cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23645/epacomptox.6062527.v2
title: Archived Distributed Structure-Searchable Toxicity (DSSTox) Data

description: The most updated EPA DSSTox data files are available https://doi.org/10.23645/epacomptox.5588566 . EPA’s Distributed Structure-Searchable Toxicity (DSSTox) database contains curated chemical substances mapped to data including chemical identifiers (i.e., chemical synonyms, systematic names, CAS Registry Numbers and others) and, where appropriate, chemical structure representations. The goal for DSSTox is to accurately represent chemical substances, their structures and identifiers, as well as relevant chemical lists which are important to the environmental research and regulatory community.Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.17632/n5w8j6kpdc
title: HFSZEEMAN—A program for computing weak and intermediate field fine and hyperfine structure Zeeman splittings from MCDHF wave functions

description: Abstract Given electronic wave functions generated by the grasp2K relativistic atomic structure package, this program calculates diagonal magnetic dipole A_Jand electric quadrupole B_Jhyperfine interaction constants and Landé g_Jfactors. In addition the program computes diagonal and off-diagonal reduced hyperfine and Zeeman matrix elements and constructs the total interaction matrix for an atom in an external magnetic field. By diagonalizing the interaction matrix and plotting eigenvalues as fun... Title of program: HFSZEEMAN Catalogue Id: ADZS_v1_0 Nature of problem Prediction of weak and intermediate field Zeeman splittings of fine- and hyperfine structure levels using multiconfiguration Dirac-Hartree-Fock wave functions. Versions of this program held in the CPC repository in Mendeley Data ADZS_v1_0; HFSZEEMAN; 10.1016/j.cpc.2007.07.014 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/276f78wzsw
title: Quadrature of functions with endpoint singular and generalised polynomial behaviour in computational physics

description: Fast and accurate numerical integration always represented a bottleneck in high-performance computational physics, especially in large and multiscale industrial simulations involving Finite (FEM) and Boundary Element Methods (BEM). The computational demand escalates significantly in problems modelled by irregular or endpoint singular behaviours which can be approximated with generalised polynomials of real degree. This is due to both the practical limitations of finite-arithmetic computations and the inefficient samples distribution of traditional Gaussian quadrature rules. We developed a non-iterative mathematical software implementing an innovative numerical quadrature which largely enhances the precision of Gauss-Legendre formulae (G-L) for integrands modelled as generalised polynomial with the optimal amount of nodes and weights capable of guaranteeing the required numerical precision. This methodology avoids to resort to more computationally expensive techniques such as adaptive or composite quadrature rules. From a theoretical point of view, the numerical method underlying this work was preliminary presented in [1] by constructing the monomial transformation itself and providing all the necessary conditions to ensure the numerical stability and exactness of the quadrature up to machine precision. The novel contribution of this work concerns the optimal implementation of said method, the extension of its applicability at run-time with different type of inputs, the provision of additional insights on its functionalities and its straightforward implementation, in particular FEM applications or other mathematical software either as an external tool or embedded suite. The open-source, cross-platform C++ library Monomial Transformation Quadrature Rule (MTQR) has been designed to be highly portable, fast and easy to integrate in larger codebases. Numerical examples in multiple physical applications showcase the improved efficiency and accuracy when compared to traditional schemes.
DOI: 10.17632/b8fp5fr44v
title: Immediate glucose signaling transmitted via the vagus nerve in gut–brain neural communication

description: ・Transcranial_imaging_data file is the data corresponding to the main figures 2, 3, 6 and supplemental figure 1 in the paper. 
・Vagus_nerve_recording file ois the data corresponding to the main figures 1 and 6.
・Suppremental_fig_analyzed_data and main_fig_analyzed_data are the analyzed data of all figures in the paper.
DOI: 10.17632/m6g4c3hm9m
title: Patch for including ice shelf cavities ice shelf cavities in the unstructured-grid, Finite Volume Community Ocean Model

