cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14163587
title: neXtProt Data release 2023-09-11

description: neXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data.

Developed between 2009 and 2023 by the CALIPHO group (Computer Analysis and Laboratory Investigation of Proteins of Human Origin) at the University of Geneva and the SIB Swiss Institute of Bioinformatics, neXtProt was designed to help researchers make sense of what all these human proteins do in our bodies by 



Adding more information to the corpus of data on human proteins that is already in Swiss-Prot with data originating from a variety of high-throughput approaches (such as micro-array, antibodies screens, proteomics, interactomics, structural genomics).

Carefully selecting all of these data sets to provide high-quality data.

Organizing the data in such a way that it is possible to seamlessly build powerful queries in the most user-friendly way possible.

Developing software tools ranging from sequence analysis to text and data mining to be integrated in various research environments. These tools will meet the specific needs of both academic and industrial users.
DOI: 10.5281/zenodo.14163588
title: neXtProt Data release 2023-09-11

description: neXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data.

Developed between 2009 and 2023 by the CALIPHO group (Computer Analysis and Laboratory Investigation of Proteins of Human Origin) at the University of Geneva and the SIB Swiss Institute of Bioinformatics, neXtProt was designed to help researchers make sense of what all these human proteins do in our bodies by 



Adding more information to the corpus of data on human proteins that is already in Swiss-Prot with data originating from a variety of high-throughput approaches (such as micro-array, antibodies screens, proteomics, interactomics, structural genomics).

Carefully selecting all of these data sets to provide high-quality data.

Organizing the data in such a way that it is possible to seamlessly build powerful queries in the most user-friendly way possible.

Developing software tools ranging from sequence analysis to text and data mining to be integrated in various research environments. These tools will meet the specific needs of both academic and industrial users.
DOI: 10.5281/zenodo.14356359
title: neXtProt ion channels variants portal

description: This portal provides information about the functional impact of genetic variants and artificially generated mutants. Annotation statements are triplets composed of (1) a subject, which corresponds to the protein variant being annotated; (2) a relation describing how the property is affected, and (3) an object that describes the function, localization, or protein property being tested.
DOI: 10.5281/zenodo.14356360
title: neXtProt ion channels variants portal

description: This portal provides information about the functional impact of genetic variants and artificially generated mutants. Annotation statements are triplets composed of (1) a subject, which corresponds to the protein variant being annotated; (2) a relation describing how the property is affected, and (3) an object that describes the function, localization, or protein property being tested.
DOI: 10.5281/zenodo.14356028
title: neXtProt cancer variants portal

description: This portal provides information about the functional impact of genetic variants and artificially generated mutants in human proteins involved in cancer. Annotation statements are triplets composed of (1) a subject, which corresponds to the protein variant being annotated; (2) a relation describing how the property is affected, and (3) an object that describes the function, localization, or protein property being tested.
DOI: 10.5281/zenodo.14356029
title: neXtProt cancer variants portal

description: This portal provides information about the functional impact of genetic variants and artificially generated mutants in human proteins involved in cancer. Annotation statements are triplets composed of (1) a subject, which corresponds to the protein variant being annotated; (2) a relation describing how the property is affected, and (3) an object that describes the function, localization, or protein property being tested.
DOI: 10.21227/0d7a-dy97
title: DocDewarpHV

description: This dataset contains about 110K distorted document images in Chinese and English. The number of Chinese and English documents is close to 1:1. The resolution of each image is 512*512. The source scanned images come from cddod, CDLA, M6Doc and PubLayNet. Compared with Doc3D, in addition to 3D world coordinates, UV map, 2D backward map (grid coordinates), we also provide horizontal and vertical line annotations that are consistent with the distortion trend of the input image.
DOI: 10.6084/m9.figshare.27024340.v1
title: Meta-Stable State Preceding Shear Zone Instability: Implications for Earthquake-accelerated Landslides and Dynamic Triggering

description: Dataset for paper "Meta-Stable State Preceding Shear Zone Instability: Implications for Earthquake-accelerated Landslides and Dynamic Triggering"
DOI: 10.5281/zenodo.14355851
title: neXtProt protein kinase function portal

description: This portal provides information about the function of proteins. Annotation statements are triplets composed of (1) a subject, which corresponds to a protein being annotated; (2) a relation describing how the property is affected, and (3) an object that describes the function, localization, or protein property being tested.
DOI: 10.5281/zenodo.14355852
title: neXtProt protein kinase function portal

