cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.24378/exe.264
title: The collapse of a molecular cloud core to stellar densities using radiation non-ideal magnetohydrodynamics (dataset)

description: We present results from radiation non-ideal magnetohydrodynamics (MHD) calculations that follow the collapse of rotating, magnetized, molecular cloud cores to stellar densities. These are the first such calculations to include all three non-ideal effects: ambipolar diffusion, Ohmic resistivity, and the Hall effect. We employ an ionization model in which cosmic ray ionization dominates at low temperatures and thermal ionization takes over at high temperatures. We explore the effects of varying the cosmic ray ionization rate from ζcr = 10−10 to 10−16 s−1. Models with ionization rates ≳10−12 s−1 produce results that are indistinguishable from ideal MHD. Decreasing the cosmic ray ionization rate extends the lifetime of the first hydrostatic core up to a factor of 2, but the lifetimes are still substantially shorter than those obtained without magnetic fields. Outflows from the first hydrostatic core phase are launched in all models, but the outflows become broader and slower as the ionization rate is reduced. The outflow morphology following stellar core formation is complex and strongly dependent on the cosmic ray ionization rate. Calculations with high ionization rates quickly produce a fast (≈14 km s−1) bipolar outflow that is distinct from the first core outflow, but with the lowest ionization rate, a slower (≈3−4 km s−1) conical outflow develops gradually and seamlessly merges into the first core outflow.
description: This is all the data created for Wurster, Bate & Price (2018a). This dataset was created using the SPHMD code sphNH, which included v1.2.1 of the NICIL library (Wurster 2016) to calculate the non-ideal MHD coefficients. The data and important files have been uploaded; the data files can be read with either sphNG, or with the graphics programme Splash. The file are named such that number at the end of `collapse' indicates the negative of the cosmic ray ionisation rate. If this number is followed by `a` or `b', then this data set was created to reproduce data accidentally deleted from the primary set without the 'a'. If it is followed by 'imp', it uses the implicit resistivity. The subsequent two numbers are the dump numbers contained within this file. If the subsequent term is 'sup', then this is the supplementary material, including executables, plotting scripts, etc... The data for the aligned model and implicit model will be uploaded in a latter data set.
description: The article associated with this dataset is located in ORE at: http://hdl.handle.net/10871/31265
DOI: 10.24378/exe.308
title: The effect of metallicity on the atmospheres of exoplanets with fully coupled 3D hydrodynamics, equilibrium chemistry, and radiative transfer (dataset)

description: In this work we have performed a series of simulations of the atmosphere of GJ 1214b assuming different metallicities using the Met Office Unified Model (UM). The UM is a general circulation model (GCM) that solves the deep, nonhydrostatic equations of motion and uses a flexible and accurate radiative transfer scheme, based on the two-stream and correlated-k approximations, to calculate the heating rates. In this work we consistently couple a well-tested Gibbs energy minimisation scheme to solve for the chemical equilibrium abundances locally in each grid cell for a general set of elemental abundances, further improving the flexibility and accuracy of the model. As the metallicity of the atmosphere is increased we find significant changes in the dynamical and thermal structure, with subsequent implications for the simulated phase curve. The trends that we find are qualitatively consistent with previous works, though with quantitative differences. We investigate in detail the effect of increasing the metallicity by splitting the mechanism into constituents, involving the mean molecular weight, the heat capacity and the opacities. We find the opacity effect to be the dominant mechanism in altering the circulation and thermal structure. This result highlights the importance of accurately computing the opacities and radiative transfer in 3D GCMs.
description: DC100 - 100x Solar metallicity - dynamical effect and heat capacity
description: DC10 - 10x Solar metallicity - dynamical effect and heat capacity
description: D10.tar.gz - 10x Solar metallicity - dynamical effect
description: D100.tar.gz - 100x Solar metallicity - dynamical effect
description: R100.tar.gz - 100x Solar metallicity
description: R10.tar.gz - 10x Solar metallicity
description: R1.tar.gz - Solar metallicity
description: The data contained in this submission is associated with the publication Drummond et al, A&A, 2018.
description: The article associated with this dataset is located in ORE at: http://hdl.handle.net/10871/30831
DOI: 10.24378/exe.309
title: Design and fabrication of plasmonic cavities for magneto-optical sensing (dataset)

