cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vmcbt4yffm
title: Kinematical calculations of RHEED intensity oscillations during the growth of thin epitaxial films

description: Abstract A practical computing algorithm working in real time has been developed for calculating the reflection high-energy electron diffraction (RHEED) from the molecular beam epitaxy (MBE) growing surface. The calculations are based on the use of kinematical diffraction theory. Simple mathematical models are used for the growth simulation in order to investigate the fundamental behaviors of reflectivity change during the growth of thin epitaxial films prepared using MBE. Title of program: GROWTH Catalogue Id: ADVL_v1_0 Nature of problem Reflection high-energy electron diffraction (RHEED) is a very useful technique for studying growth and surface analysis of thin epitaxial structures prepared using the molecular beam epitaxy (MBE). The simplest approach to calculating the RHEED intensity during the growth of thin epitaxial films is the kinematical diffraction theory (often called kinematical approximation), in which only a single scattering event is taken into account. The biggest advantage of this approach is that we can calcul ... Versions of this program held in the CPC repository in Mendeley Data ADVL_v1_0; GROWTH; 10.1016/j.cpc.2005.04.005 ADVL_v2_0; GROWTHgr, GROWTH06; 10.1016/j.cpc.2006.06.013 ADVL_v2_1; GROWTH06_v2; 10.1016/j.cpc.2009.01.024 ADVL_v3_0; Growth09; 10.1016/j.cpc.2009.11.011 ADVL_v4_0; GrowthCP; 10.1016/j.cpc.2011.02.014 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/vmkvykcjcd
title: Block data subprograms for finite element program packages

description: Title of program: BLOCDAT Catalogue Id: AABL_v1_0 Nature of problem The input of the large finite element matrix BLOCK DATA, given by Konrad and Silvester in Z-format, is accomplished on a computer which does not support Z-formatted data input. Versions of this program held in the CPC repository in Mendeley Data AABL_v1_0; BLOCDAT; 10.1016/0010-4655(85)90126-2 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/z2twsxv2ty
title: Preclampsia definition and diagnosis

description: Mapping CPG on preeclampsia definitions and diagnosis
DOI: 10.17632/zsrz59p73n
title: Mindfulness and contingent selfesteem

description: Data for my thesis
DOI: 10.17632/28bwcp34sy
title: LINF_080017300

description: hypothetical protein - conserved; Leishmania infantum
DOI: 10.17632/73vdm5s4mv
title: NEUROPSYCHOLOGY AND MACHINE LEARNING DIFFERENTIATE DEMENTIA AND DEPRESSION

description: Data & Scripts
DOI: 10.17632/7gn6dj89t3
title: Sequential activity of CA1 hippocampal cells constitutes a temporal memory map for associative learning in mice

description: Sequential neural dynamics encoded by “time cells” play a crucial role in hippocampal function. However, the role of hippocampal sequential neural dynamics in associative learning is an open question. We used two-photon Ca2+ imaging of dorsal CA1 (dCA1) neurons in the stratum pyramidale (SP) in head-fixed mice performing a go-no-go associative learning task to investigate how odor valence is temporally encoded in this area of the brain. We found that SP cells responded differentially to the rewarded or unrewarded odor. The stimuli were decoded accurately from the activity of the neuronal ensemble, and accuracy increased substantially as the animal learned to differentiate the stimuli. Decoding the stimulus from individual SP cells responding differentially revealed that decision-making took place at discrete times after stimulus presentation. Lick prediction decoded from the ensemble activity of cells in dCA1 correlated linearly with lick behavior indicating that sequential activity of SP cells in dCA1 constitutes a temporal memory map used for decision-making in associative learning.

