cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26007/ttwp-y092
title: Data for the Light Italian Cubsesat for Imaging of Asteroids (LICIACube) Mission Radio Science Tracking and Navigation Files (TRK-2-34), Version 1.0

description: The LICIACube mission receives Tracking and Navigation Files (TRK-2-34) from the Deep Space Network (DSN) collected primarily from signals emitted by the high gain antenna (HGA) onboard the LICIACube spacecraft. These are binary files of table data whose fields and format are described by the TRK-2-34 DSN Tracking System Data Archival Format document referenced in the LICIACube Radio Science SIS. These files have been sorted by data record type, of which there are approximately 18. Both mission navigators and those working on radio science investigations use these data.
DOI: 10.26007/trxj-vt70
title: Calibrated Images from the Didymos Reconnaissance and Asteroid Camera for Optical navigation (DRACO) instrument flown aboard NASA's Double Asteroid Redirection Test (DART) Mission, Version 2.0

description: This data collection contains calibrated images from the Didymos Reconnaissance and Asteroid Camera for Optical navigation (DRACO) instrument flown aboard the impactor spacecraft of NASA's Double Asteroid Redirection Test (DART) mission. These images have been calibrated to either radiance or reflectance, depending on the mission phase, and have been put into a simple 2D fits format. Ancillary files used in the calibration process are included in the data set as either 2D fits format or ASCII fixed-width table format. The DART mission was a planetary defense mission designed to test and measure the deflection caused by a kinetic impactor (the spacecraft) on the orbit of Dimorphos asteroid around its primary, (65803) Didymos.
DOI: 10.26007/63kp-wp26
title: Maneuver Acceleration Files (MAF) from NASA's Double Asteroid Redirection Test (DART), Version 1.0

description: The DART mission provides a small forces file, or Maneuver Acceleration File (MAF), that describes the thrusting undertaken by DART and aids in carrying out science associated with the DART radio science data. These files record the cumulative delta-v effect of attitude thruster firing over specified time periods. Estimates of mass loss due to usage are also included. The files are fixed-width column ASCII csv files containing a header and a table. Table header and table data descriptions can be found in the DART Radio Science SIS document.
DOI: 10.26007/fxfa-4d82
title: Radio Science Tracking and Navigation Files (TRK-2-34) for NASA's Double Asteroid Redirection Test (DART), Version 1.0

description: The DART mission receives Tracking and Navigation Files (TRK-2-34) from the Deep Space Network (DSN) collected primarily from signals emitted by the high gain antenna (HGA) onboard the DART spacecraft. These are binary files of table data whose fields and format are described by the TRK-2-34 DSN Tracking System Data Archival Format document referenced in the DART Radio Science SIS. These files have been sorted by data record type, of which there are approximately 18. Both mission navigators and those working on radio science investigations use these data.
DOI: 10.26007/ty4g-5p90
title: Deep Space Network (DSN) Media Calibration (TRK-2-23) Files for NASA's Double Asteroid Redirection Test (DART), Version 1.0

description: The DART mission receives Ionosphere Media Calibration Files (TRK-2-23) from the Deep Space Network (DSN) collected primarily from signals emitted by the high gain antenna (HGA) onboard the DART spacecraft. These are ASCII files that correspond to either Doppler and range data (indicated with 'dop') or Delta Differenced One-way Ranging (DDOR) data (indicated with 'vlb'). They are useful for compensating for media transmission effects on the propagation of radiometric signals. The format of these files is described in detail in the TRK-2-23 DSN Media Calibration Interface document that is referenced in the DART Radio Science SIS.
DOI: 10.26007/vy8v-0434
title: Raw Images from the Didymos Reconnaissance and Asteroid Camera for Optical navigation (DRACO) instrument flown aboard NASA's Double Asteroid Redirection Test (DART) Mission, Version 2.0

description: This data collection contains the raw images returned by the Didymos Reconnaissance and Asteroid Camera for Optical navigation (DRACO) instrument flown aboard the impactor spacecraft of NASA's Double Asteroid Redirection Test (DART) mission. These images show the asteroid (65803) Didymos and its moon, Dimorphos, and have been put into a simple 2D FITS format ready for calibration and analysis. The DART mission was a planetary defense mission designed to test and measure the deflection caused by a kinetic impactor (the spacecraft) on the orbit of Dimorphos around its primary, Didymos.
DOI: 10.26007/ydbc-zx93
title: Light Italian Cubesat for Imaging of Asteroids (LICIACube) Spacecraft Bundle containing the collections generated as part of the LICIACube ASI Mission, Version 1.0

