cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.tk0b8/35
title: Anterolateral (right) view of open mouth and keel-shaped pectinate lamella of the mandible of I. tobini n. sp. (Fig. 14C)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/36
title: Anterolateral (right) view of mandible of I. tobini n. sp. with base of external teeth a circular socket (Fig. 14D)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/37
title: Antennomere 7 of I. tobini n. sp. (Fig. 15A)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/38
title: Dorsolateral (left) view of rings 10 – 14 of I. tobini n. sp. (Fig. 15E)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.0b707/1
title: All data files

description: All data files (CSV files) for each figure in paper along with supporting files.
DOI: 10.5061/dryad.23gt0/1
title: Feeding rate data

description: In this file, feeding rates and 'off-time' data of the analyses regarding feeding rates and perching high on bushes or grasses are included
DOI: 10.5061/dryad.23gt0/2
title: Incubation pattern

description: This file contains the data for of the binomial analysis of sex specific incubation pattern of coucals
DOI: 10.5061/dryad.23gt0/3
title: Ibutton incubation data

description: This file contains the ibutton data used for the analysis of absence bouts, total absence duration, and the diurnal pattern of incubation in black coucals and white-browed coucals.
DOI: 10.5061/dryad.23gt0/4
title: Growth rates

description: This file contains the body mass and tarsus length data which form the basis of the growth rate analysis of black coucals and white-browed coucals
DOI: 10.5061/dryad.28713/1
title: RSOS-Supporting data for figures
DOI: 10.5061/dryad.3q7c9/1
title: Water quality
DOI: 10.5061/dryad.3q7c9/2
title: Perch diet
DOI: 10.5061/dryad.3q7c9/3
title: Roach diet
DOI: 10.5061/dryad.46092/8
title: GMA_30July2013_CONVERT_pac5Feb2014_STRUCTURE

description: Microsatellite data in STRUCTURE format for Gillichthys mirabilis
DOI: 10.5061/dryad.46092/9
title: QMA_26August2013_PACb_CONVERT_5Feb2014_STRUCTURE

description: Microsatellite data in STRUCTURE format for Quietula y-cauda
DOI: 10.5061/dryad.47200/1
title: Metadata and Data for Root et al. Ecological Applications

description: Root et al. 2016 Ecological ApplicationsMetadata6 tables are associated with this studyMothCommunities2012.csv and MothCommunities2013.csv include moth community data.	Preliminary column names are self-evident and include the units. “richness” is the species richness of moths sampled, and the “totabund” is the total abundance of moths sampled. Following columns are for each moth species headed by their scientific names, and numbers represent the count sampled.MothSpeciesTraits.csv includes the characteristics of the moths.	The first column, “Sci” is the scientific name of the moth with genus.species. “family” includes the family names, and “FamShort” is the abbreviated family name. “specialist” refers to whether the species specializes on one family of plants or many families of plants (then considered a “generalist”). “FineFeed” includes the family of plants for specialist feeders. “CoarseFeed” is the coarse feeding group and includes hardwoods, herbs, grasses, conifers, lichens and ferns. “Total” is the total abundance of that species in the dataset. “Control”, “light”, “moderate”, and “intensive” are the abundances in each treatment.PlantCommunity.csv includes the plant community data.	“standyear” includes the name of the stand with a “.” separating it from the sampling year. Acronyms for each plant species are the headers for all other columns. Numbers represent the average cover in quadrats in each stand by year combination.PlantCategories.csv includes the category of plants used for analysis. The “Plants” column has the acronyms used in “PlantCommunity.csv”. The “Group” has the category for each plant, including Coni (conifer), Hdwd (hardwood), Fern, Forbes (herbaceous non-graminoids), and grass (graminoids).StandCovariates.csv has the characteristics of the stands. Column names should be self-evident and include corrdinates, elevation, area, aspect, slope, and blocks.
DOI: 10.5061/dryad.5cd3m/1
title: Muiruri & Koricheva_Oikos 2016_ Dryad Data
DOI: 10.5061/dryad.7cv4g/10
title: HBH_variable_2.r2.fastq

description: fastq, raw reads from coral of Houbihu with variable temperature conditions#2 (right side)
DOI: 10.5061/dryad.7cv4g/11
title: HBH_variable_4.r1.fastq

