cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/v9hx4vbb6m.1
title: Sedimentary mechanisms and high-resolution stratigraphy of Upper Pleistocene deposits of the eastern coast of Tunisia (Hergla escarpment)

description: - Concerning magentic susceptibility data: the analysis of magnetic susceptibility (MS) signal variations involved 43 samples from representative facies. Samples were packed into 10 cm3 cylindrical plastic (perspex) pots for MS analysis. The low-frequency magnetic susceptibility (MS) was measured by a Bartington MS2B probe at frequencies of 0.47 kHz. - the screen washings performed on marls showed that the fossil components were primarilycomposed of ostracods and benthic foraminifera. The micropaleontological determination of the different species using a Scanning Microscope. - Semi-quantitative analysis of allochems were performed on on 22 thin-sections that revealed various skeletal components. Results of bioclasts frequencies needed for the semi-quantitative analysis are summarized in the table below (Bioclast's frequencies data).
DOI: 10.17632/wg2wwrbwpp.1
title: A new approach

description: Tables and Figures from original manuscript “A New Approach to Thermo-Mechanical Treatment of Steel T91 by Multiple Upsetting-Extrusion in a ferritic range” by V.N. Voyevodin, M.A. Tikhonovsky, H.Yu. Rostova, A.S. Kalchenko, I.V. Kolodiy, N.F. Andrievskaya, V.S. Okovit, M. Serrano, R. Hernandez, O.M. Velikodnyi, A.V. Levenets.
DOI: 10.17632/kxb38h7snx.1
title: Horisawa-Takada et al., Meiosis-specific ZFP541 repressor complex promotes developmental progression of meiotic prophase towards completion during spermatogenesis

description: During spermatogenesis, meiosis is accompanied by robust alteration in gene expression and chromatin status. However, it remained elusive how meiotic transcriptional program is established to ensure completion of meiotic prophase. Here, we identified a novel protein complex that consists of germ-cell-specific zinc-finger protein ZFP541 and its interactor KCTD19 as the key transcriptional regulator for meiotic prophase progression. Our genetic study showed that ZFP541 and KCTD19 are co-expressed from pachytene onward and play an essential role in the completion of meiotic prophase program in the testis. Furthermore, our ChIP-seq and transcriptome analyses revealed that ZFP541 binds to and suppresses a broad range of genes whose function is associated with biological processes of transcriptional regulation and covalent chromatin modification. The present study demonstrates that germ-cell specific complex that contains ZFP541-KCTD19 promotes the progression of meiotic prophase towards completion in males, and triggers the reconstruction of the transcription network and chromatin organization leading to post-meiotic development.
DOI: 10.17632/3jbkffxzvm.2
title: Automatic End-to-End Testing Tools for Mobile Game Applications

description: In a thriving market of game development, innovation and speed of product development are vital. Despite condition of the market, quality assurance process of game development is still being done manually, which causes testing process is exposed to the limitation of manual testing. In this case, adopting automated testing can be done to try and solve the limitation of quality assurance on game development. The automated testing tool is expected to improve test process and discover whether there is a change compared to manual testing. Tool developed is tested into 3 different games that represent each popular genre of casual game on mobile game market. The results of this study show that not every game is able to be tested automatically. The main reasons are the scale of game and whether it requires an automated testing system. Game that was successfully tested automatically showed an improvement over manual testing on the time spent around 40.96%. Data included is: Test Script developed (written in JavaScript) and its AUT (in form of .apk) Developed Research Tool (written in JavaScript) Supporting research data, that includes summary of generated data and its visualization, flow of tool usage and its demonstration
DOI: 10.17632/82t9kkmx64.1
title: Language effect on transcoding_Vietnamese and French

description: Our study aimed to examine the language (base-10) effect on the transcoding performance and error nature in 68 French-speaking children and 173 Vietnamese-speaking children in the first grade. They were presented with two transcoding tasks: verbal- and analog-Arabic
DOI: 10.5281/zenodo.4651638
title: Supporting Information for "Utilizing Environmental Tracers to Reduce Groundwater Flow Transport Model Parameter Uncertainties"

description: Datasets for manuscript "Utilizing Environmental Tracers to Reduce Groundwater Flow Transport Model Parameter Uncertainties"
DOI: 10.17632/6rn5ybx5cj.1
title: Impact of membership for profit generation

description: Data collected from 10624 SACCOs
DOI: 10.17632/d7xw7s89hp.1
title: Tissue Extraction

