cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.54tm887/1
title: Bird biodiversity of the Ryukyu archipelago

description: File describing the spatial properties of 32 ryukyu islands/island groups (coordinates and island size), and their bird biodiversity separated by groups. Landbirds refer to those living and foraging on land, whereas seabirds forage at sea (see supporting information). In each case diversity (species richness, functional diversity [MPD based on Wilman et al. trait database] and phylogenetic diversity [MPD based on Jetz et al. phylogeny]) is subset by trophic groups, including all landbird/seabird species, carnivores, insectivores, frugivores, granivores, omnivores and herbivores (which are frugivores and herbivores). Data are observed valeus only (not null distributions based on randomisations). See Methods of Ross et al. for further details.
DOI: 10.5061/dryad.5qg30sd/11
title: R code to analyse porpoise responses to construction activity

description: R code to analyse porpoise responses to pile-driving, acoustic deterrent device (ADD) use and vessel activity. 
Filename = "Graham_BOWL_cMMMP_R_code_to_analyse_porpoise_responses_2019-01-18.R"
DOI: 10.5061/dryad.5qg30sd/13
title: Data on the predicted received sound exposure levels

description: Data on the predicted received sound exposure levels (SEL; dB re 1 µPa^2 s), single pulse for an impact strike with the maximum hammer energy for that piling location, depth averaged for each CPOD sampling sites.
Filename = “Graham_BOWL_cMMMP_Received_noise_levels_18pilinglocations_allCPODlocations_data_2019-05-01.csv”
Six columns = Deployment_number, Turbine, Unweighted_SS_SEL, NOAA_SS_SEL, Southall_SS_SEL, Aud_SS_SEL.
Deployment_number is the CPOD deployment number for that location.
Turbine is the piling location. 
Unweighted_SS_SEL is the unweighted the predicted received sound exposure level (SEL; dB re 1 µPa^2 s), single pulse for an impact strike with the maximum hammer energy for that piling location, depth averaged for that CPOD site.
NOAA_SS_SEL is the predicted SEL frequency weighted by the generalised weighting function for high frequency cetaceans proposed by NOAA (2016 & 2018: see methods in paper for references).
Southall_SS_SEL is the predicted SEL frequency weighted by the high-frequency cetacean weighting function proposed by Southall et al. (2007: see methods in paper for reference).
Aud_SS_SEL is the predicted SEL frequency weighted by a harbour porpoise specific audiogram from Kastelein et al. (2010: see methods in paper for reference).
DOI: 10.5061/dryad.5qg30sd/14
title: Data on porpoise responses (from CPODs) for analyses of responses of porpoises to piling, acoustic deterrent device use and vessel activit

description: Filename = “Graham_BOWL_cMMMP_Porpoise_responses_to_construction_data_2019-05-01.csv”
Twenty-four columns = dep_no, turbine, dph24, dph12, base24, base12, prop24, prop12, resp24_50, resp12_50, location, distance, vessels24_1km, vessels12_1km, vessels24_500m, vessels12_500m, duration, piling_order, ADD, pod, Unweighted_SS_SEL, NOAA_SS_SEL, Southall_SS_SEL, Aud_SS_SEL.
dep_no is the CPOD deployment number. 
turbine is the piling location.
dph24 is the number of detection positive hours in the 24-hour period from the end of piling.
dph12 is the number of detection positive hours in the 12-hour period from the end of piling.
base24 is the number of detection positive hours in the 24-hour baseline period.
base12 is the number of detection positive hours in the 12-hour baseline period.
prop24 is (dph24 – base24)/base24.
prop12 (dph12 – base12)/base12.
resp24_50 is the 24-hour porpoise response coded as 0 or 1: if prop24 &lt;= -0.5, response = 1.
resp12_50 is the 12-hour porpoise response coded as 0 or 1: if prop12 &lt;= -0.5, response = 1.
location is the numeric identifier for the location at which that CPOD was deployed.
distance is the distance to piling (km).
vessels24_1km is the number of AIS vessel detections in the 24-h response period within 1km of the CPOD.
vessels12_1km is the number of AIS vessel detections in the 12-h response period within 1km of the CPOD.
vessels24_500m is the number of AIS vessel detections in the 24-h response period within 500m of the CPOD.
vessels12_500m is the number of AIS vessel detections in the 12-h response period within 500m of the CPOD.
duration is the duration of active piling in hours.
piling_order is the order in which locations were piled, equivalent to the cumulative number of locations piled at the end of piling at that location.
ADD is whether or not ADD mitigation was used prior to piling, coded “Y” (Yes) or “N” (No).
pod is the CPOD number.
Unweighted_SS_SEL, NOAA_SS_SEL, Southall_SS_SEL, Aud_SS_SEL are the predicted received sound exposure levels as above for data file 8.
DOI: 10.5061/dryad.5qg30sd/15
title: Data on predicted porpoise responses for the model of 24-h response with distance

