cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/nje-ky8-sxd
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.15829403
title: Mitochondrial DNA copy number and pyrosequencing-based methylation profile in muscular dystrophies: a promising predictive tool

description: The database includes the raw data of the article “Mitochondrial DNA copy number and pyrosequencing-based methylation profile in muscular dystrophies: a promising predictive tool”. Muscular Dystrophies (MD) are genetic disorders characterized by progressive muscle weakness. Mutations in the DMD gene, encoding dystrophin, are a primary cause, leading to Duchenne (DMD) or Becker (BMD) muscular dystrophy. Mitochondrial dysfunction, including impaired ATP production, significantly contributes to MD pathology. Epigenetic mechanisms, particularly DNA methylation, regulate mitochondrial DNA (mtDNA) and influence mitochondrial function. This study investigated mtDNA D-loop methylation and mtDNA copy number in 24 muscle biopsies (6 BMD, 12 DMD, 6 controls) and 67 blood samples (18 BMD, 28 DMD, 21 controls). We found significantly lower D-loop methylation in blood samples of DMD and BMD patients compared to controls, with an opposite trend in muscle biopsies. mtDNA copy number was significantly reduced in both muscle and blood from patients across all mitochondrial genes analyzed. Notably, muscle mtDNA copy number effectively differentiated between DMD and BMD patients (AUC > 0.96), with mt-TL1 copy number showing perfect discrimination for DMD vs. controls (AUC = 1.0). In peripheral blood, D-loop methylation and mtDNA copy number showed good discriminatory power for MD patients vs. controls (AUC > 0.70), but not for distinguishing between DMD and BMD. These findings highlight significant tissue-specific and phenotype-specific alterations in mtDNA methylation and copy number in MD. Our results suggest that muscle mtDNA copy number could serve as a robust biomarker for differentiating MD phenotypes, while combined peripheral blood markers hold promise for less invasive diagnostic strategies for muscular dystrophies. Future studies with larger cohorts are needed to validate these findings and explore their functional implications.
DOI: 10.5281/zenodo.15829404
title: Mitochondrial DNA copy number and pyrosequencing-based methylation profile in muscular dystrophies: a promising predictive tool

description: The database includes the raw data of the article “Mitochondrial DNA copy number and pyrosequencing-based methylation profile in muscular dystrophies: a promising predictive tool”. Muscular Dystrophies (MD) are genetic disorders characterized by progressive muscle weakness. Mutations in the DMD gene, encoding dystrophin, are a primary cause, leading to Duchenne (DMD) or Becker (BMD) muscular dystrophy. Mitochondrial dysfunction, including impaired ATP production, significantly contributes to MD pathology. Epigenetic mechanisms, particularly DNA methylation, regulate mitochondrial DNA (mtDNA) and influence mitochondrial function. This study investigated mtDNA D-loop methylation and mtDNA copy number in 24 muscle biopsies (6 BMD, 12 DMD, 6 controls) and 67 blood samples (18 BMD, 28 DMD, 21 controls). We found significantly lower D-loop methylation in blood samples of DMD and BMD patients compared to controls, with an opposite trend in muscle biopsies. mtDNA copy number was significantly reduced in both muscle and blood from patients across all mitochondrial genes analyzed. Notably, muscle mtDNA copy number effectively differentiated between DMD and BMD patients (AUC > 0.96), with mt-TL1 copy number showing perfect discrimination for DMD vs. controls (AUC = 1.0). In peripheral blood, D-loop methylation and mtDNA copy number showed good discriminatory power for MD patients vs. controls (AUC > 0.70), but not for distinguishing between DMD and BMD. These findings highlight significant tissue-specific and phenotype-specific alterations in mtDNA methylation and copy number in MD. Our results suggest that muscle mtDNA copy number could serve as a robust biomarker for differentiating MD phenotypes, while combined peripheral blood markers hold promise for less invasive diagnostic strategies for muscular dystrophies. Future studies with larger cohorts are needed to validate these findings and explore their functional implications.
DOI: 10.3535/pdb-xh5-200
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1gt-5w0-6kz
title: Graphium eurypylus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vvt-g73-6r8
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/49r-fg2-wcb
title: Caradrina (Caradrina) Ochsenheimer, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wpy-687-jnz
title: Hoplodrina octogenaria (Goeze, 1781)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8kj-msh-ply
title: Pachliopta adamas (Zincken, 1831)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s8b-f3v-5z4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1k7-dw6-g7k
title: Papilio memnon Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3k1-bbp-qss
title: Acronicta (Viminia) menyanthidis (Esper)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/36d-m18-0j6
title: Euploea Fabricius, 1807

