cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6234599.v1
title: Additional file 20: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S13. Conserved miRNAs during reproductive development in monocot and dicot plants. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6234590
title: Additional file 5: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

description: List of 50 differentially methylated probes unique to boys, pre- and post-puberty (FDRâ =â 5%). (XLSX 48 kb)
DOI: 10.6084/m9.figshare.6234590.v1
title: Additional file 5: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

description: List of 50 differentially methylated probes unique to boys, pre- and post-puberty (FDRâ =â 5%). (XLSX 48 kb)
DOI: 10.6084/m9.figshare.6234587
title: Additional file 1: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S1. The primers used for qRT-PCR in this study. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6234587.v1
title: Additional file 1: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S1. The primers used for qRT-PCR in this study. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6234578
title: Additional file 4: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

description: List of 347 differentially methylated probes unique to girls, pre- and post-puberty (FDRâ =â 5%). (XLSX 82 kb)
DOI: 10.6084/m9.figshare.6234578.v1
title: Additional file 4: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

description: List of 347 differentially methylated probes unique to girls, pre- and post-puberty (FDRâ =â 5%). (XLSX 82 kb)
DOI: 10.6084/m9.figshare.6234557
title: Additional file 3: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

description: List of 48 differentially methylated probes in boys and girls, pre- and post-puberty (FDRâ =â 5%). (XLSX 47 kb)
DOI: 10.6084/m9.figshare.6234557.v1
title: Additional file 3: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

description: List of 48 differentially methylated probes in boys and girls, pre- and post-puberty (FDRâ =â 5%). (XLSX 47 kb)
DOI: 10.6084/m9.figshare.6234539
title: Additional file 17: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S12. List of identified targets of differentially expressed miRNAs which were obtained from comparative analysis of SL1 and NN1, SL1 and NN1 together. (XLSX 53Â kb)
DOI: 10.6084/m9.figshare.6234539.v1
title: Additional file 17: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S12. List of identified targets of differentially expressed miRNAs which were obtained from comparative analysis of SL1 and NN1, SL1 and NN1 together. (XLSX 53Â kb)
DOI: 10.6084/m9.figshare.6234521
title: Additional file 16: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S11. List of all identified target genes for miRNAs from degradome sequencing. (XLSX 158Â kb)
DOI: 10.6084/m9.figshare.6234521.v1
title: Additional file 16: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S11. List of all identified target genes for miRNAs from degradome sequencing. (XLSX 158Â kb)
DOI: 10.6084/m9.figshare.6234515
title: Additional file 15: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S10. Summary data of degradome sequencing. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6234515.v1
title: Additional file 15: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S10. Summary data of degradome sequencing. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6234488
title: Additional file 13: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S9. The miRNAs were divided into 6 categories based on expression pattern at MMC and MP stages. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6234488.v1
title: Additional file 13: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S9. The miRNAs were divided into 6 categories based on expression pattern at MMC and MP stages. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6234485
title: Additional file 1: of Setting the pace: host rhythmic behaviour and gene expression patterns in the facultatively symbiotic cnidarian Aiptasia are determined largely by Symbiodinium

description: Expression, description and annotation of genes presnted and anlysed. (XLSX 9383Â kb)
DOI: 10.6084/m9.figshare.6234485.v1
title: Additional file 1: of Setting the pace: host rhythmic behaviour and gene expression patterns in the facultatively symbiotic cnidarian Aiptasia are determined largely by Symbiodinium

description: Expression, description and annotation of genes presnted and anlysed. (XLSX 9383Â kb)
DOI: 10.6084/m9.figshare.6234485.v2
title: Additional file 1: of Setting the pace: host rhythmic behaviour and gene expression patterns in the facultatively symbiotic cnidarian Aiptasia are determined largely by Symbiodinium

description: Expression, description and annotation of genes presnted and anlysed. (XLSX 9383Â kb)
DOI: 10.6084/m9.figshare.6234470
title: Additional file 12: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S8. Details of differentially expressed known and novel miRNAs in NN2 and SL2 plants. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6234470.v1
title: Additional file 12: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S8. Details of differentially expressed known and novel miRNAs in NN2 and SL2 plants. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6234455
title: Additional file 11: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S7. Details of differentially expressed known and novel miRNAs in NN1 and SL1 plants. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6234455.v1
title: Additional file 11: of Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

description: Table S7. Details of differentially expressed known and novel miRNAs in NN1 and SL1 plants. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6234443
title: Additional file 1: of Hidden MHC genetic diversity in the Iberian ibex (Capra pyrenaica)

