cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12751250.v1
title: Additional file 1 of Deciphering the archaeal communities in tree rhizosphere of the Qinghai-Tibetan plateau

description: Additional file 1 Table S1. Soil physicochemical properties of the rhizosphere and bulk soils. Data are means ± SD in parentheses, and different letters in the columns indicate significant differences (P &lt; 0.05). Table S2. ANOSIM analyses of separable compartments on archaeal community beta diversity distance matrix. P. crassifoli and P. szechuanica means the rhizosphere soil of Picea crassifolia and Populus szechuanica. Table S3. Comparison of sample differences in abundance of phyla. Data are means ± SD in parentheses. Different letters indicate significant levels (Dunnett test, P &lt; 0.05). For abbreviations, see Table S1. Table S4 Factors affecting the structure of archaeal communities in the rhizosphere and the bulk soil revealed by PERMANOVA. NS means not significant. Table S5. Co-occurrence network topological features statistics in three compartments. For abbreviations, see Table S1. Figure S1. Rarefaction curves comparing the number of sequences with the number of observed OTUs for archaeal communities in each sample. For abbreviations, see Table 1. Figure S2. Principal coordinate analysis (PCoA) ordination of archaeal communities based on MNTD index. For abbreviations, see Table 1. Figure S3. The phylogenetic trees of archaea. The numbers above each split were local support values. Figure S4. Mantel correlogram between the phylogenetic distances of pairwise OTUs and their niche distance of archaea.
DOI: 10.6084/m9.figshare.8032907.v1
title: Additional file 4: of Identification of genomic regions associated with multi-silique trait in Brassica napus

description: Table S3. Annotations of the 2041 genes in the two intersection associated regions. (XLSX 340 kb)
DOI: 10.6084/m9.figshare.8032916.v1
title: Additional file 5: of Identification of genomic regions associated with multi-silique trait in Brassica napus

description: Table S4. GO enrichment in biological processes (BP) category of the genes. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.8032922.v1
title: Additional file 7: of Identification of genomic regions associated with multi-silique trait in Brassica napus

description: Table S6. GO enrichment in molecular function (MF) category of the genes. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.12751335.v1
title: Additional file 3 of Patient specific circulating tumor DNA fingerprints to monitor treatment response across multiple tumors

description: Additional file 3: Table S3. Acquired drug-related mutations in nine patients identified using a pre-designed ctDNA panel.
DOI: 10.6084/m9.figshare.22706069.v1
title: Additional file 3 of MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions

description: Additional file 3: Table S2. List of MORC7 interacting proteins.
DOI: 10.6084/m9.figshare.6984455.v1
title: A slab break-off model for mafic–ultramafic igneous complexes in the East Kunlun Orogenic Belt, northern Tibet: insights from early Palaeozoic accretion related to post-collisional magmatism

description: The East Kunlun Orogenic Belt (EKOB) in northern Tibet provides an important record of the amalgamation of the Wanbaogou oceanic basalt plateau and the Qaidam Block. Here we report geochemical, geochronological, and Hf isotopic data for newly identified late Silurian–Early Devonian mafic–ultramafic igneous complexes from the EKOB at the northern margin of the Tibetan Plateau. These complexes are dominantly composed of gabbro and pyroxenite rocks. Three complexes yield zircon U–Pb ages of 398.8 ± 1.8, 420.2 ± 1.2, and 413.4 ± 0.78 Ma. The ε<sub>Hf</sub>(t) values of zircons range from +0.8 to +3.3 with T<sub>DM1</sub> ages of 897 to 998 Ma. Modelling of the geochemical data indicates that these igneous complexes have a hybrid origin, involving depleted mantle fluids derived from a previous subduction event and crustal materials. The geochemical and geochronological data suggest that these complexes formed in a post-collisional setting linked to break-off of a subducted oceanic slab, which occurred after the Wanbaogou oceanic basalt plateau amalgamated with the Qaidam Block in the late Silurian–Early Devonian.
DOI: 10.6084/m9.figshare.8032823
title: Additional file 4 of LightCpG: a multi-view CpG sites detection on single-cell whole genome sequence data

description: The performance of different distances using the heart left ventricle and GM12878 datasets. (XLSX 32.1 kb)
DOI: 10.6084/m9.figshare.8032937.v1
title: Additional file 2: of Comprehensive characterization of T-DNA integration induced chromosomal rearrangement in a birch T-DNA mutant

