cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.c06p34h/4
title: Jury and Toonen. Proc B. pH.min

description: pH values obtained from morning pH measurements over the course of the experiment. Samples were collected at ~0845 hr, 15 min before the aquarium lights came on. Columns correspond to each aquarium in the experiment with tank number and target temperature and pH conditions as indicated.
DOI: 10.5061/dryad.c06p34h/5
title: Jury and Toonen. Proc B. pH.max

description: pH values obtained from evening pH measurements over the course of the experiment. Samples were collected at ~2045 hr, 15 min before the aquarium lights went off. Columns correspond to each aquarium in the experiment with tank number and target temperature and pH conditions as indicated.
DOI: 10.5061/dryad.c06p34h/6
title: Jury and Toonen. Proc B. pH.diel

description: pH values obtained from samples collected every 3 hr over the diel sampling period. Columns correspond to each aquarium in the experiment with tank number and target temperature and pH conditions as indicated.
DOI: 10.5061/dryad.c06p34h/7
title: Jury and Toonen. Proc B. TA.diel

description: Total alkalinity (ueq/kg) values obtained from samples taken every 6 hr during the diel sampling period. Columns correspond to each aquarium in the experiment with tank number and target temperature and pH conditions as indicated.
DOI: 10.5061/dryad.c360s80/1
title: Total bomass and root mass fraction of each species
DOI: 10.5061/dryad.c360s80/2
title: Total plant N content and N-uptake rate of each species
DOI: 10.5061/dryad.c360s80/3
title: GloNAF regions of study species
DOI: 10.5061/dryad.cc6q923/1
title: Biotic resistance invasive grass fire cycles
DOI: 10.5061/dryad.cq408t7/1
title: Data for Levis&Pfennig Proceedings B submission

description: Data accompanying main text analyses
DOI: 10.5061/dryad.cq408t7/2
title: Appendix 1 aggregation size data

description: Appendix 1 aggregation size data
DOI: 10.5061/dryad.d20221b/1
title: conduc_emerg_analysis

description: Emergence rates of Chironomus tepperi across different conductivity treatments
DOI: 10.5061/dryad.dr357sv/1
title: Appendix S1,S2,S3,S4,S5,S6,S7

description: Appendix S1 Variation in root biomass and its proportion of the plant community as measured using the drilling method in stratified soil layer in different months of the growing season. 
Appendix S2 Data and statistical analysis on live root biomass, total root biomass and proportion of live root to total root mass.
Appendix S3 Data and statistical analysis on BNPP and root turnover rate 
Appendix S4 Data and statistical analysis on relationships between root turnover rate and the ratio of live root mass to total root mass.
Appendix S5 Data and statistical analysis on aboveground biomass in June, July, August and September.
Appendix S6 Data and statistical analysis on standing live biomass of functional groups of the plant community
Appendix S7 Primary data of this paper.
DOI: 10.5061/dryad.hp250fb/3
title: Supplementary 2 Bat Character List

description: List of osteological characters used to determine the relative skeletal weightings for the CCM2.
DOI: 10.5061/dryad.hr5d4g8/1
title: Northern European cattle_genomic profiles.zip

description: The data include PLINK files in binary format (bed, bim, fam) for 195 individual cattle and 677,311 autosomal single nucleotide polymorphism (SNP) loci. Additionally, we include an Excel file with information on each of the 195 individuals, including PLINK family ID (FID) and individual ID (IID), breed/lineage, and birth year or sampling period.
DOI: 10.5061/dryad.mv2tk97/5
title: Physiological and lab data reported in Figs 5 and 6

description: These are raw data and Jmp outputs for CytOx data, development rate data, and MDH data reported in paper.
DOI: 10.5061/dryad.ns2517d/1
title: relative benefits of mutualists data for submission

description: This data file comprises four parts: (1) data for the analyses concerning the characters of figs and fig wasp communities and the effects of NPFWs on the relative benefits of the mutualists; (2) pedicel length data for the analyses concerning the oviposition preferences of pollinators; (3) ovipositor length data of adult female pollinators; (4) number of pollinator foundresses from unmatured figs.
DOI: 10.5061/dryad.r2f8b74/1
title: Lifestyle and socio-economic inequalities in diabetes prevalence in South Africa: a decomposition analysis

