cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10965907
title: List of TEI rolename annotations in the ISicily EpiDoc corpus

description: This CSV file details every instance of a 'roleName' tag in the I.Sicily (sicily.classics.ox.ac.uk) EpiDoc TEI files, reporting the ID number of the file in which it appears, and the value of the @type and @subtype attributes in each case - as such it serves as an index of roleName attestations in the I.Sicily dataset (also recoverable directly from the EpiDoc files). The file will be updated in future.
DOI: 10.5281/zenodo.10965908
title: List of TEI rolename annotations in the ISicily EpiDoc corpus

description: This CSV file details every instance of a 'roleName' tag in the I.Sicily (sicily.classics.ox.ac.uk) EpiDoc TEI files, reporting the ID number of the file in which it appears, and the value of the @type and @subtype attributes in each case - as such it serves as an index of roleName attestations in the I.Sicily dataset (also recoverable directly from the EpiDoc files). The file will be updated in future.
DOI: 10.15468/dl.p5svaa
title: Occurrence Download

description: A dataset containing 1426 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Glycine soja Siebold & Zucc."
 ]
}

 The dataset includes 1426 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044307-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28071005
title: Table S6: Differentially expressed proteins identified in yak milk across comparison groups: HM vs. RM, PM vs. RM, and HHM vs. RM

description: Differentially expressed proteins identified in yak milk across comparison groups: HM vs. RM, PM vs. RM, and HHM vs. RM
DOI: 10.15468/dl.jddzw8
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dicaeoma thunbergiae-alatae (Henn.) Kuntze"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044308-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2g61g6
title: CCDC 2269927: Experimental Crystal Structure Determination

description: Related Article: Jinsa Mary Jacob, Nithya Mohan, Sreejith S. S, M. Sithambaresan, E. Manoj, M. R. Prathapachandra Kurup |2025|J.Mol.Struct.|1319|139463|doi:10.1016/j.molstruc.2024.139463
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g61h7
title: CCDC 2269928: Experimental Crystal Structure Determination

description: Related Article: Jinsa Mary Jacob, Nithya Mohan, Sreejith S. S, M. Sithambaresan, E. Manoj, M. R. Prathapachandra Kurup |2025|J.Mol.Struct.|1319|139463|doi:10.1016/j.molstruc.2024.139463
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.5dhju4
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brassica juncea (L.) Hook.f. & Thomson, 1861"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044309-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3bq4n
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Ormosia hosiei Hemsl. & E.H.Wilson"
 ]
}

 The dataset includes 83 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044310-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfg3vt
title: Occurrence Download

description: A dataset containing 18104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brassica juncea (L.) Czern."
 ]
}

 The dataset includes 18104 records from 583 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044311-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28071008
title: Table S7. GO enrichment analysis for the target genes of differentially expressed proteins in Holstein cow, buffalo, camel, and yak milk.

description: GO enrichment analysis for the target genes of differentially expressed proteins in Holstein cow, buffalo, camel, and yak milk.
DOI: 10.15468/dl.8nrzcn
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brassica juncea (L.) Coss."
 ]
}

 The dataset includes 124 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044312-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48579/pro/grpkzf
title: teste

description: teste
DOI: 10.48579/pro/grpkzf/bubwzl
title: .student.zip_old

description: :unav
DOI: 10.48579/pro/grpkzf/rqbhrd
title: student.zip

description: :unav
DOI: 10.15468/dl.ng7t5v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ascochyta brassicae-junceae Sawada"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044313-241126133413365/datasets/export for details.
DOI: 10.15468/dl.xehpfk
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-38.30955 25.99965,-3.2355 25.99965,-3.2355 46.2556,-38.30955 46.2556,-38.30955 25.99965))",
 "TaxonKey is Oneirodes anisacanthus (Regan, 1925)"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044314-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14194755
title: Synthetic aa-tRNA-seq per-read metrics data for White, Radakovic et al 2024

