cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18625806
title: Hunting for extremophiles: a systematic screening of freshwater microalgae for tolerance to high pH and high alkalinity cultivation

description: This upload provides all the data and code associated with the manuscript "Hunting for extremophiles: a systematic screening of freshwater microalgae for tolerance to high pH and high alkalinity cultivation" in ACS Sustainable Chemistry & Engineering under the DOI: https://doi.org/10.1021/acssuschemeng.5c09906

Data should be analyzed in R or R studio. The code in the .Rmd file should execute automatically with no modifications by the user as long as the csv file containing data "growth_over_time.csv" is placed in the same working directory that R is set to. The R project (.Rproj) file may also be opened directly to create an R project that is automatically set to the correct directory; again, all files should be placed in one folder for this to work. Metadata explaining the contents of the data file is provided in the README.csv file. Additionally, one html file is provided which contains all the code and output in R markdown format; this allows users to view code and output without directly running code in R.

ABSTRACT: Microalgae hold the potential to supply sustainable food, fuel, plastics, and chemicals at commercial scales. Cultivating microalgae at extreme pH (>10) and high alkalinity provides multiple benefits including 1) reducing the risk of contamination by undesired organisms and 2) enabling direct air capture of CO2, which expands the land area suitable for algae farming compared to using CO2 point sources alone. However, we currently have a limited understanding of which algal taxa can grow under these conditions. Therefore, we conducted a high-throughput screening of 49 freshwater microalgae strains, comprising 40 species, for their ability to grow in moderate (pH 8.5, 25 mM alkalinity), high (pH 10, 75 mM alkalinity), and extreme (pH 10, 150 mM alkalinity) cultivation environments. Our results show that moderate alkalinity tends to significantly increase algae growth (including potentially harmful strains). However, higher levels inhibited all but a small subset of green algae and cyanobacteria. Effects of salinity and alkalinity differed, indicating they are broadly decoupled. Our results identify new industrially relevant alkaline-tolerant strains, show that algae isolated from “normal” ecosystems can be extremophilic, and suggest that future bioprospecting efforts for alkaline-tolerant algae adapted to local climatic conditions could yield additional productivity gains for the algae industry.
DOI: 10.15468/dl.3e8fwc
title: Occurrence Download

description: A dataset containing 15251 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum torvum",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 15251 records from 365 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020630-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcc9tr
title: Occurrence Download

description: A dataset containing 2964767 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Year 1000-2026"
 ]
}

 The dataset includes 2964767 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020602-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17000055
title: Soil parameters measured in European Mole (Talpa europaea) mounds and nearby control areas on a meadow near Csomád, Hungary

description: Soil parameters measured by the near-infrared device of Agrocares Ltd (the Netherlands): pH(H2O), soil organic matter (%), P (M3) (mg/kg), total nitrogen (g/kg), exchangeable K, Mg and Ca (mmol/kg), organic carbon (g/kg), potentially mineralizable nitrogen (g/kg), cation exchange capacity (mmol/kg), total Al (g/kg), total Fe (g/kg), clay (%) and soil moisture (%).
DOI: 10.5281/zenodo.17000054
title: Soil parameters measured in European Mole (Talpa europaea) mounds and nearby control areas on a meadow near Csomád, Hungary

description: Soil parameters measured by the near-infrared device of Agrocares Ltd (the Netherlands): pH(H2O), soil organic matter (%), P (M3) (mg/kg), total nitrogen (g/kg), exchangeable K, Mg and Ca (mmol/kg), organic carbon (g/kg), potentially mineralizable nitrogen (g/kg), cation exchange capacity (mmol/kg), total Al (g/kg), total Fe (g/kg), clay (%) and soil moisture (%).
DOI: 10.15468/dl.3be3hy
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stauntonia brunoniana",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 10 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020631-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18645334
title: Soil parameters measured in European Mole (Talpa europaea) mounds and nearby control areas on a grassland near Rákos Creek, Patak Square, Gödöllő, Hungary: 2026

