cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7497970
title: Supplementary_files_CS

description: Supplementary files for the manuscript "Contrast Subgraphs Allow Comparing Homogeneous and Heterogeneous Networks Derived from Omics Data"
DOI: 10.21227/fm4f-1n74
title: Oranges Classification

description: This dataset containg 1900+ images divided into fresh oranges and rotten oranges. In an orange packing factory, a video was recorded, by placing the camera parallel and above the oranges conveyor. The video was captured for 10 minutes with a quality of Ultra High Definition (4K) with 60 frames per second and a High Dynamic Range feature. The video was changed from High Dynamic Range to Standard Dynamic Range by the use of Splice - Video Editor & Maker software. The video is inserted to developed algorithm operating video processing on it and creating the frames. Resulting in 1,743 fresh oranges and 245 rotten oranges.
DOI: 10.6084/m9.figshare.3761562.v2443
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.7388507
title: Accurate Prediction of Enzyme Thermostabilization with Rosetta using AlphaFold Ensembles

description: DT<sub>M</sub> vs DG<sub>f,mut</sub> values for scoring LovD, LipA, <em>p</em>-nitrobenzyl esterase, xylanase A and tryptophan 6-halogenase variants (<em>DTM_vs_DDGf_mut.xlsx</em>). AlphaFold predicted structures in PDB and Pymol sessions formats for top scoring LovD, LovD6, LovD9, LipA WT, LipA 6B, <em>p</em>-nitrobenzyl esterase WT, xylanase A WT and tryptophan 6-halogenase WT decoys (<em>mAF-min_ensembles.zip</em>). Rosetta energies for all calculations (<em>Rosetta_scores.zip</em>).
description: This research was supported by the Agencia Estatal Investigacion of Spain (AEI; grant RTI2018-099592-B-C22) and the Partnership for Advanced Computing in Europe (PRACE- ICEI, refer-ence icei-prace-2021-0001). F.P. thanks the Ministerio de Economía y Competitividad for a Juan de la Cierva Incorporación (IJC2020-045506-I) research contract.
DOI: 10.5281/zenodo.7497464
title: Accurate Prediction of Enzyme Thermostabilization with Rosetta using AlphaFold Ensembles

description: DT<sub>M</sub> vs DG<sub>f,mut</sub> values for scoring LovD, LipA, <em>p</em>-nitrobenzyl esterase, xylanase A and tryptophan 6-halogenase variants (<em>DTM_vs_DDGf_mut.xlsx</em>). AlphaFold predicted structures in PDB and Pymol sessions formats for top scoring LovD, LovD6, LovD9, LipA WT, LipA 6B, <em>p</em>-nitrobenzyl esterase WT, xylanase A WT and tryptophan 6-halogenase WT decoys (<em>mAF-min_ensembles.zip</em>). Rosetta energies for all calculations (<em>Rosetta_scores.zip</em>).
description: This research was supported by the Agencia Estatal Investigacion of Spain (AEI; grant RTI2018-099592-B-C22) and the Partnership for Advanced Computing in Europe (PRACE- ICEI, refer-ence icei-prace-2021-0001). F.P. thanks the Ministerio de Economía y Competitividad for a Juan de la Cierva Incorporación (IJC2020-045506-I) research contract.
DOI: 10.5281/zenodo.7388508
title: Accurate Prediction of Enzyme Thermostabilization with Rosetta using AlphaFold Ensembles

description: DT<sub>M</sub> vs DG<sub>f,mut</sub> values for scoring LovD, LipA, <em>p</em>-nitrobenzyl esterase, xylanase A and tryptophan 6-halogenase variants (<em>DTM_vs_DDGf_mut.xlsx</em>). AlphaFold predicted structures in PDB and Pymol sessions formats for top scoring LovD, LovD6, LovD9, LipA WT, LipA 6B, <em>p</em>-nitrobenzyl esterase WT, xylanase A WT and tryptophan 6-halogenase WT decoys (<em>mAF-min_ensembles.zip</em>). Rosetta energies for all calculations (<em>Rosetta_scores.zip</em>).
description: This research was supported by the Agencia Estatal Investigacion of Spain (AEI; grant RTI2018-099592-B-C22) and the Partnership for Advanced Computing in Europe (PRACE- ICEI, refer-ence icei-prace-2021-0001). F.P. thanks the Ministerio de Economía y Competitividad for a Juan de la Cierva Incorporación (IJC2020-045506-I) research contract.
DOI: 10.5281/zenodo.6873575
title: Touché22-Image-Retrieval-for-Arguments

