cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1512834.v162
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1504063
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.7284/137890
title: Gravimeter data collected during research cruise AT42-06 using a Bell BGM-3 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1504062
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1504062.v1
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1504063.v1
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1504117.v9
title: MPG Ranch 16S amplicon data

description: 16S amplicon data from soil study at MPG Ranch. Dates in file names denote sequencing runs at Argonne National Lab. Files beginning with R1 are forward read files (raw fastq files) and files beginning with I1 are index sequences. Concatenate the R1 and I1 files with the same date (in alphabetical order) prior to demultiplexing. Mapping files with barcodes are also included (text files). Dates in mapping file correspond to dates in sequence files. Demultiplex each sequencing run (date) seperately. Full metadata mapping file for all samples is also included. Open reference OTU table (97% identity, singletons removed) also included.
DOI: 10.6084/m9.figshare.1512834.v163
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1504060
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1504057
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1504058
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1504059
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1512834.v164
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.7284/137901
title: Gyrocompass data collected during research cruise AT42-06 using a Sperry MK-37 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1504060.v1
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1504057.v1
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1504058.v1
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1504059.v1
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1504056
title: Queen Mary APCs 2015 (Jan-June)

description: This spreadsheet contains details of article processing charges (APCs) paid by Queen Mary University of London 2015 (Jan-June). The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.1512834.v165
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.7284/137895
title: Meteorological Station data collected during research cruise AT42-06 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1504053
title: City University London APCs 2014-15

description: This spreadsheet contains details of article processing charges (APCs) paid by City University London during 2014 and the first half of 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.1504056.v1
title: Queen Mary APCs 2015 (Jan-June)

description: This spreadsheet contains details of article processing charges (APCs) paid by Queen Mary University of London 2015 (Jan-June). The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.1512834.v166
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.7284/137896
title: Meteorological Station data collected during research cruise AT42-06 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/wgfhn52ntx.1
title: Wheat data -nitrogen and sulfur management - for discussion of the MGIDI index

description: This dataset contains the phenotypic means for the experiment described in "Olivoto, T., Carvalho, I. R., Nardino, M., Ferrari, M., Pelegrin, A. J. de, Follmann, D. N., … Souza, V. Q. de. (2016). Sulfur and nitrogen effects on industrial quality and grain yield of wheat. Revista de Ciências Agroveterinárias, 15(1), 24–33. DOI:10.5965/223811711512016024". The experiment tested nitrogen splitting (DR, double ring; T, tillering; and B, booting stage) and sulfur application (with and without sulfur) on agronomic and rheological characteristics with the following columns TRAT: the treatment column. P: Tenacity (mm) L: Extensibility (mm) PL: P/L ratio TIL: number of tillers SSM: spikes per square meter GY: Grain yield (kg/ha) HW: Hectoliter weight W: Gluten strength [W (x10-4 J] GLU: Gluten content (%) PROT: Protein content (%)
DOI: 10.6084/m9.figshare.1504051
title: Digitising curves from scan data in Geomagic

description: This is a technical guide which illustrates how to digitise and export a curve as a series of points using scan data in Geomagic Studio, a popular scan post-processing package. This will be of use for individuals who wish to digitise curves in 3 dimensions for analysis using geometric morphometrics. Each step is illustrated by a screenshot, and scan data is also provided for users to practice with.
DOI: 10.6084/m9.figshare.1504053.v2
title: City University London APCs 2014-15

description: This spreadsheet contains details of article processing charges (APCs) paid by City University London during 2014 and the first half of 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.1504053.v1
title: City University London APCs 2015

description: This spreadsheet contains details of article processing charges (APCs) paid by City University London during 2014 and the first half of 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.1504041
title: Zebrafish data sets

description: Transmission and fluorescence data sets
DOI: 10.6084/m9.figshare.1504039
title: FISH_PROJ800_TRANS_part15

description: Transmission data set with 800 projections, part 15 of 16.
DOI: 10.6084/m9.figshare.1504040
title: FISH_PROJ800_TRANS_part16

description: Transmission data set with 800 projections, part 16 of 16.
DOI: 10.6084/m9.figshare.1504051.v1
title: Digitising curves from scan data in Geomagic

description: This is a technical guide which illustrates how to digitise and export a curve as a series of points using scan data in Geomagic Studio, a popular scan post-processing package. This will be of use for individuals who wish to digitise curves in 3 dimensions for analysis using geometric morphometrics. Each step is illustrated by a screenshot, and scan data is also provided for users to practice with.
DOI: 10.6084/m9.figshare.1512834.v167
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.7284/137893
title: Multibeam Echosounder data collected during research cruise AT42-06 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1504039.v1
title: FISH_PROJ800_TRANS_part15

