cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2sk9k5
title: Occurrence Download

description: A dataset containing 11987804 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Dutch Vegetation Database"
 ]
}

 The dataset includes 11987804 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000079-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15281840
title: Test data supporting the paper 'Interactive, shallow machine-learning based semantic segmentation of 2D and 3D geophyiscal data from archaeological sites'

description: This repository comprises three geophyiscal test datasets supporting the paper 'Interactive, shallow machine-learning based semantic segmentation of 2D and 3D geophysical data from archaeological sites' by Lieven Verdonck, Michel Dabas and Marc Bui (under review).

Technological developments in archaeological geophysics have led to growing data volumes, so that an important bottleneck is now at the stage of data interpretation. Manual delineation and classification of the significant anomalies are time-consuming. In the abovementioned paper, we describe how shallow machine learning (random forests) can be used to interpret near-surface geophysical data from archaeological sites. We show their potential by applying them to the three datasets in this Zenodo repository, and discuss the limitations and possible further improvements.

For information on the provenance of the data and on the methodology of data acquisition and processing, see the paper and the supplementary data.For the software used to perform the machine-learning based semantic segmentation, see also https://github.com/lrverdon/Shallow-Machine-Learning-for-Archaeological-Geophysics
DOI: 10.15468/dl.aj48f9
title: Occurrence Download

description: A dataset containing 11654871 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dicaelus purpuratus Bonelli, 1813, Dicerca asperata (Laporte & Gory, 1837), Dichanthelium dichotomum (L.) Gould, Dichanthelium dichotomum subsp. dichotomum, Dichromorpha viridis (Scudder, 1862), Dicranella staphylina H.Whitehouse, Didymodon australasiae (Hook. & Grev.) R.H.Zander, Diplophyllum andrewsii A.Evans, Diplophyllum apiculatum (A.Evans) Steph., Diplophyllum obtusatum (R.M.Schust.) R.M.Schust., Dipoena appalachia Levi, 1953, Disembolus hyalinus Millidge, 1981, Dolomedes vittatus Walckenaer, 1837, Dorcaschema cinereum (Olivier, 1795), Draba mulliganii Al-Shehbaz, Draba simmonsii Elven & Al-Shehbaz, Dufourea dilatipes Bohart, 1948, Dufourea monardae (Viereck, 1924), Dulichium arundinaceum var. boreale Lepage, Dyschirius pilosus LeConte, 1857, Echinophyllum sachalinense (Lindb.) T.J.O'Brien, Elaphropus capax (LeConte, 1863), Eleocharis fallax Weath., Ellipsoptera cuprascens (LeConte, 1852), Elodium paludosum Austin, Elymus macgregorii R.E.Brooks & J.J.N.Campb., Emydoidea blandingii (Holbrook, 1838), Enallagma traviatum Selys, 1876, Enaphalodes atomarius (Drury, 1773), Encalypta vittiana D.G.Horton, Epeoloides pilosulus (Cresson, 1879), Ephalus latimanus (LeConte, 1847), Epilobium ciliatum var. ecomosum (Fassett) B.Boivin, Erebia pawloskii canadensis B.Warren, 1931, Arthropoda, Arthropoda, Eristalis brousii Williston, 1882, Eschrichtius robustus (Lilljeborg, 1861), Eschrichtius robustus (Lilljeborg, 1861), Etorofus Matsushita, 1933, Eubalaena glacialis (Müller, 1776), Euchalcia borealis Lafontaine & Poole, 1991, Euphyes dukesi dukesi, Euxoa chimoensis Hardwick, 1966, Exoprosopa fasciata Macquart, 1840, Festuca auriculata Drobow, Fissidens exilis Hedw., Fissidens obtusifolius Wilson, Fluminicola virens (I.Lea, 1838))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "Country is Canada",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 32000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 11654871 records from 651 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000056-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/5478
title: colossal-oscar-1.0_urls
DOI: 10.15468/dl.adhs56
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((27.97824 -26.2468,28.11542 -26.2468,28.11542 -26.12688,27.97824 -26.12688,27.97824 -26.2468))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Euphorbia prostrata Aiton"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000094-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fak3nm
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guinea",
 "TaxonKey is Pan troglodytes (Blumenbach, 1775)",
 "Year 2015-2025"
 ]
}

 The dataset includes 198 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000093-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ek4gg
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((27.97824 -26.2468,28.11542 -26.2468,28.11542 -26.12688,27.97824 -26.12688,27.97824 -26.2468))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Euphorbia tirucalli L."
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000095-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tv4fsq
title: Occurrence Download

description: A dataset containing 1577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((7.53075 -35.77427,61.7683 -35.77427,61.7683 3.71066,7.53075 3.71066,7.53075 -35.77427))",
 "TaxonKey is Chromolaena odorata (L.) R.M.King & H.Rob."
 ]
}

