cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3190150.v5
title: Project descriptions, midterm and final evaluations from a national government-funded project in Denmark in 2010-2014, Forebyggelsesindsatser i nærmiljøet (Prevention efforts in the local community), where 12 municipalities were involved.

description: The data materials are project descriptions, midterm and final evaluations from a national government-funded project in Denmark in 2010-2014, <i>Forebyggelsesindsatser i nærmiljøet </i>(Prevention efforts in the local community), where 12 municipalities were involved. The project aimed to strengthen health and wellbeing in deprived neighborhoods. The Danish Health Authority committed these municipalities to work with predetermined risk factors of mental health, smoking and physical activity as well as either diet or alcohol use. Testing of methods for recruitment of the marginalized groups was also part of the project’s framework. The types of the interventions were not specified in advance by the Danish Health Authority. Therefore, the project employees had an open framework to shape the local interventions as long as they were aimed at the predetermined risk factors: mental health, smoking, physical activity, and diet or alcohol. The local interventions ranged widely, including exercise classes, smoking cessation courses, cooking teams and other social activities. Other interventions were more creative; for example, one municipality used activities with art to promote mental health. The collected documents consisted of 1,500 pages of written material.
DOI: 10.6084/m9.figshare.3190150.v4
title: FIN data.pdf

description: The data materials are project descriptions, midterm and final evaluations from a national government-funded project in Denmark in 2010-2014, <i>Forebyggelsesindsatser i nærmiljøet </i>(Prevention efforts in the local community), where 12 municipalities were involved. The project aimed to strengthen health and wellbeing in deprived neighborhoods. The Danish Health Authority committed these municipalities to work with predetermined risk factors of mental health, smoking and physical activity as well as either diet or alcohol use. Testing of methods for recruitment of the marginalized groups was also part of the project’s framework. The types of the interventions were not specified in advance by the Danish Health Authority. Therefore, the project employees had an open framework to shape the local interventions as long as they were aimed at the predetermined risk factors: mental health, smoking, physical activity, and diet or alcohol. The local interventions ranged widely, including exercise classes, smoking cessation courses, cooking teams and other social activities. Other interventions were more creative; for example, one municipality used activities with art to promote mental health. The collected documents consisted of 1,500 pages of written material.
DOI: 10.6084/m9.figshare.3189766
title: Crizotinib PLOS One File final.sav

description: Total body metabolic tumor response in ALK positive non-small-cell lung cancer patients treated with crizotinib
DOI: 10.6084/m9.figshare.3189772.v1
title: 22 July 2014 VID00001 Discussion

description: Discussion notes on video VID00001 taken on 22 July 2014. This video is notable for containing frames wherein both a black bear and two anomalous large non-human primates are visible in the same frame. This data directly addresses the question of species misidentification.<br>Original and two versions of adjusted frames bracketing the frame at VID00001 0 20 28-60 are posted in separate folders. For convenience, other relevant frames and processed images are made available here.<br>The original video is located in the 22 July 2014 Field Notes folder. See also 22 July 2014 Field Notes for additional details on the data collection.
DOI: 10.6084/m9.figshare.3189766.v1
title: Crizotinib PLOS One File final.sav

description: Total body metabolic tumor response in ALK positive non-small-cell lung cancer patients treated with crizotinib
DOI: 10.6084/m9.figshare.3189772.v2
title: 22 July 2014 VID00001 Discussion

description: Discussion notes on video VID00001 taken on 22 July 2014. This video is notable for containing frames wherein both a black bear and two anomalous large non-human primates are visible in the same frame. This data directly addresses the question of species misidentification.<br>Original and two versions of adjusted frames bracketing the frame at VID00001 0 20 28-60 are posted in separate folders. For convenience, other relevant frames and processed images are made available here.<br>The original video is located in the 22 July 2014 Field Notes folder. See also 22 July 2014 Field Notes for additional details on the data collection.
DOI: 10.6084/m9.figshare.3189673
title: HMBEC morphology images plate 1 replicate A

description: HMBEC cells were transfected with siRNAs and underwent migration<br>
DOI: 10.6084/m9.figshare.3190108.v4
title: Valuation of Morality and Mind: Morality as a Metacognitive Byproduct (19 July 2016a - Preprint Draft)

