cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8414734
title: QUIN 2.0 - new release of the QUaternary fault strain INdicators database from the Southern Apennines of Italy

description: This database relates to the paper “QUIN 2.0 - new release of the QUaternary fault strain INdicators database from the Southern Apennines of Italy”, by:


Giusy Lavecchia1,2, Simone Bello1,2*, Carlo Andrenacci1,2, Daniele Cirillo1,2, Federico Pietrolungo1,2, Donato Talone1,2, Federica Ferrarini1,2, Rita de Nardis1,2, Paolo Galli3,4, Joanna Faure Walker5, Claudia Sgambato6, Marco Menichetti2,7, Carmelo Monaco2,8,9, Salvatore Gambino2,8, Giorgio De Guidi2,8, Giovanni Barreca2,8, Francesco Carnemolla2,8, Fabio Brighenti2,8, Salvatore Giuffrida2,8, Filippo Carboni2,10,11, Luigi Ferranti2,12, Luisa Valoroso13, Giovanni Toscani2,14, Massimiliano R. Barchi2,11, Gerald Roberts6 & Francesco Brozzetti1,2


QUIN 2.0 is a second release (after QUIN 1.0, Lavecchia et al., 2022 - Scientific Data) and includes 4,297 Fault Striation Pairs on 738 Structural Sites from southern Italy.


The manuscript related to the dataset here hosted is on the Journal "Scientific Data", where each of the fields of the dataset is described. Refer to the manuscript for details.
DOI: 10.14284/645
title: LifeWatch observatory data: permanent Cetacean passive acoustic sensor network in the Belgian part of the North Sea: 2018

description: As part of the Belgian LifeWatch observatory, a permanent Cetacean passive acoustic network is established in the Belgian Part of the North Sea. The sensor network uses C-PODs (Chelonia Limited) to register the presence of harbour porpoise (Phocoena phocoena) in the neighbourhood. Click trains of harbour porpoises are detected and classified using the CPOD software and high and moderate quality click trains are selected. The dataset is published yearly in the highest time resolution, per minute
DOI: 10.14284/646
title: LifeWatch observatory data: permanent Cetacean passive acoustic sensor network in the Belgian part of the North Sea: 2019

description: As part of the Belgian LifeWatch observatory, a permanent Cetacean passive acoustic network is established in the Belgian Part of the North Sea. The sensor network uses C-PODs (Chelonia Limited) to register the presence of harbour porpoise (Phocoena phocoena) in the neighbourhood. Click trains of harbour porpoises are detected and classified using the CPOD software and high and moderate quality click trains are selected. The dataset is published yearly in the highest time resolution, per minute
DOI: 10.25345/c56970835
title: MassIVE MSV000093691 - Remodeling of the protein ubiquitylation landscape in the aging vertebrate brain
title: Ubiquitylation enrichment in iNeurons treated with Bortezomib and Bafilomycin
DOI: 10.5281/zenodo.10406635
title: IODP Expedition 383 RGB channels (calculated from core photos)

description: Red, green, and blue pixel data were extracted from Section Half Imaging Logger (SHIL) linescan images, typically binned at 0.5 cm resolution using the central 2 cm of the image.
DOI: 10.5281/zenodo.10406636
title: IODP Expedition 383 RGB channels (calculated from core photos)

description: Red, green, and blue pixel data were extracted from Section Half Imaging Logger (SHIL) linescan images, typically binned at 0.5 cm resolution using the central 2 cm of the image.
DOI: 10.6084/m9.figshare.24847809
title: ITPA SNP data.xlsx

