cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48443/9g10-ep60
title: Soil temperature (DP1.00041.001)
title: RELEASE-2023

description: Soil temperature is measured at various depths below the soil surface from approximately 2 cm down to 200 cm at non-permafrost sites (down to 300 cm at Alaskan sites). Soil temperature influences the rate of biogeochemical cycling, decomposition, and root and soil biota activity. In addition, soil temperature can impact the hydrologic cycle since it controls whether soil water is in a liquid or solid state. Measurements are made in vertical profiles consisting of up to nine depths in all five instrumented soil plots at each terrestrial site, and presented as 1-minute and 30-minute averages.

Latency:
Data collected in any given month are published during the second full week of the following month.

This data product is not currently available at the PUUM site (Hawaii) due to the initial soil characterization indicating the soil was too shallow to allow the standard sensor to be installed. An alternative sensor was installed, but it is not currently compatible with the data processing pipeline. Future upgrades to the data processing pipeline will allow the data product to be produced, including retroactively, but this is not expected to occur soon. In the interim, raw sensor data are available upon request via the NEON Contact Form, but have not undergone any quality control, quality assurance, or data flagging.

At four Alaskan sites (HEAL, BONA, TOOL, and BARR) the sensors experience frost heaving which regularly changes the measurement depths. New measurement depths are recorded when technician time and other priorities allow and depths are updated, but sensor depths may change between remeasuring events. In addition, the soil plots at HEAL have been subsiding faster than the surrounding area which may alter their representativeness of the overall site.
description: When possible the soil plots were arranged in a transect with the first plot approximately 15-40 m from the tower in the expected dominant airshed. The middle of airshed was used as the transect vector and plot spacing was based on the distance required for surface soil temperature and moisture measurements to be spatially independent at the 1 hectare scale during site characterization (capped at approximately 40 m due to logistical constraints). Soil plots were microsited as necessary to avoid obstacles (e.g., boulders, streams, and paths) and more compact plot layouts were used at small sites. Soil temperature is measured at up to nine depths within each plot, with the mid-point of the shallowest sensors at approximately 2, 6, 16, and 26 cm. Depths for deeper sensors vary among sites and are based on megapit soil horizon data (NEON.DP1.00097) and depth to restrictive feature (see NEON.DOC.003146). Instrumentation: Thermometrics - Climate RTD 100-ohm Probe
DOI: 10.17632/xwj98nb39r.1
title: Mortality data for Japanese oak wilt disease and surrounding forest compositions

description: Japanese oak wilt (Raffaelea quercivora) is a vector-borne disease transmitted by the flying ambrosia beetle, Platypus quercivorus, and causes mass mortality in the fagaceous species of Japan. The data include the mortality status of 1089 Quercus crispula and 846 Quercus serrata trees and surrounding forest conditions in 365 study plots in Tsuruoka city, Yamagata prefecture. Locations of study plots are shown in “gps_points.csv” and raw observation data are shown in “trees.csv”. 1) viability status (dead/alive), 2) basal area, and 3) species compositions of stands around the tree for individuals of Q. crispula and Q. serrata in “data.csv” were calculated using field observed data. Landscape metrics around the tree are also shown in “data.csv”. Correspondence between vegetation class of original vegetation maps and that of a simplified vegetation map of the study region is shown in “vegetation_maps.csv”.
DOI: 10.21409/hal-01636628
title: Actes du Colloque Jeu vidéo et santé psychosociale: Thanatos, machine et jeux vidéo. Pour une approche lacanienne du vidéoludique

