cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3599093_d3
title: Additional file 2: of Gene expression comparison of resistant and susceptible Atlantic salmon fry challenged with Infectious Pancreatic Necrosis virus reveals a marked contrast in immune response

description: Enriched GO terms in all comparisons. List of enriched Gene Ontology (GO) terms in all comparisons. GO terms IDs, GO term description, GO category (P: biological process; M: molecular function; C: cellular component), false discovery rate corrected p-value, number of genes with the corresponding GO term among the differentially expressed genes and their microarray IDs, and number of genes with the corresponding GO term in the whole microarray and their microarray IDs are shown. (XLSX 1044Â kb)
DOI: 10.6084/m9.figshare.c.3599177_d6
title: Additional file 1: of Estimating distributions of health state severity for the global burden of disease study

description: Lay descriptions and their disability weights, and the estimated composite SF-12 scores for each health state. The full SF-12 to Disability Weight mapping function can be replicated in R using the loess command with a span of 0.88 on the data in this table. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3599201_d1
title: Additional file 5: of The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100

description: Xanthan production and t-test of the Xanthomonas campestris pv. campestris B100 wild type and mutants H21012 (wxcB), H28110 (wxcK) and H20110 (wxcN). (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3599198_d2
title: Additional file 2: of Investigating the effects of copy number variants on reading and language performance

description: CNV calls of interest. Large CNV calls; CNVs shared between two or more affected co-siblings (extended tables); CNV calls within genes implicated in reading and language; CNV calls overlapping genes implicated in reading and/or language impairments by previous CNV studies; CNV calls overlapping common neuropsychiatric CNVs; CNV calls annotated to ZNF737. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3599201_d3
title: Additional file 4: of The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100

description: Determination of the growth rate of Xanthomonas campestris pv. campestris B100 wild type and mutants H21012 (wxcB), H28110 (wxcK) and H20110 (wxcN) (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3599216_d1
title: Additional file 3 of Tissue enrichment analysis for C. elegans genomics

description: Golden Gene Sets. A list of all the genes used for our benchmarking process. (ZIP 74 kb)
DOI: 10.6084/m9.figshare.c.3599210_d2
title: Additional file 1: of Genes with high penetrance for syndromic and non-syndromic autism typically function within the nucleus and regulate gene expression

description: Full list of monogenic intellectual disabilities used in this study, gene information, relevant phenotypic data, and short references for categorization. (XLSX 138Â kb)
DOI: 10.6084/m9.figshare.c.3599216_d2
title: Additional file 4 of Tissue enrichment analysis for C. elegans genomics

description: Results. A folder containing a complete version of the results we generated for this paper. (ZIP 1597 kb)
DOI: 10.60656/24f1599d42c0444b
title: Custom collection of MWR brightness temperature data from Granada between 27 Jan 2015 and 7 Dec 2024
DOI: 10.6084/m9.figshare.c.3599339_d1
title: MOESM2 of Strategies of offspring investment and dispersal in a spatially structured environment: a theoretical study using ants

description: Additional file 2: Netlogo model code. This file comprises the Netlogo model.
DOI: 10.6084/m9.figshare.c.3599306_d9
title: Additional file 10: of Bayesian reversible-jump for epistasis analysis in genomic studies

description: genomic dataset. (ZIP 9Â kb)
DOI: 10.6084/m9.figshare.c.3599306_d10
title: Additional file 9: of Bayesian reversible-jump for epistasis analysis in genomic studies

description: Text S2. SAS code. (PROC QTL) (SAS 64Â kb)
DOI: 10.6084/m9.figshare.c.3599441_d5
title: MOESM3 of Mapping N-linked glycosylation of carbohydrate-active enzymes in the secretome of Aspergillus nidulans grown on lignocellulose

