cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13020/4j4t-e569
title: Sulfur bacteria promote dissolution of authigenic carbonates at marine methane seeps 

description: Carbonate rocks at marine methane seeps are commonly colonized by sulfur-oxidizing bacteria that co-occur with etch pits that suggest active dissolution. We show that sulfur-oxidizing bacteria are abundant on the surface of an exemplar seep carbonate collected from Del Mar East Methane Seep Field, USA. We then used bioreactors containing aragonite mineral coupons that simulate certain seep conditions to investigate plausible in situ rates of carbonate dissolution associated with sulfur-oxidizing bacteria. Bioreactors inoculated with a sulfur-oxidizing bacterial strain, Celeribacter baekdonensis LH4, growing on aragonite coupons induced dissolution rates in sulfidic, heterotrophic, and abiotic conditions of 1773.97 (±324.35), 152.81 (±123.27), and 272.99 (±249.96) Mol CaCO3  cm-2  yr-1, respectively. Steep gradients in pH were also measured within carbonate-attached biofilms using pH-sensitive fluorophores. Together, these results show that the production of acidic microenvironments in biofilms of sulfur-oxidizing bacteria are capable of dissolving carbonate rocks, even under well-buffered marine conditions. Our results support the hypothesis that authigenic carbonate rock dissolution driven by lithotrophic sulfur-oxidation constitutes a previously unknown carbon flux from the rock reservoir to the ocean and atmosphere.
description: Assembled 16S rRNA gene iTag libraries of the microbial communities attached to a methane seep carbonate rock on the top surfaces vs. the bottom surface (in contact with sediments) subsampled 3 times.
DOI: 10.13020/d74j-wd55
title: Leaf carbon fraction data from tree and grassland species collected at the Cedar Creek Ecosystem Science Reserve in 2015 and 2016 

description: This data set contains results from carbon fraction analysis (Fiber Analyzer 200, ANKOM Technology), including non-structural carbohydrates, hemicellulose, cellulose, lignin, neutral detergent fiber, and acid detergent fiber contents in percent (%) from tree and grassland species sampled at the  Cedar Creek Ecosystem Science Reserve in East Bethel, MN. The data was collected as part of the Dimensions of Biodiversity project “Linking remotely sensed optical diversity to genetic, phylogenetic and functional diversity to predict ecosystem processes”. Samples were collected in or near the old fields chronosequence, the oak savanna, and the Forest and Biodiversity Experiment (FAB 1) plots. We used this data together with leaf-level spectral measurements to build partial least squares regression (PLSR) models for predicting leaf traits from spectra.
DOI: 10.13020/d6c04b
title: Origin and development of fungal communities in an engineered biofilter

description: Microbial communities underpin the performance of biofilters used for treating pollutants, but community ‘seeding’ and development is not well understood, particularly for fungi. Fungi have unique biocatalytic potential in biofilters, and identifying their inoculum sources and community succession can inform design and management strategies to improve biofilter operation. Our goal was to track fungal community development in a full-scale woodchip biofilter treating air exhaust from a swine barn facility. We sequenced fungal ITS-1 amplicons 1) from potential inoculum sources (fresh wood chip media; manure from pits below pig housing) and 2) from wood chip biofilms at the inlet and outlet of the biofilter, sampling annually over 3 years. Inlet and outlet fungal communities were distinct at the outset, but became increasingly similar by year 3. A shift from Basidiomycetes and yeasts to Ascomycetes and molds was associated with a loss of richness as the community became dominated by fungi that originated from the manure exhaust. Notably, dominant taxa were pig skin dermatophytes, likely seeded continuously from within the barn. These patterns differ from those in natural wood decomposition studies, and the results suggest that hygiene within the barn will affect the performance of biofilters located outside of the barn, an aspect of biofilter management that has not been exploited. These ‘upstream’ inoculum effects may complicate management, however, our results identify several candidate fungi and an avenue for increasing inoculum potential on a continuous basis that might be valuable for seeding biofilters, improving control, and reduce lag-times during biofilter development.
description: This repository contains the MiSeq sequencing data for fungal communities in a study on biofilters. The BioFilter.zip folder contains 42 FASTQ files. The project run summary report specifies additional information on how the FASTQ data were produced for the "Jason" fungal community samples.
DOI: 10.13020/bytm-ae84
title: Simulation data for "Influence of charge sequence on the adsorption of polyelectrolytes to oppositely-charged polyelectrolyte brushes" 

