cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8210811
title: Ozone concentrations and meteorological factors in coastal areas of China in July of 2015-2022

description: Ozone concentrations and meteorological factors in four coastal areas of China (the coast of Fujian Province (c-FJ), the coast of Yangtze River Delta region (c-YRD), the coast of Shandong Peninsula (c-SD) and Beijing-Tianjin-Hebei (c-BTH) in July of 2015-2022. Totally 25 coastal cities were picked as typical cities representative of the studied regions (Ningde, Fuzhou, Putian, Quanzhou, Xiamen and Zhangzhou in c-FJ; Wenzhou, Taizhou, Ningbo, Zhoushan, Jiaxing, Shanghai, Nantong, Yancheng and Lianyungang in c-YRD; Rizhao, Qingdao, Weifang, Weihai, Yantai and Dongying in c-SD; Cangzhou, Tianjin, Tangshan and Qinhuangdao in c-BTH) and the data was averaged to obtain the O<sub>3</sub> concentrations and meteorological conditions regionally.
DOI: 10.5281/zenodo.8210810
title: Ozone concentrations and meteorological factors in coastal areas of China in July of 2015-2022

description: Ozone concentrations and meteorological factors in four coastal areas of China (the coast of Fujian Province (c-FJ), the coast of Yangtze River Delta region (c-YRD), the coast of Shandong Peninsula (c-SD) and Beijing-Tianjin-Hebei (c-BTH) in July of 2015-2022. Totally 25 coastal cities were picked as typical cities representative of the studied regions (Ningde, Fuzhou, Putian, Quanzhou, Xiamen and Zhangzhou in c-FJ; Wenzhou, Taizhou, Ningbo, Zhoushan, Jiaxing, Shanghai, Nantong, Yancheng and Lianyungang in c-YRD; Rizhao, Qingdao, Weifang, Weihai, Yantai and Dongying in c-SD; Cangzhou, Tianjin, Tangshan and Qinhuangdao in c-BTH) and the data was averaged to obtain the O<sub>3</sub> concentrations and meteorological conditions regionally.
DOI: 10.5517/ccdc.csd.cc2cjrl8
title: CCDC 2190850: Experimental Crystal Structure Determination

description: Related Article: Miao Wang, Shan Jiang, Xin-Xin Lu, Kun Zhang, Zi-Yi Yuan, Rui-Li Xu, Bang-Tun Zhao, An-Xin Wu|2023|Org.Biomol.Chem.|21|5949|doi:10.1039/D3OB00902E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gjqj8
title: CCDC 2280190: Experimental Crystal Structure Determination

description: Related Article: X. Liu, S. Long|2023|IUCrData|8|x230598|doi:10.1107/S2414314623005989
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gjqk9
title: CCDC 2280191: Experimental Crystal Structure Determination

description: Related Article: X. Shu, S. Long|2023|IUCrData|8|x230601|doi:10.1107/S2414314623006016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gjqlb
title: CCDC 2280192: Experimental Crystal Structure Determination

description: Related Article: K. Lu, S. Long|2023|IUCrData|8|x230600|doi:10.1107/S2414314623006004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gjqvl
title: CCDC 2280200: Experimental Crystal Structure Determination

description: Related Article: G. Tian, S. Long|2023|IUCrData|8|x230602|doi:10.1107/S2414314623006028
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gjqwm
title: CCDC 2280201: Experimental Crystal Structure Determination

description: Related Article: N. Tu, S. Long|2023|IUCrData|8|x230603|doi:10.1107/S241431462300603X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25318/3210030901-eng
title: Field crops and hay, Census of Agriculture, 2021

description: Census of Agriculture, 2021. Land in field crops and hay.
DOI: 10.5441/002/edbt.2021.30
title: COCOA: COrrelation COefficient-Aware Data Augmentation
DOI: 10.11583/dtu.22617004
title: Data for "Unveiling the plating-stripping mechanism in aluminum batteries with imidazolium-based electrolytes: A hierarchical model based on experiments and ab initio simulations"

