cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11298788
title: Development and validation of the Stressful Experiences in Transit Questionnaire (SET-Q) and its Short Form (SET-SF)

description: <b>Background</b>: Previous studies have demonstrated that traumatic experiences from countries of origin (so-called pre-migratory factors), as well as stressors in countries of destination (so-called post-migratory factors), are related to the extent of mental health difficulties and psychological well-being of refugees. However, numerous risks that this population is exposed to during transit have so far been neglected. <b>Objective</b>: The aim of this research was to construct and validate a questionnaire for assessing stressful and traumatic experiences in transit as well as its short form, which would at the same time provide information on one’s stressful experiences as well as existing risks that refugees are exposed to on their journey. <b>Method</b>: The study was realized in three phases – item construction, item revision and instrument validation. In the validation phase, a total of 226 refugees completed the Stressful Experiences in Transit Questionnaire (SET-Q), along with Harvard Trauma Questionnaire (HTQ) Parts I and IV, Hopkins Symptom Checklist-25 (HSCL-25) and Beck Depression Inventory – II (BDI-II). <b>Results</b>: Refugees were exposed to an average of 13 stressful events during transit. SET-Q total score was positively correlated with HTQ Part IV Post-Traumatic Stress Disorder (PTSD) and Self-Perception of Functioning scales (SPFS) while the number of stressful experiences with the local population was positively related to BDI-II depression symptoms. Moreover, SET-Q scores were significant predictors of PTSD and SPFS even after traumatic experiences in the country of origin, assessed by HTQ Part I, were taken into account. A short form of the questionnaire (SET-SF) has also been developed. <b>Conclusions</b>: SET-Q is a valid instrument for measuring the scope of stressful experiences refugees have been exposed to during transit, targeted for this population specifically. Furthermore, SET-SF has the potential to assess the same extent of stressful experiences with a significantly reduced number of items. • We developed the Stressful Experiences in Transit Questionnaire (SET-Q) and its short form (SET-SF).• Refugees are exposed to multiple risks during transit.• SET-Q and SET-SF have an incremental prediction of symptomatology measures.
DOI: 10.6084/m9.figshare.11298788.v3
title: Development and validation of the Stressful Experiences in Transit Questionnaire (SET-Q) and its Short Form (SET-SF)

description: <b>Background</b>: Previous studies have demonstrated that traumatic experiences from countries of origin (so-called pre-migratory factors), as well as stressors in countries of destination (so-called post-migratory factors), are related to the extent of mental health difficulties and psychological well-being of refugees. However, numerous risks that this population is exposed to during transit have so far been neglected. <b>Objective</b>: The aim of this research was to construct and validate a questionnaire for assessing stressful and traumatic experiences in transit as well as its short form, which would at the same time provide information on one’s stressful experiences as well as existing risks that refugees are exposed to on their journey. <b>Method</b>: The study was realized in three phases – item construction, item revision and instrument validation. In the validation phase, a total of 226 refugees completed the Stressful Experiences in Transit Questionnaire (SET-Q), along with Harvard Trauma Questionnaire (HTQ) Parts I and IV, Hopkins Symptom Checklist-25 (HSCL-25) and Beck Depression Inventory – II (BDI-II). <b>Results</b>: Refugees were exposed to an average of 13 stressful events during transit. SET-Q total score was positively correlated with HTQ Part IV Post-Traumatic Stress Disorder (PTSD) and Self-Perception of Functioning scales (SPFS) while the number of stressful experiences with the local population was positively related to BDI-II depression symptoms. Moreover, SET-Q scores were significant predictors of PTSD and SPFS even after traumatic experiences in the country of origin, assessed by HTQ Part I, were taken into account. A short form of the questionnaire (SET-SF) has also been developed. <b>Conclusions</b>: SET-Q is a valid instrument for measuring the scope of stressful experiences refugees have been exposed to during transit, targeted for this population specifically. Furthermore, SET-SF has the potential to assess the same extent of stressful experiences with a significantly reduced number of items. • We developed the Stressful Experiences in Transit Questionnaire (SET-Q) and its short form (SET-SF).• Refugees are exposed to multiple risks during transit.• SET-Q and SET-SF have an incremental prediction of symptomatology measures.
DOI: 10.6084/m9.figshare.11298788.v2
title: Development and validation of the Stressful Experiences in Transit Questionnaire (SET-Q) and its Short Form (SET-SF)

