cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive125228.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive125229.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive125230.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive125231.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive125232.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive125233.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive125234.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive126022.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive126023.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive126024.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive126025.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive126026.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive126027.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive126028.20190402.4
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.14775730.v1
title: Additional file 2 of PREMATURE SENESCENCE LEAF 50 Promotes Heat Stress Tolerance in Rice (Oryza sativa L.)

description: Additional file 2: Table S1. INDEL and SNP between psl50 and mutant 1. Table S2. INDEL and SNP between psl50 and mutant 2. Table S3. INDEL and SNP between psl50 and mutant 3. Table S4. List of primers used in this study.
DOI: 10.6084/m9.figshare.14775666.v1
title: Additional file 4 of Indoor bacterial, fungal and viral species and functional genes in urban and rural schools in Shanxi Province, China–association with asthma, rhinitis and rhinoconjunctivitis in high school students

description: Additional file 3: Table S1. School and sample information in this study. Table S2. Sequencing statistics for collected dust samples. Table S3. Assembly statistics for collected dust samples. Table S4. Relative abundance of NIAID (National Institute of Allergy and Infectious diseases, NIH, US) defined pathogens in urban and rural schools in Shanxi, China. Table S5. Associations between microbial α-diversity (observed number of species) and wheeze among students (N=1,332) in high schools, Shanxi, China. Table S6 Associations between microbial α-diversity (observed number of species) and breathlessness among students (N=1,332) in high schools, Shanxi, China. Table S7 Associations between microbial α-diversity (observed number of species) and rhinitis among students (N=1,332) in high schools, Shanxi, China. Table S8 Associations between microbial α-diversity (observed number of species) and rhinoconjunctivitis among students (N=1,332) in high schools, Shanxi, China. Table S9 Differentially abundant species between rural and urban high schools in Shanxi, China.
DOI: 10.6084/m9.figshare.14775780
title: Additional file 23 of De novo genome assembly of a foxtail millet cultivar Huagu11 uncovered the genetic difference to the cultivar Yugu1, and the genetic mechanism of imazethapyr tolerance

description: Additional file 23: Table S15. Statistics of gene numbers in the different orthologue groups.
DOI: 10.6084/m9.figshare.14775666
title: Additional file 4 of Indoor bacterial, fungal and viral species and functional genes in urban and rural schools in Shanxi Province, China–association with asthma, rhinitis and rhinoconjunctivitis in high school students

description: Additional file 3: Table S1. School and sample information in this study. Table S2. Sequencing statistics for collected dust samples. Table S3. Assembly statistics for collected dust samples. Table S4. Relative abundance of NIAID (National Institute of Allergy and Infectious diseases, NIH, US) defined pathogens in urban and rural schools in Shanxi, China. Table S5. Associations between microbial α-diversity (observed number of species) and wheeze among students (N=1,332) in high schools, Shanxi, China. Table S6 Associations between microbial α-diversity (observed number of species) and breathlessness among students (N=1,332) in high schools, Shanxi, China. Table S7 Associations between microbial α-diversity (observed number of species) and rhinitis among students (N=1,332) in high schools, Shanxi, China. Table S8 Associations between microbial α-diversity (observed number of species) and rhinoconjunctivitis among students (N=1,332) in high schools, Shanxi, China. Table S9 Differentially abundant species between rural and urban high schools in Shanxi, China.
DOI: 10.5281/zenodo.10635972
title: OpEx estimation model validations
DOI: 10.5281/zenodo.10635973
title: OpEx estimation model validations
DOI: 10.6084/m9.figshare.14775777.v1
title: Additional file 22 of De novo genome assembly of a foxtail millet cultivar Huagu11 uncovered the genetic difference to the cultivar Yugu1, and the genetic mechanism of imazethapyr tolerance

description: Additional file 22: Table S14. Functional annotation of Yugu1 PAV spefific genes with Nr (20170924), KEGG (v89.1), Interpro (interproscan-5.30-69.0) and GO (gene_ontology.1_2) database.
DOI: 10.6084/m9.figshare.13719354
title: Additional file 3 of Development of a prognostic signature for esophageal cancer based on nine immune related genes