description: Additional file 3: Table S2. Identified CAZymes and spectrum counts.
DOI: 10.6084/m9.figshare.c.3599471_d6
title: Additional file 7: Table S1. of Estimating the accuracy of muscle response testing: two randomised-order blinded studies

description: Demographics of Practitioners - Experiments 1 & 2. Table S2. 2x2 Table for MRT for each Pair (n=48) in Experiment 1. Table S3. Correlations (r) with p-values among MRT. Table S4. 2x2 Tables for MRT for each Pair in Experiment 2 (n=20). Table S5. Correlations (r) among MRT Accuracy and Practitioner haracteristics for Experiments 1 & 2. p(2-tailed)&lt;0.05. (XLS 75 kb)
DOI: 10.6084/m9.figshare.c.3599492_d1
title: MOESM2 of Engineering transcription factors to improve tolerance against alkane biofuels in Saccharomyces cerevisiae

description: Additional file 2. Additional tables.Table S1. M values of reference gene candidates derived from qPCR data. Table S2. Fold changes of PDR genes expressed in BYL13 stains as compared to BY4741. Table S3. Primers used in this study.
DOI: 10.15468/dl.cnk6dj
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material citation, Specimen)",
 "Country is Mexico",
 "Geometry POLYGON((-109.42648 13.13604,-77.57352 13.13604,-77.57352 25.86396,-109.42648 25.86396,-109.42648 13.13604))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scolopendra sumichrasti Saussure, 1860"
 ]
}

 The dataset includes 30 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032646-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3599507_d1
title: Additional file 1: of Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum

description: Figure S1. Colony diameter (A) and view (B) of P. griseofulvum strain PG3 (PGRI). Spore suspension of PG3 was inoculated on the centre of 55 mm PDA plates and incubated at 24 °C in the dark for up to 10 days post inoculation (dpi). Error bars indicate standard deviations of three biological replicates. Figure S2. Confirmation of the taxonomic classification of the newly sequenced genome of the P. griseofulvum PG3. PG3 sequence was compared with fragments of the beta-tubulin and calmodulin of different Penicillium species retrieved from GenBank. Table S1. SMURF comparison of NRPS, PKS, NRPS-PKS and DMAT between PG3 and the other sequenced Penicillium genomes. Total number of signature proteins include also the "PKS-Like" and "NRPS-Like" proteins. Table S2. List of SM clusters identified in P. griseofulvum PG3. Table S3. List of genes in the patulin gene cluster of Penicillium griseofulvum PG3 and putative function. Table S4. List of genes in the roquefortine C gene cluster of Penicillium griseofulvum PG3 and putative function. Table S5. List of genes in the griseofulvin gene cluster of Penicillium griseofulvum PG3 and putative function. Table S6. List of genes in the penicillin gene cluster of Penicillium griseofulvum PG3 and putative function. Table S7. List of genes in the cyclopiazonic acid gene cluster of Penicillium griseofulvum PG3 and putative function. Table S8. List of genes in the yanuthone D gene cluster of Penicillium griseofulvum PG3 and putative function. Table S9. List of genes in the chanoclavine I gene cluster of Penicillium griseofulvum PG3 and putative function. Table S10. Genbank accession numbers of the marker genes (beta-tubulin and calmodulin) used for the confirmation of the taxonomic classification of PG3. Table S11 List of primers used in this study. (ZIP 448 kb)
DOI: 10.15468/dl.q8bhy9
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Symphimus leucostomus Cope, 1869"
 ]
}

