cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.583172
title: 10 Eadage Models For The Pao1 Kegg Pathways Case Study In Pathcore

description: ensemble Analysis using Denoising Autoencoders for Gene Expression<strong> </strong>(<strong>eADAGE</strong>) is an unsupervised feature construction algorithm developed by Tan et al. that uses an ensemble of neural networks (an ensemble of ADAGE models) to capture biological signatures embedded in the expression compendium. By initializing eADAGE with different random seeds, Tan et al. produced 10 eADAGE models that each extracted k=300 features from the compendium of genome-scale <em>P. aeruginosa</em> data.

eADAGE is described in Tan et al.'s "System-wide automatic extraction of functional signatures in <em>Pseudomonas aeruginosa</em> with eADAGE" (https://doi.org/10.1101/078659).

The code to construct these 10 models is available in this repository: https://bitbucket.org/greenelab/eadage (see eADAGE_construction.sh).
description: {"references": ["Tan, J. et al. (2017). System-wide automatic extraction of functional signatures in Pseudomonas aeruginosa with eADAGE. https://doi.org/10.1101/078659"]}
DOI: 10.6084/m9.figshare.3551682.v1
title: Appendix E. Additional analysis, showing oxygen to be of greater importance at higher altitudes.

description: Additional analysis, showing oxygen to be of greater importance at higher altitudes.
DOI: 10.22021/bbldntz201712
title: The Linked Open British National Bibliography – Books. 1950/2017-12 – N-Triples
DOI: 10.22021/bbldntz201805
title: The Linked Open British National Bibliography – Books. 1950/2018-05 – N-Triples
DOI: 10.22021/bbldrdfz201712
title: The Linked Open British National Bibliography – Books. 1950/2017-12 – RDF/XML
DOI: 10.22021/bbldrdfz201805
title: The Linked Open British National Bibliography – Books. 1950/2018-05 – RDF/XML
DOI: 10.22021/bcldntz201805
title: The Linked Open British National Bibliography – Forthcoming Books. 2018-05 – N-Triples
DOI: 10.22021/bcldrdfz201805
title: The Linked Open British National Bibliography – Forthcoming Books. 2018-05 – RDF/XML
DOI: 10.22021/bsldntz201712
title: The Linked Open British National Bibliography – Serials. 1950/2017-12 – N-Triples
DOI: 10.22021/bsldntz201805
title: The Linked Open British National Bibliography – Serials. 1950/2018-05 – N-Triples
DOI: 10.22021/bsldrdfz201805
title: The Linked Open British National Bibliography – Serials. 1950/2018-05 – RDF/XML
DOI: 10.5281/zenodo.1135198
title: Oerhörnchen Suchbegriffe Dezember 2017

description: Open Data: Suchbegriffe, die von Benutzer*innen auf www.oerhoernchen.de eingegeben wurden.
DOI: 10.5281/zenodo.1135204
title: Oerhörnchen Suchbegriffe Dezember 2017

description: Open Data: Suchbegriffe, die von Benutzer*innen auf www.oerhoernchen.de eingegeben wurden.
DOI: 10.5281/zenodo.1135208
title: Oerhörnchen Suchbegriffe Dezember 2017

description: Open Data: Suchbegriffe, die von Benutzer*innen auf www.oerhoernchen.de eingegeben wurden.
DOI: 10.5281/zenodo.46661
title: Dataset For 'Photoswitchable Basicity Through The Use Of Azoheteroarenes'

description: Dataset to accompany article titled 'Photoswitchable basicity through the use of azoheteroarenes', published in ChemComm.

Included data:

log files for computational work and txt files for extracted shielding tensors for GIAO NMR calculations.

Characterisation of compound 1: NMR (.ir files), IR, MS

UV/vis data (.std or .sd files)
DOI: 10.5281/zenodo.50346
title: Clonal Relationship Of Esbl-Producing Salmonella Strains From Humans And Poultry In North-Eastern Algeria

description: BVET-D-16-00240

A study was conducted to determine antibiotic resistance levels and patterns, and to assess the relationship of avian drug-resistant Salmonella to human clinical isolates in Algéria.
DOI: 10.5281/zenodo.50498
title: Microrna Panel Predicts Lung Adenocarcinoma In Patients  Presenting With Ground-Glass Nodules

