cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4165653
title: force from Stability in skipping gaits

description: Alternative to walking and running humans are able to skip. However, adult humans avoid it. This fact seems to be related to the higher energetic costs associated with skipping. Still, children, some birds, lemurs and lizards use skipping gaits during daily locomotion. We combined experimental data on humans with numerical simulations to test whether stability and robustness motivate this choice. Parameters for modelling were obtained from 10 male subjects. They locomoted using unilateral skipping along a 12 m runway. We used the bipedal spring loaded inverted pendulum to model and to describe the dynamics of skipping. The subjects displayed higher peak ground reaction forces and leg stiffness in the first landing leg (trailing leg) compared to the second landing leg (leading leg). In numerical simulations, we found that skipping is stable across an amazing speed range from skipping on the spot to fast running speeds. Higher leg stiffness in the trailing leg permits longer strides at same system energy. However, this strategy is at the same time less robust to sudden drop perturbations than skipping with stiffness in the leading leg. A slightly higher stiffness in the leading leg is most robust, but might be costlier.
DOI: 10.6084/m9.figshare.4165653.v1
title: force from Stability in skipping gaits

description: Alternative to walking and running humans are able to skip. However, adult humans avoid it. This fact seems to be related to the higher energetic costs associated with skipping. Still, children, some birds, lemurs and lizards use skipping gaits during daily locomotion. We combined experimental data on humans with numerical simulations to test whether stability and robustness motivate this choice. Parameters for modelling were obtained from 10 male subjects. They locomoted using unilateral skipping along a 12 m runway. We used the bipedal spring loaded inverted pendulum to model and to describe the dynamics of skipping. The subjects displayed higher peak ground reaction forces and leg stiffness in the first landing leg (trailing leg) compared to the second landing leg (leading leg). In numerical simulations, we found that skipping is stable across an amazing speed range from skipping on the spot to fast running speeds. Higher leg stiffness in the trailing leg permits longer strides at same system energy. However, this strategy is at the same time less robust to sudden drop perturbations than skipping with stiffness in the leading leg. A slightly higher stiffness in the leading leg is most robust, but might be costlier.
DOI: 10.6084/m9.figshare.4165659.v1
title: Persistence to Anti-Cancer Treatments in the Stationary to Proliferating Transition

description: The heterogeneous responses of clonal cancer cells to treatment is understood to be caused by several factors, including stochasticity, cell-cycle dynamics, and different micro-environments. In a tumor, cancer cells may encounter fluctuating conditions and transit from a stationary culture to a proliferating state, for example this may occur following treatment. Here, we undertake a quantitative evaluation of the response of single cancerous lymphoblasts (L1210 cells) to various treatments administered during this transition. Additionally, we developed an experimental system, a “Mammalian Mother Machine”, that tracks the fate of thousands of mammalian cells over several generations under transient exposure to chemotherapeutic drugs. Using our developed system, we were able to follow the same cell under repeated treatments and continuously track many generations. We found that the dynamics of the transition between stationary and proliferative states are highly variable and affect the response to drug treatment. Using cell-cycle markers, we were able to isolate a subpopulation of persister cells with distinctly higher than average survival probability. The higher survival rate encountered with cell-cycle phase specific drugs was associated with a significantly longer time-till-division, and was reduced by a non cell-cycle specific drug. Our results suggest that the variability of transition times from the stationary to the proliferating state may be an obstacle hampering the effectiveness of drugs and should be taken into account when designing treatment regimens.
DOI: 10.7910/dvn/v1rjpf/t7xgzj
title: cbb20160807_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4165647
title: FixSkipping_All from Stability in skipping gaits

