cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15125/bath-00323
title: Acoustic backscatter strength and turbulence data from Vobster Quay (24-28 June 2016)
title: Data for "Can small zooplankton mix lakes?"

description: The dataset provides backscatter strength data from a 500-kHz ADCP by Nortek deployed in Vobster Quay, a 40-m quarry in South-West England (UK). Acoustic data shows the Diel Vertical Migration of small zooplankton at dusk and sunrise on 24-28 June 2016. The dataset also contains 10 turbulence profiles acquired with a microstructure profiler (SCAMP, manufactured by PME) in the same lake during the day. The ensemble-averaged profile shows small dissipation of turbulent kinetic energy in the lake interior, where turbulence is generally suppressed by the summer temperature stratification.

Note: This dataset was originally published for a draft of the paper "Can small zooplankton mix lakes?" in Limnology and Oceanography Letters (DOI: 10.1002/lol2.10047). However, the final version of the paper does not refer any more to this dataset. Access to the data is still available upon request.
description: This dataset was originally published for a draft of the paper "Can small zooplankton mix lakes?" in Limnology and Oceanography Letters (DOI: 10.1002/lol2.10047). However, the final version of the paper does not refer any more to this dataset. Access to the data is still available upon request.
DOI: 10.13145/bacdive1822.20240510.9
title: Rhodopseudomonas palustris (Molisch 1907) van Niel 1944 emend. Venkata Ramana et al. 2012

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00316
title: Regenerated Cellulose Hydrogels as Bioaffinity Attachment Supports for Carbohydrate-Binding Module 1

description: Modification of cellulose hydrogels by choice of cellulose and regeneration solvent influences the surface area accessible to a family 1 carbohydrate-binding module, its affinity to the cellulose material and rate of migration through the hydrogel. The hydrogels may be used as support materials in bioaffinity applications but a compromise between accessible surface area and affinity, or migration rate, must be made.
description: Fitted pXRD data may be viewed with Fityk 0.9.8 (free download)
NMR relaxometry data may be viewed using Origin, or Origin Viewer (free download)
Original confocal images may be viewed using ZEN (blue edition) (free download)
description: Further relevant documentation may be found in the following resources.

   Johns, M. A., Bernardes, A., De Azevêdo, E. R., Guimarães, F. E. G., Lowe, J. P., Gale, E. M., Polikarpov, I., Scott, J. L., and Sharma, R. I.,  2017.   On the subtle tuneability of cellulose hydrogels: implications for binding of biomolecules demonstrated for CBM 1.    Journal of Materials Chemistry B, 5(21), 3879-3887.  Available from: https://doi.org/10.1039/c7tb00176b.
DOI: 10.13145/bacdive1827.20240510.9
title: Rhodopseudomonas rhenobacensis Hougardy et al. 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00318
title: Dataset for "Ultrasound Imaging Velocimetry with interleaved images for improved pulsatile arterial flow measurements: a new correction method, experimental and in vivo validation"

description: Blood velocity measurements are important in physiological science and clinical diagnosis. Doppler ultrasound is the most commonly used method but can only measure one velocity component. Ultrasound imaging velocimetry (UIV) is a promising technique capable of measuring two velocity components; however, there is a limit on the maximum velocity that can be measured with conventional hardware which results from the way images are acquired by sweeping the ultrasound beam across the field of view. Interleaved UIV is an extension of UIV in which two image frames are acquired concurrently, allowing the effective inter-frame separation time to be reduced and therefore increasing the maximum velocity that can be measured. The sweeping of the ultrasound beam across the image results in a systematic error which must be corrected: in this work we derived and implemented a new velocity correction method which accounts for acceleration of the scatterers. We then, for the first time, assessed the performance of interleaved UIV for measuring pulsatile arterial velocities by measuring flows in phantoms and in vivo and comparing the results with spectral Doppler ultrasound and transit-time flow probe data. The velocity and flow rate in the phantom agreed within 5-10 % of peak velocity, and 2-9% of peak flow, respectively and in vivo the velocity difference was 9 % of peak velocity. The maximum velocity measured was 1.8 m/s, the highest velocity reported with UIV.  This will allow flows in diseased arteries to be investigated and so has the potential to increase diagnostic accuracy and enable new vascular research.
description: Further relevant documentation may be found in the following resources.

