cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/1049-7f85
title: Computationally derived electrical properties of thyroid and parathyroid tissues structures

description: The presented dataset comprises the electrical conductivity and relative permittivity data derived from the lower-scale model simulations as a part of multiscale computational modelling of electrical properties of thyroid and parathyroid tissues, which relates to the paper 'Multiscale Model Development for Electrical Properties of Thyroid and Parathyroid Tissues' submitted to IEEE Open Journal of Engineering in Medicine and Biology. The paper abstract: Goal: Electrical impedance spectroscopy (EIS) has been suggested as a possible technique to differentiate between thyroid and parathyroid tissues during surgery. This study aims to explore this potential using computational models to simulate the impedance spectra of these tissues, and examine how they are influenced by specific differences in tissue composition and morphology. Materials and Methods: Finite element models of thyroid and parathyroid tissue at multiple scales were created, and simulated spectra were compared to existing data collected using ZedScan probe during surgery. Geometrical and material properties were varied in a local sensitivity study to assess their relative influence. Results: Both simulated and measured EIS parathyroid spectra show a higher beta dispersion frequency relative to thyroid. However, impedances exhibit overlap at frequencies below 100 kHz. A computational sensitivity study identified uncertainties in extracellular space dimensions, and properties of colloid and fascia compartments as having a significant effect on simulated impedance spectra characteristics.  Conclusions: We have demonstrated the utility of our multiscale model in simulating impedance spectra and providing insight into their sensitivity to variations in tissue features. Our results suggest that distinguishing between the thyroid and parathyroid spectra is challenging, but could be improved by constraining the properties of colloid and fascia through further computational or experimental research.
DOI: 10.34740/kaggle/dsv/5662224
title: YouTube Daily
DOI: 10.48366/r589181
title: Summary of COVID-19 KGs

description: This comparison provides summary of COVID-19 knowledge graphs.
DOI: 10.6084/m9.figshare.22800686
title: Data by MS and ER.xlsx

description: In order to understand the impacts of repeated acute stress and brain serotonin on behavioral adaptations of divergent phenotypes of the olive flounder, <em>Paralichthys olivaceus</em>, we first determined the effect of 5-HT suppression and repeated acute stress on physiological and behavioral changes in bold and shy <em>P. olivaceus</em> separately. Secondly, we measured the effect of 5-HT suppression on repeated acute stress in bold and shy <em>P. olivaceus</em>. Subsequently, we determined the effect of 5-HT and 5-HT1A antagonist WAY-100635 on the activity of Dahlgren cells. Lastly, we determined the effect of 5-HT on the relative expression of 5-HT1A and CRH mRNA in CNSS. All experimental protocols were approved by the Institutional Animal Care and Use Committee (IACUC) of Shanghai Ocean University (Shanghai, China) and in compliance with the Guidelines on Ethical Treatment of Experimental Animals established by the Ministry of Science and Technology, China.
DOI: 10.6084/m9.figshare.22800686.v1
title: Data by MS and ER.xlsx

description: In order to understand the impacts of repeated acute stress and brain serotonin on behavioral adaptations of divergent phenotypes of the olive flounder, <em>Paralichthys olivaceus</em>, we first determined the effect of 5-HT suppression and repeated acute stress on physiological and behavioral changes in bold and shy <em>P. olivaceus</em> separately. Secondly, we measured the effect of 5-HT suppression on repeated acute stress in bold and shy <em>P. olivaceus</em>. Subsequently, we determined the effect of 5-HT and 5-HT1A antagonist WAY-100635 on the activity of Dahlgren cells. Lastly, we determined the effect of 5-HT on the relative expression of 5-HT1A and CRH mRNA in CNSS. All experimental protocols were approved by the Institutional Animal Care and Use Committee (IACUC) of Shanghai Ocean University (Shanghai, China) and in compliance with the Guidelines on Ethical Treatment of Experimental Animals established by the Ministry of Science and Technology, China.
DOI: 10.17031/644a480006518
title: 2010-2011 Natural England (NE) Snettisham, lagoon water quality monitoring
title: Natural England Survey and assessment of saline lagoons at Snettisham, Norfolk

description: Part of the Snettisham Lagoons monitoring programme. The data here was sampled on 22nd July 2010 and include both species and water quality data.
DOI: 10.5281/zenodo.7330344
title: Glacier Lake Outburst Flood Database

