cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21113695.v1
title: coproporus_ventriculus_zanfona_1.fasta.gz

description: ......
DOI: 10.6084/m9.figshare.21113671.v1
title: metadata

description: Metadata- ITS 16S Assembly Experiment
DOI: 10.6084/m9.figshare.21113701
title: IJGIS_Irma_CodesAndData.zip

description: Code and data for manuscript
DOI: 10.6084/m9.figshare.21113701.v1
title: IJGIS_Irma_CodesAndData.zip

description: Code and data for manuscript
DOI: 10.5281/zenodo.7056364
title: Baseline map of 137Cs inventories in reference soil sites at the continental scales of South America

description: This dataset contains the baseline map of <sup>137</sup>Cs inventories in reference soil sites (Bq m<sup>-2</sup>, decay-corrected to 2020) estimated by Partial Least Square Regression (PLSR) with a spatial resolution of 2 km at the continental scale of South America, as well as the prediction uncertainties of the baseline map (coefficient of variation, %).<br> Details information regarding this dataset can be found in the original publication:<br> Mapping the spatial distribution of global <sup>137</sup>Cs fallout in soils of South America as a baseline for Earth Science studies, Earth-Science Reviews, Volume 214, 2021, 103542, ISSN 0012-8252, https://doi.org/10.1016/j.earscirev.2021.103542.
description: {"references": ["Chaboche, P.-A., Saby, N. P., Laceby, J. P., Minella, J. P., Tiecher, T., Ramon, R., Tassano, M., Cabral, P., Cabrera, M., da Silva, Y. J. A. B. (2021). Mapping the spatial distribution of global 137Cs fallout in soils of South America as a baseline for Earth Science studies. Earth-Science Reviews, 103542."]}
DOI: 10.5281/zenodo.7056363
title: Baseline map of 137Cs inventories in reference soil sites at the continental scales of South America

description: This dataset contains the baseline map of <sup>137</sup>Cs inventories in reference soil sites (Bq m<sup>-2</sup>, decay-corrected to 2020) estimated by Partial Least Square Regression (PLSR) with a spatial resolution of 2 km at the continental scale of South America, as well as the prediction uncertainties of the baseline map (coefficient of variation, %).<br> Details information regarding this dataset can be found in the original publication:<br> Mapping the spatial distribution of global <sup>137</sup>Cs fallout in soils of South America as a baseline for Earth Science studies, Earth-Science Reviews, Volume 214, 2021, 103542, ISSN 0012-8252, https://doi.org/10.1016/j.earscirev.2021.103542.
description: {"references": ["Chaboche, P.-A., Saby, N. P., Laceby, J. P., Minella, J. P., Tiecher, T., Ramon, R., Tassano, M., Cabral, P., Cabrera, M., da Silva, Y. J. A. B. (2021). Mapping the spatial distribution of global 137Cs fallout in soils of South America as a baseline for Earth Science studies. Earth-Science Reviews, 103542."]}
DOI: 10.6084/m9.figshare.21113671.v2
title: metadata

description: Metadata- ITS 16S Assembly Experiment
DOI: 10.6084/m9.figshare.21113704
title: mimaenictus_wilsoni_zanfona_1.fasta.gz

description: .......
DOI: 10.6084/m9.figshare.21113704.v1
title: mimaenictus_wilsoni_zanfona_1.fasta.gz

description: .......
DOI: 10.6084/m9.figshare.21113713
title: platyusa_sonomae_zanfona_1.fasta.gz

description: .......
DOI: 10.6084/m9.figshare.21113713.v1
title: platyusa_sonomae_zanfona_1.fasta.gz

description: .......
DOI: 10.25505/fiz.icsd.cc2d2wds
title: CSD 2207305: Experimental Crystal Structure Determination

description: Related Article: TRINATH MISHRA, RAINER POTTGEN|2022|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21103774
title: Fresh and Aged Beef Electronic Nose Data

description: The characteristics of fresh beef from Brazil, Canada, and Horqin and aged beef stored for two years were collected using an electronic nose.
DOI: 10.5519/qd.iup02lx2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5276563 records)
DOI: 10.6084/m9.figshare.21113761
title: Dataset annotating different features of human cell lines in biological and biomedical research

