cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.87333
title: SI-HDR - dataset for comparison of single-image high dynamic range reconstruction methods

description: The dataset consists of 181 HDR images. Each image includes: * a RAW exposure stack (in raw.zip) * an HDR image (in reference.zip) * simulated camera images at two different exposures (in input.zip) * Results of 6 single-image HDR reconstruction methods: Endo et al. 2017, Eilertsen et al. 2017, Marnerides et al. 2018, Lee et al. 2018, Liu et al. 2020, and Santos et al. 2020 (in reconstructions.zip) See README.md for more details. Project page: https://www.cl.cam.ac.uk/research/rainbow/projects/sihdr_benchmark/
DOI: 10.6084/m9.figshare.c.3634424_d1.v1
title: MOESM6 of Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle

description: Additional file 6. Acquired antibiotic resistance genes in M. bovoculi IBK eye isolate Mb58069. Table containing the following information related to acquired antibiotic resistance genes in Mb58069: name of gene, % identity, matching accession number, position in Mb58069 genome and expected resistance phenotype.
DOI: 10.17863/cam.95044
title: Research data supporting 'Androcentric memories of enslavement, social reproduction, and racial capitalism in north-western Senegal'

description: Analysis of 100 newspaper articles related to enslavement in Senegal. These articles were published between 2010 and 2022, mostly in the Senegalese press but some also in the French press. The results of the analysis show that 55 percent of the articles presented enslaved people in masculine ways, compared to only 11 percent presenting them as women.
DOI: 10.6084/m9.figshare.c.3634424_d3.v1
title: MOESM2 of Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle

description: Additional file 2. Genome information for replicons. Table containing the following information related to each replicon: replicon type, isolate identifier, replicon size, GenBank accession number and RTX operon status. Also contained in the table are the following elemental counts: phages, CRISPRs, 16s rRNA genes, tRNA genes, the number of acquired antibiotic resistance genes and CDS counts for three genome annotation methods.
DOI: 10.6084/m9.figshare.c.3634424_d6.v1
title: MOESM7 of Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle

description: Additional file 7. Selected minimum inhibitory concentrations (MICs) for each isolate/antimicrobial combination. Table containing the following information related to MIC testing for each isolate: antimicrobial, MIC and applied interpretive criteria (susceptible, intermediate or resistant) in parenthesis.
DOI: 10.6084/m9.figshare.c.3634424_d4.v1
title: MOESM8 of Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle

description: Additional file 8. Top Mb58069 plasmid BLASTN hits. Table containing the following information related to the Mb58069 plasmid: BLAST hit, % identity, E-value and plasmid description.
DOI: 10.6084/m9.figshare.c.3634424_d5.v1
title: MOESM1 of Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle

description: Additional file 1. Isolate information. Table containing the following information related to each isolate when available: Isolate identifier, IBK eye isolates or IBK asymptomatic nasopharyngeal isolates, location, specimen type, infection characteristics and microbial phenotype. The single epidemiologically linked isolate is also noted.
DOI: 10.6084/m9.figshare.c.3634424_d8.v1
title: MOESM5 of Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle

description: Additional file 5. Pathway analysis of 129 genes from the non-homologous IBK eye core genome and 189 genes from the non-homologous IBK asymptomatic nasopharyngeal core M. bovoculi genomes. Table containing the following information related to each pathway: name, type in parentheses and class. Pathways are subdivided into those predicted to have been acquired independently, those predicted to be encoded by the IBK eye core genome and those predicted to be encoded by the IBK asymptomatic nasopharyngeal core genome.
DOI: 10.6084/m9.figshare.c.3634424_d7.v1
title: MOESM3 of Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle

description: Additional file 3. Interpretive criteria for selected antimicrobial drugs. Table containing the following information related to MIC testing: antimicrobial, concentration(s) tested and threshold criteria for susceptible, intermediate or resistant.
DOI: 10.6084/m9.figshare.c.3634439_d2.v1
title: Additional file 2: Table S1. of Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes

description: Gene Ontology terms of transcripts found in the glowworm light organ (XLSX 231Â kb)
DOI: 10.6084/m9.figshare.c.3634448_d1.v1
title: Additional file 2: Table S4. of 
                     Cryptosporidium and Giardia taxa in faecal samples from animals in catchments supplying the city of Melbourne with drinking water (2011 to 2015)