description: Data are taken from the 2012 South African National Health and Nutrition Examination Survey (SANHANES-1) undertaken in April to November 2012. Citation:  Shisana O, Labadarios D, Rehle T, Simbayi L, Zuma K, Dhansay A, Reddy P, Parker W, Hoosain E, Naidoo P, Hongoro C, Mchiza Z, Steyn NP, Dwane N, Makoae M, Maluleke T, Ramlagan S, Zungu N, Evans MG, Jacobs L, Faber M, & SANHANES-1 Team (2013) South African National Health and Nutrition Examination Survey (SANHANES-1). Cape Town: HSRC Press
DOI: 10.5061/dryad.r69v7gp/1
title: Occurrences

description: Occurrences of bird species in fragments and continuous forest.
DOI: 10.5061/dryad.r69v7gp/2
title: Landscapes

description: Landscapes parameters of fragments and continuous forests.
DOI: 10.5061/dryad.t778h30/1
title: O'BrienEtAl_HammingDistanceMatrix&SNPscoring
DOI: 10.5061/dryad.t778h30/2
title: O'BrienEtAl_Supplymentary material

description: SUPPLEMENTARY MATERIAL
Table S1. Repeated measures incurred by polyandrous females were avoided by only including one male mate, chosen randomly (a), for each polyandrous female when calculating mean HDV-mated and variance of HDV-mated. Alternatively, HDV-mated and variance of HDV-mated was calculated by including only the least related mate (b) and only the most related mate (c), per polyandrous female. Significance level different from those presented in the main document are highlighted in bold.
Table S2. Mean ± SD, variance and range of relatedness (HDV) for all actual female-male mates (identified by offspring genetic parentage) during each breeding event.
Table S3. Mean relatedness (HDV) and variance generated from 10,000 simulations of random pairings between all assigned mothers and all potential mates from each breeding event. Two-tailed 95% confidence intervals and significance values (HDV P-value and Variance P-value) indicate whether HDV mean and variance of actual mates (see Table 2) differed from randomly generated mean and variance values. Note: lower HDV equals greater relatedness.
DOI: 10.5061/dryad.t77f1p4/1
title: Microsatellite data for contemporary (2009-2017) and historic (1952-1964) bobcats

description: Each row contains a unique individual ID, sex, year of collection, state and town of capture, XY coordinates for the town centroid (NH state plane coordinate system), and genetic data formatted as allele1_allele2. Column names are microsatellite loci.
DOI: 10.17632/6vz2cwc82v.1
title: Data for: Frost evidences in tree rings linked to atmospheric circulation in northern Patagonian

description: Chronology of six sites and frost ring proportion
DOI: 10.17632/jjmsr84vgj.1
title: Data for: Musashi-1 Enhances Glioblastoma Migration by Promoting ICAM1 Translation

description: Left: Expression of MSI1, ICAM1, and LIN28 in GBM-U87MG/Ctrl, and GBM-U87MG/MSI1. Right: Expression of MSI1, ICAM1, and LIN28 in GBM-05MG/sh-Scr and GBM-05MG/sh-MSI1 cells. ß-actin was used as a loading control.
DOI: 10.5061/dryad.0vt4gm8/1
title: Walczyk _ Hersch-Green 2019_AJB_Dryad File_1
DOI: 10.5061/dryad.2ck7120/73
title: DNA24_ZFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA24
Marker: ZFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/74
title: DNA25_LFCR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA25
Marker: LFCR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/75
title: DNA25_MFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA25
Marker: MFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/76
title: DNA25_ZFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA25
Marker: ZFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/77
title: DNA26_LFCR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA26
Marker: LFCR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/78
title: DNA26_MFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA26
Marker: MFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/79
title: DNA26_ZFZR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA26
Marker: ZFZR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.2ck7120/80
title: DNA27_LFCR.tar

description: Fastq file with raw data of Illumina reads
Plate: DNA27
Marker: LFCR
Tag combinations to identify the samples from each fastq files are found in the 'CSV file with metadata on fastq files'
DOI: 10.5061/dryad.3472nk1/5
title: DNA sequences

description: DNA sequences of one mtDNA and seven introns used in this study
DOI: 10.5061/dryad.3472nk1/6
title: ReadMe for DRYAD deposit_Chen et al. (ME)

