cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17028/rd.lboro.22203121
title: Supplementary information files for Monofunctionalized fluorinated bambusurils and their conjugates for anion transport and extraction

description: Supplemental files for article Monofunctionalized fluorinated bambusurils and their conjugates for anion transport and extraction <br> Bambusurils are macrocyclic molecules that are known for their high binding affinity and selectivity toward anions. Here, we present the preparation of two bambusurils bearing fluorinated substituents and one carboxylic function. These monofunctionalized bambusurils were conjugated with crown ether and cholesterol units. The resulting conjugates were successfully tested in liquid-liquid extraction of inorganic salts and chloride/bicarbonate transport across lipid bilayers.
DOI: 10.5281/zenodo.7692520
title: nicoediaz/RegretCovid: Initial Release

description: Dataset used in the paper "Regret, Delete, (Do Not) Repeat: An Analysis of Self-Cleaning Practices on Twitter After the Outbreak of the COVID-19 Pandemic" (Diaz Ferreyra et al., 2023)
DOI: 10.5281/zenodo.7692521
title: nicoediaz/RegretCovid: Initial Release

description: Dataset used in the paper "Regret, Delete, (Do Not) Repeat: An Analysis of Self-Cleaning Practices on Twitter After the Outbreak of the COVID-19 Pandemic" (Diaz Ferreyra et al., 2023)
DOI: 10.5066/p9bqmyjz
title: Alkenone temperature estimates from the Miocene (Burdigalian, Langhian, Tortonian) and Pliocene (Zanclean) Atlantic Coastal Plain sediments

description: This dataset collects sea surface temperature data generated through alkenone analysis of Neogene sediments collected from cores and outcrops of the Virginia and Maryland Atlantic Coastal Plain.
DOI: 10.5281/zenodo.7692568
title: Random cohesion field

description: This file contains a 2D random cohesion field used that can be used as an initial condition for the simulation of shear banding.
DOI: 10.5281/zenodo.7692596
title: Pearl River ADCP data - momentum redistribution

description: These three-dimensional velocity data were acquired using a boat-mounted acoustic Doppler current profiler (ADCP) on a series of six consecutive meander bends of the Pearl River, near Bogalusa, Louisiana. Data were collected during campaigns in 2017 and 2018. In this published dataset, there are raw ADCP files, as well as processed data provided within a Matlab .mat file.
DOI: 10.5281/zenodo.7692595
title: Pearl River ADCP data - momentum redistribution

description: These three-dimensional velocity data were acquired using a boat-mounted acoustic Doppler current profiler (ADCP) on a series of six consecutive meander bends of the Pearl River, near Bogalusa, Louisiana. Data were collected during campaigns in 2017 and 2018. In this published dataset, there are raw ADCP files, as well as processed data provided within a Matlab .mat file.
DOI: 10.6084/m9.figshare.22193497
title: Figure S15: alignment and tree-file: Phylogenetic analyses of Rab and TBC proteins in Anaeramoeba

description: Phylogenetic analyses of Rab proteins of subfamilies containing endocytic Rabs <strong>a,</strong> Rabs 2, 4, and 14 <strong>b,</strong> and Rabs 1, 8, and 18 <strong>c,</strong>.<strong> d, </strong>Phylogenetic analysis of TBC proteins. <br> For membrane-trafficking proteins, <em>Anaeramoeba</em> datasets were searched by BLAST using queries from previous studies (Elias et al. 2012; Gabernet-Castello et al. 2013; Klinger, Klute, and Dacks 2013). Identified Rab and TBC proteins were subjected to orthologous clustering by OrthoFinder v2.0.0 (Emms and Kelly 2019) including proteins from human, cnidarian <em>Nematostella vectensis</em>, and heterolobosean <em>Naegleria gruberi</em>. Phylogenetic analyses for selected Rab sub-families and TBC proteins were conducted. Sequences were aligned by MAFFT v7.458 (Katoh and Standley 2013) under L-INS-i strategy, and poorly aligned positions were removed by trimAl v1.4.rev15 (Capella-Gutierrez, Silla-Martinez, and Gabaldon 2009) using -gt 0.8. Maximum-likelihood trees were inferred by IQ-TREE v1.6.8 (Nguyen et al. 2015) using the posterior mean site frequency method (H.-C. Wang et al. 2018) and the LG+C20+F+G model, with the guide tree inferred under the LG+F+G model. Branch supports were obtained by the ultrafast bootstrap approximation with 1,000 replicates.
DOI: 10.6084/m9.figshare.22193497.v1
title: Figure S15: alignment and tree-file: Phylogenetic analyses of Rab and TBC proteins in Anaeramoeba

