cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7532306.v1
title: Additional file 7: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Splice site diversity per species. The occurrence of all possible splice site combinations was counted for all species as described in the method section. (TXT 67 kb)
DOI: 10.6084/m9.figshare.7532300
title: Additional file 6: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Number of splice sites per species. Canonical and non-canonical splice sites were counted per species as described in the method section. (XLSX 9 kb)
DOI: 10.7284/109157
title: Multiplexed data collected during research cruise KM0804 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532294
title: Additional file 5: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Genome statistics. Statistical information about each analyzed genome sequence and the average values across all species are listed. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7532294.v1
title: Additional file 5: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Genome statistics. Statistical information about each analyzed genome sequence and the average values across all species are listed. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7532300.v1
title: Additional file 6: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Number of splice sites per species. Canonical and non-canonical splice sites were counted per species as described in the method section. (XLSX 9 kb)
DOI: 10.7284/109158
title: INS (Inertial Navigation System) data collected during research cruise KM0804 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100856
title: Multibeam Echosounder data collected during research cruise KM0804 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532276
title: Additional file 2: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: RNA-Seq data sets. List of Sequence Read Archive accession numbers of all included RNA-Seq data sets sorted by species. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.7532276.v1
title: Additional file 2: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: RNA-Seq data sets. List of Sequence Read Archive accession numbers of all included RNA-Seq data sets sorted by species. (XLSX 21 kb)
DOI: 10.7284/100857
title: Multibeam Echosounder data collected during research cruise KM0804 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532267
title: Additional file 1: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Analysed data sets. List of investigated genome sequences and corresponding annotation. Md5sums are given for all files. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7532267.v1
title: Additional file 1: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Analysed data sets. List of investigated genome sequences and corresponding annotation. Md5sums are given for all files. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7532255
title: Additional file 17: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Supported splice sites. Percentage of splice sites supported by RNA-Seq reads is given per species. (XLSX 6 kb)
DOI: 10.7284/109162
title: INS (Inertial Navigation System) data collected during research cruise KM0805 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7532246
title: Additional file 4: of Patterns of Fasciola hepatica infection in Danish dairy cattle: implications for on-farm control of the parasite based on different diagnostic methods

description: Table S1. Summary of snails collected in 2017 that were analysed by PCR for snail species and F. hepatica infection status. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7532249
title: Additional file 16: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Conservation of non-canonical splice sites. Non-canonical splice sites at conserved positions in putative homologous of At1g79350 across various species. (XLSX 5 kb)
DOI: 10.6084/m9.figshare.7532255.v1
title: Additional file 17: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Supported splice sites. Percentage of splice sites supported by RNA-Seq reads is given per species. (XLSX 6 kb)
DOI: 10.7284/100858
title: Multibeam Echosounder data collected during research cruise KM0805 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532249.v1
title: Additional file 16: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Conservation of non-canonical splice sites. Non-canonical splice sites at conserved positions in putative homologous of At1g79350 across various species. (XLSX 5 kb)
DOI: 10.6084/m9.figshare.7532246.v1
title: Additional file 4: of Patterns of Fasciola hepatica infection in Danish dairy cattle: implications for on-farm control of the parasite based on different diagnostic methods

description: Table S1. Summary of snails collected in 2017 that were analysed by PCR for snail species and F. hepatica infection status. (XLSX 11 kb)
DOI: 10.7284/100859
title: Multibeam Echosounder data collected during research cruise KM0805 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532237
title: Additional file 14: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Non-canonical splice sites in single copy genes. The occurrence of non-canonical splice sites in single copy genes (BUSCO) and in all genes was assessed per species. (TXT 7 kb)
DOI: 10.6084/m9.figshare.7532237.v1
title: Additional file 14: of Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

description: Non-canonical splice sites in single copy genes. The occurrence of non-canonical splice sites in single copy genes (BUSCO) and in all genes was assessed per species. (TXT 7 kb)
DOI: 10.7284/109164
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KM0806 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109163
title: Gravimeter data collected during research cruise KM0806 using a L&R S-33 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109165
title: INS (Inertial Navigation System) data collected during research cruise KM0806 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100860
title: Multibeam Echosounder data collected during research cruise KM0806 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100861
title: Multibeam Echosounder data collected during research cruise KM0806 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109167
title: Multiplexed data collected during research cruise KM0807 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana
DOI: 10.7284/109168
title: INS (Inertial Navigation System) data collected during research cruise KM0807 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100863
title: Multibeam Echosounder data collected during research cruise KM0807 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana
DOI: 10.7284/109171
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KM0808 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7532144
title: Additional file 1: of Classification of triple-negative breast cancers based on Immunogenomic profiling

