cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.35078/8fflqr/8uegsn
title: Santinho Labanca A.jpg

description: :unav
DOI: 10.35078/vab7gf/k2nsl1
title: Bananal de Cima A.jpg

description: :unav
DOI: 10.48370/ofd/7x1zhd/1fn3cs
title: MRIPAS_coll_138032_BisonBonasus_1980_F_juv_skull_without_horns_scan3D.stl

description: :unav
DOI: 10.48370/ofd/7x1zhd/ddwih6
title: MRIPAS_coll_138032_BisonBonasus_1980_F_juv_skull_with_horns_scan3D.stl

description: :unav
DOI: 10.35078/vab7gf/qx8ls3
title: Cabeceira Jataí Pequeno D.jpg

description: :unav
DOI: 10.48370/ofd/7x1zhd
title: Bison bonasus - 138032, Zoological collection of the Mammal Research Institute, PAS

description: Bison bonasus (European bison) from Zoological collection of the Mammal Research Institute, PAS. Collected 1980-09-25 in: Białowieża Forest, Breeding Reserve, Poland. Material type: skull, jaw
DOI: 10.5061/dryad.n9v91/1
title: NeritaMicrosats

description: Microsatellite data of Nerita atramentosa in GenAlEx file format.
DOI: 10.5061/dryad.ng8p1/1
title: Worksheet with demographics and performance data

description: Worksheets contain (1) demographics, (2) summary of demographics, (3) musical experience questionnaire data, (4) mapping phase data from eprime, (5) configural learning task data from eprime. All formulas are retained in the merged files with eprime output, to see how we derived basic performance data such as RT and accuracy.
DOI: 10.5061/dryad.nn493/1
title: Enclosure Updated Data Sheet

description: Data for Gordon et al. JAE-2015-00035.R1 Colour polymorphism, torn apart by opposing positive frequency-dependent selection, yet maintained in space.Gordon, Swanne; Kokko, Hanna; Rojas, Bibiana; Nokelainen, Ossi; Mappes, Johanna
DOI: 10.5061/dryad.p732k/1
title: AlyMorphPrePlant1014

description: This comma-delimited file contains data for all plants initially established in the growth chamber study, including survival and dates of lateral shoot development, bolting and flowering.  These data are the basis for the analyses in Table 3 of the Remington et al. BMC Plant Biology manuscript.
DOI: 10.5061/dryad.p732k/2
title: AlyMorphPostPlant1113

description: This comma-delimited file contains data recorded by plant on all plants for which detailed morphological analyses were conducted.  Many of the fields are the same or similar to those in AlyMorphPrePlant1014.csv.  Data from this file were used in the analyses in Table 3, Table 4, and Figure 5 of the Remington et al. BMC Plant Biology manuscript.
DOI: 10.5061/dryad.p732k/3
title: AlyMorphPostInfl1113

description: This comma-delimited file contains data collected on each inflorescence-bearing shoot, for plants on which detailed morphological analyses were conducted.  These data are summarized in Figure 4 of the Remington et al. BMC Plant Biology manuscript.  Mean values of the traits Leaf and LeafSize by plant are incorporated into the analyses in Table 3, Table 4, and Figure 5.
DOI: 10.5061/dryad.ts351/10
title: infileTac67 for Migrate-N

description: Data input file for Migrate-N
DOI: 10.5061/dryad.ts351/11
title: parmfile Migrate-N

description: Parameter file used for both population pairs
DOI: 10.5061/dryad.ts351/12
title: Allele frequency estimates from PoolSeq analysis

description: Popoolation output file containing the read count data for polymorphic sites. The first column is the scaffold number (chr), the second the position on the scaffold	(pos), the third is the base in the reference genome (rc), number of alleles (allele_count), allelic states (allele_states), number of deletions (deletion_sum),  whether the snp is variable among populations or against the reference (snp_type), the major alleles in the populations in the order Tac-C, Tac-S, Puy-C, Puy-S (major_alleles(maa)), the same for minor alleles (minor_alleles(mia)), alleles frequency estimates of the major allele expressed as ratio of reads for the respective population (maa_1, maa_2, maa_3, maa_4), and the same for the minor alleles (mia_1, mia_2, mia_3, mia_4)
DOI: 10.5061/dryad.ts351/6
title: Puy-S Tajima's D