description: Phylogenetic analyses of Rab proteins of subfamilies containing endocytic Rabs <strong>a,</strong> Rabs 2, 4, and 14 <strong>b,</strong> and Rabs 1, 8, and 18 <strong>c,</strong>.<strong> d, </strong>Phylogenetic analysis of TBC proteins. <br> For membrane-trafficking proteins, <em>Anaeramoeba</em> datasets were searched by BLAST using queries from previous studies (Elias et al. 2012; Gabernet-Castello et al. 2013; Klinger, Klute, and Dacks 2013). Identified Rab and TBC proteins were subjected to orthologous clustering by OrthoFinder v2.0.0 (Emms and Kelly 2019) including proteins from human, cnidarian <em>Nematostella vectensis</em>, and heterolobosean <em>Naegleria gruberi</em>. Phylogenetic analyses for selected Rab sub-families and TBC proteins were conducted. Sequences were aligned by MAFFT v7.458 (Katoh and Standley 2013) under L-INS-i strategy, and poorly aligned positions were removed by trimAl v1.4.rev15 (Capella-Gutierrez, Silla-Martinez, and Gabaldon 2009) using -gt 0.8. Maximum-likelihood trees were inferred by IQ-TREE v1.6.8 (Nguyen et al. 2015) using the posterior mean site frequency method (H.-C. Wang et al. 2018) and the LG+C20+F+G model, with the guide tree inferred under the LG+F+G model. Branch supports were obtained by the ultrafast bootstrap approximation with 1,000 replicates.
DOI: 10.18712/nsd-nsd3056-v1
title: Norwegian Citizen Panel Round 24, 2022

description: The Norwegian Citizens' Panel is an infrastructure for research, which has had a license since 2013. The Panel is a web-based survey that makes a random selection from the population. Recruitment has been done in 2013, 2014, 2017, 2018 and 2019. Supplementary recruitment is now done annually.

There are now six research groups linked to the Norwegian Citizens' Panel:
1) Climate and environment, 2) Basic research on political behavior and democracy. 3) Diversity, extremism and human rights, 4) Health, 5) Political communication, 6) Local and regional democracy.

The purpose will always be research linked to the Norwegian Citizens' Panel. This is mainly social science research, but we also have collaborations with humanities subjects (especially linguistics), natural sciences (especially climate research), medical subjects (especially user involvement/health prioritization/social medicine). You can read more on the websites: uib.no/medborger and uib.no/digsscore
DOI: 10.6084/m9.figshare.20375619
title: Figure 2: alignment and tree-file: Anaeramoeba symbionts are closely related to Desulfobacter and acquired in separate events

description: The phylogenomic analysis was based on 36 taxa, 108 proteins, and 25,918 sites with IQTree v2.2.0.3 (LG+C60+F+G model of evolution). Bipartition support values are derived from 100 non-parametric bootstraps using the PMSF approximation of the above guide tree using IQTree v2.2.0.3 under the LG+C60+F+G model of evolution. <br>
DOI: 10.6084/m9.figshare.20375619.v1
title: Figure 2: alignment and tree-file: Anaeramoeba symbionts are closely related to Desulfobacter and acquired in separate events

description: The phylogenomic analysis was based on 36 taxa, 108 proteins, and 25,918 sites with IQTree v2.2.0.3 (LG+C60+F+G model of evolution). Bipartition support values are derived from 100 non-parametric bootstraps using the PMSF approximation of the above guide tree using IQTree v2.2.0.3 under the LG+C60+F+G model of evolution. <br>
DOI: 10.6084/m9.figshare.20375601
title: Figure S6: alignment and tree-file: The Anaeramoeba symbionts belong to the Desulfobacteraceae family.