description: This portal provides information about the function of proteins. Annotation statements are triplets composed of (1) a subject, which corresponds to a protein being annotated; (2) a relation describing how the property is affected, and (3) an object that describes the function, localization, or protein property being tested.
DOI: 10.5281/zenodo.13744447
title: (12)-Pereyra2024A-DS0001--0009 – Nine Tribolium castaneum long-term live imaging datasets of embryonic development acquired with light sheet fluorescence microscopy

description: (12)-Pereyra2024A-DS0001--0009 – Nine Tribolium castaneum long-term live imaging datasets of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.5281/zenodo.13744448
title: (12)-Pereyra2024A-DS0001 – Tribolium castaneum ACOS{ATub'H2A/H2B°NB-mRuby} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (12)-Pereyra2024A-DS0001 – Tribolium castaneum ACOS{ATub'H2A/H2B°NB-mRuby} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.5281/zenodo.13767276
title: (12)-Pereyra2024A-DS0001 – Tribolium castaneum ACOS{ATub'H2A/H2B°NB-mRuby} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (12)-Pereyra2024A-DS0001 – Tribolium castaneum ACOS{ATub'H2A/H2B°NB-mRuby} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.5281/zenodo.14288901
title: (12)-Pereyra2024A-DS0001--0009 – Nine Tribolium castaneum long-term live imaging datasets of embryonic development acquired with light sheet fluorescence microscopy

description: (12)-Pereyra2024A-DS0001--0009 – Nine Tribolium castaneum long-term live imaging datasets of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.6084/m9.figshare.28001054
title: A single-cell atlas reveals the tumorigenesis and microenvironment status of primary tracheobronchial tumors

description: rawdata
DOI: 10.6084/m9.figshare.28001054.v1
title: A single-cell atlas reveals the tumorigenesis and microenvironment status of primary tracheobronchial tumors

description: rawdata
DOI: 10.5281/zenodo.14355521
title: neXtProt functional proteome project

description: While knowledge on human proteins has grown by leaps and bounds in recent years with high-throughput experiments and simulations, there are still many proteins lacking any experimentally determined or predicted function. In order to support the community effort initiated by the HUPO C-HPP consortium to complete the human functional proteome, neXtProt has begun to host and contribute protein function predictions.
DOI: 10.5281/zenodo.14355522
title: neXtProt functional proteome project

description: While knowledge on human proteins has grown by leaps and bounds in recent years with high-throughput experiments and simulations, there are still many proteins lacking any experimentally determined or predicted function. In order to support the community effort initiated by the HUPO C-HPP consortium to complete the human functional proteome, neXtProt has begun to host and contribute protein function predictions.
DOI: 10.5281/zenodo.14228554
title: neXtProt archive April 2023
DOI: 10.5281/zenodo.14228555
title: neXtProt archive April 2023
DOI: 10.5281/zenodo.14228508
title: neXtProt archives February-May 2022
DOI: 10.5281/zenodo.14228509
title: neXtProt archives February-May 2022
DOI: 10.5281/zenodo.14228312
title: neXtProt archives August-October 2022
DOI: 10.5281/zenodo.14228313
title: neXtProt archives August-October 2022
DOI: 10.5281/zenodo.14228262
title: neXtProt archives 2021
DOI: 10.5281/zenodo.14228263
title: neXtProt archives 2021
DOI: 10.5281/zenodo.14228204
title: neXtProt archives 2020
DOI: 10.5281/zenodo.14228205
title: neXtProt archives 2020
DOI: 10.5281/zenodo.14228052
title: neXtProt archives 2018-2019
DOI: 10.5281/zenodo.14228053
title: neXtProt archives 2018-2019
DOI: 10.17029/bd9df2d4-25bf-4e1e-89d9-ab1d06252dac
title: Supplemental data for ''Acute ketone monoester ingestion improves cardiac function at rest and during cycling exercise in adults with type 2 diabetes mellitus: a double-blind, placebo controlled, randomized, crossover trial.'

description: Supplemental Figure S1. Circulating troponin-T (A), blood [glucose] (B) and [lactate] (C) at rest, during and after exercise, after Kme and placebo ingestion.

