cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3632327_d9
title: Additional file 8: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ  infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

description: Repeat analysis. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3632339_d4
title: MOESM2 of Conservation and divergence of bHLH genes in the calcisponge Sycon ciliatum

description: Additional file 2. Multiple alignment used for the phylogenetic analysis.
DOI: 10.6084/m9.figshare.c.3632324_d11
title: Additional file 6: of Identification of molecular signatures specific for distinct cranial sensory ganglia in the developing chick

description: Differential expression analysis results for all pairwise comparisons between ganglia using both DESeq (i) and EdgeR (ii). Data are available as compiled .xlsx spreadsheets (A) or individual .csv files (B). (ZIP 24942 kb)
DOI: 10.6084/m9.figshare.c.3632327_d10
title: Additional file 13: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ  infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

description: Dispensable scaffold predictions in Fom -5190, Foc -38-1 and Fop -37622. (XLS 2255 kb)
DOI: 10.6084/m9.figshare.c.3632339_d6
title: MOESM3 of Conservation and divergence of bHLH genes in the calcisponge Sycon ciliatum

description: Additional file 3. Matrix of gene expression levels calculated as sums of the posterior probability of each read coming from a given gene over all reads (expected_count metrics calculated with the RSEM package). First row: sample names, second row: replica names (reflecting names of the source RNASeq libraries), first column: gene identifiers.
DOI: 10.6084/m9.figshare.c.3632357_d1
title: MOESM2 of Genetic diversity of Plasmodium falciparum in human malaria cases in Mali

description: Additional file 2. Microsatellite data of the genotyped samples. The allele length (in base pairs) for each Plasmodium falciparum tested loci (Poly α, TA109, TA1, TA81, TA42, ARA2, PfPK2, Pfg377) is provided. The empty cells of the Table correspond to negative loci.
DOI: 10.6084/m9.figshare.c.3632339_d7
title: MOESM1 of Conservation and divergence of bHLH genes in the calcisponge Sycon ciliatum

description: Additional file 1. Sequences of all the identified Sycon bHLH proteins.
DOI: 10.6084/m9.figshare.c.3632327_d13
title: Additional file 21: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ  infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

description: Properties of predicted Fop-37622 genes/proteins. (XLSX 4021 kb)
DOI: 10.6084/m9.figshare.c.3632564_d2
title: Additional file 2: of Metagenomic analysis of the microbiota in the highly compartmented hindguts of six wood- or soil-feeding higher termites

description: Supplemental tables. Microsoft Excel file containing three sheets (Tables S1â  3) that contain the abundance and taxonomic information of iTag, COG, and protein-coding genes. (XLSX 3094 kb)
DOI: 10.6084/m9.figshare.c.3632573_d1
title: MOESM1 of Oral administration of Lactobacillus plantarum 299v modulates gene expression in the ileum of pigs: prediction of crosstalk between intestinal immune cells and sub-mucosal adipocytes

description: Supplementary material 1 (XLSX 83Â kb)
DOI: 10.6084/m9.figshare.c.3632597_d1
title: Additional file 1: of Barriers in the implementation of isoniazid preventive therapy for people living with HIV in Northern Ethiopia: a mixed quantitative and qualitative study

description: Dataset. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3632816_d5
title: Additional file 5: Table S4. of Suboptimal culture conditions induce more deviations in gene expression in male than female bovine blastocysts

description: GO, in terms of the biological process, molecular function, and cellular component, and KEGG pathways of the genes differentially expressed (FDR corrected p-value &lt;0.05, â  FCâ   â Ľ2) in all the comparisons performed. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3632801_d10
title: Additional file 2: Table S1. of Germ cell and tumor associated piRNAs in the medaka and Xiphophorus melanoma models

description: Sample sequence distribution. The percentage of clean reads, as supplied by BGI, was between 98.73 and 99.67Â % of total read number. On average 89.25Â % of all clean reads were mapped to the genome. The number of sequences with a length between 25 and 32 bases was on average 3x higher in ovary and testis than in somatic tissues. In contrast to this, the proportion of sequences mapping to known miRNAs from mirBase or non-coding RNA annotated as miRNA from the ncrna dataset from Ensembl for Xiphophorus (Xiphophorus_maculatus.Xipmac4.4.2.ncrna.fa) was significantly higher in somatic cells than in germline cells. In oxidized samples a clear reduction of RNAs other than piRNAs could be observed. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3632828_d2
title: Additional file 2: of Nutritional quality and marketing strategies of fast food childrenâ  s combo meals in Guatemala

