cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12901382.v5
title: Ecological and economic outcomes of mangrove restoration: a meta-analysis approach

description: This dataset is used to conduct a comprehensive meta-analysis of the peer-reviewed literature on mangrove restoration to estimate its outcomes across different functions and economic costs/benefits. The peer-reviewed literature were firstly searched through ISI Web of Science Core Collection and Elsevier Scopus using generic wording for restoration impact without restriction on publication year on 22 December 2019. The second search was conducted using a refined keywords of 26 identified ecosystem function categories on 30 June 2020. In total, we identified 395 cases from 188 quantitative studies focusing on the outcomes of mangrove restoration on different functions, as well as economic costs and benefits of mangrove restoration. 962 observations from 88 studies covered 21 types of functions met the criteria to perform meta-analyses. We also extracted 30 cases spanning ten types of economic benefits and 68 cases spanning six types of restoration costs to conduct benefit-cost analysis.
DOI: 10.6084/m9.figshare.17427530.v1
title: Data file S9. from Differential word expression analyses highlight plague dynamics during the second pandemic

description: All Italian words raw data generated by “nested” Deseq2 analysis.
DOI: 10.6084/m9.figshare.28934531.v1
title: Diet of five anuran species of Japanese paddy field

description: Diet of five anuran species of Japanese paddy field
DOI: 10.17632/fywnpsjfpc
title: OCV test Voltage and Current Data - Samsung-30T INR21700 Battery

description: Voltage and Current measurements during discharging and charging of a Samsung-30T INR21700 battery
DOI: 10.17632/skwbr5k9gg
title: Grape inflorescence dataset

description: Grape inflorescence thinning
DOI: 10.6084/m9.figshare.6380015.v1
title: ARTIFICIALLY CIRCULARIZED pWCP

description: <b>FASTA files for the artificially circularized Wolbachia plasmid sequence from four Culex pipiens individuals (pWCP).</b><br>Details of the study and a reproducible bioinformatics workflow:<br>http://merenlab.org/data/wolbachia-plasmid/<br><br>All public data files in this collection:<br>https://figshare.com/projects/A_Wolbachia_Plasmid_by_Reveillaud_and_Bordenstein_et_al_2018_/32069
DOI: 10.6084/m9.figshare.8869109.v1
title: Dynamical modeling of multi-scale variability in neuronal competition

description: Data for figures for "Dynamical modeling of multi-scale variability in neuronal competition" publication.
DOI: 10.17632/6jfm6v6fs5
title: Biased Emotional Processes in Borderline Personality Disorder: Electrophysiological Insights from an Implicit Association Test Task (Dataset)

description: This dataset was collected to investigate the hypothesis that individuals with borderline personality disorder (BPD) traits exhibit implicit emotional biases and heightened neural reactivity to negative stimuli compared to healthy controls. The data demonstrates that participants with BPD traits responded faster to negative words in an Implicit Association Test (IAT) and showed distinct neural activity patterns in Event-Related Potentials (ERPs), particularly in the P2, N400, and Late Positive Potential (LPP) components.
The dataset includes behavioral measures (reaction times and accuracy) from the IAT, as well as electrophysiological recordings obtained via EEG. Participants were classified into two groups (BPD-vulnerable and healthy controls) based on clinical assessments including the SCID-II, BSL-23, and self-reported history of self-harm. EEG data were collected using a 32-electrode cap and processed to extract ERP amplitudes for congruent and incongruent trials with both positive and negative emotional valence words.
The findings can be interpreted to suggest that individuals with BPD traits have an implicit negativity bias and altered cognitive-emotional processing mechanisms. This dataset can be used to explore the relationship between implicit biases, emotional processing, and neural activity, offering potential applications for further research in psychopathology and cognitive neuroscience.
DOI: 10.6084/m9.figshare.25103138.v1
title: Pavement cracks from UAV imagery-1388