description: This is the dataset used for the Loughran et al. (2018) article "Design and fabrication of plasmonic cavities for magneto-optical sensing" published in AIP Advances.
description: This dataset includes the COMSOL modelling files, raw spectra data, raw MOKE data, and the processed data.
description: The article associated with this dataset is located in ORE at: http://hdl.handle.net/10871/33084
DOI: 10.24378/exe.323
title: Simulating the cloudy atmospheres of HD 209458 b and HD 189733 b with the 3D Met Office Unified Model (dataset)

description: This is the dataset used for the Lines et al. (2018) article "Simulating the cloudy atmospheres of HD 209458 b and HD 189733 b with the 3D Met Office Unified Model" published in the Astronomy and Astrophysics journal.
description: All of the Global Circulation Model data output, covering 100 days of clouds on HD189733b and HD209458b.
description: The article associated with this dataset is located in ORE at: http://hdl.handle.net/10871/31772
DOI: 10.24378/exe.585
title: Microscope calibration using laser written fluorescence (dataset)

description: This is the dataset used for the Corbett et al. (2018) article "Microscope calibration using laser written fluorescence" published in Optics Express.
description: Microscopy image data composed of two zip files: SIM_image_data.zip contains 222 .TIF files that form an image stack. As the sample is very sparse, most of these appear blank. The files format has been chosen to be as universally accessible as possible. Loading these files into (freely available) ImageJ for example will allow the 3D sample data to be examined. The second file is confocal_image_data.zip and contains three folders corresponding to 3 different samples containing very similar (and equally sparse) data.
description: The article associated with this dataset is located in ORE at: http://hdl.handle.net/10871/33695
DOI: 10.24378/exe.307
title: Observable signatures of wind-driven chemistry with a fully consistent three dimensional radiative hydrodynamics model of HD 209458b (dataset)

description: We present a study of the effect of wind-driven advection on the chemical composition of hot Jupiter atmospheres using a fully-consistent 3D hydrodynamics, chemistry and radiative transfer code, the Met Office Unified Model (UM). Chemical modelling of exoplanet atmospheres has primarily been restricted to 1D models that cannot account for 3D dynamical processes. In this work we couple a chemical relaxation scheme to the UM to account for the chemical interconversion of methane and carbon monoxide. This is done consistently with the radiative transfer meaning that departures from chemical equilibrium are included in the heating rates (and emission) and hence complete the feedback between the dynamics, thermal structure and chemical composition. In this letter we simulate the well studied atmosphere of HD 209458b. We find that the combined effect of horizontal and vertical advection leads to an increase in the methane abundance by several orders of magnitude; directly opposite to the trend found in previous works. Our results demonstrate the need to include 3D effects when considering the chemistry of hot Jupiter atmospheres. We calculate transmission and emission spectra, as well as the emission phase curve, from our simulations. We conclude that gas-phase non-equilibrium chemistry is unlikely to explain the model–observation discrepancy in the 4.5 μm Spitzer/IRAC channel. However, we highlight other spectral regions, observable with the James Webb Space Telescope, where signatures of wind-driven chemistry are more prominant.
description: rt_u-as329 - tracer experiment
description: rt_u-as361 - transmission - equilibrium
description: rt_u-as298 - transmission -relaxation
description: rt_u-ar698 - emission - equilibrium
description: rt_u-ar697 - emission - relaxation
description: rt_u-ar586 - relaxation
description: rt_u-ar412 - equilibrium
description: tf_u-ar475 - start from spun up winds
description: tf_u-ar354 - resolution 96X60X33 start from spun up winds
description: tf_u-ar333 - resolution 72X45X33 start from spun up winds
description: tf_u-aq931 - timescale x 1e-8
description: tf_u-aq930 - timescale x 1e-4
description: tf_u-aq815 - resolution 72X45X33
description: tf_u-aq814 - resolution 96X60X33
description: tf-u-aq801 - chemical equilibrium
description: tf_u-aq557 - standard Cooper and Showman 2006
description: tf_u-aq800 - Initialise all carbon in CO
description: The data contained in this submission is associated with the publication Drummond et al, ApJL, 2018.
description: The article associated with this dataset is located in ORE at: http://hdl.handle.net/10871/31897
DOI: 10.24378/exe.563
title: Reliable, resilient and sustainable urban drainage systems: an analysis of robustness under deep uncertainty (dataset)

