cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/pcra-c14-247786
title: National youth congress, COGIC (17th: 1952), program

description: [description english/roman)] Program book "yearbook" for the 17th National youth congress, Church of God in Christ, Philadelphia, Pennsylvania, 1952 June 26 - July 1. This xerographic exemplar lacks page 12.
DOI: 10.15468/dl.swz8jv
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pinarocorys erythropygia (Strickland, 1852))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 123 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298886-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8s9fu9
title: Occurrence Download

description: A dataset containing 807 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1970-2000",
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Triticum boeoticum Boiss.",
 "TaxonKey is Triticum dicoccoides (Körnicke) G.Schweinfurth",
 "TaxonKey is Eleusine africana Kenn.-O'Byrne"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 807 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013415-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-248157
title: Royalty unveiled, 2011

description: [description english/roman)] Glenda Williams Goodson. Royalty unveiled: women trailblazers in Church of God in Christ international missions, 1920-1970. Lancaster, Texas: HCM Publishing, 2011.
DOI: 10.15468/dl.kgd42s
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters is less than or equal to 2000.0",
 "Country is Greece",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Podisma pedestris (Linnaeus, 1758)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218563-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4y7gg
title: Occurrence Download

description: A dataset containing 544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Portulaca oleracea L."
 ]
}

 The dataset includes 544 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298881-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-248108
title: Royalty unveiled, 2011

description: [description english/roman)] Glenda Williams Goodson. Royalty unveiled: women trailblazers in Church of God in Christ international missions, 1920-1970. Lancaster, Texas: HCM Publishing, 2011.
DOI: 10.15468/dl.3kr38j
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phidiana lottini (Lesson, 1831)"
 ]
}

 The dataset includes 48 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095444-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j97z9b
title: Occurrence Download

description: A dataset containing 3818 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Continent is North America",
 "Continent is South America"
 ]
 },
 "TaxonKey is Parkia R.Br."
 ]
}

 The dataset includes 3818 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013417-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-248110
title: Royalty unveiled, 2011

description: [description english/roman)] Glenda Williams Goodson. Royalty unveiled: women trailblazers in Church of God in Christ international missions, 1920-1970. Lancaster, Texas: HCM Publishing, 2011.
DOI: 10.15468/dl.umwpn7
title: Occurrence Download

description: A dataset containing 2890 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pinarocorys nigricans (Sundevall, 1850))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2890 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298889-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5epe5c
title: Occurrence Download

description: A dataset containing 31275 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Seabird Atlas of South-eastern Australian Waters 1975-1993"
 ]
}

 The dataset includes 31275 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004502-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5yesn
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phestilla melanobrachia Bergh, 1874"
 ]
}

 The dataset includes 136 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095437-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-248196
title: Royalty unveiled, 2011

description: [description english/roman)] Glenda Williams Goodson. Royalty unveiled: women trailblazers in Church of God in Christ international missions, 1920-1970. Lancaster, Texas: HCM Publishing, 2011.
DOI: 10.15468/dl.qj8ymx
title: Occurrence Download

description: A dataset containing 162984 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Trochilidae",
 "Year 1990-2016"
 ]
}

 The dataset includes 162984 records from 179 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025433-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6b1fbg
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Hydrobia knysnaensis (Krauss, 1848)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004502-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-248013
title: I’m so glad I’m sanctified, 2005

description: [description english/roman)] Glenda Williams Goodson. I'm so glad I'm sanctified!: wisdom, quotes and treasures from Church of God in Christ pioneering women, 1911-1975. Lancaster, Texas: HCM Publishing, 2005.
DOI: 10.15468/dl.vzkgtf
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba funiculosa Hook.f."
 ]
}

 The dataset includes 89 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050660-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-248060
title: I’m so glad I’m sanctified, 2005

description: [description english/roman)] Glenda Williams Goodson. I'm so glad I'm sanctified!: wisdom, quotes and treasures from Church of God in Christ pioneering women, 1911-1975. Lancaster, Texas: HCM Publishing, 2005.
DOI: 10.15468/dl.54g8w7
title: Occurrence Download

description: A dataset containing 7001653 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Dipsacales, Dioscoreales)"
 ]
}