description: After obtaining approval from the ethical committee reference number(IRB-UOLFAHS/565) the HCV patients receiving direct-acting antiviral treatment were invited to participate after taking consent. Blood was drawn in aseptic conditions. DNA extraction was performed ITPA gene was amplified by the following conditions: PCR master mix (Thermo scientific by Thermo Fisher) was used with 5-10 ng/µl DNA. The thermal cycle conditions were: Denaturation at 94°C for 10 min then 35 cycles at 95 °C for 1 min, annealing at 55 °C for 30 sec, extension at 72 °C for 30 sec, and final extension at 72 °C for 10 min. PCR products were visualized under ultraviolet light after running gel electrophoresis. PCR product band size was 213bp. Following PCR, ITPA genotypes were investigated using Restriction fragment length polymorphism (RFLP). For this purpose, PCR products were treated overnight with restriction enzyme Xcel to investigate the presence of rs1127354 polymorphisms. In the case of polymorphism rs1127354, 213bp PCR product was digested into fragments 213bp, 135bp, and 78bp for (CC) homozygous dominant allele, (CA) heterozygous allele, and (AA) for homozygous recessive allele respectively. For rs7270101 polymorphism, after overnight treatment of PCR product by Mboll enzyme fragments of 213, 173, 40 bp (AC); 173, 40 bp (CC); and 213 (AA) were obvious.SNPs conformed to the Hardy-Weinberg equilibrium. For further confirmation of RFLP results, Sanger sequencing was conducted.
DOI: 10.6084/m9.figshare.24847809.v2
title: ITPA SNP data.xlsx

description: After obtaining approval from the ethical committee reference number(IRB-UOLFAHS/565) the HCV patients receiving direct-acting antiviral treatment were invited to participate after taking consent. Blood was drawn in aseptic conditions. DNA extraction was performed ITPA gene was amplified by the following conditions: PCR master mix (Thermo scientific by Thermo Fisher) was used with 5-10 ng/µl DNA. The thermal cycle conditions were: Denaturation at 94°C for 10 min then 35 cycles at 95 °C for 1 min, annealing at 55 °C for 30 sec, extension at 72 °C for 30 sec, and final extension at 72 °C for 10 min. PCR products were visualized under ultraviolet light after running gel electrophoresis. PCR product band size was 213bp. Following PCR, ITPA genotypes were investigated using Restriction fragment length polymorphism (RFLP). For this purpose, PCR products were treated overnight with restriction enzyme Xcel to investigate the presence of rs1127354 polymorphisms. In the case of polymorphism rs1127354, 213bp PCR product was digested into fragments 213bp, 135bp, and 78bp for (CC) homozygous dominant allele, (CA) heterozygous allele, and (AA) for homozygous recessive allele respectively. SNPs conformed to the Hardy-Weinberg equilibrium. For further confirmation of RFLP results, Sanger sequencing was conducted.
DOI: 10.6084/m9.figshare.24847809.v3
title: ITPA SNP data.xlsx

description: After obtaining approval from the ethical committee reference number(IRB-UOLFAHS/565) the HCV patients receiving direct-acting antiviral treatment were invited to participate after taking consent. Blood was drawn in aseptic conditions. DNA extraction was performed ITPA gene was amplified by the following conditions: PCR master mix (Thermo scientific by Thermo Fisher) was used with 5-10 ng/µl DNA. The thermal cycle conditions were: Denaturation at 94°C for 10 min then 35 cycles at 95 °C for 1 min, annealing at 55 °C for 30 sec, extension at 72 °C for 30 sec, and final extension at 72 °C for 10 min. PCR products were visualized under ultraviolet light after running gel electrophoresis. PCR product band size was 213bp. Following PCR, ITPA genotypes were investigated using Restriction fragment length polymorphism (RFLP). For this purpose, PCR products were treated overnight with restriction enzyme Xcel to investigate the presence of rs1127354 polymorphisms. In the case of polymorphism rs1127354, 213bp PCR product was digested into fragments 213bp, 135bp, and 78bp for (CC) homozygous dominant allele, (CA) heterozygous allele, and (AA) for homozygous recessive allele respectively. For rs7270101 polymorphism, after overnight treatment of PCR product by Mboll enzyme fragments of 213, 173, 40 bp (AC); 173, 40 bp (CC); and 213 (AA) were obvious.SNPs conformed to the Hardy-Weinberg equilibrium. For further confirmation of RFLP results, Sanger sequencing was conducted.
DOI: 10.5281/zenodo.10406596
title: OMAP-8: Multiplexed Antibody-Based Imaging of Placenta with Imaging Mass Cytometry (IMC), v1.0

