cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh2882962.08fu
title: SH2882962.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2882963.08fu
title: SH2882963.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.21227/2z7z-ze38
title: PLT Dataset

description: The portrait thangka image is a kind of religious scroll painting that expresses figures' identity and duties through portraits, sitting platforms, and backlighting.we elaborately collected a dataset of portrait-like thangkas, which consists of 4086 images covering four object categories.We provide rich annotation for this dataset.
DOI: 10.6084/m9.figshare.20423310
title: Medium-Mn steel .xlsx

description: Experimental results for friction stir welding
DOI: 10.5281/zenodo.6857114
title: Human-mouse syntenic Long Range Interactions in Neural Stem Cells

description: This repository contains the list of human DNA regions corresponding to long-range interactions in RNA polII-mediated long-range interactions in mouse. They are named human-mouse syntenic Long Range Interactions (hmsLRI) and were obtained via synteny from mouse neonatal forebrain stem cells. They were also annotated for their overlap with DNA sequence variants (SNPs; CNVs) associated with human neurodevelopmental disease (NDD). The lists of genes identified via inferred that are potentially involved in NDD, eye-development, and traits (schizophrenia, bipolar disorder, intelligence). This is a resource for exploring the potential of the non-coding regions of DNA, the largest part of the genome (~98%), in NDD. Indeed, despite the numerous NDD-causative genes identified, only 42% of patients with severe developmental disorders carry pathogenic <em>de novo</em> mutations within coding sequences. More than a half of patient could be diagnosed and treated with further research and technologies, one option is studying the non-coding genome and how alterations affect genes. Tracks for visualization onto UCSC Genome Browser and WashU, are also provided.<br> See README for more details. The peer-reviewed publication for this dataset has now been published in International Journal of Molecular Science, available OA at: https://www.mdpi.com/1422-0067/23/14/7964. Please cite this when using the dataset.
DOI: 10.5281/zenodo.6857113
title: Human-mouse syntenic Long Range Interactions in Neural Stem Cells

description: This repository contains the list of human DNA regions corresponding to long-range interactions in RNA polII-mediated long-range interactions in mouse. They are named human-mouse syntenic Long Range Interactions (hmsLRI) and were obtained via synteny from mouse neonatal forebrain stem cells. They were also annotated for their overlap with DNA sequence variants (SNPs; CNVs) associated with human neurodevelopmental disease (NDD). The lists of genes identified via inferred that are potentially involved in NDD, eye-development, and traits (schizophrenia, bipolar disorder, intelligence). This is a resource for exploring the potential of the non-coding regions of DNA, the largest part of the genome (~98%), in NDD. Indeed, despite the numerous NDD-causative genes identified, only 42% of patients with severe developmental disorders carry pathogenic <em>de novo</em> mutations within coding sequences. More than a half of patient could be diagnosed and treated with further research and technologies, one option is studying the non-coding genome and how alterations affect genes. Tracks for visualization onto UCSC Genome Browser and WashU, are also provided.<br> See README for more details. The peer-reviewed publication for this dataset has now been published in International Journal of Molecular Science, available OA at: https://www.mdpi.com/1422-0067/23/14/7964. Please cite this when using the dataset.
DOI: 10.6084/m9.figshare.16577954
title: CNVRs Identified in Afghan Arabian Sheep Breeds.csv

description: The CNVRs identified in Afghan sheep breeds: The aim of this study was to identify CNVs in 45 Afghan sheep consisting of three Arab, Baluchi, and Gedic breeds using genomic arrays containing 53862 single nucleotide polymorphism (SNP) markers. Data were analyzed using the Hidden Markov Model (HMM) of PennCNV software.
DOI: 10.6084/m9.figshare.16577954.v3
title: CNVRs Identified in Afghan Arabian Sheep Breeds.csv

