cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/kdvxtc9xcg.2
title: Spike-wave seizures and "proepileptic" activity in WAG/Rij rat model of absence epilepsy as recorded in the cortex, hippocampus and thalamus

description: Version 2 Video-EEG file G8_ed2.avi v.1 is updated: the nomenclature of EEG channels is corrected. Records were taken in 8 months old male WAG/Rij rat during behavioral sleep. Bipolar recordings: Channel 1 (red)- the hippocampus, CA1 (locally); Channel 2 (green) - the ventrobasal thalamus, Po (locally). Monopolar recordings with the reference in the cerebellum: Channel 3 (blue) - the frontal cortex; Channel 4 (green) - the hippocampus, CA1; Channel 5 (red) - the ventrobasal thalamus, Po. Absence seizures (spike-wave discharges) are marked as "SWD" and episodes of "proepileptic" activity are marked as "ProEpi". "Proepileptic" activity appears in the form of rudimentary SWD prior to epileptic SWD or in the form of high voltage spindles during behavioral sleep. SWD are best seen in the monopolar recording in the frontal cortex (blue Channel 3), SWD are also present in the bipolar recordings in the hippocampus (green Channel 4) and the thalamus (red Channel 5), SWD are not seen in the monopolar recording in the hippocampus (red Channel 1).
DOI: 10.7487/2019.2.1.1160
title: Holly London

description: cal fin and cal hel monthly means 1958 to 2016 for std areas B2, D3 and D4
DOI: 10.25585/1488212
title: The impacts of nitrogen availability and seasonal dynamics on plant-microbial interactions affecting C and N cycling in coniferous forest soils
DOI: 10.25585/1488228
title: Poplar resequencing Part 2 BESC
DOI: 10.7910/dvn/hn7ncb/bjhosb
title: figure7.log
DOI: 10.3886/e107944v1
title: Texas School District Budgets and Demographics, 1999-2015

description: The effect of the 2008 Recession has reverberated throughout public education in the United States. This paper examines how the gifted education funding in the state of Texas changed following the Great Recession. The framework of a generalized longitudinal mixed effect model was used to explore this topic. Data acquired from the Texas Education Association included financial and demographic information on Texas School districts (n = 1,025) between the 1999–2000 and 2014–2015 academic school years. The primary finding was that the Great Recession adversely affected suburban school districts. These districts saw a greater percentage point reduction of budget allocated toward gifted programming (–.24) than rural (–.08), town (–.05), or urban (–.08) school districts (t = 2.72, p &lt; .01).
description: Response Rates: All public school districts in Texas between 1999 and 2015.
description: other~~
description: Public School districts in TexasSmallest Geographic Unit: NCES locale Code
description: N/A
DOI: 10.7910/dvn/uyshst/2gdkvn
title: all-offices.tab

description: List of all offices available in the state-specific files
DOI: 10.18112/openneuro.ds001612.v1.0.2
title: Offline replay supports planning in human reinforcement learning
DOI: 10.7910/dvn/ft0y0s/3z4sla
title: RatNonCands_No_Indices_For_Archiving.dta
DOI: 10.7910/dvn/gm5syq/fu9yft
title: output7.zip
DOI: 10.7910/dvn/koo6mp/nqhllw
title: c4g_matches.tab

description: Dataset used in the analysis
DOI: 10.7910/dvn/uyshst/kymuoi
title: codebook.txt

description: :unav
DOI: 10.7910/dvn/v6oxqw/cjrqip
title: NAT.dbf
DOI: 10.7910/dvn/1bcrxo/erj2y0
title: Measures of Health.tab
DOI: 10.7910/dvn/ft0y0s/epmssu
title: Suffolk Law Pol Amb Survey as of 7.20.12.pdf
DOI: 10.7910/dvn/v6oxqw/29eqzk
title: harbersingram_psrm2_20181206_main.R
DOI: 10.7910/dvn/v6oxqw/ffzwiv
title: tl_2014_us_state_contig.zip
DOI: 10.17909/t9-cfke-ps60
title: Investigating Jupiter’s Turbulent Power Spectrum ("JTPS")

description: JTPS (HST proposal ID AR-14585) is an investigatation of the spectral power in Jupiter’s cloud features and zonal winds. To complete this project, analyses were done on full global Jupiter maps acquired in many epochs. Several of these are tied to projects with their own HLSP pages (see table below). However, some maps have not been previously archived and are provided here. Although initial analyses were performed only on red and near-IR images, all available maps have been posted.

