cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/anx24-aqc77
title: Legionella_delta-lspGHIJK

description: Legionella pneumophila Philadelphia-1_Lp02. Lacks all the T2SS major and minor pseudopilins.
description: <strong>Tilt Series Date:</strong> 2019-05-18</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-45.0°, 45.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent by Nicholas Cianciotto, Northwestern University. Data collected and processed by Debnath Ghosal.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for this strain (2x concentrated culture, OD~4.8); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-18-67/rawdata/</p>DG8_201905180033.mrc,  Tilt Series (Pixel Size 0.26 nm), 882.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        DG8_201905180033_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
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DOI: 10.15468/dl.wxc2c8
title: Occurrence Download

description: A dataset containing 7904 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lactarius indigo"
 ]
}

 The dataset includes 7904 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007208-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/z5qc5-r5e94
title: Pseudomonas aeruinosa

description: This is from the transposon mutant library of Pseudomonas aeruginosa PAO1. The aim is to check for the presence of PL sub complexes in the absence of FliF protein.
description: <strong>Tilt Series Date:</strong> 2018-10-02</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -9.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Serial EM</p>
<strong>Collaborators and Roles:</strong> I obtained these cells from Dianne Newmann lab (Shannon Park)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The cells were grown overnight at 37 C in LB with 100 ug/ml gentamicin</p>
<strong>Sample Preparation:</strong> Samples from the overnight culture were used to prepare the grids.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-10-02-1/rawdata/</p>Test_Pseudomonas_dfliF_50.mrc,  Tilt Series (Pixel Size 0.37 nm), 2.9 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        Test_Pseudomonas_dfliF_50_full.rec,  Reconstruction (Pixel Size 1.48 nm), 444.5 MB  
        
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DOI: 10.22002/z764e-rcg37
title: Legionella_JV9246

description: Legionella_JV9246: DotF-sfGFP fusion to the wild-type gene on the chromosome (thyA) and ΔdotO.
description: <strong>Tilt Series Date:</strong> 2019-05-28</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -4.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected by Debnath Ghosal and Yuxi Liu.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-28-7/rawdata/</p>JV9246_area1_tomo0045.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.2 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        JV9246_area1_tomo0045_part41_15.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
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DOI: 10.22002/z56ds-etq49
title: Myxococcus xanthus delta-pilT

description: Grid box YWC129
description: <strong>Tilt Series Date:</strong> 2015-04-28</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 2 days in 220 rpm shaking CTT medium at 30 degrees without antibiotics. OD600=0.8</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-04-28-64/rawdata/</p>20150428_YWC129_20066.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        20150428_YWC129_20066_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
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DOI: 10.5517/ccvrgfg
title: CCDC 797116: Experimental Crystal Structure Determination

description: Related Article: Bin Peng, Zhenwei Zhang, Yong Nie, Muwei Ji, Guangming Xia|2010|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1ngfxg
title: CCDC 1533226: Experimental Crystal Structure Determination

description: Related Article: Vanina Mabel Cayón, Sonia Torrico Vallejos, Carlos Omar Della Védova, Oscar Enrique Piro, Gustavo Alberto Echeverría, Mauricio Federico Erben|2019|Trends Org. Chem.|19|43|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1pc9bp
title: CCDC 1559992: Experimental Crystal Structure Determination

description: Related Article: Cédric Lentz, Lionel Marcélis, Ludovic Troian-Gautier, Koen Robeyns, Emilie Cauët, Benjamin Elias |2021|J.Photochem.Photobiol.A:Chem.|405|112957|doi:10.1016/j.jphotochem.2020.112957
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.22002/zhrck-0n704
title: Hippocampal Neurons (DIV 7)

description: Plunge frozen at DIV 7
description: <strong>Tilt Series Date:</strong> 2015-05-03</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Rat Hippocampal Neuron (cultured)</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Xiawei Zhuang, Ruobo Zhou (cultured neurons and STORM imaging)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Plunge frozen at DIV 7. Grids were treated with PDL prior to plating and 3 ul concentrated gold suspended in growth media was added to grid before freezing.</p>
<strong>Sample Preparation:</strong> Grids were plunge froze in a vitrobot at 95 % humidity adn 22 C. They were manually blotted from behind.</p>
description: Files available via S3 at s://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2015-05-03-41/rawdata/</p>050315_hipp_neuron_7div_grid3_hole6_tomo0022.mrc,  Tilt Series (Pixel Size 0.41 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        050315_hipp_neuron_7div_grid3_hole6_tomo0022_full.rec,  Reconstruction (Pixel Size 1.64 nm), 445.4 MB  
        
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DOI: 10.5517/ccdc.csd.cc1pc9cq
title: CCDC 1559993: Experimental Crystal Structure Determination

description: Related Article: Cédric Lentz, Lionel Marcélis, Ludovic Troian-Gautier, Koen Robeyns, Emilie Cauët, Benjamin Elias |2021|J.Photochem.Photobiol.A:Chem.|405|112957|doi:10.1016/j.jphotochem.2020.112957
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.vhccdn
title: Occurrence Download

description: A dataset containing 11133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Colibri"
 ]
}

