cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5769180.v1
title: Climate mediates the biodiversity-ecosystem stability relationship globally

description: These data correspond to a study looking at the biodiversity-ecosystem stability relationship in global drylands. To do that, we merge satellite-based estimations of aboveground biomass (NDVI, 2000-2013), climatic dataset (FetchClimate) and a global field survey of plant diversity and functional traits.<br>
DOI: 10.6084/m9.figshare.5769144
title: Illustrations of flowers and pollinators

description: The illustrations of flower and pollinator species.
DOI: 10.6084/m9.figshare.5769099
title: South African ICT4D papers 2003 - 2016

description: Title: Collaboration towards a more inclusive society: the case of South African ICT4D researchers<b>Abstract. </b>In this study, research collaboration in the context of South African Information and Communication for Development (ICT4D) researchers was investigated using a mixed methods approach. South Africa provides a worthy context for ICT4D research, with stark development challenges and on the other hand, a well-established ICT infrastructure. Firstly, a quantitative analysis of South African research collaboration between 2003 and 2016 was conducted to determine the existing research collaboration patterns of South African ICT4D researchers. This is based on the publications in three top ICT4D journals namely the Electronic Journal of Information Systems in Developing Countries (EJISDC), Information Technologies & International Development (ITID), and Information Technology for Development (ITD). The results show that most papers were co-authored, mostly through intra-institutional collaboration with limited inter-institutional collaboration between South African authors or between South African and other African authors. Secondly, interviews were conducted with South African researchers who emerged as inter- and intra-institutional collaborators to gain insight into the technology, drivers and barriers affecting South African research collaboration. We report our findings and discuss the implications for employing research collaboration as a mechanism for addressing inequality and supporting inclusion.
DOI: 10.6084/m9.figshare.5769099.v2
title: South African ICT4D papers 2003 - 2016

description: Title: Collaboration towards a more inclusive society: the case of South African ICT4D researchers<b>Abstract. </b>In this study, research collaboration in the context of South African Information and Communication for Development (ICT4D) researchers was investigated using a mixed methods approach. South Africa provides a worthy context for ICT4D research, with stark development challenges and on the other hand, a well-established ICT infrastructure. Firstly, a quantitative analysis of South African research collaboration between 2003 and 2016 was conducted to determine the existing research collaboration patterns of South African ICT4D researchers. This is based on the publications in three top ICT4D journals namely the Electronic Journal of Information Systems in Developing Countries (EJISDC), Information Technologies & International Development (ITID), and Information Technology for Development (ITD). The results show that most papers were co-authored, mostly through intra-institutional collaboration with limited inter-institutional collaboration between South African authors or between South African and other African authors. Secondly, interviews were conducted with South African researchers who emerged as inter- and intra-institutional collaborators to gain insight into the technology, drivers and barriers affecting South African research collaboration. We report our findings and discuss the implications for employing research collaboration as a mechanism for addressing inequality and supporting inclusion.
DOI: 10.6084/m9.figshare.5769099.v1
title: South African ICT4D papers 2003 - 2016

description: Title: Collaboration towards a more inclusive society: the case of South African ICT4D researchers<b>Abstract. </b>Information and Communication for Development (ICT4D) research involve multiple development paths and heterogeneous possibilities that coexist in different development contexts yet there is the common goal of making a better world with Information and Communication Technology (ICT) though inclusion. Achieving this common goal involves collaboration on various knowledge sharing-related activities, including reviewing, examining, supervision, publishing and writing research proposals with other researchers. We refer to this process of knowledge sharing for maintaining and advancing the body of extant knowledge as research collaboration. In this study, scholarly collaboration in the contexts of South African ICT4D researchers was investigated using a mixed method approach. Firstly, the top three ICT4D journals namely EJISDC, ITD and ITID were selected. A quantitative analysis of South African research collaboration between 2003 and 2016 were conducted to determine the existing research collaboration patterns of South African ICT4D researchers. Of the 1064 articles published between 2003 and 2016 in EJISDC, ITD and ITID combined, 103 (9.68%) articles were contributed by 193 South African authors, with 23 (22.33%) single authored articles and 80 (77.66%) multi authored. The results show that most papers were co-authored, mostly through intra-institutional collaboration with limited inter-institutional collaboration between South African authors or between South African and other African authors. The existing international research collaboration patterns show that South African authors collaborate most frequently with the global north. Secondly, we conducted interviews with the South Africa authors identified as inter-institutional collaborators to understand the drivers, barriers and incentives. We abstract those into policy statements that identify the basic constructs and explore the forces that inhibit research collaboration while also identifying the drivers that incentivize collaboration. We report and generalize our findings, discuss the practical implications, and identify opportunities for future research.
DOI: 10.6084/m9.figshare.5769096
title: Dataset for: A Bayesian Confirmatory Factor Model for Multivariate Observations in the Form of Two-Way Tables of Data