description: A README file describing the files deposited in the database.
DOI: 10.5061/dryad.3k5c0sh/20
title: JA14785_pool3_GTATTA_L004_R1 raw reads
DOI: 10.5061/dryad.3k5c0sh/22
title: JA14300_ddRAD_Pool1_CGTACG_L008_R1 raw reads
DOI: 10.5061/dryad.3k5c0sh/23
title: JA14300_ddRAD_Pool1_CGTACG_L008_R2 raw reads
DOI: 10.5061/dryad.3k5c0sh/24
title: JA14300_ddRAD_Pool1_CGTACG_L006_R1 raw reads
DOI: 10.5061/dryad.3k5c0sh/25
title: JA14300_ddRAD_Pool1_CGTACG_L006_R2 raw reads
DOI: 10.5061/dryad.3k5c0sh/26
title: JA14300_ddRAD_Pool2_TAAGAA_L008_R1 raw reads
DOI: 10.5061/dryad.3k5c0sh/27
title: JA14300_ddRAD_Pool2_TAAGAA_L008_R2 raw reads
DOI: 10.5061/dryad.3k5c0sh/28
title: JA14300_ddRAD_Pool3_ACGATT_L008_R1 raw reads
DOI: 10.5061/dryad.413d4t5/1
title: in vivo and ex vivo data
DOI: 10.5061/dryad.475bv7s/1
title: Plasticity_experiment
DOI: 10.5061/dryad.475bv7s/2
title: Plasticity_experiment_analyzing script
DOI: 10.5061/dryad.475bv7s/3
title: Predator_Selection_experiment
DOI: 10.5061/dryad.475bv7s/4
title: Predator_Selection_experiment_Analyzing_script
DOI: 10.5061/dryad.6d4p06g/1
title: raw_data_thermal_experiment

description: This data file contains information related to outcomes of the thermal experiments performed with different species of the Mediterranean coralligenous assemblages in 2012 and 2017.
DOI: 10.5061/dryad.6j97p92/1
title: UGA-Emory honey bee studies

description: The Pilot study started in 2014 using 6 apiaries each consisting of 7 colonies		
	- In 3 apiaries the colonies were placed in a circle with entrances facing out and 2 meters separating colonies	
	- In 3 apiaries the colonies were placed in a circle with entrances facing out and 10 meters separating colonies	
The ED study started in 2015 using 6 apiaries each consisting of 8 colonies		
	- In 3 apiaries the colonies were placed in a line with all entrances facing the same direction and 2 meters separating colonies	
	- In 3 apiaries the colonies were placed in a circle with entrances facing out and 10 meters separating colonies	
The TO study started in 2016 using 10 apiaries consisting of 14 colonies		
	- In 5 apiaries 2 colonies were inoculated with mites expected to be of high virulence	
	- In 5 apiaries 2 colonies were inoculated with mites expected to be of low virulence	
The VA study started in 2015		
	- 8 apiaries each with 10 colonies	
The CI study started in 2014		
	- HM, LM, and F bees inoculated with HM, LM, or F mites	
In each study colonies were initially cleared of mites and then 2 colonies in each apiary were randomly chosen to inoculate with mites		
	- In the pilot study colonies were inoculated once	
	- In the ED study colonies were inoculated twice	
Variables		
	- wave = sequential month since start of experiment	
	- sticky.screen.72hrs = standard Varroa measurement tool - sticky screen left under colony for 72 hours and mites that are trapped are counted - date indicates when screen first placed	
		- note: sometimes sticky screens could not be left for exactly 72 hours; in these cases the mite count is prorated to 72hours
	- queen.status = whether the colony is queen right or not or whether there is a virgin queen	
	- mite inoculation = record of date of inoculation and how many mites were added to the colony	
	- colony.weight.kg = the colony weight is measured in kilograms	
	- alcohol.mite.count.300bees = appoximately 300 bees are rinsed in alcohol to remove mites 	
		- note: measurement values are prorated to 300 bees
	- adult.bees.A & B = each side of each frame is examined in a colony. A percentage score for these frames are recorded (ex. adult bees make up 50% of a frame)	
		the percentages for the colony are added together to get the final measurement. In order to reduce error associated with different workers measurements 
		two people measure each colony and the final measurements are averaged (*note: in the CI study only one measurement was taken but this was recorded
		twice to make it consistent with the existing R code)
	- brood.coverage.A & B = same measurement procedure as above but for brood instead of adult bees
DOI: 10.5061/dryad.6t1m4k4/10
title: GC-MS Raw Data (RARRES1 siRNA)

description: CSV files and raw data files are included in the zip file. RARRES1 siRNA and scrambled siRNA samples were run.
DOI: 10.5061/dryad.6t1m4k4/11
title: Sample Annotations for GC-MS and LC-MS Runs

description: Description of runs and sample annotations for GC-MS and LC-MS are included.
DOI: 10.5061/dryad.6t1m4k4/12
title: LC-MS Raw Data RARRES1 KD (1) (xaa)

