cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11925597
title: Hypothesis Testing Methods for Multivariate Multi-Occasion Intra-Individual Change

description: In psychological and educational measurement, it is often of interest to assess change in an individual. The current study expanded on previous research by introducing methods that can evaluate individual change on multiple latent traits measured on multiple occasions. The four methods considered are the likelihood ratio test (LRT), the multivariate Wald test (MWT), the modified multivariate Wald test (MMWT), and the score test (ST). Simulation studies were conducted to examine the true positive rate (TPR) and the false positive rate (FPR) of the new methods under a conventional fixed-form test and a computerized adaptive test (CAT). Manipulated variables included the number of occasions, change magnitudes, patterns of change, and correlations between latent traits. Results revealed that, in terms of FPR, all methods except MWT had close adherence to the nominal significance level. Among the three methods, the LRT is recommended as it provided a balance between FPR and TPR. Larger change magnitude yielded higher TPR, regardless of the remaining factors. With the same test length, a CAT yielded higher TPR than a conventional test. Real-data examples are provided of identifying psychometrically significant change across two to four occasions using a multivariate adaptive self-report medical outcomes measure from hospitalized patients. The detection of significant change among the three methods agreed highly, and those patients identified as having significant change exhibited large profile differences, which provided support for the valid performance of the proposed methods.
DOI: 10.6084/m9.figshare.12968089
title: Dynamic changes of throat swabs RNA and serum antibodies for SARS-CoV-2 and their diagnostic performances in patients with COVID-19

description: Dynamic changes of RNA and antibodies in SARS-CoV-2 infected patients remain largely unknown, and influence factors for antibody production have not been fully clarified. In this study, consecutive throat swabs specimens (<i>n</i> = 1875) from 187 patients were collected to analyse the dynamic changes of RNA. Moreover, 162 serial serum samples from 31 patients were tested for seroconversion of IgM and IgG. Meanwhile, IgM and IgG were also detected in 409 COVID-19 patients and 389 controls. Additionally, the logistic regression analysis was executed to identify the possible influence factors for antibody production. The median positive conversion time for RNA was day 7 (IQR, 3–11), and the positive rate was highest in day 1–5 (74.59 %) and then gradually decreased. The median time of seroconversion for IgM and IgG were both day 12 (IQR, 10–15). The sensitivity and specificity for IgM (or IgG) was 87.04% and 96.92%, respectively. Multivariate logistic regression indicated that reduced lymphocytes and short positive conversion time for SARS-CoV-2 RNA were independent factors for negative results of IgM and IgG. In conclusion, RNA and antibodies should be combined for COVID-19 diagnosis, and delayed seroconversion was influenced by the decreased lymphocytes and short positive conversion time for RNA.
DOI: 10.6084/m9.figshare.16633029.v1
title: Additional file 1 of Potential mechanism of Ziyin Tongluo Formula in the treatment of postmenopausal osteoporosis: based on network pharmacology and ovariectomized rat model

description: Additional file 1: Table S1. The detailed information of active ingredients of ZYTLF.
DOI: 10.5281/zenodo.10684775
title: Data for "Rotation of gap nodes in the topological superconductor Cux(PbSe)5(Bi2Se3)6"

description: Raw data files for all figures presented in the paper.
DOI: 10.5281/zenodo.10684776
title: Data for "Rotation of gap nodes in the topological superconductor Cux(PbSe)5(Bi2Se3)6"

description: Raw data files for all figures presented in the paper.
DOI: 10.6084/m9.figshare.14540486
title: POU2AF1 promotes MSCs adipogenesis by inhibiting HDAC1 expression

description: Excessive production of visceral adipose is a major risk factor of many diseases. Inhibiting the adipogenesis of mesenchymal stem cells (MSCs) will be an efficient way to block adipose production. We illuminated POU class 2 homeobox associating factor 1 (POU2AF1) may promote MSCs adipogenesis by histone deacetylases 1 (HDAC1) signalling. Human retroperitoneal adipose-derived mesenchymal stem cells were isolated from overweight and control groups of patients. IncRNA microarray was used to identified gene expression levels. Adenovirus transduction and cellular small-interfering RNA transfection were used to achieve overexpression and interference of POU2AF1 or HDAC1. Adipogenesis was identified by Oil-red O staining, triglycende, cholesterol assay, real-time PCR and Western Blot. POU2AF1 expression was upregulated in retroperitoneal adipose tissue of overweight patients, and increased during adipogenesis. Overexpression of POU2AF1 promoted spontaneous adipogenesis without adipogenic treatment. Silencing of endogenous POU2AF1 in MSCs inhibited adipogenesis. Overexpression of POU2AF1 alleviated the translocation of HDAC1 to the nucleus. The mRNA level of HDAC1 was also reduced. Co-transfection of Ad-POU2AF1 and Ad-HDAC1 partially reversed the promotion effect of POU2AF1 overexpression in MSCs spontaneous adipogenic differentiation. POU2AF1 involves in the natural differentiation of human mesenchymal stem cells. Overexpression or silencing POU2AF1 could effectively induce or inhibit the adipogenesis by HDAC1 signaling.
DOI: 10.6084/m9.figshare.20307691
title: Additional file 5 of Genome-wide identification and expression analysis of the ftsH protein family and its response to abiotic stress in Nicotiana tabacum L

