cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/sydspd32jw.1
title: Continuous HIV-1 Escape from Autologous Neutralization and Development of Cross-Reactive Antibody Responses Characterizes Slow Disease Progression of Children

description: Kinetics of the autologous and heterologous neutralizing antibody (Nab) responses, in addition to antibody-dependent cellular
cytotoxicity (ADCC), in HIV-1 infected children with different disease progression rates followed from close after birth and five years on. Autologous and heterologous neutralization were determined by Peripheral blood mononuclear cells (PBMC)- and TZMbl-based assays, and ADCC was assessed with the GranToxiLux assay. Nabs directed against the transmitted virus developed usually within 12 months of age in children with slow progression, but rarely in rapid progressors. Autologous Nabs persisted throughout the follow-up of the slow progressors and induced a continuous emergence of escape variants. Persistent autologous Nabs triggering viral escape and an increase in the breadth and potency of cross-Nabs are exclusive to HIV-1 infected slowly progressing children. Titers of antibodies mediating ADCC to gp120 BaL pulsed target cells increased in slow progressors during follow-up.  doi: 10.3390/vaccines9030260.
DOI: 10.5517/ccdc.csd.cc28xz8g
title: CCDC 2113216: Experimental Crystal Structure Determination

description: Related Article: Mohanakumaran Athira, Suresh Snoxma Smile, Ponnusamy Shanmugam|2022|New J.Chem.|46|2952|doi:10.1039/D1NJ05379E
DOI: 10.5281/zenodo.6016580
title: natural resource ontology

description: Some natural resources in owl ontology.
DOI: 10.5281/zenodo.6016579
title: natural resource ontology

description: Some natural resources in owl ontology.
DOI: 10.34725/dvn/chv9eh
title: Baseline dataset on uptake of sustainable land management practices, adherence to agroforestry concession guidelines and other household variables

description: This dataset is the baseline of the project Piloting approaches to rural advisory services in support of scaling of the Agroforestry Concessions scheme in Peru (PARA), which is currently being implemented by ICRAF (World Agroforestry). This project aims to determine which Rural Advisory Services (RAS) model generates greater adherence and permanence to the agroforestry concessions that the Peruvian state intends to implement. For this purpose, it will compare two treatments and a control group. The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The database includes general information on the agricultural unit (size, tenure, land use, problems, practices, and innovations), household income composition, access to agricultural services, intra-household dynamics, etc. In addition, information on the trees and forest products derived from each land use (crops, pastures, pastures, forest plantations, and forests) is detailed. The database is composed of 6 files, 1 file at the household level and 5 files at the level of each of the land uses.
DOI: 10.34725/dvn/chv9eh/xzmxj3
title: PARA_baseline_hh_fallow_label_etiquetado_Diccionario.tab

description: The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The dataset it is compose of six files, one file at the household level and five files at the level of each of the land uses the household can have (crops, pastures, pastures, forest plantations, and forests), where information at this level is detail. The key variable that joins/merge the files is “hh_code”
DOI: 10.34725/dvn/chv9eh/hqxd8l
title: PARA_baseline_hh_wood_label_etiquetado_Diccionario.tab

description: The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The dataset it is compose of six files, one file at the household level and five files at the level of each of the land uses the household can have (crops, pastures, pastures, forest plantations, and forests), where information at this level is detail. The key variable that joins/merge the files is “hh_code”
DOI: 10.34725/dvn/chv9eh/zmeoop
title: PARA_baseline_hh.tab

description: The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The dataset it is compose of six files, one file at the household level and five files at the level of each of the land uses the household can have (crops, pastures, pastures, forest plantations, and forests), where information at this level is detail. The key variable that joins/merge the files is “hh_code”
DOI: 10.34725/dvn/chv9eh/voxl4t
title: PARA_baseline_hh_label_etiquetado_Diccionario.tab

description: The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The dataset it is compose of six files, one file at the household level and five files at the level of each of the land uses the household can have (crops, pastures, pastures, forest plantations, and forests), where information at this level is detail. The key variable that joins/merge the files is “hh_code”
DOI: 10.34725/dvn/chv9eh/4xcxwm
title: PARA_baseline_hh_wood.tab

description: The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The dataset it is compose of six files, one file at the household level and five files at the level of each of the land uses the household can have (crops, pastures, pastures, forest plantations, and forests), where information at this level is detail. The key variable that joins/merge the files is “hh_code”
DOI: 10.34725/dvn/chv9eh/76kmuy
title: PARA_baseline_hh_forest_label_etiquetado_Diccionario.tab

description: The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The dataset it is compose of six files, one file at the household level and five files at the level of each of the land uses the household can have (crops, pastures, pastures, forest plantations, and forests), where information at this level is detail. The key variable that joins/merge the files is “hh_code”
DOI: 10.34725/dvn/chv9eh/k3s21k
title: PARA_baseline_hh_crop.tab

