cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12715493.v1
title: Data & Code for "Verification of a resetting protocol for an uncontrolled superconducting qubit"

description: Data & Code for "Verification of a resetting protocol for an uncontrolled superconducting qubit" (https://arxiv.org/abs/1911.12536).
DOI: 10.6084/m9.figshare.12715433
title: Data from: Association of vitamin D pathway gene CYP27B1 and CYP2R1 polymorphisms with autoimmune endocrine disorders: a meta-analysis

description: Supplementary tables of manuscript entitled "<b>Association of vitamin D pathway gene CYP27B1 and CYP2R1 polymorphisms with autoimmune endocrine disorders: a meta-analysis</b>".
DOI: 10.6084/m9.figshare.12715418
title: LonP1 regulates mitochondrial network remodeling through the PINK1/Parkin pathway during myoblast differentiation (Supplementary Table-1.docx)

description: Myoblast differentiation is a crucial process for myogenesis. Mitochondria function as an energy-providing machine that is critical to this process, and mitochondrial dysfunction can prevent myoblasts from fusing into myotubes. However, the molecular mechanisms underlying the dynamic regulation of mitochondrial networks remain poorly understood. In the present study, we found that the PTEN induced kinase 1(PINK1) /Parkin (an E3 ubiquitin-protein ligase) pathway is activated at the early stage of myoblast differentiation. Moreover, downregulation of mitofusin 2 (Mfn2) and increased dynamin-related protein 1 (Drp1) resulted in loosely formed mitochondria during this period. Furthermore, selective knockdown of the mitochondrial matrix protein Lon proteinase-1 (LonP1) at the early stage of myoblast differentiation induced mitochondrial depolarization and suppressed the PINK1/Parkin pathway and reduced Mfn2 and Drp1 levels, which blocked mitochondrial remodeling and myoblast differentiation. Overall, these data suggest that LonP1 plays an essential role in maintaining the normal myoblast differentiation process, which partly by regulating PINK1/Parkin mediated mitochondrial remodeling.
DOI: 10.6084/m9.figshare.12715418.v1
title: LonP1 regulates mitochondrial network remodeling through the PINK1/Parkin pathway during myoblast differentiation (Supplementary Table-1.docx)

description: Myoblast differentiation is a crucial process for myogenesis. Mitochondria function as an energy-providing machine that is critical to this process, and mitochondrial dysfunction can prevent myoblasts from fusing into myotubes. However, the molecular mechanisms underlying the dynamic regulation of mitochondrial networks remain poorly understood. In the present study, we found that the PTEN induced kinase 1(PINK1) /Parkin (an E3 ubiquitin-protein ligase) pathway is activated at the early stage of myoblast differentiation. Moreover, downregulation of mitofusin 2 (Mfn2) and increased dynamin-related protein 1 (Drp1) resulted in loosely formed mitochondria during this period. Furthermore, selective knockdown of the mitochondrial matrix protein Lon proteinase-1 (LonP1) at the early stage of myoblast differentiation induced mitochondrial depolarization and suppressed the PINK1/Parkin pathway and reduced Mfn2 and Drp1 levels, which blocked mitochondrial remodeling and myoblast differentiation. Overall, these data suggest that LonP1 plays an essential role in maintaining the normal myoblast differentiation process, which partly by regulating PINK1/Parkin mediated mitochondrial remodeling.
DOI: 10.6084/m9.figshare.12715433.v2
title: Data from: Association of vitamin D pathway gene CYP27B1 and CYP2R1 polymorphisms with autoimmune endocrine disorders: a meta-analysis

description: Supplementary tables of manuscript entitled "<b>Association of vitamin D pathway gene CYP27B1 and CYP2R1 polymorphisms with autoimmune endocrine disorders: a meta-analysis</b>".
DOI: 10.6084/m9.figshare.12715433.v1
title: Supplementary Tables_Association of vitamin D pathway gene CYP27B1 and CYP2R1 polymorphisms with autoimmune endocrine disorders: a meta-analysis

description: Supplementary tables of manuscript entitled "<b>Association of vitamin D pathway gene CYP27B1 and CYP2R1 polymorphisms with autoimmune endocrine disorders: a meta-analysis</b>".
DOI: 10.6084/m9.figshare.12715376
title: Additional file 6 of Catabolism and interactions of uncultured organisms shaped by eco-thermodynamics in methanogenic bioprocesses

