cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5285/b8cf940850164ebeb4cba343384f88b8
title: Daily Light Detection and Ranging (LiDAR) scans of an eroding soft cliff at Happisburgh, UK (October-December 2019)

description: LiDAR (Light Detection And Ranging) images and model output from cliffs at Happisburgh, Norfolk, UK, 2019, from BLUE-coast and ScanLAB projects.
description: This dataset contains 67 point-cloud elevation and colour intensity data collected daily along a 450 metre coastal stretch at Happisburgh, UK, over a time span of 3 months (October 2, 2019 to December 23, 2019). Also included are subsets of these point-clouds, named slices and grids. Scans were taken approximately daily, and on some days only one scanner was run resulting in half-size scans. A single FARO S350 LiDAR scanner was placed at two fixed locations on the beach, spaced 178 metres alongshore and between 30 to 40 metres from the 10 metre high cliff. The duration of the scanning at each location was around 30 minutes. These data were collected to better understand the dynamic of beach-cliff and shore platform interaction along soft cliffed coasts. ScanLAB Projects Ltd were responsible for the collection of the data, along with the British Geological Survey (BGS), funded by the UK Natural Environment Research Council (NE/M004996/1; BLUE-coast project). This was a continuation of an Innovate UK project undertaken by ScanLAB Projects Ltd.
DOI: 10.5291/ill-data.crg-2423
title: The use of magnetic contrast layers for neutron reflectivity to investigate non-lamellar lipid liquid crystalline nanoparticle interactions
DOI: 10.5441/001/1.k8n02jn8
title: Data from: Overall dynamic body acceleration in straw-colored fruit bats increases in headwinds but not with airspeed

description: Atmospheric conditions impact how animals use the aerosphere, and birds and bats should modify their flight to minimise energetic expenditure relative to changing wind conditions. To investigate how free-ranging straw-colored fruit bats (Eidolon helvum) fly with changing wind support, we use data collected from bats fit with GPS loggers and an integrated triaxial accelerometer and measure flight speeds, wingbeat frequency, and overall dynamic body acceleration (ODBA) as an estimate for energetic expenditure. We predicted that if ODBA reflects energetic expenditure, then we should find a curvilinear relationship between ODBA and airspeed consistent with aerodynamic theory. We expected that bats would lower their airspeed with tailwind support and that ODBA will decrease with increasing tailwinds and increase with wingbeat frequency. We found that wingbeat frequency has the strongest positive relationship with ODBA. There was a small, but negative, relationship between airspeed and ODBA, and bats decreased ODBA with increasing tailwind. Bats flew at ground speeds of 9.6 ± 2.4 ms-1 (mean ± sd, range: 4.3 to 23.9 ms-1) and airspeeds of 10.2 ± 2.5 ms-1, and did not modify their wingbeat frequency with speed. Free-ranging straw-colored fruit bats therefore exerted more total ODBA in headwinds but not when they changed their airspeed. It is possible that the flexibility in wingbeat kinematics may make flight of free-ranging bats less costly than currently predicted or alternatively that the combination of ODBA and airspeed at our scales of measurement does not reflect this relationship in straw-colored fruit bats. Further work is needed to understand the full potential of free-ranging bat flight and how well bio-logging techniques reflect the costs of bat flight.
DOI: 10.6084/m9.figshare.23694870
title: drive-download-20230716T150614Z-001.zip

description: Data extracted from videos 1, 2, and 3.
DOI: 10.6084/m9.figshare.24865989
title: Supplementary Material for: Prognostic Significance of Intratumoral and Peritumoral Budding in Distal Extrahepatic Bile Duct Carcinoma

