cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bx2xwd9gsh.1
title: Optical coherence tomography image dataset of genuine and faux leather

description: We have recorded Optical Coherence Tomography (OCT) images of both genuine and faux leather samples. The genuine leather samples comprised leather from small and large ruminants. The data is organized into three folders: FauxLeatherSamples, LargeRuminantSamples, and SmallRuminantSamples, each containing 5 distinct samples. Therefore, a total of 15 different samples (5 small ruminants, 5 large ruminants, and 5 artificial/faux leathers) were scanned at different points on their surfaces. Under the FauxLeatherSamples folder, OCT images corresponding to the 5 separate artificial leather samples are stored. To ensure approximate consistency in the data from the samples, the OCT scans were fixed to 2 mm from each image and saved in the same PNG format. We are making this labeled OCT leather type dataset publicly available. The dataset consists of raw OCT images stored in 15 separate folders, all in the same format. Each folder contains only OCT scans taken randomly over a single genuine or faux leather sample. The OCT scans corresponding to the genuine leather samples are found under the folders named LargeRuminantSamples and SmallRuminantSamples. Furthermore, under these folders, subfolders labeled 1 to 5 contain OCT scans of five different leathers, all of which are genuine. The scans are raw OCT-B image files, captured using ThorImage software on the Thorlabs OCT imaging system. No additional image processing or filtering has been performed on the raw OCT images. Each OCT scan is a separate image with the date and time of the scan stamped within the file name. For instance, under the folder LargeRuminantSamples, within Folder 1, there are OCT scans of the genuine leather sample 1, originating from a large ruminant leather piece. The file named "OCT Image 060315_12242021.png" in this folder corresponds to the OCT scan of the first leather sample taken on December 24, 2021, at 06:03:15.
DOI: 10.6084/m9.figshare.9178565
title: Additional file 9: of FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation

description: qPCR primer. (XLSX 9 kb)
DOI: 10.17632/sg6x6d5f84.3
title: Mexico's forest diversity: forest-vegetation provinces

description: The data are associated with the following article (please look there for all information): Ricker, M., M.Á. Castillo-Santiago, G. Gutiérrez-García, E.M. Martínez, and E. Mondragón. Dataset about Mexico’s forest diversity: site locations of tree species, wood densities, and geographic database of forest-vegetation provinces. Data in Brief. Under review (January 2024).
DOI: 10.6084/m9.figshare.19664167.v1
title: Chronic Sigma 1 receptor activation alleviates right ventricular dysfunction secondary to pulmonary arterial hypertension

description: Sigma 1 receptor (S1R) has shown a preferable protective effect on left ventricular function, but whether it protects right ventricular (RV) function is still elusive.This study aimed to determine the effects of S1R on RV dysfunction secondary to pulmonary arterial hypertension.Sixty wild-type male Sprague–Dawley rats were randomly divided into the control group, the fluvoxamine group, the pulmonary arterial hypertension group and the pulmonary arterial hypertension combined with fluvoxamine group. Monocrotaline (60 mg/kg) was administered to induce pulmonary arterial hypertension, and fluvoxamine was given for 21 consecutive days to activate S1R after one week of monocrotaline administration. Echocardiographic, serologic, and histologic parameters, qRT-PCR, and western blotting were conducted after 4 weeks of monocrotaline administration.The expression of S1R was decreased in the right ventricle in pulmonary arterial hypertension. TAPSE, and the FAC of the right ventricle were significantly decreased, and RV EDP and the plasma concentration of N-terminal pro-B-type natriuretic peptide was increased in the pulmonary arterial hypertension group, but fluvoxamine partly restored those abnormalities (all P &lt; 0.05). Moreover, pulmonary arteriole remodeling, and fibrosis and hypertrophy in the RV were shown in the pulmonary arterial hypertension group; interestingly, fluvoxamine recovered RV structural remodeling (all P &lt; 0.05) but neither alleviated pulmonary arteriole remodeling nor reduced pulmonary artery pressure. Furthermore, S1R activation protects RV function by upgrading the NRF 2/HO 1-mediated antioxidant stress pathway. In conclusion, chronic S1R activation ameliorates structural remodeling and RV dysfunction secondary to pulmonary arterial hypertension without altering pulmonary artery pressure.
DOI: 10.6084/m9.figshare.9178529
title: Additional file 5: of FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation

description: Individual qPCR values. (XLSX 90 kb)
DOI: 10.17632/5d78g6mmng.3
title: Mexico´s forest diversity: wood densities

