cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ucf9km
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico",
 "Country is Guatemala",
 "Country is Belize",
 "Country is El Salvador",
 "Country is Honduras",
 "Country is Nicaragua",
 "Country is Costa Rica",
 "Country is Panama"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bromus rigidus Roth"
 ]
}

 The dataset includes 169 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026242-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9snshz
title: Occurrence Download

description: A dataset containing 4257 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iris ruthenica Ker Gawl."
 ]
}

 The dataset includes 4257 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058306-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnvr5r
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microula pustulosa (C.B.Clarke) Duthie",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 99 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0322883-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hakaqd
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phocoena dioptrica Lahille, 1912"
 ]
}

 The dataset includes 65 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045835-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnctth
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalea capitata S.Watson"
 ]
}

 The dataset includes 218 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038618-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4ffcn
title: Occurrence Download

description: A dataset containing 4591 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is WII Herbarium Dataset"
 ]
}

 The dataset includes 4591 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032642-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tbe9ne
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thermococcus Zillig, 1983"
 ]
}

 The dataset includes 56 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000314-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v3bwtz
title: Occurrence Download

description: A dataset containing 2923 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sicyos angulatus L."
 ]
}

 The dataset includes 2923 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045836-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g2eugn
title: Occurrence Download

description: A dataset containing 860 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora ligularis Juss."
 ]
}

 The dataset includes 860 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038620-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4xdima
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aspalathus ericifolia L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 289 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036409-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hox0e
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aquila chrysaetos (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Country is Mexico",
 "Year is 2014"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000315-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvyp6h
title: Occurrence Download

description: A dataset containing 54246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Fish Collection NRM"
 ]
}

 The dataset includes 54246 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077322-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0yaunf
title: Occurrence Download

description: A dataset containing 625531 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Misgurnus anguillicaudatus (Cantor, 1842)",
 "TaxonKey is Molineria capitulata (Lour.) Herb.",
 "TaxonKey is Momordica charantia L.",
 "TaxonKey is Momordica charantia Descourt.",
 "TaxonKey is Monstera deliciosa Liebm.",
 "TaxonKey is Morus alba Sudw.",
 "TaxonKey is Morus alba L.",
 "TaxonKey is Morus alba Bureau",
 "TaxonKey is Morus nigra Thunb., 1784",
 "TaxonKey is Morus nigra L.",
 "TaxonKey is Murraya paniculata (L.) Jack",
 "TaxonKey is Murraya paniculata Kaneh.",
 "TaxonKey is Murraya paniculata (L.) Jacq.",
 "TaxonKey is Murraya paniculata Hassk.",
 "TaxonKey is Mus musculus Linnaeus, 1758",
 "TaxonKey is Mus musculus domesticus Schwarz & Schwarz, 1943",
 "TaxonKey is Musa balbisiana Colla",
 "TaxonKey is Musa ornata Roxb.",
 "TaxonKey is Musa rosacea Jacq.",
 "TaxonKey is Mustela putorius Linnaeus, 1758",
 "TaxonKey is Mustela putorius rothschildi Pocock, 1932",
 "TaxonKey is Myiopsitta monachus (Boddaert, 1783)",
 "TaxonKey is Myocastor coypus (Molina, 1782)",
 "TaxonKey is Myocastor Kerr, 1792",
 "TaxonKey is Pitrufquenia coypus Marelli, 1932",
 "TaxonKey is Myoforceps aristatus (Dillwyn, 1817)",
 "TaxonKey is Mytilopsis leucophaeta (Conrad, 1831)",
 "TaxonKey is Nasua nasua (Linnaeus, 1766)",
 "TaxonKey is Nephrolepis cordifolia (L.) C.Presl",
 "TaxonKey is Nephrolepis cordifolia f. aurea-glandulosa Bonap.",
 "TaxonKey is Nicotiana glauca Graham",
 "TaxonKey is Nicotiana glauca f. lateritia Lillo",
 "TaxonKey is Nymphoides indica (L.) Griseb.",
 "TaxonKey is Nymphoides indica (L.) Kuntze",
 "TaxonKey is Odontesthes bonariensis (Valenciennes, 1835)",
 "TaxonKey is Oeceoclades maculata (Lindl.) Lindl.",
 "TaxonKey is Omobranchus punctatus (Valenciennes, 1836)",
 "TaxonKey is Oncorhynchus mykiss (Walbaum, 1792)",
 "TaxonKey is Ophiopogon japonicus (Thunb.) Ker Gawl.",
 "TaxonKey is Ophiopogon japonicus Wall.",
 "TaxonKey is Ophiothela mirabilis (Verrill, 1867)",
 "TaxonKey is Opsanus beta (Goode & Bean, 1880)",
 "TaxonKey is Opuntia ficus-indica (L.) Mill.",
 "TaxonKey is Opuntia ficus-indica f. reticulata Backeb.",
 "TaxonKey is Oreochromis macrochir (Boulenger, 1912)",
 "TaxonKey is Oreochromis macrochir mweruensis Trewavas, 1983",
 "TaxonKey is Oreochromis mossambicus (Peters, 1852)",
 "TaxonKey is Oreochromis niloticus (Linnaeus, 1758)",
 "TaxonKey is Oreochromis niloticus eduardianus (Boulenger, 1912)",
 "TaxonKey is Oreochromis spilurus (Günther, 1894)"
 ]
}

