cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25903/78qd-ka91
title: Trail user study- Baldy Yabi Circuit Walk and Atherton Forest MTB park

description: <p>The data set contains the results of a survey identify the contribution that outdoor recreation areas play in the health and wellbeing of residents, to describe trail users&rsquo; recreation specialisation characteristics, and to explore the attitudes of visitors and local trail users towards sustainable outdoor recreation. The Herberton Range State Reserve and Baldy Mountain Forest Reserve are adjoining nature reserves situated 1 km east of the regional township of Atherton, Queensland, Australia. The survey was informed by research from sustainability, health promotion and leisure research. The measurement employed in the study comprised quantitative and open[1]ended questions, including binary and categorical responses, and 5-point scales.</p>
DOI: 10.25903/pr6s-ct80
title: 1825 Beechey expedition

description: <p>This dataset describes the 1825-1828 voyage of the Blossom under Captain Beechey<p>
<p>Software/equipment used to create/collect the data: Excel, JCU Libraries<p>
<p>Software/equipment used to manipulate/analyse the data: TLCMap<p>
DOI: 10.25903/1sx3-f361
title: Wallace v2.0 Climate: Wallace 1.0 Climate models used to model species distributions

description: <p>Climate change scenarios for Wallace 1.0. Includes the Community Integrated Asssessment System (CIAS) raw data and Climatic Data Generator (climmgen) outputs from the Tyndall Centre, University of East Anglia, UK.</p>
DOI: 10.25903/3tmd-sw18
title: Data from: Long-term changes in populations of rainforest birds in the Australia Wet Tropics bioregion: a climate-driven biodiversity emergency
DOI: 10.4225/28/57abba449e639
title: Biotic tropical seagrass seed dispersal by dugong and green sea turtles in the Great Barrier Reef
DOI: 10.25903/5da92ba92d4ed
title: Accelerometer running data

description: <p>Centre of mass acceleration data was collected while runners ran a long distance overground run.  This was for a PhD project investigating running bomechanics related to running performance and runnng injuries. </p>
<p>Centre of mass acceleration data was captured from a tri-axial accelerometer attached to the lower back of runners while they ran for 8 km around an outdoor athletics track.</p>
DOI: 10.4225/28/54166be99ca83
title: Reproductive characteristics of Amphiprion melanopus held under elevated CO2 and increased temperature conditions
DOI: 10.25903/6zyt-yv37
title: Benthic cover data from: Sea-weeding: manual removal of macroalgae facilitates rapid coral recovery

description: <p>This data record contains benthic survey data from 2018-2021 from the sea-weeding field experiment at Magnetic Island</p>
<p>Software/equipment used to create/collect the data:</p>
<p>Benthic data were collected using photographic surveys (Olympus TG6) followed by point count software (CPCe).<br />Biomass data were collected in the field with a fish scale. <br />PIT data were collected in the field using transect tapes and slates.</p>
DOI: 10.4225/28/560226569fa82
title: Near Infrared Spectra of Australian Rainforest leaf litter (decomposition)
DOI: 10.25903/8bpq-z933
title: Explorations into the rare earth chemistry of biphenolates and superbulky cyclopentadienyl ligands, and a study of C-F activation by rare earth metals - characterisation data

description: <p>This data set includes the characterisation data for all compounds and complexes outlined in the thesis.</p>
<p>Software/equipment used to create/collect the data: NMR data were collected using a Bruker 400 MHz NMR instrument, and processed using TopSpin 3.5. Infrared data were collected using a Nicolet 6700 FTIR spectrometer, using OMNIC 9 to process the data. X-ray crystal data were collected using the MX1: Macromolecular Crystallography beamline at the Australian Synchrotron, and processed using Blu-Ice, using a Bruker X8 APEX II, and processed using the SAINT program, and using a Rigaku SynergyS diffractometer, and processed with CrysAlisPro.55 software suite.</p>
<p>Software/equipment used to manipulate/analyse the data: NMR data were analysed using MestReNova 14.1.2 (saved as .mnova files) Infrared data were analysed using OMNIC 9 (saved as .SPA files) X-ray crystal data were analysed using Olex2.1.5 (raw data and .cif, .hkl and .res files)</p>
DOI: 10.25903/338n-h892
title: Data: Subfamily based consensus PCR primers for herpesvirus detection 