description: Tajima's D output for 1000bp windows for Puy-S. There is no option in the script to suppress the non-informative windows, so there are lots of windows with "na" that fail the coverage criteria so no calculation is made.
DOI: 10.5061/dryad.ts351/7
title: Tac-C Tajima's D

description: Tajima's D output for 1000bp windows for Tac-C. There is no option in the script to suppress the non-informative windows, so there are lots of windows with "na" that fail the coverage criteria so no calculation is made.
DOI: 10.5061/dryad.ts351/8
title: Tac-S Tajima's D

description: Tajima's D output for 1000bp windows for Tac-S. There is no option in the script to suppress the non-informative windows, so there are lots of windows with "na" that fail the coverage criteria so no calculation is made.
DOI: 10.5061/dryad.ts351/9
title: infilePuy68 for Migrate

description: Data input file for Migrate-N analysis
DOI: 10.5061/dryad.v4t80/3
title: KD-Database

description: These data represent the K-D Database, as defined in the main text. These selection estimates are not new; they were extracted from previously-compiled databases on phenotypic selection. They are presented here in Dryad only to facilitate replication of results presented in the main text, and to allow the reader to determine which studies estimated selection on juvenile size traits, and which studies estimated selection on adult size traits. For original data, consult: [Kingsolver, J., and S. Diamond. 2011. Data from: Phenotypic selection in natural populations: what limits directional selection? Dryad Digit. Repos. doi10.5061/dryad.7996.] and [Siepielski, A. M., K. M. Gotanda, M. B. Morrissey, S. E. Diamond, J. D. DiBattista, and S. M. Carlson. 2013. The spatial patterns of directional phenotypic selection. Ecol. Lett. 16:1382–92.]
DOI: 10.5061/dryad.07mc1/1
title: Time-series of infected red blood cells for different Plasmodium chabaudi chabaudi clones in mice

description: Time-series of infected red blood cells (×10−2 μl–1) for different Plasmodium chabaudi chabaudi clones in mice (column headings 5 onwards show days). Two treatments (IgG and hu-IgG) corresponding to the relevant control groups for different experimental designs are distinguished but do not result in differences in these time-courses. Original papers in which the data were first reported, and in which controls were compared with immune-depleted hosts, are shown in the first column.
DOI: 10.5061/dryad.4478v/1
title: Tobacco_stain_PlosOne_2

description: Information collected on admission to a tertiary hospital. Follow up for death and hospital readmission
DOI: 10.5061/dryad.65r63/1
title: Pischedda et al. 2015 Evolution data

description: This Excel Spreadsheet contains all of the fitness measurements used in the associated manuscript.
DOI: 10.5061/dryad.6b5n7/1
title: Appendix

description: Index for all appendix resources, normalization of diet trait values, strict consensus tree for included taxa, AICc scores for models of diet evolution, ancestral state reconstruction of folivory, non-phylogenetic correlation of folivory index and body mass, ranges of phylogenetic signal in herbivory and body mass, correlation of folivory and body mass contrasts, literature cited in meta-analysis.
DOI: 10.5061/dryad.6b5n7/2
title: Appendix S1

description: Excel spreadsheet with the complete diet and body mass (from Dunning 2008) dataset, including associated metadata, listed by species, season and locality.
DOI: 10.5061/dryad.6b5n7/3
title: Appendix S2

description: Excel spreadsheet containing the mean dietary category sums, dietary indices and body masses for each species in Appendix S1 (compact version of Appendix S1).
DOI: 10.5061/dryad.6b5n7/4
title: Appendix S10

description: Phylogenetic independent contrast results, correlation coefficients and branch length transformations.
DOI: 10.5061/dryad.72fg9/1
title: Single gene amino acid alignments of the 21 nuclear genes

