cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3631175_d10
title: Additional file 8: Table S5. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: Distribution and expression patterns of key enzymes involved in lipid metabolism. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3631175_d8
title: Additional file 13: Table S9. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: The designed primers of the key enzymes involved in lipid metabolism for qRT-PCR. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3631175_d7
title: Additional file 6: Table S4. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: Distribution of unigenes assigned into KEGG public database. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3631175_d5
title: Additional file 10: Table S6. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: FPKM comparison of up and down regulated unigenes by DEGs. (XLS 5071 kb)
DOI: 10.6084/m9.figshare.c.3631175_d6
title: Additional file 4: Table S2. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: Distribution of unigenes assigned into GO public database. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3631175_d4
title: Additional file 5: Table S3. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: Distribution of unigenes assigned into COG public database. (XLS 21 kb)
DOI: 10.6084/m9.figshare.c.3631175_d1
title: Additional file 3: Table S1. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: The distribution of sequencing reads in each library. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3630473_d1
title: Additional file 1: of Classification and characterization of class III malocclusion in Chinese individuals

description: Cephalometric Analysis. This file contains general data (number, age and gender) and the 61 cephalometric parameters of 144 subjects. (XLSX 103 kb)
DOI: 10.6084/m9.figshare.c.3630407_d2
title: Additional file 2: of Endothelial lipase genetic polymorphisms and the lipid-lowering response in patients with coronary artery disease on rosuvastatin

description: Raw data. (XLS 47 kb)
DOI: 10.6084/m9.figshare.c.3630386_d3
title: Additional file 1: of Novel compound heterozygous mutations in CNGA1in a Chinese family affected with autosomal recessive retinitis pigmentosa by targeted sequencing

description: Gene symbol list that include in the Hereditary Ophthalmological Disease GenePanel. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3630386_d2
title: Additional file 2: of Novel compound heterozygous mutations in CNGA1in a Chinese family affected with autosomal recessive retinitis pigmentosa by targeted sequencing

description: The status of nine mutations in eight family members which are ruled out from pathogenic mutations. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3630110_d1
title: Additional file 1: of The stepwise evolution of the exome during acquisition of docetaxel resistance in breast cancer cells

description: Sheet 1: Summery of acquired genomic alterations being selected for during docetaxel exposure in the MCF-7 sub-lines. Sheet 2: Details on the acquired genomic alterations being selected for during docetaxel exposure in the MCF-7 sub-lines. Positions are annotated with Ensembl VEP (version 2.8). The stage (sub-line) in which the alteration was acquired is given along with assigned variant class. Sheet 3: Same as sheet 2, but showing only Class A variation. Sheet 4: Same as sheet 3, but showing only the ‘most severe’ variant per gene. Sheet 5: Summery of acquired genomic alterations being selected for during docetaxel exposure in the MDA-MB-231 sub-lines. Sheet 6: Details on the acquired genomic alterations being selected for during docetaxel exposure in the MDA-MB-231 sub-lines. Positions are annotated with Ensembl VEP (version 2.8). The stage (sub-line) in which the alteration was acquired is given along with assigned variant class. Sheet 7: Same as sheet 6, but showing only Class A variation. Sheet 8: Same as sheet 7, but showing only the ‘most severe’ variant per gene. (XLSX 1113 kb)
DOI: 10.6084/m9.figshare.c.3630044_d10
title: Additional file 2: Tabel S2. of B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.)

description: The correlation of RNA-seq data in each of the three groups. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3630044_d9
title: Additional file 14: Table S4. of B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.)

description: BLAST results of seven B-located gene fragments. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3630044_d7
title: Additional file 1: Table S1. of B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.)

description: Summary of RNA-seq read mapping results. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3630044_d8
title: Additional file 8: of B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.)

description: A list of B-located gene fragments, four long length genes and three LTRs. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3630044_d5
title: Additional file 16: of B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.)

description: Primers used in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3630077_d2
title: Additional file 1: Table S1. of Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis

description: Information on Map strains included in this study (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3630044_d1
title: Additional file 11: of B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.)

