cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2577414
title: GTEx exon-level expression summaries for Snaptron

description: GTEx exon-level expression summary from the Snaptron collection. Format is a tab-separated text file compressed and indexed using BGZip, along with supplementary files containing a Tabix index for the data (ending in tbi) as well as two files describing the samples represented in the columns of the data file (ending in tsv). Uses GENCODE v25 annotation for quantification. Source data for the quantification are the bigWig files produced as part of recount2. More information at http://snaptron.cs.jhu.edu.
description: Supported by NIH grant R01GM118568 to BL and NIH Cloud Credits Pilot award CCREQ-2017-03-00086 to BL
DOI: 10.5281/zenodo.2577415
title: GTEx exon-level expression summaries for Snaptron

description: GTEx exon-level expression summary from the Snaptron collection. Format is a tab-separated text file compressed and indexed using BGZip, along with supplementary files containing a Tabix index for the data (ending in tbi) as well as two files describing the samples represented in the columns of the data file (ending in tsv). Uses GENCODE v25 annotation for quantification. Source data for the quantification are the bigWig files produced as part of recount2. More information at http://snaptron.cs.jhu.edu.
description: Supported by NIH grant R01GM118568 to BL and NIH Cloud Credits Pilot award CCREQ-2017-03-00086 to BL
DOI: 10.25345/c5304z
title: MassIVE MSV000083485 - GNPS_density_gradient_preliminary_5x
title: Density gradient applied on WT mice fecal samples. Resulted metabolomics data is presented from different fecal layers vs homogenate. It is more concentrated 5x set of samples.
DOI: 10.6073/pasta/b31ad0d996b63d58e220c2625fe5f4c8
title: 1:10,000 Soils, Niwot Ridge LTER Project Area, Colorado

description: Soils data digitized from 1:10,000 soils maps for most of length of Niwot Ridge. Source maps and soil classifications taken from Scott Burns' doctoral dissertation (Burns 1980).
				NOTE: This EML metadata file does not contain important geospatial data processing
				information. Before using any NWT LTER geospatial data read the ArcGIS metadata XML
				file in either ISO or FGDC compliant format using ArcGIS software or by viewing the .xml file provided with the geospatial dataset.
DOI: 10.17632/cyhdvkxkr4.1
title: Analysis the mechanism IL-36α in Wound-Induced Hair Follicle Neogenesis

description: The mice were under isoflurane (RWD Life Science Co., Shenzhen, China) inhalation anesthesia and the dorsal hair was shaved. Skin wounds were made by excising a 1.5 cm2 square of full-Thickness dorsal skin (used for investigating wound healing and related hair neogenesis as indicated). For WIHN promotion experiment, 50µL of mrIL-36α (1ng/μL) or PBS was injected into healing wound (under scab) from post-wound day (PWD) 7 to PWD 14. Healed skin was taken at PWD 28 and incubated in 5% dispase (Gibco, Japan) at room temperature overnight. Remove the epidermal portion under a dissecting microscope. Fixed the dermal portion in formalin for 10 minites. Rinsed with PBS three times and incubated with BCIP/NBT (BCIP/NBT Alkaline Phosphatase Color Development Kit, Jiangsu, China) for 30 minites. Finally, rinsed with distilled water twice to stop the reaction. Hair follicle counting was under the dissecting microscope. Total RNA was extracted with miRNeasy mini kit (Qiagen, Germany) following the manufacturer’s instructions. cDNA was synthesized from RNA by GoScriptTM Reverse Transcription System (Promega, USA). RT-PCR was performed in 96-well plates by 7900HT Fast RTPCR system (Applied Biosystems, USA). As an internal control, GAPDH levels were quantified in parallel with target genes. Normalization and fold changes were calculated using the △△Ct method. Mouse dorsal skin was harvested. Fat underlying the subcutis was mechanically scraped and the skins were incubated in dispase (2mg/ml) for 40min at 37℃. Epidermis was harvested by mechanical scraping with a scalpel and incubated in digestive fluid (0.05% Trypsin, 100μg/ml DNase) for 40min at 37℃. Added complete medium with equal volume to stop digestion. Cells were strained through 150 and 300 mesh filters. Resulting solution was centrifuged at 1200r for 8min. The supernatant was discarded and adult mouse-derived primary skin epithelial cells (MPSECs) were washed twice with phosphate-buffered-saline (PBS, contained 1% fetal calf serum). MPSECs in single cell suspensions in PBS were exposed to antibodies directly coupled with a fluorochrome for 25 min at 4℃. After washing twice, the cells were resuspended in PBS. FACS analyses were performed using a Flow Cytometer (BD LSRFortessa, USA). Total protein was extracted from mice skin in RIPA lysis buffer (Beyotime Biotechnology, China) with protease inhibitors and phosphatase inhibitors (Beyotime Biotechnology, China). Protein concentration was determined using the BCA assay (Thermo Scientific, USA). Samples of 30 μg of protein were applied to SDS-PAGE gels (Invitrogen) and transferred to PVDF membranes. Membranes were incubated with primary antibodies overnight at 4 °C, then incubated with horseradish peroxidase–conjugated secondary antibodies for 2 hour at room temperature. Detection was conducted using BeyoECL Plus (Beyotime Biotechnology, China).
DOI: 10.5061/dryad.5j5gh63/1
title: Data from: Individual variation in the social plasticity of water dragons
DOI: 10.5063/f1f18x01
title: SeaWiFS Ocean Color Data. Edited by Rachael Blake and Mary Hunsicker, accessed March 2017.