description: The patch for implementing iceshelf cavities into FVCOM4.0 consits of 1. A text file, git_diff_FVCOM4.0_iceshelf.txt, containing all the code modifications related to the inclusion of ice shelf cavities into FVCOM4.0 source code, generated by git diff. The FVCOM4.0 source code that has been used for this implementataion is published on https://gitlab.ecosystem-modelling.pml.ac.uk/fvcom/uk-fvcom/tags/FVCOM-v4.0. Alternatively, the source can also be obatined from the official FVCOM website http://fvcom.smast.umassd.edu/ and is available to all members of the FVCOM community. 2. A folder, R1CON, contains the input files, namelists and apps options to run the testcase R1CON. Do not hesitate to contact the authors for further instructions / help for applying FVCOM-ice-shelf applications!
DOI: 10.17632/bkf7w8jwb9
title: A hybrid approach combining DNS and RANS simulations to quantify uncertainties in turbulence modelling

description: RANS simulations and DNS simulations for the manuscript 'A hybrid approach combining DNS and RANS simulations to quantify uncertainties in turbulence modelling'. The simulations are validated using a data set which can be found at http://www.kbwiki.ercoftac.org/w/index.php/UFR_3-30_Test_Case.
DOI: 10.17632/yw2djp4vdg
title: Data for: Are the Con Artists Back? Deciphering Social Engineering Attacks

description: Social Engineering Attack Scenarios collected from various sources : News papers, Government advisories, Police education materials and interviews.
DOI: 10.17632/2492v2vkdg
title: Data for: Human occupation, slash-burning and vegetation response from the final Pleistocene to the middle Holocene, Daling River basin, NE China

description: this file is the pollen date of Chahai-1 section
DOI: 10.17632/35ffyd7msk
title: Development and Validation of the Social Skills Scale for Adolescent Students (SSS-A)

description: The data was collected for developing and validating social skills scale for adolescents. The participants of this study were 815 (442 secondary and 373 senior secondary) school students aged 13–18 years. The sample included 428 male and 387 female students. These students were from nine schools (5 private and 4 public) of U.P. state of India, selected randomly. Initially, the scale was administered on 850 students, but 35 students were excluded due to missing values on more than five items. To collect the data, the researchers contacted administrators of various schools and requested for permission to collect the data. The participation of the students was voluntary, and students were assured of the confidentiality of their responses. The data was collected during school hours.
DOI: 10.17632/pgrdmfyj44
title: Data for: QUALITATIVE PATTERN RECOGNITION IN CHEMISTRY: THEORETICAL BACKGROUND AND PRACTICAL GUIDELINES

description: Simulated dataset for multivariate unsupervised exploratory analysis and supervised classification. 30 samples, equally divided in 3 classes (10 samples per class), and described by 6 descriptor variables.
DOI: 10.17632/3rn4gjvvt2
title: QUBIT4MATLAB V3.0: A program package for quantum information science and quantum optics for MATLAB

description: Abstract A program package for MATLAB is introduced that helps calculations in quantum information science and quantum optics. It has commands for the following operations: (i) Reordering the qudits of a quantum register, computing the reduced state of a quantum register. (ii) Defining important quantum states easily. (iii) Formatted input and output for quantum states and operators. (iv) Constructing operators acting on given qudits of a quantum register and constructing spin chain Hamiltonians. (v) ... Title of program: QUBIT4MATLAB V3.0 Catalogue Id: AEAZ_v1_0 Nature of problem Subroutines helping calculations in quantum information science and quantum optics. Versions of this program held in the CPC repository in Mendeley Data AEAZ_v1_0; QUBIT4MATLAB V3.0; 10.1016/j.cpc.2008.03.007 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/g4ty6sb8tg
title: Multi-century subsidence data trims the wild edges off those dramatic, extreme sea level predictions we have all been fretting over

