cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19335920
title: Additional file 6 of Diurnal and circadian rhythmicity of the human blood transcriptome overlaps with organ- and tissue-specific expression of a non-human primate

description: Additional file 6: Table S6. Prediction performance of phase of rhythmicity. Performance of phase of rhythmicity prediction in the paraventricular nucleus (PVN) and the antrum of the stomach (ANT) based on a selected set of transcripts (number of predictor genes) from one (1-sample based) or two (2-sample based) blood samples using a Partial Least Squares Regression (PLSR) model. Performance is evaluated using R2, median absolute error, error mean and standard deviation (sd), and proportion of samples with error within 1, 2 or 3 hours. The PLSR models were trained using a training set from the sleeping in-phase dataset and performance was evaluated using validation sets from the sleeping in-phase or sleeping out-of-phase datasets.
DOI: 10.6084/m9.figshare.19335920.v1
title: Additional file 6 of Diurnal and circadian rhythmicity of the human blood transcriptome overlaps with organ- and tissue-specific expression of a non-human primate

description: Additional file 6: Table S6. Prediction performance of phase of rhythmicity. Performance of phase of rhythmicity prediction in the paraventricular nucleus (PVN) and the antrum of the stomach (ANT) based on a selected set of transcripts (number of predictor genes) from one (1-sample based) or two (2-sample based) blood samples using a Partial Least Squares Regression (PLSR) model. Performance is evaluated using R2, median absolute error, error mean and standard deviation (sd), and proportion of samples with error within 1, 2 or 3 hours. The PLSR models were trained using a training set from the sleeping in-phase dataset and performance was evaluated using validation sets from the sleeping in-phase or sleeping out-of-phase datasets.
DOI: 10.6084/m9.figshare.19335923
title: Additional file 7 of Diurnal and circadian rhythmicity of the human blood transcriptome overlaps with organ- and tissue-specific expression of a non-human primate

description: Additional file 7: Table S7. Over and under representation of blood immune cells. Over and under representation of blood immune cells, as indicated by immune cell markers defined in [57], within the day or night cluster (see main text), of overlapping rhythmic genes identified in a given tissue/organ was assessed using a two-sided Fisher exact test. Here, overlapping genes within a given cluster, within a tissue/organ, were directly compared with each set of orthologous immune cell markers. The table contains the observed vs expected values, and associated p values, for each cluster, tissue and immune cell type combination.
DOI: 10.6084/m9.figshare.19335923.v1
title: Additional file 7 of Diurnal and circadian rhythmicity of the human blood transcriptome overlaps with organ- and tissue-specific expression of a non-human primate

description: Additional file 7: Table S7. Over and under representation of blood immune cells. Over and under representation of blood immune cells, as indicated by immune cell markers defined in [57], within the day or night cluster (see main text), of overlapping rhythmic genes identified in a given tissue/organ was assessed using a two-sided Fisher exact test. Here, overlapping genes within a given cluster, within a tissue/organ, were directly compared with each set of orthologous immune cell markers. The table contains the observed vs expected values, and associated p values, for each cluster, tissue and immune cell type combination.
DOI: 10.6084/m9.figshare.19726772
title: Additional file 1 of Auditory steady state responses elicited by silent gaps embedded within a broadband noise

description: Additional file 1. Samples of test sound stimuli. The file contains examples of GAP sound stimuli used in the present study (sampling rate: 48,000 Hz). GAP_0 is a white noise. GAP_3.125, GAP_6.25, and GAP_12.5 contain silent gaps with durations of 3.125, 6.25, and 12.5 ms at a rate of 40 Hz, respectively. Sound waveforms are displayed in Fig. 1.
DOI: 10.6084/m9.figshare.19726772.v1
title: Additional file 1 of Auditory steady state responses elicited by silent gaps embedded within a broadband noise