   Fraser, K. H., Poelma, C., Zhou, B., Bazigou, E., Tang, M.-X., and Weinberg, P. D.,  2017.   Ultrasound imaging velocimetry with interleaved images for improved pulsatile arterial flow measurements: a new correction method, experimental and in vivo validation.    Journal of The Royal Society Interface, 14(127), 20160761.  Available from: https://doi.org/10.1098/rsif.2016.0761.
DOI: 10.15125/bath-00322
title: Data for "Phonon anharmonicity, lifetimes, and thermal transport in CH3NH3PbI3 from many-body perturbation theory"

description: Data to accompany the article "Phonon anharmonicity, lifetimes, and thermal transport in CH3NH3PbI3 from many-body perturbation theory".  The data includes a set of input files for the Vienna Ab initio Simulation Package (VASP) electronic-structure code, together with input and output files for the Phonopy and Phono3py packages used to set up and post-process the lattice-dynamics calculations.
description: Further relevant documentation may be found in the following resources.

   Whalley, L. D., Skelton, J. M., Frost, J. M., and Walsh, A.,  2016.   Phonon anharmonicity, lifetimes, and thermal transport in <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mrow><mml:msub><mml:mi>CH</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:msub><mml:mi>NH</mml:mi><mml:mn>3</mml:mn></mml:msub><mml:msub><mm.    Physical Review B, 94(22).  Available from: https://doi.org/10.1103/physrevb.94.220301.  

   Whalley, L. D., Skelton, J. M., Frost, J. M., and Walsh, A.,  2016.   Phonon anharmonicity, lifetimes and thermal transport in CH$_3$NH$_3$PbI$_3$ from many-body perturbation theory.    arXiv.  Available from: https://doi.org/10.48550/ARXIV.1609.00825.
DOI: 10.15125/bath-00324
title: An ongoing role for Wnt signaling in differentiating melanocytes in vivo

description: The accompanying files contain the original data files or code for the studies in the following paper in PCMR:

An ongoing role for Wnt signaling in differentiating melanocytes in vivo.
Laura Vibert1, Gerardo Aquino2, Ines Gehring3, Tatiana Subkhankulova1, Thomas F. Schilling3, Andrea Rocco2 and Robert N. Kelsh1  
Correspondence: Robert Kelsh email: bssrnk@bath.ac.uk
1Developmental Biology Programme, Department of Biology and Biochemistry and Centre for Regenerative Medicine, Claverton Down, University of Bath, Bath, BA2 7AY, UK 
2Department of Microbial and Cellular Sciences, Faculty of Health and Medical Sciences, University of Surrey, Guildford, GU2 7XH, UK
3Developmental and Cell Biology School of Biological Sciences, University of California, Irvine, 4109, Natural Sciences II, Irvine, CA 92697-2300, USA


Please note that all original numerical datasets are included and listed by reference to the original figure in Vibert et al.
description: see Vibert et al, 2016, PCMR
description: Further relevant documentation may be found in the following resources.

   Vibert, L., Aquino, G., Gehring, I., Subkankulova, T., Schilling, T. F., Rocco, A., and Kelsh, R. N.,  2017.   An ongoing role for Wnt signaling in differentiating melanocytes in vivo.    Pigment Cell & Melanoma Research, 30(2), 219-232.  Available from: https://doi.org/10.1111/pcmr.12568.
DOI: 10.13145/bacdive1828.20240510.9
title: Rhodopseudomonas pseudopalustris Venkata Ramana et al. 2012

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00325
title: Data for Quantitative characterisation of imaging fibres

description: Images, code and data used to produce the figures in the paper Quantitative characterisation of imaging fibres.
description: Further relevant documentation may be found in the following resources.

