cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.a33ueu
title: Occurrence Download

description: A dataset containing 2955 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Canis lupus Linnaeus, 1758"
 ]
}

 The dataset includes 2955 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148747-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cws99j
title: Occurrence Download

description: A dataset containing 8781 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hibiscus tiliaceus L."
 ]
}

 The dataset includes 8781 records from 252 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324623-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-36908
title: Lam Jeevaratnum, India, 1941-1960

description: [description english/roman)] Photos & correspondence from Eastern Full Gospel Mission; newspaper cuttings; Before Kingslife story of Lam Jeevaratnum.
DOI: 10.15468/dl.mxfd9k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Placidochromis intermedius Hanssens, 2004"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0337030-210914110416597/datasets/export for details.
DOI: 10.15468/dl.k2dna2
title: Occurrence Download

description: A dataset containing 18765 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichonephila clavipes (Linnaeus, 1767)"
 ]
}

 The dataset includes 18765 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067530-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.27mtza
title: Occurrence Download

description: A dataset containing 9723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Botany (UPS)",
 "Country is Tanzania, United Republic of"
 ]
}

 The dataset includes 9723 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105786-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-36573
title: John Jameson and Elsie Jameson, Brazil, 1924-1925

description: [description english/roman)] Photos; correspondence; Amazonia conference report; S.America missionary equipment guide list and budget; map of mission work.
DOI: 10.25549/pcra-c14-36650
title: John Jameson, Brazil, 1919-1928

description: [description english/roman)] Sailed from Liverpool 1921-08-24; resigned from PMU/AOG 1928-07-21; photo; application forms; correspondence.
DOI: 10.15468/dl.emyj3s
title: Occurrence Download

description: A dataset containing 52731173 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Actinobacteria, Placozoa, Jungermanniopsida, Cubozoa, Stenolaemata, Scaphopoda, Andreaeopsida, Marchantiales, Parachela, Tetragonidiales, Naohideales, Bacillales, Charales, Rhodymeniales, Tinamiformes, Tetraphyllidea, Trepostomatida, 876, Arthracanthida, Enoplida, Phyllachorales, Acanthobdellida, Pucciniales, Solanales, Mantophasmatodea, Cyttariales, Protoraphidales Round, Mamiellales, Sessilia, Spirochaetales, Hiatelloidea J. E. Gray, 1824, Buprestoidea Leach, 1815, Schizodactyloidea Blanchard, 1845, Gelechioidea, Pteronarcyoidea, Pentatomoidea, Calliduloidea, Curculionoidea Latreille, 1802, Barnaviridae, Questidae, Adnatosphaeridiaceae, Thermosbaenidae, Gemelliporellidae, Graphidaceae, Sternoptychidae, Schistochilaceae, Vorticellidae Ehrenberg, 1838, Azollaceae, Sarraceniaceae, Micropeltidaceae, Haploporidae, Rhabdodemaniidae, Megomphicidae, Cerithiopsidae, Cosmocercidae, Phreatogammaridae, Triaenonychidae, Poduridae, Ethmodiscaceae, Chilodontidae, Polystyliphoridae, Arthroleptidae, Microhypsibiidae, Gastrocotylidae, Tretodictyidae, Hydnodontaceae, Uloboridae, Rhizostomatidae, Neogosseidae, Mytilidae, Scenopinidae, Piscicolidae, Nosybelbidae, Branchipodidae, Doryanthaceae, Paramyxoviridae, Trichosporonaceae, Lophiidae, Laomediidae, Hydractiniidae, Gomphodesmidae, Neogeophilidae, Lahmiaceae, Hygrophoraceae, Opisthoproctidae, Haemulidae, Rhyparochromidae, Hemipsocidae, Cyphocarididae, Bresiliidae, Lecanodiaspididae, Barybrotidae, Archidiaceae, Geraniaceae, Methylocystaceae, Sclerolinidae, Elaphomycetaceae, Polyangiaceae, Calosiphonaceae, Multicalycidae, Tachidiidae, Xenisthmidae, Haeckeliidae, Physophoridae, Cariamidae, Ptilonorhynchidae, Leptopsyllidae, Microparasellidae, Paratanaidae, Caenolestidae, Damasippoididae, Opomyzidae, Rhinidictyidae, Aniliidae, Nematochrysidaceae, Anisembiidae, Microporellidae, Rhinobatidae, Pneumoridae, 5976, Tessaradomidae, Monoscutidae, Trichotemnomataceae, Icteridae)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence, Literature Occurrence)"
 ]
}

