cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14264607
title: Genomic landscape of B-other acute lymphoblastic leukemia in an adult retrospective cohort with a focus on <i>BCR-ABL1</i>-like subtype

description: <i>BCR-ABL1</i>-like acute lymphoblastic leukemia (ALL) is a high-risk disease with a complex genomic background. Though extensively studied, data on the frequency and mutual associations of present mutations are still incomplete in adult patients. This retrospective study aims to map the genomic landscape of B-other ALL in a cohort of adult patients with a focus on the <i>BCR-ABL1</i>-like ALL subtype. We analyzed bone marrow and peripheral blood samples of adult B-other ALL patients treated consecutively at three major Czech teaching hospitals. Samples were analyzed by cytogenetic methods, gene expression profiling, multiplex ligation-dependent probe amplification (MLPA), and next-generation sequencing (NGS). Fifty-eight B-other ALL patients (not <i>BCR-ABL1</i>, <i>KMT2A</i>-rearranged, <i>ETV6-RUNX1</i>, <i>TCF3-PBX1</i>, or iAMP21) were included in the study. Median follow-up was 23.8 months. Samples from 33 patients were available for a gene expression analysis, 48.9% identified as <i>BCR-ABL1</i>-like ALL. Of the <i>BCR-ABL1</i>-like ALL cases, 18.8% harbored <i>IGH-CRLF2</i> and 12.5% <i>P2RY8-CRLF2</i> fusion gene. We observed a higher MRD failure rate in <i>BCR-ABL1</i>-like than in non-<i>BCR-ABL1</i>-like ALL patients after the induction treatment (50.0 vs. 13.3%, <i>p</i>=.05). There was a trend to worse progression-free and overall survival in the <i>BCR-ABL1</i>-like group, though not statistically significant. Deletions in <i>IKZF1</i> gene were found in 31.3% of <i>BCR-ABL1</i>-like cases. Patients with concurrent <i>IKZF1</i> and <i>CDKN2A/B, PAX5</i> or PAR1 region deletions (<i>IKZF1</i><sup>plus</sup> profile) had significantly worse progression-free survival than those with sole <i>IKZF1</i> deletion or <i>IKZF1</i> wild-type (<i>p</i>=.02). NGS analysis was performed in 54 patients and identified 99 short variants in <i>TP53, JAK2, NRAS, PAX5, CREBBP, NF1, FLT3, ATM, KRAS, RUNX1</i>, and other genes. Seventy-five of these gene variants have not yet been described in B-cell precursor ALL to date. This study widens existing knowledge of the <i>BCR-ABL1</i>-like and B-other ALL genomic landscape in the adult population, supports previous findings, and identifies a number of novel gene variants.
DOI: 10.5517/ccdc.csd.cc25myzr
title: CCDC 2015185: Experimental Crystal Structure Determination

description: Related Article: Pengfei Chen, Yuanye Yin, Yingyong Ni, Huichao Zhu, Jianyan Huang, Jiaxiang Yang, Jianjun Yang, Lin Kong|2021|CrystEngComm|23|2289|doi:10.1039/D1CE00012H
DOI: 10.5517/ccdc.csd.cc25mz0t
title: CCDC 2015186: Experimental Crystal Structure Determination

description: Related Article: Pengfei Chen, Yuanye Yin, Yingyong Ni, Huichao Zhu, Jianyan Huang, Jiaxiang Yang, Jianjun Yang, Lin Kong|2021|CrystEngComm|23|2289|doi:10.1039/D1CE00012H
DOI: 10.21227/9syq-v242
title: January-25-Dong-Jiawei

description: January-25-Dong-Jiawei
DOI: 10.15468/3as4kq
title: Evolutionary Morphology Of The Primary Male Reproductive System And Spermatozoa Of Goblin Spiders (Oonopidae; Araneae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lipke, Elisabeth, Michalik, Peter (2015): Evolutionary Morphology Of The Primary Male Reproductive System And Spermatozoa Of Goblin Spiders (Oonopidae; Araneae). Bulletin of the American Museum of Natural History 2015 (396): 1-72, DOI: 10.1206/906.1, URL: http://www.bioone.org/doi/10.1206/906.1
DOI: 10.6084/m9.figshare.13030436
title: County-level crop nitrogen budget history in the US during 1970-2019

description: This document describes the datasets used for “Half-century history of crop nitrogen use efficiency in the conterminous United States: Variations over time, space and crop types”. The datasets include county-level total nitrogen (N) input rate, nitrogen use efficiency, crop recovered N and N surplus of eight crop types,in the U.S. from 1970 to 2019. The datasets reproduce the results of the manuscript and can be used to explore other topics.<br>
DOI: 10.6084/m9.figshare.13030436.v4
title: County-level crop nitrogen budget history in the US during 1970-2019