description: Data on predicted porpoise responses for the model (24-h response ~ log(distance)*piling order + no. vessel locations_1km; see Table 1, Model a) used in the R code in the ESM to calculate the number of individuals displaced using behavioural-response curves.
Filename = “Graham_BOWL_cMMMP_bootstrapped_predictions_m8_24_data_2019-05-01.csv”
Six columns = distance, zorder, zvessels_1km, fit, lci, uci
distance is the distance to piling (km).
zorder is the standardised value of piling order (order in which the locations were piled): values were standardised by subtracting the mean piling order and dividing by the standard deviation of the mean.
zvessels_1km is the standardised value of the number of AIS vessel detections in the 24-h response period within 1km of the CPOD: values were standardised by subtracting the mean number of AIS vessel detections and dividing by the standard deviation of the mean.
fit are the predicted values of the probability of response estimated using bootstrapping.
lci are the predicted values of the lower 95 % confidence interval of the probability of response estimated using bootstrapping.
uci are the predicted values of the upper 95 % confidence interval of the probability of response estimated using bootstrapping.
DOI: 10.5061/dryad.5qg30sd/7
title: Data on AIS detections within 500m of CPODs

description: Data on the number of AIS vessel detections within 500m of each CPOD. Raw AIS data for 2017 for the Moray Firth were supplied to BOWL by Astra Paging Ltd., Sliven, Bulgaria. This AIS data consisted of the location (latitude and longitude) of each AIS vessel at 5 minute intervals. These data were processed in R to select only AIS vessel locations within 500 m of each CPOD when the CPOD was operational (i.e. deployed and recording data).
Filename = “Graham_BOWL_cMMMP_5min_boat_withineach_500mCPODbuffer _data_2019-01-18.csv”
Five columns = MMMSI.x, DATE.TIME.x, Deployment.number, BOAT.LATITUDE, BOAT.LONGITUDE.
MMMSI.x is the unique 9 digit vessel identifier.
DATE.TIME.x is the time of the vessel detection.
Deployment.number is the CPOD deployment to which that vessel detection refers.
BOAT.LATITUDE is the latitude in decimal degrees for that vessel detection.
BOAT.LONGITUDE is the longitude in decimal degrees for that vessel detection.
DOI: 10.5061/dryad.7sp252q/1
title: data

description: The net primary production, climate and soil nutrient data
DOI: 10.5061/dryad.83dt5sq/1
title: VanCampernolle et al 2019

description: Folder includes species locality data and current and future environmental data used for Maxent species distribution models.  The 'Calibration fish localities' file includes individual georeferenced species localities used for Maxent model calibration (training).  The 'Validation fish localities' file includes individual georeferenced species localities used for Maxent model validation (testing).  The 'Currrent_environment' folder includes GIS habitat data for Maxent modeling of contemporary species distributions.  The 'Future_environment' folder includes GIS habitat data for Maxent projection of future species distributions.  The 'Future_environment' folder contains subfolders with all Global Climate Model (GCM) scenarios used for future Maxent projections.
DOI: 10.5061/dryad.9883b80/1
title: P. maniculatus functional GO annotations