description: This is the dataset used for the Casal-Campos et al. (2018) article "Reliable, resilient and sustainable urban drainage systems: an analysis of robustness under deep uncertainty" published in Environmental Science and Technology (ES&T).
description: The article associated with this dataset is located in ORE at: http://hdl.handle.net/10871/33480
DOI: 10.24378/exe.584
title: Strong beaming of microwave surface waves with complementary split-ring-resonator arrays (dataset)

description: A thin copper sheet, populated by an array of complementary split ring resonators, presents strong surface wave beaming in orthogonal directions at two distinct frequencies. This simple array is significantly thinner than existing single frequency beaming surfaces. The observed beaming frequencies are associated with the two lowest resonance modes of the split rings, and the beams are subwavelength in width and approximately non-diverging. The beaming is analysed through comparison of near-field scans of the surface-normal electric fields with numerical simulations.
description: Raw data from the vector network analyser in the form of amplitude and phase for all frequencies for the whole 2D scan. For each frequency data may be reduced to the form of a 2D plot and this may then be Fourier transformed to give the final figures used in the Young et al. (2018) article "Strong beaming of microwave surface waves with complementary split-ring-resonator arrays" published in Scientific Reports.
description: The article associated with this dataset is located in ORE at: http://hdl.handle.net/10871/33689
DOI: 10.5519/qd.s6p9wqxg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (33 records)
DOI: 10.57841/casdc.0001839
title: 干态及润滑工况下离子氮化35CrMo钢微动磨损机理研究
DOI: 10.5517/ccdc.csd.cc29zfb2
title: CCDC 2144404: Experimental Crystal Structure Determination

description: Related Article: Shuping Duan, Ya Xu, Jian Zhou, Zunhong Xiao, Hua-Hong Zou|2022|Dalton Trans.|51|6876|doi:10.1039/D2DT00251E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29zfd4
title: CCDC 2144406: Experimental Crystal Structure Determination

description: Related Article: Shuping Duan, Ya Xu, Jian Zhou, Zunhong Xiao, Hua-Hong Zou|2022|Dalton Trans.|51|6876|doi:10.1039/D2DT00251E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25345/c5np1wv4k
title: MassIVE MSV000092664 - Cross-link MS analysis of human 26S proteasome in complex with RPN13:UCHL5 (without substrate).
title: Cross-link MS analysis of human 26S proteasome in complex with RPN13:UCHL5 without added substrate.
DOI: 10.5281/zenodo.8251712
title: Simulated reads

description: Simulated reads used in the validation of MetaMobilePicker and investigating the assembly performance on the assembly of MGEs and ARGs.
DOI: 10.5281/zenodo.8251711
title: Simulated reads

description: Simulated reads used in the validation of MetaMobilePicker and investigating the assembly performance on the assembly of MGEs and ARGs.
DOI: 10.23729/79408074-f680-421f-9230-c749d7b00eaa
title: Reference databases for Lazypipe project

description: Reference databases for metagenomic NGS analysis. Project repository: https://bitbucket.org/plyusnin/lazypipe/src/master/ Project website: https://www2.helsinki.fi/en/projects/lazypipe NCBI NT: Database: Minimap index for NCBI NT archaea, bacteria and viruses. 17'673'705 sequences, 392'552'172'949 bp. File: minimap.nt.abv.2023_05_16.tar.gz Database: Minimap index for NCBI NT viruses. 9'326'301 sequences, 194'755'318'770 bp. File: minimap.nt.vi.2023_06_16.tar.gz Database: BLASTN index for NCBI NT archaea and bacteria. 8'347'404 sequences, 197'796'854'179 bp. File: blast.nt.ab.2023_05_16.tar.gz Database: BLASTN index for NCBI NT viruses. 9,326,301 sequences, 194,755,318,770 bp. File: blast.nt.vi.2023_05_16.tar.gz RefSeq: Database: Minimap index for RefSeq archaea, bacteria and viruses. 202'371 sequences, 150'389'307'001 bp. File: minimap.refseq.release219.tar.gz Database: Minimap index for RefSeq viruses. 18'689 sequences, 551'600'706 bp. File: minimap.refseq.release219.tar.gz Database: BLASTN index for RefSeq archaea and bacteria. 183,682 sequences, 149,837,706,295 bp. File: blast.refseq.ab.release219.tar.gz Database: BLASTN index for RefSeq viruses. 18,689 sequences, 551,600,706 bp. File: blast.refseq.vi.release2019.tar.gz UniRef100: Database: BLASTP index for UniRef100 archaea and bacteria. 148,440,747 sequences, 47,899,033,773 bp. File: blast.uniref100.ab.2023_06_28.tar.gz Database: BLASTP index for UniRef100 viruses. 3,034,688 sequences and 1,132,717,918 bp. File: blast.uniref100.vi.2023_06_28.tar.gz Citing: Plyusnin, Ilya, Olli Vapalahti, Tarja Sironen, Ravi Kant, and Teemu Smura. “Enhanced Viral Metagenomics with Lazypipe 2.” Viruses 15, no. 2 (February 4, 2023): 431. https://doi.org/10.3390/v15020431.
DOI: 10.2905/d67eeda8-c03e-4421-95d0-0adc460b9658
title: GHG Emissions at sub-national level

