cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/zcrdhr8mh9.1
title: RVxCTmax

description: 	We moved 64 larvae to a 30 L container with aerated, carbon-filtered water (water from at ~20°C for three days to acclimate to the experimental temperature. Afterwards, all larvae were staged (Gosner, 1960), weighed, and divided into two treatments: 1) uninfected controls (N = 24) and 2) ranavirus infected (N = 40). The ranavirus used for inoculation was a frog-virus 3-like (FV3) isolate cultured in baby hamster kidney cells (BHK-21) to a concentration of 1.3 x 108 pfu ml-1. Briefly, individual larvae were placed in 750 mL plastic containers with 200 mL of water containing an LD¬100 concentration of 104.25 pfu ml-1 FV3. After 24 hours, 400 mL of water was added along with crushed alfalfa pellets. Uninfected controls underwent a similar protocol except they were only exposed to water.
2.3 Experimental Protocol
	At 2- and 4-days post infection (dpi), the CTmax of 12 randomly selected uninfected and infected larvae was recorded. Individual larvae were placed in a 125 mL flask with 75 mL of water, submerged in a hot water bath (Isotemp 220, Fischer Scientific), and given 5 minutes to acclimate. Starting temperature of CTmax assays averaged 18.8°C with a heating rate of 0.6°C minute-1. Beginning at ~34°C, larvae were prodded with a spatula every minute until they failed to respond to the stimulus, and water temperature was recorded which represented the larval CTmax. Flasks were then placed in a water bath at ~19°C to facilitate recovery. Individuals that failed to recover in < 5 minutes were removed from all analyses. Infected larvae were returned to their respective container and uninfected larvae were euthanized via snap freezing with -80°C EtOH. After each CTmax assay, all materials were sterilized in 10% bleach for > 10 minutes. 
	To determine how the CTmax assay affected ranaviral loads, infected larvae that underwent the CTmax assay at 2 dpi were staged, weighed, and euthanized via snap freezing at 3 dpi. Another eight infected larvae whose CTmax was not measured were randomly selected and euthanized to represent the non-heat shocked group. This process was repeated for the larvae assayed at 4 dpi. All larvae were stored at -80°C.
2.4 Ranavirus DNA Extraction and Quantification
The liver was removed from larvae using flame-sterilized forceps and DNA was extracted using GenCatch™ Plasmid DNA Mini-Prep Kit following the manufacturer’s protocol and stored at -80°C. Extracted DNA was quantified using an Epoch Microplate Spectrophotometer. Viral loads were assessed by real-time qPCR on a StepOnePlus™ Real-Time PCR System using the primers, probe, and thermal cycling protocol designed by Stilwell et al. (2018). For each run all samples were run in duplicate with positive and negative controls along with ten-fold serial dilutions of our FV3 isolate from 10 to 106 PFU mL-1 as standards for sample interpolation. A subset of uninfected controls (N = 6) was analyzed and all tested negative for FV3.
DOI: 10.5258/soton/d2570
title: Dataset supporting an article "All-Optical Switching of Liquid Crystals at Terahertz Frequencies Enabled by Metamaterials".

description: This dataset is supporting the publication "All-Optical Switching of Liquid Crystals at Terahertz Frequencies Enabled by Metamaterials" by B Beddoes et al, in Optics Express. This dataset contains modelling data generated for the falloff of the local electric field around the MM edges. The dataset is split into 3 subfolders for following the electric field at 90 degrees, 45 degrees and 0 degrees to LC alignment. LC alignment in this case is parallel to the straight edges of the MMs. Each sub fold contains the distance from the MM edge "z_#" and the Electric field strength "E_#". 3 MATLAB files which contain the models used to generate the figure 4 plots
DOI: 10.5281/zenodo.6802292
title: Data archive for "Seamless lightning nowcasting with recurrent-convolutional deep learning"

