cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5005508.v1
title: Spruyt & De Houwer (submitted). On the automaticity of relational stimulus processing: Experiment 1

description: Zip folder with raw data files of Experiment 1
DOI: 10.6084/m9.figshare.5005487
title: Hydrological modelling of the Vistula and Odra river basins using SWAT

description: This paper presents a large-scale application of the SWAT model for water balance and natural streamflow simulation in the entire basins of the Vistula and the Odra, covering most of the territory of Poland. A tailored calibration approach was designed to achieve satisfactory goodness-of-fit across a range of catchment sizes. Model calibration and evaluation driven by high-resolution climate data showed overall good behaviour for 80 benchmark catchments divided into eight clusters, and spatial evaluation for 30 gauges showed that the designed regionalization scheme performed well (median KGE of 0.76). Basin-averaged estimates of blue and green water flow and green water storage estimated using the calibrated model were 185, 517 and 206 mm, respectively. This study provides a basis for future work, such as assessing climate change impacts on hydrology, assessing flow alterations, and water quality simulation. The model output is publicly available through an online research data archive (doi:10.4121/uuid:b8ab4f5f-f692-4c93-a910-2947aea28f42).<b>EDITOR</b> A. Castellarin<b>ASSOCIATE EDITOR</b> G. Thirel <b>EDITOR</b> A. Castellarin <b>ASSOCIATE EDITOR</b> G. Thirel
DOI: 10.6084/m9.figshare.5005487.v1
title: Hydrological modelling of the Vistula and Odra river basins using SWAT

description: This paper presents a large-scale application of the SWAT model for water balance and natural streamflow simulation in the entire basins of the Vistula and the Odra, covering most of the territory of Poland. A tailored calibration approach was designed to achieve satisfactory goodness-of-fit across a range of catchment sizes. Model calibration and evaluation driven by high-resolution climate data showed overall good behaviour for 80 benchmark catchments divided into eight clusters, and spatial evaluation for 30 gauges showed that the designed regionalization scheme performed well (median KGE of 0.76). Basin-averaged estimates of blue and green water flow and green water storage estimated using the calibrated model were 185, 517 and 206 mm, respectively. This study provides a basis for future work, such as assessing climate change impacts on hydrology, assessing flow alterations, and water quality simulation. The model output is publicly available through an online research data archive (doi:10.4121/uuid:b8ab4f5f-f692-4c93-a910-2947aea28f42).<b>EDITOR</b> A. Castellarin; <b>ASSOCIATE EDITOR</b> G. Thirel <b>EDITOR</b> A. Castellarin; <b>ASSOCIATE EDITOR</b> G. Thirel
DOI: 10.6084/m9.figshare.5005487.v2
title: Hydrological modelling of the Vistula and Odra river basins using SWAT

description: This paper presents a large-scale application of the SWAT model for water balance and natural streamflow simulation in the entire basins of the Vistula and the Odra, covering most of the territory of Poland. A tailored calibration approach was designed to achieve satisfactory goodness-of-fit across a range of catchment sizes. Model calibration and evaluation driven by high-resolution climate data showed overall good behaviour for 80 benchmark catchments divided into eight clusters, and spatial evaluation for 30 gauges showed that the designed regionalization scheme performed well (median KGE of 0.76). Basin-averaged estimates of blue and green water flow and green water storage estimated using the calibrated model were 185, 517 and 206 mm, respectively. This study provides a basis for future work, such as assessing climate change impacts on hydrology, assessing flow alterations, and water quality simulation. The model output is publicly available through an online research data archive (doi:10.4121/uuid:b8ab4f5f-f692-4c93-a910-2947aea28f42).<b>EDITOR</b> A. Castellarin<b>ASSOCIATE EDITOR</b> G. Thirel <b>EDITOR</b> A. Castellarin <b>ASSOCIATE EDITOR</b> G. Thirel
DOI: 10.6084/m9.figshare.5005475
title: Tracking Childhood Height of Small for Gestational Age Infants in Ireland

