cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1120112.10fu
title: SH1120112.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1120113.10fu
title: SH1120113.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.e83eqm
title: Occurrence Download

description: A dataset containing 417 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passeriformes"
 ]
}

 The dataset includes 417 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011706-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2v358
title: Occurrence Download

description: A dataset containing 3112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyperus distans L.f.",
 "Continent is Africa"
 ]
}

 The dataset includes 3112 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011708-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3u7wx
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Acacia podalyriifolia A.Cunn. ex G.Don"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011707-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83r5te
title: Occurrence Download

description: A dataset containing 1722 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cnemophilidae"
 ]
}

 The dataset includes 1722 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011709-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u52w2j
title: Occurrence Download

description: A dataset containing 264876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is 2023",
 "DecimalLongitude is greater than or equal to 7.38",
 "DecimalLongitude is less than or equal to 9.03",
 "DecimalLatitude is greater than or equal to 55.1",
 "DecimalLatitude is less than or equal to 56.06"
 ]
}

 The dataset includes 264876 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011687-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28706045
title: A behavioral dataset summarizing ant movement under different acoustic treatments

description: This dataset contains behavioural tracking metrics of <i>Formica rufa</i> individuals recorded during playback experiments. Each row corresponds to a trial with a unique individual, capturing values such as total distance moved (in mm), average speed (in mm/min), and path meander (a proxy for trajectory complexity). The dataset supports analyses related to ant responses to stridulation-like acoustic signals.<b>Columns:</b><code>ID</code>: Trial identifier<code>Treatment</code>: Experimental treatment condition<code>Minute</code>: Time window (in minutes)<code>Distance_moving</code>: Total distance moved (mm)<code>Average_speed_moving</code>: Average speed during movement (mm/min)<code>Meander_moving</code>: Path complexity or meander metric (unitless)
DOI: 10.6084/m9.figshare.28706045.v1
title: A behavioral dataset summarizing ant movement under different acoustic treatments

description: This dataset contains behavioural tracking metrics of <i>Formica rufa</i> individuals recorded during playback experiments. Each row corresponds to a trial with a unique individual, capturing values such as total distance moved (in mm), average speed (in mm/min), and path meander (a proxy for trajectory complexity). The dataset supports analyses related to ant responses to stridulation-like acoustic signals.<b>Columns:</b><code>ID</code>: Trial identifier<code>Treatment</code>: Experimental treatment condition<code>Minute</code>: Time window (in minutes)<code>Distance_moving</code>: Total distance moved (mm)<code>Average_speed_moving</code>: Average speed during movement (mm/min)<code>Meander_moving</code>: Path complexity or meander metric (unitless)
DOI: 10.15468/dl.pdpup6
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Thunbergia erecta (Benth.) T.Anderson"
 ]
}

 The dataset includes 31 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011710-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7d4xfu
title: Occurrence Download

description: A dataset containing 1788 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyperus erectus (Schumach.) Mattf. & Kük.",
 "Continent is Africa"
 ]
}

 The dataset includes 1788 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011712-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dh2vep
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Osmanthus heterophyllus (G.Don) P.S.Green"
 ]
}

 The dataset includes 15 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011713-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ea5kan
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyperus exaltatus Retz.",
 "Continent is Africa"
 ]
}

 The dataset includes 308 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011714-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rh2y9w
title: Occurrence Download

description: A dataset containing 76768 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lotus dorycnium L."
 ]
}

 The dataset includes 76768 records from 661 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011700-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28714226.v1
title: Supplementary Material for: Transdermal and Powdered Scopolamine-Induced Anisocoria: A Report of Two Cases

description: Introduction
In this case report, we present two cases of sudden-onset anisocoria caused by accidental exposure to scopolamine in two young female patients.
Case presentation
Two patients presented with unilateral anisocoria. One patient experienced unilateral mydriasis accompanied by neurological symptoms from a transdermal scopolamine patch, while the other, exposed to powdered scopolamine, presented with unilateral mydriasis without additional neurological symptoms. Both cases showed gradual resolution of symptoms over several days without intervention. Initially, Adie’s pupil (tonic pupil) was high in the differential diagnosis, but a comprehensive history taking revealed scopolamine exposure as the more likely cause. In the first case, pilocarpine did not result in miosis, while in the second case, pilocarpine initially induced miosis but was followed by a return to mydriasis. Although current literature suggests that mydriasis caused by an anticholinergic substance presents as pupil dilation unresponsive to pilocarpine, our case series shows its inconsistency in clinical presentation.
Conclusion 
This report presents one case of systemic scopolamine toxicity, alongside unilateral mydriasis, adding confusion to the case given the expected bilateral mydriasis in systemic toxicity, and another case of pharmacological anisocoria secondary to exposure to scopolamine with an atypical reaction to pilocarpine. These cases highlight the importance of thorough history taking and the need to consider pharmacological causes in the differential diagnosis of acute anisocoria.
DOI: 10.6084/m9.figshare.28714232
title: Supplementary Material for: Defining clinical course of patients evaluated for pediatric acute-onset neuropsychiatric syndrome (PANS): phenotypic classification based on 10 years of clinical data

description: Objective: Establishing clear and standardized terminology regarding disease state and course is crucial for enhancing communication, research, and treatment decisions, particularly when there are no clearly identified biological markers, as in the case of pediatric acute-onset neuropsychiatric syndrome (PANS). We aim to propose terminology for assessing disease state and classifying long-term clinical courses in individuals evaluated for PANS, advancing standardization in clinical care and research.

