cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12017049.v5
title: Supplementary Table 1

description: <b>Supplementary Table 1. Detailed clinical information of subjects.</b><b><br></b><b>Supplementary Table 2. Cluster of genes in hierarchical clustering analysis.</b><b>Supplementary Table 3. Genes with adjusted p-value less than 0.05 compared with healthy controls.</b><b>Supplementary Table 4. Differentially upregulated genes in comparison between diffuse cutaneous systemic sclerosis and healthy controls.</b><b>Supplementary Table 5. Differentially downregulated genes in comparison between diffuse cutaneous systemic sclerosis and healthy controls.</b>ACA, anti-centromere antibody; ATA, anti-topoisomerase antibody; RNAP, anti-RNA polymerase 3 antibody; RNP, anti-U1RNP antibody.
DOI: 10.6084/m9.figshare.12017049.v4
title: Supplementary Table 1

description: <b>Supplementary Table 1. Cluster of genes in hierarchical clustering analysis.</b><b>Supplementary Table 2. Genes with adjusted p-value less than 0.05 compared with healthy controls.</b><b>Supplementary Table 3. Detailed clinical information of subjects.</b><b>Supplementary Table 4. Differentially upregulated genes in comparison between diffuse cutaneous systemic sclerosis and healthy controls.</b><b>Supplementary Table 5. Differentially downregulated genes in comparison between diffuse cutaneous systemic sclerosis and healthy controls.</b>ACA, anti-centromere antibody; ATA, anti-topoisomerase antibody; RNAP, anti-RNA polymerase 3 antibody; RNP, anti-U1RNP antibody.
DOI: 10.6084/m9.figshare.12016989.v1
title: counts

description: <b>tblASVcounts_human_filter.csv: A melted table containing</b><b>the sequence counts of each ASV detected in 12,546 stool samples</b> SampleID: stool sample identifier ASV: identifier of the ASVs Count: number of reads<br> <b>tblqpcr.csv: 16S rRNA qPCR data for 3,358 stool samples</b> SampleID: stool sample identifier qPCR16S: 16S copies per gram of stool sample
DOI: 10.6084/m9.figshare.12016989.v2
title: counts

description: <b>tblASVcounts_human_filter.csv: A melted table containing</b><b>the sequence counts of each ASV detected in 12,546 stool samples</b> SampleID: stool sample identifier ASV: identifier of the ASVs Count: number of reads<br> <b>tblqpcr.csv: 16S rRNA qPCR data for 3,358 stool samples</b> SampleID: stool sample identifier qPCR16S: 16S copies per gram of stool sample
DOI: 10.6084/m9.figshare.12016968
title: Cancer cell lines raw data

description: Cancer cell lines annotation and omics data downloaded from CCLE database.
DOI: 10.6084/m9.figshare.12016983.v1
title: samples

description: <b>tblASVsamples.csv: The day of collection of 12,659 stool samples for 1,879 patients and the stool consistency</b>SampleID: stool sample identifierPatientID: deidentified identifier of a patientDay: deidentified day of sample collectionConsistency: stool consistencyAccession: the NCBI SRA accession number for the sequencing data corresponding to this sample
DOI: 10.6084/m9.figshare.12016968.v1
title: Cell_lines_annotations_20181226.txt

description: Cancer cell lines information downloaded from CCLE database.
DOI: 10.6084/m9.figshare.12016983.v2
title: samples

description: <b>tblASVsamples.csv: The day of collection of 12,659 stool microbiome samples for 1,870 patients and the stool consistency</b>SampleID: stool sample identifierPatientID: deidentified identifier of a patientTimepoint: deidentified day of sample collectionConsistency: stool consistencyAccession: the NCBI SRA accession number for the sequencing data corresponding to this sampleDayRelativeToNearestTransplantDay: day of sample collection relative to nearest day of bone marrow transplant<br>
DOI: 10.6084/m9.figshare.12016983.v3
title: samples

description: <b>tblASVsamples.csv: The day of collection of 12,659 stool microbiome samples for 1,870 patients and the stool consistency</b>SampleID: stool sample identifierPatientID: deidentified identifier of a patientTimepoint: deidentified day of sample collectionConsistency: stool consistencyAccession: the NCBI SRA accession number for the sequencing data corresponding to this sampleDayRelativeToNearestHCT: day of sample collection relative to nearest day of bone marrow transplant<br>
DOI: 10.6084/m9.figshare.12016890
title: The effect of feedback valance and source on perception and metacognition: an fMRI investigation

