cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/zxb5vhjrf5
title: Proteomic datasets of milk extracellular vesicles obtained from bovine leukemia virus-infected cattle

description: These datasets contain the identified proteins in milk extracellular vesicles from bovine leukemia virus-infected cattle by using a comprehensive proteomic analysis nanoLC-MS/MS method.
DOI: 10.17632/9ycf23xp48
title: Data for On the critical state characteristics of methane hydrate-bearing sediments

description: Data for On the critical state characteristics of methane hydrate-bearing sediments
DOI: 10.17632/jmwxtrkj5x
title: Introduction of glycine synthase enables uptake of exogenous formate and strongly impacts the metabolism in Clostridium pasteurianum

description: This data repository contains analytical data for the following submitted publication: Hong Y., Arbter, P., Wang, W., Navarro Rojas, L., Zeng, A.-P., 2020. Introduction of glycine synthase enables uptake of exogenous formate and strongly impacts the metabolism in Clostridium pasteurianum. The following datasets contain all analytical data for each cultivation experiments used for the characterization of Clostridium pasteurianum R525 glycine synthase mutant (GCSY1) in comparison with the wildtype Clostridium pasteurianum R525 (WT) strain.
DOI: 10.17632/gd8nxrt8z9
title: Novel epoxy-tiglianes stimulate skin keratinocyte wound healing responses and re-epithelialization via protein kinase C activation (Supplementary Data)

description: Epoxy-tiglianes are a novel class of diterpene esters isolated from a native Australian rainforest plant, Fontainea picrosperma (Euphorbiaceae). The prototype epoxy-tigliane, EBC-46 (tigilanol tiglate), possesses potent anti-cancer properties and is currently under clinical evaluation as a treatment for cutaneous and subcutaneous tumors in humans and domesticated animals. EBC-46 also stimulates exceptional dermal wound healing in vivo upon tumor destruction, manifested as accelerated wound re-epithelialization and closure. However, little is known how epoxy-tiglianes induce such favorable epithelial wound healing outcomes. The data presented provides supplementary information to our manuscript, demonstrating the stimulatory effects of EBC-46 and analogue, EBC-211, on the proliferative and migratory responses of human keratinocytes. Specifically, the data shows 1) The effects of both epoxy-tiglianes on the stimulation of accelerated cell cycle progression (assessed by Draq5 staining and Flow Cytometry analysis), 2) The effects of EBC-46 and EBC-211 on enhanced scratch wound repopulation (automated Time-Lapse Confocal Microscopy movies), in addition to epoxy-tigliane scratch wound movies in the absence and presence of anti-proliferative agent, mitomycin C (MC) and pan-protein kinase C (PKC) inhibitor, bisindolylmaleimide-1 (BIM-1). 3) We further provide Tables reporting the findings of Microarray analyses on the keratin (KRT); DNA synthesis/replication; cell cycle, proliferation and apoptosis; adhesion/migration; differentiation; proteinase; and cytokine/chemokine genes differentially expressed by EBC-46 and EBC-211, to facilitate enhanced keratinocytes wound healing responses. 4) Although differentially expressed genes of interest shown to be significantly different at the protein level are included in the main manuscript (by Western blotting and ImageJ densitometry), non-significant differences in Western blot protein profiles between untreated and epoxy-tigliane-treated keratinocytes are shown here.
DOI: 10.17632/grshntcjrb
title: Lysosomal recycling of amino acids through LAAT-1 impacts ER quality control.
DOI: 10.17632/yrm5sgr74v
title: Data for: "Geochemical signatures of acidic drainage recorded in estuarine sediments after an extreme drought"

description: This dataset contains sedimentological and geochemical data for 43 surficial sediments sampled from Lake Albert, South Australia (-35.6, 139.3); one of the two 'Lower Lakes' that constitute the River Murray Estuary. Specifically, this dataset includes laser diffraction grain-size data (43 samples; Malvern Mastersizer 2000), loss-on-ignition data (43 samples), near-total (aqua regia digestion) concentrations for elements Al, S, V, Cr, Mn, Fe, Co, Ni, Cu, Pb and the REEs (43 samples), sequential extraction data for elements Al, V, Cr, Mn, Fe, Co, Ni, Cu, Pb and the REEs (27 sandy silt samples (subset of collected samples)), and Fe(II)/Fe(III) data (26 sandy silt samples). Al, V, Pb, and the REEs were analysed in all extracts using inductively coupled plasma mass spectrometry (ICP-MS; Perkin-Elmer NexION 350X), while S, Cr, Mn, Fe, Co, Ni, and Cu were analysed using inductively coupled plasma optical emission spectrometry (ICP-OES; Varian 720-ES). All geochemical data is in ppb units. This dataset accompanies the paper: Job, T., Penny, D., Morgan, B., 2020. Geochemical signatures of acidic drainage recorded in estuarine sediments after an extreme drought. Sci. Total Environ. 749, 141435. https://doi.org/https://doi.org/10.1016/j.scitotenv.2020.141435
DOI: 10.17632/2wydsz423p
title: Data for: Eco-environmental risk-based hydro-economic evaluation for alluvial groundwater management in arid river basin