description: Additional file 5: Table S3. Summary of cis-elements is in the promoter regions of ftsH family genes in tobacco.
DOI: 10.6084/m9.figshare.20307697.v1
title: Additional file 7 of Genome-wide identification and expression analysis of the ftsH protein family and its response to abiotic stress in Nicotiana tabacum L

description: Additional file 7: Table S5. GO annotation of NtftsH.
DOI: 10.6084/m9.figshare.20307691.v1
title: Additional file 5 of Genome-wide identification and expression analysis of the ftsH protein family and its response to abiotic stress in Nicotiana tabacum L

description: Additional file 5: Table S3. Summary of cis-elements is in the promoter regions of ftsH family genes in tobacco.
DOI: 10.6084/m9.figshare.20307694
title: Additional file 6 of Genome-wide identification and expression analysis of the ftsH protein family and its response to abiotic stress in Nicotiana tabacum L

description: Additional file 6: Table S4. The lists of tobacco and other species ftsH synteny gene pairs.
DOI: 10.6084/m9.figshare.14541033
title: Targeting the KRAS α4-α5 allosteric interface inhibits pancreatic cancer tumorigenesis

description: <i>RAS</i> is the most frequently mutated oncogene in human cancer with nearly ~20% of cancer patients possessing mutations in one of three <i>RAS</i> genes (<i>K, N</i> or <i>HRAS</i>). However, <i>KRAS</i> is mutated in nearly 90% of pancreatic ductal carcinomas (PDAC). Although pharmacological inhibition of RAS has been challenging, KRAS(G12C)-specific inhibitors have recently entered the clinic. While KRAS(G12C) is frequently expressed in lung cancers, it is rare in PDAC. Thus, more broadly efficacious RAS inhibitors are needed for treating KRAS mutant-driven cancers such as PDAC. A RAS-specific tool biologic, NS1 Monobody, inhibits HRAS- and KRAS-mediated signalling and oncogenic transformation both <i>in vitro</i> and <i>in vivo</i> by targeting the α4–α5 allosteric site of RAS and blocking RAS self-association. Here, we evaluated the efficacy of targeting the α4-α5 interface of KRAS as an approach to inhibit PDAC development using an immunocompetent orthotopic mouse model. Chemically regulated NS1 expression inhibited ERK and AKT activation in KRAS(G12D) mutant KPC PDAC cells and reduced the formation and progression of pancreatic tumours. NS1-expressing tumours were characterized by increased infiltration of CD4 + T helper cells. These results suggest that targeting the #x3B1;4-#x3B1;5 allosteric site of KRAS may represent a viable therapeutic approach for inhibiting KRAS-mutant pancreatic tumours.
DOI: 10.15468/dl.9gxwb8
title: Occurrence Download

description: A dataset containing 429 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Larval fish at time series station Helgoland Roads, North Sea, in 2004"
 ]
}

 The dataset includes 429 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004435-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ch96bd
title: Occurrence Download

description: A dataset containing 4592 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((96.55002 16.50386,97.27866 16.50386,97.27866 17.59231,96.55002 17.59231,96.55002 16.50386))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4592 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082540-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3sygua
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cicer yamashitae Kitam."
 ]
}

 The dataset includes 48 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137829-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.klbcaf
title: Occurrence Download

description: A dataset containing 413272 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is DATAVES"
 ]
}

 The dataset includes 413272 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004435-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10972326
title: Gene regulatory network controlling flower development in spinach

description: Supplementary Data 1. KEGG pathway enrichment of DEGs involved in spinach female and male flower development. F: female; M: male.

Supplementary Data 2. Functional GO annotation of DEGs related flower development in spinach female and male flowers.

