cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/y4kmnb3tvx
title: E.denticulatum quant BUP

description: MaxQuant output files (txt folder) from quantitative bottom-up proteomics analysis of two pilot-scale hot-water extracts from E. denticulatum, described in the manuscript "Proteomic characterization of pilot scale hot-water extracts from the industrial carrageenan red seaweed Eucheuma denticulatum"
Extract A is labelled "A-013-05e" and Extract B "A-022-05e". Data is organized as exploratory phase (unspecific analysis with 1%, 5%, and 10% FDR as well as semi-specific analysis with 1% and 5% FDR) and as final phase (for tryptic and semi-specific analysis with optimized search parameters). Raw MS data are available upon request.
Repository also contains the reference protein database (in .fasta format) as well as qRNAseq data.
DOI: 10.17632/3mhck8sdyj
title: O que sabemos sobre os impactos ambientais do turismo nos recifes tropicais do Brasil?

description: The aim of this work was to systematize and analyze the results of the researches that evaluated the impacts of tourism in Brazil’s tropical reefs, identifying the geographic scope of the studies, as well as the biological groups and ecological variables used for environmental assessment, distinguishing those that have changed in function of tourist use. 81 publications were identified, between 1996 and 2020, with an exponential increase in researches over time. Pernambuco and Rio Grande do Norte were the states with the largest number of studies on the subject, concentrating 50% of the studies found. Seven biological groups, including fish, algae and invertebrates, were evaluated in reef areas, considering variables such as richness, abundance and density. Most of the investigated variables were altered as a result of tourist activity on the reefs, except for the group of corals. An integrated understanding of the impacts of tourism can contribute to the development of management strategies in reef areas, seeking solutions that consider social, economic and environmental aspects.
DOI: 10.17632/3skw27c5k2
title: Extreme Copper Isotope Fractionation Driven By Redox Oscillation During Gleysols Weathering in Mun River Basin, Northeast Thailand

description: This dataset includes the location of samples, sand, clay, silt contents, soil organic carbon (SOC) contents, major and trace elements contents (Na, Mg, Al, Ca, Ti, K, Fe, Mn, Cu, Ce), the chemical index of alteration (CIA) values, mafic index of alteration (MIA) values, and Cu isotope fractionation data from two low-humic gleysol profiles (S1 and S2) from the Mun river basin Thailand.
DOI: 10.17632/3w5rnpkcmw
title: Characteristics and Kinetics of Bainite Transformation Behaviour in a High-Silicon Medium-Carbon Steel Above and Below the Ms Temperature

description: this data are about kinetic of bainite formation
DOI: 10.17632/5zbv2mb5zp
title: Data for: Root-zone carbon and nitrogen pools across two chronosequences of coastal marshes formed using different restoration techniques: Dredge sediment versus river sediment diversion
DOI: 10.17632/6msmhr9vrs
title: Inflammasome-mediated glucose limitation induces antibiotic tolerance in Staphylococcus aureus 

description: Interactions with the host immune system alters S. aureus response to therapeutic antibiotics. We find that S. aureus α-toxin, a pore-forming toxin, interacts with macrophages to alter the microenvironment of the pathogen and influence its susceptibility to antibiotics. α-toxin-mediated activation of the NLRP3 inflammasome induces antibiotic tolerance through increased glycolysis in the host cells, resulting in glucose limitation and ATP depletion in S. aureus. Additionally, inhibition of NLRP3 activation improves antibiotic efficacy in vitro and in vivo. Our findings identify interactions between S. aureus and the host that result in metabolic crosstalk that can determine the outcome of antimicrobial therapy. This data contains GraphPad Prism files containing data from the main and supplemental figures of J.E.Beam. et al., 2023.
DOI: 10.17632/7479j4j5jz
title: Challenges in land surface modeling of post-fire runoff and snowpack in Pacific-Northwest 

description: Noah-MP data used in the Abolafia-Rosenzweig et al. (in review): "Challenges in land surface modeling of post-fire runoff and snowpack in Pacific-Northwest". Data is described in detail in the README file.
DOI: 10.17632/945jcn2r59
title: LINF_270026900

description: 2-O-ribose RNA methyltransferase SPB1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/988773dtym
title: LINF_330037900

description: cysteine peptidase - Clan CA - family C51 | DAL2
Leishmania infantum (strain JPCM5)
DOI: 10.17632/ckt4bh77h8
title: LINF_290035100

