cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17434251
title: Click-Based Determination of Accumulation of Molecules in Escherichia coli

description: ABSTRACT

Gram-negative bacterial pathogens pose a significant challenge in drug development due to their outer membranes, which hinder the permeation of small molecules. The lack of widely adoptable methods to measure the cytosolic accumulation of compounds in bacterial cells has hindered drug discovery efforts. To address this challenge, we developed the CHloroalkane Azide Membrane Permeability (CHAMP) assay, specifically designed to assess molecule accumulation in the cytosol of Gram-negative bacteria. The CHAMP analysis utilizes biorthogonal epitopes anchored within HaloTag-expressing bacteria and measures the cytosolic arrival of azide-bearing test molecules through strain-promoted azide-alkyne cycloaddition. This workflow allows for robust and rapid accumulation measurements of thousands of azide-tagged small molecules. Our approach consistently produces a large number of accumulation profiles, significantly surpassing the scale of previous measurements in Escherichia coli (E. coli). We have validated the CHAMP assay across various chemical and biological contexts, including hyperporinated cells, membrane-permeabilized cells, and E. coli strains with impaired TolC function, a key component of the efflux pump. The CHAMP platform provides a simple, high-throughput, and accessible method that enables the analysis of over 1,000 molecules within hours. This technique addresses a critical gap in antimicrobial research and has the potential to accelerate the development of effective agents against Gram-negative pathogens.
DOI: 10.5519/qd.ejdm7wzp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.17391168
title: FoF Project Sensor Data

description: Datasets include the following:'participant_full_id', 'file_id', 'elapsed_time', 'filtered_elevation','filtered_bvp_values', 'filtered_HR', 'filtered_acc_x','filtered_acc_y', 'filtered_acc_z', 'filtered_eda_values','filtered_azimuth', 'filtered_temperature_values','filtered_steps_values', 'filtered_duration_fixation','filtered_duration_blink', 'filtered_elevation_cat', 'filtered_HR_cat','Potential_FoF'
DOI: 10.5281/zenodo.17391169
title: FoF Project Sensor Data

description: Datasets include the following:'participant_full_id', 'file_id', 'elapsed_time', 'filtered_elevation','filtered_bvp_values', 'filtered_HR', 'filtered_acc_x','filtered_acc_y', 'filtered_acc_z', 'filtered_eda_values','filtered_azimuth', 'filtered_temperature_values','filtered_steps_values', 'filtered_duration_fixation','filtered_duration_blink', 'filtered_elevation_cat', 'filtered_HR_cat','Potential_FoF'
DOI: 10.15468/dl.e579yq
title: Occurrence Download

description: A dataset containing 134540 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Manchester Museum, University of Manchester, Botany Collection"
 ]
}

 The dataset includes 134540 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055020-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15125/bath-01525
title: Data set for Curved Links as a Route to Auxetic Metamaterial Behaviour

description: This data set contains the measurements taken in the physical testing of all 19 Auxetic structures, alongside their complete FE results, the Ansys .dat Input files that generated them, a 3D model for each lattice and a second 3D model modified with feet to be printed as well as the all model support structure geometry (All Autodesk Inventor parts).
description: The Finite Element data is the input and output measurements computed on an Ansys workbench file, computed in the Ansys mechanical solver through the APDL language. The outputs are specific node tracking measurements from this solver.

The Physical testing data is interpreted through the filming of tracking points on the surfaces of physical test parts, which were stretched and compressed on an Instron test rig as described in the paper. The script used to analyse the film was written in matlab and is included.