description: Data Set S2. Allele specific analysis of B-derived transcripts in B73â  +â  1B RNA-seq libraries. (XLS 1762 kb)
DOI: 10.6084/m9.figshare.c.3629969_d14
title: MOESM11 of Epigenetic dynamics of monocyte-to-macrophage differentiation

description: Additional file 11: Table S5. Overview over the donors and sample nomenclature used in the analyses presented in the manuscript.
DOI: 10.6084/m9.figshare.c.3630008_d1
title: Additional file 3: Table S2. of ARN: analysis and prediction by adipogenic professional database

description: All of the throughput articles’ PMID in ARN database. (XLSX 511 kb)
DOI: 10.6084/m9.figshare.c.3629969_d10
title: MOESM8 of Epigenetic dynamics of monocyte-to-macrophage differentiation

description: Additional file 8: Table S4. (Tab 1) Gene Ontology analysis of genes that are associated with DMRs. (Tab 2) DMR associated genes that belong to an identified GO category and that were used for the GREAT analysis.
DOI: 10.6084/m9.figshare.c.3629615_d8
title: Additional file 4: of Gene expression profiling in necrotizing enterocolitis reveals pathways common to those reported in Crohn’s disease

description: List of canonical pathways modulated in CD. (XLS 66 kb)
DOI: 10.6084/m9.figshare.c.3629615_d7
title: Additional file 3: of Gene expression profiling in necrotizing enterocolitis reveals pathways common to those reported in Crohn’s disease

description: List of canonical pathways modulated in NEC. (XLS 46 kb)
DOI: 10.6084/m9.figshare.c.3629615_d5
title: Additional file 8: of Gene expression profiling in necrotizing enterocolitis reveals pathways common to those reported in Crohn’s disease

description: List of differentially expressed genes in NEC and pedCD. (XLS 68 kb)
DOI: 10.6084/m9.figshare.c.3629615_d6
title: Additional file 6: of Gene expression profiling in necrotizing enterocolitis reveals pathways common to those reported in Crohn’s disease

description: List of differentially expressed genes in NEC and CD. (XLS 68 kb)
DOI: 10.6084/m9.figshare.c.3629615_d3
title: Additional file 2: of Gene expression profiling in necrotizing enterocolitis reveals pathways common to those reported in Crohn’s disease

description: List of differentially expressed genes in NEC. (XLS 137 kb)
DOI: 10.6084/m9.figshare.c.3629615_d4
title: Additional file 1: of Gene expression profiling in necrotizing enterocolitis reveals pathways common to those reported in Crohn’s disease

description: Primers used for qPCR in this study. (XLS 48 kb)
DOI: 10.6084/m9.figshare.c.3629615_d2
title: Additional file 5: of Gene expression profiling in necrotizing enterocolitis reveals pathways common to those reported in Crohn’s disease

description: List of canonical pathways modulated in NEC and CD. (XLS 50 kb)
DOI: 10.6084/m9.figshare.c.3629615_d1
title: Additional file 7: of Gene expression profiling in necrotizing enterocolitis reveals pathways common to those reported in Crohn’s disease

description: List of canonical pathways modulated in pedCD. (XLS 68 kb)
DOI: 10.6084/m9.figshare.c.3629537_d13
title: Additional file 8: Table S6. of Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses

description: RcSP homologs (gene IDs). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3629537_d11
title: Additional file 2: Table S1. of Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses

description: SNPs in organism pairs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3629537_d10
title: Additional file 7: Table S5. of Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses

description: Secondary metabolism gene clusters. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3629573_d1
title: Additional file 1: Table S1. of 
                     Anaplasma phagocytophilum in sheep and goats in central and southeastern China

description: GroEL gene sequences of A. phagocytophilum isolates analysed in this study. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3629537_d9
title: Additional file 3: Table S2. of Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses

description: (A) Core meiotic recombination machinery genes. (B) Genes involved in sexual reproduction in the aspergilli. (XLSX 43 kb)
DOI: 10.6073/pasta/3b2443d05c250a4ea144d9028e6d4fa3
title: Precipitation from the Shark River Slough, Everglades National Park (FCE LTER), South Florida, USA, November 2000 - ongoing

description: Rain level is recorded at least every thirty minutes at the sites SRS 1d, SRS 2 & SRS 3. Not active sites are: SRS 1a and SRS 1c. Rain level data is collected using a tipping bucket rain gauge (SUTRON 5600-0425) attached to ISCO autosamplers, which also act as dataloggers. We condense these data into daily cumulative rainfall, although hourly rain level data are also available.
 
