cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3114664.v1
title: PI3K/AKT signaling pathway is essential for survival of induced pluripotent stem cells

description: Apoptosis is a highly conserved biochemical mechanism which is tightly controlled in cells. It contributes to maintenance of tissue homeostasis and normally eliminates highly proliferative cells with malignant properties. Induced pluripotent stem cells (iPSCs) have recently been described with significant functional and morphological similarities to embryonic stem cells. Human iPSCs are of great hope for regenerative medicine due to their broad potential to differentiate into specialized cell types in culture. They may be useful for exploring disease mechanisms and may provide the basis for future cell-based replacement therapies. However, there is only poor insight into iPSCs cell signaling as the regulation of apoptosis. In this study, we focused our attention on the apoptotic response of Alzheimer fibroblast-derived iPSCs and two other Alzheimer free iPSCs to five biologically relevant kinase inhibitors as well as to the death ligand TRAIL. To our knowledge, we are the first to report that the relatively high basal apoptotic rate of iPSCs is strongly suppressed by the pancaspase inhibitor QVD-Oph, thus underlining the dependency on proapoptotic caspase cascades. Furthermore, wortmannin, an inhibitor of phosphoinositid-3 kinase / Akt signaling (PI3K-AKT), dramatically and rapidly induced apoptosis in iPSCs. In contrast, parental fibroblasts as well as iPSC-derived neuronal cells were not responsive. The resulting condensation and fragmentation of DNA and decrease of the membrane potential are typical features of apoptosis. Comparable effects were observed with an AKT inhibitor (MK-2206). Wortmannin resulted in disappearance of phosphorylated AKT and activation of the main effector caspase-3 in iPSCs. These results clearly demonstrate for the first time that PI3K-AKT represents a highly essential survival signaling pathway in iPSCs. The findings provide improved understanding on the underlying mechanisms of apoptosis regulation in iPSCs.
DOI: 10.60893/figshare.apl.26363887.v1
title: Supplemental materials

description: The supplementary materials for the fabrication of metal wire above polyimide substrate, schematical diagram of gold atoms penetrating into SiO2 layer, sample fabrication processes for XPS and EDS measurement, I-V characterization of the nanoelectrodes fabricated by EBL on different substrates, and so on.
DOI: 10.17632/4ts6wf2f76
title: Data for: Cross Currency Swap Theory & Practice - An Illustrated Step-by-Step Guide of How to Price Cross Currency Swaps and Calculate the Basis Spread

description: Cross Currency Swap Excel Pricing workbook with Market Data.
DOI: 10.17632/9djg7w3txs
title: Data for: Multi-Step Wind Speed Forecasting based on Hybrid Multi-Stage Decomposition Model and Long Short-Term Memory Neural Network

description: Wind speed times series related to 10min sampling from 02/jan /2019 up to 05/jan/2019. Also there is daily sampled average wind speed data related to 01/nov/2018 up to 31/jan/2019. The wind speed time series are related to Guanambi city, on Bahia State, Brazil.
DOI: 10.6084/m9.figshare.106399.v7
title: Altmetric Fieldwork: The 30 Most-mentioned Humanities Articles (9 January 2013)

description: The data shared here was obtained with the Altmetric Explorer and was used as the basis of a blog post by Ernesto Priego at the Altmetric blog.
The complete dataset is based on an Altmetric Explorer Report updated on Wednesday 9 January 2013, including papers with the keyword "humanities" in the title which were mentioned any time on social media at least once.
DOI: 10.6084/m9.figshare.16344837.v1
title: Code and data for: Increasing sensitivity of terrestrial nitrous oxide emissions to precipitation variations

description: This dataset contains python code and datasets generated from the study: Increasing sensitivity of terrestrial nitrous oxide emissions to precipitation variations<b></b> <br>
DOI: 10.6084/m9.figshare.26761831.v1
title: HSI_datasets_for_MSDA.zip

description: HSI datasets for the paper "Masked Self-Distillation Domain Adaptation for Hyperspectral Image Classification" in IEEE TGRS 2024. The code is available at https://github.com/Li-ZK/MSDA-2024
DOI: 10.17632/657n6myt35
title: Supplementary Material For: Informality, Labor Regulation, and the Business Cycle

description: This compressed file contains all the supporting files to replicate tables and figures in our paper. Please refer to the readme.pdf file for further instructions and cite this material accordingly.
DOI: 10.17632/twx7z52btv
title: SofTer Software and Tutorial 

