cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dhtcdg
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Banksia blechnifolia F.Muell.",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 49 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041772-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.101563
title: KELLIA_nb_1965_06734

description: Référence : nb_1965_06734<br />Site : Kellia / Quşūr al-Ruba‘yyāt<br />Secteur : Appartement sud-ouest (QR_219); QR_219<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.101562
title: KELLIA_nb_1965_06733

description: Référence : nb_1965_06733<br />Site : Kellia / Quşūr al-Ruba‘yyāt<br />Secteur : Appartement sud-ouest (QR_219); QR_219<br />Type : photographie<br />
DOI: 10.15468/dl.cqkqh6
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia wenshanensis C.M.Hu"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234269-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.101561
title: KELLIA_nb_1965_06732

description: Référence : nb_1965_06732<br />Site : Kellia / Quşūr al-Ruba‘yyāt<br />Secteur : Appartement sud-ouest (QR_219); QR_219<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.101560
title: KELLIA_nb_1965_06731

description: Référence : nb_1965_06731<br />Site : Kellia / Quşūr al-Ruba‘yyāt<br />Secteur : Appartement sud-ouest (QR_219); QR_219<br />Type : photographie<br />
DOI: 10.15468/dl.txgjec
title: Occurrence Download

description: A dataset containing 2515 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rudgea viburnoides (Cham.) Benth."
 ]
}

 The dataset includes 2515 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106548-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.101559
title: KELLIA_nb_1965_06730

description: Référence : nb_1965_06730<br />Site : Kellia / Quşūr al-Ruba‘yyāt<br />Secteur : Extérieurs de l'enceinte (QR_219); QR_219<br />Type : photographie<br />
DOI: 10.15468/dl.ykdt6l
title: Occurrence Download

description: A dataset containing 14006 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Ageratum conyzoides Hieron.",
 "TaxonKey is Ageratum conyzoides Sieber ex Steud.",
 "TaxonKey is Ageratum conyzoides L.",
 "TaxonKey is Ageratum conyzoides Sieber ex Sieber",
 "TaxonKey is Ageratum conyzoides f. album (Willd.) B.L.Rob., 1913",
 "TaxonKey is Ageratum conyzoides subsp. houstonianum (Mill.) M.Sharma",
 "TaxonKey is Ageratum conyzoides var. houstonianum (Mill.) Sahu",
 "TaxonKey is Ageratum conyzoides var. hirtum (Lam.) DC.",
 "TaxonKey is Ageratum conyzoides f. obtusifolia (Lam.) Miq., 1856",
 "TaxonKey is Ageratum conyzoides var. mexicanum (Sims) DC."
 ]
}

 The dataset includes 14006 records from 325 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001343-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.101558
title: KELLIA_nb_1965_06729

description: Référence : nb_1965_06729<br />Site : Kellia / Quşūr al-Ruba‘yyāt<br />Secteur : Extérieurs de l'enceinte (QR_219); QR_219<br />Type : photographie<br />
DOI: 10.15468/dl.3jg6xe
title: Occurrence Download

description: A dataset containing 242826 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Glyceria fluitans (L.) R.Br."
 ]
}

 The dataset includes 242826 records from 521 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106546-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvjjqy
title: Occurrence Download

description: A dataset containing 10184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lithobates Fitzinger, 1843",
 "Geometry POLYGON((-107.68 14.03,-107.68 22.35,-93.90 22.35,-93.90 14.03,-107.68 14.03))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10184 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052047-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbfaaz
title: Occurrence Download

description: A dataset containing 17419 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tadarida brasiliensis (I.Geoffroy, 1824)"
 ]
}

 The dataset includes 17419 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133077-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwwfgf
title: Occurrence Download

description: A dataset containing 43622 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala comosa Schkuhr"
 ]
}

 The dataset includes 43622 records from 394 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026925-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gvb32t
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maxillaria pseudonubigena J.T.Atwood"
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171748-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2xfswn
title: Occurrence Download

description: A dataset containing 42590 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Barbados"
 ]
}

 The dataset includes 42590 records from 243 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052051-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ypr8r
title: Occurrence Download

description: A dataset containing 13461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1970-2000",
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Oryza glaberrima Steud.",
 "TaxonKey is Eleusine coracana (L.) Gaertn.",
 "TaxonKey is Echinochloa colona (L.) Link",
 "TaxonKey is Digitaria iburua Stapf",
 "TaxonKey is Digitaria longiflora (Retz.) Pers."
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13461 records from 226 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007328-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vekzxg
title: Occurrence Download

description: A dataset containing 139017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Quercus rubra L.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Geometry POLYGON ((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 139017 records from 803 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023123-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive103685.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103686.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103687.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103688.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103689.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103690.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103691.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103692.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103693.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103694.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103695.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103696.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103697.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103698.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103699.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103700.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103701.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103702.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103703.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103704.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.hcnzft
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leuresthes sardina (Jenkins & Evermann, 1889)"
 ]
}

 The dataset includes 161 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060040-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive103705.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103706.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103707.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103708.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103709.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103710.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103711.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103712.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103713.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103714.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103715.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103716.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103717.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.9v4zrw
title: Occurrence Download

description: A dataset containing 103272637 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 103272637 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060018-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive103718.20240510.9
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.12642704
title: Identification and Characterization of the Novel Post-Translational Modification Cysteine S-Acetylation

description: Protein modifications modulate nearly every aspect of cell biology in organisms ranging from Archaea to Eukaryotes. The earliest evidence of covalent protein modifications was found in the early 20th century by studying the amino acid composition of proteins by chemical hydrolysis. These discoveries challenged what defined a canonical amino acid. The advent and rapid adoption of mass spectrometry-based proteomics in the latter part of the 20th century enabled a veritable explosion in the number of known protein modifications, with over 500 discrete modifications counted today. Now, new computational tools in data science, machine learning, and artificial intelligence are poised to allow researchers to make significant progress discovering new protein modifications and determining their function. 