description: Data for the Image Retrieval for Arguments task at Touché 2022. This version is lacking the touche22-image-search-archives.zip and touche22-image-search-screenshots.zip for space restrictions. Please get them from https://files.webis.de/corpora/corpora-webis/corpus-touche-image-search-22/
DOI: 10.5281/zenodo.6786948
title: Touché22-Image-Retrieval-for-Arguments

description: Data for the Image Retrieval for Arguments task at Touché 2022. This version is lacking the touche22-image-search-archives.zip and touche22-image-search-screenshots.zip for space restrictions. Please get them from https://files.webis.de/corpora/corpora-webis/corpus-touche-image-search-22/
DOI: 10.6084/m9.figshare.16841794.v1
title: Differential_polyadenylation

description: Contents:<br>nanopolish: direct RNA datasets analysed by nanopolish- raw_data: merged data between nanopolish and npTranscript results- analysis: testing changes in poly(A) length between control and infected using Wilcoxon's test of ranks with log-transformed data of Calu-3 48hpi direct RNA dataset<br>- scripts: example scripts for testing changes in poly(A) length between control and infected using Wilcoxon's test of ranks, and also with log-transformed data<br><br><br>tailfindr: direct cDNA datasets analysed by tailfindr- raw_data: merged data between tailfindr and npTranscript results<br>- analysis: tailfindr outputs and mixed model analysis outputs where files with names ending with 'int' shows the intercept (changes in log tail length relative to control), and files with names ending with 'log_nofilter' shows the padj values for changes between control and infected poly(A) lengths.<br>- scripts: example scripts for poly(A) vs poly(T) correlation, mixed_model and generating raincloud plots for poly(A) length <br><br><br>nanopolish_vs_tailfindr: <br>- raw_data: median poly(A/T) lengths from nanopolish and tailfindr (before log transformation)- analysis: Spearman's correlation tests between nanopolish poly(A) and tailfindr poly(A/T) median lengths <br>- scripts: example scripts for generating Spearman's correlation tests between nanopolish poly(A) and tailfindr poly(A/T) median lengths <br><br>
DOI: 10.5517/ccdc.csd.cc2bsq0w
title: CCDC 2168698: Experimental Crystal Structure Determination

description: Related Article: Xia Chen, Zengwei Luo, Yong Chen, Yonghui Zhang|2022|Org.Lett.|24|9200|doi:10.1021/acs.orglett.2c03619
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c4lbg
title: CCDC 2179155: Experimental Crystal Structure Determination

description: Related Article: Xia Chen, Zengwei Luo, Yong Chen, Yonghui Zhang|2022|Org.Lett.|24|9200|doi:10.1021/acs.orglett.2c03619
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7910/dvn/unvlos
title: Brazilian Mortality

description: Contains information about the death itself, e.g. its cause, where it happened etc. as well as information about the deceased, e.g. age, education etc.
DOI: 10.6084/m9.figshare.16841794.v2
title: Differential_polyadenylation

description: Contents: <br> nanopolish: direct RNA datasets analysed by nanopolish - raw_data: merged data between nanopolish and npTranscript results - analysis: testing changes in poly(A) length between control and infected using Wilcoxon's test of ranks with log-transformed data of Calu-3 48hpi direct RNA dataset<br> - scripts: example scripts for testing changes in poly(A) length between control and infected using Wilcoxon's test of ranks, and also with log-transformed data<br> <br> <br> tailfindr: direct cDNA datasets analysed by tailfindr - scripts: example scripts for poly(A) vs poly(T) correlation, mixed_model and generating raincloud plots for poly(A) length<br> - raw_data: merged data between tailfindr and npTranscript results<br> - analysis: tailfindr outputs and mixed model analysis outputs where files with names ending with 'int' shows the coefficient (changes in log tail length relative to control (intercept), and files with names ending with 'log_nofilter' shows the padj values for changes between control and infected poly(A) lengths.<br> <br> <br> nanopolish_vs_tailfindr:<br> - raw_data: median poly(A/T) lengths from nanopolish and tailfindr (before log transformation) - analysis: Spearman's correlation tests between nanopolish poly(A) and tailfindr poly(A/T) median lengths<br> - scripts: example scripts for generating Spearman's correlation tests between nanopolish poly(A) and tailfindr poly(A/T) median lengths <br> <br>
DOI: 10.5281/zenodo.7487299
title: AntiRef90

