cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7835111
title: Phosphorus requirement and partitioning in oat cultivars

description: ABSTRACT: Maintenance fertilization changes with nutrient requirements and partitioning, but these are not well known for oat cultivars. The aim of this study was to evaluate whether phosphorus (P) requirements and partitioning vary among cultivars of oat (Avena sativa L.). The UPFA ‘Ouro’, UPFPS ‘Farroupilha’, IPR ‘Afrodite’, URS ‘FAPA Slava’, ‘Barbarasul’, ‘FAEM 007’, URS ‘Taura’, and ‘URS 21’ were cultivated in a Latosol with high P content in a greenhouse in 2015. Plants were sampled at physiological maturity and divided into roots, stem, leaves, and grain tissues. Phosphorus content and the dry matter weight of these parts were evaluated and the uptake amount and partitioning of P were estimated. The values of these variables differed across cultivars, except the P content in the grain (‘average’, 4.0g P kg-1). ‘Afrodite’ and ‘FAPA Slava’ have lower requirements and partitioning of P in the grain, but these did not vary among the other cultivars. Requirements and partitioning of P in stem and leaves increased in the following order: ‘Ouro’ and ‘Farroupilha’
DOI: 10.6084/m9.figshare.7835111.v1
title: Phosphorus requirement and partitioning in oat cultivars

description: ABSTRACT: Maintenance fertilization changes with nutrient requirements and partitioning, but these are not well known for oat cultivars. The aim of this study was to evaluate whether phosphorus (P) requirements and partitioning vary among cultivars of oat (Avena sativa L.). The UPFA ‘Ouro’, UPFPS ‘Farroupilha’, IPR ‘Afrodite’, URS ‘FAPA Slava’, ‘Barbarasul’, ‘FAEM 007’, URS ‘Taura’, and ‘URS 21’ were cultivated in a Latosol with high P content in a greenhouse in 2015. Plants were sampled at physiological maturity and divided into roots, stem, leaves, and grain tissues. Phosphorus content and the dry matter weight of these parts were evaluated and the uptake amount and partitioning of P were estimated. The values of these variables differed across cultivars, except the P content in the grain (‘average’, 4.0g P kg-1). ‘Afrodite’ and ‘FAPA Slava’ have lower requirements and partitioning of P in the grain, but these did not vary among the other cultivars. Requirements and partitioning of P in stem and leaves increased in the following order: ‘Ouro’ and ‘Farroupilha’
DOI: 10.6084/m9.figshare.7835120.v1
title: Palynological evidence of vegetation change during the last 10,000 years in the mid-valley of the Rio Doce, Brazil

description: ABSTRACT In order to reconstruct the vegetation history of the last 10.000 years, palynological analyses were carried out using 17 sedimentary samples of a core drilled in Parque Estadual do Rio Doce (PERD-MG). Twenty-one species of fern spores, 52 species of pollen grains and six species of fungi were identified. Phase 1 (10.375 - 9.350 cal. years BP) is characterized by a low concentration and diversity of pollen grains and is thus interpreted as a fluvial system with the presence of coarse-grained sediments. Phase 2 (9.062 - 8.195 cal. Years BP) is interpreted as a transition from a fluvial to lacustrine environment. Phase 3 (7.905 - 4.785 cal years BP) is characterized by increased trend of palynomorph concentration, highlighted by a high abundance and diversity of fern spores, which are indicative of a more a humid condition. The uppermost phase, Phase 4 (4.785 - 50 cal. Years AP), possessed a lower abundance of herbaceous flora, which is replaced by other vegetation groups (e.g. marsh, cerrado, Atlantic Forest). The uppermost sample represents the contemporary environment (~50 years), which is characterized as seasonally-flooded.
DOI: 10.6084/m9.figshare.7835096
title: Sensorial Ability, Mastication and Nutrition of Single-Implant Overdentures Wearers

