cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/a1aed6631a1e1c2b4a09aad0b352c526
title: Water column primary production from inorganic carbon uptake for 24h at simulated in situ light levels in deck incubators, collected at Palmer Station Antarctica during Palmer LTER field seasons, 1994 – 2020.

description: Primary Production experiments were led by Vernet from the 1994-1995 season through the 2006-2007 season. Schofield is the current lead, beginning in the 2009-2010 season. Methods have been kept consistent as much as possible over the full time series and different Principal Investigators. Primary production is the uptake of inorganic carbon and assimilation of it into organic matter by phytoplankton. Primary production rates, expressed as mgC per m3 per day were measured by the uptake of radioactive (14C) sodium bicarbonate. Water samples are collected throughout the water column at stations within the Palmer LTER region (primarily B and E, to 50m and 65m respectively). Water is put into borosilicate bottles, inoculated with 1 uCi of NaH14CO3 per bottle, and incubated in an outdoor deck incubator. The incubator is plumbed to the Palmer Station sea water system to maintain ambient seawater temperature and bottles are screened to in situ light levels. The uptake of 14C-bicarbonate by the phytoplankton was measured in a scintillation counter after a 24-hour incubation period.
DOI: 10.6073/pasta/ffeb2f59fe11d8a0dabbb992e6b614e2
title: Photosynthetic pigments of water column samples analyzed using High Performance Liquid Chromatography (HPLC), sampled during the Palmer LTER field seasons at Palmer Station, Antarctica, 1991 – 2019.

description: Phytoplankton pigment sampling was led by Prezelin from the 1991-1992 season through the 1993-1994 season, and then by Vernet from the 1994-1995 season through the 2006-2007 season. Schofield is the third, and current lead, beginning in the 2008-2009 season. Methods have been kept consistent as much as possible over the full time series and different Principal Investigators. Phytoplankton have a suite of accessory pigments in addition to Chlorophyll a, including other Chlorophyll’s (e.g. Chlorophyll b), Xanthophylls, and Carotenes. These accessory pigments can be used as chemotaxonomic markers to assess the composition and distribution of the phytoplankton community. For example, Fucoxanthin is a marker pigment of Diatoms, whereas Alloxanthin is a marker pigment of Cryptophytes. Accessory pigments also assist in photoacclimation and photoprotective processes. Water samples are collected throughout the water column at stations within the Palmer LTER region (primarily B and E, to 50m and 65m respectively). Water samples are filtered onto GF/F filters, and filters kept frozen at -80C until analysis. HPLC analysis is completed following Wright et al (1991). Following the guidelines set by NASA SeaHARRE, we use an internal standard and replicate injects on the HPLC to track recovery and replicability of the pigment extraction methods. Data is unavailable for the Palmer 2009-2010 season due to instrumentation problems and for the Palmer 2011-2012 season due to a freezer failure which resulted in the loss of samples. There is a temporary data gap for the Palmer 2015-2016 and Palmer 2016-2017 seasons because those samples have not been analyzed yet.
DOI: 10.6084/m9.figshare.19158620
title: MylnBrna_Bioinformatics_ProcessingData_BC_YuSong

description: Processing data for the study of <i>LncRNA Methylation in Breast Cancer by Yu Song, MD. from PUMCH, Beijing, China</i>
DOI: 10.6084/m9.figshare.19158620.v1
title: MylnBrna_Bioinformatics_ProcessingData_BC_YuSong

description: Processing data for the study of <i>LncRNA Methylation in Breast Cancer by Yu Song, MD. from PUMCH, Beijing, China</i>
DOI: 10.34740/kaggle/dsv/3168797
title: Omicron daily cases by country (COVID-19 variant)
DOI: 10.6084/m9.figshare.19158421.v1
title: gene

description: Transcriptomics was employed to analyze and compare gene expression levels of different groups. It showed that the expressions of genes (Cyp1a1, Noct, and TUBB6) related to liver injury were regulated by SBS.
DOI: 10.6084/m9.figshare.19158590
title: In-Silico Prediction of DNA Aptamers against BipD for the Detection of Burkholderia pseudomallei using Computational Method

