cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9740084
title: Additional file 7: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S5. pickCompProbes reference library probes using raw Lin reference. (CSV 307 kb)
DOI: 10.6084/m9.figshare.9740081
title: Additional file 6: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S4. pickCompProbes reference library probes using raw Gervin reference. (CSV 437 kb)
DOI: 10.6084/m9.figshare.9740075
title: Additional file 5: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S3. pickCompProbes reference library probes using raw Bakulski reference. (CSV 562 bytes)
DOI: 10.6084/m9.figshare.9740081.v1
title: Additional file 6: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S4. pickCompProbes reference library probes using raw Gervin reference. (CSV 437 kb)
DOI: 10.6084/m9.figshare.9740084.v1
title: Additional file 7: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S5. pickCompProbes reference library probes using raw Lin reference. (CSV 307 kb)
DOI: 10.6084/m9.figshare.9740063
title: Additional file 3: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S1. Overview of the sample filtering process. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.9740066
title: Additional file 4: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S2. pickCompProbes reference library probes using raw de Goede reference. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.9740075.v1
title: Additional file 5: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S3. pickCompProbes reference library probes using raw Bakulski reference. (CSV 562 bytes)
DOI: 10.6084/m9.figshare.9740063.v1
title: Additional file 3: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S1. Overview of the sample filtering process. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.9740066.v1
title: Additional file 4: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S2. pickCompProbes reference library probes using raw de Goede reference. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.9740048
title: Additional file 17: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S15. Cell estimates precision using IDOL and the references as published. Table S16. Cell estimates precision using IDOL and the filtered references. Table S17. Leave one out using IDOL and filtered references. Table S18. Cell estimates precision using IDOL optimized DMR and cleaned references. Table S19. Leave one out using IDOL optimized DMR and cleaned references. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9740039
title: Additional file 16: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S14. Cell estimates precision using pickCompProbes and the filtered references. (CSV 323 kb)
DOI: 10.6084/m9.figshare.9740039.v1
title: Additional file 16: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S14. Cell estimates precision using pickCompProbes and the filtered references. (CSV 323 kb)
DOI: 10.6084/m9.figshare.9740024
title: Additional file 14: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S12. IDOL reference library probes using filtered combined reference. (CSV 350 kb)
DOI: 10.6084/m9.figshare.9740027
title: Additional file 15: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S13. Cell estimates precision using pickCompProbes and the references as published. (CSV 412 kb)
DOI: 10.6084/m9.figshare.9740024.v1
title: Additional file 14: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S12. IDOL reference library probes using filtered combined reference. (CSV 350 kb)
DOI: 10.6084/m9.figshare.9740018
title: Additional file 3: of A meta-analysis of inpatient treatment outcomes of severe acute malnutrition and predictors of mortality among under-five children in Ethiopia

description: Table S1. Risk of Bias assessment Tool of Eligible Articles by using the Hoy 2012 tool (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9740027.v1
title: Additional file 15: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S13. Cell estimates precision using pickCompProbes and the references as published. (CSV 412 kb)
DOI: 10.6084/m9.figshare.9740018.v1
title: Additional file 3: of A meta-analysis of inpatient treatment outcomes of severe acute malnutrition and predictors of mortality among under-five children in Ethiopia

description: Table S1. Risk of Bias assessment Tool of Eligible Articles by using the Hoy 2012 tool (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9740012
title: Additional file 2: of Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut

description: Table S1. Summary of metagenomic sequencing of fecal samples from 12 individuals by PacBio and other sequencers. Table S2. Contigs generated from assembly of PacBio and short reads. Table S3. Distribution of read-depths and contig lengths in PacBio contigs of the three subjects. Table S4. Classification and characterization of 82 circular contigs &lt;1-Mb in PacBio assembly. Table S5. Functional annotation of the 71 plasmid CCs based on COGs. Table S6. Intra-similarity and length of terminal direct repeats (TDRs) of crAssphage linear genomes. Table S7. High-quality chromosome bins reconstructed from PacBio contigs. Table S8. Host prediction by similarity search of the 71 plasmid CCs for the public genome database. Table S9. Summary of host prediction of the 71 plasmid CCs. Table S10. Summary of host prediction of the 11 phage CCs. Table S11. Clusters of plasmids and phages, putative hosts, and the number of reads mapped to the clusters in the IGCJ dataset. Table S12. Estimation of ratio of plasmids and crAssphage per microbial chromosome in the IGCJ dataset. Table S13. COGs having significant difference in abundance between plasmids and reference genomes detected in the IGCJ dataset. Table S14. Resfams-based antibiotic resistance functions in plasmids detected in the IGCJ dataset. (XLSX 221 kb)
DOI: 10.6084/m9.figshare.9740015
title: Additional file 13: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S11. pickCompProbes reference library probes using filtered combined reference. (CSV 368 kb)
DOI: 10.6084/m9.figshare.9740012.v1
title: Additional file 2: of Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut

description: Table S1. Summary of metagenomic sequencing of fecal samples from 12 individuals by PacBio and other sequencers. Table S2. Contigs generated from assembly of PacBio and short reads. Table S3. Distribution of read-depths and contig lengths in PacBio contigs of the three subjects. Table S4. Classification and characterization of 82 circular contigs &lt;1-Mb in PacBio assembly. Table S5. Functional annotation of the 71 plasmid CCs based on COGs. Table S6. Intra-similarity and length of terminal direct repeats (TDRs) of crAssphage linear genomes. Table S7. High-quality chromosome bins reconstructed from PacBio contigs. Table S8. Host prediction by similarity search of the 71 plasmid CCs for the public genome database. Table S9. Summary of host prediction of the 71 plasmid CCs. Table S10. Summary of host prediction of the 11 phage CCs. Table S11. Clusters of plasmids and phages, putative hosts, and the number of reads mapped to the clusters in the IGCJ dataset. Table S12. Estimation of ratio of plasmids and crAssphage per microbial chromosome in the IGCJ dataset. Table S13. COGs having significant difference in abundance between plasmids and reference genomes detected in the IGCJ dataset. Table S14. Resfams-based antibiotic resistance functions in plasmids detected in the IGCJ dataset. (XLSX 221 kb)
DOI: 10.6084/m9.figshare.9740015.v1
title: Additional file 13: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S11. pickCompProbes reference library probes using filtered combined reference. (CSV 368 kb)
DOI: 10.6084/m9.figshare.9740003
title: Additional file 2: of Variable genome evolution in fungi after transposon-mediated amplification of a housekeeping gene

description: All_hAT_consensus.txt Consensus sequences of the hAT elements in the genomes of the seven Dothideomycetes Cercospora zeae-maydis (Czm), Pseudocercospora eumusae (Peu), P. musae (Pmu), Sphaerulina musiva (Smu), S. populicola (Spo), P. fijiensis (Pfi) and Pyrenophora tritici-repentis (Ptr) in fasta format. (TXT 44 kb)
DOI: 10.6084/m9.figshare.9740006
title: Additional file 12: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S10. pickCompProbes reference library probes using filtered Lin reference. (CSV 309 kb)
DOI: 10.6084/m9.figshare.9740003.v1
title: Additional file 2: of Variable genome evolution in fungi after transposon-mediated amplification of a housekeeping gene

description: All_hAT_consensus.txt Consensus sequences of the hAT elements in the genomes of the seven Dothideomycetes Cercospora zeae-maydis (Czm), Pseudocercospora eumusae (Peu), P. musae (Pmu), Sphaerulina musiva (Smu), S. populicola (Spo), P. fijiensis (Pfi) and Pyrenophora tritici-repentis (Ptr) in fasta format. (TXT 44 kb)
DOI: 10.6084/m9.figshare.9739991
title: Additional file 1: of Variable genome evolution in fungi after transposon-mediated amplification of a housekeeping gene

description: Table S1. Transition/Transversion (Ti/Tv) ratio of the original histone H3 CDS sequences when compared to the outgroup species D. septosporum that lacks a transduplication event. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9739985
title: Additional file 10: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S8. pickCompProbes reference library probes using filtered Bakulski reference. (CSV 414 kb)
DOI: 10.6084/m9.figshare.9739988
title: Additional file 11: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S9. pickCompProbes reference library probes using filtered Gervin reference. (CSV 437 kb)
DOI: 10.6084/m9.figshare.9740006.v1
title: Additional file 12: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S10. pickCompProbes reference library probes using filtered Lin reference. (CSV 309 kb)
DOI: 10.6084/m9.figshare.9739988.v1
title: Additional file 11: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S9. pickCompProbes reference library probes using filtered Gervin reference. (CSV 437 kb)
DOI: 10.6084/m9.figshare.9739985.v1
title: Additional file 10: of Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

description: Table S8. pickCompProbes reference library probes using filtered Bakulski reference. (CSV 414 kb)
DOI: 10.6084/m9.figshare.9739991.v1
title: Additional file 1: of Variable genome evolution in fungi after transposon-mediated amplification of a housekeeping gene

description: Table S1. Transition/Transversion (Ti/Tv) ratio of the original histone H3 CDS sequences when compared to the outgroup species D. septosporum that lacks a transduplication event. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9739943
title: Additional file 1: of The Daily Mile as a public health intervention: a rapid ethnographic assessment of uptake and implementation in South London, UK

description: Semi-structured interview and focus group schedules. (ZIP 69 kb)
DOI: 10.6084/m9.figshare.9739943.v1
title: Additional file 1: of The Daily Mile as a public health intervention: a rapid ethnographic assessment of uptake and implementation in South London, UK

