cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3470210.v1
title: Canopy removal experiment and recovery length

description: Data from two manipulative experiments investigating the effect of different level canopy removal on algal turf invasion in Capraia Island. <b>-RECOVERY LENGTH EXPERIMENT-</b>Datasets named <b>Rec.len_HSRturf_Capraia_2014 </b>and <b>Rec.len_HSRturf_Capraia_2015</b><b> </b>include data on propagation of algal turf for different level of canopy removal in 8 90x30 cm experimental transects. In each transect two region of different quality were produced: a cleared patch (30x30cm), where all erect organisms were removed and a canopy-degraded region (of 60x30cm) which was allocated to the following conditions: 0%, 25%, 50% and 75% of canopy removal. The cleared patch and canopy-degraded region were sampled at the scale of 2 x 2 cm, yielding 675 observations for each transect. Algal turfs cover was assessed twice: after one and two years from the set-up of the experiment (July 2014, July 2015).Datasets named <b>Rec.len_C.amentacea_2014</b> and <b>Rec.len_C.amentacea_2015</b> include data of <i>Cystoseira amentacea</i> cover of cleared patches in and canopy degraded region for each transect. <b>-CANOPY REMOVAL EXPERIMENT-</b>The dataset named <b>Exp.Can.rem_HSRTurf_2015</b> includes data of turf cover for different level of canopy removal (0%, 25%, 50% and 75%). 8 transects of 60 x 30 cm were randomly assigned that to these treatments:0%, 25%, 50% and 75% of canopy removed. Visual estimates of percentage cover of algal turfs was obtained by sampling these transects in July 2015 as described above. Dataset named <b>Exp</b><b>Canrem_</b><b>C.amentacea_2015 </b>include data of <i>Cystoseira amentacea</i> cover for each experimental transect.<b>-R SCRIPTS </b>The R file named <b>Maximum-Likelihood</b> estimation includes the script to conduct the maximum likelihood estimation of Turf-<i>Cystoseira </i>model parameter. The R file named <b>Rec_len_Bootstrap</b> includes the script to compute recovery length metrics (Half-point recovery length (<i>L<sub>half</sub></i>) and the Exponential recovery length (<i>L<sub>exp</sub>) )</i> and the bootstraps standard errors.
DOI: 10.6084/m9.figshare.3470189.v1
title: Cheddar - analysis and visualisation of ecological communities in R

description: Talk and workshop given at 11<sup>th</sup> INTECOL Congress, London, 22<sup>nd</sup> August 2013.<br>
DOI: 10.6084/m9.figshare.3470180
title: Dceember Calendar.png

description: Check to download some calendar templates
DOI: 10.6084/m9.figshare.3470180.v1
title: Dceember Calendar.png

description: Check to download some calendar templates
DOI: 10.6084/m9.figshare.3470177
title: DC Artifact Correction for Arbitrary Phase-Cycling Sequence

description: Dataset for manuscript submitted to PLOS ONE titled "DC Artifact Correction for Arbitrary Phase-Cycling Sequence".
DOI: 10.6084/m9.figshare.3470177.v1
title: DC Artifact Correction for Arbitrary Phase-Cycling Sequence

description: Dataset for manuscript submitted to PLOS ONE titled "DC Artifact Correction for Arbitrary Phase-Cycling Sequence".
DOI: 10.6084/m9.figshare.3470135
title: Iranian Zoroastrian and Iranian Fars genotype data from Broushaki et al. 2016.

description: Iranian Zoroastrian and Iranian Fars genotype data in plink binary format from Broushaki et al. 2016: Early Neolithic Genomes from the Eastern Fertile Crescent. Not for commercial purposes.<br>
DOI: 10.6084/m9.figshare.3470135.v3
title: Iranian Zoroastrian and Iranian Fars genotype data from Broushaki et al. 16

description: Iranian Zoroastrian and Iranian Fars genotype data in plink binary format from Broushaki et al. 2016: Early Neolithic Genomes from the Eastern Fertile Crescent.
DOI: 10.6084/m9.figshare.3470135.v4
title: Iranian Zoroastrian and Iranian Fars genotype data from Broushaki et al. 16