 The dataset includes 30 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032647-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3599594_d2
title: Additional file 1: of Evolution of severe sleep-wake cycle disturbances following traumatic brain injury: a case study in both acute and subacute phases post-injury

description: Raw actigraphy data of the first hospital stay, comprising activity counts and sleep/wake scoring per one-min epoch. (XLS 1734Â kb)
DOI: 10.6084/m9.figshare.c.3599699_d11
title: Additional file 10: Table S4. of Promoter-based identification of novel non-coding RNAs reveals the presence of dicistronic snoRNA-miRNA genes in Arabidopsis thaliana

description: List of 60 lincRNAs containing Telo-box and site II elements. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3599720_d1
title: MOESM5 of Hsa-miR-34a mediated repression of corticotrophin releasing hormone receptor 1 regulates pro-opiomelanocortin expression in patients with complex regional pain syndrome

description: Additional file 5: Table S1. Patient demographics and correlation studies. Sheets 1 and 2. Control and patient information including clinical parameters; Sheet 3. Key; Sheet 4. Pain relief determined using McGill and NRS scores of CRPS patients and their average percent change after receiving ketamine therapy; Sheet 5. Correlation analysis for relative expression of miR-34a, POMC mRNA levels, pain relief, BMI and body weight; Sheets 6 and 7. We analyzed the body weight and BMI reported for two independent cohorts of CRPS patients from previous studies [20, 21]. Sheet 6. Patient information from Goldberg et al. 2010. The treatment regimen in this study was identical to ours; Sheet 7. Patient information from Schwartzman et al. 2009. Treatment regimen differed from our study in that the patients received a lower dose (25 mg/h daily) of ketamine in an outpatient setting for 10 days. In our study ketamine was infused to patients with refractory CRPS over 5.5 days as described [6]. The infusion rate began at 10 mg/h and was increased by 10 mg/h every 2 h until a maximum rate of 40 mg/h was reached. This rate was continued for 120 h and was then tapered off by 10 mg/h every 2 h; Sheet 8. Combining data from all patients including this study show that poor responders to ketamine therapy have significantly lower body weight relative to responders.
DOI: 10.6084/m9.figshare.c.3599723_d1
title: Additional file 3: of Genomic population structure and prevalence of copy number variations in South African Nguni cattle

description: Functional classification of genes covered by CNVRs from this study and those of [5, 29, 30]. (XLSX 1415Â kb)
DOI: 10.6084/m9.figshare.c.3599723_d2
title: Additional file 1: of Genomic population structure and prevalence of copy number variations in South African Nguni cattle

description: HPBs identified in 492 Nguni cattle and the respective genes they cover or lie in close proximity too. (XLSX 66Â kb)
DOI: 10.6084/m9.figshare.c.3599723_d3
title: Additional file 4: of Genomic population structure and prevalence of copy number variations in South African Nguni cattle

description: CNVRs distribution across individuals and genes covered. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.c.3599723_d4
title: Additional file 6: of Genomic population structure and prevalence of copy number variations in South African Nguni cattle

description: Tables demonstrating the representation of biological process, molecular function and cellular components by those genes within and or 10Â Mb downstream of CNVRs identified in Nguni cattle. (XLSX 794Â kb)
DOI: 10.6084/m9.figshare.c.3599723_d5
title: Additional file 5: of Genomic population structure and prevalence of copy number variations in South African Nguni cattle

description: a. CNVRs identified in this study and by [5, 29, 30], the number of animals in the study (ANMLs), the breed (BRD), the number of genes (GEN), CNVRs identified by other studies (CNVR SHRD) and number of genes that are unique to the study (UNIQ GEN). b. Comparisons of genes within CNVRs (GEN) identified within this study with those identified within other breeds [5, 29, 30] revealed 402 genes that were unique to the Nguni. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3599879_d2
title: Additional file 2: of Human papillomavirus infection and p16 expression in the immunocompetent patients with extragenital/extraungual Bowen’s disease

description: The datasets supporting the conclusions of the article. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3599888_d1
title: Additional file 1: of Plasma exosome microRNAs are indicative of breast cancer

description: Spreadsheet containing the complete microRNA sequencing data for cell versus exosomes and normal vs. cancer exosomes pairwise comparisons. (XLSX 109 kb)
DOI: 10.6084/m9.figshare.c.3599906_d1
title: Additional file 4: of RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants

description: Prediction results for RLP genes in the Arabidopsis genome. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3599906_d2
title: Additional file 3: of RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants

description: Prediction results for NBS-encoding genes in the Arabidopsis genome. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.c.3599909_d1
title: Additional file 1: of Elucidation of the genetic basis of variation for stem strength characteristics in bread wheat by Associative Transcriptomics

description: Supplementary dataset 1. Mean trait data as inputted into association models is presented for all traits. Both accession names (as referred to in the text) and sequence identifiers (as names in sequence submissions) are given. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3599906_d4
title: Additional file 1: of RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants

description: Contents of the RGAdb database. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3599909_d2
title: Additional file 6: of Elucidation of the genetic basis of variation for stem strength characteristics in bread wheat by Associative Transcriptomics

description: Supplementary dataset 5. Summary of the best SNP and GEM association results. SNP results include p values, effect sizes, and increasing alleles. GEM results include p values, R2 values, and correlation trend (positive or negative). All results are provided with marker chromosome number and most likely candidate genes. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3600233_d1
title: Additional file 1: of TrkA is amplified in malignant melanoma patients and induces an anti-proliferative response in cell lines

description: Table S1 Histopathological and follow-up information of the 64 MM patients included in the study. Table S2 Genomic amplification hotspots in MM and association test with tumor thickness, related to Figure 1. Table S3 CGH array data of NTRK1 and CDKN2A for 31 primary MM specimens (from GEO Series GSE45354). Table S4 Validation of the aCGH analysis by genomic qPCR, related to Figure 2 and Figure S1. Table S5 Copy number and mRNA expression data for NTRK1 in CCLE melanoma cell lines, related to Figure S2. Table S6 Copy number, mRNA expression, and clinical stage data for NTRK1 in TCGA melanoma samples, related to Figure S2.
DOI: 10.6084/m9.figshare.c.3600224_d2
title: Additional file 9: Table S7. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: Proportion of methylated (&gt;10Â %) CpG sites across chromosomes. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3600242_d1
title: Additional file 1: Table S1. of Fine mapping of QTL and genomic prediction using allele-specific expression SNPs demonstrates that the complex trait of genetic resistance to Marekâ  s disease is predominantly determined by transcriptional regulation

description: Content of custom SNP array. (XLSX 424Â kb)
DOI: 10.6084/m9.figshare.c.3600224_d3
title: Additional file 11: Table S9. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: Non-CpG site coverage and methylation level in relation to genomic features. * denotes percent of sites covered out of total in size fraction. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3600224_d5
title: Additional file 2: Table S2. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: Validation dataset RRBS and RNA-seq read depths. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3600224_d6
title: Additional file 4: Table S3. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: CpG site coverage and methylation level in relation to genomic features. * denotes percent of sites covered out of total in size fraction. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3600260_d1
title: Additional file 1: of Prevalence and risk factors of bovine tuberculosis in dairy cattle in Eritrea

description: Frequency of skin thickness (mm) after 72 h post inoculation in both the avian and bovine sites and the differences within the two (Bovine 72 h - Avian 72 h). The first two columns show the skin thicknesses on the avian site of injection after 72 h of the PPD-A inoculation and their frequencies (frq). The following four columns show the skin thicknesses on the bovine site of injection after 72 h of PPD-B inoculation and their frequencies. The following six columns show the skin thickness differences on the bovine sites versus avian sites of injection after 72 h of inoculations of both PPD-A and PPD-B (PPD-B minus PPD-A) and their subsequent frequencies. (XML 30 kb)
DOI: 10.15468/dl.awgcjc
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primula farinosa var. koreana T.Yamaz."
 ]
}

