cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.33656/6
title: Poospiza thoracica, isolate SC04, UCE data, raw sequences, end 2

description: Raw sequences resulting from sequence capture of 634 UCE loci obtained from Poospiza thoracica, isolate SC04. End 2 from Illumina paired-end run.
DOI: 10.5061/dryad.33656/7
title: Poospiza cabanisi, isolate FRA67, assembly

description: Trinity assembly based on data from sequence capture of 643 UCE loci of Poospiza cabanisi, isolate FRA67.
DOI: 10.5061/dryad.33656/8
title: Poospiza lateralis, isolate FRA46, assembly

description: Trinity assembly based on data from sequence capture of 643 UCE loci of Poospiza lateralis, isolate FRA46.
DOI: 10.5061/dryad.3b17f/1
title: Data base

description: Latency time (in seconds) and event (bite=1 or not=0) measured in the four species evaluated in the study (Chromis chromis, Coris julis, Serranus scriba and Diplodus annularis) at different distances (in m) to the no-take of Palma Bay. The covariates of the habitat (PCA1 and PCA2) and density of other fish are also included.
DOI: 10.5061/dryad.7nm09/13
title: StDev_LAI_data

description: Average yearly standard deviation (i.e., seasonality) of LAI calculated across years from satellite imagery.
DOI: 10.5061/dryad.7nm09/15
title: Spatial observed point data

description: Point data used to extract environmental data from observed species localities. Data are largely sourced from OZCAM, with some additional locations confirmed by DL Edwards.
DOI: 10.5061/dryad.83kd9/1
title: G_leucogaster_phylogeography_dryad

description: The compressed folder includes the following: a) sequence alignments for all individuals and loci, b) .xml files used for BEAST analyses (divergence time estimates and extended Bayesian skyline plot), c) MAXENT parameter files, d) spatial diffusion analysis parameter files, and D) STUCTURE parameter file.
DOI: 10.5061/dryad.8654h/3
title: Mitchell and Bergmann Moisture Posture Data
DOI: 10.5061/dryad.8654h/4
title: Mitchell and Bergmann Moisture Pref Data
DOI: 10.5061/dryad.8654h/5
title: Mitchell and Bergmann Thermal Posture Data
DOI: 10.5061/dryad.8654h/6
title: Mitchell and Bergmann Thermal Pref Data
DOI: 10.5061/dryad.ch06v/1
title: Data for the response and predictor variables used in the statistical analysis of this study
DOI: 10.5061/dryad.g44c1/10
title: Bayesian phylogenetic tree file for using control region 1st domain

description: Bayesian phylogenetic tree file for rock wren (Xenicus gilviventris) using control region 1st domain (Figure ).
DOI: 10.5061/dryad.g44c1/11
title: Bayesian phylogenetic tree file - beta fibrinogen intron 7

description: Bayesian phylogenetic tree file for rock wren (Xenicus gilviventris) using beta fibrinogen intron 7 (Figure 5).
DOI: 10.5061/dryad.g44c1/12
title: Maximum likelihood β-fibrinogen tree file

description: Maximum likelihood phylogeny of rock wren (Xenicus gilviventris) using the nuclear β-fibrinogen intron-7.
DOI: 10.5061/dryad.g44c1/13
title: Maximum parsimony tree file using nuclear β-fibrinogen intron-7.

description: Maximum parsimony phylogeny of rock wren (Xenicus gilviventris) using the nuclear β-fibrinogen intron-7.
DOI: 10.5061/dryad.g44c1/14
title: Maximum Likelihood tree file using cytochrome b

description: Maximum likelihood  phylogeny of rock wren (Xenicus gilviventris) using cytochrome b
DOI: 10.5061/dryad.g44c1/15
title: Maximum parsimony tree file using cytochrome b

description: Maximum parsimony phylogeny of rock wren (Xenicus gilviventris) using cytochrome b
DOI: 10.5061/dryad.g44c1/16
title: Maximum likelihood phylogeny tree file using 1st domain of the control region.

