cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25942579
title: Supplementary Material for: The Glutamatergic Effects of Clinical Repetitive Transcranial Magnetic Stimulation in Depressed Populations: A Preliminary Meta-Analysis of Proton Magnetic Resonance Spectroscopy Studies

description: Background: 
Repetitive transcranial magnetic stimulation (rTMS) alleviates symptoms of major depressive disorder, but its neurobiological mechanisms remain to be fully understood. Growing evidence from proton magnetic resonance spectroscopy (1HMRS) studies suggests that rTMS alters excitatory and inhibitory neurometabolites. This preliminary meta-analysis aims to quantify current trends in the literature and identify future directions for the field. 
Methods: 
Ten eligible studies that quantified Glutamate (Glu), Glutamate+Glutamine (Glx), or GABA before and after an rTMS intervention in depressed samples were sourced from PubMed, MEDLINE, PsychInfo, Google Scholar, and primary literature following PRISMA guidelines. Data were pooled using a random effects model, Cohen’s d effect sizes were calculated, and moderators, such as neurometabolite and 1HMRS sequence, were assessed. It was hypothesized that rTMS would increase cortical neurometabolites.
Results: 
Within-subjects data from 224 cases encompassing 31 neurometabolite effects (k) were analyzed. Active rTMS in clinical responders (n=128; k=22) nominally increased glutamatergic neurometabolites (d=0.15 [95% CI:-0.01, 0.30], p=0.06). No change was found in clinical non-responders (p=0.8) or sham rTMS participants (p=0.4). A significant increase was identified in Glx (p=0.01), but not Glu (p=0.6). Importantly, effect size across conditions was associated with the number of rTMS pulses patients received (p=0.05), suggesting dose dependence.
Conclusions and Relevance: 
Clinical rTMS is associated with a nominal, dose-dependent increase in glutamatergic neurometabolites, suggesting rTMS may induce glutamate-dependent neuroplasticity and upregulate neurometabolism. More, larger-scale studies adhering to established acquisition and reporting standards are needed to further elucidate the neurometabolic mechanisms of rTMS.
DOI: 10.5281/zenodo.10804003
title: MD simulations files for: Structure of the human dopamine transporter in complex with cocaine
DOI: 10.6084/m9.figshare.24586926
title: Vaknin et al. 2024 Source Data for "Gas seepage and pockmark formation from subsurface reservoirs: Insights from table-top experiments"

description: Vaknin et al. 2024 Source Data for "Gas seepage and pockmark formation from subsurface reservoirs: Insights from table-top experiments"; Journal of Geophysical Research - Solid Earth (2024)
DOI: 10.1594/pangaea.924460
title: Oxygen and carbon fluxes from shallow unvegetated sediments in the Clarence Estuary, NSW, Australia under warming and ocean acidification conditions

description: Dissolved organic/inorganic carbon and oxygen fluxes from whole sediment core incubations subject to temperature and ocean acidification manipulations. Estuaries make a disproportionately large contribution of dissolved organic carbon (DOC) to the global carbon cycle, but it is unknown how this will change under a future climate. As such, the response of DOC fluxes from microbially dominated unvegetated sediments to individual and combined future climate stressors of warming (from Δ-3 °C to Δ+5 °C on ambient mean temperatures) and ocean acidification (OA, ~2 times the current partial pressure of CO2, pCO2) was investigated ex situ. Warming alone increased sediment heterotrophy, resulting in a proportional increase in sediment DOC uptake, with sediments becoming net sinks of DOC (3.5 to 8.8 mmol-C m-2 d-1) at warmer temperatures (Δ+3 °C and Δ+5 °C, respectively). This temperature response changed under OA conditions, with sediments becoming more autotrophic and a greater sink of DOC (1 to 4 times greater than under current-pCO2). This response was attributed to the stimulation of heterotrophic bacteria with the autochthonous production of labile organic matter by microphytobenthos. Extrapolating these results to the global area of unvegetated subtidal estuarine sediments, the future climate of warming (Δ+3 °C) and OA may decrease the estuarine export of DOC by ~80 % (~150 Tg-C yr-1) and have a disproportionately large impact on the global DOC budget.
description: * DOC: DOC concentrations were measured via continuous-flow wet-oxidation using an Aurora 1030W total organic carbon analyser.* pH: calibrated to 3-point NIST buffer scale (R^2^ = 0.99).
DOI: 10.3217/c53m9-rk057
title: Database for ESA Service Satellite Orbit DecAy (SODA)