description: Pairwise comparisons of the SSU gene sequences among Cryptosporidium genotypes. Table S5. Pairwise comparisons of the gp60 gene sequences among Cryptosporidium genotypes. Table S6. Pairwise comparisons of the tpi gene sequences among Cryptosporidium genotypes. (XLSX 29 kb)
DOI: 10.15468/dl.g4tk69
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Geometry POLYGON((-74.26888 10.97315,-74.1391 11.10293,-74.25119 11.33299,-74.45175 11.20911,-74.26888 10.97315))",
 "StateProvince is one of (magdalena)",
 "TaxonKey is one of (Euglenozoa)"
 ]
 }
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037890-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3634505_d1.v1
title: Additional file 3: Table S1. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration

description: Disease groups in detail. ICD codes are shown as ordered by a RR-based hierarchical clustering; the tables includes the information of co-occurrence between COPD and the ICD9 codes selected in ICD9selected. The columns of the table denote: ICD9: the ICD9 code. GROUP: the DG the ICD9 code pertains to. NAME: the name of the ICD9 3-digit group. prevalence ICD: prevalence of ICD9 code in Medicare. common_diagnoses: prevalence of ICD9 code and COPD simultaneously. RR: COPD-ICD9 code relative risk. Φ: COPD-ICD9 code Φ. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3634505_d4.v1
title: Additional file 14: Table S3. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration

description: Pathway co-morbidity biomarkers for DG_8. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3634505_d5.v1
title: Additional file 4: Table S2. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration

description: COPD and Disease Groups by gender. For each DGs the co-occurrence of a DG and COPD is studied by gender and also the differences between genders are computed. For each gender the following columns show: prevalence ICD: prevalence of ICD9 code in Medicare. common_diagnoses: prevalence of ICD9 code and COPD simultaneously. RR: COPD-ICD9 code relative risk. Φ: COPD-ICD9 code Φ. %: the proportion of COPD individuals that also are diagnosed with DGs. Additionally differences between Male and Female are computed for RR, Φ and %. And the ratio of the differences and the Male Values. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3634505_d11.v1
title: Additional file 16: Table S7. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration

description: Data-sets selected to investigate genes in the context of aging, smoking and life-style. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3634505_d9.v1
title: Additional file 1: Table S8. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration

description: Association between genes not-associated with age, smoking or life-style and disease groups. In each cell, a 2 (1) denotes that association between gene and disease cluster was identified using mapping1_DG and mapping2_DG (only when mapping2_DG). (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3634505_d12.v1
title: Additional file 15: Tables S4, S5 and S6. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration

description: Text-mining analysis by PolySearch. set1 = (“aging”, “age”), set2 = (“smoking”,”smoke”), set3 = (“training”,”train”,”healthy life style”); the results of the queries are shown in Additional file 14: Tables S4, S5 and S6 respectively. (ZIP 97 kb)
DOI: 10.6084/m9.figshare.c.3634556_d1.v1
title: MOESM6 of Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production

description: Additional file 6: Table S5. Results for General Linear Model (GLM) analyses of effect of rs110675140 genotype on DBP, ALB, 25(OH)D2, 25(OH)D3 and total 25(OH)D; free 25(OH)D2, 25(OH)D3 and total 25(OH)D; bioavailable (i.e., free and ALB-bound) 25(OH)D2, 25(OH)D3 and total 25(OH)D; DBP-bound total 25(OH)D; and ALB-bound total 25(OH)D serum concentrations. Detailed results of GLM analyses of genotype effect on several serum protein levels in 50 NR cows.
DOI: 10.6084/m9.figshare.c.3634556_d2.v1
title: MOESM4 of Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production

description: Additional file 4: Table S3. Results for single marker association analyses of seven mastitis traits and five milk traits on BTA6 markers from the Illumina BovineHD BeadChip. rs numbers, positions in basepairs, â  log10(p value), SNP effects and alleles for all markers on BTA6 on the Illumina BovineHD BeadChip. The file contains twelve sheets, one for each trait.
DOI: 10.6084/m9.figshare.c.3634556_d4.v1
title: MOESM5 of Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production

description: Additional file 5: Table S4. Results for single marker association analyses of CM1, CM4, CM6, kg milk, kg protein and kg fat on imputed full sequence data. Positions in basepairs, rs numbers, â  log10(p value), minor allele frequency, SNP effects, alleles, putative consequences of the variants on the protein sequence and nearest gene for the imputed full sequence SNPs. The file contains six sheets, one for each tested trait.
DOI: 10.6084/m9.figshare.c.3634556_d5.v1
title: MOESM1 of Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production

