cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3603545_d4.v1
title: Additional file 5: Table S5: of QTL underlying some agronomic traits in barley detected by SNP markers

description: Putative QTLs for 10 agronomic traits through multiple environments QTL mapping. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.c.3603536_d5.v1
title: Additional file 5: Table S5. of Efficient generation of patient-matched malignant and normal primary cell cultures from clear cell renal cell carcinoma patients: clinically relevant models for research and personalized medicine

description: Differentially expressed genes between VHLmut and VHLwt cell cultures. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3603545_d5.v1
title: Additional file 2: Table S2: of QTL underlying some agronomic traits in barley detected by SNP markers

description: Correlation coefficients among the 10 observed agronomic traits. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3603536_d6.v1
title: Additional file 1: Table S1. of Efficient generation of patient-matched malignant and normal primary cell cultures from clear cell renal cell carcinoma patients: clinically relevant models for research and personalized medicine

description: Clinical characteristics of samples used to generate cell lines. (XLS 36 kb)
DOI: 10.6084/m9.figshare.c.3603536_d7.v1
title: Additional file 3: Table S3. of Efficient generation of patient-matched malignant and normal primary cell cultures from clear cell renal cell carcinoma patients: clinically relevant models for research and personalized medicine

description: Summary of cell cultures established. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3603542_d6.v1
title: Additional file 1: of Genome-wide profiling of 24Â hr diel rhythmicity in the water flea, Daphnia pulex: network analysis reveals rhythmic gene expression and enhances functional gene annotation

description: JTK_CYCLE and network analysis results. The spreadsheet shows, for each D. pulex gene: 1) Gene annotations 2) JTK_CYCLE derived statistics, 3) network analysis rhythmic gene predictions and statistics, and 4) network analysis functional annotations, predictions, and statistics. (XLSX 1853Â kb)
DOI: 10.6084/m9.figshare.c.3603566_d1.v1
title: MOESM6 of A method for detecting single mRNA molecules in Arabidopsis thaliana

description: Additional File 6. Raw data for PP2A mRNA and nascent counts.
DOI: 10.6084/m9.figshare.c.3603686_d2.v1
title: MOESM1 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population

description: Additional file 1. PCR conditions and primer sequences for the gene regions analysed in the 15 merozoite genes.
DOI: 10.6084/m9.figshare.c.3603689_d2.v1
title: Additional file 2: of Comparative genomic analysis of retrogene repertoire in two green algae Volvox carteri and Chlamydomonas reinhardtii

description: Detailed information on all predicted retrogene candidates. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3603686_d3.v1
title: MOESM5 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population

description: Additional file 5. SNPs and repeat region frequencies within the 15 merozoite genes from the uncomplicated malaria infections in 2007 and 2008 to identify significant SNPs.
DOI: 10.6084/m9.figshare.c.3603689_d3.v1
title: Additional file 3: of Comparative genomic analysis of retrogene repertoire in two green algae Volvox carteri and Chlamydomonas reinhardtii

description: Predicted functions (GO terms) of the retrogene candidates. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3603698_d2.v1
title: Additional file 3 of Estimating transmission probability in schools for the 2009 H1N1 influenza pandemic in Italy

description: Files of data on school B. Explanations as for school A. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3603686_d5.v1
title: MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population

description: Additional file 4. Linkage disequilibrium (LD) analysis of all high frequency (&gt;5%) SNPs in all 15 merozoite genes, except eba181 due to limited SNP data. The analysis was performed by conducting all possible pair-wise comparisons between all the SNPs across 14 merozoite genes using a pair-wise correlation analysis and a Bonferroni correction for multiple comparisons. The red boxes represent significant correlations between SNPs and thus SNPs in LD, orange represents correlations between SNPs that are not significant, white indicates the SNPs that are not correlated and therefore they are not in LD and grey represents cases where the SNP data is missing in one or both of the paired SNPs.
DOI: 10.6084/m9.figshare.c.3603797_d2.v1
title: Additional file 2: of A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits

description: SNPs used for the construction of the IL population. Background SNPs Sequenom-HRM: These were selected from those previously mapped in the melon genetic map used to anchor the first version of the melon genome [9]. The map position is indicated according to the map used to anchor the genome [9] as well as a new version of the genetic map [11]. The physical position in the last version of the melon genome (v3.5.1) available at [10] is indicated. The SNP and flanking sequence is included for all the markers used in the Sequenom assay, and the primers for those that were adapted to the HRM genotyping procedure are also provided. Markers that could not be accurately called in the Sequenom assay and that failed to show the expected polymorphism between the IL parents (VED and MAK) are marked as failed markers (f). SNPs in candidates: Additional set of SNPs located in candidate genes reported to be involved in sugar and ethylene metabolism. These markers were validated in [8] and had been generated in a previous resequencing study, using VED and MAK among other melon genotypes [3]. The physical position in the last version of the melon genome (v3.5.1) available at [10] is indicated. The SNP and flanking sequence is included for all the markers used in the Sequenom assay. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3603800_d1.v1
title: Additional file 1: Table S1. of Ant mediated redistribution of a xyloglucanase enzyme in fungus gardens of Acromyrmex echinatior

description: List of qPCR primers used in this study, including primer sequences, annealing temperatures and fragment lengths in base pairs. Table S2. qPCR results of Xeg1, Ubc and GAPDH, for the two different fungal tissues, gongylidia and mycelium. Table S3. qPCR results of Xeg1, Ubc and GAPDH, for the top, middle and bottom layers and debris material from ant fungus gardens. Table S4. Xyloglucanase enzyme activity data for ant fecal fluid. Table S5. Xyloglucanase enzyme activity data for the top, middle and bottom layers and debris material from ant fungus gardens. (XLSX 28 kb)
DOI: 10.15468/dl.ht3a5x
title: Occurrence Download

description: A dataset containing 920 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PhylumKey is one of (Bryophyta, Marchantiophyta, Anthocerotophyta)",
 "GadmGid is CAN.5.2_1"
 ]
}

 The dataset includes 920 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037676-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3603797_d3.v1
title: Additional file 6: of A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits

description: Correlation coefficient (p
DOI: 10.6084/m9.figshare.c.3603815_d1.v1
title: Additional file 6: Table S4. of CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems

description: GHs differentially expressed in enriched microbial consortium from cattle rumen microbiome between day 3 and day 5. (XLSX 349 kb)
DOI: 10.6084/m9.figshare.c.3603818_d1.v1
title: Additional file 1: of Verification of microRNA expression in human endometrial adenocarcinoma

description: Pick-&-Mix microRNA PCR panel list. (XLS 30 kb)
DOI: 10.6084/m9.figshare.c.3603797_d4.v1
title: Additional file 3: of A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits

description: Graphical genotype of the 27 ILs selected in this study for agronomic characterization in three trials. Rows from top to bottom: marker names, melon chromosome, genetic position according to [9] for the background markers (the SNPs located in candidate genes are not mapped and are located according to their physical position indicated in Additional file 2), and the SNP allele (VED/MAK). Green boxes indicate MAK homozygous introgressions, and blue lines VED genetic background. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3603818_d2.v1
title: Additional file 2: of Verification of microRNA expression in human endometrial adenocarcinoma

description: Normalized expression values. (XLS 71 kb)
DOI: 10.6084/m9.figshare.c.3603797_d5.v1
title: Additional file 5: of A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits

description: List of all QTLs detected with the Dunnet’s test in at least two of the three trials performed with the selected IL collection. Abbreviated trait name as in Additional file 4, QTL name, chromosome, QTL position (cM) and flanking markers, according to the phenotype of overlapping lines, number of trials in which the QTL was detected, MAK effect relative to the VED parental (%) with positive/negative effects indicating that MAK alleles increase/decrease the value of the trait, IL introgression position (cM) and flanking markers. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3603881_d10.v1
title: Additional file 15: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: Details of primers used in ChIP-seq validation. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3603947_d1.v1
title: MOESM3 of Enhancing antibody folding and secretion by tailoring the Saccharomyces cerevisiae endoplasmic reticulum

description: Additional file 3. Screening results for all the strains with double gene additions grouped by strain background, temperature and induction strength. First, the values for the background strain standards are listed, to which the normalization is done always using the reference from the same condition. [AB] stands for antibody titer and SD for standard deviation and specific product yield is defined as [AB]/OD600. The values are means from three biological and two technical replicates.
DOI: 10.6084/m9.figshare.c.3603953_d1.v1
title: Additional file 9: Table S4. of Comparative transcriptome investigation of global gene expression changes caused by miR156 overexpression in Medicago sativa

description: Primers used in this study. All the primers used in this study, including for PCR, qRT-PCR and gene cloning. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3603881_d11.v1
title: Additional file 13: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: Details of primers used to validate microarray. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3603947_d2.v1
title: MOESM1 of Enhancing antibody folding and secretion by tailoring the Saccharomyces cerevisiae endoplasmic reticulum