description: The CNVRs identified in Afghan sheep breeds: The aim of this study was to identify CNVs in 45 Afghan sheep consisting of three Arab, Baluchi, and Gedic breeds using genomic arrays containing 53862 single nucleotide polymorphism (SNP) markers. Data were analyzed using the Hidden Markov Model (HMM) of PennCNV software.
DOI: 10.6084/m9.figshare.16577954.v2
title: CNVRs Identified in Afghan Arabian Sheep Breeds.csv

description: The CNVRs identified in Afghan sheep breeds: The aim of this study was to identify CNVs in 45 Afghan sheep consisting of three Arab, Baluchi, and Gedic breeds using genomic arrays containing 53862 single nucleotide polymorphism (SNP) markers. Data were analyzed using the Hidden Markov Model (HMM) of PennCNV software.
DOI: 10.26106/ypqk-7d51
title: The first online capillary electrophoresis-microscale thermophoresis (CE-MST) method for the analysis of dynamic equilibria – determination of acidity constant of fluorescein isothiocyanate - concept
DOI: 10.6084/m9.figshare.20423646
title: Strong asymmetry of interhemispheric ice volume during MIS11, MIS 9 and MIS 7 drives heterogeneity of interglacial precipitation intensity over Asia

description: It contains age models and grain size parameters.
DOI: 10.6084/m9.figshare.20423646.v1
title: Strong asymmetry of interhemispheric ice volume during MIS11, MIS 9 and MIS 7 drives heterogeneity of interglacial precipitation intensity over Asia

description: It contains age models and grain size parameters.
DOI: 10.34740/kaggle/dsv/4022953
title: Performance Data
DOI: 10.21227/jfbk-0j17
title: A Subject Data of ARKitFace Dataset

description: The ARKitFace dataset is established for training and evaluating both 3D face shape and 6DoF in the setting of perspective projection. A total of 500 volunteers, aged 9 to 60, are invited to record the dataset. They sit in a random environment, and the 3D acquisition equipment is fixed in front of them, with a distance ranging from about 0.3m to 0.9m. Each subject is asked to perform 33 specific expressions with two head movements (from looking left to looking right / from looking up to looking down). 3D acquisition equipment we used is an iPhone 11. The shape and location of human face are tracked by structured light sensor. The triangle mesh and 6DoF information of the RGB images are obtained by built-in ARKit toolbox. The triangle mesh is made up of 1,220 vertices and 2,304 triangles. In total, 902,724 2D facial images (resolution 1280 X 720 or 1440 X 1280) with ground-truth 3D mesh and 6DoF pose annotation are collected. All the 500 subjects consent to use their data. We will release all the subjects with 2D facial images, 3D mesh and 6DoF pose annotation under the authorization of all the subjects. We will not release their personal privacy information, including age, gender etc. We uploaded the data of a subject to IEEE DataPort as an example.
DOI: 10.5281/zenodo.6956063
title: Synthetic river flow videos dataset

description: ###### ######### ########## ###### ######### ##########<br> <strong> Synthetic river flow videos for evaluating image-based velocimetry methods</strong><br> ###### ######### ########## ###### ######### ##########<br> # Year : 2022<br> # Authors : G.Bodart (guillaume.bodart@inrae.fr), J.Le Coz (jerome.lecoz@inrae.fr), M.Jodeau (magali.jodeau@edf.fr), A.Hauet (alexandre.hauet@edf.fr) ###<br> <em>This file describes the data attached to the article</em> ### -&gt; 00_article_cases - This folder contains the data used in the case studies: synthetic videos + reference files. Please refer to the README file for more information about the data.<br> - 00_reference_velocities<br> -&gt; Reference velocities interpolated on a regular grid. Data are given in conventional units, i.e. m/s and m.<br> - 01_XX<br> -&gt; Data of the first case study.<br> - 02_XX<br> -&gt; Data of the second case study. ### -&gt; 01_dev - This folder contains the modified version of Mantaflow described in the article. Installation instructions can be found at http://mantaflow.com ### -&gt; 02_dataset - This folder contains synthetic videos generated with the method described in the article. The fluid simulation parameters, and thus the reference velocities, are the same as those presented in the article. <br> - The videos can be used freely. Please consider citing the corresponding paper.
DOI: 10.6084/m9.figshare.20364919
title: Additional file 2 of Nebulized budesonide combined with systemic corticosteroid vs systemic corticosteroid alone in acute severe asthma managed in the emergency department: a randomized controlled trial