description: This dataset contains the machine learning training data files, pretrained model weights and precomputed results for the paper "Seamless lightning nowcasting with recurrent-convolutional deep learning" published in:<br> Leinonen, J., Hamann, U., & Germann, U. (2022). Seamless Lightning Nowcasting with Recurrent-Convolutional Deep Learning, <em>Artificial Intelligence for the Earth Systems</em>, <em>1</em>(4), e220043, doi:10.1175/AIES-D-22-0043.1.<br> A preprint of the paper can be found at https://arxiv.org/abs/2203.10114. The ML code can be found at https://github.com/MeteoSwiss/c4dl-lightningdl. Download all the files here and extract the contents to the following subdirectories in the ML code directory: Training data (c4dl-patches-*.zip) -&gt; data/2020/ Results (c4dl-results-lightningdl.zip) -&gt; results/ Pretrained models (c4dl-models-lightningdl.zip) -&gt; models/ Additionally, the file c4dl-randomexamples-lightningdl.zip contains the randomly selected examples complementing Figs. 7–9 of the paper, and the file c4dl-inputsamples-lightningdl.zip contains figures showing samples of all the input variables for the three cases shown in Figs. 7–9.
description: The work of JL was supported by the fellowship "Seamless Artificially Intelligent Thunderstorm Nowcasts" from the European Organisation for the Exploitation of Meteorological Satellites (EUMETSAT). The hosting institution of this fellowship is MeteoSwiss in Switzerland.
DOI: 10.17632/bkxfv6yzn5.1
title: ARMH3-mediated recruitment of Phosphatidylinositol 4-kinase beta directs Golgi-to-endosome trafficking and activation of the antiviral effector STING

description: The cGAS-STING pathway mediates cytoplasmic DNA-triggered innate immunity. STING activation is initiated by cyclic-GMP-AMP (cGAMP)-induced translocation from the endoplasmic reticulum and sulfated glycosaminoglycans-induced polymerization at the Golgi. Here we examined the mechanisms underlying STING transport and activation beyond the Golgi. A genome-wide CRISPR–Cas9 screen identified Armadillo-like helical domain-containing protein 3 (ARMH3) as critical for STING activation. Upon cGAMP-triggered translocation, ARMH3 interacted with STING at the Golgi and recruited phosphatidylinositol 4-kinase beta (PI4KB) to synthesize PI4P, which directed STING Golgi-to-endosome trafficking via PI4P-binding proteins AP-1 and GGA2. Disrupting PI4P-dependent lipid transport through RNAi of other PI4P-binding proteins impaired STING activation. Consistently, disturbed lipid composition inhibited STING activation whereas aberrantly elevated cellular PI4P led to cGAS-independent STING activation. Armh3fl/fllLyzCre/Cre mice were susceptible to DNA virus challenge in vivo. Thus, ARMH3 bridges STING and PIK4B to generate PI4P for STING transportation and activation, an interaction conserved in all eukaryotes.
DOI: 10.5519/qd.tykk31aq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.7947599
title: Last mile operational information

description: Examples and actual Last mile delivery round data for 17-06-2021 for the Madrid region for multiple vehicles
DOI: 10.5281/zenodo.7947598
title: Last mile operational information

description: Examples and actual Last mile delivery round data for 17-06-2021 for the Madrid region for multiple vehicles
DOI: 10.6084/m9.figshare.22923453
title: ESM File 7. R code from Directional speakers as a tool for animal vocal communication studies

description: This is an R markdown file with the code used to run all analyses described in the manuscript.
DOI: 10.6084/m9.figshare.22923453.v1
title: ESM File 7. R code from Directional speakers as a tool for animal vocal communication studies

description: This is an R markdown file with the code used to run all analyses described in the manuscript.
DOI: 10.6084/m9.figshare.22923465
title: ESM File 8. Data frames from Directional speakers as a tool for animal vocal communication studies

description: This is an R data file that includes the data frame used for all analyses described in the manuscript.
DOI: 10.6084/m9.figshare.22923465.v1
title: ESM File 8. Data frames from Directional speakers as a tool for animal vocal communication studies

description: This is an R data file that includes the data frame used for all analyses described in the manuscript.
DOI: 10.5281/zenodo.7662404
title: RGB and Thermal Drone Imagery over Forest Stand in Alberta, Canada

description: This dataset contains RGB (wide-angle) and thermal nadir images collected by a drone using an H20T camera. The data was collected on August 30,2022 over an 8 ha forest stand roughly 3.5km away from the Cynthia Hamlet in Alberta, Canada. The region is at an elevation of around 950m above sea level. Pine and aspen make up the majority of the tree species found within the images. More details about the camera can be found at https://www.dji.com/ca/zenmuse-h20-series/specs. There are 814 RGB images having dimensions 4056x3040 and 814 thermal images having dimensions 640x512, taken at the same time. The images are taken at a flight height of 120, and such that there is 75% side overlap and 80% front overlap between successive thermal images. The main purpose of this data is to perform orthomosaicing for the two modalities.
DOI: 10.5281/zenodo.7662405
title: RGB and Thermal Drone Imagery over Forest Stand in Alberta, Canada

