-bridged cobalt sites. This thermally prepared electrocatalytic material exhibits high stability and tolerance to alcohols such as methanol.
DOI: 10.58132/ckjyk2
title: Microelectrode-based probing of charge propagation and redox transitions in concentrated polyoxometallate electrolyte of potential utility for redox flow battery

description: Concentrated solutions of Keggin-type silicotungstic acid, as well as the system’s single crystals (H4SiW12O40*31H2O) and their colloidal suspensions have been tested using the microelectrode methodology to determine mass-transport, electron self-exchange and apparent (effective) diffusion-type coefficients for charge propagation and homogeneous (electron self-exchange) rates of electron transfers.
DOI: 10.58132/girclb
title: Research data for article: Model lipid raft membranes for embedding integral membrane proteins. Reconstitution of HMG-CoA reductase and its inhibition by statins

description: In this study, we present the reconstitution of HMG-CoA reductase in phospholipid liposomes composed of DOPC:Chol:SM at a 1:1:1 molar ratio. The liposomes were characterized by DLS method and visualized by fluorescence microscopy. The liposomes and proteoliposomes were spread at the air-water interface to form layers using Langmuir technique. The stability of the layers in time was investigated using Langmuir technique and the morphology was observed by Brewster angle microscopy. The activity of the embedded protein was measured using UV-VIs spectrophotometry.
DOI: 10.58132/brorex
title: Research data for article: Interfacial behavior of cubosomes. Combined Langmuir−Blodgett/ Langmuir−Schaefer and AFM investigations

description: In this study, we show the layers formed by the Langmuir technique by spreading cubosomes and mixtures of monoolein 1-oleoyl-rac-glycerol (GMO)/Pluronic F108. The supported layers were formed on mica substrate by either adsorption or transfer by the Langmuir Blodgett-Langmuir Schaeffer method and were subsequently visualized by atomic force microscopy both in air and in solution.
DOI: 10.58132/vcimgv
title: Research data for article: Gold electrode modified with proteoliposome-derived bilayer for electrochemical studies of HMG‑CoA reductase and its inhibition

description: Electrochemical methods (cyclic voltammetry and electrochemical impedance spectroscopy) were used to monitor changes in the catalytic properties or activity of membrane protein, HMG-CoA reductase (HMGR) in the presence of activators or inhibitors. The protein and its related coenzyme (HMG-CoA) were incorporated into a lipid bilayer obtained by spreading proteoliposomes on the surface of a gold electrode modified with thioglucose. The reconstitution of HMG-CoA reductase was investigated by following the NADP + reduction on the electrode using cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). The activity of HMGR was studied over time and in the presence of an inhibitor (fluvastatin). The inhibitory effect was electrochemically evaluated by monitoring the decrease of NADP + reduction current and changes in the impedance parameters of the HMGR-proteoliposome-derived bilayer.
DOI: 10.58132/ms2aka
title: Research data for article: PEGylated network nanostructured by gold nanoparticles for electrochemical sensing of aromatic redox and nonredox analytes

description: The design, tailoring, and physicochemical properties of a multicomponent polyethylene glycol (PEG)-based polymer doped with spherical nanoparticles modified with a lipoic acid derivative of cyclodextrin and its application for the electrochemical sensing of a ferrocene derivative and ibuprofen at low concentrations is presented. Such a composition increases the analytical performance of the sensor, supports further improvement of the detection limit, and enables the determination of the analyte after saturation of cyclodextrin cavities (high concentration of analyte) based on its diffusion response. The designed hybrid material was used for the direct and indirect determination of aromatic analytes─ferrocene derivative and ibuprofen─with very low detection limit.
DOI: 10.5517/ccdc.csd.cc2jjfxf
title: CCDC 2339505: Experimental Crystal Structure Determination

description: Related Article: C. Oliva-Colunga, J.J. Sánchez García, M. Flores-Alamo, E.I. Klimova|2024|IUCrData|9|x240234|doi:10.1107/S2414314624002347
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.22002/v6bfh-6rj10
title: Dataset: Pavement ant extract is a chemotaxis repellent for C. elegans

description: gcms blank control
DOI: 10.5281/zenodo.10881779
title: sula_variegata_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10881780
title: sula_variegata_spades_01.fasta.gz

description: .
DOI: 10.6084/m9.figshare.24417727
title: MEnet weight

description: MEnet model weight (best trial)
DOI: 10.6084/m9.figshare.24932559
title: Characterization of sugarcane mutants developed through gamma irradiations for their lignin content and <i>caffeic acid-O-methyl transferase</i> (<i>COMT</i>) gene mutations

