cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23639223.v1
title: BACI Crystal data.xlsx

description: Data associated with publication:Blankespoor, CL, HD Blankespoor, and RJ DeJong. Swimmer's itch control: timely waterfowl brood removal significantly reduces an avian schistosome population and human cases on recreational lakes. PLOS ONE.
DOI: 10.6084/m9.figshare.25323205.v1
title: FTIR

description: FTIR data of soils, precipitated and powdered CaCO3, sucrose, IHSS organic matter standards, ash, and south-west Western Australia vegetation.For all files, column A is Wavenumber (cm-1) and column B is Absorbance.
DOI: 10.6084/m9.figshare.25902142.v1
title: Arquivos gerados para análise em "Mudanças no regimes de precipitação e de temperatura"

description: Arquivos com registros selecionados e limpos, com base nas 116 estações e registros mensais (medidos e normalizados), além da diferença entre períodos (bruto e proporcional).precipitação P1precipitação P2temperatura P1temperatura P2diferença de precipitação (P2-P1)diferença de temperatura (P2-P1)
DOI: 10.6084/m9.figshare.21656726.v1
title: Supplementary Material for: Prediction of Golgi Polarity in Collectively Migrating Epithelial Cells Using Graph Neural Network

description: In the stationary epithelium, the Golgi apparatus assumes an apical position, above the cell nucleus. However, during wound healing and morphogenesis, as the epithelial cells starts migrating, it relocalizes closer to the basal plane. On this plane, the position of Golgi with respect to the cell nucleus defines the organizational polarity of a migrating epithelial cell, which is crucial for an efficient collective migration. Yet, factors influencing the Golgi polarity remain elusive. Here we constructed a graph neural network-based deep learning model to systematically analyze the dependency of Golgi polarity on multiple geometric and physical factors. In spite of the complexity of a migrating epithelial monolayer, our simple model was able to predict the Golgi polarity with 75% accuracy. Moreover, the model predicted that Golgi polarity predominantly correlates with the orientation of maximum principal stress. Finally, we found that this correlation operates locally since progressive coarsening of the stress field over multiple cell-lengths reduced the stress polarity-Golgi polarity correlation as well as the predictive accuracy of the neural network model. Taken together, our results demonstrated that graph neural networks could be a powerful tool towards understanding how different physical factors influence collective cell migration. They also highlighted a previously unknown role of physical cues in defining the intracellular organization.
DOI: 10.6084/m9.figshare.22221100.v1
title: Estimating duration of disruption to freight transport due to climate-related hazards

description: A table of hazard intensity thresholds and notes on how to estimate the duration of disruption to freight transport (road and rail) due to climate-related hazards (extreme heat, flooding and tropical cyclone winds).
DOI: 10.6084/m9.figshare.4832690.v1
title: Non-unique sgRNAs in GeCKOv2 human CRISPR library

description: A table of sgRNAs from the GeCKOv2 human library (Sanjana*, Shalem* and Zhang, Nature Methods, 2014) that target multiple genes and/or miRNAs
DOI: 10.6084/m9.figshare.5812929.v1
title: Supplementary Material for: Assessment of Postural Sway in Individuals with Multiple Sclerosis Using a Novel Wearable Inertial Sensor

description: Balance impairment is common in individuals with multiple sclerosis (MS). However, objective assessment of balance usually requires clinical expertise and/or the use of expensive and obtrusive measuring equipment. These barriers to the objective assessment of balance may be overcome with the development of a lightweight inertial sensor system. In this study, we examined the concurrent validity of a novel wireless, skin-mounted inertial sensor system (BioStamp®, MC10 Inc.) to measure postural sway in individuals with MS by comparing measurement agreement between this novel sensor and gold standard measurement tools (force plate and externally validated inertial sensor). A total of 39 individuals with MS and 15 healthy controls participated in the study. Participants with MS were divided into groups based on the amount of impairment (MS<sub>Mild</sub>: EDSS 2–4, <i>n</i> = 19; MS<sub>Severe</sub>: EDSS ≥6, <i>n</i> = 20). The balance assessment consisted of two 30-s quiet standing trials in each of three conditions: eyes open/firm surface, eyes closed/firm surface, and eyes open/foam surface. For each trial, postural sway was recorded with a force plate (Bertec) and simultaneously using two accelerometers (BioStamp and Xsens) mounted on the participant’s posterior trunk at L5. Sway metrics (sway area, sway path length, root mean square amplitude, mean velocity, JERK, and total power) were derived to compare the measurement agreement among the measurement devices. Excellent agreement (intraclass correlation coefficients &gt;0.9) between sway metrics derived from the BioStamp and the MTx sensors were observed across all conditions and groups. Good to excellent correlations (<i>r</i> &gt;0.7) between devices were observed in all sway metrics and conditions. Additionally, the acceleration sway metrics were nearly as effective as the force plate sway metrics in differentiating individuals with poor balance from healthy controls. Overall, the BioStamp sensor is a valid and objective measurement tool for postural sway assessment. This novel, lightweight and portable sensor may offer unique advantages in tracking patient’s postural performance.
DOI: 10.17632/g3d65nfsws
title: INCENDIO FORESTAL EN LA ARGENTINA

