cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25403/upresearchdata.25783008.v2
title: Phylogenetic analyses used for the re-identification of Penicillium and Talaromyces catalogued in South African culture collections

description: DNA sequence datasets, alignments and phylogenetic trees used in a publication to describe eight Penicillium and three Talaromyces species. Datasets were aligned in MAFFT v. 7.490 (Katoh & Standley 2013) with the G-INS-I option selected, with alignments manually trimmed, adjusted and concatenated in Geneious where needed. The most appropriate partition schemes and substitution models were selected based on Bayesian information criterion using a greedy strategy implemented in PartitionFinder v. 2.1 (Lanfear et al. 2017), allowing gene regions, introns, exons and codon positions to be independent datasets. Phylogenies were calculated using both Maximum Likelihood (ML) and Bayesian tree Inference (BI). ML was performed in IQtree v. 2.2.0 (Minh et al. 2020) with support in nodes calculated using a bootstrap analysis of 1000 replicates. BI was performed in MrBayes v. 3.2.7 (Ronquist et al. 2012), with three sets of four chains (1 cold and three heated) and was stopped at an average standard deviation for split frequencies of 0.01 using the "stoprule". Trees were visualised in TreeViewer v. 2.0.1 (https://treeviewer.org/) and edited in Affinity Publisher 2.0.3 (Serif (Europe), Nottingham, UK) for publication. ML tree topologies were used to present the results, with both bootstrap and posterior probability values shown for the supported branches. Alignments, Partitionfinder results and phylogenetic trees were uploaded.
<br>
DOI: 10.25549/whittington-ouc17004904
title: Publicity photos, Vermont Heights, Los Angeles County, Calif., 1938

description: 7 photographs of female models inside and outside houses, probably in Los Angeles County, California, 1938 January 11. "Client: Western Builders, W[illiam] F. Richardson, 6009 West B[ou]l[e]v[ar]d; Agency Clarence Neuman; (will call 1 p.m. Wed[nesday]" -- on envelope front. "Operator's report -- name: Joe; 6 original photographs -- size: 8x10; out of city 15 miles - Amount: 16.00" -- on envelope back. The negative envelope indicates that the Whittington studio fulfilled 2 print orders, one to be colored.
DOI: 10.15468/dl.ep4dtp
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Oenothera ×adriatica Soldano)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013217-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25403/upresearchdata.25783008.v1
title: Phylogenetic analyses used for the re-identification of <i>Penicillium</i> and <i>Talaromyces</i> catalogued in South African culture collections

description: DNA sequence datasets, alignments and phylogenetic trees used in a publication to describe eight Penicillium and three Talaromyces species. Datasets were aligned in MAFFT v. 7.490 (Katoh & Standley 2013) with the G-INS-I option selected, with alignments manually trimmed, adjusted and concatenated in Geneious where needed. The most appropriate partition schemes and substitution models were selected based on Bayesian information criterion using a greedy strategy implemented in PartitionFinder v. 2.1 (Lanfear et al. 2017), allowing gene regions, introns, exons and codon positions to be independent datasets. Phylogenies were calculated using both Maximum Likelihood (ML) and Bayesian tree Inference (BI). ML was performed in IQtree v. 2.2.0 (Minh et al. 2020) with support in nodes calculated using a bootstrap analysis of 1000 replicates. BI was performed in MrBayes v. 3.2.7 (Ronquist et al. 2012), with three sets of four chains (1 cold and three heated) and was stopped at an average standard deviation for split frequencies of 0.01 using the "stoprule". Trees were visualised in TreeViewer v. 2.0.1 (https://treeviewer.org/) and edited in Affinity Publisher 2.0.3 (Serif (Europe), Nottingham, UK) for publication. ML tree topologies were used to present the results, with both bootstrap and posterior probability values shown for the supported branches. Alignments, Partitionfinder results and phylogenetic trees were uploaded.
<br>
DOI: 10.25549/whittington-ouc17005044
title: Wrecked Chev., Bell Auto Works, Los Angeles, Calif., 1938

description: 2 photographs of a damaged automobile in a garage, Los Angeles, California, 1938 January 17. "Client: Spear & Co[mpany], Mr. Walsh, 810 S. Spring, John Maxwell" -- on envelope front. "Operator's report -- Name: Davey; 2 original photographs -- size: 8x10; in city; Amount: 5-" -- on envelope back. The negative envelope indicates that the Whittington studio fulfilled one print order.
DOI: 10.15468/dl.zftvap
title: Occurrence Download

description: A dataset containing 696 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platanthera praeclara Sheviak & M.L.Bowles"
 ]
}

