cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/gk9d5dffjz
title: Applied Biomedical Engineering Using Artificial Intelligence and Cognitive Models - Chapter 7 - dataset -Cognitive learning and reasoning models applied to biomedical engineering 

description: “Pre-studies and pre-analysis of different Biomedical Engineering problems that need to be develop with specialized research projects applying Cognitive Learning and Reasoning (CL&R) algorithm, that can be integrated to the Proposed General Architecture framework of a Cognitive Computing Agents System (AI-CCAS)” with special emphasis on “Cognitive Learning and its relationship with the neuroscience of reasoning, to create specific AI cognitive models based on special human cognitive functionality factors of the affected patients,” in order to detect, evaluate, and classify different important human factors, such as “Gesture recognition,” “Speech generation,” “Mood behavior,” “Expressed Sentiments,” and others to obtain a real feedback of “nonmotor neurological symptoms,” that until now in general ways are evaluated based on procedures, questions, and answers of patients, caregivers, and others. 
Please read chapter 7 at Science Direct: https://www.sciencedirect.com/science/article/pii/B9780128207185000052 or buy the book at Elsevier, Amazon, available at bookstores worldwide.
Section 7.3.1 Research 7.1 theory for an “inference engine” shows that it is possible to extract text information stored in the “Knowledge Storage AI Database” for “COVID-19 (SARS-COVS-2)” symptoms and to define their categories. 
Section 7.3.2 Research 7.2 “Attention network” for “NLP applying long short-term memory” to classify text of COVID-19 symptoms (MATLAB_LTSM_Text).
Section 7.6.4.2.1 “Abductive reasoning—Causal arguments—Backward-chaining” Section 7.6.4.3.1 Example: “Paradigm case-based”, Section 7.6.4.4.1 Example: “Generative Coherence metric”
Section 7.6.5.1  "Abductive reasoning for medical diagnosis, Metaphoric reasoning"
Section 7.6.7.1 “Fuzzy System: Mamdani-type inference” , “Fuzzy Inference systems to control cough.” (MATLAB NEURO-FUZZY)
Section 7.6.7.2 Example “Fuzzy System: Sugeno-type inference” in MATLAB Problem to resolve Assume again the same problem to resolve from the last example: “liquid medicine for control cough” and analysis to control “cough” (MATLAB NEURO-FUZZY)
Section 7.7.1 Research 7.3 “AI model to detect and classify mood change on neurologic diseases, such as for Parkinson’s disease (PD) patients, and other neurologic diseases, by analyzing their cognitive status using their mood descriptions for yesterday and today” (folder MATLAB_COGNITIVE)
Section 7.7.2 Research 7.4 “CNN-NLP model to detect and classify deductive reasoning evaluation text on neurologic diseases patients, by analyzing their cognitive status based on their answers for three types of deductive reasoning using text propositional relational arguments” (folder MATLAB_DEDUC_REASON)
Section 7.7.3 Research 7.5 “Linguistic Neuro-Fuzzy Modeling to analyze breast cancer tumor.” Obtain a “Linguistic Neuro-Fuzzy model” to detect, analyze, and classify a “breast cancer tumor” as “Benign Cancer” or “Malignant Cancer" (folder MATLAB NEURO-FUZZY)
DOI: 10.17632/35nsjgjrms
title: Brazilian dromedaries

description: This dataset was created for the analysis of the unsuccessful government-sponsored experiment to introduce and naturalize dromedaries (Camelus dromedarius) in the northeastern Brazilian province of Ceará, which occurred between 1857 and 1867. The objective of this paper is to argue that the naturalization plan was tailored following the principles of animal acclimatization while aimed at wider efforts by the Brazilian government to modernize national agriculture. In practice, it meant the employment of the dromedaries as livestock and pack animals, which also sought to address the logistics problems in the region. The dataset below compiled six types of information about Burlamaque: (1) relevant references to the scheme in the Bulletin de la Société impérial; (2) references to the scheme in the Presidential Reports of the province of Ceará; (3) in Ministerial Reports of the Empire cabinet; (4) Ministerial Reports of the Agriculture cabinet; (5) in the Imperial Budget; and (6) in articles published by Guilherme Capanema in the Diario do Rio de Janeiro.
DOI: 10.17632/sy3fh6vx7j
title: Data for: Microinjection of Urotensin II into the Pedunculopontine Tegmentum Leads to an Increase in the Consumption of Sweet Tastants