description: These data were accessed from https://coastwatch.pfeg.noaa.gov/erddap/griddap/erdSW1chlamday.html in March 2017. NASA GSFC Ocean Color Web distributes science-quality chlorophyll-a concentration data from the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) on the Orbview-2 satellite. This version is the 2014.0 Reprocessing (R2014.0). The SeaWiFS instrument was launched by Orbital Sciences Corporation on the OrbView-2 (a.k.a. SeaStar) satellite in August 1997, and collected data from September 1997 until the end of mission in December 2010. SeaWiFS had 8 spectral bands from 412 to 865 nm. It collected global data at 4 km resolution, and local data (limited onboard storage and direct broadcast) at 1 km. The mission and sensor were optimized for ocean color measurements, with a local noon (descending) equator crossing time orbit, fore-and-aft tilt capability, full dynamic range, and low polarization sensitivity. Citation: NASA Goddard Space Flight Center, Ocean Ecology Laboratory, Ocean Biology Processing Group; (2014): SeaWiFS Ocean Color Data; NASA Goddard Space Flight Center, Ocean Ecology Laboratory, Ocean Biology Processing Group. https://dx.doi.org/10.5067/ORBVIEW-2/SEAWIFS_OC.2014.0These data were used in analysis for a paper titled "Spatial community structure of groundfish is conserved across the Gulf of Alaska" produced by the Portfolio Effects NCEAS working group. Citation: Blake, R.E., C.L. Ward, M.E. Hunsicker, A.O. Shelton, A.B. Hollowed. In Review. Spatial community structure of groundfish is conserved across the Gulf of Alaska. Marine Ecology Progress Series.
DOI: 10.5063/f1js9npk
title: Chlorophyll-a, Aqua MODIS, NPP, L3SMI, Global, 4km, Science Quality, 2003-present (Monthly Composite). Edited by Rachael Blake and Mary Hunsicker, accessed March 2017.

description: These data were accessed from https://coastwatch.pfeg.noaa.gov/erddap/griddap/erdMH1chlamday.html (MODIS) in March 2017. This dataset has Level 3, Standard Mapped Image, 4km, chlorophyll-a concentration data from NASA's Aqua Spacecraft. Measurements are gathered by the Moderate Resolution Imaging Spectroradiometer (MODIS) carried aboard the spacecraft. This is Science Quality data. This is the August 2015 version of this dataset. Citation: Chlorophyll-a, Aqua MODIS, NPP, L3SMI, Global, 4km, Science Quality, 2003-present (Monthly Composite), doi:10.5067/AQUA/MODIS/L3M/CHL/2018.These data were used in analysis for a paper titled "Spatial community structure of groundfish is conserved across the Gulf of Alaska" produced by the Portfolio Effects NCEAS working group. Citation: Blake, R.E., C.L. Ward, M.E. Hunsicker, A.O. Shelton, A.B. Hollowed. In Review. Spatial community structure of groundfish is conserved across the Gulf of Alaska. Marine Ecology Progress Series.
DOI: 10.17632/579gvxdydd.1
title: Regional Trade Agreements covered Commitment/Reservation regarding Services Trade in Maritime Transport

description: Regional Trade Agreements covered Commitment/Reservation regarding Services Trade in Maritime Transport
DOI: 10.17632/pcxmm2hnfw.1
title: Geomorphic Flood Index (GFI) workflow

description: This is a software package consisting of the implementation of the Geomorphic Flood Index (GFI) workflow in Python programming language. Desktop version with instructions for compiling and test cases included. It is featured in Tavares et al., Environmental Modelling & Software, 2019.
DOI: 10.17632/6vrhk2tvcy.1
title: Supplemental material: Intercellular Pathways from the Vasculature to the Forming Bone in the Zebrafish Larval Caudal Fin: Possible Role in Bone Formation. JSB 2019

