cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29078941
title: Additional file 15 of Comparative transcriptome analysis of differentially expressed genes of Medicago falcata L. breeding lines response to saline-alkaline stress

description: Additional file 15: Table S13. Expression profiles of hub genes in the MEturquoise module.
DOI: 10.6084/m9.figshare.29079433.v1
title: Additional file 8 of Longitudinal host-microbiome dynamics of metatranscription identify hallmarks of progression in periodontitis

description: Additional file 8.
DOI: 10.6084/m9.figshare.29079508
title: Additional file 6 of RNA-binding protein gene NOP58 exhibits crucial prognostic and therapeutic value in Ewing sarcoma

description: Supplementary Material 6: Table S4. GSEA analysis.
DOI: 10.6084/m9.figshare.29079508.v1
title: Additional file 6 of RNA-binding protein gene NOP58 exhibits crucial prognostic and therapeutic value in Ewing sarcoma

description: Supplementary Material 6: Table S4. GSEA analysis.
DOI: 10.6084/m9.figshare.29079367
title: Additional file 7 of Comprehensive single-cell transcriptomic reveals different destinies of melanocytes and dynamic changes of immune microenvironment in a psychological stress-induced leukoderma and leukotrichia mouse model

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.29079457.v1
title: Additional file 3 of Lettuce immune responses and apoplastic metabolite profile contribute to reduced internal leaf colonization by human bacterial pathogens

description: Supplementary Material 3: Dataset S2. Relative expression of all identified transcripts calculated as Log2 fold change between bacterium vs. mock inoculated samples. These values were used to create Figure S2. RT = Red Tide. GT = Green Tower. LR = Lollo Rossa. DPI = days post inoculation. O157:H7 = Escherichia coli O157:H7. STm 14028s = Salmonella enterica serovar Typhimurium 14028s.
DOI: 10.6084/m9.figshare.29079469.v1
title: Additional file 7 of Lettuce immune responses and apoplastic metabolite profile contribute to reduced internal leaf colonization by human bacterial pathogens

description: Supplementary Material 7: Dataset S4. Significantly enriched (p &lt; 0.05) gene ontology (GO) terms identified within DEG sets based on pairwise comparisons (bacterium vs. mock) for each genotype and time point. Terms were grouped into biological categories. Values are shown as Log10 p-value, which were used as input to create Figure 1. Ec = Escherichia coli O157:H7. Se = Salmonella enterica ser. Typhimurium 14028s. 1 = 1 day post inoculation. 7 = 7 days post inoculation.
DOI: 10.6084/m9.figshare.29079481
title: Additional file 11 of Lettuce immune responses and apoplastic metabolite profile contribute to reduced internal leaf colonization by human bacterial pathogens

description: Supplementary Material 11: Dataset S6. Relative accumulation of metabolites detected in the apoplastic wash fluid (AWF) from lettuce leaves inoculated with mock or bacterial inoculum at 1 and 7 days post inoculation (DPI) with Escherichia coli O157:H7 or Salmonella enterica serovar Typhimurium 14028s. Raw peak heights were normalized with the Log10 transformation and auto-scaling functions and subjected to Student’s t-test pair-wise comparisons (bacterium vs. mock) to identify differentially accumulated metabolites (DAMs) through the MetaboAnalyst5.0 software. DAMs were determined as those having a p-value &lt; 0.05 and a Log2 fold change (FC) ≤ −1 or ≥ 1. DAMs are highlighted in green. FDR = False Discovery Rate.
DOI: 10.6084/m9.figshare.29079403.v1
title: Additional file 1 of Characterization of the transcriptional cellular response in midgut tissue of temephos-resistant Aedes aegypti larvae

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.29079586.v1
title: Additional file 3 of WDR62 affects the progression of ovarian cancer by regulating the cell cycle

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29079403
title: Additional file 1 of Characterization of the transcriptional cellular response in midgut tissue of temephos-resistant Aedes aegypti larvae

