cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/9rbyzvt8pb
title: SAFB restricts contact domain boundaries associated with L1 chimeric transcription

description: Long interspersed element-1 (LINE-1 or L1) comprises 17% of the human genome, continuously generates genetic variations, and cause disease in certain cases. However, the regulation and function of L1 remain poorly understood. Here, we uncover that L1 can enrich RNA polymerase IIs (Pol IIs), express L1 chimeric transcripts and create contact domain boundaries. This impact of L1 is restricted by a nuclear matrix protein Scaffold Attachment Factor B (SAFB) that recognizes transcriptionally active L1s by binding L1 transcripts to inhibit Pol II enrichment and reduce L1 transcription. Acute inhibition of Pol II transcription abolishes the domain boundaries associated with L1 chimeric transcripts, indicating a transcription-dependent mechanism. Deleting L1 impairs domain boundary formation, and L1 insertions during evolution have introduced species-specific domain boundaries. Our data show that L1 can create Pol II enriched regions that alter genome organization, and that SAFB regulates L1 and Pol II activity to preserve gene regulation.
DOI: 10.17632/wpn92s3m7z
title: the whole composition space

description: the whole composition space of Co-Ni-Cr-Mo-V system
DOI: 10.17632/cc3z7bdtmh
title: LINF_360044200

description: phytoene synthase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/db9m4jswgy
title: Data for: The use of Atlantic hagfish (Myxine glutinosa) as a bioindicator species for studies on effects of dumped chemical warfare agents in the Skagerrak. 2. Biochemical biomarkers

description: Biochemical biomarker measurements of hagfish muscle and liver tissue.
DOI: 10.17632/hss8z5ksbk
title: Simulated waveforms for validation of seismic velocity models in southern California

description: The dataset includes synthetic waveforms used in the paper "Validation of seismic velocity models in southern California with full-waveform simulations, GJI, https://doi.org/10.1093/gji/ggab534". Please refer to the paper for further information regarding its usage.
DOI: 10.17632/kwb5hhfrpc
title: Supplementary Material

description: Supplementary Material
DOI: 10.17632/mx72t95fzc
title: LDHU3_14.1350

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/gybxsvxjf7
title: LINF_360080600

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/37k82fyj6h
title: Custo-efetividade do Paxlovid contra infecção de COVID-19 em pacientes idosos e imunossurpimidos [Cost-effectiveness of Paxlovid against COVID-19 infection in elderly and immunosuppressed patients]

description: [This is the repository of versions of the complete model of[ Cost-effectiveness of Paxlovid against COVID-19 infection in elderly and immunosuppressed patients builded by the Center for the Evaluation of Health Technologies of the National Institute of Cardiology (NATS-INC) aiming to support the reimbursement discussions of the National Commission for Incorporating Technology into SUS (Conitec)]. The model was built in TreeAgePro 2022.
DOI: 10.17632/8gbtpdpwty
title: ESTUDO E PROTOTIPAGEM DE MOVIMENTOS DE ALETAS AUTOCONTROLADAS PARA MELHORIA DA ESTABILIDADE DE FOGUETES

description: Anais do II Simpósio Gaúcho de Engenharia Aeroespacial e Mecânica, UFSM
Santa Maria, RS, 24 a 26 de outubro de 2023
DOI: 10.17632/cjrv9cmg6v
title: Supplementary materials of the article: "Exploring the Impact of Health on Adolescent Dancers' Achievements: A Survey Study", Qian, Lucy

description: Supplementary materials of the article: "Exploring the Impact of Health on Adolescent Dancers' Achievements: A Survey Study"
DOI: 10.17632/hznwrds64w
title: LINF_360007000

description: elongation factor 2 | eEF2
Leishmania infantum (strain JPCM5)
DOI: 10.17632/stwm3b4jsf
title: Locus-specific proteome decoding reveals Fpt1 as a chromatin-associated negative regulator of RNA Polymerase III assembly

