cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20193453.v1
title: Additional file 2 of Dynamic rewiring of biological activity across genotype and lineage revealed by context-dependent functional interactions

description: Additional file 2. Tab-delimited table of regression coefficients, with 2918 genomic and lineage features used to predict background-specific essentiality of 2987 genes.
DOI: 10.6084/m9.figshare.20193453
title: Additional file 2 of Dynamic rewiring of biological activity across genotype and lineage revealed by context-dependent functional interactions

description: Additional file 2. Tab-delimited table of regression coefficients, with 2918 genomic and lineage features used to predict background-specific essentiality of 2987 genes.
DOI: 10.6084/m9.figshare.20193468
title: Additional file 4 of Dynamic rewiring of biological activity across genotype and lineage revealed by context-dependent functional interactions

description: Additional file 4. Quantitative data from Western blot experiments.
DOI: 10.6084/m9.figshare.20193468.v1
title: Additional file 4 of Dynamic rewiring of biological activity across genotype and lineage revealed by context-dependent functional interactions

description: Additional file 4. Quantitative data from Western blot experiments.
DOI: 10.6084/m9.figshare.20193462
title: Additional file 3 of Dynamic rewiring of biological activity across genotype and lineage revealed by context-dependent functional interactions

description: Additional file 3. Tab-delimited table of top 2644 hits from differential PCC analysis.
DOI: 10.6084/m9.figshare.20193462.v1
title: Additional file 3 of Dynamic rewiring of biological activity across genotype and lineage revealed by context-dependent functional interactions

description: Additional file 3. Tab-delimited table of top 2644 hits from differential PCC analysis.
DOI: 10.6084/m9.figshare.20193477.v1
title: Additional file 1 of A case–control study of agricultural and behavioral factors associated with leptospirosis in Vietnam

description: Additional file 1. Study dataset.
DOI: 10.6084/m9.figshare.20193477
title: Additional file 1 of A case–control study of agricultural and behavioral factors associated with leptospirosis in Vietnam

description: Additional file 1. Study dataset.
DOI: 10.6084/m9.figshare.20193531
title: Additional file 12 of In silico characterization, molecular phylogeny, and expression profiling of genes encoding legume lectin-like proteins under various abiotic stresses in Arabidopsis thaliana

description: Additional file 12: Table S5. List of transcription factors (TFs), which are predicted to bind cis-regulatory elements (CREs) present in 500 bp upstream promoter region of AtLLPs.
DOI: 10.6084/m9.figshare.20193531.v1
title: Additional file 12 of In silico characterization, molecular phylogeny, and expression profiling of genes encoding legume lectin-like proteins under various abiotic stresses in Arabidopsis thaliana

description: Additional file 12: Table S5. List of transcription factors (TFs), which are predicted to bind cis-regulatory elements (CREs) present in 500 bp upstream promoter region of AtLLPs.
DOI: 10.6084/m9.figshare.20193537
title: Additional file 13 of In silico characterization, molecular phylogeny, and expression profiling of genes encoding legume lectin-like proteins under various abiotic stresses in Arabidopsis thaliana

description: Additional file 13: Table S6. Expressional correlation of coefficients (r-value) analysis between AtLLPs and their cis-regulatory elements (CREs) cognate transcription factors (TFs) in root and shoot tissues under different abiotic stress conditions.
DOI: 10.6084/m9.figshare.20193537.v1
title: Additional file 13 of In silico characterization, molecular phylogeny, and expression profiling of genes encoding legume lectin-like proteins under various abiotic stresses in Arabidopsis thaliana

description: Additional file 13: Table S6. Expressional correlation of coefficients (r-value) analysis between AtLLPs and their cis-regulatory elements (CREs) cognate transcription factors (TFs) in root and shoot tissues under different abiotic stress conditions.
DOI: 10.6084/m9.figshare.20193543
title: Additional file 15 of In silico characterization, molecular phylogeny, and expression profiling of genes encoding legume lectin-like proteins under various abiotic stresses in Arabidopsis thaliana

description: Additional file 15: Table S8. Raw data of qRT-PCR.
DOI: 10.6084/m9.figshare.20193543.v1
title: Additional file 15 of In silico characterization, molecular phylogeny, and expression profiling of genes encoding legume lectin-like proteins under various abiotic stresses in Arabidopsis thaliana