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.29079415
title: Additional file 2 of Longitudinal host-microbiome dynamics of metatranscription identify hallmarks of progression in periodontitis

description: Additional file 2.
DOI: 10.6084/m9.figshare.29079427
title: Additional file 6 of Longitudinal host-microbiome dynamics of metatranscription identify hallmarks of progression in periodontitis

description: Additional file 6.
DOI: 10.6084/m9.figshare.29079499
title: Additional file 3 of RNA-binding protein gene NOP58 exhibits crucial prognostic and therapeutic value in Ewing sarcoma

description: Supplementary Material 3: Table S1. RBP genes used for candidate genes screening.
DOI: 10.6084/m9.figshare.29079502.v1
title: Additional file 4 of RNA-binding protein gene NOP58 exhibits crucial prognostic and therapeutic value in Ewing sarcoma

description: Supplementary Material 4: Table S2. 179 candidate genes.
DOI: 10.6084/m9.figshare.29079424.v1
title: Additional file 5 of Longitudinal host-microbiome dynamics of metatranscription identify hallmarks of progression in periodontitis

description: Additional file 5.
DOI: 10.6084/m9.figshare.29079427.v1
title: Additional file 6 of Longitudinal host-microbiome dynamics of metatranscription identify hallmarks of progression in periodontitis

description: Additional file 6.
DOI: 10.6084/m9.figshare.29079430
title: Additional file 7 of Longitudinal host-microbiome dynamics of metatranscription identify hallmarks of progression in periodontitis

description: Additional file 7.
DOI: 10.6084/m9.figshare.29079439.v1
title: Additional file 10 of Longitudinal host-microbiome dynamics of metatranscription identify hallmarks of progression in periodontitis

description: Additional file 10.
DOI: 10.6084/m9.figshare.29079541
title: Additional file 2 of Superiority of targeted RNA sequencing for fusion detection and subtype diagnosis in Chinese sarcoma patients: a multicenter study

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.29079436.v1
title: Additional file 9 of Longitudinal host-microbiome dynamics of metatranscription identify hallmarks of progression in periodontitis

description: Additional file 9.
DOI: 10.6084/m9.figshare.29079445
title: Additional file 12 of Longitudinal host-microbiome dynamics of metatranscription identify hallmarks of progression in periodontitis

description: Additional file 12.
DOI: 10.6084/m9.figshare.29079445.v1
title: Additional file 12 of Longitudinal host-microbiome dynamics of metatranscription identify hallmarks of progression in periodontitis

description: Additional file 12.
DOI: 10.6084/m9.figshare.29079430.v1
title: Additional file 7 of Longitudinal host-microbiome dynamics of metatranscription identify hallmarks of progression in periodontitis

description: Additional file 7.
DOI: 10.6084/m9.figshare.29079604
title: Additional file 1 of Mapping-based genome size estimation

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.29079466
title: Additional file 6 of Lettuce immune responses and apoplastic metabolite profile contribute to reduced internal leaf colonization by human bacterial pathogens

description: Supplementary Material 6: Dataset S3. Enrichment analysis of gene ontology (GO) terms within DEG sets identified between pairwise comparisons (bacterium vs. mock) for each cultivar and time point. Significantly enriched (p-value &lt; 0.05) GO terms are highlighted in green. DPI=days post inoculation. O157:H7 = Escherichia coli O157:H7. STm 14028s = Salmonella enterica serovar Typhimurium 14028s.
DOI: 10.6084/m9.figshare.29079469
title: Additional file 7 of Lettuce immune responses and apoplastic metabolite profile contribute to reduced internal leaf colonization by human bacterial pathogens