description: The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The dataset it is compose of six files, one file at the household level and five files at the level of each of the land uses the household can have (crops, pastures, pastures, forest plantations, and forests), where information at this level is detail. The key variable that joins/merge the files is “hh_code”
DOI: 10.34725/dvn/chv9eh/qotyfz
title: PARA_baseline_hh_pasture_label_etiquetado_Diccionario.tab

description: The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The dataset it is compose of six files, one file at the household level and five files at the level of each of the land uses the household can have (crops, pastures, pastures, forest plantations, and forests), where information at this level is detail. The key variable that joins/merge the files is “hh_code”
DOI: 10.34725/dvn/chv9eh/lgqs90
title: PARA_baseline_hh_pasture.tab

description: The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The dataset it is compose of six files, one file at the household level and five files at the level of each of the land uses the household can have (crops, pastures, pastures, forest plantations, and forests), where information at this level is detail. The key variable that joins/merge the files is “hh_code”
DOI: 10.34725/dvn/chv9eh/dxbhky
title: PARA_baseline_hh_crop_label_etiquetado_Diccionario.tab

description: The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The dataset it is compose of six files, one file at the household level and five files at the level of each of the land uses the household can have (crops, pastures, pastures, forest plantations, and forests), where information at this level is detail. The key variable that joins/merge the files is “hh_code”
DOI: 10.34725/dvn/chv9eh/m4klnw
title: PARA_baseline_hh_fallow.tab

description: The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The dataset it is compose of six files, one file at the household level and five files at the level of each of the land uses the household can have (crops, pastures, pastures, forest plantations, and forests), where information at this level is detail. The key variable that joins/merge the files is “hh_code”
DOI: 10.34725/dvn/chv9eh/yh3ils
title: PARA_baseline_final_printable.pdf

description: :unav
DOI: 10.34725/dvn/chv9eh/mmhyer
title: PARA_baseline_hh_forest.tab

description: The dataset unit of analysis is household and contains a total of 1,070 observations of 45 villages. The dataset it is compose of six files, one file at the household level and five files at the level of each of the land uses the household can have (crops, pastures, pastures, forest plantations, and forests), where information at this level is detail. The key variable that joins/merge the files is “hh_code”
DOI: 10.5281/zenodo.6006660
title: 3D Adjoint tomography model of the Italian lithosphere

description: The project IMAGINE_IT (PI Dr. Dimitri Komatitsch) received 40 million CPU-hours on the Tier-0 GENCI/TGCC CURIE supercomputer as a winner of the 9<sup>th</sup> PRACE consortium call (2014). The awarded computational resources allowed us to construct a new 3D tomographic model for the Italian lithosphere, <em>Im25</em>,<em> </em>by combining spectral-element three-dimensional wavefield simulations and an adjoint-state method. To obtain the final model <em>Im25, </em>we performed 25 adjoint tomography iterations and two source inversion iterations for the initial wavespeed model and an intermediate one. The 3D model <em>Im25</em> resolves P- and S-wavespeed values in the Italian lithosphere for frequencies up to ~0.1 Hz (i.e., periods down to ~10 s). It provides improved images of the subsurface of the peninsula and its neighborhood, highlighting the complex structure of the Adriatic plate on the east of the Italian coast, the debated plumbing system of Mount Etna volcano, and the distribution of fluids and gas (CO<sub>2</sub>) in correlation with the Italian seismicity. The obtained <em>V<sub>p</sub></em> and <em>V<sub>s</sub></em><sub> </sub>models are in agreement with high resolution models developed by classical tomography studies in Italy at local scale, and the retrieved <em>V<sub>p</sub></em>/<em>V<sub>s</sub></em> values correspond to the interpretations on fluids and gas distribution in the Italian subsurface from studies in various geophysical fields. The <em>V<sub>s</sub></em> <em>Im25</em> model also compares favorably with <em>V<sub>s</sub></em> profiles extracted from other studies that use different techniques and datasets, and focus on specific zones of Italy. The provided dataset contains the values of <em>V</em><sub><em>p</em></sub> and <em>V<sub>s</sub></em> (in m/s) for model <em>Im25</em> at each point of the geometrical grid used to discretize the study volume.
DOI: 10.5281/zenodo.6006659
title: 3D Adjoint tomography model of the Italian lithosphere

