cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.m9m5va
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((31.37405 3.54954,25.95267 7.04818,12.20561 7.43233,10.26941 2.99862,9.88217 -0.48517,13.17372 -5.51079,20.04724 -7.07924,30.59956 -8.23059,34.47197 -11.18837,39.60292 -10.71313,38.73163 -5.63605,42.02317 -0.51421,41.15188 4.51523,35.34327 5.28688,31.37405 3.54954))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Glycine max (L.) Merr."
 ]
}

 The dataset includes 23 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039737-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzrpqx
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Zosterops stresemanni Mayr, 1931"
 ]
}

 The dataset includes 72 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000469-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwxpre
title: Occurrence Download

description: A dataset containing 4807 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Nigrita fusconotus Fraser, 1843"
 ]
}

 The dataset includes 4807 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038206-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqwmsu
title: Occurrence Download

description: A dataset containing 95616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conyza canadensis (L.) Cronquist",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 95616 records from 419 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009841-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjprwv
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Phrynobatrachus jimzimkusi Zimkus, Gvozdík & Gonwouo, 2013"
 ]
}

 The dataset includes 66 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048130-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.twdnbf
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Leucopeza semperi P.L.Sclater, 1876"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038249-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g10qly
title: Occurrence Download

description: A dataset containing 420 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Renealmia mexicana Klotzsch ex Petersen"
 ]
}

 The dataset includes 420 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009842-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hgz6z
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia albobracteata Ridl."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048139-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ti4fh
title: Occurrence Download

description: A dataset containing 5875 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chrysomya Robineau-Desvoidy, 1830"
 ]
}

 The dataset includes 5875 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007928-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gds28a
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elymus viridulus (Keng & S.L.Chen) S.L.Chen"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038193-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7nx5c
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Limnonectes taylori Matsui, Panha, Khonsue & Kuraishi, 2010"
 ]
}

 The dataset includes 76 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048029-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e0xs64
title: Occurrence Download

description: A dataset containing 78292 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taxus L."
 ]
}

 The dataset includes 78292 records from 615 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007924-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.js3emp
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Drypetes viridis Airy Shaw"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038178-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcjpr9
title: Occurrence Download

description: A dataset containing 266 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Phrynobatrachus dispar (Peters, 1870)"
 ]
}

 The dataset includes 266 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048163-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9ykpa
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elymus yangiae B.Rong Lu"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038203-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oez0go
title: Occurrence Download

description: A dataset containing 1452 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Araucaria araucana (Molina) K.Koch"
 ]
}

 The dataset includes 1452 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007932-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.trdzbc
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bethencourtia palmensis (Nees) Choisy"
 ]
}

 The dataset includes 85 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048162-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5ep6c
title: Occurrence Download

description: A dataset containing 9828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN, VU, NT, LC)",
 "OccurrenceStatus is Present",
 "TaxonKey is Magnoliopsida",
 "Year is 2023"
 ]
}

 The dataset includes 9828 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038196-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o5tw84
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlomis bourgaei Boiss."
 ]
}

 The dataset includes 12 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007923-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v426zj
title: Occurrence Download

description: A dataset containing 6547 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picea rubens Sarg."
 ]
}

 The dataset includes 6547 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039738-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hupxse
title: Occurrence Download

description: A dataset containing 1339 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventory of Bassila, Pénéssoulou, Wari maro, Djigbé, Lama and Bonou forests (Benin)"
 ]
}

 The dataset includes 1339 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007939-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygcuyq
title: Occurrence Download

description: A dataset containing 1987 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Zosterops semperi Hartlaub, 1868"
 ]
}

 The dataset includes 1987 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038202-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hkswe
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crepidula lessonii (Broderip, 1834)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 138 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048075-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ibrxlp
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wollemia nobilis W.G.Jones et al."
 ]
}

 The dataset includes 218 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007940-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z3xjtv
title: Occurrence Download

description: A dataset containing 8679 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CAN.4_1, CAN.7_1, CAN.10_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Trichoptera"
 ]
}

