cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28821059
title: Corrected Intensity profiles of LG beams with varying azimuthal index

description: Corrected LG intensity profiles
DOI: 10.15468/dl.yfh5cb
title: Occurrence Download

description: A dataset containing 19929 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Global compendium of Aedes aegypti occurrence"
 ]
}

 The dataset includes 19929 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005014-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kx4ym2
title: Occurrence Download

description: A dataset containing 137770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (North America, South America)",
 "OccurrenceStatus is Present",
 "TaxonKey is Achillea millefolium"
 ]
}

 The dataset includes 137770 records from 515 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065342-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/3f59aj
title: Cryptic and widespread: a recipe for taxonomic misidentification in a freshwater crab species (Decapoda: Potamonautidae: Potamonautes sidneyi) as evident from species delimitation methods

description: This dataset contains the digitized treatments in Plazi based on the original journal article Daniels, Savel R., Busschau, Theo, Gullacksen, Graeme, Marais, Hannes, Gouws, Gavin, Barnes, Aaron (2023): Cryptic and widespread: a recipe for taxonomic misidentification in a freshwater crab species (Decapoda: Potamonautidae: Potamonautes sidneyi) as evident from species delimitation methods. Zoological Journal of the Linnean Society 197 (4): 1005-1033, DOI: 10.1093/zoolinnean/zlac068, URL: http://dx.doi.org/10.1093/zoolinnean/zlac068
DOI: 10.5281/zenodo.13293833
title: DH in the works: taxon_with_higherClassification.tab.zip

description: Just a temporary work area.
DOI: 10.5281/zenodo.13293834
title: DH in the works: taxon_with_higherClassification.tab.zip

description: Just a temporary work area.
DOI: 10.5281/zenodo.10990999
title: The battle between gut bacteria, immune system and Cry1Ac toxin in Plutella xylostella.

description: Research into the interaction between Bacillus thuringiensis (Bt) and pest has primarily focused on the Cry toxin receptor, relatively less attention has been paid towards the role of the gut bacteria, particularly the mechanism on how insect gut bacteria affect its sensitivity to Bt. Addressing this gap could provide valuable insights for pest control strategies. This study analyzed the variances of gut microbiota between Cry1Ac-resistant and sensitive strains of Plutella xylostella, as well as field populations. From their gut microbiota, one strain (Enterobacter asburiae, PxG1) that significantly increased and another strain (Enterobacter hormaechei, PxG15) that significantly decreased the Cry1Ac susceptibility of P. xylostella were isolated and cultured. PxG15 degraded Cry1Ac protoxin and activated the proPO-AS and JNK pathway, which reduced Cry1Ac’s damage to the midgut while limiting the invasion of gut bacteria into the hemolymph. Although PxG1 rapidly activated the proPO-AS, the JNK pathway was activated in a much slower and weaker mode when compared to PxG15, which attenuated the repairing efficiency of midgut under the treatment of Cry1Ac, leading to death resulted from sepsis from the quick invasion of gut bacteria into the hemolymph. This study illustrates the intricate interrelationships among Cry1Ac toxins, the pest's midgut bacteria, and its immune system. Different midgut bacteria exhibited distinct interactions with the Cry1Ac toxin and the immune system, resulting in opposing effects on the virulence of Cry1Ac on pests. These findings provide new insights into the role of gut bacteria in influencing the survival of Lepidoptera pest after exposure to Cry1Ac.
DOI: 10.5281/zenodo.10991000
title: The battle between gut bacteria, immune system and Cry1Ac toxin in Plutella xylostella.
DOI: 10.5281/zenodo.11072259
title: The battle between gut bacteria, immune system and Cry1Ac toxin in Plutella xylostella.
DOI: 10.5281/zenodo.11464260
title: The battle between gut bacteria, immune system and Cry1Ac toxin in Plutella xylostella.

