cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/fkrwmr58g5.1
title: "Yeast Heterochromatin Only Stably Silences Weak Regulatory Elements by Altering Burst Duration" raw wide-field microscopy images

description: Raw wide-field microscopy images of wild-type and sir3 mutant strains of PP7-PHO5 at HMR driven by a set of enhancers/promoters used for measuring the frequency of synthesis of fluorescent mRNA foci. Acquisitions for each genotype were performed on replicate strains, performed on separate days, and the resulting foci counts for each data set were pooled (n &gt; 400 per genotype).

Details:
HMR_PP7_1
E1. 7360 - A1 enh/prm
E2. 7362 - PDC1 enh/prm
E3. 7364 - PGK1 enh/prm
E4. 7366 - RPL28 enh/prm
E5. 7368 - TDH3 enh/prm
E6. 7370 - ACO1 enh/prm
E7. 7372 - CDC19 enh/prm
E8. 7374 - ADE2 enh/prm
E9. 7376 - GAL1 enh/prm

HMR_PP7_2
E1. 7361 - A1 enh/prm
E2. 7363 - PDC1 enh/prm
E3. 7365 - PGK1 enh/prm
E4. 7367 - RPL28 enh/prm
E5. 7369 - TDH3 enh/prm
E6. 7371 - ACO1 enh/prm
E7. 7373 - CDC19 enh/prm
E8. 7375 - ADE2 enh/prm
E9. 7377 - GAL1 enh/prm

HMR_PP7_sir3D_1
S1. 7500 - A1 enh/prm
S2. 7502 - PDC1 enh/prm
S3. 7504 - PGK1 enh/prm
S4. 7506 - RPL28 enh/prm
S5. 7508 - TDH3 enh/prm
S6. 7510 - ACO1 enh/prm
S7. 7512 - CDC19 enh/prm
S8. 7514 - ADE2 enh/prm
S9. 7516 - GAL1 enh/prm

HMR_PP7_sir3D_2

S1. 7501 - A1 enh/prm
S2. 7503 - PDC1 enh/prm
S3. 7505 - PGK1 enh/prm
S4. 7507 - RPL28 enh/prm
S5. 7509 - TDH3 enh/prm
S6. 7511 - ACO1 enh/prm
S7. 7513 - CDC19 enh/prm
S8. 7515 - ADE2 enh/prm
S9. 7517 - GAL1 enh/prm
DOI: 10.17632/fkrwmr58g5.2
title: "Yeast Heterochromatin Only Stably Silences Weak Regulatory Elements by Altering Burst Duration" raw wide-field microscopy images

description: Raw wide-field microscopy images of wild-type and sir3 mutant strains of PP7-PHO5 at HMR driven by a set of enhancers/promoters used for measuring the frequency of synthesis of fluorescent mRNA foci. Acquisitions for each genotype were performed on replicate strains, performed on separate days, and the resulting foci counts for each data set were pooled (n &gt; 400 per genotype).

Details:
HMR_PP7_1
E1. 7360 - A1 enh/prm
E2. 7362 - PDC1 enh/prm
E3. 7364 - PGK1 enh/prm
E4. 7366 - RPL28 enh/prm
E5. 7368 - TDH3 enh/prm
E6. 7370 - ACO1 enh/prm
E7. 7372 - CDC19 enh/prm
E8. 7374 - ADE2 enh/prm
E9. 7376 - GAL1 enh/prm

HMR_PP7_2
E1. 7361 - A1 enh/prm
E2. 7363 - PDC1 enh/prm
E3. 7365 - PGK1 enh/prm
E4. 7367 - RPL28 enh/prm
E5. 7369 - TDH3 enh/prm
E6. 7371 - ACO1 enh/prm
E7. 7373 - CDC19 enh/prm
E8. 7375 - ADE2 enh/prm
E9. 7377 - GAL1 enh/prm

