cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16767589.v1
title: Additional file 3 of The mitochondrial genome and Epigenome of the Golden lion Tamarin from fecal DNA using Nanopore adaptive sequencing

description: Additional file 3: Table S7. 5′ methylcytosine CpG calls from Nanopolish.
DOI: 10.6084/m9.figshare.16767589
title: Additional file 3 of The mitochondrial genome and Epigenome of the Golden lion Tamarin from fecal DNA using Nanopore adaptive sequencing

description: Additional file 3: Table S7. 5′ methylcytosine CpG calls from Nanopolish.
DOI: 10.6084/m9.figshare.16767605
title: Additional file 1 of Clinicopathologic significance and prognostic value of circRNAs in osteosarcoma: a systematic review and meta-analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.16767605.v1
title: Additional file 1 of Clinicopathologic significance and prognostic value of circRNAs in osteosarcoma: a systematic review and meta-analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.16767607.v1
title: Additional file 1 of Global properties of regulatory sequences are predicted by transcription factor recognition mechanisms

description: Additional file 1 : Table S1. Multimeric motif PFMs.
DOI: 10.6084/m9.figshare.16767607
title: Additional file 1 of Global properties of regulatory sequences are predicted by transcription factor recognition mechanisms

description: Additional file 1 : Table S1. Multimeric motif PFMs.
DOI: 10.6084/m9.figshare.16767613
title: Additional file 3 of Global properties of regulatory sequences are predicted by transcription factor recognition mechanisms

description: Additional file 3 : Table S2. Exact file IDs and links to all data obtained from ENCODE and Roadmap Epigenome.
DOI: 10.6084/m9.figshare.16767613.v1
title: Additional file 3 of Global properties of regulatory sequences are predicted by transcription factor recognition mechanisms

description: Additional file 3 : Table S2. Exact file IDs and links to all data obtained from ENCODE and Roadmap Epigenome.
DOI: 10.6084/m9.figshare.16767616
title: Additional file 4 of Global properties of regulatory sequences are predicted by transcription factor recognition mechanisms

description: Additional file 4 : Table S3. CisBP IDs and gene names for motifs used in LR Model.
DOI: 10.6084/m9.figshare.16767616.v1
title: Additional file 4 of Global properties of regulatory sequences are predicted by transcription factor recognition mechanisms

description: Additional file 4 : Table S3. CisBP IDs and gene names for motifs used in LR Model.
DOI: 10.6084/m9.figshare.16767619
title: Additional file 5 of Global properties of regulatory sequences are predicted by transcription factor recognition mechanisms

description: Additional file 5 : Table S4. Poisson estimates and multimeric motif hits calculations.
DOI: 10.6084/m9.figshare.16767619.v1
title: Additional file 5 of Global properties of regulatory sequences are predicted by transcription factor recognition mechanisms

description: Additional file 5 : Table S4. Poisson estimates and multimeric motif hits calculations.
DOI: 10.6084/m9.figshare.16767644
title: Additional file 2 of Alteration in perceived health status of those aged 55 to 65 between 2010 and 2017 in France: role of socioeconomic determinants

description: Additional file 2: Supplementary file 2. Characterics of people aged 55–65 in 2010 and 2017 according to socioeconomic determinants.
DOI: 10.6084/m9.figshare.16767644.v1
title: Additional file 2 of Alteration in perceived health status of those aged 55 to 65 between 2010 and 2017 in France: role of socioeconomic determinants

description: Additional file 2: Supplementary file 2. Characterics of people aged 55–65 in 2010 and 2017 according to socioeconomic determinants.
DOI: 10.6084/m9.figshare.16767647
title: Additional file 3 of Alteration in perceived health status of those aged 55 to 65 between 2010 and 2017 in France: role of socioeconomic determinants