description: Figure 3 is aimed to study the characteristics of Fpt1. To determine whether increased Fpt1 binding to tDNAs during repressive conditions was caused by increased Fpt1 protein expression, we measured global cellular protein levels of Fpt1-TAP in response to changing nutrient conditions. Immunoblotting showed that increased Fpt1-TAP occupancy at tRNA genes was accompanied by an increase in Fpt1-TAP protein levels upon a switch to repressive conditions. To further explore whether recruitment of Fpt1 is regulated by expression levels, we generated strains in which Fpt1-TAP is overexpressed by a strong TDH3 promoter at the native FPT1 locus. This caused a 20-fold increase in Fpt1 protein levels. We also determined the cellular localization of Fpt1 in nutrient-rich and repressive conditions. GFP-tagged Fpt1 localized to the nucleus in all tested conditions and showed only a modest increase in nuclear enrichment in repressive conditions. In figure 6 we aimed to determine how Fpt1 occupancy depends on other members of the RNAPIII transcription machinery, and to get insights into Fpt1’s mechanism. We treated cells for 30 minutes with 1,10-phenanthroline (PH). Rpo31-TAP and Brf1-TAP occupancy and protein levels decreased upon treatment with PH. In agreement with the competitive model between RNAPIII and TFIIIC, TFIIIC (Tfc3-TAP) binding increased upon treatment with PH, albeit protein levels were decreased. Similar to TFIIIC, occupancy of Fpt1 increased in PH treated cells. Fpt1-TAP protein levels also increased, corroborating the observed increase of Fpt1 protein levels in repressive conditions. To explore the dependency of Fpt1 on the RNAPIII transcription machinery in more detail, we used the anchor away system to conditionally deplete proteins from the nucleus and check whether Fpt1 binding to tRNA genes is perturbed. The anchor away system was validated using microscopy. Immunoblotting showed that effects on Fpt1 binding were not caused by altered Fpt1-TAP protein levels.
DOI: 10.17632/2jjnr5px3w
title: LINF_290012400

description: peroxin 7 | PEX7
Leishmania infantum (strain JPCM5)
DOI: 10.17632/mtm2s3hksp
title: Detecting epithelial-mesenchymal transition signaling molecules in cervical epithelial cells aids in the early diagnosis of cervical lesions

description: Raw data of "Detecting epithelial-mesenchymal transition signaling molecules in cervical epithelial cells aids in the early diagnosis of cervical lesions"
DOI: 10.17632/8dxpvv7syf
title: Raw data-Nano-bio interface between human plasma and niosomes with different formulations indicates protein corona patterns for nanoparticle cell targeting and uptake

description: raw data of the research work
DOI: 10.17632/scx83skpmg
title: Data for: "The potential of roadside verges as insect habitat: road salt has few effects on monarch butterfly performance and migration"

description: STUDY ABSTRACT: Roadside habitat has been touted as a conservation opportunity for insect pollinators, including the declining monarch butterfly. The spectacular monarch migration is under threat from the loss of habitat and the decline of their milkweed host plants. In the northern part of their range, roadsides could potentially produce millions of monarchs annually due to high densities of milkweed, however roadside milkweed can accumulate chemicals from roads, such as sodium from road salt. Controlled lab studies have shown mixed effects of sodium on monarch development: small increases can be beneficial as sodium is an important micronutrient in brain and muscle development, but large increases can sometimes decrease survival. It is unclear how dietary sodium affects performance in ecologically relevant conditions, and the migration itself. In this experiment, we raised monarchs outdoors, in migration-inducing conditions, on milkweed sprayed with three levels of sodium chloride. We released 2464 tagged monarchs and held an additional 246 for further lab assays. While our recovery rates to the wintering grounds were low (N = 7 individuals), individuals from all three sodium chloride treatments made it to Mexico. Butterflies reared on control milkweed and low salt concentrated sodium in their tissues, while those on high salt diets excreted sodium, suggesting levels were above a physiological optimum. There were no effects of treatment on wing coloration, survival, body size, immunity, or parasite prevalence. Taken together, our results suggest that monarchs are robust to levels of sodium in milkweeds found along roadsides, which is promising with respect to the value of roadside habitat for monarchs and other declining insects.
DOI: 10.17632/52s2th2hmg
title: Supplementary Appendix - Contribution of Socioeconomic Risk Factors within a Diverse Mycosis Fungoides Cohort from Detroit, MI

description: Supplementary Appendix for "Contribution of Socioeconomic Risk Factors within a Diverse Mycosis Fungoides Cohort from Detroit, MI"
DOI: 10.17632/b8n45m2pzh
title: Tectonic anatomy reveals the Chinese Altai-Kuerti-Dulate arc amalgamation in the southern Altaids

description: supporting information for manuscript "Tectonic anatomy reveals the Chinese Altai-Kuerti-Dulate arc amalgamation in the southern Altaids"
DOI: 10.17632/s24bb5p42t
title: The Efficacy of a Metacognitive Training Program in Amnestic Mild Cognitive Impairment: A 6-Month Follow-Up Random-ized Controlled Trial

