cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27266808
title: FVFV.xlsx <b>Impact of enhanced </b><b><i>phoP</i></b><b> expression on tuberculous meningitis pathogenesis</b>

description: We evaluated the functional impact of enhanced <i>phoP</i> expression on the development of tuberculous meningitis, using Zebrafish-<i>Mycobacterium marinum</i> model. Blue fluorescent <i>M. marinum </i>strains<i>, </i>with (T<i>Mm</i>) and without (W<i>Mm</i>) increased expression of <i>phoP</i> of <i>M. tuberculosis, </i>were constructed and used to infect zebrafish. The effects of T<i>Mm </i>and W<i>Mm </i>on the zebrafish were then assessed and compared.<br>
DOI: 10.15468/dl.pwqqq9
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Neomonachus tropicalis (Gray, 1850)"
 ]
}

 The dataset includes 101 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026773-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13957182
title: Forschungsdaten zur Masterarbeit: Forschungsdaten der Sprach- und Textwissenschaften – Ist die Publikation in Fachrepositorien zur Praxis geworden?

description: Upload contents:



Datenvisualisierung: Visualization of the retrieved and refined metadata records from CLARIN (retrieved: 2024-06-20).

research_data_repositories: Application to retrieve and visualize metadata from CLARIN research data repositories in Germany for an explorative study on linguistic research data.
DOI: 10.5281/zenodo.13957183
title: Forschungsdaten zur Masterarbeit: Forschungsdaten der Sprach- und Textwissenschaften – Ist die Publikation in Fachrepositorien zur Praxis geworden?

description: Upload contents:



Datenvisualisierung: Visualization of the retrieved and refined metadata records from CLARIN (retrieved: 2024-06-20).

research_data_repositories: Application to retrieve and visualize metadata from CLARIN research data repositories in Germany for an explorative study on linguistic research data.
DOI: 10.5281/zenodo.13960803
title: D3.10 - Users document for methods and models of the long-term coastline evolution.

description: The D3.10, related to Task 3.5 and entitled "User Document for Methods and Models of the Long-term Coastline Evolution," is a WP3 deliverable, specifically a report describing the methods and models used to study long-term morpho-dynamic processes in a climate-change scenario.
DOI: 10.5281/zenodo.13960804
title: D3.10 - Users document for methods and models of the long-term coastline evolution.

description: The D3.10, related to Task 3.5 and entitled "User Document for Methods and Models of the Long-term Coastline Evolution," is a WP3 deliverable, specifically a report describing the methods and models used to study long-term morpho-dynamic processes in a climate-change scenario.
DOI: 10.15468/dl.c7t5c4
title: Occurrence Download

description: A dataset containing 9987 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Erignathus barbatus (Erxleben, 1777)"
 ]
}

 The dataset includes 9987 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026775-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjjnd9
title: Occurrence Download

description: A dataset containing 750 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Histriophoca fasciata (Zimmermann, 1783)"
 ]
}

 The dataset includes 750 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026776-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7gauv
title: Occurrence Download

description: A dataset containing 802725 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aquila chrysaetos (Linnaeus, 1758)"
 ]
}

 The dataset includes 802725 records from 798 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026725-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kgts3
title: Occurrence Download

description: A dataset containing 3181 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pagophilus groenlandicus (Erxleben, 1777)"
 ]
}

 The dataset includes 3181 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026778-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6e8ns
title: Occurrence Download

description: A dataset containing 1189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ommatophoca rossii Gray, 1844"
 ]
}

 The dataset includes 1189 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026777-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7c7eky
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (Spain, Portugal)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Erinaceus europaeus Linnaeus, 1758",
 "Year 1000-1970"
 ]
}