description: Data for Ettaro et al, submitted to Physiology and Behavior
DOI: 10.17632/nn5p9tw36s
title: Data for: Fitness-Distance Balance (FDB): A New Selection Method for Meta-Heuristic Search Algorithms

description: It is the source code of developed FDB method and FDB-SOS algorithm.
DOI: 10.17632/rf6hj8kpx2
title: Multi-Decadal Spatial and Temporal Forest Cover Change Analysis of Nkandla Natural Reserve, South Africa.

description: The research was conducted on the premise that natural forest contributes to the provision of ecosystem services, but they are dwindling at an alarming rate. Periodic monitoring is needed to provide information on the status of the forest to assist in management planning. This research, therefore, presents a spatiotemporal change detection analysis of the Nkandla Forest reserve in South Africa. The research looks into the decadal changes that took place between 1989 and 2019. Four forest cover types which are closed canopy, open canopy, grasslands and bare sites were mapped and assessed. There were consistent gains and losses among each of the cover types at each decade with the prominent changes occurring between the closed and open canopy forest. These changes were as a result of ecological and chronic anthropogenic factors. The prediction of the future forest cover distribution was done for 2029 and 2039. The prediction shows a decline in the closed-canopy forest, a moderate increase in the grassland and a marginal increse in the open canopy forest.
DOI: 10.15468/dl.g4fmdn
title: Occurrence Download

description: A dataset containing 2065 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Polygala paniculata L.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2065 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001627-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/2wyc8c6m53
title: LINF_040015900

description: TCF25-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/yw5k28z97d
title: Testing Dataset for Head Segmentation Accuracy for the Algorithms in the ‘BGSLibrary’ v3.0.0 Developed by Andrews Sobral

description: This dataset consists of video files that were created to test the accuracy of background segmentation algorithms contained in the C++ wrapper ‘BGSLibrary’ v3.0.0 developed by Andrews Sobral. The comparison is based on segmentation accuracy of the algorithms on a series of indoor color-depth video clips of a single person’s head and upper body, each highlighting a common factor that can influence the accuracy of foreground-background segmentation. The algorithms are run on the color image data, while the ‘ground truth’ is semi-automatically extracted from the depth data. The camera chosen for capturing the videos features paired color-depth image sensors, with the color sensor having specifications typical of mobile devices and webcams, which cover most of the use cases for these algorithms. The factors chosen for testing are derived from a literature review accompanying the dataset as being able to influence the efficacy of background segmentation. The assessment criteria for the results were set based on the requirements of common use cases such as gamecasting and mobile communications to allow the readers to make their own judgements on the merits of each algorithm for their own purposes. A description of the algorithms in the BGSLibrary, the factors tested, and the abbreviations used in labeling the data files and folders can be found in the file 'Mendeley Data Tables.pdf'. The files in GAU10-GAU40 and UNI05-UNI20 have been compressed to save space.
DOI: 10.17632/3z6rvkfmr9
title: A program to compute variationally optimized relativistic atomic potentials

description: Abstract The computer program described in the previous paper is modified to calculate effective local potentials for electrons in atoms or ions described by the single-particle Dirac equation. The electron-electron interaction is assumed to be the Coulomb potential. The modifications to the theory necessary in the relativistic case are described in detail. The resulting potential should be useful for calculating properties of atoms for large Z values. The results of the non-relativistic calculation o... Title of program: DIRACATOMOPM Catalogue Id: ABHU_v1_0 Nature of problem The optimized potential model for an effective average potential for the electrons moving in an atom or an ion described in the preceding article is extended to the relativistic case; this permits the calculation of effects that are important for large values of Z. The relativistic problem is treated by replacing the Schroedinger wave function by Dirac spinors and the non-relativistic kinetic energy operator by the Dirac kinetic energy. The electron-electron interaction is taken to be the Coulom ... Versions of this program held in the CPC repository in Mendeley Data ABHU_v1_0; DIRACATOMOPM; 10.1016/0010-4655(89)90035-0 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/xffy76xthd
title: Unveiling the role of sodA in Streptococcus suis serotype 2: a key regulator to neutrophil defense and NETs formation