description: Introduction: Although tumor budding (TB) has been recognized as a representative adverse prognosticator in gastrointestinal malignancies, it is not well-elucidated in distal extrahepatic bile duct carcinoma (DBDC). Herein, we investigated the prognostic significance of peritumoral (PTB) and intratumoral (ITB) budding according to the modified DBDC staging of the 8th edition of the American Joint Committee on Cancer. 
Methods: PTB and ITB were independently evaluated in a cohort of DBDC patients (n = 410) based on the 2016 International Tumor Budding Consensus Conference (ITBCC). 
Results: High levels of PTB (PTBHigh, ≥ grade-2) and ITB (ITBHigh, ≥ grade-3) were identified in 316 (77%) and 238 (58%) cases, respectively. In univariate analysis, PTBHigh and ITBHigh, larger size and sclerosing tumor growth pattern, higher histologic grade, extrapancreatic location, adenocarcinomas unrelated to intraductal papillary neoplasm of the bile duct (IPNB), pancreatic, duodenal, and lymphovascular invasion, perineural invasion, cancer involvement of the bile duct resection margin, nodal metastasis, and higher T and N categories and disease stages were associated with shorter patient overall survival (OS) times. In multivariate analysis, PTBHigh and ITBHigh remained poor independent prognostic indicators of OS in DBDC patients. Specifically, ITBHigh could predict poor prognosis in patients with stage I (T1N0) DBDC. 
Conclusions: Both PTBHigh and ITBHigh were strong prognostic indicators in patients with DBDC. Thus, ITB could be used to predict worse prognoses in patients with DBDC, in which PTB is difficult to assess, especially for patients with stage I (T1N0) DBDC.
DOI: 10.6084/m9.figshare.24953532
title: Correlation analysis（N.ys）.tex

description: The correlation matrix between the refractive index of terahertz spectra and the content of each element in the protoliths
DOI: 10.6084/m9.figshare.25441186
title: Supplementary Material for: Alcohol use and mental health: how genetic information can help unravel their relationship

description: Background: Traditional epidemiological evidence suggests various associations exist between alcohol and mental/cognitive health outcomes. However, whether these reflect causal relationships remains unclear. Mendelian Randomization (MR) – a kind of instrumental variables analysis using genetic variants to proxy for an exposure of interest – has the potential to improve causal inference from observational data.
Summary: In the first part of this review, the challenges of causal inference in the field are discussed, and a theoretical and practical introduction to the technique of MR is given. Next, we report on literature searches performed to update a previous systematic review of MR studies evaluating alcohol–mental health relationships. Twelve relevant studies were identified and considered in the context of the 22 studies included in the previous review. While the reviewed MR literature suggests possible causal relationships/a lack thereof, for the most part, the nature of causal relationships between alcohol and mental health remains unclear. 
Key messages: MR is beginning to yield valuable insights into the causal effects of (problematic) alcohol consumption on mental and cognitive health outcomes. Future studies must be mindful of the technique’s underlying assumptions and should allow for potential non-linearity in relationships. Triangulating across sensitivity methods within MR studies, as well as between MR studies and other methods for enhanced causal inference, will be crucial.
DOI: 10.6084/m9.figshare.25592496
title: Supplementary Material for: Association between hypertrophic cardiomyopathy and variations in sarcomere gene and calcium channel gene in adults

description: Introduction: Calcium channel gene variations have been reported to be associated with hypertrophic cardiomyopathy (HCM) in family, but the relationship between calcium channel gene variations and HCM remains undefined in population.
Methods: A total of 719 HCM unrelated patients were initially enrolled. Finally, 371 patients were identified based on inclusion and exclusion criteria, including 145 patients with gene negative, 28 patients with a single rare calcium channel gene variation (calcium gene variation), 162 patients with a single pathogenic/likely pathogenic sarcomere gene variation (sarcomere gene variation) and 36 patients with a single pathogenic/likely pathogenic sarcomere gene variation and a single rare calcium channel gene variation (double gene variations). Then the demographic, electrocardiographic, echocardiographic and follow-up data were collected.
Results: Patients with double gene variations were at an earlier age and had more percent of family history of HCM, and had thicker walls, higher left ventricular outflow tract pressure gradient, more pathological Q waves, and more bundle branch block as compared with those with single sarcomere gene variation. During the follow-up period, patients with double gene variations had more primary endpoints than other three groups (p=0.0013). Multivariate analysis showed that double gene variations was the independent predictor of for primary endpoint events in patients (HR 4.82, 95% CI 1.77 to 13.2; p=0.002).
Conclusion: We found that patients with double gene variations had more severe HCM phenotype and prognosis. The pathogenesis effects of sarcomere gene variation and calcium channel gene variation may be cumulative in HCM populations.
DOI: 10.6084/m9.figshare.9911753
title: Dataset 3.stl

