cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12839228.v1
title: Supplementary Material for: Clinical Practice Guidelines for Bladder Cancer: A Systematic Review and Meta-Analysis Using the AGREE II Instrument

description: <b><i>Context:</i></b> Numerous health care organizations have established guidelines on diagnosis and treatment of bladder cancer. However, the lack of a standardized guideline development approach results in considerable differences of the guidelines’ methodological quality. <b><i>Objective:</i></b> To assess the methodological quality of all relevant clinical practice guidelines (CPGs) for urinary bladder cancer and provide a reference for clinicians in choosing guidelines of high methodological quality. <b><i>Evidence Acquisition:</i></b> A systematic literature search was conducted in Medline via PubMed, 4 CPG databases, and 7 databases of interdisciplinary organizations. CPGs for non-muscle-invasive bladder cancer (NMIBC) and muscle-invasive bladder cancer (MIBC) with the topics screening, pathology, diagnosis, treatment, and aftercare published in English language between 2012 and 2018 were included. The CPG quality was analyzed using the Appraisal of Guidelines for Research and Evaluation (AGREE) II instrument. <b><i>Evidence Synthesis:</i></b> A total of 16 CPGs were included for the quality appraisal. Because of predefined criteria, 5 CPGs were “strongly recommended” (American Urological Association NMIBC, European Association of Urology [EAU] NMIBC, EAU MIBC, National Institute for Health and Care Excellence, and National Comprehensive Cancer Network), 4 CPGs were “weakly recommended” and 7 CPGs were “not recommended.” <b><i>Conclusions:</i></b> The methodological quality of bladder cancer guidelines is diverse. Considering the rapid development of new therapies (e.g., immune checkpoint inhibitors), “living guidelines” of high methodological quality, such as the EAU NMIBC or MIBC guideline, will become more relevant in the future guideline’s landscape.
DOI: 10.6084/m9.figshare.12839240.v1
title: hybrid_bandgap_200821_v1.zip

description: Highly accurate band-gap database for 10,481 inorganic compounds with <i>E</i><sub>g</sub> ranging from 0 to 5 eV
DOI: 10.6084/m9.figshare.12839207.v1
title: Chicken_filtered.vcf

description: Beard gene mapping in Beijing Fatty chicken.
DOI: 10.6084/m9.figshare.12839240.v2
title: A band-gap database for semiconducting inorganic materials calculated with hybrid functional

description: Highly accurate band-gap database for 10,481 inorganic compounds with <i>E</i><sub>g</sub> ranging from 0 to 5 eV
DOI: 10.6084/m9.figshare.12839207.v3
title: Beard gene mapping in Beijing Fatty chicken

description: Beard gene mapping in Beijing Fatty chicken.
DOI: 10.6084/m9.figshare.12839207.v2
title: Beard gene mapping in Beijing Fatty chicken

description: Beard gene mapping in Beijing Fatty chicken.
DOI: 10.6084/m9.figshare.12839130
title: Additional file 2 of Effects of climate, biotic factors, and phylogeny on allometric relationships: testing the metabolic scaling theory in plantations and natural forests across China

description: Additional file 2.
DOI: 10.6084/m9.figshare.12839130.v1
title: Additional file 2 of Effects of climate, biotic factors, and phylogeny on allometric relationships: testing the metabolic scaling theory in plantations and natural forests across China

description: Additional file 2.
DOI: 10.6084/m9.figshare.12839028
title: Additional file 4 of Cis and trans effects differentially contribute to the evolution of promoters and enhancers

description: Additional file 4: Supplemental Table S6. orthologous TF expression in hESCs and mESCs.
DOI: 10.6084/m9.figshare.12859562
title: Supplementary Material for: Hypertensive Disorders of Pregnancy and Risk of Cardiovascular Disease-Related Morbidity and Mortality: A Systematic Review and Meta-Analysis

