cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4308905
title: Exploring the Motivations for Punishment: Framing and Country-Level Effects

description: These are the data to accompany the publication: Bone JE, McAuliffe K, Raihani NJ (2016) Exploring the Motivations for Punishment: Framing and Country-Level Effects. PLoS ONE 11(8): e0159769. doi:10.1371/journal.pone.0159769<br>
DOI: 10.6084/m9.figshare.4308911
title: The effect of $1, $5 and $10 stakes in an online dictator game.PloS one 8.8 (2013): e73131.

description: Data to accompany <br>Raihani, Nichola J., Ruth Mace, and Shakti Lamba. "The effect of $1, $5 and $10 stakes in an online dictator game." <i>PloS one</i> 8.8 (2013): e73131.
DOI: 10.6084/m9.figshare.4308914.v1
title: Raihani, Nichola J., and Redouan Bshary. "A positive effect of flowers rather than eye images in a large-scale, cross-cultural dictator game." Proc. R. Soc. B. The Royal Society, 2012.

description: Datasets to accompany <br>Raihani, Nichola J., and Redouan Bshary. "A positive effect of flowers rather than eye images in a large-scale, cross-cultural dictator game." <i>Proc. R. Soc. B</i>. The Royal Society, 2012.
DOI: 10.6084/m9.figshare.4308911.v1
title: The effect of $1, $5 and $10 stakes in an online dictator game.PloS one 8.8 (2013): e73131.

description: Data to accompany <br>Raihani, Nichola J., Ruth Mace, and Shakti Lamba. "The effect of $1, $5 and $10 stakes in an online dictator game." <i>PloS one</i> 8.8 (2013): e73131.
DOI: 10.17633/rd.brunel.4308902
title: The Effect of a Sequential Structure of Practice for the Training of Perceptual-Cognitive skills in Tennis Dataset

description: Data set and SPSS outputs for the paper entitled 'The Effect of a Sequential Structure of Practice for the Training of Perceptual-Cognitive skills in Tennis'
DOI: 10.17633/rd.brunel.4308902.v1
title: The Effect of a Sequential Structure of Practice for the Training of Perceptual-Cognitive skills in Tennis Dataset

description: Data set and SPSS outputs for the paper entitled 'The Effect of a Sequential Structure of Practice for the Training of Perceptual-Cognitive skills in Tennis'
DOI: 10.6084/m9.figshare.4308818
title: Taxonomic resolution and treatment effects – alone and combined – can mask significant biodiversity reductions

description: Taxonomic resolution or uncertainty poses an important problem in biodiversity research. Assessment of biodiversity at the species level is most informative and preferred, but requires effort and expertise. Alternatively, researchers often bin species into higher taxa because they are unable to recognize them, or to save money and time. Here we analyse, by simulation and analytical modelling, the combined effects of dose-dependent mortality and taxonomic binning on biodiversity indices for a fictitious community of organisms. We asked (1) how binning species in a sample into higher taxa significantly affects biodiversity measures, and (2) whether dose-dependent mortality effects, alone or in combination with taxonomic uncertainty, are duly captured by classic biodiversity indices. Our study shows that haphazard binning into various taxonomic levels is legitimate and preferable to orderly binning (all taxa binned at the same level), because it provides the best resolution. We further show that binning will regularly obscure statistical detection of biodiversity differences, if only due to scaling of mean and variance. Also, treatment effects in combination with taxonomic uncertainty can introduce estimation biases of at times complex nonlinear and non-intuitive nature under any taxonomic resolution scenario, potentially including relative increases in the biodiversity index when intuitively decreases would be expected. We recommend being specific about the expected qualitative and quantitative effects of any treatment or natural comparison before formulating a hypothesis regarding biodiversity reductions. Our theoretical study should aid in this endeavour.<b>EDITED BY</b> Isabelle Durance <b>EDITED BY</b> Isabelle Durance
DOI: 10.6084/m9.figshare.4308818.v1
title: Taxonomic resolution and treatment effects – alone and combined – can mask significant biodiversity reductions