description: Researchers collected multiple measurements on schizophrenia (SZ) patients and their relatives, as well as control subjects and their relatives, to study vulnerability factors for schizophrenics and their near relatives. Observations across individuals from the same family are correlated, and also the multiple outcome measures on the same individuals are correlated. Traditional data analyses model outcomes separately and thus do not provide information about the interrelationships among outcomes. We propose a novel Bayesian Family Factor Model (BFFM), which extends the classical confirmatory factor analysis (CFA) model to explain the correlations among observed variables using a combination of family-member factors and outcome factors.Traditional methods for fitting CFA models, such as full information maximum likelihood (FIML) estimation using quasi-Newton optimization (QNO) can have convergence problems and Heywood cases (lack-of-convergence) caused by empirical under-identification. In contrast, modern Bayesian Markov chain Monte Carlo handles these inference problems easily. Simulations compare the BFFM to FIML-QNO in settings where the true covariance matrix is identified, close to not identified and not identified. For these settings, FIML-QNO fails to fit the data in $13\%$, $57\%$ and $85\%$ of the cases, respectively, while MCMC provides stable estimates. When both methods successfully fit the data, estimates from the BFFM have smaller variances and comparable mean squared errors. We illustrate the BFFM by analyzing data on data from schizophrenics and their family members.
DOI: 10.6084/m9.figshare.5769096.v1
title: Dataset for: A Bayesian Confirmatory Factor Model for Multivariate Observations in the Form of Two-Way Tables of Data

description: Researchers collected multiple measurements on schizophrenia (SZ) patients and their relatives, as well as control subjects and their relatives, to study vulnerability factors for schizophrenics and their near relatives. Observations across individuals from the same family are correlated, and also the multiple outcome measures on the same individuals are correlated. Traditional data analyses model outcomes separately and thus do not provide information about the interrelationships among outcomes. We propose a novel Bayesian Family Factor Model (BFFM), which extends the classical confirmatory factor analysis (CFA) model to explain the correlations among observed variables using a combination of family-member factors and outcome factors.Traditional methods for fitting CFA models, such as full information maximum likelihood (FIML) estimation using quasi-Newton optimization (QNO) can have convergence problems and Heywood cases (lack-of-convergence) caused by empirical under-identification. In contrast, modern Bayesian Markov chain Monte Carlo handles these inference problems easily. Simulations compare the BFFM to FIML-QNO in settings where the true covariance matrix is identified, close to not identified and not identified. For these settings, FIML-QNO fails to fit the data in $13\%$, $57\%$ and $85\%$ of the cases, respectively, while MCMC provides stable estimates. When both methods successfully fit the data, estimates from the BFFM have smaller variances and comparable mean squared errors. We illustrate the BFFM by analyzing data on data from schizophrenics and their family members.
DOI: 10.6084/m9.figshare.5769093
title: Data file for IJFS

description: This is data file for IJFS
DOI: 10.6084/m9.figshare.5769093.v1
title: Data file for IJFS

description: This is data file for IJFS
DOI: 10.6084/m9.figshare.5769036
title: Additional file 3: of Insights into teleost sex determination from the Seriola dorsalis genome assembly

description: Tassel significance output for GWAS analysis for sex phenotype. (TXT 52 kb)
DOI: 10.6084/m9.figshare.5769036.v1
title: Additional file 3: of Insights into teleost sex determination from the Seriola dorsalis genome assembly