Supplemental Table S1. Cardiac function parameters at rest, during and after exercise for Kme and placebo ingestion
DOI: 10.5281/zenodo.14224775
title: neXtProt archives 2011-2017
DOI: 10.5281/zenodo.14224776
title: neXtProt archives 2011-2017
DOI: 10.6084/m9.figshare.28000517
title: Dataset of Perovskite Optical Fiber Performance Enhancers

description: This is a dataset containing optical fiber performance enhancers. Each column represents a feature variable of perovskite materials. Among them, rA, rB, and rX represent ionic radii, measured in angstroms. Target1 indicates experimentally verified perovskites that enhance sensing performance, while Target0 indicates experimentally known unstable perovskites.
DOI: 10.6084/m9.figshare.28000517.v1
title: POPEdataset.csv

description: 这是一个包含光纤性能增强器的数据集。每列代表钙钛矿材料的一个特征变量。其中，rA、rB 和 rX 代表离子半径，以埃为单位。目标 1 表示经过实验验证的可增强传感性能的钙钛矿，而目标 0 表示实验已知的不稳定钙钛矿。
DOI: 10.15468/dl.bqnzyf
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "TaxonKey is Aromia bungii (Faldermann, 1835)"
 ]
}

 The dataset includes 116 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017827-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwkudt
title: Occurrence Download

description: A dataset containing 1703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is one of (South America, North America)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lagopus muta (Montin, 1781)",
 "Year 1942-2024"
 ]
}

 The dataset includes 1703 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028688-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14459/2024mp1760064
title: Optical single-shot readout of spin qubits in silicon

description: The digital revolution was enabled by nanostructured devices made from silicon. A similar prominence of this material is anticipated in the upcoming quantum era as the unrivalled maturity of silicon nanofabrication offers unique advantages for integration and up-scaling, while its favorable material properties facilitate quantum memories with hour-long coherence. While small spin-qubit registers have exceeded error-correction thresholds, their connection to large quantum computers is an outstanding challenge. To this end, spin qubits with optical interfaces offer key advantages: they can minimize the heat load and give access to modular quantum computing architectures that eliminate cross-talk and offer a large connectivity via room-temperature photon routing. Here, we implement such an efficient spin-photon interface based on erbium dopants in a nanophotonic resonator. We thus demonstrate optical single-shot readout of a spin in silicon whose coherence exceeds the Purcell-enhanced optical lifetime, paving the way for entangling remote spins via photon interference.
DOI: 10.48577/jpl.lgsr3o
title: Prediction of Inorganic Mass Accretion Rates in Coastal Louisiana

description: Prediction of Inorganic Mass Accretion Rates in Coastal Louisiana
DOI: 10.5525/gla.researchdata.1848
title: Quantum-enhanced time-domain spectroscopy
DOI: 10.5281/zenodo.14361460
title: Data for Figures 2-3 and SB-SF in "Assessing indirect biodiversity conservation benefits of fisheries closures in the Gulf of St. Lawrence, Canada"

description: Aggregated data to create Figures 2-3 and SB-SF in PlosOne manuscript "Assessing indirect biodiversity conservation benefits of fisheries closures in the Gulf of St. Lawrence, Canada". 

Note for files: nf = 2050-59; ff = 2090-99
DOI: 10.5281/zenodo.14361461
title: Data for Figures 2-3 and SB-SF in "Assessing indirect biodiversity conservation benefits of fisheries closures in the Gulf of St. Lawrence, Canada"

description: Aggregated data to create Figures 2-3 and SB-SF in PlosOne manuscript "Assessing indirect biodiversity conservation benefits of fisheries closures in the Gulf of St. Lawrence, Canada". 

Note for files: nf = 2050-59; ff = 2090-99
DOI: 10.4121/fb693b92-473f-42f7-8d46-696d3ba8975e
title: Data related to the crossed test for the polarimetric characterization of prism 1 of the modulator

description: This data refers to the polarimetric characterization, at a wavelength of 515 nm, of the first prism of the modulator used in the frame of the PhD thesis "Development of a high-performing spectropolarimeter for space usage". The data set contains images corresponding to the "fit procedure" for retrieving the phase variation and the fast axis orientation inside this wedge. Two types of measurements are presented here: for the specimen situated between aligned linear polarizers and between crossed polarized. For both situations, the two linear polarizers were rotated between 0º and 360º with a step of 1º, and five images were recorded for each orientation. In addition, dark images are provided to assess the noise. Each set of images contains metadata with the precise setup of the camera during the acquisition.
DOI: 10.4121/fb693b92-473f-42f7-8d46-696d3ba8975e.v1
title: Data related to the crossed test for the polarimetric characterization of prism 1 of the modulator

