cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.a437nk
title: Occurrence Download

description: A dataset containing 1366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Debregeasia orientalis C.J.Chen, Debregeasia orientalis, Debregeasia orientalis C.J.Chen, Debregeasia orientalis C.J.Chen, Debregeasia orientalis C.J.Chen, 186824085, Debregeasia orientalis C.J.Chen, Debregeasia orientalis C.J.Chen, Debregeasia orientalis C.J.Chen, 1991, Debregeasia orientalis, Debregeasia orientalis C.J.Chen, Debregeasia orientalis C.J.Chen, Debregeasia orientalis C. J. Chen, Patania sabinusalis (Walker 1859), Patania sabinusalis (Walker, 1859), Yuhina brunneiceps Ogilvie-Grant, 1906, Paraboea wenshanensis Xin Hong & F.Wen, Menippus asahinai (Chûjô) Chujo, Paraboea wenshanensis X. Hong & F. Wen 2018, Menippus asahinai (Chujo, 1962), Morphosphaera coomani Laboissiere, Morphosphaera coomani Laboissiere, Boehmeria janagi-itsigo Siebold, Debregeasia edulis)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1366 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245495-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zv7cfv
title: Occurrence Download

description: A dataset containing 221802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0, Pending, Incompatible)",
 "TaxonKey is Chelonia mydas (Linnaeus, 1758)"
 ]
}

 The dataset includes 221802 records from 471 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066772-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ny3k45
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aspidistra sichuanensis K.Y.Lang & Z.Y.Zhu",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 31 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262990-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vezrvp
title: Occurrence Download

description: A dataset containing 212105 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is University of Michigan Museum of Zoology, Division of Birds"
 ]
}

 The dataset includes 212105 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253207-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8hgqe
title: Occurrence Download

description: A dataset containing 1642 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Modern distribution of the European ground squirrel (Spermophilus citellus) in Ukraine"
 ]
}

 The dataset includes 1642 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245494-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mwejk
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astragalus arnoldianus N.D.Simpson",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263002-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.my48zy
title: Occurrence Download

description: A dataset containing 2910 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is A checklist to the wasps of Peru (Hymenoptera, Aculeata)"
 ]
}

 The dataset includes 2910 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248309-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f2q3my
title: Occurrence Download

description: A dataset containing 279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alca torda Linnaeus, 1758",
 "HasCoordinate is true",
 "Country is Norway",
 "DatasetKey is Norwegian Species Observation Service",
 "Year is 1999",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 279 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253244-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zs4mca
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aster oreophilus Franch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 135 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262998-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.asgbhg
title: Occurrence Download

description: A dataset containing 7865 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Cassia multijuga Rich., Cassia multijuga var. lindleyana (Gardner) Benth., Cassia multijuga var. multijuga, Senna multijuga (Rich.) H.S.Irwin & Barneby, Senna multijuga subsp. multijuga, Senna multijuga subsp. doylei (Britton & Rose) H.S.Irwin & Barneby, Senna multijuga subsp. lindleyana (Gardner) H.S.Irwin & Barneby, Senna multijuga var. peregrinatrix H.S.Irwin & Barneby, Senna multijuga var. multijuga, Senna multijuga var. verrucosa (Vogel) H.S.Irwin & Barneby, Senna multijuga var. lindleyana (Gardner) H.S.Irwin & Barneby)"
 ]
}

 The dataset includes 7865 records from 270 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254726-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2j5hrf
title: Occurrence Download

description: A dataset containing 315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alca torda Linnaeus, 1758",
 "HasCoordinate is true",
 "Country is Norway",
 "DatasetKey is Norwegian Species Observation Service",
 "Year is 2002",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 315 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253255-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5dwf7
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astragalus balfourianus G.Simpson",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 40 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263005-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vx76h6
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dasyatis guttata (Bloch & Schneider, 1801)"
 ]
}

 The dataset includes 19 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248311-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qjcz2
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aster smithianus Hand.-Mazz.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 42 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262999-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ap4d8
title: Occurrence Download

description: A dataset containing 8291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Linepithema humile (Mayr, 1868)"
 ]
}

 The dataset includes 8291 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066776-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgbefv
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aster tongolensis Franch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 194 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263001-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8vn5w7
title: Occurrence Download

description: A dataset containing 1050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Vascular plant specimens of National Museum of Nature and Science (TNS)",
 "TaxonKey is Arachniodes borealis Seriz."
 ]
}

