cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8sry4728dk
title: The need to make surgical placement practices more circular for dental implants: Results of a Life Cycle Assessment study - Dataset

description: This dataset is linked to the eponymous manuscript "Life Cycle Assessment of a dental implant: from ore extraction to surgical placement". For further details, please read the manuscript or send an email to the first contributor at sylvain.maladiere.recherche@gmail.com.

The tables compile system inventory flows (per stage, step, and alternative system), and compositions for the modeled flows (e.g. medications).

The tables are composed by "material/process" lines, which are each linked to a process provider in the database. Each flow components are classified per material/process. This makes it easier to compose the system by aggregating flows into sums, linked to provider processes. 

The measures ("Measures") are in the unit of the provider, per item measured. The number ("Nb") referes to the amount of those items used in the table's moment. The coefficient ("Coef") referes to the proportion of flow used. To calculate the quantity of a flow component, do Measures x Nb x Coef.

For flows with a chemical composition (those whose provider names are followed by "conversion"), it was preferable to create their own ingredient proportion tables, named "composition's tables".

In the composition's tables, each ingredient ("Target ingredient") has its proportion in % on the same first line in the "Proportion" column. Some ingredients have a direct provider in the database, and have the same chemical in the "conversion ingredient (proxy)" column. Some do not have a direct associated provider :
- If possible, they are modeled by a individualization in several smaller chemicals which are provided in the database, with their proportion relative to the main chemical
- If a conversion ingredient is not provided in the database, we follow the finechem method applied for LCA and put under the ingredient another chemical as "proxy" preceded by an arrow (which is provided in the database), with a multiplier ratio ; the proxy chemical is multiplied by this ratio to simulate the environmental impact of the conversion chemical.

V2 : correction of the sensitivity analysis with the reinforced reuse in the Table 33, Table 34 and the Formula 1.

V3 : correction of the title and some table names.
DOI: 10.17632/9f2bncscrm
title: Spectra and models for Introduction and development of machine learning models for LIBS for thermonuclear fusion

description: Spectra and models for Introduction and development of machine learning models for LIBS for thermonuclear fusion
DOI: 10.17632/dwf7ccphpz
title: HMG-CoA reductase inhibitors inhibit pan-cancer epithelial-mesenchymal transition by targeting XBP1+ mast cells

description: HMG-CoA reductase inhibitors inhibit pan-cancer epithelial-mesenchymal transition by targeting XBP1+ mast cells
DOI: 10.17632/w88vrhrfp7
title: COVID-19 Dataset

description: This is some collections of COVID-19 comment from Twitter, YouTube, Facebook, and Instagram in Indonesian language. This dataset has been pre-processing with various stages :
1. Cleansing
2. Case folding
3. Text normalization
4. Stopword removal, and 
5. Stemming by Sastrawi
There are two folders in the file, in the form of csv and json. Each of the datasets has been split into train and test data with an 80:20 ratio.
DOI: 10.17632/2y2p9d4hjf
title: Data for: Impact of system structure on the performance of a hybrid thermal management system for a Li-ion battery module
DOI: 10.17632/dk5zrpmg2z
title: Velocity and pressure data for swirling flow in a confined sudden expansion with downstream resistance

description: An investigation into the effects of inlet offset on the flow in a confined sudden expansion with a downstream resistance has been performed. This dataset provides the experimental data obtained in the study. Dimensions of the test section is provided in the dataset. The downstream resistance was an uwashcoated diesel oxidation catalyst monolith substrate with a cell density of 400 cells-per-square-inch. 

The data consists of:
1. Hot-wire anemometry (HWA) data of the mean and fluctuating velocities at the test section inlet, an annular section with an outer-to-inner diameter ratio of 2.28.
2. Two-dimensional, two-component particle image velocimetry (PIV) data of the ensemble-averaged velocities within the confined sudden expansion.
3. Mean wall pressure data at the wall of the confined sudden expansion.
4. HWA data at the test section outlet, downtream of the resistance, of the mean velocities.