description: Maximum likelihood phylogeny of rock wren (Xenicus gilviventris) using the 1st domain of the control region.
DOI: 10.5061/dryad.g44c1/8
title: Bayesian cytochrome b phylogenetic tree file for rock wren (Xenicus gilviventris)

description: Bayesian cytochrome b phylogenetic tree file for rock wren (Xenicus gilviventris) using BEAST
DOI: 10.5061/dryad.g44c1/9
title: Bayesian phylogenetic tree file using control region (1126-bp)

description: Bayesian phylogenetic tree file for rock wren (Xenicus gilviventris) using control region (1126-bp) (Figure S1).
DOI: 10.5061/dryad.ng720.2
title: Data from: Perceptual expertise in forensic facial image comparison
DOI: 10.5061/dryad.qj177/1
title: asterids-cpmtnuc

description: Sequence alignment of 76 plastid genes, six mitochondrial genes, and three nuclear repeat regions for 62 asterid taxa plus 3 outgroups
DOI: 10.5061/dryad.qj177/2
title: asterids-matK

description: Sequence alignment of the plastid matK gene for 62 asterid taxa plus 3 outgroups
DOI: 10.5061/dryad.qj177/3
title: asterids-rbcL

description: Sequence alignment of the plastid rbcL gene for 62 asterid taxa plus 3 outgroups
DOI: 10.5061/dryad.r3cr7/1
title: Study 1

description: Data is gathered from publicly available data bases and compiled with the software package SPSS. (Canton_ID = Switzerland Canton name, RDI=relative disposable income, seats=seats in national parliament, totvote = total votes per canton, Yes_percentage=percentage that vote yes)
DOI: 10.5061/dryad.r3cr7/2
title: Study 2

description: Data is collected through surveys and compiled with the software package SPSS.Datafile contains item pertaining to Opposition to Immigration (OTI).
DOI: 10.5061/dryad.r3cr7/3
title: Study 3

description: Data is collected through surveys and compiled with the software package SPSS. Containing similar items to Study 2.
DOI: 10.5061/dryad.r3cr7/4
title: Study 4

description: Data is collected through surveys and compiled with the software package SPSS.  (Preseco=present economy, futeco=future economy, pasterco=past economy)
DOI: 10.5061/dryad.rq122/1
title: Trait measurements and pedigrees for Cape Race brook trout populations

description: Individual trait measurements and pedigrees used in animal models to estimate quantitative genetic parameters for fifteen traits for nine brook trout populations from Cape Race, Newfoundland, Canada.
DOI: 10.5061/dryad.rq122/2
title: Cape Race breeding design summary

description: A table summarizing, per population, the number of females and males used to generate families as well as the range and mean number of crosses per male for the common garden experiment used to estimate quantitative genetic parameters for Cape Race brook trout populations.
DOI: 10.5061/dryad.s181n/1
title: data_Tgu2_genotypes

description: “data_Tgu2_genotypes.txt” contains genotypes and additional information on all individuals used in the current study for the driving locus on chromosome Tgu2 (SNP rs82439854).
DOI: 10.5061/dryad.s181n/2
title: data_Tgu5_genotypes

description: “data_Tgu5_genotypes.txt” contains genotypes and additional information on all individuals used in the current study for the driving locus on chromosome Tgu5 (SNP rs82439270).
DOI: 10.5061/dryad.s181n/3
title: results_TransmissionDistortion_CombinedSexes

description: “results_TransmissionDistortion_CombinedSexes.txt” contains results of binomial tests for transmission distortion for every SNP for the combined-sexes scan.
DOI: 10.5061/dryad.s181n/4
title: results_TransmissionDistortion_Females

description: “results_TransmissionDistortion_Females.txt” contains results of binomial tests for transmission distortion for every SNP for the female-specific scan.
DOI: 10.5061/dryad.s181n/5
title: results_TransmissionDistortion_Males

description: “results_TransmissionDistortion_Males.txt” contains results of binomial tests for transmission distortion for every SNP for the male-specific scan.
DOI: 10.5061/dryad.s181n/6
title: results_TransmissionDistortion_HetFemalesOnly

description: “results_TransmissionDistortion_HetFemalesOnly.txt” contains results of binomial tests for transmission distortion for every SNP for the female-specific scan excluding those pairs in which both female and male are heterozygous.
DOI: 10.5061/dryad.s181n/7
title: results_TransmissionDistortion_HetMalesOnly