 The dataset includes 1050 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245499-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njvpbc
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alcedo atthis (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Country is Norway",
 "DatasetKey is Norwegian Species Observation Service",
 "Year is 2002",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 31 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253256-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6593g7
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astragalus brevialatus H.T.Tsai & T.T.Yu",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263007-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sqv6xx
title: Occurrence Download

description: A dataset containing 482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alca torda Linnaeus, 1758",
 "HasCoordinate is true",
 "Country is Norway",
 "DatasetKey is Norwegian Species Observation Service",
 "Year is 2003",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 482 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253258-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkxpa8
title: Occurrence Download

description: A dataset containing 674 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Actitis hypoleucos (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Country is Norway",
 "DatasetKey is Norwegian Species Observation Service",
 "Year is 1993",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 674 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253094-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j9c8tb
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astragalus degensis Ulbr.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 21 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263013-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3k4cga
title: Occurrence Download

description: A dataset containing 1374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alauda arvensis Linnaeus, 1758",
 "HasCoordinate is true",
 "Country is Norway",
 "DatasetKey is Norwegian Species Observation Service",
 "Year is 2005",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1374 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0253257-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75kr69
title: Occurrence Download

description: A dataset containing 359232 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anas poecilorhyncha J.R.Forster, 1781"
 ]
}

 The dataset includes 359232 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248319-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4mj5ks
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astragalus caeruleopetalinus Y.C.Ho",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263008-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fz3uwf
title: Occurrence Download

description: A dataset containing 263230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Robinia pseudoacacia L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 263230 records from 1736 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245496-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11091802
title: SeMRA Anatomy Mappings Database

description: Supports the analysis of the landscape of anatomy nomenclature resources. See instructions for reproduction and usage in the attached README.md.
DOI: 10.5281/zenodo.15826754
title: SeMRA Anatomy Mappings Database

description: Supports the analysis of the landscape of anatomy nomenclature resources. See instructions for reproduction and usage in the attached README.md.
DOI: 10.5281/zenodo.11091885
title: SeMRA Disease Mappings Database

description: Supports the analysis of the landscape of disease nomenclature resources. See instructions for reproduction and usage in the attached README.md.
DOI: 10.5281/zenodo.15826693
title: SeMRA Disease Mappings Database

description: Supports the analysis of the landscape of disease nomenclature resources. See instructions for reproduction and usage in the attached README.md.
DOI: 10.34740/kaggle/dsv/13609438
title: Trending Youtube Video Statistics (113 Countries)
DOI: 10.5281/zenodo.15826794
title: SeMRA Gene Mappings Database

description: Analyze the landscape of gene nomenclature resources, species-agnostic. See instructions for reproduction and usage in the attached README.md.
DOI: 10.5281/zenodo.11092012
title: SeMRA Gene Mappings Database

description: Analyze the landscape of gene nomenclature resources, species-agnostic. See instructions for reproduction and usage in the attached README.md.
DOI: 10.5255/ukda-sn-857930
title: COVID-19’s Lasting Effects in People With and Without Persistent Pain: A UK-Based Survey of Symptoms, Psychological Flexibility, and Mental Health, 2021

description: Persisting symptoms following COVID-19 may adversely impacts general mental health of people with chronic pain, and psychological flexibility may buffer these impacts. However, it remains unclear whether such lasting implications of COVID-19 would differ between people with and without chronic pain. 

This study investigates the relationships between persistent symptoms post COVID-19, psychological flexibility general mental health among people with and without persistent pain, during the COVID-19 pandemic in the UK. 

204 adults living in the UK were recruited via social media, and completed an online survey including measures of persistent symptoms, depression (Patient Health Questionnaire-9), anxiety (General Anxiety Disorder-7) and insomnia (Insomnia Severity Index), and psychological flexibility (Multidimensional Psychological Flexibility Inventory), and were included in the analyses.