   Wood, H. A. C., Harrington, K., Stone, J. M., Birks, T. A., and Knight, J. C.,  2017.   Quantitative characterization of endoscopic imaging fibers.    Optics Express, 25(3), 1985.  Available from: https://doi.org/10.1364/oe.25.001985.
DOI: 10.15125/bath-00327
title: Strong Rotational Anisotropies Affect Nonlinear Chiral Metamaterials

description: This is the Dataset for paper titled: Strong Rotational Anisotropies Affect Nonlinear Chiral Metamaterials
Produced by David Hooper (d.c.hooper@bath.ac.uk) and Joel Collins (j.collins@bath.ac.uk)
description: •	The folders TI-539A and TI-540A contain SHG continuous polarization data for the left- and right-handed nanohelices, respectively. The data found in these folders is used to produce figures 2c-f, 3, 4 in the manuscript and figures S2-S6 in the supporting information.
o	The subfolders are split into measurements performed at normal incidence and 45 degrees incidence. 
	The subfolders give information about the sample geometry such as the polarizer-analyzer configuration and which parts were rotated.
•	The data files are then named such as 20160218_Pol_0_Ana_0_Sample_0_QWP_0to360Step5_17h07m18s
which should be read as:
DateStamp_PolarizerAngle_AnalyzerAngle_SampleAngle_QWP_Range&Step_TimeStamp
o	There are two columns within each data file. The 1st column contains the angle (in degrees) of the Quarter-wave plate (QWP) over the range and in steps given in the file name. The 2nd column contains the SHG counts per second recorded by the photon counting system. (The zero degree angle means that the fast axis of a component is horizontal with respect to the bench. 90 degrees then means the fast axis is vertical (normal to the bench).  The angle of the components (not sample) is recorded from the frame of reference looking against the direction of propagation, zero on the left-hand side horizontal and the fast axis rotated clockwise. This information should be enough to reconstruct the polarization state incident on the sample.)
•	The folder “Linear Polarization Anisotropy P-in P-out TI540A” contains the data for the continuous polarization measurement displayed in Figure 2a of the paper. These measurements are performed at 45 degrees incidence.
o	The file format is the same as explained above.
•	The “Linear Spectrum” folder contains the data for figures 2b and S1. It contains its own read me file.
DOI: 10.5281/zenodo.13789886
title: loriculus_vernalis_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.13789887
title: loriculus_vernalis_decontaminated_FSCR.fasta.gz
DOI: 10.13145/bacdive1829.20240510.9
title: Salinarimonas rosea Liu et al. 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00329
title: Dataset for Absolute Multilateration between Spheres

description: Simulation code in Matlab and simulation results in Excel for novel interferometer alignment simulation.

These files provide simulation outputs and simulation code for a novel interferometer design described in 
'Absolute multilateration between spheres'
Jody E Muelaner, William Wadsworth, Maria Azini, Glen Mullineux, Ben Hughes and Armin Reichold
Measurement Science and Technology
http://iopscience.iop.org/article/10.1088/1361-6501/aa5a37

All of the simulation outputs used in the paper, together with further explanations are given in a single Excel workbook, amsSimulationOutputs.xlsx. The simulation code is available in a number of Matlab Functions and Scripts. These may also require the geom3D toolbox to be installed. The files contained in this dataset are described in 00-Readme.txt
description: Matlab simulation
description: Results stored in Excel
description: Requires all matlab files to be in the working directory and the geom3D toolbox.
DOI: 10.13145/bacdive1830.20240510.9
title: Salinarimonas ramus Cai et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00331
title: Supporting information for "Valence band structure of ReS2 by Angle Resolved Photoemission Spectroscopy"

description: Datasets contributing to the experimental figures (Figs. 2, 3, 4, 5) of the associated paper are contained here. Also included (code section) are scripts and associated C codes for running the band structure calculations (Figs 5 and 6); within these are the atomic coordinates which lead to the reciprocal space Brillouin Zone of Fig. 1.
description: nano-ARPES (angle resolved photoemission) at the ANTARES beamline, SOLEIL synchrotron, Paris. Contact beamline staff for current information: http://sunset.synchrotron-soleil.fr/sun/
description: IGOR data analysis software and macros which are managed by SOLEIL.
DOI: 10.13145/bacdive1831.20240510.9
title: Brevibacterium casei Collins et al. 1983

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive1832.20240510.9
title: Brevibacterium casei Collins et al. 1983