description: Price and nutrition information of child-oriented fast food meals in Guatemala. Data on price and nutrition information of child-oriented fast food meals in Guatemala. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.c.3632801_d11
title: Additional file 6: Table S3. of Germ cell and tumor associated piRNAs in the medaka and Xiphophorus melanoma models

description: Target genes of four selected piRNAs as predicted by RNAhybrid. Thresholds for target selection were minimum free energy
DOI: 10.6084/m9.figshare.c.3632816_d7
title: Additional file 15: Table S6. of Suboptimal culture conditions induce more deviations in gene expression in male than female bovine blastocysts

description: TMM normalized counts of all the genes per embryo and condition. (XLSX 5357 kb)
DOI: 10.6084/m9.figshare.c.3632837_d2
title: Additional file 6: Table S6. of Gene and miRNA expression signature of Lewis lung carcinoma LLC1 cells in extracellular matrix enriched microenvironment

description: Target analysis of differently expressed miRNAs in LLC1 cells under lr-ECM 3D versus 2D cell culture conditions. (XLS 1257Â kb)
DOI: 10.6084/m9.figshare.c.3632816_d8
title: Additional file 8: Table S5. of Suboptimal culture conditions induce more deviations in gene expression in male than female bovine blastocysts

description: RPKM values of all the genes per embryo and condition. (XLSX 4083 kb)
DOI: 10.6084/m9.figshare.c.3633047_d3
title: Additional file 3: of Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation

description: Original Panther analysis tool data tables showing values and p -values for overrepresentation data sets. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3633047_d4
title: Additional file 2: of Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation

description: DESeq2 results showing a comparison between labeled mRNA and total mRNA from adult brain with padjâ
DOI: 10.6084/m9.figshare.c.3633047_d6
title: Additional file 5: of Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation

description: DESeq2 results showing a comparison between labeled mRNA and total mRNA from embryos with padjâ
DOI: 10.6084/m9.figshare.c.3633074_d1
title: Additional file 2: of Validation of triple pass 24-hour dietary recall in Ugandan children by simultaneous weighed food assessment

description: Dataset for validation of triple pass 24-h dietary recall in Ugandan children by simultaneous weighed food assessment; Associated dataset in Excel format to enable validation of results and statistical interpretation. Gender has been removed to limit indirect identifiable information, but can be made available on request. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3633080_d3
title: Additional file 3: Table S1. of Tartaric acid pathways in Vitis vinifera L. (cv. Ugni blanc): a comparative study of two vintages with contrasted climatic conditions

description: Primers and thermal cycling conditions for VvGME, VvVTC2, VvL-GalDH, VvGLDH, VvL-IdnDH, VvEFαI, VvUbiquitine used to Q-PCR study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3633353_d2
title: Additional file 3: of Systematic identification and analysis of frequent gene fusion events in metabolic pathways

description: Is a zip archive containing a tab-delimited table of all 3.8 million predicted fusions. (TXT 494892 kb)
DOI: 10.6084/m9.figshare.c.3633380_d1
title: MOESM2 of Membrane bound modified form of clade B Env, JRCSF is suitable for immunogen design as it is efficiently cleaved and displays all the broadly neutralizing epitopes including V2 and C2 domain-dependent conformational epitopes

description: Additional file 2. Materials and methods.
DOI: 10.6084/m9.figshare.28028231
title: Manuscript Data

description: These data files provide supporting data for the manuscript, which explores the impact of the innovative application of AR technology on consumers' purchase intentions for cultural creative products.
DOI: 10.1594/pangaea.910466
title: High-resolution meteorological observations, Surface Energy Balance components and miscellaneous data from AWS IMAU_aws6
DOI: 10.1594/pangaea.957606
title: Deep-sea pollen record from IODP Site 339-U1385 (SW Iberian margin) during MIS 18