description: SofTer is piece of software that calculates capacitive deionization (CDI) based on a tertiary current distribution. This repository contains the comsol implementation SofTer.mph as well as a 10-minute video tutorial on how to use it.
DOI: 10.6084/m9.figshare.15062373.v3
title: Atomic force microscopy (AFM) based force spectroscopy and magnetic tweezer datasets for the SARS-CoV-2 RBD:ACE2 interaction

description: The HDF5 files contain AFM force-distance unfolding traces together with peak parameters of the curve. The datasets can be analyzed with scripts available at github (https://github.com/magnusbauer/AFM-CoV-2) and are executable directly in google colab (https://colab.research.google.com/github/magnusbauer/AFM-CoV-2/blob/main/AFM_analysis.ipynb).<br><br>The .mat-files contain the magnetic tweezer datasets for the respective figures. In the “Forces” files, the first column indicates the force, the second column indicates the start and the third column the end frame.<br>Extensions and distances are given in nm and a reference bead is subtracted from the extension trajectories to correct for drift.
DOI: 10.17632/fsk9st443z
title: Data for Geochemical cycling of redox sensitive elements Mo, U and V and their response to benthic hypoxia in the Changjiang Estuary

description: Research data about redox sensitive elements Mo, U and V and related parameters in porewater and solid profiles.
DOI: 10.6084/m9.figshare.1021603.v1
title: Data for “Power and Fairness in a Generalized Ultimatum Game”

description: Data used in G.L. Ciampaglia, S. Lozano, D. Helbing; “Power and Fairness in a Generalized Ultimatum Game” (PLoS One 2014).
DOI: 10.6084/m9.figshare.13344884.v1
title: Protein assemblies used in: Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans

description: All protein assemblies, in fasta format, used in this study for phylogenomics and/or mitochondrial metabolism analyses. Fasta headers include the original naming scheme and our abbreviated version as: "&gt;TaxonA__0@OriginalHeader"; "&gt;TaxonA__1@OriginalHeader"; etc.
DOI: 10.6084/m9.figshare.24025977.v1
title: Axiom 450K SNP array for 480 Scots pine individuals. Raw data and array annotation file

description: Breeding populations and range-wide Scots pine individuals genotyped with a 450K screening array developed from whole-genome resequencing.
DOI: 10.6084/m9.figshare.24952746.v1
title: Chemical compositions of the EAFD(wt.%)

description: The XRF of electric furnace arc dust that is from Angang Lianzhong Stainless Steel Corporation (Kwangtung, China).
DOI: 10.6084/m9.figshare.7884827.v1
title: gVCF_HG02816

description: 1000 Genomes gVCF mapped to hs37d5 for HG02816. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/c38gx37h6t
title: Data for: Data on growth performance, proximate composition, and fatty acid content of edible oyster (Crassostrea spp.), farmed on shellstring along Cox's Bazar Coast

description: Data used for preparing graphs and tables are included in this excel file.
DOI: 10.17632/ycppdx6bjx
title: Model 2 Hesitant Fuzzy TOPSIS to supplier selection - Excel

description: This is a product of my master's dissertation "A comparision between hesitant fuzzy TOPSIS mehods in supporting decision-making for supplier selection, 2022" at the Postgraduate Program in Administration at Federal Technological University of Paraná. In my study, two Hesitant Fuzzy mehods were modeled, implemented and compared. This is the model based on the method presented in "WU, Z. et al. Two MAGDM models based on hesitant fuzzy linguistic term sets with possibility distributions: VIKOR and TOPSIS. Information Sciences, v. 473, p. 101-120, 2019."
DOI: 10.6084/m9.figshare.14762613.v1
title: Focus group transcript

description: Focus group transcription
DOI: 10.6084/m9.figshare.16529826.v1
title: Martin et al., 2021_Data_Mechanism_of_Ageing_And_Development.xlsx

description: Data set for our manuscript accepted in Mechanisms of Ageing and Development:<br>https://doi.org/10.1016/j.mad.2021.111562<br>
DOI: 10.6084/m9.figshare.28875605.v3
title: Datasets for Variations in Event-Bed Thickness-Frequency Distributions Near Volcanic Islands: Indicators of Varied Geological Processes

description: The processed datasets that were used for the statistical charts and t-tests in this paper.
DOI: 10.17605/osf.io/byu3s
title: Replication files for "Climate Disasters and Individual Migration Aspirations: Evidence from Senegal and the Gambia"

description: Replication files
DOI: 10.17632/w6zjz63bmf
title: Excel generated New York State's COVID-19 epidemic curve based on the l-i AIR model

