cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.802300
title: Individual-Based Simulation Model Of Annual Movement Paths For The Darwin'S Frog (R Code And Data)

description: Desprition of the R code

I constructed an individual-based simulation model that describes the movement path of an individual<em> Rhinoderma darwinii</em> through 3-month displacement steps. This model was primarily developed to evaluate the age-specific movement behaviour of Darwin's frogs, however, I also used it to provide better estimates (i.e. alleviating for movement censoring) of age-specific annual displacements in the species. I developed several variations of this model through a combination of different random walk sub-models for juveniles and adults: uncorrelated non-stationary random walks (NRW), correlated non-stationary random walks (CRW), and stationary random walks (SRW). The NRW and CRW were modelled as a first-order Markovian process where the location of an individual <em>i</em> in time<em> t</em> depends on its spatial location in <em>t </em>- 1. The NRW is unbiased, i.e., there is no preferred direction in each movement step. In contrast, the CRW includes persistence in the directionality of movement, so there is a correlation between successive step orientations. Finally, the SRW assumes that individuals have an activity centre to which all their spatial locations are related.

Related data are provided (y.txt, x.txt and age.txt)
DOI: 10.5281/zenodo.802697
title: Ist-2017

description: Data and Scripts for Our IST 2017 paper.
DOI: 10.5281/zenodo.802698
title: Ist-2017

description: Data and Scripts for Our IST 2017 paper.
DOI: 10.6073/pasta/ecc72ed682eb6d0e1481bdf0b88b7b57
title: Surface Water Quality Monitoring Data collected in South Florida Coastal Waters (FCE) from June 1989 to Present
DOI: 10.5281/zenodo.583326
title: Framework And Resource For More Than 11,000 Gene-Transcript-Protein-Reaction Associations In Human Metabolism

description: Eight versions of COBRA-compliant SBML files are available for each Recon 2M.1 and Recon 2M.2 depending on the use of: MNXref versus BiGG IDs; Entrez gene IDs (GPR associations) versus Ensembl transcript IDs versus RefSeq transcript IDs versus UCSC transcript IDs (TPR associations for the last three database IDs).
	892 personal GEMs (only T-GEMs) built with Recon 2.2
	1,784 personal GEMs (both P-GEMs and T-GEMs) built with Recon 2M.1
	892 personal GEMs (only T-GEMs) built with Recon 2M.2


 

<strong>Publication</strong>

Jae Yong Ryu<sup>1</sup>, Hyun Uk Kim<sup>1</sup> & Sang Yup Lee<sup>*</sup>. Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism., <em>Proc. Natl. Acad. Sci. U.S.A.</em>, 2017, http://www.pnas.org/content/early/2017/10/23/1713050114
description: This work was supported by the Technology Development Program to Solve Climate Changes on Systems Metabolic Engineering for Biorefineries (NRF-2012M1A2A2026556 and NRF-2012M1A2A2026557) from the Ministry of Science, ICT and Future Planning (MSIP) through the National Research Foundation (NRF) of Korea.
DOI: 10.5281/zenodo.599876
title: Framework And Resource For More Than 11,000 Gene-Transcript-Protein-Reaction Associations In Human Metabolism

description: Eight versions of COBRA-compliant SBML files are available for each Recon 2M.1 and Recon 2M.2 depending on the use of: MNXref versus BiGG IDs; Entrez gene IDs (GPR associations) versus Ensembl transcript IDs versus RefSeq transcript IDs versus UCSC transcript IDs (TPR associations for the last three database IDs).
	892 personal GEMs (only T-GEMs) built with Recon 2.2
	1,784 personal GEMs (both P-GEMs and T-GEMs) built with Recon 2M.1
	892 personal GEMs (only T-GEMs) built with Recon 2M.2


 

<strong>Publication</strong>

Jae Yong Ryu<sup>1</sup>, Hyun Uk Kim<sup>1</sup> & Sang Yup Lee<sup>*</sup>. Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism., <em>Proc. Natl. Acad. Sci. U.S.A.</em>, 2017, http://www.pnas.org/content/early/2017/10/23/1713050114
description: This work was supported by the Technology Development Program to Solve Climate Changes on Systems Metabolic Engineering for Biorefineries (NRF-2012M1A2A2026556 and NRF-2012M1A2A2026557) from the Ministry of Science, ICT and Future Planning (MSIP) through the National Research Foundation (NRF) of Korea.
DOI: 10.5281/zenodo.802541
title: Statistics Of Population In Upper Austria

description: The result of the experiment 'Statistics of population in Upper Austria'.