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wqz-htx-e28
title: Troides helena (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3gs-efn-nly
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zak-v4d-dt9
title: Caradrina (Paradrina) clavipalpis (Scopoli, 1763)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bbj-9bb-d51
title: Acronicta (Acronicta) Ochsenheimer, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mzv-e7d-x8z
title: Caradrina (Paradrina) clavipalpis (Scopoli, 1763)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.kzaxcp
title: Occurrence Download

description: A dataset containing 19162 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mikania micrantha Kunth"
 ]
}

 The dataset includes 19162 records from 426 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102617-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/q3g-97q-0s0
title: Papilio demolion Cramer, [1776]

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/th9-75p-5k4
title: Papilio memnon Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dkf-jdm-x2g
title: Acronicta (Subacronicta) Kozhanchikov, 1950

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/733-jc4-9kb
title: Amphipyra (Amphipyra) pyramidea (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m7s-ahj-y10
title: Papilio peranthus Fabricius, 1787

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n32-96s-y93
title: Papilio nephelus Boisduval, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e4m-xre-lxb
title: Cucullia asteris ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lcq-gjb-k6n
title: Papilio nephelus Boisduval, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9wx-ahe-ds5
title: Elaphria venustula (Hübner, 1790)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p1p-f9y-w6x
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ps0-lmm-an3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w6j-p0g-fvf
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/16f-77k-mvm
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z62-jr7-m5j
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bga-l5f-ftl
title: Papilionidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1xt-xsr-55j
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2bw-ty2-8q8
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k6z-vfw-hbt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fpn-9bf-e4p
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.wjrapd
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Drosera capillaris Poir.",
 "Year 2010-2020"
 ]
}

 The dataset includes 52 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102620-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/n5r-xhf-7k4
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s35-90t-d7s
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/apc-zqb-e3a
title: Jamides Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jz6-e49-qfg
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q7l-lzz-z07
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zg2-9qv-e53
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2hr-jfv-ymd
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g21-xy7-6hq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y4p-hjv-c6x
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nee-8j8-mw4
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r5x-qvg-ej6
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.px43su
title: Occurrence Download

description: A dataset containing 272885 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-69.55817 -0.58085,-70.04223 -4.35227,-68.39645 -3.38639,-67.5723 -2.90636,-67.23473 -2.70968,-65.39533 -2.12934,-65.78257 -0.29043,-69.55817 -0.58085))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 272885 records from 456 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007107-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efhstz
title: Occurrence Download

description: A dataset containing 285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Puma concolor",
 "Year 1960-1970"
 ]
}

 The dataset includes 285 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007125-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/9b48a7a23303f2a66eec59313390cc11
title: Quantifying Changes along Mainland Marshes in the Virginia Coast Reserve, 1957-2011: GIS data

description: This dataset contains data that quantifies the long-term rate of change in the shoreline position along seaside mainland marshes of the Virginia Coast Reserve between 1957 and 2009. It also contains data that delineates potential areas available for future marsh transgression under three different sea level rise scenarios based on current land use and elevation data. 
 Shoreline position was determined for ten individual mainland marsh sites 3-4 km in length, plus the full length of the mainland marsh edge along the entire seaside length of the peninsula, based on aerial imagery from 1957, 1966, 1989, 2002, and 2009. The ten marsh sites (north to south) were at Gargathy Bay, Cedar Island Bay, Hummock Cove, Wachapreague, North Matulakin Marsh, Short and Long Prong Marshes, Crabbing Marsh, Oyster, Mockhorn Bay, and Marion Scott Cove.
 Metrics of the rate of change were determined using the Digital Shoreline Analysis System (DSAS), an ArcGIS extension (Thieler et al., 2009). Given the digitized shorelines and a parallel baseline as inputs, DSAS creates evenly-spaced transects perpendicular to the baseline and calculates the rate of shoreline change using a variety of methods, including the End Point Rate (EPR), linear regression rate (LRR), and various iterative and weighted linear regressions. Statistics for these regressions are included in the transect and summary point attribute data.
 Areas potentially suitable for future marsh transgression based on land use were determined based on 2005 NOAA Coastal Change Analysis Program (CCAP) data and consisted of upland and wetland areas currently in forest or scrub/shrub cover and adjacent to existing marshes. The acreage of these potential marsh areas that could be inundated and unavailable for marsh transgression under three different sea level rise scenarios was also determined based on elevation data from 2010 LiDAR surveys (see VCRLTER dataset VCR12194).
 Data on sediment grain size characteristics from the field collection portion of this study (2011) are not included with this GIS dataset; however, they are included in the companion VCRLTER dataset "Quantifying Changes along Mainland Marshes in the Virginia Coast Reserve, 1957-2011: tabular data" (VCR12191).
DOI: 10.15468/dl.errudm
title: Occurrence Download

description: A dataset containing 4596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lagerstroemia indica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4596 records from 344 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007126-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/11732b6818b08936b4b51a614c09c114
title: Species composition and plant functional traits on Hog and Metompkin Islands, VA 2016-2017