description: Figure S6: The Anaeramoeba symbionts belong to the Desulfobacteraceae family. The phylogenomic analysis is inferred from 168 taxa, 15 ribosomal proteins, and 2,226 sites. The ML tree was estimated with IQTree under the LG+C20+F+Gamma model of evolution. Bipartition support values are derived from 1,000 ultrafast bootstrap / SH-aLRT bootstraps.
DOI: 10.14284/596
title: Plastic clean-up and prevention overview

description: In this dataset 124 plastic remediation technologies are listed with 29 of their key characteristics. The dataset has been compiled by merging a systematic literature review performed on the 29th of June 2022 on the electronic database Scopus and a non-systematic review.
DOI: 10.5281/zenodo.7692455
title: disdrometer raw data

description: Parsivel2 disdrometric raw dataset for 4 years in ASCII
DOI: 10.5281/zenodo.7692454
title: disdrometer raw data

description: Parsivel2 disdrometric raw dataset for 4 years in ASCII
DOI: 10.5281/zenodo.7692654
title: nicoediaz/PRIVACY-SCPS: Initial Release

description: Replication package of the paper "Developers Need Protection, Too: Perspectives and Research Challenges for Privacy in Social Coding Platforms" (Diaz Ferreyra et al., 2023)
DOI: 10.5281/zenodo.7692653
title: nicoediaz/PRIVACY-SCPS: Initial Release

description: Replication package of the paper "Developers Need Protection, Too: Perspectives and Research Challenges for Privacy in Social Coding Platforms" (Diaz Ferreyra et al., 2023)
DOI: 10.6084/m9.figshare.22203364
title: What makes a citizen datasets

description: The following datasets are included - a dataset including all variables from 300 German survey respondents - an additional dataset that includes the open-ended survey responses and the codes that were allocated to them. On this basis binary variables were coded manually (additional files on request) - a zip file including all downloaded tweets and their codings.
DOI: 10.6084/m9.figshare.22203364.v1
title: What makes a citizen datasets

description: The following datasets are included - a dataset including all variables from 300 German survey respondents - an additional dataset that includes the open-ended survey responses and the codes that were allocated to them. On this basis binary variables were coded manually (additional files on request) - a zip file including all downloaded tweets and their codings.
DOI: 10.25345/c5901zr80
title: MassIVE MSV000091395 - Methionine stress induces ferroptosis in methionine dependent cancer cells
title: Dietary methionine restriction is associated with a reduction in tumor growth in preclinical studies and an increase in lifespan in animal models. The mechanism by which methionine restriction inhibits tumor growth while sparing normal cells is incompletely understood, except for the observation that normal cells can utilize methionine or homocysteine interchangeably (methionine independence) while most cancer cells are strictly dependent on methionine availability. Here, we compared a typical methionine dependent and a rare methionine independent melanoma cell line. We found that replacing methionine with homocysteine generally induced hypomethylation in gene promoters. We isolated nuclear proteins and submitted it for tandem mass tag (TMT) proteomics. This analysis revealed that several proteins involved in the mitochondrial integrated stress response (ISR) were upregulated in response to the replacement of methionine to homocysteine in both cell lines, but to a much greater degree in the methionine dependent cell line. Consistent with the ISR signature, a proteomic analysis of a subcellular fraction enriched for mitochondrial content revealed a strong enrichment for proteins involved in oxidative phosphorylation. Analysis of cellular bioenergetics confirmed that homocysteine induces a decrease in ATP production from oxidative phosphorylation and glycolysis, but to a similar extent in methionine dependent and methionine independent cells. The mitochondrial integrated stress response shared a signature with ferroptosis. Methionine dependent cells displayed a strong ferroptotic signature, which was decreased by half in methionine independent cells. Consistent with ferroptosis, malonaldehyde was increased in methionine independent cells grown in homocysteine, and viability could be rescued with the inhibitor ferrostatin. Therefore, we propose that methionine stress induces ferroptotic cell death in methionine dependent cancer cells.
DOI: 10.5281/zenodo.6567838
title: Modeling polar cap airglow patch intensities using three-dimensional ionospheres produced by data assimilations

