cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28920173.v1
title: Olfactory responses of the variegated fruit fly, Phortica variegata, an emerging vector of the zoonotic eyeworm Thelazia callipaeda, to ecologically relevant volatiles

description: We used gas chromatography coupled electroantennography to measure antennal responses to synthetic and natural volatile blends. A comparative analysis was performed on the antennal responses of both sexes of <i>P. variegata</i> and its well-studied relative, <i>Drosophila</i> <i>melanogaster</i>.  Components of the synthetic blends were selected based on the odorant receptor repertoire of <i>D. melanogaster </i>and established mosquito attractants, with the rationale that conserved olfactory receptors among dipterans may allow <i>P. variegata</i> to detect similar compounds. Volatile extracts collected using active carbon adsorbent traps were also tested on the antennae and analysed using gas chromatography coupled mass spectrometry.<b> </b><br>
DOI: 10.6084/m9.figshare.14776368.v1
title: OnClass_data_public_scRNA_data.tar.gz.0

description: Dataset for OnClass
DOI: 10.6084/m9.figshare.25897741.v1
title: Fig 4 - Dye + Antibody Dual Stain

description: PDF data summaries (generated using the NanoFCM NanoAnalyzer) supporting the manuscript "Shining a Light on Fluorescent EV Dyes: Evaluating Efficacy, Specificity, and Suitability by Nano-Flow Cytometry" by Brealey, et al.Raw data are available upon request.
DOI: 10.6084/m9.figshare.21707516.v4
title: SSRs primer for D testudinarius.xlsx

description: These data are containing SSR markers filtered from Durio testudinarius whole genome sequencing assembly.
DOI: 10.6084/m9.figshare.24126306.v1
title: DATA FOR MANUSCRIPT "THE ASSOCIATION BETWEEN LIFESTYLE FACTORS WITH HYPERTENSIONCONTROL in INDONESIAN PRIMARY HEALTH CARE: A CROSS SECTIONAL STUDYTHE ASSOCIATION BETWEEN LIFESTYLE FACTORS WITH HYPERTENSION CONTROL in INDONESIAN PRIMARY HEALTH CARE: A CROSS SECTIONAL STUDY

description: DATA FOR MANUSCRIPT "THE ASSOCIATION BETWEEN LIFESTYLE FACTORS WITH HYPERTENSION CONTROL in INDONESIAN PRIMARY HEALTH CARE: A CROSS SECTIONAL STUDYTHE ASSOCIATION BETWEEN LIFESTYLE FACTORS WITH HYPERTENSION CONTROL in INDONESIAN PRIMARY HEALTH CARE: A CROSS SECTIONAL STUDY"
DOI: 10.6084/m9.figshare.25980397.v1
title: SOCIAL MEDIA E-PARTICIPATION 2.csv

description: Social media e-participation preference data from the Nigerian local government. the data as extracted from an online Google data form.
DOI: 10.6084/m9.figshare.9611198.v1
title: kneepaingwas

description: GWAS summary statistics on knee pain from UK Biobank
DOI: 10.6084/m9.figshare.28881140.v2
title: <b>Remote Sensing for Solid Waste mapping (RS4SW)</b>

description: The urbanization worldwide leads to the rapid increase of solid waste, posing a threat to environment and people’s wellbeing. However, it is challenging to detect solid waste sites with high accuracy due to complex landscape, and very few studies considered solid waste mapping across multi-cities and in large areas. To tackle this issue, this study proposes a novel deep learning model for solid waste mapping from very high resolution remote sensing imagery. By integrating a multi-scale dilated convolutional neural network (CNN) and a Swin-Transformer, both local and global features are aggregated. Experiments in China, India and Mexico indicate that the proposed model achieves high performance with an average accuracy of 90.62%. The novelty lies in the fusion of CNN and Transformer for solid waste mapping in multi-cities without the need for pixel-wise labelled data. Future work would consider more sophisticated methods such as semantic segmentation for fine-grained solid waste classification.<br><br>Our publication is available at https://doi.org/10.1080/10106049.2022.2164361 and our code is available at https://github.com/MrSuperNiu/Remote-Sensing-for-Solid-Waste-mapping.
DOI: 10.6084/m9.figshare.1531952.v1
title: Seed Plants Authors

description: This list of authors is supplementary material of the article "Growing knowledge: an overview of Seed Plant diversity in Brazil" published in the Journal Rodriguésia in 2015 (DOI: 10.1590/2175-7860201566411).
DOI: 10.6084/m9.figshare.4331345.v2
title: Gut_MSQ_dataset_final.sav

