cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6742376
title: Additional file 11: of Unique sperm haplotypes are associated with phenotypically different sperm subpopulations in Astyanax fish

description: Data extracted from the ixo files; the data are in Excel files with the endpoint analyses for all the individuals in all the three subpopulations. (ZIP 128 kb)
DOI: 10.6084/m9.figshare.6742376.v1
title: Additional file 11: of Unique sperm haplotypes are associated with phenotypically different sperm subpopulations in Astyanax fish

description: Data extracted from the ixo files; the data are in Excel files with the endpoint analyses for all the individuals in all the three subpopulations. (ZIP 128 kb)
DOI: 10.6084/m9.figshare.6742370
title: Additional file 6: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S4. Genes that display significant differential splicing cross tissues. (XLSX 18699 kb)
DOI: 10.6084/m9.figshare.6742367
title: Additional file 5: of Identification and validation of single-sample breast cancer radiosensitivity gene expression predictors

description: Figure S1. Selection of top discrimination genes in the Illumina discovery cohort data. Number of genes in the random forest models are plotted against performance of classifying cases and controls, as measured by cross-validated area under the curve (AUC). The analysis was stratified for estrogen receptor (ER) status and radiotherapy (RT) treatment, and with added patients from other strata, based on a biological rationale as described in the text. (ZIP 171 kb)
DOI: 10.6084/m9.figshare.6742370.v1
title: Additional file 6: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S4. Genes that display significant differential splicing cross tissues. (XLSX 18699 kb)
DOI: 10.6084/m9.figshare.6742367.v1
title: Additional file 5: of Identification and validation of single-sample breast cancer radiosensitivity gene expression predictors

description: Figure S1. Selection of top discrimination genes in the Illumina discovery cohort data. Number of genes in the random forest models are plotted against performance of classifying cases and controls, as measured by cross-validated area under the curve (AUC). The analysis was stratified for estrogen receptor (ER) status and radiotherapy (RT) treatment, and with added patients from other strata, based on a biological rationale as described in the text. (ZIP 171 kb)
DOI: 10.6084/m9.figshare.6742349
title: Additional file 10: of Unique sperm haplotypes are associated with phenotypically different sperm subpopulations in Astyanax fish

description: Data extracted from the ixo files; the data are in Excel files with the endpoint analyses for all the individuals in all the three subpopulations. (ZIP 210 kb)
DOI: 10.6084/m9.figshare.6742352
title: Additional file 5: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S3. 2â Ă â 2 tables for the overlap between exon and intron analyses. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6742349.v1
title: Additional file 10: of Unique sperm haplotypes are associated with phenotypically different sperm subpopulations in Astyanax fish

description: Data extracted from the ixo files; the data are in Excel files with the endpoint analyses for all the individuals in all the three subpopulations. (ZIP 210 kb)
DOI: 10.6084/m9.figshare.6742352.v1
title: Additional file 5: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S3. 2â Ă â 2 tables for the overlap between exon and intron analyses. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6742340
title: Additional file 4: of Identification and validation of single-sample breast cancer radiosensitivity gene expression predictors

description: Table S3. Genes in the k-top scoring pairs predictors. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.6742340.v1
title: Additional file 4: of Identification and validation of single-sample breast cancer radiosensitivity gene expression predictors

description: Table S3. Genes in the k-top scoring pairs predictors. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.6742325
title: Additional file 4: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S2. Splicing junction annotation analysis using BAM files generated by different alignment software. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6742319
title: Additional file 3: of Identification and validation of single-sample breast cancer radiosensitivity gene expression predictors

description: Table S1. Genes included in the targeted 248-gene panel. (CSV 38 kb)
DOI: 10.6084/m9.figshare.6742325.v1
title: Additional file 4: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S2. Splicing junction annotation analysis using BAM files generated by different alignment software. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6742319.v1
title: Additional file 3: of Identification and validation of single-sample breast cancer radiosensitivity gene expression predictors

description: Table S1. Genes included in the targeted 248-gene panel. (CSV 38 kb)
DOI: 10.6084/m9.figshare.6742301
title: Additional file 3: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S1. RNA-seq reads mapped to different bovine genome origins. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6742301.v1
title: Additional file 3: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S1. RNA-seq reads mapped to different bovine genome origins. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6742256
title: Additional file 1: of The first next-generation sequencing approach to the mitochondrial phylogeny of African monogenean parasites (Platyhelminthes: Gyrodactylidae and Dactylogyridae)

