cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22637611
title: Proteome Discoverer Mass Spectrometry analysis of SH-SY5Y Acetylcholinesterase cleavage peptide (T30) vs control (H2O)

description: Proteomic analysis of cells exposed to (100nM) T30 (an Acetylcholinesterase derived peptide) for 3-days compared to control (H2O).
DOI: 10.25810/6ah7-dr67
title: Raw Data for Cavity-Mediated Collective Momentum-Exchange Interactions

description: This is the dataset for the manuscipt "Cavity-Mediated Colletice Momentum-Exchange Interactions".

Here is the abstract for the paper:

Quantum simulation and sensing hold great promise for providing new insights into nature, from understanding complex interacting systems to searching for undiscovered physics. Large ensembles of laser-cooled atoms interacting via infinite-range photon mediated interactions are a powerful platform for both endeavours. Here, we realize for the first time momentum-exchange interactions in which atoms exchange their momentum states via collective emission and absorption of photons from a common cavity mode. The momentum-exchange interaction leads to an observed all-to-all Ising-like interaction in a matter-wave interferometer, which is useful for entanglement generation. A many-body energy gap also emerges, effectively binding interferometer matter-wave packets together to suppress Doppler dephasing, akin to Mössbauer spectroscopy. The tunable momentum-exchange interaction provides a new capability for quantum interaction-enhanced matter-wave interferometry and for realizing exotic behaviors including simulations of superconductors and dynamical gauge fields.
DOI: 10.6084/m9.figshare.22637605
title: Data for "Proposal of an algorithm-independent definition of effective contour length (EL) and its impacts on pixel-scale specific catchment area (SCA)"

description: This dataset is used for the paper of "Proposal of an algorithm-independenat definition of effective contour length (EL) and its impacts on pixel-scale specific catchment area (SCA)". Therein, 'ellipsoid.txt', 'inverse ellipsoid.txt' and 'Saddle.txt' record the DEMs discretized from ellipsoid, inverse ellipsoid and saddle, respectively. 'Real-world DEM' records the DEM of the YiLuo River basin with a horizontal resolution of 100m and vertical resolution of 1m
DOI: 10.5281/zenodo.6386047
title: Dataset for: Intracellular carbon storage by microorganisms is an overlooked pathway of biomass growth

description: Dataset and code for the publication: Intracellular carbon storage by microorganisms is an overlooked pathway of biomass growth<br> Mason-Jones, K., Breidenbach, A., Dyckmans, J., Banfield, C.C., Dippold, M.A.<br> Nature Communications<br> 2023<br> <br> Article DOI: 10.1038/s41467-023-37713-4
description: We gratefully acknowledge the laboratory assistance provided by Kali Middleby, Andrew Gall, Lydia Köbele and Karin Schmidt. We gratefully acknowledge the financial support of the Deutscher Akademischer Austauschdienst (DAAD; 91525994) for a fellowship supporting the experimental work (KMJ), the Dutch Research Council (NWO) for funding of the Veni project VI.Veni.202.086 (KMJ) and the Open Access Publication Fund of the University of Tübingen (K.M.J.). This work is associated to the DFG Priority Program 2322 SoilSystems, project EcoEnergeticS (DFG DI 2136/17-1; MAD). We thank the staff of the core projects of the SPP and the scientific committee for establishing the SPP project.
DOI: 10.5281/zenodo.6386046
title: Dataset for: Intracellular carbon storage by microorganisms is an overlooked pathway of biomass growth

description: Dataset and code for the publication: Intracellular carbon storage by microorganisms is an overlooked pathway of biomass growth<br> Mason-Jones, K., Breidenbach, A., Dyckmans, J., Banfield, C.C., Dippold, M.A.<br> Nature Communications<br> 2023<br> <br> Article DOI: 10.1038/s41467-023-37713-4
description: We gratefully acknowledge the laboratory assistance provided by Kali Middleby, Andrew Gall, Lydia Köbele and Karin Schmidt. We gratefully acknowledge the financial support of the Deutscher Akademischer Austauschdienst (DAAD; 91525994) for a fellowship supporting the experimental work (KMJ), the Dutch Research Council (NWO) for funding of the Veni project VI.Veni.202.086 (KMJ) and the Open Access Publication Fund of the University of Tübingen (K.M.J.). This work is associated to the DFG Priority Program 2322 SoilSystems, project EcoEnergeticS (DFG DI 2136/17-1; MAD). We thank the staff of the core projects of the SPP and the scientific committee for establishing the SPP project.
DOI: 10.3886/e188961
title: Drought-reliefs and Partisanship

