cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.w9rwz5
title: Occurrence Download

description: A dataset containing 2119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-168.38155 27.36354,-112.13155 27.36354,-112.13155 49.86354,-168.38155 49.86354,-168.38155 27.36354))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anthidium manicatum (Linnaeus, 1758)"
 ]
}

 The dataset includes 2119 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026524-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d3hbaq
title: Occurrence Download

description: A dataset containing 470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orthotrichum rogeri Brid.",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 470 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026526-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13994463
title: BioTISR: F-actin (3D)

description: 3D F-actin data of BioTISR dataset

BioTISR is a biological image dataset for super-resolution microscopy, currently including 2D and 3D time-lapse image pairs of low-and-high resolution images of a variety of biology structures, aiming to provide a high-quality dataset of time-lapse biological SR images for the community to spark more developments of computational SR methods.

At present, 2D dataset includes five specimens (clathrin-coated pits, lysosomes, outer mitochondrial membrane, microtubules, and F-actin) acquired with the GI/TIRF-SIM mode and nonlinear SIM mode of our Multi-SIM system, and 3D data includes three specimens (outer mitochondrial membrane, microtubules, and F-actin) acquired with 3D-SIM mode of the Multi-SIM system. For each type of specimen and each imaging modality, we acquired the raw data from at least 50 distinct regions-of-interest (ROI). For each ROI, we acquired two (3D data) or three (2D data) groups of N-phase × M-orientation × T-timepoint raw images with a constant exposure time but increasing the excitation light intensity, where (N, M, T) are (3, 3, 20) for TIRF-SIM and GI-SIM, (5, 5, 10) for nonlinear SIM, and (3, 5, 10) for 3D-SIM.

The BioTISR dataset is related to the following paper:Chang Qiao, Shuran Liu, Yuwang Wang, Wencong Xu, et al. "Time-lapse Image Super-resolution Neural Network with Reliable Confidence Evaluation for Optical Microscopy." bioRxiv 2024.05.04.592503 (2024), which is an extension of our previously published BioSR dataset (https://www.nature.com/articles/s41592-020-01048-5).
DOI: 10.5281/zenodo.13994464
title: BioTISR: F-actin (3D)

description: 3D F-actin data of BioTISR dataset

BioTISR is a biological image dataset for super-resolution microscopy, currently including 2D and 3D time-lapse image pairs of low-and-high resolution images of a variety of biology structures, aiming to provide a high-quality dataset of time-lapse biological SR images for the community to spark more developments of computational SR methods.

At present, 2D dataset includes five specimens (clathrin-coated pits, lysosomes, outer mitochondrial membrane, microtubules, and F-actin) acquired with the GI/TIRF-SIM mode and nonlinear SIM mode of our Multi-SIM system, and 3D data includes three specimens (outer mitochondrial membrane, microtubules, and F-actin) acquired with 3D-SIM mode of the Multi-SIM system. For each type of specimen and each imaging modality, we acquired the raw data from at least 50 distinct regions-of-interest (ROI). For each ROI, we acquired two (3D data) or three (2D data) groups of N-phase × M-orientation × T-timepoint raw images with a constant exposure time but increasing the excitation light intensity, where (N, M, T) are (3, 3, 20) for TIRF-SIM and GI-SIM, (5, 5, 10) for nonlinear SIM, and (3, 5, 10) for 3D-SIM.

The BioTISR dataset is related to the following paper:Chang Qiao, Shuran Liu, Yuwang Wang, Wencong Xu, et al. "Time-lapse Image Super-resolution Neural Network with Reliable Confidence Evaluation for Optical Microscopy." bioRxiv 2024.05.04.592503 (2024), which is an extension of our previously published BioSR dataset (https://www.nature.com/articles/s41592-020-01048-5).
DOI: 10.15468/dl.z93ysf
title: Occurrence Download

description: A dataset containing 1145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-161.09618 23.23149,-111.59871 23.23149,-111.59871 43.03048,-161.09618 43.03048,-161.09618 23.23149))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Diadasia bituberculata (Cresson, 1879)"
 ]
}