description: Si pour les politiques de santé la question de l'addiction des jeux vidéo peut-être cruciale en revanche la psychanalyse se porte plus vers les possibilités que les jeux vidéo fassent symptôme. Il ne va pas de soi, pour le psychanalyste qui défend le droit au symptôme, au ratage, au game over, que les jeux vidéo puissent faire symptôme. À partir de l'analyse de la psychothérapie analytique d'Emma, nous interrogerons les jeux vidéos par le biais de la question de l'horizon. Il s'agira de retracer la question de la machine dans la psychanalyse, pour montrer qu'au sein de la psychanalyse il existe une théorisation de la machine. Ce qui nous permettra de développer une approche psychanalytique du vidéoludique à partir de la théorie lacanienne, dans laquelle la machine est toujours une machine de mort nécessaire au vivant pour s'inscrire dans la société des hommes. Cette analyse nous mènera à confronter les écrits sur l'horizon du philosophe Martin Heidegger, du logicien Gérard Chazal et des cliniciens de ce que nous appellerons les games studies à la française (Serge Tisseron, Michaël Stora, Yann Leroux, Thomas Gaon, etc.).
description: The problem of game addiction may be critical for health policies, but psychoanalysis is more interested by the video game possibilities to make symptom. For psychoanalyst who defends the right to the symptom, to the game over, it is not an acknowledgment that video games can make symptom. From the analysis of Emma's analytical psychotherapy, one will analyze video games.
DOI: 10.5281/zenodo.5849058
title: Artisanal and farmer bread making practices differently shape fungal species community composition in French sourdoughs

description: Datasets describing the fungal species diversity, microbial density and acidity of French sourdoughs, phenotypic variation of Kazachstania bulderi and Kazachstania humilis strains as well as the diversity of bread-making practices of 40 bakers and farmers-bakers.The data were collected, analyzed, and reported within the following publication : Elisa Michel, Estelle Masson, Sandrine Bubbendorf, Léocadie Lapicque, Thibault Nidelet, Diego Segond, Stéphane Guézenec, Thérèse Marlin, Hugo deVillers, Olivier Rué, Bernard Onno, Judith Legrand, Delphine Sicard and the participating bakers: <strong>Artisanal and farmer bread making practices differently shape fungal species community composition in French sourdoughs</strong>. PCI Evol. Biol.
description: This is the second version of the archive with a new dataset with corrected data for bloc effects and a new statistical analysis
DOI: 10.5281/zenodo.6261166
title: Experiments on gravel-sand transitions

description: Primary data underlying and collected during flume experiments presented in two companion papers by Dingle & Venditti. Runs 1-8 are detailed in the first companion paper (test of wash load deposition) and Runs 9-16 are detailed in the second (grain size gap). Details of each flume run are presented on the first 8 tabs, as well as input and final gravel bed/bedload grain size distributions. Subsequent calculations using these data are also shown in the remaining tabs of each file. Descriptions of each run are included on the first page of each Excel file. Experiments were conducted in the River Dynamics Laboratory at Simon Fraser University between 2019-2021 by E. Dingle, and were supported through an NSERC Discovery grant & Accelerator Supplement awarded to J Venditti.
DOI: 10.5281/zenodo.7431842
title: Supplementary materials. Publication "Three-way relationships between gut microbiota, helminth assemblages and bacterial infections in wild rodent populations" by Bouilloud et al.

description: <strong>Supplementary information</strong> <strong>Supplementary Figure S1</strong>. Maps showing the sampling area (left) and localities (right) in France. Forests are indicated in green and water in blue. The four sampling localities are represented with a colored polygon. The arrow indicates the North. <strong>Supplementary Figure S2</strong>. Composition of the gut bacteriota. The relative abundance of six phyla representing 99% of the total composition is represented. Individuals are grouped by sampling localities, which are ordered from North to South. (A) Bar graph shows individual variation in phyla composition (phylum=color). (B) Box and whisker plots represent median and interquartile values for each phylum. Black dots correspond to mean values, and colored dots correspond to individuals. <strong>Supplementary Figure S3</strong>. Variations of alpha diversity with individual factors, for the gut bacteriota (family level), pathogenic bacteria and gastro-intestinal helminths of bank voles. Alpha diversity is estimated using the specific richness (A, B and C) and the Shannon index (D, E and F). In graphs C and F, the blue line corresponds to the linear regression line. <strong>Supplementary Figure S4</strong>. Relationships between the composition of the gut bacteriota, pathogenic bacteria and gastro-intestinal helminth communities: The db-RDA triplot shows the structure of the gut bacteriota at the phylum level and the correlations with the intra-host parasite communities. The arrows correspond to the significant explanatory variables. Each point corresponds to an individual, and the colors correspond to the different sampling localities. <strong>Supplementary Table S1. </strong>Variation of the Firmicutes/Bacteroidetes ratio with localities and individual factors. <strong>Supplementary Table S2. </strong>Alpha diversity metrics and statistics for the gut bacteriota, pathogenic bacteria and helminth communities of bank voles. <strong>Supplementary Table S3. </strong>Beta diversity metrics and statistics for the gut bacteriota, pathogenic bacteria and helminth communities of bank voles
DOI: 10.21343/tsvh-y187
title: Meteorological near-surface observations in the area of Adventdalen, Svalbard, in summer 2022
DOI: 10.5281/zenodo.10117597
title: Supplementary File_Nirmatrelvir_Research Integrity Assessment (Version 2)

