cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.84h07s1/2
title: Weight and growth data of the soybean looper

description: This file collection data for the genotype of the host plant, the total weight of the the loopers in the beginning of the experiment (Before), the number of loopers in the beginning (InitialLooperNumber), average weight of the loopers (BeforeIndiv), the final looper total weight (After), the number of alive loopers found (FinalLooperNumber), the final average weight of the loopers (AfterIndiv), the number of days the experiment ran (Days), the region of the host plant (Region). It also includes calculated data columns for the estimated dry weight of the average looper before (estInitDry) and after (estFinDry) the experiment, the mean daily dry weight (dailyMeanDry), and the calculated RGR (GrowthRate).
DOI: 10.5061/dryad.84h07s1/3
title: Subset of host plant genotypes that were used in both the choice assay and no choice assay

description: This file contains the hostplant genotype and its range (Type), how much of its tissue was consumed (proportion eaten), whether it is the choice assay or no choice assay value (group), the proportion consumed of the total amount of tissue available (proprotionTotEat), and a column where we averaged by the number of days of the assay (propStd). This final column was when we considered whether to compare the amount eaten in one day for the choice assay to the day average in the choice assay.
DOI: 10.5061/dryad.84h07s1/4
title: Unprocessed preference data

description: This is the raw data that includes some lightly processed columns at the end. The tab that says controls is the tissue used to estimate weight loss due to water loss in the tissue. the Sheet1 tab has the raw weights for the choice pairs, and columns for those values standardized for water loss. The remaining columns were just piloted methods to analyze data. The remaining tabs were for methods of analysis that were not included in the final manuscript.
DOI: 10.5061/dryad.84h07s1/5
title: R script used to analyze data

description: This is the R code that was used for data analysis.
DOI: 10.5061/dryad.8tp0900/1
title: Simulation codes in Fortran
DOI: 10.5061/dryad.902cq26/1
title: Fernandes Neto et al. 2019. Species_functional-traits

description: That file is related with all functional trati data collected on this work. Original file is on excel and data was used on R program. The abbreviations descriptions are on a spreadsheet inside on the file.
DOI: 10.5061/dryad.902cq26/2
title: Fernandes Neto et al. 2019. Plots_relative-dominance

description: That data is related with the values from relative dominance of the species and comes from Pioneiras Project data. Therefore, it is a data processed from census of secondary succession on these two types of land-use (pastures and clear cut) by the Pioneiras Project.
DOI: 10.5061/dryad.b63202v/4
title: Data for Publication - Clay model detection - Linear mixed effects

description: Data collected in the field from human participants
DOI: 10.5061/dryad.bd157bv/1
title: Herbicide, nutrient, and suspended sediment data for streams in the Devils Icebox and Hunters Caves

description: The data set contains concentration, load, and daily discharge data for Devils Icebox Cave and Hunters Cave from 1999 to 2002. The data are available in Microsoft Excel 2010 format. Sheet 1 (Cave Streams Metadata) contains supporting information regarding the length of record, site locations, parameters measured, parameter units, method detection limits, describes the meaning of zero and blank cells, and briefly describes unit area load computations. Sheet 2 (Devils Icebox Concentration Data) contains concentration data from all samples collected from 1999 to 2002 at the Devils Icebox site for 12 analytes and two computed nutrient parameters. Sheet 3 (Devils Icebox SS Conc Data) contains 15-minute suspended sediment (SS) concentrations estimated from turbidity sensor data for the Devils Icebox site. Sheet 4 (Devils Icebox Load & Discharge Data) contains daily data for discharge, load, and unit area loads for the Devils Icebox site. Sheet 5 (Hunters Cave Concentration Data) contains concentration data from all samples collected from 1999 to 2002 at the Hunters Cave site for 12 analytes and two computed nutrient parameters. Sheet 6 (Hunters Cave SS Conc Data) contains 15-minute SS concentrations estimated from turbidity sensor data for the Hunters Cave site. Sheet 7 (Hunters Cave Load & Discharge Data) contains daily data for discharge, load, and unit area loads for the Hunters Cave site.
DOI: 10.5061/dryad.bs8313h/1
title: Data used to model prevalence of the hypersymbiont