description: Data comprises the research results of the analysis 116 interplanetary coronal mass ejections (ICMEs) which were used to establish the forecasting service SODA (Satellite orbit DecAy), which is available with the ESA Space Service Network, Expert Service Center Ionosphere (I.161). For each ICME the dataset includes the following parameters: Time periods of the disturbance as take from the Richardson and Cane ICME catalogue  https://izw1.caltech.edu/ACE/ASC/DATA/level3/icmetable2.htm, minimum Bz component (ACE spacecraft) and the corresponding time stamp, orbit decay for 490 km, start and end time of the orbit decay, time difference between minimum Bz and orbit decay end, used satellite and approach, geomagnetic indices (ap, aa, am, kp, dat ae,pcn,pcs) and solar indices (F10.7, F30).
DOI: 10.3886/e124903v1
title: Data and Code for: Myopia and Anchoring

description: We develop an equivalence between the equilibrium effects of incomplete information and those of two behavioral distortions: myopia, or extra discounting of the future; and anchoring of current behavior to past behavior, as in models with habit persistence or adjustment costs. We show how these distortions depend on higher-order beliefs and GE mechanisms, and how they can be disciplined by evidence on expectations. We finally illustrate the use of our toolbox with a quantitative application in the context of inflation, a bridge to the HANK literature, and an extension to networks.
DOI: 10.4121/20486157
title: Sea surface temperature data reconstructed by unsaturated alkenone index and foraminiferal Mg/Ca since 4 Ma

description: Sea surface temperature records reconstructed by unsaturated alkenone index and foraminiferal Mg/Ca since 4 Ma from North Atlantic (ODP Site 982, DSDP Site 607); North Pacific (ODP Site 1012); Equatorial Pacific (ODP Sites 846, 1237, 1239); Arabian Sea (ODP Site 722); Indian Ocean (ODP Site 709C) and Southern Ocean (ODP Sites 1082, 1090, 1094).
DOI: 10.4225/08/56dcd9249b224
title: Global 30s resolution land use for 2005

description: A global map of 5 land use types at 30s (approx. 1km) resolution for 2005. The data set was generated through the statistical downscaling of the Land-use Harmonisation data set (Hurt et al 2011) at http://luh.umd.edu/. Five land use types (primary, secondary, pasture, crop, urban) are provided as separate raster layers, with the value of each cell representing the proportion of the grid cell occupied by that land use type. An additional layer representing cells defined as permanent ice (value of 1) is also provided.
DOI: 10.5281/zenodo.10275593
title: Gravity and magnetotelluric data in the Asal Rift, Republic of Djibouti

description: Gravity data were obtained from a gravimetric survey carried out by BRGM between 1979 and 1980. Magnetotelluric data was produced in 2007 (Árnason et al, 2008, Khodayar, 2008) in collaboration with Iceland Geosurvey (ISOR), Reykjavik Energy Invest (REI) and the Centre d'Etude et de Recherche de Djibouti (CERD).
DOI: 10.5281/zenodo.3697103
title: Genotypes, variants and pedigree from a human parent-offspring trio (NA12878)

description: This dataset includes whole genome sequencing data, produced at the French National Research Center for Human Genomics (CNRGH), with known pedigree information:<br> - The VCF file contains genotypes and variants from a CEU parent-offspring trio comprising NA12878 (child), NA12891 (father) and NA12892 (mother).<br> For each member, 150-bp paired-end whole genome sequencing data were generated on the Illumina HiSeq X system, from a PCR-free library (40x).<br> - The TFAM file contains pedigree information of this CEU parent-offspring trio.
description: This dataset supports the following paper, so please use this citation to cite this dataset: E. Larsonneur, J. Mercier, N. Wiart, E. Le Floch, O. Delhomme and V. Meyer, "Evaluating Workflow Management Systems: A Bioinformatics Use Case," 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Madrid, Spain, 2018, pp. 2773-2775. doi: 10.1109/BIBM.2018.8621141 Source: https://dx.doi.org/10.1109/BIBM.2018.8621141
DOI: 10.5281/zenodo.7652173
title: Patient's Consent Form

description: Patient’s Consent Form
DOI: 10.5281/zenodo.7714213
title: Information sheet

description: Information sheet
DOI: 10.5281/zenodo.7714215
title: STROBE checklist for 'Prevalence Rates of Mucopolysaccharidosis in Iraq: a retrospective cross-sectional observational study.'

