cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4868417
title: Pisum sativum (b) - CRootBox parameter file

description: CRootbox parameter file for Pisum sativum (b).<br><br>from:<br><br>Modelling pea (Pisum sativum) root growth in drying soil. A comparison between observations and model predictions TSEGAYE T, MULLINS C E, DIGGLE A J New Phytologist, 131, 179-189, 1995
DOI: 10.6084/m9.figshare.4868426
title: Pisum sativum (c) - CRootBox parameter file

description: CRootbox parameter file for Pisum sativum (c).<br><br>from:<br><br>Modelling pea (Pisum sativum) root growth in drying soil. A comparison between observations and model predictions TSEGAYE T, MULLINS C E, DIGGLE A J New Phytologist, 131, 179-189, 1995
DOI: 10.6084/m9.figshare.4868399
title: Pisum sativum (a) - CRootBox parameter file

description: CRootbox parameter file for Pisum sativum (a).<br><br>from:<br><br>Modelling the root system architecture of Poaceae. Can we simulate integrated traits from morphological parameters of growth and branching? Pages L, Picon-Cochard C New Phytologist, 204, 149-158, 2014
DOI: 10.6084/m9.figshare.4868396
title: Noccaea caerulescens - CRootBox parameter file

description: CRootbox parameter file for Noccaea caerulescens.<br><br>from:<br><br>Potential and actual root growth variations in root systems: modeling them with a two-step stochastic approach Pages L, Xie J, Serra V Plant and Soil, 373, 723-735, 2013
DOI: 10.6084/m9.figshare.4868426.v1
title: Pisum sativum (c) - CRootBox parameter file

description: CRootbox parameter file for Pisum sativum (c).<br><br>from:<br><br>Modelling pea (Pisum sativum) root growth in drying soil. A comparison between observations and model predictions TSEGAYE T, MULLINS C E, DIGGLE A J New Phytologist, 131, 179-189, 1995
DOI: 10.6084/m9.figshare.4868384
title: Sidelobe Reduction and Capacity Improvement of Open-Loop Collaborative Beamforming in Wireless Sensor Networks

description: <pre>Collaborative beamforming (CBF) with a finite number of collaborating nodes (CNs) produces sidelobes that are highly dependent on the collaborating nodes' locations.</pre><pre>The sidelobes cause interference and affect the communication rate of unintended receivers located within the transmission range.</pre><pre>Nulling is not possible in an open-loop CBF since the collaborating nodes are unable to receive feedback from the receivers.</pre><pre>Hence, the overall sidelobe reduction is required to avoid interference in the directions of the unintended receivers.</pre><pre>However, the impact of sidelobe reduction on the capacity improvement at the unintended receiver has never been reported in previous works.</pre><pre>In this paper, the effect of peak sidelobe (PSL) reduction in CBF on the capacity of an unintended receiver is analyzed.</pre><pre>Three meta-heuristic optimization methods are applied to perform PSL minimization, namely genetic algorithm (GA), particle swarm algorithm (PSO) and a simplified version of the PSO called the weightless swarm algorithm (WSA).</pre><pre>An average reduction of $20 \: \text{dB}$ in PSL alongside $162\%$ capacity improvement is achieved in the worst case scenario with the WSA optimization.</pre><pre>It is discovered that the PSL minimization in the CBF provides capacity improvement at an unintended receiver only if the CBF cluster is small and dense.</pre>
DOI: 10.6084/m9.figshare.4868381
title: Supplementary_data_core_genome_genes.xlsx

description: Core genome and core genome alignment genes for BSI causing E. coli.<br>
DOI: 10.6084/m9.figshare.4868375
title: Lupinus angustifolius - CRootBox parameter file

description: CRootbox parameter file for Lupinus angustifolius.<br><br>from:<br><br>Phenotypic variability and modelling of root structure of wild Lupinus angustifolius genotypes Chen Y L, Dunbabin V M, Postma J A, Diggle A J, Palta J A, Lynch J P, Siddique K H M, Rengel Z Plant and Soil, 348, 345-364, 2011
DOI: 10.6084/m9.figshare.4868384.v1
title: Sidelobe Reduction and Capacity Improvement of Open-Loop Collaborative Beamforming in Wireless Sensor Networks