description: Data regarding the use of a dietary intervention designed to manipulate gut bacteria, <i>The Gut Makeover</i>. This dietary protocol has been published in the UK and is due to be published in the US in 2017. This is the first research study, to our knowledge, to assess the program in terms of any benefits it may have to general health. Physical and emotional well-being were assessed pre- and post-intervention using the Medical Symptoms Questionnaire; we report rapid, extensive, high-magnitude reductions in medical symptoms over this four-week time period. Before and after measurements are available for 21 participants on the following sub-scales: Total medical symptom score, head symptoms, eye symptoms, nose symptoms, skin symptoms, heart symptoms, digestive symptoms, joint and muscle symptoms, weight symptoms, energy symptoms, mind symptoms and emotion symptoms.
DOI: 10.6084/m9.figshare.8980547.v2
title: Google Earth Engine code

description: Google Earth Engine used to compute the NDVI statistics added to Globe-LFMC. The input of the program is a point shapefile (“samplePlotsShapefile”, extensions .cpg, .dbf, .prj, .shp, .shx) representing the location of each Globe-LFMC site. This shapefile is available as additional data in figshare (see Code Availability). To run this GEE code the shapefile needs to be uploaded into the GEE Assets and, then, imported into the Code Editor with the name “plots” (without quotation marks).Google Earth Engine code<br><b>Change Notice - GEE_script_for_GlobeLFMC_ndvi_stats_v2.js</b>The following acknowledgements have been added at the beginning of the code: “Portions of the following code are modifications based on work created and shared by Google in Earth Engine Data Catalog and Earth Engine Guides under the Apache 2.0 License. https://www.apache.org/licenses/LICENSE-2.0”<br><br><br><b>Change Notice - samplePlotsShapefile_v2</b><br>The shapefile describing the database sites has been corrected and updated with the correct coordinates.<br>
DOI: 10.6084/m9.figshare.1054736.v5
title: Arctic 2k v1.1.1

description: These data are well described in the Nature Scientific Data data descriptor: "An extended Arctic proxy temperature database for the past 2,000 years". ***Version 1.1.1 update**** In addition to the revised datasets, three tables are also included 1) MetadataTablev1.1.1.xlsx Which lists the site information and metadata for each site as in table 1 of the Scientific Data articles 2) Revisions_v1.1.1.xlsx Which lists and describes the changes between versions 3) Reconstruction_Arc2kv1.1.1.xlsx Which includes the data for the annual, 30-year and 100-year mean Arctic temperature reconstruction based on the v1.1.1 data. Lastly, the text files were updated to reflect the publication date and DOI of the Scientific Data publication, and the former convention of inverting values in the records with negative temperature was changed to the much more natural approach of showing the original data and relying on the metadata to identify records with inverse temperature relations.
DOI: 10.6084/m9.figshare.19531154.v1
title: Pathogenicity and virulence of Marburg virus

description: Marburg virus (MARV) has been a major concern since 1967, with two major outbreaks occurring in 1998 and 2004. Infection from MARV results in severe hemorrhagic fever, causing organ dysfunction and death. Exposure to fruit bats in caves and mines, and human-to-human transmission had major roles in the amplification of MARV outbreaks in African countries. The high fatality rate of up to 90% demands the broad study of MARV diseases (MVD) that correspond with MARV infection. Since large outbreaks are rare for MARV, clinical investigations are often inadequate for providing the substantial data necessary to determine the treatment of MARV disease. Therefore, an overall review may contribute to minimizing the limitations associated with future medical research and improve the clinical management of MVD. In this review, we sought to analyze and amalgamate significant information regarding MARV disease epidemics, pathophysiology, and management approaches to provide a better understanding of this deadly virus and the associated infection.
DOI: 10.15468/dl.yhxgmg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-0.0352 19.8496,-9.0352 19.8496,-9.0352 10.8496,-0.0352 10.8496,-0.0352 19.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013489-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.21545223.v3
title: Tabla comparativa sobre "Elecciones en América Latina Durante la Pandemia de COVID-19 (2020-2021)"

description: El Observatorio de Reformas Políticas en América Latina presenta la siguiente tabla comparativa sobre las elecciones en América Latina durante la pandemia de COVID-19 (2020-2021). <br> Producto elaborado en el marco del Programa de Apoyo a Proyectos de Investigación e Innovación Tecnológica (PAPIIT) de la UNAM. Clave del proyecto: IN302122. Proyecto: “La capacidad de resiliencias de las democracias: elecciones y política en contexto de pandemia”, del Instituto de Investigaciones Jurídicas de la UNAM [Dir. Flavia Freidenberg].
DOI: 10.6084/m9.figshare.26067700.v1
title: Supplementary Material for: lipoteichoic acids are essential for pneumococcal colonization and membrane integrity