description: Taxonomic resolution or uncertainty poses an important problem in biodiversity research. Assessment of biodiversity at the species level is most informative and preferred, but requires effort and expertise. Alternatively, researchers often bin species into higher taxa because they are unable to recognize them, or to save money and time. Here we analyse, by simulation and analytical modelling, the combined effects of dose-dependent mortality and taxonomic binning on biodiversity indices for a fictitious community of organisms. We asked (1) how binning species in a sample into higher taxa significantly affects biodiversity measures, and (2) whether dose-dependent mortality effects, alone or in combination with taxonomic uncertainty, are duly captured by classic biodiversity indices. Our study shows that haphazard binning into various taxonomic levels is legitimate and preferable to orderly binning (all taxa binned at the same level), because it provides the best resolution. We further show that binning will regularly obscure statistical detection of biodiversity differences, if only due to scaling of mean and variance. Also, treatment effects in combination with taxonomic uncertainty can introduce estimation biases of at times complex nonlinear and non-intuitive nature under any taxonomic resolution scenario, potentially including relative increases in the biodiversity index when intuitively decreases would be expected. We recommend being specific about the expected qualitative and quantitative effects of any treatment or natural comparison before formulating a hypothesis regarding biodiversity reductions. Our theoretical study should aid in this endeavour.
DOI: 10.6084/m9.figshare.4308818.v2
title: Taxonomic resolution and treatment effects – alone and combined – can mask significant biodiversity reductions

description: Taxonomic resolution or uncertainty poses an important problem in biodiversity research. Assessment of biodiversity at the species level is most informative and preferred, but requires effort and expertise. Alternatively, researchers often bin species into higher taxa because they are unable to recognize them, or to save money and time. Here we analyse, by simulation and analytical modelling, the combined effects of dose-dependent mortality and taxonomic binning on biodiversity indices for a fictitious community of organisms. We asked (1) how binning species in a sample into higher taxa significantly affects biodiversity measures, and (2) whether dose-dependent mortality effects, alone or in combination with taxonomic uncertainty, are duly captured by classic biodiversity indices. Our study shows that haphazard binning into various taxonomic levels is legitimate and preferable to orderly binning (all taxa binned at the same level), because it provides the best resolution. We further show that binning will regularly obscure statistical detection of biodiversity differences, if only due to scaling of mean and variance. Also, treatment effects in combination with taxonomic uncertainty can introduce estimation biases of at times complex nonlinear and non-intuitive nature under any taxonomic resolution scenario, potentially including relative increases in the biodiversity index when intuitively decreases would be expected. We recommend being specific about the expected qualitative and quantitative effects of any treatment or natural comparison before formulating a hypothesis regarding biodiversity reductions. Our theoretical study should aid in this endeavour.
DOI: 10.6084/m9.figshare.4308818.v4
title: Taxonomic resolution and treatment effects – alone and combined – can mask significant biodiversity reductions

description: Taxonomic resolution or uncertainty poses an important problem in biodiversity research. Assessment of biodiversity at the species level is most informative and preferred, but requires effort and expertise. Alternatively, researchers often bin species into higher taxa because they are unable to recognize them, or to save money and time. Here we analyse, by simulation and analytical modelling, the combined effects of dose-dependent mortality and taxonomic binning on biodiversity indices for a fictitious community of organisms. We asked (1) how binning species in a sample into higher taxa significantly affects biodiversity measures, and (2) whether dose-dependent mortality effects, alone or in combination with taxonomic uncertainty, are duly captured by classic biodiversity indices. Our study shows that haphazard binning into various taxonomic levels is legitimate and preferable to orderly binning (all taxa binned at the same level), because it provides the best resolution. We further show that binning will regularly obscure statistical detection of biodiversity differences, if only due to scaling of mean and variance. Also, treatment effects in combination with taxonomic uncertainty can introduce estimation biases of at times complex nonlinear and non-intuitive nature under any taxonomic resolution scenario, potentially including relative increases in the biodiversity index when intuitively decreases would be expected. We recommend being specific about the expected qualitative and quantitative effects of any treatment or natural comparison before formulating a hypothesis regarding biodiversity reductions. Our theoretical study should aid in this endeavour.<b>EDITED BY</b> Isabelle Durance <b>EDITED BY</b> Isabelle Durance
DOI: 10.6084/m9.figshare.4308716
title: Harmonized Tariff Schedule of the United States

description: Harmonized Tariff Schedule of the United States
DOI: 10.6084/m9.figshare.4308719.v1
title: Bold Signals 3.01: Science and Technology with Brian Nosek