description: La incidencia de los fuegos sobre los diferentes tipos de vegetación de la Argentina datan de muy antiguo, ya en 1520 cuando Magallanes buscaba un paso entre el Atlántico y el Pacífico al pasar frente al extremo austral del continente denominó Tierra del Fuego a esa porción del territorio por los innumerables focos de fuego practicados por los aborígenes Onas. Algo similar ocurrió en el NE, en el Parque Chaqueño. Aquí los aborígenes quemaban sectores del bosque abierto de Prosopis y Schinopsis para espantar a los animales y cazarlos en la periferia del incendio; luego en esas «abras» se desarrollaba un pastizal denso donde se reunían los animales a pastar y eran fácilmente cazados
DOI: 10.6084/m9.figshare.17055566.v2
title: 202302_Data of the first paper

description: Canola class based on the canola ratio index (CRI), normalized difference yellowness index (NDYI), canola index (CI), and canola ﬂower index (CFI) in the middle and lower reaches of the Yangtze River, China.
DOI: 10.6084/m9.figshare.3561297.v1
title: Supplement 2. Evaluation of the approximation of the detection function and alternative implementations.

description: File List Detection_function_JAGS.txt (MD5: 007162c2064a70a7f698ac0d890409b4): Code snippets showing alternative implementations of the half-normal detection function. HNsimresults.csv (MD5: 80167ae96557e20304ebe21f686e9b2f): Tables with summary results of simulation study to investigate bias and confidence interval coverage of two implementations of the half-normal detection function. Description We present an alternative, less coarse, yet more time consuming approximation of the integral in Eq. 1 in the text, as well as the closed-form implementation of that integral for line transect sampling, as well as an assessment of the bias and confidence interval coverage of the two approximations for point surveys.
DOI: 10.6084/m9.figshare.8233574.v1
title: Unfiltered vcf file, Saccharomyces LOH project.

description: Variant call format of unfiltered SNP data from Saccharomyces cerevisiae clones evolved for 100 days.<br>Supports in prep publication: "High-resolution mapping of loss of heterozygosity in evolved yeast clones under divergent selection"<b></b>
DOI: 10.6084/m9.figshare.16685302.v1
title: Supplementary Material for: Differences in the Clinical Manifestations and Mortality of Systemic Lupus Erythematosus Onset in Children and Adults: A Systematic Review and Meta-Analysis

description: <b><i>Introduction:</i></b> The aim of this study was to assess the differences between childhood-onset and adult-onset systemic lupus erythematosus (cSLE and aSLE) for clinical manifestations and mortality using a meta-analytic approach. <b><i>Methods:</i></b> The PubMed, EMBASE, and the Cochrane library were searched for eligible studies published between January 1982 and March 2021. The odds ratio (OR) with 95% confidence interval was used to calculate the pooled effect estimates using the random-effects model. <b><i>Results:</i></b> Thirty-four studies involving 21,946 SLE patients were included. cSLE was associated with an increased risk of malar rash (OR: 1.64; <i>p</i> &lt; 0.001), ulcers/mucocutaneous involvement (OR: 1.22; <i>p</i> = 0.039), general neurological involvement (OR: 1.52; <i>p</i> &lt; 0.001), seizures (OR: 1.92; <i>p</i> &lt; 0.001), general renal involvement (OR: 2.08; <i>p</i> &lt; 0.001), proteinuria (OR: 1.35; <i>p</i> = 0.015), urinary cellular casts (OR: 1.67; <i>p</i> = 0.047), fever (OR: 2.31; <i>p</i> &lt; 0.001), anemia (OR: 1.91; <i>p</i> &lt; 0.001), thrombocytopenia (OR: 1.41; <i>p</i> &lt; 0.001), leucopenia (OR: 1.57; <i>p</i> = 0.017), lymphadenopathy (OR: 2.40; <i>p</i> &lt; 0.001), and cutaneous vasculitis (OR: 1.72; <i>p</i> = 0.001) as compared with aSLE. Moreover, cSLE versus aSLE was associated with a reduced risk of articular manifestations (OR: 0.63; <i>p</i> = 0.001), pulmonary involvement (OR: 0.54; <i>p</i> = 0.001), and pleuritis (OR: 0.61; <i>p</i> &lt; 0.001). There were no significant differences between cSLE and aSLE for mortality risk (OR: 1.20; <i>p</i> = 0.203). <b><i>Conclusion:</i></b> We found that certain clinical manifestations of SLE are different in cSLE and aSLE. Moreover, the mortality risk of cSLE and aSLE was not significantly different.
DOI: 10.6084/m9.figshare.19221258.v4
title: Supplementary Material for: Education-Based Cutoffs for Cognitive Screening of Alzheimer’s Disease