Here we deposit the data necessary to generate the figures in our Current Biology manuscript (DOI: 10.1101/2023.10.01.560382) using the code deposited in https://github.com/restrepd/CA1_Figures
DOI: 10.17632/7yt3srxwgy
title: Cumhuriyet CIPP

description: CIPP analysis of Sivas Cumhuriyet University Medical School Cirriculum
DOI: 10.17632/833xnxpkzy
title: LDHU3_07.1480

description: delta-5 fatty acid desaturase; Leishmania donovani (HU3 strain)
DOI: 10.17632/859dwpw27k
title: Heavy rare earth element hyper-enrichment in highly evolved granites through multiple hydrothermal mobilization

description: The dataset includes all analytical results for the article "Heavy rare earth element hyper-enrichment in highly evolved granites through multiple hydrothermal mobilization".
DOI: 10.17632/8r93k59dxf
title: IPEC-J2 autophagy induced by TLR4 and NSP6 interaction facilitate porcine epidemic diarrhea virus replication

description: We attempted to reveal how PEDV and the functional domain of the viral protein NSP6 mediate autophagy during infection and how PEDV exploits the cellular autophagic machinery for replication. We report the receptor that is necessary for PEDV-induced autophagy as determined using RNA sequencing. In addition, we identified the functional sites and signaling pathways of PEDV NSP6-induced autophagy, providing a theoretical basis for understanding the pathogenesis of PEDV and controlling viral infection.
FIG 1 PEDV infection in IPEC-J2 cells induced autophagy. (a-b) Western blot was used to detect changes in the expression of LC3-II, p62, and PEDV-N proteins in PEDV-infected IPEC-J2 cells at 6 h, 12 h, 18 h, 24 h, 30 h, 36 h, 42 h and 48 h post-infection.(c) Quantitative analysis of LC3-II and β-actin. (d) Quantitative analysis of P62a and β-actin. (e) Quantitative analysis of PEDV-N and β-actin. (f) PEDV-N gene copy number analysis. 
FIG 2 Autophagosome observed using TEM. (a) Cell control group and magnified autophagosome structure in the control group. (b) PEDV-infected cells and magnified autophagosome structure in PEDV-infected group.
FIG 3 The role of autophagy in PEDV replication. (a) Expression levels of LC3-II and p62 in IPEC-J2 cells pretreated with different concentrations of chloroquine. (b) Expression level of LC3-II in IPEC-J2 cells treated with different concentrations of insulin. (c) Expression level of LC3-II in IPEC-J2 cells treated with different concentrations of rapamycin. The control group was normal cells. (d) Autophagic flow was detected using GFP-mCherry-LC3 dual fluorescence labeling. 
FIG 4 Statistics, volcano plot and pattern clustering heat maps of differentially expressed mRNAs. 
FIG 5 PEDV N gene expression in TLR4-/-, TFRC-/-, and GABRG3-/- IPEC-J2 cells. *(P &lt; 0.05).
FIG 6 The effects of TLR4-/-, TFRC-/-, and GABRG3-/- on autophagy as assessed using western blotting. 
FIG 7 Analysis of AKT-mTOR phosphorylation using western blotting. 
FIG 8 Analysis of LC3-II and p62 protein levels by western blotting. 
FIG 9 Autophagic flow was detected using GFP-mCherry-LC3 dual fluorescence labeling. 
FIG 10 Analysis of LC3-II and p62 expression in IPEC-J2 cells using western blotting. 
FIG 11 Autophagic flow was detected using GFP-mCherry-LC3 dual fluorescence labeling.
FIG 12 Analysis of AKT-mTOR signaling pathway activation using western blotting. 
FIG 13 Detection of TLR4 and NSP61-2C co-localization using indirect immunofluorescent assay
FIG 14. Molecular mechanism model diagram of autophagy induced by PEDV.
Figure S1. GO enrichment analysis of the differentially expressed mRNAs. 
Figure S2. KEGG pathway analysis of the differentially expressed mRNAs.
DOI: 10.17632/9v95tskgx3
title: LINF_340052200

description: 1-2-Dihydroxy-3-keto-5-methylthiopentene dioxygenase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/b6znbv2mx9
title: LDHU3_05.0420

description: Protein of unknown function – conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/ds3kcryfbp
title: 4. Early-life social experience shapes social avoidance reactions in larval zebrafish - Swim bout data Part 4