description: Additional file 6: Supplementary Tables.
DOI: 10.6084/m9.figshare.12715376.v1
title: Additional file 6 of Catabolism and interactions of uncultured organisms shaped by eco-thermodynamics in methanogenic bioprocesses

description: Additional file 6: Supplementary Tables.
DOI: 10.6084/m9.figshare.12715337
title: Additional file 1 of Loss of Tdp-43 disrupts the axonal transcriptome of motoneurons accompanied by impaired axonal translation and mitochondria function

description: Additional file 1: Supplementary Table 1. List of primers for cloning of shRNAs into pSIH. siRNA sequences are underlined. Supplementary Table 2. List of qPCR primers. Supplementary Table 3. List of transcripts significantly (p&lt;0.05) upregulated in the somatodendritic compartment of Tdp-43 knockdown (T_sd) motoneurons relative to control (G_sd) motoneurons. Supplementary Table 4. List of transcripts significantly (p&lt;0.05) downregulated in the somatodendritic compartment of Tdp-43 knockdown (T_sd) motoneurons relative to control (G_sd) motoneurons. Supplementary Table 5. List of transcripts significantly (p&lt;0.05) upregulated in the axonal compartment of Tdp-43 knockdown (T_ax) motoneurons relative to control (G_ax) motoneurons. Supplementary Table 6. List of transcripts significantly (p&lt;0.05) downregulated in the axonal compartment of Tdp-43 knockdown (T_ax) motoneurons relative to control (G_ax) motoneurons. Supplementary Table 7. List of transcripts significantly (p&lt;0.05) deregulated in the somatodendritic (sd) and axonal (ax) compartment of Tdp-43 knockdown motoneurons relative to control motoneurons.
DOI: 10.6084/m9.figshare.12715325
title: Additional file 2 of Deciphering the mode of action and position of genetic variants impacting on egg number in broiler breeders

description: Additional file 2: Supplementary Table 1. Positional candidate genes for EN.
DOI: 10.6084/m9.figshare.12715325.v1
title: Additional file 2 of Deciphering the mode of action and position of genetic variants impacting on egg number in broiler breeders

description: Additional file 2: Supplementary Table 1. Positional candidate genes for EN.
DOI: 10.6084/m9.figshare.12715202
title: gut microbiome patterns associated wieh somatostatin in patients undergoing pancreaticoduodenectomy:a prospective study

description: Postoperative pancreatic fistula (POPF) is a common and dreaded complication after pancreaticoduodenectomy (PD). The relationship between gut microbiome and POPF has yet to be established. This prospective study aims to analyze the influences of somatostatin on gut microbiome and to characterize the microbial alterations following POPF. 45 Patients were randomly divided into PD group and additional somatostatin therapy group. One fecal sample per patient was preoperatively collected to determine the baseline gut microbiome. Another fecal sample was obtained to observe longitudinal changes. After fecal collection, 50 samples of 25 patients were analyzed by 16S-rRNA gene sequencing. Somatostatin therapy was independent risk factor for affecting the occurrence of POPF and reduced diversity and richness of the gut microbiome. The abundance levels of certain bacteria in the gut microbiome have significantly changed after somatostatin therapy. This phenomenon was also found in patients with or without POPF. Based on the LEfSe analysis, Bifidobacterium and could be used as preoperative valuable biomarkers of somatostatin therapy. In addition, Ruminococcaceae and Akkermansia are microbial predictors to POPF. This prospective study identifies the influence of somatostatin on gut microbiome and discovers the significant biomarkers related to somatostatin and POPF. Our study suggests that gut microbiome may become a potential therapeutic target and diagnostic biomarker of POPF patients.
DOI: 10.6084/m9.figshare.12714419
title: dataset of remote sensing time series for water body change monitoring

description: The dataset is derived from Landsat data which is between DaxiHaizi Reservoir and Chala Reservoir. It consists of one scene selected in July of each year from 1988 to 2008. The resolution of its samples is 30m and its samples contain Red band, Green band, Blue band and Nir band.The datasets have 937 remote image time series change detection samples after selected. It is divided into train datasets and test datasets by the proportion of 0.7 and 0.3.
DOI: 10.6084/m9.figshare.12714425
title: Supplemental Materials for the Philippine Journal of Science paper entitled, "Resistance gene analogs of mango: insights on molecular defenses and evolutionary dynamics"

description: In this study, transcriptomic data (from diverse mango varieties) and whole-genome data (from Alphonso variety) were utilized in order to obtain a comprehensive analysis of mango RGAs
DOI: 10.6084/m9.figshare.12713939
title: Gene database of Clostridium ljungdahlii DSM 13528