 The dataset includes 625531 records from 1651 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005440-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25846003.v4
title: IPHs

description: <b>haplotypes resolved genomes for phased potato pangenome graph</b>
DOI: 10.25402/fvl.14974071.v1
title: Targeting SARS-CoV-2 Nsp15 endoribonuclease: An in silico perspective: Supplementary Data.docx

description: <b>Supplementary Table 1</b><br><br>Binding
 affinity of the drug molecules against SARS-CoV-2 Nsp15.
 
 <b>Supplementary Figure 1</b>. 
 
 The
 redocking of the citrate into Nsp15 (PDB ID: 6W01 chain A). the citrate
 moieties are colored according to the color code at the bottom of the figure.
DOI: 10.25402/fvl.16999423.v1
title: Supplementary Table 1a.xlsx: Temporal Variations of Country specific mutational profile of SARS-CoV-2: Effect on Vaccine Efficacy

description: <b>Supplementary Table 1a</b>: All frequently
 mutated amino acid residues that have encountered substitutions in 2% or more
 of all SARS-CoV-2 isolates, in at least one country, before May (Group B).
 The frequencies above 2% have been highlighted in ‘red’
DOI: 10.25402/fvl.16999444.v1
title: Supplementary Table 8.xlsx: Temporal Variations of Country specific mutational profile of SARS-CoV-2: Effect on Vaccine Efficacy

description: <b>Supplementary Table 8</b>: The list of computationally predicted S
 protein epitopes, which overlapped with one or more frequently mutated
 residues. The mutations with corresponding countries where they were
 identified are listed. Highly mutated residues are highlighted.
DOI: 10.25402/fvl.16999501.v1
title: Supplementary Table 4.xlsx: Temporal Variations of Country specific mutational profile of SARS-CoV-2: Effect on Vaccine Efficacy

description: <b>Supplementary Table 4</b>: The dominating
 SARS-CoV-2 variants, with at least 10% abundance in respective countries,
 considering the highly mutable amino acid sites. For each strain, the
 positions with substitutions have occurred are filled, while the blank cells
 denote wild-type residues.
DOI: 10.25402/fvl.19096973.v1
title: Supplementary_materials: Efficacy of lopinavir-ritonavir combination therapy for the treatment of hospitalized COVID-19 patients: A meta-analysis

description: <b>Table
 S1 </b>PRISMA checklist
 
 <b>Table
 S2 </b>MEDLINE search strategy
 
 <b>Table
 S3 </b>EMBASE search strategy
 <b> </b>
 <b>Table
 S4 </b>PubMed search strategy
 