description: Greenhouse Gas Emissions at sub-national level (NUTS2)
DOI: 10.17028/rd.lboro.23966415
title: Supplementary information files for Increased North Atlantic dust deposition linked to Holocene Icelandic glacier fluctuations

description: Supplementary files for article Increased North Atlantic dust deposition linked to Holocene Icelandic glacier fluctuationsMineral dust concentrations are coupled to climate over glacial-interglacial cycles with increased dust deposition occurring during major cold phases over the last ~100 ka. Holocene records suggest considerable spatial and temporal variability in the magnitude, frequency and timing of dust peaks that reflects regional or local drivers of dust emissions and transport. Here, we present stratigraphical, geochemical and isotopic evidence for dust deposition from two high-resolution peat sequences 200 km apart in northern Scotland spanning the last c. 8200 years. εNd isotope data suggest the dominant minerogenic dust source switches between a low latitude (likely Saharan) and a high latitude, Icelandic source. Marked peaks in increased minerogenic dust deposition at: c. 5.4–5.1, 4.0–3.9, 2.8–2.6, 1.0 and 0.3 ka BP occur against a backdrop of low dust deposition during the mid-Holocene (c. 5.0–4.0 ka BP) and increased background levels of dust during the neoglacial period (&lt;4.0 ka BP). These dust peaks coincide with periods of glacial advance in Iceland and heightened storminess in the North Atlantic. Isotope data for additional dust peaks at c. 1.0 and 0.7 ka BP and the last ~50 years suggest these reflect increased dust from the Sahara associated with aridity and land-use change in North Africa during the Late-Holocene, and modern anthropogenic sources. This work highlights the complexity of Holocene records of dust deposition in the North Atlantic and emphasises the role of dynamic sub-Polar glaciers and their meltwater systems as a significant dust source.
DOI: 10.17028/rd.lboro.23966415.v1
title: Supplementary information files for Increased North Atlantic dust deposition linked to Holocene Icelandic glacier fluctuations

description: Supplementary files for article Increased North Atlantic dust deposition linked to Holocene Icelandic glacier fluctuationsMineral dust concentrations are coupled to climate over glacial-interglacial cycles with increased dust deposition occurring during major cold phases over the last ~100 ka. Holocene records suggest considerable spatial and temporal variability in the magnitude, frequency and timing of dust peaks that reflects regional or local drivers of dust emissions and transport. Here, we present stratigraphical, geochemical and isotopic evidence for dust deposition from two high-resolution peat sequences 200 km apart in northern Scotland spanning the last c. 8200 years. εNd isotope data suggest the dominant minerogenic dust source switches between a low latitude (likely Saharan) and a high latitude, Icelandic source. Marked peaks in increased minerogenic dust deposition at: c. 5.4–5.1, 4.0–3.9, 2.8–2.6, 1.0 and 0.3 ka BP occur against a backdrop of low dust deposition during the mid-Holocene (c. 5.0–4.0 ka BP) and increased background levels of dust during the neoglacial period (&lt;4.0 ka BP). These dust peaks coincide with periods of glacial advance in Iceland and heightened storminess in the North Atlantic. Isotope data for additional dust peaks at c. 1.0 and 0.7 ka BP and the last ~50 years suggest these reflect increased dust from the Sahara associated with aridity and land-use change in North Africa during the Late-Holocene, and modern anthropogenic sources. This work highlights the complexity of Holocene records of dust deposition in the North Atlantic and emphasises the role of dynamic sub-Polar glaciers and their meltwater systems as a significant dust source.
DOI: 10.5523/bris.dn7ra6z7uats2asgp5k401te4
title: The relationship between body dissatisfaction and attentional bias to thin bodies in Malaysian Chinese and White Australian women: A dot probe study.