Data are presented in MATLAB .mat files. MATLAB .m script files are also provided as a minimal working example to use on the data.
DOI: 10.17632/hsmjkvd5sm
title: Butterfly Fish Dataset

description: This dataset consists of two types of data, conditioned butterfly fish image dataset and unconditioned butterfly fish image dataset. The conditioned data consists of 9 classes with a majority class of 44 data and a minority class of 9 data, with an average data size of 2.70 MB. , the fish were placed in a mini studio with a white cloth background and then photographed using a Cannon camera, then the unconditional data consisted of 14 classes with 307 data for the majority class and 34 data for the minority class, with an average data size of 1.78 MB, fish allowed to swim freely in a mini aquarium, and pictures were taken using an iPhone 11 camera.
DOI: 10.6084/m9.figshare.21203015.v3
title: Vector Data

description: Draft dataset associated with meta-analysis study.
DOI: 10.6084/m9.figshare.27936159.v1
title: SURVAY DATA

description: Dataset for reviewers
DOI: 10.6084/m9.figshare.8299529.v1
title: Sphaeroforma arctica transcriptome

description: These resulting predicted transcriptome and proteome were used by combining the original annotation and improved by using de novo transcriptome assembly. <br>The improvements are i) some previously fragmented gene models were merged together, ii) 5' and 3' UTR are there, and iii) lincRNA transcripts were identified.
DOI: 10.17632/7w3pmrwjd6
title: Data for: Development of a snow kernel to better model the anisotropic reflectance of pure snow in a kernel-driven BRDF model framework

description: 1. About the visulization tool for the RossThick-LiSparseReciprocal-Snow (RTLSRS for short) BRDF model. This is the description for the interface and operation of the # rtlsr_gui.sav application, which can be used to launch runtime IDL applications. Source code will be offerred on request from email: jiaozt@bnu.edu.cn. "Constrain" botton on this application interface inplements the function that does not allow negative model parameters, which are suggested by MODIS BRDF parameter product. 2. Environment：need to install IDL8.2 and above 3. Data format：this tool supports the input format of text file. The specific input format is requested as follows: the first line defines the number of multi-angle observations and the number of bands for the multi-angle input dataset, respectively. From the beginning of the second line, each line defines an observation with each sample representing the viewing and solar geometries (in degree) and the reflectances in different bands. Specifically, from left to right, each sample represents view zenith angle,view azimuth angle,solar zenith angle,view azimuth angle and the reflectance of each band in sequence. 4. The exemplary data A typical POLDER example was obtained in Apr. 2006 from the file "brdf_ndvi02.0216_3046.txt." in POLDER database. This pixel is located on the central North Greenland Ice Sheet (i.e., 52.1W, 78.03N) and was recorded to represent a relatively pure snow and ice IGBP class with a Normalized Difference Vegetation Index (NDVI) value of -0.03. This pixel incorporates more than 1,000 POLDER reflectances and 70 solar angles representing a very good BRDF sampling distribution. The method proposed by Breon (2005) should be utilized to correct the viewing geometry from the original POLDER measurements that offer two correction parameters (DVzC and DVzA), which was used in the paper. However, please note that this input example file including 6-band observations is not corrected for the viewing geometries. Input directory: contains an input example file, e.g., "brdf_ndvi02.0216_3046.txt". Output directory: contains the corresponding output example file, e.g.,"brdf_ndvi02.0216_3046_result.txt". 5. All validation data for the RTLSRS model are open and available to users following the details of the paper.
DOI: 10.17632/9prmvnns8m
title: Multi-Frequency Sine Wave Audio Dataset

description: This dataset contains 43,000 synthetic audio samples of 43 different sine waves frequencies from 20Hz to 10kHz. Each frequency includes 1,000 unique 5-second samples. 

Technical Specifications:
1. Format: Uncompressed 16-bit PCM WAV
2. Sample rate: 44.1 kHz (CD quality)
3. Amplitude: 0.5 (-6 dBFS normalization)
4. Frequencies: 20Hz to 10,000Hz
DOI: 10.17632/d8p53cv3ry
title: ER-directed TREX1 limits cGAS activation at micronuclei. Mohr et al.

