cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.f862c/13
title: M613E24-sepsis C4d

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/14
title: M613E24-sepsis DAF

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/15
title: M613E24-sepsis IgG

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/9
title: M613E24-control IgG

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.fd847/1
title: Locomotor performance data for 21 species of lizards

description: Snout-vent length, sprint speed, acceleration, and time and distance run to exhaustion of individuals for 21 species of lizards from the southwest United States.
DOI: 10.5061/dryad.h3112/1
title: Database-Bd-Amazon

description: Database including geographic coordinates and pathogen infection status of Leptodactylus species collected during the last century in the Amazon forest.
DOI: 10.5061/dryad.h8017/1
title: Aptinothripsrufus_genotype file

description: This worksheet contains genotypes of all individuals at eleven microsatellite loci as well as haplotypes of mitochondrial sequence markers COI-COII and pseudohaplotypes of the nuclear sequence markers H3 and Elongation factor.
DOI: 10.5061/dryad.h8017/2
title: Elongation- factor (EF) sequences

description: This fasta file contains sequences of EF nuclear sequence markers of all individuals. There is one sequence per individual and heterozygous positions are marked with IUPAC ambiguity code.
DOI: 10.5061/dryad.h8017/3
title: Elongation- factor (EF) pseudohaplotypes

description: This fasta file contains 2 haploid sequences of EF marker per individual, obtained after phasing of raw sequences.
DOI: 10.5061/dryad.h8017/4
title: Histone3 (H3) pseudohaplotypes

description: This fasta file contains 2 haploid sequences of H3 marker per individual, obtained after phasing of raw sequences.
DOI: 10.5061/dryad.hf887/1
title: raw data

description: This is a collection of phenotypic values of several life history and stress resistance traits in flies laboratory natural selected in a constant, predictable and unpredictable daily fluctuating thermal regimes
DOI: 10.5061/dryad.m280g/1
title: Brood care acts
DOI: 10.5061/dryad.m280g/2
title: Brood care time
DOI: 10.5061/dryad.m280g/3
title: Trail following

description: Annulus half width indicates the half width of the area around the pheromone trail where ants were tracked.
DOI: 10.5061/dryad.n6068/1
title: 7Mix_E7 (3)

description: 3rd part of the 7Mix_E7 fastq data
DOI: 10.5061/dryad.n6068/2
title: 7Mix_E7 (1)

description: 1st part of 7Mix_E7 fastq data
DOI: 10.5061/dryad.n6068/3
title: 7Mix E7 (2)

description: 2nd part of 7Mix_E7 fastq data
DOI: 10.5061/dryad.n6068/4
title: 7Mix_E7 (4)

description: 4th part of 7Mix_E7 fastq data
DOI: 10.5061/dryad.qm1v0/1
title: 16S

description: 16S alignement: (Hymenoptera: Aphidiinae)
DOI: 10.5061/dryad.qm1v0/2
title: 28S

description: 28S alignement: (Hymenoptera: Aphidiinae)
DOI: 10.5061/dryad.qm1v0/3
title: Argk_Exon1

description: Arginine Kinase Exon 1 alignement: (Hymenoptera: Aphidiinae)
DOI: 10.5061/dryad.qm1v0/4
title: Argk_Exon2

description: Arginine Kinase Exon 2 alignement: (Hymenoptera: Aphidiinae)
DOI: 10.5061/dryad.qm1v0/5
title: COI

description: COI alignement: (Hymenoptera: Aphidiinae)
DOI: 10.5061/dryad.qm1v0/6
title: CytB

description: Cytochrome B alignement: (Hymenoptera: Aphidiinae)
DOI: 10.5061/dryad.qm1v0/7
title: EF

description: Elongation factor 1 alpha alignement: (Hymenoptera: Aphidiinae)
DOI: 10.5061/dryad.s6518/1
title: walton_etal_2016_J_Appl_Ecol

description: Zip file containing simulation software (fortran code) and R scripts used to generate figures in the paper. Unzip and see reame.txt
DOI: 10.5061/dryad.t86pt/1
title: Remonti_2015_OIK_Pine marten data

description: Data about the selected studies on pine martens diet, the percent estimated volume of the main food types in pine marten diets, and the macronutrient balance in pine marten diets.
DOI: 10.5061/dryad.182dv/20
title: Quartet Gene Trees, D-statistics, and DFOIL results for Figs S4/5
DOI: 10.5061/dryad.1k3d2/1
title: Kolbe et al_Function_Ecology_data_dryad