description: The data include consensus primers targeting different regions of herpesviral genome. The data was generated for the development of singleplex touchdown consensus PCR assays. The primers were designed using Geneious software (v11.1.5), and their sensitivity and specificity were evaluated with a variety of herpesviruses.
DOI: 10.4225/28/55ada75c6f7b3
title: Painting in the Tropics
DOI: 10.4225/28/56a1c0cda2408
title: Integrated land-sea planning in the Gulf of California, Mexico
DOI: 10.4225/28/5745456ad6433
title: Shoaling reduces metabolic rate in a gregarious coral reef fish species
DOI: 10.4225/28/57997de4d306a
title: Thermosensitive period of sex determination in the coral reef damselfish Acanthochromis polyacanthus and the implications of projected ocean warming
DOI: 10.25903/x0qp-pm46
title: Gladstone megaherbivore exclusion data 2017
DOI: 10.25903/d3az-yb02
title: Aglaia elaeagnoidea DArTseq data
DOI: 10.4225/28/557e3196de14d
title: Public's willingness to be referred to a veterinarian by their GP if they have a zoonotic disease
DOI: 10.25903/ehd3-ek49
title: Salinity, sodicity and related properties of soil and water in the sugarcane growing regions of Australia

description: <p>The data was collected to devise rapid diagnostic tests for determining sodicity and salinity of soil and irrigation water in the sugarcane growing districts of Australia. At 250 locations across all the main sugarcane growing regions of Australia, except the Wet Tropics (i.e. Bundaberg, Burdekin, Herbert, Mackay, Mareeba and Proserpine regions), apparent electrical conductivity of the soil was measured using an electromagnetic induction meter, and soil samples were taken to 0.75 or 0.80 m depth in 0.100-, 0.125- or 0.250-m increments. The samples were analysed for 1:5 soil:water extract pH, electrical conductivity and sodium concentration (with a subset also analysed for Ca, Mg and K concentration); exchangeable cations; field texture and dispersion index. 141 irrigation water samples from the Burdekin region (channel and bore samples) were analysed for electrical conductivity, cation concentrations and alkalinity. The data set contains all the primary results.</p>
<p>Software/equipment used to create/collect the data: See analytical methods in Nelson PN, Lawer AT, Ham GJ. 2002. Evaluation of methods for field diagnosis of sodicity of soil and irrigation water in the sugarcane growing districts of Queensland, Australia. Australian Journal of Soil Research 40, 1249-1265. <a href="https://doi.org/10.1071/SR02028">https://doi.org/10.1071/SR02028</a></p>
<p>Software/equipment used to manipulate/analyse the data: Microsoft Excel</p>
DOI: 10.25903/5f51960d7a7f6
title: Examining the thermal sensitivity of juvenile rabbitfishes, Siganus doliatus and S. lineatus (Siganidae)

description: <p>The following dataset supports a study investigating juvenile rabbitfish development in varying thermal conditions to better predict their outcomes in future climate change scenarios. Dataset represents numerous experiements from morphology (growth in mass, length, & depth/physical condition (HSI)), behavior (feeding latency/feeding rate/activity rate), and immunity (immune response) of two different rabbitfish species (<em>Siganus doliatus </em>& <em>Siganus lineatus</em>). This dataset also include supporting data such as otolith aging and supplemental analysis.</p>
DOI: 10.25903/cyy5-wt02
title: Association of single nucleotide polymorphisms in lipogenic genes with carcass traits and meat fatty acids composition of tropical crossbred beef steers