description: Title: Valuation of Morality and Mind: Morality as a Metacognitive Byproduct (19 July 2016a - Preprint Draft)<br><br>Abstract: The organism has evolved to view itself as a sentient being. It is theorised that morality is a byproduct of the high valuation of mental properties (the nature of its theory of mind). Eleven studies were conducted with 2675 participants. A positive association was confirmed between valuation of explicit morality, neutral (general) mind as measured by sentience, and significance of (specific) mind as measured by integrity (1, 2, 3, 4, 5, 6). The moral worth ratings of a protagonist were affected by manipulating perceived significance of mind as expressed by scope and intensity of thought (7). 50% of participants thought morality applies exclusively to creatures with minds (8, 9). A positive association was found between the self-awareness and moral worth ratings of a variety of creatures and human characters (10). Furthermore, the moral worth ratings of a human being and `philosophical phantom' (sentient inanimate object) were greater than those of a philosophical zombie and rock (11). This research suggests that morality is based on the belief in mind. Contrary to H. Gray et al. [1] however, the results suggest that valuation of experience (sentience) and agency (significance of mind) are not independent, as morality appears preconditioned upon the perception of (or assumption of) sentience. Furthermore, contrary to dyadic models [2], preliminary analysis supported the prediction of self and other-directed morality.
DOI: 10.6084/m9.figshare.3189658
title: DETERMINATION OF THE SUITABLE PARAMETERS FOR MODIFIED CHISEL PLOUGH AS A PART FOR COMBINATION TILLAGE UNIT

description: Experiments were conducted to study the suitable parameters for a modified chisel plough, which can be used as attached part with primary or secondary tillage machines. The main parameters used in this study were different implement forward speeds, types of shares, number of shanks and entrance angle. The experiments showed that the best parameters of manufacturing chisel unit was by using 4 tines, pointed share and 30° degree of entrance angle to obtain the best value of soil penetration resistance and good percentage less than 10 cm.
DOI: 10.6084/m9.figshare.3189724.v1
title: Stewards - Knowledge and Communication Hub

description: Introducing the concept of multi-domain stewards serving as a knowledge and communication hub for effective long-term scientific stewardship of digital environmental data products.
DOI: 10.6084/m9.figshare.3189658.v1
title: DETERMINATION OF THE SUITABLE PARAMETERS FOR MODIFIED CHISEL PLOUGH AS A PART FOR COMBINATION TILLAGE UNIT

description: Experiments were conducted to study the suitable parameters for a modified chisel plough, which can be used as attached part with primary or secondary tillage machines. The main parameters used in this study were different implement forward speeds, types of shares, number of shanks and entrance angle. The experiments showed that the best parameters of manufacturing chisel unit was by using 4 tines, pointed share and 30° degree of entrance angle to obtain the best value of soil penetration resistance and good percentage less than 10 cm.
DOI: 10.6084/m9.figshare.3189724.v3
title: Stewards - Knowledge and Communication Hub

description: Introducing the concept of multi-domain stewards serving as a knowledge and communication hub for effective long-term scientific stewardship of digital environmental data products.
DOI: 10.6084/m9.figshare.3189724.v5
title: Stewards - Knowledge and Communication Hub

description: Introducing the concept of multi-domain stewards serving as a knowledge and communication hub for effective long-term scientific stewardship of digital environmental data products.
DOI: 10.6084/m9.figshare.3189625
title: Economy of Nature Analysis Data

description: This fileset includes the data required to substantiate the claims concerning the frequency of appearance of the phrase "economy of nature" in the article on the economy of nature by Charles H. Pence and Daniel G. Swaim.<br>These data were generated using the evoText website, http://www.evotext.org, by running a search for "economy of nature" within the journal <i>Nature,</i> and then plotting the dates of these articles while normalizing against a dataset including the entirety of the journal <i>Nature.</i>
DOI: 10.6084/m9.figshare.3189724.v4
title: Stewards - Knowledge and Communication Hub

description: Introducing the concept of multi-domain stewards serving as a knowledge and communication hub for effective long-term scientific stewardship of digital environmental data products.
DOI: 10.6084/m9.figshare.3189625.v1
title: Economy of Nature Analysis Data

