cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24139609.v1
title: Spatiotemporal Clustering with Neyman-Scott Processes via Connections to Bayesian Nonparametric Mixture Models

description: Neyman-Scott processes (NSPs) are point process models that generate clusters of points in time or space. They are natural models for a wide range of phenomena, ranging from neural spike trains to document streams. The clustering property is achieved via a doubly stochastic formulation: first, a set of latent events is drawn from a Poisson process; then, each latent event generates a set of observed data points according to another Poisson process. This construction is similar to Bayesian nonparametric mixture models like the Dirichlet process mixture model (DPMM) in that the number of latent events (i.e., clusters) is a random variable, but the point process formulation makes the NSP especially well suited to modeling spatiotemporal data. While many specialized algorithms have been developed for DPMMs, comparatively fewer works have focused on inference in NSPs. Here, we present novel connections between NSPs and DPMMs, with the key link being a third class of Bayesian mixture models called mixture of finite mixture models (MFMMs). Leveraging this connection, we adapt the standard collapsed Gibbs sampling algorithm for DPMMs to enable scalable Bayesian inference on NSP models. We demonstrate the potential of Neyman-Scott processes on a variety of applications including sequence detection in neural spike trains and event detection in document streams. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.19945330
title: A novel fluorescence sensor for the detection of chloride ion in artificial sweat and environmental water with nitrogen-doped graphene quantum dots

description: A new fluorescent detection route for chloride ion was designed with Nitrogen-doped graphene quantum dots (N-GQDs), which were prepared by a traditional hydrothermal method with citric acid as carbon source and urea as nitrogen source. The prepared N-GQDs solution was light yellow, and the freeze-dried solid was black. It emitted blue light under ultraviolet light. Meanwhile, The N-GQDs were characterized by TEM, XRD, UV-Vis and fluorescence, the results indicated that the N-GQDs had good dispersibility, photostability and excitation independent emission fluorescence. After addition of Ag+ solution, Ag+ combined to the surface functional groups of N-GQDs, resulting in an obvious quenching of the fluorescence intensity of N-GQDs. Nevertheless, the fluorescence intensity recovered significantly with the addition of Cl- to the N-GQDs/Ag+ system, this was because of AgCl was formed due to the “soft hard acid base principle”. The change of fluorescence intensity had a linear response to the chloride ion concentration in the range of 8.5-300 μmol L-1, with a detection limit (LOD) of 0.1 μmol L-1. To authenticate the application, the proposed method has been successfully used for quantitative analysis of chloride ion in real samples, including artificial sweat and environmental water.
DOI: 10.6084/m9.figshare.19945330.v1
title: A novel fluorescence sensor for the detection of chloride ion in artificial sweat and environmental water with nitrogen-doped graphene quantum dots

description: A new fluorescent detection route for chloride ion was designed with Nitrogen-doped graphene quantum dots (N-GQDs), which were prepared by a traditional hydrothermal method with citric acid as carbon source and urea as nitrogen source. The prepared N-GQDs solution was light yellow, and the freeze-dried solid was black. It emitted blue light under ultraviolet light. Meanwhile, The N-GQDs were characterized by TEM, XRD, UV-Vis and fluorescence, the results indicated that the N-GQDs had good dispersibility, photostability and excitation independent emission fluorescence. After addition of Ag+ solution, Ag+ combined to the surface functional groups of N-GQDs, resulting in an obvious quenching of the fluorescence intensity of N-GQDs. Nevertheless, the fluorescence intensity recovered significantly with the addition of Cl- to the N-GQDs/Ag+ system, this was because of AgCl was formed due to the “soft hard acid base principle”. The change of fluorescence intensity had a linear response to the chloride ion concentration in the range of 8.5-300 μmol L-1, with a detection limit (LOD) of 0.1 μmol L-1. To authenticate the application, the proposed method has been successfully used for quantitative analysis of chloride ion in real samples, including artificial sweat and environmental water.
DOI: 10.6084/m9.figshare.14702478
title: Additional file 10 of Genetic analysis of sinonasal undifferentiated carcinoma discovers recurrent SWI/SNF alterations and a novel PGAP3-SRPK1 fusion gene