description: AntiRef90 is one of several AntiRef cluster datasets. AntiRef90 was created by clustering AntiRef92 at 90% sequence identity.
DOI: 10.5281/zenodo.7487298
title: AntiRef90

description: AntiRef90 is one of several AntiRef cluster datasets. AntiRef90 was created by clustering AntiRef92 at 90% sequence identity.
DOI: 10.5281/zenodo.7487199
title: AntiRef94

description: AntiRef94 is one of several AntiRef cluster datasets. AntiRef94 was created by clustering AntiRef96 at 94% sequence identity.
DOI: 10.5281/zenodo.7487264
title: AntiRef92

description: AntiRef92 is one of several AntiRef cluster datasets. AntiRef92 was created by clustering AntiRef94 at 92% sequence identity.
DOI: 10.5281/zenodo.7476040
title: AntiRef98

description: AntiRef98 is one of several AntiRef cluster datasets. AntiRef98 was created by clustering AntiRef99 at 98% sequence identity.
DOI: 10.5281/zenodo.7487182
title: AntiRef96

description: AntiRef96 is one of several AntiRef cluster datasets. AntiRef96 was created by clustering AntiRef98 at 96% sequence identity.
DOI: 10.5281/zenodo.7474657
title: AntiRef100

description: AntiRef100 is one of several AntiRef cluster datasets. AntiRef100 was created by clustering the entire filtered AntiRef dataset at 100% sequence identity.
DOI: 10.5281/zenodo.7498024
title: SG - December 2022

description: Measurements of SG (Global) in December 2022 Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498023
title: SG - December 2022

description: Measurements of SG (Global) in December 2022 Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498026
title: LPL1 - December 2022

description: Measurements of LPL1 (Teide NP) in December 2022 Tenerife Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498025
title: LPL1 - December 2022

description: Measurements of LPL1 (Teide NP) in December 2022 Tenerife Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498028
title: LPL2 - December 2022

description: Measurements of LPL2 (Caldera de Taburiente NP) in December 2022 La Palma Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498027
title: LPL2 - December 2022

description: Measurements of LPL2 (Caldera de Taburiente NP) in December 2022 La Palma Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498030
title: LPL3 - December 2022

description: Measurements of LPL3 (Madeira East Coast) in December 2022 Madeira Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498029
title: LPL3 - December 2022

description: Measurements of LPL3 (Madeira East Coast) in December 2022 Madeira Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498032
title: LPL4 - December 2022

description: Measurements of LPL4 (Ilha do Corvo) in December 2022 Corvo Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498031
title: LPL4 - December 2022

description: Measurements of LPL4 (Ilha do Corvo) in December 2022 Corvo Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498034
title: LPL5 - December 2022

description: Measurements of LPL5 (Tejeda) in December 2022 Gran Canaria Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498033
title: LPL5 - December 2022

description: Measurements of LPL5 (Tejeda) in December 2022 Gran Canaria Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498036
title: LPL7 - December 2022

description: Measurements of LPL7 (Archipielago Chinijo) in December 2022 Archipielago Chinijo Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498035
title: LPL7 - December 2022

description: Measurements of LPL7 (Archipielago Chinijo) in December 2022 Archipielago Chinijo Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498038
title: LPL8 - December 2022

description: Measurements of LPL8 (Timanfaya NP) in December 2022 Lanzarote Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498037
title: LPL8 - December 2022

description: Measurements of LPL8 (Timanfaya NP) in December 2022 Lanzarote Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498040
title: LPL12 - December 2022

description: Measurements of LPL12 (Ilhas Desertas) in December 2022 Madeira Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498039
title: LPL12 - December 2022