description: Additional file 15: Table S8. Raw data of qRT-PCR.
DOI: 10.6084/m9.figshare.20193561
title: Additional file 4 of In silico characterization, molecular phylogeny, and expression profiling of genes encoding legume lectin-like proteins under various abiotic stresses in Arabidopsis thaliana

description: Additional file 4: Sequencing information of AT5g03350CDS-pDONR207 entry clone (forward).
DOI: 10.6084/m9.figshare.20193561.v1
title: Additional file 4 of In silico characterization, molecular phylogeny, and expression profiling of genes encoding legume lectin-like proteins under various abiotic stresses in Arabidopsis thaliana

description: Additional file 4: Sequencing information of AT5g03350CDS-pDONR207 entry clone (forward).
DOI: 10.6084/m9.figshare.20193567
title: Additional file 5 of In silico characterization, molecular phylogeny, and expression profiling of genes encoding legume lectin-like proteins under various abiotic stresses in Arabidopsis thaliana

description: Additional file 5: Sequencing information of AT5g03350CDS-pDONR207 entry clone (reverse).
DOI: 10.6084/m9.figshare.20193567.v1
title: Additional file 5 of In silico characterization, molecular phylogeny, and expression profiling of genes encoding legume lectin-like proteins under various abiotic stresses in Arabidopsis thaliana

description: Additional file 5: Sequencing information of AT5g03350CDS-pDONR207 entry clone (reverse).
DOI: 10.6084/m9.figshare.20193576
title: Additional file 14 of Imipramine and olanzapine block apoE4-catalyzed polymerization of Aβ and show evidence of improving Alzheimer’s disease cognition

description: Additional file 14. Summary statistics of NACC data analyses. (A, B) Subject information for MMSE models comparing (A) imipramine and other antidepressants or (B) olanzapine and other antipsychotics, including age, sex, baseline MMSE score, and drug exposure time. (C, D) Subject information for clinical diagnosis reversion models comparing (C) imipramine and other antidepressants or (D) olanzapine and other antipsychotics, including age, sex, baseline MMSE score, drug exposure time, number of subjects with reversions, and number of reversions per subject. (E, F) Subject information for clinical diagnosis conversion models comparing (E) imipramine and other antidepressants or (F) olanzapine and other antipsychotics, including age, sex, baseline MMSE score, drug exposure time, number of subjects with conversions, and number of conversions per subject. (G, H) Subject information for multiple medications models comparing (G) imipramine, doxepin, fluoxetine, citalopram, and all other antidepressants or (H) olanzapine, aripiprazole, quetiapine, and all other antipsychotics, including age, sex, baseline MMSE score, drug exposure time, number of subjects with reversions, and number of reversions per subject. (I) Complete test statistics and degrees of freedom for all statistical tests.
DOI: 10.6084/m9.figshare.20193582
title: Additional file 15 of Imipramine and olanzapine block apoE4-catalyzed polymerization of Aβ and show evidence of improving Alzheimer’s disease cognition

description: Additional file 15. Custom computer code generated for NACC data analysis. Computer code written in SAS and used to perform all statistical analyses of NACC data is provided in a text file. Computer code written in R and used to generate plots of NACC data is provided as an R file.
DOI: 10.6084/m9.figshare.20193576.v1
title: Additional file 14 of Imipramine and olanzapine block apoE4-catalyzed polymerization of Aβ and show evidence of improving Alzheimer’s disease cognition

description: Additional file 14. Summary statistics of NACC data analyses. (A, B) Subject information for MMSE models comparing (A) imipramine and other antidepressants or (B) olanzapine and other antipsychotics, including age, sex, baseline MMSE score, and drug exposure time. (C, D) Subject information for clinical diagnosis reversion models comparing (C) imipramine and other antidepressants or (D) olanzapine and other antipsychotics, including age, sex, baseline MMSE score, drug exposure time, number of subjects with reversions, and number of reversions per subject. (E, F) Subject information for clinical diagnosis conversion models comparing (E) imipramine and other antidepressants or (F) olanzapine and other antipsychotics, including age, sex, baseline MMSE score, drug exposure time, number of subjects with conversions, and number of conversions per subject. (G, H) Subject information for multiple medications models comparing (G) imipramine, doxepin, fluoxetine, citalopram, and all other antidepressants or (H) olanzapine, aripiprazole, quetiapine, and all other antipsychotics, including age, sex, baseline MMSE score, drug exposure time, number of subjects with reversions, and number of reversions per subject. (I) Complete test statistics and degrees of freedom for all statistical tests.
DOI: 10.6084/m9.figshare.20193582.v1
title: Additional file 15 of Imipramine and olanzapine block apoE4-catalyzed polymerization of Aβ and show evidence of improving Alzheimer’s disease cognition