description: Additional file 1. Samples of test sound stimuli. The file contains examples of GAP sound stimuli used in the present study (sampling rate: 48,000 Hz). GAP_0 is a white noise. GAP_3.125, GAP_6.25, and GAP_12.5 contain silent gaps with durations of 3.125, 6.25, and 12.5 ms at a rate of 40 Hz, respectively. Sound waveforms are displayed in Fig. 1.
DOI: 10.34740/kaggle/dsv/3583168
title: Cyclistic Bike Share Data Jan-Dec 2021
DOI: 10.5281/zenodo.6526009
title: Data of Symbolic Quantitative Verification of Quantized Neural Networks

description: Experimental Results for the Symbolic Quantitative Verification of Quantized Neural Networks Paper
DOI: 10.5281/zenodo.6526008
title: Data of Symbolic Quantitative Verification of Quantized Neural Networks

description: Experimental Results for the Symbolic Quantitative Verification of Quantized Neural Networks Paper
DOI: 10.5281/zenodo.6526038
title: An Algebraic Architecture Model to Select PUSH/PULL Data Transfer

description: The supplementary material for ASE 2022 Submission #21. <strong>Detailed Proofs</strong> The detailed proofs of Theorems 1, 2, 3 and other lemmas are contained in the following .PDF file. File Name Description ASE2022_proofs.pdf The detailed proofs of the correstness <strong>Graph-based Refactoring Tool</strong> The following .jar file is the current implementation of the graph-based tool for push/pull refactoring. File Name Description GraphBasedRefactor.jar graph-based refactoring tool It can work with Java 13 or later. The tool can be used in the following steps: Launch the tool from the command prompt.<br> <code>java -jar GraphBasedRefactor.jar</code> Open a model file. (File -&gt; Open) Select one data transfer method for each edge. (A pop-up menu is displayed by double clicking each edge.) Generate a plain Java prototype or JAX-RS prototype. (Generate -&gt; Generate Plain Java Prototype, or Generate -&gt; Generate JAX-RS Prototype) <strong>Model Files</strong> As case studies, we designed the architectures of the WOS (Weather Observation System), POS (Point Of Sales) system, twitter-like web service and jumping game. Their model files are compressed in the following .zip file. File Name Description models.zip Compressed model files <strong>Generated Prototypes</strong> We generated the prototypes from the above model files. The source files are compressed in the following .zip files. File Name Description prototypes.zip Compressed prototypes <strong>Performance Evaluations</strong> We measured the computation time of each API call on the JAX-RS prototypes of WOS, JAX-RS prototypes of twitter-like web service, and Java prototypes and the completed implementations of POS. The results are summarized in the following Excel file. File Name Description evaluations.xlsx Performance evaluations of API calls <strong>Completed Implementations</strong> We had completed the implementaions of the jumping game and POS system in Java. The source files and the executable .jar files are compressed in the following .zip files. File Name Description JumpingGame.zip A completed push-first implementation and the executable .jar file of the jumping game in Java PosSystem.zip A completed push-first implementation and the executable .jar file of the POS system in Java The .jar files can work with Java 13 or later. They can be launched by typing the following commands on the command prompt. <code>java -jar JumpingGame.jar</code> <code>java -jar PosSystem.jar</code>
DOI: 10.5281/zenodo.6500002
title: An Algebraic Architecture Model to Select PUSH/PULL Data Transfer

