cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9897182
title: Supplementary Material for: A Clinico-Radiological Study of Cerebral Amyloid Angiopathy-Related Inflammation

description: <b><i>Objective:</i></b> To describe the clinico-radiological features and long-term prognosis in patients with cerebral amyloid angiopathy-related inflammation (CAA-ri). <b><i>Methods:</i></b> Twenty-eight CAA-ri patients were recruited retrospectively from 6 neurological centers. We recorded the clinico-radiological and biological data, at baseline and during follow-up. Baseline characteristics associated with relapse risk and prognosis were assessed. <b><i>Results:</i></b> Five patients had pathologically confirmed CAA-ri whereas 23 had probable (<i>n</i> = 21) or possible (<i>n</i> = 2) CAA-ri. The mean age was 72 years; main clinical symptoms included confusion (54%), hemiparesis (36%), and aphasia (29%). Cerebral MRI disclosed a brain parenchymal lesion (89%), which was usually multifocal (82%) and bilateral (89%). It was associated with gadolinium enhancement (84%), small ischemic lesions (39%), cortical superficial siderosis (CSS; 50%), and a high number of microbleeds (mean 240 ± 277). An isolated leptomeningeal involvement was observed in 3 patients with pathological confirmation. Despite a favorable initial evolution after treatment, we observed a 42% risk of relapse, mostly within the first year (83%). After a mean follow-up of 2 years, 29% died and 25% had a marked disability. Disseminated CSS was associated with death. <b><i>Conclusion:</i></b> Despite an apparently favorable initial evolution, CAA-ri is characterized by a poor prognosis. Diagnostic criteria should consider patients with isolated leptomeningeal involvement.
DOI: 10.6084/m9.figshare.9897164
title: Integrating Out Nuisance Parameters for Computationally More Efficient Bayesian Estimation – An Illustration and Tutorial

description: Bayesian estimation has become very popular. However, run time of Bayesian models is often unsatisfactorily high. In this illustration, we show how to reduce run time by (a) integrating out nuisance model parameters and by (b) reformulating the model based on covariances and means. The core concept is to use the sample scatter matrix which is in our case Wishart distributed with the model-implied covariance matrix as the scale matrix. To illustrate this approach, we choose the popular multi-level null (intercept-only) model, provide a step-by-step instruction on how to implement this model in a multi-purpose Bayesian software, and show how structural equation modeling techniques can be employed to bypass mathematically challenging derivations. A simulation study showed that run time is considerably reduced and an empirical example illustrates our approach. Further, we show how the JAGS sampling progress can be monitored and stopped automatically when convergence and precision criteria are reached.
DOI: 10.6084/m9.figshare.9897092
title: Supplementary Material for: Endoscopic Vacuum Therapy for Esophageal Perforation Treatment after Foreign Body Ingestion: Resolution after a Single Session

description: Medicine
DOI: 10.6084/m9.figshare.9897089
title: Metadata record for: 16S rDNA based skin microbiome data of healthy individuals and leprosy patients from India

description: This dataset contains key characteristics about the data described in the Data Descriptor 16S rDNA based skin microbiome data of healthy individuals and leprosy patients from India. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9897164.v2
title: Integrating Out Nuisance Parameters for Computationally More Efficient Bayesian Estimation – An Illustration and Tutorial

description: Bayesian estimation has become very popular. However, run time of Bayesian models is often unsatisfactorily high. In this illustration, we show how to reduce run time by (a) integrating out nuisance model parameters and by (b) reformulating the model based on covariances and means. The core concept is to use the sample scatter matrix which is in our case Wishart distributed with the model-implied covariance matrix as the scale matrix. To illustrate this approach, we choose the popular multi-level null (intercept-only) model, provide a step-by-step instruction on how to implement this model in a multi-purpose Bayesian software, and show how structural equation modeling techniques can be employed to bypass mathematically challenging derivations. A simulation study showed that run time is considerably reduced and an empirical example illustrates our approach. Further, we show how the JAGS sampling progress can be monitored and stopped automatically when convergence and precision criteria are reached.
DOI: 10.6084/m9.figshare.9897089.v2
title: Metadata record for: 16S rDNA based skin microbiome data of healthy individuals and leprosy patients from India

