cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1385106.10fu
title: SH1385106.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1385115.10fu
title: SH1385115.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1385116.10fu
title: SH1385116.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.xncgcq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"MEX.6.11_2","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005859-260108223611665/datasets/export for details.
DOI: 10.15156/bio/sh1385118.10fu
title: SH1385118.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1385119.10fu
title: SH1385119.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1385128.10fu
title: SH1385128.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1385129.10fu
title: SH1385129.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.q9fu7h
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dahana Grote, 1875"
 ]
}

 The dataset includes 134 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190529-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8eyvkh
title: Occurrence Download

description: A dataset containing 35561 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamogeton lucens L."
 ]
}

 The dataset includes 35561 records from 500 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093623-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fklz5g
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014212-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pa2wds
title: Occurrence Download

description: A dataset containing 2737 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cycnia tenera Hübner, 1818"
 ]
}

 The dataset includes 2737 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190527-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9sndt
title: Occurrence Download

description: A dataset containing 290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Observation, Machine Observation, Human Observation, Material sample, Material citation, Fossil, Living Specimen, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "TaxonKey is Grammatorcynus bilineatus (Rüppell, 1836)"
 ]
}

 The dataset includes 290 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126929-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uphhj7
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014184-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybqbb1
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020432-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3q57h
title: Occurrence Download

description: A dataset containing 577 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cosmosoma myrodora Dyar, 1907"
 ]
}

 The dataset includes 577 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190523-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwxwk6
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamogeton ×biwaensis Miki"
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093561-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ryupn
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dahana atripennis Grote, 1875"
 ]
}

 The dataset includes 133 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190528-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhzpyf
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamogeton ×attenuatus Hagstr."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093553-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48512/xcv8497372
title: slag sample export log

description: description of all samples of Iron Age slags and other archeometallurgical materials exported in 2021 for XRF and OM analyses from Livingstone Museum collections
DOI: 10.15468/dl.i0rric
title: Occurrence Download

description: A dataset containing 498104091 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Material sample"
 ]
 }
 ]
}

 The dataset includes 498104091 records from 11462 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008863-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.up2s4n
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lysiloma bahamensis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012997-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pkxwbh
title: Occurrence Download

description: A dataset containing 1325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is POL.3_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EN, CR, VU)",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1325 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012996-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15271405
title: Extending the Role of NAC Domain Hydrophobic Residues in αSynuclein: Implications for Seed-Competent Fibril Formation

description: Zenodo Dataset Description 

This dataset provides the raw experimental and computational data supporting the manuscript:"Extending the Role of NAC Domain Hydrophobic Residues in αSynuclein: Implications for Seed-Competent Fibril Formation"

Each file is explicitly linked to the figure(s) it supports, ensuring traceability and reproducibility.

Source Data Files





Source Data File 1 (Figure 1):Raw thioflavin T (ThT) fluorescence kinetics data for NAC35, NAC16, and NAC11 peptides under neutral and variable pH conditions, as presented in Figure 1b, 1e–g.




Source Data File 2 (Figure 2):UV-Vis absorbance data of soluble and insoluble fractions of NAC peptides to evaluate solubility differences, shown in Figure 2.




Source Data File 3 (Figure 3):Aggregation kinetics of αSyn in the presence of preformed fibrils (NAC35, NAC16, NAC11, αSyn), corresponding to Figure 3a.




Source Data File 4 (Figure 4):αSyn aggregation kinetics in the presence of inhibitor peptides (PD, PL, PB), corresponding to Figure 4c.




Source Data File 5 (Figure 5):Biosensor cell seeding assay data including CFP/YFP inclusion counts and FRET-based seeding quantification for total and insoluble fractions, presented in Figure 5c–e.




Source Data File 6 (Figure 6):Aggregation kinetics data for NAC35, NAC16, and NAC11 with and without inhibitors, as shown in Figure 6a-c.




Source Data File 7 (Figure 8):MD simulation data on hydrogen bonding patterns in NAC-only vs. NAC+PB systems, corresponding to Figure 8.




Source Data File 8 (Figure 9):Root mean square deviation (RMSD) and solvent-accessible surface area (SASA) profiles for NAC peptides in the presence and absence of PB inhibitor, supporting Figure 9a–b.




Source Data File 9 (Figure 10):Residue-level contact frequency data between NAC peptides and PB over the simulation time course, shown in Figure 10a–c.



