cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pqp3gk
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((0.82725 49.45654,0.85784 49.48789,0.87195 49.52608,0.87195 49.57492,0.86254 49.62753,0.8096 49.64658,0.73432 49.64962,0.6755 49.64125,0.62491 49.6321,0.59903 49.60085,0.57668 49.56196,0.5261 49.52532,0.56374 49.50317,0.57903 49.46878,0.56021 49.44354,0.59903 49.42365,0.66256 49.43819,0.70373 49.51539,0.73079 49.51386,0.76255 49.49706,0.77314 49.47566,0.79666 49.46801,0.82725 49.45654))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 220 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022903-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26124960
title: Ensemble learning-based crop yield estimation: a scalable approach for supporting agricultural statistics

description: Detailed and accurate statistics on crop productivity are key to inform decision-making related to sustainable food production and supply ensuring global food security. However, annual and high-resolution crop yield data provided by official agricultural statistics are generally lacking. Earth observation (EO) imagery, geodata on meteorological and soil conditions, as well as advances in machine learning (ML) provide huge opportunities for model-based crop yield estimation in terms of covering large spatial scales with unprecedented granularity. This study proposes a novel yield estimation approach that is bottom-up scalable from parcel to administrative levels by leveraging ML-ensembles, comprising of six regression estimators (base estimators), and multi-source geodata, including EO imagery. To ensure the approach’s robustness, two ensemble learning techniques are investigated, namely meta-learning through model stacking and majority voting. ML-ensembles were evaluated multi-annually and crop-specifically for three major winter crops, namely winter wheat (WW), winter barley (WB), and winter rapeseed (WR) in two German federal states, covering 140,000 to 155,000 parcels per year. ML-ensembles were evaluated at the parcel and district level for two German federal states against official yield reports, ranging from 2019 to 2022, based on metrics such as coefficient of determination (RSQ) and normalized root mean square error (nRMSE). Overall, the most robustly performing ensemble learning technique was majority voting yielding RSQ and nRMSE values of 0.74, 13.4% for WW, 0.68, 16.9% for WB, and 0.66, 14.1% for WR, respectively, through cross-validation at parcel level. At the district level, majority voting reached RSQ and nRMSE ranges of 0.79–0.89, 7.2–8.1% for WW, 0.80–0.84, 6.0–9.9% for WB, and 0.60–0.78, 6.1–10.4% for WR, respectively. Capitalizing on ensemble learning-based majority voting, examples of unprecedented high-resolution crop yield maps at 1×1km spatial resolution are presented. Implementing a scalable yield estimation approach, as proposed in this study, into crop yield reporting frameworks of public authorities mandated to provide official agricultural statistics would increase the spatial resolution of annually reported yields, eventually covering the entire cropland available. Such unprecedented data products delivered through map services may improve decision-making support for a variety of stakeholders across different spatial scales, ranging from parcel to higher administrative levels.
DOI: 10.6084/m9.figshare.26124960.v1
title: Ensemble learning-based crop yield estimation: a scalable approach for supporting agricultural statistics

description: Detailed and accurate statistics on crop productivity are key to inform decision-making related to sustainable food production and supply ensuring global food security. However, annual and high-resolution crop yield data provided by official agricultural statistics are generally lacking. Earth observation (EO) imagery, geodata on meteorological and soil conditions, as well as advances in machine learning (ML) provide huge opportunities for model-based crop yield estimation in terms of covering large spatial scales with unprecedented granularity. This study proposes a novel yield estimation approach that is bottom-up scalable from parcel to administrative levels by leveraging ML-ensembles, comprising of six regression estimators (base estimators), and multi-source geodata, including EO imagery. To ensure the approach’s robustness, two ensemble learning techniques are investigated, namely meta-learning through model stacking and majority voting. ML-ensembles were evaluated multi-annually and crop-specifically for three major winter crops, namely winter wheat (WW), winter barley (WB), and winter rapeseed (WR) in two German federal states, covering 140,000 to 155,000 parcels per year. ML-ensembles were evaluated at the parcel and district level for two German federal states against official yield reports, ranging from 2019 to 2022, based on metrics such as coefficient of determination (RSQ) and normalized root mean square error (nRMSE). Overall, the most robustly performing ensemble learning technique was majority voting yielding RSQ and nRMSE values of 0.74, 13.4% for WW, 0.68, 16.9% for WB, and 0.66, 14.1% for WR, respectively, through cross-validation at parcel level. At the district level, majority voting reached RSQ and nRMSE ranges of 0.79–0.89, 7.2–8.1% for WW, 0.80–0.84, 6.0–9.9% for WB, and 0.60–0.78, 6.1–10.4% for WR, respectively. Capitalizing on ensemble learning-based majority voting, examples of unprecedented high-resolution crop yield maps at 1×1km spatial resolution are presented. Implementing a scalable yield estimation approach, as proposed in this study, into crop yield reporting frameworks of public authorities mandated to provide official agricultural statistics would increase the spatial resolution of annually reported yields, eventually covering the entire cropland available. Such unprecedented data products delivered through map services may improve decision-making support for a variety of stakeholders across different spatial scales, ranging from parcel to higher administrative levels.
DOI: 10.6084/m9.figshare.26317175
title: Vegetation canopy height shapes bats’ occupancy: a remote sensing approach

