cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp3/jnigj9
title: Replication Data and Code for: How Do Exchange Rates Affect Environmental Quality?

description: The data and programs replicate tables and figures from "How Do Exchange Rates Affect Environmental Quality?", by Park and Ridley. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/68qqxs
title: MVSMMP Map 03 Liquefaction Susceptibility

description: MVSMMP Map 03 showing liquefaction susceptibility hazard ratings of western Metro Vancouver, British Columbia, Canada. Accompanying Table lists the liquefaction susceptibility hazard ratings for each Quaternary geology unit.
DOI: 10.5683/sp3/eyddsl
title: ExoPlaSim models for "Climate Transition to Temperate Nightside at High Atmosphere Mass"

description: ExoPlaSim output (.nc), landmap (.sra), and configuration (.cfg) files, and petitRADTRANS transit spectra (.txt), for the simulations from the paper "Water Vapour Transit Ambiguities for Habitable M-Earths."
DOI: 10.5683/sp3/uegacz
title: MVSMMP Map 02 Regional Groundwater Table Depth

description: MVSMMP Map 02 showing depths to the regional groundwater table of western Metro Vancouver. Units are depths in meters.
DOI: 10.5683/sp3/qlyaco
title: Benchmark synthesis

description: A dataset of literature-based and custom neural networks, for the purpose of testing the performance of trained models at predicting the required resources and inference latency on FPGA.
DOI: 10.15468/dl.m5rp8s
title: Occurrence Download

description: A dataset containing 12532 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ehrharta calycina"
 ]
}

 The dataset includes 12532 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046882-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5683/sp3/mosxfc
title: Severe infection incidence among young infants in Dhaka, Bangladesh: an observational cohort study

description: Manuscript data, code, and related materials from the SEPSiS manuscript entitled "Severe infection incidence among young infants in Dhaka, Bangladesh: an observational cohort study"
DOI: 10.5683/sp3/sf2cqm
title: Replication Data for: Surface soil sampling underestimates soil carbon and nitrogen storage of long-term cover cropping

description: In this study, we used a long-term cover cropping experiment with sandy loam soil, under a temperate humid climate. Our previous studies found that SOC stock (0–15 cm depth) was approximately 11–22% greater with than without cover cropping, in 2015 (Chahal et al. 2020). This intrigued us to explore deep soil C and N stores (0–120 cm depth). We also used their distributions between POM and MAOM pools(0–90 cm depth) to better understand the potential mechanisms of C and N storage under long-term cover cropping.
description: RStudio, 2023.12.1+402
DOI: 10.5683/sp3/cqwuvv
title: Lake Huron Stable Isotopes of Salmonids

description: Includes separate files: raw data from SIA at COBSIL (x2 analytical runs), sources, TEFs, and consumers. the final three are formatted separately for use with MixSIAR.
DOI: 10.5683/sp3/x9p8if
title: Influences on Bioaccumulation and Biota - Sediment Accumulation Factors for Methyl-Mercury in High Arctic Lake Food Webs

description: Placeholder
DOI: 10.5683/sp3/lwysyb
title: The origin of pressure resistance in deep-sea lactate dehydrogenase

description: High hydrostatic pressure has a dramatic effect on biochemical systems, as exposure to high pressure can result in structural perturbations ranging from dissociation of protein complexes to complete denaturation. The deep ocean presents an interesting paradox since it is teeming with life despite the high-pressure environment. This is due to evolutionary adaptations in deep-sea organisms, such as amino acid substitutions in their proteins, which aid in resisting the denaturing effects of pressure. However, the physico-chemical mechanism by which these substitutions can induce pressure resistance remains unknown. Here, we use molecular dynamics simulations to study pressure-adapted lactate dehydrogenase from the deep-sea abyssal grenadier (C. armatus), in comparison with that of the shallow-water Atlantic cod (G. morhua). Alchemical thermodynamic integration and the Archimedean Displacement Method were used to determine whether pressure resistance is due to a thermodynamic stabilization of the native state of the protein or to an increase in the volume of the denatured state. We report that the amino acid substitutions destabilize the folded protein, but pressure resistance is achieved through an increase in compressibility for the pressure-adapted protein. This dataset contains input files and run scripts for the alchemical free energy calculations and the volume calculations. See README.txt files within each archive for specific details on how to run and analyze the calculations.
DOI: 10.5683/sp3/n7yxnc
title: Dataset of proteomic analysis of Streptomyces scabies EF-35 in the presence of in vitro-grown potato tubers