 The dataset includes 1145 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026527-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dfqapt
title: Occurrence Download

description: A dataset containing 79149 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platalea minor Temminck & Schlegel, 1849"
 ]
}

 The dataset includes 79149 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026523-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ksmnm
title: Occurrence Download

description: A dataset containing 23623 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pueraria montana (Lour.) Merr."
 ]
}

 The dataset includes 23623 records from 404 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026525-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13144/lil-0949
title: État civil - Fichier détail Mariages - 2013

description: Le fichier annuel des mariages est le résultat de l'exploitation des bulletins d'état civil envoyés par les mairies ayant enregistré des mariages en France métropolitaine, dans les DOM (Guadeloupe, Martinique, Guyane, La Réunion), à Saint Martin et Saint Barthélémy, et depuis 2007 à Saint Pierre et Miquelon. Le fichier de 2013 comprend 238 774 observations. L'enregistrement du mariage est effectué dans la commune ou a été célébré le mariage. Les renseignements sont demandés au déclarant et inscrits sur le bulletin de mariage. Cette source administrative permet de comptabiliser et d'étudier les mariages selon divers critères sociodémographiques des époux ainsi que leurs enfants. L'ordonnance n° 205-759 du 4 juillet 2005, portant réforme de la filiation et entrée en vigueur en juillet 2006, a fait disparaitre du Code Civil la distinction entre enfant légitime et enfant naturel. Pour tous les mariages célébrés après le 1er juillet 2006, il n'y a plus d'information sur les enfants légitimés. En 2013, à la suite de l'adoption de la loi sur le mariage pour tous, les mariages de personnes de même sexe sont comptabilisés.
DOI: 10.15468/dl.cnk27n
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera cambrica",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 43 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014001-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9cypxk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera cambrica",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014003-250920141307145/datasets/export for details.
DOI: 10.15468/dl.vzacqq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera cambrica",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014002-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcmjp4
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Drymocallis fissa",
 "Year 1958-1990"
 ]
}

 The dataset includes 153 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014004-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4j5wq8
title: Occurrence Download

description: A dataset containing 76606 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Puccinellia distans)"
 ]
}

 The dataset includes 76606 records from 534 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013973-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4wpz7
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Living Specimen, Human Observation)",
 "DatasetKey is one of (Northern Gulf of St. Lawrence Fishes, iNaturalist Research-grade Observations, DFO Quebec Region Ecosystemic bottom trawl surveys 2004-2022, Référentiel taxonomique national (TAXREF)-Inventaire des Collectivités d'outre-mer et de la métropole issu des données biogéographiques de TAXREF)",
 {
 "or" : [
 "Geometry POLYGON((-55.3752 51.77651,-56.12776 51.68901,-56.7753 51.37398,-57.24784 51.02396,-57.75538 50.48142,-58.17541 49.88637,-58.49043 49.48384,-58.78795 49.08132,-59.27799 48.80129,-59.57551 48.25876,-59.523 47.61121,-58.89296 47.26118,-57.94789 47.08617,-57.10783 47.17368,-56.35527 47.01616,-56.30277 46.57863,-55.62022 46.49113,-54.55264 46.59613,-53.73008 46.29861,-53.08253 46.28111,-52.6275 46.56113,-52.34748 47.08617,-52.41749 48.32876,-52.6625 48.9063,-53.32755 49.71136,-53.76508 50.3064,-54.46514 50.58642,-54.85016 50.90145,-54.92017 51.46149,-55.3752 51.77651))",
 "Geometry POLYGON((-78.6175 33.86448,-65.76487 37.02977,-58.53479 42.91169,-58.34218 45.78059,-60.35105 47.49249,-58.66705 51.19216,-62.93534 50.4803,-67.64903 49.6049,-73.94761 44.99817,-66.36254 48.29846,-65.79427 47.06851,-63.35734 45.32911,-71.24915 43.39367,-70.58179 42.13207,-76.1094 39.52892,-78.6175 33.86448))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Sphyrna tiburo, Echinorhinus cookei)"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014005-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gq5x3g
title: Occurrence Download