description: Additional file 10: Supplemental Table 7. Single Nucleotide Variants (SNV) Analysis - SNUC samples.
DOI: 10.6084/m9.figshare.14702478.v1
title: Additional file 10 of Genetic analysis of sinonasal undifferentiated carcinoma discovers recurrent SWI/SNF alterations and a novel PGAP3-SRPK1 fusion gene

description: Additional file 10: Supplemental Table 7. Single Nucleotide Variants (SNV) Analysis - SNUC samples.
DOI: 10.6084/m9.figshare.14702481
title: Additional file 11 of Genetic analysis of sinonasal undifferentiated carcinoma discovers recurrent SWI/SNF alterations and a novel PGAP3-SRPK1 fusion gene

description: Additional file 11: Supplemental Table 8. INDELs Annotation - SNUC samples.
DOI: 10.6084/m9.figshare.14702481.v1
title: Additional file 11 of Genetic analysis of sinonasal undifferentiated carcinoma discovers recurrent SWI/SNF alterations and a novel PGAP3-SRPK1 fusion gene

description: Additional file 11: Supplemental Table 8. INDELs Annotation - SNUC samples.
DOI: 10.5061/dryad.47vd6/1
title: OdomEtal2017_BehavEcol_TroupialBehaviorData

description: Singing and duetting behavior data for Venezuelan Troupials (Icterus icterus) from Puerto Rico used in Odom et al. 2017 published in Behavioral Ecology. The data are of initiation and answering behavior, including variables that predict initiation and answering and subsequent behaviors following initiation and answering.
DOI: 10.5061/dryad.4b7q9/1
title: CDD_HTRlnRNAseq_data
DOI: 10.5061/dryad.501ps/1
title: Felid mammalian prey over present-natural range

description: “Felid mammalian prey over present-natural range” is a dataset listing all the mammals that occur in each extant and recently extinct felid’s present-natural range. It also records an estimate of the importance as a prey species of each mammal to each felid.
DOI: 10.5061/dryad.576m2/1
title: Data sets for figures

description: The file contains three tables which list the single datapoints, means, standard errors and samples sizes that underlie the graphs shown in the paper. The first table contains the data of the cell numbers, the cell areas and the quantitation of the investigated molecules by immunofluorescence. It refers to figures 4-7 and 10. The second table contains the data of the qualitative rating of the cytoskeletal architecture in figure 8. The third table lists the metabolomics data which are shown in figures 9 and 10.
DOI: 10.5061/dryad.70057/1
title: Raw data

description: Raw data
DOI: 10.5061/dryad.70057/2
title: fit population dynamics

description: R code
DOI: 10.5061/dryad.70057/3
title: R code output

description: R code output
DOI: 10.5061/dryad.78084/1
title: Soil porperties

description: Soil chemical analysis (soil extractable and microbial N + soil and microbial 15N) and soil microclimate (soil temperature and moisture) at the heavily and lightly grazed sites
DOI: 10.5061/dryad.78084/2
title: Plant properties

description: Plant chemical analysis (d13C, d15N, C and N content), plant biomass and mycorrhizal colonization at the heavily and lightly grazed sites. The studies plant species were Betula nana, Carex bigelowii, Deschampsia flexuosa, Empetrum hermaphroditum and Vaccinium myrtillus
DOI: 10.5061/dryad.78084/3
title: Dung properties

description: Reindeer ung chemical analysis (d13C, d15N, C and N content)
DOI: 10.5061/dryad.cd13v/4
title: FranzEtAl-2017-SupplementaryMaterials-S4

description: SUPPLEMENTARY MATERIALS S4. – Java Archive file (.jar) needed to translate the clingo solver output into the corresponding GraphViz visualizations.
DOI: 10.5061/dryad.cd13v/5
title: FranzEtAl-2017-SupplementaryMaterials-S5

description: SUPPLEMENTARY MATERIALS S5. – Collated set of GraphViz visualizations (transformed into .pdf) for the 20 nomenclatural taxon use case.
DOI: 10.5061/dryad.cd13v/6
title: FranzEtAl-2017-SupplementaryMaterials-S6

