cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fude6a
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Protobothrops jerdonii)",
 "DecimalLatitude is greater than or equal to 0",
 "DecimalLatitude is less than or equal to 60",
 "DecimalLongitude is greater than or equal to 60",
 "DecimalLongitude is less than or equal to 150",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 160 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009727-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9gtjs8
title: Occurrence Download

description: A dataset containing 16063 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 49.085278",
 "DecimalLatitude is less than or equal to 54.085278",
 "DecimalLongitude is greater than or equal to -135.0",
 "DecimalLongitude is less than or equal to -130.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 16063 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009726-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tbvz3c
title: Occurrence Download

description: A dataset containing 277282 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crocodylia"
 ]
}

 The dataset includes 277282 records from 636 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009697-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umm33h
title: Occurrence Download

description: A dataset containing 262195 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is National Plant Monitoring Scheme - England, Scotland, Wales"
 ]
}

 The dataset includes 262195 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009716-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30720326
title: Data of "C3-Symmetry-induced Antisymmetric Planar Hall effect and Magnetoresistance in Single-Crystalline Ferromagnets".

description: Data of "C3-Symmetry-induced Antisymmetric Planar Hall effect and Magnetoresistance in Single-Crystalline Ferromagnets".
DOI: 10.6084/m9.figshare.30720326.v1
title: Data of "C3-Symmetry-induced Antisymmetric Planar Hall effect and Magnetoresistance in Single-Crystalline Ferromagnets".

description: Data of "C3-Symmetry-induced Antisymmetric Planar Hall effect and Magnetoresistance in Single-Crystalline Ferromagnets".
DOI: 10.15468/dl.8una26
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cymbaria mongolica"
 ]
}

 The dataset includes 205 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009728-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15396418
title: Dataset for "Dichalcogenide Fidaxomicin Derivatives to Probe Thiol-Mediated Uptake into Bacteria"

description: ZIP File:

Characterisation data (such as e.g. NMR, IR, MS spectra)

NMR raw data, .mnova files

 

Updated November 25th, 2025
DOI: 10.5281/zenodo.17722930
title: Dataset for "Dichalcogenide Fidaxomicin Derivatives to Probe Thiol-Mediated Uptake into Bacteria"

description: ZIP File:

Characterisation data (such as e.g. NMR, IR, MS spectra)

NMR raw data, .mnova files

 

Updated November 25th, 2025
DOI: 10.15468/dl.ef9fxt
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Protobothrops kaulbacki)",
 "DecimalLatitude is greater than or equal to 0",
 "DecimalLatitude is less than or equal to 60",
 "DecimalLongitude is greater than or equal to 60",
 "DecimalLongitude is less than or equal to 150",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009729-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjgyaz
title: Occurrence Download

description: A dataset containing 2597 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynomys mexicanus"
 ]
}

 The dataset includes 2597 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009730-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxnrwg
title: Occurrence Download

description: A dataset containing 292880 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Thunnus albacares, Scomberoides lysan, Moolgarda seheli, Istiompax indica, Coryphaena hippurus, Caranx sexfasciatus, Acanthurus olivaceus)"
 ]
}

 The dataset includes 292880 records from 450 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009706-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zbpd9
title: Occurrence Download

description: A dataset containing 565799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Potentilla reptans"
 ]
}

 The dataset includes 565799 records from 3214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024676-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2bd87vm
title: Data from: Functional performance of turtle humerus shape across an ecological adaptive landscape

description: The concept of the adaptive landscape has been invaluable to evolutionary
 biologists for visualizing the dynamics of selection and adaptation; and
 is increasingly being used to study morpho-functional data. Here we
 construct adaptive landscapes to explore functional trade-offs of humerus
 morphology in turtles adapted to three different locomotor environments:
 marine, semiaquatic, and terrestrial. Humerus shape from 40 species of
 cryptodire turtles was quantified using a pseudolandmark approach.
 Hypothetical shapes were extracted in a grid across morphospace and four
 functional traits measured on those shapes that represent strength, stride
 length, mechanical advantage, and hydrodynamics. Quantitative trait
 modeling was used to construct adaptive landscapes that optimize the
 functional traits for each of the three locomotor ecologies. Our data show
 that turtles living in different environments have statistically different
 humeral shapes. The optimum adaptive landscape for each ecology is defined
 by a different combination of performance trade-offs, with turtle species
 clustering around their respective adaptive peak. Further, species adhere
 to pareto fronts between marine-semiaquatic and semiaquatic-terrestrial
 optima, but not between marine-terrestrial. Our study demonstrates the
 utility of adaptive landscapes in informing the link between form,
 function, and ecological adaptation; and establishes a framework for
 reconstructing turtle ecological evolution using isolated humeri from the
 fossil record.
description: turtle humeri
 landmarksmorphologika file
 containing psuedolandmark configurations of 40 turtle humeri, each with
 1024 psuedolandmarks.morphologika_2_unscaled.txt
DOI: 10.5061/dryad.nh053c6
title: Data from: Single-cell virus sequencing of influenza infections that trigger innate immunity