 <b>Table
 S5 </b>CNKI search strategy
 
 <b>Table
 S6 </b>Wanfang search strategy
 
 <b>Table
 S7 </b>Wanfang Med Online search strategy
 
 <b>Table
 S8 </b>SinoMed search strategy
 
 <b>Table
 S9 </b>CQVIP search strategy<br><b>Figure</b> <b>1–38</b>
 
 


<br>
DOI: 10.25402/fvl.19152959.v1
title: Supplementary Tables: Antineutrophil cytoplasmic antibody positivity and clinical implications in COVID-19

description: <b>Supplementary Table 1. </b>ANCA
 status and reasons for ANCA testing in patients.
 <b> </b>
 <b>Supplementary
 Table 2.</b> Comparison of factors that can be
 associated with mortality between ANCA negative and ANCA positive patients
 with mortality.
 
 <b>Supplementary
 Table 3.</b> Distribution of treatment agents used
 for COVID-19 in patients.
DOI: 10.25402/fvl.19982192
title: Efficacy and safety of corticosteroid regimens for the treatment of hospitalized COVID-19 patients: a meta-analysis: Supplementary data

description: Aim: To evaluate the efficacy and safety of corticosteroids for treating hospitalized COVID-19 patients.
Materials & methods: Efficacy outcomes included time to negative SARS-CoV-2 tests, length of
stay, duration and incidence of intensive unit care stay, incidence of mortality and duration and
incidence of mechanical ventilation. Safety outcomes included the incidence of adverse events and
severe adverse events, incidence of hyperglycemia and incidence of nosocomial infections. Results:
Ninety-five randomized controlled trials (RCTs) and observational studies (n = 42,205) were included.
Corticosteroids were associated with increased length of stay (based on RCT only), increased time
to negative tests, decreased length of mechanical ventilation and increased odds of hyperglycemia.
Conclusion: Corticosteroids should be considered in patients requiring mechanical ventilation, and
glycemic monitoring may be needed when administering corticosteroids.
DOI: 10.25402/fvl.19982192.v1
title: Efficacy and safety of corticosteroid regimens for the treatment of hospitalized COVID-19 patients: a meta-analysis: Supplementary data

description: Aim: To evaluate the efficacy and safety of corticosteroids for treating hospitalized COVID-19 patients.
Materials & methods: Efficacy outcomes included time to negative SARS-CoV-2 tests, length of
stay, duration and incidence of intensive unit care stay, incidence of mortality and duration and
incidence of mechanical ventilation. Safety outcomes included the incidence of adverse events and
severe adverse events, incidence of hyperglycemia and incidence of nosocomial infections. Results:
Ninety-five randomized controlled trials (RCTs) and observational studies (n = 42,205) were included.
Corticosteroids were associated with increased length of stay (based on RCT only), increased time
to negative tests, decreased length of mechanical ventilation and increased odds of hyperglycemia.
Conclusion: Corticosteroids should be considered in patients requiring mechanical ventilation, and
glycemic monitoring may be needed when administering corticosteroids.
DOI: 10.25402/fvl.20342667.v1
title: Prevalence of occult hepatitis B infection in liver biopsy sample of patients with nonviral liver disease: Supplementary Figure and Table

description: Aim: To determine the prevalence of occult hepatitis B (HBV) infection (OBI) in patients with nonviral
liver disease. Materials & methods: This study included 83 HBsAg-negative patients followed up at a
gastroenterohepatology clinic. The presence of HBV DNA was investigated by using an in-house nested-
PCR method applied to liver parenchymal biopsy samples obtained from patients who underwent due
nonviral chronic liver disease. Results: OBI was detected in 19 (22.9%) of the 83 cases, in 11 (44%) of 25
anti-HBc-positive patients, and 15 (31.9%) of 47 anti-HBc and/or anti-HBs antibodies-positive patients.
Conclusion: There is a considerable prevalence of OBI among patients with nonviral chronic liver disease.
Therefore, it is suggested that closely monitoring HBV can be useful to prevent or more effectively manage
possible OBI-related complications among patients with nonviral chronic liver disease, especially those
who are HBsAg seronegative or anti-HBV antibody seropositive.
DOI: 10.5281/zenodo.11204181
title: Dataset related to the manuscript Wagner and Schepanski (submitted to JAMES, 2024): "Quantifying fire-driven dust emissions using a global aerosol model"