description: The data are associated with the following article (please look there for all information): Ricker, M., M.Á. Castillo-Santiago, G. Gutiérrez-García, E.M. Martínez, and E. Mondragón. Dataset about Mexico’s forest diversity: site locations of tree species, wood densities, and geographic database of forest-vegetation provinces. Data in Brief. Under review (January 2024).
DOI: 10.6084/m9.figshare.12324224
title: Insights into idarubicin antimicrobial activity against methicillin-resistant <i>Staphylococcus aureus</i>

description: MRSA is a major concern in community settings and in health care. The emergence of biofilms and persister cells substantially increases its antimicrobial resistance. It is very urgent to develop new antimicrobials to solve this problem. Idarubicin was profiled to assess its antimicrobial effects <i>in vitro</i> and <i>in vivo</i>, and the underlying mechanisms. We investigated the antimicrobial effects of idarubicin against MRSA by time-kill analysis. The antibiofilm efficacy of idarubicin was assessed by crystal violet and XTT staining, followed by laser confocal microscopy observation. The mechanisms underlying the antimicrobial effects were studied by transmission electron microscopy, all-atom molecular dynamic simulations, SYTOX staining, surface plasma resonance, and DNA gyrase inhibition assay. Further, we addressed the antimicrobial efficacy in wound and subcutaneous abscess infection <i>in vivo</i>. Idarubicin kills MRSA cells by disrupting the lipid bilayers and interrupting the DNA topoisomerase IIA subunits, and idarubicin shows synergistic antimicrobial effects with fosfomycin. Through synergy with a single dose treatment fosfomycin and the addition of the cell protector amifostine, the cytotoxicity and cardiotoxicity of idarubicin were significantly reduced without affecting its antimicrobial effects. Idarubicin alone or in combination with fosfomycin exhibited considerable efficacy in a subcutaneous abscess mouse model of MRSA infection. In addition, idarubicin also showed a low probability of causing resistance and good postantibiotic effects. Idarubicin and its analogs have the potential to become a new class of antimicrobials for the treatment of MRSA-related infections.
DOI: 10.6084/m9.figshare.25211156
title: Supplementary Material for: Psychometric properties of the WBIS/-M in a representative prebariatric sample – evidence for an improved 10-item version

description: Introduction The Weight Bias Internalization Scale and the Modified Weight Bias Internalization Scale are well-established self-report questionnaires for assessing weight bias internalization, which is widespread among bariatric patients. However, among this group, psychometric properties of the Weight Bias Internalization Scale have only been examined in small samples showing unsatisfactory model fit and have not been explored for the modified questionnaire. Methods This study psychometrically evaluated and compared the Weight Bias Internalization Scale and Modified Weight Bias Internalization Scale in a large sample of prebariatric patients (N=825, mean age=46.75 years, SD=11.55) regarding item characteristics, model fit to unidimensionality, reliability, construct validity, and measurement invariance. Results Item 4 of both questionnaires showed low corrected item-total correlations (&lt;.40) and was therefore removed from the scales. The new 10-item versions showed improved item characteristics, internal consistency, model fit to unidimensionality, and convergent and divergent validity when compared to the 11-item versions. The best psychometric properties were found for the 10-item version of the Modified Weight Bias Internalization Scale. Conclusion The 10-item version of the Modified Weight Bias Internalization Scale surpasses the other versions studied in all psychometric properties. Therefore, it should be used in prebariatric patients to detect weight bias internalization and provide them with psychological interventions that could improve bariatric surgery outcomes.
DOI: 10.6084/m9.figshare.9178502.v1
title: Additional file 2: of FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation

description: FoxH1-peaks and Annotation-50k+20k. (XLSX 1476 kb)
DOI: 10.6084/m9.figshare.9178556.v1
title: Additional file 8: of FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation

description: Statistical analysis of forerunner cells. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.19583821
title: Uni_dataCovid19

description: These data are the product of a cross-sectional study on the levels of physical activity and sitting time of French university students in confinement during the Covid-19.
DOI: 10.4121/7a692e36-c32f-4916-813b-c62d2566e8d8
title: Commercial microwave link data for rainfall monitoring