description: Data underlying the paper "Unveiling the plating-stripping mechanism in aluminum batteries with imidazolium-based electrolytes: A hierarchical model based on experiments and ab initio simulations" https://doi.org/10.1016/j.cej.2023.144995 The dataset consists of the DFT data that underline the conclusions drawn from <i>ab initio</i> calculations in the paper.With the data located here and the plotting scripts (https://gitlab.com/asm-dtu/supporting-publication/unveiling-the-plating-stripping-mechanism-in-aluminum-batteries-with-imidazolium-based-electrolytes-a-hierarchical-model-based-on-experiments-and-ab-initio-simulations) it is possible to recreate the free energy diagram in the paper.
DOI: 10.17632/xfhwcrs2p8.1
title: The climatology of water ice aerosols in the Martian atmosphere as retrieved by MRO/CRISM

description: Dr. Khayat et al. used hyperspectral observations returned from the Compact Reconnaissance Imaging Spectrometer for Mars (CRISM) aboard the Mars Reconnaissance Orbiter (MRO) to provide retrievals of the column-integrated optical depth of water ice aerosols for more than 5 Martian years between Mars Year (MY) 28 at Ls = 112° (September 27, 2006) and MY 33 at Ls = 213° (August 30, 2016).

The data here are presented in Figures 7 and 8 of the manuscript "The Mars Atmosphere Water Ice Aerosol Climatology by MRO/CRISM: 5 Mars Years of Observations " by Alain SJ. Khayat, Michael D. Smith, Michael J. Wolff , Scott D. Guzewich, Emily L. Mason, and Samuel Atwood, submitted to the Journal of Geophysical Research-Planets. 
 
The file "CRISM_tau_ice_climatology.dat“ is a table of the CRISM climatology of water ice aerosols in the Martian atmosphere. It includes the following information: West longitude, latitude, season (Ls), and the water ice aerosol optical depth around 3300 nm.
DOI: 10.5281/zenodo.61742
title: Lipid Center-Of-Mass Trajectory: Short-Time Dynamics

description: This file contains the center-of-mass coordinates of the lipid molecules in a Molecular Dynamics simulation of a hydrated lipid bilayer. The simulated system consists of 2033 POPC (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine) molecules and 57952 water beads (equivalent to 231808 water molecules), using the coarse-grained representation of the MARTINI force field. Note that the mass of a POPC molecule is significantly higher (936 g/mol) in this representation than the mass of a real POPC molecule (760 g/mol). The simulation was performed in an NVT ensemble at T = 320 K.

This trajectory stores the short-time dynamics of the lipid centers of masses, sampled at a time step of 0.03 ps up to a total length of 300 ps. The long-time dynamics are available at http://dx.doi.org/10.5281/zenodo.61743.

For a detailed description of the simulation, see the thesis of Sławomir Stachura, available at http://www.theses.fr/2014PA066239

Two analyses of this simulation have already been published:


	S. Stachura and G.R. Kneller Anomalous lateral diffusion in lipid bilayers observed by molecular dynamics simulations with atomistic and coarse-grained force fields Mol. Sim. 40, 245-250 (2014) (http://dx.doi.org/10.1080/08927022.2013.840902)
	S. Stachura and G.R. Kneller Probing anomalous diffusion in frequency space J. Chem. Phys. 143, 191103 (2015) (http://dx.doi.org/10.1063/1.4936129)


This work was funded by the French Agence Nationale de la Recherche (Contract No. ANR- 2010-COSI-01-001).

<strong>Trajectory data</strong>

The trajectory is stored in an HDF5 file that uses the ActivePapers conventions (http://www.activepapers.org/). Any HDF5-compatible software can be used to read the trajectory data. The ActivePapers software is only required to re-use the included conversion script.

The trajectory is contained in the group<br>
  /data/POPC_martini_nvt

It is stored in H5MD/MOSAIC format. The positions and time labels are contained in the following datasets:<br>
  /data/POPC_martini_nvt/particles/universe/position/value<br>
  /data/POPC_martini_nvt/particles/universe/position/time

For a complete specification of the H5MD/MOSAIC format, see:<br>
  http://nongnu.org/h5md/index.html<br>
  http://mosaic-data-model.github.io/mosaic-specification/h5md_mosaic_module.html

<strong>Plots</strong>

Two 3D plots are provided to give an overview of the lipid motions:<br>
  /documentation/all_lipids.pdf<br>
  shows all the lipid center-of-mass positions once every 3 ps.<br>
  /documentation/one_lipids.pdf<br>
  shows a single lipid center of mass position every 0.3 ps.
DOI: 10.5281/zenodo.61743
title: Lipid Center-Of-Mass Trajectory: Long-Time Dynamics

description: This file contains the center-of-mass coordinates of the lipid molecules in a Molecular Dynamics simulation of a hydrated lipid bilayer. The simulated system consists of 2033 POPC (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine) molecules and 57952 water beads (equivalent to 231808 water molecules), using the coarse-grained representation of the MARTINI force field. Note that the mass of a POPC molecule is significantly higher (936 g/mol) in this representation than the mass of a real POPC molecule (760 g/mol). The simulation was performed in an NVT ensemble at T = 320 K.