description: This dataset is an inventory of globally occurred Glacier Lake Outburst Floods (GLOFs). Our database encompasses data from 769 different sources including satellite and aerial images, reports from local authorities, scientific publications, news outlets, workshop proceedings, social media posts, and unpublished work. <strong>Files: </strong><br> <em>glofdatabase_V3.ods</em>: Database spreadsheet (OpenOffice file) containing all reported GLOFs.<br> <em>Parameter_Readme.ods:</em> Readme file describing all database parameters (i.e. columns in glofdatabase_V3.ods) and their units. Our database is an ongoing project and we offer a web-based, interactive map that grants access to the most recent state of the database (http://glofs.geoecology.uni-potsdam.de). Users can also download all previous versions of the database from this interface.
DOI: 10.5281/zenodo.7330345
title: Glacier Lake Outburst Flood Database V3.0

description: This dataset is an inventory of globally occurred Glacier Lake Outburst Floods (GLOFs). Our database encompasses data from 769 different sources including satellite and aerial images, reports from local authorities, scientific publications, news outlets, workshop proceedings, social media posts, and unpublished work. <strong>Files: </strong><br> <em>glofdatabase_V3.ods</em>: Database spreadsheet (OpenOffice file) containing all reported GLOFs.<br> <em>Parameter_Readme.ods:</em> Readme file describing all database parameters (i.e. columns in glofdatabase_V3.ods) and their units. Our database is an ongoing project and we offer a web-based, interactive map that grants access to the most recent state of the database (http://glofs.geoecology.uni-potsdam.de). Users can also download all previous versions of the database from this interface.
DOI: 10.5281/zenodo.7924369
title: Glacier Lake Outburst Flood Database

description: This dataset is an inventory of globally occurred Glacier Lake Outburst Floods (GLOFs). Our database encompasses data from 769 different sources including satellite and aerial images, reports from local authorities, scientific publications, news outlets, workshop proceedings, social media posts, and unpublished work. <strong>Files: </strong><br> <em>glofdatabase_V3.ods</em>: Database spreadsheet (OpenOffice file) containing all reported GLOFs.<br> <em>Parameter_Readme.ods:</em> Readme file describing all database parameters (i.e. columns in glofdatabase_V3.ods) and their units. Our database is an ongoing project and we offer a web-based, interactive map that grants access to the most recent state of the database (http://glofs.geoecology.uni-potsdam.de). Users can also download all previous versions of the database from this interface.
DOI: 10.5517/ccdc.csd.cc26yz8f
title: CCDC 2054595: Experimental Crystal Structure Determination

description: Related Article: Benny Wahyudianto, Kento Imanishi, Tatsuhiro Kojima, Nobuto Yoshinari, Takumi Konno|2021|Chem.Commun.|57|6090|doi:10.1039/D1CC02219A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2clvys
title: CCDC 2192876: Experimental Crystal Structure Determination

description: Related Article: Toshiki Fujii, Takahiro Kusukawa, Hiroaki Imoto, Kensuke Naka|2023|Chem.-Eur.J.|29|e202202572|doi:10.1002/chem.202202572
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnn4v
title: CCDC 2194587: Experimental Crystal Structure Determination

description: Related Article: Jacopo Perego, Charl X. Bezuidenhout, Silvia Bracco, Sergio Piva, Giacomo Prando, Cristian Aloisi, Pietro Carretta, Jiří Kaleta, Thi Phuong Le, Piero Sozzani, Andrea Daolio, Angiolina Comotti|2023|Angew.Chem.,Int.Ed.|62|e202215893|doi:10.1002/anie.202215893
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnn5w
title: CCDC 2194588: Experimental Crystal Structure Determination

description: Related Article: Jacopo Perego, Charl X. Bezuidenhout, Silvia Bracco, Sergio Piva, Giacomo Prando, Cristian Aloisi, Pietro Carretta, Jiří Kaleta, Thi Phuong Le, Piero Sozzani, Andrea Daolio, Angiolina Comotti|2023|Angew.Chem.,Int.Ed.|62|e202215893|doi:10.1002/anie.202215893
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnn7y
title: CCDC 2194590: Experimental Crystal Structure Determination

description: Related Article: Jacopo Perego, Charl X. Bezuidenhout, Silvia Bracco, Sergio Piva, Giacomo Prando, Cristian Aloisi, Pietro Carretta, Jiří Kaleta, Thi Phuong Le, Piero Sozzani, Andrea Daolio, Angiolina Comotti|2023|Angew.Chem.,Int.Ed.|62|e202215893|doi:10.1002/anie.202215893
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnn8z
title: CCDC 2194591: Experimental Crystal Structure Determination

