cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.35077/age-how
title: Female_4_5to6_days_anterior_2: Image stack of a wild type Canton S fly head (anterior)

description: Image stacks of wild type Canton S fly heads using white light illumination. These images were used to classify and quantify the head bristles (mechanosensory structures). The processed images are published in Figure 1 and Figure 1 – figure supplements 1-2 of the manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”. The stacks used to produce these images are organized based on gender, individual (e.g. Fly_1 and Fly_2), and head orientation (e.g. anterior and posterior).
description: A full protocol describing this work is available in the associated manuscript at manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”.
description: DATASET METADATA: title:'Female_4_5to6_days_anterior_2: Image stack of a wild type Canton S fly head (anterior)', GeneralModality:'other', Technique:'other', Other:'bright field' SPECIMEN METADATA: LocalID:'Female_4_5to6_days_anterior_2', Species:'Fruit fly', NCBITaxonomy:'NCBI:txid7227', Age:'5 to 6', Ageunit:'Days', Sex:'Female', Genotype:'Canton S (wild type)', OrganName:'Peripheral', SampleLocalID:'Female_4_5to6_days_anterior_2', Locations:'Peripheral' INSTRUMENT METADATA: MicroscopeType:'Confocal', MicroscopeManufacturerAndModel:'Zeiss Axio Examiner D1', ObjectiveName:'Zeiss 10x objective (Achroplan 10x/0.25) ', ObjectiveNA:'0.25', ObjectiveMagnification:'10x' IMAGE METADATA: xAxis:'left-to-right', yAxis:'left-to-right', zAxis:'left-to-right', Number:'white', displayColor:'white', stepSizeX:'0.432129', stepSizeY:'0.432129'
DOI: 10.5281/zenodo.7570166
title: T Cell Data For AD Study-Grayson et al

description: These are the flow data frames for Figure 2
DOI: 10.5281/zenodo.7551341
title: T Cell Data For AD Study-Grayson et al

description: These are the flow data frames for Figure 2
DOI: 10.6084/m9.figshare.24018600
title: Dataset S1

description: Data and code required to reproduce the results and figures in "Putting a new spin on insect jumping performance using 3D modeling and computer simulations of spotted lanternfly nymphs"
DOI: 10.25592/uhhfdm.13168
title: Post-retrieval stress impairs subsequent memory depending on hippocampal memory trace reinstatement during reactivation

description: Stress after retrieval can impair future remembering. These memory impairments may be attributed to a weakening of the original memory during reactivation-dependent reconsolidation or to the creation of competitive memory traces that can interfere with future retrieval. Although reconsolidation and interference theories predict forgetting, the neural mechanisms underlying potentially disruptive effects of post-retrieval stress on future remembering are completely unknown. Here, we used a three-day paradigm in which participants underwent functional MRI scanning during initial encoding of word-picture pairs (Day1), partial reactivation of these pairs shortly before a stress or control manipulation (Day 2), and a final cued-recall test (Day 3). Our results show that post-reactivation stress impairs subsequent memory depending on the strength of neural reinstatement of the memory trace during reactivation, as reflected in category-level reinstatement in ventrotemporal cortex (VTC), trial-wise hippocampal encoding-retrieval similarity and the connectivity of the hippocampus with the posterior cingulate cortex (PCC). Moreover, comparison of Day1 to Day3 memory representations in the PCC revealed that successful Day 3 recall was linked to Day1-Day3 pattern dissimilarity in controls, suggesting the use of a different trace, whereas stressed participants relied on the original memory representation. These neural representation changes were again dependent on VTC reinstatement during reactivation. Together, our findings suggest that the impairing effects of post-retrieval stress on future memory relate to the strength of reactivation of the original memory trace, driven by the hippocampus and its crosstalk with neocortical representation areas, revealing disruptive effects on the formation of multiple memory traces.
DOI: 10.25592/uhhfdm.13167
title: Post-retrieval stress impairs subsequent memory depending on hippocampal memory trace reinstatement during reactivation

