cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.f12d430/2
title: Secondary feeding experiment: Survival data for 3 Timema population fed with 3 novel plants

description: We performed a feeding experiment using 3 Timema populations from 3 different Timema species. We measured survival of multiple individuals from each of these populations, after feeding them during ten days with 3 plants (i.e., 3 feeding treatments: Rhus ovata (sumac), Baccharis pilularis (coyote), Artemisia californica (sage)) currently not used, to our knowledge, by stick insects of the Timema genus under natural conditions.
DOI: 10.5061/dryad.f12d430/3
title: Phenolic and terpenic chemical composition of 7 Timema host plants

description: We extracted and quantified compounds in the phenolic and terpene classes of secondary metabolites from leaves of seven Timema stick insects host plant species included in a feeding experiments (i.e., Ceanothus thyrsiflorus (lil), Adenostoma fasciculatum (cha), Quercus agrifolia (oak), Arctostaphylos glauca (mz), Pseudotsuga menziesii (df), Abies concolor (wf), Sequoia sempervirens (rdw); see Table 1 of the related article), for terpenes and phenolics, respectively. For each plant species, we extracted compounds from five independent replicates for both phenols and terpenes (See the related article to know more about the used Methods).
DOI: 10.5061/dryad.g66247g/1
title: WeightedMnSD function (MATLAB)

description: This is the MATLAB function used to calculate the mean and SD deltaS weighted by boundary lengths.  It can be used for any application in which you need to calculated weighted means and standard deviations.
DOI: 10.5061/dryad.g66247g/2
title: Example Boundary Strength Analysis of Guppies

description: This is a series of data, MATLAB data files and MATLAB scripts used to make the guppy figures.
DOI: 10.5061/dryad.g66247g/3
title: Example of Boundary Strength Analysis of Gouldian Finches

description: This is a set of data, MATLAB data, and MATLAB scripts used to make the Gouldian Finch figures.
DOI: 10.5061/dryad.h5h7v20/1
title: Metadata

description: Metadata describing .csv files used in this analysis
DOI: 10.5061/dryad.h5h7v20/2
title: Stand-level Data

description: Data used in stand-level resource selection function
DOI: 10.5061/dryad.h5h7v20/3
title: Tree-level Data

description: Data used in tree-level resource selection function
DOI: 10.5061/dryad.h5h7v20/4
title: Snag-level Data

description: Data used in snag-level resource selection function
DOI: 10.5061/dryad.jc181bs/1
title: R Code

description: All R Code for analyses
DOI: 10.5061/dryad.m8s3r88/1
title: supplementary_file
DOI: 10.5061/dryad.mm1ft40/1
title: DNA alignment matrices

description: We provide in these files the alignment matrices of all DNA loci that we used in our study and the settings used in the Bayesian phylogenetic analyses, for our three DNA datasets (the "Lamiales", "Lamiaceae", and "Oxera" datasets). We provide two files for each dataset, the first contains only the DNA characters used for building our phylogenies, the  second contains all DNA characters
DOI: 10.5061/dryad.mm1ft40/2
title: Phylogenetic trees

description: We provide in these files the phylogenetic trees built in our study for our three DNA datasets (the "Lamiales", "Lamiaceae", and "Oxera" datasets). We provide two files for each dataset, the first contains the majority rule tree inferred from MCMC Bayesian analyses under MrBayes, the  second contains the maximum credibility clade dated tree inferred from analyses under BEAST
DOI: 10.5061/dryad.mm1ft40/3
title: Geographical datasets

description: We provide in these files the geographical datasets that we used in our study. They contains (1) the geographical area of each Oxera species, (2) range asymmetries between each Oxera species pair, (3) range overlaps between each Oxera species pair
DOI: 10.5061/dryad.mm1ft40/4
title: Appendices

description: Appendices 1 through 19 are included in this file.
DOI: 10.5061/dryad.n536ts2/1
title: Nitrate retention and denitrification data at the groundwater-surface water interface in streams within the Wisconsin central sand plains