description: Human cell lines are perhaps the go-to tool for initiating studies in many biological and biomedical research fields. While there are many papers to guide neophytes researchers along the journey, many aspects of cell culture and maintenance remain experiential and require months of training in order to obtain reproducible results. What is perhaps lacking is some foundational understanding of the cell lines used in research. This dataset is a cursory effort in this direction that attempts to summarize the key features of common human cell lines in biological and biomedical research. Features documented include organ of origin, disease model, cell type, and purpose of use. It is hoped that this small dataset will help provide the architecture for researchers interested in biomedical problems to also use a similar concept in building their own database on which more discoveries can be made.
DOI: 10.6084/m9.figshare.21113761.v1
title: Dataset annotating different features of human cell lines in biological and biomedical research

description: Human cell lines are perhaps the go-to tool for initiating studies in many biological and biomedical research fields. While there are many papers to guide neophytes researchers along the journey, many aspects of cell culture and maintenance remain experiential and require months of training in order to obtain reproducible results. What is perhaps lacking is some foundational understanding of the cell lines used in research. This dataset is a cursory effort in this direction that attempts to summarize the key features of common human cell lines in biological and biomedical research. Features documented include organ of origin, disease model, cell type, and purpose of use. It is hoped that this small dataset will help provide the architecture for researchers interested in biomedical problems to also use a similar concept in building their own database on which more discoveries can be made.
DOI: 10.34740/kaggle/dsv/4205629
title: OntoUML/UFO Catalog
DOI: 10.5281/zenodo.5122918
title: Supplementary data of endogenous starter culture and cheese metagenomes

description: The first description of the virome composition in Brazilian artisanal Canastra cheese and the phage-bacterial interactions in this food system. Here you can access the contigs that compose the 16 metagenome-assembled genomes (MAG) explored in paper and their spacers sequences.
DOI: 10.5281/zenodo.5122917
title: Supplementary data of endogenous starter culture and cheese metagenomes

description: The first description of the virome composition in Brazilian artisanal Canastra cheese and the phage-bacterial interactions in this food system. Here you can access the contigs that compose the 16 metagenome-assembled genomes (MAG) explored in paper and their spacers sequences.
DOI: 10.5281/zenodo.7080390
title: Stellar luminosity tracks from Baraffe 1998

description: Stellar luminosity tracks from Baraffe 1998 as compiled by Tim Lichtenberg. Zenodo dataset created for 'showyourwork' integration and automated online paper build
DOI: 10.34740/kaggle/dsv/4205665
title: BBC News
DOI: 10.6084/m9.figshare.21112231.v2
title: Data sets for "Fragility in glassy liquids: A structural approach based on machine learning"

description: All data are in ASCII format.
DOI: 10.6084/m9.figshare.21112231.v3
title: Data sets for "Fragility in glassy liquids: A structural approach based on machine learning"

description: All data are in ASCII format.
DOI: 10.6084/m9.figshare.21113848
title: Pictures of Streptomyces Germination

description: Pictures of experimental results after adding various Streptomyces species to Arabidopsis seeds and tracking germination rates
DOI: 10.6084/m9.figshare.21113848.v1
title: Pictures of Streptomyces Germination

description: Pictures of experimental results after adding various Streptomyces species to Arabidopsis seeds and tracking germination rates
DOI: 10.5439/1025272
title: saszenir

description: ARM Instrument: Shortwave Array Spectroradiometer-Zenith
DOI: 10.5439/1025273
title: saszevis

description: ARM Instrument: Shortwave Array Spectroradiometer-Zenith
DOI: 10.5439/1150264
title: saszefilterbands

description: ARM Instrument: Shortwave Array Spectroradiometer-Zenith
DOI: 10.5281/zenodo.7080421
title: Espectrogramas blanco y negro señales NI-FECG

description: Conjunto de 5000 datos <br> 1000 de cada clase _<br> Ritmo cardiaco normal Bradicardia leve Bradicardia severa Taquicardia leve Taquicardia severa
DOI: 10.5281/zenodo.7080420
title: Espectrogramas blanco y negro señales NI-FECG

description: Conjunto de 5000 datos <br> 1000 de cada clase _<br> Ritmo cardiaco normal Bradicardia leve Bradicardia severa Taquicardia leve Taquicardia severa
DOI: 10.5281/zenodo.4792488
title: Image Dataset for Reconstitution of cargo-induced LC3 lipidation in mammalian selective autophagy