description: This fileset includes the data required to substantiate the claims concerning the frequency of appearance of the phrase "economy of nature" in the article on the economy of nature by Charles H. Pence and Daniel G. Swaim.<br>These data were generated using the evoText website, http://www.evotext.org, by running a search for "economy of nature" within the journal <i>Nature,</i> and then plotting the dates of these articles while normalizing against a dataset including the entirety of the journal <i>Nature.</i>
DOI: 10.6084/m9.figshare.3189586
title: Dynamic Emotional Faces Generalise Better to a New Expression but not to a New View

description: In Experiment 1, it tested the prediction that learning dynamic facial expressions facilitates better transfer to a new emotional expression relative to learning static images of facial expressions. It also assessed whether learning three expressions is equally beneficial for the transfer in the dynamic and static expression conditions. the transfer from learning to a new expression was assessed in a 2 ′ 2 mixed design. The within-participants variable was level of exposure (multiple vs. single), and the between-participants variable was stimulus format (dynamic vs. static). The dependent variables were sensitivity (d’) and criterion (c) that combined hits and false alarms.<br><br><br>In Experiment 2,Participants learned faces either in a frontal or a three-quarter view in static or dynamic format. In the test session, the learned faces were either shown in the same view or a different view. There were three independent variables in this experiment: learn view (frontal vs. three-quarter), test view (frontal vs. three-quarter), and image format (dynamic vs. static). The learn view and image format were between-participant factors, whereas the test view was a within-participant factor.<br><br><br><br>
DOI: 10.6084/m9.figshare.3189580
title: OSI2016 Tweets

description: Collection of tweets from the Open Scholarship Initiative's inaugural meeting in April, 2016.<br>
DOI: 10.6084/m9.figshare.3189613.v1
title: 2015: An introduction to wildlife genetics

description: Seminar to high school biology students
DOI: 10.6084/m9.figshare.3189586.v2
title: Dynamic Emotional Faces Generalise Better to a New Expression but not to a New View

description: In Experiment 1, it tested the prediction that learning dynamic facial expressions facilitates better transfer to a new emotional expression relative to learning static images of facial expressions. It also assessed whether learning three expressions is equally beneficial for the transfer in the dynamic and static expression conditions. the transfer from learning to a new expression was assessed in a 2 ′ 2 mixed design. The within-participants variable was level of exposure (multiple vs. single), and the between-participants variable was stimulus format (dynamic vs. static). The dependent variables were sensitivity (d’) and criterion (c) that combined hits and false alarms.<br><br><br>In Experiment 2,Participants learned faces either in a frontal or a three-quarter view in static or dynamic format. In the test session, the learned faces were either shown in the same view or a different view. There were three independent variables in this experiment: learn view (frontal vs. three-quarter), test view (frontal vs. three-quarter), and image format (dynamic vs. static). The learn view and image format were between-participant factors, whereas the test view was a within-participant factor.<br><br><br><br>
DOI: 10.6084/m9.figshare.3189613.v2
title: 2015: An introduction to wildlife genetics

description: Seminar to high school biology students
DOI: 10.6084/m9.figshare.3189586.v1
title: The data of Experiment 1 and 2

description: In Experiment 1, it tested the prediction that learning dynamic facial expressions facilitates better transfer to a new emotional expression relative to learning static images of facial expressions. It also assessed whether learning three expressions is equally beneficial for the transfer in the dynamic and static expression conditions. the transfer from learning to a new expression was assessed in a 2 ′ 2 mixed design. The within-participants variable was level of exposure (multiple vs. single), and the between-participants variable was stimulus format (dynamic vs. static). The dependent variables were sensitivity (d’) and criterion (c) that combined hits and false alarms.<br><br><br>In Experiment 2,Participants learned faces either in a frontal or a three-quarter view in static or dynamic format. In the test session, the learned faces were either shown in the same view or a different view. There were three independent variables in this experiment: learn view (frontal vs. three-quarter), test view (frontal vs. three-quarter), and image format (dynamic vs. static). The learn view and image format were between-participant factors, whereas the test view was a within-participant factor.<br><br><br><br>
DOI: 10.6084/m9.figshare.3189616.v2
title: 2006: Genetic Markers and Evolution: Lessons from an Australian wallaby

description: Slides from a public talk I gave during Australian Science Week in 2006
DOI: 10.6084/m9.figshare.3189613.v3
title: 2015: An introduction to wildlife genetics

