cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57760/sciencedb.37100
title: Transcriptomic Analysis of Exogenous Sulfopeptide-Regulated Tillering in Zizania latifolia
title: Transcriptomic Analysis of Exogenous Sulfopeptide-Regulated Tillering in Zizania latifolia

description: Leaves of Zizania latifolia were treated with phytosulfokine (PSK) and transcriptome sequencing (BioProject accession: PRJNA1377146) was performed to investigate gene expression profiles. The results demonstrated that exogenous PSK positively regulated the growth and development of Zizania latifolia. KEGG and GO pathway analyses revealed that PSK treatment significantly affected the phenylpropanoid biosynthesis and fatty acid degradation pathways, and modulated metabolic development of Zizania latifolia mainly by influencing lignin biosynthesis and peroxisomal reactions.
description: Leaves of Zizania latifolia were treated with phytosulfokine (PSK) and transcriptome sequencing (BioProject accession: PRJNA1377146) was performed to investigate gene expression profiles. The results demonstrated that exogenous PSK positively regulated the growth and development of Zizania latifolia. KEGG and GO pathway analyses revealed that PSK treatment significantly affected the phenylpropanoid biosynthesis and fatty acid degradation pathways, and modulated metabolic development of Zizania latifolia mainly by influencing lignin biosynthesis and peroxisomal reactions.
DOI: 10.15468/dl.px7tb4
title: Occurrence Download

description: A dataset containing 788702 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Strangomera",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 788702 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015583-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4zs99h
title: Occurrence Download

description: A dataset containing 73532 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Holcus lanatus)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 73532 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015589-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdqw3q
title: Occurrence Download

description: A dataset containing 254 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((111.357 21.461,115.422 21.461,115.422 24.392,111.357 24.392,111.357 21.461))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ptyas mucosa"
 ]
}

 The dataset includes 254 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015608-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sf2668
title: Occurrence Download

description: A dataset containing 16226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Holcus mollis)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 16226 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015610-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5063/f1v69h2s
title: Surface and bottom temperature during monthly campaigns at floodplain lake Janauacá (central Amazon) from Nov-2014 to Sep-2016

description: This dataset includes near-surface (0.02 m) and near-bottom temperature measurements from Lake Janauacá, a central Amazon floodplain lake in Brazil. Data were collected during monthly campaigns between late November 2014 and early September 2016 in both the main lake and an adjoining embayment. Measurements were taken in three habitats—open water, floating plants, and flooded forests—using RBR solo thermistors (accuracy: 0.002 °C). Each netCDF file corresponds to one habitat in either the main lake or embayment and contains Julian time, surface temperature, and bottom temperature, as indicated in the file name.
DOI: 10.15468/dl.wwd4ub
title: Occurrence Download

description: A dataset containing 175454 records in GBIF matching the query:

 SELECT gbifid, datasetkey, specieskey, scientificname, decimallatitude, decimallongitude, eventdate, "year" AS obs_year, basisofrecord, coordinateuncertaintyinmeters, issue
 FROM occurrence
 WHERE
 decimallatitude IS NOT NULL
 AND decimallongitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND coordinateuncertaintyinmeters IS NOT NULL
 AND coordinateuncertaintyinmeters &gt; 0
 AND coordinateuncertaintyinmeters &lt;= 200.0
 AND decimallatitude &gt;= -33.06103686093294
 AND decimallatitude &lt;= -28.773895969281842
 AND decimallongitude &gt;= 129.91202131430416
 AND decimallongitude &lt;= 139.1529135841863
 AND GBIF_Within('POLYGON ((139.152914 -33.061037, 139.152914 -28.773896, 129.912021 -28.773896, 129.912021 -33.061037, 139.152914 -33.061037))', decimallatitude, decimallongitude) = TRUE
 

 The dataset's 175454 records were derived from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015418-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18501325
title: طیف انرژی و نمودار فازی در چارچوب دینامیک دافعه حجمی پیوسته

description: در این سند، برای نخستین بار طیف انرژی در چارچوب نظریٔه دینامیک دافعه حجمی پیوسته ،به صورت فازی و هندسی تعریف میشود. در این رویکرد، انرژی نه به‌عنوان کمیت عددی، بلکه به‌عنوان فاز زمانی– ِ حجمی تولید حجم جدید در کیهان تفسیر میگردد. همچنین نمودار فازی  معرفی میشود که رژیمهای مختلف انرژی، تابش، ماده و مادٔه تاریک را در یک چارچوب واحد و پیوسته سامان میدهد
DOI: 10.5281/zenodo.18501324
title: طیف انرژی و نمودار فازی در چارچوب دینامیک دافعه حجمی پیوسته

description: در این سند، برای نخستین بار طیف انرژی در چارچوب نظریٔه دینامیک دافعه حجمی پیوسته ،به صورت فازی و هندسی تعریف میشود. در این رویکرد، انرژی نه به‌عنوان کمیت عددی، بلکه به‌عنوان فاز زمانی– ِ حجمی تولید حجم جدید در کیهان تفسیر میگردد. همچنین نمودار فازی  معرفی میشود که رژیمهای مختلف انرژی، تابش، ماده و مادٔه تاریک را در یک چارچوب واحد و پیوسته سامان میدهد
DOI: 10.15468/dl.rnruvr
title: Occurrence Download

description: A dataset containing 2376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Holosteum umbellatum)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 2376 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015612-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qudx2
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bathyraja scaphiops"
 ]
}

