cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10072412.v2
title: Australian gay and lesbian postcodes (IJGIS)

description: This project uses data on same-gendered households (via the 2016 Australian Census) and cohabitation rates (via behavioural population surveys) to estimate the total number and prevalence of gay men and lesbian women living across Australia and in each postcode. The data and code for generating relevant outputs and analyses are contained here.<br><b>(i) Stock datasets</b> [Files: remoteness2012.dta; postcode_clusters.dta] This item contains files required to organize the Australian Census data: (i) the 'remoteness' classifications per the Australian Statistical Geography Standard (Australian Bureau of Statistics, 2011), and (ii) clustering of those postcodes with base total populations of less than 200 people. The clustering process was undertaken manually by reviewing postcodes in that bracket and combining them with neighboring postcodes within the same jurisdictions and remoteness classification until the threshold of 200 was met. Preference was given for clustering postcodes that shared the largest geographic border and/or with the smallest population sizes.<br><br><b>(ii) Underlying datasets </b>[Files: pop_sex_0-9.xlsx; pop_sex_10-19.xlsx; pop_sex_18.xlsx; pop_sex_19.xlsx; pop_sex_20-24.xlsx; pop_sex_25-29.xlsx; pop_sex_all.xlsx; ss_couples_all.xlsx]This item contains tables created by and extracted from the Australian Bureau of Statistics 'TableBuilder' platform, which allows access to and organization of aggregate data from the 2016 Australian Census. The tables exist in two groups (i) total number of Census participants, stratified by postcode, age group and gender, and (ii) total number of same-gendered households, stratified by postcode and gender.<br><br><b>(iii) Organizational code</b> [File: generate dataset and analysis.do]This file contains the code (Stata, version 15.0) to organize the 'underlying datasets' and combine them with information collated from behavioral survey data. To account for remoteness classification via the Australian Statistical Geography Standard, it merges by postcode on a separate 'stock dataset' (remoteness2012). To account for clustering of postcodes with small overall populations, it merges by postcode on a separate 'stock dataset' (postcode_clusters). The code additionally produces outcomes of descriptive analyses and relevant tables, and generates a final dataset of, by-postcode, population sizes and prevalences.<br><b>(iv) Final dataset </b>[File: Appendix B - dataset.xlsx]This final dataset contains organized, merged and interpreted outcomes, presented as variables of, by-postcode, the estimated absolute number and prevalence of gay men and lesbian women in Australia. A data dictionary is included.<br><br>
DOI: 10.6084/m9.figshare.5896708.v2
title: Transcripts of interviews with 4 participants regarding Vicarious Liability in the SMME workplace

description: This is a collection of transcripts of interviews with four voluntary participants for the dissertation submitted in partial fulfillment of an MPhil specialising in Digital Curation at the University of Cape Town.<br>Title of the dissertation:Measuring the Effect of Vicarious Liability under POPI Implementation within SMMEs
DOI: 10.6084/m9.figshare.7929041.v1
title: gVCF_HG02307

description: 1000 Genomes gVCF mapped to hs37d5 for HG02307. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.28060874.v1
title: <b>Regional Differences in Amplitude and Spatial Homogeneity of Muscle Activity in the Biceps Femoris Long Head</b>

description: Muscle activity data was collected via two 32-electrode HDsEMG matrices (OTBioelettronica, GR10MM0804) from the proximal and distal Biceps femoris long head. The uploaded data contains processed data of individual subject's normalized amplitude and modified entropy (spatial homogeneity) of muscle activity for the proximal and distal Biceps femoris long head.
DOI: 10.6084/m9.figshare.17040476.v1
title: Supplementary Material for: TATI, TAT-2, and CRP as Prognostic Factors in Colorectal Cancer