description: Related Article: Jacopo Perego, Charl X. Bezuidenhout, Silvia Bracco, Sergio Piva, Giacomo Prando, Cristian Aloisi, Pietro Carretta, Jiří Kaleta, Thi Phuong Le, Piero Sozzani, Andrea Daolio, Angiolina Comotti|2023|Angew.Chem.,Int.Ed.|62|e202215893|doi:10.1002/anie.202215893
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnn90
title: CCDC 2194592: Experimental Crystal Structure Determination

description: Related Article: Jacopo Perego, Charl X. Bezuidenhout, Silvia Bracco, Sergio Piva, Giacomo Prando, Cristian Aloisi, Pietro Carretta, Jiří Kaleta, Thi Phuong Le, Piero Sozzani, Andrea Daolio, Angiolina Comotti|2023|Angew.Chem.,Int.Ed.|62|e202215893|doi:10.1002/anie.202215893
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnnb1
title: CCDC 2194593: Experimental Crystal Structure Determination

description: Related Article: Jacopo Perego, Charl X. Bezuidenhout, Silvia Bracco, Sergio Piva, Giacomo Prando, Cristian Aloisi, Pietro Carretta, Jiří Kaleta, Thi Phuong Le, Piero Sozzani, Andrea Daolio, Angiolina Comotti|2023|Angew.Chem.,Int.Ed.|62|e202215893|doi:10.1002/anie.202215893
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7902855
title: Role of the Maritime Continent in the remote influence of Atlantic Niño on the Pacific

description: This repository provides the source data to generate the figures in this study. For more details, please see: Liu, S., Chang, P., Wan, X., Richter I. <em>et al.</em> Role of the Maritime Continent in the remote influence of Atlantic Niño on the Pacific. <em>Nat Commun</em> (2023). Within the zipped folder named Source Data, the relevant raw data from each figure (in the main manuscript and Supplementary Information) are represented by a single Excel document. The Readme.txt file provides a detailed description of the format of the raw data. If there is any problem solving with the data, please contact with S.L. (liusiying@stu.ouc.edu.cn). Thank you!
DOI: 10.5281/zenodo.7902854
title: Role of the Maritime Continent in the remote influence of Atlantic Niño on the Pacific

description: This repository provides the source data to generate the figures in this study. For more details, please see: Liu, S., Chang, P., Wan, X., Richter I. <em>et al.</em> Role of the Maritime Continent in the remote influence of Atlantic Niño on the Pacific. <em>Nat Commun</em> (2023). Within the zipped folder named Source Data, the relevant raw data from each figure (in the main manuscript and Supplementary Information) are represented by a single Excel document. The Readme.txt file provides a detailed description of the format of the raw data. If there is any problem solving with the data, please contact with S.L. (liusiying@stu.ouc.edu.cn). Thank you!
DOI: 10.21954/ou.rd.22794203
title: PhDMentalHealth_UKDataset

description: The dataset includes anonymised data about 1780 UK-based PhD students' wellbeing during the Covid-19 pandemic. In particular, it includes data about their depression levels (Patient Health Questionnaire depression scale) and coping behaviours (Brief Cope Inventory).
DOI: 10.21954/ou.rd.22794203.v1
title: PhDMentalHealth_UKDataset

description: The dataset includes anonymised data about 1780 UK-based PhD students' wellbeing during the Covid-19 pandemic. In particular, it includes data about their depression levels (Patient Health Questionnaire depression scale) and coping behaviours (Brief Cope Inventory).
DOI: 10.5519/qd.kufphejx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.6516963
title: Agilent v7 NA12878 VCF files

description: Agilent v7 VCF files generated for the NGS-CN benchmarking with the development nextflow exomme pipeline version of the CCG.
DOI: 10.5281/zenodo.6516962
title: Agilent v7 NA12878 VCF files

description: Agilent v7 VCF files generated for the NGS-CN benchmarking with the development nextflow exomme pipeline version of the CCG.
DOI: 10.5281/zenodo.7913253
title: Novel metagenome assembled genomes (MAGs) that best represent novel species level taxa within the phylum Chloroflexota

description: 1280 Chloroflexita MAGs from the study "Taxonomic re-classification and expansion of the phylum Chloroflexota based on over 5000 genomes and metagenome-assembled genomes". Only MAGs that improved the representation of a species-level genome cluster within the phylum <em>Chloroflexota</em> were included in this deposition. Most of these MAGs were assembled from publicly availabe metagenome sequence data obtained from the NCBI sra database. An overview of the here deposited MAGs can be found in Zenodo_deposited_MAGS_overview.xlsx, for more details please refer to the abive mentioned publication. MAG assemblies are deposited as gzip compressed tar.archive. Three tar.gz archives have been deposited, containing the same MAG assemblies but sorted by different criteria: All MAGs sorted by category of the source environment All MAGs sorted by class designation All MAGs sorted by MIMAG quality (high or moderate)
DOI: 10.5281/zenodo.7913252
title: Novel metagenome assembled genomes (MAGs) that best represent novel species level taxa within the phylum Chloroflexota