description: <pre>Collaborative beamforming (CBF) with a finite number of collaborating nodes (CNs) produces sidelobes that are highly dependent on the collaborating nodes' locations.</pre><pre>The sidelobes cause interference and affect the communication rate of unintended receivers located within the transmission range.</pre><pre>Nulling is not possible in an open-loop CBF since the collaborating nodes are unable to receive feedback from the receivers.</pre><pre>Hence, the overall sidelobe reduction is required to avoid interference in the directions of the unintended receivers.</pre><pre>However, the impact of sidelobe reduction on the capacity improvement at the unintended receiver has never been reported in previous works.</pre><pre>In this paper, the effect of peak sidelobe (PSL) reduction in CBF on the capacity of an unintended receiver is analyzed.</pre><pre>Three meta-heuristic optimization methods are applied to perform PSL minimization, namely genetic algorithm (GA), particle swarm algorithm (PSO) and a simplified version of the PSO called the weightless swarm algorithm (WSA).</pre><pre>An average reduction of $20 \: \text{dB}$ in PSL alongside $162\%$ capacity improvement is achieved in the worst case scenario with the WSA optimization.</pre><pre>It is discovered that the PSL minimization in the CBF provides capacity improvement at an unintended receiver only if the CBF cluster is small and dense.</pre>
DOI: 10.6084/m9.figshare.4868381.v1
title: Supplementary_data_core_genome_genes.xlsx

description: Core genome and core genome alignment genes for BSI causing E. coli.<br>
DOI: 10.6084/m9.figshare.4868396.v2
title: Noccaea caerulescens - CRootBox parameter file

description: CRootbox parameter file for Noccaea caerulescens.<br><br>from:<br><br>Potential and actual root growth variations in root systems: modeling them with a two-step stochastic approach Pages L, Xie J, Serra V Plant and Soil, 373, 723-735, 2013
DOI: 10.6084/m9.figshare.4868372
title: Medicago truncatula - CRootBox parameter file

description: CRootbox parameter file for Medicago truncatula.<br><br>from:<br><br>Root Cortical Aerenchyma Enhances the Growth of Maize on Soils with Suboptimal Availability of Nitrogen, Phosphorus, and Potassium Postma J A, Lynch J P PLANT PHYSIOLOGY, 156, 1190-1201, 2011
DOI: 10.6084/m9.figshare.4868396.v1
title: Noccaea caerulescens - CRootBox parameter file

description: CRootbox parameter file for Noccaea caerulescens.<br><br>from:<br><br>Potential and actual root growth variations in root systems: modeling them with a two-step stochastic approach Pages L, Xie J, Serra V Plant and Soil, 373, 723-735, 2013
DOI: 10.6084/m9.figshare.4868357
title: Supplementary Table 10

description: Statistics for cross mapping of genomic features between <i>S. bicolor</i>, <i>S. italica</i>, <i>Z. mays</i> and <i>B. distachyon</i>. Fileset also includes linux command line instructions how detailing how to make the table.
DOI: 10.6084/m9.figshare.4868372.v1
title: Medicago truncatula - CRootBox parameter file

description: CRootbox parameter file for Medicago truncatula.<br><br>from:<br><br>Root Cortical Aerenchyma Enhances the Growth of Maize on Soils with Suboptimal Availability of Nitrogen, Phosphorus, and Potassium Postma J A, Lynch J P PLANT PHYSIOLOGY, 156, 1190-1201, 2011
DOI: 10.17633/rd.brunel.4868351
title: Isabelle files for verification of a hybrid transactional mutex lock

description: This page contains Isabelle theory files for proving correctness of hybrid transactional memory in a modular fashion, leveraging the TMS2 specification and Lesani et al's results, these proofs establish opacity of two novel hybrid versions of the Dalessandro et al.'s transactional mutex lock . Modularisation is based on a concept we refer to as open I/O automata. Download the theory files here. The zip file consists of two folders: <i> naive</i>, a simple implementation and proof, where the fast and slow path both synchronise on the same global variable, and <i> 2-Counter</i>, an improved implementation and proof, where the slow- and fast-path transactions synchronise on different variables, allowing more concurrency. The proofs require Isabelle 2016. If you encounter a problem loading Seq.thy, please make sure imports is set to "../HOLCF". This is a problem with the new Isabelle distribution.
DOI: 10.6084/m9.figshare.4868375.v2
title: Lupinus angustifolius - CRootBox parameter file

description: CRootbox parameter file for Lupinus angustifolius.<br><br>from:<br><br>Phenotypic variability and modelling of root structure of wild Lupinus angustifolius genotypes Chen Y L, Dunbabin V M, Postma J A, Diggle A J, Palta J A, Lynch J P, Siddique K H M, Rengel Z Plant and Soil, 348, 345-364, 2011
DOI: 10.6084/m9.figshare.4868339
title: 2017 04 14 Mesh to estimate noise of intra oral scanner Trios and Carestream

