cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14455/nrct.fas.2016.231
title: เมืองอุตสาหกรรมเชิงนิเวศ (Eco-Industrial Town)
DOI: 10.14455/nrct.fas.2016.234
title: พฤติกรรมการเข้าใช้บริการร้านกาแฟ Fresh Bluemountain coffee
DOI: 10.14455/nrct.fas.2016.235
title: เทคโนโลยีภูมิสารสนเทศเพื่อการท่องเที่ยวเชิงอนุรักษ์บ้านแม่กลางหลวงโมเดล
DOI: 10.14455/nrct.fas.2016.236
title: ใช้สมาร์ตโฟนอย่างไรให้ดีต่อสุขภาพ
DOI: 10.17632/52zvv69d3x.1
title: Figure S1G -RelA-RNA complexes used for CRAC isolated before (-) and after (+) isoleucine starvation
DOI: 10.17632/8pf79gx3vk.1
title: Figure S1F - Western blot analysis of RelA protein levels before and after starvation
DOI: 10.17632/d3fp4wsmx3.2
title: ATI and CTI

description: The paper
DOI: 10.17632/k6rjzf5y36.4
title: Data and algorithms for the project of sterilized intervention effectiveness evaluation on Russian data 2014-2017

description: This project presents tests for sterilized intervention effectiveness evaluation for small open commodity exporting economy. It corresponds to submission of the paper: "Sterilized interventions in the form of FX repo auctions: VECM analysis of Russian case" prepared for Russian Journal of Money and Finance in April, 2018. Three Vector error correction models are estimated and analyzed (VECM1, VECM2, VECM3). Used in the estimation time series include 618 daily observations from 6 November 2014 to 20 April 2017. The oil price is the price of the OPEC basket in US dollars per barrel. The exchange rate is the average spot rate (with delivery TODAY) on the Moscow Exchange (MOEX) measured in Russian rubles per one US dollar. Both oil price and exchange rate are introduced in the models in natural logarithm to measure short term and long term elasticity of exchange rate with respect to oil price. The policy interest rate is the BoR key interest rate in percent. I introduce the cumulated sterilized interventions variable as total claims of BoR to commercial banks in USD, created by foreign currency repo auctions . Sterilized intervention variable is the volume of US dollars distributed through the repo auction at day t minus the volume of US dollars paid by commercial banks to the BoR at day t. Data are contained in: All graphs for RJMF reestimated2.xls for Excel VECM_reestimated2.jsc for JMulti JM_data_VECM1_reest2.mat JM_data_VECM2_reest2.mat JM_data_VECM13_reest2.mat for Matlab.
DOI: 10.17632/m387mg2t9c.1
title: Original data for Eleuteri et al, Cell Reports 2018 (CELL-REPORTS-D-17-02245R2)

description: The folder contains the original WBs and the Mass Spectometry Raw data pubblished in Eleuteri et al.; Cell Reports, 2018. Descriptions and technical explanations are reported in the paper.
DOI: 10.17632/nmgz3m3ptn.1
title: RNA sequencing of Stentor cell fragments reveals transcriptional changes during cellular regeneration - Supplementary data

description: Data_S1.xlsx: Orthologous groups assigned to biological processes. Related to Figure 3. Orthologous group assignment to all the proteins in each of the three biological processes enriched in all conditions (Microtubule-based movement, Protein phosphorylation, Cellular protein modification). Data_S2.xlsx: topGO output showing enriched processes in each condition. Related to Figure 3. Data_S3.xlsx: Orthologous groups involved in cell cycle. Related to Figure 3. Overview of orthologous groups which upregulated proteins in S. polymorphus were assigned to that have orthologs involved in cell cycle regulation.
DOI: 10.17632/tdpr627rny.1
title: Figure S1E - Thin-layer chromatograms of (p)ppGpp induction in MG1655 and MG1655relA::HTF in response to Isoleucine starvation.
DOI: 10.17632/vv3pvnb75h.1
title: Figure 1D - tRNA acylation levels of exponentially growing MG1655 and MG1655relA::HTF measured by Northern blotting analysis
DOI: 10.17632/z9zbzwtw3r.2
title: Data for: Factors associated with Influenza vaccination failure and severe disease in a French region in 2015

