cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hp388dm/4
title: Unphased genotypes of Caribbean reef fishes (Hypoplectrus sp.)

description: Genotypes of 51 hamlets (H. gemma, H. maya, H. nigricans, H. puella and H. unicolor). Based on ~24x Illumina sequencing data, created with GATK.
DOI: 10.5061/dryad.m80k750/3
title: Kent et al_Data

description: Dataset containing each prey individual's median speed, acceleration and nearest neighbour distances based on predator activity state (inactive or active) and angular distance to the predator's mouth (in 5º bins)
DOI: 10.5061/dryad.m80k750/4
title: Kent et al_Rcode

description: R code used to to produce statistics reported in: Fine-scale behavioural adjustments of prey on a continuum of risk
DOI: 10.5061/dryad.nj16d88/4
title: S1

description: Table S1: specimen and sampling data
DOI: 10.5061/dryad.nj16d88/5
title: S2

description: Table S2: HZAR confidence intervals
DOI: 10.5061/dryad.nj16d88/6
title: supplemental_figures

description: Supplemental figures S1-S5
DOI: 10.5061/dryad.nj2b2h4/1
title: Carollia Piper Partitioning, La Selva Biological Station, Costa Rica

description: Carollia measurements, fecal composition, and Piper preference trials. La Selva Biological Station, Costa Rica, 2012-2013.
DOI: 10.5061/dryad.nj2b2h4/2
title: R script, Maynard et al. 2019

description: Carollia-Piper fecal and preference analysis
DOI: 10.5061/dryad.q0r84n4/1
title: DATA

description: Data of the experiments 1, 2, and 3 are on sheets 1, 2, and 3, respectively.
DOI: 10.5061/dryad.q0sr5p5/1
title: Barcodes for Pyrrhopyginae samples

description: Barcode sequences for Pyrrhopyginae samples
DOI: 10.5061/dryad.q0sr5p5/2
title: Protein coding regions of Pyrrhopyginae mitogenomes

description: Protein coding regions of Pyrrhopyginae mitogenomes
DOI: 10.5061/dryad.q0sr5p5/3
title: Input for constructing time-calibrated tree by BEAST

description: BEAST input file
DOI: 10.5061/dryad.q0sr5p5/4
title: Concatenated nuclear protein coding sequences for Pyrrhopyginae samples

description: Concatenated nuclear protein coding sequences for Pyrrhopyginae samples
DOI: 10.5061/dryad.qb6v87h/13
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the liverwort Crossocalyx hellerianus, population N

description: Nuclear microsatellite data from Hola E. et al. (2015, PloS ONE, 10, e0133134) for population N of the liverwort Crossocalyx hellerianus, with pairwise geographic distance matrix (in cm). If you use the data in this file, please cite the original publication: Holá, E., Košnar, J., & Kučera, J. (2015) Comparison of genetic structure of epixylic liverwort Crossocalyx Hellerianus between central European and Fennoscandian populations. PloS ONE, 10, e0133134.
DOI: 10.5061/dryad.qb6v87h/14
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the liverwort Crossocalyx hellerianus, population P

description: Nuclear microsatellite data from Hola E. et al. (2015, PloS ONE, 10, e0133134) for population P of the liverwort Crossocalyx hellerianus, with pairwise geographic distance matrix (in cm). If you use the data in this file, please cite the original publication: Holá, E., Košnar, J., & Kučera, J. (2015) Comparison of genetic structure of epixylic liverwort Crossocalyx Hellerianus between central European and Fennoscandian populations. PloS ONE, 10, e0133134.
DOI: 10.5061/dryad.qb6v87h/15
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the liverwort Crossocalyx hellerianus, population S

description: Nuclear microsatellite data from Hola E. et al. (2015, PloS ONE, 10, e0133134) for population S of the liverwort Crossocalyx hellerianus, with pairwise geographic distance matrix (in cm). If you use the data in this file, please cite the original publication: Holá, E., Košnar, J., & Kučera, J. (2015) Comparison of genetic structure of epixylic liverwort Crossocalyx Hellerianus between central European and Fennoscandian populations. PloS ONE, 10, e0133134.
DOI: 10.5061/dryad.qb6v87h/16
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the liverwort Crossocalyx hellerianus, population V