The maps are generated by stitching together images from consecutive HST orbits to cover all longitudes of the planet as it rotated. Full global maps require 5-6 HST orbits to span Jupiter’s full 10-hour rotation. To make a complete map, individual images are navigated with iterative ellipsoid limb fitting and mapped at 0.1 deg/pixel over +/- 79.8 deg of latitude and centered on the central meridian longitude. Minnaert functions are applied to reduce limb effects, using empirical fits to the k coefficient, ranging from ~0.5 to 0.999 at UV to near IR bands, respectively, but maps before 2014 do not contain absolutely calibrated reflectance. To generate a global map, individual maps are joined at overlapping longitudes, and seams are smoothed with a weighted average at the map edges, typically over ~20 pixels. The seams are most easily observed at high latitudes in filters that are sensitive to high altitude hazes above the cloud deck (UV and methane gas absorption band filters). Note that maps from data before 2009 use WFPC2, which suffered significant vignetting in the methane quad filters (FQCH4P15 and FQCH4N15).
DOI: 10.5061/dryad.68pk1rv/2
title: Ttri_cds.tar.gz

description: The CDS sequence file of horseshoe crab.
DOI: 10.5281/zenodo.2530145
title: Novel gene regulatory networks identified in response to nitro-conjugated linoleic acid in human endothelial cells

description: A distinct transcriptome regulated by NO<sub>2-</sub>CLA was revealed in primary human coronary artery endothelial cells (HCAECs) through RNA sequencing.
DOI: 10.7910/dvn/ft0y0s/sr8gwq
title: Final Wave HLS Survey Instrument 5-6-14.pdf
DOI: 10.6073/pasta/819933a1fff163a7442c5ff4564b1385
title: PBG04 Reproductive effort of Big Bluestem, Indiangrass and Little Bluestem in the Patch-Burn Grazing Experiment at Konza Prairie

description: 'PBG' datasets are associated with a long-term, large-scale study that is addressing the effects of fire-grazing interactions in the context of a Patch-Burn Grazing management system designed to promote grassland heterogeneity. Effects of patch-burn grazing management on plant and animal diversity and the nature and variety of wildlife habitat are being assessed in two replicate management units, each consisting of three pastures (watersheds) designated C03A/C03B/C03C and C3SA/C3SB/C3SC. In each patch-burn grazing unit, one watershed is burned and two that are left unburned in a given year. The burning treatments are rotated annually so that each pasture is burned every third year. Each patch-burn grazing unit is paired with an annually-burned pasture for comparison with traditional grazing systems (C01A and C1SB). All grazing units are stocked with cow/calf pairs from approximately 1 May until 1 Oct at a stocking density equal to 3.2 ha per cow/calf. To examine the impact of patch burning and grazing in all 8 units, we monitor changes in plant species composition, residual biomass, grassland bird populations, insect populations, small mammal populations, soil nutrients, and stream water quality1 (1C3SA/C3SB/C3SC unit only). The KSU Department of Animal Science monitors cattle performance, including weight gain and body condition to assess the economic feasibility of using patch-burn management on a widespread basis. PBG041 includes data on flowering stem height (m) of three dominant prairie grasses: Andropogon gerardii (ANGE), Sorghastrum nutans (SONU), and Schizachyrium scoparium (ANSC). PBG042 includes flowering stem density (no. per sq. m) and mass (grams per sq. m) for the same grass species.
DOI: 10.7910/dvn/1bcrxo/oiqxlj
title: Part4 Results(Robustness check).smcl
DOI: 10.7910/dvn/bswgdu/tnhxin
title: Summary Statistics Code.do
DOI: 10.7910/dvn/dqlikm/vqqnrd
title: 2012JSJ_StrategicAnticipation_ReplicationModels.do

description: Stata code to replicate Table 3 on page 286
DOI: 10.7910/dvn/gm5syq/igywsj
title: output8.zip
DOI: 10.7910/dvn/koo6mp/nwfjwn
title: readme.txt

description: Instructions about replicating the analysis.
DOI: 10.7910/dvn/uyshst/cixcen
title: notes.txt