description: “results_TransmissionDistortion_HetMalesOnly.txt” contains results of binomial tests for transmission distortion for every SNP for the male-specific scan excluding those pairs in which both female and male are heterozygous.
DOI: 10.5061/dryad.s181n/8
title: data_simulation_GenomeWideTransmissionDistortion

description: “data_simulation_GenomeWideTransmissionDistortion” is the input file for the genome-wide test for transmission distortion.
DOI: 10.5061/dryad.s181n/9
title: simulation_GenomeWideTransmissionDistortion

description: “simulation_GenomeWideTransmissionDistortion.r” contains the script for the simulation used to test for genome-wide transmission distortion.
DOI: 10.5061/dryad.v4b8n/1
title: Nests
DOI: 10.5061/dryad.v4b8n/2
title: Young
DOI: 10.5061/dryad.v4b8n/3
title: Cuckolds
DOI: 10.5061/dryad.0hm4r/1
title: Mathematica notebook used to make NK landscapes

description: This is a Mathematica notebook containing code to construct NK landscapes and the corresponding mean fitness trajectories.
DOI: 10.5061/dryad.1n0g6/1
title: Supplementary Data set 1

description: Transposable element insertion predictions relative to the CC-503 reference assembly based on RetroSeq (Kean et al. 2013).
DOI: 10.5061/dryad.1n0g6/2
title: Supplementary Data set 2

description: Structural variant predictions based on the paired-end mapping (PEM) approach of SVDetect (Zeitouni et al. 2010).
DOI: 10.5061/dryad.1n0g6/3
title: Supplementary Data set 3

description: Summary of protein coding diversity in field isolates of C. reinhardtii.  Table includes πN, πS, πN/πS and nonsynonymous and synonymous SNP counts per gene.
DOI: 10.5061/dryad.1n0g6/4
title: Supplementary Data set 4

description: Summary of πN and πS in field isolates of C. reinhardtii by functional category.
DOI: 10.5061/dryad.1n0g6/5
title: Supplementary Data set 5

description: Genes with nonsense SNPs and the corresponding genotypes in field isolates and laboratory reference strains of C. reinhardtii.
DOI: 10.5061/dryad.1n0g6/6
title: Supplementary Data set 6

description: Summary of gene deletion or partial deletion polymorphisms. A gene is listed if at least one of the 20 strains shows a deletion or partial deletion following the coverage breadth criteria described in the Supplemental data. If some strains have partial deletions and others a deletion, the gene is listed as a deletion. The coverage breadth matrix used to infer deletions is available as Supplemental Data Set 7.
DOI: 10.5061/dryad.1n0g6/7
title: Supplementary Data set 7

description: Coverage breadth matrix used to infer partial and complete gene deletions in field isolates and laboratory reference strains of C. reinhardtii.  Coverage breadths are listed for each mRNA in the Creinhardtii_236_gene_exons.gff3 annotation.
DOI: 10.5061/dryad.27kk4/1
title: Eye diameter, body length, and clutch size measurements for D. obtusa isolated from Knobby Knees Pond, Congaree National Park, South Carolina

description: Eye diameter (um), body length (um), and clutch size (number of eggs) measurements on a wild population of Daphnia obtusa from Knobby Knees (KNB) Pond, Congaree National Park, South Carolina. Each data row corresponds to the associated measures for a single D. obtusa from KNB Pond. Clutch size was measured from living individuals within 36 hours of capture. Animals were immediately preserved in ethanol and marked following clutch counts. Eye diameter and body length were then measured on preserved individuals.
DOI: 10.5061/dryad.3023m/8
title: 1 RAD-seq project info V2
DOI: 10.5061/dryad.33656/10
title: 650 probe set used to capture 643 UCE loci

description: 650 probes
DOI: 10.5061/dryad.33656/9
title: Poospiza thoracica, isolate SC04, assembly

description: Trinity assembly based on data from sequence capture of 643 UCE loci of Poospiza thoracica, isolate SC04.
DOI: 10.5061/dryad.362s5/1
title: Momigliano et al 2015 Microsatellite Dataset