description: The file contains the data for the behavioural results
DOI: 10.6084/m9.figshare.12016890.v1
title: The effect of feedback valance and source on perception and metacognition: an fMRI investigation

description: The file contains the data for the behavioural results
DOI: 10.6084/m9.figshare.12016815
title: Data for: Nutrient contents predict the bamboo-leaf-based diet of the Assamese macaques living in limestone forests of southwest Guangxi, China

description: <b>This is the dataset for the manuscript entitiled Nutrient contents predict the bamboo-leaf-based diet of the Assamese macaques living in limestone forests of southwest Guangxi, China. </b>
DOI: 10.6084/m9.figshare.12016815.v1
title: Data for: Nutrient contents predict the bamboo-leaf-based diet of the Assamese macaques living in limestone forests of southwest Guangxi, China

description: <b>This is the dataset for the manuscript entitiled Nutrient contents predict the bamboo-leaf-based diet of the Assamese macaques living in limestone forests of southwest Guangxi, China. </b>
DOI: 10.6084/m9.figshare.12016812.v2
title: test

description: test
DOI: 10.6084/m9.figshare.12016785
title: Figshare_image_data_03202020.zip

description: This repository provides raw data for the fluorescence microscopy images produced by the paper entitled 'Base editors for simultaneous introduction of C-to-T and A-to-G mutations' (Sakata, Ishiguro, Mori et al 2020).<br>
DOI: 10.6084/m9.figshare.12016782
title: PRISMA: Nitride oxide synthase 3 and klotho gene polymorphisms in the pathogenesis of chronic kidney disease and age-related cognitive impairment: a meta-analysis

description: PRISMA: Nitride oxide synthase 3 and klotho gene polymorphisms in the pathogenesis of chronic kidney disease and age-related cognitive impairment: a meta-analysis
DOI: 10.6084/m9.figshare.12016782.v1
title: PRISMA: Nitride oxide synthase 3 and klotho gene polymorphisms in the pathogenesis of chronic kidney disease and age-related cognitive impairment: a meta-analysis

description: PRISMA: Nitride oxide synthase 3 and klotho gene polymorphisms in the pathogenesis of chronic kidney disease and age-related cognitive impairment: a meta-analysis
DOI: 10.25810/fq7x-q521.7
title: Middle Eastern Newspaper Coverage of Climate Change or Global Warming, 2004-2020 - July 2020

description:         The Media and Climate Change Observatory Data monitors 117 sources (across newspapers, radio and TV) in 53 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.12016506
title: Gridded GDP projections compatible with the five SSPs (Shared Socioeconomic Pathways)

description: Estimated GDPs by 1/12-degree grids during 1850—2100 by 10 year intervals. In the estimation, national GDP data (past data until 2010; future projection under SSPs after 2020) is downscaled considering spatial and economic interactions among cities, urban growth patterns compatible with SSPs, and other auxiliary geographic data (land cover, road network, etc.). For the estimation methods, see Murakami et al. (in prep)<br>Murakami, D., Yoshida, Y., Yamagata, Y. (in prep) Gridded GDP projections compatible with the five SSPs (Shared Socioeconomic Pathways).
DOI: 10.6084/m9.figshare.12016383
title: Data accessibility of the paper: Wing morphology predicts individual niche specialization in Pteronotus mesoamericanus (Mammalia: Chiroptera)

description: Here we provide the values (X and Y coordinates for each anatomical landmark and specialization values (92%, 94%, 96%)) for each individual bat in order for anyone to be able to replicate the analysis from our paper.
DOI: 10.6084/m9.figshare.12016383.v1
title: Data accessibility of the paper: Wing morphology predicts individual niche specialization in Pteronotus mesoamericanus (Mammalia: Chiroptera)

description: Here we provide the values (X and Y coordinates for each anatomical landmark and specialization values (92%, 94%, 96%)) for each individual bat in order for anyone to be able to replicate the analysis from our paper.
DOI: 10.6084/m9.figshare.12016317
title: Total reference tree in newick format and 24 subtrees in newick and pdf format

description: Maximum likelihood trees in newick and pdf format including the 5S_Oaks_DB_v1 reference sequences and amplicons selected using different abundance thresholds (2; 5; 10; 25).Maximum likelihood tree of the total reference dataset in newick format.
DOI: 10.6084/m9.figshare.12016317.v1
title: 24 subtrees in newick and pdf format

description: Maximum likelihood trees in newick and pdf format including the 5S_Oaks_DB_v1 reference sequences and amplicons selected using different abundance thresholds (2; 5; 10; 25).
DOI: 10.6084/m9.figshare.12016290
title: Supplemental Table 1. JCVI NTM Genomes

