cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.20350/digitalcsic/12492
title: Nests dataset
title: Melanism influences the use of social information in a polymorphic owl. Nests [dataset]

description: Nest_ID Nest identification Treatment Experimental treatment applied to each nest Year Year of study Analysis_Nest Variable indicating data to analyse data per nest because each row represents a chick Laying date Laying date of the first egg within each nest Clutch size Total number of eggs in a clutch No. of fledglings No. of chicks that fledged per nest Predation_nest Variable showing whether a nest were predated (1) or not (0) Chick_ID Chick identification Fledging_weight Weight of chicks just before fledging Mean_fledgling_weight Mean weight of fledglings per nest Fledgling_NAbs Nabs level of each chick Mean_Nabs_fledglings Mean Nab level of chicks per nest Fledgling_success Variable showing whether a chick fledged (1) or not (0) Female_ID Female identification Female_color Female color as brownish (1) versus greyish (0) Male_ID Male identification Male_color Male color as brownish (1) versus greyish (0)
DOI: 10.20350/digitalcsic/10550
title: Thermal tolerance of Halophila stipulacea in its native and exotic distributional range [Dataset]

description: The dataset provides data on survival, rhizome elongation (cm day-1), recruitment rate (day-1), net population growth rate (day-1), gross primary production (GPP; mmol 02 day-1 gDW-1), respiration (R; mmol 02 day-1 gDW-1) and net production (NP; mmol 02 day-1 gDW-1) of exotic (Greece and Cyprus; Mediterranean) and native (Saudi Arabia; Red Sea) Halophila stipulacea populations exposed to 12 seawater temperature treatments ranging from 8 to 40°C.
DOI: 10.20350/digitalcsic/10865
title: Redness associates with inter-individual differencesin behaviour and hormone profiles in male scops owls (Otus Scops)[dataset]

description: Todos los años, a partir de la última semana de abril, se visitaron las cajas nido una vez por semana hasta que se detectó la puesta de huevos. Tras de la eclosión de los huevos, se visitaron los nidos semanalmente para registrar los parámetros reproductivos. La captura de adultos para este estudio se realizó a mano, mientras dormía en el nido en el caso de las hembras y, en el caso de los machos, con trampas para nidos cuando llevan alimento para los pollos. Todos los individuos se marcaron con anillas metálicas y fueron sexados según la placa de incubación (solo presente en hembras). Además, tras la captura, se fotografió a todos los adultos para la asignación de color, se extrajeron muestras de sangre y se recogieron plumas para evaluar el perfil de corticosterona y se midió la tasa de respiraciones por minuto. Además se midió la territorialidad de los machos como el tiempo que tardaron en responder al canto de otro macho en su territorio, así como la duración de esta respuesta. Para ello se emitieron cantos de machos adultos en el entorno del nido. En el caso de las hembras, se grabó su comportamiento de respuesta frente al investigador al visitarlas en el nido. Adicionalmente, se realizaron grabaciones internas en todos los nidos durante el periodo nidícola de los pollos, de las que se extrajeron datos sobre el tiempo de latencia en retornar al nido de ambos progenitores y las tasas de cebas aportadas al nido.
description: Parental care data; Behavioural traits and corticosterone levels data
DOI: 10.20350/digitalcsic/10547
title: Interspecific variation in deterioration and degradability of avian feathers: The evolutionary role of microorganisms [Dataset]

description: Data file includes (i) average values of melanised (M) and non-melanised (NM) feather wear of nestling birds that grew in different nests. The file also included (ii) information of feather mass degradability of nestlings and adult birds from different nests and species estimated as the olipeptide concentration (μg x mL1) of tubes containing 4mL of PBS buffer and a colony Bacillus licheniformis D13 after 21 days of incubation at 37 ºC in constant agitation at 120 rpm in an orbital agitator (VWR, Spain). The third excel sheet contain information of bacterial loads in terms of terms of mesophilic bacteria (TSA), Enterobacteriaceae (HK), Staphylococcus (VJ), and Enterococcus (KF), and average wear of melanised (M) and non-melanised (NM) wing feathers of nestlings that grew in the same nests where bacterial loads were estimated. The last excel file contain information on feather wear of melanised and non-melanised feathers of each sampled nestlings and adult. All these data were collected the Guadix region (southern Spain) and used to perform the statistical analyses in Tables 2 and 3 in Azcárate et al. 2020 (Doi: 10.1111/jav.02320).
DOI: 10.20350/digitalcsic/10541
title: Neural network simulation with hyperploid neurons