description: Dataset containing: 1) sampling location and sex of every individual 2) microsatellite genotypes of all individuals  and GenBank accession numbers for ND4 sequences
DOI: 10.5061/dryad.3b77f/1
title: File 1_Genbank accessions list for cytochrome b and mitochondrial genomes

description: Genbank accessions, species and source localities of sequences from previously published studies that were used in the cytochrome b (Cytb) and/or mitochondrial genome (mitogenome) phylogenetic analyses.
DOI: 10.5061/dryad.4n15b/1
title: I.hexagona snp calls, gps coordinates, and trait measurements

description: This zipped dataset set includes three files: 1) hapmap, 2) trait measurements, and 3) GPS units for collection sites
DOI: 10.5061/dryad.4nd2j/1
title: Body size estimates of fossil mammals

description: Estimates of body size for fossil mammals, with geological age and taxonomic position, as well as information on the methods and source publications used to obtain each estimate.
DOI: 10.5061/dryad.4nd2j/2
title: OSM2

description: Phylogenetic tree of mammals with fossil species for which body size estimates were available added.
DOI: 10.5061/dryad.7p1c5/1
title: Meta and tumor data

description: File includes genotype and treatment data as well as tumor, weight, MRI, glucose, insulin and colonic cytokine data
DOI: 10.5061/dryad.7p1c5/2
title: OTU table

description: QIIIME output showing relative abundance of bacterial taxa in stool from each mouse
DOI: 10.5061/dryad.7p1c5/3
title: Stool metabolites

description: Scaled and imputed metabolomics data for stool samples
DOI: 10.5061/dryad.8j60q/2
title: Open Tree Taxonomy v 2.8

description: When unpacked, contains files for the Open Tree Taxonomy. Also contains a separate README with more information.
DOI: 10.5061/dryad.8j60q/3
title: List of input phylogenies for synthetic tree

description: Ranked list of input phylogenies, including publication metadata, tree metadata, study ID, tree ID
DOI: 10.5061/dryad.8j60q/4
title: Processed source trees

description: Input trees, post-processing, in newick format. Tip labels are Open Tree Taxonomy IDs.
DOI: 10.5061/dryad.8j60q/5
title: Input trees, decomposed into subproblems

description: Input trees, decomposed into subproblems, where the root of each subproblem is a taxon that is uncontested by the set of tree + taxonomy inputs.
DOI: 10.5061/dryad.8j60q/6
title: Open Tree of Life draft tree v. 3.0

description: The Open Tree of Life synthetic tree in newick format, with tip labels as Open Tree Taxonomy IDs.
DOI: 10.5061/dryad.90317/1
title: Results of numerical experiments of the agent-based model describing the life-cycle of human social groups
DOI: 10.5061/dryad.c85gk/1
title: Total phenolic compounds and microbial biomarkers

description: Total amount of phenolics, flavonoids, ergosterol and muramic acid in invaded and non-invaded soils.  MA- Massachusetts; NY-New York; NC-North Carolina; (F)-Forest; (O)-Oldfield; IN- Invaded soil;	OU-Non-invaded soil
DOI: 10.5061/dryad.c85gk/2
title: Litter phenolics

description: Total amount of mono-phenols, flavonoids and tannins that were extracted with water, methanol, and mild base hydrolysis (ester-bound) from senesced tissues of knotweed. MA- Massachusetts; NY-New York; NC-North Carolina; (F)-Forest; (O)-Oldfield; IN- Invaded soil;	OU-Non-invaded soil
DOI: 10.5061/dryad.c85gk/3
title: Monophenolics

description: Amount of mono-phenolic compounds extracted from invaded and non-invaded soils using various extraction methods. MA- Massachusetts; NY-New York; NC-North Carolina; (F)-Forest; (O)-Oldfield; IN- Invaded soil;	OU-Non-invaded soil
DOI: 10.5061/dryad.c85gk/4
title: Soil Enzymes

description: Apparent activities of various soil enzymes in invaded and non-invaded soils. MA- Massachusetts; NY-New York; NC-North Carolina; (F)-Forest; (O)-Oldfield; IN- Invaded soil;	OU-Non-invaded soil
DOI: 10.5061/dryad.c85gk/5
title: DRIFT