description: This data refers to the polarimetric characterization, at a wavelength of 515 nm, of the first prism of the modulator used in the frame of the PhD thesis "Development of a high-performing spectropolarimeter for space usage". The data set contains images corresponding to the "fit procedure" for retrieving the phase variation and the fast axis orientation inside this wedge. Two types of measurements are presented here: for the specimen situated between aligned linear polarizers and between crossed polarized. For both situations, the two linear polarizers were rotated between 0º and 360º with a step of 1º, and five images were recorded for each orientation. In addition, dark images are provided to assess the noise. Each set of images contains metadata with the precise setup of the camera during the acquisition.
DOI: 10.15468/dl.fku9tw
title: Occurrence Download

description: A dataset containing 693 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Morella inodora (W.Bartram) Small"
 ]
}

 The dataset includes 693 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028690-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92rbea
title: Occurrence Download

description: A dataset containing 37673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((4.7886 43.26916,4.52319 43.32836,4.2639 43.41003,3.94336 43.43657,3.66162 43.30182,3.51666 43.20791,3.3472 43.21607,3.19816 43.05274,3.12058 42.78529,3.1736 42.61577,3.26751 42.48409,3.38083 42.41671,3.38803 42.27079,3.31658 42.13808,3.33285 42.04105,3.56362 41.938,3.74124 41.95638,3.73103 42.22383,3.72491 42.51783,3.89436 42.68116,4.22919 42.80979,4.52115 42.90574,4.82535 42.91799,4.90498 43.10582,4.79269 43.26916,4.7886 43.26916)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Footprint WKT mismatch, Geodetic datum assumed WGS84, Country derived from coordinates, Taxon match higher rank, The taxon ID was not used in backbone matching)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 37673 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028692-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zke6g8
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vespa soror Buysson, 1905)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 297 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028694-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25573/data.28000472.v1
title: SHIP folder 6 of 6

description: Data from the Nancy Foster Ship NF2202, for the OE FY2021 final report. Raw data from onshore the ship contains in this folder. Data from EM2040-Sonar Data
DOI: 10.15468/dl.dgn9z6
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kyrgyzstan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Juglans regia L."
 ]
}

 The dataset includes 42 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028695-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubhc4p
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-85.45697 46.65685,-83.70862 46.65685,-83.70862 47.35557,-85.45697 47.35557,-85.45697 46.65685))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Parmotrema crinitum (Ach.) M.Choisy"
 ]
}

 The dataset includes 26 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028696-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/6cceb45f-e992-4523-a2e2-fe43637148c0
title: A review of serious games for urban water management decisions: current gaps and future directions - supplementary materials

description: The dataset lists serious games on urban water management topics found but excluded from the review paper. It further details how the shortlisted games were mapped to common decision-making phases.
DOI: 10.4121/6cceb45f-e992-4523-a2e2-fe43637148c0.v1
title: A review of serious games for urban water management decisions: current gaps and future directions - supplementary materials

description: The dataset lists serious games on urban water management topics found but excluded from the review paper. It further details how the shortlisted games were mapped to common decision-making phases.
DOI: 10.15468/dl.k59gna
title: Occurrence Download

description: A dataset containing 1313 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Protopterus aethiopicus Heckel, 1851"
 ]
}

 The dataset includes 1313 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028697-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcrnzx
title: Occurrence Download

description: A dataset containing 6661 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventario florístico de familias selectas de dicotiledóneas del estado de Aguascalientes"
 ]
}

 The dataset includes 6661 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028698-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bpmvr6
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is SLV",
 "OccurrenceStatus is Present",
 "TaxonKey is Zea mays L."
 ]
}

 The dataset includes 235 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028700-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g429ty
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mico intermedius (Hershkovitz, 1977)"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028701-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cuz38w
title: Occurrence Download

description: A dataset containing 1557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "TaxonKey is Halictidae",
 "Year 1970-2024"
 ]
}

 The dataset includes 1557 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012767-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9vfdc
title: Occurrence Download

description: A dataset containing 374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "TaxonKey is Lysimachia alfredi Hance"
 ]
}

 The dataset includes 374 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012778-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.