cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1439710.v1
title: Agaricales Genomics

description: Datasets created for Dentinger et al. 2015. Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life. Biological Journal of the Linnean Society. <strong>Contents</strong> Untrimmed Single-Gene Alignments: Raw untrimmed amino acid alignments of 210 single-copy genes from 35 Agaricales taxa, plus 5 five outgroups (relaxed Phylip format). Trimmed Single-Gene Alignments: Trimmed amino acid alignments of 208 single-copy genes from 35 Agaricales taxa, plus 5 five outgroups (relaxed Phylip format). Single-Gene Analyses: Best tree from RaxML analysis single-gene amino acid sequence alignments for 208 single-copy genes from 35 Agaricales taxa plus four outgroups (Newick format). Concatinated Alignment: Final trimmed, concatinated amino acid alignment of 208 single-copy genes from 35 Agaricales taxa, plus 5 five outgroups (relaxed Phylip format) Unpartitioned Analysis: Best tree from unpartitioned RaxML analysis of concatinated alignment of amino acid sequences for 208 single-copy genes from 35 Agaricales taxa plus four outgroups (Newick format). Partition Info for Concatinated Alignment: Partition information for concatinated amino acid alignment of 208 single-copy genes from 35 Agaricales taxa, plus four outgroups. Gene names are based on Coprinopsis cinerea locus IDs Partitioned Analysis: Best tree from partitioned RaxML analysis of concatinated alignment of amino acid sequences for 208 single-copy genes from 35 Agaricales taxa plus four outgroups (Newick format).
DOI: 10.6084/m9.figshare.1439709.v1
title: Single-Gene Analyses

description: Best tree from RaxML analysis single-gene amino acid sequence alignments for 208 single-copy genes from 35 Agaricales taxa plus four outgroups (Newick format). Includes: -Best-scoring ML tree with branch lengths (RAxML_bestTree.Copci1_XXX.phy) -Best-scoring ML tree with support values (RAxML_bipartitions.Copci1_XXX.phy) -Best-scoring ML tree with branch lengths and support values as branch labels (RAxML_bipartitionsBranchLabels.Copci1_XXX.phy) -Best-scoring ML trees from each bootstrap replicate (RAxML_bootstrap.Copci1_XXX.phy) -Info about analysis (RAxML_info.Copci1_XXX.phy)
DOI: 10.6084/m9.figshare.1439749.v6
title: A FreeSurfer view of the cortical transcriptome generated from the Allen Human Brain Atlas

description: The Allen Human Brain Atlas provides an anatomically detailed view of gene expression in the brain. This full transcriptomic dataset contains over 200 million expression values. To facilitate use of this resource, we distilled the data into a matrix of 20,737 genes by 68 cortical regions that represent the automatically segmented FreeSurfer regions (Desikan-Killiany parcellation). In this data report, we describe the Allen-FreeSurfer mapping, sampling information and provide regional values of gene expression. The resulting cortical transcriptome facilitates interpretation of human neuroimaging findings by providing a molecular context. Read the full data report at: http://journal.frontiersin.org/article/10.3389/fnins.2015.00323/full AllenHBA_to_DKRegion_Map.xls - Excel file containing the mapping from Allen Brain Atlas samples to the FreeSurfer cortical regions. Each sample is referenced with a unique identifier by combining the donor ID with the x, y and z MNI152 coordinates (“10021_5.1_27.1_28.6“ for example). DKRegionStatistics.tsv - Tab separated file characterizing the FreeSurfer cortical regions. This file lists how many donors contribute to each region, Allen Brain Atlas samples per region and alternative identifiers. AllenHBA_DK_ExpessionMatrix.tsv - tab separated file containing correlation to the median values across the donors (left hemisphere only, column named ”Average donor correlation to median”) and gene expression values across the 68 FreeSurfer cortical regions (columns). This file can be opened with read.table in R or as a tab separated file in a spreadsheet program. ConsistentGOGroups.tsv – Gene Ontology enrichment analyses results for the consistency measure. InconsistentGOGroups.tsv – Gene Ontology enrichment analyses results for the consistency measure (with high ranked groups showing more inconsistency). CreateExpressionLUT.r - This R script provides the method to load and convert expression values for a specific gene into a color lookup table that can be used to visualize the averaged expression values in FreeSurfer. CreateColorBar.r - This R script will create a color bar to complement the TKSurfer generated images.
DOI: 10.6084/m9.figshare.1439699
title: Unpartitoned Analysis

