cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.v4h4h3
title: Occurrence Download

description: A dataset containing 1218575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-31.565747 48.58410666666667, 2.479608666666667 48.58410666666667, 2.479608666666667 65.67073733333334, -31.565747 65.67073733333334, -31.565747 48.58410666666667))",
 "EventDate is 2013-07-01,2013-07-31"
 ]
}

 The dataset includes 1218575 records from 588 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025678-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3816454_d1.v1
title: Additional file 1: of Evidence of lower oxygen reserves during labour in the growth restricted human foetus: a retrospective study

description: “Cases”, “Birthweight &lt;3 centile”, “Birthweight &gt;3
DOI: 10.6084/m9.figshare.c.3816454_d1
title: Additional file 1: of Evidence of lower oxygen reserves during labour in the growth restricted human foetus: a retrospective study

description: “Cases”, “Birthweight &lt;3 centile”, “Birthweight &gt;3
DOI: 10.6084/m9.figshare.25007099
title: Exploring the efficacy of <i>Phyllanthus emblica</i> L. based on association rule mining and multidimensional analysis

description: <i>Phyllanthus emblica</i> L. (P. <i>emblica</i> L.) is a widely consumed healthy fruit known for its taste and benefits. This study used association rule mining to demonstrate its anticancer properties, analyzing its 65 chemical components, 1767 related targets, and 4282 efficacy items. Myricetin was identified as a key component targeting CA2, which is involved in cancer pathways. The research suggested P. <i>emblica</i> L.’s potential against non-small cell lung cancer and esophageal cancer, which was supported by experiments showing significant growth inhibition in related cancer cells. This approach offers a more targeted and convincing understanding of P. <i>emblica</i> L.’s effects, improving upon traditional food research methods.
DOI: 10.6084/m9.figshare.25007099.v1
title: Exploring the efficacy of <i>Phyllanthus emblica</i> L. based on association rule mining and multidimensional analysis

description: <i>Phyllanthus emblica</i> L. (P. <i>emblica</i> L.) is a widely consumed healthy fruit known for its taste and benefits. This study used association rule mining to demonstrate its anticancer properties, analyzing its 65 chemical components, 1767 related targets, and 4282 efficacy items. Myricetin was identified as a key component targeting CA2, which is involved in cancer pathways. The research suggested P. <i>emblica</i> L.’s potential against non-small cell lung cancer and esophageal cancer, which was supported by experiments showing significant growth inhibition in related cancer cells. This approach offers a more targeted and convincing understanding of P. <i>emblica</i> L.’s effects, improving upon traditional food research methods.
DOI: 10.15468/dl.fg4p69
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Careproctus ovigerus (Gilbert, 1896)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039242-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25718520
title: Composting manure in the poultry farm harbours multidrug-resistance <i>Salmonella</i>

description: <i>Salmonella</i> is one of the leading foodborne pathogens that cause gastroenteritis. It is imperative to monitor <i>Salmonella</i> contamination within poultry farms. This study focuses on the prevalence of <i>Salmonella</i> in composting manure at poultry farms a potential and persistent contamination sources. A batch of manure samples (<i>n</i> = 10) were collected from a local poultry farm, and half of the manure samples were detected to be <i>Salmonella</i>-positive. Serotyping results showed four serotypes among different isolated strains, including Typhimurium, Typhi, Newport, and Dublin. Isolates from manure generally demonstrated a high ciprofloxacin resistance and biofilm formation capacity. Multi-drug resistance was found in isolates from organic manure that had been fermented using high-temperature aerobic technology. Our study indicated that composting manure harboured <i>Salmonella</i> and might facilitate the transmission of <i>Salmonella</i> and the development of antimicrobial resistance. Proper composting strategies are needed to reduce the transmission of antimicrobial resistance and <i>Salmonella</i>.
DOI: 10.6084/m9.figshare.25718520.v1
title: Composting manure in the poultry farm harbours multidrug-resistance <i>Salmonella</i>