description: Micronuclei are aberrant nuclear compartments that can form as a result of chromosome mis-segregation. Frequent loss of micronuclear envelope integrity exposes DNA to the cytoplasm, leading to chromosome fragmentation and immune activation. Here, we use micronuclei purification to show that the endoplasmic reticulum (ER)-associated nuclease TREX1 inhibits cGAS activation at micronuclei by degrading micronuclear DNA upon micronuclear envelope rupture. We demonstrate that the ER accesses ruptured micronuclei and plays a critical role in enabling TREX1 nucleolytic attack. TREX1 mutations, previously implicated in immune disease, untether TREX1 from the ER, disrupt TREX1 localization to micronuclei, diminish micronuclear DNA damage, and enhance cGAS activation. These results establish ER-directed resection of micronuclear DNA by TREX1 as a critical regulator of cytosolic DNA sensing in chromosomally unstable cells and provide a mechanistic basis for the importance of TREX1 ER tethering in preventing autoimmunity.
DOI: 10.17632/hc6wrbdwxh
title: The rise and fall of notoungulates: how Andean uplift, available land area, competition, and depredation driven its diversification dynamics

description: Supplementary data for all analyses carried out related with https://doi.org/10.1016/j.gr.2024.08.002
DOI: 10.17632/p6fb6htrm2
title: Weizmann shell model computational code

description: Title of program: WSMCC Catalogue Id: ABGN_v1_0 Nature of problem WSMCC is a computer program which carries out nuclear shell-model /spectroscopy) calculations. Given the total number of particles, total angular momentum and total isospin, the program calculates the energy levels and eigenstates as functions of the two-body matrix elements and the single particle energies. Versions of this program held in the CPC repository in Mendeley Data ABGN_v1_0; WSMCC; 10.1016/0010-4655(74)90060-5 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.14207417.v2
title: Depression, anxiety and the COVID-19 pandemic: Severity of symptoms and associated factors among university students after the end of movement lockdown

description: COVID-19 has struck the world by surprise since it began to spread as a novel viral infection in China in December 2020. In Malaysia, it only began to spread among the local population since March 2020 and resulting in movement lockdown imposed by the government from mid-March 2020 to June 2020. Although the movement lockdown was lifted in June 2020, academic activities in Malaysian universities are still restricted. Consequently, prevalence of psychological complications surge among the university students. Nevertheless, there is paucity of data on mental health status of university students in response to COVID-19 after the movement lockdown was lifted. This cross-sectional study aimed to fill the research gap by: (1) investigating the severity of depressive, anxiety, and psychological stress symptoms in response to the COVID-19 pandemic after the movement lockdown was lifted among a cohort of Malaysian university students and (2) determining the association between various COVID-19 stressors and religious coping, personal and clinical factors, social support, and the levels of depressive and anxiety symptoms. There was a total of 314 university students enrolled in this study. We found that the participants reported mild, moderate, and severe depression in the survey study i.e. at 14.3%, 11.8% and 8.9%, respectively. 6.1% of participants had mild anxiety, 16.2% had moderate anxiety, and 13.4% had severe to extremely severe anxiety. 24.8% of participants had mild stress, 9.6% had moderate stress, and 6.7% had severe to extremely severe stress. After adjusting for age and marital status, frustration due to loss of daily routine and study disruption, and history of pre-existing medical, depressive and anxiety disorders were associated with elevated depressive and anxiety symptoms, while those who enrolled in medicine-based courses and greater social support were associated with decreased depressive and anxiety symptoms. Based on our findings, we suggested a few points to improve the mental health of university students during an infection pandemic.
DOI: 10.6084/m9.figshare.23549925.v2
title: Data and R code for "Functional traits explain waterbirds’ host status, subtype richness, and community-level infection risk for avian influenza"

description: Species functional traits can influence several processes of pathogen transmission and, consequently, affect species’ host status, pathogen diversity, and community-level infection risk. In this study, we investigated, for 143 European waterbird species, the effects of functional traits on host status and pathogen diversity (subtype richness) for the avian influenza virus at the species level. We also explored the association between functional diversity and HPAI H5Nx occurrence at the community level for the 2016/17 and 2021/22 epidemics. This dataset contains datasets and R code files to replicate our analysis and results. Supplementary Dataset 1 is the data to replicate our analysis for host status and pathogen diversity (subtype richness) at the species level. Supplementary Dataset 2 is the data to replicate the analysis for the association between functional diversity and HPAI H5Nx occurrence at the community level. Supplementary Datasets 3 and 4 are the description data for Figure 1B and Figure 3 in the manuscript. Supplementary Codes 1 to 5 contain the R code to reproduce the analysis and figures. Supplementary phylogenetic birdtree contains the Hackett backbone phylogenetic tree of avian species.
DOI: 10.6084/m9.figshare.9730781.v1
title: consensus Tree 10kTrees Primates Version3 nex from Maternal investment, life histories and the evolution of brain structure in primates

