cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.x76ecv
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prosorhochmus americanus Gibson, Moore, Ruppert & Turbeville, 1986"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011839-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujky2n
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-1.9734 4.2478,-0.0352 5.0957,-0.0352 10.8496,-9.0352 10.8496,-9.0352 4.4397,-8.4168 4.1049,-7.389 3.8664,-5.7288 4.5489,-4.0108 4.7359,-1.9734 4.2478))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011841-250525065834625/datasets/export for details.
DOI: 10.15468/dl.46unat
title: Occurrence Download

description: A dataset containing 15417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cynara cardunculus L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 15417 records from 231 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011840-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mxhnrs
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prosorhochmus americanus Gibson, Moore, Ruppert & Turbeville, 1986"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011842-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76nvd6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-8.8018 33.6743,-9.0352 33.4562,-9.0352 28.8496,-0.0352 28.8496,-0.0352 36.4794,-0.2209 36.3968,-1.3537 36.1876,-1.6551 35.769,-2.0234 35.5842,-2.5138 35.6803,-2.6212 36.2387,-2.9881 36.451,-3.4424 36.249,-3.506 35.7605,-4.4004 35.671,-4.7609 35.8337,-4.8512 36.1709,-5.2296 36.4083,-6.2415 36.1841,-7.168 34.4152,-8.8018 33.6743))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011843-250525065834625/datasets/export for details.
DOI: 10.15468/dl.9dnqka
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-0.0352 28.8496,-9.0352 28.8496,-9.0352 19.8496,-0.0352 19.8496,-0.0352 28.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011845-250525065834625/datasets/export for details.
DOI: 10.15468/dl.yy4f7n
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prosorhochmus americanus Gibson, Moore, Ruppert & Turbeville, 1986"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011846-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.acaxdg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-9.5482 4.7175,-9.0352 4.4397,-9.0352 10.8496,-16.709 10.8496,-16.3297 10.5455,-15.1301 10.2973,-14.7679 9.8172,-14.3248 9.5834,-14.2456 9.1632,-13.8032 8.9309,-13.7341 8.0101,-13.3252 7.2036,-11.9532 6.6399,-11.0468 5.863,-10.545 5.6439,-9.5482 4.7175))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011847-250525065834625/datasets/export for details.
DOI: 10.15468/dl.csszdf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-16.8057 20.1434,-16.8896 19.8496,-9.0352 19.8496,-9.0352 28.8496,-11.635 28.8496,-11.7824 28.7359,-13.29 28.2942,-13.9623 27.0596,-14.8996 26.4375,-15.2884 25.5014,-15.3356 24.99,-16.4235 23.914,-16.8295 22.8081,-17.1762 22.5133,-17.4325 21.9756,-17.6012 20.7987,-17.3601 20.3805,-16.8057 20.1434))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011848-250525065834625/datasets/export for details.
DOI: 10.15468/dl.bvd29r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-16.6672 18.7728,-16.5468 17.7486,-16.9133 16.7746,-17.0265 15.925,-17.4754 15.299,-17.9607 15.0106,-18.0159 14.6088,-17.2825 13.9103,-17.2971 12.4437,-17.1163 12.0176,-16.8424 11.8396,-16.9887 11.3363,-16.91 11.0108,-16.709 10.8496,-9.0352 10.8496,-9.0352 19.8496,-16.8896 19.8496,-17.0371 19.3335,-16.6672 18.7728))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011849-250525065834625/datasets/export for details.
DOI: 10.15468/dl.atefhu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-10.6036 29.6447,-11.635 28.8496,-9.0352 28.8496,-9.0352 33.4562,-9.6631 32.8696,-9.7766 32.3158,-10.3241 31.5424,-10.3942 30.6542,-10.1716 30.2225,-10.6036 29.6447))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011851-250525065834625/datasets/export for details.
DOI: 10.15468/dl.wuxnvx
title: Occurrence Download

description: A dataset containing 88789 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rana arvalis Nilsson, 1842"
 ]
}

