cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yf7xs2
title: Occurrence Download

description: A dataset containing 2960 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brassica oleracea var. botrytis L."
 ]
}

 The dataset includes 2960 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004590-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8sexkv
title: Occurrence Download

description: A dataset listing the 312 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-6.03411 36.08498,-5.6932 36.2595,-6.35474 37.08743,-6.6226 36.9048,-6.03411 36.08498))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Poaceae"
 ]
}

 The dataset's 312 records were derived from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004582-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qa2p6g
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canarium parvum Leenh."
 ]
}

 The dataset includes 67 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004591-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15458218
title: sbes2025-jigsaw_exp_report_data

description: This repository provides the artifacts related to data collection and analysis as described in the paper: Teaching software design patterns: An experience using the Jigsaw classroom
DOI: 10.5281/zenodo.15458219
title: sbes2025-jigsaw_exp_report_data

description: This repository provides the artifacts related to data collection and analysis as described in the paper: Teaching software design patterns: An experience using the Jigsaw classroom
DOI: 10.15468/dl.7bxbau
title: Occurrence Download

description: A dataset containing 59609 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jacaranda Juss."
 ]
}

 The dataset includes 59609 records from 839 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004588-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.agfa4w
title: Occurrence Download

description: A dataset containing 4370 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Picea A.Dietr."
 ]
}

 The dataset includes 4370 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006198-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mez6z
title: Occurrence Download

description: A dataset containing 1624437 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Year is 2007",
 "Month is September"
 ]
}

 The dataset includes 1624437 records from 483 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002568-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ay6-ll6-zbx
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bjb-gcc-3sm
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/03b-m0p-8ep
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ljj-vvq-gby
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rb8-7k0-tj0
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t55-e9k-hp7
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fce-xv5-jms
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2mt-che-flc
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/41g-gda-42n
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/55b-303-xk2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/907-lej-v2x
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16905465
title: Remote sensing of phenological patterns across vegetation types in Mediterranean Chile

description: Data outputs of the publication "Remote sensing of phenological patterns across vegetation types in Mediterranean Chile"
DOI: 10.5281/zenodo.16905466
title: Remote sensing of phenological patterns across vegetation types in Mediterranean Chile

description: Data outputs of the publication "Remote sensing of phenological patterns across vegetation types in Mediterranean Chile"
DOI: 10.3535/cy2-mm4-yqm
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nrl-kfa-jhv
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/js0-yba-yeq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wsa-7yb-09l
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7j4-m1d-ja8
title: Myomimus Ognev, 1924

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mq9-mdr-qnf
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7xa-6a9-twb
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jrh-v97-4tt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fpw-21n-y0x
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/55q-2qr-vh8
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kkf-47d-e7g
title: Corynexochus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0sp-ce1-met
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ql4-013-aex
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q2c-136-h3s
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z3z-xec-f39
title: †Discocyclina dispansa (Sowerby, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/87d-0gz-5mq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dz5-p5f-k61
title: †Nodicoeloceras fontis Guex, 1972

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ptx-ae4-jrn
title: †Gervillia Defrance, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vsv-zwd-0pg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/prx-ey8-j38
title: Bos taurus primigenius Bojanus, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9dn-vl1-597
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yjy-hkj-adv
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2vx-vpp-bsz
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/er0-g7t-6fj
title: Ammonites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3zv-zq8-2j7
title: Canis lupus familiaris Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p5z-plh-l00
title: †Blastammina Eisenack, 1932

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gvv-f3e-aar
title: Homo sapiens Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mks-hm3-tzs
title: Fungella von Hagenow, 1851

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4fp-9lj-b4v
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lvl-pjd-p4x
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.9vadf2
title: Occurrence Download

description: A dataset containing 31498 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Dendrocygna bicolor (Vieillot, 1816)",
 "Year is less than or equal to 2024",
 "Year is greater than or equal to 2021",
 "Continent is North America"
 ]
}

 The dataset includes 31498 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013000-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48324/dandi.001344/0.250521.2349
title: Cortical Circuits for the integration of short-latency auditory pathways: Auditory Cortex retrograde tracing

description: Retrograde tracing from specific auditory cortical areas and layers in mice, corresponding to the data reported in manuscript PMID: 39829930.
DOI: 10.14288/1.0396720
title: Modelling the Potential Impacts of Climate Change on Arboreal Diversity of the University of British Columbia Vancouver Campus from 2050 to 2080