description: This document describes the datasets used for “Half-century history of crop nitrogen use efficiency in the conterminous United States: Variations over time, space and crop types”. The datasets include county-level total nitrogen (N) input rate, nitrogen use efficiency, crop recovered N and N surplus of eight crop types,in the U.S. from 1970 to 2019. The datasets reproduce the results of the manuscript and can be used to explore other topics.<br>
DOI: 10.5281/zenodo.4627961
title: Model fields supporting the publication "Coastal processes modify projections of some climate-driven stressors in the California Current System"

description: The model fields supporting the work described in this paper can be found. They include model results from two downscale projections from the California Current System for 2100 under RCP 8.5 presented as deltas - or differences from the simulated base conditions. The results include physical (temperature) as well as biogeochemical fields (pH, O2, nutrients). The model fields have been averaged in time and space as described in the manuscript Siedlecki, S. A., Pilcher, D., Howard, E. M., Deutsch, C., MacCready, P., Norton, E. L., Frenzel, H., Newton, J., Feely, R. A., Alin, S. R., and Klinger, T.: Coastal processes modify projections of some climate-driven stressors in the California Current System, Biogeosciences Discuss. [preprint], https://doi.org/10.5194/bg-2020-279, in review, 2020.
DOI: 10.17870/bathspa.8118584.v1
title: danceroom Spectroscopy 2.0 - Performance and Installation at Zentrum für Kunst und Medien (ZKM) in Karlsruhe, Germany (2014)

description: danceroom Spectroscopy (dS) is an arts/science collaborative project exploring molecular dynamics, allowing users to interact with a scientifically-accurate molecular simulation through movement in real time. Hyde’s contribution is the sound and music for the project, involving a complex interactive system (for a public installation) and an hour long interactive score for a dance-based performance using the system.<br><br>This item contains photo documentation of a performance and installation at Zentrum für Kunst und Medien (ZKM) in Karlsruhe, Germany, 4-6 January 2014.<br><br><b>Photos by Joseph Hyde.</b><b>Used with permission.<br></b><b><br>The work is under copyright and may not be used without permission. Use of this repository acknowledges cooperation with its policies and relevant copyright law.</b>
DOI: 10.5519/qd.4hcg4nhj
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2 records)
DOI: 10.5519/qd.lhe1ai6y
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.14265017
title: Final MOTU Table

description: The final MOTU table used in all analyses
DOI: 10.34808/m5hv-4z75
title: Dynamic impedance spectra of programmable dynamically changing RC model based on digital potentiometers

description: The dataset presents non-stationary impedance spectra of the RC model presented in the figure below. This model contains two digital potentiometers controlled digitally by the microcontroller. This solution allows to programmably control the value of the model impedance. Thanks to this, the model can be used as a test engine for evaluation of the dynamic impedance spectroscopy (DEIS). The impedance spectrum frequency range (1 Hz – 100 kHz) was selected in order to map the whole range of the model impedance changes. Details could be found in the refereced paper.  Figure top-right presents exemplary changes of thepotentiometers resistance for the following set of parameters: R2 START = R3 START = 1 kohm, R2 STOP = R3 STOP = 100 kohm. Figure top-left presents the resulting instantaneous impedance spectra for the model presented in Figure bottom-left and for parameters changing according to Figure top-right.
DOI: 10.6084/m9.figshare.14265044
title: Bat Diets Taxonomy Table

description: The final taxonomy table of plants and invertebrates identified in this study. This is the taxonomy used for all analyses
DOI: 10.5517/ccdc.csd.cc260h4w
title: CCDC 2026257: Experimental Crystal Structure Determination

description: Related Article: Dong Luo, Tao Zuo, Ji Zheng, Zi-Hao Long, Xue-Zhi Wang, Yong-Liang Huang, Xiao-Ping Zhou, Dan Li|2021|Mater. Chem. Front.|5|2777|doi:10.1039/D1QM00024A
DOI: 10.5517/ccdc.csd.cc26hw9x
title: CCDC 2041049: Experimental Crystal Structure Determination

description: Related Article: Armeen Siddique, I. Mantasha, Poonam Rawat, Ram Niwas Singh, M. Shahid, Sweta Trivedi, Anshu Gautam, Mohd Zeeshan|2021|CrystEngComm|23|2316|doi:10.1039/D0CE01577F
DOI: 10.5517/ccdc.csd.cc26r5w1
title: CCDC 2048073: Experimental Crystal Structure Determination