description: When a solution of polyanionic chains is placed in contact with a polycationic brush, the polyanions adsorb into the brush. We investigate the influence of the charge sequences of the free and bound species on the thermodynamics of polyelectrolyte adsorption. As model systems, we consider free and brush polyelectrolytes with either block or alternating charge sequences, and study the adsorption process using coarse-grained Langevin dynamics with implicit solvent, explicit counterions, and excess salt. Free energy, internal energy, and entropy of adsorption are computed using umbrella sampling methods. When the number of polyanions exceed the number of polycations, the brush becomes overcharged. Free chains adsorb most strongly when both free and tethered chains have a block charge sequence, and most weakly when both species have an alternating sequence. Adsorption is stronger when the free polyanion has a block sequence and the tethered polycation is alternating than in the reverse case of an alternating free polymer and a tethered block copolymer. Sequence-dependent effects are shown to be largely energetic, rather than entropic, in origin.
description: When a solution of polyanionic chains is placed in contact with a polycationic brush, the polyanions adsorb into the brush. We investigate the influence of the charge sequences of the free and bound species on the thermodynamics of polyelectrolyte adsorption. As model systems, we consider free and
brush polyelectrolytes with either block or alternating charge sequences, and study the adsorption process using coarse-grained Langevin dynamics with implicit solvent, explicit counterions, and excess salt. Free energy, internal energy, and entropy of adsorption are computed using umbrella sampling
methods. When the number of polyanions exceed the number of polycations, the brush becomes overcharged. Free chains adsorb most strongly when both free and tethered chains have a block charge sequence, and most weakly when both species have an alternating sequence. Adsorption is stronger
when the free polyanion has a block sequence and the tethered polycation is alternating than in the reverse case of an alternating free polymer and a tethered block copolymer. Sequence-dependent effects are shown to be largely energetic, rather than entropic, in origin.
description: The folder contains the data files pertaining to the figures in the article "https://pubs.rsc.org/en/content/articlelanding/2019/sm/c9sm00581a#!divAbstract". They also contain the source codes for simulations and analyses utilized in the article above.
DOI: 10.13020/6khg-0d19
title: Block-level accessibility data for transit-way evaluation in the Twin Cities metropolitan region, 2019

description: This data is used in the evaluation of five transitway network scenarios for their impact on transit accessibility in the Metropolitan Council's jurisdiction. The accessibility change is interpreted as the number of additional jobs a worker can reach when the selected bus rapid transit alternative is included in the transit network compared to the baseline accessibility level for the same travel duration. The scenarios analyzed in this report include the following: • May 2019 baseline vs. Funded baseline (C Line, Orange Line, Green Line Extension) • Funded baseline vs. Prospective network (D Line, B Line, E Line) • Funded baseline + B Line, E Line vs. Prospective network • Funded baseline + D Line, E Line vs. Prospective network • Funded baseline + D Line, B Line vs. Prospective network
description: This data is used in the evaluation of five transitway network scenarios for their impact on transit accessibility in the
Metropolitan Council's jurisdiction. The accessibility change is interpreted as the number of additional
jobs a worker can reach when the selected bus rapid transit alternative is included in the transit network compared
to the baseline accessibility level for the same travel duration. The scenarios analyzed in this report
include the following:

• May 2019 baseline vs. Funded baseline (C Line, Orange Line, Green Line Extension)
• Funded baseline vs. Prospective network (D Line, B Line, E Line)
• Funded baseline + B Line, E Line vs. Prospective network
• Funded baseline + D Line, E Line vs. Prospective network
• Funded baseline + D Line, B Line vs. Prospective network
description: The data are provided in 20 shapefiles. The shapefiles are segmented by the scenario comparison and the analysis day/time. The fields include the Census block-level 15-digit identifiers, baseline accessibility, alternative scenario accessibility, their absolute difference, their percent difference. CRS EPSG: 4326 - WGS 84. Users should be able to map the cumulative job accessibility by transit for 5 transit network scenarios and 4 comparisons between transit networks.
DOI: 10.6084/m9.figshare.16910482
title: Long-term Hyperandrogenemia and/or Western-style Diet in Rhesus Macaque Females Impairs Preimplantation Embryogenesis

description: Supplementary tables and legends for a manuscript.
DOI: 10.6084/m9.figshare.16910482.v1
title: Long-term Hyperandrogenemia and/or Western-style Diet in Rhesus Macaque Females Impairs Preimplantation Embryogenesis

description: Supplementary tables and legends for a manuscript.
DOI: 10.21223/wuljpk/3qzyjc
title: 05-Data-Medios-de-vida-Capital-financiero.tab

description: :unav
DOI: 10.21223/wuljpk
title: Dataset for: Encuesta estructurada de modos de vida en comunidades de Perú (Capital financiero)

description: Se realizó una encuesta estructurada integral de las prácticas de medios de vida en 13 comunidades de los departamentos de Lima, Junín, Ayacucho, Cusco, Apurímac, Huancavelica en Perú. Se encuesto 1008 personas de las diferentes comunidades a través de indicadores económicos, ambientales y sociales. En este dataset se tiene información del capital financiero, evaluación de las diferentes fuentes de ingreso. Como primera fuente de ingreso se reporta Ganaderia (24.7%), Agricultura (14.4%), Autoempleo (12.8%) y Jornalero agricultura (10.6%) entre las mas principales. Como segunda fuente de ingreso se reporta Agricultura (21.5%), Ganaderia (21.4%), Autoempleo (10.8%). Asimismo se indica que el 14.5% solo tiene una fuente de ingreso.
DOI: 10.6084/m9.figshare.14601237
title: Raw radar track files

description: Bee tracks from original radar files. <br>
DOI: 10.6084/m9.figshare.14601237.v1
title: Raw radar track files

description: Bee tracks from original radar files. <br>
DOI: 10.6084/m9.figshare.14597799.v1
title: Tracks raw data

description: Individual processed flight tracks in the form of csv files. Each track details bee position, the position of location reference 1 (default origin), location reference 2, and the radar position. The unit is in meters. 'NorthX' and 'NorthY' indicates a coordinate system with axis X running east to West, and axis Y running South to North.<br>
DOI: 10.6084/m9.figshare.14597646
title: Track information and field site line coordinates

description: Excel table with all general information about each track, including Bee ID, date, and flight type.Coordinates of all pixels corresponding to a linear feature, from black and white version of satellite image. Includes reference coordinates of two locations.<br>
DOI: 10.6084/m9.figshare.14597799
title: Tracks raw data

description: Individual processed flight tracks in the form of csv files. Each track details bee position, the position of location reference 1 (default origin), location reference 2, and the radar position. The unit is in meters. 'NorthX' and 'NorthY' indicates a coordinate system with axis X running east to West, and axis Y running South to North.<br>
DOI: 10.6084/m9.figshare.14597646.v1
title: Track information and field site line coordinates

description: Excel table with all general information about each track, including Bee ID, date, and flight type.Coordinates of all pixels corresponding to a linear feature, from black and white version of satellite image. Includes reference coordinates of two locations.<br>
DOI: 10.13020/d6201d
title: Three-dimensional digital models of lithic cores from the archaeological site of Les Cottés (France)

