cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17882/101039
title: Hydroacoustic catalogs along the Southwest Indian Ridge between 2016 and 2018

description: Mid-ocean ridges represent divergent plate boundaries characterized by the interaction of volcanic and tectonic processes, resulting in the creation of a new ocean floor. These complex interactions lead to the occurrence of numerous low-magnitude earthquakes (M less than 4), which often go unnoticed by terrestrial seismic networks due to the rapid attenuation of seismic waves within the Earth’s crust. But, these earthquakes generate T-waves with frequencies of up to 60 Hz in the water column from the conversion of seismic waves into low-frequency hydroacoustic waves at the seafloor which propagate over large distances (several thousands of km) with little attenuation through an acoustic waveguide known as the sound fixing and ranging (SOFAR) channel. The OHASISBIO and IMS-CTBTO networks of hydrophones, designed to record these T-waves in the Indian Ocean, encompass three mid-ocean ridges with contrasted spreading rates: the ultraslow spreading Southwest Indian Ridge (SWIR; 14 mm/yr), the slow spreading Central Indian Ridge (CIR; 40 mm/yr), and the intermediate spreading Southeast Indian Ridge (SEIR; 60 mm/yr) which converge at Rodrigues Triple Junction (RTJ). In this depository, we have put hydroacoustic catalogs of three swarms detected along the Southwest Indian Ridge between 2016 and 2018. These swarms are located near the Novara transofrm fault, melville transofrm fault and at segment 4
DOI: 10.17882/46124
title: Antarctic blue whales in the southern Indian Ocean: a multi-year and multi-site database of Z-call detections

description: As part of the OHASISBIO project, since January 2010, a network of 6 to 8 autonomous hydrophones is deployed in the southern Indian Ocean (Fig. 1) to monitor the low-frequency sounds (0-120 Hz) carried by the ocean. These acoustic data provide unique information on the seasonal presence of several species and sub-species of large baleen whales. Among them, the Antarctic blue whale (Balaenoptera musculus intermedia) has a distinct call between 18 and 26 Hz, easily recognizable by its Z-shape in a time-frequency diagram. We designed an automatic Z-detector (Socheleau et al., 2015) to cense the Z-calls in our multi-year, multi-site acoustic dataset. The resulting database consists of several metrics: time of detection of each individual call, the ambient noise level between 40 and 60 Hz, and the ratio between the whale chorus between 25 and 27 Hz over the noise level between 30 and 33 Hz. The rationale for these metrics and the interpretation of the results can be found in the paper by Leroy et al. (2016; see reference below). Figure 1: Acoustic records available for Antarctic blue whale Z-call detections. © E Leroy / CNRS-U.Brest LGO Figure 2: Acoustic records available for Antarctic blue whale Z-call detections. © E Leroy / CNRS-U.Brest LGO
DOI: 10.5281/zenodo.14834192
title: Hydroacoustic catalogs along the Southeast Indian Ridge

description: We present the hydroacoustic event catalogs associated with seven seismic swarms between July 2012 and December 2020 along the Southeast Indian Ridge. These swarms are recorded by a network of 6 to 8 autonomous underwater hydrophones of OHASISBIO network and three permanent hydroacoustic stations maintained by International Monitoring System of Comprehensive Nulcear Test-Ban-Treaty organization. Out of seven swarms, one swarm occurs along the transform boundary at 26°21’S, two are centered on the 28°S segment, three on the 29°S segment, and one along the J3 segment, which is an overlapping spreading center south of the SPA plateau.