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00332
title: Supporting information for "Valence band structure of ReSe2 investigated by angle-resolved photoemission spectroscopy"

description: Data here represents raw computational and experimental data for the following work:

ReSe2 and ReS2 are unusual compounds amongst the layered transition metal dichalcogenides as a result of their low symmetry, with a characteristic in-plane anisotropy due to in-plane rhenium ‘chains’. They preserve inversion symmetry independent of the number of layers and, in contrast to more well-known transition metal dichalcogenides, bulk and few-monolayer Re-TMD compounds have been proposed to behave as electronically and vibrational decoupled layers. Here, we probe for the first time the electronic band structure of bulk ReSe2 by direct nanoscale angle-resolved photoemission spectroscopy. We find a highly anisotropic in- and out-of-plane electronic structure, with the valence band maxima located away from any particular high-symmetry direction. The effective mass doubles its value perpendicular to the Re chains and the interlayer van der Waals coupling generates significant electronic dispersion normal to the layers. Our density functional theory calculations, including spin-orbit effects, are in excellent agreement with these experimental findings.
description: Experimental data: angle resolved photoemission (ARPES) at the ANTARES beamline of the SOLEIL synchrotron, Paris

Computational data: generated by the Quantum Espresso code.
description: Experimental data processed via proprietary SOLEIL macros within the commercial Igor data analysis software.
description: SOLEIL macros, Igor code. Contact authors of this paper based at SOLEIL for more information.
DOI: 10.15125/bath-00333
title: Dataset for "Effectiveness of design codes for life cycle energy optimisation"

description: Dataset for the paper Effectiveness of design codes for life cycle energy optimisation

This dataset includes the raw data from the online survey undertaken in October 2015 and analysed in the journal paper “Effectiveness of design codes for life cycle energy optimisation” and published in Energy and Buildings. 

The data were collected via an online survey of 11 questions completed in October 2015.

The data is provided in an Excel format and as a tab delimited text file.
description: Data was collected using an online survey hosted using Google forms and administered by Dr Ana Bras (research associate, University of Bath).
description: Data was reviewed by the authors. 12 invalid and incomplete submissions were removed from the data set by deleting their entire row. The remaining 66 submissions were used in the analysis provided in the journal paper.
description: None.
description: Recommend opening Excel file first.
DOI: 10.13145/bacdive1834.20240510.9
title: Brevibacterium casei Collins et al. 1983

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive1835.20240510.9
title: Brevibacterium casei Collins et al. 1983

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00334
title: Study into the Kinetic Properties and Surface Attachment of a Thermostable Adenylate Kinase

description: Abstract: A thermostable adenylate kinase (tAK) has been used as model protein contaminant on surfaces, so used because residual protein after high temperature wash steps can be detected at extremely low concentrations. This gives the potential for accurate, quantitative measurement of the effectiveness of different wash processes in removing protein contamination. Current methods utilise non-covalent (physisorbtion) of tAK to surfaces, but this can be relatively easily removed. In this study, the covalent binding of tAK to surfaces was studied to provide an alternative model for surface contamination. Kinetic analysis showed that the efficiency of the enzyme expressed as the catalytic rate over the Michaelis constant (kcat/KM) increased from 8.45 ± 3.04 mM-1 s-1 in solution to 32.23 ± 3.20 or 24.46 ± 4.41 mM-1 s-1 when the enzyme was immobilised onto polypropylene or plasma activated polypropylene respectively. Maleic anhydride plasma activated polypropylene showed potential to provide a more robust challenge for washing processes as it retained significantly higher amounts of tAK enzyme than polypropylene in simple washing experiments. Inhibition of the coupled enzyme (luciferase/luciferin) system used for the detection of adenylate kinase activity, was observed for a secondary product of the reaction. This needs to be taken into consideration when using the assay to estimate cleaning efficacy.
description: UV-Vis Luminescence spectroscopy.
IR spectroscopy.
description: Data worked up in Microsoft Excel and presented in Origin Graphing Software.
description: Further relevant documentation may be found in the following resources.