description: Melioidosis is an infectious disease caused by the environmental bacterium <i>Burkholderia pseudomallei </i>(<i>B. pseudomallei</i>). Although the culture method is the gold standard, it cannot apply to fast on-site testing because it requires a long time. Therefore, a rapid, sensitive, and cost-effective method is highly desirable to develop for the detection of <i>B. pseudomallei</i>. In recent years, aptasensor has been widely used to detect pathogens as it is a rapid, sensitive, precise, and low-cost detection technique. We aimed to use an <i>in-silico </i>approach to overcome the inevitable shortcoming of SELEX and predict DNA aptamers with high affinity and selectivity against <i>Burkholderia </i>invasion protein D (BipD) for the detection of <i>B. pseudomallei</i>. The complex secondary structure of DNA aptamers was discovered with minimum Gibbs free energy via the mFold webserver to generate a stable tertiary structure for molecular docking. Three DNA aptamer-BipD complex with the lowest binding energy were identified through Vina software and selected for further wet laboratory validation using enzyme-linked oligonucleotide assay (ELONA) and surface plasmon resonance (SPR).<br>
DOI: 10.5517/ccdc.csd.cc27tpvm
title: CCDC 2080281: Experimental Crystal Structure Determination

description: Related Article: Essi Taipale, Marcel Siepmann, Khai-Nghi Truong, Kari Rissanen|2021|Chem.-Eur.J.|27|17412|doi:10.1002/chem.202103152
description: Related Article: Essi Taipale, Nikita A. Durandin, Jagadish K. Salunke, Nuno R. Candeias, Tero-Petri Ruoko, Jas S. Ward, Arri Priimagi, Kari Rissanen|2022|Mat.Advs.|3|1703|doi:10.1039/D1MA00438G
DOI: 10.18112/openneuro.ds004021.v1.0.0
title: Visuomotor Rotation Adaptation Experiment
DOI: 10.5281/zenodo.6041429
title: Seawater Nd isotope data of ODP Site 758

description: Here we upload the seawater Nd isotope data of ODP Site 758 from the southern Bay of Bengal. The dataset-related manuscript has been submitted to Geophysical Research Letters journal for review and possible publication. The data will be open access when the paper is published.
DOI: 10.5281/zenodo.6041428
title: Seawater Nd isotope data of ODP Site 758

description: Here we upload the seawater Nd isotope data of ODP Site 758 from the southern Bay of Bengal. The dataset-related manuscript has been submitted to Geophysical Research Letters journal for review and possible publication. The data will be open access when the paper is published.
DOI: 10.6084/m9.figshare.16625905
title: Genome annotation files for Bruguiera sexangula

description: Genome annotation files for <i>Bruguiera sexangula</i><br>
DOI: 10.13139/ornlnccs/1843214
title: ORNL/TM-2021/2046 Appendix data repository

description: Repository of data files used to generate plots for "Post-Closure Nuclear Criticality Safety Evaluations for Disposition of Criticality Control Overpacks at the Waste Isolation Pilot Plant" (ORNL/TM-2021/2046). See the readme for information contained in the individual files. See the report for description of the models used to generate the data.
DOI: 10.18112/openneuro.ds004020.v1.0.0
title: The Queensland Twin Adolescent Brain (QTAB) project
DOI: 10.11577/1844334
title: Polyimide mesh-based sample holder with irregular crystal mounting holes for fixed-target serial crystallography

description: Please check the README file for more information about the dataset.
DOI: 10.11577/1844335
title: Stable sample delivery in a viscous medium via a polyimide-based single-channel microfluidic chip for serial crystallography

description: Please check the README file for more information about the dataset.
DOI: 10.11577/1844336
title: Beef tallow injection matrix for serial crystallography

description: Please check the README file for more information about the dataset.
DOI: 10.11577/1844337
title: Beef tallow injection matrix for serial crystallography

description: Please check the README file for more information about the dataset.
DOI: 10.25984/1844347
title: 1D Heat Loss Models Validation Experiment