 The dataset includes 696 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015360-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukkf6f
title: Occurrence Download

description: A dataset containing 1085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 {
 "or" : [
 "Country is Switzerland",
 "Country is Italy",
 "Country is Austria"
 ]
 },
 "TaxonKey is Androsace alpina (L.) Lam.",
 "Year 1900-2020"
 ]
}

 The dataset includes 1085 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115331-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pdjje
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea spinosociliata Seenus"
 ]
}

 The dataset includes 56 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001318-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rlw9aw
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-26.11432 37.44804,34.11432 37.44804,34.11432 61.55196,-26.11432 61.55196,-26.11432 37.44804))",
 "HasCoordinate is true",
 "TaxonKey is Narcissus cyclamineus DC.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 183 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015360-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tp3grv
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ursus arctos isabellinus Horsfield, 1826"
 ]
}

 The dataset includes 42 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011196-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9gy3mz
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clerodendrum villosicalyx Moldenke"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001292-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tp4jre
title: Occurrence Download

description: A dataset containing 14812 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Testudo hermanni Gmelin, 1789"
 ]
}

 The dataset includes 14812 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015360-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbrdq8
title: Occurrence Download

description: A dataset containing 474 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Geometry POLYGON((21.44531 6.32813,-0.70312 -23.37891,26.71875 -53.26172,64.86328 7.38281,31.99219 8.26172,21.44531 6.32813))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Geodetic datum assumed WGS84",
 "TaxonKey is Equus quagga Boddaert, 1785",
 "Year 1962-2020"
 ]
}

 The dataset includes 474 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097503-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.enhdwh
title: Occurrence Download

description: A dataset containing 2512739 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 {
 "or" : [
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate rounded",
 "Issue is Coordinate reprojected",
 "Issue is Country derived from coordinates"
 ]
 },
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 2512739 records from 575 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015360-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpuqx3
title: Occurrence Download

description: A dataset containing 10243 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is one of (Colombia, Panama, Ecuador)",
 "Issue is one of (Coordinate rounded, Continent derived from coordinates)",
 "TaxonKey is one of (Carijoa riisei (Duchassaing & Michelotti, 1860), Tubastraea coccinea Lesson, 1830, Alitta succinea (Leuckart, 1847), Penaeus monodon Fabricius, 1798, Pterois volitans (Linnaeus, 1758), Oreochromis niloticus (Linnaeus, 1758), Omobranchus punctatus (Valenciennes, 1836), Trichopodus Lacepède, 1801, Electroma Stoliczka, 1871, Perna viridis (Linnaeus, 1758), Corbicula fluminea (O.F.Müller, 1774), Perna perna (Linnaeus, 1758), Kappaphycus alvarezii (Doty) Doty ex P.C.Silva, Charybdis hellerii (A.Milne-Edwards, 1867), Rhithropanopeus harrisii (Gould, 1841), Amphibalanus amphitrite (Darwin, 1854), Mnemiopsis leidyi A.Agassiz, 1865, Bythotiara drygalskii Vanhöffen, 1912, Chlidonia pyriformis (Bertoloni, 1810), Schizoporella pungens Canu & Bassler, 1928, Bugula neritina (Linnaeus, 1758), Crassostrea rhizophorae (Guilding, 1828), Crassostrea gigas (Thunberg, 1793), Mytella charruana (d'Orbigny, 1846), Hippolyte zostericola (S.I.Smith, 1873), Caprella penantis Leach, 1814, Caprella danilevskii Czerniavski, 1868, Didemnum Savigny, 1816, Tarpon atlanticus (Valenciennes, 1847), Asparagopsis taxiformis (Delile) Trevis., Cardisoma crassum Smith, 1870, Pennaria disticha Goldfuss, 1820, Acanthaster planci (Linnaeus, 1758), Amathia verticillata (delle Chiaje, 1822), Paracaprella pusilla Mayer, 1890, Petrolisthes armatus (Gibbes, 1850), Amphibalanus eburneus (Gould, 1841), Amphibalanus improvisus (Darwin, 1854), Megabalanus tintinnabulum (Linnaeus, 1758), Rhynchophorus ferrugineus (A.G.Olivier, 1791), Xenia membranacea Schenk, 1896, Rubus megalococeus Focke, 1874, Rubus adenotrichos Schltdl., Cochlodinium polykrikoides Margalef, Alexandrium monilatum (J.F.Howell) Balech, 1995, Diplosoma listerianum (Milne Edwards, 1841), Gymnodinium catenatum Graham, 1943)",
 "Year 2019-2024"
 ]
}

