cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.mb06v
title: Data from: Geographic variation in sex-chromosome differentiation in the common frog (Rana temporaria)

description: In sharp contrast with birds and mammals, sex-determination systems in
 ectothermic vertebrates are often highly dynamic and sometimes
 multifactorial. Both environmental and genetic effects have been
 documented in common frogs (Rana temporaria). One genetic linkage group,
 mapping to the largest pair of chromosomes and harboring the candidate
 sex-determining gene Dmrt1, associates with sex in several populations
 throughout Europe, but association varies both within and among
 populations. Here we show that sex association at this linkage group
 differs among populations along a 1500 km transect across Sweden. Genetic
 differentiation between sexes is strongest (FST = 0.152) in a
 northern-boreal population, where male-specific alleles and heterozygote
 excesses (FIS = -0.418 in males, +0.025 in females) testify to a
 male-heterogametic system and lack of X-Y recombination. In the
 southernmost population (nemoral climate), in contrast, sexes share the
 same alleles at the same frequencies (FST = 0.007 between sexes),
 suggesting unrestricted recombination. Other populations show intermediate
 levels of sex differentiation, with males falling in two categories: some
 cluster with females, while others display male-specific Y haplotypes.
 This polymorphism may result from differences among populations in the
 patterns of X-Y recombination, co-option of an alternative sex-chromosome
 pair, or a mixed sex-determination system where maleness is controlled
 either by genes or by environment depending on populations or families. We
 propose approaches to test among these alternative models, to disentangle
 the effects of climate and phylogeography on the latitudinal trend, and to
 sort out how this polymorphism relates to the ‘sexual races’ described in
 common frogs in the 1930s.
description: Table
 S2Microsatellite genoypes
 at LG2 & LG15 for males and females from six
 populations.Sweden LG2-15 all
 pops-PCAInput file for PCAgen
 v2.0 with all 6 Swedish populations.Sweden LG2-15
 Tvedora-PCAInput file for PCAgen
 v2.0 with the Tvedora population.Sweden LG2-15
 PCAArchive file with input
 files of all 6 populations and a file with the 6 populations pooled
 together, for PCAgen v2.0Sweden LG2-15
 STRUCTUREArchive file with input
 files of all 6 populations and a file with the 6 populations pooled
 together, for Structure v2.3.3Sweden LG2-15
 FSTATArchive file with input
 files of all 6 populations, for Fstat v2.9.3.2
DOI: 10.5061/dryad.g6h52
title: Data from: Crossing to safety: Dispersal, colonization and mate choice in evolutionarily distinct populations of Steller sea lions, Eumetopias jubatus.

description: Population growth typically involves range expansion and establishment of
 new breeding sites, while the opposite occurs during declines. Although
 density-dependence is widely invoked in theoretical studies of emigration
 and colonization in expanding populations, few empirical studies have
 documented the mechanisms. Still fewer have documented the direction and
 mechanisms of individual transfer in declining populations. Here we screen
 large numbers of pups sampled on their natal rookeries for variation in
 mtDNA (n=1,106) and 16 microsatellite loci (n=588) and show that new
 Steller sea lion breeding sites did not follow the typical paradigm and
 were instead colonized by sea lions from both a declining (Endangered)
 population and an increasing population. Dispersing individuals colonized
 rookeries in the distributional hiatus between two evolutionarily distinct
 (st = 0.222, st = 0.053, K=2) metapopulations recently described as
 separate subspecies. Hardy-Weinberg, mixed-stock and relatedness analysis
 revealed levels of interbreeding on the new rookeries that exclude (1)
 assortative mating among eastern and western forms, and (2) inbreeding
 avoidance as primary motivations for dispersal. Positive and negative
 density-dependence is implicated in both cases of individual transfer.
 Migration distance limits, and conspecific attraction and performance
 likely influenced the sequence of rookery colonizations. This study
 demonstrates that resource limitation may trigger an exodus of breeding
 animals from declining populations, with substantial impacts on
 distribution and patterns of genetic variation. It also revealed that this
 event is rare because colonists dispersed across an evolutionary boundary
 suggesting that the causative factors behind recent declines are unusual
 or of larger magnitude than normally occur.
description: GOCC - Steller sea lion
 dataGenetic data for Steller
 sea lions; genotypes at 16 microsatellite loci and haplotypes at mtDNA,
 spatial data, and allelic and haplotypic frequenciesGOCC - stellers 130 uni
 haps - FASTAProvides text sequences
 in FASTA format of all 130 unique Steller sea lion mtDNA haplotypes and
 lists their GenBank accession numbers.
DOI: 10.5061/dryad.897qf4r
title: Data from: Effects of variation in resource acquisition during different stages of the life cycle on life-history traits and trade-offs in a burying beetle