description: raw reads from coral of Houbihu with variable temperature conditions#4 (left side)
DOI: 10.5061/dryad.7cv4g/3
title: HBH_stable_4.r1.fastq

description: raw reads from coral of Houbihu with stable temperature conditions#4 (left side)
DOI: 10.5061/dryad.7cv4g/4
title: HBH_stable_4.r2.fastq

description: raw reads from coral of Houbihu with stable temperature conditions#4 (right side)
DOI: 10.5061/dryad.7cv4g/5
title: HBH_stable_5.r1.fastq

description: raw reads from coral of Houbihu with stable temperature conditions#5 (left side)
DOI: 10.5061/dryad.7cv4g/6
title: HBH_stable_5.r2.fastq

description: raw reads from coral of Houbihu with stable temperature conditions#5 (right side)
DOI: 10.5061/dryad.7cv4g/7
title: HBH_variable_1.r1.fastq

description: raw reads from coral of Houbihu with variable temperature conditions#1 (left side)
DOI: 10.5061/dryad.7cv4g/8
title: HBH_variable_1.r2.fastq

description: raw reads from coral of Houbihu with variable temperature conditions#1 (right side)
DOI: 10.5061/dryad.7cv4g/9
title: HBH_variable_2.r1.fastq

description: raw reads from coral of Houbihu with variable temperature conditions#2 (left side)
DOI: 10.5061/dryad.bj82r/10
title: Disholcaspis opsin sequences

description: Alignment of Disholcaspis opsin sequences
DOI: 10.5061/dryad.bj82r/8
title: Disholcaspis D2 sequences

description: Alignment of Disholcaspis 28S D2 sequences
DOI: 10.5061/dryad.bj82r/9
title: Disholcaspis ITS2 sequences

description: Alignment of Disholcaspis internal transcribed spacer 2 sequences
DOI: 10.5061/dryad.dg8f3/1
title: Bayescan_Fdist2.tar.gz

description: This archive contains files used by Pritchard et al. (2016) for Fst outlier analyses:Index.txt - index of SNPs.Bayescan*.in - Bayescan input files, SNPs in index order.Fdist*.in -Fdist2 input files, SNPs in index order.datacal.c; fdist2.c; Original_README_fdist2 - Fdist2 source code & information.R_code_for_analysing_Fdist2_output.txt - modified R code from Lotterhos & Whitlock (2014).See README file in archive for further information.
DOI: 10.5061/dryad.dg8f3/2
title: Genotyping_allelotyping.tar.gz

description: This archive contains the following data files for Pritchard et al. (2016):B_allele_freq_Naatamo_pools.csv: Uncorrected B allele frequencies for the Naatamo pools.B_allele_freq_New_Teno_pools.csv: Uncorrected B allele frequencies for the New Teno mainstem pools. B_allele_freq_Teno_Finnmark_pools.csv: Uncorrected B allele frequencies for the old Teno and Finnmark pools. B_allele_freqs_all_pops.csv: Corrected B allele frequencies for all populations.Individuals_and_pooling.csv: Details of genotyped individuals.Pritchardetal_genotypes.map; Pritchardetal_genotypes.ped: Individual genotypes in PLINK format.See README file in archive for further information.
DOI: 10.5061/dryad.dg8f3/3
title: Simupop_code.tar.gz

description: This archive contains Python code for simulating populations using the package simuPOP, plus additional data files, used in Pritchard et al. (2016):*.py: code for simulating test or reference individuals.Estimated_allele_frequencies.csv: estimated frequencies of the 200 discriminatory alleles, from Table S3.Allele_frequencies_for_simulations.csv: adjusted allele frequencies used for simulations, from Table S3.See README file in archive for further information.
DOI: 10.5061/dryad.dg8f3/4
title: Hybrid_class_assignment.tar.gz

description: This archive contains code used for hybrid class assignments, and hybrid class assignment results for Pritchard et al. (2016):Code_for_hybrid_class_assigments.txt: code used to generate NewHybrids and Structure input files and parse results.Folder "Extra_required_files" contains text files required by the above code.Folder "Results" contains hybrid class assignment results.See README file in archive for further information.
DOI: 10.5061/dryad.dg8f3/5
title: Code_and_data_for_figures.tar.gz