description: A dataset containing 1034 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera cambrica",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1034 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014009-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x7skcp
title: Occurrence Download

description: A dataset containing 298 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera cambrica",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 298 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014008-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.65xcm7
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Dominican Republic",
 "TaxonKey is Crassostrea rhizophorae"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014010-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.un3dq9
title: Occurrence Download

description: A dataset containing 294315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pipistrellus pygmaeus",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Material sample)"
 ]
 }
 },
 "Country is United Kingdom of Great Britain and Northern Ireland",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 294315 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013959-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zfuuve
title: Occurrence Download

description: A dataset containing 3848 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Rottboellia cochinchinensis)"
 ]
}

 The dataset includes 3848 records from 229 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014011-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/6cpm-re79
title: "AuReal: an Automated Model for LLM Reliability Evaluation and Hallucination Detection"

description: "This dataset was constructed to support the evaluation of Large Language Model (LLM) reliability, focusing on correctness and consistency across repeated queries, including five real-world datasets, i.e., ARC, CommonsenseQA (CQA), BoolQ (BQA), SQuAD (SQA) and NarrativeQA (NQA). It contains question\u2013answer pairs where each question is queried multiple times (2\u20135) against different LLMs. Each response is annotated with a binary correctness label by comparing it with ground-truth answers, and an aggregated reliability label indicates whether all responses to a question are correct. To facilitate consistency analysis, semantic similarity scores are also provided, computed using BERT-based embeddings between answers and their corresponding questions. These annotations enable fine-grained evaluation of LLM reliability, particularly in scenarios involving correctness, viewpoint-level consistency, and hallucination detection. The dataset is released in CSV format and can serve as a benchmark for developing and testing automated methods for reliability and safety assessment of LLMs."
DOI: 10.5281/zenodo.17196654
title: ANALYSIS OF RETINAL NERVE FIBER AND GANGLION CELL COMPLEX STATUS IN EARLY OPHTHALMOLOGICAL MANIFESTATIONS OF TYPE 2 DIABETES MELLITUS USING OPTICAL COHERENCE TOMOGRAPHY
DOI: 10.5281/zenodo.17196655
title: ANALYSIS OF RETINAL NERVE FIBER AND GANGLION CELL COMPLEX STATUS IN EARLY OPHTHALMOLOGICAL MANIFESTATIONS OF TYPE 2 DIABETES MELLITUS USING OPTICAL COHERENCE TOMOGRAPHY
DOI: 10.5281/zenodo.17196571
title: Flow cytometry dataset of dexamethasone and immune checkpoint blockade in 4T1 breast cancer model (T cell memory markers)

description: Flow cytometry data were generated to evaluate the effects of dexamethasone alone or in combination with immune checkpoint blockade (ICB) on tumor-infiltrating lymphocytes in the 4T1 breast cancer model. Specifically, we assessed the frequency and density of total CD45⁺ immune cells, CD8⁺ T cells, and memory markers (CD62L and CD44) in T cells.
DOI: 10.5281/zenodo.17196572
title: Flow cytometry dataset of dexamethasone and immune checkpoint blockade in 4T1 breast cancer model (T cell memory markers)

description: Flow cytometry data were generated to evaluate the effects of dexamethasone alone or in combination with immune checkpoint blockade (ICB) on tumor-infiltrating lymphocytes in the 4T1 breast cancer model. Specifically, we assessed the frequency and density of total CD45⁺ immune cells, CD8⁺ T cells, and memory markers (CD62L and CD44) in T cells.
DOI: 10.5281/zenodo.17163266
title: Overall Survival Analysis-Lung Cancer patients treated with Pembrolizumab