description: Data S1. The sequences of pGWB2-BpCCR1. (TXT 16 kb)
DOI: 10.6084/m9.figshare.22706075
title: Additional file 5 of MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions

description: Additional file 5: Table S4. Primers used in this study.
DOI: 10.6084/m9.figshare.8032823.v1
title: Additional file 4 of LightCpG: a multi-view CpG sites detection on single-cell whole genome sequence data

description: The performance of different distances using the heart left ventricle and GM12878 datasets. (XLSX 32.1 kb)
DOI: 10.6084/m9.figshare.8032907
title: Additional file 4: of Identification of genomic regions associated with multi-silique trait in Brassica napus

description: Table S3. Annotations of the 2041 genes in the two intersection associated regions. (XLSX 340 kb)
DOI: 10.6084/m9.figshare.6984455
title: A slab break-off model for mafic–ultramafic igneous complexes in the East Kunlun Orogenic Belt, northern Tibet: insights from early Palaeozoic accretion related to post-collisional magmatism

description: The East Kunlun Orogenic Belt (EKOB) in northern Tibet provides an important record of the amalgamation of the Wanbaogou oceanic basalt plateau and the Qaidam Block. Here we report geochemical, geochronological, and Hf isotopic data for newly identified late Silurian–Early Devonian mafic–ultramafic igneous complexes from the EKOB at the northern margin of the Tibetan Plateau. These complexes are dominantly composed of gabbro and pyroxenite rocks. Three complexes yield zircon U–Pb ages of 398.8 ± 1.8, 420.2 ± 1.2, and 413.4 ± 0.78 Ma. The ε<sub>Hf</sub>(t) values of zircons range from +0.8 to +3.3 with T<sub>DM1</sub> ages of 897 to 998 Ma. Modelling of the geochemical data indicates that these igneous complexes have a hybrid origin, involving depleted mantle fluids derived from a previous subduction event and crustal materials. The geochemical and geochronological data suggest that these complexes formed in a post-collisional setting linked to break-off of a subducted oceanic slab, which occurred after the Wanbaogou oceanic basalt plateau amalgamated with the Qaidam Block in the late Silurian–Early Devonian.
DOI: 10.6084/m9.figshare.22706012.v1
title: Additional file 1 of Meta-organism gene expression reveals that the impact of nitrate enrichment on coral larvae is mediated by their associated Symbiodiniaceae and prokaryotic assemblages

description: Additional file 1: Table S1. Statistics of transcriptome de novo assembly. Table S2. Pair reads per sample mapping against different reference transcriptome. Table S3. Symbiodiniaceae community structure in different treatments. Table S4. Pathways related to coral differentially expressed transcripts in different treatments. Table S5. Pathways related to Symbiodiniaceae differentially expressed transcripts in different treatments. Table S6. Pathways related to prokaryotic differentially expressed transcripts in different treatments. Table S7. Functions of corals enriched transcript sets in different treatments. Table S8. Functions of Symbiodiniaceae enriched transcript sets in different treatments. Table S9. Functions of prokaryotic microbes enriched transcript sets in different treatments. Table S10. Detailed information of significantly correlated coral transcripts with Symbiodiniaceae physiology detected in GLMMLasso model. Table S11. Detailed information of significantly correlated prokaryotic transcripts with Symbiodiniaceae physiology detected in GLMMLasso model. Table S12. Parameters for analytical model example. Table S13. Nitrate concentration of each treatment during the 5-days experiment. Figure S1. MA plots of different comparisons (control-5, control-10, control-20, control-40) in coral (A, B, C, D), Symbiodiniaceae (E, F, G, H) and prokaryotic microbes (I, J, K, L). Figure S2. Prokaryotic community structures at phylum (A) and genus level (B) by Kraken2. Only genera with top 20 highest relative abundance were presented in the legend. Figure S3. Functions of shared transcripts in different comparisons. Representing coral (A), Symbiodiniaceae (B) and prokaryotic (C) shared transcripts, respectively. Figure S4. Functions of core transcripts in correlation networks. Representing coral (A) and Symbiodiniaceae (B) core transcripts in coral-algal network; Symbiodiniaceae (C) and prokaryotic microbial (D) core transcripts in algal-microbial network; coral (E) and prokaryotic microbial (F) core transcripts in coral-microbial network. Figure S5. Algal density (A) and photosynthetic rate (B) of larvae from different groups. Each dot in A represents a single larva. Each box in A and B represent the Q1-Q3 range in each group, and the whiskers in each box represent Q1 - 1.5SD and Q3 + 1.5SD of each group. Q1 and Q3 are the first and third quartile, and SD is the standard deviation. The line in each box represents the mean value for each group. PN and PG in B represent the net photosynthetic rate and gross photosynthetic rate, respectively. Figure S6. Location of sampling area. Star indicates the sampling and researching area, CAS-HKUST Sanya Joint Laboratory of Marine Science Research. HN, Hainan Island.
DOI: 10.6084/m9.figshare.8032832
title: Additional file 5 of LightCpG: a multi-view CpG sites detection on single-cell whole genome sequence data

