cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27261714
title: Supplementary Material for: A High-Intensity versus Moderate-Intensity exercise training program in Alpha-1 antitrypsin deficiency-related COPD (IMAC): a randomized, controlled trial.

description: Introduction: Training-induced adaptations of the oxidative capacity have been shown to be blunted in alpha-1 antitrypsin deficiency (AATD)-related chronic obstructive pulmonary disease (COPD). To improve training outcomes in AATD, this study was aimed to compare the effects of two exercise training programs with different training intensities. 
Methods: 30 patients with AATD (genotype PiZZ) and COPD III-IV were randomly assigned either to high-intensity (HIT) or moderate-intensity training (MIT), each consisting of endurance, strength and a squat training for a duration of 3 weeks. 6-minute walk distance (6MWD) was used as the primary outcome. 
Results: 25 subjects augmented with alpha-1 antitrypsin (HIT: n=12, FEV1 41.3±17.4%pred., MIT: n=13, FEV1 45.9±15.5%pred.) completed the study. In HIT and MIT, 6MWD (+37±43m vs. +32±28m, p=0.741), 1-minute sit-to-stand test (5.6±4.9 repetitions vs. 5.6±4.5 repetitions, p=0.766), exercise-induced BORG dyspnoea (-1.4±1.7pts vs. -1.5±2.4pts, p=0.952) and all CRQ domains have improved after training without between-group differences. When considering only subgroups of (probably) anxious or depressive patients (Hospital Anxiety and Depression Scale [HADS] ≥ 8 pts), only HIT induced a significant reduction of anxiety (-4.8 pts, 95% CI [2.1 to 7.5]) or depression symptoms (-5.0 pts, 95% CI [2.8 to 7.3]).

Conclusion: Although HIT and MIT were equally effective by improving exercise capacity, quality of life and dyspnoea in homozygous AATD, HIT may show advantages over MIT, if anxiety or depression symptoms were present. The goal should be personalized training based on the patient's personal preference in order to achieve long-term adherence.
DOI: 10.21227/bqfj-6c39
title: Elliptic Curve Lightweight Cryptography: a Survey

description: This dataset provides the source data for the figures and tables found in the paper "Elliptic Curve Lightweight Cryptography: a Survey."
DOI: 10.21227/vvvq-6w47
title: Apache Access Log Server Pre-processing for Web Intrusion Detection

description: This dataset is apache access log server. It contains: ip address, datetime, gmt, request, status, size, user agent, country, label. The dataset show malicious activity in IP address, request, and so on. You can analyze more as intrusion detection parameter.
DOI: 10.5067/altts-tja50
title: Integrated Multi-Mission Ocean Altimeter Data for Climate Research complete time series Version 5.0
DOI: 10.5281/zenodo.10663106
title: Phase-Change Memory via a Phase-Changeable Self-Confined Nano-Filament_Source-Data

description: Source data for the paper "Phase-Change Memory via a Phase-Changeable Self-Confined Nano-Filament".
DOI: 10.5281/zenodo.10750545
title: Size normalizing planktonic Foraminifera abundance in the water column

description: Data and R code for the paper Size normalizing planktonic Foraminifera abundance in the water column (https://doi.org/10.1002/lom3.10637) by Sonia Chaabane, Thibault de Garidel-Thoron, Xavier Giraud, Julie Meilland, Geert-Jan A. Brummer, Lukas Jonkers, P. Graham Mortyn, Mattia Greco, Nicolas Casajus, Olivier Sulpis, Michal Kucera, Azumi Kuroyanagi, Hélène Howa, Gregory Beaugrand, Ralf Schiebel

 

The codes serve to generate a new normalization approach for estimating the abundance of planktonic Foraminifera (ind/m³) within the specified collection size fraction range. Data utilized in this study are sourced from the FORCIS database, containing records collected from the global ocean at various depths spanning the past century. A cumulative distribution across size fractions is identified and modeled using a Michaelis-Menten function. This modeling results in multiplication factors enabling the normalization of one fraction to any other size fraction equal to or larger than 100 µm. The resultant size normalization model is then tested across various depths and compared against a previous size normalization solution.