description: <b><i>Objectives:</i></b> Colorectal cancer is the third most common cancer worldwide, with an obvious need for more accurate prognostics. Previous studies identified C-reactive protein (CRP) as a prognostic serum biomarker for colorectal cancer, whereas the biomarkers tumor-associated trypsin inhibitor (TATI) and tumor-associated trypsin-2 (TAT-2) are less well-known prognostic factors. Therefore, in this study, we aimed to compare the prognostic role of these biomarkers. <b><i>Materials and Methods:</i></b> Our cohort consisted of 219 women and 274 men who underwent colorectal cancer surgery at Helsinki University Central Hospital from 1998 through 2005. Serum and plasma samples were collected before surgery, aliquoted, stored at −80°C, and then analyzed using high-sensitivity methods with commercially available time-resolved immunofluorometric assay kits. <b><i>Results:</i></b> In univariate analysis, CRP (HR 1.67; 95% confidence interval [CI]: 1.25–2.23; <i>p</i> = 0.001), TATI (HR 1.87; 95% CI: 1.13–3.08; <i>p</i> = 0.014), and TAT-2 (HR 1.52; 95% CI: 1.13–2.06; <i>p</i> = 0.006) were significant prognostic biomarkers across the entire cohort. In subgroup analyses, TATI and TAT-2 represented significant negative prognostic factors among patients older than 66, while patients with left-sided disease, a high serum TAT-2, or a high plasma CRP experienced worse prognosis. None of the biomarkers emerged as important in the disease stage subgroup analysis nor did they serve as independent factors in the multivariate analysis. <b><i>Conclusions:</i></b> TATI and TAT-2 as well as CRP significantly, but not independently, served as prognostic factors in our cohort of colorectal cancer patients. Further research is needed to fully understand their clinical role in colorectal cancer.
DOI: 10.6084/m9.figshare.5746077.v2
title: Table S4

description: The target miRNAs captured by multiple circRNAs (Top 20)
DOI: 10.6084/m9.figshare.22775396.v4
title: <strong>INSTRUMENTOS PARA ANÁLISE DA CONDIÇÃO DE TRABALHO NA ATENÇÃO PRIMÁRIA À SAÚDE: REVISÃO INTEGRATIVA</strong>

description: <strong>Questão/problema de pesquisa*</strong> <strong>Objetivos da pesquisa</strong> Quais são os instrumentos utilizados para analisar as condições de trabalho dos profissionais de saúde da atenção primária à saúde? Identificar as evidências científicas disponíveis sobre os instrumentos utilizados para análise das condições de trabalho de profissionais inseridos na atenção primária à saúde.
DOI: 10.6084/m9.figshare.28254662.v1
title: Supplementary Material for: Endomyocardial Biopsy: short- and long-term safety in myocarditis patients

description: Introduction: To assess the short-term and long-term outcomes of percutaneous endomyocardial biopsy (EMB) in patients with myocarditis and to identify the risk factors for EMB-related complications in this patient population.
Methods: A retrospective analysis was conducted on 294 hospitalized patients with clinically suspected myocarditis at Tongji Hospital from October 2019 to October 2023, with a median follow-up duration of 18 months. Patients were divided into an EMB group (n = 151) and a non-EMB group (n = 143) based on whether they underwent EMB procedure. The incidence of endpoints was compared between the two groups, and the Kaplan-Meier survival curve was used to assess the survival rate without endpoints. Endpoints included major adverse cardiovascular events (MACE), ventricular enlargement, and decline in cardiac function. Multivariate logistic regression analysis was employed to evaluate the risk factors for EMB-related complications.
Results: The incidence of major short-term complications following EMB was 2.0% (3/151), while the incidence of minor complications was 9.3% (14/151). Multivariate risk regression analysis revealed that operative duration (OR: 1.101, 95% CI: 1.02-1.079, p &lt; 0.05) and BNP levels (OR: 1.083, 95% CI: 0.931-1.26, p &lt; 0.05) were associated with short-term complications following EMB. Compared to the non-EMB group, the EMB group had no significant increase in hospital stay (10 [8, 15] vs. 9 [7, 16], p = 0.27) and no significant decline in cardiac function. Long-term follow-up results showed that 8 patients (5.3%) in the EMB group experienced MACE, 14 patients (9.3%) had left ventricular enlargement, and 18 patients (11.9%) had a decline in left ventricular ejection fraction (LVEF) after discharge; in the non-EMB group, 12 patients (8.4%) experienced MACE, 30 patients (19.9%) had left ventricular enlargement, and 18 patients (11.9%) had a decline in LVEF after discharge. The Kaplan-Meier curve revealed a lower incidence of endpoint events in the EMB group (p &lt; 0.05). 
Conclusions: In patients with myocarditis, EMB is associated with a risk of short-term complications, with higher levels of BNP and operative duration being independent risk factors for EMB-related complications. However, EMB does not adversely affect cardiac function or hospital stay during the inpatient period and may contribute to the improvement of long-term outcomes in patients with myocarditis.
DOI: 10.6084/m9.figshare.16798196.v2
title: A complete proteomic profile of human and bovine milk exosomes by liquid chromatography mass spectrometry

