cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/k7zf8893x2.3
title: Safety and immunogenicity of SARS-CoV-2 self-amplifying RNA vaccine expressing anchored RBD: a randomised, observer-blind, phase 1 study, Akahata et al.

description: VLPCOV-01 is a lipid nanoparticle-encapsulated self-amplifying RNA (saRNA) vaccine that expresses a membrane-anchored receptor-binding domain (RBD) derived from the SARS-CoV-2 spike protein. A phase 1 study of VLPCOV-01 is conducted (jRCT2051210164). Participants who had completed two doses of the BNT162b2 mRNA vaccine previously are randomised to receive one intramuscular vaccination of 0·3, 1·0, or 3·0 µg VLPCOV-01, 30 µg BNT162b2, or placebo. No serious adverse events have been reported. VLPCOV-01 induces robust IgG titres against RBD protein that are maintained up to 26 weeks in non-elderly participants, with geometric means ranging from 5037 (95% CI 1,272–19,940) at 0·3 µg to 12,873 (95% CI 937–17,686) at 3 µg, in comparison to 3,166 (95% CI 1,619–6,191) with 30 µg BNT162b2. Neutralising antibody titres against all variants of SARS-CoV-2 tested are induced. VLPCOV-01 is immunogenic following low dose administration. These findings support the potential for saRNA as a vaccine platform.
DOI: 10.17632/82dpxxvdgx.1
title: NCD Dataset

description: This dataset was collected from 8 hospitals in Bangladesh. The respondents were patients suffering from end-stage kidney disease who utilized dialysis treatment and cancer patients who utilized radiotherapy or chemotherapy treatments. Data was collected on sociodemographic variables, economic variables, as well as health-related indicators.
DOI: 10.17632/y53p4nhwrk.1
title: Measurements and calculations for "Advantages of dual CO2 & O2 adsorption model for assessment of micropore development in biochar during two-stage gasification"

description: Dataset related to the paper "Advantages of dual CO2 & O2 adsorption model for assessment of micropore development in biochar during two-stage gasification".
Gas adsorption measurement files (.smp) and the results of the pore size distribution (PSD) calculations (.xlsx) performed with SAIEUS 3.5 software.
DOI: 10.17632/g2y3f9k2vg
title: LDHU3_19.1330

description: Mitochondrial carrier protein | MCP7; Leishmania donovani (HU3 strain)
DOI: 10.17632/g2y3f9k2vg.1
title: LDHU3_19.1330

description: Mitochondrial carrier protein | MCP7; Leishmania donovani (HU3 strain)
DOI: 10.2907/lfs1983-2023
title: EU - Labour Force Survey microdata 1983-2023, release 2024
DOI: 10.17632/4r6ydm6vgs.3
title: Fruit-bats adjust their decision process according to environmental dynamics

description: Fruit-bats adjust their decision process according to environmental dynamics- data and code
DOI: 10.17632/x6dbxs822s.2
title: AIcon2abs Survey Data

description: Original data sources (Raw and processed ) from the pre-test/post-test questionaries of the article How do Machines learn. xlsx and pdf files are provided. Links for supplementary materials are also avaiable here.
DOI: 10.17632/mctr9ksk4r.1
title: PiN Modelling Data

description: Data for the CsI(Tl)-PiN photodiode microscintillator radioactivity detector model. 
Raw laboratory datasets used for calibration are provided as "PiN_XXX".
Data format: EventNumber, EventNumber, Time (s), Time (hs), ReferenceVoltage (ADC), ValleyVoltage (ADC)
PiN Model Data contains processed laboratory calibration and model points, schmitt trigger minimum data, and photodiode responsivity points used for interpolation.
The digitised scintillator emission spectrum is provided, also used for interpolation.
DOI: 10.17632/mctr9ksk4r.2
title: PiN Modelling Data

description: Data for the CsI(Tl)-PiN photodiode microscintillator radioactivity detector model. 
Raw laboratory datasets used for calibration are provided as "PiN_XXX".
Data format: EventNumber, EventNumber, Time (s), Time (hs), ReferenceVoltage (ADC), ValleyVoltage (ADC)
PiN Model Data contains processed laboratory calibration and model points, schmitt trigger minimum data, and photodiode responsivity points used for interpolation.
The digitised scintillator emission spectrum is provided, also used for interpolation.
S-Cs137-0deg.txt contains the spectrometer data where each channel is a new line, and each line contains the number of counts in that channel. 
As such, a calibration needs to be performed to align the counts to energy peaks.
DOI: 10.17632/8jsd4ds57k.1
title: Supplementary data for the article: Study of Arsenophonus symbionts in Hippoboscidae