description: Fasta files containing the single amino acid nucleotide alignments of the 21 nuclear genes. The alignments were created using MAFFT L-INS-i v7.013.
DOI: 10.5061/dryad.72fg9/2
title: Single gene amino acid alignments of the 21 nuclear genes Glocks processed

description: Fasta files containing the single gene amino acid alignments of the 21 nuclear genes after processing by Gblocks 0.91b (allowing for smaller final blocks, gap positions within the final blocks, and less strict flanking positions).
DOI: 10.5061/dryad.72fg9/3
title: Single gene nucleotide alignments of the 21 nuclear genes

description: Fasta files containing the single gene nucleotide alignments of the 21 nuclear genes. The nucleotide (codon) alignments are based on the amino acid alignments.
DOI: 10.5061/dryad.72fg9/4
title: Single gene nucleotide alignments of the 21 nuclear genes Glocks processed

description: Fasta files containing the single gene nucleotide alignments of the 21 nuclear genes after processing by Gblocks. The nucleotide (codon) alignments are based on the Gblocks processed amino acid alignments.
DOI: 10.5061/dryad.72fg9/5
title: Single gene nucleotide alignments of the combined dataset

description: Fasta files containing the single gene nucleotide alignments comprising data for five genes from the studies of Martinsen et al. (2008), Schaer et al. (2013) and Borner et al. (2015).
DOI: 10.5061/dryad.72fg9/6
title: Concatenated multigene aignments

description: Fasta files containing the concatenated multigene aignments of the datasets listed in Supplemental Table S4.
DOI: 10.5061/dryad.72fg9/7
title: readme
DOI: 10.5061/dryad.7h853/1
title: Dufeau-and-Witmer-2015_Alligator_OUVC10606_head_DICOM (1)

description: DICOM formatted CT data of a perinatal alligator head scanned at 45 μm slice thickness.
DOI: 10.5061/dryad.7h853/2
title: Dufeau-and-Witmer_2015-allometryData

description: Measurement data from an ontogenetic series of Alligator used to perform allometric analyses
DOI: 10.5061/dryad.8kc81/1
title: Chick data (2011)

description: Data from the year of anti-parasite treatment for each individual chick in the experiment: growth rate and survival, along with anti-parasite treatment group and unmanipulated traits such as hatch date, sex and rank.
DOI: 10.5061/dryad.8kc81/2
title: Parent data (2011)

description: Data from the year of anti-parasite treatment measured for each individual adult in the experiment: mass at the start and end of the experiment, along with anti-parasite treatment group and unmanipulated traits such as hatch date and sex.
DOI: 10.5061/dryad.8kc81/3
title: Long-term treatment effects

description: Data measured in the year following anti-parasite treatment for each experimental parent: hatch date and several aspects of breeding success, along with treatment group and unmanipulated traits such as sex and initial hatch date.
DOI: 10.5061/dryad.ck54h/10
title: P adspersus receptor recordings

description: All data and metadata related to receptor recordings from Pollimyrus adspersus.
DOI: 10.5061/dryad.ck54h/11
title: P tenuicauda receptor recordings

description: All data and metadata related to receptor recordings from Petrocephalus tenuicauda.
DOI: 10.5061/dryad.ck54h/12
title: Data analysis tools

description: All Matlab files used for data analysis
DOI: 10.5061/dryad.ck54h/13
title: P microphthalmus receptor recordings

description: All data and metadata related to receptor recordings from Petrocephalus microphthalmus.
DOI: 10.5061/dryad.ck54h/6
title: Group tank and single fish IPI recordings

description: Recordings of interpulse intervals (IPIs) produced by single fish and a group of fish in the species Petrocephalus tenuicauda and Petrocephalus microphthalmus
DOI: 10.5061/dryad.ck54h/7
title: P soudanensis receptor recordings

description: All data and metadata related to receptor recordings in Petrocephalus soudanensis.
DOI: 10.5061/dryad.ck54h/8
title: P tenuicauda rosette photos