description: The supplementary material for ASE 2022 Submission #21. <strong>Detailed Proofs</strong> The detailed proofs of Theorems 1, 2, 3 and other lemmas are contained in the following .PDF file. File Name Description ASE2022_proofs.pdf The detailed proofs of the correstness <strong>Graph-based Refactoring Tool</strong> The following .jar file is the current implementation of the graph-based tool for push/pull refactoring. File Name Description GraphBasedRefactor.jar graph-based refactoring tool It can work with Java 13 or later. The tool can be used in the following steps: Launch the tool from the command prompt.<br> <code>java -jar GraphBasedRefactor.jar</code> Open a model file. (File -&gt; Open) Select one data transfer method for each edge. (A pop-up menu is displayed by double clicking each edge.) Generate a plain Java prototype or JAX-RS prototype. (Generate -&gt; Generate Plain Java Prototype, or Generate -&gt; Generate JAX-RS Prototype) <strong>Model Files</strong> As case studies, we designed the architectures of the WOS (Weather Observation System), POS (Point Of Sales) system, twitter-like web service and jumping game. Their model files are compressed in the following .zip file. File Name Description models.zip Compressed model files <strong>Generated Prototypes</strong> We generated the prototypes from the above model files. The source files are compressed in the following .zip files. File Name Description prototypes.zip Compressed prototypes <strong>Performance Evaluations</strong> We measured the computation time of each API call on the JAX-RS prototypes of WOS, JAX-RS prototypes of twitter-like web service, and Java prototypes and the completed implementations of POS. The results are summarized in the following Excel file. File Name Description evaluations.xlsx Performance evaluations of API calls <strong>Completed Implementations</strong> We had completed the implementaions of the jumping game and POS system in Java. The source files and the executable .jar files are compressed in the following .zip files. File Name Description JumpingGame.zip A completed push-first implementation and the executable .jar file of the jumping game in Java PosSystem.zip A completed push-first implementation and the executable .jar file of the POS system in Java The .jar files can work with Java 13 or later. They can be launched by typing the following commands on the command prompt. <code>java -jar JumpingGame.jar</code> <code>java -jar PosSystem.jar</code>
DOI: 10.5517/ccdc.csd.cc27dkdm
title: CCDC 2067650: Experimental Crystal Structure Determination

description: Related Article: Ali Khademi, Ahmad Amiri, Farzaneh Fadaei Tirani, Kurt Schenk-Joß|2022|Int.J.Hydro.Eneg|47|16921|doi:10.1016/j.ijhydene.2022.03.195
DOI: 10.5517/ccdc.csd.cc2b8c77
title: CCDC 2152988: Experimental Crystal Structure Determination

description: Related Article: Carley Giffert L. Nongpiur, Danny F. Diengdoh, Nupur Nagar, Krishna Mohan Poluri, Paige M. Gannon, Werner Kaminsky, Mohan Rao Kollipara|2022|Polyhedron|221|115855|doi:10.1016/j.poly.2022.115855
DOI: 10.5517/ccdc.csd.cc2b8c88
title: CCDC 2152989: Experimental Crystal Structure Determination

description: Related Article: Carley Giffert L. Nongpiur, Danny F. Diengdoh, Nupur Nagar, Krishna Mohan Poluri, Paige M. Gannon, Werner Kaminsky, Mohan Rao Kollipara|2022|Polyhedron|221|115855|doi:10.1016/j.poly.2022.115855
DOI: 10.5517/ccdc.csd.cc2b8c99
title: CCDC 2152990: Experimental Crystal Structure Determination

description: Related Article: Carley Giffert L. Nongpiur, Danny F. Diengdoh, Nupur Nagar, Krishna Mohan Poluri, Paige M. Gannon, Werner Kaminsky, Mohan Rao Kollipara|2022|Polyhedron|221|115855|doi:10.1016/j.poly.2022.115855
DOI: 10.5517/ccdc.csd.cc2b8cbb
title: CCDC 2152991: Experimental Crystal Structure Determination

description: Related Article: Carley Giffert L. Nongpiur, Danny F. Diengdoh, Nupur Nagar, Krishna Mohan Poluri, Paige M. Gannon, Werner Kaminsky, Mohan Rao Kollipara|2022|Polyhedron|221|115855|doi:10.1016/j.poly.2022.115855
DOI: 10.5517/ccdc.csd.cc2b8ccc
title: CCDC 2152992: Experimental Crystal Structure Determination

description: Related Article: Carley Giffert L. Nongpiur, Danny F. Diengdoh, Nupur Nagar, Krishna Mohan Poluri, Paige M. Gannon, Werner Kaminsky, Mohan Rao Kollipara|2022|Polyhedron|221|115855|doi:10.1016/j.poly.2022.115855
DOI: 10.5517/ccdc.csd.cc2b8cdd
title: CCDC 2152993: Experimental Crystal Structure Determination