description: Tissue Extraction Data
DOI: 10.17632/x96fbc9khj.1
title: Response to heterospecific calls in rallids

description: In this research I wanted to test whether water rail and little crake recognise each other's calls. Playback experiment was performed and each focal pair was subjected to four treatments: 1) a conspecific treatment, during which water rails received water rail calls (WR) and little crakes received little crake calls (LC); 2) a sympatric Rallidae treatment, during which water rails received calls of little crakes and vice versa; 3) a sympatric non-Rallidae treatment, during which water rails and little crakes were presented by calls of the little grebe (LG); and 4) a non-sympatric Rallidae treatment, during which water rails and little crakes received calls of the spotted crake (SC). Vocal and non-vocal response was measured. Description of call variants (water rail) and call types (little crake) can be found in Jedlikowski et al. 2021.
DOI: 10.17632/s9cg4b8n83.1
title: Experimental data: spar-buoy OWC wave energy converter for low-power applications

description: This dataset supplements the manuscript with the title “Unveiling the potential of using a spar-buoy oscillating-water-column wave energy converter for low-power stand-alone applications”, Applied Energy, doi:10.1016/j.apenergy.2021.116835 The dataset includes the irregular-wave time-series that allows the reproduction of the results presented in Figs. 15, 16, 17, and 18, using a larger orifice plate (OS3). The data may be used for result reproduction, numerical modelling validation, and control purposes. We present all data at model-scale, which was 1:10th, using Froude scaling criterion. You may find data for two significant wave heights Hs [m], and for several energy periods Te [s]. Each excel file includes the time-series of the following: • the pressure difference (tab 1, column B), • the relative motion between the buoy and the oscillating-water-column (OWC) (tab 1, column C), • the free-surface-elevation as it was recorded by the wave gauge next to the buoy (tab 1, column D), • the motions in six degrees-of-freedom (tab 2). The calibrations have already been applied to the data, and all time-series have been filtered. Below you can find the number and main characteristics (sea-states) for each excel file (the significant wave height Hs [m] (rounded value) and the energy period Te [s], at model scale): Test (65): Hs = 0.1 m, Te = 1.76 s Test (66): Hs = 0.1 m, Te = 1.80 s Test (67): Hs = 0.1 m, Te = 2.02 s Test (68): Hs = 0.1 m, Te = 2.50 s Test (69): Hs = 0.1 m, Te = 3.23 s Test (70): Hs = 0.1 m, Te = 3.58 s Test (71): Hs = 0.1 m, Te = 4.88 s Test (73): Hs = 0.2 m, Te = 2.30 s Test (74): Hs = 0.2 m, Te = 2.67 s Test (75): Hs = 0.2 m, Te = 3.19 s Test (76): Hs = 0.2 m, Te = 5.02 s
DOI: 10.17632/9h6t26dzwf.1
title: Iron isotopic composition of suspended particulate matter in the Mun River

description: This dataset presents analyses of iron isotopic composition relative to IRMM-014 from suspended particulate matter in the Mun River（northeast Thailand）during dry march 2018.
DOI: 10.17632/z7g2vkdfvm.1
title: A multiagent framework to model the interactions of local energy communities and power systems

description: This dataset is required to reproduce the model presented in the paper entitled "A multiagent framework to model the interactions of local energy communities and power systems" submitted to the 4th International Conference on Smart Energy Systems and Technologies (SEST), 6-8 September 2021, Vaasa, Finland.
DOI: 10.17632/c2fdk3mhys.1
title: Breast_cancer_Cali

description: Data from quality life questionnaries: QLQ-C30 and QLQ-BR23 in a cohort of Women with breast cancer in Cali, Colombia - 2020.
DOI: 10.17632/3nw4bztjns.1
title: NAR - Marker-free Quantification of Repair Pathway Utilization at Cas9-induced Double-Strand Breaks