description: Tassel significance output for GWAS analysis for sex phenotype. (TXT 52 kb)
DOI: 10.6084/m9.figshare.5769015
title: Additional file 2: of Insights into teleost sex determination from the Seriola dorsalis genome assembly

description: SNP and InDels calls (VCF file) for scaffold containing sex determining region. (VCF 35715 kb)
DOI: 10.6084/m9.figshare.5769015.v1
title: Additional file 2: of Insights into teleost sex determination from the Seriola dorsalis genome assembly

description: SNP and InDels calls (VCF file) for scaffold containing sex determining region. (VCF 35715 kb)
DOI: 10.6084/m9.figshare.5769006
title: Additional file 2: of Epigenetic supersimilarity of monozygotic twin pairs

description: Supplementary tables. (XLSX 808 kb)
DOI: 10.6084/m9.figshare.5769006.v1
title: Additional file 2: of Epigenetic supersimilarity of monozygotic twin pairs

description: Supplementary tables. (XLSX 808 kb)
DOI: 10.6084/m9.figshare.5769003
title: Additional file 3; Figure S2. of Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice

description: Sequence alignment of the SUB1A-1 and SUB1A-2 upstream promoter regions. 2Â kb upstream of the start site (promoter regions) were analysed for SUB1A-1 and SUB1A-2 alleles and putative cis-regulatory elements were identified. (XLSX 3.76Â kb)
DOI: 10.6084/m9.figshare.5769003.v1
title: Additional file 3; Figure S2. of Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice

description: Sequence alignment of the SUB1A-1 and SUB1A-2 upstream promoter regions. 2Â kb upstream of the start site (promoter regions) were analysed for SUB1A-1 and SUB1A-2 alleles and putative cis-regulatory elements were identified. (XLSX 3.76Â kb)
DOI: 10.6084/m9.figshare.5768979
title: Additional file 2: Table S2. of De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

description: Database of the orthogroups containing Atlantic salmon RefSeq proteins (GCF_000233375.1), and the corresponding transcripts from four de novo protein-coding transcriptomes presented here; for Atlantic salmon, Brown trout, Arctic charr and European whitefish. (TSV 8775Â kb)
DOI: 10.6084/m9.figshare.5768979.v1
title: Additional file 2: Table S2. of De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

description: Database of the orthogroups containing Atlantic salmon RefSeq proteins (GCF_000233375.1), and the corresponding transcripts from four de novo protein-coding transcriptomes presented here; for Atlantic salmon, Brown trout, Arctic charr and European whitefish. (TSV 8775Â kb)
DOI: 10.6084/m9.figshare.5768961
title: Additional file 5: of Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

description: Presence and absence of carbohydrate clusters predicted and growth on those carbohydrates of all the strains. (XLS 62Â kb)
DOI: 10.6084/m9.figshare.5768961.v1
title: Additional file 5: of Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

description: Presence and absence of carbohydrate clusters predicted and growth on those carbohydrates of all the strains. (XLS 62Â kb)
DOI: 10.6084/m9.figshare.5768949
title: Additional file 4: of Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

description: Excel file containing the list of MCL cluster which differ between Bifidobacterium longum strain pairs APC1465 - APC1466, APC1477 - APC1478 and APC1462 - APC1464. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.5768949.v1
title: Additional file 4: of Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

description: Excel file containing the list of MCL cluster which differ between Bifidobacterium longum strain pairs APC1465 - APC1466, APC1477 - APC1478 and APC1462 - APC1464. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.5768910
title: Additional file 2: of Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

description: Excel file containing the SNPs identified between Bifidobacterium longum strain pairs APC1465 - APC1466, APC1477 - APC1478, and APC1462 - APC1464. (XLSX 1103Â kb)
DOI: 10.6084/m9.figshare.5768910.v1
title: Additional file 2: of Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

description: Excel file containing the SNPs identified between Bifidobacterium longum strain pairs APC1465 - APC1466, APC1477 - APC1478, and APC1462 - APC1464. (XLSX 1103Â kb)
DOI: 10.6084/m9.figshare.5768883
title: MOESM1 of Fast and accurate identification of cryptic and sympatric mayfly species of the Baetis rhodani group