description: Additional file 2.
DOI: 10.6084/m9.figshare.20364922
title: Additional file 3 of Nebulized budesonide combined with systemic corticosteroid vs systemic corticosteroid alone in acute severe asthma managed in the emergency department: a randomized controlled trial

description: Additional file 3.
DOI: 10.6084/m9.figshare.20364925
title: Additional file 4 of Nebulized budesonide combined with systemic corticosteroid vs systemic corticosteroid alone in acute severe asthma managed in the emergency department: a randomized controlled trial

description: Additional file 4.
DOI: 10.6084/m9.figshare.20364928
title: Additional file 5 of Nebulized budesonide combined with systemic corticosteroid vs systemic corticosteroid alone in acute severe asthma managed in the emergency department: a randomized controlled trial

description: Additional file 5.
DOI: 10.6084/m9.figshare.20364919.v1
title: Additional file 2 of Nebulized budesonide combined with systemic corticosteroid vs systemic corticosteroid alone in acute severe asthma managed in the emergency department: a randomized controlled trial

description: Additional file 2.
DOI: 10.6084/m9.figshare.20364922.v1
title: Additional file 3 of Nebulized budesonide combined with systemic corticosteroid vs systemic corticosteroid alone in acute severe asthma managed in the emergency department: a randomized controlled trial

description: Additional file 3.
DOI: 10.6084/m9.figshare.20364925.v1
title: Additional file 4 of Nebulized budesonide combined with systemic corticosteroid vs systemic corticosteroid alone in acute severe asthma managed in the emergency department: a randomized controlled trial

description: Additional file 4.
DOI: 10.6084/m9.figshare.20364928.v1
title: Additional file 5 of Nebulized budesonide combined with systemic corticosteroid vs systemic corticosteroid alone in acute severe asthma managed in the emergency department: a randomized controlled trial

description: Additional file 5.
DOI: 10.6084/m9.figshare.20423706
title: Supplementary Material for: Serum Uromodulin Levels Reflect Severity of Clinicopathological Findings in Early Stage IgA Nephropathy

description: <b><i>Introduction:</i></b> Uromodulin (UMOD), also known as Tamm-Horsfall protein, is a kidney-specific protein. Recently, low levels of urinary UMOD (uUMOD) have been reported as a risk factor for renal function decline in IgA nephropathy (IgAN). However, the clinical significance of serum UMOD (sUMOD) is not clear. In this study, we clarified the clinical significance of sUMOD in IgAN. <b><i>Methods:</i></b> One hundred eight biopsy-proven IgAN patients were included in this study. The relationships between sUMOD levels and various clinicopathological findings were evaluated. <b><i>Results:</i></b> sUMOD was positively correlated with estimated glomerular filtration rate (eGFR) (<i>p</i> &lt; 0.001, <i>r</i> = 0.5) and negatively correlated with creatinine (Cr) (<i>p</i> &lt; 0.0001, <i>r</i> = −0.51) and urinary protein (UP) (<i>p</i> = 0.005, <i>r</i> = −0.33). In the low sUMOD group (&lt;145 ng/mL), Cr was significantly higher (<i>p</i> &lt; 0.0001) and histopathological changes were severe. The cumulative incidence of a 30% decline in eGFR was 25.6% overall, 0% in histological grade (H-G) I, 33.3% in H-G II, 59.6% in H-G III, and 66.7% in H-G IV. In univariate analyses, prognostic factors for a 30% decline in eGFR were male, high UP, low albumin, low eGFR, and low sUMOD. When comparing the severe histopathological classes (H-G II–IV) and H-G I, low sUMOD was a risk factor for severe histopathological changes. Furthermore, in patients with eGFR &gt; 60 (<i>n</i> = 74), multivariate analyses revealed that low sUMOD independently predicted a 30% decline in eGFR and having severe histopathological changes. <b><i>Conclusion:</i></b> In IgAN, sUMOD levels were associated with renal function. Low sUMOD levels may be a risk factor for worsening renal function, especially in the early stage of IgAN.
DOI: 10.6084/m9.figshare.20423720
title: Additional file 12 of Identification of stage-related and severity-related biomarkers and exploration of immune landscape for Dengue by comprehensive analyses

