cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17355410
title: Golgi-IP, a tool for multimodal analysis of Golgi molecular content

description: This Zenodo deposit contains a publicly available description of the Dataset:

Title: "Golgi-IP, a tool for multimodal analysis of Golgi molecular content".

Description: Quantitative DIA-based proteomic analysis of Golgi-IP in HEK293 cells. The data set contains six replicates of GolgiTAG-IP, Control-IP, GolgiTAG whole cell extract and Control cells whole cell extract. The mass spectrometry data is acquired using variable data independent acquisition (vDIA) on an Orbitrap Exploris 480 mass spectrometer. Database searches performed against Human Uniprot database using Spectronaut search algorithm.





This dataset is made available to researchers via the ASAP CRN Cloud: cloud.parkinsonsroadmap.org. Instructions for how to request access can be found in the User Manual.

This research was funded by the Aligning Science Across Parkinson's Collaborative Research Network (ASAP CRN), through the Michael J. Fox Foundation for Parkinson's Research (MJFF).

This Zenodo deposit was created by the ASAP CRN Cloud staff on behalf of the dataset authors. It provides a citable reference for a CRN Cloud Dataset
DOI: 10.5281/zenodo.16751625
title: PD5D_MTG_snRNAseq

description: This Zenodo deposit contains a publicly available description of the Dataset:

Title: "PD5D_MTG_snRNAseq".

Description: This dataset contains single-nucleus RNA sequencing (snRNAseq) raw data in FASTQ format for 94 human middle temporal gyrus (MTG) samples from Parkinson's patients and healthy controls. It's part of the PD5D atlas, where the same subjects were also profiled with other omics assays incl. genotyping, single-cell ATACseq, and spatial transcriptomics.



This dataset is made available to researchers via the ASAP CRN Cloud: cloud.parkinsonsroadmap.org. Instructions for how to request access can be found in the User Manual.

This research was funded by the Aligning Science Across Parkinson's Collaborative Research Network (ASAP CRN), through the Michael J. Fox Foundation for Parkinson's Research (MJFF).

This Zenodo deposit was created by the ASAP CRN Cloud staff on behalf of the dataset authors. It provides a citable reference for a CRN Cloud Dataset

Dataset Metadata was updated for the v1.1 update
DOI: 10.5281/zenodo.17241156
title: PD5D_MTG_snRNAseq

description: This Zenodo deposit contains a publicly available description of the Dataset:

Title: "PD5D_MTG_snRNAseq".

Description: This dataset contains single-nucleus RNA sequencing (snRNAseq) raw data in FASTQ format for 94 human middle temporal gyrus (MTG) samples from Parkinson's patients and healthy controls. It's part of the PD5D atlas, where the same subjects were also profiled with other omics assays incl. genotyping, single-cell ATACseq, and spatial transcriptomics.



This dataset is made available to researchers via the ASAP CRN Cloud: cloud.parkinsonsroadmap.org. Instructions for how to request access can be found in the User Manual.

This research was funded by the Aligning Science Across Parkinson's Collaborative Research Network (ASAP CRN), through the Michael J. Fox Foundation for Parkinson's Research (MJFF).

This Zenodo deposit was created by the ASAP CRN Cloud staff on behalf of the dataset authors. It provides a citable reference for a CRN Cloud Dataset

Dataset Metadata was updated for the v1.1 update
DOI: 10.15468/dl.w5z6yb
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyloscirtus antioquia"
 ]
}

 The dataset includes 52 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010220-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/c396r-v7t98
title: Instructional device assists and trains laboratory-naïve users in sample pooling for high-performance, low-cost molecular testing

description: Analysis codes, raw data, and source data to generate figures, extended data, and supplementary data for the manuscript titled: "Instructional device assists and trains laboratory-naïve users in sample pooling for high-performance, low-cost molecular testing."
DOI: 10.5281/zenodo.17212215
title: Single-nucleus transcriptomic analysis of the dorsal striatum from 6-month-old G2019S LRRK2 mutant mice

description: This Zenodo deposit contains a publicly available description of the Dataset:

Title: "Single-nucleus transcriptomic analysis of the dorsal striatum from 6-month-old G2019S LRRK2 mutant mice".

Description: We performed single-nucleus transcriptomic analysis of the dorsal striatum from 5 wild-type and 5 G2019S LRRK2 mutant mice. This dataset contains the raw fastqs files (grouped together by indexes) from mouse dorsal striatum, sorted by 10 samples (S1 to S10), with files separated by read 1 (R1), read 2 (R2), index reads (I1 and I2), and which lane they were in on the S4 flow cell (L1 to L4). These files are created by bcl2fastq of Cell Ranger; the sequences in those files were used for the alignments.