description: Best tree from unpartitioned RaxML analysis of concatinated alignment of amino acid sequences for 208 single-copy genes from 35 Agaricales taxa plus four outgroups (Newick format) Includes: -Best-scoring ML tree with branch lengths (RAxML_bestTree.AllConcatinatedProt.phy) -Best-scoring ML tree with support values (RAxML_bipartitions.AllConcatinatedProt.phy) -Best-scoring ML tree with branch lengths and support values as branch labels (RAxML_bipartitionsBranchLabels.AllConcatinatedProt.phy) -Best-scoring ML trees from each bootstrap replicate (RAxML_bootstrap.AllConcatinatedProt.phy) -Info about analysis (RAxML_info.AllConcatinatedProt.phy)
DOI: 10.6084/m9.figshare.1439689
title: Trimmed single-gene alignments

description: Trimmed amino acid alignments of 208 single-copy genes from 35 Agaricales taxa, plus 5 five outgroups (relaxed Phylip format). Gene names are based on Coprinopsis cinerea locus IDs
DOI: 10.6084/m9.figshare.1439698
title: Untrimmed single-gene alignments

description: Raw untrimmed amino acid alignments of 210 single-copy genes from 35 Agaricales taxa, plus 5 five outgroups (relaxed Phylip format). Includes two genes (Copci1_6661 and Copci1_10271) that were excluded from the final analyses. Gene names are based on Coprinopsis cinerea locus IDs
DOI: 10.6084/m9.figshare.1439699.v1
title: Unpartitoned Analysis

description: Best tree from unpartitioned RaxML analysis of concatinated alignment of amino acid sequences for 208 single-copy genes from 35 Agaricales taxa plus four outgroups (Newick format) Includes: -Best-scoring ML tree with branch lengths (RAxML_bestTree.AllConcatinatedProt.phy) -Best-scoring ML tree with support values (RAxML_bipartitions.AllConcatinatedProt.phy) -Best-scoring ML tree with branch lengths and support values as branch labels (RAxML_bipartitionsBranchLabels.AllConcatinatedProt.phy) -Best-scoring ML trees from each bootstrap replicate (RAxML_bootstrap.AllConcatinatedProt.phy) -Info about analysis (RAxML_info.AllConcatinatedProt.phy)
DOI: 10.6084/m9.figshare.1439749.v7
title: A FreeSurfer view of the cortical transcriptome generated from the Allen Human Brain Atlas

description: The Allen Human Brain Atlas provides an anatomically detailed view of gene expression in the brain. This full transcriptomic dataset contains over 200 million expression values. To facilitate use of this resource, we distilled the data into a matrix of 20,737 genes by 68 cortical regions that represent the automatically segmented FreeSurfer regions (Desikan-Killiany parcellation). In this data report, we describe the Allen-FreeSurfer mapping, sampling information and provide regional values of gene expression. The resulting cortical transcriptome facilitates interpretation of human neuroimaging findings by providing a molecular context. Read the full data report at: http://journal.frontiersin.org/article/10.3389/fnins.2015.00323/full AllenHBA_to_DKRegion_Map.xls - Excel file containing the mapping from Allen Brain Atlas samples to the FreeSurfer cortical regions. Each sample is referenced with a unique identifier by combining the donor ID with the x, y and z MNI152 coordinates (“10021_5.1_27.1_28.6“ for example). DKRegionStatistics.tsv - Tab separated file characterizing the FreeSurfer cortical regions. This file lists how many donors contribute to each region, Allen Brain Atlas samples per region and alternative identifiers. AllenHBA_DK_ExpessionMatrix.tsv - tab separated file containing correlation to the median values across the donors (left hemisphere only, column named ”Average donor correlation to median”) and gene expression values across the 68 FreeSurfer cortical regions (columns). This file can be opened with read.table in R or as a tab separated file in a spreadsheet program. ConsistentGOGroups.tsv – Gene Ontology enrichment analyses results for the consistency measure. InconsistentGOGroups.tsv – Gene Ontology enrichment analyses results for the consistency measure (with high ranked groups showing more inconsistency). CreateExpressionLUT.r - This R script provides the method to load and convert expression values for a specific gene into a color lookup table that can be used to visualize the averaged expression values in FreeSurfer. CreateColorBar.r - This R script will create a color bar to complement the TKSurfer generated images.
DOI: 10.6084/m9.figshare.1439689.v1
title: Trimmed single-gene alignments

description: Trimmed amino acid alignments of 208 single-copy genes from 35 Agaricales taxa, plus 5 five outgroups (relaxed Phylip format). Gene names are based on Coprinopsis cinerea locus IDs
DOI: 10.6084/m9.figshare.1439698.v1
title: Untrimmed single-gene alignments