description: START domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/hcbwnkx9fg
title: Dataset#1 Livestock in the life of Ekaterinburg in the 19th century based on the materials of protection excavations at 69 Dekabristov street

description: Dataset#1 Livestock in the life of Ekaterinburg in the 19th century based on the materials of protection excavations at 69 Dekabristov street. The dataset contains primary data, a list of pathologies, the size of the bones of cattle and caprines and the size of bones with pathologies. The article publishes the results of an archaeozoological study of faunal remains from a residential area of the city of Yekaterinburg, dating back to the 19th century. The aim of the work is to reconstruct the meat nutrition system of the city residents and the structure of the meat market, as well as to reconstruct the dimensional data of the livestock sold for sale. The materials of the work are represented by the bones of livestock, which are waste from cooking. A number of bone products are also considered, which are represented by dice and household items. When processing the bones of domestic animals, conventional archaeozoological techniques were used. Comparative data on modern cattle were used to interpret pathologies on the bones of livestock. Analysis of the osteological collection showed a noticeable prevalence of cattle bones over all other types of domestic animals. In the diet of the inhabitants of Yekaterinburg in the 19th century, beef was of paramount importance. For meat and subsequent sale, mainly young bulls and sheep were slaughtered. Butchering the carcasses of slaughtered cattle was carried out with an ax. Paleopathological analysis did not reveal evidence of unsatisfactory conditions for keeping livestock and the fact of the working use of bulls.
DOI: 10.17632/hxztcmnp89
title: Alternative Lengthening of Telomeres is a Self-Perpetuating Process in ALT-Associated PML Bodies

description: This data include the original images of western blots and microscopy for the paper titled "Alternative Lengthening of Telomeres is a Self-Perpetuating Process in ALT-Associated PML Bodies" Alternative lengthening of telomeres (ALT) is mediated by break-induced replication (BIR), but how BIR is regulated at telomeres is poorly understood. Here, we show that telomeric BIR is a self-perpetuating process. By tethering PML-IV to telomeres, we induced telomere clustering in ALT-associated PML bodies (APBs) and a POLD3-dependent ATR response at telomeres, showing that BIR generates replication stress. Ablation of BLM helicase activity in APBs abolishes telomere synthesis but causes multiple chromosome bridges between telomeres, revealing a function of BLM in processing inter-telomere BIR intermediates. Interestingly, the accumulation of BLM in APBs requires its own helicase activity and POLD3, suggesting that BIR triggers a feedforward loop to further recruit BLM. Enhancing BIR induces PIAS4-mediated TRF2 SUMOylation, and PIAS4 loss deprives APBs of repair proteins and compromises ALT telomere synthesis. Thus, a BLM-driven and PIAS4-mediated feedforward loop operates in APBs to perpetuate BIR, providing a critical mechanism to extend ALT telomeres.
DOI: 10.17632/jcnpzn3nnc
title: Relationship between bullous pemphigoid and malignancy_appendixS1

description: To conduct MR analyses, we utilized summary-level data obtained from the publicly available GWAS database. We used the GWAS with European descent as the datasource of genetic instruments. Genetic IVs for BP (n=218, 285) were obtained from GWAS in the FinnGen (https://www.finngen.fi/en). Genetic IVs for malignant tumors were all obtained from GWAS in the UK biobank (n = 442, 239).
DOI: 10.17632/kyvjvdzg2y
title: Spatio-Molecular Profiles Shape the Human Cerebellar Hierarchy Along the Sensorimotor Association Axis

description: Link data to Spatio-Molecular Profiles Shape the Human Cerebellar Hierarchy Along the Sensorimotor Association Axis
DOI: 10.17632/mfg64trszy
title: NGS datasets of Hordeum vulgare treated by ELICE16INDURES plant conditioner in fitotron

description: The research of plant-based biostimulants means a high potential in sustainable agriculture. A new generation plant biostimulant, named ELICE16INDURES® was produced in our institute, RIMPH LTD, Hungary and tested in fitotron and field-cultures of autumn barley (Hordeum vulgare) test crop. This liposome-formulated product contains eleven CO2 botanical extracts, that are rich in plant bio-active ingredients such as phenolic compounds, alkaloids, and flavonoids. This tech-nology based on cell-identical nano particles helps the better uptake and use of less amount of ac-tive ingredients. Gene expression profiling of this agent was tested in low and high (20 and 240 g*ha-1) dosage in fitotron experiments by using Illumina NextSeq550 sequencing. The processed NGS data of investigations are deposited here. 
The plant conditioning effect of low and high dosage of ELICE16INDURES was investigated in four repetitions of block system in field. The amount of the harvested crop showed significant increase of 27.5% and 39.9% interconnected to higher NDVI of 20% and 25% after low and high dosage of the investigated product, respectively.
DOI: 10.17632/mwr7mxpy3y
title: Getting towards Native-Speaker Writing in Examinations

