cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23728/b2share.3315a97331b74d7c896a887bfa9a1bde
title: Cervical screening by human papillomavirus genotype: a population-based study in Sweden

description: Background Cervical screening programs use testing for Human Papillomavirus (HPV) genotypes. Different HPV types differ greatly in prevalence and oncogenicity. We estimated the impact of cervical screening and follow-up for each HPV type. Methods and findings For each type of HPV, we calculated the number of women needed to screen (NNS) and number of women needing follow-up (NNF) to detect or prevent one cervical cancer case, using the following individual level input data i) screening and cancer data for all women aged 25-80 years, resident in Sweden during 2004-2011(N=3,568,938); ii) HPV type-specific prevalences and screening histories among women with cervical cancer in Sweden in 2002-2011(N=4,254); iii) HPV 16/18/Other HPV prevalences in the population-based HPV screening program (N=656,607); and iv) exact HPV genotyping in a population-based cohort (n=12,527). Historical screening attendance was associated with a 72% reduction of cervical cancer incidence caused by HPV16 (71.6%, 95%CI [69.1%, 73.9%]) and a 54% reduction of cancer caused by HPV18 (53.8%, 95%CI [40.6%, 63.1%]). One case of HPV16-caused cervical cancer could be prevented for every 5,527 women attending screening (number needed to screen, NNS). Prevention of one case of HPV16-caused cervical cancer required follow-up of 147 HPV16-positive women (Number needed to follow-up, NNF). The NNS and NNF were up to 40-500 times higher for HPV types commonly screened for with lower oncogenic potential (HPV35,39,51,56,59,66,68). For women below 30 years of age, NNS and NNF for HPV16 were 4,747 and 289, respectively, but &gt;220,000 and &gt;16,000 for HPV35,39,51,56,59,66,68. All estimates were either age-standarized or age-stratified. NNS is dependent on the HPV prevalence that can differ between populations and over time. However, it can readily be recalculated in other settings and monitored when HPV-type specific prevalence changes. The main limitations includes using assumptions to integrate data over time and ages, and very few cervical cancer cases associated with certain HPV types in young age group. Conclusions In this study, we observed that the impact of cervical cancer screening varies depending on the HPV type screened for. Estimating and monitoring the impact of screening by HPV type can facilitate the design of effective and efficient HPV-based cervical screening programs.
DOI: 10.5281/zenodo.8285030
title: Training data for Spheroid nucleus for Oneat action classification

description: Contains the npz files to train 4D oneat network for classification of spheroid nuclei into Normal, Mitosis and Apoptosis cell types. In conjunction with the BLVKW repository this data contains patches of TZYX (3,8,64,64) that is then used to train the oneat network. Statistics Statistics Normal Mitosis Apoptosis 7672 1680 357 Aug = Augmentation using Poisson and Gaussian noise and flip XY transformation. The training data image size = (9709,3,8,64,64,1) The training data label size = (9709,3,11,1) Script: https://github.com/kapoorlab/BLVKW/blob/main/minus_06_create_oneat_patches.py
description: Computational support provided by Jean Zay dynamic access grants : AD011013724R1, AD011013695R1, AD011013695R1, AD011013396R1, AD011013396R1
DOI: 10.5281/zenodo.8285029
title: Training data for Spheroid nucleus for Oneat action classification

description: Contains the npz files to train 4D oneat network for classification of spheroid nuclei into Normal, Mitosis and Apoptosis cell types. In conjunction with the BLVKW repository this data contains patches of TZYX (3,8,64,64) that is then used to train the oneat network. Statistics Statistics Normal Mitosis Apoptosis 7672 1680 357 Aug = Augmentation using Poisson and Gaussian noise and flip XY transformation. The training data image size = (9709,3,8,64,64,1) The training data label size = (9709,3,11,1) Script: https://github.com/kapoorlab/BLVKW/blob/main/minus_06_create_oneat_patches.py
description: Computational support provided by Jean Zay dynamic access grants : AD011013724R1, AD011013695R1, AD011013695R1, AD011013396R1, AD011013396R1
DOI: 10.6084/m9.figshare.3761562.v2711
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.8292769
title: Partial Data set for Karan et al 2023 (DOIs: 10.1016/j.advwatres.2023.104521 and 10.1103/PhysRevFluids.8.084502)