Participants with persistent pain (n = 70) experienced more persistent symptoms, poorer general mental health, and higher level of psychological inflexibility, compared with participants without persistent pain (n = 133). Overall, the relationships between persistent physical symptoms, general mental health, and psychological (in)flexibility showed similar patterns in the two groups. Participants with more persistent physical symptoms experienced significantly poorer general mental health. Furthermore, people with higher levels of psychological inflexibility reported worse general mental health. There was little evidence that psychological (in)flexibility could “buffer” the association between persistent physical symptoms and general mental health. Conclusions: People with chronic pain appear more vulnerable to persistent symptoms and reduced general mental health, compared with people without pain. Treatments that reduce psychological inflexibility, such as ACT, may improve outcomes for people with persistent symptoms post COVID-19.
DOI: 10.5281/zenodo.11082038
title: SeMRA Raw Semantic Mappings Database

description: An automatically assembled dataset of raw semantic mappings produced by python -m semra.database. This incorporates mappings from the following places:



Ontologies indexed in the Bioregistry (primary)

Databases integrated in PyOBO (primary)

Biomappings (secondary)

Wikidata (primary/secondary)

Custom resources integrated in SeMRA (primary)


This is a database of raw mapping without further processing. For processed mapping datasets, we suggest smaller domain-specific processing rules (see https://github.com/biopragmatics/semra/tree/main/notebooks/landscape for examples). It can be accessed directly via:



mappings.sssom.tsv.gz - loadable through any tools supporting SSSOM

mappings.jsonl.gz - loadable through SeMRA using semra.from_jsonl


How to Run the Web App



Download all artifacts from this Record

Make sure that you have Docker running locally

Run sh run_on_docker.sh from the command line

Navigate to http://localhost:8773 to see the SeMRA dashboard or to http://localhost:7474 for direct access to the Neo4j graph database


Licensing

Mappings are licensed according to their primary resources. These are explicitly annotated in the SSSOM file on each row (when available) and on the mapping set level in the Neo4j graph database artifacts.
DOI: 10.5281/zenodo.15504009
title: SeMRA Raw Semantic Mappings Database

description: An automatically assembled dataset of raw semantic mappings produced by python -m semra.database. This incorporates mappings from the following places:



Ontologies indexed in the Bioregistry (primary)

Databases integrated in PyOBO (primary)

Biomappings (secondary)

Wikidata (primary/secondary)

Custom resources integrated in SeMRA (primary)


This is a database of raw mapping without further processing. For processed mapping datasets, we suggest smaller domain-specific processing rules (see https://github.com/biopragmatics/semra/tree/main/notebooks/landscape for examples). It can be accessed directly via:



mappings.sssom.tsv.gz - loadable through any tools supporting SSSOM

mappings.jsonl.gz - loadable through SeMRA using semra.from_jsonl


How to Run the Web App



Download all artifacts from this Record

Make sure that you have Docker running locally

Run sh run_on_docker.sh from the command line

Navigate to http://localhost:8773 to see the SeMRA dashboard or to http://localhost:7474 for direct access to the Neo4j graph database


Licensing

Mappings are licensed according to their primary resources. These are explicitly annotated in the SSSOM file on each row (when available) and on the mapping set level in the Neo4j graph database artifacts.
DOI: 10.15468/dl.smtkn6
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((8.83433 42.60039,8.83921 42.59342,8.84636 42.60195,8.83978 42.60462,8.83433 42.60039))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 31 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014855-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17182/hepdata.5406.v1/t1
title: "Table 1" of "Scattering of antineutrons by protons"

description: '1'. '2'. '3'.
description: No description provided.
DOI: 10.17182/hepdata.5406.v1/t2
title: "Table 2" of "Scattering of antineutrons by protons"

description: No description provided.
description: No description provided.
DOI: 10.17182/hepdata.5443.v1/t1
title: "Table 1" of "Determination of the cross-sections for the production of fragments from relativistic nucleus-nucleus interactions. 1: Measurements"

description: TARGET NUCLEUS=CH2.
description: AC=LBL-BEVALAC.
DOI: 10.17182/hepdata.5443.v1/t3
title: "Table 3" of "Determination of the cross-sections for the production of fragments from relativistic nucleus-nucleus interactions. 1: Measurements"

description: No description provided.
description: AC=LBL-BEVALAC.
DOI: 10.17182/hepdata.5443.v1/t4
title: "Table 4" of "Determination of the cross-sections for the production of fragments from relativistic nucleus-nucleus interactions. 1: Measurements"

description: No description provided.
description: AC=LBL-BEVALAC.
DOI: 10.17182/hepdata.5443.v1/t5
title: "Table 5" of "Determination of the cross-sections for the production of fragments from relativistic nucleus-nucleus interactions. 1: Measurements"

description: No description provided.
description: AC=LBL-BEVALAC.