 The dataset includes 11133 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007213-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/1mqt0-6qj19
title: wt_serum_blotfrombehind

description: This is a sample of wt grown in serum bottle that made nanowires.
description: <strong>Tilt Series Date:</strong> 2015-07-26</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh and Sahand</p>
<strong>Sample Preparation:</strong> The sample was put on the C side (glow discharged side) on the left. The blotting was done from behind on the rt side. Vitrobot was used. All other vitrobot conditions are the same.</p>
  psa2015-07-26-35_slicer17205.jpg: basal bodies-one with flagellum one w/o
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-07-26-35/rawdata/</p>10036.mrc,  Tilt Series (Pixel Size 0.48 nm), 1.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10036_part61_3.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-07-26-35/3dimage_59622/10036_part61_3.rec"
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DOI: 10.5517/ccdc.csd.cc1yyv7z
title: CCDC 1816142: Experimental Crystal Structure Determination

description: Related Article: Gustavo M. Galvão, Iziara F. Florentino, Germán Sanz, Boniek G. Vaz, Luciano M. Lião, José R. Sabino, Carina S. Cardoso, Daiany P.B. da Silva, Elson A. Costa, Andreia L.P. Silva, Artur C.G. da Silva, Marize C. Valadares, Jacqueline A. Leite, Eric de S. Gil, Ricardo Menegatti|2020|Int. Immunopharmacol.|88|106893|doi:10.1016/j.intimp.2020.106893
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5255/ukda-sn-858020
title: Poverty, Inequality, and The International Monetary Fund: How Austerity Hurts The Poor and Widens Inequality, 2021-2024

description: Among the drivers of socio-economic development, this study focuses on an important yet insufficiently understood international-level determinant: the spread of austerity policies to the developing world by the International Monetary Fund (IMF). In offering loans to developing countries in exchange for policy reforms, the IMF typically sets the fiscal parameters within which development occurs. Using an original dataset of IMF-mandated austerity targets, we examine how policy reforms prescribed in IMF programs affect inequality and poverty. 

Our empirical analyses span a panel of up to 79 countries for the period 2002–2018. Using instrumentation techniques, we control for the possibility that these relationships are driven by the IMF imposing harsher austerity measures precisely in countries with more problematic economies. 

Our findings show that stricter austerity is associated with greater income inequality for up to two years, and that this effect is driven by concentrating income to the top 10% of earners while all other deciles lose out. We also find that stricter austerity is associated with higher poverty headcounts and poverty gaps. Taken together, our findings suggest that the IMF neglects the multiple ways its own policy advice contributed to social inequity in the developing world.
DOI: 10.15468/dl.u8kwgj
title: Occurrence Download

description: A dataset containing 1143 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gorilla beringei"
 ]
}

 The dataset includes 1143 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007211-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6vsyeq
title: Occurrence Download

description: A dataset containing 343 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cecropia hololeuca)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 343 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007210-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/2k5ty-dtf56
title: Planktonic cell of Proteus

description: Planktonic cell, PG layer, Proteus mirabillis
description: <strong>Tilt Series Date:</strong> 2016-06-22</p>
<strong>Data Taken By:</strong> Qing Yao</p>
<strong>Species / Specimen:</strong> Proteus mirabilis</p>
<strong>Strain:</strong> HI4320</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFtomo</p>
<strong>Collaborators and Roles:</strong> Douglas B. Weibel lab, Wisconsin-Madison university</p>
<strong>Purification / Growth Conditions / Treatment:</strong> OD=6, 4 ul loading. blotting condition 6s force/ 3s time/ 1s dry time, QUANTIFOIL® – Holey Carbon Films 200 mesh</p>
<strong>Sample Preparation:</strong> single tilt. constant angular increment, step: 1.0. tilt range: (-60, 60). dosage: 195/A2. defocus: -10um. magnification: 22500.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/qya2016-06-22-21/rawdata/</p>newsquare10003.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/qya2016-06-22-21/rawdata/newsquare10003.mrc"
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        newsquare10003.rec,  Reconstruction (Pixel Size 1.92 nm), 622.3 MB  
        
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DOI: 10.5517/ccdc.csd.cc2p1698
title: CSD 2473809: Experimental Crystal Structure Determination

description: Related Article: M. Tokuda, K. Yubuta, T. Shishido, K. Sugiyama|2025|Acta Crystallogr.,Sect.E:Cryst.Commun.|81|748|doi:10.1107/S2056989025006437
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.22002/nydd5-r2s85
title: perfusion_deltacrp

description: This is a sample from the perfusion set up. This is a mutant delta crp which is supposed to make excessive nanowires and has no cytochromes.Every cell imaged was corelated to its FLM image showing a nanowire
description: <strong>Tilt Series Date:</strong> 2015-07-22</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> moh and sahand</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Gold grids glow dischsrged</p>
<strong>Sample Preparation:</strong> The sample was manually plunge frozen. Gold side was glow discharged. Sample was grown on the glow discharged side, and blotted from opposite side before freezing.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-07-22-21/rawdata/</p>perfusiondcrp_p1grid1_atlas70001.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        perfusiondcrp_p1grid1_atlas70001_full.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
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