description: This excel sheet contains functional annotations for the P. maniculatus genome. These were generated using 'Blast2GO' (Gotz et al., 2008) using the full NCBI database.
DOI: 10.5061/dryad.9883b80/2
title: RNAseq sample information

description: This excel sheet specifies the sampling location, sex, and species of the individual RNAseq samples.
DOI: 10.5061/dryad.b3k21db/1
title: Northern Bobwhite movement metrics in relation to rabbit hunting

description: Northern Bobwhite telemetry data gathered in the field via VHF-telemetry. Movement metrics described from the telemetry data were determined through analysis in ArcGIS and package "trajr" in R Statistical Software. Additional information on the attached files are described in the "README" text file.
DOI: 10.5061/dryad.c270ft8/1
title: Plant-hummingbird interaction networks

description: 19 plant-hummingbird interaction networks. If used, please ensure taxonomy is up-to-date and cite Simmons, B. I., Vizentin‐Bugoni, J. , Maruyama, P. K., Cotton, P. A., Marín‐Gómez, O. H., Lara, C. , Rosero‐Lasprilla, L. , Maglianesi, M. A., Ortiz‐Pulido, R. , Rocca, M. A., Rodrigues, L. C., Tinoco, B. , Vasconcelos, M. F., Sazima, M. , González, A. M., Sonne, J. , Rahbek, C. , Dicks, L. V., Dalsgaard, B. and Sutherland, W. J. (2019), Abundance drives broad patterns of generalisation in plant–hummingbird pollination networks. Oikos. doi:10.1111/oik.06104
DOI: 10.5061/dryad.c270ft8/2
title: Species abundances from each of the 19 plant-hummingbird pollination networks

description: If used, please ensure taxonomy is up-to-date and cite Simmons, B. I., Vizentin‐Bugoni, J. , Maruyama, P. K., Cotton, P. A., Marín‐Gómez, O. H., Lara, C. , Rosero‐Lasprilla, L. , Maglianesi, M. A., Ortiz‐Pulido, R. , Rocca, M. A., Rodrigues, L. C., Tinoco, B. , Vasconcelos, M. F., Sazima, M. , González, A. M., Sonne, J. , Rahbek, C. , Dicks, L. V., Dalsgaard, B. and Sutherland, W. J. (2019), Abundance drives broad patterns of generalisation in plant–hummingbird pollination networks. Oikos. doi:10.1111/oik.06104
DOI: 10.5061/dryad.dc4b0t6/1
title: intramenvar_data_for_dryad

description: a sheet containing information on gall sizes in different treatments, and the fates of each gall.
DOI: 10.5061/dryad.fc37vr6/1
title: dataset

description: Excel sheet containing all the data used for the analysis.
DOI: 10.5061/dryad.fc37vr6/2
title: R codes

description: R codes used for the analysis.
DOI: 10.5061/dryad.ff11k13/1
title: Field survey data of leaf damage

description: Field survey data detailing the number of leaves showing signs of damage and the number of leaves not showing damage for Arabis alpina plants from different elevations.
DOI: 10.5061/dryad.ff11k13/2
title: Frequency of different damage types in field

description: Field survey data detailing whether surveyed plants from different elevations show one of four different damage types.
DOI: 10.5061/dryad.ff11k13/3
title: Rosette size estimates from experiment 1

description: Data on maximum leaf length for Arabis alpina plants from different elevations grown in a common greenhouse environment.
DOI: 10.5061/dryad.ff11k13/4
title: Larval mass data from experiment 1