description: MicroRNA (miRNA) expression is correlated with tumor histology, differentiation, invasiveness and treatment outcome. We aimed to identify miRNAs whose differential expression might enable early diagnosis of lung adenocarcinoma in patients presenting with ground-glass nodules (GGNs). To identify potential miRNAs of interest, we analyzed the miRNA expression profile of tumor and adjacent non para-tumor tissue in 3 participants by next-generation sequencing (NGS). We then assessed the expression levels of the miRNAs of interest in 73 lung adenocarcinoma presenting with GGNs with matched adjacent non-tumor tissue by quantitative real-time polymerase chain reaction (qRT-PCR). Target genes of our selected miRNA panel were predicted using Miranda with default parameters. Twenty-three miRNAs showed differential expression between tumor and adjacent non-tumor tissue by NGS. Five miRNAs exhibited higher expression in tumor tissue compared to adjacent non-tumor tissue (P＜0.05), eighteen miRNAs demonstrated lower expression in tumor tissue versus adjacent non-tumor tissue (P＜0.05). When qRT-PCR was performed for the 23 miRNAs identified by NGS in the pilot stage, seven were found to have statistically significant expression in tumor versus adjacent non-tumor tissue (P＜0.05). The predicted targets of our miRNAs of interest are frequently associated with cancer signaling pathways. We developed a miRNA panel that could potential predict the presence of lung adenocarcinoma in patients presenting with GGNs.
DOI: 10.5281/zenodo.50530
title: Gtf

description: <strong>protein_coding.gtf</strong>

<strong>noisy.gtf</strong>

<strong>piquant.txt</strong>
DOI: 10.5281/zenodo.50652
title: Data File For The Paper "General Models For The Electrochemical Hydrogen Oxidation And Hydrogen Evolution Reactions – Theoretical Derivation And Experimental Results Under Near Mass-Transport Free Conditions", J. Phys Chem. C., 2016, Doi:10.1021/Acs.Jpcc.6B00011

description: The data in this folder is supplementary information for the paper:<br>
Anthony Kucernak and Christopher Zalitis, "General Models for the Electrochemical Hydrogen Oxidation and Hydrogen Evolution Reactions – Theoretical Derivation and Experimental Results Under Near Mass-Transport Free Conditions", J. Phys Chem. C., 2016, DOI:10.1021/acs.jpcc.6b00011

The information is © Anthony Kucernak

A description of the models used in these files is provided in that paper. Below is a description of the files

Experimental Data.xlsx   -  This file contains the experimental data used to produce figures 6 and 7 in the aforementioned paper<br>
Model.xlsx   -  This file contains verified versions of the Heyrovsky-Volmer, Tafel-Volmer and Heyrovsky-Tafel-Volmer mechanisms developed in the paper mentioned above. These excel spreadsheets may be used to fit experimental data user the Solver function in Excel.

Heyrovsky-Tafel.cdf, Heyrovsky-Tafel-Volmer.cdf, Tafel-Volmer.cdf, Heyrovsky-Volmer.cdf  -  These are "computable document format" files produced using Wolfram Mathematica. They allow easy and quick modification of model parameters to allow real-time exploration of the effect of the parameters on current density (as linear and Tafel plots), hydrogen coverage, Effective Tafel slope, and derived parameters. The CDF viewer is availble to download from the Wolfram site - www.wolfram.com
DOI: 10.6084/m9.figshare.3552660
title: Appendix D. A first approximation of the relationship between diurnal temperature range and insect physiology.

description: A first approximation of the relationship between diurnal temperature range and insect physiology.
DOI: 10.15146/r3rc7t
title: Teste de aula

description: Dataset retirado do site do governo brasileiro para testes.
DOI: 10.22021/bcldntz201712
title: The Linked Open British National Bibliography – Forthcoming Books. 2017-12 – N-Triples
DOI: 10.22021/bcldrdfz201712
title: The Linked Open British National Bibliography – Forthcoming Books. 2017-12 – RDF/XML
DOI: 10.22021/bsldrdfz201712
title: The Linked Open British National Bibliography – Serials. 1950/2017-12 – RDF/XML
DOI: 10.5281/zenodo.1143706
title: Data From: Open Access Levels: A Quantitative Exploration Using Web Of Science And Oadoi Data

description: This is the raw data behind the publication (on PeerJ Preprints):