description: Seminar I gave to high school biology students on the use of genetics in ecology.
DOI: 10.6084/m9.figshare.3189403
title: Air pollution-induced placental epigenetic alterations in early life: a candidate miRNA approach

description: Particulate matter (PM) exposure during <i>in utero</i> life may entail adverse health outcomes in later-life. Air pollution's adverse effects are known to alter gene expression profiles, which can be regulated by microRNAs (miRNAs). We investigate the potential influence of air pollution exposure in prenatal life on placental miRNA expression. Within the framework of the ENVIR<i>ON</i>AGE birth cohort, we measured the expression of six candidate miRNAs in placental tissue from 210 mother-newborn pairs by qRT-PCR. Trimester-specific PM<sub>2.5</sub> exposure levels were estimated for each mother's home address using a spatiotemporal model. Multiple regression models were used to study miRNA expression and <i>in utero</i> exposure to PM<sub>2.5</sub> over various time windows during pregnancy. The placental expression of miR-21 (−33.7%, 95% CI: −53.2 to −6.2, <i>P</i> = 0.022), miR-146a (−30.9%, 95% CI: −48.0 to −8.1, <i>P</i> = 0.012) and miR-222 (−25.4%, 95% CI: −43.0 to −2.4, <i>P</i> = 0.034) was inversely associated with PM<sub>2.5</sub> exposure during the 2nd trimester of pregnancy, while placental expression of miR-20a and miR-21 was positively associated with 1st trimester exposure. Tumor suppressor phosphatase and tensin homolog <i>(PTEN)</i> was identified as a common target of the miRNAs significantly associated with PM exposure. Placental <i>PTEN</i> expression was strongly and positively associated (+59.6% per 5 µg/m³ increment, 95% CI: 26.9 to 100.7, <i>P</i> &lt; 0.0001) with 3rd trimester PM<sub>2.5</sub> exposure. Further research is required to establish the role these early miRNA and mRNA expression changes might play in PM-induced health effects. We provide molecular evidence showing that <i>in utero</i> PM<sub>2.5</sub> exposure affects miRNAs expression as well as its downstream target <i>PTEN</i>.
DOI: 10.6084/m9.figshare.3189436
title: Ventura et al 2016- citizen farm visit raw data.xlsx

description: Citizens’ concerns about farm animal welfare are often dismissed on the assumption that they are not well informed about farming practices. We conducted exploratory surveys of interested citizens (n=50) before and after a self-guided tour of a 500-head dairy farm. ‘Before’ survey questions explored perceptions, concerns, and values about dairy cattle farming and welfare, in addition to a short knowledge-based quiz on dairy cattle husbandry. An ‘after’ survey explored the extent to which these constructs shifted after the tour. Before, most participants correctly answered quiz questions about general feeding and housing practices, but scores were low on questions about specific practices such as cow-calf separation. Participants considered several elements as necessary for a ‘good’ life for dairy cattle: fresh food and water, pasture access, gentle handling, space, shelter, hygiene, fresh air and sunshine, social companions, absence of stress, health, and safety from predators. These elements reflect a diverse conception of animal welfare that incorporates values for physical and mental well-being, natural living, and humane care. The visit had a mixed effect on perceptions of whether dairy cows had a ‘good’ life, improving perceptions for a quarter of participants, worsening perceptions in a third, with no shift in the remaining participants. The visit appeared to mitigate some concerns (e.g. provision of adequate food and water, gentle humane care) while reinforcing or eliciting others (e.g. lack of pasture access, early cow-calf separation). Moreover, animal welfare-relevant values held by participants (e.g. natural living, care) appeared to play an important role in influencing perceptions of farm practices. These results suggest that education and exposure to livestock farming may resolve certain concerns, but other concerns will likely persist, especially when practices conflict with deeply held values around animal care.
DOI: 10.6084/m9.figshare.3189403.v1
title: Air pollution-induced placental epigenetic alterations in early life: a candidate miRNA approach