description: Additional file 3: Supplementary file 3. Change in perceived health between 2010 and 2017 according to socioeconomic determinants (relative risk ratios and 95% confidence interval), bivariate models, among those aged 55–65, by gender.
DOI: 10.6084/m9.figshare.16767647.v1
title: Additional file 3 of Alteration in perceived health status of those aged 55 to 65 between 2010 and 2017 in France: role of socioeconomic determinants

description: Additional file 3: Supplementary file 3. Change in perceived health between 2010 and 2017 according to socioeconomic determinants (relative risk ratios and 95% confidence interval), bivariate models, among those aged 55–65, by gender.
DOI: 10.6084/m9.figshare.16767694
title: Additional file 1 of Aptitude of endophytic microbes for production of novel biocontrol agents and industrial enzymes towards agro-industrial sustainability

description: Additional file 1. Details of published articles on endophytes.
DOI: 10.6084/m9.figshare.16767686
title: Additional file 1 of Application of dried blood spot sample pooling strategies for Plasmodium 18S rRNA biomarker testing to facilitate identification of infected persons in large-scale epidemiological studies

description: Additional file 1: Text S1. Calculation of total test counts in the GUI for the square matrix pooling scheme. Total test count was the sum of tests for screening pools and individual deconvolution samples. Screening tests for pools was calculated as 2 × N × (number of samples/ N2). If an average of positive sample in each pool was calculated ≤ 1, deconvolution was determined not necessary (shown in Additional file 4: Fig. S3A); if the average of positive samples in each pool was calculated &gt; 1, the Microsoft Excel GUI program assumed that the positive samples were distributed evenly in the matrix, shown in Additional file 4: Fig. S3B. The program counted the total number of pools as QUOTIENT plus one. If the number of positive cases were greater than the total number of pools, the program used function MOD to determine the number of pools having additional one positive case, while the difference would be the pools having one less positive case. The number of positive cases in the former pools were determined using the ROUNDUP function for the predicted positive cases divided by the total number of pools; the number of positive cases in latter pools were determined using the ROUNDDOWN function. The number of tests to deconvolute each positive pool was all members in positive Row pools or Column pools.
DOI: 10.6084/m9.figshare.16767686.v1
title: Additional file 1 of Application of dried blood spot sample pooling strategies for Plasmodium 18S rRNA biomarker testing to facilitate identification of infected persons in large-scale epidemiological studies

description: Additional file 1: Text S1. Calculation of total test counts in the GUI for the square matrix pooling scheme. Total test count was the sum of tests for screening pools and individual deconvolution samples. Screening tests for pools was calculated as 2 × N × (number of samples/ N2). If an average of positive sample in each pool was calculated ≤ 1, deconvolution was determined not necessary (shown in Additional file 4: Fig. S3A); if the average of positive samples in each pool was calculated &gt; 1, the Microsoft Excel GUI program assumed that the positive samples were distributed evenly in the matrix, shown in Additional file 4: Fig. S3B. The program counted the total number of pools as QUOTIENT plus one. If the number of positive cases were greater than the total number of pools, the program used function MOD to determine the number of pools having additional one positive case, while the difference would be the pools having one less positive case. The number of positive cases in the former pools were determined using the ROUNDUP function for the predicted positive cases divided by the total number of pools; the number of positive cases in latter pools were determined using the ROUNDDOWN function. The number of tests to deconvolute each positive pool was all members in positive Row pools or Column pools.
DOI: 10.6084/m9.figshare.16767689
title: Additional file 2 of Application of dried blood spot sample pooling strategies for Plasmodium 18S rRNA biomarker testing to facilitate identification of infected persons in large-scale epidemiological studies

