cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.sk512/14
title: Supporting Movie S2.

description: Same as Movie S1, nuclei labeled with histone GFP.
DOI: 10.5061/dryad.sk512/6
title: Supporting Movie S6.

description: Same as Movie S3, with original time interval between frame (5 min), zoomed on the back.
DOI: 10.5061/dryad.sk512/7
title: Supporting Movie S7.

description: Same as Movie S3 (time interval between frames: 6 min). After four hours (corresponding to the missing image at the 10th second of the current movie), CK666 is added; lamellipodia (both cryptic and front ones) are no longer detectable.
DOI: 10.5061/dryad.sk512/8
title: mitomycin_data

description: mitomycin_data is a folder where velocity data are stored in the mitomycin drug case.
DOI: 10.5061/dryad.sk512/9
title: kymographs_mitomycin

description: kymographs_mitomycin is a folder where velocity kymographs are stored in the mitomycin case.
DOI: 10.5061/dryad.sk5sv1q/1
title: GerchenEtAl_AmNat

description: Genotyping data of green toads of the North-Italian and the Sicilian hybrid zone
DOI: 10.5061/dryad.sq8d0/1
title: Genotype file for Canine HD array from 24 dingoes (bed)

description: Illumina CanineHD SNP data from 24 dingoes. In PLINK binary format (.bed, .bim and .fam).
DOI: 10.5061/dryad.sq8d0/2
title: Marker file for CanineHD array from 24 dingoes (bim)

description: .bim file for CanineHD array data from 24 dingoes. Created in PLINK.
DOI: 10.5061/dryad.sq8d0/3
title: Sample file for CanineHD array from 24 dingoes (fam)

description: .fam file for CanineHD array from 24 dingoes. Created in PLINK.
DOI: 10.5061/dryad.vj2nn/1
title: African wolf and Ethiopian wolf localities

description: Location of African wolf and Ethiopian wolf in respect to the buffer and core zone of the study area, Guassa mountains
DOI: 10.5061/dryad.vj2nn/2
title: Ethiopian wolf-African wolf interaction-INT1

description: African wolf-Ethiopian wolf interaction: Key for each of  activity is given in the second sheet of the excel.
DOI: 10.5061/dryad.1q0s4gf/1
title: PlantagoMetabolomics_EnviroData_final

description: Data from UPLC-Qtof-MS for damaged and undamaged leaves from the weed Plantago major. Includes meta data collected in the field and used for analyses. Metabolomic data is untargeted and each potential metabolite is denoted by RetentionTIme_mass.
DOI: 10.5061/dryad.2929bs2/1
title: Fig1C_raw.tif

description: This file, named “Fig1C_raw.tif”, contains raw image data for Figure 1C. It contains 4 channels, 8 zstacks,
and 130 time points. The tif file can be read in Image J software.
DOI: 10.5061/dryad.2929bs2/2
title: meta_fig2de

description: meta_fig2de.mat is the data obtained by image processing without droplet area estimation. It is used for Figure 2D and 2E.
DOI: 10.5061/dryad.2929bs2/3
title: meta_fig2fg

description: meta_fig2fg.mat is the data obtained by image processing with droplet area estimation. It is used for
Fig 2F and 2G.
DOI: 10.5061/dryad.2b6b43k/3
title: SNPs_Validation_FG_fish_species

description: This file contains information about SNPs genotyped with the MassARRAY technology for each of 18 fish species from French Guiana. The composition of the four SNP multiplexes built for each species, primer pairs, and the list of successfully genotyped markers are provided. The molecular resources provided here were developed from samples collected in collaboration with the National Amazonian Park in French Guiana, under the contract R&D_2003_06 and with ethical consideration defined in the convention APA-973-7.
DOI: 10.5061/dryad.36j49h1/1
title: TSDB (2E, 2E)-4,4-trisulfanediylbis(but-2-enoic acid)
DOI: 10.5061/dryad.39c3k/1
title: Raw_SNP_data
DOI: 10.5061/dryad.39c3k/2
title: Structure_SNP_data
DOI: 10.5061/dryad.39c3k/3
title: 64_ind_29504_SNPs