description: Related Article: Valentina Milašinović, Marijana Jurić, Krešimir Molčanov|2021|CrystEngComm|23|2304|doi:10.1039/D1CE00157D
DOI: 10.3886/e119446v71
title: COVID-19 US State Policy Database

description: For questions or comments about the database please contact:<br>Alexandra Skinner <br>skinnera@bu.edu <br>Research Fellow & Database Manager<br>Department of Health Law, Policy & Management <br>Boston University School of Public Health<br><br>Database of state policies on closures, shelter-in-place orders, housing protections, changes to Medicaid and SNAP, physical distancing closures, reopening, and more created by researchers at the Boston University School of Public Health. Policies included are state-wide directives or mandates, not guidance or recommendations. In order for a policy to be included, it must apply to the entire state. We are working quickly to go through state government websites to make the policy database as complete and accurate as possible in a rapidly changing policy context. If you use data on a given policy, we encourage you to triangulate based on additional sources of policy data and to review the source documentation to consider the coding decisions that are right for your work. Of course, please email us if you note a discrepancy so we can improve the database for everyone. State policy source documentation can be found at: tinyurl.com/statepolicysources.
description: State policies. Smallest Geographic Unit: State
description: other; Contributors: Megan Cole Brahim, Noa Krawczyk, Carolyn Hoffman, Claire Corkish, Elizabeth Ferrara, Elizabeth Long, Emily Baroni, Faith Contador, Hannah Simon, Morgan Simko, Rachel Scheckman, Sarah Brewer, Sue Kulkarni, Felicia Heykoop, Manish Patel, Aishwarya Vidyasagaran, Andrew Chiao, Cara Safon, Samantha Burkhart, Harry Jung, Victor Lee, Marina MacKinnon, Aarohi Rede, Marie Vearling, Sophie Li, Christina Wang, Tim Levengood, María Jordán P. Emma Chistolini
DOI: 10.5517/ccdc.csd.cc26r5x2
title: CCDC 2048074: Experimental Crystal Structure Determination

description: Related Article: Valentina Milašinović, Marijana Jurić, Krešimir Molčanov|2021|CrystEngComm|23|2304|doi:10.1039/D1CE00157D
DOI: 10.5517/ccdc.csd.cc26r5y3
title: CCDC 2048075: Experimental Crystal Structure Determination

description: Related Article: Valentina Milašinović, Marijana Jurić, Krešimir Molčanov|2021|CrystEngComm|23|2304|doi:10.1039/D1CE00157D
DOI: 10.5517/ccdc.csd.cc26r5z4
title: CCDC 2048076: Experimental Crystal Structure Determination

description: Related Article: Valentina Milašinović, Marijana Jurić, Krešimir Molčanov|2021|CrystEngComm|23|2304|doi:10.1039/D1CE00157D
DOI: 10.5517/ccdc.csd.cc26r606
title: CCDC 2048077: Experimental Crystal Structure Determination

description: Related Article: Valentina Milašinović, Marijana Jurić, Krešimir Molčanov|2021|CrystEngComm|23|2304|doi:10.1039/D1CE00157D
DOI: 10.5517/ccdc.csd.cc26r617
title: CCDC 2048078: Experimental Crystal Structure Determination

description: Related Article: Valentina Milašinović, Marijana Jurić, Krešimir Molčanov|2021|CrystEngComm|23|2304|doi:10.1039/D1CE00157D
DOI: 10.5517/ccdc.csd.cc26r628
title: CCDC 2048079: Experimental Crystal Structure Determination

description: Related Article: Valentina Milašinović, Marijana Jurić, Krešimir Molčanov|2021|CrystEngComm|23|2304|doi:10.1039/D1CE00157D
DOI: 10.5517/ccdc.csd.cc26r639
title: CCDC 2048080: Experimental Crystal Structure Determination

description: Related Article: Valentina Milašinović, Marijana Jurić, Krešimir Molčanov|2021|CrystEngComm|23|2304|doi:10.1039/D1CE00157D
DOI: 10.5517/ccdc.csd.cc26r64b
title: CCDC 2048081: Experimental Crystal Structure Determination

description: Related Article: Valentina Milašinović, Marijana Jurić, Krešimir Molčanov|2021|CrystEngComm|23|2304|doi:10.1039/D1CE00157D
DOI: 10.5517/ccdc.csd.cc26r65c
title: CCDC 2048082: Experimental Crystal Structure Determination

description: Related Article: Valentina Milašinović, Marijana Jurić, Krešimir Molčanov|2021|CrystEngComm|23|2304|doi:10.1039/D1CE00157D
DOI: 10.5517/ccdc.csd.cc26r66d
title: CCDC 2048083: Experimental Crystal Structure Determination