description: Table S1. Annotation of the ribosomal operons of the four African monogenean species. (TXT 1 kb)
DOI: 10.6084/m9.figshare.6742256.v1
title: Additional file 1: of The first next-generation sequencing approach to the mitochondrial phylogeny of African monogenean parasites (Platyhelminthes: Gyrodactylidae and Dactylogyridae)

description: Table S1. Annotation of the ribosomal operons of the four African monogenean species. (TXT 1 kb)
DOI: 10.6084/m9.figshare.6742250
title: Additional file 12: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S10. SNP overlap between blood eeQTLs and putative causal variants identified by Littlejohn et al. [30]. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6742250.v1
title: Additional file 12: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S10. SNP overlap between blood eeQTLs and putative causal variants identified by Littlejohn et al. [30]. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6742241
title: Additional file 11: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S9. SNP overlap between expression QTLs and SNPs with pleiotropic effects on conventional traits of beef cattle. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.6742241.v1
title: Additional file 11: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S9. SNP overlap between expression QTLs and SNPs with pleiotropic effects on conventional traits of beef cattle. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.6742238
title: Additional file 3: of Prevalence and subtype distribution of Blastocystis sp. isolates from poultry in Lebanon and evidence of zoonotic potential

description: Clinical data collected from patients hospitalized at Hamidi Medical Center and Blastocystis sp. identification. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6742238.v1
title: Additional file 3: of Prevalence and subtype distribution of Blastocystis sp. isolates from poultry in Lebanon and evidence of zoonotic potential

description: Clinical data collected from patients hospitalized at Hamidi Medical Center and Blastocystis sp. identification. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6742223
title: Additional file 10: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S8. SNP overlap between expression QTLs and SNPs with pleiotropic effects on conventional traits of dairy cattle. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.6742223.v1
title: Additional file 10: of Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

description: Table S8. SNP overlap between expression QTLs and SNPs with pleiotropic effects on conventional traits of dairy cattle. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.6742211
title: Additional file 2: of Prevalence and subtype distribution of Blastocystis sp. isolates from poultry in Lebanon and evidence of zoonotic potential

description: Clinical data collected from slaughterhouse A staff members and Blastocystis sp. identification. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6742211.v1
title: Additional file 2: of Prevalence and subtype distribution of Blastocystis sp. isolates from poultry in Lebanon and evidence of zoonotic potential

description: Clinical data collected from slaughterhouse A staff members and Blastocystis sp. identification. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6742184
title: Additional file 1: of Gene expression polymorphism underpins evasion of host immunity in an asexual lineage of the Irish potato famine pathogen

description: This file contains Supplemental Table S1. to S15. and their legends. (XLSX 1698 kb)
DOI: 10.6084/m9.figshare.6742184.v1
title: Additional file 1: of Gene expression polymorphism underpins evasion of host immunity in an asexual lineage of the Irish potato famine pathogen

description: This file contains Supplemental Table S1. to S15. and their legends. (XLSX 1698 kb)
DOI: 10.6084/m9.figshare.6742169
title: MH_heatmap_mask

description: We want to use figshare for PeerJ.Title:Accuracy of deep learning, a machine-learning technology, using ultra-wideifield fundus ophthalmoscopy for detecting idiopathic macular holespaper No 26404
DOI: 10.6084/m9.figshare.6742166
title: MH_heatmap_nomask

description: We want to use figshare for PeerJ.Title:Accuracy of deep learning, a machine-learning technology, using ultra-wideifield fundus ophthalmoscopy for detecting idiopathic macular holespaper No 26404
DOI: 10.6084/m9.figshare.6742163
title: Normal_heatmap

description: We want to use figshare for PeerJ.Title:Accuracy of deep learning, a machine-learning technology, using ultra-wideifield fundus ophthalmoscopy for detecting idiopathic macular holespaper No 26404
DOI: 10.25374/mcri.6741941.v1
title: The Victorian Child's Lifecourse Journey in Data