Scripts written by Sonia Chaabane.

DATA SOURCES



FORCIS database: https://doi.org/10.5281/zenodo.7390791


DATA



data_raw_from_excel.RDS


CODES



Code 1_Prepare the data.R: Reads the data and prepares it for analysis.

Code 2_Data-model_training.R: Analyzes the data and builds the model.

Code 2_MM_confidence interval_all oceans_depths_seasons.R: Analyzes the data and computes confidence intervals across all oceans, depths, and seasons.

Code 3_Validation.R: Compares actual vs. estimated number concentrations.

Code 4_Test with berger scheme.R: Compares actual vs. estimated number concentrations using Berger 1969 correction scheme.

Code 5_Cross validation_Retailleau et al.R: Applies the FORCIS number concentration-size correction scheme on an independent dataset.

Code 6_Retailleau et al. using berger approach.R: Compares actual vs. estimated number concentrations using Berger 1969 correction scheme from an independent dataset.

function.R: Additional functions used in the analysis.
DOI: 10.5281/zenodo.12680558
title: Single-track ATLAS-like Inner Detector hit data for Tracking Studies

description: A dataset to study the performance of tracking tools. The events contain single tracks with pile-up and detector noise according to Run 3 ATLAS conditions. More details can be found here.

The root files contain two trees: "tree" and "track". The first contains the hit coordinates in mm and labels (1 - signal hit, 0 - pile up, -1 - noise). "Track" contains the truth z0 and pT of the track. The train, validation, and test files contain 398 996, 49 885, and 49878 events respectively.
DOI: 10.5281/zenodo.12784526
title: Personalized in silico model for radiation-induced pulmonary fibrosis | (source code, simulation input+output data)

description: This repository concerns the supplementary material data of the research article entitled "Personalised in silico model for radiation-induced pulmonary fibrosis" that is published in the Royal Society Interface journal (rsif.royalsocietypublishing.org). More specifically, the repository contains the source code of the radiation-induced pulmonary fibrosis simulator, the results produced from the medical image analysis of this study (CT scans and RT dosage maps) for each patient case, the input files necessary to run the simulator and the corresponding output produced respectively. Each patient ID corresponds to each case documented in the research article.
DOI: 10.5281/zenodo.13315436
title: Custom RevSC analysis files for Fink et al, 2024, in Nature Cell Biology.

description: These files are the inputs and outputs for the analysis scripts at https://github.com/wrana-lab/revSC_tgfb

This data and analysis is part of Fink et al, 2024, in Nature Cell Biology.

It contains two folders, the main revSC_tgfb folder contains the inputs and outputs scripts along with intermediate files necessary for code execution, and the Seur_Objs folder which contains all of the Seurat objects used in this study as .RData files. 

The folder is provided as a .zip file which we recommend a utility such as WinRAR to extract.
DOI: 10.5281/zenodo.3893538
title: DATASET - Baseline data LIFT Synthesis Writing project

description: Dataset with data on text quality, keystroke logging process measures, and writer characteristics. This dataset serves as a baseline for studies on synthesis writing.
DOI: 10.5281/zenodo.6473455
title: Electric Motor Vibrations Dataset

description: <strong>Scope:</strong> This repository contains data provided by vibrations sensor that can be used in designing and testing ML algorithms for general classification problems or more specific one such as predictive maintenance. <strong>Source of the data:</strong> Data were obtained in the framework of CHIST-ERA SOON project with the aim of testing machine learning predictive maintenance algorithms. <strong>Special remarks:</strong> Each file name codes how the data was obtained and and implicitly the data label. In experiment were used two electrical motors named m1 and m2, where <em>m1</em> is the tested motor and <em>m2</em> is a second motor for obtaining a more complex testing environment (eg. supplemental noise source).
DOI: 10.6084/m9.figshare.25152032
title: <b>Genome annotation of multidrug resistant </b><b><i>Klebsiella pneumoniae </i></b><b>subsp</b><b><i>. pneumoniae</i></b><b> isolated from cow milk, Nigeria</b>