description: Additional file 2: Text S2. Primers/probes concentrations used for the UW qRT-PCR assay and DNA sequences. Plasmodium falciparum qRT-PCR employed 0.4 µM of PfDDT1451F21 (5’-GCGAGTACACTATATTCTTAT-3’), 0.4 µM of PfDDT1562R21 (5’-ATTATTAGTAGAACAGGGAAA-3’) and 0.1 µM of Pf probe (5'-[6-FAM]-ATTTATTCAGTAATCAAATTAGGAT-3'); for Pan Plasmodium qRT-PCR, they were 0.2 µM of PanDDT1043F19 (5’-AAAGTTAAGGGAGTGAAGA-3’), 0.2 µM of PanDDT1197R22 (5’-AAGACTTTGATTTCTCATAAGG -3’) and 0.1 µM of Pan probe (5'-[CAL Fluor Orange 560]-ACCGTCGTAATCTTAACCATAAACTATGCCGACTAG-3'); for TBP RT-PCR, they were 0.1 µM of TBP forward primer (5’-GATAAGAGAGCCACGAACCAC-3’), 0.1 µM of TBP reverse primer (5’- CAAGAACTTAGCTGGAAAACCC-3’) and 0.1 µM of TBP probe (5'-[Quasar 670]- CACAGGAGCCAAGAGTGAAGAACAGT-3').
DOI: 10.6084/m9.figshare.16767689.v1
title: Additional file 2 of Application of dried blood spot sample pooling strategies for Plasmodium 18S rRNA biomarker testing to facilitate identification of infected persons in large-scale epidemiological studies

description: Additional file 2: Text S2. Primers/probes concentrations used for the UW qRT-PCR assay and DNA sequences. Plasmodium falciparum qRT-PCR employed 0.4 µM of PfDDT1451F21 (5’-GCGAGTACACTATATTCTTAT-3’), 0.4 µM of PfDDT1562R21 (5’-ATTATTAGTAGAACAGGGAAA-3’) and 0.1 µM of Pf probe (5'-[6-FAM]-ATTTATTCAGTAATCAAATTAGGAT-3'); for Pan Plasmodium qRT-PCR, they were 0.2 µM of PanDDT1043F19 (5’-AAAGTTAAGGGAGTGAAGA-3’), 0.2 µM of PanDDT1197R22 (5’-AAGACTTTGATTTCTCATAAGG -3’) and 0.1 µM of Pan probe (5'-[CAL Fluor Orange 560]-ACCGTCGTAATCTTAACCATAAACTATGCCGACTAG-3'); for TBP RT-PCR, they were 0.1 µM of TBP forward primer (5’-GATAAGAGAGCCACGAACCAC-3’), 0.1 µM of TBP reverse primer (5’- CAAGAACTTAGCTGGAAAACCC-3’) and 0.1 µM of TBP probe (5'-[Quasar 670]- CACAGGAGCCAAGAGTGAAGAACAGT-3').
DOI: 10.6084/m9.figshare.16767692
title: Additional file 3 of Application of dried blood spot sample pooling strategies for Plasmodium 18S rRNA biomarker testing to facilitate identification of infected persons in large-scale epidemiological studies

description: Additional file 3: File S1. Estimation tool for maximum test counts for the two-stage hierarchy pooling scheme. File S2. Estimation tool for maximum test counts for square matrix pooling scheme. File S3. Estimation tool for maximum test counts for the three-stage hierarchy pooling scheme.
DOI: 10.6084/m9.figshare.16767692.v1
title: Additional file 3 of Application of dried blood spot sample pooling strategies for Plasmodium 18S rRNA biomarker testing to facilitate identification of infected persons in large-scale epidemiological studies

description: Additional file 3: File S1. Estimation tool for maximum test counts for the two-stage hierarchy pooling scheme. File S2. Estimation tool for maximum test counts for square matrix pooling scheme. File S3. Estimation tool for maximum test counts for the three-stage hierarchy pooling scheme.
DOI: 10.6084/m9.figshare.16767694.v1
title: Additional file 1 of Aptitude of endophytic microbes for production of novel biocontrol agents and industrial enzymes towards agro-industrial sustainability

description: Additional file 1. Details of published articles on endophytes.
DOI: 10.6084/m9.figshare.16767707
title: Additional file 2 of Genome-wide identification, genomic organization, and expression profiling of the CONSTANS-like (COL) gene family in petunia under multiple stresses