description: This is the simulation and theory dataset for the research articles "Impact of hydrodynamic dispersion on mixing-induced reactions under radial flows P Karan, U Ghosh, Y Méheust, T Le Borgne - Advances in Water Resources, 2023" and "Effect of hydrodynamic dispersion on spherical reaction front dynamics in porous media P Karan, U Ghosh, F Brau, Y Méheust, T Le Borgne - Physical Review Fluids, 2023" Remaining Data Available in the Repositories: 10.5281/zenodo.8353640, 10.5281/zenodo.8353673, 10.5281/zenodo.8353679
DOI: 10.5281/zenodo.8292768
title: Partial Data set for Karan et al 2023 (DOIs: 10.1016/j.advwatres.2023.104521 and 10.1103/PhysRevFluids.8.084502)

description: This is the simulation and theory dataset for the research articles "Impact of hydrodynamic dispersion on mixing-induced reactions under radial flows P Karan, U Ghosh, Y Méheust, T Le Borgne - Advances in Water Resources, 2023" and "Effect of hydrodynamic dispersion on spherical reaction front dynamics in porous media P Karan, U Ghosh, F Brau, Y Méheust, T Le Borgne - Physical Review Fluids, 2023" Remaining Data Available in the Repositories: 10.5281/zenodo.8353640, 10.5281/zenodo.8353673, 10.5281/zenodo.8353679
DOI: 10.5281/zenodo.7486374
title: Ecosystem services, nature preferences, and valuation of urban green and blue spaces - Pre-publication data

description: Data used in the analysis for the manuscript: "Ecosystem services, nature preferences, and valuation of urban green and blue spaces". The data was collected in a web-based survey of Tel Aviv-Yafo, Israel residents between March 21, 2021 and May 5, 2021.
DOI: 10.5281/zenodo.8353671
title: Ecosystem services, nature preferences, and valuation of urban green and blue spaces - Pre-publication data

description: Data used in the analysis for the manuscript: "Ecosystem services, nature preferences, and valuation of urban green and blue spaces". The data was collected in a web-based survey of Tel Aviv-Yafo, Israel residents between March 21, 2021 and May 5, 2021.
DOI: 10.5519/qd.qk2p1nly
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (308 records)
DOI: 10.5281/zenodo.8353281
title: Image data for: Microrheology of the liquid-solid transition during gelation

description: This data set contains fluorescence microscopy images for the microrheology experiments reported in T. H. Larsen and E. M. Furst, “Microrheology of the liquid-solid transition during gelation,” Phys. Rev. Lett. 100, 146001 (2008). File descriptions: pa.tar.gz - data for polyacrylamide gels. Polyacrylamide monomer, bis-acrylamide cross-linker, TEMED catalyst, and ammonium persulfate initiator. Stock solutions are made and degassed prior to use. Samples are prepared at 3.0 wt % total acrylamide, including up to 0.1 wt % bis-acrylamide, 0.5 wt % ammonium persulfate, and 0.1% TEMED. Uncompressed size: 29GB peptide.tar.gz - data for a peptide hydrogelator. The final sample contains 0.15 wt % peptide in pH 8.5 buffer (50 mM BTP). Uncompressed size: 27GB Fluorescent polystyrene microspheres with diameter 1µm serve as tracer particles in both samples. They have a final concentration of 0.15 v % before gelation is initiated. See Larsen and Furst (2008) for further details. Each compressed tar file expands into individual folders corresponding to the data time point or composition. The folders contain 800 uncompressed TIFF files (2MB / image). Images are taken at 30 frames per second with a 1 millisecond exposure. The conversion for pixels to micrometers is 40.6 pixels / 10 µm. This work is marked with CC0 1.0 Universal. To view a copy of this license, visit http://creativecommons.org/publicdomain/zero/1.0
description: Funding for this work was provided by the National Institutes of Health (No. 1 R01 EB003172-01 and No. 2 P20 016472-04) and the Procter and Gamble Company.
DOI: 10.5281/zenodo.8353280
title: Image data for: Microrheology of the liquid-solid transition during gelation