description: The present study investigates the proteomic content of milk-derived exosomes. A detailed description of the content of milk exosomes is essential to improve our understanding of the various components of milk and their role in nutrition. The exosomes used in this study were isolated as previously described and characterized by their morphology, particle concentration, and the presence of exosomal markers. Human and bovine milk exosomes were evaluated using Information-Dependent Acquisition (IDA) Mass Spectrometry. A direct comparison is made between their proteomic profiles. IDA analyses revealed similarities and differences in protein content. About 229 and 239 proteins were identified in the human and bovine milk exosome proteome, respectively, of which 176 and 186 were unique to each species. Fifty-three proteins were common in both groups. These included proteins associated with specific biological processes and molecular functions. Most notably, the 4 abundant milk proteins lactadherin, butyrophilin, perilipin-2, and xanthine dehydrogenase/oxidase were present in the top 20 list for both human and bovine milk exosomes. The milk exosome protein profiles we have provided are crucial new information for the field of infant nutrition. They provide new insight into the components of milk from both humans and bovines.
DOI: 10.6084/m9.figshare.21887559.v1
title: CellChat objects of embryonic E13 and E14 data

description: CellChat objects of embryonic E13 and E14 data
DOI: 10.6084/m9.figshare.24720729.v2
title: Spatiotemporal mobility network of global scientists, 1970-2020

description: It includes data and codes that support the findings of the study (Spatiotemporal mobility network of global scientists, 1970-2020).
DOI: 10.4121/14717058.v1
title: Data underlying the publication: Behind the big box - understanding the planning-development dialectic of large distribution centres in Europe'.

description: # XXL distribution centres: cases of Venlo Trade Port Noord and Roosendaal Borchwerf<br><br>## Licence<br>Creative Commons: CC BY-SA 4.0 (attribution + share alike)<br>Merten Nefs<br>DOI:10.4121/14717058<br><br>This dataset provides the underlying documents analyzed in the paper 'Behind the big box - understanding the planning-development dialectic of large distribution centres in Europe'.<br>https://doi.org/10.1080/09654313.2022.2057792<br>Main author: Merten Nefs<br>The paper is part of the PhD project Landscapes of Trade, more information on www.landscapesoftrade.nl<br><br>Data include one dossier of planning, legal and other documents per city. Additionally, the set provides survey data and method, performed among 22 interviewed stakeholders and experts.<br>
DOI: 10.6084/m9.figshare.5558887.v1
title: Supplementary Material for: Efferent Axonal Projections of the Habenular Complex in the Fire-Bellied Toad Bombina orientalis

description: The habenular complex and its associated axonal pathways are often thought of as phylogenetically conserved features of the brain among vertebrates despite the fact that detailed studies of this brain region are limited to a few species. Here, the gross morphology and axonal projection pattern of the habenular complex of an anuran amphibian, the fire-bellied toad <i>Bombina orientalis</i>, was studied to allow comparison with the situation in other vertebrates. Axonal pathways were traced using biocytin applications in dissected brain preparations. The results show that the rostral part of the left dorsal nucleus is enlarged in this species, while the rostral ventral nucleus and caudal parts do not show left-right size differences. Biocytin applications revealed widespread axonal projections of the habenular complex to the posterior tuberculum/dorsal hypothalamic region, ventral tegmentum, interpeduncular nucleus (IPN), and raphe median. Additionally, axons targeting the lateral hypothalamus originated from the ventral habenular nuclei. The results also suggest an asymmetrical pattern of projection to the IPN in the rostral part of the habenular complex, where the left habenula preferentially targeted the dorsal IPN while the right habenula preferentially targeted the ventral IPN. The caudal habenular nuclei showed no asymmetry of projections as both sides targeted the ventral IPN. Comparison of the habenular complex axonal connectivity across vertebrates argues against strong phylogenetic conservation of the axonal projection patterns of different habenular nuclei.
DOI: 10.6084/m9.figshare.12278627.v1
title: Dublin Core 1.1 KB