description: wafer imaged with intra oral scanner
DOI: 10.6084/m9.figshare.4868357.v1
title: Supplementary Table 10

description: Statistics for cross mapping of genomic features between <i>S. bicolor</i>, <i>S. italica</i>, <i>Z. mays</i> and <i>B. distachyon</i>. Fileset also includes linux command line instructions how detailing how to make the table.
DOI: 10.6073/pasta/d779e05ec1a1ddde7750a061912bac7b
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 10 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-10. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-10 site. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.4868336
title: skipping on uneven ground

description: It is known that humans intentionally choose skipping in special situations (e.g. when descending stairs, reduced gravity). Although those situations involve uneven locomotion, the dynamics of human skipping on uneven terrain has not yet been addressed. To find the reasons that may motivate this choice, we combined experimental data on humans with numerical simulations. Parameters for modeling were obtained from nine subjects skipping across a single drop in ground level. To model and describe the dynamics of skipping, we used a bipedal spring loaded inverted pendulum. We found that regardless of the leg that steps into the perturbation, leg adjustments in humans occur mostly or only on the trailing leg (landing first after flight phase). When transferring the identified strategies to the numerical model, the capacity of the model to cope with sudden-drop perturbations increased. Thus, simplified control, stability, and robustness might be key reasons to adopt skipping.
DOI: 10.6084/m9.figshare.4868375.v1
title: Lupinus angustifolius - CRootBox parameter file

description: CRootbox parameter file for Lupinus angustifolius.<br><br>from:<br><br>Phenotypic variability and modelling of root structure of wild Lupinus angustifolius genotypes Chen Y L, Dunbabin V M, Postma J A, Diggle A J, Palta J A, Lynch J P, Siddique K H M, Rengel Z Plant and Soil, 348, 345-364, 2011
DOI: 10.6084/m9.figshare.4868312
title: Diprotodon optatum Cranium CT scans

description: This is a dataset of CT scans (DICOM format) of the cranium of <em>Diprotodon optatum</em> (NMV P31299) from the collection of Museum Victoria (https://museumvictoria.com.au/melbournemuseum/discoverycentre/600-million-years/timeline/quaternary/diprotodon/). This fossil was recovered from Pleistocene sediments at Bacchus Marsh in Victoria, Australia. <em>Diprotodon</em> is the largest marsupial known and could have weighed over three tons These scans accompany articles published in PeerJ (https://peerj.com/articles/514/), Journal of Anatomy (http://onlinelibrary.wiley.com/doi/10.1111/joa.12456/abstract), and Memoirs of Museum Victoria ( https://museumvictoria.com.au/about/books-and-journals/journals/memoirs-of-museum-victoria/2010-2019/2016-vol-74-special-issue-in-honour-of-dr-thomas-h-rich/sharp/) that describe the cranium, jaw muscles and endocranial sinusesThis dataset should be cited if used in any publications. <br>
DOI: 10.6084/m9.figshare.4868336.v1
title: skipping on uneven ground

description: It is known that humans intentionally choose skipping in special situations (e.g. when descending stairs, reduced gravity). Although those situations involve uneven locomotion, the dynamics of human skipping on uneven terrain has not yet been addressed. To find the reasons that may motivate this choice, we combined experimental data on humans with numerical simulations. Parameters for modeling were obtained from nine subjects skipping across a single drop in ground level. To model and describe the dynamics of skipping, we used a bipedal spring loaded inverted pendulum. We found that regardless of the leg that steps into the perturbation, leg adjustments in humans occur mostly or only on the trailing leg (landing first after flight phase). When transferring the identified strategies to the numerical model, the capacity of the model to cope with sudden-drop perturbations increased. Thus, simplified control, stability, and robustness might be key reasons to adopt skipping.
DOI: 10.6084/m9.figshare.4868303
title: Back-translating a rodent measure of negative bias into humans: the impact of induced anxiety and unmedicated mood and anxiety disorders

description: All data, task scripts and materials for:<br>Back-translating a rodent measure of negative bias into humans: the impact of induced anxiety and unmedicated mood and anxiety disorders.<br>Negative affective biases are a core feature in the development and maintenance of mood and anxiety disorders and a key target for treatment development. However, recent years have seen a number of promising pre-clinical interventions fail to translate into clinical efficacy in humans. One of the reasons for this is that, in some cases, the translational animal models inadequately scale-up to human symptoms. Addressing this, here we back-translate – i.e. directly adapt - a rodent measure of negative affective bias into humans, and explore its relationship with a) pathological mood and anxiety disorders and b) transient induced anxiety (study 2: within-subject threat of shock; N = 47 asymptomatic). As in prior rodent work, an adapted drift diffusion model was also fitted to reaction time data. <br><br>
DOI: 10.6084/m9.figshare.4868339.v1
title: Trios 0 degrees or 1 test 9.stl