description: Life history is a robust correlate of relative brain size: larger-brained mammals and birds have slower life histories and longer lifespans than smaller-brained species. The Cognitive buffer hypothesis (CBH) proposes an adaptive explanation for this relationship: large brains may permit greater behavioural flexibility and thereby buffer the animal from unpredictable environmental challenges, allowing for reduced mortality and increased lifespan. By contrast, the Developmental costs hypothesis (DCH) suggests that life-history correlates of brain size reflect the extension of maturational processes needed to accommodate the evolution of large brains, predicting correlations with pre-adult life-history phases. Here, we test novel predictions of the hypotheses in primates applied to the neocortex and cerebellum, two major brain structures with distinct developmental trajectories. While neocortical growth is allocated primarily to prenatal development, the cerebellum exhibits relatively substantial post-natal growth. Consistent with the DCH, neocortical expansion is related primarily to extended gestation while cerebellar expansion to extended post-natal development, particularly the juvenile period. Contrary to the CBH, adult lifespan explains relatively little variance in the whole brain or neocortex volume once pre-adult life-history phases are accounted for. Only the cerebellum shows a relationship with lifespan after accounting for developmental periods. Our results substantiate and elaborate on the role of maternal investment and offspring development in brain evolution, suggest that brain components can evolve partly independently through modifications of distinct developmental phases and imply that environmental input during post-natal maturation may be particularly crucial for the development of cerebellar function. They also suggest that relatively extended maturation times provide a developmental mechanism for the marked expansion of the cerebellum in the apes.
DOI: 10.6084/m9.figshare.21710066.v1
title: Gordonetal_2022_Ecological.Application_Data

description: The file shows all the raw datasets used in the manuscript " <strong>Elephant rewilding affects landscape openness and fauna habitat across a 92-year period</strong>", which is published in the journal <em>Ecological Applications</em>. <br> The metadata describing the data is shown in a seperate "tab".
DOI: 10.6084/m9.figshare.23692980.v2
title: repository files

description: Table S1. Presence/absence variant and genes in hap1 and hap2.
Table S2. Allele-specific expression genes (ASEGs) on haplotype chromosomes at five time
DOI: 10.6084/m9.figshare.26742208.v1
title: Facebook Misinformation in Canada, France, the United States, and United Kingdom

description: Data and replication files related to a study about social media platforms and misinformation. The data were gathered in February 2021 from an online panel in the US, Canada, UK, and France.
DOI: 10.6084/m9.figshare.5818185.v1
title: Psychopy experiment and associated files

description: Psychopy experiment file (requires version 1.83 for audio recording to function correctly).Instructions (in Instructions.xslx) and sentences to be read aloud (in Examples.xlsx) are stored in Excel files so that language can be specified.By typing a three-letter ISO code (e.g. English=eng, German=deu, Greek=ell, Spanish=spa), the language can be switched on each run of the experiment.<br>Required audio stimuli are uploaded separately.
DOI: 10.6084/m9.figshare.7647881.v1
title: ITS2 Mock community data

description: Fastq files containing sequence data from a mock community of 32 phylogenetically diverse fungal isolates. <br>
DOI: 10.6084/m9.figshare.9007256.v1
title: Purkiss and Lach raw data for review from Pathogen spillover from <i>Apis mellifera</i> to a stingless bee

description: For reviewers only--raw data for manuscript
DOI: 10.6084/m9.figshare.22687267.v1
title: Structure of human TRPV4 in complex with GTPase RhoA

description: Validation reports
DOI: 10.25573/serc.27161883.v1
title: Dataset: Fluxes of carbon dioxide, methane, and nitrous oxide and associated environmental data from estuarine wetlands in the Pacific Northwest, USA