description: Table S1. The 29 immune signatures represented by 29 different gene sets. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.7532144.v1
title: Additional file 1: of Classification of triple-negative breast cancers based on Immunogenomic profiling

description: Table S1. The 29 immune signatures represented by 29 different gene sets. (XLSX 41 kb)
DOI: 10.7284/109173
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise KM0808 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109170
title: Gravimeter data collected during research cruise KM0808 using a L&R S-33 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109172
title: INS (Inertial Navigation System) data collected during research cruise KM0808 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100864
title: Multibeam Echosounder data collected during research cruise KM0808 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100865
title: Multibeam Echosounder data collected during research cruise KM0808 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109174
title: Multiplexed data collected during research cruise KM0809 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532084
title: Additional file 1: of Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

description: Table S1. Other known Eucalyptus chloroplast genomes. (XLSX 9 kb)
DOI: 10.7284/100866
title: Multibeam Echosounder data collected during research cruise KM0809 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532084.v1
title: Additional file 1: of Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

description: Table S1. Other known Eucalyptus chloroplast genomes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7532072
title: Additional file 15: of Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

description: Table S2.. The result of NOVOPlast assembly (XLSX 9 kb)
DOI: 10.7284/100867
title: Multibeam Echosounder data collected during research cruise KM0809 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7532072.v1
title: Additional file 15: of Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

description: Table S2.. The result of NOVOPlast assembly (XLSX 9 kb)
DOI: 10.7284/109176
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KM0810 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109177
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise KM0810 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100868
title: Multibeam Echosounder data collected during research cruise KM0810 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100869
title: Multibeam Echosounder data collected during research cruise KM0810 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109178
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KM0811 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100870
title: Multibeam Echosounder data collected during research cruise KM0811 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100871
title: Multibeam Echosounder data collected during research cruise KM0811 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109181
title: Multiplexed data collected during research cruise KM0812 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana
DOI: 10.7284/109182
title: INS (Inertial Navigation System) data collected during research cruise KM0812 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7531979
title: Additional file 9: of Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

description: List of proteins from P. pinaster, P. taeda and P. lambertiana clustered together according to the eggNOG group of their respective best orthologous sequenced in EMBL’s eggNOG database of functionally annotated proteins. (TXT 3127 kb)
DOI: 10.7284/100872
title: Multibeam Echosounder data collected during research cruise KM0812 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7531979.v1
title: Additional file 9: of Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

description: List of proteins from P. pinaster, P. taeda and P. lambertiana clustered together according to the eggNOG group of their respective best orthologous sequenced in EMBL’s eggNOG database of functionally annotated proteins. (TXT 3127 kb)
DOI: 10.7284/100873
title: Multibeam Echosounder data collected during research cruise KM0812 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana
DOI: 10.7284/109183
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KM0813 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7531964
title: Additional file 3: of Reduced nuclear DNA methylation and mitochondrial transcript changes in adenomas do not associate with mtDNA methylation

description: Supplementary data. Nuclear and mtDNA RNA-seq gene expression levels. WGBS read counts. (XLSX 10324 kb)
DOI: 10.6084/m9.figshare.7531964.v1
title: Additional file 3: of Reduced nuclear DNA methylation and mitochondrial transcript changes in adenomas do not associate with mtDNA methylation

description: Supplementary data. Nuclear and mtDNA RNA-seq gene expression levels. WGBS read counts. (XLSX 10324 kb)
DOI: 10.7284/100874
title: Multibeam Echosounder data collected during research cruise KM0813 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7531946
title: Additional file 2: of Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

description: Reference transcriptome of P. pinaster zygotic embryogenesis with annotations from BRH to the proteomes of P. taeda, P. lambertiana and A. thaliana, and from homology to proteins in NCBI databases. Table S1: List of assembled transcripts, longest ORFs, and corresponding predicted proteins. Table S2: Annotation information for the predicted proteins derived from the longest ORFs. Table S3: List of short non-coding transcripts without an ORF that were excluded. (XLSX 11164â kb)
DOI: 10.6084/m9.figshare.7531946.v1
title: Additional file 2: of Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