description: Stress after retrieval can impair future remembering. These memory impairments may be attributed to a weakening of the original memory during reactivation-dependent reconsolidation or to the creation of competitive memory traces that can interfere with future retrieval. Although reconsolidation and interference theories predict forgetting, the neural mechanisms underlying potentially disruptive effects of post-retrieval stress on future remembering are completely unknown. Here, we used a three-day paradigm in which participants underwent functional MRI scanning during initial encoding of word-picture pairs (Day1), partial reactivation of these pairs shortly before a stress or control manipulation (Day 2), and a final cued-recall test (Day 3). Our results show that post-reactivation stress impairs subsequent memory depending on the strength of neural reinstatement of the memory trace during reactivation, as reflected in category-level reinstatement in ventrotemporal cortex (VTC), trial-wise hippocampal encoding-retrieval similarity and the connectivity of the hippocampus with the posterior cingulate cortex (PCC). Moreover, comparison of Day1 to Day3 memory representations in the PCC revealed that successful Day 3 recall was linked to Day1-Day3 pattern dissimilarity in controls, suggesting the use of a different trace, whereas stressed participants relied on the original memory representation. These neural representation changes were again dependent on VTC reinstatement during reactivation. Together, our findings suggest that the impairing effects of post-retrieval stress on future memory relate to the strength of reactivation of the original memory trace, driven by the hippocampus and its crosstalk with neocortical representation areas, revealing disruptive effects on the formation of multiple memory traces.
DOI: 10.25592/uhhfdm.13187
title: Post-retrieval stress impairs subsequent memory depending on hippocampal memory trace reinstatement during reactivation

description: Stress after retrieval can impair future remembering. These memory impairments may be attributed to a weakening of the original memory during reactivation-dependent reconsolidation or to the creation of competitive memory traces that can interfere with future retrieval. Although reconsolidation and interference theories predict forgetting, the neural mechanisms underlying potentially disruptive effects of post-retrieval stress on future remembering are completely unknown. Here, we used a three-day paradigm in which participants underwent functional MRI scanning during initial encoding of word-picture pairs (Day1), partial reactivation of these pairs shortly before a stress or control manipulation (Day 2), and a final cued-recall test (Day 3). Our results show that post-reactivation stress impairs subsequent memory depending on the strength of neural reinstatement of the memory trace during reactivation, as reflected in category-level reinstatement in ventrotemporal cortex (VTC), trial-wise hippocampal encoding-retrieval similarity and the connectivity of the hippocampus with the posterior cingulate cortex (PCC). Moreover, comparison of Day1 to Day3 memory representations in the PCC revealed that successful Day 3 recall was linked to Day1-Day3 pattern dissimilarity in controls, suggesting the use of a different trace, whereas stressed participants relied on the original memory representation. These neural representation changes were again dependent on VTC reinstatement during reactivation. Together, our findings suggest that the impairing effects of post-retrieval stress on future memory relate to the strength of reactivation of the original memory trace, driven by the hippocampus and its crosstalk with neocortical representation areas, revealing disruptive effects on the formation of multiple memory traces.
DOI: 10.5281/zenodo.3626768
title: Amazon and Africa Rhyssinae comparison data

description: This dataset contains the data and analyses of our paper on the relative species richness of Amazonian and African sites (link to come when published). We collected rhyssines (Ichneumonidae: Rhyssinae) by Malaise trapping in Peruvian Amazonia (Amazon 1998, 2000, 2008, 2011) and in Uganda (Uganda 2014–2015), and compared the results.<br> The script (2 Compare Ugandan and Peruvian rhyssines.R) will usually be of the greatest interest. It contains the R code used to analyse the data and create the figures in the paper.
description: Funded by the Finnish Cultural Foundation, Oskar Öflunds Stiftelse, the Helsinki Entomology Society and Waldemar von Frenckells stiftelse.
DOI: 10.6084/m9.figshare.23799390.v1
title: Source Data_Rab27am .xlsx

