cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15482/usda.adc/28849928.v1
title: Data from: Electrical geophysical monitoring of subsurface solute transport in low-relief agricultural landscapes in response to a simulated major rainfall event

description: This dataset derives from an intensive field experiment that involved the use of time-lapse electrical resistivity imaging (ERI) to track the fate and transport of an injected salt tracer (KBr) in shallow groundwater during a simulated rainfall event (150 mm in 12 hours) in a ditch-drained field. The study was led by a team of researchers from Rutgers University, USDA-ARS, University of Delaware, Morehead State University, and Landcare Research. The research team conducted the experiment in a 1.5-ha agricultural field located on the University of Maryland Eastern Shore Research and Teaching Farm in Princess Anne, MD. The experiment lasted four days (06/20/2022 to 06/23/2022) and focused on a 150-m2 plot that was situated in the southwestern corner of the field near an open drainage ditch. Resources in this dataset include the following:<i>1D Vertical Electrical Sound</i><i> – vertical electrical resistivity tomography surveys; data were collected during the simulated rainfall event.</i><i>3D Time domain induced polarization survey</i><i> - time domain complex conductivity (TDIP) survey using the 96 Syscal Pro/Switch (Iris Instruments, France); data were collected as background data prior to the simulated rainfall event.</i><i>3D Timelapse electrical resistivity imaging</i><i> - electrical conductivity surveys using a radial array configuration with a total radial spread of ∼24 degrees; data were collected during and after the simulated rainfall event.</i><i>Ground penetrating radar</i><i> - ground penetrating radar was collected for Robinson et. al. 2020 and for Thompson et al. 2025; data were collected as background data prior to the simulated rainfall event.</i><i>Hydrologic data</i><i> - water levels in shallow wells measured by HOBO pressure transducers and time domain reflectometry (TDR) measurement of volumetric soil moisture content; data were collected during and after the simulated rainfall event.</i><i>Soil data</i><i> - soils data (texture) and geophysical measurements of soil cores for characterization of field site; data were collected as background data prior to the simulated rainfall event</i><i>Tracer data</i><i> – concentrations of Br- measured in ten multilevel groundwater samplers; data were collected after the simulated rainfall event</i>For more information about this dataset contact: Josh Thompson (jht51@scarletmail.rutgers.edu); Anthony Buda (anthony.buda@usda.gov); Amy Shober (ashober@udel.edu). Also see publications by Thompson et al. (2025) and Robinson et al. (2019) for detailed methodology.<br>
DOI: 10.5061/dryad.07390
title: Data from: Miconia clasei, a new species of Miconia sect. Calycodomatia (Miconieae: Melastomataceae) from the Sierra de Bahoruco, Dominican Republic and a closer look at species relationships in the Sandpaper clade

description: Recent collections in the Sierra de Bahoruco represent a previously
 undescribed species of Miconia sect. Calycodomatia from the Greater
 Antillean Sandpaper clade. We herein describe the new species as Miconia
 clasei, provide a phylogenetic analysis to determine close relatives, and
 compare it morphologically with its closest relatives and phenetically
 similar taxa. We also expand on previous analyses of the Sandpaper clade,
 including more individuals per species than previously analyzed, and
 include two taxa never before analyzed phylogenetically. We show that
 several species within the Sandpaper clade are indeed cladospecies, while
 others appear to be non-monophyletic.
description: DNA Alignment for
 Miconia claseiA concatenated nexus
 file of nrDNA (ITS & ETS) and plastid accD-psaI and
 psbK-psbIM_clasei_alignment.nexTree file of bootstrap searchTree file of bootstrap search for DNA data alignment (including ITS, ETS, accD-psaI, and psbK-psbI)M_clasei_phylogeny.nex
DOI: 10.5061/dryad.c75nn
title: Data from: Quantitative traits and mode of speciation in Martinique anoles

description: We investigate extensive quantitative trait variation (dewlap hue, colour
 pattern, dorsum hue, body proportions and scalation) in the Martinique
 anole across eight transects representing nascent parapatric ecological
 speciation, nascent allopatric speciation, and allopatric divergence
 without sufficient genetic structure to suggest speciation. Quantitative
 trait divergence can be extremely large between adjacent sets of
 populations, but with one exception this is associated with difference in
 habitat rather than past allopatry. Nascent ecological speciation shows
 the greatest level of quantitative trait divergence across all character
 sets including those implicated in natural, as well as sexual selection.
 The sole example of nascent allopatric speciation is associated with
 fairly strong quantitative trait diverge among most character sets, but
 not the set most implicated in natural (rather than sexual) selection. The
 role of sexual selection in ecological speciation is discussed, both in
 terms of female choice with assortative mating, and male-male competition
 with condition-dependant sexual signals.
description: Genotypes_MEC-12-0462Microsatellite genotypesEnvironmental_data_MEC-12-0462Environmental data for each siteMorpho_spectroMorphology and spectrometry dataMultivariate_results_MEC-12-0462Multivariate analyses resultsLineages_MEC-12-0462mtDNA lineage frequencies
DOI: 10.5061/dryad.c9p98
title: Data from: Performance trade-offs and ageing in the ‘world's greatest athletes’

description: The mechanistic foundations of performance trade-offs are clear: because
 body size and shape constrains movement, and muscles vary in strength and
 fibre type, certain physical traits should act in opposition with others
 (e.g. sprint versus endurance). Yet performance trade-offs are rarely
 detected, and traits are often positively correlated. A potential
 resolution to this conundrum is that within-individual performance
 trade-offs can be masked by among-individual variation in ‘quality’.
 Although there is a current debate on how to unambiguously define and
 account for quality, no previous studies have partitioned trait
 correlations at the within- and among-individual levels. Here, we evaluate
 performance trade-offs among and within 1369 elite athletes that performed
 in a total of 6418 combined-events competitions (decathlon and
 heptathlon). Controlling for age, experience and wind conditions, we
 detected strong trade-offs between groups of functionally similar events
 (throwing versus jumping versus running) occurring at the among-individual
 level. We further modelled individual (co)variation in age-related
 plasticity of performance and found previously unseen trade-offs in
 throwing versus running performance that manifest through ageing. Our
 results verify that human performance is limited by fundamental genetic,
 environmental and ageing constraints that preclude the simultaneous
 improvement of performance in multiple dimensions. Identifying these
 constraints is fundamental to understanding performance trade-offs and
 predicting the ageing of motor function.
description: DECATHLON_DATA_ALL_anonymousHEPTATHLON_DATA_ALL_anonymousCareau&Wilson_codes_with_ALL_DATA
DOI: 10.15468/dl.zxrw4k
title: Occurrence Download

description: A dataset containing 42525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Baccharis halimifolia"
 ]
}

 The dataset includes 42525 records from 472 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000507-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.hm74t
title: Data from: Rapid genetic adaptation precedes the spread of an exotic plant species

description: Human activities have increasingly introduced plant species far outside
 their native ranges under environmental conditions that can strongly
 differ from those originally met. Therefore, before spreading, and
 potentially causing ecological and economical damage, non native species
 may rapidly evolve. Evidence of genetically based adaptation during the
 process of becoming invasive is very scant however, which is due to the
 lack of knowledge regarding the historical genetic makeup of the
 introduced populations and the lack of genomic resource. Capitalizing on
 the availability of old non-native herbarium specimens, we examined
 frequency shifts in genic SNPs of the Pyrenean Rocket (Sisymbrium
 austriacum subsp. chrysanthum), comparing the (i) native, (ii) currently
 spreading non-native, and (iii) historically introduced gene pool. Results
 show strong divergence in flowering time genes during the establishment
 phase, indicating that rapid genetic adaptation preceded the spread of
 this species and possibly assisted in overcoming environmental
 constraints.
description: SNPdataSisymbriumaustriacumData resulting from SNP genotyping of Sisymbrium austriacum subsp. chrysanthum individuals collected from twelve and eleven native and non-native locations, respectively. Individuals were succesfully genotyped (missingness&lt;10%) on 209 polymorphic unambiguous loci using KASPar technology. he SNP labels are the locus identifiers (AGI codes) of A. thaliana homologues according to The Arabidopsis Information Resource nomenclature (TAIR; http://www.arabidopsis.org). SNPs were discovered using paired end RADSeq (see Vandepitte et al. 2013, Molecular Ecology Resources for details).The file also includes the genotypes of old, dated non-native herbarium specimens (old: &lt;1878; inter: 1878-1905 and young: 1906-1955). A=1, C=2, T=3, G=4snpdatamd10.xlsxGOsannotatedallattemptedSNPsFile summarizing the annotation (A. thaliana chromosome position, gene Tair ID and associated Gene Ontology terms) and ensemble results of all 300 SNP attempted in Sisymbrium austriacum.coordinatesLatitude and longitude data of the 23 analyzed Sisymbrium populations
DOI: 10.7910/dvn/kzao3g
title: HF Data for: Ionospheric Effects on Maximum Usable Frequency for1 a Cross-Auroral and a Polar Cap HF Radio Link

description: HF radio receiver data used in the paper: Climatology of Maximum Usable Frequency at High Latitudes. OTT-ALE_HF_Data.zip contains signal parameters for transmissions sent from Ottawa, ON, Canada to Alert, NU, Canada from January 2014 to June 2016. QAN-ALE_HF_Data.zip contains signal parameters for transmissions sent from Qaanaaq, Greenland to Alert, NU, Canada from July 2012 to September 2016. 
Individual Matlab save files are in the attached zip files, and are named according to date and frequency in the following scheme: ddAle_Ott_yyyymmdd_ffffffff.mat.
DOI: 10.5061/dryad.1k09d
title: Data from: Floral colours in a world without birds and bees: the plants of Macquarie Island

description: We studied biotically pollinated angiosperms on Macquarie Island, a remote
 site in the Southern Ocean with a predominately or exclusively dipteran
 pollinator fauna, in an effort to understand how flower colour affects
 community assembly. We compared a distinctive group of cream-green
 Macquarie Island flowers to the flora of likely source pools of immigrants
 and to a continental flora from a high latitude in the northern
 hemisphere. We used both dipteran and hymenopteran colour models and
 phylogenetically informed analyses to explore the chromatic component of
 community assembly. The species with cream-green flowers are very
 restricted in colour space models of both fly vision and bee vision and
 represent a distinct group that plays a very minor role in other
 communities. It is unlikely that such a community could form through
 random immigration from continental source pools. Our findings suggest
 that fly pollination has imposed a strong ecological filter on Macquarie
 Island, favouring floral colours that are rare in continental floras. This
 is one of the strongest demonstrations that plant–pollinator interactions
 play an important role in plant community assembly. Future work exploring
 colour choices by dipteran flower visitors would be valuable.
description: ShresthaM_etal_reflect_spectraFly and Bee colour coordinate plus raw reflectance spectra used in this paperShresthaM_etal.nexNexus file of phylogenetic treeShrestha_etal_NexusTree.PlantBiology.txt
DOI: 10.5061/dryad.mm46r
title: Data from: Evolution of virulence in heterogeneous host communities under multiple trade-offs

description: Many pathogens and parasites are transmitted through hosts that differ in
 species, sex, genotype, or immune status. In addition, virulence (here
 defined as disease-induced mortality) and transmission can vary during the
 infectious period within hosts of different state. Most models of
 virulence evolution assume that transmission and virulence are constant
 over the infectious period and that the host population is homogenous.
 Here, we examine a multi-species SIR model where transmission occurs
 within and between species, and transmission and virulence varied during
 the infectious period. This allows us to understand virulence evolution in
 a broader range of situations that characterize many emerging diseases.
 Because emerging pathogens are by definition new to their host
 populations, they should be expected to rapidly adapt after emergence. We
 illustrate these evolutionary effects using the framework of adaptive
 dynamics to examine how virulence evolves after emergence in response to
 the relative strength of selection on pathogen fitness and mutational
 variance for virulence. We illustrate the role of evolution by simulating
 adaptive walks to an evolutionarily stable virulence. We found that the
 magnitude of between-species transmission and the relative timing of
 transmission and mortality across species were of primary importance for
 determining the evolutionarily stable virulence.
description: two.species.essR text file for function used to find and characterize evolutionary singular points.AD.sim.functionR function for Adaptive Dynamics simulation in manuscript Figure 4.revised figures.8.19.11R file to make manuscript figures from data files.zip file of figure dataData shown in Figures 1 - 4 used by R file "revised figures.8.19.11.r". See ReadME file within this zip directory.Dryad.zip
DOI: 10.5061/dryad.b3d97
title: Data from: Independent effects of host and environment on the diversity of wood-inhabiting fungi

description: 1. Dead wood is a habitat for numerous fungal species, many of which are
 important agents of decomposition. Previous studies suggested that
 wood-inhabiting fungal communities are affected by climate, availability
 of dead wood in the surrounding landscape and characteristics of the
 colonized dead-wood object (e.g. host tree species). These findings
 indicate that different filters structure fungal communities at different
 scales, but how these factors individually drive fungal fruiting diversity
 on dead-wood objects is unknown. 2. We conducted an orthogonal experiment
 comprising 180 plots (0.1 ha) in a random block design and measured fungal
 fruit body richness and community composition on 720 dead-wood objects
 over the first four years of succession. The experiment allowed us to
 disentangle the effects of the host (beech and fir; logs and branches) and
 the environment (microclimate: sunny and shady plots; local dead wood:
 amount and heterogeneity of dead wood added to plot). 3. Variance
 partitioning revealed that the host was more important than the
 environment for the diversity of wood-inhabiting fungi. A more detailed
 model revealed that host tree species had the highest independent effect
 on richness and community composition of fruiting species of fungi. Host
 size had significant but low independent effects on richness and community
 composition of fruiting species. Canopy openness significantly affected
 the community composition of fruiting species. By contrast, neither local
 amount nor heterogeneity of dead wood significantly affected the fungal
 diversity measures. 4. Synthesis: Our study identified host tree species
 as a more important driver of the diversity of wood-inhabiting fungi than
 the environment, which suggests a host-centred filter of this diversity in
 the early phase of the decomposition process. For the conservation of
 wood-inhabiting fungi, a high variety of host species in various
 microclimates is more important than the availability of dead wood at the
 stand level.
description: JoE_Krah2018_richness_dataSpecies number and environmental variables.JoE_Krah2018_community_dataCommunity matrix and environmental variables.
DOI: 10.5061/dryad.2vk30
title: Data from: Conservation phylogeography: does historical diversity contribute to regional vulnerability in European tree frogs (Hyla arborea)

description: Documenting and preserving the genetic diversity of populations, which
 conditions their long-term survival, has become a major issue in
 conservation biology. The loss of diversity often documented in declining
 populations is usually assumed to result from human disturbances; however,
 historical biogeographic events, otherwise known to strongly impact
 diversity, are rarely considered in this context. We apply a multi-locus
 phylogeographic study to investigate the late-Quaternary history of a tree
 frog (Hyla arborea) with declining populations in the northern and western
 part of its distribution range. Mitochondrial and nuclear polymorphisms
 reveal high genetic diversity in the Balkan Peninsula, with a spatial
 structure molded by the last glaciations. While two of the main refugial
 lineages remained limited to the Balkans (Adriatic coast, southern
 Balkans), a third one expanded to recolonize Northern and Western Europe,
 loosing much of its diversity in the process. Our findings show that
 mobile and a priori homogeneous taxa may also display substructure within
 glacial refugia (“refugia within refugia”), and emphasize the importance
 of the Balkans as a major European biodiversity center. Moreover, the
 distribution of diversity roughly coincides with regional conservation
 situations, consistent with the idea that historically impoverished
 genetic diversity may interact with anthropogenic disturbances, and
 increase the vulnerability of populations. Phylogeographic models seem
 important to fully appreciate the risks of local declines and inform
 conservation strategies.
description: Microsatellite genotypes
 of 750 tree frogs from 30 markersThe first column
 designates sample labels, and the second the population numbers (as in the
 figures of the paper). Null alleles appears as "0" and missing
 data as "NA". Genotypes were scored with GeneMapper 4.0 and null
 alleles detected with Microchecker (see the paper for
 details)DufresnesEtAl_MolEcol_phylogeoHarborea_microsats.xlsxSequence alignment of cytochrome-bThis includes 238 samples of H. arborea and 2 samples of H. orientalisDufresnesEtAl_MolEcol_phylogeoHarborea_cyt-b.fasSequence alignment of the D-loopThis includes 238 samples from H. arborea and 2 samples from H. orientalisDufresnesEtAl_MolEcol_phylogeoHarborea_D-loop.fasSequence alignment of rag-1This includes 108 individuals of H. arborea, with two alleles for each individual (noted 1 and 2) for a total of 216 sequences. Haplotypes were reconstructed with the Phase algorithm of DNAsp. See the paper for details. The alignment also includes published sequences of four other Hylid species.DufresnesEtAl_MolEcol_phylogeoHarborea_rag-1.fas
DOI: 10.5061/dryad.1h8402s6
title: Data from: Relationships between spatio-temporal environmental and genetic variation reveal an important influence of exogenous selection in a pupfish hybrid zone

description: The importance of exogenous selection in a natural hybrid zone between the
 pupfishes Cyprinodon atrorus and C. bifasciatus was tested via
 spatio-temporal analyses of environmental and genetic change over winter,
 spring, and summer for three consecutive years. A critical influence of
 exogenous selection on hybrid zone regulation was demonstrated by a
 significant relationship between environmental (salinity and temperature)
 and genetic (three diagnostic nuDNA loci) variation over space and time
 (seasons) in the Rio Churince system, Cuatro Ciénegas, Mexico. At sites
 environmentally more similar to parental habitats, the genetic composition
 of hybrids was stable and similar to the resident parental species,
 whereas complex admixtures of parental and hybrid genotypic classes
 characterized intermediate environments, as did the greatest change in
 allelic and genotypic frequencies across seasons. Within hybrids across
 the entire Rio Churince system, seasonal changes in allelic and genotypic
 frequencies were consistent with results from previous reciprocal
 transplant experiments, which showed C. bifasciatus to suffer high
 mortality (75%) when exposed to the habitat of C. atrorus in winter
 (extreme temperature lows and variability) and summer (abrupt salinity
 change and extreme temperature lows and variability). Though unconfirmed,
 the distributional limits of C. atrorus and C. atrorus-like hybrids appear
 to be governed by similar constraints (predation or competition). A
 crucial link was also established between contemporary exogenous selection
 in a hybrid zone between these species and previous demonstration of
 long-term evolutionary significance of environmental variation and
 introgression on the phenotypic diversification Cuatro Ciénegas
 Cyprinodon.
description: CC Pupfish
 GenotypesList of genotypes for
 Cyprinodon atrorus, C. bifasciatus and their hybrids. Data presented by
 collection, site, locus, and individual, with and their hybrids. Alleles
 specific to C. atrorus are coded as (1) and those specific to C.
 bifasciatus as (2)Specific Conductance
 Carson et al ChurinceSpecific conductance for
 each site and seasonTemperature Carson et al
 ChurinceTemperature (degrees
 Celsius) for each site and collection
DOI: 10.5061/dryad.tv179
title: Data from: Perennial growth of hermatypic corals at Rottnest Island, Western Australia (32°S)

description: To assess the viability of high latitude environments as coral refugia, we
 report measurements of seasonal changes in seawater parameters
 (temperature, light, and carbonate chemistry) together with calcification
 rates for two coral species, Acropora yongei and Pocillopora damicornis
 from the southernmost geographical limit of these species at Salmon Bay,
 Rottnest Island (32°S) in Western Australia. Changes in buoyant weight
 were normalised to colony surface areas as determined from both X-ray
 computed tomography and geometric estimation. Extension rates for A.
 yongei averaged 51 ± 4 mm y−1 and were comparable to rates reported for
 Acroporid coral at other tropical and high latitude locations. Mean rates
 of calcification for both A. yongei and P. damicornis in winter were
 comparable to both the preceding and following summers despite a mean
 seasonal temperature range of ∼6 °C (18.2°–24.3 °C) and more than two-fold
 changes in the intensity of downwelling light. Seasonal calcification
 rates for A. yongei (1.31–2.02 mg CaCO3 cm−2 d−1) and P. damicornis
 (0.34–0.90 mg CaCO3 cm−2 d−1) at Salmon Bay, Rottnest Island were
 comparable to rates from similar taxa in more tropical environments;
 however, they appeared to decline sharply once summer temperatures
 exceeded 23 °C. A coral bleaching event observed in December 2013 provided
 further evidence of how coral at Rottnest Island are still vulnerable to
 the deleterious effects of episodic warming despite its high latitude
 location. Thus, while corals at Rottnest Island can sustain robust
 year-round rates of coral growth, even over cool winter temperatures of
 18°–19 °C, there may be limits on the extent that such environments can
 provide refuge against the longer term impacts of anthropogenic climate
 change.
description: Data from Ross et al.,
 2015Data from: Ross CL,
 Falter JL, Schoepf V, McCulloch MT (2015) Perennial growth of hermatypic
 corals at Rottnest Island, Western Australia (32°S),
 PeerJData
 Ross et al., 2015.xlsx