description: This data set contains fluorescence microscopy images for the microrheology experiments reported in T. H. Larsen and E. M. Furst, “Microrheology of the liquid-solid transition during gelation,” Phys. Rev. Lett. 100, 146001 (2008). File descriptions: pa.tar.gz - data for polyacrylamide gels. Polyacrylamide monomer, bis-acrylamide cross-linker, TEMED catalyst, and ammonium persulfate initiator. Stock solutions are made and degassed prior to use. Samples are prepared at 3.0 wt % total acrylamide, including up to 0.1 wt % bis-acrylamide, 0.5 wt % ammonium persulfate, and 0.1% TEMED. Uncompressed size: 29GB peptide.tar.gz - data for a peptide hydrogelator. The final sample contains 0.15 wt % peptide in pH 8.5 buffer (50 mM BTP). Uncompressed size: 27GB Fluorescent polystyrene microspheres with diameter 1µm serve as tracer particles in both samples. They have a final concentration of 0.15 v % before gelation is initiated. See Larsen and Furst (2008) for further details. Each compressed tar file expands into individual folders corresponding to the data time point or composition. The folders contain 800 uncompressed TIFF files (2MB / image). Images are taken at 30 frames per second with a 1 millisecond exposure. The conversion for pixels to micrometers is 40.6 pixels / 10 µm. This work is marked with CC0 1.0 Universal. To view a copy of this license, visit http://creativecommons.org/publicdomain/zero/1.0
description: Funding for this work was provided by the National Institutes of Health (No. 1 R01 EB003172-01 and No. 2 P20 016472-04) and the Procter and Gamble Company.
DOI: 10.25919/yfne-ra32
title: Parkes observations for project P1171 semester 2023APRS_11

description: The origin of Fast Radio Bursts (FRBs) is still unclear with a plethora of theoretical models for their origin. Several models predict associated multi-wavelength emission, but previous searches for optical, X-ray or gamma-ray counterparts of FRBs have not led to any detection. The Galactic magnetar SGR 1935+2154A has been observed to simultaneously emit FRB-like bursts and X-ray flares, which suggests that also extragalactic FRB sources may exhibit X-ray counterparts. Because of the high cost of X-ray satellites and in face of the relatively low FRB detection probability in their small field of view, coordinated radio and X-ray observations are logistically very difficult to set up. We propose a new approach using the X-ray satellite XMM-Newton and the Parkes/Murriyang radio telescope to put constraints on the theoretical models: We aim to conduct shadowing observations with the Parkes telescope to search for new FRBs in fields that are simultaneously covered by XMM-Newton. We hereby target regular XMM observations of nearby (low-z) galaxies, to increase our detection chances of possibly associated X-ray emission. In case of an FRB detection in the radio band, we will have guaranteed simultaneous X-ray coverage and will get detailed information about the associated X-ray spectrum and light curve since all XMM-Newton data will become public a year after the observation.
DOI: 10.25919/2xfz-pz58
title: Parkes observations for project P1041 semester 2023APRS_05

description: We propose to continue our long-term timing campaign of millisecond pulsars (MSPs) discovered in the Globular Cluster Omega Centauri. So far, we have discovered seven MSPs and obtained coherent timing solutions for five of them. Monthly observations with the Parkes Ultra-Wideband Low (UWL) receiver system are requested to time known pulsars and search for new pulsars. With a timing baseline of ~3.5 yr we are able to measure the derivative of the spin frequency for the first five pulsars. Upper limits on the pulsar line-of-sight acceleration are estimated and compared with predictions based on analytical models of the cluster. The linearly polarised emission from PSR J1326-4728 yields a rotation measure of -18(8) rad/m^2. Long-term timing observations of these MSPs will provide us a new way to (1) study the dynamics of the core and constrain the existence of any intermediate-mass black holes; (2) reveal the origin of Gamma-ray emission from the core and put stringent constraints on dark matter parameters; (3) study Galactic ionised medium and magnetic fields on parsec scales.
DOI: 10.6084/m9.figshare.24153330
title: Data for Detection of Sinus Membrane Lift and Perforation

description: This contains the raw data for the study with the responses from the examiners, the graphs and the statistical analyses performed using the software SPSS 27.0 (IBM) and AgreeStat360 (Advanced Analytics) along with the graphs.
DOI: 10.6084/m9.figshare.24153330.v1
title: Data for Detection of Sinus Membrane Lift and Perforation

description: This contains the raw data for the study with the responses from the examiners, the graphs and the statistical analyses performed using the software SPSS 27.0 (IBM) and AgreeStat360 (Advanced Analytics) along with the graphs.
DOI: 10.5281/zenodo.8353771
title: Association between a glucagon-like peptide 1 receptor genetic polymorphism and therapeutic response to sitagliptin in a sample of type 2 diabetic patients: an observational study

description: Association between a glucagon-like peptide 1 receptor genetic polymorphism and therapeutic response to sitagliptin in a sample of type 2 diabetic patients: an observational study
DOI: 10.5281/zenodo.8353770
title: Association between a glucagon-like peptide 1 receptor genetic polymorphism and therapeutic response to sitagliptin in a sample of type 2 diabetic patients: an observational study