The file description is given in the Data_description_SEIR.docx
DOI: 10.15468/dl.qhgb4g
title: Occurrence Download

description: A dataset containing 45577 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trifolium angustifolium L."
 ]
}

 The dataset includes 45577 records from 721 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001498-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4dsb6
title: Occurrence Download

description: A dataset containing 4449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.2_1",
 "TaxonKey is Tamiasciurus hudsonicus (Erxleben, 1777)"
 ]
}

 The dataset includes 4449 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001500-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.engu9q
title: Occurrence Download

description: A dataset containing 31322 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((104.90033 41.49893,106.59834 39.42875,106.66812 38.31225,107.41245 37.05619,108.69178 36.42816,110.36652 36.70729,110.66891 37.89357,110.64565 38.42856,111.06434 37.5214,114.01841 37.80053,119.56153 39.07515,119.346 42.43741,120.16501 41.92014,123.7428 42.78225,123.31175 44.29096,119.77706 47.09285,106.84529 43.81679,104.90033 41.49893))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae",
 "Year 2000-2024"
 ]
}

 The dataset includes 31322 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001499-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2qfsm
title: Occurrence Download

description: A dataset containing 246073 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations, Observation.org, Nature data from around the World)",
 "Year 2000-2001"
 ]
}

 The dataset includes 246073 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001495-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28720480.v1
title: Additional file 9 of 2D visco-elasto-plastic subduction models in the presence of a high density and viscosity continental block: a case study for the slab geometry beneath the Kii Peninsula, southwest Japan

description: Additional file 9.
DOI: 10.6084/m9.figshare.28720480
title: Additional file 9 of 2D visco-elasto-plastic subduction models in the presence of a high density and viscosity continental block: a case study for the slab geometry beneath the Kii Peninsula, southwest Japan

description: Additional file 9.
DOI: 10.6084/m9.figshare.28720496
title: Additional file 1 of Validating obstetric triage systems, what are we really measuring - A modified Delphi process introducing outcome measures for obstetric emergency triage systems

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28720496.v1
title: Additional file 1 of Validating obstetric triage systems, what are we really measuring - A modified Delphi process introducing outcome measures for obstetric emergency triage systems

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28720507
title: Additional file 2 of Parental kynurenine 3-monooxygenase genotype in mice directs sex-specific behavioral outcomes in offspring

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28720507.v1
title: Additional file 2 of Parental kynurenine 3-monooxygenase genotype in mice directs sex-specific behavioral outcomes in offspring

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28720508
title: Additional file 1 of Caffeic acid and chlorogenic acid mediate the ADPN-AMPK-PPARα pathway to improve fatty liver and production performance in laying hens

description: Additional file 1: Table S1 Statistics of transcriptome sequencing. Table S2–S4 Differentially expressed genes between CA25 group, CA100 group, CGA1000 group and CON group. Table S5–S7 Top 10–15 GO terms of DEGs between CA25 group, CA100 group, CGA1000 group and CON group. Table S8–S10 Top 20 KEGG pathways of DEGs between CA25 group, CA100 group, CGA1000 group and CON group. Table S11–S13 Differentially expressed proteins between CA25 group, CA100 group, CGA1000 group and CON group. Table S14–S16 Top 10–15 GO terms of differentially expressed proteins between CA25 group, CA100 group, CGA1000 group and CON group. Table S17–S19 KEGG enrichment analysis of DEPs between CA25 group, CA100 group, CGA1000 group and CON group. Table S20 GO terms related to lipid metabolism by Gene Set Enrichment Analysis. Table S21 KEGG pathways related to lipid metabolism by Gene Set Enrichment Analysis.
DOI: 10.6084/m9.figshare.28720508.v1
title: Additional file 1 of Caffeic acid and chlorogenic acid mediate the ADPN-AMPK-PPARα pathway to improve fatty liver and production performance in laying hens