description: Dataset of commercial microwave link (CML) data, which can be used to estimate path-average rainfall between telephone towers. Contains microwave frequency, end date & time of reading, minimum & maximum received power, path length, coordinates, and link identifier. For a network of on average ~2500 links covering the Netherlands having a temporal resolution of 15 min. The dataset, which consists of two files, can be used with the open-source R package RAINLINK (https://github.com/overeem11/RAINLINK) to estimate path-averaged rainfall and to make rainfall maps. Data have been used in the mentioned papers under "link to publication", but these use either a subset of the dataset or also other data.<br><br>
DOI: 10.6084/m9.figshare.9178517
title: Additional file 4: of FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation

description: Microarray vs. ChIP. (XLSX 778 kb)
DOI: 10.34644/laudatio-dev-mixvdnmb7carcq9cabmw
title: Deutsch Diachron Digital - Referenzkorpus Altdeutsch
DOI: 10.5281/zenodo.10068026
title: A Novel Approach to Impact Crater Mapping and Analysis on Enceladus, using Machine Learning: Supplemental data

description: This dataset includes the crater map and equatorial crater depths and diameters presented in the paper: A Novel Approach to Impact Crater Mapping and Analysis on Enceladus, using Machine Learning.
DOI: 10.5281/zenodo.5726877
title: Campagne Océanographique Seamount 1. Compte-rendu et liste des stations.

description: Cruise report and station list
DOI: 10.6084/m9.figshare.9178421
title: MOESM4 of Comparative transcriptome analysis reveals the genetic basis underlying the biosynthesis of polysaccharides in Hericium erinaceus

description: Additional file 4: Dataset 3. 13-co-existed genes involved in polysaccharides biosynthesis and 5 genes involved in fructose and mannose metabolism.
DOI: 10.17190/amf/1871141
title: AmeriFlux FLUXNET-1F US-NR1 Niwot Ridge Forest (LTER NWT1)

description: This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-NR1 Niwot Ridge Forest (LTER NWT1). This is the FLUXNET version of the carbon flux data for the site US-NR1 Niwot Ridge Forest (LTER NWT1) produced by applying the standard ONEFlux (1F) software. Site Description - The Niwot Ridge AmeriFlux site is located in a subalpine forest ecosystem just below the Continental Divide near Nederland, CO. The site is located at 3050 m elevation, within 600m of the NOAA C1 long-term monitoring station, approximately 8 km east of the Continental Divide. The surrounding subalpine forest is ~97 years old and in a state of aggradation, having recovered from early twentieth century logging (Monson, et al. Global Change Biology (2002), 8 459-478). Additional data, photos, and information can be found at: Burns S. P., P. D. Blanken, and R. K. Monson (2020): Data, Photographs, Videos, and Information for the Niwot Ridge Subalpine Forest (US-NR1) AmeriFlux site. AmeriFlux Management Project. https://doi.org/10.15485/1671825
DOI: 10.6084/m9.figshare.12324224.v4
title: Insights into idarubicin antimicrobial activity against methicillin-resistant <i>Staphylococcus aureus</i>

description: MRSA is a major concern in community settings and in health care. The emergence of biofilms and persister cells substantially increases its antimicrobial resistance. It is very urgent to develop new antimicrobials to solve this problem. Idarubicin was profiled to assess its antimicrobial effects <i>in vitro</i> and <i>in vivo</i>, and the underlying mechanisms. We investigated the antimicrobial effects of idarubicin against MRSA by time-kill analysis. The antibiofilm efficacy of idarubicin was assessed by crystal violet and XTT staining, followed by laser confocal microscopy observation. The mechanisms underlying the antimicrobial effects were studied by transmission electron microscopy, all-atom molecular dynamic simulations, SYTOX staining, surface plasma resonance, and DNA gyrase inhibition assay. Further, we addressed the antimicrobial efficacy in wound and subcutaneous abscess infection <i>in vivo</i>. Idarubicin kills MRSA cells by disrupting the lipid bilayers and interrupting the DNA topoisomerase IIA subunits, and idarubicin shows synergistic antimicrobial effects with fosfomycin. Through synergy with a single dose treatment fosfomycin and the addition of the cell protector amifostine, the cytotoxicity and cardiotoxicity of idarubicin were significantly reduced without affecting its antimicrobial effects. Idarubicin alone or in combination with fosfomycin exhibited considerable efficacy in a subcutaneous abscess mouse model of MRSA infection. In addition, idarubicin also showed a low probability of causing resistance and good postantibiotic effects. Idarubicin and its analogs have the potential to become a new class of antimicrobials for the treatment of MRSA-related infections.
DOI: 10.6084/m9.figshare.25013249
title: Supplementary Material for: Feasibility of colorectal endoscopic submucosal dissection in elderly patients: the impact of sarcopenia