description: A table of all genomes sequenced as part of the study with corresponding metadata and statistics. Supplementary Table 1.
DOI: 10.6084/m9.figshare.12016290.v1
title: Supplemental Table 1. JCVI NTM Genomes

description: A table of all genomes sequenced as part of the study with corresponding metadata and statistics. Supplementary Table 1.
DOI: 10.6084/m9.figshare.12016272
title: 5S_Oaks_DB_v1

description: Database of 1160 <i>5S intergenic spacer</i> (5S-IGS) sequences covering the taxonomic breadth and distribution range of western Eurasian <i>Quercus</i>
DOI: 10.6084/m9.figshare.12016278
title: Ngrams and figures for: Pot, kettle: Nonliteral titles aren’t (natural) science

description: Data from the paper. Pot, kettle: Nonliteral titles aren’t (natural) scienceOne worksheet contains a list of n-grams found in the titles of Scopus journal articles 1996-2019, as described in the associated article.The spreadsheet also contains the raw data for the figures from the article.
DOI: 10.6084/m9.figshare.12016272.v1
title: 5S_Oaks_DB_v1

description: Database of 1160 <i>5S intergenic spacer</i> (5S-IGS) sequences covering the taxonomic breadth and distribution range of western Eurasian <i>Quercus</i>
DOI: 10.6084/m9.figshare.12016254
title: Fig1_data_plot.csv

description: <b>Geographical prevalence of snowmelt runoff during recent decades (1985–2015) and under future warming scenarios.</b>
DOI: 10.6084/m9.figshare.12016278.v1
title: Ngrams and figures for: Funny titles aren’t (natural) science

description: Data from the paper. Funny titles aren’t (natural) scienceOne worksheet contains a list of n-grams found in the titles of Scopus journal articles 1996-2019, as described in the associated article.The spreadsheet also contains the raw data for the figures from the article.
DOI: 10.6084/m9.figshare.12016209
title: revised article data.rar

description: data
DOI: 10.6084/m9.figshare.12015729
title: 00

description: test
DOI: 10.6084/m9.figshare.12015714
title: The parameters of stereological analyses.

description: This tables are supplemental datas of the the paper titled "Actions of peripubertal gonadal steroids in the formation of sexually dimorphic brain regions in mice"
DOI: 10.6084/m9.figshare.12015729.v1
title: 2.xlsx

description: test3
DOI: 10.6084/m9.figshare.12015729.v2
title: 2.xlsx

description: test3
DOI: 10.6084/m9.figshare.12015729.v3
title: 3.xlsx

description: test3
DOI: 10.6084/m9.figshare.12015729.v4
title: 3.xlsx

description: test3
DOI: 10.6084/m9.figshare.12015729.v6
title: 3.xlsx

description: test3
DOI: 10.6084/m9.figshare.12015729.v5
title: 3.xlsx

description: test3
DOI: 10.6084/m9.figshare.12015450
title: Additional file 1 of Improved detection of esp, hyl, asa1, gelE, cylA virulence genes among clinical isolates of Enterococci

description: Additional file 1. Metadata.
DOI: 10.6084/m9.figshare.12015450.v1
title: Additional file 1 of Improved detection of esp, hyl, asa1, gelE, cylA virulence genes among clinical isolates of Enterococci

description: Additional file 1. Metadata.
DOI: 10.6084/m9.figshare.12015393
title: Additional file 3 of Disinfection exhibits systematic impacts on the drinking water microbiome

description: Additional file 3:Table S12. KEGG modules and their completeness estimates within each MAG assembled as part of this study.
DOI: 10.6084/m9.figshare.12015393.v1
title: Additional file 3 of Disinfection exhibits systematic impacts on the drinking water microbiome

description: Additional file 3:Table S12. KEGG modules and their completeness estimates within each MAG assembled as part of this study.
DOI: 10.6084/m9.figshare.12015387
title: Additional file 2 of Disinfection exhibits systematic impacts on the drinking water microbiome

