cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12629398
title: Additional file 4 of Outcome reporting recommendations for clinical trial protocols and reports: a scoping review

description: Additional file 4. Comparison of item content with SPIRIT 2013 and CONSORT 2010 and the number of documents identified containing a trial outcome reporting recommendation supporting each of item, by the reported application of the recommendations to specific outcomes or trial types.
DOI: 10.6084/m9.figshare.12629394
title: Additional file 3 of Optimisation of medications used in residential aged care facilities: a systematic review and meta-analysis of randomised controlled trials

description: Additional file 3 Funnel plots (pdf). Figure S1. Medication appropriateness funnel plot (10studies). Figure S2. Medication appropriateness funnel plot (2 studies). Figure S3. Hospital admission funnel plot. Figure S4. Mortality funnel plot. Figure S5. Falls funnel plot. Figure S6. Quality of life (QoL) funnel plot. Figure S7. Behavioural and Psychological Symptoms of Dementia (BPSD) funnel plot. Figure S8. Adverse drug events (ADEs) funnel plot. Figure S9. Cognitive function funnel plot.
DOI: 10.6084/m9.figshare.12629398.v1
title: Additional file 4 of Outcome reporting recommendations for clinical trial protocols and reports: a scoping review

description: Additional file 4. Comparison of item content with SPIRIT 2013 and CONSORT 2010 and the number of documents identified containing a trial outcome reporting recommendation supporting each of item, by the reported application of the recommendations to specific outcomes or trial types.
DOI: 10.6084/m9.figshare.12629394.v1
title: Additional file 3 of Optimisation of medications used in residential aged care facilities: a systematic review and meta-analysis of randomised controlled trials

description: Additional file 3 Funnel plots (pdf). Figure S1. Medication appropriateness funnel plot (10studies). Figure S2. Medication appropriateness funnel plot (2 studies). Figure S3. Hospital admission funnel plot. Figure S4. Mortality funnel plot. Figure S5. Falls funnel plot. Figure S6. Quality of life (QoL) funnel plot. Figure S7. Behavioural and Psychological Symptoms of Dementia (BPSD) funnel plot. Figure S8. Adverse drug events (ADEs) funnel plot. Figure S9. Cognitive function funnel plot.
DOI: 10.6084/m9.figshare.12629349
title: Additional file 1 of Design of the PROstate cancer follow-up care in Secondary and Primary hEalth Care study (PROSPEC): a randomized controlled trial to evaluate the effectiveness of primary care-based follow-up of localized prostate cancer survivors

description: Additional file 1.
DOI: 10.6084/m9.figshare.12629346
title: Additional file 1 of Genome-wide identification of methylated CpG sites in nongenital cutaneous warts

description: Additional file 1.Supplementary file. Complete processed methylation data for CpG sites.
DOI: 10.6084/m9.figshare.12629349.v1
title: Additional file 1 of Design of the PROstate cancer follow-up care in Secondary and Primary hEalth Care study (PROSPEC): a randomized controlled trial to evaluate the effectiveness of primary care-based follow-up of localized prostate cancer survivors

description: Additional file 1.
DOI: 10.6084/m9.figshare.12629346.v1
title: Additional file 1 of Genome-wide identification of methylated CpG sites in nongenital cutaneous warts

description: Additional file 1.Supplementary file. Complete processed methylation data for CpG sites.
DOI: 10.6084/m9.figshare.12629323
title: Additional file 2 of High level MYCN amplification and distinct methylation signature define an aggressive subtype of spinal cord ependymoma

description: Additional file 2 : Table S2. Genomic alterations detected by NGS in MYCN amplified SP-EPN cases.
DOI: 10.6084/m9.figshare.12629326
title: Additional file 3 of High level MYCN amplification and distinct methylation signature define an aggressive subtype of spinal cord ependymoma

description: Additional file 3 : Table S3. Pathological characteristics of MYCN amplified SP-EPN cases.
DOI: 10.6084/m9.figshare.12629326.v1
title: Additional file 3 of High level MYCN amplification and distinct methylation signature define an aggressive subtype of spinal cord ependymoma

description: Additional file 3 : Table S3. Pathological characteristics of MYCN amplified SP-EPN cases.
DOI: 10.6084/m9.figshare.12629323.v1
title: Additional file 2 of High level MYCN amplification and distinct methylation signature define an aggressive subtype of spinal cord ependymoma