<strong>Open access levels: a quantitative exploration using Web of Science and oaDOI data</strong>

Across the world there is growing interest in open access publishing among researchers, institutions, funders and publishers alike. It is assumed that open access levels are growing, but hitherto the exact levels and patterns of open access have been hard to determine and detailed quantitative studies are scarce. Using newly available open access status data from oaDOI in Web of Science we are now able to explore year-on-year open access levels across research fields, languages, countries, institutions, funders and topics, and try to relate the resulting patterns to disciplinary, national and institutional contexts. With data from the oaDOI API we also look at the detailed breakdown of open access by types of gold open access (pure gold, hybrid and bronze), using universities in the Netherlands as an example. There is huge diversity in open access levels on all dimensions, with unexpected levels for e.g. Portuguese as language, Astronomy & Astrophysics as research field, countries like Tanzania, Peru and Latvia, and Zika as topic. We explore methodological issues and offer suggestions to improve conditions for tracking open access status of research output. Finally, we suggest potential future applications for research and policy development. We have shared all data and code openly.
description: A  short description of the available files can be found in README.txt
DOI: 10.5281/zenodo.1143707
title: Data From: Open Access Levels: A Quantitative Exploration Using Web Of Science And Oadoi Data

description: This is the raw data behind the publication (on PeerJ Preprints):

<strong>Open access levels: a quantitative exploration using Web of Science and oaDOI data</strong>

Across the world there is growing interest in open access publishing among researchers, institutions, funders and publishers alike. It is assumed that open access levels are growing, but hitherto the exact levels and patterns of open access have been hard to determine and detailed quantitative studies are scarce. Using newly available open access status data from oaDOI in Web of Science we are now able to explore year-on-year open access levels across research fields, languages, countries, institutions, funders and topics, and try to relate the resulting patterns to disciplinary, national and institutional contexts. With data from the oaDOI API we also look at the detailed breakdown of open access by types of gold open access (pure gold, hybrid and bronze), using universities in the Netherlands as an example. There is huge diversity in open access levels on all dimensions, with unexpected levels for e.g. Portuguese as language, Astronomy & Astrophysics as research field, countries like Tanzania, Peru and Latvia, and Zika as topic. We explore methodological issues and offer suggestions to improve conditions for tracking open access status of research output. Finally, we suggest potential future applications for research and policy development. We have shared all data and code openly.
description: A  short description of the available files can be found in README.txt
DOI: 10.5281/zenodo.1145377
title: Blue Native Page

description: Protein-ligand or protein-protein interaction regulates various biological processes. Because these interactions are often mediated by noncovalent bond, the detection of the complexes should be carried out under the conditions where the complexes remain intact. Gel filtration chromatography has been historically used for the analysis of such complexes. However, this method has some drawbacks: a low throughput, dilution effects and requiring the large volumes of buffer and relatively large amounts of specimens. Blue native polyacrylamide gel electrophoresis (BN-PAGE) is an alternative way to analyze macromolecular complexes. It is relatively high throughput and ideal for the downstream experiments, such as multi-dimensional electrophoresis, isolation of the complexes and Western blot. In BN-PAGE, the samples are mixed with a negatively charged dye Coomassie Brilliant blue G-250 (not R-250) for the crude ones or Ponceau S for the purified complex, which binds to proteins and allows for the separation of the complexes according to their molecular sizes during the electrophoresis.
DOI: 10.5281/zenodo.159060
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.31754
title: Data Set 2 For Carbon And Gene Flow Mediated By Virus Life

description: Experimental data sets used for manuscripts associated with coccolithovirus infection of <em>Emiliania huxleyi; </em>and grazing of virus-infected <em>Emiliania huxleyi. </em>Data includes: Flow cytometry; photophysiology, carbon/nitrogen, fatty acid metabolism, sulphur cycling and cell volume.

