cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5p2ypn
title: Occurrence Download

description: A dataset containing 179368 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Cornell University Plant Pathology Herbarium"
 ]
}

 The dataset includes 179368 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024103-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.522uzc
title: Occurrence Download

description: A dataset containing 103162 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odocoileus hemionus (Rafinesque, 1817)"
 ]
}

 The dataset includes 103162 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024082-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14853784
title: Dynamics of bacterial recombination in the human gut microbiome - SNV data

description: Compact SNV catalogs of all the QP genomes used in the analysis of Liu & Good (PLOS Bio 2024; doi: 10.1371/journal.pbio.3002472)

Originally generated in the analysis of Garud & Good et al (PLOS Bio 2019; doi: 10.1371/journal.pbio.3000102).

Files includes:



snvs_feather.tar.gz & snvs_parquet.tar.gz: Dataframes saved in either feather or parquet formats to optimize for space and speed.

midas_db_data.tar.gz: reference genome sequences and genome features in the MIDAS database (doi:10.1101/gr.201863.115). Needed for annotating the SNV types (e.g. nonsense, missense, 4D site, etc.)


Python helper functions for handling these catalogs can be found at https://github.com/zhiru-liu/LiuGood-2024-SNVs
DOI: 10.5281/zenodo.14853785
title: Dynamics of bacterial recombination in the human gut microbiome - SNV data

description: Compact SNV catalogs of all the QP genomes used in the analysis of Liu & Good (PLOS Bio 2024; doi: 10.1371/journal.pbio.3002472)

Originally generated in the analysis of Garud & Good et al (PLOS Bio 2019; doi: 10.1371/journal.pbio.3000102).

Files includes:



snvs_feather.tar.gz & snvs_parquet.tar.gz: Dataframes saved in either feather or parquet formats to optimize for space and speed.

midas_db_data.tar.gz: reference genome sequences and genome features in the MIDAS database (doi:10.1101/gr.201863.115). Needed for annotating the SNV types (e.g. nonsense, missense, 4D site, etc.)


Python helper functions for handling these catalogs can be found at https://github.com/zhiru-liu/LiuGood-2024-SNVs
DOI: 10.15468/dl.m2y8h5
title: Occurrence Download

description: A dataset containing 404 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma annulatum Cope, 1886)"
 ]
}

 The dataset includes 404 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024237-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14853814
title: Livreto sobre Segurança nas Internet

description: Este livreto foi desenvolvido como material didático e produção técnica para o evento "Crescer em Movimento", realizado pelo Projeto Re+ação Rio em Petrópolis no dia 14/12/2024. O material aborda o impacto das redes sociais na vida dos jovens, trazendo reflexões sobre segurança digital, privacidade online e o uso consciente das plataformas. Ele foi utilizado no evento como suporte para as atividades, reunindo informações e orientações sobre os desafios e possibilidades do ambiente digital.
DOI: 10.5281/zenodo.14853815
title: Livreto sobre Segurança nas Internet

description: Este livreto foi desenvolvido como material didático e produção técnica para o evento "Crescer em Movimento", realizado pelo Projeto Re+ação Rio em Petrópolis no dia 14/12/2024. O material aborda o impacto das redes sociais na vida dos jovens, trazendo reflexões sobre segurança digital, privacidade online e o uso consciente das plataformas. Ele foi utilizado no evento como suporte para as atividades, reunindo informações e orientações sobre os desafios e possibilidades do ambiente digital.
DOI: 10.15468/dl.wg4kht
title: Occurrence Download

description: A dataset containing 874 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma barbouri Kraus & Petranka, 1989)"
 ]
}

 The dataset includes 874 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024241-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xwzrsf
title: Occurrence Download

description: A dataset containing 52211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is December",
 "StateProvince is Illinois",
 "TaxonKey is Junco hyemalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 52211 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024108-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5w9saj
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma bishopi Goin, 1950)"
 ]
}

 The dataset includes 87 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024242-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3py9xy
title: Occurrence Download

description: A dataset containing 66428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lonicera japonica Thunb.",
 "Year 1970-2025"
 ]
}

