cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20219471
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 92)

description: There are 17 files in this dataset. This is the 92nd part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20219471.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 92)

description: There are 17 files in this dataset. This is the 92nd part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20219537
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 94)

description: There are 17 files in this dataset. This is the 94th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20219537.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 94)

description: There are 17 files in this dataset. This is the 94th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20219447
title: The output files of PhyloBayes

description: All the output files from the PhyloBayes runs (chain3 and chain5) of <em>Phylogenomics elucidate the origin of insects</em>.
DOI: 10.6084/m9.figshare.20219447.v1
title: The output files of PhyloBayes

description: All the output files from the PhyloBayes runs (chain3 and chain5) of <em>Phylogenomics elucidate the origin of insects</em>.
DOI: 10.6084/m9.figshare.20219237
title: Functional analysis in a model sea anemone reveals phylogenetic complexity and a role in cnidocyte discharge of DEG/ENaC ion channels

description: Dataset1: Amino acid sequences of DEG/ENAC ion channels in metazoa. Dataset 2: Alingnments of amino acid sequences of DEG/ENAC ion channels in metazoa.
DOI: 10.6084/m9.figshare.20219237.v1
title: Functional analysis in a model sea anemone reveals phylogenetic complexity and a role in cnidocyte discharge of DEG/ENaC ion channels

description: Dataset1: Amino acid sequences of DEG/ENAC ion channels in metazoa. Dataset 2: Alingnments of amino acid sequences of DEG/ENAC ion channels in metazoa.
DOI: 10.5281/zenodo.6792199
title: Parazoanthus atlanticus decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6792198
title: Parazoanthus atlanticus decontaminated FSCR

description: .
DOI: 10.6084/m9.figshare.20219738.v1
title: Additional file 1 of Practical application of a Bayesian network approach to poultry epigenetics and stress

description: Additional file 1. Arcs and their corresponding probabilities of being part of a high scoring network.List of arcs identified between differentially methylated regions and with the stress condition, with their corresponding probabilities of being part of a high scoring network. The first column (“arc”) is an arbiratry numbering for the arc;the second column (“from”) represents the parent node for each arc (arcs from); the third column (“to”) represents the child node for each arc (arcs to); the third column (“Average.Probablity”) represents the average probability value for each arc of being part of a high scoring network.
DOI: 10.6084/m9.figshare.20219741
title: Additional file 2 of Practical application of a Bayesian network approach to poultry epigenetics and stress

description: Additional file 2. Differentially methylated regions and their annotations. List of differentially methylated regions (DMR) with their corresponding genetic annotation terms. The first column (“SYMBOL”) represents the abbreviated gene name of the methylated region; those which say “annotated” plus a number means that the symbol for that particular DMR was not available; the second column (“Gene ID”) represents the ENSEMBL gene ID; the third column (“Description”) represents the description of the DMR (NA for those not available); the fourth column (“Chromosome””) represents the chromosome in which the DMR is located; the fifth column (“Location”) represent the location in the chromosome of each particular DMR (chromosome number repeated); the seventh column.
DOI: 10.6084/m9.figshare.20219738
title: Additional file 1 of Practical application of a Bayesian network approach to poultry epigenetics and stress

description: Additional file 1. Arcs and their corresponding probabilities of being part of a high scoring network.List of arcs identified between differentially methylated regions and with the stress condition, with their corresponding probabilities of being part of a high scoring network. The first column (“arc”) is an arbiratry numbering for the arc;the second column (“from”) represents the parent node for each arc (arcs from); the third column (“to”) represents the child node for each arc (arcs to); the third column (“Average.Probablity”) represents the average probability value for each arc of being part of a high scoring network.
DOI: 10.6084/m9.figshare.20219741.v1
title: Additional file 2 of Practical application of a Bayesian network approach to poultry epigenetics and stress

description: Additional file 2. Differentially methylated regions and their annotations. List of differentially methylated regions (DMR) with their corresponding genetic annotation terms. The first column (“SYMBOL”) represents the abbreviated gene name of the methylated region; those which say “annotated” plus a number means that the symbol for that particular DMR was not available; the second column (“Gene ID”) represents the ENSEMBL gene ID; the third column (“Description”) represents the description of the DMR (NA for those not available); the fourth column (“Chromosome””) represents the chromosome in which the DMR is located; the fifth column (“Location”) represent the location in the chromosome of each particular DMR (chromosome number repeated); the seventh column.
DOI: 10.6084/m9.figshare.20219744
title: Additional file 3 of Practical application of a Bayesian network approach to poultry epigenetics and stress

description: Additional file 3. R code for data discretisation, Bayesian network generation, and model averaging.R code is provided, that operates with Additional file 4 (the DMR raw data), to discretise into presence/absence discrete states, run 100 Bayesian network greedy searches for input into the model averaging, and perform the model averaging to generate a file containing the highly probable arcs. Comments direct the reader to how to use this code on their own data set.
DOI: 10.6084/m9.figshare.20219744.v1
title: Additional file 3 of Practical application of a Bayesian network approach to poultry epigenetics and stress

description: Additional file 3. R code for data discretisation, Bayesian network generation, and model averaging.R code is provided, that operates with Additional file 4 (the DMR raw data), to discretise into presence/absence discrete states, run 100 Bayesian network greedy searches for input into the model averaging, and perform the model averaging to generate a file containing the highly probable arcs. Comments direct the reader to how to use this code on their own data set.
DOI: 10.6084/m9.figshare.20219747
title: Additional file 4 of Practical application of a Bayesian network approach to poultry epigenetics and stress