description: Diffuse Reflectance Infrared Fourier Transform Spectroscopy data after processing (second order dervatization and relative intensity calculations). MA- Massachusetts; NY-New York; NC-North Carolina; (F)-Forest; (O)-Oldfield; IN- Invaded soil;	 OU-Non-invaded soil
DOI: 10.5061/dryad.cr4d7/1
title: Raw Data and Average statistics

description: In this excel book you can find the raw data for the three populations analyzed in each continent (Europe and South America) and the two generations of the European populations analyzed (6 and 25). Additionally, there are also tables with the basic statistics (average and standard deviation) of centroid size and wing shape for each inversion analyzed, separated by replicate population and generation.
DOI: 10.5061/dryad.cr4d7/2
title: Simulations and Bootstrap

description: R code used to generate the simulations of the association between centroid size and standard dose and the bootstrap of the observed associations.
DOI: 10.5061/dryad.g31g3/1
title: Data
DOI: 10.5061/dryad.g44c1/17
title: Maximum parsimony phylogeny tree file using 1st domain of the control region.

description: Maximum parsimony phylogeny of rock wren (Xenicus gilviventris) using the 1st domain of the control region.
DOI: 10.5061/dryad.g44c1/18
title: Maximum likelihood phylogeny tree file using the mtDNA control region.

description: Maximum likelihood phylogeny of rock wren (Xenicus gilviventris) using the mtDNA control region.
DOI: 10.5061/dryad.jg2k4/1
title: GLM data for Jacobsen et al Priority effects of early successional insects influence late successional fungi in dead wood

description: The Fungi data sheet includes, divided by site, presence-absence data from 2013 for the species of fungi analysed in the article (G.applanatum13, P.tremulae13 and B.citrina13), presence-absence data for the fungi registered in 2005 (S.paradoxa05, T.betulina05, C.unicolor05, T.hirsuta05, P.tremulae05), number of sampled individuals during 2002-2005 of wood-boring beetles with preference for deciduous wood in total (Wood-borers) and divided by family (wCerambycidae, wCurculionidae and wPtinidae), of fungivores with a preference for deciduous wood divided by family (fCiidae, fErotylidae, fEndomychidae, fLatridiidae, fLeiodidae, fPtinidae, fStaphylinidae and fNitidulidae), of the single species tested for the article (A.nigripenne, A.humeralis, G.quadripunctatus, G.hortensis) and average percent (0-1) remaining bark on the aspen high stump and log in 2005 (Site_bark). Additionally, site ID, x and y coordinates, habitat type (Open/Closed) and study landscape (Losby/LV) of each site is recorded. The Bark data sheet includes percent bark (0-1) remaining at each highstump and log at each site in 2005, presence-absence data of B.citrina in 2013 for each highstump and log at each site, dead wood object (snag=high stump/log), site ID, x and y coordinates, habitat type (Open/Closed) and study landscape (Losby/LV).
DOI: 10.5061/dryad.jm7jc/1
title: Merops apiaster burrow (re)-occupation

description: 10 years of individually followed burrows and their (re)-occupation patterns in a German population of the European bee-eater Merops apiaster
DOI: 10.5061/dryad.mr909/1
title: WisconsinVariables

description: Explanatory and response variables for the regression and RDA analyses. Excel file includes geographic coordinates, first two sPCA axes scores, landscape variables, Wisconsin River, and level 3 Ecoregion categories for each individual.
DOI: 10.5061/dryad.mr909/2
title: WIGenotypes

description: Genotypes of all Wisconsin badgers in Genepop file format. All simulated populations had the same file format. For adegent to run correctly, this file must have a .gen extension, but diveRsity uses .txt.
DOI: 10.5061/dryad.mr909/3
title: WI_DryadCode

description: All R code for analyses including spatial autocorrelation, sPCA calculations, genetic diversity metrics, redundancy analysis, and spatial regressions.
DOI: 10.5061/dryad.n14pn/1
title: Normalized quantitative PCR delta smelt data