description: SUPPLEMENTARY MATERIALS S6. – Set of 36 Euler/X input data files for the respective alignments (summarized in Table 3). Each file is saved is saved in .txt format and contains annotations and instructions for run commands to yield the alignments and input/output visualizations. The corresponding Euler/X .pdf input visualizations are also provided.
DOI: 10.5061/dryad.cd13v/7
title: FranzEtAl-2017-SupplementaryMaterials-S7

description: SUPPLEMENTARY MATERIALS S7. – Set of 36 Euler/X toolkit output Maximally Informative Relations (MIR) for the input data files provided in the Supplementary Materials S6. Each output file is saved in .csv format.
DOI: 10.5061/dryad.cd13v/8
title: FranzEtAl-2017-SupplementaryMaterials-S8

description: SUPPLEMENTARY MATERIALS S8. – Set of 36 Euler/X output alignment visualizations (.pdf) for the input data files provided in the Supplementary Materials S6.
DOI: 10.5061/dryad.cn55b/1
title: Sr:Ca data

description: Strontium trace element data (Sr:Ca) from ocean perch otoliths for each discrete monthly time period extracted from laser ablation ICP-MS data. These data are used in the univariate mixed modeling analysis for the response variable of Sr:Ca.  IDCode: unique identifier for each fish. Age.years.cap: age of the fish in years at date of capture. Age.month.cap: age of the fish in months at date of capture. Month.code.cap: month code for the date of capture, e.g. 75 = Dec 1996. FishID: = IDCode. SrCa: value of the Sr:Ca ratio for that discrete monthly time period (μmol/mol) extracted from the laser ablation ICP-MS data. Month: a code designating the specific month and year of each monthly resolved increment (i.e. 75 = Dec 1996, 76 = Jan 1997, etc.). Age: age when each monthly increment was formed (total months). fMonth = Month (as factor).
DOI: 10.5061/dryad.cn55b/2
title: Na:Ca data

description: Sodium trace element data (Na:Ca) from ocean perch otoliths for each discrete monthly time period extracted from laser ablation ICP-MS data. These data are used in the univariate mixed modeling analysis for the response variable of Na:Ca.  IDCode: unique identifier for each fish. Age.years.cap: age of the fish in years at date of capture. Age.month.cap: age of the fish in months at date of capture. Month.code.cap: month code for the date of capture, e.g. 75 = Dec 1996. FishID: = IDCode. NaCa: value of the Na:Ca ratio for that discrete monthly time period (μmol/mol) extracted from the laser ablation ICP-MS data. Month: a code designating the specific month and year of each monthly resolved increment (i.e. 75 = Dec 1996, 76 = Jan 1997, etc.). Age: age when each monthly increment was formed (total months). fMonth = Month (as factor).
DOI: 10.5061/dryad.cn55b/3
title: Mg:Ca data

description: Magnesium trace element data (Mg:Ca) from ocean perch otoliths for each discrete monthly time period extracted from laser ablation ICP-MS data. These data are used in the univariate mixed modeling analysis for the response variable of Mg:Ca.  IDCode: unique identifier for each fish. Age.years.cap: age of the fish in years at date of capture. Age.month.cap: age of the fish in months at date of capture. Month.code.cap: month code for the date of capture, e.g. 75 = Dec 1996. FishID: = IDCode. MgCa: value of the Mg:Ca ratio for that discrete monthly time period (μmol/mol) extracted from the laser ablation ICP-MS data. Month: a code designating the specific month and year of each monthly resolved increment (i.e. 75 = Dec 1996, 76 = Jan 1997, etc.). Age: age when each monthly increment was formed (total months). fMonth = Month (as factor).
DOI: 10.5061/dryad.cn55b/4
title: Ba:Ca data