description: Particulate matter (PM) exposure during <i>in utero</i> life may entail adverse health outcomes in later-life. Air pollution's adverse effects are known to alter gene expression profiles, which can be regulated by microRNAs (miRNAs). We investigate the potential influence of air pollution exposure in prenatal life on placental miRNA expression. Within the framework of the ENVIR<i>ON</i>AGE birth cohort, we measured the expression of six candidate miRNAs in placental tissue from 210 mother-newborn pairs by qRT-PCR. Trimester-specific PM<sub>2.5</sub> exposure levels were estimated for each mother's home address using a spatiotemporal model. Multiple regression models were used to study miRNA expression and <i>in utero</i> exposure to PM<sub>2.5</sub> over various time windows during pregnancy. The placental expression of miR-21 (−33.7%, 95% CI: −53.2 to −6.2, <i>P</i> = 0.022), miR-146a (−30.9%, 95% CI: −48.0 to −8.1, <i>P</i> = 0.012) and miR-222 (−25.4%, 95% CI: −43.0 to −2.4, <i>P</i> = 0.034) was inversely associated with PM<sub>2.5</sub> exposure during the 2nd trimester of pregnancy, while placental expression of miR-20a and miR-21 was positively associated with 1st trimester exposure. Tumor suppressor phosphatase and tensin homolog <i>(PTEN)</i> was identified as a common target of the miRNAs significantly associated with PM exposure. Placental <i>PTEN</i> expression was strongly and positively associated (+59.6% per 5 µg/m³ increment, 95% CI: 26.9 to 100.7, <i>P</i> &lt; 0.0001) with 3rd trimester PM<sub>2.5</sub> exposure. Further research is required to establish the role these early miRNA and mRNA expression changes might play in PM-induced health effects. We provide molecular evidence showing that <i>in utero</i> PM<sub>2.5</sub> exposure affects miRNAs expression as well as its downstream target <i>PTEN</i>.
DOI: 10.6084/m9.figshare.3189436.v1
title: Ventura et al 2016- citizen farm visit raw data.xlsx

description: Citizens’ concerns about farm animal welfare are often dismissed on the assumption that they are not well informed about farming practices. We conducted exploratory surveys of interested citizens (n=50) before and after a self-guided tour of a 500-head dairy farm. ‘Before’ survey questions explored perceptions, concerns, and values about dairy cattle farming and welfare, in addition to a short knowledge-based quiz on dairy cattle husbandry. An ‘after’ survey explored the extent to which these constructs shifted after the tour. Before, most participants correctly answered quiz questions about general feeding and housing practices, but scores were low on questions about specific practices such as cow-calf separation. Participants considered several elements as necessary for a ‘good’ life for dairy cattle: fresh food and water, pasture access, gentle handling, space, shelter, hygiene, fresh air and sunshine, social companions, absence of stress, health, and safety from predators. These elements reflect a diverse conception of animal welfare that incorporates values for physical and mental well-being, natural living, and humane care. The visit had a mixed effect on perceptions of whether dairy cows had a ‘good’ life, improving perceptions for a quarter of participants, worsening perceptions in a third, with no shift in the remaining participants. The visit appeared to mitigate some concerns (e.g. provision of adequate food and water, gentle humane care) while reinforcing or eliciting others (e.g. lack of pasture access, early cow-calf separation). Moreover, animal welfare-relevant values held by participants (e.g. natural living, care) appeared to play an important role in influencing perceptions of farm practices. These results suggest that education and exposure to livestock farming may resolve certain concerns, but other concerns will likely persist, especially when practices conflict with deeply held values around animal care.
DOI: 10.6084/m9.figshare.3189352
title: Datasets and R script for Microbiome Cell Surface Hydrophobicity prediction

description: Training dataset for Microbiome Cell Surface Hydrophobicity study
DOI: 10.6084/m9.figshare.3189613.v5
title: 2015: An introduction to wildlife genetics

description: Seminar I gave to high school biology students on the use of genetics in ecology.
DOI: 10.6084/m9.figshare.3189334
title: 1000 files

description: testing
DOI: 10.6084/m9.figshare.3189280
title: Osyrish - Observational study and survey data

description: Files with data from observational study results to be published in BMC Health Service Research Journal
DOI: 10.6084/m9.figshare.3189334.v2
title: 1000 files

description: testing
DOI: 10.6084/m9.figshare.3189280.v1
title: Osyrish - Observational study and survey data

description: Files with data from observational study results to be published in BMC Health Service Research Journal
DOI: 10.6084/m9.figshare.3189334.v1
title: New draft item

description: testing