description: This dataset belongs to the manuscript of Wagner and Schepanski (2024) entitled "Quantifying fire-driven dust emissions using a global aerosol model" submitted to the "Journal of Advances in Modeling Earth Systems (JAMES)".

It contains the for the 10 year simulation period 2004-2013 the monthly, seasonal, or yearly averaged fields of the variables (variable name in brackets) that were used to prepare the plots and statements made in the manuscript. These are in detail:



GFAS input data of FRP (frp)

simulated AOD (tau_2d_550nm) and dust AOD (tau_comp_du_550nm)

simulated wind-driven (emi_du_dust) and fire-driven (emi_du_fdust) dust emission fluxes

simulated atmospheric dust concentration (du_all) including the soluble/insoluble coarse (du_ci, du_cs) and accumulation (du_ai, du_as) mode together with vertical atmospheric pressure levels (pfull)


The simulated results are provided for both simulations, the control run without the additional fire-dust emissions and the actual firedust simulation with the new fire-dust emission parameterization.
DOI: 10.25402/fvl.22219924.v1
title: Torque teno virus and cancers: current knowledge: Supplementary table

description: Aim: The aim of this systematic review is to assess the current knowledge about the relationship between
Torque teno virus (TTV) and cancer in different settings. Methods: A systematic search was conducted
in Medline via PubMed, Embase and Cochrane Library from the inception to the end of January 2023.
Results: 34 articles were included in the qualitative synthesis of this review and 2145 patients with solid
tumors have been analyzed. The most prevalent cancer types were hepatocellular carcinoma (HCC) and
lung cancer. Conclusion: TTV has proven its role as a marker of functional immune competence in the
setting of hematopoietic stem cell transplantation (HSCT), but in the oncological field is yet to be defined.
DOI: 10.25402/fvl.22645180
title: Lineages and sublineages of human papillomavirus type 16 in cervical samples of Iranian women: supplementary data

description: Aim: This study was designed to analyze intratypic variations of human papillomavirus type 16 (HPV16)
and to assess the risk of these variants for progression to cervical cancer. Materials & Methods: HPV16
variants of 58 women were determined by PCR-directed sequencing. Results: The most frequent lineage
was D (67.2%) followed by A (32.8%). Lineage A was found predominantly in normal (62.5%) and cervical
intraepithelial neoplasia-1 (CIN-1) (83.3%), while lineage D was the most prevalent variant in cervical
cancer (100%). Conclusion: The present study revealed a distinct pattern of HPV16 variants in Iran. Based
on our data, the predominant HPV16 lineage was D and there was a significant association between
lineage D variants and cervical cancer.
DOI: 10.25402/fvl.23060252.v1
title: In silico assessment of diterpenes as potential inhibitors of SARS-COV-2 main protease: supplementray materials

description: Aim: We aimed to investigate the potential inhibitory effects of diterpenes on SARS-CoV-2 main
protease (Mpro). Materials & methods: We performed a virtual screening of diterpenoids against Mpro
using molecular docking, molecular dynamics simulation and absorption, distribution, metabolism and
excretion) analysis. Results: Some tested compounds followed Lipinski’s rule and showed drug-like
properties. Some diterpenoids possessed remarkable binding affinities with SARS-CoV-2 Mpro and
drug-like pharmacokinetic properties. Three derivatives exhibited structural deviations lower than 1 A˚ .
Conclusion: The findings of the study suggest that some of the diterpenes could be candidates as potential
inhibitors for Mpro of SARS-CoV-2.
DOI: 10.5281/zenodo.8060357
title: An evaluation of cloud-precipitation structures in mixed-phase stratocumuli over the southern ocean in kilometer-scale ICON simulations during CAPRICORN