description: Dwell time and current (trimmean) metrics extracted with Remora for charged and uncharged synthetic tRNA nanopore reads from our November 2024 preprint: Nanopore sequencing of intact aminoacylated tRNAs. These data are used in generating plots in Figure 4, for which the analysis code is available at: github.com/rnabioco/aa-tRNA-seq
DOI: 10.5281/zenodo.14194756
title: Synthetic aa-tRNA-seq per-read metrics data for White, Radakovic et al 2024

description: Dwell time and current (trimmean) metrics extracted with Remora for charged and uncharged synthetic tRNA nanopore reads from our November 2024 preprint: Nanopore sequencing of intact aminoacylated tRNAs. These data are used in generating plots in Figure 4, for which the analysis code is available at: github.com/rnabioco/aa-tRNA-seq
DOI: 10.5281/zenodo.14525322
title: Continuous underway measurements of CO2, CH4, and N2O in a semi-enclosed bay in the Baltic Sea

description: Data set for the manuscript "Hot spots and hot moments in greenhouse gas (CO2, CH4 and N2O) fluxes in a heterogenous coastal ecosystem". 

Data included in file "Data_file_spatiotemporal.xlsx" is sea surface temperature, salinity and patricaial preassure of CH4, CO2  N2O from atmosphere and sea surface. It also includes calculated fluxes of CH4, CO2, N2O and CO2 eqvivalents of CH4 and N2O. Additionally it includes windspeed and GPS data. 

Data included in file"Data_file_data_per_pixel" is interpolated data of concnetrations and fluxes of CO2, CH4 and N2O as well as temperature and CO2 eqvivalnets of CH4 and N2O.
DOI: 10.5281/zenodo.14525321
title: Continuous underway measurements of CO2, CH4, and N2O in a semi-enclosed bay in the Baltic Sea

description: Data set for the manuscript "Hot spots and hot moments in greenhouse gas (CO2, CH4 and N2O) fluxes in a heterogenous coastal ecosystem". 

Data included in file "Data_file_spatiotemporal.xlsx" is sea surface temperature, salinity and patricaial preassure of CH4, CO2  N2O from atmosphere and sea surface. It also includes calculated fluxes of CH4, CO2, N2O and CO2 eqvivalents of CH4 and N2O. Additionally it includes windspeed and GPS data. 

Data included in file"Data_file_data_per_pixel" is interpolated data of concnetrations and fluxes of CO2, CH4 and N2O as well as temperature and CO2 eqvivalnets of CH4 and N2O.
DOI: 10.5281/zenodo.14536043
title: Continuous underway measurements of CO2, CH4, and N2O in a semi-enclosed bay in the Baltic Sea

description: Data set for the manuscript "Hot spots and hot moments in greenhouse gas (CO2, CH4 and N2O) fluxes in a heterogenous coastal ecosystem". 

Data included in file "Data_file_spatiotemporal.xlsx" is sea surface temperature, salinity and patricaial preassure of CH4, CO2  N2O from atmosphere and sea surface. It also includes calculated fluxes of CH4, CO2, N2O and CO2 eqvivalents of CH4 and N2O. Additionally it includes windspeed and GPS data. 

Data included in file"Data_file_data_per_pixel" is interpolated data of concnetrations and fluxes of CO2, CH4 and N2O as well as temperature and CO2 eqvivalnets of CH4 and N2O.
DOI: 10.6084/m9.figshare.28070948
title: Metadata for "Speech perception triggers language network plasticity by hub reconstruction in children with cochlear implant"

description: This dataset comprises fNIRS blood oxygenation data collected from two groups of children (children with cochlear implants and control group with normal hearing) during auditory perception tasks. The auditory stimuli include speech sentences, pure tones, and animal sounds.
DOI: 10.6084/m9.figshare.28070948.v1
title: Metadata for "Speech perception triggers language network plasticity by hub reconstruction in children with cochlear implant"

description: This dataset comprises fNIRS blood oxygenation data collected from two groups of children (children with cochlear implants and control group with normal hearing) during auditory perception tasks. The auditory stimuli include speech sentences, pure tones, and animal sounds.
DOI: 10.6084/m9.figshare.26265050.v5
title: Late-Copernican smooth deposits sampled by Chang’E-6