description: Dataset used for calculating genome diversity parameters
DOI: 10.5061/dryad.39c3k/4
title: 44_ind_29504_SNPs

description: Dataset applied in the genome-wide association studies
DOI: 10.5061/dryad.39c3k/5
title: 76_ind_8_SNPs

description: Dataset used in the validation of genome-wide association studies
DOI: 10.5061/dryad.39c3k/6
title: GWAS_TB_standard_44

description: GWAS summary statistics for infected vs infected MTC individuals
DOI: 10.5061/dryad.39c3k/7
title: GWAS_TB_stratified_44

description: GWAS summary statistics for stratified analysis of infected vs. uninfected MTC individuals
DOI: 10.5061/dryad.39c3k/8
title: GWAS_TB_standard_76

description: GWAS summary statistics for the validation test between infected vs. uninfected MTC individuals
DOI: 10.5061/dryad.41dh5/2
title: Mimics files Ligulalepis
DOI: 10.5061/dryad.44s3k14/1
title: matrix_MLGs_microsat_24_loci

description: microsatellite genotyping at 24 loci for the samples used in this study. Population, population ID (with distinction of S-shallow and D-deep populations), Latitude, Longitude and multilocus genotypes are shown.  -9 indicates missing data
DOI: 10.5061/dryad.4nm5sh4/1
title: D1_Metadata_Samples

description: Sample information
DOI: 10.5061/dryad.4nm5sh4/2
title: D2_OTUcounts

description: OTU count table for all samples after amplicon processing prior data cleaning.
DOI: 10.5061/dryad.4nm5sh4/3
title: D3_OTUreferenceSequences

description: Centroid reference sequence for each OTU.
DOI: 10.5061/dryad.4nm5sh4/4
title: D4_OTUTaxonomy

description: Taxonomic classification of OTUs based on RDP and SILVA database and closest hit to bee 16S sequences.
DOI: 10.5061/dryad.5tg4sv6/1
title: Caterpillar parasitism & plant defense gene expression
DOI: 10.5061/dryad.6bn74m7/1
title: Tree swallow maternal immunization data
DOI: 10.5061/dryad.6bn74m7/2
title: Tree swallow maternal immunization hatching success data
DOI: 10.5061/dryad.6bn74m7/3
title: Tree swallow maternal immunization fledging success data
DOI: 10.5061/dryad.6qh0qf1.2
title: Data from: Convergence on dental simplification in the evolution of whales
DOI: 10.5061/dryad.6qh0qf1.2/1.2
title: PeredoetalFigureS1_2col-01

description: Supplementary Figure S1
DOI: 10.5061/dryad.6qh0qf1.2/2.2
title: Final Models

description: 3D models of cetacean teeth used in this analysis, oriented and simplified to 10,000 faces as outlines in the Methods section.
DOI: 10.5061/dryad.825kr16/1
title: Sample Key
DOI: 10.5061/dryad.825kr16/2
title: ReadMeFile

description: A file which explains how to use the other files and data provided in this submission.
DOI: 10.5061/dryad.825kr16/4
title: Files For Analysis
DOI: 10.5061/dryad.843372d/1
title: NuchePascual_yellowtail_bulk_CSIA_AA_TEFs

description: Nitrogen stable isotopes data of bulk and AA-specific measurements corresponding to: (a) initial composition of the fish muscle and liver tissue prior to the start of the experiment (time 0); (b) the final composition of muscle and liver tissue (day 98); (c) the formulated feeds and the commerciaal diet that was used as a reference.
DOI: 10.5061/dryad.b2t08b6/1
title: Meta-anaylsis_DRYAD.docx
DOI: 10.5061/dryad.dc25730/1
title: Results of taxonomic assignments

description: A taxon by site matrix, made after MOTU assignment to the reference database. For taxa described at the genus level or higher, the number of included species is indicated within parentheses.
DOI: 10.5061/dryad.dc25730/2
title: MOTUs table

description: A MOTU by PCR replicate matrix.
DOI: 10.5061/dryad.dc25730/3
title: Sequence reference database

description: File containing the sequence reference database for Guianese freshwater fish species.
DOI: 10.5061/dryad.dk4t694/1
title: Tree size, seed trap, natural plot and experimental plot data for Dryobalanops lanceolata in Borneo

