cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/2mjtg-kgy95
title: Hn in 5% CO2

description: H. neapolitanus cell h4 in 5% CO2
description: <strong>Tilt Series Date:</strong> 2007-09-20</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in 5% CO2</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-4/rawdata/</p>Hn0h_h4_180e12um22K_20sept07.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-4/rawdata/Hn0h_h4_180e12um22K_20sept07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hn0h_h4_180e12um22K_20sept07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 381.9 MB  
        
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        Hn0h_h4_180e12um22K_20sept07_bin2_s81_needlePi.tif,  821.2 kB  
        
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        > <i class="download icon"></i> Download </a></p>

        Hn0h_h4_180e12um22K_20sept07_bin2_s90_cbxy1_darkdens.tif,  821.2 kB  
        
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        > <i class="download icon"></i> Download </a></p>

        Hn0h_h4_180e12um22K_20sept07_bin2_5ave_rec.mov,  file associated to 3D Image #4024, 13.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9rqba-axe67
title: FzlA o/e

description: Raw data files of FzlA o/e
description: <strong>Tilt Series Date:</strong> 2008-12-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
  FzlAoebx50712010834K200e002.jpg: low mag
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-12-01-3/rawdata/</p>FzlAoebx50712010834K200e002.st,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        FzlAoebx50712010834K200e0021k.rec,  Reconstruction (Pixel Size 1.288 nm), 344.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        FzlAoebx50712010834K200e0021k_full.rec,  Reconstruction (Pixel Size 1.288 nm), 981.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        dbFzlAoebx50712010834K200e0021k.rec.mrc,  Reconstruction (Pixel Size 1.288 nm), 344.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        FzlAoebx50712010834K200e002.tif,  8.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.bwzmua
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032649-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mktyjy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032650-250811113504898/datasets/export for details.
DOI: 10.22002/a5vnd-xme64
title: Thiomicrospira crunogena

description: T. crunogena cell h12
description: <strong>Tilt Series Date:</strong> 2007-11-19</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Hydrogenovibrio crunogenus</p>
<strong>Strain:</strong> XCL-2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -13.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
  civ2007-11-19-9_slicer4612.jpg: Chemoreceptor civ2007-11-19-9_slicer4613.jpg: Flagellar motor civ2007-11-19-9_slicer4615.jpg: Unknown comb civ2007-11-19-9_slicer4616.jpg: Carboxysome
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-19-9/rawdata/</p>Tc_h12_200e13um18K_19nov07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-19-9/rawdata/Tc_h12_200e13um18K_19nov07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Tc_h12_200e13um18K_19nov07_crop_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 107.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Tc_h12_200e13um18K_19nov07_crop_bin2_s78.tif,  1.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Tc_h12_200e13um18K_19nov07_bin2ave5rec.mov,  file associated to 3D Image #4146, 29.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        civ2007-11-19-9_slicer19163.png,  ? .  -andrew, 107.7 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/civ2007-11-19-9_slicer19163.png"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.jhqa94
title: Occurrence Download

description: A dataset containing 18353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18353 records from 721 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032651-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/m6th2-xec58
title: Hn under limiting CO2 for 1 hr

description: H. neapolitanus cell h6 under limiting CO2 for 1 hourKeywords: carboxysomes, internal granules, comb-like structures
description: <strong>Tilt Series Date:</strong> 2007-09-21</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth under limiting CO2 for 1 hour</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-21-11/rawdata/</p>Hn1h_h6_180e12um18K_21sept07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-21-11/rawdata/Hn1h_h6_180e12um18K_21sept07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hn1h_h6_180e12um18K_21sept07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 509.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Hn1h_h6_180e12um18K_21sept07_bin2_s85_needlePi.tif,  1.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-21-11/file_2281/Hn1h_h6_180e12um18K_21sept07_bin2_s85_needlePi.tif"
        > <i class="download icon"></i> Download </a></p>

        Hn1h_h6_180e12um18K_21sept07_bin2_s79_cbxy_darkdens.tif,  1.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Hn1h_h6_180e12um18K_21sept07_bin2_5ave_rec.mov,  file associated to 3D Image #4220, 16.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.xf6swh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tucanoichthys tucano)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032652-250811113504898/datasets/export for details.
DOI: 10.22002/1y6wa-p6f32
title: 1003_deletion w/o iron

description: Raw data files of 1003_deletion w/o iron
description: <strong>Tilt Series Date:</strong> 2009-11-12</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> Cells sent from Arash Komeili, data collected by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> (Could be) Stationary phase</p>
<strong>Sample Preparation:</strong> Quantifoil R2/1 or R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-12-21/rawdata/</p>09nov12a_mamknofe_021.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-12-21/rawdata/09nov12a_mamknofe_021.mrc"
        > <i class="download icon"></i> Download </a></p>

        09nov12a_mamknofe_021_part.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09nov12a_mamknofe_021.tif,  910.7 kB  
        
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        > <i class="download icon"></i> Download </a></p>

        09nov12a_mamknofe_021a.tif,  58.0 kB  
        
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        09nov12a_mamknofe_021b.tif,  225.3 kB  
        
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        09nov12a_mamknofe_021c.tif,  985.7 kB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/he0n6-djn75
title: Agro C58 22C liq_pl

description: Agrobacterium tumefaciens C58
description: <strong>Tilt Series Date:</strong> 2014-07-14</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski wild type cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown at 22C on plates then recovered in liquid for 4 hours</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-4/rawdata/</p>Agro_c58_22C_pl_liq10004.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        Agro_c58_22C_pl_liq10004_full.rec,  Reconstruction (Pixel Size 0.0 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        slicer004.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-4/file_11601/slicer004.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer005.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-4/file_11602/slicer005.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer006.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-4/file_11603/slicer006.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer007.tif,  2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-14-4/file_11604/slicer007.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dpsw8-0jm34
title: Agrobacterium tumefaciens

description: Agro C58
description: <strong>Tilt Series Date:</strong> 2013-10-16</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown on solid medium and manually blotted</p>
<strong>Sample Preparation:</strong> Manual blot</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-16-38/rawdata/</p>c58_home_2050001.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-16-38/rawdata/c58_home_2050001.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_home_2050001_full.rec,  Reconstruction (Pixel Size 0.0 nm), 685.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-16-38/3dimage_48990/c58_home_2050001_full.rec"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  2.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-16-38/file_10790/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  2.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-16-38/file_10791/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer002.tif,  2.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-16-38/file_10792/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer003.tif,  2.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-16-38/file_10793/slicer003.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xvh2t-amt17
title: Agrobacterium C58 25C plate liq

description: C58 wild type
description: <strong>Tilt Series Date:</strong> 2014-05-30</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown at 25 on plates for 2 days then recovered in liquid for 5 h</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
  etl2014-05-30-25_slicer6527.jpg: Flat vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-05-30-25/rawdata/</p>c58_25_pl_liq0010.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        c58_25_pl_liq0010.rec,  Reconstruction (Pixel Size 0.0 nm), 299.3 MB  
        
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        c58_25_pl_liq0010_full.rec,  Reconstruction (Pixel Size 0.0 nm), 598.7 MB  
        
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        slicer000.tif,  2.8 MB  
        
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        slicer001.tif,  2.8 MB  
        
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        slicer002.tif,  2.8 MB  
        
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