cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4628599
title: Can I Solve it? Identifying the APIs required to complete OSS tasks

description: Python notebooks, R code to perform the survey analysis, survey questions, and experiment page.
DOI: 10.5281/zenodo.4429389
title: Can I Solve it? Identifying the APIs required to complete OSS tasks

description: Python notebooks, R code to perform the survey analysis, survey questions, and experiment page.
DOI: 10.26195/tbh3-ma90
title: Popular Music and Parenting
DOI: 10.6084/m9.figshare.10718282
title: Dataset for omicwas

description: The omicwas package implements ridge regression for cell-type-specific EWAS and differential gene expression. This dataset includes R notebooks and R data files for using omicwas.
DOI: 10.6084/m9.figshare.10718282.v10
title: Dataset for omicwas

description: The omicwas package implements ridge regression for cell-type-specific EWAS and differential gene expression. This dataset includes R notebooks and R data files for using omicwas.
DOI: 10.25442/hku.14184728
title: Supporting data for “Osmosis in aqueous two-phase system and its application in protein encapsulation”

description: This is the raw data to support the thesis titled "Osmosis in aqueous two-phase system and its application in protein encapsulation". The raw data are arranged according to the date of experiment.
DOI: 10.25442/hku.14184728.v1
title: Supporting data for “Osmosis in aqueous two-phase system and its application in protein encapsulation”

description: This is the raw data to support the thesis titled "Osmosis in aqueous two-phase system and its application in protein encapsulation". The raw data are arranged according to the date of experiment.
DOI: 10.3886/e135581
title: Supplementary data for: Hours, Occupations, and Gender Differences in Labor Market Outcomes

description: This depository contains a derived PSID data file which then is used in the paper "Hours, Occupations, and Gender Differences in Labor Market Outcomes," by Erosa, Fuster, Kambourov, and Rogerson to compute the correlation of log wages and log hours within households.
DOI: 10.3886/e135581v1
title: Supplementary data for: Hours, Occupations, and Gender Differences in Labor Market Outcomes

description: This depository contains a derived PSID data file which then is used in the paper "Hours, Occupations, and Gender Differences in Labor Market Outcomes," by Erosa, Fuster, Kambourov, and Rogerson to compute the correlation of log wages and log hours within households.
DOI: 10.6084/m9.figshare.14266472
title: Carga_mortalidad_mun SBA.pdf

description: Carga de Mortalidad
DOI: 10.6084/m9.figshare.14266472.v1
title: Carga_mortalidad_mun SBA.pdf

description: Carga de Mortalidad
DOI: 10.6084/m9.figshare.14266585
title: Additional file 1 of Interrupted time series analysis using autoregressive integrated moving average (ARIMA) models: a guide for evaluating large-scale health interventions

description: Additional file 1. Data for reproducing results in this manuscript.
DOI: 10.6084/m9.figshare.14266585.v1
title: Additional file 1 of Interrupted time series analysis using autoregressive integrated moving average (ARIMA) models: a guide for evaluating large-scale health interventions

description: Additional file 1. Data for reproducing results in this manuscript.
DOI: 10.6084/m9.figshare.14266591
title: Additional file 3 of Interrupted time series analysis using autoregressive integrated moving average (ARIMA) models: a guide for evaluating large-scale health interventions

description: Additional file 3. SAS code for reproducing results in this manuscript.
DOI: 10.6084/m9.figshare.14266588.v1
title: Additional file 2 of Interrupted time series analysis using autoregressive integrated moving average (ARIMA) models: a guide for evaluating large-scale health interventions

description: Additional file 2. R code for reproducing results in this manuscript.
DOI: 10.6084/m9.figshare.14266588
title: Additional file 2 of Interrupted time series analysis using autoregressive integrated moving average (ARIMA) models: a guide for evaluating large-scale health interventions

