cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13217801
title: OWL2VecOA Resources for Bio-ML 2023

description: 1. The repository omim2ordo_exp_results.zip contains results of applying our extended  OWL2VecOA method to biomedical ontology alignments, specifically focusing on the alignment between OMIM and ORDO. 

The specifications are: walk depth = 3, embedding size =100, iteration =70, walker iteration k=20. 

The alignment process utilized a combined approach, integrating results from two well-established ontology matching systems: AML and LogMap. Specifically the following input configurations were used:



Train.tsv (from BIO-ML Track 2023) combined with the intersection of AML and LogMap alignments

Train.tsv combined with the union of AML and LogMap alignments

Train.tsv combined with LogMap alignments (Logmapping)

Train.tsv combined with LogMap alignments (Anchor Mappings)

Train.tsv combined with LogMap alignments (OverEstimation Mappings)

Train.tsv only


2. The repository "owl2vecstart_initres_2&3.zip" contains the results of applying the initial version of the OWL2VecStar method to biomedical ontology alignments 2023 : OMIM-ORDO (o2o), NCIT-DOID (ncit2doid), SNOMED-NCIT-N (s2nn), and SNOMED-NCIT-PHARMA (sn2p) with walk depths of 2 and 3. Similarly, the repository "owl2vecstar_initres_4&5.zip" contains analogous results, but with walk depths of 4 and 5  

3. The repository "owl2vecOA_results_2&3.zip" contains the results of applying our extended OWL2VecOA method to the BIO-ML  datasets, utilizing walk depths of 2 and 3.

The results package contains three key components of each input data: Embedding file, Cosine Similarity Scores file and Euclidian Distance Scores file. The embedding files can be used for various ML downstream tasks, while the similarity and distance scores provide direct measures of entity relatedness, potentially useful for ontology alignment, entity matching, or other biomedical informatics applications. 
description: Embedding file: This file contains vector representations of ontology entities (concepts, properties, and instances) from both OMIM and ORDO. These embeddings capture semantic information from the ontologies in a dense vector space.

Cosine similarity scores file: This file provides cosine similarity scores between the vector representations of source (OMIM) and target (ORDO) entities. Cosine similarity is a measure of similarity between two non-zero vectors, often used to compare the semantic relatedness of entities in vector space.

Euclidean distance scores file: This file contains Euclidean distance scores between the vector representations of source and target entities. Euclidean distance measures the straight-line distance between two points in the vector space and can be used as another metric for entity similarity.
DOI: 10.5281/zenodo.13217802
title: OWL2VecOA OMIM-ORDO Alignment Dataset with AML and LogMap Integration

description: The repository contains results of applying the OWL2VecOA method to biomedical ontology alignments, specifically focusing on the alignment between OMIM and ORDO. 

The specifications are: walk depth = 3, embedding size =100, iteration =70, walker iteration k=20. 

The alignment process utilized a combined approach, integrating results from two well-established ontology matching systems: AML and LogMap. Specifically the following input configurations were used:



Train.tsv (from BIO-ML Track 2023) combined with the intersection of AML and LogMap alignments

Train.tsv combined with the union of AML and LogMap alignments

Train.tsv combined with LogMap alignments (Logmapping)

Train.tsv combined with LogMap alignments (Anchor Mappings)

Train.tsv combined with LogMap alignments (OverEstimation Mappings)

Train.tsv only


The results package contains three key components of each input data: Embedding file, Cosine Similarity Scores file and Euclidian Distance Scores file. The embedding files can be used for various ML downstream tasks, while the similarity and distance scores provide direct measures of entity relatedness, potentially useful for ontology alignment, entity matching, or other biomedical informatics applications. 
description: Embedding file: This file contains vector representations of ontology entities (concepts, properties, and instances) from both OMIM and ORDO. These embeddings capture semantic information from the ontologies in a dense vector space.

Cosine similarity scores file: This file provides cosine similarity scores between the vector representations of source (OMIM) and target (ORDO) entities. Cosine similarity is a measure of similarity between two non-zero vectors, often used to compare the semantic relatedness of entities in vector space.

