cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.x5dkyh
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dischistocalyx rivularis Bremek."
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036105-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxf3qz
title: Occurrence Download

description: A dataset listing the 64 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Rwanda",
 "TaxonKey is Anura"
 ]
}

 The dataset's 64 records were derived from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067408-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxqnaw
title: Occurrence Download

description: A dataset listing the 4748 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((135.37354 -41.96777,156.42334 -41.96777,156.42334 -27.37793,135.37354 -27.37793,135.37354 -41.96777))",
 "TaxonKey is Actinopterygii"
 ]
}

 The dataset's 4748 records were derived from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0347359-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kycbs
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Agave potatorum Zucc.",
 "Year 2010-2020"
 ]
}

 The dataset includes 137 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082010-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxybfr
title: Occurrence Download

description: A dataset containing 405 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Hemitriccus cinnamomeipectus Fitzpatrick & O'Neill, 1979"
 ]
}

 The dataset includes 405 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036160-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z38wtt
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "GadmGid is MEX.8_1",
 "TaxonKey is Viperidae"
 ]
}

 The dataset includes 102 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146621-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2az8dv
title: Occurrence Download

description: A dataset containing 11143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "Year 1000-2018",
 "DatasetKey is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 11143 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008682-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4zeyj
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Discocalyx amplifolia A.C.Sm."
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036143-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ua8dxz
title: Occurrence Download

description: A dataset containing 12897 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Symplocarpus Salisb. ex W.P.C.Barton"
 ]
}

 The dataset includes 12897 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109708-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.su67vr
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Periclimenes rotumanus Borradaile, 1898"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019289-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10547765
title: InfoHiC models for cancer Hi-C prediction (T47D, 1Mb window, 40kb resolution)

description: InfoHiC models  for cancer Hi-C prediction



T47D

1Mb window

40kb resolution

CSCN encoding
DOI: 10.15468/dl.f992v2
title: Occurrence Download

description: A dataset containing 1193 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Charybdis hellerii (A.Milne-Edwards, 1867)"
 ]
}

 The dataset includes 1193 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019291-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avsjrm
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAO9264"
 ]
}

 The dataset includes 153 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019292-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.r8chd6ju
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (272 records)
DOI: 10.6084/m9.figshare.25845325
title: Raw data

description: Raw numerical data and statistical calculations (An intracellular bacterial pathogen triggers RIG-IMDA5-dependent necroptosis)
DOI: 10.6084/m9.figshare.25845325.v1
title: Raw data

description: Raw numerical data and statistical calculations (An intracellular bacterial pathogen triggers RIG-IMDA5-dependent necroptosis)
DOI: 10.15468/dl.gczkab
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADK1273"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019293-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10544099
title: InfoHiC models for cancer Hi-C prediction

description: InfoHiC models for cancer Hi-C prediction
DOI: 10.5281/zenodo.7559280
title: InfoHiC models for cancer Hi-C prediction

description: InfoHiC models for cancer Hi-C prediction
DOI: 10.15468/dl.y3x2sw
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Charybdis merguiensis (De Man, 1887)"
 ]
}

 The dataset includes 23 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019294-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10547764
title: InfoHiC models for cancer Hi-C prediction (T47D, 1Mb window, 40kb resolution)

description: InfoHiC models  for cancer Hi-C prediction



T47D

1Mb window

40kb resolution

CSCN encoding
DOI: 10.5281/zenodo.11201552
title: InfoHiC models for cancer Hi-C prediction (T47D, 1Mb window, 40kb resolution)

description: InfoHiC models  for cancer Hi-C prediction



T47D

1Mb window

40kb resolution

CSCN encoding
DOI: 10.15468/dl.d9uwgw
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((155.45799 52.432,160.08349 52.432,160.08349 55.61827,155.45799 55.61827,155.45799 52.432))",
 "TaxonKey is Lysichiton camtschatcensis (L.) Schott"
 ]
}

