cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2bp0km
title: CCDC 2165150: Experimental Crystal Structure Determination

description: Related Article: Masaru Tanioka, Ayako Kuromiya, Rina Ueda, Tohru Obata, Atsuya Muranaka, Masanobu Uchiyama, Shinichiro Kamino|2022|Chem.Commun.|58|7825|doi:10.1039/D2CC02907C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bp0ln
title: CCDC 2165151: Experimental Crystal Structure Determination

description: Related Article: Masaru Tanioka, Ayako Kuromiya, Rina Ueda, Tohru Obata, Atsuya Muranaka, Masanobu Uchiyama, Shinichiro Kamino|2022|Chem.Commun.|58|7825|doi:10.1039/D2CC02907C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bp0mp
title: CCDC 2165152: Experimental Crystal Structure Determination

description: Related Article: Masaru Tanioka, Ayako Kuromiya, Rina Ueda, Tohru Obata, Atsuya Muranaka, Masanobu Uchiyama, Shinichiro Kamino|2022|Chem.Commun.|58|7825|doi:10.1039/D2CC02907C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2byrpr
title: CCDC 2173555: Experimental Crystal Structure Determination

description: Related Article: Christian Cristóbal, Daniel Gaviña, Inés Alonso, María Ribagorda, Juan C. Carretero, Carlos del Pozo, Javier Adrio|2022|Chem.Commun.|58|7805|doi:10.1039/D2CC02902B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2byrsv
title: CCDC 2173558: Experimental Crystal Structure Determination

description: Related Article: Christian Cristóbal, Daniel Gaviña, Inés Alonso, María Ribagorda, Juan C. Carretero, Carlos del Pozo, Javier Adrio|2022|Chem.Commun.|58|7805|doi:10.1039/D2CC02902B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bmntg
title: CCDC 2163856: Experimental Crystal Structure Determination

description: Related Article: Lea Dettling, Martin Papke, Julian A. W. Sklorz, Dániel Buzsáki, Zsolt Kelemen, Manuela Weber, László Nyulászi, Christian Müller|2022|Chem.Commun.|58|7745|doi:10.1039/D2CC02269A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bmnvh
title: CCDC 2163857: Experimental Crystal Structure Determination

description: Related Article: Lea Dettling, Martin Papke, Julian A. W. Sklorz, Dániel Buzsáki, Zsolt Kelemen, Manuela Weber, László Nyulászi, Christian Müller|2022|Chem.Commun.|58|7745|doi:10.1039/D2CC02269A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bmnwj
title: CCDC 2163858: Experimental Crystal Structure Determination

description: Related Article: Lea Dettling, Martin Papke, Julian A. W. Sklorz, Dániel Buzsáki, Zsolt Kelemen, Manuela Weber, László Nyulászi, Christian Müller|2022|Chem.Commun.|58|7745|doi:10.1039/D2CC02269A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3886/e175121
title: Employment-based contingency management for women arrested for prostitution

