cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22793984
title: datavc.xlsx

description: This multicenter, cross-sectional study was conducted from December 1, 2022, to January 30, 2023. The study was sent by the nursing staff to each bariatric surgery patient as an electronic questionnaire. The survey included three main parts :(1) basic patient information, including age, sex, preoperative and current BMI, and date of surgery; (2) COVID-19-related information, including COVID-19 vaccination status, time to negative conversion, and nutrient supplementation during infection.
DOI: 10.6084/m9.figshare.22793984.v2
title: datavc.xlsx

description: This multicenter, cross-sectional study was conducted from December 1, 2022, to January 30, 2023. The study was sent by the nursing staff to each bariatric surgery patient as an electronic questionnaire. The survey included three main parts :(1) basic patient information, including age, sex, preoperative and current BMI, and date of surgery; (2) COVID-19-related information, including COVID-19 vaccination status, time to negative conversion, and nutrient supplementation during infection.
DOI: 10.6084/m9.figshare.22793984.v1
title: datavc.xlsx

description: This multicenter, cross-sectional study was conducted from December 1, 2022, to January 30, 2023. The study was sent by the nursing staff to each bariatric surgery patient as an electronic questionnaire. The survey included three main parts :(1) basic patient information, including age, sex, preoperative and current BMI, and date of surgery; (2) COVID-19-related information, including COVID-19 vaccination status, time to negative conversion, and nutrient supplementation during infection.
DOI: 10.5066/p991rsfo
title: Model parameter input files to compare locations of coral reef restoration on different reef profiles to reduce coastal flooding

description: This dataset consists of physics-based XBeach Non-hydrostatic hydrodynamic models input files used to study how coral reef restoration affects waves and wave-driven water levels over coral reefs, and the resulting wave-driven runup on the adjacent shoreline. Coral reefs are effective natural coastal flood barriers that protect adjacent communities. Coral degradation compromises the coastal protection value of reefs while also reducing their other ecosystem services, making them a target for restoration. Here we provide a physics-based evaluation of how coral restoration can reduce coastal flooding for various types of reefs. These input files accompany the modeling conducted for the following publication: Roelvink, F.E., Storlazzi, C.D., van Dongeren, A.R., and Pearson, S.G., 2021, Coral reef restorations can be optimized to reduce coastal flooding hazards: Frontiers in Marine Science, https://doi.org/10.3389/fmars.2021.653945.
DOI: 10.5066/p9964tkx
title: Orthophotomosaics, elevation point clouds, digital surface elevation models and supporting data from the north coast of Barter Island, Alaska

description: Aerial photographs were collected from a small, fixed-wing aircraft over the coast of Barter Island, Alaska on three separate dates: July 01 2014, September 07 2014, and July 05 2015. Precise aircraft position information and structure-from-motion photogrammetric methods were combined to derive high-resolution orthophotomosaics and elevation point clouds. Ground control acquired using precise positioning were used to co-register the data sets to assess accuracy of the data sets. Data were shifted into common earth-based datum established from surveyed ground control points and edited to remove outliers, structures, and spurious elevation values associated with moving water surfaces. The horizontal coordinate system is WGS84, UTM Zone 7 North meters; vertical coordinates are relative to the GRS80 ellipsoid.
DOI: 10.5066/p99diqz5
title: CTD profiles and discrete water-column measurements collected off California and Oregon during NOAA cruise SH-18-12 (USGS field activity 2018-663-FA) from October to November 2018 (ver. 2.0, September 2021)

description: Various water column variables, including salinity, dissolved inorganic nutrients, pH, total alkalinity, dissolved inorganic carbon, radio-carbon isotopes were measured in samples collected using a Niskin-bottle rosette at selected depths from sites offshore of California and Oregon from October to November 2018 during NOAA cruise SH-18-12 on the R/V Bell M. Shimada (USGS field activity 2018-663-FA). CTD (Conductivity Temperature Depth) data were also collected at each depth that a Niskin-bottle sample was collected and are presented along with the water sample data.
DOI: 10.26302/sshade/experiment_gm_20190905_001
title: Raman spectra of some oxide-hydroxide minerals
DOI: 10.5066/p99mj096
title: CTD profiles and discrete water-column measurements collected off California and Oregon during NOAA cruise SH-18-12 (USGS field activity 2018-663-FA) from October to November 2018 (ver. 3.0, July 2022)