description: Raw untrimmed amino acid alignments of 210 single-copy genes from 35 Agaricales taxa, plus 5 five outgroups (relaxed Phylip format). Includes two genes (Copci1_6661 and Copci1_10271) that were excluded from the final analyses. Gene names are based on Coprinopsis cinerea locus IDs
DOI: 10.6084/m9.figshare.1439685
title: Partition info for concatinated alignment

description: Partition information for concatinated amino acid alignment of 208 single-copy genes from 35 Agaricales taxa, plus four outgroups. Gene names are based on Coprinopsis cinerea locus IDs
DOI: 10.6084/m9.figshare.1439685.v1
title: Partition info for concatinated alignment

description: Partition information for concatinated amino acid alignment of 208 single-copy genes from 35 Agaricales taxa, plus four outgroups. Gene names are based on Coprinopsis cinerea locus IDs
DOI: 10.6084/m9.figshare.1439674
title: Concatinated Alignment

description: Final trimmed, concatinated amino acid alignment of 208 single-copy genes from 35 Agaricales taxa, plus 5 five outgroups (relaxed Phylip format)
DOI: 10.6084/m9.figshare.1439749.v8
title: A FreeSurfer view of the cortical transcriptome generated from the Allen Human Brain Atlas

description: The Allen Human Brain Atlas provides an anatomically detailed view of gene expression in the brain. This full transcriptomic dataset contains over 200 million expression values. To facilitate use of this resource, we distilled the data into a matrix of 20,737 genes by 68 cortical regions that represent the automatically segmented FreeSurfer regions (Desikan-Killiany parcellation). In this data report, we describe the Allen-FreeSurfer mapping, sampling information and provide regional values of gene expression. The resulting cortical transcriptome facilitates interpretation of human neuroimaging findings by providing a molecular context. Read the full data report at: http://journal.frontiersin.org/article/10.3389/fnins.2015.00323/full AllenHBA_to_DKRegion_Map.xls - Excel file containing the mapping from Allen Brain Atlas samples to the FreeSurfer cortical regions. Each sample is referenced with a unique identifier by combining the donor ID with the x, y and z MNI152 coordinates (“10021_5.1_27.1_28.6“ for example). DKRegionStatistics.tsv - Tab separated file characterizing the FreeSurfer cortical regions. This file lists how many donors contribute to each region, Allen Brain Atlas samples per region and alternative identifiers. AllenHBA_DK_ExpessionMatrix.tsv - tab separated file containing correlation to the median values across the donors (left hemisphere only, column named ”Average donor correlation to median”) and gene expression values across the 68 FreeSurfer cortical regions (columns). This file can be opened with read.table in R or as a tab separated file in a spreadsheet program. ConsistentGOGroups.tsv – Gene Ontology enrichment analyses results for the consistency measure. InconsistentGOGroups.tsv – Gene Ontology enrichment analyses results for the consistency measure (with high ranked groups showing more inconsistency). CreateExpressionLUT.r - This R script provides the method to load and convert expression values for a specific gene into a color lookup table that can be used to visualize the averaged expression values in FreeSurfer. CreateColorBar.r - This R script will create a color bar to complement the TKSurfer generated images.
DOI: 10.6084/m9.figshare.1439674.v1
title: Concatinated Alignment

description: Final trimmed, concatinated amino acid alignment of 208 single-copy genes from 35 Agaricales taxa, plus 5 five outgroups (relaxed Phylip format)
DOI: 10.6084/m9.figshare.1439749.v9
title: A FreeSurfer view of the cortical transcriptome generated from the Allen Human Brain Atlas