description: Additional file 1: Table S1. SNP genotype, pregnancy status, age, lactation number and lactation status for the cows used for analyses of protein concentrations and ligand binding.
DOI: 10.17863/cam.38231
title: Research data supporting "Optical and structural properties of dislocations in InGaN"

description: The figures in this dataset are taken from the associated publication in the Journal of Applied Physics. Data to support figures 2–6 are provided. The following are captions for the figures in the Journal of Applied Physics. Figure 1 – (a) AFM, (b) SEM, and (c) room temperature panchromatic CL taken on the same area of sample B. Figure 2 – (a) AFM, continuous wave (CW) mode CL (b) integrated intensity and (c) peak wavelength, and pulsed mode CL (d) integrated intensity and (e) peak wavelength of the same region of sample D at 300 K (corresponding to the area highlighted in (a)). (f) Streak map taken in the surrounding material, and (g) extracted time decay curve at the spectral position indicated by a square in (g). (The black regions in (e) correspond to pixels where the CL signal was too low to extract accurate value of peak wavelength.) Figure 3 – Room temperature panchromatic CL image of samples (a) A, (b) B, (c) C, and (d) D. In inset of (d), panchromatic CL with brightness and contrast adjusted to reveal CL intensity variation at dislocations. Plots of the (e) intensity ratio and (f) energy shift on the center and on the facet of the V-pit as a function of indium content and dislocation type. Figure 4 – Molecular dynamics results of distribution and length of In-N-In chains in supercells of overall composition 5.5% (a) and 20% (b). (c) Probability of indium atom to be part of multiple atom chain. Figure 5 – Wavelength dependence of (a) decay time τdecay and (b) rise time τrise recorded at 15 K on the bright spot of an edge-type dislocation in samples B and D. In background, corresponding time integrated emission spectra (B in violet, and D in blue), and in dotted line, the time response of the system. Figure 6 – Wavelength dependence of the decay time τdecay recorded at 300 K on (a) the surrounding material and (b) bright spot of an edge-type dislocation in sample D, with corresponding time integrated emission spectra and streak map. For direct comparison, the surrounding emission spectrum (the same as in (a)) is added as the dotted line in (b). Figure 7 – ADF-STEM (a,e), dark field TEM images taken under g=11 ̅00 (b,f) and g=0002 (c,g) condition, and EDX mapping of In fraction (d,h) of a V-pit in sample B (a-d) and sample D (e-h).
DOI: 10.6084/m9.figshare.c.3634565_d3.v1
title: Additional file 6: of 
                     De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways

description: Secretary proteins of S. oryzae and their pfam domains. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3634565_d6.v1
title: Additional file 3: of 
                     De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways

description: Pathogenicity gene orthologs in Sarocladium oryzae in comparison to other fungal species. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3634565_d8.v1
title: Additional file 8: of 
                     De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways

description: Cytochrome P450 gene families in S. oryzae. (XLSX 31 kb)
DOI: 10.15468/dl.87mavg
title: Occurrence Download

description: A dataset containing 1682 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is one of (Cyperus difformis L., Cyperus esculentus L., Cyperus papyrus L.)"
 ]
}

 The dataset includes 1682 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037891-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.25266
title: Tankwa Karoo survey data (2013-2015)

description: Spreadsheets containing artefact and site data from Tankwa Karoo surveys (2013-2015) to accompany the PhD thesis 'Variation and modernity in Middle Stone Age landscape use in the Tankwa Karoo, Western and Northern Cape, South Africa' (University of Cambridge, submitted July 2018). The spatial co-ordinates for artefacts and sites are not included because artefacts are still in situ. Site locations will be uploaded to SAHRIS (http://www.sahra.org.za/sahris/) in due course and will be accessible to members. To request the spatial data, please contact the author directly
DOI: 10.6084/m9.figshare.c.3634613_d4.v1
title: Additional file 7: of EWS and FUS bind a subset of transcribed genes encoding proteins enriched in RNA regulatory functions

description: Expression analyses based on microarray data of genes presented with FUS, EWS, FUS and EWS, and Ac-H3K9 ChIP-seq peaks. (XLS 70 kb)
DOI: 10.6084/m9.figshare.c.3634613_d5.v1
title: Additional file 8: of EWS and FUS bind a subset of transcribed genes encoding proteins enriched in RNA regulatory functions

description: Microarray data gene probe sets for actively transcribed genes also presented with FUS and Ac-H3K9 (n = 35), EWS and Ac-H3K9 (n = 135), or FUS and EWS and Ac-H3K9 (n = 58) ChIP-seq peaks. The probe sets were used in GO analysis. (XLSX 41 kb)
DOI: 10.17863/cam.102234
title: Research Data supporting "Modelling human gut-microbiome interactions in a 3D bioelectronic platform"