description: Genome integrity and genome engineering require efficient repair of DNA double-strand breaks (DSBs) by non-homologous end joining (NHEJ), homologous recombination (HR), or alternative end-joining pathways. Here we describe two complementary methods for marker-free quantification of DSB repair pathway utilization at Cas9-targeted chromosomal DSBs in mammalian cells. The first assay features the analysis of amplicon next-generation sequencing data using ScarMapper, an iterative break-associated alignment algorithm to classify individual repair products based on deletion size, microhomology usage, and insertions. The second assay uses repair pathway-specific droplet digital PCR assays (“PathSig-dPCR”) for absolute quantification of signature DSB repair outcomes. We show that ScarMapper and PathSig-dPCR enable comprehensive assessment of repair pathway utilization in different cell models, after a variety of experimental perturbations. We use these assays to measure the differential impact of DNA end resection on NHEJ, HR, and polymerase theta-mediated end joining (TMEJ) repair. These approaches are adaptable to any cellular model system and genomic locus where Cas9-mediated targeting is feasible. Thus, ScarMapper and PathSig-dPCR allow for systematic fate mapping of a targeted DSB with facile and accurate quantification of DSB repair pathway choice at endogenous chromosomal loci.
DOI: 10.17632/tskgmdsgjw.1
title: A Quantitative Evaluation Method on the Anisotropic Wave Velocity Field of Jointed Rockmass

description: It includes the data used in this study.
DOI: 10.17632/7djsbz6prv.1
title: The relation between physical and mental load, and the course of physiological functions and cognitive performance

description: The data relate to a manuscript that will be published inTheoretical Issues in Ergonomics Science. Taylor & Francis. Description of variables and research design: ID=the numerical identification of examined person (EP) age=19-27 pad_chair: pad=2; chair=1 gender: man=2; female=1 BoCmin=correctly cancelled symbols of Bo test/min or BoC1min...BoC20min BoCSUMmin=sum of correctly cancelled symbols of Bo test from all 20 minutes BoCMEANmin=mean of correctly cancelled symbols of Bo test from all 20 minutes BoEmin=incorrectly cancelled symbols (errors) of Bo test/min or BoE1min...BoE20min BoESUMmin=sum of incorrectly cancelled symbols (errors) of Bo test from all 20 minutes BoEMEANmin=mean of incorrectly cancelled symbols (errors) of Bo test from all 20 minutes VTA=absolute tidal volume change. VTA was subsequently calculated and expressed in liters. 0.5 l is the initial mean value. VTR=relative tidal volume change MV=minute ventilation TEMP=body temperature SCL=skin conductance level HRVSampEn=Heart rate variability sample entropy Pulse_frequency=heart rate (HR) Resp_frequency=respiratory rate (RR) HFLF_welch=low frequency to high frequency ratio, computed by Welch phase_exp=1-4 1: The control phase of the measurement lasted 2 minutes. In this phase, all EPs sat on chairs with no pads. Its purpose was to analyze the initial values of the EPs’ physiological functions. These values were supposed to be identical or very similar in the experimental group and the control group. Minutes 0,1. 2: The following rest phase of the measurement lasted 20 minutes. Control-group EPs continued sitting on chairs without pads, while EPs in the other group were seated on pads that had been added to their chairs. They would then sit on these pads until the end of the fourth phase, the final step in the experiment. During the second phase, EPs were not to show any deliberate cognitive activity. Activities involving inadvertent attention, however, were allowed, for example, looking forward at the table or out of the window. Minutes 2...21. 3: The load phase lasted 20 minutes, during which the EPs continuously filled out of the Bo test (Bourdon test T-78: the test of sustained, selected attention). Minutes 22...41. 4: The verification phase lasted 2 minutes. Following the end of the cognitive load, this phase also served to compare the development of physiological functions in the two groups of EPs in connection with the use of the pad, particularly with respect to exploring the rate of EPs’ adaptation after performance (load). Minutes 42,43.
DOI: 10.17632/mp3hy7n8zm.1
title: How do people in low-resource settings define health and what do they want from their healthcare?_Interviewtranscripts

description: This data set consists of transcribed in depth interviews and focus groups conducted in villages and slums in and around Bangalore to address the research question: 'How do people in low-resource settings define health and what do they want from their healthcare?'. Data was analysed using thematic analysis, and the results are as follows. Participants defined health in three ways: (1)Absence of health problems (2)Ability to work (3) Result of a good lifestyle. Five major factors were considered essential requirements for healthcare institutions (1) Good Doctor (2) To get well quickly (3) Affordable costs (4) Cleanliness (5)Emergency services and diagnostic facilities (6) I don’t go to the hospital. The study also identified prevalent stigma in villages against seeking healthcare. The results are consistent with previous studies. Participants said that a good rapport with the doctor is of greatest importance. People’s expectations should be met in order to provide healthcare that satisfies the definition of ‘quality’ for both healthcare providers and seekers. The results can be used to direct further research and design tailor made interventions specific to the people in these areas.
DOI: 10.17632/xxrsf4nr7v.3
title: Spatial and latent memory data in PS2Tg2576 Alzheimer’s disease mouse model after memantine treatment

