cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/28cft6pz76
title: CELL-CHEMICAL-BIOLOGY-D-22-00559R2 McConnell et al.

description: This data set contains i) original western blot images and ii) raw FRET kinetics fluorescence data for "Spike-protein proteolytic antibodies in COVID-19 convalescent plasma contribute to SARS-CoV-2 neutralization." Cell Chemical Biology. 2023.
DOI: 10.17632/2fm3bxctrx
title: Adhesion Strength-Chemical Composition of Carbon Nanotubes and Cement

description: The data presented in this file corresponds to the raw data, analyzed data files, and supplementary information of the procedure for the paper "Characterization of Adhesion Strength between Carbon Nanotubes and Cementitious Materials" by Marrero Rosa, R.E., Corr, D.J., Espinosa, H.D., and Shah, S.P.

Adhesion Data for Sections 3.1, 3.2, and 3.3 file contains:
1. adh_{name}_{section}.txt - are files that contain the raw data of adhesion force and indentation depth measure by the MWCNTs modified AFM probe and the different substrates presented. 
2. {name}.tif - are some images obtain within the AFM procedure of the tested regions
3.  cement micoindentation_benchmark - shows the roughness data obtain by Laser Confocal Microscope in preparation to acquire adhesion maps.
4. Adhesion_Supplementary analysis_information- give insight into the data analysis and interpretation for the 3 sets of data acquisition presented in the paper.

Chemical Analysis Correlation Section 3.3 file contains:
1. {name}.tif - 25um by 25 um AFM topography superimposed to the electron image chemical analysis lines for adhesion strength and chemistry correlation.
2. Line Data {num}.cvs - chemical analysis line raw data
3. Lien Data {num}.xlsx - chemical analysis data calculations and mapping coordinate calculation in columns (P-S). Average 3 is a moving average of 3 elements and an average 5 moving average of 5 for Ca/Si, (Al+Fe)/Ca, or S/Ca ratios
4. SEMEDS 1042020_mapping_2.pttx - a strategy used for getting the mapping coordinates from SEM-EDS and AFM-QNM. Ca/Si is correlated to the adhesion strength of the nearest point in the AFM QNM grid. 

Please contact me regarding any questions, raul.marrero@northwestern.edu.
DOI: 10.17632/kjym3w4g36
title: Exportin-1 functions as an adaptor for transcription factor-mediated docking of chromatin at the nuclear pore complex

description: Nuclear pore proteins (Nups) physically interact with hundreds of chromosomal sites, impacting transcription. In yeast, transcription factors mediate interactions between Nups and enhancers and promoters. To define the molecular basis of this mechanism, we exploited a separation-of-function mutation in the Gcn4 transcription factor that blocks its interaction with the nuclear pore complex (NPC). This mutation reduces the interaction of Gcn4 with the highly conserved nuclear export factor Crm1/Xpo1. Crm1 and Nups co-occupy enhancers and Crm1 inhibition blocks interaction of the nuclear pore protein Nup2 with the genome. In vivo, Crm1 interacts stably with the NPC. In vitro, Crm1 binds both Gcn4 and Nup2 directly. Importantly, the interaction between Crm1 and Gcn4 requires neither Ran-GTP nor the nuclear export sequence binding site. Finally, Crm1 and Ran-GTP stimulate DNA binding by Gcn4, suggesting that allosteric coupling between Crm1-Ran-GTP binding and DNA binding facilitates docking of transcription factor-bound enhancers at the NPC.

This dataset contains processed aligned reads (.bam files) from four main questions we addressed in our paper:
1) Where do Crm1, Nups, and RNA Pol II bind in the genome? [ChEC-seq2]
2) What is the relationship between Crm1 and Nup2? Are they interdependent or does the binding of one factor depend on the other? [ChEC-seq2]
3) Does loss of Crm1 or Nups (Nup1/Nup2) affect nascent transcription? If so, how? [SLAM-seq]
4) How does Leptomycin B (LMB, inhibitor of Crm1) affect binding of Crm1 and transcription factor Gcn4 to the genome? [ChEC-seq2]