description: Influenza-infected cells vary widely in their expression of viral genes,
 and only occasionally activate innate immunity. Here we develop a new
 method to assess how the genetic variation in viral populations
 contributes to this heterogeneity. We do this by determining the
 transcriptome and full-length sequences of all viral genes in single cells
 infected with a nominally "pure" stock of influenza virus. Most
 cells are infected by virions with defects, some of which increase the
 frequency of innate-immune activation. These immunostimulatory defects are
 diverse, and include mutations that perturb the function of the viral
 polymerase protein PB1, large internal deletions in viral genes, and
 failure to express the virus's interferon antagonist NS1. However,
 immune activation remains stochastic in cells infected by virions with
 these defects, and occasionally is triggered even by virions that express
 unmutated copies of all genes. Our work shows that the diverse spectrum of
 defects in influenza virus populations contributes to---but does not
 completely explain---the heterogeneity in viral gene expression and immune
 activation in single infected cells.
description: File
 S1Sequences of the IFN
 reporters in Fig. 1A.File_S1.zipFile S2Genbank files giving sequences of the wild-type and synonymously barcoded viruses.File_S2.zipFile S3A text file giving the primers used to amplify the influenza cDNAs for PacBio sequencing.File_S3.txtFile S4A CSV file giving the genotypes in Fig. 4.File_S4.csvFile S5A CSV file giving the viral mutations and related information in Fig. 5.File_S5.csvFile S6Genbank plasmid maps for the mutant genes cloned into the pHW* bi-directional reverse genetics plasmid.File_S6.zipFile S7The Jupyter notebook that analyzes the PacBio data.pacbio_analysis.ipynbFile S8The Jupyter notebook that analyzes the annotated cell-gene matrix.monocle_analysis.ipynb
DOI: 10.5061/dryad.8cn4v87
title: Data from: A global synthesis of fire effects on pollinators

description: Aim: Understanding fire effects on pollinators is critical in the context
 of fire regime changes and the global pollination crisis. Through a
 systematic and quantitative review of the literature we provide the first
 global assessment of pollinator responses to fire. We hypothesize that
 pollinators increase after fire and during the early postfire succession
 stages; however, high fire frequency has the opposite effect, decreasing
 pollinators. Location: Terrestrial ecosystems, excluding Antarctica. Time
 period: Data collected from 1973 to 2017. Major taxa studied: Insects
 (Coleoptera, Diptera, Hymenoptera and Lepidoptera) and a few bird species.
 Methods: We first compiled available studies across the globe that
 assessed fire effects on pollinator communities. Then, by means of
 hierarchical meta-analyses, we evaluated how different fire regime
 parameters (fire frequency, postfire time and fire type) and habitat
 characteristics affect the abundance and richness of animals that act as
 pollinators. We also explored to what extent the responses vary among taxa
 groups and life history traits of pollinators (sociality system, nest
 location and feeding specialization), and among biomes. Results: The
 overall effect size of fire on pollinator abundance and richness across
 all studies was positive. Fire effect was especially clear and significant
 in early postfire communities, after wildfires, and for Hymenoptera.
 Taxonomic resolution influenced fire effects, where only studies at the
 species/genus and families levels showed significant effects. The main
 exceptions were recurrent fires that showed a negative effect, and
 especially wildfire effects on Lepidoptera abundance that showed a
 significant negative response. Main conclusions: Pollinators tend to be
 promoted after a wildfire event. However, short fire intervals may threat
 pollinators, and especially lepidopterans. Given the current fire regime
 changes at the global scale, it is imperative to monitor postfire
 pollinators across many ecosystems, as our results suggest that fire
 regime is critical in determining the dynamics of pollinator communities.
description: Table
 S4References and effect
 sizes extracted from studies analysing effect of fire on pollinator
 abundance. Vd = variance of Hedges’ d. In pollinator taxa column, “insect”
 indicates several orders. Biome abbreviations are indicated in Fig. S5
 legend.Table
 S5References and effect
 sizes extracted from studies analysing effect of fire on pollinator
 richness. Vd = variance of Hedges’ d. In pollinator taxa column, “insect”
 indicates several orders. Biome abbreviations are indicated in Fig. S5
 legend.
DOI: 10.60964/rnd-14mc-v747
title: Code for human brain LFPs