description: Iranian Zoroastrian and Iranian Fars genotype data in plink binary format from Broushaki et al. 2016: Early Neolithic Genomes from the Eastern Fertile Crescent.
DOI: 10.6084/m9.figshare.3470123
title: questionary-49232

description: Cuestionario de preguntas estudio Open Data
DOI: 10.6084/m9.figshare.3470123.v2
title: questionary-49232

description: Cuestionario de preguntas estudio Open Data
DOI: 10.6084/m9.figshare.3470123.v1
title: questionary-49232

description: Cuestionario de preguntas estudio Open Data
DOI: 10.6084/m9.figshare.3470117
title: Raw data for Zhu, Drewes, Melcher: Time for awareness: the influence of temporal properties of the mask on continuous flash suppression effectiveness, PlosOne 2016

description: This is the raw, unprocessed subject data corresponding to Zhu, Drewes, Melcher: Time for awareness: the influence of temporal properties of the mask on continuous flash suppression effectiveness, PlosOne 2016<br>
DOI: 10.6084/m9.figshare.3470117.v2
title: Raw data for Zhu, Drewes, Melcher: Time for awareness: the influence of temporal properties of the mask on continuous flash suppression effectiveness, PlosOne 2016

description: This is the raw, unprocessed subject data corresponding to Zhu, Drewes, Melcher: Time for awareness: the influence of temporal properties of the mask on continuous flash suppression effectiveness, PlosOne 2016<br>
DOI: 10.6084/m9.figshare.3470117.v1
title: ZhuDrewesMelcher-PlosOne2016-Data.zip

description: This is the raw, unprocessed subject data corresponding to Zhu, Drewes, Melcher: Time for awareness: the influence of temporal properties of the mask on continuous flash suppression effectiveness, PlosOne 2016<br>
DOI: 10.6084/m9.figshare.3470114
title: The strategy to survive primary malaria infection: An experimental study on behavioural changes in parasitized birds

description: Malaria is caused by protozoan parasites of the genus <i>Plasmodium</i>. Avian malaria parasites are prevalent worldwide, and they infect the great majority of terrestrial bird species. Malaria is thought to have reduced the populations or even caused the extinction of some endemic bird species in Hawaii. However, fitness effects of the parasite on mainland birds are still poorly understood. Also it is unclear whether we get a full picture about the numbers of diseased wild birds using the method of mistnetting. Here, we evaluate experimentally the behavioural changes of siskins caused by a malaria parasite during predator attack, and evaluate the impact of disease on birds’ activity. These parameters are important in nature for survival. We found that infected birds do not differ in their reaction to aerial predators until they are on terminal stage but markedly reduced their mobility during primary infection. Together with mortality caused by infection, these factors are responsible for the considerable underrepresentation of infected birds in mist nets and traps in wildlife projects. Underestimation of parasite burden might mislead our understanding of the true pathogenicity and disease epidemiology in wildlife. These results should be recognized in studies addressing parasite virulence and demography of birds, particularly when estimating mortality rates in wildlife populations.
DOI: 10.6084/m9.figshare.3470114.v1
title: The strategy to survive primary malaria infection: An experimental study on behavioural changes in parasitized birds

description: Malaria is caused by protozoan parasites of the genus <i>Plasmodium</i>. Avian malaria parasites are prevalent worldwide, and they infect the great majority of terrestrial bird species. Malaria is thought to have reduced the populations or even caused the extinction of some endemic bird species in Hawaii. However, fitness effects of the parasite on mainland birds are still poorly understood. Also it is unclear whether we get a full picture about the numbers of diseased wild birds using the method of mistnetting. Here, we evaluate experimentally the behavioural changes of siskins caused by a malaria parasite during predator attack, and evaluate the impact of disease on birds’ activity. These parameters are important in nature for survival. We found that infected birds do not differ in their reaction to aerial predators until they are on terminal stage but markedly reduced their mobility during primary infection. Together with mortality caused by infection, these factors are responsible for the considerable underrepresentation of infected birds in mist nets and traps in wildlife projects. Underestimation of parasite burden might mislead our understanding of the true pathogenicity and disease epidemiology in wildlife. These results should be recognized in studies addressing parasite virulence and demography of birds, particularly when estimating mortality rates in wildlife populations.
DOI: 10.6084/m9.figshare.3470111
title: Tet-inducible Keratinocytes as A Novel Tool for Assessment of Anti-TNFα Activities