description: Related Article: Valentina Milašinović, Marijana Jurić, Krešimir Molčanov|2021|CrystEngComm|23|2304|doi:10.1039/D1CE00157D
DOI: 10.5517/ccdc.csd.cc26t6hr
title: CCDC 2050014: Experimental Crystal Structure Determination

description: Related Article: Weidong Yin, Zengming Yang, Shaoxiong Zhang, Yuan Yang, Lixia Zhao, Zhao Li, Bo Zhang, Shengjun Zhang, Bingyang Han, Hengchang Ma|2021|Mater. Chem. Front.|5|2849|doi:10.1039/D0QM01047B
DOI: 10.5517/ccdc.csd.cc26tg3m
title: CCDC 2050250: Experimental Crystal Structure Determination

description: Related Article: Fang-Fang Di, Hang Peng, Hua Zhang, Xue-Qin Huang, Wu-Jia Chen, Yu-Ling Liu, Yuan-Yuan Tang|2021|Mater. Chem. Front.|5|2842|doi:10.1039/D1QM00007A
DOI: 10.6084/m9.figshare.14192933
title: River herring culvert passage

description: Data used in analyses in the manuscript entitled: "Culverts delay upstream and downstream migrations of river herring (Alosa spp.)".<br>
DOI: 10.6084/m9.figshare.14265050
title: Sample Metadata

description: Sample metadata including species of origin, sex, and other relevant details about the bats involved in this study.
DOI: 10.15468/p3k74n
title: Manta-like planktivorous sharks in Late Cretaceous oceans

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vullo, Romain, Frey, Eberhard, Ifrim, Christina, Gonzaléz, Margarito A. González, Stinnesbec, Eva S., Stinnesbeck, Wolfgang (2021): Manta-like planktivorous sharks in Late Cretaceous oceans. Science 371: 1-33, DOI: 10.1126/science.abc1490
DOI: 10.5281/zenodo.4628223
title: Unraveling a lignocellulose-decomposing bacterial consortium from soil associated with dry sugarcane straw by genomic-cen- tered metagenomics - Supplementary Materials

description: Unraveling a lignocellulose-decomposing bacterial consortium from soil associated with dry sugarcane straw by genomic-centered metagenomics - Supplementary Materials
DOI: 10.5281/zenodo.4628222
title: Unraveling a lignocellulose-decomposing bacterial consortium from soil associated with dry sugarcane straw by genomic-cen- tered metagenomics - Supplementary Materials

description: Unraveling a lignocellulose-decomposing bacterial consortium from soil associated with dry sugarcane straw by genomic-centered metagenomics - Supplementary Materials
DOI: 10.21227/5128-7h42
title: Decomposition-Residuals Neural Networks: Hybrid system identification applied to electricity forecasting

description: COVID-19 causes issues in energy demand profile forecasting. Day-ahead energy forecasting systems struggle to provide accurate demand predictions. Decomposition-Residuals Deep Neural Networks (DR-DNN) is a two-layer hybrid architecture with: a decomposition and a nonlinear layer. Based on statistical tests, the decomposition layer applies robust signal decomposition and low-order system identification of input data streams into: trend, seasonal and residuals signals. Utilizing calendar information, temporal signals are added: sinusoidal day/night cycles, weekend/weekday, etc. The nonlinear layer can learn unknown nonlinear patterns using typical DNN models like Recurrent Neural Networks (RNN) and Convolutional Neural Networks (CNN). DR-DNN outperformed baseline, linear, and plain DNN models on next-day electricity forecasts within the COVID-19 era (September 2020-January 2021).
DOI: 10.18112/openneuro.ds003151.v2.0.0
title: Stress-associated brain activation across the hormonal contraceptive cycle
DOI: 10.6084/m9.figshare.14261894
title: Supplemental Table.pdf

description: Supplemental Table
DOI: 10.6084/m9.figshare.14261894.v1
title: Supplemental Table.pdf

description: Supplemental Table
DOI: 10.6084/m9.figshare.14237687
title: Shifts in the community composition of caddisflies (Insecta: Trichoptera) in a subtropical river over three decades

