cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19401857.v1
title: Additional file 1 of Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding

description: Additional file 1.
DOI: 10.6084/m9.figshare.19401860
title: Additional file 2 of Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding

description: Additional file 2.
DOI: 10.6084/m9.figshare.19401860.v1
title: Additional file 2 of Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding

description: Additional file 2.
DOI: 10.6084/m9.figshare.19401863.v1
title: Additional file 3 of Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding

description: Additional file 3.
DOI: 10.6084/m9.figshare.19401869
title: Additional file 4 of Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding

description: Additional file 4.
DOI: 10.6084/m9.figshare.19401869.v1
title: Additional file 4 of Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding

description: Additional file 4.
DOI: 10.6084/m9.figshare.19401863
title: Additional file 3 of Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding

description: Additional file 3.
DOI: 10.6084/m9.figshare.19401881
title: Additional file 2 of Germline variants in genes of the subcortical maternal complex and Multilocus Imprinting Disturbance are associated with miscarriage/infertility or Beckwith–Wiedemann progeny

description: Additional file 2. Table S2. List of prioritized genes in WES analysis.
DOI: 10.6084/m9.figshare.19401881.v1
title: Additional file 2 of Germline variants in genes of the subcortical maternal complex and Multilocus Imprinting Disturbance are associated with miscarriage/infertility or Beckwith–Wiedemann progeny

description: Additional file 2. Table S2. List of prioritized genes in WES analysis.
DOI: 10.6084/m9.figshare.19136033
title: Additional file 1 of Satellitome comparison of two oedipodine grasshoppers highlights the contingent nature of satellite DNA evolution

description: Additional file 1: Tables S1-S4. Table S1. Molecular and cytological properties of the satellitomes in Oedaleus decorus (Ode) and Locusta migratoria (Lmig). Note that telomeric DNA was also numbered in both species (no. 13 and 7, respectively) but are omited here because they were not considered for this paper analyses. RUL = Repeat unit length. TSI = Tandem structure index. SF = Superfamily. RPS = Relative peak size. DIVPEAK = Divergence peak. MAL = Maximum array length observed in MinIon reads of L. migratoria. FISH = FISH pattern (B = banded, NS = No signal). Local = Localization (p = proximal, i = interstitial, d = distal). Motifs = Conserved motifs in the DNA sequence (0 = Yes, 1 = No). Curvature = Propensity to adquire stable structures (0 = Yes, 1 = No). dG = Gibbs gree energy of the predicted secondary structure. Table S2. Homology between satDNA families found in O. decorus and L. migratoria. OSF = Orthologous superfamily. Those families chosen for comparisons between orthologous pairs are noted in bold-type letter. Table S3. Total number of external reads for each satellite family in O. decorus (Ode) and L. migratoria (Lmig) and its annotation. TSI = Tandem Structure Index. Table S4. Characteristics of the orthologous satDNA families analyzed in O. decorus (14) and L. migratoria (20). Each row includes one Ode and one Lmi satDNA families showing homology. Note that some Ode families showed homology with two or three Lmi ones. OSF = Orthologous superfamily, sf = number of subfamilies, SF = superfamily name, FISH = FISH pattern (B = banded, NS = no signal), RUL = Repeat unit length (bp), A + T = % A + T content, abun = abundance (% of the genome), div = divergence (%), peak_size = abundance of the 5% divergence classes around DIVPEAK, RPS = Relative peak size, DP = DIVPEAK, kur = kurtosis of repeat landscape distribution, TSI = Tandem structure index, dG = Free energy of repeat unit sequence, MAL = Maximum array length observed in MinIon reads of L. migratoria, CEI = Concerted evolution index (L = L. migratoria, O = O. decorus), Intid = Interspecific sequence identity (%), Intdiv = Interspecific divergence, CTR = Consensus turnover rate, ILibS = Incomplete library sorting. Negative CEI values and Int_id&gt; 95% are remarked in bold type letter.
DOI: 10.6084/m9.figshare.19136033.v1
title: Additional file 1 of Satellitome comparison of two oedipodine grasshoppers highlights the contingent nature of satellite DNA evolution