Methods: We drew upon clinical expertise, insights from similar conditions, and a decade of longitudinal clinical data from the Stanford University Immune Behavioral Health (IBH) Clinic to devise terminology for characterizing patient status and clinical progression among patients evaluated for PANS. Utilizing parent- and clinician-reported data spanning from 2012 to 2023, we constructed a comprehensive dataset documenting patients' disease trajectory from initial flare to latest clinical encounter, encompassing intervening recovery periods. This allowed us to apply the proposed terminology to the IBH Clinic patient cohort, offering a detailed phenotypic analysis of PANS flare and clinical courses.

Results: We analyzed 264 patients evaluated for PANS at the IBH Clinic and stratified them based on whether they met PANS criteria at initial flare (51%), after initial flare (24%), or had not met criteria at the time of analysis (25%). The average age at the initial flare ranged from 6.1-8.3 years across these patient sub-groups. Among patients with PANS, the average isolated flare lasted 3.7-4.1 months and 95% of flares resolved within one year. Five years after initial flare, most (77%) patients with PANS had had multiple flares, and nearly half (43%) had experienced a flare that lasted &gt; 12 months, approximately half of which occurred at the initial flare. 

Conclusions: Patients evaluated for PANS at the IBH Clinic showed diverse clinical presentations and illness courses over the long term, with most experiencing a relapsing-remitting clinical course but some exhibiting persistent symptoms. Many experienced neuropsychiatric flares before meeting PANS classification criteria. This underscores the importance of clinicians being vigilant for new neuropsychiatric symptoms in pediatric patients, even if they do not immediately meet PANS criteria. Based on these data, we propose terms and definitions for characterizing patient status, flares, and clinical course, which we hope the clinical and research communities will build on and refine.
DOI: 10.6084/m9.figshare.28714232.v1
title: Supplementary Material for: Defining clinical course of patients evaluated for pediatric acute-onset neuropsychiatric syndrome (PANS): phenotypic classification based on 10 years of clinical data

description: Objective: Establishing clear and standardized terminology regarding disease state and course is crucial for enhancing communication, research, and treatment decisions, particularly when there are no clearly identified biological markers, as in the case of pediatric acute-onset neuropsychiatric syndrome (PANS). We aim to propose terminology for assessing disease state and classifying long-term clinical courses in individuals evaluated for PANS, advancing standardization in clinical care and research.

Methods: We drew upon clinical expertise, insights from similar conditions, and a decade of longitudinal clinical data from the Stanford University Immune Behavioral Health (IBH) Clinic to devise terminology for characterizing patient status and clinical progression among patients evaluated for PANS. Utilizing parent- and clinician-reported data spanning from 2012 to 2023, we constructed a comprehensive dataset documenting patients' disease trajectory from initial flare to latest clinical encounter, encompassing intervening recovery periods. This allowed us to apply the proposed terminology to the IBH Clinic patient cohort, offering a detailed phenotypic analysis of PANS flare and clinical courses.

Results: We analyzed 264 patients evaluated for PANS at the IBH Clinic and stratified them based on whether they met PANS criteria at initial flare (51%), after initial flare (24%), or had not met criteria at the time of analysis (25%). The average age at the initial flare ranged from 6.1-8.3 years across these patient sub-groups. Among patients with PANS, the average isolated flare lasted 3.7-4.1 months and 95% of flares resolved within one year. Five years after initial flare, most (77%) patients with PANS had had multiple flares, and nearly half (43%) had experienced a flare that lasted &gt; 12 months, approximately half of which occurred at the initial flare. 

Conclusions: Patients evaluated for PANS at the IBH Clinic showed diverse clinical presentations and illness courses over the long term, with most experiencing a relapsing-remitting clinical course but some exhibiting persistent symptoms. Many experienced neuropsychiatric flares before meeting PANS classification criteria. This underscores the importance of clinicians being vigilant for new neuropsychiatric symptoms in pediatric patients, even if they do not immediately meet PANS criteria. Based on these data, we propose terms and definitions for characterizing patient status, flares, and clinical course, which we hope the clinical and research communities will build on and refine.
DOI: 10.6084/m9.figshare.12271292
title: Arrival catalog of coronal mass ejections observed with STEREO Heliospheric Imagers (HELCATS ARRCAT 2.0)

