cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12046509.v1
title: Supporting files_Table S1_Taekwondo

description: Training schedule and average session intensity in tested taekwondo athletes in two supplementation periods.<br>
DOI: 10.6084/m9.figshare.12046443
title: Based on Multi-dimensional Software Data and Complex Networks for Code Smells Detection

description: Code smell is the product of improper design and operation, which may be introduced in many situations. It will cause problems for further software development and maintenance. Currently, most code smells detection methods detect through a single type of software data. There are restrictions on detecting code smells with complex definitions and characteristics. In this paper, we propose a method of applying multi-dimensional software data. This method builds complex network through structural data and historical version data, and determines the code smell instances by searching the network. We designed two smells detection strategies and evaluated them in four open source projects. Judging from the results, we demonstrate that our approach has 23% and 15% higher F-measures on Shotgun Surgery and Parallel Inheritance Hierarchy than the existing most advanced detection methods. The detection method based on multi-dimensional software data and complex network is effective, and this software network can also provides guidance for data-driven software research.
DOI: 10.6084/m9.figshare.12046509.v2
title: Supporting files_Table S1_Taekwondo

description: Training schedule and average session intensity in tested taekwondo athletes in two supplementation periods.<br>
DOI: 10.6084/m9.figshare.12046440
title: Metadata record for: The ANI-1ccx and ANI-1x data sets, coupled-cluster and density functional theory properties for molecules

description: This dataset contains key characteristics about the data described in the Data Descriptor The ANI-1ccx and ANI-1x data sets, coupled-cluster and density functional theory properties for molecules. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12046440.v1
title: Metadata record for: The ANI-1ccx and ANI-1x data sets, coupled-cluster and density functional theory properties for molecules

description: This dataset contains key characteristics about the data described in the Data Descriptor The ANI-1ccx and ANI-1x data sets, coupled-cluster and density functional theory properties for molecules. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12046407
title: Codium data_raw alignment_FCOtufA sequences.fas

description: Herbarium and South Korea sequences available inside raw alignment.<br>
DOI: 10.6084/m9.figshare.12046407.v2
title: Codium data_raw alignment_FCOtufA sequences.fas

description: Herbarium and South Korea sequences available inside raw alignment.<br>
DOI: 10.6084/m9.figshare.12046407.v1
title: Codium data_raw alignment_FCOtufA sequences.fas

description: Herbarium and South Korea sequences available inside raw alignment.<br>
DOI: 10.6084/m9.figshare.12046380
title: Splicing Community Patterns and Smells: A Preliminary Study

description: Software engineering projects are now more than ever a community effort. In the recent past, researchers have shown that their success may not only depend on source code quality, but also on other aspects like the balance of distance, culture, global engineering practices, and more. In such a scenario, understanding the characteristics of the community around a project and foresee possible problems may be the key to develop successful systems. In this paper,we focus on this research problem and propose an exploratorystudy on the relation between community patterns, i.e., recurrentmixes of organizational or social structure types, and smells, i.e.,sub-optimal patterns across the organizational structure of a softwaredevelopment community that may be precursors of some sortof social debt. We exploit association rule mining to discover frequentrelations between them. Our findings show that differentorganizational patterns are connected to different forms of sociotechnicalproblems, possibly suggesting that practitioners shouldput in place specific preventive actions aimed at avoiding the emergenceof community smells depending on the organization of theproject.
DOI: 10.6084/m9.figshare.12046326
title: Copy of all project data from A poor substitute for the real thing: captive-reared monarch butterflies are weaker, paler and have less elongated wings than wild migrants

