cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28136435
title: Database of Microbial carbon use efficiency and growth rates in soils

description: Using global data of microbial carbon use efficiency (CUE) in soils, we evaluated the influence of mesaurement approaches, biomes, soil properties, and climate on microbial CUE and growth rates.
DOI: 10.6084/m9.figshare.28136435.v1
title: Database of Microbial carbon use efficiency and growth rates in soils

description: Using global data of microbial carbon use efficiency (CUE) in soils, we evaluated the influence of mesaurement approaches, biomes, soil properties, and climate on microbial CUE and growth rates.
DOI: 10.15468/dl.ubyw9c
title: Occurrence Download

description: A dataset containing 352 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera uncia (Schreber, 1775)"
 ]
}

 The dataset includes 352 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061242-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8ffd6
title: Occurrence Download

description: A dataset containing 3066 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección de Crustáceos Marinos (CRUST-IEOCD)"
 ]
}

 The dataset includes 3066 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061243-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28157402
title: 序列 Data.zip

description: 在本研究中，我们采用 HT22 细胞系作为实验模型来研究氧化应激对其基因表达谱的影响。源自小鼠海马神经元的 HT22 细胞系经常用于神经生物学研究，特别是有关神经退行性疾病和氧化应激机制的研究。采用特定方法诱导氧化应激，我们成功地在 HT22 细胞中建立了氧化应激模型。建立该模型后，我们采用高通量测序技术对氧化应激条件下的 HT22 细胞转录组进行了全面分析。本研究的目的有两个：首先，鉴定与氧化应激反应相关的差异表达基因，其次，进一步分析这些基因的功能富集。进行该分析的目的是揭示氧化应激对神经元细胞基因表达的调控机制。
DOI: 10.5517/ccdc.csd.cc285gpm
title: CCDC 2090630: Experimental Crystal Structure Determination

description: Related Article: Jiahui Xu, Shengyong Deng, Peifa Wei|2024|J.Am.Chem.Soc.|146|34176|doi:10.1021/jacs.4c14448
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285gqn
title: CCDC 2090631: Experimental Crystal Structure Determination

description: Related Article: Jiahui Xu, Shengyong Deng, Peifa Wei|2024|J.Am.Chem.Soc.|146|34176|doi:10.1021/jacs.4c14448
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285grp
title: CCDC 2090632: Experimental Crystal Structure Determination

description: Related Article: Jiahui Xu, Shengyong Deng, Peifa Wei|2024|J.Am.Chem.Soc.|146|34176|doi:10.1021/jacs.4c14448
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285gsq
title: CCDC 2090633: Experimental Crystal Structure Determination

description: Related Article: Jiahui Xu, Shengyong Deng, Peifa Wei|2024|J.Am.Chem.Soc.|146|34176|doi:10.1021/jacs.4c14448
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285gtr
title: CCDC 2090634: Experimental Crystal Structure Determination

description: Related Article: Jiahui Xu, Shengyong Deng, Peifa Wei|2024|J.Am.Chem.Soc.|146|34176|doi:10.1021/jacs.4c14448
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285gvs
title: CCDC 2090635: Experimental Crystal Structure Determination

description: Related Article: Jiahui Xu, Shengyong Deng, Peifa Wei|2024|J.Am.Chem.Soc.|146|34176|doi:10.1021/jacs.4c14448
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.bkb9bm
title: Occurrence Download

description: A dataset containing 18780 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Sitta neumayer Michahelles, 1830"
 ]
}

 The dataset includes 18780 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061244-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2ld1ln
title: CCDC 2394861: Experimental Crystal Structure Determination

description: Related Article: Jiahui Xu, Shengyong Deng, Peifa Wei|2024|J.Am.Chem.Soc.|146|34176|doi:10.1021/jacs.4c14448
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lq49s
title: CCDC 2404555: Experimental Crystal Structure Determination

description: Related Article: H. Ibrahim, S.J. Zamisa, M.D. Bala, P. Ntola, H.B. Friedrich|2024|IUCrData|9|x241138|doi:10.1107/S2414314624011386
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lqmb9
title: CCDC 2405021: Experimental Crystal Structure Determination

description: Related Article: E.M. Njogu, D.O. Juma, S.J. Zamisa, B. Omondi, V.O. Nyamori|2024|IUCrData|9|x241143|doi:10.1107/S241431462401143X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.hhm7vw
title: Occurrence Download

description: A dataset containing 129654 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "Geometry POLYGON((30.41253 36.22982,31.7017 36.67186,31.57924 37.21544,30.65095 37.67902,29.68565 37.11319,29.6091 36.19398,30.41253 36.22982))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2004-2024"
 ]
}