This trajectory stores the long-time dynamics of the lipid centers of masses, sampled at a time step of 18 ps up to a total length of 600 ns. The short-time dynamics are available at http://dx.doi.org/10.5281/zenodo.61742.

For a detailed description of the simulation, see the thesis of Sławomir Stachura, available at http://www.theses.fr/2014PA066239

Two analyses of this simulation have already been published:


	S. Stachura and G.R. Kneller Anomalous lateral diffusion in lipid bilayers observed by molecular dynamics simulations with atomistic and coarse-grained force fields Mol. Sim. 40, 245-250 (2014) (http://dx.doi.org/10.1080/08927022.2013.840902)
	S. Stachura and G.R. Kneller Probing anomalous diffusion in frequency space J. Chem. Phys. 143, 191103 (2015) (http://dx.doi.org/10.1063/1.4936129)


This work was funded by the French Agence Nationale de la Recherche (Contract No. ANR- 2010-COSI-01-001).

<strong>Trajectory data</strong>

The trajectory is stored in an HDF5 file that uses the ActivePapers conventions (http://www.activepapers.org/). Any HDF5-compatible software can be used to read the trajectory data. The ActivePapers software is only required to re-use the included conversion script.

The trajectory is contained in the group<br>
  /data/POPC_martini_nvt

It is stored in H5MD/MOSAIC format. The positions and time labels are contained in the following datasets:<br>
  /data/POPC_martini_nvt/particles/universe/position/value<br>
  /data/POPC_martini_nvt/particles/universe/position/time

For a complete specification of the H5MD/MOSAIC format, see:<br>
  http://nongnu.org/h5md/index.html<br>
  http://mosaic-data-model.github.io/mosaic-specification/h5md_mosaic_module.html

<strong>Plots</strong>

Two 3D plots are provided to give an overview of the lipid motions:<br>
  /documentation/all_lipids.pdf<br>
  shows all the lipid center-of-mass positions once every 0.3 ps.<br>
  /documentation/one_lipids.pdf<br>
  shows a single lipid center of mass position every 10 ps.
DOI: 10.5441/002/edbt.2022.04
title: ArrayQL Integration into Code-Generating Database Systems
DOI: 10.13120/b6aj-2s32
title: 2022.OGS.GPS.solution
title: GNSS time series and velocities about a slow convergent margin processed on HPC clusters: products and robustness evaluation
DOI: 10.17632/8gcncg6zkt.3
title: ARCOS, a computational approach for automatic recognition of collective signalling

description: This repository contains supplementary data for the publication: Gagliardi et al. (2022) "Automatic detection of spatio-temporal signalling patterns in cell collectives". 

The supplementary data contains:

* CSV files with image segmentation results,
* R notebooks with results of the analysis,
* Jupyter notebooks to view the results in the napari image viewer.

Raw image data available upon request.
DOI: 10.18138/1235552
title: Public Data Set: Impedance of an Intense Plasma-Cathode Electron Source for Tokamak Plasma Startup

description: This data set contains openly-documented, machine readable digital research data corresponding to figures published in E.T. Hinson et al., 'Impedance of an Intense Plasma-Cathode Electron Source for Tokamak Plasma Startup,' Physics of Plasmas 23, 052515 (2016).
DOI: 10.21227/dtfr-b327
title: Large-Scale Urban IoT Dataset

description: This dataset contains one month of the binary activity of the 4060 urban IoT nodes. Each record in the dataset presents the node ID, the time stamp, the location of the IoT node in latitude and longitude, and also the binary activity of the IoT node. The main purpose of this dataset is to be used as part of distributed denial of service (DDoS) attack research.
DOI: 10.25318/1410006401-eng
title:  Employee wages by industry, annual