description: Change of surface area and evaporation of terminal lake; Changes of NDVI with depth to groundwater table
DOI: 10.17632/sxmcj8ghk8
title: Data for: The extent of center-surround inhibition for colored items in working memory

description: Data for three experiments
DOI: 10.17632/hjywmmp7cr
title: Acetylation-dependent deubiquitinase OTUD3 controls MAVS activation in innate antiviral immunity

description: Accurate regulation of innate immunity is necessary for the host to efficiently respond to invading pathogen and avoid excessive harmful immune pathology. Here we identified OTUD3 as an acetylation-dependent deubiquitinase that restricts innate antiviral immune signaling. OTUD3 deficiency in mice results in enhanced innate immunity, a diminished viral load, and morbidity. OTUD3 directly hydrolyzes K63-linked poly-ubiquitination of MAVS and thus shuts off innate antiviral immune response. Notably, the catalytic activity of OTUD3 relies on acetylation of its lysine129 residue. In response to virus infection, the acetylated lysine129 is removed by SIRT1, which promptly inactivates OTUD3 and thus allows timely induction of innate antiviral immunity. Importantly, acetyl-OTUD3 levels are inversely correlated with IFN-beta expression in influenza patients. These findings establish OTUD3 as a repressor of MAVS and uncover a previously unknown regulatory mechanism via which the catalytic activity of OTUD3 is tightly controlled to ensure timely activation of antiviral defense.
DOI: 10.17632/63n4mxv2kr
title: Dataset of the meta-analysis on seasonality of polymyalgia rheumatica and giant cell arteritis onset

description: Onset symptoms of polymyalgia rheumatica (PMR) and giant cell arteritis (GCA) were collected through relevant papers found in the scientific literature. Since we wanted to determine whether there is a seasonal aggregation for these disorders, only papers reporting semestral, seasonal or monthly onset symptoms were included in the meta-analysis. Data were organized in hierarchical order yielding 9 tables, which first considered both diseases together, and then each disease separately, in relationship to the times of the year divided as 6-month periods, seasons or months. Meta-analysis of incidence variations with semester, season, or month was performed on the natural logarithm of IRRs, which was calculated, for each comparison, as a ratio between the cold period versus the warm period. The main meta-analysis regarded the comparison between the warm and cold semesters in all PMR and GCA patients considered. Secondary meta-analyses regarded any other possible combination. Fixed and random effects meta-analysis weighed by the inverse variance were also performed and the results were graphically represented as forest plots. Heterogeneity was determined by Cochrane’s Q and the I2 statistic while publication bias was assessed by funnel plots and Egger tests. Different sensitivity analyses were performed with the evaluation of pooled data obtained by repeating the meta-analyses after removing one paper at a time. This process was performed to observe whether disproportionate studies could have a disproportionate influence on the result of the meta-analysis. All statistical analyses were performed using R version 3.5. The meta package (version 4.9) was used to produce the pooled estimates and forest plots.
DOI: 10.17632/wjshy9hp7z
title: Dataset for paper “A Bone-Wise Kinematics Approach for Modeling the Human Hind-MidFoot. Part I: Kinematics.”

description: This document completes the title paper. Sections 1–3 include additional graphical and analytical information about our modelling choices; Sections 5– 7 detail the related mathematical developments; the final Section 8 serves to delineate the incremental problem to be solved if interested to find the path of the hind+mid foot chain on its configuration manifold.
DOI: 10.17632/xfn6mytcw7
title: Data for: Effect of hydrothermal fluids on the ultra-deep Ordovician carbonate rocks in Tarim Basin, China

description: Data for REE and fluid inclusions.
DOI: 10.17632/ckwj4tcgxh
title: Data for: Occurrence and Origin of Groundwater Methane in the Stellarton Basin, Nova Scotia

description: This is the master dataset from our study which includes dissolved gas concentrations and geochemical parameters from water and coal samples collected.
DOI: 10.17632/fmy59kkykn
title: An electroweak Monte Carlo for four-fermion production

