cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12135177
title: Additional file 16 of Multiple links between 5-methylcytosine content of mRNA and translation

description: Table S8. A: Non-conversion level of high confidence candidate site across the four gradient fractions. Sites marked in red were assessed by amplicon bsRNA-seq. B: Clustering of protein-coding candidate sites across all four gradient fractions - F1234. Sites marked in red were assessed by amplicon bsRNA-seq. C: Clustering of protein-coding candidate sites across three gradient fractions - F234. Sites marked in red were assessed by amplicon bsRNA-seq. D: Differential methylation analysis by linear regression test across the gradient fractions. All high confidence candidate sites with sufficient coverage are included in this analysis. Sites with FDR &lt; 0.05 are highlighted in red, sites with ≥10% relative negative or positive change are highlighted in green and yellow, respectively.
DOI: 10.6084/m9.figshare.7419899.v1
title: A novel effect of geraniin on OPG/RANKL signaling in osteoblasts

description: In this study, the effects of geraniin on osteoprotegerin/receptor activator of nuclear factor-κB ligand(OPG/RANKL) in regulating the proliferation of osteoblasts and suppression of osteoclast-like cells (OLC) in OLC-osteoblast co-cultured system in vitro were investigated. Osteoblasts were cultured and identified with alkaline phosphatase (ALP), gomori stain, and mineralized nodule stain. OLCs were isolated from long bones of Sprague-Dawley (SD) rats and identified with tartrate-resistant acid phosphatase(TRAP) stain. Methyl thiazolyl tetrazolium assay was used to examine the proliferation of osteoblasts, and immunocytochemistry and in situ hybridization to analyze the expression OPG/RANKL in osteoblasts co-cultured with osteoclasts under the action of geraniin, respectively. Geraniin could regulate the proliferation of osteoblasts MC3T3-E1, decrease the number of OLC in OLC-osteoblast co-cultured system, and inhibit the bone resorption areas and resorption pits of OLC in vitro experiments. Geraniin could promote the mRNA and protein expression levels of OPG and suppress those of RANKL in osteoblasts. These results indicate that geraniin has a promoting effect on the proliferation of osteoblasts and an inhibitory effect on the osteoclastic bone-resorption through regulating OPG/RANKL signaling pathway in OLC-OB co-cultured system.
DOI: 10.6084/m9.figshare.7419899
title: A novel effect of geraniin on OPG/RANKL signaling in osteoblasts

description: In this study, the effects of geraniin on osteoprotegerin/receptor activator of nuclear factor-κB ligand(OPG/RANKL) in regulating the proliferation of osteoblasts and suppression of osteoclast-like cells (OLC) in OLC-osteoblast co-cultured system in vitro were investigated. Osteoblasts were cultured and identified with alkaline phosphatase (ALP), gomori stain, and mineralized nodule stain. OLCs were isolated from long bones of Sprague-Dawley (SD) rats and identified with tartrate-resistant acid phosphatase(TRAP) stain. Methyl thiazolyl tetrazolium assay was used to examine the proliferation of osteoblasts, and immunocytochemistry and in situ hybridization to analyze the expression OPG/RANKL in osteoblasts co-cultured with osteoclasts under the action of geraniin, respectively. Geraniin could regulate the proliferation of osteoblasts MC3T3-E1, decrease the number of OLC in OLC-osteoblast co-cultured system, and inhibit the bone resorption areas and resorption pits of OLC in vitro experiments. Geraniin could promote the mRNA and protein expression levels of OPG and suppress those of RANKL in osteoblasts. These results indicate that geraniin has a promoting effect on the proliferation of osteoblasts and an inhibitory effect on the osteoclastic bone-resorption through regulating OPG/RANKL signaling pathway in OLC-OB co-cultured system.
DOI: 10.6084/m9.figshare.14759931
title: Additional file 3 of Identification of DNA methylation biomarkers for risk of liver metastasis in early-stage colorectal cancer

description: Additional file 3: Table S1. Clinical characteristics of the 81 samples from 59 CRC patients included in this study. Table S2. Final 213 prognositc DMRs in Stage II CRC patients. Table S3. Wilcox test results between different age/smoking group for the 213 prognositic DMRs. Table S4. LOOCV model performances. Table S5. Wilcox test results between different age/smoking group for the 23 LIM-predictive DMRs.
DOI: 10.6084/m9.figshare.25188113
title: article supporting data.xlsx

description: Radiation oncology
DOI: 10.6084/m9.figshare.25188113.v1
title: article supporting data.xlsx

description: Radiation oncology
DOI: 10.6084/m9.figshare.14759931.v1
title: Additional file 3 of Identification of DNA methylation biomarkers for risk of liver metastasis in early-stage colorectal cancer