   Hathaway, H.J., Sutton, J.M., and Jenkins, A.T.A.,  2015.   Study into the kinetic properties and surface attachment of a thermostable adenylate kinase.    Biochemistry and Biophysics Reports, 1, 1-7.  Available from: https://doi.org/10.1016/j.bbrep.2015.03.011.
DOI: 10.15125/bath-00335
title: Poly(N-isopropylacrylamide-co-allylamine) (PNIPAM-co-ALA) nanospheres for the thermally triggered release of Bacteriophage K

description: Due to the increased prevalence of resistant bacterial isolates which are no longer susceptible to antibiotic treatment, recent emphasis has been placed on finding alternative modes of treatment of wound infections. Bacteriophage have long been investigated for their antimicrobial properties, yet the utilization of phage therapy for the treatment of wound infections relies on a suitable delivery system. Poly(N-isopropylacrylamide) (PNIPAM) is a thermally responsive polymer which undergoes a temperature dependent phase transition at a critical solution temperature. Bacteriophage K has been successfully formulated with PNIPAM nanospheres copolymerized with allylamine (PNIPAM-co-ALA). By utilizing a temperature responsive polymer it has been possible to engineer the nanospheres to collapse at an elevated temperature associated with a bacterial skin infection. The nanogels were reacted with surface deposited maleic anhydride in order to anchor the nanogels to non-woven fabric. Bacteriophage incorporated PNIPAM-co-ALA nanospheres demonstrated successful bacterial lysis of a clinically relevant bacterial isolate - Staphylococcus aureus ST228 at 37°C, whilst bacterial growth was unaffected at 25°C, thus providing a thermally triggered release of bacteriophage.
description: Dynamic Light Scattering
IR Spectroscopy 
Zeta Potential Measurements
description: Graphs created in Origin
description: Further relevant documentation may be found in the following resources.

   Hathaway, H., Alves, D. R., Bean, J., Esteban, P. P., Ouadi, K., Mark Sutton, J., and Jenkins, A. T. A.,  2015.   Poly(N-isopropylacrylamide-co-allylamine) (PNIPAM-co-ALA) nanospheres for the thermally triggered release of Bacteriophage K.    European Journal of Pharmaceutics and Biopharmaceutics, 96, 437-441.  Available from: https://doi.org/10.1016/j.ejpb.2015.09.013.
DOI: 10.15125/bath-00338
title: Data for "Metastable cubic tin sulfide: a novel phonon-stable chiral semiconductor"

description: Raw data to accompany the article "Metastable cubic tin sulfide: a novel phonon-stable chiral semiconductor".

This dataset contains the optimised crystal structure of pi-cubic SnS, data from the lattice-dynamics calculations including the calculated force constants and phonon spectra, data from the electronic-structure calculations, and the simulated frequency-dependent dielectric function and derived properties.
description: Further relevant documentation may be found in the following resources.

   Skelton, J. M., Burton, L. A., Oba, F., and Walsh, A.,  2017.   Metastable cubic tin sulfide: A novel phonon-stable chiral semiconductor.    APL Materials, 5(3), 036101.  Available from: https://doi.org/10.1063/1.4977868.
DOI: 10.13145/bacdive1838.20240510.9
title: Brevibacterium epidermidis Collins et al. 1983 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive1840.20240510.9
title: Brevibacterium iodinum (ex Davis 1939) Collins et al. 1981

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00340
title: Data for the publication: Reconfigurable superconducting vortex pinning potential for magnetic disks in hybrid structures

description: This dataset contains raw data and images from Marchiori, E. et al. Reconfigurable superconducting vortex pinning potential for magnetic disks in hybrid structures. Sci. Rep. 7, 45182; doi: 10.1038/srep45182 (2017).
description: Further information can be found in the associated article: https://doi.org/10.1038/srep45182
description: Further relevant documentation may be found in the following resources.

   Marchiori, E., Curran, P. J., Kim, J., Satchell, N., Burnell, G., and Bending, S. J.,  2017.   Reconfigurable superconducting vortex pinning potential for magnetic disks in hybrid structures.    Scientific Reports, 7(1).  Available from: https://doi.org/10.1038/srep45182.
DOI: 10.13145/bacdive1841.20240510.9
title: Brevibacterium linens (Wolff 1910) Breed 1953

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.