cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/120869
title: Gyrocompass data collected during research cruise SP1403 using a Furuno Furuno SC-30 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116593
title: Meteorological Station data collected during research cruise SP1403 using a SIO MET-System instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116596
title: Singlebeam Echosounder data collected during research cruise SP1403 using a Knudsen 320B/R instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116594
title: Winch data collected during research cruise SP1403 using a Markey DEYSH-3 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116606
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1405 using a Furuno GP-90D instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120876
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1405 using a Garmin GPS-17HVS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7235924
title: Plant remains from Arundel Square, Waterford

description: CSV table of identified charred plant remains from a settlement in Waterford city, Ireland.<br>
DOI: 10.6084/m9.figshare.7235906
title: Data from Local meteorological conditions reroute a migration

description: Decision and meteorological data generated from the tracking data.
DOI: 10.6084/m9.figshare.7235906.v1
title: Data from Local meteorological conditions reroute a migration

description: Decision and meteorological data generated from the tracking data.
DOI: 10.7284/120875
title: Gyrocompass data collected during research cruise SP1405 using a Furuno Furuno SC-30 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116604
title: Meteorological Station data collected during research cruise SP1405 using a SIO MET-System instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7235831
title: Electronic Supplementary Data: Reflectance spectra for untreated (control) and artificially colored feathers from I see your false colours: how artificial stimuli appear to different animal viewers

description: The use of artificially coloured stimuli, especially to test hypotheses about sexual selection and anti-predator defence, has been common in behavioural ecology since the pioneering work of Tinbergen. To investigate the effects of colour on animal behaviour, many researchers use paints, markers and dyes to modify existing colours or to add colour to synthetic models. Because colour perception varies widely across species, it is critical to account for the signal receiver's vision when performing colour manipulations. To explore this, we applied 26 typical coloration products to different types of avian feathers. Next, we measured the artificially coloured feathers using two complementary techniques—spectrophotometry and digital UV-visible photography—and modelled their appearance to mammalian dichromats (ferret, dog), trichromats (honeybee, human) and avian tetrachromats (hummingbird, blue tit). Overall, artificial colours can have dramatic and sometimes unexpected effects on the reflectance properties of feathers, often differing based on feather type. The degree to which an artificial colour differs from the original colour greatly depends on an animal's colour vision. ‘White’ paint to a human is not ‘white’ to a honeybee or blue tit. Based on our analysis, we offer practical guidelines for reducing the risk of introducing unintended effects when using artificial colours in behavioural experiments.
DOI: 10.7284/116608
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP1406 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7235831.v1
title: Electronic Supplementary Data: Reflectance spectra for untreated (control) and artificially colored feathers from I see your false colours: how artificial stimuli appear to different animal viewers

description: The use of artificially coloured stimuli, especially to test hypotheses about sexual selection and anti-predator defence, has been common in behavioural ecology since the pioneering work of Tinbergen. To investigate the effects of colour on animal behaviour, many researchers use paints, markers and dyes to modify existing colours or to add colour to synthetic models. Because colour perception varies widely across species, it is critical to account for the signal receiver's vision when performing colour manipulations. To explore this, we applied 26 typical coloration products to different types of avian feathers. Next, we measured the artificially coloured feathers using two complementary techniques—spectrophotometry and digital UV-visible photography—and modelled their appearance to mammalian dichromats (ferret, dog), trichromats (honeybee, human) and avian tetrachromats (hummingbird, blue tit). Overall, artificial colours can have dramatic and sometimes unexpected effects on the reflectance properties of feathers, often differing based on feather type. The degree to which an artificial colour differs from the original colour greatly depends on an animal's colour vision. ‘White’ paint to a human is not ‘white’ to a honeybee or blue tit. Based on our analysis, we offer practical guidelines for reducing the risk of introducing unintended effects when using artificial colours in behavioural experiments.
DOI: 10.7284/116611
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1406 using a Furuno GP-90D instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116612
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1406 using a Furuno GP-150 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7235819
title: SM5 from Effects of salinity changes on aquatic organisms in a multiple stressor context

description: Meta-analysis R-scripts
DOI: 10.6084/m9.figshare.7235819.v1
title: SM5 from Effects of salinity changes on aquatic organisms in a multiple stressor context

description: Meta-analysis R-scripts
DOI: 10.6084/m9.figshare.7235822
title: SM1 from Effects of salinity changes on aquatic organisms in a multiple stressor context

description: Literature review of interactive effects and performance effects of salinity-stressor pairs combinations (dataset 1)
DOI: 10.7284/120879
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1406 using a Garmin GPS-17HVS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7235816
title: SM4 from Effects of salinity changes on aquatic organisms in a multiple stressor context

description: Meta-analysis results
DOI: 10.6084/m9.figshare.7235816.v1
title: SM4 from Effects of salinity changes on aquatic organisms in a multiple stressor context

description: Meta-analysis results
DOI: 10.6084/m9.figshare.7235813
title: SM2 from Effects of salinity changes on aquatic organisms in a multiple stressor context