description: Additional file 15. Custom computer code generated for NACC data analysis. Computer code written in SAS and used to perform all statistical analyses of NACC data is provided in a text file. Computer code written in R and used to generate plots of NACC data is provided as an R file.
DOI: 10.6084/m9.figshare.20193609
title: Additional file 6 of Imipramine and olanzapine block apoE4-catalyzed polymerization of Aβ and show evidence of improving Alzheimer’s disease cognition

description: Additional file 6. Design of experiments (DOE) assay optimization data. Experimental conditions and raw data for (A) Half-fraction factorial experiment, (B) Response surface experiment #1, and (C) Response surface experiment #2. The RunOrder column indicates randomized order in which the different experimental conditions were prepared in the wells of a plate. The CenterPt column indicates whether the experimental condition is a center point (0) or not (1). The PtType column indicates whether the experimental condition is a corner or axial point (-1 or 1), or a center point (0). The Blocks column indicates whether the experimental condition was included in a single plate run on one day (1) or was included in a second plate repeating the entire experiment on a different day (2). The AUC ThT intensity column indicates the integrated area under the curve of ThT fluorescence intensity measured by the plate reader in arbitrary units (a.u.) over the entire experiment duration. The Fold-change ThT intensity column indicates the fold-change in ThT fluorescence intensity from the beginning to the end of the experiment.
DOI: 10.6084/m9.figshare.20193609.v1
title: Additional file 6 of Imipramine and olanzapine block apoE4-catalyzed polymerization of Aβ and show evidence of improving Alzheimer’s disease cognition

description: Additional file 6. Design of experiments (DOE) assay optimization data. Experimental conditions and raw data for (A) Half-fraction factorial experiment, (B) Response surface experiment #1, and (C) Response surface experiment #2. The RunOrder column indicates randomized order in which the different experimental conditions were prepared in the wells of a plate. The CenterPt column indicates whether the experimental condition is a center point (0) or not (1). The PtType column indicates whether the experimental condition is a corner or axial point (-1 or 1), or a center point (0). The Blocks column indicates whether the experimental condition was included in a single plate run on one day (1) or was included in a second plate repeating the entire experiment on a different day (2). The AUC ThT intensity column indicates the integrated area under the curve of ThT fluorescence intensity measured by the plate reader in arbitrary units (a.u.) over the entire experiment duration. The Fold-change ThT intensity column indicates the fold-change in ThT fluorescence intensity from the beginning to the end of the experiment.
DOI: 10.6084/m9.figshare.20193618
title: Additional file 8 of Imipramine and olanzapine block apoE4-catalyzed polymerization of Aβ and show evidence of improving Alzheimer’s disease cognition

description: Additional file 8. Exploratory drug screen results. (A) Detailed information about the 134 hit compounds identified in the exploratory screen. (B) BBB permeability for the 134 hit compounds identified in the exploratory screen, as determined by a literature search. Positive BBB qualities were found for 87 compounds (labeled in green), negative BBB qualities were found for 41 compounds (labeled in red), and no information was found for 6 compounds (labeled in yellow).
DOI: 10.6084/m9.figshare.20193618.v1
title: Additional file 8 of Imipramine and olanzapine block apoE4-catalyzed polymerization of Aβ and show evidence of improving Alzheimer’s disease cognition

description: Additional file 8. Exploratory drug screen results. (A) Detailed information about the 134 hit compounds identified in the exploratory screen. (B) BBB permeability for the 134 hit compounds identified in the exploratory screen, as determined by a literature search. Positive BBB qualities were found for 87 compounds (labeled in green), negative BBB qualities were found for 41 compounds (labeled in red), and no information was found for 6 compounds (labeled in yellow).
DOI: 10.6084/m9.figshare.20193678
title: Additional file 2 of Predictors of patient safety activities among registered nurses and nurse aides in long-term care facilities: cross-sectional study

description: Additional file 2:
DOI: 10.6084/m9.figshare.20193678.v1
title: Additional file 2 of Predictors of patient safety activities among registered nurses and nurse aides in long-term care facilities: cross-sectional study

description: Additional file 2:
DOI: 10.6084/m9.figshare.20193915
title: Additional file 3 of Practices of patient engagement in drug development: a systematic scoping review