description: This dataset highlights the significant roles of anthropogenic subsidence and thermosteric effects in shaping relative sea levels in New York City. As the Earth's climate warms, ocean waters absorb heat, causing seawater to expand and sea levels to rise. Additionally, melting glaciers and ice sheets contribute extra water, further increasing sea levels. Subsidence, or land sinking, results from human activities (like groundwater and oil extraction, and urban development) and natural processes (such as tectonic movements). In coastal areas like New York City, subsidence greatly affects relative sea levels. Thus, it is crucial to consider both anthropogenic subsidence and thermosteric effects when discussing sea level changes in New York City. According to the Peltier Glacial Isostatic Adjustment (GIA)1 Model VM42, the subsidence rate in 1856, when The Battery's tide gauge started recording, was -0.870 mm/yr. Current measurements at The Battery based on the Global Positioning System (GPS)3 indicate a subsidence rate of -2.690 mm/yr since 20114. The average subsidence throughout observation is –1.780 mm/yr. The subsidence acceleration can be approximated as -0.0122 mm/yr². The proposed data set includes a curve constructed by using this information. By zeroing the absolute position of the tide gauge in 1856, the absolute position of the tide gauge is approximated as yTG,A=-5.6522E-03x2+2.0111E+01x-1.7855E+04 with x in years and yTG,A in mm.
Since 1856, the relative mean sea level at The Battery, Manhattan5,6, has risen at a rate of 2.925 mm/yr subjected to an acceleration of 0.0112 mm/yr². The proposed data set also includes this information. By zeroing the start of the recording in 1856, the relative position of the sea level is approximated as ySL,R=5.6947E-03x2-1.9173E+01x+1.5968E+04 with ySL,R in mm. 
Consequently, the absolute position of the sea level also included in the data set, is given by the sum of the two, ySL,A=yTG,A+ ySL,R=4.2485E-05x2+9.3766E-01x-1.8876E+03.
Based on the above figures, the thermosteric effect accounts for 2.925–1.780=1.145 mm/yr of sea level rise, and 0.01120-0.0122=-0.0010 mm/yr² of sea level acceleration (which is negative) since 1856. 
References 
1. agupubs.onlinelibrary.wiley.com/doi/10.1029/98RG02638
2. psmsl.org/train_and_info/geo_signals/gia/peltier/index.php
3. eos.org/science-updates/harnessing-the-gps-data-explosion-for-interdisciplinary-science 
4. geodesy.unr.edu/NGLStationPages/stations/NYBP.sta 
5. www.sealevel.info/MSL_graph.php?id=the+battery&quadratic=1&quad_ci=1&co2=0
6. psmsl.org/data/obtaining/rlr.monthly.data/12.rlrdata
DOI: 10.17632/njpwn2rdfx
title: Raw data of manuscript 'Integrated Microbiota-Bile Acid Analysis as Non-invasive Biomarkers for Ulcerative Colitis Staging Diagnose'

description: Background: Clinical staging diagnosis and progression tracking for ulcerative colitis (UC) is challenging as poor patient compliance of endoscopic biopsy. Here we perform a study that integrates metabolomic profiling, 16sRNA and metagenomic sequencing on serum and fecal samples from 23 active-state UC patients, 24 remission-state UC patients and 20 healthy volunteers from China, aiming to explore a non-invasive integrative biochemical index to quantitative track and monitor pathological activity of UC.
Results: Besides known associations of Fusobacterium nucleatum and Peptostreptococcus stomatis with UC, we found several bile acid-transforming species, including 7α- dehydroxygenase and 7α/β-dehydrogenase expressing microbiota, were significant correlated with UC pathological activity. We identified 7 microbial gene markers that differentiated active and remission-stage UC and healthy control microbiomes. Relevantly, reduced serum deoxycholic acid /cholic acid species ratio and increased fecal ursodeoxycholic acid/chenodeoxycholic acid ratio were associated with pathological activity of UC. Moreover, receiver operating characteristic analysis based on serum/fecal bile acids ratios was much accurate in prediction of active and remission stage outcome. 
Conclusions: This species-specific temporal change and bile acid dysregulation pattern linked to disease severity indicating that integrated microbiome-bile acid profile maybe implied for disease activity prediction, and that targeting microbiome-mediated restoring gut flora and bile acids homeostasis may be implicative of therapy efficacy. Collectively, these insights will help improve clinical diagnosis and optimize existing medical treatments.
DOI: 10.17632/v2p3th8pb5
title: Data for: Failure Analysis of Feed Water Pump Shaft in HRSG of 9F Gas Turbine Generator Unit

description: macrophotograph，fracture morphology，microstructure，mechanical property
DOI: 10.17632/hf233jr6tr
title: SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis | Wendisch, Dietrich, Mari, von Stillfried et al. 