description: The study aimed to reveal the microbial composition of raw milk from dairy camel, cow, and goat in North-western Nigeria. DNA metabarcoding was used to compare microbial compositions in raw milk among the three species. Traditional microbiological methods were used for the isolation of selected genera and Whole genome sequencing was done on selected species of interest. The genome annotation of <i>Klebsiella pneumoniae subsp. pneumoniae</i> is shared here
DOI: 10.6084/m9.figshare.27241077
title: Supplementary Material for: Predictive value of serum hepcidin levels for the risk of incident end-stage kidney disease in patients with chronic kidney disease: The KNOW-CKD

description: Introduction: Despite the pivotal role of hepcidin in the development of anemia among the patients with chronic kidney disease (CKD), the association between serum hepcidin levels and CKD progression has been never investigated. We here hypothesized that elevation in serum hepcidin levels might be associated with the risk of incident end-stage kidney disease (ESKD) among the patients with pre-dialysis CKD. 
Methods: A total of 2,109 patients with pre-dialysis CKD at stages 1 to pre-dialysis 5 were categorized into the quartiles by serum hepcidin levels. The study outcome was incident ESKD. The median duration of follow-up was 7.9 years.
Results: The analysis of the baseline characteristics revealed that unfavorable clinical features were in general associated with higher serum hepcidin levels. The cumulative incidence of ESKD was significantly differed by serum hepcidin levels, with the highest incidence in the 4th quartile (P &lt; 0.001, by log-rank test). Cox regression analysis demonstrated that, compared to the 1st quartile, the risk of incident ESKD is significantly increased in the 4th quartile (adjusted hazard ratio 1.372, 95% confidence interval 1.070 to 1.759). Penalized spline curve analysis illustrated a linear, positive correlation between serum hepcidin levels and the risk of incident ESKD. Subgroup analyses revealed that the association is significantly more prominent in the patients with advanced CKD (i.e., estimated glomerular filtration rate &lt; 45 mL/min/1.73 m2).
Conclusion: Elevation in serum hepcidin levels is significantly associated with the risk of incident ESKD among the patients with pre-dialysis CKD.
DOI: 10.6084/m9.figshare.27684735
title: Supplementary Material for: Identification of risk factors associated with metabolic dysfunction-associated steatotic liver disease in psoriatic patients

