cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11192708.v1
title: MZ_0057_003_Neophyllobius_glaesus_60x_legIII_left_dorsall_partone

description: <b>Species:</b> <i>Neophyllobius glaesus</i> Zmudzinski<b>Source:</b> Baltic amber<b>Deposition: </b>Geological-Paleontological Institute and Museum of the University of Hamburg, Germany, under the collection number GPIH 4995<b>Author's catalog number:</b> MZ_XXXX_003_Neophyllobius_glaesus_XXx_XXX_info<b>Microscope:</b> Nikon Eclipse Ni-U<br><b>Camera:</b> Nikon DS-Ri2<b>Image aquisition software:</b> NIS-Elements D<b>Optics:</b> CFI Apochromat NIR 60X W + DIC
DOI: 10.6084/m9.figshare.11191238
title: Supplementary Data 2 from Formation and loss of metastable brucite: does Fe(II)-bearing brucite support microbial activity in serpentinizing ecosystems?

description: Raw data used to generate Figure 1 and Figure 2 can be accessed in .csv and .tiff format through a Supplementary Data File
DOI: 10.6084/m9.figshare.11191238.v1
title: Supplementary Data 2 from Formation and loss of metastable brucite: does Fe(II)-bearing brucite support microbial activity in serpentinizing ecosystems?

description: Raw data used to generate Figure 1 and Figure 2 can be accessed in .csv and .tiff format through a Supplementary Data File
DOI: 10.6084/m9.figshare.11190260
title: Aneks 1. Wyniki badania liczby i wieku źródeł piśmienniczych przywoływanych w bibliografiach załącznikowych artykułów opublikowanych w czasopismach stanowiących przedmiot badania, z podziałem na dyscypliny, do których należały artykuły cytujące

description: Wyniki badania liczby i wieku źródeł piśmienniczych przywoływanych w bibliografiach załącznikowych artykułów opublikowanych w czasopismach stanowiących przedmiot badania, z podziałem na dyscypliny, do których należały artykuły cytujące
DOI: 10.6084/m9.figshare.11189228
title: Aneks 2. Liczby cytowań zarejestrowane w badaniu empirycznym z rozróżnieniem na poszczególne typy wydawnicze

description: Liczby cytowań zarejestrowane w badaniu empirycznym z rozróżnieniem na poszczególne typy wydawnicze
DOI: 10.6084/m9.figshare.11189228.v1
title: Aneks 2. Liczby cytowań zarejestrowane w badaniu empirycznym z rozróżnieniem na poszczególne typy wydawnicze

description: Liczby cytowań zarejestrowane w badaniu empirycznym z rozróżnieniem na poszczególne typy wydawnicze
DOI: 10.6084/m9.figshare.11188343
title: Moth Pollen Table

description: This is a table detailing which moth species had identifiable pollen from insect-pollinated plants within a pond habitat (pond and its margin). The table also details how much pollen was found, how many types of pollen were carried, and where the pollen was found on the moth.
DOI: 10.6084/m9.figshare.11189885.v1
title: Detecting spatio-temporal extents

description: This dataset contains data and code of our papper 'Detecting spatio-temporal extents of traffic congestion: A density-based moving object clustering approach'.
DOI: 10.6084/m9.figshare.11190260.v2
title: Aneks 1. Wyniki badania liczby i wieku źródeł piśmienniczych przywoływanych w bibliografiach załącznikowych artykułów opublikowanych w czasopismach stanowiących przedmiot badania, z podziałem na dyscypliny, do których należały artykuły cytujące

description: Wyniki badania liczby i wieku źródeł piśmienniczych przywoływanych w bibliografiach załącznikowych artykułów opublikowanych w czasopismach stanowiących przedmiot badania, z podziałem na dyscypliny, do których należały artykuły cytujące
DOI: 10.6084/m9.figshare.11188886.v1
title: Rates of nitrification and ammonium assimilation

description: Rates of nitrification and ammonium assimilation along the Pearl River Estuary in two summer cruises
DOI: 10.6084/m9.figshare.11188274
title: Aneks 1. Wykaz czasopism stanowiących materiał badawczy i źródło zarejestrowanych w badaniu przypisów bibliograficznych

description: Wykaz czasopism stanowiących materiał badawczy i źródło zarejestrowanych w badaniu przypisów bibliograficznych.
DOI: 10.6084/m9.figshare.11188343.v1
title: Moth Pollen Table