Euclidean distance scores file: This file contains Euclidean distance scores between the vector representations of source and target entities. Euclidean distance measures the straight-line distance between two points in the vector space and can be used as another metric for entity similarity.
DOI: 10.5281/zenodo.13309009
title: OWL2VecOA Resources for Bio-ML 2023

description: 1. The repository omim2ordo_exp_results.zip contains results of applying our extended  OWL2VecOA method to biomedical ontology alignments, specifically focusing on the alignment between OMIM and ORDO. 

The specifications are: walk depth = 3, embedding size =100, iteration =70, walker iteration k=20. 

The alignment process utilized a combined approach, integrating results from two well-established ontology matching systems: AML and LogMap. Specifically the following input configurations were used:



Train.tsv (from BIO-ML Track 2023) combined with the intersection of AML and LogMap alignments

Train.tsv combined with the union of AML and LogMap alignments

Train.tsv combined with LogMap alignments (Logmapping)

Train.tsv combined with LogMap alignments (Anchor Mappings)

Train.tsv combined with LogMap alignments (OverEstimation Mappings)

Train.tsv only


2. The repository "owl2vecstart_initres_2&3.zip" contains the results of applying the initial version of the OWL2VecStar method to biomedical ontology alignments 2023 : OMIM-ORDO (o2o), NCIT-DOID (ncit2doid), SNOMED-NCIT-N (s2nn), and SNOMED-NCIT-PHARMA (sn2p) with walk depths of 2 and 3. Similarly, the repository "owl2vecstar_initres_4&5.zip" contains analogous results, but with walk depths of 4 and 5  

3. The repository "owl2vecOA_results_2&3.zip" contains the results of applying our extended OWL2VecOA method to the BIO-ML  datasets, utilizing walk depths of 2 and 3.

The results package contains three key components of each input data: Embedding file, Cosine Similarity Scores file and Euclidian Distance Scores file. The embedding files can be used for various ML downstream tasks, while the similarity and distance scores provide direct measures of entity relatedness, potentially useful for ontology alignment, entity matching, or other biomedical informatics applications. 
description: Embedding file: This file contains vector representations of ontology entities (concepts, properties, and instances) from both OMIM and ORDO. These embeddings capture semantic information from the ontologies in a dense vector space.

Cosine similarity scores file: This file provides cosine similarity scores between the vector representations of source (OMIM) and target (ORDO) entities. Cosine similarity is a measure of similarity between two non-zero vectors, often used to compare the semantic relatedness of entities in vector space.

Euclidean distance scores file: This file contains Euclidean distance scores between the vector representations of source and target entities. Euclidean distance measures the straight-line distance between two points in the vector space and can be used as another metric for entity similarity.
DOI: 10.15468/dl.57wr3q
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is El Salvador",
 "TaxonKey is Herpailurus yagouaroundi (É.Geoffroy Saint-Hilaire, 1803)"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063498-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cde8fj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.403189 -32.342283, 148.403189 -32.344529, 148.398697 -32.344529, 148.398697 -32.349021, 148.400943 -32.349021, 148.400943 -32.351267, 148.405435 -32.351267, 148.405435 -32.344529, 148.40768 -32.344529, 148.40768 -32.342283, 148.403189 -32.342283))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063499-240626123714530/datasets/export for details.
DOI: 10.15468/dl.jynmx2
title: Occurrence Download

description: A dataset containing 280648 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-52.78265 47.5074, -52.67806 47.5074, -52.67806 47.61056, -52.78265 47.61056, -52.78265 47.5074))",
 "Year is greater than or equal to 2000",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 280648 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063493-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzumpw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((143.09412 -37.341432, 143.09412 -37.343678, 143.100857 -37.343678, 143.100857 -37.341432, 143.09412 -37.341432))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063500-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.13309055
title: FREESCOO heat exchanger testing

description: This dataset is associated with the related FREESCOO publication where the data is used to calibrate and validate a 2D model of a Dessicant Evaporative Cooling device.
DOI: 10.5281/zenodo.13309056
title: FREESCOO heat exchanger testing