description: For many animals and insects that are experiencing dramatic population declines, the only recourse for conservationists is captive rearing. To ensure success, reared individuals should be biologically indistinct from those in the wild. We tested if this is true with monarch butterflies, <i>Danaus plexippus</i>, which are increasingly being reared for release by citizens and commercial breeders. Since late-summer monarchs should be as migration capable as possible for surviving the arduous long-distance migration, we evaluated four migration-relevant traits across two groups of captive-reared monarchs (<i>n</i> = 41 and 42) and one group of wild-caught migrants (<i>n</i> = 41). Monarchs (descendants of wild individuals) were reared from eggs to adulthood either in a warm indoor room next to a window, or in an incubator that mimicked late-summer conditions. Using an apparatus consisting of a perch mounted to an electronic force gauge, we assessed ‘grip strength' of all groups, then used image analysis to measure forewing size, pigmentation and elongation. In three of the four traits, reared monarchs underperformed compared to wild ones, even those reared under conditions that should have produced migration-ready individuals. The average strength of reared monarchs combined was 56% less than the wild group, even when accounting for size. Their orange wing colour was paler (an indicator of poor condition and flight ability) and their forewings were less elongated (elongation is associated with migration propensity) than wild monarchs. The reason(s) behind these effects is unknown but could stem from the frequent disturbance and/or handling of reared monarchs, or the fact that rearing removes the element of natural selection from all stages. Regardless, these results explain prior tagging studies that showed reared monarchs have lower migratory success compared to wild.
DOI: 10.6084/m9.figshare.12046326.v1
title: Copy of all project data from A poor substitute for the real thing: captive-reared monarch butterflies are weaker, paler and have less elongated wings than wild migrants

description: For many animals and insects that are experiencing dramatic population declines, the only recourse for conservationists is captive rearing. To ensure success, reared individuals should be biologically indistinct from those in the wild. We tested if this is true with monarch butterflies, <i>Danaus plexippus</i>, which are increasingly being reared for release by citizens and commercial breeders. Since late-summer monarchs should be as migration capable as possible for surviving the arduous long-distance migration, we evaluated four migration-relevant traits across two groups of captive-reared monarchs (<i>n</i> = 41 and 42) and one group of wild-caught migrants (<i>n</i> = 41). Monarchs (descendants of wild individuals) were reared from eggs to adulthood either in a warm indoor room next to a window, or in an incubator that mimicked late-summer conditions. Using an apparatus consisting of a perch mounted to an electronic force gauge, we assessed ‘grip strength' of all groups, then used image analysis to measure forewing size, pigmentation and elongation. In three of the four traits, reared monarchs underperformed compared to wild ones, even those reared under conditions that should have produced migration-ready individuals. The average strength of reared monarchs combined was 56% less than the wild group, even when accounting for size. Their orange wing colour was paler (an indicator of poor condition and flight ability) and their forewings were less elongated (elongation is associated with migration propensity) than wild monarchs. The reason(s) behind these effects is unknown but could stem from the frequent disturbance and/or handling of reared monarchs, or the fact that rearing removes the element of natural selection from all stages. Regardless, these results explain prior tagging studies that showed reared monarchs have lower migratory success compared to wild.
DOI: 10.6084/m9.figshare.12046284
title: Supplement prediction from Predicting the short-term success of human influenza virus variants with machine learning

description: Seasonal influenza viruses are constantly changing and produce a different set of circulating strains each season. Small genetic changes can accumulate over time and result in antigenically different viruses; this may prevent the body’s immune system from recognizing those viruses. Due to rapid mutations, in particular, in the haemagglutinin (HA) gene, seasonal influenza vaccines must be updated frequently. This requires choosing strains to include in the updates to maximize the vaccines’ benefits, according to estimates of which strains will be circulating in upcoming seasons. This is a challenging prediction task. In this paper, we use longitudinally sampled phylogenetic trees based on HA sequences from human influenza viruses, together with counts of epitope site polymorphisms in HA, to predict which influenza virus strains are likely to be successful. We extract small groups of taxa (subtrees) and use a suite of features of these subtrees as key inputs to the machine learning tools. Using a range of training and testing strategies, including training on H3N2 and testing on H1N1, we find that successful prediction of future expansion of small subtrees is possible from these data, with accuracies of 0.71–0.85 and a classifier ‘area under the curve’ 0.75–0.9.
DOI: 10.6084/m9.figshare.12046284.v1
title: Supplement prediction from Predicting the short-term success of human influenza virus variants with machine learning

description: Seasonal influenza viruses are constantly changing and produce a different set of circulating strains each season. Small genetic changes can accumulate over time and result in antigenically different viruses; this may prevent the body’s immune system from recognizing those viruses. Due to rapid mutations, in particular, in the haemagglutinin (HA) gene, seasonal influenza vaccines must be updated frequently. This requires choosing strains to include in the updates to maximize the vaccines’ benefits, according to estimates of which strains will be circulating in upcoming seasons. This is a challenging prediction task. In this paper, we use longitudinally sampled phylogenetic trees based on HA sequences from human influenza viruses, together with counts of epitope site polymorphisms in HA, to predict which influenza virus strains are likely to be successful. We extract small groups of taxa (subtrees) and use a suite of features of these subtrees as key inputs to the machine learning tools. Using a range of training and testing strategies, including training on H3N2 and testing on H1N1, we find that successful prediction of future expansion of small subtrees is possible from these data, with accuracies of 0.71–0.85 and a classifier ‘area under the curve’ 0.75–0.9.
DOI: 10.6084/m9.figshare.12046242
title: AquaDNA metabarcodes of European Benthic fauna