description: <b><i>Introduction:</i></b> Several studies have demonstrated that there is a higher risk of cardiovascular disease (CVD) in women with a history of hypertensive disorders of pregnancy (HDP). However, effect sizes varied greatly between these studies, and a complete overview of the existing data in the literature is lacking. We aimed to evaluate the association between HDP and the risk of CVD-related morbidity and mortality. <b><i>Methods:</i></b> Systematic literature searches were conducted in several electronic databases from inception to July 2019. Exposure of interest was any type of HDP. Outcomes of interest included any CVD, CVD-related mortality, and hypertension. <b><i>Results:</i></b> Sixty-six cohort and 7 case-control studies involving &gt;13 million women were included. The overall combined relative risks (RRs) for women with a history of HDP compared with the reference group were 1.80 (95% confidence interval [CI] 1.67–1.94) for any CVD, 1.66 (1.49–1.84) for coronary artery heart disease, 2.87 (2.14–3.85) for heart failure, 1.60 (1.29–2.00) for peripheral vascular disease, 1.72 (1.50–1.97) for stroke, 1.78 (1.58–2.00) for CVD-related mortality, and 3.16 (2.74–3.64) for hypertension. Significant heterogeneity was partially explained by all or part of the variables including type of exposure, follow-up time, geographic region, and sample source. <b><i>Conclusions:</i></b> Women with a history of HDP are at an increased risk of future CVD-related morbidity and mortality. Our study highlights the importance of life-long monitoring of cardiovascular risk factors in women with a history of HDP.
DOI: 10.6084/m9.figshare.12839025
title: Additional file 3 of Cis and trans effects differentially contribute to the evolution of promoters and enhancers

description: Additional file 3: Supplemental Table S5. TF motifs and their effects on MPRA activity.
DOI: 10.6084/m9.figshare.12839028.v1
title: Additional file 4 of Cis and trans effects differentially contribute to the evolution of promoters and enhancers

description: Additional file 4: Supplemental Table S6. orthologous TF expression in hESCs and mESCs.
DOI: 10.6084/m9.figshare.12839022
title: Additional file 2 of Cis and trans effects differentially contribute to the evolution of promoters and enhancers

description: Additional file 2: Supplemental Table S2. list of regulatory elements included in the MPRA.
DOI: 10.6084/m9.figshare.12839025.v1
title: Additional file 3 of Cis and trans effects differentially contribute to the evolution of promoters and enhancers

description: Additional file 3: Supplemental Table S5. TF motifs and their effects on MPRA activity.
DOI: 10.6084/m9.figshare.12839022.v1
title: Additional file 2 of Cis and trans effects differentially contribute to the evolution of promoters and enhancers

description: Additional file 2: Supplemental Table S2. list of regulatory elements included in the MPRA.
DOI: 10.6084/m9.figshare.12859562.v1
title: Supplementary Material for: Hypertensive Disorders of Pregnancy and Risk of Cardiovascular Disease-Related Morbidity and Mortality: A Systematic Review and Meta-Analysis

description: <b><i>Introduction:</i></b> Several studies have demonstrated that there is a higher risk of cardiovascular disease (CVD) in women with a history of hypertensive disorders of pregnancy (HDP). However, effect sizes varied greatly between these studies, and a complete overview of the existing data in the literature is lacking. We aimed to evaluate the association between HDP and the risk of CVD-related morbidity and mortality. <b><i>Methods:</i></b> Systematic literature searches were conducted in several electronic databases from inception to July 2019. Exposure of interest was any type of HDP. Outcomes of interest included any CVD, CVD-related mortality, and hypertension. <b><i>Results:</i></b> Sixty-six cohort and 7 case-control studies involving &gt;13 million women were included. The overall combined relative risks (RRs) for women with a history of HDP compared with the reference group were 1.80 (95% confidence interval [CI] 1.67–1.94) for any CVD, 1.66 (1.49–1.84) for coronary artery heart disease, 2.87 (2.14–3.85) for heart failure, 1.60 (1.29–2.00) for peripheral vascular disease, 1.72 (1.50–1.97) for stroke, 1.78 (1.58–2.00) for CVD-related mortality, and 3.16 (2.74–3.64) for hypertension. Significant heterogeneity was partially explained by all or part of the variables including type of exposure, follow-up time, geographic region, and sample source. <b><i>Conclusions:</i></b> Women with a history of HDP are at an increased risk of future CVD-related morbidity and mortality. Our study highlights the importance of life-long monitoring of cardiovascular risk factors in women with a history of HDP.
DOI: 10.6084/m9.figshare.12838973
title: Additional file 1 of Candidate stress biomarkers for queen failure diagnostics