description: This study used a cross-sectional design to investigate the relationship between body dissatisfaction and attentional bias towards thin bodies. We recruited 150 Malaysian Chinese women in Malaysia and 150 White Australian women in Australia. However, for the Malaysian Chinese participants, we did not obtain explicit consent to share their data. This repository therefore contains real data for the 150 White Australian participants and synthetic data for the 150 Malaysian Chinese participants.
DOI: 10.6084/m9.figshare.23714748
title: Supplementary Material for: Orbital complications and cost analysis of enucleation by myoconjunctival versus conventional techniques for retinoblastoma

description: Introduction: To compare complication rates and hospital costs of myoconjunctival versus conventional enucleation techniques in retinoblastoma. Methods: This retrospective cohort and cost analysis reviewed patients with retinoblastoma treated by primary or secondary enucleation between 2003-2021 and a minimum 6-month follow-up. Cases were reviewed for three post-surgical complications: chronic conjunctivitis, implant exposure/extrusion, and cellulitis. Cases were excluded if surgery was performed elsewhere or documentation was incomplete. Treatment costs were estimated based on two sample cases billed in 2021 that manifested the studied complications and represented each of the two surgical techniques. Univariate and multivariate analyses were applied to compare complication rates and treatment costs. Results: Included were 180 eyes (179 patients); 140 were excluded. Patients were median age 18.9 (0-104.4) months at diagnosis, the majority male (94, 52%), with unilateral (115, 64%) Group D or E (163, 91%) eyes. Enucleation was performed by conventional techniques in 107 eyes (59%) and by myoconjunctival approach in 73 (41%). Orbital complications occurred in 61 eyes (34%) during a median follow-up of 7.9 (0.5-33.7) years, more frequently in the conventional technique group (p=0.014). The myoconjunctival technique had significantly lower costs for implant price (p&lt;0.001) and estimated treatment cost, including complication management (p&lt;0.001). Conclusion: Enucleation by myoconjunctival technique showed significantly less complication burden and treatment cost, indicating advantages over conventional approaches. Study limitations include the retrospective nature, confounders' complexity, and follow-up time variations.
DOI: 10.6084/m9.figshare.23714748.v1
title: Supplementary Material for: Orbital complications and cost analysis of enucleation by myoconjunctival versus conventional techniques for retinoblastoma

description: Introduction: To compare complication rates and hospital costs of myoconjunctival versus conventional enucleation techniques in retinoblastoma. Methods: This retrospective cohort and cost analysis reviewed patients with retinoblastoma treated by primary or secondary enucleation between 2003-2021 and a minimum 6-month follow-up. Cases were reviewed for three post-surgical complications: chronic conjunctivitis, implant exposure/extrusion, and cellulitis. Cases were excluded if surgery was performed elsewhere or documentation was incomplete. Treatment costs were estimated based on two sample cases billed in 2021 that manifested the studied complications and represented each of the two surgical techniques. Univariate and multivariate analyses were applied to compare complication rates and treatment costs. Results: Included were 180 eyes (179 patients); 140 were excluded. Patients were median age 18.9 (0-104.4) months at diagnosis, the majority male (94, 52%), with unilateral (115, 64%) Group D or E (163, 91%) eyes. Enucleation was performed by conventional techniques in 107 eyes (59%) and by myoconjunctival approach in 73 (41%). Orbital complications occurred in 61 eyes (34%) during a median follow-up of 7.9 (0.5-33.7) years, more frequently in the conventional technique group (p=0.014). The myoconjunctival technique had significantly lower costs for implant price (p&lt;0.001) and estimated treatment cost, including complication management (p&lt;0.001). Conclusion: Enucleation by myoconjunctival technique showed significantly less complication burden and treatment cost, indicating advantages over conventional approaches. Study limitations include the retrospective nature, confounders' complexity, and follow-up time variations.