cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25402/cer.16431300
title: CER-2021-0131 Supplementary Materials: Comparative effectiveness analysis between entrectinib clinical trial and crizotinib real-world data in ROS1+ NSCLC

description: Supplementary Materialso Censoringo Statistical methodso Sensitivity analyseso Unadjusted resultso Propensity scoreSupplementary Tables 1-7o Supplementary Table 1. Censoring rules for TTD, PFS, and OS.o Supplementary Table 2. Propensity score matching.o Supplementary Table 3. Comparison of results of the Cox pro-portional hazard model using BICR or investigator-assessed progression in the trial.o Supplementary Table 4. Landmark analyses at 1 and 3 months for TTD and PFS.o Supplementary Table 5. Sensitivity analysis of the TTD.o Supplementary Table 6. Subgroup analysis by CNS status: unad-justed TTD and PFS.o Supplementary Table 7. Multivariate Cox model of treatment effect by CNS status.Supplementary Figure 1. Swimmer plot of patients receiving treatment beyond progression (TBP) in the crizotinib cohort (37 out of 65 patients received TBP).<br>
DOI: 10.5281/zenodo.5244636
title: ManyTypes4Py: A Benchmark Python Dataset for Machine Learning-Based Type Inference

description: The dataset is gathered on Sep. 17th 2020 from GitHub. It has <em>clean</em> and <em>complete</em> versions (from v0.7): The clean version has 5.1K <strong>type-checked </strong>Python repositories and 1.2M type annotations. The complete version has 5.2K Python repositories and 3.3M type annotations. The dataset's source files are type-checked using mypy (clean version). The dataset is also de-duplicated using the CD4Py tool. Check out the <strong>README.MD</strong> file for the description of the dataset. Notable changes to each version of the dataset are documented in <strong>CHANGELOG.md</strong>. The dataset's scripts and utilities are available on its GitHub repository.
description: {"references": ["A. Mir, E. Latoskinas and G. Gousios, \"ManyTypes4Py: A Benchmark Python Dataset for Machine Learning-Based Type Inference,\" in 2021 2021 IEEE/ACM 18th International Conference on Mining Software Repositories (MSR), 2021 pp. 585-589. doi: 10.1109/MSR52588.2021.00079"]}
DOI: 10.5281/zenodo.4044635
title: ManyTypes4Py: A Benchmark Python Dataset for Machine Learning-Based Type Inference

description: The dataset is gathered on Sep. 17th 2020 from GitHub. It has <em>clean</em> and <em>complete</em> versions (from v0.7): The clean version has 5.1K <strong>type-checked </strong>Python repositories and 1.2M type annotations. The complete version has 5.2K Python repositories and 3.3M type annotations. The dataset's source files are type-checked using mypy (clean version). The dataset is also de-duplicated using the CD4Py tool. Check out the <strong>README.MD</strong> file for the description of the dataset. Notable changes to each version of the dataset are documented in <strong>CHANGELOG.md</strong>. The dataset's scripts and utilities are available on its GitHub repository.
description: {"references": ["A. Mir, E. Latoskinas and G. Gousios, \"ManyTypes4Py: A Benchmark Python Dataset for Machine Learning-Based Type Inference,\" in 2021 2021 IEEE/ACM 18th International Conference on Mining Software Repositories (MSR), 2021 pp. 585-589. doi: 10.1109/MSR52588.2021.00079"]}
DOI: 10.5281/zenodo.5244798
title: Dataset: Impact of salinization on lake stratification and spring mixing v0.95 L&O Letters Revision

description: Scripts, model configurations and outputs to process the data and recreate the figures from Ladwig, R., Rock, L.A, Dugan, H.A. (-): Impact of salinization on lake stratification and spring mixing. This repository includes the setup and output from the lake model ensemble (GLM, GOTM, Simstrat) ran on the lakes Mendota and Monona. Scripts to run the models are located under /numerical and the scripts to process the results for the discussion of the paper are in the top main repository. The scripts to derive the theoretical solution are located under /analytical. Buoy monitoring data are located under /fieldmonitoring. The final figures are located under /figs_HD.
DOI: 10.5281/zenodo.5244924
title: Effects of acute exposure to moderate altitude on blood pressure and sleep breathing patterns - RAW DATA

description: Raw data of the study "Effects of acute exposure to moderate altitude on blood pressure and sleep breathing patterns" by <strong>Torlasco Camilla</strong>, Bilo Grzegorz Marek, Giuliano Andrea, Soranna Davide, Ravaro Silvia, Oliverio Giorgio, Faini Andrea, Zambon Antonella, Lombardi Carolina, Parati Gianfranco. <em>INTERNATIONAL JOURNAL OF CARDIOLOGY</em> 2020.
DOI: 10.5281/zenodo.5244923
title: Effects of acute exposure to moderate altitude on blood pressure and sleep breathing patterns - RAW DATA

