cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/zk5zgxns6d.1
title: Dynamic Tax Rate Optimisation of Environmental Protection Tax and Urban Industrial Pollution Abatement

description: This study focuses on the impact mechanism of environmental tax reform on environmental governance. The research hypothesis is that environmental protection taxes can effectively reduce industrial pollution emissions through pathways such as the diffusion of clean technologies and industrial structure upgrading, and there exists an optimal tax rate range to coordinate environmental regulation and economic development. The study integrates multi-source heterogeneous data, including industry classification standards from the Ministry of Ecology and Environment, environmental disclosure reports of listed companies, and regional statistical yearbooks. Interpolation methods are applied to handle discrete missing values, and observation units in Hong Kong, Macau, and Taiwan are excluded following the principle of regional data availability, constructing an environmental governance database covering major industrial cities across China. A three-sector dynamic stochastic general equilibrium model (DSGE) with pollution dynamic feedback is constructed to solve the Pareto-efficient tax rate range. Using a sample of 297 Chinese cities from 2014 to 2021, the difference-in-differences (DID) method is employed to evaluate the implementation effect of the Environmental Protection Tax Law of the People's Republic of China, and the optimal tax rate is calculated through the environmental governance cost allocation method. The data shows that increasing tax rates can significantly reduce industrial pollution emissions, but this effect varies significantly among cities with different levels of environmental regulation, cleanliness, innovation, and sizes. A notable finding is the institutional gap between the current actual tax rate and the optimal tax rate. The study indicates that the diffusion of clean technologies and industrial structure upgrading are the key transmission paths for environmental taxes to play a role in emission reduction. In the future, potential emission reduction dividends need to be released through stepwise dynamic tax rate adjustments. The data of this study provides a full-chain solution from theoretical threshold derivation and empirical effect testing to policy adaptation suggestions for the optimization of the environmental tax system, which helps to deeply understand the role mechanism of environmental taxes in environmental governance.
DOI: 10.6084/m9.figshare.21787232.v1
title: room-temperature-and-hygrometer

description: Ambient temperature and hygrometry data in bedroom, collected using a Switchbot Meter device (not Plus) combined with a Switchbot Mini Hub for data storage, from 2021-08-11 to 2022-12-28. <br> Data collection was temporarily discontinued between 2022-04-19 and 2022-09-24 because the subject moved away to another place, and hence the data before and after these dates correspond to two different places, but still in the main bedroom. <br> Note however that the subject was obviously not always living in this room, nor even slept systematically in this room, although he slept in it the vast majority of the time.
DOI: 10.6084/m9.figshare.9273203.v1
title: GP33_B30.nwb

description: The enclosed data is collected using a high-density 256-channel electrocorticography array implanted in a human patient during treatment for epilepsy. The subjects are reading aloud consonant-vowel syllables from a list. The data was collected by Dr. Edward Chang at the University of California, San Francisco, and curated by Ben Dichter.<br>Data is organized by subject ID, and each file is a continuous recording session in Neurodata Without Borders: Neurophysiology (NWB:N) 2.0 format. Voltage traces are included for each of the recorded 256 channels. Microphone signal was recorded at the time but is removed for HIPAA compliance. Detailed hand-marked annotations are provided which mark what syllable was said, and the times of the start, consonant-vowel transition, and end of each syllable. A rest-period time is also included when the subject was silent, which can be used as a baseline. Hand-marked anatomical labels are included for electrodes in the relevant brain regions. All dates have been removed for HIPAA compliance and replaced with Jan 1, 1900.
DOI: 10.6084/m9.figshare.3851481.v2
title: Primary and Supplementary Figures

description: Figures published in the study by Vineis et al, 2016.
DOI: 10.6084/m9.figshare.24155187.v1
title: Acceleration data (subject 1-50)

description: This is the acceleration dataset for subjects 1-50.
DOI: 10.6084/m9.figshare.11600592.v1
title: DATA_SUPPORTING_Lanuza_et_al_ECOSPHERE_2020.txt

description: Data supporting the article Assessing intraspecific trait variability during seedling establishment to improve restoration of tropical dry forests by Oscar R. Lanuza, Josep M. Espelta, Josep Peñuelas & Guille Peguero, to be published at Ecosphere during 2020
DOI: 10.6084/m9.figshare.24270577.v4
title: Data for "Submesoscale vertical heat transport at the Kuroshio Extension: Characteristics and mechanisms" By Chen et al. Submitted to Journal of Geophysical Research: Oceans.