description: Introduction<br>Small for gestational age (SGA) defines infants whose birth weight or crown-heel length is 2 standard deviations (SDs) below the mean for their appropriate gestational age (AGA). Approximately 3-5% of neonates are born SGA. This cohort is estimated to account for 1 in 5 children (and adults) who are short in stature. SGA is associated with poor outcomes in terms of growth and metabolism. Understanding population distributions of growth outcomes will aid consideration of treatments such as growth hormone in a paediatric population. Data from the ‘Growing Up in Ireland’ (GUI) longitudinal study is explored.<br><br>Materials and MethodsBirth height was standardised according to gestational age and sex. Childhood growth measures were standardised for sex. Distributions of outcome variables were examined using robust graphical methods. Univariate poisson regression was employed to examine the relative risk of SGA on quintiles of growth outcomes at 9 months, 3 and 5 years of age. A sex-adjusted height below two standard deviations was identified as a significant cut-score from the literature. Univariate logistic regression was employed to examine the likelihood of this outcome in the SGA group. R statistical programming was used for analysis.<br>ResultsThe GUI cohort consisted of 12,121 children in Ireland, 56% of whom were female. Those born SGA were 29%, 16% and 12% more likely to fall in a height decile below that of their average for gestational age peers at 9 months, 3 and 5 years respectively (significant at an alpha level of 0.95). At 5 years of age the SGA group demonstrated a likelihood of falling 2 SD below the sex-adjusted mean, five-fold over their peers (OR: 5.40, 95% CI: 2.86, 10.20). Quantile analysis was undertaken and graphical visualisations were plotted to aid interpretation of growth outcomes for the SGA group in this dataset. A sankey diagram (figure 1) is used to track the distribution of participants with SGA across quintiles of height through 5 years of age.<br><br>ConclusionSmall for Gestational Age neonates represent between 3 to 5% of a given population. In Ireland, data from the GUI study demonstrated a 3.5% prevalence. This analysis suggest that subgroups of SGA infants may exhibit worse growth outcomes than their population matched peers. Future analysis may employ machine learning techniques at a population level to identify those who may benefit from growth hormone therapy.
DOI: 10.6084/m9.figshare.5005475.v4
title: Tracking Childhood Height of Small for Gestational Age Infants in Ireland

description: Introduction<br>Small for gestational age (SGA) defines infants whose birth weight or crown-heel length is 2 standard deviations (SDs) below the mean for their appropriate gestational age (AGA). Approximately 3-5% of neonates are born SGA. This cohort is estimated to account for 1 in 5 children (and adults) who are short in stature. SGA is associated with poor outcomes in terms of growth and metabolism. Understanding population distributions of growth outcomes will aid consideration of treatments such as growth hormone in a paediatric population. Data from the ‘Growing Up in Ireland’ (GUI) longitudinal study is explored.<br><br>Materials and MethodsBirth height was standardised according to gestational age and sex. Childhood growth measures were standardised for sex. Distributions of outcome variables were examined using robust graphical methods. Univariate poisson regression was employed to examine the relative risk of SGA on quintiles of growth outcomes at 9 months, 3 and 5 years of age. A sex-adjusted height below two standard deviations was identified as a significant cut-score from the literature. Univariate logistic regression was employed to examine the likelihood of this outcome in the SGA group. R statistical programming was used for analysis.<br>ResultsThe GUI cohort consisted of 12,121 children in Ireland, 56% of whom were female. Those born SGA were 29%, 16% and 12% more likely to fall in a height decile below that of their average for gestational age peers at 9 months, 3 and 5 years respectively (significant at an alpha level of 0.95). At 5 years of age the SGA group demonstrated a likelihood of falling 2 SD below the sex-adjusted mean, five-fold over their peers (OR: 5.40, 95% CI: 2.86, 10.20). Quantile analysis was undertaken and graphical visualisations were plotted to aid interpretation of growth outcomes for the SGA group in this dataset. A sankey diagram (figure 1) is used to track the distribution of participants with SGA across quintiles of height through 5 years of age.<br><br>ConclusionSmall for Gestational Age neonates represent between 3 to 5% of a given population. In Ireland, data from the GUI study demonstrated a 3.5% prevalence. This analysis suggest that subgroups of SGA infants may exhibit worse growth outcomes than their population matched peers. Future analysis may employ machine learning techniques at a population level to identify those who may benefit from growth hormone therapy.
DOI: 10.6084/m9.figshare.5005415
title: Parasite-microbiota interactions potentially affect intestinal communities in wild mammals