description: Abstract An electroweak event generator for the four-fermion production process e^+ e^-→ ffFF is described. This generator, FERMISV, includes all the lowest-order diagrams involving Z and photon propagators. It uses multichannel phase space methods to map the very many peaks of the differential cross section. A leading-log approach to initial- and final-state radiation has been included to make FERMISV useful for phenomenology in the range 20 GeV &lt; √s &lt; 200 GeV, where √s is the center-of-mass energy... Title of program: FERMISV Catalogue Id: ACLR_v1_0 Nature of problem Cross section and event generator for e+e- -&gt; ffbarFFbar Versions of this program held in the CPC repository in Mendeley Data ACLR_v1_0; FERMISV; 10.1016/0010-4655(93)90175-C This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/j4np58bh3h
title: Supplementary appendix of Late Paleozoic tectonic evolution of the Kangguer Shear Zone and Yamansu Arc Belt, Eastern Tianshan (NW China): constraints from structure, petrogenesis and geochronology of granitoids

description: Supplementary appendix
DOI: 10.17632/ppfy9yjstt
title: Research Article- Role of Fe(II)/(III), Cu(II), and Zn(II) in Alzheimer's Disease Pathogenesis-The case for a metal-mediated tau aggregation

description: Tau protein aggregation and its hyperphosphorylation play an important role in the pathogenesis of Alzheimer's disease. There is also considerable evidence for the accumulation of Fe(II)/(III), Cu(II), and Zn(II) in the brain of Alzheimer's patients, although their involvement in the etiology of the disease remains unknown. Here, interactions of the 3d metal ions Fe(II)/(III), Cu(II), and Zn(II) with the longest isoform of the human tau protein (htau40) are studied in detail. Electrospray mass spectrometry and ion mobility mass spectrometry analyses confirm the interactions of metal species with tau and that these interactions cause structural changes. Phosphorylation of the full-length htau40 with glycogen synthase kinase 3β (GSK3β), a protein kinase, causes a reduction in metal interactions. Transmission electron microscopy studies of the tau aggregates formed in the presence of metal ions suggest that the presence of metal ions influences the aggregation process. Fluorescence studies of full-length htau40 in the presence of Cu(II) indicate the formation of reactive oxygen species, which may contribute further to oxidative stress and neuronal death. References: (1) Ahmadi, S.; Zhu, S.; Sharma, R.; Wu, B.; Soong, R.; Majumdar, R. D.; Wilson, D. J.; Simpson, A. J.; Kraatz, H.-B. Aggregation of Microtubule Binding Repeats of Tau Protein Is Promoted by Cu2+. ACS Omega 2019, 4 (3), 5356–5366. https://doi.org/10.1021/acsomega.8b03595. (2) Ahmadi, S.; Wu, B.; Song, R.; Zhu, S.; Simpson, A.; Wilson, D. J.; Kraatz, H. B. Exploring the Interactions of Iron and Zinc with the Microtubule Binding Repeats R1 and R4. J. Inorg. Biochem. 2020, 205, 110987. https://doi.org/10.1016/j.jinorgbio.2019.110987. (3) Ahmadi, S.; Ebralidze, I. I.; She, Z.; Kraatz, H.-B. Electrochemical Studies of Tau Protein-Iron Interactions—Potential Implications for Alzheimer’s Disease. Electrochim. Acta 2017, 236, 384–393. https://doi.org/10.1016/j.electacta.2017.03.175.
DOI: 10.17632/ts5syfw38r
title: Credit41_In_Lab_Evolution

description: Different strains of Saccharomyces cerevisiae were treated with Credit41, then isolated and sequenced. Whole genome sequencing of GSY147(S288c backgroud), YJM789, AWRI1631 and RM11, grown in YPD, YM or YM supplemented with WYF, treated or not with Cr41, using Illumina Miseq. The cells were grown for 6 passages, then screened for resistance. A single colony of resistant cells was used for genomic DNA extraction using phenol-chloroform method (Hirt, 1967). The library was built using Quanta-bio sparq DNA frag and library kit and sequenced on an Illumina Miseq platform. Basecalls performed with Illumina’s FASTQ Generation (v1.0.0) available in BaseSpace. The data for all strains was then aligned to S288c reference (release R64-2-1) by creating an index using GATK-4.1.1.0. The GATK HaplotypeCaller was used to generate the vcf files.
DOI: 10.17632/7df5cp8dsf
title: Управление структурой капитала компаний с государственным участием