description: The Allen Human Brain Atlas provides an anatomically detailed view of gene expression in the brain. This full transcriptomic dataset contains over 200 million expression values. To facilitate use of this resource, we distilled the data into a matrix of 20,737 genes by 68 cortical regions that represent the automatically segmented FreeSurfer regions (Desikan-Killiany parcellation). In this data report, we describe the Allen-FreeSurfer mapping, sampling information and provide regional values of gene expression. The resulting cortical transcriptome facilitates interpretation of human neuroimaging findings by providing a molecular context. Read the full data report at: http://journal.frontiersin.org/article/10.3389/fnins.2015.00323/full AllenHBA_to_DKRegion_Map.xls - Excel file containing the mapping from Allen Brain Atlas samples to the FreeSurfer cortical regions. Each sample is referenced with a unique identifier by combining the donor ID with the x, y and z MNI152 coordinates (“10021_5.1_27.1_28.6“ for example). DKRegionStatistics.tsv - Tab separated file characterizing the FreeSurfer cortical regions. This file lists how many donors contribute to each region, Allen Brain Atlas samples per region and alternative identifiers. AllenHBA_DK_ExpessionMatrix.tsv - tab separated file containing correlation to the median values across the donors (left hemisphere only, column named ”Average donor correlation to median”) and gene expression values across the 68 FreeSurfer cortical regions (columns). This file can be opened with read.table in R or as a tab separated file in a spreadsheet program. ConsistentGOGroups.tsv – Gene Ontology enrichment analyses results for the consistency measure. InconsistentGOGroups.tsv – Gene Ontology enrichment analyses results for the consistency measure (with high ranked groups showing more inconsistency). CreateExpressionLUT.r - This R script provides the method to load and convert expression values for a specific gene into a color lookup table that can be used to visualize the averaged expression values in FreeSurfer. CreateColorBar.r - This R script will create a color bar to complement the TKSurfer generated images.
DOI: 10.6084/m9.figshare.1439749.v10
title: A FreeSurfer view of the cortical transcriptome generated from the Allen Human Brain Atlas

description: The Allen Human Brain Atlas provides an anatomically detailed view of gene expression in the brain. This full transcriptomic dataset contains over 200 million expression values. To facilitate use of this resource, we distilled the data into a matrix of 20,737 genes by 68 cortical regions that represent the automatically segmented FreeSurfer regions (Desikan-Killiany parcellation). In this data report, we describe the Allen-FreeSurfer mapping, sampling information and provide regional values of gene expression. The resulting cortical transcriptome facilitates interpretation of human neuroimaging findings by providing a molecular context. Read the full data report at: http://journal.frontiersin.org/article/10.3389/fnins.2015.00323/full AllenHBA_to_DKRegion_Map.xls - Excel file containing the mapping from Allen Brain Atlas samples to the FreeSurfer cortical regions. Each sample is referenced with a unique identifier by combining the donor ID with the x, y and z MNI152 coordinates (“10021_5.1_27.1_28.6“ for example). DKRegionStatistics.tsv - Tab separated file characterizing the FreeSurfer cortical regions. This file lists how many donors contribute to each region, Allen Brain Atlas samples per region and alternative identifiers. AllenHBA_DK_ExpessionMatrix.tsv - tab separated file containing correlation to the median values across the donors (left hemisphere only, column named ”Average donor correlation to median”) and gene expression values across the 68 FreeSurfer cortical regions (columns). This file can be opened with read.table in R or as a tab separated file in a spreadsheet program. ConsistentGOGroups.tsv – Gene Ontology enrichment analyses results for the consistency measure. InconsistentGOGroups.tsv – Gene Ontology enrichment analyses results for the consistency measure (with high ranked groups showing more inconsistency). CreateExpressionLUT.r - This R script provides the method to load and convert expression values for a specific gene into a color lookup table that can be used to visualize the averaged expression values in FreeSurfer. CreateColorBar.r - This R script will create a color bar to complement the TKSurfer generated images.
DOI: 10.6084/m9.figshare.1439663
title: Membuat Piramida Penduduk dengan Microsoft Office Excel

description: Memahami komposisi penduduk menurut umur dan jenis kelamin merupakan salah satu aspek yang penting khususnya dalam analisis kependudukan dan umumnya dalam perencanaan pembangunan. Misalnya, potensi pertumbuhan penduduk ke depan dapat diperkirakan melalui pengamatan dari komposisi penduduk menurut umur dan jenis kelamin ini. Perencanaan untuk penyediaan pelayanan pendidikan, pelayanan kesehatan dan kebutuhan-kebutuhan dasar penduduk lainnya juga membutuhkan informasi mengenai komposisi penduduk menurut umur dan jenis kelamin.
DOI: 10.6084/m9.figshare.1439627
title: The proving freedom principle of trading with comparative study in France trading law and its critic