This dataset is made available to researchers via the ASAP CRN Cloud: cloud.parkinsonsroadmap.org. Instructions for how to request access can be found in the User Manual.

This research was funded by the Aligning Science Across Parkinson's Collaborative Research Network (ASAP CRN), through the Michael J. Fox Foundation for Parkinson's Research (MJFF).

This Zenodo deposit was created by the ASAP CRN Cloud staff on behalf of the dataset authors. It provides a citable reference for a CRN Cloud Dataset
DOI: 10.5281/zenodo.17212222
title: Single-nucleus transcriptomic analysis of the dorsal striatum from 6-month-old G2019S LRRK2 mutant mice

description: This Zenodo deposit contains a publicly available description of the Dataset:

Title: "Single-nucleus transcriptomic analysis of the dorsal striatum from 6-month-old G2019S LRRK2 mutant mice".

Description: We performed single-nucleus transcriptomic analysis of the dorsal striatum from 5 wild-type and 5 G2019S LRRK2 mutant mice. This dataset contains the raw fastqs files (grouped together by indexes) from mouse dorsal striatum, sorted by 10 samples (S1 to S10), with files separated by read 1 (R1), read 2 (R2), index reads (I1 and I2), and which lane they were in on the S4 flow cell (L1 to L4). These files are created by bcl2fastq of Cell Ranger; the sequences in those files were used for the alignments.





This dataset is made available to researchers via the ASAP CRN Cloud: cloud.parkinsonsroadmap.org. Instructions for how to request access can be found in the User Manual.

This research was funded by the Aligning Science Across Parkinson's Collaborative Research Network (ASAP CRN), through the Michael J. Fox Foundation for Parkinson's Research (MJFF).

This Zenodo deposit was created by the ASAP CRN Cloud staff on behalf of the dataset authors. It provides a citable reference for a CRN Cloud Dataset
DOI: 10.15468/dl.br23t3
title: Occurrence Download

description: A dataset containing 33 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 (CAST(occurrence.taxonkey AS INTEGER) = 3587257 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 3587257 OR CAST(occurrence.kingdomkey AS INTEGER) = 3587257 OR CAST(occurrence.phylumkey AS INTEGER) = 3587257 OR CAST(occurrence.classkey AS INTEGER) = 3587257 OR CAST(occurrence.orderkey AS INTEGER) = 3587257 OR CAST(occurrence.familykey AS INTEGER) = 3587257 OR CAST(occurrence.genuskey AS INTEGER) = 3587257 OR CAST(occurrence.specieskey AS INTEGER) = 3587257)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 33 records were derived from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010213-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/nn1m-yq16
title: Application Section Observations

description: Observations fit by double PSF fitting technique and displayed in Application section of paper to test sensitivity of algorithm. Binaries chosen using the Ultracool Sheet with the condition that the filter of observation had sensitivity characterized for in the paper.
DOI: 10.15468/dl.cwzw7b
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "Geometry POLYGON((-106.82433 -33.14214,-36.17567 -33.14214,-36.17567 -4.85786,-106.82433 -4.85786,-106.82433 -33.14214))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hippocamelus antisensis"
 ]
}

 The dataset includes 33 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010221-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13571364
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.22002/wnh8n-mh110
title: A train-and-assist device that upskills novices to strengthen the workforce and expand diagnostic access

description: Analysis codes, raw data, and source data to generate figures, extended data, and supplementary data for the manuscript titled: "A train-and-assist device that upskills novices to strengthen the workforce and expand diagnostic access."
DOI: 10.25345/c5z31p24q
title: MassIVE MSV000099713 - Automated Prototyping of Genetic Codes
title: Proteomics datasets for manuscript Radford et al Automated Prototyping of Genetic codes. Analysis of peptide expression to determine extent of crosstalk between orthogonal genetic codes.
DOI: 10.25574/43380
title: Chandra X-ray Observatory ObsId 43380
DOI: 10.48324/dandi.000986/0.251031.1939
title: Auditory cortex Neuropixels recordings and pupil diameter traces from mice during passive exposure to pure tones

description: In these experiments, neural activity was recorded from auditory cortex of behaving mice during passive tone presentation and arousal state was simultaneously monitored using pupillometry. This dataset contains: (1) spike times of sorted units obtained from Neuropixels 1.0 recordings of auditory cortex of head-fixed mice; in each session, neural recordings were made during periods of silence (spontaneous activity) and during passive presentation of brief pure tones (2-32 kHz, evoked activity); (2) pre-processed and max-normalized pupil diameter traces for each recording session; (3) pre-processed running speed traces for each recording session. The dataset includes 15 sessions from 5 different mice. For more information on the data acquisition and processing, please see the preprint associated with this dataset: https://doi.org/10.1101/2024.04.04.588209.
DOI: 10.15468/dl.eexppt
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "HasCoordinate is false",
 "OccurrenceStatus is Present",
 "StateProvince is Arizona",
 "TaxonKey is Soricomorpha"
 ]
}