description: This dataset includes five videos and four raw data-sets that are part of the article “Intercellular Pathways from the Vasculature to the Forming Bone in the Zebrafish Larval Caudal Fin: Possible Role in Bone Formation”. The data set contains two large volume stacks, obtained by cryo FIB-SEM and three fluorescence images. Stack A contains 616 micrographs comprising a volume of x = 30.75 µm, y = 23.06 µm, z = 12.32 µm, with a voxel size of x = 10 nm, y = 10 nm, z = 20 nm. Stack B: contains 609 micrographs comprising a volume of x = 37.4 µm, y = 23.4 µm, z = 24.4 µm, with a voxel size of x = 20 nm, y = 20 nm, z = 40 nm. Please see the attached PDF file for detailed video captions
DOI: 10.17632/jb555x5fdj.1
title: Co-transcriptional loading of RNA export factors shapes the human transcriptome

description: During gene expression, RNA export factors are mainly known for driving nucleocytoplasmic transport. Whilst early studies suggested that the Exon Junction Complex provides a binding platform for them, subsequent work proposed that they are only recruited by the Cap-Binding Complex to the 5’ end of RNAs, as part of TREX. Using iCLIP, we show that the export receptor Nxf1 and two TREX subunits, Alyref and Chtop, are actually recruited to the whole mRNA co-transcriptionally via splicing but before 3’-end processing. Consequently, Alyref alters splicing decisions and Chtop regulates alternative polyadenylation. Alyref is recruited to the 5’-end of RNAs by CBC and our data reveal subsequent binding to RNAs near EJCs. We demonstrate eIF4A3 stimulates Alyref deposition not only on spliced RNAs close to EJC sites, but also single exon transcripts. Our study reveals mechanistic insights into the co-transcriptional recruitment of mRNA export factors and how this shapes the human transcriptome.
DOI: 10.17632/dd695p6pr3.1
title: Experimental Data on Conduction and Switching Power Losses of Modular Multilevel Cascaded Converter

description: Experimental data of conduction and switching power losses of IGBT and diode of a modular multilevel cascaded converter. This shows the following; a. relationship between Conduction losses with respect to carrier frequencies and modulation indices for three different Pulse width Modulation technique. b. relationship between Switching losses with respect to carrier frequencies and modulation indices for three different Pulse width Modulation technique.
DOI: 10.17632/rmjm32hd6n.1
title: Selective roles of vertebrates PCF11 in premature and full-length transcript termination. Kamieniarz-Gdula et al.

description: Unprocessed imaging data for the publication "Selective roles of vertebrates PCF11 in premature and full-length transcript termination." by Kamieniarz-Gdula et al.
DOI: 10.17632/tp4n84ny5g.1
title: Structural Basis for the Action of an All-Purpose Transcription Anti-Termination Factor. Krupp et al

description: Structural Basis for the Action of an All-Purpose Transcription Anti-termination Factor: Original gel images.
DOI: 10.17632/z2pgxpds5v.1
title: Data for: Prospective Study of Clinical, Radiological, and Functional Outcome of Anterior Bridge Plating (Mipo) of Shaft of Humerus Fracture

description: Anterior bridge plating for shaft of Humerus fracture.
DOI: 10.17632/2ww2npfg99.1
title: Murine anastomotic leak - TXA

description: These experiments employed a validated model of bacterial-mediated failure of wound healing in mice (anastomotic leak). All mice underwent surgical anastomosis and introduction of either Enterococcus faecalis or Pseudomonas aeruginosa postoperatively. Mice were then randomized to receive either 50mM tranexamic acid or vehicle control via enema on postoperative days 1,2 and 3. Mice were sacrificed and healing was assessed on postoperative day 8 using a validated anastomotic healing score
DOI: 10.17632/9jmbzntprp.1
title: Field experiment on physical activity at ITESO
DOI: 10.17632/g547pww5w6.2
title: Data for: The time-varying spillover effect between WTI crude oil futures returns and hedge funds

description: It includes the dataset for the paper 'The time-varying spillover effect between WTI crude oil futures returns and hedge funds'.
DOI: 10.17632/zy4cgky783.1
title: Appendix 2: A Systematic Scoping Review on the Impact of Climate Variability and Change on the Energy System

description: Table A2.3 (summary of literature review studies) and Table A2.4 (summary of articles included for the qualitative study)
DOI: 10.17632/hjjg5x5rkt.3
title: Data for Investigating the behavioral, clinical and socio-economic determinants of Cardiovascular Health Outcomes in the United States