description: Average hourly and weekly wage rate, and median hourly and weekly wage rate by North American Industry Classification System (NAICS), type of work, sex, and age group, last 5 years.
DOI: 10.25318/1810000601-eng
title:  Consumer Price Index, monthly, seasonally adjusted

description: Monthly indexes for major components and special aggregates of the Consumer Price Index (CPI), seasonally adjusted, for Canada. Data are presented for the current month and previous four months. The base year for the index is 2002=100.
DOI: 10.5066/p9y5o93q
title: Abiotic and biotic factors reduce viability of a high-elevation salamander in its native range

description: Includes data used to estimate population demographic parameters for an exemplary high-elevation amphibian species, the federally endangered Shenandoah salamander (Plethodon shenandoah). These parameters were entered into a Markov projection model which we used to forecast the future population status of the Shenandoah salamander.
DOI: 10.5281/zenodo.3255048
title: FitHiChIP: Identification of significant chromatin contacts from HiChIP data

description: FitHiChIP is a computational method for identifying chromatin contacts among regulatory regions such as enhancers and promoters from HiChIP/PLAC-seq data. <strong>Functionalities</strong> of FitHiChIP include: 1) Calling significant interactions / loops / contacts from a HiChIP / PLAC-seq data 2) Identifying peaks (enriched segments) from a HiChIP data (i.e. HiChIP peak caller) 3) Finding differential loops among non-differential loci between two different categories of HiChIP samples, each with one or more replicates. <strong>GitHub page</strong>: github.com/ay-lab/FitHiChIP <strong>Documentation</strong>: https://ay-lab.github.io/FitHiChIP/ <strong>Citation</strong>: Please check the above documentation regarding citation of FitHiChIP About this repository: All the data and results provided here correspond to the published manuscript. The file <strong>Data_Summary.xlsx</strong> summarizes for each figure, corresponding tables storing the related datasets.
DOI: 10.6084/m9.figshare.22323328
title: Data set of_ On the emplacement of the impact melt at the Dhala impact structure, India_ manuscript.xlsx

description: <strong>Table 1:</strong> Summary of rock magnetic results. N- number of cores. Km- mean bulk susceptibility, P'- corrected degree of magnetic anisotropy, and T- shape factor of AMS ellipsoid. Int- intensity, D°- declination, I°- inclination, and Conf°- confidence angles of the maximum (K1) and minimum (K3) principal susceptibility axes. See supplementary table 1 for individual specimens. <br> <strong>Supplementary Table 1:</strong> Summary of rock magnetic results. Km- mean bulk susceptibility, P'- corrected degree of magnetic anisotropy, and T- shape factor of AMS ellipsoid. Int- intensity, D°- declination, and I°- inclination. <strong>Supplementary Table 2:</strong> table showing the outcrops, sites, specimen number and orientations of the flow indicators.
DOI: 10.6084/m9.figshare.22491100
title: Modelling host-Trypanosoma brucei gambiense interactions in vitro using human induced pluripotent stem cell-derived cortical brain organoids

description: The generation of human brain organoids from stem cells has provided unprecedented insights into the mechanisms underlying brain development and holds the promise to study infections affecting the brain, including sleeping sickness. However, brain organoids have not yet been exploited to study this disease. Sleeping sickness is caused by the extracellular parasite <em>Trypanosoma brucei</em> and is associated with neuroinflammation and neuropsychiatric disorders, including disruption of sleep/wake patterns, and is now recognised as a circadian disorder. Sleeping sickness is traditionally studied using murine models of infection due to the lack of alternative <em>in vitro</em> systems that fully recapitulate the cellular diversity and functionality of the brain. This challenge can now be overcome with the use of stem cell-derived human brain organoids generated <em>in vitro</em>. These brain organoids represent cutting-edge tools that can offer invaluable insights into the mechanisms of brain development and are beginning to be exploited to study host-pathogen interactions as an alternative to murine models of infection. The aim of this study is to develop a much-needed <em>in vitro</em>system that reduces and replaces live animals for the study of infections in the central nervous system, using sleeping sickness as a model infection. The use of human brain organoids to study neuroinflammation induced by African trypanosomes has not been implemented before, with only a limited number of studies reporting the utility of the organoids to study infections such as Zika Virus (ZIKV), toxoplasmosis and malaria, and SARS2-cov-19. We propose that the adoption of organoid systems will be beneficial to researchers studying mechanisms of brain infection by protozoan parasites. Furthermore, organoid systems have the potential to be used to study other parasites that affect the brain, including neurocysticercosis, significantly reducing the number of animals undergoing moderate and/or severe protocols associated with the study of neuroinflammation and brain infections.
DOI: 10.6084/m9.figshare.921692
title: Student Association for Fire Ecology 2012 Chapter Survey Questions