 Related precipitation data packages: 
 
 Precipitation from the Taylor Slough (https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-fce&identifier=1097).
DOI: 10.6084/m9.figshare.c.3629159_d4
title: Additional file 5: Table S2. of Complete depletion of primordial germ cells in an All-female fish leads to Sex-biased gene expression alteration and sterile All-male occurrence

description: DEGs between germ cell-depleted gynogenetic gonads and WT gynogenetic gonads at 25, 35, 45 and 60 dph, respectively. (XLSX 5697Â kb)
DOI: 10.6084/m9.figshare.c.3629135_d12
title: MOESM4 of Metagenomic and metaproteomic analyses of a corn stover-adapted microbial consortium EMSD5 reveal its taxonomic and enzymatic basis for degrading lignocellulose

description: Additional file 4: Table S2. Table S2.xlsx. Distribution of CAZy family proteins in the metagenome of EMSD5. CAZy family of predicted proteins was analyzed with dbCAN.
DOI: 10.6084/m9.figshare.c.3629168_d1
title: Additional file 1: of Application of a novel rectal cooling device in hypothermia therapy after cerebral hypoxia-ischemia in rats

description: Detail about rectal temperature in Rectal and Blanket cooling group. (XLS 28 kb)
DOI: 10.6084/m9.figshare.c.3629135_d7
title: MOESM6 of Metagenomic and metaproteomic analyses of a corn stover-adapted microbial consortium EMSD5 reveal its taxonomic and enzymatic basis for degrading lignocellulose

description: Additional file 6: Table S3. Table S3.xlsx. Proteins identified in the culture supernatants of corn stover-, xylan- and xylose-containing medium on day 5, respectively.
DOI: 10.6084/m9.figshare.c.3629135_d4
title: MOESM9 of Metagenomic and metaproteomic analyses of a corn stover-adapted microbial consortium EMSD5 reveal its taxonomic and enzymatic basis for degrading lignocellulose

description: Additional file 9: Table S5. Table S5.xlsx. Abundance profiles of all identified proteins across three time points on corn stover.
DOI: 10.6084/m9.figshare.c.3628727_d1
title: Additional file 1: Figure S1. of 
                     Haynaldia villosa NAM-V1 is linked with the powdery mildew resistance gene Pm21 and contributes to increasing grain protein content in wheat

description: Multiple alignments of deduced amino acid sequences of the NAM proteins. (RTF 117Â kb)
DOI: 10.6084/m9.figshare.c.3628682_d11
title: Additional file 8: of Numerous genetic loci identified for drought tolerance in the maize nested association mapping populations

description: Significantly associated SNPs at the threshold of BPPâ  =â  0.05 for all of the traits under the WW and WS conditions in the CN-NAM population. (XLSX 126Â kb)
DOI: 10.6084/m9.figshare.c.3628682_d10
title: Additional file 9: of Numerous genetic loci identified for drought tolerance in the maize nested association mapping populations

description: Significantly associated SNPs at the threshold of BPPâ  =â  0.05 for all of the traits under the WW and WS conditions in the US-NAM population. (XLSX 83Â kb)
DOI: 10.6084/m9.figshare.c.3628682_d9
title: Additional file 10: of Numerous genetic loci identified for drought tolerance in the maize nested association mapping populations

description: All of the robust SNPs associated with the seven drought-related traits and the closest candidate genes in the two NAM populations. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3628682_d8
title: Additional file 5: of Numerous genetic loci identified for drought tolerance in the maize nested association mapping populations

description: Joint linkage analysis summary for the seven drought-related traits under the WW and WS conditions in the CN-NAM population. (XLSX 65Â kb)
DOI: 10.6084/m9.figshare.c.3628682_d5
title: Additional file 11: of Numerous genetic loci identified for drought tolerance in the maize nested association mapping populations

description: Comparison between the QTL results identified for the seven drought-related traits under WS in both NAM populations and the reported mQTLs associated with drought tolerance. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3628229_d2
title: MOESM2 of Genome-wide identification and evaluation of constitutive promoters in streptomycetes