description: Related Article: Carley Giffert L. Nongpiur, Danny F. Diengdoh, Nupur Nagar, Krishna Mohan Poluri, Paige M. Gannon, Werner Kaminsky, Mohan Rao Kollipara|2022|Polyhedron|221|115855|doi:10.1016/j.poly.2022.115855
DOI: 10.5517/ccdc.csd.cc2b8cff
title: CCDC 2152994: Experimental Crystal Structure Determination

description: Related Article: Carley Giffert L. Nongpiur, Danny F. Diengdoh, Nupur Nagar, Krishna Mohan Poluri, Paige M. Gannon, Werner Kaminsky, Mohan Rao Kollipara|2022|Polyhedron|221|115855|doi:10.1016/j.poly.2022.115855
DOI: 10.5517/ccdc.csd.cc2b9clm
title: CCDC 2153960: Experimental Crystal Structure Determination

description: Related Article: Jia-Meng Jiang, Dan Xia, Xin-Liu Zhu, Dan Zhu, Xue-Wen Yang, Ke Pan|2022|Tetrahedron|114|132782|doi:10.1016/j.tet.2022.132782
DOI: 10.5517/ccdc.csd.cc2b9cmn
title: CCDC 2153961: Experimental Crystal Structure Determination

description: Related Article: Jia-Meng Jiang, Dan Xia, Xin-Liu Zhu, Dan Zhu, Xue-Wen Yang, Ke Pan|2022|Tetrahedron|114|132782|doi:10.1016/j.tet.2022.132782
DOI: 10.5517/ccdc.csd.cc2bck1b
title: CCDC 2156051: Experimental Crystal Structure Determination

description: Related Article: Jiahua Chen, Jun Wei Lim, Shunsuke Chiba|2022|Tetrahedron|114|132779|doi:10.1016/j.tet.2022.132779
DOI: 10.5281/zenodo.6526078
title: the dataset of DeepRetention

description: the dataset of DeepRetention
DOI: 10.5281/zenodo.6526077
title: the dataset of DeepRetention

description: the dataset of DeepRetention
DOI: 10.6084/m9.figshare.19093373
title: The sedimentary record analysis of the Sanshui Basin: Implication for the Late Cretaceous tectonic evolution in the northern margin of South China Sea

description: clay mineral content, major and trace elements, and the detrital zircon ages reults of the Late Cretaceous sandstone from the Sanshui Basin
DOI: 10.6084/m9.figshare.19093373.v6
title: The sedimentary record analysis of the Sanshui Basin: Implication for the Late Cretaceous tectonic evolution in the northern margin of South China Sea

description: clay mineral content, major and trace elements, and the detrital zircon ages reults of the Late Cretaceous sandstone from the Sanshui Basin
DOI: 10.6084/m9.figshare.19726843
title: Reithrodontomys chrysopsis database

description: Dataset with ocurrence records of Reithrodontomys chrysopsis
DOI: 10.6084/m9.figshare.19726843.v1
title: Reithrodontomys chrysopsis database

description: Dataset with ocurrence records of Reithrodontomys chrysopsis
DOI: 10.5281/zenodo.6518674
title: Life-history genotype explains variation in migration activity in Atlantic salmon (Salmo salar)

description: Data and R-script used in the paper titled in the title.
DOI: 10.5281/zenodo.6518673
title: Life-history genotype explains variation in migration activity in Atlantic salmon (Salmo salar)

description: Data and R-script used in the paper titled in the title.
DOI: 10.15151/esrf-es-686601635
title: Paris Rive-Gauche BAG: from structure to drug design

description: Our BAG was created in 2006 to federate well-established structural biology laboratories from south Paris. At present, several projects are investigated by different teams from 5 Institutes: (1) I2BC (Institut de Biologie Intégrative de la Cellule), (2) IBPC (Institut de Biologie Physico-Chimique), (3) INSERM (Institut National de la Santé et de la Recherche Médicale), (4) LBPA (Laboratoire de Biologie et Pharmacologie Appliquée) and (5) CiTCoM (Cibles Thérapeutiques et Conception de Médicaments, ex-name LCRB). Our research area focuses on many important biological systems involved in human pathology or infectious diseases, including molecular chaperones, DNA recombination, RNA maturation, ribosome biogenesis, telomerase assembly, bacterial toxins, malaria disease, neurodegenerative disease, drugs resistance and cell-signalling.
DOI: 10.15151/esrf-es-701731563
title: IBS BAG

description: The IBS BAG includes in this proposal IBS teams and external groups from iRTSV/CEA (Grenoble), CEA-Cadarache (St Paul lez Durance) and IRBA (Brétigny-sur-Orge). We study structure-function relationships of proteins emphasizing in human health, biotechnology and methodology. Most of the projects are a continuation of the MX-2329 proposal and can be grouped in different topics as follows: host-pathogen interaction, new drug targets, fundamental cellular mechanisms, membrane proteins, intrinsically disordered proteins, biotechnological applications and methodology. Some of these projects use integrative approaches (X-ray crystallography, SAXS, NMR (and cryo-EM), together with other biophysical studies) with the aim to fully understand the complexity of the biological macromolecular systems on study. Some teams are dedicated to serial crystallography and its developments, for which the ESRF-EBS has become the perfect tool.
DOI: 10.15151/esrf-es-708759719
title: Danish Biochemistry and Structural biology BAG

description: This BAG application gathers many danish esrf users with the area of structural biochemistry (including both crystallography, cryoEM and SAXS). Some of the work focuses on carbohydrate active enzymes of all classes, with particular focus on biotechnological applications. Several PIs work in the important membrane proteins area, with both receptors and transporters as main focus, almost all potential or current drug targets. Other groups work on non membrane proteins which are also potential drug targets or in some way known to potentially be involved in disease - enzymes, bacterial antibiotic resistance and survival, DNA binding proteins and other regulators, immune system components. One crystallographic method development project is also included as are two principally bioSAXS projects. BioSAXS in addition contributes to several of the other projects, and infact we ask in this round for less Xtal beamtime and more bioSAXS beamtime.
DOI: 10.15151/esrf-es-806900037
title: spin waves in Nickel metal

description: We will measure the spin waves in Nickel metal using RIXS.
DOI: 10.15151/esrf-es-753378670
title: In situ 3D Coherent X-ray Diffraction Imaging of Pt Nanocrystals during electrochemical cycling

description: In this proposal, we intend to follow and study the structural changes in three dimensions (3D) of multiple Pt nanoparticles (NPs) under realistic electrochemical reactions, such as oxygen reduction reaction (ORR) and hydrogen evolution reaction (HER). More precisely, we aim to map the strain response of multiple single NPs as a function of the electrode potential by probing the particles at different Bragg peaks to get the full 3D strain tensor. The Pt NPs will be immersed in H2SO4 and the electrode potential will be applied to trigger different reactions (e.g ORR, HER). This experiment will complement previous studies carried out at ID01 beamline.
DOI: 10.15151/esrf-es-761061310
title: Compressibility and structural response to pressure study of several rare-earth pyrochlore iridates A2Ir2O7 (A = Nd, Sm, Er)

description: The rare-earth iridates, with general formula A2Ir2O7 (A = rare-earth ion), crystallise in a pyrochlore structure. They display a wide range of exotic magnetic and electronic low temperature properties, dependent on the specific rare-earth ion, due to the inherent magnetic geometric frustration of the rare-earth and Ir4+ (J = ½) corner-sharing tetrahedral lattices. Surprisingly however, initial magnetic ordering of the Ir4+ sublattice appears to be primarily dependent on the A ion size (and hence the interatomic distances/compound’s lattice parameter), rather than the rare-earth’s specific electronic properties. To investigate this relationship, we propose to measure the lattice compressibility and the structural evolution with pressure of several A2Ir2O7 members, to allow proper interpretation of property measurements under pressure. We request beam time to use synchrotron powder X-ray diffraction, in a DAC.
DOI: 10.6084/m9.figshare.19726918
title: Nanopore Sequencing Expands Individualized Structural Variations and Dynamic Methylomes in Gut Metagenome