description: Introduction: Colorectal cancer (CRC) is a public health concern associated with high incidence rates. Sarcopenia is a known risk factor for postoperative complications, although an association between increased complications after colorectal endoscopic submucosal dissection (ESD) and sarcopenia remains undocumented. Herein, we aimed to explore the feasibility of colorectal ESD in patients with sarcopenia.
Methods: This retrospective study included 499 patients (69 with and 430 without sarcopenia). We evaluated the short- and long-term outcomes of colorectal ESD.
Results: There were no significant differences between the two groups regarding en bloc, R0, or curative resection rates. However, poor bowel preparation was significantly more common in the sarcopenia group. Moreover, patients with sarcopenia exhibited a significant increase in complications (37.7% vs. 10.5%). Multivariate analysis revealed that sarcopenia (odds ratio [OR] 3.78, 95% confidence interval [Cl] 1.85–7.73, p &lt; 0.001), anticoagulation therapy (OR 3.59, 95% Cl 1.86–6.92, p &lt; 0.001), procedure time (OR 1.28, 95% Cl 1.11–1.47, p &lt; 0.001), and resection size (OR 1.25, 95% Cl 1.03–1.52, p = 0.02) were significantly correlated with Common Terminology Criteria for Adverse Events (CTCAE) ≥ grade 2. The correlation between sarcopenia and CTCAE ≥ grade 2 was maintained after matching, resulting in more extended hospital stays in patients with sarcopenia. However, we detected no association between sarcopenia and overall survival and ESD-related death.
Conclusion: Sarcopenia is a risk factor for complications in colorectal ESD, suggesting that colorectal ESD could be performed for patients with sarcopenia, although much caution should be taken.
DOI: 10.6084/m9.figshare.25003070
title: Supplementary Material for: Effects of extracorporeal blood flow rates on patient tolerance for LIXELLE® treatment during outpatient hemodialysis

description: Introduction: Accumulation of β2-microglobulin (B2M) in dialysis patients contributes to several comorbidities of end stage kidney disease (ESKD). The LIXELLE® device adsorbs B2M from blood using sorbent bead technology. Studies in Japan showed LIXELLE treatment during hemodialysis (HD) at blood flow rates up to 250 mL/min removes B2M above HD alone and is well-tolerated. We investigated tolerance for LIXELLE treatment during HD at higher HD blood flow rates standard in the United States (US).
Methods: A prospective, open-label, non-randomized, single arm, early feasibility study (EFS) assessed tolerance and safety of LIXELLE treatment during HD at blood flow rates up to 450 mL/min. ESKD patients (40-75 years old) on thrice weekly outpatient HD were eligible. After a one-week HD run-in, patients received LIXELLE plus HD at a blood flow rate of 250 mL/min (one week), followed by LIXELLE plus HD at a blood flow rate up to 450 mL/min (one week). These blood flow rates were tested with three LIXELLE column sizes in sequence (treatment = six weeks). B2M removal was assessed for each combination. 
Results: Ten patients with a historic intradialytic hypotension (IDH) rate of 0.42 events/HD session/patient were enrolled. Nine patients completed all combinations without IDH events (treatment IDH rate 0.56 events/HD session/patient). No treatment-emergent serious adverse events or significant changes in red blood cell, platelet, or complement indices except haptoglobin were reported. B2M reduction ratios and removal of select proteins (&lt;40 kDa) increased with escalating column size and blood flow rate. 
Conclusion: LIXELLE plus HD across all column sizes was safe and well-tolerated at blood flow rates up to 450 mL/min. Extent of B2M removal corresponded to column size-blood flow rate combinations. This EFS provides a risk profile to guide further studies of LIXELLE in ESKD patients at US-standard blood flow rates.
DOI: 10.6084/m9.figshare.7081952.v1
title: Additional file 13: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S11. The enrichment analysis of the differentially expressed rice genes driven by PIPs through Fisherâ s exact test comparing each pair of the proportions of the differentially expressed genes in the total genes from Additional file 8: Table S10. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9178409
title: MOESM2 of Comparative transcriptome analysis reveals the genetic basis underlying the biosynthesis of polysaccharides in Hericium erinaceus

description: Additional file 2: Dataset 1. The specificÂ primers of 10 genes selected to qRT-PCR experiment.
DOI: 10.6086/n19021tg
title: TIGER2018/FACES
title: Topological Faces (Polygons with All Geocodes)

description: Topological Faces (Polygons with All Geocodes)
DOI: 10.6086/n1jw8bwh
title: OSM2015/buildings
title: The boundaries of all buildings in the world as extracted from OpenStreetMap.