description: Introduction: The hydrophilic, polymeric chain of the lipoteichoic acid (LTA) of the Gram-positive pathobiont Streptococcus pneumoniae is covalently linked to the glycosylglycerolipid -D-glucopyranosyl-(1,3)-diacylglycerol by the lipoteichoic acid ligase TacL, leading to its fixation in the cytoplasmic membrane. Pneumococcal LTA, sharing identical repeating units with the wall teichoic acids, are dispensable for normal growth but required for full-virulence in invasive infections. 
Methods: Mutants deficient in TacL and complemented strains constructed were tested for their growth, resistance against oxidative stress and susceptibility against antimicrobial peptides. Further, the membrane fluidity of pneumococci, their capability to adhere to lung epithelial cells and virulence in a Galleria mellonella as well as intranasal mouse infection model were assessed.
Results: In the present study, we indicate that LTA is already indispensable for pneumococcal adherence to human nasopharyngeal cells and colonization in an intranasal mouse infection model. Mutants deficient for TacL did not show morphological defects. However, our analysis of pneumococcal membranes in different serotypes showed an altered membrane fluidity and surface protein abundance of lipoproteins in mutants deficient for LTA but not WTA. These mutants had a decreased membrane fluidity, exhibited higher amounts of lipoproteins, and showed an increased susceptibility to antimicrobial peptides. In complemented mutant strains this defect was fully restored. 
Conclusion: Taken together, LTA is crucial for colonization and required to effectively protect pneumococci from innate immune defence mechanisms by maintaining the membrane integrity.
DOI: 10.6084/m9.figshare.16641004.v1
title: liverwort-transcriptome-920

description: liverwort-transcriptome-920
DOI: 10.6084/m9.figshare.12726932.v1
title: Genome assembly and annotation files of Medicago ruthenica

description: Genome assembly, annotation, CDS, and gene information files of <i>Medicago ruthenica</i>
DOI: 10.6084/m9.figshare.21632138.v1
title: lumbar LMC

description: scRNA-seq data and cell subclustering of lumbar LMC
DOI: 10.15131/shef.data.11876736.v1
title: Hadfield Green Roof 5-year Dataset

description: Data collected as part of the EU funded 'Collaborative research and development of green roof system technology' project from the Sheffield, UK, green roof testbeds. Data includes 5 years of: - Rainfall data (1-minute resolution) - Green roof runoff data for 9 roof configurations (1-minute resolution) - Soil moisture content at 3 depths for 4 roof configurations (5-minute resolution) - Climate data sufficient to calculate FAO-56 Penman-Monteith (1-hour resolution) Due to difficulties in monitoring testbed runoff, there are occasions where runoff data is considered invalid. A separate data-file indicates individual storm events where runoff data is considered to be valid. The data has been used to produce the following publications: - C Berretta, S Poë, V Stovin, 2014. 'Moisture content behaviour in extensive green roofs during dry periods: The influence of vegetation and substrate characteristics.' Journal of Hydrology 511, 374-386. - V Stovin, S Poë, S De-Ville, and C Berretta, 2015. ‘The influence of substrate and vegetation configuration on green roof hydrological performance.’ Ecological Engineering, Vol. 85, 159-172. - S De-Ville, M Menon, V Stovin, 2018. ‘Temporal variations in the potential hydrological performance of extensive green roof systems.’ Journal of Hydrology 558, 564-578.
DOI: 10.6084/m9.figshare.29181287.v1
title: 250529_Data

description: Corneal epithelium in keratoconus
DOI: 10.6084/m9.figshare.5446570.v1
title: AD5 INHIBITION

description: adenovirus mus:ot inhibition
DOI: 10.6084/m9.figshare.24884211.v1
title: <b>Climate Change Modulates the Impact of Nitrogen and Enhances Phosphorus-Driven Top-Down Control by Zooplankton on Harmful Algae</b>

description: In this dataset, we upload raw data to analyze planktonic predator-prey dynamics under climate change and nutrient fluctuations. Among them are time series data of Microcystis in the control group, Microcystis in the grazing treatment, and Paramecium in the grazing treatment under different nutrient levels and climate conditions.
DOI: 10.6084/m9.figshare.13681393.v1
title: Illegal parrot trade in Indonesia

