cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vsqsbq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Cheilodipterus quinquelineatus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187863-230224095556074/datasets/export for details.
DOI: 10.15468/dl.gb6b7r
title: Occurrence Download

description: A dataset containing 436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Vanessa gonerilla (Fabricius, 1775)",
 "TaxonKey is Antanartia dimorphica Howarth, 1966"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 436 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000115-170817152713382/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pn88t9
title: Occurrence Download

description: A dataset containing 5183 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cordia alliodora (Ruiz & Pav.) Oken"
 ]
}

 The dataset includes 5183 records from 248 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126679-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hj87he
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elatostema molle Wedd."
 ]
}

 The dataset includes 41 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187875-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wosw1n
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fannia heydenii (Wiedemann, 1830)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000115-170821155850132/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yuw9w7
title: Occurrence Download

description: A dataset containing 397 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prosopis flexuosa DC."
 ]
}

 The dataset includes 397 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126685-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rabha
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Eviota prasites)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187885-230224095556074/datasets/export for details.
DOI: 10.15468/dl.medniw
title: Occurrence Download

description: A dataset containing 4170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Passiflora suberosa L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4170 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000115-170822121629195/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.awzac3
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-17.63587 34.14255,11.63587 34.14255,11.63587 45.85745,-17.63587 45.85745,-17.63587 34.14255))",
 "Geometry POLYGON((-8.65528 41.15347,-10.05583 36.87025,-7.34992 37.10141,-6.9284 41.15347,-8.65528 41.15347))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eucera elongatula Vachal, 1907"
 ]
}

 The dataset includes 24 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187857-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfplcg
title: Occurrence Download

description: A dataset containing 25388 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dermochelys coriacea (Vandelli, 1761)"
 ]
}

 The dataset includes 25388 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021811-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdcrnk
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxypetalum nitidum Malme"
 ]
}

 The dataset includes 20 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181793-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sjolff
title: Occurrence Download

description: A dataset containing 25700 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Evolvulus L."
 ]
}

 The dataset includes 25700 records from 336 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000115-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.14490065
title: Additional file 4 of Genome sequence, transcriptome, and annotation of rodent malaria parasite Plasmodium yoelii nigeriensis N67

description: Additional file 4: Table S3. Predicted proteins of Plasmodium y. nigeriensis N67 matching IntrPro domains.
DOI: 10.6084/m9.figshare.11345489
title: MOESM11 of Mitochondrial genomes of the early land plant lineage liverworts (Marchantiophyta): conserved genome structure, and ongoing low frequency recombination

description: Additional file 11: Table S6. Taxa list for DSBR protein identification.
DOI: 10.15131/shef.data.23552142.v1
title: IF Mean Intensity files for markers CD133, Nestin, SOX2 and Vimentin

description: Analysis files generated from the IF images for each induvidual stain, the mean intensity was plotted to generate CX18 bulk vs stem IF comparisons
DOI: 10.6084/m9.figshare.23930195
title: Additional file 3 of Integrating bioinformatic resources to identify characteristics of rheumatoid arthritis-related usual interstitial pneumonia

description: Additional file 3: Table S2. “RA yellow module related IPF gene set” and “RA blue module related IPF gene set”.
DOI: 10.6084/m9.figshare.23930195.v1
title: Additional file 3 of Integrating bioinformatic resources to identify characteristics of rheumatoid arthritis-related usual interstitial pneumonia

description: Additional file 3: Table S2. “RA yellow module related IPF gene set” and “RA blue module related IPF gene set”.
DOI: 10.6084/m9.figshare.9774428
title: Efficacy and safety of ipragliflozin as add-on to metformin for type 2 diabetes: a meta-analysis of double-blind randomized controlled trials