description: This study examines changes in the intracellular proteome of Streptomyces scabies, the main causative agent of potato common scab disease. The dataset presents a proteomic analysis performed using electrospray mass spectrometry (ES MS/MS) on the extracted total intracellular protein of S. scabies. The analysis was carried out under three conditions: in the presence of tubers of Russet Burbank and Yukon Gold potato cultivars and in the absence of plant material.
DOI: 10.5683/sp3/re27ic
title: ANHA4-EID002

description: &lt;b&gt;NEMO version: &lt;/b&gt;3.6&lt;br&gt;
&lt;b&gt;LIM version: &lt;/b&gt;LIM2&lt;br&gt;
&lt;b&gt;Atmospheric Forcing:&lt;/b&gt;CGRF&lt;br&gt;
&lt;b&gt;Runoff:&lt;/b&gt;A-HYPE&lt;br&gt;
&lt;b&gt;Open Boundary Condition:&lt;/b&gt;GLORYS2v3&lt;br&gt;
&lt;b&gt;Initial Condition: &lt;/b&gt;GLORYS2v3&lt;br&gt;
&lt;b&gt;Output frequency: &lt;/b&gt;5d&lt;br&gt;
&lt;b&gt;Others: &lt;/b&gt;Tides, VVL, BiGCIIM, Icebergs&lt;br&gt;
DOI: 10.5683/sp3/n7xboj
title: Data for: On the use of kinship and familiarity associated social information in mediating Drosophila melanogaster oviposition decisions

description: &lt;p&gt;Decisions about where to lay one’s eggs are of great importance, as the specific conditions in one’s offspring developmental environment may be critical to their subsequent survival and lifetime reproductive success. Information produced by conspecifics can potentially be useful to an individual’s oviposition decision-making process as this “social information” may provide an energetically cheaper means of assessing site suitability rather than acquiring it personally. However, not all conspecific public information may be equally beneficial, and cues produced by kin may be especially valuable as they might signal uniquely suitable microenvironments, as well as suggesting other fitness advantages resulting from improved foraging success and/or a decreased risk of competition/cannibalism amongst kin compared to sites where unrelated conspecifics are located. Using the fruit fly, Drosophila melanogaster, we explored whether public information use is associated with kin-based egg-laying decisions. Kinship is potentially recognized in several ways, including cues produced by environmentally-associated gut microbiota of the egg-laying flies, and so we also explored whether there were biases in how focal females interacted with cues from individuals that differed in both their genetic relatedness, as well as their environmental “familiarity.” In a series of inter-connected assays, we examined the egg-laying behaviour of females that interacted with a choice of potential egg-laying substrates that differed in the manner of their prior conspecific exposure. Not only do female flies lay more eggs on sites that had cues left behind by conspecifics compared to unexposed substrates, but they also exhibited strong biases in their oviposition patterns that was consistent with being sensitive to the kinship status of the prior substrate occupants. Furthermore, while females did not apparently discriminate between sites differing in prior egg abundance, they did exhibit bias in their egg-laying based on the population of origin of the demonstrator female. The basis of the kinship categorization by ovipositing females appears to be based on phenotypes that reflect true genetic relatedness that are neither mimicked nor disrupted by the conspecific’s developmental environment. These results highlight the potential usefulness of D. melanogaster as a model to understand the evolution of social behaviour in the expression of decision-making.&lt;/p&gt; 
&lt;p&gt;The data here represent behavioural and reproductive data collected in four inter-related experiments (counts of visits, number of offspring). The files are saved in .csv tables.&lt;/p&gt;
DOI: 10.5683/sp3/nbjytm
title: Dataset to accompany manuscript: "Ups and downs of fossorial life: migration restlessness and geotaxis may explain overwintering emergence in the Spotted Salamander"