description: Additional file 1.
DOI: 10.6084/m9.figshare.12838973.v1
title: Additional file 1 of Candidate stress biomarkers for queen failure diagnostics

description: Additional file 1.
DOI: 10.6084/m9.figshare.12838971
title: Additional file 1 of Association of TIM-3 expression with glucose metabolism in Jurkat T cells

description: Additional file 1. Supplemental Figure 1. TIM-3 expression in TIM-3 overexpressing and control cells. Supplemental Figure 2. Transcript levels of Glut6, 8 and SGLT1 in TIM-3 overexpressing or knockout cells. Supplemental Figure 3. HK2 and PFKFB3 expression in TIM-3 overexpressing or knockout cells.
DOI: 10.6084/m9.figshare.12838971.v1
title: Additional file 1 of Association of TIM-3 expression with glucose metabolism in Jurkat T cells

description: Additional file 1. Supplemental Figure 1. TIM-3 expression in TIM-3 overexpressing and control cells. Supplemental Figure 2. Transcript levels of Glut6, 8 and SGLT1 in TIM-3 overexpressing or knockout cells. Supplemental Figure 3. HK2 and PFKFB3 expression in TIM-3 overexpressing or knockout cells.
DOI: 10.6084/m9.figshare.12838893
title: Additional file 2 of DNA polymerase stalling at structured DNA constrains the expansion of short tandem repeats

description: Additional file 2. Sequences, stall scores, kinetics parameters and predicted structures of the 20,000 designed DNA sequences (CSV file).
DOI: 10.6084/m9.figshare.12838893.v1
title: Additional file 2 of DNA polymerase stalling at structured DNA constrains the expansion of short tandem repeats

description: Additional file 2. Sequences, stall scores, kinetics parameters and predicted structures of the 20,000 designed DNA sequences (CSV file).
DOI: 10.6084/m9.figshare.12838817
title: Additional file 4 of Isolation of novel citrus and plum fruit promoters and their functional characterization for fruit biotechnology

description: Additional file 4: Table S1. β-glucuronidase activity in measured in tomato fruit and leaves. The mean of nine samples (except CsJuSacp with n = 6), with their standard error bars (the error bars) are shown (see Fig. 6). Table S2. β-glucuronidase activity in measured in tomato fruit and leaves. The measured β-glucuronidase activity in leaves (green), unripe fruit (yellow) and ripe fruit (red) from wildtype (WT) and representative transgenic tomato lines is shown from the mean of nine samples (except CsJuSacp with n = 6). The median and interquartile range are indicated in boxplots. Kruskal-Wallis rank sum tests indicated significant differences between promoters for leaves (χ2 = 51.55, df = 8, p = 2.055 × 10− 8), unripe fruits (χ2 = 57.65, df = 8, p = 1.344 × 10− 9), and ripe fruits (χ2 = 51.198, df = 8, p = 2.404 × 10− 8). Post-hoc Wilcoxon tests were performed for all pair-wise comparisons.
DOI: 10.6084/m9.figshare.12838817.v1
title: Additional file 4 of Isolation of novel citrus and plum fruit promoters and their functional characterization for fruit biotechnology

description: Additional file 4: Table S1. β-glucuronidase activity in measured in tomato fruit and leaves. The mean of nine samples (except CsJuSacp with n = 6), with their standard error bars (the error bars) are shown (see Fig. 6). Table S2. β-glucuronidase activity in measured in tomato fruit and leaves. The measured β-glucuronidase activity in leaves (green), unripe fruit (yellow) and ripe fruit (red) from wildtype (WT) and representative transgenic tomato lines is shown from the mean of nine samples (except CsJuSacp with n = 6). The median and interquartile range are indicated in boxplots. Kruskal-Wallis rank sum tests indicated significant differences between promoters for leaves (χ2 = 51.55, df = 8, p = 2.055 × 10− 8), unripe fruits (χ2 = 57.65, df = 8, p = 1.344 × 10− 9), and ripe fruits (χ2 = 51.198, df = 8, p = 2.404 × 10− 8). Post-hoc Wilcoxon tests were performed for all pair-wise comparisons.
DOI: 10.6084/m9.figshare.12859541.v1
title: SUPPLEMENTRY_INFORMATION_1 SEQUENCES FROM BANGLADESH.docx