description: Additional file 1: Tables S1-S4. Table S1. Molecular and cytological properties of the satellitomes in Oedaleus decorus (Ode) and Locusta migratoria (Lmig). Note that telomeric DNA was also numbered in both species (no. 13 and 7, respectively) but are omited here because they were not considered for this paper analyses. RUL = Repeat unit length. TSI = Tandem structure index. SF = Superfamily. RPS = Relative peak size. DIVPEAK = Divergence peak. MAL = Maximum array length observed in MinIon reads of L. migratoria. FISH = FISH pattern (B = banded, NS = No signal). Local = Localization (p = proximal, i = interstitial, d = distal). Motifs = Conserved motifs in the DNA sequence (0 = Yes, 1 = No). Curvature = Propensity to adquire stable structures (0 = Yes, 1 = No). dG = Gibbs gree energy of the predicted secondary structure. Table S2. Homology between satDNA families found in O. decorus and L. migratoria. OSF = Orthologous superfamily. Those families chosen for comparisons between orthologous pairs are noted in bold-type letter. Table S3. Total number of external reads for each satellite family in O. decorus (Ode) and L. migratoria (Lmig) and its annotation. TSI = Tandem Structure Index. Table S4. Characteristics of the orthologous satDNA families analyzed in O. decorus (14) and L. migratoria (20). Each row includes one Ode and one Lmi satDNA families showing homology. Note that some Ode families showed homology with two or three Lmi ones. OSF = Orthologous superfamily, sf = number of subfamilies, SF = superfamily name, FISH = FISH pattern (B = banded, NS = no signal), RUL = Repeat unit length (bp), A + T = % A + T content, abun = abundance (% of the genome), div = divergence (%), peak_size = abundance of the 5% divergence classes around DIVPEAK, RPS = Relative peak size, DP = DIVPEAK, kur = kurtosis of repeat landscape distribution, TSI = Tandem structure index, dG = Free energy of repeat unit sequence, MAL = Maximum array length observed in MinIon reads of L. migratoria, CEI = Concerted evolution index (L = L. migratoria, O = O. decorus), Intid = Interspecific sequence identity (%), Intdiv = Interspecific divergence, CTR = Consensus turnover rate, ILibS = Incomplete library sorting. Negative CEI values and Int_id&gt; 95% are remarked in bold type letter.
DOI: 10.6084/m9.figshare.19136039
title: Additional file 3 of Satellitome comparison of two oedipodine grasshoppers highlights the contingent nature of satellite DNA evolution

description: Additional file 3: Dataset S1. Dataset 1a. Data from the Oedaleus decorus repeat landscape indicating genomic abundance for each satellite DNA family and divergence interval. Dataset 1b. Data from the Locusta migratoria repeat landscape indicating genomic abundance for each satellite DNA family and divergence interval.
DOI: 10.6084/m9.figshare.19136039.v1
title: Additional file 3 of Satellitome comparison of two oedipodine grasshoppers highlights the contingent nature of satellite DNA evolution

description: Additional file 3: Dataset S1. Dataset 1a. Data from the Oedaleus decorus repeat landscape indicating genomic abundance for each satellite DNA family and divergence interval. Dataset 1b. Data from the Locusta migratoria repeat landscape indicating genomic abundance for each satellite DNA family and divergence interval.
DOI: 10.6084/m9.figshare.19401962
title: Additional file 1 of Dopamine D1- and D2-like receptors oppositely regulate lifespan via a dietary restriction mechanism in Caenorhabditis elegans

description: Additional file 1: Table S1. List of C. elegans strains used in this study.
DOI: 10.6084/m9.figshare.19401962.v1
title: Additional file 1 of Dopamine D1- and D2-like receptors oppositely regulate lifespan via a dietary restriction mechanism in Caenorhabditis elegans

description: Additional file 1: Table S1. List of C. elegans strains used in this study.
DOI: 10.6084/m9.figshare.19401965
title: Additional file 2 of Dopamine D1- and D2-like receptors oppositely regulate lifespan via a dietary restriction mechanism in Caenorhabditis elegans

description: Additional file 2: Table S2. Supporting data.
DOI: 10.6084/m9.figshare.19401965.v1
title: Additional file 2 of Dopamine D1- and D2-like receptors oppositely regulate lifespan via a dietary restriction mechanism in Caenorhabditis elegans

description: Additional file 2: Table S2. Supporting data.
DOI: 10.6084/m9.figshare.19401963
title: Additional file 2 of Surfaceome analyses uncover CD98hc as an antibody drug-conjugate target in triple negative breast cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.19401966
title: Additional file 3 of Surfaceome analyses uncover CD98hc as an antibody drug-conjugate target in triple negative breast cancer