 The dataset includes 196 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015615-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apen46
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Styloceras columnare"
 ]
}

 The dataset includes 99 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015614-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ta8czp
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.2_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Spizixos semitorques",
 "Year is 2022"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015616-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqemdy
title: Occurrence Download

description: A dataset containing 17002 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Homogyne alpina)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 17002 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015617-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30964372
title: A novel naturally ORF3a-Deficient Porcine Transmissible Gastroenteritis Virus Field Strain HN-2012: Isolation, Pathogenicity and Reverse Genetics System Development

description: Transmissible gastroenteritis virus (TGEV) is an enteric coronavirus causing severe diarrhea with high mortality in suckling piglets. In this study, a field TGEV strain, designated HN-2012, was isolated from the intestinal contents of diarrheic piglets in Henan Province, China. Genomic analysis identified a continuous 140-nucleotide deletion in HN-2012 resulting in the lack of the accessory protein 3a (ORF3a) compared with other TGEV Miller strains. Experimental infection of piglets with TGEV HN-2012 induced severe diarrhea and lung injury. Simultaneously, high viral loads were detected in both the small intestines and lung tissues, demonstrating that TGEV HN-2012 exhibits dual tropism for enteric and respiratory epithelia. Furthermore, a full-length cDNA infectious clone of TGEV HN-2012 was constructed using a yeast artificial chromosome system via transformation-associated recombination. The recombinant virus was successfully rescued and exhibited similar replication kinetics comparable to the parental virus. In summary, we isolated a novel, naturally TGEV ORF3a deletion strain associated with severe enteric disease and lung injury in piglets, and establishes an efficient reverse genetic system of TGEV. This work providing a valuable tool for investigating the TGEV evolutionary and pathogenesis mechanisms.
DOI: 10.6084/m9.figshare.30964372.v4
title: A novel naturally ORF3a-Deficient Porcine Transmissible Gastroenteritis Virus Field Strain HN-2012: Isolation, Pathogenicity and Reverse Genetics System Development

description: Transmissible gastroenteritis virus (TGEV) is an enteric coronavirus causing severe diarrhea with high mortality in suckling piglets. In this study, a field TGEV strain, designated HN-2012, was isolated from the intestinal contents of diarrheic piglets in Henan Province, China. Genomic analysis identified a continuous 140-nucleotide deletion in HN-2012 resulting in the lack of the accessory protein 3a (ORF3a) compared with other TGEV Miller strains. Experimental infection of piglets with TGEV HN-2012 induced severe diarrhea and lung injury. Simultaneously, high viral loads were detected in both the small intestines and lung tissues, demonstrating that TGEV HN-2012 exhibits dual tropism for enteric and respiratory epithelia. Furthermore, a full-length cDNA infectious clone of TGEV HN-2012 was constructed using a yeast artificial chromosome system via transformation-associated recombination. The recombinant virus was successfully rescued and exhibited similar replication kinetics comparable to the parental virus. In summary, we isolated a novel, naturally TGEV ORF3a deletion strain associated with severe enteric disease and lung injury in piglets, and establishes an efficient reverse genetic system of TGEV. This work providing a valuable tool for investigating the TGEV evolutionary and pathogenesis mechanisms.
DOI: 10.6084/m9.figshare.30964372.v5
title: A novel naturally ORF3a-Deficient Porcine Transmissible Gastroenteritis Virus Field Strain HN-2012: Isolation, Pathogenicity and Reverse Genetics System Development

description: Transmissible gastroenteritis virus (TGEV) is an enteric coronavirus causing severe diarrhea with high mortality in suckling piglets. In this study, a field TGEV strain, designated HN-2012, was isolated from the intestinal contents of diarrheic piglets in Henan Province, China. Genomic analysis identified a continuous 140-nucleotide deletion in HN-2012 resulting in the lack of the accessory protein 3a (ORF3a) compared with other TGEV Miller strains. Experimental infection of piglets with TGEV HN-2012 induced severe diarrhea and lung injury. Simultaneously, high viral loads were detected in both the small intestines and lung tissues, demonstrating that TGEV HN-2012 exhibits dual tropism for enteric and respiratory epithelia. Furthermore, a full-length cDNA infectious clone of TGEV HN-2012 was constructed using a yeast artificial chromosome system via transformation-associated recombination. The recombinant virus was successfully rescued and exhibited similar replication kinetics comparable to the parental virus. In summary, we isolated a novel, naturally TGEV ORF3a deletion strain associated with severe enteric disease and lung injury in piglets, and establishes an efficient reverse genetic system of TGEV. This work providing a valuable tool for investigating the TGEV evolutionary and pathogenesis mechanisms.
DOI: 10.15468/dl.2epghs
title: Occurrence Download

