cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3807951
title: 20150722_QE5_UPLC8_RJC_COLLAB_DB_4011_01.raw

description: Metaproteomic profiling of saliva in subjects with periodontitis, dental caries and orally healthy controls
DOI: 10.6084/m9.figshare.3807951.v1
title: 20150722_QE5_UPLC8_RJC_COLLAB_DB_4011_01.raw

description: Metaproteomic profiling of saliva in subjects with periodontitis, dental caries and orally healthy controls
DOI: 10.6084/m9.figshare.3807948
title: 20150722_QE5_UPLC8_RJC_COLLAB_DB_4015_01.raw

description: Metaproteomic profiling of saliva in subjects with periodontitis, dental caries and orally healthy controls
DOI: 10.6084/m9.figshare.3807948.v1
title: 20150722_QE5_UPLC8_RJC_COLLAB_DB_4015_01.raw

description: Metaproteomic profiling of saliva in subjects with periodontitis, dental caries and orally healthy controls
DOI: 10.6084/m9.figshare.3807939
title: 20150722_QE5_UPLC8_RJC_COLLAB_DB_4007_01.raw

description: Metaproteomic profiling of saliva in subjects with periodontitis, dental caries and orally healthy controls
DOI: 10.6084/m9.figshare.3807939.v1
title: 20150722_QE5_UPLC8_RJC_COLLAB_DB_4007_01.raw

description: Metaproteomic profiling of saliva in subjects with periodontitis, dental caries and orally healthy controls
DOI: 10.6084/m9.figshare.3807936
title: 20150722_QE5_UPLC8_RJC_COLLAB_DB_4003_01.raw

description: Metaproteomic profiling of saliva in subjects with periodontitis, dental caries and orally healthy controls
DOI: 10.6084/m9.figshare.3807936.v1
title: 20150722_QE5_UPLC8_RJC_COLLAB_DB_4003_01.raw

description: Metaproteomic profiling of saliva in subjects with periodontitis, dental caries and orally healthy controls
DOI: 10.6084/m9.figshare.3807909
title: Making Wikidata the central hub for linked data in the life sciences

description: Slides from a presentation given at BWise; a seminar on Bioinformatics @ Wageningen University
DOI: 10.6084/m9.figshare.3807909.v1
title: Making Wikidata the central hub for linked data in the life sciences

description: Slides from a presentation given at BWise; a seminar on Bioinformatics @ Wageningen University
DOI: 10.6084/m9.figshare.3807894
title: Leuven Embedded Figures Test Context Shapes

description: The context shapes of the Leuven Embedded Figures Test.<br><br>The context shapes are coded with a unique ID that indicates with which target shape they should be combined.<br> The target shapes are indicated by an ID ranging from: 000 – 063. The context shapes are indicated by an ID. The first three digits of this ID will correspond to a unique target shape. For instance, target shape “000” is made to be combined with the context shapes with ID code “000a”, “000b” and “000c”. The letter (ranging from a to c) indicates whether the shape contains the target or is a distractor: “a” always contains the target and “b” and “c” are always contexts that do not contain the target shape (wrong alternatives). <br>
DOI: 10.6084/m9.figshare.3807891
title: Leuven Embedded Figures Test Context Shapes

description: This stimulus set contains the context shapes of the Leuven Embedded Figures Test.<br><br>The shapes are given a file name that indicates with what target shape they should be combined and that also indicates which one contains the target shape and which two contexts do not contain the target shape.<br> The target shapes are indicated by an ID ranging from: 000 – 063. The context shapes are indicated by an ID. The first three digits of this ID will correspond to a unique target shape. For instance, target shape “000” is made to be combined with the context shapes with ID code “000a”, “000b” and “000c”. The letter (ranging from a to c) indicates whether the shape contains the target or is a distractor: “a” always contains the target and “b” and “c” are always contexts that do not contain the target shape (wrong alternatives). <br>
DOI: 10.6084/m9.figshare.3807885
title: Leuven Embedded Figures Test Target Shapes

description: This set of images contains the 16 unique target shapes that were presented to observers in the context of the Leuven Embedded Figures Test. <br><br>For each of these 16 unique target shapes there are 4 repetitions, with a unique file name to make target and context shape presentation easier to organize.<br>
DOI: 10.5517/ccdc.csd.cc247z6l
title: CCDC 1973869: Experimental Crystal Structure Determination

description: Related Article: Bin Li, Qing-Qing Yan, Guo-Ping Yong|2020|J.Mater.Chem.C|8|11786|doi:10.1039/C9TC07030C
DOI: 10.5517/ccdc.csd.cc24dxwc
title: CCDC 1978633: Experimental Crystal Structure Determination