description: Additional file 1: Table S1 Statistics of transcriptome sequencing. Table S2–S4 Differentially expressed genes between CA25 group, CA100 group, CGA1000 group and CON group. Table S5–S7 Top 10–15 GO terms of DEGs between CA25 group, CA100 group, CGA1000 group and CON group. Table S8–S10 Top 20 KEGG pathways of DEGs between CA25 group, CA100 group, CGA1000 group and CON group. Table S11–S13 Differentially expressed proteins between CA25 group, CA100 group, CGA1000 group and CON group. Table S14–S16 Top 10–15 GO terms of differentially expressed proteins between CA25 group, CA100 group, CGA1000 group and CON group. Table S17–S19 KEGG enrichment analysis of DEPs between CA25 group, CA100 group, CGA1000 group and CON group. Table S20 GO terms related to lipid metabolism by Gene Set Enrichment Analysis. Table S21 KEGG pathways related to lipid metabolism by Gene Set Enrichment Analysis.
DOI: 10.6084/m9.figshare.28720513
title: Additional file 1 of Comparative genomic analysis reveals the difference of NLR immune receptors between anthracnose-resistant and susceptible sorghum cultivars

description: Additional file 1. Table S1 Assessment of anthracnose resistance in the Sorghum Association Panel inoculated in the greenhouse. Table S2 Physicochemical characteristics of the NLR proteins in BTx623 and GJH1. Table S3 Rice homologous genes corresponding to the 302 sorghum NLR genes. Table S4 Orthologous genes identified between BTx623 and GJH1. Table S5 Expression profiles of NLR genes in BTx623 and GJH1 during C. sublineola infection. Table S6 Temporal co-expression analysis of sorghum gene expression during C. sublineola infection, red color indicates the NLR genes. Table S7 The primer sequences of 12 key NLR genes used for RT-qPCR analysis.
DOI: 10.6084/m9.figshare.28720513.v1
title: Additional file 1 of Comparative genomic analysis reveals the difference of NLR immune receptors between anthracnose-resistant and susceptible sorghum cultivars

description: Additional file 1. Table S1 Assessment of anthracnose resistance in the Sorghum Association Panel inoculated in the greenhouse. Table S2 Physicochemical characteristics of the NLR proteins in BTx623 and GJH1. Table S3 Rice homologous genes corresponding to the 302 sorghum NLR genes. Table S4 Orthologous genes identified between BTx623 and GJH1. Table S5 Expression profiles of NLR genes in BTx623 and GJH1 during C. sublineola infection. Table S6 Temporal co-expression analysis of sorghum gene expression during C. sublineola infection, red color indicates the NLR genes. Table S7 The primer sequences of 12 key NLR genes used for RT-qPCR analysis.
DOI: 10.6084/m9.figshare.28720337
title: Data and code from "Phase transitions and dimensional cross-over in layered confined solids"

description: <pre>This file contains the data and software used in the paper "Phase Transitions and Dimensional Cross-Over in Layered Confined Solids," published in [Proceedings of the National Academy of Sciences of the United States of America (PNAS)]. It includes the training dataset for constructing machine learning models, the source code of GPUMD with the implemented confinement potential for performing molecular dynamics simulations, and the MAGUS package used to predict confined crystal phases.<br></pre>
DOI: 10.6084/m9.figshare.28720519
title: Additional file 1 of A novel mechanism for A-to-I RNA-edited CYP1A1 in promoting cancer progression in NSCLC