description: This bundle contains all the operational products generated by both the Liciacube Explorer Imaging for Asteroid (LEIA) and Liciacube Unit Key Explorer (LUKE) instruments together with Radio Science data as part of the LICIACube ASI mission. The bundle also includes documentation that describes the data products for each data collection.
DOI: 10.34740/kaggle/dsv/6751261
title: TITANIC OUTPUT FROM KNIME
DOI: 10.5281/zenodo.8136926
title: Magnetic control of GFP-like fluorescent proteins - Raw data 1

description: We've discovered a simple, nontoxic, biocompatible way to control the brightness of GFP-like fluorescent proteins via modest magnetic fields (~10 mT). Fluorescent proteins which seem magnetically inert (e.g. EGFP, mScarlet) become magnetoresponsive in the presence of an appropriate cofactor (e.g. EGFP-FlavinTag, or an mScarlet/FMN solution). This method works at room-temperature and body-temperature, in vitro, in E. coli and in cultured mammalian cells.
The GFP-family magnetoresponse is weak (ΔF/F≈1%), but shows the hallmarks of evolvability. This suggests exciting technological possibilities, both short-term (e.g. lock-in detection, multiplexing) and long-term (e.g. optically-detected MRI, magnetogenetics).
We've also discovered weak magnetoresponse from a member of the LOV-domain family. This suggests the possibility that magnetoresponse is a general feature of fluorescent proteins, and not unique to the cryptochrome/photolyase family.
 
This repository holds some of the raw data for the main text figures. For the contents of the paper, please see: doi.org/10.5281/zenodo.8137174
DOI: 10.5281/zenodo.8136927
title: Magnetic control of GFP-like fluorescent proteins - Raw data 1

description: We've discovered a simple, nontoxic, biocompatible way to control the brightness of GFP-like fluorescent proteins via modest magnetic fields (~10 mT). Fluorescent proteins which seem magnetically inert (e.g. EGFP, mScarlet) become magnetoresponsive in the presence of an appropriate cofactor (e.g. EGFP-FlavinTag, or an mScarlet/FMN solution). This method works at room-temperature and body-temperature, in vitro, in E. coli and in cultured mammalian cells.
The GFP-family magnetoresponse is weak (ΔF/F≈1%), but shows the hallmarks of evolvability. This suggests exciting technological possibilities, both short-term (e.g. lock-in detection, multiplexing) and long-term (e.g. optically-detected MRI, magnetogenetics).
We've also discovered weak magnetoresponse from a member of the LOV-domain family. This suggests the possibility that magnetoresponse is a general feature of fluorescent proteins, and not unique to the cryptochrome/photolyase family.
 
This repository holds some of the raw data for the main text figures. For the contents of the paper, please see: doi.org/10.5281/zenodo.8137174
DOI: 10.5281/zenodo.8137092
title: Magnetic control of GFP-like fluorescent proteins - Raw data 2

description: We've discovered a simple, nontoxic, biocompatible way to control the brightness of GFP-like fluorescent proteins via modest magnetic fields (~10 mT). Fluorescent proteins which seem magnetically inert (e.g. EGFP, mScarlet) become magnetoresponsive in the presence of an appropriate cofactor (e.g. EGFP-FlavinTag, or an mScarlet/FMN solution). This method works at room-temperature and body-temperature, in vitro, in E. coli and in cultured mammalian cells.
The GFP-family magnetoresponse is weak (ΔF/F≈1%), but shows the hallmarks of evolvability. This suggests exciting technological possibilities, both short-term (e.g. lock-in detection, multiplexing) and long-term (e.g. optically-detected MRI, magnetogenetics).
We've also discovered weak magnetoresponse from a member of the LOV-domain family. This suggests the possibility that magnetoresponse is a general feature of fluorescent proteins, and not unique to the cryptochrome/photolyase family.
 
This repository holds some of the raw data for the main text figures. For the contents of the paper, please see: doi.org/10.5281/zenodo.8137174
DOI: 10.5281/zenodo.8137093
title: Magnetic control of GFP-like fluorescent proteins - Raw data 2

description: We've discovered a simple, nontoxic, biocompatible way to control the brightness of GFP-like fluorescent proteins via modest magnetic fields (~10 mT). Fluorescent proteins which seem magnetically inert (e.g. EGFP, mScarlet) become magnetoresponsive in the presence of an appropriate cofactor (e.g. EGFP-FlavinTag, or an mScarlet/FMN solution). This method works at room-temperature and body-temperature, in vitro, in E. coli and in cultured mammalian cells.
The GFP-family magnetoresponse is weak (ΔF/F≈1%), but shows the hallmarks of evolvability. This suggests exciting technological possibilities, both short-term (e.g. lock-in detection, multiplexing) and long-term (e.g. optically-detected MRI, magnetogenetics).
We've also discovered weak magnetoresponse from a member of the LOV-domain family. This suggests the possibility that magnetoresponse is a general feature of fluorescent proteins, and not unique to the cryptochrome/photolyase family.
 
