cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pj5ffe
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anguillosyllis truebloodi Maciolek, 2020"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021639-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/2nnyot
title: Data for the manuscript entitled 'The presence of substrate warrants oxygen access tunnels toward the catalytic site of lipoxygenases'

description: The repository includes molecular dynamics (MD) simulation input files and post-processing scripts relevant to the study presented in the manuscript entitled "The presence of substrate warrants oxygen access tunnels toward the catalytic site of lipoxygenases" by T. Manivarma et al., published in Redox Biology.The MD simulation inputs cover all simulation steps, including a Tcl script that facilitates water penetration into the membrane.The Jupyter Notebook files contain:(i) Analysis of crystallographic waters in LOX family members using WatFinder via the ProDy API.(ii) Analysis of oxygen clusters in PDB frames extracted from the MD simulations.
DOI: 10.6084/m9.figshare.16935708
title: Additional file 13 of High-quality reference genome sequences of two coconut cultivars provide insights into evolution of monocot chromosomes and differentiation of fiber content and plant height

description: Additional file 13: Table S12. Kernel function analysis of Ks distribution related to duplication events within each genome (before evolutionary rate correction).
DOI: 10.6084/m9.figshare.16935756
title: Additional file 2 of High-quality reference genome sequences of two coconut cultivars provide insights into evolution of monocot chromosomes and differentiation of fiber content and plant height

description: Additional file 2: Table S1. Raw sequencing data.
DOI: 10.6084/m9.figshare.13265715.v1
title: Additional file 3 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 3. NBS-encoding genes in pear disease resistance QTL regions. A total of 18 QTL were detected from previous study [13, 16, 17, 22, 33–35]. The primers of SSR markers in QTL were used to detect the marker location on the reference genome [1, 32]. Markers upstream and downstream 500 kbp were selected to identify the presence of NBS genes related to these QTL.
DOI: 10.6084/m9.figshare.16935705.v1
title: Additional file 12 of High-quality reference genome sequences of two coconut cultivars provide insights into evolution of monocot chromosomes and differentiation of fiber content and plant height

description: Additional file 12: Table S11. Kernel function analysis of Ks distribution related to duplication events within each genome and between genomes (after evolutionary rate correction).
DOI: 10.6084/m9.figshare.13265700
title: Additional file 13 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 13. The expression patterns of 338 NBS-encoding genes’ expression in P. calleryana and ‘Hongfen’ pear (P. pyrifolia). Letter ‘Treat_RPKM’ means these genes’ expression in treatment groups (inoculation of A. alternata). Letter ‘CK_RPKM’ means these genes’ expression in control groups. Letter ‘NA’ means no data.
DOI: 10.6084/m9.figshare.13265727
title: Additional file 7 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 7. Ka/Ks ratios of orthologous gene pairs between P. bretschneideri and P. communis. ‘NA’ means no values.
DOI: 10.6084/m9.figshare.13265712
title: Additional file 2 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 2. The information of all NBS-encoding genes in P. bretschneideri and P. communis, including type, location, and length of genomic, coding and protein sequences.
DOI: 10.5281/zenodo.10642280
title: IODP Expedition 390C Moisture and Density

description: Moisture and density (MAD) data were acquired on ~10 mL sediment or rock samples by measuring three out of four material parameters: wet (saturated) mass, wet volume, dry mass, and/or dry volume after 24 h drying in a convection oven at 105 degrees C. From the moisture and volume measurements, the following phase relationships are calculated: wet and dry water content, wet bulk density, dry bulk density, grain density, porosity, and void ratio. The combination of measurements is defined by the submethod chosen: A, B, C, or D. Wet (A, B, or C) and dry (A, B, C, or D) mass is determined using motion-compensated balances.  Wet volume is determined either by helium pycnometry (A) or by the sample's geometric dimensions using calipers (A or D).  Dry volume (C or D) is measured by helium pycnometry.  Submethods A and B are not recommended by IODP.  Submethod C is suitable for saturated materials such as fine-grained sediments.  Submethod D is suitable for unsaturated porous material such as certain limestones and basalts.
DOI: 10.5281/zenodo.10642281
title: IODP Expedition 390C Moisture and Density