description: Related Article: Xin Xu, Dong Chen, Hongzhen Li, Mi Yan, Ying Xiong, Haixia Zhao, Rong Xu|2020|RSC Advances|10|11939|doi:10.1039/D0RA01182G
DOI: 10.5517/ccdc.csd.cc24xs40
title: CCDC 1993862: Experimental Crystal Structure Determination

description: Related Article: Francisco J. Ballester, Enrique Ortega, Delia Bautista, M. Dolores Santana, José Ruiz|2020|Chem.Commun.|56|10301|doi:10.1039/D0CC02417A
DOI: 10.5517/ccdc.csd.cc257rz5
title: CCDC 2003467: Experimental Crystal Structure Determination

description: Related Article: Mirosław Mączka, Anna Gągor, Alessandro Stroppa, João Nuno Gonçalves, Jan K. Zaręba, Dagmara Stefańska, Adam Pikul, Marek Drozd, Adam Sieradzki|2020|J.Mater.Chem.C|8|11735|doi:10.1039/D0TC02794D
DOI: 10.5517/ccdc.csd.cc258bmf
title: CCDC 2004014: Experimental Crystal Structure Determination

description: Related Article: Mirosław Mączka, Anna Gągor, Alessandro Stroppa, João Nuno Gonçalves, Jan K. Zaręba, Dagmara Stefańska, Adam Pikul, Marek Drozd, Adam Sieradzki|2020|J.Mater.Chem.C|8|11735|doi:10.1039/D0TC02794D
DOI: 10.5517/ccdc.csd.cc25b7sk
title: CCDC 2005848: Experimental Crystal Structure Determination

description: Related Article: Mirosław Mączka, Anna Gągor, Alessandro Stroppa, João Nuno Gonçalves, Jan K. Zaręba, Dagmara Stefańska, Adam Pikul, Marek Drozd, Adam Sieradzki|2020|J.Mater.Chem.C|8|11735|doi:10.1039/D0TC02794D
DOI: 10.5517/ccdc.csd.cc25b7tl
title: CCDC 2005849: Experimental Crystal Structure Determination

description: Related Article: Mirosław Mączka, Anna Gągor, Alessandro Stroppa, João Nuno Gonçalves, Jan K. Zaręba, Dagmara Stefańska, Adam Pikul, Marek Drozd, Adam Sieradzki|2020|J.Mater.Chem.C|8|11735|doi:10.1039/D0TC02794D
DOI: 10.17632/pyxd8t5js5.7
title: Data for: From deforestation to afforestation: Effect of slopeland use policies on land use/cover change in Taiwan

description: This data contains SPSS and GIS files, which regards the information of slopland in Taiwan.
DOI: 10.17632/4rj7k22wh6.7
title: Data for: From deforestation to afforestation: Effect of slopeland use policies on land use/cover change in Taiwan

description: slopeland land-use change in Taiwan
DOI: 10.4225/03/57cf976d89d03
title: Using Infographics for Engaging Visual Communication - ALLA Conference Workshop

description: Communicating with patrons to provide relevant and useful information is an important part of a librarian’s role. However, equally important is the ability to present this information in an engaging way, so that it can be understood and applied by those patrons. Many useful guides and instructions are under-utilised. The majority of these text heavy word documents, no matter how useful, don’t get the message across effectively. For the time-poor user, they appear dated and convoluted. Fortunately, there is a new approach to this problem, known as ‘infographics’. These graphic representations of information catch the user’s attention and communicate in a simple and modern manner. Text can be replaced with images that convey the same message. Less text means the information can be quickly scanned and is more likely to be retained. The bright modern designs of infographics are engaging and eye-catching. Infographics can address a variety of needs; there are printable infographics that fit neatly onto a page, or digital, interactive and sharable infographics. Some infographics can be used in presentation mode, selecting only sections of the entire image at a time. Infographics can also be used to present data from feedback surveys or for an annual report using their graphs function, or for conference posters, signage, event invitations, and more. At Monash University Library, we have used infographics extensively in our teaching and learning program. Infographics are very easy to create, using any of the freely available platforms online. Everything is fully customisable – from the text, to the background, images and colour scheme. You can make them as simple or as complicated as you require. This workshop focuses on two of these free online platforms; <i>Piktochart</i> and <i>Canva</i>. The basic functionalities of the programs are covered, and the benefits and limitations of each are compared. Every participant in the workshop will be able to work through the entire process of creating an infographic in each platform. Participants will leave with the skills to build a range of infographics for a variety of purposes.
DOI: 10.6084/m9.figshare.3807711
title: Dataset of photos depicting needle-like protrusions on a tree in Singapore