description: Additional file 3.
DOI: 10.6084/m9.figshare.19401966.v1
title: Additional file 3 of Surfaceome analyses uncover CD98hc as an antibody drug-conjugate target in triple negative breast cancer

description: Additional file 3.
DOI: 10.6084/m9.figshare.19401963.v1
title: Additional file 2 of Surfaceome analyses uncover CD98hc as an antibody drug-conjugate target in triple negative breast cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.19401977.v1
title: Additional file 2 of Synthesis, crystal structure, Hirshfeld surface investigation and comparative DFT studies of ethyl 2-[2-(2-nitrobenzylidene)hydrazinyl]thiazole-4-carboxylate

description: Additional file 2.
DOI: 10.6084/m9.figshare.19401977
title: Additional file 2 of Synthesis, crystal structure, Hirshfeld surface investigation and comparative DFT studies of ethyl 2-[2-(2-nitrobenzylidene)hydrazinyl]thiazole-4-carboxylate

description: Additional file 2.
DOI: 10.25912/rdf_1646872117507
title: Wzi and Itr gene typing in Acinetobacter baumannii genomes
DOI: 10.6084/m9.figshare.19352474
title: ARRIVE checklist for “In vitro and in vivo study: Ethanolic extract leaves of Azadirachta indica Juss. variant of Indonesia and Philippines suppresses tumor growth of hepatocellular carcinoma by inhibiting STAT3-IL-6 signaling”

description: Dataset of ARRIVE checklist for “<i>In vitro</i> and <i>in vivo</i> study: Ethanolic extract leaves of <i>Azadirachta indica</i> Juss. variant of Indonesia and Philippines suppresses tumor growth of hepatocellular carcinoma by inhibiting STAT3-IL-6 signaling”
DOI: 10.6084/m9.figshare.19352474.v1
title: ARRIVE checklist for “In vitro and in vivo study: Ethanolic extract leaves of Azadirachta indica Juss. variant of Indonesia and Philippines suppresses tumor growth of hepatocellular carcinoma by inhibiting STAT3-IL-6 signaling”

description: Dataset of ARRIVE checklist for “<i>In vitro</i> and <i>in vivo</i> study: Ethanolic extract leaves of <i>Azadirachta indica</i> Juss. variant of Indonesia and Philippines suppresses tumor growth of hepatocellular carcinoma by inhibiting STAT3-IL-6 signaling”
DOI: 10.5281/zenodo.6378127
title: SNP

description: Genetic Variation in the ZNF208 gene at rs8103163 and rs7248488 are associated with Laryngeal cancer in the Northwestern Chinese Han male
DOI: 10.5281/zenodo.6378126
title: SNP

description: Genetic Variation in the ZNF208 gene at rs8103163 and rs7248488 are associated with Laryngeal cancer in the Northwestern Chinese Han male
DOI: 10.5281/zenodo.6378131
title: Low thermal conductivity of hydrous phase D leads to a self-preservation effect within a subducting slab

description: This repository contains experimental data on the thermal conductivity of hydrous phase D mineral at high pressure and temperature. This dataset is presented in a manuscript submitted by Wen-Pin Hsieh, Enrico Marzotto, Takayuki Ishii, Leonid Dubrovinsky, Alena A. Aslandukova, Giacomo Criniti, Yi-Chi Tsao, Chun-Hung Lin, Jun Tsuchiya, and Eiji Ohtani entitled: Low thermal conductivity of hydrous phase D leads to a self-preservation effect within a subducting slab
DOI: 10.5281/zenodo.6378130
title: Low thermal conductivity of hydrous phase D leads to a self-preservation effect within a subducting slab

description: This repository contains experimental data on the thermal conductivity of hydrous phase D mineral at high pressure and temperature. This dataset is presented in a manuscript submitted by Wen-Pin Hsieh, Enrico Marzotto, Takayuki Ishii, Leonid Dubrovinsky, Alena A. Aslandukova, Giacomo Criniti, Yi-Chi Tsao, Chun-Hung Lin, Jun Tsuchiya, and Eiji Ohtani entitled: Low thermal conductivity of hydrous phase D leads to a self-preservation effect within a subducting slab
DOI: 10.5281/zenodo.6378188
title: Delineating the Controlling Factors of Hydraulic Fracturing-Induced Seismicity in the Northern Montney Play, Northeastern British Columbia, Canada, with Machine Learning

