cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5104546.v1
title: Supplementary Material for: Subsets of Finns with High HDL to Total Cholesterol Ratio Show Evidence for Linkage to Type 2 Diabetes on Chromosome 6q

description: <i>Objectives:</i> The purpose of this study was to examine carefully heterogeneity underlying evidence for linkage to type 2 diabetes (T2DM) on chromosome 6q from two sets of FUSION families. <i>Methods:</i> Ordered subsets analysis (OSA) was performed on two sets of FUSION families. For OSA results showing significant improvement in evidence for linkage, T2DM-related phenotypes were compared between individuals with T2DM within the subset versus the complement. <i>Results:</i> OSA analysis revealed 105 families with the highest average HDL to total cholesterol ratio (HDL ratio) that had strongly increased evidence for linkage (MLS = 7.91 at 78.0 cM; uncorrected p = 0.00002). Subjects with T2DM within this subset were significantly leaner, had lower fasting glucose, insulin, and C-peptide, and more favorable cardiovascular risk profile compared to the complement set of subjects with T2DM. OSA also revealed 33 families with the lowest average fasting insulin that had increased evidence for linkage at a second locus (MLS = 3.45 at 128 cM; uncorrected p = 0.017) coincident with quantitative trait locus linkage analysis results for fasting and 2-hour insulin in subjects without T2DM. <i>Conclusions:</i> These results suggest two diabetes susceptibility loci on chromosome 6q that may affect subsets of individuals with a milder form of T2DM.
DOI: 10.17632/h4wgmnbzhh
title: Supplemental_figures_for_relative_methane_efficiency

description: Here are 4 supplemental figures, proving the manuscript "Development and practical application of a single-step genomic evaluation system for methane efficiency in Walloon Holstein cows.". 

- Supplemental Figure 1 shows the standard deviation (SD) of the observed residual (difference between observed and predicted values) within DIM for predicted methane (PCH4) of the first 3 parities in the whole dataset.

- Supplemental Figure 2 shows the phenotypic trend of predicted methane (PCH4).

- Supplemental Figure 3 shows the reliability of all 38 using traits. 

- Supplemental Figure 4 shows the genetic trends of all 38 traits based on adjusted data.

PS: The using 38 traits (indices) are predicted CH4 (PCH4) , milk yield (MY), fat yield (FY), protein yield (PY), fat percentage (FP), protein percentage (PP), udder health (UH), longevity (LONG), female fertility (FF), BCS, direct calving ease (DCE), maternal calving ease (MCE), stature (STA), chest width (CWI), body depth (BDE), rump angle (RAN), rump width (RWI), foot angle (FAN), rear leg set (RLS), rear leg rear view (RLR), udder depth (UDE), udder support (USU), fore udder (FUD), front teat placement (FTP), teat length (TLE), rear udder height (RUH), rear teat placement (RTP), angularity (ANG), overall feet and leg score (OFL), overall udder score (OUS), and overall conformation score (OCS), production economic index (V€L), member economic index(V€M), capacity economic index (V€C), udder economic index (V€P), functional type economic index(V€T), functional economic index (V€F), global economic index (V€G).
DOI: 10.17632/n5cs6wjpjp
title: Data for "Cellular control of viscosity counters changes in temperature and energy availability"