description: Data on larval performance (mass) on Arabis alpina plants from different elevations when plants were grown in a common greenhouse environment.
DOI: 10.5061/dryad.ff11k13/5
title: Larval survival in experiment 1

description: Larval survival data on Arabis alpina plants from different elevation when plants were grown in a common greenhouse environment.
DOI: 10.5061/dryad.ff11k13/6
title: Growth, morphology and larval performance in experiment 2

description: Data from experiment 2 on plant growth and morphology, as well as larval performance on these plants, when plants were grown in common greenhouse conditions.
DOI: 10.5061/dryad.ff11k13/7
title: Constitutive glucosinolates

description: Amounts of constitutive leaf glucosinolates for Arabis alpina plants from different elevation grown in a common greenhouse environment.
DOI: 10.5061/dryad.g7s0hk3/1
title: Supplementary Figure 1

description: Median age estimates and 95% HPDs obtained to demonstrate the behaviour of the FBD process without the subsampling of fossil occurrences. These results demonstrate the suitability of the simulation framework employed for subsequent analyses.
DOI: 10.5061/dryad.gp65g2t/1
title: All data (bat activity) for Lewanzik et al 2019, J Anim Ecol

description: All data for Lewanzik et al 2019, J Anim Ecol, consisting of bat activity as a function of several predictors in a field playback study. All details are in the article.
DOI: 10.5061/dryad.jh050b4/1
title: Group1_performance

description: Nymphal duration, adult longevity, and fertility data of Group 1.
DOI: 10.5061/dryad.jh050b4/2
title: Group2_performance

description: Nymphal duration, adult longevity, and fertility data of Group 2.
DOI: 10.5061/dryad.jh050b4/3
title: Spiroplasma density

description: Infection density of Spiroplasma (copy/sample)
DOI: 10.5061/dryad.k5r20q0/1
title: Dryad

description: Excel file with three worksheets. One has a readme and description of all variable names, data types, etc.  Second worksheet has ATG and TDNA identifiers. Third worksheet has the phenotypic data.
DOI: 10.5061/dryad.kj7rh04/1
title: DATA Electronic Supplementary Material
DOI: 10.5061/dryad.n1701c9/1
title: Phenotypic data of R. hastatulus

description: Phenotypic data across three time points for thirty populations across two chromosome races of Rumex hastatulus.
DOI: 10.5061/dryad.n1701c9/2
title: Geographic and demographic data of R. hastatulus populations

description: Geographic and demographic data of Rumex hastatulus sampled populations.
DOI: 10.5061/dryad.n2r370n/1
title: SI_alignment_99_taxa_cp12

description: Alignment (in nexus format) of 1st and 2nd codon positions of 81 protein-coding chloroplast genes from 97 green plants and two red algae outgroup taxa.
DOI: 10.5061/dryad.n2r370n/2
title: SI_alignment_99_taxa_cp3

description: Alignment (in nexus format) of 3rd codon positions of 81 protein-coding chloroplast genes from 97 green plants and two red algae outgroup taxa.
DOI: 10.5061/dryad.n2r370n/9
title: Supplementary_Information

description: This file contains all of the supplementary information from the study "Accounting for uncertainty in the evolutionary timescale of green plants through clock-partitioning and fossil calibration strategies". In total, there are 7 supplementary tables and 11 supplementary figures within.
DOI: 10.5061/dryad.n7rm21c/2
title: Robust coalescent design

description: Code for examining Fisher experimental design for coalescent processes.
DOI: 10.5061/dryad.sc26m6c/8
title: Individual-level variables (bottlenose dolphins)

description: File containing individual-level variables on bottlenose dolphins in the western gulf of Shark Bay (2007-2018) for input in network-based diffusion analysis. Includes: sex (0.5 for males, 0 for unknown, -0.5 for females), number of sightings, mitochondrial haplotype, average water depth (in m), average group size, data on sponging status and if weaned.
DOI: 10.5061/dryad.sc26m6c/9
title: Mother offspring matrix