description: Abstract The use of two-implant overdentures improves mastication of edentulous elderly patients. However, little is known about the effects of single-implant overdentures (SIO) on oral perception and masticatory function in such elders. This study compared the effects of conventional complete dentures (CD) and SIO on the oral sensorimotor ability (OSA), masticatory function, and nutritional intake of elderly people with residual alveolar mandibular height classified as Class III or IV according to the American College of Prosthodontics. Twelve elders first received new conventional CD, which were later converted to SIO. All variables were evaluated after use of each prosthesis for 2 months. To evaluate OSA, elders closed their eyes and orally identified test pieces prepared from raw carrots. A kinesiographic device was used to measure chewing movements during mastication of a test material (Optocal). Masticatory performance (MP) was determined with the sieving method, and a 3-day food diary verified nutrient intake based on a standard Brazilian Food Composition Table. Data were analyzed using the Wilcoxon signed rank test and Student’s paired t test (P &lt; 0.05). OSA results did not differ according to prosthesis type. However, opening and closing velocities during chewing and MP increased after SIO insertion (P &lt; 0.05). Although no difference was observed in the intake of most nutrients, sodium ingestion decreased after SIO insertion (P &lt; 0.05). SIO use had no effect on OSA, but significantly improved mastication and sodium intake of elders with decreased residual ridges height (Brazilian Registry of Clinical Trials #RBR-3kgttj).
DOI: 10.6084/m9.figshare.7835102
title: Effect of Conditioning Protocols and Ultrasonic Application of an Infiltrant Resin in White Spot Lesions

description: Abstract The aim of this study was to evaluate different conditioning protocols and sonic/ultrasonic application of an infiltrant resin (IR) in artificial white spot lesions (AWSL). the V/L surfaces of 48 molars were induced to an AWSL and divided in 6 groups, according to the conditioning protocols and application technique: 15% hydrochloric acid (HA) + manual application of the IR; HA + 37% phosphoric acid (PA) + manual application of the IR; HA + ultrasonic application (U) of the IR; HA + sonic application (S) of the IR; PA+HA+S; and PA+HA+U. For the Penetration Depth (PD), the crowns were etched with HA for 120s. The IR Icon® (DMG) was applied according to the manufacturer`s instructions. The crowns were dye penetrated (0.1% red fluorophore rhodamine B isothiocyanate for 12h) and bleached with 30% hydrogen peroxide for 12 h. The discs were immersed in a 50% ethanol solution, containing 100 µM of sodium fluorescein. The PD (in µm) was measured using confocal laser scanning microscopy (20x). The bond strength (BS) was performed by michoshear test (0.5 mm/min). Data were submitted to 2-way ANOVA and Tukey (α=0.05). For BS, the interaction was not significant (p&gt;0.05). For PD, the main factors were significant (application - p&lt;0.001; conditioning technique - p=0.003). The ultrasonic application showed the highest PD values. PA+HA presented higher results than HA. The sonic/ultrasonic applications and the use of phosphoric acid prior to hydrochloric acid improved PD of the infiltrant resin. Conditioning protocols or application techniques did not influence BS values.
DOI: 10.6084/m9.figshare.7835105
title: Genetic diversity and population structure of naturally rare Calibrachoa species with small distribution in southern Brazil

description: Abstract Calibrachoa is a South-American genus comprising 27 species, several considered endemic or rare; few were subjects in genetic studies. We attempted to generate new data about the phylogenetically related and rare species C. eglandulata, C. sendtneriana, C. serrulata, and C. spathulata concerning their genetic diversity and population structure, which, coupled with their known restricted distribution, could help access their conservation status and contribute to the study of the Brazilian biodiversity. We sequenced 88 individuals for plastid intergenic spacers and genotyped 186 individuals for five microsatellite loci. Compared among each other, C. sendtneriana and C. serrulata presented the highest values of genetic diversity [π% (sd) = 0.23 (0.14) and 0.43 (0.25), respectively], followed by C. spathulata [π% (sd) = 0.19 (0.12)] and C. eglandulata [π% (sd) = 0.02 (0.03)]. Population differentiation was evident for these latter species, whereas it was not significant for C. sendtneriana and C. serrulata. Factors such as habitat specificity and fragmentation, pollination syndrome, and life history could explain the observed patterns. Based on the new genetic data and the species’ biology, a conservation status was assigned for C. sendtneriana and the status of the other three species was reviewed.
DOI: 10.6084/m9.figshare.7835096.v1
title: Sensorial Ability, Mastication and Nutrition of Single-Implant Overdentures Wearers