description: This dataset contains RGB (wide-angle) and thermal nadir images collected by a drone using an H20T camera. The data was collected on August 30,2022 over an 8 ha forest stand roughly 3.5km away from the Cynthia Hamlet in Alberta, Canada. The region is at an elevation of around 950m above sea level. Pine and aspen make up the majority of the tree species found within the images. More details about the camera can be found at https://www.dji.com/ca/zenmuse-h20-series/specs. There are 814 RGB images having dimensions 4056x3040 and 814 thermal images having dimensions 640x512, taken at the same time. The images are taken at a flight height of 120, and such that there is 75% side overlap and 80% front overlap between successive thermal images. The main purpose of this data is to perform orthomosaicing for the two modalities.
DOI: 10.6084/m9.figshare.22923471
title: S4b from Directional speakers as a tool for animal vocal communication studies

description: a label file indicating the calls start and end times as well as call_type (recruitment or close call) and origin (Source recording, Conventional speaker, Parametric speaker)
DOI: 10.6084/m9.figshare.22923471.v1
title: S4b from Directional speakers as a tool for animal vocal communication studies

description: a label file indicating the calls start and end times as well as call_type (recruitment or close call) and origin (Source recording, Conventional speaker, Parametric speaker)
DOI: 10.5258/soton/d2511
title: Dataset in support of the journal article 'Hollow-core fiber with stable propagation delay between -150°C and +60°C'

description: The dataset contains data underpinning the figures in the journal paper. The figures are as follows: Fig. 1: Calculated effective refractive index neff of the fundamental mode of the NANF-type HCF used in our experiments as a function of wavelength. Fig. 3: Measured TCD of a thinly coated HCF. For comparison, we also show reported data for low-TCD fibers from Furukawa, Linden Photonics, and Yangtze Optical FC, an SMF with standard acrylate coating (coated fiber diameter of 250 m), and an HCF with 75-m coating at temperatures above 60C. Fig.4: Measured phase thermal sensitivity of thinly coated HCF with the corresponding TCD shown on the right y axis. For comparison, previously reported measured data for bare HCF, HCF with 50-m, and extrapolated from 0 and 50-m data for a 10-m coated HCF are also shown.
DOI: 10.5281/zenodo.7947714
title: Truck Booking Costs

description: Booking rates and cancellations fees for a DHL route from Madrid to Barcelona for a 10day advance period
DOI: 10.5281/zenodo.7947713
title: Truck Booking Costs

description: Booking rates and cancellations fees for a DHL route from Madrid to Barcelona for a 10day advance period
DOI: 10.6084/m9.figshare.9970556
title: Phytostabilization of Pb and Cd polluted soils using <i>Helianthus petiolaris</i> as pioneer aromatic plant species

description: The area of soils polluted with heavy metals is increasing due to industrialization and globalization. Aromatic plant species can be a suitable alternative way for agricultural valorization and phytomanagement of such soils by the commercialization of essential oils avoiding risks for the food chain. The potential of growing <i>Helianthus petiolaris</i> in heavy metal polluted soils was assessed in pot experiments using spiked soils and soils from a shooting range. In terms of phytostabilization, <i>H. petiolaris</i> could grow in soils containing 1000 mg/kg Pb<sup>2+</sup>, 50 mg/kg Cd<sup>2+</sup>, accumulating more than three times the soil Cd content in the aerial parts and translocating significant amounts of Pb to the aerial parts when growing in soils polluted with up to 500 mg/kg Pb. When phytostabilization is considered, phytotoxicity of heavy metals strongly depends on the rhizospheric microbial communities, either by mitigating trace element phytotoxicity or promoting plant growth via phytohormone production. So, the effects of heavy metals on the diversity of the rhizospheric bacterial community were assessed using DNA-fingerprinting.
DOI: 10.6084/m9.figshare.9970556.v1
title: Phytostabilization of Pb and Cd polluted soils using <i>Helianthus petiolaris</i> as pioneer aromatic plant species

description: The area of soils polluted with heavy metals is increasing due to industrialization and globalization. Aromatic plant species can be a suitable alternative way for agricultural valorization and phytomanagement of such soils by the commercialization of essential oils avoiding risks for the food chain. The potential of growing <i>Helianthus petiolaris</i> in heavy metal polluted soils was assessed in pot experiments using spiked soils and soils from a shooting range. In terms of phytostabilization, <i>H. petiolaris</i> could grow in soils containing 1000 mg/kg Pb<sup>2+</sup>, 50 mg/kg Cd<sup>2+</sup>, accumulating more than three times the soil Cd content in the aerial parts and translocating significant amounts of Pb to the aerial parts when growing in soils polluted with up to 500 mg/kg Pb. When phytostabilization is considered, phytotoxicity of heavy metals strongly depends on the rhizospheric microbial communities, either by mitigating trace element phytotoxicity or promoting plant growth via phytohormone production. So, the effects of heavy metals on the diversity of the rhizospheric bacterial community were assessed using DNA-fingerprinting.
DOI: 10.6084/m9.figshare.22884191
title: Integrated metabolomic and transcriptomic study of Klebsiella pneumoniae strain: possible inhibitory mechanism of Rutin on strain growth

