cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7899071
title: Quantitative evaluation of soil ion content using an imaginary part model of soil dielectric constant

description: ABSTRACT: An imaginary part model of soil dielectric constant for predicting the soil salinity status was developed based on a series of relations between dielectric imaginary part and soil bulk conductivity, soil bulk conductivity and soil solution electrical conductivity, and soil solution electrical conductivity and ion contents in soil using pot trials with different soil salinity levels in the 2008 growing season. This model was calibrated and tested with data from the 2009 growing season. The results showed that the inverted values of the total concentration of salt (Sc), Cl−, and Ca2+ at low frequencies (P-band of microwave observations) from the imaginary part model fitted well with the observed values, since root mean square errors (RMSEs) were 0.34 g kg−1, 0.09 g kg−1 and 0.13 g kg−1, respectively, but the inversion effect of Na+ was relatively poor. Moreover, the Sc, Cl−, and Na+ could be well inverted at high frequencies (C-band of microwave observations), since RMSEs were minor, with values of 0.25 g kg−1, 0.02 g kg−1, and 0.15 g kg−1, respectively. The close fit between the observed and inverted values indicated that the present models could be used to estimate soil ion content quickly and reliably under different saline conditions, which, when suitable measures are taken, can be used to reduce the effects of soil salinity on crop growth.
DOI: 10.5519/qd.cjk0ssdi
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (824260 records)
DOI: 10.6084/m9.figshare.7899071.v1
title: Quantitative evaluation of soil ion content using an imaginary part model of soil dielectric constant

description: ABSTRACT: An imaginary part model of soil dielectric constant for predicting the soil salinity status was developed based on a series of relations between dielectric imaginary part and soil bulk conductivity, soil bulk conductivity and soil solution electrical conductivity, and soil solution electrical conductivity and ion contents in soil using pot trials with different soil salinity levels in the 2008 growing season. This model was calibrated and tested with data from the 2009 growing season. The results showed that the inverted values of the total concentration of salt (Sc), Cl−, and Ca2+ at low frequencies (P-band of microwave observations) from the imaginary part model fitted well with the observed values, since root mean square errors (RMSEs) were 0.34 g kg−1, 0.09 g kg−1 and 0.13 g kg−1, respectively, but the inversion effect of Na+ was relatively poor. Moreover, the Sc, Cl−, and Na+ could be well inverted at high frequencies (C-band of microwave observations), since RMSEs were minor, with values of 0.25 g kg−1, 0.02 g kg−1, and 0.15 g kg−1, respectively. The close fit between the observed and inverted values indicated that the present models could be used to estimate soil ion content quickly and reliably under different saline conditions, which, when suitable measures are taken, can be used to reduce the effects of soil salinity on crop growth.
DOI: 10.6084/m9.figshare.7899080
title: Prognostic factors in patients undergoing early-start peritoneal dialysis within 24 h after catheter insertion

description: This study aimed to investigate the clinical characteristics, prognosis, and factors for survival of patients who underwent early-start peritoneal dialysis (PD) within 24 h after catheter insertion three years after PD. This study was conducted from January 1, 2013 to December 31, 2017. All adult patients who were diagnosed with end-stage renal disease (ESRD) and underwent PD for the first time within 24 h after catheter insertion in our hospital were included. All patients with PD were followed-up until they withdrew from PD, switching to hemodialysis, were transferred to other medical centers, underwent renal transplantation, died or were lost to follow-up, or continued to undergo dialysis until the end of the study period. The follow-up observation lasted three years. The number of eligible patients was 110, and switching to hemodialysis and death were the main reasons for patients to withdraw from PD. The 1-, 2-, and 3-year technical survival rates of patients were 89.1, 79.1, and 79.1% respectively, while the 1-, 2- and 3-year survival rates were 90, 81.8, and 81.8%, respectively. The Charlson comorbidity index, age, hemoglobin, serum albumin, diabetic nephropathy, chronic glomerulonephritis, and hypertensive renal damage were independent risk factors that affected the prognosis of PD patients. Under the condition of ensuring the quality of the PD catheter insertion, early-start PD within 24 h after catheter insertion is a safe treatment approach for ESRD patients.
DOI: 10.6084/m9.figshare.7899080.v1
title: Prognostic factors in patients undergoing early-start peritoneal dialysis within 24 h after catheter insertion