description: <i>Clostridium ljungdahlii</i> is a Gram-positive, low GC bacterium that thrives under anaerobic conditions. Able to convert carbon monoxide into ethanol, the bacterium occupies a useful niche in biotechnology, particularly from the perspective of converting waste gases into useful products. Hence, <i>C. ljungdahlii</i> offers an interesting platform for developing into a future biotechnology workhorse in the area of refining C1 compounds into biofuels. This works aims to provide fundamental information of the genetic repertoire of <i>Clostridium ljungdahlii</i> DSM 13528 by parsing the annotated genome sequence of the bacterium downloaded from Genbank. Comprising gene name, gene function, and gene sequence, the resource should find use in a variety of biotechnology workflow aiming to understand functions of genes in the bacterium as well as developing loss-of-function mutants for probing underpinnings of bioprocess inefficiencies.
DOI: 10.6084/m9.figshare.12714152
title: change detection datasets of dual-phase remote images

description: The dataset has 370 samples in the training set and 160 samples in the test set. The sample size is 572*572, time series length of the sample is 2, and the bands are red, green, blue and near-infrared bands. The original data is the Landsat data on July 15, 2009 and July 3, 2019 in the middle and lower reaches of the Tahe River. The resolution of the data is 30m. The semantic change categories are changes between building, road, farmland, water body, desert and woodland. There are 27 categories.
DOI: 10.6084/m9.figshare.12713705
title: PhillipsArdell2020_SOM.tgz

description: Complete code and data for logo figures, statistics, alignments, MrBayes runs, and custom annotations for tRNA genes in twelve species of Drosophila and Musca domestica. Corresponds to "Structural and Genetic Determinants of Convergence in the Drosophila tRNA Structure-Function Map" by Julie Phillips and David H. Ardell, submitted to Molecular Biology and Evolution.
DOI: 10.6084/m9.figshare.12713705.v1
title: PhillipsArdell2020_SOM.tgz

description: Complete code and data for logo figures, statistics, alignments, MrBayes runs, and custom annotations for tRNA genes in twelve species of Drosophila and Musca domestica. Corresponds to "Structural and Genetic Determinants of Convergence in the Drosophila tRNA Structure-Function Map" by Julie Phillips and David H. Ardell, submitted to Molecular Biology and Evolution.
DOI: 10.6084/m9.figshare.12712187
title: Raw Activity Field Data

description: Raw data on anole behavior in the field as directly transcribed from field notebook.
DOI: 10.6084/m9.figshare.12712184
title: Anole Filed Activity Data R

description: Field activity data formatted for use in R. Includes, but column order left to right: Observation #, # of dewlap flaps, % of observation period spent active, body temperature, species, length of observation in seconds.
DOI: 10.6084/m9.figshare.12712187.v1
title: Raw Activity Field Data

description: Raw data on anole behavior in the field as directly transcribed from field notebook.
DOI: 10.6084/m9.figshare.12712178
title: Compiled Plasticity Data

description: Compiled data on laboratory experiments on behavioral thermoregulatory plasticity. This data set includes outlying data points.
DOI: 10.6084/m9.figshare.12712814.v1
title: master_data_archive.csv

description: Data collected at New Mexico Tech to study the relationship between sky temperature and precipitable water in the Socorro, NM climate zone.
DOI: 10.6084/m9.figshare.12712814.v2
title: master_data_archive.csv

description: Data collected at New Mexico Tech to study the relationship between sky temperature and precipitable water in the Socorro, NM climate zone.
DOI: 10.6084/m9.figshare.12711947
title: scarp_c3.csv

description: This file accompanies Appendix II for the Master's thesis of Tyler Scott, Geological Sciences. Arizona State University.<br>Rock traits from machine learning: application to rocky fault scarps<br>Appendix II
DOI: 10.6084/m9.figshare.12711959
title: AnoleRdataBook.csv

description: Field activity organized for R, including for each observation, in column order left to right: Observation number, number of dewlap flaps, % of time spent active, body temperature, species, and length of observation period in seconds.
DOI: 10.6084/m9.figshare.12711947.v1
title: scarp_c3.csv

description: This file accompanies Appendix II for the Master's thesis of Tyler Scott, Geological Sciences. Arizona State University.<br>Rock traits from machine learning: application to rocky fault scarps<br>Appendix II
DOI: 10.6084/m9.figshare.12711959.v1
title: AnoleRdataBook.csv

