cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7281/t1w66hpz/phuqrg
title: Figure5_pulse_echo_aligned_local_inter_pinna_peaks.zip

description: Data examining timing of local inter-pinna separation peak with pulse/echo times.
DOI: 10.7281/t1w66hpz/w9e0ql
title: PLoS Biology Readme file.zip

description: A list of all variables used in the following data files.
DOI: 10.7281/t1w66hpz/ypk0j5
title: Figure3_and_Figure4_inter_pinna_separations.zip

description: Data examining the change in inter-pinna separation across target motions.
DOI: 10.7281/t1w66hpz/9cxisy
title: FigureS5_ear_deflection_movement.zip

description: Data on specific motion of the ears with respect to the head.
DOI: 10.7281/t1w66hpz/cg0dw6
title: FigureS4_waggle_degree_vs_target_distance.zip

description: Data on the degree differences in the vertical plane of the two ears with respect to target distance.
DOI: 10.7281/t1w66hpz/elfltb
title: Figure2_head_waggle_data.zip

description: Data on incidence of head waggles across target motions.
DOI: 10.7281/t1w66hpz/fgmm8p
title: FigureS9_end_frequency_by_target_distance.zip

description: Data on end frequency of sonar vocalizations as a function of target distance.
DOI: 10.7281/t1w66hpz/maomzv
title: FigureS3_sonar_sound_groups.zip

description: Data on the proportion of sonar pulses found within a sonar sound group for each variety of target motion.
DOI: 10.7281/t1w66hpz/wqcf97
title: PLoS Biology Readme file.zip

description: A list of all variables used in the following data files.
DOI: 10.5281/zenodo.8040986
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Joseph Anderson Panton, http://www.wikidata.org/entity/Q6281049. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q6281049
DOI: 10.5281/zenodo.8040985
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Joseph Anderson Panton, http://www.wikidata.org/entity/Q6281049. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q6281049
DOI: 10.5281/zenodo.8040994
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by William Fletcher Parish, http://www.wikidata.org/entity/Q106513138. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q106513138
DOI: 10.5281/zenodo.8040993
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by William Fletcher Parish, http://www.wikidata.org/entity/Q106513138. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q106513138
DOI: 10.5281/zenodo.8041004
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Kittie Fenley Parker, http://www.wikidata.org/entity/Q21522642. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21522642
DOI: 10.5281/zenodo.8041003
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Kittie Fenley Parker, http://www.wikidata.org/entity/Q21522642. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21522642
DOI: 10.5281/zenodo.8041033
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Henry Maurice Pendlebury, http://www.wikidata.org/entity/Q21389815. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21389815
DOI: 10.5281/zenodo.8041032
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Henry Maurice Pendlebury, http://www.wikidata.org/entity/Q21389815. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21389815
DOI: 10.5281/zenodo.8041040
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Bo-Hagard Peterson, http://www.wikidata.org/entity/Q21522887. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21522887
DOI: 10.5281/zenodo.8041039
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Bo-Hagard Peterson, http://www.wikidata.org/entity/Q21522887. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21522887
DOI: 10.5281/zenodo.8041042
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Pauline Dy Phon, http://www.wikidata.org/entity/Q16027654. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q16027654
DOI: 10.5281/zenodo.8041041
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Pauline Dy Phon, http://www.wikidata.org/entity/Q16027654. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q16027654
DOI: 10.5281/zenodo.8041046
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Richard Picbauer, http://www.wikidata.org/entity/Q21522975. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21522975
DOI: 10.5281/zenodo.8041044
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Alfred Philpott, http://www.wikidata.org/entity/Q4723291. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q4723291
DOI: 10.5281/zenodo.8041050
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Robert Knud Friedrich Pilger, http://www.wikidata.org/entity/Q71132. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q71132
DOI: 10.5281/zenodo.8041049
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Robert Knud Friedrich Pilger, http://www.wikidata.org/entity/Q71132. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q71132
DOI: 10.5281/zenodo.8041054
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Louis Piré, http://www.wikidata.org/entity/Q6686606. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q6686606
DOI: 10.5281/zenodo.8041053
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Louis Piré, http://www.wikidata.org/entity/Q6686606. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q6686606
DOI: 10.7281/t1c8276w/0qiro5
title: NaturalScenes_Stimuli.zip

description: Natural scene stimuli associated with “Figure-ground organization in visual cortex for natural scenes.” Filenames referenced in the spike count data from Border-ownership_coding_of_natural_scenes.zip.
DOI: 10.7281/t1c8276w/icheau
title: Border-ownership_coding_of_natural_scenes.zip

description: Neural data associated with “Figure-ground organization in visual cortex for natural scenes.” Contains significance information used for publication and neural spike count and individual spike data for the natural scene border-ownership test and the standard square border-ownership test.
DOI: 10.7281/t1c8276w/sx4jxm
title: Border-ownership_coding_of_natural_scenes.zip