description: Additional file 1. Results from the screening process for all the strains with single gene additions, divided by the different experimental conditions. Values without defined gene or promoter are the strain background measurements for each conditions. The normalization of samples is always done to the background strain values from the same condition. Specific product yield is defined as antibody titer (denoted [AB]) divided by OD600-value. SD is an abbreviation for standard deviation. The values are means from three biological and two technical replicates.
DOI: 10.6084/m9.figshare.c.3603881_d12.v1
title: Additional file 14: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: Details of primers used in ChIP-qPCR for the epo -HRE. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3603947_d3.v1
title: MOESM6 of Enhancing antibody folding and secretion by tailoring the Saccharomyces cerevisiae endoplasmic reticulum

description: Additional file 6. List of oligonucleotides used in this study. All sequences of oligonucleotides used in this work are shown. Oligonucleotides 1â  6 are for DNA integration into the yeast genome and for its confirmation. 7â  14 were used for placement of PPDI1 and PKAR2 into the vector backbone, 15â  36 were used for generation of the overexpression plasmids of the various folding factors. Finally 37 and 38 were used for ACT1 qPCR.
DOI: 10.6084/m9.figshare.c.3603881_d13.v1
title: Additional file 12: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: The overlap between non-HRE ChIP peaks in vhl mutant and wild-type samples. Filtering performed manually using the RCGTG motif. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3603953_d4.v1
title: Additional file 3: Table S3. of Comparative transcriptome investigation of global gene expression changes caused by miR156 overexpression in Medicago sativa

description: Full list of the components included in cellular component, biological process and molecular function. The full list of the GO terms that correspond to the differentially expressed genes in two genotypes of miR156OE alfalfa plants compared to WT. (XLSX 16Â kb)
DOI: 10.15468/dl.v4esf2
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-120 -60,-25 -60,-25 30,-120 30,-120 -60))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anolis ortonii Cope, 1868"
 ]
}

 The dataset includes 271 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037677-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3603947_d4.v1
title: MOESM4 of Enhancing antibody folding and secretion by tailoring the Saccharomyces cerevisiae endoplasmic reticulum

description: Additional file 4. Overview of the mean fold-changes for all the strains with double gene additions. For each analyzed gene pair the mean fold-changes in OD600, in IgG titer, and in specific product yield are shown. Averages were calculated from fold-changes that were first compared to the respective wild-type samples.
DOI: 10.15468/dl.cndvnk
title: Occurrence Download

description: A dataset containing 131191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Procyon lotor (Linnaeus, 1758)"
 ]
}

 The dataset includes 131191 records from 466 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037672-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3603962_d1.v1
title: Additional file 1: Table S1. of Identification of prohormones and pituitary neuropeptides in the African cichlid, Astatotilapia burtoni

description: Location and accession numbers of identified A. burtoni prohormone and related genes. Genome scaffold locations and identities of supporting transcriptome data for all predicted A. burtoni prohormones and protein convertases. (CSV 27Â kb)
DOI: 10.6084/m9.figshare.c.3603881_d14.v1
title: Additional file 3: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

description: The complete list of gene ontology terms found by DAVID. Using data found in Additional file 2, DAVID was used to assign gene ontology to genes using the Agilent zebrafish background and Unigene ID as identifier. Number of genes associate with each term, p-value and Benjamini correction are shown. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3603953_d5.v1
title: Additional file 2: Table S2. of Comparative transcriptome investigation of global gene expression changes caused by miR156 overexpression in Medicago sativa

description: Differentially expressed genes with significant fold change detected between WT and two miR156OE genotypes (A11and A17). Differentially expressed genes between WT and the two miR156OE genotypes A11a and A17. (XLSX 1067Â kb)
DOI: 10.6084/m9.figshare.c.3604028_d9.v1
title: Additional file 6: Table S4. of Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

description: Account of species displaying recCHS, ESV or CV chitin synthases (tab 1) and account detail of recCHS, ESV and CV sequences in these species (tab 2). (XLSX 15 kb)
DOI: 10.15468/dl.74nyfe
title: Occurrence Download

description: A dataset containing 804635 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "GadmGid is ITA.13_1"
 ]
}