description: This dataset contains key characteristics about the data described in the Data Descriptor 16S rDNA based skin microbiome data of healthy individuals and leprosy patients from India. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9897164.v1
title: Integrating Out Nuisance Parameters for Computationally More Efficient Bayesian Estimation – An Illustration and Tutorial

description: Bayesian estimation has become very popular. However, run time of Bayesian models is often unsatisfactorily high. In this illustration, we show how to reduce run time by (a) integrating out nuisance model parameters and by (b) reformulating the model based on covariances and means. The core concept is to use the sample scatter matrix which is in our case Wishart distributed with the model-implied covariance matrix as the scale matrix. To illustrate this approach, we choose the popular multi-level null (intercept-only) model, provide a step-by-step instruction on how to implement this model in a multi-purpose Bayesian software, and show how structural equation modeling techniques can be employed to bypass mathematically challenging derivations. A simulation study showed that run time is considerably reduced and an empirical example illustrates our approach. Further, we show how the JAGS sampling progress can be monitored and stopped automatically when convergence and precision criteria are reached.
DOI: 10.6084/m9.figshare.9897089.v1
title: Metadata record for: 16S rDNA based skin microbiome data of healthy individuals and leprosy patients from India

description: This dataset contains key characteristics about the data described in the Data Descriptor 16S rDNA based skin microbiome data of healthy individuals and leprosy patients from India. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.9896867
title: Xu et al., Glycerol dialkyl glycerol tetraethers in surface sediments from three Pacific trenches

description: We used HPLC-MS to analyzed core Glycerol dialkyl glycerol tetraethers (GDGTs) in three Pacific trenches, namely New Britain Trench, Kermedec Trench and Atacama Trench. Our data suggests that sedimentary organic matter in three trenches is mainly derived from marine organic matter. However, the higher BIT index, lower pentamethylated/hexamethylated brGDGT and more negative δ13C support the enrichment of terrestrial OC at trench axis compared to adjacent non-hadal sites. The application of TetraEther indeX of tetraethers consisting of 86 carbon atoms (TEX86) results in sea surface temperature (SST) of 18.9–23.7 oC in KT, 28.6–30.2 oC in NBT and 17.9–20.4 oC in AT that are close to in-situ observation SST with a mean deviation of 1.1±1.4 oC over the past ca 130 years. Thus, TEX86 still appears valid as a paleo-SST proxy in the hadal environments.<br>
DOI: 10.6084/m9.figshare.9896867.v1
title: Xu et al., Glycerol dialkyl glycerol tetraethers in surface sediments from three Pacific trenches

description: We used HPLC-MS to analyzed core Glycerol dialkyl glycerol tetraethers (GDGTs) in three Pacific trenches, namely New Britain Trench, Kermedec Trench and Atacama Trench. Our data suggests that sedimentary organic matter in three trenches is mainly derived from marine organic matter. However, the higher BIT index, lower pentamethylated/hexamethylated brGDGT and more negative δ13C support the enrichment of terrestrial OC at trench axis compared to adjacent non-hadal sites. The application of TetraEther indeX of tetraethers consisting of 86 carbon atoms (TEX86) results in sea surface temperature (SST) of 18.9–23.7 oC in KT, 28.6–30.2 oC in NBT and 17.9–20.4 oC in AT that are close to in-situ observation SST with a mean deviation of 1.1±1.4 oC over the past ca 130 years. Thus, TEX86 still appears valid as a paleo-SST proxy in the hadal environments.<br>
DOI: 10.6084/m9.figshare.9896645
title: Supplementary Material for: Safety of Imatinib Mesylate in a Multicenter Expanded Access Program in Adult Patients with Gastrointestinal Stromal Tumors in the Adjuvant Setting