description: Welcome to third season of Bold Signals!<br><b>In this episode:</b><br>1. Scenes from the Replication Crisis: Ronald Fisher and the P-Value. [0:01:00]<br>2. An extended interview with Brian Nosek, Social Psychologist and Director of the Center for Open Science. [0:09:25]<br>3. Bold Signals Documentary Club: Cosmos: A Personal Journey (Episode 1). [0:56:58]<br><b>Music in this Episode:</b><br>"Enterprise 1" by Languis"Trees Don't Sleep" by Zachary Cale, Mighty Moon & Ethan Schmid"Shoegaze" by Jahzzar"Lights Over Tomorrow" by Starover Blue"Not a Song" by Scrapple"Cabalista" by Wild Flag<br><b>Cover Art:</b> "Homebrew" by Robert Tinney
DOI: 10.6084/m9.figshare.4308224
title: pediatric asthma and nephrolithiasis

description: asthma stone data
DOI: 10.6084/m9.figshare.4308221
title: Model DINSAR for Arcgis

description: Model for apply DINSAR to land movement. Model for use in Arcgis
DOI: 10.6084/m9.figshare.4308224.v2
title: pediatric asthma and nephrolithiasis

description: asthma stone data
DOI: 10.6084/m9.figshare.4308221.v2
title: Model DINSAR for Arcgis

description: Model for apply DINSAR to land movement. Model for use in Arcgis
DOI: 10.6084/m9.figshare.4308224.v1
title: peds asthma stoen medication match.jmp

description: asthma stone data
DOI: 10.6084/m9.figshare.4308209
title: Surface Contamination Main Zones

description: The main surface contamination regions on an SUV. Soiling shown in grey; exterior water management (EWM) shown in blue
DOI: 10.6084/m9.figshare.4308215
title: Vehicle Aerodynamics

description: Typical structures seen in the flow around passenger cars.<br>(1) Flow_Diagram_Fig_1.emfFlow over the front end of an SUV illustrated by surface static pressure and flow streamlines coloured by velocity magnitude, from a commercial Lattice Boltzmann based CFD solver (Exa PowerFLOW). Main features include: plenum vortex, a-pillar vortex, wind screen flow and door mirror wake.
DOI: 10.6084/m9.figshare.4308209.v1
title: Surface Contamination Main Zones

description: The main surface contamination regions on an SUV. Soiling shown in grey; exterior water management (EWM) shown in blue
DOI: 10.6084/m9.figshare.4308209.v3
title: Surface Contamination Main Zones

description: The main surface contamination regions on an SUV. Soiling shown in grey; exterior water management (EWM) shown in blue
DOI: 10.6084/m9.figshare.4308209.v2
title: Surface Contamination Main Zones

description: The main surface contamination regions on an SUV. Soiling shown in grey; exterior water management (EWM) shown in blue
DOI: 10.6084/m9.figshare.4308203
title: Addressing reproducibility in single-laboratory phenotyping experiments [Supplementary Materials]

description: There has been a growing concern that preclinical research is failing to replicate experimental results. The problem is especially relevant to phenotyping genetically engineered mouse lines, a central strategy for discovering mammalian gene function and developing animal models of disease. We introduce a statistical method to estimate whether a single-laboratory discovery is likely to replicate in other laboratories, based on previously-estimated variability of genotype × laboratory interaction in large phenotyping databases. Future single-lab experiments can be used to further update the estimation, making the proposed method a true community effort. We validate the method by combining several datasets into the most inclusive analysis conducted to date of across-laboratory replication in mouse phenotyping, and estimate that with current single laboratory analysis 19%–41% of non-replicable phenotypic differences between genotypes are still published as “discoveries”. Applying our proposed method would reduce this rate to 3.3%–9%, close to the intended 0.05, both for testing and confidence intervals. This fileset includes the analysis results, the R and Sweave scripts to reproduce them, the input datasets, output tables with the estimated variances, the phenotypic measures transformations and the paper figure's source data.
DOI: 10.6084/m9.figshare.4308203.v1
title: Addressing reproducibility in single-laboratory phenotyping experiments [Supplementary Materials]