description: The Excel file has three worksheets, one each for data on locomotor performance, morphology, and habitat use of two species of Anolis lizards from the British Virgin Islands.
DOI: 10.5061/dryad.28jn6/1
title: Zhang et al. Plos One manuscript data

description: Cobalamin and thiol metabolite data are provided for the specified Figures.
DOI: 10.5061/dryad.584kb/1
title: File S1-4 and Table S1
DOI: 10.5061/dryad.67n14/1
title: Kavanagh and Hillier 2015 Data Nov 2015

description: Summary of Single sensillum recording data from male and female H. virescens following injection of octopamine or saline
DOI: 10.5061/dryad.73qf0/1
title: Appendix and data files

description: Appendix 1 and 2 were used in the main text. Four original data files were used to conduct the analyses.
DOI: 10.5061/dryad.77249/1
title: Data BurgerDolivoWedekind PLOS ONE 2015

description: Ejaculate characteristics and peripheral testosterone plasma concentration in 12 stallion horses after exposure to different social environments
DOI: 10.5061/dryad.7c30v/1
title: MesoScale Discovery data

description: Table comprising all MesoScale Discovery data collected for the reported work.
DOI: 10.5061/dryad.7c30v/2
title: 2-photon imaging data
DOI: 10.5061/dryad.7c30v/3
title: qPCR results

description: qPCR data associated with reported data, with Cts as generated by instrument software.
DOI: 10.5061/dryad.80f4f/1
title: gpiper_0.1.tar

description: gpiper is an R package that is required to run the program gsi_sim used in the study.  Please see the Readme file for instructions.
DOI: 10.5061/dryad.80f4f/2
title: herring_0.0.1.tar

description: 'Herring' is an R package that contains all the data and the code required for reproduction of the results in the study.
DOI: 10.5061/dryad.80f4f/3
title: Table S2 - Individual bycatch mixtures

description: This is a MS Excel spreadsheet that contains posterior mean estimated mixing proportions for each individual in the mixture sample (i.e., the bycatch).  These estimates were calculated using gsi_sim.
DOI: 10.5061/dryad.87815/1
title: Exotic Species Data in Lake Mburo

description: File contain data from the field experiment.
DOI: 10.5061/dryad.9tq97/1
title: Preprocessed yearly records of seismic events

description: Training data file: Top10-all-win2-train.csv (136 records related to years 1988-2005).  Testing data file: Top10-all-win2-test.csv (49 records related to years 2006-2010). The data includes only top 10 areas having the highest number of earthquakes. The list of top 10 areas is shown in Table 1 of the paper. The format of all files in the folder is compatible with the IN / M-IFN software.
DOI: 10.5061/dryad.b2110/1
title: Data for: Imprinting can cause a maladaptive preference for infectious conspecifics

description: In this file we provide the raw data from the behavioural experiment described in the paper. Data from each trial is in a separate row, and the columns are as follows: trial number; tank side infected (the side of the tank receiving the cue of infected fish); day of infection (number of days since the stimulus fish had been infected when it was used to create the cue); test fish sex; test fish length; imprinting (the imprinting treatment the fish had received); propinfected (the proportion of time the test fish spent associated with the cue of infected stimulus fish - the response variable); stimfishpair (identity of the stimulus pair); wormcount (the number of parasites on the infected stimulus fish).
DOI: 10.5061/dryad.bn184/1
title: FINAL DATA_new

description: Landmarks, Procrustes coordinates, PC scores, Eigenvalues and species mean scores used in PIC analysis.
DOI: 10.5061/dryad.bn184/2
title: Jones_tree

description: Phylogenetic tree used in the comparative analyses. See supplemental Figure 2 for more information.
DOI: 10.5061/dryad.d6bc7/1
title: Fecundity

description: Egg counts from RNA-seq queens and queens which were monitored for 4 weeks
DOI: 10.5061/dryad.d6bc7/2
title: Script_RNA-seq

description: R script for RNA-seq analysis
DOI: 10.5061/dryad.d6bc7/3
title: RNA-seq

description: Gene counts and DESeq2 analysis result
DOI: 10.5061/dryad.d6bc7/4
title: Cross_species_comparisons

description: Cross-species comparison matrix (Camponotus & Drosophila studies)
DOI: 10.5061/dryad.f862c/16
title: M613E24-sepsis RBC + WGA