description: The data contains 40 IELTS Task One texts, 15 written by non-native speakers (CEFR B2 (ACTFL A-L/M/H) English-level students) and 25 model texts written by natives, selected for error analysis. The two authors, assisted by Jafar Tavakoli, identified, classified, and quantified the errors, based initially on Hyland's (2005) framework. This, however, was found to be insufficient. We then developed a much larger framework as an assessment rubric, covering three main categories, ‘communication’, ‘morpheme form and meaning’, and ‘syntax and structure’. In the article, we do not give guidance in error correction itself. We only identify errors made by students and used these to develop a master table, useable as a model for both teachers and learners worldwide. 

Statistically, most errors were in meaning-bearing items, including false friends, L1 transfer, interlanguage, wrong word use, syntax used with wrong semantic force, and so on. Mistakes in grammar as such seem to be statistically relatively rare – yet so many of us teachers focus more on grammar than on meaning transfer. The assessment rubric helps refocus on meaning.

Generally, students at the CEFR B2 level plateau and make slower progress. It is important for students at this level to consciously raise their awareness, and this rubric can be useful for both teachers and learners to give a “statistical” set of figures of where the student has most difficulties and therefore needs to work a bit more. Teachers, therefore, can (re)design their coursework according to the frequency of the errors identified by the table. The assessment rubric, however, is suitable for learners of any intermediate to advanced level, from B1 to B2.
DOI: 10.17632/nxh3kpbr2s
title: First radiation wave of angiosperm pollen from upper Barremian–lower Aptian of the Arabian Plate

description: Palynological data from three boreholes in the Arabian Gulf (612-383, 780-91, 612-668).
DOI: 10.17632/sdk6wp3s88
title: Data for: Avian malaria on Madagascar: Prevalence, biodiversity and specialization of haemosporidian parasites

description: Supplementary files of Avian malaria on Madagascar: Prevalence, biodiversity and specialization of haemosporidian parasites Abstract: Previous studies about geographic patterns of species diversity of avian haemosporidian parasites did not include the avian biodiversity hotspot Madagascar. Since there are only few data available on avian malaria parasites on Madagascar we conducted the first large-scale molecular based study to investigate their biodiversity. 1,067 samples of 55 bird species were examined by a PCR method amplifying nearly the whole haemosporidian cytochrome b gene (1,063 bp). The parasite lineages found were further characterized phylogenetically and additionally the degree of specialization was determined with a newly introduced "Host-diversity" index (Hd). Our results demonstrate that Madagascar indeed represents a biodiversity hotspot for avian haemosporidian parasites as we detected 88 genetically distinct parasite lineages. Furthermore, by using a phylogenetic approach and including the sequence divergence we were able to assign the lineages to 29 groups i.e. supposed species. The here presented Hd-values for each parasite regarding host species, genus and family strongly support previous works demonstrating the elastic host ranges of some avian Haemosporida. In general, Plasmodium and Leucocytozoon species seem to be generalists whereas Haemoproteus species might be considered specialists. However, as demonstrated in various examples, single parasite species or lineages can deviate from this rule and should be examined individually.
DOI: 10.17632/v2wvfgzm53
title: Data for comparing the prediction of high precipitation among 7 layers in Mexico

description: The data are associated with the following article (please look there for all information): "Comparison among seven digital climate layers for estimating high annual precipitation in Mexico (≥ 1,500 mm)". Investigaciones Geográficas, Instituto de Geografía, UNAM. In preparation (August 2023).
DOI: 10.17632/vcy4jxp2x9
title: Dryspells_final_LMAversion

description: This table contains data from the final measurements on Qualea grandiflora (n=8) and Tabebuia aurea (n=10) after 130 days of no dry spell treatment, dry spells of 8 days or dry pells of 15 days. The Measures include H, Lnum, SM, RM, TM, RS, SLA, RGR, STRL, RER, RMF, SMF, RL, leaf area of three leaves from each individual and leaf mass from those leaves, LAm, LMt, LMF, NAR. The experiment was performed between July and October 2018 in a phytotron-type growth chamber in the Laboratório de Termobiologia of the University of Brasília, Brazil.
DOI: 10.17632/xnksp9jzgp
title: Database of patients with post-acute COVID-19 syndrome