description: Data set for the "Parasite-microbiota interactions potentially affect intestinal communities in wild mammals" published in Journal of Animal Ecology (see full reference).<br>
DOI: 10.6084/m9.figshare.5005409
title: Supplementary information of Lopez-Escardo et al. 2017 J Eukaryot Microbiol

description: Supplementary information for the Manuscript submitted to Journal of Eukaryotic Microbiology; López-Escardó et. al. 2017 "<i>Parvularia atlantis Gen. et Sp. Nov., a nucleariid filose amoeba (Holomycota, Opisthokonta)</i>". It includes the alignment, the phylogenetic inferences plus videos of <i>P.atlantis.</i>
DOI: 10.6084/m9.figshare.5005415.v1
title: Parasite-microbiota interactions potentially affect intestinal communities in wild mammals

description: Data set for the "Parasite-microbiota interactions potentially affect intestinal communities in wild mammals" published in Journal of Animal Ecology (see full reference).<br>
DOI: 10.6084/m9.figshare.5005346
title: sysBio v1.0.0

description: A first version of sysBio, an open source package for modeling and simulation of biological systems. It provides ability to convert reactions into ordinary differential equations (ODEs) and ability to solve them via numerical integration or stochastic simulation.
DOI: 10.6084/m9.figshare.5005409.v3
title: Supplementary information of Lopez-Escardo et al. 2017 J Eukaryot Microbiol

description: Supplementary information for the Manuscript submitted to Journal of Eukaryotic Microbiology; López-Escardó et. al. 2017 "<i>Parvularia atlantis Gen. et Sp. Nov., a nucleariid filose amoeba (Holomycota, Opisthokonta)</i>". It includes the alignment, the phylogenetic inferences plus videos of <i>P.atlantis.</i>
DOI: 10.6084/m9.figshare.5005331
title: Tunable two-dimensional interfacial coupling in molecular heterostructures

description: These data correspond to the manuscript of nature communication article No. NCOMMS-16-21023B
DOI: 10.6084/m9.figshare.5005328
title: Time-series monitoring of water–rock interactions in mine wastes, Macraes gold mine, New Zealand

description: The main tailings impoundment at the Macraes mine was active for 23 years until it was decommissioned in 2013. Water compositions in the tailings complex were closely monitored for 20 years, providing a time series of compositional changes during the interaction between mine waters, sulphidic ore (pyrite and arsenopyrite) and greenschist facies schist host rocks. Most waters had circumneutral pH because of abundant (2–10%) calcite in host rocks. Relict Fe<sup>2+</sup> caused a temporary pH decrease before re-neutralisation. Chlorite, albite and muscovite partially altered to kaolinite, smectites and illite. Dissolved sulphate reached as high as 8000 mg/L, but this was partially attenuated by the precipitation of gypsum in the tailings complex, while the alkalinity (as dissolved ) rose by three orders of magnitude in parallel with the increase in pH. Dissolved As decreased by six orders of magnitude, to &lt; 0.01 mg/L, between the processing plant and the groundwater system below the tailings complex. Dissolved sulphate plumes emanate from tailings and waste rock piles, but are diluted downstream.
DOI: 10.6084/m9.figshare.5005328.v1
title: Time-series monitoring of water–rock interactions in mine wastes, Macraes gold mine, New Zealand

description: The main tailings impoundment at the Macraes mine was active for 23 years until it was decommissioned in 2013. Water compositions in the tailings complex were closely monitored for 20 years, providing a time series of compositional changes during the interaction between mine waters, sulphidic ore (pyrite and arsenopyrite) and greenschist facies schist host rocks. Most waters had circumneutral pH because of abundant (2–10%) calcite in host rocks. Relict Fe<sup>2+</sup> caused a temporary pH decrease before re-neutralisation. Chlorite, albite and muscovite partially altered to kaolinite, smectites and illite. Dissolved sulphate reached as high as 8000 mg/L, but this was partially attenuated by the precipitation of gypsum in the tailings complex, while the alkalinity (as dissolved ) rose by three orders of magnitude in parallel with the increase in pH. Dissolved As decreased by six orders of magnitude, to &lt; 0.01 mg/L, between the processing plant and the groundwater system below the tailings complex. Dissolved sulphate plumes emanate from tailings and waste rock piles, but are diluted downstream.
DOI: 10.6084/m9.figshare.5005331.v1
title: Tunable two-dimensional interfacial coupling in molecular heterostructures