description: Introduction. Metabolic dysfunction-associated steatotic liver disease (MASLD) is a common cause of chronic liver disease. Patients suffering from psoriasis are at an increased risk of developing MASLD. Psoriasis and MASLD share a pro-inflammatory cytokine milieu, however it is still unclear whether these conditions are related through shared metainflammatory processes or shared comorbidities such as obesity, diabetes, insulin resistance and metabolic syndrome. The aim of our study was to better characterise the anthropometric and metabolic profile of psoriatic patients with MASLD. 
Methods. We conducted a prospective, single centre, cross-sectional study between June 2014 and August 2017. Recruitment was restricted to adult patients with psoriasis. Blood analysis, liver ultrasonography and a fibroscan were performed. Blood investigations, baseline anthropometric measurements and components of fatty liver disease (hepatic ultrasound, fibroscan) were assessed.
Results. 100 patients were recruited. Of which, 43% (65.1% men, n=28) were diagnosed with MASLD. The mean body mass index (BMI) was significantly higher in MASLD than in non-MASLD (27.7kg/m2 vs 30.1kg/m2, p=&lt;0.001). The mean waist circumference in MASLD patients was significantly higher than in non-MASLD patients (105.6cm vs 97.2cm, p=0.005). There was no significant difference between the mean age of both patient groups (50.4 vs 47.3 years, p=0.26). Psoriatic arthritis was more prevalent in MASLD than in the non-MASLD group (14.3% vs 1.8%, p=0.004). Biochemical analysis revealed significantly higher C-peptide level in patients with MASLD compared with patients without MASLD (2.5 vs 1.6ng/ml, p=0.036). Moreover, MASLD patients were found to have a lower HDL level and higher glycemia, triglyceridemia, cholesterol and LDL levels than non-MASLD patients. 16.3% of patients with MASLD had fibrosis stage ranging from F2 to F4 based on liver stiffness measurement compared with only 10.6% of patients without MASLD. 
Discussion. We identified parameters which were more prevalent in patients with psoriasis having MASLD, specifically a high BMI, elevated triglycerides levels, decreased HDL levels and an elevate level of C-peptide. Patients with psoriasis and MASLD were more likely to suffer from co-morbid psoriatic arthritis, despite having similar psoriasis disease severity as measured by PASI. 
Conclusion. This study highlights the importance of screening patients with psoriasis for MASLD to prevent the progression to liver fibrosis.
DOI: 10.15468/dl.kj3p9k
title: Occurrence Download

description: A dataset containing 2149 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ludwigia repens J.R.Forst."
 ]
}

 The dataset includes 2149 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019510-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbdcwh
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Crocodylus siamensis Schneider, 1801"
 ]
}

 The dataset includes 57 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019512-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvfrfv
title: Occurrence Download

description: A dataset containing 16237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "TaxonKey is Aix galericulata (Linnaeus, 1758)",
 "Year 2004-2024"
 ]
}

 The dataset includes 16237 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019514-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vuy7a3
title: Occurrence Download

description: A dataset containing 448 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ludwigia uruguayensis (Cambess.) H.Hara"
 ]
}

 The dataset includes 448 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019515-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.de56gp
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dixonius kaweesaki Sumontha, Chomngam, Phanamphon, Pawangkhanant, Viriyapanon, Thanaprayotsak & Pauwels, 2017"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019517-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7by5c
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Tarebia granifera (Lamarck, 1816)"
 ]
}

 The dataset includes 182 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019519-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3v89wf
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Projet de centrale solaire flottante sur la commune de Leyritz-Moncassin (47) - Données environnementales du projet photovoltaïque de Leyritz-Moncassin",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 49 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226969-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gdxywz
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is RUS.2_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Gymnospermium altaicum (Pall.) Spach"
 ]
}

 The dataset includes 96 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248727-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9eq78
title: Occurrence Download

description: A dataset listing the 415 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Finds of rare species of animals in Ukraine (2022)"
 ]
}

 The dataset's 415 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226955-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcacxp
title: Occurrence Download

description: A dataset containing 3403 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spartina patens (Aiton) Muhl."
 ]
}

 The dataset includes 3403 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248733-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.de94zh
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepanthes rafaeliana Pupulin"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007138-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b2turj
title: Occurrence Download

description: A dataset containing 980 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is POL",
 "TaxonKey is Bombus terrestris (Linnaeus, 1758)"
 ]
}

 The dataset includes 980 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248777-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hara25
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Congo, Democratic Republic of the",
 "OccurrenceStatus is Present",
 "TaxonKey is Citrus ×limon (L.) Burm.fil."
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007889-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hd92u3
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geranium brycei N.E.Br."
 ]
}

 The dataset includes 53 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226966-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.az8sz7
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Treubiales",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256719-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpmt3x
title: Occurrence Download

description: A dataset containing 371 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geranium linearilobum DC."
 ]
}

 The dataset includes 371 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226917-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cekcfc
title: Occurrence Download

description: A dataset listing the 42984 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mammalia"
 ]
}

 The dataset's 42984 records were derived from 8713 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248739-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.