description: This study aimed to investigate the clinical characteristics, prognosis, and factors for survival of patients who underwent early-start peritoneal dialysis (PD) within 24 h after catheter insertion three years after PD. This study was conducted from January 1, 2013 to December 31, 2017. All adult patients who were diagnosed with end-stage renal disease (ESRD) and underwent PD for the first time within 24 h after catheter insertion in our hospital were included. All patients with PD were followed-up until they withdrew from PD, switching to hemodialysis, were transferred to other medical centers, underwent renal transplantation, died or were lost to follow-up, or continued to undergo dialysis until the end of the study period. The follow-up observation lasted three years. The number of eligible patients was 110, and switching to hemodialysis and death were the main reasons for patients to withdraw from PD. The 1-, 2-, and 3-year technical survival rates of patients were 89.1, 79.1, and 79.1% respectively, while the 1-, 2- and 3-year survival rates were 90, 81.8, and 81.8%, respectively. The Charlson comorbidity index, age, hemoglobin, serum albumin, diabetic nephropathy, chronic glomerulonephritis, and hypertensive renal damage were independent risk factors that affected the prognosis of PD patients. Under the condition of ensuring the quality of the PD catheter insertion, early-start PD within 24 h after catheter insertion is a safe treatment approach for ESRD patients.
DOI: 10.6084/m9.figshare.12617675
title: Additional file 2 of iPNHOT: a knowledge-based approach for identifying protein-nucleic acid interaction hot spots

description: Additional file 2 . Datasets for iPNHOT: A knowledge-based approach for identifying protein-nucleic acid interaction hot spots. This file provides more detailed data for the datasets. Table S2: The interface residues with observed ∆∆퐺 values of the training data set. Table S4: The interface residues with observed ∆∆퐺 values of the medium test set.
DOI: 10.6084/m9.figshare.12617675.v1
title: Additional file 2 of iPNHOT: a knowledge-based approach for identifying protein-nucleic acid interaction hot spots

description: Additional file 2 . Datasets for iPNHOT: A knowledge-based approach for identifying protein-nucleic acid interaction hot spots. This file provides more detailed data for the datasets. Table S2: The interface residues with observed ∆∆퐺 values of the training data set. Table S4: The interface residues with observed ∆∆퐺 values of the medium test set.
DOI: 10.6084/m9.figshare.7899110
title: Association between tumor necrosis factor polymorphisms and rheumatoid arthritis as well as systemic lupus erythematosus: a meta-analysis

description: Tumor necrosis factor-alpha (TNF-α) plays an important role in autoimmune diseases. Previous studies have investigated the association of TNF-α-238G/A (rs361525) and -308G/A (rs1800629) polymorphisms with rheumatoid arthritis (RA) and systemic lupus erythematosus (SLE). However, no agreed conclusion had been made. Therefore, this meta-analysis was conducted to assess the associations of TNF-α-238G/A and -308G/A polymorphisms with RA and SLE risk. A systematic search was conducted in commonly used databases. Meta-analysis was performed by STATA12.0. A total of 43 studies were included. In the overall population, the TNF-α-238A allele was observed to be a protective factor for RA (A vs G: OR=0.75, 95%CI=0.57–0.99, P=0.040) and the TNF-α-308A allele was found to be a risk factor for SLE (A vs G: OR=1.78, 95%CI=1.45–2.19, P&lt;0.001). However, no evidence of association was found between TNF-α-238 G/A polymorphism and SLE nor between -308G/A and RA. In the subgroup analysis, TNF-α-308A allele played a pathogenic role for RA in Latin Americans (A vs G: OR=1.46, 95%CI=1.15–1.84, P=0.002) and for SLE in Latin Americans (A vs G: OR=2.12, 95%CI=1.32–3.41, P=0.002) and Europeans (A vs G: OR=2.03, 95%CI=1.56–2.63, P&lt;0.001), while it played a protective role for RA in Asians (A vs G: OR=0.54, 95%CI=0.32–0.90, P=0.017). No significant association was found between TNF-α-308G/A and SLE susceptibility in Africans and Asians. This meta-analysis demonstrated that TNF-α-238A was associated with decreased risk of RA rather than SLE, while -308G/A polymorphism was associated with SLE rather than RA. Stratification analysis indicated that different ethnicities would have different risk alleles.
DOI: 10.6084/m9.figshare.7899110.v1
title: Association between tumor necrosis factor polymorphisms and rheumatoid arthritis as well as systemic lupus erythematosus: a meta-analysis