description: 3D scanning is becoming an increasingly utilized tool in archaeology. In comparison with other methods of 3D registration close-range photogrammetry has the benefits of being relatively inexpensive, mobile, and extremely adaptable for use in field conditions. Here, 3D models of lithic cores from the Châtelperronian, Protoaurignacian, and Early Aurignacian levels of the site of Les Cottés (France) are presented as examples of the quality of model that can be produced using photographs taken with a simple and inexpensive photogrammetry rig.
description: There are three ways to view the 3D models in this data set. All models are freely available for download in the form of 3D PDFs. These can be opened in Adobe Reader or Adobe Acrobat. We are also making OBJ versions of these models available upon request the for educational and research purposes. Some models may also be viewed online within a web browser by visiting the first author's profile on the website Sketchfab. The URL for these models is https://sketchfab.com/port0228/folders. Because Sketchfab is a third-party site, the authors cannot ensure the longevity of these version of the models. 
Two versions of a photogrammetric scale, which may be used during image capture to facilitate image alignment and model scaling, are also available here. If you encounter issues with photogrammetry software improperly aligning photos or not recognizing the coded targets included in version 1, we suggest trying our alternative scale, which uses non-coded markers and different reference patterns. 
Specific questions about the site of Les Cottés and about access to additional materials may be addressed to Marie Soressi (m.a.soressi@arch.leidenuniv.nl).
DOI: 10.13020/d6dw2v
title: Rochester 1-Meter Land Cover Classification (Urban Focused)

description: A high-resolution (1-meter) land cover classification raster dataset was completed for three different geographic areas in Minnesota: Duluth, Rochester, and the seven-county Twin Cities Metropolitan area. This classification was created using high-resolution multispectral National Agriculture Imagery Program (NAIP) leaf-on imagery (2015), spring leaf-off imagery (2011- 2014), Multispectral derived indices, LiDAR data, LiDAR derived products, and other thematic ancillary data including the updated National Wetlands Inventory, LiDAR building footprints, airport, OpenStreetMap roads and railroads centerlines. These data sets were integrated using an Object-Based Image Analysis (OBIA) approach to classify 12 land cover classes: Deciduous Tree Canopy, Coniferous Tree Canopy, Buildings, Bare Soil, other Paved surface, Extraction, Row Crop, Grass/Shrub, Lakes, Rivers, Emergent Wetland, Forest and Shrub Wetland. 

We mapped the 12 classes by using an OBIA approach through the creation of customized rule sets for each area. We used the Cognition Network Language (CNL) within the software eCognition Developer to develop the customized rule sets. The eCognition Server was used to execute a batch and parallel processing which greatly reduced the amount of time to produce the classification. The classification results were evaluated for each area using independent stratified randomly generated points. Accuracy assessment estimators included overall accuracies, producers accuracy, users accuracy, and kappa coefficient. The combination of spectral data and LiDAR through an OBIA method helped to improve the overall accuracy results providing more aesthetically pleasing maps of land cover classes with highly accurate results.
DOI: 10.13020/q55y-ag77
title: Appendix Files: Quantifying Agrifood Production and Consumption at the U.S. Metropolitan and County Level to Inform Urban Food System Interventions

description: These are the appendix files for the thesis: Quantifying Agrifood Production and Consumption at the U.S. Metropolitan and County Level to Inform Urban Food System Interventions (Peter Nixon 2021). These files detail county-level agrifood production, demand, and the current local capacity for all major agrifoods in the U.S. Diet, as well as the qualitative guidelines for how food item & ingredient descriptions were used to classify food components as "fresh or minimally processed", "potentially fresh or minimally processed", and "processed". All production data from 2012, demand data derived from the 2005-2010 What We Eat In America/National Health And Nutrition Examination and Survey (NAHNES) harmonized dataset.
description: Appendix A. Qualitative Guidelines for Delineating Food Item & Food Ingredient Combinations by their Estimated Supply Chain Complexity

Appendix B. Agrifood Production & Demand by U.S. County & U.S. Metropolitan Area

Appendix C. Nominal Current Local Capacity Results for U.S. Counties
DOI: 10.13020/d6wd78
title: Supplemental Materials to Bayesian Adaptive Methods for Clinical Trials, 1st Edition

description: These files are the supplemental materials referred to in the 1st edition of Bayesian Adaptive Methods for Clinical Trials. This record is complete with datasets, R code, and WinBUGS. There is a csv file that provides a map for page number and associated file. If there is no page number, then there is a section number or short description.
DOI: 10.13020/zbcf-2828
title:  Data Supporting 'Towards representing listed mussel species in risk assessment: A database and multivariate analysis of freshwater mussel life-history traits' 