description: Dataset to the publication "<i>What drives the illegal parrot trade? Applying a criminological model to market and seizure data in Indonesia</i>" including:<br>- CRAAVED_Indonesia_parrots.csv (Parrot trade dataset in Indonesia.)- Indonesian_parrots_Ericson1000.nex (1000 phylogeny trees of all parrot species of Indonesia.)<br>For details on the database, see the publication and its supplementary materials.
DOI: 10.25400/lincolnuninz.21300522.v1
title: The estimation of in-ground storage capacity

description: Maximum in-ground storage capacity within the SWM zone is estimated from the measurement of potential GSI area and maximum in-ground storage depth associated with the high groundwater level.
DOI: 10.6084/m9.figshare.24448516.v1
title: canola_detection_dataset.zip

description: RGB images were obtained from three distinct datasets featuring canola in its early growth stage intermingled with weeds, including <b>T1 Miling</b> (T1_miling), <b>T2 Miling</b> (T2_Miling), and <b>York canola</b> (YC). These datasets were collected in Western Australia from distances ranging between 0.5 meters and 1.5 meters, captured at various angles. The images are processed as 500 by 500 pixel frames, comprising the core images along with their corresponding segmentation masks. Manual delineation of bounding boxes using the polygon tool was performed using the Make Sense annotation tool by Skalski, P. [GitHub: https://github.com/SkalskiP/make-sense/].For T1 and T2 Millet datasets, the images showcase canola plants in conjunction with rye grass, whereas the York canola dataset features images of canola alongside regrowth of blue lupin. Image collection involved the use of a smartphone for T1 and T2 and a Canon 600D DSLR camera for YC. If you are interested in the scripts for image processing and deep learning, they can be accessed at [GitHub: https://github.com/mikemcka/Canola_detection_dl/tree/main].In this repository you will find the RGB images and weed-crop-soil segmentation masks obtained using CIVE vegetation index.
DOI: 10.6084/m9.figshare.27691290.v4
title: A large fraction of soil microbial taxa is sensitive to experimental warming

description: Fighsare for GCB manuscript
DOI: 10.6084/m9.figshare.29118284.v1
title: Clinical Value of Pelvic Floor Ultrasound and Glazer Pelvic Floor Electromyography in Predicting Postpartum Stress Urinary Incontinence

description: Abstract：Objective:Based on pelvic floor ultrasound and Glazer pelvic floor surface electromyography parameters in postpartum patients with stress urinary incontinence (SUI), to establish a model and explore its clinical value in predicting the disease.Methods:A total of 193 postpartum women admitted to our hospital were enrolled and divided into the SUI group (67 cases) and non-SUI group (126 cases) according to the occurrence of SUI at 6-8 weeks postpartum．Clinical data, three-dimensional pelvic floor ultrasound parameters，and Glazer pelvic floor sEMG parameters were collected from both groups．Univariate and multivariate analyses were performed to screen independent factors，based on which a nomogram model was established. Receiver operating characteristic (ROC) curves and clinical decision curves were plotted．Results：Significant differences were observed between the two groups in neonatal body weight，maternal weight at follow-up, bladder neck mobility (BNM)，urethral rotation angle(URA), posterior vesicourethral angle(PVA)，levator hiatus area(LHA) ，pelvic floor fast contraction force，tonic contraction force，and endurance (all P&lt;0.05)．Multivariate analysis identified URA，PVA，pelvic floor fast contraction force，tonic contraction force，and endurance as independent risk factors for SUI．The ROC curve showed an area under the curve (AUC) of 0.838．The decision curve indicated that the net benefit curve was higher than both the "All" line and the "None" line．Conclusion：The established model demonstrates high predictive value for postpartum SUI．The combination of pelvic floor ultrasound and Glazer pelvic floor electromyography can improve the diagnostic accuracy of SUI．
DOI: 10.6084/m9.figshare.14221703.v1
title: Supplementary Material for: Homogeneously Staining Regions (HSR) in Chromosome 1 of the House Mouse: Synapsis and Recombination at Meiosis