description: Disturbing needle-like protrusions were observed on the trunk of a tree in Singapore. Photographs from this dataset are those of a single tree at the outlet road towards Jalan Bukit Merah, within the Singapore General Hospital campus. Plant biologists and other researchers around the world can work on the enigma immediately. A 5 megapixel smartphone camera was used to capture the photos.
DOI: 10.6084/m9.figshare.3807711.v2
title: Dataset of photos depicting needle-like protrusions on a tree in Singapore

description: Disturbing needle-like protrusions were observed on the trunk of a tree in Singapore. Photographs from this dataset are those of a single tree at the outlet road towards Jalan Bukit Merah, within the Singapore General Hospital campus. Plant biologists and other researchers around the world can work on the enigma immediately. A 5 megapixel smartphone camera was used to capture the photos.
DOI: 10.6084/m9.figshare.3807711.v1
title: Dataset of photos depicting needle-like protrusions on a tree inSingapore

description: Disturbing needle-like protrusions were observed on the trunk of a tree in Singapore. Photographs from this dataset are those of a single tree at the outlet road towards Jalan Bukit Merah, within the Singapore General Hospital campus. Plant biologists and other researchers around the world can work on the enigma immediately. A 5 megapixel smartphone camera was used to capture the photos.
DOI: 10.6084/m9.figshare.3807612
title: Laser assisted zona hatching does not lead to immediate impairment in human embryo quality and metabolism

description: Laser assisted zona hatching (LAH) is a routinely used therapeutic intervention in assisted reproductive technology for patients with poor prognosis. However, results are not conclusive in demonstrating the benefits of zona hatching in improving the pregnancy rate. Recent observations on LAH induced genetic instability in animal embryos prompted us to look into the effects of laser assisted zona hatching on the human preimplantation embryo quality and metabolic uptake using high resolution nuclear magnetic resonance (NMR) technology. This experimental prospective study included fifty embryos from twenty-five patients undergoing intra cytoplasmic sperm injection. Embryo quality assessment followed by profiling of spent media for the non-invasive evaluation of metabolites was performed using NMR spectroscopy 24 hours after laser treatment and compared with that of non-treated sibling embryos. Both cell number and embryo quality on day 3 of development did not vary significantly between the two groups at 24 hours post laser treatment interval. Time lapse monitoring of the embryos for 24 hours did not reveal blastomere fragmentation adjacent to the point of laser treatment. Similarly, principal component analysis of metabolites did not demonstrate any variation across the groups. These results suggest that laser assisted zona hatching does not affect human preimplantation embryo morphology and metabolism at least until 24 hours post laser assisted zona hatching. However, studies are required to elucidate laser induced metabolic and developmental changes at extended time periods. <b>Abbreviations</b>: AH: assisted hatching; ART: assisted reproductive technology; DNA: deoxy-ribo nucleic acid; LAH: laser assisted hatching; MHz: megahertz; NMR: nuclear magnetic resonance; PCA: principal component analysis; PGD: preimplantation genetic diagnosis; TLM: time lapse monitoring
DOI: 10.6084/m9.figshare.3807612.v1
title: Laser assisted zona hatching does not lead to immediate impairment in human embryo quality and metabolism

description: Laser assisted zona hatching (LAH) is a routinely used therapeutic intervention in assisted reproductive technology for patients with poor prognosis. However, results are not conclusive in demonstrating the benefits of zona hatching in improving the pregnancy rate. Recent observations on LAH induced genetic instability in animal embryos prompted us to look into the effects of laser assisted zona hatching on the human preimplantation embryo quality and metabolic uptake using high resolution nuclear magnetic resonance (NMR) technology. This experimental prospective study included fifty embryos from twenty-five patients undergoing intra cytoplasmic sperm injection. Embryo quality assessment followed by profiling of spent media for the non-invasive evaluation of metabolites was performed using NMR spectroscopy 24 hours after laser treatment and compared with that of non-treated sibling embryos. Both cell number and embryo quality on day 3 of development did not vary significantly between the two groups at 24 hours post laser treatment interval. Time lapse monitoring of the embryos for 24 hours did not reveal blastomere fragmentation adjacent to the point of laser treatment. Similarly, principal component analysis of metabolites did not demonstrate any variation across the groups. These results suggest that laser assisted zona hatching does not affect human preimplantation embryo morphology and metabolism at least until 24 hours post laser assisted zona hatching. However, studies are required to elucidate laser induced metabolic and developmental changes at extended time periods. <b>Abbreviations</b>: AH: assisted hatching; ART: assisted reproductive technology; DNA: deoxy-ribo nucleic acid; LAH: laser assisted hatching; MHz: megahertz; NMR: nuclear magnetic resonance; PCA: principal component analysis; PGD: preimplantation genetic diagnosis; TLM: time lapse monitoring
DOI: 10.6084/m9.figshare.3807603
title: A Mechanism Reduction Method Integrating Path Flux Analysis with Multi Generations and Sensitivity Analysis