description: Raw data for "Cellular control of viscosity counters changes in temperature and energy availability". File contents are as follows: Raw Data 1.zip: Example FRAP movies Raw Data 2.zip: FRAP data for t-half Determination using easyFRAP Raw Data 3.zip: FRAP movies for diffusion coefficient determination using simFRAP Descriptions: Raw Data 1. Example FRAP movies, Related to Figures 2-5 and 7 and Figures S2-4, S6, and S7. Containing the following sub-folders: Movies 1. FRAP on GFP in cells transferred to multiple temperatures, non-steady state, Related to Figure 2B Movies 2. FRAP on GFP in cells in logarithmic growth at steady state for multiple temperatures, Related to Figure 2D Movies 3. FRAP on GFP in cells acutely heat shocked at 42°C in strains with and without impaired synthesis of glycogen, trehalose, or both, Related to Figure 3C Movies 4. FRAP on GFP in cells recovered from heat shocked with and without DAB and Validamycin A treatment, Related to Figure 3D Movies 5. FRAP on GFP in cells experiencing different conditions of nutrient deprivation, Related to Figures 4E and S4B Movies 6. In vitro FRAP on purified GFP in solutions of varying glycogen and trehalose content at 22°C and 40°C, Related to Figure 5A Movie 7. Magnetic beads puncture an inclusion in a lysate from cells heat shocked at 45°C for 30 minutes prior to lysis. Beads begin on one edge of the lysate and are drawn through the lysate by use of a strong magnet. and images are taken at 10x using brightfield illumination on an epifluorescent microscope, Related to Figure 6B-C Movies 8. FRAP on GFP in the Reg1 knockout strain in logarithmic growth and stationary phase, Related to Figures 6F and S6F. Movies 9. FRAP on GFP in wildtype yeast treated with the mitochondrial poisons sodium azide, sodium arsenite, or a combination of Antimycin A, Oligomycin A, and FCCP, with an untreated control, Related to Figure 7A. Raw Data 2. Data extracted from in vitro and in vivo FRAP movies for the determination of t-half values, Related to Main Figures 1-5 and 7 and Figures S2-4, S6, and S7. Data is in the form of excel spreadsheets of the format [column 1: time, column 2: intensity of bleached region, column 3: intensity of unbleached control region, and column 4: intensity of a non-fluorescent background region]. Spreadsheets were used as the input for the online tool easyFRAP (Koulouras et al., 2018). Related to Figures 1-7 and Figures S2-4,S6-7. Raw Data 3. Unprocessed FRAP movies used for determination of the diffusion coefficient of GFP in vitro and in vivo. Movies were used directly with the imagej software simFRAP (Blumenthal et al., 2015). Related to Figures 1 and 2.
DOI: 10.17632/wybbtfwcmb
title: Data for: Language disintegration in spontaneous speech in Huntington’s disease: fine-graining the linguistic-cognitive profile

description: Anonymised data test for all linguistic and neuropsychological variables used in the analysis of the above paper.
DOI: 10.17632/zcwtmvgj2y
title: PERFORMANCE EVALUATION OF NIFTY 50 NON FINANCIAL COMPANIES IN INDIA: AN ENTROPY BASED TOPSIS APPROACH

description: This study evaluates the financial performance of 39 non-financial companies listed on the Nifty 50 index in India for the financial year 2022-2023. The analysis employs the Entropy and TOPSIS approaches to assess the companies based on seven key financial ratios. The Entropy method determines each criterion’s weight, objectively evaluating their relative importance. Subsequently, the TOPSIS method ranks the companies by comparing their financial performance against an ideal solution. The findings provide valuable insights into the relative performance of these companies,
 offering a comprehensive view of their financial health and operational efficiency during a period marked by economic volatility and post-pandemic recovery. This study aims to assist investors, financial analysts, and policymakers in making informed decisions by identifying top-performing companies and understanding the factors contributing to their success. The results also shed light on the critical financial metrics significantly influencing the company’s performance in the Indian market. The entropy analysis showed that the debt-equity ratio is the most significant performance indicator, while the net profit margin (NPM) is the least significant criterion. Subsequently, TOPSIS analysis revealed that Nestle India Ltd. was the top performer during the study period. On the other hand, the company Bharti Airtel Ltd. has shown poor performance and requires more attention for improvement in some areas.
DOI: 10.6084/m9.figshare.23607738.v1
title: patient68.rar

description: A Patient with fundus images that taken by Ret-cam.
DOI: 10.17632/9nwr36nd59
title: Data for: The Gut-Brain Relationship: Investigating the effect of multispecies probiotics on anxiety.

description: A year-long investigation on the effect of probiotic on anxiety
DOI: 10.17632/d4trsj9dpx
title: Data for: Paracaval Lipoma: Case Study and Literature Review

description: Abstract: Paracaval lipoma refers to a fatty tissue collection surrounding the intrahepatic portion of the inferior vena cava (IVC). It is a rare but benign finding on abdominal CT imaging, speculated to be a result of negative thoracic pressure on the inferior vena cava during inspiration. If not recognized, paracaval lipoma can be confused for thrombus or, worse yet, malignant invasion of the IVC, resulting in a costly and unnecessary workup. Here we describe a 51-year old white male presenting to our institution with a two-week history of abdominal pain, increasing abdominal girth, jaundice and ascites; subsequent CT of the abdomen and pelvis without contrast revealed an incidental finding of fat deposition around the caudate lobe in a juxtacaval distribution, consistent with paracaval lipoma.
DOI: 10.6084/m9.figshare.1149962.v1
title: Lancichinetti-Fortunato-Radicchi (LFR) benchmark