 The dataset includes 52731173 records from 3975 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0319485-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/uvbhcz
title: Evaluation of safety and quality of final compost

description: The fine fraction resulting from the sieving (≤12 mm) of the two batches of compost was sent to an independent accredited laboratory (SADEF, France) to analyze the safety and agronomic quality according to the NF U44-051:2006 standard dedicated to organic soil improvers. The safety requirements cover the determination and quantification of inert materials and impurities (XPU 44-164:2004), pathogen microorganisms as viable helminth eggs (XP X33-017:2004) and Salmonella (NF EN ISO 6579:2002), HAP trace organic compounds (XP X 33-012:2000) and trace elements (NF EN 13650:2002, NF EN ISO 17294-2:2016). The agronomic assessment of the two composts covers the determination of total solid, organic matter, organic carbon, total nitrogen C/N ratio, pH, density, phosphorus, potassium, calcium, magnesium, total sulphur content according to standardized methods (NF EN 13040:2007, NF EN 13039:2011, NF EN 13037:2012, NF EN 13654-2:2002, NF EN ISO 17294-2:2016). A phytotoxicity test was carried out on both compost batches (NF U44-167:2016) to assess the risk of inhibiting the emergence and growth of two higher plants (barley, Hordeum vulgare, variety Etincel and watercress, Lepidium sativum, type Alénois). The acute toxicity test on earthworms (Eisenia fetida) was carried out in accordance with standard NF ISO 11268-1:2012. The immobilization test of microcrustaceans was carried out on Daphnia magma (ISO 6341:2012 using an eluate of the two composts obtained with a liquid/solid mass ratio of 10 (calculated as dry matter equivalent) as described in the leaching protocol of standard EN 12457-2:2002.
DOI: 10.57745/wvmjov
title: GWAS on fruit quality traits using INRAE sweet cherry (P. avium) germplasm collection

description: This project aimed at conducting a GWAS for fruit quality traits, in a germplasm collection of sweet cherry accessions genotyped using the GBS approach. Specifically, the main objectives of this study are to: (i) examine the existing variability of 23 fruit quality traits within a sample of 116 genotypes of sweet cherry, (ii) identify genome-wide SNP markers associated with these traits by GWAS using three reference genomes and two mixed linear models, (iii) investigate the putative functions, based on searches for orthologs, of the candidate genes associated with these SNPs.
DOI: 10.57745/za66ri
title: Landscape heterogeneity and pesticide reduction favor predation, but also grape infestation by Lobesia botrana

description: The data deposited were collected at the BACCHUS workshop site, located in Gironde in south-west France. It covers the Libournais and Entre-Deux-Mers wine-growing regions. The data were acquired as part of the SECBIVIT project and OPERA project. The data were collected in 19 paired landscapes, one in a conventional vineyard and one in an organic vineyard. Different landscape characteristics were recorded and farmers were interviewed to collect data on farming practices. In these landscapes, predation rates were measured on different development stages of the pest, the grape berry moth Lobesia botrana, as well as the damage caused to the vines corresponding to the 1st and 2nd generation of the pest. Data were collected in 2019.
DOI: 10.57745/v7fweh
title: Supplementary data for "Divergent selection for feed efficiency in pigs altered the duodenum transcriptome and DNA methylation profiles, resulting in greater responses to feed intake in the most efficient line"