Supplementary Data 3. List of transcription factor prediction.

Supplementary Data 4. Target DEGs by floral regulators.

Supplementary Data 5. KEGG pathway enrichment of DEGs involved in spinach female, male and monoecious mature flowers.

Supplementary Data 6. Primer sequence used in this study.

Supplementary Figure 1. Significantly enriched GO terms between dioecious spinach female and male flower development. A: significantly enriched molecular function items during female flower development; B: significantly enriched biological processes items during female flower development; C: significantly enriched molecular function items during male flower development; D: significantly enriched biological processes items during male flower development.

Supplementary Figure 2. GRNs shows the main TFs involved in the development of dioecious spinach flowers. Triangle: TFs; cyan: TFs regulate meristem; magenta: TFs regulate male flower; red: TFs regulate female flower; orange: TFs regulate male and female flower. Circle: target genes. Diamond and blue front: DGEs invloved phytohormone signal transduction pathways. 

Supplementary Figure 3: GRNs shows the main TFs involved in the maturation of dioecious and monoecious flowers. Triangle: TFs; purple: TFs regulate female and monoecious flower; orange: TFs regulate monoecious and male flower; pink: TFs regulate male flower; red: TFs regulate monoecious flower. Circle: target genes. Diamond and blue front: DGEs invloved phytohormone signal transduction pathways.

Supplementary Figure 4. Differential gene expression profiles involved in phytohormone pathways in flower development.
DOI: 10.15468/dl.4x5yah
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cicer pungens Boiss."
 ]
}

 The dataset includes 112 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137818-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjacyv
title: Occurrence Download

description: A dataset containing 1709819 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Sistema de Información de la vegetación Ibérica y Macaronésica"
 ]
}

 The dataset includes 1709819 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082550-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10972325
title: Gene regulatory network controlling flower development in spinach

description: Supplementary Data 1. KEGG pathway enrichment of DEGs involved in spinach female and male flower development. F: female; M: male.

Supplementary Data 2. Functional GO annotation of DEGs related flower development in spinach female and male flowers.

Supplementary Data 3. List of transcription factor prediction.

Supplementary Data 4. Target DEGs by floral regulators.

Supplementary Data 5. KEGG pathway enrichment of DEGs involved in spinach female, male and monoecious mature flowers.

Supplementary Data 6. Primer sequence used in this study.

Supplementary Figure 1. Significantly enriched GO terms between dioecious spinach female and male flower development. A: significantly enriched molecular function items during female flower development; B: significantly enriched biological processes items during female flower development; C: significantly enriched molecular function items during male flower development; D: significantly enriched biological processes items during male flower development.

Supplementary Figure 2. GRNs shows the main TFs involved in the development of dioecious spinach flowers. Triangle: TFs; cyan: TFs regulate meristem; magenta: TFs regulate male flower; red: TFs regulate female flower; orange: TFs regulate male and female flower. Circle: target genes. Diamond and blue front: DGEs invloved phytohormone signal transduction pathways. 

Supplementary Figure 3: GRNs shows the main TFs involved in the maturation of dioecious and monoecious flowers. Triangle: TFs; purple: TFs regulate female and monoecious flower; orange: TFs regulate monoecious and male flower; pink: TFs regulate male flower; red: TFs regulate monoecious flower. Circle: target genes. Diamond and blue front: DGEs invloved phytohormone signal transduction pathways.

Supplementary Figure 4. Differential gene expression profiles involved in phytohormone pathways in flower development.
DOI: 10.15468/dl.ium1ro
title: Occurrence Download

description: A dataset containing 1728 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CASES: The pre-winter assemblages of southeastern Beaufort Sea"
 ]
}

 The dataset includes 1728 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004435-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10972436
title: T3.1 Systematic literature review dataset

description: This document presents the T3.1 Systematic Literature Review Dataset, which was collected for the VERITY project, to identify and categorise the evidenced-based approaches to tackle mistrust in science. This dataset includes reference information of 19 articles that were systematically selected by conducting the Preferred Items for Systematic Reviews and Meta-Analyses (PRISMA) search strategy.

The PRISMA strategy was driven by a rigorously designed search string, which was devised following the Population, Intervention, Comparison, Outcome (PICO) guidelines. PICO guidelines worked as our framework for creating the necessary keywords associated with society (Population), and intervention studies (Intervention) measuring trust (Comparison) in science (Outcome). We searched three databases (PubMed, Scopus, and Web of Knowledge); the search string was adjusted to correspond to the specific requirements of each database.