description: Nexus file of the phylogenetic alignment. (ZIP 1 kb)
DOI: 10.6084/m9.figshare.6234443.v1
title: Additional file 1: of Hidden MHC genetic diversity in the Iberian ibex (Capra pyrenaica)

description: Nexus file of the phylogenetic alignment. (ZIP 1 kb)
DOI: 10.6084/m9.figshare.6234431
title: Additional file 1 of Tensor decomposition-based and principal-component-analysis-based unsupervised feature extraction applied to the gene expression and methylation profiles in the brains of social insects with multiple castes

description: Genes selected by PCA- and TD-based unsupervised FE. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6234431.v1
title: Additional file 1 of Tensor decomposition-based and principal-component-analysis-based unsupervised feature extraction applied to the gene expression and methylation profiles in the brains of social insects with multiple castes

description: Genes selected by PCA- and TD-based unsupervised FE. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6234410
title: Additional file 2 of On the rank-distance median of 3 permutations

description: Example of numerical unstability of “triple-null” formula in the Implementation section. This Additional file, in text format suitable to be read by Octave or MATLAB, contains three 100×100 matrices A,B, and C for which the triple-null formula does not work, and the alternative single-null formula for the intersection im ( A − B ) ∩ im ( C − B ) $\text {im}(A-B) \cap \text {im}(C-B)$ was used. The file can be checked in Octave as follows: Save it as triple.mat, Call Octave, and then type in its prompt: &gt; load(“triple.mat”) &gt; meet = null([(null(A’-B’))’;(null(C’-B’))’]); &gt; size(meet) ans = 100 0 &gt; meet = orth((A-B)*null([A-B C-B])(1:100,:)); &gt; size(meet) ans = 100 2 This shows that, while the first formula produced a zero-dimensional subspace, the second one actually produced a 2-dimensional subspace. (MAT 222 kb)
DOI: 10.6084/m9.figshare.6234410.v1
title: Additional file 2 of On the rank-distance median of 3 permutations

description: Example of numerical unstability of “triple-null” formula in the Implementation section. This Additional file, in text format suitable to be read by Octave or MATLAB, contains three 100×100 matrices A,B, and C for which the triple-null formula does not work, and the alternative single-null formula for the intersection im ( A − B ) ∩ im ( C − B ) $\text {im}(A-B) \cap \text {im}(C-B)$ was used. The file can be checked in Octave as follows: Save it as triple.mat, Call Octave, and then type in its prompt: &gt; load(“triple.mat”) &gt; meet = null([(null(A’-B’))’;(null(C’-B’))’]); &gt; size(meet) ans = 100 0 &gt; meet = orth((A-B)*null([A-B C-B])(1:100,:)); &gt; size(meet) ans = 100 2 This shows that, while the first formula produced a zero-dimensional subspace, the second one actually produced a 2-dimensional subspace. (MAT 222 kb)
DOI: 10.6084/m9.figshare.6234383
title: Additional file 1: of A child with multiple congenital anomalies due to partial trisomy 7q22.1â â â qter resulting from a maternally inherited balanced translocation: a case report and review of literature

description: SNP array datasheet of the proband and the parents. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.6234383.v1
title: Additional file 1: of A child with multiple congenital anomalies due to partial trisomy 7q22.1â â â qter resulting from a maternally inherited balanced translocation: a case report and review of literature

description: SNP array datasheet of the proband and the parents. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.6234374
title: Additional file 9: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

description: Table S8. Results of linear mixed-effects models on microRNA qPCR data, including tests for a relation to Treatment, Psychomotor Vigilance Test (PVT), and Time of Day. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6234374.v1
title: Additional file 9: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

description: Table S8. Results of linear mixed-effects models on microRNA qPCR data, including tests for a relation to Treatment, Psychomotor Vigilance Test (PVT), and Time of Day. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6234356
title: Additional file 2: of Identifying low test-taking effort during low-stakes tests with the new Test-taking Effort Short Scale (TESS) – development and psychometrics

description: Raw data with all variables used in this study. (XLSX 150 kb)
DOI: 10.6084/m9.figshare.6234356.v1
title: Additional file 2: of Identifying low test-taking effort during low-stakes tests with the new Test-taking Effort Short Scale (TESS) – development and psychometrics

description: Raw data with all variables used in this study. (XLSX 150 kb)
DOI: 10.6084/m9.figshare.6234353
title: Additional File 8:

description: Table S7. Results of Ingenuity Pathway AnalysisÂŽ Causal Networks as run on the PVT list. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6234353.v1
title: Additional File 8:

