cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27795573
title: OncoDrug+ data 2.0

description: Combinations of cancer drugs have the potential to overcome resistance, improve the response rate of existing drugs and reduce dose-limiting toxicity associated with single agents. Existing drug combination databases only provide response data, such as synergy scores between two drugs, without important contextual information to assist oncologists in matching their patients with these combinations in an evidence-based way. To address this gap, we constructed an unique dataset by manually collecting and integrating drug combinations and corresponding evidences from FDA databases, clinical guidelines, clinical trials, clinical case reports, patient-derived tumor xenograft models, cell line models and bioinformatics predictions.Records classified into Level A were derived from professional clinical guidelines or included in the FDA database.Records classified into Level B were collected from clinical trials and individual case reports in electronic medical records.Records classified into Level C were obtained from in vivo or in vitro experiments, including PDX mouse models, cell line models and high-throughput drug screening experiments.Records classified into Level D dataset were derived from drug combination predictions based on bioinformatic algorithms.Our manuscript about this dataset has been submitted.
DOI: 10.6084/m9.figshare.27795573.v3
title: OncoDrug+ data 2.0

description: Combinations of cancer drugs have the potential to overcome resistance, improve the response rate of existing drugs and reduce dose-limiting toxicity associated with single agents. Existing drug combination databases only provide response data, such as synergy scores between two drugs, without important contextual information to assist oncologists in matching their patients with these combinations in an evidence-based way. To address this gap, we constructed an unique dataset by manually collecting and integrating drug combinations and corresponding evidences from FDA databases, clinical guidelines, clinical trials, clinical case reports, patient-derived tumor xenograft models, cell line models and bioinformatics predictions.Records classified into Level A were derived from professional clinical guidelines or included in the FDA database.Records classified into Level B were collected from clinical trials and individual case reports in electronic medical records.Records classified into Level C were obtained from in vivo or in vitro experiments, including PDX mouse models, cell line models and high-throughput drug screening experiments.Records classified into Level D dataset were derived from drug combination predictions based on bioinformatic algorithms.Our manuscript about this dataset has been submitted.
DOI: 10.6084/m9.figshare.27795573.v4
title: OncoDrug+ data 2.0

description: Combinations of cancer drugs have the potential to overcome resistance, improve the response rate of existing drugs and reduce dose-limiting toxicity associated with single agents. Existing drug combination databases only provide response data, such as synergy scores between two drugs, without important contextual information to assist oncologists in matching their patients with these combinations in an evidence-based way. To address this gap, we constructed an unique dataset by manually collecting and integrating drug combinations and corresponding evidences from FDA databases, clinical guidelines, clinical trials, clinical case reports, patient-derived tumor xenograft models, cell line models and bioinformatics predictions.Records classified into Level A were derived from professional clinical guidelines or included in the FDA database.Records classified into Level B were collected from clinical trials and individual case reports in electronic medical records.Records classified into Level C were obtained from in vivo or in vitro experiments, including PDX mouse models, cell line models and high-throughput drug screening experiments.Records classified into Level D dataset were derived from drug combination predictions based on bioinformatic algorithms.Our manuscript about this dataset has been submitted.
DOI: 10.15468/dl.zmqqvb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lemna gibba L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((31.8862 -21.3285,30.5701 -20.3186,30.5701 -24.0715,35.5909 -24.0715,35.6007 -24.0157,35.6007 -23.8125,35.4969 -23.7035,35.6007 -23.165,35.6007 -22.9702,35.227 -22.2482,34.6862 -21.6944,34.013 -21.3095,33.5 -21.1593,32.9675 -21.1092,32.4352 -21.1612,31.8862 -21.3285))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042494-250525065834625/datasets/export for details.
DOI: 10.15468/dl.a3yvxb
title: Occurrence Download

description: A dataset containing 363969 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insekten Sachsen"
 ]
}

 The dataset includes 363969 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042487-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndt2y3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Closterium Nitzsch ex Ralfs, 1848",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.0214 -34.0501,25.5395 -34.1098,25.5395 -32.9007,20.509 -32.9007,20.509 -34.5676,20.524 -34.555,20.8859 -34.5419,20.9606 -34.4398,21.2995 -34.5131,21.5296 -34.4338,21.8696 -34.4439,22.0323 -34.2835,22.221 -34.2428,22.2566 -34.1304,22.5993 -34.0741,22.9652 -34.1674,23.4069 -34.1858,23.4955 -34.0792,23.6056 -34.0563,24.8471 -34.2877,24.9447 -34.2397,25.0214 -34.0501))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042495-250525065834625/datasets/export for details.
DOI: 10.17632/ghw96chp9d
title: Resultados de la Revisión de Alcance (Scoping Review Results)