description: STROBE checklist for 'Prevalence Rates of Mucopolysaccharidosis in Iraq: a retrospective cross-sectional observational study.'
DOI: 10.5281/zenodo.7738235
title: Dataset for manuscript: Rock anisotropy promotes hydraulic fracture containment at depth

description: This is the experimental data used in manuscript: "Rock anisotropy promotes hydraulic fracture containment at depth". This data set has 5 folders: K1, T2, M3 and M4 contain the raw data collected by active acoustic monitoring system and various pumps and transducers. <br> The readings of the Top Industrie syringe pump (for fluid injection), pressure transducers at downstream, and GDS pumps that provide confining stresses along all three directions via flatjacks are provided by two excel spreadsheets - Low_frequency_measurements.csv and Pump_reading.csv.<br> For active acoustic data, there are four different files named by the starting time for each experiment. The .json file contains the basic information of each experiment. The .txt file contains the acquisition time for each active acoustic sequence. The .bin file contains the collected waveforms of all acoustic sequences. Processed_data includes the synchronized pressure data (Pressure_data.xlsx) and detailed acoustic emission results (AE_K1.csv, AE_T2.csv, AE_M3.csv, AE_M4.csv).<br>
DOI: 10.5281/zenodo.7783396
title: Underlying data for Prevalence Rates of Mucopolysaccharidosis in Iraq: a retrospective cross-sectional observational study

description: Underlying data for Prevalence Rates of Mucopolysaccharidosis in Iraq: a retrospective cross-sectional observational study
DOI: 10.5281/zenodo.8052859
title: Possible Eoarchean records of the geomagnetic field preserved in the Isua Supracrustal Belt, southern west Greenland

description: We present paleomagnetic field tests that hint that a record of Earth’s 3.7-billion-year (Ga) old magnetic field may be preserved in the banded iron formation from the northeastern Isua Supracrustal belt. Magnetite in the banded iron formation has a Pb-Pb age of 3.7 Ga (Frei et al., 1999).  The U-Pb system has a closure temperature between 150-400°C for the magnetite grain size range observed in the banded iron formation, suggesting the rocks have not been significantly heated since magnetization was acquired. We use a `pseudo' baked contact test to assess paleodirections in the banded iron formation that have avoided thermal overprints from subsequent igneous intrusions. We demonstrate that specimens that pass this test also go on to pass fold and reversal tests. We argue that the banded iron formation acquired a chemical remanent magnetization via magnetite growth during a multi-phase Eoarchean metamorphic event. We recover what appears to be the oldest known whole rock record of the geomagnetic field, and oldest known records of reversals and secular variation suggesting that Earth’s magnetic field behaviour in the Eoarchean may have been similar to that observed today.
DOI: 10.5441/001/1.715k46g2
title: Data from: Migrating curlews on schedule: departure and arrival patterns of a long-distance migrant depend on time and breeding location rather than on wind conditions