description: wafer imaged with intra oral scanner
DOI: 10.6084/m9.figshare.4868288
title: Biocompatibility of PCL/PLGA-BCP porous scaffold for bone tissue engineering applications

description: In this study, biomimic porous polycaprolactone/poly (lactide-co-glycolide) loading biphasic tricalcium phosphate (PCL/PLGA-BCP) scaffolds were fabricated successfully by solvent evaporation method. The distribution of biphasic tricalcium phosphate (BCP) in polycaprolactone/poly (lactide-co-glycolide) (PCL/PLGA) scaffold was confirmed by micro-computed tomography (micro-CT) scanning, scanning electron microscope (SEM) observation and Energy-dispersive X-ray Spectroscopy (EDS) analysis. The hydrophilicity of the scaffolds was confirmed by contact angle measurement. In <i>in vitro</i> experiments, proliferation of human bone marrow mesenchymal stem cell (hBMSCs) and its osteoblastic differentiation on scaffold were assessed for 1, 2 and 3 weeks using 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay, fluorescence observation, hematoxylin & eosin (H&E) staining and real-time polymerase chain reaction (RT-PCR). In <i>in vivo</i> experiments, ossification was observed using micro-CT analysis and histological staining.
DOI: 10.6084/m9.figshare.4868297
title: HGT in Proteobacteria-part II

description: HGT in human gut microbes: Horizontally transferred genes received by Proteobacteria species
DOI: 10.6084/m9.figshare.4868288.v1
title: Biocompatibility of PCL/PLGA-BCP porous scaffold for bone tissue engineering applications

description: In this study, biomimic porous polycaprolactone/poly (lactide-co-glycolide) loading biphasic tricalcium phosphate (PCL/PLGA-BCP) scaffolds were fabricated successfully by solvent evaporation method. The distribution of biphasic tricalcium phosphate (BCP) in polycaprolactone/poly (lactide-co-glycolide) (PCL/PLGA) scaffold was confirmed by micro-computed tomography (micro-CT) scanning, scanning electron microscope (SEM) observation and Energy-dispersive X-ray Spectroscopy (EDS) analysis. The hydrophilicity of the scaffolds was confirmed by contact angle measurement. In <i>in vitro</i> experiments, proliferation of human bone marrow mesenchymal stem cell (hBMSCs) and its osteoblastic differentiation on scaffold were assessed for 1, 2 and 3 weeks using 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay, fluorescence observation, hematoxylin & eosin (H&E) staining and real-time polymerase chain reaction (RT-PCR). In <i>in vivo</i> experiments, ossification was observed using micro-CT analysis and histological staining.
DOI: 10.6084/m9.figshare.4868297.v1
title: HGT in Proteobacteria-part II

description: HGT in human gut microbes: Horizontally transferred genes received by Proteobacteria species
DOI: 10.6084/m9.figshare.4868303.v1
title: Back-translating a rodent measure of negative bias into humans: the impact of induced anxiety and unmedicated mood and anxiety disorders

description: Negative affective biases are a core feature in the development and maintenance of anxiety disorders and, as such, are a key target for treatment development. However, recent years have seen a number of promising treatments fail to translate from animal models into clinical efficacy in humans. Better translational pipelines for treatment development are therefore needed. Directly adapting – i.e. back-translating –animal paradigms into humans is a promising, albeit less frequently adopted, approach. Here, we back-translate a rodent model of negative affective bias into humans, and explore the influence of a) pathological mood and anxiety disorders (study 1: N=30 symptomatic; N=47 controls) and b) transient induced anxiety (study 2: within-subject threat of shock; N = 47) on task performance. As in prior rodent work, an adapted drift diffusion model was also fitted to reaction time data to shed further light on decision-making processes.
DOI: 10.6084/m9.figshare.4868219
title: KMZ file of subaerial beach sand volume change due to the June 2016 east coast low storm in SE Australia

