cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2n6qtf
title: CCDC 2449335: Experimental Crystal Structure Determination

description: Related Article: Krishna Pandey, Priyanka Das, Amit Bijlwan, Dheeraj Kumar|2025|J.Org.Chem.|90|7700|doi:10.1021/acs.joc.5c00530
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.fpwqjh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammatoidea West & G.S.West, 1897",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((30.0251 -31.3959,30.5701 -30.7329,30.5701 -28.5786,25.5395 -28.5786,25.5395 -32.9007,28.2048 -32.9007,28.5753 -32.6569,29.4902 -31.7517,30.0251 -31.3959))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055413-250525065834625/datasets/export for details.
DOI: 10.15468/dl.uc4ba8
title: Occurrence Download

description: A dataset containing 163213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leontopodium discolor Beauverd, Artemisia austriaca Jacq., Artemisia abrotanum L., Solidago gigantea Aiton, Psephellus sibiricus (L.) Wagenitz)",
 "Geometry POLYGON ((-180 45.53015, 180 45.53015, 180 83.62313, -180 83.62313, -180 45.53015))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "CoordinateUncertaintyInMeters is less than or equal to 50000"
 ]
}

 The dataset includes 163213 records from 548 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055408-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28996382
title: RGB Color Correction and Gamut Limitations in Smartphone-Based Kinetic Analysis of Chemical Reactions [machine-readable supporting information]

description: The variability in hardware specifications and environmental factors poses sig-nificant challenges to the use of smartphone cameras in analytical measurement. Towards time-resolved color analysis and reaction monitoring, we systematically quantified multiple sources of measurement uncertainty in smartphone-based color measurements, finding that while sensor repeatability is high (∆E &lt; 0.5), lighting conditions and viewing angles can introduce substantial bias (∆E ver-sus reference colors increasing by up to 64% at oblique angles). We implemented and evaluated a matrix-based image color correction methodology using a color reference chart, reducing inter-device and lighting-dependent variations by 65-70% (quantified by the color change metric, ∆E). Moving beyond static image correction to video analysis, our approach was validated through the monitoring of Blue1 dye degradation kinetics using videos recorded on two different smartphones. Time-resolved and color-corrected measurements from both devices produced consistent kinetic profiles. Importantly, we identified a fundamental limitation in RGB-based colorimetry: highly saturated colors that exceed the sRGB color gamut create artificial discontinuities in kinetic profiles, manifesting as ”shouldering” effects not present in spectrophotometric data. Unlike previous methods that focused on controlling environmental factors through custom enclosures, our time-resolved color correction methodology systematically quantifies and corrects for multiple sources of color bias across various smartphone models, enabling standardized measurements even in variable conditions. This advancement enhances the reliability of field-ready, smartphone-based colorimet-ric applications and establishes a framework for calibrating video-based reaction monitoring against established spectroscopic measurements.
DOI: 10.6084/m9.figshare.28996382.v3
title: RGB Color Correction and Gamut Limitations in Smartphone-Based Kinetic Analysis of Chemical Reactions [machine-readable supporting information]

description: The variability in hardware specifications and environmental factors poses sig-nificant challenges to the use of smartphone cameras in analytical measurement. Towards time-resolved color analysis and reaction monitoring, we systematically quantified multiple sources of measurement uncertainty in smartphone-based color measurements, finding that while sensor repeatability is high (∆E &lt; 0.5), lighting conditions and viewing angles can introduce substantial bias (∆E ver-sus reference colors increasing by up to 64% at oblique angles). We implemented and evaluated a matrix-based image color correction methodology using a color reference chart, reducing inter-device and lighting-dependent variations by 65-70% (quantified by the color change metric, ∆E). Moving beyond static image correction to video analysis, our approach was validated through the monitoring of Blue1 dye degradation kinetics using videos recorded on two different smartphones. Time-resolved and color-corrected measurements from both devices produced consistent kinetic profiles. Importantly, we identified a fundamental limitation in RGB-based colorimetry: highly saturated colors that exceed the sRGB color gamut create artificial discontinuities in kinetic profiles, manifesting as ”shouldering” effects not present in spectrophotometric data. Unlike previous methods that focused on controlling environmental factors through custom enclosures, our time-resolved color correction methodology systematically quantifies and corrects for multiple sources of color bias across various smartphone models, enabling standardized measurements even in variable conditions. This advancement enhances the reliability of field-ready, smartphone-based colorimet-ric applications and establishes a framework for calibrating video-based reaction monitoring against established spectroscopic measurements.
DOI: 10.6084/m9.figshare.28996382.v2
title: RGB Color Correction and Gamut Limitations in Smartphone-Based Kinetic Analysis of Chemical Reactions [machine-readable supporting information]

