cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12872402.v1
title: Additional file of The nested structure of urban business clusters

description: Additional file of The nested structure of urban business clusters
DOI: 10.6084/m9.figshare.12872402
title: Additional file of The nested structure of urban business clusters

description: Additional file of The nested structure of urban business clusters
DOI: 10.6084/m9.figshare.7998491.v1
title: Cannabinoid receptor expression in estrogen-dependent and estrogen-independent endometrial cancer

description: The lack of good diagnostic/prognostic biomarkers and the often late presentation of endometrial cancer (EC) hinders the amelioration of the morbidity and mortality rates associated with this primarily estrogen-driven disease, a disease that is becoming more prevalent in the population. Previous studies on the expression of the classical cannabinoid receptors, CB1 and CB2, suggest these could provide good diagnostic/prognostic biomarkers for EC but those observations have been contradictory. In this study, we sought to resolve the inconsistency of CB1 and CB2 expression levels in different EC studies. To that end, we used qRT-PCR and immunohistochemistry (IHC) for CB1 and CB2 in endometrial biopsies from women with or without EC and found that transcript levels for both CB1 and CB2 were significantly decreased by 90 and 80%, respectively in EC. These observations were supported by histomorphometric studies where CB1 and CB2 staining intensity was decreased in all types of EC. These data suggest that the loss of both types of CB receptors is potentially involved in the development of or progression of EC and that CB1 and CB2 receptor expression could serve as useful histological markers and therapeutic targets in the treatment of or prevention of EC.
DOI: 10.6084/m9.figshare.7998362
title: An iterative decomposition for asynchronous mixed-model assembly lines: combining balancing, sequencing, and buffer allocation

description: Asynchronous Mixed-Model Assembly lines are common production layouts dedicated to large-scale manufacturing of similar products. Cyclically scheduling such products is an interesting strategy to obtain high and stable throughput. In order to best optimise these lines, it is necessary to combine line balancing, model sequencing, and buffer allocation. However, few works integrate these three degrees of freedom, and evaluating steady-state performance as a consequence of these decisions is challenging. This paper presents a mathematical model that allows an exact steady-state performance evaluation of these lines, and hence their optimisation. While the combination of degrees of freedom is advantageous, it is also computational costly. An iterative decomposition procedure based on alternation between two mathematical models and on optimality cuts is also presented. The decomposition is tested against the proposed mathematical model in a 700-instance dataset. The developed methods obtained 142 optimal answers. Results show that the decomposition outperforms the monolithic mathematical model, in particular for larger and harder instances in terms of solution quality. The optimality cuts are also shown to help the decomposition steps in terms of solution quality and time. Comparisons to a sequential procedure further demonstrate the importance of simultaneously optimising the three degrees of freedom, as both the proposed model and the decomposition outperformed such procedure.
DOI: 10.6084/m9.figshare.7998353
title: SE_Sulawesi_Zosterops_song

description: A dataset for avian song for Zosterops white-eyes from the islands of South-east Sulawesi, used for the Zoological Journal of the Linnean Society paper: "A sympatric pair of undescribed white-eye species (Aves: Zosteropidae: Zosterops) with different<br>origins" (doi:10.1093/zoolinnean/zlz022)
DOI: 10.6084/m9.figshare.7998362.v1
title: An iterative decomposition for asynchronous mixed-model assembly lines: combining balancing, sequencing, and buffer allocation

description: Asynchronous Mixed-Model Assembly lines are common production layouts dedicated to large-scale manufacturing of similar products. Cyclically scheduling such products is an interesting strategy to obtain high and stable throughput. In order to best optimise these lines, it is necessary to combine line balancing, model sequencing, and buffer allocation. However, few works integrate these three degrees of freedom, and evaluating steady-state performance as a consequence of these decisions is challenging. This paper presents a mathematical model that allows an exact steady-state performance evaluation of these lines, and hence their optimisation. While the combination of degrees of freedom is advantageous, it is also computational costly. An iterative decomposition procedure based on alternation between two mathematical models and on optimality cuts is also presented. The decomposition is tested against the proposed mathematical model in a 700-instance dataset. The developed methods obtained 142 optimal answers. Results show that the decomposition outperforms the monolithic mathematical model, in particular for larger and harder instances in terms of solution quality. The optimality cuts are also shown to help the decomposition steps in terms of solution quality and time. Comparisons to a sequential procedure further demonstrate the importance of simultaneously optimising the three degrees of freedom, as both the proposed model and the decomposition outperformed such procedure.
DOI: 10.6084/m9.figshare.12872408.v1
title: Additional file 1 of Brain tumor with an ATXN1-NUTM1 fusion gene expands the histologic spectrum of NUTM1-rearranged neoplasia