description: Abstract:<br>More attention to the social justice and uncover the truth, influenced on the rules of evidence and has created the principle of the persuasion of proof as well as the social order and the importance of reasonable dispute settlement have created the principle of legality of evidence in the common law; but in the commercial law of France, the necessity of speed and reliability in business affairs, has provided the principle of freedom of proof as the minimum effect (the removal of the restrictions of evidence by the court) and the maximum effect (equivalent to the principle of the persuasion of proof ); the application of this principle has the two main requirements: 1) the disputes will be business affairs, 2) 2-the reason for proving will be used against the merchant; This principle has as well as the exceptions that the French legal thought will be criticized in the expression of exceptions. This principle has some effects that the main effect is the removal of restrictions on admission of evidence in the field of the commercial law; the status of this principle in the Iranian law has been some ambiguity in order to the historically and require to the historical survey as well as the is seemly the despite the principle will be considered in the new draft Law of trade of Iran and the draft of commercial of criminal procedure Act of Iran.<br>Keywords: evidence, proof system, Freedom of proof, Iranian trade Law, Iranian business law, French business law
DOI: 10.6084/m9.figshare.1439616
title: NOVEL REHABILITATION ROBOTIC CONTROL STRATEGIES FOR PROMOTING MOTOR LEARNING IN THE UPPER LIMB OF THE NEUROLOGICALLY IMPAIRED

description: Poster presentation for the Society for Research in Rehabilitation Summer 2015 Meeting 9th June Newcastle on Rehabilitation in the 21st Century:Using Robots & Computers to Promote Recovery.
DOI: 10.6084/m9.figshare.1439616.v1
title: NOVEL REHABILITATION ROBOTIC CONTROL STRATEGIES FOR PROMOTING MOTOR LEARNING IN THE UPPER LIMB OF THE NEUROLOGICALLY IMPAIRED

description: Poster presentation for the Society for Research in Rehabilitation Summer 2015 Meeting 9th June Newcastle on Rehabilitation in the 21st Century:Using Robots & Computers to Promote Recovery.
DOI: 10.6084/m9.figshare.1439485
title: Quantum Economic Spirality (2)

description: Exploration of a survivalist rationality and morality for future economics
DOI: 10.6084/m9.figshare.1439490
title: Data for paper: Clark’s Nutcracker Breeding Season Space Use and Foraging Behavior

description: Data for paper: Clark’s Nutcracker Breeding Season Space Use and Foraging Behavior
DOI: 10.6084/m9.figshare.1439484
title: The Science Of Israel

description: How Jews know/A Humanistic Synopsis
DOI: 10.6084/m9.figshare.1439490.v1
title: Data for paper: Clark’s Nutcracker Breeding Season Space Use, Habitat Selection and Foraging Behavior: Importance of Douglas-fir as Secondary Habitat

description: Data for paper: Clark’s Nutcracker Breeding Season Space Use, Habitat Selection and Foraging Behavior: Importance of Douglas-fir as Secondary Habitat
DOI: 10.6084/m9.figshare.1439485.v2
title: Quantum Economic Spirality (2)

description: Exploration of a survivalist rationality and morality for future economics
DOI: 10.6084/m9.figshare.1439485.v1
title: Quantum Economic Spirality

description: Exploration of a survivalist rationality and morality for future economics
DOI: 10.6084/m9.figshare.1439474
title: Supplementary movies for : "Multiple scale model for cell migration in monolayers: Elastic mismatch between cells enhances motility"

description: Contains all movies mentioned in the main text. Here's a brief description of each movie file: SoftInNormal_Low_Density_AgingCompressed.mov Description : Aging, soft-in-normal, ρ = 0.85 SoftInNormal_High_Density_AgingCompressed.mov Description : Aging, soft-in-normal, ρ = 0.90 AllNormal_Low_Density_AgingCompressed.mov Description : Aging, all-normal, ρ = 0.85 AllNormal_High_Density_AgingCompressed.mov Description : Aging, all-normal, ρ = 0.90 SoftInNormal_Low_Density_ActiveCellsCompressed.mov Description : Motile cells, soft-in-normal, ρ = 0.85 SoftInNormal_High_Density_ActiveCellsCompressed.mov Description : Motile cells, soft-in-normal, ρ = 0.90 AllNormal_Low_Density_ActiveCellsCompressed.mov Description : Motile cells, all-normal, ρ = 0.85 AllNormal_High_Density_ActiveCellsCompressed.mov Description : Motile cells, all-normal, ρ = 0.90 SoftInNormal_High_Density_CoordinationCompressed.mov Description : Tagged soft cell and its neighbors, soft-in-normal, ρ = 0.90 2CellsHeadOnCollisionCompressed.mov Description : Determining friction with the substrate
DOI: 10.6084/m9.figshare.1439490.v2
title: Data for Paper: Clark’s Nutcracker Breeding Season Space Use, Habitat Selection and Foraging Behavior: Importance of Douglas-fir as Secondary Habitat

description: Data for paper: Clark’s Nutcracker Breeding Season Space Use, Habitat Selection and Foraging Behavior: Importance of Douglas-fir as Secondary Habitat