description: This dataset is associated with the related FREESCOO publication where the data is used to calibrate and validate a 2D model of a Dessicant Evaporative Cooling device.
DOI: 10.15468/dl.xp7t5t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.694523 -32.344529, 149.694523 -32.346775, 149.699015 -32.346775, 149.699015 -32.344529, 149.694523 -32.344529))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063501-240626123714530/datasets/export for details.
DOI: 10.15468/dl.wvvxmn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((143.296242 -37.341432, 143.296242 -37.343678, 143.298488 -37.343678, 143.298488 -37.341432, 143.296242 -37.341432))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063502-240626123714530/datasets/export for details.
DOI: 10.15468/dl.x48wpa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.418909 -32.346775, 148.418909 -32.353512, 148.421155 -32.353512, 148.421155 -32.346775, 148.418909 -32.346775))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063503-240626123714530/datasets/export for details.
DOI: 10.15468/dl.fptrwu
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((143.307471 -37.341432, 143.307471 -37.343678, 143.311962 -37.343678, 143.311962 -37.345924, 143.316454 -37.345924, 143.316454 -37.343678, 143.323191 -37.343678, 143.323191 -37.341432, 143.307471 -37.341432))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063504-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25782471
title: HONO observations and model data at SORPES station, Nanjing during March 24 to 27, 2019

description: Incorporating missing sources of HONO in the air quality model helps to better represent the observed magnitude and temporal variations of HONO.
DOI: 10.6084/m9.figshare.25782471.v1
title: HONO observations and model data during 24 to 27, SORPES

description: Incorporating missing sources of HONO in the air quality model helps to better represent the observed magnitude and temporal variations of HONO.
DOI: 10.15468/dl.73b7t4
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.532826 -32.346775, 149.532826 -32.351267, 149.535071 -32.351267, 149.535071 -32.353512, 149.539563 -32.353512, 149.539563 -32.351267, 149.541809 -32.351267, 149.541809 -32.346775, 149.532826 -32.346775))"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063505-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13106649
title: Experimental moisture content and water saturation and modeled output NAPL-phase saturation
DOI: 10.5281/zenodo.13106650
title: Date of Figures
DOI: 10.5281/zenodo.13193163
title: Experimental and model output data
DOI: 10.5281/zenodo.13308961
title: Experimental moisture content and water saturation and modeled output NAPL-phase saturation
DOI: 10.5281/zenodo.13309020
title: Experimental moisture content and water saturation and modeled output NAPL-phase saturation
DOI: 10.5281/zenodo.13309067
title: Experimental moisture content and water saturation and modeled output NAPL-phase saturation
DOI: 10.15468/dl.bn4snd
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((143.354633 -37.341432, 143.354633 -37.343678, 143.359124 -37.343678, 143.359124 -37.345924, 143.370353 -37.345924, 143.370353 -37.343678, 143.368107 -37.343678, 143.368107 -37.341432, 143.354633 -37.341432))"
 ]
}

 The dataset includes 23 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063506-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gp6fgw
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.541809 -32.358004, 149.541809 -32.36025, 149.5463 -32.36025, 149.5463 -32.358004, 149.541809 -32.358004))"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063507-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13309068
title: CREATIVE ACTIVITY IN PREPARING PRIMARY CLASS TEACHERS TO DIRECT NATIONAL PROFESSIONS
DOI: 10.5281/zenodo.13309069
title: CREATIVE ACTIVITY IN PREPARING PRIMARY CLASS TEACHERS TO DIRECT NATIONAL PROFESSIONS
DOI: 10.15468/dl.n6c3wg
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((143.567984 -37.341432, 143.567984 -37.343678, 143.572475 -37.343678, 143.572475 -37.341432, 143.567984 -37.341432)), ((143.572475 -37.343678, 143.572475 -37.345924, 143.574721 -37.345924, 143.574721 -37.343678, 143.572475 -37.343678)), ((143.574721 -37.343678, 143.576967 -37.343678, 143.576967 -37.341432, 143.574721 -37.341432, 143.574721 -37.343678)), ((143.576967 -37.343678, 143.576967 -37.345924, 143.579213 -37.345924, 143.579213 -37.343678, 143.576967 -37.343678)))"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063508-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ts8w7
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.548546 -32.353512, 149.548546 -32.362496, 149.550792 -32.362496, 149.550792 -32.366987, 149.555284 -32.366987, 149.555284 -32.362496, 149.559775 -32.362496, 149.559775 -32.358004, 149.564267 -32.358004, 149.564267 -32.355758, 149.559775 -32.355758, 149.559775 -32.353512, 149.555284 -32.353512, 149.555284 -32.351267, 149.550792 -32.351267, 149.550792 -32.353512, 149.548546 -32.353512)), ((149.548546 -32.353512, 149.548546 -32.351267, 149.5463 -32.351267, 149.5463 -32.353512, 149.548546 -32.353512)), ((149.550792 -32.351267, 149.550792 -32.346775, 149.548546 -32.346775, 149.548546 -32.351267, 149.550792 -32.351267)))"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063509-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3a9fw
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((142.112706 -37.341432, 142.112706 -37.348169, 142.108214 -37.348169, 142.108214 -37.352661, 142.117197 -37.352661, 142.117197 -37.348169, 142.121689 -37.348169, 142.121689 -37.343678, 142.119443 -37.343678, 142.119443 -37.341432, 142.112706 -37.341432))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063510-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3wekvm
title: Occurrence Download