description: Amplified sequences constitute a large part of mammalian genomes. A chromosome 1 containing 2 large (up to 50 Mb) homogeneously staining regions (HSRs) separated by a small inverted euchromatic region is present in many natural populations of the house mouse (<i>Mus musculus musculus</i>). The HSRs are composed of a long-range repeat cluster, <i>Sp100-rs</i>, with a repeat length of 100 kb. In order to understand the organization and function of HSRs in meiotic chromosomes, we examined synapsis and recombination in male mice hetero- and homozygous for the HSR-carrying chromosome using FISH with an HSR-specific DNA probe and immunolocalization of the key meiotic proteins. In all homozygous and heterozygous pachytene nuclei, we observed fully synapsed linear homomorphic bivalents 1 marked by the HSR FISH probe. The synaptic adjustment in the heterozygotes was bilateral: the HSR-carrying homolog was shortened and the wild-type homolog was elongated. The adjustment was reversible: desynapsis at diplotene was accompanied by elongation of the HSRs. Immunolocalization of H3K9me2/3 indicated that the HSRs in the meiotic chromosome retained the epigenetic modification typical for C-heterochromatin in somatic cells. MLH1 foci, marking mature recombination nodules, were detected in the proximal HSR band in heterozygotes and in both HSR bands of homozygotes. Unequal crossing over within the long-range repeat cluster can cause variation in size of the HSRs, which has been detected in the natural populations of the house mouse.
DOI: 10.6084/m9.figshare.27257673.v3
title: <b>YG-CLOUD dataset </b>(the cloud removal dataset of the Yunnan-Guizhou Plateau)

description: This dataset describes the cloud removal dataset of the Yunnan-Guizhou Plateau in China. The dataset currently contains 19 subfolders, with numbers 1 to 18 used to distinguish specific data collection areas. Each subfolder includes pairs of TIFF images (consisting of cloud-covered and cloud-free images) and corresponding subfolders for cropped images. The folder named "ALL" contains all the image data, of which "CLOUD" and "CLEAR" each contain 4792 images. The "train" and "test" folders are split 8:2, respectively, for training and testing purposes.
DOI: 10.6084/m9.figshare.12820754.v1
title: Illumina based de novo genome assemblies of Neurospora sitophila

description: This dataset contains 55 de novo genome assemblies of Neurospora sitophila, 2 of N. perkinsii, 1 of N. crassa and 1 of N. hispaniola. The genomes were assembled using ABySS.<br>For more information, such as species ID and assembly statistics, see Svedberg et al., (2020): https://www.biorxiv.org/content/10.1101/2020.01.29.923946v1<br>Strain list:1765, 2234, 2235, 2370, 2492, 2493, 2684, 3215, 3216, 4732, 4736, 4737, 4738, 4739, 4741, 4746, 4752, 4753, 4785, 4794, 5933, 5935, 5940, 5941, 6213, 6220, 6223, 6227, 6232, 6235, 6284, 6646, 6673, 6689, 6850, 6863, 6886, 7844, 8173, 8770, 10393, 10404, 10408, W1249, W1294, W1297, W1306, W1312, W1321, W1325, W1330, W1413, W1417, W1426, W1432, W1434, W1446, 10403.<br>
DOI: 10.6084/m9.figshare.7185785.v1
title: Factors associated with depression in patients with Parkinson’s disease A multicenter study in Lima, Peru

description: Abstract The diagnosis and treatment of depression in patients with Parkinson’s disease (PD) is inadequate, often contributing to a reduced quality of life, rapid disease progression, higher cognitive impairment, and an increased burden of care for family members of patients with PD. Objective: To determine the factors associated with depression in PD and to examine the frequency of depressive symptoms among patients with PD. Methods: This study was an observational, analytical, multicenter study of a cross-sectional cohort, conducted between July 2016 and May 2017. PD patients were recruited from neurology clinics in Lima, Peru. All statistical analyses were performed using descriptive statistics. Bivariate and multivariate logistic regression analyses were calculated using STATA. Results: Out of 124 patients (average age: 68.7 years; 58% males) included in the study 60.5% (75/124) presented with symptoms of depression; only 20% (25/124) received antidepressants. Factors associated with depression in PD included: unemployment, falls, freezing of gait, involuntary movements micrographia, stooped posture, hyposmia, movement disorders in sleep, rapid disease progression, and the use of MAOIs. Furthermore, statistically significant differences were found in disease duration, UPDRS and MMSE scores, Hoehn and Yahr (HY) stage, and length of time taking L-dopa between PD patients with and without depressive symptoms. Conclusion: Factors associated with depressive symptoms in patients with PD were hyposmia, rapid progression of the disease, the use of L-dopa, and use of MAOIs. The frequency of depressive symptoms in patients with PD is high; early diagnosis and prompt treatment are needed to improve their quality of life and the family environment.