cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dqw6p7
title: Occurrence Download

description: A dataset containing 2216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Spartina maritima)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2216 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017800-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxgv45
title: Occurrence Download

description: A dataset containing 7961 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Tricholoma matsutake"
 ]
}

 The dataset includes 7961 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017801-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/011863e8-86d0-4894-91f5-d580c5cade27
title: Data and code accompanying the dissertation "Biomechanics-aware control for robot-assisted physiotherapy: A novel approach to treating shoulder injuries"

description: Code and data associated with the Ph.D. thesis titled "Biomechanics-aware control for robot-assisted physiotherapy: A novel approach to treating shoulder injuries" by Italo Belli,at the Departments of Cognitive Robotics and BioMechanical Engineering, Faculty of Mechanical Engineering, Delft University of Technology.<br>For each chapter, we release the code and data underlying our experiments, tables, and plots, as .zip archives. Each archive contains a "Code" and a "Data" folder, where the former contains scripts and codeused to perform simulations, control our robots, and generate the plots/tables, while the latter collects the data gathered for each study.<br>chapter_2: - readme.txt contains information on how to obtain the data and code from the corresponding Zenodo page.<br>chapter_3: - Code: contains a copy of https://github.com/itbellix/baton-robotic-rehab (refer to this repository for the most recent version of the code). - Data: contains the data generated during our simulations and real-robot experiments, in the form of ROS .bags, with indications on how to plot the relevant contents.<br>chapter_4: - Code: contains a copy of https://github.com/ilybeck/Graduation_PTbot/tree/working_CSO (where the branch is specific to the scripts used to generate the results in this chapter) - Data: contains the data collected during experiments with our participant interacting with the robot (in .npy format, with indications on how to access them)<br>chapter_5: - Code: contains a copy of the repository available at https://github.com/itbellix/biomechanical_safe_deflection, as a ROS package. - Data produced during this study can be accessed at https://data.4tu.nl/datasets/2016260b-d4bb-4b4e-94d5-e2e177913e11<br>chapter_6: - Contains a copy of the repository available at https://github.com/Geblade10/thesis-project, featuring both the code and the data generated for this study.<br>More information is provided to the user in dedicated readme files inside the various folders, together with the platforms used to run our experiments and the software dependencies needed.
DOI: 10.4121/011863e8-86d0-4894-91f5-d580c5cade27.v1
title: Data and code accompanying the dissertation "Biomechanics-aware control for robot-assisted physiotherapy: A novel approach to treating shoulder injuries"

description: Code and data associated with the Ph.D. thesis titled "Biomechanics-aware control for robot-assisted physiotherapy: A novel approach to treating shoulder injuries" by Italo Belli,at the Departments of Cognitive Robotics and BioMechanical Engineering, Faculty of Mechanical Engineering, Delft University of Technology.<br>For each chapter, we release the code and data underlying our experiments, tables, and plots, as .zip archives. Each archive contains a "Code" and a "Data" folder, where the former contains scripts and codeused to perform simulations, control our robots, and generate the plots/tables, while the latter collects the data gathered for each study.<br>chapter_2: - readme.txt contains information on how to obtain the data and code from the corresponding Zenodo page.<br>chapter_3: - Code: contains a copy of https://github.com/itbellix/baton-robotic-rehab (refer to this repository for the most recent version of the code). - Data: contains the data generated during our simulations and real-robot experiments, in the form of ROS .bags, with indications on how to plot the relevant contents.<br>chapter_4: - Code: contains a copy of https://github.com/ilybeck/Graduation_PTbot/tree/working_CSO (where the branch is specific to the scripts used to generate the results in this chapter) - Data: contains the data collected during experiments with our participant interacting with the robot (in .npy format, with indications on how to access them)<br>chapter_5: - Code: contains a copy of the repository available at https://github.com/itbellix/biomechanical_safe_deflection, as a ROS package. - Data produced during this study can be accessed at https://data.4tu.nl/datasets/2016260b-d4bb-4b4e-94d5-e2e177913e11<br>chapter_6: - Contains a copy of the repository available at https://github.com/Geblade10/thesis-project, featuring both the code and the data generated for this study.<br>More information is provided to the user in dedicated readme files inside the various folders, together with the platforms used to run our experiments and the software dependencies needed.
DOI: 10.15468/dl.mggdzf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-70 -80,-60 -80,-60 -70,-70 -70,-70 -80))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017802-251009101135966/datasets/export for details.
DOI: 10.15468/dl.dj3yhn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tinamiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((30 -40,40 -40,40 -30,30 -30,30 -40))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017803-251009101135966/datasets/export for details.
DOI: 10.15468/dl.49328q
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-80 -80,-70 -80,-70 -70,-80 -70,-80 -80))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017804-251009101135966/datasets/export for details.
DOI: 10.15468/dl.cmy5hu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tinamiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((40 -40,50 -40,50 -30,40 -30,40 -40))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017805-251009101135966/datasets/export for details.
DOI: 10.15468/dl.v596y7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amynthas diffringens",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017806-251009101135966/datasets/export for details.
DOI: 10.15468/dl.nzwq48
title: Occurrence Download