description: Neural data associated with “Figure-ground organization in visual cortex for natural scenes.” Contains significance information used for publication and neural spike count and individual spike data for the natural scene border-ownership test and the standard square border-ownership test.
DOI: 10.5281/zenodo.8041002
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Jean Armand Isidore Pancher, http://www.wikidata.org/entity/Q3170415. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q3170415
DOI: 10.5281/zenodo.8041001
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Jean Armand Isidore Pancher, http://www.wikidata.org/entity/Q3170415. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q3170415
DOI: 10.6084/m9.figshare.23519772
title: Untitled Item

description: cutrun
DOI: 10.6084/m9.figshare.23519772.v1
title: Untitled Item

description: cutrun
DOI: 10.5281/zenodo.8015844
title: 179 high quality metagenome-assembled genomes sequences and annotations

description: We analyzed seven sediment samples collected adjacent to ferromanganese nodules from the Clarion–Clipperton Fracture Zone (CCFZ) in the eastern Pacific Ocean. Through deep metagenomic sequencing, assembly, and binning, we reconstructed 179 high quality metagenome-assembled genomes (MAGs). This archive contains these genomes sequences and annotations.
DOI: 10.5281/zenodo.7024881
title: 179 high quality metagenome-assembled genomes sequences and annotations

description: We analyzed seven sediment samples collected adjacent to ferromanganese nodules from the Clarion–Clipperton Fracture Zone (CCFZ) in the eastern Pacific Ocean. Through deep metagenomic sequencing, assembly, and binning, we reconstructed 179 high quality metagenome-assembled genomes (MAGs). This archive contains these genomes sequences and annotations.
DOI: 10.6084/m9.figshare.23519799
title: RS_ATAC_zwd

description: d dddd
DOI: 10.6084/m9.figshare.23519799.v1
title: RS_ATAC_zwd

description: d dddd
DOI: 10.6084/m9.figshare.23519880
title: ES_AT_Nuc

description: dddddd
DOI: 10.6084/m9.figshare.23519880.v1
title: ES_AT_Nuc

description: dddddd
DOI: 10.5281/zenodo.7571412
title: Gene expression dataset of the Spatially Resolved Single-cell Translatomics at Molecular Resolution

description: Here are the gene expression datasets of RIBOmap included in "<strong>Spatially Resolved Single-cell Translatomics at Molecular Resolution</strong>" from Zeng et al. Please refer to the README file for more detailed information. <strong>Abstract</strong> The precise control of mRNA translation is a crucial step in post-transcriptional gene regulation of cellular physiology. However, it remains a major challenge to systematically study mRNA translation at the transcriptomic scale with spatial and single-cell resolution. Here, we report the development of RIBOmap, a three-dimensional (3D) in situ profiling method to detect mRNA translation of thousands of genes simultaneously in intact cells and tissues. By applying RIBOmap to 981 genes in HeLa cells, we revealed a remarkable dependency of translation on cell-cycle stages and subcellular localization. Furthermore, we profiled single-cell translatomes of 5,413 genes in adult mouse brain tissues yielding a spatial cell atlas of 119,173 cells. The pairwise spatial mapping of single-cell translatome and transcriptome in two adjacent mouse brain slices revealed cell-type and brain-region-dependent translational regulation and suggested a translation remodeling during oligodendrocyte lineage maturation. The spatial translatome profiling detected widespread patterns of localized translation in neuronal and glial cells in intact brain tissue networks. Together, RIBOmap presents the first spatially resolved single-cell translatomics technology, accelerating our understanding of protein synthesis in the context of subcellular architecture, cell types, and tissue anatomy.
DOI: 10.5281/zenodo.8041114
title: Gene expression dataset of the Spatially Resolved Single-cell Translatomics at Molecular Resolution

description: Here are the gene expression datasets of RIBOmap included in "<strong>Spatially Resolved Single-cell Translatomics at Molecular Resolution</strong>" from Zeng et al. Please refer to the README file for more detailed information. <strong>Abstract</strong> The precise control of mRNA translation is a crucial step in post-transcriptional gene regulation of cellular physiology. However, it remains a major challenge to systematically study mRNA translation at the transcriptomic scale with spatial and single-cell resolution. Here, we report the development of RIBOmap, a three-dimensional (3D) in situ profiling method to detect mRNA translation of thousands of genes simultaneously in intact cells and tissues. By applying RIBOmap to 981 genes in HeLa cells, we revealed a remarkable dependency of translation on cell-cycle stages and subcellular localization. Furthermore, we profiled single-cell translatomes of 5,413 genes in adult mouse brain tissues yielding a spatial cell atlas of 119,173 cells. The pairwise spatial mapping of single-cell translatome and transcriptome in two adjacent mouse brain slices revealed cell-type and brain-region-dependent translational regulation and suggested a translation remodeling during oligodendrocyte lineage maturation. The spatial translatome profiling detected widespread patterns of localized translation in neuronal and glial cells in intact brain tissue networks. Together, RIBOmap presents the first spatially resolved single-cell translatomics technology, accelerating our understanding of protein synthesis in the context of subcellular architecture, cell types, and tissue anatomy.
DOI: 10.6084/m9.figshare.23271865
title: Tables.zip from Variation in nest-building behaviour: a multi-species approach