description: Measurements of LPL12 (Ilhas Desertas) in December 2022 Madeira Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498042
title: LPL14 - December 2022

description: Measurements of LPL14 (Ilha das Flores) in December 2022 Flores Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498041
title: LPL14 - December 2022

description: Measurements of LPL14 (Ilha das Flores) in December 2022 Flores Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498044
title: LPL15 - December 2022

description: Measurements of LPL15 (Badajoz) in December 2022 Provincia de Badajoz Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498043
title: LPL15 - December 2022

description: Measurements of LPL15 (Badajoz) in December 2022 Provincia de Badajoz Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498046
title: LPL16 - December 2022

description: Measurements of LPL16 (Caceres) in December 2022 Provincia de Cáceres Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498045
title: LPL16 - December 2022

description: Measurements of LPL16 (Caceres) in December 2022 Provincia de Cáceres Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498048
title: LPL17 - December 2022

description: Measurements of LPL17 (Isla de Tabarca) in December 2022 Alicante Light Pollution Laboratorie info
DOI: 10.5281/zenodo.7498047
title: LPL17 - December 2022

description: Measurements of LPL17 (Isla de Tabarca) in December 2022 Alicante Light Pollution Laboratorie info
DOI: 10.6084/m9.figshare.16841794
title: Differential_polyadenylation

description: Contents: <br> nanopolish: direct RNA datasets analysed by nanopolish - raw_data: merged data between nanopolish and npTranscript results - analysis: testing changes in poly(A) length between control and infected using Wilcoxon's test of ranks with log-transformed data of Calu-3 48hpi direct RNA dataset<br> - scripts: example scripts for testing changes in poly(A) length between control and infected using Wilcoxon's test of ranks, and also with log-transformed data<br> <br> <br> tailfindr: direct cDNA datasets analysed by tailfindr - scripts: example scripts for poly(A) vs poly(T) correlation, mixed_model and generating raincloud plots for poly(A) length<br> - raw_data: merged data between tailfindr and npTranscript results<br> - analysis: tailfindr outputs and mixed model analysis outputs where files with names ending with 'int' shows the coefficient (changes in log tail length relative to control (intercept), and files with names ending with 'log_nofilter' shows the padj values for changes between control and infected poly(A) lengths.<br> <br> <br> nanopolish_vs_tailfindr:<br> - raw_data: median poly(A/T) lengths from nanopolish and tailfindr (before log transformation) - analysis: Spearman's correlation tests between nanopolish poly(A) and tailfindr poly(A/T) median lengths<br> - scripts: example scripts for generating Spearman's correlation tests between nanopolish poly(A) and tailfindr poly(A/T) median lengths <br> <br> tailfindr_scripts: -tailfindr-related scripts only <br> tailfindr_calu_48hpi_analysis: - analysis results files from calu 48 hpi dataset including 'meancalc' - working sheet for backtransforming and calculating difference in log-tranformed poly(A) lengths between control and infected - control: intercepts for control - infected: coefficients for infected - mt: mitochondrial genes - nonmt: non-mitochondrial genes <br> <br> <br>
DOI: 10.6084/m9.figshare.16841794.v4
title: Differential_polyadenylation

description: Contents: <br> nanopolish: direct RNA datasets analysed by nanopolish - raw_data: merged data between nanopolish and npTranscript results - analysis: testing changes in poly(A) length between control and infected using Wilcoxon's test of ranks with log-transformed data of Calu-3 48hpi direct RNA dataset<br> - scripts: example scripts for testing changes in poly(A) length between control and infected using Wilcoxon's test of ranks, and also with log-transformed data<br> <br> <br> tailfindr: direct cDNA datasets analysed by tailfindr - scripts: example scripts for poly(A) vs poly(T) correlation, mixed_model and generating raincloud plots for poly(A) length<br> - raw_data: merged data between tailfindr and npTranscript results<br> - analysis: tailfindr outputs and mixed model analysis outputs where files with names ending with 'int' shows the coefficient (changes in log tail length relative to control (intercept), and files with names ending with 'log_nofilter' shows the padj values for changes between control and infected poly(A) lengths.<br> <br> <br> nanopolish_vs_tailfindr:<br> - raw_data: median poly(A/T) lengths from nanopolish and tailfindr (before log transformation) - analysis: Spearman's correlation tests between nanopolish poly(A) and tailfindr poly(A/T) median lengths<br> - scripts: example scripts for generating Spearman's correlation tests between nanopolish poly(A) and tailfindr poly(A/T) median lengths <br> <br> tailfindr_scripts: -tailfindr-related scripts only <br> tailfindr_calu_48hpi_analysis: - analysis results files from calu 48 hpi dataset including 'meancalc' - working sheet for backtransforming and calculating difference in log-tranformed poly(A) lengths between control and infected - control: intercepts for control - infected: coefficients for infected - mt: mitochondrial genes - nonmt: non-mitochondrial genes <br> <br> <br>
DOI: 10.6084/m9.figshare.16841794.v3
title: Differential_polyadenylation