description: Feed efficiency is a trait of interest in pigs as it contributes to lowering the ecological and economical costs of pig production. A divergent genetic selection experiment from a Large White pig population was performed for 10 generations, leading to pig lines with relative low- (LRFI, more efficient) and high- (HRFI, less efficient) residual feed intake (RFI). Feeding behaviour and metabolic differences have been previously reported between the two lines. We hypothesised that part of these differences could be related to differential sensing and absorption of nutrients in the proximal intestine. Here we investigated the duodenum transcriptome and DNA methylation profiles comparing overnight fasting with ad libitum feeding in LRFI and HRFI pigs (n=24). We identified 1,106 differentially expressed genes between the two lines, notably affecting pathways of the transmembrane transport activity and related to mitosis or chromosome separation. The LRFI line showed a greater transcriptomic response to feed intake, with 2,222 differentially expressed genes before and after a meal, as compared to 61 differentially expressed genes in the HRFI line. Feed intake affected genes from both anabolic and catabolic pathways in the pig duodenum, such as rRNA production and autophagy. We noted that several nutrient transporter and tight junction genes were differentially expressed between lines and/or by short term feed intake. We also identified 409 differentially methylated regions in the duodenum mucosa between the two lines, while this epigenetic mark was less affected by feeding. However most of the differentially expressed genes were not associated with proximal changes in DNA methylation profiles. Altogether, our findings highlighted that the genetic selection for feed efficiency in pigs changed the transcriptome profiles of the duodenum, and notably its response to feed intake, suggesting key roles for this proximal gut segment in mechanisms underlying feed efficiency.
DOI: 10.57745/xvfwvc
title: Sustainability assessment of dairy production systems: templates for farm data collection

description: The MilKey project aims at assessing the environmental, economic, and social sustainability of European dairy production systems, and at identifying ‘win-win’ farming practices for sustainable and greenhouse gas (GHG) optimised milk production. These data collection template were prepared to guide stakeholders wishing to conduct a sustainability assessment of dairy production systems. This template covers all the necessary data to assess the environmental, economic, and social sustainability dimensions of commercial dairy farms. Data requirements gathered in this template were deduced from the list of sustainability indicators presented in the DEXi-Dairy indicator handbook. The template is composed of 5 parts, i.e., Parts I-II-III for the environmental assessment, Part IV for the economic assessment, and Part V for the social assessment. The number of files to fill out depends on the number and nature of additional farming enterprises present on case study dairy farms. 1) Part I concerns the general information that must be collected on all commercial farms. 2) Part II focuses specifically on the dairy enterprise and must thus be completed for all commercial farms. 3) Part III records information about a potential beef enterprise and must thus be filled out for commercial farms that have an additional beef enterprise. 4) Part IV gathers all the economic data and must be filled out for all commercial case study farms. 5) Part V gathers all the social data and must be filled out for all commercial case study farms. Please refer to the guide for the collection of farm environmental and economic data for the detailed description of all variables included in Parts I-II-III-IV.
DOI: 10.57745/y0qi4a
title: Poor welfare hampers the success of racehorses

description: Data associated with the article 'Poor welfare hampers the success of racehorses' submitted for publication in the journal Applied Animal Behaviour Science
DOI: 10.57745/yygnyh
title: RPG complété 2021 Région Aquitaine

description: RPG complété 2021. Complète le RPG campagne 2021 pour les départements de la région (ancienne région) Aquitaine (24, 33, 40, 47, 64). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2023.
DOI: 10.57745/zbjc5z
title: Waste rock materials geotechnical characterization

description: Database of geotechnical classification of waste rock materials
DOI: 10.57745/wp5vgz
title: Budbreak dataset from 239 cultivars of an apple core collection_ 2015 -2023

description: This dataset contains phenological observations of budbreak (BBCH 54-C3 stage) on 239 cultivars of a dessert apple (Malus domestica Borkh.) core collection located at the INRAE Diascope experimental unit (43° 360N, 03°580E, , France). . The timing of budbreak was recorded from 2015 and continued yearly until 2023. Part of these observations were carried out with the support of the ERANET project Supcrop FruitFlow
DOI: 10.57745/zbqc9b
title: Sustainability assessment of dairy production systems: Dataset of the Milkey project

