cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7700801.v1
title: Supplementary Table S1-S6, S8.

description: @page { size: 8.5in 11in; margin: 0.79in } p { margin-bottom: 0.1in; direction: ltr; color: #00000a; line-height: 120%; text-align: left; orphans: 2; widows: 2; background: transparent } p.western { font-family: "Liberation Serif", serif; font-size: 12pt; so-language: en-US } p.cjk { font-family: "Noto Sans CJK SC Regular"; font-size: 12pt; so-language: zh-CN } p.ctl { font-family: "FreeSans"; font-size: 12pt; so-language: hi-IN } a:link { color: #0000ff; so-language: zxx; text-decoration: underline } <b>Supplementary </b><b>Table S1. </b>A list of genomes and their accession used for phylogenetic reconstructions. All three datasets are included. <b>Supplementary </b><b>Table S2. </b>Assembly statistics of two herbarium specimens produced QUAST. <b>Supplementary </b><b>Table S3.</b> A taxonomic identification of bins. <b>Supplementary </b><b>Table S4. </b>An abundance of species in bins. The two most abundant bins are highlighted in yellow. <b>Supplementary </b><b>Table S5. </b>A genome completeness BUSCO analysis of <i>Nostoc</i> sp. From herbaria and <i>N. flagelliforme.</i> <b>Supplementary </b><b>Table S6. </b>Average nucleotide identity measured between selected <i>Nostoc</i> genomes. Tetra value, identity based on BLAST (ANIb) and MUMMER (ANim) search are presented. <b>Supplementary </b><b>Table S8. </b>Secondary metabolite profiles of <i>N. flagelliforme</i> CCNUN1 and S2.bin1. Only gene clusters which antiSMASH identified to existing clusters are present.<br><br>
DOI: 10.7284/117210
title: Fluorometer data collected during research cruise AT26-27 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/117209
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT26-27 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/117212
title: Meteorological Station data collected during research cruise AT26-27 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7700717
title: The postcranial skeleton of the basal tapinocephalid dinocephalian <i>Tapinocaninus pamelae</i> (Synapsida: Therapsida) from the South African Karoo Supergroup

description: Dinocephalians form an important component of the Guadalupian basal therapsid faunas of Pangaea. Most research undertaken on this clade has focused on the skull while postcranial research has lagged, largely because of the rarity of sufficiently complete specimens. The discovery of an almost complete skeleton of the basal tapinocephalid dinocephalian <i>Tapinocaninus</i> from the rocks of the lowermost Beaufort Group of South Africa for the first time provides an accurate vertebral count for a dinocephalian as well as morphological information on the appendicular skeleton. The long bones of <i>Tapinocaninus pamelae</i> are autapomorphic in several features within the dinocephalians, and the results enable discussion of some more general aspects of the appendicular skeleton of basal synapsids. Combined, the new data enable a new reconstruction of the posture of tapinocephalids. Although demonstrating several apomorphic characters, the skeleton retains pleisomorphic anatomical features previously known only in pelycosaur-grade synapsids, especially in the axial skeleton. The discovery greatly advances understanding of the postcranial morphology of tapinocephalid dinocephalians and will provide input on the enigmatic phylogenetic relationships of early therapsids.
DOI: 10.7284/117213
title: Meteorological Station data collected during research cruise AT26-27 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7700696
title: Socioeconomic inequality in cancer survival – changes over time. A population-based study, Denmark, 1987–2013

description: <b>Background:</b> Socioeconomic inequality in survival after cancer have been reported in several countries and also in Denmark. Changes in cancer diagnostics and treatment may have changed the gap in survival between affluent and deprived patients and we investigated if the differences in relative survival by income has changed in Danish cancer patients over the past 25 years. <b>Methods:</b> The 1- and 5-year relative survival by income quintile is computed by comparing survival among cancer patients diagnosed 1987–2009 to the survival of a cancer-free matched sample of the background population. The comparison is done within the 15 most common cancers and all cancers combined. The gap in relative survival due to socioeconomic inequality for the period 1987–1991 is compared the period 2005–2009. <b>Results:</b> The relative 5-year survival increased for all 15 cancer sites investigated in the study period. In general, low-income patients diagnosed in 1987–1991 had between 0% and 11% units lower 5-year relative survival compared with high-income patients; however, only four sites (breast, prostate, bladder and head & neck) were statistically different. In patients diagnosed 2005–2009, the gap in 5-year RS was ranging from 2% to 22% units and statistically significantly different for 9 out of 15 sites. The results for 1-year relative survival were similar to the 5-year survival gap. An estimated 22% of all deaths at five years after diagnosis could be avoided had patients in all income groups had same survival as the high-income group. <b>Conclusion:</b> In this nationwide population-based study, we observed that the large improvements in both short- and long-term cancer survival among patients diagnosed 1987–2009. The improvements have been most pronounced for high-income cancer patients, leading to stable or even increasing survival differences between richest and poorest patients. Improving survival among low-income patients would improve survival rates among Danish cancer patients overall and reduce differences in survival when compared to other Western European countries.
DOI: 10.6084/m9.figshare.7700696.v2
title: Socioeconomic inequality in cancer survival – changes over time. A population-based study, Denmark, 1987–2013