description: Climate change poses a considerable risk to forest diversity in urban communities. The University of British Columbia (UBC) seeks to identify vulnerable tree species on campus and apply strategies for sustaining arboreal diversity in future decades. In contribution to these efforts, this study investigated the potential shift in tree composition on the UBC Vancouver Campus over the next century by (1) predicting suitable climatic habitat for 128 campus species in 2050 and 2080, and (2) mapping the expected change in species richness across North America. Species observation data from the Global Biodiversity Information Facility (GBIF) and climate predictors from ClimateNA were used to perform MaxEnt species distribution modelling. The climatic baseline (1961-1990) range for each tree species was defined using average annual temperature and precipitation, and projected using RCP 8.5 climate scenarios for 2050 (2041-2070) and 2080 (2071-2100). This dataset contains all geoprocessing scripts, species range and diversity maps for the baseline year, 2050 and 2080, as well as model outputs for each tree species.
DOI: 10.14288/1.0396721
title: How does vegetation fragmentation affect urban carbon stock in City of Vancouver, Canada

description: Urban vegetation acts as an extremely important carbon stock to store carbon. Although many studies have investigated the relationship between urban vegetation and carbon stocks, few of them closely examine the phenomenon of vegetation fragmentation in urban areas and how it affects the carbon stock. Therefore, this project investigates how vegetation fragmentation affects carbon stocks in the City of Vancouver using GIS analytic tools. To do so, ArcGIS Pro was used to modify and analyze remotely sensed data of Vancouver. Land cover data were reclassified and clipped within the Vancouver dissemination area (DA) boundary to generate a new raster contain only the vegetation data of Vancouver. This raster was then inputted into FRAGSTATS to calculate aggregation metrics that quantify the fragmentation. After that, the aggregation metrics were joined with the carbon data and put back to the Vancouver dissemination area boundary. Geographically weighted regression was then used to compute a statistical model to analyze the relationship between carbon and fragmentation of each DA. The statistical model shows a strong positive relationship between carbon and fragmentation and has an overall adjusted R squared value of 0.77, suggesting a strong relationship. The results suggest that higher fragmentation is associated with lower carbon density and thus smaller carbon stock. Therefore, it is strongly recommended that city planning takes the spatial distribution and composition of urban vegetation into consideration. Furthermore, the study also found that some smaller vegetation patches have very high carbon density even though their area is small. Therefore, mid to large-scale parks and other infrastructure that provide decent areas of closely aggregated trees may be promoted as their contribution to the urban carbon stock are effective and significant.
DOI: 10.14288/1.0396723
title: How are vulnerable populations exposed to restorative nature in the City of Vancouver, Canada?

description: Living in cities can be stressful. While studies have shown that exposure to nature can help reduce stress and promote mental wellbeing, some research has shown that some characteristics of nature provide more psychological support than others depending on one’s state of wellbeing. City planning and urban forestry strategy need to consider the qualitative attributes of urban nature in the landscape in order to better support the different needs of the residents. This study focused on restorative nature: nature elements that help relieve stress and alleviate mental fatigue. A novel measurement, Local Restorative Nature (LRN) index was developed to allow for a quantitative comparison of restorative nature across a landscape using data from remote sensing imagery and municipality’s geographical information system (GIS). Using the City of Vancouver as a case study, we assessed the distribution of restorative nature and investigated how various populations in the city, particularly vulnerable groups, are exposed to restorative nature. A geographically weighed regression analysis was performed using the computed LRN index and the Canadian Index of Multiple Deprivation data to examine localized relationships between vulnerability groups and their exposure to restorative nature, with a resulted r-squared value of 0.71. Our study found that vulnerable groups in the City of Vancouver have different exposure to restorative nature. This exposure to restorative nature can be different for populations with similar vulnerability depending on their local area of residence. The proposed LRN index demonstrated an easy and effective way to quantify urban restorative nature. When combining the LRN index with demographic data, city planners and policymakers could identify and prioritize future planning efforts in neighborhoods that are more in need to promote equity in nature-based care services across the city and improve residents’ wellbeing.
DOI: 10.14288/1.0396750
title: Using Repeat-Pass Light Detection and Ranging (LiDAR) Data to Compare Wildfire Induced Geomorphic Change Across Different Burn Severities in the Cariboo Region, British Columbia