description: Supplementary Material 7: Dataset S4. Significantly enriched (p &lt; 0.05) gene ontology (GO) terms identified within DEG sets based on pairwise comparisons (bacterium vs. mock) for each genotype and time point. Terms were grouped into biological categories. Values are shown as Log10 p-value, which were used as input to create Figure 1. Ec = Escherichia coli O157:H7. Se = Salmonella enterica ser. Typhimurium 14028s. 1 = 1 day post inoculation. 7 = 7 days post inoculation.
DOI: 10.6084/m9.figshare.29079475
title: Additional file 9 of Lettuce immune responses and apoplastic metabolite profile contribute to reduced internal leaf colonization by human bacterial pathogens

description: Supplementary Material 9: Dataset S5. Normalized peak height values of metabolites detected in the apoplastic wash fluid of the lettuce cultivars Green Tower (GT), Lollo Rossa (LR), and Red Tide (RT) at 1- and 7-days post inoculation (DPI) with mock (MK), Escherichia coli O157:H7 (EC), or Salmonella enterica serovar Typhimurium 14028s (SE). Raw peak heights were normalized with the Log10 transformation and auto-scaling functions of MetaboAnalyst5.0 software. These values were used to create hierarchical clustering shown in Supplementary Figure S5.
DOI: 10.6084/m9.figshare.29079466.v1
title: Additional file 6 of Lettuce immune responses and apoplastic metabolite profile contribute to reduced internal leaf colonization by human bacterial pathogens

description: Supplementary Material 6: Dataset S3. Enrichment analysis of gene ontology (GO) terms within DEG sets identified between pairwise comparisons (bacterium vs. mock) for each cultivar and time point. Significantly enriched (p-value &lt; 0.05) GO terms are highlighted in green. DPI=days post inoculation. O157:H7 = Escherichia coli O157:H7. STm 14028s = Salmonella enterica serovar Typhimurium 14028s.
DOI: 10.6084/m9.figshare.29079475.v1
title: Additional file 9 of Lettuce immune responses and apoplastic metabolite profile contribute to reduced internal leaf colonization by human bacterial pathogens

description: Supplementary Material 9: Dataset S5. Normalized peak height values of metabolites detected in the apoplastic wash fluid of the lettuce cultivars Green Tower (GT), Lollo Rossa (LR), and Red Tide (RT) at 1- and 7-days post inoculation (DPI) with mock (MK), Escherichia coli O157:H7 (EC), or Salmonella enterica serovar Typhimurium 14028s (SE). Raw peak heights were normalized with the Log10 transformation and auto-scaling functions of MetaboAnalyst5.0 software. These values were used to create hierarchical clustering shown in Supplementary Figure S5.
DOI: 10.6084/m9.figshare.29079589
title: Additional file 4 of WDR62 affects the progression of ovarian cancer by regulating the cell cycle

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.29079574
title: Additional file 1 of Community differences and potential function along the particle size spectrum of microbes in the twilight zone

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.29079616
title: Additional file 5 of Mapping-based genome size estimation

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.29079541.v1
title: Additional file 2 of Superiority of targeted RNA sequencing for fusion detection and subtype diagnosis in Chinese sarcoma patients: a multicenter study

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.29079550.v1
title: Additional file 1 of Use of industrial hemp byproducts in ruminants: a review of the nutritional profile, animal response, constraints, and global regulatory environment

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.29079616.v1
title: Additional file 5 of Mapping-based genome size estimation

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.29079574.v1
title: Additional file 1 of Community differences and potential function along the particle size spectrum of microbes in the twilight zone

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.29079604.v1
title: Additional file 1 of Mapping-based genome size estimation