description: <b>Background</b>: Previous studies have demonstrated that traumatic experiences from countries of origin (so-called pre-migratory factors), as well as stressors in countries of destination (so-called post-migratory factors), are related to the extent of mental health difficulties and psychological well-being of refugees. However, numerous risks that this population is exposed to during transit have so far been neglected. <b>Objective</b>: The aim of this research was to construct and validate a questionnaire for assessing stressful and traumatic experiences in transit as well as its short form, which would at the same time provide information on one’s stressful experiences as well as existing risks that refugees are exposed to on their journey. <b>Method</b>: The study was realized in three phases – item construction, item revision and instrument validation. In the validation phase, a total of 226 refugees completed the Stressful Experiences in Transit Questionnaire (SET-Q), along with Harvard Trauma Questionnaire (HTQ) Parts I and IV, Hopkins Symptom Checklist-25 (HSCL-25) and Beck Depression Inventory – II (BDI-II). <b>Results</b>: Refugees were exposed to an average of 13 stressful events during transit. SET-Q total score was positively correlated with HTQ Part IV Post-Traumatic Stress Disorder (PTSD) and Self-Perception of Functioning scales (SPFS) while the number of stressful experiences with the local population was positively related to BDI-II depression symptoms. Moreover, SET-Q scores were significant predictors of PTSD and SPFS even after traumatic experiences in the country of origin, assessed by HTQ Part I, were taken into account. A short form of the questionnaire (SET-SF) has also been developed. <b>Conclusions</b>: SET-Q is a valid instrument for measuring the scope of stressful experiences refugees have been exposed to during transit, targeted for this population specifically. Furthermore, SET-SF has the potential to assess the same extent of stressful experiences with a significantly reduced number of items. • We developed the Stressful Experiences in Transit Questionnaire (SET-Q) and its short form (SET-SF).• Refugees are exposed to multiple risks during transit.• SET-Q and SET-SF have an incremental prediction of symptomatology measures.
DOI: 10.57745/ibdp43
title: Live_preprocessing.zip

description: Codes used to combine 2-colors Z-stacks into one 4D dataset Author: Sebastien Herbert, Institut Pasteur
DOI: 10.57745/swjrkj
title: Live dataset tabular and codes.zip

description: Tabular dataset from segmentation for WT and LY (dividing and quiescent cells). Codes to generate plots of figures 2, 3, S3 and S6. Author: Valentin Bonnet, Institut Pasteur.
DOI: 10.57745/yydfht
title: Live Image Processing bunwarpj.zip

description: Codes used to correct apical deformation and invert transformation to compute original apical areas. 1 raw dataset. Author : Minh Son Phan, Institut Pasteur.
DOI: 10.57745/zgqbyq
title: Live logistic regression.zip

description: Tabular dataset and codes for logistic regressions. Author: Felix Cheysson, CNRS.
DOI: 10.5281/zenodo.7515457
title: Missing data in amortized simulation-based neural posterior estimation

description: Supplementary Data to the publication "Missing data in amortized simulation-based neural posterior estimation", Wang et al. 2023.
DOI: 10.5281/zenodo.7515458
title: Missing data in amortized simulation-based neural posterior estimation

description: Supplementary Data to the publication "Missing data in amortized simulation-based neural posterior estimation", Wang et al. 2023.
DOI: 10.21223/qh4efg/hyaxr7
title: 02_Data_Dictionary_Screening_of_diverse_germplasm.tab

description: :unav
DOI: 10.21223/qh4efg/wufzrc
title: 01_Data_Screening of diverse germplasm.tab

description: :unav
DOI: 10.15129/30dc4f64-ae9c-4644-b6fc-eea8c6964666
title: SPARK2066 Project Data

description: Data accrued from the testing of the Acid Base Electrolyser devices (Mk1 and Mk2) along with fundamental electrochemistry measurements in a 3 electrode setup.
DOI: 10.6084/m9.figshare.21837201.v1
title: The virome of bladder tumors arising in people living with HIV

description: Fasta file of anellovirus fragments identified in whole genome and transcriptome sequencing of bladder tumors from patients living with HIV.
DOI: 10.5066/p96r55kq
title: Groundwater-quality data in the Modesto-Turlock-Merced Domestic-Supply Aquifer Study Unit, 2020-2021: Results from the California GAMA Priority Basin Project