description: Anthropogenic activities have significantly altered land cover on a global scale. These changes often have a negative effect on biodiversity limiting the distribution of species. The extent of the effect on species’ distribution depends on the landscape composition and configuration at a local and landscape level. To better understand this effect on a large scale, we evaluated how land cover and vegetation structure shape bat species’ occurrence while considering species’ imperfect detection. We hypothesize that intensification of anthropogenic activities in agriculture, for example, reduces heterogeneity of land cover and vegetation structure, and thereby, limits bat occurrence. To investigate this, we conducted acoustic bat sampling across 59 locations in southern Portugal, each with three spatial replicates. We derived fine-scale vegetation structural metrics by combining spaceborne LiDAR (GEDI) and synthetic aperture radar data (Sentinel-1 and ALOS/PALSAR-2). Additionally, we included land cover metrics and high-resolution climate data from CHELSA. Our findings revealed an important relationship between bat species’ occupancy and vegetation structure, particularly with vegetation canopy height. Moreover, forest and shrubland proportions were the main land cover types influencing bat species responses. All species’ best-ranking occupancy models included at least one climatic variable (temperature, humidity, or potential evapotranspiration), demonstrating the importance of climate when predicting bat distribution. Our acoustic surveys had a species’ detection probability varying from 0.19 to 0.86, and it was influenced by night conditions. These findings underscore the importance of modeling imperfect detection, especially for highly vagile and elusive organisms like bats. Our results demonstrate the effectiveness of using vegetation and landscape metrics derived from high-resolution remote sensing data to model species distribution in the context of biodiversity monitoring and conservation.
DOI: 10.6084/m9.figshare.26317175.v1
title: Vegetation canopy height shapes bats’ occupancy: a remote sensing approach

description: Anthropogenic activities have significantly altered land cover on a global scale. These changes often have a negative effect on biodiversity limiting the distribution of species. The extent of the effect on species’ distribution depends on the landscape composition and configuration at a local and landscape level. To better understand this effect on a large scale, we evaluated how land cover and vegetation structure shape bat species’ occurrence while considering species’ imperfect detection. We hypothesize that intensification of anthropogenic activities in agriculture, for example, reduces heterogeneity of land cover and vegetation structure, and thereby, limits bat occurrence. To investigate this, we conducted acoustic bat sampling across 59 locations in southern Portugal, each with three spatial replicates. We derived fine-scale vegetation structural metrics by combining spaceborne LiDAR (GEDI) and synthetic aperture radar data (Sentinel-1 and ALOS/PALSAR-2). Additionally, we included land cover metrics and high-resolution climate data from CHELSA. Our findings revealed an important relationship between bat species’ occupancy and vegetation structure, particularly with vegetation canopy height. Moreover, forest and shrubland proportions were the main land cover types influencing bat species responses. All species’ best-ranking occupancy models included at least one climatic variable (temperature, humidity, or potential evapotranspiration), demonstrating the importance of climate when predicting bat distribution. Our acoustic surveys had a species’ detection probability varying from 0.19 to 0.86, and it was influenced by night conditions. These findings underscore the importance of modeling imperfect detection, especially for highly vagile and elusive organisms like bats. Our results demonstrate the effectiveness of using vegetation and landscape metrics derived from high-resolution remote sensing data to model species distribution in the context of biodiversity monitoring and conservation.
DOI: 10.6084/m9.figshare.27937928
title: Assessment of time-series-derived no-flood references for sar-based Bayesian flood mapping

