cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4225/03/5848910d121e4
title: Where's your phone? A survey of where women aged 15-40 carry their smartphone and related risk perception: a survey and pilot study

description: The data were collected using Survey Monkey. All aspects used in the analyses are included here. The main dataset is from a survey assessing where women carry their smart phones. This identifies the proportion carrying it against or near specific body parts (eg inside the bra, in a pocket below waist level) with a view to providing information needed to do the power calculation for a case-control study (such as breast cancer). Women also provided their opinion of associated health risk. The sensitivity dataset assumes that the group who did not consider there was any risk in the first risk question (and were subsequently asked no further risk questions) would have said 'no' or 'probably not' to further risk questions, if asked. <br>
DOI: 10.6084/m9.figshare.4292216
title: data_qm9.pkl

description: qm9 data set in python2 dictionary
DOI: 10.6084/m9.figshare.4291613
title: Alteration of cerebrovascular haemodynamic patterns due to atrial fibrillation: an in silico investigation

description: Alteration of cerebrovascular haemodynamic patterns due to atrial fibrillation: an in silico investigation, by S. Scarsoglio, A. Saglietto, M. Anselmino, F. Gaita, L. Ridolfi, Journal of the Royal Society Interface, 2017, 14(129): 20170180. doi: 10.1098/rsif.2017.0180<br><br>Raw data of simulations for the cerebral circulation in normal sinus rhythm (NSR) and atrial fibrillation (AF) conditions are available.
DOI: 10.6084/m9.figshare.4291613.v2
title: Alteration of the cerebrovascular hemodynamic patterns due to atrial fibrillation: an in silico investigation

description: Alteration of the cerebrovascular hemodynamic patterns due to atrial fibrillation: an in silico investigation, by S. Scarsoglio, A. Saglietto, M. Anselmino, F. Gaita, L. Ridolfi, Journal of the Royal Society Interface, December 2016.<br><br>Raw data of simulations for the cerebral circulation in normal sinus rhythm (NSR) and atrial fibrillation (AF) conditions are available.
DOI: 10.6084/m9.figshare.4291613.v4
title: Alteration of cerebrovascular haemodynamic patterns due to atrial fibrillation: an in silico investigation

description: Alteration of cerebrovascular haemodynamic patterns due to atrial fibrillation: an in silico investigation, by S. Scarsoglio, A. Saglietto, M. Anselmino, F. Gaita, L. Ridolfi, Journal of the Royal Society Interface, 2017, 14(129): 20170180. doi: 10.1098/rsif.2017.0180<br><br>Raw data of simulations for the cerebral circulation in normal sinus rhythm (NSR) and atrial fibrillation (AF) conditions are available.
DOI: 10.6084/m9.figshare.4291613.v3
title: Alteration of the cerebrovascular hemodynamic patterns due to atrial fibrillation: an in silico investigation

description: Alteration of the cerebrovascular hemodynamic patterns due to atrial fibrillation: an in silico investigation, by S. Scarsoglio, A. Saglietto, M. Anselmino, F. Gaita, L. Ridolfi, Journal of the Royal Society Interface, December 2016.<br><br>Raw data of simulations for the cerebral circulation in normal sinus rhythm (NSR) and atrial fibrillation (AF) conditions are available.
DOI: 10.6084/m9.figshare.4291568
title: Fiber development and matrix production in tissue-engineered menisci using bovine mesenchymal stem cells and fibrochondrocytes