description: Additional file 3: Table S1. Clinical characteristics of the 81 samples from 59 CRC patients included in this study. Table S2. Final 213 prognositc DMRs in Stage II CRC patients. Table S3. Wilcox test results between different age/smoking group for the 213 prognositic DMRs. Table S4. LOOCV model performances. Table S5. Wilcox test results between different age/smoking group for the 23 LIM-predictive DMRs.
DOI: 10.6084/m9.figshare.14759898
title: Additional file 7 of Formation of autotriploid Carassius auratus and its fertility-related genes analysis

description: Additional file 7: Table S7. Male fertility-related genes.
DOI: 10.6084/m9.figshare.14759901
title: Additional file 8 of Formation of autotriploid Carassius auratus and its fertility-related genes analysis

description: Additional file 8: Table S8. Table of F3nRR vs FRCC of fertility-related gene in protein-protein interaction network.
DOI: 10.6084/m9.figshare.14759901.v1
title: Additional file 8 of Formation of autotriploid Carassius auratus and its fertility-related genes analysis

description: Additional file 8: Table S8. Table of F3nRR vs FRCC of fertility-related gene in protein-protein interaction network.
DOI: 10.6084/m9.figshare.14759895.v1
title: Additional file 6 of Formation of autotriploid Carassius auratus and its fertility-related genes analysis

description: Additional file 6: Table S6. Female fertility-related genes.
DOI: 10.6084/m9.figshare.14759904
title: Additional file 9 of Formation of autotriploid Carassius auratus and its fertility-related genes analysis

description: Additional file 9: Table S9. Table of M3nRR vs M4nRR of fertility-related gene in protein-protein interaction network.
DOI: 10.6084/m9.figshare.14759904.v1
title: Additional file 9 of Formation of autotriploid Carassius auratus and its fertility-related genes analysis

description: Additional file 9: Table S9. Table of M3nRR vs M4nRR of fertility-related gene in protein-protein interaction network.
DOI: 10.6084/m9.figshare.14759892
title: Additional file 5 of Formation of autotriploid Carassius auratus and its fertility-related genes analysis

description: Additional file 5: Table S5. Transcript classification based on Kyoto Encyclopedia of Genes and Genomes (KEGG) for DETs in M3nRR vs M4nRR.
DOI: 10.14473/csda/zfdzof/krndus
title: NS_1411_DataFile_bez_jmen.tab

description: Data
DOI: 10.14473/csda/zfdzof/x5bvpm
title: PR11_V1411.pdf

description: Češi a spoření na důchod – listopad 2014. Tisková zpráva CVVM.
DOI: 10.14473/csda/zfdzof/nxyugt
title: PR03_V1411.pdf

description: Občané o hospodářské situaci ČR a o životní úrovni svých domácností – prosinec 2014. Tisková zpráva CVVM.
DOI: 10.14473/csda/zfdzof/qndx1j
title: PR05_V1411.pdf

description: Důvěra ústavním institucím v listopadu 2014. Tisková zpráva CVVM.
DOI: 10.6084/m9.figshare.22624271
title: Additional file 2 of Metabolomics based on GC-MS revealed hub metabolites of pecan seeds germinating at different temperatures

description: Table S2 Metabolites at 15°C
DOI: 10.6084/m9.figshare.22624274.v1
title: Additional file 3 of Metabolomics based on GC-MS revealed hub metabolites of pecan seeds germinating at different temperatures

description: Table S3 Metabolites at 25°C
DOI: 10.6084/m9.figshare.22624271.v1
title: Additional file 2 of Metabolomics based on GC-MS revealed hub metabolites of pecan seeds germinating at different temperatures

description: Table S2 Metabolites at 15°C
DOI: 10.6084/m9.figshare.22624277
title: Additional file 4 of Metabolomics based on GC-MS revealed hub metabolites of pecan seeds germinating at different temperatures

description: Table S4 Metabolites at 30°C
DOI: 10.6084/m9.figshare.22624274
title: Additional file 3 of Metabolomics based on GC-MS revealed hub metabolites of pecan seeds germinating at different temperatures

description: Table S3 Metabolites at 25°C
DOI: 10.6084/m9.figshare.22624277.v1
title: Additional file 4 of Metabolomics based on GC-MS revealed hub metabolites of pecan seeds germinating at different temperatures

description: Table S4 Metabolites at 30°C
DOI: 10.6084/m9.figshare.16862586
title: Discrepancy Between Global and Local Principal Component Analysis on Large-Panel High-Frequency Data

description: In this article, we study the discrepancy between the global principal component analysis (GPCA) and local principal component analysis (LPCA) in recovering the common components of a large-panel high-frequency data. We measure the discrepancy by the total sum of squared differences between common components reconstructed from GPCA and LPCA. The asymptotic distribution of the discrepancy measure is provided when the factor space is time invariant as the dimension <i>p</i> and sample size <i>n</i> tend to infinity simultaneously. Alternatively when the factor space changes, the discrepancy measure explodes under some mild signal condition on the magnitude of time-variation of the factor space. We apply the theory to test the invariance in time of the factor space. The test performs well in controlling the Type I error and detecting time-varying factor spaces. This is checked by extensive simulation studies. A real data analysis provides strong evidences that the factor space is always time-varying within a time span longer than one week.
DOI: 10.6084/m9.figshare.22624259.v1
title: Additional file 2 of Prognostic significance of blood pressure parameters after mechanical thrombectomy according to collateral status

