cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20235909.v1
title: Data for "Disrupted localized functional connectivity in schizophrenia: an updated and extended meta-analysis"

description: Neuroimaging studies have shown that schizophrenia is associated with disruption of localized resting-state functional connectivity. However, the results vary considerably, which hamper our understanding of underlying pathophysiological mechanism. Here, we performed an updated and extended meta-analysis to identify the most consistent changes in local functional connectivity measured by regional homogeneity (ReHo) in schizophrenia. Specifically, a systematic search for ReHo studies in patients with schizophrenia in PubMed, Embase, and Web of Science identified 18 studies (20 datasets) including 652 patients and 596 healthy controls. In addition, three whole-brain statistical maps of ReHo differences were calculated based on independent datasets (163 patients and 194 controls). A voxel-wise meta-analysis was then conducted to investigate ReHo difference and the relationship with clinical characteristics using the newly developed seed-based <em>d</em> mapping with permutation of subject images (SDM-PSI) meta-analytic approach. Compared with healthy controls, patients with schizophrenia showed significantly higher ReHo in the bilateral medial superior frontal gyrus, while lower ReHo in the bilateral postcentral gyrus, right precentral gyrus, and right middle occipital gyrus. The following sensitivity analyses including jackknife analysis, subgroup analysis, heterogeneity test and publication bias test demonstrated that our results were robust and highly reliable. Meta-regression analysis revealed that illness duration was negatively associated with ReHo abnormalities in the right precentral/postcentral gyrus. This comprehensive meta-analysis not only identified consistent and reliably aberrant local functional connectivity in schizophrenia but also helped to further deepen our understanding of its pathophysiology.
DOI: 10.34683/sr25
title: StoneRounds Case: SR25
title: XL Retinoschisis

description: StoneRounds Case SR25 was diagnosed with XL Retinoschisis likely caused by mutations in the gene: RS1.
DOI: 10.5517/ccdc.csd.cc28sl0p
title: CCDC 2108992: Experimental Crystal Structure Determination

description: Related Article: Malik L. Williams, Itai Schlesinger, Carolyn E. Ramirez, Robert M. Jacobberger, Paige J. Brown, Ryan M. Young, Michael R. Wasielewski|2022|J.Phys.Chem.C|126|10287|doi:10.1021/acs.jpcc.2c02298
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29yjwp
title: CCDC 2143553: Experimental Crystal Structure Determination

description: Related Article: Ruiying Ma, Hongzhou Yang, Ling Ye, Qiang Yang, Zhichuan Shi, Zhigang Zhao, Xuefeng Li|2022|Org.Lett.|24|4798|doi:10.1021/acs.orglett.2c01866
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bpbky
title: CCDC 2165460: Experimental Crystal Structure Determination

description: Related Article: Raúl Castañeda, Sergei V. Lindeman, Arcadius V. Krivoshein, Alejandro J. Metta-Magaña, Yongli Chen, Tatiana V. Timofeeva|2022|Cryst.Growth Des.|22|4592|doi:10.1021/acs.cgd.2c00509
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bpblz
title: CCDC 2165461: Experimental Crystal Structure Determination

description: Related Article: Raúl Castañeda, Sergei V. Lindeman, Arcadius V. Krivoshein, Alejandro J. Metta-Magaña, Yongli Chen, Tatiana V. Timofeeva|2022|Cryst.Growth Des.|22|4592|doi:10.1021/acs.cgd.2c00509
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bpbm0
title: CCDC 2165462: Experimental Crystal Structure Determination

description: Related Article: Raúl Castañeda, Sergei V. Lindeman, Arcadius V. Krivoshein, Alejandro J. Metta-Magaña, Yongli Chen, Tatiana V. Timofeeva|2022|Cryst.Growth Des.|22|4592|doi:10.1021/acs.cgd.2c00509
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bs0hn
title: CCDC 2168031: Experimental Crystal Structure Determination