description: The file includes data from 5 sites on 4 streams in Central Wisconsin, USA.  The data are organized by piezometer location and include solute concentrations of groundwater at 3 sediment depths (5, 25, 60 cm) at upwelling locations.  Nitrate retention and N2 production rates are also included for the piezometer locations.
DOI: 10.5061/dryad.nc88cg6/1
title: Museum specimen corticosterone data

description: File contains corticosterone levels extracted from the hair of museum specimens of deer mouse (Peromyscus maniculatus), that had been collected over an approximately 75-year period.
DOI: 10.5061/dryad.nc88cg6/2
title: Corticosterone data following simulated curation

description: File contains data from an experiment in which skin sections from white-footed mouse (Peromyscus leucopus) were subjected to different museum curation techniques, to determine the effects of curation on hair corticosterone levels.
DOI: 10.5061/dryad.r4b69rg/2
title: EEG and EMG trials, features for classification, and estimated PSDs
DOI: 10.5061/dryad.sp12j6q/16
title: Vaziri_etal_2018_fanova_and_figures_TEMPERATURE

description: R script that produces the colored band plots and resampling curves that appear in the paper. Please see Vaziri_etal_2018_README_data_for_TEMPERATURE.txt
DOI: 10.5061/dryad.st860bt/1
title: Lively & Schlichter_6h_24h NanoString count data

description: Normalized mRNA counts
DOI: 10.5061/dryad.tj30d/6
title: otu97 table pre-filtration blank_included

description: A: OTU table showing the 3334 OTUs identified in the MiSeq analysis of 107 samples analyzed by clustering 97% identical sequences in mothur before filtering. B: The same table rarefied at 8900 reads. C: OTU table showing the 65 OTUs identified in the three ‘blank’/water samples included in our MiSeq sequencing. To identify common OTUs between ‘blank’ and ant samples we used local blast analyses. For the OTUs that were present in both ant and ‘blank’ samples, we also show, at the bottom, the corresponding OTU numbers (IDs) in the ant sample table.
DOI: 10.5061/dryad.tj30d/7
title: OTU97 table main ms filteredOTU97

description: A: OTU table showing the 2099 OTUs identified in the MiSeq analysis of 107 samples analyzed by clustering 97% identical sequences in Mothur. The table was rarefied at 8900 reads. To remove any potential water contaminants, we identified the OTUs (97% clustering) present in the blank ‘water’ samples that were sequenced along with the real samples, and removed these OTUs as contaminants if their relative abundances produced an average blank/sample ratio ≥ 0.2. B: The same OTU table presenting only the 21 abundant OTUs (Fig. S2).
DOI: 10.5061/dryad.tj30d/8
title: OTU97_table_alternative_filtering0.2.unique

description: A rarefied OTU table (similar to the main OTU table used) using the same dataset but curated with an alternative filtering approach. Once again, to remove any potential water contaminants, we used the blank ‘water’ samples, but instead of creating ‘blank’ OTUs based on the 97% similarity we used the unique sequences. Similarly to the previous filtering approach, we then removed identical sequences that were common in the blank samples and the ant samples if their relative abundances produced an average blank/sample ratio ≥ 0.2.
DOI: 10.5061/dryad.vp2614j/2
title: Maximum Likelihood Tree - all Gaps

description: ML tree based on alignment trimmed with Gblocks using the "all gaps" option
DOI: 10.5061/dryad.vp2614j/3
title: Maximum Likelihood Tree - Half Gaps

description: ML tree based on alignment trimmed with Gblocks using the "half gaps" option
DOI: 10.5061/dryad.vp2614j/4
title: Maximum Likelihood Tree - No Gaps

description: ML tree based on alignment trimmed with Gblocks using the "no gaps" option
DOI: 10.5061/dryad.vp2614j/5
title: All Gaps Alignment

description: Plastome alignment trimmed using Gblocks with the "all gaps" option
DOI: 10.5061/dryad.vp2614j/6
title: Half Gaps Alignment

description: Plastome alignment trimmed using Gblocks with the "half gaps" option
DOI: 10.5061/dryad.vp2614j/7
title: No Gaps Alignment

description: Plastome alignment trimmed using Gblocks with the "no gaps" option
DOI: 10.5061/dryad.vp2614j/8
title: No Gblocks Alignment