 The dataset includes 66428 records from 792 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024162-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrnpyt
title: Occurrence Download

description: A dataset containing 58395 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berberis thunbergii DC.",
 "Year 1970-2025"
 ]
}

 The dataset includes 58395 records from 377 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024171-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2u4fr
title: Occurrence Download

description: A dataset containing 1365 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma californiense Gray, 1853)"
 ]
}

 The dataset includes 1365 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024244-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbeut5
title: Occurrence Download

description: A dataset containing 26209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crotalaria purdieana Senn, Crotalaria semperflorens Vent., Crotalaria toamasinae M.Peltier, Rhynchosia hirta (Andrews) Meikle & Verdc., Cytisus striatus subsp. striatus, Cytisus nigricans subsp. nigricans, Cytisus scoparius subsp. reverchonii (Degen & Hervier) Rivas Goday & Rivas Mart., Dalbergia lanceolaria L.f., Dendrolobium triangulare (Retz.) Schindl., Pongamia pinnata var. pinnata, Brachypterum robustum (Roxb. ex DC.) Dalzell & A.Gibson, Ototropis multiflora (DC.) H.Ohashi & K.Ohashi, Grona heterocarpos subsp. heterocarpos, Dendrolobium triangulare subsp. triangulare, Polhillides velutina subsp. velutina, Grona ovalifolia (Prain) H.Ohashi, K.Ohashi & Tagane, Phyllodium pulchellum (L.) Desv., Tateishia retusa (D.Don) H.Ohashi & K.Ohashi, Macrotyloma tenuiflorum (Micheli) Verdc., Glycine max subsp. soja (Siebold & Zucc.) H.Ohashi, Genista aetnensis subsp. sarda (C.Presl) Fridl., Entada rheedei subsp. rheedei, Erythrina mitis Jacq., Inga laurina (Sw.) Willd., Flemingia semialata Roxb. ex W.T.Aiton, Bocoa prouacensis Aubl., Galactia striata var. villosa (Wight & Arn.) Verdc., Galega africana Mill., Genista numidica subsp. numidica, Gleditsia fera (Lour.) Merr., Vachellia leucophloea var. leucophloea, Gliricidia maculata (Kunth) Steud., Pueraria montana var. montana, Rhynchosia minima var. minima, Sulla carnosa (Desf.) B.H.Choi & H.Ohashi, Indigofera nummulariifolia (L.) Livera ex Alston, Hippocrepis areolata Desv., Indigofera argentea Burm.f., Indigofera compressa Lam., Indigofera hendecaphylla var. hendecaphylla, Lathyrus gorgoni Parl., Lotus castellanus Boiss. & Reut., Lotus pedunculatus subsp. granadensis (Chrtková) Molero Mesa & Pérez Raya, Lotus halophilus Boiss. & Spruner, Lupinus arboreus var. arboreus, Medicago lessingii Fisch. & C.A.Mey. ex Kar., Medicago arborea subsp. arborea, Medicago astroites (Fisch. & C.A.Mey.) Trautv., Medicago globosa C.Presl, Medicago phrygia (Boiss. & Balansa) E.Small)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 26209 records from 574 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019655-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16893195
title: Utilizing Cactus Pear Pruning Residuals as Sustainable Growing Media for Containerized Basil (Ocimum basilicum L.) Cultivation

description: This dataset was obtained from the study conducted to assess the suitability of recycled organic substrates derived from increasing amounts of cactus pear pruning waste as a growing medium for basil.
DOI: 10.5281/zenodo.16893196
title: Utilizing Cactus Pear Pruning Residuals as Sustainable Growing Media for Containerized Basil (Ocimum basilicum L.) Cultivation

description: This dataset was obtained from the study conducted to assess the suitability of recycled organic substrates derived from increasing amounts of cactus pear pruning waste as a growing medium for basil.
DOI: 10.15468/dl.xjxmh5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria nana",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033546-250920141307145/datasets/export for details.
DOI: 10.15468/dl.nfvewh
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria nana",
 "Country is Madagascar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033547-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbyv3x
title: Occurrence Download

description: A dataset containing 855030 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "Geometry POLYGON((5.63629 51.9445,5.70061 51.9445,5.70061 51.98718,5.63629 51.98718,5.63629 51.9445))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2015-2025"
 ]
}