description: This xlsx workbook contains four worksheets that encompass the complete dataset for all analyses described in the paper. These include tree size measurements, seed trap data, and seed germination and seedling survival data from natural and experimental plots.
DOI: 10.5061/dryad.g183842/1
title: Raw data

description: Raw data table with palynological countings of 715 samples from the maar lake of Messel, Germany (core Messel2001).
DOI: 10.5061/dryad.g183842/2
title: Supplementary Material

description: Includes Supplementary Table 1: Complete list of palynomorphs from the maar lake of Messel including their systematic affinities; description for calculation of phase shifts and phase wheels; Supplementary Table 2: List of five clusters taken from Lenz et al. (2011, 2015) and their palynomorph content; Supplementary Figures 1 and 2: Alpha diversity eccentricity and precession modulations; Supplementary  Tables 3 - 6: Phase shift calculations between the amplitude modulations of alpha diversity and palynomorph clusters for short eccentricity and precession.
DOI: 10.5061/dryad.mk69rg6/1
title: Field samples with covariates

description: Field samples from Kansas of Rhopalosiphum padi, Schizaphis graminum, Sitobion avena, and Barley yellow dwarf virus with covariates.
DOI: 10.5061/dryad.mk69rg6/2
title: all covariates for predictions

description: Spatio-temporal covariates used to make predictive maps across the state of Kansas.
DOI: 10.5061/dryad.n102b1s/10
title: A6 H4 ESD Prevalence in Sept and Oct Juveniles and Adult Males

description: Test of hypothesis 4
DOI: 10.5061/dryad.n102b1s/9
title: A5 H3 ESD induces molting

description: Test of hypothesis 3
DOI: 10.5061/dryad.nf57p95/1
title: DataFile

description: This file contains the main results from the analysis of stem turnover, aboveground biomass and woody productivity from 50 permanent forest plots in Venezuela. The file includes coordinates of site location, main environmental characteristics, the scores of the first two PCA axes from a Principal Component Analysis, values of stem turnover (recruitment and mortality) and forest structure.
DOI: 10.5061/dryad.nf57p95/2
title: Vilanova_RScript_PONE_Final

description: R script used for the analysis and preparation of figures related to the publication.
DOI: 10.5061/dryad.s114355/10
title: Vg_Vg-like_sequences

description: Fasta file containing all sequnces used to contruct phylogenetic tree
DOI: 10.5061/dryad.s114355/11
title: CHC_analysis

description: This datafile contains the results of the CHC analysis of brood carers and foragers from Vg-like A knockdown or control colonies
DOI: 10.5061/dryad.sk512/15
title: Supporting Movie S3.

description: Merge of phase-contrast image showing cell contours (Movie S1) in purple, and nuclei labeled with histone GFP (Movie S2) in green.
DOI: 10.5061/dryad.v80vs77/1
title: Supplementary dataset 6.1

description: txt format fle for the maximum parsimony analysis
DOI: 10.5061/dryad.v80vs77/2
title: Supplementary dataset 6.2

description: xlsx format fle for the pollen data
DOI: 10.5061/dryad.vj2nn/3
title: Mole rat survey

description: Mole rat survey on random plots
DOI: 10.5061/dryad.vj2nn/4
title: Rodent Abundance data

description: Results from rodent trapping
DOI: 10.5061/dryad.vj2nn/5
title: Rodent diversity-buffer to core area

description: Four scripts used in this paper 1) interaction outcomes, 2) rodent abundance and 3) mole rat abundance in core area compared to the buffer zone
DOI: 10.5061/dryad.14v3m13/1
title: HatchlingAnalyses

description: Dataset with row for every egg/hatchling produced in the experiment
DOI: 10.5061/dryad.20r509g/1
title: Combined_data_Home_and_Havre_Dryad_Eleanor_Velasquez_6_3_18

description: This file contains data collected on the presence of marine invertebrates attached to floating pumice which washed ashore on the east coast of Australia and islands in the Pacific. This occurred following two marine volcano eruption events. The Home reef eruption occurred in 2006 and the Havre in 2012. Both events were used so that we could compare and contrast the differences and similarities between the two.
DOI: 10.5061/dryad.2q2h5/1
title: females

description: “Female.xlsx”