description: Plastome alignment from Mafft with no Gblocks trimming
DOI: 10.5061/dryad.vp2614j/9
title: Georeferenced Localities of Micrairoideae

description: All localities used to extract BioClim variables (see Materials and Methods section of manuscript) for multivariate analyses.
DOI: 10.5061/dryad.vr021gq/1
title: Autenrieth-MER-Pp_genome_annotation

description: one annotation file for the harbour porpoise (phocoena phocoena) genome generated by the MAKER2 annotation. Format: gff    Annotation statistics are given in the README
DOI: 10.17632/4b82p5zcjh.1
title: Data for: Calcareous plankton and the Mid-Brunhes climate variability in the Alboran Sea (ODP Site 977)
DOI: 10.17632/8hxc7hr7m4.1
title: Data for: Targeted species assemblages exhibit uniform behavioral responses to protection
DOI: 10.17632/d46wftfxsb.1
title: Data for: Depth-dependent seismicity and crustal heterogeneity in South Korea

description: Inversion (RMS) result with fixed focal depths (0.5-30 km) for 7 models
DOI: 10.17632/zjxng9g9sy.1
title: Data for: Pattern of myogenesis and vascular repair in early and advanced lesions of juvenile dermatomyositis.

description: Immunohistochemical analysis and double-immunofluorescence for the characterization of myogenesis and vascular damage and repair in juvenile dermatomyositis
DOI: 10.5061/dryad.0145sn6/1
title: Roff_Ecological_Monographs_Dryad

description: Data from:  Seascapes as drivers of herbivore assemblages in coral reef ecosystems
DOI: 10.5061/dryad.24g415k/1
title: Leonard et al._OIKOS_2018

description: Sheet 1 (Absolute conditioning): Absolute PER conditioning protocol using 6 conditioning trials. Conditioned stimulus (predictor variable) included 8 volatiles (linalool, dipentene, myrcene, geranium, linalool and petrol pollution, dipentene and petrol pollution, myrcene and petrol pollution, geranium and petrol pollution). Response variable = proboscis extension (binary response following exposure to conditioned stimuli: 0 no proboscis extension, 1 proboscis extension).                                               
Sheet 2 (Recall tests): Proboscis extension following exposure to 1 of 8 conditioned stimuli (linalool, dipentene, myrcene, geranium, linalool and petrol pollution, dipentene and petrol pollution, myrcene and petrol pollution, geranium and petrol pollution), 1 hr, 24 hrs and 48 hrs post conditioning. Response to conditioned stimuli and conditioned stimuli with or without the addition of petrol exhaust pollution was recorded.
DOI: 10.5061/dryad.2mg3t27.1
title: Data from: Age and sex differences in burnout, career satisfaction, and well-being in US neurologists
DOI: 10.5061/dryad.2mg3t27.1/1.1
title: e-Supplement 1: Survey Instrument with MBI redacted

description: e-Supplement 1: Survey Instrument with MBI redacted
DOI: 10.5061/dryad.2mg3t27.1/3.1
title: e-Supplement 3: Representative Quotes from Respondents

description: e-Supplement 3: Representative Quotes from Respondents
DOI: 10.5061/dryad.2mg3t27.1/4.1
title: Figure e-1

description: Figure e-1. Age distribution of male and female neurologists
DOI: 10.5061/dryad.2mg3t27.1/5.1
title: Figure e-2

description: Figure e-2. Depersonalization, emotional exhaustion, and personal accomplishment by weekend responsibilities and gender
DOI: 10.5061/dryad.2mg3t27.1/6.1
title: e-Supplement 2: e-Tables and Figure e-1 and e-2 Legends

description: e-Supplement 2: e-Tables and Figure e-1 and e-2 Legends
DOI: 10.5061/dryad.2mg3t27.2/4.2
title: Figure e-1

description: Figure e-1. Age distribution of male and female neurologists
DOI: 10.5061/dryad.2mg3t27.2/5.2
title: Figure e-2

description: Figure e-2. Depersonalization, emotional exhaustion, and personal accomplishment by weekend responsibilities and sex
DOI: 10.5061/dryad.3214916/2
title: SAS Analysis Migration

description: SAS analysis that forms the basis of results presented in Table 1.
DOI: 10.5061/dryad.3214916/3
title: SAS Analysis, cAMP migration