description: Additional file 2 : Table S2. Genomic alterations detected by NGS in MYCN amplified SP-EPN cases.
DOI: 10.6084/m9.figshare.12629316
title: Additional file 2 of Improved reconstruction and comparative analysis of chromosome 12 to rectify Mis-assemblies in Gossypium arboreum

description: Additional file 2 Table S1 Genetic map construction of G. arboreum.Table S2 Chromosomes names assignment to each linkage group with respect to previous mapped markers of G. raimondii.Table S3 Chromosomes names assignment to each linkage group with respect to previous mapped markers of G. hirsutum.Table S4 Chromosomes names assignment to each linkage group with respect to previous mapped markers of G. arboreum.Table S5 Statistics for misassembled scaffolds. Table S6 Collinear blocks among the homologous chromosome 12 of different cotton species. Table S7 Orthologous gene pairs between homologous chromosomes 12 of different cotton species. Table S8 TF-related genes in reassembled G. arboreum chromosome A_A12. Table S9 TF-related genes on homologous chromosome 12 of three cotton species. (XLS 1436 kb)
DOI: 10.6084/m9.figshare.12629316.v1
title: Additional file 2 of Improved reconstruction and comparative analysis of chromosome 12 to rectify Mis-assemblies in Gossypium arboreum

description: Additional file 2 Table S1 Genetic map construction of G. arboreum.Table S2 Chromosomes names assignment to each linkage group with respect to previous mapped markers of G. raimondii.Table S3 Chromosomes names assignment to each linkage group with respect to previous mapped markers of G. hirsutum.Table S4 Chromosomes names assignment to each linkage group with respect to previous mapped markers of G. arboreum.Table S5 Statistics for misassembled scaffolds. Table S6 Collinear blocks among the homologous chromosome 12 of different cotton species. Table S7 Orthologous gene pairs between homologous chromosomes 12 of different cotton species. Table S8 TF-related genes in reassembled G. arboreum chromosome A_A12. Table S9 TF-related genes on homologous chromosome 12 of three cotton species. (XLS 1436 kb)
DOI: 10.6084/m9.figshare.12629305
title: Additional file 3 of Population structure, genetic diversity and pathotypes of Streptococcus suis isolated during the last 13 years from diseased pigs in Switzerland

description: Additional file 3. Distribution of porcineS. suisisolates in relation to sequence type and clonal complex.
DOI: 10.6084/m9.figshare.12629305.v1
title: Additional file 3 of Population structure, genetic diversity and pathotypes of Streptococcus suis isolated during the last 13 years from diseased pigs in Switzerland

description: Additional file 3. Distribution of porcineS. suisisolates in relation to sequence type and clonal complex.
DOI: 10.6084/m9.figshare.12629302
title: Additional file 2 of Population structure, genetic diversity and pathotypes of Streptococcus suis isolated during the last 13 years from diseased pigs in Switzerland

description: Additional file 2. Clinical data, genotyping, and determination of virulence markers of Swiss porcineS. suisisolates (n = 88).
DOI: 10.6084/m9.figshare.12629302.v1
title: Additional file 2 of Population structure, genetic diversity and pathotypes of Streptococcus suis isolated during the last 13 years from diseased pigs in Switzerland

description: Additional file 2. Clinical data, genotyping, and determination of virulence markers of Swiss porcineS. suisisolates (n = 88).
DOI: 10.6084/m9.figshare.12629299
title: Additional file 1 of Population structure, genetic diversity and pathotypes of Streptococcus suis isolated during the last 13 years from diseased pigs in Switzerland

description: Additional file 1. Capsular type distribution among SwissS. suisisolates. Number of isolates in relation to capsular type is indicated. NT = nontypeable due to no successful capsular typing by multiplex PCR.
DOI: 10.6084/m9.figshare.12629299.v1
title: Additional file 1 of Population structure, genetic diversity and pathotypes of Streptococcus suis isolated during the last 13 years from diseased pigs in Switzerland

description: Additional file 1. Capsular type distribution among SwissS. suisisolates. Number of isolates in relation to capsular type is indicated. NT = nontypeable due to no successful capsular typing by multiplex PCR.
DOI: 10.6084/m9.figshare.12629290
title: Additional file 6 of Comparative analysis of single-cell transcriptomics in human and zebrafish oocytes

