cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cmvjum
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aponogeton troupinii J.Raynal"
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011400-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fffvma
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Vascular Plants and Bryophytes of Glen Sligachan"
 ]
}

 The dataset includes 94 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009308-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xd6eri
title: Occurrence Download

description: A dataset containing 6917 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atlapetes albinucha (d'Orbigny & Lafresnaye, 1838)"
 ]
}

 The dataset includes 6917 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007700-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7s9ku9
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aponogeton viridis Jum."
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011417-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zgtgz
title: Occurrence Download

description: A dataset containing 6456 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Southern African Bird Atlas Project 2",
 "TaxonKey is Neotis denhami (Children & Vigors, 1826)"
 ]
}

 The dataset includes 6456 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281267-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kn5jyg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phyllonorycter basistrigella (Clemens, 1859)",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0393849-210914110416597/datasets/export for details.
DOI: 10.15468/dl.8jmvxq
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum palaciosii Hágsater & Dodson"
 ]
}

 The dataset includes 34 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159554-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.opotbs
title: Occurrence Download

description: A dataset containing 2762 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catharus mexicanus (Bonaparte, 1856)"
 ]
}

 The dataset includes 2762 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007700-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8fhwm4
title: Occurrence Download

description: A dataset containing 591 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Juniperus pingii var. wilsonii (Rehd.) Silba"
 ]
}

 The dataset includes 591 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011423-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdpb3s
title: Occurrence Download

description: A dataset containing 485 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Squatina guggenheim Marini, 1936"
 ]
}

 The dataset includes 485 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087811-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvnefh
title: Occurrence Download

description: A dataset containing 647 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Cerdocyon thous (Linnaeus, 1766)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 647 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007700-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nu9bxz
title: Occurrence Download

description: A dataset listing the 0 species recorded in GBIF matching the query:
{
 "ScientificName" : [
 "is one of (Paracoccidioides brasiliensis, Paracoccidioides lutzii)"
 ]
}

 The dataset's 0 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0300766-200613084148143/datasets/export for details.
DOI: 10.15468/dl.bkwmdx
title: Occurrence Download

description: A dataset containing 200 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echinocereus scheeri (Salm-Dyck) Scheer"
 ]
}

 The dataset includes 200 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159553-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpxtk5
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ardisia junghuhniana Miq."
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011474-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/bd9w-ak8b
title: Measurement of Cobalt at Råö

description: Measurement of Cobalt at Råö
DOI: 10.6084/m9.figshare.12560909.v1
title: Additional file 2 of Identification of long noncoding RNA RP11-89K21.1 and RP11-357H14.17 as prognostic signature of endometrial carcinoma via integrated bioinformatics analysis

description: Additional file 2. Co-expressed genes correlated with RP11-89K21.1
DOI: 10.6084/m9.figshare.12560924
title: Additional file 5 of Identification of long noncoding RNA RP11-89K21.1 and RP11-357H14.17 as prognostic signature of endometrial carcinoma via integrated bioinformatics analysis

description: Additional file 5. The transcription factors correlated with RP11-89K21.1
DOI: 10.6084/m9.figshare.12560924.v1
title: Additional file 5 of Identification of long noncoding RNA RP11-89K21.1 and RP11-357H14.17 as prognostic signature of endometrial carcinoma via integrated bioinformatics analysis

description: Additional file 5. The transcription factors correlated with RP11-89K21.1
DOI: 10.48597/bfav-87rr
title: Measurement of Aerosol_absorption_coefficient at Summit

description: Measurement of Aerosol_absorption_coefficient at Summit
DOI: 10.48597/bm9s-8j7e
title: Measurement of Cadmium at Reykjavik

description: Measurement of Cadmium at Reykjavik
DOI: 10.48597/bma5-mw4v
title: Measurement of Sodium at Storhofdi

description: Measurement of Sodium at Storhofdi
DOI: 10.48597/bn5q-627k
title: Measurement of Nickel at Råö

description: Measurement of Nickel at Råö
DOI: 10.48597/bzbs-bqbc
title: Measurement of Sodium at Reykjavik

description: Measurement of Sodium at Reykjavik
DOI: 10.48597/c6un-bbcv
title: Measurement of Precipitation_amount at Råö

description: Measurement of Precipitation_amount at Råö
DOI: 10.48597/c8dp-fwhr
title: Measurement of Sodium at Råö

description: Measurement of Sodium at Råö
DOI: 10.48597/csvh-b33a
title: Measurement of Precipitation_amount at Storhofdi

description: Measurement of Precipitation_amount at Storhofdi
DOI: 10.48597/ct9r-g683
title: Measurement of Sulphate_total at Storhofdi

description: Measurement of Sulphate_total at Storhofdi
DOI: 10.48597/de43-udxg
title: Measurement of Cadmium at Råö