HMR_PP7_sir3D_1
S1. 7500 - A1 enh/prm
S2. 7502 - PDC1 enh/prm
S3. 7504 - PGK1 enh/prm
S4. 7506 - RPL28 enh/prm
S5. 7508 - TDH3 enh/prm
S6. 7510 - ACO1 enh/prm
S7. 7512 - CDC19 enh/prm
S8. 7514 - ADE2 enh/prm
S9. 7516 - GAL1 enh/prm

HMR_PP7_sir3D_2
S1. 7501 - A1 enh/prm
S2. 7503 - PDC1 enh/prm
S3. 7505 - PGK1 enh/prm
S4. 7507 - RPL28 enh/prm
S5. 7509 - TDH3 enh/prm
S6. 7511 - ACO1 enh/prm
S7. 7513 - CDC19 enh/prm
S8. 7515 - ADE2 enh/prm
S9. 7517 - GAL1 enh/prm
DOI: 10.17632/9jnf2jvghy.1
title: Caries-Spectra: A dataset of Enamel Caries

description: This dataset comprises a diverse collection of low-resolution images featuring two types of dental caries. Carefully selected from different patients, these caries offer a comprehensive and varied representation. The images were sourced from a medical clinic in Rajshahi, Bangladesh, spanning the time period from 2021 to 2022. Functioning as a valuable visual resource, the dataset provides a detailed portrayal of the distinctive characteristics of these caries, facilitating accurate classification. It is divided into two specific categories: Advanced Enamel Caries and Early Stage Enamel Caries, totaling 1600 original JPG images (800 images for each category). The dataset is organized into two sub-folders: "AdvanceEnamel_Carries" and "EarlyStageEnamel_Carries.
DOI: 10.17632/nv8rxdbw7k.1
title: Measurement of single Coffea canephora leaf spectro-polarimetric Bidirectional Reflectance Factor dataset and prediction model

description: Measurement of single Coffea canephora leaf spectro-polarimetric Bidirectional Reflectance Factor dataset of manuscript for Data in Brief Journal
DOI: 10.17632/nv8rxdbw7k.2
title: Measurement of single Coffea canephora leaf spectro-polarimetric Bidirectional Reflectance Factor dataset and prediction model

description: Measurement of single Coffea canephora leaf spectro-polarimetric Bidirectional Reflectance Factor dataset of manuscript for Data in Brief Journal
DOI: 10.17632/st7hsjzfw6.1
title: PQQ

description: This data is for article “Pyrroloquinoline quinone production with methanol as substrate by Hyphomicrobium sp. CGX1 screened based on high-throughput fluorescence-activated cell sorting”
DOI: 10.17632/hd84785jkf.1
title: Genomic and Transcriptomic Analyses Illuminates Unique Traits of Elusive Night Flowering Jasmine Parijat (Nyctanthes arbor-tristis)

description: The night-flowering Jasmine, Nyctanthes arbor-tristis also known as Parijat, is a perennial woody shrub belonging to the family Oleaceae. It is popular for its fragrant flowers that bloom in the night and is a potent source of secondary metabolites. However, knowledge about its genome and the expression of genes regulating flowering or secondary metabolite accumulation is lacking. In this study, we generate whole genome sequencing data to assemble the first de novo assembly of Parijat and use it for comparative genomics and demographic history reconstruction. The temporal dynamics of effective population size (Ne) experienced a positive influence of colder climates suggesting the switch to night flowering may have provided an evolutionary advantage. We employed multi-tissue transcriptome sequencing of floral stages/parts to obtain insights into the transcriptional regulation of nocturnal flower development and the production of volatiles/metabolites. Tissue-specific transcripts for mature flowers revealed key players in circadian regulation and flower development, including auxin pathway and cell wall modifying genes. Furthermore, we identified tissue-specific transcripts responsible for producing numerous secondary metabolites, mainly terpenoids and carotenoids. The diversity and specificity of Terpene Synthase (TPS) and CCDs (Carotenoid Cleavage Deoxygenases) mediate the bio-synthesis of specialised metabolites in Parijat. Our study establishes Parijat as a novel non-model species to understand the molecular mechanisms of nocturnal blooming and secondary metabolite production.
DOI: 10.17632/gswskr9c5g.1
title: Correlation between MAFLD and DII