description: Current influenza vaccination strategy is based on limited analyses of circulating strains and has some drawbacks, as illustrated during the 2014-2015 season with the circulation of A(H3N2) viruses belonging to divergent genetic subgroups. We reasoned that these strains, poorly neutralized in vitro, may have been associated with vaccination failure and more severe diseases. We conducted a study on a continuous series of 249 confirmed influenza infections. Incidence was three fold greater than in the previous three years. Most isolates were A(H3N2) viruses (78%) and clustered in subgroups 3C.2a (57%) and 3C.3b (43%). We identified 23 non-synonymous mutations that had already been identified during previous seasons at low frequencies, except mutation Q197H, present in 26% of 3C.3b isolates. We identified lung disorder, tobacco smoking and A(H1N1)pdm09 infection as risk factor of severe influenza disease. In contrast, young age (&lt; 5 years), A(H3N2) infection and initial admission to an emergency department were associated with a better outcome of influenza infection.
DOI: 10.17632/7xjcbsmzzc.1
title: Long-term results using gelatin microfistulae (XEN) implantation in glaucoma surgery.

description: Used in paper describing 6 year results in gelatin (XEN) microfistula outcomes
DOI: 10.17632/vskz4y62s7.1
title: The Susceptibility of Escherichia coli to Antibiotics and Medicinal Plant Extracts Used in Folklore Medicine in Ika North Local Government Area of Delta State Nigeria

description: Medicinal plants are a potential source of new drugs like antimicrobials. The need for new antimicrobials is necessitated by the fact that multi-drug resistance by bacteria is now a common phenomena. The medicinal plants used to treat infectious diseases in Delta were investigated as potential replacement for antibiotics used locally for the treatment of Staph infections. The ethnobotanical use of the plants used is shown in tables 1a and b. This was got from different literature and also by interviewing locals. Polar compounds were extracted with ethanol and methanol while non polar compounds were got with chloroform and n-hexane and are shown in figures 1, 2, 3, 4.These compounds and also aqueous extracts were got from the fifteen medicinal plants used were tested on the growth of the test organism Escherichia coli. the susceptibility of the test organism to the various extracts was accessed using the criteria set by ACCLS, 2012. The data indicates that while the test organism was not susceptible to any of the antibiotics tested but instead showed intermediate susceptibility. The data show that the test organism was susceptible to some of the plants tested and as such could be investigated further as potential sources of new drugs for the treatment of staph infections.
DOI: 10.17632/xmmw97rmpr.1
title: 3D structural alignment of bacterial and mitochondrial SSU rRNA structures with conservation and Solvent Accessible Surface Areas (SASA) data

description: This database includes the 3D alignment of the nts from bacteria SSU rRNA - E. coli (PDB file 4YBB) and mammalian mitochondria - Porcine ( PDB file 5AJ3), base conservation data, and the Surface area solvent accessibility data (SASA) 3D structural alignment of bacterial and mitochondrial SSU rRNA structures: The 3D structures of the E.coli SSU rRNA (PDB entry: 4YBB) and mmt SSU rRNA (PDB entry: 5AJ3) were aligned manually using SwissPDBViewer. We call positions with equivalent nts in the mmt and bacterial 3D structures “Core positions” Base composition at each position in the bacterial and mmt SSU rRNA alignments: 1533 positions in the bacterial alignment that correspond to the E. coli SSU sequence “&gt;000736::E.coli.01 – Escherichia coli” and 961 positions in the mmt alignment that correspond to the S.sc. sequence (SeqID “&gt;00307::AF486866 – Sus scrofa”) were selected ( the only columns of the alignments that we worked with). For each position in the alignment, the total count of each type of base was divided by the total count of bases in that position to calculate the base composition in each position. We refer to these compositions as %A, %C, %G, %U. Analysis of Solvent Accessible Surface Areas (SASA): SASA for the 12S and 16S rRNA from E.coli SSU (PDB entry: 4YBB, chain AA) and mmt-SSU (PDB entry: 5AJ3) were calculated for each atom in the presence and absence of the associated rProteins, using Gerstein’s accessible surface algorithm (Gerstein, 1992) available at the High-Performance Computing server at NIH (https://hpcwebapps.cit.nih.gov/structbio/basic.html). Probe radius used for solvent accessibility calculations was 1.4 Å, typical for water molecule. Estimated SASA of isolated nucleobases: In order to estimate the SASA of the base atoms of an isolated nt of each type (without any other nt or protein nearby), 30 nts of each type of nucleobases (A, U, G or C) were randomly selected and each full nt was saved individually as a PDB file using SwissPDBViewer. Using the PDB files of the single nts as an input for the SASA calculation server, a text file containing calculated SASA of each atom was obtained. A Python program was written to sum the SASA contributions of the base atoms. The average SASA of 30 selected isolated nts of each type of base was calculated. The numbers were G: 210.4, A:195.2, C:168.0, U:161.7 Å^2. Normalized SASA (N-SASA) of nucleobases in each position of bacterial and mmt structures: The absolute SASA for each nt in the reference bacterial and mmt 3D structures was divided by the estimated SASA for an isolated base to determine a normalized SASA (N-SASA) which is more robust to the varying sizes of the bases.
DOI: 10.17632/xw4srn74wh.1
title: Human bone protein and peptide output from PEAKS software