description: The Victorian Child's Lifecourse Journey in Data maps data that is routinely or often collected in Victoria, Australia, across the lifespan from pre-conception to adulthood.<br>It aims to summarise a complex and changing landscape in a simple infographic and supporting table. This is version one and is correct to the best of our knowledge as of July 2018.
DOI: 10.6084/m9.figshare.6741908
title: Dataset for: A Comparison of Bias-Corrected Empirical Covariance Estimators with Generalized Estimating Equations in Small-Sample Longitudinal Study Settings

description: Data arising from longitudinal studies are commonly analyzed with generalized estimating equations (GEE). Previous literature has shown that liberal inference may result from the use of the empirical sandwich covariance matrix estimator when the number of subjects is small. Therefore, two different approaches have been used to improve the validity of inference. First, many different small-sample corrections to the empirical estimator have been offered in order to reduce bias in resulting standard error estimates. Second, critical values can be obtained from a t-distribution or F-distribution with approximated degrees of freedom. Although limited studies on the comparison of these small-sample corrections and degrees of freedom have been published, there is need for a comprehensive study of currently existing methods in a wider range of scenarios. Therefore, in this manuscript we conduct such a simulation study, finding two methods to attain nominal type I error rates more consistently than other methods in a variety of settings: First, a recently proposed method by Westgate and Burchett (2016, Statistics in Medicine 35, 3733-3744) that specifies both a covariance estimator and degrees of freedom, and second, an average of two popular corrections developed by Mancl and DeRouen (2001, Biometrics 57, 126-134) and Kauermann and Carroll (2001, Journal of the American Statistical Association 96, 1387-1396) with degrees of freedom equaling the number of subjects minus the number of parameters in the marginal model.
DOI: 10.6084/m9.figshare.6741908.v1
title: Dataset for: A Comparison of Bias-Corrected Empirical Covariance Estimators with Generalized Estimating Equations in Small-Sample Longitudinal Study Settings

description: Data arising from longitudinal studies are commonly analyzed with generalized estimating equations (GEE). Previous literature has shown that liberal inference may result from the use of the empirical sandwich covariance matrix estimator when the number of subjects is small. Therefore, two different approaches have been used to improve the validity of inference. First, many different small-sample corrections to the empirical estimator have been offered in order to reduce bias in resulting standard error estimates. Second, critical values can be obtained from a t-distribution or F-distribution with approximated degrees of freedom. Although limited studies on the comparison of these small-sample corrections and degrees of freedom have been published, there is need for a comprehensive study of currently existing methods in a wider range of scenarios. Therefore, in this manuscript we conduct such a simulation study, finding two methods to attain nominal type I error rates more consistently than other methods in a variety of settings: First, a recently proposed method by Westgate and Burchett (2016, Statistics in Medicine 35, 3733-3744) that specifies both a covariance estimator and degrees of freedom, and second, an average of two popular corrections developed by Mancl and DeRouen (2001, Biometrics 57, 126-134) and Kauermann and Carroll (2001, Journal of the American Statistical Association 96, 1387-1396) with degrees of freedom equaling the number of subjects minus the number of parameters in the marginal model.
DOI: 10.6084/m9.figshare.6741902
title: S1 file

description: Plasma bulb modeling and measurement
DOI: 10.6084/m9.figshare.6741902.v2
title: S1 file

description: Plasma bulb modeling and measurement
DOI: 10.6084/m9.figshare.6741896
title: S2 file

description: Ideal cold and hot state S11 data set compare with IML
DOI: 10.6084/m9.figshare.6741902.v1
title: Fig 2

description: Plasma bulb modeling and measurement
DOI: 10.6084/m9.figshare.6741893
title: Fig 5

description: Return losses (Fig 5a) and impedances (Fig 5b) of cold and hot states following impedance transformer implementation.<br>The 'Fig 5.txt' is raw data of Fig 5a and 5b.
DOI: 10.6084/m9.figshare.6741893.v2
title: Fig 5

description: Return losses (Fig 5a) and impedances (Fig 5b) of cold and hot states following impedance transformer implementation.<br>The 'Fig 5.txt' is raw data of Fig 5a and 5b.
DOI: 10.6084/m9.figshare.6741896.v2
title: S2 file

description: Ideal cold and hot state S11 data set compare with IML
DOI: 10.6084/m9.figshare.6741896.v1
title: Fig 5

description: Ideal cold and hot state S11 data set compare with IML
DOI: 10.6084/m9.figshare.6741881
title: Fig 2