 The dataset includes 8679 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023039-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14839593
title: unimpeded: klcdm bicep_keck_2018+planck_2018_plik_nolens

description: cosmological model:klcdm, dataset:bicep_keck_2018+planck_2018_plik_nolens
DOI: 10.5281/zenodo.14839594
title: unimpeded: klcdm bicep_keck_2018+planck_2018_plik_nolens

description: cosmological model:klcdm, dataset:bicep_keck_2018+planck_2018_plik_nolens
DOI: 10.15468/dl.yhkrrh
title: Occurrence Download

description: A dataset containing 85141 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Canada, Mexico)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Papilio polyxenes Fabricius, 1775",
 "Year 1950-2025"
 ]
}

 The dataset includes 85141 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023040-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5j960n87
title: MassIVE MSV000097091 - Mitochondria Run - Optimization protocol
title: Metabolomics study using mice whole tissue and isolated mitochondria.
DOI: 10.15468/dl.bfpvxp
title: Occurrence Download

description: A dataset containing 2819521 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "OccurrenceStatus is Present",
 "TaxonKey is Mollusca",
 "Year 1880-2025"
 ]
}

 The dataset includes 2819521 records from 519 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023034-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15472/rge7cp
title: Aislamiento de hongos microscópicos ambientales en áreas forestales de la UDES

description: El presente proyecto busca explorar la diversidad de hongos filamentosos cultivables en el ecosistema local de la Universidad de Santander; este estudio fue esencial para entender el papel de los hongos en la descomposición de materia orgánica y de cómo contribuyen al equilibrio ecológico. El proyecto se desarrolló en cuatro fases: aislamiento de hongos, caracterización macro y microscópica, evaluación del crecimiento micelial e interpretación bibliográfica; las muestras se recolectaron con un muestreador de aire MAS-100 ECO, tomado 60 litros de aire en medios de cultivo OGY+ 0,05mg/L de cloranfenicol, se observaron las estructuras fúngicas bajo el microscopio para identificar los géneros presentes. Se evaluó el crecimiento en diferentes medios de cultivo y se analizó el rol ecológico de los hongos aislados.

Los resultados incluyeron la identificación de 4 géneros: Penicillium sp, Absidia sp, Aspergillus sp y Curvularia sp. y la creación de un recurso documental en la plataforma SIB, proporcionando una base para futuras investigaciones y la conservación de los ecosistemas forestales locales.
DOI: 10.6073/pasta/8a11c976fa30bc196a96ef6ab8f2bfa8
title: Daily measurement summaries from Howard Glacier Meteorological Station (HODM), McMurdo Dry Valleys, Antarctica (1993-2022, ongoing)

description: As part of the McMurdo Dry Valleys Long Term Ecological Research program, meteorological data are collected from various locations throughout the McMurdo Dry Valleys of Antarctica. This package contains daily measurement summaries derived from 15-minute data generated by the Howard Glacier Meteorological Station (HODM), located in Taylor Valley (Latitude: -77.67121, Longitude: 163.07732, Elevation: 472 meters above sea level). HODM was established in 1993, during the 93/94 field season.
DOI: 10.15468/dl.4zpz77
title: Occurrence Download

description: A dataset containing 13216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-186.53271 -1.47574,-9.67244 -1.47574,-9.67244 69.23494,-186.53271 69.23494,-186.53271 -1.47574))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eurytides marcellus (Cramer, 1777)",
 "Year 1950-2024"
 ]
}

 The dataset includes 13216 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023041-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14839595
title: unimpeded: wlcdm bao.sdss_dr16+planck_2018_CamSpec

description: cosmological model:wlcdm, dataset:bao.sdss_dr16+planck_2018_CamSpec
DOI: 10.5281/zenodo.14839596
title: unimpeded: wlcdm bao.sdss_dr16+planck_2018_CamSpec

description: cosmological model:wlcdm, dataset:bao.sdss_dr16+planck_2018_CamSpec
DOI: 10.21227/pgh4-zm86
title: 11-bus and 240-bus radial distribution feeder datasets for power flow calculation