 The dataset includes 88789 records from 224 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011833-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.djh9w0w2n
title: Data for: Depth and temperature drive patterns of spatial overlap among fish thermal guilds in lakes across Ontario, Canada

description: Aim: As fishes are ectothermic, their spatial distributions are strongly
 dependent on the temperature of their environments. In temperate lakes,
 fishes with different thermal optima can become spatially segregated
 during summer stratification. This habitat partitioning, or niche
 complementarity, may play a role in the coexistence of trophically similar
 species; however, the extent of partitioning is dependent on the resources
 available within each habitat. Although habitat partitioning of fish
 thermal guilds has been studied in individual lakes, broad-scale patterns
 of spatial overlap and segregation are not yet understood. In this study,
 we explore the patterns and drivers of spatial overlap among thermal
 guilds (cold-, cool-, and warm-water) at a broad scale. Location: Ontario,
 Canada. Methods: We explored patterns of spatial overlap among three
 thermal guilds, estimated from standardized gillnetting, in 438 lakes. We
 used a multivariate regression tree to identify such patterns, as well as
 the environmental factors that drive these patterns. Results: We
 identified five clusters of lakes exhibiting different patterns of spatial
 overlap among the three thermal guilds. Temperature (growing degree days)
 and maximum lake depth were strong drivers of the spatial overlap
 patterns. The proportional abundance of each thermal guild was similar
 among the clusters but there was some evidence of species turnover within
 the warm-water guild. Main conclusions: These findings not only provide a
 better understanding of broad-scale patterns of spatial overlap, but also
 allow us to predict how spatial overlap, and ultimately species
 interactions and competition, may change under a warming climate.
DOI: 10.5061/dryad.bk3j9kdfc
title: Data for: Individual differences in song plasticity in response to social stimuli and singing position

description: Individual animals can react to the changes in their environment by
 exhibiting behaviours in an individual-specific way leading to individual
 differences in phenotypic plasticity. However, the effect of multiple
 environmental factors on multiple traits is rarely tested. Such a complex
 approach is necessary to assess the generality of plasticity and to
 understand how among-individual differences in the ability to adapt to
 changing environments evolve. This study examined whether individuals
 adjust different song traits to varying environmental conditions in the
 collared flycatcher (Ficedula albicollis), a passerine with complex song.
 We also aimed to reveal among-individual differences in behavioural
 responses by testing whether individual differences in plasticity were
 repeatable. The presence of general plasticity across traits and/or
 contexts was also tested. To assess plasticity, we documented 1)
 short-scale temporal changes in song traits in different social contexts
 (after exposition to male stimulus, female stimulus or without stimuli),
 and 2) changes concerning the height from where the bird sang (singing
 position), used as a proxy of predation risk and acoustic transmission
 conditions. We found population-level relationships between singing
 position and both song length and complexity, as well as social
 context-dependent temporal changes in song length and maximum frequency.
 We found among-individual differences in plasticity of song length and
 maximum frequency along both the temporal and positional gradients. These
 among-individual differences in plasticity were repeatable. Some of the
 plastic responses correlated across different song traits and
 environmental gradients. Overall, our results show that the plasticity of
 bird song 1) depends on the social context, 2) exists along different
 environmental gradients and 3) there is evidence for trade-offs between
 the responses of different traits to different environmental variables.
 Our results highlight the need to consider individual differences and to
 investigate multiple traits along multiple environmental axes when
 studying behavioural plasticity. 
description: We recorded song for 12 years in a wild population of collared
 flycatchers (<em>Ficedula albicollis</em>). We recorded songs
 after exposing the focal males to different focal contexts (displaying a
 male or female conspecific or without stimulus) and we also recorded the
 height of the position from where the bird sang. We also recorded the date
 of the measurement and the age of the focal male (1-year old or
 older).<br>From the song recordings three song traits were
 extracted: song lengt, maximum frequency and complexity for each
 song.
description: The continuous variables used in the statistical models were
 z-transformed. There are missing values in complexity,
 as for the calculation of this variable the type of each syllable should
 be known and this could not be allways determined.
DOI: 10.5061/dryad.2547d7wsm
title: Morphological measurements in a coastal Ecuadorian avifauna