description: This program is an implementation of the algorithm described in the paper "Directed, weighted and overlapping benchmark graphs for community detection algorithms", written by Andrea Lancichinetti and Santo Fortunato. In particular, this program is to produce binary networks with overlapping nodes.<br><br>
DOI: 10.6084/m9.figshare.12204824.v1
title: Supplementary Material for: Novel Clinical Criteria Allow Detection of Short Stature Homeobox-Containing Gene Haploinsufficiency Caused by Either Gene or Enhancer Region Defects

description: <b><i>Introduction:</i></b> Short stature homeobox-containing gene (<i>SHOX</i>) haploinsufficiency is associated with short stature, Madelung deformity and mesomelia. Current clinical screening tools are based on patients with intragenic variants or deletions. However, recent discoveries showed that deletions of the enhancer elements are quite common. The majority of these patients show less body disproportion and respond better to recombinant human growth hormone treatment. We redefined clinical criteria for genetic analysis to facilitate detection of the full spectrum of <i>SHOX</i> haploinsufficiency. <b><i>Methods:</i></b> We analyzed 51 children with <i>SHOX</i> variants or deletions and 25 children with a deletion in its enhancer region. Data were compared to 277 children referred for suspicion of growth failure without endocrine or genetic pathology. <b><i>Results:</i></b> Only half of the patients with an enhancer region deletion fulfilled any of the current screening criteria. We propose new clinical criteria based on sitting height to height ratio &gt;1 SDS or arm span ≥3 cm below height, with a sensitivity of 99%. When these criteria are combined with obligatory short stature, the sensitivity to detect <i>SHOX</i> haploinsufficiency is 68.1%, the specificity 80.6%, and the number needed to screen 21 patients. <b><i>Conclusion:</i></b> Novel clinical criteria for screening for <i>SHOX</i> haploinsufficiency allow the detection of patients within the full genetic spectrum, that is, intragenic variants and enhancer region deletions.
DOI: 10.6084/m9.figshare.13204025.v1
title: R0186-DLC_output

description: deeplabcut output and processed 3D reconstructions of data for rat 0186."_direct" zip files contain .csv's from the direct view and .mat files with cropping regions"_right/left" zip files contain .csv's from the mirror view and .mat files with cropping regions"_processed" files contain 3D reconstructions and reach analyses
DOI: 10.6084/m9.figshare.17099123.v1
title: Table S1

description: Table S1. Characteristics of 189 MAGs recovered from 12 groundwater-fed rapid sand filters in Denmark.
DOI: 10.6084/m9.figshare.5554600.v1
title: Experiment HaLT-SubjectF-160202-6States

description: Experiment in which subject performed 6 imageries of left and right hand motion, left and right leg motion, tongue motion, and a passive state.
DOI: 10.6084/m9.figshare.8232935.v1
title: Curated Virulence Factor Database

description: This database contains a curated version of the PATRIC VFDB with unique orthologs and proteins directly involved with virulence, excluding chaperones and ABC transporters.
DOI: 10.17632/zhsw92kw2z
title: Data for: Potential Sources of Dissolved Methane at the Tablelands, Gros Morne National Park, NL, CAN: a Terrestrial Site of Serpentinization
DOI: 10.6084/m9.figshare.19545475.v1
title: Uncertainty estimation of reference evapotranspiration (PISCOeo_pm)

description: Gridded uncertainty of reference evapotranspiration (PISCOeo_pm) at yearly (1981-2016) and monthly (1981-2016) scale at 0.01° for Peru
DOI: 10.6084/m9.figshare.19944499.v1
title: Geotechnical properties of some kaolinite-rich Brazilian Vertisols

description: Abstract Vertisols presenting kaolinite codominance or prevalence were already reported in several countries worldwide. However, the literature has few studies focused on investigating the influence of this clay mineral in soil geotechnical behavior. This study aimed to carry out the characterization of Vertisols in Bahia State, Brazil, to understand the influence of physical, chemical, and mineralogical properties on their geotechnical behavior, as these soils have high natural fertility and have been used for agricultural activity, but with great risk due to their physical and geotechnical properties. Six Vertisols were selected, three located in Juazeiro County (Semiarid region) and the other three in Recôncavo region. Geotechnical characterization of selected soils was carried out in their respective diagnostic horizons by determining properties such as granulometric curve, Atterberg limits, clay activity, linear expansion coefficient, compaction capacity, cohesion (c), and internal friction angle (ϕ) of saturated soils. Soil expansion potential was associated with expansive clay contents and clay content in each soil sample. The best soil compaction efficiency was observed for kaolinitic Vertisol, which presented greater void ratio reduction and higher density due to moisture increase. In addition, c increased as kaolinite content also increased and decreased as clay content increased in soils presenting similar mineralogy. On the other hand, ϕ was influenced mainly by granulometry since higher sand and gravel levels enabled higher ϕ, regardless of clay type.
DOI: 10.6084/m9.figshare.21587451.v1
title: Plant C:N ratio predicts community composition changes under N addition in an alpine meadow