description: Additional file 2. R code for reproducing results in this manuscript.
DOI: 10.5281/zenodo.4628549
title: Time series of seafloor displacement at GNSS-A sites along the Japan Trench: from March 2011 to June 2020 and before the 2011 Tohoku-oki earthquake

description: <em>DataS1.xlsx</em> contains time series of postseismic seafloor displacements following the 2011 Tohoku-oki earthquake at GNSS-A sites along the Japan Trench with respect to the Eurasian plate of NUVEL-1A model (DeMets et al., 1994), which are derived from the GNSS-A data (Watanabe et al., 2021b) using GARPOS version 1.0.0 (Watanabe et al., 2021c). <em>DataS2.xlsx</em> contains time series of preseismic seafloor displacements before the 2011 Tohoku-oki earthquake at GNSS-A sites along the Japan Trench with respect to the Eurasian plate of NUVEL-1A model (DeMets et al., 1994), which are derived from the GNSS-A data (Watanabe et al., 2021a) using GARPOS version 1.0.0 (Watanabe et al., 2021c). The reference locations of GNSS-A sites are listed in <em>DataS3.xlsx</em>. Note that the precise positions of seafloor acoustic transponders can be available from the GNSS-A dataset (Watanabe et al., 2021a; 2021b).
description: {"references": ["DeMets, C., Gordon, R. G., Argus, D. F., & Stein, S. (1994). Effect of recent revisions to the geomagnetic reversal time scale on estimates of current plate motions. Geophys. Res. Lett., 21, 2191\u20132194. doi:10.1029/94GL02118", "Watanabe, S., Ishikawa, T., Nakamura, Y., & Yokota, Y. (2021a). GNSS-A data obtained at the sites along the Japan Trench before the 2011 Tohoku-oki earthquake (Version 1.0.0). Zenodo, doi:10.5281/zenodo.4528990", "Watanabe, S., Ishikawa, T., Nakamura, Y., & Yokota, Y. (2021b). GNSS-A data obtained at the sites along the Japan Trench from March 2011 to June 2020 (Version 1.0.0). Zenodo, doi:10.5281/zenodo.4529008", "Watanabe, S., Ishikawa, T., Yokota, Y., & Nakamura, Y. (2021c). GARPOS: Analysis tool for GNSS-Acoustic seafloor positioning (Version 1.0.0). Zenodo. doi:10.5281/zenodo.4522027"]}
DOI: 10.6084/m9.figshare.14266797
title: Additional file 3 of Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture

description: Additional file 3: Supplementary File 1
DOI: 10.6084/m9.figshare.14266800
title: Additional file 4 of Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture

description: Additional file 4: Supplementary File 2
DOI: 10.6084/m9.figshare.14266797.v1
title: Additional file 3 of Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture

description: Additional file 3: Supplementary File 1
DOI: 10.6084/m9.figshare.14266800.v1
title: Additional file 4 of Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture

description: Additional file 4: Supplementary File 2
DOI: 10.6084/m9.figshare.14266804
title: Additional file 1 of Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids

description: Additional file 1Species and strain-specific primer sequences used in a two-step RT-PCR to amplify citrus viruses and viroids.
DOI: 10.6084/m9.figshare.14266807
title: Additional file 2 of Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids

description: Additional file 2Descriptive statistics of high-throughput sequencing data generated and the identification of contigs/scaffolds per de novo assembly.
DOI: 10.6084/m9.figshare.14266810.v1
title: Additional file 3 of Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids

description: Additional file 3Descriptive statistics of the TPM values for the different gene accessions used as internal control references.
DOI: 10.6084/m9.figshare.14266804.v1
title: Additional file 1 of Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids

description: Additional file 1Species and strain-specific primer sequences used in a two-step RT-PCR to amplify citrus viruses and viroids.
DOI: 10.6084/m9.figshare.14266813.v1
title: Additional file 4 of Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids

description: Additional file 4Statistical tests performed using the Kruskal-Wallis rank sum test between the data distributions of the different extraction methods and sequencing platform data sets based on transcripts per million (TPM) counts per gene analysed. Significant differences are indicated in bold if the p value &lt; 0.05.
DOI: 10.6084/m9.figshare.14266807.v1
title: Additional file 2 of Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids

description: Additional file 2Descriptive statistics of high-throughput sequencing data generated and the identification of contigs/scaffolds per de novo assembly.
DOI: 10.6084/m9.figshare.14266819.v1
title: Additional file 5 of Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids

description: Additional file 5The subset sizes for which the respective accession obtained a 90% and 95% genome coverage for all sample and subset replicates with read mapping per RNA extraction method and sequencing platform protocol.
DOI: 10.6084/m9.figshare.14266813
title: Additional file 4 of Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids

description: Additional file 4Statistical tests performed using the Kruskal-Wallis rank sum test between the data distributions of the different extraction methods and sequencing platform data sets based on transcripts per million (TPM) counts per gene analysed. Significant differences are indicated in bold if the p value &lt; 0.05.
DOI: 10.6084/m9.figshare.14266810
title: Additional file 3 of Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids

description: Additional file 3Descriptive statistics of the TPM values for the different gene accessions used as internal control references.
DOI: 10.6084/m9.figshare.14266819
title: Additional file 5 of Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids

description: Additional file 5The subset sizes for which the respective accession obtained a 90% and 95% genome coverage for all sample and subset replicates with read mapping per RNA extraction method and sequencing platform protocol.
DOI: 10.6084/m9.figshare.14266834
title: Additional file 3 of Superoxide dismutase (SOD) as a selection criterion for triticale grain yield under drought stress: a comprehensive study on genomics and expression profiling, bioinformatics, heritability, and phenotypic variability

description: Additional file 3.
DOI: 10.6084/m9.figshare.14266834.v1
title: Additional file 3 of Superoxide dismutase (SOD) as a selection criterion for triticale grain yield under drought stress: a comprehensive study on genomics and expression profiling, bioinformatics, heritability, and phenotypic variability

description: Additional file 3.
DOI: 10.6084/m9.figshare.14266842
title: Additional file 1 of Institutional outbreak involving multiple clades of IMP-producing Enterobacter cloacae complex sequence type 78 at a cancer center in Tokyo, Japan

description: Additional file 1: Table S1. Characteristics of each patient from whom carbapenemase-producing Enterobacterales strains were isolated.
DOI: 10.6084/m9.figshare.14266842.v1
title: Additional file 1 of Institutional outbreak involving multiple clades of IMP-producing Enterobacter cloacae complex sequence type 78 at a cancer center in Tokyo, Japan

description: Additional file 1: Table S1. Characteristics of each patient from whom carbapenemase-producing Enterobacterales strains were isolated.
DOI: 10.6084/m9.figshare.14266893
title: Additional file 1 of Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders

description: Additional file 1. Read and assembly statistics. a: Percent of trimmed reads mapping as proper pairs to the assembly using Bowtie2. b: Peptides predicted by TransDecoder. c: Peptides after clustering at 100% identity with CD-HIT.
DOI: 10.6084/m9.figshare.14266893.v1
title: Additional file 1 of Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders

description: Additional file 1. Read and assembly statistics. a: Percent of trimmed reads mapping as proper pairs to the assembly using Bowtie2. b: Peptides predicted by TransDecoder. c: Peptides after clustering at 100% identity with CD-HIT.
DOI: 10.6084/m9.figshare.14266899
title: Additional file 3 of Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders

description: Additional file 3. List of differentially expressed genes and annotations. Includes top 3 BLASTP hits against NCBI’s nonredundant nr database (accessed November 23, 2020).
DOI: 10.6084/m9.figshare.14266899.v1
title: Additional file 3 of Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders

description: Additional file 3. List of differentially expressed genes and annotations. Includes top 3 BLASTP hits against NCBI’s nonredundant nr database (accessed November 23, 2020).
DOI: 10.6084/m9.figshare.14266902
title: Additional file 4 of Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders

description: Additional file 4. N-terminal amino acid alignment of Sp-907/Sp-74867 sequences from Malay et al. [77]. The N-terminal domains of “MaSp-f” sequences in [77] are almost identical to Sp-907/Sp-74867, and differ from those of other MaSp sequences. Alignment generated with M-Coffee.
DOI: 10.6084/m9.figshare.14266905.v1
title: Additional file 5 of Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders

description: Additional file 5. Sample information. Includes collection information (locale and date) for individuals sequenced in this study, as well as GenBank accession numbers.
DOI: 10.6084/m9.figshare.14266905
title: Additional file 5 of Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders

description: Additional file 5. Sample information. Includes collection information (locale and date) for individuals sequenced in this study, as well as GenBank accession numbers.
DOI: 10.6084/m9.figshare.14266908
title: Additional file 6 of Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders

description: Additional file 6. R code used for differential expression analysis.
DOI: 10.6084/m9.figshare.14266908.v1
title: Additional file 6 of Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders

description: Additional file 6. R code used for differential expression analysis.
DOI: 10.6084/m9.figshare.14266902.v1
title: Additional file 4 of Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders

description: Additional file 4. N-terminal amino acid alignment of Sp-907/Sp-74867 sequences from Malay et al. [77]. The N-terminal domains of “MaSp-f” sequences in [77] are almost identical to Sp-907/Sp-74867, and differ from those of other MaSp sequences. Alignment generated with M-Coffee.
DOI: 10.6084/m9.figshare.14266918
title: Additional file 5 of Comparative transcriptome analysis reveals ectopic delta-5 and delta-6 desaturases enhance protective gene expression upon Vibrio vulnificus challenge in Tilapia (Oreochromis niloticus)

description: Additional file 5: Supplementary File S1. DEG between D56 and WT.
DOI: 10.6084/m9.figshare.14266918.v1
title: Additional file 5 of Comparative transcriptome analysis reveals ectopic delta-5 and delta-6 desaturases enhance protective gene expression upon Vibrio vulnificus challenge in Tilapia (Oreochromis niloticus)

description: Additional file 5: Supplementary File S1. DEG between D56 and WT.
DOI: 10.6084/m9.figshare.14266932
title: Additional file 1 of Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

description: Additional file 1: Detailed metadata description of individual samples.
DOI: 10.6084/m9.figshare.14266935.v1
title: Additional file 2 of Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

description: Additional file 2: Detailed TransRate results including the comparison to the respective reference data.
DOI: 10.6084/m9.figshare.14266932.v1
title: Additional file 1 of Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

description: Additional file 1: Detailed metadata description of individual samples.
DOI: 10.6084/m9.figshare.14266935
title: Additional file 2 of Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

description: Additional file 2: Detailed TransRate results including the comparison to the respective reference data.
DOI: 10.6084/m9.figshare.14266944.v1
title: Additional file 5 of Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

description: Additional file 5: Number of genetic variants for each species computed with KisSplice.
DOI: 10.6084/m9.figshare.14266944
title: Additional file 5 of Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

description: Additional file 5: Number of genetic variants for each species computed with KisSplice.
DOI: 10.6084/m9.figshare.14266938
title: Additional file 3 of Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

description: Additional file 3: Detailed BUSCO results for each assembler and species.
DOI: 10.6084/m9.figshare.14266938.v1
title: Additional file 3 of Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

description: Additional file 3: Detailed BUSCO results for each assembler and species.
DOI: 10.6084/m9.figshare.14266950.v1
title: Additional file 7 of Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

description: Additional file 7: Analysis of clusters produced with cd-hit-est (95% sequence identity (-c), 95% length difference cutoff (-S), 95% alignment coverage (-aS)
DOI: 10.6084/m9.figshare.14266950
title: Additional file 7 of Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