description: Streptococcus suis serotype 2 (SS2) is a major porcine pathogen. Neutrophil extracellular traps (NETs) can capture and kill pathogens, which is an essential mechanism of action of neutrophils against pathogens. However, the key genes and mechanisms of SS2-induced NETs formation remain unclear. Our study explored the role of sodA in SS2-induced neutrophil infection, with a particular focus on NETs. We found that the intraperitoneally injected sodA deletion (ΔsodA) SS2 strain recruited fewer neutrophils than the wild-type (WT) SS2 strain. Neutrophils were isolated and infected with WT or ΔsodA. The results showed that deletion of sodA reduced the bactericidal effect of SS2 on neutrophils by reducing the induction of NETs. Moreover, compared with WT, ΔsodA caused a more significant disruption of the mitochondrial membrane potential and increased reactive oxygen species levels. As GSDMD is a pore-forming protein, we investigated the role of GSDMD-N in the mitochondrial membranes during SS2 infection. The results showed that GSDMD-N contracts with mitochondria. In conclusion, sodA deficiency attenuates the ability to induce NETs in SS2 and appears to disrupt the mitochondrial membrane through the expression of GSDMD-N.
DOI: 10.17632/zks84bv2wj
title: Data for Recirculating Intestinal IgA-producing cells Regulate Neuroinflammation via IL10

description: The data set shows a collection of 6-scale point scores for Experimental Autoimmune Encephalomyelitis (EAE) induce with MOG35-55 in WT C57BL6, BAFF-Tg and Plasma Cell deficient mice. We find that some PC in the CNS of mice with EAE originate in the gut and produce IgA. Removal of PB/PC resulted in exacerbated EAE that was normalized by the introduction of gut-derived IgA+ PC.
DOI: 10.17632/3kyynpw9bw
title: Long-term vegetable production significantly reduces the selenium adsorption in two typical plastic shed soils

description: The complete raw database the paper titled "Long-term vegetable production significantly reduces the selenium adsorption in two typical plastic shed soils". It includes 6 figures, and 3 tables and supplementary materials.
DOI: 10.17632/2hyhk44zrj
title: SVR-LSM Code and Results for Wiesen, Karnath & Sperber: Disconnection somewhere down the line: Multivariate lesion-symptom mapping of the line bisection error.

description: SVR-LSM Code and Results for Wiesen, Karnath & Sperber: Disconnection somewhere down the line: Multivariate lesion-symptom mapping of the line bisection error.
DOI: 10.17632/69xc2s9whw
title: The resilience of biofilm-bound sandy systems to cyclic changes in shear stress

description: Data for paper published on Water Resources Research entitled ' The resilience of biofilm-bound sandy system to cyclic changes in shear stress'.
Sand-attached benthic biofilms drive many important biogeological processes and serve as cooperative “ecosystem engineers”. In aquatic environments, biofilms undergo periodic detachment and re-colonization due to the regular changes in hydrodynamic forcing. However, legacy impacts of past microbial actions on current biofilm formation and the biostabilization of the substratum sands are yet to be fully understood. In this study, a systematic set of flume experiments were conducted to investigate the effects of different depositional histories. Changes in the erosion threshold and rate of erosion were determined from the time sequences of suspended sediment concentrations. The contents of extracellular polymeric substances (EPS) and particle morphology of the biofilm-bound sandy matrix were analyzed. Surprisingly, biostabilization is disturbance-stimulated, rather than disturbance-limited, as previously thought. Bio-sandy beds cultivated under intensive disturbance presented an EPS accumulation in each cycle, and showed a more rapid increase in bed strength and stability than when rarely disturbed. All colonies from previous cycles exhibited traces of EPS as “footprints”. These stimulated and possibly accelerated the process of recolonization, thereby enhancing the erosion resistance of the bed. In contrast, a stabilized bed was better suited to mature microbial communities. A modified “Windows of Opportunity” framework was therefore put forward. Although biostabilization was not established within short quiescent periods, the system created the “opportunity” to become established in subsequent “windows” by seeding the colonization process. The stabilization, destabilization and re-stabilization of biofilm may imply a much more important role as ecosystem engineers and is relevant for a range of engineered bio-systems.
DOI: 10.17632/7ch42j6767
title: Long term expandable mouse and human induced nephron progenitor cells enable organoid modeling of kidney maturation, plasticity and disease