description: Nuclear microsatellite data from Hola E. et al. (2015, PloS ONE, 10, e0133134) for population V of the liverwort Crossocalyx hellerianus, with pairwise geographic distance matrix (in cm). If you use the data in this file, please cite the original publication: Holá, E., Košnar, J., & Kučera, J. (2015) Comparison of genetic structure of epixylic liverwort Crossocalyx Hellerianus between central European and Fennoscandian populations. PloS ONE, 10, e0133134.
DOI: 10.5061/dryad.qb6v87h/17
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the liverwort Crossocalyx hellerianus, population Y

description: Nuclear microsatellite data from Hola E. et al. (2015, PloS ONE, 10, e0133134) for population Y of the liverwort Crossocalyx hellerianus, with pairwise geographic distance matrix (in cm). If you use the data in this file, please cite the original publication: Holá, E., Košnar, J., & Kučera, J. (2015) Comparison of genetic structure of epixylic liverwort Crossocalyx Hellerianus between central European and Fennoscandian populations. PloS ONE, 10, e0133134.
DOI: 10.5061/dryad.qb6v87h/18
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the liverwort Crossocalyx hellerianus, population Z

description: Nuclear microsatellite data from Hola E. et al. (2015, PloS ONE, 10, e0133134) for population Z of the liverwort Crossocalyx hellerianus, with pairwise geographic distance matrix (in cm). If you use the data in this file, please cite the original publication: Holá, E., Košnar, J., & Kučera, J. (2015) Comparison of genetic structure of epixylic liverwort Crossocalyx Hellerianus between central European and Fennoscandian populations. PloS ONE, 10, e0133134.
DOI: 10.5061/dryad.qb6v87h/19
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the moss Orthotrichum handiense

description: ISSR data from Patiño, J. et al. (2013, Journal of Biogeography, 40, 857–868). If you use the data in this file, please cite the original publication: Patiño, J., Medina, R., Vanderpoorten, A., González-Mancebo, J.M., Werner, O., Devos, N., … Ros, R.M. (2013) Origin and fate of the single-island endemic moss Orthotrichum handiense. Journal of Biogeography, 40, 857–868.
DOI: 10.5061/dryad.qb6v87h/20
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the liverwort Plagiochila asplenioides

description: Nuclear microsatellite data from Korpelainen H. et al. (2012, International Journal of Plant Sciences, 173, 1015–1022). If you use the data in this file, please cite the original publication: Korpelainen, H., Forsman, H., Virtanen, V., Pietiläinen, M., & Kostamo, K. (2012) Genetic composition of bryophyte populations occupying habitats differing in the level of human disturbance. International Journal of Plant Sciences, 173, 1015–1022.
DOI: 10.5061/dryad.r5594f0/1
title: DE_all results by comparison

description: Results from differential gene expression analyses.
DOI: 10.5061/dryad.r5594f0/2
title: Fasta Files

description: Fasta alignments for gene data sets
DOI: 10.5061/dryad.r5594f0/3
title: Supplementary Table 1
DOI: 10.5061/dryad.r9f25fj/1
title: Total protein and Germination rates

description: The germination rates, Total protein and descriptive information for each embryonic sample.
DOI: 10.5061/dryad.r9f25fj/2
title: egg volume

description: contains size measurements for individual eggs (corresponds to descriptive statistics in Figure 1 of the main text)
DOI: 10.5061/dryad.r9f25fj/3
title: Total protein

description: eggs used in the "egg volume" file were then sorted into samples of 3 eggs and their protein was quantified and compiled into this file.
DOI: 10.5061/dryad.rj0kj10/1
title: All scripts and simulation output

description: This zip file contains all scripts and simulation outputs from SLiM, including raw tree files. See the GitHub repository https://github.com/TestTheTests/TTT_RecombinationGenomeScans for more information, and filtered vcf files used for all analyses.
DOI: 10.5061/dryad.vb27ks3/1
title: Reitmayer_et_al_2019_honey_bee_diesel_pollution_Sci_Rep