description: This data release supersedes version 2.0, published in September 2021 at https://doi.org/10.5066/P99DIQZ5. Versioning details are documented in the accompanying VersionHistory_P99MJ096.txt file. Various water column variables, including salinity, dissolved inorganic nutrients, pH, total alkalinity, dissolved inorganic carbon, radio-carbon isotopes were measured in samples collected using a Niskin-bottle rosette at selected depths from sites offshore of California and Oregon from October to November 2018 during NOAA cruise SH-18-12 on the R/V Bell M. Shimada (USGS field activity 2018-663-FA). CTD (Conductivity Temperature Depth) data were also collected at each depth that a Niskin-bottle sample was collected and are presented along [...]
DOI: 10.5066/p9a0hfkv
title: Model parameter input files to compare the influence of channels in fringing coral reefs on alongshore variations in wave-driven runup along the shoreline

description: An extensive set of physics-based XBeach Non-hydrostatic hydrodynamic model simulations (with input files here included) were used to evaluate the influence of shore-normal reef channels on flooding along fringing reef-lined coasts, specifically during extreme wave conditions when the risk for coastal flooding and the resulting impact to coastal communities is greatest. These input files accompany the modeling conducted for the following publication: Storlazzi, C.D., Rey, A.E., and van Dongeren, A.R., 2022, A numerical study of geomorphic and oceanographic controls on wave-driven runup on fringing reefs with shore-normal channels: Journal of Marine Science and Engineering, 10(6), 828, https://doi.org/10.3390/jmse10060828.
DOI: 10.26036/cnp0000325
title: Human Cell Landscape at the Single-Cell Level

description: We used single-cell RNA sequencing to determine cell type composition of all major human organs and construct a basic scheme for the human cell landscape (HCL). We reveal a single-cell hierarchy for many tissues that has not been well characterized previously. We present a ‘‘single-cell HCL analysis’’ pipeline that accurately defines human cell types; and exemplify its utility in stem cell biology. Finally, we perform single-cell comparative analysis for human and mouse cell atlas to reveal the conserved genetic networks in the mammalian system.
DOI: 10.6084/m9.figshare.22795868
title: MI_bvFTD

description: EEG source space connectivity matrices of patients with behavioral variant frontotemporal dementia computed with mutual information (CMI)
DOI: 10.6084/m9.figshare.22795868.v1
title: MI_bvFTD

description: EEG source space connectivity matrices of patients with behavioral variant frontotemporal dementia computed with mutual information (CMI)
DOI: 10.5066/p9au5i03
title: Multibeam bathymetry and acoustic-backscatter data collected in 2017 and 2018 of Noyes Submarine Canyon and vicinity, southeast Alaska

description: This data release provides U.S. Geological Survey (USGS), Pacific Coastal and Marine Science Center (PCMSC) and National Oceanic and Atmospheric Administration (NOAA) 2017 and 2018 bathymetry and acoustic-backscatter data collected on the Noyes Submarine Canyon and vicinity in southeast Alaska. In 2017 and 2018 the NOAA survey vessel Fairweather collected bathymetry and acoustic-backscatter data using a Kongsberg EM-710 multibeam echosounder (NOAA survey D00208, Report for D00208 (noaa.gov) and NOAA survey D00245, Report for D00245 (noaa.gov)). The surveys were conducted to map the offshore expression of the Queen Charlotte-Fairweather fault system that runs for approximately 500 kilometers off the coast of southeast Alaska and British Columbia. These surveys were part of a series of surveys to map the entire offshore component of the fault. The fault system has generated numerous powerful earthquakes in the magnitude 7 and 8 range. This new mapping will help understand the fault's slip rate, earthquake recurrence intervals, and paleoseismic history. The data provided in this data release were post-processed by PCMSC for these research studies.
DOI: 10.5066/p9b080yi
title: Parent and alkylated polycyclic aromatic hydrocarbons (PAHs) and per- and polyfluoroalkyl substances (PFAS) in north San Francisco Bay, Napa River, and Sonoma Creek in 2018 and 2019