description: Partisan bias when transferring funds across governments is an established phenomenon. <br>We combine a model of symmetric information with selfish and office-motivated politicians and an RDD analysis based on close municipal elections to study partisan bias in the allocation of drought aid relief in Brazil. We identify a novel pattern of distributive politics whereby partisan bias materialises only before municipal elections, while it disappears before presidential elections. Furthermore, before mayoral elections, it fades for extreme (high or low) aridity levels while persisting for moderate levels. Our empirical results show that in this case alignment increases the probability of receiving aid relief by a factor of two (equivalent to 18.1 p.p.).<br>We use the Standardised Precipitation-Evapotranspiration Index (SPEI) to measure aridity.
description: Smallest Geographic Unit: Brazil, municipalities
DOI: 10.3886/e188961v1
title: Drought-reliefs and Partisanship

description: Partisan bias when transferring funds across governments is an established phenomenon. <br>We combine a model of symmetric information with selfish and office-motivated politicians and an RDD analysis based on close municipal elections to study partisan bias in the allocation of drought aid relief in Brazil. We identify a novel pattern of distributive politics whereby partisan bias materialises only before municipal elections, while it disappears before presidential elections. Furthermore, before mayoral elections, it fades for extreme (high or low) aridity levels while persisting for moderate levels. Our empirical results show that in this case alignment increases the probability of receiving aid relief by a factor of two (equivalent to 18.1 p.p.).<br>We use the Standardised Precipitation-Evapotranspiration Index (SPEI) to measure aridity.
description: Smallest Geographic Unit: Brazil, municipalities
DOI: 10.17632/gvsysphcrh.1
title: Dataset excess return by senators

description: In this dataset the excess return of the combined U.S. senator's portfolio is displayed.
DOI: 10.21942/uva.22592962
title: Thesis_Niklas-Kornder_Chapter2

description: Supplementary data of Chapter 2 of the PhD thesis of Niklas Kornder
DOI: 10.21942/uva.22592962.v1
title: Thesis_Niklas-Kornder_Supplementary-data_Chapter2

description: Supplementary data of Chapter 2 of the PhD thesis of Niklas Kornder
DOI: 10.17632/b5d7zfm33r.1
title: Dataset of "A global review of MSC certification: Why fisheries withdraw?"

description: The dataset summarized publicly available information from Marine stewardship council (MSC) fisheries website ( https://fisheries.msc.org/en/fisheries/ ), updated on 20th December 2018. The dataset summarized and reports: the name of fishery; the country; the continent; the FAO area related to the fishery; the management agency; the species; the type of gear used; the impact of the gear on the seabed and on the by-catch; the certifications status; the certificated catch; the species life span; and the certification time. These data base have been analyzed for the publication in Marine Policy of the paper titled: A global review of MSC certification: Why fisheries withdraw?   https://doi.org/10.1016/j.marpol.2022.105124
DOI: 10.34740/kaggle/dsv/5406337
title: Rotary Machine Faults
DOI: 10.34740/kaggle/dsv/5408468
title: Arabic hip-hop lyrics
DOI: 10.17632/jbg97377vw.1
title: Full Western blots

description: Full Western blots for Zhao and Liu et al., (2023) A tubule-sheet continuum model for the mechanism of nuclear envelope assembly
DOI: 10.17632/ck9f455vtt.1
title: Scrap tyres pyrolysis dataset

description: This dataset represents a collected information were 45% comes from a paper published and the rest are generated using a model. This way, a set of 100 entrances including three inputs are represented for pyrolysis of scrap tyres. The output is the pyrolytic oil yiel percentage. It can be used for modeling purposes in this specific subject, limited to a feed based on truck tyres.
DOI: 10.5281/zenodo.7830063
title: Dataset Peliculas IMDb 2022-1914

description: Dataset de películas extraido en el contexto de la PRAC1 de la UOC.
DOI: 10.5281/zenodo.7830062
title: Dataset Peliculas IMDb 2022-1914

description: Dataset de películas extraido en el contexto de la PRAC1 de la UOC.
DOI: 10.5281/zenodo.7823685
title: EAMv2 anthropogenic aerosol emissions data in model-native spectral-element grid

description: Anthropogenic aerosol emissions data from surface and elevated sources in E3SM Model-native grid. Data available for standard uniform resolution in EAMv2 (ne30pg2) and North America Regionally Refined Model (NA RRM). Data were prepared as a part of the improved emission treatment in E3SMv2 (available at: https://doi.org/10.5281/zenodo.7823633).
DOI: 10.17632/cgyyyrb8k6.1
title: Paleoenvironmental controls on the abundances of magnetofossils in Southwestern Iberian margin