description: This data set comprises Comma Separated Values (.CSV) files containing the results of the simulated spiking neuronal network, MATLAB variable files (.MAT) and PNG figure files. All data was obtained by the Brian2 neural network simulator. CSV file can be visualized by any text editor. MATLAB files require MATLAB or Octave. We’ve created a neuronal network composed of 4,000 neurons of three types, with different proportion of hyperploid neurons – namely, condition (from 1% to 80%) - in each of these types: (i) excitatory neurons (EXC); (ii) leading neurons (LEAD), a subtype of excitatory neurons that constitute relevant hubs of the circuit; and (iii) interneurons, with inhibitory capacity (INH). Control networks (CONTROL) did not contain hyperploid neurons. Five repetitions of each condition were simulated. All data is organized hierarchically regarding condition and repetition, and experimental folder names contains date of creation (October 2018). Estibaliz Barrio-Alonso and Manuel Valero coded the simulation and the analysis scripts. All simulations were performed under a Windows 10 machine, with Python 2.7 and MATLAB R2018a.
description: When subjected to stress, terminally-differentiated neurons are susceptible to reactivate the cell cycle and become hyperploid. This process is well documented in Alzheimer’s disease (AD), where it may participate in the etiology of the disease. However, despite its potential importance, the effects of neuronal hyperploidy (NH) on brain function and its relationship with AD remains obscure. An important step forward in our understanding of the pathological effect of NH has been the development of transgenic mice with neuronal expression of oncogenes as model systems of AD. The analysis of these mice has demonstrated that forced cell cycle reentry in neurons results in most hallmarks of AD, including neurofibrillary tangles, Abeta peptide deposits, gliosis, cognitive loss, and neuronal death. Nevertheless, in contrast to the pathological situation, where a relatively small proportion of neurons become hyperploid, neuronal cell cycle reentry in these mice is generalized. We have recently developed an in vitro system in which cell cycle is induced in a reduced proportion of differentiated neurons, mimicking the in vivo situation. This manipulation reveals that NH correlates with synaptic dysfunction, and that membrane depolarization facilitates the survival of hyperploid neurons. This suggests that the integration of synaptically-silent, hyperploid neurons in electrically-active neural networks allows their survival while perturbing the normal functioning of the network itself, a hypothesis that we have tested in silico. To this aim, an `Integrate-and-fire´ simulation of neural networks containing hyperploid neurons was implemented using the Python-based Brian 2 simulator.
description: See Raw Data Index.docx
DOI: 10.20350/digitalcsic/10540
title: CALIBERIA_Site_CTD _V1.0

description: This item is made of 2 files, of which 1 is the dataset in TXT format and the other (Readme .txt) include a small description of the computed variables. Dataset contributed to the Projects RAIA, RAIAco, EXCAPA and CALIBERIA
description: This dataset contains information about the hydrographic cruises carried out off Cape Silleiro (NW Iberia, Atlantic Ocean) between July 2010 and June 2012. These cruises sampled CALIBERIA station, located at 42º05´ N, 9º23´ W (~350 m depth). A CTD (Seabird 911) equipped with fluorescence and oxygen sensors was used for these hydrographic cruises
DOI: 10.20350/digitalcsic/10536
title: Crecimiento de anillos de árboles [dataset] : datos usados para las Figuras 2 y 3 del artículo DeSoto et al. 2020 NatComm
title: datos usados para las Figuras 2 y 3 del artículo DeSoto et al. 2020 NatComm