description: Sediment grain-size distributions, stable carbon isotope ratios (d13C), total carbon to total nitrogen ratios (C:N), short-lived radionuclides (Beryllium-7, Cesium-137, and Lead-210), concentrations of 76 parent and alkylated polycyclic aromatic hydrocarbons (PAHs) and concentrations of 33 per- and polyfluoroalkyl substances (PFAS) were measured in the northern reach of San Francisco Bay (San Pablo and Suisun Bays), and in stream beds of the lower reaches of Napa River and Sonoma Creek, 5 months and 20 months after the 2017 Atlas and Nuns wildfires. New sites for sediment geochemistry analyses added 20 months post-fire included the lower reaches of Petaluma Creek and Suisun Slough, and in marsh sediment on Napa River and Sonoma Creek.
DOI: 10.5066/p9blaj72
title: Multichannel minisparker and chirp seismic reflection data of USGS field activity 2016-616-FA collected in the Catalina Basin offshore southern California in February 2016

description: This data release contains 25 multichannel minisparker seismic reflection (MCS) profiles and 41 chirp sub-bottom profiles that were collected in February of 2016 from the Catalina Basin offshore southern California by the U.S. Geological Survey Pacific and Coastal Marine Science Center in cooperation with the University of Washington. Data were collected aboard the University of Washington's R/V Thomas G. Thompson on USGS cruise 2016-616-FA. MCS profiles were collected to image the Catalina and San Clemente fault systems as well as the San Gabriel Canyon and Channel system.
DOI: 10.6084/m9.figshare.22794086
title: datareport.xlsx

description: This was a multicenter, cross-sectional study conducted from December 1, 2022, to January 30, 2023. The study was sent by the nursing staff to each bariatric surgery patient in the form of an electronic questionnaire. The survey included three main parts :(1) basic information about patients, including age, sex, preoperative and postoperative BMI, and date of surgery; (2) COVID-19-related information, including COVID-19 vaccination status, symptoms after infection, drug use, time to negative conversion, etc.; (3) changes in body weight, physical exercise habits, and nutrient supplementation during infection. The disease characteristics of COVID-19 in these patients were evaluated.
DOI: 10.6084/m9.figshare.22794086.v3
title: datareport.xlsx

description: This was a multicenter, cross-sectional study conducted from December 1, 2022, to January 30, 2023. The study was sent by the nursing staff to each bariatric surgery patient in the form of an electronic questionnaire. The survey included three main parts :(1) basic information about patients, including age, sex, preoperative and postoperative BMI, and date of surgery; (2) COVID-19-related information, including COVID-19 vaccination status, symptoms after infection, drug use, time to negative conversion, etc.; (3) changes in body weight, physical exercise habits, and nutrient supplementation during infection. The disease characteristics of COVID-19 in these patients were evaluated.
DOI: 10.5066/p9c39wne
title: Coral reef profiles for wave-runup prediction

description: This data release includes representative cluster profiles (RCPs) from a large (&gt;24,000) selection of coral reef topobathymetric cross-shore profiles (Scott and others, 2020). We used statistics, machine learning, and numerical modelling to develop the set of RCPs, which can be used to accurately represent the shoreline hydrodynamics of a large variety of coral reef-lined coasts around the globe. In two stages, the data were reduced by clustering cross-shore profiles based on morphology and hydrodynamic response to typical wind and swell wave conditions. By representing a large variety of coral reef morphologies with a reduced number of RCPs, a computationally feasible number of numerical model simulations can be done to obtain wave-runup estimates. The RCPs identified here can be combined with probabilistic tools that can provide an enhanced prediction given a multivariate wave and water level climate and reef ecology state. These data accompany the following publication: Scott, F., Antolinez, J.A., McCall, R.T., Storlazzi, C.D., Reniers, A., and Pearson, S., 2020, Hydro-morphological characterization of coral reefs for wave runup prediction: Frontiers in Marine Science, https://doi.org/10.3389/fmars.2020.000361.
DOI: 10.6084/m9.figshare.22794086.v2
title: Sex Differences In Patients Infected With COVID-19 After Bariatric Surgery: A Multicenter Cross-Sectional Study

description: This was a multicenter, cross-sectional study conducted from December 1, 2022, to January 30, 2023. The study was sent by the nursing staff to each bariatric surgery patient in the form of an electronic questionnaire. The survey included three main parts :(1) basic information about patients, including age, sex, preoperative and postoperative BMI, and date of surgery; (2) COVID-19-related information, including COVID-19 vaccination status, symptoms after infection, drug use, time to negative conversion, etc.; (3) changes in body weight, physical exercise habits, and nutrient supplementation during infection. The disease characteristics of COVID-19 in these patients were evaluated.
DOI: 10.5066/p9d9ldep
title: Flooding extent polygons for modelled wave-driven water levels in Florida with and without projected coral reef degradation

