cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.22rve7
title: Occurrence Download

description: A dataset containing 0 records in GBIF matching the query:
SELECT "year", GBIF_EEARGCode(1000, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000)) AS eeaCellCode, speciesKey, species, establishmentMeans, degreeOfEstablishment, pathway, COUNT(*) AS occurrences,COUNT(DISTINCT recordedBy) AS distinctObservers FROM occurrence WHERE (GBIF_Within('POLYGON((4.08997 49.82741, 4.90937 49.82741, 4.90937 50.19738,4.08997 50.19738, 4.08997 49.82741))', decimalLatitude, decimalLongitude) = True OR GBIF_Within('POLYGON((5.39117 50.79687, 5.80176 50.79687, 5.80176 51.09087, 5.39117 51.09087, 5.39117 50.79687))', decimalLatitude, decimalLongitude) = True) AND occurrenceStatus = 'PRESENT' AND hasCoordinate = TRUE AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS (issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND "year" IS NOT NULL AND orderKey = 727 GROUP BY "year", eeaCellCode, speciesKey, species, establishmentMeans, degreeOfEstablishment, pathway ORDER BY "year" DESC, eeaCellCode ASC, speciesKey ASC

 The dataset's 0 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019441-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.27110311.v1
title: Supplementary Information 4: Tryptic Digestion of Candidate 7500

description: Thirteen trypsinisations of Candidate 7500 material have been attempted using porcine trypsin, with MALDI MS sizing of the resulting fragments. These trypsinisations did not lead to factor identification using the standard tryptic fingerprint databases.
DOI: 10.6084/m9.figshare.27967128
title: Additional file 5 of Is testicular microlithiasis associated with decreased semen parameters? a systematic review

description: Supplementary Material 5.
DOI: 10.6084/m9.figshare.27967128.v1
title: Additional file 5 of Is testicular microlithiasis associated with decreased semen parameters? a systematic review

description: Supplementary Material 5.
DOI: 10.6084/m9.figshare.27967137
title: Additional file 1 of Relationship between evaluation factors and star ratings for Japanese community healthcare institutions in electronic word-of-mouth reviews: an observational study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27967137.v1
title: Additional file 1 of Relationship between evaluation factors and star ratings for Japanese community healthcare institutions in electronic word-of-mouth reviews: an observational study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27110284
title: Supplementary Information 3: Mass Spectrometry Studies of Candidate 7500

description: Candidate 7500’s multiple peaks in the range <i>m/z</i> 7-8000 in MALDI-TOF MS are variant ions of a unitary polypeptide, namely sSgII-70. This view informs the following analysis, which will argue that the observed heterogeneity in MALDI MS is due to (a) C-terminal truncation (i.e. loss of aa residues from the C-terminus by peptide bond cleavage) and (b) water losses in variable degrees.The core data fittings involve specimen MALDI spectra from ovine and bovine purification runs, analysing a dozen or so MS peaks from each species in the range <i>m/z</i> 7-8000. C-terminal and N-terminal truncations have been tried, based on the SgII-70 sequence deductions, with C-terminal truncation favoured for tightness of fit between observations and matches. The data fitting exercise is then followed by a series of bespoke analyses.
DOI: 10.6084/m9.figshare.27110284.v2
title: Supplementary Information 3: Mass Spectrometry Studies of Candidate 7500

description: Candidate 7500’s multiple peaks in the range <i>m/z</i> 7-8000 in MALDI-TOF MS are variant ions of a unitary polypeptide, namely sSgII-70. This view informs the following analysis, which will argue that the observed heterogeneity in MALDI MS is due to (a) C-terminal truncation (i.e. loss of aa residues from the C-terminus by peptide bond cleavage) and (b) water losses in variable degrees.The core data fittings involve specimen MALDI spectra from ovine and bovine purification runs, analysing a dozen or so MS peaks from each species in the range <i>m/z</i> 7-8000. C-terminal and N-terminal truncations have been tried, based on the SgII-70 sequence deductions, with C-terminal truncation favoured for tightness of fit between observations and matches. The data fitting exercise is then followed by a series of bespoke analyses.
DOI: 10.6084/m9.figshare.27110284.v1
title: Supplementary Information 3: Mass Spectrometry Studies of Candidate 7500