description: Swim bout data associated with Groneberg et al., 2020 Current Biology doi:10.1016/j.cub.2020.07.088 (Part 4/6) Data files for Fig. S2J-M (Fig2supplement_GeneralLocomotion_Comparison_Part3.zip) See http://dx.doi.org/10.17632/g2tfmhts3k.1 for code and instructions on how to access the data and reproduce the figures
DOI: 10.17632/fs58ng4wz6
title: Volatile oils and fatty oils from leaves and seeds of Moringa oleifera Lam. cultivated in Southeast Vietnam

description: Volatile oils and fatty oils from leaves and seeds of Moringa oleifera Lam. varieties cultivated in Ho Chi Minh City (HCM) Dong Nai province (DN), and Ninh Thuan province (NT) were extracted and evaluated. The volatile oil was extracted by hydrodistillation from 4-6 hours. The faffy oil of seeds was extracted by solvent extraction with hexane for 9 hours. The chemical composition of the oils was analysed by Gas Chromatography-Mass Spectrometry (GC/MS) and Gas Chromatography-Flame Ionization Detector (GC/FID) methods.
DOI: 10.17632/kw6m6ztgh3
title: TIPI-valve hemodynamic measurements

description: This data contains measurements of various hemodynamic parameters within a hemodynamic testing device of the type HKP 2.0.
The tested valves include the data of a previous publication (TIPI 2.2) as well as a biological valve (BP => Edwards Perimount 23mm) and a mechanical valve (MP => 23 mm bileaflet valve, St. Jude Medical) as references as well as the three newly developed prototypes TIPI 3.1, 3.3 and 3.4.
DOI: 10.17632/m8xysy3yr6
title: Data for: Worry alters speed-accuracy tradeoffs but does not impair sustained attention
DOI: 10.17632/r94y8thxw5
title: Squamous carcinoma of lip: Clinical feature analysis and suggestion of reconstruction algorithm_supplementary

description: Squamous carcinoma of lip: Clinical feature analysis and suggestion of reconstruction algorithm supplementary table and figure
DOI: 10.17632/rc3wtmxdjx
title: LINF_360073600

description: glucose transporter
Leishmania infantum (strain JPCM5)
DOI: 10.17632/zgvbcg7tnv
title: Data for: Influence of Vehicular NOx Emissions on the Growth and Isotopic Composition of Aleppo Pine Trees in Malta
DOI: 10.17632/znvgrcmzgw
title: Microbiota 16S rRNA data with relations to rat social dominance

description: Microbiota 16S rRNA data with relations to rat social dominance, composed of three-time sequencing in natural populations as well as sequencing in ABX/FMT treatment
DOI: 10.17632/3y3n7n25v4
title: Highly Surface-Wrinkled and N-Doped CNTs Anchored on Metal Wire: A Novel Fiber-Shaped Cathode toward High-Performance Flexible Li–CO2 Batteries

description: Original data for this paper
DOI: 10.17632/8jdvhhv9vc
title: Microscope Photography as an Emotional Visual Response to the Issues of Loss, Belonging and Identity

description: This article focuses on the usage of microscope photography to present an emotional response to personal memories of what Yugoslavia was in my experience and on my understanding of issues of loss, belonging and identity, related to the specificity of the Yugoslav social context. Its focal point is the female interpretation of people, ways of life, buildings and human artifacts belonging to the historical period of communist Yugoslavia which once were, yet no longer remain. The work with archives, especially the photographs which originate from my personal family possession, brings closer these ghosts of the past times to the present moment. At the same time, photography is a means to investigate the society during and after the period of Yugoslavia, using site- writing visual narrative. The usage of photography as a vehicle for meaning making, allows an insight into the lives of people during communism through the lens of my closest family members. Autoethnography as a research method combined with personal narrative allows a deeper understanding of culture and values of Yugoslav society and their subsequent clash. Photographic practice-based research allows an insight into individual stories which form a deeper understanding of the pre- and post- war Yugoslav society and political circumstances surrounding it.
DOI: 10.17632/f4r2f25cjk
title: Supplementary data from: "Neuroanatomy and neurochemistry of rat cornea: Changes with age"

description: This data set is the supplementary data for the Ocular surface paper entitled: "Neuroanatomy and neurochemistry of rat cornea: Changes with age" - https://doi.org/10.1016/j.jtos.2020.11.005
DOI: 10.17632/jc6ws8pmry
title: dataset