description: These are the normalized values for all qPCR data from thermal stress experiments presented in the forthcoming Molecular Ecology paper. All analyses on these data were conducted in R (see corresponding script files).
DOI: 10.5061/dryad.n14pn/2
title: Komoroske_dryad_qPCR_analysis
DOI: 10.5061/dryad.ng720.1
title: Data from: Perceptual expertise in forensic facial image comparison
DOI: 10.5061/dryad.ng720.2/2.2
title: Fusion simulation analysis aROC data

description: This file contains a tab for each group in each condition of the EFCT. In each tab are the individual group aROC scores used to compute the mean aROC scores that are plotted in Figure 4.
DOI: 10.5061/dryad.ng720.2/3.2
title: Test performance by subject

description: Percent correct on the GFMT; aROC scores for EFCT and PICT
DOI: 10.5061/dryad.qj177/4
title: asterids-rbcLmatK

description: Sequence alignment of concatenated plastid rbcL and matK genes for 62 asterid taxa plus 3 outgroups
DOI: 10.5061/dryad.rq122/3
title: Quantitative genetic parameter values and QST values for Cape Race brook trout populations

description: Quantitative genetic parameter values (QGV) and QST values for fifteen traits for nine brook trout populations estimated from animal models and used to generate figures and in statistical analyses.
DOI: 10.5061/dryad.rq122/4
title: R code for animal models and statistical analyses

description: Examples of R code specifying animal models to estimate quantitative genetic parameters and QST using the software package "MCMCglmm", as well as code for generating the posterior distribution of Pearson's correlation coefficient and for simple and partial Mantel tests (software package "vegan").
DOI: 10.5061/dryad.v4b8n/4
title: Occupancy
DOI: 10.5061/dryad.v4b8n/5
title: WPM_EPM
DOI: 10.5061/dryad.02pr5/1
title: PLINK MAP file for 271 genome-wide SNPs

description: PLINK MAP file containing chromosomal locations of 271 SNPs that passed quality control.
DOI: 10.5061/dryad.02pr5/2
title: SNP genotypes of 695 red grouse individuals

description: Tab-delimited text file containing SNP genotypes for 695 samples, in truncated PLINK PED format.
DOI: 10.5061/dryad.02pr5/3
title: Metadata (sampling-related and phenotype data) for 695 red grouse individuals

description: Tab-delimited text file containing sampling-related and phenotype data for 695 individuals.
DOI: 10.5061/dryad.0hm4r/2
title: NK landscapes with N=10 and K=1

description: 1000 NK landscapes with N=10 and K=1. Comma separated values. First line gives genotypes as binary strings; each subsequent line corresponds to one fitness landscape and gives the fitness values for each genotype. Mean fitness trajectories were calculated starting from the genotype with all sites equal to zero.
DOI: 10.5061/dryad.0hm4r/3
title: NK landscapes with N=10 and K=2

description: 1000 NK landscapes with N=10 and K=2. Comma separated values. First line gives genotypes as binary strings; each subsequent line corresponds to one fitness landscape and gives the fitness values for each genotype. Mean fitness trajectories were calculated starting from the genotype with all sites equal to zero.
DOI: 10.5061/dryad.0hm4r/4
title: NK landscapes with N=10 and K=9

description: 1000 NK landscapes with N=10 and K=9. Comma separated values. First line gives genotypes as binary strings; each subsequent line corresponds to one fitness landscape and gives the fitness values for each genotype. Mean fitness trajectories were calculated starting from the genotype with all sites equal to zero.
DOI: 10.5061/dryad.1n0g6/10
title: Supplementary Data set 10

description: Predicted proteins from gene predictions on de novo assembled contigs.
DOI: 10.5061/dryad.1n0g6/11
title: Supplementary Data set 11

description: Normalized coverage depth in 499 bp genomic intervals.
DOI: 10.5061/dryad.1n0g6/8
title: Supplementary Data set 8

description: Candidate major effect mutation counts by functional category.  Each row lists numbers of genes affected by each listed class of mutation for each KEGG pathway, PFAM domain family, GO slim, and GO term.
DOI: 10.5061/dryad.1n0g6/9
title: Supplementary Data set 9

description: De novo assembled contigs from reads failing to map to the CC-503 reference assembly.