description: Alignments:
1. Arsenophonus matrix - concatenated matrix of 57 ortholog sequences (AA) extracted from all available Arsenophonus proteomes (analyzed by PhyML, PhyloBayes and IQ-TREE2) in a fasta format
2. Host mitochondrial matrix - concatenated matrix of 12 mitochondrial genes (NA) extracted from 12 mitochondrial genomes of hippoboscids (analyzed by IQ-TREE2) in a fasta format
3. Host COI matrix - phylogenetic matrix of COI mitochondrial gene (NA) of 63 taxa of hippoboscids (analyzed by IQ-TREE2) in a fasta format

Phylogenetic trees folder:
Phylogenetic trees generated by PhyML, PhyloBayes and IQ-TREE2 in a newick format.

Annotations folder:
Annotations of the complete genomes and genome drafts for the the newly described Arsenophonus symbionts of hippoboscids in gbk format.

Detailed description of used methods can be found in the Materials and Methods section.
DOI: 10.18150/ytfrpc
title: Three-layered composite scintillator based on the epitaxial structures of YAG and LuAG garnets doped with Ce3+ and Sc3+ impurities

description: In this work, we have proposed new types of three layered composite scintillators for simultaneous registration of the different components of ionization radiation based on the epitaxial structures of LuAG and YAG garnets, doped with Ce3+ and Sc3+ ions. The samples of such composite scintillators, containing YAG:Ce and LuAG:Ce single crystalline films with different thicknesses and LuAG:Sc single crystal substrates were grown using the Liquid Phase Epitaxy method from melt-solutions based on PbO-B2O3 fluxes. The scintillation properties of proposed composites YAG:Ce film/LuAG:Sc film/LuAG:Ce crystal and YAG:Ce film/LuAG:Ce film/LuAG:Sc crystal were investigated under excitation by radiation of α–particles of 239Pu source; b-particles of 90Sr sources and γ-rays of 137Cs source. Considering the properties of the mentioned composite scintillators, special attention was paid to the ability of simultaneous separation of the different components of mixed ionizing radiation containing mentioned particles and quanta using scintillation decay kinetics. The differences in the scintillation decay curves under α– and b- particle and γ-rays excitations were characterized by the Figure-of-Merit (FOM) values at different scintillation decay intensity levels (1/e, 0.1, 0.05, 0.01).
DOI: 10.17632/wfhwj6x4h6.2
title: LSTM-Attention Mechanism

description: The dataset comprises recordings of seven activities that were captured using Raspberry Pi (RPi) devices. Each activity was captured using 64 subcarriers, which refer to specific frequency components within the wireless signal. The dataset includes 300 packets, representing multiple instances of each activity.
DOI: 10.21227/yy22-th79
title: Vicon 3d motion capture walker gait

description: This dataset comprises a total of 844 medical records collected from neurological patients aged 19 to 91 at Chungnam National University Hospital using the Vicon Motion Capture System between 2013 and 2021. To ensure consistency in the study, records lacking temporal parameters, missing age or gender information, or without diagnoses of incomplete tetraplegia, incomplete paraplegia, or cauda equina syndrome (CES) were excluded.Patients with incomplete tetraplegia and incomplete paraplegia were selected based on ASIA classification grades C and D, indicating partial preservation of motor function. As a result, a final dataset of 214 records was extracted, consisting of 95 patients with incomplete tetraplegia, 68 with incomplete paraplegia, and 51 with CES, all containing age and gender information. This final dataset is organized in an Excel file, which is included within the zip file.Key temporal gait parameters, such as cadence, step length, double support, and walking speed, are included to facilitate machine learning analyses. The dataset aims to support research in gait analysis, neurological diagnostics, and machine learning applications, providing a noninvasive resource for early diagnosis and personalized treatment planning in neurological conditions.
DOI: 10.17632/yrzjjcpms8.1
title: building_21Mar2023

description: The dataset contains a sample of 406,745 English properties and weather data. The properties are from 5 areas: Brighton and Hove, Croydon, North Norfolk, East Staffordshire, Newcastle upon Tyne and Cornwall.