description: The description for this dataset is in preparation.
DOI: 10.5061/dryad.782s82b
title: Data from: Turning down the heat: vegetation feedbacks limit fire regime responses to global warming

description: Climate change is projected to dramatically increase boreal wildfire
 activity, with broad ecological and socio-economic consequences. As global
 temperatures rise, periods with elevated fire weather are expected to
 increase in frequency and duration, which would be expected to increase
 the number and size of fires. Statistical forecasts or simulations of
 future fire activity often account for direct climatic effects only,
 neglecting other controls of importance, such as biotic feedbacks. This
 could result in overestimating the effects of climate change on fire
 activity, if the future distribution of vegetation or fuels were to
 change. We incorporated sensitivity to climate or fire weather and
 vegetation in a fire simulation model, and represented explicitly two key
 biotic feedbacks linked to succession and regeneration processes. We used
 this model to forecast annual fire activity from 2011 to 2099 over a large
 region of boreal forest in Québec, Canada, dominated by balsam fir (Abies
 balsamea (L.) Mill) and yellow birch (Betula alleghaniensis Britt.) or
 paper birch (Betula papyrifera Marsh.), with and without the biotic
 feedbacks. Our simulations show that vegetation changes triggered by fire
 disturbance altered future fire activity, and may even be as important a
 driver as climate change itself. Indeed, over the course of the century,
 vegetation changes were projected to offset much of the increase in fire
 activity that would be expected due to global warming as such. It follows
 that if biotic feedbacks are not included in statistical or
 simulation-based forecasts, the resultant projections of future fire
 activity could be biased upwards to a very considerable degree. For the
 case of end-of-century mean annual burn rate, we estimated this positive
 bias to be as high as 400%. Accounting for biotic feedbacks in simulation
 models is therefore necessary for accurate projection of future wildfire
 activity and associated vegetation changes. Purely statistical forecasts
 based on current vegetation cannot be relied upon, in the presence of
 biotic feedbacks. Our results further suggest that vegetation management
 could reduce fire risk in some systems by altering the abundance and
 distribution of the most highly flammable fuels, and thus mitigate the
 impact of climate change on fire activity.
description: fireSenseSpaDES modules and data to estimate the parameters for the fire ignition, escape and spread module and to run the fire and vegetation succession models on the initial landscape are provided, including the annual fire weather data for the 21st century as used in the manuscript. This data and code is sufficient to reproduce the results in the paper, although some SpaDES code would need to be written: see http://predictiveecology.org/SpaDES/ for downloads and tutorials.
DOI: 10.5061/dryad.n343sh3
title: Data from: Mycorrhizal fungi respond to resource inequality by moving phosphorus from rich to poor patches across networks

description: The world’s ecosystems are characterized by an unequal distribution of
 resources. Trade partnerships between organisms of different species -
 mutualisms - can help individuals cope with such resource inequality.
 Trade allows individuals to exchange commodities they can provide at low
 cost, for resources that are otherwise impossible, or more difficult, to
 access. However, as resources become increasingly patchy in time or space,
 it is unknown how organisms alter their trading strategies. Here we show
 how a symbiotic fungus mediates trade with a host root in response to
 different levels of resource inequality across its network. We developed a
 quantum-dot tracking technique to quantify phosphorus trading strategies
 of arbuscular mycorrhizal fungi simultaneously exposed to rich and poor
 resource patches. By following fluorescent nanoparticles of different
 colors across fungal networks, we determined where phosphorus was hoarded,
 relocated and transferred to plant hosts. We found that increasing
 exposure to inequality stimulated trade. Fungi responded to high resource
 variation by: (1) increasing the total amount of phosphorus distributed to
 host roots; (2) decreasing allocation to storage; (3) differentially
 moving resources within the network, from rich to poor patches. Using
 single-particle tracking and high-resolution video, we show how dynamic
 resource movement may help the fungus capitalize on value differences
 across the trade network, physically moving resources to areas of high
 demand to gain better returns. Such translocation strategies can help
 symbiotic organisms cope with exposure to resource inequality.
description: Whole_plant_data.csvIneq_full_fungal_experimental_dataColonisation_DataToxicity_dataIn_vitro_colour_control_dataIneq_nut_level_control_experimental_dataAnalyses_Figures_CBR-script to perform paper analyses (see also, readme.txt).Analyses_Figures_Report_CB.rmdR-markdown file to create markdown-report.Analyses_Figures_Report_CB.RmdREADMEdryad_readme.txt
DOI: 10.5061/dryad.1g6vm34
title: Data from: Ophthalmologic evaluation of severely obese patients undergoing bariatric surgery: a pilot, monocentric, prospective, open-label study

