cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27894359
title: Additional file 10 of Mapping in silico genetic networks of the KMT2D tumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilities

description: Additional file 10: Table S9. Age and mutational signature activity scores of TCGA-COAD/READ cases.
DOI: 10.6084/m9.figshare.27894359.v1
title: Additional file 10 of Mapping in silico genetic networks of the KMT2D tumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilities

description: Additional file 10: Table S9. Age and mutational signature activity scores of TCGA-COAD/READ cases.
DOI: 10.6084/m9.figshare.27894365
title: Additional file 12 of Mapping in silico genetic networks of the KMT2D tumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilities

description: Additional file 12: Table S10. Profiles of KMT2D mutations and immune markers in POG and MSK-IMPACT cases. A. POG solid cancer clinical data and immune marker profiles. OS: overall survival. censor_status: 1-living, 2-deceased. Fpkm: fragments per kilobase of transcript per million mapped reads. B_cells_naive to absolute_score_sig_score columns are immune cell composition score outputs from Cibersort. PredictIO_score: immune checkpoint response score (see Methods section). B. MSK-IMPACT cohort overall survival and TMB obtained from Samstein et al. (13), and MSI and KMT2D status (see Methods section).
DOI: 10.6084/m9.figshare.27894365.v1
title: Additional file 12 of Mapping in silico genetic networks of the KMT2D tumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilities

description: Additional file 12: Table S10. Profiles of KMT2D mutations and immune markers in POG and MSK-IMPACT cases. A. POG solid cancer clinical data and immune marker profiles. OS: overall survival. censor_status: 1-living, 2-deceased. Fpkm: fragments per kilobase of transcript per million mapped reads. B_cells_naive to absolute_score_sig_score columns are immune cell composition score outputs from Cibersort. PredictIO_score: immune checkpoint response score (see Methods section). B. MSK-IMPACT cohort overall survival and TMB obtained from Samstein et al. (13), and MSI and KMT2D status (see Methods section).
DOI: 10.6084/m9.figshare.27894374
title: Additional file 15 of Mapping in silico genetic networks of the KMT2D tumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilities

description: Additional file 15: Table S11. List of DepMap cancer cell lines in WRNWT/WRNLOF groups. A. DepMap_ID: DepMap cancer cell lines IDs. stripped_cell_line_name: cell line names provided by DepMap without special characters or spaces. disease: cancer type assigned by DepMap. disease_subtype: cancer subtype assigned by Depmap. MS_status: inferred microsatellite status by Ghandi et al. (2019). Group: WRN group assigned (Control refers to the WTWT group; pan-cancer). Total_mutations: total number of mutations detected (LOF and non-LOF). LOF_mutations: number of LOF SNVs and insertion deletions detected (see Methods). CN_status: copy number status. KMT2D_prob: lethality probability when KMT2D is knocked out in the cell line. B. DepMap cancer cell lines that were previously validated to be dependent or independent of WRN. DepMap_ID: DepMap cancer cell lines IDs. stripped_cell_line_name: Cell line names provided by DepMap without special characters or spaces. disease: cancer type assigned by DepMap. Author: first author of study. WRN_dependence: whether authors showed WRN dependence. TRUE indicates KO of WRN was lethal to cell lines and FALSE indicates that cells were viable when WRN was knocked out. C. KMT2D and MMR mutations detected by DepMap WGS/WES characterization in cell lines from B.
DOI: 10.6084/m9.figshare.27894374.v1
title: Additional file 15 of Mapping in silico genetic networks of the KMT2D tumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilities

description: Additional file 15: Table S11. List of DepMap cancer cell lines in WRNWT/WRNLOF groups. A. DepMap_ID: DepMap cancer cell lines IDs. stripped_cell_line_name: cell line names provided by DepMap without special characters or spaces. disease: cancer type assigned by DepMap. disease_subtype: cancer subtype assigned by Depmap. MS_status: inferred microsatellite status by Ghandi et al. (2019). Group: WRN group assigned (Control refers to the WTWT group; pan-cancer). Total_mutations: total number of mutations detected (LOF and non-LOF). LOF_mutations: number of LOF SNVs and insertion deletions detected (see Methods). CN_status: copy number status. KMT2D_prob: lethality probability when KMT2D is knocked out in the cell line. B. DepMap cancer cell lines that were previously validated to be dependent or independent of WRN. DepMap_ID: DepMap cancer cell lines IDs. stripped_cell_line_name: Cell line names provided by DepMap without special characters or spaces. disease: cancer type assigned by DepMap. Author: first author of study. WRN_dependence: whether authors showed WRN dependence. TRUE indicates KO of WRN was lethal to cell lines and FALSE indicates that cells were viable when WRN was knocked out. C. KMT2D and MMR mutations detected by DepMap WGS/WES characterization in cell lines from B.
DOI: 10.6084/m9.figshare.27894380
title: Additional file 17 of Mapping in silico genetic networks of the KMT2D tumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilities

description: Additional file 17: Table S12. Characterising [AT]n motif expansion in cancer cell lines. A. All MSI DepMap cancer cell lines with WGS data and three MSS DepMap cell lines with WGS data for comparison. Cell_line_stripped_name: cell line names provided by DepMap without special characters or spaces. disease: cancer type assigned by DepMap. MSI_status: inferred microsatellite status by Ghandi et al. (2019). KMT2D_group: KMT2D group assigned to a cell line. SRA_project_ID: NCBI SRA project ID for raw WGS data. SRA_Run_ID: NCBI SRA run ID for raw WGS data. Instrument: sequencer used to perform WGS. B. Profiles of [AT]n motifs generated using ExpansionHunter Denovo. Cell_line_name: cell line names provided by DepMap without special characters or spaces. disease: cancer type assigned by DepMap. SRA_id: NCBI SRAN run ID. group: MSI status and KMT2D group of cell line. Contig: chromosome location of motif. Start: start site (bp) of motif. End: end site (bp) of motif. Motif: motif type. Num_anc_irrs: number of anchored in-repeat reads (i.e. one read pair maps within and the other outside of a repeat region; see Methods). norm_num_anc_irrs: normalised number of anchored in-repeat reads. Het_str_size: estimated motif repeat size.
DOI: 10.6084/m9.figshare.27894380.v1
title: Additional file 17 of Mapping in silico genetic networks of the KMT2D tumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilities

description: Additional file 17: Table S12. Characterising [AT]n motif expansion in cancer cell lines. A. All MSI DepMap cancer cell lines with WGS data and three MSS DepMap cell lines with WGS data for comparison. Cell_line_stripped_name: cell line names provided by DepMap without special characters or spaces. disease: cancer type assigned by DepMap. MSI_status: inferred microsatellite status by Ghandi et al. (2019). KMT2D_group: KMT2D group assigned to a cell line. SRA_project_ID: NCBI SRA project ID for raw WGS data. SRA_Run_ID: NCBI SRA run ID for raw WGS data. Instrument: sequencer used to perform WGS. B. Profiles of [AT]n motifs generated using ExpansionHunter Denovo. Cell_line_name: cell line names provided by DepMap without special characters or spaces. disease: cancer type assigned by DepMap. SRA_id: NCBI SRAN run ID. group: MSI status and KMT2D group of cell line. Contig: chromosome location of motif. Start: start site (bp) of motif. End: end site (bp) of motif. Motif: motif type. Num_anc_irrs: number of anchored in-repeat reads (i.e. one read pair maps within and the other outside of a repeat region; see Methods). norm_num_anc_irrs: normalised number of anchored in-repeat reads. Het_str_size: estimated motif repeat size.
DOI: 10.6084/m9.figshare.27894401
title: Additional file 2 of Technical variability across the 450K, EPICv1, and EPICv2 DNA methylation arrays: lessons learned for clinical and longitudinal studies