description: We present data on whether memantine, an adamantane derivative and medical NMDA-receptor antagonist, improves spatial and latent learning deficits in amyloid precursor protein/presenilin 2 double-transgenic mice (PS2Tg2576 mice). PS2Tg2576 mice were subjected to Morris water maze (MWM) test for spatial memory and the water-finding test for latent memory testing at ages 3 and 5-6 months. At 3 months of age, the learning performance of PS2Tg2576 mice was normal compared to wild-type mice in both tasks. At 5-6 months of age, cognitive deficits were observed in the MWM and water-finding test; 3-4 weeks of memantine treatment (30 mg/kg/day, p.o.) significantly reverted the learning deficits in the MWM; however, had little effect on those in the water-finding test. The information provided in this report adds to the literature and can be used for the selection of animal models and behavioral paradigms for Alzheimer's disease (AD) research.
DOI: 10.17632/wpwy2m8ffb.2
title: visual tracking & pointing movements

description: Multiple object tracking (MOT) and goal-directed movements are both based on attentional processes. This study focused on the instant effect of attentive tracking with respect to pointing performance. We measured the precision of pointing to the targets of an MOT task immediately after the tracking period when all the objects were still in motion, and to the precision of pointing to moving objects in the task without attentional tracking. The results demonstrated that an increase in the attentional tracking load was the primary factor that decreased pointing precision, although visual load may also contribute to this influence. We also manipulated the relationship between the number of targets and the density of the MOT display (the total number of objects displayed), which affected the MOT accuracy but not the pointing precision.
DOI: 10.5281/zenodo.4651672
title: PD1 signaling network, discovery dataset 1

description: Cytoscape file to reproduce the network representation of differential gene regulation in the PD1 signaling pathway in discovery dataset 1, as described in our manuscript "Regulation of PD1 signaling is associated with prognosis in glioblastoma multiforme." Node size corresponds to the number of edges connected in the graph; line-width of edges corresponds to their signi cance in di erential regulation. Gene targeting scores (or "degrees") are shown with a circle surrounding the node. Red: higher expression/targeting in short-term survivors,<br> blue: higher expression/targeting in the long-term survivors.
description: This work was supported by grants from the US National Heart, Lung, and Blood Institute of the National Institutes of Health (R01HL111759, P01HL105339, K25HL133599, R35CA220523), from the Charles A. King Trust Postdoctoral Research Fellowship Program, Sara Elizabeth O'Brien Trust, Bank of America, N.A., Co-Trustees, and from the Norwegian Research Council, Helse Sør-Øst, and University of Oslo through the Centre for Molecular Medicine Norway (NCMM).
description: {"references": ["Lopes-Ramos et al. (2021) BioRxiv, doi: https://doi.org/10.1101/2021.02.11.430786"]}
DOI: 10.5281/zenodo.4651671
title: PD1 signaling network, discovery dataset 1

description: Cytoscape file to reproduce the network representation of differential gene regulation in the PD1 signaling pathway in discovery dataset 1, as described in our manuscript "Regulation of PD1 signaling is associated with prognosis in glioblastoma multiforme." Node size corresponds to the number of edges connected in the graph; line-width of edges corresponds to their signi cance in di erential regulation. Gene targeting scores (or "degrees") are shown with a circle surrounding the node. Red: higher expression/targeting in short-term survivors,<br> blue: higher expression/targeting in the long-term survivors.
description: This work was supported by grants from the US National Heart, Lung, and Blood Institute of the National Institutes of Health (R01HL111759, P01HL105339, K25HL133599, R35CA220523), from the Charles A. King Trust Postdoctoral Research Fellowship Program, Sara Elizabeth O'Brien Trust, Bank of America, N.A., Co-Trustees, and from the Norwegian Research Council, Helse Sør-Øst, and University of Oslo through the Centre for Molecular Medicine Norway (NCMM).
description: {"references": ["Lopes-Ramos et al. (2021) BioRxiv, doi: https://doi.org/10.1101/2021.02.11.430786"]}
DOI: 10.6084/m9.figshare.14340332
title: SC - Search strategy table miRNAs & T2D.xlsx