description: Electrical model of plasma lamp (Fig 2a), and comparison of measured and simulated impedances (Fig 2b).<br>The Fig2.txt is raw data of Fig2b.
DOI: 10.6084/m9.figshare.6741887.v2
title: Fig 4

description: PLS test setup.
DOI: 10.6084/m9.figshare.6741881.v2
title: Fig 2

description: Electrical model of plasma lamp (Fig 2a), and comparison of measured and simulated impedances (Fig 2b).<br>The Fig2.txt is raw data of Fig2b.
DOI: 10.6084/m9.figshare.6741887.v3
title: Fig 4

description: PLS test setup.
DOI: 10.6084/m9.figshare.6741875
title: Fig 1

description: System block diagram of the electrodeless plasma lighting system.
DOI: 10.6084/m9.figshare.6741875.v2
title: Fig 1

description: System block diagram of the electrodeless plasma lighting system.
DOI: 10.6084/m9.figshare.6741857
title: Biological Switching Valve

description: 3D image of the spermathecal plates of a sex-role reversed cave insect genus Neotrogla. The data file is in Analyze format, which is compatible for FIJI (ImageJ) or ITK-SNAP.
DOI: 10.6084/m9.figshare.6741857.v1
title: Biological Switching Valve

description: 3D image of the spermathecal plates of a sex-role reversed cave insect genus Neotrogla. The data file is in Analyze format, which is compatible for FIJI (ImageJ) or ITK-SNAP.
DOI: 10.6084/m9.figshare.6741821
title: Motor Biases Do Not Account for the Low Prevalence Effect

description: Motor Bias experiments 1 and 2 data
DOI: 10.6084/m9.figshare.6741821.v1
title: Motor Biases Do Not Account for the Low Prevalence Effect

description: Motor Bias experiments 1 and 2 data
DOI: 10.17608/k6.auckland.6741794
title: INFORMAS Food Environments 2018 Executive Summary

description: Executive summary of INFORMAS food environment survey 2014-2017
DOI: 10.6084/m9.figshare.6741791
title: ICBO 2018 Formalizing the Representation of Immune Exposures for Human Immunology Studies

description: Supplemental Table 1<br>
DOI: 10.6084/m9.figshare.6741791.v1
title: ICBO 2018 Formalizing the Representation of Immune Exposures for Human Immunology Studies

description: Supplemental Table 1<br>
DOI: 10.6084/m9.figshare.6741734.v1
title: LSIE individual subjects full set

description: Individual subject folders for 49 subjects containing all raw data. Cortisol data for all subjects are combined in single Excel spreadsheet. UM_LSIE.xml is a study description document.
DOI: 10.6084/m9.figshare.6741728
title: Data of Resistance Exercise and Cardiometabolic Health in Caucasian and South Asian Males

description: Data from short-term resistance exercise training on cardio-metabolic health in Caucasian and South Asian males.
DOI: 10.6084/m9.figshare.6741728.v1
title: Data of Resistance Exercise and Cardiometabolic Health in Caucasian and South Asian Males

description: Data from short-term resistance exercise training on cardio-metabolic health in Caucasian and South Asian males.
DOI: 10.6084/m9.figshare.6741731
title: Short-Term Resistance Exercise and Cardiometabolic Health in Caucasian and South Asian Males

description: Legend - Demographic, anthropometric, blood pressure, muscular strength, and biochemical data from short term resistance exercise in Caucasian and South Asian males. Blank cells indicate a &gt;9% variance from duplicate measures with the exception of ADMA and L-arginine as a sub-sample (n=6 in both groups) was included in final analysis. PRE - Baseline; POST - post-intervention; BMI - Body Mass Index; FM - Fat Mass; FFM - Fat Free Mass; SBP - Systolic Blood Pressure; DBP - Diastolic Blood Pressure; MAP - Mean Arterial Pressure; Lower body - Lower Body Muscular Strength; Upper Body - Upper Body Muscular Strength; Trigs - Triglycerides; HDL - High Density Lipoprotein; LDL - Low Density Lipoprotein; TC - Total Cholesterol; VEGF - Vascular Endothelial Growth Factor; L-ARG - L-Arginine; ADMA - Asymmetric Dimethylarginine; CRP - C-reactive Protein; IR - Insulin Resistance. Blank cells indicate lack of data due to insufficient sample collection.
DOI: 10.6084/m9.figshare.6741716
title: Dataset.xlsx