description: This dataset gathers sustainability indicators from the DEXi-Dairy sustainability assessment. The sustainability indicators were populated by farm data from seven European case study farms from Norway (NO), France (FR), Germany (DE), and Ireland (IR). The farm data was collected by using the MilKey data template and data collection guide (Baillet et al, 2022 a,b). All indicators presented in this dataset are described in the DEXi-Dairy indicator handbook (Baillet et al, 2022c). The datatset is composed of 4 parts, i.e., environmental indicators, economic indicators, social indicators, and farm characteristics.
DOI: 10.57745/xztw7z
title: GPASOIL-v1, a global dataset on phosphorus in agricultural soils

description: Two files are here provided: GPASOIL-v1_output.tgz and GPASOIL_scripts.tgz. The file GPASOIL-v1_output.tgz contains the agricultural soil phosphorus (P) pools simulated by the modeling approach described in the related publication. Soil P pools are provided at the global scale and at half degree resolution in a netcdf format. Fluxes of P corresponding to soil P input/output and to soil P dynamics are also given in the same file. Output are provided for the period 1900-2018 at annual time-step for both cropland and grassland. Fluxes were expressed in kgP/ha/yr and pools were expressed in kgP/ha, and are both representative to the top soil layer 0-0.3m. GPASOIL_scripts.tgz contains the whole file tree and associated scripts that were used to generate GPASOIL-v1_output.tgz. The file GPASOIL_scripts.tgz contains the scripts to generate the input files of the soil P dynamic model, these input files and the scripts corresponding to the soil P dynamic models.
DOI: 10.57745/zzh1yy
title: Contours des entités hydrologiques de simulation des modèles d'hydrologie de surface

description: Support SIG (.shp) des contours des entités hydrologiques de simulation pour les modèles d'hydrologie de surface SMASH et GRSD. Une version unifiée des deux différents shapefiles est aussi disponible.
DOI: 10.57745/yvxhsi
title: Average values of bulk density and coarse fragment at 0-30 cm and 30-50 cm of the first and second campaigns of the French Soil Quality Monitoring Network

description: The French Soil Quality Monitoring Network (RMQS) is a national program for the assessment and long-term monitoring of the quality of French soils. This network is based on the monitoring of 2240 sites representative of French soils and their land use. These sites are spread over the whole French territory (metropolitan and overseas) along a systematic square grid of 16 km x 16 km cells. The network covers a broad spectrum of climatic, soil and land-use conditions (croplands, permanent grasslands, woodlands, orchards and vineyards, natural or scarcely anthropogenic land and urban parkland). The physical, chemical and biological properties of the soil are measured on each site, during the first campaign and presently on the second campaign. The spatial and temporal variability of soil properties are explained by biophysical variables, sources of contamination, history of land-use and management practices on each plot. The first sampling campaign in metropolitan France took place from 2000 to 2009. This campaign focused on soil contamination assessment and made it possible to map key soil parameters (28 variables) as well as 12 trace metal elements and 70 persistent organic pollutants. The sampling method, measurements and observations on each site are described in the RMQS guidelines (see associated publication). The second campaign started in 2016 and should last 12 years. The soil tests were carried out on composite samples collected with an auger at two sampling layers: 0-30 cm or cultivated layer named “upper layer” or “layer 1” and 30-50 cm named “subsoil layer” or “layer 2”. Each composite sample was made up of 25 individual sample cores taken on a sampling area of 400 m², using an unaligned systematic sampling design (see description in the RMQS guidelines). In some cases a third layer was made up of holorganic layers in forests or meadows, corresponding to pedological horizons OF and OH, when these layers were sufficiently thick, (at least 1 cm) and continuous over the sampling area. On each plot were performed on a pit volumetric samples to measure bulk density and coarse fragment content. Usually three pseudo-replicates corresponding to both layer 1 and layer 2 and covering the thickness of each layer were sampled. For holorganic layers, bulk density was calculated from the composite sample, for which each elementary volume was measured. The dataset contains the results of bulk density and coarse fragment data from plots of the monitoring network and their available layers. The raw values of bulk density and coarse fragment content are not available here. Values of bulk density and coarse fragment are calculated according 0-30 cm layer and 30-50 cm layer and averaged using both campaigns values when available, first campaign only when unavailable. They are also corrected by layer by applying a weighting taking in account overlapping of samples.
DOI: 10.7910/dvn/3qketl
title: Replication Data for: Mitigating Carbon Tax Resistance Job Risk Information or Worker Compensation?