description: This is a table detailing which moth species had identifiable pollen from insect-pollinated plants within a pond habitat (pond and its margin). The table also details how much pollen was found, how many types of pollen were carried, and where the pollen was found on the moth.
DOI: 10.6084/m9.figshare.11188274.v1
title: Aneks 1. Wykaz czasopism stanowiących materiał badawczy i źródło zarejestrowanych w badaniu przypisów bibliograficznych

description: Wykaz czasopism stanowiących materiał badawczy i źródło zarejestrowanych w badaniu przypisów bibliograficznych.
DOI: 10.6084/m9.figshare.11190260.v1
title: Aneks 3. Wyniki badania liczby i wieku źródeł piśmienniczych przywoływanych w bibliografiach załącznikowych artykułów opublikowanych w czasopismach stanowiących przedmiot badania, z podziałem na dyscypliny, do których należały artykuły cytujące

description: Wyniki badania liczby i wieku źródeł piśmienniczych przywoływanych w bibliografiach załącznikowych artykułów opublikowanych w czasopismach stanowiących przedmiot badania, z podziałem na dyscypliny, do których należały artykuły cytujące
DOI: 10.6084/m9.figshare.11188253
title: Female gender in the hormonally active age group plays a major role in high-grade chondrosarcoma survival

description: Female gender in the hormonally active age group plays a major role in high-grade chondrosarcoma survival
DOI: 10.6084/m9.figshare.11189885.v2
title: code and result

description: This dataset contains code and result of our papper 'Detecting spatio-temporal extents of traffic congestion: A density-based moving object clustering approach'.ourcode.rar contains data and code of our method;<br>kanetal2018.rar contains data and code of Kan's method;liumethod.rar contains data and code of Liu's method.
DOI: 10.6084/m9.figshare.11188253.v1
title: Female gender in the hormonally active age group plays a major role in high-grade chondrosarcoma survival

description: Female gender in the hormonally active age group plays a major role in high-grade chondrosarcoma survival
DOI: 10.6084/m9.figshare.11184539
title: Metadata record for: Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer

description: This dataset contains key characteristics about the data described in the Data Descriptor Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format<br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11183882
title: Aesculus hippocastanum

description: 686 unique genotypes of <i>Aesculus hippocastanum</i> from Greece, identified with using eight SSR markers.
DOI: 10.6084/m9.figshare.11189885.v3
title: code and result

description: This dataset contains code and result of our papper 'Detecting spatio-temporal extents of traffic congestion: A density-based moving object clustering approach'.ourcode.rar contains data and code of our method;<br>kanetal2018.rar contains data and code of Kan's method;liumethod.rar contains data and code of Liu's method.
DOI: 10.6084/m9.figshare.11182178
title: Yada Yada virus

description: A FASTA file containing the genome sequence for Yada Yada virus (YYV). <br>YYV was assembled from metatranscriptomic data belonging to a pool of 1,000 mosquitoes trapped in Mildura, Victoria, Australia.
DOI: 10.6084/m9.figshare.11181065
title: Dynamic architecture and regulatory implications of the miRNA network underlying the response to stress in melon

description: miRNAs are small RNAs that regulate mRNAs at both transcriptional and posttranscriptional level. In plants, miRNAs are involved in the regulation of different processes including development and stress-response. Elucidating how stress-responsive miRNAs are regulated is key to understand the global response to stress but also to develop efficient biotechnological tools that could help to cope with stress. Here, we describe a computational approach based on sRNA sequencing, transcript quantification and degradome data to analyse the accumulation, function and structural organization of melon miRNAs reactivated under seven biotic and abiotic stress conditions at two and four days post-treatment. Our pipeline allowed us to identify fourteen stress-responsive miRNAs (including evolutionary conserved such as miR156, miR166, miR172, miR319, miR398, miR399, miR894 and miR408) at both analysed times. According to our analysis miRNAs were categorized in three groups showing a broad-, intermediate- or narrow- response range. miRNAs reactive to a broad range of environmental cues appear as central components in the stress-response network. The strictly coordinated response of miR398 and miR408 (broad response-range) to the seven stress treatments during the period analysed here reinforces this notion. Although both, the amplitude and diversity of the miRNA-related response to stress changes during the exposition time, the architecture of the miRNA-network is conserved. This organization of miRNA response to stress is also conserved in rice and soybean supporting the conservation of miRNA-network organization in other crops. Overall, our work sheds light into how miRNA networks in plants organize and function during stress.
DOI: 10.6084/m9.figshare.11184539.v2
title: Metadata record for: Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer

description: This dataset contains key characteristics about the data described in the Data Descriptor Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format<br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11184539.v1
title: Metadata record for: Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer

description: This dataset contains key characteristics about the data described in the Data Descriptor Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11181065.v1
title: Dynamic architecture and regulatory implications of the miRNA network underlying the response to stress in melon

description: miRNAs are small RNAs that regulate mRNAs at both transcriptional and posttranscriptional level. In plants, miRNAs are involved in the regulation of different processes including development and stress-response. Elucidating how stress-responsive miRNAs are regulated is key to understand the global response to stress but also to develop efficient biotechnological tools that could help to cope with stress. Here, we describe a computational approach based on sRNA sequencing, transcript quantification and degradome data to analyse the accumulation, function and structural organization of melon miRNAs reactivated under seven biotic and abiotic stress conditions at two and four days post-treatment. Our pipeline allowed us to identify fourteen stress-responsive miRNAs (including evolutionary conserved such as miR156, miR166, miR172, miR319, miR398, miR399, miR894 and miR408) at both analysed times. According to our analysis miRNAs were categorized in three groups showing a broad-, intermediate- or narrow- response range. miRNAs reactive to a broad range of environmental cues appear as central components in the stress-response network. The strictly coordinated response of miR398 and miR408 (broad response-range) to the seven stress treatments during the period analysed here reinforces this notion. Although both, the amplitude and diversity of the miRNA-related response to stress changes during the exposition time, the architecture of the miRNA-network is conserved. This organization of miRNA response to stress is also conserved in rice and soybean supporting the conservation of miRNA-network organization in other crops. Overall, our work sheds light into how miRNA networks in plants organize and function during stress.
DOI: 10.6084/m9.figshare.11182178.v1
title: Yada yada virus

description: A FASTA file containing the genome sequence for Yada yada virus (YYV). <br>YYV was assembled from metatranscriptomic data belonging to a pool of 1,000 mosquitoes trapped in Mildura, Victoria, Australia.
DOI: 10.6084/m9.figshare.11182178.v3
title: Yada Yada virus

description: A FASTA file containing the genome sequence for Yada Yada virus (YYV). <br>YYV was assembled from metatranscriptomic data belonging to a pool of 1,000 mosquitoes trapped in Mildura, Victoria, Australia.
DOI: 10.6084/m9.figshare.11176907
title: Supplementary Material for: The Mating Call of the Terrestrial Toad, <b><i>Rhinella arenarum</i></b>, as a Cue for Spatial Orientation and Its Associated Brain Activity

description: Acoustic communication is essential for reproduction and predator avoidance in many anuran species. For example, mating calls are generally produced by males and represent a conspicuous communication signal employed during the breeding season. Although anuran mating calls have been largely studied to analyze content and phonotaxis toward choruses, they are rarely discussed as sources of information guiding spatial behavior in broader contexts. This is striking if we consider that previous studies have shown anurans to be impressive navigators. In the current study, we investigated whether terrestrial toad (<i>Rhinella arenarum</i>) males can use a mating call as a spatial cue to locate a water reward in a laboratory maze. Male toads could indeed learn the location of a reward guided by a mating call. This navigational ability, as indicated by c-Fos, was associated with greater neuronal activity in the telencephalic hippocampal formation (HF; also referred to in amphibians as medial pallium), the medial septum (MS), and the central amygdala (CeA). HF and MS are telencephalic structures associated with spatial navigation in mammals and other vertebrates. The CeA, by contrast, has been studied in the context of acoustic processing and communication in other amphibian species. The results are discussed in the framework of an evolutionary conserved, HF-septal spatial-cognitive network shared by amphibians and mammals.
DOI: 10.6084/m9.figshare.11176349
title: XXXX

description: CpG_info.tsv contains the annotation for all 470,837 CpG sites used in this study.
DOI: 10.6084/m9.figshare.11176907.v1
title: Supplementary Material for: The Mating Call of the Terrestrial Toad, <b><i>Rhinella arenarum</i></b>, as a Cue for Spatial Orientation and Its Associated Brain Activity