description: <b>Objectives</b>: To evaluate the efficacy and safety of ipragliflozin as add-on therapy to metformin in patients with type 2 diabetes mellitus. <b>Methods</b>: Systematic literature searches were performed in several databases across PubMed, the Cochrane Central Register of Controlled Trials, Embase, Medline, ClinicalTrials.gov, PsycINFO, and Web of Science from inception to 12 March 2019. After the extraction of data from eligible studies, randomized controlled trials (RCTs) were assessed for quality and analyzed statistically. Standardized mean difference (SMD) and risk ratio (RR) with 95% CIs were used to evaluate efficacy and safety end-points. Sensitivity analyses and subgroup analyses based on intervention times were also performed. <b>Results</b>: Five RCTs with 847 patients were included. Compared to metformin alone, ipragliflozin as an adjuvant to metformin reduced glycated hemoglobin (HbA1c) in 12 weeks and 24 weeks, respectively [12 w: SMD −0.30, 95% CI −0.51 to −0.10%, p = 0.004; 24 w: SMD −0.88, 95% CI −1.04 to −0.72%, p &lt; 0.00001; Total: SMD −0.66, 95% CI −0.79 to −0.53%, p &lt; 0.00001]. In addition, ipragliflozin as adjuvant therapy to metformin body weight (Total: SMD −1.47, 95% CI [−1.80,-1.14], p &lt; 0.00001), waist circumference (Total: SMD −1.09, 95% CI [−1.62,-0.56], p &lt; 0.00001), and blood pressure (SBP Total: SMD −3.36, 95% CI [−5.11.-1.61], p = 0.0002; DBP Total: SMD −2.18, 95% CI [−3.63,-0.74], p = 0.003). Compared to metformin alone, ipragliflozin as an adjuvant to metformin showed significant risks in the skin and subcutaneous tissue disorders and constipation. <b>Conclusion:</b> Compared to metformin alone, ipragliflozin plus metformin significantly improved glycemic control, reduced body weight, and lowered blood pressure; however, further high-quality trials are required to determine their long-term efficacy and safety.
DOI: 10.6084/m9.figshare.9774428.v1
title: Efficacy and safety of ipragliflozin as add-on to metformin for type 2 diabetes: a meta-analysis of double-blind randomized controlled trials

description: <b>Objectives</b>: To evaluate the efficacy and safety of ipragliflozin as add-on therapy to metformin in patients with type 2 diabetes mellitus. <b>Methods</b>: Systematic literature searches were performed in several databases across PubMed, the Cochrane Central Register of Controlled Trials, Embase, Medline, ClinicalTrials.gov, PsycINFO, and Web of Science from inception to 12 March 2019. After the extraction of data from eligible studies, randomized controlled trials (RCTs) were assessed for quality and analyzed statistically. Standardized mean difference (SMD) and risk ratio (RR) with 95% CIs were used to evaluate efficacy and safety end-points. Sensitivity analyses and subgroup analyses based on intervention times were also performed. <b>Results</b>: Five RCTs with 847 patients were included. Compared to metformin alone, ipragliflozin as an adjuvant to metformin reduced glycated hemoglobin (HbA1c) in 12 weeks and 24 weeks, respectively [12 w: SMD −0.30, 95% CI −0.51 to −0.10%, p = 0.004; 24 w: SMD −0.88, 95% CI −1.04 to −0.72%, p &lt; 0.00001; Total: SMD −0.66, 95% CI −0.79 to −0.53%, p &lt; 0.00001]. In addition, ipragliflozin as adjuvant therapy to metformin body weight (Total: SMD −1.47, 95% CI [−1.80,-1.14], p &lt; 0.00001), waist circumference (Total: SMD −1.09, 95% CI [−1.62,-0.56], p &lt; 0.00001), and blood pressure (SBP Total: SMD −3.36, 95% CI [−5.11.-1.61], p = 0.0002; DBP Total: SMD −2.18, 95% CI [−3.63,-0.74], p = 0.003). Compared to metformin alone, ipragliflozin as an adjuvant to metformin showed significant risks in the skin and subcutaneous tissue disorders and constipation. <b>Conclusion:</b> Compared to metformin alone, ipragliflozin plus metformin significantly improved glycemic control, reduced body weight, and lowered blood pressure; however, further high-quality trials are required to determine their long-term efficacy and safety.
DOI: 10.6084/m9.figshare.23930209
title: Additional file 6 of New insights into the plastome evolution of Lauraceae using herbariomics

