cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1046048012
title: In sit XAS-XES study of CO oxidation reaction over CaTi1-xFexO3-δ perovskite catalyst in presence of water vapor.

description: This proposal aims to study the effect on water vapor during the CO oxidation reaction over Pt particles dispersed on CaTi1-xFexO3-δ support, with x=0, 0.2, 0.3, 0.4. This novel support material shows catalytic activities similar to ceria, converting CO already at room temperature. Interestingly we observe, that the CO conversion is favoured in presence of water vapor in the gas feed (CO+O2+H2O, “wet conditions”). We believe that this significant enhance in catalytic performance, is due to the formations of extremely water derived active species (e.g hydroxyl and/or carboxyl) on top of the Pt nanoparticles and to strong metal-support interaction (creation of Pt-Fe bonds). Using operando photon-in/photon-out spectroscopy we will study the electronic structure and local coordination of Ti, Fe and Pt.
DOI: 10.6084/m9.figshare.22261804
title: Supplementary Material for: Characteristics and Outcomes of Elderly Hepatocellular Carcinoma Patients following Surgical Resection: Systematic Review and Meta-analysis

description: Background & Aims: Due to ageing of the global population, hepatocellular carcinoma (HCC) is increasingly common among elderly patients, but outcomes after curative hepatic resection are unclear. Using a metanalytic approach, we aimed to estimate overall survival (OS), recurrence free survival (RFS) and complication rates in elderly HCC patients undergoing resection. Methods: We searched PubMed, Embase, and Cochrane databases from inception to Nov 10, 2020 for studies reporting outcomes in elderly (age ≥ 65 years) patients with HCC undergoing curative surgical resection. Pooled estimates were generated using a random-effects model. Results: We screened 8,598 articles and included 42 studies (7,778 elderly patients). The mean age was 74.45 years (95% CI 72.89-76.02), 75.54% were male (95% CI 72.53-78.32) and 66.73% had cirrhosis (95% CI 43.93-83.96). The mean tumor size was 5.50 cm (95% CI 4.71-6.29) and 16.01% had multiple tumors (95% CI 10.74-23.19). The 1-year (86.02% versus 86.66%, p=0.84) and 5-year OS (51.60% versus 53.78%) between non-elderly versus elderly patients were similar. Likewise, there were no differences in the 1-year (67.32% versus 73.26%, p=0.11) and 5-year RFS (31.57% versus 30.25%, p=0.67) in non-elderly versus elderly patients. There was a higher rate of minor complications (21.95% versus 13.71%, p=0.03) among elderly patients compared with non-elderly patients, but no difference in major complications (p=0.43) Conclusion: This data shows that overall survival, recurrence and major complications after liver resection for HCC are comparable between elderly and non-elderly patients, and may inform clinical management of HCC in this population.
DOI: 10.6084/m9.figshare.22261804.v1
title: Supplementary Material for: Characteristics and Outcomes of Elderly Hepatocellular Carcinoma Patients following Surgical Resection: Systematic Review and Meta-analysis

description: Background & Aims: Due to ageing of the global population, hepatocellular carcinoma (HCC) is increasingly common among elderly patients, but outcomes after curative hepatic resection are unclear. Using a metanalytic approach, we aimed to estimate overall survival (OS), recurrence free survival (RFS) and complication rates in elderly HCC patients undergoing resection. Methods: We searched PubMed, Embase, and Cochrane databases from inception to Nov 10, 2020 for studies reporting outcomes in elderly (age ≥ 65 years) patients with HCC undergoing curative surgical resection. Pooled estimates were generated using a random-effects model. Results: We screened 8,598 articles and included 42 studies (7,778 elderly patients). The mean age was 74.45 years (95% CI 72.89-76.02), 75.54% were male (95% CI 72.53-78.32) and 66.73% had cirrhosis (95% CI 43.93-83.96). The mean tumor size was 5.50 cm (95% CI 4.71-6.29) and 16.01% had multiple tumors (95% CI 10.74-23.19). The 1-year (86.02% versus 86.66%, p=0.84) and 5-year OS (51.60% versus 53.78%) between non-elderly versus elderly patients were similar. Likewise, there were no differences in the 1-year (67.32% versus 73.26%, p=0.11) and 5-year RFS (31.57% versus 30.25%, p=0.67) in non-elderly versus elderly patients. There was a higher rate of minor complications (21.95% versus 13.71%, p=0.03) among elderly patients compared with non-elderly patients, but no difference in major complications (p=0.43) Conclusion: This data shows that overall survival, recurrence and major complications after liver resection for HCC are comparable between elderly and non-elderly patients, and may inform clinical management of HCC in this population.
DOI: 10.25921/0ask-sx68
title: EK60 Water Column Sonar Data Collected During HB2204
DOI: 10.6084/m9.figshare.21076309.v4
title: The geophysical properties FeH phases under inner core conditions