description: Abstract The use of two-implant overdentures improves mastication of edentulous elderly patients. However, little is known about the effects of single-implant overdentures (SIO) on oral perception and masticatory function in such elders. This study compared the effects of conventional complete dentures (CD) and SIO on the oral sensorimotor ability (OSA), masticatory function, and nutritional intake of elderly people with residual alveolar mandibular height classified as Class III or IV according to the American College of Prosthodontics. Twelve elders first received new conventional CD, which were later converted to SIO. All variables were evaluated after use of each prosthesis for 2 months. To evaluate OSA, elders closed their eyes and orally identified test pieces prepared from raw carrots. A kinesiographic device was used to measure chewing movements during mastication of a test material (Optocal). Masticatory performance (MP) was determined with the sieving method, and a 3-day food diary verified nutrient intake based on a standard Brazilian Food Composition Table. Data were analyzed using the Wilcoxon signed rank test and Student’s paired t test (P &lt; 0.05). OSA results did not differ according to prosthesis type. However, opening and closing velocities during chewing and MP increased after SIO insertion (P &lt; 0.05). Although no difference was observed in the intake of most nutrients, sodium ingestion decreased after SIO insertion (P &lt; 0.05). SIO use had no effect on OSA, but significantly improved mastication and sodium intake of elders with decreased residual ridges height (Brazilian Registry of Clinical Trials #RBR-3kgttj).
DOI: 10.6084/m9.figshare.7835102.v1
title: Effect of Conditioning Protocols and Ultrasonic Application of an Infiltrant Resin in White Spot Lesions

description: Abstract The aim of this study was to evaluate different conditioning protocols and sonic/ultrasonic application of an infiltrant resin (IR) in artificial white spot lesions (AWSL). the V/L surfaces of 48 molars were induced to an AWSL and divided in 6 groups, according to the conditioning protocols and application technique: 15% hydrochloric acid (HA) + manual application of the IR; HA + 37% phosphoric acid (PA) + manual application of the IR; HA + ultrasonic application (U) of the IR; HA + sonic application (S) of the IR; PA+HA+S; and PA+HA+U. For the Penetration Depth (PD), the crowns were etched with HA for 120s. The IR Icon® (DMG) was applied according to the manufacturer`s instructions. The crowns were dye penetrated (0.1% red fluorophore rhodamine B isothiocyanate for 12h) and bleached with 30% hydrogen peroxide for 12 h. The discs were immersed in a 50% ethanol solution, containing 100 µM of sodium fluorescein. The PD (in µm) was measured using confocal laser scanning microscopy (20x). The bond strength (BS) was performed by michoshear test (0.5 mm/min). Data were submitted to 2-way ANOVA and Tukey (α=0.05). For BS, the interaction was not significant (p&gt;0.05). For PD, the main factors were significant (application - p&lt;0.001; conditioning technique - p=0.003). The ultrasonic application showed the highest PD values. PA+HA presented higher results than HA. The sonic/ultrasonic applications and the use of phosphoric acid prior to hydrochloric acid improved PD of the infiltrant resin. Conditioning protocols or application techniques did not influence BS values.
DOI: 10.6084/m9.figshare.7835105.v1
title: Genetic diversity and population structure of naturally rare Calibrachoa species with small distribution in southern Brazil

description: Abstract Calibrachoa is a South-American genus comprising 27 species, several considered endemic or rare; few were subjects in genetic studies. We attempted to generate new data about the phylogenetically related and rare species C. eglandulata, C. sendtneriana, C. serrulata, and C. spathulata concerning their genetic diversity and population structure, which, coupled with their known restricted distribution, could help access their conservation status and contribute to the study of the Brazilian biodiversity. We sequenced 88 individuals for plastid intergenic spacers and genotyped 186 individuals for five microsatellite loci. Compared among each other, C. sendtneriana and C. serrulata presented the highest values of genetic diversity [π% (sd) = 0.23 (0.14) and 0.43 (0.25), respectively], followed by C. spathulata [π% (sd) = 0.19 (0.12)] and C. eglandulata [π% (sd) = 0.02 (0.03)]. Population differentiation was evident for these latter species, whereas it was not significant for C. sendtneriana and C. serrulata. Factors such as habitat specificity and fragmentation, pollination syndrome, and life history could explain the observed patterns. Based on the new genetic data and the species’ biology, a conservation status was assigned for C. sendtneriana and the status of the other three species was reviewed.
DOI: 10.6084/m9.figshare.7835081
title: Does the expression of the ACVR2A gene affect the development of colorectal cancer?