description: Related Article: Tomohiro Kimura, Shohei Hamada, Takumi Furuta, Yoshiji Takemoto, Yusuke Kobayashi|2022|Org.Lett.|24|4835|doi:10.1021/acs.orglett.2c02054
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bs1dl
title: CCDC 2168059: Experimental Crystal Structure Determination

description: Related Article: Tomohiro Kimura, Shohei Hamada, Takumi Furuta, Yoshiji Takemoto, Yusuke Kobayashi|2022|Org.Lett.|24|4835|doi:10.1021/acs.orglett.2c02054
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bybl7
title: CCDC 2173149: Experimental Crystal Structure Determination

description: Related Article: Tomohiro Kimura, Shohei Hamada, Takumi Furuta, Yoshiji Takemoto, Yusuke Kobayashi|2022|Org.Lett.|24|4835|doi:10.1021/acs.orglett.2c02054
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20268153.v1
title: ALDH2 KO x SA RNAseq 2000 genes.xlsx

description: ALDH2 KO x SA RNAseq 2000 genes
DOI: 10.6084/m9.figshare.20268153
title: ALDH2 KO x SA RNAseq 2000 genes.xlsx

description: ALDH2 KO x SA RNAseq 2000 genes
DOI: 10.25919/3s9d-km42
title: Parkes observations for project P1156 semester 2022APRS_05

description: The discovery of a repeating fast radio burst (FRB) 20200120E localized to a globular cluster (GC) of the nearby (~3.6 Mpc) M81 galaxy challenged our current understanding of FRBs. Its location in an old stellar system and proximity to the Earth (40 times closer than any other extragalactic FRB detected) have profound implications on the origin of FRBs and the number density and luminosity of this type of source. Motivated by this discovery, we propose to search for FRBs targeting at another nearby elliptical galaxy, Centaurus A. Its relative proximity (~3.5 Mpc), combined with its richness in GCs (&gt;1200), makes Centaurus A the best target in the sky for detecting new FRB sources in GCs. Such a targeted survey will allow us to constrain the event rate and luminosity of FRBs from GCs and hence understand their contribution to the cosmological FRB rate and shed new light on the formation of neutron stars in GCs.
DOI: 10.6084/m9.figshare.20294340.v1
title: ArteW1.fasta

description: Fasta file of Arte genome
DOI: 10.6084/m9.figshare.20294340
title: ArteW1.fasta

description: Fasta file of Arte genome
DOI: 10.6084/m9.figshare.20294421
title: K-means : genes of 4 clusters

description: K-means : genes of 4 clusters
DOI: 10.6084/m9.figshare.20294421.v2
title: K-means : genes of 4 clusters

description: K-means : genes of 4 clusters
DOI: 10.6084/m9.figshare.20294421.v1
title: K-means : genes of 4 clusters

description: K-means : genes of 4 clusters
DOI: 10.34740/kaggle/dsv/3936034
title: GeoData for hacking attempts (July 2021-Aug 2022)
DOI: 10.6084/m9.figshare.20294442
title: diff_expression_all_comparison

description: diff_expression_all_comparison
DOI: 10.6084/m9.figshare.20294442.v1
title: diff_expression_all_comparison

description: diff_expression_all_comparison
DOI: 10.34740/kaggle/dsv/3936082
title: BBC News
DOI: 10.34740/kaggle/dsv/3936083
title: BBC News
DOI: 10.25919/zdhw-4n59
title: Swan Valley Loupe Time-domain Electromagnetic Pilot Study

description: A collection of time-domain electromagnetic survey data collected using the Loupe system along various transects adjacent to the Swan River. The data was collected on behalf of the Department of Water and Environmental Regulation as part of a pilot study to test the feasibility of using the Loupe system to monitor changes in electrical conductivity in a peri-urban environment.
DOI: 10.6084/m9.figshare.19673844
title: Unigenes and their annotations of Alvinocaris longirostris and Shinkaicaris leurokolos PacBio SMRT RNA-seq