description: Additional file 2.
DOI: 10.6084/m9.figshare.22624259
title: Additional file 2 of Prognostic significance of blood pressure parameters after mechanical thrombectomy according to collateral status

description: Additional file 2.
DOI: 10.5281/zenodo.6684596
title: IN SILICO SCREENING OF TWO-PHOTON ABSORPTION PROPERTIES OF A LARGE SET OF BIS-BF2-DYES

description: This data set is a part of Supporting Info for our work entitled “IN SILICO SCREENING OF TWO-PHOTON ABSORPTION PROPERTIES OF A LARGE SET OF BIS-BF2-DYES” which is published in ChemPhotoChem peer-reviewed scientific journal (doi.org/10.1002/cptc.202200137). In this data set, we provide the XYZ coordinates for the 280 compounds studied in this work.
description: We acknowledge the CNRS for supporting our collaboration in the framework of the ABSOLUTA-IEA grant. R.Z. and B.O. gratefully acknowledge the support from the National Science Centre, Poland (Grant No. 2017/26/M/ST5/00327).
DOI: 10.5281/zenodo.6684597
title: IN SILICO SCREENING OF TWO-PHOTON ABSORPTION PROPERTIES OF A LARGE SET OF BIS-BF2-DYES

description: This data set is a part of Supporting Info for our work entitled “IN SILICO SCREENING OF TWO-PHOTON ABSORPTION PROPERTIES OF A LARGE SET OF BIS-BF2-DYES” which is published in ChemPhotoChem peer-reviewed scientific journal (doi.org/10.1002/cptc.202200137). In this data set, we provide the XYZ coordinates for the 280 compounds studied in this work.
description: We acknowledge the CNRS for supporting our collaboration in the framework of the ABSOLUTA-IEA grant. R.Z. and B.O. gratefully acknowledge the support from the National Science Centre, Poland (Grant No. 2017/26/M/ST5/00327).
DOI: 10.6084/m9.figshare.24202798
title: Additional file 3 of Identifying pyroptosis- and inflammation-related genes in intracranial aneurysms based on bioinformatics analysis

description: Additional file 3. Table S3. The 13 differentially expressed pyroptosis-related genes in IA samples
DOI: 10.6084/m9.figshare.24202798.v1
title: Additional file 3 of Identifying pyroptosis- and inflammation-related genes in intracranial aneurysms based on bioinformatics analysis

description: Additional file 3. Table S3. The 13 differentially expressed pyroptosis-related genes in IA samples
DOI: 10.6084/m9.figshare.24202801
title: Additional file 4 of Identifying pyroptosis- and inflammation-related genes in intracranial aneurysms based on bioinformatics analysis

description: Additional file 4. Table S4. The GSEA result
DOI: 10.6084/m9.figshare.24202801.v1
title: Additional file 4 of Identifying pyroptosis- and inflammation-related genes in intracranial aneurysms based on bioinformatics analysis

description: Additional file 4. Table S4. The GSEA result
DOI: 10.6084/m9.figshare.24202804
title: Additional file 5 of Identifying pyroptosis- and inflammation-related genes in intracranial aneurysms based on bioinformatics analysis

description: Additional file 5. Table S5. The results of GO and KEGG enrichment analysis
DOI: 10.6084/m9.figshare.24202804.v1
title: Additional file 5 of Identifying pyroptosis- and inflammation-related genes in intracranial aneurysms based on bioinformatics analysis

description: Additional file 5. Table S5. The results of GO and KEGG enrichment analysis
DOI: 10.6084/m9.figshare.24202807
title: Additional file 6 of Identifying pyroptosis- and inflammation-related genes in intracranial aneurysms based on bioinformatics analysis

description: Additional file 6. Table S6. The Node table of PPI network. Table S7. The Edge table of PPI network. Table S8. The topological measurements of PPI network
DOI: 10.15468/dl.4z75uz
title: Occurrence Download

description: A dataset containing 7422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Asia",
 "Country is China",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate precision invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Recorded date mismatch, Recorded date invalid, Recorded date unlikely, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names, Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Elevation non numeric, Modified date invalid, Modified date unlikely, Identified date unlikely, Identified date invalid, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, Occurrence status inferred from individual count, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 7422 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021427-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0901590.10fu
title: SH0901590.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0901591.10fu
title: SH0901591.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0901592.10fu
title: SH0901592.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.6q7cxy
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Canada, Chile)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pterocactus K.Schum."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097504-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0901593.10fu
title: SH0901593.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0901594.10fu
title: SH0901594.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0901595.10fu
title: SH0901595.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.