Supplementary Source Files





Source Data File S1 (Figure S2):UV-Vis analysis of NAC peptide fractions, presented in Figure S2.




Source Data File S2 (Figure S3):Raman spectroscopy data confirming β-sheet formation in fibrillar NAC35, NAC16, and NAC11, as presented in Figure S3.




Source Data File S3 (Figure S4):Control ThT fluorescence data for preformed fibrils used in seeded aggregation experiments, shown in Figure S4.
DOI: 10.5281/zenodo.15271406
title: Extending the Role of NAC Domain Hydrophobic Residues in αSynuclein: Implications for Seed-Competent Fibril Formation

description: Zenodo Dataset Description 

This dataset provides the raw experimental and computational data supporting the manuscript:"Extending the Role of NAC Domain Hydrophobic Residues in αSynuclein: Implications for Seed-Competent Fibril Formation"

Each file is explicitly linked to the figure(s) it supports, ensuring traceability and reproducibility.

Source Data Files





Source Data File 1 (Figure 1):Raw thioflavin T (ThT) fluorescence kinetics data for NAC35, NAC16, and NAC11 peptides under neutral and variable pH conditions, as presented in Figure 1b, 1e–g.




Source Data File 2 (Figure 2):UV-Vis absorbance data of soluble and insoluble fractions of NAC peptides to evaluate solubility differences, shown in Figure 2.




Source Data File 3 (Figure 3):Aggregation kinetics of αSyn in the presence of preformed fibrils (NAC35, NAC16, NAC11, αSyn), corresponding to Figure 3a.




Source Data File 4 (Figure 4):αSyn aggregation kinetics in the presence of inhibitor peptides (PD, PL, PB), corresponding to Figure 4c.




Source Data File 5 (Figure 5):Biosensor cell seeding assay data including CFP/YFP inclusion counts and FRET-based seeding quantification for total and insoluble fractions, presented in Figure 5c–e.




Source Data File 6 (Figure 6):Aggregation kinetics data for NAC35, NAC16, and NAC11 with and without inhibitors, as shown in Figure 6a-c.




Source Data File 7 (Figure 8):MD simulation data on hydrogen bonding patterns in NAC-only vs. NAC+PB systems, corresponding to Figure 8.




Source Data File 8 (Figure 9):Root mean square deviation (RMSD) and solvent-accessible surface area (SASA) profiles for NAC peptides in the presence and absence of PB inhibitor, supporting Figure 9a–b.




Source Data File 9 (Figure 10):Residue-level contact frequency data between NAC peptides and PB over the simulation time course, shown in Figure 10a–c.



Supplementary Source Files





Source Data File S1 (Figure S2):UV-Vis analysis of NAC peptide fractions, presented in Figure S2.




Source Data File S2 (Figure S3):Raman spectroscopy data confirming β-sheet formation in fibrillar NAC35, NAC16, and NAC11, as presented in Figure S3.




Source Data File S3 (Figure S4):Control ThT fluorescence data for preformed fibrils used in seeded aggregation experiments, shown in Figure S4.
DOI: 10.3535/jac-6d0-qv5
title: Nassarius sufflatus (A. Gould, 1860)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xff-gxv-ta5
title: Nassarius haldemani (Dunker, 1847)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48505/nims.3310
title: XAFS spectrum of Sodium carbonate

description: This dataset consists of X-ray absorption fine structure (XAFS) spectra at Na K-edge of Sodium carbonate measured at Ritsumeikan-SR BL-10, and is a part of XAFS database (MDR XAFS DB, https://doi.org/10.48505/nims.1447) as a collection of MDR
DOI: 10.3535/07r-sn6-lzc
title: Subulina H. Beck, 1837

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vae-vsb-7ln
title: Vertigo moulinsiana (Dupuy, 1849)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zng-m4a-59f
title: Nassarius albescens (Dunker, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5zy-9ys-dsw
title: Subulina H. Beck, 1837

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/edq-w58-5z1
title: Nassarius teretiusculus (A. Adams, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.48505/nims.3347
title: XAFS spectrum of Potassium chloride

description: This dataset consists of X-ray absorption fine structure (XAFS) spectra at K K-edge of Potassium chloride measured at Ritsumeikan-SR BL-13, and is a part of XAFS database (MDR XAFS DB, https://doi.org/10.48505/nims.1447) as a collection of MDR
DOI: 10.3535/g61-w23-ns3
title: Nassarius pullus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mda-xss-k00
title: Mercenaria mercenaria (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.