cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25504/fairsharing.tke3y2
title: FAIRsharing record for: Drug Target Ontology
title: DTO

description: This FAIRsharing record describes:  Drug Target Ontology (DTO) is developed as a reference for drug targets with the longer-term goal to create a community standard that will facilitate the integration of diverse drug discovery information from numerous heterogeneous resources. The first version of the DTO consists of asserted class hierarchies of the four IDG protein families, GPCRs, kinases, ion channels, and nuclear hormone receptors. Protein classes are linked to tissue and disease via different levels of confidence. DTO also contains drug target development classifications, a large collection of cell lines from the LINCS project and relevant cell-disease and cell-tissue relations. DTO is modeled in OWL2-DL to enable further classification by inference reasoning and SPARQL queries. DTO is implemented following a modularization approach. DTO will serve as the organizational framework for drug targets in the IDG PHAROS User Interface Portal (https://pharos.nih.gov).
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.zkwslo
title: FAIRsharing record for: Animal Health Ontology for Livestock
title: AHOL

description: This FAIRsharing record describes:  The AHOL ontology (Animal Health Ontology for Livestock) was built collaboratively within a network of experts in the livestock health field, in order to describe production diseases. Its structure is based on the type of disease: communicable, non communicable, genetic, metabolic, physical or psychological. The properties of each disease are related to associated symptoms (the expression of a phenotypical character), the affected organism (livestock, poultry, mammals, fishes) or the one causing the disease (virus, bacteria, fungus, parasite).
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.bbqbsw
title: FAIRsharing record for: Crossref Metadata Deposit Schema
title: null

description: This FAIRsharing record describes:  The Crossref Metadata Deposit Schema is a schema designed to enforce a standardized metadata format on research content stored within Crossref. This schema supports a range of different content types and categories, including descriptive (bibliographic), administrative and structural. It follows the ISO/IEC 11179 Metadata Registry (MDR) standard, which specifies a schema for recording both the meaning and technical structure of the data for unambiguous usage by humans and computers.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.pktgc6
title: FAIRsharing record for: Neuro Behavior Ontology
title: NBO

description: This FAIRsharing record describes:  The Neurobehavior Ontology (NBO) consists of two main components, an ontology of behavioral processes and an ontology of behavioral phenotypes. The behavioral process branch of NBO contains a classification of behavior processes complementing and extending GO’s process ontology. The behavior phenotype branch of NBO consists of a classification of both normal and abnormal behavioral characteristics of organisms .
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.xvfqac
title: FAIRsharing record for: Open Databases Integration for Materials Design
title: OPTIMADE

description: This FAIRsharing record describes:  Designing new materials suitable for specific applications is a long, complex, and costly process. Researchers think of new ideas based on intuition and experience. Their synthesis and evaluation require a tremendous amount of trial and error. In the last few years, there has been a major game change in materials design. Thanks to the exponential growth of computer power and the development of robust first-principles electronic structure codes, it has become possible to perform large sets of calculations automatically. This is the burgeoning area of high-throughput ab initio computation. Such calculations have been used to create large databases containing the calculated properties of existing and hypothetical materials, many of which have appeared online: - the AFLOW distributed materials property repository - the Harvard Clean Energy Project Database - the Materials Cloud - the Materials Project - the NoMaD (Novel Materials Discovery) Repository - the Open Quantum Materials Database - the Computational Materials Repository - the Data Catalyst Genome - the Materials Platform for Data Science - the Joint Automated Repository for Various Integrated Simulations … The Open Databases Integration for Materials Design (OPTIMADE) consortium aims to make materials databases interoperational by developing a common REST API.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.7ti9my
title: FAIRsharing record for: BACPAC Biobehavioral Research Psychosocial Questionnaires and QST Recommendations
title: null

description: This FAIRsharing record describes:  This document includes recommendations for the following domains: Psychosocial Recommendations, Social Adversity and Support, Other Optional Domains, Quantitative Sensory Testing Recommendations.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.8dcv6l
title: FAIRsharing record for: Cross-Linguistic Data Formats
title: CLDF