description: These data correspond to the manuscript of nature communication article No. NCOMMS-16-21023B
DOI: 10.6084/m9.figshare.5005280
title: Data from: High growth temperatures and high soil nitrogen do not alter differences in CO2 assimilation between invasive Phalaris arundinacea (reed canarygrass) and Carex stricta (tussock sedge)

description: Data used in the analysis for Waring and Holaday, 2017. High growth temperatures and high soil nitrogen do not alter differences in CO<sub>2 </sub>assimilation between invasive <i>Phalaris arundinacea</i> (Poaceae; reed canary grass) and <i>Carex stricta </i>(Cyperaceae, tussock sedge). American Journal of Botany (https://doi.org/10.3732/ajb.1600339)<br><br>DatafromIN2012 is the data collected in 2012 at two field sites in north central IN, USA (41.19°N and 86.29°W). <br>DatafromIN2010_metadata is the metadata for the field data from this paper<br>GrowthChamberData is the data collected in the growth chambers at Texas Tech University<br>GrowthChamberMetadata is the corresponding metadata for the data collected in the growth chambers
DOI: 10.6084/m9.figshare.5005289
title: DACT: Dataset of Annotated Car Trajectories

description: <b>DACT </b>contains two subsets of annotated car trajectories data. The dataset contains <b>50 </b>trajectories which cover about <b>13 </b>hours of driving data. In DACT, we manually specified <b>significant </b>driving patterns by using an interactive framework. A significant driving pattern can be anything like a <i>turn</i>, s<i>peed-up</i>, <i>slow-down</i>, etc. The annotation process consists of a crowd-sourcing task followed by comprehensive aggregation phases. The aggregation is done by two different strategies: Strict and Easy. For the first one, we used some strict constraints to aggregate crowd-sourcing results, while we used flexible constraints to generate the second subset of DACT. More information about this dataset may be find here: https://arxiv.org/abs/1705.05219 .Please cite this paper "<b>Trajectory Annotation by Discovering Driving Patterns (UrbanGIS'17</b><b>)</b>", available at https://dl.acm.org/citation.cfm?doid=3152178.3152184, if you want to use this dataset.
DOI: 10.6084/m9.figshare.5005280.v1
title: Data from: High growth temperatures and high soil nitrogen do not alter differences in CO2 assimilation between invasive Phalaris arundinacea (reed canarygrass) and Carex stricta (tussock sedge)

description: Data used in the analysis for Waring and Holaday, 2017. High growth temperatures and high soil nitrogen do not alter differences in CO<sub>2 </sub>assimilation between invasive <i>Phalaris arundinacea</i> (Poaceae; reed canary grass) and <i>Carex stricta </i>(Cyperaceae, tussock sedge). American Journal of Botany (https://doi.org/10.3732/ajb.1600339)<br><br>DatafromIN2012 is the data collected in 2012 at two field sites in north central IN, USA (41.19°N and 86.29°W). <br>DatafromIN2010_metadata is the metadata for the field data from this paper<br>GrowthChamberData is the data collected in the growth chambers at Texas Tech University<br>GrowthChamberMetadata is the corresponding metadata for the data collected in the growth chambers
DOI: 10.6084/m9.figshare.5005265
title: Yarrowia lipolytica non-hyphal mutant RNAseq

description: Differential expression analysis of smooth-33 mutant (FKP514) and its control strain (FKP391).
DOI: 10.6084/m9.figshare.5005262
title: Body weight and basal diameter

description: Basal diameter (in mm) and body weight (in grams) of barnacles used to assess the relationship between those variables
DOI: 10.6084/m9.figshare.5005259
title: Morphological measurements

description: Morphological measurements (in mm) and collecting information of barnacles from the East coast of the USA and Gulf of Mexico used in the morphological analyses<br>
DOI: 10.6084/m9.figshare.5005262.v1
title: Body weight and basal diameter

description: Basal diameter (in mm) and body weight (in grams) of barnacles used to assess the relationship between those variables
DOI: 10.6084/m9.figshare.5005253
title: Dog and bird tracks in Mud: various sizes and depths

description: Really interesting track surface containing deep and shallow dog footprints, as well as small and large bird tracks on a soft but mud-cracked surface. From Wirral, UK.Photogrammetric model made using COLMAP, mesh and texture in Meshlab.*.obj: model<br>*.mtl: Material file*.png: Texture file*.zip original photos
DOI: 10.6084/m9.figshare.5005256
title: Microsatellite alleles and collecting information

