cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5249551.v8
title: Contour absent & present .Rdata

description: The datasets (Rdata) for the contour-absent and contour-present conditions in the paper:<br>Van Humbeeck, N., Meghanathan, R. N., Wagemans, J., van Leeuwen, C., Nikolaev, A. R. (2018) Presaccadic EEG activity predicts visual saliency in free-viewing contour integration. Psychophysiology, e13267. https://doi.org/10.1111/psyp.13267<br>
DOI: 10.6084/m9.figshare.5249551.v7
title: Contour absent & present .Rdata

description: The datasets (Rdata) for the contour-absent and contour-present conditions for the paper “Presaccadic EEG activity predicts visual saliency in free-viewing contour integration” by Nathalie Van Humbeeck, Radha Nila Meghanathan, Johan Wagemans, Cees van Leeuwen, Andrey R. Nikolaev
DOI: 10.6084/m9.figshare.5249356.v2
title: Step-wise laser excitation of the 4s<i>n</i>f <sup>3</sup>F Rydberg states of neutral zinc

description: The new experimental results on the effective quantum numbers and term energies of the highly excited odd-parity 4s4d <sup>3</sup>D<sub>1,2,3</sub> →4s<i>n</i>f <sup>3</sup>F<sub>2,3,4</sub> Rydberg transitions of zinc have been presented. The experiment was performed using the three dye lasers simultaneously pumped by the second harmonic (532 nm) of the Q-switched Nd:YAG laser. The new observation includes the 4s<i>n</i>f <sup>3</sup>F<sub>3</sub> (12 ≤<i>n</i> ≤ 50) series excited from the 4s4d <sup>3</sup>D<sub>2</sub> intermediate level. In addition, the 4s<i>n</i>f <sup>3</sup>F<sub>2</sub> (12 ≤<i>n</i> ≤ 28) and 4s<i>n</i>f<sup>3</sup>F<sub>4</sub> (12 ≤<i>n</i> ≤ 33) series are observed from the thermally populated 4s4d <sup>3</sup>D<sub>1,3</sub> fine structure components. The ionization potential of zinc has been determined from the unperturbed 4s<i>n</i>f <sup>3</sup>F<sub>3</sub> series as 75769.31 ± 0.15 cm<sup>−1</sup>, which is in excellent agreement with the previously reported value.
DOI: 10.6084/m9.figshare.5249356.v1
title: Step-Wise Laser Excitation of the 4s<i>n</i>f <sup>3</sup>F Rydberg States of Neutral Zinc

description: The new experimental results on the effective quantum number and term energies of the highly excited odd-parity 4s4d <sup>3</sup>D<sub>1,2,3</sub>→ 4s<i>n</i>f <sup>3</sup>F<sub>2,3,4</sub> Rydberg transitions of zinc have been presented. The experiment was performed using the three dye lasers simultaneously pumped by the second harmonic (532 nm) of the Q-switched Nd: YAG laser. The new observation include the 4s<i>n</i>f <sup>3</sup>F<sub>3</sub> (12 ≤<i>n</i> ≤ 50) series excited from the 4s4d <sup>3</sup>D<sub>2</sub> intermediate level. In addition, the 4s<i>n</i>f <sup>3</sup>F<sub>2</sub> (12 ≤<i>n</i> ≤ 28) and 4s<i>n</i>f<sup>3</sup>F<sub>4</sub> (12 ≤<i>n</i> ≤ 33) series are observed from the thermally populated 4s4d <sup>3</sup>D<sub>1,3</sub> fine structure components. The ionization potential of zinc has been determined from the unperturbed 4s<i>n</i>f <sup>3</sup>F<sub>3</sub> series as 75769.31 ± 0.15 cm<sup>−1</sup>, which is in excellent agreement with the previously reported value.
DOI: 10.6084/m9.figshare.5249203
title: OpenCitations Corpus provenance data of all the responsible agents, archived on 2017-07-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about responsible agents, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5249209
title: Supplementary Material for: Contemporary Antiplatelet Treatment in Acute Coronary Syndrome Patients with Impaired Renal Function Undergoing Percutaneous Coronary Intervention