description: Selective autophagy of damaged mitochondria, protein aggregates, and other cargoes is essential for health. Cargo initiates phagophore biogenesis, which entails the conjugation of LC3 to phosphatidylethanolamine. Current models suggest that clustered ubiquitin chains on a cargo trigger a cascade from autophagic cargo receptors through the core complexes ULK1 and class III phosphatidylinositol 3-kinase complex I, WIPI2, and the ATG7, ATG3, and ATG12ATG5-ATG16L1 machinery of LC3 lipidation. This was tested using giant unilamellar vesicles (GUVs), GST-Ub4 as a model cargo, the cargo receptors NDP52, TAX1BP1, and OPTN, and the autophagy core complexes. All three cargo receptors potently stimulated LC3 lipidation on GUVs. NDP52- and TAX1BP1-induced LC3 lipidation required all components, but not ULK1 kinase activity. However, OPTN bypassed the ULK1 requirement. Thus, cargo-dependent stimulation of LC3 lipidation is common to multiple autophagic cargo receptors, yet the details of core complex engagement vary between the different receptors. This dataset contains all the GUV images of the reconstitution assay.
DOI: 10.5281/zenodo.4792489
title: Image Dataset for Reconstitution of cargo-induced LC3 lipidation in mammalian selective autophagy

description: Selective autophagy of damaged mitochondria, protein aggregates, and other cargoes is essential for health. Cargo initiates phagophore biogenesis, which entails the conjugation of LC3 to phosphatidylethanolamine. Current models suggest that clustered ubiquitin chains on a cargo trigger a cascade from autophagic cargo receptors through the core complexes ULK1 and class III phosphatidylinositol 3-kinase complex I, WIPI2, and the ATG7, ATG3, and ATG12ATG5-ATG16L1 machinery of LC3 lipidation. This was tested using giant unilamellar vesicles (GUVs), GST-Ub4 as a model cargo, the cargo receptors NDP52, TAX1BP1, and OPTN, and the autophagy core complexes. All three cargo receptors potently stimulated LC3 lipidation on GUVs. NDP52- and TAX1BP1-induced LC3 lipidation required all components, but not ULK1 kinase activity. However, OPTN bypassed the ULK1 requirement. Thus, cargo-dependent stimulation of LC3 lipidation is common to multiple autophagic cargo receptors, yet the details of core complex engagement vary between the different receptors. This dataset contains all the GUV images of the reconstitution assay.
DOI: 10.6084/m9.figshare.21113851
title: Data of Optimizing the quality of epitaxial Y3Fe5O12 thin films via a two-step post-annealing process

description: Data of Optimizing the quality of epitaxial Y3Fe5O12 thin films via a two-step post-annealing process
DOI: 10.5281/zenodo.7076888
title: Model output dataset used in "Sensitivity of Heavy Convective Precipitation Simulations to Changes in Land-atmosphere Exchange Processes over China"

description: This dataset accompanies the paper by Zhang et al. "Sensitivity of Heavy Convective Precipitation Simulations to Changes in Land-atmosphere Exchange Processes over China". Three heavy precipitation events were modeled using the WRF v3.9 model: (1) The_21_July_Beijing_Rainstorm_Simulation<br> (2) The_30_July_Ningxia_rainstorm_Simulation<br> (3) The_19_June_Jiangxi_rainstorm_Simulation Furthermore, three cases were designed for each heavy precipitation event: (1) control experiment (DEFAULT), using the default M-O option (<em>C<sub>zil</sub></em> ~ 0); (2) constant <em>C<sub>zil</sub></em> (CZIL0.01, CZIL0.05, CZIL0.1, CZIL0.3, CZIL0.5 and CZIL0.8), with <em>C<sub>zil</sub></em> values of 0.01, 0.05, 0.1, 0.3, 0.5, and 0.8; (3) a dynamic canopy-height dependent <em>C<sub>zil</sub></em> (NEWCZIL). Plain Language Summary for this paper:<br> Over recent decades, the frequent occurrence of heavy precipitation events has caused devastating ecological and socioeconomic impacts, such as agriculture losses, infrastructure damage, and casualties. High-resolution atmospheric modeling at a convection-permitting grid spacing (≤4 km) provides valuable applications for predicting heavy precipitation. Precipitation can be strongly affected by the energy and moisture exchanges between land surface and atmosphere. However, the representation of land-atmosphere interactions in atmospheric models and the responses of precipitation to land-atmosphere exchange efficiency remain great uncertainties. This study performed 3-km high-resolution atmospheric modeling with a dynamic vegetation-type-dependent land-atmosphere exchange scheme for three typical heavy precipitation events that occurred over areas with different dominant land-cover types. The results showed that land-atmosphere exchange efficiency mainly affected the precipitation intensity as well as the onset and peak time of precipitation. The dynamic exchange scheme modifies the efficiency of land-atmosphere exchanges to match local land cover conditions and could reproduce well the field observations, especially the intensity and location of the heaviest rainfall which usually serve as the most concerned variable in a major rainstorm event. Our findings show that the dynamical scheme could help achieve more accurate precipitation simulations.
DOI: 10.5281/zenodo.7076887
title: Model output dataset used in "Sensitivity of Heavy Convective Precipitation Simulations to Changes in Land-atmosphere Exchange Processes over China"