description: Detail method for construction of a Tet-inducible keratinocyte cell model for assessing TNF-α activities is shown in Methods file. Supporting data demonstrating inducible TNF-α in the membrane fraction and secreted into the medium is shown in Figure 1. Data demonstrating that Tet-inducible TNF-α could induce pro-inflammatory cytokines similar to recombinant TNF-α is shown in Figure 2. Data demonstrating that our keratinocytes expressing Tet-inducible TNF-α cell model could be used to assess anti-TNFα activites is shown in Figure 3.
DOI: 10.6084/m9.figshare.3470111.v1
title: Tet-inducible Keratinocytes as A Novel Tool for Assessment of Anti-TNFα Activities

description: Detail method for construction of a Tet-inducible keratinocyte cell model for assessing TNF-α activities is shown in Methods file. Supporting data demonstrating inducible TNF-α in the membrane fraction and secreted into the medium is shown in Figure 1. Data demonstrating that Tet-inducible TNF-α could induce pro-inflammatory cytokines similar to recombinant TNF-α is shown in Figure 2. Data demonstrating that our keratinocytes expressing Tet-inducible TNF-α cell model could be used to assess anti-TNFα activites is shown in Figure 3.
DOI: 10.6084/m9.figshare.3470105
title: DFT study of the reaction between TBD, 4-methyl benzylalcohol, and two molecule of 1-O-methyl-2,3-O-isopropylidene-4,6-O-carbonate-α-ᴅ-mannopyranose (ring-opening polymerization propagation step via a primary alcohol chain)

description: Data to support article: Polymers from Sugars and CO<sub>2</sub>: Synthesis and Polymerization of a ᴅ-Mannose-Based Cyclic Carbonate <br> DOI: 10.6084/m9.figshare.3470105 <br> Authors: Georgina L. Gregory, <sup>[a] [b]</sup> Liliana M. Jenisch,<sup>[a]</sup> Bethan Charles, <sup>[a] [b]</sup> Gabriele Kociok-Köhn<sup>[c] </sup>and Antoine Buchard<sup>[a] </sup>*<sup><br></sup> <sup>[a] Department of Chemistry, University of Bath, Bath BA2 7AY, UK<br>[b] EPSRC Centre for Doctoral Training in Sustainable Chemical Technologies, University of Bath, Bath BA2 7AY, UK<br>[c] Chemical Characterisation and Analysis Facility (CCAF), University of Bath, Bath BA2 7AY, UK</sup>DFT study: - DFT optimized geometries and computed free enthalpies of local minima (intermediates) and local maxima (transition states) were used to investigate the mechanism of the reaction between TBD, 4-methylbenzyl alcohol and 2 molecule of D-mannose based monomer<b> 1 </b>(1-O-methyl-2,3-O-isopropylidene-4,6-O-carbonate-α-ᴅ-mannopyranose)<b><sub> </sub></b>to account for the propagation step of ring-opening polymerization<b>, </b>via a primary alcohol chain intermediate.<b><sub><br></sub></b> Protocols: <br>rwB97XD/6-311++G(d,p)/6-31+G(d)cpcm=dichloromethane/T=298.15K<br> Content: - Gaussian09 rev D.01 output files- ROP_propagation from a primary alcohol.pdf, illustrating the calculations made and summarizing the free enthalpies computed.
DOI: 10.6084/m9.figshare.3470105.v1
title: DFT study of the reaction between TBD, 4-methyl benzylalcohol, and two molecule of 1-O-methyl-2,3-O-isopropylidene-4,6-O-carbonate-α-ᴅ-mannopyranose (ring-opening polymerization propagation step via a primary alcohol chain)