description: Soil parameters measured by the near-infrared device of Agrocares Ltd (the Netherlands): pH(H2O), soil organic matter (%), P (M3) (mg/kg), total nitrogen (g/kg), exchangeable K, Mg and Ca (mmol/kg), organic carbon (g/kg), potentially mineralizable nitrogen (g/kg), cation exchange capacity (mmol/kg), total Al (g/kg), total Fe (g/kg), clay (%) and soil moisture (%).
DOI: 10.5281/zenodo.18645333
title: Soil parameters measured in European Mole (Talpa europaea) mounds and nearby control areas on a grassland near Rákos Creek, Patak Square, Gödöllő, Hungary: 2026

description: Soil parameters measured by the near-infrared device of Agrocares Ltd (the Netherlands): pH(H2O), soil organic matter (%), P (M3) (mg/kg), total nitrogen (g/kg), exchangeable K, Mg and Ca (mmol/kg), organic carbon (g/kg), potentially mineralizable nitrogen (g/kg), cation exchange capacity (mmol/kg), total Al (g/kg), total Fe (g/kg), clay (%) and soil moisture (%).
DOI: 10.6084/m9.figshare.30954212
title: <b>Supplementary material</b> - A novel set of ultraconserved element (UCE) probes for lacewings and allies (Insecta: Neuropterida)

description: Target-enrichment of ultra-conserved elements (UCE) has proven advantageous in recovering large quantities of phylogenetically informative data even from specimens with suboptimal DNA preservation. It is also possible to develop UCE probe sets with minimal exemplar taxa, enabling the resolution of recalcitrant nodes in the Tree of Life even of rare groups. Unfortunately, probe sets are still lacking for multiple groups of insects, such as the three orders in Neuropterida (Insecta: Holometabola): Megaloptera, Neuroptera and Raphidioptera. Additionally, a well-curated probe set for neuropterids makes it possible for the investigation of their evolution, including reconstructing the ancestral state of characters and examining their life-history transitions. In this study, we developed the first openly available probe set targeting UCEs of Neuropterida. We in-silico tested different parameters to design an optimized probe set that efficiently captures conserved loci of the three orders of Neuropterida. After comparing taxonomically tailored and universal probes, our study suggests that the latter recovers higher number of shared UCEs for the superorder. Accordingly, we provide an optimized probe set that successfully targets 5,577 loci across all Neuropterida lineages.
DOI: 10.6084/m9.figshare.30954212.v1
title: <b>Supplementary material</b> - A novel set of ultraconserved element (UCE) probes for lacewings and allies (Insecta: Neuropterida)

description: Target-enrichment of ultra-conserved elements (UCE) has proven advantageous in recovering large quantities of phylogenetically informative data even from specimens with suboptimal DNA preservation. It is also possible to develop UCE probe sets with minimal exemplar taxa, enabling the resolution of recalcitrant nodes in the Tree of Life even of rare groups. Unfortunately, probe sets are still lacking for multiple groups of insects, such as the three orders in Neuropterida (Insecta: Holometabola): Megaloptera, Neuroptera and Raphidioptera. Additionally, a well-curated probe set for neuropterids makes it possible for the investigation of their evolution, including reconstructing the ancestral state of characters and examining their life-history transitions. In this study, we developed the first openly available probe set targeting UCEs of Neuropterida. We in-silico tested different parameters to design an optimized probe set that efficiently captures conserved loci of the three orders of Neuropterida. After comparing taxonomically tailored and universal probes, our study suggests that the latter recovers higher number of shared UCEs for the superorder. Accordingly, we provide an optimized probe set that successfully targets 5,577 loci across all Neuropterida lineages.
DOI: 10.5281/zenodo.18649944
title: andremann/graspos-pilot-cnr: Release v0.1

