cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15529899
title: Inhibiting cavitation: The role of insoluble surfactants in coating hydrophobic defects - Simulation inputs

description: This repository contains GROMACS input files for performing pressure ramp molecular dynamics simulations of a lipid bilayer, lipid-coated surface, and lipid-coated surfaces featuring a pit-like defect.

 

GROMACS input files

All relevant input files are located in the 'gromacs_input_files' directory: initial configurations, gromacs .mdp parameter files, force field files, and water model files.Folder names 0.5nm, 0.7nm, 1nm, and 2nm refer to the radius of the pit.

 

Python code

Python scripts for setting up and analyzing pressure ramp simulations are available in a separate Zenodo repository:https://zenodo.org/records/14678800
DOI: 10.5281/zenodo.15529900
title: Inhibiting cavitation: The role of insoluble surfactants in coating hydrophobic defects - Simulation inputs

description: This repository contains GROMACS input files for performing pressure ramp molecular dynamics simulations of a lipid bilayer, lipid-coated surface, and lipid-coated surfaces featuring a pit-like defect.

 

GROMACS input files

All relevant input files are located in the 'gromacs_input_files' directory: initial configurations, gromacs .mdp parameter files, force field files, and water model files.Folder names 0.5nm, 0.7nm, 1nm, and 2nm refer to the radius of the pit.

 

Python code

Python scripts for setting up and analyzing pressure ramp simulations are available in a separate Zenodo repository:https://zenodo.org/records/14678800
DOI: 10.5281/zenodo.14199665
title: Data and model outputs analyzed in "Coastal hypoxia in the Indian Ocean: unraveling drivers of spatio-temporal variability"

description: This dataset contains the model output files used in the analysis presented in the study "Coastal hypoxia in the Indian Ocean: unraveling drivers of spatio-temporal variability." The data were produced using the MOM6-COBALT-IND12 configuration—a high-resolution coupled physical-biogeochemical model developed for the Northern Indian Ocean.

The dataset includes key model output variables such as dissolved oxygen, integrated primary production in the upper 100 m (intpp), and sea level anomalies (sla), which were used to investigate seasonal, intraseasonal, and interannual variability in coastal hypoxia across the region. It also includes observed oxygen profiles from the World Ocean Database 2018 (WOD18), extracted for the northern Indian Ocean coastal region, to support model evaluation and observational analysis.

Additional outputs from the MOM6-COBALT-IND12 simulation, including full diagnostics and climatologies, are available at DOI: 10.5281/zenodo.14183130.
DOI: 10.5281/zenodo.14199666
title: Data and model outputs analyzed in "Coastal hypoxia in the Indian Ocean: unraveling drivers of spatio-temporal variability"

description: This dataset contains the model output files used in the analysis presented in the study "Coastal hypoxia in the Indian Ocean: unraveling drivers of spatio-temporal variability." The data were produced using the MOM6-COBALT-IND12 configuration—a high-resolution coupled physical-biogeochemical model developed for the Northern Indian Ocean.

The dataset includes key model output variables such as dissolved oxygen, integrated primary production in the upper 100 m (intpp), and sea level anomalies (sla), which were used to investigate seasonal, intraseasonal, and interannual variability in coastal hypoxia across the region. It also includes observed oxygen profiles from the World Ocean Database 2018 (WOD18), extracted for the northern Indian Ocean coastal region, to support model evaluation and observational analysis.

Additional outputs from the MOM6-COBALT-IND12 simulation, including full diagnostics and climatologies, are available at DOI: 10.5281/zenodo.14183130.
DOI: 10.5281/zenodo.15499469
title: IODP Expedition 399 Thin section images

description: Hard rock and sediment thin section images were acquired using either the JRSO-developed Petrographic Image Capture and Archival Tool (PICAT) imager or (rarely) an upright microscope and a digital camera. Sample images are acquired in unpolarized, polarized, and/or cross-polarized light. Image files are presented compressed by hole.
DOI: 10.5281/zenodo.15499470
title: IODP Expedition 399 Thin section images

description: Hard rock and sediment thin section images were acquired using either the JRSO-developed Petrographic Image Capture and Archival Tool (PICAT) imager or (rarely) an upright microscope and a digital camera. Sample images are acquired in unpolarized, polarized, and/or cross-polarized light. Image files are presented compressed by hole.
DOI: 10.5281/zenodo.15499272
title: IODP Expedition 399 Portable X-ray fluorescence (p-XRF)