description: Individual variation in resource acquisition should have consequences for
 life-history traits and trade-offs between them because such variation
 determines how many resources can be allocated to different life-history
 functions, such as growth, survival and reproduction. Since resource
 acquisition can vary across an individual’s life cycle, the consequences
 for life-history traits and trade-offs may depend on when during the life
 cycle resources are limited. We tested for differential and/or interactive
 effects of variation in resource acquisition in the burying beetle
 Nicrophorus vespilloides. We designed an experiment in which individuals
 acquired high or low amounts of resources across three stages of the life
 cycle: larval development, prior to breeding and the onset of breeding in
 a fully crossed design. Resource acquisition during larval development and
 prior to breeding affected egg size and offspring survival, respectively.
 Meanwhile, resource acquisition at the onset of breeding affected size and
 number of both eggs and offspring. In addition, there were interactive
 effects between resource acquisition at different stages on egg size and
 offspring survival. However, only when females acquired few resources at
 the onset of breeding was there evidence for a trade-off between offspring
 size and number. Our results demonstrate that individual variation in
 resource acquisition during different stages of the life cycle has
 important consequences for life-history traits but limited effects on
 trade-offs. This suggests that, in species that acquire a fixed-sized
 resource at the onset of breeding, the size of this resource has larger
 effects on life-history trade-offs than resources acquired at earlier
 stages.
description: Data for Richardson
 & Smiseth JEBComma separated
 spreadsheet with data from "Effects of variation in resource
 acquisition during different stages of the life cycle on life-history
 traits and trade-offs in a burying beetle". See ReadMe for
 details.
DOI: 10.5061/dryad.dm67f
title: Data from: Disparid and hybocrinid crinoids (Echinodermata) from the Upper Ordovician (lower Katian) Brechin Lagerstätte of Ontario

description: The Brechin Lagerstätte (Katian, Ordovician) from the Lake Simcoe region
 of Ontario, Canada, contains a diverse array of echinoderms. Here, we
 describe seven disparid and two hybocrinid crinoids (Subclass
 Pentacrinoidea, Infraclass Inadunata), including a new disparid species
 belonging to the Anomalocrinidae (Order Homocrinida). In total, the
 disparids include Anomalocrinus astrictus n. sp.; Cremacrinus
 guttenbergensis Kolata, 1975; Cremacrinus inaequalis Billings, E., 1859;
 Daedalocrinus bellevillensis Billings, W.R., 1883; Eustenocrinus springeri
 Ulrich, 1925; Iocrinus trentonensis Walcott, 1883; and Isotomocrinus
 tenuis Billings, E., 1857b; and the hybocrinids include Hybocrinus tumidus
 Billings, E., 1857a and Hybocystites problematicus Wetherby, 1880.
 Previously known from only the holotype, three additional specimens of E.
 springeri expand our understanding of this unusual crinoid. Nomenclatural
 acts include the following: the recommendation of Warn and Strimple
 (1977), who designated Daedalocrinus kirki as a junior synonym of
 Daedalocrinus bellevillensis is followed; Hybocrinus pristinus Billings,
 E., 1858 is designated a junior synonym of Hybocrinus tumidus; and
 previous decisions are followed herein to retain Hybocystites eldonensis
 (Parks, 1908) as a junior synonym of Hybocystites problematicus. Although
 probably assignable to Anomalocrinus, the aberrant crinoid Glaucocrinus
 falconeri is designated a nomen dubium. Iocrinus similis (Billings, E.,
 1857a) is also designated a nomen dubium.
description: Plate diagrams for the
 crinoid genera discussed in this paperPlate diagrams for
 disparid and hybocrinid crinoids discussed in this paper. (1)
 Eustenocrinus, (2) Daedalocrinus, (3) Cremacrinus, (4) Iocrinus, (5)
 hybocrinids, applicable for both Hybocrinus and Hybocystites, although in
 the latter, ambulacra are recumbent on some radial plates, (6)
 Isotomocrinus, (7) Anomalocrinus. Diagrams modified from Moore (1962); not
 to scale; black filling, radial or superradial plate; horizontal rule,
 infraradial; crosshatching, radianal plate; stippled, other radial
 plates.AusichWrightColeKoniecki-Online
 Supplement.pdf
DOI: 10.15468/dl.fpt9x5
title: Occurrence Download