description: Additional file 2: Dataset S1. Genes with constant transcript levels in five time-series microarray datasets and their intersection.
DOI: 10.6084/m9.figshare.c.3628226_d2
title: Additional file 1: of Transcriptome analysis and identification of genes associated with ω-3 fatty acid biosynthesis in Perilla frutescens (L.) var. frutescens

description: Table S1. Fatty acid composition of perilla developing seeds and leaves. All data are averages of three measurements ± SE. Table S2. Statistical summary of de novo transcriptome assembly and annotation. Table S3. Annotation of 54,079 perilla representative transcripts and their expression in developing seeds and leaf. Transcripts represents as Locus. Raw read count and normalized read count were represented as expression level for each developing seeds and leaves samples. Table S4. Nucleotide sequences of 54,079 perilla representative transcripts in FASTA format. Table S5. Gene ontology analysis of DEG cluster 3, 4, 5 and 10 transcripts of perilla. Table S6. List of gene products for the top 50 DEGs in Cluster 3, 4, 5 and 10. Table S7. Number of identified genes involved in acyl-lipid metabolism of perilla transcriptome. Table S8. List of expressed genes involved in fatty acid and TAG biosynthesis in perilla. Table S9. Information of perilla gene primers (5′ → 3′) used in the qPCR analysis and cDNA cloning. (ZIP 27440 kb)
DOI: 10.6084/m9.figshare.c.3628229_d1
title: MOESM3 of Genome-wide identification and evaluation of constitutive promoters in streptomycetes

description: Additional file 3: Dataset S2. Genes eliminated in each rational selection step.
DOI: 10.6084/m9.figshare.c.3628205_d1
title: Additional file 1: Table S1. of GPCR and IR genes in Schistosoma mansoni miracidia

description: TMHMM, Phobius and HMMer search results during the identification of putative GPCRs within the S. mansoni genome. (XLSX 98 kb)
DOI: 10.6084/m9.figshare.c.3628205_d2
title: Additional file 2: Table S2. of GPCR and IR genes in Schistosoma mansoni miracidia

description: Sequences used for phylogenetic analysis in Fig.Â 4a. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3628160_d1
title: Additional file 1: of Population dynamics and community structure of Anopheles mosquitoes along the China-Myanmar border

description: GPS readings of all surveyed houses. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3627848_d3
title: Additional file 2: Table S2. of Pro-inflammatory miR-223 mediates the cross-talk between the IL23 pathway and the intestinal barrier in inflammatory bowel disease

description: Genes that showed greater than four-fold downregulation in IBD. (XLSX 14 kb)
DOI: 10.15468/dl.fb72v6
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CollectionKey is 5aee131f-91dd-4b78-bfee-296f86801b7f",
 "Geometry POLYGON((-118.36512 49.00494,-118.45189 49.46548,-120.24063 49.41876,-120.24063 48.99159,-118.36512 49.00494))"
 ]
}

 The dataset includes 177 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032624-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3627176_d2
title: Additional file 2: of Transcriptome analysis of root response to citrus blight based on the newly assembled Swingle citrumelo draft genome

description: All the DEGs identified by cuffdiff2 when cutoff |FC| &gt; =2, FDR  =1 was applied. (XLSX 270 kb)
DOI: 10.6084/m9.figshare.c.3626690_d13
title: Additional file 16: Table S11. of Developmental piRNA profiles of the invasive vector mosquito Aedes albopictus

description: Candidates of upregulated piRNAs in blood-fed adult female. (XLS 209 kb)
DOI: 10.6084/m9.figshare.c.3626690_d12
title: Additional file 15: Table S10. of Developmental piRNA profiles of the invasive vector mosquito Aedes albopictus

description: Sex-bias piRNA loci in the genome. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3626690_d9
title: Additional file 5: Table S3. of Developmental piRNA profiles of the invasive vector mosquito Aedes albopictus

description: List of repeat-derived piRNAs. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3626690_d6
title: Additional file 1: Table S1. of Developmental piRNA profiles of the invasive vector mosquito Aedes albopictus