description: There has been a growing concern that preclinical research is failing to replicate experimental results. The problem is especially relevant to phenotyping genetically engineered mouse lines, a central strategy for discovering mammalian gene function and developing animal models of disease. We introduce a statistical method to estimate whether a single-laboratory discovery is likely to replicate in other laboratories, based on previously-estimated variability of genotype × laboratory interaction in large phenotyping databases. Future single-lab experiments can be used to further update the estimation, making the proposed method a true community effort. We validate the method by combining several datasets into the most inclusive analysis conducted to date of across-laboratory replication in mouse phenotyping, and estimate that with current single laboratory analysis 19%–41% of non-replicable phenotypic differences between genotypes are still published as “discoveries”. Applying our proposed method would reduce this rate to 3.3%–9%, close to the intended 0.05, both for testing and confidence intervals. This fileset includes the analysis results, the R and Sweave scripts to reproduce them, the input datasets, output tables with the estimated variances, the phenotypic measures transformations and the paper figure's source data.
DOI: 10.6084/m9.figshare.4308191
title: Kirkegaard2017 - 16S rRNA gene amplicon survey of anaerobic digesters

description: RData file with OTUtables and metadata for a comprehensive survey of anaerobic digesters
DOI: 10.6084/m9.figshare.4308128
title: Mitochondrial genome diversity among six laboratory zebrafish (<i>Danio rerio</i>) strains

description: The mitochondrial genome (mtDNA) is distinct from the nuclear genome and is known to play a significant role in several disease phenotypes, such as longevity and fertility. Here we characterize the complete mitochondrial genomes (∼16 590 bp), and the extent of within and between strain variation for 27 adult zebrafish, representing five commonly used laboratory strains (AB, TL, HL, WIK, and SJD) and one line acquired from a local pet shop. These data were subsequently analyzed to determine the phylogenetic relationships between strains and ascertain if positive selection might be operating on any mtDNA genes. Relationships between strains are not entirely consistent with those observed previously using nuclear DNA. Further there is a substantial body of variation within current zebrafish lines, with 172 variants described across lines. Of these, 27 changes are non-synonymous and there is nominal evidence for positive selection in the mtDNA sequences at some of these sites. We further identify novel frameshift mutations in eight genes, which are all predicted to have functional consequences. Our study provides the first information on mtDNA diversity in zebrafish, identifies multiple non-synonymous substitutions and other mutations expected to have functional effects, and represents an important first step in establishing zebrafish as a model for investigating the phenotypic effects of mtDNA mutations.
DOI: 10.6084/m9.figshare.4308128.v2
title: Mitochondrial genome diversity among six laboratory zebrafish (<i>Danio rerio</i>) strains

description: The mitochondrial genome (mtDNA) is distinct from the nuclear genome and is known to play a significant role in several disease phenotypes, such as longevity and fertility. Here we characterize the complete mitochondrial genomes (∼16 590 bp), and the extent of within and between strain variation for 27 adult zebrafish, representing five commonly used laboratory strains (AB, TL, HL, WIK, and SJD) and one line acquired from a local pet shop. These data were subsequently analyzed to determine the phylogenetic relationships between strains and ascertain if positive selection might be operating on any mtDNA genes. Relationships between strains are not entirely consistent with those observed previously using nuclear DNA. Further there is a substantial body of variation within current zebrafish lines, with 172 variants described across lines. Of these, 27 changes are non-synonymous and there is nominal evidence for positive selection in the mtDNA sequences at some of these sites. We further identify novel frameshift mutations in eight genes, which are all predicted to have functional consequences. Our study provides the first information on mtDNA diversity in zebrafish, identifies multiple non-synonymous substitutions and other mutations expected to have functional effects, and represents an important first step in establishing zebrafish as a model for investigating the phenotypic effects of mtDNA mutations.
DOI: 10.6084/m9.figshare.4308191.v2
title: Kirkegaard2017 - 16S rRNA gene amplicon survey of anaerobic digesters

description: RData file with OTUtables and metadata for a comprehensive survey of anaerobic digesters
DOI: 10.6084/m9.figshare.4308128.v1
title: Mitochondrial genome diversity among six laboratory zebrafish (<i>Danio rerio</i>) strains