Lysine acetylation is one of the most well-known post translational modifications. Acetylation is not limited to lysine with acetylation of serine and threonine having also been reported in the literature. Lysine acetylation is known to occur both enzymatically and non-enzymatically.  Cysteine is a reactive amino acid central to the catalytic activities of many enzymes. Given the highly reactive nature of the cysteine side-chain, non-enzymatic acetylation of cysteine would be expected to be more favorable than non-enzymatic acetylation of lysine.    Cysteine is also a common target of post-translational modifications (PTMs), such as palmitoylation. This long-chain acyl PTM can modify cysteine residues and induce changes in protein sub-cellular localization.  Transfer of an acetyl moiety from the side-chain of cysteine to the side-chain of lysine has been shown in vitro.  Cysteine side-chain acetylation has never been shown in vivo.  We hypothesized that cysteine could also be modified by short-chain acyl groups, such as cysteine S-acetylation. To test this, we developed sample preparation and non-targeted mass spectrometry protocols to analyze the mouse liver proteome for cysteine acetylation. Our findings revealed hundreds of sites of cysteine acetylation across multiple tissue types, revealing a previously uncharacterized cysteine acetylome. The cysteine acetylome shows distinct patterns in different sub-cellular compartments and is most abundant in the cytoplasm. Cysteine acetylation is present in all tissue types tested and has tissue-specific acetylome patterns.   Metabolic stress led to targeted changes in the cysteine acetylome of BAT.  Acetylation of the active site cysteines of GAPDH led to a sharp reduction in activity. This study uncovers a novel aspect of cysteine biochemistry, highlighting short-chain modifications alongside known long-chain acyl PTMs. These findings enrich our understanding of the landscape of acyl modifications and suggest new research directions in enzyme activity regulation and cellular signaling in metabolism.
DOI: 10.5281/zenodo.12642705
title: Identification and Characterization of the Novel Post-Translational Modification Cysteine S-Acetylation

description: Protein modifications modulate nearly every aspect of cell biology in organisms ranging from Archaea to Eukaryotes. The earliest evidence of covalent protein modifications was found in the early 20th century by studying the amino acid composition of proteins by chemical hydrolysis. These discoveries challenged what defined a canonical amino acid. The advent and rapid adoption of mass spectrometry-based proteomics in the latter part of the 20th century enabled a veritable explosion in the number of known protein modifications, with over 500 discrete modifications counted today. Now, new computational tools in data science, machine learning, and artificial intelligence are poised to allow researchers to make significant progress discovering new protein modifications and determining their function. 

Lysine acetylation is one of the most well-known post translational modifications. Acetylation is not limited to lysine with acetylation of serine and threonine having also been reported in the literature. Lysine acetylation is known to occur both enzymatically and non-enzymatically.  Cysteine is a reactive amino acid central to the catalytic activities of many enzymes. Given the highly reactive nature of the cysteine side-chain, non-enzymatic acetylation of cysteine would be expected to be more favorable than non-enzymatic acetylation of lysine.    Cysteine is also a common target of post-translational modifications (PTMs), such as palmitoylation. This long-chain acyl PTM can modify cysteine residues and induce changes in protein sub-cellular localization.  Transfer of an acetyl moiety from the side-chain of cysteine to the side-chain of lysine has been shown in vitro.  Cysteine side-chain acetylation has never been shown in vivo.  We hypothesized that cysteine could also be modified by short-chain acyl groups, such as cysteine S-acetylation. To test this, we developed sample preparation and non-targeted mass spectrometry protocols to analyze the mouse liver proteome for cysteine acetylation. Our findings revealed hundreds of sites of cysteine acetylation across multiple tissue types, revealing a previously uncharacterized cysteine acetylome. The cysteine acetylome shows distinct patterns in different sub-cellular compartments and is most abundant in the cytoplasm. Cysteine acetylation is present in all tissue types tested and has tissue-specific acetylome patterns.   Metabolic stress led to targeted changes in the cysteine acetylome of BAT.  Acetylation of the active site cysteines of GAPDH led to a sharp reduction in activity. This study uncovers a novel aspect of cysteine biochemistry, highlighting short-chain modifications alongside known long-chain acyl PTMs. These findings enrich our understanding of the landscape of acyl modifications and suggest new research directions in enzyme activity regulation and cellular signaling in metabolism.
DOI: 10.5517/ccdc.csd.cc2gntvt
title: CCDC 2284137: Experimental Crystal Structure Determination

description: Related Article: Selvaraj Geetha, Rajendran Sribalan, Srinivasakannan Lakshmi|2024|Chem.Phys.Imp|9|100660|doi:10.1016/j.chphi.2024.100660
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.