description: Pollen percentages of different ecological groups (Mediterranean forest, Mediterranean taxa/sclerophylls, pioneer trees and shrubs, semi-desert, ubiquists, heathlands) and total pollen concentrations for MIS 18.
DOI: 10.1594/pangaea.957608
title: Alkenone-based SST record from IODP Site 339-U1385 (SW Iberian margin) during MIS 19-17
DOI: 10.1594/pangaea.969081
title: A Global Atlas of Artificial Light At Night Under the Sea V2

description: Coastlines globally are increasingly being illuminated with Artificial Light At Night (ALAN) from various urban infrastructures such as houses, offices, piers, roads, ports and dockyards. Artificial sky glow can now be detected above 22% of the world's coasts nightly and will dramatically increase as coastal human populations more than double by the year 2060. One of the clearest demonstrations that we have entered another epoch, the urbanocene, is the prevalence of ALAN visible from space. Photobiological life history adaptations to the moon and sun are near ubiquitous in the surface ocean (0-200m), such that cycles and gradients of light intensity and spectra are major structuring factors in marine ecosystems. The potential for ALAN to reshape the ecology of coastal habitats by interfering with natural light cycles and the biological processes they inform is increasingly recognized and is an emergent focus for research.This dataset is derived from two primary satellite data sources: an artificial night sky brightness world atlas (Falchi et al., 2016) and an in-water Inherent Optical Property (Lee et al., 2002) dataset derived from ESA's Ocean Colour Climate Change Initiative (OC-CCI https://www.oceancolour.org/).These primary datasets are both used in conjunction with in-situ derived measurements and radiative transfer modelling in order to quantify the critical depth (Zc) to which biologically relevant ALAN penetrates throughout the global ocean's estuarine, coastal and near shore regions, in particular the area defined by an individual country's Exclusive Economic Zone.The critical depth is defined as the depth at which the modelled light level in the water column, illuminated by ALAN, drops below 0.102 µWm-2, the minimum irradiance of white light that elicits diel vertical migration in adult female Calanus copepods (Batnes et al., 2015). This is function of incident ALAN irradiance at the surface as well as the in-water transparency (governed by in-water optically active constituents).This dataset is an updated version of https://doi.pangaea.de/10.1594/PANGAEA.929749 and has improved geolocation, land masking, spectral thresholding and spatial coverage.
description: Filenaming conventions:(1) In-water_clear-sky_ALAN_Zc_Month-MM_aaS_bbN_ccW_ddE_AAA.ncwhere MM is month of the year (01 - January)aa, bb, cc, dd define the regional box of interest where:aa is the minimum latitudebb is the maximum latitudecc is the minimum longitudedd is the maximum longitudeAAA is a free-form descriptor of the geographical region of interest(2)Derived dataset from the primary data by Lee et al., 2002 publication algorithm using the primary dataset of Sathyendranath et al., 2019 (the CCI dataset):ESACCI-OC-MAPPED-CLIMATOLOGY-1M_MONTHLY_4km_GEO_PML_OCx_QAA-Kd-mm-fv4.0.ncwhere mm is the month of the year (01 - January).They contain the diffuse attenuation coefficient Kd at three broadband wavelengths, global, at 4 km resolution in geometric projection.
DOI: 10.6084/m9.figshare.c.3633572_d1
title: Additional file 1: of Does standing or sitting position of the anesthesiologist in the operating theatre influence sevoflurane exposure during craniotomies?

description: Values of each measurements. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3633563_d3
title: Additional file 5: of Coagulative safety of epidural catheters after major upper gastrointestinal surgery: advanced and routine coagulation analysis in 38 patients

description: Raw data with explanation of field codes in first lines. (TXT 18 kb)
DOI: 10.6084/m9.figshare.c.3633584_d1
title: Additional file 2: Table S1. of Detection of a novel astrovirus from a black-naped monarch (Hypothymis azurea) in Cambodia

description: List of sequences used for phylogenetic tree. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3633584_d2
title: Additional file 3: Table S2. of Detection of a novel astrovirus from a black-naped monarch (Hypothymis azurea) in Cambodia

description: Pairwise distance between avastrovirus groups. (XLSX 8 kb)
DOI: 10.1594/pangaea.960686
title: Mid-Pliocene bottom water carbonate clumped isotope temperatures from Equatorial East Pacific ODP Site 138-849