description: Additional file 2: Table S7. COL genes identified in representative plants.
DOI: 10.6084/m9.figshare.16767707.v1
title: Additional file 2 of Genome-wide identification, genomic organization, and expression profiling of the CONSTANS-like (COL) gene family in petunia under multiple stresses

description: Additional file 2: Table S7. COL genes identified in representative plants.
DOI: 10.6084/m9.figshare.16551375
title: Phasmatodea GENE 2021

description: The phylogenic position of Aschiphasmatidae in Euphasmatodea based on mitochondrial genomic evidence <br>
DOI: 10.6084/m9.figshare.16767277
title: Cartes at al_summer shade data set.xlsx

description: Data used in study Responses of Outdoor Housed Dairy Cows to Shade Access during the Prepartum Period under Temperate Summer Conditions
DOI: 10.5519/qd.qx0hvc8f
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (140 records)
DOI: 10.5281/zenodo.3998453
title: Development of a global dataset of Wetland Area and Dynamics for Methane Modeling (WAD2M)

description: Seasonal and interannual variations in global wetland area is a strong driver of fluctuations in global methane (CH<sub>4</sub>) emissions. Current maps of global wetland extent vary with wetland definition, causing substantial disagreement and large uncertainty in estimates of wetland methane emissions. To reconcile these differences for large-scale wetland CH<sub>4</sub> modeling, we developed a global Wetland Area and Dynamics for Methane Modeling (WAD2M) dataset at ~25 km resolution at equator (0.25 arc-degree) at monthly time-step for 2000-2018. WAD2M combines a time series of surface inundation based on active and passive microwave remote sensing at coarse resolution (~25 km) with six static datasets that discriminate inland waters, agriculture, shoreline, and non-inundated wetlands. We exclude all permanent water bodies (e.g. lakes, ponds, rivers, and reservoirs), coastal wetlands (e.g., mangroves and seagrasses), and rice paddies to only represent spatiotemporal patterns of inundated and non-inundated vegetated wetlands. Globally, WAD2M estimates the long-term maximum wetland area at 13.0 million km<sup>2</sup> (Mkm<sup>2</sup>), which can be separated into three categories: mean annual minimum of inundated and non-inundated wetlands at 3.5 Mkm<sup>2</sup>, seasonally inundated wetlands at 4.0 Mkm<sup>2</sup> (mean annual maximum minus mean annual minimum), and intermittently inundated wetlands at 5.5 Mkm<sup>2</sup> (long-term maximum minus mean annual maximum). WAD2M has good spatial agreements with independent wetland inventories for major wetland complexes, i.e., the Amazon Lowland Basin and West Siberian Lowlands, with high Cohen’s kappa coefficient of 0.54 and 0.70 respectively among multiple wetlands products. By evaluating the temporal variation of WAD2M against modeled prognostic inundation (i.e., TOPMODEL) and satellite observations of inundation and soil moisture, we show that it adequately represents interannual variation as well as the effect of El Niño-Southern Oscillation on global wetland extent. This wetland extent dataset will improve estimates of wetland CH<sub>4</sub> fluxes for global-scale land surface modeling. Update: Oct.08.2021 Documentation for WAD2M Version 2.0 can be found at WAD2M_V2_update
DOI: 10.6084/m9.figshare.15052146
title: Risk Odors Deriving from Predator Abdominal Gland Secretions Mediate Non-Consumptive Effects on Prey

description: data1: the results of Y-olfactometer bioassays in the laboratory with small brown planthoppers and rove beetle.data2: the time small brown planthopper spent feeing, walking, non-feeding quiescence, and on plants when exposed to predation risks from female rove beetle AGS resemblances.data3: the time small brown planthopper spent feeing, walking, non-feeding quiescence, and on plants when exposed to predation risks from male rove beetle AGS resemblances.
DOI: 10.6084/m9.figshare.15052146.v2
title: Risk Odors Deriving from Predator Abdominal Gland Secretions Mediate Non-Consumptive Effects on Prey