description: The repository contains ICON simulated outputs (Cntrl_ICON.nc.gz, No_Gr_ICON.nc.gz, No_Ice_ICON.nc.gz, 100m_Vert_ICON.nc.gz, and 50m_Vert_ICON.nc.gz) and two km mean and ensemble forward simulated results (Cntrl_PAMTRA.gz, No_Gr_PAMTRA.gz, No_Ice_PAMTRA.gz, 100m_Vert_PAMTRA.gz, and 50m_Vert_PAMTRA.gz) for the two day period (00:00 UTC on March 26, 2016 to 00:00 UTC on March 28, 2016). The prefix in the filenames corresponds to the experiments described in the manuscript.
DOI: 10.5281/zenodo.8060358
title: An evaluation of kilometer-scale ICON simulations of mixed-phase stratocumuli over the Southern Ocean during CAPRICORN

description: The repository contains ICON simulated outputs (Cntrl_ICON.nc.gz, No_Gr_ICON.nc.gz, No_Ice_ICON.nc.gz, 100m_Vert_ICON.nc.gz, and 50m_Vert_ICON.nc.gz) and forward simulated results (Cntrl.nc.gz, No_Gr.nc.gz, No_Ice.nc.gz, 100m_Vert.nc.gz, and 50m_Vert.nc.gz) gzipped in netcdf formats along the ensemble ship tracks for the two day period (00:00 UTC on March 26, 2016 to 00:00 UTC on March 28, 2016). The prefix in the filenames corresponds to the experiments described in the manuscript.
DOI: 10.15468/dl.r357hp
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Orcinus Fitzinger, 1860"
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021377-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11208032
title: Data: The effects of glucose addition and water table manipulation on peat quality of drained peatland forests with different management practices

description: The file contain data on peat chemical quality and peat decomposition. We studied how glucose addition, water table and forest harvesting affect the chemical composition of peat and decomposition rate (carbon dioxide fluxes) and soil water quality. Experiments and results are presented in:

Aaltonen H., Zhu X., Khatun R., Laurén A., Palviainen M., Könönen M., Peltomaa E., Berninger F., Köster K., Ojala A., Pumpanen J. 2022. The effects of glucose addition and water table manipulation on peat quality of drained peatland forests with different management practices. Soil Science Society of America Journal 86:1625–1638. https://doi.org/10.1002/saj2.20419
DOI: 10.5281/zenodo.11208033
title: Data: The effects of glucose addition and water table manipulation on peat quality of drained peatland forests with different management practices

description: The file contain data on peat chemical quality and peat decomposition. We studied how glucose addition, water table and forest harvesting affect the chemical composition of peat and decomposition rate (carbon dioxide fluxes) and soil water quality. Experiments and results are presented in:

Aaltonen H., Zhu X., Khatun R., Laurén A., Palviainen M., Könönen M., Peltomaa E., Berninger F., Köster K., Ojala A., Pumpanen J. 2022. The effects of glucose addition and water table manipulation on peat quality of drained peatland forests with different management practices. Soil Science Society of America Journal 86:1625–1638. https://doi.org/10.1002/saj2.20419
DOI: 10.15131/shef.data.25348111.v2
title: Data for Taking Shape: A New Geometric Morphometric Approach to Quantifying Dental Fluctuating Asymmetry and its Application to the Evaluation of Developmental Stress

description: This dataset contains the derived quantities presented in "Taking Shape: A New Geometric Morphometric Approach to Quantifying Dental Fluctuating Asymmetry and its Application to the Evaluation of Developmental Stress". This paper details the methodology developed during first author's doctoral studentship under the supervision of Prof. Lizzy Craig-Atkins and Dr Eleanor Stillman. The manuscript has been published in the journal Archaeometry. The data presented were obtained through original research during the doctoral project.