description: This dataset contains temperatures calculated from carbonate clumped isotope measurements performed on mid-Pliocene benthic foraminifera from Ocean Discovery Program (ODP) Site 849 in the Equatorial East Pacific (0°11'N, 110°31'W).
DOI: 10.1594/pangaea.957609
title: Deep-sea pollen record from IODP Site 339-U1385 (SW Iberian margin) during MIS 19-17
DOI: 10.1594/pangaea.960685
title: Mid-Pliocene bottom water carbonate clumped isotope temperatures from North Atlantic IODP Site 303-U1308

description: This dataset contains temperatures calculated from carbonate clumped isotope measurements performed on mid-Pliocene benthic foraminifera from Integrated Ocean Drilling Program (IODP) Site 303-U1308 in the North Atlantic (49°52'N, 24°14'W, water depth: 3871 m).
DOI: 10.1594/pangaea.960687
title: Mid-Pliocene MgCa bottom water temperatures and trace metal data from Equatorial East Pacific ODP Site 138-849

description: This dataset contains the results of trace element analysis (Mg/Ca, Fe/Ca and Mn/Ca ratios in mmol/mol) of the benthic foraminifer Oridorsalis umbonatus from Ocean Discovery Program (ODP) Site 849 in the Equatorial East Pacific (0°11'N, 110°31'W). Trace element ratios were analyzed using a Agilent Inductively Coupled Plasma-Optical Emission Spectrometer (ICP-OES) 720. Mg/Ca data was normalised to the ECRM752-1 standard. Temperatures calculated using the O. umbonatus-specific calibration by Lear et al. (2002). For temperature calculation, raw Mg/Ca ratios were adjusted to account for past variation in seawater Mg/Ca using estimates of seawater Mg/Ca from Evans et al. (2016).
DOI: 10.1594/pangaea.960688
title: Mid-Pliocene MgCa bottom water temperatures, stable isotopes and trace metal data from North Atlantic IODP Site 303-U1308

description: This dataset contains the results of trace element analysis (Mg/Ca, Fe/Ca and Mn/Ca ratios in mmol/mol) of the benthic foraminifer Oridorsalis umbonatus from Integrated Ocean Drilling Program (IODP) Site U1308 in the North Atlantic (49°52'N, 24°14'W, water depth: 3871m).Trace element ratios were analyzed using a Agilent Inductively Coupled Plasma-Optical Emission Spectrometer (ICP-OES) 720. Mg/Ca data was normalised to the ECRM752-1 standard. The dataset also contains stable isotope measurements (δ18O and δ13C) from the benthic foraminifers Cibicidoides mundulus and Cibicidoides wuellerstorfi. Stable isotope measurements were performed using a Finnigan MAT 253 mass spectrometer coupled to a Kiel IV carbonate device. Values are reported in (‰ PDB). Temperatures calculated using the O. umbonatus-specific calibration by Lear et al. (2002). For temperature calculation, raw Mg/Ca ratios were adjusted to account for past variation in seawater Mg/Ca using estimates of seawater Mg/Ca from Evans et al. (2016).
DOI: 10.6084/m9.figshare.c.3634505_d1
title: Additional file 3: Table S1. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration

description: Disease groups in detail. ICD codes are shown as ordered by a RR-based hierarchical clustering; the tables includes the information of co-occurrence between COPD and the ICD9 codes selected in ICD9selected. The columns of the table denote: ICD9: the ICD9 code. GROUP: the DG the ICD9 code pertains to. NAME: the name of the ICD9 3-digit group. prevalence ICD: prevalence of ICD9 code in Medicare. common_diagnoses: prevalence of ICD9 code and COPD simultaneously. RR: COPD-ICD9 code relative risk. Φ: COPD-ICD9 code Φ. (XLSX 46 kb)
DOI: 10.1594/pangaea.973212
title: Processed MPS-mounted CTD data from Maria S. Merian cruise MSM111 BAFFDEEP