description: This FAIRsharing record describes:  Cross-Linguistic Data Formats (CLDF) is a format for exchanging cross-linguistic data. CLDF provides modular specifications for common data types in language typology and historical linguistics, which are based on a shared data model and a formal ontology. The main type of cross-linguistic data relevant to this format is tabular data that is typically analysed using quantitative (automated) methods or made accessible using software tools like the `clld` framework, such as wordlists, structure datasets and simple dictionaries. Each CLDF dataset is described by a JSON metadata file according to Model for Tabular Data and Metadata on the Web (CSVW) tabular metadata specification.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.rsuicm
title: FAIRsharing record for: National Aeronautics and Space Administration Ames Format for Data Exchange
title: NASA Ames Format

description: This FAIRsharing record describes:  The National Aeronautics and Space Administration Ames Format for Data Exchange (NASA Ames Format) is composed of ASCII data files that are written in one of nine "standard" file formats. The ASCII data file formats were developed at Ames Research Center by R. Stephen Hipskind and Steven E. Gaines in 1990 to standardize the file formats used for in-the-field data exchange during aircraft field experiments. Each ASCII data file consists of a file header, followed by the data records. The file header describes the data and the origin of the file. The data are conceptually divided into Independent Variables and Dependent Variables. The Dependent Variables are further divided into Primary and Auxiliary Variables.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.q9nh66
title: FAIRsharing record for: ENA Sequence Flat File Format
title: null

description: This FAIRsharing record describes:  ENA Sequence Flat File Format is a standardised plain text format for nucleotide sequences. This format was previously called the EMBL Sequence Flat File Format.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.w7kfdn
title: FAIRsharing record for: Cardiac Electrophysiology Ontology
title: EP

description: This FAIRsharing record describes:  The Cardiac Electrophysiology Ontology contains terms describing single-channel electrophysiological experiments and data obtained using voltage-clamp, current clamp and fluorescence imaging techniques applied at the cell level and multi-channel fluorescence imaging techniques applied at the cell, tissue and whole heart levels. This tool is part of the Cardiovascular Research Grid project (http://wiki.cvrgrid.org/index.php/Main_Page) which is part funded by the NIH. 
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.ddk9t9
title: FAIRsharing record for: IUPAC International Chemical Identifier
title: InChI

description: This FAIRsharing record describes:  Originally developed by the International Union of Pure and Applied Chemistry (IUPAC), the IUPAC International Chemical Identifier (InChI) is a machine-readable string generated from a chemical structure. InChIs are unique to the compound they describe and can encode absolute stereochemistry making chemicals and chemistry machine-readable and discoverable. A simple analogy is that InChI is the bar-code for chemistry and chemical structures. A hashed fixed-length version of the InChI, the InChIKey, is also widely used.  The InChI format and algorithm are non-proprietary and the software is open source, with ongoing development done by the community. A number of IUPAC working groups are working on extensions and new applications of the standard.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.hxvt6c
title: FAIRsharing record for: MDL Molfile Format
title: null

description: This FAIRsharing record describes:  An MDL Molfile is a file format for holding information about the atoms, bonds, connectivity and coordinates of a molecule. The molfile consists of some header information, the Connection Table (CT) containing atom info, then bond connections and types, followed by sections for more complex information. The molfile is sufficiently common that most, if not all, cheminformatics software systems/applications are able to read the format, though not always to the same degree. It is also supported by some computational software such as Mathematica. The current de facto standard version is molfile V2000, although, more recently, the V3000 format has been circulating widely enough to present a potential compatibility issue for those applications that are not yet V3000-capable. Please note that this format is only available after registration on the Dassault Systems website.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.46e1e9
title: FAIRsharing record for: Proteomics Standards Initiative Extended Fasta Format
title: PEFF

description: This FAIRsharing record describes:  The PSI Extended Fasta Format (PEFF) is a unified format for protein and nucleotide sequence databases to be used by sequence search engines and other associated tools (spectra library search tools, sequence alignment software, data repositories, etc). This format enables consistent extraction, display and processing of information such as protein/nucleotide sequence database entry identifier, description, taxonomy, etc. across software platforms. It also allows the representation of structural annotations such as post-translational modifications, mutations and other processing events. The proposed format has the form of a plain text file that extends the formalism of the individual sequence entries as presented in the FASTA format and that includes a header of meta data to describe relevant information about the database(s) from which the sequences have been obtained.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.7407ba
title: FAIRsharing record for: ISO 20387:2018 Biotechnology — Biobanking — General requirements for biobanking
title: ISO 20387:2018