description: <b><i>Background:</i></b> Gastrointestinal stromal tumors (GISTs) are mesenchymal tumors most often caused by activating mutations of the <i>KIT</i> gene. KIT tyrosine kinase inhibitors provide targeted therapy for the underlying genetic mutation, and adjuvant therapy is indicated for patients who are at significant risk of relapse following GIST resection. This is a report of the safety of imatinib in patients with GIST in the adjuvant setting in an expanded access program. <b><i>Methods:</i></b> In this multicenter, open-label, single-arm trial, safety was assessed based on the frequency of adverse events (AEs). <b><i>Results:</i></b> Three hundred patients were treated and analyzed; 40 patients discontinued treatment. Median overall exposure during the program was 181 days (range 9–420); most patients (260/300 treated) completed the study. Six patients had disease recurrence, 4 of whom discontinued. In line with previously published reports, the most frequent AEs were nausea, diarrhea, and periorbital edema. The AEs were mild to moderate in most cases (76%). <b><i>Conclusions:</i></b> These findings are in agreement with the known safety profile of imatinib and confirm the safety of imatinib at 400 mg/day in the adjuvant setting. The incidence of severe AEs was low.
DOI: 10.21958/phenotype:1307
title: NAT (Natural seed Aging Treatment)

description: The germination ratio was scored after 7 days and corrected with the control germination ratio.
description: Seeds were aged for 18 months of dry-storage at ambient laboratory conditions (20-25 ºC, 40-60% RH). Chlorine gas sterilization, 7 days of seed vernalization and MS media sowing was used for 269 ecotypes to ensure same treatment and growing conditions.
DOI: 10.21958/phenotype:1310
title: EPPO (Elevated Partial Pressure of Oxygen seed-aging treatment)

description: The germination ratio was scored after 7 days and corrected with the control germination ratio.
description: Seeds were artificially aged in a 5 bar of oxygen chamber for 5 months with a 40% of relative humidity and ambient temperature (20-25 ºC). Chlorine gas sterilization, 7 days of seed vernalization and MS media sowing was used for 267 ecotypes to ensure same treatment and growing conditions.
DOI: 10.6084/m9.figshare.9896564
title: OpenStreetMap data for Australia (osm.pbf)

description: OpenStreetMap data for Australia (© OpenStreetMap) used for computing travel times to hospitals.
DOI: 10.21958/phenotype:1309
title: CDT (Controlled seed Deterioration Treatment)

description: The germination ratio was scored after 7 days and corrected with the control germination ratio.
description: Seeds were artificially aged at 38ºC in 75% relative-humidity chamber for 14 days. Chlorine gas sterilization, 7 days of seed vernalization and MS media sowing was used for 267 ecotypes to ensure same treatment and growing conditions.
DOI: 10.6084/m9.figshare.9896516
title: Guallar & Jovani 2020 Wing-feather moult phenotypes differ between the preformative and prealternate episodes and along passerine phylogeny. Ibis 162

description: Excel file containing 5456 molt cards of 440 Holarctic and Neotropical passerine species
DOI: 10.6084/m9.figshare.9896486
title: Kickstart Your Literature Search

description: A conversational 'kickstarter' for students and early career Aboriginal researchers engaging with institutional frameworks, research databases and organisational processes. A tool for teachers to bring students into one-on-one communications in a dialogic process with librarians using already prepared and articulated search parameters.
DOI: 10.6084/m9.figshare.9896516.v1
title: dataset Ibis 2019

description: Excel file containing 5456 molt cards of 440 Holarctic and Neotropical passerine species
DOI: 10.6084/m9.figshare.9896486.v2
title: Kickstart Your Literature Search

description: A conversational 'kickstarter' for students and early career Aboriginal researchers engaging with institutional frameworks, research databases and organisational processes. A tool for teachers to bring students into one-on-one communications in a dialogic process with librarians using already prepared and articulated search parameters.
DOI: 10.6084/m9.figshare.9896486.v1
title: Kickstart Your Literature Search

