cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qf5mmq
title: Occurrence Download

description: A dataset containing 1638601 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "TaxonKey is one of (Apidae, Melittidae, Megachilidae, Halictidae, Colletidae, Andrenidae)",
 "Year 2000-2025"
 ]
}

 The dataset includes 1638601 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000801-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zbgwf
title: Occurrence Download

description: A dataset containing 582171 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insect Species Occurrence Data from Multiple Projects Worldwide with Focus on Bees and Wasps in North America"
 ]
}

 The dataset includes 582171 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001403-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2xu5dm
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Symphyotrichum salignum",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 120 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008614-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/trvcis
title: Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea

description: The Red Sea is a unique marine ecosystem with contrasting gradients of temperature and salinity along its north to south axis. It is an extremely oligotrophic environment that is characterized by perpetual year-round water column stratification, high annual solar irradiation, and negligible riverine and precipitation inputs. In this study, we investigated whether the contemporary environmental conditions shape community assemblages by pyrosequencing 16S rRNA genes of bacteria in surface water samples collected from the northeastern half of this water body. A combined total of 1,855 operational taxonomic units (OTUs) were recovered as free-living and particle-attached bacterioplankton. Here, a few major OTUs affiliated with Cyanobacteria and Proteobacteria accounted for ~93% of all sequences whereas a tail of “rare” OTUs represented most of the diversity. OTUs allied to Surface 1a/b SAR11 clades and Prochlorococcus related to the high light-adapted (HL2) ecotype were the most widespread and predominant sequence types. Interestingly, the frequency of taxa that are typically found in the upper mesopelagic zone was significantly elevated in the northern transects compared to those in the central, presumably as a direct effect of deep convective mixing in the Gulf of Aqaba and waters exchange with the northern Red. Although temperature was the best predictor of species richness across all major lineages, both spatial and environmental distances correlated strongly with genetic distances. Our results suggest that the bacterial diversity of the Red Sea is as high as in other tropical seas and provide evidence for fundamental differences in the biogeography of pelagic communities between the northern and central regions.
DOI: 10.15468/dl.am9teb
title: Occurrence Download

description: A dataset containing 7088 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Symphyotrichum salignum",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7088 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008616-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tz23ag
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Symphyotrichum salignum",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 119 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008615-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntjdt2
title: Occurrence Download

description: A dataset containing 210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Fossil",
 "Country is Indonesia",
 "DatasetKey is The fossil collection (F) of the Muséum national d'Histoire naturelle (MNHN - Paris)",
 "OccurrenceStatus is Present",
 "PublishingOrg is 2cd829bb-b713-433d-99cf-64bef11e5b3e"
 ]
}

 The dataset includes 210 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008613-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/kpd1id
title: MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 16 SCS sediments

description: DNA from 16 SCS sediments have been extracted and amplified by 515F/909R primer pairs (for prokaryotic 16S rRNA gene). The prokaryotic communities of these 16 samples were obtained.
DOI: 10.15468/7xqkfo
title: Ascidian and Seawater Metagenome

description: Diversity, structure and host-specificity of microbial associates in ascidians (tunic tissue).
DOI: 10.15468/pjb8wu
title: deep marine subsurface Raw sequence reads

description: The deep sedimentary biosphere, extending hundreds of meters below the seafloor harbors unexpected diversity of Bacteria, Archaea, and microbial eukaryotes. Little is known about microbial eukaryotes in these habitats, however studies suggest that fungi dominate. Here we compared fungal ribosomal RNA signatures present in sediment core samples from 6 and 95mbsf from Peru Margin site 1229A. Fungal-specific PCR primers were used in this study.
DOI: 10.15468/dl.667hdt
title: Occurrence Download

description: A dataset containing 39456 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gaultheria shallon",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 39456 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008611-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/re7eoi
title: EMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods

description: This study includes experiments from the following five sequencing strategies: 1) Shotgun DNA sequencing; 2) Amplicon sequencing after 18S amplification by PCR using 1391F/EukB primer set. Library were constructed according to Illumina Library protocol without any sizing; 3) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol without any sizing; 4) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol with a sizing step selecting the 450-650 bp fragments; and 5) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol with a sizing step selecting the 650-850 bp fragments.
DOI: 10.15468/dps4r4
title: Microbial diversity in the Tongyeong-Geoje coastal area of Korea

description: Investigate the potential interactions among the bacterial species, phytoplankton, and environmental parameters
DOI: 10.15468/r9si2n
title: Novel Biphenyl Oxidizing Bacteria and Dioxygenase Genes from a Korean Tidal Mudflat