description: <b><i>Objectives:</i></b> To assess the clinical impact of impaired renal function (IRF), in “real-world” acute coronary syndrome (ACS) patients, receiving clopidogrel, prasugrel, or ticagrelor. <b><i>Methods:</i></b> This was a prospective, observational, multicenter, cohort study of ACS patients undergoing percutaneous coronary interventions (PCI) with IRF (creatinine clearance &lt;60 mL/min by Cockroft-Gault equation), who were recruited into the Greek Antiplatelet Registry (GRAPE). Patients were followed-up until 1 year for major adverse cardiovascular events (MACE; a composite of death, nonfatal myocardial infarction, urgent revascularization, and stroke) and BARC (Bleeding Academic Research Consortium) bleeding. <b><i>Results:</i></b> Out of 2,047 registered patients, there were 344 (16.8%) with IRF. At the 1-year follow-up, MACE occurred in 18.6 and 6.2% of those patients with and without IRF, respectively: adjusted hazard ratio (HR) = 2.13 (95% confidence interval, CI 1.16-3.91), <i>p</i> = 0.02. IRF patients were also at higher risk of death and BARC type ≥2 and ≥3 bleeding: adjusted HR = 3.55 (95% CI 1.73-7.27), <i>p</i> = 0.001; HR = 2.75 (95% CI 1.13-6.68), <i>p</i> = 0.03; and HR = 6.02 (95% CI 2.30-15.77), <i>p</i> &lt; 0.001, respectively. Combined MACE and BARC type ≥2 bleeding occurred in 34.0 and 14.0% of those with and without IRF, respectively: adjusted HR = 2.65 (95% CI 1.36-5.16), <i>p</i> = 0.004. At discharge, clopidogrel was more frequently prescribed in IRF patients (61.0 vs. 33.1%, <i>p</i> &lt; 0.001). <b><i>Conclusions:</i></b> Real-world ACS patients with IRF subjected to PCI demonstrate higher thrombotic and bleeding risks than patients with normal renal function.
DOI: 10.6084/m9.figshare.5249179
title: Supplementary Material for: Chancengleichheit in der ambulanten Therapie: Ein Experiment zur Bereitschaft von niedergelassenen Psychotherapeuten, Patienten mit Schizophrenie zu behandeln

description: Hintergrund: Seit 2014 ist Psychotherapie bei psychotischen Störungen uneingeschränkt indiziert. Patienten mit psychotischen Störungen erhalten jedoch weiterhin selten eine ambulante Psychotherapie. Unklar ist, ob eine höhere Ablehnungsquote durch ambulante Psychotherapeuten dazu beiträgt. In einem Feldexperiment prüften wir, ob Patienten mit psychotischen Störungen auf Therapieplatzsuche häufiger von Therapeuten abgelehnt werden als andere Patientengruppen. Methode: Die Experimentatorin kontaktierte niedergelassene Psychotherapeuten mit dem Schwerpunkt «Verhaltenstherapie» (N = 60) und gab sich entweder als Patientin mit Schizophrenie oder als Patientin mit Depression aus. Wir erfassten die Zu- oder Absage der Therapeuten zu einem Erstgespräch, die voraussichtliche Wartezeit und Vorerfahrungen mit Schizophrenie sowie erwartete Herausforderungen bei der Schizophreniebehandlung. Ergebnisse: Dabei zeigten sich keine statistisch signifikanten Unterschiede hinsichtlich der Zusagen zu einem Erstgespräch (Schizophrenie: 60%; Depression: 53%) und der durchschnittlichen Wartezeit (Schizophrenie: M = 1,6 Monate; Depression: M = 0,8 Monate). Therapeuten, die im Nachgespräch angaben, grundsätzlich keine Patienten mit Schizophrenie zu behandeln, beklagten häufiger das Fehlen spezialisierter Supervisionsangebote und waren eher der Ansicht, Patienten mit psychotischen Störungen seien unzureichend zu rationalem Denken befähigt. Schlussfolgerung: Patienten mit psychotischen Störungen scheinen auf Therapieplatzsuche ebenso häufig ein Erstgesprächsangebot zu erhalten wie andere Patientengruppen. Mögliche Unterschiede in der Wartezeit sollten mit größeren Stichproben getestet werden. Eine spezialisierte Weiterbildung und Supervision könnten das Engagement in der Versorgung dieser Patientengruppe steigern.
DOI: 10.6084/m9.figshare.5249203.v2
title: OpenCitations Corpus provenance data of all the responsible agents, archived on 2017-07-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about responsible agents, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5249203.v1
title: OCC provenance data of all the responsible agents, made on 2017-07-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about responsible agents, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5249158
title: Supplementary Material for: Untargeted DNA-Demethylation Therapy Neither Prevents Nor Attenuates Ischemia-Reperfusion-Induced Renal Fibrosis