 The dataset includes 855030 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033478-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7wg4gu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pternistis swierstrai",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033549-250920141307145/datasets/export for details.
DOI: 10.15468/dl.dgwru8
title: Occurrence Download

description: A dataset containing 28347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.2.69_2",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 28347 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033550-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.up79e5
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria umbellata",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033551-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/4s1og9
title: Replication Data for: Unequal Competence? Why Criminal Justice Reformers Are Disadvantaged in Local Elections

description: Contains data and Stata code for replicating figures and tables in paper and appendix.
DOI: 10.15468/dl.yarey3
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria umbellata",
 "Country is Madagascar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 169 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033552-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5akzu
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria umbellata",
 "Country is Zimbabwe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033553-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wh56e
title: Occurrence Download

description: A dataset containing 935 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Symplocos setchuensis"
 ]
}

 The dataset includes 935 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033554-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrjqhe
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "PublishingOrg is one of (7a079928-aee9-418a-b083-6152d01c78d6, 30ff48bd-4dd1-429d-a5a5-348c8e5fbfb1, b6d09100-919d-4026-b35b-22be3dae7156, ad3f9c5f-5021-45a3-a7c4-3e64895f6f79, 0bad0631-0693-41fa-afd5-54df0120c509, cccff716-2694-4209-9f9e-2f7a484465a0, c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f, 58c7e325-82fc-446d-9406-851b4d357db7, 5a45153b-bdf9-44ae-b7a7-e3261896540b)",
 "TaxonKey is Siproeta epaphus"
 ]
}

 The dataset includes 54 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033555-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.huuar9
title: Occurrence Download

description: A dataset containing 7076556 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Great Backyard Bird Count"
 ]
}

 The dataset includes 7076556 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033538-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnzf72
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pternistis ahantensis",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033556-250920141307145/datasets/export for details.
DOI: 10.15468/dl.r3raut
title: Occurrence Download

description: A dataset listing the 40196 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is BEL.2_1",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 40196 records were derived from 740 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033532-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17882/105381
title: Census of Marine Malacofauna of the Italian Coasts

description: The census of the Italian marine malacofauna took shape in 1982 by a group of researchers: Daniele Bedulli, Bruno Dell'Angelo, Piero Piani and Gianni Spada with a publication in the Bollettino di Malacologia (Bedulli D., Dell'Angelo B., Piani P., Spada G. 1982. Project for the census of the Italian marine malacofauna. Bollettino Malacologico, 18, 85-94). Subsequently, Filippo Bassignani, Vincenzo Iacono and Bruno Sabelli collaborated on the project, as well as 93 collectors.
The Census of the Italian Marine Malacofauna was a research project by the S.I.M. (Italian Society of Malacology) coordinated by Prof. D. Bedulli of the Department of Evolutionary and Functional Biology of the University of Parma. The project was conceived to increase and organize knowledge on the distribution of marine molluscs of the Italian coasts. This research was necessary because knowledge on the biogeography of the Mediterranean was quantitatively scarce and highlighted a lack of biogeographic data. The aim of the research was to create a database of marine molluscs present on the Italian coasts and their density. Each piece of data (presence and density of a species) is completed by some environmental parameters (e.g. depth, environment, type of substrate, etc.). The main objective of this census was to study the qualitative composition of the coastal malacocenoses of the Italian peninsula and to determine the biogeographic distribution patterns of the different mollusc species, to identify the Lessepsian migrations and the anthropochoric introductions.The data were obtained through a coordinated system of collectors, as well as using the results of various campaigns conducted by research institutions such as: Universities, ENEA, etc. The data collected were checked by SIM "trustees" especially with regard to the systematics.
These data come from the old ENEA database, managed by the S. Teresa Centre of ENEA, which collected the data of The Census of the Italian Marine Malacofauna.
DOI: 10.5281/zenodo.17235949
title: Python for Bioimage Analysis Example Dataset

description: HeLa cell confocal microscopy dataset (3-channel Z-stack, .czi)