description: No description provided.
DOI: 10.15468/dl.uzkbv9
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sumbaviopsis albicans",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 153 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020633-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4d67kq
title: Occurrence Download

description: A dataset containing 1346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((28.91408 40.97489,28.99861 40.99477,29.00158 41.02577,28.9448 41.06456,28.91408 40.97489))",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 1346 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020634-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18649954
title: HOSPITAL-ACQUIRED INFECTIONS: MICROBIOLOGICAL CAUSES, TRANSMISSION PATHWAYS, AND PREVENTION STRATEGIES

description: Hospital-acquired infections (HAIs), also known as nosocomial infections, represent a major challenge to modern healthcare systems worldwide due to their high morbidity, mortality, and economic burden. These infections develop during hospitalization or medical care and were neither present nor incubating at the time of patient admission. The growing prevalence of HAIs is closely linked to invasive medical procedures, prolonged hospital stays, immunocompromised patient populations, and inadequate infection control practices. Understanding the microbiological causes of these infections is essential for effective prevention, diagnosis, and treatment strategies.

Microbiologically, hospital-acquired infections are caused by a wide range of pathogenic microorganisms, including bacteria, viruses, fungi, and, less commonly, parasites. Among these, bacteria are the most frequent etiological agents, particularly multidrug-resistant organisms such as Staphylococcus aureus (including MRSA), Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Acinetobacter baumannii. These pathogens possess various virulence factors, including biofilm formation, toxin production, and antibiotic resistance mechanisms, which enable their persistence in hospital environments and resistance to standard therapies. Viral agents such as influenza viruses, respiratory syncytial virus, and norovirus also contribute significantly to HAIs, especially in intensive care units and pediatric wards. Fungal infections, mainly caused by Candida and Aspergillus species, are increasingly observed among patients with weakened immune systems.

The hospital environment itself serves as a reservoir for pathogenic microorganisms, with contaminated medical equipment, healthcare workers’ hands, air, water systems, and hospital surfaces playing critical roles in transmission. This article aims to comprehensively analyze hospital-acquired infections with a particular focus on their microbiological causes. By reviewing current scientific literature and microbiological evidence, the study highlights the importance of strict infection control measures, continuous microbiological surveillance, and rational antimicrobial use in reducing the incidence of HAIs and improving patient safety.
DOI: 10.5281/zenodo.18649953
title: HOSPITAL-ACQUIRED INFECTIONS: MICROBIOLOGICAL CAUSES, TRANSMISSION PATHWAYS, AND PREVENTION STRATEGIES

description: Hospital-acquired infections (HAIs), also known as nosocomial infections, represent a major challenge to modern healthcare systems worldwide due to their high morbidity, mortality, and economic burden. These infections develop during hospitalization or medical care and were neither present nor incubating at the time of patient admission. The growing prevalence of HAIs is closely linked to invasive medical procedures, prolonged hospital stays, immunocompromised patient populations, and inadequate infection control practices. Understanding the microbiological causes of these infections is essential for effective prevention, diagnosis, and treatment strategies.

Microbiologically, hospital-acquired infections are caused by a wide range of pathogenic microorganisms, including bacteria, viruses, fungi, and, less commonly, parasites. Among these, bacteria are the most frequent etiological agents, particularly multidrug-resistant organisms such as Staphylococcus aureus (including MRSA), Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Acinetobacter baumannii. These pathogens possess various virulence factors, including biofilm formation, toxin production, and antibiotic resistance mechanisms, which enable their persistence in hospital environments and resistance to standard therapies. Viral agents such as influenza viruses, respiratory syncytial virus, and norovirus also contribute significantly to HAIs, especially in intensive care units and pediatric wards. Fungal infections, mainly caused by Candida and Aspergillus species, are increasingly observed among patients with weakened immune systems.