description: The U.S. Geological Survey collected groundwater samples from 71 wells used for domestic and small system drinking water supplies in Stanislaus and Merced counties of California during 2020-2021. The wells were sampled for the Modesto-Turlock-Merced Domestic-Supply Aquifer Study Unit of the State Water Resources Control Board Groundwater Ambient Monitoring and Assessment (GAMA) Program Priority Basin Project’s assessment of the quality of groundwater resources used for domestic and small system drinking water supplies. The study unit was defined by the extent of the Modesto, Turlock, and Merced subbasins of the San Joaquin Valley groundwater basin. The study unit was divided into 62 grid cells and one or more domestic or small system well was sampled in 60 of the cells. Groundwater samples from a total of 71 sampled wells were analyzed for field water-quality parameters, volatile organic compounds, pesticides and pesticide degradants, stable isotopes of water, nutrients, major ions and trace elements, hexavalent chromium, perchlorate, per- and polyfluoroalkyl substances (PFAS), and microbial indicators. Groundwater levels were measured in 56 out 71 wells.
DOI: 10.5519/qd.dz2ifqt5
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (64 records)
DOI: 10.25405/data.ncl.21618273
title: Telemetry Data for a Smart Energy Network Digital Twin

description: This dataset consists of the telemetry (measurement) data from 23 substations at the Smart Energy Network Demonstrator at Keele University in the UK. <br> Data is provided on a half-minutely basis (i.e., every 30 seconds) for eight days through 2022, consisting of line-line voltage magnitudes, line currents, total real and reactive power and power factor. <br> Units: - Voltages are in volts (line-line) - Currents in amps - Real power in W - Reactive power in VAr <br> Measurements are made with Siemens Class S Power Quality Instrument and Power Monitoring Device SICAM P850/P855. <br> Folders in telemetry.zip correspond to different dates in the format yyyy_m_dd (e.g., 2022_11_12 is 12th November 2022). <br> Data is provided in the state it was collected (i.e., there has been no data cleaning, and so there are some missing values).
DOI: 10.25405/data.ncl.21618273.v1
title: Telemetry Data for a Smart Energy Network Digital Twin

description: This dataset consists of the telemetry (measurement) data from 23 substations at the Smart Energy Network Demonstrator at Keele University in the UK. <br> Data is provided on a half-minutely basis (i.e., every 30 seconds) for eight days through 2022, consisting of line-line voltage magnitudes, line currents, total real and reactive power and power factor. <br> Units: - Voltages are in volts (line-line) - Currents in amps - Real power in W - Reactive power in VAr <br> Measurements are made with Siemens Class S Power Quality Instrument and Power Monitoring Device SICAM P850/P855. <br> Folders in telemetry.zip correspond to different dates in the format yyyy_m_dd (e.g., 2022_11_12 is 12th November 2022). <br> Data is provided in the state it was collected (i.e., there has been no data cleaning, and so there are some missing values).
DOI: 10.5281/zenodo.7329958
title: Access to Unsaturated Bicyclic Lactones by Overriding Conventional C(sp3)–H Site Selectivity

description: This folder /final_xyz/ contains the DFT-optimized geometries (in .xyz format together with the gas-phase energy, E) accompanying the paper "<strong>Access to Unsaturated Bicyclic Lactones by Overriding Conventional C(<em>sp<sup>3</sup></em>)</strong><strong>-</strong><strong>H Site Selectivity</strong>" Where conformers occur, they are always named from the lowest Gibbs energy to the highest in ascending order from c1 (sometimes omitted), c2, c3, ...
DOI: 10.5281/zenodo.7329959
title: Access to Unsaturated Bicyclic Lactones by Overriding Conventional C(sp3)–H Site Selectivity

description: This folder /final_xyz/ contains the DFT-optimized geometries (in .xyz format together with the gas-phase energy, E) accompanying the paper "<strong>Access to Unsaturated Bicyclic Lactones by Overriding Conventional C(<em>sp<sup>3</sup></em>)</strong><strong>-</strong><strong>H Site Selectivity</strong>" Where conformers occur, they are always named from the lowest Gibbs energy to the highest in ascending order from c1 (sometimes omitted), c2, c3, ...
DOI: 10.5281/zenodo.7516355
title: Access to Unsaturated Bicyclic Lactones by Overriding Conventional C(sp3)–H Site Selectivity

description: This folder /final_xyz/ contains the DFT-optimized geometries (in .xyz format together with the gas-phase energy, E) accompanying the paper "<strong>Access to Unsaturated Bicyclic Lactones by Overriding Conventional C(<em>sp<sup>3</sup></em>)</strong><strong>-</strong><strong>H Site Selectivity</strong>" Where conformers occur, they are always named from the lowest Gibbs energy to the highest in ascending order from c1 (sometimes omitted), c2, c3, ...
DOI: 10.21223/bhiig4/cljghb
title: 02_Data_Dictionary_Screening_of_diverse_germplasm.tab