description: Effects size calculations of the individual, main, and interaction effect sizes for each experiment and study from dataset 2 using the Hedge's d according to the methods of the factorial meta-analysis.
DOI: 10.7284/120880
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1406 using a Ashtech ADU2 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7235813.v1
title: SM2 from Effects of salinity changes on aquatic organisms in a multiple stressor context

description: Effects size calculations of the individual, main, and interaction effect sizes for each experiment and study from dataset 2 using the Hedge's d according to the methods of the factorial meta-analysis.
DOI: 10.7284/120878
title: Gyrocompass data collected during research cruise SP1406 using a Furuno Furuno SC-30 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116609
title: Meteorological Station data collected during research cruise SP1406 using a SIO MET-System instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7235795
title: Girdle band optics_data.xls from Differences in the optical properties of valve and girdle band in a centric diatom

description: Transmission and Reflectance data
DOI: 10.7284/116610
title: Winch data collected during research cruise SP1406 using a Markey DEYSH-3 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7235795.v1
title: Girdle band optics_data.xls from Differences in the optical properties of valve and girdle band in a centric diatom

description: Transmission and Reflectance data
DOI: 10.7284/116613
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP1407 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7235789
title: Supplementary Information for Canonical Correspondence Analysis from Sexual dimorphism in a top predator (<i>Notophthalmus viridescens</i>) drives aquatic prey community assembly

description: Intraspecific variation can have important consequences for the structure and function of ecological communities and serves to link community ecology to evolutionary processes. Differences between the sexes are an overwhelmingly common form of intraspecific variation, but its community-level consequences have never been experimentally investigated. Here, we manipulate the sex ratio of a sexually dimorphic predacious newt in aquatic mesocosms, then track their impact on prey communities. Female and male newts preferentially forage in the benthic and pelagic zones, respectively, causing corresponding reductions in prey abundances in those habitats. Sex ratio differences also explained a large proportion (33%) of differences in the composition of entire pond communities. Ultimately, we demonstrate the impact of known patterns of sexual dimorphism in a predator on its prey, uncovering overlooked links between evolutionary adaptation and the structure of contemporary communities. Given the extreme prevalence of sexual dimorphism, we argue that the independent evolution of the sexes will often have important consequences for ecological communities.
DOI: 10.6084/m9.figshare.7235783
title: Data from Intraspecific brain size variation between coexisting sunfish ecotypes

description: Raw data used in this article
DOI: 10.7284/124413
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SP1407 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116616
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1407 using a Furuno GP-90D instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116617
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1407 using a Furuno GP-150 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120882
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1407 using a Garmin GPS-17HVS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120883
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1407 using a Ashtech ADU2 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120881
title: Gyrocompass data collected during research cruise SP1407 using a Furuno Furuno SC-30 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116614
title: Meteorological Station data collected during research cruise SP1407 using a SIO MET-System instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116615
title: Winch data collected during research cruise SP1407 using a Markey DEYSH-3 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116618
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP1408 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116621
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1408 using a Furuno GP-90D instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116622
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1408 using a Furuno GP-150 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120885
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1408 using a Garmin GPS-17HVS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120886
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1408 using a Ashtech ADU2 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7235540
title: MI518

description: Uncharacterized protein
DOI: 10.6084/m9.figshare.7235540.v1
title: MI518

description: Uncharacterized protein
DOI: 10.6084/m9.figshare.7235522
title: Achene dimorphism and protracted release: a trait syndrome allowing continuous reshaping of the seed-dispersal kernel in the Mediterranean species <i>Pallenis spinosa</i>

description: <b>Background</b>: Pallenis spinosa (Asteraceae) produces both winged and wingless achenes. Both achene morphs are non-dormant and show a similar embryo size, rendering dispersal ability as their only apparent functional difference. <b>Aims</b>: We studied morph-specific release and spatial dispersal patterns to ascertain whether the common view of seed dimorphism as a mixed strategy, that is functionally fully differentiated morphs, is appropriate for this system. <b>Methods</b>: For three years, at the onset of achene release, in early autumn, we placed achene traps at different distances from source plants, censusing achene arrival at 3–4 day intervals. We constructed morph-specific dispersal kernels and related release intensity to prevailing meteorological conditions in census intervals. Selected kernel models were used to describe dispersal effects of observed changes in the proportion of winged achenes (<i>p<sub>w</sub></i>) in successive released fractions. <b>Results</b>: Achene release extended up to early-mid winter, peaking in rainy, windy intervals. Throughout the season, <i>p<sub>w</sub></i> decreased progressively. Unexpectedly, the wingless morph produced the longest dispersal tails and it only showed ability for fat-tailed dispersal. Consequently, maximum dispersal distances steadily increased throughout the season. <b>Conclusions</b>: Achene dimorphism in <i>P. spinosa</i> appears to allow a within-season continuous reshaping of the seed-dispersal kernel instead of representing a mixed strategy.
DOI: 10.7284/120884
title: Gyrocompass data collected during research cruise SP1408 using a Furuno Furuno SC-30 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7235522.v1
title: Achene dimorphism and protracted release: a trait syndrome allowing continuous reshaping of the seed-dispersal kernel in the Mediterranean species <i>Pallenis spinosa</i>