Contains a database dump of a Postgres version 9.5.2

Metadata can be obtained here: https://www.data.gv.at/katalog/dataset/e108dcc3-1304-4076-8619-f2185c37ef81

The population table contains the data from the Link but filtered. Only the following columns are available. The metadata of the columns are the same as in the link above.


	lau2_code            
	lau2_name            
	year            
	sex            
	age_total


In the calculation table the result is stored. The following columns exists:


	year            
	sex            
	mean


'Year' is the year when the data was observed. 

'Sex' represents the gender of the population and can have the values 0,1,2 (1 = male, 2 = female, 0 = total)

'mean' is the average population per village.
DOI: 10.5281/zenodo.802542
title: Statistics Of Population In Upper Austria

description: The result of the experiment 'Statistics of population in Upper Austria'.

Contains a database dump of a Postgres version 9.5.2

Metadata can be obtained here: https://www.data.gv.at/katalog/dataset/e108dcc3-1304-4076-8619-f2185c37ef81

The population table contains the data from the Link but filtered. Only the following columns are available. The metadata of the columns are the same as in the link above.


	lau2_code            
	lau2_name            
	year            
	sex            
	age_total


In the calculation table the result is stored. The following columns exists:


	year            
	sex            
	mean


'Year' is the year when the data was observed. 

'Sex' represents the gender of the population and can have the values 0,1,2 (1 = male, 2 = female, 0 = total)

'mean' is the average population per village.
DOI: 10.17862/cranfield.rd.5058478.v1
title: Initial Hierarchy Weighting and Score vs Activities

description: This is an initial excel file with weightings for the Maslow Hierarchy and scores vs campaign activities.The Maslow Hierarchy has been applied to a generic situation conflict by examining the levels and assessing the impact of military and other actions on the elements of this hierarchy. This is basically the format of the matrix.The left hand axis is the Maslow hierarchy - each layer of which is weighted.  The columns are the list of actions in the campaign.  the entries are then refer each action to each Maslow line. The matrix is a first draft and the intent is to determine the utility of this in modelling campaigns and in terms of the consistency of the scores and weightings. The idea is then to produce a quantified interconnected model which allows a change in one input to affect a specific element of the Maslow hierarchy and then an outcome in terms of a positive or negative effect on ‘perception’ is generated.  There is then a linkage to the use of the Cranfield RCAT wargame which uses these types of information.
DOI: 10.3886/e100706v1
title: Dividing usage duration of products reduces delay discounting

description: When making purchase decisions for a product, consumers
often consider usage duration.
We demonstrate that when usage duration is
divided into parts, consumers discount the value of a delayed product to a lesser
degree. <br>
DOI: 10.17632/2nd9gr954b.1
title: MOLECULAR-CELL-D-16-01555 Inano et al

description: Original unprocessed gels and ICC images analyzed for this manuscript are included.
DOI: 10.17632/cc8d3fzmkc.1
title: Simulated variance-covariace matriz

description: These data reproduce the controlled simulation of variance-covariance structure of real survey based on a multivariate normal distribution. For each cluster of questions, also called "Construct", is assigned a desired level of correlation. To reproduce the correlation among several groups of questions, a chosen correlation coefficient is also assigned to the blocks of constructs.
DOI: 10.4225/22/5934b50c9c524
title: Rice germination under oxygen presence / absence
DOI: 10.17632/6pm8g66mdh.1
title: Histone mutants separate R loop formation from genome instability induction. García-Pichardo et al.