description: The file is the dataset for the manuscript entitled 'Paleoenvironmental controls on the abundances of magnetofossils in Southwestern Iberian margin' by He et al., including paleointensity, geochemical, gain size, rock magnetic and diversity of magnetofossils data shown in the manuscript.
DOI: 10.17632/cgyyyrb8k6.2
title: Paleoenvironmental controls on the abundances of magnetofossils in Southwestern Iberian margin

description: The file is the dataset for the manuscript entitled 'Paleoenvironmental controls on the abundances of magnetofossils in Southwestern Iberian margin' by He et al., including paleointensity, geochemical, gain size, rock magnetic and diversity of magnetofossils data shown in the manuscript.
DOI: 10.17632/wf572dhwt3.1
title: Robust Parameter Design of the AISI 1045 end milling process

description: This data set contains the results obtained in a end milling experiment of AISI 1045 carbon steel, carried out at the Manufacturing Automation Laboratory of the Federal University of Itajubá (UNIFEI). The experiment is a robust parameter design, in which the data is displayed in a crossed-type design.
DOI: 10.6084/m9.figshare.22637665.v1
title: O que está acontecendo? O que os trending topics podem nos dizer a respeito de ações políticas coletivamente orquestradas

description: Data from manuscript "O que está acontecendo? O que os trending topics podem nos dizer a respeito de ações políticas coletivamente orquestradas"
DOI: 10.17632/6p2rtvt23b.1
title: JUN Engineering Group - Modelling of Delta Extended Multiwinding Transformer

description: Modelling of a Delta Extended Multiwinding Transformer taking in account its magnetic and electrical properties at low frequencies. The main Objective is to study its Inrush, short circuit properties and Harmonyc Losses.
DOI: 10.17632/96v79pw4gz.1
title: A dataset on declared tax evasion attitudes of students and entrepreneurs from Poland under the slippery slope framework

description: Dataset accompanying the article in Data in Brief journal: "A dataset on declared tax evasion attitudes of students and entrepreneurs from Poland under the slippery slope framework".
DOI: 10.17632/96v79pw4gz.2
title: A dataset on declared tax evasion attitudes of students and entrepreneurs from Poland under the slippery slope framework

description: Dataset accompanying the article in Data in Brief journal: "A dataset on declared tax evasion attitudes of students and entrepreneurs from Poland under the slippery slope framework".
DOI: 10.17632/4ydnbwh6rp.1
title: Data availability for the work entitled "Constrained multi-objective optimization for a glider's sandwich reinforcing structure employing mixed integer-continuous variables".

description: The provided data for replicating the results includes: a step CAD file of the reinforcing structure, a step CAD file of the glider's fuselage (simplified, without vertical and horizontal stabilizers), and a snippet of the mesh configuration file.

Using these files and data from Section 4.3.1 of the manuscript, a 3D parametric model of the glider and reinforced structure can be created using SALOME or other CAD software.

Regarding the FEM model, the boundary conditions are detailed in Section 3.3.1 of the manuscript, and the four ultimate cases are described in Section 3.3.2 of the manuscript.
DOI: 10.17632/d49ct4fypr.1
title: Modeling the consequences of asymmetric scrutiny of stock assessment outputs

description: Code for exploring the consequences of selectively re-doing stock assessments as a function of the management consequences of the output of the first pass of the assessment.
DOI: 10.17632/d49ct4fypr.2
title: Modeling the consequences of asymmetric scrutiny of stock assessment outputs

description: Code for exploring the consequences of selectively re-doing stock assessments as a function of the management consequences of the output of the first pass of the assessment.
DOI: 10.17632/97bvmgr2k2.1
title: Science Instructional Practices

description: SIPS Survey raw data
DOI: 10.17632/dvmz6pkzvb.1
title: BigMHC Training and Evaluation Data

description: All training and evaluation data used in the BigMHC study (https://doi.org/10.1101/2022.08.29.505690)

After inflating all zipped files, the total size of this repository is about 4.8 GB.

All other data and code are freely available at https://github.com/KarchinLab/bigmhc

--------------------------------------------------------------------------------
CSV Columns

mhc - MHC-I allele
pep  - peptide sequence if epitope data or mutated peptide sequence if neoepitope data
tgt   - target value of 1 (presented/immunogenic) or 0 (non-presented/non-immunogenic)

All other columns are the outputs of MHC-I epitope presentation and immunogenicity predictors.