description: Nuestro análisis está limitado por los estudios disponibles de mortalidad de árboles y crecimiento radial, que se centran en los bosques extra tropicales (en gran parte debido a limitaciones metodológicas) y principalmente en el hemisferio norte. Sin embargo, incluimos varias poblaciones de Austrocedrus y Nothofagus en el hemisferio sur y cubrimos vastas áreas en el hemisferio norte entre 31 y 63 grados norte y -112 y 93 este. Nuestra base de datos abarca poblaciones de árboles con un balance hídrico climático en términos de Índice de Aridez que oscilan entre 0.14 y 1.92, desde climas áridos hasta húmedos.
description: Se recolectaron los datos del anillo de crecimiento de los árboles de 58 trabajos de investigación publicados y no publicados. La recopilación de datos se basó en el trabajo del COST (Cooperación Europea en Ciencia y Tecnología) Action FP1106 STReESS. Seleccionamos sets de datos de crecimiento de anillos (TRW, mm) de la base de datos pan continental compilada por Cailleret et al. 2017 (Global Change Biol 23: 1675-1690) disponible en TRY (Plant Trait Database). Los criterios de selección fueron (i) los árboles tanto muertos como los supervivientes que crecen juntos en el mismo sitio, (ii) todas las series individuales de TRW presentaban datación cruzada, y (iii) la mortalidad fue inducida principalmente por la sequía, solo o en combinación con otros factores, como los escarabajos de la corteza, hongos o muérdagos. La base de datos incluye 118 sitios ubicados principalmente en los biomas boreales, templados y mediterráneos de América del Norte y Europa, con 22 especies de 10 géneros.
description: Los datos se componen de dos sets: 1) Data_Fig2, los logaritmos de los valores de resiliencia, resistencia y recuperación y 2) Data_Fig3, los datos de crecimiento de los cuatro años previos, el año de la sequía y los cuatro años posteriores; de los árboles de la base de datos publicada en Cailleret et al. 2017. Calculamos los valores de resiliencia según Lloret et al. 2011 (Oikos 120, 1909-1920) resistencia (razón entre el crecimiento durante y previo a la sequía), recuperación (razón entre el crecimiento posterior y durante la sequía) and resiliencia (razón entre el crecimiento previo y posterior a la sequía).
DOI: 10.20350/digitalcsic/10539
title: CALIBERIA_Site _V1.0

description: This item is made of 2 files, of which 1 is the dataset in TXT format and the other (Readme .txt) include a small description of the computed variables.-- Dataset contributed to the Projects RAIA, RAIAco, EXCAPA and CALIBERIA.-- Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
description: From July 2010 to June 2012, 21 hydrographic cruises were carried out off Cape Silleiro (NW Iberia, Atlantic Ocean). These cruises sampled CALIBERIA station, located at 42º05´ N, 9º23´ W (~350 m depth). A CTD (Seabird 911) equipped with fluorescence, oxygen, turbidity and transmittance sensors was used for these hydrographic cruises. Additionally, an oceanographic rosette with 12 Niskin bottles was casted during each cruise to collect discrete seawater samples at different depths
DOI: 10.20350/digitalcsic/10537
title: Survival and growth of Mediterranean woody plants from experimental communities in a restoration context [Dataset]

description: Monitoring of an experimental plantation of Mediterranean woody species during four years after planting. Information includes plant location, experimental plot, density, species mixture, annual survival, annual growth, and categories of plant vigor. Plant growth is derived from linear measurements: height, crown diameter, and basal diameter.
description: The dataset was used for analyzing the effect of plant density and species composition in the neighborhood on survival and relative growth rates of planted focal individuals
DOI: 10.20350/digitalcsic/10526
title: Ornamental throat feathers predict telomere dynamic and hatching success in spotless starling (Sturnus unicolor) males [Dataset]

description: Sexually selected signals reliably reflect individual phenotypic or genetic quality and, thus, survival prospects of holders. Telomere length is considered a good predictor of life expectancy and, consequently, exploring the links between telomere length and sexually selected traits is much needed to better understand the mechanisms that maintain the honesty of sexual signals. We manipulated the length of throat feathers in spotless starling (Sturnus unicolor) males (a sexually selected signal) before reproduction and explored its effects on telomere shortening and breeding performance in subsequent reproductive events. We did not detect an effect of the feathers clipping manipulation, but males with longer throat feathers before the experiment had shorter telomeres that also shortened more slowly than those of males with shorter throat feathers did. Moreover, length of throat feathers of males before manipulation was positively related to hatching success of second clutches. Thus, correlative but not experimental results support the expected associations between sexually selected signals, telomeres and reproduction. We discuss such results in scenarios of sexual selection where feather length reflects, but does not directly cause, telomere attrition and enhanced reproductive success. Males with longer throat feathers might be older, more experienced males (i.e., with shorter telomeres), able to buffer telomere shortening between reproductive events. Because of the absence of experimental effects, differential incubation effort of females cannot explain the detected association with hatching success, but other sexually selected traits that covary with throat-feather length could be responsible. Exploring those physiological and/or morphological characteristics related to throat-feather length should therefore be the matter of future research
description: Reproductive data; Telomere data
DOI: 10.20350/digitalcsic/12530
title: Consortium for Continental Reflection Profiling: COCORP Hardeman County, Texas