Box = Identity of nest box
Idfemale = Identity of female
Femage = female age; 2 = a female in her second calendar year etc.
Female temp = Female body temperature
Year = 1 denotes 2010 and 2 denotes 2011
Exp = Experimental category; 1 = enlarged, 2 = control, 3 = reduced broods
Brood = Number of nestlings in the brood after manipulation
Amb temp = Maximum ambient temperature
Day = The age of the nestlings when the female body temperature was measured
DOI: 10.5061/dryad.2q2h5/2
title: males

description: “Male.xlsx”

Box = Identity of nest box
Idmale = Identity of male
Maleage = male age; 2 = a male in his second calendar year etc.
Male temp = Male body temperature
Year = 1 denotes 2010 and 2 denotes 2011
Exp = Experimental category; 1 = enlarged, 2 = control, 3 = reduced broods
Brood = Number of nestlings in the brood after manipulation
Amb temp = Maximum ambient temperature
Day = The age of the nestlings when the male body temperature was measured
DOI: 10.5061/dryad.2q2h5/3
title: inter-reading

description: “Inter-reading.xlsx”

Box = Identity of nest box
Sex = Sex of the bird; 1 = male; 2 = female
Diff. = The difference between the first and the third body temperature reading
DOI: 10.5061/dryad.2s25t0g/1
title: EGF final modelling data

description: File incorporating all predictor and naturalization success data available for EGF species for use in naturalization success modelling
DOI: 10.5061/dryad.2s25t0g/2
title: gbif_extraction

description: R code for extracting coordinate data for species presence points found in gbif and cropping them to appropriate regions
DOI: 10.5061/dryad.2s25t0g/3
title: code_for_model_reduction

description: R code for univariate model testing and saturated model reduction
DOI: 10.5061/dryad.2s25t0g/4
title: EGF_term_selection_12062017

description: File explaining final model term selection (saturated model reduction)
DOI: 10.5061/dryad.2s25t0g/5
title: whoisnext_chronogram_sp_polytomy1

description: Phylogenetic tree for species used in manuscript, built using GenBank sequences and following Roquet et al. (2012). The tree was resolved at the genus level, and species were included as polytomies.
DOI: 10.5061/dryad.39c3k/10
title: GWAS_Season_standard_44

description: GWAS summary statistics of 2002/06 vs. 2009/12 seasons
DOI: 10.5061/dryad.39c3k/11
title: GWAS_Season_stratified_44

description: GWAS summary statistics of stratified analysis for 2002/06 vs. 2009/12 seasons.
DOI: 10.5061/dryad.39c3k/12
title: GWAS_Season_standard_76

description: GWAS summary statistics for the validation test between 2002/06 vs. 2009/12 seasons.
DOI: 10.5061/dryad.39c3k/13
title: GWAS_Season_stratified_76

description: GWAS summary statistics for the validation test, stratified analysis, between 2002/06 vs. 2009/12 seasons.
DOI: 10.5061/dryad.39c3k/9
title: GWAS_TB_stratified_76

description: GWAS summary statistics for the validation test, stratified analysis, between infected vs. uninfected MTC individuals
DOI: 10.5061/dryad.3kv50/1
title: Gorton_UrbanMS_Dryad

description: This zip file contains all data files and R code used for analyses in Gorton et al. 2018 "Little plant, big city: a test of adaptation to urban environments in common ragweed (Ambrosia artemisiifolia)". Each R script has meta-data at the top of each script.
DOI: 10.5061/dryad.44v9r82/1
title: Golden eagle movement data

description: The file includes the time series of the four variables required to fit the state-space model for the classification of eagle behaviour. Altitude (in meters), step length (in meters) and turning angle (in radians) were derived from GPS data, while hierarchical slope position was computed using package spatialEco in R and based on ground elevation data obtained from the Global Multi-resolution Terrain Elevation Data 2010 at 30-arc-second spatial resolution (data available from the U.S. Geological Survey: https://earthexplorer.usgs.gov/). Measurements are reported for each minute, together with the ID of the corresponding track segment.
DOI: 10.5061/dryad.67sf15d/1
title: Appendix - 1