description: :unav
DOI: 10.7910/dvn/uyshst/hirfnk
title: national-files.zip

description: Nation-wide governor, Senate, and House results in long and wide formats
DOI: 10.21227/fscm-js96
title: Analog-to-Information Converters in the wideband RF measurements

description: Design of novel RF front-end hardware architectures and their associated measurement algorithms.Research objectives, includes:RO1: Novel architecture based upon Adaptive Wavelet Band-pass Sampling (AWBS) of RF Analog-to-Information Conversion (AIC).RO2: Integration of AWBS for increasing the wideband sensing capabilities of real-time spectrum analyzers by using AICs.RO3: Propose online calibration methods and algorithms for front-end hardware non-idealities compensation.RO4: Design a hardware prototype aimed to perform real-time spectrum sensing with 1 GHz real-time bandwidth.
DOI: 10.25585/1488213
title: Systems analysis of grass stem development for biofuel production
DOI: 10.25585/1488221
title: From phenotype to genotype and back again: large scale functional characterization of microbial dark matter by combining activity-based cell sorting, isotope labeling, and genomic sequencing
DOI: 10.3886/e107946v1
title: Compensate a little, but punish a lot: Asymmetric routes to restoring justice

description: Data from paper forthcoming in PLoS One titled: Compensate a little, but punish a lot: Asymmetric routes to restoring justice
DOI: 10.3886/e107946v2
title: Compensate a little, but punish a lot: Asymmetric routes to restoring justice

description: Data from paper forthcoming in PLoS One titled: Compensate a little, but punish a lot: Asymmetric routes to restoring justice
DOI: 10.5281/zenodo.2530272
title: MADFORWATER: WP2: Adaptation of technologies for efficient water management and treated wastewater reuse in agriculture: Task 2.3–Agro-industrial wastewater treatment: Subtask 2.3.1. –Treatment of olive mill wastewater (OMWW): Aerobic biological treatment in sequenced batch reactors (SBRs): Subset 1

description: This dataset contains the data underlying the following publication: Fatma AROUS, Chadlia HAMDI, Souhir KMIHA, Nadia KHAMMASSI, Amani AYARI, Mohamed NEIFAR, Tahar MECHICHI, Atef  JAOUANI (2018). Treatment of olive mill wastewater through employing sequencing batch reactor: Performance and microbial diversity assessment. 3 Biotech 2018, 8, 481. https://doi.org/10.1007/s13205-018-1486-6.
DOI: 10.5281/zenodo.2530273
title: MADFORWATER: WP2: Adaptation of technologies for efficient water management and treated wastewater reuse in agriculture: Task 2.3–Agro-industrial wastewater treatment: Subtask 2.3.1. –Treatment of olive mill wastewater (OMWW): Aerobic biological treatment in sequenced batch reactors (SBRs): Subset 1

description: This dataset contains the data underlying the following publication: Fatma AROUS, Chadlia HAMDI, Souhir KMIHA, Nadia KHAMMASSI, Amani AYARI, Mohamed NEIFAR, Tahar MECHICHI, Atef  JAOUANI (2018). Treatment of olive mill wastewater through employing sequencing batch reactor: Performance and microbial diversity assessment. 3 Biotech 2018, 8, 481. https://doi.org/10.1007/s13205-018-1486-6.
DOI: 10.6073/pasta/f033452f755949c5f267a4e0c156016e
title: PBG08 Grasshopper density survey in the Patch-Burn Grazing experiment at Konza Prairie