 The dataset includes 23 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026779-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25392/leicester.data.26781547
title: MenW GWAS Phase Variation Data

description: This repository contains the phase variation data for a set of 163 Neisseria meningitidis MenW:cc11 isolates that were subject to analysis of variation for 11 phenotypic traits from 6 assays (biofilm formation, growth in BHI media, growth in RPMI media, adhesion to A549 eukaryotic cells, release of lactate dehydrogenase activity and a modified serum bactericidal assay). The phase variation data contained in the manuscript associated with this data includes both the repeat numbers and expression states for 11 genes - <i>p</i><i>orA</i>, <i>fetA</i>, <i>nadA</i>, <i>hmbR</i>, <i>hpuA</i>, <i>n</i><i>alP</i>, <i>m</i><i>spA</i>, <i>pilC1</i>, <i>pilC2</i>, <i>modA</i> and <i>modB</i>. For the first nine of these genes, this data was obtained from a previous publication. Nevertheless, the repeat numbers of these genes were validate by GeneScan analysis of the isolates stored on the two sets of starter plates used as the inoculums for the phenotypic assays. For the <i>modA</i> and <i>modB</i> genes, <i>de novo</i> data was generated by GeneScan analyses from these DNA extracts. This repository contains the raw gene files and analyses of this raw data.GeneScan assays were performed using mixing of two to three genes or in some cases individual genes. GeneScan assays involve PCR amplification of the repeat tracts with fluorescently tagged primers and electrophoresis of these products on an auto sequencer. The outputs files (.ab1 or .abi) from the auotsequencer were analysed using PeakScanner on the ThermoFisher website. The files in this repository include the auto sequencer files and Excel files showing how PCR products sizes were converted into repeat numbers and expression states. Data were compared to previously published genomic analyses of these repeat tracts. In some cases PCR products were sequenced by Sanger sequencing to determine the repeat number. This genomic and sequence data was utilised in assigning repeats to fragments of specific sizes. Some alignments of relevant repeat tracts are also included in this database.Alignments Folder. This folder contains seven sub-folders that contain the alignment data for a specific PV gene. Separate alignments for carriage and disease isolates are provided. Alignments may include sequences upstream and downstream of the repeat tract (required due to contiguous breaks within the repeat tract) and of sequences spanning the repeat tract. All data was generated by performing BLAST searches within the Neisseria PubMLST database where all the genome sequences are available.MenW-I+II-GeneScan-data Folder. This folder contains three sub-folders - Carriage, Disease and ModA-ModB. The sub-folders contain a folder with a series of Excel files that document the analyses of the PV genes for the plate sets I and II. A separate folder contains auto sequencer output files (.ab1 or .abi) for each of the GeneScan runs.Sequence-Data folder. This folder contains dideoxysequence files for some of the repeat tracts.
DOI: 10.25392/leicester.data.26781547.v1
title: MenW GWAS Phase Variation Data

description: This repository contains the phase variation data for a set of 163 Neisseria meningitidis MenW:cc11 isolates that were subject to analysis of variation for 11 phenotypic traits from 6 assays (biofilm formation, growth in BHI media, growth in RPMI media, adhesion to A549 eukaryotic cells, release of lactate dehydrogenase activity and a modified serum bactericidal assay). The phase variation data contained in the manuscript associated with this data includes both the repeat numbers and expression states for 11 genes - <i>p</i><i>orA</i>, <i>fetA</i>, <i>nadA</i>, <i>hmbR</i>, <i>hpuA</i>, <i>n</i><i>alP</i>, <i>m</i><i>spA</i>, <i>pilC1</i>, <i>pilC2</i>, <i>modA</i> and <i>modB</i>. For the first nine of these genes, this data was obtained from a previous publication. Nevertheless, the repeat numbers of these genes were validate by GeneScan analysis of the isolates stored on the two sets of starter plates used as the inoculums for the phenotypic assays. For the <i>modA</i> and <i>modB</i> genes, <i>de novo</i> data was generated by GeneScan analyses from these DNA extracts. This repository contains the raw gene files and analyses of this raw data.GeneScan assays were performed using mixing of two to three genes or in some cases individual genes. GeneScan assays involve PCR amplification of the repeat tracts with fluorescently tagged primers and electrophoresis of these products on an auto sequencer. The outputs files (.ab1 or .abi) from the auotsequencer were analysed using PeakScanner on the ThermoFisher website. The files in this repository include the auto sequencer files and Excel files showing how PCR products sizes were converted into repeat numbers and expression states. Data were compared to previously published genomic analyses of these repeat tracts. In some cases PCR products were sequenced by Sanger sequencing to determine the repeat number. This genomic and sequence data was utilised in assigning repeats to fragments of specific sizes. Some alignments of relevant repeat tracts are also included in this database.Alignments Folder. This folder contains seven sub-folders that contain the alignment data for a specific PV gene. Separate alignments for carriage and disease isolates are provided. Alignments may include sequences upstream and downstream of the repeat tract (required due to contiguous breaks within the repeat tract) and of sequences spanning the repeat tract. All data was generated by performing BLAST searches within the Neisseria PubMLST database where all the genome sequences are available.MenW-I+II-GeneScan-data Folder. This folder contains three sub-folders - Carriage, Disease and ModA-ModB. The sub-folders contain a folder with a series of Excel files that document the analyses of the PV genes for the plate sets I and II. A separate folder contains auto sequencer output files (.ab1 or .abi) for each of the GeneScan runs.Sequence-Data folder. This folder contains dideoxysequence files for some of the repeat tracts.
DOI: 10.5281/zenodo.11145442
title: Dataset for hydrate particle number and area calculation, and hydrate coarsening videos