description: Nephron progenitor cells (NPCs) self-renew and differentiate into nephrons, the functional unit of the kidney. Here, manipulation of p38 and YAP activity allowed for long-term clonal expansion of primary mouse and human NPCs, and induced NPCs (iNPCs) from human pluripotent stem cells. Molecular analyses demonstrated cultured iNPCs resemble closely primary human NPCs. iNPCs generated nephron organoids with minimal off-target cell types and enhanced maturation of podocytes relative to published human kidney organoid protocols. Surprisingly, NPC culture medium uncovered plasticity in human podocyte programs, enabling podocyte reprogramming to an NPC-like state. Scalability and ease of genome-editing facilitated genome-wide CRISPR screening in NPC culture, uncovering novel genes associated with kidney development and dis-ease. Further, NPC-directed modeling of autosomal-dominant polycystic kidney disease (ADPKD) identified a small molecule inhibitor of cystogenesis. These findings highlight a broad application for the reported iNPC platform in the study of kidney development, disease, plasticity, and regeneration.
DOI: 10.17632/df8w8dct3b
title: Dataset_1

description: Dataset_1 provides seven FASTA files corresponding to protein databases. The composite database, named “All_Databases_5950827_sequences.fasta” contains protein sequences retrieved from public databases related to cephalopods salivary glands and proteins identified from our original data. This database comprises a total of 5,950,827 protein sequences and in turn it is composed by six smaller databases, named with capital letters from A to F: Database_A_19087_sequences.fasta, Database_B_16990_sequences.fasta, Database_C_2427_sequences.fasta, Database_D_84778_sequences.fasta, Database_E_5106635_sequences.fasta, Database_F_720910_sequences.fasta. Each one of these databases, contains data from several sources, i.e.: Database_A_19087_sequences.fasta – protein database from proteogenomic analyses of O. vulgaris salivary apparatus, built by Fingerhut et al. (2018); Database_B_16990_sequences.fasta – antimicrobial peptides from a non-redundant database collected by Aguilera-Mendoza et al. (2015); Database_C_2427_sequences.fasta – proteins identified with Proteome Discoverer using our 12 LTQ raw files against the UniProt database for the Metazoa taxonomic selection (2018_07 release); Database_D_84778_sequences.fasta and Database_E_5106635_sequences.fasta – proteins identified, from de novo transcriptome assemblies of 16 cephalopods posterior salivary glands, by TransDecoder and six-frame translation tool, respectively; Database_F_720910_sequences.fasta – proteins obtained by six-frame translation tool using the transcripts profiled in the transcriptome of O. vulgaris, but not included by the authors in Database_A_19087_sequences.fasta.
DOI: 10.17632/n5jf5vppk4
title: Normal Cell Differentiation Potential of Cancer Stem Cells Without Reprogramming Pluripotent Factors: a Novel Strategy in Stem Cell-Based Therapy for Tissue Regeneration 

description:      Stem cells hold great promise for tissue regeneration and have the potential to treat many incurable degenerative diseases. Cancer stem cells (CSCs), or cancer initiating cells, have the ability to self-renew and differentiate into heterogeneous lineages of cancer cells. Current stem cell therapies face limitations, such as limited stem cell sources, time consumption, tumor formation, and immune rejection upon allogeneic transplantation. Allogeneic stem cell treatments simplify stem cell manufacturing and reduce transplant time, but their therapeutic potential is limited by human leukocyte antigen (HLA)-matched donors. CSCs retain characteristics essential for tissue regeneration. However, several limitations hinder cancer stem cell reprogramming with pluripotent factors. The development of 3D culture models for tissue imitating extracellular matrix in cancer cell lines aims to enhance CSC enrichment. This mini-review focuses on a new strategy for treating incurable degenerative diseases involving in vitro and in vivo 3D cancer models and the induced differentiation of CSCs into mature normal cell types. This allows tissue survival without immune rejection and offers a safe alternative to cancer stem cell reprogramming with pluripotent factors. In conclusion, preservation and banking of allogeneic CSCs offer an alternative, readily available, and safe strategy that can be used to facilitate stem cell-based cell therapy.
DOI: 10.17632/nd7vbzyvt6
title: Data supporting the roles of BAP1, STING, and IFN-β in ISGF3 activation in ccRCC