 The dataset includes 129654 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061240-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmzvct
title: Occurrence Download

description: A dataset containing 8233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acheta domesticus (Linnaeus, 1758)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8233 records from 214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061248-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywnw8j
title: Occurrence Download

description: A dataset containing 56373 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is Cantharellus cibarius Fr.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 56373 records from 353 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061247-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z59gwk
title: Occurrence Download

description: A dataset containing 1842 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acrotylus patruelis (Herrich-Schäffer, 1838)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1842 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061250-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f2g952
title: Occurrence Download

description: A dataset containing 211 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Pterocarpus santalinus L.f., Pterocarpus santalinus Blanco)"
 ]
}

 The dataset includes 211 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061251-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28163618
title: materials

description: Chemistry
DOI: 10.6084/m9.figshare.28163618.v1
title: materials

description: Chemistry
DOI: 10.18452/24149.3
title: Mapping des Gemeinsamen Vokabulars für Publikations- und Dokumenttypen zum KDSF

description: Im Rahmen der Überarbeitung des Gemeinsamen Vokabulars hat eine gemeinsame Arbeitsgruppe aus Mitgliedern der DINI-Arbeitsgruppen „Elektronisches Publizieren“ und „Forschungsinformationssysteme“ einen Vorschlag für ein Mapping der Publikationstypen des „Kerndatensatz Forschung – Standard für Forschungsinformation in Deutschland“ auf das überarbeitete „Gemeinsame Vokabular für Publikations- und Dokumenttypen“ erarbeitet.
DOI: 10.6084/m9.figshare.27101466
title: Prognostic value of CMR-derived extracellular volume in AL amyloidosis: a multicenter study

description: This study aimed to assess the prognostic value of cardiac magnetic resonance (CMR) variables and compare them with biological and echocardiographic markers in patients with AL cardiac amyloidosis (CA). We conducted a prospective study across three tertiary centres, where patients underwent clinical examination, blood tests, echocardiography, and CMR. The primary endpoint was all-cause mortality. A total of 176 patients with AL CA were included, with a median age of 68 years (IQR 58-75). According to the 2004 Mayo Clinic staging, 121 patients (69%) were in stage 3. During a median follow-up of 22 months (IQR 8–48), 45 patients died, and 55 were hospitalized for heart failure. Patients who died had higher NT-proBNP and troponin levels, and lower LVEF, cardiac output, and longitudinal strain. Among CMR variables, extracellular volume (ECV) was most strongly associated with all-cause mortality. In multivariate Cox models, including Mayo Clinic staging, ECV ≥ 0.45 was independently associated with mortality (HR 2.36, CI 95% 1.47–5.60) and also with heart failure hospitalizations (HR 4.10, 95%CI 2.15–8.8). ECV is a powerful predictor of outcomes in AL CA, providing additional prognostic value on top of Mayo Clinic staging.
DOI: 10.6084/m9.figshare.27101466.v1
title: Prognostic value of CMR-derived extracellular volume in AL amyloidosis: a multicenter study

description: This study aimed to assess the prognostic value of cardiac magnetic resonance (CMR) variables and compare them with biological and echocardiographic markers in patients with AL cardiac amyloidosis (CA). We conducted a prospective study across three tertiary centres, where patients underwent clinical examination, blood tests, echocardiography, and CMR. The primary endpoint was all-cause mortality. A total of 176 patients with AL CA were included, with a median age of 68 years (IQR 58-75). According to the 2004 Mayo Clinic staging, 121 patients (69%) were in stage 3. During a median follow-up of 22 months (IQR 8–48), 45 patients died, and 55 were hospitalized for heart failure. Patients who died had higher NT-proBNP and troponin levels, and lower LVEF, cardiac output, and longitudinal strain. Among CMR variables, extracellular volume (ECV) was most strongly associated with all-cause mortality. In multivariate Cox models, including Mayo Clinic staging, ECV ≥ 0.45 was independently associated with mortality (HR 2.36, CI 95% 1.47–5.60) and also with heart failure hospitalizations (HR 4.10, 95%CI 2.15–8.8). ECV is a powerful predictor of outcomes in AL CA, providing additional prognostic value on top of Mayo Clinic staging.
DOI: 10.6084/m9.figshare.27188073
title: Neurofilament light chain as a biomarker for hereditary ATTR amyloidosis − correlation between neurofilament light chain and nerve conduction study