description: 10 mL pre-incubated culture medium was centrifuged for collection of bacteria cells. The metabolites identification and quantification were also conducted by Beijing iGeneTech Biotechnology Company. Briefly, the freeze-dried samples were mashed with liquid nitrogen, and 50 mg of powder for each sample was transferred into a 1.5 mL EP tube containing 5 mL precooled methanol/water (V:V=3:1) and subjected to vigorous vortexing. Each sample point had 3 independent biological replicates. All samples were extracted at 4˚C overnight. Then, the samples were centrifuged at 13,000 rpm for 15 min at 4˚C and the filtered supernatant (0.22 μm membrane filter) was blow-dried with nitrogen. The samples were redissolved with 50μL isopropanol/acetonitrile/water (V:V:V=2:7:1) and extracted by centrifugation before LC-MS/MS analysis.
DOI: 10.6084/m9.figshare.22884191.v1
title: Integrated metabolomic and transcriptomic study of Klebsiella pneumoniae strain: possible inhibitory mechanism of Rutin on strain growth

description: 10 mL pre-incubated culture medium was centrifuged for collection of bacteria cells. The metabolites identification and quantification were also conducted by Beijing iGeneTech Biotechnology Company. Briefly, the freeze-dried samples were mashed with liquid nitrogen, and 50 mg of powder for each sample was transferred into a 1.5 mL EP tube containing 5 mL precooled methanol/water (V:V=3:1) and subjected to vigorous vortexing. Each sample point had 3 independent biological replicates. All samples were extracted at 4˚C overnight. Then, the samples were centrifuged at 13,000 rpm for 15 min at 4˚C and the filtered supernatant (0.22 μm membrane filter) was blow-dried with nitrogen. The samples were redissolved with 50μL isopropanol/acetonitrile/water (V:V:V=2:7:1) and extracted by centrifugation before LC-MS/MS analysis.
DOI: 10.6084/m9.figshare.22923446
title: Data and Matlab Analysis code for Congruent Visual Cues speed dynamic motor adaptation

description: Data and Matlab Analysis code for Congruent Visual Cues speed dynamic motor adaptation Sae Franklin, Raz Leib, Michael Dimitriou and David W. Franklin <br> matlab code will generate Figures 2, 3 and 4 from the paper as well as produce the neccessary data files (.txt) to run the statistics in the paper. <br> Data Files contain all subjects, trials, and conditions throughout the entire experiment.
DOI: 10.6084/m9.figshare.22923446.v1
title: Data and Matlab Analysis code for Congruent Visual Cues speed dynamic motor adaptation

description: Data and Matlab Analysis code for Congruent Visual Cues speed dynamic motor adaptation Sae Franklin, Raz Leib, Michael Dimitriou and David W. Franklin <br> matlab code will generate Figures 2, 3 and 4 from the paper as well as produce the neccessary data files (.txt) to run the statistics in the paper. <br> Data Files contain all subjects, trials, and conditions throughout the entire experiment.
DOI: 10.5281/zenodo.7913230
title: Vessels and Train Schedules

description: Inbound port and destination port of vessels and Train schedules from Valencia to Barcelona and Valencia to Zaragoza and vice versa of each route.
DOI: 10.5281/zenodo.7913231
title: Vessels Schedules

description: Inbound port and destination port of vessels
DOI: 10.5281/zenodo.7947715
title: Vessels and Train Schedules

description: Inbound port and destination port of vessels and Train schedules from Valencia to Barcelona and Valencia to Zaragoza and vice versa of each route.
DOI: 10.5258/soton/d2630
title: Dataset in support of the journal article 'A 3D-induced pluripotent stem cell-derived human neural culture model to study certain molecular and biochemical aspects of Alzheimer's disease.'