description: A pavement crack image dataset from UAV imagery integrated with <b>GSD</b> was established and has been made publicly available for the research community, serving as a valuable supplement to existing crack databases.A total of 1388 pavement crack images here were collected and labeled, with 304 samples identified as being of the longitudinal crack (<b>LC</b>) type, 303 samples identified as being of the transverse crack (<b>TC</b>) type, 313 samples identified as being of the obliquely oriented crack (<b>OC</b>) type, 368 samples identified as being of the alligator crack (<b>AC</b>) type, and 100 samples being identified as of the no-crack type. To ensure the deep learning-based model’s effectiveness, the datasets were divided into training, validation, and test sets in the ratio of 80%, 10%, and 10%, respectively.Please cited this reference as following if using the data.XinbaoChenX; Chang Liu; Long Chen; Xiaodong Zhu; Yaohui Zhang; Chenxi Wang ; A PavementCrack Detection and Evaluation Framework for a UAV Inspection System Based on Deep Learning,<i>Applied Sciences</i>, 2024, 14(3): 1157.<br>
DOI: 10.6084/m9.figshare.28481090.v1
title: Supplementary Material for: Locus Coeruleus sexual dimorphism and its impact on cognitive impairment and cortical atrophy in Alzheimer’s Disease

description: Introduction: Experimental data suggest sexual dimorphism in the Locus Coeruleus (LC), with females exhibiting higher neuronal count and noradrenergic activity. In Alzheimer’s Disease (AD), progressive LC dysfunction may contribute early to pathogenesis, and female sex is a key risk factor for AD. This study aimed to investigate if such sex differences exist in humans and whether they influence the relationship between LC degeneration and AD features, such as cortical atrophy and cognitive decline.
Methods: Fifty-three healthy controls (HC), 70 Mild Cognitive Impaired (MCI) subjects, and 29 Alzheimer’s Disease Demented (ADD) patients underwent high-field brain MRI with LC-sensitive sequences following detailed neuropsychological and neurological assessments. LC integrity was measured using the LC Contrast Ratio (LCCR) parameter based on a previously published template approach.
Results: Within the HC and MCI groups, females showed higher LCCR values than males. A significant sex effect was observed in the relationship between LC integrity and cortical volume in the frontotemporal cortices, with males showing a stronger association.
Conclusion: LC structure and function may differ between sexes, influencing AD pathophysiology through distinct mechanisms. While this sexual dimorphism may have a minor role, it should be considered in clinical investigations and drug development research.
DOI: 10.17632/7rwdky9twc
title: Assessment of the Construct and Criterion Validity Between Fall Risk Screening Measures (M-CTSIB VS TUG Test)_Research_Data

description: Abstract
Purpose: The purpose of this study was to assess fall risk screening tools’ correlation between tests that yield similar results and to compare the accuracy of screeners in predicting fall risk within the geriatric population.
Method: An experimental validity study was conducted evaluating the Timed Up and Go (TUG) and modified clinical test of sensory integration and balance (m-CTSIB) within a group of 20 elderly individuals. The m-CTSIB was measured by both an accelerometer and force plate simultaneously. The subjects’ history of falls was recorded, which categorized individuals into “faller” and “non-faller” groups. 
Results: The results of the m-CTSIB and Timed Up and Go were not significantly correlated, suggesting that the two measures most likely assess different factors contributing to an individual's fall risk. Neither screening measure was successful in predicting fall history, which indicates reported fall history may not be accurate representations of an individual's objective balance performance. The accelerometer and force plate demonstrated a significant correlation in limited conditions of the m-CTSIB supporting encouraging validity specific to more challenging balance conditions. 
Conclusions: This study demonstrates the importance of a more comprehensive approach to mitigating fall risk within the elderly population. Self-reported fall history may not be a true representation of an individual's history or an accurate marker to compare an individual’s performance in objective balance measures. Multiple factors contribute to an individual's risk for falls, and it is necessary to take multiple elements into consideration, including objective and self-reported measures.
DOI: 10.17632/8rj98pp6km
title: "What do saliency models predict?" Koehler, Guo, Zhang, Eckstein, Journal of Vision, 2014