description: Numbers on digital platform revenue
DOI: 10.17632/k5rbbjvvbn
title: Figure6H GBO #7 _PDZi,TMZ

description: Figure6H GBO #7 _PDZi,TMZ
DOI: 10.17632/v2fxt5dmdd
title: Synthesis and characterization of a new Polylactic acid-Siloxane- Polyethylene oxide organic-inorganic nanocomposite presenting simultaneously high thermal stability, high resistance to degradation and absence of brittleness

description: This work presents the synthesis, structural investigation and some properties of a new PLA-Siloxane-PEO hybrid presenting covalent bonds between polymers and siloxane nanoparticles.The structural features, thermal properties and chemical stability of this biocompatible system have been studied by Fourier-Transform Infrared Spectroscopy (FTIR), Raman Spectroscopy, 29 Si Nuclear Magnetic Resonance (NMR), Scanning Electron Microscopy (MEV), X-Ray Diffraction (XRD), Small-Angle X-ray Scattering (SAXS), Thermogravimetric Analysis (TGA) and Differential Scanning Calorimetry (DSC). SEM and SAXS measurements showed that the siloxane nodes act as crosslinks between the polymer chains promoting miscibility between PLA and PEO. FTIR, Raman XRD, DSC and TGA results evidenced that presence of the siloxane nanoparticles diminishes crystallinity of both polymers and increases their thermal resistance. The same techniques also showed that the high miscibility between polymers in this system enhances PLA thermal stability and prejudices PLA crystallization. Among the absence of brittleness due to the low crystalline character of PLA, this new material exhibits a fantastic resistance to PLA degradation in aqueous medium, attributed both to the presence of the siloxane particles acting as a barrier towards water diffusion and to the hydrophilic PEO segments which may attract water molecules, preventing PLA hydrolysis. All these characteristics open amazing perspective for use of this hybrid material in biological and pharmaceutical applications.
DOI: 10.17632/vm4b7zyd6j
title: Mikrobiom

description: Dog microbiom- Barf and pet food
DOI: 10.17632/6bpwgyrc6w
title: Reciprocal effect of destinations on their tourism country brand

description: Data collected on an experiment about how information regarding a particular tourism destination affects the demand for other destinations in the same country due to the reciprocal effect on the tourism country brand.
DOI: 10.17632/6kknb8y2vh
title: Effect of a structured teaching program in the evaluation and perception of Inguinal Hernia by Phase III M.B.B.S. students.

description: This was a project done as part ofthe ACME requirement of MCI. Research question - Does a structured teaching improve the ability of a student to understand various aspects of hernia, its proper complete diagnosis and causative factors Objectives  • To assess whether a structured teaching will improve the ability of the student to diagnose hernia. • To understand the student perception towards the structured learning A cross sectional study was done at our institution using 37 Phase III MBBS students. A pre-test was followed by a structured methodology of teaching students about inguinal hernia. A post-test and feedback was taken after 2 days. Data was computed. Statistical significance was found by using non-parametric test – Wilcoxon Signed-Ranks test. The quantitative data were expressed as Mean ± SD and qualitative data were expressed as frequency and proportions. Results: Mean marks of the students were 4.37 and 5.11 among 8th and 9th semester students which improved to 15.04 and 14.33 marks which was statistically very highly significant with p = 0.0001 and 0.008 respectively which showed a gain in knowledge of students. Conclusion: Structured teaching improves the ability of an IMG to diagnose hernia. OSTE will help the teacher, whether junior or senior, learn to be a better teacher.
DOI: 10.17632/9m2bhrv5t3
title: Personalis ACE ImmunoID Analysis

description: Whole exome and transcriptome sequencing data for two patients with high-grade serous ovarian cancer. Data was used to identify non-synonymous somatic mutations which were predicted to give rise to neoantigens. Predicted neoantigens were filtered using peptide-MHC binding prediction algorithms. Neoantigens with a high predicted binding affinity were synthesised and screening for immunogenicity using autologous expanded TIL.
DOI: 10.17632/9p47cmj68b
title: Determinants of municipal financial performance in Honduras