description: Abstract Colorectal cancer has become a serious problem, especially in highly developed countries. As reported by the World Health Organization, the number of colon cancer cases in the world in 2012 amounted to 1.36 million. It is the second most common cancer in females (614,000 cases, 9.2% of the total) and the third in males (746,000 cases, 10.0% of the total) worldwide. It is believed that TGFβ pathway elements are involved in the pathogenesis of colorectal cancer. This study assessed one of these elements, the ACVR2A gene. Qualitative and quantitative analyses of the ACVR2A gene in 84 patients with colorectal cancer was performed. There was no statistically significant association between ACVR2A gene expression and age, gender, histological type, grading of tumor, vascular invasion, and presence of lymphocytes in tumor tissue. No association was observed between the ACVR2A gene expression level and the presence of metastases in regional lymph nodes and distant metastases. In this study, larger tumors (T3 and T4) were characterized by higher ACVR2A expression compared to smaller tumors (T1 and T2). This may indicate an association between ACVR2A expression and the severity of pathological changes in the tumor growth process.
DOI: 10.6084/m9.figshare.7835084
title: The complete chloroplast genome sequences of three Spondias species reveal close relationship among the species

description: Abstract This study reports the complete chloroplast sequences of three Spondias species. The genome sequences were obtained for Spondias tuberosa, Spondias bahienses, and Spondias mombin using the Illumina sequencing technology by a combination of de novo methods and a reference-guided assembly using Sapindus mukorossi as reference. The genomes of S. tuberosa, S. bahiensis, and S. mombin had 162,036, 162,218, and 162,302 bp, respectively. The coding regions exhibited 130 genes, including 34–35 tRNAs and 4 rRNAs. The results revealed synteny among the genomes, with high conservation in the gene order and content and CG content. The inverted repeat regions (IRA and IRB) and the large and small single copies were very similar among the three genomes. The phylogenomic analysis reported similar topologies as that of previous studies, which used partial chloroplast, wherein S. mombin was the first diverging lineage, while S. tuberosa and S. bahiensis were derived, indicating that the phylogenetic analysis using partial or complete genome produces similar results. In summary, (1) we presented the first complete chloroplast genome for the genus Spondias, (2) phylogenies analyzed using the complete chloroplast genomes revealed a robust phylogenetic topology for Spondias, and (3) gene order, content, and orientation in Spondias are highly conserved.
DOI: 10.6084/m9.figshare.7835087
title: Polymorphism of Sooty-fronted Spinetail (Synallaxis frontalis Aves: Furnariidae): Evidence of chromosomal rearrangements by pericentric inversion in autosomal macrochromosomes

description: Abstract The Passeriformes is the most diverse and cytogenetically well-known clade of birds, comprising approximately 5,000 species. The sooty-fronted spinetail (Synallaxis frontalis Aves: Furnariidae) species, which belongs to the order Passeriformes, is typically found in South America, where it is widely distributed. Polymorphisms provide genetic variability, important for several evolutionary processes, including speciation and adaptation to the environment. The aim of this work was to analyze the possible cytotypes and systemic events involved in the species polymorphism. Of the sampled 19 individuals, two thirds were polymorphic, an event supposedly linked to mutations resulting from genomic evolution that can be transmitted hereditarily. A chromosomal polymorphism was detected between the 1st and 3rdpairs of autosomal macrochromosomes. This type of polymorphism is related to a pericentric inversion in regions involving chromosomal rearrangements. Differently from other polymorphism studies that report a link between polymorphic chromosomes and phenotypic changes, S. frontalis did not present any morphological variation in the sampled individuals.
DOI: 10.6084/m9.figshare.7835093
title: Draft genome of Thermomonospora sp. CIT 1 (Thermomonosporaceae) and in silico evidence of its functional role in filter cake biomass deconstruction