description: The mitochondrial genome (mtDNA) is distinct from the nuclear genome and is known to play a significant role in several disease phenotypes, such as longevity and fertility. Here we characterize the complete mitochondrial genomes (∼16 590 bp), and the extent of within and between strain variation for 27 adult zebrafish, representing five commonly used laboratory strains (AB, TL, HL, WIK, and SJD) and one line acquired from a local pet shop. These data were subsequently analyzed to determine the phylogenetic relationships between strains and ascertain if positive selection might be operating on any mtDNA genes. Relationships between strains are not entirely consistent with those observed previously using nuclear DNA. Further there is a substantial body of variation within current zebrafish lines, with 172 variants described across lines. Of these, 27 changes are non-synonymous and there is nominal evidence for positive selection in the mtDNA sequences at some of these sites. We further identify novel frameshift mutations in eight genes, which are all predicted to have functional consequences. Our study provides the first information on mtDNA diversity in zebrafish, identifies multiple non-synonymous substitutions and other mutations expected to have functional effects, and represents an important first step in establishing zebrafish as a model for investigating the phenotypic effects of mtDNA mutations.
DOI: 10.6084/m9.figshare.4308089
title: Time-trace data 1 from Finite-element modelling of elastic wave propagation and scattering within heterogeneous media

description: R(t) and T(t) for N115200 1MHz centre-frequency
DOI: 10.6084/m9.figshare.4308086
title: Time-trace data 2 from Finite-element modelling of elastic wave propagation and scattering within heterogeneous media

description: R(t) and T(t) for N115200 2MHz centre-frequency
DOI: 10.6084/m9.figshare.4308089.v1
title: Time-trace data 1 from Finite-element modelling of elastic wave propagation and scattering within heterogeneous media

description: R(t) and T(t) for N115200 1MHz centre-frequency
DOI: 10.6084/m9.figshare.4308086.v1
title: Time-trace data 2 from Finite-element modelling of elastic wave propagation and scattering within heterogeneous media

description: R(t) and T(t) for N115200 2MHz centre-frequency
DOI: 10.6084/m9.figshare.4308077
title: Time-trace data 3 from Finite-element modelling of elastic wave propagation and scattering within heterogeneous media

description: R(t) and T(t) for N115200 3MHz centre-frequency
DOI: 10.6084/m9.figshare.4308077.v1
title: Time-trace data 3 from Finite-element modelling of elastic wave propagation and scattering within heterogeneous media

description: R(t) and T(t) for N115200 3MHz centre-frequency
DOI: 10.6084/m9.figshare.4307900
title: Biological control of tomato collar rot induced by <i>Sclerotium rolfsii</i> using <i>Trichoderma</i> species isolated in Bangladesh

description: This study evaluated three <i>Trichoderma</i> strains (<i>T. harzianum</i> TR05, <i>T. virens</i> TR06 and <i>T. asperellum</i> TR08) originating from Bangladesh as potential biological control agents against collar rot of tomato under greenhouse conditions. After seed treatment with TR05, a disease incidence of collar rot (5.36%) was lower than for TR06 (34.2%) and TR08 (20.8%). Germination percentage of tomato was highest for TR05 (90.3%). In soil treatment, inoculation with TR08 resulted in the lowest disease incidence (9.78%), and the disease incidence was statistically no different from that for TR05 (16.4%). Thus, TR05 and TR08 have potential as biological control agents of collar rot in tomato.
DOI: 10.6084/m9.figshare.4307900.v1
title: Biological control of tomato collar rot induced by <i>Sclerotium rolfsii</i> using <i>Trichoderma</i> species isolated in Bangladesh

description: This study evaluated three <i>Trichoderma</i> strains (<i>T. harzianum</i> TR05, <i>T. virens</i> TR06 and <i>T. asperellum</i> TR08) originating from Bangladesh as potential biological control agents against collar rot of tomato under greenhouse conditions. After seed treatment with TR05, a disease incidence of collar rot (5.36%) was lower than for TR06 (34.2%) and TR08 (20.8%). Germination percentage of tomato was highest for TR05 (90.3%). In soil treatment, inoculation with TR08 resulted in the lowest disease incidence (9.78%), and the disease incidence was statistically no different from that for TR05 (16.4%). Thus, TR05 and TR08 have potential as biological control agents of collar rot in tomato.
DOI: 10.6084/m9.figshare.4307819
title: Game Teorema Pythagoras(Adrianus Galang Permana Putra)- update ganti game

description: game pythagoras, piperevisi ganti game
DOI: 10.6084/m9.figshare.4307840
title: data.tar

description: This .tar file contains all the data set needed to produce the figures in the paper by Venkataraman and Ray on the Onset of Thermalisation in the Proceedings of the Royal Society.
DOI: 10.6084/m9.figshare.4307840.v1
title: data.tar

description: This .tar file contains all the data set needed to produce the figures in the paper by Venkataraman and Ray on the Onset of Thermalisation in the Proceedings of the Royal Society.