description: Gene-targeted FLX titanium pyrosequencing integrated with 13C-stable isotope probing (SIP) revealed that tidal mudflat sediments harbor for novel aerobic biphenyl degradative bacteria and aromatic ring hydroxylating dioxygenases (ARHD). Known terrestrial biphenyl oxidizing bacteria and dioxygenase genes were rare in 13C-biphenyl enriched bacterial community. Instead, more than 80% of the detected ARHD genes are not in the public databases.
DOI: 10.15468/ebfq72
title: marine Archaea metagenome

description: Vertical profiles of archaeal diversity in water columns
DOI: 10.15468/p3yycd
title: Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum.

description: We collected environmental samples during the second cruise of the project “The Great Southern Coccolithophore Belt” collecting samples in the South Indian Ocean and Southern Ocean; during the RSS James Clark Ross Cruise JCR271 as part of the project on Arctic Ocean Acidification collecting samples in the Arctic; finally we collected two costal samples off the coast of South Africa during algal bloom events. Samples included 16S, 18S amplicons and metagenomic data.
DOI: 10.6084/m9.figshare.30187666
title: Individuals of Sapajus flavius prey on vertebrates and invertebrates in the Caatinga dry forest

description: These records are associated with the events of predation of vertebrates and invertebrates by Endangered blonde capuchin monkeys (Sapajus flavius) in a Caatinga dry forest at Alagoas, northeastern Brazil.
DOI: 10.6084/m9.figshare.30187666.v1
title: Individuals of Sapajus flavius prey on vertebrates and invertebrates in the Caatinga dry forest

description: These records are associated with the events of predation of vertebrates and invertebrates by Endangered blonde capuchin monkeys (Sapajus flavius) in a Caatinga dry forest at Alagoas, northeastern Brazil.
DOI: 10.15468/dl.brahjg
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sphagnum girgensohnii"
 ]
}

 The dataset includes 77 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008617-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nuz46
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Symphyotrichum salignum",
 "Country is Hungary",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008620-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/emv1sx
title: Phaeobacter inhibens host-attached and free-living communities

description: The aim of the study was to investigate the microbial communities succession on the surface of a diatom and the surroundings
DOI: 10.15468/qq7qxv
title: White sea picoplankton Metagenome

description: Phototrophic picoeukaryotes are important constituents of marine ecosystems. The aim of this study was to determine the molecular diversity and community structure of phototrophic picoeukaryotes in the water and ice of the White Sea in different seasons.
DOI: 10.15468/dl.cfarz7
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sphagnum imbricatum"
 ]
}

 The dataset includes 46 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008618-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2msw8
title: Occurrence Download

description: A dataset containing 1080 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Symphyotrichum salignum",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1080 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008619-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngemp3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Symphyotrichum salignum",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008621-250920141307145/datasets/export for details.
DOI: 10.15468/63wsnk
title: Funtonal metagenomic of salt resistance

description: Hypersaline environments are considered some of the most extreme habitats on earth and microorganisms have developed diverse molecular mechanisms of adaptation to withstand these conditions. The present study was aimed at identifying novel genes involved in salt resistance from the microbial communities of brines and the rhizosphere of the halophyte Arthrocnemum from the Es Trenc saltern (Mallorca, Spain). The bacterial and archaeal diversity assessed by pyrosequencing of 16S rRNA gene libraries revealed the presence of microbial communities that are typical in such environments. Metagenomic libraries were constructed with DNA from brine and rhizosphere samples, they were transferred to the osmosensitive strain Escherichia coli MKH13, and screened for salt-resistant clones. As a result, a total of eleven genes that confer salt resistance were identified, some of which encode for well known proteins previously related to osmoadaptation as a glycerol and a proton pump, whereas other genes encode for proteins not previously related to this function as RNA and DNA helicases, an endonuclease III (Nth) and hypothetical proteins of unknown function. Furthermore, four of the retrieved genes were cloned and expressed in Bacillus subtilis and interestingly, three of them exhibited also salt resistance in this bacterium, broadening the spectrum of bacterial species where these genes can operate. This is the first report of salt resistance genes recovered from different metagenomes of a hypersaline environment, which will help to further elucidate novel molecular mechanisms of salt resistance.
DOI: 10.6084/m9.figshare.30186472
title: Mapping individual building heights using spaceborne lidar GEDI