description: Table S7. Results of Ingenuity Pathway AnalysisÂŽ Causal Networks as run on the PVT list. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6234338
title: Additional File 7:

description: Table S6. Results of Ingenuity Pathway AnalysisÂŽ Causal Networks as run on the Treatment list. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.6234338.v1
title: Additional File 7:

description: Table S6. Results of Ingenuity Pathway AnalysisÂŽ Causal Networks as run on the Treatment list. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.6234326
title: Additional file 9 of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S6. Donor demographics. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.6234326.v1
title: Additional file 9 of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S6. Donor demographics. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.6234320
title: Additional file 6: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

description: Table S5. WGCNA module membership for all Transcript Clusters passing the low-expression threshold. Correlation coefficients (r) and P-values are given for the Pearson correlation between each Transcript Cluster and each of three variables: Treatment, PVT lapses, and Time of Day. Annotations are taken from the Affymetrix batch NetAffxâ ˘ tool, with /// separating multiple annotations given to the same Transcript Cluster. (XLSX 2732Â kb)
DOI: 10.6084/m9.figshare.6234314
title: Additional file 3: of A boy with developmental delay and mosaic supernumerary inv dup(5)(p15.33p15.1) leading to distal 5p tetrasomy â case report and review of the literature

description: Table S3. Comparison of phenotypes caused by distal 5p tetrasomy, i(5)(p10) and dup5p13.2. (XLS 42Â kb)
DOI: 10.6084/m9.figshare.6234320.v1
title: Additional file 6: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

description: Table S5. WGCNA module membership for all Transcript Clusters passing the low-expression threshold. Correlation coefficients (r) and P-values are given for the Pearson correlation between each Transcript Cluster and each of three variables: Treatment, PVT lapses, and Time of Day. Annotations are taken from the Affymetrix batch NetAffxâ ˘ tool, with /// separating multiple annotations given to the same Transcript Cluster. (XLSX 2732Â kb)
DOI: 10.6084/m9.figshare.6234314.v1
title: Additional file 3: of A boy with developmental delay and mosaic supernumerary inv dup(5)(p15.33p15.1) leading to distal 5p tetrasomy â case report and review of the literature

description: Table S3. Comparison of phenotypes caused by distal 5p tetrasomy, i(5)(p10) and dup5p13.2. (XLS 42Â kb)
DOI: 10.6084/m9.figshare.6234311
title: Additional file 8: of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S5. Pathways with corrected PÂ
DOI: 10.6084/m9.figshare.6234311.v1
title: Additional file 8: of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S5. Pathways with corrected PÂ
DOI: 10.6084/m9.figshare.6234299
title: Additional file 5: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

description: Table S4. List of Psychomotor Vigilance Test (PVT) effect Transcript Clusters with P-value and FDR for the PVT effect, Mfuzz PVT group, and annotations from the NetAffxâ ˘ batch annotation tool. Notes on gene family, comments, and mRNA assignment are from review of Affymetrix annotation package (HuGene-1_0-st-v1.na35.hg19.probeset.csv) for Transcript Cluster IDs without gene level (e.g., title) annotation or with mixed hybridization targets. Mixed hybridization targets suggest the potential for the Transcript Cluster to be associated with more than one gene. Three slashes designate multiple annotations associated with the same Transcript Cluster. Genes also found in the Treatment list are noted. Column human blood designates whether or not the gene was found in an IPAÂŽ biomarker screen for genes detectable in human blood. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.6234299.v1
title: Additional file 5: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

description: Table S4. List of Psychomotor Vigilance Test (PVT) effect Transcript Clusters with P-value and FDR for the PVT effect, Mfuzz PVT group, and annotations from the NetAffxâ ˘ batch annotation tool. Notes on gene family, comments, and mRNA assignment are from review of Affymetrix annotation package (HuGene-1_0-st-v1.na35.hg19.probeset.csv) for Transcript Cluster IDs without gene level (e.g., title) annotation or with mixed hybridization targets. Mixed hybridization targets suggest the potential for the Transcript Cluster to be associated with more than one gene. Three slashes designate multiple annotations associated with the same Transcript Cluster. Genes also found in the Treatment list are noted. Column human blood designates whether or not the gene was found in an IPAÂŽ biomarker screen for genes detectable in human blood. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.6234293
title: Additional file 2: of A boy with developmental delay and mosaic supernumerary inv dup(5)(p15.33p15.1) leading to distal 5p tetrasomy â case report and review of the literature