description: Figures 4B (R loop PCR agarose gels), Figure 5C (2D chloroquine gels), Figure 6A and B (fluorescent western blots), Figure S1A (plates picture), Figure S2A (fluorescent western blot), Figure S3 (plates pictures), Figure S5A (autoradiography nothern blot), Figure S5C (autoradiography western blot), Figure S6A and S6B (1D and 2D chloroquine gels).
DOI: 10.17632/ssw6hwthcc.1
title: DNA replication is required for circadian clock function by regulating rhythmic nucleosome composition

description: Original data
DOI: 10.4225/22/5934b5f7e6045
title: Barley germination dissection
DOI: 10.5281/zenodo.800328
title: 3D Neighborhood Motion Maps (18-Neighborhood)

description: The file is a sqlite3 database which contains 3D neighborhood motions maps of 18-neighborhood together with sample points. It was computed while using a variation of the algorithm described in: Pluta K., Moroz G., Kenmochi Y., Romon P. (2016) Quadric Arrangement in Classifying Rigid Motions of a 3D Digital Image. In: Gerdt V., Koepf W., Seiler W., Vorozhtsov E. (eds) Computer Algebra in Scientific Computing. CASC 2016. Lecture Notes in Computer Science, vol 9890. Springer, doi:10.1007/978-3-319-45641-6_27

To refer to a version of the algorithm used to compute the file use DOI:10.5281/zenodo.573013 (https://zenodo.org/badge/latestdoi/53963129).
DOI: 10.5281/zenodo.802191
title: Qualitas.Class: A Compiled Version Of The Qualitas Corpus

description: We provide compiled Java projects for the 111 systems originally included in the Qualitas Corpus. We also gathered a large amount of metrics data (such as measurements from complexity, coupling, and CK metrics) about the systems. By making Qualitas.class Corpus public, our goal is to assist researchers by removing the compilation effort when conducting empirical studies.
description: 1. The collected metrics are in XML files compressed in the following file: metrics.zip

2. If you use the Qualitas.class Corpus in your research, please reference the following paper:

R. Terra; L. F. Miranda; M. T. Valente; Roberto S. Bigonha. Qualitas.class Corpus: A compiled version of the Qualitas Corpus. Software Engineering Notes, pages 1–4, 2013.
DOI: 10.5281/zenodo.802192
title: Qualitas.Class: A Compiled Version Of The Qualitas Corpus

description: We provide compiled Java projects for the 111 systems originally included in the Qualitas Corpus. We also gathered a large amount of metrics data (such as measurements from complexity, coupling, and CK metrics) about the systems. By making Qualitas.class Corpus public, our goal is to assist researchers by removing the compilation effort when conducting empirical studies.
description: 1. The collected metrics are in XML files compressed in the following file: metrics.zip

2. If you use the Qualitas.class Corpus in your research, please reference the following paper:

R. Terra; L. F. Miranda; M. T. Valente; Roberto S. Bigonha. Qualitas.class Corpus: A compiled version of the Qualitas Corpus. Software Engineering Notes, pages 1–4, 2013.
DOI: 10.5517/ccdc.csd.cc1p5163
title: CCDC 1553974: Experimental Crystal Structure Determination

description: Related Article: Frank R. Fronczek|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15121/1361050
title: Surface Temperature Anomalies Derived from Night Time ASTER Data Corrected for Solar and Topographic Effects, Alamosa and Saguache Counties, Colorado

description: This map shows areas of anomalous surface temperature in Alamosa and Saguache Counties identified from ASTER thermal data and spatial based insolation model. The temperature is calculated using the Emissivity Normalization Algorithm that separate temperature from emissivity. The incoming solar radiation was calculated using spatial based insolation model developed by Fu and Rich (1999). Then the temperature due to solar radiation was calculated using emissivity derived from ASTER data. The residual temperature, i.e. temperature due to solar radiation subtracted from ASTER temperature was used to identify thermally anomalous areas. Areas that had temperature greater than 2o were considered ASTER modeled "very warm modeled surface temperature" are shown in red on the map. Areas that had temperatures between 1o and 2o were considered ASTER modeled "warm modeled surface temperature" are shown in yellow on the map. This map also includes the locations of shallow temperature survey points, locations of springs or wells with favorable geochemistry, faults, transmission lines, and areas of modeled basement weakness "fairways." Note: 'o' is used in this description to represent lowercase sigma.
DOI: 10.5281/zenodo.802848
title: Paralog Variant Classification And Scoring

description: <em>Para_zscore </em>data

Input data, annotation of all hg19 missense variants, score for every paralog gene

more details to follow

 