description: Tumor necrosis factor-alpha (TNF-α) plays an important role in autoimmune diseases. Previous studies have investigated the association of TNF-α-238G/A (rs361525) and -308G/A (rs1800629) polymorphisms with rheumatoid arthritis (RA) and systemic lupus erythematosus (SLE). However, no agreed conclusion had been made. Therefore, this meta-analysis was conducted to assess the associations of TNF-α-238G/A and -308G/A polymorphisms with RA and SLE risk. A systematic search was conducted in commonly used databases. Meta-analysis was performed by STATA12.0. A total of 43 studies were included. In the overall population, the TNF-α-238A allele was observed to be a protective factor for RA (A vs G: OR=0.75, 95%CI=0.57–0.99, P=0.040) and the TNF-α-308A allele was found to be a risk factor for SLE (A vs G: OR=1.78, 95%CI=1.45–2.19, P&lt;0.001). However, no evidence of association was found between TNF-α-238 G/A polymorphism and SLE nor between -308G/A and RA. In the subgroup analysis, TNF-α-308A allele played a pathogenic role for RA in Latin Americans (A vs G: OR=1.46, 95%CI=1.15–1.84, P=0.002) and for SLE in Latin Americans (A vs G: OR=2.12, 95%CI=1.32–3.41, P=0.002) and Europeans (A vs G: OR=2.03, 95%CI=1.56–2.63, P&lt;0.001), while it played a protective role for RA in Asians (A vs G: OR=0.54, 95%CI=0.32–0.90, P=0.017). No significant association was found between TNF-α-308G/A and SLE susceptibility in Africans and Asians. This meta-analysis demonstrated that TNF-α-238A was associated with decreased risk of RA rather than SLE, while -308G/A polymorphism was associated with SLE rather than RA. Stratification analysis indicated that different ethnicities would have different risk alleles.
DOI: 10.6084/m9.figshare.13141886
title: Additional file 13 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 13 RNA-seq data of expression levels of BnaTIFY in B. napus infected with S. sclerotiorum.
DOI: 10.6084/m9.figshare.13141898
title: Additional file 1 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 1 Characteristics of TIFY in B. napus, B. rapa and B. oleracea.
DOI: 10.6084/m9.figshare.13141877
title: Additional file 10 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 10 RNA-seq data of expression levels of BnaTIFY family genes across different tissues and organs.
DOI: 10.6084/m9.figshare.13141889
title: Additional file 14 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 14 Cis-elements present in the promoters of BnaTIFY genes in B. napus.
DOI: 10.6084/m9.figshare.13141898.v1
title: Additional file 1 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 1 Characteristics of TIFY in B. napus, B. rapa and B. oleracea.
DOI: 10.6084/m9.figshare.13141880
title: Additional file 11 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 11 RNA-seq data of expression levels (TPM: transcriptions per millon) of BnaTIFY family genes under different stresses and phytohormones.
DOI: 10.6084/m9.figshare.13141892.v1
title: Additional file 15 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 15. List of primers used in this study.
DOI: 10.6084/m9.figshare.13141889.v1
title: Additional file 14 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 14 Cis-elements present in the promoters of BnaTIFY genes in B. napus.
DOI: 10.6084/m9.figshare.13141925.v1
title: Additional file 9 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 9 Estimated Ka/Ks ratios of TIFY genes in Arabidopsis, B. napus, B. rapa, and B. oleracea.
DOI: 10.6084/m9.figshare.13141925
title: Additional file 9 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 9 Estimated Ka/Ks ratios of TIFY genes in Arabidopsis, B. napus, B. rapa, and B. oleracea.
DOI: 10.6084/m9.figshare.13141877.v1
title: Additional file 10 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 10 RNA-seq data of expression levels of BnaTIFY family genes across different tissues and organs.
DOI: 10.6084/m9.figshare.13141880.v1
title: Additional file 11 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 11 RNA-seq data of expression levels (TPM: transcriptions per millon) of BnaTIFY family genes under different stresses and phytohormones.
DOI: 10.6084/m9.figshare.13141883
title: Additional file 12 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 12 RNA-seq data of expression levels of BnaTIFY family genes under cold and freezing treatments.
DOI: 10.6084/m9.figshare.13141886.v1
title: Additional file 13 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 13 RNA-seq data of expression levels of BnaTIFY in B. napus infected with S. sclerotiorum.
DOI: 10.6084/m9.figshare.25151891
title: Supplementary Material for: Laparoscopic resection of the transverse colon cancer with an anomaly of the middle colic artery originating from the splenic artery: A case report.