description: This data release presents projected flooding extent polygon (flood masks) shapefiles based on wave-driven total water levels for the State Florida (the Florida Peninsula and the Florida Keys). There are 12 associated flood mask shapefiles: one for each of four nearshore wave energy return periods (rp; 10-, 50-, 100-, and 500-years), the current scenario (base) and each of the degradation scenarios (Mean Elevation and Mean Erosion).
DOI: 10.5066/p9dk9o60
title: Time-series data of water surface elevation, waves, currents, temperature, and turbidity collected between November 2017 and March 2018 off the west coast of Maui, Hawaii, USA

description: Time-series data of water surface elevation, waves, currents, temperature, and turbidity collected between November 2017 and March 2018 off the west coast of Maui, Hawaii, USA. The data are available in NetCDF format, grouped together in zip files by instrument site location. These data support a modeling study on the effects of potential watershed restoration on decreasing sediment loads to adjacent reefs (Storlazzi and others, 2023).
DOI: 10.5066/p9dru8tp
title: Carbonate chemistry measurements of authigenic carbonates collected offshore the U.S. Mid- and South Atlantic in 2018 and 2019 as part of the DEEPSEARCH Project

description: Geochemical analysis of carbonate rock samples collected from seep fields on the RB1903 and AT41 research expeditions in the U.S. Mid- and South Atlantic. Samples were collected as a fingerprint to past hydrocarbon seep activity, fluid source, and depositional environment.
DOI: 10.6084/m9.figshare.22795943
title: O-info_bvFTD

description: EEG source space connectivity matrices of patients with behavioral variant frontotemporal dementia computed with mutual information (CMI)
DOI: 10.6084/m9.figshare.22795943.v1
title: O-info_bvFTD

description: EEG source space connectivity matrices of patients with behavioral variant frontotemporal dementia computed with mutual information (CMI)
DOI: 10.5066/p9dtwc3i
title: Geochemistry time series and growth parameters from Tutuila, American Samoa coral record (ver. 2.0, June 2021)

description: Geochemical analysis (including radiocarbon, stable carbon isotope, and elemental composition) and growth parameters (including calcification rate, density, and extension information) were measured from a coral core collected from a reef off the southern side of Tutuila, American Samoa. The core was collected near Matautuloa Point on 8 April 2012 in collaboration with the Ecosystem Sciences Division, Pacific Islands Fisheries Science Center, National Oceanic and Atmospheric Administration (NOAA), Honolulu, HI.
DOI: 10.5066/p9ehobko
title: Projected flooding extents and depths based on 10-, 50-, 100-, and 500-year wave-energy return periods for the State of Florida and the Commonwealth of Puerto Rico before and after Hurricanes Irma and Maria due to the storms' damage to the coral reefs

description: This data release provides flooding extent polygons based on wave-driven total water levels for the coral lined coast of Florida and the Commonwealth of Puerto Rico. The wave and sea-level conditions were then propagated using the XBeach over 100-m spaced shore-normal transects modified to account for base and post-storm scenarios. In situ observations following hurricanes Irma and Maria were used to create classifications of impact level to reefs where 0 = no impact, 0 - 0.05 = minor impact, 0.05 - 0.15 = moderate impact, and 0.15 - 1.00 = major impact. Categories were converted into numeric values of 0, 1, 2, and 3 that corresponded with the none, minor, moderate, and major damage category, respectively. These damage category values were interpolated using inverse distance weighting and clipped to coral and hardbottom extent. The clipped categories were converted into raster datasets for model input. Transect depth profiles were modified to reflect post-storm conditions by intersecting each profile with first a coral coverage class raster and then a reef damage raster that categorized the degree of damage from 0 (no damage) to 3 (major damage). There are 5 classes of coral cover raster described within the data set up: sand, 0-10% coral uncolonized hardbottom, 10-50% coral colonized hardbottom, 50-90% coral colonization, and more than 90% coral colonization. The greater colonization results in higher rugosity and thus hydrodynamic roughness via friction and was parameterized per van Dongeren and others (2013) and Quataert and others (2015). Where the locations along each transect were coincident with one of the damage-assessment locations, a reduction in roughness, fw and cf, and/or an increase in profile depth were applied. The changes to bathymetry and roughness were then carried on to each Xbeach model run to ascertain the change in flooding from large events due to the damage of the reefs. For each state/territory there are 8 associated flood extent shapefiles: one for each of four nearshore wave energy return periods (rp; 10-, 50-, 100-, and 500-years), and either the current scenario (base) or the post-storm scenario. These flood extents can be combined with economic, ecological, and engineering tools to provide a rigorous financial valuation of the coastal protection benefits of coral reefs of Florida and Puerto Rico. These data accompany: Storlazzi, C.D., Reguero, B.G., Viehman, T.S., Cumming, K.A., Cole, A.D., Shope, J.A., Groves, S.H., Gaido L., C., Nickel, B.A., and Beck, M.W., 2021, Rigorously valuing the impact of Hurricanes Irma and Maria on coastal hazard risks in Florida and Puerto Rico: U.S. Geological Survey Open-File Report 2021-1056, 29 p., https://doi.org/10.3133/ofr20211056.
DOI: 10.5066/p9f0ljnc
title: Near-shore seawater-column measurements of excess radon (Rn-222) and water levels, Faga'alu Bay, Tutuila, American Samoa, August 2018