description: This FAIRsharing record describes:  This document specifies general requirements for the competence, impartiality and consistent operation of biobanks including quality control requirements to ensure biological material and data collections of appropriate quality. ISO 20387:2018 is applicable to all organizations performing biobanking, including biobanking of biological material from multicellular organisms (e.g. human, animal, fungus and plant) and microorganisms for research and development. Biobank users, regulatory authorities, organizations and schemes using peer-assessment, accreditation bodies, and others can also use this document in confirming or recognizing the competence of biobanks. This document does not apply to biological material intended for food/feed production, laboratories undertaking analysis for food/feed production, and/or therapeutic use.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.s6bouk
title: FAIRsharing record for: w3id.org
title: w3id

description: This FAIRsharing record describes:  A secure, permanent URL re-direction service for Web applications run by the W3C Permanent Identifier Community Group. Web applications that deal with Linked Data often need to specify and use URLs that are very stable. They utilize services such as this one to ensure that applications using their URLs will always be re-directed to a working website. This website operates like a switchboard, connecting requests for information with the true location of the information on the Web. The switchboard can be reconfigured to point to a new location if the old location stops working.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.9rhr9j
title: FAIRsharing record for: Eukaryotic Pathogen, Host & Vector Genomics Resource Ontology
title: VEuPathDB Ontology

description: This FAIRsharing record describes:  The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource. The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.2tpx4v
title: FAIRsharing record for: Global Alliance for Genomics and Health Metadata Model
title: GA4GH

description: This FAIRsharing record describes:  The metadata model for GA4GH, an international coalition of both public and private interested parties, formed to enable the sharing of genomic and clinical data.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.ec6bec
title: FAIRsharing record for: Scientific Variables Ontology
title: SVO

description: This FAIRsharing record describes:  The Scientific Variables Ontology (SVO) outlines the required and optional components for creating machine-interpretable scientific variable concepts. SVO comprises an upper ontology (SVU) that contains a set of modular conceptual categories and relationships between them, as well as a lower ontology (SVL) that contains instances within each category. SVL can be manually or automatically populated with concepts from a wide range of fields to create custom variables. Originally, SVO was created to express the set of CSDMS standard names in ontology form. The current ontology is designed to be terminology agnostic and can be augmented to include an unlimited number of synonymous terms. SVO is designed to balance a linguistic model of the world with a scientific model. SVO attempts to provide a template for retrieving information about a variable from free-form text. One of the primary goals of SVO is to work towards automated ontology generation of scientific variables following ideas laid out in an upper ontology of higher level concepts.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.wvpgwn
title: FAIRsharing record for: Evidence and Conclusion Ontology
title: ECO

description: This FAIRsharing record describes:  The Evidence and Conclusion Ontology (ECO) contains terms that describe types of evidence and assertion methods. ECO terms are used in the process of biocuration to capture the evidence that supports biological assertions (e.g. gene product X has function Y as supported by evidence Z). Capture of this information allows tracking of annotation provenance, establishment of quality control measures, and query of eviden
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.x39h5y
title: FAIRsharing record for: Experimental Conditions Ontology
title: XCO

description: This FAIRsharing record describes:  The Experimental Conditions Ontology is designed to represent the conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.zk8p4g
title: FAIRsharing record for: Open Microscopy Environment eXtensible Markup Language
title: OME-XML

description: This FAIRsharing record describes:  OME develops open-source software and data format standards for the storage and manipulation of biological microscopy data. It is a joint project between universities, research establishments, industry and the software development community. The purpose of OME-XML is to provide a rich, extensible way to save information concerning microscopy experiments and the images acquired therein.  OME-XML as a file format is superseded by OME-TIFF, which is the preferred container format for image data making use of the OME Data Model.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.284e1z
title: FAIRsharing record for: Ontology for Biomedical Investigations
title: OBI

description: This FAIRsharing record describes:  The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with precisely defined meanings to describe all aspects of how investigations in the biological and medical domains are conducted. OBI fosters clear communication about scientific investigations by defining more than 2500 terms for assays, devices, objectives, and more.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.