description: A conversational 'kickstarter' for students and early career Aboriginal researchers engaging with institutional frameworks, research databases and organisational processes. A tool for teachers to bring students into one-on-one communications in a dialogic process with librarians using already prepared and articulated search parameters.
DOI: 10.6084/m9.figshare.9896420
title: Interplay between musical practices and tuning in the <i>marimba de chonta</i> music

description: Tonal consonance theory assigns a level of dissonance to any pair of pitches played simultaneously. This theory connects timbre with tuning and proposes that tunings must use local minima of dissonance. The timbre of the <i>marimba de chonta</i> produces a broad minimum, a sharp maximum, and some sharp minima of dissonance. Here we show that the combined effect of the traditional tunings and the musical practices of this instrument only allows the use of the broad minimum, leading to special features of this music as a transposition practice that keeps geometrical distances instead of musical intervals.
DOI: 10.6084/m9.figshare.9896420.v1
title: Interplay between musical practices and tuning in the <i>marimba de chonta</i> music

description: Tonal consonance theory assigns a level of dissonance to any pair of pitches played simultaneously. This theory connects timbre with tuning and proposes that tunings must use local minima of dissonance. The timbre of the <i>marimba de chonta</i> produces a broad minimum, a sharp maximum, and some sharp minima of dissonance. Here we show that the combined effect of the traditional tunings and the musical practices of this instrument only allows the use of the broad minimum, leading to special features of this music as a transposition practice that keeps geometrical distances instead of musical intervals.
DOI: 10.6084/m9.figshare.9896399
title: Wikipedia Knowledge Graph

description: Knowledge graph generated from definitions extracted from Wikipedia articles.
DOI: 10.6084/m9.figshare.9896396
title: Variable Name Worksheet

description: Variable Names for attached Dataset
DOI: 10.6084/m9.figshare.9896390
title: Supplementary Material for: Poikilodermatous Mycosis Fungoides: Comparative Study of Clinical, Histopathological and Immunohistochemical Features

description: <b><i>Background:</i></b> Poikilodermatous mycosis fungoides (pMF) is characterized by poikiloderma areas, typically involving the major flexural areas and trunk. Its presentation can be generalized or admixed with other forms of MF. Previous studies fail to correlate the clinical presentation with prognosis and laboratory findings. Some reports show pityriasis lichenoides chronica (PLC) preceding the poikiloderma. <b><i>Objectives:</i></b> Correlate prognostic, histopathological and molecular aspects of pMF with its clinical presentation. <b><i>Methods:</i></b> Retrospective analysis of 14 cases of generalized pMF (GpMF), 22 of localized pMF (LpMF) and 17 of pMF admixed with other forms of MF (mix-pMF). <b><i>Results:</i></b> Female predominance and lower age at diagnosis was found in all groups compared to classic MF, a high prevalence of PLC-like lesions in the GpMF group and a high rate of hypopigmented lesions in the mix-pMF group. There were 2 deaths within the GpMF group. Histology was similar to previously reported findings, as was the prevalence of CD4 T-cell infiltrate, compared to CD8. The T-cell clonality positivity was lower in the GpMF group, compared to other groups (27% GpMF, 80% LpMF and 100% mix-pMF). <b><i>Discussion:</i></b> This is the first article to categorize the different forms of pMF and correlate them with clinical and laboratory findings. The dermatological presentation differs among the groups. There was a high frequency of PLC-like lesions within the GpMF group and of hypopigmented lesions in mix-pMF. The histological and immunohistochemical findings were similar to those previously reported. Aggressive treatments are not recommended due to the good prognosis of all pMF forms. The low positivity of T-cell clonality in the GpMF group should be investigated.
DOI: 10.6084/m9.figshare.9896396.v1
title: Variable Name Worksheet

description: Variable Names for attached Dataset
DOI: 10.6084/m9.figshare.9896387
title: Webster's Dictionary Knowledge Graph