description: Background: Departure decisions in long-distance migratory bird species may depend on favourable weather conditions and beneficial resources at the destination location, overarched by genetic triggers. However, few studies have tried to validate the significance of these three concepts simultaneously, and long-term, high-resolution tagging datasets recording individual movements across consecutive years are scarce. We used such a dataset to explore intraspecific and intra-individual variabilities in departure and arrival decisions from/to wintering grounds in relation to these three different concepts in bird migration. Methods: We equipped 23 curlews (Numenius arquata) wintering in the Wadden Sea with Global Positioning System data loggers to record their spatio-temporal patterns of departure from and arrival at their wintering site, and the first part of their spring migration. We obtained data for 42 migrations over 6 years, with 12 individuals performing repeat migrations in consecutive years. Day of year of departure and arrival was related to 38 meteorological and bird-related predictors using the least absolute shrinkage and selection operator (LASSO) to identify drivers of departure and arrival decisions. Results: Curlews migrated almost exclusively to Arctic and sub-Arctic Russia for breeding. They left their wintering site mainly during the evening from mid- to late April and returned between the end of June and mid-July. There was no difference in departure times between the sexes. Weather parameters did not impact departure decisions; if departure days coincided with headwind conditions, the birds accounted for this by flying at higher altitudes of up to several kilometres. Curlews breeding further away in areas with late snowmelt departed later. Departures dates varied by only &lt;4 days in individual curlews tagged over consecutive years. Conclusions: These results suggest that the trigger for migration in this long-distance migrant is largely independent of weather conditions but is subject to resource availability in breeding areas. The high intra-individual repeatability of departure days among subsequent years and the lack of relationship to weather parameters suggest the importance of genetic triggers in prompting the start of migration. Further insights into the timing of migration in immatures and closely related birds might help to further unravel the genetic mechanisms triggering migration patterns.
DOI: 10.6084/m9.figshare.24671400
title: Supplementary Material for: Anti-reflux mucosal ablation (ARMA) - one more kid in town for the treatment of gastroesophageal reflux disease

description: Not applicable
DOI: 10.6084/m9.figshare.26064127
title: Supplementary Material for: Post excision soft x-ray radiotherapy for keloids: experience in a tertiary referral center

description: Introduction: Keloid is an abnormal proliferation of scar tissue that grows beyond the original margins of the injury. Even after complete resection, recurrences are common and pose a poorly understood challenge in dermatology. There is lack of large prospective clinical trials, thus treatment recommendations are based on retrospective analyses and small cohort studies. Superficial radiotherapy is recommended in recurrent keloids; however, the successful treatment rates vary greatly. The aim of this study is to evaluate the keloid recurrence rate after post excision soft x-ray radiotherapy and the associated factors.
Methods: We reviewed retrospective data of all patients, treated with adjuvant post excision soft x-ray radiotherapy with 12 grays in 6 sessions at the tertiary referral center, Department of Dermatology, University Hospital Zurich, Switzerland, between 2005 and 2018. We analyzed individual keloids as separate cases. Successful treatment was defined as no sign of recurrence within 2 years.
Results: Of the 200 identified patients, 90 met the inclusion criteria and were included in the final analysis. In 90 patients, 104 cases of treated keloids were analyzed. Keloids were mainly located on the trunk (49%) and were mostly caused by previous surgery (52.2%). 50% of the keloids did not relapse within 2 years after therapy. A significant factor leading to recurrence was the presence of previous therapy, with prior topical therapies, such as steroid injections or 5FU, leading to most relapses. 69.2% of keloid cases who relapsed were pretreated. Soft x-ray radiotherapy was well tolerated, with post treatment hyperpigmentation noted in 34% of patients, particularly in patients with non-Caucasian origin (61.3%).
Conclusion: Treatment of refractory keloids is difficult. Post excision radiotherapy is an established adjuvant treatment option, nevertheless, recurrence rates are high, especially in pretreated keloids. Prospective studies determining the exact dosage and fraction of post-excisional radiotherapy are needed to determine the optimal radiation parameters.
DOI: 10.6084/m9.figshare.26368801
title: Supplementary Material for: Association of gum treatment with cognitive decline and dementia risk among older adults with periodontal symptoms: a 12-year prospective cohort study