description: Measurement of Cadmium at Råö
DOI: 10.48597/dfru-cjpa
title: Measurement of Chloride at Reykjavik

description: Measurement of Chloride at Reykjavik
DOI: 10.48597/dmrx-ke8f
title: Measurement of Aerosol_absorption_coefficient at Zugspitze-Schneefernerhaus

description: Measurement of Aerosol_absorption_coefficient at Zugspitze-Schneefernerhaus
DOI: 10.48597/emd4-qbsz
title: Measurement of Sulphur_dioxide at Eibergen

description: Measurement of Sulphur_dioxide at Eibergen
DOI: 10.48597/euxz-f6p4
title: Measurement of Potassium at Reykjavik

description: Measurement of Potassium at Reykjavik
DOI: 10.48597/f6r2-r8me
title: Measurement of Ammonium at Storhofdi

description: Measurement of Ammonium at Storhofdi
DOI: 10.48597/fqzw-y54c
title: Measurement of Nitrate at Storhofdi

description: Measurement of Nitrate at Storhofdi
DOI: 10.48597/frdj-sxnj
title: Measurement of Magnesium at Råö

description: Measurement of Magnesium at Råö
DOI: 10.21994/loar48873
title: thesaintthomasheralddvi Batch 400027132683

description: thesaintthomasheralddvi. Batch 400027132683. Roundtrip 1. 1882-01-01/1883-12-29. Pages: 849.
DOI: 10.48597/fv2g-n7q4
title: Measurement of Inorganics in precipitation at Kevo

description: Measurement of Inorganics in precipitation at Kevo
DOI: 10.48597/gd3v-pdpf
title: Measurement of Lead at Råö

description: Measurement of Lead at Råö
DOI: 10.48597/gnp8-7db3
title: Measurement of Sulphate_total at Råö

description: Measurement of Sulphate_total at Råö
DOI: 10.48597/gpju-ysub
title: Measurement of Magnesium at Johnstown Castle

description: Measurement of Magnesium at Johnstown Castle
DOI: 10.48597/hfmn-chnk
title: Measurement of Lead at Storhofdi

description: Measurement of Lead at Storhofdi
DOI: 10.48597/hpcd-ygjn
title: Measurement of Calcium at Storhofdi

description: Measurement of Calcium at Storhofdi
DOI: 10.48597/jh69-yqe6
title: Measurement of Conductivity at Johnstown Castle

description: Measurement of Conductivity at Johnstown Castle
DOI: 10.48597/jypm-7pkd
title: Measurement of Sum_ammonia_and_ammonium at Valentia Observatory

description: Measurement of Sum_ammonia_and_ammonium at Valentia Observatory
DOI: 10.48597/kbmp-zexz
title: Measurement of Potassium at Storhofdi

description: Measurement of Potassium at Storhofdi
DOI: 10.48597/kda4-35hw
title: Measurement of Aerosol light scattering at Summit

description: Measurement of Aerosol light scattering at Summit
DOI: 10.48597/ke3j-tazu
title: Measurement of Zinc at Råö

description: Measurement of Zinc at Råö
DOI: 10.48597/khvy-umbh
title: Measurement of Calcium at Reykjavik

description: Measurement of Calcium at Reykjavik
DOI: 10.48597/kwsj-wfwg
title: Measurement of Susp_part_matter at Råö

description: Measurement of Susp_part_matter at Råö
DOI: 10.48597/mgtb-bx7s
title: Measurement of Vanadium at Råö

description: Measurement of Vanadium at Råö
DOI: 10.48597/mqxw-6rds
title: Measurement of Sodium at Råö

description: Measurement of Sodium at Råö
DOI: 10.48597/msm9-qa3k
title: Measurement of Arsenic at Råö

description: Measurement of Arsenic at Råö
DOI: 10.48597/mxvb-a28g
title: Measurement of Conductivity at Storhofdi

description: Measurement of Conductivity at Storhofdi
DOI: 10.48597/ngfa-sc73
title: Measurement of Calcium at Råö

description: Measurement of Calcium at Råö
DOI: 10.48597/nh9s-67rv
title: Measurement of Aerosol_absorption_coefficient at Leipzig

description: Measurement of Aerosol_absorption_coefficient at Leipzig
DOI: 10.6084/m9.figshare.7842890
title: Additional file 3: of Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava

description: Table S2. Prediction of lncRNAs acting as miRNA target mimics. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.7842881
title: Additional file 2: of Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava

description: Table S1. Summary of 27 lncRNA-mRNA pairs in cis-acting regulatory relationship. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.7842899.v1
title: Additional file 4: of Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava

description: Table S3. Primers of lncRNAs and genes used for qRT-PCR and the expression correlation between ssRNA-seq and qRT-PCR. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7842890.v1
title: Additional file 3: of Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava

description: Table S2. Prediction of lncRNAs acting as miRNA target mimics. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.12037209.v1
title: Integrated analysis of miRNA and mRNA expression profiles in p53-edited PFF cells

description: p53 is the most frequently mutated gene in human cancers, with over half of all tumors harboring mutation at this locus. R248 and R249 (corresponding to porcine R241 and R242), are among the hotspot mutations frequently mutated in liver, lung, breast, and some other cancers. In this study, p53 gene was knocked out or point-edited (R241 and R242 were converted to 241W and 242S) in porcine fetal fibroblast (PFF) cells via CRISPR-Cas9 technique. High throughput sequencing of miRNA and mRNA uncovered a total of 225 differentially expressed miRNAs (DEMs) and 738 differentially expressed genes (DEGs) in the p53 knockout (p53-KO) cells, and a total of 211 DEMs and 722 DEGs in the point-modified (p53-241W242S) cells. Totally 28 annotated DEMs were found to overlap between p53-KO/p53-WT and p53-241W242S/p53-WT miRNAs datasets, of which miR-34 c, miR-218, miR-205, miR-105-1, miR-105-2, miR-206, miR-224 and miR-429 play important roles in p53 regulatory network. Among the top 10 DEGs in p53-KO and p53-241W242S cells, most genes were reported to be involved in tumors, cell proliferation or cell migration. p53-KO and p53-241W242S cells showed a significantly higher (P &lt; 0.01) proliferation rate compared with p53-WT cells. In conclusion, genetic modifications of p53 gene significantly affect the expression levels of a large number of genes and miRNAs in the PFF cells. The p53-edited PFF cells could be used as non-tumor cell models for investigating the p53 signaling network, and as donor cells for somatic nuclear transfer, with the aim to develop porcine models with the corresponding p53 mutations. <b>Abbreviations:</b> CRISPR-Cas9: Clustered regularly interspaced short palindromic repeats-associated protein 9; PFF: porcine fetal fibroblasts; SCNT: somatic cell nuclear transfer; RNA sequencing: small RNA sequencing and mRNA sequencing; DEGs: differentially expressed mRNAs; DEMs: differentially expressed miRNAs.
DOI: 10.6084/m9.figshare.7842908
title: Additional file 5: of Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava

description: Table S4. Summary of genes involved in mRNA-lncRNA-miRNA network presented in Fig. 7a. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7842908.v1
title: Additional file 5: of Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava

description: Table S4. Summary of genes involved in mRNA-lncRNA-miRNA network presented in Fig. 7a. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7842899
title: Additional file 4: of Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava

description: Table S3. Primers of lncRNAs and genes used for qRT-PCR and the expression correlation between ssRNA-seq and qRT-PCR. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.25325899
title: Appendices

description: Appendices: lab information and interviews transcriptions.
DOI: 10.6084/m9.figshare.25325899.v1
title: Appendices

description: Appendices: lab information and interviews transcriptions.
DOI: 10.6084/m9.figshare.12037209
title: Integrated analysis of miRNA and mRNA expression profiles in p53-edited PFF cells

description: p53 is the most frequently mutated gene in human cancers, with over half of all tumors harboring mutation at this locus. R248 and R249 (corresponding to porcine R241 and R242), are among the hotspot mutations frequently mutated in liver, lung, breast, and some other cancers. In this study, p53 gene was knocked out or point-edited (R241 and R242 were converted to 241W and 242S) in porcine fetal fibroblast (PFF) cells via CRISPR-Cas9 technique. High throughput sequencing of miRNA and mRNA uncovered a total of 225 differentially expressed miRNAs (DEMs) and 738 differentially expressed genes (DEGs) in the p53 knockout (p53-KO) cells, and a total of 211 DEMs and 722 DEGs in the point-modified (p53-241W242S) cells. Totally 28 annotated DEMs were found to overlap between p53-KO/p53-WT and p53-241W242S/p53-WT miRNAs datasets, of which miR-34 c, miR-218, miR-205, miR-105-1, miR-105-2, miR-206, miR-224 and miR-429 play important roles in p53 regulatory network. Among the top 10 DEGs in p53-KO and p53-241W242S cells, most genes were reported to be involved in tumors, cell proliferation or cell migration. p53-KO and p53-241W242S cells showed a significantly higher (P &lt; 0.01) proliferation rate compared with p53-WT cells. In conclusion, genetic modifications of p53 gene significantly affect the expression levels of a large number of genes and miRNAs in the PFF cells. The p53-edited PFF cells could be used as non-tumor cell models for investigating the p53 signaling network, and as donor cells for somatic nuclear transfer, with the aim to develop porcine models with the corresponding p53 mutations. <b>Abbreviations:</b> CRISPR-Cas9: Clustered regularly interspaced short palindromic repeats-associated protein 9; PFF: porcine fetal fibroblasts; SCNT: somatic cell nuclear transfer; RNA sequencing: small RNA sequencing and mRNA sequencing; DEGs: differentially expressed mRNAs; DEMs: differentially expressed miRNAs.
DOI: 10.6084/m9.figshare.7842926
title: Additional file 7: of Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava

description: Table S5. Summary of genes involved in mRNA-lncRNA network presented in Fig. 7b. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7842926.v1
title: Additional file 7: of Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava

description: Table S5. Summary of genes involved in mRNA-lncRNA network presented in Fig. 7b. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7842929
title: Additional file 1: of Proteomics of the corpus callosum to identify novel factors involved in hypomyelinated Niemann-Pick Type C disease mice

description: The validated proteins/protein groups that identified in all samples and their UniProt accessions, protein and gene names, Log2 LFQ intensities and the number of peptides from each sample. (XLSX 539 kb)
DOI: 10.6084/m9.figshare.7842929.v1
title: Additional file 1: of Proteomics of the corpus callosum to identify novel factors involved in hypomyelinated Niemann-Pick Type C disease mice

description: The validated proteins/protein groups that identified in all samples and their UniProt accessions, protein and gene names, Log2 LFQ intensities and the number of peptides from each sample. (XLSX 539 kb)
DOI: 10.6084/m9.figshare.7842932
title: MOESM1 of TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data

description: Additional file 1. Source code for TCC-GUI. This file can be used to launch TCC-GUI locally. The primary aim is to provide reproducible results described in the manuscript.
DOI: 10.6084/m9.figshare.7842932.v1
title: MOESM1 of TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data

description: Additional file 1. Source code for TCC-GUI. This file can be used to launch TCC-GUI locally. The primary aim is to provide reproducible results described in the manuscript.
DOI: 10.6084/m9.figshare.25325953
title: Map file

description: Physical map file for 152,671 SNPs
DOI: 10.6084/m9.figshare.25325953.v1
title: Map file

description: Physical map file for 152,671 SNPs
DOI: 10.6084/m9.figshare.16755839
title: Additional file 2 of Genome-wide dynamic network analysis reveals the potential genes for MeJA-induced growth-to-defense transition

description: Additional file 2 : Supplementary Table S1. List of DNB genes and their functional descriptions.
DOI: 10.6084/m9.figshare.16755839.v1
title: Additional file 2 of Genome-wide dynamic network analysis reveals the potential genes for MeJA-induced growth-to-defense transition

description: Additional file 2 : Supplementary Table S1. List of DNB genes and their functional descriptions.
DOI: 10.6084/m9.figshare.16755842
title: Additional file 3 of Genome-wide dynamic network analysis reveals the potential genes for MeJA-induced growth-to-defense transition

description: Additional file 3 : Supplementary Table S2. Functional enrichment for DNB genes.
DOI: 10.6084/m9.figshare.16755842.v1
title: Additional file 3 of Genome-wide dynamic network analysis reveals the potential genes for MeJA-induced growth-to-defense transition

description: Additional file 3 : Supplementary Table S2. Functional enrichment for DNB genes.
DOI: 10.6084/m9.figshare.16755845
title: Additional file 4 of Genome-wide dynamic network analysis reveals the potential genes for MeJA-induced growth-to-defense transition

description: Additional file 4 : Supplementary Table S3. List of DNB genes assigned KEGG pathways.
DOI: 10.6084/m9.figshare.16755845.v1
title: Additional file 4 of Genome-wide dynamic network analysis reveals the potential genes for MeJA-induced growth-to-defense transition

description: Additional file 4 : Supplementary Table S3. List of DNB genes assigned KEGG pathways.
DOI: 10.6084/m9.figshare.16755848
title: Additional file 5 of Genome-wide dynamic network analysis reveals the potential genes for MeJA-induced growth-to-defense transition

description: Additional file 5 : Supplementary Table S4. List of differentially expressed genes between the defense tipping point and previous time point.
DOI: 10.6084/m9.figshare.16755848.v1
title: Additional file 5 of Genome-wide dynamic network analysis reveals the potential genes for MeJA-induced growth-to-defense transition

description: Additional file 5 : Supplementary Table S4. List of differentially expressed genes between the defense tipping point and previous time point.
DOI: 10.6084/m9.figshare.16755851
title: Additional file 6 of Genome-wide dynamic network analysis reveals the potential genes for MeJA-induced growth-to-defense transition

description: Additional file 6 : Supplementary Table S5. The network of DNB genes and DEGs.
DOI: 10.6084/m9.figshare.16755851.v1
title: Additional file 6 of Genome-wide dynamic network analysis reveals the potential genes for MeJA-induced growth-to-defense transition

description: Additional file 6 : Supplementary Table S5. The network of DNB genes and DEGs.