description: blood vessel model
DOI: 10.6084/m9.figshare.9911762
title: Dataset 6.STL

description: mould for producing acoustic test blocks
DOI: 10.6084/m9.figshare.9911765
title: Dataset 7.STL

description: holder to place acoustic test block in acoustic characterization set-up
DOI: 10.7939/dvn/10835
title: County-level detection dates for beech scale in Canada and the United States

description: This dataset contains the years beech scale (Cryptococcus fagisuga; a predisposing agent of beech bark disease) was first detected in counties of Canada and the United states. These data were aggregated from observations made from 1890 to 2015 in order to map the spread of the insect throughout its invaded range in eastern North America. Detection year data are organized by country, province/state, and county for a total of 389 records with references to their original reporting literature.
DOI: 10.3886/e198224v1
title: Data and Code for On the Economics of Extinction and Possible Mass Extinctions

description: Human beings’ domination of the planet has not been kind to many species. This is to be expected. Humans have radically altered natural landscapes, harvested heavily from the ocean, and altered the climate in an unprecedented way. Recent concerns over the extent and rate of biodiversity loss have led to renewed interest in extinction outcomes and speculation concerning humans’ potential role in any future mass extinction. In this paper, we discuss the economic causes of extinction in two high-profile cases — Sharks and the North American Buffalo — and then extend our analysis to multiple species and discuss the possibility of mass extinction. Throughout, we present evidence drawn from authoritative data sources with a focus on shark populations to ground our analysis. Despite large gaps in our data, the available evidence reveals a worrisome trend: extinction risks are rising for many species and policymakers have been very slow to react.
DOI: 10.6084/m9.figshare.23993511.v1
title: Insights from the Field: Exploring Students’ Perspectives on Bad Unit Testing Practices

description: Insights from the Field: Exploring Students’ Perspectives on Bad Unit Testing Practices
DOI: 10.6084/m9.figshare.24648342
title: Dataset 6 multipage figure 18.pdf

description: Multipage Version of Figure 18
DOI: 10.6084/m9.figshare.24648354
title: Dataset 9 multipage figure 23.pdf

description: Multipage Version of Figure 23
DOI: 10.6084/m9.figshare.25024958
title: Data from "Hidden rivals: the negative impacts of dolphinfish on seabird foraging behavior"

description: ForagingTrip_inSOJ_Parameter.csv: This table shows parameters of foraging trips by streaked shearwaters (<i>Calonectris leucomelas</i>) breeding in Awashima Island, Japan. Only foraging trips completed in the Sea of Japan (SOJ) are shown in the table. 'Trip duration' serves as an indicator of the time cost associated with foraging, while 'maximum distance from the colony' reflects the geographical spread of the streaked shearwaters.
DOI: 10.6084/m9.figshare.26462638
title: Supplementary Material for: Real-world Disproportionality Analysis of the FDA Adverse Event Reporting System (FAERS) Database for Asciminib