description: Additional file 1: Table S1. Results of the Heidelberg DNA methylation-based CNS tumor classifier (entities and scores).
DOI: 10.6084/m9.figshare.12872408
title: Additional file 1 of Brain tumor with an ATXN1-NUTM1 fusion gene expands the histologic spectrum of NUTM1-rearranged neoplasia

description: Additional file 1: Table S1. Results of the Heidelberg DNA methylation-based CNS tumor classifier (entities and scores).
DOI: 10.6084/m9.figshare.12872411
title: Additional file 2 of Brain tumor with an ATXN1-NUTM1 fusion gene expands the histologic spectrum of NUTM1-rearranged neoplasia

description: Additional file 2: Table S2. List of the 517 childhood cancer genes in the dragon targeted gene sequencing panel (Illumina_TruSeq Custom Amplicon).
DOI: 10.6084/m9.figshare.7998353.v1
title: SE_Sulawesi_Zosterops_song

description: A dataset for avian song for Zosterops white-eyes from the islands of South-east Sulawesi, used for the Zoological Journal of the Linnean Society paper: "A sympatric pair of undescribed white-eye species (Aves: Zosteropidae: Zosterops) with different<br>origins" (doi:10.1093/zoolinnean/zlz022)
DOI: 10.6084/m9.figshare.12872411.v1
title: Additional file 2 of Brain tumor with an ATXN1-NUTM1 fusion gene expands the histologic spectrum of NUTM1-rearranged neoplasia

description: Additional file 2: Table S2. List of the 517 childhood cancer genes in the dragon targeted gene sequencing panel (Illumina_TruSeq Custom Amplicon).
DOI: 10.6084/m9.figshare.7998296
title: Supplementary Material for: Histopathologic Features that Predict Transplant Glomerulopathy Progression in a Chinese Cohort

description: <b><i>Background:</i></b> Transplant glomerulopathy (TG) represents a major cause of long-term allograft failure and is the leading cause of overall post-transplant proteinuria. The extent to which histopathologic features predicts prognostication is uncertain. <b><i>Methods:</i></b> A single-center retrospective cohort with biopsy-proven TG was investigated. Renal biopsies were scored according to Banff 2017. The primary outcome was death-censored graft failure defined as return to dialysis or estimated glomerular filtration rate (eGFR) decreased to &lt;15 mL/min/1.73 m<sup>2</sup>. The prognostic significance of clinical and histopathologic parameters was determined using Cox proportional hazards models. <b><i>Results:</i></b> Data from 180 cases were available for analysis with a median follow-up of 5.0 (2.6–8.2) years. In multivariable models, ci + ct score (HR 3.1; 95% CI 2.0–4.9), cg score (HR 1.7; 95% CI 1.1–2.8), eGFR (HR 2.1; 95% CI 1.4–3.2) and proteinuria (HR 2.4; 95% CI 1.6–3.7) were independent predictors of the primary outcome. Mesangial Immunoglobulin A deposition did not significantly affect allograft survival. The only significant pathologic factors for the severity of proteinuria were cg and g + ptc (adjusted <i>R</i><sup>2</sup> = 0.46) as determined by multivariable stepwise linear regression analysis. <b><i>Conclusions:</i></b> Severe ci + ct and cg at biopsy were predictors of unfavorable allograft prognosis in TG patients even after taking into consideration clinical characteristics. Histologic severity of cg and g + ptc was significantly associated with clinical proteinuria.
DOI: 10.6084/m9.figshare.7998299
title: SE_Sulawesi_Zosterops_morphology

