cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/0aty2-ysx21
title: HeLa siRNA tfx CHMP2A/B infx pNLGFP

description: HeLa cells infected with pNLGFP and 12h post infection cells were transfected with siRNA targeting CHMP2A and CHMP2B. 18h after siRNA tfx, cells were frozen Sample# C84-2/3
description: <strong>Tilt Series Date:</strong> 2011-05-31</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HeLa cells</p>
<strong>Strain:</strong> ATCC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> CHMP2A and 2B siRNAs provided by Wes Sundquist. pNLGFP proviral construct provided by Irvin Chen UCLA.  Virus prepared at Caltech by Cora Woodward.  Cells transfected with siRNA and then infected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and infected and siRNA transfected</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-05-31-1/3dimage_68487/</p>11may31_PI_1b_full.rec,  Reconstruction (Pixel Size 2.0 nm), 567.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-05-31-1/3dimage_68487/11may31_PI_1b_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11may31_PI_1.st,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-05-31-1/rawdata/11may31_PI_1.st"
        > <i class="download icon"></i> Download </a></p>

        11may31_PI_1b.tiff,  file associated to 3D Image #68487, 978.9 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-05-31-1/file_15915/11may31_PI_1b.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4emqr-c7d04
title: Sulfolobus cells synchronized for division

description: search for ESCRT in dividing cells
description: <strong>Tilt Series Date:</strong> 2011-01-16</p>
<strong>Data Taken By:</strong> Megan Dobro</p>
<strong>Species / Specimen:</strong> Sulfolobus acidocaldarius</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 1.5 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> grown and synchronized by Rachel Samson in Stephen Bell's lab, Oxford University</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in Brock's Medium at 80C, synchronize with Baby Machine</p>
<strong>Sample Preparation:</strong> frozen at Kay Grunewald's lab. Harrick plasma cleaner. Blotted on one sides, 6 sec, sponge for humidity</p>
  mdj2011-01-16-7_slicer8754.jpg: pili .  Sulfolobus acidocaldarius
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mdj2011-01-16-7/rawdata/</p>11jan16a_Bx13gr2_008.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mdj2011-01-16-7/rawdata/11jan16a_Bx13gr2_008.mrc"
        > <i class="download icon"></i> Download </a></p>

        11jan16a_Bx13gr2_008_full.rec,  Reconstruction (Pixel Size 2.5 nm), 817.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mdj2011-01-16-7/3dimage_19325/11jan16a_Bx13gr2_008_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11jan16a_Bx13gr2_008.rec,  Reconstruction (Pixel Size 2.5 nm), 408.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mdj2011-01-16-7/3dimage_19326/11jan16a_Bx13gr2_008.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0p9ja-wtw95
title: Cryo-sectioned Jurkat VSVG-pNL4GFP

description: Jurkats infected by spinoculation with VSVG-pNL4GFP, collected 30 min after synchronous entry, HP frozen and cryo-sectioned by Mark Ladinsky
description: <strong>Tilt Series Date:</strong> 2011-12-12</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Jurkat Human T-cell</p>
<strong>Strain:</strong> Clone E6-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> pNL4GFP provirus construct from Irvin Chen (UCLA). Vpr-gfp construct to label virus provided by Tom Hope. Virus made at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> infected VSVG-pNL4GFP</p>
<strong>Sample Preparation:</strong> cryo-sectioned by Mark Ladinsky</p>
  11dec12_cryosec_pnlegfp_grid3_Batch1_0001_full.jpg: file associated to 3D Image #54351
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-12-1/rawdata/</p>11dec12_cryosec_pnlegfp_grid3_Batch1_0001.st,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-12-1/rawdata/11dec12_cryosec_pnlegfp_grid3_Batch1_0001.st"
        > <i class="download icon"></i> Download </a></p>

        11dec12_cryosec_pnlegfp_grid3_Batch1_0001_full.rec,  Reconstruction (Pixel Size 2.0 nm), 476.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-12-1/3dimage_54351/11dec12_cryosec_pnlegfp_grid3_Batch1_0001_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11dec12_cryosec_pnlegfp_grid3_Batch1_0001_full.tiff,  file associated to 3D Image #54351, 1.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-12-1/file_13085/11dec12_cryosec_pnlegfp_grid3_Batch1_0001_full.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4mg40-ekt21
title: Cryo-sectioned Jurkat VSVG-pNL4GFP