description: <b><i>Background:</i></b> Current treatment options for chronic kidney disease (CKD) are limited and their focus is on slowing its progression by addressing comorbidities. Fibrosis, the common histopathological process in CKD, is a major therapeutic research target. In CKD, fibroblasts are terminally activated due to alterations in their DNA-methylation pattern, particularly hypermethylation. Preventing the copying of pathological DNA-methylation patterns in proliferating fibroblasts could be a new effective therapeutic strategy for treating CKD. <b><i>Methods:</i></b> To evaluate the therapeutic effect of short-term treatment with the DNA-methyltransferase (DNMT)-inhibitor decitabine on fibrosis (either developing or already established), male C57Bl/6 mice underwent warm unilateral ischemia-reperfusion injury. Respectively 3 days, 3 and 6 weeks after surgery, decitabine treatment (0.25 mg/kg) was initiated for 10 days after which animals were followed up to 12 weeks after ischemia. The efficacy of therapy on fibrosis was evaluated by <i>collagen I</i> and <i>tgfβ</i> gene expression and histological quantification of collagen I staining. In addition, the effect of decitabine treatment on tubular injury (<i>Kim-1</i>, <i>Ngal</i>), inflammation (<i>TNFa</i>, <i>IL6</i>), DNA-methyltransferases (<i>Dnmt1, 3a, and 3b</i>), and global methylation status was determined. <b><i>Results:</i></b> Following ischemia there was a significant increase in fibrotic, injury, and inflammatory markers as well as an increase of the various <i>dnmts</i>. Although decitabine treatment transiently increased renal injury and had a moderately decreasing effect on dnmt expression and on global DNA-methylation upon immediate treatment, none of the treatment regimens succeeded in preventing, attenuating, or diminishing fibrosis in the long run. <b><i>Conclusion:</i></b> Administration of untargeted nucleoside analogues seems unsuitable as a first-line treatment option in developing or established CKD.
DOI: 10.6084/m9.figshare.5249158.v1
title: Supplementary Material for: Untargeted DNA-Demethylation Therapy Neither Prevents Nor Attenuates Ischemia-Reperfusion-Induced Renal Fibrosis

description: <b><i>Background:</i></b> Current treatment options for chronic kidney disease (CKD) are limited and their focus is on slowing its progression by addressing comorbidities. Fibrosis, the common histopathological process in CKD, is a major therapeutic research target. In CKD, fibroblasts are terminally activated due to alterations in their DNA-methylation pattern, particularly hypermethylation. Preventing the copying of pathological DNA-methylation patterns in proliferating fibroblasts could be a new effective therapeutic strategy for treating CKD. <b><i>Methods:</i></b> To evaluate the therapeutic effect of short-term treatment with the DNA-methyltransferase (DNMT)-inhibitor decitabine on fibrosis (either developing or already established), male C57Bl/6 mice underwent warm unilateral ischemia-reperfusion injury. Respectively 3 days, 3 and 6 weeks after surgery, decitabine treatment (0.25 mg/kg) was initiated for 10 days after which animals were followed up to 12 weeks after ischemia. The efficacy of therapy on fibrosis was evaluated by <i>collagen I</i> and <i>tgfβ</i> gene expression and histological quantification of collagen I staining. In addition, the effect of decitabine treatment on tubular injury (<i>Kim-1</i>, <i>Ngal</i>), inflammation (<i>TNFa</i>, <i>IL6</i>), DNA-methyltransferases (<i>Dnmt1, 3a, and 3b</i>), and global methylation status was determined. <b><i>Results:</i></b> Following ischemia there was a significant increase in fibrotic, injury, and inflammatory markers as well as an increase of the various <i>dnmts</i>. Although decitabine treatment transiently increased renal injury and had a moderately decreasing effect on dnmt expression and on global DNA-methylation upon immediate treatment, none of the treatment regimens succeeded in preventing, attenuating, or diminishing fibrosis in the long run. <b><i>Conclusion:</i></b> Administration of untargeted nucleoside analogues seems unsuitable as a first-line treatment option in developing or established CKD.
DOI: 10.6084/m9.figshare.5249131
title: Plant survey data Kroombit Tops 2014.xlsx

description: Kroombit Tops plant survey data used for the following study: <br>Mason, E.D., Firn, J., Hines, H.B., and A.M. Baker. 2017. Plant diversity and structure describes the presence of a new, threatened Australian marsupial within its highly restricted, post-fire habitat. PLOS ONE.<br>Data collection methodology is detailed in the above paper.
DOI: 10.6084/m9.figshare.5249128
title: Evolution of dislocation density in a hot rolled Zr–2.5Nb alloy with plastic deformation studied by neutron diffraction and transmission electron microscopy