description: This dataset contains the KB file of Dublin Core 1.1
DOI: 10.6084/m9.figshare.28522457.v1
title: <b>A comprehensive grain-size database of surface sediments from the Taklamakan Desert</b>

description: The database consists of three Excel files: files 1, 2, and 3 describe the grain-size characteristics of sediments from the Taklamakan Desert, with the second and third files derived from calculations based on the data in file 1.<b>File 1:</b> Grain Size Database of Sediments from the Taklamakan DesertSpecifically, File 1 contains the following data fields: 1) geomorphic type, including mobile dunes, vegetated hummock dunes, fixed or semi-fixed sandy land, interdune, deflation areas, fluvial-lacustrine sediments, and mountain sediments; 2) latitude and longitude; 3) sample ID; 4) natural frequency of sediments (The volumetric percentage content (%) for each interval within the 0 to 3500 μm range). This file provides fundamental data on the sediment composition across different landscapes, serving as the basis for the subsequent derivation of statistical grain size parameters and particle fractions in Files 2 and 3.<b>File 2:</b> Grain Size Parameters Database of Sediments from the Taklamakan DesertThe parameters are calculated based on the data in File 1 and are expressed in two formats: micrometers (μm) and phi (ϕ) units. File 2 contains the following data fields: 1) geomorphic type; 2) grain size parameters, the mean grain size, sorting, skewness, and kurtosis were included; 3) sample ID. These indicators can measure the energy of the sediment transport medium and transport mode.<b>File 3:</b> Particle Fraction Database of Sediments from the Taklamakan DesertThis file provides the content of each sediment sample in terms of its constituent particle fractions. These fractions are calculated based on the grain size components from File 1 and are expressed as volume percentages. File 3 contains the following data fields: 1) geomorphic type; 2) particle fraction; 3) sample ID. This file summarizes the compositional characteristics of the sediments, offering insights into the relative abundance of different particle fractions across various geomorphic units of the Taklamakan Desert.<br><br>
DOI: 10.6084/m9.figshare.7831853.v1
title: Analysis of Chinese Tourists in Japan by Text Mining of a Hotel Portal Site

description: With an increasingly large number of Chinese tourists in Japan, the hotel industry is in need of an affordable market research tool that does not rely on expensive and time consuming surveys or inter- views. Because this problem is real and relevant to the hotel industry in Japan, and otherwise completely unexplored in other studies, we have extracted a list of potential keywords from Chinese reviews of Japanese hotels in the hotel portal site Ctrip using a mathematical model to then use them in a sentiment analysis with a machine learning classifier. While most studies that use information collected from the internet use pre-existing data analysis tools, in our study we designed the mathematical model to have the highest possible performing results in classification, while also exploring on the potential business implications these may have.
DOI: 10.6084/m9.figshare.5123467.v1
title: Supplementary Material for: Altered in vitro Proliferation of Mouse SOD1-G93A Skeletal Muscle Satellite Cells

description: <b><i>Background:</i></b> Amyotrophic lateral sclerosis (ALS) is the most common adult-onset neurodegenerative disease characterized by ascending muscle weakness, atrophy and paralysis. Early muscle abnormalities that precede motor neuron loss in ALS may destabilize neuromuscular junctions, and we have previously demonstrated alterations in myogenic regulatory factor (MRF) expression in vivo and in the activation of myofiber-associated skeletal muscle satellite cells (SMSCs) in the mouse model of ALS (SOD1-G93A). <b><i>Methods:</i></b> To elucidate niche dependence versus cell-autonomous mutant SOD1 (mSOD1) toxicity in this model, we measured in vitro proliferation potential and MRF and cyclin gene expression in SMSC cultures derived from fast-twitch extensor digitorum longus and slow-twitch soleus muscles of SOD1-G93A mice. <b><i>Results:</i></b> SMSCs from early presymptomatic (p40) to terminal, semi-paralytic (p120) SOD1-G93A mice demonstrated generally lower proliferation potential compared with age-matched controls. However, induced proliferation was observed in surgically denervated wild-type animals and SOD1-G93A animals at p90, when critical denervation arises. SMSCs from fast and slow muscles were similarly affected by mSOD1 expression. Lowered proliferation rate was generally corroborated with decreased relative MRF expression levels, although this was most prominent in early age and was modulated by muscle type origin. Cyclins controlling cell proliferation did not show modifications in their mRNA levels; however, the expression of cyclin-dependent kinase inhibitor 1A <i>(Cdkn1a)</i>, which is known to promote myoblast differentiation, was decreased in SOD1-G93A cultures. <b><i>Conclusions:</i></b> Our data suggest that the function of SMSCs is impaired in SOD1-G93A satellite cells from the earliest stages of the disease when no critical motor neuron loss has been described.
DOI: 10.6084/m9.figshare.28856267.v2
title: Supporting Information