description: As a major pest of cruciferous vegetables and oilseed crops worldwide, Plutella xylostella was the first pest reported to be resistant to Bacillus thuringiensis (Bt) in the field. Research into the mechanisms of Bt resistance in P. xylostella has primarily focused on its Cry toxin receptor. However, in recent years, attention has also been given to the role of its gut bacteria. This study analysed the differences in gut microbiota between Cry1Ac-resistant and sensitive strains of P. xylostella, as well as field populations. From their gut microbiota, a strain (PxG1) that significantly increased and a strain (PxG15) that significantly decreased the Cry1Ac susceptibility of P. xylostella were cultured. PxG15 degrades Cry1Ac protoxin and activates the proPO-AS and the JNK pathway, these effects reducing Cry1Ac damage to the midgut of P. xylostella while providing assistance in delaying the invasion of gut bacteria into the hemolymph. Although PxG1 rapidly activated the proPO-AS, the JNK pathway was activated slower and weaker compared to PxG15. This makes it challenging for the midgut to be efficiently repaired, leading to death caused by sepsis from gut bacteria that quickly invade the hemolymph. This study offers a new reference for comprehending the interactions between Cry1Ac toxin, P. xylostella midgut bacteria, and their immune system, and provides ideas for developing Bt synergistic bacteria. Furthermore, these findings may offer theoretical backing for the creation of novel, environmentally friendly, and effective management strategies for P. xylostella Bt resistance.
DOI: 10.5281/zenodo.14842244
title: The battle between gut bacteria, immune system and Cry1Ac toxin in Plutella xylostella.

description: Research into the interaction between Bacillus thuringiensis (Bt) and pest has primarily focused on the Cry toxin receptor, relatively less attention has been paid towards the role of the gut bacteria, particularly the mechanism on how insect gut bacteria affect its sensitivity to Bt. Addressing this gap could provide valuable insights for pest control strategies. This study analyzed the variances of gut microbiota between Cry1Ac-resistant and sensitive strains of Plutella xylostella, as well as field populations. From their gut microbiota, one strain (Enterobacter asburiae, PxG1) that significantly increased and another strain (Enterobacter hormaechei, PxG15) that significantly decreased the Cry1Ac susceptibility of P. xylostella were isolated and cultured. PxG15 degraded Cry1Ac protoxin and activated the proPO-AS and JNK pathway, which reduced Cry1Ac’s damage to the midgut while limiting the invasion of gut bacteria into the hemolymph. Although PxG1 rapidly activated the proPO-AS, the JNK pathway was activated in a much slower and weaker mode when compared to PxG15, which attenuated the repairing efficiency of midgut under the treatment of Cry1Ac, leading to death resulted from sepsis from the quick invasion of gut bacteria into the hemolymph. This study illustrates the intricate interrelationships among Cry1Ac toxins, the pest's midgut bacteria, and its immune system. Different midgut bacteria exhibited distinct interactions with the Cry1Ac toxin and the immune system, resulting in opposing effects on the virulence of Cry1Ac on pests. These findings provide new insights into the role of gut bacteria in influencing the survival of Lepidoptera pest after exposure to Cry1Ac.
DOI: 10.5281/zenodo.13293763
title: Aves: Aves - body mass

description: body mass

[
![][id]
[id]: http://media.eol.org/content/2014/08/13/15/74568_orig.jpg "Long-billed Curlew (Numenius americanus), 597-689g; photo by Mike Baird, Wikimedia Commons. CC BY"
][eolpath]
[eolpath]: http://eol.org/info/birds
DOI: 10.5281/zenodo.13293764
title: Aves: Aves - body mass

description: body mass

[
![][id]
[id]: http://media.eol.org/content/2014/08/13/15/74568_orig.jpg "Long-billed Curlew (Numenius americanus), 597-689g; photo by Mike Baird, Wikimedia Commons. CC BY"
][eolpath]
[eolpath]: http://eol.org/info/birds
DOI: 10.5281/zenodo.14863248
title: VNIR Reflectance data on clean water/ice

description: This dataset contains spectra from clean lab ice analyzed with an ASD portable field spectrometer with hand probe (350-2500 nm). These data were acquired in December 2022. The ice was crushed and placed on clean black foil (Cinefoil), and spectra were acquired with the probe touching the sample and foil wrapped around to keep out ambient light. RS3 software was used to acquire the spectra, and ViewSpecPro to process it and export. 

We thank Dr. Jessica Weber for access and training on the instrument.
DOI: 10.5281/zenodo.14863249
title: VNIR Reflectance data on clean water/ice

description: This dataset contains spectra from clean lab ice analyzed with an ASD portable field spectrometer with hand probe (350-2500 nm). These data were acquired in December 2022. The ice was crushed and placed on clean black foil (Cinefoil), and spectra were acquired with the probe touching the sample and foil wrapped around to keep out ambient light. RS3 software was used to acquire the spectra, and ViewSpecPro to process it and export. 