description: A dataset listing the 5 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, Nepal, China, Viet Nam, Thailand, Bhutan, Pakistan, Myanmar)",
 "OccurrenceStatus is Present",
 "TaxonKey is Axis porcinus"
 ]
}

 The dataset's 5 records were derived from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000691-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.115630
title: Research data supporting "Rapid, interpretable, data-driven models of neural dynamics using Recurrent Mechanistic Models"

description: The data is associated to the PNAS paper "Rapid, interpretable data-driven models of neural dynamics using Recurrent Mechanistic Models" (RMMs), which is freely available on: https://doi.org/10.1073/pnas.2426916122 There are three files containing data used to train a Hodgkin-Huxley RMM, an LP neuron RMM, and a PD neuron RMM. These correspond to Figures 2, 3, and 4 of the pre-print, respectively, as well as other figures in the SI appendix. Each .mat data file corresponds to one continuous recording of the membrane voltage and associated applied current of the neuron in question. For the HH dataset, V1 and I1 are the membrane voltage and applied current of the simulated HH neuron. The HH dataset additionally contains a variable "Temp" containing the trajectories of the ground truth conductances of the HH model over the course of the simulated recording. For the LP-PD experimental dataset, V1 and I1 are the membrane voltage and applied current of the LP neuron, and V2 is the membrane voltage of the PD neuron. For the PD experimental dataset, V1 and I1 are the membrane voltage and applied current of the PD neuron. The data was collected as described in the Methods section of the paper.
DOI: 10.17863/cam.118865
title: Research data supporting: "Electronic Consequences of the Formation of Local Tilting in Halide Perovskites"

description: -Input files INCAR contains simulation settings POSCAR defines initial cell vectors of a unit cell and position of atoms in it POTCAR contains pseudo potentials of elements specified in POSCAR KPOINTS specifies the k-point mesh of Brillouin zone integration -Output files CONTCAR contains optimised atomic structure after relaxation DOSCAR contains density of states (DOS) profiles
DOI: 10.15468/dl.unxqpg
title: Occurrence Download

description: A dataset containing 3058 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Sphaeronycteris toxophyllum, Platyrrhinus umbratus, Lampronycteris brachyotis, Lonchophylla concava, Uroderma magnirostrum, Lophostoma silvicola, Trinycteris nicefori, Saccopteryx canescens, Pteronotus davyi, Glossophaga longirostris, Noctilio albiventris, Myotis nesopolus)"
 ]
}

 The dataset includes 3058 records from 196 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025824-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.13516472.v4
title: AralBasindata.zip

description: Water use and socio-economic data in the Aral Sea basin<br>
DOI: 10.6084/m9.figshare.6853931.v5
title: A database of annual atmospheric acid and nutrient deposition to China’s forests

description: Based on a comprehensive literature review, here I present an updated database for annual acid and nutrient deposition in China’s forests (CFAND 2.0). It includes information from 56 forested sites on the water fluxes of bulk precipitation and throughfall, the concentrations of H<sup>+ </sup>(pH), dissolved inorganic N (NH<sub>4</sub><sup>+</sup>-N and NO<sub>3</sub><sup>-</sup>-N), S, dissolved P, K<sup>+</sup>, Ca<sup>2+</sup> and Mg<sup>2+</sup> in bulk precipitation and throughfall, and the fluxes of dissolved inorganic N, S, dissolved P, K<sup>+</sup>, Ca<sup>2+</sup> and Mg<sup>2+</sup> in bulk deposition and throughfall, as well as geographical information and forest type.
DOI: 10.6084/m9.figshare.24174285.v1
title: A multi-tissue de novo transcriptome assembly of the vulnerable freshwater salmonid <i>Thymallus ligericus </i>