description: Data to support article: Polymers from Sugars and CO<sub>2</sub>: Synthesis and Polymerization of a ᴅ-Mannose-Based Cyclic Carbonate <br> DOI: 10.6084/m9.figshare.3470105 <br> Authors: Georgina L. Gregory, <sup>[a] [b]</sup> Liliana M. Jenisch,<sup>[a]</sup> Bethan Charles, <sup>[a] [b]</sup> Gabriele Kociok-Köhn<sup>[c] </sup>and Antoine Buchard<sup>[a] </sup>*<sup><br></sup> <sup>[a] Department of Chemistry, University of Bath, Bath BA2 7AY, UK<br>[b] EPSRC Centre for Doctoral Training in Sustainable Chemical Technologies, University of Bath, Bath BA2 7AY, UK<br>[c] Chemical Characterisation and Analysis Facility (CCAF), University of Bath, Bath BA2 7AY, UK</sup>DFT study: - DFT optimized geometries and computed free enthalpies of local minima (intermediates) and local maxima (transition states) were used to investigate the mechanism of the reaction between TBD, 4-methylbenzyl alcohol and 2 molecule of D-mannose based monomer<b> 1 </b>(1-O-methyl-2,3-O-isopropylidene-4,6-O-carbonate-α-ᴅ-mannopyranose)<b><sub> </sub></b>to account for the propagation step of ring-opening polymerization<b>, </b>via a primary alcohol chain intermediate.<b><sub><br></sub></b> Protocols: <br>rwB97XD/6-311++G(d,p)/6-31+G(d)cpcm=dichloromethane/T=298.15K<br> Content: - Gaussian09 rev D.01 output files- ROP_propagation from a primary alcohol.pdf, illustrating the calculations made and summarizing the free enthalpies computed.
DOI: 10.6084/m9.figshare.3470102
title: Data of Mitomycin C-polylactic acid controlled-release film prevents epidural scar hyperplasia after laminectomy by inducing fibroblasts autophagy and regulating expression of miRNAs .zip

description: Mitomycin C-polylactic acid controlled-release film prevents epidural scar hyperplasia after laminectomy by inducing fibroblasts autophagy and regulating expression of miRNAs
DOI: 10.6084/m9.figshare.3470102.v1
title: Data of Mitomycin C-polylactic acid controlled-release film prevents epidural scar hyperplasia after laminectomy by inducing fibroblasts autophagy and regulating expression of miRNAs .zip

description: Mitomycin C-polylactic acid controlled-release film prevents epidural scar hyperplasia after laminectomy by inducing fibroblasts autophagy and regulating expression of miRNAs
DOI: 10.6084/m9.figshare.3470099
title: DRGFP+APEsh/WT dataset (07022016)

description: 1. BSK_MINUS 2. SCE_MINUS3. SCE_APEsh_MINUS4. SCE_APEsh+WT_MINUS5. BSK_PLUS 6. SCE_PLUS7. SCE_APEsh_PLUS8. SCE_APEsh+WT_PLUSReference_DRGFP_PLUSReference_DRGFP_MINUSWB_APEFACS_BSKFACS_SCEFACS_SCE+APEshFACS_SCE+APEwt
DOI: 10.6084/m9.figshare.3470099.v2
title: DRGFP+APEsh/WT dataset (07022016)

description: 1. BSK_MINUS 2. SCE_MINUS3. SCE_APEsh_MINUS4. SCE_APEsh+WT_MINUS5. BSK_PLUS 6. SCE_PLUS7. SCE_APEsh_PLUS8. SCE_APEsh+WT_PLUSReference_DRGFP_PLUSReference_DRGFP_MINUSWB_APEFACS_BSKFACS_SCEFACS_SCE+APEshFACS_SCE+APEwt
DOI: 10.6084/m9.figshare.3470099.v1
title: DRGFP+APEsh/WT dataset (07022016)

description: 1. BSK_MINUS 2. SCE_MINUS3. SCE_APEsh_MINUS4. SCE_APEsh+WT_MINUS5. BSK_PLUS 6. SCE_PLUS7. SCE_APEsh_PLUS8. SCE_APEsh+WT_PLUSReference_DRGFP_PLUSReference_DRGFP_MINUSWB_APEFACS_BSKFACS_SCEFACS_SCE+APEshFACS_SCE+APEwt
DOI: 10.6084/m9.figshare.3470084
title: TMS learning