description: Contains data from the model validation in the 1D Heat Loss Models to Predict the Aquifer Temperature Profile during Hot/Cold Water Injection Project. The data include two COMSOL models (2D axisymmetric benchmark model and 2D Vinsome model), one python code (1D Vinsome based FEM numerical simulation), one matlab main code (1D Newton analytical solution and all results comparison visualization), and output files generated from the above models.
DOI: 10.18112/openneuro.ds004020.v1.0.1
title: The Queensland Twin Adolescent Brain (QTAB) project
DOI: 10.6084/m9.figshare.17304083
title: Non-coding RNA

description: Non-coding RNA
DOI: 10.6084/m9.figshare.17304083.v1
title: Non-coding RNA

description: Non-coding RNA
DOI: 10.6084/m9.figshare.19158734
title: Suspected and Confirmed.csv

description: Antibiotic use in suspected and confirmed COVID-19 patients admitted to healthcare facilities in Sierra Leone: Practice does not follow policy
DOI: 10.6084/m9.figshare.19158734.v1
title: Suspected and Confirmed.csv

description: Antibiotic use in suspected and confirmed COVID-19 patients admitted to healthcare facilities in Sierra Leone: Practice does not follow policy
DOI: 10.21227/5k7z-xx31
title: The preprocessed Weibo and PHEME datasets for fake news detection

description: Each dataset is splitted by trainset, devset and testset.Please read them with pytorch.
DOI: 10.5517/ccdc.csd.cc27tpwn
title: CCDC 2080282: Experimental Crystal Structure Determination

description: Related Article: Essi Taipale, Marcel Siepmann, Khai-Nghi Truong, Kari Rissanen|2021|Chem.-Eur.J.|27|17412|doi:10.1002/chem.202103152
description: Related Article: Essi Taipale, Nikita A. Durandin, Jagadish K. Salunke, Nuno R. Candeias, Tero-Petri Ruoko, Jas S. Ward, Arri Priimagi, Kari Rissanen|2022|Mat.Advs.|3|1703|doi:10.1039/D1MA00438G
DOI: 10.5517/ccdc.csd.cc28qrwn
title: CCDC 2107252: Experimental Crystal Structure Determination

description: Related Article: Li-Wen Shen, Zhen-Hua Wang, Yong You, Jian-Qiang Zhao, Ming-Qiang Zhou, Wei-Cheng Yuan|2022|Org.Lett.|24|1094|doi:10.1021/acs.orglett.2c00024
DOI: 10.5517/ccdc.csd.cc28j8x0
title: CCDC 2101022: Experimental Crystal Structure Determination

description: Related Article: Haoze Wang, Xiaokun Pei, Davide M. Proserpio, Omar M. Yaghi|2021|Isr.J.Chem.|61|774|doi:10.1002/ijch.202100102
DOI: 10.5517/ccdc.csd.cc28syvw
title: CCDC 2109359: Experimental Crystal Structure Determination

description: Related Article: Rui Wang, Kai Song, Caiyun Wei, Wenjing Hong, Yaping Zang, Dahui Qu, Hongxiang Li|2022|Phys.Chem.Chem.Phys.(PCCP)|24|2227|doi:10.1039/D1CP04671C
DOI: 10.5517/ccdc.csd.cc28wd1m
title: CCDC 2111690: Experimental Crystal Structure Determination

description: Related Article: Dong-Sheng Ji|2021|CSD Communication|||
description: Related Article: Dong-Sheng Ji, Hui Liang, Kai-Xuan Yang, Zhi-Tao Feng, Yong-Chun Luo, Guo-Qiang Xu, Yucheng Gu, Peng-Fei Xu|2022|Chemical Science|13|1801|doi:10.1039/D1SC06127E
DOI: 10.5517/ccdc.csd.cc28wtrr
title: CCDC 2112115: Experimental Crystal Structure Determination

description: Related Article: Fei-Hu Cui, Yuhui Hua, Yu-Mei Lin, Jiawei Fei, Le-Han Gao, Xiaodan Zhao, Haiping Xia|2022|J.Am.Chem.Soc.|144|2301|doi:10.1021/jacs.1c12586
DOI: 10.5517/ccdc.csd.cc28xzz5
title: CCDC 2113238: Experimental Crystal Structure Determination