description: This database is a revised version of the database published earlier. It contains additional data gathered by the researchers from the "Victor Babes" University of Medicine and Pharmacy, Timisoara.
DOI: 10.17632/ytwch4s89c
title: Measurement of compensatory arterial remodelling over time with serial coronary computed tomography angiography and 3D metrics 

description: scientific research for publishing the article
DOI: 10.17632/3pgb37wck4
title: YICSS Pakistan site dataset

description: This data set is from the Pakistan site of the multicenter study "Young Infants Clinical Signs Study Group. Clinical signs that predict severe illness in children under age 2 months: a multicentre study. Lancet. 2008 Jan 12;371(9607):135-42. DOI: 10.1016/S0140-6736(08)60106-3. PMID: 18191685. Data was collected for developing a simplified algorithm that can be used by first-level health care workers to identify young infants in need of hospital referral and care. The main study was carried out in 7 sites across 6 low- and middle-income countries (Dhaka, Bangladesh; La Paz, Bolivia; Kumasi, Ghana; Chandigarh, India; Delhi, India; Durban, South Africa and Karachi, Pakistan). Data was collected on socio-demographics, symptoms and clinical signs by trained Lady Health Workers. We examined the sensitivity, specificity, and odds ratio (OR) for each symptom and sign individually and combined them into algorithms to assess their value for predicting severe illness, excluding jaundice
DOI: 10.17632/4w32gzgvsv
title: Data for: Differential responses of soil bacterial communities to a prescribed fire in a paired restored and remnant prairie system

description: Restoration of prairie and oak savanna systems on former agricultural land is an important effort for improving soil health and ecosystem services. Restored and remnant systems in the same region are often managed using the same strategies, including implementation of prescribed fire. Yet, soil microbial communities and functions in these two types of systems are typically very different due to past land-use history and current plant community composition. In this study, we investigated the responses of soil bacterial communities, enzyme activities and putative functional pathways to the effects of prescribed fire in a paired remnant and restored prairie system located in southwest Michigan, USA. We examined the immediate effects of fire one day after the fire as well as the longer-term effects in a time series extending to 11-months after the fire. Our results indicate that the soil bacterial communities in the remnant were immediately responsive in composition but not in function. Additionally, remnant community composition in burned plots returned to the composition in the control within one month, indicating resiliency in this community. In contrast, soil bacterial communities in the restoration shifted both compositionally and functionally one day after the fire, and continued to differ after 11-months. Past land-use effects on bacterial community composition and site-level heterogeneity, coupled with present-day differences in plant communities and litter quantity, mediated the different responses in the two systems. Our results suggest that land management plans aimed at increasing soil functional resiliency may require different management strategies for restored and remnant prairies.
DOI: 10.17632/5d86tvfmmw
title: Data for: PREDICTORS OF TREATMENT OUTCOME OF WILMS TUMOUR IN LOW-INCOME COUNTRY; SINGLE CENTRE EXPERIENCE FROM PAKISTAN

description: SPSS of the data
DOI: 10.17632/6dzn4yxc3s
title: RAAS markers and COVID-19

description: Supplementary Figure 1A: Box and Whisker Plots of log Aldosterone to Renin Ratio, additionally adjusted for body mass index
Supplementary Figure 1B. Box and Whisker Plots of log Renin, additionally adjusted for body mass index
Supplementary Figure 1C. Box and Whisker Plots of log Aldosterone, additionally adjusted for body mass index
Supplementary Figure 2. Box and Whisker Plots of log ACE activity, additionally adjusted for body mass index
DOI: 10.17632/8f2d76f57y
title: Nanopore Sup. figure_ concordance analysisdata

description: Data for concordance analysis between Nanopore Sequencing and Sanger Sequencing, Rigshospitalet.
DOI: 10.17632/b925vjj7yc
title: Identification of human health and environmental impacts of blending processes of co-processing waste