description: Additional file 3. Data extraction spreadsheet.
DOI: 10.6084/m9.figshare.20193915.v1
title: Additional file 3 of Practices of patient engagement in drug development: a systematic scoping review

description: Additional file 3. Data extraction spreadsheet.
DOI: 10.6084/m9.figshare.20047199
title: Additional file 2 of Virtual ChIP-seq: predicting transcription factor binding by learning from the transcriptome

description: Additional file 2 Office Open XML Workbook (XLSX): Supplemental tables.
DOI: 10.6084/m9.figshare.20047199.v1
title: Additional file 2 of Virtual ChIP-seq: predicting transcription factor binding by learning from the transcriptome

description: Additional file 2 Office Open XML Workbook (XLSX): Supplemental tables.
DOI: 10.6084/m9.figshare.20194074
title: Additional file 2 of Geographic range size and speciation in honeyeaters

description: Additional file 2: Table S1. PGLS results (both TreePLtree and MCMCtree tree). Table S2. SEM results TreePL tree. Table S3. SEM results MCMCtree tree. Table S4. SEM results island vs. continental species TreePL tree. Table S5. SEM results island vs continental species MCMCtree tree. Table S6. INLA model results (bothTreePL tree and MCMCtree tree). TableS7. FiSSE results (TreePL tree). TableS8. FiSSE results (MCMCtree tree). Table S9. HiSSE results (TreePL tree). Table S10. HiSSE results (MCMCtree tree). Table S11. Honeyeater trait dataset. Table S12. Accession table, contianing the GenBank accession numbers and list of species and outgroups included in this study. Table S13. Simulated occurrence data for missing honeyeater species.
DOI: 10.6084/m9.figshare.20194074.v1
title: Additional file 2 of Geographic range size and speciation in honeyeaters

description: Additional file 2: Table S1. PGLS results (both TreePLtree and MCMCtree tree). Table S2. SEM results TreePL tree. Table S3. SEM results MCMCtree tree. Table S4. SEM results island vs. continental species TreePL tree. Table S5. SEM results island vs continental species MCMCtree tree. Table S6. INLA model results (bothTreePL tree and MCMCtree tree). TableS7. FiSSE results (TreePL tree). TableS8. FiSSE results (MCMCtree tree). Table S9. HiSSE results (TreePL tree). Table S10. HiSSE results (MCMCtree tree). Table S11. Honeyeater trait dataset. Table S12. Accession table, contianing the GenBank accession numbers and list of species and outgroups included in this study. Table S13. Simulated occurrence data for missing honeyeater species.
DOI: 10.6084/m9.figshare.20194098
title: Additional file 3 of Effectiveness of primary school-based interventions in improving oral health of children in low- and middle-income countries: a systematic review and meta-analysis

description: Additional file 3. Characteristics of included studies. The document provides characteristics of included studies with information on: WHO region, author(s) and year of publication, country, participants age, intervention design, outcomes measured and study design.
DOI: 10.6084/m9.figshare.20194098.v1
title: Additional file 3 of Effectiveness of primary school-based interventions in improving oral health of children in low- and middle-income countries: a systematic review and meta-analysis

description: Additional file 3. Characteristics of included studies. The document provides characteristics of included studies with information on: WHO region, author(s) and year of publication, country, participants age, intervention design, outcomes measured and study design.
DOI: 10.6084/m9.figshare.20194104
title: Additional file 4 of Effectiveness of primary school-based interventions in improving oral health of children in low- and middle-income countries: a systematic review and meta-analysis

description: Additional file 4. Studies with positive effect on oral health outcomes. The document provides characteristics of studies with positive effect on oral health outcomes including author(s) and year of publication, study design, intervention design, duration of intervention and effect of intervention compared to controls.
DOI: 10.6084/m9.figshare.20194104.v1
title: Additional file 4 of Effectiveness of primary school-based interventions in improving oral health of children in low- and middle-income countries: a systematic review and meta-analysis

description: Additional file 4. Studies with positive effect on oral health outcomes. The document provides characteristics of studies with positive effect on oral health outcomes including author(s) and year of publication, study design, intervention design, duration of intervention and effect of intervention compared to controls.
DOI: 10.6084/m9.figshare.20194122
title: Additional file 1 of Semantic web data warehousing for caGrid

description: Additional file 1: List of external ontology URLs. (LIST 586 bytes)
DOI: 10.6084/m9.figshare.20194122.v1
title: Additional file 1 of Semantic web data warehousing for caGrid