description: Correlation between MAFLD and DII
DOI: 10.17632/h9wfssy253.1
title: "Yeast Heterochromatin Only Stably Silences Weak Regulatory Elements by Altering Burst Duration" raw wide-field microscopy images for variable core promoter experiments

description: Raw wide-field microscopy images of strains with PP7-PHO5 at HMR driven by the TDH3 enhancer and one of either the MATa1, PGK1, RPL28, or TDH3 core promoters, used for measuring the frequency of synthesis of fluorescent mRNA foci.

7368: TDH3e/TDH3p
8072: TDH3e/MATa1p
8074: TDH3e/PGK1p
8076: TDH3e/RPL28p
DOI: 10.17632/h9wfssy253.2
title: "Yeast Heterochromatin Only Stably Silences Weak Regulatory Elements by Altering Burst Duration" raw wide-field microscopy images for variable core promoter experiments

description: Raw wide-field microscopy images of strains with PP7-PHO5 at HMR driven by the TDH3 enhancer and one of either the MATa1, PGK1, RPL28, or TDH3 core promoters, used for measuring the frequency of synthesis of fluorescent mRNA foci.

Details:
7368: TDH3e/TDH3p
8072: TDH3e/MATa1p
8074: TDH3e/PGK1p
8076: TDH3e/RPL28p
DOI: 10.17632/hg8h73n5p3.1
title: Does the Gender Composition of Local Governments Matter for Firms’ Information Environment? Evidence from China

description: This dataset is associated with the paper titled "Does the Gender Composition of Local Governments Matter for Firms’ Information Environment? Evidence from China."
DOI: 10.17632/hg8h73n5p3.2
title: LGO GENDER AND INFORMATION EVIRONMENT

description: This dataset is associated with the paper titled "Does the Gender Composition of Local Governments Matter for Firms’ Information Environment? Evidence from China."
DOI: 10.17632/nb449kbyjf.1
title: Tyrosine Kinase Inhibitors Remodel Immune Microenvironment of Lung Cancer Brain Metastasis and Potentiate Responsiveness to CTLA-4 Blockade

description: We present a comprehensive analysis of TME composition and treatment-induced dynamic changes within LCBM harboring different RTK mutations.
DOI: 10.17632/jg5g4477k5.1
title: Code S1 Merging loom files.

description: Code S1 Merging loom files.
DOI: 10.17632/2fx2v2gt8c.1
title: Table S1 Markers used for cell annotation.

description: Table S1 Markers used for cell annotation.
DOI: 10.17632/tcvgccdy4r.1
title: Supplementary Data (StemnesScoRe: An R package to estimate the stemness of glioma cancer cells at single-cell resolutions)

description: Supplementary Data of the research article: "StemnesScoRe."
DOI: 10.17632/tcvgccdy4r.2
title: Supplementary Data (StemnesScoRe: An R package to estimate the stemness of glioma cancer cells at single-cell resolution)

description: Supplementary Data of the research article: 
"StemnesScoRe: An R package to estimate the stemness of glioma cancer cells at single-cell resolution."
DOI: 10.17632/p27gf4v8yt.1
title: Incidence of Lung Transplantation-associated Acute Kidney Injury

description: Data on the incidence of acute kidney injury associated with lung transplantation, mortality, and utilization of renal replacement therapy were screened by searching the primary literature, and then Meta-analysis was performed by the software Stata 15 and using a random-effects model.
DOI: 10.17632/ynvngd35ht.1
title: Medicaid formularies for acne treatments are difficult to access and reflect inconsistent coverage policies