The hospital environment itself serves as a reservoir for pathogenic microorganisms, with contaminated medical equipment, healthcare workers’ hands, air, water systems, and hospital surfaces playing critical roles in transmission. This article aims to comprehensively analyze hospital-acquired infections with a particular focus on their microbiological causes. By reviewing current scientific literature and microbiological evidence, the study highlights the importance of strict infection control measures, continuous microbiological surveillance, and rational antimicrobial use in reducing the incidence of HAIs and improving patient safety.
DOI: 10.15468/dl.j9jckt
title: Occurrence Download

description: A dataset containing 4795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tabernaemontana divaricata",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 4795 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020636-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31342450
title: GST protein sequences for 74 plant species from large-scale genomic analysis

description: This dataset contains curated Glutathione S-transferase (GST) protein sequences identified and analyzed from 74 species, as part of the study<b> '</b><b>Large-Scale Genomic Analysis Reveals the Origin and Evolution of Glutathione S-transferases in Plants'</b>.
DOI: 10.6084/m9.figshare.31342450.v1
title: GST protein sequences for 74 plant species from large-scale genomic analysis

description: This dataset contains curated Glutathione S-transferase (GST) protein sequences identified and analyzed from 74 species, as part of the study<b> '</b><b>Large-Scale Genomic Analysis Reveals the Origin and Evolution of Glutathione S-transferases in Plants'</b>.
DOI: 10.6084/m9.figshare.31342483.v1
title: EffectiLator Dataset

description: This document provides the complete workflow for running the EffectiLator framework manually. It covers diagnostics, training the α-model, and generating validation predictions, using the effective-volume formulation, VR-bounded mechanistic curves, and ±15% α-tolerance. More in the README file.
DOI: 10.6084/m9.figshare.31342483
title: EffectiLator Dataset

description: This document provides the complete workflow for running the EffectiLator framework manually. It covers diagnostics, training the α-model, and generating validation predictions, using the effective-volume formulation, VR-bounded mechanistic curves, and ±15% α-tolerance. More in the README file.
DOI: 10.5281/zenodo.18649967
title: SUYAK SINISHLARINING ZAMONAVIY DAVOLASH USULLARI

description: Suyak sinishlari zamonaviy tibbiyot amaliyotida eng ko‘p uchraydigan travmatik holatlardan biri hisoblanadi. Ular turli yosh guruhlarida, ayniqsa, bolalar, sportchilar va keksalar orasida keng tarqalgan bo‘lib, bemorlarning hayot sifati va mehnat qobiliyatiga salbiy ta’sir ko‘rsatadi. So‘nggi yillarda tibbiyot texnologiyalarining jadal rivojlanishi natijasida suyak sinishlarini davolashda innovatsion va samarali usullar ishlab chiqildi. Ushbu maqolada suyak sinishlarining zamonaviy davolash usullari, ularning afzalliklari, kamchiliklari hamda klinik amaliyotdagi ahamiyati keng yoritilgan.

Annotatsiyada suyak sinishlarining tasnifi, diagnostika usullari va davolash strategiyalarining evolyutsiyasi tahlil qilinadi. Xususan, konservativ davolash, minimal invaziv jarrohlik aralashuvlar, osteosintez texnologiyalari, biologik stimulyatorlar va reabilitatsiya usullarining o‘rni ilmiy asosda ko‘rib chiqiladi. Zamonaviy rentgen, kompyuter tomografiyasi va magnit-rezonans tomografiya kabi tasvirlash usullarining diagnostikadagi roli ham baholanadi.

Maqolada ichki va tashqi fiksatsiya vositalari, titan va biomos materiallardan tayyorlangan implantlar, 3D-printer yordamida yaratilgan individual protezlar hamda regenerativ tibbiyot yutuqlari haqida ma’lumot beriladi. Shu bilan birga, suyak to‘qimasining tez bitishini ta’minlovchi biologik faol moddalar, hujayra terapiyasi va o‘sish omillarining samaradorligi tahlil qilinadi. Zamonaviy davolash usullarining bemor organizmiga ta’siri, asoratlar xavfi va sog‘ayish jarayoniga ta’siri ilmiy manbalar asosida baholanadi.