 The dataset includes 7001653 records from 5066 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016938-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13944092
title: PROFESSIONAL COMPETENCE DEVELOPMENT TENDENCIES IN FUTURE EDUCATORS
DOI: 10.5281/zenodo.13944093
title: PROFESSIONAL COMPETENCE DEVELOPMENT TENDENCIES IN FUTURE EDUCATORS
DOI: 10.5281/zenodo.11942464
title: Data for the internship at the MPI

description: Data for the internship at the MPI

Repositories

Code



protein-structure-analysis -- A snakemake pipeline that allows for  comparison of protein complexes using the USalign algorithm,  invesitgation of ligands using PLIP, plotting of a ramachandran profile, enumerating steric clashes, analysis of surface accessibility and plotting of the beta-factor column.

snakemake-template -- Tempate for snakemake that I used throughout my internship. In this repo, aliases are set for the shell, and frequently used dependencies are installed.

NeuralPlexer -- A snakemake pipeline  that uses Neuralplexer to predict Protein ligand interactions.

snakemake-tutorial -- A repository that contains an example pipeline  for DNA read mapping between two sample types. Made for the Snakemake seminar.

distance-map -- A python script that analyses possible contacts between subunits of a protein complex and output contacts maps for each interface, and a subunit interaction graph.

LLPS-prediction -- A snakemake pipeline to annotate uniprot proteomes with scores from the PSPhunter and Seq2Phase tools.

LLPS-analysis -- A snakemake pipeline that analyses the performance of recently published LLPS prediction tools.

complex-prediction -- A snakemake pipeline to predict protein protein complexes using the Combfold algorithm.

yeast-computational-pi-screen -- Analysis of Humphreys et al 2021


Presentations and talks



Snakemake seminar -- My presentation to introduce snakemake to the AG Walther department . Repo hosted here.

Final presentation -- Presentation of my findings. Repo hosted here


 

Description of the dataset

.
├── data
│   ├── main
│   │   ├── cluster-channeling
│   │   │   ├── store.ttl
│   │   │   ├── UP000005640
│   │   │   └── UP000006548
│   │   └── contact-channeling
│   │       ├── 2024-06-02-combfold-glycolysis
│   │       ├── 2024-06-10-combfold-glycolysis
│   │       ├── 2024-06-13-alpha-fold-glycolysis
│   │       ├── enolase-neural-plexer
│   │       ├── fold_2024_06_21_14_11_enolase
│   │       └── tca-cycle-metabolon
│   └── side
│       ├── folding-actin
│       │   └── 2024-06-04
│       ├── folding-IMDPH1
│       │   └── 2024-06-01
│       └── hd-zip
├── LICENSE
├── pixi.lock
├── pixi.toml
├── README.md
├── resources
│   └── rcsb
│       ├── 5TD9.pdb
│       └── download
├── results
│   └── metabolon-prediction
│       └── tm-scores
│           ├── af2_enolase
│           └── af3_enolase
└── workflow
    ├── envs
    │   └── structure-comparison.yml
    ├── help.sh
    ├── help.txt
    ├── scripts
    │   └── convert-cif-to-pdb.py
    └── Snakefile
DOI: 10.15468/dl.bbgxag
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atractylodes macrocephala Koidz."
 ]
}

 The dataset includes 267 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019613-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25040951.v1
title: <b>Spatiotemporal Integration of Contextual and Sensory Information within the Cortical Hierarchy in Human Pain Experience</b>

description: <b>Spatiotemporal Integration of Contextual and Sensory Information within the Cortical Hierarchy in Human Pain Experience</b>This repository has two folders. Each folder has scripts for 1) analysis and visualization and 2) experiments. See `README.md` in each folder for more details.<b>Requirements</b>You need these toolboxes for analyses and visualizationcocoanCORE (https://github.com/cocoanlab/cocoanCORE)CanlabCore (https://github.com/canlab/CanlabCore)MediationToolbox (https://github.com/canlab/MediationToolbox)SPM12 (https://www.fil.ion.ucl.ac.uk/spm/software/spm12/)GIFT Toolbox (https://trendscenter.org/software/gift/)BrainSpaceToolbox (https://brainspace.readthedocs.io/en/latest/)and for experimentsPsychtoolbox-3 (http://psychtoolbox.org)<b>Written by Suhwan Gim (suhwan.gim.psych@gmail.com</b>)
DOI: 10.15468/dl.jht6c9
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Turrutus socialis (Flor, 1861)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 112 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019614-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11820598
title: Wind turbine condition monitoring dataset of Fraunhofer LBF