description: This repository contains the code and data for the study of "Submesoscale vertical heat transport at the Kuroshio Extension: Characteristics and mechanisms”By Chen et al. Submitted to Journal of Geophysical Research: Oceans.Specifically, this repository contains the following items:(1) The code needed for spatial filtering to extract submesoscale component from https://www.mathworks.com/matlabcentral/fileexchange/41961-nanconv.(2) The code needed for assessing thecausality from multiple variables to submesoscale vertical heat transport. The original codes can be downloaded from http://www.ncoads.cn/article/show/67.aspx.(3) Data to produce the figures of the study.
DOI: 10.6084/m9.figshare.27184548.v2
title: <b>energy, carbon and tourism markets</b>

description: Energy; Carbon Market; Tourism Stocks
DOI: 10.6084/m9.figshare.28067273.v1
title: Poland- BRI 2024.nvpx

description: The paper analyzes the official cognition of Poland in respect to China’s Belt and Road Initiative (BRI), using the content analysis approach in order to underline hidden cognition, narratives, and their evolution in time in the context of U.S.-China competition. Against this background, this research tries to fill a serious gap in the literature by providing a systematic and in-depth content analysis of Poland’s official position on the BRI. By building a corpus of official government documents, reports, and media statements, this study applies a mixture of qualitative and quantitative methods, including corpus content analysis, word frequency analysis, and cognitive frame analysis, among others. The evidence produced in the paper clearly demonstrates that the main axis for the Polish predominantly optimistic cognition of BRI refers to questions of economic and infrastructural opportunities, while gaining more geopolitical caution driven both by the U.S.-China competition and regional security dynamics. It is indicative of the ability of Poland to balance economic growth with national strategic objectives and helps shed light on broader challenges and opportunities at the intersection of global trade and strategic competition. The contribution of this paper thus provides important lessons that can be learned in understanding how medium-sized geopolitical actors navigate global power dynamics.
DOI: 10.6084/m9.figshare.19499639.v1
title: patches and local annotations, slide 032, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.28759616.v1
title: Effects of Composite Organic Acid Salt on Growth, Antioxidant Activity, and Aflatoxin Gene Expression in <i>Aspergillus flavu</i><i>s</i>

description: This study explored the inhibitory effects of five organic acid salts, including sodium diacetate, sodium dehydroacetate, and sodium benzoate, as well as their combined application, on <i>Aspergillus flavus</i>. The investigation assessed the impact of these compounds on mycelial growth, cellular integrity, the redox system, and the expression of key genes involved in toxin synthesis in <i>Aspergillus flavus</i>.
DOI: 10.6084/m9.figshare.17212010.v1
title: Supplementary Material for: Immunohistochemical and Transcriptional Analysis of SARS-CoV-2 Entry Factors and Renin-Angiotensin-Aldosterone System Components in Lethal COVID-19