description: Raw data of the study "Effects of acute exposure to moderate altitude on blood pressure and sleep breathing patterns" by <strong>Torlasco Camilla</strong>, Bilo Grzegorz Marek, Giuliano Andrea, Soranna Davide, Ravaro Silvia, Oliverio Giorgio, Faini Andrea, Zambon Antonella, Lombardi Carolina, Parati Gianfranco. <em>INTERNATIONAL JOURNAL OF CARDIOLOGY</em> 2020.
DOI: 10.5517/ccdc.csd.cc26xxln
title: CCDC 2053582: Experimental Crystal Structure Determination

description: Related Article: Subhash Garhwal, Alexander Kaushansky, Natalia Fridman, Graham de Ruiter|2021|Chem Cat.|1|631|doi:10.1016/j.checat.2021.05.002
DOI: 10.5517/ccdc.csd.cc26xxmp
title: CCDC 2053583: Experimental Crystal Structure Determination

description: Related Article: Subhash Garhwal, Alexander Kaushansky, Natalia Fridman, Graham de Ruiter|2021|Chem Cat.|1|631|doi:10.1016/j.checat.2021.05.002
DOI: 10.5517/ccdc.csd.cc26bq4f
title: CCDC 2036084: Experimental Crystal Structure Determination

description: Related Article: Lisa M. van Wyk, Leigh Loots, Leonard J. Barbour|2021|Chem.Commun.|57|7693|doi:10.1039/D1CC01717A
DOI: 10.5517/ccdc.csd.cc27gs2l
title: CCDC 2069779: Experimental Crystal Structure Determination

description: Related Article: Lincong Sun, Bingxian Liu, Yanlian Zhao, Junbiao Chang, Lingheng Kong, Fen Wang, Wei-Qiao Deng, Xingwei Li|2021|Chem.Commun.|57|8268|doi:10.1039/D1CC02888J
DOI: 10.5517/ccdc.csd.cc27m1nl
title: CCDC 2073889: Experimental Crystal Structure Determination

description: Related Article: Lincong Sun, Bingxian Liu, Yanlian Zhao, Junbiao Chang, Lingheng Kong, Fen Wang, Wei-Qiao Deng, Xingwei Li|2021|Chem.Commun.|57|8268|doi:10.1039/D1CC02888J
DOI: 10.5517/ccdc.csd.cc27m1qn
title: CCDC 2073891: Experimental Crystal Structure Determination

description: Related Article: Lincong Sun, Bingxian Liu, Yanlian Zhao, Junbiao Chang, Lingheng Kong, Fen Wang, Wei-Qiao Deng, Xingwei Li|2021|Chem.Commun.|57|8268|doi:10.1039/D1CC02888J
DOI: 10.5517/ccdc.csd.cc283vmw
title: CCDC 2089078: Experimental Crystal Structure Determination

description: Related Article: Taylor V. Fetrow, Scott R. Daly|2021|Dalton Trans.|50|11472|doi:10.1039/D1DT01932E
DOI: 10.5517/ccdc.csd.cc283vs1
title: CCDC 2089083: Experimental Crystal Structure Determination

description: Related Article: Taylor V. Fetrow, Scott R. Daly|2021|Dalton Trans.|50|11472|doi:10.1039/D1DT01932E
DOI: 10.5281/zenodo.5235278
title: Qualitative dataset - Socially just urban food policy implementation: a case study in Groningen (NL)

description: This qualitative dataset contains the transcripts of 43 interviews that have been conducted with members of social food initiatives (e.g. community gardens and orchards, food assistance, social restaurants, food education projects, social employment trajectories, fair trade campaigns, and so on) in the city of Groningen, as well as the interview guide and the information sheet and consent form that have been used during data collection. In addition, the upload includes the interview guide, posters, assessment table, information sheet and consent form that have been used in a two-part focus group with 3 food policy coordinators of the municipality of Groningen. The data was collected from November 2019 till March 2020. The transcripts have been analysed in NVivo (qualitative data analysis software).The link to and abstract of the paper based on this dataset will be provided when our manuscript gets published. <em>This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 765389. </em> Project webpage: https://recoms.eu/
DOI: 10.5281/zenodo.5235277
title: Qualitative dataset - Socially just urban food policy implementation: a case study in Groningen (NL)