description: A dataset containing 32096 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Lynx lynx (Linnaeus, 1758)",
 "Country is Norway",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 32096 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017807-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30353413
title: sp.ex dataset

description: The dataset comprises of .mat and .npy data files originating from motion tracking of 5 children with two different systems: 3D motion tracking and videocamera.
DOI: 10.6084/m9.figshare.30353413.v1
title: sp.ex dataset

description: The dataset comprises of .mat and .npy data files originating from motion tracking of 5 children with two different systems: 3D motion tracking and videocamera.
DOI: 10.15468/dl.sf3qgp
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Alopex lagopus (Linnaeus, 1758)",
 "Country is Norway",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017808-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17303966
title: Chemical Reaction Network for AGB Star Envelopes

description: The reaction network is based on previous networks which were applied to astrochemical models of AGB star envelopes (Frenklach 1989, Cherchneff 2012), with updated and refined kinetic parameters where possible. The current network has been expanded to include modifications and additions related to PAH growth reactions.

You can ask me any questions on the network by e-mail.

If you use the network, please cite the paper Murga et.al.[reference will be added soon].

Network Structure

The network contains the following columns:

1 - Reaction Type



1: Gas-phase reactions with rate constants calculated by:

k(T) = A (T/300)n e-Ea/RT


17: Gas-phase reactions with rate constants calculated by:

k(T) = A Tn e-Ea/RT


11: Accretion reactions

12: Desorption reactions

18: Eley-Rideal surface reactions


2,3,4 - Reagents

Reagent #1, Reagent #2, Reagent #3

5,6,7,8 - Products

Product #1, Product #2, Product #3, Product #4

9,10,11 - Parameters

A (pre-exponential factor), n (temperature exponent), Ea (activation energy)

12 - Dual Arrhenius Flag

"1" indicates the rate constant is calculated as the sum of two Arrhenius expressions

13 - Reverse Reaction Flag

"0" indicates a reverse reaction is automatically added with rate calculated through equilibrium constant

14 - References

Source literature for the reaction

15 - Comments

Additional notes about the reaction




Notation System

A specialized notation system compatible with the BRAHMA computational framework was developed for the reaction network, adhering to the following conventions:

Basic Molecules



Small molecules and substituents (e.g., H2, H2O, CO, C2H2) retain standard chemical formulas as identifiers.


Aromatic Compounds



Aromatic moieties are denoted with the prefix a-:



Benzene: a-C6H6

Pyrene: a-C16H10



Substituents on aromatic rings are appended after the core structure (e.g., toluene: a-C6H5CH3). For multiple substituents, brackets or additional symbols may be used.


Radical Notation



The asterisk (*) distinguishes isomeric radicals based on the position of the unpaired electron:



C4*H3: Unpaired electron on an internal carbon.

C4H3*: Unpaired electron on a terminal carbon.



Compounds labeled as CxHiS in Frenklach's works are represented here as Cx*Hi, while CxHiU compounds become CxHi*.

If only one radical isomer is used, the position of the unpaired electron may be omitted.


Isomer Labeling



Structurally distinct isomers may include additional textual labels after a ! symbol for clarity:



Anthracene: a-C14H10!anth

Phenanthrene: a-C14H10!phen
DOI: 10.5281/zenodo.17347157
title: Chemical Reaction Network for AGB Star Envelopes

description: The reaction network is based on previous networks which were applied to astrochemical models of AGB star envelopes (Frenklach 1989, Cherchneff 2012), with updated and refined kinetic parameters where possible. The current network has been expanded to include modifications and additions related to PAH growth reactions.

You can ask me any questions on the network by e-mail.

If you use the network, please cite the paper Murga et.al.[reference will be added soon].