description: Contents: <br> nanopolish: direct RNA datasets analysed by nanopolish - raw_data: merged data between nanopolish and npTranscript results - analysis: testing changes in poly(A) length between control and infected using Wilcoxon's test of ranks with log-transformed data of Calu-3 48hpi direct RNA dataset<br> - scripts: example scripts for testing changes in poly(A) length between control and infected using Wilcoxon's test of ranks, and also with log-transformed data<br> <br> <br> tailfindr: direct cDNA datasets analysed by tailfindr - scripts: example scripts for poly(A) vs poly(T) correlation, mixed_model and generating raincloud plots for poly(A) length<br> - raw_data: merged data between tailfindr and npTranscript results<br> - analysis: tailfindr outputs and mixed model analysis outputs where files with names ending with 'int' shows the coefficient (changes in log tail length relative to control (intercept), and files with names ending with 'log_nofilter' shows the padj values for changes between control and infected poly(A) lengths.<br> <br> <br> nanopolish_vs_tailfindr:<br> - raw_data: median poly(A/T) lengths from nanopolish and tailfindr (before log transformation) - analysis: Spearman's correlation tests between nanopolish poly(A) and tailfindr poly(A/T) median lengths<br> - scripts: example scripts for generating Spearman's correlation tests between nanopolish poly(A) and tailfindr poly(A/T) median lengths <br> <br>
DOI: 10.6084/m9.figshare.19130026
title: Petrogenesis of the late Tonian arc-related Um Balad gabbro-diorite complex (Egypt) and insight into its spatially related orogenic gold mineralization

description: The gabbro-diorite complex of the Um Balad prospect hosts lode gold mineralization. The complex is dated at 723 ± 4 Ma using the LA-ICP-MS U-Pb zircon method and is correlated with the late Tonian-early Cryogenian subduction-related magmatic stage during the evolution of the Arabian-Nubian Shield. The gabbro-diorite complex evolved through the crystallization of a calc-alkaline magma and the subduction signature of this magma is verified by primitive mantle-normalized trace element patterns that show enrichment in large ion lithophile elements, U, and Th relative to high field strength elements as well as negative Nb and Ti anomalies. The high La/Yb<sub>cn</sub> (3.1–9.4) and Ta/Yb (0.12–0.41) ratios are consistent with a continental arc rather than an oceanic arc system. Amphibole chemistry indicates that this complex might have crystallized under a moderately oxidizing condition from a hydrous magma (&gt;6 wt% water content) at temperature and pressure estimates of about 800°C and 3 kbar, respectively. Gold mineralization in the Um Balad prospect is confined to structurally controlled massive quartz±carbonate veins and surrounding alteration halos. Alteration in the prospect is represented by localized sericitization and carbonation as well as pervasive chlorite-sericite alteration. The alteration halos are characterized by enrichment in K and Rb and depletion in Ca and Sr compared to their host rocks. The veins of the prospect are related to lower order extensional fractures associated with the regional first order transpressional Najd Fault System. The high Fe contents of the gabbro-diorite complex represent a suitable chemical trap for gold through sulfidation of the host rocks. Supergene alteration resulted in the formation of goethite in association with atacamite and chrysocolla. Free mill gold is associated with these supergene phases, which were deposited in near neutral to slightly alkaline conditions.