description: This is data repository for "The geophysical properties of fcc phase FeH under inner core conditions".
DOI: 10.6084/m9.figshare.22261738
title: citrus metabolome

description: 437 metabolites in citrus
DOI: 10.5281/zenodo.7717152
title: A multiplicity of perspectives on complex urban water systems transformation - a systematic review (supplemental data)

description: This supplemental data contains all records (publication and reference materials) used in the systematic review of the literature (publication pending): 1) Full list of publication records on urban water literature using the social-ecological systems and socio-technical systems framework extracted from the Web of Science and Scopus database (raw list). 2) Selected list of corpus and sub-corpus literature from the original list after applying the inclusion and exclusion criteria. 3) Keywords mapping drawn from the reference list using the Vosviewer application.
DOI: 10.5281/zenodo.7717151
title: A multiplicity of perspectives on complex urban water systems transformation - a systematic review (supplemental data)

description: This supplemental data contains all records (publication and reference materials) used in the systematic review of the literature (publication pending): 1) Full list of publication records on urban water literature using the social-ecological systems and socio-technical systems framework extracted from the Web of Science and Scopus database (raw list). 2) Selected list of corpus and sub-corpus literature from the original list after applying the inclusion and exclusion criteria. 3) Keywords mapping drawn from the reference list using the Vosviewer application.
DOI: 10.5281/zenodo.7446267
title: Datasets accompanying scANANSE

description: The preprocessed Seurat object and the two Scanpy objects that can be used to run the scANANSE pipeline with. Seurat object: preprocessed_PBMC.Rds Scanpy objects: rna_PBMC.h5ad, atac_PBMC.h5ad Additional raw data, used to construct the preprocessed objects, supplemented from: https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_filtered_feature_bc_matrix.h5, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz.tbi,<br> https://atlas.fredhutch.org/data/nygc/multimodal/pbmc_multimodal.h5seurat
DOI: 10.5281/zenodo.7446266
title: Datasets and supplemental information accompanying scANANSE

description: This repository contains supplementary files from the paper: "<strong>scANANSE: gene regulatory network and motif analysis of single-cell clusters"</strong> as well as several accompanying datasets. The supplementary files: - Install_Rstudio.pdf - AnanseScanpy_equivalent.pdf The pre-processed Seurat object and the two pre-processed Scanpy objects can be used to run the scANANSE pipeline with: - preprocessed_PBMC.Rds - rna_PBMC.h5ad - atac_PBMC.h5ad Additional raw data, used to construct the pre-processed objects, supplemented from: https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_filtered_feature_bc_matrix.h5, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz.tbi,<br> https://atlas.fredhutch.org/data/nygc/multimodal/pbmc_multimodal.h5seura
DOI: 10.25345/c52z1303v
title: MassIVE MSV000091474 - Structural changes of proteins in multiple tissues of mice in progression AD
title: Structural changes of proteins in multiple tissues of mice in progression AD
DOI: 10.25345/c5z60cb85
title: MassIVE MSV000091475 - Tumour mitochondrial DNA mutations drive aerobic glycolysis to enhance checkpoint blockade
title: The mitochondrial genome encodes essential machinery for respiration and metabolic homeostasis but is paradoxically among the most common targets of somatic mutation in the cancer genome, with truncating mutations in respiratory complex I genes being most over-represented1. While mitochondrial DNA (mtDNA) mutations have been associated with both improved and worsened prognoses in several tumour lineages, whether these mutations are drivers or exert any functional effect on tumour biology remains controversial. Here we discovered that complex I-encoding mtDNA mutations are sufficient to remodel the tumour immune landscape and therapeutic resistance to immune checkpoint blockade. Using mtDNA base editing technology we engineered recurrent truncating mutations in the mtDNA-encoded complex I gene, Mt-Nd5, into murine models of melanoma. Mechanistically, these mutations promoted utilisation of pyruvate as a terminal electron acceptor and increased glycolytic flux driven by an over-reduced NAD pool and NADH shuttling between GAPDH and MDH1, mediating a Warburg-like metabolic shift. In turn, without modifying tumour growth, this altered cancer cell-intrinsic metabolism reshaped the tumour microenvironment promoting an anti-tumour immune response characterised by loss of resident neutrophils. This subsequently sensitised tumours bearing high mtDNA mutant heteroplasmy to immune checkpoint blockade, with phenocopy of key metabolic changes being sufficient to mediate this effect. Strikingly, patient lesions bearing &gt;50% mtDNA mutation heteroplasmy also demonstrated a &gt;2.5-fold improved response rate to checkpoint inhibitor blockade. Taken together these data nominate mtDNA mutations as functional regulators of cancer metabolism and tumour biology, with potential for therapeutic exploitation and treatment stratification.
DOI: 10.34740/kaggle/dsv/5156087
title: Elon Musk Tweets
DOI: 10.5281/zenodo.7716928
title: Dataset for BRDF representation in response to the build orientation in 3D-printed digital materials