description: La finalidad de la revisión de alcance fue mapear sistemáticamente la evidencia científica sobre la participación paterna en las evaluaciones y en las intervenciones familiares realizadas en los Servicios de Atención a la Infancia, la Adolescencia y las Familias para conocer las características de la producción científica en este campo de estudio. Se realizó la búsqueda de datos en varias bases de datos y se seleccionaron finalmente 47 manuscritos. Los hallazgos evidencian la predominancia de estudios cualitativos en los países de habla anglosajona. Además, se centran en las experiencias de las madres y de los padres en estos servicios, destacando las barreras para su participación y la relación con los/las profesionales. No obstante, se señala la falta de investigaciones centradas en las experiencias únicas de las figuras paternas en el contexto del bienestar y de la protección infantil.
DOI: 10.17632/ghw96chp9d.1
title: Resultados de la Revisión de Alcance (Scoping Review Results)

description: La finalidad de la revisión de alcance fue mapear sistemáticamente la evidencia científica sobre la participación paterna en las evaluaciones y en las intervenciones familiares realizadas en los Servicios de Atención a la Infancia, la Adolescencia y las Familias para conocer las características de la producción científica en este campo de estudio. Se realizó la búsqueda de datos en varias bases de datos y se seleccionaron finalmente 47 manuscritos. Los hallazgos evidencian la predominancia de estudios cualitativos en los países de habla anglosajona. Además, se centran en las experiencias de las madres y de los padres en estos servicios, destacando las barreras para su participación y la relación con los/las profesionales. No obstante, se señala la falta de investigaciones centradas en las experiencias únicas de las figuras paternas en el contexto del bienestar y de la protección infantil.
DOI: 10.5281/zenodo.15655100
title: Datasets for Soil microbial metabolic limitations under subalpine coniferous and broad-leaved forests responding to litter input and removal treatments
DOI: 10.5281/zenodo.15621909
title: Datasets for Soil microbial metabolic limitations under subalpine coniferous and broad-leaved forests responding to litter input and removal treatments
DOI: 10.15468/dl.jnkr3s
title: Occurrence Download

description: A dataset containing 2525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Switzerland, Austria, Italy)",
 "TaxonKey is Coenonympha darwiniana Staudinger, 1871"
 ]
}

 The dataset includes 2525 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042496-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.py2hnt
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lemna gibba L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042497-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/7rks5vk5pp.1
title: Article : Routine Sarcopenia Evaluation: A Missing Piece in Crohn’s Disease Management?

description: Data Availability
DOI: 10.17632/28cdkwpksf
title: Soft X Ray Tilt Series Denoising

description: This code is the implementation of denoising Soft X-Ray tilt series slices. Please run the denoise_tomo.py file for denoising tilt series slices.
DOI: 10.17632/28cdkwpksf.1
title: Soft X Ray Tilt Series Denoising

description: This code is the implementation of denoising Soft X-Ray tilt series slices. Please run the denoise_tomo.py file for denoising tilt series slices.
DOI: 10.5281/zenodo.15503282
title: BrAIn: A comprehensive artificial intelligence-based morphology analysis system for brain organoids and neuroscience

description: We introduce BrAIn, a DL-based application for analyzing the developmental progression of BOs. BrAIn tracks their evolution from embryoid bodies (EBs) and quantifies parameters including area, Feret diameter, perimeter, roundness, and circularity. It also classifies budding and abnormal morphologies of 3D organoids and detects monolayer neural rosette structures, key features of neuronal differentiation. Designed with accessibility in mind, BrAIn provides a no-code interface, enabling researchers of all technical backgrounds to conduct advanced morphological analyses with ease.

📒 Citation

If you use BrAIn in your work, please cite:

Kahveci B., et al. BrAIn: A comprehensive artificial intelligence-based morphology analysis system for brain organoids and neuroscience. (2025)
DOI: 10.5281/zenodo.15513127
title: BrAIn: A comprehensive artificial intelligence-based morphology analysis system for brain organoids and neuroscience

description: We introduce BrAIn, a DL-based application for analyzing the developmental progression of BOs. BrAIn tracks their evolution from embryoid bodies (EBs) and quantifies parameters including area, Feret diameter, perimeter, roundness, and circularity. It also classifies budding and abnormal morphologies of 3D organoids and detects monolayer neural rosette structures, key features of neuronal differentiation. Designed with accessibility in mind, BrAIn provides a no-code interface, enabling researchers of all technical backgrounds to conduct advanced morphological analyses with ease.

📒 Citation

If you use BrAIn in your work, please cite:

Kahveci B., et al. BrAIn: A comprehensive artificial intelligence-based morphology analysis system for brain organoids and neuroscience. (2025)
DOI: 10.15468/dl.zk56g9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Closterium Nitzsch ex Ralfs, 1848",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((32.064 -28.9416,32.4847 -28.5786,30.5701 -28.5786,30.5701 -30.7329,30.6252 -30.6659,31.4179 -29.4257,31.8178 -29.0299,32.064 -28.9416))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042498-250525065834625/datasets/export for details.
DOI: 10.17632/dmmrb87mgy
title: MIRNA_DDR