description: Determinants of municipal financial performance in Honduras Expenditures, debt and taxes
DOI: 10.17632/dtd2dkdsrr
title: EARTH FEEDING

description: By review, both a basic knowledge of earth geology and with understanding In physics and chemistry, the law of conservation of energy, the basic fundamental of agriculture “It's Not the Harvest You Reap But the Seeds You Sow” so we should reach to the solution of the Earth-saving Method.
DOI: 10.17632/f3h8yn7k53
title: Conspiracy

description: "From Fringe to Mainstream" dataset
DOI: 10.17632/hnchbtnybs
title: A Simple Quantum Integro-Differential Solver (SQuIDS)

description: Simple Quantum Integro-Differential Solver (SQuIDS) is a C++ code designed to solve semi-analytically the evolution of a set of density matrices and scalar functions. This is done efficiently by expressing all operators in an SU(N) basis. SQuIDS provides a base class from which users can derive new classes to include new non-trivial terms from the right hand sides of density matrix equations. The code was designed in the context of solving neutrino oscillation problems, but can be applied to any problem that involves solving the quantum evolution of a collection of particles with Hilbert space of dimension up to six. The previous version of this program (AEXG_v1_0) may be found at https://doi.org/10.1016/j.cpc.2015.06.022.
DOI: 10.17632/hs4r96vydz
title: Data for: A spectral element method for modelling streamer discharges in low-temperature atmospheric-pressure plasmas

description: This dataset contains the results of numerical experiments on the application of the spectral element method 
to modelling of streamer discharges in low-temperature atmospheric-pressure plasmas.
DOI: 10.17632/tstsz84rs6
title: Spatial Stem Cell Fate Engineering via Facile Morphogen Localization - Processed data

description: Processed data
DOI: 10.17632/v4wmtg5wrm
title: Data for: A Novel Method for Application of Nanoparticles as direct Asphaltene Inhibitors during miscible CO2 Injection

description: First of all thanks for your consideration. Here it is some data. Regards Asghar Gandomkar
DOI: 10.17632/vdkbr9tdzr
title: drying-ozonation process in wheat seeds

description: The dates are in Portuguese language
DOI: 10.17632/3v2y7knxsz
title: Family_Public_Goods_& IntraHousehold DecisionMaking_data

description: This data is a for a study that examines sources of bargaining power that inform financial decision-making processes within co-resident couples and determining how bargaining power and decision-making impact on family-type public goods expenditure. The data is extracted from South Africa’s National Income Dynamic Study (NIDS), a study that collects a wide range of information about South African households and household members.
DOI: 10.17632/3yd2rj6c34
title: Indopacetus pacificus and Mesoplodon sp. beaked whale records from Pakistan and Iran

description: A small table with information on recent records of beaked whales originating from informal i.e. Citizen Science and Fisheries crew based observer program. It is aimed at providing the reader of our relevant publication a better view of all the records discussed and also to verify the species ID used in the paper along with associated information of each record.
DOI: 10.17632/46cj62735f
title: Partial inhibition of RNA polymerase I promotes animal health and longevity.
DOI: 10.17632/7bp5smky45
title: LINF_190006600

description: mitogen-activated protein kinase 9 (MPK9)
Leishmania infantum (strain JPCM5)
DOI: 10.17632/8f2xx4rxh9
title: Somatic hypermutation in adult and aged mice

description: Somatic hypermutation sequences associate with the manuscript "Estradiol Mediates Greater Germinal Center Responses to Influenza Vaccination in Female than Male Mice" currently in press at mBio. Data include JH4-intron sequencing from aged male and female mice and adult male and female mice after vaccination and boosting with Flu antigen. Sequences were trimmed to remove primer sequence and contain a small fragment of the FW3 of the IgH V1 family in mice and end ~500 bp downstream of JH4. Sequences were isolated from germinal center B cells (CD19+CD38-GL7+), amplified by nested PCR, and sanger sequenced.
DOI: 10.17632/98x5pkw364
title: Table S1. Genotype calls based on the Gifu reference assembly

description: Mustamin et al., 2022. New Phytologist Supporting Information