description: Supplementary material (Research Integrity Assessment Tool (Version 2)) for the 1st update of the Cochrane Review "Nirmatrelvir combined with ritonavir for preventing and treating COVID-19".
DOI: 10.5281/zenodo.5547908
title: CLDF dataset derived from Key and Comrie's "Intercontinental Dictionary Series" from 2021

description: Cite the source of the dataset as: Key, Mary Ritchie & Comrie, Bernard (eds.) 2021. The Intercontinental Dictionary Series. Leipzig: Max Planck Institute for Evolutionary Anthropology.
DOI: 10.5281/zenodo.7713396
title: Data and code for Bauer et al. (2023) J Appl Ecol

description: Data and code of Bauer et al. (2023) J Appl Ecol
DOI: 10.21343/mfng-6727
title: Wind Lidar Measurements in Adventdalen, Svalbard, 2022
DOI: 10.5257/unido/ind2/2020
title: UNIDO INDSTAT 2 (2020 Edition)

description: INDSTAT2 is the largest industrial statistics database of its kind. Unlike others presented by different classification standards for different time periods, INDSTAT2 provides data by a single classification standard for more than 40 years, which makes it particularly valuable for long-term structural analysis. INDSTAT2 presents data for seven principle indicators (number of establishments, employment, wages and salaries, output, value added, gross fixed capital formation and number of female employees). The value figures are presented in current prices. The database includes the index numbers of industrial production, which show the real growth of the volume of production by 2-digit of ISIC Revision 3.
DOI: 10.1285/i20705948v8n1p84
title: The finite iterative method for calculating the correlation matrix implied by a recursive path model

description: The computation of the implied correlation matrix using a recursive structural equation model without latent variables "Path Analysis" is a crucial step. This can be made by the said Jöreskog' method which requires matrix inversion. This paper presents an alternative method of calculation. The originality of this new method is that it is based on direct calculations for obtaining the explicit expression of the implied correlation matrix in terms of model parameters whatever the complexity of the model.
DOI: 10.17632/hdd84z2g85.1
title: Biochar-water-soil interactions: Implications for soil desiccation cracking behaviors in subtropical regions

description: Tables and figures
DOI: 10.17632/963bbxfx9s.1
title: Safety and stable survival of stem-cell-derived retinal organoid for patients with retinitis pigmentosa. Hirami et al.

description: These data are the deposited supplemental information for the article entitled "Safety and stable survival of stem-cell-derived retinal organoid for patients with retinitis pigmentosa." by Hirami et al. in Cell Stem Cell.
DOI: 10.5281/zenodo.7895951
title: Analysis of the Scalar and Vector Random Coupling Models For a Four Coupled-Core Fiber

description: The files with simulation results for ECOC 20223 submission "Analysis of the Scalar and Vector Random Coupling Models For a Four Coupled-Core Fiber".
"4CCF_eigenvectorsPol" file is the Mathematica code which enables to calculate supermodes (eigenvectors of M(w)) and their propagation constants of 4-coupled-core fiber (4CCF). These results are uploaded to the python notebook "4CCF_modelingECOC" in order to plot them to get Fig. 2 in the paper. "TransferMatrix" is the python file with functions used for modeling, simulation and plotting. It is also uploaded in the python notebook "4CCF_modelingECOC", where all the calculations for figures in the paper are presented.
 