Network Structure

The network contains the following columns:

1 - Reaction Type



1: Gas-phase reactions with rate constants calculated by:

k(T) = A (T/300)n e-Ea/RT


17: Gas-phase reactions with rate constants calculated by:

k(T) = A Tn e-Ea/RT


11: Accretion reactions

12: Desorption reactions

18: Eley-Rideal surface reactions


2,3,4 - Reagents

Reagent #1, Reagent #2, Reagent #3

5,6,7,8 - Products

Product #1, Product #2, Product #3, Product #4

9,10,11 - Parameters

A (pre-exponential factor), n (temperature exponent), Ea (activation energy)

12 - Dual Arrhenius Flag

"1" indicates the rate constant is calculated as the sum of two Arrhenius expressions

13 - Reverse Reaction Flag

"0" indicates a reverse reaction is automatically added with rate calculated through equilibrium constant

14 - References

Source literature for the reaction

15 - Comments

Additional notes about the reaction




Notation System

A specialized notation system compatible with the BRAHMA computational framework was developed for the reaction network, adhering to the following conventions:

Basic Molecules



Small molecules and substituents (e.g., H2, H2O, CO, C2H2) retain standard chemical formulas as identifiers.


Aromatic Compounds



Aromatic moieties are denoted with the prefix a-:



Benzene: a-C6H6

Pyrene: a-C16H10



Substituents on aromatic rings are appended after the core structure (e.g., toluene: a-C6H5CH3). For multiple substituents, brackets or additional symbols may be used.


Radical Notation



The asterisk (*) distinguishes isomeric radicals based on the position of the unpaired electron:



C4*H3: Unpaired electron on an internal carbon.

C4H3*: Unpaired electron on a terminal carbon.



Compounds labeled as CxHiS in Frenklach's works are represented here as Cx*Hi, while CxHiU compounds become CxHi*.

If only one radical isomer is used, the position of the unpaired electron may be omitted.


Isomer Labeling



Structurally distinct isomers may include additional textual labels after a ! symbol for clarity:



Anthracene: a-C14H10!anth

Phenanthrene: a-C14H10!phen
DOI: 10.15468/dl.8wtqmb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tinamiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((50 -40,60 -40,60 -30,50 -30,50 -40))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017811-251009101135966/datasets/export for details.
DOI: 10.15468/dl.9w2nd3
title: Occurrence Download

description: A dataset containing 38964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Gulo gulo (Linnaeus, 1758)",
 "Country is Norway",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 38964 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017809-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.29819
title: Raw data-20251013
title: Raw data-20251013

description: Multi-omics reveal gut microbiota–metabolite–adipose axis as the driver of hesperidin-mediated metabolic improvement in obese mice
description: Multi-omics reveal gut microbiota–metabolite–adipose axis as the driver of hesperidin-mediated metabolic improvement in obese mice
DOI: 10.15468/dl.dpwhsf
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Hebe speciosa)"
 ]
}

 The dataset includes 36 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017814-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jnb2p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-90 -80,-80 -80,-80 -70,-90 -70,-90 -80))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017812-251009101135966/datasets/export for details.
DOI: 10.15468/dl.75u359
title: Occurrence Download

description: A dataset containing 8626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Jatropha curcas, Jatropha curcas, Jatropha curcas)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8626 records from 322 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017815-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thkufs
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes australis",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009813-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2kymvm
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paspalum longicuspe Nash"
 ]
}

 The dataset includes 125 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061875-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zw62n2
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pterostylis mystacina (D.L.Jones) Janes & Duretto"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097891-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfn2kj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Myxine glutinosa)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148544-230224095556074/datasets/export for details.
DOI: 10.15468/dl.8etwwd
title: Occurrence Download

description: A dataset containing 705 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paspalum lanciflorum Trin."
 ]
}

 The dataset includes 705 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061830-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mu2bre
title: Occurrence Download

description: A dataset containing 138451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Waarnemingen.be - Non-native animal occurrences in Flanders and the Brussels Capital Region, Belgium",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 138451 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0215396-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zka4qw
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((112.91472 -7.07107,133.08528 -7.07107,133.08528 7.07107,112.91472 7.07107,112.91472 -7.07107))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Timonius celebicus Koord."
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068496-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a55f2c
title: Occurrence Download

description: A dataset containing 586 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tibouchina mutabilis (Vell.) Cogn."
 ]
}

 The dataset includes 586 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024250-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7qqgk
title: Occurrence Download

description: A dataset containing 228192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Scardinius Bonaparte, 1837"
 ]
}

 The dataset includes 228192 records from 383 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097884-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.