description: Supplementary Material 6: Table S1. Summary of available plastomes of Lauraceae in NCBI. Table S2. Number of three repeats types. Table S3. Length of three repeats types. Table S4. Types and amounts of SSRs in the five newly sequenced chloroplast genomes. Table S5. The distribution of simple sequence repeats. Table S6. The pairwise similarity of Lauraceae. Table S7. Plastomes and sequences obtained from NCBI for phylogenetic studies.
DOI: 10.6084/m9.figshare.23930209.v1
title: Additional file 6 of New insights into the plastome evolution of Lauraceae using herbariomics

description: Supplementary Material 6: Table S1. Summary of available plastomes of Lauraceae in NCBI. Table S2. Number of three repeats types. Table S3. Length of three repeats types. Table S4. Types and amounts of SSRs in the five newly sequenced chloroplast genomes. Table S5. The distribution of simple sequence repeats. Table S6. The pairwise similarity of Lauraceae. Table S7. Plastomes and sequences obtained from NCBI for phylogenetic studies.
DOI: 10.6084/m9.figshare.14489936.v1
title: Additional file 1 of Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers

description: Additional file 1: Table S1. Characteristics of IBC and non-IBC patients.
DOI: 10.15131/shef.data.23552049
title: CX18 Bulk vs Stem qPCR Analysis

description: Raw data files obtained through RT-PCR analysis of CX18 stem and bulk cells, probing for stem markers CD133, NESTIN, SOX2. Data for Supplementary Figure S1A.
DOI: 10.6084/m9.figshare.11345507
title: MOESM1 of Mitochondrial genomes of the early land plant lineage liverworts (Marchantiophyta): conserved genome structure, and ongoing low frequency recombination

description: Additional file 1: Table S1. Overview of the 29 newly generated liverwort mitochondrial genomes.
DOI: 10.6084/m9.figshare.15015292.v1
title: Interleukin polymorphisms and protein levels associated with lung cancer susceptibility and phenotypes

description: We conducted a comprehensive analysis to explore whether multiple <i>interleukin</i> (<i>IL), IL-1β, IL-4, IL-6, IL-8</i> and <i>IL-10</i>, polymorphisms and IL proteins (IL-6, IL-10) relate to lung cancer (LC) susceptibility or clinical characteristics. We performed the standard meta-analysis procedures according to PRISMA. The odds ratio (OR) and mean difference (MD) were used for analysis. We investigated 11 variants from 43 articles, and found that <i>IL-1β</i> rs16944 (<i>p</i> = 0.04) and <i>IL-10</i> rs1800872 (<i>p</i> = 0.003) decreased while <i>IL-10</i> rs1800896 (<i>p</i> = 0.007) increased LC risks. We also found that <i>IL-1β</i> rs1143627 decreased NSCLC risks (<i>p</i> = 0.03). The heterozygotes and homozygotes contributed differently. In addition, another 15 articles were involved to explore the relationship between IL proteins and LC. We found that LC patients accounted for higher serum IL-6 of 16.60 pg/mL (<i>p</i> &lt; 0.00001) and higher serum IL-10 of 3.47 pg/mL (<i>p</i> = 0.02) than that of controls. Furthermore, IIIA-Ⅳ LC patients tended to have higher proportion of positive IL-6 staining in lung tumor tissue in contrast with IA-IIB patients by TNM stage (<i>p</i> = 0.0002). Four variants from <i>IL-1β</i> and <i>IL-10</i>, and serum IL-6 and IL-10 levels are associated with LC risks.
DOI: 10.6084/m9.figshare.17638810
title: Machine learning revealed molecular classification of colorectal cancer with negative lymph node metastasis