description: Rib bone (&lt; 10 g) were collected post-mortem from five male, and five female deceased subjects. Soft tissue was removed from each rib using a scalpel and a 20 mg block of cortical bone was removed. The sample processing workflow on samples included protein extraction and peptide digestion using a modified acidic demineralization protocol. Data acquisition was performed using Thermo Scientific Q Exactive Plus Orbitrap mass spectrometer coupled to an Easy-nLC 1000 liquid chromatograph (Thermo Scientific; Waltham, MA; USA). Mass spectral data were obtained using a “top-10” data-dependent collection strategy in which an initial MS scan over the range of m/z 380-1800 and a resolution of 70,000 was used to select 10 precursor ions for subsequent MSMS scans. RAW data was exported and analyzed in parallel using two protein identification software programs: PEAKS 7.5 (Bioinformatics Solutions Inc., Waterloo, Ontario, Canada).RAW datafiles were directly imported into software. Oxidation of methionine, carbamidomethylation of cysteine, deamidation of asparagine and glutamine, and hydroxylation of proline were included in the search settings as partial post-translational modifications. Precursor mass error of 15 ppm using monoisotopic mass was used for parent ion identifications and 0.05 Da for fragment ions masses. Protein identifications (IDs) were filtered by a 1% FDR.
DOI: 10.17632/y2z99bkdfc.1
title: Tropical tree species effects on soil pH and biotic factors and the consequences for macroaggregate dynamics

description: Data are from a randomized complete block experiment at La Selva Biological Station, Costa Rica. Data obtained by a wet-slaking method include the fraction of total soil contained within each of five size categories of macroaggregates (0.25-0.5, 0.5-1.0, 1-2, and 2-4 mm diameter) in the 0-15 cm depth interval under four mono-dominant 25-yr-old tree plantations, an unplanted Control, and the adjacent mature forest. Data also include the following variables regarding the macroaggregates in this experiment: carbon, nitrogen, organic and inorganic phosphorus concentrations and mass per g soil and C:N. Soil pH (0-15 cm) was measured for bulk soil. The planted (dominant) tree species in the plantations were: Hieronyma alchorneoides; Pentaclethra macroloba; Virola koschnyi; and Vochysia guatemalensis.
DOI: 10.17632/zm2zgk537f.1
title: Matlab scripts implementing the Nested Sampling algorithm for the estimation of the mechanical property distribution of solids starting from limited and noisy experimental measurements

description: BaesianIdentificationParL.m is the main script SurfacePoints.m function to be mexed (see the first lines for instructions) Solve2DTriaModelLin.m function to be mexed (see the first lines for instructions) BaesianIdentificationNSp_trg04 data file with the reference data, domain BaesianIdentificationNSp_trg04Ex10a_uniax.mat data file with the reference data, 10% error BaesianIdentificationNSp_trg04Exinf_uniax data file with the reference data, 0% error
DOI: 10.3886/e102381v1
title: Commercial Diplomacy and Political Risk ISQ Replication Data

description: Replication data and code for "Commercial Diplomacy and Political Risk", International Studies Quarterly, 62 (1): 94-107, March 2018.
DOI: 10.5281/zenodo.1211667
title: Plant Phenology Forecasts

description: These are forecasts of plant phenology for 66 species of plants in North America. The forecasts models are made using data from the National Phenology Network, and climate drivers from the NOAA CFSv2 forecast model and the PRISM Climate Group. Maps from the data are also available at the site http://phenology.naturecast.org.
description: The files are in NetCDF format and are most easily accessed using the xarray python package. The date in the filename is the date on which a forecast was made. The version of the dataset refers to the date a set of forecats was uploaded.
DOI: 10.5281/zenodo.1211729
title: Aerial Imagery From Flights In Robotics Simulator

description: Dataset contains aerial images captured in a simulated 3D environment. Ortho photo images from USGS Aerial Imagery dataset was used as ground view. Gazebo simulator with PX4 flight controller software and a plane model was used to simulate flights at different altitude and trajectories over different maps.