This repository holds some of the raw data for the main text figures. For the contents of the paper, please see: doi.org/10.5281/zenodo.8137174
DOI: 10.3886/e158821v1-142497
title: Data and Code for: The Racial Wealth Gap and the Role of Firm Ownership

description: Data and code accompanying "The Racial Wealth Gap and the Role of Firm Ownership"<br><br>This paper develops an overlapping generations model that isolates the impact of the U.S. racial wealth gap in 1962 on the long-run dynamics of wealth. The model predicts that one component of the initial gap, firm ownership, coupled with the intergenerational transfer of that ownership, results in a permanent wealth gap independent of other dimensions of inequality. This implies that even if all discrimination against black Americans had ceased upon the end of Jim Crow, the wealth gap would have persisted without a reparations policy addressing the fact that the initial firm ownership gap arose in the first place.
description: Survey of Consumer Finances<br>Representative sample of U.S. households.
DOI: 10.25345/c5dj58t0q
title: MassIVE MSV000093164 - 20231020_seaweed_LCMS_RAW_DATA
title: We utilized Agilent 6545 Q_TOF LC/MS instrument to consider seaweed samples.
DOI: 10.34740/kaggle/dsv/6751538
title: Balochi Language to English Translation Dataset
DOI: 10.5281/zenodo.10028241
title: From cameras to confocal to cytometry: measuring tumbling rates is a general way to reveal protein binding - Raw Data

description: Molecular interactions are central to understanding any biological system, but they are labor-intensive to measure with existing optical approaches. Tracking "tumbling" (rotational diffusion) is a generalizable strategy for determining particle size, from which the presence and size of binding partners in a complex can be inferred. However, fluorescence-based tumbling measurements have historically been limited to small targets (<30 kDa) due to the short (nanosecond) lifetime of typical fluorophores. This size limit leaves most of the proteome inaccessible, severely limiting the usefulness of the approach. To reveal larger complexes and realize the full potential of optical tumbling measurements, several groups have explored longer-lived states, such as photobleached molecules, reversibly photoswitched proteins, or triggerable triplets. Here, we describe four combinations of photophysics and hardware for measuring tumbling with longer-lived states, gearing each toward a candidate biological use case. We explore these four measurement schemes with simulations and, in one case, experimentally validate the approach. Our work suggests that, with minor reconfiguring, most fluorescence approaches to detect the presence of proteins could also reveal their binding state.
This repository holds the raw data for the main text figures. For the contents of the paper, please see: doi.org/10.5281/zenodo.10028432
DOI: 10.5281/zenodo.8212449
title: Passive permeability controls synthesis for the allelochemical sorgoleone in sorghum root exudate

description: Input structures for a manuscript, along with selected output data and structures. This directory structure contains a cut-down copy of the directories used to generate the simulation data and the analysis. In order to make this fit into the 50GB Zenodo limit, it was constructed with the following tar command: tar -zcvf sorgoleonepermeability.tar.gz --exclude="*BAK" --exclude="*#" --exclude="*log" --exclude="*xsc" --exclude="*coor" --exclude="*vel" --exclude="*[0-9].out" --exclude="*old" --exclude="*dcd" --exclude="*tmp" --exclude="*ppm" --exclude="*png" --exclude="*pdf"  --exclude="*catchy*" --exclude="*svg" --exclude="*restart*" --exclude="*history" --exclude="core.*" --exclude="FFTW_NAMD*" --exclude="*avi" --exclude="*mp4" sorgoleone-permeability, which intentionally excludes large files. The full dataset that includes trajectories is available upon request.


The data is split into two directories initially "build" and "Simulations"



	
"build" directory is the part where initial system for unbiased and biased simulation were build using "resolvate.tcl" and "smd-single-build-system.tcl" respectively.
	
"Simulations" directory has the different namd files for running unbiased simulation, steered molecular dynamics and replica exchange  umbrella sampling.



