cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15125/bath-01239
title: Dataset for "Comparing pharmaceutical company payments in the four UK countries: a cross-sectional and social network analysis"

description: This dataset contains all pharmaceutical company payments to healthcare organisations (originally published in Disclosure UK, a database hosted by the Association for the British Pharmaceutical Industry) and patient organisations (originally published on pharmaceutical company websites) in 2015. Following extensive investigative web searches of publicly available organisational data, all recipients have been categorised depending on their role in the healthcare ecosystem and their location in either England, Scotland, Wales or Northern Ireland has been noted. Additional tabs in the dataset provide supplementary descriptive details and a Matrix for each company (indicating the number of recipients targeted by multiple companies).
description: This dataset draws on two data sources:

1) Disclosure UK, a database of pharmaceutical industry payments to healthcare organisations in the UK published annually 

We downloaded the dataset from the Association of the British Pharmaceutical Industry's website and cleaned the data as part of a previous study, in which we also document the process to preparing the data in detail (Ozieranski et al., 2019a).

2) Payments to patient organisations, individual disclosures published on pharmaceutical company websites annually

We downloaded all pharmaceutical industry disclosures published on their individual websites and cleaned the data as part of a previous study, in which we document the process to preparing the data in detail (Ozieranski et al., 2019b)

Our dataset combines the above two datasets.

Ozieranski P, Csanadi M, Rickard E, Tchilingirian J, Mulinari S. Analysis of Pharmaceutical Industry Payments to UK Health Care Organizations in 2015. JAMA Netw Open. 2019a;2(6):e196253. doi:10.1001/jamanetworkopen.2019.6253

Ozieranski P, Rickard E, Mulinari, S. Exposing drug industry funding of UK patient organisations BMJ 2019b; 365 :l1806 doi:10.1136/bmj.l1806
description: We supplemented the data in Disclosure UK and in pharmaceutical company disclosures of payments to patient organisations with additional meta-data on payment recipients' country-level locations to compare payments made in the four UK countries.
description: Disclosure UK version 20160630
DOI: 10.15125/bath-01242
title: Dataset for "Lane nucleation in complex active flows"

description: Experimental data from human crowd experiments on lane nucleation, including processed videos, extracted trajectories, as well as data processing code. 

Code and high-level processed results of agent-based simulations of active binary flows, including hard sphere model, and data-driven model.
description: All methodology information can be found in the main article, and accompanying Supplemental Materials.
DOI: 10.13145/bacdive2575.20240510.9
title: Clostridium cocleatum Kaneuchi et al. 1979

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2576.20240510.9
title: Clostridium collagenovorans Jain and Zeikus 1988

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-01244
title: Dataset for: "Carrier-resolved real-field theory of multi-octave frequency combs"

description: This dataset provides supplementary materials related to the article, "Carrier-resolved real-field theory of multi-octave frequency combs"," published in Optica. The dataset includes raw electric field distributions obtained from simulations based on the equations outlined in the manuscript. Additionally, the dataset contains a comprehensive list of physical parameters utilized in the simulations. Raw .fig Matlab files are also supplied for the visual data presented in the manuscript to improve transparency. For further information, please consult the included Readme file.
description: The data presented in the dataset is the result of the solution of the differential equations described in the main text of the associated manuscript. All necessary parameters and references for the methods used can be found in the main text of the associated manuscript and "figure_parameters.zip" file.
description: MATLAB 2021b was used.
description: Further relevant documentation may be found in the following resources.

   Puzyrev, D. N., and Skryabin, D. V.,  2023.   Carrier-resolved real-field theory of multi-octave frequency combs.    Optica, 10(6), 770.  Available from: https://doi.org/10.1364/optica.487008.
DOI: 10.15125/bath-01245
title: Dataset for "Effects of a Web-Based, Evolutionary Mismatch-Framed Intervention Targeting Physical Activity and Diet: a Randomised Controlled Trial"

description: This dataset contains participant demographic, physical activity, dietary intake, health marker and cognitive determinants of behaviour data in connection with a trial of an intervention to promote physical activity and healthy eating. Both control and intervention group participants are included and data is provided for each of the three assessment points: baseline, 6 weeks (mid-trial) and 12-weeks (end of trial).
description: The methodology can be found in the associated article.
DOI: 10.13145/bacdive2577.20240510.9
title: Clostridium cylindrosporum (ex Barker and Beck 1942) Andreesen et al. 1985

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2582.20240510.9
title: Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-01260
title: Dataset for "Anion-polarisation–directed short-range-order in antiperovskite Li2FeSO"

description: This dataset contains the DFT calculations used in the paper "Anion-polarisation–directed short-range-order in antiperovskite Li2FeSO". This consists of three constituent parts: cluster expansion training calculations, relaxation of large shells, and Wannierisaton analysis of structures of interest. These calculations feed into an additional python workflow which is located on GitHub and is associated with the DOI 10.5281/zenodo.7828910 (see data link below).
description: All data included in this dataset has been generated using the VASP DFT code. The methodology can be found in the associated paper.
description: Further relevant documentation may be found in the following resources.