description: <b><i>Introduction:</i></b> Since angiotensin converting enzyme-2 (ACE2) was discovered as an essential entry factor of SARS-CoV-2 (severe acute respiratory syndrome coronavirus-2), there has been conflicting evidence regarding the role of renin-angiotensin-aldosterone system (RAAS) in COVID-19. This study elucidates pulmonary expression patterns SARS-CoV-2 entry factors (ACE2 and transmembrane protease serine subtype 2, TMPRSS2) and RAAS components in lethal COVID-19. <b><i>Methods:</i></b> Lung tissue from COVID-19 autopsies (<i>n</i> = 27) and controls (<i>n</i> = 23) underwent immunohistochemical staining for RAAS components (angiotensin receptors 1 and 2, ACE2 and Mas-receptor) and bradykinin receptors 1 and 2. Staining of individual cellular populations (alveolar pneumocytes [ALV], desquamated cells [DES] and endothelium [END]) was measured by a binary scale (positive/negative). SARS-CoV-2 was detected using immunohistochemistry against nucleocapsid protein, <i>in-situ</i> hybridization and quantitative reverse transcriptase polymerase chain reaction. Gene expression profiling for <i>ACE2, ACE</i> and <i>TMPRSS2</i> was performed. <b><i>Results:</i></b> Subtle differences were observed when comparing COVID-19 patients and controls not reaching statistical significance, such as a higher incidence of ACE2-positivity in END (52% vs. 39%) but lower positivity in ALVs (63% vs. 70%) and an overall downregulation of <i>ACE2</i> gene expression (0.25 vs. 0.55). However, COVID-19 patients with RAAS inhibitor (RAASi) intake had significantly shorter hospitalization times (5 vs. 12 days), higher viral loads (57,517 vs. 15,980/10<sup>6</sup> RNase P-gene copies) and decreased <i>ACE/ACE2</i>-expression ratios (4.58 vs. 11.07) than patients without. <i>TMPRSS2</i> expression was significantly (1.76-fold) higher in COVID-19 patients than controls. <b><i>Conclusion:</i></b> Our study delineates the heterogeneous expression patterns of RAAS components in the lungs, which vary amongst cellular populations, and implies that COVID-19 patients with RAASi-intake present with a more rapid disease progression, although this requires further investigation.
DOI: 10.6084/m9.figshare.3550236.v1
title: Appendix A. Detailed description of data and covariates used for wombling.

description: Detailed description of data and covariates used for wombling.
DOI: 10.6084/m9.figshare.c.3624998_d6.v1
title: Additional file 1: Table S1. of Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling

description: Cross-reactive probes on the EPIC array. Tabulated counts per probe of potentially cross-reactive regions (with â Ľ 47 base pair homology). (CSV 97 kb)
DOI: 10.6084/m9.figshare.c.3924832_d5.v1
title: Additional file 5: Table S4. of Analysis of near infrared spectra for age-grading of wild populations of Anopheles gambiae

description: Full listing of ITS1â  3 Blood-fed status, metadata, and spectral data. Each ITS is listed on a new tab of the .xlsx file. Abbreviations: BF, blood-fed; PBF, partially blood-fed; NBF, non-blood-fed; Loc, location and trapping method; Sporo: sporozoite (nulliparous with value of 1, positive with 2; for ITS3 nulliparous mosquitoes have a value of 1, parous value of 2). (XLSX 5810 kb)
DOI: 10.6084/m9.figshare.22578496.v1
title: LapRKM-RKM.zip

description: DNA-binding proteins (DBPs) have generated focused attention in academia. So, it is essential to predict DNA-binding proteins more accurately and efficiently.
DOI: 10.6084/m9.figshare.23683395.v1
title: Selective logging destabilizes the functioning and composition of forest ecosystems at multiple spatial scales

description: Selective logging is one of the most prevalent land uses of forests worldwide, affecting biodiversity and ecosystem functioning. However, the effect of selective logging on the dual nature of temporal stability, and the scale dependence of this effect, remain to be elucidated. By conducting several decade-long experiments in temperate forest ecosystems, we tested the effects of selective logging on aggregate and compositional stability at multiple spatial scales. As expected, forest ecosystem stability at larger spatial scales was enhanced both by the stability of local scales (i.e. α stability) and asynchronous dynamics among local communities (i.e. spatial asynchrony). We found that the negative effects of selective logging on both facets of forest stability propagated from local to larger spatial scales due to reduced α stability and the biological insurance effects of α diversity. However, both spatial aggregate and compositional asynchrony were not affected by selective logging. Interestingly, despite the selective logging, α diversity still provided biological insurance effects for maintaining aggregate and compositional stability. Our results imply that selective logging may destabilize the aggregate ecosystem functioning and species composition of forest ecosystems at local and larger spatial scales. To our knowledge, this study provides the first evidence of the scale dependence of aggregate and compositional stability of forest ecosystems in response to selective logging. Our findings suggest that forest management should avoid excessive selective logging and strive to protect forest diversity to safeguard the sustainability of the functioning and composition of natural forest ecosystems at multiple spatial scales.
DOI: 10.6084/m9.figshare.5929516.v1
title: Potential of mid-infrared spectroscopy as a non-invasive diagnostic test for endometrial or ovarian cancer in urine