Each dataset is provided in a zip file, named under two character and number abbreviation, which can be interpreted by the first letter for map type (U - urban, F - forest), second letter stands for trajectory type (L - straight line, C - circular trajectory, R - rectangular trajectory) and the number stands for altitude in meters, e.g. FC-300, means forest map, circular trajectory at 300 meters altitude. Alongside image data, a text file containing CSV data is included, which contains aircraft attitude and geographical information of each image.

Additionally, maps used for simulation environment are included in this dataset, maps of the same area captured on different years are also included, which can be used to evaluate algorithms matching against maps.

ROS Publisher node is available in GitHub: https://github.com/jureviciusr/AIRDatasetPublisher
DOI: 10.5281/zenodo.1211730
title: Aerial Imagery From Flights In Robotics Simulator

description: Dataset contains aerial images captured in a simulated 3D environment. Ortho photo images from USGS Aerial Imagery dataset was used as ground view. Gazebo simulator with PX4 flight controller software and a plane model was used to simulate flights at different altitude and trajectories over different maps.

Each dataset is provided in a zip file, named under two character and number abbreviation, which can be interpreted by the first letter for map type (U - urban, F - forest), second letter stands for trajectory type (L - straight line, C - circular trajectory, R - rectangular trajectory) and the number stands for altitude in meters, e.g. FC-300, means forest map, circular trajectory at 300 meters altitude. Alongside image data, a text file containing CSV data is included, which contains aircraft attitude and geographical information of each image.

Additionally, maps used for simulation environment are included in this dataset, maps of the same area captured on different years are also included, which can be used to evaluate algorithms matching against maps.

ROS Publisher node is available in GitHub: https://github.com/jureviciusr/AIRDatasetPublisher
DOI: 10.5523/bris.26bgg8ae8t05o2jzwp689nic4x
title: Data for paper: Modal nudging in nonlinear elasticity: Tailoring the elastic post-buckling behaviour of engineering structures

description: Figures for the publication: Modal nudging in nonlinear elasticity: Tailoring the elastic post-buckling behaviour of engineering structures
DOI: 10.15151/esrf-es-93598391
title: Macromolecular Crystallography in Lyon/Toulouse/Bordeaux
IBCP-MMSB / IPBS / IECB IBGC CBMN
DOI: 10.17909/t9x97r
title: Photometric Catalogs Surrounding Nearby Core-Collapse Supernovae ("CCSNE")

description: CCSNE (HST Proposal #14786) is a high-precision, photometric survey of areas surrounding historic, nearby core-collapse supernovae. The catalogs are used to infer the initial masses of the progenitors by fitting stellar evolution models to the color-magnitude distributions of the resolved stellar populations near the supernovae. Each area is observed in two filters, either F606W+F814W, F435W+F606W, or F438W+F606W. The drizzled mosaics and source catalogs are provided for all the observed fields.
DOI: 10.5281/zenodo.1211827
title: Feeding Behavioral Order Data

description: Raw feeding behavioural data output from BORIS in .csv format.
DOI: 10.5281/zenodo.1211828
title: Feeding Behavioral Order Data

description: Raw feeding behavioural data output from BORIS in .csv format.
DOI: 10.5281/zenodo.1212478
title: Sigfox And Lorawan Datasets For Fingerprint Localization In Large Urban And Rural Areas

description: The goal of these LPWAN datasets is to provide the global research community with a benchmark tool to evaluate fingerprint localization algorithms in large outdoor environments with various properties. An identical collection methodology was used for all datasets: during a period of three months, numerous devices which contain a GPS receiver periodically obtained new location data, which was sent to a local data server via a Sigfox or LoRaWAN message. Together with network information such as the receiving time of the message, base station IDs' of all receiving base stations and the Received Signal Strength Indicator (RSSI) per base station, this location data was stored in one of the three LPWAN datasets: 


	<strong>lorawan_dataset_antwerp.csv</strong>

	
		123 529 LoRaWAN messages, obtained in the city center of Antwerp, Belgium
	
	
	<strong>sigfox_dataset_antwerp.csv</strong>
	
		14 378 Sigfox messages, obtained in the city center of Antwerp, Belgium
	
	
	<strong>sigfox_dataset_rural.csv</strong>
	
		25 638 Sigfox messages, obtained in a rural area between Antwerp, Belgium and Ghent, Belgium
	