description: This study was a preliminary evaluation of the therapeutic workplace intervention in opioid dependent women arrested for prostitution. Participants (N = 37) were randomly assigned to a specialized diversion program, or the diversion program plus the therapeutic workplace for four months. To be included in the present study, participants were required to be enrolled in medication-assisted treatment (i.e., methadone or buprenorphine) for the treatment of opioid use disorder and referred to the study by social workers employed by a State’s Attorneys’ Office. Participants were paid $8.00 per hour for up to four hours each day. In addition, participants earned bonus pay based on performance on the job training programs. This bonus pay varied but was programmed to be approximately $2.00 per hour for average performance. Participants could track their earnings via their computer workstation and request to convert their electronic funds to gift cards of their choice as they saw fit. Access to the workplace (and thus wages) was contingent upon provision of a urine sample every Monday, Wednesday, and Friday. For the first two weeks, participants in the therapeutic workplace group could gain access to the workplace independent of the results of the urine toxicology test. Thereafter, drug abstinence reinforcement contingencies were implemented, starting with cocaine abstinence. Under this contingency, participants were required to submit cocaine-negative urine samples to access the workplace and maintain the maximum hourly wage. If the sample was positive for cocaine or the sample was not submitted, then the participant was not permitted to enter the workplace, and the rate of hourly pay was decreased to $1.00. Thereafter, each day that the participant gained access to the workplace their base pay was increased by $1.00 per hour until fully restored. When a participant successfully completed two consecutive weeks of cocaine abstinence, opioid abstinence contingencies were added. Similarly, after four consecutive weeks of cocaine and opioid abstinence, additional contingencies for cannabis, amphetamines, and PCP were added simultaneously. This terminal set of abstinence requirements included the complete panel of drugs that are typically used in pre-employment drug screening. Participants who submitted at least 10 drug negative urine samples across their last 12 submitted samples, and who attended a minimum of 10 days in the last 20 possible workdays were admitted to the four-month wage supplement program. Under the wage supplement program, participants who became employed in the community or who engaged in verifiable job search activities were paid $4 per hour for each hour of verified work or job searching, up to 40 hours per week. During this period, drug abstinence was verified by a drug testing of urine samples that were required once per week on average.
DOI: 10.3886/e175121v1
title: Employment-based contingency management for women arrested for prostitution

description: This study was a preliminary evaluation of the therapeutic workplace intervention in opioid dependent women arrested for prostitution. Participants (N = 37) were randomly assigned to a specialized diversion program, or the diversion program plus the therapeutic workplace for four months. To be included in the present study, participants were required to be enrolled in medication-assisted treatment (i.e., methadone or buprenorphine) for the treatment of opioid use disorder and referred to the study by social workers employed by a State’s Attorneys’ Office. Participants were paid $8.00 per hour for up to four hours each day. In addition, participants earned bonus pay based on performance on the job training programs. This bonus pay varied but was programmed to be approximately $2.00 per hour for average performance. Participants could track their earnings via their computer workstation and request to convert their electronic funds to gift cards of their choice as they saw fit. Access to the workplace (and thus wages) was contingent upon provision of a urine sample every Monday, Wednesday, and Friday. For the first two weeks, participants in the therapeutic workplace group could gain access to the workplace independent of the results of the urine toxicology test. Thereafter, drug abstinence reinforcement contingencies were implemented, starting with cocaine abstinence. Under this contingency, participants were required to submit cocaine-negative urine samples to access the workplace and maintain the maximum hourly wage. If the sample was positive for cocaine or the sample was not submitted, then the participant was not permitted to enter the workplace, and the rate of hourly pay was decreased to $1.00. Thereafter, each day that the participant gained access to the workplace their base pay was increased by $1.00 per hour until fully restored. When a participant successfully completed two consecutive weeks of cocaine abstinence, opioid abstinence contingencies were added. Similarly, after four consecutive weeks of cocaine and opioid abstinence, additional contingencies for cannabis, amphetamines, and PCP were added simultaneously. This terminal set of abstinence requirements included the complete panel of drugs that are typically used in pre-employment drug screening. Participants who submitted at least 10 drug negative urine samples across their last 12 submitted samples, and who attended a minimum of 10 days in the last 20 possible workdays were admitted to the four-month wage supplement program. Under the wage supplement program, participants who became employed in the community or who engaged in verifiable job search activities were paid $4 per hour for each hour of verified work or job searching, up to 40 hours per week. During this period, drug abstinence was verified by a drug testing of urine samples that were required once per week on average.
DOI: 10.25919/4xx6-4586
title: Parkes observations for project P1145 semester 2022APRS_05