description: The project IMAGINE_IT (PI Dr. Dimitri Komatitsch) received 40 million CPU-hours on the Tier-0 GENCI/TGCC CURIE supercomputer as a winner of the 9<sup>th</sup> PRACE consortium call (2014). The awarded computational resources allowed us to construct a new 3D tomographic model for the Italian lithosphere, <em>Im25</em>,<em> </em>by combining spectral-element three-dimensional wavefield simulations and an adjoint-state method. To obtain the final model <em>Im25, </em>we performed 25 adjoint tomography iterations and two source inversion iterations for the initial wavespeed model and an intermediate one. The 3D model <em>Im25</em> resolves P- and S-wavespeed values in the Italian lithosphere for frequencies up to ~0.1 Hz (i.e., periods down to ~10 s). It provides improved images of the subsurface of the peninsula and its neighborhood, highlighting the complex structure of the Adriatic plate on the east of the Italian coast, the debated plumbing system of Mount Etna volcano, and the distribution of fluids and gas (CO<sub>2</sub>) in correlation with the Italian seismicity. The obtained <em>V<sub>p</sub></em> and <em>V<sub>s</sub></em><sub> </sub>models are in agreement with high resolution models developed by classical tomography studies in Italy at local scale, and the retrieved <em>V<sub>p</sub></em>/<em>V<sub>s</sub></em> values correspond to the interpretations on fluids and gas distribution in the Italian subsurface from studies in various geophysical fields. The <em>V<sub>s</sub></em> <em>Im25</em> model also compares favorably with <em>V<sub>s</sub></em> profiles extracted from other studies that use different techniques and datasets, and focus on specific zones of Italy. The provided dataset contains the values of <em>V</em><sub><em>p</em></sub> and <em>V<sub>s</sub></em> (in m/s) for model <em>Im25</em> at each point of the geometrical grid used to discretize the study volume.
DOI: 10.17632/cnwdr8yrmt.1
title: CXCL10 levels at hospital admission predict COVID-19 outcome- hierarchical assessment of 53 putative inflammatory biomarkers in an observational study

description: 10.1186/s10020-021-00390-4
DOI: 10.25345/c5fg58
title: MassIVE MSV000088810 - Functional protein composition in femoral glands of sand lizards (Lacerta agilis)
title: Proteins are ubiquitous macromolecules displaying a vast repertoire of chemical and enzymatic functions making them suitable candidates for chemosignals used in intraspecific communication. Proteins are present in skin gland secretions of vertebrates but their identity, and especially, their functions, remain largely unknown. Many species of lizards possess femoral glands, i.e. epidermal organs primarily involved in the production and secretion of chemosignals playing a pivotal role in mate choice and intrasexual communication. The lipophilic fraction of femoral glands has been well studied in lizards. In contrast, proteins have been the focus of only a handful of investigations. Here, we study the identity, inter-individual expression patterns and functionality of proteins present in femoral glands of sand lizards (Lacerta agilis) by applying mass-spectrometry proteomics. Our results showed that the total number of proteins varied substantially among individuals. None of the identified femoral gland proteins could be directly linked to chemical communication in lizards, although this result hinges on protein annotation in databases in which squamate semiochemicals are poorly represented. In contrast to our expectations, proteins consistently expressed across individuals were related to immune system, antioxidant activity and lipid metabolism as the main functions, adding support to the hypothesis that proteins in reptilian epidermal glands have other functions besides chemical communication. Interestingly, we found that major histocompatibility complex class I (MHC) expression is enriched in femoral gland secretions. Previously, MHC was hypothesized to have been coopted to serve a semiochemical function in sand lizards, specifically in partner recognition. We speculate with the possibility that MHC proteins could be linked to semiochemical function in sand lizards.
DOI: 10.5281/zenodo.6033653
title: transcription of females without aphasia

description: A transcription of a re-telling of a story of a cartoon "Shaun the Sheep" within exploring the relationship between speech and gestures in persons with aphasia: Evidence from the Czech perspective.
description: seven females, age 20-40, without aphasia
DOI: 10.5281/zenodo.6033652
title: transcription of females without aphasia

description: A transcription of a re-telling of a story of a cartoon "Shaun the Sheep" within exploring the relationship between speech and gestures in persons with aphasia: Evidence from the Czech perspective.
description: seven females, age 20-40, without aphasia
DOI: 10.5281/zenodo.6033681
title: transcription of males without aphasia

description: A transcription of a re-telling of a story of a cartoon "Shaun the Sheep" within exploring the relationship between speech and gestures in persons with aphasia: Evidence from the Czech perspective.
description: five males, age 20-40, without aphasia
DOI: 10.5281/zenodo.6033680
title: transcription of males without aphasia

description: A transcription of a re-telling of a story of a cartoon "Shaun the Sheep" within exploring the relationship between speech and gestures in persons with aphasia: Evidence from the Czech perspective.
description: five males, age 20-40, without aphasia
DOI: 10.6084/m9.figshare.19152779
title: Differences in brain morphology of brown trout across stream, lake, and hatchery environment