We thank Dr. Jessica Weber for access and training on the instrument.
DOI: 10.15468/dl.htszh2
title: Occurrence Download

description: A dataset containing 398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Siganus fuscescens (Houttuyn, 1782)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 398 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001488-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13315831
title: Gymnodiniales: Gymnodiniales Traits

description: Traits about the dinoflagellate Family, Gymnodinialesre-coded trophic terms, June 14, 2019
DOI: 10.5281/zenodo.13315830
title: Gymnodiniales: Gymnodiniales Traits

description: Traits about the dinoflagellate Family, Gymnodinialesre-coded trophic terms, June 14, 2019
DOI: 10.5281/zenodo.13239579
title: EOL Dynamic Hierarchy: Dynamic Hierarchy Version 2.1

description: Currently active Dynamic Hierarchy and archived versions.  For more information, see: https://eol.org/docs/eol-dynamic-hierarchy
The Encyclopedia of Life (EOL, eol.org) aggregates biodiversity information from more than 400 sources and provides access to the data through taxon pages, visual query and application programming interfaces. Scientific names are essential elements of the data integration infrastructure, but their shortcomings as key identifiers are well documented (Patterson et al., 2016). Complex automated workflows and continuous manual curation are required to address idiosyncrasies of source taxonomies, variation in data quality, and conflicting taxonomic opinions. 

To achieve a harmonized taxonomic view of EOL content, names from data sources are mapped to a dynamic reference hierarchy ([see current version here](
https://opendata.eol.org/dataset/tram-807-808-809-810-dh-v1-1/resource/00adb47b-57ed-4f6b-8f66-83bfdb5120e8)) using an algorithm that leverages canonical name strings, hierarchical information (ancestry, descendants), taxonomic ranks, synonym data, and author strings. Names that cannot be associated with a reference taxon are still accessible, but their unmapped status excludes them and any associated content from certain core EOL functions.

For more information about the EOL taxonomy, see [EOL Dynamic Hierarchy](
https://eol.org/docs/eol-dynamic-hierarchy)
DOI: 10.5281/zenodo.13283207
title: EOL Dynamic Hierarchy: Dynamic Hierarchy Version 2.1

description: Currently active Dynamic Hierarchy and archived versions.  For more information, see: https://eol.org/docs/eol-dynamic-hierarchy
The Encyclopedia of Life (EOL, eol.org) aggregates biodiversity information from more than 400 sources and provides access to the data through taxon pages, visual query and application programming interfaces. Scientific names are essential elements of the data integration infrastructure, but their shortcomings as key identifiers are well documented (Patterson et al., 2016). Complex automated workflows and continuous manual curation are required to address idiosyncrasies of source taxonomies, variation in data quality, and conflicting taxonomic opinions. 

To achieve a harmonized taxonomic view of EOL content, names from data sources are mapped to a dynamic reference hierarchy ([see current version here](
https://opendata.eol.org/dataset/tram-807-808-809-810-dh-v1-1/resource/00adb47b-57ed-4f6b-8f66-83bfdb5120e8)) using an algorithm that leverages canonical name strings, hierarchical information (ancestry, descendants), taxonomic ranks, synonym data, and author strings. Names that cannot be associated with a reference taxon are still accessible, but their unmapped status excludes them and any associated content from certain core EOL functions.

For more information about the EOL taxonomy, see [EOL Dynamic Hierarchy](
https://eol.org/docs/eol-dynamic-hierarchy)
DOI: 10.15468/dl.fguq7w
title: Occurrence Download

description: A dataset containing 31086 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycium barbarum L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31086 records from 491 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001489-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14863330
title: 4DHydro_Results_Tetis_Tugela_30sec_daily_exp31_20070101_20221231

description: Modeling results with TETIS software, for Tugela River with a spatial resolution of 30 seconds, and temporal resolution daily. Experiment 31. Forcing "mergedera5gpmsm2a". Calibrating methodology MOSCEM, calibrated variable SM

Includes results for the following variables:



Total evapotranspiration flux in kg m-2 s-1

Discharge flux in m-3 s-1

Volumetric soil moisture content in percentage

Total water storage content in kg m-2
DOI: 10.5281/zenodo.14863331
title: 4DHydro_Results_Tetis_Tugela_30sec_daily_exp31_20070101_20221231

description: Modeling results with TETIS software, for Tugela River with a spatial resolution of 30 seconds, and temporal resolution daily. Experiment 31. Forcing "mergedera5gpmsm2a". Calibrating methodology MOSCEM, calibrated variable SM

Includes results for the following variables:



Total evapotranspiration flux in kg m-2 s-1

Discharge flux in m-3 s-1

Volumetric soil moisture content in percentage

Total water storage content in kg m-2
DOI: 10.5281/zenodo.13322853
title: LifeDesks Archive: eNemo LifeDesk (172) DwCA

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13322854
title: LifeDesks Archive: eNemo LifeDesk (172) DwCA