description: DNA damage-sensing (DDS) and DNA damage-repair (DDR) mechanisms are essential for the fidelity of genetic information transmission. microRNAs (miRs) function as micromanagers of gene expression. Herein, we aimed to investigate the links between miRs and the translation of specific mRNAs encoding proteins involved in genomic DDS and DDR and to screen drugs that have high binding affinity to the selected miRs, which may serve as cancer therapeutics. To accomplish these aims, we used a variety of computational methods. The genes and miRNAs involved in the DDS and DDR mechanisms were retrieved, cleaned and prepared using scripts, and various libraries were used to obtain their 3-D structures. Genes interacting with miRs were enriched based on multiple database annotations using Enrichr KG. Finally, we generated gene-disease-miR-drug networks to study the linkages between the compounds and miR molecules under investigation.
DOI: 10.17632/dmmrb87mgy.1
title: MIRNA_DDR

description: DNA damage-sensing (DDS) and DNA damage-repair (DDR) mechanisms are essential for the fidelity of genetic information transmission. microRNAs (miRs) function as micromanagers of gene expression. Herein, we aimed to investigate the links between miRs and the translation of specific mRNAs encoding proteins involved in genomic DDS and DDR and to screen drugs that have high binding affinity to the selected miRs, which may serve as cancer therapeutics. To accomplish these aims, we used a variety of computational methods. The genes and miRNAs involved in the DDS and DDR mechanisms were retrieved, cleaned and prepared using scripts, and various libraries were used to obtain their 3-D structures. Genes interacting with miRs were enriched based on multiple database annotations using Enrichr KG. Finally, we generated gene-disease-miR-drug networks to study the linkages between the compounds and miR molecules under investigation.
DOI: 10.15468/dl.qr265j
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lemna gibba L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042499-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/gpdsjvd9hy
title: Industrial small experimental data

description: The six experimental datasets presented in this paper are openly available at the Liu and Li (2020), Gandla et al. (2020), Lin et al. (2018), Li et al. (2021), and UCI repository.
DOI: 10.15468/dl.uxf3nj
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.26.2_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Falco peregrinus Tunstall, 1771",
 "Year 2018-2024"
 ]
}

 The dataset includes 41 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042501-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/gpdsjvd9hy.1
title: Industrial small experimental data

description: The six experimental datasets presented in this paper are openly available at the Liu and Li (2020), Gandla et al. (2020), Lin et al. (2018), Li et al. (2021), and UCI repository.
DOI: 10.17632/w36xh7mw26
title: Comparing Developmental Neural Incongruency Effects in Reading and Arithmetic Among Children: An ERP Study

description: This data was measured using reading verification and mathematics verification tasks in children.
DOI: 10.17632/w36xh7mw26.1
title: Comparing Developmental Neural Incongruency Effects in Reading and Arithmetic Among Children: An ERP Study

description: This data was measured using reading verification and mathematics verification tasks in children.
DOI: 10.5281/zenodo.15655208
title: Klütz Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.15655209
title: Klütz Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.17632/jnrj2r5v49
title: Bufo_bufo_orientation

description: The data represent the orientation of Bufo bufo tadpoles, in degrees, starting from North (0°), in three stream sectors inside Pestera cu Apa from Cheile Garlistei, Romania.
DOI: 10.17632/jnrj2r5v49.1
title: Bufo_bufo_orientation

description: The data represent the orientation of Bufo bufo tadpoles, in degrees, starting from North (0°), in three stream sectors inside Pestera cu Apa from Cheile Garlistei, Romania.
DOI: 10.15468/dl.wjf636
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Closterium Nitzsch ex Ralfs, 1848",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.5808 -24.13,35.5909 -24.0715,30.5701 -24.0715,30.5701 -28.5786,32.4847 -28.5786,32.55 -28.5222,33.0346 -26.8668,32.9741 -26.7838,33.0415 -26.059,32.9304 -26.0011,32.7994 -26.1281,32.6834 -26.0015,32.813 -25.8728,32.8513 -25.7166,33.3048 -25.3731,35.1489 -24.6699,35.5808 -24.13))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042503-250525065834625/datasets/export for details.
DOI: 10.17632/knv6264vkr
title: Impact of the Zinc Antiviral Protein on the Genomic Composition of RNA Viruses Infecting Vertebrates

description: The composition of viral genomes, influenced by host-specific biases, offers insights into their evolutionary history. Vertebrate cells counter viral infection with interferons (IFNs) that activate IFN-stimulated genes, including the zinc-finger antiviral protein (ZAP), which binds CpG-rich single-stranded viral RNA (ssRNA). We trace the origin of ZAP along the vertebrate phylogeny and highlight its earlier emergence than previously described. Our analysis of ZAP orthologs shows that ZAP originated from a PARP12-like ancestor in the last common ancestor of tetrapods and lungfishes, more than 400 million years ago. Amphibian ZAP shares structural domains with its mammalian counterpart, though it typically lacks the C-terminal CAAX-box motif. The conserved RNA-binding domain in lungfish and tetrapod suggests an early functional reassignment. Subsequently, we found that CpG suppression in ssRNA viral genomes increases with the phylogenetic proximity of hosts to mammals, with amniote-infecting viruses showing the strongest bias, likely reflecting adaptation to ZAP-mediated immunity. These findings suggest that ZAP’s evolutionary steps include gene duplication in jawed vertebrates, structural adaptations in sarcopterygians, and membrane targeting capabilities in an early tetrapod, reflecting the complex co-evolution of host antiviral defenses and viral evasion strategies.