description: Energy-Dispersive X-Ray Fluorescence (ED-XRF) is a rapid, non-destructive technique for determining qualitative and quantitative changes in chemical composition. Aboard the JOIDES Resolution, pXRF is used for measuring points on section halves, rock pieces, and sometimes powders. Spots are typically irradiated at multiple conditions to excite and measure a wide range of elements. The peak intensity changes (we do not provide concentrations) are then used to help recognize and define major chemo-stratigraphic units without the need for destructive sampling.
DOI: 10.5281/zenodo.15499273
title: IODP Expedition 399 Portable X-ray fluorescence (p-XRF)

description: Energy-Dispersive X-Ray Fluorescence (ED-XRF) is a rapid, non-destructive technique for determining qualitative and quantitative changes in chemical composition. Aboard the JOIDES Resolution, pXRF is used for measuring points on section halves, rock pieces, and sometimes powders. Spots are typically irradiated at multiple conditions to excite and measure a wide range of elements. The peak intensity changes (we do not provide concentrations) are then used to help recognize and define major chemo-stratigraphic units without the need for destructive sampling.
DOI: 10.5281/zenodo.15239845
title: Raw data of epigenetic metabolome
DOI: 10.5281/zenodo.15239844
title: Raw data of epigenetic metabolome
DOI: 10.5281/zenodo.15254375
title: Continuance Usage Intention Towards Telemedicine in Java Island-Indonesia
DOI: 10.5281/zenodo.15254376
title: Continuance Usage Intention Towards Telemedicine in Java Island-Indonesia
DOI: 10.5281/zenodo.17351774
title: translate_udmurt.csv
DOI: 10.5281/zenodo.17351775
title: translate_udmurt.csv
DOI: 10.15468/dl.57sbxd
title: Occurrence Download

description: A dataset containing 109351 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Hesperis matronalis)"
 ]
}

 The dataset includes 109351 records from 793 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019618-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/93n-eq4-qhz
title: Amphistegina lessonii d'Orbigny in Deshayes, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pyl-wam-l7q
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yqt-zb9-v0f
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/31l-eax-v97
title: †Borelis pygmaea Hanzawa, 1930

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m8n-tp7-vb0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5v1-37c-mqx
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mh7-trx-w3z
title: Cristellaria calcar (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8wb-khh-xc6
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/shb-71z-3p6
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wbh-rnl-ty2
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ddq-8ck-93s
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/msl-mpz-4c6
title: Diplopora K.E. Schafhäutl, 1863

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jwk-lph-5t8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k46-7vn-q6n
title: Heterostegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f2c-sz6-0nx
title: †Discocyclina prattii (Michelin, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xb1-eyx-8se
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fah-dwz-1ng
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/78d-lxh-ldr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8d5-rty-2sd
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q7l-bc4-ytz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vg3-4sh-zll
title: Amphistegina lessonii d'Orbigny in Deshayes, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hwg-3bn-zyf
title: †Nummulites fichteli Michelotti, 1841

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p03-jt1-w1k
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1d7-vgp-18d
title: Cancris auricula (Fichtel & Moll, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ken-674-0j3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j0p-cj3-410
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jp8-rze-cet
title: Heterostegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rzc-x7n-wv6
title: Scleractinia Bourne, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/51j-t4n-xrg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nyc-0hl-rz7
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/38z-fy0-pj1
title: †Daviesina ruida (Schwager, 1883)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g6g-vlj-tkx
title: Heterostegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xdz-qxs-k9d
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ak3-qe4-w1w
title: †Spiroclypeus Douvillé, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bfa-1t5-y5e
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/15q-y8a-qv9
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sl1-t4z-g4y
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/803-qpc-7s2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g5j-230-k8f
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bcj-j7k-yws
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cpc-46r-6hd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.15392998
title: astro-claire/arepo-clusters: First catalog release

description: These cataogs contain simulated object properties derived from a suite of AREPO cosmological simulations of small scale structure formation in a cosmological volume. The simulations and star cluster properties are discussed in detail in Williams et al (2025). The dark matter halos in the same box are additionally provided below, corresponding to the dark matter primary, gas and stars secondary structures from that work. 

The available catalogs in each hdf5 file are 'redshift_12', 'redshift_13', 'redshift_14', 'redshift_15', corresponding to the four simulation snapshots analyzed for this work. 