description: This dataset folder contains data for the project "BRDF representation in response to the build orientation in 3D-printed digital materials"<br> For more information please contact Ali Payami Golhin (payami.ag@gmail.com) Abbreviations:<br> C:Cyan; M:Magenta; Y:Yellow; K:Black<br> GoG: Glossy on Glossy finish; GoM: Glossy on Matte finish Folder "Color values": presents data for CIEXYZ, CIELab, CIELCh for 328 measurement geometries for each CMYK resins<br> Folder "Spectral data": presents reflctance data for 328 measurement geometries for each CMYK resins. The first column in each file represent wavelength (nm) and the second column contains spectral data<br> File "PCA.xlsx": presents PCA (PC1) scores for CMYK colors
DOI: 10.5281/zenodo.7716929
title: Dataset for BRDF representation in response to the build orientation in 3D-printed digital materials

description: This dataset folder contains data for the project "BRDF representation in response to the build orientation in 3D-printed digital materials"<br> For more information please contact Ali Payami Golhin (payami.ag@gmail.com) Abbreviations:<br> C:Cyan; M:Magenta; Y:Yellow; K:Black<br> GoG: Glossy on Glossy finish; GoM: Glossy on Matte finish Folder "Color values": presents data for CIEXYZ, CIELab, CIELCh for 328 measurement geometries for each CMYK resins<br> Folder "Spectral data": presents reflctance data for 328 measurement geometries for each CMYK resins. The first column in each file represent wavelength (nm) and the second column contains spectral data<br> File "PCA.xlsx": presents PCA (PC1) scores for CMYK colors
DOI: 10.23728/fmi-b2share.a02cfe6e13da458f9dec96c043a4c12a
title: Yearly high flow (maximum discharge) of Southern German catchments

description: Yearly block maxima of daily discharge (1962-2099). Discharge simulations were performed with WaSiM in the scope of the ClimEx project (meteorological drivers: downscaled and bias-adjusted CRCM5-LE output, using RCP8.5 scenario conditions from 2006 onwards). The simulation domain includes the German provinces of Bavaria (full) and Baden-Wurttemberg (parts) as well as parts of Austria and Switzerland. Relevant project references: Leduc et al. 2019, Willkofer et al. 2020, Poschlod et al., 2020.
DOI: 10.6084/m9.figshare.22261939.v1
title: Supplementary Material for: Characteristics and Outcomes of Elderly Hepatocellular Carcinoma Patients following Surgical Resection: Systematic Review and Meta-analysis

description: Background & Aims: Due to ageing of the global population, hepatocellular carcinoma (HCC) is increasingly common among elderly patients, but outcomes after curative hepatic resection are unclear. Using a metanalytic approach, we aimed to estimate overall survival (OS), recurrence free survival (RFS) and complication rates in elderly HCC patients undergoing resection. Methods: We searched PubMed, Embase, and Cochrane databases from inception to Nov 10, 2020 for studies reporting outcomes in elderly (age ≥ 65 years) patients with HCC undergoing curative surgical resection. Pooled estimates were generated using a random-effects model. Results: We screened 8,598 articles and included 42 studies (7,778 elderly patients). The mean age was 74.45 years (95% CI 72.89-76.02), 75.54% were male (95% CI 72.53-78.32) and 66.73% had cirrhosis (95% CI 43.93-83.96). The mean tumor size was 5.50 cm (95% CI 4.71-6.29) and 16.01% had multiple tumors (95% CI 10.74-23.19). The 1-year (86.02% versus 86.66%, p=0.84) and 5-year OS (51.60% versus 53.78%) between non-elderly versus elderly patients were similar. Likewise, there were no differences in the 1-year (67.32% versus 73.26%, p=0.11) and 5-year RFS (31.57% versus 30.25%, p=0.67) in non-elderly versus elderly patients. There was a higher rate of minor complications (21.95% versus 13.71%, p=0.03) among elderly patients compared with non-elderly patients, but no difference in major complications (p=0.43) Conclusion: This data shows that overall survival, recurrence and major complications after liver resection for HCC are comparable between elderly and non-elderly patients, and may inform clinical management of HCC in this population.
DOI: 10.5517/ccdc.csd.cc1yvzrj
title: CCDC 1813399: Experimental Crystal Structure Determination

description: Related Article: Yan-Ling Liu, Xianchao Du, Mao-Sen Yuan|2023|Dyes Pigm.|214|111233|doi:10.1016/j.dyepig.2023.111233
description: Related Article: Mao‐Sen Yuan,  Xianchao Du,  Zhiqiang Liu Tianbao Li,  Wenji Wang,  Eric V. Anslyn,  Jinyi Wang|2018|Chem.-Eur.J.|24|9211|doi:10.1002/chem.201800884
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4s7l
title: CCDC 2209129: Experimental Crystal Structure Determination

description: Related Article: Thanh Hao Huynh, Chou-Yuan Ko, Hsin-Tzu Liu, Yen-Po Chen, Mingzi M. Zhang, Lun Kelvin Tsou, Zhi-Hong Wen, Su-Ying Chien, Ping-Jyun Sung|2023|Tetrahedron Lett.|118|154407|doi:10.1016/j.tetlet.2023.154407
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7727091
title: Brief Communication: Monitoring active layer dynamic using a lightweight nimble Ground-Penetrating Radar system. A laboratory analog test case

description: GPR dataset from Leger et al., 2023 (https://tc.copernicus.org/preprints/tc-2022-214/)
DOI: 10.6084/m9.figshare.22256626
title: NPP-VIIRS-like nighttime light data (1992-2020) in Yangtze River Delta

description: The NPP-VIIRS-like nightime light data from 1992 to 2020 covering the Yangtze River Delta . The night light time series from 1992 to 2011 was obtained by converting DMSP-OLS to NPP-VIIRS. <br>
DOI: 10.6084/m9.figshare.22261957
title: suppliments test-data.zip (for PeerJ)

description: NAFLD and BMAL1
DOI: 10.6084/m9.figshare.22261957.v1
title: suppliments test-data.zip (for PeerJ)

description: NAFLD and BMAL1
DOI: 10.12751/g-node.1b9v1w
title: High-speed low-light in vivo two-photon voltage imaging of large neuronal populations

description: This dataset includes raw experimental data and data processing code used to generate main figures in the paper 'High-Speed Low-Light In Vivo Two-Photon Voltage Imaging of Large Neuronal Populations' published in Nature Methods, 2023.
description: IsSupplementTo: Platisa J*, Ye X*, Ahrens AM, Liu C, Chen IA, Davison IG, Tian L, Pieribone VA, Chen JL. High-speed low-light in vivo two-photon voltage imaging of large neuronal populations. Nat Methods. DOI: 10.1038/s41592-023-01820-3. (https://doi.org/10.1038/s41592-023-01820-3)
DOI: 10.15151/esrf-es-1050391933
title: Graft brush copolymers as a platform for independent architectural control of softness, firmness, and strength

description: The objective of this work is to further explore the potential of a new class of brush thermoplastic elastomers for application as a framework for full replication of tissue strength, softness, and firmness. Unlike conventional ABA thermoplastic elastomers that we explored in our previous works published in Nature and Science, the A-g-B brush block copolymers have A-block segments randomly grafted through the strand backbone. In the present experiment, we will explore the space of structural parameters of these materials such as the grafting density and degree of polymerization of the side chains for the bottle-brush block, the chemical nature, and the degree of polymerization of the end-capping blocks. The combined in-situ USAXS/WAXS coupled with mechanical stretching and heating experiments will help us understand the molecular-scale processes occurring during mechanical deformation, the evolution of the microstructural organization, and its correlation to the mechanical properties.
DOI: 10.15151/esrf-es-1049152918
title: The interaction of NO with SO2-poisoned Cu-CHA deNOx catalysts