description: Fraunhofer wind turbine dataset  contains monitoring data from a 750 W wind turbine (WT), including accelerometers and tachometer, to capture structural response, bearing vibrations and rotational velocity. Additionally, temperatures of the structure, wind speed and wind direction have been measured, while weather conditions have been acquired from selected sources. Various damage scenarios, including mass imbalance, and aerodynamic imbalance as well as damages on bearings’ outer race, inner race and roller element have been implemented. The availability of time series data makes the dataset well suited for both machine learning and signal processing-based condition monitoring (CM) applications. The availability of heterogeneous sensors has created a dataset particularly suited for information fusion, data fusion, multi-sensor approaches, and holistic monitoring. Experiments were conducted in real-world conditions outside of a controlled laboratory environment, thereby introducing challenges such as variable rotor speed, noise, overloads, and other environmental factors. Consequently, the dataset is qualified for tasks involving uncertainty quantification and signal pre-processing. This document will detail the test equipment, experimental procedures, simulated damage cases, measurement parameters, data specifics, and preliminary analysis aimed at validating data quality.

See the full data descriptor at: https://doi.org/10.1038/s41597-024-03934-5
DOI: 10.5281/zenodo.11820597
title: Wind turbine condition monitoring dataset of Fraunhofer LBF

description: Fraunhofer wind turbine dataset  contains monitoring data from a 750 W wind turbine (WT), including accelerometers and tachometer, to capture structural response, bearing vibrations and rotational velocity. Additionally, temperatures of the structure, wind speed and wind direction have been measured, while weather conditions have been acquired from selected sources. Various damage scenarios, including mass imbalance, and aerodynamic imbalance as well as damages on bearings’ outer race, inner race and roller element have been implemented. The availability of time series data makes the dataset well suited for both machine learning and signal processing-based condition monitoring (CM) applications. The availability of heterogeneous sensors has created a dataset particularly suited for information fusion, data fusion, multi-sensor approaches, and holistic monitoring. Experiments were conducted in real-world conditions outside of a controlled laboratory environment, thereby introducing challenges such as variable rotor speed, noise, overloads, and other environmental factors. Consequently, the dataset is qualified for tasks involving uncertainty quantification and signal pre-processing. This document will detail the test equipment, experimental procedures, simulated damage cases, measurement parameters, data specifics, and preliminary analysis aimed at validating data quality.

See the full data descriptor at: https://doi.org/10.1038/s41597-024-03934-5
DOI: 10.15468/dl.ktw9mt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ulopa trivia Germar, 1821",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019615-241007104925546/datasets/export for details.
DOI: 10.6084/m9.figshare.27176202
title: STRO 2.0 - Re-engineered data from Sound Toll Registers Online

description: This dataset contains the restructured and refactored data from Sound Toll Registers Online. The datamodel of STRO 2.0 is described in a paper submitted to the 2025 Digital Humanities in the Nordic and Baltic Countries Conference. The process is documented on a dedicated GitHub page: https://github.com/dhofu/stro20.<br>
DOI: 10.14272/sanirtqdabnchf-uhfffaoysa-n/chmo0000595
title: 13C nuclear magnetic resonance spectroscopy (13C NMR) (7-(diethylamino)-3-[7-(diethylamino)-2-oxochromene-3-carbonyl]chromen-2-one)
title: InChI=1S/C27H28N2O5/c1-5-28(6-2)19-11-9-17-13-21(26(31)33-23(17)15-19)25(30)22-14-18-10-12-20(29(7-3)8-4)16-24(18)34-27(22)32/h9-16H,5-8H2,1-4H3