description: Supplementary Material 1: Fig. S1. (A) Sequence analysis of CYP1A1 in edited regions from different lung cancer cell lines, such as A549, H1299, H460, 95C, and 95D. PCR fragments were obtained from cDNA (mRNA) using primers described in “Methods.” Samples were subjected to Sanger sequencing. (B) The CYP1A1 editing level of each cell line. Fig. S2. (A) Western blots of CYP1A1 overexpression in A549 and H1299 cells. Flag tag was used to quantify the CYP1A1 protein expression level, and GAPDH was used as loading control. (Control: control vector, WT: CYP1A1 wild-type, Edited: CYP1A1 edited-type). (B) Changes in CYP1A1 editing level after transfection with different types of CYP1A1 by Sanger sequencing. Three independent biological replicates were carried out in this experiment. One-way ANOVA with Tukey’s test as post hoc test was used to assess the difference; *** &lt; 0.001. Fig. S3 .(A) Sequence chromatograms was detected in gDNA samples of A549 and A549I462V cells. (B) Assessment of the proliferation of A549 and A549I462V cells by EdU assays. (C) Wound healing of A549 and A549I462V cells. Scale bars, 550 μm. (D) The invasion and migration abilities of A549 and A549I462V cells. Scale bars, 210 μm. Standard deviation (SD) of three independent experiments. One-way ANOVA with Tukey’s test as post hoc test was used to assess the difference; **, p &lt; 0.01; ***, p &lt; 0.001. Fig. S4. (A, B) Images of HE and IHC staining by anti-PD-L1 antibody in orthotopic tumors (n = 5 per group). Scale bars: 50 μm. (C) H-score of Ki67 in orthotopic tumors, standard deviation (SD) of three independent experiments. One-way ANOVA with Tukey’s test as post hoc test was used to assess the difference. **, p &lt; 0.01.
DOI: 10.6084/m9.figshare.28720519.v1
title: Additional file 1 of A novel mechanism for A-to-I RNA-edited CYP1A1 in promoting cancer progression in NSCLC

description: Supplementary Material 1: Fig. S1. (A) Sequence analysis of CYP1A1 in edited regions from different lung cancer cell lines, such as A549, H1299, H460, 95C, and 95D. PCR fragments were obtained from cDNA (mRNA) using primers described in “Methods.” Samples were subjected to Sanger sequencing. (B) The CYP1A1 editing level of each cell line. Fig. S2. (A) Western blots of CYP1A1 overexpression in A549 and H1299 cells. Flag tag was used to quantify the CYP1A1 protein expression level, and GAPDH was used as loading control. (Control: control vector, WT: CYP1A1 wild-type, Edited: CYP1A1 edited-type). (B) Changes in CYP1A1 editing level after transfection with different types of CYP1A1 by Sanger sequencing. Three independent biological replicates were carried out in this experiment. One-way ANOVA with Tukey’s test as post hoc test was used to assess the difference; *** &lt; 0.001. Fig. S3 .(A) Sequence chromatograms was detected in gDNA samples of A549 and A549I462V cells. (B) Assessment of the proliferation of A549 and A549I462V cells by EdU assays. (C) Wound healing of A549 and A549I462V cells. Scale bars, 550 μm. (D) The invasion and migration abilities of A549 and A549I462V cells. Scale bars, 210 μm. Standard deviation (SD) of three independent experiments. One-way ANOVA with Tukey’s test as post hoc test was used to assess the difference; **, p &lt; 0.01; ***, p &lt; 0.001. Fig. S4. (A, B) Images of HE and IHC staining by anti-PD-L1 antibody in orthotopic tumors (n = 5 per group). Scale bars: 50 μm. (C) H-score of Ki67 in orthotopic tumors, standard deviation (SD) of three independent experiments. One-way ANOVA with Tukey’s test as post hoc test was used to assess the difference. **, p &lt; 0.01.
DOI: 10.6084/m9.figshare.28720523
title: Additional file 1 of Retand LTR-retrotransposons in plants: a long way from pol to 3’LTR

description: Additional file 1. Species and genome assembly accession numbers used. Taxonomic information is retrieved from The Plant Tree of Life.
DOI: 10.6084/m9.figshare.28720529
title: Additional file 3 of Retand LTR-retrotransposons in plants: a long way from pol to 3’LTR

description: Additional file 3. Recently inserted Retand elements found.
DOI: 10.6084/m9.figshare.28720529.v1
title: Additional file 3 of Retand LTR-retrotransposons in plants: a long way from pol to 3’LTR

description: Additional file 3. Recently inserted Retand elements found.
DOI: 10.6084/m9.figshare.28720543
title: Additional file 3 of Factors influencing vaccine hesitancy toward non-covid vaccines in South Asia: a systematic review

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.28720543.v1
title: Additional file 3 of Factors influencing vaccine hesitancy toward non-covid vaccines in South Asia: a systematic review