description: <p>The dataset was collected from two experiments (Grazing trial and Pen trial) aimed at evaluating the association of single nucleotide polymorphisms (SNPs) in the fatty acid binding protein 4 (FABP4), stearoyl-CoA desaturase (SCD) and fatty acid synthase (FASN) coding genes with the chiller-assessed carcass traits and meat fatty acids composition of the tropically adapted crossbred beef steers of northern Australia. The steers were managed as described by Mwangi et al, 2021 (<a href="https://doi.org/10.3390/ani11082355">https://doi.org/10.3390/ani11082355</a>) and Mwangi et al, 2022 (<a href="https://doi.org/10.1371/journal.pone.0260918">https://doi.org/10.1371/journal.pone.0260918</a>). The target genes were amplified from DNA obtained from whole blood and sequenced using the Next-Generation sequencing technique as described previously by Pewan et al, 2021 (<a href="https://doi.org/10.3390/foods10102288">https://doi.org/10.3390/foods10102288</a>). The data were analysed using the linear models fitted with generalised least squares. Group means were compared using one-way analysis of variance and significantly different means were separated using the Tukey-adjusted multiple comparisons test.</p>
<p>Software/equipment used to create/collect the data: NucleoSpin Blood Kit (Macherey-Nagel GmbH and Co. KG, Duren, Germany) NanoDrop ND-1000 (ThermoFisher Scientific Australia Pty Ltd, Victoria, Australia) Platinum SuperFi PCR Master Mix and Phusion Hot Start II High-Fidelity PCR Master Mix (Thermo Fisher Scientific, Scoresby, Australia) PrimeSTAR GXL Master Mix (TaKaRa Bio Inc., Kusatsu, Shiga, Japan) SimpliAmp Thermal Cycler (Thermofisher Scientific, Scoresby, Australia) Sera-Mag SpeedBeads in a Zephyr NGS Workstation (PerkinElmer, Waltham, Massachusetts, USA) Nextera XT DNA Library Prep kit (Illumina, CA, USA) QuantiFluor&reg; dsDNA System (Promega, Madison, WI, USA) Illumina MiSeq benchtop sequencer (Illumina, Inc, San Diego, CA, USA)</p>
<p>Software/equipment used to manipulate/analyse the data: Geneious Prime software version 2020.2.5 (Biomatters Ltd, Auckland, New Zealand) and R software v.4.0.2 (R Foundation for Statistical Computing, Vienna, Austria)</p>
DOI: 10.25903/5cd4d312cbcfb
title: Dataset: fish assemblages and environmental parameters in Bourake

description: <p>This dataset presents data collected by underwater video cameras and multi-parameter loggers on the edge and 5 m inside (in-forest) a mangrove forest in Bourake, New Caledonia, from 21 February to 25 February 2017 and from 27 February to 1 March 2017. It comprises all the information related to date, time, site, habitat (edge vs in-forest), tidal range, tide direction (increasing vs decreasing), time of day (afternoon vs morning), lunar phase (neap vs spring tide), dissolved oxygen, depth of sampling, the characteristic of the video recordings, and fish data (taxonomic richness (how many taxa recorded during one 5-minute video interval; matrix of presence (1) vs absence (0) for each taxon identified). </p>
DOI: 10.4225/28/5949b8279ae44
title: Biogeography, reproductive biology and phylogenetic divergence within the Fungiidae (mushroom corals)
DOI: 10.4225/28/5743ad692977b
title: Integrating connectivity and climate change into marine conservation planning
DOI: 10.25903/8ac4-3m06
title: Ch 4. Disease severity image analysis

description: <p>A method was developed to analyse disease severity in banana rhizomes using photography and image analysis classification. Data is from many trials where disease severity was measured using the new and traditional methods for comparison.</p>
<p>Software/equipment used to create/collect the data: Microsoft office</p>
<p>Software/equipment used to manipulate/analyse the data: R</p>
DOI: 10.5281/zenodo.13346116
title: BAMS map: 2023 Canadian forest burned area dataset

description: The BAMS map is a 2023 Canadian forest burned area dataset with a 10-meter resolution. It uses an unsigned integer data type, where a pixel value of 1 represents burned forest, while 0 indicates unburned areas, non-forest, or no data. The map is provided in the WGS 1984 coordinate system (EPSG:4326), covering the region from 145°W to 50°W longitude and from 40°N to 85°N latitude.
DOI: 10.5281/zenodo.13346117
title: BAMS map: 2023 Canadian forest burned area dataset