description: <b>Data, metadata, and R code for:</b>Murray-Stoker, K. M., D. P. Batzer, D. Murray-Stoker, and J. V. McHugh. 2020. Shifts in the community composition of caddisflies (Insecta: Trichoptera) in a subtropical river over three decades. Ecological Entomology 45: 514-524.<b><br></b><b>Abstract</b>1. Trichoptera is an ecologically and taxonomically diverse order, and caddisfly species are under increasing pressure from anthropogenic threats to larval habitats, rivers, and streams.2. This study evaluated long-term changes in caddisfly communities of the Ogeechee River, a subtropical blackwater river in the south-eastern U.S. Coastal Plain, to understand how changes manifest as a result of ongoing human impacts. Two datasets separated by more than 30years were used, each representing a 2-year monthly quantitative sampling effort (1981–1983; 2015–2017).3. Community structure of the Ogeechee River caddisflies significantly changed, though not in ways that were predicted. The average sensitivity values of the caddisfly community declined, contrary to the expectation that increasing human impacts on a river ecosystem would promote the survival of more pollution-tolerant taxa.4. Generic richness increased in the 2010s from the 1980s, perhaps as a result of relaxed competition following declines of large, dominant taxa. The increases in various taxa have resulted in similar overall abundance metrics between time periods, although other studies of Ogeechee River invertebrates indicate that the biomass of the new taxa is far lower than that produced by the assemblages of the 1980s. Functional richness, evenness, and dispersion were higher in the 2010s, but divergence was not.5. This suggests that more nuanced monitoring efforts, focused on the threats to ecological function and the role of caddisflies (and other sensitive freshwater organisms), will be required to evaluate the changes in community structure and determine which taxa are most adversely affected.
DOI: 10.6084/m9.figshare.14237687.v1
title: Shifts in the community composition of caddisflies (Insecta: Trichoptera) in a subtropical river over three decades

description: <b>Data, metadata, and R code for:</b>Murray-Stoker, K. M., D. P. Batzer, D. Murray-Stoker, and J. V. McHugh. 2020. Shifts in the community composition of caddisflies (Insecta: Trichoptera) in a subtropical river over three decades. Ecological Entomology 45: 514-524.<b><br></b><b>Abstract</b>1. Trichoptera is an ecologically and taxonomically diverse order, and caddisfly species are under increasing pressure from anthropogenic threats to larval habitats, rivers, and streams.2. This study evaluated long-term changes in caddisfly communities of the Ogeechee River, a subtropical blackwater river in the south-eastern U.S. Coastal Plain, to understand how changes manifest as a result of ongoing human impacts. Two datasets separated by more than 30years were used, each representing a 2-year monthly quantitative sampling effort (1981–1983; 2015–2017).3. Community structure of the Ogeechee River caddisflies significantly changed, though not in ways that were predicted. The average sensitivity values of the caddisfly community declined, contrary to the expectation that increasing human impacts on a river ecosystem would promote the survival of more pollution-tolerant taxa.4. Generic richness increased in the 2010s from the 1980s, perhaps as a result of relaxed competition following declines of large, dominant taxa. The increases in various taxa have resulted in similar overall abundance metrics between time periods, although other studies of Ogeechee River invertebrates indicate that the biomass of the new taxa is far lower than that produced by the assemblages of the 1980s. Functional richness, evenness, and dispersion were higher in the 2010s, but divergence was not.5. This suggests that more nuanced monitoring efforts, focused on the threats to ecological function and the role of caddisflies (and other sensitive freshwater organisms), will be required to evaluate the changes in community structure and determine which taxa are most adversely affected.
DOI: 10.6084/m9.figshare.8234015
title: How many roads lead to stillbirth rate reduction? A 30-year analysis of risk factors in a Northern Italy University care center

description: Stillbirths affect more than 2.5 million pregnancies worldwide every year and the progress in reducing stillbirth rates is slower than that required by World Health Organization. The aim of the present study was to investigate which factors were associated with stillbirths in a University Hospital in the North of Italy, over a time span of 30 years. The goal was to identify which factors are potentially modifiable to reduce stillbirth rate. Retrospective case-control study (358 stillbirths, 716 livebirths) subdivided into two study periods (1987–2006 and 2007–2017). The prevalence of conception obtained by assisted reproductive technologies, pregnancy at advanced maternal age, and complications of pregnancy such as preeclampsia, fetal growth restriction (FGR), and other fetal diseases (abnormal fetal conditions including fetal anemia, fetal hydrops, TORCH infections) increased through the years of the study. Despite a rising prevalence, the last 10 years showed a significant reduction in stillbirths associated with preeclampsia and FGR. Similarly, the risk of stillbirth related to abnormal fetal conditions decreased in the second study period and a history of previous stillbirth becomes a nonsignificant risk factor. Altogether these results suggest that in pregnancies perceived as “high risk” (i.e. previous stillbirth, preeclampsia, FGR, abnormal fetal conditions) appropriate care and follow-up can indeed lower stillbirth rates. In conclusion, the road to stillbirth prevention passes inevitably through awareness and recognition of risk factors.