description: Description of this data This data repository contains: 800 Images, observer fixations for three tasks (free search, saliency search, object search) for 19-22 subjects for the same 800 images. In addition, the data set includes explicit judgments of saliency for the 800 images (100 individuals). See paper for more details. https://jov.arvojournals.org/article.aspx?articleid=2121547&resultClick=1 If you use this data, please cite: "What do saliency models predict?" Koehler, Guo, Zhang, Eckstein, Journal of Vision, 2014, 14(2) DOI: 10.11 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Contact info: Katie Koehler (koehler.kathryn@gmail.com) Miguel Eckstein (eckstein@psych.ucsb.edu) Contents of folder: Cues (folder): Images with the cue names for the object search task embedded into a mid-level grey background. Cued objects are absent in images 1-400 and present in images 401-800. _Left and _Right suffixes indicate the expected location of the object based on the context in the image (either on the left half or right half of the image). Odd numbered images contain expected object locations on the left half, even on right. Cues (text file): text file with all cues and image numbers listed on a separate line. Same as cues embedded in images in Cues folder (in case you prefer to generate the cue text yourself in an experiment). Images: 405x405px experimental images (used for all tasks). ObserverData.mat: Matlab file containing all experimental data (explicit judgments and eye movements) in the form of image coordinates. Variables in this file: explicit_judg: matrix containing click locations for each observer in the explicit judgment task. rows index different observers, columns index different images, 3rd dim=coords (x=1, y=2) freeview_x/y, objsearch_x/y, salview_x/y: eye movements locations for each eye movement task. Rows index different observers, columns index different images, 3rd dim indexes eye movement number within a single trial. x- and y-coordinates are recorded in separate matrices as labeled. All text files are labeled by task and contain the same information as the matlab file, along with observer number, image number, and fixation number (in the case of eye movement data). %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Notes about individual images: The resolution and content of each image varies. Depending on your purpose, the factors listed below may prompt you to exclude a few images from use. If you have recommendations for information to include about specific images, please notify the researchers (contact info listed above). Images with disrupted aspect ratios: Image 35 Image 64 Image 184 Image 427 Images with noticable artifacts/pixelation: Image 97 Image 108 Image 184 Image 195 Image 234 Image 251 Image 545 Images with highly sparse content (repetitive background with no clear standout region or foreground object): Image 55 Image 79 Image 92 Image 97 Image 144 Image 147 Image 153 Image 182 Image 232 Image 520
DOI: 10.17632/xt3nmkm375
title: The acetylase activity of Cdu1 regulates bacterial exit from infected cells by protecting Chlamydia effectors from degradation

description: This data set contains unprocessed and processed western blot images, indirect fluorescence images, and quantitative data sets that were used to generate all Figures in the publication "The acetylase activity of Cdu1 protects Chlamydia effectors from degradation to regulate bacterial exit from infected cells".
DOI: 10.6084/m9.figshare.14670197.v1
title: Additional file 11 of Re-examination of two diatom reference genomes using long-read sequencing

description: Additional file 11: Supplementary Table 10. Details of full-length, putatively active LTR-RT discovery for the T. pseudonana reference and de novo Flye genomes.
DOI: 10.6084/m9.figshare.17294033.v1
title: Supplementary Material for: Chemoprevention of Oesophageal Squamous-Cell Carcinoma and Adenocarcinoma: A Multicentre Retrospective Cohort Study