description: Plant functional traits play important roles in determining plant responses to environmental change and further shaping community composition, but the role of plant stoichiometry remains poorly understood in regulating community responses to continually increased nitrogen (N) deposition. Here, we used a five-year manipulative experiment with six N addition rates (N<sub>rate</sub>) to explore how the N response of different plant functional groups links to aboveground plant carbon-to-N ratio in an alpine meadow. We found that functional groups with higher C:N tended to grow better and have greater abundance over increasing N<sub>rate</sub>, yet those with lower C:N were at risk of loss, subsequently mitigating the N-caused decline in community-level plant C:N. This was mainly due to that functional groups with higher C:N not only possessed higher N use efficiency but also had greater competitiveness for aboveground light due to higher plant height. Our results show that the N responses of different herbaceous plants can be well explained by plant C:N. Thus, we suggest the prediction of plant community composition changes under N deposition would be greatly improved by considering this easily measured stoichiometric trait. Here we share our dataset related to our manuscript.
DOI: 10.6084/m9.figshare.24991041.v1
title: Data from: The dimensionality of infection networks among viruses infecting microbial eukaryotes and bacteria

description: This dataset contains previously published phytoplankton-virus networks newly compiled for the associated paper published in Ecology Letters, and R code for analyzing network dimensionality.11 phytoplankton-virus networks are stored as .csv files, where the rows are virus strains and the columns are host strains. Within the matrix a value of 1 indicates that the virus strain can infect the phytoplankton strain, while 0 indicates that it cannot. The csv files are named with the last name of the first author of the publication, followed by the date of publication. Full references are included in the associated publication.The R code includes three scripts. One script sorts a network in one dimension and compares the number of errors to what is expected from a null model. The second script finds the minimum dimensionality of a network (the number of dimensions that yields zero errors). The third script plots a network sorted in one dimension.
DOI: 10.6084/m9.figshare.27394875.v2
title: Dataset: Henry’s Constant and Vapor Pressure for 30 Per- and Polyfluoroalkyl Substances (PFAS): Considerations for Vapor Intrusion Investigations

description: This data repository contains the data, Python scripts, and results from a study assessing the vapor intrusion potential of 31 PFAS compounds.
DOI: 10.6084/m9.figshare.7609745.v1
title: faraday_rotation_cdkapellasite.xlsx

description: Magnetization process of a spin 1/2 kagome antiferromagnet Cd-kapellasite measured by inductive method and Faraday rotation method. Theoretical calculation with or without Dzyloshinskii Moriya interaction is also included.
DOI: 10.6084/m9.figshare.12839240.v5
title: A band-gap database for semiconducting inorganic materials calculated with hybrid functional

description: Highly accurate band-gap database for 10,481 inorganic compounds with <i>E</i><sub>g</sub> ranging from 0 to 5 eV
DOI: 10.6084/m9.figshare.23804517.v1
title: Coordinated Optimization with Integrated Demand Response-Enabled Energy Sharing Techniques Considering Hydrogen Source.

description: Tri-hubs hydrogen based integrated energy system including integrated demand response programming (IDRPs) considering energy sharing and carbon trading.
DOI: 10.17632/hn4cd98gxd
title: Water quality _ relationship_land use

description: The data combines water quality through water quality indices and heavy metal contamination index. In addition, data was collected on the main land uses in the area adjacent to the stream.
DOI: 10.6084/m9.figshare.14276766.v1
title: Satisfaction of patients submitted to PresbyLASIK refractive surgery