description: SARS-CoV-2 SEQUENCES FROM BANGLADESH
DOI: 10.6084/m9.figshare.12838776
title: Additional file 4 of Theoretical and empirical comparisons of expected and realized relationships for the X-chromosome

description: Additional file 4. Julia code.
DOI: 10.6084/m9.figshare.12838776.v1
title: Additional file 4 of Theoretical and empirical comparisons of expected and realized relationships for the X-chromosome

description: Additional file 4. Julia code.
DOI: 10.5281/zenodo.3998880
title: Repository: Deuterium and 37Chlorine Rich Fluids on the Surface of Mars: Evidence from the Enriched Basaltic Shergottite Northwest Africa 8657

description: This repository contains three supplementary tables corresponding to the EPMA and nanoSIMS analytical data of apatite from the martian meteorite NWA 8657. Supplementary Table 1: EPMA result of apatite from NWA 8657 . Supplementary Table 2: Water content and hydrogen isotopes of apatite, merrillite, maskelynite, mesostasis, and pyroxene from NWA 8657. Supplementary Table 3: Cl content and Cl isotopes of apatite from NWA 8657.
DOI: 10.5281/zenodo.3998879
title: Repository: Deuterium and 37Chlorine Rich Fluids on the Surface of Mars: Evidence from the Enriched Basaltic Shergottite Northwest Africa 8657

description: This repository contains three supplementary tables corresponding to the EPMA and nanoSIMS analytical data of apatite from the martian meteorite NWA 8657. Supplementary Table 1: EPMA result of apatite from NWA 8657 . Supplementary Table 2: Water content and hydrogen isotopes of apatite, merrillite, maskelynite, mesostasis, and pyroxene from NWA 8657. Supplementary Table 3: Cl content and Cl isotopes of apatite from NWA 8657.
DOI: 10.6084/m9.figshare.12838473
title: Additional file 1 of Diagnosis-linked antibiotic prescribing in Swedish primary care - a comparison between in-hours and out-of-hours

description: Additional file 1. Infection diagnoses selected to be included in the Kronoberg Infection Database in Primary care 2006–2014. Description: The total number of patients and visits are shown for all providers (physicians, nurses) and for physicians only.
DOI: 10.6084/m9.figshare.12838473.v1
title: Additional file 1 of Diagnosis-linked antibiotic prescribing in Swedish primary care - a comparison between in-hours and out-of-hours

description: Additional file 1. Infection diagnoses selected to be included in the Kronoberg Infection Database in Primary care 2006–2014. Description: The total number of patients and visits are shown for all providers (physicians, nurses) and for physicians only.
DOI: 10.6084/m9.figshare.12838448
title: Additional file 5 of Atomic ring invariant and Modified CANON extended connectivity algorithm for symmetry perception in molecular graphs and rigorous canonicalization of SMILES

description: Additional file 5. Testing results of the symmetry perception algorithm for other graphs.
DOI: 10.6084/m9.figshare.12838445
title: Additional file 4 of Atomic ring invariant and Modified CANON extended connectivity algorithm for symmetry perception in molecular graphs and rigorous canonicalization of SMILES

description: Additional file 4. Testing results of the symmetry perception algorithm for 4-regular graphs.
DOI: 10.6084/m9.figshare.12838439
title: Additional file 2 of Atomic ring invariant and Modified CANON extended connectivity algorithm for symmetry perception in molecular graphs and rigorous canonicalization of SMILES

description: Additional file 2. Testing results of the symmetry perception algorithm for test graphs.
DOI: 10.6084/m9.figshare.12838442
title: Additional file 3 of Atomic ring invariant and Modified CANON extended connectivity algorithm for symmetry perception in molecular graphs and rigorous canonicalization of SMILES

description: Additional file 3. Testing results of the symmetry perception algorithm for 3-regular graphs.
DOI: 10.6084/m9.figshare.12838445.v1
title: Additional file 4 of Atomic ring invariant and Modified CANON extended connectivity algorithm for symmetry perception in molecular graphs and rigorous canonicalization of SMILES

description: Additional file 4. Testing results of the symmetry perception algorithm for 4-regular graphs.
DOI: 10.6084/m9.figshare.12838448.v1
title: Additional file 5 of Atomic ring invariant and Modified CANON extended connectivity algorithm for symmetry perception in molecular graphs and rigorous canonicalization of SMILES