description: The evolution of dislocation density and microstructure of a hot rolled Zr–2.5Nb alloy under compressive plastic strain, at room temperature, was analysed using neutron diffraction and transmission electron microscopy (TEM). The dislocation densities of type 〈<i>a</i>〉, 〈<i>c</i> + <i>a</i>〉 and 〈<i>c</i>〉 dislocations at different plastic strains in the elastic–plastic transition regime and plastic regime have been measured by diffraction line profile analysis (DLPA). TEM microstructure characterization revealed the operation of different slip systems. It has been found that slip of type 〈<i>a</i>〉 dislocations contributed to most of the plastic strain at the early stage of deformation, and strong pyramidal 〈<i>c</i> + <i>a</i>〉 slip did not occur until the deformation was fully plastic. Unambiguous evidence of basal slip occurring at room temperature in Zr is provided. Loading along a plate direction with more basal poles favoured the operation of basal and pyramidal slip. Dislocation features including relative edge:screw character of 〈<i>c</i> + <i>a</i>〉 dislocations are shown to be different under tension and compression loading, providing a mechanistic driver for the previously observed asymmetry in critical resolved shear stress for 〈<i>c</i> + <i>a</i>〉 slip.
DOI: 10.6084/m9.figshare.5249119
title: Flying foxes create extensive seed shadows and enhance germination success of pioneer plant species in deforested Madagascan landscapes

description: Set of data collected in 2009 in Madagascar representing gut retention time and seed dispersal by Pteropus rufus
DOI: 10.6084/m9.figshare.5249131.v1
title: Ground cover data Kroombit 2014.xlsx

description: Kroombit Tops plant survey data used for the following study: <br>Mason, E.D., Firn, J., Hines, H.B., and A.M. Baker. 2017. Plant diversity and structure describes the presence of a new, threatened Australian marsupial within its highly restricted, post-fire habitat. PLOS ONE.<br>Data collection methodology is detailed in the above paper.
DOI: 10.6084/m9.figshare.5249119.v1
title: Flying foxes create extensive seed shadows and enhance germination success of pioneer plant species in deforested Madagascan landscapes

description: Set of data collected in 2009 in Madagascar representing gut retention time and seed dispersal by Pteropus rufus
DOI: 10.6084/m9.figshare.5249068
title: Figure-S6

description: Figure-S6
DOI: 10.17632/bkctm5wy8w.1
title: Comparative proteomic analysis of Fusarium oxysporum f. sp. cubense strains (Foc R1 and Foc TR4) provides better insights into mechanisms of their virulence, habitat adaptation and pathogenesis

description: Fusarium oxysporum f. sp. cubense (Foc), a devastative soil-borne fungal pathogen causing vascular wilt (i.e. Panama disease) which leads to severe crop losses in most of the banana-growing regions of the world. The study aims to compare the proteome of the two pathogenic Foc virulent strains, Race 1 (Foc R1) and tropical race 4 (Foc TR4) that are capable of infecting the Cavendish group of bananas using 2-dimensional (2-D) gel electrophoresis, MALDI-TOF/MS and MS/MS analysis.
DOI: 10.6084/m9.figshare.5249068.v1
title: Figure-S6

description: Figure-S6
DOI: 10.6084/m9.figshare.5249038
title: Evidence for both long-distance dispersal and isolation in the Southern Oceans: molecular phylogeny of <i>Sophora</i> sect <i>Edwardsia</i> (Fabaceae)

description: We examined the phylogenetic relationships within <i>Sophora</i> sect. <i>Edwardsia</i> using DNA sequences from the chloroplast <i>trnQ-5′rps16</i> and <i>trnH<sup>GUG</sup>-psbA</i> intergenic spacers and the nuclear-encoded chloroplast-expressed glutamine synthetase gene. Sequences were analysed with median-joining networks and phylogenetic approaches. Low sequence diversity was detected, which is consistent with past genetic studies of the section. Chloroplast and nuclear sequences are shared across large geographic distances. The New Zealand species did not form a monophyletic group, nor did the species from Chile. However, species on some Pacific Islands (Lord Howe Island, Easter Island, Hawaii and French Polynesia) and Réunion Island in the Indian Ocean appear to have unique chloroplast haplotypes, indicating isolation. The <i>S. chrysophylla</i> chloroplast haplotype derives from the French Polynesian haplotype rather than <i>S. denudata</i> from Réunion Island, with which it shares morphological characters. In the nuclear phylogeny <i>Sophora macrocarpa</i> was sister to the remaining species that were sequenced in the section, a relationship that has been previously suggested from morphological analysis.
DOI: 10.6084/m9.figshare.5249038.v1
title: Evidence for both long-distance dispersal and isolation in the Southern Oceans: molecular phylogeny of <i>Sophora</i> sect <i>Edwardsia</i> (Fabaceae)