description: Additional file 1. An excel file format containing data used to draw the scatterplot of Fig.Â 2b.
DOI: 10.6084/m9.figshare.5768883.v1
title: MOESM1 of Fast and accurate identification of cryptic and sympatric mayfly species of the Baetis rhodani group

description: Additional file 1. An excel file format containing data used to draw the scatterplot of Fig.Â 2b.
DOI: 10.6084/m9.figshare.5768778
title: Additional file 2: of Gene flow analysis method, the D-statistic, is robust in a wide parameter space

description: Detailed results from each dataset. Description: Input parameters, sensitivity, significance information and linear regression of the f-statistics, from all datasets in three simulation schemes. (XLSX 214 kb)
DOI: 10.6084/m9.figshare.5768778.v1
title: Additional file 2: of Gene flow analysis method, the D-statistic, is robust in a wide parameter space

description: Detailed results from each dataset. Description: Input parameters, sensitivity, significance information and linear regression of the f-statistics, from all datasets in three simulation schemes. (XLSX 214 kb)
DOI: 10.6084/m9.figshare.5768775
title: Additional file 3: of Understanding the relationship between egg- and antigen-based diagnostics of Schistosoma mansoni infection pre- and post-treatment in Uganda

description: Dataset. (CSV 21 kb)
DOI: 10.6084/m9.figshare.5768775.v1
title: Additional file 3: of Understanding the relationship between egg- and antigen-based diagnostics of Schistosoma mansoni infection pre- and post-treatment in Uganda

description: Dataset. (CSV 21 kb)
DOI: 10.6084/m9.figshare.5768709
title: MOESM4 of The utility of DNA extracted from saliva for genome-wide molecular research platforms

description: Additional file 4: Table S4. Pearsonâ s correlation coefficient between blood and saliva of probes cg05575921, cg05951221, cg11924019, cg23576855.
DOI: 10.6084/m9.figshare.5768709.v1
title: MOESM4 of The utility of DNA extracted from saliva for genome-wide molecular research platforms

description: Additional file 4: Table S4. Pearsonâ s correlation coefficient between blood and saliva of probes cg05575921, cg05951221, cg11924019, cg23576855.
DOI: 10.6084/m9.figshare.5768688
title: MOESM3 of The utility of DNA extracted from saliva for genome-wide molecular research platforms

description: Additional file 3: Table S3. List of probes showing moderate to strong within-individual correlation between saliva and whole blood samples.
DOI: 10.6084/m9.figshare.5768688.v1
title: MOESM3 of The utility of DNA extracted from saliva for genome-wide molecular research platforms

description: Additional file 3: Table S3. List of probes showing moderate to strong within-individual correlation between saliva and whole blood samples.
DOI: 10.6084/m9.figshare.5768664
title: MOESM2 of The utility of DNA extracted from saliva for genome-wide molecular research platforms

description: Additional file 2: Table S2. List of differentially methylated probes (FDR adjusted p-valueÂ
DOI: 10.6084/m9.figshare.5768664.v1
title: MOESM2 of The utility of DNA extracted from saliva for genome-wide molecular research platforms

description: Additional file 2: Table S2. List of differentially methylated probes (FDR adjusted p-valueÂ
DOI: 10.6084/m9.figshare.5768658
title: Additional file 9: of Habitat properties are key drivers of Borrelia burgdorferi (s.l.) prevalence in Ixodes ricinus populations of deciduous forest fragments

description: Model output Table S7. Nymphal infection prevalence. Table S8. Adult infection prevalence. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5768658.v1
title: Additional file 9: of Habitat properties are key drivers of Borrelia burgdorferi (s.l.) prevalence in Ixodes ricinus populations of deciduous forest fragments

description: Model output Table S7. Nymphal infection prevalence. Table S8. Adult infection prevalence. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5768655
title: MOESM1 of The utility of DNA extracted from saliva for genome-wide molecular research platforms

description: Additional file 1: Table S1. Pearsonâ s correlation coefficient matrix between individual samples.
DOI: 10.6084/m9.figshare.5768655.v1
title: MOESM1 of The utility of DNA extracted from saliva for genome-wide molecular research platforms

description: Additional file 1: Table S1. Pearsonâ s correlation coefficient matrix between individual samples.
DOI: 10.6084/m9.figshare.5768628
title: Additional file 3: of An IMD-like pathway mediates both endosymbiont control and host immunity in the cereal weevil Sitophilus spp.