description: Researchers have long suggested that animals with greater behavioural flexibility will be more likely to survive in face of environmental changes. However, it is unknown how this varies across species. Nest building is a behaviour directly related to the reproduction and survival of species by conferring protection from external environmental conditions. The study of nests offers a window into the behaviour of birds, and variation in nest morphology is necessarily linked to variation in building behaviours. We test whether variation in nest morphology is phylogenetically conserved by using data on nest morphology from 55 passerine species (&gt;700 specimens) and measuring intraspecific variability in nest structure. We found that species mean and within-species variation in nest morphology are phylogenetically conserved, and that species with domed nests presented higher levels of nest morphology variation than cup nest species. We also revealed that the capacity of species to present innovative behaviours is not linked with how they vary nest morphology . Moreover, we revealed that nests from species with larger variation in clutch size and that are built by single parents are more variable. Our results help in the understanding of how behaviour and extended phenotypes evolve, and highlight the importance of exploring the phylogenetic history of behavioural flexibility when trying to predict the capacity of species to respond to novel challenges.This article is part of the theme issue ‘The evolutionary ecology of nests: a cross-taxon approach’.
DOI: 10.6084/m9.figshare.23271874
title: Tables of results for all trees for the models from Variation in nest-building behaviour: a multi-species approach

description: Researchers have long suggested that animals with greater behavioural flexibility will be more likely to survive in face of environmental changes. However, it is unknown how this varies across species. Nest building is a behaviour directly related to the reproduction and survival of species by conferring protection from external environmental conditions. The study of nests offers a window into the behaviour of birds, and variation in nest morphology is necessarily linked to variation in building behaviours. We test whether variation in nest morphology is phylogenetically conserved by using data on nest morphology from 55 passerine species (&gt;700 specimens) and measuring intraspecific variability in nest structure. We found that species mean and within-species variation in nest morphology are phylogenetically conserved, and that species with domed nests presented higher levels of nest morphology variation than cup nest species. We also revealed that the capacity of species to present innovative behaviours is not linked with how they vary nest morphology . Moreover, we revealed that nests from species with larger variation in clutch size and that are built by single parents are more variable. Our results help in the understanding of how behaviour and extended phenotypes evolve, and highlight the importance of exploring the phylogenetic history of behavioural flexibility when trying to predict the capacity of species to respond to novel challenges.This article is part of the theme issue ‘The evolutionary ecology of nests: a cross-taxon approach’.
DOI: 10.6084/m9.figshare.23271865.v1
title: Tables.zip from Variation in nest-building behaviour: a multi-species approach

description: Researchers have long suggested that animals with greater behavioural flexibility will be more likely to survive in face of environmental changes. However, it is unknown how this varies across species. Nest building is a behaviour directly related to the reproduction and survival of species by conferring protection from external environmental conditions. The study of nests offers a window into the behaviour of birds, and variation in nest morphology is necessarily linked to variation in building behaviours. We test whether variation in nest morphology is phylogenetically conserved by using data on nest morphology from 55 passerine species (&gt;700 specimens) and measuring intraspecific variability in nest structure. We found that species mean and within-species variation in nest morphology are phylogenetically conserved, and that species with domed nests presented higher levels of nest morphology variation than cup nest species. We also revealed that the capacity of species to present innovative behaviours is not linked with how they vary nest morphology . Moreover, we revealed that nests from species with larger variation in clutch size and that are built by single parents are more variable. Our results help in the understanding of how behaviour and extended phenotypes evolve, and highlight the importance of exploring the phylogenetic history of behavioural flexibility when trying to predict the capacity of species to respond to novel challenges.This article is part of the theme issue ‘The evolutionary ecology of nests: a cross-taxon approach’.
DOI: 10.6084/m9.figshare.23271868
title: R code for data analyses from Variation in nest-building behaviour: a multi-species approach

description: Researchers have long suggested that animals with greater behavioural flexibility will be more likely to survive in face of environmental changes. However, it is unknown how this varies across species. Nest building is a behaviour directly related to the reproduction and survival of species by conferring protection from external environmental conditions. The study of nests offers a window into the behaviour of birds, and variation in nest morphology is necessarily linked to variation in building behaviours. We test whether variation in nest morphology is phylogenetically conserved by using data on nest morphology from 55 passerine species (&gt;700 specimens) and measuring intraspecific variability in nest structure. We found that species mean and within-species variation in nest morphology are phylogenetically conserved, and that species with domed nests presented higher levels of nest morphology variation than cup nest species. We also revealed that the capacity of species to present innovative behaviours is not linked with how they vary nest morphology . Moreover, we revealed that nests from species with larger variation in clutch size and that are built by single parents are more variable. Our results help in the understanding of how behaviour and extended phenotypes evolve, and highlight the importance of exploring the phylogenetic history of behavioural flexibility when trying to predict the capacity of species to respond to novel challenges.This article is part of the theme issue ‘The evolutionary ecology of nests: a cross-taxon approach’.