description: Matrix containing entries of 1 between all known mother-offspring pairs in the bottlenose dolphins population in the western gulf of Shark Bay (Western Australia) between 2007 and 2018.
DOI: 10.5061/dryad.tk47202/2
title: Resilin Pictures

description: All fFluorescence microscopy pictures done for all investigated species
DOI: 10.5061/dryad.vk15g0c/1
title: Parasite Prevalence Data by Individual

description: This file contains information on each disease in each buffalo, including prevalence before and after TB diagnostics.
DOI: 10.17632/49kg95dfb5.1
title: Data for: Life cycle assessment of the carbon intensity of deep geothermal heat systems: a case study from Scotland

description: Calculation used to make the assessment of life cycle assessment for CO2 emissions from deep low-enthalpy geothermal heat.
DOI: 10.17632/c73sxd562h.1
title: Data for: Impact of cooking and fermentation by lactic acid bacteria on phenolic profile of quinoa and buckwheat seeds

description: raw data (annotated compounds, composite mass spectra, retention time & abundance) regarding phenolic compounds identified following cooking and fermentation by lactic acid bacteria on quinoa and buckwheat seeds
DOI: 10.17632/jbtn945t67.1
title: Data for: Strain measurement of particle-reinforced composites at microscale: an approach towards concurrent characterization of strain and microstructure

description: The images used for the strain measurement taken at the actual tensile test, including the undeformed image without pattern deposition, the undeformed image with pattern deposition, and the deformed image.
DOI: 10.17632/kn566mf4bp.1
title: Data for: MULTIDIMENSIONAL TRADE AND RAMSEY EFFECTS: Sustainable growth versus volatility

description: Data for the Description of an efficient trade action for decoupling Volatility and economic growth (25 OECE countries and 100 developing countries.) Kcodgoh L. Edgeweblime PII: S2352-3409(18)31458-6S2214-6628(18)30044-6 DOI: https://doi.org/10.1016/j.dib.2018.11.065 Reference: DIB3480 To appear in: Data in Brief Received date: 15 October 2018 Revised date: 2 November 2018 Accepted date: 13 November 2018 Cite this article as: Kcodgoh L. Edgeweblime , Data for the Description of the Description of an efficient trade action for decoupling Volatility and economic growth (25 OECE countries and 100 developing countries.), Data in Brief, https://doi.org/10.1016/j.dib.2018.11.065 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting galley proof before it is published in its final citable form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.
DOI: 10.17632/nzxnxxs8y6.1
title: Data for: Home Enteral Nutrition for Infants after Gastrointestinal Surgery

description: data
DOI: 10.17632/vk78wrvttf.1
title: Data for: Deacylative 1,6-Addition of Bestmann-Ohira Reagent to p-Quinone Methides for the Synthesis of α-Diazo-β-diarylphosphonates and cis-Stilbenyl Phosphonates

description: NMR spectra of crude product 4n
DOI: 10.5061/dryad.23jr5h2/10
title: De Mendoza Fig S4-5

description: FIGURE S4-5. Strict consensus tree product from the phylogenetic analysis exclusively with the characters of the tarsometatarsus. Values of Bootstrap over 50 below the branches.
DOI: 10.5061/dryad.23jr5h2/11
title: De Mendoza Fig S4-6

description: FIGURE S4-6. Strict consensus tree with all the topologies coming from the analysis of the characters of the axial skeleton. Values of Bootstrap over 50 are below the branches and Bremer supports are over. Relevant clades: a, Anatinae; b, Erismaturinae.
DOI: 10.5061/dryad.23jr5h2/12
title: De Mendoza Fig S4-7

description: FIGURE S4-7. Strict consensus tree product from the phylogenetic analysis exclusively with the characters of the appendicular skeleton. Values of Bootstrap over 50 below the branches. Relevant clade: a, diving taxa.
DOI: 10.5061/dryad.23jr5h2/5
title: De Mendoza Appendix IV results of the phylogenetic analyses with the partitions except for the skull