description: This archive contains the ggplot2 code and data files required for making all the figures in Pritchard et al. (2016):Code_for_ggplot.txt contains annotated ggplot code for making figures.See README file in archive for further information.
DOI: 10.5061/dryad.dg8f3/6
title: PPC_correction.tar.gz

description: This archive (700MB) contains the following data files for Pritchard et al. (2016), used for calculating and applying the PPC correction:R_code for_PPC_correction.txt: Annotated R code for calculating PPC correction coefficients from data in CALL.txt and INT.txt.CALL.txt: File of genotype calls.INT2.txt: File of A and B allele probe intensities.PPC_correction_coefficients.csv: PPC correction coefficients returned for each SNP. See README file in archive for further information.
DOI: 10.5061/dryad.fp00p/1
title: Data metabolism and growth, daphnia pulex

description: Data for all figures used in the main document, as well as electronic supplementary material S2 and S3.
DOI: 10.5061/dryad.g1n25/11
title: Mach_op_costs

description: Econ data file: "Mach_op_costs.csv" — Operation costs for machinery activities, by implement type (determined from Illinois FarmDocs calculator tool, see Trlica et al. (2017))
DOI: 10.5061/dryad.g1n25/12
title: Mach_price_index_1990

description: Econ data file: "Mach_price_index_1990.csv" — Machinery Totals (1990-index), index for Price Paid 1975-1990 (USDA NASS Quick Stats download).
DOI: 10.5061/dryad.g1n25/13
title: Mach_price_index_2011

description: Econ data file: "Mach_price_index_2011.csv" — Machinery Totals, index for Price Paid (2011-index), 1990-2014 (USDA NASS Quick Stats download).
DOI: 10.5061/dryad.g1n25/14
title: Master_Yield_1970-2014_econ

description: Econ data file: "Master_Yield_1970-2014.csv" — table of corn yield and ancillary field data for 1970–2014 seasons. Data file identical to file used in Cook and Trlica (2016) (see Dryad Digital Repository doi:10.5061/dryad.7920c).  Data missing entirely for years 1981, 2008 due to crop loss.
DOI: 10.5061/dryad.g1n25/15
title: Para_2008_2001_prices

description: Econ data file: "Para_2008_2001_prices.csv" — Paraquat price (2.5 lb ai/U.S. gal), U.S. Average, 2001–2008 (USDA NASS Quick Stats download).
DOI: 10.5061/dryad.g1n25/16
title: PPITW_2013-1975-1990index

description: Econ data file: "PPITW_2013-1975-1990index.csv" — PPITW (Prices Paid Index for Commodities and Services, Interest, Taxes, and Farm Wage Rates) (1990=100) for 1975–2013 (USDA NASS Quick Stats download).
DOI: 10.5061/dryad.g1n25/17
title: PPITW_2014-1990-2011index

description: Econ data file: "PPITW_2014-1990-2011index.csv" — PPITW (2011=100) for 1990–2014 (USDA NASS QuickStats download).
DOI: 10.5061/dryad.g1n25/18
title: soy_price_USDANASS

description: Econ data file: "soy_price_USDANASS.csv" — Soybeans sale price (nominal $/bu), U.S. Average, 1970-2014 (USDA NASS Quick Stats download).
DOI: 10.5061/dryad.g1n25/19
title: Table7_Fert_prices_1960

description: Econ data file: "Table7_Fert_prices_1960.csv" — Table 7 from report "Fertilizer Use and Price" listing price (nominal $/ton) of triple superphosphate (44-46%P) and potash/potassium chloride (60% K) 1960–2013 (see USDA Economic Research Service, https://www.ers.usda.gov/data-products/fertilizer-use-and-price.aspx)
DOI: 10.5061/dryad.g1n25/20
title: Urea_2014_1970_price

description: Econ data file: "Urea_2014_1970_price.csv" — Urea price (nominal $/ton), U.S. Average, 1970–2014 (USDA NASS Quick Stats download).
DOI: 10.5061/dryad.js3ph/1
title: Supplemental Data 1: Character Matrix for Preliminary Camerate Phylogenetic Analysis

description: Phylogenetic character matrix for the 26 crinoid and blastozoan taxa included in the preliminary analysis.
DOI: 10.5061/dryad.js3ph/2
title: Supplemental Data 2: Character Matrix for Comprehensive Camerate Phylogenetic Analysis