description: Wildfires remove vegetation and alter soil conditions resulting in increased susceptibility of ground surfaces to erosion, especially over periods of heavy precipitation. Geomorphic changes that are influenced by wildfire occurrence can evolve into hazardous natural events like landslides and flows that pose the risk of human fatality and costly infrastructural damage. We compare light detection and ranging (LiDAR) data time series to identify and compare landscape geomorphic change in burned and unburned areas in the William’s Lake area of the Cariboo Region of British Columbia following the 2017 wildfires. To identify pre and post-fire changes we interpolate the LiDAR data into digital elevation models (DEMs) and generate DEMs of difference. We stratify the changes by areal size, slope class, and burn severity. With this information, we compare event occurrence between burn severity using a negative binomial regression followed by an ad-hoc pairwise comparison test. The results did not support our hypothesis that higher burn severities would have significantly greater evidence of geomorphic change occurrence across event size and slope class. The majority of the significant pairs were between the unburned and burned classes with 17 significant relationships, while there was only one significant relationship between the burn classes (low, medium, and high). On the steepest slopes (35° &gt;), there were no significant relationships across the size classes, possibly due to a lack of initial vegetation. By characterizing the differences in geomorphic event occurrence between burn severities we can better understand the impact that wildfires can have on geomorphic change. This could lead to improvements in post-wildfire hazard and risk assessments and may induce amendments to the current assessment methodology in British Columbia.
DOI: 10.14288/1.0396665
title: Experiment level curation identifies high confidence transcriptional regulatory interactions in neurodevelopment

description: &lt;p&gt;The capacity to computationally reconstruct gene regulatory networks using large-scale biological data is currently limited by the absence of a high confidence set of one-to-one regulatory interactions. Given the lengthy history of using small scale experimental assays to investigate individual interactions, we hypothesize that a reliable collection of gene regulatory interactions could be compiled by systematically inspecting the published literature. To this end, we developed a curation protocol to examine and record evidence of regulatory interactions at the individual experiment level. Focusing on the area of brain development, we applied our pipeline to 1,310 publications. We identified 3,601 individual experiments, providing detailed information about 1,499 regulatory interactions. Many of these interactions have verified activity specifically in the embryonic brain. By capturing reports of regulatory interactions at this level of granularity, we present a resource that is more interpretable than other similar resources.&lt;/p&gt; &lt;p&gt;List of Tables in TSV format:&lt;/p&gt; &lt;ul&gt; &lt;li&gt;Supplementary Table S1. List of candidate papers&lt;/li&gt; &lt;li&gt;Supplementary Table S2. List of TFs&lt;/li&gt; &lt;li&gt;Supplementary Table S3. Curated records at the experiment level&lt;/li&gt; &lt;li&gt;Supplementary Table S4. Curated records summarized at the DTRI level&lt;/li&gt; &lt;li&gt;Supplementary Table S5. TF Perturbation experiment details&lt;/li&gt; &lt;li&gt;Supplementary Table S6. TF-DNA Binding experiment details&lt;/li&gt; &lt;li&gt;Supplementary Table S7. TF-reporter experiment details&lt;/li&gt; &lt;li&gt;Supplementary Table S8. All DTRI records including those curated in external databases&lt;/li&gt; &lt;li&gt;Supplementary Table S9. Records obtained from external databases&lt;/li&gt; &lt;li&gt;Supplementary Table S10. List of differentially expressed genes following Pax6 perturbation&lt;/li&gt; &lt;li&gt;Supplementary Table S11. Experiments with negative results&lt;/li&gt; &lt;/ul&gt;
DOI: 10.14288/1.0406665
title: Replication Data for: Superiority of Non-opioid Postoperative Pain Management After Thyroid and Parathyroid Operations: A Systematic Review and Meta-analysis

description: The aim of this meta-analysis was to evaluate the body of evidence investigating the post-operative use of non-opioid analgesic drugs and techniques for parathyroid and thyroid surgeries. Non-opioid analgesia was found to be superior to the control group for pain control with no significant difference in complications.
DOI: 10.14288/1.0396725
title: Mapping Mangrove Forest Land Cover Change in Kampong Som Bay, Cambodia from 2015 to 2020

description: Mangrove forests are productive and biologically complex ecosystems that provide a wide range of environmental services and supply people with numerous goods. Growing in a variety of depths of salty water, mangrove forests play a significant role in supporting the coastal communities along Cambodia’s 440 kilometer-long coastline. However, mangrove forests in Cambodia have experienced great losses due to the impacts of intensive human activities. Although the human-driven mangrove losses in Cambodia have declined, the recent coverage change of mangrove forests needs to be evaluated for implementing effective regional ecological restoration programs. This study assessed the land cover change and fragmentation level of mangrove forests in Kampong Som Bay, Cambodia from 2015 to 2020. Using a combination of unsupervised and supervised classifications on Landsat 8 OLI/TIRS Level-2 satellite imageries, this study identified that 19,929 ha of mangrove forests remained unchanged, while 2,799 ha of mangrove forests were converted to other land cover types. The key driver of mangrove loss was the expansion of soil class, which could be explained by multiple human activities like rice agriculture and urban development. Based on the computation results of four landscape metrics, the mean patch size of mangrove increased but the shape of mangrove patches became more complex over time. To implement policies that conserve mangrove forests in Kampong Som Bay, it is essential to consider the deforestation occurring on the edge of mangrove patches.