description: <i>Salmonella</i> is one of the leading foodborne pathogens that cause gastroenteritis. It is imperative to monitor <i>Salmonella</i> contamination within poultry farms. This study focuses on the prevalence of <i>Salmonella</i> in composting manure at poultry farms a potential and persistent contamination sources. A batch of manure samples (<i>n</i> = 10) were collected from a local poultry farm, and half of the manure samples were detected to be <i>Salmonella</i>-positive. Serotyping results showed four serotypes among different isolated strains, including Typhimurium, Typhi, Newport, and Dublin. Isolates from manure generally demonstrated a high ciprofloxacin resistance and biofilm formation capacity. Multi-drug resistance was found in isolates from organic manure that had been fermented using high-temperature aerobic technology. Our study indicated that composting manure harboured <i>Salmonella</i> and might facilitate the transmission of <i>Salmonella</i> and the development of antimicrobial resistance. Proper composting strategies are needed to reduce the transmission of antimicrobial resistance and <i>Salmonella</i>.
DOI: 10.6084/m9.figshare.c.3817594_d2.v1
title: MOESM2 of 
                     Trichoderma reesei complete genome sequence, repeat-induced point mutation, and partitioning of CAZyme gene clusters

description: Additional file 2: Table B1. Genome annotation of the complete QM6a genomes, including AT-rich blocks, predicted genes, repetitive features, gene ontology (GO), gene names in T. reesei, Saccharomycetes cerevisiae and Neurospora crassa, as well as gene identity numbers in QM6a-v2.0 and RUT-C30-v1.0. (Columns A-H) All the genes that were not annotated in QM6a-v.20 and Rut-C30-v1.0 are highlighted with yellow background, whereas those only annotated in Rut-C30-v1.0 are highlighted with yellow-green background. (Columns O-AE) Comparative transcriptomic analysis of all QM6a genes in different carbon sources using two published transcriptome datasets: (1) The SOLiD sequencing reads from QM9a grown first in glucose for 48 hours, then in straw for 24 hours and finally with the addition of glucose for 5 hours [24]; (2) The Illumina HiSeq 2000 sequencing reads from QM9414 treated with cellulose (24, 48 and 72 hours), sophorose (2, 4 and 6 hours) and glucose (24 and 48 hours) [25]. The TPM values are shown. Table B2. Annotation of the complete QM6a genome. All the annotated QM6a genes are compared to those in QM6a-v2.0, Rut-C30-v1.0, all Trichoderma reesei proteins from NCBI, the QM6a-HiC annotation results by Druzhinina et al. [18], the annotation results by Schmoll et al. [4], as well as the BLAST results from Uniprot, NCBI non-redundant (nr) database, Fusarium fujikuroi (JGI), Sordaria macrospora (NCBI), Saccharomyces cerevisiae (SGD) and Schizosaccharomyces pombe (PomBase and NCBI). The e-values of all BLASTP results were &lt; 1.0 x 10-5. Table B3. TPM values of all new QM6a genes revealed by two publicly-available transcriptome datasets [24, 25]. Table B4. Locations of 62 previously identified CAZyme and SSCP gene clusters [18] in 42 chromosomal blocks of the complete QM6a genome. All previously annotated QM6a-v2.0 or QM6a-HiC genes in these gene clusters are indicated in blue. AT-rich islands in these 42 chromosomal blocks are indicated in red. All new QM6a genes we identified in the complete QM6a genome are indicated in darkgreen.
DOI: 10.6084/m9.figshare.c.3817594_d2
title: MOESM2 of 
                     Trichoderma reesei complete genome sequence, repeat-induced point mutation, and partitioning of CAZyme gene clusters