description: Using the l-i AIR model, an epidemic curve was generated to fit the daily COVID-19 cases reported from New York State. In the calculation, the parameter l is 4 and i is 10. The initial date for the first infected person who started the COVID-19 transmission in New York State was set on Feb 7, which was 2 days earlier than the initial date set for NYC. This dataset is attached to the paper "A Simple, SIR-like but Individual-Based Epidemic Model: Application in Comparison of COVID-19 in New York City and Wuhan" as Supplementary Material.
DOI: 10.6084/m9.figshare.16726147.v1
title: Research Data for the reseach paper of global carbonate weathering carbon sink model

description: Original figure data for the reseach paper of global carbonate weathering carbon sink model
DOI: 10.6084/m9.figshare.20460030.v1
title: FsQCA and NLP analysis of diaspora tourists' cognitive and affective perceptions of their heritage hometown

description: In our analysis, we used two analysis tools: NVivo and fsQCA. After preprocessing the data with NVivo, FsQCA was used to investigate the interaction of collective gaze and affective and cognitive attributes of tourist perception.
DOI: 10.6084/m9.figshare.27052504.v1
title: DESeq2_tables

description: Tables contain results of differential expression analysis on DRS nanopore datasets and row count matrices.
DOI: 10.6084/m9.figshare.7016141.v1
title: 23 Religiousness.xlsx

description: Data on change in religiosity.<br>
DOI: 10.6084/m9.figshare.12407066.v1
title: Domain Affinity Scores

description: Over the years, several methods have been proposed for the computational PPI prediction with different performance evaluation strategies. While attempting to benchmark performance scores, most of these methods often suffer with ill-treated cross-validation strategies, adhoc selection of positive/negative samples etc. To address these issues, in our proposed multi-level feature based PPI prediction approach <i>JUPPI</i>, using sequence, domain and GO information as features, a refined evaluation strategy has been introduced. During the evaluation process, we first extract high quality negative data using three-stage filtering, and then introduce a pair-input based cross validation strategy with three difficulty levels for test-set predictions. Our proposed evaluation strategy reduces the component-level overlapping issue in test sets. Performance of <i>JUPPI</i> is compared with those of the <i>state-of-the-art</i> approaches in this domain and tested on six independent PPI datasets. In almost all the datasets, <i>JUPPI</i> outperforms the <i>state-of-the-art</i> not only at human proteome level for PPI prediction, but also for prediction of interactors for intrinsic disordered human proteins.
DOI: 10.17632/pxcshrxdtf
title: CSES satellite data

description: The EFD-3 data includes observations of Very Low Frequency electric field. 
Data are stored in h5 format files that include different parameters.
In particular the file of data includes the WORKMODE flag that identifies the starting and ending time of burst mode (WORKMODE = 2) with higher data rate (original waveform is available) and the survey mode (WORKMODE  = 1) with lower data rate (only spectra are available).
Other parameters are: UTC, orbit number, geographic and magnetic latitude and longitude, altitude, etc.
DOI: 10.6084/m9.figshare.24421753.v1
title: Pre and Post teaching survey excel sheet.xlsx

description: Data Set on DRE examination confidence
DOI: 10.6084/m9.figshare.25958764.v1
title: Raw dataset

description: Golden jackal monitoring in Hungary from 1995 until 2021 based on hunting bag data.
DOI: 10.17632/tbb6ggcmgs
title: Modafferi et al. 2025 Garlic-Aphid Data

description: This dataset contains data for physical characterization of garlic EO nano-emulsion, mortality data from toxicological trials on aphid pest, Aphid gossypii, and honeybees, and phytotoxicity trials on pepper plants.
DOI: 10.17632/vk9vs574sk
title: ROCK-sc/10/4025 database

description: A generic global database ROCK/10/4025 is compiled from published data sets, and includes 9 measured intact rock parameters, and a 10th parameter the Hoek-Brown constant mi. The rock database comprises igneous, metamorphic, and sedimentary rocks of 40 various lithologies. The geographical extend of the database covers 23 countries, and expands, across five continents.
DOI: 10.6084/m9.figshare.12336113.v1
title: FUDK100.sav