description: Cu-exchanged chabazite zeolites (Cu-CHA) are excellent catalysts for NOx removal from the exhaust gas of diesel vehicles, via the selective catalytic reduction of NO by NH3 to N2 and H2O (NH3-SCR). However, these catalysts deactivate upon exposure to SO2, that is formed from the sulfur-containing compounds in the diesel fuel. As we showed in our recent paper using XANES, EXAFS and XES data from BM23 and ID26, SO2 reacts predominantly with the [CuII2(NH3)4O2]2+ complex, and the other Cu-species in the NH3-SCR cycle remain virtually unaffected. To better understand the impact of SO2, it is important to look at the interaction between the catalyst and NO after exposure to SO2. In the proposed experiment we will reveal the influence of SO2 on the interaction between NO and Cu-CHA by monitoring the reaction of the [CuII2(NH3)4O2]2+ complex with NO in situ before and after exposure to SO2.
DOI: 10.17632/28hzmcs9vy.1
title: Effect of exercise devised to reduce arm tremor in the sighting phase of archery

description: This provides data for a study "Effect of exercise devised to reduce arm tremor in the sighting phase of archery".
DOI: 10.6084/m9.figshare.22261933
title: Long-term trends in abundance and compositional variability of butterflies in Central Europe

description: The data contains compilations of long-term museum records (1940-2017) of butterflies (Rhopalocera and Hesperiidae, families Hesperiidae, Lycaenidae, Nymphalidae, Papilionidae, Pieridae, Riodinidae) and burnet moths (Zygaenidae) from Baden-Württemberg, south-western Germany (below SW-Germany; published in Habel et al., 2019) and Salzburg, central Austria (C-Austria; Habel et al., 2022). The geographical distance between these regions ranges between 350–400 km. Both study regions are comprised of diverse habitats and have undergone severe changes in land use since the 1960s. These include increasing urbanisation and agricultural intensification, the latter accompanied by high nitrogen intake, reduced ground water levels, and pesticide applications. The C-Austrian sites suffer additionally from skiing and tracking tourism, as well as land abandonment at medium to higher elevation. The data stem from historical field books, protocols, yearly reports, index cards, literature, diaries and butterfly collections. They encompass records of complete annual butterfly communities and are stored on the InsectIS and Schmetterlingsfauna Baden-Württembergs online websites (www.insectis.de, www.schmetterlinge-bw.de) for SW-Germany. The C-Austrian data are stored in the Haus der Natur museum collection (Habel et al., 2019, 2022). In total, the SW-German data consisted of 220,758 records from 155 species, and the C- Austrian data of 55,641 records from 170 species.
DOI: 10.6084/m9.figshare.22261933.v2
title: Long-term trends in abundance and compositional variability of butterflies in Central Europe

description: The data contains compilations of long-term museum records (1940-2017) of butterflies (Rhopalocera and Hesperiidae, families Hesperiidae, Lycaenidae, Nymphalidae, Papilionidae, Pieridae, Riodinidae) and burnet moths (Zygaenidae) from Baden-Württemberg, south-western Germany (below SW-Germany; published in Habel et al., 2019) and Salzburg, central Austria (C-Austria; Habel et al., 2022). The geographical distance between these regions ranges between 350–400 km. Both study regions are comprised of diverse habitats and have undergone severe changes in land use since the 1960s. These include increasing urbanisation and agricultural intensification, the latter accompanied by high nitrogen intake, reduced ground water levels, and pesticide applications. The C-Austrian sites suffer additionally from skiing and tracking tourism, as well as land abandonment at medium to higher elevation. The data stem from historical field books, protocols, yearly reports, index cards, literature, diaries and butterfly collections. They encompass records of complete annual butterfly communities and are stored on the InsectIS and Schmetterlingsfauna Baden-Württembergs online websites (www.insectis.de, www.schmetterlinge-bw.de) for SW-Germany. The C-Austrian data are stored in the Haus der Natur museum collection (Habel et al., 2019, 2022). In total, the SW-German data consisted of 220,758 records from 155 species, and the C- Austrian data of 55,641 records from 170 species.