description: Mesenchymal stem cells (MSCs) have been investigated with promising results for meniscus healing and tissue engineering. While MSCs are known to contribute to extracellular matrix (ECM) production, less is known about how MSCs produce and align large organized fibers for application to tissue engineering the meniscus. The goal of this study was to investigate the capability of MSCs to produce and organize ECM molecules compared to meniscal fibrochondrocytes (FCCs). Bovine FCCs and MSCs were encapsulated in an anatomically accurate collagen meniscus using monoculture and co-culture of each cell type. Each meniscus was mechanically anchored at the horns to mimic the physiological fixation by the meniscal entheses. Mechanical fixation generates a static mechanical boundary condition previously shown to induce formation of oriented fiber by FCCs. Samples were cultured for 4 weeks and then evaluated for biochemical composition and fiber development. MSCs increased the glycosaminoglycan (GAG) and collagen production in both co-culture and monoculture groups compared to FCC monoculture. Collagen organization was greatest in the FCC monoculture group. While MSCs had increased matrix production, they lacked the fiber organization capabilities of FCCs. This study suggests that GAG production and fiber formation are linked. Co-culture can be used as a means of balancing the synthetic properties of MSCs and the matrix remodeling capabilities of FCCs for tissue engineering applications.
DOI: 10.6084/m9.figshare.4291481
title: Supplementary Material for: Esophageal Endosonography for the Diagnosis of Intrapulmonary Tumors: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Biopsy-based diagnosis in patients with paraesophageal intrapulmonary tumors suspected of lung cancer is crucial for adequate treatment planning. <b><i>Objective:</i></b> To evaluate the performance of transesophageal endoscopic ultrasound-guided fine-needle aspiration (EUS-FNA) in the diagnosis of intrapulmonary tumors located near or adjacent to the esophagus. <b><i>Methods:</i></b> We performed a systematic review (PROSPERO, CRD42016033737) and searched MEDLINE, Embase, BIOSIS Previews, and Web of Science on September 22, 2016, without date or language restrictions. We included studies that evaluated the yield and/or sensitivity of EUS-FNA for diagnosing intrapulmonary tumors. Yield was defined as the number of patients in whom EUS-FNA made a biopsy-proven diagnosis (malignant or nonmalignant) relative to the total number of patients on whom EUS-FNA was performed. Sensitivity was defined as the number of patients in whom EUS-FNA made a biopsy-proven diagnosis of malignancy relative to the total number of patients in whom the tumor was found to be malignant. We performed a random-effects meta-analysis. <b><i>Results:</i></b> Of 3,320 search results, 11 studies were included. Ten had a high risk of bias. The total number of patients was 313; the proportion of patients with malignancy ranged from 87 to 100% across these studies. The average yield was 0.90 (95% CI 0.82-0.95) and the average sensitivity was 0.92 (0.83-0.96). In the subgroup of prospective studies (<i>n</i> = 3), the average yield was 0.80 (0.56-0.93) and the average sensitivity was 0.83 (0.58-0.95). EUS-FNA-induced complications were reported for 5/256 patients (2.0%) for whom this information was available. <b><i>Conclusions:</i></b> Although the number of high-quality studies is limited, these findings suggest that EUS-FNA is safe and has a high yield for diagnosing intrapulmonary tumors.
DOI: 10.6084/m9.figshare.4291568.v1
title: Fiber Development and Matrix Production in Tissue Engineered Menisci using Bovine Mesenchymal Stem Cells and Fibrochondrocytes

description: Mesenchymal stem cells (MSCs) have been investigated with promising results for meniscus healing and tissue engineering. While MSCs are known to contribute to ECM production, less is known about how MSCs produce and align large organized fibers for application to tissue engineering the meniscus. The goal of this study was to investigate the capability of MSCs to produce and organize extracellular matrix molecules compared to meniscal fibrochondrocytes (FCCs). Bovine FCCs and MSCs were encapsulated in an anatomically accurate collagen meniscus using mono-culture and co-culture of each cell type. Each meniscus was mechanically anchored at the horns to mimic the physiological fixation by the meniscal entheses. Mechanical fixation generates a static mechanical boundary condition previously shown to induce formation of oriented fiber by FCCs. Samples were cultured for 4 weeks and then evaluated for biochemical composition and fiber development. MSCs increased the GAG and collagen production in both co-culture and mono-culture groups compared to FCC mono-culture. Collagen organization was greatest in the FCC mono-culture group. While MSCs had increased matrix production they lacked the fiber organization capabilities of FCCs. This study suggests that GAG production and fiber formation are linked. Co-culture can be used as a means of balancing the synthetic properties of MSCs and the matrix remodeling capabilities of FCCs for tissue engineering applications.
DOI: 10.6084/m9.figshare.4291313
title: Homolaphlyctis polyrhiza annotation peptide FASTA

description: annotation.pep
DOI: 10.6084/m9.figshare.4291310
title: Homolaphlyctis polyrhiza annotation CDS FASTA

description: annotation.cds
DOI: 10.6084/m9.figshare.4291313.v2
title: Homolaphlyctis polyrhiza annotation peptide FASTA

description: annotation.pep
DOI: 10.6084/m9.figshare.4291313.v1
title: annotation.pep

description: annotation.pep
DOI: 10.6084/m9.figshare.4291310.v2
title: Homolaphlyctis polyrhiza annotation CDS FASTA

description: annotation.cds
DOI: 10.6084/m9.figshare.4291310.v1
title: annotation.cds

