cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3625787_d1.v1
title: Additional file 4: of Venom-gland transcriptome and venom proteome of the Malaysian king cobra (Ophiophagus hannah)

description: Sequence comparision of Malaysian Ophiophagus hannah (MOh; current study) with Balinese species (BOh; Vonk et al. [ 20 ]) and other reported O. hannah toxins deposited in public database. First column indicates the sources of the sequence used in the comparison. Second column indicates the protein family and ID of the current study and NCBI deposited public database (Abbrev.: 3FTx, three-finger toxin; SVMP, snake venom metalloproteinase; PLA2, phospholipase A2; CRISP, cysteine-rich secretory protein; KUN, Kunitz-type proteinase inhibitor; LAAO, L-amino acid oxidase; CVF, Cobra venom factor; IGF, insulin-like growth factor; NP, natriuretic peptide; SVSP, snake venom serine protease; PDE, phosphodiesterase; NGF, nerve growth factor; AChE, acetylcholinesterase; PLB, phospholipase-B; DPP IV, dipeptidylpeptidase IV; CTL, C-type lectin; VEGF, vascular endothelial growth factor). Third column shows the accession number of NCBI and SwissProt database on the first row and (where present) the number of the line in which the peptide match is found in the protein in the subsequent rows. Forth column shows the comparison of MOh with BOh (Vonk et al. [20]) and other reported O. hannah toxins using the sequences retrieved from MOh transcriptome (current study) and NCBI database. Fifth column shows the coverage of the MOh sequences as compared to the aligned sequences. Underline indicates signal peptide sequences; green indicates peptide matches; red indicates the amino acids diverse from the aligned sequences; purple indicated sequences neither matched to O. hannah species nor BOh toxins. *Sequence comparision were based on the annotated protein ID in Addtional file 2; two filters were made for the selections: 1) every protein ID annotated to O. hannah species; 2) proteins of other snake species which are also reported in Vonk et al. [20], i.e., neurotoxin-like protein 1, belonged to [Causus rhombeatus] species but reported in BOh species. (XLSX 31 kb)
DOI: 10.57754/fdat.4qh9h-7ta98
title: Gedichtkorpus Shakespeare / Donne / Dickinson II

description: The corpus consisting of the poems "Batter my heart",  "Some glory in their birth", `You said that I "was great"´, "This was a no pencil", "My life has stood a loaded gun", and "who never wanted - maddest joy" is used for an investigation to show that literary texts are suitable material for linguistic investigations.
description: Research carried out in work package A02 of the SFB 833.
DOI: 10.6084/m9.figshare.c.3625802_d1.v1
title: MOESM5 of Profiling and bioinformatics analyses reveal differential circular RNA expression in radioresistant esophageal cancer cells

description: Additional file 5: Table S5. circRNA_miRNA.target gene.GO.
DOI: 10.6084/m9.figshare.c.3625787_d2.v1
title: Additional file 1: of Venom-gland transcriptome and venom proteome of the Malaysian king cobra (Ophiophagus hannah)

description: Malaysian Ophiophagus hannah venom-gland transcriptome (Transcript FPKM &gt;1). (XLSX 13641 kb)
DOI: 10.6084/m9.figshare.c.3627827_d14.v1
title: MOESM7 of Maintenance-energy requirements and robustness of Saccharomyces cerevisiae at aerobic near-zero specific growth rates

description: Additional file 7. See Additional file 5 caption.
DOI: 10.6084/m9.figshare.c.3627881_d4.v1
title: Additional file 2: Table S1. of A mutation in the low voltage-gated calcium channel CACNA1G alters the physiological properties of the channel, causing spinocerebellar ataxia

description: Summary of exome sequencing. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.c.3627905_d1.v1
title: Additional file 1: of Discrepancies between qualitative and quantitative evaluation of randomised controlled trial results: achieving clarity through mixed methods triangulation