description: Alternative to walking and running humans are able to skip. However, adult humans avoid it. This fact seems to be related to the higher energetic costs associated with skipping. Still, children, some birds, lemurs and lizards use skipping gaits during daily locomotion. We combined experimental data on humans with numerical simulations to test whether stability and robustness motivate this choice. Parameters for modelling were obtained from 10 male subjects. They locomoted using unilateral skipping along a 12 m runway. We used the bipedal spring loaded inverted pendulum to model and to describe the dynamics of skipping. The subjects displayed higher peak ground reaction forces and leg stiffness in the first landing leg (trailing leg) compared to the second landing leg (leading leg). In numerical simulations, we found that skipping is stable across an amazing speed range from skipping on the spot to fast running speeds. Higher leg stiffness in the trailing leg permits longer strides at same system energy. However, this strategy is at the same time less robust to sudden drop perturbations than skipping with stiffness in the leading leg. A slightly higher stiffness in the leading leg is most robust, but might be costlier.
DOI: 10.6084/m9.figshare.4165647.v1
title: FixSkipping_All from Stability in skipping gaits

description: Alternative to walking and running humans are able to skip. However, adult humans avoid it. This fact seems to be related to the higher energetic costs associated with skipping. Still, children, some birds, lemurs and lizards use skipping gaits during daily locomotion. We combined experimental data on humans with numerical simulations to test whether stability and robustness motivate this choice. Parameters for modelling were obtained from 10 male subjects. They locomoted using unilateral skipping along a 12 m runway. We used the bipedal spring loaded inverted pendulum to model and to describe the dynamics of skipping. The subjects displayed higher peak ground reaction forces and leg stiffness in the first landing leg (trailing leg) compared to the second landing leg (leading leg). In numerical simulations, we found that skipping is stable across an amazing speed range from skipping on the spot to fast running speeds. Higher leg stiffness in the trailing leg permits longer strides at same system energy. However, this strategy is at the same time less robust to sudden drop perturbations than skipping with stiffness in the leading leg. A slightly higher stiffness in the leading leg is most robust, but might be costlier.
DOI: 10.6084/m9.figshare.4165650
title: kine from Stability in skipping gaits

description: Alternative to walking and running humans are able to skip. However, adult humans avoid it. This fact seems to be related to the higher energetic costs associated with skipping. Still, children, some birds, lemurs and lizards use skipping gaits during daily locomotion. We combined experimental data on humans with numerical simulations to test whether stability and robustness motivate this choice. Parameters for modelling were obtained from 10 male subjects. They locomoted using unilateral skipping along a 12 m runway. We used the bipedal spring loaded inverted pendulum to model and to describe the dynamics of skipping. The subjects displayed higher peak ground reaction forces and leg stiffness in the first landing leg (trailing leg) compared to the second landing leg (leading leg). In numerical simulations, we found that skipping is stable across an amazing speed range from skipping on the spot to fast running speeds. Higher leg stiffness in the trailing leg permits longer strides at same system energy. However, this strategy is at the same time less robust to sudden drop perturbations than skipping with stiffness in the leading leg. A slightly higher stiffness in the leading leg is most robust, but might be costlier.
DOI: 10.7910/dvn/v1rjpf/bkjutn
title: cbb20160817_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4165650.v1
title: kine from Stability in skipping gaits

description: Alternative to walking and running humans are able to skip. However, adult humans avoid it. This fact seems to be related to the higher energetic costs associated with skipping. Still, children, some birds, lemurs and lizards use skipping gaits during daily locomotion. We combined experimental data on humans with numerical simulations to test whether stability and robustness motivate this choice. Parameters for modelling were obtained from 10 male subjects. They locomoted using unilateral skipping along a 12 m runway. We used the bipedal spring loaded inverted pendulum to model and to describe the dynamics of skipping. The subjects displayed higher peak ground reaction forces and leg stiffness in the first landing leg (trailing leg) compared to the second landing leg (leading leg). In numerical simulations, we found that skipping is stable across an amazing speed range from skipping on the spot to fast running speeds. Higher leg stiffness in the trailing leg permits longer strides at same system energy. However, this strategy is at the same time less robust to sudden drop perturbations than skipping with stiffness in the leading leg. A slightly higher stiffness in the leading leg is most robust, but might be costlier.
DOI: 10.7910/dvn/v1rjpf/hac7mk
title: cbb20160818_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/ldvgo2
title: cbb20160502_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4165521
title: Understanding workers' exposure: Systematic review and data-analysis of emission potential for NOAA