description: Data relating to a systematic review investigating the role of miRNAs in ageing, disease, inactivity/activity.Articles were suitable based on adherence to a strict inclusion and exclusion criteria (Research articles published in last 5 years, studies in english, human participants over the age of 19).P.I.C.O was employed.
DOI: 10.6084/m9.figshare.14340332.v1
title: SC - Search strategy table miRNAs & T2D.xlsx

description: Data relating to a systematic review investigating the role of miRNAs in ageing, disease, inactivity/activity.Articles were suitable based on adherence to a strict inclusion and exclusion criteria (Research articles published in last 5 years, studies in english, human participants over the age of 19).P.I.C.O was employed.
DOI: 10.15468/c43fp3
title: A new subspecies of giant sengi (Macroscelidea: Rhynchocyon) from coastal Kenya

description: This dataset contains the digitized treatments in Plazi based on the original journal article Agwanda, Bernard R., Rosero, Francesco, Lawson, Lucinda P., Sernesi, Cristiano, Amin, Rajan (2021): A new subspecies of giant sengi (Macroscelidea: Rhynchocyon) from coastal Kenya. Zootaxa 4948 (2): 245-260, DOI: https://doi.org/10.11646/zootaxa.4948.2.5
DOI: 10.6084/m9.figshare.14346929
title: Supporting_Information.zip

description: Supplementary data for the article "Proposition of a new allosteric binding site for potential SARS-CoV-2 3CL protease inhibitors by utilizing molecular dynamics simulations and ensemble docking". The data contains:1. List of all molecules and their identifiers<br>2. Molecules removed from the database<br>3. Docking energies of all ligands to the binding site (1st round)<br>4. Docking energies to the five conformations of all ligands that passed the first round<br>5. SMILES notation for the 10 best ligands<br>6. Results of the active site docking for the top 10 ligands<br>7. Results of the blind docking for the top 10 ligands<br>8. MD results for the top 10 ligands bound to conformations 1 and 2 (conformations every 30 ns, backbone RMSD, per-residue decomposition of the binding constant)<br>9. Additional tables and figures<br>
DOI: 10.6084/m9.figshare.14346929.v1
title: Supporting_Information.zip

description: Supplementary data for the article "Proposition of a new allosteric binding site for potential SARS-CoV-2 3CL protease inhibitors by utilizing molecular dynamics simulations and ensemble docking". The data contains:1. List of all molecules and their identifiers<br>2. Molecules removed from the database<br>3. Docking energies of all ligands to the binding site (1st round)<br>4. Docking energies to the five conformations of all ligands that passed the first round<br>5. SMILES notation for the 10 best ligands<br>6. Results of the active site docking for the top 10 ligands<br>7. Results of the blind docking for the top 10 ligands<br>8. MD results for the top 10 ligands bound to conformations 1 and 2 (conformations every 30 ns, backbone RMSD, per-residue decomposition of the binding constant)<br>9. Additional tables and figures<br>
DOI: 10.5281/zenodo.4651686
title: KopfLab/2021_halamka_et_al: data and supplementary source code

description: Data and supplementary source code for Halamka et al (2021).
description: Supported by the National Science Foundation (USA), EAR #1945484.
DOI: 10.5281/zenodo.4651685
title: KopfLab/2021_halamka_et_al: data and supplementary source code

description: Data and supplementary source code for Halamka et al (2021).
description: Supported by the National Science Foundation (USA), EAR #1945484.
DOI: 10.15784/601365
title: Resampling of Deep Polar Ice Cores using Information Theory

description: The original water stable isotope data for the WAIS Divide Deep Ice Core was generated under the University of Colorado INSTAAR Stable Isotope Lab (NSF Award# 1443328). This data set contains high-resolution dD and d18O data for the West Antarctic Ice Sheet (WAIS) Divide Ice core. Drilling was initiated in 2006 and completed in 2011, and subsequent analyses on the ice were performed at the University of Colorado INSTAAR Stable Isotope Lab using Continuous Flow Analysis (CFA), completed in 2015 and described in Jones et al. (2017). The targeted resampling of the WAIS Divide Ice core (1035.4 to 1368.2 m) was completed in 2019 (NSF OPP - Antarctic Glaciology 1807522) to replace data analyzed on an older generation Laser Absorption Spectroscopy instrument. The resampling interval was identified using information theory (Garland and Jones et al. 2018).