description: Bagasse, the residue left after extracting juice from sugarcane stalks, is rich in lignocellulosic biomass. The lignin present in this plant biomass is the key factor that hinders the efficient extraction of ethanol from the bagasse. In the current study, γ-irradiated sugarcane mutants were evaluated for variation in lignin content and its corresponding <i>caffeic acid-O-methyl transferase</i> (<i>COMT</i>) gene. The acetyl bromide method was used to estimate lignin content in sugarcane mutants. PCR-based cloning of the <i>COMT</i> gene was performed in low lignin mutants as well as control plants in <i>E. coli</i> (strain DH5α) to understand the mechanism of variation at the molecular level. The Sanger sequencing for cloned gene was performed to check variation in gene sequence. In comparison to the control (21.5%), the mutant plants’ lignin content ranged from 13 to 28%. The Sanger sequencing revealed approximately the same length of the gene from mutants as well as a control plant. In comparison to the reference gene, the mutated gene showed SNPs and indels in different regions, which may have an impact on lignin content. Therefore, γ-irradiated mutagenesis is an acceptable approach to develop novel mutants of sugarcane with low lignin content to enhance bioethanol production from waste material using bioprocess technology.
DOI: 10.6084/m9.figshare.24932559.v1
title: Characterization of sugarcane mutants developed through gamma irradiations for their lignin content and <i>caffeic acid-O-methyl transferase</i> (<i>COMT</i>) gene mutations

description: Bagasse, the residue left after extracting juice from sugarcane stalks, is rich in lignocellulosic biomass. The lignin present in this plant biomass is the key factor that hinders the efficient extraction of ethanol from the bagasse. In the current study, γ-irradiated sugarcane mutants were evaluated for variation in lignin content and its corresponding <i>caffeic acid-O-methyl transferase</i> (<i>COMT</i>) gene. The acetyl bromide method was used to estimate lignin content in sugarcane mutants. PCR-based cloning of the <i>COMT</i> gene was performed in low lignin mutants as well as control plants in <i>E. coli</i> (strain DH5α) to understand the mechanism of variation at the molecular level. The Sanger sequencing for cloned gene was performed to check variation in gene sequence. In comparison to the control (21.5%), the mutant plants’ lignin content ranged from 13 to 28%. The Sanger sequencing revealed approximately the same length of the gene from mutants as well as a control plant. In comparison to the reference gene, the mutated gene showed SNPs and indels in different regions, which may have an impact on lignin content. Therefore, γ-irradiated mutagenesis is an acceptable approach to develop novel mutants of sugarcane with low lignin content to enhance bioethanol production from waste material using bioprocess technology.
DOI: 10.6084/m9.figshare.25137060
title: High variability in short and long-term recovery kinetic of blood cell count and blood chemistry in a partial body irradiation mouse model

description: In the aftermath of a nuclear disaster or accident, survivors will suffer from radiation-induced normal tissue damage. Recovery after radiation exposure is dictated by several factors, one of which is degree of shielding at time of exposure. This study aims to characterize the short and late term changes in kinetics and magnitude of pancytopenia and blood chemistry in a model of heterogeneous radiation exposure, or partial body irradiation (PBI), compared to whole body irradiation (WBI). Male C57BL/6 mice, 8-10 weeks of age, were WBI at 6 different doses (6, 6.1. 6.15, 6.2, 6.5, and 7.5 Gy) to establish the LD<sub>50</sub>. To determine the effect of shielding on blood cell counts and chemistry, animals were either WBI at 6 Gy (LD<sub>22</sub>30) or 6 Gy PBI with one leg shielding (LD<sub>0</sub>30). Complete blood counts and chemistry were measured at 1, 5-, 10-, 20-, 30- and 120-days post-irradiation. Irradiated animals had significant depletion of white blood cells, red blood cells and platelets up to 10 days post-irradiation. Separation between PBI and WBI were observed at 10- and 20-days post-irradiation at which point PBI animals showed sign of recovery while overall cell count remains depleted in WBI animals up to 30 days post-irradiation. In addition, significant changes were found in parameters indicative of hematopoietic injury including hemoglobin count, hematocrit count and white blood cell population. Significant changes were observed in kidney function with changes to blood urea nitrogen and calcium concentration at 5-days post-irradiation. At 10-days post-irradiation. liver function changes differentiated WBI from PBI animals. Long-term, irradiated animal’s chemistry values and many blood counts were not significantly different from Sham. In conclusion, partial shielding ensured complete survival and demonstrated a different recovery kinetics of blood and chemistry parameters after irradiation compared to survivors of whole body irradiation and no single hemopoietic parameter was able to consistently differentiate irradiated from Sham animals. This seems to indicate that there is no single robust hemopoietic parameter to differentiate those exposed from those who were not due to the inherent variability in individual responses. Furthermore, there were no significant long-term effects on these blood parameters between survivors of WBI and PBI except that shielding accelerated recovery.
DOI: 10.6084/m9.figshare.25137060.v1
title: High variability in short and long-term recovery kinetic of blood cell count and blood chemistry in a partial body irradiation mouse model