description: We split the LC-MS raw data using the "Split" Linux function into 4 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/13
title: LC-MS Raw Data RARRES1 KD (2) (xab)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/14
title: LC-MS Raw Data RARRES1 KD (3) (xac)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/15
title: LC-MS Raw Data RARRES1 KD (4) (xad)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/16
title: LC-MS Raw Data RARRES1 KD (5) (xae)

description: We split the LC-MS raw data using the "Split" Linux function into 17 files (combine using "cat xaa xab ... &gt; lcms.zip")
DOI: 10.5061/dryad.6t1m4k4/9
title: RARRES1 Co-expression Data

description: OncomineTM (Compendia Bioscience, Ann Arbor, MI, USA) was used to identify cancers where RARRES1 gene expression was significantly upregulated or downregulated. These cancers included breast, cervical, colorectal, esophageal, gastric, head and neck, kidney, liver, lung, lymphoma, pancreatic and prostate (S1 Table from OncomineTM). Of the identified cancers, three (breast, colorectal and prostate) were selected for further analysis given the number of datasets found to have significant RARRES1 gene expression changes as well as the literature known about RARRES1 and its molecular biology within these cancers. Within the cancers selected, individual datasets were chosen given their large sample sizes and subtype analyses. Thus, The Cancer Genome Atlas (TCGA) Breast Cancer, TCGA Colorectal Cancer, and Grasso Prostate datasets were selected. The Grasso Prostate dataset was also uniquely selected for its metastatic vs. primary analysis (21). For the TCGA Breast Cancer dataset, subtype analysis was stratified into ER+ vs. ER- status; PR+ vs. PR- status and Triple Negative (PR-, HER2- & ER-) vs. non-Triple Negative (22). Metastatic vs. primary site analysis was performed in the Grasso Prostate dataset. All colorectal cancer types (rectal mucinous adenocarcinoma, colon adenocarcinoma, rectal adenocarcinoma, colon mucinous adenocarcinoma and cecum  adenocarcinoma) identified in the TCGA dataset were also analyzed in comparison to their respective normal samples (S1 File) (23). 			
Genes positively or negatively co-expressed with RARRES1 were further identified using OncomineTM with respect to each dataset of tumor vs. normal.
DOI: 10.5061/dryad.7n42q35/2
title: Data files from Reticulate evolution in Nuclear Middle America causes discordance in the phylogeny of palm-pitvipers (Viperidae: Bothriechis)

description: This DRYAD package contains the input files and data used for the project: Reticulate evolution in Nuclear Middle America causes discordance in the phylogeny of palm-pitvipers (Viperidae: Bothriechis). These include command files and data for maximum likelihood and coalescence-based species tree phylogenetic estimation, reticulate evolution inference methods using Phylonet, SNaQ, and Treemix, calibration based tree dating with MCMCtree, and ancestral area reconstruction with BioGeoBEARS.
DOI: 10.5061/dryad.84q73s8.2
title: Data from: Neuromuscular adverse events associated with Anti-PD-1 monoclonal antibodies: systematic review
DOI: 10.5061/dryad.84q73s8.2/1.2
title: Data_Dryad
DOI: 10.5061/dryad.84q73s8.2/2.2
title: Search protocol
DOI: 10.5061/dryad.8b9j040/4
title: Suppdata3_DV_weight_and_survival

description: Leaf consumption rates by Dikerogammarus villosus individuals, and their survival, over a roughly two-week experiment
DOI: 10.5061/dryad.8t8h54h/2
title: Dunn et al. Supplementary Figures

description: Supplementary figures describing the locality and stratigraphic context for specimens described in this article, as well as providing further field specimens of Arborea arborea.
DOI: 10.5061/dryad.9mj20tn/1
title: Majekovaetal_FunctionalEcology_2019
DOI: 10.5061/dryad.9r2p3ks/1
title: Fasta file of predicted transcripts mRNA sequence above 10 Kbp

description: The following is a fasta file of the predicted transcripts from the Maker Genome annotation for all scaffolds greater than 10 kilobase in length
DOI: 10.5061/dryad.c06p34h/10
title: Jury and Toonen. Proc B. Temp.offshore

description: Available offshore seawater temperature data (deg C) covering the study period.
DOI: 10.5061/dryad.c06p34h/11
title: Jury and Toonen. Proc B. Temp.KB

description: Available seawater temperature data (deg C) from Kane'ohe Bay covering the study period.
DOI: 10.5061/dryad.c06p34h/12
title: Jury and Toonen. Proc B. Temp.WB

description: Available seawater temperature data (deg C) for Waimanalo Bay covering the study period.
DOI: 10.5061/dryad.c06p34h/13
title: Jury and Toonen. Proc B. Temp.anomaly.KB