   Coles, S. W., Falkowski, V., Geddes, H. S., Pérez, G. E., Booth, S. G., Squires, A. G., O'Rourke, C., McColl, K., Goodwin, A. L., Cussen, S. A., Clarke, S. J., Islam, M. S., and Morgan, B. J.,  2023.   Anion-polarisation-directed short-range-order in antiperovskite Li2FeSO.    Journal of Materials Chemistry A, 11(24), 13016-13026.  Available from: https://doi.org/10.1039/d2ta10037a.
DOI: 10.13145/bacdive2585.20240510.9
title: Clostridium fallax (Weinberg and Séguin 1915) Bergey et al. 1923

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-01265
title: Dataset for "What Should Inpatient Psychological Therapies be for?  Qualitative Views of Service Users on Outcomes"

description: This data outlines the views of 14 participants who had an inpatient admission within the last year, on what outcomes they think are important to measure in psychological therapy trials in acute mental health inpatient wards. This data includes the 14 transcripts of the qualitative semi-structured interviews.
description: The interview schedule was piloted with a Person with Personal Experience Researcher (LC) and included questions adapted from a previous Core Outcome Set study (Tyler et al., 2020).  The semi-structured interviews were conducted remotely by either video call or telephone and audio-recorded for transcription.
description: The transcripts were anonymised and demographic details were removed.  The data includes the transcription from the first question to the final question.
description: The transcripts are in Microsoft Word format.
description: Transcription was completed following the Transcription Notation System for Orthographic Transcription (revised from Braun & Clarke, 2013).
description: Further relevant documentation may be found in the following resources.

   Tyler, N., Wright, N., Grundy, A., and Waring, J.,  2020.   Developing a core outcome set for interventions to improve discharge from mental health inpatient services: a survey, Delphi and consensus meeting with key stakeholder groups.    BMJ Open, 10(5), e034215.  Available from: https://doi.org/10.1136/bmjopen-2019-034215.
DOI: 10.15125/bath-01266
title: Code and data for "Degeneracy and stability in neural circuits of dopamine and serotonin neuromodulators: A theoretical consideration"

description: Degeneracy of a neural circuit is the ability of the neural circuit to produce the same output despite being structurally different. Our model gives an insight into the possibility of degeneracy at the source level of the neural circuits, i.e. at the level of neuromodulators. This dataset contains code and data to plot activity profiles of a particular model and compute the maximum percentage of deviations of the activity profiles of neuronal populations of a particular model, from their experimental values; to generate activity profiles as per the experimental outcomes in the associated paper; and to perform stability analysis for the models described in the manuscript, both individually and together.
description: Please see the associated paper.
description: These files correspond to commit 7ed2e5f in the Git repository.
DOI: 10.15125/bath-01271
title: Dataset for "How Harassment is Depriving Universities of Talent: A national survey of STEM academics in the UK"

description: We recruited 835 faculty members from 40 universities in the United Kingdom (UK) via our networks within UK STEM departments. Participants were drawn from various STEM departments, including biological science (18%), computer science (7%), engineering (28%) mathematical science (16%), and physics (13%). Respondents completed an online survey in which details about their employment were collected at the beginning and additional demographic information was collected at the end. The middle section of the survey contained measures of: identity and career perceptions; staying in academia; collaborative working style, received opportunities; workplace diversity and inclusion and affective workplace climate; experience of harassment; and assessment of a workshop intervention.
description: An cross sectional online survey was conducted via Qualtrics. The survey was distributed via networks to STEM Departments across the UK. The full data set is contained in the SPSS file. Coding of the data and creation of new variables in contained in the R-script. Also contained in the R-script is analysis associated with a paper testing a model predicting intentions to leave academia.
description: R Script included to assist in interpretation of coding and analysis.
DOI: 10.13145/bacdive2586.20240510.9
title: Clostridium felsineum (Carbone and Tombolato 1917) Bergey et al. 1939