The 3D models were all custom made on Autodesk Inventor, according to the mathematics described in the paper.
description: No 3rd party data sets were used.
description: The matlab script was created and run using Matlab r2023b

3D models were created on Autodesk Inventor Professional 2024

Finite Element models can be run on Ansys APDL or Ansys Workbench 2024 R2
description: All data in the file has been split into clearly named files, with the exception of the FE results. These have all been stored in an excel file in the main directory, with the tabs of the sheet identifying which model they relate to. Further, the matlab script used to analyse the videos is in the main file alongside this.
DOI: 10.15468/dl.xc9v5e
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Creobroter elongatus"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055024-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18112/openneuro.ds005405.v1.0.2
title: Protecting the Aging Brain - fMRI study of the brain in ketosis
DOI: 10.25574/27635
title: Chandra X-ray Observatory ObsId 27635

description: Surveying for Jets in the First Radio-Loud Quasars
DOI: 10.15468/dl.9rgec8
title: Occurrence Download

description: A dataset containing 947 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Symplocos setchuensis"
 ]
}

 The dataset includes 947 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055025-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/27714
title: Chandra X-ray Observatory ObsId 27714

description: Unveiling the connection between AGN and massive gas reservoirs in protoclusters
DOI: 10.25574/27715
title: Chandra X-ray Observatory ObsId 27715

description: Unveiling the connection between AGN and massive gas reservoirs in protoclusters
DOI: 10.15468/dl.f2p66x
title: Occurrence Download

description: A dataset containing 291 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Canada",
 "Country is Canada"
 ]
 },
 "TaxonKey is one of (Doellingeria umbellata pubens [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 291 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055026-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17432440
title: Flow-Bench

description: Major Changes for v0.2

(1) Add the Flow_Bench_Catalog_work.txt

There are 205 channllized events. Note: a) please download this file manually, b) change "dat" ->"txt", c) save it as "data/event_catalog/Flow_Bench_Catalog_work.txt" in Flow-Bench.

(2) Add data downloader

The downloader (functions/downloader/download_raw_data.py) will automatly download the raw data from this Zenodo and FDSN based on (1).
description: A global seismic record of channelized flows.

You can refer the details at:

our manuscript: https://doi.org/10.22541/essoar.175676964.46168374/v1

our code repositority: https://github.com/Qi-Zhou-Geo/Flow-Bench
DOI: 10.15468/dl.shzm2z
title: Occurrence Download

description: A dataset containing 13037 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.41555 48.93512,2.40307 48.95187,2.38273 48.95665,2.32342 48.94401,2.31881 48.92589,2.32188 48.90384,2.33145 48.8864,2.35385 48.87187,2.37744 48.86504,2.40547 48.86709,2.41983 48.88264,2.4294 48.89905,2.42786 48.91956,2.41555 48.93512))",
 "OccurrenceStatus is Present",
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862",
 "TaxonKey is Plantae",
 "Year 2015-2025"
 ]
}

 The dataset includes 13037 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055029-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2w546
title: Occurrence Download

description: A dataset containing 3017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is DEU.10_1",
 "TaxonKey is Salamandra salamandra"
 ]
}

 The dataset includes 3017 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055030-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/7bnxpd
title: Replication Package for: "Ever Since Allais"

description: This is the replication package for "Ever Since Allais," accepted in 2025 by the Journal of Political Economy.
DOI: 10.5281/zenodo.17088553
title: BETA-FOR_SP5_Decomposition_cellulose_paper_2023

description: This dataset contains decomposition rates of cellulose paper on all BETA-FOR patches. Four litter bags with a mesh width of 5 mm were placed on each patch. Each bag was placed on a seperate subpatch directly next to a TOMST logger. 
description: Variables Description################

*patchLabel_BETAFOR: unique BETA-FOR patch label

*patch: patch number

*Subpatch: ID of subpatch located on the patch

*Substrate_type: type of sample used

*mesh_width: width of the net of the litter bag

*start_date: start date of exposure of the sample to patch conditions

*weight_start: weight of sample at the start of the exposure 

*end_date: end date of exposure of the sample to patch conditions

*weight_end: weight of sample at the end of the exposure

*exposure_time: number of days the samples were exposed to patch conditions

*decomposition_rate_day: ((weight_start_dry - weight_end_dry )/ weight_start_dry)/exposure_time

*decomposition_rate: (weight_start_dry - weight_end_dry )/ weight_start_dry

*data_collector: person collecting the data and supervising field work teams
DOI: 10.5281/zenodo.17088554
title: BETA-FOR_SP5_Decomposition_cellulose_paper_2023

description: This dataset contains decomposition rates of cellulose paper on all BETA-FOR patches. Four litter bags with a mesh width of 5 mm were placed on each patch. Each bag was placed on a seperate subpatch directly next to a TOMST logger. 
description: Variables Description################