description: Neurofilament light chain (NfL) is a biomarker of neuronal injury in hereditary ATTR (ATTRv) amyloidosis. However, the correlation between NfL and nerve conduction study (NCS), the standard test for ATTRv neuropathy, has not been investigated. Elucidate the correlation between NfL and NCS parameters. 227 serum NfL measurements were performed in 45 ATTRv patients, 5 asymptomatic carriers, and 12 controls. Among them, 177 simultaneous analyses of NCS and NfL were conducted in 45 ATTRv patients. NfL levels of symptomatic patients were significantly higher than those of asymptomatic carriers and controls. Serum NfL levels were correlated with NCS parameters, especially compound muscle action potential (CMAP) and sensory nerve action potential (SNAP) amplitudes, indicators of axonal damage. CMAP and/or SNAP amplitudes were undetectable in 9 patients (no-amplitude group) due to advanced neuropathy. NfL levels in the no-amplitude group were significantly higher than those in patients with detectable CMAP/SNAP. NfL levels significantly decreased with patisiran, although no significant changes were observed in CMAP and SNAP. NfL levels are found to be correlated with CMAP/SNAP amplitudes. Compared with NCS, NfL can be a more sensitive biomarker for detecting treatment response and active nerve damage even in patients with advanced neuropathy.
DOI: 10.6084/m9.figshare.27188073.v1
title: Neurofilament light chain as a biomarker for hereditary ATTR amyloidosis − correlation between neurofilament light chain and nerve conduction study

description: Neurofilament light chain (NfL) is a biomarker of neuronal injury in hereditary ATTR (ATTRv) amyloidosis. However, the correlation between NfL and nerve conduction study (NCS), the standard test for ATTRv neuropathy, has not been investigated. Elucidate the correlation between NfL and NCS parameters. 227 serum NfL measurements were performed in 45 ATTRv patients, 5 asymptomatic carriers, and 12 controls. Among them, 177 simultaneous analyses of NCS and NfL were conducted in 45 ATTRv patients. NfL levels of symptomatic patients were significantly higher than those of asymptomatic carriers and controls. Serum NfL levels were correlated with NCS parameters, especially compound muscle action potential (CMAP) and sensory nerve action potential (SNAP) amplitudes, indicators of axonal damage. CMAP and/or SNAP amplitudes were undetectable in 9 patients (no-amplitude group) due to advanced neuropathy. NfL levels in the no-amplitude group were significantly higher than those in patients with detectable CMAP/SNAP. NfL levels significantly decreased with patisiran, although no significant changes were observed in CMAP and SNAP. NfL levels are found to be correlated with CMAP/SNAP amplitudes. Compared with NCS, NfL can be a more sensitive biomarker for detecting treatment response and active nerve damage even in patients with advanced neuropathy.
DOI: 10.15468/dl.v4auj7
title: Occurrence Download

description: A dataset containing 11287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aiolopus thalassinus (Fabricius, 1781)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11287 records from 668 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061253-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26236550
title: Microhabitat and Diet of Common Logperch and Chesapeake Logperch

description: This data is microhabitat use and diet of the Common Logperch (Percina caprodes) and the Chesapeake Logperch (Percina bimaculata). The microhabitat data also includes data for darter species that share streams with the Common Logperch and Chesapeake Logperch.
DOI: 10.6084/m9.figshare.26236550.v1
title: Microhabitat and Diet of Common Logperch and Chesapeake Logperch