description: This dataset includes the system data and equivalent Distributed Energy Resource (DER) allocations for two test cases: an 11-bus system and a 240-bus radial test feeder. The 11-bus system data is based on the CIGRE Technical Report "Benchmark system for network integration of renewable and distributed energy resources," 575, 2014. The 240-bus is based on the test system described in the paper titled "A time-series distribution test system based on real utility data" by F. Bu, Y. Yuan, Z. Wang, K. Dehghanpour, and A. Kimber, 2019 NAPS Conference, 2019. This dataset aims to help researchers model radial distribution systems and test methodologies for integrating and managing DERs to enhance steady-state analyses.
DOI: 10.5281/zenodo.14839568
title: unimpeded: klcdm bao.sdss_dr16+planck_2018_plik

description: cosmological model:klcdm, dataset:bao.sdss_dr16+planck_2018_plik
DOI: 10.5281/zenodo.14839569
title: unimpeded: klcdm bao.sdss_dr16+planck_2018_plik

description: cosmological model:klcdm, dataset:bao.sdss_dr16+planck_2018_plik
DOI: 10.5281/zenodo.10651458
title: PPIRef

description: PPIRef is a dataset of 3D structures of protein-protein interfaces. See the GitHub repository for more details.

 

File description



ppi_6A.zip stores the PPIRef dataset: .pdb files with all 6A-distance interfaces from PDB as of Jan 2024.

ppi_6A_stats.zip stores the statistics about the ppi_6A dataset. This includes the indexes for fast search with MMseqs2 and iDist, as well as a .csv file with main statistics for all interfaces.

ppi_10A.zip: .pdb files with all 10A-distance interfaces from PDB downloaded in June 2024.

ppi_10A_stats.zip stores the statistics about the ppi_10A dataset. This includes iDist embeddings, as well as a .csv file with main statistics for all interfaces.

pdb_redo_ppi_10A.zip: .pdb files with all 10A-distance interfaces from PDB-REDO downloaded in June 2024.

pdb_redo_ppi_10A_stats.zip stores the statistics about the pdb_redo_ppi_10A dataset. This includes iDist embeddings, as well as a .csv file with main statistics for all interfaces.

skempi2.zip stores PPI interfaces from the SKEMPI v2.0 dataset

benchmark_similarity_6A.zip: Results of benchmarking methods to calculate pairwise PPI similarity. The comparisons were performed on 2M 6A-interfaces. The directory contains results of iAlign and iDist. Please note that some values for iAlign are missing due to iAlign errors. Please see this GitHub issue for details of the benchmark construction.


How to useIt is recommended to download and extract the files in the PPIRef/ppiref/data/ppiref directory. This can be done automatically via the ppiref package. For example, to download and extract the ppi_6A.zip archive run:from ppiref.utils.misc import download_from_zenododownload_from_zenodo('ppi_6A.zip')
DOI: 10.5281/zenodo.10651459
title: PPIRef

description: PPIRef is a dataset of 3D structures of protein-protein interfaces. See the GitHub repository for more details.

 

ppi_6A.zip stores the PPIRef dataset: .pdb files with all 6A-distance interfaces from PDB as of Jan 2024.

ppi_6A_stats.zip stores the statistics about the dataset. This includes the indexes for fast search with MMseqs2 and iDist, as well as a .csv file with some statistics for all interfaces.
DOI: 10.5281/zenodo.10697420
title: PPIRef

description: PPIRef is a dataset of 3D structures of protein-protein interfaces. See the GitHub repository for more details.

 

File description

ppi_6A.zip stores the PPIRef dataset: .pdb files with all 6A-distance interfaces from PDB as of Jan 2024.

ppi_6A_stats.zip stores the statistics about the dataset. This includes the indexes for fast search with MMseqs2 and iDist, as well as a .csv file with main statistics for all interfaces.

ppi_10A.zip TBD

ppi_10A_stats.zip TBD

How to useIt is recommended to download and extract the files in the PPIRef/ppiref/data/ppiref directory. This can be done automatically via the ppiref package. For example, to download and extract the ppi_6A.zip archive run:from ppiref.utils.misc import download_from_zenododownload_from_zenodo('ppi_6A.zip')