description: 1280 Chloroflexita MAGs from the study "Taxonomic re-classification and expansion of the phylum Chloroflexota based on over 5000 genomes and metagenome-assembled genomes". Only MAGs that improved the representation of a species-level genome cluster within the phylum <em>Chloroflexota</em> were included in this deposition. Most of these MAGs were assembled from publicly availabe metagenome sequence data obtained from the NCBI sra database. An overview of the here deposited MAGs can be found in Zenodo_deposited_MAGS_overview.xlsx, for more details please refer to the abive mentioned publication. MAG assemblies are deposited as gzip compressed tar.archive. Three tar.gz archives have been deposited, containing the same MAG assemblies but sorted by different criteria: All MAGs sorted by category of the source environment All MAGs sorted by class designation All MAGs sorted by MIMAG quality (high or moderate)
DOI: 10.20387/bonares-22n5-7e72
title: Field traffic GPS records, campaign silage maize 2015/2016, Project SOILAssist

description: In the course of the SOILAssist project, RTK GPS recordings of field cultivation driving activities are continuously performed. The dataset contains the records of the silage corn campaign 2015/2016 of the agricultural test field 1 in Adenstedt (Hildesheim district, Lower Saxony, Germany).
DOI: 10.5523/bris.2siu0761brbd2aprfb1cuw010
title: Experimental Sc-diamond paper

description: Raw data for the paper published in J. Mater. Chem. A (2023) by Ramiz Zulkharnay & Paul May
DOI: 10.6084/m9.figshare.22801346
title: The prevalence of claims under the JBCC Principal Building Agreement in South Africa

description: Raw data and calculated means and deviations.
DOI: 10.6084/m9.figshare.22801346.v1
title: The prevalence of claims under the JBCC Principal Building Agreement in South Africa

description: Raw data and calculated means and deviations.
DOI: 10.34740/kaggle/dsv/5662584
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.5281/zenodo.7698940
title: First Steps towards a Risk of Bias Corpus of Randomized Controlled Trials

description: <strong>Abstract</strong> Risk of bias (RoB) assessment of randomized clinical trials (RCTs) is vital to conducting systematic reviews. Manual RoB assessment for hundreds of RCTs is a cognitively demanding, lengthy process and is prone to subjective judgment. Supervised machine learning (ML) can help to accelerate this process but requires a hand-labelled corpus. There are currently no RoB annotation guidelines for randomized clinical trials or annotated corpora. In this pilot project, we test the practicality of directly using the revised Cochrane RoB 2.0 guidelines for developing an RoB annotated corpus using a novel multi-level annotation scheme. We report inter-annotator agreement among four annotators who used Cochrane RoB 2.0 guidelines. The agreement ranges between 0% for some bias classes and 76% for others. Finally, we discuss the shortcomings of this direct translation of annotation guidelines and scheme and suggest approaches to improve them to obtain an RoB annotated corpus suitable for ML. <strong>Methods</strong> The upload contains two zip files and a .json file. plain.html.zip Original corpus (n = 10) in .html format. The corpus was generated using the methodology described in the paper. Each .html file could be opened in any default text editor in any operating system or browser. A .html contains full text divided into several annotatable text parts. ann.json.zip The .zip contains RoB annotations conducted by the authors (R.H., M.S., K.G., R.C.). The annotation files are in .json format. Each .json is divided into two JSON objects and three JSON arrays. annotatable (object): Parts from the full-text document corresponding to the text parts from the plain .html files. metas (object): full-text document label entities (array): contains labelled entities. Each entity is linked to which part of the full-text it is linked to. relations (array) sources (array) annotations-legend.json This .json file contains entity and entity labels encoded to text legends. For example, entity class label "1_2_Yes_Good" is encoded as "e_113". <strong>Resources</strong> The code to parse annotations can be found on GitHub. <strong>Funding</strong> HES-SO Valais-Wallis, Sierre, Switzerland
description: {"references": ["Dhrangadhariya A et al. First Steps towards a Risk of Bias Corpus of Randomized Controlled Trials. In Proceedings Medical Informatics Europe 2023. Gothenburg, Sweden."]}