description: All photos taken of rosettes in a single Petrocephalus tenuicauda. These photos contributed to Fig. 2A.
DOI: 10.5061/dryad.ck54h/9
title: B niger receptor recordings

description: All data and metadata related to receptor recordings from Brevimyrus niger.
DOI: 10.5061/dryad.cn58f/1
title: Experimental MPI Partial FOV Data

description: Experimental magnetic particle imaging partial field of view data of a coronary artery phantom and a double helix phantom.
DOI: 10.5061/dryad.d0g0d/1
title: Data for estimating the aggression intensity index

description: This file contains a table with 4 columns: (1)  wounds (number of observed wounds), (2)  n_inter (number of observed interactions), (3) n_oestrus (number of estrus females) and (4) N_males (number of males). Each row represents an observation day.
DOI: 10.5061/dryad.d0g0d/2
title: Data for model fitting

description: This file contains a table with 11 columns: (1) Date (coded as an integer numbers, for each group the date of the first interaction is set to 0), (2) Group (a unique integer for each group), (3) Winner (individual that won the interaction; note that individuals are coded as an integer numbers that are group-specific), (4) Loser (individual that lost the interaction), (5) hybrid_w (a floating point number that quantifies the estimated degree of anubis ancestry of the winner) , (6) hybrid_l (the estimated degree of anubis ancestry of the loser), (7) Age_w (the winner’s age in years), (8) Age_l (the loser’s age in years), (9) Lag_day_w (the number of days since the last observed agonistic encounter of the winner), (10) Lag_day_l (the number of days since the last observed agonistic encounter of the loser), (11) aggr_index (the estimated aggression intensity index). Each row represents an observated interaction.
DOI: 10.5061/dryad.d0g0d/3
title: R script for running the extended Elo rating model

description: This file contains the R code to fit the extended Elo model and plot k values. The code requires as input the file ‘ago_data.csv’ and the provided code needs to be modified to insert the correct path where this file was saved. The implemented plotting requires the R library ggplot2.
DOI: 10.5061/dryad.d5p60.2
title: Data from: Normal table of embryonic development in the four-toed salamander, Hemidactylium scutatum
DOI: 10.5061/dryad.d5p60.2/1.2
title: Representative Stage Images

description: These folders contain representative images for each stage of the embryonic table.  Each image is numbered with two identifiers.  The first number represents the individual identifier and the second number is the image identifier.  Please contact the author for more details or to gain access to more images.
DOI: 10.5061/dryad.d5p60.2/2.2
title: Movie 1

description: Shows cleavage from a dorsal view of four embryos still in their jelly coats, from 4 cell through gastrula stages.   Epiboly is evident beginning at around 30 hours elapsed time (frame 180).  Embryos increase in diameter throughout cleavage and gastrulation.  Mesendoderm migration during gastrulation is faintly visible through the blastocoel roof during gastrulation, starting about 50 hours (frame 300), and appears less coherent than that of Xenopus. 10 minutes elapsed time per frame.  Playback at 15 frames per second (fps).  Scale bar is 1 mm.
DOI: 10.5061/dryad.d5p60.2/3.2
title: Movie 2

description: Shows dorsal view of cleavage through blastula stages.  Roughly 11 minutes per frame. 15 fps.  Scale bar is 1 mm.
DOI: 10.5061/dryad.d5p60.2/4.2
title: Movie 3

description: Shows vegetal view of cleavage from just before 4 cell stage through blastula stages.  Contraction of the vegetal region is apparent by about 20 hours elapsed time (frame 120).  10.5 minutes per fame, 15 fps.  Scale bar is 1 mm.
DOI: 10.5061/dryad.d5p60.2/5.2
title: Movie 4