description: Knowledge graph generated from natural language definitions extracted from the Webster's Unabridged Dictionary.
DOI: 10.6084/m9.figshare.12860828
title: R0191_20170921a_videos

description: Rat 0191, skilled reaching data collected on 9/21/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12860828.v1
title: R0191_20170921a_videos

description: Rat 0191, skilled reaching data collected on 9/21/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.9896381
title: Wikitionary Knowledge Graph

description: Knowledge graph generated from natural language definitions extracted from Wikitionary.
DOI: 10.6084/m9.figshare.9896387.v1
title: Webster's Dictionary Knowledge Graph

description: Knowledge graph generated from natural language definitions extracted from the Webster's Unabridged Dictionary.
DOI: 10.6084/m9.figshare.9896366
title: WordNet Knowledge Graph

description: Knowledge graph generated from natural language definitions extracted from WordNet.
DOI: 10.6084/m9.figshare.9896372
title: Metadata record for: Microsatellite genotypes of the South African Cape vulture, Gyps coprotheres

description: This dataset contains key characteristics about the data described in the Data Descriptor Microsatellite genotypes of the South African Cape vulture, Gyps coprotheres. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9896381.v2
title: Wikitionary Knowledge Graph

description: Knowledge graph generated from natural language definitions extracted from Wikitionary.
DOI: 10.6084/m9.figshare.9896372.v2
title: Metadata record for: Microsatellite genotypes of the South African Cape vulture, Gyps coprotheres

description: This dataset contains key characteristics about the data described in the Data Descriptor Microsatellite genotypes of the South African Cape vulture, Gyps coprotheres. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9896372.v1
title: Metadata record for: Microsatellite genotypes of the South African Cape vulture, Gyps coprotheres

description: This dataset contains key characteristics about the data described in the Data Descriptor Microsatellite genotypes of the South African Cape vulture, Gyps coprotheres. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.9896381.v1
title: WKT_DSR_LC_model_XML.rdf

description: Knowledge graph generated from natural language definitions extracted from Wikitionary.
DOI: 10.6084/m9.figshare.9896357
title: Supplementary Material for: Threshold Effects of Serum Uric Acid on Chronic Kidney Disease in US Women without Hypertension and Diabetes: A Cross-Sectional Study

description: <b><i>Background:</i></b> Serum uric acid (SUA) has been associated with increased risk of chronic kidney disease (CKD) in observational studies; however, data in women without hypertension and diabetes are sparse. <b><i>Purpose:</i></b> To examine the association between SUA and CKD among women without hypertension and diabetes. <b><i>Methods:</i></b> In this cross-sectional study of 6,776 US women without hypertension and diabetes from the National Health and Nutrition Examination Survey (1999–2006), we investigated the relationship between SUA and CKD using multivariable logistic regression models. Moreover, a generalized additive model and smooth curve fitting (penalized spline method) and a 2 piecewise logistic regression models were conducted to address for nonlinearity. <b><i>Results:</i></b> The prevalence of CKD was 8.3%. Multiple logistic analyses showed that per 1 mg/dL increase in SUA was associated with 39% increased prevalence of CKD. Analyses using restricted cubic spline confirmed that the association between SUA and CKD was nonlinear. Further, threshold and saturation effect analysis showed that the inflection point of SUA was 4.5 mg/dL. The ORs (95% CIs) were 0.84 (0.66–1.08) on the left side of inflection point and 1.87 (1.56–2.24) on the right side of inflection point, respectively. Subgroup analysis showed that the stronger association between SUA and CKD was observed in elder women with never/former smoking and higher fasting blood glucose levels (all <i>p</i> values for interaction &lt;0.05). <b><i>Conclusion:</i></b> Our study suggested threshold effects of SUA on the prevalence of CKD among US women without hypertension and diabetes. SUA levels &gt;4.5 mg/dL were positively and independently associated with CKD.
DOI: 10.6084/m9.figshare.9896366.v1
title: WN_DSR_LC_model_XML.rdf

description: Knowledge graph generated from natural language definitions extracted from WordNet.