 The dataset includes 804635 records from 431 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037673-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604067_d2.v1
title: Additional file 1: of Understanding clinical and non-clinical decisions under uncertainty: a scenario-based survey

description: Sample salting questions as portrayed on the screen of the individual participants: control (1A) and probabilistic (1B) versions. Red arrow depicts addition of explicit probability information for probability scenarios (1B). Actual temperature was displayed each day, after decision to salt or not had been made (1C). (ZIP 71Â kb)
DOI: 10.6084/m9.figshare.c.3604028_d10.v1
title: Additional file 3: Table S3. of Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

description: Account of all chitin synthase encoding sequences in the genomes of species included in this study. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.c.3604064_d3.v1
title: Additional file 2: Table S1: of Disrupted ADP-ribose metabolism with nuclear Poly (ADP-ribose) accumulation leads to different cell death pathways in presence of hydrogen peroxide in procyclic Trypanosoma brucei

description: PARP inhibitor like compounds tested. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3604028_d11.v1
title: Additional file 18: File S3. of Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

description: ML phylogeny used to place the root in Fig. 5. (TXT 6 kb)
DOI: 10.6084/m9.figshare.c.3604079_d1.v1
title: Additional file 1: of Thigh abscess and necrotizing fasciitis following an inside-out transobturator tape intervention: a case report

description: Laboratory abnormalyties during patient care. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3604163_d1.v1
title: Additional file 5: of More comprehensive forensic genetic marker analyses for accurate human remains identification using massively parallel DNA sequencing

description: Human identity SNP results for 140-year-old skeletal remains from Deadwood, Dakota using the: A) Illumina® ForenSeq™ DNA Signature Prep Kit and B) HID-Ion AmpliSeq™ Identity Panel (E1 = elution #1; E2 = elution #2). Eighty of the human identity SNPs were common between the two panels (shown in bold). Concordant results were used to generate a composite profile (C). (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3604163_d2.v1
title: Additional file 1: of More comprehensive forensic genetic marker analyses for accurate human remains identification using massively parallel DNA sequencing

description: Y-SNP data for three different bone powder fractions using the HID-Ion AmpliSeq™ Identity Panel and the Ion Torrent PGM® MPS platform (E1 = elution #1; E2 = elution #2). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3604163_d3.v1
title: Additional file 7: of More comprehensive forensic genetic marker analyses for accurate human remains identification using massively parallel DNA sequencing

description: X-STR typing results for 140-year-old skeletal remains from Deadwood, South Dakota using the Illumina® ForenSeq™ DNA Signature Prep Kit and MiSeq® MPS platform (E1 = elution #1; E2 = elution #2). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3604163_d5.v1
title: Additional file 4: of More comprehensive forensic genetic marker analyses for accurate human remains identification using massively parallel DNA sequencing

description: Phenotype-informative SNP analysis results for 140-year-old skeletal remains from Deadwood, Dakota using the: A) Illumina® ForenSeq™ DNA Signature Prep Kit and B) HID-Ion AmpliSeq™ Externally Visible Characteristics (EVC) Prototype Panel (E1 = elution #1; E2 = elution #2). Concordant results were used to generate a composite profile (C). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3604163_d6.v1
title: Additional file 6: of More comprehensive forensic genetic marker analyses for accurate human remains identification using massively parallel DNA sequencing

description: Autosomal STR typing results for 140-year-old skeletal remains from Deadwood, Dakota using the Illumina® ForenSeq™ DNA Signature Prep Kit and MiSeq® MPS platform (E1 = elution #1; E2 = elution #2). (XLSX 12 kb)
DOI: 10.7488/ds/7522
title: GWAS summary statistics pertaining to the publication: " The genetic landscape of neuro-related proteins in human plasma"

description: Understanding the genetic basis of neuro-related proteins is essential for dissecting the molecular basis of human behavioral traits and the disease etiology of neuropsychiatric disorders. Here, the SCALLOP Consortium conducted a genome-wide association meta-analysis of over 12,500 individuals for 184 neuro-related proteins in human plasma. The analysis identified 125 cis-regulatory protein quantitative trait loci (cis-pQTL) and 164 trans-pQTL. The mapped pQTL capture on average 50\% of each protein's heritability. Mendelian randomization analyses revealed multiple proteins showing potential causal effects on human behavioral traits such as alcohol and food intake, smoking, and educational attainment, as well as neurological conditions and psychiatric disorders such as pain, neuroticism, and schizophrenia. Integrating with established drug information, the causal inference analysis validated 52 out of 66 matched combinations of protein targets and diseases or side effects with available drugs, while suggesting hundreds of re-purposing and new therapeutic targets. This consortium effort provides a large-scale proteogenomic resource for biomedical research on human behaviors and other neuro-related phenotypes.
DOI: 10.15468/dl.9jzmx9
title: Occurrence Download

description: A dataset containing 2499050022 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2000-2024"
 ]
}

 The dataset includes 2499050022 records from 48459 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037636-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0ftmd8
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xenops minutus alagoanus"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011311-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.