description: This file correspond to tables from PCA analysis of main manuscript. There are three tables with captions.
DOI: 10.5061/dryad.67sf15d/2
title: Appendix - 2

description: This file represent a complementary PCA anlysis between chemical data from fossil and mineral species. There are  a paragraph about study description, one figure and three tables of analysis.
DOI: 10.5061/dryad.6qh0qf1.1
title: Data from: Convergence on dental simplification in the evolution of whales
DOI: 10.5061/dryad.6qh0qf1.1/1.1
title: PeredoetalFigureS1_2col-01

description: Supplementary Figure S1
DOI: 10.5061/dryad.6qh0qf1/2
title: Final Models

description: 3D models of cetacean teeth used in this analysis, oriented and simplified to 10,000 faces as outlines in the Methods section.
DOI: 10.5061/dryad.7ns4pk2/1
title: Individual measurement data from transplant experiement 1 using wild-caught Astatotilapia burtoni transplanted to the lake habitat

description: SL - standard length, TL - total length, W -weight, m- male, f - female, ? - unknown, KaL - Kalambo lake, Ka2 - Kalambo river upstream
DOI: 10.5061/dryad.9dr6j0c/1
title: Root-associated fungi from Greenland

description: Fungal ITS2 sequence data of root-associated fungi from Greenland in fasta format. DNA extracted from different plant species roots collected along the altitudinal gradient of Aucella mountain in the Zackenberg valley.
DOI: 10.5061/dryad.cv74242/1
title: Readme_SexMarkersInSkink_Hilletal2018
DOI: 10.5061/dryad.cv74242/2
title: SNPs_SexMarkersInSkink_Hilletal2018
DOI: 10.5061/dryad.cv74242/3
title: PA_SexMarkersInSkink_Hilletal2018
DOI: 10.5061/dryad.dc25730/10
title: Analyse R script

description: A R script of the analyses conducted in the manuscrit.
DOI: 10.5061/dryad.dc25730/4
title: Run1

description: Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file; 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated.
DOI: 10.5061/dryad.dc25730/5
title: Run2

description: Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file; 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated.
DOI: 10.5061/dryad.dc25730/6
title: Run3

description: Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file; 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated
DOI: 10.5061/dryad.dc25730/7
title: Run4

description: Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file; 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer sequence associated
DOI: 10.5061/dryad.dc25730/8
title: Sampling site data

description: A table with 1) site name, 2) drainage basin belonging, 3) coordinates, 4) dates of traditional and eDNA sampling, 5) sample PCR code and 6) site map number.
DOI: 10.5061/dryad.dc25730/9
title: Results of traditional sampling

description: A species by site occurence matrix, obtained from traditional sampling on each site.
DOI: 10.5061/dryad.f8q8qf5/1
title: genotypes_mice.gen

description: Genotypes of 13 microsatellite markers for 768 samples.
DOI: 10.5061/dryad.f8q8qf5/2
title: environmental_data.xls

description: Data used for modelling the association between environmental variables and genetic variation measured as probability of each individual (n = 752) to be assigned to Cluster 1 (based on STRUCTURE with K = 2, please see Figure 3 and Table 3).
DOI: 10.5061/dryad.kq54bc5/1
title: combined martix of ITS and structural characters
DOI: 10.5061/dryad.kq54bc5/2
title: description of qualitative data characterstataes
DOI: 10.5061/dryad.kq54bc5/3
title: qualitative character codes of structural caharacters belonging to Turkish orchids
DOI: 10.5061/dryad.kq54bc5/4
title: Species information and ITS genbank numbers
DOI: 10.5061/dryad.n0vf77m/1
title: BedassleModel_code

description: Zip file containing all the R and STAN code required to fun the Bedassle-like spatial and environmental covariance models for the SNP data.
DOI: 10.5061/dryad.sc1156g/1
title: Bottle bioassay Data - CDC