description: Данные для магистерской диссертации Андриановой Екатерины Игоревны
DOI: 10.17632/chp2c4ssc3
title: Data for: Development of a 32-channel Beam Emission Spectroscopy diagnostic based on Neutral Beam Injection on HL-2A tokamak

description: raw data of Channel 05 "bes05"and time signal "t" for shot 35392 on HL-2A.
DOI: 10.17632/fr4938dvb8
title: Data on Developing learning materials on learning evaluation courses for elementary school in Indonesian

description: The data presented in this article is to examine the product development of teaching materials used in learning evaluation courses on students in elementary school education study programs in Indonesian private institutions. The research activities were carried out at Kuningan University, West Java, Indonesia. The total population of students elementary school on an education study program in the learning evaluation course was 108 students in classes A, B, C. This research uses the entire population to see the feasibility and effectiveness of learning material development products. The research method used is research and development developed by Borg & Gall. Moreover, the researcher modifies the development model by paying attention to the process of developing learning products and validating development products. Feasibility analysis and validation were carried out by learning evaluation experts using descriptive statistical analysis techniques, data analysis techniques to determine the effectiveness of pre-test and post-test using normalized gain score or normalized gain score
DOI: 10.17632/bptgvv46dy
title: Dataset of the article: Influence of Calcium Perchlorate on Organics under SAM-like Pyrolysis Conditions: Constraints on the Nature of Martian Organics

description: EGA and GC-MS data in support of the article: Influence of Calcium Perchlorate on Organics under SAM-like Pyrolysis Conditions: Constraints on the Nature of Martian Organics
DOI: 10.17632/d6f6j5r6z9
title: Raw data - The Structural Versatility of the BTB Domains of KCTD Proteins and Their Recognition of the GABAB Receptor

description: Research data
DOI: 10.17632/r7nf4s5s3v
title: Explicit formulae of angular momentum coupling coefficients

description: Abstract A program has been developed to generate algebraic formulae of the coupling coefficients of angular momenta. The algebraic programming system REDUCE version 3.3 is used for programming. The program consists of several REDUCE prefix operators. They carry out symbolic reductions of Clebsch-Gordan coefficients, Racah coefficients, X-coefficients, and related coefficients. Both variables and values of angular momentum can be their arguments. The program allows one to use these operators in the sa... Title of program: ANALG Catalogue Id: ACJV_v1_0 Nature of problem The program allows us algebraic reductions of Wigner's formula for Clebsch-Gordan coefficients and Racah's formula for Racah coefficients. With use of these two formulae, the program gives explicit algebraic expressions for Clebsch-Gordan coefficients, Racah coefficients, the X-coefficients, and other related coupling coefficients of angular momenta. The program contains several operators and each of them returns a coefficient accepting both values and variables of angular momentum as their argu ... Versions of this program held in the CPC repository in Mendeley Data ACJV_v1_0; ANALG; 10.1016/0010-4655(92)90147-Q This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/w5dn4wp2fj
title: Data for: Influence of human population on distribution patterns of habitat suitability of triatomine vectors of Chagas disease

description: Data of Species Distribution Models (implemented with Maxent) for triatomine species, vectors of Chagas Disease in Brazil. Two models were implemented: SDMclim, which is a model of the Grinellian niche of the species; and a SDMhuman, which is a model accounting for human influence with triatomines.
DOI: 10.17632/mt928nz5r3
title: Kω - Open-source library for the shifted Krylov subspace method of the form (zI - H)x = b

description: We develop Kω, an open-source linear algebra library for the shifted Krylov subspace methods. The methods solve a set of shifted linear equations (z_k I - H)x^(k) = b (k = 0, 1, 2, ...) for a given matrix H and a vector b, simultaneously. The leading order of the operational cost is the same as that for a single equation. The shift invariance of the Krylov subspace is the mathematical foundation of the shifted Krylov subspace methods. Applications in materials science are presented to demonstrate the advantages of the algorithm over the standard Krylov subspace methods such as the Lanczos method. We introduce benchmark calculations of (i) an excited (optical) spectrum and (ii) intermediate eigenvalues by the contour integral on the complex plane. In combination with the quantum lattice solver HΦ, Kω can realize parallel computation of excitation spectra and intermediate eigenvalues for various quantum lattice models.
DOI: 10.17632/nzstc9nnck
title: Data for: The age of the Tashinga Formation (Karoo Supergroup) in the Mid-Zambezi Basin, Zimbabwe and the first phytosaur from sub-Saharan Africa