description: To decide whether to remain underground or to emerge from overwintering, fossorial ectotherms simultaneously process environmental, gravitational, and circannual migratory cues. Here, we provide an experimental framework to study the behaviour of fossorial ectotherms during soil temperature inversion—a phenomenon that marks the transition between winter and spring in the temperate zone—in light of three non-mutually exclusive hypotheses (i.e., thermoregulatory, negative geotaxis, and migration restlessness). Using a vertical thermal gradient mimicking a burrow, we evaluated how temperature selection (Tsel), activity, and vertical position selection differed under simulated soil temperature inversion (contrasting the active vs. overwintering thermal gradients) in the Spotted Salamander (Ambystoma maculatum). Salamanders had different Tsel and activity levels between gradients, but selected similar heights regardless of thermal gradient orientation. Our results suggest that negative geotaxis may explain responses to changes in vertical thermal gradient orientation, with a possible role for migratory restlessness contributing to differences in activity levels. Our work provides behavioural information in an ecologically relevant context, and will benefit those who aim to better understand the biology of fossorial ectotherms.
description: Data attached are to be associated with a manuscript of the same title, supplied on submission.
DOI: 10.5683/sp3/j1njyk
title: Canadian Census Data Inventory, 1666-2021
title: CCDDP Inventory

description: The Canadian Census Data Inventory is a project of the Canadian Census Data Discovery Partnership (CCDDP). &lt;br&gt;&lt;br&gt;The CCDDP project aims to facilitate historical research by reducing the barriers to access and use of Canadian census data. Using the search tab of &lt;a href="https://zacktaylor.shinyapps.io/census_inventory_portal/"&gt;The Census Data Discovery Portal&lt;/a&gt; users can discover historical and contemporary Canadian census materials and data items held by numerous institutions across the country. This dataset contains the original inputted and captured census items and corresponding metadata fields for the inventory tables in English and French including enhanced census terms for finding census data. Additional improvements are being made to the inventory and will be addressed by future infrastructure. 
&lt;br&gt;&lt;br&gt;
Censuses, or population counts, have been conducted in the territory now known as Canada since 1665-66 in New France. Canada’s census is our most valuable primary economic, social, and cultural data set, and is an essential research tool for the formation of new knowledge and understanding about the populations that lived here in the past and present. 
&lt;br&gt;&lt;br&gt;
The sources of information that make up these censuses are rich, diverse, and complex. They consist of databases of archival records, publications, and data files, containing a mix of primary data, expert analyses, and supporting documentation. This project is focused on those sources that contain data, and documentation that supports the use of the data.
&lt;br&gt;
&lt;br&gt;
The CCDDP project is funded by a SSHRC Partnership Development Grant (2021-2024). Key deliverables are inventorying Canada’s historical census data, the design and delivery of this proof-of-concept bilingual discovery portal, and developing a set of recommendations for future work. Please see the project website for the full list of project partners, investigators and collaborators, and join our listserv to receive project updates.
&lt;br&gt;
&lt;br&gt;
Inventory data last updated: 2024-03-31
DOI: 10.5683/sp3/3ctef9
title: Regional differences in leaf evolution facilitate photosynthesis following severe drought