ChEC-seq2 data was obtained and processed as described in VanBelzen et al. 2024, with reads trimmed with Trimmomatic and mapped to the Saccharomyces cerevisiae genome (sacCer3) using Bowtie2. For peak calling analyses, we processed the bam files by trimming them to the first base pair and called peaks using DoubleChEC (VanBelzen et al. 2024). SLAM-seq was performed as described in Herzog et al. 2017 and Alalam et al., 2022, using 0.2 mM 4-thiouracil (4sU) for 6 min at 30°C prior to harvesting, and processed using SLAM-DUNK (Herzog et al. 2017), which generated the read counts (.tsv files). Differential expression was analyzed using DESeq2 (Love et al., 2014). All sample information (BioProject, Biosample, SRA, GEO) is included in the Sample information spreadsheet.
DOI: 10.17632/rr3bj974ry
title: (Dataset) Artificial intelligence applied to education

description: Dataset related to surveys on the use of artificial intelligence in higher education
DOI: 10.6084/m9.figshare.21136831.v1
title: Pollen_availability

description: Pollen availability data for all studied species
DOI: 10.6084/m9.figshare.26215184.v1
title: BIOMETRIC-DATASET

description: Project OverviewThis study aims to assess and compare stress responses in healthcare professionals during simulated pericardiocentesis, utilizing both a conventional mannequin and a virtual reality (VR) environment. Pericardiocentesis, crucial in managing cardiac tamponade, demands precision and decision-making under pressure, potentially inducing significant stress.MethodologyParticipants will perform the procedure in both simulated environments, with biometric indicators such as heart rate, skin conductance, and eletromyography recorded with a biosignal plux device, to evaluate stress intensity. Subjective stress assessments will complement biometric data, with statistical analysis identifying significant differences between simulation methods.SignificanceThe findings will elucidate the effectiveness of VR simulation in medical training compared to traditional mannequin-based methods, potentially guiding training decisions and improving healthcare professionals’ readiness for high-stress situations, thereby enhancing patient safety and treatment efficacy.ConclusionThis research aims to inform on the optimal use of VR technology in medical education and understand the psychological impacts of emergency medical procedures on healthcare providers, supporting technological innovation and psychological insights in medical education.FilesFiles were recorded adquired during the performing of pericardiocentesis in both scenarios using a biosignal plux device. Files are en txt format. This are the first 10 subjects of the project. The entire dataset is of 65 alumni, although some files are recorded sith some errors. If you need the complete dataset, please let me know.Thanks!
DOI: 10.6084/m9.figshare.27961557.v1
title: Database and code <b>Salivary response of spider monkeys</b>

description: Spider monkeys can modulate salivary physicochemical characteristics by consuming tannins. This database shows the data from our work to determine whether changes in salivary physicochemical characteristics occur towards other types of secondary metabolites present in their diet.
DOI: 10.6084/m9.figshare.4579093.v2
title: Probabilistic risk assessment for pedestrian–vehicle collision considering uncertainties of pedestrian mobility

description: <b>Objectives:</b> The uncertainties of pedestrian mobility are important factors affecting the accuracy and robustness of an active pedestrian protection system. This study is to provide the means for probabilistic risk evaluation of pedestrian–vehicle collision by counting the uncertainties in pedestrian motion. <b>Method:</b> The pedestrian is modeled by a first-order Markov model to characterize the stochastic properties in mobility according to field experiments of pedestrians crossing an uncontrolled road. Based on the assumption of Gaussian distribution, unscented transformation (UT) is employed to predict the collision risk probability with the symmetric σ-set constructed on the basis of discrete trajectory simulation. Simulation experiments were carried out with 10,000 Monte Carlo (MC) simulations as the reference. <b>Results:</b> The probability density distributions of time-to-collision, minimal distance, and collision probability estimated by UT coincide with the reference ones under various vehicle–pedestrian conflict scenarios, and the maximal deviation of collision probability from the reference is 5.33%. The UT method is about 600 times faster than the MC method (10,000 runs), which means that the proposed method has the potential for online application. <b>Conclusions:</b> This article presents an effective and efficient algorithm to estimate the collision probability by using a UT method to solve the nonlinear transformation of uncertainties in pedestrian motion. Simulation results show that the UT-based method achieves accurate collision probability estimation and higher computation efficiency than MC and provides more valuable information concerning collision avoidance than the deterministic methods in the design of a pedestrian collision avoidance system.
DOI: 10.6084/m9.figshare.19726603.v2
title: GLITCH: Replication Package with Code and Datasets (ASE 2022)

description: Replication package with code and datasets accompanying the ASE 2022 paper: "GLITCH: Automated Polyglot Security Smell Detection in Infrastructure as Code" by Nuno Saavedra and João F. Ferreira. <br> Instructions can be found here: https://github.com/sr-lab/GLITCH-ASE22-Replication-Package/blob/ase22-submission/INSTALL.md <br> There is also an archived version of the instructions here: https://zenodo.org/record/6972618
DOI: 10.6084/m9.figshare.4633678.v1
title: dmLT_Fig. 1. Recovery of intact dmLT after incubation in containers