description: Additional file 3: Supplementary Table 1. Characteristics of the dataset.
DOI: 10.6084/m9.figshare.19494596
title: GR13-type plasmids in Acinetobacter potentiate the accumulation and horizontal transfer of diverse accessory genes

description: Supplementary Material for 'GR13-type plasmids in <em>Acinetobacter</em> potentiate the accumulation and horizontal transfer of diverse accessory genes', as published in <em>Microbial Genomics.</em>
DOI: 10.13011/m3-xbjb-va37
title: Multiscale in-situ characterization of static recrystallization using dark-field X-ray microscopy and high-resolution X-ray diffraction
DOI: 10.6084/m9.figshare.12154548.v1
title: The AMPK-MFN2 axis regulates MAM dynamics and autophagy induced by energy stresses

description: Energy deprivation activates the cellular energy sensor AMP-activated protein kinase (AMPK), which in turn induces macroautophagy/autophagy. The mitochondrial-associated ER membrane (MAM) plays a key role in mitochondrial division and autophagy, and the mitochondrial fusion protein MFN2 (mitofusin 2) tethers the MAM, but the mechanism by which AMPK and MFN2 regulate autophagy in response to energy stress remains unclear. Here, we found that energy stress not only triggers mitochondrial fission and autophagy, but more importantly increases the number of MAMs, a process that requires AMPK. Interestingly, under energy stress, considerable amounts of AMPK translocate from cytosol to the MAM and the mitochondrion as mitochondrial fission occurs. Unexpectedly, AMPK interacts directly with MFN2. The autophagic ability of mouse embryonic fibroblasts (MEFs) lacking MFN2 (<i>mfn2<sup>−/-</sup></i>) is significantly attenuated in response to energy stress as compared to wild-type MEFs (WT MEFs), while re-expression of MFN2 in <i>mfn2<sup>−/-</sup></i> cells rescues the autophagy defects of these cells. The abundance of MAMs is also greatly reduced in MFN2-deficient cells. Functional experiments show that the oxygen consumption rate and the glycolytic function of cells lacking MFN2 but not MFN1 are obviously attenuated, and MFN2 is important for cell survival under energy stress. In conclusion, our study establishes the molecular link between the energy sensor AMPK and the MAM tether MFN2, and reveals the important role of AMPK and MFN2 in energy stress-induced autophagy and MAM dynamics. <b>Abbreviations:</b> ACTB, actin beta; AMPK, AMP-activated protein kinase; BECN1, beclin 1; CANX, calnexin; ER, endoplasmic reticulum; HRP, horseradish peroxidase; EM, electron microscopy; FL, full-length; KD, kinase dead, KO, knockout; MAb, monoclonal antibody; MAMs, mitochondria-associated membranes; MAP1LC3/LC3B, microtubule associated protein 1 light chain 3; MFN2, mitofusin 2; OPA1, OPA1 mitochondrial dynamin like GTPase; PAb, polyclonal antibody; PtdIns3K, class III phosphatidylinositol 3-kinase; PtdIns3P, phosphatidylinositol 3-phosphate; SD, standard deviation; TEM, transmission electron microscopy; TOMM20, translocase of outer mitochondrial membrane 20; ULK1, unc-51 like autophagy activating kinase 1; MEF, mouse embryonic fibroblast; WT, wildtype
DOI: 10.6084/m9.figshare.13727482
title: Additional file 5 of Association of ABO blood groups with ovarian reserve, and outcomes after assisted reproductive technology: systematic review and meta-analyses

description: Additional file 5: Fig. S4.1 Funnel plot of analysis for the association of blood group A/O and CPR, showing the results of Eggers to assess publication bias. Fig. S4.2 Funnel plot of analysis for the association of blood group B/O and CPR, showing the results of Eggers to assess publication bias. Fig. S4.3 Funnel plot of analysis for the association of blood group AB/O and CPR, showing the results of Eggers to assess publication bias. Fig. S4.4 Funnel plot of analysis for the association of blood group non-O/O and CPR, showing the results of Eggers to assess publication bias.
DOI: 10.6084/m9.figshare.13727476
title: Additional file 3 of Association of ABO blood groups with ovarian reserve, and outcomes after assisted reproductive technology: systematic review and meta-analyses