description: This is ta complete database of metabarcodes for freswhater benthic fauna of Europe. It includes:- sequences generated specifically from 1514 individuals. Each individual has been sequenced at three markers: Euka02, Inse01 and BF1_BR2-COI (Guardiola et al 2015; Taberlet et al. 2018; Elbrecht & Leese,2017) sequences retrieved from GenBank that correspond to these three metabarcodes.<br>Only sequences from benthic genera belonging to the European fauna are included.<br>
DOI: 10.6084/m9.figshare.12046206
title: Dataset S1 from Reproduction deep inside wood: a low O<sub>2</sub> and high CO<sub>2</sub> environment promotes egg production by termite queens

description: This file includes weights of kings and queens, gas measurement, gas absorption and gas treatment assay
DOI: 10.6084/m9.figshare.12046209
title: Sea_Glider_Observations_NRS_2015-6

description: Selected profiles and transects from Seaglider observations (temperature, salinity, dissolved oxygen and chlorophyll-a), deployed in the North Red Sea from late September 2015 through mid-May 2016.
DOI: 10.6084/m9.figshare.12046206.v1
title: Dataset S1 from Reproduction deep inside wood: a low O<sub>2</sub> and high CO<sub>2</sub> environment promotes egg production by termite queens

description: This file includes weights of kings and queens, gas measurement, gas absorption and gas treatment assay
DOI: 10.6084/m9.figshare.12046209.v2
title: Sea_Glider_Observations_NRS_2015-6

description: Selected profiles and transects from Seaglider observations (temperature, salinity, dissolved oxygen and chlorophyll-a), deployed in the North Red Sea from late September 2015 through mid-May 2016.
DOI: 10.6084/m9.figshare.12046209.v1
title: Profiles_Onshore_Offshore

description: Selected profiles from Seaglider data (temperature, salinity, dissolved oxygen and chlorophyll-a), deployed in the North Red Sea from late September 2015 through mid-May 2016.
DOI: 10.6084/m9.figshare.12046170
title: Supplementary Material for: Altered Epidermal Permeability Barrier Function in the Uninvolved Skin Supports a Role of Epidermal Dysfunction in the Pathogenesis of Occupational Hand Eczema

description: Although a compromised epidermal permeability barrier can contribute to the development of contact dermatitis, whether subjects with hand eczema display abnormalities in baseline epidermal permeability barrier function in their uninvolved skin remains unknown. The aim of the present study was to assess epidermal permeability barrier function in subjects with and without hand eczema in clothing manufacturers. Upon approval by the institutional review board, volunteers were recruited from clothing manufacturers in Guangzhou City, China. An 11-item questionnaire was used to collect general data from the volunteers. The diagnoses of self-proclaimed hand eczema were further confirmed by a dermatologist. Epidermal biophysical properties, including transepidermal water loss (TEWL) rates, stratum corneum hydration and skin surface pH were measured on the flexural surface of the left forearm in all volunteers. Epidermal biophysical properties were compared among cohorts of subjects with active hand eczema, a prior history of hand eczema and without any history of hand eczema. A total of 650 questionnaires were collected from 462 females and 188 males, with a mean age of 36.7 ± 0.46 years (range 16–69 years; 95% CI 35.8–37.59). Thirty-five subjects (5.4%) currently had hand eczema, while 28 subjects (4.3%) reported a prior history of hand eczema that was inactive currently. The prevalence of hand eczema did not differ significantly between genders. Neither a prior personal nor a family history of allergies was associated with the prevalence of hand eczema, but certain occupations and frequent contact with disinfectants were independently associated with the prevalence of hand eczema. In the overall cohort, males displayed higher TEWL rates and stratum corneum hydration levels than did females. Both skin surface pH and TEWL rates differed significantly among normal controls and subjects with active hand eczema or a prior history of hand eczema (<i>p</i> &lt; 0.05). In conclusion, the uninvolved skin site of subjects with hand eczema exhibits abnormalities in epidermal perme­ability barrier, supporting a pathogenic role of epidermal dysfunction in hand eczema. Whether subjects with hand eczema in other occupations also display altered epidermal function on uninvolved skin remains to be explored.
DOI: 10.6084/m9.figshare.12046152
title: Data used; detailed QCA calibration rules; note on QCA minimisation procedure