description: Phylogenetic character matrix for the 52 camerate taxa included in the comprehensive analysis.
DOI: 10.5061/dryad.js3ph/3
title: Supplemental Data 3: Strict Consensus Tree from Unweighted Comprehensive Analysis

description: Strict consensus of 801 trees from the unweighted comprehensive parsimony analysis.
DOI: 10.5061/dryad.js3ph/4
title: Supplemental Data 4: Tree from Reweighted Comprehensive Analysis, Rooted with Cnemecrinus

description: Single most parsimonious tree recovered from the reweighted comprehensive parsimony analysis, rooted using Cnemecrinus.
DOI: 10.5061/dryad.kt182/1
title: Plant data and virus detection in switchgrass experiment

description: See ReadMe file for complete description of columns
DOI: 10.5061/dryad.m56c1/1
title: Transport of bacteria into oysters by aggregates Data and Code

description: Data and code needed to run models and generate manuscript figures.
DOI: 10.5061/dryad.m5r3n/1
title: Ringelman et al. 2016 Oikos data

description: These are the data files used in the analysis.  There are four sheets: one each for the kernel overlap, field-level correlation, 400m grid cell correlation, and 200m grid-cell correlation analysis.
DOI: 10.5061/dryad.n49qg/1
title: Codes of the spatially structured and unstructured neutral models

description: We provide here the algorithms used to model neutral dynamics on spatially-structured and unstructured archipelagos, as introduced in the main text and Supporting Information 3. These algorithms are coded in Java language, and their structure and use is explained in the file Readme.txt.
DOI: 10.5061/dryad.n863q/1
title: Data_preyselection_PlosOne

description: Territory: wolf territorypreytype: moose=1, roe deer=2moosedensity: density of moose per 10 km2roedensity: roe deer density per 10 km2daynumber: the number of days after the 1th of Januarytimesincekill: the number of days since their last kill of moose or roe deernutritionalstatus: the nutritional status of wolves at the time of killsnowdepthm: snow dept in meters
DOI: 10.5061/dryad.nh109/1
title: Virtual Cursor Task

description: Left and right virtual cursor control data set.
DOI: 10.5061/dryad.qt5bd/1
title: Annual body mass, reproduction and spring dates

description: Annual estimates of the variables used in the analyses of the Svalbard and West Greenland reindeer data. Column description Svalbard data: bm = mean adult female body mass (kg), SE_bm = standard error of bm, pp = proportion of marked adult females pregnant in April, N_pp = the sample size pp is based upon, pc = proportion of adult females observed with a calf at foot in summer, N_ pc = the sample size pc is based upon, so = Offspring survival from April till summer, N_so = the sample size so is based upon, T50 and EVI-spring = The date of spring onset based on each respective proxy. Column description West Greenland data: PCmax = Maximum estimate of calf production before significant early calf mortality. PCfinal = Final estimate of calf production after early calf mortality, M = Early calf mortality ([PCmax – PCfinal]/PCmax), pcmax = proportion of females with a calf just after calving and before significant early calf mortality, pcfinal = proportion of females with a calf after early calf mortality, sc = offspring survival.
DOI: 10.5061/dryad.r620r/1
title: Experiment 1 data

description: S1: GFMT performance and sleep measure data from Experiment 1.
DOI: 10.5061/dryad.r620r/2
title: Experiment 2 data

description: S2: GFMT performance and sleep measure data for Experiment 2
DOI: 10.5061/dryad.r7fs8/1
title: Phased haplotpyes -- callable regions

description: The .tar archive contains phasing information for each sample.  The files *.mask.bed.gz,  indicate the genomic regions for each sample deemed to be callable. Files are based on the GRCh37 reference genome assembly. This release contains phased data generated by Song et al. as well as reprocessing of previously published data (samples NA20847 (KITZMAN et al. 2011), HGDP01029 and HGDP00456 (MEYER et al. 2012)). Please see Song et al. 2016 for more information. The following files are included: HG02799.fosmid.phased.vcf.gz, HG02799.mask.bed.gz, HG03108.fosmid.phased.vcf.gz, HG03108.mask.bed.gz, HG03428.fosmid.phased.vcf.gz, HG03428.mask.bed.gz, HGDP00456.fosmid.phased.vcf.gz, HGDP00456.mask.bed.gz, HGDP01029.fosmid.phased.vcf.gz, HGDP01029.mask.bed.gz, NA12878.fosmid.phased.vcf.gz, NA12878.mask.bed.gz, NA19240.fosmid.phased.vcf.gz, NA19240.mask.bed.gz, NA20847.fosmid.phased.vcf.gz, NA20847.mask.bed.gz, NA21302.fosmid.phased.vcf.gz, NA21302.mask.bed.gz.
DOI: 10.5061/dryad.r7fs8/2
title: Fosmid Phased Haplotypes