"EPC" contains the building archetypes in the Energy Performance Certificates of the properties.
"England_max_temperature" is the average daily maximum temperature by month for the period of years 1884-2021.
"England_mean_temperature" is the average daily mean temperature by month for the same period.
DOI: 10.15468/dl.6guag3
title: Occurrence Download

description: A dataset containing 127236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Protanthea simplex Carlgren, 1891, Sabella pavonina Savigny, 1822, Geodia barretti Bowerbank, 1858, Mycale lingua (Bowerbank, 1866), Polycarpa pomaria (Savigny, 1816), Spirobranchus triqueter (Linnaeus, 1758), Hydroides norvegica Gunnerus, 1768, Serpula vermicularis Linnaeus, 1767, Placostegus tridentatus (Fabricius, 1779), Protula tubularia (Montagu, 1803), Apomatus globifer Théel, 1878, Chitinopoma serrula (Stimpson, 1853), Filograna implexa Berkeley, 1835, Molgula citrina Alder & Hancock, 1848, Molgula complanata Alder & Hancock, 1870, Ascidia mentula Müller, 1776, Ascidia virginea Müller, 1776, Ascidia obliqua Alder, 1863, Ascidia callosa Stimpson, 1852, Ascidia prunum Müller, 1776, Ciona intestinalis (Linnaeus, 1767), Porania pulvillus (O.F.Müller, 1776), Acesta excavata (J.C.Fabricius, 1779), Urticina felina (Linnaeus, 1761), Urticina eques (Gosse, 1858), Bolocera tuediae (Johnston, 1832), Munida rugosa (Fabricius, 1775), Munida sarsi Huus, 1935, Phakellia ventilabrum (Johnston, 1842), Lithodes maja (Linnaeus, 1758), Caryophyllia smithii Stokes & Broderip, 1828, Alcyonium digitatum Linnaeus, 1758)",
 "Year 2000-2020"
 ]
}

 The dataset includes 127236 records from 342 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000271-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ztaxnq
title: Occurrence Download

description: A dataset containing 2687910 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is European Seabirds At Sea (ESAS)"
 ]
}

 The dataset includes 2687910 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000273-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48544/aacda44a-5e0b-4924-9c0d-a21cfbae94b2
title: De klas op orde met VR
DOI: 10.15468/dl.v969kj
title: Occurrence Download

description: A dataset containing 41407 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kinosternon Spix, 1824"
 ]
}

 The dataset includes 41407 records from 330 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000286-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28229036
title: Source data of displayed figures

description: ----
DOI: 10.6084/m9.figshare.28229036.v1
title: Source data of displayed figures

description: ----
DOI: 10.6084/m9.figshare.28183187
title: Stage one data

description: This represents the stage one quantitative data, providing an initial analysis based on measurable variables collected during the first phase of the research. The project investigated the extent to which homework affects secondary school adolescents’ leisure. This was important because the majority of research within this area focused on the effects of homework on adolescents’ academic development. This project explored the other, non-academic effects on leisure. An interpretivist sequential mixed methods research design was used to explore the actual versus expected time spent on homework, time spent on leisure and/or non-academic responsibilities. This was achieved from the perspective of the parents, adolescents, and teachers using questionnaire in stage one and then follow-up semi-structured interviews for parents and adolescents during stage two. Three schools participated in the project, each with distinct characteristics. School one, located in the Nottingham East constituency, became an academy in 2018 and was uninspected by Ofsted. It was larger than average, with higher-than-average numbers of minority ethnic students, English as an Additional Language (EAL) learners, and those eligible for free school meals. It had a homework policy for all year groups but no specified consequences for non-completion. School two, also in Nottingham East constituency, became an academy in 2012 and was rated good by Ofsted in 2017. It had below-average numbers of minority ethnic and EAL students and average free school meal eligibility but no homework policy. School three, based in Nottingham North, joined a multi-academy trust in 2012 and was rated good by Ofsted in 2018. It was ethnically diverse, with a significant proportion of EAL learners and high free school meal eligibility. Its homework policy was similar to school one's but included detention as a consequence for non-completion.The thesis can be accessed here: Exploring the effects of homework on secondary school adolescents’ leisure - IRep - Nottingham Trent University
DOI: 10.58053/mapbiomas/or5njt
title: MapBiomas 10 meter Beta Collection (2016 - 2022)