 The dataset includes 20 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032648-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29278079
title: Supporting Data and Code for: "<i>Metamorphosis reverses the behavioural phenotype in Rana arvalis along a latitudinal gradient</i>"

description: This dataset accompanies a study investigating the regional variation of proactive behavioural traits (boldness, activity, and exploration) and their association with developmental growth across a latitudinal gradient in <i>Rana arvalis</i>. Behavioural assays were conducted at tadpole and froglet developmental stages across five geographic regions spanning two genetically distinct postglacial clusters in northern Europe.<br><br>The dataset includes individual-level behavioural measurements, developmental growth metrics, and associated metadata, along with the R scripts used for data processing and statistical analysis.
DOI: 10.6084/m9.figshare.29278079.v1
title: Supporting Data and Code for: "<i>Metamorphosis reverses the behavioural phenotype in Rana arvalis along a latitudinal gradient</i>"

description: This dataset accompanies a study investigating the regional variation of proactive behavioural traits (boldness, activity, and exploration) and their association with developmental growth across a latitudinal gradient in <i>Rana arvalis</i>. Behavioural assays were conducted at tadpole and froglet developmental stages across five geographic regions spanning two genetically distinct postglacial clusters in northern Europe.<br><br>The dataset includes individual-level behavioural measurements, developmental growth metrics, and associated metadata, along with the R scripts used for data processing and statistical analysis.
DOI: 10.11588/portal.gsi.6900a5c6473d8
title: Hohenzollern-Kunstgewerbehaus H. Hirschwald, Inh. Friedmann und Weber
DOI: 10.6084/m9.figshare.27601239.v2
title: Phylogenomic and genome-based metrics analysis of <i>Candida</i> and related genera in the <i>Saccharomycotina</i>: Contributons to understand phylogenetic divergence

description: The yeast genus <i>Candida </i>includes several medically important and various biotechnologically important species of yeasts. This genus is highly polyphyletic and occurs in most lineages of <i>Saccharomycotina</i>. In the past two decades, more than half of the <i>Candida </i>species have been reassigned into existing or newly introduced genera, but the polyphyly of the genus remains. Various genera, i.e., <i>Kuraishia</i>, <i>Ogataea</i>, <i>Wickerhamiella </i>and <i>Wickerhamomyces</i>, became heterogeneous and polyphyletic with the transfer to those genera of species that were formerly classified in <i>Candida</i>. To fully resolve the polyphyletic feature of <i>Candida </i>and other genera in the <i>Saccharomycotina</i>, a robust phylogenomic analysis using 1 134 genomes of 1 128 species of <i>Saccharomycotina </i>was made. Several genome-based metrics parameters, i.e., the average amino acid identity (AAI) values, the percentage of conserved proteins (POCP), the presence-absence patterns of orthologs (PAPO), and the relative evolutionary divergence (RED), were analyzed to address the phylogenetic relationship of all genera in the <i>Saccharomycotina</i> and to assess genome diversity at different taxon ranks, such as genus, family, order, and class. Fifty-five monophyletic clades and 31 single-species lineages that might be equivalent to genera were recognized based on the phylogenomic analysis, and AAI, PAPO, POCP, and RED genome-based approaches. In addition, the data suggests the presence of 24 new families, 11 new orders and four new classes. Formal taxonomic proposals based on these results will be made elsewhere.
DOI: 10.17632/k6yvv3r8sy
title: MELESTARIKAN EKOSISTEM DARATAN DENGAN MELAKUKAN PENGHIJAUAN DI DAERAH CILEGON

description: Data was gathered with the qualitative method through means of interview. The goal of gathering specific samples to understand the declining environment surrounding Cilegon.
DOI: 10.17632/k6yvv3r8sy.1
title: MELESTARIKAN EKOSISTEM DARATAN DENGAN MELAKUKAN PENGHIJAUAN DI DAERAH CILEGON

description: Data was gathered with the qualitative method through means of interview. The goal of gathering specific samples to understand the declining environment surrounding Cilegon.
DOI: 10.15468/dl.8tramz
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neptunia triquetra",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004711-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive108785.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108785.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.