description: SAS analysis that forms the basis of results presented in Table S2.
DOI: 10.5061/dryad.3214916/4
title: cAMP_migration.txt

description: Data from cAMP migration assays, comparing response of different D. discoideum strains to strains of E. coli that are wild-type (WT), cAMP non-producers (N), or cAMP overproducers (OE).
DOI: 10.5061/dryad.3214916/5
title: migration_figures.R

description: R script that produces each results figure from the raw data files.
DOI: 10.5061/dryad.3h70d78/1
title: SimulationScripts

description: Scripts needed for simulation are included in this Zip folder.
DOI: 10.5061/dryad.41752p5/1
title: Germain BL data

description: First worksheet includes the demographic data, second worksheet the trait data. Species codes are expanded in the supplementary materials.
DOI: 10.5061/dryad.417ft/1
title: LLIN use and malaria parasitemia in Abuja analysis

description: The data was collected in the field from household members of laboratory-confirmed malaria patients
DOI: 10.5061/dryad.4573j74/2
title: Baumann etal - Variability and lnRR responses - source data
DOI: 10.5061/dryad.4t5q437/1
title: All experimental data from the mats

description: Biomass, cover and rhizome growth on the mats with different treatments.
DOI: 10.5061/dryad.56g7v08/1
title: figure_data

description: Each subfolder has a name of a figure. In every such subfolder, Matlab code for the figure is provided, and named "...maker.m", alongside its data folder. The data is obtained using MATCONT6p10 (free Matlab software project for the numerical continuation and bifurcation study).
DOI: 10.5061/dryad.5g5n8n2/1
title: Timeshiftdata

description: Dataset includes lists of individual hosts and bacterial isolates, year of pathogen sampling, host infection status and severity, and estimates of host and pathogen fitness
DOI: 10.5061/dryad.5h01m0c/2
title: mtORF FASTA alignment data

description: Mitochondrial Open Reading Frame alignment data for all samples
DOI: 10.5061/dryad.6fd34vr/1
title: Data for ARTs and lifetime reproductive success in male CGS

description: Male Columbian ground squirrels (Urocitellus columbianus) data collected in the field located in Kananaskis Country, Alberta, Canada. Two separate data sets were used for the different analyses. Data for the direct comparison between satellite and territorial males is in the tab labeled "Direct_Comparison". The data for the lifetime reproductive success analysis is in the tab labeled "Lifetime_Reproductive_Success".
DOI: 10.5061/dryad.6tv82c4/1
title: Capture-mark-resighting history of roseate terns ringed as fledglings

description: Capture-mark-resighting history of individual roseate terns ringed as fledglings in the colonies Rockabill (R), Lady's Island Lake (L) and Coquet Island (C) from 1992 to 2016. A '0' denotes that the individual was not observed that year.
DOI: 10.5061/dryad.6tv82c4/2
title: Population count and productivity data for roseate terns in NW Europe

description: The data file includes data on breeding pairs and number of fledglings of roseate terns on Rockabill, Lady's Island Lake and Coquet Island, in NW Europe.
DOI: 10.5061/dryad.7727rc0/1
title: Thousand Island lake 2009-2010 plot datasets
DOI: 10.5061/dryad.821c3j3.1
title: Data from: New remains of the aquatic turtle Hydromedusa casamayorensis (Pleurodira, Chelidae) from the middle Eocene of Patagonia: taxonomic validation and phylogenetic relationships
DOI: 10.5061/dryad.821c3j3.2
title: Data from: New remains of the aquatic turtle Hydromedusa casamayorensis (Pleurodira, Chelidae) from the middle Eocene of Patagonia: taxonomic validation and phylogenetic relationships
DOI: 10.5061/dryad.821c3j3.2/1.2
title: Appendix S2
DOI: 10.5061/dryad.821c3j3.2/2.2
title: Appendix S1
DOI: 10.5061/dryad.821c3j3.2/3.2
title: Appendix S3 (2)
DOI: 10.5061/dryad.821c3j3.2/4.2
title: Appendix S4
DOI: 10.5061/dryad.821c3j3.2/5.2
title: Appendix S5
DOI: 10.5061/dryad.821c3j3.2/6.2
title: Appendix S6
DOI: 10.5061/dryad.8703q25/1
title: Data of Soil Organic Carbon in Henan Province
DOI: 10.5061/dryad.8b62gn1/1
title: Online Supplement

description: Online Supplementary data for the following article:

Georgakis MK, Duering M, Wardlaw JM, Dichgans M. WMH and long-term outcomes in ischemic stroke: a systematic review and meta-analysis.