description: Additional file 7: Analysis of clusters produced with cd-hit-est (95% sequence identity (-c), 95% length difference cutoff (-S), 95% alignment coverage (-aS)
DOI: 10.6084/m9.figshare.14266947
title: Additional file 6 of Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

description: Additional file 6: Analysis of transcripts after different clustering methods
DOI: 10.6084/m9.figshare.14266951.v1
title: Additional file 1 of Video as an alternative to in-person consultations in outpatient renal transplant recipient follow-up: a qualitative study

description: Additional file 1. English version of the interview guide
DOI: 10.6084/m9.figshare.14266947.v1
title: Additional file 6 of Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species

description: Additional file 6: Analysis of transcripts after different clustering methods
DOI: 10.6084/m9.figshare.14266951
title: Additional file 1 of Video as an alternative to in-person consultations in outpatient renal transplant recipient follow-up: a qualitative study

description: Additional file 1. English version of the interview guide
DOI: 10.6084/m9.figshare.14267044
title: Additional file 1 of Nonlinear ridge regression improves cell-type-specific differential expression analysis

description: Additional file 1: Table S1. Blood cell type proportion in Tsimane Amerindians, Caucasians and Hispanics.
DOI: 10.6084/m9.figshare.14267044.v1
title: Additional file 1 of Nonlinear ridge regression improves cell-type-specific differential expression analysis

description: Additional file 1: Table S1. Blood cell type proportion in Tsimane Amerindians, Caucasians and Hispanics.
DOI: 10.6084/m9.figshare.14267049
title: Additional file 1 of Weighted minimum feedback vertex sets and implementation in human cancer genes detection

description: Additional file 1. .The data of the edges of the compressed network; the ignore operation was used. This file was used for the traditional MFVS computation.
DOI: 10.6084/m9.figshare.14267049.v1
title: Additional file 1 of Weighted minimum feedback vertex sets and implementation in human cancer genes detection

description: Additional file 1. .The data of the edges of the compressed network; the ignore operation was used. This file was used for the traditional MFVS computation.
DOI: 10.6084/m9.figshare.14267052
title: Additional file 2 of Weighted minimum feedback vertex sets and implementation in human cancer genes detection

description: Additional file 2. The data of edges of the compressed network; neither ignore nor ignore_w was used. This file was used for WFVS computation.
DOI: 10.6084/m9.figshare.14267055
title: Additional file 3 of Weighted minimum feedback vertex sets and implementation in human cancer genes detection

description: Additional file 3. The data of the edges of the compressed network; the ignore_w procedure was used. This file was used for WMFVS computation.
DOI: 10.6084/m9.figshare.14267055.v1
title: Additional file 3 of Weighted minimum feedback vertex sets and implementation in human cancer genes detection

description: Additional file 3. The data of the edges of the compressed network; the ignore_w procedure was used. This file was used for WMFVS computation.
DOI: 10.6084/m9.figshare.14267058.v1
title: Additional file 4 of Weighted minimum feedback vertex sets and implementation in human cancer genes detection

description: Additional file 4. The weights of all genes in the network.
DOI: 10.6084/m9.figshare.14267061
title: Additional file 5 of Weighted minimum feedback vertex sets and implementation in human cancer genes detection

description: Additional file 5. The ∆M computed from procedure 3, where the ignore operation was used. This file is necessary when using Additional file 1 to compute the MFVS.
DOI: 10.6084/m9.figshare.14267064
title: Additional file 6 of Weighted minimum feedback vertex sets and implementation in human cancer genes detection

description: Additional file 6. The ∆M computed from procedure 3, where the ignore_w operation was used. This file is necessary when using Additional file 3 to compute the WMFVS.
DOI: 10.6084/m9.figshare.14267052.v1
title: Additional file 2 of Weighted minimum feedback vertex sets and implementation in human cancer genes detection

description: Additional file 2. The data of edges of the compressed network; neither ignore nor ignore_w was used. This file was used for WFVS computation.