description: Association between a glucagon-like peptide 1 receptor genetic polymorphism and therapeutic response to sitagliptin in a sample of type 2 diabetic patients: an observational study
DOI: 10.25952/vfhc-c237
title: A System for Driving Innovation Enhanced Business Models in the Indonesian Smallholder Cattle Value Chain-Dataset

description: The dataset consists of a survey of smallholder beef producers was conducted in two districts of the Indonesian island of Sumbawa in Nusa Tenggara Barat Province. Data collected included: households’ production and marketing systems and performance; indicators of innovations; and intentions about implementing innovations
description: The dataset consists of a survey of smallholder beef producers was conducted in two districts of the Indonesian island of Sumbawa in Nusa Tenggara Barat Province. Data collected included: households’ production and marketing systems and performance; indicators of innovations; and intentions about implementing innovations
DOI: 10.25345/c5gt5fr7n
title: MassIVE MSV000092882 - Global proteomics insights for a novel small compound targeting the non-integrin Laminin Receptor in a macrophage cell model
title: Monocytes and macrophages are the first barrier of the innate immune system, which interact with agents causing osteoarthritis or other conditions, leading to the release of proinflammatory mediators that exacerbate inflammation. The aim of this study was to investigate the proteomic changes in THP-1 monocytes differentiated to macrophages, pre- or -post small compound treatments and in the presence or absence of a proinflammatory stimulus, Lipopolysaccharide (LPS). This study aimed to discover and isolate small compounds that mimic the interaction between Pigment derived growth factor (PEDF) and its 37/67kDa Laminin receptor (LR) with potential anti-inflammatory activity. Our results suggested that novel compounds targeting the LR-PEDF interface can be useful for modulating anti-inflammatory effects. Several compounds were selected based on in silico docking at the PEDF/LR interface and examined for their ability to reduce IL1B expression in a macrophage cell model. Compound C3 showed the highest efficacy in reducing IL1B expression in the presence of LPS proinflammatory stimulus. Proteomics analysis revealed that C3 treatment altered the global proteomic profile of THP-1 activated macrophages, affecting pathways such as MYC targets, oxidative phosphorylation, and mTORC1 signaling. The analysis also highlighted the involvement of key regulators, including RPSA and MYC, and their interactions with other proteins such as ribosome proteins and cell cycle regulators. Furthermore, the downregulated proteome analysis revealed shared and unique pathways affected by the treatments, including processes related to actin cytoskeleton, translation, and inflammatory response. Protein-protein interaction networks suggested the potential involvement of transcription factors like MYC and the interconnectedness of signaling pathways in mediating the effects of the treatments. Overall, these findings provide valuable insights into the potential anti-inflammatory activity and underlying mechanisms of compound C3, emphasizing its relevance for further investigation in the context of inflammatory conditions.
DOI: 10.34740/kaggle/dsv/6490308
title: Global Crypto Currency Price Database
DOI: 10.57841/casdc.0002337
title: 量子点发光效率、LSC光学效率测试数据集
DOI: 10.34740/kaggle/dsv/6490351
title: BBC News
DOI: 10.34740/kaggle/dsv/6490352
title: Polish-Ukrainian translations from Tatoeba
DOI: 10.6084/m9.figshare.24069735
title: Taylor, et al. Supplementary Files

description: Supplementary files for Taylor et al. 2023
DOI: 10.34740/kaggle/dsv/6490373
title: Youtube Trending Video - Taiwan & Hong Kong
DOI: 10.57841/casdc.0002338
title: 质子交换膜燃料电池酯化纳米纤维电极数据
DOI: 10.57841/casdc.0002339
title: 解耦链条炉模拟数据集
DOI: 10.57841/casdc.0002340
title: 解耦燃烧炉照片数据集
DOI: 10.57841/casdc.0002341
title: 非光气异氰酸酯（MDI）产品精细化开发数据集
DOI: 10.57841/casdc.0002342
title: 煤基非光气异氰酸酯MDI清洁合成全过程系统集成优化与10万吨级工艺包编制数据集
DOI: 10.57841/casdc.0002343
title: 不同分散介质的质子交换膜燃料电池催化层数据
DOI: 10.57841/casdc.0002344
title: 质子交换膜燃料电池金属双极板NbC α-C H涂层数据
DOI: 10.57841/casdc.0002345
title: 质子交换膜燃料电池S形流场数据
DOI: 10.57841/casdc.0002346
title: 质子交换膜燃料电池催化剂浆料数据
DOI: 10.57841/casdc.0002347
title: 低温下大面积质子交换膜燃料电池数据
DOI: 10.6084/m9.figshare.24153531
title: <b>On the Acceleration Mechanism of Ultra-Relativistic Electrons in September and October 2017</b>