description: SPSS file of Reaction Times for repeated Same / Different judgements for 225 pairs of 15 faces. Each pair presented simultaneously, in pseudo-random order, with reaction time recorded in milliseconds ; process repeated 100 times.Data collected from four participants (DK, HK, BF, SB). Repeated with facial stimuli in Upright and Inverted mode.DK and HK saw a "Female" series of expression stimuli (the seven Ekman emotion prototypes posed by Ekman-Friesen poser "MO", plus eight "mixed" expressions created by morphing). BF and SB saw a "Male" series of expression stimuli (the seven Ekman emotion prototypes posed by Ekman-Friesen poser "WF", plus eight "mixed" expressions created by morphing).
DOI: 10.6084/m9.figshare.22758269.v3
title: <b>Tree phytochemical diversity and herbivory are higher in the tropics</b>

description: The datasets analyzed in the current study, including the output of the molecular network, sample-sample chemical structural and compositional similarity (entire metabolites and seven different biosynthetic pathways), plot-species-community data, and the phylogenetic tree of 206 tree species.The R material contains scripts to replicate the analyses from the manuscript, including calculating the chemical structural and compositional similarity (CSCS) index between samples, assessing the number of unique chemical compounds for each forest plot across three climatic zones, calculating chemical rarefaction and NMDS, quantifying the phylogenetic signal of PSM across species-level phylogeny, calculating the alpha, and beta (observed and null model) diversity at community-level, exploring the elevational pattern of herbivorous pressure.
DOI: 10.6084/m9.figshare.28004339.v1
title: data

description: data for paper "<b>Characteristics of runoff and sediment transport during flood events in the upper Yangtze River</b><b>,</b><b>China</b><b>, </b><b>in the last 50 years</b>"
DOI: 10.15468/dl.dxpmur
title: Occurrence Download

description: A dataset containing 3560427 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2022-2025"
 ]
}

 The dataset includes 3560427 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013131-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23550183.v1
title: Thematic analysis of articles.xlsx

description: Thematic analysis of an SLR undertaken to determine quality indicators of effective teacher-created summative assessment.
DOI: 10.6084/m9.figshare.28887677.v1
title: Differential alteration of rumen microbial composition in response to 3-nitrooxypropanol supplementation in dairy cattle fed high-grain and high-forage diets

description: While 3-nitrooxypropanol (3-NOP) is known to effectively reduce methane (CH<sub>4</sub>) emissions in ruminants, its impact on rumen microbial communities under different dietary composition remains less understood. This study investigated how different diet compositions with 3-NOP supplementation affected rumen microbial communities in dairy cows. Rumen samples were obtained from two previous studies: a crossover design study with two 3-NOP levels [0 and 130 mg/kg of dry matter (DM)] under a high-grain diet (HG; grain:forage = 60:40, n = 12), and a 3×3 Latin square design study with three 3-NOP levels (0, 68, and 132 mg/kg of DM) under a high-forage diet (HF; grain:forage = 40:60, n = 15). A total of 138 rumen samples (HG: 48 and HF: 90 samples) were subjected to metataxonomic analysis to identify the compositional shifts of rumen microbiota (bacteria, archaea, and protozoa) in response to 3-NOP supplementation. The ruminal bacterial response to 3-NOP was more pronounced under HG diet (11 genera affected) than under HF diet (2 genera affected), with <i>Lachnospiraceae</i> NK3A20 group consistently increased under both diets. This bacterial group showed diet-specific fermentation patterns, correlating with increased molar proportion of butyrate under HF diet and potentially contributing to increased molar proportion of propionate under HG diet through succinate production. Methanogen responses to 3-NOP supplementation were also diet-dependent. Although <i>Methanosphaera</i> <i>sp</i>. increased under both diets, while distinctive changes including contrasting responses between <i>Methanobrevibacter</i> (<i>Mbb</i>). <i>gottschalkii</i> and <i>Mbb</i>. <i>ruminantium </i>under HF diet, reflecting their different metabolic capabilities in substrate utilization for methanogenesis in response to 3-NOP. Notably, ruminal <i>Mbb</i>. <i>gottschalkii</i> (H<sub>2</sub>-dependent) decreased while <i>Mbb</i>. <i>ruminantium</i> (H<sub>2</sub>/formate-dependent) increased under HF diet, suggesting potential adaptation mechanisms to 3-NOP-induced changes in substrate availability. Ruminal protozoal communities remained unaffected under both diets. Further analysis of combined two studies with a batch effect correction approach revealed increases in <i>Lachnospiraceae</i> NK3A20 group, <i>Saccharofermentans</i>, <i>Mbb</i>. <i>ruminantium</i>, and <i>Methanosphaera</i> <i>sp</i>. Group5 and ISO3-F5, and decreases in <i>Mbb</i>. <i>gottschalkii</i> and <i>Methanomassiliicoccaceae</i> Group4 sp. MpT1 under 3-NOP supplementation. These findings demonstrate that 3-NOP has consistent effects on specific microbial taxa regardless of diet composition, and it also has diet-dependent impacts on other members of the rumen microbiota. This knowledge provides valuable insights for optimizing CH<sub>4</sub> mitigation strategies in dairy production systems under different dietary compositions.
DOI: 10.6084/m9.figshare.28981298.v1
title: Replication data for Only a Moment in Time? The Changing Effectiveness of Mass Mobilization on Transitions to Democracy