description: PBG datasets are associated with a long-term, large-scale study that is addressing the effects of fire-grazing interactions in the context of a Patch-Burn Grazing management system designed to promote grassland heterogeneity. Effects of patch-burn grazing management on plant and animal diversity and the nature and variety of wildlife habitat are being assessed in two replicate management units, each consisting of three pastures (watersheds) designated C03A/C03B/C03C and C3SA/C3SB/C3SC. In each patch-burn grazing unit, one watershed is burned and two that are left unburned in a given year. The burning treatments are rotated annually so that each pasture is burned every third year. Each patch-burn grazing unit is paired with an annually-burned pasture for comparison with traditional grazing systems (C01A and C1SB). All grazing units are stocked with cow/calf pairs from approximately 1 May until 1 Oct at a stocking density equal to 3.2 ha per cow/calf. To examine the impact of patch burning and grazing in all 8 units, we monitor changes in plant species composition, residual biomass, grassland bird populations, insect populations, small mammal populations, soil nutrients, and stream water quality1 (1C3SA/C3SB/C3SC unit only). The KSU Department of Animal Science monitors cattle performance, including weight gain and body condition to assess the economic feasibility of using patch-burn management on a widespread basis. This data set focuses on measuring grasshopper density using ring count method (Onsager 1977*) at watersheds C03A, C03B, C03C, C01A, C3SA, C3SB, C3SC, and C01B. Grazing intensity is estimated (Joern 2005) at each site at time of density measurements to model how grasshopper populations respond to grazing.
DOI: 10.7910/dvn/ft0y0s/ixojer
title: RatNonCands_No_Indices_For_Archiving_STATA.tab
DOI: 10.7910/dvn/ft0y0s/xy8d6f
title: CODEBOOK 1.29.16 FOR IQSS.xlsx
DOI: 10.7910/dvn/uyshst/e2chug
title: state-files.zip

description: State-specific results with federal, statewide, legislative, and local races in long format
DOI: 10.25548/16-26ey
title: Edar is a downstream target of beta-catenin and drives collagen accumulation in the mouse prostate

description: This collection includes antibody and ISH probe validation data for reagents used in the paper: Edar is a downstream target of beta-catenin and drives collagen accumulation in the mouse prostate.
DOI: 10.5281/zenodo.2530276
title: The ReDraw Dataset: A Set of Android Screenshots, GUI Metadata, and Labeled Images of GUI Components

description: This is the dataset used to train and evaluate the CNN and KNN machine learning techniques for the ReDraw paper, published in IEEE Transactions on Software Engineering in 2018.

Link to ReDraw Paper: https://arxiv.org/abs/1802.02312
description: Supported by NSF Grant CCF-1815186
DOI: 10.5281/zenodo.2530277
title: The ReDraw Dataset: A Set of Android Screenshots, GUI Metadata, and Labeled Images of GUI Components

description: This is the dataset used to train and evaluate the CNN and KNN machine learning techniques for the ReDraw paper, published in IEEE Transactions on Software Engineering in 2018.

Link to ReDraw Paper: https://arxiv.org/abs/1802.02312
description: Supported by NSF Grant CCF-1815186
DOI: 10.6073/pasta/01f96884744dc6e68f4d24dab24c0ec0
title: Mangrove soil phosphorus addition experiment from June 2013 to August 2013 at the mangrove peat soil mesocosms (FCE), Key Largo, Florida - Nutrients in Porewater, Soil and Roots

description: Sea levels in South Florida are conservatively predicted to rise by 0.60 m by 2060. The key mechanisms that maintain coastal peatland elevation against increasing sea level are organic matter accumulation via plant production and mineral sedimentation rates (Smoak et al. 2013). Although coastal mangrove soils are regularly inundated with seawater, little is know about the drivers of carbon sequestration (above or below ground) versus atmospheric efflux under different conditions of salinity and elevated phosphorus (P) associated with sea-level rise and storm surge.  A recent study using mangrove peat soils found that seawater inundation reduced soil carbon efflux losses and salinity concentration had little effect on carbon retention or loss pathways. The next logical steps are to understand how plant-soil interactions affect above and below ground carbon processes, as well as how increases in P associated with storm surge from the Gulf of Mexico will influence physical, chemical and biological components of mangrove soils that are associated with above and belowground carbon processes.  We will manipulate P in inundated peat soil mesocosms with disturbed and undisturbed red mangrove (Rhizophora mangle) seedlings to identify some of the fundamental mechanisms of soil elevation and carbon cycling given expected increases in seawater-based P availability in South Florida coastal mangroves.
DOI: 10.7910/dvn/vjcl6d/qlqa4i
title: cces16_DKU_unmatched.tab
DOI: 10.17632/2449xdbjbd.1
title: Data for: Tresch et al. 2019: Litter decomposition driven by soil fauna plant diversity and soil management in urban gardens
DOI: 10.17632/n829fpnc8j.1
title: Data for: Analysis of multiple cosmogenic nuclides constrains Laurentide Ice Sheet history and process on Mt. Mansfield, Vermont’s highest peak