description: Related Article: Ruth Weller, Markus Balmer, Carsten von Hänisch, C. Gunnar Werncke|2022|Dalton Trans.|51|1765|doi:10.1039/D1DT03805B
DOI: 10.5517/ccdc.csd.cc28y008
title: CCDC 2113239: Experimental Crystal Structure Determination

description: Related Article: Ruth Weller, Markus Balmer, Carsten von Hänisch, C. Gunnar Werncke|2022|Dalton Trans.|51|1765|doi:10.1039/D1DT03805B
DOI: 10.5517/ccdc.csd.cc28y019
title: CCDC 2113240: Experimental Crystal Structure Determination

description: Related Article: Ruth Weller, Markus Balmer, Carsten von Hänisch, C. Gunnar Werncke|2022|Dalton Trans.|51|1765|doi:10.1039/D1DT03805B
DOI: 10.6084/m9.figshare.14984705.v1
title: <i>In situ</i> microbial and phytoremediation of crude oil contaminated soil by <i>Cynodon</i> sp.

description: Crude oil contamination of land and water leads to their abandonment after heavy oil recovery processes. Analogous to bioremediation, phytoremediation has provided an efficient solution towards land reclamation through enhancement of flora. The present work manifests significance of phytoremediation via reclamation of crude oil contaminated soil collected from Kalol, India. The collected soil was analyzed for pH, oxidation–reduction potential, electrical conductivity (EC), bulk density, particle size, moisture. The experimental work consists three batch units; pot A, pot B and pot C with crude oil contaminated soil, fresh soil and control respectively. While observing plant growth for 120 days, Total Petroleum Hydrocarbon (TPH) was measured at determined intervals for estimation of percentage degradation. After 90 days of pot observation, contaminated soil was inoculated with rhizospheric bacterial inoculum developed from pot A which forms new batch for microbial-remediation as an additional scope to this work. Gas chromatography mass spectroscopy (GC-MS-MS) was carried out for determination of naphthalene contamination. Crude oil degradation in pot A was estimated as 82.16% followed with the affirmation given by degradation kinetics whereas, 60.68% and 36.75% degradation was observed in pot C-control and new batch respectively. <i>Cynodon</i> sp. grown in pot A was confirmed by identification as reported. <b>Statement of novelty</b> This work signifies the potential of phytoremediation by <i>Cynodon</i> sp. grown in crude oil contaminated soil fertilized with cow dung and corn silk. Although studies in this context are present in literature, this study adds an affirmation to it. Also it differs in terms of contamination percentage removal which is better compared to previous studies but the only demerit is that specific specie could not be identified due to time limitation. Also, the use of corn silk as fertilizer is new to literature. Indigenous microorganisms vary based on substrates and conditions and this experiment was performed on sweet crude oil extracted from Gujarat, India which adds new information to the literature.
DOI: 10.6084/m9.figshare.14984705
title: <i>In situ</i> microbial and phytoremediation of crude oil contaminated soil by <i>Cynodon</i> sp.

description: Crude oil contamination of land and water leads to their abandonment after heavy oil recovery processes. Analogous to bioremediation, phytoremediation has provided an efficient solution towards land reclamation through enhancement of flora. The present work manifests significance of phytoremediation via reclamation of crude oil contaminated soil collected from Kalol, India. The collected soil was analyzed for pH, oxidation–reduction potential, electrical conductivity (EC), bulk density, particle size, moisture. The experimental work consists three batch units; pot A, pot B and pot C with crude oil contaminated soil, fresh soil and control respectively. While observing plant growth for 120 days, Total Petroleum Hydrocarbon (TPH) was measured at determined intervals for estimation of percentage degradation. After 90 days of pot observation, contaminated soil was inoculated with rhizospheric bacterial inoculum developed from pot A which forms new batch for microbial-remediation as an additional scope to this work. Gas chromatography mass spectroscopy (GC-MS-MS) was carried out for determination of naphthalene contamination. Crude oil degradation in pot A was estimated as 82.16% followed with the affirmation given by degradation kinetics whereas, 60.68% and 36.75% degradation was observed in pot C-control and new batch respectively. <i>Cynodon</i> sp. grown in pot A was confirmed by identification as reported. <b>Statement of novelty</b> This work signifies the potential of phytoremediation by <i>Cynodon</i> sp. grown in crude oil contaminated soil fertilized with cow dung and corn silk. Although studies in this context are present in literature, this study adds an affirmation to it. Also it differs in terms of contamination percentage removal which is better compared to previous studies but the only demerit is that specific specie could not be identified due to time limitation. Also, the use of corn silk as fertilizer is new to literature. Indigenous microorganisms vary based on substrates and conditions and this experiment was performed on sweet crude oil extracted from Gujarat, India which adds new information to the literature.
DOI: 10.6084/m9.figshare.19158845
title: HomologousPairComparisons_LookingGlass_figshare.zip