description: Google Earth KMZ file of subaerial beach sand volume change (above mean sea level) due to the east coast low that impacted the coastline of SE Australia in June 2016. Data is at 100 m alongshore resolution spanning 177 km of surveyed coastline between Sydney and Nambucca Heads (New South Wales). Topographic measurements used to calculate sand volume changes were collected using Airborne Lidar flown immediately prior to and following the storm event. Use Google Earth software to browse data. <br>Data analysed in <i>Scientific Reports</i> publication Harley <i>et al.</i> (2017) "Extreme coastal erosion enhanced by anomalous extratropical storm wave direction", doi:10.1038/s41598-017-05792-1
DOI: 10.6084/m9.figshare.4868213
title: Super Typhoon

description: Data set after the Super Typhoon. Can be used to verify our results. Any request to use the data for publication should be addressed to Prof. Ben-Ezra as this data is being used for publication. <br><br>Prof. Menachem Ben-Ezra<br>menbe@ariel.ac.il<br>
DOI: 10.6084/m9.figshare.4868204
title: Основные сериальные издания в помощь качественному выполнению исследований по атомной энергетике.xlsx

description: Основные сериальные издания в помощь качественному выполнению исследований по атомной энергетике
DOI: 10.6084/m9.figshare.4868195
title: A first-principles study of the formation of θ′′ phase in Al–Cu alloys

description: The θ′′-Al<sub>3</sub>Cu phase plays an important role in the precipitation process of Al–Cu alloys. This phase has a sandwich structure—every two {200}<sub>Cu</sub> layers are separated by three {200}<sub>Al</sub> layers. To analyse the formation mechanism of this structure, the elastic strain energy of the {200}<sub>Cu</sub> and {200}<sub>Al</sub> layers, and the chemical bonding energy that reflects the interaction between the electrons in Cu and neighbouring Al atoms are calculated and analysed by first-principles calculations, projected density of states and Bader analysis. Our computation results reveal that this sandwich structure is energetically preferred in the competition of elastic strain and chemical bonding energies. To minimise the elastic strain energy of {200}<sub>Al</sub> and {200}<sub>Cu</sub> layers, the {200}<sub>Cu</sub> layers prefer being apart from each other, whereas the chemical bonding energy favours the opposite arrangement because the intermetallic bond between Al and Cu atoms may form through <i>p</i>-<i>d</i> hybridization.
DOI: 10.6084/m9.figshare.4868213.v1
title: Super Typhoon

description: Data set after the Super Typhoon. Can be used to verify our results. Any request to use the data for publication should be addressed to Prof. Ben-Ezra as this data is being used for publication. <br><br>Prof. Menachem Ben-Ezra<br>menbe@ariel.ac.il<br>
DOI: 10.6084/m9.figshare.4868219.v2
title: KML file of subaerial beach sand volume change due to the June 2016 east coast low storm in SE Australia

description: Google Earth KMZ file of subaerial beach sand volume change (above mean sea level) due to the east coast low that impacted the coastline of SE Australia in June 2016. Data is at 100 m alongshore resolution spanning 177 km of surveyed coastline between Sydney and Nambucca Heads (New South Wales). Topographic measurements used to calculate sand volume changes were collected using Airborne Lidar flown immediately prior to and following the storm event. Use Google Earth software to browse data. <br>Refer to Scientific Reports publication Harley et al. (2017) "Extreme coastal erosion enhanced by anomalous extratropical storm wave direction", doi:10.1038/s41598-017-05792-1
DOI: 10.6084/m9.figshare.4868195.v1
title: A first-principles study of the formation of θ′′ phase in Al–Cu alloys

description: The θ′′-Al<sub>3</sub>Cu phase plays an important role in the precipitation process of Al–Cu alloys. This phase has a sandwich structure—every two {200}<sub>Cu</sub> layers are separated by three {200}<sub>Al</sub> layers. To analyse the formation mechanism of this structure, the elastic strain energy of the {200}<sub>Cu</sub> and {200}<sub>Al</sub> layers, and the chemical bonding energy that reflects the interaction between the electrons in Cu and neighbouring Al atoms are calculated and analysed by first-principles calculations, projected density of states and Bader analysis. Our computation results reveal that this sandwich structure is energetically preferred in the competition of elastic strain and chemical bonding energies. To minimise the elastic strain energy of {200}<sub>Al</sub> and {200}<sub>Cu</sub> layers, the {200}<sub>Cu</sub> layers prefer being apart from each other, whereas the chemical bonding energy favours the opposite arrangement because the intermetallic bond between Al and Cu atoms may form through <i>p</i>-<i>d</i> hybridization.
DOI: 10.6084/m9.figshare.4868204.v1
title: Основные сериальные издания в помощь качественному выполнению исследований по атомной энергетике.xlsx

description: Основные сериальные издания в помощь качественному выполнению исследований по атомной энергетике