description: <b><i>Background:</i></b> Oesophageal cancer comprises 2 different histological variants: oesophageal squamous-cell carcinoma (ESCC) and adenocarcinoma (EAC). While there are multiple therapeutic options for both types, patients with advanced or metastatic oesophageal cancer still suffer from poor prognosis. <b><i>Aims:</i></b> The study aimed to examine the association between the risk of oesophageal cancer and medications and to estimate the chemopreventive effects of commonly used drugs. <b><i>Methods:</i></b> A multicentre retrospective cohort study was conducted using data from 9 hospital databases of hospitalized patients between 2014 and 2019. The primary outcomes were ESCC and EAC. The association of oesophageal cancer with drug use and clinical factors was evaluated. Odds ratios (ORs) were adjusted for age, sex, Charlson comorbidity index scores, and smoking with/without gastro-oesophageal reflux disease. <b><i>Results:</i></b> The use of proton pump inhibitors (PPIs) (adjusted OR [aOR] 0.48, <i>p</i> &lt; 0.0001), aspirin (aOR 0.32, <i>p</i> &lt; 0.0001), cyclooxygenase-2 inhibitor (COX2I) (aOR 0.70, <i>p</i> = 0.0005), steroid (aOR 0.19, <i>p</i> &lt; 0.0001), statin (aOR 0.43, <i>p</i> &lt; 0.0001), and metformin (aOR 0.42, <i>p</i> &lt; 0.0001) was associated with a lower risk of ESCC than that in non-use. The use of aspirin (aOR 0.33, <i>p</i> = 0.0006) and steroids (aOR 0.54, <i>p</i> = 0.022) was associated with a lower risk of EAC than that in non-use. <b><i>Conclusion:</i></b> COX2Is, statins, metformin, and PPIs could help in prevention of ESCC, and aspirin and steroids may be chemopreventive for both types of oesophageal cancer.
DOI: 10.6084/m9.figshare.22586284.v1
title: Transcriptomic analysis of mRNA expression profiles in the microglia of mouse brains infected with rabies viruses of varying virulence

description: Rabies is a lethal encephalitis caused by rabies virus (RABV) with a fatality rate near 100% after the onset of clinical symptoms in humans and animals. Microglia are resident immune cells of the central nervous system. Few studies have been conducted on the functional role of microglia in RABV infection. Here, we performed a transcriptomics analysis of mRNA expression profiles in the microglia of mouse brains intracerebrally infected with RABV
DOI: 10.6084/m9.figshare.27138981.v1
title: Statistical analysis

description: The integration of AI in the evaluation of Chest X-rays could assist clinicians and enhance accuracy and workflows. We evaluated sensitivity (Se) and specificity (Sp) of an AI software and a radiology resident in interpreting Chest X-ray examinations referred from the Emergency Department (ED) against a senior radiologist (Gold Standard, GS). We also assessed the concordance rate between AI and the resident, described the frequency of doubtful cases in each category and determine how many were considered positive by the GS and evaluated other variables AI is not trained to detect. We conducted an observational, retrospective study, analyzing thoracic radiographs from a sample of 784 patients referred from the ED at our hospital. AI is trained to detect five categorical variables (pulmonary nodule, pulmonary opacity, pleural effusion, pneumothorax, and fracture) and associate them with a confidence label ("positive," "doubtful," or "negative"). Se for fracture and pneumothorax was high (100%), moderate for pulmonary opacity (AI= 76%, resident= 71%), and reasonable for pleural effusion (AI= 60%, resident=67%), with NPV&gt;95% and AUC&gt;0.8. For pulmonary nodule, the resident's Se was moderate (75%), while AI's was low (33%). When AI doubted, only a few of these doubtful diagnoses were considered positive by the GS. The resident doubted less. The Kappa Coefficient between resident and AI was fair (0.3) for all variables, except for pleural effusion, which was moderate (0.5). The prevalence of other variables was: 16% mediastinal abnormalities, 20% surgical material, and 20% other pulmonary findings. AI would be useful to detect most of the aforementioned items, except for pulmonary nodules. Its high NPV stands out, making it useful for screening. When AI doubts, most of the findings are negative. It would be useful to train AI to detect additional findings.
DOI: 10.6084/m9.figshare.10311041.v1
title: Table 3_Proteins_Desalting Methods.xlsx

description: List of proteins identified in 3 replicates of different Desalting methods (Oasis, Sep-Pak, and StageTip) for lysosome enriched samples
DOI: 10.6084/m9.figshare.20115719.v1
title: Dominant toxin hypothesis: unravelling the venom phenotype across micro and macroevolution