description: A dataset containing 3642 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hornungia alpina, Pritzelago alpina, Hutchinsia alpina, Hutchinsia alpina)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 3642 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015619-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7k8f9c
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Trichoderma bombaxalis sp. nov., isolated from rhizosphere soils of Lycium barbarum"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015620-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31272847
title: <i>E. bruneus</i> genome and gene annotation

description: Here we assemble a high-quality chromosome-level genome of <i>E. bruneus </i>by an integration of Nanopore, Illumina, and high-throughput chromosome conformation capture (Hi-C) sequencing technologies.
DOI: 10.6084/m9.figshare.31272847.v1
title: <i>E. bruneus</i> genome and gene annotation

description: Here we assemble a high-quality chromosome-level genome of <i>E. bruneus </i>by an integration of Nanopore, Illumina, and high-throughput chromosome conformation capture (Hi-C) sequencing technologies.
DOI: 10.5281/zenodo.18501299
title: Dataset figures for the full sample of "Classification of blazar candidates of uncertain type and estimation of Doppler factors"

description: This dataset contains the figures for the entire sample presented in theA&A paper "Classification of Blazar Candidates of Uncertain Type and Estimation of Doppler Factors".
DOI: 10.5281/zenodo.18501298
title: Dataset figures for the full sample of "Classification of blazar candidates of uncertain type and estimation of Doppler factors"

description: This dataset contains the figures for the entire sample presented in theA&A paper "Classification of Blazar Candidates of Uncertain Type and Estimation of Doppler Factors".
DOI: 10.15468/dl.n9tvvv
title: Occurrence Download

description: A dataset containing 10728 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hylotelephium maximum, Hylotelephium telephium, Hylotelephium vulgare, Hylotelephium jullianum, Sedum telephium, Sedum telephium, Sedum telephium, Sedum maximum, Sedum maximum, Sedum purpureum, Sedum purpureum, Sedum purpurascens, Sedum fabaria, Sedum fabaria)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 10728 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015621-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vy8n3g
title: Occurrence Download

description: A dataset containing 9273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Occurrence evidence)",
 "TaxonKey is Bactrocera dorsalis"
 ]
}

 The dataset includes 9273 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015624-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31272826
title: AlphaFold-predicted structures of the wild-type protein and the N192D mutant

description: This dataset contains AlphaFold-predicted three-dimensional structures of the wild-type protein and the N192D mutant used in this study. The structural models were generated by the authors using AlphaFold and were used for structural analysis and visualization.The files are provided in PDB format and are intended to support reproducibility and reuse of the structural data associated with the related manuscript.<br>
DOI: 10.6084/m9.figshare.31272826.v1
title: AlphaFold-predicted structures of the wild-type protein and the N192D mutant

description: This dataset contains AlphaFold-predicted three-dimensional structures of the wild-type protein and the N192D mutant used in this study. The structural models were generated by the authors using AlphaFold and were used for structural analysis and visualization.The files are provided in PDB format and are intended to support reproducibility and reuse of the structural data associated with the related manuscript.<br>
DOI: 10.20350/digitalcsic/17951
title: Raw data behind tables and figures- Metabolomic analysis hydroxytyrosol intervention in individuals with prediabetes and overweight [Dataset]

description: The data in this dataset originate from a randomized, double-blind, parallel, placebo-controlled nutritional intervention study. The two intervention groups consisted of a group receiving hydroxytyrosol (HT, 15 mg/day) and a placebo group (P) for a period of 16 weeks. Serum samples from the participants were analyzed by LC-MS in an untargeted metabolomics approach. The collected data represent log2 fold changes (post/pre) between the baseline visit (pre-intervention) and the final visit (post-intervention). Univariate analyses were performed to identify significantly altered metabolites, and multivariate analyses were conducted to determine the metabolites that best contributed to the separation model between the two groups. In addition, baseline characteristics including age, sex, weight, body mass index, fasting glucose, and glycated hemoglobin were recorded to verify that both groups were comparable before and after the intervention.
DOI: 10.15468/dl.sktpnd
title: Occurrence Download

description: A dataset containing 1006180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "HasCoordinate is true",
 "Year is greater than or equal to 2005",
 "Year is less than or equal to 2009",
 "Geometry POLYGON((-25.0 64.0, 45.0 64.0, 45.0 69.0, -25.0 69.0, -25.0 64.0))"
 ]
}

 The dataset includes 1006180 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015600-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqedhb
title: Occurrence Download

description: A dataset containing 1661 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypericum desetangsii)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 1661 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015626-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phr5uw
title: Occurrence Download

description: A dataset containing 4705 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saxifraga umbrosa"
 ]
}

 The dataset includes 4705 records from 243 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015625-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.666d2k
title: Occurrence Download

description: A dataset containing 9102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Alouatta nigerrima, Alouatta seniculus)"
 ]
}

 The dataset includes 9102 records from 321 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015627-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.