description: Data collected in the field and used to model prevalence of the hypersymbiotic ciliate Lagenophrys discoidea, which attaches to an ostracod that is itself ectosymbiotic on crayfish.
DOI: 10.5061/dryad.bs8313h/2
title: Data used to model abundance of the hypersymbiont

description: Data collected in the field and used to model abundance of the hypersymbiotic ciliate Lagenophrys discoidea, which attaches to an ostracod that is itself ectosymbiotic on crayfish
DOI: 10.5061/dryad.c0qt85m/3
title: SandGobiescalibratedphylogeny

description: Calibrated phylogeny of reduced set of sand gobies
DOI: 10.5061/dryad.c0qt85m/4
title: SandgobieslandmarksFixedFresh

description: Landmark data for six species of sand gobies, paired fixed and fresh specimens
DOI: 10.5061/dryad.c0qt85m/5
title: Sandgobiesfixedlandmarks

description: Landmark data for complete dataset of fixed sand goby specimens
DOI: 10.5061/dryad.f7b0t28/1
title: Shortfin mako shark Argos locations

description: Satellite location data prepared for state-space model analysis.
DOI: 10.5061/dryad.g45n6v3/1
title: T. cordata Nectar LC-MS Analysis 2016, 2017

description: This file contains the sample IDs and original data from LC-MS/MS analysis of Tilia cordata nectar collected in 2016 and 2017.
DOI: 10.5061/dryad.g45n6v3/2
title: B. vosnesenskii Thoracic Muscle LC-MS Analysis 2016, 2017

description: This file contains sample IDs and original data for untargeted liquid chromatography of bumble bee thoracic muscle conducted in 2016 and 2017.
DOI: 10.5061/dryad.g45n6v3/3
title: Nectar, bee muscle NMR analysis 2017

description: This file contains the results of the subset of bee thoracic muscle and linden nectar analysis conducted with nuclear magnetic resonance in 2017.
DOI: 10.5061/dryad.g45n6v3/4
title: T.cordata_nectar_targeted_trigonelline_2017

description: This file contains the results of a targeted search for the alkaloid trigonelline in T. cordata nectar using LC-MS/MS.
DOI: 10.5061/dryad.hk0tf00/1
title: Rock mechanics parameters

description: Rock mechanics parameters for simulation in the paper.
DOI: 10.5061/dryad.jn8108d/1
title: figurethe raw data of the manuscript
DOI: 10.5061/dryad.p6v01kd/1
title: Klein & Ramon Database Table S1

description: Table S1. Complete database, in an Excel spreadsheet.
DOI: 10.5061/dryad.v46p2jh/59
title: ESI_Naive_S10
DOI: 10.5061/dryad.v46p2jh/60
title: ESI_Naive_S11
DOI: 10.5061/dryad.v46p2jh/61
title: ESI_Naive_S12
DOI: 10.5061/dryad.v46p2jh/62
title: ESI_Naive_S13
DOI: 10.17632/6phtg4k2vg.1
title: Data for: Paleoenvironmental, paleoclimatic and stratigraphic implications of the mineralogical content of the Irati Formation, Paraná Basin, Brazil

description: Organic geochemistry data and semiquantitaitve analysis.
DOI: 10.17632/6tbfxz7mb8.1
title: Data for: Research on Design Optimization and Manufacturing of coating Pipes for Automobile seal Based on Selective Laser Melting

description: the raw images including the AM manufacturing of the piples, and include the tesing result of the coating pipes
DOI: 10.17632/98w7wdz2pw.1
title: Data for: Benthic foraminifera as indicators of river discharge in the Western South Atlantic continental shelf margin

description: Tables
DOI: 10.17632/k5g9cx89zt.1
title: Data for: Epoxy/ionic liquid-like MWCNTs composites with improved processability and mechanical properties