description: Barium trace element data (Ba:Ca) from ocean perch otoliths for each discrete monthly time period extracted from laser ablation ICP-MS data. These data are used in the univariate mixed modeling analysis for the response variable of Ba:Ca.  IDCode: unique identifier for each fish. Age.years.cap: age of the fish in years at date of capture. Age.month.cap: age of the fish in months at date of capture. Month.code.cap: month code for the date of capture, e.g. 75 = Dec 1996. FishID: = IDCode. BaCa: value of the Ba:Ca ratio for that discrete monthly time period (μmol/mol) extracted from the laser ablation ICP-MS data. Month: a code designating the specific month and year of each monthly resolved increment (i.e. 75 = Dec 1996, 76 = Jan 1997, etc.). Age: age when each monthly increment was formed (total months). fMonth = Month (as factor).
DOI: 10.5061/dryad.cn55b/5
title: Li:Ca data

description: Lithium trace element data (Li:Ca) from ocean perch otoliths for each discrete monthly time period extracted from laser ablation ICP-MS data. These data are used in the univariate mixed modeling analysis for the response variable of Li:Ca.  IDCode: unique identifier for each fish. Age.years.cap: age of the fish in years at date of capture. Age.month.cap: age of the fish in months at date of capture. Month.code.cap: month code for the date of capture, e.g. 75 = Dec 1996. FishID: = IDCode. LiCa: value of the Li:Ca ratio for that discrete monthly time period (μmol/mol) extracted from the laser ablation ICP-MS data. Month: a code designating the specific month and year of each monthly resolved increment (i.e. 75 = Dec 1996, 76 = Jan 1997, etc.). Age: age when each monthly increment was formed (total months). fMonth = Month (as factor).
DOI: 10.5061/dryad.cn55b/6
title: Growth increment data

description: Growth increment measurements from ocean perch otoliths for each discrete monthly time period. These data are used in the univariate mixed modeling analysis for the response variable of Growth.  IDCode: unique identifier for each fish. Age.years.cap: age of the fish in years at date of capture. Age.month.cap: age of the fish in months at date of capture. Month.code.cap: month code for the date of capture, e.g. 75 = Dec 1996. FishID: = IDCode. Growth: measured value of the growth increment for a discrete monthly time period (μm). Month: a code designating the specific month and year of each monthly resolved increment (i.e. 75 = Dec 1996, 76 = Jan 1997, etc.). Age: age when each monthly increment was formed (total months). fMonth = Month (as factor).
DOI: 10.5061/dryad.cn55b/7
title: Environmental data

description: Environmental (extrinsic) variables used in the univariate mixed modeling analyses to partition monthly variation of the response variables (Na:Ca, Sr:Ca, Mg:Ca, Ba:Ca, Li:Ca or Growth) between intrinsic and extrinsic drivers. Month: A code designating the specific month and year of each monthly resolved increment (i.e. 75 = Dec 1996, 76 = Jan 1997, etc.). BonneyUI: Monthly upwelling index for the Bonney Coast region of southern Australia (See Figure 2 and Table 1 for details).  BottomTemp: monthly mean bottom temperature (C) for Bonney upwelling region (See Table 1 for details). Chl-a: levels of chlorophyll a (mg/m3) in the Bonney upwelling region (See Table 1 for details).
DOI: 10.5061/dryad.dk894/4
title: Backscatter scanning electron microscope image of the pre-myostracal layer nacre.

description: Backscatter SEM image of the pre-myostracal layer nacre highlighting the nacre layers.
DOI: 10.5061/dryad.gr6dq/1
title: Dam traits

description: Data for mothers' size, time to parturition, brood size
DOI: 10.5061/dryad.gr6dq/2
title: Male offspring sperm traits

description: Male offspring sperm data, including CASA parameters, sperm counts, age tested and dates of birth
DOI: 10.5061/dryad.gr6dq/3
title: Sire sperm data

description: CASA (sperm motility) and sperm viability of the males assigned to high and low quantity diet treatments. Sperm from these males were artificially inseminated into the females.
DOI: 10.5061/dryad.gr6dq/4
title: Offspring body size at 1 WEEK

description: Offspring size data for 7 day old offspring. The mothers' body size (standard length) is also included (used as covariate in analysis).
DOI: 10.5061/dryad.gr6dq/5
title: Offspring body size 4 MONTHS

description: Offspring size data taken from four month old offspring. Offspring sex is recorded (used as factor in analysis).
DOI: 10.5061/dryad.k0c40/1
title: AGEs_online