Information on the files, scripts to generate and use the <em>para_zscore</em> are available under

https://git-r3lab.uni.lu/genomeanalysis/paralogs.
DOI: 10.5517/ccdc.csd.cc1p54xx
title: CCDC 1554089: Experimental Crystal Structure Determination

description: Related Article: B.W.Skelton, K.J.Cavell, D.J.Nielsen|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/rvx2qu
title: Typification of binomials in XyrissectionNematopus (Xyridaceae) published by L. A. Nilsson

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wanderley, Maria das Gracas Lapa (2017): Typification of binomials in XyrissectionNematopus (Xyridaceae) published by L. A. Nilsson. PhytoKeys 80: 65-86, DOI: http://dx.doi.org/10.3897/phytokeys.80.12348, URL: http://dx.doi.org/10.3897/phytokeys.80.12348
DOI: 10.15468/sfk4mr
title: Epitypification with an emended description of Tropidiaconnata (Orchidaceae, Epidendroideae, Tropidieae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kikuchi, Izai Alberto Bruno Sabino, Tsukaya, Hirokazu (2017): Epitypification with an emended description of Tropidiaconnata (Orchidaceae, Epidendroideae, Tropidieae). PhytoKeys 80: 77-85, DOI: http://dx.doi.org/10.3897/phytokeys.80.12304, URL: http://dx.doi.org/10.3897/phytokeys.80.12304
DOI: 10.15468/1at1rx
title: Hoya of the Philippines part I. Hoyamigueldavidii (Apocynaceae, Asclepiadoideae), a new species from Northern Mindanao, Philippines

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cabactulan, Derek D., Rodda, Michele, Pimentel, Reynold (2017): Hoya of the Philippines part I. Hoyamigueldavidii (Apocynaceae, Asclepiadoideae), a new species from Northern Mindanao, Philippines. PhytoKeys 80: 105-112, DOI: http://dx.doi.org/10.3897/phytokeys.80.12872, URL: http://dx.doi.org/10.3897/phytokeys.80.12872
DOI: 10.5281/zenodo.802853
title: Paralog Variant Classification And Scoring

description: <em>Para_zscore </em>data

Input data, annotation of all hg19 missense variants, score for every paralog gene

more details to follow

 

Information on the files, scripts to generate and use the <em>para_zscore</em> are available under

https://git-r3lab.uni.lu/genomeanalysis/paralogs.
DOI: 10.14455/isec.res.2017.106
title: Application of innovative materials in precast concrete structures

description: Construction industry contributes essentially to Germany
DOI: 10.14455/isec.res.2017.113
title: PREDICTING PERFORMANCE IN DESIGN-BID-BUILD PROJECTS

description: Design-bid-build (DBB) is the most common delivery method for public and private construction projects in Spain, and is also widely used in the United States (U.S.).  While the execution of DBB projects in Spain and the U.S. is similar in many ways, owners in Spain approach the procurement of the general contractor and subcontractors differently.  There is a greater emphasis on selecting firms that provide the
DOI: 10.5281/zenodo.802321
title: Observed Monthly N2O Emission Dataset Used For Model Carlibaration And Validation

description: The N<sub>2</sub>O emission dataset for calibration sites was extracted from the published figures and tables using GetData Graph Digitizer version 2.24; the other information such as biome, geographic location, experimental period, soil organic carbon content, soil pH and soil texture was selected from corresponding literature. If the data related to soil was not avaliable, we extracted them from the soil database(IGBP-DIS)
DOI: 10.5281/zenodo.802322
title: Observed Monthly N2O Emission Dataset Used For Model Carlibaration And Validation