description: data1: the results of Y-olfactometer bioassays in the laboratory with small brown planthoppers and rove beetle.data2: the time small brown planthopper spent feeing, walking, non-feeding quiescence, and on plants when exposed to predation risks from female rove beetle AGS resemblances.data3: the time small brown planthopper spent feeing, walking, non-feeding quiescence, and on plants when exposed to predation risks from male rove beetle AGS resemblances.
DOI: 10.6084/m9.figshare.15052146.v1
title: Risk Odors Deriving from Predator Abdominal Gland Secretions Mediate Non-Consumptive Effects on Prey

description: data1: the results of Y-olfactometer bioassays in the laboratory with small brown planthoppers and rove beetle.data2: the results of the time small brown planthopper spend on walking, being stationary and grooming in the female rove beetles liquid treatments.data3: the results of the time small brown planthopper spend on walking, being stationary and grooming in the female rove beetles liquid treatments.<br>
DOI: 10.6084/m9.figshare.16768339
title: Supplementary Material for: Early Antibiotic Exposure Is Not Detrimental to Therapeutic Effect from Immunotherapy in Hepatocellular Carcinoma

description: <b><i>Background and Rationale:</i></b> Immune checkpoint inhibitor (ICI) therapy is an expanding therapeutic option for hepatocellular carcinoma (HCC). Antibiotics (ATB) taken prior to or early during ICI therapy can impact immunotherapy efficacy across indications; however, the effect of ATB is undefined in HCC. <b><i>Methods:</i></b> In a large international cohort of 450 ICI recipients from Europe, North America, and Asia, we categorized patients according to timing of ATB focusing on exposure within −30 to +30 days from ICI (early immunotherapy period [EIOP]). EIOP was evaluated in association with overall survival (OS), progression-free survival (PFS), and best radiologic response using RECIST 1.1 criteria. <b><i>Results:</i></b> Our study comprised mostly cirrhotic (329, 73.3%) males (355, 79.1%) with a Child-Turcotte Pugh class of A (332, 73.9%), receiving ICI after 1 therapy line (251, 55.9%) for HCC of Barcelona clinic liver cancer stage C (325, 72.4%). EIOP (<i>n</i> = 170, 37.9%) was independent of baseline clinicopathologic features of HCC and correlated with longer PFS (6.1 vs. 3.7 months, log-rank <i>p</i> = 0.0135). EIOP+ patients had similar OS, overall response, and disease control rates (DCRs) compared to EIOP. The effect of EIOP persisted in landmark time analyses and in multivariable models, confirming the independent predictive role of EIOP in influencing PFS following adjustment for covariates reflective of tumor burden, liver function, and ICI regimen administered. In patients receiving programmed cell death-1 receptor/ligand inhibitors monotherapy, EIOP was also associated with higher DCRs (61.4% vs. 50.9%, <i>p</i> = 0.0494). <b><i>Conclusions:</i></b> Unlike other oncological indications, ATB in the 30 days before or after ICI initiation is associated with improved benefit from immunotherapy, independent of disease and treatment-related features. Evaluation of the immune microbiologic determinants of response to ICI in HCC warrants further investigation.
DOI: 10.26182/ek4w-hb63
title: Validation of residual resilience measure - dataset
DOI: 10.6084/m9.figshare.16766938
title: MEG_EEG_data_viewing_scene_pictures