description: This archive provides access to the raw data and routines in the empirical analyses reported in "Only a Moment in Time? The Changing Effectiveness of Mass Mobilization on Transitions to Democracy"All the data used are from fully open sources. A full replication archive will be made available on publication of the article
DOI: 10.17632/tz8hgf9stn
title: Data for Long–term application of agricultural amendments regulate the assembly of different bacterial sub–communities and growth of multi–species biofilms in paddy soils

description: High-throughput sequencing of bacteria.
DOI: 10.6084/m9.figshare.19144454.v1
title: Supplementary Material for: Efficacy of Combined Vitrectomy with Intravitreal Corticosteroid Injection for Idiopathic Epiretinal Membrane Removal on Anatomical and Functional Outcomes: A Meta-analysis

description: Background: Macular edema can be a cause of visual loss in eyes undergoing vitrectomy with epiretinal membrane(ERM) peeling. Objective: To evaluate the efficacy of combined vitrectomy with intravitreal corticosteroid injection for ERM. Methods: We conducted a systematic literature review by searching PubMed, Embase, and Medline up to December 2020 for studies that evaluated the effect of intravitreal corticosteroid injection during vitrectomy for ERM. Follow-up data on postoperative best-corrected visual acuity (BCVA) and central macular thickness (CMT) were collected and pooled using the standard mean deviation (SMD) with the corresponding 95% confidence interval (CI). Heterogeneity was statistically quantified using I2 statistics, and a meta-analysis was performed using a random-effects model. Results: Eight studies provided data on a total sample of 443 eyes. The meta-analysis revealed that concomitant intravitreal corticosteroid administration during vitrectomy contributed to a significant reduction in CMT than vitrectomy alone at 3 months after operation (pooled SMD = −0.353; 95% CI, −0.594 to −0.111; p = 0.004). However, between the two groups, no significant difference was found in CMT reduction at 1 and 6 months after operation and in postoperative BCVA improvement at 1, 3, and 6 months after operation. Conclusion: Combined treatment with vitrectomy and intravitreal corticosteroid injection may accelerate CMT reduction 3 months after ERM surgery. However, it did not result in a significant change in CMT and BCVA compared with vitrectomy alone at the end of follow-up.
DOI: 10.6084/m9.figshare.26409289.v2
title: Data for alkalinity pumping from culture experiments and field observations

description: This dataset was generated to support the following research paper.The detailed method for measuring data here is provided in the methods section of the following paper.Those who use data here, please consult Professor Kitack Lee (ktl@postech.ac.kr) and cite the following paper.Alkalinity (bicarbonate) Pumping by Coastal Macroalgal Forestsby Chang-Ho Lee<sup>1</sup>, Kitack Lee<sup>1</sup>*, Miok Kim<sup>1</sup>, Ju-Hyoung Kim<sup>2</sup>, Yongyu Zhang<sup>3</sup>, Jin Woo Kang<sup>4</sup>, Im Ho Choi<sup>4</sup>, Ji Chul Oh<sup>4</sup>, Yong-Woo Choi<sup>5</sup>, Jun Ho Kim<sup>4</sup>, Ja-Myung Kim<sup>1</sup>, Kwang Young Kim<sup>6</sup>*Corresponding author:Kitack Lee (ktl@postech.ac.kr)<sup>1</sup>Division of Environmental Science and Engineering, Pohang University of Science and Technology, Pohang, 37673, Korea<sup>2</sup>Department of Aquaculture and Aquatic Science, Kunsan National University, Gunsan 54150, Korea<sup>3</sup>Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China; University of Chinese Academy of Sciences, Beijing 100049, China<sup>4</sup>Blue Carbon Implementation Division, Fisheries Resources Management Department, Korea Fisheries Resources Agency, Busan 46041, Korea<sup>5</sup>Resources Management Branch Division, South Sea Branch, Korea Fisheries Resources Agency, Yeosu 59753, Korea<sup>6</sup>Department of Oceanography, College of Natural Sciences, Chonnam National University, Gwangju 61186, Republic of Korea