description: The variability in hardware specifications and environmental factors poses significant challenges to the use of smartphone cameras in analytical measurement. We systematically quantified multiple sources of uncertainty in smartphone-based color measurements, finding that while sensor repeatability is high (∆E &lt; 0.5), lighting conditions and viewing angles can introduce substantial errors (∆E increasing by up to 64% at oblique angles). We implemented and evaluated a matrix-based image color correction methodology using a color reference chart, reducing inter-device and lighting-dependent variations by 65-70% (quantified by the color change metric, ∆E). Moving beyond static image correction to video analysis, our approach was validated through the monitoring of Blue1 dye degradation kinetics using videos recorded on two different smartphones. Time-resolved and color-corrected measurements from both devices produced consistent kinetic profiles. Importantly, we identified a fundamental limitation in RGB-based colorimetry: highly saturated colors that exceed the sRGB color gamut create artificial discontinuities in kinetic profiles, manifesting as ”shouldering” effects not present in spectrophotometric data. Unlike previous methods that focused on controlling environmental factors through custom enclosures, our color correction methodology systematically quantifies and corrects for multiple sources of uncer-tainty across various smartphone models, enabling standardized measurements even in variable conditions. This advancement enhances the reliability of field-ready, smartphone-based colorimetric applications and establishes a framework for calibrating video-based reaction monitoring against established spectroscopic measurements.
DOI: 10.15468/dl.j9x2hd
title: Occurrence Download

description: A dataset containing 3856 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Italy, Switzerland)",
 "OccurrenceStatus is Present",
 "TaxonKey is Sorghum halepense (L.) Pers."
 ]
}

 The dataset includes 3856 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055414-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tq5t62
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammatoidea West & G.S.West, 1897",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((30.5701 -24.0715,25.5395 -24.0715,25.5395 -28.5786,30.5701 -28.5786,30.5701 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055415-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.28734989
title: Giant Virus from Station ALOHA in North Pacific Subtropical Gyre

description: Metagenomic analysis of the Hawaii Ocean Timeseries generated 37 high-quality giant virus metagenome-assembled genome (MAG) and 1496 giant viral contigs (&gt;10 kbp). The MAGs are labeled as "HOT_MAG" and the assemby is labeled as "ncldv_final_qc_passed_10kb_contigs.fa" in the file inventory.Citation: Md Moinuddin Sheam, Elaine Luo, Vertical transport and spatiotemporal dynamics of giant viruses in the North Pacific Subtropical Gyre, <i>The ISME Journal</i>, 2025;, wraf094, https://doi.org/10.1093/ismejo/wraf094
DOI: 10.6084/m9.figshare.28734989.v1
title: Giant Virus from Station ALOHA in North Pacific Subtropical Gyre

description: Metagenomic analysis of the Hawaii Ocean Timeseries generated 37 high-quality giant virus metagenome-assembled genome (MAG) and 1496 giant viral contigs (&gt;10 kbp). The MAGs are labeled as "HOT_MAG" and the assemby is labeled as "ncldv_final_qc_passed_10kb_contigs.fa" in the file inventory.Citation: Md Moinuddin Sheam, Elaine Luo, Vertical transport and spatiotemporal dynamics of giant viruses in the North Pacific Subtropical Gyre, <i>The ISME Journal</i>, 2025;, wraf094, https://doi.org/10.1093/ismejo/wraf094
DOI: 10.15468/dl.w2fqhp
title: Occurrence Download

description: A dataset containing 11172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-121.06115 49.20652,-121.09885 49.21184,-121.107 49.20319,-121.13146 49.18321,-121.16101 49.17322,-121.17935 49.1499,-121.19463 49.12724,-121.18342 49.10589,-121.15184 49.08588,-121.13655 49.06519,-121.12127 49.04382,-121.09885 49.02244,-121.10293 49.00173,-121.02243 49.00239,-121.01938 49.01843,-121.04383 49.0525,-121.06829 49.07387,-121.08663 49.09856,-121.11617 49.11256,-121.13452 49.1279,-121.12331 49.1399,-121.09783 49.1519,-121.07949 49.16722,-121.06013 49.17788,-121.0581 49.18921,-121.06115 49.20652))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11172 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055417-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6w23w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammatoidea West & G.S.West, 1897",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1332 -20.158,25.5395 -23.2724,25.5395 -24.0715,30.5701 -24.0715,30.5701 -20.3186,29.6496 -19.6123,28.947 -19.4003,28.1821 -19.4609,27.6072 -19.7214,27.1332 -20.158))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055418-250525065834625/datasets/export for details.
DOI: 10.15468/dl.drgvxk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammatoidea West & G.S.West, 1897",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.0214 -34.0501,25.5395 -34.1098,25.5395 -32.9007,20.509 -32.9007,20.509 -34.5676,20.524 -34.555,20.8859 -34.5419,20.9606 -34.4398,21.2995 -34.5131,21.5296 -34.4338,21.8696 -34.4439,22.0323 -34.2835,22.221 -34.2428,22.2566 -34.1304,22.5993 -34.0741,22.9652 -34.1674,23.4069 -34.1858,23.4955 -34.0792,23.6056 -34.0563,24.8471 -34.2877,24.9447 -34.2397,25.0214 -34.0501))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055419-250525065834625/datasets/export for details.
DOI: 10.15468/dl.j9kyfv
title: Occurrence Download