description: Exposure assessment for nano-objects, and their aggregates and agglomerates (NOAA), has evolved from explorative research toward more comprehensive exposure assessment, providing data to further develop currently used conservative control banding (CB) tools for risk assessment. This study aims to provide an overview of current knowledge on emission potential of NOAA across the occupational life cycle stages by a systematic review and subsequently use the results in a data analysis. Relevant parameters that influence emission were collected from peer-reviewed literature with a focus on the four source domains (SD) in the source-receptor conceptual framework for NOAA. To make the reviewed exposure data comparable, we applied an approach to normalize for workplace circumstances and measurement location, resulting in comparable “surrogate” emission levels. Finally, descriptive statistics were performed. During the synthesis of nanoparticles (SD1), mechanical reduction and gas phase synthesis resulted in the highest emission compared to wet chemistry and chemical vapor condensation. For the handling and transfer of bulk manufactured nanomaterial powders (SD2) the emission could be differentiated for five activity classes: (1) harvesting; (2) dumping; (3); mixing; (4) cleaning of a reactor; and (5) transferring. Additionally, SD2 was subdivided by the handled amount with cleaning further subdivided by energy level. Harvesting and dumping resulted in the highest emissions. Regarding processes with liquids (SD3b), it was possible to distinguish emissions for spraying (propellant gas, (high) pressure and pump), sonication and brushing/rolling. The highest emissions observed in SD3b were for propellant gas spraying and pressure spraying. The highest emissions for the handling of nano-articles (SD4) were found to nano-sized particles (including NOAA) for grinding. This study provides a valuable overview of emission assessments performed in the workplace during the occupational handling of NOAA. Analyses were made per source domain to derive emission levels which can be used for models to quantitatively predict the exposure.
DOI: 10.5517/ccdc.csd.cc27q4x1
title: CCDC 2076873: Experimental Crystal Structure Determination

description: Related Article: Christiana Bamigboye, Hanna S. Abbo, Huey Chong Kwong, Sang Loon Tan, Edward R.T. Tiekink, Fadhil S. Kamounah, Salam J.J. Titinchi|2021|Z.Krist.Cryst.Mater.|236|187|doi:10.1515/zkri-2021-2024
DOI: 10.5517/ccdc.csd.cc27rxdb
title: CCDC 2078562: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxfc
title: CCDC 2078563: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxgd
title: CCDC 2078564: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxjg
title: CCDC 2078566: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxkh
title: CCDC 2078567: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxlj
title: CCDC 2078568: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.6084/m9.figshare.12174273
title: Barriers to ART adherence among women in rural Eswatini

description: This data was collected for a mixed methods study investigating barriers to ART adherence among rural women in Eswatini. PDFs contain qualitative data collected from focus group discussions and key informants. Excel file contains quantitative data from survey interviews.<br>
DOI: 10.5517/ccdc.csd.cc27rxmk
title: CCDC 2078569: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxnl
title: CCDC 2078570: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxpm
title: CCDC 2078571: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxqn
title: CCDC 2078572: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxrp
title: CCDC 2078573: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxsq
title: CCDC 2078574: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.6084/m9.figshare.12174273.v1
title: Barriers to ART adherence among women in rural Eswatini

description: This data was collected for a mixed methods study investigating barriers to ART adherence among rural women in Eswatini. PDFs contain qualitative data collected from focus group discussions and key informants. Excel file contains quantitative data from survey interviews.<br>
DOI: 10.5517/ccdc.csd.cc27rxtr
title: CCDC 2078575: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxvs
title: CCDC 2078576: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, V.I. Rozenberg|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rtqk
title: CCDC 2078479: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, Z.B. Shifrina|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rtrl
title: CCDC 2078480: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, N.Ya.Turova|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rtsm
title: CCDC 2078481: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, N.Ya.Turova|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rttn
title: CCDC 2078482: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, A.V.Usatov|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxzx
title: CCDC 2078580: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, Z.V.Zhilina|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rwc8
title: CCDC 2078530: Experimental Crystal Structure Determination