description: Seawater temperature anomalies in Kane'ohe Bay relative to offshore waters (deg C) covering the study period.
DOI: 10.5061/dryad.c06p34h/14
title: Jury and Toonen. Proc B. Temp.anomaly.WB

description: Seawater temperature anomalies in Waimanalo Bay relative to offshore waters (deg C) covering the study period.
DOI: 10.5061/dryad.c06p34h/8
title: Jury and Toonen. Proc B. pCO2.diel

description: pCO2 (uatm) values calculated from samples taken every 6 hr during the diel sampling period. Columns correspond to each aquarium in the experiment with tank number and target temperature and pH conditions as indicated.
DOI: 10.5061/dryad.c06p34h/9
title: Jury and Toonen. Proc B. Omega.arag.diel

description: Aragonite saturation state values calculated from samples taken every 6 hr during the diel sampling period. Columns correspond to each aquarium in the experiment with tank number and target temperature and pH conditions as indicated.
DOI: 10.5061/dryad.cq408t7/3
title: Appendix 2 wild-caught data

description: Appendix 2 wild-caught data
DOI: 10.5061/dryad.cq408t7/4
title: Appendix 2 Trait evolution data

description: Appendix 2 Trait evolution data
DOI: 10.5061/dryad.d20221b/2
title: Conductivity natal experiment Run 1 - trials

description: Oivposition of Chironomus tepperi raised in two natal environments to four conductivity treatments
DOI: 10.5061/dryad.d20221b/3
title: conspecific_analysis

description: Oviposition of Chironomus tepperi in relation to visual and chemical cues from conspecifics
DOI: 10.5061/dryad.d20221b/4
title: egg_hatching_NSW_popn

description: Egg hatching of Chironomus tepperi across a gradient of conductivities
DOI: 10.5061/dryad.d20221b/5
title: humic acid analysis

description: Oviposition of Chironomus tepperi in response to humic acid
DOI: 10.5061/dryad.d20221b/6
title: larval_growth_analysis

description: Growth of larval Chironomus tepperi in different conductivities
DOI: 10.5061/dryad.d20221b/7
title: larval_survival_analysis

description: Survival of larval Chironomus tepperi across different conductivities
DOI: 10.5061/dryad.d20221b/8
title: wetland_choice_analysis

description: Oviposition of Chironomus tepperi in water collected from four stormwater wetlands
DOI: 10.5061/dryad.d9d83q1/1
title: Mount St. Helens Plant Species Composition Data

description: This file contains community percent cover data for blast, blowdown, and tephra zone plots at Mount St. Helens for years 1980-2016. Portions of this dataset have been published previously in del Moral 2010 (Ecological Archives E091-152) and Fischer et al. 2018 (Dryad Digital Repository. https://doi.org/10.5061/dryad.j2k54s8). Contact the authors directly with any questions and clarifications.
DOI: 10.5061/dryad.m55q9p0/1
title: Mean trait data

description: mean trait data for species
DOI: 10.5061/dryad.m55q9p0/2
title: R script for OUwie analysis on head-body elongation ratio

description: R script for OUwie analysis on head-body elongation ratio. R scripts for the remaining traits (e.g. AEI_C, AEI_T, AEI_L, etc.) are exactly the same and thus are not uploaded. Just replace "hbER" with "AEI_C" and etc.
DOI: 10.5061/dryad.m55q9p0/3
title: R script for PGLS analyses

description: R script for PGLS analyses
DOI: 10.5061/dryad.md4s537/1
title: Hinokidani and Nakanishi 2019a

description: Analytical data on hydrogen ion content (pH), phenolics and dissolved iron of sediment samples.
DOI: 10.5061/dryad.p3g44gh/1
title: AES delivery scores

description: Data in this file were used to address this question: Are AES a successful mechanism for delivering conservation grazing?
DOI: 10.5061/dryad.p3g44gh/2
title: AES prescription scores

description: Data in this file were used to address the following: To what extent is AES agreement wording fit for purpose?
DOI: 10.5061/dryad.p3g44gh/3
title: Conservation grazing aspect scores

description: Data in this file were used to address the question: Are sites achieving conservation grazing?
DOI: 10.5061/dryad.rh66vg2/1
title: Supplementary Information

description: This file includes: Table S1, Figures S1–S6, List of apomorphies within Saurischia, Dataset S1–2 captions, Taxon scorings, References
DOI: 10.5061/dryad.sh629f6/1
title: Pycnidia Count_Dryad

description: Development of pycnidial conidiomata and colony size of Phacidium lacerum in response to competition with other filamentous fungi over 7 days