description: There are three series (24 files) of data on day 4, 14, 24, 34, 44, 54, and 64:

1.      Hydrate particle number in open area (7 files):

·         4 days-particle number.pptx

·         14 days-particle number.pptx

·         24 days-particle number.pptx

·         34 days-particle number.pptx

·         44 days-particle number.pptx

·         54 days-particle number.pptx

·         64 days-particle number.pptx

 

2.      Hydrate saturation calculation in porous media (15 files):

·         4 days-area pixels.xlsx

·         4 days-area pixels.pptx

·         14 days-area pixels.xlsx

·         14 days-area pixels.pptx

·         24 days-area pixels.xlsx

·         24 days-area pixels.pptx

·         34 days-area pixels.xlsx

·         34 days-area pixels.pptx

·         44 days-area pixels.xlsx

·         44 days-area pixels.pptx

·         54 days-area pixels.xlsx

·         54 days-area pixels.pptx

·         64 days-area pixels.xlsx

·         64 days-area pixels.pptx

·         Particle number and SH variation.xlsx

 

3.      Videos of the hydrate coarsening and sintering process (2 files):

·         Hydrate coarsening and sintering in open area.mp4

·         Hydrate coarsening and sintering in porous media.mp4
DOI: 10.5281/zenodo.13960754
title: Dataset for hydrate particle number and area calculation, and hydrate coarsening videos

description: There are three series (24 files) of data on day 4, 14, 24, 34, 44, 54, and 64:

1.      Hydrate particle number in open area (7 files):

·         4 days-particle number.pptx

·         14 days-particle number.pptx

·         24 days-particle number.pptx

·         34 days-particle number.pptx

·         44 days-particle number.pptx

·         54 days-particle number.pptx

·         64 days-particle number.pptx

 

2.      Hydrate saturation calculation in porous media (15 files):

·         4 days-area pixels.xlsx

·         4 days-area pixels.pptx

·         14 days-area pixels.xlsx

·         14 days-area pixels.pptx

·         24 days-area pixels.xlsx

·         24 days-area pixels.pptx

·         34 days-area pixels.xlsx

·         34 days-area pixels.pptx

·         44 days-area pixels.xlsx

·         44 days-area pixels.pptx

·         54 days-area pixels.xlsx

·         54 days-area pixels.pptx

·         64 days-area pixels.xlsx

·         64 days-area pixels.pptx

·         Particle number and SH variation.xlsx

 

3.      Videos of the hydrate coarsening and sintering process (2 files):

·         Hydrate coarsening and sintering in open area.mp4

·         Hydrate coarsening and sintering in porous media.mp4
DOI: 10.15468/dl.vn9dfb
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Loris lydekkerianus Cabrera, 1908"
 ]
}

 The dataset includes 198 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026780-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3cum4
title: Occurrence Download

description: A dataset containing 1111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cystophora cristata (Erxleben, 1777)"
 ]
}