description: Comparative Transcriptome Analysis Combining PacBio SMRT- and Illumina RNA-seq Provides Novel Insights into the Adaptive Evolution of Alvinocaridid Shrimps from Different Ecological Niches of Deep-Sea Hydrothermal Vent
DOI: 10.6084/m9.figshare.19673844.v1
title: Unigenes and their annotations of Alvinocaris longirostris and Shinkaicaris leurokolos PacBio SMRT RNA-seq

description: Comparative Transcriptome Analysis Combining PacBio SMRT- and Illumina RNA-seq Provides Novel Insights into the Adaptive Evolution of Alvinocaridid Shrimps from Different Ecological Niches of Deep-Sea Hydrothermal Vent
DOI: 10.6084/m9.figshare.17696150
title: gill symbiont of alvinocaridid shrimps16S rRNA gene

description: Shrimps of the family Alvinocarididae with ectosymbionts in gills are endemic species to deep sea chemosynthetic ecosystems. Among them, <i>Alvinocaris longirostris</i> and <i>Shinkaicaris leurokolos</i> occupy different ecological niches within the same hydrothermal vent in Okinawa Trough, of which <i>A. longirostris</i> inhabits on mussel beds surrounding the base of hydrothermal vents (ALHV), while <i>S. leurokolos</i> lives tightly close to the vent (SLHV). In addition, <i>A. longirostris</i> also exists in a methane seep of the South China Sea (ALMS). In this study, full-length 16S rRNA sequences of the gill symbionts of two alvinocaridid species from different chemosynthetically ecological niches were first captured by single-molecule real-time sequencing.
DOI: 10.6084/m9.figshare.20294529.v1
title: GeneLab amplicon validation test set

description: GeneLab test metagenomics output for testing validation programs
DOI: 10.34740/kaggle/ds/2331894
title: Billboard Hot top 100 ranks between 1992-2014
DOI: 10.6084/m9.figshare.20294529
title: GeneLab amplicon validation test set

description: GeneLab test metagenomics output for testing validation programs
DOI: 10.6084/m9.figshare.20294529.v2
title: GeneLab amplicon validation test set

description: GeneLab test metagenomics output for testing validation programs
DOI: 10.5281/zenodo.6825011
title: Comprehensive Context-specific Genome-scale Metabolic Models for Mus Musculus

description: Comprehensive Context-specific Genome-scale Metabolic Models for Mus Musculus. The data consists of 28 models for the combination 2 mouse strains (WT and Ob/Ob), 2 diets (WT and HFD) and 7 tissues (Aorta, Heart, Liver, Skeletal Muscle, Hippocampus, Hypothalamus and Epididymal fat).
DOI: 10.5281/zenodo.6825010
title: Comprehensive Context-specific Genome-scale Metabolic Models for Mus Musculus

description: Comprehensive Context-specific Genome-scale Metabolic Models for Mus Musculus. The data consists of 28 models for the combination 2 mouse strains (WT and Ob/Ob), 2 diets (WT and HFD) and 7 tissues (Aorta, Heart, Liver, Skeletal Muscle, Hippocampus, Hypothalamus and Epididymal fat).
DOI: 10.6084/m9.figshare.20281863.v2
title: Nickel isotopic compositions of mineral separates in Beiyan peridotites, Nickel isotopic compositions, FeO contents and Fe3+/∑Fe of nephelinites from eastern China

description: Nickel isotopic compositions of mineral separates in Beiyan peridotites determined by MC-ICP-MS. Nickel isotpoic compositions of nephelinites from eastern China determined by MC-ICP-MS; FeO of nephelinites was determined by redox titration using ammonium metavanadate to quantify the Fe<sup>3+</sup>/ΣFe.
DOI: 10.6084/m9.figshare.20281863.v1
title: Nickel isotopic compositions of mineral separates in Beiyan peridotites and nephelinites from eastern China

description: Nickel isotopic compositions of mineral separates in Beiyan peridotites and nephelinites from eastern China determined by MC-ICP-MS.
DOI: 10.6084/m9.figshare.20295189
title: DATASET_Yu-RongLiu.xlsx