description: Convergence coding matrix. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3627881_d5.v1
title: Additional file 3: Table S2. of A mutation in the low voltage-gated calcium channel CACNA1G alters the physiological properties of the channel, causing spinocerebellar ataxia

description: Candidate variants. (XLSX 35Â kb)
DOI: 10.5258/soton/d3293
title: Dataset in support of the journal article 'The impact of reintroduced Eurasian beaver (Castor fiber) dams on the upstream movement of brown trout (Salmo trutta) in upland areas of Great Britain'

description: This dataset contains all data used for generating Fig 2-10 
Fig 2. Coarse resolution rainfall and discharge data from a nearby river. 
Fig 3. Environmental data for the Monitoring periods in 2015 and 2016. 
Fig 4. Movements of an individual PIT tagged trout. 
Fig 5. Movement patterns of six individual brown trout. Movement patterns of six individual brown trout 
Fig 6. Kaplan Meier plots for all four beaver dams
Fig 7. Covariate parameter estimates
Fig 8. Passage prediction plots
Fig 9. Mean swimming speed (m min -1) between beaver dams
Fig 10. Mean fork length of trout for each movement category

Article to be published in PLoS One
DOI: 10.6084/m9.figshare.c.3629918_d3.v1
title: Additional file 9: of Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes

description: Folder containing homology models of LuxS proteins of Borrelia burgdorferi (Cluster-1), Amphibacillus jilinensis (Cluster-2), Lactobacillus plantarum (Cluster-3), Truepera radiovictrix (Cluster-4) and Vibrio harveyi (Cluster-5); Multiple structural alignment of homology models; Sieved structure of LuxS protein of B. subtilis against 0.8Ă threshold from the multiple structural alignment. (ZIP 677 kb)
DOI: 10.6084/m9.figshare.c.3629951_d1.v1
title: MOESM1 of Malaria prevalence in Bata district, Equatorial Guinea: a cross-sectional study

description: Additional file1: Table 1. Prevalence of Plasmodium infection by age group and setting, Bata district, Equatorial Guinea, June – August 2013.
DOI: 10.6084/m9.figshare.c.3629954_d1.v1
title: Additional file 2: Table S8. of Genome-wide DNA methylation analysis of transient neonatal diabetes type 1 patients with mutations in ZFP57

description: Hypo- and hypermethylated regions detected in at least 2 patients. Additionally, the following characteristics of the regions are included in the table: known imprinting status, CpG island, ZFP57 motifs, microarray probes, bisulphite-sequencing results, allele-specific methylation, intermediate methylation and H3K4me2/me3.
DOI: 10.6084/m9.figshare.c.3629954_d2.v1
title: Additional file 1: Tables S1-7. of Genome-wide DNA methylation analysis of transient neonatal diabetes type 1 patients with mutations in ZFP57

description: Hypo- and hypermethylated regions detected in patients and heterozygotes.
DOI: 10.15468/dl.85s947
title: Occurrence Download

description: A dataset containing 31736 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyphantria cunea (Drury, 1773)"
 ]
}

 The dataset includes 31736 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038777-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3631823_d18.v1
title: Additional file 6: of Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize

description: LincRNAs predicted as miRNA decoys. (XLS 71Â kb)
DOI: 10.6084/m9.figshare.c.3631823_d19.v1
title: Additional file 5: of Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize

description: The sequence logos of the 12 conserved lincRNAs as miRNA targets. (ZIP 3605Â kb)
DOI: 10.6084/m9.figshare.c.3631847_d12.v1
title: Additional file 2: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions

description: The transcripts classified into different clusters based on their expression patterns using K-means clustering analysis of transcripts differentially expressed in ‘Veyo’ during cold acclimation. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3631925_d1.v1
title: Additional file 1: of The influence of calcitonin gene-related peptide on markers of bone metabolism in MG-63 osteoblast-like cells co-cultured with THP-1 macrophage-like cells under virtually osteolytic conditions