description: Research expedition MSM111 took place from September 9th, 2022 (Reykjavik, Iceland) to October 10th, 2022 (St. John's, Canada). CTD data for 8 stations with a total of 15 individual casts were recorded using a Sea & Sun Technology CTD90M (SN 979) down to depths of 700m. The CTD was mounted on a Hydro-BIOS MPS midi and equipped with the following sensors: Temperature sensor Pt100 model 1509 (Thermal Developments International), Conductivity sensor 7-pole platinum coated electrode cell in quartz glass (Sea & Sun Technology), Seapoint Chlorophyll Fluorometer (Seapoint) and dissolved oxygen sensor (DO522M18, Clark type, OxyGuard). The data files contain the data for temperature, salinity, density, chlorophyll a concentration and photosynthetically active radiation; as raw data and processed and flagged according to the recommendations for real-time data processing of EuroGOOS and GTSPP, as well as the outlier detection method CoTeDe (https://github.com/castelao/CoTeDe). TEOS-10 unit conversions have been performed with the GSW Oceanographic Toolbox (McDougall and Barker, 2011).
DOI: 10.6084/m9.figshare.c.3634505_d4
title: Additional file 14: Table S3. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration

description: Pathway co-morbidity biomarkers for DG_8. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3634505_d5
title: Additional file 4: Table S2. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration

description: COPD and Disease Groups by gender. For each DGs the co-occurrence of a DG and COPD is studied by gender and also the differences between genders are computed. For each gender the following columns show: prevalence ICD: prevalence of ICD9 code in Medicare. common_diagnoses: prevalence of ICD9 code and COPD simultaneously. RR: COPD-ICD9 code relative risk. Φ: COPD-ICD9 code Φ. %: the proportion of COPD individuals that also are diagnosed with DGs. Additionally differences between Male and Female are computed for RR, Φ and %. And the ratio of the differences and the Male Values. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3634505_d9
title: Additional file 1: Table S8. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration

description: Association between genes not-associated with age, smoking or life-style and disease groups. In each cell, a 2 (1) denotes that association between gene and disease cluster was identified using mapping1_DG and mapping2_DG (only when mapping2_DG). (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3634505_d11
title: Additional file 16: Table S7. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration

description: Data-sets selected to investigate genes in the context of aging, smoking and life-style. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3634505_d12
title: Additional file 15: Tables S4, S5 and S6. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration

description: Text-mining analysis by PolySearch. set1 = (“aging”, “age”), set2 = (“smoking”,”smoke”), set3 = (“training”,”train”,”healthy life style”); the results of the queries are shown in Additional file 14: Tables S4, S5 and S6 respectively. (ZIP 97 kb)
DOI: 10.15468/dl.xkaq2r
title: Occurrence Download

description: A dataset containing 47379 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-180 65,180 65,180 90,-180 90,-180 65))",
 "TaxonKey is Salvelinus alpinus (Linnaeus, 1758)"
 ]
}

 The dataset includes 47379 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034127-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z3ax4d
title: Occurrence Download

description: A dataset containing 2661 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Colombia, Venezuela (Bolivarian Republic of))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vaccinium meridionale Sw."
 ]
}

 The dataset includes 2661 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034128-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3634991_d1
title: Additional file 1: of Comparison versus reminding

description: Raw data from Experiments 1-3. (XLSX 2704 kb)
DOI: 10.6084/m9.figshare.c.3635180_d8
title: Additional file 1: Table S2. of The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource

description: Original Collection metadata and laboratory determination of plasmid content and species. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.c.3635201_d1
title: Additional file 1: Table S1. of Differential expression of Spiroplasma citri surface protein genes in the plant and insect hosts

description: Relative lipoprotein genes expression levels (-ΔΔCT) in graft-inoculated plants (GIP), in leafhopper-infected plants (LIP) and in insects. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3635213_d8
title: Additional file 6: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues

description: Log 2 ratios and RPKM values of differentially expressed genes. Table of genes shown to be differential regulated (according to chosen criteria, see Material and Methods) in leaves expressing WRI1 from Arabidopsis embryo (AtWRI1), potato embryo (StWRI1em), oat endosperm (AsWRI1es), poplar stem (PtWRI1cm), and nutsedge tuber parenchyma (Ce) in pairwise comparisons to transformed control. Genes are grouped into functional categories (CAR; carbohydrates, CYT; cytochromes, DEF; defence, FAS; fatty acid synthesis, GLY; glycolysis, LIP; lipids, MRE; mitochondrial respiration, OTH; other genes, PHO; photosynthesis, PPP; pentose phosphate pathway, STA; starch, STR; stress, TRA; transport, TRF; transcription factors, UNK; unknown. At numbers represent closest Arabidopsis gene homologs of N. benthamiana transcripts from the TAIR database. (XLSX 329Â kb)