description: This qualitative dataset contains the transcripts of 43 interviews that have been conducted with members of social food initiatives (e.g. community gardens and orchards, food assistance, social restaurants, food education projects, social employment trajectories, fair trade campaigns, and so on) in the city of Groningen, as well as the interview guide and the information sheet and consent form that have been used during data collection. In addition, the upload includes the interview guide, posters, assessment table, information sheet and consent form that have been used in a two-part focus group with 3 food policy coordinators of the municipality of Groningen. The data was collected from November 2019 till March 2020. The transcripts have been analysed in NVivo (qualitative data analysis software).The link to and abstract of the paper based on this dataset will be provided when our manuscript gets published. <em>This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 765389. </em> Project webpage: https://recoms.eu/
DOI: 10.5281/zenodo.5244714
title: Modeling of diffuse auroral emission at Mars: Contribution of MeV protons

description: This dataset contains the input parameters and the simulated results used for figures in the paper "Modeling of diffuse auroral emission at Mars: Contribution of MeV protons" by Y. Nakamura, N. Terada, F. Leblanc, A. Rahmati, H. Nakagawa, S. Sakai, S. Hiruba, R. Kataoka, and K. Murase. Detailed informations about the data files can be found in "README.txt".
DOI: 10.6084/m9.figshare.16432119
title: gastrulation_e75.h5ad

description: Perspectives in RNA velocity<br>scRNA-seq dataset of mouse gastrulation E7.5, containing spliced and unspliced reads, from<br>https://doi.org/10.1101/2020.12.21.423773,https://doi.org/10.1038/s41586-019-0933-9<br>
DOI: 10.6084/m9.figshare.16432119.v1
title: gastrulation_e75.h5ad

description: Perspectives in RNA velocity<br>scRNA-seq dataset of mouse gastrulation E7.5, containing spliced and unspliced reads, from<br>https://doi.org/10.1101/2020.12.21.423773,https://doi.org/10.1038/s41586-019-0933-9<br>
DOI: 10.17632/dfb34rpyw2.1
title: DynDen: Assessing convergence of molecular dynamics simulations of interfaces

description: Molecular dynamics is a simulation technique used to predict the physical properties of systems based on their chemical structure and evolution of their atomic constituents. For these predictions to be reliable, it is critical that the simulation has reached convergence, whereby representative sampling of the phase space has been gathered. We show that the commonly used root mean square deviation is an unsuitable convergence descriptor for systems featuring surfaces and interfaces. We then present an effective criterion, embodied in the analysis tool DynDen, based on convergence of the linear partial density of all components in the simulation. With a variety of examples we demonstrate the usage of DynDen for the assessment of convergence, as well as for identification of slow dynamical processes, which can be easily missed with conventional analysis.
DOI: 10.17632/97srt7m5cp.1
title: High-resolution structure and strain comparison of infectious mammalian prions, Kraus et al.

description: This dataset includes image files associated with the manuscript "High-resolution structure and strain comparison of infectious mammalian prions", Kraus et al., Molecular Cell 2021. Corresponding Figure Legends: Fig. 1. EM images and density maps of 263K prion fibrils. (A) Negatively stained transmission EM image (bar = 50 nm). (B) Raw 2D cryo-EM image. Fig. 3. Anchorless RML (aRML) prions have distinct fibril topologies and cross-sectional densities. (A) Negative stain electron micrograph of aRML fibril preparations. Scale bar = 50 nm. (B) Representative micrograph of cryo fibril preparations. Scale bar = 50 nm. Supplemental Fig. 1. 263K PrPSc preparations are protease-resistant, seed-competent, and highly infectious. (A) Gel analysis of two independent hamster 263K purifications. Purified 263K prions from two preparations were subjected to PK digestion (PK+) and used for gel analysis and subsequent silver staining or PrP immunoblotting as indicated. Untreated 263K (PK-) is shown in the first lane. Predominant bands at ~20-32 kDa, or oligomers thereof, comigrated with bands reacting with PrP antibodies in the immunoblot. PK-generated size shift was consistent with cleavages within the N-terminal domain up to ~residue 90, leaving the remaining C-terminal residues intact (Hope et al., 1986; Prusiner et al., 1984). Densitometry of protein-stained gels indicated that the preparations were ~97-98% PrP. (E) Brain tissue from animals inoculated at the highest dose was used for PrP and GFAP immunostaining, and hematoxylin and eosin (H&E) staining. Consistent with the features observed with typical 263K clinical disease, PrP deposition, astrogliosis (GFAP), and spongiform change were observed. Scale bar = 50 µm Supplemental Figure 2. Tomography of 263K prions shows left-handed fibrils and asymmetric decoration with globules. (A) Tomographic slice of a fibril with globules visible on the ends, outlined with white circles in (A’). The globules were spaced at 7-10 nm but could be seen along the entire length of some fibrils (Supplemental Fig. 1A,B & Movies S1-3) and increased overall fibril widths by ~2-4 nm (Supplemental Table 1). Although the nature of these globules remains unclear, they might have been due in part to binding of residual lipids, detergent or other non-PrPSc molecules. (B) Another slice with globules, as marked in (B’). (C,D) Two slices of a 263K fibril without apparent globules. (E-H) Fibrils from 4 different tomograms showing the top, middle, and bottom slices, illustrating the left-handed helix found in &gt;99% of fibrils analyzed by tomography. Scale bars: (A-D) = 25 nm, (E-H) = 50 nm.
DOI: 10.17632/3bs74vf72n.2
title: BetheSF V2: 3-point propagator and additional external potentials