description: These questions were sent out to members of the Student Association for Fire Ecology.
DOI: 10.6073/pasta/b746e13f00ca73b8b3b57adc549419f7
title: Instantenous rates of ecosystem carbon fluxes: The influence of natural enemies on plant community composition and productivity

description: The purpose of this experiment is to determine the influences of natural enemies, including plant pathogenic fungi and insect pests, influence plant community composition, productivity, and diversity over time. The experiment is being conducted in an old field that is burned every other year. Within the old field, there are 8 blocks, and within each block there are 6 treatments: foliar fungicide, soil drench fungicide, foliar insecticide, mammal exclosure, the combination of all enemy suppression tactics (pesticides and mammal exclosure), and a nontreated control. The pesticides are applied repeatedly throughout the growing season. Within the plots, community productivity, species composition, percent cover, and pest damage are being quantified over time.
DOI: 10.6084/m9.figshare.23828130
title: data result.xlsx

description: We use content analysis to compare local media coverage with central media coverage in Chengdu, the main city of the protests, 6 online media platforms and 987 covid-related tweets are included to analyze the crisis coverage gap. We encode tweets and tables present the result of data analysis.
DOI: 10.6084/m9.figshare.23274149.v1
title: <strong>The ARRIVE Essential 10: author checklist - Gel combination of </strong><em><strong>Centella asiatica</strong></em><strong> extract transfersomes and bergamot essential oil nanoemulsion exhibited anti-photoaging effects on UVB-radiated BALB/c mice</strong>

description: The ARRIVE Essential 10: author checklist generated from “Gel combination of <em>Centella asiatica</em> extract transfersomes and bergamot essential oil nanoemulsion exhibited anti-photoaging effects on UVB-radiated BALB/c mice” submitted to F1000Research <br> <br> <em>Abbreviations</em>: Control group: normal; UVB group: UVB exposure + topically applied with base gel Carbopol; UVB + NT 0,3% group: UVB exposure + topically applied with gel combination 0,3% CA non-transfersomes (CA extract) and BEO 1% nanoemulsion; UVB + T 0,15% group: UVB exposure + topically applied with gel combination 0,15% CA transfersomes and 1% BEO nanoemulsion; UVB + T 0,3% group: UVB exposure + topically applied with gel combination 0,3% CA transfersomes and 1% BEO nanoemulsion; UVB + T 0,6% group: UVB exposure + topically applied with gel combination 0,6% CA transfersomes and 1% BEO nanoemulsion.
DOI: 10.6084/m9.figshare.23828397.v1
title: 3-D Vp and Vs models of southern Mariana Margin

description: res -----&gt; The 3-D P and S wave velocity modelsforward_res -----&gt; the arrival-time data residuals<br>
DOI: 10.17632/bg7vw74zfj.1
title: Tables

description: Table 1. The applied variables and design surfaces for each parameter
Table 2. Design matrix of three variables in actual and coded forms along with observed response
Table 3. Nanocomposites Porosimetry data of BET 
Table 4. Adsorption isotherm parameters for Cu(II) adsorption onto NC1 and NC2
Table 5. Efficiency of various adsorbents used for Cu(II) removal from aqueous solutions.
Table 6. Analysis of variance results (ANOVA) for quadratic model used for Cu (II) adsorption
DOI: 10.17632/rjk852wnvz.1
title: Time-resolved single-cell RNAseq profiling identifies a novel Fabp5+ subpopulation of inflammatory myeloid cells in chronic spinal cord injury

description: Time-resolved single-cell RNA seq data (10x 3' Single cell solution, chemistry versions 2 and 3) of myeloid cells (separated by resident and infiltrating) collected from mouse models of contusion spinal cord injury (SCI) at 1-21 days post-injury. From this data, we dentified a novel subpopulation of foam cell-like inflammatory myeloid cells that display an increased expression of Fatty Acid Binding Protein 5 (Fabp5) and comprise both central nervous system-resident and -infiltrating cells post-SCI. Data provided as a single cell experiment object, which can be loaded into an R environment.