 The dataset includes 229 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010222-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xunusk
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-74.02671 4.77285,-74.02666 4.76998,-74.02741 4.76769,-74.02736 4.76516,-74.02721 4.76362,-74.02542 4.76367,-74.02493 4.76193,-74.02413 4.76025,-74.02483 4.76,-74.02413 4.75772,-74.02319 4.75578,-74.0222 4.75638,-74.02205 4.75836,-74.021 4.76015,-74.0213 4.76134,-74.02061 4.76179,-74.01957 4.76114,-74.01693 4.75851,-74.01808 4.76615,-74.01808 4.77092,-74.01897 4.77236,-74.0221 4.77325,-74.02433 4.77325,-74.02671 4.77285))"
 ]
}

 The dataset includes 190 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010223-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nw6t9b
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Drosophila mediopunctata"
 ]
}

 The dataset includes 74 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010224-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2xzfu
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "Geometry POLYGON((-106.82433 -33.14214,-36.17567 -33.14214,-36.17567 -4.85786,-106.82433 -4.85786,-106.82433 -33.14214))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hippocamelus antisensis"
 ]
}

 The dataset includes 33 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010225-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48432/b3pvyn
title: Experimento referente a épocas de semeadura de cultivares de trigo no município de Coxilha, RS.

description: Dados experimentais, fenologia, fenometria, Coxilha, RS, 2019, Épocas de semeadura (25/06/2019, 25/07/2019 e 23/08/2019), Cultivares (Toruk, BRS Reponte, BRS Belajoia e BRS Tarumã), dados de solo (físicos e químicos), de clima e práticas de manejo.
DOI: 10.5281/zenodo.17495274
title: An optogenetics-compatible red fluorescent calcium indicator with negligible blue light photoactivation

description: An optogenetics-compatible red fluorescent calcium indicator with negligible blue light photoactivation

Github link to related analysis code and description of the dataset: https://github.com/markolab/manuscripts-optogenetics-compatible-red-geci
DOI: 10.5281/zenodo.17495275
title: An optogenetics-compatible red fluorescent calcium indicator with negligible blue light photoactivation

description: An optogenetics-compatible red fluorescent calcium indicator with negligible blue light photoactivation

Github link to related analysis code and description of the dataset: https://github.com/markolab/manuscripts-optogenetics-compatible-red-geci
DOI: 10.5281/zenodo.17496747
title: Felis Catus Optimization (FCO V2) MATLAB Codes and Benchmark Datasets
DOI: 10.5281/zenodo.17496748
title: Felis Catus Optimization (FCO V2) MATLAB Codes and Benchmark Datasets
DOI: 10.15468/dl.cp4wg5
title: Occurrence Download

description: A dataset containing 857 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Laticauda laticaudata"
 ]
}

 The dataset includes 857 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010226-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13571436
title: Balochi Language to English Translation Dataset
DOI: 10.6084/m9.figshare.30499553
title: Dataset on Undergraduate Stress, Anxiety, Depression, and Sleep Quality Among First-Year Psychology Students

description: This dataset contains responses from 102 first-year psychology undergraduates who completed standardized self-report questionnaires assessing undergraduate-related stress, anxiety, depressive symptoms, and sleep quality. Data were collected as part of a cross-sectional study on psychological health during the transition to university life.<b>Measures:</b><b>Undergraduate Stress:</b> Measured with the <i>Undergraduate Stress Questionnaire (USQ)</i>, which assesses stressors specific to student life (Crandall et al., 1992).<b>Anxiety:</b> Assessed using the <i>State Anxiety</i> subscale of the <i>State–Trait Anxiety Inventory (STAI)</i> (Spielberger, 1983).<b>Depression:</b> Measured with the <i>Beck Depression Inventory (BDI)</i> (Beck et al., 1996).<b>Sleep Quality:</b> Evaluated using the <i>Pittsburgh Sleep Quality Index (PSQI)</i> (Buysse et al., 1989).<b>Demographics:</b> Age, gender, nicotine consumption (number of cigarettes per day), and caffeine consumption (cups of coffee per day).The dataset is fully anonymized and includes total scores for each instrument. All procedures were approved by the University of Westminster Ethics Committee.
DOI: 10.6084/m9.figshare.30499553.v1
title: Dataset on Undergraduate Stress, Anxiety, Depression, and Sleep Quality Among First-Year Psychology Students