Short description:

This dataset contains a confocal laser scanning microscopy image acquired on a Zeiss LSM 880 with AxioObserver microscope using a Plan-Apochromat 40x/1.3 Oil DIC UV-IR M27 objective. The sample consisted of HeLa cells stained with multiple fluorophores and mounted in prolong diamond.

The .czi file includes a 3-channel fluorescence Z-stack (14 optical sections, 512 × 512 pixels per plane) with a voxel size of approximately 0.415 µm × 0.415 µm × 1 µm. Acquisition was performed in laser scanning confocal mode, with oil immersion and epifluorescence detection.

Channels and dyes:



Channel 1 – Alexa Fluor 568, mitochondria (anti-TOM20 primary antibody).

Channel 2 – Alexa Fluor 488, microtubules (anti-tubulin primary antibody).

Channel 3 – DAPI, nuclear staining.


The dataset is meant to be used for training, benchmarking, and teaching in bioimage analysis, for tasks such as 3D cell segmentation and fluorescence quantification.

Image specifications:





File format: Zeiss CZI




Image dimensions: 512 × 512 × 14 voxels


Regions of interest: 4 



Pixel type: 16-bit unsigned integer (12 effective bits per pixel)




Channels: 3 fluorescence channels




Timepoints: 1




Voxel size: 0.415 µm (X, Y), 1.0 µm (Z)
DOI: 10.5281/zenodo.17235948
title: Python for Bioimage Analysis Example Dataset

description: HeLa cell confocal microscopy dataset (3-channel Z-stack, .czi)

Short description:

This dataset contains a confocal laser scanning microscopy image acquired on a Zeiss LSM 880 with AxioObserver microscope using a Plan-Apochromat 40x/1.3 Oil DIC UV-IR M27 objective. The sample consisted of HeLa cells stained with multiple fluorophores and mounted in prolong diamond.

The .czi file includes a 3-channel fluorescence Z-stack (14 optical sections, 512 × 512 pixels per plane) with a voxel size of approximately 0.415 µm × 0.415 µm × 1 µm. Acquisition was performed in laser scanning confocal mode, with oil immersion and epifluorescence detection.

Channels and dyes:



Channel 1 – Alexa Fluor 568, mitochondria (anti-TOM20 primary antibody).

Channel 2 – Alexa Fluor 488, microtubules (anti-tubulin primary antibody).

Channel 3 – DAPI, nuclear staining.


The dataset is meant to be used for training, benchmarking, and teaching in bioimage analysis, for tasks such as 3D cell segmentation and fluorescence quantification.

Image specifications:





File format: Zeiss CZI




Image dimensions: 512 × 512 × 14 voxels


Regions of interest: 4 



Pixel type: 16-bit unsigned integer (12 effective bits per pixel)




Channels: 3 fluorescence channels




Timepoints: 1




Voxel size: 0.415 µm (X, Y), 1.0 µm (Z)
DOI: 10.15151/esrf-es-2225267755
title: The SAXS/SANS platform a the Partnership for Structural Biology

description: This proposal seeks time on BM29 to allow joint SAXS and SANS measurements to be carried out as part of the PSB SAXS/SANS platform. The BAG services this user-platform by allowing the allocation of SAXS beamtime in connection to SANS measurements so that full advantage of co-location of SAXS and SANS facilities on the EPN can be provided to users. The scientific case for each joint request is evaluated by the ILL review committees of its Scientific Council and the allocation of time for successful proposals coordinated between the ILL and ESRF user offices.
DOI: 10.15468/dl.rwvg77
title: Occurrence Download

description: A dataset containing 1224 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Betula albosinensis"
 ]
}

 The dataset includes 1224 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033558-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.