description: <b>Background:</b> Socioeconomic inequality in survival after cancer have been reported in several countries and also in Denmark. Changes in cancer diagnostics and treatment may have changed the gap in survival between affluent and deprived patients and we investigated if the differences in relative survival by income has changed in Danish cancer patients over the past 25 years. <b>Methods:</b> The 1- and 5-year relative survival by income quintile is computed by comparing survival among cancer patients diagnosed 1987–2009 to the survival of a cancer-free matched sample of the background population. The comparison is done within the 15 most common cancers and all cancers combined. The gap in relative survival due to socioeconomic inequality for the period 1987–1991 is compared the period 2005–2009. <b>Results:</b> The relative 5-year survival increased for all 15 cancer sites investigated in the study period. In general, low-income patients diagnosed in 1987–1991 had between 0% and 11% units lower 5-year relative survival compared with high-income patients; however, only four sites (breast, prostate, bladder and head & neck) were statistically different. In patients diagnosed 2005–2009, the gap in 5-year RS was ranging from 2% to 22% units and statistically significantly different for 9 out of 15 sites. The results for 1-year relative survival were similar to the 5-year survival gap. An estimated 22% of all deaths at five years after diagnosis could be avoided had patients in all income groups had same survival as the high-income group. <b>Conclusion:</b> In this nationwide population-based study, we observed that the large improvements in both short- and long-term cancer survival among patients diagnosed 1987–2009. The improvements have been most pronounced for high-income cancer patients, leading to stable or even increasing survival differences between richest and poorest patients. Improving survival among low-income patients would improve survival rates among Danish cancer patients overall and reduce differences in survival when compared to other Western European countries.
DOI: 10.6084/m9.figshare.7700717.v2
title: The postcranial skeleton of the basal tapinocephalid dinocephalian <i>Tapinocaninus pamelae</i> (Synapsida: Therapsida) from the South African Karoo Supergroup

description: Dinocephalians form an important component of the Guadalupian basal therapsid faunas of Pangaea. Most research undertaken on this clade has focused on the skull while postcranial research has lagged, largely because of the rarity of sufficiently complete specimens. The discovery of an almost complete skeleton of the basal tapinocephalid dinocephalian <i>Tapinocaninus</i> from the rocks of the lowermost Beaufort Group of South Africa for the first time provides an accurate vertebral count for a dinocephalian as well as morphological information on the appendicular skeleton. The long bones of <i>Tapinocaninus pamelae</i> are autapomorphic in several features within the dinocephalians, and the results enable discussion of some more general aspects of the appendicular skeleton of basal synapsids. Combined, the new data enable a new reconstruction of the posture of tapinocephalids. Although demonstrating several apomorphic characters, the skeleton retains pleisomorphic anatomical features previously known only in pelycosaur-grade synapsids, especially in the axial skeleton. The discovery greatly advances understanding of the postcranial morphology of tapinocephalid dinocephalians and will provide input on the enigmatic phylogenetic relationships of early therapsids.
DOI: 10.7284/117215
title: Radiometer data collected during research cruise AT26-27 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7700696.v1
title: Socioeconomic inequality in cancer survival – changes over time. A population-based study, Denmark, 1987–2013

description: <b>Background:</b> Socioeconomic inequality in survival after cancer have been reported in several countries and also in Denmark. Changes in cancer diagnostics and treatment may have changed the gap in survival between affluent and deprived patients and we investigated if the differences in relative survival by income has changed in Danish cancer patients over the past 25 years. <b>Methods:</b> The 1- and 5-year relative survival by income quintile is computed by comparing survival among cancer patients diagnosed 1987–2009 to the survival of a cancer-free matched sample of the background population. The comparison is done within the 15 most common cancers and all cancers combined. The gap in relative survival due to socioeconomic inequality for the period 1987–1991 is compared the period 2005–2009. <b>Results:</b> The relative 5-year survival increased for all 15 cancer sites investigated in the study period. In general, low-income patients diagnosed in 1987–1991 had between 0% and 11% units lower 5-year relative survival compared with high-income patients; however, only four sites (breast, prostate, bladder and head & neck) were statistically different. In patients diagnosed 2005–2009, the gap in 5-year RS was ranging from 2% to 22% units and statistically significantly different for 9 out of 15 sites. The results for 1-year relative survival were similar to the 5-year survival gap. An estimated 22% of all deaths at five years after diagnosis could be avoided had patients in all income groups had same survival as the high-income group. <b>Conclusion:</b> In this nationwide population-based study, we observed that the large improvements in both short- and long-term cancer survival among patients diagnosed 1987–2009. The improvements have been most pronounced for high-income cancer patients, leading to stable or even increasing survival differences between richest and poorest patients. Improving survival among low-income patients would improve survival rates among Danish cancer patients overall and reduce differences in survival when compared to other Western European countries.
DOI: 10.6084/m9.figshare.7700717.v1
title: The postcranial skeleton of the basal tapinocephalid dinocephalian <i>Tapinocaninus pamelae</i> (Synapsida: Therapsida) from the South African Karoo Supergroup