The search was completed on 03 May 2023 and was restricted to titles and abstracts, with no restrictions on publication date. The search strategy yielded a total of 2835 results. To proceed with PRISMA, these results were uploaded on CADIMA (www.cadima.info), an open-access web tool for conducting systematic literature reviews (see Kohl et al., 2018). After removing duplicates, 2097 studies remained for title and abstract screening. To identify the studies that used an intervention (or manipulation) to increase trust in science, title and abstract screening was based on the following pre-defined criteria:



abstract written in a language that can be understood by reviewers (English or Greek)

involve trust of any kind

include an intervention (either measuring trust pre- vs. post-intervention or between an experimental vs. control group)

original piece of research (present primary data)

focus on science.


Through title and abstract screening, 1846 records were excluded. Respectively, 251 records followed to the next PRISMA phase, that of full-text screening. Full-text screening was guided by the following three criteria:



investigation of people's trust in science

investigation of a manipulation designed to influence people's (mis)trust

typically developed and healthy (control) sample.


The reasons of these adjustments were twofold: first, full-text screening requires stricter criteria that reflect the objectives of the task, and second, some pre-set exclusion options are already provided by CADIMA (full-text not-available/assessable, duplicate, no-primary data presented). Following these criteria, full-text screening excluded 232 records. As such, 19 studies were identified that were eligible for the purpose of this report of identifying and categorising strategies, methods, and tools that intervene on societal (mis)trust in science.
DOI: 10.15468/dl.zgwwbp
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cicer spiroceras Jaub. & Spach"
 ]
}

 The dataset includes 21 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137825-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10972435
title: T3.1 Systematic literature review dataset

description: This document presents the T3.1 Systematic Literature Review Dataset, which was collected for the VERITY project, to identify and categorise the evidenced-based approaches to tackle mistrust in science. This dataset includes reference information of 19 articles that were systematically selected by conducting the Preferred Items for Systematic Reviews and Meta-Analyses (PRISMA) search strategy.

The PRISMA strategy was driven by a rigorously designed search string, which was devised following the Population, Intervention, Comparison, Outcome (PICO) guidelines. PICO guidelines worked as our framework for creating the necessary keywords associated with society (Population), and intervention studies (Intervention) measuring trust (Comparison) in science (Outcome). We searched three databases (PubMed, Scopus, and Web of Knowledge); the search string was adjusted to correspond to the specific requirements of each database.

The search was completed on 03 May 2023 and was restricted to titles and abstracts, with no restrictions on publication date. The search strategy yielded a total of 2835 results. To proceed with PRISMA, these results were uploaded on CADIMA (www.cadima.info), an open-access web tool for conducting systematic literature reviews (see Kohl et al., 2018). After removing duplicates, 2097 studies remained for title and abstract screening. To identify the studies that used an intervention (or manipulation) to increase trust in science, title and abstract screening was based on the following pre-defined criteria:



abstract written in a language that can be understood by reviewers (English or Greek)

involve trust of any kind

include an intervention (either measuring trust pre- vs. post-intervention or between an experimental vs. control group)

original piece of research (present primary data)

focus on science.


Through title and abstract screening, 1846 records were excluded. Respectively, 251 records followed to the next PRISMA phase, that of full-text screening. Full-text screening was guided by the following three criteria:



investigation of people's trust in science

investigation of a manipulation designed to influence people's (mis)trust

typically developed and healthy (control) sample.


The reasons of these adjustments were twofold: first, full-text screening requires stricter criteria that reflect the objectives of the task, and second, some pre-set exclusion options are already provided by CADIMA (full-text not-available/assessable, duplicate, no-primary data presented). Following these criteria, full-text screening excluded 232 records. As such, 19 studies were identified that were eligible for the purpose of this report of identifying and categorising strategies, methods, and tools that intervene on societal (mis)trust in science.
DOI: 10.15468/dl.lfy6p0
title: Occurrence Download

description: A dataset containing 8126 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence of Skipper butterflies (Lepidoptera:Hesperiidae) in Invertebrate Zoology Collection at National Museums of Kenya"
 ]
}

 The dataset includes 8126 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007667-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sijneh
title: Occurrence Download

description: A dataset containing 8755 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Brunei Darussalam",
 "Country is Malaysia",
 "Country is Singapore",
 "Country is Indonesia",
 "Country is Philippines",
 "Country is Timor-Leste",
 "Country is Papua New Guinea"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Hymenophyllaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8755 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004435-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.