description: Additional file 2: Table B1. Genome annotation of the complete QM6a genomes, including AT-rich blocks, predicted genes, repetitive features, gene ontology (GO), gene names in T. reesei, Saccharomycetes cerevisiae and Neurospora crassa, as well as gene identity numbers in QM6a-v2.0 and RUT-C30-v1.0. (Columns A-H) All the genes that were not annotated in QM6a-v.20 and Rut-C30-v1.0 are highlighted with yellow background, whereas those only annotated in Rut-C30-v1.0 are highlighted with yellow-green background. (Columns O-AE) Comparative transcriptomic analysis of all QM6a genes in different carbon sources using two published transcriptome datasets: (1) The SOLiD sequencing reads from QM9a grown first in glucose for 48 hours, then in straw for 24 hours and finally with the addition of glucose for 5 hours [24]; (2) The Illumina HiSeq 2000 sequencing reads from QM9414 treated with cellulose (24, 48 and 72 hours), sophorose (2, 4 and 6 hours) and glucose (24 and 48 hours) [25]. The TPM values are shown. Table B2. Annotation of the complete QM6a genome. All the annotated QM6a genes are compared to those in QM6a-v2.0, Rut-C30-v1.0, all Trichoderma reesei proteins from NCBI, the QM6a-HiC annotation results by Druzhinina et al. [18], the annotation results by Schmoll et al. [4], as well as the BLAST results from Uniprot, NCBI non-redundant (nr) database, Fusarium fujikuroi (JGI), Sordaria macrospora (NCBI), Saccharomyces cerevisiae (SGD) and Schizosaccharomyces pombe (PomBase and NCBI). The e-values of all BLASTP results were &lt; 1.0 x 10-5. Table B3. TPM values of all new QM6a genes revealed by two publicly-available transcriptome datasets [24, 25]. Table B4. Locations of 62 previously identified CAZyme and SSCP gene clusters [18] in 42 chromosomal blocks of the complete QM6a genome. All previously annotated QM6a-v2.0 or QM6a-HiC genes in these gene clusters are indicated in blue. AT-rich islands in these 42 chromosomal blocks are indicated in red. All new QM6a genes we identified in the complete QM6a genome are indicated in darkgreen.
DOI: 10.6084/m9.figshare.c.3817594_d3.v1
title: MOESM3 of 
                     Trichoderma reesei complete genome sequence, repeat-induced point mutation, and partitioning of CAZyme gene clusters

description: Additional file 3: Table C1. Straw-induced QM6a-v2.0 genes identified by Ries et al. [24] and their TPM values. Table C2. Straw-induced QM6a-v2.0 genes not identified by Ries et al. [24] and their TPM values. Table C3. New QM6a genes that are highly induced (â Ľ 20-fold) by straw and their TPM values. Table C4. New QM6a genes that are significantly induced (5-20-fold) by straw and their TPM values. Table C4. Two new QM6a genes that are highly induced by cellulose and their TPM values. Table C5. Nine new genes having higher TPM values in QM6a than in QM9414. Table C6. Centromere-encoded genes and their TPMs in QM9414.
DOI: 10.6084/m9.figshare.c.3817594_d3
title: MOESM3 of 
                     Trichoderma reesei complete genome sequence, repeat-induced point mutation, and partitioning of CAZyme gene clusters

description: Additional file 3: Table C1. Straw-induced QM6a-v2.0 genes identified by Ries et al. [24] and their TPM values. Table C2. Straw-induced QM6a-v2.0 genes not identified by Ries et al. [24] and their TPM values. Table C3. New QM6a genes that are highly induced (â Ľ 20-fold) by straw and their TPM values. Table C4. New QM6a genes that are significantly induced (5-20-fold) by straw and their TPM values. Table C4. Two new QM6a genes that are highly induced by cellulose and their TPM values. Table C5. Nine new genes having higher TPM values in QM6a than in QM9414. Table C6. Centromere-encoded genes and their TPMs in QM9414.
DOI: 10.6084/m9.figshare.c.3817663_d7.v1
title: Additional file 7: of Nanobodies raised against monomeric É -synuclein inhibit fibril formation and destabilize toxic oligomeric species

description: Supporting Data Values. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3817663_d7
title: Additional file 7: of Nanobodies raised against monomeric É -synuclein inhibit fibril formation and destabilize toxic oligomeric species

description: Supporting Data Values. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3817975_d2.v1
title: Additional file 2: Table S1. of Prevalence, incidence and carrier frequency of 5q–linked spinal muscular atrophy – a literature review

description: Overview carrier frequencies of SMA. (XLS 94 kb)
DOI: 10.6084/m9.figshare.c.3817975_d2
title: Additional file 2: Table S1. of Prevalence, incidence and carrier frequency of 5q–linked spinal muscular atrophy – a literature review

description: Overview carrier frequencies of SMA. (XLS 94 kb)
DOI: 10.15468/dl.y8he9n
title: Occurrence Download

description: A dataset containing 255 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Careproctus reinhardti (Krøyer, 1862)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 255 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039243-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3818047_d3
title: Additional file 3: Table S3. of Comparative genomics shows that viral integrations are abundant and express piRNAs in the arboviral vectors Aedes aegypti and Aedes albopictus