description: FT-IR spectra of MWCNTs, MWCNTs-COOH, DC5700-g-MWCNTs, and MWCNTs-iL; Raman spectra of MWCNTs and MWCNTs-iL; Shear viscosity of neat epoxy and epoxy suspensions filled with MWCNTs and MWCNTs-iL
DOI: 10.17632/k5g9cx89zt.2
title: Data for: Epoxy/ionic liquid-like MWCNTs composites with improved processability and mechanical properties

description: FT-IR spectra of MWCNTs, MWCNTs-COOH, DC5700-g-MWCNTs, and MWCNTs-iL; Raman spectra of MWCNTs and MWCNTs-iL; Shear viscosity of neat epoxy and epoxy suspensions filled with MWCNTs and MWCNTs-iL
DOI: 10.5061/dryad.1b1k1sm/1
title: Experimental_raw_data
DOI: 10.5061/dryad.249v096/10
title: Differentiation and distance matrices used in MMRR analyses

description: This ZIP folder contains genetic (FST) and phenotypic (PST) differentiation matrices and distance matrices (geographic, resistance, and environmental) used in Multiple Matrix Regression with Randomization (MMRR) analyses
DOI: 10.5061/dryad.249v096/11
title: Sampled populations and individuals

description: Description of individual and population codes used in the different analyses and genomic datasets.
DOI: 10.5061/dryad.249v096/12
title: BFD input files

description: This ZIP folder contains the input files (.xml format) used to perform Bayes Factor Delimitation (BFD) analyses in SNAPP
DOI: 10.5061/dryad.249v096/5
title: Raw landmark coordinates of morphological traits

description: This ZIP folder contains raw coordinates of landmarks used to characterize shape variation of the different morphological traits (head, pronotum, forewing and ovopositor valve) analyzed in males and females. Landmarks are stored in TPS format.
DOI: 10.5061/dryad.249v096/6
title: Principal component scores of morphological traits

description: Principal component scores (PC1 and PC2) summarizing shape variation of the different morphological traits (head, pronotum, forewing and ovopositor valve) analyzed in males and females
DOI: 10.5061/dryad.249v096/7
title: STRUCTURE input file

description: Input file (str. format) used for analyses of genetic structure in STRUCTURE
DOI: 10.5061/dryad.249v096/8
title: FASTSTRUCTURE and PCA input file

description: Input file (str. format) used for analyses of genetic structure in FASTSTRUCTURE and ADEGENET (PCA)
DOI: 10.5061/dryad.249v096/9
title: CONSTRUCT input files

description: This ZIP folder contains the input files (genetic and geographic data) used for spatial analyses of genetic structure in CONSTRUCT
DOI: 10.5061/dryad.4kd3dq5/19
title: P12P14.fixedgeno
DOI: 10.5061/dryad.4kd3dq5/20
title: P12P14.pheno
DOI: 10.5061/dryad.4kd3dq5/21
title: P12P14allfamfixed
DOI: 10.5061/dryad.4kd3dq5/22
title: Pedigree R script
DOI: 10.5061/dryad.4kd3dq5/23
title: Phenotype_final
DOI: 10.5061/dryad.4kd3dq5/24
title: Phenotype_size_correction
DOI: 10.5061/dryad.4kd3dq5/25
title: Phenotypic_selection
DOI: 10.5061/dryad.4kd3dq5/26
title: phenotypic_trajectory
DOI: 10.5061/dryad.4kd3dq5/27
title: pitx1_ben_lim_coded_genotypes
DOI: 10.5061/dryad.57c0420/1
title: Wintering ground data from migratory willow warblers

description: This file contains data collected from migratory willow warblers (Phylloscopus trochilus) on their wintering grounds in Zambia. Data includes malaria prevalence and intensity, feather quality variables, corticosterone, stable hydrogen isotope analysis of feathers (H), and body size measurements.
DOI: 10.5061/dryad.72s8g4j/1
title: Meta-analysis from articles reporting phenotypic plasticity between 1987 and 2011