description: Additional file 12. Table S6. Differentially expressed fold of genes in individual serotype for three comparison groups. (C, Convalescent stage; EA, Early Acute stage; LA, Late Acute stage).
DOI: 10.6084/m9.figshare.20423720.v1
title: Additional file 12 of Identification of stage-related and severity-related biomarkers and exploration of immune landscape for Dengue by comprehensive analyses

description: Additional file 12. Table S6. Differentially expressed fold of genes in individual serotype for three comparison groups. (C, Convalescent stage; EA, Early Acute stage; LA, Late Acute stage).
DOI: 10.5281/zenodo.6956036
title: TALON output for WTC11 cell lines

description: A range of long-read RNA-seq protocols is analyzed with TALON from WTC11 for the LRGASP challenge. We deposit our results here for further analysis.
DOI: 10.5281/zenodo.6640540
title: TALON output for WTC11 cell lines

description: A range of long-read RNA-seq protocols is analyzed with TALON from WTC11 for the LRGASP challenge. We deposit our results here for further analysis.
DOI: 10.6084/m9.figshare.20423801
title: Additional file 3 of Clinical genetics evaluation and testing of connective tissue disorders: a cross-sectional study

description: Additional file 3: Table S3. Genotypic and Phenotypic Profiles of 100 Patients Presenting for Suspicion of Heritable Connective Tissue Disorders.
DOI: 10.6084/m9.figshare.20423801.v1
title: Additional file 3 of Clinical genetics evaluation and testing of connective tissue disorders: a cross-sectional study