description: The dataset is associated with Yu-Rong Liu et al., containing all the oringinal data showed in the figures of the main text and supporting matrials.
DOI: 10.6084/m9.figshare.20295189.v1
title: DATASET_Yu-RongLiu.xlsx

description: The dataset is associated with Yu-Rong Liu et al., containing all the oringinal data showed in the figures of the main text and supporting matrials.
DOI: 10.6084/m9.figshare.20295598
title: Additional file 1 of A primer on continuous-time modeling in educational research: an exemplary application of a continuous-time latent curve model with structured residuals (CT-LCM-SR) to PISA Data

description: Additional file 1.Supplementary R Code.
DOI: 10.6084/m9.figshare.20295598.v1
title: Additional file 1 of A primer on continuous-time modeling in educational research: an exemplary application of a continuous-time latent curve model with structured residuals (CT-LCM-SR) to PISA Data

description: Additional file 1.Supplementary R Code.
DOI: 10.6084/m9.figshare.20295625
title: Additional file 1 of Comparative phylogeny and evolutionary analysis of Dicer-like protein family in two plant monophyletic lineages

description: Additional file 1. List of the DCL protein sequences considered for this study.
DOI: 10.6084/m9.figshare.20295625.v1
title: Additional file 1 of Comparative phylogeny and evolutionary analysis of Dicer-like protein family in two plant monophyletic lineages

description: Additional file 1. List of the DCL protein sequences considered for this study.
DOI: 10.6084/m9.figshare.20295628
title: Additional file 2 of Comparative phylogeny and evolutionary analysis of Dicer-like protein family in two plant monophyletic lineages

description: Additional file 2. Multiple sequence alignment of plant DCL protein data set using Muscle with its default parameters.
DOI: 10.6084/m9.figshare.20295628.v1
title: Additional file 2 of Comparative phylogeny and evolutionary analysis of Dicer-like protein family in two plant monophyletic lineages

description: Additional file 2. Multiple sequence alignment of plant DCL protein data set using Muscle with its default parameters.
DOI: 10.6084/m9.figshare.20295640
title: Additional file 6 of Comparative phylogeny and evolutionary analysis of Dicer-like protein family in two plant monophyletic lineages

description: Additional file 6. List of functional domains predicted in the Eudicotyledons (A) and Liliopsida DCL protein sequences by querying the protein sequence in Hmmscan search tool ( https://www.ebi.ac.uk/Tools/hmmer/search/hmmscan [11];) against the Pfam database ( http://pfam.xfam.org/ ) and their characteristics.
DOI: 10.6084/m9.figshare.20295640.v1
title: Additional file 6 of Comparative phylogeny and evolutionary analysis of Dicer-like protein family in two plant monophyletic lineages

description: Additional file 6. List of functional domains predicted in the Eudicotyledons (A) and Liliopsida DCL protein sequences by querying the protein sequence in Hmmscan search tool ( https://www.ebi.ac.uk/Tools/hmmer/search/hmmscan [11];) against the Pfam database ( http://pfam.xfam.org/ ) and their characteristics.
DOI: 10.6084/m9.figshare.20295643
title: Additional file 7 of Comparative phylogeny and evolutionary analysis of Dicer-like protein family in two plant monophyletic lineages

description: Additional file 7. The predicted DCL protein structures encoded in A. thaliana and A. protothecoides in PDB file format from their string by searching the known structure in the PDB database using HHpred search tool, and creating the PDB file by MODELLER.
DOI: 10.6084/m9.figshare.20295643.v1
title: Additional file 7 of Comparative phylogeny and evolutionary analysis of Dicer-like protein family in two plant monophyletic lineages

description: Additional file 7. The predicted DCL protein structures encoded in A. thaliana and A. protothecoides in PDB file format from their string by searching the known structure in the PDB database using HHpred search tool, and creating the PDB file by MODELLER.
DOI: 10.6084/m9.figshare.20130872
title: Additional file 1 of Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks

description: Additional file 1: Table S1. Taxonomic assignation of the reads with Kraken 2. First column, taxonomic categories or taxa. Next columns, for each synganglion library (label in the first line), percentage of the reads assigned to the corresponding taxon.
DOI: 10.6084/m9.figshare.20130872.v1
title: Additional file 1 of Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks

description: Additional file 1: Table S1. Taxonomic assignation of the reads with Kraken 2. First column, taxonomic categories or taxa. Next columns, for each synganglion library (label in the first line), percentage of the reads assigned to the corresponding taxon.
DOI: 10.6084/m9.figshare.20130875
title: Additional file 2 of Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks

description: Additional file 2: Table S2. Top 20 enriched Gene Ontology terms among genes significantly down-regulated in the synganglion. Columns, GO IDs and terms for Molecular Function, Biological Process and Cellular localization; Annotated : number of transcripts associated with each GO; Significant: number of genes annotated with this term in the enriched category. Expected: expected number of genes. Weight01: level of significance of the enrichment.
DOI: 10.6084/m9.figshare.20130875.v1
title: Additional file 2 of Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks

description: Additional file 2: Table S2. Top 20 enriched Gene Ontology terms among genes significantly down-regulated in the synganglion. Columns, GO IDs and terms for Molecular Function, Biological Process and Cellular localization; Annotated : number of transcripts associated with each GO; Significant: number of genes annotated with this term in the enriched category. Expected: expected number of genes. Weight01: level of significance of the enrichment.
DOI: 10.6084/m9.figshare.20130878
title: Additional file 3 of Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks

description: Additional file 3: Table S3. Top 20 enriched Gene Ontology terms among genes significantly up-regulated in the “fed” conditions. Comparison between the “fed” and “unfed” condition, for synganglion libraries only.
DOI: 10.6084/m9.figshare.20130878.v1
title: Additional file 3 of Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks

description: Additional file 3: Table S3. Top 20 enriched Gene Ontology terms among genes significantly up-regulated in the “fed” conditions. Comparison between the “fed” and “unfed” condition, for synganglion libraries only.
DOI: 10.6084/m9.figshare.20130881.v1
title: Additional file 4 of Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks

description: Additional file 4: Table S4. Top 20 enriched Gene Ontology terms among genes significantly down-regulated in the “fed” condition. Comparison between the “fed” and “unfed” condition, for synganglion libraries only.
DOI: 10.6084/m9.figshare.20130881
title: Additional file 4 of Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks

description: Additional file 4: Table S4. Top 20 enriched Gene Ontology terms among genes significantly down-regulated in the “fed” condition. Comparison between the “fed” and “unfed” condition, for synganglion libraries only.
DOI: 10.6084/m9.figshare.20130884.v1
title: Additional file 5 of Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks

description: Additional file 5: Table S5. Lists of differentially expressed genes with their annotation and read counts for all libraries. Columns: Gene ID in the meta-transcriptome, Best BLASTX hit against the SwissProt database, Best BLASTX hit on theUniref90 database, list of GO terms associated, normalized reads counts in Fragments per Kilobase per Million reads (FPKM) for each libraries (Synganglion or Whole Body, Fed or Unfed ticks, as precised by the column title. Below each each library name, the terms «Up», «Down» or «NI» respectively indicate up-regulation, down-regulation, or that the library was not included in the statistical analysis. Sheet A (A – Syn+ genes): comparison between the synganglion and whole body libraries, n=8483 genes up-regulated in the synganglion. Sheet B (B – Syn- genes): comparison between the synganglion and whole-body libraries, n=5040 genes down-regulated in the synganglion. Sheet C (C – Fed+ genes, Syn libraries only): comparison between the synganglion of fed ticks and the synganglion of unfed ticks, genes up-regulated in fed ticks. Sheet D (D – Fed- genes , Syn libraries only): comparison between the synganglion of fed ticks and the synganglion of unfed ticks, genes down-regulated in fed ticks.