description: Purpose: The aim of this study was to investigate the pathogenic role of
 obesity on blinding eye diseases in a population of severely obese
 patients with no history of eye diseases, and to verify whether weight
 loss induced by bariatric surgery may have a protective effect. Methods:
 This was a pilot, monocentric, prospective, and open label study conducted
 at the University Hospital of Pisa. Fifty-seven severely obese patients
 with a mean body mass index value of 44.1 ± 6 kg/m2 were consecutively
 recruited and received a complete ophthalmological evaluation and optical
 coherence tomography. Twenty-nine patients who underwent gastric bypass
 were evaluated also 3 months, and 1 year after surgery. Results: At
 baseline, blood pressure value were directly and significantly related to
 intraocular pressure values (p&lt;0.05, R = 0.35). Blood pressure
 values were also significantly and inversely related to retinal nerve
 fiber layer thickness, particularly in the temporal sector (RE
 p&lt;0.05 r-0.30; LE p&lt;0.01, R = -0.43). Moreover, minimum
 foveal thickness values were significantly and inversely associated with
 body mass index (RE p&lt;0.02, R = -0.40; LE p&lt;0.02, R =
 -0.30). A significant reduction of body mass index (p&lt;0.05) and a
 significant (p&lt;0.05) improvement of blood pressure was observed
 three months and one year after gastric bypass, which were significantly
 associated with an increase in retinal nerve fiber layer thickness and
 minimum foveal thickness values in both eyes (p&lt;0.05). Conclusions:
 The results of this study suggest that obese patients may have a greater
 susceptibility to develop glaucomatous optic nerve head damage and
 age-related macular degeneration. Moreover, weight reduction and
 improvement of comorbidities obtained by bariatric surgery may be
 effective in preventing eye disease development by improving retinal nerve
 fiber layer and foveal thickness.
description: Data of patients before,
 three months and one year after bariatric surgeryAnthropometric
 parameters, blood pressure values and ophthalmic parameters registered
 before (baseline), after 3 months and one year after bariatric
 surgeryCompletedataset.xlsx
DOI: 10.5061/dryad.95p761k
title: Data from: Match and mismatch between dietary switches and microbial partners in plant sap-feeding insects

description: Some animal groups associate with the same vertically-transmitted
 microbial symbionts over extended periods of evolutionary time, punctuated
 by occasional symbiont switches to different microbial taxa. Here we test
 the oft-repeated suggestion that symbiont switches are linked with host
 diet changes, focusing on hemipteran insects of the suborder
 Auchenorrhyncha. These insects include the only animals that feed on plant
 xylem sap through the life cycle, as well as taxa that feed on phloem sap
 and plant parenchyma cells. Ancestral state reconstruction provides strong
 statistical support for a xylem-feeding auchenorrhynchan ancestor bearing
 the dual symbiosis with the primary symbiont Sulcia (Bacteroidetes) and
 companion symbiont “β-Sym” (β-proteobacteria). We identified 7 dietary
 transitions from xylem-feeding (six to phloem-feeding, one to
 parenchyma-feeding), but no reversions to xylem-feeding; five evolutionary
 losses of Sulcia, including replacements by yeast symbionts, exclusively
 in phloem/parenchyma-feeding lineages; and 14-15 losses of β-Sym,
 including 9 transitions to a different bacterial companion symbiont. Our
 analysis indicates that, although companion symbiont switching is not
 associated with shifts in host diet, Sulcia is likely required for
 xylem-feeding. Furthermore, the ancestral auchenorrhynchan bearing Sulcia
 and β-Sym likely represents the sole evolutionary origin of xylem feeding
 in the animal kingdom.
description: aucho_endosymbionts-masterFull GitHub Repository including all data (trait, phylogeny, alignments) and R-code to perform all analyses and create all figures in Bell-Roberts, Douglas and Werner (2019).