The first set of catalogs, "starcluster_data.hdf5", is the same data as the "stars and gas primary" dataset from Williams et al. (2025). The following properties are available for the star clusters:



stellarMass (Msun): Stellar mass (in solar masses).

gasMass (Msun): Gas mass (in solar masses).

virialized: Virialization status of object: 1 if virialized, 0 if not.

radius_hm (kpc): Half mass radius of object (in kpc).

DMMass_<r (Msun): Mass of DM contained within either virial radius (if virialized) or FOF output radius (if not virialized) (in solar masses).


We additionally provide a the properties of the dark matter halos in the simulation, under "dmhalo_data.hdf5". Please refer to Williams et al (2025) for a detailed discussion of the difference between structures identified as DM halos and as star clusters. The halo catalog contains slightly different properties:



DMMass (Msun): Dark matter mass (in solar masses).

stellarMass (Msun): Stellar mass (in solar masses).

gasMass (Msun): Gas mass (in solar masses).

virialized: Virialization status of object: 1 if virialized, 0 if not.

radius (kpc): Halo radius defined by (in kpc).
DOI: 10.5281/zenodo.16898836
title: astro-claire/arepo-clusters: First catalog release

description: These cataogs contain simulated object properties derived from a suite of AREPO cosmological simulations of small scale structure formation in a cosmological volume. The simulations and star cluster properties are discussed in detail in Williams et al (2025). The dark matter halos in the same box are additionally provided below, corresponding to the dark matter primary, gas and stars secondary structures from that work. 

The available catalogs in each hdf5 file are 'redshift_12', 'redshift_13', 'redshift_14', 'redshift_15', corresponding to the four simulation snapshots analyzed for this work. 

The first set of catalogs, "starcluster_data.hdf5", is the same data as the "stars and gas primary" dataset from Williams et al. (2025). The following properties are available for the star clusters:



stellarMass (Msun): Stellar mass (in solar masses).

gasMass (Msun): Gas mass (in solar masses).

virialized: Virialization status of object: 1 if virialized, 0 if not.

radius_hm (kpc): Half mass radius of object (in kpc).

DMMass_<r (Msun): Mass of DM contained within either virial radius (if virialized) or FOF output radius (if not virialized) (in solar masses).


We additionally provide a the properties of the dark matter halos in the simulation, under "dmhalo_data.hdf5". Please refer to Williams et al (2025) for a detailed discussion of the difference between structures identified as DM halos and as star clusters. The halo catalog contains slightly different properties:



DMMass (Msun): Dark matter mass (in solar masses).

stellarMass (Msun): Stellar mass (in solar masses).

gasMass (Msun): Gas mass (in solar masses).

virialized: Virialization status of object: 1 if virialized, 0 if not.

radius (kpc): Halo radius defined by (in kpc).
DOI: 10.3535/0a7-b1k-l47
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/64x-hpw-tb0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2br-3y0-jrg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/482-ykr-vte
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gpe-dx7-94p
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b0m-kjr-yvz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wa3-2m2-tgt
title: †Loftusia morgani Douvillé, 1904

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4tk-j6s-nvq
title: †Discocyclina prattii (Michelin, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hwa-jt1-c3r
title: Myrica L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sh3-5v0-26g
title: Cycloclypeus W.B. Carpenter, 1856

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v9b-04k-ej1
title: Carpenteria Gray, 1858

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ykn-vyd-rnt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.ihqsqp
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044029-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46wvc3
title: Occurrence Download

description: A dataset containing 8774 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-124.84895 6.99988,-76.3327 6.99988,-76.3327 36.47504,-124.84895 36.47504,-124.84895 6.99988))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepus californicus Gray, 1837"
 ]
}

 The dataset includes 8774 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219798-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfde7p
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028485-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qs67k9
title: Occurrence Download

description: A dataset containing 786 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence, Fossil)",
 "Continent is Asia",
 "TaxonKey is one of (Elephas maximus Linnaeus, 1758, Elephas maximus sumatranus Temminck, 1847, Elephas maximus maximus)"
 ]
}

 The dataset includes 786 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030151-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tdwkkx
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000379-190306134739812/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jt4mgq
title: Occurrence Download

description: A dataset containing 47556 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Conium maculatum L., Cortinarius betulinus J.Favre, Cortinarius bivelus (Fr.) Fr.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 47556 records from 364 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0357025-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.