CONTENTS:
e-Methods.
Table e-1. Excluded articles and reasons for exclusion.
Table e-2. Articles excluded due to overlapping populations with other eligible studies.
Table e-3. Characteristics of eligible articles by examined outcomes.
Table e-4. Quality score of eligible articles by examined outcomes, as assessed by the Newcastle Ottawa scale.
Table e-5. Sensitivity analyses restricted to studies fulfilling each of the Newcastle-Ottawa scale quality prerequisites per scale item. 
Table e-6. Meta-regression analyses for the effect of different study characteristics on the association of white matter hyperintensities at baseline (moderate/severe vs. mild/none) with stroke outcomes.  
Table e-7. Assessment of publication bias with the Egger’s test in the analysis of the associations of white matter hyperintensities (WMH) with stroke outcomes. 
Figure e-1. Forest plots depicting the associations of white matter hyperintensities (WMH) with (A) dementia and (B) cognitive impairment.
Figure e-2. Forest plots depicting the associations of white matter hyperintensities (WMH) with (A) any functional impairment, (B) functional impairment defined as mRS &gt;1, and (C) functional impairment defined as mRS &gt;2.
Figure e-3. Forest plots depicting the associations of white matter hyperintensities (WMH) with (A) any recurrent stroke, and (B) recurrent ischemic stroke.
Figure e-4. Forest plots depicting the associations of white matter hyperintensities (WMH) with (A) all-cause mortality, and (B) cardiovascular mortality.
Figure e-5. Forest plots depicting the associations of white matter hyperintensities (WMH) volume with any functional impairment.
Figure e-6. Forest plots depicting the summary association estimates between white matter hyperintensities (WMH) and study outcomes, when excluding studies based on secondary analyses of randomized controlled trials.
Figure e-7. Forest plots depicting the summary association estimates between white matter hyperintensities (WMH) and study outcomes derived from sensitivity analyses restricted to studies that have analyzed their data with Cox regression models and have provided Hazard Ratios as estimates of association.
Figure e-8. Dose-response meta-analysis of the association of white matter hyperintensities burden at baseline with stroke outcomes in studies adjusting for age, stroke severity and cardiovascular risk factors. The graphs depict the restricted cubic spline derived effect estimates and their 95% confidence intervals for (A) dementia, (B) any functional impairment, (C) any recurrent stroke, and (D) all-cause mortality.
Figure e-9. Funnel plots for the associations of white matter hyperintensities (WMH) with (A) dementia, (B) any functional impairment, (D) any recurrent stroke, and (D) all-cause mortality.
e-References.
DOI: 10.5061/dryad.8gb685k/1
title: 2004_InfiltrationExperiment

description: Contains the observation data related to the 2004 Infiltration experiment at the C24 depression at the Spy Hill site, Alberta, Canada.
DOI: 10.5061/dryad.8gb685k/2
title: 2006_2011_data

description: Contains observation data (pond depth, runoff, piezometer level and meteorological data) for the C24 depression from Nov 2006 - Dec 2011.
DOI: 10.5061/dryad.8gb685k/3
title: GIS_Data

description: .zip file containing GIS files for the C24 depression, West Nose Creek catchment and digital elevation model of the area.
DOI: 10.5061/dryad.9b5q2pv/1
title: McCandlishHeredityCode

description: Wolfram Mathematica 10.2.0.0 notebook
DOI: 10.5061/dryad.bf43443/4
title: Boag_data_OSIvsoceanographic_FigsS1-8

description: Oceanographic data used for comparisons between various variables and OSI outputs.
DOI: 10.5061/dryad.bf43443/6
title: Boag_data_temperatureatsurfacevs1000m_Fig 4b