description: Additional file 6: Supplementary file 5. Oocyte-specific genes that appear in the list of genes described by the quantile mapping data matrices (Fig. 3), which were summarizied in Supplementary file 2.
DOI: 10.6084/m9.figshare.12629287
title: Additional file 5 of Comparative analysis of single-cell transcriptomics in human and zebrafish oocytes

description: Additional file 5: Supplementary file 4. Lists of highly expressed genes in the three data sets (H1, H2, ZF) and statistically significantly overrepresented Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, and Gene Ontology (GO) Biological Process (BP), Molecular Function (MF), and Cellular Component (CC) categories based on Database for Annotation, Visualization and Integrated Discovery (DAVID v6.8) analysis. DAVID analysis is done separately for the three highly expressed gene lists and a comparative analysis of these individual results are presented.
DOI: 10.6084/m9.figshare.12629284
title: Additional file 4 of Comparative analysis of single-cell transcriptomics in human and zebrafish oocytes

description: Additional file 4: Supplementary file 3. List of 397 highly concordant and high-confident orthologous genes between human and zebrafish oocytes and the functional and systems biology analysis results for theses 397 genes. Ingenuity Pathway Analysis (IPA) results show the list of significant canonical pathways, biological/toxicological functions, upstream regulators, regulator effects and gene interaction networks. EpiFactors database analysis identifies the genes among the 397 that have been shown to be involved in epigenetic regulation along with their targets.
DOI: 10.6084/m9.figshare.12629278
title: Additional file 2 of Comparative analysis of single-cell transcriptomics in human and zebrafish oocytes

description: Additional file 2: Supplementary file 1. Transcripts per million (TPM) values and distribution for all nine samples in the three data sets (H1, H2, ZF) with respect to gene types.
DOI: 10.6084/m9.figshare.12629281
title: Additional file 3 of Comparative analysis of single-cell transcriptomics in human and zebrafish oocytes

description: Additional file 3: Supplementary file 2. List of genes described by the quantile mapping data matrices (Fig. 3). For each location (given row/column position in the quantile mapping matrix), genes are listed along with their description and TPM values in the samples involved in the mapping.
DOI: 10.6084/m9.figshare.12629287.v2
title: Additional file 5 of Comparative analysis of single-cell transcriptomics in human and zebrafish oocytes

description: Additional file 5: Supplementary file 4. Lists of highly expressed genes in the three data sets (H1, H2, ZF) and statistically significantly overrepresented Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, and Gene Ontology (GO) Biological Process (BP), Molecular Function (MF), and Cellular Component (CC) categories based on Database for Annotation, Visualization and Integrated Discovery (DAVID v6.8) analysis. DAVID analysis is done separately for the three highly expressed gene lists and a comparative analysis of these individual results are presented.
DOI: 10.6084/m9.figshare.12629290.v2
title: Additional file 6 of Comparative analysis of single-cell transcriptomics in human and zebrafish oocytes

description: Additional file 6: Supplementary file 5. Oocyte-specific genes that appear in the list of genes described by the quantile mapping data matrices (Fig. 3), which were summarizied in Supplementary file 2.
DOI: 10.6084/m9.figshare.12629290.v1
title: Additional file 6 of Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes

description: Additional file 6: Supplementary file 5. Oocyte-specific genes that appear in the list of genes described by the quantile mapping data matrices (Fig. 3), which were summarizied in Supplementary file 2.
DOI: 10.6084/m9.figshare.12629278.v2
title: Additional file 2 of Comparative analysis of single-cell transcriptomics in human and zebrafish oocytes

description: Additional file 2: Supplementary file 1. Transcripts per million (TPM) values and distribution for all nine samples in the three data sets (H1, H2, ZF) with respect to gene types.
DOI: 10.6084/m9.figshare.12629281.v2
title: Additional file 3 of Comparative analysis of single-cell transcriptomics in human and zebrafish oocytes

description: Additional file 3: Supplementary file 2. List of genes described by the quantile mapping data matrices (Fig. 3). For each location (given row/column position in the quantile mapping matrix), genes are listed along with their description and TPM values in the samples involved in the mapping.
DOI: 10.6084/m9.figshare.12629287.v1
title: Additional file 5 of Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes

description: Additional file 5: Supplementary file 4. Lists of highly expressed genes in the three data sets (H1, H2, ZF) and statistically significantly overrepresented Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, and Gene Ontology (GO) Biological Process (BP), Molecular Function (MF), and Cellular Component (CC) categories based on Database for Annotation, Visualization and Integrated Discovery (DAVID v6.8) analysis. DAVID analysis is done separately for the three highly expressed gene lists and a comparative analysis of these individual results are presented.
DOI: 10.6084/m9.figshare.12629278.v1
title: Additional file 2 of Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes

description: Additional file 2: Supplementary file 1. Transcripts per million (TPM) values and distribution for all nine samples in the three data sets (H1, H2, ZF) with respect to gene types.
DOI: 10.6084/m9.figshare.12629284.v2
title: Additional file 4 of Comparative analysis of single-cell transcriptomics in human and zebrafish oocytes

description: Additional file 4: Supplementary file 3. List of 397 highly concordant and high-confident orthologous genes between human and zebrafish oocytes and the functional and systems biology analysis results for theses 397 genes. Ingenuity Pathway Analysis (IPA) results show the list of significant canonical pathways, biological/toxicological functions, upstream regulators, regulator effects and gene interaction networks. EpiFactors database analysis identifies the genes among the 397 that have been shown to be involved in epigenetic regulation along with their targets.
DOI: 10.6084/m9.figshare.12629281.v1
title: Additional file 3 of Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes

description: Additional file 3: Supplementary file 2. List of genes described by the quantile mapping data matrices (Fig. 3). For each location (given row/column position in the quantile mapping matrix), genes are listed along with their description and TPM values in the samples involved in the mapping.
DOI: 10.6084/m9.figshare.12629269
title: Additional file 9 of Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality

description: Additional file 9. Target predicted in silico (psRNA Target), for each differentially expressed sequence in small RNA seq data.
DOI: 10.6084/m9.figshare.12629284.v1
title: Additional file 4 of Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes

description: Additional file 4: Supplementary file 3. List of 397 highly concordant and high-confident orthologous genes between human and zebrafish oocytes and the functional and systems biology analysis results for theses 397 genes. Ingenuity Pathway Analysis (IPA) results show the list of significant canonical pathways, biological/toxicological functions, upstream regulators, regulator effects and gene interaction networks. EpiFactors database analysis identifies the genes among the 397 that have been shown to be involved in epigenetic regulation along with their targets.
DOI: 10.6084/m9.figshare.12629260
title: Additional file 6 of Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality

description: Additional file 6. Raw reads and trimming statistics for small RNA-seq libraries.
DOI: 10.6084/m9.figshare.12629266
title: Additional file 8 of Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality

description: Additional file 8. List of differentially expressed sequence tag, for small RNA seq. For each sequence is given: length, reference miRNA and the reference species, the miRNA type (5′ or 3′, exact match or shifted) average normalized abundance, log2 Fold Change and FDR.
DOI: 10.6084/m9.figshare.12629269.v1
title: Additional file 9 of Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality

description: Additional file 9. Target predicted in silico (psRNA Target), for each differentially expressed sequence in small RNA seq data.
DOI: 10.6084/m9.figshare.12629259
title: Additional file 9 of Unveiling the genetic basis of Sclerotinia head rot resistance in sunflower

description: Additional file 9: Table S9. Putative genes in the vicinity of the associated markers.
DOI: 10.6084/m9.figshare.12629266.v1
title: Additional file 8 of Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality

description: Additional file 8. List of differentially expressed sequence tag, for small RNA seq. For each sequence is given: length, reference miRNA and the reference species, the miRNA type (5′ or 3′, exact match or shifted) average normalized abundance, log2 Fold Change and FDR.
DOI: 10.6084/m9.figshare.12629256
title: Additional file 8 of Unveiling the genetic basis of Sclerotinia head rot resistance in sunflower

description: Additional file 8: Table S8. Results of the association mapping analysis. Statistical significance and mean ± SE (standard error) per Sclerotinia Head Rot (SHR)-related phenotypic variable and genotype.
DOI: 10.6084/m9.figshare.12629260.v1
title: Additional file 6 of Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality

description: Additional file 6. Raw reads and trimming statistics for small RNA-seq libraries.
DOI: 10.6084/m9.figshare.12629253
title: Additional file 7 of Unveiling the genetic basis of Sclerotinia head rot resistance in sunflower

description: Additional file 7: Table S7. Mean squared differences (MSD) between observed and expected p-values for the four association models applied in the study.
DOI: 10.6084/m9.figshare.12629254
title: Additional file 4 of Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality

description: Additional file 4. List of differentially expressed genes, indicating for each gene in each comparison FDR, Log2 Fold Change, expression level for each sample as the output of DESeq2 and Blast2GO field description (Folder containing 6 TSV files 4.47 Mb).
DOI: 10.6084/m9.figshare.12629256.v1
title: Additional file 8 of Unveiling the genetic basis of Sclerotinia head rot resistance in sunflower

description: Additional file 8: Table S8. Results of the association mapping analysis. Statistical significance and mean ± SE (standard error) per Sclerotinia Head Rot (SHR)-related phenotypic variable and genotype.
DOI: 10.6084/m9.figshare.12629259.v1
title: Additional file 9 of Unveiling the genetic basis of Sclerotinia head rot resistance in sunflower

description: Additional file 9: Table S9. Putative genes in the vicinity of the associated markers.
DOI: 10.6084/m9.figshare.12629251
title: Additional file 3 of Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality

description: Additional file 3. Correlation coefficient among replicates and samples.
DOI: 10.6084/m9.figshare.12629253.v1
title: Additional file 7 of Unveiling the genetic basis of Sclerotinia head rot resistance in sunflower

description: Additional file 7: Table S7. Mean squared differences (MSD) between observed and expected p-values for the four association models applied in the study.
DOI: 10.6084/m9.figshare.12629254.v1
title: Additional file 4 of Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality

description: Additional file 4. List of differentially expressed genes, indicating for each gene in each comparison FDR, Log2 Fold Change, expression level for each sample as the output of DESeq2 and Blast2GO field description (Folder containing 6 TSV files 4.47 Mb).
DOI: 10.6084/m9.figshare.12629248
title: Additional file 2 of Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality

description: Additional file 2. Raw reads and mapping statistics for RNA-seq libraries.
DOI: 10.6084/m9.figshare.12629250
title: Additional file 6 of Unveiling the genetic basis of Sclerotinia head rot resistance in sunflower

description: Additional file 6: Table S6. Spearman correlations among Sclerotinia Head Rot (SHR)-phenotypic variables and the ancestry groups inferred by STRUCTURE.
DOI: 10.6084/m9.figshare.12629250.v1
title: Additional file 6 of Unveiling the genetic basis of Sclerotinia head rot resistance in sunflower

description: Additional file 6: Table S6. Spearman correlations among Sclerotinia Head Rot (SHR)-phenotypic variables and the ancestry groups inferred by STRUCTURE.
DOI: 10.6084/m9.figshare.12629244
title: Additional file 4 of Unveiling the genetic basis of Sclerotinia head rot resistance in sunflower

description: Additional file 4: Table S4. Adjusted means across five field trials for Sclerotinia Head Rot-related phenotypic variables, STRUCTURE ancestry coefficients (K = 3) and number of favourable alleles for the inbred lines of the Association Mapping Population (AMP).
DOI: 10.6084/m9.figshare.12629248.v1
title: Additional file 2 of Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality

description: Additional file 2. Raw reads and mapping statistics for RNA-seq libraries.
DOI: 10.6084/m9.figshare.12629251.v1
title: Additional file 3 of Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality

description: Additional file 3. Correlation coefficient among replicates and samples.
DOI: 10.6084/m9.figshare.12629241
title: Additional file 3 of Unveiling the genetic basis of Sclerotinia head rot resistance in sunflower

description: Additional file 3: Table S3. Genotypic data used for association mapping.
DOI: 10.6084/m9.figshare.12629244.v1
title: Additional file 4 of Unveiling the genetic basis of Sclerotinia head rot resistance in sunflower

description: Additional file 4: Table S4. Adjusted means across five field trials for Sclerotinia Head Rot-related phenotypic variables, STRUCTURE ancestry coefficients (K = 3) and number of favourable alleles for the inbred lines of the Association Mapping Population (AMP).