description: <b>Background</b>: Pallenis spinosa (Asteraceae) produces both winged and wingless achenes. Both achene morphs are non-dormant and show a similar embryo size, rendering dispersal ability as their only apparent functional difference. <b>Aims</b>: We studied morph-specific release and spatial dispersal patterns to ascertain whether the common view of seed dimorphism as a mixed strategy, that is functionally fully differentiated morphs, is appropriate for this system. <b>Methods</b>: For three years, at the onset of achene release, in early autumn, we placed achene traps at different distances from source plants, censusing achene arrival at 3–4 day intervals. We constructed morph-specific dispersal kernels and related release intensity to prevailing meteorological conditions in census intervals. Selected kernel models were used to describe dispersal effects of observed changes in the proportion of winged achenes (<i>p<sub>w</sub></i>) in successive released fractions. <b>Results</b>: Achene release extended up to early-mid winter, peaking in rainy, windy intervals. Throughout the season, <i>p<sub>w</sub></i> decreased progressively. Unexpectedly, the wingless morph produced the longest dispersal tails and it only showed ability for fat-tailed dispersal. Consequently, maximum dispersal distances steadily increased throughout the season. <b>Conclusions</b>: Achene dimorphism in <i>P. spinosa</i> appears to allow a within-season continuous reshaping of the seed-dispersal kernel instead of representing a mixed strategy.
DOI: 10.7284/116619
title: Meteorological Station data collected during research cruise SP1408 using a SIO MET-System instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116620
title: Winch data collected during research cruise SP1408 using a Markey DEYSH-3 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116623
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SP1409 using a Hawaii UHDAS instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116626
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1409 using a Furuno GP-90D instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7235471.v2
title: HCL DGE Data

description: Single-cell analysis is a valuable tool to dissect cellular heterogeneity in complex systems. Yet, a systematic single-cell atlas has not been achieved for human beings. We used single-cell RNA sequencing to determine cell type composition of all major human organs and construct a basic scheme for the human cell landscape (HCL). We reveal a single-cell hierarchy for many tissues that has not been well characterized previously. We present a ‘‘single-cell HCL analysis’’ pipeline that accurately defines human cell types; and exemplify its utility in stem cell biology. Finally, we perform single-cell comparative analysis for human and mouse cell atlas to reveal the conserved genetic networks in the mammalian system.<b></b><br><b>File Extension Specification</b><b></b><b></b><br><b>HCL_Fig1_adata.h5ad</b>: Use scanpy.api.read_h5ad to load AnnData. This AnnData stores the data used for HCL Figure 1.<b></b><br><b>HCL_Fig1_cell_Info</b>: The information, which includes the cell names, samples, clusters, stages, batches, donors and cell types for cells of data used for HCL Figure 1.<br><b>cluster_markers_HCL&MCA1.1</b>: The cell type annotation and marker genes for 102 HCL clusters of Fig1 and 104 MCA1.1 clusters of SFig. <br><b><br></b><b>dge_raw_data.tar</b>: The raw digital expression matrix (dge) of more than 720,000 single cells sorted by tissues. The batch genes were not removed.<br><b>dge_rmbatch_data.tar</b>: The batch gene removed dge of more than 700,000 primary single cells sorted by tissues. Some tissues are not included due to relatively strong batch effects. This dataset can be used to make global tissue tSNE plot and do cross-tissue analysis.<br><b>annotation_rmbatch_data.tar</b>: The cell annotations, which include cluster ID, belonged tissues, age<b><i> (gestational age for fetal tissue)</i></b>, clusters and cell types for each rmbatch dge data.<br><b>annotation_cluster_info: <i>Modified</i></b> cell type annotation of each cluster in accord with ClusterID in annotation_rmbatch_data.zip<br><b>MCA1.1_adata.h5ad</b>: Use scanpy.api.read_h5ad to load AnnData. This AnnData stores the MCA1.1 data. <br><b>MCA1.1_cell_Info</b>: The information, which includes the cell names, samples, clusters, stages, batches, donors and ce;; types for cells of MCA1.1 data.<br><br>
DOI: 10.7284/116627
title: GNSS (Global Navigation Satellite System) data collected during research cruise SP1409 using a Furuno GP-150 instrument system onboard the platform RV Robert Gordon Sproul

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17028/rd.lboro.7235336
title: Establishments of the Office of Ordnance: Long Eighteenth Century

description: These visualisation were created in Tableau using data in the associated spreadsheet. The visualisations show the establishments of the various Ordnance yards and out-stations as reported in the Establishment Books - they do not show the total number of employees which could be substantially higher at the larger yards.<br>The original information comes from various records in the UK National Archives (reference numbers included in the spreadsheet and visualisations).<br>Latitude and Longitude information (in degrees) was taken from Geonames (https://www.geonames.org/) and then converted into decimal (to four decimal places) to aid mapping. Locations are not specific to the establishment e.g. Portsmouth location is to the city of Portsmouth as given in Geonames rather than the Ordnance Yard.<br>The visualisations show the increase in number and the internationialisation of the Ordnance establishments during the eighteenth century. In the visualisations, the larger the establishment the larger and more blue the locator spot.