description: The performance of different windows using the HCCs dataset. (XLSX 29.5 kb)
DOI: 10.6084/m9.figshare.8032838
title: Additional file 6 of LightCpG: a multi-view CpG sites detection on single-cell whole genome sequence data

description: The performance of different features using the HCCs dataset. (XLSX 21.3 kb)
DOI: 10.6084/m9.figshare.8032844
title: Additional file 7 of LightCpG: a multi-view CpG sites detection on single-cell whole genome sequence data

description: The results of different methods using the HCCs dataset. (XLSX 35.8 kb)
DOI: 10.6084/m9.figshare.14324494.v1
title: Theory of Weightless Sagging Elasto-Flexible Cables

description: Abstract In this Paper, a theory of single sagging planer weightless elasto-flexible cables is proposed. In reference to the instantaneous natural state, hypoelastic rate- type constitutive equations and third-order nonlinear differential equations of planer motion for massless cables with nodal masses are derived. New concepts like configurational complementary potential and contra-gradient principles are proposed. Typical dynamic response of these elastic cables with different sustained loads, axial rigidity and sag/span ratios is determined. Modal, subharmonic and internal resonances, jump and beat phenomena, etc., a re predicted. A new mode of damping of 'free' vibration of the system perturbed from its equilibrium state is identified. Significance of the proposed theory of weightless sagging elasto-flexible cables is discussed.
DOI: 10.6084/m9.figshare.8032859.v1
title: Additional file 10: of Identification of genomic regions associated with multi-silique trait in Brassica napus

description: Table S9. KEGG enrichment of the 2041 genes in the intersection associated regions. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.14324554
title: Peripheral Deformation and Buckling of Stainless Steel Hemispherical Shells Compressed by a Flat Plate

description: Abstract An experimental investigation was performed on stainless steel hemispherical shells under axial compression. Eight kinds of shells with radius-to-thickness ratios that range from 57.1 to 125 were designed and manufactured for this study. The shells were compressed to more than 50% of their radii by a solid flat plate. To avoid contact between the base plate and the deformed central part of the shells, most of the shells were placed on a plate with a hole in the center. Nonetheless, one type of shell was placed on a solid base plate without a hole to analyze the effect of the base plate. As per an observation of collapse modes and load-deformation shell relations, the deformation process of a hemispherical shell that is compressed by a flat plate can be divided into four stages: local flattening (Stage I), axi-symmetric inward dimpling (Stage II), non-symmetric multiple lobes (Stage III), and peripheral deformation and buckling stage (Stage IV). The present study mainly studies Stage IV, which can be categorized into peripheral compression (Stage A), peripheral buckling (Stage B), buckling expanding (Stage C), and overall collapse (Stage D).
DOI: 10.6084/m9.figshare.22706012
title: Additional file 1 of Meta-organism gene expression reveals that the impact of nitrate enrichment on coral larvae is mediated by their associated Symbiodiniaceae and prokaryotic assemblages