description: Related Article: T. S. Sukhikh, E. Kh. Sadykov, A. V. Artemiev|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27rxb8
title: CCDC 2078560: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27ryhg
title: CCDC 2078596: Experimental Crystal Structure Determination

description: Related Article: Z.A.Starikova, N.M.Loim|2021|CSD Communication|||
DOI: 10.6073/pasta/49f89077eb5f89aff41e62f5e3a12d1e
title: LiDAR-estimated Marsh Edge Morphology on the Coast of Virginia 2015

description: Retreat metrics were analyzed between 2002 and 2015, utilizing a LiDAR derived edge for the year 2015 from points of maximum slope and aerial imagery pre-2015. We examined this within the context of oyster reef restoration within the shallow coastal bays of Virginia, USA by comparing retreat and morphology quantified at paired reef-lined and control marsh edges at ten different marsh sites. A table of statistics summarizes analyses of the 10 sites. Additionally, specific locations of the sites and the estimated digitized shorelines from LiDAR, from which maximum slope derived edges and buffer areas were created for analysis, are provided in a geodatabase and as individual site shapefiles. Finally a document describing the details of the GIS analysis is provided.
DOI: 10.5281/zenodo.5164015
title: Data for 3 Swarm-E Fast Auroral Imager Passes Observing the ICEBEAR Radar Field of View

description: Files containing data for 3 Swarm-E satellite passes observing the Ionospheric Continuous-wave E-region Bistatic Experimental Auroral Radar (ICEBEAR) field of view during semi-active geomagnetic conditions using the Fast Auroral Imager. The dates and times of the passes are: 2018-03-10 05:21:00-05:26:00 UT<br> 2019-10-27 04:03:00-04:13:00 UT<br> 2020-03-19 09:00:00-09:04:00 UT
DOI: 10.5281/zenodo.5164014
title: Data for 3 Swarm-E Fast Auroral Imager Passes Observing the ICEBEAR Radar Field of View

description: Files containing data for 3 Swarm-E satellite passes observing the Ionospheric Continuous-wave E-region Bistatic Experimental Auroral Radar (ICEBEAR) field of view during semi-active geomagnetic conditions using the Fast Auroral Imager. The dates and times of the passes are: 2018-03-10 05:21:00-05:26:00 UT<br> 2019-10-27 04:03:00-04:13:00 UT<br> 2020-03-19 09:00:00-09:04:00 UT
DOI: 10.6084/m9.figshare.15106233.v1
title: Nature needs half: Climate change will make it difficult to identify which half - Data

description: This zip file contains a shapefile of the expanded protected area network used in the analysis for the manuscript titled Nature needs half: Climate Change will make it difficult to identify which half published in Communications Earth & Environment<br><br>The file also includes a summary table of ecoregion results from the manuscript analysis.<br>
DOI: 10.6084/m9.figshare.15109422.v4
title: Additional Supplemental Data

description: Here, we provide:<br>Robjects pertaining to scRNA-seq (Seurat) and snATAC-seq (Signac) analysis. These contain the single-cell and single-nuclei used in downstream analyses. <br>Tables containing information about the gene markers identified for each cluster in scRNA-seq, peak markers identified for each cluster in snATAC-seq, and motif enrichment analyses using chromVAR motif scores. <br>Differential gene expression and motif enrichment analyses was performed using Wilcoxon rank sum test comparing the distribution of gene expression or chromVAR motif scores between cells in the cluster and all other cells. <br>Differential peak analyses was performed using FindAllMarkers in Signac. <br><br>
DOI: 10.18430/m37rcr
title: X-ray diffraction data for the crystal Structure of the refolded Hemagglutinin head domain of Influenza A virus A/Ohio/09/2015 (7RCR)
DOI: 10.6084/m9.figshare.15109422.v5
title: Additional Supplemental Data