description: Oceanographic temperature and other data data associated with surface and 1000 m water-depth from the global ocean.
DOI: 10.5061/dryad.bf43443/7
title: code_OxygenSupplyIndex

description: R script used to calculate OSI and temperature data.
DOI: 10.5061/dryad.cp91mj7/10
title: amplicons.slim.RPI400.Width

description: Maximum likelihood estimates for genetic effects on floral tube width (amplicon SNPs).
DOI: 10.5061/dryad.cp91mj7/11
title: initial.data.near.focalsites

description: Variant call file listing genotypes for the all SNPs in the initial scan in the vicinity of SNPs targeted for amplicon sequencing (including sites that did not meet our strict filtering requirements in the initial scan).
DOI: 10.5061/dryad.cp91mj7/12
title: initial.data.near.focalsites.MLE.StamenL

description: Maximum likelihood estimates for genetic effects on stamen filament length (initial scan, SNPs near targeted sites).
DOI: 10.5061/dryad.cp91mj7/13
title: initial.data.near.focalsites.MLE.TubeL

description: Maximum likelihood estimates for genetic effects on floral tube length (initial scan, SNPs near targeted sites).
DOI: 10.5061/dryad.cp91mj7/8
title: amplicons.slim.RPI400.MLE.StamenL

description: Maximum likelihood estimates for genetic effects on stamen filament length (amplicon SNPs).
DOI: 10.5061/dryad.cp91mj7/9
title: amplicons.slim.RPI400.MLE.TubeL

description: Maximum likelihood estimates for genetic effects on floral tube length (amplicon SNPs).
DOI: 10.5061/dryad.fp3qb51/1
title: Data BartussekLehmann RSI 2018

description: ASCII data of traces in figures.
DOI: 10.5061/dryad.fr88s7f/1
title: Raw GGP HD150K SNP data for 9 Russian cattle breeds

description: This set includes 9 Russian cattle breeds genotyped on the GeneSeek HD150K SNP array. The breeds included are: Kalmyk, Buryat, Yakut, Kazakh Whiteheaded, Kostroma, Kholmogory, Bestuzhev, Yaroslavl, and Black Pied.
DOI: 10.5061/dryad.g05350g/1
title: GIXRD data

description: All GIXRD data used in the paper, i.e. GIXRD for KNN with and without salt flux on 100 STO, 110 STO and 111 STO. In addition to this there is GIXRD data on KNN-E-100 thin film heat treated at 700, 800 and 900 degrees celsius (as referred to in the paper).
DOI: 10.5061/dryad.g05350g/2
title: Theta-2theta XRD data

description: All theta-2theta data used in the paper, i.e. for KNN thin films with and without salt flux on 100 STO, 110 STO and 111 STO.
DOI: 10.5061/dryad.g05350g/3
title: Piezoresponse data

description: All piezoresponse data used in the paper. This includes PR amplitude, PR phase, dielectric permittivity and loss tangent measurements.
DOI: 10.5061/dryad.g05350g/4
title: TGA data

description: Data for the TGA measurement referred to in the paper (alkali loss observed at elevated temperatures.
DOI: 10.5061/dryad.jc181bs/2
title: Song Data

description: Data collected on quantitative song characteristics and note type and ordering.
DOI: 10.5061/dryad.jc181bs/3
title: songData_filled

description: Song data input file for analysis in R
DOI: 10.5061/dryad.jc181bs/4
title: Worldclim Data

description: GPS data points and data extracted from Worldclim v1.4
DOI: 10.5061/dryad.jc181bs/5
title: ND2 alignment

description: ND2 Gene - DNA sequence alignment
DOI: 10.5061/dryad.jc181bs/6
title: CytB alignment

description: ND2 Gene - DNA sequence alignment
DOI: 10.5061/dryad.js7q8b3/1
title: README

description: This file explains how to use the provided R scripts and data to produce the figures that accompany: Lang SDJ, Mann RP & Farine DR 2018. Temporal activity patterns of predators and prey across broad geographic scales .
DOI: 10.5061/dryad.js7q8b3/2
title: eBird scripts 0-6

description: Zip file containing the full pipeline of R script files for analysing the provided eBird data (see Readme for details)