description: Contains a summary data on 10 CEE countries for the period from 1990 to 2014, covering the following variables: inclusiveness of access to nationality rules, duration of left-wing government rule, electoral strength of far-right parties, importance of national minority issues, the size of kin/expatriate populations.<br>Describes the calibration rules used in the comparative study.<br>Provides more details on the QCA.
DOI: 10.6084/m9.figshare.12046161.v1
title: Transects_NRS

description: Selected transects from Seaglider observations (temperature, salinity, dissolved oxygen and chlorophyll-a), deployed in the North Red Sea from late September 2015 through mid-May 2016.
DOI: 10.6084/m9.figshare.12046146
title: Supplementary Material for: Specific Genomic Alterations in High-Grade Pulmonary Neuroendocrine Tumours with Carcinoid Morphology

description: <b><i>Introduction:</i></b> High-grade lung neuroendocrine tumours with carcinoid morphology have been recently reported; they may represent the thoracic counterparts of grade 3 digestive neuroendocrine tumours. We aimed to study their genetic landscape including analysis of tumoral heterogeneity. <b><i>Methods:</i></b> Eleven patients with high-grade (&gt;20% Ki-67 and/or &gt;10 mitoses) lung neuroendocrine tumours with a carcinoid morphology were included. We analysed copy number variations, somatic mutations, and protein expression in 16 tumour samples (2 samples were available for 5 patients allowing us to study spatial and temporal heterogeneity). <b><i>Results:</i></b> Genomic patterns were heterogeneous ranging from “quiet” to tetraploid, heavily rearranged genomes. Oncogene mutations were rare and most genetic alterations targeted tumour suppressor genes. Chromosomes 11 (7/11), 3 (6/11), 13 (4/11), and 6–17 (3/11) were the most frequently lost. Altered tumour suppressor genes were common to both carcinoids and neuroendocrine carcinomas, involving different pathways including chromatin remodelling (<i>KMT2A</i>, <i>ARID1A</i>, <i>SETD2</i>, <i>SMARCA2</i>, <i>BAP1</i>, <i>PBRM1</i>, <i>KAT6A</i>), DNA repair (<i>MEN1</i>, <i>POLQ</i>, <i>ATR</i>, <i>MLH1</i>, <i>ATM</i>), cell cycle (<i>RB1</i>, <i>TP53</i>, <i>CDKN2A</i>), cell adhesion (<i>LATS2</i>, <i>CTNNB1</i>, <i>GSK3B</i>) and metabolism (<i>VHL</i>). Comparative spatial/temporal analyses confirmed that these tumours emerged from clones of lower aggressivity but revealed that they were genetically heterogeneous accumulating “neuroendocrine carcinoma-like” genetic alterations through progression such as <i>TP53/RB1</i> alterations. <b><i>Conclusion:</i></b> These data confirm the importance of chromatin remodelling genes in pulmonary carcinoids and highlight the potential role of <i>TP53</i> and <i>RB1</i> to drive the transformation in more aggressive high-grade tumours.
DOI: 10.6084/m9.figshare.12046146.v1
title: Supplementary Material for: Specific Genomic Alterations in High-Grade Pulmonary Neuroendocrine Tumours with Carcinoid Morphology