description: Double mutant heat labile (dmLT) adjuvant was prepared at several proposed vaccine dilutions and stability in glass or plastic containers was monitored by dmLT ELISA. dmLT samples were diluted in saline with and without Tween 80 to mimic bedside mixing procedures to dilute dmLT prior to mixing with the candidate vaccine.
DOI: 10.17632/n2jy2hck2n
title: Data and Code for: The Federal Reserve’s Response to the Global Financial Crisis and its Effects: An Interrupted Time-Series Analysis of the Impact of its Quantitative Easing Programs

description: This file contains the data and code for the publication "The Federal Reserve’s Response to the Global Financial Crisis and its Effects: An Interrupted Time-Series Analysis of the Impact of its Quantitative Easing Programs" by A. C. Kamkoum, 2023.
DOI: 10.17632/n8n4s2sv9r
title: whey preteomics 2021.1.10

description: DIA whey proteomics group
DOI: 10.17632/rxbw49rd98
title: Data for: Low-temperature sintering mechanism and Microwave dielectric properties of ZnAl2O4-LMZBS composites

description: The upload file is the experimental data of "Investigating on Low-temperature sintering mechanism and Microwave dielectric properties of ZnAl2O4-LMZBS composites"
DOI: 10.6084/m9.figshare.25990111.v1
title: Germline missense MSH2 VUS - 6

description: Molecular dynamics simulation of the VUS based on the ClinVar database, the simulation is up to 100 ns.
DOI: 10.17632/d82hjm4v6r
title: NekMesh: An open-source high-order mesh generation framework

description: High-order spectral element simulations are now becoming increasingly popular within the computational modelling community, as they offer the potential to deliver increased accuracy at reduced cost compared to traditional low-order codes. However, to support accurate, high-fidelity simulations in complex industrial applications, there is a need to generate curvilinear meshes which robustly and accurately conform to geometrical features. This is, at present, a key challenge within the mesh generation community, with only a few open-source tools able to generate curvilinear meshes for complex geometries. We present NekMesh: an open-source mesh generation package which is designed to enable the generation of valid, high-quality curvilinear meshes of complex, three-dimensional geometries for performing high-order simulations. We outline the software architecture adopted in NekMesh, which uses a pipeline of processing modules to provide a flexible, CAD-independent high-order mesh processing tool, capable of both generating meshes for a wide range of use cases, as well as post-processing linear meshes from a range of input formats for use with high-order simulations. A number of examples in various application areas are presented, with a particular emphasis on challenging aeronautical and fluid dynamics test cases.
DOI: 10.17632/f94329byhk
title: Expanded molecular, biochemical, and statistical analyses of a 2019 toxic cyanobacterial proliferation event in Lady Bird Lake, Austin, Texas

description: Multiple canine deaths and illnesses were reported in the summer of 2019 after dogs swam in the nearshore waters of Red Bud Isle (RBI), an off-leash dog park located on Lady Bird Lake, Austin, Texas. Lady Bird Lake, the last in-line impoundment of the Texas Colorado River in the heart of downtown Austin, is a central attraction to residents, providing miles of hike and bike trails, and pet-friendly parks. Thick cyanobacterial proliferations, arising from the benthos, floating at the surface around RBI were first documented on August 3rd, 2019. Metaphyton mat samples were collected from selected sites starting in August 2019 and concluding in November 2019, when the mats dissipated. Mats and water samples were analyzed for cyanobacterial composition and water quality parameters. Micrographs of intact mats and isolates were documented. Cyanobacterial communities were isolated to unialgal cultures for subsequent DNA isolation for 16S and 23S rRNA barcode sequencing for identification. Targeted toxins were analyzed using RP-HPLC-MS from metaphyton materials. Ordination analyses of water quality conditions during the period of toxic mat presence and the previous 3-year period were carried out to visualize differences in parameters; a direct comparison of water quality concentrations was then applied to confirm what was significantly different during the proliferation period. The following dataset includes raw and processed HPLC data, raw and processed sequencing data, raw data used for the Pearson Correlation non-metric multidimensional scaling (NMDS) analysis, and additional micrographs; results are published in Perri et al. 2024.
DOI: 10.17632/zzy3grv2jk
title: Data for: Robust optimization of the locations and types of multiple wells using CNN based proxy model