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13312658
title: Singing Insects of North America: SINA text

description: Singing Insects of North America (SINA) is a unique resource providing extensive content covering the crickets and katydids (and, to a much lesser extent, cicadas) of North America north of Mexico. This content includes audio recordings, images, text, and identification keys. SINA was created and is still maintained by Dr. Thomas J. Walker of the University of Florida, a pioneer and leader in the study of North American crickets and katydids beginning in the late 1950s and continuing into the 21st century. http://entnemdept.ifas.ufl.edu/walker/Buzz/
DOI: 10.5281/zenodo.13312657
title: Singing Insects of North America: SINA text

description: Singing Insects of North America (SINA) is a unique resource providing extensive content covering the crickets and katydids (and, to a much lesser extent, cicadas) of North America north of Mexico. This content includes audio recordings, images, text, and identification keys. SINA was created and is still maintained by Dr. Thomas J. Walker of the University of Florida, a pioneer and leader in the study of North American crickets and katydids beginning in the late 1950s and continuing into the 21st century. http://entnemdept.ifas.ufl.edu/walker/Buzz/
DOI: 10.5281/zenodo.13323186
title: eBird/Clements checklist of birds of the world: Version 6.9

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13323185
title: eBird/Clements checklist of birds of the world: Version 6.9

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13313739
title: PanTHERIA

description: PanTHERIA is a species-level data set compiled for analysis of life history, ecology, and geography of all known extant and recently extinct mammals. PanTHERIA is derived from a database capable of holding multiple geo-referenced values for variables within a species containing 100740 lines of biological data for extant and recently extinct mammalian species, collected over a period of three years by 20 individuals. PanTHERIA also includes spatial databases of mammalian geographic ranges and global climatic and anthropogenic variables. For more information, see:

 

http://esapubs.org/archive/ecol/E090/184/ Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O__Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.
DOI: 10.5281/zenodo.13313740
title: PanTHERIA

description: PanTHERIA is a species-level data set compiled for analysis of life history, ecology, and geography of all known extant and recently extinct mammals. PanTHERIA is derived from a database capable of holding multiple geo-referenced values for variables within a species containing 100740 lines of biological data for extant and recently extinct mammalian species, collected over a period of three years by 20 individuals. PanTHERIA also includes spatial databases of mammalian geographic ranges and global climatic and anthropogenic variables. For more information, see:

 

http://esapubs.org/archive/ecol/E090/184/ Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O__Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.
DOI: 10.5281/zenodo.13305565
title: User Generated Content (EOL v2): user activity collections

description: https://eol-jira.bibalex.org/browse/DATA-1780
Data as of Oct 28, 2018
For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at 
http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13235558
title: User Generated Content (EOL v2): user activity collections

description: https://eol-jira.bibalex.org/browse/DATA-1780
Data as of Oct 28, 2018
For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at 
http://discuss.eol.org/c/eol-services
DOI: 10.15468/dl.a6r9u7
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Siganus spinus (Linnaeus, 1758)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 107 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001490-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14859097
title: Data from Phenocam (PHE) measurements at Heraklion – FORTH (HEFORT) from 2024-01-01 to 2024-12-31 [RAW]

description: Original phenocam images separated into near-infrared (NIR) and visible (VIS).
description: TECHNICAL INFO

Files were submitted and recorded as part of the global Phenocam Network with the site name "forthgr". Access to the "forthgr" phenocam on the global phenocam network through: https://phenocam.nau.edu/webcam/sites/forthgr/

Files are organised in sub-directories per year and month of the year.

LICENSE

Creative Commons Attribution 4.0 International. 

Please read the Phenocam Fair Use Policy.

ATTRIBUTION NOTICE

The [creation and] curation of this work has been funded by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No 855005).

Data were managed and attributed by the PhenoCam Network, which has been supported by the National Science Foundation, the Long-Term Agroecosystem Research (LTAR) network which is supported by the United States Department of Agriculture (USDA), the U.S. Department of Energy, the U.S. Geological Survey, the Northeastern States Research Cooperative, and the USA National Phenology Network. 

DISCLAIMER NOTICE

The use of the work is at the user's own risk. The authors, the involved institutions, and/or the European Research Council accept no liability for material or non-material damage arising from the use or non-use or from the use of incorrect or incomplete information in this work. The authors, the involved institutions, and/or the European Research Council are not responsible for any use that may be made of the information in this work. The legal provisions remain unaffected.

MATERIAL NOTICE

The notices cover data in databases, text and images contained in the work.

MATERIAL URI

Urbisphere project

Global Phenocam Network