description: The MapBiomas 10 meter Beta Collection includes annual maps of land cover and land use for the period from 2016 to 2022 (period of availability of Sentinel-2 satellite images), allowing the inclusion of more detailed information in the mapping, for example, riparian forest in Permanent Preservation Areas (APP) along rivers and springs.
DOI: 10.17632/xykvwd3twg.1
title: Spatiotemporal variations of soil reactive nitrogen oxide fluxes across the anthropogenic landscape

description: Dataset contains 132 samples. Soil was sampled seasonally over one year, in November 2021, February 2022, May 2022, and August 2022. Soil was sampled from three locations, University of Warwick Wellesbourne Campus, Warwick Town, and Coventry City, corresponding to low (&lt;1000), mid (~35,000-52,000), and high (&gt;400,000) human population. Within these locations, samples were taken from four land-use types: agricultural, woodland, grass-dominated, and built. Here, we define ‘built’ soil as that found within one metre of human made structure such as buildings and car parks.There were three replicates of each land-use type and each location. Measured variables are potential NOy, NO and NOy - NO fluxes from intact 0-10cm soil cores, soil physicochemical properties, 16S rRNA amplicon sequencing, quantitative PCR of nitrification genes, net rates of nitrogen cycle processes, and concentrations of heavy metals measured with ICP-OES.
DOI: 10.17632/pxr4jbztsy.1
title: LINF_250014600

description: Leucine-rich repeats (LRR)-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/xsw3f6xt5j.1
title: LDHU3_06.1010

description: EAP3 | Exosome-associated protein 3; Leishmania donovani (HU3 strain)
DOI: 10.17632/tndnvsd9md.1
title: supporting data for A. bihariensis management plan (Ács et al., 2024)

description: Ács AR, Ion MC, Miok K, Laza AV, Pitic A, Robnik-Šikonja M, Pârvulescu L (2024) Threats assessment of the endemic Idle Crayfish (Austropotamobius bihariensis Pârvulescu, 2019): Lessons from long-term monitoring. Aquatic Conservation: Marine and Freshwater Ecosystems 34, e70033 (https://doi.org/10.1002/aqc.70033)
DOI: 10.17632/bm3ccjh7n2.1
title: LDHU3_06.0960

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/8c56gn7dn9.1
title: LINF_260015800

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/3j9v7hrkdz.1
title: LINF_270020700

description: Flagellum attachment zone protein 36 | FAZ36; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.28229027
title: Insights into trait-environment associations of communities and lineages: the case of dumbbell and kidney-shaped stomata

description: Stomata are the valves controlling the exchange of carbon dioxide and water vapor between plants and the atmosphere, and their evolution played a crucial role in enabling the colonization of terrestrial habitats and formation of terrestrial ecosystems 1. Stomata are made up of pairs of guard cells, which are kidney-shaped in most plants, and dumbbell-shaped in grasses, and flanked by specialized subsidiary cells. Several studies among small, diverse species showed that the opening and closing processes of these stomatal types differ.
DOI: 10.6084/m9.figshare.28229027.v1
title: Insights into trait-environment associations of communities and lineages: the case of dumbbell and kidney-shaped stomata

description: Stomata are the valves controlling the exchange of carbon dioxide and water vapor between plants and the atmosphere, and their evolution played a crucial role in enabling the colonization of terrestrial habitats and formation of terrestrial ecosystems 1. Stomata are made up of pairs of guard cells, which are kidney-shaped in most plants, and dumbbell-shaped in grasses, and flanked by specialized subsidiary cells. Several studies among small, diverse species showed that the opening and closing processes of these stomatal types differ.
DOI: 10.15468/dl.63rucc
title: Occurrence Download

description: A dataset containing 562 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corbicula fluminea (O.F.Müller, 1774)",
 "Country is Spain",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 562 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000290-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28227419
title: Oral cancer KAP study of oral health professionals in Addis Ababa, Ethiopia.xlsx