description: Description of all identified NIRVS (XLSX 132 kb)
DOI: 10.6084/m9.figshare.c.3818041_d4.v1
title: MOESM4 of 
                     Drosophila CP190- and dCTCF-mediated enhancer blocking is augmented by SUMOylation

description: Additional file 4: Table S2. Flag-SUMO and CP190 staining after luc or after Smt3 knockdown. Analyses of CP190 intensity maxima as well as determination of FLAG-dSUMO signal intensity were performed with Fiji, the image processing package of ImageJ. FLAG-dSUMO signal intensity measured by integrated density was background-corrected.
DOI: 10.6084/m9.figshare.c.3818041_d4
title: MOESM4 of 
                     Drosophila CP190- and dCTCF-mediated enhancer blocking is augmented by SUMOylation

description: Additional file 4: Table S2. Flag-SUMO and CP190 staining after luc or after Smt3 knockdown. Analyses of CP190 intensity maxima as well as determination of FLAG-dSUMO signal intensity were performed with Fiji, the image processing package of ImageJ. FLAG-dSUMO signal intensity measured by integrated density was background-corrected.
DOI: 10.6084/m9.figshare.c.3818068_d1.v1
title: Additional file 1 of Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production

description: CDS. New set of CDS of N. salina used for the reconstruction of iNS934. (FAA 6584 kb)
DOI: 10.6084/m9.figshare.c.3818068_d1
title: Additional file 1 of Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production

description: CDS. New set of CDS of N. salina used for the reconstruction of iNS934. (FAA 6584 kb)
DOI: 10.6084/m9.figshare.c.3818041_d5.v1
title: MOESM5 of 
                     Drosophila CP190- and dCTCF-mediated enhancer blocking is augmented by SUMOylation

description: Additional file 5: Table S3. Flag-SUMO and CP190 staining after luc or after Aos/Uba2 knock down. Analyses of CP190 intensity maxima as well as determination of FLAG-dSUMO signal intensity were performed with Fiji, the image processing package of ImageJ. FLAG-dSUMO signal intensity measured by integrated density was background-corrected.
DOI: 10.6084/m9.figshare.c.3818110_d3.v1
title: Additional file 3: Table S2. of Comparative analysis of gut microbiota associated with body mass index in a large Korean cohort

description: PICRUSt predicted list of KEGG hierarchical level 3 categories in parent hierarchical level 1 by multiple group comparison. Only significant data of adjusted P-value were included. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3818110_d3
title: Additional file 3: Table S2. of Comparative analysis of gut microbiota associated with body mass index in a large Korean cohort

description: PICRUSt predicted list of KEGG hierarchical level 3 categories in parent hierarchical level 1 by multiple group comparison. Only significant data of adjusted P-value were included. (XLSX 17Â kb)
DOI: 10.5281/zenodo.14514459
title: Dataset of "MOF-74(M) (M = Mg(II), Fe(II), Ni(II)) Frameworks to Enable Accelerated Redox Kinetics for Li-S Batteries"

description: The MOF-74 structures, incorporating Ni(II), Mg(II), and Fe(II) metal ions, were synthesized via a solvothermal method and used to encapsulate sulphur. The microporous nature of MOF-74 facilitates the physical confinement and storage of sulphur, potentially enhancing the performance of Li-S batteries. The investigation focuses on how different central metal ions in MOF-74 influence the conductivity and chemical confinement of sulphur. Overall, the results highlight that MOF-74(Ni) offers the most promising performance due to its effective sulphur immobilization and superior electrochemical properties compared to MOF-74(Mg) and MOF-74(Fe).
DOI: 10.5281/zenodo.14514460
title: Dataset of "MOF-74(M) (M = Mg(II), Fe(II), Ni(II)) Frameworks to Enable Accelerated Redox Kinetics for Li-S Batteries"

description: The MOF-74 structures, incorporating Ni(II), Mg(II), and Fe(II) metal ions, were synthesized via a solvothermal method and used to encapsulate sulphur. The microporous nature of MOF-74 facilitates the physical confinement and storage of sulphur, potentially enhancing the performance of Li-S batteries. The investigation focuses on how different central metal ions in MOF-74 influence the conductivity and chemical confinement of sulphur. Overall, the results highlight that MOF-74(Ni) offers the most promising performance due to its effective sulphur immobilization and superior electrochemical properties compared to MOF-74(Mg) and MOF-74(Fe).
DOI: 10.6084/m9.figshare.c.3819202_d4
title: Additional file 3: of Transcriptomic profiling provides molecular insights into hydrogen peroxide-induced adventitious rooting in mung bean seedlings