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.27894401.v1
title: Additional file 2 of Technical variability across the 450K, EPICv1, and EPICv2 DNA methylation arrays: lessons learned for clinical and longitudinal studies

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.27894406
title: Additional file 1 of Associations between genetic variants of Toll-interacting proteins and interstitial lung diseases: a systematic review and meta-analysis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27894406.v1
title: Additional file 1 of Associations between genetic variants of Toll-interacting proteins and interstitial lung diseases: a systematic review and meta-analysis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27894439
title: Additional file 1 of Insights into geometric deviations of medical 3d-printing: a phantom study utilizing error propagation analysis

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.27894439.v1
title: Additional file 1 of Insights into geometric deviations of medical 3d-printing: a phantom study utilizing error propagation analysis

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.27894467
title: Additional file 1 of Engineering Saccharomyces cerevisiae for the production of natural osmolyte glucosyl glycerol from sucrose and glycerol through Ccw12-based surface display of sucrose phosphorylase

description: Supplementary Material 1: Details of the plasmid and strain construction
DOI: 10.6084/m9.figshare.27894467.v1
title: Additional file 1 of Engineering Saccharomyces cerevisiae for the production of natural osmolyte glucosyl glycerol from sucrose and glycerol through Ccw12-based surface display of sucrose phosphorylase

description: Supplementary Material 1: Details of the plasmid and strain construction
DOI: 10.6084/m9.figshare.27894478
title: Additional file 3 of Distinct expression profile reveals glia involvement in the trigeminal system attributing to post-traumatic headache

description: Additional file 3: Enriched Go terms and differentially expressed genes from three different regions (TG, Sp5C and PAG) following mTBI.
DOI: 10.6084/m9.figshare.27894478.v1
title: Additional file 3 of Distinct expression profile reveals glia involvement in the trigeminal system attributing to post-traumatic headache

description: Additional file 3: Enriched Go terms and differentially expressed genes from three different regions (TG, Sp5C and PAG) following mTBI.
DOI: 10.6084/m9.figshare.27894496
title: Additional file 2 of Molecular diagnosis of mtDNA syndromes in Egyptian pediatric patients: a hospital-based study

description: Additional file 2.
DOI: 10.6084/m9.figshare.27894496.v1
title: Additional file 2 of Molecular diagnosis of mtDNA syndromes in Egyptian pediatric patients: a hospital-based study

description: Additional file 2.
DOI: 10.6084/m9.figshare.27894491.v1
title: Additional file 2 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27894491
title: Additional file 2 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27894494
title: Additional file 3 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.27894494.v1
title: Additional file 3 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.27894497
title: Additional file 4 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.27894497.v1
title: Additional file 4 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.27894500
title: Additional file 5 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.27894500.v1
title: Additional file 5 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.27894503
title: Additional file 6 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.27894503.v1
title: Additional file 6 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 6
DOI: 10.15468/dl.wjeec3
title: Occurrence Download

description: A dataset listing the 10633 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is EOD – eBird Observation Dataset"
 ]
}

 The dataset's 10633 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029499-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27894506
title: Additional file 7 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.27894506.v1
title: Additional file 7 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.27894509
title: Additional file 8 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 8
DOI: 10.6084/m9.figshare.27894509.v1
title: Additional file 8 of Bio-organic fertilizer affects secondary cell wall biosynthesis of Dendrocalamus farinosus by inhibiting the phenylpropanoid metabolic pathway

description: Supplementary Material 8
DOI: 10.6084/m9.figshare.27894518
title: Additional file 2 of CUL4A-DDB1-circRFWD2 E3 ligase complex mediates the ubiquitination of p27 to promote multiple myeloma proliferation

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27894518.v1
title: Additional file 2 of CUL4A-DDB1-circRFWD2 E3 ligase complex mediates the ubiquitination of p27 to promote multiple myeloma proliferation