description: Supplemental table for study investigating acne medication coverage in the United States under Medicaid plans.
DOI: 10.17632/ynvngd35ht.2
title: Medicaid formularies for acne treatments are difficult to access and reflect inconsistent coverage policies

description: Supplemental table for study investigating acne medication coverage in the United States under Medicaid plans.
DOI: 10.17632/bcyc32c6zx.1
title: original data

description: original data
DOI: 10.17632/cf55gtbp56.1
title: CB-SC ameliorate allogeneic responses via exosomal component in vitro.

description: This data set contains sample files for each figure used in the article titled: Cord Blood Derived-Multipotent Stem Cells Ameliorate Alloreactive Responses and this Effect is Associated with Exosomal Microvesicles in vitro
DOI: 10.17632/npcx9ckyts.1
title: Review of literature on zonal desintegration

description: Detail description of literature review on zonal desintegration.
DOI: 10.17632/7ky724g4jf.1
title: Metabolomic profile of H1N1-infected human lung epithelial A549 cell after mannose treatment.

description: To comprehensively understand the metabolic alterations induced by mannose treatment, we conducted a targeted metabolomics analysis with a specific emphasis on glucose homeostasis. Our study focused on human lung epithelial A549 cells infected with H1N1 virus. Intriguingly, we observed a significant increase in the levels of 3-phosphoglycerate and lactic acid following H1N1 infection, indicating perturbations in glycolysis. However, these metabolic changes were effectively reversed upon mannose treatment. Additionally, we investigated the impact of mannose treatment on the tricarboxylic acid (TCA) cycle, which is downstream of glycolysis. Our results revealed a similar trend of metabolic alterations in the TCA cycle, suggesting that mannose treatment not only influences the pools of glycolytic intermediates but also affects the metabolites associated with the TCA cycle. These findings shed light on the broader impact of mannose treatment on glucose metabolism and provide valuable insights into the potential therapeutic implications for combating viral infections.

To investigate the effects of mannose treatment on glycolysis and the tricarboxylic acid (TCA) cycle, we conducted a series of experiments using A549 cells. The cells were pre-treated with either mannose (25mM) or PBS overnight. Subsequently, the cells were infected with H1N1 virus at a multiplicity of infection (MOI) of 5 for an additional 24 hours. After the treatment period, targeted metabolomics analysis of glycolysis and the TCA cycle was performed. The obtained results were normalized based on cell number. Statistical analysis was conducted using one-way ANOVA with Dunnett's post-hoc test, with multiple comparisons against the H1N1-PBS group. Each treatment was repeated four times (n=4) to ensure robustness and reliability of the findings. These experiments provide valuable insights into the impact of mannose treatment on the metabolic pathways associated with viral infection, offering potential avenues for therapeutic interventions.
DOI: 10.17632/crt59n8sbs.1
title: ChatGPT vs. Google in terms of navigation performance and self-learning success

description: Research purpose was to compare students' experiences of learning code via ChatGPT and Google in terms of navigation performance and academic success. The independent variables was age, gender, JavaScript experience, and ChatGPT usage, while the dependent variables was Navigation Performance Score (Disorientation, Satisfaction, Cognitive Load) and Test Score. Data collected from 471 fully distance education students from Web Design and Coding program. Navigation performance was measured using the Hyper-MNP scale developed by Firat and Kabakci Yurdakul (2016). The scale consists of a total of 15 items, 7 of which are positive statements and 8 of which are negative statements. The scale has a three-factor structure including disorientation (6 items), satisfaction (5 items), and cognitive load (4 items). The items are 5-point Likert type. Welch's t-test results showed a significant difference in favor of ChatGPT for all dependent variables.
DOI: 10.17632/h7ky6rt9z7.1
title: DOSLP:Dataset of Student Location Prediction inside the University in India version2