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/17
title: M613E24-sepsis RBC

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/18
title: M613E48-control C3d

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/19
title: M613E48-control C4d

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/20
title: M613E48-control Ca 2+

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/21
title: M613E48-control IgG

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/22
title: M613E48-control NO

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/23
title: M613E48-control RBC + WGA

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/24
title: M613E48-control RBC

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/25
title: M613E48-sepsis C3d

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.fm654/1
title: BCI_SeedlingDynamics2001_2021

description: The growth, recruitment and mortality of seedlings ≥20 cm tall on Barro Colorado Island, Panama (625773 easting and 1011774 northing in UTM Zone 17).  Seedlings were monitored in ~20,000 one  square-meter plots within the 50-ha forest dynamics plot (FDP). The 50-ha FDP  plot is a 1000 m by 500 m rectangle of lowland tropical moist forest inside of which all woody trees and shrubs with stems at least 1 cm in diameter at 1.3m tall (dbh) have been censused at ~5 year intervals since the early 1980’s.  In 2001, 20,000 1 m2 seedling plots were established in a 5-m grid across the FDP, where all freestanding woody plants greater than 20 cm in height and less than 1 cm d.b.h. are measured, tagged and identified yearly until 2013 (except in 2005, 2007 and 2010; seedlings were not censused in a small subset of the 20,000 plots to avoid damage to previously established research plots; see Comita et al. 2007 and Comita and Hubbell 2009 for more details).
DOI: 10.5061/dryad.h5j86/1
title: Algal growth time series

description: Density of algal cultures through time across 6 different temperatures
DOI: 10.5061/dryad.h5j86/2
title: Functional Response data

description: Results of the functional response experiments.  For each replicate the species, number of Daphnia, time elapsed in the feeding trial, initial density of Scenedesmus obliquus and final density of S. obliquus is provided.
DOI: 10.5061/dryad.k6g40/1
title: 1_detection_distance

description: Data file contains the landing success for each fly per treatment (i.e. vinegar concentration) per distance (i.e. 50, 75, 100 cm) in a binomial format.
DOI: 10.5061/dryad.k6g40/2
title: 2_two_choice_patch

description: Data file contains the landing each fly on a specific concentration in a treatment (i.e. two-odour point source patches) in a binomial format.
DOI: 10.5061/dryad.k6g40/3
title: 3_four_choice_patch

description: Data file contains the landing each fly on a specific concentration in a treatment (i.e. four-odour point source patches) in a binomial format.
DOI: 10.5061/dryad.k6g40/4
title: 4_resource_density

description: Data file contains the landing success for each fly per resource density in the patch (i.e. vinegar concentration) in a binomial format.
DOI: 10.5061/dryad.m280g/4
title: Predation

description: Predation was classified into 4 categories: 1= no aggression, 2= mandible flaring, 3= latent attack (delayed or not sustained for the duration the assay), 4= attack.
DOI: 10.5061/dryad.m280g/5
title: Apoptosis

description: MB= mushroom bodies, AL= antennal lobes, OL = optic lobes, CC= central complex, SEZ= subesophageal zone RCB= remainder of the central brain.  Brain region cells reflects the number of cells per brain region based on a subset of sampled brains (see methods for details). Proportion X (followed by brain region) reflects the amount of that brain region available for counting. Brain region prop indicates the proportion of apoptotic cells of each region scaled by the number of cells per region and the proportion of that region sampled.  Brain region prop + 0.001 adds a constant for non-zero values.  Log brain region prop are the log transformed values of brain region prop +0.001.
DOI: 10.5061/dryad.m280g/6
title: Microglomeruli

description: Lateral and medial refer to lateral and medial calyces.  Distal and proximal refer to circles used for sampling.  Details are provided in methods.
DOI: 10.5061/dryad.m280g/7
title: Amines

description: DA and 5HT are raw values for the 20 ul sampled of homogenate sampled.  Corr 5HT and Corr DA are whole brain titers.
DOI: 10.5061/dryad.m280g/8
title: Phototaxis
DOI: 10.5061/dryad.m280g/9
title: Activity
DOI: 10.5061/dryad.m6k5k/1
title: Geographic localities for Tegeticula yuccasella

description: Latitude/Longitude coordinates for moth localities
DOI: 10.5061/dryad.mj8m0/1
title: Nest temperature data