description: Candidate 7500’s multiple peaks in the range <i>m/z</i> 7-8000 in MALDI-TOF MS are variant ions of a unitary polypeptide, namely sSgII-70. This view informs the following analysis, which will argue that the observed heterogeneity in MALDI MS is due to (a) C-terminal truncation (i.e. loss of aa residues from the C-terminus by peptide bond cleavage) and (b) water losses in variable degrees.The core data fittings involve specimen MALDI spectra from ovine and bovine purification runs, analysing a dozen or so MS peaks from each species in the range <i>m/z</i> 7-8000. C-terminal and N-terminal truncations have been tried, based on the SgII-70 sequence deductions, with C-terminal truncation favoured for tightness of fit between observations and matches. The data fitting exercise is then followed by a series of bespoke analyses.
DOI: 10.6084/m9.figshare.27967143
title: Additional file 1 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 1: GH98-1232 SST reconstruction.
DOI: 10.6084/m9.figshare.27967143.v1
title: Additional file 1 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 1: GH98-1232 SST reconstruction.
DOI: 10.6084/m9.figshare.27967146
title: Additional file 2 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 2: GH98-1232 silicoflagellate assemblages.
DOI: 10.6084/m9.figshare.27967146.v1
title: Additional file 2 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 2: GH98-1232 silicoflagellate assemblages.
DOI: 10.6084/m9.figshare.27967149
title: Additional file 3 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 3: KR15-10 WB6 SST reconstruction.
DOI: 10.6084/m9.figshare.27967149.v1
title: Additional file 3 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 3: KR15-10 WB6 SST reconstruction.
DOI: 10.6084/m9.figshare.27967152
title: Additional file 4 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 4: KR15-10 WB6 silicoflagellate assemblages.
DOI: 10.6084/m9.figshare.27967152.v1
title: Additional file 4 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 4: KR15-10 WB6 silicoflagellate assemblages.
DOI: 10.6084/m9.figshare.27967155
title: Additional file 5 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 5: Surface sediment samples and nearby WOA18 annual mean SST.
DOI: 10.6084/m9.figshare.27967155.v1
title: Additional file 5 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 5: Surface sediment samples and nearby WOA18 annual mean SST.
DOI: 10.6084/m9.figshare.27967158
title: Additional file 6 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 6: Silicoflagellate assemblages in surface sediment samples.
DOI: 10.6084/m9.figshare.27967158.v1
title: Additional file 6 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 6: Silicoflagellate assemblages in surface sediment samples.
DOI: 10.6084/m9.figshare.27967161
title: Additional file 7 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 7: Table S1. List of silicoflagellates photos in the North Pacific surface sediment samples.
DOI: 10.6084/m9.figshare.27967161.v1
title: Additional file 7 of Silicoflagellate assemblages in the North Pacific surface sediments: an application of the modern analog method to reconstruct the glacial sea surface temperature in the Japan Sea

description: Additional file 7: Table S1. List of silicoflagellates photos in the North Pacific surface sediment samples.
DOI: 10.6084/m9.figshare.27110170.v1
title: Supplementary Information 2: Assay Methods & Results

description: The paper displays an exemplification of antiorganotrophism (tissue reduction) in vivo utilising ovine materials obtained from adult ewes. Ovine plasma was subjected to a bioassay-guided fractionation utilising a rat organometric assay that was conducted according to a standardised method over four days with intraperitoneal dosing. Organ shrinkage was readily provoked in what is a relatively crude assay in vivo. In cell culture experiments, shrinkage of rat bone marrow stem cells could be readily demonstrated using neat plasma from ovary-intact sheep, with such activity lacking in plasma from ovariectomised sheep
DOI: 10.15468/dl.hshd7p
title: Occurrence Download

description: A dataset containing 397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pleuronichthys cornutus (Temminck & Schlegel, 1846)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 397 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019466-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27967171
title: Additional file 3 of Multimodal genome-wide survey of progressing and non-progressing breast ductal carcinoma in-situ

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.27967171.v1
title: Additional file 3 of Multimodal genome-wide survey of progressing and non-progressing breast ductal carcinoma in-situ

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.27967174
title: Additional file 4 of Multimodal genome-wide survey of progressing and non-progressing breast ductal carcinoma in-situ