description: Dinocephalians form an important component of the Guadalupian basal therapsid faunas of Pangaea. Most research undertaken on this clade has focused on the skull while postcranial research has lagged, largely because of the rarity of sufficiently complete specimens. The discovery of an almost complete skeleton of the basal tapinocephalid dinocephalian <i>Tapinocaninus</i> from the rocks of the lowermost Beaufort Group of South Africa for the first time provides an accurate vertebral count for a dinocephalian as well as morphological information on the appendicular skeleton. The long bones of <i>Tapinocaninus pamelae</i> are autapomorphic in several features within the dinocephalians, and the results enable discussion of some more general aspects of the appendicular skeleton of basal synapsids. Combined, the new data enable a new reconstruction of the posture of tapinocephalids. Although demonstrating several apomorphic characters, the skeleton retains pleisomorphic anatomical features previously known only in pelycosaur-grade synapsids, especially in the axial skeleton. The discovery greatly advances understanding of the postcranial morphology of tapinocephalid dinocephalians and will provide input on the enigmatic phylogenetic relationships of early therapsids.
DOI: 10.7284/117216
title: Radiometer data collected during research cruise AT26-27 using a Eppley PSP instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/117217
title: Water Temperature data collected during research cruise AT26-27 using a Sea-Bird SBE-48 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7700636
title: The effect of facial expression on contrast sensitivity: a behavioural investigation and extension of Hedger, Adams & Garner (2015).

description: Three datasets for 'The effect of facial expression on contrast sensitivity: a behavioural investigation and extension of Hedger, Adams & Garner (2015)' manuscript: (1) visual contrast thresholds for facial stimuli, (2) Calculated effective contrast values for facial stimuli from 4 face databases, (3) face detection thresholds for facial stimuli when normalised for physical contrast or presented in their normal, raw format.
DOI: 10.7284/117214
title: TSG (Thermosalinograph) data collected during research cruise AT26-27 using a Sea-Bird SBE-45 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.22023/mdx.7700624
title: 2013SilverStudioCorrespArchiveList.pdf

description: Silver Studio Correspondence Archive list. This lists some of the correspondence with or about designers and staff at the Silver Studio, as well as correspondence with manufacturers and stockists. It covers the period from about 1884 to 1944.
DOI: 10.22023/mdx.7700624.v1
title: 2013SilverStudioCorrespArchiveList.pdf

description: Silver Studio Correspondence Archive list. This lists some of the correspondence with or about designers and staff at the Silver Studio, as well as correspondence with manufacturers and stockists. It covers the period from about 1884 to 1944.
DOI: 10.6084/m9.figshare.7700636.v1
title: The effect of facial expression on contrast sensitivity: a behavioural investigation and extension of Hedger, Adams & Garner (2015).

description: Three datasets for 'The effect of facial expression on contrast sensitivity: a behavioural investigation and extension of Hedger, Adams & Garner (2015)' manuscript: (1) visual contrast thresholds for facial stimuli, (2) Calculated effective contrast values for facial stimuli from 4 face databases, (3) face detection thresholds for facial stimuli when normalised for physical contrast or presented in their normal, raw format.
DOI: 10.7284/117220
title: Multiplexed data collected during research cruise AT26-28 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7700603
title: 3DGRT_TRACES_EPSG4979_v2.zip

description: Points from a multitraces from a common GNSS device stored on a Shapefile. Reference system is EPSG 4979 and includes latitude, longitude, ellipsoidal height, horizontal and vertical precision, trace identifier and direction of capture.
DOI: 10.6084/m9.figshare.7700606
title: 3DGRT_TRACES_EPSG25830_v2.zip

description: Points from a multitraces from a common GNSS device stored on a Shapefile. Reference system is EPSG 25830 and includes Easting (X coordinate), Northing (Y coordinate), ellipsoidal height, horizontal and vertical precision, trace identifier and direction of capture.
DOI: 10.6084/m9.figshare.7700597
title: 3DGRT_AXIS_EPSG25830_v2.zip