 The dataset includes 1577 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000091-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29072786.v1
title: Supplementary Material for: Utilizing Deep Learning to Identify Electron-Dense Deposits in Renal Biopsy Electron Microscopy Images

description: Introduction: Electron microscopy (EM) is a crucial technique for identifying and distinguishing the specific location of deposits within glomeruli. Manual classification of these deposit locations are not only time-consuming but also yields inconsistent results among pathologists. This study aimed to develop a deep learning -based platform to automatically classify the locations of electron-dense deposits in EM images of kidney biopsies.
Methods: We retrospectively collected 4303 EM images at magnifications of 4000X to 8000X from 1039 kidney biopsies performed on native kidneys at the Renal Pathology of King Medical Diagnostics Center of Guangzhou between June 1, 2022, and July 2, 2022. EM images were independently evaluated by pathologists Zhu and Luo for electron-dense deposits, categorized into mesangial, subepithelial, intramembranous, and subendothelial if present. These evaluations served as ground truth for model training and evaluation. Of these, 3443 EM images were allocated to the training group and 860 to the test group. The ResNet18 architecture was selected for our task. To evaluate the model's classification capability, we created a binary classification model to identify the presence of deposits in EM images. Furthermore, we implemented a subnet classification network to predict the probability of mesangial, subepithelial, intramembranous, and subendothelial deposits. Four renal pathologists (two EM pathologists and two comprehensive renal pathologists) were invited to compare their agreement with the deep learning model. Comparing deep learning models against pathologists with Cohen's Kappa and accuracy.
Results: The deep learning model can accurately identify the presence of electron-dense deposits in EM images, with an area under the receiver operating characteristic curve (AUC) of 0.959 and an accuracy of 0.899. The classification subnet trained to identify mesangial, subepithelial, intramembranous, and subendothelial deposits yielded AUCs of 0.928, 0.987, 0.986, and 0.944, with accuracies of 0.880, 0.962, 0.959, and 0.883, respectively. Subepithelial and intramembranous deposits had near-perfect agreement, while mesangial and subendothelial deposits showed substantial agreement with the ground truth. The accuracy of deep learning models in assessing the presence and locations of deposits were lower than that of EM pathologists but higher than that of comprehensive renal pathologists. A web platform has been developed in which users can upload EM images of renal biopsies to receive probabilities regarding the four locations of deposits based on our algorithm.
Conclusion: We successfully developed a web platform for the automated assessment of the locations of electron-dense deposits in kidney biopsy EM images. The performance of this model surpasses that of experienced comprehensive renal pathologists, offering an efficient and reliable tool.
DOI: 10.15468/dl.4kxzz3
title: Occurrence Download

description: A dataset containing 4436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)",
 "Year 2020-2024"
 ]
}

 The dataset includes 4436 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000097-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/hda2qp
title: ACS Income for Domain Generalization

description: This product uses the Census Bureau Data API but is not endorsed or certified by the Census Bureau.

This dataset is a preprocessed version of the American Community Survey (ACS) 2018 Public Use Microdata Sample (PUMS), provided by the U.S. Census Bureau. It is designed for machine learning research on domain generalization. The task is to predict individual income based on demographic and socioeconomic features, with age group used to define domain splits.

Preprocessing was adapted from the Whyshift repository (https://github.com/namkoong-lab/whyshift), which builds on the Folktables project (https://github.com/socialfoundations/folktables). Folktables provides tools to extract and structure ACS PUMS data.

The data remains governed by the U.S. Census Bureau terms of service, available at: https://www.census.gov/data/developers/about/terms-of-service.html.
DOI: 10.15468/dl.6wafj7
title: Occurrence Download

description: A dataset containing 430890 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaenia flavogaster (Thunberg, 1822)"
 ]
}

 The dataset includes 430890 records from 531 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000038-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29072981
title: Survey Data (Pre and Post)

description: These datasets include survey data from visitors before and after their visit at the Nederlands Institute of Sound and Vision.
DOI: 10.6084/m9.figshare.29072792
title: Supplementary Material for: Cervical Lymphadenopathy in Concomitant CML and Tuberculosis: A Case Report

description: Chronic Myeloid Leukemia (CML) is a myeloproliferative disorder characterized by the uncontrolled proliferation of mature and maturing granulocytes in the bone marrow, along with the presence of the Philadelphia chromosome. Lymphadenopathy is an uncommon initial manifestation of CML and is often attributed to the disease itself. However, with the use of tyrosine kinase inhibitors (TKIs), which can affect T-cell mediated immunity, new or persistent lymphadenopathy in CML patients should prompt investigation to rule out opportunistic infections, including tuberculosis (TB), and CML blast phase. We present the case of a 35-year-old male with chronic-phase CML who initially presented with cervical lymphadenopathy, which was initially attributed to CML. However, further evaluation through lymph node biopsy revealed concurrent TB. After initiating appropriate treatment, the lymphadenopathy resolved. This case emphasizes the importance of considering opportunistic infections, such as TB, in CML patients, particularly those on TKI therapy, when lymphadenopathy is present.
DOI: 10.15468/dl.gjhfv8
title: Occurrence Download

description: A dataset containing 376711 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ciconia nigra (Linnaeus, 1758)"
 ]
}