Please contact Willie Wilson (wilwil@sahfos.ac.uk) for further information.
DOI: 10.5281/zenodo.31988
title: Cumulative Plos Alm Report - October 2015

description: Article-Level Metrics (ALM) measure the reach and online engagement of scholarly works. This PLOS ALM report contains the cumulative stats collected for all works through October 10, 2015. Data are generated by the Lagotto open source software. Go to the Lagotto forum for questions or comments.
DOI: 10.5281/zenodo.45197
title: Development Of A Genus-Specific Antigen Capture Elisa For Orthopoxviruses. Target Selection And Optimized Screening

description: <strong>Raw data for quantification of anti surface protein antibody binding to vaccinia virus.</strong>

Method description

Immuno-negative staining and electron microscopy were performed as described elsewhere (Laue, 2010). Briefly, purified VACV<sub>NYCBOH</sub> particles were inactivated by incubation in freshly prepared 2% PFA in 0.05 M HEPES (pH 7.2), sonicated and immobilized on sample supports for transmission electron microscopy. Biotinylated pAbs were titrated on BSA coated grids, until detection with 5 nm gold nanoparticle coupled streptavidin (British Biocell, Cardiff, United Kingdom) resulted in the same mean background labelling density of ~10 particles per view field at a, 87,000-fold magnification (anti-A27: 0.7 µg/mL; anti-D8: 2 µg/mL; anti-H3: 0.9 µg/mL; anti-L1: 1.9 µg/mL). Negative staining was performed with either 0.1 or 0.5% uranyl acetate solution. For quantification, only IMV particles of the mulberry form, which were found isolated from other particles, were analyzed. Randomized sampling was done in 22 evenly distributed mesh areas with five viral particles analyzed per area. Imaging was done with a Tecnai 12 BioTwin (FEI Corp.) at 120 kV and a 1k digital CCD camera (Megaview III, Olympus Soft Imaging Solutions).
description: Raw data for Publication: "Development of a genus-specific antigen capture ELISA for orthopoxviruses" in PLOS ONE.
DOI: 10.5281/zenodo.50654
title: Ecuador Quake Observed By Sentinel-1

description: We have created a new Sentinel-1 interferogram capturing the massive earthquake that hit Ecuador on 16 April with a magnitude of 7.8. Two Sentinel-1 images have been used in the GEP: one pre event acquired by the satellite on 12 April and the other post event, on 24 April.

The quake occurred as the result of shallow thrust faulting on or near the plate boundary between the Nazca and South America plates, according to the USGS. Ecuador lies above the plate boundary where the Nazca Plate subducts beneath the South American Plate at a velocity of 61 mm/yr. At least 654 people were killed and more than 16,600 were injured, this quake was the worst natural disaster in Ecuador since the 1949 Ambato earthquake.

The Sentinel mission marks a new era in remote sensing aid for disaster response. These satellites play a crucial role in helping manage natural disasters because they provide timely information that can be rapidly processed. The results obtained with interferometry allow the monitoring of ground motion, down to a few mm, on wide areas. This type of information is essential for monitoring shifts from earthquakes, landslides, and volcanic uplift, among others.

In the last year we have seen some impressive InSAR results from Sentinel-1A, the first from this two-satellite constellation, that has been in orbit for two years. On 25 April its identical twin Sentinel-1B was launched. With the two satellites in orbit we will now receive double the amount of data and achieve global coverage in six days.
DOI: 10.5281/zenodo.59887
title: Predicting The Sensory Consequences Of One'S Own Action: First Evidence For Multisensory Facilitation

description: Dataset relative to the following publication:

van Kemenade, B.M., Arikan, B.E., Kircher, T., Straube, B. (2016). Predicting the sensory consequences of one’s own action: First evidence for multisensory facilitation. <em>Attention, Perception, Psychophysics</em> 78:2515–2526
DOI: 10.6084/m9.figshare.3553650.v1
title: Appendix B. Sensitivity analysis of the simulation model for the shape of the dispersal kernel.

description: Sensitivity analysis of the simulation model for the shape of the dispersal kernel.
DOI: 10.6084/m9.figshare.3553911.v1
title: Appendix B. Radiocarbon dates.

description: Radiocarbon dates.
DOI: 10.6084/m9.figshare.3554562.v1
title: Appendix D. ANOVA for the fraction of 15N tracer taken up from deep soil (DF) by populations of individual species grown in mixture.

description: ANOVA for the fraction of 15N tracer taken up from deep soil (DF) by populations of individual species grown in mixture.
DOI: 10.6084/m9.figshare.3554616
title: Appendix D. Time series of the observed annual V-ratio relative to a null model (SIM-8).

description: Time series of the observed annual V-ratio relative to a null model (SIM-8).
DOI: 10.6084/m9.figshare.3554910.v1
title: Appendix B. Classification of phenological stress in Ctor-feeding sites.