description: This data is microhabitat use and diet of the Common Logperch (Percina caprodes) and the Chesapeake Logperch (Percina bimaculata). The microhabitat data also includes data for darter species that share streams with the Common Logperch and Chesapeake Logperch.
DOI: 10.15468/dl.njdauy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GenusKey is Tapirus Brisson, 1762",
 "Country is Colombia",
 "Country is Brazil",
 "Country is Peru",
 "HasCoordinate is true",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019685-240626123714530/datasets/export for details.
DOI: 10.5066/p13l8gau
title: Dike Fields and Macrohabitats of the Lower Missouri River

description: This project summarizes broad, two-dimensional spatial availability of fish habitat across the Lower Missouri River (from its confluence with the Big Sioux River near Sioux City, Iowa downstream to its confluence with the Mississippi River near St. Louis, Missouri). One of the main objectives of the project was to delineate and categorize dike fields, which we define as areas directly downstream from man-made, earthen dike structures. Dike fields represent potential refuge habitats from the fast-flowing navigation channel maintained for boat traffic along the river thalweg. Dike fields were drawn within the boundaries of the main channel of the Missouri River given bankfull conditions and with reference to existing dike structures as defined using spatial polyline datasets maintained by USGS (https://doi.org/10.5066/F7FF3R9D) and the US Army Corps of Engineers (USACE; available upon request). Additionally, as a second objective, we delineated continuous macrohabitats (inside bends, outside bends, and channel crossovers), representing areas with unique hydraulic attributes that could also influence habitat usage by fish. Continuous macrohabitats were delineated based on current standard operating procedures for USACE fish sampling field crews (Welker and Drobish, 2016), with guidance from field crew leaders.
DOI: 10.5281/zenodo.12707864
title: Upload of RTX-KG2.8.4c_labeled_records.csv

description: This is an automated upload of RTX-KG2.8.4c_labeled_records.csv.
DOI: 10.5281/zenodo.12707865
title: Upload of RTX-KG2.8.4c_labeled_records.csv

description: This is an automated upload of RTX-KG2.8.4c_labeled_records.csv.
DOI: 10.15468/dl.ca56tg
title: Occurrence Download

description: A dataset containing 122760 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prunus mahaleb L."
 ]
}

 The dataset includes 122760 records from 1235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019684-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qj6mfv
title: Occurrence Download

description: A dataset containing 4657 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Axis axis (Erxleben, 1777)"
 ]
}

 The dataset includes 4657 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019686-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5vq2sn66
title: MassIVE MSV000095289 - High-throughput cell-based proteomics perturbation: Enzyme Optimization
title: We have developed a high-throughput (HTP) cell-based workflow for the accurate quantification of proteins from approximately 100 samples per day. This bottom-up proteomics workflow automates the processing of cells grown in 96-well plates for liquid-chromatography mass spectrometry (LC-MS) analysis. The HTP system leverages the LE220-plus focused-ultrasonicator system (Covaris) for cell lysis and solubilization in tandem with the Biomek i7 automated liquid handling workstation (Beckman) for subsequent peptide processing prior to LC-MS. AC16 human cardiomyocytes were cultured in a 96-well plate under optimized conditions that was compatible with downstream HTP cell-based assay investigation. Sonication parameters and solubilization buffers were evaluated. An average protein concentration of 0.5 microg/microl was obtained from approximately 38,000 cells and optimal cell lysis was observed in 5 % SDS. SDS-based extraction resulted in more than 70,000 peptides to identify 4,300 proteins, with 75 % of proteins measured at an average coefficient of variation (CV) under 25%. Our HTP system was also adapted to detect proteins from low peptide loads or with short LC-MS acquisition gradients. Our HTP protocol was further evaluated in a cell model of cardiac ischemic reperfusion. Proteomic analysis of differentially expressed proteins (DEPs) demonstrated significant down-regulation in hypoxic state and an influx in reperfused condition, with most upregulated proteins involved in lipid and metabolic metabolism, the main drivers after hypoxic cellular injury. The developed HTP pipeline can be applied to both label free and stable isotope-labeling as well as investigating important key regulators in major cell-based assays, including post-translational modifications. Furthermore, drug targets and cellular perturbations could be rapidly investigated.
DOI: 10.17909/m493-xr06
title: FN Vel