description: The systematic mapping of flood events with Synthetic Aperture Radar (SAR) data is an area of growing importance. One global flood mapping algorithm utilized within the Copernicus Emergency Management Service is based upon a Bayesian Inference model that compares a SAR image to a simulated reference image representing no-flood conditions. This no-flood reference image is at present generated using a harmonic model trained using historic time series, thereby producing a backscatter image representing mean seasonal conditions. One known weakness of this approach is that it cannot account for changing environmental conditions from year to year, potentially causing an overestimation of flood extent during dry periods, snow and frost, or other effects causing lower-than normal backscatter. To minimize this detrimental effect, we introduce an exponential filter to estimate the no-flood reference image by weighting the most recent backscatter observations according to their time difference to the current SAR acquisition. We compare the performance of the new exponential filter model against the harmonic model using a novel time-series flood mapping assessment approach. First, we assess their predictions against the actual SAR image time series for the year 2023. Then, we analyze the false positive rate of the corresponding flood maps generated to ensure the robustness of the automated algorithm outside of flood events. Furthermore, we perform qualitative and quantitative analyses of flood maps matching with semi-automatic results from Copernicus Emergency Management Services and Sentinel Asia as a reference. Our time-series analysis confirms increased false positive rates due to well-known environmental drivers and highlights issues with agricultural overestimation. In this regard, the time-series comparisons of the no-flood reference models show a clear improvement in the TU Wien algorithm with the exponential filter, effectively reducing false positive rates on non-flooded scenes in most study sites. The exponential filter performed better than the harmonic model in most flooded scenes, where sites show generally improved Critical Success Index and User’s accuracy. However, the exponential filter model has difficulties with sites with prolonged floods in the time series, requiring further development. Overall, the exponential filter no-flood reference model shows great promise for improved global near-real-time flood mapping.
DOI: 10.6084/m9.figshare.27937928.v2
title: Assessment of time-series-derived no-flood references for sar-based Bayesian flood mapping

description: The systematic mapping of flood events with Synthetic Aperture Radar (SAR) data is an area of growing importance. One global flood mapping algorithm utilized within the Copernicus Emergency Management Service is based upon a Bayesian Inference model that compares a SAR image to a simulated reference image representing no-flood conditions. This no-flood reference image is at present generated using a harmonic model trained using historic time series, thereby producing a backscatter image representing mean seasonal conditions. One known weakness of this approach is that it cannot account for changing environmental conditions from year to year, potentially causing an overestimation of flood extent during dry periods, snow and frost, or other effects causing lower-than normal backscatter. To minimize this detrimental effect, we introduce an exponential filter to estimate the no-flood reference image by weighting the most recent backscatter observations according to their time difference to the current SAR acquisition. We compare the performance of the new exponential filter model against the harmonic model using a novel time-series flood mapping assessment approach. First, we assess their predictions against the actual SAR image time series for the year 2023. Then, we analyze the false positive rate of the corresponding flood maps generated to ensure the robustness of the automated algorithm outside of flood events. Furthermore, we perform qualitative and quantitative analyses of flood maps matching with semi-automatic results from Copernicus Emergency Management Services and Sentinel Asia as a reference. Our time-series analysis confirms increased false positive rates due to well-known environmental drivers and highlights issues with agricultural overestimation. In this regard, the time-series comparisons of the no-flood reference models show a clear improvement in the TU Wien algorithm with the exponential filter, effectively reducing false positive rates on non-flooded scenes in most study sites. The exponential filter performed better than the harmonic model in most flooded scenes, where sites show generally improved Critical Success Index and User’s accuracy. However, the exponential filter model has difficulties with sites with prolonged floods in the time series, requiring further development. Overall, the exponential filter no-flood reference model shows great promise for improved global near-real-time flood mapping.
DOI: 10.5281/zenodo.11221750
title: Supported data for manuscript "Can LLM-Augmented autonomous agents cooperate?, An evaluation of their cooperative capabilities through Melting Pot"

description: The repository data corresponds to the manuscript titled "Can LLM-Augmented Autonomous Agents Cooperate? An Evaluation of Their Cooperative Capabilities through Melting Pot," submitted to the Artificial Intelligence Journal.

This data encompasses a series of experiments conducted with Large Language Model-Augmented Autonomous Agents (LAAs) as implemented in the "Cooperative Agents" repository [add link], utilizing the Commons Harvest substrate from the Melting Pot framework.

Each experiment consists of 10 simulations, with summarized metrics, graphs, and CSV data provided for each.

In every simulation, each game episode sees the participation of a predetermined number of LLM agents and bots. The LLM agents each perform a high-level action in their turn, continuing until all three agents have completed their actions. Concurrently, the bots move continuously, executing a move for every two moves made by any agent (a high-level action typically involves multiple movements). Each simulation concludes either after reaching a preset maximum number of rounds (usually 100) or prematurely if all apples in the environment are consumed. We extract a series of indicators and metrics from each simulation to assess the individual and cooperative performance of the agents.
DOI: 10.6084/m9.figshare.27937928.v1
title: Assessment of time-series-derived no-flood references for sar-based Bayesian flood mapping