description: Shared dataset for study named "<i>Monitoring the age-specificity of measles transmissions during 2009-2016 in southern China</i>"
DOI: 10.6084/m9.figshare.6741725
title: Data of Resistance Exercise and Cardiometabolic Health in Caucasian and South Asian Males

description: Data from the effects of short-term resistance exercise on cardio-metaboli biomarkers in Caucasian and South Asian males.
DOI: 10.6084/m9.figshare.6741725.v1
title: Data of Resistance Exercise and Cardiometabolic Health in Caucasian and South Asian Males

description: Data from the effects of short-term resistance exercise on cardio-metaboli biomarkers in Caucasian and South Asian males.
DOI: 10.6084/m9.figshare.6741713
title: Vision based online exercise monitoring system with visual feedback for stroke rehabilitation therapy

description: This is the material used for implementing and testing the system proposed in :"Vision based online exercise monitoring system with visual feedback for stroke rehabilitation therapy"<br>
DOI: 10.6084/m9.figshare.6741713.v1
title: Vision based online exercise monitoring system with visual feedback for stroke rehabilitation therapy

description: This is the material used for implementing and testing the system proposed in :"Vision based online exercise monitoring system with visual feedback for stroke rehabilitation therapy"<br>
DOI: 10.6084/m9.figshare.6741707.v1
title: CCETs.xz

description: R programming language saved file with Contrast Consensus Enriched Terms obtained by MIGSA for each contrast of the PAM50 breast cancer subtypes. Obtained from Haibe-Kains reported microarray datasets.
DOI: 10.6084/m9.figshare.6741698
title: HKdatasets.xz

description: R programming language saved file with 25 Haibe-Kains breast cancer microarray datasets.
DOI: 10.6084/m9.figshare.6741698.v1
title: HKdatasets.xz

description: R programming language saved file with 25 Haibe-Kains breast cancer microarray datasets.
DOI: 10.6084/m9.figshare.6741695
title: TCGAres.xz

description: R programming language saved file with MIGSA results for TCGA breast cancer cohorts.
DOI: 10.6084/m9.figshare.6741689
title: HKres.xz

description: R programming language saved file with MIGSA results for Haibe-Kains breast cancer datasets.
DOI: 10.6084/m9.figshare.6741695.v1
title: TCGAres.xz

description: R programming language saved file with MIGSA results for TCGA breast cancer cohorts.
DOI: 10.6084/m9.figshare.6741686
title: TCGAcohorts.xz

description: R programming language saved file with TCGA breast cancer dataset, 97 subjects sharing RNA-Seq, microarray, and iTRAQ data.
DOI: 10.6084/m9.figshare.6741689.v1
title: HKres.xz

description: R programming language saved file with MIGSA results for Haibe-Kains breast cancer datasets.
DOI: 10.6084/m9.figshare.6741686.v1
title: TCGAcohorts.xz

description: R programming language saved file with TCGA breast cancer dataset, 97 subjects sharing RNA-Seq, microarray, and iTRAQ data.
DOI: 10.6084/m9.figshare.6741620.v1
title: BA.xlsx

description: the raw data and the pictures used in the article "<b>Effects of capsaicin-induced sensory denervation on </b><b>early implant osseointegration in adult rats"</b><b></b>
DOI: 10.6084/m9.figshare.6741518
title: Cohen et al. 2018 Molecular Ecology Haemoplasmas in wild rodents routes of transmission and infection dynamics: Raw Data

description: Raw data belongs to the publication: "Cohen et al. Haemoplasmas in wild rodents: routes of transmission and infection dynamics" Molecular Ecology, 2018
DOI: 10.6084/m9.figshare.6741518.v1
title: Cohen et al. 2018 Molecular Ecology Haemoplasmas in wild rodents routes of transmission and infection dynamics Raw Data

description: Rw data belonging to the publication "Cohen et al. 2018. Haemoplasmas in wild rodents routes of transmission and infection dynamics. Molecular Ecology"
DOI: 10.6084/m9.figshare.6741518.v2
title: Cohen et al. 2018 Molecular Ecology Haemoplasmas in wild rodents routes of transmission and infection dynamics: Raw Data

description: Raw data belongs to the publication: "Cohen et al. Haemoplasmas in wild rodents: routes of transmission and infection dynamics" Molecular Ecology, 2018