description: A novel mechanism reduction method that integrates path flux analysis with multi generations and sensitivity analysis (MPFASA) is proposed to reduce the complex detailed chemistry and to generate skeletal mechanisms. At first, the path flux analysis with multi generations (MPFA) method is used to efficiently reduce detailed mechanisms; then the sensitivity analysis (SA) method is applied to further eliminate the redundant species and their related reactions on the basis of the skeletal chemistry obtained by the MPFA method. Detailed mechanisms of methane and <i>n</i>-heptane are reduced by the MPFASA method, which are validated in the context of autoignition and perfectly stirred reactor for methane/air and <i>n</i>-heptane/air mixtures, over a wide range of operating conditions. The comparison shows that the skeletal mechanisms generated by the MPFASA method can well reproduce the results of detailed mechanisms and contain a much smaller number of species and reactions than those obtained by using the MFPA method only. It is illustrated that the MPFASA approach can overcome the shortcomings of the MPFA and SA methods and can be applied to obtain further reduced skeletal mechanisms in reactive flow modeling.
DOI: 10.6084/m9.figshare.3807603.v1
title: A Mechanism Reduction Method Integrating Path Flux Analysis with Multi Generations and Sensitivity Analysis

description: A novel mechanism reduction method that integrates path flux analysis with multi generations and sensitivity analysis (MPFASA) is proposed to reduce the complex detailed chemistry and to generate skeletal mechanisms. At first, the path flux analysis with multi generations (MPFA) method is used to efficiently reduce detailed mechanisms; then the sensitivity analysis (SA) method is applied to further eliminate the redundant species and their related reactions on the basis of the skeletal chemistry obtained by the MPFA method. Detailed mechanisms of methane and <i>n</i>-heptane are reduced by the MPFASA method, which are validated in the context of autoignition and perfectly stirred reactor for methane/air and <i>n</i>-heptane/air mixtures, over a wide range of operating conditions. The comparison shows that the skeletal mechanisms generated by the MPFASA method can well reproduce the results of detailed mechanisms and contain a much smaller number of species and reactions than those obtained by using the MFPA method only. It is illustrated that the MPFASA approach can overcome the shortcomings of the MPFA and SA methods and can be applied to obtain further reduced skeletal mechanisms in reactive flow modeling.
DOI: 10.6084/m9.figshare.3807564
title: Dual channel respiration data used for the paper: "Measuring and Characterizing the Human Nasal Cycle"

description: Here we provide dual channel respiration data collected and used for the paper: "Measuring and Characterizing the Human Nasal Cycle"We provide 33 files corresponding to 33 subjects. Each file contains data recorded during 24 hours. See READ_ME file for further details.
DOI: 10.6084/m9.figshare.3807564.v1
title: Dual channel respiration data used for the paper: "Measuring and Characterizing the Human Nasal Cycle"

description: Here we provide dual channel respiration data collected and used for the paper: "Measuring and Characterizing the Human Nasal Cycle"We provide 33 files corresponding to 33 subjects. Each file contains data recorded during 24 hours. See READ_ME file for further details.
DOI: 10.6084/m9.figshare.3807387
title: Argia data for niche models_BJLS.csv

description: Data of latitude and longitude used for niche models of sympatric Argia species.
DOI: 10.6084/m9.figshare.3807387.v1
title: Argia data for niche models_BJLS.csv

description: Data of latitude and longitude used for niche models of sympatric Argia species.
DOI: 10.6084/m9.figshare.3807345
title: Argia data of isolation experiment_BJLS.csv

description: Argia data of isolation barriers experiment for Biological Journal of the Linnean Society.
DOI: 10.6084/m9.figshare.3807345.v1
title: Argia data of isolation experiment_BJLS.csv

description: Argia data of isolation barriers experiment for Biological Journal of the Linnean Society.
DOI: 10.6084/m9.figshare.3807282
title: Stage 4S neuroblastoma tumors show a characteristic DNA methylation portrait