description: Acoustic communication is essential for reproduction and predator avoidance in many anuran species. For example, mating calls are generally produced by males and represent a conspicuous communication signal employed during the breeding season. Although anuran mating calls have been largely studied to analyze content and phonotaxis toward choruses, they are rarely discussed as sources of information guiding spatial behavior in broader contexts. This is striking if we consider that previous studies have shown anurans to be impressive navigators. In the current study, we investigated whether terrestrial toad (<i>Rhinella arenarum</i>) males can use a mating call as a spatial cue to locate a water reward in a laboratory maze. Male toads could indeed learn the location of a reward guided by a mating call. This navigational ability, as indicated by c-Fos, was associated with greater neuronal activity in the telencephalic hippocampal formation (HF; also referred to in amphibians as medial pallium), the medial septum (MS), and the central amygdala (CeA). HF and MS are telencephalic structures associated with spatial navigation in mammals and other vertebrates. The CeA, by contrast, has been studied in the context of acoustic processing and communication in other amphibian species. The results are discussed in the framework of an evolutionary conserved, HF-septal spatial-cognitive network shared by amphibians and mammals.
DOI: 10.6084/m9.figshare.11182178.v2
title: Yada Yada virus

description: A FASTA file containing the genome sequence for Yada Yada virus (YYV). <br>YYV was assembled from metatranscriptomic data belonging to a pool of 1,000 mosquitoes trapped in Mildura, Victoria, Australia.
DOI: 10.6084/m9.figshare.11176289
title: Supplementary Material for: Integrative Network Analysis of Multi-Omics Data in the Link between Plasma Carotenoid Concentrations and Lipid Profile

description: <b><i>Introduction:</i></b> Carotenoids, which are a reliable biomarker of fruit and vegetable consumption, are positively associated with the lipid profile. Circulating carotenoid concentrations may interact with several omics profiles including genome, transcriptome, and epigenome. Few studies have used multi-omics approaches, and they rarely include environmental factors, such as diet. <b><i>Objective:</i></b> The objective of this observational study was to examine the potential role of multi-omics data in the interconnection between diet, represented by total carotenoids, and lipid profile using weighted gene correlation network analysis (WGCNA). <b><i>Methods:</i></b> Blood leukocyte DNA methylation levels of 472,245 CpG sites and whole blood gene expression levels of 18,160 transcripts were tested for associations with total carotenoid concentrations using regressions in 48 healthy subjects. WGCNA was used to identify co-omics modules and hub genes related to the lipid profile. <b><i>Results:</i></b> Among genes associated with total carotenoid concentrations, a total of 236 genes were identified at both DNA methylation and gene expression levels. Using WGCNA, six modules, consisting of groups of highly correlated genes represented by colors, were identified and linked to the lipid profile. Probes clustered in the turquoise and green modules correlated with plasma lipid concentrations. A total of 28 hub genes were identified. <b><i>Conclusions:</i></b> Genome-wide DNA methylation and gene expression levels were both associated with plasma total carotenoid concentrations. Several hub genes, mostly involved in lipid metabolism and inflammatory response with several genetic variants associated with plasma lipid concentrations, came out of the integrative analysis. This provides a comprehensive understanding of the interactive molecular system between carotenoids, omics, and plasma lipid profile.
DOI: 10.6084/m9.figshare.11176349.v2
title: XXXX

description: CpG_info.tsv contains the annotation for all 470,837 CpG sites used in this study.
DOI: 10.6084/m9.figshare.11176349.v1
title: CpG annotation

description: CpG_info.tsv contains the annotation for all 470,837 CpG sites used in this study.
DOI: 10.6084/m9.figshare.11175497
title: Short-term response in new users of anti-TNF predicts long-term productivity and non-disability: analysis of Czech ATTRA ankylosing spondylitis biologic registry