description: This data table includes in-situ near-shore seawater measurements of excess radon (Rn-222) and water levels collected in Faga'alu Bay, Tutuila, American Samoa.
DOI: 10.5066/p9f7k9f2
title: CTD (Conductivity Temperature Depth) data collected October-November 2019 offshore of California and Oregon

description: CTD (Conductivity Temperature Depth) data were collected October-November 2019 offshore of California and Oregon as part of the ongoing EXPRESS: Expanding Pacific Research and Exploration of Submerged Systems project. The data were collected using an SBE 49 FastCAT V 1.2a CTD profiler attached to the &ldquo;Yogi&rdquo; ROV launched from the National Oceanic and Atmospheric Administration&rsquo;s (NOAA&rsquo;s) R/V Reuben Lasker (NOAA cruise R-19-05).
DOI: 10.5066/p9fqq5jn
title: Bathymetry and acoustic backscatter data from Floras Lake, Oregon, June 2018

description: This publication releases single-beam bathymetry and backscatter datasets acquired by the U.S. Geological Survey (USGS) during surveys performed on Floras Lake, Oregon, in June 2018. Bathymetry and backscatter data were collected using two personal watercraft (PWCs) equipped with single-beam sonar systems, sidescan sonar systems, and global navigation satellite system (GNSS) receivers. Bathymetry data are provided as point data in a comma-separated text file and are projected in cartesian coordinates using the Universal Transverse Mercator (UTM), Zone 10 North, meters coordinate system, with elevations relative to the NAVD88 vertical datum. Acoustic-backscatter data are provided as a GeoTIFF file also projected in UTM Zone 10 North, meters coordinate system.
DOI: 10.5066/p9fsg90o
title: Waiakane, Molokai, HI, 2018 Coral Reef Circulation and Sediment Dynamics Experiment

description: Coral reefs generate significant volumes of carbonate sediment that becomes the primary source of beach material along many low-latitude shorelines that protect hundreds of millions of people globally. Despite this fact, there is little understanding of the specific processes that transport the carbonate sediment produced on the outer portions of coral reefs to the shoreline, let alone how those processes may be affected by projected sea-level rise. To better constrain the influence of sea-level rise on waves and sediment transport over a fringing coral reef flat, an experiment was conducted across a large fringing reef off the south shore of Molokai, Hawaii. Here we provide data on water levels, waves, currents observed during this field effort.
DOI: 10.5066/p9fz16vg
title: Measurements of zinc, oxygen, and pH, from sphalerite and ZnS oxidation in seawater

description: This data release presents the concentration of zinc, oxygen, pH, temperature, and the time point at which measurements were taken for experimental oxidation work regarding zinc and copper sulfide minerals. These data accompany the following publication: Gartman, A., Whisman, S.P., and Hein, J.R., 2020, Interactive oxidation of sphalerite and covellite in seawater: implications for seafloor massive sulfide deposits and mine waste: ACS Earth and Space Chemistry, https://doi.org/10.1021/acsearthspacechem.0c00177, where they are also presented as Supplemental Table 1.