description: Introduction: Asciminib is primarily utilized for treating Philadelphia chromosome-positive chronic myeloid leukemia in its chronic phase among patients harboring the T315I mutation or those who have been previously treated with at least two tyrosine kinase inhibitors. The safety profile of asciminib across a broad patient population over an extended timeframe remains unverified. This study uses a real-world pharmacovigilance database to evaluate the adverse events (AEs) linked with asciminib, providing valuable insights for clinical drug safety.
Methods: Data from the FDA Adverse Event Reporting System (FAERS) database, spanning from October 2021 to December 2023, served as the basis for this analysis. The extent of disproportional events was assessed using sophisticated metrics such as the reporting odds ratio, proportional reporting ratio, information component, and empirical Bayesian geometric mean.
Results: Within the specified period, the FAERS database documented 3,913,574 AE reports, with asciminib being associated with 966 incidents. Reactions to asciminib spanned 27 system organ categories. Utilizing four distinct analytical algorithms, 663 significant preferred terms exhibiting disproportional frequencies were identified. Notably, this investigation uncovered 26 significant AEs linked to off-label asciminib use, encompassing conditions such as gynecomastia, nephrotic syndrome, orchitis, pyelonephritis, hepatotoxicity, and pancreatitis. The median onset time for asciminib-related AEs was 52.5 days, ranging from 17 to 122.75 days.
DOI: 10.6084/m9.figshare.26502262
title: Supplementary Material for: Changes in ASCVD Risk Scores in a Predominantly Black Cohort with HIV and Associated Comorbidities: A Preliminary Study

description: Introduction: People with HIV (PWH) have increased risk of atherosclerotic cardiovascular disease (ASCVD) compared to non-PWH, but the reasons for this increased risk remain elusive. We investigated the change in ASCVD risk scores over 4-years to identify clinical factors associated with change in risk scores or high risk scores.
Methods: We conducted a preliminary study using retrospective analysis of PWH, between 40-75 years old, seen at the Evelyn Jordan Center with at least two routine HIV visits. We collected clinical and demographic data and calculated the ASCVD risk scores using the Pooled Cohort Equation. Exploratory analyses examined change in risk score categories over time. Final adjusted analysis examined factors associated with change in continuous risk scores over time. 
Results: Our sample included 187 PWH, 166 were Black/African American and 79 were female. We found no significant change in ASCVD risk score over time. The risk score was significantly higher in PWH with hepatitis C (7.34%; 95% CI 2.59, 12.09; p=0.003) and trended higher in those with dual hepatitis B/C and hepatitis B compared to those without hepatitis (p=0.07). 
Conclusion: We found that ASCVD risk did not change over a 4-year period among predominantly Black young PWH, but infection with hepatitis C and dual hepatitis B/C were associated with higher ASCVD risk scores. Our findings illustrate the need for further longitudinal studies evaluating change in CVD risk and investigating viral hepatitis as an added potential contributor to increased CVD risk in high-risk, vulnerable populations.
DOI: 10.6084/m9.figshare.5400793
title: usALEX-smFRET raw data for figure S2

description: The dataset includes the raw data of usALEX-smFRET measurements (stored in photon-HDF5 file format) of 6 different doubly-labeled lacCONS promoter dsDNA constructs. This raw data is the basis for figure S2.
DOI: 10.6084/m9.figshare.24648336
title: Dataset 5 multipage figure 16.pdf

description: Multipage Version of Figure 16
DOI: 10.6084/m9.figshare.7353944
title: Dataset 1.doc

description: The Table 2-4 in Dataset 1 are the specific data of diagram 1,2, table 2A-2E in manuscript.
DOI: 10.18419/darus-2242
title: Infrared imaging of laser based direct energy deposition of AlMg5 wire

description: The data shows temperature fields, which were recorded during laser-based direct energy deposition of AlMg5 wires by means of infrared imaging. All captured temperature fields are given as sequences of csv data. Each frame of the acquired image sequences is represented by its individual csv table, with its corresponding frame number. Three exemplary videos are additionally included as avi files. The investigated parameter combinations are given in the .csv table. The present data include the images of the grain structure in the cross-sections of metallographically prepared samples.
DOI: 10.3886/icpsr08495.v5
title: Juvenile Detention and Correctional Facility Census, 1984-1985
title: Version 5