description: Additional file 3: Fig. S2.1 Funnel plot of analysis for the association of blood group A/O and OHSS, showing the results of Eggers to assess publication bias. Fig. S2.2 Funnel plot of analysis for the association of blood group B/O and OHSS, showing the results of Eggers to assess publication bias. Fig. S2.3 Funnel plot of analysis for the association of blood group AB/O and OHSS, showing the results of Eggers to assess publication bias. Fig. S2.4 Funnel plot of analysis for the association of blood group non-O/O and OHSS, showing the results of Eggers to assess publication bias.
DOI: 10.6084/m9.figshare.13727473
title: Additional file 2 of Association of ABO blood groups with ovarian reserve, and outcomes after assisted reproductive technology: systematic review and meta-analyses

description: Additional file 2: Fig. S1.1 Funnel plot of analysis for the association of blood group A/O and DOR, showing the results of Eggers to assess publication bias. Fig. S1.2 Funnel plot of analysis for the association of blood group B/O and DOR, showing the results of Eggers to assess publication bias. Fig. S1.3 Funnel plot of analysis for the association of blood group AB/O and DOR, showing the results of Eggers to assess publication bias. Fig. S1.4 Funnel plot of analysis for the association of blood group non-O/O and DOR, showing the results of Eggers to assess publication bias.
DOI: 10.6084/m9.figshare.13727473.v1
title: Additional file 2 of Association of ABO blood groups with ovarian reserve, and outcomes after assisted reproductive technology: systematic review and meta-analyses

description: Additional file 2: Fig. S1.1 Funnel plot of analysis for the association of blood group A/O and DOR, showing the results of Eggers to assess publication bias. Fig. S1.2 Funnel plot of analysis for the association of blood group B/O and DOR, showing the results of Eggers to assess publication bias. Fig. S1.3 Funnel plot of analysis for the association of blood group AB/O and DOR, showing the results of Eggers to assess publication bias. Fig. S1.4 Funnel plot of analysis for the association of blood group non-O/O and DOR, showing the results of Eggers to assess publication bias.
DOI: 10.6084/m9.figshare.13719484.v1
title: Additional file 6 of Investigation of carbon and energy metabolic mechanism of mixotrophy in Chromochloris zofingiensis

description: Additional file 6. Unigene sequences of C. zofingiensis ATCC 30412.
DOI: 10.6084/m9.figshare.13727476.v1
title: Additional file 3 of Association of ABO blood groups with ovarian reserve, and outcomes after assisted reproductive technology: systematic review and meta-analyses

description: Additional file 3: Fig. S2.1 Funnel plot of analysis for the association of blood group A/O and OHSS, showing the results of Eggers to assess publication bias. Fig. S2.2 Funnel plot of analysis for the association of blood group B/O and OHSS, showing the results of Eggers to assess publication bias. Fig. S2.3 Funnel plot of analysis for the association of blood group AB/O and OHSS, showing the results of Eggers to assess publication bias. Fig. S2.4 Funnel plot of analysis for the association of blood group non-O/O and OHSS, showing the results of Eggers to assess publication bias.
DOI: 10.6084/m9.figshare.13727479.v1
title: Additional file 4 of Association of ABO blood groups with ovarian reserve, and outcomes after assisted reproductive technology: systematic review and meta-analyses

description: Additional file 4: Fig. S3.1 Funnel plot of analysis for the association of blood group A/O and LBR, showing the results of Eggers to assess publication bias. Fig. S3.2 Funnel plot of analysis for the association of blood group B/O and LBR, showing the results of Eggers to assess publication bias. Fig. S3.3 Funnel plot of analysis for the association of blood group AB/O and LBR, showing the results of Eggers to assess publication bias. Fig. S3.4 Funnel plot of analysis for the association of blood group non-O/O and LBR, showing the results of Eggers to assess publication bias.
DOI: 10.6084/m9.figshare.13727482.v1
title: Additional file 5 of Association of ABO blood groups with ovarian reserve, and outcomes after assisted reproductive technology: systematic review and meta-analyses