description: Introduction: We encountered a colon cancer case with a very rare anomaly of the middle colic artery (MCA) originating from the splenic artery (SA). 
Case presentation: A woman was referred to our hospital for transverse colon cancer. Three-dimensional computed tomography (3D-CT) angiography showed an anomalous MCA originating from the SA, rather than from the superior mesenteric artery (SMA) as is typical. Laparoscopic left hemicolectomy with D3 lymph-node dissection was performed. The lymph nodes around the SMA were dissected from the caudal view, confirming the absence of a typical MCA. An anomalous SA-originating MCA was identified just below the pancreas, where it was clipped and ligated; subsequently, total mesenteric excision was achieved. 
Conclusion: As D3 lymph-node dissection for transverse colon cancer is technically difficult, 3D-CT angiography is useful for identifying vascular anomalies preoperatively, thereby avoiding intraoperative injury. This is the first case report of laparoscopic colectomy associated with a SA-originating MCA anomaly.
DOI: 10.6084/m9.figshare.13141892
title: Additional file 15 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 15. List of primers used in this study.
DOI: 10.6084/m9.figshare.13141883.v1
title: Additional file 12 of Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

description: Additional file 12 RNA-seq data of expression levels of BnaTIFY family genes under cold and freezing treatments.
DOI: 10.6084/m9.figshare.14714921
title: Additional file 1 of Correction to: Comparative analysis of ankyrin (ANK) genes of five capripoxviruses isolate strains from Xinjiang province in China

description: Additional file 1. Sequencing results of 3 ANK genes of 6 capripoxviruses isolates in Xinjiang.
DOI: 10.6084/m9.figshare.14714921.v1
title: Additional file 1 of Correction to: Comparative analysis of ankyrin (ANK) genes of five capripoxviruses isolate strains from Xinjiang province in China

description: Additional file 1. Sequencing results of 3 ANK genes of 6 capripoxviruses isolates in Xinjiang.
DOI: 10.6084/m9.figshare.12617759.v1
title: Additional file 2 of Diversity-guided Lamarckian random drift particle swarm optimization for flexible ligand docking

description: Additional file 2. Docking time expense of all the test cases for LGA, LPSO and DGLRDPSO. The additional file 2 includes one table that contains the docking time expense of all the holo- and apo-structure docking test cases for all the related tested algorithms.
DOI: 10.6084/m9.figshare.12617759
title: Additional file 2 of Diversity-guided Lamarckian random drift particle swarm optimization for flexible ligand docking

description: Additional file 2. Docking time expense of all the test cases for LGA, LPSO and DGLRDPSO. The additional file 2 includes one table that contains the docking time expense of all the holo- and apo-structure docking test cases for all the related tested algorithms.
DOI: 10.6084/m9.figshare.13141934
title: Additional file 2 of Effect of temperature and surfactant on biomass growth and higher-alcohol production during syngas fermentation by Clostridium carboxidivorans P7