description: Data from impedance analysis, matlab code and images. The impedance analysis is complex impedance traces taken using a potentiostat. Each file corresponds to a figure in the published paper. Mat lab scripts are included for extracting parameters such as resistance. There is another excel file which has the data from the PCR (polymerase chain reaction) experiments. The images are confocal microscopy images of cells within devices, showing biomarkers such as tight junction proteins.
DOI: 10.6084/m9.figshare.c.3634613_d12.v1
title: Additional file 2: of EWS and FUS bind a subset of transcribed genes encoding proteins enriched in RNA regulatory functions

description: List of significant EWS binding peaks within or close (within 10Â kb distance) to annotated genes. (XLSX 15 kb)
DOI: 10.15468/dl.u8b9gn
title: Occurrence Download

description: A dataset containing 21371661 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 21371661 records from 925 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037883-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.63030
title: Research data supporting "Understanding, Detecting and Mitigating the Effects of Coactivations in Ten-Finger Mid-Air Typing in Virtual Reality"

description: Coactivation data corresponding to the analysis presented in "Understanding, Detecting and Mitigating the Effects of Coactivations in Ten-Finger Mid-Air Typing in Virtual Reality." The attached datasheet contains two tabs: TOUCH EVENT DATA and LAYOUT DATA. TOUCH EVENT DATA details the touch events and their attributes. Feature values are provided for participants 1 to 12. Detailed definitions of these features are provided in the associated publication. LAYOUT DATA details the distribution of touch events and coactivations over the keyboard layout.
DOI: 10.6084/m9.figshare.c.3634652_d3.v1
title: Additional file 4: of Identification of source and sink populations for the emergence and global spread of the East-Asia clone of community-associated MRSA

description: Genes associated with either USA or East Asia clade. Genes whose presence differed significantly between the USA and East Asia clades are listed. We also report the proportion of isolates within the USA and East Asia clades for which each gene was present and note those that share the same pattern of presence or absence across the isolates (identified by having the same â  column patternâ  ). Results for genes whose presence differed significantly between the USA and Taiwan isolates (as opposed to the USA and East Asia clades) are presented in a separate worksheet. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3634661_d1.v1
title: Additional file 8: Table S7. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: lncRNAs directly induced/repressed by TGF-Î˛ signaling pathway. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.c.3634661_d2.v1
title: Additional file 15: Table S14. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: The expression levels in FPKM of lncRNAs in TGF-Î˛ starvation and TGF-Î˛ treatment adult HSCs. (XLSX 250 kb)
DOI: 10.6084/m9.figshare.c.3634661_d3.v1
title: Additional file 14: Table S13. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: The mean expression levels in FPKM of lncRNAs in adult HSCs, PSCs, dermal fibroblasts, and livers. (XLSX 328 kb)
DOI: 10.6084/m9.figshare.c.3634661_d6.v1
title: Additional file 2: Table S2. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: GTEx ID and pathology reads of eight normal livers, two cirrhosis livers, and two bridging-fibrosis livers. (XLS 22 kb)
DOI: 10.6084/m9.figshare.c.3634661_d5.v1
title: Additional file 16: Table S15. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: H3K4me1:H3K4me3 ratio of the 851 lncRNAs in hiF cells. (XLS 78 kb)
DOI: 10.6084/m9.figshare.c.3634661_d4.v1
title: Additional file 1: Table S1. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: GTEx samples used in expression analyses. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3634661_d7.v1
title: Additional file 11: Table S10. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: Co-expression pairs and gene lists of major functional modules in clusters I, II and IV. (XLS 988 kb)
DOI: 10.6084/m9.figshare.c.3634661_d9.v1
title: Additional file 5: Table S4. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: The genomic locations of super-enhancers. (XLS 60 kb)
DOI: 10.6084/m9.figshare.c.3634661_d8.v1
title: Additional file 9: Table S8. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: Expression profiles of HSC-specific lncRNAs across HSC myofibroblasts, TGF-Î˛ HSCs, and 43 human tissues or cell types. (XLS 389 kb)
DOI: 10.6084/m9.figshare.c.3634661_d12.v1
title: Additional file 13: Table S12. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: Expression profile of divergently paired protein-coding genes and lncRNAs that are co-expressed across 43 human tissues and cell types. (XLSX 533 kb)