description: Earthquake catalog for northern Montney Play from 2014-2021.
DOI: 10.5281/zenodo.6378187
title: Delineating the Controlling Factors of Hydraulic Fracturing-Induced Seismicity in the Northern Montney Play, Northeastern British Columbia, Canada, with Machine Learning

description: Earthquake catalog for northern Montney Play from 2014-2021.
DOI: 10.7910/dvn/yb9mkm
title: Data Extraction Sheet_Male Engagement in Family Planning

description: The data extraction sheet consisted of a breakup of the key areas of enquiry. It consists of domains such as: study settings and demographics, study objectives, data collection and methods, themes around contraception uptake, barriers and motivations of engagement of men, other themes, conclusions.
DOI: 10.5519/qd.3jw21gso
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.34740/kaggle/dsv/3344322
title: NYC PLUTO Lagged Longitudinal Residential Data
DOI: 10.6084/m9.figshare.19401308
title: untitle

description: DATA<br>
DOI: 10.6084/m9.figshare.19401308.v2
title: untitle

description: DATA<br>
DOI: 10.6084/m9.figshare.19401308.v1
title: Ionospheric Scintillation and TEC Data at Sanya, Hinan province, China

description: Mainly contains amplitude and phase scintillation indices and TEC data at Sanya, Hinan province, China.
DOI: 10.6084/m9.figshare.19402565
title: Supplementary Material for: Drug Testing for Chronic Kidney Disease and Diabetes in Animals versus Humans: A Comparative Analysis of Study Designs and Reporting Qualities

description: <b><i>Introduction:</i></b> Diabetes is a highly prevalent accelerator or even cause of chronic kidney disease imposing a large unmet medical need at the global scale. Massive research activities continue to be in search of a cure but the yield of the classical bench-to-bedside research approach has been low. We speculated that a significant mismatch in design and quality of animal and clinical studies in this domain is a hurdle for translation. <b><i>Methods:</i></b> We performed a meta-analysis of matched pairs of animal and human studies that tested the efficacy of distinct drug interventions for diabetic kidney disease (DKD). We reviewed study designs and reporting quality of such studies over the last decade according to the standards listed in the CONSORT and ARRIVE recommendations, respectively. <b><i>Results:</i></b> We noted a wide diversity in the study designs of animal studies in terms of diabetes induction. Major mismatches with the respective human studies referred to age and sex distribution, comorbidities, stage of the kidney disease, and selection of primary endpoints. Usually, treatment was initiated before onset of kidney disease without any standard of care as a background therapy. The reporting quality of animal studies was poor for randomization procedures, blinding, sample size calculation for a prespecified primary endpoint or the safety analysis. Reporting quality of clinical studies had deficits in trial design-, recruitment-, allocation-, and outcome-related aspects. <b><i>Conclusion:</i></b> Bench-to-bedside translation in the domain of DKD suffers from major deficits in the design of experimental studies in view of the projected clinical trials as well as from significant deficits in the reporting quality in preclinical and clinical studies.
DOI: 10.25440/smu.19402547
title: Online supplement to 'A panel clustering approach to analyzing bubble behavior

description: This is the online supplement to the working paper 'A panel clustering approach to analyzing bubble behavior', available at https://ink.library.smu.edu.sg/soe_research/2591/<br>This online supplement has six sections. Section A collects together technical lemmas that are used for membership estimation in the first stage. Section B collects the lemmas needed for post-clustering panel estimation and the bubble detection methods, specifically the post-clustering panel t- and J-tests. Section C collects results and proofs for selecting the number of groups. Section D extends the two-stage algorithm and the corresponding post-clustering statistics to the mixed-root panel autoregressive model with purely stationary, unit, and purely explosive roots. Section E overviews experimental designs and reports simulation findings. Section F contains tables.
DOI: 10.25440/smu.19402547.v1
title: Online supplement to 'A panel clustering approach to analyzing bubble behavior