description: Additional file 3: Table S3. Genotypic and Phenotypic Profiles of 100 Patients Presenting for Suspicion of Heritable Connective Tissue Disorders.
DOI: 10.6084/m9.figshare.20423812
title: Additional file 2 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 2: Dataset S1. Genes responsible for EPS biosynthesis or involved in biofilm formation according to Model Seed categories used for targeted investigation through Hidden Markov Models. List of KEGG code, reaction and name of genes searched, combined with the number of copies found in each genome. “*” refers to results retrieved by EggNOG annotation alone, “^” refer to results obtained through HMM search and no annotation refers to results retrieved by RAST.
DOI: 10.6084/m9.figshare.20423812.v1
title: Additional file 2 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 2: Dataset S1. Genes responsible for EPS biosynthesis or involved in biofilm formation according to Model Seed categories used for targeted investigation through Hidden Markov Models. List of KEGG code, reaction and name of genes searched, combined with the number of copies found in each genome. “*” refers to results retrieved by EggNOG annotation alone, “^” refer to results obtained through HMM search and no annotation refers to results retrieved by RAST.
DOI: 10.6084/m9.figshare.20423815
title: Additional file 3 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 3: Dataset S2. Metagenomes clusters used to summarize the abundance profile of MAGs and experiment related unique identifiers of raw reads. The corresponding reference is associated with each experiment used for coverage profile calculation.
DOI: 10.6084/m9.figshare.20423815.v1
title: Additional file 3 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 3: Dataset S2. Metagenomes clusters used to summarize the abundance profile of MAGs and experiment related unique identifiers of raw reads. The corresponding reference is associated with each experiment used for coverage profile calculation.
DOI: 10.6084/m9.figshare.20423818
title: Additional file 4 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 4: Dataset S3. KEGG modules completeness level of MAGs. Integrated results of EggNOG and Diamond annotations.
DOI: 10.6084/m9.figshare.20423818.v1
title: Additional file 4 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 4: Dataset S3. KEGG modules completeness level of MAGs. Integrated results of EggNOG and Diamond annotations.
DOI: 10.6084/m9.figshare.20423821
title: Additional file 5 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 5: Dataset S4. Genome scale metabolic models reconstructed for the five most abundant species and their quality assessment. Models are available in SBML format, and the reports generated with MEMOTE in HTML format at 10.6084/m9.figshare.16692028.
DOI: 10.6084/m9.figshare.20423821.v1
title: Additional file 5 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 5: Dataset S4. Genome scale metabolic models reconstructed for the five most abundant species and their quality assessment. Models are available in SBML format, and the reports generated with MEMOTE in HTML format at 10.6084/m9.figshare.16692028.
DOI: 10.6084/m9.figshare.20423824.v1
title: Additional file 6 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 6: Dataset S5. Basic Anaerobic Medium composition used for the community model simulation. “Compounds” are the unique ModelSEED identifier, “Name” the corresponding human readable metabolites and “MaxFlux” the uptake upper bound allowed form the feedstock.
DOI: 10.6084/m9.figshare.20423827
title: Additional file 7 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 7: Dataset S6. MAG statistics and phylogenetic classification. General information regarding the recovered 59 MAGs.
DOI: 10.6084/m9.figshare.20423827.v1
title: Additional file 7 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 7: Dataset S6. MAG statistics and phylogenetic classification. General information regarding the recovered 59 MAGs.
DOI: 10.6084/m9.figshare.20423824
title: Additional file 6 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 6: Dataset S5. Basic Anaerobic Medium composition used for the community model simulation. “Compounds” are the unique ModelSEED identifier, “Name” the corresponding human readable metabolites and “MaxFlux” the uptake upper bound allowed form the feedstock.
DOI: 10.6084/m9.figshare.20423830
title: Additional file 8 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 8: Dataset S7. Operons predicted by Operon Mapper in MAGs. Results are available at 10.6084/m9.figshare.16691878.
DOI: 10.6084/m9.figshare.20423830.v1
title: Additional file 8 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 8: Dataset S7. Operons predicted by Operon Mapper in MAGs. Results are available at 10.6084/m9.figshare.16691878.
DOI: 10.6084/m9.figshare.20423833.v1
title: Additional file 9 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 9: Dataset S8. Illumina filtered reads and raw nanopore reads quality assessment. Results obtained with FastQC (v.0.11.9) and NanoPlot (v.1.32.1) are available at 10.6084/m9.figshare.19355303.
DOI: 10.6084/m9.figshare.20423833
title: Additional file 9 of Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation

description: Additional file 9: Dataset S8. Illumina filtered reads and raw nanopore reads quality assessment. Results obtained with FastQC (v.0.11.9) and NanoPlot (v.1.32.1) are available at 10.6084/m9.figshare.19355303.
DOI: 10.6084/m9.figshare.20423810
title: Additional file 1 of The effects of magnesium supplementation on abnormal uterine bleeding, alopecia, quality of life, and acne in women with polycystic ovary syndrome: a randomized clinical trial

description: Additional file 1.
DOI: 10.6084/m9.figshare.20423810.v1
title: Additional file 1 of The effects of magnesium supplementation on abnormal uterine bleeding, alopecia, quality of life, and acne in women with polycystic ovary syndrome: a randomized clinical trial

description: Additional file 1.
DOI: 10.6084/m9.figshare.20423854
title: Additional file 5 of A triangulated perspective for understanding CAM use in Lebanon: a qualitative study

description: Additional file 5.