description: OMAP-8 was designed for Imaging Mass Cytometry (IMC) (https://pubmed.ncbi.nlm.nih.gov/24584193/) of formalin-fixed paraffin-embedded (FFPE) human term-placenta samples. The tissue slides were prepared with a two-step antigen retrieval process (pH 6 and pH 9, as described https://dx.doi.org/10.17504/protocols.io.bpwumpew). OMAP antibodies validated by immunohistochemistry and IMC were conjugated to polymers containing metal isotopes. Conjugated antibodies were used to stain processed human term-placenta tissue simultaneously. Regions of the processed tissue were then acquired on the imaging mass cytometer (Hyperion; Standard BioTools) by laser ablation and visualized. The panel contains 26 antibodies conjugated to unique metal isotopes and iridium marks the DNA. This OMAP provides a spatial context for key placenta cell types in the ASCT+B v.1.0 table. Single-cell RNA sequencing data were used to guide marker selection for multiplexed tissue imaging. For example, ASCL2, HLA-G, PD-L1, CD68 and LYVE1 allow functionally specialized cell types to be visualized and quantified in the placenta. Note that one of our core antibodies is to LYVE1 but, unlike in other tissues where it is used to mark lymphatic vasculature, here we use it to mark the macrophage of the placenta (Hofbauer cells) – there should be no lymphatics in the placenta.
DOI: 10.6084/m9.figshare.20417742
title: Villin expression in human tumors: a tissue microarray study on 14,398 tumors

description: Villin is a protein of the brush border of epithelial cells, which is used as an immunohistochemical marker for colorectal and gastrointestinal neoplasms. However, other tumor entities can also express villin. To comprehensively determine villin expression, tissue microarrays containing 14,398 samples from 118 different tumor types as well as 608 samples of 76 different normal tissues were analyzed by immunohistochemistry. Villin was found in 54 of 118 tumor categories, including 36 tumor categories with strong staining. Villin expression was frequent in colorectal (60-100%), upper gastrointestinal tract (61-100%), pancreatobiliary (25-86%), and renal tumors (≤18%) as well as in mucinous ovarian cancers (67%), yolk sac tumors (76%) and in neuroendocrine neoplasms (22-41%). Reduced villin expression was linked to advanced pT stage, lymph vessel invasion, and microsatellite instability (<i>p</i> ≤ 0.0006) in colorectal adenocarcinoma. Our data support a high utility of villin immunohistochemistry for the identification of tumors with gastrointestinal, pancreatobiliary, and yolk sac tumor origin. However, considering that at least a weak villin positivity in some tumor cells occurred in 54 different tumor categories, villin immunohistochemistry should be applied as a part of a marker panel rather than as a stand-alone marker.
DOI: 10.6084/m9.figshare.20417742.v1
title: Villin expression in human tumors: a tissue microarray study on 14,398 tumors

description: Villin is a protein of the brush border of epithelial cells, which is used as an immunohistochemical marker for colorectal and gastrointestinal neoplasms. However, other tumor entities can also express villin. To comprehensively determine villin expression, tissue microarrays containing 14,398 samples from 118 different tumor types as well as 608 samples of 76 different normal tissues were analyzed by immunohistochemistry. Villin was found in 54 of 118 tumor categories, including 36 tumor categories with strong staining. Villin expression was frequent in colorectal (60-100%), upper gastrointestinal tract (61-100%), pancreatobiliary (25-86%), and renal tumors (≤18%) as well as in mucinous ovarian cancers (67%), yolk sac tumors (76%) and in neuroendocrine neoplasms (22-41%). Reduced villin expression was linked to advanced pT stage, lymph vessel invasion, and microsatellite instability (<i>p</i> ≤ 0.0006) in colorectal adenocarcinoma. Our data support a high utility of villin immunohistochemistry for the identification of tumors with gastrointestinal, pancreatobiliary, and yolk sac tumor origin. However, considering that at least a weak villin positivity in some tumor cells occurred in 54 different tumor categories, villin immunohistochemistry should be applied as a part of a marker panel rather than as a stand-alone marker.
DOI: 10.3886/icpsr23742.v1
title: Federal Justice Statistics Program: Defendants in Criminal Cases Filed in District Court, 1994 [United States]
title: Version 1