description: List of down-regulated genes in the 6-h hydrogen peroxide treatment. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3819202_d5.v1
title: Additional file 4: of Transcriptomic profiling provides molecular insights into hydrogen peroxide-induced adventitious rooting in mung bean seedlings

description: List of up-regulated genes in the 24-h hydrogen peroxide treatment. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.c.3819202_d5
title: Additional file 4: of Transcriptomic profiling provides molecular insights into hydrogen peroxide-induced adventitious rooting in mung bean seedlings

description: List of up-regulated genes in the 24-h hydrogen peroxide treatment. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.c.3819214_d3.v1
title: Additional file 3: of CpG promoter methylation of the ALKBH3 alkylation repair gene in breast cancer

description: ALKBH3 methylation analysed with respect to prognostic parameters (breast cancer subtype, histological grade, tumour size and nodal status). (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3819214_d3
title: Additional file 3: of CpG promoter methylation of the ALKBH3 alkylation repair gene in breast cancer

description: ALKBH3 methylation analysed with respect to prognostic parameters (breast cancer subtype, histological grade, tumour size and nodal status). (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3819202_d6.v1
title: Additional file 5: of Transcriptomic profiling provides molecular insights into hydrogen peroxide-induced adventitious rooting in mung bean seedlings

description: List of down-regulated genes in the 24-h hydrogen peroxide treatment. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3819202_d6
title: Additional file 5: of Transcriptomic profiling provides molecular insights into hydrogen peroxide-induced adventitious rooting in mung bean seedlings

description: List of down-regulated genes in the 24-h hydrogen peroxide treatment. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3819202_d7.v1
title: Additional file 6: of Transcriptomic profiling provides molecular insights into hydrogen peroxide-induced adventitious rooting in mung bean seedlings

description: List of up-regulated genes between the 24-h hydrogen peroxide treatment and the 6-h treatment. (XLSX 95Â kb)
DOI: 10.15468/dl.7nfqej
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caristius macropus (Bellotti, 1903)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039245-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3819259_d6.v1
title: Additional file 6: of Impact of novel SNPs identified in Cynara cardunculus genes on functionality of proteins regulating phenylpropanoid pathway and their association with biological activities

description: Dataset supporting the conclusions of this article. (XLSX 75 kb)
DOI: 10.6084/m9.figshare.c.3819286_d1.v1
title: Additional file 10: of Understanding the response to endurance exercise using a systems biology approach: combining blood metabolomics, transcriptomics and miRNomics in horses

description: Enriched metabolites. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3819259_d6
title: Additional file 6: of Impact of novel SNPs identified in Cynara cardunculus genes on functionality of proteins regulating phenylpropanoid pathway and their association with biological activities

description: Dataset supporting the conclusions of this article. (XLSX 75 kb)
DOI: 10.6084/m9.figshare.c.3819286_d1
title: Additional file 10: of Understanding the response to endurance exercise using a systems biology approach: combining blood metabolomics, transcriptomics and miRNomics in horses

description: Enriched metabolites. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3819259_d8.v1
title: Additional file 8: of Impact of novel SNPs identified in Cynara cardunculus genes on functionality of proteins regulating phenylpropanoid pathway and their association with biological activities

description: Individuals HQT sequences. (FAS 162 kb)
DOI: 10.6084/m9.figshare.c.3819259_d7.v1
title: Additional file 7: of Impact of novel SNPs identified in Cynara cardunculus genes on functionality of proteins regulating phenylpropanoid pathway and their association with biological activities

description: Individuals C3′H sequences. (FAS 189 kb)
DOI: 10.6084/m9.figshare.c.3819286_d2.v1
title: Additional file 11: of Understanding the response to endurance exercise using a systems biology approach: combining blood metabolomics, transcriptomics and miRNomics in horses

description: RIF scores according to RIF1 or RIF2 for transcription factors and miRNAs. Only molecules with RIF z-scores  1.40 are described. (XLS 52 kb)