description: A dataset containing 7049 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pentanema hirtum (L.) D.Gut.Larr., Santos-Vicente, Anderb., E.Rico & M.M.Mart.Ort., Tanacetum bipinnatum (L.) Sch.Bip., Alnus hirsuta (Spach) Rupr., Corylus sieboldiana Blume, Corylus heterophylla Fisch. ex Trautv.)",
 "Geometry POLYGON ((-180 45.53015, 180 45.53015, 180 83.62313, -180 83.62313, -180 45.53015))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "CoordinateUncertaintyInMeters is less than or equal to 50000"
 ]
}

 The dataset includes 7049 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055420-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xs8qs5
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "TaxonKey is Liolaemus araucaniensis Müller & Hellmich, 1932"
 ]
}

 The dataset includes 28 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055421-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15693709
title: Virus Pathogen Database for EsViritu

description: Databases for EsViritu: Read mapping pipeline for detection and measurement of virus pathogens from metagenomic data

 

File descriptions

v3.1.0/





virus_pathogen_database.all_metadata.tsv = sequence and taxonomy info for each sequence in database




virus_pathogen_database.fna = fasta formatted nucleotide database of all virus genomes and segments




virus_pathogen_database.mmi = minimap2 formatted index of database (for short read mapping)



 

Relates to the tool in the following repository:

EsViritu
DOI: 10.15468/dl.ete85h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammatoidea West & G.S.West, 1897",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((32.064 -28.9416,32.4847 -28.5786,30.5701 -28.5786,30.5701 -30.7329,30.6252 -30.6659,31.4179 -29.4257,31.8178 -29.0299,32.064 -28.9416))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055422-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15693732
title: Data for "Guidelines for Boosting Long-Lasting Free Software Contributors" [DebConf 2025 Academic Track]
DOI: 10.5281/zenodo.15693432
title: Data corresponding to the plots for the article entitled "Spatially Resolved Photon Statistics of General Nanophotonic Systems" (DOI: https://doi.org/10.1103/z3cr-l7pw)
DOI: 10.5281/zenodo.15693744
title: Data corresponding to the plots for the article entitled "Spatially Resolved Photon Statistics of General Nanophotonic Systems" (DOI: https://doi.org/10.1103/z3cr-l7pw)
DOI: 10.15468/dl.qpjuxd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ammatoidea West & G.S.West, 1897",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.5808 -24.13,35.5909 -24.0715,30.5701 -24.0715,30.5701 -28.5786,32.4847 -28.5786,32.55 -28.5222,33.0346 -26.8668,32.9741 -26.7838,33.0415 -26.059,32.9304 -26.0011,32.7994 -26.1281,32.6834 -26.0015,32.813 -25.8728,32.8513 -25.7166,33.3048 -25.3731,35.1489 -24.6699,35.5808 -24.13))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055424-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15299853
title: Microglia regulate GABAergic neurogenesis in prenatal human brain through IGF1

description: Seurat Objects of snRNAseq data of postmortem embryonic and perinatal human sampels (h_pre_peri_DY for all, INS for interneurons) as well as MGE organoids(organoid6w_DY), induced microglia isolated from MGE organoids (img) in manuscript "Microglia regulate GABAergic neurogenesis in prenatal human brain through IGF1"
DOI: 10.5281/zenodo.15299852
title: Microglia regulate GABAergic neurogenesis in prenatal human brain through IGF1

description: Seurat Objects of snRNAseq data of postmortem embryonic and perinatal human sampels (h_pre_peri_DY for all, INS for interneurons) as well as MGE organoids(organoid6w_DY), induced microglia isolated from MGE organoids (img) in manuscript "Microglia regulate GABAergic neurogenesis in prenatal human brain through IGF1"
DOI: 10.15468/dl.wervqh
title: Occurrence Download

description: A dataset containing 100780 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Canada, Mexico)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dryopteris Adans."
 ]
}

 The dataset includes 100780 records from 344 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055416-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4fd8k
title: Occurrence Download

description: A dataset containing 1081947 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus robur L."
 ]
}

 The dataset includes 1081947 records from 2370 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055501-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wew833
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Schistura dayi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016915-250914085247600/datasets/export for details.
DOI: 10.15468/dl.7f6ww8
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus armeniacus",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 112 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016916-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zt4hr6
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus armeniacus",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016917-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7wywj
title: Occurrence Download

description: A dataset containing 7063 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus armeniacus",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7063 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016918-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4353g
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acrosterigma attenuatum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 77 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016919-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.