description: Additional file 4. Differential methylated regions plus treatment raw data.The raw methylation values for each DMR (number of sequenced reads) plus treatment representing stress condition (0 = control, 1 = stress) are provided in tab-delimited format. The header row contains DMR name or ‘Treatment’; rows are individuals.
DOI: 10.6084/m9.figshare.20219747.v1
title: Additional file 4 of Practical application of a Bayesian network approach to poultry epigenetics and stress

description: Additional file 4. Differential methylated regions plus treatment raw data.The raw methylation values for each DMR (number of sequenced reads) plus treatment representing stress condition (0 = control, 1 = stress) are provided in tab-delimited format. The header row contains DMR name or ‘Treatment’; rows are individuals.
DOI: 10.5281/zenodo.6792179
title: Brain Time-SLIP

description: a) Glymphatic_testSET – Brain MRI T-SLIP test data (DICOMs) for the glymphatic flow quantification. b) DataAnonymized – per subject fit results from the study conducted @ UC San Diego.
DOI: 10.5281/zenodo.6792178
title: Brain Time-SLIP

description: a) Glymphatic_testSET – Brain MRI T-SLIP test data (DICOMs) for the glymphatic flow quantification. b) DataAnonymized – per subject fit results from the study conducted @ UC San Diego.
DOI: 10.6084/m9.figshare.16620238
title: A public dataset on long-distance running training in 2019 and 2020

description: This dataset contains 10,703,690 records of running training during 2019 and 2020, from 36,412 athletes from around the world. The records were obtained through web scraping of a large social network for athletes on the internet.<br>The data with the athletes' activities are contained in dataframe objects (tabular data) and saved in the Parquet file format using the Pandas library, part of the Python ecosystem for data science. Each Pandas dataframe contains the following data (as different columns) for each athlete (as different rows), the first word identifies the name of the column in the dataframe:- datetime: date of the running activity;- athlete: a computer-generated ID for the athlete (integer);- distance: distance of running (floating-point number, in kilometers);- duration: duration of running (floating-point number, in minutes);- gender: gender (string 'M' of 'F');- age_group: age interval (one of the strings '18 - 34', '35 - 54', or '55 +');- country: country of origin of the athlete (string);- major: marathon(s) and year(s) the athlete ran (comma-separated list of strings).<br>For convenience, we created files with the athletes' activities data sampled at different frequencies: day 'd', week 'w', month 'm', and quarter 'q' (i.e., there are files with the distance and duration of running accumulated at each day, week, month, and quarter) for each year, 2019 and 2020. Accordingly, the files are named 'run_ww_yyyy_f.parquet', where 'yyyy' is '2019' or '2020' and 'f' is 'd', 'w', 'm' or 'q' (without quotes). The dataset also contains data with different government’s stringency indexes for the COVID-19 pandemic. These data are saved as text files and were obtained from https://ourworldindata.org/covid-stringency-index. The Jupyter notebooks that we created and made available in the https://github.com/BMClab/covid19 repository exemplify the use of the data.
DOI: 10.6084/m9.figshare.20219784
title: Top predators as biodiversity indicators: a meta-analysis

description: Data and R codes that support the outcomes of the paper, titled "Top predators as biodiversity indicators: a meta-analysis" published in <em>Ecology Letters</em>.
DOI: 10.6084/m9.figshare.20219784.v2
title: Top predators as biodiversity indicators: a meta-analysis

description: Data and R codes that support the outcomes of the paper, titled "Top predators as biodiversity indicators: a meta-analysis" published in <em>Ecology Letters</em>.
DOI: 10.6084/m9.figshare.20219784.v1
title: Top predators as biodiversity indicators: a meta-analysis

description: Data and R codes that support the outcomes of the paper, titled "Top predators as biodiversity indicators: a meta-analysis" published in <em>Ecology Letters</em>.
DOI: 10.6084/m9.figshare.20219799
title: Data_SL on schools acting as L.O.docx

description: Pearson correlation, Simple and multiple regression analysis data.
DOI: 10.6084/m9.figshare.20219799.v1
title: Data_SL on schools acting as L.O.docx

description: Pearson correlation, Simple and multiple regression analysis data.
DOI: 10.6084/m9.figshare.20219802
title: Top predators as biodiversity indicators: a meta-analysis

description: Data and R codes that support the outcomes of the paper, titled "Top predators as biodiversity indicators: a meta-analysis" published in Ecology Letters.
DOI: 10.5281/zenodo.6619877
title: Edge effects on decomposition in Sphagnum bogs

description: Dataset from Peatland decomposition study of edge effects (laggs). Data collected in 2021. Tea Bag Index decomposition and plant composition in Swedish peatlands.
DOI: 10.34740/kaggle/dsv/3897107
title: Mahanagar Yatayat Dataset
DOI: 10.6084/m9.figshare.20219456
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 87)

description: There are 17 files in this dataset. This is the 87th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20219456.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 87)

description: There are 17 files in this dataset. This is the 87th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20219459
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 88)

description: There are 17 files in this dataset. This is the 88th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20219459.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 88)

description: There are 17 files in this dataset. This is the 88th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20219453
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 86)

description: There are 17 files in this dataset. This is the 86th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.