description: Four files in mat formatPreLearning_Contra --&gt; Fig 2 ABPreLearning_Ipsi --&gt; Fig 2 CDPostLearning_Contra --&gt; Fig 3 ABPostLearning_Ipsi --&gt; Fig 3 CD
DOI: 10.6084/m9.figshare.3470084.v2
title: TMS learning

description: Four files in mat formatPreLearning_Contra --&gt; Fig 2 ABPreLearning_Ipsi --&gt; Fig 2 CDPostLearning_Contra --&gt; Fig 3 ABPostLearning_Ipsi --&gt; Fig 3 CD
DOI: 10.6084/m9.figshare.3470084.v1
title: PreLearning_Contra.mat

description: Data for Fig 2 ABPreLearning_Contra
DOI: 10.5281/zenodo.48067
title: Model Of Striatum Medium Spiny Neurons

description: This is a subcellular signaling kinetic model of the striatal medium spiny neuron (msn) by Nair et al., (2015). It simulates the dopamine and acetylcholine dependent activation of cAMP/PKA in the dopamine type 1 receptor positive msn of the direct pathway. The full model description can be found in the BioModels database (https://www.ebi.ac.uk/biomodels-main/ Model id: MODEL1502200000).
description: {"references": ["doi: 10.1523/JNEUROSCI.0730-15.2015"]}
DOI: 10.15468/52zoge
title: A new Permagrionidae from the Middle Permian of the South of France (Odonatoptera: Protozygoptera)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fate, Caitlin, Lapeyrie, Jean, Nel, Andre (2013): A new Permagrionidae from the Middle Permian of the South of France (Odonatoptera: Protozygoptera). Zootaxa 3702 (4): 397-400, DOI: http://dx.doi.org/10.11646/zootaxa.3702.4.8
DOI: 10.15468/3iv3qw
title: Two new subspecies of the leaf-tailed gecko Phyllurus ossa (Lacertilia: Carphodactylidae) from mid-eastern Queensland, Australia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Couper, Patrick, Hoskin, Conrad J. (2013): Two new subspecies of the leaf-tailed gecko Phyllurus ossa (Lacertilia: Carphodactylidae) from mid-eastern Queensland, Australia. Zootaxa 3664 (4): 537-553, DOI: http://dx.doi.org/10.11646/zootaxa.3664.4.7
DOI: 10.17632/4676n2pdrf.3
title: The functional subdivision of the visual brain: Is there a real illusion effect on action? A multi-lab replication study (data for Cortex RR)

description: Data and analyses for the paper 'The functional subdivision of the visual brain: Is there a real illusion effect on action? A multi-lab replication study', published as a Registered Report in Cortex. Authors: Karl K. Kopiske, Nicola Bruno, Constanze Hesse, Thomas Schenk, Volker H. Franz ABSTRACT - It has often been suggested that visual illusions affect perception but not actions such as grasping, as predicted by the "two-visual-systems" hypothesis of Milner & Goodale (1995, The Visual Brain in Action, MIT press). However, at least for the Ebbinghaus illusion, relevant studies seem to reveal a consistent illusion effect on grasping (Franz & Gegenfurtner, 2008. Grasping visual illusions: Consistent data and no dissociation. Cognitive Neuropsychology). Two interpretations are possible: either grasping is not immune to illusions (arguing against dissociable processing mechanisms for vision-for-perception and vision-for-action), or some other factors modulate grasping in ways that mimic a vision-for perception effect in actions. It has been suggested that one such factor may be obstacle avoidance (Haffenden Schiff & Goodale, 2001. The dissociation between perception and action in the Ebbinghaus illusion: Nonillusory effects of pictorial cues on grasp. Current Biology, 11, 177-181). In four different labs (total N=144), we conducted an exact replication of previous studies suggesting obstacle avoidance mechanisms, implementing conditions that tested grasping as well as multiple perceptual tasks. This replication was supplemented by additional conditions to obtain more conclusive results. Our results confirm that grasping is affected by the Ebbinghaus illusion and demonstrate that this effect cannot be explained by obstacle avoidance.
DOI: 10.4119/unibi/2698354
title: Supplementary Material for "Browsing RNA Structures by Interactive Sonification"