description: Semi-structured interview and focus group schedules. (ZIP 69 kb)
DOI: 10.6084/m9.figshare.9739925
title: Additional file 1: of A small dose of remifentanil pretreatment suppresses sufentanil-induced cough during general anesthesia induction: a randomized, double-blind, placebo-controlled trial

description: Original data. This is the dataset supporting the conclusions of this article, including demographic characteristics, severity of cough, hemodynamic changes and side effects or unintended effects. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9739925.v1
title: Additional file 1: of A small dose of remifentanil pretreatment suppresses sufentanil-induced cough during general anesthesia induction: a randomized, double-blind, placebo-controlled trial

description: Original data. This is the dataset supporting the conclusions of this article, including demographic characteristics, severity of cough, hemodynamic changes and side effects or unintended effects. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9739826
title: Additional file 9: of Temporal and partial inhibition of GLI1 in neural stem cells (NSCs) results in the early maturation of NSC derived oligodendrocytes in vitro

description: GO significantly downregulated in GANT61-OPCs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9739820
title: Additional file 8: of Temporal and partial inhibition of GLI1 in neural stem cells (NSCs) results in the early maturation of NSC derived oligodendrocytes in vitro

description: GO terms that were found to be significantly enriched in the GANT61-OPCs. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9739817
title: Additional file 7: of Temporal and partial inhibition of GLI1 in neural stem cells (NSCs) results in the early maturation of NSC derived oligodendrocytes in vitro

description: Upregulated and downregulated genes. (XLSX5 31 kb)
DOI: 10.6084/m9.figshare.9739820.v1
title: Additional file 8: of Temporal and partial inhibition of GLI1 in neural stem cells (NSCs) results in the early maturation of NSC derived oligodendrocytes in vitro

description: GO terms that were found to be significantly enriched in the GANT61-OPCs. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9739826.v1
title: Additional file 9: of Temporal and partial inhibition of GLI1 in neural stem cells (NSCs) results in the early maturation of NSC derived oligodendrocytes in vitro

description: GO significantly downregulated in GANT61-OPCs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9739817.v1
title: Additional file 7: of Temporal and partial inhibition of GLI1 in neural stem cells (NSCs) results in the early maturation of NSC derived oligodendrocytes in vitro

description: Upregulated and downregulated genes. (XLSX5 31 kb)
DOI: 10.6084/m9.figshare.9739730
title: Symptomatic Aortic Valve Mass - Cardiac Work-Up Challenges and Role of Computed Tomography Angiography: A Case Report

description: Abstract Cardiac papillary fibroelastoma are rare, benign cardiac tumors that may lead to lethal complications from embolization or valvular dysfunction if left untreated. When working up symptomatic tumors with concomitant angina, traditional diagnostic studies such as cardiac catheterization may predispose the patient to embolic complications if the mass is located in the path of the catheter. Newer, non-invasive diagnostic testing, such as cardiac magnetic resonance imaging or dynamic computed tomography angiography, may be considered in lieu of invasive approaches to avoid potentially devastating complications. We herein present a case report of a 77-year-old female with a symptomatic aortic valve tumor and describe our diagnostic strategy and management.
DOI: 10.6084/m9.figshare.9739748
title: Hydrodynamic modelling for monitoring hydrological regimes of key wetlands in Zhalong Nature Reserve, China

description: The modelled inundation extents and water levels dataset have been uploaded with the *.dfs2 file which can be browsed with the DHI software (https://worldwide.dhigroup.com/us/?redirect=www.dhi.us). And the evaluation dataset have been added as one evaluation.xls file which contained six sheets named Tumuke5.01-5.31、Kertai5.01-5.31....<br>
DOI: 10.6084/m9.figshare.9739730.v1
title: Symptomatic Aortic Valve Mass - Cardiac Work-Up Challenges and Role of Computed Tomography Angiography: A Case Report

description: Abstract Cardiac papillary fibroelastoma are rare, benign cardiac tumors that may lead to lethal complications from embolization or valvular dysfunction if left untreated. When working up symptomatic tumors with concomitant angina, traditional diagnostic studies such as cardiac catheterization may predispose the patient to embolic complications if the mass is located in the path of the catheter. Newer, non-invasive diagnostic testing, such as cardiac magnetic resonance imaging or dynamic computed tomography angiography, may be considered in lieu of invasive approaches to avoid potentially devastating complications. We herein present a case report of a 77-year-old female with a symptomatic aortic valve tumor and describe our diagnostic strategy and management.
DOI: 10.6084/m9.figshare.9739733
title: Sampling frequency to estimate cumulative nitrous oxide emissions from the soil