description: Here, we provide:<br>Robjects pertaining to scRNA-seq (Seurat) and snATAC-seq (Signac) analysis. These contain the single-cell and single-nuclei used in downstream analyses. <br>Tables containing information about the gene markers identified for each cluster in scRNA-seq, peak markers identified for each cluster in snATAC-seq, and motif enrichment analyses using chromVAR motif scores. <br>Differential gene expression and motif enrichment analyses was performed using Wilcoxon rank sum test comparing the distribution of gene expression or chromVAR motif scores between cells in the cluster and all other cells. <br>Differential peak analyses was performed using FindAllMarkers in Signac. <br><br>
DOI: 10.5281/zenodo.5164210
title: Supplementary Dataset for Deep learning based kcat prediction enables improved enzyme constrained model reconstruction

description: This dataset is the supplementary dataset for the paper "<strong>Deep learning based <em>k</em><sub>cat</sub> prediction enables improved enzyme constrained model reconstruction</strong>". Protein sequence fasta files, deep learning predicted <em>k</em><sub>cat</sub> values, classcial-ecGEMs, DL-ecGEMs and <em>Posterior</em>-mean-ecGEMs for 343 yeast/fungi species are available in this dataset.This repository also contains the computed results for reproducing the figures as model_build_files . The scripts can be found in Github (https://github.com/SysBioChalmers/DLKcat)
DOI: 10.5281/zenodo.5164233
title: Roof_type

description: roof_type dataset
DOI: 10.25625/o01vgg/yf95yv
title: Ace_PhOH_crest20_madef2-TZVP.xyz

description: Acetophenone+PhOH phenyl sided structure
DOI: 10.25625/o01vgg/py06pb
title: 2BrAce_PhOH_oben_CH3_h_421.xyz

description: 2Br-Acetophenone+PhOH methyl sided structure
DOI: 10.25625/o01vgg/vxxp56
title: Ace_PhOH_crest14_madef2-TZVP.xyz

description: Acetophenone+PhOH methyl sided structure
DOI: 10.25625/o01vgg/m4gu2q
title: 2BrAce_PhOH_oben_hinten_h_421.xyz

description: 2Br-Acetophenone+PhOH phenyl sided structure
DOI: 10.25625/o01vgg/ofgxi4
title: Ace_PhOH_crest14.xyz

description: Acetophenone+PhOH methyl sided structure
DOI: 10.25625/o01vgg/nfebhz
title: 2ClAce+PhOH_crest1.xyz

description: 2Cl-Acetophenone+PhOH phenyl sided structure
DOI: 10.25625/o01vgg/uv3dql
title: Ace_PhOH_crest20.xyz

description: Acetophenone+PhOH phenyl sided structure
DOI: 10.25625/o01vgg/12ntcc
title: 2ClAce+PhOH_crest23.xyz

description: 2Cl-Acetophenone+PhOH methyl sided structure
DOI: 10.25625/o01vgg/bwlakf
title: 4BrAce+PhOH_crest2.xyz

description: 4Br-Acetophenone+PhOH phenyl sided structure
DOI: 10.25625/o01vgg/os2n47
title: 4BrAce+PhOH_crest11.xyz

description: 4Br-Acetophenone+PhOH methyl sided structure
DOI: 10.25625/o01vgg/mfnbwj
title: 4ClAce+PhOH_crest1.xyz

description: 4Cl-Acetophenone+PhOH phenyl sided structure
DOI: 10.25625/o01vgg/qqlt1p
title: 4ClAce+PhOH_crest8.xyz

description: 4Cl-Acetophenone+PhOH methyl sided structure
DOI: 10.25625/o01vgg/4ika6z
title: 4FAce+PhOH_crest1.xyz

description: 4F-Acetophenone+PhOH phenyl sided structure (more pi-pi stacking)
DOI: 10.25625/o01vgg/kfw3p3
title: 4FAce+PhOH_crest5.xyz

description: 4F-Acetophenone+PhOH methyl sided structure
DOI: 10.25625/o01vgg/rpedjy
title: 4FAce+PhOH_crest27.xyz

description: 4F-Acetophenone+PhOH next phenyl sided structure (less pi-pi stacking)