description: ATR-FTIR spectroscopy has been used to analyse urine samples from women with endometrial (n=10) and ovarian cancer (n=10), as well as from healthy individuals (n=10). <br><br>After collection, the raw spectra need to be pre-processed in order to account for inconsistencies relating to the experimental procedure and spectral acquisition. Pre-processing and computational analysis of the data was performed using the PLS Toolbox version 7.9.3 (Eigenvector Research, Inc., Manson, USA) and an in-house developed IRootLab toolbox (http://trevisanj.github.io/irootlab/).<br>
DOI: 10.6084/m9.figshare.13487382.v1
title: Recycled calcium carbonate may be an efficient oxidation agent in the Earth’s deep upper mantle

description: <b>Calcium carbonate transported by subducting slabs could explain elevated ferric iron content in the upper mantle through redox reactions with iron-rich garnet and graphite as products, according to high-pressure, high-temperature experiments</b>
DOI: 10.6084/m9.figshare.9639194.v1
title: Materials

description: Materials used in the study.
DOI: 10.6084/m9.figshare.24072441.v2
title: Poor pregnancy outcome among tribal women with sickle cell disease

description: Poor pregnancy outcome among tribal women with sickle cell disease
DOI: 10.6084/m9.figshare.8105027.v6
title: Full length sequence and classification for circRNAs

description: Here, the full length circRNA sequences and circRNA classification are given for the circRNAs downloaded from circbase, circRNAdb and plantcircbase database.The details for the annotation file and the reference genome are as follows: 1. <b>circbase and circRNAdb</b> The annotation file is downloaded from circRNAdb (http://202.195.183.4:8000/circrnadb/resources.php) and the reference genome hg19 is downloaded from UCSC (http://hgdownload.soe.ucsc.edu/downloads.html#human). 2. <b>Arabidopsis thaliana</b> The reference genome and annotation version TAIR10.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 3. <b>Poncirus trifoliata </b> The reference genome and annotation version Citrus_clementina_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant 4. <b>Glycine max</b> The reference genome and annotation version Glycine_max_v2.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 5. <b>Gossypium arboreum</b> The reference genome and annotation version Gossypium_arboreum_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant/ 6. <b>Gossypium hirsutum</b> The reference genome and annotation version NBI_Gossypium_hirsutum_v1.1 are downloaded from https://www.cottongen.org/data/download/genome_NBI_AD1 7. <b>Gossypium raimondii</b> The reference genome and annotation version Graimondii_221 are downloaded from ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Graimondii/ 8. <b>Hordeum vulgare</b> The reference genome and annotation version Hv_IBSC_PGSB_v2.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 9. <b>Oryza sativa</b> The reference genome and annotation version IRGSP-1.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 10. <b>Solanum lycopersicum</b> The reference genome and annotation version SL2.50.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 11. <b>Solanum tuberosum</b> The reference genome and annotation version SolTub_3.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 12. <b>Triticum aestivum</b> The reference genome and annotation version IWGSC1.0+popseq.29 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-29/ 13. <b>Zea mays</b> The reference genome and annotation version AGPv4.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/
DOI: 10.6084/m9.figshare.24131760.v1
title: Supplementary Material for: Plasma MicroRNAs related to metabolic syndrome in Mexican women