description: This paper presents a new interactive sonification technique to browse ribonucleic acid secondary structures using a combined auditory and visual interface. Despite the existence of several optimization criteria for searching an optimal structure within the numerous possible structures of an RNA sequence, it is still necessary to manually inspect a huge number of the resulting structures in detail. We describe briefly the background of RNA structure representation and typical search scenarios. Then we discuss the audio-visual browser in detail, with a special focus on the sound design, data-to-sound mapping and interactive aspects. The sonifications we propose turn RNA structures into auditory timbre gestalts according to the shape classes they belong to. Various research-relevant phenomena become clearly audible such as transitions among shape classes and different free energies of selected folds. Both can be simultaneously assessed in an interface that allows for an integrated audio-visual perception.
DOI: 10.4119/unibi/2698536
title: Supplementary Material for "Interpreting EEG by voice: Vocal EEG Sonification"

description: The paper introduces an experimental procedure to evaluate the utility of vocal-sonification (auditory representations) of EEG data as a means for physicians to recognize and differentiate different brain states. We conducted an experiment where listeners judged pairwise similiarity between sound examples for 12 examples from 4 groups. The darker the value in the shown matrix, the more similar the examples are perceived. The matrix plot should have a block diagonal shape if the display allows perfect discrimination. The apparent block structure suggests that sonification is indeed efficient for this purpose. We furthermore present a interface to record vocal sketches (imitations) of sonifications to check how good users are to use their own vocal tract to point to characteristic patterns in the sonifications. As sound examples we here present 2 vocal sonifications of absence EEG and 1 sonifications of artefact EEG. ### Absence 1: The original sonification is: + [Absence_1 (mp3, 56K)](https://pub.uni-bielefeld.de/download/2698536/2698537) The sound that two subjects created who were asked to imitate the sound with their own vocal tract: + [Absence_1_a (mp3, 24K)](https://pub.uni-bielefeld.de/download/2698536/2698538) + [Absence_1_t (mp3, 24K)](https://pub.uni-bielefeld.de/download/2698536/2698539) ### Absence 2: The original sonification is: + [Absence_2 (mp3, 56K)](https://pub.uni-bielefeld.de/download/2698536/2698540) The sound that two subjects created who were asked to imitate the sound with their own vocal tract: + [Absence_2_a (mp3, 32K)](https://pub.uni-bielefeld.de/download/2698536/2698541) + [Absence_2_g (mp3, 24K)](https://pub.uni-bielefeld.de/download/2698536/2698542) ### Artefact example: The original sonification is: + [Artefact_3 (mp3, 56K)](https://pub.uni-bielefeld.de/download/2698536/2698543) The sound that two subjects created who were asked to imitate the sound with their own vocal tract: + [Artefact_3_a (mp3, 24K)](https://pub.uni-bielefeld.de/download/2698536/2698544) + [Artefact_3_t (mp3, 32K)](https://pub.uni-bielefeld.de/download/2698536/2698545) We have not evaluated in how far the imitated versions induce the same similiarity structure, that is, if imitation is a valid new form of communicating EEG patterns.
DOI: 10.4119/unibi/2699967
title: Supplementary Material for "Sonification for Sonic Interaction Design"

description: This paper advocates a closer connection between the emerging field of sonic interaction design and that of sonification. We firstly discuss the issue of information conveyance by sound in everyday interactions, including HCI and product interaction design. Existing sonification techniques are examined, to identify principles for displaying information by sound during interaction, focusing particularly on Model-Based Sonification. We present two implementations: the Data Solids Sonification Model for exploratory data analysis, and the Shoogle system for mobile phone interactions. Both exemplify aspects of sonic interactions that connect well to the users' intuitions. Finally, the Sonic Interaction Atlas is introduced, a prototype community application that allows for the archival and organization of information in existing sonic interaction design cases, and for the generation of new scenarios during early-stage design research by aiding exploration of the suitability of different sonic interaction models. It is hoped that the Atlas may be useful for revealing the possibilities of physically-based sonic interaction methods that may connect well to users' intuition and innate capacities.