description: The data contain records of defendants in federal criminal cases filed in United States District Court during fiscal year 1994. The data were constructed from the Executive Office for United States Attorneys (EOUSA) Central System file. According to the EOUSA, the United States attorneys conduct approximately 95 percent of the prosecutions handled by the Department of Justice. The Central System data contain variables from the original EOUSA files as well as additional analysis variables, or "SAF" variables, that denote subsets of the data. These SAF variables are related to statistics reported in the Compendium of Federal Justice Statistics. Variables containing identifying information (e.g., name, Social Security Number) were replaced with blanks, and the day portions of date fields were also sanitized in order to protect the identities of individuals. These data are part of a series designed by the Urban Institute (Washington, DC) and the Bureau of Justice Statistics. Data and documentation were prepared by the Urban Institute.
description: ICPSR data undergo a confidentiality review and are altered when necessary to limit the risk of disclosure. ICPSR also routinely creates ready-to-go data files along with setups in the major statistical software formats as well as standard codebooks to accompany the data. In addition to these procedures, ICPSR performed the following processing steps for this data collection: Created variable labels and/or value labels..
description: Datasets: 
 
 DS1: Dataset
description: Federal Justice Statistics Program Data Series
description: Defendants in federal criminal cases filed in United States District Court during fiscal year 1994.
DOI: 10.3886/icpsr23742.v2
title: Federal Justice Statistics Program: Defendants in Criminal Cases Filed in District Court, 1994 [United States]
title: Version 2

description: The data contain records of defendants in federal criminal cases filed in United States District Court during fiscal year 1994. The data were constructed from the Executive Office for United States Attorneys (EOUSA) Central System file. According to the EOUSA, the United States attorneys conduct approximately 95 percent of the prosecutions handled by the Department of Justice. The Central System data contain variables from the original EOUSA files as well as additional analysis variables, or "SAF" variables, that denote subsets of the data. These SAF variables are related to statistics reported in the Compendium of Federal Justice Statistics. Variables containing identifying information (e.g., name, Social Security Number) were replaced with blanks, and the day portions of date fields were also sanitized in order to protect the identities of individuals. These data are part of a series designed by the Urban Institute (Washington, DC) and the Bureau of Justice Statistics. Data and documentation were prepared by the Urban Institute.
description: ICPSR data undergo a confidentiality review and are altered when necessary to limit the risk of disclosure. ICPSR also routinely creates ready-to-go data files along with setups in the major statistical software formats as well as standard codebooks to accompany the data. In addition to these procedures, ICPSR performed the following processing steps for this data collection: Created variable labels and/or value labels..
description: Datasets: 
 
 DS1: Dataset
description: Federal Justice Statistics Program Data Series
description: Defendants in federal criminal cases filed in United States District Court during fiscal year 1994.
DOI: 10.6084/m9.figshare.20532279
title: Bnapus.Assemblytics_structural_variants.ZY821_as_reference.vcf

description: Structural variants between ZY821 and GH06 (B.napus). ZY821 as reference.
DOI: 10.6084/m9.figshare.20532279.v1
title: Bnapus.Assemblytics_structural_variants.ZY821_as_reference.vcf

description: Structural variants between ZY821 and GH06 (B.napus). ZY821 as reference.
DOI: 10.6084/m9.figshare.20532126
title: Effect of FN1 mutation on outcomes of fibronectin glomerulopathy in a systematic review and meta-analysis

description: Supplementary data of fibronectin glomerulopathy located in this site.
DOI: 10.6084/m9.figshare.20532126.v1
title: Effect of FN1 mutation on outcomes of fibronectin glomerulopathy in a systematic review and meta-analysis

description: Supplementary data of fibronectin glomerulopathy located in this site.
DOI: 10.5517/ccdc.csd.cc2c12vc
title: CCDC 2175792: Experimental Crystal Structure Determination

description: Related Article: Ying Hou, Yin-Rong Duan, Man-Hua Ding, Lin-Li Tang, Fei Zeng|2022|RSC Advances|12|22060|doi:10.1039/D2RA03773D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.57695/9shz-dx83
title: Comparing the ignition and combustion characteristics of ball-milled Al-based composites with Ti, Zr, and Mg additives
DOI: 10.5281/zenodo.7015193
title: Data on mites in termite nests