The folder structure was generated using  "gendirs*.py".
The unbiased simulations were run using "run.namd".
Steered molecular dynamics namd files were with name "step*.namd" and colvars configuration file are named "step*.conf".

Replica exchange moleuclar dynamics (REUS) system was generated using "buildreplicas*.tcl".
Replica windows size and  force constant were written into a namd configuration file using "reus-genscript*.py".
REUS general configuration file containing the parameters and forcefield is  named as "base.namd".
Colvars for leaflet exchange REUS are in "replicadistZcolvars.conf".
Colvars for absorption into water  REUS are in  "replicadistcoordNumclovar.conf".
Colvars for absorption into organic phase  REUS are in  "replica-blob-run4.conf"


Umbrella sampling is performed with "umbrella.namd".


For visualizing trajectories in VMD  "load*.tcl" scripts were used.
DOI: 10.5281/zenodo.8212450
title: Passive permeability controls synthesis for the allelochemical sorgoleone in sorghum root exudate

description: Input structures for a manuscript, along with selected output data and structures. This directory structure contains a cut-down copy of the directories used to generate the simulation data and the analysis. In order to make this fit into the 50GB Zenodo limit, it was constructed with the following tar command: tar -zcvf sorgoleonepermeability.tar.gz --exclude="*BAK" --exclude="*#" --exclude="*log" --exclude="*xsc" --exclude="*coor" --exclude="*vel" --exclude="*[0-9].out" --exclude="*old" --exclude="*dcd" --exclude="*tmp" --exclude="*ppm" --exclude="*png" --exclude="*pdf"  --exclude="*catchy*" --exclude="*svg" --exclude="*restart*" --exclude="*history" --exclude="core.*" --exclude="FFTW_NAMD*" --exclude="*avi" --exclude="*mp4" sorgoleone-permeability, which intentionally excludes large files. The full dataset that includes trajectories is available upon request.


The data is split into two directories initially "build" and "Simulations"



	
"build" directory is the part where initial system for unbiased and biased simulation were build using "resolvate.tcl" and "smd-single-build-system.tcl" respectively.
	
"Simulations" directory has the different namd files for running unbiased simulation, steered molecular dynamics and replica exchange  umbrella sampling.



The folder structure was generated using  "gendirs*.py".
The unbiased simulations were run using "run.namd".
Steered molecular dynamics namd files were with name "step*.namd" and colvars configuration file are named "step*.conf".

Replica exchange moleuclar dynamics (REUS) system was generated using "buildreplicas*.tcl".
Replica windows size and  force constant were written into a namd configuration file using "reus-genscript*.py".
REUS general configuration file containing the parameters and forcefield is  named as "base.namd".
Colvars for leaflet exchange REUS are in "replicadistZcolvars.conf".
Colvars for absorption into water  REUS are in  "replicadistcoordNumclovar.conf".
Colvars for absorption into organic phase  REUS are in  "replica-blob-run4.conf"


Umbrella sampling is performed with "umbrella.namd".


For visualizing trajectories in VMD  "load*.tcl" scripts were used.
DOI: 10.5281/zenodo.10028240
title: From cameras to confocal to cytometry: measuring tumbling rates is a general way to reveal protein binding - Raw Data