description: Jurkats infected by spinoculation with VSVG-pNL4GFP, collected 30 min after synchronous entry, HP frozen and cryo-sectioned by Mark Ladinsky. Used for CLEM
description: <strong>Tilt Series Date:</strong> 2011-12-15</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Jurkat Human T-cell</p>
<strong>Strain:</strong> Clone E6-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> pNL4GFP provirus construct from Irvin Chen (UCLA). Vpr-gfp construct to label virus provided by Tom Hope. Virus made at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> infected VSVG-pNL4GFP</p>
<strong>Sample Preparation:</strong> cryo-sectioned by Mark Ladinsky</p>
  11dec15_CRYOSECS_pNLEGFP_grid2_0008_ns_full.jpg: file associated to 3D Image #54422
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-15-3/rawdata/</p>11dec15_CRYOSECS_pNLEGFP_grid2_0008_ns.st,  Tilt Series (Pixel Size 0.5 nm), 957.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-15-3/rawdata/11dec15_CRYOSECS_pNLEGFP_grid2_0008_ns.st"
        > <i class="download icon"></i> Download </a></p>

        11dec15_CRYOSECS_pNLEGFP_grid2_0008_ns_full.rec,  Reconstruction (Pixel Size 2.0 nm), 454.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-15-3/3dimage_54422/11dec15_CRYOSECS_pNLEGFP_grid2_0008_ns_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11dec15_CRYOSECS_pNLEGFP_grid2_0008_ns_full.tiff,  file associated to 3D Image #54422, 1.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-15-3/file_13153/11dec15_CRYOSECS_pNLEGFP_grid2_0008_ns_full.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/s3130-48229
title: (D161A)MamK-GFP/wild type

description: Raw data files of (D161A)MamK-GFP/wild type
description: <strong>Tilt Series Date:</strong> 2009-11-23</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -16.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> Cells provided by Arash Komeili; data collected by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> (Probably) stationary phase </p>
<strong>Sample Preparation:</strong> Quantifoil R2/2, R2/1, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-47/rawdata/</p>09nov23a_D161Awt_047.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-47/rawdata/09nov23a_D161Awt_047.mrc"
        > <i class="download icon"></i> Download </a></p>

        09nov23a_D161Awt_047_full.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-47/3dimage_9719/09nov23a_D161Awt_047_full.rec"
        > <i class="download icon"></i> Download </a></p>

        zla2009-11-23-47_slicer16460.png,  541.8 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/zla2009-11-23-47_slicer16460.png"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8bjtk-g0v79
title: MP TopJ 27.5KX

description: Mycoplasma pneumonia TopJ mutant, weak feature
description: <strong>Tilt Series Date:</strong> 2010-03-31</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> data collected by Jian; processed by Jian</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
  jsa2010-03-31-15_slicer5722.jpg: filament jsa2010-03-31-15_slicer5730.jpg: unknown jsa2010-03-31-15_slicer5741.jpg: unknown tube jsa2010-03-31-15_slicer5755.jpg: unknown jsa2010-03-31-15_slicer5760.jpg: unknown jsa2010-03-31-15_slicer5766.jpg: unknown tube .  [2014-07-23 14:05:57] appendage
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-15/rawdata/</p>10mar31a_B572c_021.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-15/rawdata/10mar31a_B572c_021.mrc"
        > <i class="download icon"></i> Download </a></p>

        10mar31a_B572c_021_full.rec,  Reconstruction (Pixel Size 1.548 nm), 314.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-15/3dimage_17071/10mar31a_B572c_021_full.rec"
        > <i class="download icon"></i> Download </a></p>

        10mar31a_B572c_021_SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 524.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-15/3dimage_55987/10mar31a_B572c_021_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4g9xw-e7533
title: COS7 CHMP4A+VPS4DN

description: Cos7 cells transfected with CHMP4A & VPS4DN constructs
description: <strong>Tilt Series Date:</strong> 2011-12-25</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Constructs provided by Wes Sundquist. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-25-9/rawdata/</p>11dec25_C104_2_COS7_4ADN_AT1BT10012_ns.st,  Tilt Series (Pixel Size 0.5 nm), 933.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-25-9/rawdata/11dec25_C104_2_COS7_4ADN_AT1BT10012_ns.st"
        > <i class="download icon"></i> Download </a></p>

        11dec25_C104_2_COS7_4ADN_AT1BT10012_ns_full.rec,  Reconstruction (Pixel Size 2.0 nm), 660.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-25-9/3dimage_68155/11dec25_C104_2_COS7_4ADN_AT1BT10012_ns_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11dec25_C104_2_COS7_4ADN_AT1BT10012_ns_full.tiff,  file associated to 3D Image #68155, 408.7 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-25-9/file_15868/11dec25_C104_2_COS7_4ADN_AT1BT10012_ns_full.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.wkmhnh
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trichomycterus spilosoma)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044037-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16945389
title: Sympathetic dynamics new framework of general relativity

description: Sympathic Dynamics (SD) is a formal system built on three primitives—Resonance, Perspective, and