description: The BAMS map is a 2023 Canadian forest burned area dataset with a 10-meter resolution. It uses an unsigned integer data type, where a pixel value of 1 represents burned forest, while 0 indicates unburned areas, non-forest, or no data. The map is provided in the WGS 1984 coordinate system (EPSG:4326), covering the region from 145°W to 50°W longitude and from 40°N to 85°N latitude.
DOI: 10.4225/28/58080af2157bf
title: Effect of elevated carbon dioxide on shoal familiarity and metabolism in a coral reef fish
DOI: 10.4225/28/58ffdc3d4403f
title: Plantar pressures are elevated in people with longstanding diabetes-related foot ulcers during follow-up
DOI: 10.25903/5dcb4c44aa86a
title: Occupation of damselfishes across reef seascape and colony scale, GBR 2016 data

description: <p>The following datasets correspond with the Chase & Hoogenboom 2019 Diversity publication entitled "Differential occupation of available coral hosts by coral-dwelling damselfish (Pomacentridae) on Australia's Great Barrier Reef.”</p><p>colony_level_dataaset_2016.csv - Colony level features of occupied and unoccupied colonies looking at the smaller scale patterns of five focal fish species (<em>Chromis viridis</em>, <em>Dascyllus aruanus</em>, <em>Dascyllus reticulatus</em>, <em>Pomacentrus amboinensis</em> and <em>Pomacentrus moluccensis</em>) occupying five common branching morphologies (<em>Acropora intermedia</em>, <em>Acropora spathulata</em>, <em>Pocillopora damicornis</em>, <em>Seriatopora hystrix</em>, and <em>Stylophora pistialla</em>)</p><p>reef_seascape_dataaset_2016.csv - dataset of 50 x 5 m belt transects of 51 sites spread among 22 reefs looking at the larger scale prevalence of five focal fish species (<em>Chromis viridis</em>, <em>Dascyllus aruanus</em>, <em>Dascyllus reticulatus</em>, <em>Pomacentrus amboinensis</em> and <em>Pomacentrus moluccensis</em>) occupying five common branching morphologies (<em>Acropora intermedia</em>, <em>Acropora spathulata</em>, <em>Pocillopora damicornis</em>, <em>Seriatopora hystrix</em>, and <em>Stylophora pistialla</em>)</p><p>A data key is also </p><p>The full methodology is available in the Open Access publication from the Related Publications link below.</p><p> </p>
DOI: 10.25903/5b72631b2dd70
title: Threatening processes to taxa of conservation concern in Northern Australia

description: <p>This collection contains several spatial datasets describing the distribution and severity of key threatening processes to native biodiversity, and especially to threatened species, in Northern Australia. Where possible a measure of current and future (2050) threat intensity or probability is provided and an estimate of any uncetainties incorporated. These outputs were produced as part of a federally funded NESP project (NESP 3.3 Threatened species and threatening processes in Northern Australia). The main threatening processes addressed are 1. invasive weeds, 2. invasive/feral animals, 3. diseases, 4. changes in flow regime/runoff, 5. changes in fire regimes, 6. agriculuture, 7. grazing, 8. climate change, 9. overexploitation/hunting/illegal harvest, 10. mining, and 11. urbanization.</p>
DOI: 10.25903/5e6ae790f4b94
title: Data from: Severe coral loss shifts energetic dynamics on a coral reef

description: <p>This entry refers to Morais et al."Severe coral loss shifts energetic dynamics on a coral reef, Functional Ecology. It encompasses R scripts and data tables used to reproduce the analyses of the paper.</p><p>The compressed file in this data entry encompasses three folders: '1st Inputs' is where the input data tables are located, '2nd Scripts' is where the scripts with functions, routines and procedures are located; and '3rd Outputs' is the folder to which figures and tables will be exported once the analyses are replicated.</p><p>Includes data collected in 2003/04 and in 2018.</p>
DOI: 10.4225/28/5a725ee7548a7
title: Global warming transforms coral reef assemblages
DOI: 10.4225/28/5403ca25bc84d
title: Observations of spawning in laboratory aquaria for species and morphs of the Acropora humilis species group recorded during three spawning seasons (1999-2000, 2000-2001 and 2001-2002)
DOI: 10.4225/28/5a1cd71b4ef8a
title: Effect of elevated CO2 and small boat noise on the kinematics of predator-prey interactions
DOI: 10.25903/v799-7v58
title: Investigating bee stressors