description: The study aimed at assessing the knowledge, attitudes and practices of oral health professionals about oral cancer. The study was approved by St.Paul's Hospital Millennium Medical College, Addis Ababa, Ethiopia.Cross-sectional analytical study design was employed. The study was conducted in Addis Ababa, which is the capital city of Ethiopia from December, 2022-February, 2023. A total of 370 oral health professionals were invited to participate in the study. The data were collected using self-administered, paper based, structured questionnaire.Of 370 invited oral health professionals, 278 responded (75% response rate).
DOI: 10.15468/dl.h4vhx3
title: Occurrence Download

description: A dataset containing 3682 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Connochaetes taurinus taurinus"
 ]
}

 The dataset includes 3682 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000291-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gcj696
title: Occurrence Download

description: A dataset containing 3110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lantana camara L.",
 "Year 2015-2025"
 ]
}

 The dataset includes 3110 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000292-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/thjzhzdpvc.1
title: Pairwise screening of viral-bacterial co-infections in vitro reveals molecular interaction points that affect pathogen proliferation and host cell viability

description: Abstract
The broadening of accessible methodologies has enabled mechanistic insights into single-pathogen infections, yet the molecular mechanisms underlying co-infections remain largely elusive, despite their clinical frequency and relevance, generally exacerbating symptom severity and fatality. Here, we describe an unbiased in vitro screening of pairwise co-infections in a murine macrophage model, quantifying pathogen proliferation and host cell death in parallel over time. The screen revealed that the majority of interactions are antagonistic for both metrics, highlighting general patterns depending on the pathogen virulence strategy. We subsequently decipher two distinct molecular interaction points: Firstly, murine Adenovirus 3 modifies ASC-dependent inflammasome responses in murine macrophages, altering host cell death and cytokine production, thereby impacting secondary Salmonella infection. Secondly, murine Adenovirus 2 infection triggers upregulation of Mprip, a crucial mediator of phagocytosis, which in turn causes increased Yersinia uptake, specifically in virus pre-infected bone-marrow-derived macrophages. This work therefore encompasses both a first-of-its-kind systematic assessment of host-pathogen-pathogen interactions, and mechanistic insight into molecular mediators during co-infection.

Content of the Repository
Raw screen runs -- Folder containing the source data (excel-format) for each plate-reader-based replicate of the screen
mAdV2_microscopy -- Folder containing the source images (.czi-format) for the siRNA-knockdown of Mprip and subsequent mAdV2-coinfection, inculding the quantification and analysis
mAdV3_microscopy -- Folder containing the source images (.czi-format) for ASC-speck counting after mAdV3-infection and inflammasome stimulation
Calculation_template.xlsx -- excel-based analysis sheet to calculate cell death, bacterial growth and viral growth from the plate reader data
Quality_Control.xlsx -- summary of replicate Pearson correlations and paired p-value testing to ensure reproducibility or decide for the necessity of a third replicate
Screen_overall_results.xlsx -- Summary of the results of the co-infection screen
Screen_static_summary.xlsx -- Quantification of the dynamic metrics for each of the screening runs (indicated by number and name)
Validation_Bliss_Scores.xlsx -- Summary of the validation of a subset of idetified interactions
mAdV2_FACS_quantification.xlsx -- quantified cell populations (uninfected, singly infected, doubly infected) after mAdV2-co-infection
mAdV2_SILAC.xlsx -- analyzed proteomics data for SILAC labeling during mAdV2 infection (for source files, see proteomeXchange)
mAdV3_SILAC.xlsx -- analyzed proteomics data for SILAC labeling during mAdV3 infection (for source files, see proteomeXchange)
mAdV3_inflammasome_activation.xlsx -- quantification of cell death, cytokine release and ASC-speck-positive cells upon mAdV3-infection and inflammasome stimulation
DOI: 10.17632/xwy7f3cwh2.1
title: LINF_270014500

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/gphfmy529f.1
title: Vasanthi Chandra sekar dataset on GCMS chromatogram, Insilico and toxicity analysis of Sargassum tenerrimum seaweed

description: GCMS chromatogram reveals the metabolites eluted in Gas chromatography. The Insilico analysis identifies the compounds by the use of extensive bio informatic tools. Online software such as Topkat was used to identify the toxic compounds and its potential activities of the Seaweed.