! UPD 25.09.2023: There is an error in the formula of birefringence calculation. It is in the function "CouplingCoefficients" in  "TransferMatrix" file. There the variable "birefringence" has to be calculated according to the formula (19) [A. Ankiewicz, A. Snyder, and X.-H. Zheng, "Coupling between parallel optical fiber cores–critical examination", Journal of Lightwave Technology, vol. 4, no. 9,pp. 1317–1323, 1986]:
(4*U**2*W*spec.k0(W)*spec.kn(2, W_)/(spec.k1(W)*V**4))*((spec.iv(1, W)/spec.k1(W))-(spec.iv(2, W)/spec.k0(W)))
The correct formula gives almost the same result (the difference is 10^-5), but one has to use a correct formula anyway.
! UPD 9.12.2023: I have noticed that in the published version of the code I forgot to change the wavelength range for impulse response calculation. So instead of seeing the nice shape as in the paper you will see resolution limited shape. To solve that just change the range of wavelengths, you can add "wl = [1545e-9, 1548e-9]" in the first cell after "Total power impulse response".
P.s. In case of any questions or suggestions you are welcome to write me an email ekader@chalmers.se
DOI: 10.5281/zenodo.7895952
title: Analysis of the Scalar and Vector Random Coupling Models For a Four Coupled-Core Fiber

description: The files with simulation results for ECOC 20223 submission "Analysis of the Scalar and Vector Random Coupling Models For a Four Coupled-Core Fiber".
"4CCF_eigenvectorsPol" file is the Mathematica code which enables to calculate supermodes (eigenvectors of M(w)) and their propagation constants of 4-coupled-core fiber (4CCF). These results are uploaded to the python notebook "4CCF_modelingECOC" in order to plot them to get Fig. 2 in the paper. "TransferMatrix" is the python file with functions used for modeling, simulation and plotting. It is also uploaded in the python notebook "4CCF_modelingECOC", where all the calculations for figures in the paper are presented.
 
! UPD 25.09.2023: There is an error in the formula of birefringence calculation. It is in the function "CouplingCoefficients" in  "TransferMatrix" file. There the variable "birefringence" has to be calculated according to the formula (19) [A. Ankiewicz, A. Snyder, and X.-H. Zheng, "Coupling between parallel optical fiber cores–critical examination", Journal of Lightwave Technology, vol. 4, no. 9,pp. 1317–1323, 1986]:
(4*U**2*W*spec.k0(W)*spec.kn(2, W_)/(spec.k1(W)*V**4))*((spec.iv(1, W)/spec.k1(W))-(spec.iv(2, W)/spec.k0(W)))
The correct formula gives almost the same result (the difference is 10^-5), but one has to use a correct formula anyway.
! UPD 9.12.2023: I have noticed that in the published version of the code I forgot to change the wavelength range for impulse response calculation. So instead of seeing the nice shape as in the paper you will see resolution limited shape. To solve that just change the range of wavelengths, you can add "wl = [1545e-9, 1548e-9]" in the first cell after "Total power impulse response".
P.s. In case of any questions or suggestions you are welcome to write me an email ekader@chalmers.se
DOI: 10.34943/c84beb7b-0c19-464b-a947-06070a72f67a
title: Endeavour South Current Meter Deployed 2023-07-09

description: The Nortek Aquadopp Current Meter A3L9187 AQD14215 was deployed on 2023-07-09 at Endeavour South. This south section of the Endeavour Hydrothermal Vents includes two moorings to monitor the regional circulation. This device is a Current Meter. Acoustic Current Meters (ACM) measure current speed and direction, using the Doppler Effect. Aquadopp current meters have a sensor head that contains 3 acoustic transducers, a tilt sensor, a temperature sensor and a pressure sensor. The instrument transmits a short pulse of sound, and then listens to its echo to measure the change in pitch or frequency. The change in pitch can determine the velocity of the current. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.21644732.v4
title: Molecular identification of wood-decaying fungi of Armillaria genus widespread in Eastern Siberia and the Far East of Russia using ITS, IGS-1-1 and TEF-1Α genetic markers

description: Areal, location, species, host, source, origin and pathogenicity of Siberian and Far Eastern strains of <em>Armillaria</em> used in the study.
DOI: 10.6084/m9.figshare.24781473
title: snn_exp

description: This repository includes all the experimental code associated with all required data for the paper ``X. Chen and S. Güttel. Fast and exact fixed-radius neighbor search based on sorting, 2023.''
DOI: 10.6084/m9.figshare.24781473.v1
title: snn_exp