description: Data on the experiments with mite population in termite nests
DOI: 10.5281/zenodo.7015192
title: Data on mites in termite nests

description: Data on the experiments with mite population in termite nests
DOI: 10.5517/ccdc.csd.cc1zs2pj
title: CCDC 1840398: Experimental Crystal Structure Determination

description: Related Article: Hui Zhu, Dong Liu, Yue-Hua Li, Guang-Hua Cui|2019|Inorg.Chem.Commun.|108|107539|doi:10.1016/j.inoche.2019.107539
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc22bk11
title: CCDC 1916762: Experimental Crystal Structure Determination

description: Related Article: Yanqing Di, Xiaowei Cui, Yongliang Liu, Chunsheng Zhou, Youying Di|2019|Inorg.Chem.Commun.|108|107491|doi:10.1016/j.inoche.2019.107491
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc22jywg
title: CCDC 1922926: Experimental Crystal Structure Determination

description: Related Article: Shuxin Cui, Yongcun Zou, Jinhuan Yu, Qianzhu Yin, Wenwen Zhang, Lehong Xing|2019|Inorg.Chem.Commun.|110|107610|doi:10.1016/j.inoche.2019.107610
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc22ymsg
title: CCDC 1935106: Experimental Crystal Structure Determination

description: Related Article: Nikolaos C. Anastasiadis, Zoi G. Lada, Christina D. Polyzou, Catherine P. Raptopoulou, Vassilis Psycharis, Konstantis F. Konidaris, Spyros P. Perlepes|2019|Inorg.Chem.Commun.|108|107478|doi:10.1016/j.inoche.2019.107478
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc232h4v
title: CCDC 1938806: Experimental Crystal Structure Determination

description: Related Article: Ke Wang, Shuo Feng, Pengtao Ma|2019|Inorg.Chem.Commun.|108|107511|doi:10.1016/j.inoche.2019.107511
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23bmmq
title: CCDC 1946633: Experimental Crystal Structure Determination

description: Related Article: Shixiong She, Xingye Gu, Yan Yang|2019|Inorg.Chem.Commun.|110|107584|doi:10.1016/j.inoche.2019.107584
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20532324
title: phoeniculus_purpureus_decontaminated_FSCR.fasta

description: ............
DOI: 10.6084/m9.figshare.20532324.v1
title: phoeniculus_purpureus_decontaminated_FSCR.fasta

description: ............
DOI: 10.5281/zenodo.6998921
title: Teaching Practices for DevOps Concepts

description: DevOps represents a set of practices that integrate software development and IT operation, now widely adopted in the software industry. It involves implementing various vital concepts, such as a culture of collaboration, continuous delivery, and infrastructure as code. From an educational perspective, it is essential to understand if existing courses teach DevOps fundamental concepts. This work presents a study that analyzes how DevOps courses address DevOps concepts in their teaching methodologies. We analyzed 15 courses available on GitHub by 38 DevOps concepts (e.g., continuous delivery) from Leite et al. Our results show a panorama of teaching over DevOps concepts. The analyses also identified teaching activities like lectures and projects. These results can guide educators as a reference for course improvements. The results also suggest several opportunities for researchers to improve DevOps teaching.<br>
DOI: 10.5281/zenodo.6998922
title: Understanding How DevOps Courses Teach Fundamental Concepts

description: DevOps represents a set of practices that integrate software development and IT operation, now widely adopted in the software industry. It involves implementing various vital concepts, such as a culture of collaboration, continuous delivery, and infrastructure as code. From an educational perspective, it is essential to understand if existing courses teach DevOps fundamental concepts. This work presents a study that analyzes how DevOps courses address DevOps concepts in their teaching methodologies. We analyzed 15 courses available on GitHub by 36 DevOps concepts (e.g., continuous delivery) from Leite et al. Our results show a panorama of teaching over DevOps concepts. The analyses also identified teaching activities like lectures and projects. These results can guide educators as a reference for course improvements. The results also suggest several opportunities for researchers to improve DevOps teaching.<br>