*patchLabel_BETAFOR: unique BETA-FOR patch label

*patch: patch number

*Subpatch: ID of subpatch located on the patch

*Substrate_type: type of sample used

*mesh_width: width of the net of the litter bag

*start_date: start date of exposure of the sample to patch conditions

*weight_start: weight of sample at the start of the exposure 

*end_date: end date of exposure of the sample to patch conditions

*weight_end: weight of sample at the end of the exposure

*exposure_time: number of days the samples were exposed to patch conditions

*decomposition_rate_day: ((weight_start_dry - weight_end_dry )/ weight_start_dry)/exposure_time

*decomposition_rate: (weight_start_dry - weight_end_dry )/ weight_start_dry

*data_collector: person collecting the data and supervising field work teams
DOI: 10.5281/zenodo.17088348
title: BETA-FOR_SP5_Decomposition_beech_litter_2023

description: This dataset contains decomposition rates of beech litter on all BETA-FOR patches. Four litter bags with a mesh width of 5 mm were placed on each patch. Each bag was placed on a seperate subpatch directly next to a TOMST logger. 
description: Variables Description################

*patchLabel_BETAFOR: unique BETA-FOR patch label

*patch: patch number

*Subpatch: ID of subpatch located on the patch

*Substrate_type: type of sample used

*mesh_width: width of the net of the litter bag

*start_date: start date of exposure of the sample to patch conditions

*weight_start: weight of sample at the start of the exposure 

*end_date: end date of exposure of the sample to patch conditions

*weight_end: weight of sample at the end of the exposure

*exposure_time: number of days the samples were exposed to patch conditions

*decomposition_rate_day: ((weight_start_dry - weight_end_dry )/ weight_start_dry)/exposure_time

*decomposition_rate: (weight_start_dry - weight_end_dry )/ weight_start_dry

*data_collector: person collecting the data and supervising field work teams
DOI: 10.5281/zenodo.17088347
title: BETA-FOR_SP5_Decomposition_beech_litter_2023

description: This dataset contains decomposition rates of beech litter on all BETA-FOR patches. Four litter bags with a mesh width of 5 mm were placed on each patch. Each bag was placed on a seperate subpatch directly next to a TOMST logger. 
description: Variables Description################

*patchLabel_BETAFOR: unique BETA-FOR patch label

*patch: patch number

*Subpatch: ID of subpatch located on the patch

*Substrate_type: type of sample used

*mesh_width: width of the net of the litter bag

*start_date: start date of exposure of the sample to patch conditions

*weight_start: weight of sample at the start of the exposure 

*end_date: end date of exposure of the sample to patch conditions

*weight_end: weight of sample at the end of the exposure

*exposure_time: number of days the samples were exposed to patch conditions

*decomposition_rate_day: ((weight_start_dry - weight_end_dry )/ weight_start_dry)/exposure_time

*decomposition_rate: (weight_start_dry - weight_end_dry )/ weight_start_dry

*data_collector: person collecting the data and supervising field work teams
DOI: 10.48322/vez4-eg30
title: STEREO SECCHI Cor2 telescopes P0 FITS files

description: Total Brightness data from STEREO SECCHI, Sun Earth Connection Coronal and Heliospheric Investigation, Cor2 telescopes at 1 hr cadence (except for special observing campaigns) and full resolution (2048²). The data are generally available within about three days.
DOI: 10.5517/ccdc.csd.cc1p14wr
title: CCDC 1550244: Experimental Crystal Structure Determination

description: Related Article: Agata Bartyzel|2017|Polyhedron|134|30|doi:10.1016/j.poly.2017.06.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p14xs
title: CCDC 1550245: Experimental Crystal Structure Determination

description: Related Article: Agata Bartyzel|2017|Polyhedron|134|30|doi:10.1016/j.poly.2017.06.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p14yt
title: CCDC 1550246: Experimental Crystal Structure Determination