description: The N<sub>2</sub>O emission dataset for calibration sites was extracted from the published figures and tables using GetData Graph Digitizer version 2.24; the other information such as biome, geographic location, experimental period, soil organic carbon content, soil pH and soil texture was selected from corresponding literature. If the data related to soil was not avaliable, we extracted them from the soil database(IGBP-DIS)
DOI: 10.5281/zenodo.596089
title: Modeling Of The Nup84 Subcomplex Of The Nuclear Pore Complex

description: These scripts demonstrate the use of IMP, MODELLER, and PMI in the modeling of the Nup84 complex using 286 DSS/EDC chemical cross-links and an electron microscopy (EM) 2D class average.

First, MODELLER is used to generate initial structures for the individual components in the Nup84 complex. Then, IMP is used to model these components using DSS/EDC crosslinks and the electron microscopy 2D class average for the entire Nup84 complex.
DOI: 10.5523/bris.112g2vkxomjoo1l26vjmvnlexj
title: State anxiety and emotional face recognition in healthy volunteers (study three - online task)

description: An online observational study investigating the association between state/trait anxiety and emotional face recognition. Healthy adults (n = 2006) completed a six alternated forced choice task in which they were presented with basic emotional expressions (anger, disgust, fear, happiness, sadness and surprise) and were required to identify the emotion present in the face. Outcome measures were recognition accuracy and unbiased hit rate (i.e., sensitivity).
DOI: 10.5523/bris.tdkhpfjk64ip1o86m4tq9e306
title: State anxiety and emotional face recognition in healthy volunteers (study one - discovery)

description: Experimental study (n = 21) investigating effects of state anxiety on emotional face processing. Participants attended one session and completed two inhalations: one of 7.5% carbon dioxide-enriched air (state anxiety condition) and one of medical air (placebo condition). During each inhalation participants completed a six-alternate forced choice task measuring recognition accuracy and sensitivity of six emotional expressions and a two alternate forced choice task measuring interpretation bias of composite emotional expressions (i.e., morphs of anger and happiness).  Participants in this study were consented under procedures that did not include consent for data to be made open.
DOI: 10.14455/isec.res.2017.127
title: DISASTER IMAGINATION GAME ENHANCED BY MOBILE MAPPING SYSTEM AND ITS APPLICATION

description: DIG (Disaster Imagination Game) is carried out as an emergency drill in Japan.  What is DIG ?   Assuming a situation where a large disaster occurs in the region, the predicted hazard is indicated on the transparent sheet which is put on top of the regional map by using pen and seal by the participants in a workshop.  Thus creating the original hazard map in the region, the information of risk can be shared in advance and the required preparation and cooperation can be recognized among the participants.  Moreover, it is helpful to determine the appropriate location for the shelter and evacuation routes.However, the hazard is often overlooked since planar maps are generally used in DIG and the participants are required to predict the hazard by their prior knowledge about the region and the information acquired from the map.  In this study, the new developments are proposed in which the serial video captured by MMS (Mobile Mapping System) is used as well as the map.    The combination of the map and the serial video helps the detection of the hazard.   Moreover, the hazard detected in the workshop is illustrated not only on the map but also in the serial video by superimposing the displays and captions.  The effectiveness of the proposed system is discussed through the application to the practice of DIG.
DOI: 10.14457/cu.the.2006.814
title: การศึกษาการประเมินราคาเครื่องจักร สำหรับอุตสาหกรรมไทย /
DOI: 10.14457/cu.the.2006.815
title: การศึกษาการลดลงของระดับบิลิรูบิน ในผู้ป่วยโรคตับที่มีภาวะบิลินรูบินคั่งในกระแสเลือด ด้วยการฟอกเลือดวิธีซิงเกิลพาสอัลบูมิน /
DOI: 10.14457/tu.the.2006.112
title: การศึกษาการพัฒนาทุนทางสังคม เพื่อการดำรงชีวิตตามวิถีเศรษฐกิจพอเพียง กรณีศึกษา หมู่บ้านห้วยต้นตุ้ม ตำบลห้วยลาน อำเภอดอกคำใต้ จังหวัดพะเยา /
DOI: 10.14458/dpu.the.2006.67
title: การศึกษาการยอมรับผลิตภัณฑ์เสริมอาหารประเภทบำรุงผิวพรรณ ของผู้บริโภคในเขตกรุงเทพมหานคร /
DOI: 10.14458/krirk.the.2006.25
title: การศึกษาการบริโภคอาหารประเภทฟาสท์ฟู้ดของกลุ่มคนวัยหนุ่มสาว ในกรุงเทพมหานคร /
DOI: 10.5281/zenodo.640281
title: Modeling Exosome Complexes From Cross-Link Ms Data