description: Data and statistical analysis of particle- or LPS-activated THP-1/MG-63 co-cultures. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3631847_d14.v1
title: Additional file 9: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions

description: Major molecular functions of differentially expressed transcripts in ‘Veyo’ genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation identified by the DAVID tool. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3631925_d2.v1
title: Additional file 3: of The influence of calcitonin gene-related peptide on markers of bone metabolism in MG-63 osteoblast-like cells co-cultured with THP-1 macrophage-like cells under virtually osteolytic conditions

description: Data and statistical analysis of various particle- or LPS-activated cell cultures. (XLSX 16 kb)
DOI: 10.15468/dl.xxevjj
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anisarchus medius (Reinhardt, 1837)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 131 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038780-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3631925_d3.v1
title: Additional file 2: of The influence of calcitonin gene-related peptide on markers of bone metabolism in MG-63 osteoblast-like cells co-cultured with THP-1 macrophage-like cells under virtually osteolytic conditions

description: Data and statistical analysis of particle- or LPS-activated THP-1/MG-63 co-cultures treated with the neuropeptide CGRP. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3631847_d16.v1
title: Additional file 3: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions

description: The transcripts classified into different clusters based on their expression patterns using K-means clustering analysis of transcripts differentially expressed in ‘Falster’ during cold acclimation. (XLSX 31 kb)
DOI: 10.15468/dl.qtmby6
title: Occurrence Download

description: A dataset containing 59757 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((14.12534 35.78082,14.66881 35.78082,14.66881 36.10342,14.12534 36.10342,14.12534 35.78082))"
 ]
}

 The dataset includes 59757 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038778-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3634541_d1.v1
title: Additional file 1: Table S1. of Expression of chicken interleukin-2 by a highly virulent strain of Newcastle disease virus leads to decreased systemic viral load but does not significantly affect mortality in chickens

description: Summary of clinical signs and mortality in 4-week-old chickens infected with rZJ1-GFP, rZJ1-IL2, and BHI. Numbers in the cells represent the percentages of birds presenting the clinical sign over the total birds present in the group at the time. Highlighted cells represent groups where all the animals are dead. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3636554_d1.v1
title: Additional file 2: Table S1. of Symbiosis dependent accumulation of primary metabolites in arbuscule-containing cells

description: Summary of polar primary metabolites identified in root cortical cells of mycorrhizal and non-mycorrhizal roots of M. truncatula. Polar metabolites were analysed by GC-EI/TOF-MS based on metabolic profiling of methoxyaminated and trimethylsilylated metabolites. Data are expressed as means of two technical replicates. (XLS 57Â kb)
DOI: 10.6084/m9.figshare.c.3636557_d1.v1
title: Additional file 1: of Evaluation in alcohol use disorders â   insights from the nalmefene experience

description: References. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3638990_d1.v1
title: Additional file 2: of Molecular features of biguanides required for targeting of mitochondrial respiratory complex I and activation of AMP-kinase

description: Individual data points for mouse heart mitochondria simultaneously uncoupled with ADP and inhibited with phenformin. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3638990_d2.v1
title: Additional file 3: of Molecular features of biguanides required for targeting of mitochondrial respiratory complex I and activation of AMP-kinase

description: Data for TMRM measurements on 143B cells. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3638990_d3.v1
title: Additional file 1: of Molecular features of biguanides required for targeting of mitochondrial respiratory complex I and activation of AMP-kinase

description: Supporting information and individual data points for figures 1b, 1c, 1d, 2d, 3b, 3d, 4c, and 5b. (XLSX 152 kb)
DOI: 10.6084/m9.figshare.c.3639008_d1.v1
title: Additional file 2: Table S2. of Large-scale gene co-expression network as a source of functional annotation for cattle genes

description: Module membership and connectivity of 16,608 probe sets used in this study. (XLSX 980Â kb)
DOI: 10.6084/m9.figshare.c.3639008_d3.v1
title: Additional file 4: Table S4. of Large-scale gene co-expression network as a source of functional annotation for cattle genes