description: This zip file includes five separate .csv files. Each file contains the data used to create one graph and it's accompanying statistical analysis for the following paper: Reitmayer CM, Ryalls JMW, Farthing E, Jackson CW, Girling RD, Newman TA. 2019. Acute exposure to diesel exhaust induces central nervous system stress and altered learning and memory in honey bees. Sci. Rep.
DOI: 10.17632/wc5rcxgc64.1
title: Data for: A novel method of coded-aperture push-broom Compton scatter imaging: principles, simulations and experiments

description: Data of coded-aperture push-broom Compton scatter imaging
DOI: 10.5061/dryad.0898ss6/2
title: Environment

description: Environmental variables at random locations around kittiwake colonies used to calculate environmental heterogeneity
DOI: 10.5061/dryad.0898ss6/3
title: Kittiwake trip metrics and success

description: Trip metrics, reproductive success and heterogeneity used in paper analyses
DOI: 10.5061/dryad.0898ss6/4
title: HMMbehaviours

description: Proportion of time spent in forage/transit/rest
DOI: 10.5061/dryad.0898ss6/5
title: Foverlap

description: Overlap between individual foraging areas
DOI: 10.5061/dryad.0898ss6/6
title: Fsize

description: Size of individual foraging areas
DOI: 10.5061/dryad.3h2n106/1
title: Phylogenetic analysis of viruses sequenced by swab-NGS and VI-NGS

description: Phylogenetic analysis of influenza A viruses from blue winged teal samples.
DOI: 10.5061/dryad.43m733k/2
title: Supplementary Video 1
DOI: 10.5061/dryad.43m733k/3
title: Supplementary Video 2
DOI: 10.5061/dryad.43m733k/4
title: Supplementary Video 3
DOI: 10.5061/dryad.43m733k/5
title: Supplementary Material
DOI: 10.5061/dryad.4b08gn8/1
title: Michigan Bee and Site Data

description: data file in csv format containing the specimen level data on body size measures: intertegular distance (ITD) and head capsule width (head). Also includes locality data including local treatment, land cover and planting metrics.
DOI: 10.5061/dryad.4b08gn8/2
title: New York Bee and Site Data

description: data file in csv format containing the specimen level data on body size measures: intertegular distance (ITD) and head capsule width (head). Also includes locality data including local treatment, land cover and planting metrics.
DOI: 10.5061/dryad.4bq41sg/1
title: Plethodon cinereous encounter history data

description: Individual-level data for spatial capture recapture analysis in R package oSCR
DOI: 10.5061/dryad.4bq41sg/2
title: Trap deployment data for cover board array in Site 1, Session 1

description: Data frame containing information of each trap and their corresponding session, site, and day covariate
DOI: 10.5061/dryad.554t595/1
title: Kimmittetal-OvarianReceptorData-published

description: This data file contains ovary mass, hydrogen isotopes, and gene expression data for the publication.


SampleNo = Randomly assigned ovary sample number;
FemaleID= Assigned female ID at time of euthanasia;
Trig= Triglyceride levels (Indicator of Very-low density lipoprotein; VLDL; μg/μL); 
FeatherdD= Feather δ2H isotopes;
ClawdD= Claw δ2H isotopes;
Subspecies= Female migratory strategy;
Date= Calendar date of capture of female individual;
CaptureJulian= Julian date of capture of female individual;
OvaryMass= Mass of ovary tissue (mg);
Body Mass = Mass of body (without blood; g);
NormLHR= Normalized transcript abundance of Luteinizing hormone receptor (LHR);
NormFSHR= Normalized transcript abundance of Follicle-stimulating hormone receptor (FSHR);
NormGR= Normalized transcript abundance of Glucocorticoid receptor (GR);
NormMR= Normalized transcript abundance of Mineralocorticoid receptor (MR);
NormGnIHR= Normalized transcript abundance of Gonadotropin-inhibitory hormone receptor (GnIHR);
NormAROM= Normalized transcript abundance of aromatase (AROM)
DOI: 10.5061/dryad.554t595/2
title: Kimmittetal-LiverReceptorData-published

description: This data file contains liver receptor gene expression data (mRNA transcript abundance) for this manuscript. 