description: The trade-off between cognitive capacity and developmental costs drive brain size and morphology across fish species, but this pattern is less explored at intraspecific level. Physical habitat complexity has been proposed as a selection pressure on cognitive capacity that shapes brain morphology of fishes, but development of brain is also inherently linked to supply of energy and nutrients, particularly of omega-3 long-chain polyunsaturated fatty acids (n-3 LC-PUFA). In this study, we compared brain morphology of brown trout <i>Salmo trutta</i> from stream, lake, and hatchery environments, which differ in physical complexity and availably of dietary n-3 LC-PUFA ranging from low habitat complexity and high n-3 LC-PUFA availability in hatchery to high habitat complexity and low n-3 LC-PUFA availability in streams. We found that brain size, and size of optic tectum and telencephalon differed across the three habitats, being largest in lake fish. We suggest that these differences appeared to associate with diet quality and habitat specific behavioural adaptations rather than physical habitat complexity.
DOI: 10.5281/zenodo.6033723
title: Content Validity and Reliability of the Italian Language Version of the US National Cancer Institute's Patient-Reported Outcomes version of the Common Terminology Criteria for Adverse Events (PRO-CTCAE®)

description: <strong>ABSTRACT </strong> <strong>Introduction: </strong>The US National Cancer Institute’s (NCI) Patient-Reported Outcomes version of the Common Terminology Criteria for Adverse Events (PRO-CTCAE<sup>®</sup>) is a library of 78 symptom terms and 124 items enabling patient reporting of symptomatic adverse events in cancer trials. This multicenter study used mixed methods to develop an Italian language version of this widely accepted measure, and evaluate content validity and reliability in a diverse sample of Italian-speaking patients. <strong>Methods: </strong>All PRO-CTCAE items were translated in accordance with international guidelines. Subsequently, the content validity of the PRO-CTCAE-Italian was examined and iteratively refined through cognitive debriefing interviews. Participants (n=96; 52% male; median age 64 years; 26% older adults; 18% lower educational attainment) completed a PRO-CTCAE survey and participated in a semi-structured interview to determine if the translation captured the concepts of the original English language PRO-CTCAE, and to evaluate comprehension, clarity and ease of judgement. Test-retest reliability of the finalized measure was evaluated in a second sample (n=135). <strong>Results: </strong>Four rounds of cognitive debriefing interviews were conducted. The majority of PRO-CTCAE symptom terms, attributes and associated response choices were well-understood, and respondents found the items easy to judge. To improve comprehension and clarity, the symptom terms for nausea and pain were rephrased and retested in subsequent interview rounds. Test-retest reliability was excellent for 41/49 items (84%); the median intraclass correlation coefficient was 0.83 (range 0.64-0.94). <strong>Discussion: </strong>Results support the semantic, conceptual and pragmatic equivalence of PRO-CTCAE-Italian to the original English version, and provide preliminary evidence of content validity and reliability.
DOI: 10.5281/zenodo.6033722
title: Content Validity and Reliability of the Italian Language Version of the US National Cancer Institute's Patient-Reported Outcomes version of the Common Terminology Criteria for Adverse Events (PRO-CTCAE®)

description: <strong>ABSTRACT </strong> <strong>Introduction: </strong>The US National Cancer Institute’s (NCI) Patient-Reported Outcomes version of the Common Terminology Criteria for Adverse Events (PRO-CTCAE<sup>®</sup>) is a library of 78 symptom terms and 124 items enabling patient reporting of symptomatic adverse events in cancer trials. This multicenter study used mixed methods to develop an Italian language version of this widely accepted measure, and evaluate content validity and reliability in a diverse sample of Italian-speaking patients. <strong>Methods: </strong>All PRO-CTCAE items were translated in accordance with international guidelines. Subsequently, the content validity of the PRO-CTCAE-Italian was examined and iteratively refined through cognitive debriefing interviews. Participants (n=96; 52% male; median age 64 years; 26% older adults; 18% lower educational attainment) completed a PRO-CTCAE survey and participated in a semi-structured interview to determine if the translation captured the concepts of the original English language PRO-CTCAE, and to evaluate comprehension, clarity and ease of judgement. Test-retest reliability of the finalized measure was evaluated in a second sample (n=135). <strong>Results: </strong>Four rounds of cognitive debriefing interviews were conducted. The majority of PRO-CTCAE symptom terms, attributes and associated response choices were well-understood, and respondents found the items easy to judge. To improve comprehension and clarity, the symptom terms for nausea and pain were rephrased and retested in subsequent interview rounds. Test-retest reliability was excellent for 41/49 items (84%); the median intraclass correlation coefficient was 0.83 (range 0.64-0.94). <strong>Discussion: </strong>Results support the semantic, conceptual and pragmatic equivalence of PRO-CTCAE-Italian to the original English version, and provide preliminary evidence of content validity and reliability.