description: Additional file 2: Table S1. Alignment statistic of transcripts. Table S2. KEGG pathway enrichment analysis of DEGs. Table S3. Expression of genes related to the Wood–Ljungdahl pathway and C2–C6 product biosynthetic pathway.
DOI: 10.6084/m9.figshare.13141934.v1
title: Additional file 2 of Effect of temperature and surfactant on biomass growth and higher-alcohol production during syngas fermentation by Clostridium carboxidivorans P7

description: Additional file 2: Table S1. Alignment statistic of transcripts. Table S2. KEGG pathway enrichment analysis of DEGs. Table S3. Expression of genes related to the Wood–Ljungdahl pathway and C2–C6 product biosynthetic pathway.
DOI: 10.6084/m9.figshare.8947772.v1
title: Additional file 9: of Transcriptome profiling of Puccinellia tenuiflora during seed germination under a long-term saline-alkali stress

description: Table S1. Summary of Illumina transcriptome sequencing for P. tenuiflora. Table S2. Primers information. Table S3. Functional annotation of the unigenes of P. tenuiflora. Table S4. Unigenes in salt tolerance mechanisms schematic in P. tenuiflora. (XLSX 13 kb)
DOI: 10.5281/zenodo.10303591
title: Online repository for: "Sorting microparticle mixtures by multiple properties in a single dielectrophoretic filter"

description: Please consult the Data_Overview file for information on the content of this online repository.
DOI: 10.5281/zenodo.10303592
title: Online repository for: "Sorting microparticle mixtures by multiple properties in a single dielectrophoretic filter"

description: Please consult the Data_Overview file for information on the content of this online repository.
DOI: 10.6084/m9.figshare.7374914
title: Additional file 1: of MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition

description: Primers used in the quantitative real-time RT-PCR analysis. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.7374914.v1
title: Additional file 1: of MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition

description: Primers used in the quantitative real-time RT-PCR analysis. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.8947772
title: Additional file 9: of Transcriptome profiling of Puccinellia tenuiflora during seed germination under a long-term saline-alkali stress

description: Table S1. Summary of Illumina transcriptome sequencing for P. tenuiflora. Table S2. Primers information. Table S3. Functional annotation of the unigenes of P. tenuiflora. Table S4. Unigenes in salt tolerance mechanisms schematic in P. tenuiflora. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7374935.v1
title: Additional file 2: of MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition

description: MiRNA families identified in the leaves and SAM of the maize H4 and NIL inbred lines. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.7375061
title: Additional file 1: of The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water

description: Supplementary Online Information. Additional files 10 and 11. (ZIP 18100 kb)
DOI: 10.24403/jp.1342385
title: Die „geheimnißvolle Ziehkraft hoher Berge“ oder „Als Humboldt den Chimborasso bestieg, war die Luft so dünn, dass er nicht mehr ohne Brille lesen konnte“ : zum 200. Jahrestag der Besteigung des Andenvulkans durch Alexander von Humboldt, Aimé Bonpland und Carlos Montúfar am 23. Juni 1802 / S. Jost Casper
DOI: 10.6084/m9.figshare.14715101.v2
title: Additional file 10 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 10: Table S9. List of CpG islands comprising 'GIM-GC common CIMP signature'.
DOI: 10.6084/m9.figshare.14715107.v2
title: Additional file 12 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 12: Table S11. List of 76 genes with hypermethylated CpG sites (β-value difference ≥ 0.2) and downregulation (&lt; 0.6 FD) in both GES1 CBS-deficient clones.
DOI: 10.6084/m9.figshare.14715113.v2
title: Additional file 14 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 14: Table S13. List of 29 genes with hypermethylated CpG sites (β-value difference ≥ 0.2) and downregulation (&lt; 0.6 FD) in both HFE145 CBS-deficient clones.
DOI: 10.6084/m9.figshare.14715128.v2
title: Additional file 19 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 19: Table S18. Overlap of negatively and positively correlated genes to CBS in gastric TCGA (q-value &lt; 0.05) with MSigDB hallmark gene sets (q-value &lt; 0.01).