description: Field activity organized for R, including for each observation, in column order left to right: Observation number, number of dewlap flaps, % of time spent active, body temperature, species, and length of observation period in seconds.
DOI: 10.5258/soton/d1515
title: Dataset for: Trailing-edge noise generation from a flat-plate aerofoil interacting with a prescribed vortex

description: Dataset supporting: Turner, J.M. and Kim, J.W. (2020) Trailing-edge noise generation from a flat-plate aerofoil interacting with a prescribed vortex. Journal of Sound and Vibration.
DOI: 10.6084/m9.figshare.12711695
title: radon hierarchical model inferencedata

description: Result of the "Adding group-level predictors" in https://github.com/pymc-devs/pymc3/blob/master/docs/source/notebooks/multilevel_modeling.ipynb<br>
DOI: 10.6084/m9.figshare.12711695.v1
title: radon hierarchical model inferencedata

description: Result of the "Adding group-level predictors" in https://github.com/pymc-devs/pymc3/blob/master/docs/source/notebooks/multilevel_modeling.ipynb<br>
DOI: 10.6084/m9.figshare.12709985
title: New Again data

description: Journal of a veteran christian school teacher entering the public school system as a first year teacher.
DOI: 10.6084/m9.figshare.12709985.v1
title: New Again data

description: Journal of a veteran christian school teacher entering the public school system as a first year teacher.
DOI: 10.6084/m9.figshare.12709759
title: Caledonian and pre-Caledonian orogenic events in Shetland, Scotland: evidence from garnet Lu-Hf and Sm-Nd geochronology

description: Supplementary data 2: LA-ICP-MS data
DOI: 10.6084/m9.figshare.12709756
title: Caledonian and pre-Caledonian orogenic events in Shetland, Scotland: evidence from garnet Lu-Hf and Sm-Nd geochronology

description: Supplementary data 1: XRF Nd data
DOI: 10.6084/m9.figshare.12709756.v1
title: Caledonian and pre-Caledonian orogenic events in Shetland, Scotland: evidence from garnet Lu-Hf and Sm-Nd geochronology

description: Supplementary data 1: XRF Nd data
DOI: 10.6084/m9.figshare.12709759.v1
title: Caledonian and pre-Caledonian orogenic events in Shetland, Scotland: evidence from garnet Lu-Hf and Sm-Nd geochronology

description: Supplementary data 2: LA-ICP-MS data
DOI: 10.6084/m9.figshare.12709592
title: SI 14: Dataset of observations during the intuitive experiment of long bone breakage

description: Variate observations recorded before and during the experiment. Information about each individual (gender, laterality, age, height, weight, sports practice, bone knowledge) and of each bone broken by series (bone number, laterality). The individual position, the use of an anvil, the technique employed, the marrow quality and quantity (gram) and the difficulty felt by him/her for each bone broken by series.<br>
DOI: 10.6084/m9.figshare.12709550
title: INH_toxicity_datasets

description: datasets related to isoniazid toxicity in liver cells<br>
DOI: 10.5522/04/12709391
title: HD-CSF study mhtt and NfL dataset

description: HD-CSF study mhtt and NfL dataset used for: F. B. Rodrigues, L. M. Byrne, R. Tortelli, E. B. Johnson, P. A. Wijeratne, M. Arridge, E. De Vita, N. Ghazaleh, R. Houghton, H. Furby, D. C. Alexander, S. J. Tabrizi, S. Schobel, R. I. Scahill, A. Heslegrave, H. Zetterberg, E. J. Wild, Longitudinal dynamics of mutant huntingtin and neurofilament light in Huntington's disease: the prospective HD-CSF study. medRxiv, (2020).
DOI: 10.6084/m9.figshare.12709478
title: FailureModes

description: temporal archive, for anonymized submission
DOI: 10.5522/04/12709391.v1
title: HD-CSF study mhtt and NfL dataset

description: HD-CSF study mhtt and NfL dataset used for: F. B. Rodrigues, L. M. Byrne, R. Tortelli, E. B. Johnson, P. A. Wijeratne, M. Arridge, E. De Vita, N. Ghazaleh, R. Houghton, H. Furby, D. C. Alexander, S. J. Tabrizi, S. Schobel, R. I. Scahill, A. Heslegrave, H. Zetterberg, E. J. Wild, Longitudinal dynamics of mutant huntingtin and neurofilament light in Huntington's disease: the prospective HD-CSF study. medRxiv, (2020).
DOI: 10.6084/m9.figshare.12709478.v1
title: FailureModes