Annotatsiyada, shuningdek, davolash jarayonida individual yondashuvning ahamiyati, bemorning yoshi, umumiy sog‘lig‘i, sinish turi va joylashuviga qarab optimal usul tanlash zarurligi ta’kidlanadi. Maqola natijalari tibbiyot talabalari, shifokorlar va ilmiy tadqiqotchilar uchun nazariy hamda amaliy ahamiyatga ega bo‘lib, suyak sinishlarini davolash sifatini oshirishga xizmat qiladi.
DOI: 10.5281/zenodo.18649968
title: SUYAK SINISHLARINING ZAMONAVIY DAVOLASH USULLARI

description: Suyak sinishlari zamonaviy tibbiyot amaliyotida eng ko‘p uchraydigan travmatik holatlardan biri hisoblanadi. Ular turli yosh guruhlarida, ayniqsa, bolalar, sportchilar va keksalar orasida keng tarqalgan bo‘lib, bemorlarning hayot sifati va mehnat qobiliyatiga salbiy ta’sir ko‘rsatadi. So‘nggi yillarda tibbiyot texnologiyalarining jadal rivojlanishi natijasida suyak sinishlarini davolashda innovatsion va samarali usullar ishlab chiqildi. Ushbu maqolada suyak sinishlarining zamonaviy davolash usullari, ularning afzalliklari, kamchiliklari hamda klinik amaliyotdagi ahamiyati keng yoritilgan.

Annotatsiyada suyak sinishlarining tasnifi, diagnostika usullari va davolash strategiyalarining evolyutsiyasi tahlil qilinadi. Xususan, konservativ davolash, minimal invaziv jarrohlik aralashuvlar, osteosintez texnologiyalari, biologik stimulyatorlar va reabilitatsiya usullarining o‘rni ilmiy asosda ko‘rib chiqiladi. Zamonaviy rentgen, kompyuter tomografiyasi va magnit-rezonans tomografiya kabi tasvirlash usullarining diagnostikadagi roli ham baholanadi.

Maqolada ichki va tashqi fiksatsiya vositalari, titan va biomos materiallardan tayyorlangan implantlar, 3D-printer yordamida yaratilgan individual protezlar hamda regenerativ tibbiyot yutuqlari haqida ma’lumot beriladi. Shu bilan birga, suyak to‘qimasining tez bitishini ta’minlovchi biologik faol moddalar, hujayra terapiyasi va o‘sish omillarining samaradorligi tahlil qilinadi. Zamonaviy davolash usullarining bemor organizmiga ta’siri, asoratlar xavfi va sog‘ayish jarayoniga ta’siri ilmiy manbalar asosida baholanadi.

Annotatsiyada, shuningdek, davolash jarayonida individual yondashuvning ahamiyati, bemorning yoshi, umumiy sog‘lig‘i, sinish turi va joylashuviga qarab optimal usul tanlash zarurligi ta’kidlanadi. Maqola natijalari tibbiyot talabalari, shifokorlar va ilmiy tadqiqotchilar uchun nazariy hamda amaliy ahamiyatga ega bo‘lib, suyak sinishlarini davolash sifatini oshirishga xizmat qiladi.
DOI: 10.15468/dl.mbary4
title: Occurrence Download

description: A dataset containing 208929176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2020",
 "TaxonKey is Plantae",
 "Geometry POLYGON((-11 36, 50 36, 50 67, -11 67, -11 36))"
 ]
}

 The dataset includes 208929176 records from 7692 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020606-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xz3fw
title: Occurrence Download

description: A dataset containing 220746 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arctostaphylos Adans."
 ]
}

 The dataset includes 220746 records from 739 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0243454-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7crbzh
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dipterocarpus alatus Roxb.",
 "Year 2000-2024"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066568-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yc7m5
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphidiscosida",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 68 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0257098-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.