description: Data provide temperatures at 4 depths within natural Chelydra serpentina nests, from IL, USA
DOI: 10.5061/dryad.mj8m0/2
title: External egg temperatures

description: Data are temperatures on the shell surface of Chelydra serpentina eggs exposed to large and small thermal gradient treatments within the laboratory.
DOI: 10.5061/dryad.mj8m0/3
title: Internal egg temperatures

description: Data are temperatures within live eggs exposed to either a small or large thermal gradient in the laboratory.
DOI: 10.5061/dryad.mj8m0/4
title: SoilSimulation_Output

description: Simulated soil temperature data using the Campbell and Norman (1998) model.  Data used to assess the potential for embryos to experience biologically-relevant thermal gradients.  File is too large to be opened in MS Excel.
DOI: 10.5061/dryad.mq793/1
title: Simulation Results for Variation in Computers

description: These are simulation results for running the simulation with and without Multiagent System for Minimizing Carbon Footprint (MASMINC). The MS Excel file has three worksheets. One each for number of computers ranging from n=100, n = 500, n=1000. The columns are runno for the simulation run. nComputers shows the number of computers. Hour shows the time of day. CFPA shows the Carbon Footprint Allowance. In each worksheet, there are two set of columns. One are for results without MASMINC. The other are for results with MASMINC.
DOI: 10.5061/dryad.n6068/5
title: README_plosone
DOI: 10.5061/dryad.qh03c/1
title: Gonzalez et al Data

description: raw data and statistical analysis
DOI: 10.5061/dryad.r80d3/1
title: Data for egg number, phenology, abundance, diversity and lake characteristics analysis

description: This data file includes zooplankton diversity data that were provided by K. Patalas and pelagic samples that we collected from from lakes in 2011. The data file also includes lake chemistry data that we collected from the field in 2011. The remainder of the data is the results from the hatching experiment we conducted, which is the focus of this manuscript.
DOI: 10.5061/dryad.s3d45.1
title: Data from: Role of selection and gene flow in population differentiation at the edge vs. interior of the species range differing in climatic conditions
DOI: 10.5061/dryad.s3d45.2
title: Data from: Role of selection and gene flow in population differentiation at the edge vs. interior of the species range differing in climatic conditions
DOI: 10.5061/dryad.s3d45.2/1.2
title: Data for depositing
DOI: 10.5061/dryad.s3d45.2/2.2
title: Data for depositing - oat SSR data
DOI: 10.5061/dryad.s3d45.2/3.2
title: Data for depositing - field introduction

description: Field experiment data
DOI: 10.5061/dryad.v2st1/1
title: Data_IsmaelAymerich_PLOSONE_2015

description: Excel file containing hyperspectral signatures of tephra and No-tephra samples extracted from an Antarctic sediment core. Tephra signatures are labelled 1, while No-tephra spectra are labelled 0.
DOI: 10.5061/dryad.2317q/1
title: BehavioralDataPONE-D-15-29963R2

description: Behavioral data for all butterfly assays in the study "Rearing temperature influences adult response to changes in mating status"
DOI: 10.5061/dryad.2317q/2
title: LifeSpanDataPONE-D-15-29963R2

description: Lifespan data for all butterflies used in lifespan experiment.
DOI: 10.5061/dryad.2jj6q/1
title: Data for Kervinen et al. JAE-2014-00782.R3

description: Data for "Age-dependent and age-independent sexual selection on multiple male traits in the lekking black grouse (Lyrurus tetrix)" by Kervinen, Matti; Lebigre, Christophe & Soulsbury, Carl
DOI: 10.5061/dryad.2rs4k/1
title: RSEM_files from four different tissues and 8 libraries

description: RSEM files from 4 different tissues of Arbacia lixula, the black sea urchin, and two replicates per tissue (8 libraries in total)
DOI: 10.5061/dryad.2rs4k/2
title: DESeq_results

description: DEseq results of the comparison of two somatic (Coelomocytes vs Digestive) and two reproductive tissues (Ovary vs Testis) in the black sea urchin Arbacia lixula
DOI: 10.5061/dryad.2rs4k/3
title: Arbacia lixula_Assemblies_Tissues

description: De novo assemblies of the transcriptomes of four different tissues (Coelomocytes, Digestive, Ovary and Testis) in the black sea urchin Arbacia lixula
DOI: 10.5061/dryad.2rs4k/4
title: Arbacia lixula_Annotation_tissues