description: Additional file 5: Fig. S4.1 Funnel plot of analysis for the association of blood group A/O and CPR, showing the results of Eggers to assess publication bias. Fig. S4.2 Funnel plot of analysis for the association of blood group B/O and CPR, showing the results of Eggers to assess publication bias. Fig. S4.3 Funnel plot of analysis for the association of blood group AB/O and CPR, showing the results of Eggers to assess publication bias. Fig. S4.4 Funnel plot of analysis for the association of blood group non-O/O and CPR, showing the results of Eggers to assess publication bias.
DOI: 10.6084/m9.figshare.13719478
title: Additional file 4 of Investigation of carbon and energy metabolic mechanism of mixotrophy in Chromochloris zofingiensis

description: Additional file 4. The trinity ID, FPKM and log2FCa of genes involved in Fig. 5.
DOI: 10.6084/m9.figshare.13719478.v1
title: Additional file 4 of Investigation of carbon and energy metabolic mechanism of mixotrophy in Chromochloris zofingiensis

description: Additional file 4. The trinity ID, FPKM and log2FCa of genes involved in Fig. 5.
DOI: 10.6084/m9.figshare.19494659
title: Utilization of far-red LED to minimize blue light hazard for dynamic semiconductor lighting

description: The blue light hazard (BLH) and luminous efficacy of a source (ηV) are associated with the photobiological safety and energy saving of light-emitting diodes (LEDs), respectively. In this study, we used genetic algorithm (GA) to optimize the BLH, ηV, and color rendering parameters of five-chip hybrid white LEDs. Based on the optimal results, we used five-chip LEDs to obtain the hybrid white light. Their peak wavelengths were 461.5 (blue), 523.9 (green), 588.2 (orange), 643.3 (red), and 694.2 nm (far-red), respectively. In practice, the blue light hazard efficiency of radiation (BLHER) of the hybrid white light was less than 0.10, which was lower than half of the most common light sources. The ηV ranged from 51.6 to 115.6 lm/W at correlated color temperature (CCT) from 2700 to 6500 K. On average, the CIE general color rendering index (Ra), CIE special color rendering index for the ninth deep red test sample (R9), ANSI/IES TM-30 color fidelity index (Rf), and color gamut index (Rg) of hybrid white light were 91.3, 87.8, 83.3, and 96.7, respectively. The melanopic efficacy of luminous radiation (Kmel,V) was tunable in the range of 0.60 to 1.35 mW/lm. These results demonstrated that we used far-red LEDs to fabricate white light with low BLH and relatively high efficiency.
DOI: 10.6084/m9.figshare.19494659.v1
title: Utilization of far-red LED to minimize blue light hazard for dynamic semiconductor lighting

description: The blue light hazard (BLH) and luminous efficacy of a source (ηV) are associated with the photobiological safety and energy saving of light-emitting diodes (LEDs), respectively. In this study, we used genetic algorithm (GA) to optimize the BLH, ηV, and color rendering parameters of five-chip hybrid white LEDs. Based on the optimal results, we used five-chip LEDs to obtain the hybrid white light. Their peak wavelengths were 461.5 (blue), 523.9 (green), 588.2 (orange), 643.3 (red), and 694.2 nm (far-red), respectively. In practice, the blue light hazard efficiency of radiation (BLHER) of the hybrid white light was less than 0.10, which was lower than half of the most common light sources. The ηV ranged from 51.6 to 115.6 lm/W at correlated color temperature (CCT) from 2700 to 6500 K. On average, the CIE general color rendering index (Ra), CIE special color rendering index for the ninth deep red test sample (R9), ANSI/IES TM-30 color fidelity index (Rf), and color gamut index (Rg) of hybrid white light were 91.3, 87.8, 83.3, and 96.7, respectively. The melanopic efficacy of luminous radiation (Kmel,V) was tunable in the range of 0.60 to 1.35 mW/lm. These results demonstrated that we used far-red LEDs to fabricate white light with low BLH and relatively high efficiency.
DOI: 10.6084/m9.figshare.13719484
title: Additional file 6 of Investigation of carbon and energy metabolic mechanism of mixotrophy in Chromochloris zofingiensis

description: Additional file 6. Unigene sequences of C. zofingiensis ATCC 30412.
DOI: 10.5066/p9blvvq2
title: USGS National and Global Oil and Gas Assessment Project - Sunbury and Chattanooga Shales Assessment Unit Boundaries and Assessment Input Forms