description: <b>Objectives</b>: To assess the role of short-term response to first anti-TNF in long-term prediction of disability. <b>Methods</b>: In nationwide registry ATTRA, we identified ankylosing spondylitis patients starting anti-TNF between 01/2003 and 12/2016. Full disability and work impairment (WI; WPAI questionnaire) were predicted via the Cox- and lagged-parameter mixed-effect regression. <b>Results</b>: 2,274 biologicals-naïve patients newly indicated to anti-TNF were prospectively followed (6,333 patient-years; median follow-up 1.9 years). Reaching BASDAI <b>&lt;</b> 4 (77.4%) and ASDAS-CRP <b>&lt;</b> 2.1 (61.1%) after 3 months of anti-TNF both decreased the risk of future disability by ≈2.5-fold. ASDAS-CRP <b>&lt;</b> 2.1 predicted non-disability better than BASDAI <b>&lt;</b> 4 & CRP <b>&lt;</b> 5 mg/L (p = 0.032). BASDAI <b>&lt;</b> 4 & CRP <b>&lt;</b> 5 mg/L was comparable to BASDAI <b>&lt;</b> 4 (p = 0.941) and to BASDAI change by &gt;50% or by &gt;2 points (p = 0.902). ASDAS-CRP change &gt;1.1 and &gt;2.0 both failed to predict non-disability. Once on anti-TNF therapy, the strongest predictor of WI was Pain (SF36). Yearly increase in indirect costs remains below €3,000 in those reaching ASDAS-CRP <b>&lt;</b> 2.1. <b>Conclusions</b>: Low disease activity measured by ASDAS-CRP ≤ 2.1 should be used to measure the outcome of new anti-TNF therapy. Continuous WI could be decreased through pain management.
DOI: 10.6084/m9.figshare.11174141
title: Demographic data

description: Demographic and basic clinical data of patients with chronic heart failure
DOI: 10.6084/m9.figshare.11175497.v1
title: Short-term response in new users of anti-TNF predicts long-term productivity and non-disability: analysis of Czech ATTRA ankylosing spondylitis biologic registry

description: <b>Objectives</b>: To assess the role of short-term response to first anti-TNF in long-term prediction of disability. <b>Methods</b>: In nationwide registry ATTRA, we identified ankylosing spondylitis patients starting anti-TNF between 01/2003 and 12/2016. Full disability and work impairment (WI; WPAI questionnaire) were predicted via the Cox- and lagged-parameter mixed-effect regression. <b>Results</b>: 2,274 biologicals-naïve patients newly indicated to anti-TNF were prospectively followed (6,333 patient-years; median follow-up 1.9 years). Reaching BASDAI <b>&lt;</b> 4 (77.4%) and ASDAS-CRP <b>&lt;</b> 2.1 (61.1%) after 3 months of anti-TNF both decreased the risk of future disability by ≈2.5-fold. ASDAS-CRP <b>&lt;</b> 2.1 predicted non-disability better than BASDAI <b>&lt;</b> 4 & CRP <b>&lt;</b> 5 mg/L (p = 0.032). BASDAI <b>&lt;</b> 4 & CRP <b>&lt;</b> 5 mg/L was comparable to BASDAI <b>&lt;</b> 4 (p = 0.941) and to BASDAI change by &gt;50% or by &gt;2 points (p = 0.902). ASDAS-CRP change &gt;1.1 and &gt;2.0 both failed to predict non-disability. Once on anti-TNF therapy, the strongest predictor of WI was Pain (SF36). Yearly increase in indirect costs remains below €3,000 in those reaching ASDAS-CRP <b>&lt;</b> 2.1. <b>Conclusions</b>: Low disease activity measured by ASDAS-CRP ≤ 2.1 should be used to measure the outcome of new anti-TNF therapy. Continuous WI could be decreased through pain management.
DOI: 10.6084/m9.figshare.11172044
title: Is C-reactive protein elevated in obstructive sleep apnea? a systematic review and meta-analysis

description: <b>Purpose:</b> This study examined whether circulating C-reactive protein (CRP) is elevated in obstructive sleep apnoea (OSA) independent of the confounding effects of comorbidities, smoking, body mass index (BMI), age and gender. <b>Methods:</b> A systematic review of the literature was performed using PubMed, Embase and Cochrane databases from 1 January 1997 to 1 November 2017 using the key words obstructive sleep apnoea and C-Reactive protein to identify full text English language studies that compared CRP in adult non-smoking OSA participants without comorbidities and adult healthy non-smoking control participants matched for BMI, age and gender. Data from eligible studies were subjected to meta-analysis using RevMan version 5.3. <b>Results:</b> Five studies (219 OSA participants, 116 controls) met the selection criteria. The total standard mean difference for circulating high sensitivity CRP was 0.61 mg/dL higher in OSA participants than in control participants (confidence interval: 0.38 to 0.84, <i>p</i> p = 0.16, <i>I<sup>2</sup></i> = 33%) and minimal evidence of publication bias. <b>Conclusions</b>: CRP levels in non-smoking OSA participants without comorbidities were increased relative to levels in healthy matched non-smoking control participants, suggesting that pharyngeal or systemic inflammatory effects attributable to OSA may elevate CRP.