description: COVID-19-induced ‘acute respiratory distress syndrome’ (ARDS) is associated with prolonged respiratory failure and high mortality, but the mechanistic basis of lung injury remains incompletely understood. Here, we analyzed pulmonary immune responses and lung pathology in two cohorts of patients with COVID-19 ARDS using functional single cell genomics, immunohistology and electron microscopy. We describe an accumulation of CD163-expressing monocyte-derived macrophages that acquired a profibrotic transcriptional phenotype during COVID-19 ARDS. Gene set enrichment and computational data integration revealed a significant similarity between COVID-19-associated macrophages and profibrotic macrophage populations identified in idiopathic pulmonary fibrosis. COVID-19 ARDS was associated with clinical, radiographic, histopathological, and ultrastructural hallmarks of pulmonary fibrosis. Exposure of human monocytes to SARS-CoV-2, but not Influenza A virus or viral RNA analogs, was sufficient to induce a similar profibrotic phenotype in vitro. In conclusion, we demonstrate that SARS-CoV-2 triggers profibrotic macrophage responses and pronounced fibroproliferative ARDS.
DOI: 10.17632/hmcw8jjpyw
title: Data for: Does government debt crowd out capital formation? A dynamic approach using panel VAR

description: Sources: IMF’s World Economic Outlook (WEO: PDDL-1.0), and World Bank’s World Development Indicators (WDI: CC by 4.0)
DOI: 10.17632/h6jhc3ynff
title: Efficacy of plant extracts against flower bean thrips data

description: The data sets collected were for effects of plant extracts on mortality of flower bean thrips and secondary metabolites of various aqueous plant extracts. The mortality induced by the plant extracts on the flower bean thrips data was collected in a period of 7 days post application. The data was collected in both laboratory and screenhouse trials. Phytochemical analysis for both qualitative and quantitative analysis data was taken. Quantitative data emphasized on the presence or absence of the major phytochemicals. The data collected through LC-MS analysis of the plant extracts targeted to quantify the concentration of phenolic, terpenoids, and organosulfur compounds in the plant extracts.
DOI: 10.17632/kfbcpxgdr9
title: De novo transcriptome assembly and functional annotation of the Atlantic bluefin tuna (Thunnus thynnus) larval stage

description: De novo transcriptome assembly and functional annotation of the Atlantic bluefin tuna larval stage. The dataset (Illumina HiSeq 2000, 100bp paired-end) was downloaded from the NCBI Sequence Read Archive (SRA Accession number: SRR1536893; BioProject PRJNA252566) and generated from a pool of several developmental stages (0 days post hatch - dph, 2dph, 10dph, 15dhp, 20dph).
DOI: 10.17632/wrrwnkb4yk
title: A meta-analysis of effects of anthropogenic disturbances on tropical mammal functional diversity

description: Data used to analyze the paper "A meta-analysis of effects of anthropogenic disturbances on tropical mammal functional diversity".
DOI: 10.17632/f8dykxfp2v
title: GAAM Argumentation Model in Hayes' Case

description: This data file consists of a detailed argumentation scheme and evaluation of the General and Actual Argument Model (GAAM) for the case of Robert Earl Hayes. This is the data that was used as the basis for the Chapter, "Argumentation Schemes, AI, & Criminal Justice: Evaluating Evidence in Miscarriages of Justice," in Data Governance for Justice & Human Rights: Forensics, Flow an Frontiers, for Bentham Science Books Current & Future Developments in Law Book Series. 

This data was gathered from court judgments and published news accounts of the investigations and trials of Robert Earl Hayes for the murder of two women. The data is separated into the six different scenarios put forward by defence and prosecution attorneys, and then organized into argumentation schemes. The arguments are then evaluated according to a method developed from Douglas Wilson and described in detail in the above chapter. The results of the argument evaluation assess the relative plausibility of the different scenarios, to determine the most plausible explanation for the evidence, as known in the case, at the time of evaluation.
DOI: 10.15468/dl.889me9
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (INSDC Sequences, FishBase Database)",
 "TaxonKey is Ptychochromis oligacanthus (Bleeker, 1868)"
 ]
}