description: Abstract The filter cake from sugar cane processing is rich in organic matter and nutrients, which favors the proliferation of microorganisms with potential to deconstruct plant biomass. From the metagenomic data of this material, we assembled a draft genome that was phylogenetically related to Thermomonospora curvata DSM 43183, which shows the functional and ecological importance of this bacterium in the filter cake. Thermomonospora is a gram-positive bacterium that produces cellulases in compost, and it can survive temperatures of 60 ºC. We identified a complete set of biomass depolymerizing enzymes in the draft genome of Thermomonospora sp. CIT 1, such as α-amylase, catalase-peroxidases, β-mannanase, and arabinanase, demonstrating the potential of this bacterium to deconstruct the components of starch, lignin, and hemicellulose. In addition, the draft genome of Thermomonospora sp. CIT 1 contains 18 genes that do not share identity with five other species of Thermomonospora, suggesting that this bacterium has different genetic characteristics than those present in genomes reported so far for this genus. These findings add a new dimension to the current understanding of the functional profile of this microorganism that inhabits agro-industrial waste, which may boost new gene discoveries and be of importance for application in the production of bioethanol.
DOI: 10.6084/m9.figshare.7835087.v1
title: Polymorphism of Sooty-fronted Spinetail (Synallaxis frontalis Aves: Furnariidae): Evidence of chromosomal rearrangements by pericentric inversion in autosomal macrochromosomes

description: Abstract The Passeriformes is the most diverse and cytogenetically well-known clade of birds, comprising approximately 5,000 species. The sooty-fronted spinetail (Synallaxis frontalis Aves: Furnariidae) species, which belongs to the order Passeriformes, is typically found in South America, where it is widely distributed. Polymorphisms provide genetic variability, important for several evolutionary processes, including speciation and adaptation to the environment. The aim of this work was to analyze the possible cytotypes and systemic events involved in the species polymorphism. Of the sampled 19 individuals, two thirds were polymorphic, an event supposedly linked to mutations resulting from genomic evolution that can be transmitted hereditarily. A chromosomal polymorphism was detected between the 1st and 3rdpairs of autosomal macrochromosomes. This type of polymorphism is related to a pericentric inversion in regions involving chromosomal rearrangements. Differently from other polymorphism studies that report a link between polymorphic chromosomes and phenotypic changes, S. frontalis did not present any morphological variation in the sampled individuals.
DOI: 10.6084/m9.figshare.7835093.v1
title: Draft genome of Thermomonospora sp. CIT 1 (Thermomonosporaceae) and in silico evidence of its functional role in filter cake biomass deconstruction

description: Abstract The filter cake from sugar cane processing is rich in organic matter and nutrients, which favors the proliferation of microorganisms with potential to deconstruct plant biomass. From the metagenomic data of this material, we assembled a draft genome that was phylogenetically related to Thermomonospora curvata DSM 43183, which shows the functional and ecological importance of this bacterium in the filter cake. Thermomonospora is a gram-positive bacterium that produces cellulases in compost, and it can survive temperatures of 60 ºC. We identified a complete set of biomass depolymerizing enzymes in the draft genome of Thermomonospora sp. CIT 1, such as α-amylase, catalase-peroxidases, β-mannanase, and arabinanase, demonstrating the potential of this bacterium to deconstruct the components of starch, lignin, and hemicellulose. In addition, the draft genome of Thermomonospora sp. CIT 1 contains 18 genes that do not share identity with five other species of Thermomonospora, suggesting that this bacterium has different genetic characteristics than those present in genomes reported so far for this genus. These findings add a new dimension to the current understanding of the functional profile of this microorganism that inhabits agro-industrial waste, which may boost new gene discoveries and be of importance for application in the production of bioethanol.
DOI: 10.6084/m9.figshare.7835072
title: Patterns of richness and distribution of Cactaceae in the Serra da Mantiqueira, Southeast Brazil, and implications for its conservation

description: Abstract This study aimed to analyze patterns of richness and distribution of Cactaceae in the Serra da Mantiqueira (SM), a mountain range located in Southeast Brazil, and assess its conservation status. We compiled distribution data from the literature and 16 herbaria and plotted it on a map divided into grid squares of 0.5°. Richness, collection effort and similarity among grid squares were analyzed for the 33 taxa recorded in SM (five of which are endemic). Maciço do Itatiaia (in southern SM), Serra do Brigadeiro and Serra do Caparaó (in northern SM) are the richest areas. Collection effort and richness were correlated (R²=0.75). Similarity analysis revealed five clusters, one of which is composed of high elevation areas with a vegetation mosaic; the remaining clusters lack biogeographic significance, and are mainly composed of widely distributed species. Ten species had no records in any state or national conservation unit of integral protection, at least two of which are threatened with extinction. Species of Cactaceae deserve attention because several taxa are threatened and/or endemic, and because the majority of SM is environmentally degraded. These findings highlight the need for urgent conservation actions for the local biodiversity of SM.