description: annotation.cds
DOI: 10.6084/m9.figshare.4291283
title: Homolaphlyctis polyrhiza Genome FASTA

description: Genome.fa
DOI: 10.6084/m9.figshare.4291274
title: Homolaphlyctis polyrhiza annotation GFF3

description: annotation.gff3
DOI: 10.6084/m9.figshare.4291283.v1
title: Genome.fa

description: Genome.fa
DOI: 10.6084/m9.figshare.4291271
title: Silene ciliata Sequences

description: Sequences from Kyrkou et al 2015<br>
DOI: 10.6084/m9.figshare.4291271.v1
title: Silene ciliata Sequences

description: Sequences from Kyrkou et al 2015<br>
DOI: 10.6084/m9.figshare.4291274.v1
title: annotation.gff3

description: annotation.gff3
DOI: 10.6084/m9.figshare.4291268
title: SileneCilaita_micros.txt

description: Sequences from Kyrkou et al 2015 PeerJ<br>
DOI: 10.6084/m9.figshare.4291268.v1
title: SileneCilaita_micros.txt

description: Sequences from Kyrkou et al 2015 PeerJ<br>
DOI: 10.6084/m9.figshare.4291160
title: FEniCS-Shells

description: FEniCS-Shells is an open-source library (LGPLv3) that provides a wide range of thin structural models (beams, plates and shells) solved using the finite element method and expressed in the Unified Form Language (UFL) of the FEniCS Project.<br>FEniCS-Shells is described fully in the paper:<br>Simple and extensible plate and shell finite element models through automatic code generation tools, J. S. Hale, M. Brunetti, S. P. A. Bordas, C. Maurini. <em>Computers & Structures</em>, 209, 163-181, doi.org/10.1016/j.compstruc.2018.08.001.<br><br>The version of the code in this figshare repository was submitted in conjunction with the above paper.<br><br><b>Please see https://bitbucket.org/unilucompmech/fenics-shells for the latest version of the code.</b><b><br></b><b>Please see https://fenics-shells.readthedocs.org for the latest version of the documentation.</b><br>
DOI: 10.6084/m9.figshare.4290995
title: Example ptychographic dataset (Figure 5) from A computational framework for ptychographic reconstructions

description: Dataset of a ptychographic diffraction experiment with a laser as source and a USAF resolution target as transmission object
DOI: 10.6084/m9.figshare.4290995.v1
title: Example ptychographic dataset (Figure 5) from A computational framework for ptychographic reconstructions

description: Dataset of a ptychographic diffraction experiment with a laser as source and a USAF resolution target as transmission object
DOI: 10.6084/m9.figshare.4290989
title: Supplementary tables from Independent natural genetic variation of punishment- versus relief-memory

description: Behavioural data as well as results of association analyses
DOI: 10.6084/m9.figshare.4290989.v1
title: Supplementary tables from Independent natural genetic variation of punishment- versus relief-memory

description: Behavioural data as well as results of association analyses
DOI: 10.6084/m9.figshare.4290899
title: Matched HT-LAMP, PCR, 2011 BS-LAMP and 2016 BS-LAMPHep+EDTA Results.xlsx

description: The excel table shows matching data sets comparing results from HTP-LAMP, PCR, Boil and Spin LAMP from 2011 and 2016.
DOI: 10.6084/m9.figshare.4290875
title: Linear Distributed Source Modeling of Local Field Potentials Recorded with Planar Intra-Cortical Arrays

description: This is local field potential data from a planar 8x8 Utah array in primary visual cortex recorded from an awake behaving macaque monkey. The data is organized in the Fieldtrip format (http://www.fieldtriptoolbox.org/reference/ft_datatype_raw) and can be loaded into MATLAB. Visual stimuli where presented while the monkey was fixating on a fixation spot.
DOI: 10.6084/m9.figshare.4290899.v1
title: Matched HT-LAMP, PCR, 2011 BS-LAMP and 2016 BS-LAMPHep+EDTA Results.xlsx

description: The excel table shows matching data sets comparing results from HTP-LAMP, PCR, Boil and Spin LAMP from 2011 and 2016.
DOI: 10.6084/m9.figshare.4290872
title: Exploration of Unknown Map for Gas Searching and Picking up Objects Using Khepera Mobile Robots