description: A dataset containing 11077 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Viet Nam",
 {
 "or" : [
 "Geometry POLYGON((75.16657 2.27208,138.83343 2.27208,138.83343 27.72792,75.16657 27.72792,75.16657 2.27208))",
 "Geometry POLYGON((108.23186 11.43464,109.28147 11.4432,109.27226 12.35991,108.23525 12.35681,108.23186 11.43464))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN, VU)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11077 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063511-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13309074
title: O'ZBEKISTONDA ELEKTRON TIJORATNI RIVOJLANTIRISH ISTIQBOLLARI.
DOI: 10.5281/zenodo.13309075
title: O'ZBEKISTONDA ELEKTRON TIJORATNI RIVOJLANTIRISH ISTIQBOLLARI.
DOI: 10.15468/dl.5jx83z
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.488529 -32.355758, 148.488529 -32.358004, 148.484038 -32.358004, 148.484038 -32.362496, 148.488529 -32.362496, 148.488529 -32.366987, 148.490775 -32.366987, 148.490775 -32.369233, 148.497512 -32.369233, 148.497512 -32.355758, 148.488529 -32.355758))"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063512-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n255g4
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((143.386074 -37.341432, 143.386074 -37.343678, 143.381582 -37.343678, 143.381582 -37.350415, 143.379336 -37.350415, 143.379336 -37.352661, 143.38832 -37.352661, 143.38832 -37.359398, 143.392811 -37.359398, 143.392811 -37.352661, 143.390565 -37.352661, 143.390565 -37.345924, 143.392811 -37.345924, 143.392811 -37.343678, 143.390565 -37.343678, 143.390565 -37.341432, 143.386074 -37.341432))"
 ]
}

 The dataset includes 81 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063513-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ykcjh
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Osmanthus armatus Diels"
 ]
}

 The dataset includes 177 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063514-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46uyb7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.971376 -32.358004, 148.971376 -32.362496, 148.973622 -32.362496, 148.973622 -32.36025, 148.975868 -32.36025, 148.975868 -32.358004, 148.971376 -32.358004))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063515-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26549343
title: Additional file 1 of Exploring the acceptability, barriers, and facilitators to psychosis screening in the integrated behavioral health primary care setting: a qualitative study

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26549343.v1
title: Additional file 1 of Exploring the acceptability, barriers, and facilitators to psychosis screening in the integrated behavioral health primary care setting: a qualitative study

description: Supplementary Material 1.
DOI: 10.15468/dl.fcn5x2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((142.119443 -37.352661, 142.119443 -37.357153, 142.123935 -37.357153, 142.123935 -37.354907, 142.121689 -37.354907, 142.121689 -37.352661, 142.119443 -37.352661))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063516-240626123714530/datasets/export for details.
DOI: 10.15468/dl.arphr4
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Viet Nam",
 "OccurrenceStatus is Present",
 "TaxonKey is Turricula Schumacher, 1817"
 ]
}

 The dataset includes 37 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063517-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.