description: Dataset contains raw western blot, qPCR, and IHC data described in "Data supporting the roles of BAP1, STING, and IFN-β in ISGF3 activation in ccRCC" in Data in Brief. This serves as companion data for our primary publication "BAP1 maintains HIF-dependent interferon beta induction to suppress tumor growth in clear cell renal cell carcinoma" published in Cancer Letters 2022.
DOI: 10.17632/6tt4tx297v
title: Taller de lectura y escritura 2023

description: Memoria de clase
DOI: 10.17632/6zp34s74nt
title: Identification and Functional Analysis of Spermatogenesis Associated Gene Modules

description: A supplemental file with the R code including session information and the R data file had been added. R code file includes normalization and batch effect R code and WGCNA R code. Annotation.csv and target.txt in R data file were used to normalization and batch effect. Clinical Traits.csv, GeneAnnotation.csv and VAR5000.csv were used to WGCNA analysis of human testis.
DOI: 10.17632/k8y4tt9682
title: Raw data-Impact of Breast Tumor Onset on Blood Count, Carcinoembryonic Antigen, Cancer Antigen 15-3 and Lymphoid Subpopulations Supported by Automatic Classification Approach

description: raw data of the research work
DOI: 10.17632/r87vx35jxt
title: Dta for: Dual Effects of TL in We-media Videos（308+2670）

description: In order to obtain accurate data on the time length of videos, it is necessary for investigators to measure customer satisfaction and participation by providing videos of different types and different time lengths as stimuli, so it seems that a rigorous and complex experiment would be inevitable. But fortunately, Bilibili has in fact provided a large number of videos of various types and time lengths, which are attached with relevant and reliable data (with a large enough number of views), hence can be considered a natural experiment of this research.
DOI: 10.17632/ddbmnmspp9
title: Barkam dateset

description: Interpretability Study of Earthquake-induced Landslide Susceptibility Combining Dimensionality Reduction and Clustering
DOI: 10.17632/69z27j4xpt
title: Data for: Seismic response of the Mars Curiosity Rover: Implications for future planetary seismology

description: The raw seismic data in seed format and temperature and other data in csv format for an experiment where seismometers were deployed on and below the engineering model of the Mars Science Laboratory Curiosity rover in order to demonstrate feasibility of deck-mounted instruments. Tools for plotting and processing the data consistent with the study are available at https://github.com/mpanning/MSL-experiment
DOI: 10.17632/gjjhtv9xm2
title: Pipit: A momentum space optical potential code for pions

description: Title of program: PIPIT Catalogue Id: ABIH_v1_0 Nature of problem Angular distributions for the elastic scattering of pions are generated by summing a partial wave series. The elastic T-matrix elements for each partial wave are obtained by solving a relativistic Lippmann- Schwinger equation in momentum space using a matrix inversion technique. The Coulomb interaction is included essentially exactly using the method of Vincent and Phatak. The piN amplitude is obtained from phase shift information on-shell and incorporates a separable off-shell form factor to en ... Versions of this program held in the CPC repository in Mendeley Data ABIH_v1_0; PIPIT; 10.1016/0010-4655(76)90072-2 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/2ctsry9wny
title: Seismic events in southern Tibet

description: Table S1 and S2 for manuscript "C. Yue, C. Y. Qu, X. J. Shan, G. J. Meng, W. Yan, H. Chen and D. L. Wu: "Coseismic deformation and stress transfer of thrust events on the MHT and their interaction with faults in southern Tibet", submitted to J. Geophys. Res.-Solid Earth.
DOI: 10.17632/xfh84npb2h
title: GRM1 RNA-Seq from TCGA for Alpha–radiopharmaceutical 211At-AITM reduces mGluR1 and induces senescence to elicit long-lasting antitumor efficacy

description: GRM1 RNA-Seq from TCGA
DOI: 10.17632/5t7sdpn6x5
title: raw image data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_Figure ED 1-10_part_16

description: raw image data for "Resilient anatomy and local plasticity of naïve and stress hematopoiesis "_Figure ED 1-10_part_16