description: Source data file of manuscript "SMC3 epigenetic silencing regulates Rab27a expression and drives pancreatic cancer progression"
DOI: 10.6084/m9.figshare.23799390
title: Source Data_Rab27am .xlsx

description: Source data file of manuscript "SMC3 epigenetic silencing regulates Rab27a expression and drives pancreatic cancer progression"
DOI: 10.5281/zenodo.3559054
title: Amazon Malaise trapping data 1998 2000 2008 2011

description: Data on the Amazonian Malaise trapping carried out in 1998, 2000, 2008 and 2011 by the University of Turku. Flying insects were collected by Malaise traps in Peruvian Amazonia by Ilari Sääksjärvi and Isrrael Gómez. The dataset contains data on what samples were collected, on the trap sites, on the vegetation around the trap sites, and on the weather. More importantly, it contains information on how this data was compiled. There was no complete list of Amazonian Malaise samples before this, and the sample data had to be combined from multiple sources. This dataset is also described in the associated paper (link to come when published).
DOI: 10.5281/zenodo.3941033
title: Amazon Malaise trapping data 1998 2000 2008 2011

description: Data on the Amazonian Malaise trapping carried out in 1998, 2000, 2008 and 2011 by the University of Turku. Flying insects were collected by Malaise traps in Peruvian Amazonia by Ilari Sääksjärvi and Isrrael Gómez. The dataset contains data on what samples were collected, on the trap sites, on the vegetation around the trap sites, and on the weather. More importantly, it contains information on how this data was compiled. There was no complete list of Amazonian Malaise samples before this, and the sample data had to be combined from multiple sources. This dataset is also described in the associated paper (link to come when published). This is an updated version. Minor updates to files: "0 ReadMe 1 Raw data.txt" "Amazon plant list.csv" "ReadMe 3 Data.txt"
DOI: 10.5281/zenodo.4030168
title: Amazon Malaise trapping data 1998 2000 2008 2011

description: Data on the Amazonian Malaise trapping carried out in 1998, 2000, 2008 and 2011 by the University of Turku. Flying insects were collected by Malaise traps in Peruvian Amazonia by Ilari Sääksjärvi and Isrrael Gómez. The dataset contains data on what samples were collected, on the trap sites, on the vegetation around the trap sites, and on the weather. More importantly, it contains information on how this data was compiled. There was no complete list of Amazonian Malaise samples before this, and the sample data had to be combined from multiple sources. This dataset is also described in the associated paper (link to come when published). This is an updated version. Minor updates to files: "0 ReadMe 1 Raw data.txt" "Amazon plant list.csv" "ReadMe 3 Data.txt" "0 ReadMe Amazon Malaise trapping data 1998 2000 2008 2011.pdf"
DOI: 10.5517/ccdc.csd.cc2d5hbf
title: CCDC 2209814: Experimental Crystal Structure Determination

description: Related Article: Naresh Kumar Meher, Piyush Kumar Verma, K. Geetharani|2023|Org.Lett.|25|87|doi:10.1021/acs.orglett.2c03891
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2018gt
title: CCDC 1848265: Experimental Crystal Structure Determination

description: Related Article: McKenna K. Goetz, Ethan A. Hill, Alexander S. Filatov, John S. Anderson|2018|J.Am.Chem.Soc.|140|13176|doi:10.1021/jacs.8b07399
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15139/s3/corlxp
title: Relocation and Romantic Relationships - Cross-sectional, 2018-2019