description: A dataset for avian morphlogy for Zosterops white-eyes from the islands of South-east Sulawesi, used for the Zoological Journal of the Linnean Society paper: "A sympatric pair of undescribed white-eye species (Aves: Zosteropidae: Zosterops) with different<br>origins" (doi:10.1093/zoolinnean/zlz022)
DOI: 10.6084/m9.figshare.7998299.v1
title: SE_Sulawesi_Zosterops_morphology

description: A dataset for avian morphlogy for Zosterops white-eyes from the islands of South-east Sulawesi, used for the Zoological Journal of the Linnean Society paper: "A sympatric pair of undescribed white-eye species (Aves: Zosteropidae: Zosterops) with different<br>origins" (doi:10.1093/zoolinnean/zlz022)
DOI: 10.6084/m9.figshare.7998266
title: Combining evolutionary computation with the variable neighbourhood search in creating an artificial music composer

description: This paper presents a procedure which composes music pieces through handling four layers in music, namely pitches, rhythms, dynamics, and timber. As an innovative feature, the procedure uses the combination of a genetic algorithm with a synergetic variable neighbourhood search. Uniform and one-point crossover operators as well as two mutation operators conduct the search in the employed genetic algorithm. The key point with these four operators is that the uniform crossover operator and the first mutation operator are indiscriminate, in the sense of using no knowledge of music theory, whereas the employed one-point crossover operator and the second mutation operator are musically informed. Music theory is used for finding the suitability of its generated pieces. The method starts with generating an initial sequence of pitches with a musically informed module and then calculates the suitability of the pitch sequence through the embedded rules. The employed genetic algorithm applies the variable neighbourhood search method to its generated offspring genomes for increasing their quality. Pieces can be composed in major, minor, and harmonic minor scales based on the user’s request. As well as composing the main notes, the procedure generates up to three chord notes associated with each main note and plays the result in a novel multithreading environment through running four threads concurrently.
DOI: 10.6084/m9.figshare.7998266.v1
title: Combining evolutionary computation with the variable neighbourhood search in creating an artificial music composer

description: This paper presents a procedure which composes music pieces through handling four layers in music, namely pitches, rhythms, dynamics, and timber. As an innovative feature, the procedure uses the combination of a genetic algorithm with a synergetic variable neighbourhood search. Uniform and one-point crossover operators as well as two mutation operators conduct the search in the employed genetic algorithm. The key point with these four operators is that the uniform crossover operator and the first mutation operator are indiscriminate, in the sense of using no knowledge of music theory, whereas the employed one-point crossover operator and the second mutation operator are musically informed. Music theory is used for finding the suitability of its generated pieces. The method starts with generating an initial sequence of pitches with a musically informed module and then calculates the suitability of the pitch sequence through the embedded rules. The employed genetic algorithm applies the variable neighbourhood search method to its generated offspring genomes for increasing their quality. Pieces can be composed in major, minor, and harmonic minor scales based on the user’s request. As well as composing the main notes, the procedure generates up to three chord notes associated with each main note and plays the result in a novel multithreading environment through running four threads concurrently.
DOI: 10.6084/m9.figshare.7998227
title: Expression data from human brain samples

description: We downloaded the GSE24265 matrix file from the GEO database and the GPL570 platform.
DOI: 10.6084/m9.figshare.7998230
title: TestDépotResearchGateBIS.pdf

description: this is only a test<br>
DOI: 10.6084/m9.figshare.7998230.v1
title: TestDépotResearchGateBIS.pdf

description: this is only a test<br>
DOI: 10.6084/m9.figshare.7998173
title: Aust Fooptprint

description: Footprint found at Aust Cliff.<br><br>Data includes:<br><br>Photos for photogrammetric reconstructionPhotogrammetric 3D modelCT slice data (cropped from a larger dataset)STL constructed from CT Slice data.Supplemental Figure S1, comparison of CT and photogrammetric data<br>This data is associated with the following publication:N.R. Larkin, et al. The first tetrapod track recorded from the rhaetian in the British Isles. Proc. Geol. Assoc. (2020) https://doi.org/10.1016/j.pgeola.2020.07.012<br>
DOI: 10.6084/m9.figshare.7998083
title: Spirometry reference equations for an adult Middle Eastern population