description: Points precise derived from a sequence of Geodetic GNSS device stored on a Shapefile. Reference system is EPSG 25830 and includes Easting (X coordinate), Northing (Y coordinate), ellipsoidal height, direction of capture and precision of the observation.
DOI: 10.6084/m9.figshare.7700606.v1
title: 3DGRT_TRACES_EPSG25830_v2.zip

description: Points from a multitraces from a common GNSS device stored on a Shapefile. Reference system is EPSG 25830 and includes Easting (X coordinate), Northing (Y coordinate), ellipsoidal height, horizontal and vertical precision, trace identifier and direction of capture.
DOI: 10.7284/117219
title: Fluorometer data collected during research cruise AT26-28 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7700594
title: S. cerevisiae PIC-core Mediator at 5.8 Å resolution Chimera file

description: adapted from Schilbach S et al. Nature. 2017 Nov 9;551(7679):204-209. doi: 10.1038/nature24282EMD-3850 PDB 5OQM<br><br>Chimera file corresponding to Figure 2A of my review http://www.biochemsoctrans.org/content/early/2019/02/06/BST20180608.long<br>
DOI: 10.6084/m9.figshare.7700597.v1
title: 3DGRT_AXIS_EPSG25830_v2.zip

description: Points precise derived from a sequence of Geodetic GNSS device stored on a Shapefile. Reference system is EPSG 25830 and includes Easting (X coordinate), Northing (Y coordinate), ellipsoidal height, direction of capture and precision of the observation.
DOI: 10.6084/m9.figshare.7700591
title: 3DGRT_AXIS_EPSG4979_v2.zip

description: Points precise derived from a sequence of Geodetic GNSS device stored on a Shapefile. Reference system is EPSG 4979 and includes latitude, longitude, ellipsoidal height, direction of capture and horizontal and height precision
DOI: 10.6084/m9.figshare.7700594.v2
title: S. cerevisiae PIC-core Mediator at 5.8 Å resolution Chimera file

description: adapted from Schilbach S et al. Nature. 2017 Nov 9;551(7679):204-209. doi: 10.1038/nature24282EMD-3850 PDB 5OQM<br><br>Chimera file corresponding to Figure 2A of my review http://www.biochemsoctrans.org/content/early/2019/02/06/BST20180608.long<br>
DOI: 10.6084/m9.figshare.7700603.v1
title: 3DGRT_TRACES_EPSG4979_v2.zip

description: Points from a multitraces from a common GNSS device stored on a Shapefile. Reference system is EPSG 4979 and includes latitude, longitude, ellipsoidal height, horizontal and vertical precision, trace identifier and direction of capture.
DOI: 10.6084/m9.figshare.7700591.v1
title: 3DGRT_AXIS_EPSG4979_v2.zip

description: Points precise derived from a sequence of Geodetic GNSS device stored on a Shapefile. Reference system is EPSG 4979 and includes latitude, longitude, ellipsoidal height, direction of capture and horizontal and height precision
DOI: 10.7284/117218
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT26-28 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.21954/ou.rd.7700579
title: Survey into information load in online interaction - derived personas

description: This file contains details of user personas derived from the survey published at https://openuniversity.onlinesurveys.ac.uk/infoload in August 2018 (JISC survey ID 373720).
DOI: 10.6084/m9.figshare.7700576
title: An ensemble method for multi-type Gram-negative bacterial secreted protein prediction by integrating different PSSM-based features

description: In Gram-negative bacteria, a wide range of proteins are secreted by highly specialized secretion systems. These secreted proteins play essential roles in the response of bacteria to their environment and also in several physiological processes such as adhesion, pathogenicity, adaptation and survival. Therefore, identifying secreted proteins in Gram-negative bacteria may assist in understanding the secretion mechanism and development of new antimicrobial strategies. Considering that a single-feature model is less likely to comprehensively cover this information, three kinds of feature models were used in this paper to represent protein samples by composition analysis, correlation analysis and smoothing encoding method on position-specific scoring matrix profiles. A support vector machine-based ensemble method with these hybrid features was developed to predict multi-type Gram-negative bacterial secreted proteins. Finally, our method achieves overall accuracies of 97.09% and 96.51% using an independent dataset test and jackknife test on a public test dataset, which are 3.49% and 2.32% higher, respectively, than results obtained by other methods. These results show the effectiveness and stability of the proposed ensemble method. It is anticipated that our method will provide useful information for further research on bacterial secreted proteins and secreted systems.
DOI: 10.6084/m9.figshare.7700582
title: Supplementary Table from The earliest equatorial record of frogs from the Late Triassic of Arizona

description: Table of CT scanning parameters for specimens included in this work.
DOI: 10.21954/ou.rd.7700579.v1
title: Survey into information load in online interaction - derived personas

description: This file contains details of user personas derived from the survey published at https://openuniversity.onlinesurveys.ac.uk/infoload in August 2018 (JISC survey ID 373720).