SampleNo = Randomly assigned ovary sample number;
FemaleID= Assigned female ID at time of euthanasia;
Date= Calendar date of capture of female individual;
CaptureJulian= Julian date of capture of female individual;
Subspecies= Female migratory strategy;
NormER= Normalized transcript abundance of Estrogen receptor (GR);
NormGR= Normalized transcript abundance of Glucocorticoid receptor (GR);
NormMR= Normalized transcript abundance of Mineralocorticoid receptor (MR)
DOI: 10.5061/dryad.6d8p7j1/1
title: README

description: Description of the tree abundance data file (.xlsx)
DOI: 10.5061/dryad.6d8p7j1/2
title: tree_abundance_data_GolfoDulce_BITR-18-091R2

description: Abundance (individuals per hectare) of tree and palm species in the Golfo Dulce region, Costa Rica
DOI: 10.5061/dryad.783p8m2/1
title: Full species list_moth survey_Costa Rica_La Gamba_Rabl et al.

description: Full species list and abundances from the publication Rabl, D., et al. 2019. Moth assemblages in Costa Rican Forest mirror small-scale topographic heterogeneity
DOI: 10.5061/dryad.783p8m2/2
title: Habitat descriptors_moth survey_Costa Rica_La Gamba_Rabl et al.

description: Habitat descriptors from the publication Rabl, D., et al. 2019. Moth assemblages in Costa Rican Forest mirror small-scale topographic heterogeneity
DOI: 10.5061/dryad.8778hh9/1
title: McDowall and Lynch Supplementary Data

description: Shapefile containing all 1,893,597 hexagonal cells, along with information on each cell's elevation, slope, cost-weighted distance to shore, flow accumulation, occupancy status (occupied vs unoccupied), and number of first-order neighbors. See Appendix S1 for further details.
DOI: 10.5061/dryad.8ts2867/1
title: Phenotypic data

description: This .csv file contains phenotypic measurements for each gypsy moth sample. The three phenotypic are Mass, Pupal Development Time (PD), and Total Development Time (TDT). TDT and PD were used to calculate Larval Development Time (LDT), which is TDT - PD. Further descriptions of these data are available in the manuscript. Samples are labeled with population identifiers followed by individual identifiers, with an underscore separating these identifiers.
DOI: 10.5061/dryad.8ts2867/2
title: Geographic Locations

description: This file contains the geographic coordinates for each sampled population. It is a tab-delimited text file.
DOI: 10.5061/dryad.8ts2867/3
title: Variance components for FST calculation

description: This file contains the variance components estimated using hierfstat. There is one set of components for each SNP. Components are: population (Pop), individual (Ind), and error (Error). The first column is the SNP identifier (SNP_id).
DOI: 10.5061/dryad.8ts2867/4
title: Exploratory Data Analysis Script

description: This R script was used to explore patterns within the data. Comments are used to briefly describe the analysis. A header gives contact information for the script author.
DOI: 10.5061/dryad.8ts2867/5
title: Input and Output Files for Berg & Coop

description: The zipped archive contains a directory in which input files and output files from the method of Berg & Coop (2014) are housed. Please refer to Jeremy Berg's GitHub repository (cited in the associated manuscript) for detailed instructions on how to execute these files with his scripts.
DOI: 10.5061/dryad.8ts2867/6
title: Miscellaneous R Scripts and Inputs

description: This archive contains two directories, both of which were used to explore summary statistics and/or performance of the inference step for sets of GWAS SNPs. Each directory contains one or more R scripts, as well as the input files needed for the script. Please see the manuscript for further details. This is where the main results from GEMMA are located (see files: BSLMM_norm.csv and files ending in "_hyp.csv").
DOI: 10.5061/dryad.8ts2867/7
title: 012 file

description: This .txt file is a 012 file of for the genotypes of all individuals used in this study. Rows are individuals and columns are loci.
DOI: 10.5061/dryad.8ts2867/8
title: gemma_input