description: This supporting information
DOI: 10.6084/m9.figshare.4620757.v1
title: PhyloTree.org database files

description: The PhyloTree.org website contains haplotype trees for human mtDNA and NRY. The contents of the website can be dumped to a spreadsheet (tab-separated) format, which is presented here in addition to a conversion to CSV and in import into SQLite. Input data in CSV format kindly provided by Mannis van Oven.
DOI: 10.6084/m9.figshare.25321915.v1
title: NATCITIES-23080325_data.csv

description: This is the dataset utilised for analysis.
DOI: 10.6084/m9.figshare.28730237.v1
title: U-Pb age data of detrital zircons and sampling location photos from the sandy lands in Northeast China

description: These documents include detrital zircon U-Pb data from the sandy lands of Northeast China, quantitative provenance analysis results of the Northeast sandy lands, and sampling location photos, among others.
DOI: 10.15482/usda.adc/26046271.v1
title: CPS Early-Stage Detection and Control of Leaf Diseases in Tomato Transplant Production: Mini T-REX tomato image dataset

description: The goal of this project is to develop an integrated Cyber Physical System (CPS) for early plant disease detection and control based on precise pathogen identification in transplant greenhouses. The system consists of three components: 1. a robotic platform to collect images and leaf DNA samples with possible pathogen infection. 2. a microfluidic device for on-board DNA sample extraction of all microbes, including the putative pathogens, and identification of pathogen by nanopore sequencing in near real-time. 3. a method of detection of disease spread using imaging and sequencing data, and to determine optimal control strategies. This dataset include tomato plants RGB images and depth data for 3D reconstruction using a robotic platform called Mini T-REX developed for this project.Who: Data were generated by a GRA from Virginia TechWhat: Multi-view RGBD images and longitudinal RGB images of plants (tomatoes, lettuce, and pennycress).Where: The experiments were conducted at a growth beds at Virginia Tech CRC with Mini T-REX.Why: To automate plant phenotyping, monitor plant growth, and collect data for 3D reconstruction and analysis. The goal is to develop affordable and readily available automation options for plant research.How: Using custom-built (Mini T-REX) and commercially available gantry-like robotic systems equipped with cameras and sensors.Experiment Setting:Location: The plants were grown in a controlled environment setting.Influential climatic conditions: Light cycles were controlled, with growth lights mimicking sunlight cycles (16 hours of light). Light intensity could be adjusted based on the crop species.Processing Methods and Equipment:Mini T-REX: Intel RealSense L515 LiDAR was used to capture RGB and depth (RGBD) images. SolidWorks and SW2URDF tool were used for CAD design and creating URDF files. ROS2 and MoveIt2 were used for motion planning and control.•Study Date(s) and Duration:The data for Mini T-REX was gathered over a span of 30 days in fall 2024The interval of image capturing was 4 hours every day.<br>Study Spatial Scale:Mini T-REX: The gantry footprint is 1650mm x 1650mm. The manipulator has a working radius of 280mm.Level of True Replication:The study involved multiple plants (tomatoes).Sampling Precision:Mini T-REX: Captured multi-view images from 6 predefined poses for each plant.Level of Subsampling:Mini T-REX: RGBD images were captured from 6 different poses.File Descriptions:These files include time stamped images captured during the experimental process.<br><br>
DOI: 10.6084/m9.figshare.12526529.v1
title: JVASP-25784 to JVASP-28212

description: JARVIS-DFT input/output files