description: The dataset contains allele calls for all individuals used in the analyses, and associated collecting information<br>Microsatellite loci names are Ctest7, Ctest9, Ctest10, Ctest11, Ctest12, Ctest16, Ctest18, Ctest31, Ctest 32, Ctest36, Ctest47<br>Microsatellite allele calls are diploid. Each allele is denoted by three digits, and both alleles are in the same cell, without separator. The numbers represent the DNA fragment length
DOI: 10.6084/m9.figshare.5005241
title: backup_linklion2_final3.sql

description: Database from the project "Where is my URI?"
DOI: 10.6084/m9.figshare.5005259.v1
title: Morphological measurements

description: Morphological measurements (in mm) and collecting information of barnacles from the East coast of the USA and Gulf of Mexico used in the morphological analyses<br>
DOI: 10.6084/m9.figshare.5005241.v1
title: backup_linklion2_final3.sql

description: Database from the project "Where is my URI?"
DOI: 10.6084/m9.figshare.12906245
title: test

description: test
DOI: 10.6084/m9.figshare.12906245.v1
title: test

description: test
DOI: 10.6084/m9.figshare.5005004
title: Validating Regulatory Predictions with Mutant Fitness Data

description: Code and data for "Validating Regulatory Predictions with Mutant Fitness Data". The fitness data is taken from doi: 10.1101/072470<br>
DOI: 10.6084/m9.figshare.5005007
title: Yale Coflow Burner Information and CAD Drawings

description: This set of files contains CAD drawings and other information for the Yale Coflow Burner, which is a specific burner for generating coflow nonpremixed flames that has been used extensively by researchers at Yale and other institutions. The goal of this fileset is to allow researchers around the world to construct burners that are all identical to the original one so that measured results can be directly compared. The burner is also designed to have well-defined boundary conditions so that the experimental results can also be simulated computationally. Several datasets measured in this burner have been adopted as canonical modeling targets by the International Sooting Flame Workshop. For more information, see the websites listed under “references”.
DOI: 10.6084/m9.figshare.5004998
title: 2016 10 31 Field Notes

description: Field notes including image and/or video records.<br>Project order 70a
DOI: 10.6084/m9.figshare.5005004.v1
title: Validating Regulatory Predictions with Mutant Fitness Data

description: Code and data for "Validating Regulatory Predictions with Mutant Fitness Data". The fitness data is taken from doi: 10.1101/072470<br>
DOI: 10.6084/m9.figshare.5004998.v1
title: 2016 10 31 Field Notes

description: Field notes including image and/or video records.<br>Project order 70a
DOI: 10.6084/m9.figshare.5004956
title: Corrupting Cooperation and How Anti-Corruption Strategies May Backfire Data

description: Dataset accompanying Muthukrishna, Francois, Pourahmadi & Henrich (2017) Corrupting Cooperation and How Anti-Corruption Strategies May Backfire. <i>Nature Human Behaviour.</i>
DOI: 10.6084/m9.figshare.5004944
title: Original search strategy for prosocial meta-analysis.docx

description: Original search strategy for "Does prosocial behavior increase well-being in controlled experiments systematic review and a meta-analysis" Prospero protocol
DOI: 10.6084/m9.figshare.5004911
title: C. truncatum transcriptome assembly

description: The transcriptome assembly of Colletotrichum truncatum obtained through RNA-seq of 5 different developmental stages in vitro and in planta. The reads were assembled using Trinity in de novo and genome guided mode, and were refined using Program to Assemble Spliced Alignments (PASA).
DOI: 10.6084/m9.figshare.5004944.v1
title: Original search strategy for prosocial meta-analysis.docx

description: Original search strategy for "Does prosocial behavior increase well-being in controlled experiments systematic review and a meta-analysis" Prospero protocol
DOI: 10.6084/m9.figshare.5004911.v1
title: C. truncatum transcriptome assembly

description: The transcriptome assembly of Colletotrichum truncatum obtained through RNA-seq of 5 different developmental stages in vitro and in planta. The reads were assembled using Trinity in de novo and genome guided mode, and were refined using Program to Assemble Spliced Alignments (PASA).