description: Results of the phylogenetic analyses with the characters of the axial skeleton, appendicular skeleton, and individual bones
DOI: 10.5061/dryad.23jr5h2/6
title: De Mendoza Fig S4-1

description: FIGURE S4-1. Strict consensus tree product from the analysis with the characters of the pectoral girdle. Bremer supports over the branches and bootstrap values over 50 below.
DOI: 10.5061/dryad.23jr5h2/7
title: De Mendoza Fig S4-2

description: FIGURE S4-2. Strict consensus tree obtained from the analysis with exclusively the characters from the humerus. Bremer supports over the branches and bootstrap values over 50 below. Relevant clades: a, Anatinae; b, Erismaturinae including Cayaoa bruneti.
DOI: 10.5061/dryad.23jr5h2/8
title: De Mendoza Fig S4-3

description: FIGURE S4-3. Strict consensus tree product of the phylogenetic analysis only using characters from the carpometacarpus. Values of Bootstrap over 50 below the branches.
DOI: 10.5061/dryad.23jr5h2/9
title: De Mendoza Fig S4-4

description: FIGURE S4-4. Strict consensus tree with all the topologies coming from the analysis of the characters of the femur. Values of Bootstrap over 50 are below the branches and Bremer supports are over. Relevant clade: a, Anatinae minus Chloephaga.
DOI: 10.5061/dryad.38gk4m6/5
title: batch_1.structure_Oregon_Alaska_1100_repeat_2

description: Subset of 1100 loci for individuals from Oregon and Alaska populations formatted for Structure.
DOI: 10.5061/dryad.38gk4m6/6
title: batch_1.structure_Oregon_Alaska_1100_repeat_3

description: Subset of 1100 loci for individuals from Oregon and Alaska populations formatted for Structure.
DOI: 10.5061/dryad.3gm4500/10
title: Sup Table S3

description: Accession numbers for amino acid sequences used for phlogenetic analysis.
DOI: 10.5061/dryad.3gm4500/11
title: Sup Table S4

description: Buckwheat PGs used for phylogenetic analysis.
DOI: 10.5061/dryad.3h75c0h/1
title: brideprice
DOI: 10.5061/dryad.43n9j1p/1
title: Tityrinae-mafft-nexus-clean-54taxa-95per

description: The zip file includes all loci and gene trees (produced in RAxML) for the 95% complete dataset (all UCE loci for which 95% of individuals had sequence). It additionally contains a spreadsheet with the characteristics of each of these loci.
DOI: 10.5061/dryad.5k1b239/1
title: Data to senescence in cavies

description: Data on reproduction of female cavies
DOI: 10.5061/dryad.65f22d6/1
title: Supplemental Fig 1
DOI: 10.5061/dryad.744p394/1
title: 1_recombination_maps_csv_ZIP

description: Recombination map files for D. simulans and D. melanogaster, at different smoothing resolutions. We provide moving median and LOESS smoothed maps. For Dsim, the moving median files are provided at the following resolutions: 5, 25, 101, 501, and 2501 kb. For Dmel, the moving median files are provided at the following resolutions: 501, and 2501 kb, due to a lower resolution initial map. For Dsim the LOESS files are provided with the LOESS smoothing parameter set at the following levels: 0.001, 0.005, 0.02, 0.10. These levels are equivalent to moving median windows of 25, 101, 501, and 2501 kb. For Dmel, the LOESS smoothing parameter is set at: 0.02, 0.10. Finally, a raw unsmoothed recombination map is provided for Dsim, in 1 kb windows, and for Dmel at 101 kb. Details for how this raw Dsim map was produced are in our paper, Howie et et al. 2019. The R script used to produce differently smoothed recombination maps for both species is also provided as an R-Markdown file.