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Characterizing physiological and anatomical changes that underlie rapid evolution following climatic perturbation can broaden our understanding of how climate change is affecting biodiversity. It can also provide evidence of cryptic adaptation despite stasis at higher levels of biological organization.&lt;/p&gt;
&lt;p&gt;Here we compared evolutionary changes in populations of &lt;em&gt;Mimulus cardinalis &lt;/em&gt;from historically different climates in the north and south of the species’ range following an exceptional drought. We grew seeds produced from pre-drought ancestral plants alongside peak-drought descendants in a common greenhouse and exposed them to wet and dry conditions.&lt;/p&gt;
&lt;p&gt;Prior to the drought, northern ancestral populations expressed traits contributing to drought escape, while southern ancestral populations expressed drought avoidance. Following the drought, both regions evolved to reduce water loss and maintain photosynthesis in dry treatments (drought avoidance), but via different anatomical alterations in stomata, trichomes, and palisade mesophyll. Additionally, southern populations lost the ability to take advantage of wet conditions.&lt;/p&gt;
&lt;p&gt;These results reveal rapid evolution towards drought avoidance at an anatomical level following an exceptional drought, but suggest that differences in the mechanisms between regions incur different trade-offs. This sheds light on the importance of characterizing underlying mechanisms for downstream life-history and macromorphological traits.&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;Climate data was collected from ClimateWNA. Seeds of &lt;em&gt;Mimulus cardinalis &lt;/em&gt;(scarlet monkeyflower) were originally field collected prior to a severe drought (2010 and 2011) and during the peak drought (2014 and 2015) that occurred throughout the range . Following a refresher generation, the seeds were grown in a common garden experiment and exposed to either wet or dry treatments. Plants were monitored to maintain a similar drought across all plants. Leaves were sampled with a licor 6800 photosynthetic instrument for physiological traits. The leaves were collected and sectioned to examin leaf cell layers and epidermal peels were made using nail polish to examine leaf surface architecture. Data was directly input into a spreadsheet for anatomical traits. Data from Licor instrument was imported into Excel and cleaned for just the variables of interest using R software.  &lt;/p&gt;
&lt;p&gt;&lt;strong&gt; &lt;/strong&gt;&lt;/p&gt;
description: <b>Dryad version number:</b> 7
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> http://datadryad.org/stash/dataset/doi:10.5061/dryad.x3ffbg7th
<b>Storage size:</b> 318064840
<b>Visibility:</b> public
DOI: 10.5683/sp3/g7ixsu
title: Data for the paper entitled "Influence of initial speciation of platinum and palladium on their accumulation and toxicity towards phytoplankton"

description: This dataset includes the measured variables at different sampling times for the exposures of the green alga R. subcapitata to different Pt and Pd concentrations and different Pt and Pd complexes (internalized Pt and Pd, mean measured Pt and Pd concentrations in the medium and growth inhibition). It also includes spectrophotometric measurements, kinetic modeling data and speciation data covering measured and calculated absorbance spectra at different sampling time and predicted speciation at different sampling point.
DOI: 10.5683/sp3/yeiv5r
title: Sable Island FEFLOW modeling

description: The files in this dataset relate to the data presented in the Environmental Research Letters manuscript Cantelon et al. (2024). See the 'Read me' file for more details.
DOI: 10.5683/sp3/ywgabi
title: Replication Data for: Leopard Geckos

description: Images accompanying "Bone labeling experiments and intraskeletal growth patterns in captive leopard geckos (Eublepharis macularius)"
DOI: 10.5683/sp3/ff6ai9
title: Navigating Stats Can Data & Scrubbing Data Clean with Excel Workshop

description: Ahoy, data enthusiasts! Join us for a hands-on workshop where you will hoist your sails and navigate through the Statistics Canada website, uncovering hidden treasures in the form of data tables. With the wind at your back, you’ll master the art of downloading these invaluable Stats Can datasets while braving the occasional squall of data cleaning challenges using Excel with your trusty captains Vivek and Lucia at the helm.
description: DLI National Training / Formation nationale l’IDD
DOI: 10.5683/sp3/1oaoaw
title: Replication data for: Final report for Neudorff crabgrass trial - Project # G19-07

description: This project compared liquid and dry formulations of Fiesta at varying rates on pre-emergent control of crabgrass and other weeds in a cultivated area of soil. Post-emergent control of crabgrass was also documented. In addition, the study will also provide information to the industry sponsor on product efficacy. Project results may also be used for registration purposes and marketing in the Canadian market.
description: SAS, 9.4
description: Lyons' Lab Research Reports
DOI: 10.5683/sp3/uq7gij
title: Characterization of geological samples with dual-energy XCT: a comparison of three different scanners

description: Supplementary Data and scans acquired using medical-CT, HECTOR micro-CT and CoreTOM micro-CT
DOI: 10.5683/sp3/asc0bj
title: Drone images of river ice in mesoscale rivers in southern Quebec