description: This dataset accompanies the paper by Zhang et al. "Sensitivity of Heavy Convective Precipitation Simulations to Changes in Land-atmosphere Exchange Processes over China". Three heavy precipitation events were modeled using the WRF v3.9 model: (1) The_21_July_Beijing_Rainstorm_Simulation<br> (2) The_30_July_Ningxia_rainstorm_Simulation<br> (3) The_19_June_Jiangxi_rainstorm_Simulation Furthermore, three cases were designed for each heavy precipitation event: (1) control experiment (DEFAULT), using the default M-O option (<em>C<sub>zil</sub></em> ~ 0); (2) constant <em>C<sub>zil</sub></em> (CZIL0.01, CZIL0.05, CZIL0.1, CZIL0.3, CZIL0.5 and CZIL0.8), with <em>C<sub>zil</sub></em> values of 0.01, 0.05, 0.1, 0.3, 0.5, and 0.8; (3) a dynamic canopy-height dependent <em>C<sub>zil</sub></em> (NEWCZIL). Plain Language Summary for this paper:<br> Over recent decades, the frequent occurrence of heavy precipitation events has caused devastating ecological and socioeconomic impacts, such as agriculture losses, infrastructure damage, and casualties. High-resolution atmospheric modeling at a convection-permitting grid spacing (≤4 km) provides valuable applications for predicting heavy precipitation. Precipitation can be strongly affected by the energy and moisture exchanges between land surface and atmosphere. However, the representation of land-atmosphere interactions in atmospheric models and the responses of precipitation to land-atmosphere exchange efficiency remain great uncertainties. This study performed 3-km high-resolution atmospheric modeling with a dynamic vegetation-type-dependent land-atmosphere exchange scheme for three typical heavy precipitation events that occurred over areas with different dominant land-cover types. The results showed that land-atmosphere exchange efficiency mainly affected the precipitation intensity as well as the onset and peak time of precipitation. The dynamic exchange scheme modifies the efficiency of land-atmosphere exchanges to match local land cover conditions and could reproduce well the field observations, especially the intensity and location of the heaviest rainfall which usually serve as the most concerned variable in a major rainstorm event. Our findings show that the dynamical scheme could help achieve more accurate precipitation simulations.
DOI: 10.57931/1886991
title: mosartwmpy sample input data; 1980 - 1985

description: Sample input data spanning the years 1980-1985 for running the mosartwmpy water routing and management model: https://github.com/IMMM-SFA/mosartwmpy More information is available in the README.
DOI: 10.6084/m9.figshare.20222361
title: FINER: Food Ingredient NER Dataset

description: The FINER dataset is available in the CONLL data format. It is built from recipe text scraped from the Allrecipes website. The dataset contains 181.970 sentences (ingredient phrases) in an IOB2 format tag with five defined entities such as ingredient, product, quantity, unit, and state.
DOI: 10.6084/m9.figshare.20222361.v2
title: FINER (Food Ingredient NER) Dataset

description: The FINER dataset is available in the CONLL data format. It is constructed from the recipe data scraped from the Allrecipes website. The recipe data consists of ingredient entities and their attributes, such as the quantity, unit, and ingredient state in the IOB2 tag, and contains 181.970 ingredient data.
DOI: 10.7799/1887271
title: Lignin Forcefield Source Datafiles

description: Three archives are provided here comprising the development of a CHARMM36-compatible lignin forcefield suitable for use in biomolecular simulations. One archive parameters.zip contains the output topology and parameter files in CHARMM format suitable for use in constructing simulation systems. The remaining two hold the logic of the parameterization featuring scripts that do the optimization including the source for the GPU-accelerated objective function evaluation and target data creation scripts.zip as well as minimal outputs needed to recreate the work datafiles.zip. Due to licensing restrictions Gaussian log files that created the target data are not provided here. Instead only binary-formatted parsed target data as well as the input decks used to create the target data are provided in datafiles.zip. Readme files for individual directories created within the directory structure are contained within scripts.zip.
DOI: 10.7799/1887272
title: WEC-Sim Wave Energy Converter Simulator