description: <p>Data was collected during laboratory experiments designed to answer the questions:</p>
<ul>
<li>Do stingless bees prefer or avoid sucrose solution containing insecticides?</li>
<li>Does insecticide exposure influence thermal tolerance of a stingless bee?</li>
</ul>
<p>The full methodology is available in the Open Access publication from the Related publications link below.</p>
<p>Software/equipment used to create/collect the data: Microsoft Excel Version 16.64 RStudio 2021.09.0 Build 351 R 2.1.1 GUI 1.77 Big Sur ARM build (7985)</p>
<p>Software/equipment used to manipulate/analyse the data: MacBook Pro (13-Inch, M1, 2020), macOS Big Sur</p>
DOI: 10.25903/5dbfb1d52fdc8
title: Data for: Sixteen years of social and ecological dynamics reveal challenges and opportunities for adaptive management in sustaining the commons

description: <p class="MsoNormal"><span lang="EN-US" style="mso-ansi-language: EN-US;">This dataset contains ecological and social data of two communities in Karkar Island (PNG) collected by Prof. Joshua Cinner (and team) of James Cook University between 2001 and 2017.</span></p>
DOI: 10.4225/28/5a8e04ef8103e
title: Data from: McCormick MI, Allan BJM, Harding HR, Simpson SD (2018) Boat noise impacts risk assessment in a coral reef fish but effects depend on engine type. Scientific Reports
DOI: 10.25903/550s-tj34
title: Modelling Trichodesmium photophysiology in the Great Barrier Reef using the eReefs models

description: <p>The research is important for the Great Barrier Reef (GBR) water quality management. The data was collected for the parameterisation of the variation of <em>Trichodesmium</em> phycobilipigments under varying light conditions in the GBR. Linux operating system, C compiler and NETCDF library were used to build the modified EMS applications on AIMS HPC. The EMS version used is 1.2.1. The modified EMS was derived from the eReefs model (https://ereefs.org.au/ereefs) and the model descriptions are found in Baird et al. (2020). Methods for collecting the data include the following:</p>
<p>Hydrodynamic model forcing available in <a href="https://research.csiro.au/ereefs/models/models-about/models-hydrodynamics/">https://research.csiro.au/ereefs/models/models-about/models-hydrodynamics/</a>; Biogeochemical (BGC) model forcing (Simulated hydrodynamic model output, regional wave model data, 2019 catchment conditions of nutrient and sediment loads available in <a href="https://svnserv.csiro.au/svn/CEM/projects/eReefs/model/gbr4_bgc_hindcast/gbr4_H2p0_B3p2_Cb/">https://svnserv.csiro.au/svn/CEM/projects/eReefs/model/gbr4_bgc_hindcast/gbr4_H2p0_B3p2_Cb/</a>); Initialisation file: GBR4 BGC 3p1 initialisation data.              </p>
<p>The 4km resolution grid of the EMS was run on AIMS HPC from 1/12/2010 to 30/11/2012 and the data was collected on 26/06/2023. Software-specific information needed to interpret the data are R Software version 3.5.1, GNU Compiler Collection (GCC) version 6.1.0, network Common Data Form (NetCDF-cxx) version 4.2.1, Open Message Passing Interface (OpenMPI-gcc) version 1.10.2 and NetCDF Operators (NCO) version 4.5.5.</p>
<p>R scripts and MATLAB scripts for post-processing simulated data are available: <a href="https://github.com/Chinenyeani1986/Trichodesmium-buoyancy">https://github.com/Chinenyeani1986/Trichodesmium-buoyancy</a> </p>
<p> </p>
DOI: 10.25903/29h0-w215
title: Global shallow water reef width patterns