Transformation—aimed at replacing numeric primacy with relational coherence. SD provides algebraic

and categorical structures that encode how phenomena align (sympathize), oppose (antipathize), or

remain orthogonal relative to observers and contexts. We introduce a lattice-valued coherence

functional, perspective-indexed operators, a transformation calculus, and a paraconsistent logic of

resonance. We show how standard mathematical objects (reals, vector spaces, groups, metrics)

embed within SD as special cases, while SD extends to contexts where classical measurement or

binary truth breaks down. Applications span physics (horizons, entanglement), computing (attunement

circuits), and complex systems. We present worked examples, testable predictions, and an axiomatic

basis designed for rigorous comparison and empirical engagemen
DOI: 10.22002/catmq-5ya23
title: 1003_deletion

description: Raw data files of 1003_deletion
description: <strong>Tilt Series Date:</strong> 2009-10-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> Cells sent from Arash Komeili, data collected by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> (Could be) Stationary phase</p>
<strong>Sample Preparation:</strong> Quantifoil R2/1 or R2/2, 10nm gold, 100% humidity</p>
  zla2009-10-21-44_slicer7217.jpg: extracellular vesicle .  budding vesicle zla2009-10-21-44_slicer7219.jpg: extracellular vesicle zla2009-10-21-44_slicer7220.jpg: peptidoglycan zla2009-10-21-44_slicer7223.jpg: filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-21-44/rawdata/</p>09oct21a_m1003_044.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-21-44/rawdata/09oct21a_m1003_044.mrc"
        > <i class="download icon"></i> Download </a></p>

        09oct21a_m1003_044_part.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-21-44/3dimage_9981/09oct21a_m1003_044_part.rec"
        > <i class="download icon"></i> Download </a></p>

        09oct21a_m1003_044.tif,  1.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-21-44/file_2810/09oct21a_m1003_044.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cta3n-3q440
title: COS7 CHMP4A+VPS4DN

description: Cos7 cells transfected with CHMP4A & VPS4DN constructs
description: <strong>Tilt Series Date:</strong> 2011-12-25</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Constructs provided by Wes Sundquist. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-25-8/rawdata/</p>11dec25_C104_2_COS7_4ADN_AT1BT10011_ns.st,  Tilt Series (Pixel Size 0.5 nm), 825.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-25-8/rawdata/11dec25_C104_2_COS7_4ADN_AT1BT10011_ns.st"
        > <i class="download icon"></i> Download </a></p>

        11dec25_C104_2_COS7_4ADN_AT1BT10011_ns_full.rec,  Reconstruction (Pixel Size 2.0 nm), 454.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-25-8/3dimage_68153/11dec25_C104_2_COS7_4ADN_AT1BT10011_ns_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11dec25_C104_2_COS7_4ADN_AT1BT10011_ns_full.tiff,  file associated to 3D Image #68153, 1.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-12-25-8/file_15867/11dec25_C104_2_COS7_4ADN_AT1BT10011_ns_full.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.57830/2304836
title: Lagomorph Inventory at Great Sand Dunes National Park and Preserve 2022 - Open Format Dataset

description: Rabbit hemorrhagic disease virus type 2 (RHDV2) has caused dramatic declines in rabbits and hares on several continents. Recent mortalities have been reported for several rabbit and hare species in the United States, suggesting broad susceptibility of lagomorphs. If this susceptibility extends to the American pika (Ochotona princeps), the most cold-adapted lagomorph, it could compound climate-mediated threats to this species. Due to climate change, American pikas are predicted to experience significant upslope range retraction during this century. To address this concern, we investigated spatial patterns of habitat use by pikas and other lagomorphs in Great Sand Dunes National Park and Preserve, which borders several counties that have reported RHDV2. In 2022, we surveyed 115 plots of pika habitats in the park, including 48 legacy plots from a pika survey conducted in 2010-2012. Our mean estimate of pika habitat occupancy was at least 95% during 2022 in GRSA, slightly higher than in 2010-2012. Leporid presence at these same plots was 48%. The best model of leporid presence supported a negative effect of elevation. Both models also included a positive effect of incoming solar radiation. Finally, we used our best models of pika habitat occupancy and leporid presence to map the potential for areas of contact and RHDV2 transmission between these taxa. Our results indicate some potential for contact within subalpine forests, specifically in the northern half of the park near the lower reach of the Sand Creek Trail and in the far south just north of California Peak.