description: The field acquisition unit was a 48- channel MDS 8/Mandrel Data System; geophones were Electro-Technical Laboratory EV22C with a natural frequency of 7Vi Hertz; the VIBROSEIS technique was used, sources being five synchronized vibrators (three Y1100, each of 13V2 ton peak force, and two Y900, each of IOV2 ton peak force). Station spacing: 100 m (330 ft), geophone spread length 4.7 km (15,510 ft). Distance of source station to nearest geophone: 400 m (1,320 ft). 24 geophones per station, spread over a distance of 200 m (660 ft) (100 percent geophone overlap). Vibrator array: (Y900 — Y1100 — Y1100 — Y1100 — Y900) vibrators 18.3 m (60 ft) apart, move-up interval of 6.5 m (20 ft); 16 sweeps summed per record. Pilot signal: 15 sec duration; psweep, 10 to 32 Hertz. 8 msec sampling interval; 30 sec recording duration. Normal vibrator locations were spaced two stations apart.
description: In 1975 the Consortium for Continental Reflection Profiling (COCORP) acquired 37 km of 12-fold commonmidpoint (CMP) stacked seismic reflection profiles in Hardeman County, Texas (Oliver et al. 1976). The entire crustal section was the object of study, so a record length of 15 set (two-way traveltime) was recorded. Three separate profiles were arranged in an H-shaped pattern to provide two-dimensional (2-D) surface coverage.
DOI: 10.20350/digitalcsic/12619
title: Shifts in the developmental rate of Pelobates cultripes larvae cause decreased complexity of pigmentation patterns post metamorphosis

description: Amphibian larvae are plastic organisms that can adjust their growth and developmental rates to local environmental conditions. The consequences of such developmental alterations have been studied in detail, both at the phenotypic and physiological levels. While largely unknown, it is of great importance to assess how developmental alterations affect the pigmentation pattern of the resulting metamorphs, because pigmentation is relevant for communication, mate choice, and camouflage and hence influences the overall fitness of the toads. Here we quantify the variation in several aspects of the pigmentation pattern of juvenile spadefoot toads experimentally induced to accelerate their larval development in response to decreased water level. It is known that induced developmental acceleration comes at the cost of reduced size at metamorphosis, higher metabolic rate, and increased oxidative stress. In this study, we show that spadefoot toads undergoing developmental acceleration metamorphosed with a less complex, more homogeneous, darker dorsal pattern consisting of continuous blotches, compared to the more contrasted pattern with segregated blotches and higher fractal dimension in normally developing individuals, and at a smaller size. We also observed a marked effect of population of origin in the complexity of the pigmentation pattern. Complexity of the post-metamorphic dorsal pigmentation could therefore be linked to pre-metamorphic larval growth and development.
DOI: 10.20350/digitalcsic/12614
title: Red kite survival.

description: The data are organized into an .inp file, which includes data on the fates of Red kites (Milvus milvus) ringed as chicks in the nest in Doñana National and Natural Park. Each data column represents the capture history of each individual. Values of 1 indicate individuals observed to be alive. Values of zero indicate individuals that were either dead or not observed in a given year
description: This dataset incorporates data on the survival of Red kites (Milvus milvus) marked with PVC rings as chicks in the nest.
DOI: 10.20350/digitalcsic/12612
title: DATA_LONGTERM BMR

description: Los datos corresponden a un estudio a largo plazo en el metabolismo invernal del carbonero común (Parus major) en el norte de Finlandia a lo largo de 15 años. Comprobamos que la variación interanual en la tasa metabólica basal durante el invierno en individuos juveniles, depende no sólo de las condiciones ambientales durante el mismo inverno, sino también de las condiciones ambientales experimentadas durante el proceso de incubación, durante la época de cría anterior al invierno estudiado
DOI: 10.20350/digitalcsic/12613
title: Ontogeny of leukocyte profiles in a wild altricial passerine [dataset]