description: Supplementary fasta files for of toxins in multiple sea anemones species and populations. This includes actiniarian toxin protein sequences from the families: Actinoporins, neurotoxins such as Nematocyte Expressed Protein 3 (NEP3), sodium channel modulators (NaTx), and potassium channel toxins (KTx type 1, 2, 3 and 5 families) and proteases such as NEP6 Astacins. <br> This also includes fasta files for toxin families NaTx and KTx3 for Actinia equina (AEQU), Nematostella vectensis (NVEC) and Scolanthus callimorphus (SCAL) at the DNA, mRNA and CDS and amino acid level. <br> The diversity of Nv1 was explored across different populations of N. vectensis using transcriptomic, amplicon and genomic sequencing. We include fasta files for the CDS and amplicon DNA sequenceing of Nv1. We also a fasta of contigs that include Nv1 haplotype generated using long-read sequencing
DOI: 10.6084/m9.figshare.24099831.v2
title: Data for the article:The northern wheatear is reducing its distribution and moving to higher altitudes in its southernmost European distribution

description: The dataset corresponds to the presence-absence of the Northern Wheatear (<i>Oenanthe o</i><i>enanthe</i>) in each Operational Geographic Unit (OGU) of our study area for both time periods (2003 and 2022). These are the presence-absence data we used to carry out the analyses of our study, which were obtained from the two most recent Spanish bird atlases.The uploaded excel file contains three columns whose information is explained below:- UTMCODE --&gt; Identifier of each OGU in our study area- Oena_oena_2003 --&gt; Presence (1) / Absence (0) of the species in each OGU in 2003- Oena_oena_2022 --&gt; Presence (1) / Absence (0) of the species in each OGU in 2022
DOI: 10.6084/m9.figshare.26686486.v2
title: Stalagmite (no. QX3) dataset.xlsx

description: The datasets for the stalagmite QX3 include oxygen and carbon isotopes as well as element-to-Ca ratios (Sr/Ca and Mg/Ca). The datasests have a time span of about 2700 - 6300 years ago.
DOI: 10.17632/3bw5tz9s76
title: Replication of: Early 20th Century American Exceptionalism: Production, Trade and Diffusion of the Automobile

description: This registry of replication sources includes: 1) complete data inputs; and 2) matlab and STATA code for replication of all data constructions, empirical and estimation results and reproduction of all figures and tables in the publication of the same name as this replication registry.
DOI: 10.23641/asha.7268651.v1
title: Sketch and Speak intervention (Ukrainetz, 2018)

description: <b>Purpose: </b>This preliminary study investigated an intervention procedure employing 2 types of note-taking and oral practice to improve expository reporting skills.<b>Procedure: </b>Forty-four 4th to 6th graders with language-related learning disabilities from 9 schools were assigned to treatment or control conditions that were balanced for grade, oral language, and other features. The treatment condition received 6 30-min individual or pair sessions from the school of speech-language pathologists (SLPs). Treatment involved reducing statements from grade-level science articles into concise ideas, recording the ideas as pictographic and conventional notes, and expanding from the notes into full oral sentences that are then combined into oral reports. Participants were pretested and posttested on taking notes from grade-level history articles and using the notes to give oral reports. Posttesting also included written reports 1 to 3 days following the oral reports.<b>Results: </b>The treatment group showed significantly greater improvement than the control group on multiple quality features of the notes and oral reports. Quantity, holistic oral quality, and delayed written reports were not significantly better. The SLPs reported high levels of student engagement and learning of skills and content within treatment. They attributed the perceived benefits to the elements of simplicity, visuals, oral practice, repeated opportunities, and visible progress.<b>Conclusion: </b>This study indicates potential for Sketch and Speak to improve student performance in expository reporting and gives direction for strengthening and further investigating this novel SLP treatment.<br><b>Supplemental Material S1. </b>Donal’s pretest written notes.<br><b>Supplemental Material S2. </b>Donal’s posttest pictographic notes that resulted.<br><b>Supplemental Material S3. </b>Tyrone’s pretest written notes.<br><b>Supplemental Material S4. </b>Tyrone’s posttest written and pictographic notes. <br>Ukrainetz, T. A. (2018). Sketch and Speak: An expository intervention using note-taking and oral practice for children with language-related learning disabilities. <i>Language, Speech, and Hearing Services in Schools.</i> Advance online publication. https://doi.org/10.1044/2018_LSHSS-18-0047<br>