description: <b>Purpose:</b> Accurate preoperative staging directly affects the treatment decision of patients with rectal cancer. However, our understanding of the immune subclasses of CRC without lymph node metastasis is still incomplete. <b>Materials and methods:</b> Here, we first analyzed the subclasses of CRC without lymph node metastasis on the Cancer Genome Atlas (TCGA) and verified its stability in the GSE39582 dataset. Four immune subclasses (C1–C4) were identified and verified by non-negative matrix factorization (NMF) of gene expression profiles. Then, ICI scores of six genes were constructed to characterize subclasses. <b>Results:</b> There were significant differences in metabolic and progression-associated signatures, immune characteristics, and clinical characteristics among subclasses. C3 represented a good prognosis with high TMB. C4 showed unique immune characteristics. We believe that C3 is the initial stage of CRC. After the C1 and C2 stages, it progresses to the C4 stage, and finally, lymph node metastasis occurs. <b>Conclusions: </b>This work may help to provide a basis for immunotherapy decision-making in early CRC and may guide personalized methods of cancer immunotherapy.
DOI: 10.6084/m9.figshare.14489939.v1
title: Additional file 2 of Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers

description: Additional file 2: Table S2. Technical details for sequencing.
DOI: 10.6084/m9.figshare.14489942.v1
title: Additional file 3 of Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers

description: Additional file 3: Table S3. Tumor purity of IBC samples.
DOI: 10.6084/m9.figshare.14489957.v1
title: Additional file 8 of Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers

description: Additional file 8: Table S7. Summary of previously published IBC studies.
DOI: 10.24381/cds.1f4e2d00
title: Copernicus Interactive Climate Atlas gridded monthly dataset
DOI: 10.6084/m9.figshare.14490068
title: Additional file 5 of Genome sequence, transcriptome, and annotation of rodent malaria parasite Plasmodium yoelii nigeriensis N67

description: Additional file 5: Table S4. Predicted Plasmodium y. nigeriensis N67 proteins that match those in Reactome pathways.
DOI: 10.6084/m9.figshare.14490074.v1
title: Additional file 7 of Genome sequence, transcriptome, and annotation of rodent malaria parasite Plasmodium yoelii nigeriensis N67

description: Additional file 7: Table S6. Completeness statistics of the predicted Plasmodium y. nigeriensis N67 genome and transcriptome in matching. Apicomplexan and Plasmodium benchmarking universal single-copy orthologs (BUSCO) gene sets.
DOI: 10.6084/m9.figshare.10298792
title: The association between orthostatic hypotension and cognition and stroke: a meta-analysis of prospective cohort studies

description: <b>Purposes:</b> Many studies have indicated that orthostatic hypotension (OH) may be a risk factor for dementia and stroke, but the results have been inconsistent. To further ascertain the links between OH and cognition or stroke, a meta-analysis was performed. <b>Methods:</b> The Chinese Biomedical Database, PubMed, Web of Science, and the Cochrane Library database were searched (up to March 2019) to identify prospective cohort studies that examined the associations between OH and the risks of stroke and dementia among adult populations. Subgroup analyses and meta-regression analyses were conducted to identify sources of heterogeneity. We also performed Begg’s test and Egger’s test to assess publication bias. <b>Results:</b> A total of 3490 articles were identified, and 18 prospective observational cohort studies were ultimately included. Among these studies, eight prospective studies were about stroke, nine studies were about cognition and one study reported data about both stroke and dementia. Meta-analysis revealed an association between OH and worse cognition (hazard ratio (HR): 1.18, 95% confidence interval (CI): 1.03–1.35, I<sup>2</sup> = 69.5%). For dementia, the pooled HR was 1.30, with 95% CI: 1.14–1.48, I<sup>2</sup> = 31.0%. In addition, we found that OH was associated with a higher risk of stroke (HR: 1.36, 95% CI = 1.17–1.57, I<sup>2</sup> = 67.3%). No publication bias was detected. <b>Conclusion:</b> This meta-analysis provides evidence that OH was associated with worse cognition. OH accounted for a 30% increase in the risk of dementia and a 36% increase in the risk of stroke.
DOI: 10.6084/m9.figshare.10298792.v1
title: The association between orthostatic hypotension and cognition and stroke: a meta-analysis of prospective cohort studies