description: We obtained a sample of 438 individuals, which includes 70 couples (i.e., 70 participants (16%) are partners of our primary participants). The sample consists of 208 participants who initiated the couples’ relocation to a different city, state/province, or country (i.e., relocaters), and 230 participants who accommodated their partner’s initiation to move (i.e., trailers). Participants were recruited on the online research platform Prolific and filled out a ~45 minutes survey for which they were paid $10CAD (or another currency’s equivalent) and a bonus of $2CAD if their partner participated as well. Participants were eligible when they spoke English, were over the age of 18, were currently in a romantic relationship, currently lived together with their romantic partner, and importantly, when they had relocated with their partner in the past year, which was primarily for one of the partners (e.g., to support their career opportunities). Participants ranged in age from 20 to 69 (M = 32.3, SD = 7.6), 56.4% identified as women, 43.2% as men, and 0.5% as non-binary. The majority identified as heterosexual (89.3%), with others identifying as bisexual (7.5%), lesbian (1.1%), gay (0.9%), or “other” (e.g., queer or asexual; 1.1%). Most participants identified as White (North American/European, 75.1%) and others as bi- or multi-ethnic (e.g., White/Black, 6.2%), Latin American (6.2%), South Asian (4.6%), East Asian (3%), Black (2.1%), Native American/First Nations (0.7%), or “other” (e.g., Middle Eastern, Jewish, 2.3%). All participants were living together with their partner and were in their current relationship for 8.56 (SD = 5.21) years on average. Most participants were married (95.7%), and some were dating (2.3%) or indicated “other” (e.g., engaged or in a registered partnership, 2.1%). Half of the participants had children (50.2%), with most of these having one (24.2%) or two (17.1%) children. This project was approved by the University of Toronto Mississauga research ethics board on July 20, 2018 (#36046).
DOI: 10.6084/m9.figshare.24018681
title: [Data] Patients’ subjective well-being: Determinants and its usage as a metric of healthcare service quality

description: Data for the manuscript "Patients’ subjective well-being: Determinants and its usage as a metric of healthcare service quality"
DOI: 10.6084/m9.figshare.24018681.v1
title: [Data] Patients’ subjective well-being: Determinants and its usage as a metric of healthcare service quality

description: Data for the manuscript "Patients’ subjective well-being: Determinants and its usage as a metric of healthcare service quality"
DOI: 10.15482/usda.adc/1529435
title: Data from: Flight burst duration as an indicator of flight ability and physical fitness in two species of Tephritid fruit flies

description: These data are from a study on a new method to quantify flight ability and physical fitness of individual fruit flies which we term ‘Flight Burst Duration’ (FBD). The method consisted of tethering individual insects by the dorsal thorax using a vacuum and measuring the length of time the insect beats its wings while suspended off a surface. Consecutive measurements with Bactrocera dorsalis Hendel (Dipera: Tephritidae) and Zeugodacus cucurbitae Coquillett (Diptera: Tephritidae) in the same day and across days indicated that a single measurement was sufficient, and that FBD was consistent and repeatable. Insects under stress from starvation displayed shorter FBD over time, and we suggest that the measure also relates to the physical condition or survival fitness of the individual. Though somewhat laborious and timeconsuming, we proposed that FBD can be useful for research studies requiring individual-level phenome data and for obtaining estimates quality and dispersive movement for insects.
Resources in this dataset:


Resource title: Consecutive Burst Assay data
File name: 2017-01_consecutive-data-complete-nal.csv


Resource title: Longitudinal and Nutritional Deprivation Test Data
File name: 2023-08_longitudional-nutritional-data-complete-nal.csv


Resource title: Metadata
File name: README.txt
DOI: 10.6084/m9.figshare.23726530
title: Antigenic and molecular characterization of isolates of the Brazilian genotype BR-I (GI-11) of infectious bronchitis virus supports its recognition as BR-I serotype