description: These files represent a literature review and database of freshwater mussel life-history data collected from published studies.
description: Literature published between 1970 and 2015 was identified using the Illinois Natural History Survey Freshwater Mollusk Bibliography (http://fms.inhs.illinois.edu/fmi/webd#Mollusk%20Bibliography). Articles published 2015-2019 were identified using the annual Freshwater Mollusk Conservation Society bibliographies. Articles were initially reviewed using a scan of the title and abstract to look for relevant data. 
Articles appearing to have relevant data were read thoroughly. Relevant qualitative and quantitative data on mussel life history, physiology, and population characteristics along with important metadata were extracted and stored in a relational database in Microsoft Access (2016). This data is available here in .csv and .accdb formats along with a list of literature reviewed
DOI: 10.13020/d6111f
title: Land Cover Shapefiles for Minneapolis and St. Paul, Minnesota

description: This project’s aim was to produce a land cover model of downtown Minneapolis and St. Paul, Minnesota. Our purpose was to discriminate features that offer potential cover and foraging habitat for birds (i.e. trees, shrubs, turf grass, water) from features that are less suitable for birds (i.e. impervious surfaces and buildings). Though we had birds in mind, the models we produced have broad utility in many contexts. To achieve our objectives, we integrated a variety of freely available spatial data. Object-based Image Analysis (OBIA) was the primary methodology we used to generate thematic land cover models.
description: This entry contains two shapefiles, one for Minneapolis and one for St. Paul, Minnesota. Both study sites are relatively small in spatial extent, measuring approximately 35 square kilometers. The Minneapolis centroid is located at 15N 479535 4980722, and the St. Paul centroid is located at 492734 4976993 (UTM NAD 83). Each shapefile consists of .dbf, .prj, .shp, and .shx files. All spatial features are polygons and the minimum size (spatial resolution) is 1 square meter. All spatial features have land cover attribute data, a variable with 10 possible values, as follows: bare or compacted earth; buildings; elevated greenspace; fountain or pool; impervious and unknown; roads; shrub; trees; turf; and water.
DOI: 10.13020/s40h-fv72
title: Code, data, and metadata document for the manuscript: Territorial landscapes: incorporating density-dependence into wolf resource selection study designs 

description: Code, data, and metadata document for the manuscript: Territorial landscapes: incorporating density-dependence into wolf resource selection study designs
DOI: 10.13020/11c7-vc76
title:  South Fork Caspar Creek Understory Evapotranspiration Data - 2019 

description: This dataset consists of evapotranspiration rates measured from different understory trees, shrubs, and ferns at the Caspar Creek Experimental Watersheds in northern California. Evapotranspiration rates were collected from 5 species at two times (June and July 2019) across five topgraphic positions ranging from streamside up to the ridgetop. Measurement species were located across a range of disturbance severities to test the hypothesis that changing light and water dynamics from different levels of disturbance will affect understory plant water use. Evapotranspiration rates were collected using a hand-made portable rapid ET chamber.
description: ET_master.csv contains the understory plant evapotranspiration rates and site data
ET_master_metadata.txt contains the associated metadata
DOI: 10.13020/vjnc-p894
title: Complete data for Overwinter survival of Corbicula fluminea in a central Minnesota lake

description: Corbicula fluminea is regarded as one of the most pervasive freshwater aquatic invasive species in the world. It has been widely cited to have a lower lethal temperature threshold of 2 degrees Celcius, which suggests the species would be unable to survive in Minnesota outside of areas of thermal refuge from sources such as power plant, water treatment facility, and other raw water user effluent). In August 2020 a volunteer participating in Starry Trek, an aquatic invasive species early detection event, recovered live C. fluminea from an inland Minnesota lake with no known thermal refuge (Briggs Lake, Sherburne County). This data set documents the distribution, overwinter survival, and size class structure of the population in Briggs Lake and observational data at a nearby lake (Big Lake, Sherburne County) where additional clams were discovered by a volunteer towards the end of the Briggs Lake project timeline. The data from this study are available here for public use.
description: These files contain environmental data from the study area from December 2020 through September 2021 as well as data about the individual recovered Corbicula fluminea specimens. A prepared manuscript will be available with detailed information regarding experimental methods and analysis. A Readme file is also available to provide a full description of the available data sets.