	


As the rural and urban Sigfox datasets were recorded in adjacent areas, many base stations that are located at the border of these areas can be found in both datasets. However, they do not necessarily share the same identifier: e.g. ‘BS 1’ in the urban Sigfox dataset could be the same base station as ‘BS 36’ in the rural Sigfox dataset. If the user intends to combine both Sigfox datasets, the mapping of the ID's of these base stations can be found in the file:


	<strong>sigfox_bs_mapping.csv</strong>


The collection methodology of the datasets, and the first results of a basic fingerprinting implementation are documented in the following journal paper:

http://www.mdpi.com/2306-5729/3/2/13
DOI: 10.5287/bodleian:9r6aywpgq
title: Human alpha-aminoadipic semialdehyde synthase (AASS); A Target Enabling Package

description: This work provides the early tools to develop substrate reduction inhibitors for a genetic childhood seizure disorder, with the hypothesis to target the enzyme (AASS) upstream of the defective gene (ALDH7A1) in the human lysine metabolic pathway. This TEP package includes recombinant human AASS purification protocols, structures of the AASS second domain in different states, in vitro assays to detect ligand binding (differential scanning fluorimetry) and enzyme activity (NADH formation) of human AASS, as well as initial chemical matters.
DOI: 10.5287/bodleian:qqovzvqkp
title: Human RECQL5 Helicase; A Target Enabling Package

description: RECQL5 is a member of the RecQ family of helicase which have important functions in DNA repair pathways and maintenance of genome integrity. RECQL5 has recently been identified as a synthetic lethal candidate in various haematological malignancies and has been verified by knockdown to sensitize myeloproliferative neoplasms (MPN) to DNA damaging agents. In this TEP we have expressed purified and determined the first ever crystal structures of RECQL5, in both APO and ADP/Mg2+ bound forms which crystallize in two distinctly different conformations. In vitro DNA stimulated ATPase assays suitable for high throughput screening have been developed as well as lower throughput orthogonal assays to verify potential hits. A fragment screening campaign has been initiated and single fragment hit has identified a potential allosteric site that may be targeted to block the transition between conformations that it thought to be part of the helicase mechanism. Finally included as part of the package we present 3 validated RECQL5 binding nanobodies, one of which is a potent inhibitor of RECQL5 ATPase activity and is suitable for use as a tool reagent to investigate inhibition of RECQL5 and its complexes in vitro.
DOI: 10.16904/1000001.4
title: 2012 Vegetation Height Model NFI

description: A national vegetation height model was calculated for Switzerland using digital aerial images. We used the stereo aerial images acquired by the Federal Office of Topography swisstopo using the ADS80 sensor to first calculate a digital surface model (DSM) with a very high spatial resolution (1 × 1 m). The DSM was then normalized to obtain the actual vegetation heights using a digital terrain model (DTM) based on laser data with the buildings masked out, and to produce a vegetation height model (VHM). Such a model will be calculated in the framework of the Swiss National Forest Inventory (NFI) with consistent methods and a very high level of detail. For covering the whole of Switzerland, we use summer aerial images from six years.
DOI: 10.5255/ukda-sn-6644-7
title: Annual Respondents Database, 1973-2008: Secure Access
DOI: 10.5287/bodleian:y0r1mkpmx
title: Dolichyl-Phosphate Alpha-N-Acetyl Glucosaminyl Transferase (DPAGT1); A Target Enabling Package

description: The ER integral membrane enzyme dolichyl-phosphate alpha-N-acetyl glucosaminyl phosphotransferase (DPAGT1) catalyses the first step in the synthesis of the oligosaccharide-P-P-dolichol unit which provides the glycans structure for N-glycosylation of proteins. Mutations in DPAGT1 cause two muscle weakness conditions, limb-girdle congenital myasthenic syndrome (CMS) and congenital disorder of glycosylation type 1j (CDG1j). DPAGT1 overexpression has also been implicated in oral cancer. We have produced and solved structures of this integral membrane enzyme, DPAGT1 with the V264G mutation found in a patient with CMS, and complexes with a 50 nM inhibitor, tunicamycin. We have developed enzymatic activity and thermostability assays which have allowed us to assess the activity and stability of DPAGT1 mutants and the effect of small molecules. There are &gt; 20 DPAGT1 associated missense variants in patients with CMS and CDG1j. We have mapped these mutations to the structure, and we will used the assays described here to assess how the activity and stability of DPAGT1 is affected by these missense variants.