description: Blending is an activity for the treatment and preparation of waste in the form of blends that are destined for co-processing in cement industries. The purpose of this study was to identify the impacts generated in the various blending stages. Through Life Cycle Assessment, impacts on an average production profile of 30.650 t / year of blends were estimated. A survey was carried out that identified one hundred and seventy-five types of industrial waste used in the treatment, identifying the industrial sector of origin according to data from the environmental agency. The system frontier approach was “gate to gate” and the functional 1 t blending unit. The impact assessment methodologies employed were ReCiPe and Impact 2002+, the latter being only with categories of health-related impacts. The results show that by the ReCiPe method, Human Toxicity was responsible for 53% of the total impact, caused by the emission of metals such as Selenium, Manganese, Arsenic and Barium. Through the Impact 2002+ method, Inorganic Inhalables obtained the highest total impact (51.8%) caused mainly by nitrogen oxides. The most impacting stages were mixing / resting and inerting. It is concluded that blending has a greater impact on human health, especially that of workers, who suffer from greater exposure. It is recommended to reassess the activity by the environmental and labor control bodies, prioritizing studies of process automation, epidemiological studies and, the continuation of the investigation of the impacts of the burning of the blends in the clinker furnaces in approach from the cradle to the gate.
DOI: 10.17632/fjdx4ks5fg
title: Supplementary data for paper "A Tiered Testing Strategy Based on In Vitro Phenotypic and Transcriptomic Data for Selecting Representative Petroleum UVCBs for Toxicity Evaluation In Vivo"

description: •	Supplementary File 1. BMDExpress output of A375 cell line, provided seperately as SuppFile1_BMD_A375.txt. The BMD values were calculated based on concentrations at 0 (vehicle controls), 1 (0.1% original extract), 10 (1 % original extract), and 100 (10 % original extract). 
•	Supplementary File 2. BMDExpress output of induced pluripotent stem cell-derived cardiomyocytes, provided seperately as SuppFile2_BMD_iPSCCM.txt. The BMD values were calculated based on concentrations at 0 (vehicle controls), 1 (0.1% original extract), 10 (1 % original extract), and 100 (10 % original extract).
•	Supplementary File 3. BMDExpress output of induced pluripotent stem cell-derived endothelial cells, provided seperately as SuppFile3_BMD_ iPSCEndo.txt. The BMD values were calculated based on concentrations at 0 (vehicle controls), 1 (0.1% original extract), 10 (1 % original extract), and 100 (10 % original extract).
•	Supplementary File 4. BMDExpress output of induced pluripotent stem cell-derived hepatocytes, provided seperately as SuppFile4_BMD_ iPSCHep.txt. The BMD values were calculated based on concentrations at 0 (vehicle controls), 1 (0.1% original extract), 10 (1 % original extract), and 100 (10 % original extract).
•	Supplementary File 5. BMDExpress output of induced pluripotent stem cell-derived neurons, provided seperately as SuppFile5_BMD_ iPSCNeu.txt. The BMD values were calculated based on concentrations at 0 (vehicle controls), 1 (0.1% original extract), 10 (1 % original extract), and 100 (10 % original extract).
•	Supplementary File 6. BMDExpress output of MCF 7 cell line, provided seperately as SuppFile6_BMD_MCF7.txt. The BMD values were calculated based on concentrations at 0 (vehicle controls), 1 (0.1% original extract), 10 (1 % original extract), and 100 (10 % original extract).
•	Supplementary File 7. BMDExpress output of A375 cell line, provided seperately as SuppFile7_BMD_A375.bm2. 
•	Supplementary File 8. BMDExpress output of induced pluripotent stem cell-derived cardiomyocytes, provided seperately as SuppFile8_BMD_iPSCCM. bm2. 
•	Supplementary File 9. BMDExpress output of induced pluripotent stem cell-derived endothelial cells, provided seperately as SuppFile9_BMD_ iPSCEndo. bm2. 
•	Supplementary File 10. BMDExpress output of induced pluripotent stem cell-derived hepatocytes, provided seperately as SuppFile10_BMD_ iPSCHep. bm2. 
•	Supplementary File 11. BMDExpress output of induced pluripotent stem cell-derived neurons, provided seperately as SuppFile11_BMD_ iPSCNeu. bm2. 
•	Supplementary File 12. BMDExpress output of MCF 7 cell line, provided seperately as SuppFile12_BMD_MCF7. bm2.
DOI: 10.17632/g9kfdj2cky
title: supplementary files

description: supplementary materials
DOI: 10.17632/jckgrfch5h
title: Survey Responses of Enablers and Barriers for SCF Investments in Pharma 4.0

description: These files contain the 15 responses that have been obtained in the form of "V, A, X, O" for creating the Structural Self-Interaction Matrix used for the research on the factors that are going to aid or block SCF Investments in Pharma 4.0. This data has been obtained from people associated with pharmaceutical manufacturing firms in India, and no two respondents belong to the same company.