description: This dataset contains measurement of six morphological variables in 3444
 individual birds. These birds were captured using mist-nets in
 the Reserva Jama-Coaque, operated by the Third Millennium Alliance,
 Manabí, Ecuador (0° 6’ 57.75” S, 80° 7’ 28.20” W)  Data were
 collected in 2018 and 2019. The variables included here are
 unflattened wing chord, length of longest retrix, bill length from nares
 to tip, bill width at nares, bill depth at nares, and weight, as described
 in Pyle (1997). Also included are measurements of elevation of the sites
 at which birds were captured, and age and sex characteristics, when these
 could be determined. 
description: Please see associated manuscript for details on data
 collection. 
description: Missing morphological data in this data set is the result of
 premature escapes.
DOI: 10.5061/dryad.ttdz08m1p
title: Data from: Synergistic use of UAV surveys, satellite tracking data and mark-recapture to estimate abundance of elusive species

description: Estimating population abundance is central to many ecological studies and
 important in conservation planning. Yet the elusive nature of many species
 makes estimating their abundance challenging. Abundance estimates of sea
 turtles, marine birds and seals are usually made when breeding adults are
 ashore, while life-stages spent at sea, including as juveniles, are often
 poorly sampled. We used a combination of high-resolution satellite
 tracking (Fastloc-GPS), Unmanned Aerial Vehicle (UAV) surveys and
 catch-mark-recapture approaches to assess abundance of immature hawksbills
 (Eretmochelys imbricata) and green turtles (Chelonia mydas) in a tidal
 lagoon of the Chagos Archipelago (Indian Ocean). We captured, marked, and
 released 50 turtles (48 hawksbill and 2 green turtles) prior to UAV
 surveys and used satellite tracking data from 27 immature turtles (25
 hawksbill and 2 green turtles) to refine the estimated numbers of marked
 turtles available for resighting and those likely to have emigrated from
 the study area. We estimated a total of 339 turtles in the lagoon with a
 density between 265 turtles km-2 at high water and 499 turtles km-2 at low
 water. Of these 84% were hawksbills and 16% were green turtles. These
 hawksbill densities are the highest reported amongst 17 foraging sites
 recorded around the world, likely reflecting successful long-term
 protection of turtles in the Chagos Archipelago.
DOI: 10.5061/dryad.2jm63xsrq
title: Byanyima et al- Feasibility and sensitivity of saliva GeneXpert MTBRIF Ultra for tuberculosis diagnosis in Ugandan adults