--------------------------------------------------------------------------------
Files

el_train.csv.zip  - epitope presentation training data (inflates to 404 MB)
el.csv                 - epitope presentation evaluation data
im_train.csv      - immunogenicity transfer learning data
iedb.csv             - infectious disease epitope evaluation data
ifng.csv             - neoepitope evaluation data validated with IFN-γ release assays
manafest.csv     - neoepitope evaluation data validated with MANAFEST assays
neg.csv.zip        - non-presented epitopes to supplement immunogenicity evaluation (inflates to 4.4 GB)
DOI: 10.17632/dvmz6pkzvb.2
title: BigMHC Training and Evaluation Data

description: All training and evaluation data used in the BigMHC study 

(https://doi.org/10.1101/2022.08.29.505690).

All code is freely available at https://github.com/KarchinLab/bigmhc 

--------------------------------------------------------------------------------
CSV Columns

mhc - MHC-I allele
pep - peptide sequence if epitope data or mutated peptide sequence if neoepitope data
tgt - target value of 1 (presented/immunogenic) or 0 (non-presented/non-immunogenic)

All other columns are the outputs of MHC-I epitope presentation and immunogenicity predictors. -------------------------------------------------------------------------------- 

datasets.zip contains:

- el_test.csv - epitope presentation evaluation data
- el_train.csv - epitope presentation training data
- el_val.csv - epitope presentation validation data
- im_test.csv - immunogenicity transfer learning evaluation data
- im_train.csv - immunogenicity transfer learning training data
- im_val.csv - immunogenicity transfer learning validation data
- iedb.csv - infectious disease epitope evaluation data
- summary.csv - table of positives and negatives across each allele for each dataset
- pseudoseqs.csv - one-hot encoded MHC representations

eltrainval_models.zip contains the the models used to evaluate BigMHC on el_test.csv (the production models can be found in the GitHub repository)
-------------------------------------------------------------------------------- 

sha256 sums are below:

datasets.zip - 33a51710aa55ff1af99944ee617fc9f5e2a5224f4dfd2df85dd36d6fe7f44c5d
eltrainval_models.zip - e8500173cb2afbe5f8e8c0ebc60785c0de6d91aab622f8b83fff3b4e65b43223
DOI: 10.17632/dvmz6pkzvb.3
title: BigMHC Training and Evaluation Data

description: All training and evaluation data used in the BigMHC study

(https://doi.org/10.1101/2022.08.29.505690).

All code is freely available at https://github.com/KarchinLab/bigmhc 

--------------------------------------------------------------------------------
CSV Columns

mhc - MHC-I allele
pep - peptide sequence if epitope data or mutated peptide sequence if neoepitope data
tgt - target value of 1 (presented/immunogenic) or 0 (non-presented/non-immunogenic)

manafest.csv columns also include wtp (wild-type peptide) and gene (the name of the mutated gene)

pseudoseqs.csv columns include the MHC-I allele along with the index and amino acid of the aligned positions.

All other columns are the outputs of MHC-I epitope presentation and immunogenicity predictors. -------------------------------------------------------------------------------- 

datasets.zip contains the curated training, validation, and testing datasets along with a summary of the number of negatives and positives for each allele in each dataset (summary.csv):
- el_test.csv - epitope presentation evaluation data and all model predictions
- el_train.csv - epitope presentation training data
- el_val.csv - epitope presentation validation data
- im_test.csv - immunogenicity transfer learning evaluation data and all model predictions
- im_train.csv - immunogenicity transfer learning training data
- im_val.csv - immunogenicity transfer learning validation data
- iedb.csv - infectious disease epitope evaluation data and all model predictions
- summary.csv - table of positives and negatives across each allele for each dataset

- manafest.csv - neoepitope immunogenicity data validated using MANAFEST assays

- pseudoseqs.csv - one-hot encoded MHC representations

eltrainval_models.zip contains the the models used to evaluate BigMHC on el_test.csv (the production models can be found in the GitHub repository)
-------------------------------------------------------------------------------- 

sha256 sums are below:

datasets.zip - 0d152a452756cf2e0014ffced6afc25118e7c11cf1f626b26e49f50f79edffaa
eltrainval_models.zip - e8500173cb2afbe5f8e8c0ebc60785c0de6d91aab622f8b83fff3b4e65b43223
manafest.csv - accf19b8bb797ec842c3ee1b1ce1966feb35035df746f7a56b2994403ba1ad99
pseudoseqs.csv - cd1fa24fb4c9fc0ee592a3d753458c4e3abed0d5cc4ca76e325aa274df8e900a
DOI: 10.6084/m9.figshare.22637656
title: Usability Food Packaging Older Adults