 The dataset includes 82 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019295-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrp54w
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Charybdis vannamei Ward, 1941"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019296-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pc96ud
title: Occurrence Download

description: A dataset containing 57310 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Silene gallica L.)"
 ]
}

 The dataset includes 57310 records from 1048 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019290-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kytbzr
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goniosoma hellerii A.Milne-Edwards, 1867"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019297-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yz256f
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goniosoma merguiense De Man, 1887"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019299-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywkumh
title: Occurrence Download

description: A dataset containing 3596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN)",
 "License is CC-BY 4.0",
 "TaxonKey is Insecta",
 "Year 2003-2024"
 ]
}

 The dataset includes 3596 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019300-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8yhcxy
title: Occurrence Download

description: A dataset containing 2996 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pachygrapsus transversus (Gibbes, 1850)"
 ]
}

 The dataset includes 2996 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019301-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6bb59
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAG9839"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019302-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkerj4
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Metopograpsus miniatus de Saussure, 1857"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019305-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25834906
title: Supplementary Material for: Emphysematous pyelonephritis in a patient on SGLT2 inhibitor therapy – a rare clinical case report

description: Introduction: Emphysematous pyelonephritis is a rare but potentially life-threatening urinary tract infection characterized by the formation of gas in the renal parenchyma, collecting system and perinephric tissue. The condition typically develops in patients with specific predisposing factors such as diabetes mellitus, congenital or acquired obstructive uropathies or individuals taking immunosuppressive agents. Rarely can the disease occur in patients with other predisposing factors, such as the use of SGLT2 inhibitors but this is quite uncommon. The incidence of urinary tract infections associated with their use is still debatable, but cases of emphysematous pyelonephritis associated with SGLT2 inhibitors have been described in medical literature. Case Presentation: We present a rare case of a patient with emphysematous pyelonephritis without classical risk factors for the disease, who was taking an SGLT2 inhibitor. Conclusion: Although the frequency of urinary tract infections following the use of SGLT2 inhibitors is relatively low, their widespread application for treatment of numerous socially significant diseases underscores the necessity for specialists to be aware with all potential risks associated with their use, including the development of severe urinary tract infections.
DOI: 10.15468/dl.qnsmfs
title: Occurrence Download

description: A dataset containing 402553 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Silene latifolia Poir.)"
 ]
}

 The dataset includes 402553 records from 2903 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019298-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q862km
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Grandes peces pelágicos asociados a pesca deportiva marina en Santa Marta, Colombia"
 ]
}

 The dataset includes 124 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017674-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjpndq
title: Occurrence Download

description: A dataset containing 1141 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenaea parvifolia Huber"
 ]
}

 The dataset includes 1141 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017673-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13480920
title: The Pathogen-Host Interactions Database, version 4.14

description: PHI-base is an online database (available at phi-base.org) that catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. PHI-base is a valuable resource in the discovery of genes in medically and agronomically important pathogens, which may be potential targets for chemical intervention.

Each entry in PHI-base is curated by domain experts and is supported by strong experimental evidence (for example, gene disruption and gene complementation experiments), as well as literature references in which the original experiments are described. Each gene in PHI-base is presented with its nucleotide sequence and deduced amino acid sequence (available in a FASTA file), as well as a detailed description of the predicted protein's function during the host infection process. To facilitate data interoperability, we have annotated genes using ontologies, controlled vocabularies, and links to external sources (including UniProt, Gene Ontology, Enzyme Commission, NCBI Taxonomy, EMBL, PubMed and FRAC).

This PHI-base dataset is a Frictionless Data Package that contains an export of the PHI-base database in CSV format (comma-separated values), plus a FASTA file with sequences for each gene in the database. This version of the dataset, version 4.14, contains information from 4,847 publications, covering 19,881 pathogen–host interactions and 8,993 pathogen genes across 283 pathogen species and 234 host species.
DOI: 10.5281/zenodo.13484596
title: The Pathogen-Host Interactions Database, version 4.16

description: PHI-base is an online database (available at phi-base.org) that catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. PHI-base is a valuable resource in the discovery of genes in medically and agronomically important pathogens, which may be potential targets for chemical intervention.