description: Due to restricted access to individual patient level data (IPD) from pembrolizumab clinical trials, we employed a validated, evidence-based data synthesis approach to generate a structured dataset suitable for risk modeling. We conducted a systematic literature review across three major databases: Pubmed, Embase , and the Cochrane Library , yielding 2,770 records. After title, abstract, and full-text screening, 36 studies met the inclusion criteria.For each study, we extracted time-to-event data from published Kaplan--Meier (KM) survival curves using image digitization and reconstructed IPD using the algorithm described by \cite{guyot2012ipd}, which preserves original sample sizes and censoring distributions. Demographic and clinical covariates were simulated to match published summary statistics: categorical variables were sampled from multinomial distributions using reported proportions, and continuous variables were generated from parametric distributions fitted to published means and standard deviations. When only medians and interquartile ranges were available, standard moment-matching techniques were applied to approximate the underlying distributions. To reflect uncertainty inherent in the imputed covariates and event times, we generated ten multiple imputed datasets and combined estimates across imputations using Rubin’s rules. In each dataset, we encoded 12-month mortality as a binary outcome, where \( y_i = 1 \) if death occurred within 12 months, and \( y_i = 0 \) otherwise. This short-term binary endpoint was used solely as a validation step to confirm the fidelity of the reconstructed IPD and was not the primary focus of our analysis. As an additional validation step, we evaluated the consistency between the reconstructed and published survival curves by overlaying Kaplan--Meier plots and computing the root mean square error (RMSE) between survival probabilities at reported time points, following best practices for IPD reconstruction.
DOI: 10.5281/zenodo.17163267
title: Overall Survival Analysis-Lung Cancer patients treated with Pembrolizumab

description: Due to restricted access to individual patient level data (IPD) from pembrolizumab clinical trials, we employed a validated, evidence-based data synthesis approach to generate a structured dataset suitable for risk modeling. We conducted a systematic literature review across three major databases: Pubmed, Embase , and the Cochrane Library , yielding 2,770 records. After title, abstract, and full-text screening, 36 studies met the inclusion criteria.For each study, we extracted time-to-event data from published Kaplan--Meier (KM) survival curves using image digitization and reconstructed IPD using the algorithm described by \cite{guyot2012ipd}, which preserves original sample sizes and censoring distributions. Demographic and clinical covariates were simulated to match published summary statistics: categorical variables were sampled from multinomial distributions using reported proportions, and continuous variables were generated from parametric distributions fitted to published means and standard deviations. When only medians and interquartile ranges were available, standard moment-matching techniques were applied to approximate the underlying distributions. To reflect uncertainty inherent in the imputed covariates and event times, we generated ten multiple imputed datasets and combined estimates across imputations using Rubin’s rules. In each dataset, we encoded 12-month mortality as a binary outcome, where \( y_i = 1 \) if death occurred within 12 months, and \( y_i = 0 \) otherwise. This short-term binary endpoint was used solely as a validation step to confirm the fidelity of the reconstructed IPD and was not the primary focus of our analysis. As an additional validation step, we evaluated the consistency between the reconstructed and published survival curves by overlaying Kaplan--Meier plots and computing the root mean square error (RMSE) between survival probabilities at reported time points, following best practices for IPD reconstruction.
DOI: 10.15468/dl.wbxjhd
title: Occurrence Download

description: A dataset containing 55 records in GBIF matching the query:
SELECT "year", COUNT(*) as occurrence_count 
 FROM occurrence
 WHERE "year" &gt;= 1970 
 AND level0gid = 'RWA' 
 AND (kingdom = 'Plantae' OR kingdom = 'Animalia') 
 AND (basisOfRecord = 'OBSERVATION' OR basisOfRecord = 'LIVING_SPECIMEN' OR basisOfRecord = 'MATERIAL_SAMPLE' OR basisOfRecord = 'HUMAN_OBSERVATION' OR basisOfRecord = 'MACHINE_OBSERVATION' OR basisOfRecord = 'OCCURRENCE')
 AND occurrenceStatus = 'PRESENT' 
 AND decimalLongitude IS NOT NULL 
 AND decimalLatitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') 
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') 
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') 
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') 
 GROUP BY "year"
 ORDER BY "year"

 The dataset's 55 records were derived from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013989-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgkkpk
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera casimiri",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014013-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.