description: <p>Dataset encompasses the estimated reef width patterns of reef systems within the Caribbean and Indo-Pacific. Uploaded is the raw dataset, as well as the R script to create the final dataset for analysis. The raw dataset contains general location, exposure status, morphology classification, coordinates and shallow reef width patterns (shale_length).</p>
<p>Software/equipment used to create/collect the data: ArcGIS Pro</p>
<p>Software/equipment used to manipulate/analyse the data: RStudio, Excel</p>
DOI: 10.25903/xfrm-d787
title: Wallace v2.0 Animalia: Habitat suitability distribution modelling for Animalia worldwide

description: <p>Climate change scenarios were sourced from the UK Met Office Hadley Centre for CMIP5 global climate models and scaled to 20km resolution. Species occurrence records were downloaded from GBIF. Maxent was used to model the habitat suitability distributions.<br /><a href="https://wallaceinitiative.org/">https://wallaceinitiative.org/</a></p>
DOI: 10.4225/28/58dd96b0e72b3
title: Flatback dispersal scenarios
DOI: 10.25903/5cb7df009656b
title: Summary of studies investigating the effects of elevated CO2 on fish behaviour

description: <p>This reference list is a summary of studies which have investigated the effects of elevated CO2 on fish behaviour.</p>
DOI: 10.25903/09v7-r187
title: Zircon U-Pb ages for the Herberton Mineral Field

description: <p>Iolite processed dataset obtained through LA-ICP-MS analyses of zircons. </p>
<p>To assess the timing of tin, copper, and indium mineralization in the Herberton Mineral Fields, geological sampling was conducted from the Baal Gammon and Isabel deposits and the surrounding area for zircon geochronology. Samples were taken from the tin-bearing UNA Porphyry, quartz-feldspar porphyries, volcanic rocks, and meta-sandstone from the Baal Gammon mine. Similar units were sampled from the Isabel deposits. From the regional geological units, samples were collected from the Jumna Granite, Herberton Hill Granite, Watsonville Granite, and the Slaughter Yard Creek Volcanics. Zircons were separated from these samples and analyzed for U-Pb isotopes by LA-ICP-MS at the Advanced Analytical Centre of the James Cook University, Townsville, Australia. The data included in this publication are the U-Pb isotopic ratios with their derived ages. Zircon LA-ICP-MS data were processed through the Iolite software, and only concordant ages of the granites, volcanics, and standards, and 10% discordance age for the meta-sandstone are included. The data was used in an Open Access publication of Kumar et al. (2022) on the geological setting of the Baal Gammon and Isabel deposits.  </p>
<p>Kumar, A. A., Sanislav, I. V., & Dirks, P. H. G. M. (2022). The geological setting of the indium-rich Baal Gammon and Isabel Sn-Cu-Zn deposits in the Herberton Mineral Field, Queensland, Australia. <em>Ore Geology Reviews</em>, 105095. <a href="https://doi.org/10.1016/j.oregeorev.2022.105095">https://doi.org/10.1016/j.oregeorev.2022.105095</a></p>
<p>Software/equipment used to create/collect the data: Iolite data reduction software</p>
<p>Software/equipment used to manipulate/analyse the data: LA-ICP-MS</p>
DOI: 10.25903/smez-7k34
title: Australia decadal climate change predictions (~5km resolution)
DOI: 10.4225/28/5890003d55fb6
title: In solution digestion and mass spectrometry identification of major proteins in various crustacean species
DOI: 10.4225/28/570f29213512f
title: CRU Monthly Average Climate Time Series (1901 - 2014): Mapped climate data with global extent at 30 arcminute resolution
DOI: 10.4225/28/55b58c5d690a8
title: Hydroregulation in the tropical skink Carlia rubrigularis
DOI: 10.25903/3s4e-t744
title: Household surveys on ecosystem service preferences and urbanization in the Solomon Islands

description: <p>Data from 200 household surveys comparing urban and rural dwellers' perceptions of ecosystem services.</p><p>Please refer to the metadata file for more information.</p>
DOI: 10.4225/28/579ab6f042dd7
title: Spatial nestedness of conservation priorities