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.29079646.v1
title: Additional file 15 of Mapping-based genome size estimation

description: Supplementary Material 15
DOI: 10.5066/p13tjbwj
title: Lithologic logs and photographs of cores from the Atlantic Coastal Plain

description: Coring of Atlantic Coastal Plain sediments has long been the basis of many projects funded by the National Cooperative Geologic Mapping Program. Over the past 50 years, more than 50 cores have been obtained, and accompanying geologic field notes (lithologic logs) and photographs were made by various geologists at the time of coring. These lithologic logs and photographs provide a record of Atlantic Coastal Plain sedimentation that can be used by researchers mapping of stratigraphic changes across regions, geohydrologists tracing aquifer and aquiclude extent across state boundaries, climate modelers interested in relative sea level changes, and much more. These data form the basis for any geological research that is conducted on USGS cored material, either by USGS personnel or by outside entities such as state geological surveys and/or academic universities. Unfortunately, only a few of the many cores drilled in the Atlantic Coastal Plain have accompanying published lithologic logs and photographs. Compilation and publication of this data provides a means for stratigraphic reconciliation across state boundaries and benefits stake holders by allowing for easy access of these preliminary datasets. Preservation, cataloguing, and archiving of these geological materials allows for future access to these data. Digital copies of hand-written lithologic logs, representing the first on-site analysis of cored material, are provided for each core. Photographs, negatives, and slides of material taken immediately after coring have been converted to digital format. In some cases, there are gaps in the photographic record due to loss of original photographs. A table of related external resources, typically published articles, is also provided for each core.
DOI: 10.6084/m9.figshare.29079646
title: Additional file 15 of Mapping-based genome size estimation

description: Supplementary Material 15
DOI: 10.6084/m9.figshare.29079586
title: Additional file 3 of WDR62 affects the progression of ovarian cancer by regulating the cell cycle

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29079589.v1
title: Additional file 4 of WDR62 affects the progression of ovarian cancer by regulating the cell cycle

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.29079619
title: Additional file 6 of Mapping-based genome size estimation

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.29079550
title: Additional file 1 of Use of industrial hemp byproducts in ruminants: a review of the nutritional profile, animal response, constraints, and global regulatory environment

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.29079613
title: Additional file 4 of Mapping-based genome size estimation

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.29079607
title: Additional file 2 of Mapping-based genome size estimation

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.29079613.v1
title: Additional file 4 of Mapping-based genome size estimation

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.29079619.v1
title: Additional file 6 of Mapping-based genome size estimation

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.29079622
title: Additional file 7 of Mapping-based genome size estimation

description: Supplementary Material 7
DOI: 10.15468/dl.w5hcje
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Bombus ruderatus (Fabricius, 1775)"
 ]
}

 The dataset includes 237 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000551-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15426478
title: Observing Bethe strings in an attractive Bose gas far from equilibrium

description: Bethe strings are bound states of constituent particles in a variety of interacting many-body one-dimensional (1D) integrable quantum models relevant to magnetism, nanophysics, cold atoms and beyond. As emergent fundamental excitations, they are predicted to collectively reshape observable equilibrium and dynamical properties. Small individual Bethe strings have recently been observed in quantum magnets and superconducting qubits. However, creating states featuring intermixtures of many, including large, strings remains an outstanding experimental challenge. Here, using nearly integrable ultracold Bose gases, we realize such intermixtures of Bethe strings out of equilibrium, by dynamically tuning interactions from repulsive to attractive. We measure the average binding energy of the strings, revealing the presence of bound states of more than six particles. We find further evidence for them in the momentum distribution and in Tan’s contact, connected to the correlated density. Our data quantitatively agree with predictions from generalized hydrodynamics (GHD). Manipulating intermixtures of Bethe strings opens new avenues for understanding quantum coherence, nonlinear dynamics and thermalization in strongly-interacting 1D systems.
DOI: 10.5281/zenodo.15426479
title: Observing Bethe strings in an attractive Bose gas far from equilibrium