description: We compared the phenotypic plasticity of life-history and non-life history traits in a meta-analysis that investigated 24 years of research. We first examined 583 papers that responded to the keywords “life history & morphology & plasticity” between 1991-2006 from all databases in Web of Knowledge (WoK-ISI) and between 2007-2011 from Web of Science (ISI), as well as a few studies known to us that met the criteria published between 1987 and 2011. From these, we selected the 213 studies that reported reaction norms in different trait types across environments and species. Data extraction from each paper included information from all tables, text, and figures using the software Image J. Quantification of the reaction norms was achieved through the computation of the CV of the trait expression across environments. We computed 5,885 coefficients of variation including 211 species exposed to at least two and at most 11 different environments. The readme file from this same project will help you understand the information that was collected. The data is associated with the paper: Acasuso-Rivero, C., Murren, C. J., Schlichting, C. D., & Steiner, U. K. (2019). Adaptive phenotypic plasticity for life-history and less fitness-related traits. *Proceedings of the Royal Society B: Biological Sciences*, *286*(1904), 20190653. https://doi.org/10.1098/rspb.2019.0653
DOI: 10.5061/dryad.78j501j/1
title: Taxus baccata SNP file

description: This VCF file includes the filtered SNP dataset for 120 Taxus baccata samples (25,726 SNPs).
DOI: 10.5061/dryad.7qr55jn/1
title: Individual level trait values

description: Trait data for individuals. MC = moisture content; FM = fresh mass; DM = dry mass
DOI: 10.5061/dryad.7qt30vf/1
title: Data for Bell et al. 2019 Proc B

description: Spreadsheet containing the pH, phytoplankton, and zooplankton measurements taken in all mesocosms on all sampling occasions. A treatment key is also provided.
DOI: 10.5061/dryad.8kd1d3f/1
title: Mitochondrial cyt b sequences

description: Data collected from blood samples from Mississippi songbirds
DOI: 10.5061/dryad.bd157bv/2
title: Stream water concentrations of herbicides and nutrients for sites in the northern Missouri and southern Iowa region, 1994 to 1999

description: The data set contains stream water concentrations of herbicides and nutrients for 153 sites in the northern Missouri/southern Iowa region from 1994 to 1995 and additional data from 1996 to 1999 for 21 sites. The data are available in Microsoft Excel 2010 format. Sheet 1 (Metadata) of the file contains supporting information regarding the length of record, site locations, parameters measured, concentrations units, method detection limits, describes the meaning of zero and blank cells, defines the major land resource areas (MLRAs) of the region, and provides a link to the U. S. Geological Survey discharge data. Sheet 2 (Site names and locations) has a list of the site names by MLRA, river system, and site name. It also contains site locations, provided as Universal Transverse Mercator coordinates, drainage areas, and indicates which sites were co-located at U. S. Geological Survey gauge sites. Sheet 3 (Concentration Data) contains data for 15 herbicide and nutrient analytes along with the corresponding site name, river system, and MLRA.
DOI: 10.5061/dryad.bs78391/1
title: Supplementary_Material

description: Supplementary Table 1. Adrenal vein sampling results of the proband. Supplementary Figure 1: Changes in plasma aldosterone concentration (PAC), plasma renin activity (PRA), aldosterone renin ratio (ARR), and blood pressure in the proband and younger brother . Supplementary Figure 2. The pedigree of the family.Supplementary Table 2. Baseline characteristics of the two patients
DOI: 10.5061/dryad.c4m181p/1
title: Two-dimensional images of unstable infiltration in initially dry heterogeneous porous media in laboratory experiments