description: Moisture and density (MAD) data were acquired on ~10 mL sediment or rock samples by measuring three out of four material parameters: wet (saturated) mass, wet volume, dry mass, and/or dry volume after 24 h drying in a convection oven at 105 degrees C. From the moisture and volume measurements, the following phase relationships are calculated: wet and dry water content, wet bulk density, dry bulk density, grain density, porosity, and void ratio. The combination of measurements is defined by the submethod chosen: A, B, C, or D. Wet (A, B, or C) and dry (A, B, C, or D) mass is determined using motion-compensated balances.  Wet volume is determined either by helium pycnometry (A) or by the sample's geometric dimensions using calipers (A or D).  Dry volume (C or D) is measured by helium pycnometry.  Submethods A and B are not recommended by IODP.  Submethod C is suitable for saturated materials such as fine-grained sediments.  Submethod D is suitable for unsaturated porous material such as certain limestones and basalts.
DOI: 10.6084/m9.figshare.13265724
title: Additional file 6 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 6. Orthologous gene pairs between P. bretschneideri and P. communis. Orthologous gene pairs were identified using MCScanX with default parameters.
DOI: 10.6084/m9.figshare.13265706.v1
title: Additional file 15 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 15. Primer sequences of 17 genes used in RT-qPCR analysis.
DOI: 10.6084/m9.figshare.13265691
title: Additional file 10 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 10. The list of non-synonymous or synonymous significantly different SNPs in Asian and European populations.
DOI: 10.6084/m9.figshare.13265697.v1
title: Additional file 12 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 12. The RPKM values of 338 NBS-encoding genes in four Asian pear accessions at three fruit stages. Letter ‘NA’ means no data.
DOI: 10.6084/m9.figshare.13265700.v1
title: Additional file 13 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 13. The expression patterns of 338 NBS-encoding genes’ expression in P. calleryana and ‘Hongfen’ pear (P. pyrifolia). Letter ‘Treat_RPKM’ means these genes’ expression in treatment groups (inoculation of A. alternata). Letter ‘CK_RPKM’ means these genes’ expression in control groups. Letter ‘NA’ means no data.
DOI: 10.6084/m9.figshare.13265712.v1
title: Additional file 2 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 2. The information of all NBS-encoding genes in P. bretschneideri and P. communis, including type, location, and length of genomic, coding and protein sequences.
DOI: 10.6084/m9.figshare.13265718
title: Additional file 4 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 4. Duplication categories of NBS-encoding genes in P. bretschneideri and P. communis. Five duplication categories (Singleton, Dispersed, Proximal, Tandem and WGD) were displayed.
DOI: 10.6084/m9.figshare.13265733
title: Additional file 9 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 9. Significantly different SNPs between Asian (European) cultivated and wild groups. ‘0/0’ means a homozygous reference site, ‘0/1’ means a heterozygous site with two alleles (reference and variant) and ‘1/1’ means a homozygous variant site. ‘./.’ means no data. Chi-square test was used to evaluate the significantly (p-value &lt; 0.01) different SNPs between cultivated and wild groups.
DOI: 10.6084/m9.figshare.16935795
title: Additional file 1 of BDdb: a comprehensive platform for exploration and utilization of birth defect multi-omics data

description: Additional file 1: Table S1. The basic information of collected datasets.
DOI: 10.6084/m9.figshare.13265721.v1
title: Additional file 5 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 5. Ka/Ks ratios of paralogous gene pairs in P. bretschneideri and P. communis. Paralogous gene pairs were identified using MCScanX with default parameters. ‘NA’ means no values.
DOI: 10.6084/m9.figshare.13265730.v1
title: Additional file 8 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 8. The value of nucleotide diversity (π) and FST within 1 kilobase sliding windows and step size of 500 bases across the whole NBS-encoding gene family from different populations.
DOI: 10.6084/m9.figshare.16935798
title: Additional file 2 of BDdb: a comprehensive platform for exploration and utilization of birth defect multi-omics data

description: Additional file 2: Table S2. The summary of biomarkers related to birth defects.
DOI: 10.6084/m9.figshare.13265721
title: Additional file 5 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 5. Ka/Ks ratios of paralogous gene pairs in P. bretschneideri and P. communis. Paralogous gene pairs were identified using MCScanX with default parameters. ‘NA’ means no values.
DOI: 10.6084/m9.figshare.13265724.v1
title: Additional file 6 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 6. Orthologous gene pairs between P. bretschneideri and P. communis. Orthologous gene pairs were identified using MCScanX with default parameters.
DOI: 10.6084/m9.figshare.16935795.v1
title: Additional file 1 of BDdb: a comprehensive platform for exploration and utilization of birth defect multi-omics data