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.27967174.v1
title: Additional file 4 of Multimodal genome-wide survey of progressing and non-progressing breast ductal carcinoma in-situ

description: Supplementary Material 4
DOI: 10.15468/dl.jc8cxt
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melaleuca leucadendra (L.) L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Living Specimen"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019468-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27967212.v1
title: Additional file 2 of Seismic clusters and fluids diffusion: a lesson from the 2018 Molise (Southern Italy) earthquake sequence

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.27967212
title: Additional file 2 of Seismic clusters and fluids diffusion: a lesson from the 2018 Molise (Southern Italy) earthquake sequence

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.27967222
title: Additional file 1 of Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae

description: Additional file 1. Supplementary figures. This file contains all Supplementary Figures and the figure captions. Fig. S1 Overview of the cohorts, Fig. S2 Workflow literature review, Fig. S3 Workflow global public cohort, Fig. S4 Workflow GWAS of clinical cohort, Fig. S5 MIC distributions broth microdilution and CLSI clinical breakpoints, Fig. S6 MIC distributions broth microdilution and EUCAST clinical breakpoints, Fig. S7 Ampicillin MICs of group II isolates stratified to methods and cohorts, Fig. S8 Ampicillin MICs of group II sub-groups stratified to different methods, Fig. S9 Circos plots showing the association between PBP3 substitutions and ampicillin/cefotaxime MICs, Fig. S10 Density plot showing the distribution of ftsI mutations, Fig. S11 Distribution of minimum inhibitory concentration based on gradient diffusion strips for the clinical cohort, Fig. S12 Heatmap visualizing the linkage disequilibrium between all amino acid changing variants within the ftsI gene, Fig. S13 Phylogeny of 298 clinical beta-lactamase negative H. influenzae isolates from three European centers (Lübeck, Würzburg and Lisbon), Fig. S14 The haplotype network displaying the 83 combinations of all 44 variants observed in gene ftsI in at least 10 isolates.
DOI: 10.6084/m9.figshare.27967222.v1
title: Additional file 1 of Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae

description: Additional file 1. Supplementary figures. This file contains all Supplementary Figures and the figure captions. Fig. S1 Overview of the cohorts, Fig. S2 Workflow literature review, Fig. S3 Workflow global public cohort, Fig. S4 Workflow GWAS of clinical cohort, Fig. S5 MIC distributions broth microdilution and CLSI clinical breakpoints, Fig. S6 MIC distributions broth microdilution and EUCAST clinical breakpoints, Fig. S7 Ampicillin MICs of group II isolates stratified to methods and cohorts, Fig. S8 Ampicillin MICs of group II sub-groups stratified to different methods, Fig. S9 Circos plots showing the association between PBP3 substitutions and ampicillin/cefotaxime MICs, Fig. S10 Density plot showing the distribution of ftsI mutations, Fig. S11 Distribution of minimum inhibitory concentration based on gradient diffusion strips for the clinical cohort, Fig. S12 Heatmap visualizing the linkage disequilibrium between all amino acid changing variants within the ftsI gene, Fig. S13 Phylogeny of 298 clinical beta-lactamase negative H. influenzae isolates from three European centers (Lübeck, Würzburg and Lisbon), Fig. S14 The haplotype network displaying the 83 combinations of all 44 variants observed in gene ftsI in at least 10 isolates.
DOI: 10.6084/m9.figshare.27967225
title: Additional file 2 of Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae

description: Additional file 2. Supplementary Tables. This file contains all Supplementary Tables. Table S1 Isolates used for the literature review, Table S2 global public pubMLST cohort, Table S3 clinical cohort, Table S4 Previously defined PBP3 resistance groups for Haemophilus influenzae, Table S5 Previously proposed PBP3 group-specific AA substitutions and cefotaxime minimum inhibitory concentrations, Table S6 Consistency index report obtained from the homoplasy analysis, Table S7 Summary of 44 ftsI variants resulting in PBP3 substitutions and occurring in a minimum of 10 isolates of the clinical cohort, Table S8 Haplotypes across 44 protein-altering ftsI variants observed within a minimum of 10 from 247 isolates.
DOI: 10.6084/m9.figshare.27967225.v1
title: Additional file 2 of Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae

description: Additional file 2. Supplementary Tables. This file contains all Supplementary Tables. Table S1 Isolates used for the literature review, Table S2 global public pubMLST cohort, Table S3 clinical cohort, Table S4 Previously defined PBP3 resistance groups for Haemophilus influenzae, Table S5 Previously proposed PBP3 group-specific AA substitutions and cefotaxime minimum inhibitory concentrations, Table S6 Consistency index report obtained from the homoplasy analysis, Table S7 Summary of 44 ftsI variants resulting in PBP3 substitutions and occurring in a minimum of 10 isolates of the clinical cohort, Table S8 Haplotypes across 44 protein-altering ftsI variants observed within a minimum of 10 from 247 isolates.
DOI: 10.6084/m9.figshare.27967228
title: Additional file 3 of Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae

description: Additional file 3. Supplementary Material. This file contains all Supplementary Material in html format and figure captions. Material S1 Interactive histogram of the distribution of the number of variants per isolate for all 322 beta-lactamase-negative isolates, Material S2 Genome-wide variant-based interactive PCA plot, Material S3: Interactive Manhattan plot of the MIC GWAS, Material S4 Interactive Manhattan plot of the resistance status GWAS, Material S5 Interactive version of Fig. 4C, Material S6 Interactive version of Fig. 4D, Material S7 Interactive heatmap visualizing the linkage disequilibrium between all amino acid changing variants within the ftsI gene.
DOI: 10.6084/m9.figshare.27967228.v1
title: Additional file 3 of Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae

description: Additional file 3. Supplementary Material. This file contains all Supplementary Material in html format and figure captions. Material S1 Interactive histogram of the distribution of the number of variants per isolate for all 322 beta-lactamase-negative isolates, Material S2 Genome-wide variant-based interactive PCA plot, Material S3: Interactive Manhattan plot of the MIC GWAS, Material S4 Interactive Manhattan plot of the resistance status GWAS, Material S5 Interactive version of Fig. 4C, Material S6 Interactive version of Fig. 4D, Material S7 Interactive heatmap visualizing the linkage disequilibrium between all amino acid changing variants within the ftsI gene.
DOI: 10.6084/m9.figshare.27967092
title: The SciSO Dataset: Mining Science in Stack Overflow

description: Stack Overflow, often recognized as the go-to resource for software practitioners, has seen a growing trend of discussions around academic research. Yet, little is known about these academic references and how they intersect developers’ needs and interests. To bridge this gap, we presented a novel approach for identifying academic reference links and curated the first comprehensive dataset of academic references on Stack Overflow.This dataset contains 19,582 academic references mined from Stack Overflow posts, answers, comments, etc. as of October 7, 2024.
DOI: 10.6084/m9.figshare.27967092.v1
title: The SciSO Dataset: Mining Science in Stack Overflow

description: Stack Overflow, often recognized as the go-to resource for software practitioners, has seen a growing trend of discussions around academic research. Yet, little is known about these academic references and how they intersect developers’ needs and interests. To bridge this gap, we presented a novel approach for identifying academic reference links and curated the first comprehensive dataset of academic references on Stack Overflow.This dataset contains 19,582 academic references mined from Stack Overflow posts, answers, comments, etc. as of October 7, 2024.
DOI: 10.6084/m9.figshare.27967242
title: Additional file 5 of Pheno-Ranker: a toolkit for comparison of phenotypic data stored in GA4GH standards and beyond

description: Additional file5 (XLSX 32 KB)
DOI: 10.6084/m9.figshare.27967242.v1
title: Additional file 5 of Pheno-Ranker: a toolkit for comparison of phenotypic data stored in GA4GH standards and beyond

description: Additional file5 (XLSX 32 KB)
DOI: 10.15468/dl.kps35b
title: Occurrence Download

description: A dataset containing 7810 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Apera interrupta (L.) P.Beauv."
 ]
}

 The dataset includes 7810 records from 364 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019465-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27967270
title: Additional file 2 of Exercise promotes skeletal muscle growth in adolescents via modulating Mettl3-mediated m6A methylation of MyoD in muscle satellite cells

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.27967270.v1
title: Additional file 2 of Exercise promotes skeletal muscle growth in adolescents via modulating Mettl3-mediated m6A methylation of MyoD in muscle satellite cells

description: Supplementary Material 2.
DOI: 10.15468/dl.pjxkj6
title: Occurrence Download

description: A dataset containing 43042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sebastes maliger (Jordan & Gilbert, 1880)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 43042 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019469-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.badzjb
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glossanodon semifasciatus (Kishinouye, 1904)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 135 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019470-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zssu89
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mespilus germanica L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Living Specimen"
 ]
}

 The dataset includes 24 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019472-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.