description: Small RNA sequence statistics for the six developmental stage libraries of Aedes albopictus. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3626690_d4
title: Additional file 10: Table S6. of Developmental piRNA profiles of the invasive vector mosquito Aedes albopictus

description: The cluster distribution of piRNAs in the Aedes albopictus genome. (XLS 268 kb)
DOI: 10.6084/m9.figshare.c.3626690_d5
title: Additional file 2: Table S2. of Developmental piRNA profiles of the invasive vector mosquito Aedes albopictus

description: Small RNA sequence statistics for 24â  30 nt reads matched to the Aedes albopictus genome assembly. (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3626690_d1
title: Additional file 17: Table S12. of Developmental piRNA profiles of the invasive vector mosquito Aedes albopictus

description: Upregulated piRNAs loci of blood-fed adult female in the genome. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3626690_d2
title: Additional file 14: Table S9. of Developmental piRNA profiles of the invasive vector mosquito Aedes albopictus

description: Candidates of sex-bias expression piRNAs. (XLS 207 kb)
DOI: 10.6084/m9.figshare.c.3626255_d1
title: Additional file 1: of Macrophage migration inhibitory factor - a therapeutic target in gallbladder cancer

description: Properties of GBC cell lines used in the study. (XLS 27 kb)
DOI: 10.6084/m9.figshare.c.3626249_d1
title: Additional file 1: Table S1. of Twenty-six circulating antigens and two novel diagnostic candidate molecules identified in the serum of canines with experimental acute toxoplasmosis

description: List of CAg proteins identified by LC-MS/MS after IP enrichment and purification with ESA antibodies. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3626183_d5
title: Additional file 3: Table S2. of A genome-wide expression profile analysis reveals active genes and pathways coping with phosphate starvation in soybean

description: The list of DEGs between different P treatments in the roots and leaves of CD and YH. (XLS 55 kb)
DOI: 10.6084/m9.figshare.c.3626183_d1
title: Additional file 2: Table S1. of A genome-wide expression profile analysis reveals active genes and pathways coping with phosphate starvation in soybean

description: KEGG and Go enrichment analysis of differently expressed genes. (a) 317 DEGs between different P treatments (b) 195 DEGs between different materials (c) 253 DEGs between different tissues (d) 85 overlapping genes between the 195 marked DEGs between CD and YH and 317 DEGs in roots and leaves (e) 68 overlapping genes between the 253 marked DEGs between roots and leaves and 317 DEGs in roots and leaves (f) 42 common DEGs. (XLS 86 kb)
DOI: 10.6084/m9.figshare.c.3625646_d6
title: Additional file 6: of Genome-wide association analysis of forage quality in maize mature stalk

description: Summary of the SNPs significantly associated with IVDMD. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3625646_d3
title: Additional file 5: of Genome-wide association analysis of forage quality in maize mature stalk

description: Summary of the SNPs significantly associated with NDF. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3625646_d2
title: Additional file 4: of Genome-wide association analysis of forage quality in maize mature stalk

description: Summary of the SNPs significantly associated with ADF. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3625637_d2
title: Additional file 4: of Systems biology evaluation of cell-free amniotic fluid transcriptome of term and preterm infants to detect fetal maturity

description: Alternative exons in amniotic fluid detected through a reciprocal junction analysis of percent spliced in values from AltAnalyze between late preterm infants that required respiratory distress or gavage feeding compared to full term infants. (XLSX 10303 kb)
DOI: 10.6084/m9.figshare.c.3625646_d1
title: Additional file 2: of Genome-wide association analysis of forage quality in maize mature stalk

description: Summary of leading SNPs and candidate genes significantly associated with forage quality traits. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3625637_d1
title: Additional file 3: of Systems biology evaluation of cell-free amniotic fluid transcriptome of term and preterm infants to detect fetal maturity

description: Alternative exons detected through a reciprocal junction analysis of percent spliced in values from AltAnalyze among a panel of adult tissues and placenta by RNA-Seq. (XLSX 110 kb)
DOI: 10.6084/m9.figshare.c.3625586_d10
title: Additional file 10: of Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil

description: Pearson correlation of the libraries in ( A ) safflower and ( B ) linseed oil treatments. (XLSX 58 kb)