description: Introduction: The metabolic syndrome (MetS) is a cluster of abnormalities related to cardiovascular disease (CVD). Circulating miRNAs (c-miRNAs) are non-coding RNAs associated with different phenotypes, some of them integrating the MetS. The aim of the study is to compare the c-miRNAs profile in plasma between women with MetS and controls, and explore their possible association with dysregulation of metabolic pathways. Methods: The study was conducted in two phases. At the screening phase, miRNA composition in fasting plasma was compared between 8 participants with MetS and 10 healthy controls, using microarray technology. The validation phase included the analysis by qRT-PCR of 10 selected c-miRNAs in an independent sample (n=29). Results: We found 21 c-miRNAs differentially expressed between cases and controls. The concentration in plasma of the c-miRNAs hsa-miR-1260a, hsa-miR-4514 and hsa-miR-4687-5p were also correlated with risk factors for CVD. Differences of hsa-miR-1260a between cases and controls were validated using qRT-PCR. (Fold-change= 7.0; P= 0.00289). Conclusion: The signature of plasma c-miRNA differed between women with MetS and controls. The identified miRNAs regulate pathways related to the MetS such as insulin resistance and adipokine activity. The role of c-miR-1260a in the MetS remains to be elucidated.
DOI: 10.6084/m9.figshare.25608309.v1
title: Identifying differentially expressed genes between two different sequencing platforms or smoking status

description: (A) The result of dimensionally reducing the expression levels of all quantified genes using the multi-dimensional scaling method. (B) Investigation of types of differentially expressed genes in two sequencing platforms. The RNA type used information described in Ensembl biomart. DEGs identified between the two sequencing platforms were determined at a 5% significance level after FDR adjustment. (C) Top 8 genes whose expression levels significantly change depending on current smoking status.
DOI: 10.6084/m9.figshare.c.3628763_d5.v1
title: Additional file 1: Table S1. of High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs

description: Tissue differential abundances of miRNAs previously validated for cassava in miRBase 21.0. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.11511219.v2
title: Analyses.R

description: Chi-square test and logistic regression model in the study.
DOI: 10.6084/m9.figshare.12387122.v5
title: Network Analysis of Internal Migration in Austria - Supplementary material

description: Supplementary material for the manuscript: "Network Analysis of Internal Migration in Austria". Contains network analysis node and structural indicators, and link weight estimation models data and calculations.
DOI: 10.6084/m9.figshare.28490288.v1
title: Genome annotation information of <b><i>Megoura crassicauda</i></b>

description: This is an annotation of the <b><i>Megoura crassicauda</i></b> genome. In this project, the proteins of <b><i>Megoura crassicauda</i></b> were annotated, and the location of each gene on the chromosome was also analyzed, which is a complement to the genome
DOI: 10.6084/m9.figshare.21781676.v1
title: Supplementary Material for: Molecular diversity of neuron types in the salamander amygdala and implications for amygdalar evolution

description: The amygdala is a complex brain structure in the vertebrate telencephalon, essential for regulating social behaviors, emotions and (social) cognition. In contrast to the vast majority of neuron types described in the many nuclei of the mammalian amygdala, little is known about the neuronal diversity in non-mammals, making reconstruction of its evolution particularly difficult. Here, we characterize glutamatergic neuron types in the amygdala of the urodele amphibian Pleurodeles waltl. Our single-cell RNA sequencing data indicate the existence of at least ten distinct types and subtypes of glutamatergic neurons in the salamander amygdala. These neuron types are molecularly distinct from neurons in the ventral pallium, suggesting that the pallial amygdala and the ventral pallium are two separate areas in the telencephalon. In situ hybridization for marker genes indicates that amygdalar glutamatergic neuron types are located in three major subdivisions: the lateral amygdala, the medial amygdala, and a newly-defined area demarcated by high expression of the transcription factor Sim1. The gene expression profiles of these neuron types suggest similarities with specific neurons in the sauropsid and mammalian amygdala. In particular, we identify Sim1+ and Sim1+ Otp+ expressing neuron types, potentially homologous to the mammalian nucleus of the lateral olfactory tract (NLOT) and to hypothalamic-derived neurons of the medial amygdala, respectively. Taken together, our results reveal a surprising diversity of glutamatergic neuron types in the amygdala of salamanders, despite the anatomical simplicity of their brain. These results offer new insights on the cellular and anatomical complexity of the amygdala in tetrapod ancestors.