Each entry in PHI-base is curated by domain experts and is supported by strong experimental evidence (for example, gene disruption and gene complementation experiments), as well as literature references in which the original experiments are described. Each gene in PHI-base is presented with its nucleotide sequence and deduced amino acid sequence (available in a FASTA file), as well as a detailed description of the predicted protein's function during the host infection process. To facilitate data interoperability, we have annotated genes using ontologies, controlled vocabularies, and links to external sources (including UniProt, Gene Ontology, Enzyme Commission, NCBI Taxonomy, EMBL, PubMed and FRAC).

This PHI-base dataset is a Frictionless Data Package that contains an export of the PHI-base database in CSV format (comma-separated values), plus a FASTA file with sequences for each gene in the database. This version of the dataset, version 4.16, contains 5,301 publications, covering 21,676 pathogen–host interactions and 9,666 pathogen genes across 294 pathogen species and 244 host species.

Erratum

Please note that the funding information included in the readme file for this dataset (specifically README.md and README.html) is incorrect. The correct funding sources are Growing Health [BB/X010953/1; BBS/E/RH/230003A] and Delivering Sustainable Wheat [BB/X011003/1; BBS/E/RH/230001B], both ultimately funded by the Biotechnology and Biological Sciences Research Council (BBSRC). The metadata for this dataset has been amended to use the correct funding sources (updated 16 September 2024).
DOI: 10.5281/zenodo.12800133
title: The Pathogen-Host Interactions Database, version 4.13

description: PHI-base is an online database (available at phi-base.org) that catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. PHI-base is a valuable resource in the discovery of genes in medically and agronomically important pathogens, which may be potential targets for chemical intervention.

Each entry in PHI-base is curated by domain experts and is supported by strong experimental evidence (for example, gene disruption and gene complementation experiments), as well as literature references in which the original experiments are described. Each gene in PHI-base is presented with its nucleotide sequence and deduced amino acid sequence (available in a FASTA file), as well as a detailed description of the predicted protein's function during the host infection process. To facilitate data interoperability, we have annotated genes using ontologies, controlled vocabularies, and links to external sources (including UniProt, Gene Ontology, Enzyme Commission, NCBI Taxonomy, EMBL, PubMed and FRAC).

This PHI-base dataset is a Frictionless Data Package that contains an export of the PHI-base database in CSV format (comma-separated values), plus a FASTA file with sequences for each gene in the database. This version of the dataset, version 4.13, contains information from 4,611 publications, covering 18,982 pathogen–host interactions and 8,708 pathogen genes across 282 pathogen species and 233 host species.
DOI: 10.5281/zenodo.13483233
title: The Pathogen-Host Interactions Database, version 4.15

description: PHI-base is an online database (available at phi-base.org) that catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. PHI-base is a valuable resource in the discovery of genes in medically and agronomically important pathogens, which may be potential targets for chemical intervention.

Each entry in PHI-base is curated by domain experts and is supported by strong experimental evidence (for example, gene disruption and gene complementation experiments), as well as literature references in which the original experiments are described. Each gene in PHI-base is presented with its nucleotide sequence and deduced amino acid sequence (available in a FASTA file), as well as a detailed description of the predicted protein's function during the host infection process. To facilitate data interoperability, we have annotated genes using ontologies, controlled vocabularies, and links to external sources (including UniProt, Gene Ontology, Enzyme Commission, NCBI Taxonomy, EMBL, PubMed and FRAC).

This PHI-base dataset is a Frictionless Data Package that contains an export of the PHI-base database in CSV format (comma-separated values), plus a FASTA file with sequences for each gene in the database. This version of the dataset, version 4.15, contains 5,084 publications, covering 20,950 pathogen–host interactions and 9,377 pathogen genes across 285 pathogen species and 236 host species.