description: In this dataset we provide fluxes of carbon dioxide, methane, and nitrous oxide as well as associated environmental data for 34 sites from five types of tidal and non-tidal wetlands in five estuaries in the Pacific Northwest. Wetland types included least-disturbed emergent marshes, restored marshes, least-disturbed tidal swamps, and wet and dry non-tidal agricultural areas, most of which were former tidal wetlands. Sampled estuaries were Coos Bay, Columbia River Estuary, Grays Harbor Estuary, Skagit River Estuary, and Padilla Bay. To measure greenhouse gas fluxes, we conducted light and dark flux measurements in six replicate chambers per site about eight times over the course of a year (spring 2021-spring 2022). At the time of flux measurements, we measured soil and air temperature and plant species composition and height inside chambers (to develop a biomass index), and groundwater salinity, pH and water level below the wetland surface in a small groundwater well for each pair of chambers. We measured wetland surface elevation at each flux chamber with RTK-GNSS or by leveling. Additionally, at a single station per site near the chambers, we obtained timeseries of soil temperature, groundwater level, groundwater temperature, and groundwater salinity. The data in this study underlie analyses of methane and nitrous oxide fluxes by Williams et al. (2024) and carbon dioxide fluxes (manuscript in preparation) and can also be used in support of other modeling and blue carbon data applications.
DOI: 10.6084/m9.figshare.22122701.v1
title: sciplex3

description: sci-Plex 3 perturbation dataset from Srivatsan et al. 2019, curated for perturbation modeling.
DOI: 10.6084/m9.figshare.27611781.v1
title: 2021-2023 CO2 flux and environmental factors data of the Dajiuhu peatland in Shennongjia, China

description: The CO2 flux, precipitation, groundwater depth, and temperature data of a typical subtropical mountain peatland.
DOI: 10.17632/7g2pxhx2rm
title: Data for: Epidemiology of painful knee after TKA in a tertiary care center. Assessment by decision-tree.

description: study about painful knee arthroplasties
DOI: 10.6084/m9.figshare.14605440.v1
title: data_code.rar

description: Provide the dataset and code for the building identification in Guangzhou.
DOI: 10.6084/m9.figshare.20537982.v1
title: Figure 1 clock gene expressions in 661W cells

description: qPCR CT values for circadian gene expressions in 661W cells
DOI: 10.6084/m9.figshare.22391707.v1
title: CZN_SoilCore.xlsx

description: This dataset includes soil core data from several coastal areas along the Delmarva Peninsulsa where marshes are migrating into coastal forests and/ or ag fields.
DOI: 10.6084/m9.figshare.25648728.v1
title: avana.filtered.ccle.variant.calls.vcf.gz

description: temp
DOI: 10.6084/m9.figshare.26190869.v1
title: Data for the Greater Bay Area, South China

description: Fundamental frequency, peak amplitude, and sediment thickness in the Greater Bay Area, South China.
DOI: 10.6084/m9.figshare.29128109.v1
title: Beach Litter, Beach Uses, and Coastal Oceanographic variables in Itamaracá - PE - Brazil

description: Dara about beach litter sampling, litter and beach wrack interaction, beach use, accommodation statistics focused on tourism, and meteo-oceanographic variables for Itamaracá island in four months (March, June, September, and December) 2022. Data available in the file BeachLitter_compiled_dataset_itamaraca.xlsxData dictionary with variable description and measurement units in the file data_dictionary_beach_litter_itamaraca.txt
DOI: 10.6084/m9.figshare.5394388.v2
title: Protein NMR spectroscopy: folded vs. unfolded protein

description: Figure showing the relationship between the 2D 1H-15N HSQC spectra of folded and unfolded proteins. The signal dispersion in the proton dimension is significantly diminished for unfolded proteins. Note that alpha-helix-rich proteins also exhibit low signal dispersion in the proton dimension; however, the example protein here contains mosts beta-strands, and therefore shows many signals &gt; 8.5 ppm.<br>The NMR spectra are of the same protein with the amino acid sequence indicated on the top. In the middle, left, the 2D 1H-15N HSQC spectrum of a folded 2x10 kDa dimer. On the right, the HSQC spectrum of the unfolded monomer. In both cases, the resonance from S156 is circled, with its position in the amino acid sequence indicated. On the bottom is the PDB file 4mjh depicting the structure of the folded dimer. On the bottom right is a structural model of an intrinsically disordered protein shown as an example. This was taken from the Protein Ensemble Database PED1AAD, with the number of residues trimmed to equal that of the folded structure (PDB 4mjh).