description: We examined the phylogenetic relationships within <i>Sophora</i> sect. <i>Edwardsia</i> using DNA sequences from the chloroplast <i>trnQ-5′rps16</i> and <i>trnH<sup>GUG</sup>-psbA</i> intergenic spacers and the nuclear-encoded chloroplast-expressed glutamine synthetase gene. Sequences were analysed with median-joining networks and phylogenetic approaches. Low sequence diversity was detected, which is consistent with past genetic studies of the section. Chloroplast and nuclear sequences are shared across large geographic distances. The New Zealand species did not form a monophyletic group, nor did the species from Chile. However, species on some Pacific Islands (Lord Howe Island, Easter Island, Hawaii and French Polynesia) and Réunion Island in the Indian Ocean appear to have unique chloroplast haplotypes, indicating isolation. The <i>S. chrysophylla</i> chloroplast haplotype derives from the French Polynesian haplotype rather than <i>S. denudata</i> from Réunion Island, with which it shares morphological characters. In the nuclear phylogeny <i>Sophora macrocarpa</i> was sister to the remaining species that were sequenced in the section, a relationship that has been previously suggested from morphological analysis.
DOI: 10.6084/m9.figshare.5248966
title: ambipolar Na3Bi raw data and analysis scripts

description: transport measurements of Na_3Bi thin films grown on SiO_2<br>raw data and scripted analysis/ figure creation using python/ scipy/ matplotlib in support of the written manuscript
DOI: 10.6084/m9.figshare.5248924
title: Differential gene expression analysis using GFOLD

description: The RNA sequencing of C. truncatum samples was carried out and Generalized Fold Change (GFOLD) algorithm was used to study differential gene expression of various samples in absence of replicates. The in vitro samples were compared among each other: APR (appresorial assay) vs. PDA (potato dextrose agar) and APR vs. CZ (Czapeck's medium). In vivo samples of C. annum were compared at 24 and 72 hours post inoculation (hpi) with control samples at 0 hpi.
DOI: 10.6084/m9.figshare.5248927
title: Spatial selection on dispersal causes rapid sex-specific divergence in body mass and metabolic rate (Arnold et al)

description: Complete datasets of traits measured in response to spatial selection for residency and dispersal on red flour beetles (<i>Tribolium castaneum</i>). Keys are provided within the data files.
DOI: 10.6084/m9.figshare.5248945
title: SAR11 Isolate Genomes

description: SAR11 Isolate genomes (in a single FASTA file).
DOI: 10.6084/m9.figshare.5248945.v1
title: SAR11 Isolate Genomes

description: SAR11 Isolate genomes (in a single FASTA file).
DOI: 10.6084/m9.figshare.5248927.v1
title: Spatial selection on dispersal causes rapid sex-specific divergence in body mass and metabolic rate (Arnold et al)

description: Complete datasets of traits measured in response to spatial selection for residency and dispersal on red flour beetles (<i>Tribolium castaneum</i>). Keys are provided within the data files.
DOI: 10.6084/m9.figshare.5248924.v1
title: Differential gene expression analysis using GFOLD

description: The RNA sequencing of C. truncatum samples was carried out and Generalized Fold Change (GFOLD) algorithm was used to study differential gene expression of various samples in absence of replicates. The in vitro samples were compared among each other: APR (appresorial assay) vs. PDA (potato dextrose agar) and APR vs. CZ (Czapeck's medium). In vivo samples of C. annum were compared at 24 and 72 hours post inoculation (hpi) with control samples at 0 hpi.
DOI: 10.17632/6h6nv4d6xk.1
title: Exposure factors through cassava, maize, rice, tomato, and yam diets

description: The study data was collected in the western regions of Ghana where gold mining activities are rampant. The specific cities where where respondents were sampled are Akontombra, Asafo, Bibiani, Bodi, Joaboso, Sefwi Bekwai, and Wiawso. The exposure factors through cassava, maize, rice, tomato, and yam diets were determined using dietary recall survey. The exposure factors were exposure frequency, exposure duration, mass of food and consumers' body weight. The body weight of consumers of consumers were measured using a balance. In all 308 consumers responded positively to the survey. Following US EPA guidance, The @Risk (Palisade, 2018) was used to fit the exposure factors to distribution in MS Excel (Microsoft Office 2016). This data set consists of the minimum, maximum, mode, mean, 5th and 95th percentiles of commonly consumed indigenous diets. The distribution parameters were reported in this dataset.