description: Annotations for the transcriptomes of four different tissues (Coelomocytes, Digestive, Ovary and Testis) in the black sea urchin Arbacia lixula
DOI: 10.5061/dryad.2rs4k/5
title: Arbacia_lixula_Reference_Assembly_Trinity

description: De novo assembly of the Reference transcriptome of the black sea urchin Arbacia lixula. The reference transcriptome includes transcritps from coelomocytes, digestive, ovary and testis
DOI: 10.5061/dryad.2rs4k/6
title: Arbacila_lixula_Reference_annot

description: Annotations of the reference transcriptome of the black sea urchin Arbacia lixula
DOI: 10.5061/dryad.5rg73/1
title: Raw fitness data for each individual planted in Michigan and Virginia

description: Germination and survival data were collected in the field. Upon senescence, shoot biomass was harvested and fruits were counted. Data was collected by Roles and Conner in Michigan and by Rutter and Fenster in Virginia. Columns are described in the ReadMe file. Additional details found in the paper and Supporting Information.
DOI: 10.5061/dryad.75qh4/1
title: Cogjocs_master_raw_final

description: The file included all data about the study. For example, Demographic Characteristic, examination score and so on.
DOI: 10.5061/dryad.75qh4/2
title: Manuscript_Table

description: All tables in the manuscript.
DOI: 10.5061/dryad.75qh4/3
title: Figure

description: The figure in the manuscript.
DOI: 10.5061/dryad.9tq97/2
title: Information Network (IN) and Multi-Objective Info-Fuzzy Network (M-IFN) Software

description: IN and M-IFN Software (V. 1.90 .NET Framework 2.0). Developed by Mark Last.  Further information is available in the ReadMe file.
DOI: 10.5061/dryad.b42vd/1
title: Zip file of input files

description: Includes fasta sequence files, microsatellite genotype files, as well as other input files
DOI: 10.5061/dryad.cc6c0/1
title: Matheson_Sakata_Data

description: Spreadsheet containing identified branch points and their measured transition probabilities, durations of silent intervals (gaps), and syllable amplitudes. Includes recordings as young (~6 months) and older (~23 months) adults and across social contexts.
DOI: 10.5061/dryad.cs6t6/1
title: Supporting Information: IMPLEMENTATION OF COMPLEX BIOLOGICAL LOGIC CIRCUITS USING SPATIALLY DISTRIBUTED MULTICELLULAR CONSORTIA

description: Supporting Experimental Data
DOI: 10.5061/dryad.d4196/1
title: Morrison 2016 Eastern Rockhopper Penguin laying data

description: All data used in Morrison 2016 (Journal of Avian Biology doi:10.1111_jav.00740).
DOI: 10.5061/dryad.f862c/26
title: M613E48-sepsis C4d

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/27
title: M613E48-sepsis Ca 2+

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/28
title: M613E48-sepsis IgG

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/29
title: M613E48-sepsis NO

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/30
title: M613E48-sepsis RBC + WGA

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/31
title: M613E48-sepsis RBC

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/32
title: M616E0-normal RBC + c3d

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/33
title: M616E0-normal RBC + c4d

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/34
title: M616E0-normal RBC + IgG

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.gn4p4/1
title: Russula mega-phylogeny alignment

description: Nexus file of global clustered MOTU's from GenBank and sequences generated for this study for 4 loci (ITS 1-845, LSU 846-1800, rpb1 1801-3114, and rpb2 3115-3927). Note: in a mega-phylogeny approach multigene loci are taken from clustered sets based on sequence similarity and are not necessarily sequences from identified voucher sequence.
DOI: 10.5061/dryad.gn4p4/2
title: Russula mega-phylogeny ML constrained tree

description: Maximum likelihood phylogenetic reconstruction of clustered global GenBank sequences using a constraint tree implemented in RaXML.
DOI: 10.5061/dryad.hg353/1
title: Field Experiment: FN Addition

description: This data was collected from a population of Turnera ulmifolia, in Key Largo, Florida. Seed set was measured on plants with ambient floral nectar or with an aditional 10 uL. Plant ID is an identifier to distinguish different plants. Treatment can be "Normal FN," i.e. ambient floral nectar available, or "Plus FN," i.e. an additional 10 uL was added to flowers. Leafs is a count of the number of leaves on the plant. AvgSS is the average seed set for all flowers produced on the plant over a six day period.