description: Full replication package including data and R scripts.
DOI: 10.6084/m9.figshare.30103156
title: Supply chain

description: <b>questionnaire survey data</b>
DOI: 10.6084/m9.figshare.30103156.v1
title: Supply chain

description: <b>questionnaire survey data</b>
DOI: 10.17026/ar/49cgeb
title: Plangebied Buorren te Goutum
title: gemeente Leeuwarden. Archeologisch vooronderzoek: een bureauonderzoek
title: RAAP-rapport 7953

description: &lt;p&gt;
Op basis van de resultaten van het bureauonderzoek is gebleken dat het plangebied overlapt met een
archeologisch rijksmonument (monumentnummer 46228). Binnen het terrein kunnen archeologische
resten worden verwacht van een terp daterend uit de late ijzertijd – late middeleeuwen. Daarnaast
kunnen resten van de Wiarda-state daterend vanaf de late middeleeuwen worden verwacht. Uit het
bureauonderzoek is gebleken dat grote delen van het plangebied (en daarmee het rijksmonument)
verstoord zijn. Tussen de verstoringen kunnen echter nog archeologische resten van hoge waarde
worden verwacht.
&lt;p&gt;
DOI: 10.5281/zenodo.15086637
title: sophiae27/CBM_exp_validation: Experimental data uploaded

description: Experimental and model data uploaded to the repository is in support of the manuscript.
DOI: 10.5281/zenodo.17098791
title: sophiae27/CBM_exp_validation: Experimental data uploaded

description: Experimental and model data uploaded to the repository is in support of the manuscript.
DOI: 10.5281/zenodo.17084318
title: Antimicrobials shape the gut microbiome structure and digestive profile of invertebrates

description: This dataset features data and code of the associated publication in Environmental Science & Technology (https://doi.org/10.1021/acs.est.5c04159). To reproducibly run the code you should download the entire .zip archives and open the *.RProj file, ideally with the same R version (4.4.0). To achieve maximum reproducibility of the code you should run renv::restore() to restore the packages recorded in renv.lock. Scripts within the folder code are named in the order in which they should be run.

Please note that due to data loss, we are unable to provide the R code specifically adapted to our dataset for the PICRUSt analyses. Instead, we are providing a generic version of the code, along with detailed instructions on how to adjust and run it for your own data.
DOI: 10.5281/zenodo.17084319
title: Antimicrobials shape the gut microbiome structure and digestive profile of invertebrates

description: This dataset features data and code of the associated publication in Environmental Science & Technology (https://doi.org/10.1021/acs.est.5c04159). To reproducibly run the code you should download the entire .zip archives and open the *.RProj file, ideally with the same R version (4.4.0). To achieve maximum reproducibility of the code you should run renv::restore() to restore the packages recorded in renv.lock. Scripts within the folder code are named in the order in which they should be run.

Please note that due to data loss, we are unable to provide the R code specifically adapted to our dataset for the PICRUSt analyses. Instead, we are providing a generic version of the code, along with detailed instructions on how to adjust and run it for your own data.
DOI: 10.5281/zenodo.17097487
title: ANVIo
DOI: 10.5281/zenodo.17097488
title: ANVIo
DOI: 10.6084/m9.figshare.21591429.v1
title: Spatial transcriptomic (Visium) data from breast cancer sections

description: Spatial transcriptomic (Visium) data from breast cancer sections