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.28720546
title: Additional file 4 of Factors influencing vaccine hesitancy toward non-covid vaccines in South Asia: a systematic review

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.28720546.v1
title: Additional file 4 of Factors influencing vaccine hesitancy toward non-covid vaccines in South Asia: a systematic review

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.28720564
title: Additional file 1 of Hippo-vgll3 signaling may contribute to sex differences in Atlantic salmon maturation age via contrasting adipose dynamics

description: Additional file1 (XLSX 27 KB) Supplementary File 1: Information about custom-designed gene probes on NanoString panel
DOI: 10.6084/m9.figshare.28720564.v1
title: Additional file 1 of Hippo-vgll3 signaling may contribute to sex differences in Atlantic salmon maturation age via contrasting adipose dynamics

description: Additional file1 (XLSX 27 KB) Supplementary File 1: Information about custom-designed gene probes on NanoString panel
DOI: 10.6084/m9.figshare.28720567
title: Additional file 2 of Hippo-vgll3 signaling may contribute to sex differences in Atlantic salmon maturation age via contrasting adipose dynamics

description: Additional file2 (XLSX 42 KB) Supplementary File 2: Expression data and statistical analysis
DOI: 10.6084/m9.figshare.28720567.v1
title: Additional file 2 of Hippo-vgll3 signaling may contribute to sex differences in Atlantic salmon maturation age via contrasting adipose dynamics

description: Additional file2 (XLSX 42 KB) Supplementary File 2: Expression data and statistical analysis
DOI: 10.6084/m9.figshare.28720576
title: Additional file 1 of Combining treatment effects from mixed populations in meta-analysis: a review of methods

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28720576.v1
title: Additional file 1 of Combining treatment effects from mixed populations in meta-analysis: a review of methods

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28720606
title: Additional file 2 of Methylome-wide association analyses of lipids and modifying effects of behavioral factors in diverse race and ethnicity participants

description: Supplementary material 2.
DOI: 10.6084/m9.figshare.28720606.v1
title: Additional file 2 of Methylome-wide association analyses of lipids and modifying effects of behavioral factors in diverse race and ethnicity participants

description: Supplementary material 2.
DOI: 10.6084/m9.figshare.28720649
title: Additional file 1 of o8G-modified circKIAA1797 promotes lung cancer development by inhibiting cuproptosis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28720649.v1
title: Additional file 1 of o8G-modified circKIAA1797 promotes lung cancer development by inhibiting cuproptosis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28720652
title: Additional file 2 of o8G-modified circKIAA1797 promotes lung cancer development by inhibiting cuproptosis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28720652.v1
title: Additional file 2 of o8G-modified circKIAA1797 promotes lung cancer development by inhibiting cuproptosis

description: Supplementary Material 2
DOI: 10.34740/kaggle/dsv/11258256
title: Michelin Guide Restaurants
DOI: 10.15468/dl.7nrqa8
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-105.32401051136046 20.55781515597109,-105.18020675177812 20.55781515597109,-105.18020675177812 20.701618915553432,-105.32401051136046 20.701618915553432,-105.32401051136046 20.55781515597109))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphinema dinema (Péron & Lesueur, 1810)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001502-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ymdyhz
title: Occurrence Download

description: A dataset containing 31420353 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muscicapidae"
 ]
}

 The dataset includes 31420353 records from 8540 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001491-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjxje7
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amaranthus albus L.",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is 1993"
 ]
}

 The dataset includes 24 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046121-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chyxtm
title: Occurrence Download

description: A dataset containing 7867 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ephedra distachya L."
 ]
}

 The dataset includes 7867 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139862-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkr85v
title: Occurrence Download

description: A dataset containing 487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 14.7573915538513",
 "DecimalLongitude is less than 14.7604511070357",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 487 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017281-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39hmq7
title: Occurrence Download

description: A dataset containing 682059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-70 -35,-44 -35,-44 -6,-70 -6,-70 -35))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset includes 682059 records from 879 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0142969-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.