description: In the aftermath of a nuclear disaster or accident, survivors will suffer from radiation-induced normal tissue damage. Recovery after radiation exposure is dictated by several factors, one of which is degree of shielding at time of exposure. This study aims to characterize the short and late term changes in kinetics and magnitude of pancytopenia and blood chemistry in a model of heterogeneous radiation exposure, or partial body irradiation (PBI), compared to whole body irradiation (WBI). Male C57BL/6 mice, 8-10 weeks of age, were WBI at 6 different doses (6, 6.1. 6.15, 6.2, 6.5, and 7.5 Gy) to establish the LD<sub>50</sub>. To determine the effect of shielding on blood cell counts and chemistry, animals were either WBI at 6 Gy (LD<sub>22</sub>30) or 6 Gy PBI with one leg shielding (LD<sub>0</sub>30). Complete blood counts and chemistry were measured at 1, 5-, 10-, 20-, 30- and 120-days post-irradiation. Irradiated animals had significant depletion of white blood cells, red blood cells and platelets up to 10 days post-irradiation. Separation between PBI and WBI were observed at 10- and 20-days post-irradiation at which point PBI animals showed sign of recovery while overall cell count remains depleted in WBI animals up to 30 days post-irradiation. In addition, significant changes were found in parameters indicative of hematopoietic injury including hemoglobin count, hematocrit count and white blood cell population. Significant changes were observed in kidney function with changes to blood urea nitrogen and calcium concentration at 5-days post-irradiation. At 10-days post-irradiation. liver function changes differentiated WBI from PBI animals. Long-term, irradiated animal’s chemistry values and many blood counts were not significantly different from Sham. In conclusion, partial shielding ensured complete survival and demonstrated a different recovery kinetics of blood and chemistry parameters after irradiation compared to survivors of whole body irradiation and no single hemopoietic parameter was able to consistently differentiate irradiated from Sham animals. This seems to indicate that there is no single robust hemopoietic parameter to differentiate those exposed from those who were not due to the inherent variability in individual responses. Furthermore, there were no significant long-term effects on these blood parameters between survivors of WBI and PBI except that shielding accelerated recovery.
DOI: 10.6084/m9.figshare.25481806
title: Table S8: Image analysis of acoustic data and interpretation of rock stress orientations for geothermal exploration in Gothenburg borehole GE-1, Southwest Sweden

description: Table S8: Natural fractures and foliation
DOI: 10.5281/zenodo.10875444
title: Dataset for the submitted manuscript titled 'Response of Southern Ocean Resource Stress in a Changing Climate'

description: Netcdf output files of Primary Production, carbon export, Fe and Mn limitations, and deficiencies from PISCES-QUOTA model with Mn limitation (described in Anugerahanti and Tagliabue, 2023) forced by historical IPSL CM5A climate model simulation (1850-2005) and RCP8.5 high emission IPSL CM5A simulation (2005-2100) on the ORCA2 grid, as described and discussed in Anugerahanti and Tagliabue, in the manuscript submitted for Geophysical Research Letters. Due to the large size of the files, this has been collated to only contain surface/ upper 100m south of 40S.
DOI: 10.5281/zenodo.10881891
title: otus_scops_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10881892
title: otus_scops_spades_01.fasta.gz

description: .
DOI: 10.25345/c5tb0z615
title: MassIVE MSV000094407 - TopDIA: A Software Tool for Top-Down Data-Independent Acquisition Proteomics
title: E. coli proteins (300 ng) extracted from the sample were analyzed using an Orbitrap Fusion Lumos mass spectrometer (Thermo Fisher Scientific) coupled with an Ultimate 3000 (Thermo Fisher Scientific) reversed-phase liquid chromatography (RPLC) separation system with a C2 column (60 cm length, CoAnn Inc.). In the RPLC system, phase A was water with 0.1% formic acid (FA), and phase B was 60% acetonitrile (ACN) and 15% isopropanol (IPA) with 0.1% FA. A 98-min gradient of mobile phase B (0-5 min 5%, 5-7 min for 5% to 35%, 7-10 min for 35% to 50%, 10-97 min for 50% to 80%, 97-98 min from 80% to 99%) was applied with a flow rate of 400 nL/min. E. coli proteins were analyzed using both DDA and DIA modes. In each mode, six runs were performed separately, with each targeting a specific m/z range within the MS1 scan: 720-800, 800-880, 880-960, 960-1040, 1040-1120, and 1120-1200 m/z. MS1 spectra were collected with a resolution of 240,000 (at 200 m/z), 4 microscans, an automatic gain control (AGC) target value of 1x106, and a maximum injection time of 200 ms. MS/MS spectra were obtained with a scan range of 400-2000 m/z, a resolution of 60,000 (at 200 m/z), 1 microscan, an AGC target value of 1x106, and a maximum injection time of 500 ms. Fragmentation was performed using higher-energy collisional dissociation (HCD) with 30% NCE. In the DDA runs, the top six precursor ions from each MS1 scan were isolated with a 3 m/z window for MS/MS analysis. The dynamic exclusion was set to 60 seconds. In the DIA runs, a 4 m/z isolation window was used, resulting in a total of 20 MS/MS spectra for each cycle. Three technical replicates were obtained for each experiment.