description: Abstract Objectives: Toassess the satisfaction of patients undergoing central Presbilasik surgery and to determine the age of patients who undergo PresbiLASIK and the prevalence of symptoms reported after surgery. Methods: This is a descriptive, observational, cross-sectional study with data collected from patients previously submitted to PresbiLASIK. Results: The sample consisted of 45 patients, with a mean age of 57.7 (±7,19) years. The average score attributed to visual satisfaction with the procedure was 8.9 (±1.0). Visual quality after surgery was classified as equal to or better than expected by 84.5% of the patients and 31% complained of nocturnal symptoms such as halos and comet rays. Conclusion: The quality of vision after the PresbiLASIK procedure was highly satisfactory for the patients. A determining factor for this satisfaction is the process of managing patients’ preoperative expectations, informing them about the therapeutic possibilities available, and, in the case of surgical choice, about its advantages and limitations.
DOI: 10.6084/m9.figshare.14745447.v1
title: processing-epi2me-output

description: Output files from EPI2ME taxonomic classifications and the codes used to convert them into OTU counts and taxonomy tables.
DOI: 10.6084/m9.figshare.23576397.v1
title: Bacteria and heavy metal risk data and calculation

description: Bacteria and heavy metal risk data
DOI: 10.17632/mhvgw5mjs8
title: Data for: Grade-cost relationships within Australian underground gold mines – A 2014-2017 empirical study and potential value implications

description: Australian underground gold mine production and costs data from 1 January 2014 to 31 December 2017. Underground regression models. Gold price, Inflation, Diesel Price data used in the manuscript. Additional open pit production and costs data
DOI: 10.6084/m9.figshare.12137313.v1
title: Data for: A 4.6 Mb inversion leading to PCDH15-LINC00844 and BICC1-PCDH15 fusion transcripts as a new pathogenic mechanism implicated in Usher syndrome type 1

description: This is an archive of DNA and RNA sequences supporting the results presented in this manuscript<br>
DOI: 10.17632/pc773fty8m
title: Tuberculosisdata

description: time to early TB treatment interruption among newly diagnosed TB patients
DOI: 10.6084/m9.figshare.17110985.v1
title: count-data-heart-annotated.h5ad

description: tissue-specific single-cell read count data showing the changes with parabiosis
DOI: 10.6084/m9.figshare.19077875.v1
title: Dataset of linear-array recordings from macaque V4 during a fixation task

description: This dataset contains recorded spiking activity (multi- and single-units) from one monkey (monkey G) while performing a fixation task. The neural activity is recorded from the visual area V4 with a 16-channel linear array.Dataset includes 5 recording sessions 2013_06_05, 2013_06_15, 2013_06_16, 2013_06_18, 2013_06_20. For more details check the README file and the reference below.<br>
DOI: 10.6084/m9.figshare.7732367.v2
title: The multiple roles of feedback in GTPB bioinformatics training courses

description: @page { margin: 2cm } p { margin-bottom: 0.25cm; line-height: 115% } The multiple roles of feedback in GTPB bioinformatics training courses In Face-to-Face training courses there are multiple opportunities for collecting valuable feedback. Instant feedback is elicited by questioning the audience during the course to gauge the effectiveness of the learning in various aspects, reflecting on the comfort of the learner in using new skills without help (usage independence). On top of allowing for immediate corrections in the delivery, the answers allow the instructors to pay special attention to learners in difficulty. After the course, a standardised feedback questionnaire collects qualitative and quantitative data, aiming at the evaluation of course quality, adequacy of the methods and immediate impact. GTPB courses have been systematically recording post-course short term feedback for the last 12 years.
DOI: 10.6084/m9.figshare.28466435.v1
title: <b>Trade risks to energy security in net-zero emissions energy scenarios</b>

description: <b>Secure access to energy services is a prerequisite to economic productivity and a chief strategic concern of national governments. Yet it is unclear how trade of fuels and critical materials in scenarios that achieve net-zero emissions relate to energy security risks. Here, we find that overall trade risks decrease in most countries (70%) in net-zero scenarios due to reduced reliance on imported fossil fuels, but trade risks to either electricity or transportation systems increase in a majority (82%) of countries that become more dependent on imported materials. Countries with abundant mineral reserves (e.g., Australia and China) become much less dependent on imports, but the opposite is true in countries with large fossil-fuel reserves (e.g., Russia, the Middle East). We further evaluate the sensitivity of countries’ trade risks to differences in trading networks, energy systems, material intensities of technologies, and recycling rates, highlighting opportunities for technological innovation and policy changes.</b>
DOI: 10.17632/mh2v4pcr6v
title: Mental health among youth (2020-2023)

description: University of Cambridge Health Open