description: <b><i>Introduction:</i></b> The educational background and size of the elderly population are undergoing significant changes in Finland during the 2020s. A similar process is likely to occur also in several European countries. For cognitive screening of early Alzheimer’s disease (AD), using outdated norms and cutoff scores may negatively affect clinical accuracy. The aim of the present study was to examine the effects of education, age, and gender on the Consortium to Establish a Registry for Alzheimer’s Disease neuropsychological battery (CERAD-nb) in a large register-based, clinical sample of patients with mild AD and nondemented at-risk persons from the general population (controls) and to examine whether corrected cutoff scores would increase the accuracy of differentiation between the 2 groups. <b><i>Methods:</i></b> CERAD-nb scores were obtained from AD patients (<i>n</i> = 389, 58% women, mean age 74.0 years) and from controls (<i>n</i> = 1,980, 52% women, mean age 68.5 years). The differences in CERAD-nb performance were evaluated by univariate GLM. Differentiation between the 2 groups was evaluated using a receiver operating characteristic (ROC) curve, where a larger area under the ROC curve represents better discrimination. Youden’s J was calculated for the overall performance and accuracy of each of the measures. <b><i>Results:</i></b> Of the demographic factors, education was the strongest predictor of CERAD-nb performance, explaining more variation than age or gender in both the AD patients and the controls. Education corrected cutoff scores had better diagnostic accuracy in discriminating between the AD patients and controls than existing uncorrected scores. The highest level of discrimination between the 2 groups overall was found for two CERAD-nb total scores. <b><i>Conclusions:</i></b> Education-corrected cutoff scores were superior to uncorrected scores in differentiating between controls and AD patients especially for the highest level of education and should therefore be used in clinical cognitive screening, also as the proportion of the educated elderly is increasing substantially during the 2020s. Our results also indicate that total scores of the CERAD-nb are better at discriminating AD patients from controls than any single subtest score. A digital tool for calculating the total scores and comparing education-based cutoffs would increase the efficiency and usability of the test.
DOI: 10.17632/cb2r6hv72b
title: Synthetic mobile device data

description: This repository contains two synthetic mobile device datasets, one for GPS location records ("input_case1_v2.csv") and the other for cellular location records ("input_case2_v2.csv"). The two datasets are stored in CSV files. In each CSV file, there are 12 data fields, explained in the "Dictionary.docx" file. The two datasets contain the location records for 582 individual mobile devices for a month. The GPS dataset ("input_case1_v2.csv") contains 668,939 location records, and the cellular dataset ("input_case2_v2.csv") contains 61,390 location records. Using the synthetic mobile data generation method developed by Chen et al. (2014), the two datasets are generated based on two real-world data sources. The first one is mobile app data, which comes from people using location-aware mobile apps. The mobile app data encompasses both GPS and cellular data, and covers the month of March in 2019 in the central Puget Sound region. It includes 582 individual mobile device users. The second data source is household travel survey data. It covers the month of March in 2017 in the central Puget Sound region, and includes 582 survey respondents. The 582 (mobile device) users and the 582 survey respondents are randomly linked. The visited locations in the household travel survey are viewed as the ground-truth stays. Four fields of information from the mobile app data are preserved in the synthetic location records: the number of location records, and the user ID (anonymized), timestamp of each location records, and location accuracy associated with a record. If the timestamp of a location record falls within the duration of a ground-truth stay, the location record will be associated to the stay. The latitudes and longitudes of synthetic location records are generated such that their spatial distribution is the same as that from the mobile app data for a given user on a given day. The spatial distribution is measured by the distance and angle from a location record to the corresponding stay. Methods to infer stays from the mobile data is described in Wang et al., (2019), which was developed using the method developed in (Chen et al. 2014). For synthetic location records not associated to any (ground-truth) stay, their locations are random deviates from locations evenly distributed on the straight line connecting the last and the next stays, as described in Chen et al. (2014).
DOI: 10.6084/m9.figshare.12420968.v3
title: Benchmarking atlas-level data integration in single-cell genomics - integration task datasets (Immune, lung, and pancreas)