description: dataset for 13C nuclear magnetic resonance spectroscopy (13C NMR)
DOI: 10.14272/sanirtqdabnchf-uhfffaoysa-n/chmo0000601
title: heteronuclear multiple bond coherence (HMBC) (7-(diethylamino)-3-[7-(diethylamino)-2-oxochromene-3-carbonyl]chromen-2-one)
title: InChI=1S/C27H28N2O5/c1-5-28(6-2)19-11-9-17-13-21(26(31)33-23(17)15-19)25(30)22-14-18-10-12-20(29(7-3)8-4)16-24(18)34-27(22)32/h9-16H,5-8H2,1-4H3

description: dataset for heteronuclear multiple bond coherence (HMBC)
DOI: 10.14272/sanirtqdabnchf-uhfffaoysa-n/chmo0000593
title: 1H nuclear magnetic resonance spectroscopy (1H NMR) (7-(diethylamino)-3-[7-(diethylamino)-2-oxochromene-3-carbonyl]chromen-2-one)
title: InChI=1S/C27H28N2O5/c1-5-28(6-2)19-11-9-17-13-21(26(31)33-23(17)15-19)25(30)22-14-18-10-12-20(29(7-3)8-4)16-24(18)34-27(22)32/h9-16H,5-8H2,1-4H3

description: dataset for 1H nuclear magnetic resonance spectroscopy (1H NMR)
DOI: 10.14272/sanirtqdabnchf-uhfffaoysa-n/chmo0000596
title: distortionless enhancement with polarization transfer (DEPT) (7-(diethylamino)-3-[7-(diethylamino)-2-oxochromene-3-carbonyl]chromen-2-one)
title: InChI=1S/C27H28N2O5/c1-5-28(6-2)19-11-9-17-13-21(26(31)33-23(17)15-19)25(30)22-14-18-10-12-20(29(7-3)8-4)16-24(18)34-27(22)32/h9-16H,5-8H2,1-4H3

description: dataset for distortionless enhancement with polarization transfer (DEPT)
DOI: 10.14272/sanirtqdabnchf-uhfffaoysa-n/chmo0000599
title: correlation spectroscopy (COSY) (7-(diethylamino)-3-[7-(diethylamino)-2-oxochromene-3-carbonyl]chromen-2-one)
title: InChI=1S/C27H28N2O5/c1-5-28(6-2)19-11-9-17-13-21(26(31)33-23(17)15-19)25(30)22-14-18-10-12-20(29(7-3)8-4)16-24(18)34-27(22)32/h9-16H,5-8H2,1-4H3

description: dataset for correlation spectroscopy (COSY)
DOI: 10.14272/sanirtqdabnchf-uhfffaoysa-n/chmo0000596.1
title: distortionless enhancement with polarization transfer (DEPT) (7-(diethylamino)-3-[7-(diethylamino)-2-oxochromene-3-carbonyl]chromen-2-one)
title: InChI=1S/C27H28N2O5/c1-5-28(6-2)19-11-9-17-13-21(26(31)33-23(17)15-19)25(30)22-14-18-10-12-20(29(7-3)8-4)16-24(18)34-27(22)32/h9-16H,5-8H2,1-4H3

description: dataset for distortionless enhancement with polarization transfer (DEPT)
DOI: 10.14272/sanirtqdabnchf-uhfffaoysa-n/chmo0000604
title: heteronuclear single quantum coherence (HSQC) (7-(diethylamino)-3-[7-(diethylamino)-2-oxochromene-3-carbonyl]chromen-2-one)
title: InChI=1S/C27H28N2O5/c1-5-28(6-2)19-11-9-17-13-21(26(31)33-23(17)15-19)25(30)22-14-18-10-12-20(29(7-3)8-4)16-24(18)34-27(22)32/h9-16H,5-8H2,1-4H3

description: dataset for heteronuclear single quantum coherence (HSQC)
DOI: 10.14272/sanirtqdabnchf-uhfffaoysa-n/chmo0000630
title: infrared absorption spectroscopy (IR) (7-(diethylamino)-3-[7-(diethylamino)-2-oxochromene-3-carbonyl]chromen-2-one)
title: InChI=1S/C27H28N2O5/c1-5-28(6-2)19-11-9-17-13-21(26(31)33-23(17)15-19)25(30)22-14-18-10-12-20(29(7-3)8-4)16-24(18)34-27(22)32/h9-16H,5-8H2,1-4H3

description: dataset for infrared absorption spectroscopy (IR)