DOI: 10.5061/dryad.ffbg79d6g
title: Data from: Analysis of genomic data leads to an improved understanding of the phylogeny and biogeography of yellow bats

description: Genomic dataset associated with the Decker et al. manuscript titled
 "Analysis of genomic data leads to an improved understanding of the
 phylogeny and biogeography of yellow bats". We provide multiple fully
 assembled and filtered datasets that were used for various phylogenetic
 and population genetic analyses. The data represent reduced representation
 genomic data collected using genotyping-by-sequencing methods with the
 restriction enzyme PstI. The GBS libraries were sequenced at the Ohio
 State University Comprehensive Cancer Center Shared Genomics Research
 laboratory as eith 100bp single-end or 150bp-paired end reads on an
 Illumina NextSeq 2000. Reads were trimmed with Trimmomatic and processed
 using the iPyrad pipeline. Our datasets contain multiple species of yellow
 bats or separate assemblies for each species. Metadata for each dataset is
 available.
description: # Data from: Analysis of genomic data leads to an improved understanding
 of the phylogeny and biogeography of yellow bats Dataset DOI:
 [10.5061/dryad.ffbg79d6g](10.5061/dryad.ffbg79d6g) ## Description of the
 data and file structure We provide multiple fully assembled and filtered
 datasets that were used for various phylogenetic and population genetic
 analyses. The data represent reduced representation genomic data collected
 using genotyping-by-sequencing methods with the restriction enzyme PstI.
 The GBS libraries were sequenced at the Ohio State University
 Comprehensive Cancer Center Shared Genomics Research laboratory as eith
 100bp single-end or 150bp-paired end reads on an Illumina NextSeq 2000.
 Reads were trimmed with Trimmomatic and processed using the iPyrad
 pipeline. Our datasets contain multiple species of yellow bats or separate
 assemblies for each species. Metadata for each dataset is available in the
 SD2 of the journal publication.  Samples are named based on collection
 code, collection specimen catalog number, abbreviated species name, and
 locality. For example: OSUM-M11202-Lbor-Ohio An *L. borealis* collected in
 Ohio is held by the Ohio State University Museum of Biological Diversity
 (OSUM) and is assigned the catalog number: OSUM-M11202. ### Files and
 variables #### File: Full_Lasiurus.nex **Description:** Nexus file for the
 Full Lasiurus dataset used for IQTree and HyDe analysis. Contains 3494
 loci for 125 specimens of *Lasiurus ega*, *L. xanthinus*, *L.
 intermedius*, *L. insularis*, *L. borealis*, and *L. cinereus*. #### File:
 Ega. nex **Description:** Nexus file for 44 Lasiurus ega used for
 ADMIXTURE analysis. Contains 33422 loci.  #### File: Intermedius.nex
 **Description:** Nexus file for 40 *Lasiurus intermedius* used for
 ADMIXTURE analysis. Contains 49286 loci. #### File: Xanthinus.nex
 **Description:** Nexus file for 33 *Lasiurus xanthinus* used for ADMIXTURE
 analysis. Contains 3545 loci. #### File: Subsampled_forBEAST.nex
 **Description:** Nexus file for 70 specimens of *Lasiurus ega*, *L.
 xanthinus*, *L. intermedius*, *L. insularis*, *L. borealis*, and *L.
 cinereus*. Contains 2964 loci used for BEAST divergence time estimation.
 #### File: Subsampled_Lasiurus.nex **Description:** Nexus file for 71
 specimens of *Lasiurus ega*, *L. intermedius*, *L. xanthinus*, *L.
 insularis*, and *L. borealis*. Contains 2902 loci used for tree estimation
 with SVDQuartets. #### File: Intermedius_Ega.nex **Description:** Nexus
 file for 84 specimens of *Lasiurus intermedius* and *L. ega* used for
 ADMIXTURE analysis. Contains 35090 loci.