description: Stage 4S neuroblastoma (NB) is a special type of NB found in infants with metastases at diagnosis and is associated with an excellent outcome due to its remarkable capacity to undergo spontaneous regression. As genomics have not been able to explain this intriguing clinical presentation, we here aimed at profiling the DNA methylome of stage 4S NB to better understand this phenomenon. To this purpose, differential methylation analyses between International Neuroblastoma Staging System (INSS) stage 4S, stage 4 and stage 1/2 were performed, using methyl-CpG-binding domain (MBD) sequencing data of 14 stage 4S, 14 stage 4, and 13 stage 1/2 primary NB tumors (all <i>MYCN</i> non-amplified in order not to confound results). Stage 4S-specific hyper- and hypomethylated promoters were determined and further characterized for genomic localization and function by cytogenetic band enrichment, gene set enrichment, transcription factor target enrichment and differential RNA expression analyses. We show that specific chromosomal locations are enriched for stage 4S differentially methylated promoters and that stage 4S tumors show characteristic hypermethylation of specific subtelomeric promoters. Furthermore, genes involved in important oncogenic pathways, in neural crest development and differentiation, and in epigenetic processes are differentially methylated and expressed in stage 4S tumors. Based on these findings, we describe new biological mechanisms possibly contributing to the stage 4S-specific tumor biology and spontaneous regression. In conclusion, this study is the first to describe the highly characteristic stage 4S DNA methylome. These findings will open new avenues to further unravel the NB pathology in general and stage 4S disease specifically.
DOI: 10.6084/m9.figshare.3807282.v1
title: Stage 4S neuroblastoma tumors show a characteristic DNA methylation portrait

description: Stage 4S neuroblastoma (NB) is a special type of NB found in infants with metastases at diagnosis and is associated with an excellent outcome due to its remarkable capacity to undergo spontaneous regression. As genomics have not been able to explain this intriguing clinical presentation, we here aimed at profiling the DNA methylome of stage 4S NB to better understand this phenomenon. To this purpose, differential methylation analyses between International Neuroblastoma Staging System (INSS) stage 4S, stage 4 and stage 1/2 were performed, using methyl-CpG-binding domain (MBD) sequencing data of 14 stage 4S, 14 stage 4, and 13 stage 1/2 primary NB tumors (all <i>MYCN</i> non-amplified in order not to confound results). Stage 4S-specific hyper- and hypomethylated promoters were determined and further characterized for genomic localization and function by cytogenetic band enrichment, gene set enrichment, transcription factor target enrichment and differential RNA expression analyses. We show that specific chromosomal locations are enriched for stage 4S differentially methylated promoters and that stage 4S tumors show characteristic hypermethylation of specific subtelomeric promoters. Furthermore, genes involved in important oncogenic pathways, in neural crest development and differentiation, and in epigenetic processes are differentially methylated and expressed in stage 4S tumors. Based on these findings, we describe new biological mechanisms possibly contributing to the stage 4S-specific tumor biology and spontaneous regression. In conclusion, this study is the first to describe the highly characteristic stage 4S DNA methylome. These findings will open new avenues to further unravel the NB pathology in general and stage 4S disease specifically.
DOI: 10.6084/m9.figshare.3807111
title: Robust optimization based decision making in Energy systems

description: This presentation describes the Robust Optimization method and its application in Energy systems. The GAMS codes are provided.
DOI: 10.6084/m9.figshare.3807015
title: Electrochemical data for platinahelicene

description: Circular Voltammetry of platinahelicene in Bu4NPF6 acetontrile electrolyte.
DOI: 10.6084/m9.figshare.3807015.v1
title: Electrochemical data for platinahelicene

description: Circular Voltammetry of platinahelicene in Bu4NPF6 acetontrile electrolyte.
DOI: 10.6084/m9.figshare.3807012
title: PHOLED data of enantiopure and racemic platinahelicenes in OXD-7:PVK matrices

description: J-V-L graphs and CP-EL data
DOI: 10.6084/m9.figshare.3807012.v1
title: PHOLED data of enantiopure and racemic platinahelicenes in OXD-7:PVK matrices

description: J-V-L graphs and CP-EL data
DOI: 10.6084/m9.figshare.3807009
title: Absorption data of racemic platinahelicene films in OXD-7:PVK matrices

description: Absorption data of racemic platinahelicene films in OXD-7:PVK matrices
DOI: 10.6084/m9.figshare.3807009.v1
title: Absorption data of racemic platinahelicene films in OXD-7:PVK matrices

description: Absorption data of racemic platinahelicene films in OXD-7:PVK matrices
DOI: 10.6084/m9.figshare.3807006
title: Photoluminescence data of (-)-platinahelicene thin film in OXD-7:PVK 1:1 matrix

description: PL and CP-PL data