description: <b>Background</b>: Spirometric reference values are crucial in screening, diagnosis and monitoring the therapeutic course of respiratory diseases. These values from a representative population are key to making a precise interpretation of respiratory diseases. The objective of this study is to determine the spirometric reference values of a healthy Jordanian population. <b>Method</b>: Participants were recruited from Al-Zaytoonah University of Jordan and from several pharmacies, polyclinics and hospitals in different cities in Jordan. To formulate Jordanian-specific spirometric reference values, generalised additive models for location scale and shape (GAMLSS) were used. <b>Results</b>: Spirometric reference values were derived from 1,949 healthy nonsmoking adults (1,061 females) and validated in 300 healthy nonsmoking subjects (150 females). <b>Conclusion</b>: Spirometric reference values were developed for a Middle Eastern adult population.
DOI: 10.6084/m9.figshare.7998083.v1
title: Spirometry reference equations for an adult Middle Eastern population

description: <b>Background</b>: Spirometric reference values are crucial in screening, diagnosis and monitoring the therapeutic course of respiratory diseases. These values from a representative population are key to making a precise interpretation of respiratory diseases. The objective of this study is to determine the spirometric reference values of a healthy Jordanian population. <b>Method</b>: Participants were recruited from Al-Zaytoonah University of Jordan and from several pharmacies, polyclinics and hospitals in different cities in Jordan. To formulate Jordanian-specific spirometric reference values, generalised additive models for location scale and shape (GAMLSS) were used. <b>Results</b>: Spirometric reference values were derived from 1,949 healthy nonsmoking adults (1,061 females) and validated in 300 healthy nonsmoking subjects (150 females). <b>Conclusion</b>: Spirometric reference values were developed for a Middle Eastern adult population.
DOI: 10.6084/m9.figshare.7998053
title: GSE24265_series_matrix.txt.gz

description: 来自4名死者患者的脑样本包括在微阵列研究中，该患者在前4天内具有幕上脑内出血。该研究组包括2名女性和2名男性，中位年龄为79岁（68-92岁）。在尸检和肉眼检查期间，经验丰富的神经病理学家使用最新的神经放射学图像鉴定怀疑出现水肿的血肿周围区域。来自血肿周围区域（PH），对侧灰质（CG）和对侧白质（CW）的样本在死亡后的前5小时内获得，并在液氮中快速冷冻并储存在-80℃直至RNA分离。
DOI: 10.6084/m9.figshare.7997465
title: Additional file 6: of Development and characterisation of acquired radioresistant breast cancer cell lines

description: Table S3. Gene lists from a published EMT signature [23] and WNT signalling associated genes [25] applied to our gene expression data. (XLS 62 kb)
DOI: 10.6084/m9.figshare.7997453
title: Additional file 2: of Development and characterisation of acquired radioresistant breast cancer cell lines

description: Table S2. Overview of samples (cell line, treatments, time points, replicates) used in each experiment or analysis. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7997465.v1
title: Additional file 6: of Development and characterisation of acquired radioresistant breast cancer cell lines

description: Table S3. Gene lists from a published EMT signature [23] and WNT signalling associated genes [25] applied to our gene expression data. (XLS 62 kb)
DOI: 10.6084/m9.figshare.7997447
title: Additional file 1: of Development and characterisation of acquired radioresistant breast cancer cell lines

description: Table S1. RIN values for all samples used in gene expression analysis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7997447.v1
title: Additional file 1: of Development and characterisation of acquired radioresistant breast cancer cell lines

description: Table S1. RIN values for all samples used in gene expression analysis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7997453.v1
title: Additional file 2: of Development and characterisation of acquired radioresistant breast cancer cell lines

description: Table S2. Overview of samples (cell line, treatments, time points, replicates) used in each experiment or analysis. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.12872495
title: Additional file 2 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 2. R code to compare BUGSnet with GeMTC for the analysis of the diabetes data.
DOI: 10.6084/m9.figshare.7997435
title: MOESM2 of Temporal variations in discharge rate and component characteristics of tephra-fall deposits during the 2014â 2015 eruption of Nakadake first crater, Aso Volcano, Japan