description: In a recent paper (Comput. Phys. Commun. 258 (2021) 107569) we obtained exactly the tagged-particle propagator in a single-file with N particels diffusing in a generic confining potential via the coordinate Bethe-Ansatz. A naïve implementation of this solution requires a non-polynomial algorithm. To speed-up the computation we implemented a more efficient algorithm that exploits the particle exchange-symmetry. In this new version we expand the code-base to allow for the computation of the three point Green's function. The latter is required e.g. in the analysis of the breaking of time-translational invariance. In addition we include the support for two canonical potentials of general interest: one presenting an energy barrier and one featuring an asymmetric potential landscape.
DOI: 10.17632/nc7z59bnf8.1
title: Full data Daily and LPS endocrine in toads

description: Full data for the paper Full data Daily and LPS endocrine in toads published in Chronobiology International
DOI: 10.17632/3p997fsrc6.1
title: Multiple Perspectives with Online EFL Practicum Technology Learning: Case Study on a Cloud

description: This set of supplementary data is related to the article “Multiple Perspectives with Online EFL Practicum Technology Learning: Case Study on a Cloud.” It contains 1) survey data, 2) data collection methods, 3) sample screenshots of field notes, and 4) sample screenshots of online practicum. The participants’ interview content and reflection entries cannot be exposed to the public under the ethics guidelines of National Cheng Kung University Human Research Ethics Committee in Taiwan.
DOI: 10.17632/j43fkg8vjt.1
title: DiffExp, a Mathematica package for computing Feynman integrals in terms of one-dimensional series expansions

description: DiffExp is a Mathematica package for integrating families of Feynman integrals order-by-order in the dimensional regulator from their systems of differential equations, in terms of one-dimensional series expansions along lines in phase-space, which are truncated at a given order in the line parameter. DiffExp is based on the series expansion strategies that were explored in recent literature for the computation of families of Feynman integrals relevant for Higgs plus jet production with full heavy quark mass dependence at next-to-leading order. The main contribution of this paper, and its associated package, is to provide a public implementation of these series expansion methods, which works for any family of integrals for which the user provides a set of differential equations and boundary conditions (and for which the program is not computationally constrained). The main functions of the DiffExp package are discussed, and its use is illustrated by applying it to the three loop equal-mass and unequal-mass banana graph families.
DOI: 10.5281/zenodo.5245098
title: Sarah_Hudson_MSc2021_datafiles_Rcode

description: Data files and Rcode for an MSc dissertation on bumblebee communities in inner London
DOI: 10.5281/zenodo.5245097
title: Sarah_Hudson_MSc2021_datafiles_Rcode

description: Data files and Rcode for an MSc dissertation on bumblebee communities in inner London
DOI: 10.17632/63m34hg3pt.1
title: SpinalJ_example_data_processing_tutorial

description: Video tutorial demonstrating the use of SpinalJ on an example dataset. Raw image data, parameter settings and resulting output files are provided in separate datasets.
DOI: 10.17632/29z57w5989.2
title: How facial aging affects perceived gender: Insights from maximum likelihood conjoint measurement