description: <b>ARRIVAL CATALOGUE 2.0</b>In this ARRival CATalog (ARRCAT), the arrivals of solar coronal mass ejections at planets and spacecraft that were tracked with the STEREO heliospheric imagers are calculated.ARRCAT lists modeled arrivals of CMEs at various spacecraft and planets, between April 2007 - February 2025, based on the HIGeoCAT catalog of CMEs established at RAL Space, UK (R. A. Harrison, J. A. Davies, D. Barnes).<b>Authors:</b><b> </b>C. Möstl (1), E. Weiler (1), E. E. Davies (1), D. Barnes (2), R. A. Harrison (2), J. A. Davies (2).<br>(1) Austrian Space Weather Office, GeoSphere Austria, Graz, Austria; (2) RAL Space, Didcot, UK.<br>We acknowledge the use of the spiceypy python packages.This is version 2.0, released 2020-May-13, updated 2025-April-2.https://doi.org/10.6084/m9.figshare.12271292It is based on this HIGeoCAT version:https://www.helcats-fp7.eu/catalogues/data/HCME_WP3_V06.votusing the SSEF30 model.The catalog is available as python pandas dataframe (pickle), python numpy arrays (pickle, as recarray and structured array),npy (numpy, no pickle), json, csv, xlsx, txt, hdf5, html athttps://helioforecast.space/arrcathttps://www.helcats-fp7.euNumber of events in ARRCAT: 3096Targets: Earth_L1, Mercury, Venus, Mars, STEREO-A, STEREO-B, Solar Orbiter, Parker Solar Probe (PSP), Bepi Colombo, Venus Expres, MESSENGER, Ulysses, JUICE, JUNO.For further description, see header file.source code: https://github.com/cmoestl/heliocats/blob/master/arrcat.ipynbRules: If results are produced with this catalog for peer-reviewed scientific publications,please contact chris.moestl@outlook.com for co-authorships.<br>
DOI: 10.15468/dl.ka4zak
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Terminalia myriocarpa Van Heurck & Müll.Arg."
 ]
}

 The dataset includes 105 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011715-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27890241
title: Metabolomics data - lean/obese MASLD - Haag et al. JCI Insight 2025;10(8):e180943

description: The table presents quantitative serum metabolomics data from a subset of 204 subjects of European descent, recruited from the Salzburg colon cancer prevention initiative (SAKKOPI) study. Metabolic dysfunction-associated steatotic liver disease (MASLD) was diagnosed based on ultrasound evidence of hepatic steatosis. Subjects were allocated into four groups: lean healthy (n=61, BMI &lt;25 kg/m<sup>2</sup>), lean MASLD (n=49, BMI &lt;25 kg/m<sup>2</sup>), obese healthy (n=47, BMI &gt;30 kg/m<sup>2</sup>) and obese MASLD (n=47, BMI &gt;30 kg/m<sup>2</sup>).Serum metabolomics data were obtained using the Biocrates Absolute IDQ p180 kit (Feldman et al. Am J Gastroenterol. 2017 Jan;112(1):102-110). Bile acids (BAs) and short-chain fatty acids (SCFAs) were quantified as described (Haag et al. Anal Bioanal Chem. 2015 Sep;407(22):6815-25; Liebisch et al. Biomolecules 2019 Mar 28;9(4):121).
DOI: 10.15468/dl.786xvn
title: Occurrence Download

description: A dataset containing 2489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyperus haspan L.",
 "Continent is Africa"
 ]
}

 The dataset includes 2489 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011716-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qdxahv
title: Occurrence Download

description: A dataset listing the 6 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Netherlands",
 "GadmGid is one of (NLD.4.70_2, NLD.4.76_1, NLD.4.14_1, NLD.4.17_1, NLD.4.64_1)",
 "TaxonKey is Squamata",
 "Year 2024-2025"
 ]
}

 The dataset's 6 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011711-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15062665
title: Spatially resolved single-cell profiling identifies MFAP5+ fibroblast-immune interactions and prognostic tumor microenvironment architectures in gastric cancer

description: This dataset contains the IMC single-cell data and code associated with Spatially resolved single-cell profiling identifies MFAP5+ fibroblast-immune interactions and prognostic tumor microenvironment architectures in gastric cancer.

This dataset contains:



Processed spatial single-cell data

Code for analysis
DOI: 10.5281/zenodo.15121014
title: Spatially resolved single-cell profiling identifies MFAP5+ fibroblast-immune interactions and prognostic tumor microenvironment architectures in gastric cancer

description: This dataset contains the IMC single-cell data and code associated with Spatially resolved single-cell profiling identifies MFAP5+ fibroblast-immune interactions and prognostic tumor microenvironment architectures in gastric cancer.

This dataset contains:



Processed spatial single-cell data

Code for analysis
DOI: 10.15468/dl.5e8u7n
title: Occurrence Download

description: A dataset containing 4727 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Halimium calycinum (L.) K.Koch"
 ]
}

 The dataset includes 4727 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011719-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2gyp9
title: Occurrence Download

description: A dataset containing 10634 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Butterflies (Lepidoptera: Lycaenidae) Occurrence Data in Sub-Saharan Africa"
 ]
}

 The dataset includes 10634 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011718-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmanxc
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is India",
 "GadmGid is IND.13_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus gerardiana Wall. ex D.Don"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011723-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.