description: This dataset contains: 1. Immunofluorescence data 2. Westernblot data . This dataset contains all the Immunofluorescence data used to generate the data included in Fig 2 and 3. of the paper published in In Vitro Models
DOI: 10.5523/bris.2ramvba12cngh2mujzqsjz2vik
title: Dataset for publication Raman Spectroscopy Sulphur

description: Dataset for publication titled: "Mutual stabilisation of charge-density-wave and monoclinic distortion in sulfur at high pressures"
DOI: 10.6084/m9.figshare.22923983
title: Supplementary Material for: Documented adverse drug reactions and discontinuation of angiotensin converting enzyme inhibitors and angiotensin receptor blockers in chronic kidney disease

description: Background: Angiotensin converting enzyme inhibitors (ACEi) and angiotensin receptor blockers (ARB) are frequently discontinued in patients with chronic kidney disease (CKD). Documented adverse drug reactions (ADRs) in medical records may provide insight into the reasons for treatment discontinuation. Methods: In this retrospective cohort of U.S. veterans from 2005 to 2019, we identified individuals with CKD and a current prescription for an ACEi or ARB (current user group) or a discontinued prescription within the preceding 5 years (discontinued group). Documented ADRs in structured datasets associated with an ACEi or ARB were categorized into 17 pre-specified groups. Logistic regression assessed associations of documented ADRs with treatment discontinuation. Results: There were 882,441 (73.0%) individuals in the current user group and 326,794 (27.0%) in the discontinued group. There were 26,434 documented ADRs, with at least one documented ADR in 7,520 (0.9%) current users and 9,569 (2.9%) of the discontinued group. ADR presence was associated with treatment discontinuation, aOR 4.16 (95% CI 4.03, 4.29). The most common documented ADRs were cough (37.3%), angioedema (14.2%), and allergic reaction (10.4%). ADRs related to angioedema (aOR 3.81, 95% CI 3.47, 4.17), hyperkalemia (aOR 2.03, 95% CI 1.84, 2.24), peripheral edema (aOR 1.53, 95% CI 1.33, 1.77), or acute kidney injury (aOR 1.32, 95% CI 1.15, 1.51) were associated with treatment discontinuation. Conclusions: ADRs leading to drug discontinuation were infrequently documented. ADR types were differentially associated with treatment discontinuation. An understanding of which ADRs lead to treatment discontinuation provides an opportunity to address them at a healthcare system level.
DOI: 10.5519/qd.cx9ftemu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (9 records)
DOI: 10.6084/m9.figshare.22549792
title: CCycleGAN PMB paper

description: Phantom and cardiac ultrasound imaging data for CCycleGAN
DOI: 10.6084/m9.figshare.22549792.v1
title: CCycleGAN PMB paper

description: Phantom and cardiac ultrasound imaging data for CCycleGAN
DOI: 10.25345/c59w09850
title: MassIVE Reanalysis RMSV000000688.1 - Adding MetaData including comprehensive file identifications
title: File identifications were missed in the initial upload. These are added here in this "reanalysis"
DOI: 10.5519/qd.xpg749g0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2572 records)
DOI: 10.5281/zenodo.7905838
title: Genetics and Genomics of Cardiac Channelopathies in India

description: Appendix dataset for thesis. Appendix 1. List of 30 predicted loss-of-function variations with their ACMG/AMP classification Appendix 2. List of 440 nonsynonymous variations with their ACMG/AMP classification Appendix 3. List of 114 unique variations in IndiGenomes with their ACMG/AMP classification Appendix 4: List of variations (as per ClinVar) covered in Cardiac Channelopathy amplicon based multiplex assay Appendix 5: Primer sequences for validation of respective variations
DOI: 10.5281/zenodo.7905837
title: Genetics and Genomics of Cardiac Channelopathies in India

description: Appendix dataset for thesis. Appendix 1. List of 30 predicted loss-of-function variations with their ACMG/AMP classification Appendix 2. List of 440 nonsynonymous variations with their ACMG/AMP classification Appendix 3. List of 114 unique variations in IndiGenomes with their ACMG/AMP classification Appendix 4: List of variations (as per ClinVar) covered in Cardiac Channelopathy amplicon based multiplex assay Appendix 5: Primer sequences for validation of respective variations
DOI: 10.6084/m9.figshare.22922426
title: Complete morphology.xlsx of the Native chicken maintained at College of Poultry Production and Management, Hosur

description: the data collected while conducting the trial from o to 20 weeks of age. the data are presented in the form of excel format <br>
DOI: 10.6084/m9.figshare.22922426.v1
title: Complete morphology.xlsx of the Native chicken maintained at College of Poultry Production and Management, Hosur

description: the data collected while conducting the trial from o to 20 weeks of age. the data are presented in the form of excel format <br>