description: Abstract: The objective of this work was to assess the influence of gas sampling frequency on the cumulative emissions of nitrous oxide (N2O) from the soil. Gas emissions were assessed over a period of two years (2014-2016), in four systems: eucalyptus forestry, crops, pasture, and native forest. The cumulative emissions of N2O were calculated at sampling intervals of 7, 14, and 21 days. The sampling intervals did not influence the final results of cumulative N2O emissions from the soil in the assessed systems.
DOI: 10.6084/m9.figshare.9739748.v1
title: Hydrodynamic modelling for monitoring hydrological regimes of key wetlands in Zhalong Nature Reserve, China

description: The modelled inundation extents and water levels dataset have been uploaded with the *.dfs2 file which can be browsed with the DHI software (https://worldwide.dhigroup.com/us/?redirect=www.dhi.us). And the evaluation dataset have been added as one evaluation.xls file which contained six sheets named Tumuke5.01-5.31、Kertai5.01-5.31....<br>
DOI: 10.6084/m9.figshare.9739733.v1
title: Sampling frequency to estimate cumulative nitrous oxide emissions from the soil

description: Abstract: The objective of this work was to assess the influence of gas sampling frequency on the cumulative emissions of nitrous oxide (N2O) from the soil. Gas emissions were assessed over a period of two years (2014-2016), in four systems: eucalyptus forestry, crops, pasture, and native forest. The cumulative emissions of N2O were calculated at sampling intervals of 7, 14, and 21 days. The sampling intervals did not influence the final results of cumulative N2O emissions from the soil in the assessed systems.
DOI: 10.6084/m9.figshare.9739727
title: Prevalence of falls and associated factors in community-dwelling older Brazilians: a systematic review and meta-analysis

description: Falls determine huge epidemiological, clinical, and economic burden in the older population worldwide, presenting high odds of severe disability. The present study aimed to estimate the prevalence of falls and associated factors in older Brazilians using a systematic review with meta-analysis. Searches were performed in SciELO, PubMed, LILACS, Web of Science, Scopus and PsycINFO databases with no date or language restrictions. Studies on community-dwelling older persons aged ≥ 60 years from both sexes and with a sample size of ≥ 300 participants included. Exclusion criteria were studies conducted specifically for older adults diagnosed with chronic disabling diseases that predispose them to falls. Risk of bias of included studies was assessed using a critical appraisal tool focusing on prevalence designs. A random-effects meta-analysis was used to pool the prevalence of falls across studies. Exploratory analysis was conducted examining subgroup estimates, prevalence ratios and meta-regression. Thirty-seven studies involving 58,597 participants were included. Twelve-month prevalence of falls was 27% (95%CI: 24.3-30.0), with significantly higher estimates in female than male (PR = 1.57; 95%CI: 1.32-1.86), in age group ≥ 80 years than age group 60-69 years (PR = 1.46; 95%CI: 1.15-1.84), and in participants from the Central region than participants from the South region (PR = 1.36; 95%CI: 1.10-1.69) of Brazil. Risk of bias scores did not impact heterogeneity in the 12-month meta-analysis. These estimates strongly support evidence-based public interventions to prevent falls in older Brazilians, especially in women and the oldest-old population.
DOI: 10.6084/m9.figshare.9739727.v1
title: Prevalence of falls and associated factors in community-dwelling older Brazilians: a systematic review and meta-analysis

description: Falls determine huge epidemiological, clinical, and economic burden in the older population worldwide, presenting high odds of severe disability. The present study aimed to estimate the prevalence of falls and associated factors in older Brazilians using a systematic review with meta-analysis. Searches were performed in SciELO, PubMed, LILACS, Web of Science, Scopus and PsycINFO databases with no date or language restrictions. Studies on community-dwelling older persons aged ≥ 60 years from both sexes and with a sample size of ≥ 300 participants included. Exclusion criteria were studies conducted specifically for older adults diagnosed with chronic disabling diseases that predispose them to falls. Risk of bias of included studies was assessed using a critical appraisal tool focusing on prevalence designs. A random-effects meta-analysis was used to pool the prevalence of falls across studies. Exploratory analysis was conducted examining subgroup estimates, prevalence ratios and meta-regression. Thirty-seven studies involving 58,597 participants were included. Twelve-month prevalence of falls was 27% (95%CI: 24.3-30.0), with significantly higher estimates in female than male (PR = 1.57; 95%CI: 1.32-1.86), in age group ≥ 80 years than age group 60-69 years (PR = 1.46; 95%CI: 1.15-1.84), and in participants from the Central region than participants from the South region (PR = 1.36; 95%CI: 1.10-1.69) of Brazil. Risk of bias scores did not impact heterogeneity in the 12-month meta-analysis. These estimates strongly support evidence-based public interventions to prevent falls in older Brazilians, especially in women and the oldest-old population.