description: We proposed a novel approach for generating building-scale building height samples through integrating Global Ecosystem Dynamics Investigation (GEDI) data and building footprints. Twelve cities at different stages of development were selected as the study area. Our framework outperforms existing products in accuracy stability, alleviating the global scarcity of building-scale height samples.
DOI: 10.6084/m9.figshare.30186472.v1
title: Mapping individual building heights using spaceborne lidar GEDI

description: We proposed a novel approach for generating building-scale building height samples through integrating Global Ecosystem Dynamics Investigation (GEDI) data and building footprints. Twelve cities at different stages of development were selected as the study area. Our framework outperforms existing products in accuracy stability, alleviating the global scarcity of building-scale height samples.
DOI: 10.15468/uoaqwx
title: Zostera Marina Ammonification environmental

description: In the Fall of 2014, Jessica Abbott (from Jay Stachowiczs lab) and Susan Williams performed an ammonification experiment in Bodega Bay, CA. The experiment involved 72 different plots containing either two or six known genotypes of Zostera marina. The rate of ammonification was measured in sediment from these plots at several different time points post field collection. We are working to determine the microbial community composition of this sediment with the goal of identifying which member(s) of the community might be responsible for the ammonification rates observed.
DOI: 10.15468/dl.v8sayu
title: Occurrence Download

description: A dataset containing 875751 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Odonata",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2023",
 "Country is Netherlands"
 ]
}

 The dataset includes 875751 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008578-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhpsus
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sphagnum junghuhnianum"
 ]
}

 The dataset includes 146 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008623-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/79nx3r
title: Soil fungal communities of Chilean temperate rainforests

description: Soil fungal communities of Chilean temperate rainforests were elucidated by Illumina MiSeq sequencing of the ITS2 region.
DOI: 10.15468/dl.ctbbjs
title: Occurrence Download

description: A dataset containing 55937 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Vicia sativa",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 55937 records from 423 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008567-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/jqpksz
title: Time series of Synechococcus diversity at the SOMLIT-ASTAN station

description: The genetic diversity of Synechococcus population in the English Channel off Roscoff was assessed every two weeks by sequencing the high resolution petB gene marker at the long-term coastal observatory SOMLIT-ASTAN station from July 1st 2009 to December 19th 2011.
DOI: 10.34740/kaggle/dsv/13146770
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.7pxqdb
title: Occurrence Download

description: A dataset containing 996482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fungi",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2023",
 "Country is Netherlands"
 ]
}

 The dataset includes 996482 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008565-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/ngwrvb
title: 16S rRNA gene (V2-V3 region) based analysis of soil procaryotic community composition, Alb VIPs 2008

description: Original data comes from a project which takes or took place as part of the DFG priority program "Exploratories for large-scale and long-term functional biodiversity research". The data is stored together with descriptive metadata, in combination called a dataset, in the project repository (https://www.bexis.uni-jena.de). Species information was extracted from that original dataset. The second paragraph is part of the metadata of the original dataset.
In this data file 16S rRNA gene based analysis of forest and grassland soil procaryotic community composition "Schwaebische Alb" is stored.
DOI: 10.25345/c5k35ms8b
title: MassIVE MSV000099261 - Amazonian sediments - Koolen lab
title: Set of samples from sediments of different Amazon water bodies in Brazil. All samples were extracted with the same procedure and analyzed at the same conditions.
DOI: 10.15468/hanly5
title: Comparison of marine sediments from the Beguela upwelling zone

description: Comparing the microbial communities present in the marine sediments off the coast of Namibia and their relationship to phosphogensis.
DOI: 10.15468/dl.frbh4g
title: Occurrence Download

description: A dataset containing 6193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Genista linifolia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 6193 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008624-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/bsj4qg
title: Phytoplankton-derived biopolymers and seasonal bacterial diversity in Fram Strait

description: Here, we investigated seasonal bacterial community composition in context of the bioavailable fraction of dissolved organic carbon (DOC) in the eastern Fram Strait. The dataset is affiliated with the project "Plankton Ecology and Biogeochemistry in a Changing Arctic Ocean" (PEBCAO) and the LTER "FRAM".
DOI: 10.15468/ywfeze
title: Effects of triclosan on bacterial community composition in natural seawater microcosms

description: The main objective of this study was to analyze the impact of triclosan on bacterial communities in seawater microcosms from Looe Key Reef, FL, Keys, USA.
DOI: 10.15468/dl.qx992f
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Symphyotrichum salignum",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 90 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008630-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.