description: Classification of phenological stress in Ctor-feeding sites.
DOI: 10.15146/r37c75
title: PCS-5031

description: Data set contains crude information from field research in Brazil
description: live interviews and virtual interviews
DOI: 10.5281/zenodo.1145376
title: Blue Native Page

description: Protein-ligand or protein-protein interaction regulates various biological processes. Because these interactions are often mediated by noncovalent bond, the detection of the complexes should be carried out under the conditions where the complexes remain intact. Gel filtration chromatography has been historically used for the analysis of such complexes. However, this method has some drawbacks: a low throughput, dilution effects and requiring the large volumes of buffer and relatively large amounts of specimens. Blue native polyacrylamide gel electrophoresis (BN-PAGE) is an alternative way to analyze macromolecular complexes. It is relatively high throughput and ideal for the downstream experiments, such as multi-dimensional electrophoresis, isolation of the complexes and Western blot. In BN-PAGE, the samples are mixed with a negatively charged dye Coomassie Brilliant blue G-250 (not R-250) for the crude ones or Ponceau S for the purified complex, which binds to proteins and allows for the separation of the complexes according to their molecular sizes during the electrophoresis.
DOI: 10.5281/zenodo.46662
title: Survey Results From Fisc Exams

description: These data are derived from tests for Field Identification Skills Certificates (FISCs) that have been running for eight years under the aegis of the Botanical Society of Britain and Ireland. These certificates are intended to give the participants and potentially their future or current employers a guide to their skill at plant identification in the field. These day-long tests include a field test and it is from this field test that the data in this paper are derived.

These files contain 238 surveys from the FISCs conducted in Shropshire, UK. From 2007 to 2014 six sites were used,  Sweeney Fen (N 52° 49' 4", W 3° 4' 38"); Ballstone Quarry (N 52° 35' 35", W 2° 34' 35"); Windmill Hill (N 52° 36' 13", W 2° 33' 18"); Aston Locks off-line reserve (N 52° 49' 51", W 2° 59' 18"); The Old River Bed (N 52° 43' 40", W 2° 44' 47"), Shrewsbury and Blakeway Hollow (N 52° 35' 37", W 2° 34' 57"). The sites were chosen to fit the following criteria, which are consistent with the FISC protocols. They are around 2–3 hectares of accessible habitat, which are relatively safe in health and safety terms. They were selected for their habitat, such as unimproved grassland with some scrub areas, or short fen, or not too wet sedge swamp, or broad-leaved woodland. The area to be surveyed was made very clear to the participants – if a smaller area was used within a larger reserve it was fenced or taped off clearly.  It was made clear to participants whether or not hedges were to be surveyed.

The observations are separated into taxa that are accepted to be present; taxa that are unreasonable or known to be incorrect; ‘mythical’ species which don't exist and ‘cautious’ records, with just a generic name. Each column represents the survey of one surveyor.
DOI: 10.5281/zenodo.50293
title: Background Material For Systematic Review Of Literature On Ict Acceptance Among Community Dwelling Elderly

description: This is a zip file containing RIS files and PDF files that provide detailed background information about the study.
DOI: 10.5281/zenodo.50674
title: Lipschitz Quaternions In The Range [−10, 10]^4, Which Induce Bijective 3D Digitized Rotations

description: The file contains Lipschitz quaternions in the range [−10, 10]^4, such that they induce bijective 3D digitized rotations. It is a comma-separated values file format such that each line contains a different quaternion.
DOI: 10.5281/zenodo.50700
title: Linked Data Quality Assessment For Datasets On The Lod Cloud

description: <strong>For more up to date quality metadata, please visit https://w3id.org/lodquator</strong>

This dataset is a collection of TRiG files with quality metadata for different datasets on the LOD cloud. Each dataset was assessed for


	The length of URIs
	Usage of RDF primitives
	Re-use of existing terms
	Usage of undefined terms
	Usage of blank nodes
	Indication for different serialisation formats
	Usage of multiple languages


This data dump is part of the empirical study conducted for the paper "Are LOD Cloud Datasets Well Represented? A Data Representation Quality Survey."

For more information visit http://jerdeb.github.io/lodqa
description: For more up to date quality metadata, please visit https://w3id.org/lodquator