description: Reservoir models used in the paper
DOI: 10.17632/hc8jzfh899
title: Fertility and Fertility Preservation Knowledge in Portuguese Women

description: This dataset was used in a study aimed to describe general fertility knowledge and factors affecting fertility, fertility preservation knowledge and attitudes, and the desire to access more information on this topic in a sample of reproductive-age Portuguese women. The sample comprised 257 Portuguese women aged between 18 and 45, single (77.4%) and nulliparous (87.5%). A questionnaire was developed explicitly for this study and disseminated through social media advertisements using an exponential non-discriminative snowball sampling method for data collection. The main reasons mentioned for postponing childbearing were career building/development (35%), financial stability (26.5%), and not having a partner (8.2%). Participants were aware of the impact of ageing, lifestyle, and sexual health factors on fertility but were not well-informed regarding the age range for fertility decline. They reported awareness of fertility preservation techniques (81.7%), but 68.9% showed no interest in using them. Most participants agreed that information about fertility and fertility preservation should be available. However, a meaningful percentage (38.1%) were not interested in having more information. The current study identified that more information regarding fertility and fertility preservation is relevant to ensure that more women can make informed decisions regarding their reproductive life.
DOI: 10.17632/mkx5sb3mnw
title: European National Implementing Measures Dataset

description: European Directives (EUDs) are binding upon Member States as to the results to be achieved, but leave to national authorities the choice of form and methods. Therefore, Member States adopt \textit{ad hoc} National Implementing Measures (NIMs) that mostly reproduce the contents of EUDs and transpose them into domestic legislation. This well-known process is defined as ``legal harmonization'' and consists of the gradual, although ambiguous, approximation of national legal orders as a result of the adoption of European legislation. In order to contribute to the analysis of this phenomenon, we collect a large and unique dataset composed of European and domestic legislative sources, which is an essential requirement to automatically pair EUDs and the corresponding NIMs, in light of their semantic similarity. The first results show the feasibility of the proposed task to discern NIMs from national legislation that does not contribute to implementing EUDs, thus constituting the foundation for a semantic search engine. We believe that our effort can promote future applications and research directions, with the ultimate aim to support traditional legal methodology, facilitate citizens' access to rights, support public administrations, and, more in general, promote democracy and the rule of law in the European Union.
DOI: 10.17632/xg7p7rfrrp
title: High-Resolution Sentinel-2 Images of Brazilian in 2024

description: This dataset contains Sentinel-2 satellite imagery from 2024 for six Brazilian capitals: Belo Horizonte, Rio de Janeiro, Salvador, Porto Alegre, Brasília, and São Paulo. The images were selected and processed for urban analysis purposes.
DOI: 10.17632/xnc4yh4w72
title: Data for: Industry bubbles and unexpected consumption shocks: A cross-sectional explanation of stock returns under recursive preferences

description: We compile raw data from the Datastream database for all stocks traded on the Tokyo Stock Exchange. We use the filters suggested by Griffin et al. (2010) for Datastream series to exclude special purpose vehicles from data. Consequently, our sample comprises 3,866 stocks. We compile all macroeconomic series from the OECD Statistics section. 

Our dataset comprise the following series:

1 Japan_25_Portfolios_MV_PTBV_M: Monthly returns for 25 size-book-to-market equity portfolios, following the Fama and French (1993) methodology.
2 Japan_25_Portfolios_MV_DY_M: Monthly returns for 25 size-dividend yield portfolios, following the Fama and French (1993) methodology.
3 Japan_25_Portfolios_MV_PC_M: Monthly returns for 25 size-price-to-cash flow portfolios, following the Fama and French (1993) methodology.
4 Japan_3 Factors_M: Monthly returns for the portfolios that constitute the three classic Fama-French factors (RMRF, SMB and HML), following the Fama and French (1993) methodology.
5 Japan_5 Factors_M: Monthly returns for the portfolios that constitute the five Fama-French factors (RMRF, SMB, HML, RMW and CMA), following the Fama and French (2015) methodology.
6 Japan_RF_M: Three-month Treasury Bill rate for Japan.
7 Japan_C_Q: Private final consumption expenditure, in national currency and constant prices for Japan.
8 Japan_IK_Q: Investment-capital ratio, following the Cochrane (1991) methodology. We use gross capital formation series for Japan, in national currency, seasonally adjusted. We assume a depreciation rate of 0.1 and no adjustment cost.
9 Japan_DY_ConstrTech_M: Value-weighted dividend yield portfolios for Japanese firms in construction and technology industries, as proxied by two-digit SIC codes 15-17 and 36-48, respectively.
10 Japan_Bubbles_Q: Variation rates of construction and technology bubbles in Japan, as determined by a parameterized version of the bubble term in the Campbell and Shiller (1988) return identity, using the investment-capital ratio as an instrument.
11 Japan_Errors_Q: Residuals that result from the regression of consumption growth on the variation rate of construction and technology bubbles and the lagged consumption growth.