description: List of primers used for dsRNA synthesis and RT-qPCR. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5768628.v1
title: Additional file 3: of An IMD-like pathway mediates both endosymbiont control and host immunity in the cereal weevil Sitophilus spp.

description: List of primers used for dsRNA synthesis and RT-qPCR. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5768610
title: Additional file 2: of An IMD-like pathway mediates both endosymbiont control and host immunity in the cereal weevil Sitophilus spp.

description: imd and relish inhibition by RNAi in S. zeamais (a) and S. oryzae (b). imd and relish expressions were measured by RT-qPCR in bacteriomes and carcasses. Tissues were dissected 6 h following either PBS or TCT injection, 6 days after gfp, imd, or relish dsRNA injection. Gene expression was normalized by the geometric mean of two housekeeping gene expressions, rpl29 and mdh. Raw data (mean ± SD) as well as inhibition percentages are provided. Percentages were calculated as follows: % = 1 − imd RNAi or relish RNAi gfp RNAi × 100 $$ \%=\left(1-\frac{imd\ \mathrm{RNAi}\ \mathrm{or}\ relish\ \mathrm{RNAi}\ }{gfp\ \mathrm{RNAi}\ }\right)\times 100 $$ ; using the mean of five independent measurements for each value. Asterisks indicate a significant difference between a condition and its corresponding gfp RNAi control based on a Welch’s t test (*p
DOI: 10.6084/m9.figshare.5768580
title: Additional file 2 of A patient-specific treatment model for Gravesâ hyperthyroidism

description: RMSE interval estimation. (XLS 155 kb)
DOI: 10.6084/m9.figshare.5768580.v1
title: Additional file 2 of A patient-specific treatment model for Gravesâ hyperthyroidism

description: RMSE interval estimation. (XLS 155 kb)
DOI: 10.6084/m9.figshare.5768574
title: Additional file 5: Table S6. of Habitat properties are key drivers of Borrelia burgdorferi (s.l.) prevalence in Ixodes ricinus populations of deciduous forest fragments

description: Loadings of all correlation factors. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.5768574.v1
title: Additional file 5: Table S6. of Habitat properties are key drivers of Borrelia burgdorferi (s.l.) prevalence in Ixodes ricinus populations of deciduous forest fragments

description: Loadings of all correlation factors. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.5768562
title: Additional file 1 of A patient-specific treatment model for Gravesâ hyperthyroidism

description: Gravesâ patients data. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.5768562.v1
title: Additional file 1 of A patient-specific treatment model for Gravesâ hyperthyroidism

description: Gravesâ patients data. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.5768556
title: MOESM7 of Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.)

description: Additional file 7. Details on the newly developed CAPS markers.
DOI: 10.6084/m9.figshare.5768556.v1
title: MOESM7 of Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.)

description: Additional file 7. Details on the newly developed CAPS markers.
DOI: 10.6084/m9.figshare.5768541
title: MOESM6 of Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.)

description: Additional file 6. Details on the potential CAPS sites for 25 restriction enzymes on A03, B01, B02 and B03 chromosomes of peanut.
DOI: 10.6084/m9.figshare.5768541.v1
title: MOESM6 of Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.)

description: Additional file 6. Details on the potential CAPS sites for 25 restriction enzymes on A03, B01, B02 and B03 chromosomes of peanut.
DOI: 10.6084/m9.figshare.5768535
title: Additional file 2: of Prior to extension, Transcriptomes of fibroblast-like Synoviocytes from extended and Polyarticular juvenile idiopathic arthritis are indistinguishable

description: FDR_results_table (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5768535.v1
title: Additional file 2: of Prior to extension, Transcriptomes of fibroblast-like Synoviocytes from extended and Polyarticular juvenile idiopathic arthritis are indistinguishable

description: FDR_results_table (XLSX 11 kb)