description: :unav
DOI: 10.21223/bhiig4/lafulz
title: 01_Data_Screening_of_diverse_germplasm_Exp2.tab

description: :unav
DOI: 10.21223/bhiig4
title: Dataset for: Screening of diverse germplasm (especially advanced clones - seed available) for resistance to B. cockerelli - Experiment 2

description: Screening of diverse germplasm (especially advanced clones - seed available) for resistance to B. cockerelli - Experiment 2
DOI: 10.21223/qh4efg
title: Dataset for: Screening of diverse germplasm (especially advanced clones - seed available) for resistance to B. cockerelli - Experiment 1

description: Screening of diverse germplasm (especially advanced clones - seed available) for resistance to Bactericera cockerelli
DOI: 10.35077/act-arm
title: Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 941794256

description: Mouse cortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of mouse cortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: manual tracing
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in mouse cortex, Cell ID 941794256', GeneralModality:'cell morphology', Technique:'PATCH-Seq' SPECIMEN METADATA: LocalID:'941794256.0', Species:'mouse', NCBITaxonomy:'NCBI:txid10090', SampleLocalID:'941794256.0', Locations:'VISp1' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.5066/p9czfvnj
title: Data Release for Holocene Paleohydrology from alpine lake sediment, Emerald Lake, Wasatch Plateau of central Utah, USA

description: Holocene sediments at Emerald Lake in central Utah (3090 m a.s.l), document the paleohydroclimatic history of the western Upper Colorado River headwater region. Multi-proxy analyses of sediment composition, mineralogy, and stable isotopes of carbonate (d18O and d13C) show changes in effective moisture for the past ca. 10,000 years at millennial to decadal timescales. Emerald Lake originated as a shallow closed-basin cirque pond during the early Holocene. By ca. 7000 cal yr BP, higher lake levels and carbonate d18O values indicate rising effective moisture and higher proportions of summer precipitation continued at least until ca. 5500 cal yr BP when a landslide entered the lake margin. Between ca. 4500 and 2400 cal yr BP dry conditions at Emerald Lake envelop the timing of the 'Late Holocene Dry Period' identified at lower elevations. For the past ca. 2500 years, Emerald Lake d18O values were relatively low, indicating wetter conditions and higher snow input (compared to rain) except for dry periods at ca. 2000 cal yr BP and during the Medieval Climate Anomaly at ca. 1000 and ca. 500 cal yr BP. Results provide a long-term perspective on precipitation extremes that influence regional water supplies from a snow-dominated catchment typical of the predominant source region for the Upper Colorado River.
DOI: 10.6084/m9.figshare.21581715
title: Supplementary Material for: Acute and chronic cardiovascular consequences of acute kidney injury: a systematic review and meta-analysis.