description: Additional file 1: Table S1. The basic information of collected datasets.
DOI: 10.6084/m9.figshare.13265733.v1
title: Additional file 9 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 9. Significantly different SNPs between Asian (European) cultivated and wild groups. ‘0/0’ means a homozygous reference site, ‘0/1’ means a heterozygous site with two alleles (reference and variant) and ‘1/1’ means a homozygous variant site. ‘./.’ means no data. Chi-square test was used to evaluate the significantly (p-value &lt; 0.01) different SNPs between cultivated and wild groups.
DOI: 10.6084/m9.figshare.13265730
title: Additional file 8 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 8. The value of nucleotide diversity (π) and FST within 1 kilobase sliding windows and step size of 500 bases across the whole NBS-encoding gene family from different populations.
DOI: 10.6084/m9.figshare.13265727.v1
title: Additional file 7 of Contrasting genetic variation and positive selection followed the divergence of NBS-encoding genes in Asian and European pears

description: Additional file 7. Ka/Ks ratios of orthologous gene pairs between P. bretschneideri and P. communis. ‘NA’ means no values.
DOI: 10.15468/dl.f8xspz
title: Occurrence Download

description: A dataset containing 634 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diapensia lapponica L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America, Canada)"
 ]
}

 The dataset includes 634 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0269892-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjrbue
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemidactylus romeshkanicus Torki, 2011"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004548-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3tjnd
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carlito syrichta (Linnaeus, 1758)"
 ]
}

 The dataset includes 232 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010701-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ren68
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-101.16211 24.36711,-77.95898 24.36711,-77.95898 34.01624,-101.16211 34.01624,-101.16211 24.36711))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Spartina spartinae (Trin.) Merr."
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067169-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azhca7
title: Occurrence Download

description: A dataset containing 53023 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia absinthium L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 53023 records from 482 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027810-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7d8fvb
title: Occurrence Download

description: A dataset containing 106946 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kyphosidae"
 ]
}

 The dataset includes 106946 records from 276 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085215-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ew3x2
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "VerbatimScientificName is Caragana jubata"
 ]
}

 The dataset includes 180 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0231045-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sawync
title: Occurrence Download

description: A dataset containing 393 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thymophylla tenuiloba (DC.) Small"
 ]
}

 The dataset includes 393 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008428-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvjvfn
title: Occurrence Download

description: A dataset containing 329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 061b4f20-f241-11da-a328-b8a03c50a862",
 "TaxonKey is Aeschynanthus Jack"
 ]
}

 The dataset includes 329 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051783-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c88nz2
title: Occurrence Download

description: A dataset containing 1053 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gymnocarpium jessoense (Koidz.) Koidz.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1053 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0320146-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f79fza
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bolitoglossa phalarosoma Wake & Brame, 1962"
 ]
}

 The dataset includes 27 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043479-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m4dttf
title: Occurrence Download

description: A dataset containing 406 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is CAS Entomology (ENT)",
 "TaxonKey is Chrysobothris mali Horn, 1886"
 ]
}

 The dataset includes 406 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259984-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zb1qwo
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "TaxonKey is Manis javanica Desmarest, 1822"
 ]
}

 The dataset includes 31 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008428-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ufj3j
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Ligularia petiolaris Hand.-Mazz."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299069-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kka6k
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bolitoglossa pandi Brame & Wake, 1963"
 ]
}

 The dataset includes 47 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043478-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ht2hwa
title: Occurrence Download

description: A dataset containing 957 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-142.63961 -19.45584,-15.36039 -19.45584,-15.36039 31.45584,-142.63961 31.45584,-142.63961 -19.45584))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Blepharodon mucronatum (Schltdl.) Decne."
 ]
}

 The dataset includes 957 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071907-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3njkuh
title: Occurrence Download

description: A dataset containing 907 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "OccurrenceStatus is Present",
 "TaxonKey is Aporrectodea caliginosa (Savigny, 1826)"
 ]
}

 The dataset includes 907 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240132-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mjrxy
title: Occurrence Download

description: A dataset containing 70905 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ursus Linnaeus, 1758"
 ]
}

 The dataset includes 70905 records from 403 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287591-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xeccp9
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pithecophaga jefferyi Ogilvie-Grant, 1896"
 ]
}

 The dataset includes 166 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010705-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3negtj
title: Occurrence Download

description: A dataset containing 395 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lynx pardinus (Temminck, 1827)"
 ]
}

 The dataset includes 395 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081617-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.