description: Molecular interactions are central to understanding any biological system, but they are labor-intensive to measure with existing optical approaches. Tracking "tumbling" (rotational diffusion) is a generalizable strategy for determining particle size, from which the presence and size of binding partners in a complex can be inferred. However, fluorescence-based tumbling measurements have historically been limited to small targets (<30 kDa) due to the short (nanosecond) lifetime of typical fluorophores. This size limit leaves most of the proteome inaccessible, severely limiting the usefulness of the approach. To reveal larger complexes and realize the full potential of optical tumbling measurements, several groups have explored longer-lived states, such as photobleached molecules, reversibly photoswitched proteins, or triggerable triplets. Here, we describe four combinations of photophysics and hardware for measuring tumbling with longer-lived states, gearing each toward a candidate biological use case. We explore these four measurement schemes with simulations and, in one case, experimentally validate the approach. Our work suggests that, with minor reconfiguring, most fluorescence approaches to detect the presence of proteins could also reveal their binding state.
This repository holds the raw data for the main text figures. For the contents of the paper, please see: doi.org/10.5281/zenodo.10028432
DOI: 10.17909/pepe-f853
title: TIC 307958020
DOI: 10.25345/c58s4k06c
title: MassIVE MSV000093165 - Selective Dependence on Stromal Acetate induced Polyamine Metabolism Provides Unique Therapeutic Opportunities in Pancreatic Cancer
title: The ability of tumor cells to thrive in harsh microenvironments depends on the utilization of nutrients available in the milieu. However, the signaling and nutritional potential of the stromal cell-secreted metabolites remains poorly understood. We identified a novel metabolic crosstalk between cancer associated fibroblasts (CAFs) and pancreatic cancer cells. We demonstrate that pancreatic CAFs regulate tumor cell metabolism through the secretion of acetate, which can be blocked by silencing ACLY in CAFs. Cancer cells present a unique dependence on CAF-derived acetate under acidosis. We further show that ACSS2 channels the exogenous acetate to regulate the dynamic cancer epigenome and transcriptome, thereby facilitating cancer cell survival in the acidic microenvironment. Comparative H3K27ac ChIP-Seq and RNA-Seq analyses revealed alterations in polyamine homeostasis through regulation of SAT1 gene expression and enrichment of the SP1-responsive signature. We observed novel acetate/ACSS2-mediated acetylation of SP1 at lysine 19 residue that increased SP1 protein stability and transcriptional activity. Genetic or pharmacologic inhibition of the ACSS2-SP1-SAT1 axis diminished tumor burden in mouse models. Increased SAT1-mediated production of N1-acetylspermidine correlated with disease progression in the spontaneous tumor progression model and poor survival in cancer patients. These results reveal that the metabolic flexibility imparted by the stroma-derived acetate enabled cancer cell survival under acidosis via the ACSS2-SP1-SAT1 axis.
DOI: 10.6084/m9.figshare.20502567.v8
title: Socio-cognitive determinants affecting insulin adherence/non-adherence in late adolescents and young adults with type 1 diabetes: a systematic review

description: This extended data for the systematic review entitled “ Socio-cognitive determinants affecting insulin adherence/non-adherence in late adolescents and young adults with type 1 diabetes: a systematic review” contains the following dataset:Appendix 1: PubMed search strategy.Appendix 2: The National Heart, Lung, and Blood Institute (NHLBI) quality assessment tool for observational cohort and cross-sectional studies.Appendix 3: Data extraction form adapted from the Cochrane Collaboration.Appendix 4 - Citations of all previously identified Systematic review.Appendix 5 - Literature Search Update_18-24_July_2023.Appendix 6 - Systematic Reviews Update.xlsx
DOI: 10.25345/c5513v62j
title: MassIVE MSV000093166 - rTg-DI Rat Model of Cerebral Amyloid Angiopathy 4 Month Brain Regional Proteomics
title: Raw spectral files of 4 month rTg-DI rat model of Cerebral Amyloid Angiopathy cortex, hippocampus, and thalamus, and age matched wild type control animals.
DOI: 10.34740/kaggle/dsv/5659646
title: Facebook& Internet Addiction: A Social Diablo...
DOI: 10.21223/nfnpo8/lupk8d
title: PTYL200506_CIPSRM-2.xls

description: :unav
DOI: 10.21223/nfnpo8/vnsufz
title: 01_Fieldbook_PTYL200506_CIPSRM-2.txt

description: :unav
DOI: 10.21223/nfnpo8/njcnd2
title: 03_Data_Dictionary.txt

description: :unav
DOI: 10.21223/nfnpo8/rvrme3
title: 02_Material_list.txt

description: :unav
DOI: 10.21223/nfnpo8
title: Dataset for: Evaluation of Potato clones in San Ramon, Junin, 2005

description: The objective of this study was to assess the yield of 29 potato clones during the winter of 2005 in San Ramon, Junin.
DOI: 10.5281/zenodo.10028470
title: Covert Radiation Anomaly Bomb Sensor NaI Distance Testing

description: This data if for Covert Covert Radiation Anomaly Bomb Sensor (CRABS). This contains the results for distance testing of the sodium Iodide gamma detectors.
DOI: 10.5281/zenodo.10028469
title: Covert Radiation Anomaly Bomb Sensor NaI Distance Testing

description: This data if for Covert Covert Radiation Anomaly Bomb Sensor (CRABS). This contains the results for distance testing of the sodium Iodide gamma detectors.
DOI: 10.5281/zenodo.10028507
title: Covert System For Detecting Nuclear Dirty Bombs In Public Venues  Crab Pot Field Test

description: This is the data set and files for the field test of the Crab Pot.
DOI: 10.5281/zenodo.10028506
title: Covert System For Detecting Nuclear Dirty Bombs In Public Venues  Crab Pot Field Test

description: This is the data set and files for the field test of the Crab Pot.