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27894520
title: Additional file 1 of Avian influenza virus circulation and immunity in a wild urban duck population prior to and during a highly pathogenic H5N1 outbreak

description: Additional file 1. Detailed records for samples from ducks that were used in this study. Samples from the 2011–2012 period were no longer available, therefore the previously published data [38] were used and are presented as only anti-NP antibody-positive or -negative.
DOI: 10.6084/m9.figshare.27894520.v1
title: Additional file 1 of Avian influenza virus circulation and immunity in a wild urban duck population prior to and during a highly pathogenic H5N1 outbreak

description: Additional file 1. Detailed records for samples from ducks that were used in this study. Samples from the 2011–2012 period were no longer available, therefore the previously published data [38] were used and are presented as only anti-NP antibody-positive or -negative.
DOI: 10.5281/zenodo.14208288
title: ОЦЕНКА КАЧЕСТВА ЖИЗНИ У ПАЦИЕНТОВ С ХОБЛ АССОЦИРОВАННЫЙ С МЕТАБОЛИЧЕСКИМ СИНДРОМОМ
DOI: 10.5281/zenodo.14208289
title: ОЦЕНКА КАЧЕСТВА ЖИЗНИ У ПАЦИЕНТОВ С ХОБЛ АССОЦИРОВАННЫЙ С МЕТАБОЛИЧЕСКИМ СИНДРОМОМ
DOI: 10.15468/dl.q733x4
title: Occurrence Download

description: A dataset containing 1224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Anopheles dirus Peyton & Harrison, 1979, Anopheles dirus A, Anopheles leucosphyrus Dönitz, 1901, Anopheles introlatus Colless, 1957, Anopheles balabacensis Baisas, 1936, Anopheles baisasi Colless, 1957, Anopheles cracens Sallum & Peyton, 2005, Anopheles scanloni Sallum & Peyton, 2005, Anopheles baimaii Sallum & Peyton, 2005, Anopheles elegans (James, 1903))"
 ]
}

 The dataset includes 1224 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029501-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kmm99s
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isoetes herzogii U.Weber"
 ]
}

 The dataset includes 42 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029502-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7pckay
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isoetes palmeri H.P.Fuchs"
 ]
}

 The dataset includes 177 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029503-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmb2mn
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isoetes jamaicensis Hickey"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029504-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jsgn3w
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isoetes texana Singhurst, Rushing & W.C.Holmes"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029505-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pfq82e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isoetes dubsii J.B.S.Pereira"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029506-241107131044228/datasets/export for details.
DOI: 10.15468/dl.25m8nj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isoetes dubsii J.B.S.Pereira"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029507-241107131044228/datasets/export for details.
DOI: 10.15468/dl.3xd2cd
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stichodactyla tapetum (Hemprich & Ehrenberg, 1834)"
 ]
}

 The dataset includes 186 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029508-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.keheeh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isoetes dubsii J.B.S.Pereira"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029509-241107131044228/datasets/export for details.
DOI: 10.15468/dl.fbtp5g
title: Occurrence Download

description: A dataset containing 1224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Anopheles dirus Peyton & Harrison, 1979, Anopheles introlatus Colless, 1957, Anopheles balabacensis Baisas, 1936, Anopheles baisasi Colless, 1957, Anopheles cracens Sallum & Peyton, 2005, Anopheles scanloni Sallum & Peyton, 2005, Anopheles baimaii Sallum & Peyton, 2005, Anopheles elegans (James, 1903), Anopheles leucosphyrus Dönitz, 1901)"
 ]
}

 The dataset includes 1224 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029510-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j39x72
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isoetes santacruzensis J.B.S.Pereira"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029511-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2zdpm
title: Occurrence Download

description: A dataset containing 711 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marsilea ancylopoda A.Braun"
 ]
}

 The dataset includes 711 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029512-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14206317
title: Multivocal Study on Microservice Dependencies
DOI: 10.5281/zenodo.14206318
title: Multivocal Study on Microservice Dependencies
DOI: 10.5281/zenodo.14207827
title: Multivocal Study on Microservice Dependencies
DOI: 10.5281/zenodo.14208294
title: Multivocal Study on Microservice Dependencies