description: Table S2. Comparison of clinical features of patients with 5p tetrasomies. (XLS 41Â kb)
DOI: 10.6084/m9.figshare.6234293.v1
title: Additional file 2: of A boy with developmental delay and mosaic supernumerary inv dup(5)(p15.33p15.1) leading to distal 5p tetrasomy â case report and review of the literature

description: Table S2. Comparison of clinical features of patients with 5p tetrasomies. (XLS 41Â kb)
DOI: 10.6084/m9.figshare.6234281
title: Additional file 4: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

description: Table S3. Comparison of Treatment and PVT lists, based on the first gene symbol listed for each Transcript Cluster, with datasets from literature. Worksheet tab â Summaryâ presents the numbers of genes found in common between the Treatment and PVT lists with published datasets. Subsequent worksheet tabs provide detailed comparisons for individual published datasets. Identification of a match required finding the exact same gene symbol in published datasets as the first listed gene symbol in the Treatment and PVT list. Thus, overlap may be underestimated if different annotations were given to the same gene. (XLSX 96Â kb)
DOI: 10.6084/m9.figshare.6234281.v1
title: Additional file 4: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

description: Table S3. Comparison of Treatment and PVT lists, based on the first gene symbol listed for each Transcript Cluster, with datasets from literature. Worksheet tab â Summaryâ presents the numbers of genes found in common between the Treatment and PVT lists with published datasets. Subsequent worksheet tabs provide detailed comparisons for individual published datasets. Identification of a match required finding the exact same gene symbol in published datasets as the first listed gene symbol in the Treatment and PVT list. Thus, overlap may be underestimated if different annotations were given to the same gene. (XLSX 96Â kb)
DOI: 10.6084/m9.figshare.6234272
title: Additional file 1: of A boy with developmental delay and mosaic supernumerary inv dup(5)(p15.33p15.1) leading to distal 5p tetrasomy â case report and review of the literature

description: Table S1. Detailed description of encompassed genes. (XLS 328Â kb)
DOI: 10.6084/m9.figshare.6234272.v1
title: Additional file 1: of A boy with developmental delay and mosaic supernumerary inv dup(5)(p15.33p15.1) leading to distal 5p tetrasomy â case report and review of the literature

description: Table S1. Detailed description of encompassed genes. (XLS 328Â kb)
DOI: 10.6084/m9.figshare.6234266
title: Additional file 3: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

description: Table S2. List of Treatment effect Transcript Clusters with fold change, P-value, and FDR for the Treatment effect at the Experimental phase, Mfuzz Treatment group, and annotations from the NetAffxâ ˘ batch annotation tool. Notes on gene family, comments, and mRNA assignment are from review of the Affymetrix annotation package (HuGene-1_0-st-v1.na35.hg19.probeset.csv) for Transcript Cluster IDs without gene level (e.g., title) annotation or with mixed hybridization targets. Mixed hybridization targets suggest the potential for the Transcript Cluster to be associated with more than one gene. Three slashes designate multiple annotations associated with the same Transcript Cluster. Column human blood designates whether or not the gene was found in an IPAÂŽ biomarker screen for genes detectable in human blood. (XLSX 88Â kb)
DOI: 10.6084/m9.figshare.6234266.v1
title: Additional file 3: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

description: Table S2. List of Treatment effect Transcript Clusters with fold change, P-value, and FDR for the Treatment effect at the Experimental phase, Mfuzz Treatment group, and annotations from the NetAffxâ ˘ batch annotation tool. Notes on gene family, comments, and mRNA assignment are from review of the Affymetrix annotation package (HuGene-1_0-st-v1.na35.hg19.probeset.csv) for Transcript Cluster IDs without gene level (e.g., title) annotation or with mixed hybridization targets. Mixed hybridization targets suggest the potential for the Transcript Cluster to be associated with more than one gene. Three slashes designate multiple annotations associated with the same Transcript Cluster. Column human blood designates whether or not the gene was found in an IPAÂŽ biomarker screen for genes detectable in human blood. (XLSX 88Â kb)
DOI: 10.6084/m9.figshare.6234260
title: Additional file 5: of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S4 DESeq2 analysis results for genes with uncorrected PÂ
DOI: 10.6084/m9.figshare.6234260.v1
title: Additional file 5: of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S4 DESeq2 analysis results for genes with uncorrected PÂ
DOI: 10.6084/m9.figshare.6234245
title: Additional file 4: of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S3. CircRNA-miRNA interactions with â Ľâ 100 predicted binding sites. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.6234245.v1
title: Additional file 4: of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S3. CircRNA-miRNA interactions with â Ľâ 100 predicted binding sites. (XLSX 48Â kb)