description: Additional file 2. Mass of tephra discharged and isomass area for each sampling period during the November 2014â May 2015 activity of Nakadake first crater.
DOI: 10.6084/m9.figshare.12872504
title: Additional file 4 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 4. BUGSnet league table obtained from the R code in Additional file 2.
DOI: 10.6084/m9.figshare.12872501
title: Additional file 3 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 3. Diabetes dataset to accompany the R code in Additional file 2.
DOI: 10.6084/m9.figshare.7997429
title: Additional file 3: of A cmap-enabled gene expression signature-matching approach identifies small-molecule inducers of accelerated cell senescence

description: Differentially expressed genes in interferon signaling pathway in IR-induced senescence. (XLS 28 kb)
DOI: 10.6084/m9.figshare.7997435.v1
title: MOESM2 of Temporal variations in discharge rate and component characteristics of tephra-fall deposits during the 2014â 2015 eruption of Nakadake first crater, Aso Volcano, Japan

description: Additional file 2. Mass of tephra discharged and isomass area for each sampling period during the November 2014â May 2015 activity of Nakadake first crater.
DOI: 10.6084/m9.figshare.12872492.v1
title: Additional file 1 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 1. Vignette on network meta-analysis of survival data. A vignette detailing how to obtain the outputs in the Results section using BUGSnet version 1.0.2. The vignette includes all the necessary R code as well as additional outputs and explanations that were not presented in this manuscript for the sake of brevity.
DOI: 10.6084/m9.figshare.12872498
title: Additional file of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses
DOI: 10.6084/m9.figshare.12872507
title: Additional file 5 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 5. GeMTC league table obtained from the R code in Additional file 2.
DOI: 10.6084/m9.figshare.12872492
title: Additional file 1 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 1. Vignette on network meta-analysis of survival data. A vignette detailing how to obtain the outputs in the Results section using BUGSnet version 1.0.2. The vignette includes all the necessary R code as well as additional outputs and explanations that were not presented in this manuscript for the sake of brevity.
DOI: 10.6084/m9.figshare.12872498.v2
title: Additional file of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses
DOI: 10.6084/m9.figshare.12872507.v1
title: Additional file 5 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 5. GeMTC league table obtained from the R code in Additional file 2.
DOI: 10.6084/m9.figshare.7997423
title: Additional file 2: of A cmap-enabled gene expression signature-matching approach identifies small-molecule inducers of accelerated cell senescence

description: The differentially expressed genes shared between IR- and p21-induced senescence. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.12872504.v1
title: Additional file 4 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 4. BUGSnet league table obtained from the R code in Additional file 2.
DOI: 10.6084/m9.figshare.7997429.v1
title: Additional file 3: of A cmap-enabled gene expression signature-matching approach identifies small-molecule inducers of accelerated cell senescence

description: Differentially expressed genes in interferon signaling pathway in IR-induced senescence. (XLS 28 kb)
DOI: 10.6084/m9.figshare.12872495.v1
title: Additional file 2 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 2. R code to compare BUGSnet with GeMTC for the analysis of the diabetes data.
DOI: 10.6084/m9.figshare.12872501.v1
title: Additional file 3 of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file 3. Diabetes dataset to accompany the R code in Additional file 2.
DOI: 10.6084/m9.figshare.7997423.v1
title: Additional file 2: of A cmap-enabled gene expression signature-matching approach identifies small-molecule inducers of accelerated cell senescence

description: The differentially expressed genes shared between IR- and p21-induced senescence. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.12872498.v1
title: Additional file of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses

description: Additional file of BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses
DOI: 10.6084/m9.figshare.7997405
title: Additional file 6: of Genes CEP55, FOXD3, FOXF2, GNAO1, GRIA4, and KCNA5 as potential diagnostic biomarkers in colorectal cancer

description: Table S6. Literature mining analysis for differentially expressed genes from our study. (XLSX 10 kb)