description: Data generated in this work, including the high-resolution digital elevation model, entrope map, phase ratio map, and shape files for boundaries of smooth deposits, regions used to extract reflectance spectra, phase ratio, radar and thermophysical properties, and crater statistics areas and collected craters.
DOI: 10.5522/04/27084082
title: An eDNA toolkit for the surveillance of wildlife pathogens in traded amphibians: Raw Data and Code

description: Raw data and code associated with the PhD thesis: An eDNA toolkit for the surveillance of wildlife pathogens in traded amphibians, submitted September 2024.Amphibians are threatened globally, with dramatic declines reported in many species attributed to the deadly pathogens Batrachochytrium dendrobatidis (<i>Bd</i>) and Ranavirus (<i>Rv</i>). Both pathogens have spread through international wildlife trade networks, which remain largely unmonitored, presenting major conservation and welfare challenges despite legal obligations to do so. Environmental (e)DNA methods can provide highly sensitive non-invasive pathogen surveillance for both traded and wild amphibians. To investigate the relationship between eDNA detection and environmental pathogen persistence, pathogen eDNA decay rates were quantified across a range of temperatures (15-25ºC), finding that eDNA decay is rapid for both pathogens. Low levels of pathogen eDNA remained detectable for the duration of the experiment (&gt;28 days). I consider high concentrations of eDNA to represent viable pathogen in the environment, sustained due to active shedding from infected individuals. This demonstrates the usefulness of eDNA for the monitoring immediate population-level infection status. I used eDNA methods to identify <i>Bd</i> infections in a large <i>Xenopus</i>research facility (EXRC, Portsmouth, UK) by sampling animals opportunistically in line with 3Rs guidelines. Having identified <i>Bd</i> infections in a subpopulation of <i>Xenopus laevis</i>, I compared detection from 4 types of eDNA and swab data for ~60 animals over 10 days. Positive Bd eDNA signals were consistently detected in tank-water, whereas detection appears more variable from other eDNA sources (i.e. sump/sludge/sock), and swab positives cycled between positive and negative for most individuals. I then used compartmental mathematical disease models to investigate the relationships between environmental detection, prevalence and individual loads. My findings are put into context of captive management, pathogen surveillance of traded amphibians and general animal welfare. Ultimately, an improved knowledge of both the potential and limitations of pathogen eDNA can be transferred to other challenging disease systems for improved pathogen monitoring and safeguarding of amphibian populations worldwide.
DOI: 10.5522/04/27084082.v2
title: An eDNA toolkit for the surveillance of wildlife pathogens in traded amphibians: Raw Data and Code

description: Raw data and code associated with the PhD thesis: An eDNA toolkit for the surveillance of wildlife pathogens in traded amphibians, submitted September 2024.Amphibians are threatened globally, with dramatic declines reported in many species attributed to the deadly pathogens Batrachochytrium dendrobatidis (<i>Bd</i>) and Ranavirus (<i>Rv</i>). Both pathogens have spread through international wildlife trade networks, which remain largely unmonitored, presenting major conservation and welfare challenges despite legal obligations to do so. Environmental (e)DNA methods can provide highly sensitive non-invasive pathogen surveillance for both traded and wild amphibians. To investigate the relationship between eDNA detection and environmental pathogen persistence, pathogen eDNA decay rates were quantified across a range of temperatures (15-25ºC), finding that eDNA decay is rapid for both pathogens. Low levels of pathogen eDNA remained detectable for the duration of the experiment (&gt;28 days). I consider high concentrations of eDNA to represent viable pathogen in the environment, sustained due to active shedding from infected individuals. This demonstrates the usefulness of eDNA for the monitoring immediate population-level infection status. I used eDNA methods to identify <i>Bd</i> infections in a large <i>Xenopus</i>research facility (EXRC, Portsmouth, UK) by sampling animals opportunistically in line with 3Rs guidelines. Having identified <i>Bd</i> infections in a subpopulation of <i>Xenopus laevis</i>, I compared detection from 4 types of eDNA and swab data for ~60 animals over 10 days. Positive Bd eDNA signals were consistently detected in tank-water, whereas detection appears more variable from other eDNA sources (i.e. sump/sludge/sock), and swab positives cycled between positive and negative for most individuals. I then used compartmental mathematical disease models to investigate the relationships between environmental detection, prevalence and individual loads. My findings are put into context of captive management, pathogen surveillance of traded amphibians and general animal welfare. Ultimately, an improved knowledge of both the potential and limitations of pathogen eDNA can be transferred to other challenging disease systems for improved pathogen monitoring and safeguarding of amphibian populations worldwide.
DOI: 10.5522/04/27084082.v1
title: An eDNA toolkit for the surveillance of wildlife pathogens in traded amphibians: Raw Data and Code