description: 1. Dates obtained from detrital zircons, obtained from the Tashinga Formation of the Lake Kariba shoreline, Zimbabwe. 2. 3D photogrammetric model of a partial phytosaur snout from the Tashinga Formation of the Lake Kariba shoreline, Zimbabwe. 3. Supplementary information on the palaeontology of the Tashinga Formation of the Lake Kariba shoreline, Zimbabwe.
DOI: 10.17632/n829fpnc8j
title: Data for: Analysis of multiple cosmogenic nuclides constrains Laurentide Ice Sheet history and process on Mt. Mansfield, Vermont’s highest peak

description: Research data associated with "Analysis of multiple cosmogenic nuclides constrains Laurentide Ice Sheet history and process on Mt. Mansfield, Vermont’s highest peak" by Corbett et al.
DOI: 10.17632/5w936rthzg
title: Metabolomic changes after coffee consumption: new paths on the block

description: Urine metabolomics data matrices. Data were acquired using ACQUITY I-Class UPLC separation system coupled to a VION IMS QTOF mass spectrometer (Waters, Wilmslow, UK) equipped with an electrospray ionization (ESI) interface. Further details can be found in the manuscript "Metabolomic changes after coffee consumption: new paths on the block ".
DOI: 10.17632/bnr8yypvsb
title: Images used for the validation of the effectiveness of HVSA (High-visibility safety apparel)

description: Includes the 45 images used in the tests for the validatation of a new methodology for determining effective colors for high-visibility safety. The validation dataset consisted of 3 sets of 15 images. Each set depicted a different construction project. Photographs in Set A depict different stages of a short offshore removal operation. A barge is fitted with a lifting tower and sails at an offshore platform where six fenders are lifted and transported to the shore. Set B includes pictures from a fabrication hall where heavy steel structures are fabricated. Set C consist of photographs from the transport and installation of foundation structures for offshore wind turbines. Ground-truth bounding boxes have been included to show the location of workers
DOI: 10.17632/ph7tf2y7k3
title: Huijing Wang's Data

description: These are supplementary materials for "Characteristics, treatments, and outcomes of Chinese Patients with Giant Congenital Melanocytic Nevus: A Retrospective Cohort Study".
DOI: 10.17632/3yw92trsy5
title: A bi-level decomposition algorithm for multi-factory scheduling with batch delivery problem

description: we present “Test problem of loose duedate” and “Test problem of tight duedate” folders to clarify the data used to generate test instances for comparison of BLDAs algorithms. Data sets are provided in excel format in two folders of zip format. The parameters of each problem, i.e. case I, case II, case III, case IV and case V are named separately in different excel files as below. This parameters are described in section 3, including Capacity of batch, Delivery cost, Demand quantity, Duedate, Holding cost, Processing times, Routes indicators, Tardy cost, Transportation cost, Volume of each unit of job
DOI: 10.17632/r2wjwkydrt
title: Supplemental Results

description: Supplemental figures and tables for our study
DOI: 10.17632/7pc5dk7mfk
title: Saquinavir solubility study

description: The solubility study of a substance provides important information for the choice of the most suitable solvent for analytical uses, as well as in the choice of the most suitable vehicle for use in in vitro / in vivo tests. The study of the saquinavir solubility has applications in different experiments such as drug release study, dissolution studies and also for preformulation studies. With this, the present study aimed to evaluate the solubility of saquinavir in different media with diverse polarities.
DOI: 10.17632/dg8wm59nd3
title: Ms

description: Method validation data for a UPLC-MS/MS method for simultaneous quantification of aspirin, its metabolite salicylic acid, and salvianolic acid B in human plasma.
DOI: 10.17632/vhyct7dfms
title: Precambrian Zircons in Chromitites of the Cretaceous Aladag Ophiolite (Turkey) Indicate Deep Crustal Recycling in the Neotethyan Oceanic Mantle

description: These data are geochronological results, oxygen and hafnium isotopic compositions of the zircons recovered from the Aladag chromitite in southeastern Turkey.
DOI: 10.17632/gjztsc4fv3
title: Data for: Slab breakoff beneath the northern Yangtze Block: implications from the ~870 Ma MORB-like Dahongshan mafic intrusion

description: Geochemistry and Sr-Nd-Pb isotopes of the Dahongshan mafic rocks in the northern Yangtze Block
DOI: 10.17632/ky9748syf9
title: Data for: Competitiveness of Mexican pension funds and implications for regulatory policy
DOI: 10.17632/8nwzjn24jc
title: Fatty acids data for tree shrimps species in Brazil