description: The antigenic and molecular characteristics of BR-I infectious bronchitis viruses (IBVs) isolated from Brazil are reported. IBVs isolated from commercial flocks with different clinical manifestations between 2003 and 2019 were submitted to antigenic and molecular characterization. The complete S1 glycoprotein gene of 11 field isolates was amplified and sequenced. The virus neutralization (VN) test showed 94.75% neutralization with a BR-I isolate and 30% or less against other worldwide reference strains. The nucleotide and amino acid sequence analyses revealed 84.3–100% and 83.5–100% identity among them, respectively. The identity values ranged from 57.1 to 82.6% for nucleotides and from 46.6–84.4% for amino acids compared with those of other genotypes. By phylogenetic tree analysis, the Brazilian isolates were branched into the BR-I genotype (lineage GI-11), which was differentiated from foreign reference strains. Selective pressure analyses of BR-I IBVs revealed evolution under purifying selection (negative pressure) for the complete S1 gene but four specific sites (87, 121, 279, and 542) under diversifying selection (positive pressure). Profiles of cleavage sites and potential N-glycosylation sites differed from those of other genotypes. The low molecular relationship among the Brazilian viruses and foreign serotypes was concordant with the VN test results. The low antigenic relatedness (ranging from 5.3–30% between Brazilian genotype BR-I and reference IBV serotypes of North America, Europe, and Asia) indicates that the BR-I genotype is a different serotype, referred to for the first time and hereafter as serotype BR-I. RESEARCH HIGHLIGHTSStrains of the BR-I genotype presented robust antigenic and molecular similarity.BR-I strains evolved under purifying selection mode (negative pressure).The BR-I genotype originated in Brazil and dispersed to other countries.BR-I genotype viruses can be referred to as the BR-I serotype. Strains of the BR-I genotype presented robust antigenic and molecular similarity. BR-I strains evolved under purifying selection mode (negative pressure). The BR-I genotype originated in Brazil and dispersed to other countries. BR-I genotype viruses can be referred to as the BR-I serotype.
DOI: 10.6084/m9.figshare.23726530.v1
title: Antigenic and molecular characterization of isolates of the Brazilian genotype BR-I (GI-11) of infectious bronchitis virus supports its recognition as BR-I serotype

description: The antigenic and molecular characteristics of BR-I infectious bronchitis viruses (IBVs) isolated from Brazil are reported. IBVs isolated from commercial flocks with different clinical manifestations between 2003 and 2019 were submitted to antigenic and molecular characterization. The complete S1 glycoprotein gene of 11 field isolates was amplified and sequenced. The virus neutralization (VN) test showed 94.75% neutralization with a BR-I isolate and 30% or less against other worldwide reference strains. The nucleotide and amino acid sequence analyses revealed 84.3–100% and 83.5–100% identity among them, respectively. The identity values ranged from 57.1 to 82.6% for nucleotides and from 46.6–84.4% for amino acids compared with those of other genotypes. By phylogenetic tree analysis, the Brazilian isolates were branched into the BR-I genotype (lineage GI-11), which was differentiated from foreign reference strains. Selective pressure analyses of BR-I IBVs revealed evolution under purifying selection (negative pressure) for the complete S1 gene but four specific sites (87, 121, 279, and 542) under diversifying selection (positive pressure). Profiles of cleavage sites and potential N-glycosylation sites differed from those of other genotypes. The low molecular relationship among the Brazilian viruses and foreign serotypes was concordant with the VN test results. The low antigenic relatedness (ranging from 5.3–30% between Brazilian genotype BR-I and reference IBV serotypes of North America, Europe, and Asia) indicates that the BR-I genotype is a different serotype, referred to for the first time and hereafter as serotype BR-I. RESEARCH HIGHLIGHTSStrains of the BR-I genotype presented robust antigenic and molecular similarity.BR-I strains evolved under purifying selection mode (negative pressure).The BR-I genotype originated in Brazil and dispersed to other countries.BR-I genotype viruses can be referred to as the BR-I serotype. Strains of the BR-I genotype presented robust antigenic and molecular similarity. BR-I strains evolved under purifying selection mode (negative pressure). The BR-I genotype originated in Brazil and dispersed to other countries. BR-I genotype viruses can be referred to as the BR-I serotype.