description: Pancreas, human immune cell, and human and mouse immune cell integration tasks from the manuscript "Benchmarking atlas-level data integration in single-cell genomics". <br><br>These datasets were aggregated from public datasets, cell annotations were harmonized or reannotated, and the data was consistently preprocessed using scran pooling and log+1 transformation. In the immune cell datasets an erythrocyte development trajectory was also annotated. Details on dataset preprocessing can be found in the paper and in the accompanying Github at https://www.github.com/theislab/scib.<br><br>Please cite the paper and the papers the individual datasets were aggregated from when using this data.<br><br>Note: the "complexBatch" version of the pancreas data was used in the paper. This version contains a higher resolution batch covariate and all batches were normaled jointly.<br>
DOI: 10.6084/m9.figshare.c.3739985_d2.v1
title: Additional file 2: of Transcriptomic profiling of two Pak Choi varieties with contrasting anthocyanin contents provides an insight into structural and regulatory genes in anthocyanin biosynthetic pathway

description: Differentially expressed genes (DEGs) between the two Pak Choi varieties. (XLSX 256 kb)
DOI: 10.6084/m9.figshare.1226682.v1
title: Metabolic reprogramming in mutant IDH1 glioma cells

description: Background: Mutations in isocitrate dehydrogenase (IDH) 1 have been reported in over 70% of low-grade gliomas and secondary glioblastomas. IDH1 is the enzyme that catalyzes the oxidative decarboxylation of isocitrate to α-ketoglutarate while mutant IDH1 catalyzes the conversion of α-ketoglutarate into 2-hydroxyglutarate. These mutations are associated with the accumulation of 2-hydroxyglutarate within the tumor and are believed to be one of the earliest events in the development of low-grade gliomas. The goal of this work was to determine whether the IDH1 mutation leads to additional magnetic resonance spectroscopy (MRS)–detectable changes in the cellular metabolome. Methods: Two genetically engineered cell models were investigated, a U87-based model and an E6/E7/hTERT immortalized normal human astrocyte (NHA)-based model. For both models, wild-type IDH1 cells were generated by transduction with a lentiviral vector coding for the wild-type IDH1 gene while mutant IDH1 cells were generated by transduction with a lentiviral vector coding for the R132H IDH1 mutant gene. Metabolites were extracted from the cells using the dual-phase extraction method and analyzed by 1H-MRS. Principal Component Analysis was used to analyze the MRS data. Results: Principal Component Analysis clearly discriminated between wild-type and mutant IDH1 cells. Analysis of the loading plots revealed significant metabolic changes associated with the IDH1 mutation. Specifically, a significant drop in the concentration of glutamate, lactate and phosphocholine as well as the expected elevation in 2-hydroxyglutarate were observed in mutant IDH1 cells when compared to their wild-type counterparts. Conclusion: The IDH1 mutation leads to several, potentially translatable MRS-detectable metabolic changes beyond the production of 2-hydroxyglutarate.
DOI: 10.6084/m9.figshare.1230165.v1
title: Ecology Lab 4