description: Shows vegetal cleavage and the large amount of contraction that occurs in the vegetal endoderm leading up to blastopore formation.  Contraction begins at about 3.3 hours elapsed time (frame 20). Blastopore formation begins at 16.5 hours elapsed time (frame 94) and is complete by the end of the movie (23 hours elapsed).  There is an abnormally large cell just vegetal of the blastopore.  10.5 minutes per frame, 15 fps. Scale bar is 1 mm.
DOI: 10.5061/dryad.d5p60.2/6.2
title: Movie 5

description: A later view showing blastopore formation at stage 10 and the large amount of contraction that occurs in the vegetal endoderm.  Blastopore formation starts about 4 hours elapsed time (frame 25) and continues to the end of the movie (about 13.7 hours).  Both here and in movie 4, vegetal endoderm contraction appears to end as blastopore formation is complete. 10 minutes per frame, 15 fps. Scale bar is 1 mm.
DOI: 10.5061/dryad.dh769/1
title: Ostrich Movement Records 2009-2014

description: This dataset includes all data that was used for the paper. It includes each movement that occurred in the Ostrich export industry between September 2009 - March 2014 (excluding May-Aug 2011 which is explained in the paper).  The columns of data include: Source (Farm ID where the shipment of ostriches originated), Target (Farm ID where shipment of ostriches are being sent to), Weight (the number of ostriches being moved), Year (year the movement occurred) and Month (month the movement occurred).
DOI: 10.5061/dryad.dv0qt.2
title: Data from: The effect of trait type and strength of selection on heritability and evolvability in an island bird population
DOI: 10.5061/dryad.hj20g/1
title: Full sampling alignment Copiapoa phylogeny

description: Full sampling alignment including 109 sequences of 39 Copiapoa taxa and selected outgroup species. Often multiple accessions per Copiapoa taxon are included. Three cpDNA markers: ycf1 (coding), trnH-psbA & trnL-rpl32 (non-coding).
DOI: 10.5061/dryad.hj20g/2
title: Reduced sampling alignment Copiapoa phylogeny

description: Reduced sampling alignment including one individual per Copiapoa taxon and a reduced number of outgroup species. Three cpDNA markers: ycf1 (coding), trnH-psbA & trnL-rpl32 (non-coding).
DOI: 10.5061/dryad.kp153/1
title: Dataset S1 • Fossil ruminants occurrences

description: Information of ruminant species occurrences in the fossil record was compiled from the New and Old Worlds (NOW) database (Fortelius 2015) and the Paleobiology Database (Alroy 2015), both accessed in July 2014. Taxa not identified at the species level were excluded (1763 occurrences; see SI Text for their temporal distribution). Subsequently, the combined database was completed and refined with information from the literature (see SI Text) and information on synonyms provided by the NOW collaborators. This dataset contains 9234 fossil occurrences of 1246 ruminant species, spanning the last 50 myr. 9186 occurrences correspond to crown ruminants. We followed Metáis and Vislovokowa (2007) and considered crown ruminants all families except Hypertragulidae, Lophiomerycidae and Archaeomerycidae. Species belonging to the six extant families (8558 occurrences, 1100 species) represent around 88% of ruminant fossil diversity, being recorded continuously since around 24 Ma and making most of the ruminant fossil record since around 20 Ma.
DOI: 10.5061/dryad.kp6j2/1
title: Asian carp nuclear and mitochodrial SNP genotypes MOE

description: A unique code for each individual is given in the first column and each location sampled is represented by a four character acronym described in the manuscript.  The top 2 rows are bighead carp and silver carp species-specific SNPs that correspond to each locus (row 3).  Column two is the mitochondrial COII locus followed by 57 nuclear SNP loci.
DOI: 10.5061/dryad.kp6j2/2
title: Bighead and Silver carp parents mtDNA (COII) sequences

description: Each entry is in fasta format and starts with a four character location code, a unique number identifier for each individual, and a four letter code representing bighead carp (BHCP) or silver carp (SVCP) as resolved at 57 nuclear SNP loci.  These are trimmed sequences representing the parents used for SNP discovery.
DOI: 10.5061/dryad.kp6j2/3
title: SNP genotypes plus field and lab data on each fish