description: This repository includes all the experimental code associated with all required data for the paper ``X. Chen and S. Güttel. Fast and exact fixed-radius neighbor search based on sorting, 2023.''
DOI: 10.5281/zenodo.10026286
title: Supporting data and scripts - Recovering short DNA fragments from minerals and marine sediments: a comparative study

description: This is a repo for analysis and plotting of extractions data
description: If you use this data and associated scripts, please cite it as below.
DOI: 10.5281/zenodo.10026446
title: Supporting data and scripts - Recovering short DNA fragments from minerals and marine sediments: a comparative study

description: This repository contains scripts for analysis and plotting of associated datasets
description: If you use this data and associated scripts, please cite it as below.
DOI: 10.5281/zenodo.10026772
title: Supporting data and scripts - Recovering short DNA fragments from minerals and marine sediments: a comparative study

description: This repository contains scripts for analysis and plotting of associated datasets
description: If you use this data and associated scripts, please cite it as below.
DOI: 10.5281/zenodo.10318930
title: NASKAH UAS SEMESTER GASAL 2023-2024

description: NASKAH UAS SEMESTER GASAL 2023-2024
DOI: 10.5281/zenodo.10318929
title: NASKAH UAS SEMESTER GASAL 2023-2024

description: NASKAH UAS SEMESTER GASAL 2023-2024
DOI: 10.6084/m9.figshare.24781506
title: Trunk Kinematics Data

description: This trunk kinematic dataset contains computational modelling and experimental data that were measured by a self-developed wearable sensor called the Inertial measurement cluster (IMC). The sensor directly measures and records the angular velocity and the angular acceleration vector of the rigid body to which it is attached.In general, remote monitoring and evaluation of human motion during daily life require accurate extraction of kinematic quantities of body segments. Current approaches use inertial sensors that require numerical time differentiation to access the angular acceleration vector, a mathematical operation that greatly increases noise in the acceleration value. In this research, we use the IMC to measure the trunk's angular velocity and acceleration vector directly during perturbed locomotion. To demonstrate the accuracy of tracking angular acceleration vectors, we used computational modelling and experimental data. As an application, we showed a framework for automatic assessment of experimental fall initiation and balance recovery responses.
DOI: 10.6084/m9.figshare.21629471
title: SNPs for Zostera marina population genomics

description: 11705 core SNPs
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DOI: 10.34740/kaggle/dsv/7160836
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.34740/kaggle/dsv/7160845
title: UNET Lung Segmentation Weights for Chest X Rays
DOI: 10.34740/kaggle/dsv/7160855
title: Animal DataSet
DOI: 10.6084/m9.figshare.24781605
title: Untitled Item

description: In recent times, the methods used to evaluate gastric ulcer healing worldwide have been based on visual examinations and estimating ulcer dimensions in experimental animals. In this study, the protective effect of rhodanine and 2,4-thiazolidinediones scaffolds compared to esomeprazole was investigated in an ethanol model of stomach ulcers in rats. Pretreatment with experimental treatments or esomeprazole prevented the development of ethanol-induced gastric ulcers. The severity of the lesions and injuries was significantly lower than that of vehicle (10% Tween 80) treated rats. Significant and excellent results were obtained with the compound <b>6</b> group, with inhibition percentage and ulcer area values of 97.8% and 12.8±1.1 mm<sup>2</sup>, respectively. Synthesized compounds <b>2</b>, <b>7</b> and <b>8</b> exhibited inhibition percentages and ulcer areas of 94.3% and 31.2±1.1 mm<sup>2</sup>, 91. 3% and 48.1±0. 8 mm<sup>2</sup>, 89. 5% and 57. 6±1. 2 mm<sup>2</sup>, and 89. 1% and 60.3±0. 8 mm<sup>2</sup>, respectively. These biological outcomes are consistent with the docking studies in which Compounds <b>7</b> and <b>8</b> showed remarkable binding site affinities toward human H+/K+- ATPase α protein (ID: P20648), rat H+/K+- ATPase α protein (ID: P09626), and Na+/K+-ATPase crystal structure (PDB ID:2ZXE) with binding site energies of -10.7, -9.0, and -10.4 (kcal/mol) and -8.7, -8.5, and -8.0 (kcal/mol), respectively.