cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3872005
title: COVID 19 SARS COV2 targets and small molecule data including insilico analysis

description: Welcome to the repository for the COVID-19 research data. Corresponding Author: Girinath G. Pillai and few experts Co-authors: Team of experts, scholars and students To join dedicated Slack Discussion : https://join.slack.com/t/nyroindia/shared_invite/zt-ejes216c-QZzEK_G5tNKIjewbVj2IPA We commit to conduct research analysis and all the findings and data will be open and anyone can use or help us improve the data. The parameters for checkpoints are: A) Pharmacophore Modelling - i) generate pharmacophore reference maps from XRay crystal geometry, ii) Generate all possible conformers of the dataset molecules for screening. B) Virtual Screening - i) highest docking score within the dataset, ii) lowest clashes (interligand or intraligand), iii) interactions with key amino acid residues based on literature reports, PROSITE server and pocket finding algorithm like DoGSite or CASTp iv) optimal LE values and v) satisfactory interactions between small molecules and amino acids. C) Selection - i) binding affinity range predictions, lowest among the dataset, ii) free binding energy calculation considering desolvation terms, lowest among the dataset and iii) torsion analysis - coverage of bonds in CSD database. D) Optimization - i) pharmacokinetic properties to be generated from selected hits and an optimal balance of properties to be considered for candidate selection criteria. E) For novel lead molecules - i) chemical space exploration on building blocks could be carried out, ii) on-demand synthesis and procurement. If you prefer you could always cite https://github.com/giribio/COVID19 Feel free to create any issues in Github or feel free to contact me via Slack for any queries. Thanks and let us fight against COVID-19 in all possible ways.
DOI: 10.5281/zenodo.3872006
title: COVID 19 SARS COV2 targets and small molecule data including insilico analysis

description: Welcome to the repository for the COVID-19 research data. Corresponding Author: Girinath G. Pillai and few experts Co-authors: Team of experts, scholars and students To join dedicated Slack Discussion : https://join.slack.com/t/nyroindia/shared_invite/zt-ejes216c-QZzEK_G5tNKIjewbVj2IPA We commit to conduct research analysis and all the findings and data will be open and anyone can use or help us improve the data. The parameters for checkpoints are: A) Pharmacophore Modelling - i) generate pharmacophore reference maps from XRay crystal geometry, ii) Generate all possible conformers of the dataset molecules for screening. B) Virtual Screening - i) highest docking score within the dataset, ii) lowest clashes (interligand or intraligand), iii) interactions with key amino acid residues based on literature reports, PROSITE server and pocket finding algorithm like DoGSite or CASTp iv) optimal LE values and v) satisfactory interactions between small molecules and amino acids. C) Selection - i) binding affinity range predictions, lowest among the dataset, ii) free binding energy calculation considering desolvation terms, lowest among the dataset and iii) torsion analysis - coverage of bonds in CSD database. D) Optimization - i) pharmacokinetic properties to be generated from selected hits and an optimal balance of properties to be considered for candidate selection criteria. E) For novel lead molecules - i) chemical space exploration on building blocks could be carried out, ii) on-demand synthesis and procurement. If you prefer you could always cite https://github.com/giribio/COVID19 Feel free to create any issues in Github or feel free to contact me via Slack for any queries. Thanks and let us fight against COVID-19 in all possible ways.
DOI: 10.5281/zenodo.3871930
title: Dataset: Breaking Type-Safety in Go: An Empirical Study on the Usage of the unsafe Package

description: This dataset contains all script used in the study, as well as the raw data extracted from the repositories and the processed data used to analyze our RQs in the manuscript "Breaking Type-Safety in Go: An Empirical Study on the Usage of the unsafe Package". For more information on how to understand the folder structure, scripts, and dataset, please read the README.md.
DOI: 10.5281/zenodo.3871931
title: Dataset: Breaking Type-Safety in Go: An Empirical Study on the Usage of the unsafe Package

description: This dataset contains all script used in the study, as well as the raw data extracted from the repositories and the processed data used to analyze our RQs in the manuscript "Breaking Type-Safety in Go: An Empirical Study on the Usage of the unsafe Package". For more information on how to understand the folder structure, scripts, and dataset, please read the README.md.
DOI: 10.5281/zenodo.3871746
title: Reuse of static analysis rule dataset (CADD system)

description: Reuse of static analysis rules study dataset (in Portuguese). <em>Anonymous author f</em>or double-blind review.
DOI: 10.5281/zenodo.3871747
title: Reuse of static analysis rule dataset (CADD system)

description: Reuse of static analysis rules study dataset (in Portuguese). <em>Anonymous author f</em>or double-blind review.
DOI: 10.5281/zenodo.3813711
title: An eye for a tooth: Thylacosmilus was not a marsupial "saber-tooth predator"

description: Digital files and finite element models used in publication.
description: {"references": ["Janis et al. (2020) n eye for a tooth: Thylacosmilus was not a marsupial \"saber-tooth predator. Peerj."]}
DOI: 10.5281/zenodo.3813712
title: An eye for a tooth: Thylacosmilus was not a marsupial "saber-tooth predator"

description: Digital files and finite element models used in publication.
description: {"references": ["Janis et al. (2020) n eye for a tooth: Thylacosmilus was not a marsupial \"saber-tooth predator. Peerj."]}
DOI: 10.25345/c56t45
title: MassIVE MSV000085524 - Austrobuxus carunculatus submission
title: EtOAc fruit extract of Austrobuxux carunculatus - DDA LC-MS/MS analysis run in positive ionisation mode. Raw and processed data.
DOI: 10.5281/zenodo.3871778
title: Supplementary materials for Weiss et al, 2020, Neuron Volume 105 issue 1

description: Supplementary materials for the paper "Human Olfaction without Apparent Olfactory Bulbs". by Weiss et al, published in Neuron Volume 105 Issue 1, pages 35-45.
DOI: 10.5281/zenodo.3871779
title: Supplementary materials for Weiss et al, 2020, Neuron Volume 105 issue 1

description: Supplementary materials for the paper "Human Olfaction without Apparent Olfactory Bulbs". by Weiss et al, published in Neuron Volume 105 Issue 1, pages 35-45.
DOI: 10.5281/zenodo.3667750
title: Information Leaks in Federated Learning

description: With the surge in data collection and analytics, concerns are raised with regards to the privacy of the individuals represented by the data. In settings where the data is distributed over several data holders, federated learning offers an alternative to learn from the data without the need to centralize it in the first place. This is achieved by exchanging only model parameters learned locally at each data holder. This greatly limits the amount of data to be transferred, reduces the impact of data breaches, and helps to preserve the individual’s privacy. Federated learning thus becomes a viable alternative in IoT and Edge Computing settings, especially if the data collected is sensitive. However, risks for data or information leaks still persist, if information can be inferred from the models exchanged. This can e.g. be in the form of membership inference attacks. In this paper, we investigate how successful such attacks are in the setting of sequential federated learning. The cyclic nature of model learning and exchange might enable attackers with more information to observe the dynamics of the learning process, and thus perform a more powerful attack.
DOI: 10.5281/zenodo.3667751
title: Information Leaks in Federated Learning

description: With the surge in data collection and analytics, concerns are raised with regards to the privacy of the individuals represented by the data. In settings where the data is distributed over several data holders, federated learning offers an alternative to learn from the data without the need to centralize it in the first place. This is achieved by exchanging only model parameters learned locally at each data holder. This greatly limits the amount of data to be transferred, reduces the impact of data breaches, and helps to preserve the individual’s privacy. Federated learning thus becomes a viable alternative in IoT and Edge Computing settings, especially if the data collected is sensitive. However, risks for data or information leaks still persist, if information can be inferred from the models exchanged. This can e.g. be in the form of membership inference attacks. In this paper, we investigate how successful such attacks are in the setting of sequential federated learning. The cyclic nature of model learning and exchange might enable attackers with more information to observe the dynamics of the learning process, and thus perform a more powerful attack.
DOI: 10.5281/zenodo.3872039
title: Knee cartilage segmentation literature - For Hunter Viz 2020

description: Dataset used for the John Hunter - Excellence in Plotting Context 2020
DOI: 10.5281/zenodo.3872040
title: Knee cartilage segmentation literature - For Hunter Viz 2020

description: Dataset used for the John Hunter - Excellence in Plotting Context 2020
DOI: 10.5281/zenodo.3568293
title: Grain-size control on detrital zircon cycloprovenance in the late Paleozoic Paradox and Eagle basins, USA

description: Detrital zircon U-Pb and grain size data for JGR: Solid Earth: "Grain size control on detrital zircon cycloprovenance in the late Paleozoic Paradox and Eagle basins, USA" by Ryan J. Leary, M. Elliot Smith, and Paul Umhoefer.
DOI: 10.5281/zenodo.3568294
title: Grain-size control on detrital zircon cycloprovenance in the late Paleozoic Paradox and Eagle basins, USA

description: Detrital zircon U-Pb and grain size data for JGR: Solid Earth: "Grain size control on detrital zircon cycloprovenance in the late Paleozoic Paradox and Eagle basins, USA" by Ryan J. Leary, M. Elliot Smith, and Paul Umhoefer.
DOI: 10.5281/zenodo.3872263
title: MigParl. A Corpus of Speeches on Migration and Integration in Germany's Regional Parliaments

description: MigParl is an indexed and linguistically annotated corpus of speeches on migration and integration affairs in Germany’s regional parliaments (“Landtage”). The corpus has been prepared in the MigTex Project (principal investigators: Andreas Blätte / University of Duisburg-Essen, Ruud Koopmans / Berlin Social Science Center), using the resources and the infrastructure of the PolMine Project. MigTex was part of a larger joint project to establish the research community of the <em>German Centre for Migration and Integration Affairs</em> (<em>Deutsches Zentrum für Migration and Integrationsforschung</em> / DeZIM). Funding awarded by Germany’s <em>Federal Ministry for Family Affairs, Senior Citizens, Women and Youth</em> (<em>Bundesministerium für Familie, Senioren, Frauen und Jugend</em> / BMFSFJ) is gratefully acknowleged.
DOI: 10.5281/zenodo.3872071
title: Contextualisation of Data Flow Diagrams for security analysis: Pilot study model

description: CAIRIS model package to accompany 'Contextualisation of Data Flow Diagrams for security analysis' GraMSec 2020 paper. The model package can be loaded in CAIRIS via the System &gt;&gt; Import Model menu.
DOI: 10.5281/zenodo.3872072
title: Contextualisation of Data Flow Diagrams for security analysis: Pilot study model

description: CAIRIS model package to accompany 'Contextualisation of Data Flow Diagrams for security analysis' GraMSec 2020 paper. The model package can be loaded in CAIRIS via the System &gt;&gt; Import Model menu.
DOI: 10.5281/zenodo.3872081
title: Predictability of European winter 2019/20: Indian Ocean dipole impacts on the NAO

description: Data and code to reproduce the figures in Atmospheric Science Letters publication "Predictability of European winter 2019/20: Indian Ocean dipole impacts on the NAO". Please cite the published ASL article if you use this dataset.
DOI: 10.5281/zenodo.3872082
title: Tectono-stratigraphic and thermal evolution of the western Betic flysch: implications for the geodynamics of South Iberian margin and Alboran Domain

description: Table and Figure from article "<strong>Tectono-stratigraphic and thermal evolution of the western Betic flysch: implications for the geodynamics of South Iberian margin and Alboran Domain" accepted to AGU, Tectonics</strong>
DOI: 10.5281/zenodo.3872083
title: Tectono-stratigraphic and thermal evolution of the western Betic flysch: implications for the geodynamics of South Iberian margin and Alboran Domain

description: Table and Figure from article "<strong>Tectono-stratigraphic and thermal evolution of the western Betic flysch: implications for the geodynamics of South Iberian margin and Alboran Domain" accepted to AGU, Tectonics</strong>
DOI: 10.5281/zenodo.3872275
title: Coordinates tracing 2D outlines of beaks (birds and squid)

description: Two-dimensional coordinates for lines traced onto images of beaks. This is a .zip archive xy coordinates (250 files, .txt); and a list of specimen names (1 file, .csv). All images traced in FIJI. For each specimen, there is a trace of the beak rostrum and a separate trace of the beak bite surface. Each trace file should be a list of xy coordinates that ends at the beak tip. This must be checked/verified/corrected for all files before running any analyses! I recommend visual inspection by plotting each beak dataset as a scatterplot in a color spectrum (rainbow, etc.). These were traced over pixel images, so each file has a different number of xy coordinates (depending on the pixel resolution/image size that was traced). All bird specimen images were downloaded from Phenome10k.org All cephalopod specimens were traced from images published in: Xavier, J. C. & Cherel, Y. 2009 Cephalopod beak guide for the Southern Ocean. British Antarctic Survey.
description: Please email k.ritterbush@utah.edu with any questions.
DOI: 10.5281/zenodo.3872276
title: Coordinates tracing 2D outlines of beaks (birds and squid)

description: Two-dimensional coordinates for lines traced onto images of beaks. This is a .zip archive xy coordinates (250 files, .txt); and a list of specimen names (1 file, .csv). All images traced in FIJI. For each specimen, there is a trace of the beak rostrum and a separate trace of the beak bite surface. Each trace file should be a list of xy coordinates that ends at the beak tip. This must be checked/verified/corrected for all files before running any analyses! I recommend visual inspection by plotting each beak dataset as a scatterplot in a color spectrum (rainbow, etc.). These were traced over pixel images, so each file has a different number of xy coordinates (depending on the pixel resolution/image size that was traced). All bird specimen images were downloaded from Phenome10k.org All cephalopod specimens were traced from images published in: Xavier, J. C. & Cherel, Y. 2009 Cephalopod beak guide for the Southern Ocean. British Antarctic Survey.
description: Please email k.ritterbush@utah.edu with any questions.
DOI: 10.5281/zenodo.3872105
title: IO Islamic 1017. Majma'-alḥasanât, A Second Work to Which the Title of قصص الانبیا is Assigned

description: IO Islamic 1017. Majma’-alḥasanât, A Second Work to Which the Title of قصص الانبیا is Assigned
DOI: 10.5281/zenodo.3872106
title: IO Islamic 1017. Majma'-alḥasanât, A Second Work to Which the Title of قصص الانبیا is Assigned

description: IO Islamic 1017. Majma’-alḥasanât, A Second Work to Which the Title of قصص الانبیا is Assigned
DOI: 10.5281/zenodo.3872111
title: IO Islamic 2442 (2). Majma'-alḥasanât, A Second Work to Which the Title of قصص الانبیا is Assigned

description: IO Islamic 2442 (2). Majma’-alḥasanât, A Second Work to Which the Title of قصص الانبیا is Assigned
DOI: 10.5281/zenodo.3872112
title: IO Islamic 2442 (2). Majma'-alḥasanât, A Second Work to Which the Title of قصص الانبیا is Assigned

description: IO Islamic 2442 (2). Majma’-alḥasanât, A Second Work to Which the Title of قصص الانبیا is Assigned
DOI: 10.6073/pasta/31725abaa6db03f17002e224285f2629
title: Nyack Floodplain RiverNet surface water and groundwater dissolved oxygen, conductivity, water level, and temperature Northwest Montana, USA, 2012-2019

description: Water dissolved oxygen, conductivity, temperature, and level from ten locations in the Nyack Floodplain of the Middle Fork of the Flathead River in Northwest Montana, USA. Measurements are made hourly for the period of 2012 to 2019. Six sensor are placed in groundwater wells and four are placed in surface water. Data have been cleaned to remove bad data and flag potentially anomalous observations.
DOI: 10.17632/hjnwp64z68.1
title: Draft Genome Sequence of Cercospora citrullina Cooke, causing Leaf Spot on Cucurbits