description: <b><i>Introduction:</i></b> High-grade lung neuroendocrine tumours with carcinoid morphology have been recently reported; they may represent the thoracic counterparts of grade 3 digestive neuroendocrine tumours. We aimed to study their genetic landscape including analysis of tumoral heterogeneity. <b><i>Methods:</i></b> Eleven patients with high-grade (&gt;20% Ki-67 and/or &gt;10 mitoses) lung neuroendocrine tumours with a carcinoid morphology were included. We analysed copy number variations, somatic mutations, and protein expression in 16 tumour samples (2 samples were available for 5 patients allowing us to study spatial and temporal heterogeneity). <b><i>Results:</i></b> Genomic patterns were heterogeneous ranging from “quiet” to tetraploid, heavily rearranged genomes. Oncogene mutations were rare and most genetic alterations targeted tumour suppressor genes. Chromosomes 11 (7/11), 3 (6/11), 13 (4/11), and 6–17 (3/11) were the most frequently lost. Altered tumour suppressor genes were common to both carcinoids and neuroendocrine carcinomas, involving different pathways including chromatin remodelling (<i>KMT2A</i>, <i>ARID1A</i>, <i>SETD2</i>, <i>SMARCA2</i>, <i>BAP1</i>, <i>PBRM1</i>, <i>KAT6A</i>), DNA repair (<i>MEN1</i>, <i>POLQ</i>, <i>ATR</i>, <i>MLH1</i>, <i>ATM</i>), cell cycle (<i>RB1</i>, <i>TP53</i>, <i>CDKN2A</i>), cell adhesion (<i>LATS2</i>, <i>CTNNB1</i>, <i>GSK3B</i>) and metabolism (<i>VHL</i>). Comparative spatial/temporal analyses confirmed that these tumours emerged from clones of lower aggressivity but revealed that they were genetically heterogeneous accumulating “neuroendocrine carcinoma-like” genetic alterations through progression such as <i>TP53/RB1</i> alterations. <b><i>Conclusion:</i></b> These data confirm the importance of chromatin remodelling genes in pulmonary carcinoids and highlight the potential role of <i>TP53</i> and <i>RB1</i> to drive the transformation in more aggressive high-grade tumours.
DOI: 10.6084/m9.figshare.12046134
title: Dataset from Division of labour promotes the spread of information in colony emigrations by the ant <i>Temnothorax rugatulus</i>

description: Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
DOI: 10.6084/m9.figshare.12046152.v1
title: Data used; detailed QCA calibration rules; note on QCA minimisation procedure

description: Contains a summary data on 10 CEE countries for the period from 1990 to 2014, covering the following variables: inclusiveness of access to nationality rules, duration of left-wing government rule, electoral strength of far-right parties, importance of national minority issues, the size of kin/expatriate populations.<br>Describes the calibration rules used in the comparative study.<br>Provides more details on the QCA.
DOI: 10.6084/m9.figshare.12046134.v1
title: Dataset from Division of labour promotes the spread of information in colony emigrations by the ant <i>Temnothorax rugatulus</i>

description: Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
DOI: 10.6084/m9.figshare.12045876.v2
title: Archive 2.zip

description: test
DOI: 10.6084/m9.figshare.12045867
title: Supplementary Data

description: BMGF Codebook Mumbai: Codebook for MumbaiBMGF Codebook_Patna : Codebook for PatnaBMGF_Mumbai Datasheet Questnr: Interview Questionnaire for MumbaiBMGF_Patna Datasheet Questnr: Interview Questionnaire for PatnaFinal_interview_Guide_Mum: Interview guide for MumbaiFinal_Interview_Guide_Patna: Interview guide for Patna<br>
DOI: 10.6084/m9.figshare.12045867.v1
title: Supplementary Data

description: BMGF Codebook Mumbai: Codebook for MumbaiBMGF Codebook_Patna : Codebook for PatnaBMGF_Mumbai Datasheet Questnr: Interview Questionnaire for MumbaiBMGF_Patna Datasheet Questnr: Interview Questionnaire for PatnaFinal_interview_Guide_Mum: Interview guide for MumbaiFinal_Interview_Guide_Patna: Interview guide for Patna<br>
DOI: 10.6084/m9.figshare.12045843
title: Fig1a.dm3

description: Fig1a.dm3
DOI: 10.6084/m9.figshare.12045843.v1
title: Fig1a.dm3

description: Fig1a.dm3
DOI: 10.6084/m9.figshare.12045711
title: Additional file 2 of Factors associated with the prescribing of high-dose opioids in primary care: a systematic review and meta-analysis

description: Additional file 2. Data File. This file contains all raw data (factors) extracted from the six included studies.
DOI: 10.6084/m9.figshare.12045711.v1
title: Additional file 2 of Factors associated with the prescribing of high-dose opioids in primary care: a systematic review and meta-analysis

description: Additional file 2. Data File. This file contains all raw data (factors) extracted from the six included studies.