description: We provide a data set of unstable infiltration into initially dry homogeneous and heterogeneous porous media. The data set contains small 2D experiments (Exp. 3-11 in Table 12 of the associated manuscript) as well as selected experiments conducted in large tanks. For small 2D experiments, radiographic images are provided, while large 2D experiments are documented via RGB images. Datasets contain a reference image "0.*" before the onset of finger formation, where the porous media in the domain, except for the upper fine layer, is completely dry. For the radiography dataset, the measured neutron intensity corresponds to I in Eq. [1-2] and the reference image “0.fits” corresponds to Idry in Eq. [2] of the manuscript. Datasets for radiography (Exp. 3-11) contain an additional empty "empty.fits" image where the flow cell is absent. Other filenames relate to time in seconds after onset of finger formation The radiography dataset (Exp. 3-11) is saved in the Flexible Image Transport System (FITS) format, which can be opened with common image processing tools such as ImageJ or computing environments such as Matlab. More information regarding the file format can be found at https://fits.gsfc.nasa.gov/fits_home.html. Each FITS file contains a 512 by 512 matrix of pixelwise measured neutron intensities [neutrons/(px*s)]. The dimensions of the pixels can be found in the table below. Fits files furthermore contain supporting information that has not been utilized in the manuscript but might prove useful, such as number of bits per data pixel and exposure time. For evaluation as conducted in the manuscript, the radiography raw data given in this dataset has been processed to eliminate the background noise with a wiener noise-removal filter. More Information on the radiography facility can be found at https://www.psi.ch/sinq/PublicationPolicyEN/NEUTRA.pdf.
DOI: 10.5061/dryad.ck2v06j/1
title: Strobl_et_al_2019_Trypanosomatid parasites in honeybees and solitary bees_raw data
DOI: 10.5061/dryad.h0m7g03/1
title: Howler monkey group census records from BCI, Panama

description: This comma separated values spreadsheet contains census records of howler monkey groups collected by Katharine Milton on Barro Colorado Island, Panama from 1974-2018
DOI: 10.5061/dryad.h0m7g03/2
title: Trail map of Barro Colorado Island, Panama

description: Map of trails on Barro Colorado Island, Panama, where Katharine Milton conduced her howler monkey group censuses. The LOC variable in the data file refers to trail names and locations as described in the README.pdf file. This map is available online at: https://biogeodb.stri.si.edu/bioinformatics/bci_soil_map/images/maps/bci_simple.jpg.
DOI: 10.5061/dryad.hf33q77/1
title: Supplemental Figures

description: Supplemental Figure 1. Alpha rarefaction curves for LD and DD entrained NV. Alpha rarefaction curves for the associated microbiota for NV that were entrained to either a 12-hour light: 12-hour dark light cycle (red squares) or 24 hours of darkness (blue circles) based on the rarefaction depth (1,080 sequences) used for all PCoA plots. Supplemental Figure 2. Number of OTUs for the ‘core’ bacterial community. Enumeration of the bacterial phylotypes of the ‘core’ bacterial community associated with NV for LD and DD entrained individuals for 60%, 70%, 80%, 90%, and 100% of sampled anemones. Supplemental Figure 3. Beta-diversity statistics for ‘core’ diversity analyses. Representation of statistical comparisons (ANOSIM) between the ‘core’ (at 60%, 70%, 80%, 90%, and 100%) bacterial communities associated with LD and DD entrained NV. Supplemental Figure 4. ‘Core’ bacterial taxa associated with adult NV across treatments. Classes of bacteria associated with LD and DD entrained NV for the ‘core’ community at the 60%, 70%, 80%, 90%, and 100% level.
DOI: 10.5061/dryad.hf33q77/2
title: Supplemental Note

description: This Supplementary Note outlines the bioinformatic pipeline used to analyze the 16S rRNA data in this study via QIIME.
DOI: 10.5061/dryad.hf33q77/3
title: Supplemental Tables

description: Supplemental Table 1. PCR recipe and thermal conditions for 16S rRNA amplification. Supplemental Table 2. Differentially abundant OTUs between LD and DD entrained NV. Supplemental Table 3. Alpha diversity estimates of LD and DD entrained NV and corresponding statistics.
DOI: 10.5061/dryad.hf33q77/4
title: Raw Sequence Files