description: This repository contains the modeling scripts, the ensemble of models, and the results of the analysis for the modeling of the <em>S.cerevisiae</em> exosome complex (named exo10, comprising of Rrp40, Rrp4, Csl4, Rrp45, Rrp46, Rrp42, Rrp43, Mtr3, Ski6 and Rrp44), in presence of Ski7 (exo10+Ski7 below) or Rrp6 (exo10+Rrp6 below) proteins. The modeling is performed based on cross-link Mass-Spectrometry data, crystallographic structures, and comparative models.
DOI: 10.14457/cu.res.2006.28
title: การศึกษาการจัดการเรียนการสอนภาษาต่างประเทศ และความต้องการภาษาต่างประเทศในภาคกลาง ภาคตะวันตกและภาคตะวันออก /
DOI: 10.14457/kmutnb.the.2004.3
title: คุณสมบัติทางวิศวกรรมของดินเหนียวแห้งแข็งเสริมกำลังด้วยขยะพลาสติก /
DOI: 10.14457/kmutnb.the.2005.201
title: การออกแบบระบบสนับสนุนการตัดสินใจในการวางแผนการผลิตในอุตสาหกรรมเฟอร์นิเจอร์ กรณีศึกษา : บริษัท เจนนิวท์ โปรดักท์ จำกัด /
DOI: 10.14457/lpru.the.2006.2
title: การศึกษาการจัดระบบสารสนเทศเพื่อการบริหารสถานศึกษา ในสถาบันการอาชีวศึกษาภาคเหนือ 3 สังกัดสำนักงานคณะกรรมการการอาชีวศึกษา /
DOI: 10.14457/su.the.2006.140
title: การศึกษาการปฏิบัติงาน ตามหลักสูตรสถานศึกษา โดยประยุกต์ใช้ Balanced Scorecard [BSC] : กรณีศึกษา โรงเรียนบ้านแหลม /
DOI: 10.14457/tru.the.2006.12
title: การศึกษาการมีส่วนร่วมของคณะกรรมการสถานศึกษาขั้นพื้นฐาน ในการส่งเสริมการจัดการเรียนการสอน : กรณีศึกษากลุ่มโรงเรียนโป่งนก สำนักงานเขตพื้นที่การศึกษาชัยภูมิเขต 3 /
DOI: 10.14457/tu.res.2006.14
title: การศึกษาการพัฒนาประเทศมองผ่านการใช้ทรัพยากรธรรมชาติสมัยรัชกาลที่ 5 กับสมัยปัจจุบัน : เหมืองแร่ /
DOI: 10.14457/kmutnb.the.2004.4
title: การสร้างและหาประสิทธิภาพชุดฝึกอบรมการทำงานของระบบการกระตุ้น และรักษาระดับแรงดันอัตโนมัติของเครื่องกำเนิดไฟฟ้ากระแสสลับ /
DOI: 10.14457/kmutnb.the.2004.5
title: ปัจจัยที่มีผลต่อการตัดสินใจซื้อบ้านจัดสรรในเขตจังหวัดภูเก็ต ของข้าราชการส่วนท้องถิ่น /