description: The boundaries of all buildings in the world as extracted from OpenStreetMap.
DOI: 10.6084/m9.figshare.12848619.v1
title: A new species of <i>Gloeandromyces</i> from Ecuador and Panama revealed by morphology and phylogenetic reconstruction, with a discussion of secondary barcodes in Laboulbeniomycetes taxonomy

description: This paper describes and illustrates a new species of Laboulbeniales (Ascomycota, Laboulbeniomycetes) recovered from <i>Mastoptera guimaraesi</i> bat flies (Diptera, Streblidae) in Ecuador and Panama. Bat fly–associated Laboulbeniales are still unexplored in the Neotropics, with only four described species of <i>Gloeandromyces</i> and one species of <i>Nycteromyces</i> known. Morphological characteristics and phylogenetic analyses support placement of the new taxon in <i>Gloeandromyces</i> and its recognition as an undescribed species. <i>Gloeandromyces hilleri</i> sp. nov. is easily recognized by 2–3 longitudinal rows of undulations at its perithecial venter. Phylogenetic reconstructions of the large subunit (LSU) ribosomal DNA and the translation elongation factor 1α (<i>TEF1</i>) both resolve <i>G. hilleri</i> and <i>G. nycteribiidarum</i> as sister species. We discuss the utility of LSU and <i>TEF1</i> as secondary barcodes in Laboulbeniomycetes taxonomy.
DOI: 10.6084/m9.figshare.12324224.v1
title: Insights into idarubicin antimicrobial activity against methicillin-resistant <i>Staphylococcus aureus</i>

description: <b>Background</b>: MRSA is a major concern in community settings and in healthcare, the emergence of biofilms and persister cells formation substantially increases the antimicrobial resistance of MRSA strains. It is very urgent to develop new antimicrobials to solve this problem. <b>Objective</b>: Idarubicin was profiled to assess its antimicrobial effects <i>in vitro</i> and <i>in vivo</i>, as well as the underlying mechanisms. <b>Methods</b>: We investigated the antimicrobial effects of idarubicin against MRSA by time-kill analysis. The antibiofilm efficacy of idarubicin was assessed by crystal violet and XTT staining, followed by laser confocal microscopy observation. The mechanisms underlying the antimicrobial effects of idarubicin were studied by transmission electron microscopy, all-atom molecular dynamics simulations, SYTOX staining, surface plasma resonance, and DNA gyrase inhibition assay. In further <i>in vivo</i> studies, we addressed the antimicrobial efficacy in wound and subcutaneous abscess infection models. <b>Results</b>: Idarubicin kills both growing and persister MRSA cells by disrupting the lipid bilayers and interrupting the DNA topoisomerase IIA subunits, and idarubicin shows synergistic antimicrobial effects with fosfomycin. Through synergy with a single dose treatment fosfomycin and the addition of the cell protector amifostine, the cytotoxicity and cardiotoxicity of idarubicin were significantly reduced without affecting its antimicrobial effects <i>in vivo</i>. Idarubicin alone or in combination with fosfomycin exhibited considerable efficacy in a subcutaneous abscess mouse model of MRSA infection. In addition, idarubicin also showed a low probability of causing resistance and good postantibiotic effects. <b>Conclusions</b>: Idarubicin and its analogues have the potential to become a new class of antimicrobials for the treatment of MRSA related infections.
DOI: 10.6084/m9.figshare.9178565.v1
title: Additional file 9: of FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation

description: qPCR primer. (XLSX 9 kb)
DOI: 10.6086/n1xk8ck6
title: OSM2015/roads
title: Roads and streets around the world each represented as a polyline extracted from OpenStreetMap

description: Roads and streets around the world each represented as a polyline extracted from OpenStreetMap
DOI: 10.6084/m9.figshare.7081517.v1
title: Additional file 5: of Genetic assessment of inbred chicken lines indicates genomic signatures of resistance to Marekâ s disease

description: Table S4. Summary statistics and ROH distributions among 8 diverse inbred lines including lines 63, 72, C, J, M, N, S and X. (XLSX 31 kb)