description: When a student arrives on campus, especially in the morning or evening, it is crucial in the field of education to observe their Point of Interest Location (POIL). Thus, students would frequently visit various POILs on campus, such as the library and cafeteria. To gather the student POIL dataset from private technical universities in India, we devised and constructed a web interface for our study. The director of the computer science department at a university in India provided a letter of authorization. To make the dataset suitable for pattern analysis and student POIL prediction on university campuses, sensitive and identifiable student information has been removed. Moreover, we preprocess, analyze, and classify the number of students who spend time in the various university POILs by utilizing the student dataset. We also classify the gender distribution of the student population that spends time in the various campus POILs.
DOI: 10.17632/ndfy3cs2mb.1
title: DOSLP:Dataset of Student Location Prediction inside the University in India

description: In the field of education it is very important to notice the students location once they have entered inside the university campus from morning to evening. So students will visit different locations inside the university campus frequently like cafeteria, library etc. In our research we have  designed and developed the web interface to collect the students location dataset from private technical university in India. A permission letter was granted from the university computer science program director from University, India. The dataset is anonymised by eliminating sensitive and identifiable students’ information and prepared to be used for location prediction of students location inside the university campus. Also by using the students dataset we are preprocessing ,and analyzing number of students spending time in the different location of the university and  also we are categorizing the gender of the students ratio who spends time in the different location of the campus.
DOI: 10.17632/ndfy3cs2mb.2
title: DOSLP:Dataset of Student Location Prediction inside the University in India

description: In the field of education it is very important to notice the students location once they have entered inside the university campus from morning to evening. So students will visit different locations inside the university campus frequently like cafeteria, library etc. In our research we have designed and developed the web interface to collect the students location dataset from private technical university in India. A permission letter was granted from the university computer science program director from University, India. The dataset is anonymised by eliminating sensitive and identifiable students’ information and prepared to be used for location prediction of students location inside the university campus. Also by using the students dataset we are preprocessing ,and analyzing number of students spending time in the different location of the university and also we are categorizing the gender of the students ratio who spends time in the different location of the campus.
DOI: 10.17632/ndfy3cs2mb.3
title: DOSLP:Dataset of Student Location Prediction inside the University in India

description: In the field of education it is very important to notice the students location once they have entered inside the university campus from morning to evening. So students will visit different locations inside the university campus frequently like cafeteria, library etc. In our research we have designed and developed the web interface to collect the students location dataset from private technical university in India. A permission letter was granted from the university computer science program director from University, India. The dataset is anonymised by eliminating sensitive and identifiable students’ information and prepared to be used for location prediction of students location inside the university campus. Also by using the students dataset we are preprocessing ,and analyzing number of students spending time in the different location of the university and also we are categorizing the gender of the students ratio who spends time in the different location of the campus.
DOI: 10.17632/f59x9g3syv.1
title: Appendix. The correlation matrix

description: The correlation matrix among all variables.
DOI: 10.17632/8gpwymv43p.1
title: Investigating the effects of fentanyl and nitroglycerin on hemodynamic changes during laryngoscopy; A Randomized Trial

description: Laryngoscopy is the required procedures in general anesthesia that can cause cardiovascular disorders for the patient. Various pharmacological methods are used to reduce unwanted laryngoscopy responses. The present study aimed to compare the effects of fentanyl and nitroglycerin spray on hemodynamic responses during laryngoscopy
DOI: 10.17632/gptx4bd7ss.1
title: Reprogramming host d-mannose metabolism for reduced virus replication and elevated tolerance of inflammatory damage 