description: Bethe strings are bound states of constituent particles in a variety of interacting many-body one-dimensional (1D) integrable quantum models relevant to magnetism, nanophysics, cold atoms and beyond. As emergent fundamental excitations, they are predicted to collectively reshape observable equilibrium and dynamical properties. Small individual Bethe strings have recently been observed in quantum magnets and superconducting qubits. However, creating states featuring intermixtures of many, including large, strings remains an outstanding experimental challenge. Here, using nearly integrable ultracold Bose gases, we realize such intermixtures of Bethe strings out of equilibrium, by dynamically tuning interactions from repulsive to attractive. We measure the average binding energy of the strings, revealing the presence of bound states of more than six particles. We find further evidence for them in the momentum distribution and in Tan’s contact, connected to the correlated density. Our data quantitatively agree with predictions from generalized hydrodynamics (GHD). Manipulating intermixtures of Bethe strings opens new avenues for understanding quantum coherence, nonlinear dynamics and thermalization in strongly-interacting 1D systems.
DOI: 10.6084/m9.figshare.29079610
title: Additional file 3 of Mapping-based genome size estimation

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29079610.v1
title: Additional file 3 of Mapping-based genome size estimation

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29079625
title: Additional file 8 of Mapping-based genome size estimation

description: Supplementary Material 8
DOI: 10.6084/m9.figshare.29079625.v1
title: Additional file 8 of Mapping-based genome size estimation

description: Supplementary Material 8
DOI: 10.6084/m9.figshare.29079607.v1
title: Additional file 2 of Mapping-based genome size estimation

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.29079622.v1
title: Additional file 7 of Mapping-based genome size estimation

description: Supplementary Material 7
DOI: 10.15468/dl.danh7u
title: Occurrence Download

description: A dataset containing 1403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Bombus terrestris (Linnaeus, 1758)"
 ]
}

 The dataset includes 1403 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000553-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15426459
title: Investigating the D" Reflector Beneath the Indian Ocean with Source Arrays

description: Scripts to reproduce the vespagrams and the migration presented in Thomas et al. (2025, Seismica) "Investigating the D" Reflector Beneath the Indian Ocean with Source Arrays"
DOI: 10.5281/zenodo.15426460
title: Investigating the D" Reflector Beneath the Indian Ocean with Source Arrays

description: Scripts to reproduce the vespagrams and the migration presented in Thomas et al. (2025, Seismica) "Investigating the D" Reflector Beneath the Indian Ocean with Source Arrays"
DOI: 10.15468/dl.sqj23d
title: Occurrence Download

description: A dataset containing 5739 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Erophaca Boiss."
 ]
}

 The dataset includes 5739 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000552-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15336753
title: Genome of Pseudomonas aeruginosa strain 1-54

description: Genome of Pseudomonas aeruginosa strain 1-54. The strain was used in study Saito and McIlvin 2025. https://www.biorxiv.org/content/10.1101/2025.01.15.633287v2
DOI: 10.5281/zenodo.15336754
title: Genome of Pseudomonas aeruginosa strain 1-54

description: Genome of Pseudomonas aeruginosa strain 1-54. The strain was used in study Saito and McIlvin 2025. https://www.biorxiv.org/content/10.1101/2025.01.15.633287v2
DOI: 10.5281/zenodo.15426225
title: Observing Bethe strings in an attractive Bose gas far from equilibrium

description: Bethe strings are bound states of constituent particles in a variety of interacting many-body one-dimensional (1D) integrable quantum models relevant to magnetism, nanophysics, cold atoms and beyond. As emergent fundamental excitations, they are predicted to collectively reshape observable equilibrium and dynamical properties. Small individual Bethe strings have recently been observed in quantum magnets and superconducting qubits. However, creating states featuring intermixtures of many, including large, strings remains an outstanding experimental challenge. Here, using nearly integrable ultracold Bose gases, we realize such intermixtures of Bethe strings out of equilibrium, by dynamically tuning interactions from repulsive to attractive. We measure the average binding energy of the strings, revealing the presence of bound states of more than six particles. We find further evidence for them in the momentum distribution and in Tan’s contact, connected to the correlated density. Our data quantitatively agree with predictions from generalized hydrodynamics (GHD). Manipulating intermixtures of Bethe strings opens new avenues for understanding quantum coherence, nonlinear dynamics and thermalization in strongly-interacting 1D systems.