description: temporal archive, for anonymized submission
DOI: 10.6084/m9.figshare.12709229
title: Dispersal trade-off datasets

description: Datasets used in the Ecology Letters paper (Manuscript ID: ELE-00394-2020)
DOI: 10.6084/m9.figshare.12707969
title: Waterbird seed-dispersal networks are similarly nested but less modular than those of frugivorous birds, and not driven by functional traits

description: Dataset of the article "Waterbird seed-dispersal networks are similarly nested but less modular than those of frugivorous birds, and not driven by functional traits".<br>We include three datasets:SA1. Network metrics and trait values of waterbirds at four European wetlands.SA2. Network metrics and trait values of plants at four European wetlands.SA3. Network values of 26 published seed-dispersal datasets (4 of waterbirds and 22 of frugívoros birds).<br><br>
DOI: 10.6084/m9.figshare.12708362
title: NE-Asia_NCF_Scatterers

description: The cross-correlations used to retrieve the body-wave from MTZ and scatterers in mid-mantle in Northeast Asia. Find more details in Readme.
DOI: 10.6084/m9.figshare.12707969.v1
title: Waterbird seed-dispersal networks are similarly nested but less modular than those of frugivorous birds, and not driven by functional traits

description: Dataset of the article "Waterbird seed-dispersal networks are similarly nested but less modular than those of frugivorous birds, and not driven by functional traits".<br>We include three datasets:SA1. Network metrics and trait values of waterbirds at four European wetlands.SA2. Network metrics and trait values of plants at four European wetlands.SA3. Network values of 26 published seed-dispersal datasets (4 of waterbirds and 22 of frugívoros birds).<br><br>
DOI: 10.6084/m9.figshare.12708362.v2
title: NE-Asia_NCF_Scatterers

description: The cross-correlations used to retrieve the body-wave from MTZ and scatterers in mid-mantle in Northeast Asia. Find more details in Readme.
DOI: 10.6084/m9.figshare.12707900
title: RT_CA_20170821_RTDATA.txt

description: Ray path calculations for a medium-scale gravity observed on the night of 21-22 August 2017 over São João do Cariri, Brazil.
DOI: 10.17637/rh.12707840
title: UKGEOS pore network models from Glasgow and Sellafield samples

description: <pre>This folder contains files for analysis of 3D micro CT images for the article "Pore Scale Assessment of Subsurface Carbon Storage Potential: Implications for the UK Geoenergy Observatories Project" by Payton, Fellgett, Clark, Chiarella and Hier-Majumder. To create the figures presented in the article run the python script analysis.py Description of data: - overall_GG_SF_poro_perm.csv = porosity and permeability data collected in this study, obtained from measurements on the micro CT images using PerGeos. - Each folder with the prefix 'GG' (Glasgow) contains 2 files: - all_pores.csv = measurements made characterising the pore geometry within the sample using PerGeos on the micro CT images. 'all' indicates both connected and disconnected porosity. - all_throats.csv = measurements made characterising the throat geometry within the sample using PerGeos on the micro CT images. 'all' indicates both connected and disconnected porosity. - Each folder with the prefix 'SF' (Sellafield) contains 4 files: - all_pores.csv (see above) - all_grains.csv (see above) - effective_pores.csv = measurements made characterising the pore geometry within the sample using PerGeos on the micro CT images. 'effective' indicates only connected porosity. - effective_throats.csv = measurements made characterising the throat geometry within the sample using PerGeos on the micro CT images. 'effective' indicates only connected porosity. - The folder 'literature_data' contains the supporting data used to plot the figures in this article which are fully referenced in the article itself. We uses these data as a comparison to our own. - 'Poro_Perm' contains the supporting porosity and permeability measurements used where each CSV file in this folder is named after the original author, referenced in the article. - 'Paul' contains the supporting data from our research group in CSV file format where the file name reflects the reference in our article. Funding London NERC DTP Studentship (NE/L002485/1) British Geological Survey University Funding Initiative (BUFI) CASE studentship </pre>
DOI: 10.6084/m9.figshare.12707900.v1
title: RT_CA_20170821_RTDATA.txt

description: Ray path calculations for a medium-scale gravity observed on the night of 21-22 August 2017 over São João do Cariri, Brazil.
DOI: 10.6084/m9.figshare.12708362.v1
title: NE-Asia_NCF_Scatterers

description: The cross-correlations used to retrieve the body-wave from MTZ and scatterers in mid-mantle in Northeast Asia. Find more details in Readme.