description: This dataset contains responses from 102 first-year psychology undergraduates who completed standardized self-report questionnaires assessing undergraduate-related stress, anxiety, depressive symptoms, and sleep quality. Data were collected as part of a cross-sectional study on psychological health during the transition to university life.<b>Measures:</b><b>Undergraduate Stress:</b> Measured with the <i>Undergraduate Stress Questionnaire (USQ)</i>, which assesses stressors specific to student life (Crandall et al., 1992).<b>Anxiety:</b> Assessed using the <i>State Anxiety</i> subscale of the <i>State–Trait Anxiety Inventory (STAI)</i> (Spielberger, 1983).<b>Depression:</b> Measured with the <i>Beck Depression Inventory (BDI)</i> (Beck et al., 1996).<b>Sleep Quality:</b> Evaluated using the <i>Pittsburgh Sleep Quality Index (PSQI)</i> (Buysse et al., 1989).<b>Demographics:</b> Age, gender, nicotine consumption (number of cigarettes per day), and caffeine consumption (cups of coffee per day).The dataset is fully anonymized and includes total scores for each instrument. All procedures were approved by the University of Westminster Ethics Committee.
DOI: 10.5281/zenodo.17497061
title: AI in Agriculture & Food Science_ Transforming Sustainability and Productivity.
DOI: 10.5281/zenodo.17497062
title: AI in Agriculture & Food Science_ Transforming Sustainability and Productivity.
DOI: 10.60707/8w9n-5611
title: OREX-803208-102 4DSTEM Patterns
DOI: 10.60707/df21-b833
title: OREX-803208-102 4DSTEM Patterns
DOI: 10.60707/rt95-sv73
title: OREX-803208-102 4DSTEM Patterns
DOI: 10.60707/9z2n-sw24
title: OREX-803208-102 4DSTEM Patterns
DOI: 10.15468/dl.9bmxyc
title: Occurrence Download

description: A dataset containing 2273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Atta cephalotes"
 ]
}

 The dataset includes 2273 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010229-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17497022
title: Effects of Violence on Executive Function: A Neuropsychological and Predictive Analysis in Victims of the Armed Conflict in Colombia

description: This research explores how exposure to Colombia’s armed conflict affects adult cognitive and emotional functioning. It compares 300 participants—150 victims and 150 non-victims—using neuropsychological tests such as the MMSE, Wisconsin Card Sorting Test, Tower of Hanoi, and Frontal Assessment Battery. Results show that victims demonstrate poorer planning, flexibility, and inhibitory control (β = –0.178; p = 0.024), with low educational attainment being the strongest predictor of executive deficits (β = –0.249; p < 0.001). Latent mean analyses revealed higher internal anxiety among victims despite lower raw scores, and machine-learning models confirmed that violence and structural inequality account for most of the variance in executive functioning. Overall, the study identifies a measurable cognitive imprint of violence, emphasizing the need for neuropsychological rehabilitation and social policies that restore decision-making capacity after trauma
DOI: 10.15468/dl.bqv4nd
title: Occurrence Download

description: A dataset containing 2899 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Drosophila neotestacea"
 ]
}

 The dataset includes 2899 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010230-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2yjeex
title: Occurrence Download

description: A dataset containing 2748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "TaxonKey is Meles meles"
 ]
}

 The dataset includes 2748 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010231-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17497073
title: Input Data for Ice Sheet Component of OESM

description: Input data required by the ice sheet model component of the Open Earth System Model (OESM).
DOI: 10.5281/zenodo.17497074
title: Input Data for Ice Sheet Component of OESM

description: Input data required by the ice sheet model component of the Open Earth System Model (OESM).
DOI: 10.5281/zenodo.17497107
title: Algorithmic Morality- Governing Ethical Decision-Making in Artificial Intelligence Systems.
DOI: 10.5281/zenodo.17497108
title: Algorithmic Morality- Governing Ethical Decision-Making in Artificial Intelligence Systems.
DOI: 10.6084/m9.figshare.11887860
title: Data_Huntingtin_Profilin.zip

description: All experimental CPMG and exchange-induced shift data, as well as Matlab scripts used to globally fit the experimental data, presented in the following paper published in Proc. Natl. Acad. Sci. U.S.A.Ceccon, A., Tugarinov, V., Ghirlando, R and Clore, G.M. (2020) Abbrigation of prenucleation, transient oligomerization of the Huntingtin exon 1 protein by human profilin I. Proc. Natl. Acad. Sci. U.S.A. epub ahead of print doi: http://www.pnas.org/cgi/doi/10.1073/pnas.1922264117