description: Freshwater ecosystems are among the most endangered worldwide. While numerous taxa are on the verge of extinction as a result of global changes and direct/indirect anthropogenic actions, genomic and transcriptomic resources are a key tool to comprehend species' adaptability and serve as the foundation for conservation initiatives. The Loire grayling, Thymallus ligericus, is a freshwater European salmonid endemic to the upper Loire river basin. It comprises fragmented populations dispersed over a small area and has been identified as a vulnerable species. Here, we provide a multi-tissue de novo transcriptome assembly of T. ligericus. The final assembly, with a N50 of 1,221 and BUSCO scores above 94%, is made accessible, along with structural and functional annotations and relative gene expression of the five tissues. This is the first transcriptomic resource for this species, and it will serve as the foundation for future research on a species that is increasingly exposed to environmental stressors.
DOI: 10.6084/m9.figshare.3492722.v1
title: Cirrus HD-OCT repeatability dataset.tif

description: Repeatability dataset comprising OCT (20°x20°; 512x128) images obtained on 25 participants, at two separate imaging sessions, using a Zeiss Cirrus HD-OCT.
DOI: 10.17632/vdmwph6fst
title: Dataset for Short and long term deflection analysis of FRP strengthened RC members

description: The raw and processed data required to reproduce the findings of the manuscript Short and long term deflection analysis of FRP strengthened RC members
DOI: 10.6084/m9.figshare.23998710.v2
title: Dataset and Codes for the paper 'Incremental spatiotemporal flow colocation quotient: a new spatiotemporal association analysis method for geographical flows'

description: This dataset contains the codes and synthetic data used in the paper "Incremental Spatiotemporal Flow Colocation Quotient: A New Spatiotemporal Association Analysis Method for Geographical Flows".
DOI: 10.6084/m9.figshare.27528204.v1
title: Data for article Evidence of Plasmapause Surface Wave in the Plasmaspheric Plume

description: This is the data for article Evidence of Plasmapause Surface Wave in the Plasmaspheric Plume
DOI: 10.6084/m9.figshare.27157017.v1
title: <b>Gender-based employment and entrepreneurship in Africa: an analysis of the mediating role of governance institutions</b>

description: The dataset is used to investigate how different dimensions of governance; economic, institutional, and political affect the impact of entrepreneurship on male and female employment in Africa, using secondary data from a panel of 39 African countries
DOI: 10.6084/m9.figshare.c.3835840_d2.v1
title: Additional file 2: of Genome-wide comparative analysis of putative Pth11-related G protein-coupled receptors in fungi belonging to Pezizomycotina

description: Predicted Pth11-related GPCRs among thirteen fungi belonging to Pezizomycotina. (XLSX 24Â kb)
DOI: 10.17632/8v3cxhtk2r
title: Data for: Bioaccumulation of mercury and selenium in tissues of the mesopelagic fish Pacific hake (Merluccius productus) from the Northern Gulf of California and the risk assessment on human health

description: This "Statistica" software file contains the raw data of mercury in the tissues of the Pacific hake used in the submitted work.
DOI: 10.6084/m9.figshare.24258486.v1
title: Chaperone-mediated autophagy protects against hyperglycemic stress