description: This study was conducted during three consecutive breeding seasons (from 2009 to 2011)
description: Ecophysiological studies have highlighted the relevance of the avian immune system in individual fitness prospects in the wild. However, studies on the ontogeny of avian immunity are scarce. We analyse age-related changes in the cellular constitutive immunity throughout nestling development, as well as its relationship with sex and brood size. We found that cellular constitutive immunity could be affected by age, sex, brood size or daily rhythm. Early-stage nestlings relied more on cells of the innate immunity rather than on cells linked to the adaptive immune system. Cellular immunity may not be fully mature in fledglings, as reflected by differences in phagocytic cell counts with regard to adults. Beyond the age-dependent effects, agranulocyte cell counts were affected by sibling competition while granulocyte cell counts showed a daily rhythm. We also show that the heterophil to lymphocyte ratio was negatively related to body weight when nestlings become more independent. Our study contributes knowledge to the fields of developmental immunology and ecological immunology based on essential components of the cellular immune system.
DOI: 10.20350/digitalcsic/12603
title: Dataset of the paper: Direct and correlated responses to artificial selection for growth and water-use efficiency in a Mediterranean pine

description: The excel file includes three dataset: The phenotypic data assessed in individual seedlings in the progeny trials (traits: tree growth and survival) (Sheet: Offspring 1), the phenotypic data assessed in composited samples by plot in the progeny trials (traits: d13C, mono, sesqui and diterpenes) (Sheet: Offspring 2) and the phenotypic data assessed in the parental population in which seeds were collected for establishing the progeny trials (Traits: height, diameter, d13C, barck thickness, resin flow, non volatile resin in needles and branches, total polyphenolics in needles and branches) (Sheet: Parental). See more details of the datasets in the Readme sheet. Methodological details for the data can be consulted in the corresponding paper (Suárez-Vidal et al. 2020. Am. J. Bot.).
description: Persistence of tree populations in the face of global change relies on their capacity to respond to biotic and abiotic stressors through plastic or adaptive changes. Genetic adaptation will depend on the additive genetic variation within populations and the heritability of traits related to stress tolerance. Because traits can be genetically linked, selective pressure acting on one trait may lead to correlated responses in other traits. To test direct and correlated responses to selection for drought tolerance and growth in Aleppo pine (Pinus halepensis Mill.), we selected trees in a parental population for higher growth and greater water-use efficiency (WUE) and compared their offspring with that of random trees of the parental population in two contrasting common gardens. Direct responses to selection for growth and WUE, and correlated responses for growth and tolerance to abiotic and biotic stressors were estimated. We found a strong response to selection and high realized heritability for WUE, but no response to selection was found for growth. Correlated responses to selection in other life-history traits were not significant, except for concentration of chemical defences (mono and sesquiterpene) which was significantly greater in the offspring of mother trees selected for growth than in that of unselected control trees. The empirical evidence of direct responses to selection for high WUE suggests that P. halepensis have the potential to evolve in response to rising drought stress. Contrary to our expectations, the results are not conclusive of a potential negative impact of WUE and growth selection on other key life-history traits.
DOI: 10.20350/digitalcsic/12601
title: BEC SMOS Sea Surface Salinity global L3 product (V.2.0) [Dataset]

description: - Data acquisition Satellite: ESA SMOS mission (Soil Moisture and Ocean Salinity). - Time coverage: 1 January, 2011 - 31 December, 2019. - Time resolution 9 days. - Maps frequency generation: Daily.- Spatial coverage. - Latitude range: 90ºS-90ºN Longitude range: 180ºW-180ºE. - Spatial resolution: 0.25ºx0.25º. - Spatial projectionWGS 84: Latitude-longitude projection WGS84. - Spatial grid: Latitude and longitude regular grid at 0.25 degrees. - Sensor: Satellite SMOS / MIRAS. - Source product: SMOS Level 1B (brightness temperature Fourier coefficients) v 621 provided by ESA. - Format NetCDF Climate and Forecast (CF) Metadata Conventions version 1.6. - Size 52.5 Gb
description: Develop a new algorithm and novel approaches with the aim of producing the best quality global satellite SSS product using SMOS data
description: High resolution sea surface salinity; Low resolution sea surface salinity; Sea surface salinity uncertainty