description: These are data from the CDC bioassays to assess phenotypic resistance. Each sheet is a different population. AS is the resistant population, FAS is the intermediate (mixture) population, and F is the susceptible population. 50 and 500 are the larval densities.
DOI: 10.5061/dryad.sc1156g/2
title: kdr genotypes

description: These are the kdr genotypes for ~30 individuals per population/treatment/replicate combination. AS = resistant population; F= susceptible; FAS=mixture. Cys is the genotype for F1534C and Ile is the genotype for V1016I.
DOI: 10.5061/dryad.sc1156g/3
title: Development time

description: These are data on development time from 1st instar to adult. AS= resistant population, F=susceptible, and FAS= mixture. 50 and 500 represent the larval densities.
DOI: 10.5061/dryad.td0j2r8/1
title: Developmental traits

description: Data file including the treatments, families and all the traits measured during development, such as molting dates, average duration of each larval instar in days, average final body mass and standard error, growth rate, number of dead larvae per petri dish. Model response variables are highlighted in red color.
DOI: 10.5061/dryad.td0j2r8/2
title: Body mass

description: Raw data including final larval body mass of single individuals, from which the average body mass used in the paper was calculated.
DOI: 10.5061/dryad.vj72f.1
title: Data from: The tonic immobility test: do wild and captive Golden Mantella frogs (Mantella aurantiaca) have the same response?
DOI: 10.5061/dryad.vj72f.1/1.1
title: Mantella_TI

description: Data on TI responses from captive and wild golden mantella
DOI: 10.5061/dryad.vj72f.2
title: Data from: The tonic immobility test: do wild and captive Golden Mantella frogs (Mantella aurantiaca) have the same response?
DOI: 10.5061/dryad.vj72f.2/1.2
title: Mantella_TI

description: Data on TI responses from captive and wild golden mantella
DOI: 10.5061/dryad.vj72f.2/2.2
title: SVL_GoldenMantellas

description: Golden Mantellas' length measurements
DOI: 10.5061/dryad.124hj21/1
title: RTI
DOI: 10.5061/dryad.14v3m13/2
title: MomAvgs

description: Each row represents a mother from the experiment, and has summary data about that mother (e.g. size, average mass of eggs produced)
DOI: 10.5061/dryad.26077/1
title: Collated raw data
DOI: 10.5061/dryad.2s25t0g/10
title: Naturalization_data

description: File merging European garden Flora species with GloNAF.

Sheets contained in file:

"Matrix": EGF species and their presence in each glonaf region

"RegionData": Data for each glonaf region (i.e. continent of origin)
DOI: 10.5061/dryad.2s25t0g/11
title: gbif_point_count

description: File indicating number of presence points available for EGF species

Variable names and descriptions:

Species_EGF: EGF species
Number of Presence Points in GBIF: Number of presence points available
DOI: 10.5061/dryad.2s25t0g/6
title: tss_max_threshold_20092017

description: File containing tss scores for all 10 folds of cross-validation.
DOI: 10.5061/dryad.2s25t0g/7
title: Calculating TSS scores

description: R code for K-fold cross validation of final model of naturalization success
DOI: 10.5061/dryad.2s25t0g/8
title: Climate suitability modeling code

description: R code for deriving climatic suitability values from biomod2 models
DOI: 10.5061/dryad.2s25t0g/9
title: Nursery_data

description: File aligning EGF species with van der veken et al. 2008 nursery sales data
DOI: 10.5061/dryad.31tk592/1
title: SNPs data

description: Allele frequencies of the 47 sites at 1123 neural SNPs loci
DOI: 10.5061/dryad.4gf1qb7/1
title: Host_Resistance_Phenotypes

description: Host Resistance Phenotypes
DOI: 10.5061/dryad.4gf1qb7/2
title: Virus_Densities

description: as particles per ml
DOI: 10.5061/dryad.4gf1qb7/3
title: Algal_Densities

description: as cells per ml
DOI: 10.5061/dryad.567q0h9/1
title: JEB Dryad file Graham et al 2018

description: There are four worksheets in the file. The first two contain the measurements for male and female song types (each sex is in a separate sheet) which were used in the MANOVA analysis. The third and fourth sheets contain all of the data used for Redundancy analysis. Again males and females were put into separate sheets.