 The dataset includes 10243 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001280-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vcwzqb
title: Occurrence Download

description: A dataset containing 815699 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Kenya",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 1990-2022"
 ]
}

 The dataset includes 815699 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133805-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygfybk
title: Occurrence Download

description: A dataset containing 330 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Myotis alcathoe von Helversen & Heller, 2001"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 330 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015362-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xew69b
title: Occurrence Download

description: A dataset containing 2111 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea sphaerocephala L."
 ]
}

 The dataset includes 2111 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001286-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7sncf
title: Occurrence Download

description: A dataset containing 412179 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limnephilidae"
 ]
}

 The dataset includes 412179 records from 340 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106307-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4w7sag
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zingiber discolor Škorničk., H.Ð.Tran & Rybková"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137589-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhqq6g
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "HasCoordinate is true",
 "TaxonKey is Physella acuta (Draparnaud, 1805)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 27 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015364-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kjpay
title: Occurrence Download

description: A dataset containing 17328 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Dendrobates truncatus (Cope, 1861)"
 ]
}

 The dataset includes 17328 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001285-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hmxaf
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Cedrela angustifolia Moc. & Sessé ex DC."
 ]
}

 The dataset includes 27 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137592-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gx7vk
title: Occurrence Download

description: A dataset containing 15899 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linepithema humile (Mayr, 1868)"
 ]
}

 The dataset includes 15899 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198196-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j9wkfb
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xenostegia lomamiensis Sosef & Gereau"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137591-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zm65vv
title: Occurrence Download

description: A dataset containing 276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-36.74291 32.19441,44.74291 32.19441,44.74291 64.80559,-36.74291 64.80559,-36.74291 32.19441))",
 "HasCoordinate is true",
 "TaxonKey is Narcissus scaberulus Henriq.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 276 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015364-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwjn7r
title: Occurrence Download

description: A dataset containing 1311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Acromyrmex Mayr, 1865"
 ]
}

 The dataset includes 1311 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0348634-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kb3s5t
title: Occurrence Download

description: A dataset containing 150949 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cistus albidus L."
 ]
}

 The dataset includes 150949 records from 378 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001307-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93vfw8
title: Occurrence Download

description: A dataset containing 42616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-6.38306 36.8427,-5.67993 35.92287,-4.48462 36.61729,-5.41626 37.37539,-6.38306 36.8427))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 42616 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0114697-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sv29sn
title: Occurrence Download

description: A dataset containing 2645 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myroxylon L.f."
 ]
}

 The dataset includes 2645 records from 225 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0207146-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbsuza
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Hieracium subaudum Pall."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000811-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbsqyb
title: Occurrence Download

description: A dataset containing 616 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Mozambique",
 "Country is Zambia",
 "Country is Zimbabwe"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lantana camara L."
 ]
}

 The dataset includes 616 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067881-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2akdb
title: Occurrence Download

description: A dataset containing 2487814 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Spain",
 "Country is Portugal"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus L."
 ]
}

 The dataset includes 2487814 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271149-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ap5ne9
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CHN.15_1, CHN.31_1, CHN.1_1, CHN.24_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cardiocrinum cathayanum (E.H.Wilson) Stearn"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013314-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pw7iip
title: Occurrence Download

description: A dataset containing 482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Solanum lycopersicum L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 482 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023476-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.42z5tx
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agalinis decemloba (Greene) Pennell",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America, Canada)"
 ]
}

 The dataset includes 76 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271130-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.