description: This data for cardiovascular health outcome analysis is extracted from the publicly released raw version of the 2015-2016 National Health and Nutrition Examination Survey (NHANES). The NHANES is a program of studies designed to assess the health and nutritional status of adults and children in the United States. The survey is unique in that it combines interviews with clinical information from physical examinations.
DOI: 10.17632/v7s6kh4mjz.1
title: Dataset of "Prospective Evaluation of Ventricular Assist Device Risk Scores’ Capacity to Predict Cardiopulmonary Exercise Parameters"

description: Full data of the study including: Mortality Cohort (Tab 1): status at 90-days following LVAD implantation, mortality/transplantation time following LVAD implantation (if applicable), risk scores (DTRS, HMRS, MELD, MELD-XI, MELD-Na), parameters used in the calculation of risk scores, baseline variables. CPET Cohort (Tab 2): Cardiopulmonary exercise test parameter values for the pre-implantation and post-implantation period (Further information about the CPET cohort patients can be found in the "Mortality Cohort" tab tracking patient study ID numbers). Reminder to prevent confusion: *Laboratory values &lt;1 are considered as 1 while calculating MELD, MELD-XI, MELD-Na scores to avoid negative results in logarithms. *Serum sodium values higher than 140 and lower than 125 are considered as 140 and 125 respectively while calculating MELD-Na . Please read the explanations provided in the header cell of each parameter for further information. Any information that could possibly identify patients (such as names and implantation/test dates) are withheld in accordance with our institutional policy for patient confidentiality.
DOI: 10.5281/zenodo.2577429
title: GTEx exon-exon-junction-level expression summary for Snaptron

description: GTEx exon-level expression summary from the Snaptron collection. Format is a tab-separated text file compressed and indexed using BGZip, along with supplementary files containing a Tabix index for the data (ending in tbi) as well as two files describing the samples represented in the columns of the data file (ending in tsv). Uses Rail-RNA for spliced alignment. More information at http://snaptron.cs.jhu.edu.
description: Supported by NIH grant R01GM118568 to BL and NIH Cloud Credits Pilot award CCREQ-2017-03-00086 to BL
DOI: 10.17632/9j3hwpgg46.1
title: Effect of iPad in Histopathology spotter identification – A comparative study

description: A sample size of 400 second year undergraduate dental students was selected by random sampling method of sample selection and grouped into two. Group 1: This group includes 200 students who are exposed to conventional histopathology training. Twenty Hematoxyllin and Eosin stained histopathology sections were focused. A drawing of that was drawn on the blackboard. The student drew the same with Hematoxyllin and eosin pencil in their record notebook and was checked by the teacher. Group 2: This group includes 200 students who are exposed to iPad based histopathology training method. The same twenty Hematoxyllin and eosin stained histopathology sections were focused on the microscope. The students were allowed to take photographs of that in iPad. The photos were edited by using “Brushes Redux” application. The salient points were discussed with the students and parts were marked by using the photo editor app in iOS. The edited photos were checked by the facilitator. The edited photos were compiled for future revision. Finally, both the groups were undergone a spotter test for twenty marks. The marks scored were collected, tabulated. This tabulation is shown in this dataset. This marks were statistically analysed by using Independent t test. The mean value for conventional method is 12.925 and for iPad based teaching is 17.875. Thus the results of the study reveal that there is a significant increase in the performance of the students in iPad based teaching of histopathology with a p-value less than 0.0001.
DOI: 10.25919/5c74ac8b63fc2
title: Example workflows for use with Workspace in modelling and simulation applications

description: Example workflows for MATCOM paper "Workspace: a workflow platform for supporting development and deployment of modelling and simulation " (2019).

The workflows are:
1. Hello, Workspace! - hello.wsx
2. Introducing data input and output - datainputoutput.wsx, plotsample.csv
3. Flow control and loops - loop.wsx
4. Executing an embedded script - ecmascript.wsx, pythonscript.wsx
5. Controlling path update - pathcontrol.wsx
6. Nested workflows - log.wsx, useexternalworkflow.wsx
DOI: 10.5281/zenodo.2577428
title: GTEx exon-exon-junction-level expression summary for Snaptron

description: GTEx exon-level expression summary from the Snaptron collection. Format is a tab-separated text file compressed and indexed using BGZip, along with supplementary files containing a Tabix index for the data (ending in tbi) as well as two files describing the samples represented in the columns of the data file (ending in tsv). Uses Rail-RNA for spliced alignment. More information at http://snaptron.cs.jhu.edu.
description: Supported by NIH grant R01GM118568 to BL and NIH Cloud Credits Pilot award CCREQ-2017-03-00086 to BL
DOI: 10.17632/rfkp6mtjdg.2
title: Data for: Cultural Differences in Emotion Perception Revisited: Easterners are Accurate, but Perceive Additional Non-intended Emotions in Negative Facial Expressions