description: A unique code for each individual is given in the first column and each location sampled is represented by a four character acronym described in the manuscript. The top 2 rows are bighead carp and silver carp species-specific SNPs that correspond to each locus (row 3). Column ten is the mitochondrial COII locus followed by 57 nuclear SNP loci.  Following each unique individual code, starting in column 2 and ending in column 9, is the river reach of capture, river of capture, 57 locus genetic identification based on manual and NewHybrids assignment, morphological field identification, total length (mm), total weight (g), age as determined by postcleithra annuli counts, and birth year determined by subtracting the age from the year of capture.
DOI: 10.5061/dryad.n0b44/1
title: Copilas-Ciocianu&Petrusek_Gammarus_fossarum_SW_Carpathians_alignments&trees

description: The archive contains alignments (fasta format) and maximum likelihood trees (newick format) for each of the markers used in this study as well as a concatenated supermatrix.
DOI: 10.5061/dryad.p3c75/1
title: SummaryNetLevelDryad

description: Network-level characteristics for the 33 study networks
DOI: 10.5061/dryad.q4747/1
title: alignement for leaf-miner phylogeny

description: alignement for leaf-miner phylogeny based on COI, Ef1-alpha, histone3 and wingless.
DOI: 10.5061/dryad.q4747/2
title: 16S gene alignement for Wolbachia phylogeny

description: 16S gene alignement for Wolbachia phylogeny
DOI: 10.5061/dryad.q4747/3
title: wsp based alignment for Wolbachia phylogeny

description: wsp based alignment for Wolbachia phylogeny
DOI: 10.5061/dryad.0262m/2
title: Lilac Honeysuckle 1956-2014 leafing and flowering phenology v13

description: The dataset is comprised of leafing and flowering data collected across the continental United States from 1956 to 2014 for purple common lilac (Syringa vulgaris), a cloned lilac cultivar (S. x chinensis ‘Red Rothomagensis’) and two cloned honeysuckle cultivars (Lonicera tartarica ‘Arnold Red’ and L. korolkowii ‘Zabeli’). Applications of this observational dataset range from detecting regional weather patterns to understanding the impacts of global climate change on the onset of spring at the national scale. While minor changes in methods have occurred over time, and some documentation is lacking, outlier analyses identified fewer than 3% of records as unusually early or late.  Lilac and honeysuckle phenology data have proven robust in both model development and climatic research.
DOI: 10.5061/dryad.0c96p/1
title: All learning data for experiment and summary

description: The first tab is a summary of all bees used and what they did (bees that did not collect nectar or pollen or only collected small amounts of one were not included in main learning analysis). The second tab is all behavioural data with key in text box.
DOI: 10.5061/dryad.4429j/1
title: Data and R code to estimate abundance

description: This zip folder contains: (1) file containing the locations of ID'd individuals on Cumberland Island; (2) the locations of transects (x-y of center of each 200-m segment); (3) shapefiles of island boundary (multiple files); (4) R code for spatially explicit capture-recapture population estimation (SECR) for abundance
DOI: 10.5061/dryad.4429j/2
title: Cumberland Island Genotypes

description: Microsatellite genotypes of all bobcat scats collected on Cumberland Island (1st spreadsheet tab), and summary of genotypes of 9 bobcats that could be individually identified (2nd spreadsheet tab). Amplification conditions are described in primary manuscript (Diefenbach et al.) and in associated supplementary information.
DOI: 10.5061/dryad.5q034/1
title: Brain region sizes, body mass, wing morphology and migration distance in 152 species of birds

description: This table contain data on 152 species of birds, from 61 avian orders and from six continents. Data covers: migration distance (km), body mass (g), brain mass (g), size of cerebellum (g), size of telencephalon (g), size of optic lobe (g), wing aspect ratio (dimensionless) and wing area (m2).
DOI: 10.5061/dryad.5qv85/1
title: DatasetRougemont_et_al_2015JEB

description: Dataset of 13 microsatellite and 1023 individuals