description: INTRODUCTIONː We examined whether patients with acute kidney injury (AKI) have a higher risk of developing atrial fibrillation (AF), heart failure (HF), acute coronary syndrome (ACS) and major adverse cardiac events (MACE) in the short- and long-term compared to patients without AKI, and if that risk is related to the severity of AKI. Furthermore, we investigated the influence of a cardiac event following AKI on the risk of all-cause mortality, length of stay in the intensive care unit and in the hospital. METHODS: We included English and Dutch retrospective and prospective cohort studies on adults (≥15 years) with AKI. Studies lacking epidemiological data, studies not using the consensus definitions (RIFLE, AKIN, KDIGO), animal studies and studies on children were excluded. Studies were identified using the PubMed and Embase search engines. The last search was performed on the first of August 2021. For assessment of method quality, NOS (Newcastle-Ottawa Scale) for assessing risk of bias was used for cohort studies and heterogeneity was determined by the I²-statistic. Statistical analysis was performed using the Cochrane Review Manager (RevMan 5.3). The risk ratio (RR) and 95% confidence interval (CI) were calculated using the Mantel-Haenszel test. Results were presented a summary caterpillar plot. RESULTSː We evaluated 14 studies comprising 736 210 patients. AKI was defined according to the RIFLE consensus in 1 article, to the AKIN criteria in 7 and to the KDIGO guidelines in 6. Of the 14 included studies, 4 were prospective and 10 were retrospective. In comparison to patients without AKI, we found that patients with AKI had a 94% increased risk of developing AF in the short term (RR: 1.94, 95% CI 1.35 to 2.79; P = 0.0004). In the long-term, patients with AKI stage 1 had a 59% increased risk of developing HF and a 77% risk of developing ACS. (RR: 1.59, 95% CI 1.07 to 2.34, P = 0.02 and RR: 1.77, 95% CI 1.68 to 1.88, P &lt; 0.00001, respectively). Patients with AKI stage 2 had a 45% increased risk of ACS development (RR: 1.45, 95% CI 1.11 to 1.90, P = 0.006). AKI stage 3 was associated with a 164% increased risk of HF and a 95% increased risk of ACS development. (RR: 2.64, 95% CI 1.71 to 4.08, P &lt; 0.00001 and RR: 1.95, 95% CI 1.35 to 2.82, P = 0.0004, respectively). Analysis of studies not subdividing AKI in groups showed a 74% increased risk of HF, a 12% increased risk of ACS and a 30% increased risk of developing MACE. (RR: 1.74, 95% CI 1.51 to 2.01, P &lt; 0.00001, RR: 1.12, 95% CI 1.07 to 1.17, P &lt; 0.00001 and RR: 1.30, 95% CI 1.25 to 1.35, P &lt; 0.00001, respectively). CONCLUSIONSː Patients who developed AKI have an increased risk of developing AF at short-term follow-up and HF, ACS and MACE beyond 30 days.
DOI: 10.6084/m9.figshare.21581715.v1
title: Supplementary Material for: Acute and chronic cardiovascular consequences of acute kidney injury: a systematic review and meta-analysis.

description: INTRODUCTIONː We examined whether patients with acute kidney injury (AKI) have a higher risk of developing atrial fibrillation (AF), heart failure (HF), acute coronary syndrome (ACS) and major adverse cardiac events (MACE) in the short- and long-term compared to patients without AKI, and if that risk is related to the severity of AKI. Furthermore, we investigated the influence of a cardiac event following AKI on the risk of all-cause mortality, length of stay in the intensive care unit and in the hospital. METHODS: We included English and Dutch retrospective and prospective cohort studies on adults (≥15 years) with AKI. Studies lacking epidemiological data, studies not using the consensus definitions (RIFLE, AKIN, KDIGO), animal studies and studies on children were excluded. Studies were identified using the PubMed and Embase search engines. The last search was performed on the first of August 2021. For assessment of method quality, NOS (Newcastle-Ottawa Scale) for assessing risk of bias was used for cohort studies and heterogeneity was determined by the I²-statistic. Statistical analysis was performed using the Cochrane Review Manager (RevMan 5.3). The risk ratio (RR) and 95% confidence interval (CI) were calculated using the Mantel-Haenszel test. Results were presented a summary caterpillar plot. RESULTSː We evaluated 14 studies comprising 736 210 patients. AKI was defined according to the RIFLE consensus in 1 article, to the AKIN criteria in 7 and to the KDIGO guidelines in 6. Of the 14 included studies, 4 were prospective and 10 were retrospective. In comparison to patients without AKI, we found that patients with AKI had a 94% increased risk of developing AF in the short term (RR: 1.94, 95% CI 1.35 to 2.79; P = 0.0004). In the long-term, patients with AKI stage 1 had a 59% increased risk of developing HF and a 77% risk of developing ACS. (RR: 1.59, 95% CI 1.07 to 2.34, P = 0.02 and RR: 1.77, 95% CI 1.68 to 1.88, P &lt; 0.00001, respectively). Patients with AKI stage 2 had a 45% increased risk of ACS development (RR: 1.45, 95% CI 1.11 to 1.90, P = 0.006). AKI stage 3 was associated with a 164% increased risk of HF and a 95% increased risk of ACS development. (RR: 2.64, 95% CI 1.71 to 4.08, P &lt; 0.00001 and RR: 1.95, 95% CI 1.35 to 2.82, P = 0.0004, respectively). Analysis of studies not subdividing AKI in groups showed a 74% increased risk of HF, a 12% increased risk of ACS and a 30% increased risk of developing MACE. (RR: 1.74, 95% CI 1.51 to 2.01, P &lt; 0.00001, RR: 1.12, 95% CI 1.07 to 1.17, P &lt; 0.00001 and RR: 1.30, 95% CI 1.25 to 1.35, P &lt; 0.00001, respectively). CONCLUSIONSː Patients who developed AKI have an increased risk of developing AF at short-term follow-up and HF, ACS and MACE beyond 30 days.