REFERENCES:
Campbell, J. Y., and Shiller, R. J. (1988). The Dividend-Price Ratio and Expectations of Future Dividends and Discount Factors, The Review of Financial Studies, 1, 195-228.
Cochrane, J. H. (1991). Production-Based Asset Pricing and the Link Between Stock Returns and Economic Fluctuations, The Journal of Finance, 46, 209-237.
Fama, E. F. and French, K. R. (1993). Common Risk Factors in the Returns on Stocks and Bonds, Journal of Financial Economics, 33, 3–56.
Fama, E. F. and French, K. R. (2015). A Five-Factor Asset Pricing Model, Journal of Financial Economics, 116, 1-22.
Griffin, J. M., Kelly, P., and Nardari, F. (2010). Do Market Efficiency Measures Yield Correct Inferences? A Comparison of Developed and Emerging Markets, Review of Financial Studies, 23, 3225–3277.
DOI: 10.6084/m9.figshare.8168267.v2
title: Data from: Reliability analysis of fish traits reveals discrepancies among databases

description: Cano‐Barbacil, C., Radinger, J., & García‐Berthou, E. (2020). Reliability analysis of fish traits reveals discrepancies among databases. <em>Freshwater Biology</em>, <em>65</em>(5), 863-877. <strong>https://doi.org/10.1111/fwb.13469</strong> <br> Fish trait data from 19 different data sources of 99 freshwater Iberian fish (native and alien) and consensus database.
DOI: 10.17632/bp7dzg82p6
title: Earthquakes triggered by fluid diffusion and boosted by fault reactivation in Weiyuan, China due to hydraulic fracturing

description: The zip file contains vertical waveform data for a refined earthquake catalog (HypoDD_location.dat) built by Sheng et al. (2022), recorded by a dense seismic array in the Weiyuan shale gas block in China. Each directory includes one earthquake. NEDC_catalog.dat file is the standard catalog, recorded by permanent stations, from National Earthquake Data Center (NEDC) of China. Animation_S2.html and Animation_S3.html files are 3D Javascripts animations of seismicity evolution and b values of the eastern cluster, respectively.
DOI: 10.17632/vcxg5d7rrh
title: Anexo I. Poema los cien lenguajes del niño

description: Anexo I. Poema los cien lenguajes del niño
DOI: 10.17632/9sgpn5mdzs
title: Supplementary Online Repository for Modular Multilevel Converter Hardware and Simulation Comparison

description: Part of the supplementary data of the thesis "Modular Multilevel Converter Hardware and Simulation Comparison", written by Theodor Heath and submitted for the degree of PhD at the University of Manchester in 2019. Uploaded files include printed circuit board schematics and layouts for a number of designs used by the converter hardware prototype and the system code to control the converter hardware prototype using the distributed control architecture described in the thesis. Design files in Altium schdoc. and pcbdoc. and control programs in Verilog and LabVIEW 2016.
DOI: 10.17632/h68fjkrzkz
title: Sociodemographic and obstetric data on stillbirths from a Brazilian social program, 2008-2022

description: This dataset presents sociodemographic and clinical information of pregnant women who suffered stillbirth in the state of Pernambuco covering the period from 2008 to 2022. This data was collected from the Mãe Coruja Pernambucana Program (PMCP), a former social program under the Sistema Único de Saúde (SUS). The PMCP operated in the state of Pernambuco, Brazil and it was active in 105 municipalities, primarily in vulnerable areas of the population. This program monitored mothers and children up to 5 years old, providing health support, educational assistance, and social and family care. 

This dataset contains two CSV files: the "dataset.csv" file contains the pre-processed data set, and the "attributes.csv" file contains information about each attribute.
DOI: 10.17632/pfgfbv3rjx
title: Effect of cell membrane tension on the lifetime and size of mature clathrin-coated pits and their spatial distribution

description: Clarthin coated pits images scanned by SIM on fix spread cells and scanned by TRIF on bottom of living cells