description: Main clinical data related with subjects included in our study.
DOI: 10.5061/dryad.nm38g/1
title: Pascoal et al. 2017 (morphometric data)

description: Wing morphometric data includes relative warps 1-3 plus mirror and harp surface areas. Data from validations run on a subset of samples are also included. "Unique identifier" cross-references each sample to the CHC analysis in [Pascoal et al. (2016) Sexual selection and population divergence I. The influence of socially flexible cuticular hydrocarbon expression in male field crickets (Teleogryllus oceanicus). Evolution 10:82-97.] "N/A" indicates the n = 13 samples excluded from morphometric analysis as described in the present manuscript.
DOI: 10.5061/dryad.p2k02/1
title: Pepino_et_al_Original_Data
DOI: 10.5061/dryad.pf150/1
title: allPengLocsWk1

description: GPS locations for penguins tracked from Montague Island, October 2015
DOI: 10.5061/dryad.pf150/2
title: allAccelWk1

description: Accelerometry data for penguins tracked in September/October 2015 from Montague Island, NSW, Australia
DOI: 10.5061/dryad.pf150/3
title: aggregations

description: Characteristics of potential forage fish aggregations detected around Montague Island, Australia in Sep/Oct 2016. Aggregations were identified from EK80 70KHz acoustic data using Echoview's 'schools detection' algorithm.
DOI: 10.5061/dryad.q3h85/13
title: TPC2016-00768-LSBR1_Supplemental_Data_Set_13

description: Supplemental Data 13. The peptide identification data for each time point for peptides at T=5 days in the spiked in 15N reference experiment
DOI: 10.5061/dryad.tp846/1
title: Prey occurrences in the diet of Bulwer´s petrel

description: Presence/absence matrix of prey in the diet of Bulweria bulwerii
DOI: 10.5061/dryad.tp846/2
title: RCodes_Influence of the moon

description: RCodes testing the influence of the moon at different sites, years and with the interaction of cloud cover
DOI: 10.5061/dryad.tp846/3
title: Specimens identified morphologically

description: Specimens with a positive morphological identification
DOI: 10.5061/dryad.tp846/4
title: Tree file of cephalopods

description: RAxML Tree used for taxonomic assignment of 16SrRNA sequences of cephalopods
DOI: 10.5061/dryad.tp846/5
title: Alignment of 16SRNA cephalopod sequences

description: Aligned 16SrRNA mitochondrial sequences of the cephalopod specimens collected in the stomach contents of Bulweria bulwerii and reference sequences
DOI: 10.5061/dryad.13328/1
title: dataset adults 2014

description: These data describe physiological responses of Collared flycatchers Ficedula hypoleuca to breeding density and food supplementation depending on their dispersal status.
DOI: 10.5061/dryad.13328/2
title: dataset adults from control nests 2012-2013-2014

description: These data describe the temporal variation in the physiological responses of Collared flycatchers Ficedula hypoleuca to breeding density and food supplementation depending on their dispersal status, over three years.
DOI: 10.5061/dryad.13328/3
title: dataset nestlings 2014

description: These data describe reproductive responses of Collared flycatchers Ficedula hypoleuca to breeding density and food supplementation depending on their dispersal status.
DOI: 10.5061/dryad.13328/4
title: dataset nestlings from control nests 2012-2013-2014

description: These data describe the temporal variation in the reproductive responses of Collared flycatchers Ficedula hypoleuca to breeding density and food supplementation depending on their dispersal status, over three years.
DOI: 10.5061/dryad.2532d/1
title: graphics_for_relatedness_research_R_code

description: R code for making the graphics of this paper
DOI: 10.5061/dryad.2f1k2/1
title: Data from: Thin Al1-xGaxAs0.56Sb0.44 diodes with extremely weak temperature dependence of avalanche breakdown

description: This file includes all the raw data for figures in Manuscript (Thin Al1-xGaxAs0.56Sb0.44 diodes with extremely weak temperature dependence of avalanche breakdown) submitted to Royal Society Open Science.
DOI: 10.5061/dryad.2js00/1
title: Supporting Information