description: String [21] protein interaction information of four selected modules in CGCN. (XLSX 1177Â kb)
DOI: 10.6084/m9.figshare.c.3639008_d7.v1
title: Additional file 3: Table S3. of Large-scale gene co-expression network as a source of functional annotation for cattle genes

description: Over-represented GO/Pathway terms in the co-expressed modules. (XLSX 287Â kb)
DOI: 10.6084/m9.figshare.c.3639008_d6.v1
title: Additional file 8: Table S5. of Large-scale gene co-expression network as a source of functional annotation for cattle genes

description: Functional enrichment analysis of close neighbors (TOMâ  &gt;â  0.01) of 133 un-annotated genes in CGCN. (XLSX 479Â kb)
DOI: 10.6084/m9.figshare.c.3639008_d9.v1
title: Additional file 1: Table S1. of Large-scale gene co-expression network as a source of functional annotation for cattle genes

description: Microarray datasets used in this study. (XLSX 152Â kb)
DOI: 10.6084/m9.figshare.c.3639011_d1.v1
title: MOESM2 of Recurrent mild cerebral ischemia: enhanced brain injury following acute compared to subacute recurrence in the rat

description: Additional file 2. Physiological measures for each animal in the 1d and 3d recurrent mild ischemic insult groups. Shown are the doppler flow measures (% baseline), rectal temperature, mean arterial blood pressure (MABP) and blood gas values.
DOI: 10.17863/cam.101688
title: Research data supporting "An Experimental Investigation into the Dimensional Quality of the Material Extrusion Additive Manufacturing Process" (B.3)

description: High speed camera video recording (.mp4 file) showing filament behaviour during extrusion without external fan. The video was filmed with a Chronos 1.4 high-speed camera from Kron Technologies which was positioned at a 30 mm focal distance from the subject. The optical axis was carefully positioned parallel to the nozzle. An aspect ratio of 1280 x 1024, frame rate of 1069 FPS, with an exposure time of 545 μs were used. The video recording shows how the filament behaves as it is extruded without the Creality machine's external fan. Recording was in the X plane with a static nozzle. The extrusion parameters are shown below. PLA material, extrusion rate 5 mm/s, and extruder temperature 200 deg.
DOI: 10.15468/dl.hq9vq8
title: Occurrence Download

description: A dataset containing 1327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anisotremus virginicus (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1327 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038782-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640169_d2.v1
title: Additional file 6: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S6: FoHelis with multiple 5' termini. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.c.3640169_d4.v1
title: Additional file 7: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S7: Putative gene capture events. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.c.3640169_d3.v1
title: Additional file 8: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S8: Number of protiens with a Rep and/or Hel domain found in queried species. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3640169_d5.v1
title: Additional file 2: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S1: FoHelis found in this study: position on the genome, start and end sequences, position of the predicted ORFs. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3640169_d7.v1
title: Additional file 5: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S5: Copynumber estimate based on partial hits. (XLSX 272 kb)
DOI: 10.6084/m9.figshare.c.3640169_d6.v1
title: Additional file 9: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S9: FoHeli-like sequences found in other species. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3640169_d8.v1
title: Additional file 3: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S2, additional ORFs predicted within FoHeli termini. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3640169_d9.v1
title: Additional file 4: of Non-canonical Helitrons in Fusarium oxysporum

description: Table S3: non-autonomous FoHelis. (XLSX 47 kb)
DOI: 10.15468/dl.ekgv3b
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Salix amplexicaulis Bory, Salix purpurea var. amplexicaulis (Bory & Chaub.) Boiss., Salix purpurea subsp. amplexicaulis (Bory & Chaub.) C.K.Schneid.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 67 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038783-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28052774
title: Mutation Data