description: Transmission data set with 800 projections, part 15 of 16.
DOI: 10.6084/m9.figshare.1504040.v1
title: FISH_PROJ800_TRANS_part16

description: Transmission data set with 800 projections, part 16 of 16.
DOI: 10.6084/m9.figshare.1504037
title: FISH_PROJ800_TRANS_part13

description: Transmission data set with 800 projections, part 13 of 16.
DOI: 10.6084/m9.figshare.1504038
title: FISH_PROJ800_TRANS_part14

description: Transmission data set with 800 projections, part 14 of 16.
DOI: 10.6084/m9.figshare.1504038.v1
title: FISH_PROJ800_TRANS_part14

description: Transmission data set with 800 projections, part 14 of 16.
DOI: 10.6084/m9.figshare.1512834.v168
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.7284/137897
title: Multibeam Echosounder data collected during research cruise AT42-06 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1504036
title: FISH_PROJ800_TRANS_part12

description: Transmission data set with 800 projections, part 12 of 16.
DOI: 10.6084/m9.figshare.1504037.v1
title: FISH_PROJ800_TRANS_part13

description: Transmission data set with 800 projections, part 13 of 16.
DOI: 10.6084/m9.figshare.1504041.v1
title: Zebrafish data sets

description: Transmission and fluorescence data sets
DOI: 10.6084/m9.figshare.1504034
title: FISH_PROJ800_TRANS_part10

description: Transmission data set with 800 projections, part 10 of 16.
DOI: 10.6084/m9.figshare.1504041.v3
title: Zebrafish data sets

description: Transmission and fluorescence data sets
DOI: 10.6084/m9.figshare.1504035
title: FISH_PROJ800_TRANS_part11

description: Transmission data set with 800 projections, part 11 of 16.
DOI: 10.6084/m9.figshare.1504036.v1
title: FISH_PROJ800_TRANS_part12

description: Transmission data set with 800 projections, part 12 of 16.
DOI: 10.6084/m9.figshare.1504041.v2
title: Zebrafish data sets

description: Transmission and fluorescence data sets
DOI: 10.6084/m9.figshare.1512834.v169
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1504033
title: FISH_PROJ800_TRANS_part9

description: Transmission data set with 800 projections, part 9 of 16.
DOI: 10.6084/m9.figshare.1504035.v1
title: FISH_PROJ800_TRANS_part11

description: Transmission data set with 800 projections, part 11 of 16.
DOI: 10.7284/137900
title: Radiometer data collected during research cruise AT42-06 using a Eppley RAD instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1504034.v1
title: FISH_PROJ800_TRANS_part10

description: Transmission data set with 800 projections, part 10 of 16.
DOI: 10.6084/m9.figshare.1504031
title: FISH_PROJ800_TRANS_part7

description: Transmission data set with 800 projections, part 7 of 16.
DOI: 10.6084/m9.figshare.1504032
title: FISH_PROJ800_TRANS_part8

description: Transmission data set with 800 projections, part 8 of 16.
DOI: 10.6084/m9.figshare.1504030
title: FISH_PROJ800_TRANS_part6

description: Transmission data set with 800 projections, part 6 of 16.
DOI: 10.6084/m9.figshare.1504033.v1
title: FISH_PROJ800_TRANS_part9

description: Transmission data set with 800 projections, part 9 of 16.
DOI: 10.6084/m9.figshare.1512834.v170
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.7284/137888
title: Speedlog data collected during research cruise AT42-06 using a Furuno DS-50 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1504031.v1
title: FISH_PROJ800_TRANS_part7

description: Transmission data set with 800 projections, part 7 of 16.
DOI: 10.6084/m9.figshare.1504032.v1
title: FISH_PROJ800_TRANS_part8

description: Transmission data set with 800 projections, part 8 of 16.
DOI: 10.6084/m9.figshare.1504029
title: FISH_PROJ800_TRANS_part5

description: Transmission data set with 800 projections, part 5 of 16.
DOI: 10.6084/m9.figshare.1504030.v1
title: FISH_PROJ800_TRANS_part6

description: Transmission data set with 800 projections, part 6 of 16.
DOI: 10.6084/m9.figshare.1504028
title: FISH_PROJ800_TRANS_part4

description: Transmission data set with 800 projections, part 4 of 16.
DOI: 10.6084/m9.figshare.1504029.v1
title: FISH_PROJ800_TRANS_part5

description: Transmission data set with 800 projections, part 5 of 16.