description: The fungus Cercospora citrullina is an agriculturally important plant pathogen that causes leaf spot in cucurbits across the world. Lack of genetic information about this fungus prevents a better understanding of its patho-system. Therefore, this study was initiated to study the pathogenic behaviour by detecting genomic features and predicting genomic elements of C. citrullina (isolate Cerl 37-09) from infected leaf samples of Lagenaria siceraria L. In this study, we have constructed a draft genome assembly of C. citrullina using long read native DNA paired-end and mate-pair sequencing on Illumina HiSeq 2500 platform. The draft genome is consisting of 189 contigs with an N50 of 38,592 bp that included 263 single-copy orthologs and 8,856 genes. The C. citrullina genome sequence available at DDBJ/ENA/GenBank under the accession number JAASFF000000000 is a valuable resource to aid for future population genomics studies.
DOI: 10.3886/e114432v1-24712
title: Replication data for: Ownership, Concentration, and Investment

description: The US business sector has underinvested relative to profits, funding costs, and Tobin's Q since the early 2000s. Building on prior work, we argue that decreasing competition, rising intangibles, and tightening governance explain, respectively, about one-half, one-third, and one-sixth of the investment gap. In particular, quasi-indexer ownership appears to lower investment, and this effect is stronger in noncompetitive industries.
DOI: 10.18112/openneuro.ds002156.v2.0.0
title: Multi-echo masking test dataset
DOI: 10.5281/zenodo.3871785
title: SI data: A high-throughput structural and electrochemical study of metallic glass formation in Ni-Ti-Al

description: Journal: ACS Combinatorial Science<br> Title: A high-throughput structural and electrochemical study of metallic glass formation in Ni-Ti-Al<br> Author(s): Joress, Howie; DeCost, Brian; sarker, suchismita; Braun, Trevor; Jilani, Sidra; Smith, Ryan; Ward, Logan; Laws, Kevin; Mehta, Apurva; Hattrick-Simpers, Jason
DOI: 10.5281/zenodo.3871786
title: SI data: A high-throughput structural and electrochemical study of metallic glass formation in Ni-Ti-Al

description: Journal: ACS Combinatorial Science<br> Title: A high-throughput structural and electrochemical study of metallic glass formation in Ni-Ti-Al<br> Author(s): Joress, Howie; DeCost, Brian; sarker, suchismita; Braun, Trevor; Jilani, Sidra; Smith, Ryan; Ward, Logan; Laws, Kevin; Mehta, Apurva; Hattrick-Simpers, Jason
DOI: 10.5281/zenodo.3872129
title: Raw diffraction data for [NiFeSe] hydrogenase pressurized with O2 gas - dataset wtO2

description: Diffraction data measured at ESRF beamline ID29 on October 2, 2017. Image files are uploaded in blocks of gzip-compressed cbf files.
description: This work was supported by grant PTDC/BBB-BEP/2885/2014 funded by Fundação para a Ciência e Tecnologia (FCT/MCTES), and by research unit MOSTMICRO (Project LISBOA-01-0145-FEDER-007660) cofunded by FCT/MCTES and FEDER funds through COMPETE2020 - Programa Operacional Competitividade e Internacionalização (POCI). SZ was recipient of fellowship SFRH/BD/100314/2014 from FCT/MCTES.
DOI: 10.5281/zenodo.3872130
title: Raw diffraction data for [NiFeSe] hydrogenase pressurized with O2 gas - dataset wtO2