description: Raw data and code associated with the PhD thesis: An eDNA toolkit for the surveillance of wildlife pathogens in traded amphibians, submitted September 2024.Amphibians are threatened globally, with dramatic declines reported in many species attributed to the deadly pathogens Batrachochytrium dendrobatidis (<i>Bd</i>) and Ranavirus (<i>Rv</i>). Both pathogens have spread through international wildlife trade networks, which remain largely unmonitored, presenting major conservation and welfare challenges despite legal obligations to do so. Environmental (e)DNA methods can provide highly sensitive non-invasive pathogen surveillance for both traded and wild amphibians. To investigate the relationship between eDNA detection and environmental pathogen persistence, pathogen eDNA decay rates were quantified across a range of temperatures (15-25ºC), finding that eDNA decay is rapid for both pathogens. Low levels of pathogen eDNA remained detectable for the duration of the experiment (&gt;28 days). I consider high concentrations of eDNA to represent viable pathogen in the environment, sustained due to active shedding from infected individuals. This demonstrates the usefulness of eDNA for the monitoring immediate population-level infection status. I used eDNA methods to identify <i>Bd</i> infections in a large <i>Xenopus</i>research facility (EXRC, Portsmouth, UK) by sampling animals opportunistically in line with 3Rs guidelines. Having identified <i>Bd</i> infections in a subpopulation of <i>Xenopus laevis</i>, I compared detection from 4 types of eDNA and swab data for ~60 animals over 10 days. Positive Bd eDNA signals were consistently detected in tank-water, whereas detection appears more variable from other eDNA sources (i.e. sump/sludge/sock), and swab positives cycled between positive and negative for most individuals. I then used compartmental mathematical disease models to investigate the relationships between environmental detection, prevalence and individual loads. My findings are put into context of captive management, pathogen surveillance of traded amphibians and general animal welfare. Ultimately, an improved knowledge of both the potential and limitations of pathogen eDNA can be transferred to other challenging disease systems for improved pathogen monitoring and safeguarding of amphibian populations worldwide.
DOI: 10.15468/dl.pw3dtm
title: Occurrence Download

description: A dataset containing 521 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Davidia involucrata Baill."
 ]
}

 The dataset includes 521 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044317-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wj6vby
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "TaxonKey is Aonyx capensis (Schinz, 1821)"
 ]
}

 The dataset includes 24 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044316-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bc2bzd
title: Occurrence Download

description: A dataset containing 248174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Prinia subflava (Gmelin, 1789))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 248174 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044315-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7khz9t
title: Occurrence Download

description: A dataset containing 2200032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Geometry POLYGON((-53.59416 -15.61225,-36.86535 -15.61225,-36.86535 0.30011,-53.59416 0.30011,-53.59416 -15.61225))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 2200032 records from 895 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044304-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive142104.20241212.9.2
title: Campylobacter jejuni

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive142104.20251217.10
title: Campylobacter jejuni

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0130366.10fu
title: SH0130366.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive142105.20241212.9.2
title: Campylobacter jejuni

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive142105.20251217.10
title: Campylobacter jejuni

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.