description: The objective of this prospective, observational study carried out at
 China-Uganda Friendship Hospital-Naguru in Kampala, Uganda, was to
 determine the performance of GeneXpert MTB/RIF Ultra (Xpert Ultra)
 molecular testing on saliva for active tuberculosis (TB) disease among
 consecutive adults undergoing TB diagnostic evaluation who
 were Xpert Ultra positive on sputum. We
 calculated sensitivity to determine TB diagnostic performance in
 comparison to a composite reference standard of Mycobacterium
 tuberculosis (Mtb) liquid and solid cultures on two spot
 sputum specimens. Xpert Ultra on a single saliva sample had
 a sensitivity of 90% (95% CI 81-95%) relative to the composite
 sputum culture-based reference standard, similar to the composite
 sensitivity of 87% (95% CI, 77-94%) fluorescence smear microscopy (FM) for
 acid-fast bacilli on two sputa. The sensitivity of salivary Xpert Ultra
 was 24% lower (95% CI for difference 2-48%, p=0.003) among persons living
 with HIV (71%, 95% CI 44-90%) than among persons living without HIV (95%,
 95% CI 86-99%) and 46% higher (95% CI 14-77%, p&lt;0.0001) among
 FM-positive (96%, 95% CI 87-99%) than among
 FM-negative patients (50%, 95% CI
 19-81%) patients. Semi-quantitative Xpert
 Ultra  grade was systematically higher in sputum than in
 a paired saliva sample from the same patient. In conclusion,
 molecular testing of saliva for active TB diagnosis was feasible and
 almost as sensitive as molecular testing of sputum in a high TB-burden
 setting.
description: Surveys were done with the index patients by the study nurses and
 data was collected using standard questionnaires to obtain clinical
 information. Case report forms used to collect the data were then double
 entered by the data entrant into an access database. Data was downloaded
 from the database in a text file format and this was imported into the
 stata 14 script. It was then prepared and cleaned and essential variables
 kept.
DOI: 10.5061/dryad.qbzkh18kk
title: Nocturnal emergence facilitated by thermally-induced hatching in the Chinese Softshell Turtle, Pelodiscus sinensis

description: The coincidence of hatching timing and emergence events with favourable
 conditions is crucial for survival. Nocturnal emergence has been widely
 documented across marine and freshwater turtles and has long been
 suggested as an adaptive behaviour that reduces risk of heat stress and
 predation. However, our knowledge of emergence timing is mainly based on
 the observation of emergence events, and whether the timing of hatching is
 influenced by diel environmental factors remains largely unknown. Herein,
 we visually monitored the activity of the Chinese softshell turtle
 (Pelodiscus sinensis)—a shallow-nesting freshwater turtle—from hatching to
 emergence. Our data demonstrated that (i) the embryos within a single nest
 exhibited synchronous hatching; in particular, (ii) their synchronous
 hatching coincided with the period of decreased nest temperature. Further
 analysis indicated that pipping was specifically more likely to occur
 during the period of rapidly decreasing nest temperatures. Together, these
 results provide strong evidence for the existence of synchronous hatching
 in this freshwater, shallow-nesting turtle species, and that the timing
 for nest emergence may have already been selected at the hatching stage.
DOI: 10.5061/dryad.fbg79cnx5
title: Monitoring genetic diversity with new indicators applied to an alpine freshwater top predator

description: Genetic diversity is the basis for population adaptation and long-term
 survival, yet rarely considered in biodiversity monitoring. One key issue
 is the need for useful and straightforward indicators of genetic
 diversity. We monitored genetic diversity over 40 years (1970-2010) in
 metapopulations of brown trout (Salmo trutta) inhabiting 27 small mountain
 lakes representing 10 lake systems in central Sweden using &gt;1200
 fish per time point. We tested six newly proposed indicators; three were
 designed for broad, international use in the UN Convention on Biological
 Diversity (CBD and are currently applied in several countries. The other
 three were recently elaborated for national use by a Swedish
 science-management effort and applied for the first time here. The Swedish
 indicators use molecular genetic data to monitor genetic diversity within
 and between populations (indicators ΔH and ΔFST, respectively) and assess
 the effective population size (Ne-indicator). We identified 29 genetically
 distinct populations, all retained over time. Twelve of the 27 lakes
 harbored more than one population indicating that brown trout biodiversity
 hidden as cryptic, sympatric populations are more common than recognized.
 The Ne indicator showed values below the threshold (Ne≤500) in 20
 populations with five showing Ne&lt;100. Statistically significant
 genetic diversity reductions occurred in several populations.
 Metapopulation structure appears to buffer against diversity loss;
 applying the indicators to metapopulations suggest mostly acceptable rates
 of change in all but one system. The CBD indicators agreed with the
 Swedish ones but provided less detail. All these indicators are
 appropriate for managers to initiate monitoring of genetic biodiversity.
description: For details, please read the article.