description: Emotion perception from facial expressions across cultures.
DOI: 10.20350/digitalcsic/8614
title: Assembly of the Anopheles fontenillei genome

description: Genome assembly of the Anopheles fontenillei genome based on the high coverage sequencing of a single individual of this species. The raw reads for this assembly can be found in SRA under accession number SRX5100439.
DOI: 10.5281/zenodo.2577356
title: Catalog of X-ray & WISE AGN in the SDSS-IV eBOSS Stripe 82X Survey

description: This catalog contains 4847 spectroscopically identified X-ray sources and <em>WISE</em> AGN candidates within the 36.8 deg<sup>2</sup> SDSS-IV eBOSS Stripe 82X survey area. This survey overlaps the largest contiguous portion of the Stripe 82 X-ray survey (15.6 deg<sup>2</sup>). Based on X-ray luminosities or <em>WISE</em> <em>W1</em>-<em>W2</em> colors (based on Assef et al. 2018), there are 4730 AGN in this catalog: 1790 X-ray AGN and 3638 <em>WISE</em> AGN, of which 698 are X-ray and <em>WISE</em> AGN. The sample is 82% complete to <em>r</em> ~ 22, where the X-ray and <em>WISE</em> AGN samples are 88% and 82% complete, respectively, at this magnitude limit.

The redshifts and spectroscopic classifications include spectra from the SDSS-IV eBOSS Stripe 82X survey, previous data releases of SDSS (Abazajian et al. 2009; Aihara et al. 201; Alam et al. 2015; Albareti et al. 2017; Abolfathi et al. 2019; Pâris et al. 2017, 2018), 2SLAQ (Croom et al. 2009), 6dF (Jones et al. 2004, 2009), and dedicated follow-up programs of Stripe 82 X-ray sources (LaMassa et al. 2016, 2017, and published here for the first time). Description of the catalog columns are given in LaMassa et al. (2019).
DOI: 10.5281/zenodo.2577357
title: Catalog of X-ray & WISE AGN in the SDSS-IV eBOSS Stripe 82X Survey

description: This catalog contains 4847 spectroscopically identified X-ray sources and <em>WISE</em> AGN candidates within the 36.8 deg<sup>2</sup> SDSS-IV eBOSS Stripe 82X survey area. This survey overlaps the largest contiguous portion of the Stripe 82 X-ray survey (15.6 deg<sup>2</sup>). Based on X-ray luminosities or <em>WISE</em> <em>W1</em>-<em>W2</em> colors (based on Assef et al. 2018), there are 4730 AGN in this catalog: 1790 X-ray AGN and 3638 <em>WISE</em> AGN, of which 698 are X-ray and <em>WISE</em> AGN. The sample is 82% complete to <em>r</em> ~ 22, where the X-ray and <em>WISE</em> AGN samples are 88% and 82% complete, respectively, at this magnitude limit.

The redshifts and spectroscopic classifications include spectra from the SDSS-IV eBOSS Stripe 82X survey, previous data releases of SDSS (Abazajian et al. 2009; Aihara et al. 201; Alam et al. 2015; Albareti et al. 2017; Abolfathi et al. 2019; Pâris et al. 2017, 2018), 2SLAQ (Croom et al. 2009), 6dF (Jones et al. 2004, 2009), and dedicated follow-up programs of Stripe 82 X-ray sources (LaMassa et al. 2016, 2017, and published here for the first time). Description of the catalog columns are given in LaMassa et al. (2019).
DOI: 10.5517/ccdc.csd.cc20xgfv
title: CCDC 1874397: Experimental Crystal Structure Determination

description: Related Article: Sushil Kumar, Aayushi Arora, Jolly Kaushal, Preeti Oswal, Arun Kumar, Kapil Tomar|2019|New J.Chem.|43|4338|doi:10.1039/C8NJ05782F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20y0jj
title: CCDC 1874927: Experimental Crystal Structure Determination

description: Related Article: Tatyana E. Kokina, Ludmila A. Glinskaya, Liliya A. Sheludyakova, Yuliya A. Eremina, Lubov S. Klyushova, Vladislav Yu. Komarov, Dmitriy A. Piryazev, Alexey V. Tkachev, Stanislav V. Larionov|2019|Polyhedron|163|121|doi:10.1016/j.poly.2019.02.020
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.