description: This is the online supplement to the working paper 'A panel clustering approach to analyzing bubble behavior', available at https://ink.library.smu.edu.sg/soe_research/2591/<br>This online supplement has six sections. Section A collects together technical lemmas that are used for membership estimation in the first stage. Section B collects the lemmas needed for post-clustering panel estimation and the bubble detection methods, specifically the post-clustering panel t- and J-tests. Section C collects results and proofs for selecting the number of groups. Section D extends the two-stage algorithm and the corresponding post-clustering statistics to the mixed-root panel autoregressive model with purely stationary, unit, and purely explosive roots. Section E overviews experimental designs and reports simulation findings. Section F contains tables.
DOI: 10.25914/gghk-td61
title: MITgcm: regional simulation of the 2017/18 Tasman Sea marine heatwave v1.0

description: A regional ocean model simulation of the 2017/18 Tasman Sea marine heatwave was conducted with the Massachusetts Institute of Technology general circulation model (MITgcm; Marshall et al., 1997). A single 1/100° resolution simulation was run for the period 1 January 2016 to 30 April 2018 (28 months) for the region. The horizontal resolution of ~1 km is sufficient to resolve the submesoscale field. The vertical grid consisted of 100 layers of varying thickness, with 5 m layers for the top 100 m, and then gradually increasing to 100 m layers beyond 1000 m depth. The maximum depth was 5844 m. The initial state and boundary conditions were from the Copernicus Marine Environment Monitoring Service (CMEMS) Operational Mercator global ocean analysis and forecast system, which is provided at 1/12° resolution (GLOBAL_ANALYSIS_FORECAST_PHY_001_024). Atmospheric conditions throughout the simulation were from the European Centre for Medium-Range Weather Forecasts (ECMWF) atmospheric analysis. Other details of the simulation follow those given by Bachman et al. (2017). The key variables for the analysis (and provided here) are: temperature, salinity, and vertical velocity. Full heat budget terms were computed only for the periods 2016-11-01 to 2017-04-01 and 2017-11-01 to 2018-04-01. References Marshall, J., Adcroft, A., Hill, C., Perelman, L., Heisey, C., 1997. A finite-volume, incompressible Navier Stokes model for studies of the ocean on parallel computers. J. Geophys. Res. Ocean., 102, 5753–5766. doi:10.1029/96JC02775 Bachman, S.D., Taylor, J.R., Adams, K.A., Hosegood, P.J., 2017. Mesoscale and submesoscale effects on mixed layer depth in the Southern Ocean. J. Phys. Oceanogr., 47, 2173–2188. doi:10.1175/JPO-D-17-0034.1 Acknowledgements We thank the Australian Research Council Centre of Excellence for Climate Extremes (CE170100023) for ongoing support. The National Computational Infrastructure, which is supported by the Australian Government, was utilised for processing and analysing the data.
DOI: 10.15151/esrf-es-754518301
title: high resolution cryo-em studies of Photosynthetic complex II

description: This beam time will be used to image PSII complexes from grids who have been already stored in ESRF.
DOI: 10.6084/m9.figshare.19402688
title: Primers used for gaps.xlsx

description: These primers were utilized for the synthesis of gaps.
DOI: 10.6084/m9.figshare.19402688.v1
title: Primers used for gaps.xlsx

description: These primers were utilized for the synthesis of gaps.
DOI: 10.5517/ccdc.csd.cc29kpg1
title: CCDC 2132163: Experimental Crystal Structure Determination

description: Related Article: Alexandra Hildebrand, Peter Lönnecke, Luminita Silaghi-Dumitrescu, Evamarie Hey-Hawkins|2022|Polyhedron|218|115755|doi:10.1016/j.poly.2022.115755
DOI: 10.5281/zenodo.6378149
title: Alexa top 240 sites

description: The Alexa top 240 sites for reproducing results from "FlexHTTP: An Intelligent and Scalable HTTP Version Selection System. EuroMLSys'22"
DOI: 10.5281/zenodo.6378148
title: Alexa top 240 sites

description: The Alexa top 240 sites for reproducing results from "FlexHTTP: An Intelligent and Scalable HTTP Version Selection System. EuroMLSys'22"
DOI: 10.14457/cu.the.2014.1581
title: Creating value-added biodegradable multi-layered films with As-desired functions
DOI: 10.14457/cu.the.2014.1582
title: Development of benzoxazine macrocycles for supramolecules/molecular necklace via click chemistry
DOI: 10.14457/cu.the.2014.1583
title: Utilization of methane: methylation of benzene with methane and gas-to-liquids (GTL) via fischer-tropsch synthesis
DOI: 10.14457/cu.the.2014.1584
title: Improvement of hydrogen production with added fermentation residue and using two-stage anaerobic process under thermophilic temperature