description: In this paper, the integrated approach for searching, detecting the source of gas leakage and capturing object using Khepera III mobile robot is introduced. It was tested in natural grid environments as shown in experi- ments but it is usable in vast areas; e.g. houses, factories, and labs to pick up gas victims. Experiments are performed using a master Khepera III robot equipped with a gas sensor and two slave robots equipped with grippers to take the best path to pick up the object. Moreover, this paper proposes an improvement of Albers exploration algorithm to reduce the time required to explore an unknown map with different polygon obsta- cles. The proposed approach aims at minimizing the overall exploration time, making it possible to localize leakage gas source in an efficient way, as demonstrated in V-REP simulation as well as real world experiments. A comparison among both algorithms has shown the effectiveness of the proposed one, where the percentage of performance speedup is about 30% to 57% depending on the size of the map and number of obstacles.
DOI: 10.6084/m9.figshare.4290875.v1
title: Utah Array LFP from V1

description: This is local field potential data from a planar 8x8 Utah array in primary visual cortex recorded from an awake behaving macaque monkey. The data is organized in the Fieldtrip format (http://www.fieldtriptoolbox.org/reference/ft_datatype_raw) and can be loaded into MATLAB. Visual stimuli where presented while the monkey was fixating on a fixation spot.
DOI: 10.6084/m9.figshare.4290866
title: ASCII Data Text Files from Measurement of the Earth's rotation: 720 BC to AD 2015

description: Observational Data and Spline Coefficients: Tables S1-S14 containing the observational data prior to 1600, the extract of lunar occultations from the CDS archive and table S15 containing the coefficients that approximate the spline fit to Delta T.
DOI: 10.5286/isis.e.rb1920034
title: Proton tunneling in the strong hydrogen bonds in the solid state

description: In low dimensional caesium silicate LDS-1 (monoclinic phase of CsHSi2O5), anomalous infrared absorption bands observed at 93, 155, 1210, and 1220 cm-1 are assigned to the vibrational mode of protons, which contribute to the strong hydrogen bonding between terminal oxygen atoms of silicate chain with the OO distance of 2.45 Å. The integrated absorbance (oscillator strength) for those modes is drastically enhanced at low temperatures. The analysis of integrated absorbance employing two different anharmonic double-minimum potentials makes clear that proton tunnelling through the potential barrier yields an energy splitting of the ground state. We propose to employ the neutron Compton (NCS) scattering to observe the onset of the proton tunnelling in a single-crystal specimen of LDS-1.
DOI: 10.6084/m9.figshare.4290839
title: PROS_Itsar Bolo Rangka_Genogram and Narrative_fulltext.pdf

description: In this article, the author present the need for using genogram and a narrative approach in counseling career. The author also described the process of genogram construction step by step to provide knowledge and basic skills for school counselor to helping student to find direction of career choice. In the context of career counselling, genogram can open client insights about themselves and their families, in addition to placing the family as a source of inspiration and expectations in developing plans and determine the direction of career choice of clients for the future.
DOI: 10.6084/m9.figshare.4290848
title: Molecular characterization of a recently identified circovirus in zebra finches (<i>Taeniopygia guttata</i>) associated with immunosuppression and opportunistic infections

description: A recently identified circovirus (family <i>Circoviridae</i>) was detected in 14 zebra finches (<i>Taeniopygia guttata</i>) from seven aviaries and hobbyist breeders using polymerase chain reaction followed by sequencing. Full genome sequences of virus strains from six zebra finches consistently revealed characteristic circoviral genomic features such as a stem-loop structure and two major open reading frames (ORFs) encoding the replication-associated protein and the putative capsid protein. One further ORF encoding a protein of unknown function was additionally identified in all six genomes. Based on full genome nucleotide comparison, zebra finch circovirus was most similar to <i>Finch circovirus</i> originating from a Gouldian finch (<i>Chloebia gouldiae</i>) sharing 78% nucleotide identity. High genetic diversity was detected in the circoviruses from individual zebra finches. Comparison of the six full genome sequences revealed two genetic subgroups, which shared pairwise nucleotide identities between 91.4% and 92.7%. Analyses including partial sequences of the replication-associated protein gene of the zebra finch circovirus strains from all 14 birds supported the existence of two main clusters. Clinical diseases associated with circovirus infection were found in nestlings, fledglings and adult birds and varied from mild to severe with high mortality caused by secondary infections. <i>Macrorhabdus ornithogaster</i> was the most frequently detected opportunistic pathogen. Feathering disorders were seen in two birds. Lymphocytic depletion of the spleen and leukocytopaenia were detected in individual birds, suggesting immunosuppression and a pathogenesis common to circovirus infections in other birds.
DOI: 10.6084/m9.figshare.4290848.v1
title: Molecular characterization of a recently identified circovirus in zebra finches (<i>Taeniopygia guttata</i>) associated with immunosuppression and opportunistic infections