description: Data is part of a food packaging usability study with older adults. Group 1 included individuals from 65 to 74 years, and Group 2, older adults 75+ years. The food packaging selected for the study was diverse, as their opening systems. <br>
DOI: 10.48732/jj60-7989
title: Analytic Rock Abundance Distributions and their application to Spacecraft Landing Hazards
DOI: 10.48732/g73p-w186
title: Analytic Rock Abundance Distributions and their application to Spacecraft Landing Hazards
DOI: 10.6084/m9.figshare.22637665
title: O que está acontecendo? O que os trending topics podem nos dizer a respeito de ações políticas coletivamente orquestradas

description: Data from manuscript "O que está acontecendo? O que os trending topics podem nos dizer a respeito de ações políticas coletivamente orquestradas"
DOI: 10.34740/kaggle/dsv/5408756
title: #ChatGPT 1000 Daily 🐦 Tweets
DOI: 10.17595/20221109.001
title: 500-member ensemble simulation output from NIES Chemistry-Climate Models for investigating total ozone dependence on ODS and GHG concentrations

description: The archived data is outputs from chemistry-climate models (CCSRNIES-MIROC3.2 CCM and CCSRNIES-MIROC5 CCM) that were run with 25 pairings of fixed GHG (greenhouse gases) and ODS (ozone depleting substances) concentrations for the future. The model calculations are 510 years' continuous runs with a pair of fixed ODS and GHG concentrations and the outputs from the last 500 years are stored as a 500-member ensemble.
DOI: 10.25919/psdm-0g07
title: Parkes observations for project P1090 semester 2020OCTS_07

description: We propose to search for millisecond pulsars (MSPs) in an annular region around Blazar OJ 287, the most promising candidate to host a nano-Hz gravitational wave (GW) emitting supermassive black hole binary (SMBHB). We plan to use the Parkes multibeam receiver to search for MSPs in the sky region around OJ 287. The proposed survey area of 143 square degrees is expected to yield at least one and possibly three MSPs. The observing strategy ensures that detected MSPs will be most sensitive to GWs from the proposed SMBHB in OJ 287. The timing of such MPSs should allow us to probe the properties of OJ 287 in the GW window.
DOI: 10.5281/zenodo.7829082
title: Dataset of the Article "Reconstruction of the unbinding pathways of new inhibitors of the SARS-CoV-2 Papain-like protease using molecular dynamics simulation"

description: This dataset contains concatenated trajectory files of the SuMD simulation of the unbinding pathways of the new inhibitors for SARS-CoV-2 papain-like protease. This data will be published in an article titled: "<strong>Reconstruction of the unbinding pathways of new inhibitors of the SARS-CoV-2 Papain-like protease using molecular dynamics simulation".</strong>
DOI: 10.5281/zenodo.7829083
title: Dataset of the Article "Reconstruction of the unbinding pathways of new inhibitors of the SARS-CoV-2 Papain-like protease using molecular dynamics simulation"

description: This dataset contains concatenated trajectory files of the SuMD simulation of the unbinding pathways of the new inhibitors for SARS-CoV-2 papain-like protease. This data will be published in an article titled: "<strong>Reconstruction of the unbinding pathways of new inhibitors of the SARS-CoV-2 Papain-like protease using molecular dynamics simulation".</strong>
DOI: 10.5281/zenodo.7830195
title: Identification of Sea Surface Temperature and Sea Surface Salinity Fronts along the California Coast: Application Using Saildrone and Satellite Derived Products

description: Data and Method described in https://www.mdpi.com/2072-4292/15/2/484, "Identification of Sea Surface Temperature and Sea Surface Salinity Fronts along the California Coast: Application Using Saildrone and Satellite Derived Products"
DOI: 10.5281/zenodo.7830194
title: Identification of Sea Surface Temperature and Sea Surface Salinity Fronts along the California Coast: Application Using Saildrone and Satellite Derived Products

description: Data and Method described in https://www.mdpi.com/2072-4292/15/2/484, "Identification of Sea Surface Temperature and Sea Surface Salinity Fronts along the California Coast: Application Using Saildrone and Satellite Derived Products"
DOI: 10.5281/zenodo.7830212
title: desmognathus_abditus_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7830211
title: desmognathus_abditus_spades_01.fasta.gz

description: .
DOI: 10.6084/m9.figshare.22634854
title: Dipsadidae phylogeny, with outgroups

description: Bayesian phylogenetic reconstruction of Dipsadidae (287 species), with outgroups (57 species). This tree was used to estimate the ancestral range of Dipsadidae and its historical biogeography throughout the New World.
DOI: 10.34740/kaggle/dsv/5409459
title: Youtube Trending Video - Taiwan & Hong Kong