description: This dataset includes PSD data converted by flux data from REPT instrument onboard RBSP-A and RBSP-B. L*, u, and K calculated by TS04, T89, and TS01 also are provided.
DOI: 10.6084/m9.figshare.24153531.v1
title: <b>On the Acceleration Mechanism of Ultra-Relativistic Electrons in September and October 2017</b>

description: This dataset includes PSD data converted by flux data from REPT instrument onboard RBSP-A and RBSP-B. L*, u, and K calculated by TS04, T89, and TS01 also are provided.
DOI: 10.18112/openneuro.ds004767.v1.0.0
title: Characterizing medial temporal lobe vulnerability to neurofibrillary tangle pathology in Alzheimer’s disease using a 3-D ex vivo MRI atlas and serial histology
DOI: 10.18112/openneuro.ds003052.v2.0.1
title: Characterizing medial temporal lobe vulnerability to neurofibrillary tangle pathology in Alzheimer’s disease using a 3-D ex vivo MRI atlas and serial histology
DOI: 10.25952/mhbe-sz13
title: The Economic Impacts of Food Loss and Food Waste in the Australian Apple Industry

description: This data set is pertaining to the thesis, "The Economic Impacts of Food Loss and Food Waste in the Australian Apple Industry: An Equilibrium Displacement Model Approach". The Dataset includes documents which analyse the secondary data from ABS, Hort Innovation and Harvest to Home. The price and quantities of apples over the years specified are included to depict the Australian Apple value chain. Also included are the equations used in the Equilibrium Displacement Model (EDM) and the resulting surplus changes and outcomes.<br>
In addition, there are notes included from the Bonn University visit in 2019 from apple producers and researchers. Also included are notes from anonymous industry participants.
description: This data set is pertaining to the thesis, "The Economic Impacts of Food Loss and Food Waste in the Australian Apple Industry: An Equilibrium Displacement Model Approach". The Dataset includes documents which analyse the secondary data from ABS, Hort Innovation and Harvest to Home. The price and quantities of apples over the years specified are included to depict the Australian Apple value chain. Also included are the equations used in the Equilibrium Displacement Model (EDM) and the resulting surplus changes and outcomes.<br>
In addition, there are notes included from the Bonn University visit in 2019 from apple producers and researchers. Also included are notes from anonymous industry participants.
DOI: 10.6084/m9.figshare.24080391
title: Datasets and code of vulnerability analysis for urban street networks

description: The code is used for measuring the vulnerability of urban street networks based on large-scale region segmentation. Corresponding paper entitiled "<b>Vulnerability analysis of urban street networks: A large-scale region segmentation approach</b>" has been submitted to IJGIS.
DOI: 10.6084/m9.figshare.24080391.v1
title: Datasets and code of vulnerability analysis for urban street networks

description: The code is used for measuring the vulnerability of urban street networks based on large-scale region segmentation. Corresponding paper entitiled "<b>Vulnerability analysis of urban street networks: A large-scale region segmentation approach</b>" has been submitted to IJGIS.
DOI: 10.5281/zenodo.8353657
title: Clinical subtyping of cancer from plasma based on comprehensive epigenomic profiling

description: <em><strong>Fragment bed files part 1.</strong></em> While circulating tumor DNA (ctDNA) assays are increasingly used to inform clinical decisions in cancer care, they have limited ability to identify the transcriptional programs that govern cancer phenotypes and their dynamic changes during the course of disease. To address these limitations, we developed a method for comprehensive epigenomic profiling of cancer from 1mL of patient plasma. Using an immunoprecipitation-based approach targeting histone modifications and DNA methylation, we measured 1,268 epigenomic profiles in plasma from 433 individuals with one of 15 cancers. Our assay provided a robust proxy for transcriptional activity, allowing us to infer the expression levels of diagnostic markers and drug targets, measure the activity of therapeutically targetable transcription factors, and detect epigenetic mechanisms of resistance. This proof-of-concept study in advanced cancers shows how plasma epigenomic profiling could unlock clinically actionable information that is currently accessible only via direct tissue sampling.
description: Fragment bed files part 1.