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-01273
title: Oolong Tea Project Dataset for "Postprandial metabolic responses to high-fat feeding in healthy adults following ingestion of oolong tea-derived polymerized polyphenols: a randomized, double-blinded, placebo-controlled crossover study"

description: This dataset contains data for 50 participants who completed the 4-arm Oolong Tea Project study. Data are participant sex, age, height, and weight, along with 3-hour meal tolerance test response data. These data are serum triacylglycerol, and plasma triacylglycerol, insulin, C-peptide, non-esterified fatty acids (NEFA), glycerol, high-density lipoprotein cholesterol, low-density lipoprotein cholesterol, glucose, and apolipoproteins AI, AII, B, CII, CIII, and E. Timepoints were 0 mins (pre-ingestion of treatment), and 30, 60, 90, 120, and 180 minutes. Treatments were 100mg polymerized polyphenols from oolong tea, 150mg polymerized polyphenols from oolong tea, and 100mg polymerized polyphenols from oolong tea plus 50 mg caffeine and 63 mg catechins, versus a placebo with no active ingredients.
description: 10 mL blood samples collected from a canula inserted into the antecubital vein were drawn into a syringe, and immediately dispensed into untreated serum tubes with silicate clotting activator, and tripotassium ethylenediaminetetraacetic acid (K3 EDTA) treated tubes (both Sarstedt, Nümbrecht, Germany) for serum and plasma separation respectively. Before centrifugation, blood samples for serum separation were allowed to clot at room temperature for 20 minutes. Samples were centrifuged at 1300 g for 15 minutes at 4°C, then supernatant was immediately aliquoted, frozen on dry ice, and stored at -80°C for later analysis.

Serum TG, and plasma TG, NEFA, glycerol, glucose, HDL-c, LDL-c, and ApoA-I, A-II, B, C-II, C-III, and E, were measured with commercially available spectrophotometric assays (Daytona Rx, Randox, Crumlin, UK) as per the manufacturer’s instructions. Commercially available enzyme linked immunosorbent assay (ELISA) was used to determine concentrations of plasma insulin (Mercodia, Uppsala, Sweden) and C-peptide (MilliporeSigma, Massachusetts, USA).
DOI: 10.15468/dl.t5a3z3
title: Occurrence Download

description: A dataset containing 351 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphinx morio Rothschild & Jordan, 1903"
 ]
}

 The dataset includes 351 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022838-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9434318
title: World Weather Repository ( Daily Updating )
DOI: 10.13145/bacdive2587.20240510.9
title: Clostridium formicaceticum Andreesen et al. 1970

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-01275
title: Dataset for the results of fibrous plaster tests: Pull-off samples tensile tests.

description: The data concerns the tests conducted to date concerning fibrous plaster pull-off test samples. Samples were made and tested in the laboratories of the University of Bath. Tensile tests were performed on 'pull-off' samples where an attached cylinder was pulled from a base plate to test the adhesion of the cylinder material to the base plate material.
description: Pull-Off: Twelve specimens each from multiple sample groups which consisted of a new cylinder element attached to a base plate, and the cylinder pulled off the base plate using tensile loading on a bespoke test rig. Sample groups included both hessian and quadaxial glass fibres, gypsum plaster, jesmonite and aramid gel. Bases were both clean and 'dirty' - with historic mould applied.
description: Pull-off: 100 kN capacity test rig Dartec Universal Testing Machine, displacement controlled tensile loading at 0.2 mm/min.
description: Data is available in Microsoft Excel spread sheets and Origin software output.
DOI: 10.15125/bath-01278
title: Dataset for "Closing the loop in open-source microscopy: Automated focus, scanning, image tiling and resolution calibration on the OpenFlexure Microscope"

description: Data for the thesis "Closing the loop in open-source microscopy: Automated focus, scanning, image tiling and resolution calibration on the OpenFlexure Microscope". The dataset consists of two image collections:

- a collection of sets of images for tiling and stitching together, used to test the effectiveness of a Python tiling program;
- a collection of aligned edge images used to assess the resolution of a microscope.
description: The images were all collected automatically on the OpenFlexure Microscope, as described in the respective chapters of the linked thesis, using the included tiling and stitching code and the Bath Open Instrumentation Group's Micat resolution code.
description: Please see the Micat documentation for its technical requirements. The included code requires Python 3.8+ and the packages listed in `requirements.txt`.
description: The tiling and stitching code included here corresponds to commit bd1e0797 in the Git repository. The auto_mtf code corresponds to commit 73c62c44. The code for the usafcal extension to Micat corresponds to commit 4b7aeed3.
description: Further relevant documentation may be found in the following resources.