description: Ecology Lab Hypothesis: If density and sunlight affect the dbh of the tree, then the dbh of the tree will increase as density and sunlight increases, because more sunlight allows for better growth of tree, and high-density displays a lot of resource availability. Predictions: As sunlight increases the dbh of the tree will increase. As density increases the dbh of the tree will increase. As sunlight and density increases the dbh of the tree will increase. Method: The experiment will be done in Woodlands at York University. The first Maple tree will be chosen randomly by starting at a random point and moving 10 steps north, and 5 steps east. The first Maple tree in the vicinity will be the target. We will measure the dbh of the tree, and then make a 10m radius with the maple tree in the middle and count all the trees that are 10 ft and higher within the radius. To measure the sunlight we will use our picture frame of 10 cm by15 cm and stand with our back to the tree, and look upwards, and calculate the percentage of light coming through. The next tree will be chosen by going to the edge of our 10 m radius in the North East direction, and then taking 10 steps north and 5 steps east and then chose the next maple tree nearby. The total number of maple trees being surveyed will be 35 giving a good idea if dbh is affected by sunlight and density.
DOI: 10.6084/m9.figshare.104602.v2
title: Model of the Beta3 Subunit of Integrin alphaIIb/beta3

description: <strong>Structure model of the beta3 subunit of integrin alphaIIb/beta3</strong>.Building process is detailled in the Materials & Methods section of paper <em>Modeling and Molecular Dynamics of HPA-1a and -1b Polymorphisms: Effects on the Structure of the β3 Subunit of the αIIbβ3 Integrin</em> (PLOS ONE, 7(11): e47304, 2012)
DOI: 10.6084/m9.figshare.5947447.v2
title: Electronic Supplementary Materials Online Resource 5, Motion files

description: Motion files of medaka fish swimming saved in CSV format, and converted into BVH format.<br>When using the coordinate files, please cite our paper (1,2) and figshare doi (3).<br><br>1)<br> Nakayasu T and Watanabe E (2014) Biological motion stimuli are attractive to medaka fish. Animal Cognition 17, 559-575. https://doi.org/10.1007/s10071-013-0687-y<br><br>2) <br>Nakayasu T, Yasugi M, Shiraishi S, Uchida S, and Watanabe E (2017) Three-dimensional computer graphic animations for studying social approach behaviour in medaka fish: Effects of systematic manipulation of morphological and motion cues. PLoS ONE 12(4): e0175059. https://doi.org/10.1371/journal.pone.0175059.<br><br>3)<br>https://doi.org/10.6084/m9.figshare.5947447<br>
DOI: 10.6084/m9.figshare.25429780.v3
title: Figure 3-6 source data for "Dynamic Mechanisms That Couple the Brain and Breathing to the External Environment"

description: This repository contains the source data for figures 3,4,5 and 6 from the manuscript entitled "Dynamic Mechanisms That Couple the Brain and Breathing to the External Environment" Written by Josh Goheen, Angelika Wolman, Lorenzo Lucherini Angeletti, Annemarie Wolff, John A.E. Anderson and Georg Northoff
DOI: 10.6084/m9.figshare.13708318.v1
title: Assessing the Potential Distributions of the Invasive Mosquito Vector Aedes albopictus and Its Natural Wolbachia Infections in México

description: This dataset presents the occurrence records of the mosquito vector <i>Aedes albopictus</i> and the natural <i>Wolbachia</i> infections from <i>Ae. albopictus </i>populations used in the analysis published in the Journal Insects. Further details on the article citation will be available once the article is published.
DOI: 10.6084/m9.figshare.c.3782165_d1.v1
title: Additional file 1: of Prenatal listening to songs composed for pregnancy and symptoms of anxiety and depression: a pilot study

description: Dataset: EPDS, State Anxiety and Trait Anxiety Scores at Baseline and 12 weeks in the control and music groups.
DOI: 10.17632/5h86vnxw68
title: Energy Consumption Dataset For Smart Homes

description: This is a generated data for smart homes energy consumption and production. the data generated for 20, 50, 100 and 200 homes. Also, there is a dataset for 50 homes that is based on north Saudi Arabia weather. the data includes the energy production and energy consumption as well as the transactions. it could be used for simulating the energy prediction of smart homes as well as the peer to peer transactions. You may use the transactions for examining security algorithms for peer to peer transactions.
DOI: 10.17632/gcsk6p8gp8
title: 20220930Effects of Intercropping Pandanus amaryllifolius on Soil Properties and Microbial Community Composition in Areca catechu Plantation

description: Effects of Areca catechu and Pandanus amaryllifolius intercropping on soil environmental factors and soil microbial community composition
DOI: 10.17632/st7p328ktd
title: Certified Nursing Assistant Professional Fulfillment and Need for Continuing Education

description: The certified Nursing Assistant survey includes the Professional Fulfillment Index, burnout, job satisfaction, and the need for continuing education.