description: This folder contains the files necessary to replicate the homologous and nonhomologous sequence comparisons, and their sequence similarity and LookingGlass embedding similarity, for taxonomic levels genus, family, order, class, and phylum, as presented in the paper "Deep Learning a Universal Language of Life Enables Transfer Learning and Illuminates Microbial Dark Matter" by Hoarfrost et al. (2022). <br>
DOI: 10.6084/m9.figshare.19123064
title: Recipes

description: Dataset about recipes
DOI: 10.6084/m9.figshare.19123064.v2
title: Recipes

description: Dataset about recipes
DOI: 10.6084/m9.figshare.19123064.v1
title: Recipes

description: Dataset about recipes
DOI: 10.6084/m9.figshare.19158999
title: Additional file 1 of Nationwide improvements in geriatric mortality due to traumatic brain injury in Japan

description: Additional file 1. Histogram of traumatic brain injury patients. TBI = traumatic brain injury.
DOI: 10.6084/m9.figshare.19158999.v1
title: Additional file 1 of Nationwide improvements in geriatric mortality due to traumatic brain injury in Japan

description: Additional file 1. Histogram of traumatic brain injury patients. TBI = traumatic brain injury.
DOI: 10.6084/m9.figshare.19159012
title: Additional file 1 of Cellular diversity and gene expression profiles in the male and female brain of Aedes aegypti

description: Additional file 1: Table S1. Identification of the marker genes for the brain cells of Aedes aegypti.
DOI: 10.6084/m9.figshare.19159012.v1
title: Additional file 1 of Cellular diversity and gene expression profiles in the male and female brain of Aedes aegypti

description: Additional file 1: Table S1. Identification of the marker genes for the brain cells of Aedes aegypti.
DOI: 10.6084/m9.figshare.19159015
title: Additional file 2 of Cellular diversity and gene expression profiles in the male and female brain of Aedes aegypti

description: Additional file 2: Table S2. Differentially expressed genes in each cell cluster of the male and female brain of Aedes aegypti.
DOI: 10.6084/m9.figshare.19159015.v1
title: Additional file 2 of Cellular diversity and gene expression profiles in the male and female brain of Aedes aegypti

description: Additional file 2: Table S2. Differentially expressed genes in each cell cluster of the male and female brain of Aedes aegypti.
DOI: 10.6084/m9.figshare.19159026.v1
title: Additional file 2 of High male specific contribution of the X-chromosome to individual global recombination rate in dairy cattle

description: Additional file 2. Credible sets of variants in high LD with the lead SNPs for the three fine-mapped regions. The table reports the variants in high LD with the lead SNP and their functional annotation.
DOI: 10.6084/m9.figshare.19159026
title: Additional file 2 of High male specific contribution of the X-chromosome to individual global recombination rate in dairy cattle

description: Additional file 2. Credible sets of variants in high LD with the lead SNPs for the three fine-mapped regions. The table reports the variants in high LD with the lead SNP and their functional annotation.
DOI: 10.6084/m9.figshare.19159116
title: Additional file 2 of A Capra hircus chromosome 19 locus linked to milk production influences mammary conformation

