cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jjng2x
title: Occurrence Download

description: A dataset containing 1541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1541 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305398-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smma3p
title: Occurrence Download

description: A dataset containing 698970 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division, National Coral Reef Monitoring Program: Stratified random surveys (StRS) of reef fish in the U.S. Pacific Islands"
 ]
}

 The dataset includes 698970 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008564-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aemxzm
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Bryconamericus carlosi Román-Valencia, 2003)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014156-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.db5xvk
title: Occurrence Download

description: A dataset containing 300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diospyros kaki L.f.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 300 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305379-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k99qc7
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxytropis lasiopoda Bunge"
 ]
}

 The dataset includes 26 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139298-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wdhww
title: Occurrence Download

description: A dataset containing 9037 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echinoderma (Bon) Bon"
 ]
}

 The dataset includes 9037 records from 221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0428255-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9ec8j
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bonamia elliptica (L.B.Sm. & Schub.) Myint & D.B.Ward"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098236-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcfvau
title: Occurrence Download

description: A dataset containing 832 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lemur catta Linnaeus, 1758"
 ]
}

 The dataset includes 832 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0428717-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akhxua
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phemeranthus punae (R.E.Fr.) Eggli & Nyffeler"
 ]
}

 The dataset includes 44 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004510-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/htrcdn
title: Plan de gestion 2019 - 2023 du Lac de La Prade (33) mené par le CEN Nouvelle-Aquitaine-Observations faunistiques fortuites réalisées par le CEN Aquitaine

description: Observations faunistiques fortuites réalisées par par le CEN Aquitaine. Ces observations ont été réalisées hors protocole et hors sessions d'inventaire.
DOI: 10.15468/dl.f5grjv
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acusta despecta (G.B.Sowerby I, 1839)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 145 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305390-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vw4xfa
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bonamia holtii O'Donell"
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098241-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjkchw
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Raorchestes ochlandrae (Gururaja, Dinesh, Palot, Radhakrishnan & Ramachandra, 2007)"
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305411-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5j4atk
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Erythrodontium julaceum (Schwägr.) Paris",
 "Year 1970-2023"
 ]
}

 The dataset includes 107 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015358-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vehgt
title: Occurrence Download

description: A dataset containing 939 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cameroon",
 "TaxonKey is Rhamnaceae"
 ]
}

 The dataset includes 939 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295220-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhpevr
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Stictocardia beraviensis (Vatke) Hallier fil."
 ]
}

 The dataset includes 222 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008559-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zkv5yp
title: Occurrence Download

description: A dataset listing the 12159 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-69.16687 -32.89456,-66.43293 -28.70264,-71.51024 -26.62735,-73.85361 -32.07092,-69.16687 -32.89456))",
 "Geometry POLYGON((-71.19335 -28.23684,-71.53565 -29.20743,-70.5772 -29.34677,-70.31476 -28.55803,-71.19335 -28.23684))"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 12159 records were derived from 554 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011193-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m668qe
title: Occurrence Download

description: A dataset containing 201 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orlitia borneensis Gray, 1873"
 ]
}

 The dataset includes 201 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295223-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7kfyq
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mostacillastrum subauriculatum Al-Shehbaz"
 ]
}

 The dataset includes 108 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012659-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/ucgdqz
title: CardObs : Observations naturalistes issues de l'outil CardObs-EPTBSGL_QDR_2019

description: Inventaire des mollusques aquatiques et terrestres de quelques queues d'étangs des grands lacs réservoirs de Champagne-Ardenne
DOI: 10.15468/dl.56g6xa
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thelypodiopsis wootonii (B.L.Rob.) Rollins"
 ]
}

 The dataset includes 62 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012664-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdmnsx
title: Occurrence Download

description: A dataset containing 2026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Persicaria longiseta (Bruijn) Kitag.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2026 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305382-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.5596755
title: Gene expression and splicing counts from 49 tissues from GTEx v6p genome build hg19 - non-strand specific

description: Dataset description:


49 folders, each corresponding to one tissue from GTEx v6p and containing the following files:



	

	
geneCounts: gene-level counts 
	
	

	
k_j: split counts spanning from one exon to another.
	
	

	
k_theta: non-split counts covering a splice site
	
	

	
n_psi3: total split counts from a given acceptor site
	
	

	
n_psi5: total split counts from a given donor site
	
	

	
n_theta: total split and non-split counts for a given splice site
	
	

	
Sample annotation describing each sample from the dataset
	
	

	
Description file with global information from the dataset
	



The gene counts were originated using the GTF file from release 29 of GENCODE, and the split and non-split counts contain only the annotated junctions from the same release. Statistics are reported only for GENCODE-annotated introns and splice sites, in compliance with the regulations of the GTEx consortium. For a description of the samples, methods, and protocols, see the GTEx publication specified below.