description: <b>Purposes:</b> Many studies have indicated that orthostatic hypotension (OH) may be a risk factor for dementia and stroke, but the results have been inconsistent. To further ascertain the links between OH and cognition or stroke, a meta-analysis was performed. <b>Methods:</b> The Chinese Biomedical Database, PubMed, Web of Science, and the Cochrane Library database were searched (up to March 2019) to identify prospective cohort studies that examined the associations between OH and the risks of stroke and dementia among adult populations. Subgroup analyses and meta-regression analyses were conducted to identify sources of heterogeneity. We also performed Begg’s test and Egger’s test to assess publication bias. <b>Results:</b> A total of 3490 articles were identified, and 18 prospective observational cohort studies were ultimately included. Among these studies, eight prospective studies were about stroke, nine studies were about cognition and one study reported data about both stroke and dementia. Meta-analysis revealed an association between OH and worse cognition (hazard ratio (HR): 1.18, 95% confidence interval (CI): 1.03–1.35, I<sup>2</sup> = 69.5%). For dementia, the pooled HR was 1.30, with 95% CI: 1.14–1.48, I<sup>2</sup> = 31.0%. In addition, we found that OH was associated with a higher risk of stroke (HR: 1.36, 95% CI = 1.17–1.57, I<sup>2</sup> = 67.3%). No publication bias was detected. <b>Conclusion:</b> This meta-analysis provides evidence that OH was associated with worse cognition. OH accounted for a 30% increase in the risk of dementia and a 36% increase in the risk of stroke.
DOI: 10.15131/shef.data.23552058
title: CX18 Bulk Vs Stem CD133 IF image files

description: Comparing CX18 bulk vs stem cultured cells CD133 expression using immunofluorescent staining.
DOI: 10.6084/m9.figshare.14489936
title: Additional file 1 of Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers

description: Additional file 1: Table S1. Characteristics of IBC and non-IBC patients.
DOI: 10.6084/m9.figshare.14490077.v1
title: Additional file 8 of Genome sequence, transcriptome, and annotation of rodent malaria parasite Plasmodium yoelii nigeriensis N67

description: Additional file 8: Table S7. Summary statistics of genes and orthogroups from three Plasmodium yoelii parasites.
DOI: 10.6084/m9.figshare.14489954.v1
title: Additional file 7 of Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers

description: Additional file 7: Table S6. Germline SNVs in TGF β pathway.
DOI: 10.15131/shef.data.23552130
title: CX18 Bulk Vs Stem Vimentin IF Image Files

description: Immunofluorescent image files comparing CX18 bulk vs stem cultured cells Vimentin expression.
DOI: 10.6084/m9.figshare.11345480.v1
title: MOESM10 of Mitochondrial genomes of the early land plant lineage liverworts (Marchantiophyta): conserved genome structure, and ongoing low frequency recombination

description: Additional file 10: Table S5. Repeat recombinations for 534 repeats within 50 to 300 bp range in liverwort mitochondria.
DOI: 10.6084/m9.figshare.11345489.v1
title: MOESM11 of Mitochondrial genomes of the early land plant lineage liverworts (Marchantiophyta): conserved genome structure, and ongoing low frequency recombination

description: Additional file 11: Table S6. Taxa list for DSBR protein identification.
DOI: 10.6084/m9.figshare.11345462
title: MOESM2 of An analysis of mutational signatures of synonymous mutations across 15 cancer types

description: Additional file 2: Table S3. List of neutral synonymous mutations of HMCGs in 1000G dataset.