description: This dataset includes videos acquired by drone during the winter of 2022-2023 and 2023-2024. The videos were acquired on four rivers located in southern Quebec, Canada: the Coaticook, Massawippi, Saint-François and L'Assomption rivers. The videos were taken in 4k or HD format with a Mavic 3 or a Mavic 3M.
DOI: 10.5683/sp3/bvopw1
title: Replication Data and Code for: The Local Effects of the First Golden Age of Globalization: Evidence from American Ports, 1870-1900

description: The data and programs replicate tables and figures from "The Local Effects of the First Golden Age of Globalization: Evidence from American Ports, 1870-1900", by Chan. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/dghlv4
title: In mouse and in vitro models, bowel preparation promotes pathogen colonization, translocation and exacerbation of inflammation

description: In the United States an estimated 14 million colonoscopies are performed yearly, each requiring patients to undergo bowel preparation, a laxative cleansing of the intestine’s luminal contents. Despite its widespread use, the effects of bowel preparation on gut physiology and susceptibility to pathogens remains poorly understood, particularly in individuals with compromised gut health. Using mouse and in vitro models, we found that bowel preparation with the laxative polyethylene glycol (PEG) rapidly disrupts, transiently increasing susceptibility to infection by Salmonella Typhimurium, including a non-motile mutant, and by gut pathobionts derived from ulcerative colitis microbiota. Bowel preparation also facilitated bacterial translocation to extraintestinal sites (mesenteric lymph nodes, liver, and spleen) and exacerbated inflammation in a chemically-induced colitis model. Although these findings are preclinical, they suggest that bowel preparation may have underappreciated risks in vulnerable populations, and warrant further clinical investigation.
DOI: 10.5683/sp3/id9dqx
title: Additive manufacturing of a super toughened biodegradable polymer blend: Structure-property-processing correlation and 3D printed prosthetic part development

description: Super toughened polymer materials have garnered significant attention from the scientific and industrial communities due to their vast application potential. However, a notable gap exists in the exploration of additive manufacturing (AM) of biodegradable polymer blends with enhanced impact resistance. This research addresses this gap by investigating the AM of a resilient green blend comprising PLA, BioPBS, and PBAT to achieve an enhanced impact resistance. To characterize the blend, rheological analysis, differential scanning calorimetry, thermomechanical analysis, and mechanical testing were performed. The printing parameters varied were the nozzle temperature, infill density, top and bottom solid layer raster angles, and infill pattern. This study is the first attempt to investigate the impact of the raster angle of top and bottom solid layers, which is important for determining the structural integrity of printed objects. The study revealed that a nozzle temperature of 180 °C, a rectilinear infill pattern, 100% infill density, and solid layers raster angle of 0° resulted in high mechanical properties with a notched Izod impact strength of 489.75 ± 16.6 J/m. Additionally, the study compared the mechanical properties of 3D printed and injection-molded samples. The 3D printed samples demonstrated comparable tensile strength to injection-molded samples, with only a 2% difference, and exhibited higher tensile and flexural moduli, showcasing 8 and 10% increases, respectively. However, there was a 10% decrease in impact strength compared to that of the injection-molded counterparts. These findings indicate that the 3D printed blend offers mechanical properties comparable to injection molding, making it a promising alternative for biomedical applications. A 3D printed leg prosthesis prototype has been developed using the formulated blend at optimized printing conditions.
description: <b>Notes on OPJU files:</b> OPJU files are Origin/OriginPro project files. Origin is a data analysis and graphing software. To view the raw OPJU files, Origin software is required or you may use the free Origin Viewer to view the OPJU files.
<b>Notes on preservation files:</b> For preservation purposes, 'flat file' versions of the multi-spreadsheet Excel workbooks contained in this dataset have been created. Additionally, PDF versions of all PowerPoint and Word Document files have been created. The content of these Excel workbooks, PowerPoint files, and Word documents have been exported into preservation-friendly formats and stored in the Preservation Files zip archive.
description: Origin
description: MS Excel