description: Adult Nematostella vectensis were used for these experiments. Individuals were reared at room temperature and ambient lighting conditions. In preparation for the experiment, adults were split into glass dishes and transferred to an incubator at 25C. Full spectrum LED lights were used to simulate diel light (LD). One group of animals were exposed to LD conditions and the second group was maintained in complete darkness (DD) for 30 days. Four (4) replicates from each condition were sampled every 4-hour for a total of 11 time points. Using high throughput sequencing of 16S amplicons representing the bacterial communities associated with N. vectensis, we assayed community composition and membership as well as cycles of differential abundance.
DOI: 10.5061/dryad.j6h230v/3
title: Defoliation Data

description: The data are the annual proportion of land area defoliated by gypsy moths across the Northeastern United States for 1990-2015. Defoliation was mapped with aerial surveys conducted by each state. Frequency of defoliation (0/1) in 1 × 1 km rasters was aggregated into 8 × 8 km grid cells. The data are limited to 1,327 focal grid cells in which defoliation was detected in 4 or more years both in the focal grid cell and at least 1 of the 8 nearest neighbour grid cells. The column headings “xcoord” and “ycoord” are coordinates expressed in meters based on the NAD 1983 Albers Projection, Central Meridian &gt;  -96, Standard Parallel 1 = 20, Standard Parallel 2 = 60, Latitude Of Origin = 40 and Datum = D North American 1983. The remaining columns are years 1990-2015.
DOI: 10.5061/dryad.j6h230v/4
title: PRISM weather data

description: This file contains weather data derived from the the PRISM Climate Group, Oregon State University (http://prism.oregonstate.edu), spatially referenced within 8 × 8 km grid cells. The cells in this data are limited to 1,327 focal grid cells in which gypsy moth defoliation was detected in 4 or more years both in the focal grid cell and at least 1 of the 8 nearest neighbour grid cells. The first set of columns are weather variables abbreviated as “tmax” (mean maximum temperature, “tmin” = mean minimum temperature, and “ppt” = precipitation. The month for weather variable is given as 01-12 (January – December).  Temperature is in units of degrees Celsius and precipitation is in millimeters. The column headings “xcoord” and “ycoord” are coordinates expressed in meters based on the NAD 1983 Albers Projection, Central Meridian &gt;  -96, Standard Parallel 1 = 20, Standard Parallel 2 = 60, Latitude Of Origin = 40 and Datum = D North American 1983. The remaining columns are years 1990-2015.
DOI: 10.5061/dryad.q2d60q3/1
title: Supplementary Material
DOI: 10.5061/dryad.q2d60q3/2
title: Dataset S1

description: Dataset S1. Diet data for each taxon in the tree, and supporting references
DOI: 10.5061/dryad.q2d60q3/3
title: Dataset S2

description: Time-calibrated animal phylogeny used
DOI: 10.5061/dryad.q2d60q3/4
title: Dataset S3

description: Diet data for each taxon in the tree, with data modified for four phyla
DOI: 10.5061/dryad.q2f55kf/1
title: Insect taxa captured by modified window traps

description: Number of specimens per insect taxon captured by top and bottom collection units of modified window traps in forests in the southern Black Forest (Germany) between March and August in 2017. Column names: PlotID - Identifier for study plot; TrapID - Identifier for each of two traps per study plot; Collection_Unit - Identifier for top or bottom collection unit of a trap; Collect_start/_end - Start/end of a sampling period; Sampling_period - Identifier for pooling samples despite varying collection start into sampling periods; Sample_ID - Unique identifier for each sample
DOI: 10.5061/dryad.qk58nt2/1
title: README
DOI: 10.5061/dryad.qk58nt2/2
title: segmentation

description: Python scripts for segmentation.
DOI: 10.5061/dryad.qk58nt2/3
title: plys

description: 3D surface models in ply format, which were created using the python scripts and Amira software.
DOI: 10.5061/dryad.qk58nt2/4
title: landmarks

description: Landmarks data in csv format, which were taken from the 3D surface models using Stratovan Checkpoint software. The file names were linkable-anonymized (see the main text), which can be identified by "anonylist.csv".