description: This survey is the eighth in a series of data collection efforts aimed at providing information on the number and type of juveniles placed in state and local residential facilities for juvenile offenders. Six types of public and private facilities are covered: (1) detention centers, (2) shelters, (3) reception or diagnostic centers, (4) training schools, (5) ranches, forestry camps, and farms, and (6) halfway houses and group homes. Survey items include facility capacity, number of full-time and part-time staff, number of admissions and discharges, average quarterly population, and expenditures by the facility. Data for facility residents include age, sex, and average length of stay.
description: Public and private juvenile facilities in operation in the United States on February 1, 1985, were included in the census if they housed three or more residents, if at least 50 percent of the residents were juveniles, and if accused or adjudicated delinquents and status offenders represented at least 1 percent of their average daily population. In California, however, all California Youth Authority facilities were included in the census. Juvenile facilities operated as part of adult jails were excluded, as were nonresidential facilities, facilities exclusively for drug or alcohol abusers or nonoffenders, and federal juvenile correctional facilities.
description: Datasets: DS0: Study-Level Files DS1: Public Facilities Data DS2: Private Facilities Data
description: Juveniles in public and private juvenile detention, correctional, and shelter facilities in operation in the United States on February 1, 1985.
DOI: 10.4121/19222656
title: Post-flood field survey of the Ahr Valley (Germany)

description: This repository contains Metadata associated with the report "Post-flood field survey of the Ahr Valley (Germany) - <i>Building damages and hydraulic aspects</i>" by P. Korswagen, S. Harish, J. Oetjen and D. Wüthrich (DOI: 10.4233/uuid:3cafd772-facd-4e3a-8b1a-cee978562ff1)<br><br>THIS METADATA INCLUDES: <br><b>1. Geo-referenced pictures</b> collected during a field survey of the Ahr Valley (Germany) on August 17-19th 2021.<br>Photos have been arranged based on the town were they were taken. Eight locations have been selected: Dernau, Rech, Mayschoß, Altenahr, Kreuzberg & Altenburg, Brück, Insul, Schuld. Pictures are named starting with the first letter of each location.<br>Photos have been categorised into three groups: W : photos showing a watermark on a façade, H : photos identifying building damage, and M : other miscellaneous images. These characters are placed second in the picture file names.<br>Photos are numbered continuously for every location (01 to 99); this means that sequential photos were taken close to each other in space. For every location, case studies of building damage (H photos) are further grouped together with an identifying character behind an underscore space (_).<br><i>e.g.</i> 'DH01_A.jpg' contains a photo taken in Dernau (D), showing building damage (H) and belonging to case study A.<br><b>2. Georeferenced water-levels</b> measured at multiple locations in the Ahr valley, presented in the file <i>Waterlevels_Data.xlsx</i>
DOI: 10.5066/p9tjts8m
title: High-resolution (1 m) digital elevation model (DEM) of San Francisco Bay, California, created using bathymetry data collected between 1999 and 2020 (ver. 2.0, July 2021)

description: A 1-m resolution bathymetric digital elevation model (DEM) of all off San Francisco Bay was constructed from bathymetric surveys collected from 1999 to 2016. The DEM has been divided into northern and southern sections due to file size, and is available in both MLLW and NAVD88 versions.

Background: In 2014 and 2015 the California Ocean Protection Council (OPC) contracted the collection of bathymetric surveys of large portions of San Francisco Bay. A total of 93 surveys were collected using a combination of multibeam and interferometric side scan sonar systems. Of those 93 surveys, 75 consist of swaths of data ranging from 18- to just over 100-meters wide. These swaths were separated by data gaps ranging from 10- to just over 300-meters wide. The no-data areas required interpolation to create a continuous surface. The creation of this DEM refines techniques developed by the USGS to create DEMS from historic bathymetric data. The OPC surveys, along with those collected by the United States Geological Survey (USGS), National Oceanic and Atmospheric Administration (NOAA), NOAA's National Ocean Service (NOS), and the United States Army Corps of Engineers (USACE), allow the creation of a continuous, high-resolution bathymetric surface that can be compared to earlier surveys to delineate regions of sediment erosion and deposition.