description: Diffraction data measured at ESRF beamline ID29 on October 2, 2017. Image files are uploaded in blocks of gzip-compressed cbf files.
description: This work was supported by grant PTDC/BBB-BEP/2885/2014 funded by Fundação para a Ciência e Tecnologia (FCT/MCTES), and by research unit MOSTMICRO (Project LISBOA-01-0145-FEDER-007660) cofunded by FCT/MCTES and FEDER funds through COMPETE2020 - Programa Operacional Competitividade e Internacionalização (POCI). SZ was recipient of fellowship SFRH/BD/100314/2014 from FCT/MCTES.
DOI: 10.5281/zenodo.3872431
title: SCINDA GPS and UHF data supporting analysis in "On the assessment of daily Equatorial Plasma Bubble occurrence modeling and forecasting"

description: This dataset consists of ionospheric scintillation data collected from August 1, 2013 until July 25, 2014 by a collection of GPS and UHF receiver stations in the Scintillation Network Decision Aid (SCINDA) network (Groves et al., 1997). This particular dataset supports the analysis conducted in Carter et al. (2020). <br> Carter, B.A., J.L. Currie, T. Dao, E. Yizengaw, J.M. Retterer, M. Terkildsen, K. Groves and R. Caton (2020), On the assessment of daily Equatorial Plasma Bubble occurrence modeling and forecasting, Submitted to Space Weather, Jun 2020. Groves, K.M., S. Basu, E. J. Weber, M. Smitham, H. Kuenzler, C.E. Valladares, R. Sheehan, E. MacKenzie, J.A. Secan, P. Ning, W.J. McNeill, D.W. Moonan, and M.J. Kendra (1997), Equatorial scintillation and systems support, Radio Science, 32, 2047-2064, doi:10.1029/97RS00836.
DOI: 10.5281/zenodo.3872432
title: SCINDA GPS and UHF data supporting analysis in "On the assessment of daily Equatorial Plasma Bubble occurrence modeling and forecasting"

description: This dataset consists of ionospheric scintillation data collected from August 1, 2013 until July 25, 2014 by a collection of GPS and UHF receiver stations in the Scintillation Network Decision Aid (SCINDA) network (Groves et al., 1997). This particular dataset supports the analysis conducted in Carter et al. (2020). <br> Carter, B.A., J.L. Currie, T. Dao, E. Yizengaw, J.M. Retterer, M. Terkildsen, K. Groves and R. Caton (2020), On the assessment of daily Equatorial Plasma Bubble occurrence modeling and forecasting, Submitted to Space Weather, Jun 2020. Groves, K.M., S. Basu, E. J. Weber, M. Smitham, H. Kuenzler, C.E. Valladares, R. Sheehan, E. MacKenzie, J.A. Secan, P. Ning, W.J. McNeill, D.W. Moonan, and M.J. Kendra (1997), Equatorial scintillation and systems support, Radio Science, 32, 2047-2064, doi:10.1029/97RS00836.
DOI: 10.6073/pasta/a2a71bf234450838eb505b0f829524ee
title: Nyack Floodplain RiverNet surface water and groundwater dissolved oxygen, conductivity, water level, and temperature Northwest Montana, USA, 2012-2019

description: Water dissolved oxygen, conductivity, temperature, and level from ten locations in the Nyack Floodplain of the Middle Fork of the Flathead River in Northwest Montana, USA. Measurements are made hourly for the period of 2012 to 2019. Six sensor are placed in groundwater wells and four are placed in surface water. Data have been cleaned to remove bad data and flag potentially anomalous observations.
DOI: 10.5281/zenodo.3871603
title: Raw diffraction data for [NiFeSe] hydrogenase pressurized with Kr gas - dataset wtKr1A

description: Diffraction data measured at ESRF beamline ID29 on October 2, 2017. Image files are uploaded in blocks of gzip-compressed cbf files.
description: This work was supported by grant PTDC/BBB-BEP/2885/2014 funded by Fundação para a Ciência e Tecnologia (FCT/MCTES), and by research unit MOSTMICRO (Project LISBOA-01-0145-FEDER-007660) cofunded by FCT/MCTES and FEDER funds through COMPETE2020 - Programa Operacional Competitividade e Internacionalização (POCI). SZ was recipient of fellowship SFRH/BD/100314/2014 from FCT/MCTES.