description: Introduction: This study examines the associations of gum treatment with cognitive decline and dementia risk among older adults with periodontal symptoms in the US. Methods: A cohort of 866 adults aged ≥50 with periodontal symptoms was recruited for the 2008 Health and Retirement Study “Dental Health Experimental Module” and followed until 2020. Cognitive function was assessed with the Telephone Interview for Cognitive Status (TICS). Dementia status was ascertained with the Langa-Weir algorithm based on TICS scores and proxy assessments. Linear mixed-effects model and multivariable Cox regression models were utilized to analyze the associations of gum treatment with cognitive decline and the risk of dementia, respectively. Results: Of 866 participants (mean age 67.7, 61.4% women), 105 (12.1%) developed dementia with a median 9 (IQR, 6-10) years follow-up. The dementia incidence rates were lower in the group with gum treatment (7.4 vs. 12.9 per 1,000 person-years). Compared with participants who did not have gum treatment, those with gum treatment experienced a decline in TICS score that was on average 0.025 (95% CI, 0.005-0.044) points less per year and a 38% lower incidence of dementia (Hazard Ratio, 0.62; 95% CI, 0.41-0.93). These associations were consistent across participants with different severity of periodontal symptoms and sociodemographic characteristics (age, sex, race, ethnicity, and education) except for income levels. Conclusion: Prompt gum treatment for older adults with periodontal symptoms may be beneficial for their cognitive health.
DOI: 10.21227/vz7z-jc84
title: Pathfinder GPS, IMU, Wheel Odometry Data on Various Terrains

description: This dataset provides GPS, IMU, and wheel odometry readings on various terrains for the Pathfinder robot which is a lightweight, 4-wheeled, skid-steered, custom-built rover testbed platform. Rover uses a rocker system with a differential bar connected to the front wheels. Pathfinder is utilized with slick wheels to encounter more slippage. The IMU incorporated on the rover is an ADIS-16495 with 50Hz data rate. Pathfinder's quadrature encoders with 47,000 pulses/m resolution are used for wheel odometry readings with 10Hz data rate. Our setup consists of two dual-frequency Novatel GPS Receivers, and L1/L2 Pinwheel antennas, with one set mounted on a static base station and another affixed on top of the rover platform. During the experiments, 10 Hz raw GPS pseudorange and carrier-phase measurements were recorded on both receivers.
DOI: 10.21232/58kapory
title: CABO 2018-2019 Leaf-Level Spectra v2

description: null
DOI: 10.23650/data.a.2019.nga120157.k1.1.1.v1
title: 全国 1∶200 000 数字地质图（公开版）空间数据库
title: China National Digital Geological Map (Public Version at 1∶200 000 Scale) Spatial Database

description: As the only one of its kind, China National Digital Geological Map (Public Version at 1∶200 000 scale) Spatial Database (CNDGM-PVSD) is based on China' s former nationwide measured results of regional geological survey at 1∶200 000 scale, and is also one of the nationwide basic geosciences spatial databases jointly accomplished by multiple organizations of China. Spatially, it embraces 1 163 geological map-sheets (at scale 1: 200 000) in both formats of MapGIS and ArcGIS, covering 72% of China's whole territory with a total data volume of 90 GB. Its main sources is from 1∶200 000 regional geological survey reports, geological maps, and mineral resources maps with an original time span from mid-1950s to early 1990s. Approved by the State's related agencies, it meets all the related technical qualification requirements and standards issued by China Geological Survey in data integrity, logic consistency, location acc racy, attribution fineness, and collation precision, and is hence of excellent and reliable quality. The CNDGM-PVSD is an important component of China' s national spatial database categories, serving as a spatial digital platform for the information construction of the State's national economy, and providing informationbackbones to the national and provincial economic planning, geohazard monitoring, geological survey, mineral resources exploration as well as macro decision-making.
DOI: 10.34658/rdb.raveav
title: Dataset of “Quantum chemical and biological insights into redox activity of metallacarborane complexes in cancer cells”; Journal of Chemical Information and Modeling (2024)

description: Dataset of the MD simulations from K. Bednarska-Szczepaniak, K. Hałagan, M. Szwed, E. Przelazły, Z. J. Leśnikowski, “Quantum chemical and biological insights into redox activity of metallacarborane complexes in cancer cells”; Journal of Chemical Information and Modeling (2024)
DOI: 10.15468/dl.d7vhtd
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Averrhoa carambola L."
 ]
}

 The dataset includes 52 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289035-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4d9lhi
title: Occurrence Download

description: A dataset containing 478 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bursera palmeri S.Watson"
 ]
}

 The dataset includes 478 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008824-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ht7v30
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tillandsia butzii Mez",
 "Country is Mexico",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 72 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004256-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9yszz
title: Occurrence Download

description: A dataset containing 28420 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Lichen Collection - University of Washington Herbarium (WTU)"
 ]
}

 The dataset includes 28420 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006225-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.