 The dataset includes 1111 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026781-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4vwpv
title: Occurrence Download

description: A dataset containing 861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Quercus ilex L.)",
 "Country is one of (Spain)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 861 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026782-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u7k426
title: Occurrence Download

description: A dataset containing 160506 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-117.07494 31.21188,-117.01161 31.21188,-117.01161 31.33855,-117.07494 31.33855,-117.07494 31.21188))",
 "Geometry POLYGON((-119.92485 21.71216,-90.79236 21.71216,-90.79236 33.80847,-103.52199 33.55515,-119.92485 21.71216))"
 ]
 },
 "TaxonKey is Oxyura jamaicensis (J.F.Gmelin, 1789)"
 ]
}

 The dataset includes 160506 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026748-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bunz9z
title: Occurrence Download

description: A dataset containing 3080 records in GBIF matching the query:
SELECT "year", GBIF_EEARGCode( 1000, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000) ) AS eeaCellCode, classKey, class, familyKey, family, COUNT(*) AS occurrences, MIN(COALESCE(coordinateUncertaintyInMeters, 1000)) AS minCoordinateUncertaintyInMeters, MIN(GBIF_TemporalUncertainty(eventDate)) AS minTemporalUncertainty, IF(ISNULL(classKey), NULL, SUM(COUNT(*)) OVER (PARTITION BY classKey)) AS classCount FROM occurrence WHERE occurrenceStatus = 'PRESENT' AND continent = 'EUROPE' AND "year" &gt;= 1900 AND hasCoordinate = TRUE AND familyKey IS NOT NULL AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND LOWER(identificationVerificationStatus) NOT IN ( 'unverified', 'unvalidated', 'not validated', 'under validation', 'not able to validate', 'control could not be conclusive due to insufficient knowledge', 'uncertain', 'unconfirmed', 'unconfirmed - not reviewed', 'validation requested' )AND familyKey IN (5666)GROUP BY "year", eeaCellCode, classKey, class, familyKey, family ORDER BY "year" DESC, eeaCellCode ASC, familyKey ASC;

 The dataset's 3080 records were derived from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026740-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x3cvbe
title: Occurrence Download

description: A dataset containing 718905 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasGeospatialIssue is false",
 "Year 2024-2024"
 ]
}

 The dataset includes 718905 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026755-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kkfvg
title: Occurrence Download

description: A dataset containing 377199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phocoena phocoena (Linnaeus, 1758)"
 ]
}

 The dataset includes 377199 records from 413 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026757-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lqd9pi
title: Occurrence Download

description: A dataset containing 67644 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "DecimalLatitude is greater than 38.6149496827533",
 "DecimalLatitude is less than 39.1567050422766",
 "DecimalLongitude is greater than -77.390486695585",
 "DecimalLongitude is less than -76.6976099271328"
 ]
}

 The dataset includes 67644 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006796-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kby8ax
title: Occurrence Download

description: A dataset containing 41035 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Sabiaceae"
 ]
}

 The dataset includes 41035 records from 502 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015419-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5fdyu
title: Occurrence Download

description: A dataset containing 606 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-0.57129 50.49316,-5.8667 49.24072,-2.60376 44.54956,-1.57654 42.8302,3.96057 41.91833,7.75085 43.37952,7.32788 45.62622,7.93213 48.49365,8.44849 49.01001,6.14685 49.68567,6.07544 50.37231,6.33911 52.59155,5.76782 53.09692,5.41626 53.25073,2.3291 51.89941,1.33484 50.7074,-0.57129 50.49316))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Carthamus tinctorius L."
 ]
}

 The dataset includes 606 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058967-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-220495
title: The Magazine of the Romanian Pentecostal Church, 1968, vol. 16, no. 7-8 = Buletinul Cultului Penticostal din Romania, 1968, anul XVI, nr 7-8

description: [description english/roman)] The Magazine of the Pentecostal Church is the periodical, official publication of the Romanian Pentecostal Church during communist times. It has been published between 1953 and 1989.
DOI: 10.15468/dl.byvkhf
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rita rita (Hamilton, 1822)"
 ]
}

 The dataset includes 125 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056262-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywqvx6
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Acridotheres melanopterus",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 50 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057797-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.