description: This zip file contains a weighted genotype file and all transformed phenotype files that were used as input in the program GEMMA. Phenotypes (Mass, LDT, and PD) were transformed in two ways: one correcting for population structure based on PC axes and the other was normal quantile transformed.
DOI: 10.5061/dryad.8ts30t5/1
title: Ambient seawater (omega 1.40) - live

description: File contains 5 folders with the reconstructed CT data (*.DICOM format) and scan set-up information (*.pca format) for the 5 live specimens of L.helicina antarctica incubated for 13 days in ambient seawater (omega aragonite = 1.40)
DOI: 10.5061/dryad.8ts30t5/2
title: Ambient seawater (omega 1.40) - decay

description: File contains 5 folders with the reconstructed CT data (*.DICOM format) and scan set-up information (*.pca format) for the 5 decaying specimens of L.helicina antarctica incubated for 13 days in ambient seawater (omega aragonite = 1.40)
DOI: 10.5061/dryad.8ts30t5/3
title: Slightly undersaturated seawater (omega 0.89) - decay

description: File contains 5 folders with the reconstructed CT data (*.DICOM format) and scan set-up information (*.pca format) for the 5 decaying specimens of L.helicina antarctica incubated for 13 days in seawater adjusted to an aragonite saturation of 0.89
DOI: 10.5061/dryad.b3s4v0g/10
title: Gavialis cranium unilateral posterior

description: Abaqus input file of Gavialis cranium simulating an unilateral posterior bite.
DOI: 10.5061/dryad.b3s4v0g/11
title: Gavialis mandible bilateral anterior

description: Abaqus input file of Gavialis mandible simulating a bilateral anterior bite.
DOI: 10.5061/dryad.b3s4v0g/12
title: Gavialis mandible bilateral middle

description: Abaqus input file of Gavialis mandible simulating a bilateral middle bite.
DOI: 10.5061/dryad.b3s4v0g/4
title: Gavialis cranium model

description: Surface model of the cranium of Gavialis. (Note: not original size as the model was originally scaled to skull length)
DOI: 10.5061/dryad.b3s4v0g/5
title: Gavialis mandible model

description: Surface model of the mandible of Gavialis. (Note: not original size as the model was originally scaled to skull length)
DOI: 10.5061/dryad.b3s4v0g/6
title: Gavialis cranium bilateral anterior

description: Abaqus input file of Gavialis cranium simulating a bilateral anterior bite.
DOI: 10.5061/dryad.b3s4v0g/7
title: Gavialis cranium bilateral middle

description: Abaqus input file of Gavialis cranium simulating a bilateral middle bite.
DOI: 10.5061/dryad.b3s4v0g/8
title: Gavialis cranium bilateral posterior

description: Abaqus input file of Gavialis cranium simulating a bilateral posterior bite.
DOI: 10.5061/dryad.b3s4v0g/9
title: Gavialis cranium unilateral anterior

description: Abaqus input file of Gavialis cranium simulating an unilateral anterior bite.
DOI: 10.5061/dryad.bd8j403/1
title: blue_whale_figures

description: ROC and side-by-side plots similar to those seen in the manuscript for all of the blue whale data used in this study.
DOI: 10.5061/dryad.bd8j403/2
title: risso_dolphin_figures
DOI: 10.5061/dryad.bd8j403/3
title: data

description: All data and code used in this study.
DOI: 10.5061/dryad.bd8j403/4
title: detector stats table

description: All detection statistics for all individual animals used in this study.
DOI: 10.5061/dryad.bd8j403/5
title: example_detections

description: PDF file containing examples of how to perform detections using detect_peaks using a few different signals.
DOI: 10.5061/dryad.bd8j403/6
title: testset1