description: Conjoint measurement was used to investigate the joint influence of facial gender and facial age on perceived gender (Experiment 1) and perceived age (Experiment 2). A set of 25 faces was created, covarying independently five levels of gender (from feminine to masculine) and five levels of age (from young to old). Two independent groups of observers were presented with all possible pairs of faces from this set and compared which member of the pair appeared as more masculine (Experiment 1) or older (Experiment 2). Three nested models of the contribution of gender and age to judgment (i.e., independent, additive, and saturated) were fit to the data using maximum likelihood. The results showed that both gender and age contributed to the perceived gender and age of the faces according to a saturated observer model. In judgments of gender (Experiment 1), female faces were perceived as more masculine as they became older. In judgments of age (Experiment 2), young faces (age 20 and 30) were perceived as older as they became more masculine. Taken together, the results entail that: (a) observers integrate facial gender and age information when judging either of the dimensions, and that (b) cues for femininity and cues for aging are negatively correlated. This correlation exerts stronger influence on female faces, and can explain the success of cosmetics in concealing signs of aging and exaggerating sexually dimorphic features.
DOI: 10.17632/gbws96ft3z.1
title: Fecal Microbial Transplants Combined with Improved Diet Recovers Low Physical Activity Levels Faster than Improved Diet Alone in Mice with Diet Induced Obesity

description: raw metabolomics and behavioral data from manuscript entitled "Fecal Microbial Transplants Combined with Improved Diet Recovers Low Physical Activity Levels Faster than Improved Diet Alone in Mice with Diet Induced Obesity "
DOI: 10.17632/389vfnysrh.1
title: Data for: Designing a Public Engagement Process for Long-Term Urban Park Development Project

description: The Yongsan Park Development Project has been in progress for more than three decades. An online survey of 2,000 respondents was conducted and analyzed to evaluate the current public awareness and ask questions about respondents’ expectations for the next phase of public engagement. The results of this study reveal that 1) a hybrid methodology is needed to effectively approach different age groups; 2) an internet-based open survey can offer new insights into the urban open space project, particularly with the assistance of mobile devices; 3) the survey results will enable us to design a better public participation process that is appropriate for post-pandemic society, in which virtual meetings and socially distanced communications are part of the new norm.
DOI: 10.17632/tstsz84rs6.1
title: Spatial Stem Cell Fate Engineering via Facile Morphogen Localization - Processed data

description: Processed data
DOI: 10.17632/jd8y573s4r.2
title: Data on bond strength of resin cement systems to CAD/CAM resin composite after aging

description: The manufacturer’s recommended primer was applied to the CAD/CAM resin composite. They were bonded using three different types resin cements. Half of all the specimens were tested immediately following 24 hours of immersion in water at 37°C (no thermocylced ; TC 0), and half were subjected to thermocycling 10,000 cycles following 24 hours of immersion in water at 37°C (TC 10,000). The tensile test was used to determine the bond strength in MPa. The fracture surface and mode between resin cement and CAD/CAM resin composite were determined by naked eye and scanning electron microscope observation.
DOI: 10.17632/tj8wd9yrdm.1
title: Estudio de Usuarios Biblioteca UTB

description: González Ramos, Gloria. Estudio de Usuario del Sistema de Bibliotecas UTB / Gloria González. -- Cartagena de Indias : Universidad Tecnológica de Bolívar, 2020. 1. Estudios de Usuarios. 2. Nivel de satisfacción. 3. Servicios Biblioteca.
DOI: 10.17632/pfgg68yd2y.2
title: CYP2B6 and CYP3A4 inhibition

description: Raw and relative data from chemical inhibition of CYP2B6 and CYP3A4 from Vivid bacculosomes. CYP2B6- and CYP3A4-transfected baculosomes from Vivid® CYP450 Blue and Red screening kits, respectively, were obtained from Life Technologies (Carlsbad, CA, USA). Potential inhibitors (and substrates) were screened as described in the Vivid® CYP450 Screening Kits User Guide. Decreased fluorescence due to chemical inhibition was measured on a Gen5 microplate reader (Synergy H1 Hybrid Reader, BioTek, Winooski, Vermont, USA) at 415/460 nm excitation/emission (CYP2B6) and 550/590 excitation/emission (CYP3A4) at automatic read intervals of 50 seconds for a 30-minute duration in kinetic assay mode. Results were exported into Microsoft Excel, where initial fluorescence was subtracted from fluorescence within the linear part of the curve to calculate change over time and averaged between replicates (n = 3-6).
DOI: 10.17632/rp9xt7st56.1
title: Bibliometric study for the creation of projects in the Fototeca Histórica Cartagena de Indias

description: González Ramos, Gloria Estudio basado en bibliografía relacionada con proyectos fotográficos que sirvan de apoyo para la construcción de proyectos en la Fototeca Histórica Cartagena de Indias/Gloria González Ramos. -- Cartagena: Universidad Tecnológica de Bolívar, 2021. 20 páginas : ilustraciones. 1. Proyectos -Fotografías Study based on bibliography related to photographic projects that serve as support for the construction of projects in the Fototeca Histórica Cartagena de Indias. 2021