   Stirling, J., and Collins, J.,  2020.   Micat: Microscopy Calibration and Testing using USAF resolution targets.         GitLab.   Available from: https://gitlab.com/bath_open_instrumentation_group/micat.
DOI: 10.13145/bacdive2596.20240510.9
title: Terrisporobacter glycolicus (Gaston and Stadtman 1963) Gerritsen et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2601.20240510.9
title: Hathewaya histolytica (Weinberg and Séguin 1916) Lawson and Rainey 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-01279
title: Data for "Azimuthal confinement: the missing ingredient in understanding confinement loss in antiresonant, hollow-core fibres"

description: This dataset contains all the underlying data used in Figures 4 to 7 of the associated paper. The paper is a theoretical and computational analysis of the guidance mechanism and confinement loss in antiresonant, hollow-core optical fibres. The data includes the results of both simplified theoretical models and large scale numerical calculations for a set of cladding structures that demonstrate the effects of azimuthal confinement.
description: All the methodology used in creating this dataset is described in the associated paper.
description: Further relevant documentation may be found in the following resources.

   Murphy, L. R., and Bird, D.,  2023.   Azimuthal confinement: the missing ingredient in understanding confinement loss in antiresonant, hollow-core fibers.    Optica, 10(7), 854.  Available from: https://doi.org/10.1364/optica.492058.
DOI: 10.15125/bath-01283
title: Data supporting the paper "Trapping of ultrashort pulses in non-degenerate parametric conversion"

description: The dataset consists of several MATLAB data files (*.mat), corresponding to the figures in the paper. The naming of the files is self-explanatory. Each MATLAB file contains all variables (as arrays) used in each plot. For 2D plots, there are separate 1D arrays for x- and y- coordinates, i.e., if there are several lines in a plot, there will be several corresponding variables for the y-coordinates of each line. For surface plots, all variables are stored as 2D arrays.
description: Full details of the methodology may be found in the associated paper.
DOI: 10.13145/bacdive2602.20240510.9
title: Lacrimispora indolis (McClung and McCoy 1957) Haas and Blanchard 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2603.20240510.9
title: Clostridium innocuum Smith and King 1962

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-01282
title: Dataset for PhD thesis: Life Cycle of Renewable Electricity Technologies: equimarginal incremental cost determination of ex-ante targets

description: This dataset includes life cycle inventories for assessing environmental aspects and potential impacts of electricity generation and supply options in Lebanon. The software SimaPro was used to conduct Life Cycle Assessement (LCA) of these options.

Specifically, the dataset includes life cycle inventories for electricity generation systems (photovoltaic [PV], concentrated solar power [CSP], wind power, hydropower); electricity supply options (lead-acid battery, electricity grid); the end-of-life scenario for photovoltaic systems, with and without lead-acid batteries; and cement production. It also contains net-present value (NPV) and levelised cost of electricity (LCOE) calculations for the four electricity generation systems examined.

The dataset supports the PhD thesis "Life Cycle of Renewable Electricity Technologies: equimarginal incremental cost determination of ex-ante targets".
description: Changes in values were introduced in the datasets of Ecoinvent. By copying an existing process in the Ecoinvent datasets, values appropriate and representative to Lebanon are then introduced/changed. Irrelevant sub-processes are deleted. The final result preserves of the integrity of the original dataset while the values are "localised" to reflect the local conditions. 

For the NPV and LCOE calculations, once the capital expenditure (CAPEX) and operating expenditure (OPEX) are determined, the discount rate and lifetime were chosen based on the technology. The formula for calculating both the LCOE and the NPV were then introduced in the MS Excel spreadsheet and calculations executed.
description: The files were exported from SimaPro version 9, apart from the spreadsheet containing the NPV and LCOE calcuations. The spreadsheets are in Microsoft Excel (.xlsx) format.
DOI: 10.15125/bath-01293
title: Dataset on the association between unilateral and UN operations and the number of fatalities of organised violence

description: This dataset is created for the study of the association between unilateral and UN operations and fatalities of organised violence. It links fatality statistics from Uppsala Conflict Data Program to data on UN peacekeeping operations and unilateral operations by great powers (UNSC P5) in 38 countries.

Definitions and data is further explained and justified in the associated publication, "Whose Conflict Prevention Works: Strong States vs. The Legitimate World Organisation" by Timo Kivimäki.
description: The methodology used to assemble the Uppsala Conflict Data Program Georeferenced Event Dataset (GED) can be found in Sundberg and Melander (2013).

The timeline of operations by the UN and unilateral great powers has been explained and justified in the chapter associated with this dataset. The included do file shows the steps taken to derive this dataset.
description: The dataset was created with the Stata/BE 17 program, and it was exported to MS Excel for tables and further calculations. The do file can be opened with any text editor.
description: Further relevant documentation may be found in the following resources.

   Sundberg, R., and Melander, E.,  2013.   Introducing the UCDP Georeferenced Event Dataset.    Journal of Peace Research, 50(4), 523-532.  Available from: https://doi.org/10.1177/0022343313484347.