description: This data set includes MEG and EEG data while the same participants view 362 scene images. Each image is shown 3-6 to 6 and the single-trial evoked responses were averaged across the repetitions.<br><br>`EEG.zip` and `MEG.zip` contain the EEG and MEG data [n_images, n_times, n_channels] of the averaged response, after preprocessing. Note that the number of trials used were the first m repetitions of shown images, where m = min(m1, m2), and m1 and m2 are the number of repetitions in the MEG and EEG session. <br><br>`EEG_no_aspect.zip` and `MEG_no_aspect.zip` are similar averaged response, where the variables about the image width, hights, aspect ratio and areas are regressed out from the response, see below for more on experiment and analysis. <br><br>Yang, Y., Tarr, M. J., Kass, R. E., & Aminoff, E. M. (2019). Exploring spatiotemporal neural dynamics of the human visual cortex. <i>Human brain mapping</i>, <i>40</i>(14), 4213-4238.<br><br>and <br>Ying Yang's thesis, Chapter 6<br>https://scholar.google.com/citations?view_op=view_citation&hl=en&user=6-8cMQ8AAAAJ&citation_for_view=6-8cMQ8AAAAJ:P7Ujq4OLJYoC<br><br>and <br>https://figshare.com/articles/dataset/MEG_scene_data/7991615<br><br><br><br>
DOI: 10.3886/e151481
title: Intertemporal Trust Game

description: We experimentally investigate the effect of timing of implementation of decisions on trust and trustworthiness. In the “Today” treatment, a standard trust game is run and subjects receive payment in the same date of the experiment. In the “Later” treatment, subjects make decisions in the same date as the today treatment, while the decisions are implemented (and hence payment) in a week. The later treatment captures a key feature of social interactions where decisions are often implemented in the future rather than immediately. Consistent with our model, we find that both trust and trustworthiness are lower in the later treatment.
description: It is not applicable.
description: Response Rates: For experiment 1, 287 subjects participated in four experimental sessions. We exclude 4 subjects: two due to not completing the trust game and two due to sending the amount more than the maximal amount as a trustor to the trustee. This leaves us with 283 subjects in our sample. The response rate was 98.6 percent. <br>The experiment 2 was conducted with 43 subjects. The response rate was 100 percent. <br>
description: Presence of Common Scales: the three-item Cognitive Reflection Test (CRT, Frederick, 2005).
description: The sample is college students in business major who enrolled in a required course in two Chinese large-scale universities.
description: college students in business major in China. Smallest Geographic Unit: It is not applicable
description: cognitive assessment test; on-site questionnaire;
DOI: 10.3886/e151481v1
title: Intertemporal Trust Game

description: We experimentally investigate the effect of timing of implementation of decisions on trust and trustworthiness. In the “Today” treatment, a standard trust game is run and subjects receive payment in the same date of the experiment. In the “Later” treatment, subjects make decisions in the same date as the today treatment, while the decisions are implemented (and hence payment) in a week. The later treatment captures a key feature of social interactions where decisions are often implemented in the future rather than immediately. Consistent with our model, we find that both trust and trustworthiness are lower in the later treatment.
description: It is not applicable.
description: Response Rates: For experiment 1, 287 subjects participated in four experimental sessions. We exclude 4 subjects: two due to not completing the trust game and two due to sending the amount more than the maximal amount as a trustor to the trustee. This leaves us with 283 subjects in our sample. The response rate was 98.6 percent. <br>The experiment 2 was conducted with 43 subjects. The response rate was 100 percent. <br>
description: Presence of Common Scales: the three-item Cognitive Reflection Test (CRT, Frederick, 2005).
description: The sample is college students in business major who enrolled in a required course in two Chinese large-scale universities.
description: college students in business major in China. Smallest Geographic Unit: It is not applicable
description: cognitive assessment test; on-site questionnaire;
DOI: 10.4225/50/57635c7b4f722
title: The MALT90 line catalog

description: The Millimetre Astronomy Legacy Team 90 GHz (MALT90) survey aims to characterise the physical and  chemical evolution of high-mass clumps. Recently completed, it mapped 90 GHz line emission toward 3246 high-mass clumps identified from the ATLASGAL 870um Galactic plane survey.  By utilising the broad frequency coverage of the Mopra telescope's spectrometer, maps in 16 different emission lines were simultaneously obtained. This catalog reports the detected line emission, generated by Gaussian profile fitting to spectra extracted toward each clumps' 870um dust continuum peak.