Use: The count matrices are intended to help researchers that are interested in using RNA-Seq data with the purpose of diagnostics. Researchers can merge their own dataset with the downloaded ones, provided the tissue, genome build, strand, and paired-end specifications match. Afterwards, the Detection of RNA outliers Pipeline (DROP)  can be used to compute gene expression and splicing outliers.
Organism: Homo sapiens
Genome assembly: hg19
Gene annotation: gencode29
Strand specific: FALSE
Paired end: TRUE
Protocol: poly(A) enrichment


Contact: Vicente A. Yepez, yepez at in.tum.de; Christian Mertes, mertes at in.tum.de; Julien Gagneur, gagneur at in.tum.de


Citation: Write the following in the "Data availability" section of the manuscript or similar replacing the three citations by the ones from the References section below:




The count matrices for the GTEx samples <cite GTEx publication, see below> were downloaded from Zenodo (doi: 10.5281/zenodo.5596755) and were generated through DROP <cite DROP, see below> using the release 29 of the GENCODE annotation <cite GENCODE, see below>. 



Also, write the following in the Acknowledgements section:
 




The Genotype-Tissue Expression (GTEx) Project was supported by the Common Fund of the Office of the Director of the National Institutes of Health, and by NCI, NHGRI, NHLBI, NIDA, NIMH, and NINDS. The raw data used for the analyses described in this manuscript were obtained from the GTEx Portal on June 12, 2017, under accession number dbGaP  phs00424.v6.p1.
DOI: 10.5281/zenodo.5638707
title: Gene expression and splicing counts from 49 tissues from GTEx v6p genome build hg19 - non-strand specific

description: Dataset description:


49 folders, each corresponding to one tissue from GTEx v6p and containing the following files:



	

	
geneCounts: gene-level counts 
	
	

	
k_j: split counts spanning from one exon to another.
	
	

	
k_theta: non-split counts covering a splice site
	
	

	
n_psi3: total split counts from a given acceptor site
	
	

	
n_psi5: total split counts from a given donor site
	
	

	
n_theta: total split and non-split counts for a given splice site
	
	

	
Sample annotation describing each sample from the dataset
	
	

	
Description file with global information from the dataset
	



The gene counts were originated using the GTF file from release 29 of GENCODE, and the split and non-split counts contain only the annotated junctions from the same release. Statistics are reported only for GENCODE-annotated introns and splice sites, in compliance with the regulations of the GTEx consortium. For a description of the samples, methods, and protocols, see the GTEx publication specified below.


Use: The count matrices are intended to help researchers that are interested in using RNA-Seq data with the purpose of diagnostics. Researchers can merge their own dataset with the downloaded ones, provided the tissue, genome build, strand, and paired-end specifications match. Afterwards, the Detection of RNA outliers Pipeline (DROP)  can be used to compute gene expression and splicing outliers.
Organism: Homo sapiens
Genome assembly: hg19
Gene annotation: gencode29
Strand specific: FALSE
Paired end: TRUE
Protocol: poly(A) enrichment


Contact: Vicente A. Yepez, yepez at in.tum.de; Christian Mertes, mertes at in.tum.de; Julien Gagneur, gagneur at in.tum.de


Citation: Write the following in the "Data availability" section of the manuscript or similar replacing the three citations by the ones from the References section below:




The count matrices for the GTEx samples <cite GTEx publication, see below> were downloaded from Zenodo (doi: 10.5281/zenodo.5596755) and were generated through DROP <cite DROP, see below> using the release 29 of the GENCODE annotation <cite GENCODE, see below>. 



Also, write the following in the Acknowledgements section:
 




The Genotype-Tissue Expression (GTEx) Project was supported by the Common Fund of the Office of the Director of the National Institutes of Health, and by NCI, NHGRI, NHLBI, NIDA, NIMH, and NINDS. The raw data used for the analyses described in this manuscript were obtained from the GTEx Portal on June 12, 2017, under accession number dbGaP  phs00424.v6.p1.
DOI: 10.15468/dl.6hh7f5
title: Occurrence Download

description: A dataset containing 322 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ingerana borealis (Annandale, 1912)"
 ]
}

 The dataset includes 322 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305383-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pt3w3k
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "TaxonKey is Achillea grandifolia Friv."
 ]
}

 The dataset includes 50 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098259-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hywxr9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spiesia longebracteata (Kar. & Kir.) Kuntze"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139305-230530130749713/datasets/export for details.
DOI: 10.15468/dl.z6zwzu
title: Occurrence Download

description: A dataset containing 2458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cynodontium bruntonii (Sm.) Bruch & Schimp., Cynodontium fallax Limpr.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 2458 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238609-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7uw8wp
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Locality is one of (cienaga de la caimanera)",
 "StateProvince is one of (sucre)",
 "TaxonKey is one of (Aves)"
 ]
 }
 ]
}

 The dataset includes 53 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098273-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qnacf5
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cynodontium gracilescens (F.Weber & D.Mohr) Schimp.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 54 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238613-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/vm8cc4
title: (Table 6) Distribution of the large, few-chambered Globigerinelloides species in the Lesches en Diois section
DOI: 10.15468/dl.cxs7kq
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phemeranthus sediformis (Poelln.) Kiger"
 ]
}

 The dataset includes 68 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004512-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ke8u5e
title: Occurrence Download

description: A dataset listing the 47 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is ITA.16.3.26_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 47 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305414-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2b6xbe
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Hemibrycon jabonero Schultz, 1944)"
 ]
}

 The dataset includes 122 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014157-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32n3ch
title: Occurrence Download

description: A dataset containing 2747 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Teramnus uncinatus (L.) Sw."
 ]
}

 The dataset includes 2747 records from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011173-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.