description: Dataset used in creating the example_detections PDF file.
DOI: 10.5061/dryad.c201r83/1
title: The COI, 16S, and ITS alignments of each individual for phylogenetic analyses.
DOI: 10.5061/dryad.dn4676s.2
title: Data from: Analysis-ready datasets for insecticide resistance phenotype and genotype frequency in African malaria vectors
DOI: 10.5061/dryad.dn4676s.2/1.2
title: 1. standard WHO susceptibility test results for species complex and subgroup samples
DOI: 10.5061/dryad.dn4676s.2/2.2
title: 2. standard WHO susceptibility test results for single species
DOI: 10.5061/dryad.dn4676s.2/3.2
title: 3. standard CDC bottle bioassay results for species complex and subgroup samples
DOI: 10.5061/dryad.dn4676s.2/4.2
title: 4. paired synergist bioassay results for species complex and subgroup samples
DOI: 10.5061/dryad.dn4676s.2/5.2
title: 5. intensity bioassay results for species complex and subgroup samples
DOI: 10.5061/dryad.f845h1n/1
title: Opoke et al. Host plants of Ruspolia differens

description: We studied host plants used by non-swarming Ruspolia differens for 15 months, in central Uganda. For each observed individual, the data includes information on study site, sex, developmental stage, colour morph, host plant and plant part fed.
DOI: 10.5061/dryad.gt22vt4/1
title: Hankin_et_al_2019_Ecosphere_Data

description: This archive includes regeneration, ring width, and climate data needed to reproduce the results presented in Hankin et al. (2019). The archived script and data should be extracted to the same directory to run the script for analysis. The archive contains six .csv files. Methods for the collection 
of these data are described in Hankin et al. (2018).
DOI: 10.5061/dryad.gt22vt4/3
title: Hankin_et_al_2019_Ecosphere_Code

description: This archive includes the R script to reproduce the results presented in Hankin et al. (2019). The archived script and data should be extracted to the same directory to run the script for analysis.
DOI: 10.5061/dryad.gv2qr76/1
title: spatial implicit

description: Python 2 code to reproduce Fig. 3. The prediction for tannin evolution in the spatial implicit approach, as a function of turnover rate and soil fertility.
DOI: 10.5061/dryad.gv2qr76/2
title: cellular_automaton

description: Python 2 code of the cellular automaton, used to generate Fig. 2 and Fig. 4.
DOI: 10.5061/dryad.gv2qr76/3
title: coevolution

description: Python 2 code to smile;ulate the coevolutionary dynamics of symbiotic capacity and tannin production.
DOI: 10.5061/dryad.h3kv180/1
title: microsatellite data by locus and cohort

description: Microsatellite genotypes (genepop format) for all nine eastern oyster (Crassostrea virginica) hatchery cohorts (parents and offspring) from the publication. Alleles are represented in three digit format, missing data is represented by 000000.
DOI: 10.5061/dryad.m80k750/5
title: Kent et al_Data2

description: Data recording the proportion of the trial that each predator spent active or inactive.
DOI: 10.5061/dryad.n7c08t7/1
title: Supplementary file 1

description: Supplementary file 1 provides the details of the analytical derivations, the code producing the figures and the simulation code as a Mathematica© .cdf file (MATHEMATICA v. 11.3 Wolfram Research 2018) which can be open using the free “CDF player” available on the Wolfram website
DOI: 10.5061/dryad.n7c08t7/2
title: Supplementary  file 2

description: Supplementary file 2 provides the Matlab© (MATLAB 2015a, The MathWorks, Natick, 2015) source code for the curve fitting procedure used for Eq.[8].
DOI: 10.5061/dryad.p3f31c1/1
title: LifeHistory Parameters For 82 Lizard Species

description: Life-history parameters collected from the literature for Reedy et. al. 2019 published in Evolution.
DOI: 10.5061/dryad.qb6v87h/21
title: Geographic coordinates and genotype data for the analysis of the spatial genetic structure of the moss Plagiomnium undulatum

description: nDNA and cpDNA sequence data from Ledent et al. (Ecology Letters, in press) If you use the data in this file, please cite the original publication: Ledent, A., Désamoré, A., Laenen, B., Mardulyn, P., McDaniel, S.F., Zanatta, F., (…) & Vanderpoorten, A. (2019) No borders during the post-glacial assembly of European bryophytes. Ecology Letters, in press.