description: This study was conducted in response to the increasing prevalence of Alzheimer’s disease (AD) dementia and the significant risk faced by individuals with amnestic mild cognitive impairment with multiple-domain deficits (aMCI-md). Given the promising effects of MTPs, the primary aim of this study was to further explore their impact by assessing the maintenance of their benefits. Thus, 45 participants were randomly allocated in two groups: the Experimental group (n = 22), which received the metacognitive training program (MTP), and the Control group (n = 23) that re-ceived the cognitive exercises program (CEP). The training programs—the MTP and the CEP—included 10 individual sessions of a one-hour duration and took place once per week. To test the efficacy of the MTP, cognitive and metacognitive outcomes were compared between two groups—Experimental (EG) and Control (CG)—at four distinct time points: before–after–3 months–6 months after intervention. Based on this study’s findings, the positive effects of the MTP were evident over a six-month period. Specifically, already three months post-training, the CG be-gan to show a decline in training-related gains. In contrast, the EG’s performance consistently im-proved, highlighting the superior efficacy of the MTP. Gains attributed to the MTP were detected in cognitive measures: cognitive flexibility and immediate visual recall, as well as in metacognitive measures: metacognitive control, improved metacognitive beliefs of attention, and an increased use of cognitive strategies. In conclusion, the results demonstrated the sustained effects of the MTP in cognitive and metacognitive measures over a period of six months, providing novel insight into the application and efficacy of the MTP in individuals with MCI.
DOI: 10.17632/6jbknfy83z
title: Data for: Male responses suggest both evolutionary conservation and rapid change in chemical cues of female widow spiders

description: The spreadsheet file containing the data for this paper is spread in 2 excel sheets: 1st excel sheet includes the information and data for the airborne pheromone experiment. We include the treatment groups, the first, second and final male choice for the control and heterospecific experiment for each treatment group, as well as the time spend in each cage in minutes (decimal numbers represent minutes and seconds given in fractions of minutes) 2nd excel sheet includes the information and data for the contact pheromone experiment. For each treatment we provide the time in minutes that the males were moving on the contact pheromones extracts.
DOI: 10.17632/gfkz88rwmf
title: Pisciarelli_ERT2021

description: raw data
DOI: 10.17632/2sy63ynf77
title: Dataset and Codes of "Spatial estimation of hydrogeological variation by integrating multi-fidelity data using filtered kriging"

description: Data for submission to Mathematical Geosciences.
DOI: 10.17632/3dphj27952
title: Clumped Isotope Hackberry Dataset-11-28-22

description: Carbon, oxygen, and clumped isotope analyses of modern hackberries collected across North America
DOI: 10.17632/c27c5nfky9
title: WSOC_campaign_data_GRL

description: Our understanding of spatio-temporal variability of water-soluble organic
constituents and their mass transport/transformation in cryosphere is very limited.
Here, we present results from a suite of comprehensive field campaigns (which were
logistically very challenging) over Tibetan Plateau. Water sampling from various
water bodies was collected which spanned over 300-500 km of cryosphere region and
2-6 km in elevation. Analysis of the samples illustrated a significant altitude
dependence of organic matter abundance in water bodies over the wide eastern TP. To
the best of our knowledge this is the first time, the elevational gradient of aqueous
OM over high mountains of Asia is observed, which makes this study very
interesting.
DOI: 10.17632/5p378zbjkj
title: De Novo Simple Sequence Repeats (SSRs) Marker from Next-Generation Sequencing (NGS) Data of Durio testudinarius Becc. (Turtle Durian)

description: These data are containing SSR markers filtered from Durio testudinarius whole genome sequencing assembly.
DOI: 10.17632/hx34p92sxg
title: Gaze data and Webgazer Visualiser