description: Pulsar surveys find pulsars, but follow-up observations are crucial to establish the nature of the pulsars, including their spin-down rate, their magnetic field strength, their polarization properties and whether they are part of a binary system and therefore potentially interesting for further study. We aim to determine timing solutions for 26 pulsars discovered at Parkes but which have not been observed since their discovery.
DOI: 10.5281/zenodo.6824608
title: Amazona leucocephala zanfona 1

description: .
DOI: 10.5281/zenodo.6824607
title: Amazona leucocephala zanfona 1

description: .
DOI: 10.5281/zenodo.6824627
title: Cacatua alba zanfona 1

description: .
DOI: 10.5281/zenodo.6824626
title: Cacatua alba zanfona 1

description: .
DOI: 10.17632/98rf9psgvb.1
title: CPR - Early Insertion Effect of a Supraglottic Airway Device on CCF in simulated OHCA - Dataset

description: Dataset used in the CPR - Prehospital study (“Early Insertion Effect of a Supraglottic Airway Device on Chest Compression Fraction during Simulated Out-of-Hospital Cardiac Arrest: Randomized Controlled Trial ”)
DOI: 10.17632/58nmcw6jmr.1
title: Evaluation of the Implementation of the Family Caregiver Monitoring Model: A Quasi-experimental Study

description: Data collection was carried out through research in the files of patients with dependence, in the previous six months, either in the diagnosis phase or in the phase after the implementation of the intervention, of the nurses of two family health units.
Focuses/statements of diagnoses and interventions related to care provided to caregivers were identified.
Statistically significant changes were identified after the intervention was implemented, in the identification of the focus Caregiver role (p = 0.001); From the processes with an active recording of the foci and records in other phases of the nursing process (p = 0.002).
A significant statistical increase was found in the final assessment (p = 0.001) for the diagnostic domain of Caregiver Role.
The Instruct and Train actions showed a statistical significant decrease of records in the final assessment (p = 0.014 and p = 0.018, respectively). The Stimulate interventions showed a marginally significant increase of the records (Initial assessment-5; Final assessment-28) (p = 0.050).
DOI: 10.17632/g799t3s5s9.1
title: The first complete mitochondrial genome data of the pygmy rabbit Brachylagus idahoensis, the world’s smallest leporid

description: Mitogenome sequence is assembled using highthroughput sequencing data for Brachylagus idahoensis(UWBM82570). Genomic DNA was extracted with Qiagen DNeasy Blood & Tissue Kit (Valencia, CA). double-indexed and double-stranded library preparation; mitogenome enrichment with myBaits Custom 20-40K (Daicel Arbour Biosciences, USA); sequencing: Illumina NextSeq 550 platform; mitogenome assembled de novo in NOVOPlasty v.4.3.1 and annotated in MITOS2 web server. The circular mitogenome map was drawn using OGDRAW. Phylogenetic relationship was inferred using IQ-TREE.The mitogenome data are available in the GenBank under the accessionnumber OL436257(https://www.ncbi.nlm.nih.gov/nuccore/OL436257). Raw sequence data are available in Sequence Read Archive (BioProject:PRJNA839569, BioSample: SAMN28539370;http://www.ncbi.nlm.nih.gov/bioproject/839569)
DOI: 10.25919/8fb9-ff49
title: Parkes observations for project P1156 semester 2022APRS_04

description: The discovery of a repeating fast radio burst (FRB) 20200120E localized to a globular cluster (GC) of the nearby (~3.6 Mpc) M81 galaxy challenged our current understanding of FRBs. Its location in an old stellar system and proximity to the Earth (40 times closer than any other extragalactic FRB detected) have profound implications on the origin of FRBs and the number density and luminosity of this type of source. Motivated by this discovery, we propose to search for FRBs targeting at another nearby elliptical galaxy, Centaurus A. Its relative proximity (~3.5 Mpc), combined with its richness in GCs (&gt;1200), makes Centaurus A the best target in the sky for detecting new FRB sources in GCs. Such a targeted survey will allow us to constrain the event rate and luminosity of FRBs from GCs and hence understand their contribution to the cosmological FRB rate and shed new light on the formation of neutron stars in GCs.
DOI: 10.17632/grnz4krxp2.1
title: HHV-6A miR-aU14 and miR-30c alteration