description: Physical characteristics (soil salinity, elevation, distance from shoreline) and biological parameters (species composition, cover, biomass, and functional traits) were measured for plants on Hog Island (Northampton Co. VA) and Metompkin Island (Accomack County, VA). Physical parameters were measured during 2016. Plant biomass, species composition, percent cover, and functional traits were measured in 2017. 
 Data Table 1: Environmental and geographic data on Hog and Metompkin Islands, VA 2016
 Data Table 2: Species composition and aboveground plant functional traits on Hog and Metompkin Islands, VA 2017
 Data Table 3: Vegetative biomass on Hog and Metompkin Islands, VA 2017
 Data Table 4: Plot-level root functional traits on Hog and Metompkin Islands, VA 2017
 Data Table 5: Latitude-longitude coordinates of plots on Hog and Metompkin Islands, VA 2016-2017
DOI: 10.3886/e239127
title: HIFLD OPEN Historical Holocene Volcano Locations

description: The Volcano Locations Database is a global listing of over 1600 volcanoes which includes information on the latitude, longitude, elevation, type of volcano, and last known eruption. These data are from the Smithsonian Institution Global Volcanism Program (GVP), "Volcanoes of the World" publication. Please go to their website for additional volcano status and eruption information. More information about volcanoes at National Center for Environmental Information (NCEI) at https://www.ncei.noaa.gov/.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.<b></b><br>
DOI: 10.3886/e239127v2
title: HIFLD OPEN Historical Holocene Volcano Locations

description: The Volcano Locations Database is a global listing of over 1600 volcanoes which includes information on the latitude, longitude, elevation, type of volcano, and last known eruption. These data are from the Smithsonian Institution Global Volcanism Program (GVP), "Volcanoes of the World" publication. Please go to their website for additional volcano status and eruption information. More information about volcanoes at National Center for Environmental Information (NCEI) at https://www.ncei.noaa.gov/.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.<b></b><br>
DOI: 10.6084/m9.figshare.30469115
title: Experimental protocols used in color rendering experiments (1959-2019)

description: This dataset details the experimental protocols (publications, researchers, participants, procedures, objects, independent and dependent variables, statistics) of color rendering experiments performed until 2019. A review of this data has been presented in the CIE 2019 conferences in Washington DC, USA.
DOI: 10.6084/m9.figshare.30469115.v1
title: Experimental protocols used in color rendering experiments (1959-2019)

description: This dataset details the experimental protocols (publications, researchers, participants, procedures, objects, independent and dependent variables, statistics) of color rendering experiments performed until 2019. A review of this data has been presented in the CIE 2019 conferences in Washington DC, USA.
DOI: 10.15468/dl.pndebe
title: Occurrence Download

description: A dataset containing 26414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Populus canescens",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26414 records from 490 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007128-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e239403
title: NASS General Estimates System

description: <pre>List GES directories which contain GES data files and/or documentation for individual years that can be downloaded.

Compilation of accident data from 1988 to 2015. </pre>
description: When downloaded, the original file name "Chang_log GES.htm" was changed to "NASS CDS FTP site changes.html"
DOI: 10.3886/e239403v1
title: NASS General Estimates System

description: <pre>List GES directories which contain GES data files and/or documentation for individual years that can be downloaded.

Compilation of accident data from 1988 to 2015. </pre>
description: When downloaded, the original file name "Chang_log GES.htm" was changed to "NASS CDS FTP site changes.html"
DOI: 10.5281/zenodo.15617350
title: Insights into the comprehensive carbon cycle in a mangrove ecosystem: A case study for understanding carbon burial, outgassing, and outwelling in a subtropical island

description: A dataset from the paper "Carbon Cycle in a Mangrove Ecosystem: Insights into Carbon Burial, Outgassing, and Outwelling in a Subtropical Island" submitted to Journal of Geophysical Research: Biogeosciences in 2025. The methods used for data collection and processing are detailed in the article.

This dataset was updated on October 30, 2025, to include additional information on latitude, longitude, and water level.
DOI: 10.5281/zenodo.17478739
title: Insights into the comprehensive carbon cycle in a mangrove ecosystem: A case study for understanding carbon burial, outgassing, and outwelling in a subtropical island

description: A dataset from the paper "Carbon Cycle in a Mangrove Ecosystem: Insights into Carbon Burial, Outgassing, and Outwelling in a Subtropical Island" submitted to Journal of Geophysical Research: Biogeosciences in 2025. The methods used for data collection and processing are detailed in the article.

This dataset was updated on October 30, 2025, to include additional information on latitude, longitude, and water level.
DOI: 10.15468/dl.n6zydr
title: Occurrence Download

description: A dataset containing 96296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-78.10317 41.22436,-77.56056 41.22436,-77.56056 41.65631,-78.10317 41.65631,-78.10317 41.22436))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 96296 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007102-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.