description: Qaanaaq imager data supporting the paper entitled Modeling polar cap airglow patch intensities using three-dimensional ionospheres produced by data assimilations.
DOI: 10.5281/zenodo.6567837
title: Modeling polar cap airglow patch intensities using three-dimensional ionospheres produced by data assimilations

description: Qaanaaq imager data supporting the paper entitled Modeling polar cap airglow patch intensities using three-dimensional ionospheres produced by data assimilations.
DOI: 10.5281/zenodo.7670390
title: Atmospheric methane since the LGM was driven by wetland sources

description: Companion data set to Kleinen et al. (2023):<br> Thomas Kleinen, Sergey Gromov, Benedikt Steil, and Victor Brovkin<br> Atmospheric methane since the LGM was driven by wetland sources<br> Climate of the Past, 2023 Model output from the MPIESM model, model experiments base and MWM.<br> See Kleinen et al. (2023) for details. Timeseries data plotted in all Figures:<br> Global mean temperature, total land carbon; CH4 concentrations and fluxes; NO and RC fluxes; atmospheric lifetimes. Time axis in netcdf files is negative years before present, i.e. year -20000 is 20000 years before present (present=1950 CE).<br> Time is represented as absolute time YYMMDD.f, with YY negative year BP, MM mmonth and DD day, f is fractional daytime.<br>
DOI: 10.5517/cc8yhd2
title: CCDC 266674: Experimental Crystal Structure Determination

description: Related Article: A.L.Spek|2005|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccvmxx8
title: CCDC 793721: Experimental Crystal Structure Determination

description: Related Article: Jia-Cheng Liu, Li-Wei Chen, Xue-Yan Song, Hui-Qin Hong, Zhao-Xia Chu|2011|Jiegou Huaxue|30|764|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1p938c
title: CCDC 1557882: Experimental Crystal Structure Determination

description: Related Article: Ulrich Flörke, Alexander Oppermann, Gerald Henkel|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccrvkfk
title: CCDC 710719: Experimental Crystal Structure Determination

description: Related Article: John D. Kildea, Brian W. Skelton, Neil Somers, Alexandre N. Sobolev, Allan H. White|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21444144.v1
title: Circles App Evaluation Trial Data

description: This dataset was produced in a 4 week randomised control trial of the Circles app v2, from the SERVICE project (https://serviceproject.org.uk/) funded by the EPSRC. <br> <strong>The SERVICE project is a non-profit academic effort to understand and support the emotional needs of older adults impacted by COVID-19.</strong> <br> <br> We seek to understand experiences of the pandemic among older people and their supporters. <br> <br> We are creating a non-profit and open-source digital platform which helps people support each other while respecting and protecting their privacy and security. <br> <br> <br> <br> <strong>Our planned academic contributions are:</strong> <br> <br> To share multi-method datasets, presentations, and publications on older people’s experiences of COVID-19, well-being, loneliness, emotion regulation, and social support. <br> This dataset contains 1) csv file with pre, mid, and end point survey data (0, 2 weeks, 4 weeks) captured from January 2022, and the documentation accompanying the surveys including the qualtrics files. 2) anonymised app data collected by the Circles app over the 4 week trial. 3) screenshots of the Circles app. The code for the app itself is available on Github: https://github.com/OU-STEM-SIES/SERVICE_server and https://github.com/OU-STEM-SIES/SERVICE_mobile All data have been anonymised and are not linkable to participant personal information. <br> This study was approved by the ethics comittees at the collaborating institutions (Nottingham Trent University, University of Exeter, and the Open University). <br> Study Design: An online mixed methods 4-week randomised 2 x 3 trial with an app using group compared to a wait list control. The app group also completed post-trial interviews (transcripts have not been made available). <br> Methods: Older adults (<em>N</em>=102, aged 50+) completed three surveys with quantitative measures of loneliness, wellbeing, mental health. Participants in the app using group were encouraged to use the app daily to log their wellbeing, loneliness, activities, social connections and time spent in different locations. <br>
DOI: 10.48650/dy8t-0s49
title: Argentina soy supply chain (2015-2019)