description: A recently identified circovirus (family <i>Circoviridae</i>) was detected in 14 zebra finches (<i>Taeniopygia guttata</i>) from seven aviaries and hobbyist breeders using polymerase chain reaction followed by sequencing. Full genome sequences of virus strains from six zebra finches consistently revealed characteristic circoviral genomic features such as a stem-loop structure and two major open reading frames (ORFs) encoding the replication-associated protein and the putative capsid protein. One further ORF encoding a protein of unknown function was additionally identified in all six genomes. Based on full genome nucleotide comparison, zebra finch circovirus was most similar to <i>Finch circovirus</i> originating from a Gouldian finch (<i>Chloebia gouldiae</i>) sharing 78% nucleotide identity. High genetic diversity was detected in the circoviruses from individual zebra finches. Comparison of the six full genome sequences revealed two genetic subgroups, which shared pairwise nucleotide identities between 91.4% and 92.7%. Analyses including partial sequences of the replication-associated protein gene of the zebra finch circovirus strains from all 14 birds supported the existence of two main clusters. Clinical diseases associated with circovirus infection were found in nestlings, fledglings and adult birds and varied from mild to severe with high mortality caused by secondary infections. <i>Macrorhabdus ornithogaster</i> was the most frequently detected opportunistic pathogen. Feathering disorders were seen in two birds. Lymphocytic depletion of the spleen and leukocytopaenia were detected in individual birds, suggesting immunosuppression and a pathogenesis common to circovirus infections in other birds.
DOI: 10.6084/m9.figshare.4290818
title: Webinar: How to share your data on social media

description: A webinar delivered on 7 December 2016 jointly by figshare and Cranfield University on how and where to share your data on social media post-publication.<br>Included is the recording of the webinar and the slides.<br>For any questions, please contact megan@figshare.com.
DOI: 10.6084/m9.figshare.4290818.v2
title: Webinar: How to share your data on social media

description: A webinar delivered on 7 December 2016 jointly by figshare and Cranfield University on how and where to share your data on social media post-publication.<br>Included is the recording of the webinar and the slides.<br>For any questions, please contact megan@figshare.com.
DOI: 10.6084/m9.figshare.4290806
title: Tree stem data from: Temporal vegetation changes in a Seasonally Dry Tropical Forest enclave in an ecotonal region between Brazil’s savanna and semiarid zones

description: This data represents stem diameters of tree stems from 30 plots of Seasonally Dry Tropical Forest in an enclave forest patch in Minas Gerais, Brazil. Plots 1-10 are plots on the edge, 11-20 are plots 100m into the forest, and plots 21-30 are plots in the interior of the forest (200m from the edge). Data for years 2007 and 2014 are provided.
DOI: 10.6084/m9.figshare.4290818.v1
title: Webinar: How to share your data on social media

description: A webinar delivered on 7 December 2016 jointly by figshare and Cranfield University on how and where to share your data on social media post-publication.<br>Included is the recording of the webinar and the slides.<br>For any questions, please contact megan@figshare.com.
DOI: 10.6084/m9.figshare.4290806.v2
title: Tree stem data from: Temporal vegetation changes in a Seasonally Dry Tropical Forest enclave in an ecotonal region between Brazil’s savanna and semiarid zones

description: This data represents stem diameters of tree stems from 30 plots of Seasonally Dry Tropical Forest in an enclave forest patch in Minas Gerais, Brazil. Plots 1-10 are plots on the edge, 11-20 are plots 100m into the forest, and plots 21-30 are plots in the interior of the forest (200m from the edge). Data for years 2007 and 2014 are provided.
DOI: 10.6084/m9.figshare.4290806.v1
title: Tree stem data for Reis et al. Temporal vegetation changes in a Seasonally Dry Tropical Forest enclave in an ecotonal region between Brazil’s savanna and semiarid zones

description: This data represents stem diameters of tree stems from 30 plots of Seasonally Dry Tropical Forest in an enclave forest patch in Minas Gerais, Brazil. Plots 1-10 are plots on the edge, 11-20 are plots 100m into the forest, and plots 21-30 are plots in the interior of the forest (200m from the edge). Data for years 2007 and 2014 are provided.