description: In our research, we took advantage of consumer webcams and open-source software to gather data from a larger group of students, demonstrating high scalability and cost-effectiveness of this approach. We aimed to study the differences in reading behavior between students reading regular text with illustrations and the same text with highlighted important terms. The subjects, first-year university students, filled out a questionnaire and introductory test in order to determine their knowledge level. A total of 80 full-time students were directly involved in the experiment. The students were subsequently randomly divided into two equally sized groups - the experimental group, which was enrolled in a variant of the e-course containing chapters with visually distinguished important terms, and the control group, with the same subchapters but without the highlighted terms. A total of 68 students took part in both measurements; however, only 59 achieved serviceable results from the first measurement and 61 from the second one. The data was analyzed both qualitatively using visualizations and quantitatively using statistical measures on the data and test results. We haven’t observed a significant difference between the experimental and control group in neither the gaze patterns, not their test results. We did however find a significant gaze pattern differences between the higher scoring students and the failing students.
The first takeaway is the feasibility to conduct larger scale eye-tracking experiments. Most of the studies in this area use very small population samples due to the time and financial constraints of the methods using specialized eye-tracking hardware. Our method is scalable, as it relies on low-end hardware and outsources the recording to the students’ devices. The second takeaway is that although eye-tracking may not be useful to fine-tune text already optimized for readability, it may be a useful tool to identify and help struggling learners.
DOI: 10.17632/p8dprc9kbd
title: LDHU3_07.0230

description: Protein kinase; Leishmania donovani (HU3 strain)
DOI: 10.17632/sz527r8yyb
title: PCR results of cervical microbiome of women undergoing FET

description: By PCR, we test the cervical microbiome of 231 women undergoing FET in the day of endometrial transformation
DOI: 10.17632/hxhxdx4mxd
title: Data for: Donning Gloves Before Surgical Gown Eliminates Sleeve Contamination

description: Donning Gloves Before Surgical Gown Eliminates Sleeve Contamination
DOI: 10.17632/pt2zzysbvx
title: LINF_040011100

description: hypothetical protein - conserved; Leishmania infantum
DOI: 10.17632/nykjyfwbtf
title: LINF_160007700

description: Alpha/beta hydrolase domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/79vk8sw8kf
title: Visual noise from caustic flicker does not affect the hunting success of cuttlefish

description: Data of an experiment investigating whether the hunting success and behaviour of the common cuttlefish Sepia officinalis if affected by the presence of visual noise. A key to the variable names is contained in the readme file.
DOI: 10.17632/fyr78k4yt6
title: LINF_240007800

description: hypothetical protein - conserved
Leishmania infantum (JPCM5)
DOI: 10.17632/jghjcrktwp
title: Determinants of Spike Infectivity, Processing and Neutralization  in SARS-CoV-2 Omicron subvariants BA.1 and BA.2

description: Primary data: Determinants of Spike infectivity, processing, and neutralization in SARS-CoV-2 Omicron subvariants BA.1 and BA.2 Pastorio et al. Cell Host Microbe (2022), https://doi.org/10.1016/j.chom.2022.07.006
DOI: 10.17632/rm775zb8v5
title: Confrontation Naming in older adults

description: The data set consists of the raw data and coding details for the meta-analytic study on confrontation naming in older adults. Note that the meta-analytic study did not produce new data but extracted and synthesized the data from 35 primary empirical studies.
DOI: 10.15468/dl.2exemu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phoca ursina Linnaeus, 1758",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025514-250127130748423/datasets/export for details.
DOI: 10.17632/59b8crgvbm
title: Supplemental Material - Association between skin-related quality of life and race in patients with moderate-to-severe hidradenitis suppurativa: Analysis of two phase 3 clinical trials

description: Supplemental Material - Association between skin-related quality of life and race in patients with moderate-to-severe hidradenitis suppurativa: Analysis of two phase 3 clinical trials

Authors: Bria Midgette, BS, Andrew Strunk, MA, Amit Garg, MD
DOI: 10.17632/zkt35cgnfs
title: Zhao et al_Molecular Cell_Figure S5A
DOI: 10.17632/27r2zzyh2t
title: The identity of the individual plants used in a crop rotation affects soil biology more than the diversity of the rotation

description: In this study, the soil microbial community structure and biomass, by means of phospholipid fatty acid (PLFA) analysis, and the abundance of microfauna (nematodes), mesofauna (Collembola and mites), and macrofauna (earthworms) were assessed at three levels of crop rotational diversity (Simple, Moderate and Diverse).
DOI: 10.17632/gttfn639ns
title: LDHU3_15.1770

description: Mitoribosomal protein mS63; Leishmania donovani (HU3 strain)
DOI: 10.17632/939547xs63
title: Active control of electro-visco-fingering in Hele-Shaw cells using Maxwell stress

description: Representative interfacial evolutions of electro-visco-fingering.
DOI: 10.17632/xhhprn9kh8
title: LINF_140016700

description: COQ9 Leishmania infantum (strain JPCM5)
DOI: 10.17632/zvpzvjfzfr
title: Serifoglu  J neurogenet

description: Paper submitted to J Neurogenetics, 2022. titled: TERT distal promoter GC islands are critical for telomerase and together with DNMT3B silencing may serve as a senescence-inducing agent in gliomas.
DOI: 10.17632/gcsdx4xnsd
title: STL models of heads and nasal region of Ariopsis felis

description: STL models of heads and nasal region of Ariopsis felis:

Model 1A Partial Head
Model 1A Right Nasal Region
Model 1B
Model 1C (must be reduced by factor of 0.68152 to get life-sized model used in CFD simulations)
Model 2A Head
Model 2A Barbels
Model 2B
Nasal chamber floor
Nasal chamber roof
Nasal chamber volume
DOI: 10.17632/p5t399jycv
title: Body Site Distribution of Pediatric-Onset Morphea and Association with Extracutaneous Manifestations

description: Supplemental tables for manuscript published in the Journal of the American Academy of Dermatology.
DOI: 10.17632/3j78c6d74n
title: LINF_340048400

description: Ubiquitin carboxyl-terminal hydrolase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/j7sfr8w6ts
title: Persistent and Transitory Components of Firm Characteristics 4

description: Part 4 of Dataset for replicating Persistent and Transitory Components of Firm Characteristics
DOI: 10.17632/7xgwbsvcmt
title: Cultivated land pressure gravity model construction, spatial correlation network analysis, and driving factor regression analysis data

description: This dataset includes the results obtained from the analysis of the characteristics of the spatial correlation network of cultivated land pressure using the social network analysis method, including overall characteristics, individual characteristics, and block model analysis, on the basis of constructing the gravitational model of cultivated land pressure and calculating the gravitational value from the arable land pressure index of the Chengdu-Chongqing Twin City Economic Circle, the GDP of the prefectural-level municipalities, the permanent resident population, and the geographic distance, and then constructing the matrix on the gravitational data. In addition, the dataset includes the results of the regression analysis of the driving factors using the QAP regression analysis method based on the construction of the driving model of the spatial correlation network of cultivated land pressure and the selection of driving factors.
DOI: 10.17632/m43j77n62r
title: Bonavita et al. JTB

description: The dataset corresponding to the manuscript by Bonavita et al. on thermal ecology parameters of Liolaemus absconditus and Liolaemus tandiliensis.
DOI: 10.17632/y2nr4gzsjt
title: Data for 'Small effects of electric field on motor cortical excitability changes following anodal transcranial direct current stimulation'

description: This dataset contains the measured and calculated data collected and used for the following article in MATLAB format.
Example scripts for analysing and visualising the data are included.

Reference:
Ilkka Laakso, Keisuke Tani, Jose Gomez-Tames, Akimasa Hirata, Satoshi Tanaka
Small effects of electric field on motor cortical excitability following anodal tDCS
iScience, 27 (2024), 108967, DOI: https://doi.org/10.1016/j.isci.2024.108967

See README.txt for details.
DOI: 10.17632/9f5w3zws2b
title: Supplemental Material for Article "Atopic Dermatitis is Associated with Cardiovascular Risk Factors in Pediatric Patients: A Systematic Review and Meta-Analysis"

description: Supplemental Material for Article "Atopic Dermatitis is Associated with Cardiovascular Risk Factors in Pediatric Patients: A Systematic Review and Meta-Analysis"
DOI: 10.17632/ctr8g6gtny
title: Concentrations of Delta 9-tetrahydrocannabinol (THC) in oral fluid at different time points after use

description: This data is a meta-analysis of 7 studies where subjects were administered natural cannabis in a controlled setting, with Oral Fluid (OF) drug tests showing the exact THC concentrations in OF for each subject for at least two time points after cannabis administration using confirmatory methods. Summary statistics showed OF THC concentrations by time after use were highly dispersed at every time point, positively skewed, and declined over time. Many positive THC OF concentrations were found after 24-hours in one study, but most studies did not conduct observations past 24 hours. In a multivariate analysis, we found that increased dose, increased frequency of cannabis use, and inhaled (versus ingested) cannabis were statistically related to higher OF THC concentrations. OF collection device (i.e. intercept DOA versus expectorant) and sex (i.e. male versus female) were only significant in a bivariate analysis.
DOI: 10.17632/mgzkp24hpg
title: data of "pure risk, agency conflict, and hedging"

description: we provide all MATLAB codes of the paper "pure risk, agency conflict, and hedging".