description: Additional file 2:Table S11. Summary statistics for metagenome assembled genomes (MAGs) extracted from the metagenome assemblies. Metagenome assembled genomes (MAG) were finalized after dereplication using dRep (https://github.com/MrOlm/drep) using all MAGs assembled in this study. As a result, the name assigned to a MAG does not represent sampling location it was assembled from. MAGs were assigned taxonomy using the Genome taxonomy database (GTDBTK: https://gtdb.ecogenomic.org/) version 0.1.3. The completeness and redundancy of MAGs was estimated using CheckM (https://github.com/Ecogenomics/CheckM/wiki) version 1.0.7. Only MAGs &gt;50% completeness and &lt;10% redundancy were included in the study. The genome statistics were estimated using Prokka. The coding density was estimated by dividing the cumulative length of coding sequences (CDS) divided by the length of the MAG. The MAGs were assigned four categories, "D-only", "ND-only", "Both", and "Other". "D-only" was assigned to MAGs detected in &gt;20% of disinfected samples and not detected in non-disinfected samples. "ND-only" was assigned to MAGs detected in &lt;20% of disinfected samples and not detected of non-disinfected samples. "Both" was assigned to MAGs that were detected in &gt;20% of disinfected and non-disinfected samples. "Other" was assigned to MAGs that did not fall in either of the above three classes. (see excel spreadsheet).
DOI: 10.6084/m9.figshare.12015387.v1
title: Additional file 2 of Disinfection exhibits systematic impacts on the drinking water microbiome

description: Additional file 2:Table S11. Summary statistics for metagenome assembled genomes (MAGs) extracted from the metagenome assemblies. Metagenome assembled genomes (MAG) were finalized after dereplication using dRep (https://github.com/MrOlm/drep) using all MAGs assembled in this study. As a result, the name assigned to a MAG does not represent sampling location it was assembled from. MAGs were assigned taxonomy using the Genome taxonomy database (GTDBTK: https://gtdb.ecogenomic.org/) version 0.1.3. The completeness and redundancy of MAGs was estimated using CheckM (https://github.com/Ecogenomics/CheckM/wiki) version 1.0.7. Only MAGs &gt;50% completeness and &lt;10% redundancy were included in the study. The genome statistics were estimated using Prokka. The coding density was estimated by dividing the cumulative length of coding sequences (CDS) divided by the length of the MAG. The MAGs were assigned four categories, "D-only", "ND-only", "Both", and "Other". "D-only" was assigned to MAGs detected in &gt;20% of disinfected samples and not detected in non-disinfected samples. "ND-only" was assigned to MAGs detected in &lt;20% of disinfected samples and not detected of non-disinfected samples. "Both" was assigned to MAGs that were detected in &gt;20% of disinfected and non-disinfected samples. "Other" was assigned to MAGs that did not fall in either of the above three classes. (see excel spreadsheet).
DOI: 10.6084/m9.figshare.12015330
title: Additional file 3 of Whole-genome sequencing of Puccinia striiformis f. sp. tritici mutant isolates identifies avirulence gene candidates

description: Additional file 3: Table SE1. 62 genes considered as candidates for avirulence genes and their genome positions and derived amino acids. Table SE2. Orthogroups of Puccinia striiformis f. sp. tritici (Pst) avirulence gene candidates in isolate Pst 11–281 detected in other 12 fungal isolates. Table SE3. Search results of candidate genes identified in Puccinia striiformis f. sp. tritici (Pst) isolate Pst 11–281 against four P. striiformis protein databases using NCBI BLAST.
DOI: 10.6084/m9.figshare.12015330.v1
title: Additional file 3 of Whole-genome sequencing of Puccinia striiformis f. sp. tritici mutant isolates identifies avirulence gene candidates

description: Additional file 3: Table SE1. 62 genes considered as candidates for avirulence genes and their genome positions and derived amino acids. Table SE2. Orthogroups of Puccinia striiformis f. sp. tritici (Pst) avirulence gene candidates in isolate Pst 11–281 detected in other 12 fungal isolates. Table SE3. Search results of candidate genes identified in Puccinia striiformis f. sp. tritici (Pst) isolate Pst 11–281 against four P. striiformis protein databases using NCBI BLAST.
DOI: 10.6084/m9.figshare.12015228
title: Additional file 3 of Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities

description: Additional file 3. Accession numbers of protein sequences used to calculate the phylogenetic tree.
DOI: 10.6084/m9.figshare.12015231
title: Additional file 4 of Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities

description: Additional file 4. Phylogenetic tree of AMEs, GAR and the most closely related proteins in Newick format.
DOI: 10.6084/m9.figshare.12015231.v1
title: Additional file 4 of Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities

description: Additional file 4. Phylogenetic tree of AMEs, GAR and the most closely related proteins in Newick format.
DOI: 10.6084/m9.figshare.12015228.v1
title: Additional file 3 of Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities

description: Additional file 3. Accession numbers of protein sequences used to calculate the phylogenetic tree.
DOI: 10.6084/m9.figshare.12015216
title: Additional file 1 of Characteristics of sleep/wake problems and delivery outcomes among pregnant Japanese women without gestational complications

description: Additional file 1. Data file.
DOI: 10.6084/m9.figshare.12015219
title: Additional file 2 of Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities

description: Additional file 2. List of metagenomes searched for the presence of gar.
DOI: 10.6084/m9.figshare.12015216.v1
title: Additional file 1 of Characteristics of sleep/wake problems and delivery outcomes among pregnant Japanese women without gestational complications

description: Additional file 1. Data file.
DOI: 10.6084/m9.figshare.12015219.v1
title: Additional file 2 of Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities

description: Additional file 2. List of metagenomes searched for the presence of gar.
DOI: 10.6084/m9.figshare.12015177
title: Additional file 4 of Comparison of RNA isolation methods on RNA-Seq: implications for differential expression and meta-analyses

description: Additional file 4. GO enrichments for clusters in Fig. 3.
DOI: 10.6084/m9.figshare.12015177.v1
title: Additional file 4 of Comparison of RNA isolation methods on RNA-Seq: implications for differential expression and meta-analyses

description: Additional file 4. GO enrichments for clusters in Fig. 3.
DOI: 10.6084/m9.figshare.12015168
title: Additional file 2 of Comparison of RNA isolation methods on RNA-Seq: implications for differential expression and meta-analyses

description: Additional file 2. RSEM Output.
DOI: 10.6084/m9.figshare.12015174
title: Additional file 3 of Comparison of RNA isolation methods on RNA-Seq: implications for differential expression and meta-analyses

description: Additional file 3. EdgeR Output.
DOI: 10.6084/m9.figshare.12015168.v1
title: Additional file 2 of Comparison of RNA isolation methods on RNA-Seq: implications for differential expression and meta-analyses

description: Additional file 2. RSEM Output.
DOI: 10.6084/m9.figshare.12015174.v1
title: Additional file 3 of Comparison of RNA isolation methods on RNA-Seq: implications for differential expression and meta-analyses

description: Additional file 3. EdgeR Output.
DOI: 10.6084/m9.figshare.12015123
title: Digitised Iceberg locations

description: Digitised iceberg locations used in the float path shown in Figure 3 or Wallace et al.<br>
DOI: 10.6084/m9.figshare.12015126
title: Data from: Bathymetry-constrained navigation of Argo floats under sea ice on the Antarctic continental shelf

description: The data used in the publication Wallace et al. 2020. Three types of data are including;<br>1. Spreadsheets (<i>FLOAT_</i>position_data.xlsx) for the seven floats analyzed in the paper containing positioning information<br>2. Matlab mat files (float<i>FLOAT_py</i>.mat) containing further information describing the floats<br>3. A digitized iceberg mask in mat format (bergmask.mat)<br>
DOI: 10.6084/m9.figshare.12015126.v1
title: Data from: Bathymetry-constrained navigation of Argo floats under sea ice on the Antarctic continental shelf

description: The data used in the publication Wallace et al. 2020. Three types of data are including;<br>1. Spreadsheets (<i>FLOAT_</i>position_data.xlsx) for the seven floats analyzed in the paper containing positioning information<br>2. Matlab mat files (float<i>FLOAT_py</i>.mat) containing further information describing the floats<br>3. A digitized iceberg mask in mat format (bergmask.mat)<br>
DOI: 10.6084/m9.figshare.12015129
title: miRNA raw data.zip

description: figure raw data
DOI: 10.6084/m9.figshare.12015120
title: PM-RGC-part27-42

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12015123.v1
title: Digitised Iceberg locations

description: Digitised iceberg locations used in the float path shown in Figure 3 or Wallace et al.<br>
DOI: 10.6084/m9.figshare.12015129.v2
title: miRNA raw data.zip

description: figure raw data
DOI: 10.6084/m9.figshare.12015129.v1
title: miRNA raw data.zip

description: figure raw data
DOI: 10.6084/m9.figshare.12015120.v1
title: PM-RGC-part27-42

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12015120.v2
title: PM-RGC-part27-42

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12015120.v3
title: PM-RGC-part27-42

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12015120.v4
title: PM-RGC-part27-42

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12015120.v5
title: PM-RGC-part27-42

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12015120.v6
title: PM-RGC-part27-42

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12015105
title: Argo Float Mat files

description: Matlab mat files describing cycle locations of 7 Argo floats deployed in the Mertz polunya. These files contain information that can also be extracted from netcdf files from an Argo GDAC.