description: The .tar archive contains phasing information for each sample.  The files *.mask.bed.gz indicate the genomic regions for each sample deemed to be callable. Files are based on the GRCh37 reference genome assembly. This release contains phased data generated by Song et al. as well as reprocessing of previously published data (samples NA20847 (KITZMAN et al. 2011), HGDP01029 and HGDP00456 (MEYER et al. 2012)). Please see Song et al. 2016 for more information. The following files are included: HG02799.fosmid.phased.vcf.gz, HG02799.mask.bed.gz, HG03108.fosmid.phased.vcf.gz, HG03108.mask.bed.gz, HG03428.fosmid.phased.vcf.gz, HG03428.mask.bed.gz, HGDP00456.fosmid.phased.vcf.gz, HGDP00456.mask.bed.gz, HGDP01029.fosmid.phased.vcf.gz, HGDP01029.mask.bed.gz, NA12878.fosmid.phased.vcf.gz, NA12878.mask.bed.gz, NA19240.fosmid.phased.vcf.gz, NA19240.mask.bed.gz, NA20847.fosmid.phased.vcf.gz, NA20847.mask.bed.gz, NA21302.fosmid.phased.vcf.gz, NA21302.mask.bed.gz.
DOI: 10.5061/dryad.sj3mp/1
title: Adherence to the Tobacco Control Act, 2007: Availability of workplace policy on tobacco use in bars and restaurants in Nairobi, Kenya,

description: Data from: Adherence to the Tobacco Control Act, 2007: availability of workplace policy on tobacco use in bars and restaurants in Nairobi, Kenya was collected in the field using an interviewer administered structured questionnaire. Data was then entered into SPSS version 17.0 and analyzed. No abbreviations have been used in the column headings. The only abbreviation used is N/A, defined as Not applicable.
DOI: 10.5061/dryad.t2g67/1
title: Dryad submission Miller McDonald Moore

description: Provides sire and dam ID's as well as diet treatment and morphological trait measurements
DOI: 10.5061/dryad.t8vg3/1
title: SaguaroCensusData csv

description: Data included are for all plants in 6 4-hectare plots from 1942 to 2016. Identifiers for plot and plant are associated with height, nurse plant cover, height, branches, year of establishment and year of death.
DOI: 10.5061/dryad.t8vg3/2
title: SaguaroYearHeightGrowth csv

description: Annual height data for saguaros discovered after plot establishment.
DOI: 10.5061/dryad.t8vg3/3
title: HeightClasses1942Survivorship csv

description: Annual survival by height class for Figure 7
DOI: 10.5061/dryad.tk0b8/39
title: Ventrolateral (right) view of posterior rings of I. tobini n. sp. (Figs 15F, 17A)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/40
title: Lateral (right) view of right ozopore from ring 106 (Fig. 16C)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/41
title: Dorsal view of trunk (Fig. 16D)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/42
title: Ozopore of I. tobini n. sp. (Fig. 16E)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/43
title: Ventral view of left postgonopodal legs and eversible sacs of I. tobini n. sp. (Fig. 17C)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/44
title: Ventrolateral (right) view of second leg pair of I. tobini n. sp. with posteriorly oriented coxal gonapophyses (legs broken off at prefemur-femur joint) (Fig. 18B)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/45
title: Medial view of right anterior gonopod of I. tobini n. sp. (Fig. 18C)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/46
title: Anteroventral view of gonopods of I. tobini n. sp. in situ, close-up of right anterior gonopod (Fig. 18F)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.5061/dryad.tk0b8/47
title: Anteroventral view of left gonopod of I. tobini n. sp. in situ (Fig. 19A)

description: Scanning electron micrograph taken of palladium/platinum coated structures with an FEI Quanta 600 FEG environmental scanning electron microscope.
DOI: 10.15156/bio/sh077529.07fu
title: SH077529.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.