description: Additional file 1: List of external ontology URLs. (LIST 586 bytes)
DOI: 10.6084/m9.figshare.20194128.v1
title: Additional file 2 of Semantic web data warehousing for caGrid

description: Additional file 2: N-Triple data for caTissue CollectionProtocol, Participant, and Specimen individuals. (NTP 1 MB)
DOI: 10.6084/m9.figshare.20194128
title: Additional file 2 of Semantic web data warehousing for caGrid

description: Additional file 2: N-Triple data for caTissue CollectionProtocol, Participant, and Specimen individuals. (NTP 1 MB)
DOI: 10.6084/m9.figshare.20194131
title: Additional file 3 of Semantic web data warehousing for caGrid

description: Additional file 3: caArray individual Linkages in N-Triple format. (NTP 2 MB)
DOI: 10.6084/m9.figshare.20194131.v1
title: Additional file 3 of Semantic web data warehousing for caGrid

description: Additional file 3: caArray individual Linkages in N-Triple format. (NTP 2 MB)
DOI: 10.6084/m9.figshare.20194137
title: Additional file 4 of Semantic web data warehousing for caGrid

description: Additional file 4: caArray Experiment Data and Annotation s in N-Triple format. (NTP 2 MB)
DOI: 10.6084/m9.figshare.20194137.v1
title: Additional file 4 of Semantic web data warehousing for caGrid

description: Additional file 4: caArray Experiment Data and Annotation s in N-Triple format. (NTP 2 MB)
DOI: 10.6084/m9.figshare.20194149.v1
title: Additional file 6 of Semantic web data warehousing for caGrid

description: Additional file 6: A TRREE inferencing rule that describes an inferred relationship between CellSpecimen s in caTissue and Source s in caArray. The relationship here is derivation, as described by the derived_from and derived_by properties. This rule finds all caArray Sources that have a TermBasedCharacteristic where the Term value matches the Label of a caTissue CellSpecimen. The Label used is found through the NCIt term nci:Label. (PIE 1 KB)
DOI: 10.6084/m9.figshare.20194143
title: Additional file 5 of Semantic web data warehousing for caGrid

description: Additional file 5: caArray SourceCharacteristic s in N-Triple format. (NTP 6 MB)
DOI: 10.6084/m9.figshare.20194143.v1
title: Additional file 5 of Semantic web data warehousing for caGrid

description: Additional file 5: caArray SourceCharacteristic s in N-Triple format. (NTP 6 MB)
DOI: 10.6084/m9.figshare.20194149
title: Additional file 6 of Semantic web data warehousing for caGrid

description: Additional file 6: A TRREE inferencing rule that describes an inferred relationship between CellSpecimen s in caTissue and Source s in caArray. The relationship here is derivation, as described by the derived_from and derived_by properties. This rule finds all caArray Sources that have a TermBasedCharacteristic where the Term value matches the Label of a caTissue CellSpecimen. The Label used is found through the NCIt term nci:Label. (PIE 1 KB)
DOI: 10.6084/m9.figshare.20194155
title: Additional file 7 of Semantic web data warehousing for caGrid

description: Additional file 7: SPARQL query used to retrieve the clinical diagnosis for the cell lines used in GEO GSE5949. The query takes advantage of the inferred relationship derived_from that is described in Additional file 6. (SPARQL 2 KB)
DOI: 10.6084/m9.figshare.20194155.v1
title: Additional file 7 of Semantic web data warehousing for caGrid

description: Additional file 7: SPARQL query used to retrieve the clinical diagnosis for the cell lines used in GEO GSE5949. The query takes advantage of the inferred relationship derived_from that is described in Additional file 6. (SPARQL 2 KB)
DOI: 10.6084/m9.figshare.20194161
title: Additional file 8 of Semantic web data warehousing for caGrid

description: Additional file 8: Diagnoses for hybridizations, tab separated. (TXT 13 KB)
DOI: 10.6084/m9.figshare.20194161.v1
title: Additional file 8 of Semantic web data warehousing for caGrid

description: Additional file 8: Diagnoses for hybridizations, tab separated. (TXT 13 KB)
DOI: 10.5281/zenodo.6779756
title: Fire data cube for 2020

description: This is a 50 km x 50 km collocated dataset for fire analysis and verification. It contains 1) Burned areas from ESA-CCI 2) Actiive fires from MODIS 3) ignition points 4) probabilistic forecast for ignitions pil_2020.nc 5) deterministic forecast for ignitions WEL2_LIHM_2020_det.nc