description: Chaperone-mediated autophagy (CMA) is a major pathway of lysosomal proteolysis critical for cellular homeostasis and metabolism, and whose defects have been associated with several human pathologies. While CMA has been well described in mammals, functional evidence has only recently been documented in fish, opening up new perspectives to tackle this function under a novel angle. Now we propose to explore CMA functions in the rainbow trout (RT, <i>Oncorhynchus mykiss</i>), a fish species recognized as a model organism of glucose intolerance and characterized by the presence of two paralogs of the CMA-limiting factor Lamp2A (lysosomal associated membrane protein 2A). To this end, we validated a fluorescent reporter (KFERQ-PA-mCherry1) previously used to track functional CMA in mammalian cells, in an RT hepatoma-derived cell line (RTH-149). We found that incubation of cells with high-glucose levels (HG, 25 mM) induced translocation of the CMA reporter to lysosomes and/or late endosomes in a KFERQ- and Lamp2A-dependent manner, as well as reduced its half-life compared to the control (5 mM), thus demonstrating increased CMA flux. Furthermore, we observed that activation of CMA upon HG exposure was mediated by generation of mitochondrial reactive oxygen species, and involving the antioxidant transcription factor Nfe2l2/Nrf2 (nfe2 like bZIP transcription factor 2). Finally, we demonstrated that CMA plays an important protective role against HG-induced stress, primarily mediated by one of the two RT Lamp2As. Together, our results provide unequivocal evidence for CMA activity existence in RT and highlight both the role and regulation of CMA during glucose-related metabolic disorders. <b>Abbreviations</b>: AREs: antioxidant response elements; CHC: α-cyano -4-hydroxycinnamic acid; Chr: chromosome; CMA: chaperone-mediated autophagy; CT: control; DMF: dimethyl fumarate; Emi: endosomal microautophagy; HG: high-glucose; HMOX1: heme oxygenase 1; H<sub>2</sub>O<sub>2</sub>: hydrogen peroxide; KFERQ: lysine-phenylalanine-glutamate-arginine-glutamine; LAMP1: lysosomal associated membrane protein 1; LAMP2A: lysosomal associated membrane protein 2A; MCC: Manders’ correlation coefficient; Manders’ correlation coefficient Mo: morpholino oligonucleotide; NAC: N-acetyl cysteine; NFE2L2/NRF2: NFE2 like bZIP transcription factor 2; PA-mCherry: photoactivable mCherry; PCC: Pearson’s correlation coefficient; ROS: reactive oxygen species; RT: rainbow trout; siRNAs: small interfering RNAs; SOD: superoxide dismutase; Tsg101: tumor susceptibility 101; TTFA: 2-thenoyltrifluoroacetone; WGD: whole-genome duplication.
DOI: 10.6084/m9.figshare.29069420.v1
title: <b>Title-Detection method of PPE wearing and small target positioning for offshore operators: The improved YOLOv11 model and targets recognition</b><b>Short Title-Detection method of PPE wearing and small target positioning for offshore operators</b>

description: Focusing on the practical challenges of insufficient samples, incomplete categories, and low detection accuracy (particularly for small targets) in Personal Protective Equipment (PPE) wearing condition monitoring for operators in offshore environments, this research investigates PPE targets detection for offshore operators using an optimized YOLOv11 model. The optimized model integrates the time-frequency features enhancement module (SFEAF) into the model's backbone network, employs a statistical-driven dynamic gating attention module (TSSA) to refine attention weight distribution in the original C2PSA module, and incorporates a Normalized Wasserstein Distance (NWD) loss function. These modifications collectively enhance the model's capability to detect PPE targets for offshore operators. To mitigate missed detection problem of small targets such as earplugs and gloves, a cascaded network of YOLOv11 and YOLOv11-Pose models is proposed for small targets detection. The solution involves extracting human key points through YOLOv11-Pose model, constructing spatial constraint regions via two-point area positioning method, enhancing small target features through localized region cropping and normalization, and performing secondary detection on refined regions using YOLOv11 model. Ablation and comparative experiments validate the optimization method's efficacy, and the superiority of the cascaded network detection is verified through secondary detection experiments on small targets.
DOI: 10.6084/m9.figshare.4609348.v1
title: How Much Code Covered By Tests is Pseudo-Tested?

description: Dataset of the <b>ISSTA 2017 paper by Niedermayr et al.</b><br><br>We analyzed test cases of 19 open-source projects using mutation testing. We determined for each covered method whether at least one test case can detect if the method’s whole logic is removed. We studied method characteristics and relations to test cases to find indicators for covered methods that are pseudo-tested.<br><br>The SQL dump requires a MySQL database (version &gt;= 5.7).<br>
DOI: 10.15468/dl.fb7nuq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((1.2219 37.0382,-0.0352 36.4794,-0.0352 28.8496,8.9648 28.8496,8.9648 37.5879,8.4538 37.4177,7.4601 37.5841,6.845 37.4576,6.4593 37.5936,5.3421 37.2141,4.9133 37.3804,3.8874 37.4256,1.2219 37.0382))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013392-250525065834625/datasets/export for details.
DOI: 10.17632/9xztm4vhc3
title: Supporting information for: Phenotypic and Lipidomic Alterations in Lung Cells Induced by Organophosphate Flame Retardants

description: The supplementary text file includes detailed information on the methods (MS-Dial parameter settings) and figures, presenting lipidomic results at low OPFRs exposure concentrations and the UMAP representation of OPFRs molecular descriptors. 
The supplementary tables file provides results from the partial least squares discriminant analysis (PLS-DA), along with additional information on the lipidomic results.