description: Research data associated with "Analysis of multiple cosmogenic nuclides constrains Laurentide Ice Sheet history and process on Mt. Mansfield, Vermont’s highest peak" by Corbett et al.
DOI: 10.17632/yf25kf22gc.1
title: Data for: Multifunctional Piezoelectric Elastomer Composites for Smart Biomedical or Wearable Electronics
DOI: 10.18112/openneuro.ds001636.v1.0.1
title: test
DOI: 10.6073/pasta/0e7669db780d203dda3a234ed15be01f
title: Mangrove soil phosphorus addition experiment from July 2013 to August 2013 at the mangrove peat soil mesocosms (FCE), Key Largo, Florida - Nutrients in Surface Water and Aboveground Biomass

description: Sea levels in South Florida are conservatively predicted to rise by 0.60 m by 2060. The key mechanisms that maintain coastal peatland elevation against increasing sea level are organic matter accumulation via plant production and mineral sedimentation rates (Smoak et al. 2013). Although coastal mangrove soils are regularly inundated with seawater, little is know about the drivers of carbon sequestration (above or below ground) versus atmospheric efflux under different conditions of salinity and elevated phosphorus (P) associated with sea-level rise and storm surge.  A recent study using mangrove peat soils found that seawater inundation reduced soil carbon efflux losses and salinity concentration had little effect on carbon retention or loss pathways. The next logical steps are to understand how plant-soil interactions affect above and below ground carbon processes, as well as how increases in P associated with storm surge from the Gulf of Mexico will influence physical, chemical and biological components of mangrove soils that are associated with above and belowground carbon processes.  We will manipulate P in inundated peat soil mesocosms with disturbed and undisturbed red mangrove (Rhizophora mangle) seedlings to identify some of the fundamental mechanisms of soil elevation and carbon cycling given expected increases in seawater-based P availability in South Florida coastal mangroves.
DOI: 10.5281/zenodo.2530388
title: Multi_Level_Biological_Networks

description: In our work, we collected biological entities and their relations, and put them into these networks.

The below description is in our manuscript.

As soon as the manuscript is published, we will present the access information in this page.

---

The molecule type consisted of genes, and the function type consisted of GO terms. The phenotypic type consisted of diseases that are MeSH terms in disease categories, and the concepts in some UMLS concept types: <em>Congenital Abnormality, Acquired Abnormality, Finding, Pathologic Function, Disease or Syndrome, Mental or Behavioral Dysfunction, Cell or Molecular Dysfunction, Sign or Symptom, Anatomical Abnormality, </em>and<em> Neoplastic Process.</em> Those UMLS concept types contained a considerable number of the MeSH terms in disease categories.

18 types of biological relations were defined with their pre-defined relation types and their original resources. The 18 types are presented in the Supplementary Material (Supplementary Table S2).

From the CODA, 13 types of relations for this study were defined by combining the six original resources and the eleven relation types that were pre-defined in the CODA. The six original resources were BioGRID<sup>41</sup>, RegNetwork, TRANSFAC<sup>42</sup>, EndoNet<sup>43</sup>, KEGG, GO, and PhenoGO<sup>44</sup>, which were released until 2016. The six pre-defined types in CODA were: <em>Undirected Link, Directed Link, Positive Increase, Positive Decrease, Negative Increase, </em>and<em> Negative Decrease</em>. Moreover, their reversal types were also made. The <em>Undirected Link</em> means a non-directional association, and the <em>Positive Decrease</em> means that the activity or the amount of a receiver decreases as the activity or the amount of an actor increases<sup>19</sup>. 

From the UMLS (version 2016AA), four types of relations were defined for the present study. They were defined only by their original resources: MedlinePlus<sup>45</sup>, MTHMST<sup>46</sup>, NCI<sup>47</sup>, and OMIM. Although the UMLS has more than 200 resources, only the four resources provided a considerable number of relations among the nodes that we considered. The pre-defined types of relations in the four resources were too many for us to properly categorize them. Therefore, we ignored them when defining the types of relations for this study.

The MEDLINE (version 2017) provides the co-occurrence frequency of two MeSH terms. It says how many times two MeSH terms have been attached to the same biomedical literature. Only one type of relations was defined for our research. Among functions or phenotypes, if two nodes had any co-occurrence frequency, we determined there is a co-occurrence relation between them. We tried to separate them according to their frequency. However, the performance, AUROC values, in the application was best when the co-occurrence relations were not separated.