 The dataset includes 137 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009138-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/992jz9h8x8
title: Data for: Metastatic Pattern Discriminates Survival Benefit of Primary Surgery for De Novo Stage IV Breast Cancer: A Real-World Observational Study

description: SEER database
DOI: 10.17632/cfyrmwsf8y
title: ITGB4 in Human A375 Melanoma Constricted Migration -- Imaging and Flow Cytometry Datasets

description: This data accompanies the iScience publication: Playter et al. 2025 "Deciphering Pre-existing and Induced 3D Genome Architecture Changes involved in Constricted Melanoma Migration". Preprint available at BioRxiv (see link below) and accepted manuscript (see link below) contain all detailed methods for reproducing the data and figures made from the raw data included here. The ITGB4Data_README.docx file explains all the data and files included.
These data support the investigation of changes in genome architecture associated with constricted migration. Metastatic cancer cells traverse constricted spaces that exert forces on their nucleus and the genomic contents within. Cancerous tumors are highly heterogeneous and not all cells within them can achieve such a feat. In this study, we investigated what initial genome architecture characteristics favor the constricted migratory ability of cancer cells and which arise only after passage through multiple constrictions. We identified a cell surface protein (ITGB4) whose expression correlates with increased initial constricted migration ability in human melanoma A375 cells. Sorting out this subpopulation allowed us to identify cellular and nuclear features that pre-exist and favor migration, as well as alterations that only appear after cells have passed through constrictions. Data deposited here show the raw data for each cell sorting and flow cytometry experiment labeling ITGB4, images showing the phenotype and nuclear shape of melanoma cells that express or do not express ITGB4, and data tracking the migration efficiency of these cell populations. Our study reveals 3D genome structure contributions to both selection and induction mechanisms of cell fate change during cancer metastasis.
DOI: 10.17632/3fth4cdmz7
title: Data for: Ways of the green tourist in Europe

description: Data for this analysis originate from the Flash Eurobarometer 432 “Preferences of Europeans towards Tourism, January 2016” (http://data.europa.eu/euodp/en/data/dataset/S2065_432_ENG) with information on travel patterns of European citizens. The dataset includes information on actual (outbound) travel by destination in 2015, accompanied by a wide range of socio-demographic and contextual factors. The survey includes individuals aged 15 years and older in the 28 European Union Member States, as well as in the Former Yugoslav Republic of Macedonia, Iceland, Turkey, Montenegro and Moldavia. In addition, there is information on actual holiday trips with at least one overnight stay and the motivation behind the choice of them. There are 30,000 observations in the dataset, among which 19,833 relate to individuals who undertook a holiday trip in 2015.
DOI: 10.17632/9tvmt9d8yj
title: f1: a code to compute Appell's F 1 hypergeometric function

description: Abstract In this work we present the FORTRAN code to compute the hypergeometric function F_1 (α,β_1 ,β _2 ,γ,x,y) of Appell. The program can compute the F_1function for real values of the variables {x,y}, and complex values of the parameters {α,β_1 ,β_2 ,γ}. The code uses different strategies to calculate the function according to the ideas outlined in [F.D. Colavecchia et al., Comput. Phys. Comm. 138 (1) (2001) 29]. Title of program: f1 Catalogue Id: ADSJ_v1_0 Nature of problem Computing the Appell F 1 function is relevant in atomic collisons and elementary particle physics. It is usually the result of multidimensional integrals involving Coulomb continuum states. Versions of this program held in the CPC repository in Mendeley Data ADSJ_v1_0; f1; 10.1016/S0010-4655(03)00490-9 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.27933333.v1
title: Cross-ancestry and sex-stratified genome-wide association analyses of amygdala and subnucleus volumes.

description: Multivariate GWASs for 21 amygdala volumetric traits were conducted using CGWAS, separately in the CHIMGEN and UKB datasets, and in cross-ancestry analyses with sex-combined data. A EUR-GWAS meta-analysis for the mean volume of the bilateral amygdala was conducted based on GWAS summary statistics (n = 48,634; including UKB and ENIGMA), and a cross-ancestry analysis for the same trait was performed with a total sample size of 55,557 (including UKB, ENIGMA and CHIMGEN).