description: WEC-Sim (Wave Energy Converter SIMulator) is an open-source wave energy converter (WEC) simulation tool. The code is developed in MATLAB/SIMULINK using the multi-body dynamics solver SimMechanics. WEC-Sim has the ability to model devices that are comprised of rigid bodies, power-take-off systems, and mooring systems. Simulations are performed in the time-domain by solving the governing WEC equations of motion in 6 degrees-of-freedom. The WEC-Sim project is funded by the U.S. Department of Energy's Wind and Water Power Technologies Office and the code development effort is a collaboration between the National Renewable Energy Laboratory (NREL) and Sandia National Laboratories (SNL).
DOI: 10.7799/1887286
title: Metering Best Practices Applied in the National Renewable Energy Laboratory's Research Support Facility: A Primer to the 2011 Measured and Modeled Energy Consumption Datasets

description: Modern buildings are complex energy systems that must be controlled for energy efficiency. The Research Support Facility (RSF) at the National Renewable Energy Laboratory (NREL) has hundreds of controllers -- computers that communicate with the building's various control systems -- to control the building based on tens of thousands of variables and sensor points. These control strategies were designed for the RSF's systems to efficiently support research activities. Many events that affect energy use cannot be reliably predicted, but certain decisions (such as control strategies) must be made ahead of time. NREL researchers modeled the RSF systems to predict how they might perform. They then monitor these systems to understand how they are actually performing and reacting to the dynamic conditions of weather, occupancy, and maintenance.
DOI: 10.25921/s7ph-as43
title: ES60 Water Column Sonar Data Collected During EBS09AL
DOI: 10.18112/openneuro.ds003823.v1.2.1
title: Heart rate variability biofeedback training and emotion regulation
DOI: 10.5281/zenodo.6979149
title: Data for SWIF publication

description: This is a supplementary data for an article submitted to a journal. There are several files, including: <em>Corpus.xml</em> - This is a dataset file for the weakness entry corpus retrieved from the CWE database. <em>corpus-design.csv</em> - This is a dataset file of the ground truth observed by an experienced system analyst. <em>queries.xml</em> - This is an input file listing a list of SSI functional requirements used in the experiments. <em>cdkg.xml</em> - This is the pre-defined cross-domain transferring knowledge graph. <em>SSI-Specific Weakness Justification.xlsx</em> - This is the justification for the determination of SSI-specific weakness, which is the full result of Table 7 in Section 6.3.
DOI: 10.5281/zenodo.7080518
title: Data for SWIF publication

description: This is a supplementary data for an article submitted to a journal. There are several files, including: <em>Corpus.xml</em> - This is a dataset file for the weakness entry corpus retrieved from the CWE database. <em>corpus-design.csv</em> - This is a dataset file of the ground truth observed by an experienced system analyst. <em>queries.xml</em> - This is an input file listing a list of SSI functional requirements used in the experiments. <em>cdkg.xml</em> - This is the pre-defined cross-domain transferring knowledge graph. <em>SSI-Specific Weakness Justification.xlsx</em> - This is the justification for the determination of SSI-specific weakness, which is the full result of Table 7 in Section 6.3. <em>FRTS.pdf</em> - This is a PDF file providing a list of SSI functional requirement template sets that is explained in Section 4.1.
DOI: 10.6084/m9.figshare.21113935.v1
title: BBS data zip file

description: Dataset for BBS analysis. This also contains all folders in the zip file (please refer back to the script for more info)
DOI: 10.6084/m9.figshare.21113935
title: BBS data zip file

description: Dataset for BBS analysis. This also contains all folders in the zip file (please refer back to the script for more info)
DOI: 10.6084/m9.figshare.21113962
title: Communications-Earth-Envt-2022

description: Dataset of Figures 3 and 4 in our paper titled Aqueous alteration of the Vastitas Borealis Formation at the Tianewn-1 landing site
DOI: 10.6084/m9.figshare.20278725
title: DATA

description: The relevant dataset of MarSCoDe data
DOI: 10.6084/m9.figshare.20278725.v2
title: DATA

description: The relevant dataset of MarSCoDe data
DOI: 10.6084/m9.figshare.20278725.v3
title: DATA

description: The relevant dataset of MarSCoDe data
DOI: 10.6084/m9.figshare.21114016
title: Additional file 2 of Comprehensive and scalable quantification of splicing differences with MntJULiP

description: Additional file 2. Source data for figures. Supporting data for Figure 1A,E and Figure 2A,B.
DOI: 10.6084/m9.figshare.21114016.v1
title: Additional file 2 of Comprehensive and scalable quantification of splicing differences with MntJULiP

description: Additional file 2. Source data for figures. Supporting data for Figure 1A,E and Figure 2A,B.