description: File (1) COMPADRE Plant Matrix Database version 3.0.0 downloaded on July 21, 2014; File (2) Data spreadsheet with population-level demographic metrics and climate suitability values (calculated using the R codes appended here); File (3) R scripts for demographic metric calculations, Species Distribution Models and statistical analyses; File (4) Projected maps based on the Species Distribution Models for species in this study.
DOI: 10.5061/dryad.2rf10/21
title: RES2_BD_C7_0

description: The RNA-seq data results for the sample RES2_BD_C7_0
DOI: 10.5061/dryad.2rf10/22
title: RES2_BD_C7_30

description: The RNA-seq data results for the sample RES2_BD_C7_30
DOI: 10.5061/dryad.2rf10/23
title: WT_C7_0

description: The RNA-seq data results for the sample WT_C7_0
DOI: 10.5061/dryad.2rf10/24
title: WT_C7_30

description: The RNA-seq data results for the sample WT_C7_30
DOI: 10.5061/dryad.2rf10/25
title: Calb_mbp1_C8_0

description: The RNA-seq data results for the sample Calb_mbp1_C8_0
DOI: 10.5061/dryad.2rf10/26
title: Calb_mbp1_C8_30

description: The RNA-seq data results for the sample Calb_mbp1_C8_30
DOI: 10.5061/dryad.2rf10/27
title: Delta_swi4_C8_0

description: The RNA-seq data results for the sample Delta_swi4_C8_0
DOI: 10.5061/dryad.2rf10/28
title: Delta_swi4_C8_30_

description: The RNA-seq data results for the sample Delta_swi4_C8_30
DOI: 10.5061/dryad.2rf10/29
title: Klac_mbp1_C8_0

description: The RNA-seq data results for the sample Klac_mbp1_C8_0
DOI: 10.5061/dryad.2v00t/102
title: MIDORI_UNIQUE_1.1_ND4_RDP.fasta
DOI: 10.5061/dryad.2v00t/103
title: MIDORI_UNIQUE_1.1_ND4L_RDP.fasta
DOI: 10.5061/dryad.2v00t/104
title: MIDORI_UNIQUE_1.1_ND5_RDP.fasta
DOI: 10.5061/dryad.2v00t/105
title: MIDORI_UNIQUE_1.1_ND6_RDP.fasta
DOI: 10.5061/dryad.2v00t/106
title: MIDORI_UNIQUE_1.1_srRNA_RDP.fasta
DOI: 10.5061/dryad.2v00t/107
title: MIDORI_UNIQUE_1.1_A6_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/108
title: MIDORI_UNIQUE_1.1_A8_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/109
title: MIDORI_UNIQUE_1.1_COI_SPINGO.fasta
DOI: 10.5061/dryad.34kh1/1
title: all raw data from paper

description: raw data used for all results in the paper
DOI: 10.5061/dryad.386mr.3
title: Data from: Paleoecological and stratigraphic controls on eurypterid Lagerstätten: a model for preservation in the mid-Paleozoic
DOI: 10.5061/dryad.386mr.3/1.3
title: Supplemental Table 1

description: Raw locality, age, stratigraphic, lithological, sedimentological, faunal, and reference data used in this study.
DOI: 10.5061/dryad.52qh9/1
title: Complete dataset

description: Biomass, N pool, 15N recovery and 15N enrichment for the different ecosystem N pools: Plants (aboveground + root), litter, microbial N and soil extractable N at the heavily and lightly grazed sites
DOI: 10.5061/dryad.52qh9/2
title: Plant biomass and analysis

description: Plant biomass, 15N natural abundance and 15N enrichment at the heavily and lightly grazed sites
DOI: 10.5061/dryad.52qh9/3
title: Soil chemical analysis

description: Soil extractable and microbial N, soil organic matter and moisture content, 15N natural abundance, 15N enrichment and % 15N recovery in the soil and microbial N pool at the heavily and lightly grazed sites
DOI: 10.5061/dryad.52qh9/4
title: Soil microclimates

description: Soil moisture and temperatures at the heavily and lightly grazed sites
DOI: 10.5061/dryad.53bj8/1
title: AllDataTanger2017