description: Reference transcriptome of P. pinaster zygotic embryogenesis with annotations from BRH to the proteomes of P. taeda, P. lambertiana and A. thaliana, and from homology to proteins in NCBI databases. Table S1: List of assembled transcripts, longest ORFs, and corresponding predicted proteins. Table S2: Annotation information for the predicted proteins derived from the longest ORFs. Table S3: List of short non-coding transcripts without an ORF that were excluded. (XLSX 11164â kb)
DOI: 10.7284/101374
title: Multibeam Echosounder data collected during research cruise KM0814 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7531937
title: Additional file 1: of Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

description: List of all sequences of proteins in the final proteome encoded by the reference transcriptome of P. pinaster zygotic embryogenesis. Only the longest ORF possibility per transcript was translated into protein sequence to generate the final proteome. (FASTA 14164â kb)
DOI: 10.6084/m9.figshare.7531937.v1
title: Additional file 1: of Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

description: List of all sequences of proteins in the final proteome encoded by the reference transcriptome of P. pinaster zygotic embryogenesis. Only the longest ORF possibility per transcript was translated into protein sequence to generate the final proteome. (FASTA 14164â kb)
DOI: 10.7284/109185
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KM0815 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100875
title: Multibeam Echosounder data collected during research cruise KM0815 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109186
title: Multiplexed data collected during research cruise KM0816 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana
DOI: 10.7284/100876
title: Multibeam Echosounder data collected during research cruise KM0816 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7531895
title: Additional file 12: of Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

description: Results from the edgeR analysis for the identification of differentially expressed transcripts between each pair of consecutive stages at FDR
DOI: 10.7284/109189
title: Multiplexed data collected during research cruise KM0817 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.7531895.v1
title: Additional file 12: of Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

description: Results from the edgeR analysis for the identification of differentially expressed transcripts between each pair of consecutive stages at FDR
DOI: 10.6084/m9.figshare.7531889
title: Additional file 11: of Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

description: Transcripts abundance per developmental time point (0D_eff_counts to 25D_eff_counts). (XLSX 4407â kb)
DOI: 10.7284/109190
title: INS (Inertial Navigation System) data collected during research cruise KM0817 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7531886
title: Additional file 2 of Parameter estimation of qualitative biological regulatory networks on high performance computing hardware

description: SMBIONET FILE 2. The SMBioNet file contains source code of qualitative model of Fibroblast Growth Factor (FGF) Signalling in Drosophila melanogaster. (ZIP 1 kb)
DOI: 10.6084/m9.figshare.7531889.v1
title: Additional file 11: of Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

description: Transcripts abundance per developmental time point (0D_eff_counts to 25D_eff_counts). (XLSX 4407â kb)
DOI: 10.6084/m9.figshare.7531880
title: Additional file 10: of Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

description: Number of proteins from P. pinaster, P. taeda and P. lambertiana clustered together according to the eggNOG group of their respective best orthologous sequenced in EMBL’s eggNOG database of functionally annotated proteins. Information on each eggNOG group is complemented by a general category and its description. (XLSX 844 kb)
DOI: 10.6084/m9.figshare.7531886.v1
title: Additional file 2 of Parameter estimation of qualitative biological regulatory networks on high performance computing hardware

description: SMBIONET FILE 2. The SMBioNet file contains source code of qualitative model of Fibroblast Growth Factor (FGF) Signalling in Drosophila melanogaster. (ZIP 1 kb)
DOI: 10.6084/m9.figshare.7531877
title: Additional file 1 of Parameter estimation of qualitative biological regulatory networks on high performance computing hardware

description: SMBIONET FILE 1. The input file used for computing model parameters for the Hexosamine Biosynthetic Pathway (HBP). The sections entitled VAR, REG, PARA and CTL corresponds to the allowed expression levels of entities, interactions in the Biological Regulatory Network(BRN), permissible parameter range of each entity and CTL formulas, respectively. (ZIP 1 kb)
DOI: 10.6084/m9.figshare.7531880.v1
title: Additional file 10: of Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

description: Number of proteins from P. pinaster, P. taeda and P. lambertiana clustered together according to the eggNOG group of their respective best orthologous sequenced in EMBL’s eggNOG database of functionally annotated proteins. Information on each eggNOG group is complemented by a general category and its description. (XLSX 844 kb)
DOI: 10.7284/100877
title: Multibeam Echosounder data collected during research cruise KM0817 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana