cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4012389
title: Ontolex-lemon and TIAD versions of Apertium Macedonian-English dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: 2010-2012, Francis M. Tyers 2010, Jim O'Regan 2010, Trond Trosterud 2012-2013, Filip Petkovski 2012-2014, Kevin Brubeck Unhammer 2012, Anthony J. Bentley 2013, Lord_of_Life
DOI: 10.6084/m9.figshare.4519286.v2
title: week 3 -lidar

description: Light detection and ranging (Lidar) Remote sensing data for week 3 of class. The data are for the Lee Hill Area in Boulder, Colorado and include before and after terrain data.<br>
DOI: 10.6084/m9.figshare.4519223
title: Phase I Distribution-Free Analysis of Multivariate Data

description: In this study, a new distribution-free Phase I control chart for retrospectively monitoring multivariate data is developed. The suggested approach, based on the multivariate signed ranks, can be applied to individual or subgrouped data for detection of location shifts with an arbitrary pattern (e.g., isolated, transitory, sustained, progressive, etc.). The procedure is complemented with a LASSO-based post-signal diagnostic method for identification of the shifted variables. A simulation study shows that the method compares favorably with parametric control charts when the process is normally distributed, and largely outperforms other multivariate nonparametric control charts when the process distribution is skewed or heavy-tailed. An R package can be found in the supplementary material.
DOI: 10.6084/m9.figshare.4519223.v1
title: Phase I Distribution-Free Analysis of Multivariate Data

description: In this study, a new distribution-free Phase I control chart for retrospectively monitoring multivariate data is developed. The suggested approach, based on the multivariate signed ranks, can be applied to individual or subgrouped data for detection of location shifts with an arbitrary pattern (e.g., isolated, transitory, sustained, progressive, etc.). The procedure is complemented with a LASSO-based post-signal diagnostic method for identification of the shifted variables. A simulation study shows that the method compares favorably with parametric control charts when the process is normally distributed, and largely outperforms other multivariate nonparametric control charts when the process distribution is skewed or heavy-tailed. An R package can be found in the supplementary material.
DOI: 10.6084/m9.figshare.4519286.v4
title: Week 3 - Light Detection and Ranging - Remote Sensing

description: Light detection and ranging (Lidar) Remote sensing data for week 3 of class. The data are for the Lee Hill Area in Boulder, Colorado and include before and after terrain data.<br>
DOI: 10.6084/m9.figshare.4519286.v3
title: Week 3 - Light Detection and Ranging - Remote Sensing

description: Light detection and ranging (Lidar) Remote sensing data for week 3 of class. The data are for the Lee Hill Area in Boulder, Colorado and include before and after terrain data.<br>
DOI: 10.6084/m9.figshare.4519136
title: Growth and physiology of <i>Hopea odorata</i> planted within gaps in an acacia plantation acting as a nurse crop

description: <b><i>Background</i></b>: Mixtures of tropical acacia nurse crops and understorey native species have been established to aid forest restoration in Vietnam, but with partial success. Knowledge of physiological mechanisms underlying competitive interactions remains limited. <b><i>Aims:</i></b> To examine growth and physiological responses of <i>Hopea odorata</i>, a shade-tolerant dipterocarp, established within an <i>Acacia</i> hybrid (<i>Acacia mangium</i> × <i>Acacia auriculiformis</i>) nurse-crop plantation. <b><i>Methods:</i></b><i>H. odorata</i> seedlings were planted within three 22-m diameter gaps in a 3-year-old <i>Acacia</i> hybrid plantation in Central Vietnam. Growth and physiology responses to an environmental gradient in gaps were examined over 2 years. <b><i>Results:</i></b> Growth rate and maximum rates of photosynthesis and stomatal conductance of <i>H. odorata</i> saplings increased significantly with increases in relative daily incident photosynthetically active radiation from 24% at the gap perimeter (GP) to 61% at the gap centre. Leaf N, P, and chlorophyll concentration were unaffected by position in the gap. At the end of dry season, there were significant reductions in leaf water potential for saplings close to the GP suggesting interspecific competition for water. <b><i>Conclusions:</i></b> Despite naturally regenerating in shade, the strong ability of <i>H. odorata</i> to acclimate to high light environments suggests that its re-establishment on degraded sites, using <i>Acacia</i> hybrid as a nurse crop should be possible, provided that competition for light and water are managed.
DOI: 10.6084/m9.figshare.4519142
title: Low SNR in Diffusion MRI Models

description: Noise is a common issue for all magnetic resonance imaging (MRI) techniques such as diffusion MRI and obviously leads to variability of the estimates in any model describing the data. Increasing spatial resolution in MR experiments further diminishes the signal-to-noise ratio (SNR). However, with low SNR the expected signal deviates from the true value. Common modeling approaches therefore lead to a bias in estimated model parameters. Adjustments require an analysis of the data generating process and a characterization of the resulting distribution of the imaging data. We provide an adequate quasi-likelihood approach that employs these characteristics. We elaborate on the effects of typical data preprocessing and analyze the bias effects related to low SNR for the example of the diffusion tensor model in diffusion MRI. We then demonstrate the relevance of the problem using data from the Human Connectome Project. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.4519136.v1
title: Growth and physiology of <i>Hopea odorata</i> planted within gaps in an acacia plantation acting as a nurse crop

description: <b><i>Background</i></b>: Mixtures of tropical acacia nurse crops and understorey native species have been established to aid forest restoration in Vietnam, but with partial success. Knowledge of physiological mechanisms underlying competitive interactions remains limited. <b><i>Aims:</i></b> To examine growth and physiological responses of <i>Hopea odorata</i>, a shade-tolerant dipterocarp, established within an <i>Acacia</i> hybrid (<i>Acacia mangium</i> × <i>Acacia auriculiformis</i>) nurse-crop plantation. <b><i>Methods:</i></b><i>H. odorata</i> seedlings were planted within three 22-m diameter gaps in a 3-year-old <i>Acacia</i> hybrid plantation in Central Vietnam. Growth and physiology responses to an environmental gradient in gaps were examined over 2 years. <b><i>Results:</i></b> Growth rate and maximum rates of photosynthesis and stomatal conductance of <i>H. odorata</i> saplings increased significantly with increases in relative daily incident photosynthetically active radiation from 24% at the gap perimeter (GP) to 61% at the gap centre. Leaf N, P, and chlorophyll concentration were unaffected by position in the gap. At the end of dry season, there were significant reductions in leaf water potential for saplings close to the GP suggesting interspecific competition for water. <b><i>Conclusions:</i></b> Despite naturally regenerating in shade, the strong ability of <i>H. odorata</i> to acclimate to high light environments suggests that its re-establishment on degraded sites, using <i>Acacia</i> hybrid as a nurse crop should be possible, provided that competition for light and water are managed.
DOI: 10.6084/m9.figshare.4519142.v1
title: Low SNR in Diffusion MRI Models

description: Noise is a common issue for all magnetic resonance imaging (MRI) techniques such as diffusion MRI and obviously leads to variability of the estimates in any model describing the data. Increasing spatial resolution in MR experiments further diminishes the signal-to-noise ratio (SNR). However, with low SNR the expected signal deviates from the true value. Common modeling approaches therefore lead to a bias in estimated model parameters. Adjustments require an analysis of the data generating process and a characterization of the resulting distribution of the imaging data. We provide an adequate quasi-likelihood approach that employs these characteristics. We elaborate on the effects of typical data preprocessing and analyze the bias effects related to low SNR for the example of the diffusion tensor model in diffusion MRI. We then demonstrate the relevance of the problem using data from the Human Connectome Project. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.4519121
title: Increased blood levels of persistent organic pollutants (POP) in obese individuals after weight loss—A review

description: Lipophilic persistent organic pollutants (POP) are stored in adipose tissue. Following rapid weight loss such as when induced by bariatric surgery, an increased release of potential harmful lipophilic compounds into the blood circulation may occur. Weight reduction is recommended for overweight and obese individuals in order to decrease risk of weight-related health problems. However, in cases of significant weight reduction POP become mobilized chemicals and consequently may adversely affect health, including endocrine disruption. The objective of the present investigation was to estimate quantitatively the level of mobilization of POP following weight loss over time. According to literature search criteria, 17 studies were identified with 2061 participants. Data from 5 of the studies with 270 participants were used to assess the change in blood levels of POP in percent per kilogram weight loss. Weight loss in the included studies varied from 4.4 to 64.8 kg. In all studies, the majority of POP concentrations in blood were found to rise following weight reduction. Blood concentrations following weight reduction were elevated by 2–4% per kilogram weight loss for most POP examined. The increased POP levels were still elevated 12 mo after intervention. Most research in this field, including animal studies, is carried out on a single compound or group of selected compounds, not taking the “cocktail effect” into consideration. This does not reflect the true range of POP to which humans are actually exposed. Few chronic investigations have been published and, in particular, few studies were available that compared the increase in POP concentrations with clinical consequences as individuals lost weight. These limitations call for caution in interpreting results. The benefits of losing weight still far outweigh the potential adverse health risks. However, further studies are recommended to determine the clinical significance of increased blood levels of POPs following rapid and excessive weight loss, particularly for women attending weight reduction treatment before pregnancy.
DOI: 10.6084/m9.figshare.4519121.v1
title: Increased blood levels of persistent organic pollutants (POP) in obese individuals after weight loss—A review

description: Lipophilic persistent organic pollutants (POP) are stored in adipose tissue. Following rapid weight loss such as when induced by bariatric surgery, an increased release of potential harmful lipophilic compounds into the blood circulation may occur. Weight reduction is recommended for overweight and obese individuals in order to decrease risk of weight-related health problems. However, in cases of significant weight reduction POP become mobilized chemicals and consequently may adversely affect health, including endocrine disruption. The objective of the present investigation was to estimate quantitatively the level of mobilization of POP following weight loss over time. According to literature search criteria, 17 studies were identified with 2061 participants. Data from 5 of the studies with 270 participants were used to assess the change in blood levels of POP in percent per kilogram weight loss. Weight loss in the included studies varied from 4.4 to 64.8 kg. In all studies, the majority of POP concentrations in blood were found to rise following weight reduction. Blood concentrations following weight reduction were elevated by 2–4% per kilogram weight loss for most POP examined. The increased POP levels were still elevated 12 mo after intervention. Most research in this field, including animal studies, is carried out on a single compound or group of selected compounds, not taking the “cocktail effect” into consideration. This does not reflect the true range of POP to which humans are actually exposed. Few chronic investigations have been published and, in particular, few studies were available that compared the increase in POP concentrations with clinical consequences as individuals lost weight. These limitations call for caution in interpreting results. The benefits of losing weight still far outweigh the potential adverse health risks. However, further studies are recommended to determine the clinical significance of increased blood levels of POPs following rapid and excessive weight loss, particularly for women attending weight reduction treatment before pregnancy.
DOI: 10.6084/m9.figshare.4519100
title: Genetic Variation in FABP4 and Evaluation of Its Effects on Beef Cattle Fat Content

description: FABP4 is a protein primarily expressed in adipocytes and macrophages that plays a key role in fatty acid trafficking and lipid hydrolysis. <i>FABP4</i> gene polymorphisms have been associated with meat quality traits in cattle, mostly in Asian breeds under feedlot conditions. The objectives of this work were to characterize <i>FABP4</i> genetic variation in several worldwide cattle breeds and evaluate possible genotype effects on fat content in a pasture-fed crossbred (Angus-Hereford-Limousin) population. We re-sequenced 43 unrelated animals from nine cattle breeds (Angus, Brahman, Creole, Hereford, Holstein, Limousin, Nelore, Shorthorn, and Wagyu) and obtained 22 single nucleotide polymorphisms (SNPs) over 3,164 bp, including four novel polymorphisms. Haplotypes and linkage disequilibrium analyses showed a high variability. Five SNPs were selected to perform validation and association studies in our crossbred population. Four SNPs showed well-balanced allele frequencies (minor frequency &gt; 0.159), and three showed no significant deviations from Hardy-Weinberg proportions. SNPs showed significant effects on backfat thickness and fatty acid composition (P
DOI: 10.6084/m9.figshare.4519100.v1
title: Genetic Variation in FABP4 and Evaluation of Its Effects on Beef Cattle Fat Content

description: FABP4 is a protein primarily expressed in adipocytes and macrophages that plays a key role in fatty acid trafficking and lipid hydrolysis. <i>FABP4</i> gene polymorphisms have been associated with meat quality traits in cattle, mostly in Asian breeds under feedlot conditions. The objectives of this work were to characterize <i>FABP4</i> genetic variation in several worldwide cattle breeds and evaluate possible genotype effects on fat content in a pasture-fed crossbred (Angus-Hereford-Limousin) population. We re-sequenced 43 unrelated animals from nine cattle breeds (Angus, Brahman, Creole, Hereford, Holstein, Limousin, Nelore, Shorthorn, and Wagyu) and obtained 22 single nucleotide polymorphisms (SNPs) over 3,164 bp, including four novel polymorphisms. Haplotypes and linkage disequilibrium analyses showed a high variability. Five SNPs were selected to perform validation and association studies in our crossbred population. Four SNPs showed well-balanced allele frequencies (minor frequency &gt; 0.159), and three showed no significant deviations from Hardy-Weinberg proportions. SNPs showed significant effects on backfat thickness and fatty acid composition (P
DOI: 10.6084/m9.figshare.4519079
title: Advances in the systematics of the spider genus <i>Troglohyphantes</i> (Araneae, Linyphiidae)

description: With 128 described species and five subspecies, the spider genus <i>Troglohyphantes</i> (Araneae, Linyphiidae) is a remarkable example of species diversification in the subterranean environment. In this paper, we conducted a systematic revision of the <i>Troglohyphantes</i> species of the Italian Alps, with a special focus on the <i>Lucifuga</i> complex, including the description of two new species (<i>T. lucifer</i> sp. nov. and <i>T. apenninicus</i> n. sp.). In addition, we provided new diagnostic drawings of the holotype of <i>T. henroti</i> (<i>Henroti</i> complex) and established three new synonymies within the genus. The molecular analysis of the animal DNA barcode confirms the validity of this method of identification of the Alpine <i>Troglohyphantes</i> and provides additional support for the morphology based species complexes. Finally, we revised the known distribution range of additional <i>Troglohyphantes</i> species, as well as other poorly known alpine cave-dwelling spiders. <i>Troglohyphantes lucifer</i>http://www.zoobank.org/urn:lsid:zoobank.org:act:AB4B644A-D18A-4EB7-99E7-B5117AED5389 <i>Troglohyphantes apenninicus</i>http://www.zoobank.org/urn:lsid:zoobank.org:act:3C86E78E-7145-4F0C-803E-2A909201579C
DOI: 10.5281/zenodo.4012386
title: Ontolex-lemon and TIAD versions of Apertium Macedonian-Bulgarian dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: 2010-2013, Kevin Brubeck Unhammer 2010-2014, Francis M. Tyers 2010, Jim O'Regan 2010, Tihomir Rangelov 2011, Pminervini 2011, Trond Trosterud 2012, Anthony J. Bentley
DOI: 10.6084/m9.figshare.4519067
title: Domain boundaries around Orkney and Shetland Islands for hydrodynamic simulations.

description: Domain boundaries around Orkney and Shetland Islands for hydrodynamic simulations. Files used to generate mesh at 10.6084/m9.figshare.5350006.v1, using qmesh (www.qmesh.org)<br><br>For information on the GSHHS shorelines see Wessel, P., and W. H. F. Smith, A Global Self-consistent, Hierarchical, High-resolution Shoreline Database, J. Geophys. Res., 101, 8741-8743, 1996. (See also Reference links)<br>For more information on the GEBCO bathymetry data see https://www.bodc.ac.uk/data/hosted_data_systems/gebco_gridded_bathymetry_data/<br>The domain boundaries were constructed by the authors for "Efficient unstructured mesh generation for marine renewable energy applications", Renewable Energy, (https://doi.org/10.1016/j.renene.2017.09.058)<br>
DOI: 10.6084/m9.figshare.4519079.v1
title: Advances in the systematics of the spider genus <i>Troglohyphantes</i> (Araneae, Linyphiidae)

description: With 128 described species and five subspecies, the spider genus <i>Troglohyphantes</i> (Araneae, Linyphiidae) is a remarkable example of species diversification in the subterranean environment. In this paper, we conducted a systematic revision of the <i>Troglohyphantes</i> species of the Italian Alps, with a special focus on the <i>Lucifuga</i> complex, including the description of two new species (<i>T. lucifer</i> sp. nov. and <i>T. apenninicus</i> n. sp.). In addition, we provided new diagnostic drawings of the holotype of <i>T. henroti</i> (<i>Henroti</i> complex) and established three new synonymies within the genus. The molecular analysis of the animal DNA barcode confirms the validity of this method of identification of the Alpine <i>Troglohyphantes</i> and provides additional support for the morphology based species complexes. Finally, we revised the known distribution range of additional <i>Troglohyphantes</i> species, as well as other poorly known alpine cave-dwelling spiders. <i>Troglohyphantes lucifer</i>http://www.zoobank.org/urn:lsid:zoobank.org:act:AB4B644A-D18A-4EB7-99E7-B5117AED5389 <i>Troglohyphantes apenninicus</i>http://www.zoobank.org/urn:lsid:zoobank.org:act:3C86E78E-7145-4F0C-803E-2A909201579C
DOI: 10.6084/m9.figshare.4519061
title: Floral morphology, micromorphology and palinology of selected <b><i>Sedum s.l.</i></b> species (Crassulaceae)

description: <i>Sedum</i> L. (Crassulaceae) is a large and taxonomically difficult genus whose delimitation and classification are under debate. Due to the controversial results of previous cytological, morphological, and molecular studies, further investigations are needed in order to gain a shared taxonomy of the current recognized species clades. In the present paper, morphological and micromorphological features of 23 selected Mediterranean species of <i>Sedum s.l</i>. – collected from <i>exsiccata</i> or fresh specimens throughout Italy – were investigated, in order to provide additional data toward their classification above species level. In particular, the study focused on flower structure and morphology, floral epidermal surfaces and pollen morphology. The distribution pattern of the examined microcharacters across the species revealed a wide range of variation and different combinations of the single characters. NMDS analysis allowed individuating discrete groups that showed a general consistency with the current systematic delimitation of species groups. Our study also evidenced for the first time the wide morphological variability of nectaries and of the glandular <i>indumentum</i>, not previously investigated in detail. In addition, we proposed the combined use of floral diagrams and floral formulae as valuable tools in studying the variability of flower structure at genus level.
DOI: 10.6084/m9.figshare.4519067.v1
title: Domain boundaries around Orkney and Shetland Islands for hydrodynamic simulations.

description: Domain boundaries around Orkney and Shetland Islands for hydrodynamic simulations. Files used to generate mesh at 10.6084/m9.figshare.5350006.v1, using qmesh (www.qmesh.org)<br><br>For information on the GSHHS shorelines see Wessel, P., and W. H. F. Smith, A Global Self-consistent, Hierarchical, High-resolution Shoreline Database, J. Geophys. Res., 101, 8741-8743, 1996. (See also Reference links)<br>For more information on the GEBCO bathymetry data see https://www.bodc.ac.uk/data/hosted_data_systems/gebco_gridded_bathymetry_data/<br>The domain boundaries were constructed by the authors for "Efficient unstructured mesh generation for marine renewable energy applications", Renewable Energy, (https://doi.org/10.1016/j.renene.2017.09.058)<br>
DOI: 10.5281/zenodo.4012385
title: Ontolex-lemon and TIAD versions of Apertium Macedonian-Bulgarian dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: 2010-2013, Kevin Brubeck Unhammer 2010-2014, Francis M. Tyers 2010, Jim O'Regan 2010, Tihomir Rangelov 2011, Pminervini 2011, Trond Trosterud 2012, Anthony J. Bentley