 The dataset includes 376711 records from 1069 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000031-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekb8bt
title: Occurrence Download

description: A dataset containing 623 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lomatia ferruginea",
 "Country is Chile",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 623 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026962-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110615311
title: Persepolis Fortification Elamite Tablet 1467, PF-NN 1467

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 1467 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on reverse and upper edge. Seal impression on reverse and left edge. ❧ [Physical Object Note:] Cracks on reverse. Minor damage on tablet.
DOI: 10.25549/inscriptifact-ouc110615508
title: Persepolis Fortification Elamite Tablet 1590, PF-NN 1590

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 1590 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on reverse and right edge. Seal impression on left edge. ❧ [Physical Object Note:] Upper edge toward flat edge chipped.
DOI: 10.25549/inscriptifact-ouc110615295
title: Persepolis Fortification Elamite Tablet 1467, PF-NN 1467

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 1467 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on reverse and upper edge. Seal impression on reverse and left edge. ❧ [Physical Object Note:] Cracks on reverse. Minor damage on tablet.
DOI: 10.25549/inscriptifact-ouc110615487
title: Persepolis Fortification Elamite Tablet 1590, PF-NN 1590

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 1590 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on reverse and right edge. Seal impression on left edge. ❧ [Physical Object Note:] Upper edge toward flat edge chipped.
DOI: 10.25549/inscriptifact-ouc110615469
title: Persepolis Fortification Elamite Tablet 1525, PF-NN 1525

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 1525 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on upper edge. Seal impression on reverse, upper edge and left edge. ❧ [Physical Object Note:] Minimal damage on tablet.
DOI: 10.25549/inscriptifact-ouc110615271
title: Persepolis Fortification Elamite Tablet 1371, PF-NN 1371

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 1371 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on left edge and upper edge. Seal impression on left edge, upper edge?. ❧ [Physical Object Note:] Minimal damage on tablet.
DOI: 10.25549/inscriptifact-ouc110612148
title: Persepolis Fortification Elamite Tablet 0111, PF 0111

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 0111 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on reverse and left edge. ❧ [Physical Object Note:] Tip of round edge chipped.
DOI: 10.25549/inscriptifact-ouc110615465
title: Persepolis Fortification Elamite Tablet 1590, PF-NN 1590

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 1590 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on reverse and right edge. Seal impression on left edge. ❧ [Physical Object Note:] Upper edge toward flat edge chipped.
DOI: 10.25549/inscriptifact-ouc110612147
title: Persepolis Fortification Elamite Tablet 0111, PF 0111

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 0111 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on reverse and left edge. ❧ [Physical Object Note:] Tip of round edge chipped.
DOI: 10.25549/inscriptifact-ouc110615224
title: Persepolis Fortification Elamite Tablet 1371, PF-NN 1371

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 1371 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on left edge and upper edge. Seal impression on left edge, upper edge?. ❧ [Physical Object Note:] Minimal damage on tablet.
DOI: 10.25549/inscriptifact-ouc110612142
title: Persepolis Fortification Elamite Tablet 0111, PF 0111

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 0111 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on reverse and left edge. ❧ [Physical Object Note:] Tip of round edge chipped.
DOI: 10.25549/inscriptifact-ouc110615210
title: Persepolis Fortification Elamite Tablet 1294, PF-NN 1294

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 1294 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on reverse and left edge. ❧ [Physical Object Note:] Obverse chipped on bottom edge toward round edge. Minor cracks throughout tablet.
DOI: 10.25549/inscriptifact-ouc110612137
title: Persepolis Fortification Elamite Tablet 0111, PF 0111

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 0111 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on reverse and left edge. ❧ [Physical Object Note:] Tip of round edge chipped.
DOI: 10.25549/inscriptifact-ouc110615207
title: Persepolis Fortification Elamite Tablet 1294, PF-NN 1294

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 1294 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on reverse and left edge. ❧ [Physical Object Note:] Obverse chipped on bottom edge toward round edge. Minor cracks throughout tablet.