description: The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is defined within the context of the higher-level Total Petroleum System. The Assessment Unit is shown herein as a geographic boundary interpreted, defined, and mapped by the geologist responsible for the province and incorporates a set of known or postulated oil and (or) gas accumulations sharing similar geologic, geographic, and temporal properties within the Total Petroleum System, such as source rock, timing, migration pathways, trapping mechanism, and hydrocarbon type. The Assessment Unit boundary is defined geologically as the limits of the geologic elements that define the Assessment Unit, such as limits of reservoir rock, geologic structures, source rock, and seal lithologies. The only exceptions to this are Assessment Units that border the Federal-State water boundary. In these cases, the Federal-State water boundary forms part of the Assessment Unit boundary.
DOI: 10.6084/m9.figshare.13719481
title: Additional file 5 of Investigation of carbon and energy metabolic mechanism of mixotrophy in Chromochloris zofingiensis

description: Additional file 5. The genome sequence of C. zofingiensis ATCC 30412.
DOI: 10.6084/m9.figshare.13719481.v1
title: Additional file 5 of Investigation of carbon and energy metabolic mechanism of mixotrophy in Chromochloris zofingiensis

description: Additional file 5. The genome sequence of C. zofingiensis ATCC 30412.
DOI: 10.6084/m9.figshare.12671179
title: Additional file 3 of Combined signaling of NF-kappaB and IL-17 contributes to Mesenchymal stem cells-mediated protection for Paraquat-induced acute lung injury

description: Additional file 3.
DOI: 10.6084/m9.figshare.12671176
title: Additional file 2 of Combined signaling of NF-kappaB and IL-17 contributes to Mesenchymal stem cells-mediated protection for Paraquat-induced acute lung injury

description: Additional file 2.
DOI: 10.6084/m9.figshare.12671182
title: Additional file 4 of Combined signaling of NF-kappaB and IL-17 contributes to Mesenchymal stem cells-mediated protection for Paraquat-induced acute lung injury

description: Additional file 4.
DOI: 10.6084/m9.figshare.12671173
title: Additional file 1 of Combined signaling of NF-kappaB and IL-17 contributes to Mesenchymal stem cells-mediated protection for Paraquat-induced acute lung injury

description: Additional file 1.
DOI: 10.6084/m9.figshare.12671185.v1
title: Additional file 5 of Combined signaling of NF-kappaB and IL-17 contributes to Mesenchymal stem cells-mediated protection for Paraquat-induced acute lung injury

description: Additional file 5.
DOI: 10.6084/m9.figshare.12671179.v1
title: Additional file 3 of Combined signaling of NF-kappaB and IL-17 contributes to Mesenchymal stem cells-mediated protection for Paraquat-induced acute lung injury

description: Additional file 3.
DOI: 10.6084/m9.figshare.12671185
title: Additional file 5 of Combined signaling of NF-kappaB and IL-17 contributes to Mesenchymal stem cells-mediated protection for Paraquat-induced acute lung injury

description: Additional file 5.
DOI: 10.6084/m9.figshare.13727557
title: Additional file 6 of Diverse mechanisms activate the PI 3-kinase/mTOR pathway in melanomas: implications for the use of PI 3-kinase inhibitors to overcome resistance to inhibitors of BRAF and MEK

description: Additional file 6: Supplementary Table S6: Variants of genes encoding class II PI3K
DOI: 10.6084/m9.figshare.13727542.v1
title: Additional file 1 of Diverse mechanisms activate the PI 3-kinase/mTOR pathway in melanomas: implications for the use of PI 3-kinase inhibitors to overcome resistance to inhibitors of BRAF and MEK

description: Additional file 1: Supplementary Table S1: Hotspot mutations of genes relating to the PI3K pathway in NZM cell lines.
DOI: 10.6084/m9.figshare.13727551.v1
title: Additional file 4 of Diverse mechanisms activate the PI 3-kinase/mTOR pathway in melanomas: implications for the use of PI 3-kinase inhibitors to overcome resistance to inhibitors of BRAF and MEK

description: Additional file 4: Supplementary Table S4: Variants of genes encoding PI3K-related phosphatases