description: Host survival during acute viral infections depends on the elimination of pathogens and mitigation of tissue damage otherwise antivirals or immunomodulatory treatments are essential. One mechanism affecting tolerance is the intensity of an immune response. An overly exuberant immune response can cause collateral damage through immune effectors and because of the energy allocated away from other physiological functions. Herein, we report that the modulation of d-mannose flux, rewires the virus-triggered immunometabolic response cascade, thus ameliorating tissue damage. The beneficial role of d-mannose is achievable via competing with glucose for the same transporter GLUT and same hexokinase. Such alterations impair glucose metabolism by raising intracellular mannose-6-phosphate levels, and result in the suppression of succinate-mediated hypoxia-inducible factor-1α (HIF-1α) activation, imposing a consequent reduction of virus-induced proinflammatory cytokines production including interleukin-1β. As expected, combinatorial treatment of the mannose and FDA-approved antiviral monotherapy exhibits in vivo synergy, particularly in a delayed treatment setting. We found that phosphomannose isomerase (PMI) activity dictates the host response to mannose. Ectopic overexpression of PMI and/or supplement of downstream PMI metabolite fructose 6-phosphate diminish the protective role of mannose. We also found that PMI is a druggable target with broad-spectrum potential. Both genetic depletion and pharmacological inhibition of PMI suppress a panel of virus replication. Mechanistically, PMI inhibition affects viral surface protein glycosylation thus blocks virus entry. These results highlight a mannose-centered and dual therapeutic strategy for therapeutic cure of viral diseases, that is the PMI-glycosylation axis for pathogen clearance, and HIF1α-IL1β axis for inflammation control.
DOI: 10.17632/gptx4bd7ss.2
title: Reprogramming host d-mannose metabolism for reduced virus replication and elevated tolerance of inflammatory damage

description: Host survival during acute viral infections depends on the elimination of pathogens and mitigation of tissue damage otherwise antivirals or immunomodulatory treatments are essential. One mechanism affecting tolerance is the intensity of an immune response. An overly exuberant immune response can cause collateral damage through immune effectors and because of the energy allocated away from other physiological functions. Herein, we report that the modulation of d-mannose flux, rewires the virus-triggered immunometabolic response cascade, thus ameliorating tissue damage. The beneficial role of d-mannose is achievable via competing with glucose for the same transporter GLUT and same hexokinase. Such alterations impair glucose metabolism by raising intracellular mannose-6-phosphate levels, and result in the suppression of succinate-mediated hypoxia-inducible factor-1α (HIF-1α) activation, imposing a consequent reduction of virus-induced proinflammatory cytokines production including interleukin-1β. As expected, combinatorial treatment of the mannose and FDA-approved antiviral monotherapy exhibits in vivo synergy, particularly in a delayed treatment setting. We found that phosphomannose isomerase (PMI) activity dictates the host response to mannose. Ectopic overexpression of PMI and/or supplement of downstream PMI metabolite fructose 6-phosphate diminish the protective role of mannose. We also found that PMI is a druggable target with broad-spectrum potential. Both genetic depletion and pharmacological inhibition of PMI suppress a panel of virus replication. Mechanistically, PMI inhibition affects viral surface protein glycosylation thus blocks virus entry. These results highlight a mannose-centered and dual therapeutic strategy for therapeutic cure of viral diseases, that is the PMI-glycosylation axis for pathogen clearance, and HIF1α-IL1β axis for inflammation control.
DOI: 10.17632/kpkghhy73c.1
title: Supplementary Materials

description: Supplementary Materials and Appendix
DOI: 10.17632/jgvxn8bw77.1
title: Data: Step propagation controls pore shape evolution when mineral walls dissolve under saturation gradients

description: Data of the results obtained in the paper "Step propagation controls pore shape evolution when mineral walls dissolve under saturation gradients". The data set follows the figures shown in the paper.
DOI: 10.17632/n8p5f77zrg.1
title: ECMODE-D-23-00110 Money Laundering Governance and Income Shifting: Evidence from Australian Financial Institutions

description: ECMODE-D-23-00110 Money Laundering Governance and Income Shifting: Evidence from Australian Financial Institutions
Do file include all regression tables.
and dta file is our main database used after calculating our variables.