description: Raw data for the manuscript showing HHV-6A encoded miR-aU14 mediated miR-30c regulation.
Manuscript title: Selective inhibition of microRNA processing by a herpesvirus-encoded microRNA governs virus reactivation from latency
Summary: Many viruses encode their own suite of miRNAs, which typically lack sequence homology to the miRNAs of their hosts. The molecular mechanisms and targets of virus-encoded miRNAs are incompletely understood. Here, we identify miRNA-mediated inhibition of miRNA processing as a general cellular mechanism that Human Herpesvirus 6A (HHV-6A) exploits to evade intrinsic host defense and drive the latent-lytic switch. We show that the most abundant HHV-6A miRNA (miR-aU14) selectively inhibits miRNA processing of miR-30 family members through direct RNA:RNA interaction. The subsequent loss of mature miR-30 results in a profound disruption of mitochondrial architecture via the miR-30/p53/Drp1 axis. This impairs type I interferon responses and promotes productive infection. Ectopic expression of miR-aU14 was sufficient and necessary to trigger virus reactivation from latency. Finally, we demonstrate that miRNA-mediated inhibition of miRNA processing represents a general mechanism in the cellular regulatory network that can be exploited to selectively target individual members of miRNA gene families.
DOI: 10.17632/d57xrfymgm.1
title: Processed Lipidomics data: Lung adenocarcinoma vs. normal lung tissue (human)

description: For lipidomic analyses, 22 normal lung tissues and 29 tumor tissues from adenocarcinoma patients undergoing lung resection were analyzed.  
Samples were processed as detailed in Hoppstädter et al. (2021,  DOI: https://doi.org/10.1016/j.ebiom.2021.103578). The analysis of lipids was performed by direct flow injection analysis (FIA) using a triple quadrupole mass spectrometer (FIA-MS/MS; QQQ triple quadrupole; Micromass Quattro Ultima, Waters) and a hybrid quadrupole-Orbitrap mass spectrometer (FIA-FTMS; high mass resolution; Qexactive Orbitrap, ThermoFisher Scientific). 
FIA-MS/MS (QQQ) was performed in positive ion mode using the analytical setup and strategy described previously (Liebisch et al., 2006, doi:10.1016/j.bbalip.2005.12.007; Liebisch et al., 2004, doi: 10.1016/j.bbalip.2004.09.003 ). The Fourier Transform Mass Spectrometry (FIA-FTMS) setup and data processing details are described in (Höring et al., 2019, doi:10.1021/acs.analchem.8b05013).
For PE, PE P, PS, PI, PG, LPC, LPE, SM, Cer, and HexCer, QQQ data were analyzed. For PC, PC O, DG, TG, FC, and CE, FTMS data were used.
DOI: 10.17632/mj36nhxm2n.1
title: Nemabiome of roe deer and sheep living in sympatry