description: Additional file 1: Table S1. Statistics of transcriptome de novo assembly. Table S2. Pair reads per sample mapping against different reference transcriptome. Table S3. Symbiodiniaceae community structure in different treatments. Table S4. Pathways related to coral differentially expressed transcripts in different treatments. Table S5. Pathways related to Symbiodiniaceae differentially expressed transcripts in different treatments. Table S6. Pathways related to prokaryotic differentially expressed transcripts in different treatments. Table S7. Functions of corals enriched transcript sets in different treatments. Table S8. Functions of Symbiodiniaceae enriched transcript sets in different treatments. Table S9. Functions of prokaryotic microbes enriched transcript sets in different treatments. Table S10. Detailed information of significantly correlated coral transcripts with Symbiodiniaceae physiology detected in GLMMLasso model. Table S11. Detailed information of significantly correlated prokaryotic transcripts with Symbiodiniaceae physiology detected in GLMMLasso model. Table S12. Parameters for analytical model example. Table S13. Nitrate concentration of each treatment during the 5-days experiment. Figure S1. MA plots of different comparisons (control-5, control-10, control-20, control-40) in coral (A, B, C, D), Symbiodiniaceae (E, F, G, H) and prokaryotic microbes (I, J, K, L). Figure S2. Prokaryotic community structures at phylum (A) and genus level (B) by Kraken2. Only genera with top 20 highest relative abundance were presented in the legend. Figure S3. Functions of shared transcripts in different comparisons. Representing coral (A), Symbiodiniaceae (B) and prokaryotic (C) shared transcripts, respectively. Figure S4. Functions of core transcripts in correlation networks. Representing coral (A) and Symbiodiniaceae (B) core transcripts in coral-algal network; Symbiodiniaceae (C) and prokaryotic microbial (D) core transcripts in algal-microbial network; coral (E) and prokaryotic microbial (F) core transcripts in coral-microbial network. Figure S5. Algal density (A) and photosynthetic rate (B) of larvae from different groups. Each dot in A represents a single larva. Each box in A and B represent the Q1-Q3 range in each group, and the whiskers in each box represent Q1 - 1.5SD and Q3 + 1.5SD of each group. Q1 and Q3 are the first and third quartile, and SD is the standard deviation. The line in each box represents the mean value for each group. PN and PG in B represent the net photosynthetic rate and gross photosynthetic rate, respectively. Figure S6. Location of sampling area. Star indicates the sampling and researching area, CAS-HKUST Sanya Joint Laboratory of Marine Science Research. HN, Hainan Island.
DOI: 10.6084/m9.figshare.14324554.v1
title: Peripheral Deformation and Buckling of Stainless Steel Hemispherical Shells Compressed by a Flat Plate

description: Abstract An experimental investigation was performed on stainless steel hemispherical shells under axial compression. Eight kinds of shells with radius-to-thickness ratios that range from 57.1 to 125 were designed and manufactured for this study. The shells were compressed to more than 50% of their radii by a solid flat plate. To avoid contact between the base plate and the deformed central part of the shells, most of the shells were placed on a plate with a hole in the center. Nonetheless, one type of shell was placed on a solid base plate without a hole to analyze the effect of the base plate. As per an observation of collapse modes and load-deformation shell relations, the deformation process of a hemispherical shell that is compressed by a flat plate can be divided into four stages: local flattening (Stage I), axi-symmetric inward dimpling (Stage II), non-symmetric multiple lobes (Stage III), and peripheral deformation and buckling stage (Stage IV). The present study mainly studies Stage IV, which can be categorized into peripheral compression (Stage A), peripheral buckling (Stage B), buckling expanding (Stage C), and overall collapse (Stage D).
DOI: 10.6084/m9.figshare.7508870
title: Parametric Model Method and Deployment Simulation of Inflatable Antenna Structures

description: ABSTRACT: In this paper, we develop a parametric model method and simulate the deployment mechanism of inflatable antenna structures. Different folded methods are developed for the primary members of inflatable antenna structures, which include inflatable tubes, an inflatable torus, a reflector etc. The unstressed configuration and the folded configuration of these members are modeled parametrically using the developed folded methods. A simulation software is developed for the deployment mechanism of inflatable structures by the improved spring-mass system. The driving forces in the deployment process, i.e. the gas pressure and the moment of the fold hinges, are analyzed for each member. During the development process, self-contact or collision with the membrane occurs. A rule for identifying self-contact elements is applied, and a penalty function method is developed to solve this challenging problem. Finally, the equation of motion is solved using finite difference method. The developed simulation software is validated by simulating a cylindrical inflatable tube that is folded in half, and the simulation agrees well with the experiment. The deployment mechanism of the antenna model similar to that for the Inflatable Antenna Experiment (IAE) is modeled, analyzed and estimated. The deployed configurations and the dynamic parameters of each node are obtained. The numerical simulation results show that the simulation software for the deployment mechanism can correctly predict the deployment process of inflatable antenna structures.
DOI: 10.6084/m9.figshare.22706066
title: Additional file 2 of MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions

description: Additional file 2: Table S1. Genes proximal to MORC7A-unique, MORC7B-unique, MORC7-Pol V Common, and Pol V-unique peaks.
DOI: 10.6084/m9.figshare.22706072
title: Additional file 4 of MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions

description: Additional file 4: Table S3. Expression level of LUG directly regulated genes in Ler and lug mutant.
DOI: 10.6084/m9.figshare.12752156.v1
title: Additional file 10 of Comparative transcriptome analysis reveals ecological adaption of cold tolerance in northward invasion of Alternanthera philoxeroides

description: Additional file 10: Table S8. GO enrichment analysis for the total number of DEGs.
DOI: 10.35111/mb8z-6p26
title: IARPA Babel Turkish Language Pack IARPA-babel105b-v0.5

description: <h3>Introduction</h3><br>
<p>IARPA Babel Turkish Language Pack IARPA-babel105b-v0.5 was developed by <a href="http://www.appen.com/">Appen</a> for the IARPA (Intelligence Advanced Research Projects Activity) <a href="http://www.iarpa.gov/index.php/research-programs/babel">Babel</a> program. It contains approximately 213 hours of Turkish conversational and scripted telephone speech collected in 2012 along with corresponding transcripts.</p><br>
<p>The Babel program focuses on underserved languages and seeks to develop speech recognition technology that can be rapidly applied to any human language to support keyword search performance over large amounts of recorded speech.</p><br>
<h3>Data</h3><br>
<p>The Turkish speech in this release represents that spoken in seven dialect regions in Turkey. The gender distribution among speakers is approximately equal; speakers' ages range from 16 years to 70 years. Calls were made using different telephones (e.g., mobile, landline) from a variety of environments including the street, a home or office, a public place, and inside a vehicle.</p><br>
<p>All audio data is presented as 8kHz 8-bit a-law encoded audio in sphere format. Transcripts are encoded in UTF-8. Further information about transcription methodology is contained in the documentation accompanying this release.</p><br>
<p>Evaluation data is available from <a href="http://www.nist.gov/">NIST</a> in support of <a href="http://www.nist.gov/itl/iad/mig/openkws.cfm">OpenKWS</a>.</p><br>
<h3>Updates</h3><br>
<p>None at this time.</p><br>
<h3>Samples</h3><br>
<p>Please view this <a href="desc/addenda/LDC2016S10.sph">audio sample</a> and <a href="desc/addenda/LDC2016S10.txt">transcript sample</a>.</p></br>
Portions © 2015 U.S. Government
</br>The U.S. Government acquired this data from Appen Pty Ltd, which assigned the copyright to the data to the U.S. Government.
DOI: 10.6084/m9.figshare.13109567
title: Arctic COSMO-CLM hindcast 2011

description: COSMO-CLM Russian Arctic climate dataset
DOI: 10.6084/m9.figshare.13109567.v4
title: Arctic COSMO-CLM hindcast 2011

description: COSMO-CLM Russian Arctic climate dataset
DOI: 10.6084/m9.figshare.16946354
title: Additional file 6 of High throughput sequencing of whole transcriptome and construct of ceRNA regulatory network in RD cells infected with enterovirus D68

description: Additional file 6. The whole of differentially expression genes of circRNAs
DOI: 10.6084/m9.figshare.22557706
title: Supplemental Data for "Quantifying uncertainty in sustainable biomass and production of biotic carbon in Enceladus' notional methanogenic biosphere"

description: This is simulation data for results presented in "Quantifying uncertainty in sustainable biomass and production of biotic carbon in Enceladus' notional methanogenic biosphere"; <i>JGR:Planets</i>. To exactly replicate or extend analysis of these data, these archives can be extracted and placed in the 'data' directory of NutMEG-Implementations/Enceladus2024_BiomassBiosignatures/ (exact version for this work archived on zenodo: https://doi.org/10.5281/zenodo.10647803)<b>biomass.zip</b> contains results from the individual Monte Carlo simulations to estimate steady state biomass and turnover on Enceladus per mole of H2 consumed by hypothetical methanogens per second.<b>BMTO_means_CIs.zip</b> contains means and confidence intervals extracted from the Monte Carlo simulations above, which are presented in Supplemental Tables S4-S27 in Higgins et al. 2024, <i>JGR: Planets</i>.<b>speciation.zip </b>contains raw data output from the chemical speciation calculations across temperature and bulk ocean pH-space for Enceladus seawater. See methods and supplement of Higgins et al. 2024, <i>JGR: Planets</i> for further information and limitations in this chemcal speciation model.