description: Related Article: Agata Bartyzel|2017|Polyhedron|134|30|doi:10.1016/j.poly.2017.06.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p14zv
title: CCDC 1550247: Experimental Crystal Structure Determination

description: Related Article: Heiko Bauer, Mercedes Alonso, Christian Färber, Holger Elsen, Jürgen Pahl, Andrea Causero, Gerd Ballmann, Frank De Proft, Sjoerd Harder|2018|Nat. Catal.|1|40|doi:10.1038/s41929-017-0006-0
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p150x
title: CCDC 1550248: Experimental Crystal Structure Determination

description: Related Article: Heiko Bauer, Mercedes Alonso, Christian Färber, Holger Elsen, Jürgen Pahl, Andrea Causero, Gerd Ballmann, Frank De Proft, Sjoerd Harder|2018|Nat. Catal.|1|40|doi:10.1038/s41929-017-0006-0
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p151y
title: CCDC 1550249: Experimental Crystal Structure Determination

description: Related Article: Heiko Bauer, Mercedes Alonso, Christian Färber, Holger Elsen, Jürgen Pahl, Andrea Causero, Gerd Ballmann, Frank De Proft, Sjoerd Harder|2018|Nat. Catal.|1|40|doi:10.1038/s41929-017-0006-0
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p152z
title: CCDC 1550250: Experimental Crystal Structure Determination

description: Related Article: Heiko Bauer, Mercedes Alonso, Christian Färber, Holger Elsen, Jürgen Pahl, Andrea Causero, Gerd Ballmann, Frank De Proft, Sjoerd Harder|2018|Nat. Catal.|1|40|doi:10.1038/s41929-017-0006-0
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p1697
title: CCDC 1550288: Experimental Crystal Structure Determination

description: Related Article: Michał K. Leszczyński, Iwona Justyniak, and Janusz Lewiński|2017|Organometallics|36|2377|doi:10.1021/acs.organomet.7b00287
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p1541
title: CCDC 1550252: Experimental Crystal Structure Determination

description: Related Article: Chakadola Panda,  Prashanth W. Menezes,  Carsten Walter,  Shenglai Yao,  Matthias E. Miehlich,  Vitaly Gutkin,  Karsten Meyer and Matthias Driess|2017|Angew.Chem.,Int.Ed.|56|10506|doi:10.1002/anie.201706196
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p16b8
title: CCDC 1550289: Experimental Crystal Structure Determination

description: Related Article: Michał K. Leszczyński, Iwona Justyniak, and Janusz Lewiński|2017|Organometallics|36|2377|doi:10.1021/acs.organomet.7b00287
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p1552
title: CCDC 1550253: Experimental Crystal Structure Determination

description: Related Article: Geng-Geng Luo, Hai-Feng Su, An Xiao, Zhi Wang, Yang Zhao, Qiao-Yu Wu, Ji-Huai Wu, Di Sun, Lan-Sun Zheng|2017|Chem.-Eur.J.|23|14420|doi:10.1002/chem.201703468
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.ewxbes
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Idolomantis diabolica"
 ]
}

 The dataset includes 72 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055031-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc1kqtqt
title: CCDC 1451907: Experimental Crystal Structure Determination

description: Related Article: Yu-Jie Cui, Feng Hu, Ai-Quan Jia, Zhi-Feng Xin, Qian-Feng Zhang|2018|J.Coord.Chem.|71|2183|doi:10.1080/00958972.2018.1478085
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p1563
title: CCDC 1550254: Experimental Crystal Structure Determination

description: Related Article: Geng-Geng Luo, Hai-Feng Su, An Xiao, Zhi Wang, Yang Zhao, Qiao-Yu Wu, Ji-Huai Wu, Di Sun, Lan-Sun Zheng|2017|Chem.-Eur.J.|23|14420|doi:10.1002/chem.201703468
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1kqttx
title: CCDC 1451910: Experimental Crystal Structure Determination

description: Related Article: Yu-Jie Cui, Feng Hu, Ai-Quan Jia, Zhi-Feng Xin, Qian-Feng Zhang|2018|J.Coord.Chem.|71|2183|doi:10.1080/00958972.2018.1478085
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.