description: The growth of livestock farming and the recent expansion of wild ungulate populations in Europe favor opportunities for direct and/or indirect cross-transmission of pathogens. Comparatively few studies have investigated the epidemiology of gastro-intestinal nematode parasites, an ubiquitous and important community of parasites of ungulates, at the wildlife/livestock interface. In this study, we aimed to assess the influence of livestock proximity on the gastrointestinal nematode community of roe deer in a rural landscape located in southern France. Using ITS-2 rDNA nemabiome metabarcoding on fecal larvae, we analyzed the gastrointestinal nematode communities of roe deer and sheep. In addition, we investigated Haemonchus contortus nad4 mtDNA diversity to specifically test parasite circulation among domestic and wild host populations. The dominant gastrointestinal nematode species found in both the roe deer and sheep were generalist species commonly found in small ruminant livestock (e.g. H. contortus), whereas the more specialized wild cervid nematode species (e.g. Ostertagia leptospicularis) were only present at low frequencies. This is in marked contrast with previous studies that found the nemabiome of wild cervid populations to be dominated by cervid specialist nematode species. In addition, the lack of genetic structure of the nad4 mtDNA of H. contortus populations between host species suggests circulation of gastrointestinal nematodes between roe deer and sheep. We observed a seasonal variation in the nemabiome composition of roe deer. The risk of contact with livestock has a small influence on the nemabiome of roe deer. The parasite population of roe deer has been displaced by generalist livestock parasites because of many decades of sheep farming, not only for deer grazing close to pastures, but also at a larger regional scale. Overall, our results demonstrate significant exchange of gastrointestinal nematodes between domestic and wild ungulates with generalist species spilling over from domestic ungulates dominating wild cervid parasite communities.
DOI: 10.17632/grnz4krxp2.2
title: HHV-6A miR-aU14 and miR-30c alteration

description: Raw data for the manuscript showing HHV-6A encoded miR-aU14 mediated miR-30c regulation.
Manuscript title: Selective inhibition of microRNA processing by a herpesvirus-encoded microRNA governs virus reactivation from latency
Summary: Many viruses encode their own suite of miRNAs, which typically lack sequence homology to the miRNAs of their hosts. The molecular mechanisms and targets of virus-encoded miRNAs are incompletely understood. Here, we identify miRNA-mediated inhibition of miRNA processing as a general cellular mechanism that Human Herpesvirus 6A (HHV-6A) exploits to evade intrinsic host defense and drive the latent-lytic switch. We show that the most abundant HHV-6A miRNA (miR-aU14) selectively inhibits miRNA processing of miR-30 family members through direct RNA:RNA interaction. The subsequent loss of mature miR-30 results in a profound disruption of mitochondrial architecture via the miR-30/p53/Drp1 axis. This impairs type I interferon responses and promotes productive infection. Ectopic expression of miR-aU14 was sufficient and necessary to trigger virus reactivation from latency. Finally, we demonstrate that miRNA-mediated inhibition of miRNA processing represents a general mechanism in the cellular regulatory network that can be exploited to selectively target individual members of miRNA gene families.
DOI: 10.5281/zenodo.4835886
title: A comprehensive phylogenomic study of the monocot order Commelinales, with a new classification of Commelinaceae

description: Premise Resolving relationships within order Commelinales has posed quite a challenge, as reflected in its unstable infra-familial classification. Thus, we investigated: (1) relationships across families and genera of Commelinales; (2) phylogenetic placement of never-before sequenced genera; (3) integration of plastome data from off-target reads with existing plastome datasets; and (4) how do the novel inferencescoincide with infra-familial classification Methods We generated two large datasets (nuclear and plastome) by means of target sequence capture using the Angiosperms353 probe set, with additional sequences mined from publicly available transcriptomes and full plastomes. A third extended-plastid dataset was considered, including all species with sequences in public repositories. Species trees were inferred under a multispecies coalescent framework from individual gene trees, and also usingmaximum likelihood analyzes from concatenated and partitioned data. Results The nuclear, plastome, and extended-plastid datasets include 52, 53, and 58 genera, respectively, and up to 290 species of Commelinales, representing the most comprehensive molecular sampling made for the order to date, which includes seven never-before sequenced genera. Conclusions We inferred robust phylogenies supporting the monophyly of Commelinales and its five constituent families, and we recovered a Pontederiaceae-Haemodoraceae and a Hanguanaceae-Commelinaceae, as previously reported. The placement of Philydraceae remains contentious. Relationships within the two largest families, Commelinaceae and Haemodoraceae, are resolved. Based on the latter results, we confirm the subfamilial classification of Haemodoraceae and propose a new classification for Commelinaceae, which includes synonymization of <em>Tapheocarpa </em>in <em>Commelina.</em>