description: This Trase dataset describes the supply chain of Argentinean soybeans from departments of production to countries of import. The data provides volumes (in tonnes) and value of soy exports (in US dollars), as well as the deforestation exposure in the supply chain of companies and countries.
DOI: 10.6084/m9.figshare.14802978
title: The experience of using a hospital bed alternative at home among individuals with spinal cord injury: A case series

description: To inform clinicians’ equipment recommendations by characterizing the experiences, skin integrity, and interface pressures in a series of recently discharged individuals with spinal cord injury (SCI) who chose to use an alternative adjustable bed system at home rather than a standard of care hospital bed with mattress overlay. Mixed methods, observational case series. Community based. Four individuals with cervical SCIs and one partner of a participant with SCI completed interviews about their experiences using an alternative adjustable bed system and their skin health. Participants also underwent pressure mapping on their alternative adjustable bed system and on a standard of care hospital bed with mattress overlay. Interview themes were identified using a consensus qualitative approach. Pressure readings at the sacrum and ischial tuberosities in supine and at the greater trochanter in side lying were compared between surfaces. Semi-structured interview, questionnaire, and pressure mapping. All participants reported positive experiences utilizing an alternative adjustable bed system and no episodes of bed-related skin breakdown. Reasons for wanting an alternative adjustable bed included a greater sense of normalcy and larger size. Participants perceived their alternative beds to be comfortable, and to have features that aided their function and assisted their caregivers. Features used included head of bed elevation, height elevation, and bed rails. All participants had clinically acceptable pressure mapping patterns on the alternative adjustable bed system. An adjustable bed system, combined with other skin protection strategies, may be appropriate for certain individuals with spinal cord injury.
DOI: 10.6084/m9.figshare.14802978.v1
title: The experience of using a hospital bed alternative at home among individuals with spinal cord injury: A case series

description: To inform clinicians’ equipment recommendations by characterizing the experiences, skin integrity, and interface pressures in a series of recently discharged individuals with spinal cord injury (SCI) who chose to use an alternative adjustable bed system at home rather than a standard of care hospital bed with mattress overlay. Mixed methods, observational case series. Community based. Four individuals with cervical SCIs and one partner of a participant with SCI completed interviews about their experiences using an alternative adjustable bed system and their skin health. Participants also underwent pressure mapping on their alternative adjustable bed system and on a standard of care hospital bed with mattress overlay. Interview themes were identified using a consensus qualitative approach. Pressure readings at the sacrum and ischial tuberosities in supine and at the greater trochanter in side lying were compared between surfaces. Semi-structured interview, questionnaire, and pressure mapping. All participants reported positive experiences utilizing an alternative adjustable bed system and no episodes of bed-related skin breakdown. Reasons for wanting an alternative adjustable bed included a greater sense of normalcy and larger size. Participants perceived their alternative beds to be comfortable, and to have features that aided their function and assisted their caregivers. Features used included head of bed elevation, height elevation, and bed rails. All participants had clinically acceptable pressure mapping patterns on the alternative adjustable bed system. An adjustable bed system, combined with other skin protection strategies, may be appropriate for certain individuals with spinal cord injury.