description: Additional file 5. Testing results of the symmetry perception algorithm for other graphs.
DOI: 10.6084/m9.figshare.12838436
title: Additional file 1 of Atomic ring invariant and Modified CANON extended connectivity algorithm for symmetry perception in molecular graphs and rigorous canonicalization of SMILES

description: Additional file 1. PL/SQL source codes of the described algorithms.
DOI: 10.6084/m9.figshare.12838439.v1
title: Additional file 2 of Atomic ring invariant and Modified CANON extended connectivity algorithm for symmetry perception in molecular graphs and rigorous canonicalization of SMILES

description: Additional file 2. Testing results of the symmetry perception algorithm for test graphs.
DOI: 10.6084/m9.figshare.12838442.v1
title: Additional file 3 of Atomic ring invariant and Modified CANON extended connectivity algorithm for symmetry perception in molecular graphs and rigorous canonicalization of SMILES

description: Additional file 3. Testing results of the symmetry perception algorithm for 3-regular graphs.
DOI: 10.6084/m9.figshare.12838436.v1
title: Additional file 1 of Atomic ring invariant and Modified CANON extended connectivity algorithm for symmetry perception in molecular graphs and rigorous canonicalization of SMILES

description: Additional file 1. PL/SQL source codes of the described algorithms.
DOI: 10.6084/m9.figshare.12838368
title: Additional file 3 of Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis

description: Additional file 3: List of proteins involved in gliding motility and type 9 secretion in F. johnsoniae UW101 and P. gingivalis W83 used in the comparative genomics analysis.
DOI: 10.6084/m9.figshare.12838371
title: Additional file 4 of Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis

description: Additional file 4: Frequencies and Abundances of CAZymes and PULs in different taxonomic groups and Flavobacteriaceae clades.
DOI: 10.6084/m9.figshare.12838368.v1
title: Additional file 3 of Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis

description: Additional file 3: List of proteins involved in gliding motility and type 9 secretion in F. johnsoniae UW101 and P. gingivalis W83 used in the comparative genomics analysis.
DOI: 10.6084/m9.figshare.12838371.v1
title: Additional file 4 of Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis

description: Additional file 4: Frequencies and Abundances of CAZymes and PULs in different taxonomic groups and Flavobacteriaceae clades.
DOI: 10.6084/m9.figshare.12838352
title: Data from: Functional and numerical responses do not always indicate the most effective predator for biological control: an analysis of two predators in a two-prey system

description: 1. Functional and numerical responses are key components in the selection of predators for biological control. We examined the relevance of these responses for predicting the effectiveness of generalist predators, taking into account effects of alternative prey and multiple predators. Our system involved two acarine predators of two prey species on apple. Responses were measured on leaf discs in the laboratory, and predictions assessed on small potted apple trees. In particular, we tested three hypotheses.2. Hypothesis I: the species with the higher predatory responses will be more effective in limiting prey populations. Neither predator had a consistently higher functional response, which depended on prey stage and species. <i>Amblyseius fallacis</i> had a (approximately two times) higher ovipositional response than <i>Typhlodromus pyri</i>. We therefore hypothesized that <i>A. fallacis</i> would be more effective in controlling prey. No evidence was found to support this hypothesis.3. Hypothesis II: alternative prey reduce the functional response of predators to target prey. Alternative prey did or did not reduce the functional response to target prey, depending on the predator, stage and species of alternative prey. The only consistent trend for both predators was that the predation of <i>Panonychus ulmi</i> deutonymphs was reduced when <i>Tetranychus urticae</i> was present.4. Hypothesis III: the predator species with the highest mean ovipositional response will out-compete the other predator species. The number of predators observed in the mixed predator treatments depended on the prey composition. Although <i>A. fallacis</i> had a higher ovipositional response, it was never more abundant. Intraguild predation probably played a role in determining predator abundance, although prey composition altered intraguild effects.5. These results highlight the complex nature of predator and prey interactions. Because of these interactions, functional and numerical assays on single predator–single prey systems in simplified laboratory environments do not allow predictions of the growth of mixed populations in realistic habitats, or of the effectiveness of predators as biological control agents in the field.