description: Additional file 2 Supplementary 2 Summary of the 340 whole genome sequence variants identified from 302 goats located within the chromosome 19 QTL interval with high linkage disequilibrium, R2 &gt; 0.8 with the most significant SNP marker rs268292132
DOI: 10.6084/m9.figshare.19159116.v1
title: Additional file 2 of A Capra hircus chromosome 19 locus linked to milk production influences mammary conformation

description: Additional file 2 Supplementary 2 Summary of the 340 whole genome sequence variants identified from 302 goats located within the chromosome 19 QTL interval with high linkage disequilibrium, R2 &gt; 0.8 with the most significant SNP marker rs268292132
DOI: 10.6084/m9.figshare.19159158
title: Additional file 1 of HiCmapTools: a tool to access HiC contact maps

description: Additional file 1. The list of epiTADs in bed format where the fourth column notes the epi-class: 1- active-red, 2- null-gray, 3-PcG-blue and 4-HP1-green.
DOI: 10.6084/m9.figshare.19159158.v1
title: Additional file 1 of HiCmapTools: a tool to access HiC contact maps

description: Additional file 1. The list of epiTADs in bed format where the fourth column notes the epi-class: 1- active-red, 2- null-gray, 3-PcG-blue and 4-HP1-green.
DOI: 10.6084/m9.figshare.19159161
title: Additional file 2 of HiCmapTools: a tool to access HiC contact maps

description: Additional file 2. Bash and R scripts for the experiment of “3.1 TAD loop”.
DOI: 10.6084/m9.figshare.19159161.v1
title: Additional file 2 of HiCmapTools: a tool to access HiC contact maps

description: Additional file 2. Bash and R scripts for the experiment of “3.1 TAD loop”.
DOI: 10.6084/m9.figshare.19159164
title: Additional file 3 of HiCmapTools: a tool to access HiC contact maps

description: Additional file 3. Bash and R scripts for the experiment of “3.2 TAD intra-density”.
DOI: 10.6084/m9.figshare.19159164.v1
title: Additional file 3 of HiCmapTools: a tool to access HiC contact maps

description: Additional file 3. Bash and R scripts for the experiment of “3.2 TAD intra-density”.
DOI: 10.6084/m9.figshare.19159174
title: Additional file 1 of Different requirement of immunity pathway components by oomycete effectors-induced cell death

description: Additional file 1: Table S1. Eight effectors from oomycetes that trigger cell death in N. benthamiana. Table S2. Primers used in this study
DOI: 10.6084/m9.figshare.19159174.v1
title: Additional file 1 of Different requirement of immunity pathway components by oomycete effectors-induced cell death

description: Additional file 1: Table S1. Eight effectors from oomycetes that trigger cell death in N. benthamiana. Table S2. Primers used in this study
DOI: 10.6084/m9.figshare.19159183
title: Additional file 1 of Genomic correlation, shared loci, and causal relationship between obesity and polycystic ovary syndrome: a large-scale genome-wide cross-trait analysis

description: Additional file 1: Table S1. Adult BMI IVs. Table S2. WHR IVs. Table S3. WHRadjBMI IVs. Table S4. childhood BMI IVs. Table S50. PCOS IVs. Table S6. Data sources, sample sizes, number of IVs and F-statistics. Table S7. Summary of contributing cohorts/consortia/studies in each GWAS. Table S8. Annotation of genome-wide significant SNPs from CPASSOC. Table S9. 99% credible set SNPs.
DOI: 10.6084/m9.figshare.19159183.v1
title: Additional file 1 of Genomic correlation, shared loci, and causal relationship between obesity and polycystic ovary syndrome: a large-scale genome-wide cross-trait analysis

description: Additional file 1: Table S1. Adult BMI IVs. Table S2. WHR IVs. Table S3. WHRadjBMI IVs. Table S4. childhood BMI IVs. Table S50. PCOS IVs. Table S6. Data sources, sample sizes, number of IVs and F-statistics. Table S7. Summary of contributing cohorts/consortia/studies in each GWAS. Table S8. Annotation of genome-wide significant SNPs from CPASSOC. Table S9. 99% credible set SNPs.