description: The systematic mapping of flood events with Synthetic Aperture Radar (SAR) data is an area of growing importance. One global flood mapping algorithm utilized within the Copernicus Emergency Management Service is based upon a Bayesian Inference model that compares a SAR image to a simulated reference image representing no-flood conditions. This no-flood reference image is at present generated using a harmonic model trained using historic time series, thereby producing a backscatter image representing mean seasonal conditions. One known weakness of this approach is that it cannot account for changing environmental conditions from year to year, potentially causing an overestimation of flood extent during dry periods, snow and frost, or other effects causing lower-than normal backscatter. To minimize this detrimental effect, we introduce an exponential filter to estimate the no-flood reference image by weighting the most recent backscatter observations according to their time difference to the current SAR acquisition. We compare the performance of the new exponential filter model against the harmonic model using a novel time-series flood mapping assessment approach. First, we assess their predictions against the actual SAR image time series for the year 2023. Then, we analyze the false positive rate of the corresponding flood maps generated to ensure the robustness of the automated algorithm outside of flood events. Furthermore, we perform qualitative and quantitative analyses of flood maps matching with semi-automatic results from Copernicus Emergency Management Services and Sentinel Asia as a reference. Our time-series analysis confirms increased false positive rates due to well-known environmental drivers and highlights issues with agricultural overestimation. In this regard, the time-series comparisons of the no-flood reference models show a clear improvement in the TU Wien algorithm with the exponential filter, effectively reducing false positive rates on non-flooded scenes in most study sites. The exponential filter performed better than the harmonic model in most flooded scenes, where sites show generally improved Critical Success Index and User’s accuracy. However, the exponential filter model has difficulties with sites with prolonged floods in the time series, requiring further development. Overall, the exponential filter no-flood reference model shows great promise for improved global near-real-time flood mapping.
DOI: 10.15468/dl.eeza5h
title: Occurrence Download

description: A dataset containing 8926 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (c98a8d0d-cab2-4506-8c0f-c91a5e4996b9, 09a9c196-cb5b-4fa1-afc2-3499b868b225, 5ed21d03-f836-45bd-a554-0a4791108798)",
 "TaxonKey is Cyclopterus lumpus Linnaeus, 1758",
 "Year 1955-2024"
 ]
}

 The dataset includes 8926 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022904-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26036111
title: An automatic rice mapping method based on an integrated time-series gradient boosting tree using GF-6 and sentinel-2 images

description: Timely and accurate mapping of paddy rice cultivation based on remote sensing technology is crucial and valuable for ensuring food security and sustainable environmental management. In most relevant studies, rice mapping was conducted using time-series images, but conventional rice mapping methods are not specifically designed for time-series data, making it difficult to extract the deep information contained in these data. To address these problems, in this paper, an automatic rice mapping method based on an integrated time-series gradient boosting tree (Auto-ITSGBT) is proposed using GF-6 WFV and Sentinel-2 MSI data. This method accounts for the local and overall shape features of time-series curves, and fully exploits the information related to phenological characteristics between time-series data. The proposed rice mapping method is tested and validated in three typical rice-producing areas, which are located in different provinces of China characterized by diverse climate conditions, planting times or topographies. The results show that the overall accuracy and Kappa coefficient of the method exceeded 95% and 0.93, respectively, at all study sites, respectively. Our method performs better than the existing competing methods, with an overall accuracy improvement of 2% to 4%. To identify the rice planting areas as early as possible, rice mapping was conducted by reducing the number of images one by one. The rice distribution map was obtained in mid-July with an overall accuracy of at least 90%, thus obtaining a spatial distribution map of rice with high accuracy before harvesting.
DOI: 10.6084/m9.figshare.26036111.v1
title: An automatic rice mapping method based on an integrated time-series gradient boosting tree using GF-6 and sentinel-2 images

description: Timely and accurate mapping of paddy rice cultivation based on remote sensing technology is crucial and valuable for ensuring food security and sustainable environmental management. In most relevant studies, rice mapping was conducted using time-series images, but conventional rice mapping methods are not specifically designed for time-series data, making it difficult to extract the deep information contained in these data. To address these problems, in this paper, an automatic rice mapping method based on an integrated time-series gradient boosting tree (Auto-ITSGBT) is proposed using GF-6 WFV and Sentinel-2 MSI data. This method accounts for the local and overall shape features of time-series curves, and fully exploits the information related to phenological characteristics between time-series data. The proposed rice mapping method is tested and validated in three typical rice-producing areas, which are located in different provinces of China characterized by diverse climate conditions, planting times or topographies. The results show that the overall accuracy and Kappa coefficient of the method exceeded 95% and 0.93, respectively, at all study sites, respectively. Our method performs better than the existing competing methods, with an overall accuracy improvement of 2% to 4%. To identify the rice planting areas as early as possible, rice mapping was conducted by reducing the number of images one by one. The rice distribution map was obtained in mid-July with an overall accuracy of at least 90%, thus obtaining a spatial distribution map of rice with high accuracy before harvesting.