description: In our study of SARS-CoV-2 genomic mutation analysis we investigated on the variants and different types of mutations in the viral genome and compared them with the variants from the other regions of the world.
DOI: 10.6084/m9.figshare.28052774.v1
title: Mutation Data

description: In our study of SARS-CoV-2 genomic mutation analysis we investigated on the variants and different types of mutations in the viral genome and compared them with the variants from the other regions of the world.
DOI: 10.6084/m9.figshare.c.3641042_d2.v1
title: Additional file 6: Table S4. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of all genes and expression profiles for each stage. A gene is considered expressed if the FPKM is larger than 1. All expressed genes for each stage and their annotation information based on the BLAST results against the Swiss-Prot database are included here. (XLSX 8428Â kb)
DOI: 10.6084/m9.figshare.c.3641042_d3.v1
title: Additional file 4: Table S2. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of all genes and expression profiles for each of the 20 classes in the Gene Ontology category ‘Cellular Component’ (related to Fig. 5). For the top 20 enriched GO terms in the cellular component namespace, we list all genes associated with these GO terms (one GO term per sheet). The expression profiles and the annotation information based on the BLAST results against the Swiss-Prot database are also included. (XLSX 2059 kb)
DOI: 10.6084/m9.figshare.c.3641042_d6.v1
title: Additional file 7: Table S5. of A transcriptional blueprint for a spiral-cleaving embryo

description: Highest exclusively expressed genes at each stage. The 30 highest exclusively expressed genes at 2, 4, 6, 8, 10, 12, and 14 hpf are shown including their calculated FPKM (see results for more details). (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3641042_d4.v1
title: Additional file 12: Table S8. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of genes in each cluster (related to Fig.Â 8). We classified all expressed genes into 15 clusters and all genes within the clusters are listed here. The expression profile and the annotation information are also included. (XLSX 1448Â kb)
DOI: 10.6084/m9.figshare.c.3641042_d8.v1
title: Additional file 10: Table S6. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of down-regulated genes between adjacent stages. Only genes that exhibit an FPKM of 10 or higher in the earlier stage are shown. The list is ordered by FDR (cutoff is 0.001) and includes the expression values and the annotated protein name. (XLSX 143Â kb)
DOI: 10.6084/m9.figshare.c.3641042_d7.v1
title: Additional file 3: Table S1. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of all genes and expression profiles for each of the 20 classes in the Gene Ontology category ‘Biological Process’ (related to Fig. 5). For the top 20 enriched GO terms in the biological process namespace, we list all genes associated with these GO terms (one GO term per sheet). The expression profiles and the annotation information based on the BLAST results against the Swiss-Prot database are also included. (XLSX 999 kb)
DOI: 10.6084/m9.figshare.c.3641042_d11.v1
title: Additional file 14: Table S10. of A transcriptional blueprint for a spiral-cleaving embryo

description: Gene Ontology term enrichment in each cluster (related to Fig.Â 8 and Additional file 12: Table S8). For each cluster, we list the top 30 enriched GO terms. These GO terms are ordered by the number of GO terms associated with the genes in the clusters. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3641042_d12.v1
title: Additional file 5: Table S3. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of all genes and expression profiles for each of the 20 classes in the Gene Ontology category ‘Molecular Function’ (related to Fig. 5). For the top 20 enriched GO terms in the molecular function namespace, we list all genes associated with these GO terms (one GO term per sheet). The expression profiles and the annotation information based on the BLAST results against the Swiss-Prot database are also included. (XLSX 1675 kb)
DOI: 10.6084/m9.figshare.c.3641042_d13.v1
title: Additional file 13: Table S9. of A transcriptional blueprint for a spiral-cleaving embryo

description: KEGG enrichment in each cluster (related to Fig.Â 8 and Additional file 12: Table S8). For each cluster, we list the top 30 enriched KEGG pathways. These KEGG pathways are ordered by the number of pathways associated with the genes in the clusters. (XLSX 17Â kb)