description: MSMS indentification data
DOI: 10.6084/m9.figshare.19726918.v2
title: Nanopore Sequencing Expands Individualized Structural Variations and Dynamic Methylomes in Gut Metagenome

description: MSMS indentification data
DOI: 10.6084/m9.figshare.19726918.v1
title: Nanopore Sequencing Expands Individualized Structural Variations and Dynamic Methylomes in Gut Metagenome

description: MSMS indentification data
DOI: 10.6084/m9.figshare.19726942
title: Questionnaire Prospects for Using Charity Lotteries

description: Questionnaire responses for the study on; Prospects for using charity lotteries in social marketing
DOI: 10.5281/zenodo.6526091
title: ASE_2022_A Tale of Two Cities: an Empirical Study on Deep Learning OSS Communities

description: The dataset of paper---ASE_2022_A Tale of Two Cities: an Empirical Study on Deep Learning OSS Communities. It includes 14,053 and 21,765 contributors, as well as 23,739 and 33,454 issues from the PyTorch and TensorFlow communities.
DOI: 10.5281/zenodo.6526090
title: ASE_2022_A Tale of Two Cities: an Empirical Study on Deep Learning OSS Communities

description: The dataset of paper---ASE_2022_A Tale of Two Cities: an Empirical Study on Deep Learning OSS Communities. It includes 14,053 and 21,765 contributors, as well as 23,739 and 33,454 issues from the PyTorch and TensorFlow communities.
DOI: 10.25919/d02p-4v38
title: Parkes observations for project P1154 semester 2022APRS_04

description: Pulsars with high surface magnetic field-strengths (high-B pulsars) provide a rich seam of study for both observers and theorists alike. Studies of their population properties have the potential to answer several fundamental questions about the nature of these objects and how they fit in with the overall pulsar population. These questions include: How do their magnetic fields arise? How is pulsed radio emission produced above the quantum critical field? How do the various populations of high-B pulsars evolve with time? In this proposal we will use the Ultra-Wideband Low (UWL) receiver system on Parkes to complete a Southern-Sky radio census of these high-B pulsars in order to determine their geometric and emission properties with the aim of providing the answers to the questions posed above.
DOI: 10.5281/zenodo.6526296
title: ASE_2022_A Tale of Two Cities: an Empirical Study on Deep Learning OSS Communities

description: The dataset of paper---ASE_2022_A Tale of Two Cities: an Empirical Study on Deep Learning OSS Communities. It includes 23,739 and 33,454 issues from the PyTorch and TensorFlow communities.
DOI: 10.5281/zenodo.6526295
title: ASE_2022_A Tale of Two Cities: an Empirical Study on Deep Learning OSS Communities

description: The dataset of paper---ASE_2022_A Tale of Two Cities: an Empirical Study on Deep Learning OSS Communities. It includes 23,739 and 33,454 issues from the PyTorch and TensorFlow communities.
DOI: 10.5281/zenodo.6526016
title: Models and simulation results of "A relatively dry mantle transition zone revealed by geomagnetic diurnal variations"

description: Models and simulation results used in Zhang et al. 2022: A relatively dry mantle transition zone revealed by geomagnetic diurnal variations, include files for: 1. 3D Conductivity models (ascii) and corresponding perturbed magnetic field on the surface (Matalab Mat format): Global*Model, Secondary*Hs_1cpd.mat 2. inhomogeneous surface conductance layer for thin-sheet modeling (Matlab Mat format): SurfaceCond1degx1deg.mat 3. 1D inversion profiles to generate Figure 1 (Matalab Mat format) depth.mat, MultiMode*.mat
DOI: 10.3886/e122001v1-117500
title: Data and Code for: The Long-Run Effects of Recessions on Education and Income

description: This project contains data and code for "The Long-Run Effects of Recessions on Education and Income."