cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh123687.07fu
title: SH123687.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh123688.07fu
title: SH123688.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh123689.07fu
title: SH123689.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh123690.07fu
title: SH123690.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh123691.07fu
title: SH123691.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh123692.07fu
title: SH123692.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh123693.07fu
title: SH123693.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.n2zmah
title: Occurrence Download

description: A dataset containing 6906 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amphipoda, Cumacea, Decapoda, Euphausiacea, Isopoda, Leptostraca, Lophogastrida, Mysida, Stomatopoda, Tanaidacea, Akentrogonida, Arguloida, Dendrogastrida, Kentrogonida, Laurida, Pedunculata, Pygophora, Sessilia, Myodocopida)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 "Year is greater than or equal to 1970",
 "CoordinateUncertaintyInMeters is less than 3000"
 ]
}

 The dataset includes 6906 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021352-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34808/10gm-qm19
title: Neoplasm, metastatic - Male, 75 - Tissue image [10010729534335491]

description: This is the histopathological image of BRONCHUS AND LUNG tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 75Clinical description: A tumor of the right upper lobe of the lung, 2 cm in diameter; located peripherially; without pleural infiltration.
In the clinical history, the state after surgery and radiotherapy in 2004. due to adenoid cystic carcinoma of sinusesGender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: NEOPLASMS, NOSDiagnosis: Neoplasm, metastaticResult of the histopathological examination: Lung metastasis of Adenoid cystic carcinoma
CD117 - positive staining in luminal cells (ductal/epithelial component)Sample:Material: FFPECollecting method: Surgical specimenTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: BRONCHUS AND LUNGTissue: Upper lobe, lungType of staining: positive/IHCStaining: Not applicableAntibody: CD 117Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/7mxz-7b81
title: Oncocytoma - Male, 70 - Tissue image [5160730021353341]

description: This is the histopathological image of KIDNEY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 70Clinical description: 2,7 x 2,2 x 1,5 cm tumor of right kidney.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: OncocytomaResult of the histopathological examination: Oncocytoma of kidney: CD117+, CK7-, Ki-67 2%.Sample:Material: FFPECollecting method: Excision of lesionsTopography: URINARY TRACTOrgan: KIDNEYTissue: Kidney, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/7jgkah
title: Myodes glareolus - 35707, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-06-18, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/b1qv-vx58
title: Basal cell carcinoma, NOS - Male, 90 - Tissue image [10100730045413381]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 90Clinical description: 2,1 x 2,1 cm ulcerated lesion of skin of face.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: BASAL CELL NEOPLASMSDiagnosis: Basal cell carcinoma, NOSResult of the histopathological examination: Basal cell carcinoma of skin.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of faceType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/70sk-m178
title: Wilms tumor - Female, 4 - Tissue image [5070730026203821]

description: This is the histopathological image of KIDNEY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 4Clinical description: Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: COMPLEX MIXED AND STROMAL NEOPLASMSDiagnosis: Wilms tumorResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: URINARY TRACTOrgan: KIDNEYTissue: Kidney, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/pevg-0008
title: Endometrioid adenocarcinoma, NOS - Female, 74 - Tissue image [5160730021343601]

description: This is the histopathological image of VAGINA tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 74Clinical description: Tumor of vagina, diameter 1 cm.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Endometrioid adenocarcinoma, NOSResult of the histopathological examination: Endometrioid endometrial carcinoma: PAX8+, VIM+, CK7+, p16 focally+, CK20-.Sample:Material: FFPECollecting method: Excision of lesionsTopography: FEMALE GENITAL ORGANSOrgan: VAGINATissue: Vagina, NOSType of staining: positive/IHCStaining: Not applicableAntibody: PAX8Technology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/wc4g9h
title: Myodes glareolus - 166381, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1997-09-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/26xd-xg25
title: Oncocytoma - Female, 64 - Tissue image [5160730021333451]

description: This is the histopathological image of KIDNEY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 64Clinical description: 1,2 x 0,8 x 0,8 cm tumor of right kidney.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: OncocytomaResult of the histopathological examination: Oncocytoma of kidney: PAX8+, CD117+, CAM 5.2 focally+, CK7 focally+, TTF1-, RCC-, VIM-, Ki-67 1%.Sample:Material: FFPECollecting method: Excision of lesionsTopography: URINARY TRACTOrgan: KIDNEYTissue: Kidney, NOSType of staining: positive/IHCStaining: Not applicableAntibody: VimentinTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/nzp6-by94
title: Neoplasm, malignant - Male, 62 - Tissue image [12020630021678761]

description: This is the histopathological image of BRONCHUS AND LUNG tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 62Clinical description: Tumor of the lungGender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: NEOPLASMS, NOSDiagnosis: Neoplasm, malignantResult of the histopathological examination: Adenocarcinoma of the lung
CK20 (-)Sample:Material: FFPECollecting method: Surgical specimenTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: BRONCHUS AND LUNGTissue: Lung, NOSType of staining: positive/IHCStaining: Not applicableAntibody: CK 20Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/5s8i2r
title: Myodes glareolus - 28760, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1962-08-17, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/7efz-ev71
title: Malignant rhabdoid tumor - Male, 5 - Tissue image [5040730028017611]

description: This is the histopathological image of LIVER AND INTRAHEPATIC BILE DUCTS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 5Clinical description: Tumor of the liver.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: COMPLEX MIXED AND STROMAL NEOPLASMSDiagnosis: Malignant rhabdoid tumorResult of the histopathological examination: Rhabdoid tumor of the liver. IHC: INI1 - negative, desmin (-), MyoD1 (-), Glutathione synt. focal +, GPC3 focal +, CKAE 1/3+, CK19+, SMA+, CD34 focal+, Hepar (-), B-catenin membrane and cytoplasmic reaction in some cells.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: LIVER AND INTRAHEPATIC BILE DUCTSTissue: LiverType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/ya0g-5x43
title: Neoplasm, malignant - Female, 4 - Tissue image [5180730014265381]

description: This is the histopathological image of OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 4Clinical description: Tumor of the true pelvis.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEOPLASMS, NOSDiagnosis: Neoplasm, malignantResult of the histopathological examination: Rhabdomyosarcoma, embryonal type, partially spindle cell pattern.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANSTissue: Female genital organs, NOSType of staining: positive/HEStaining: Hematoxylin & eosinAntibody: Not applicableTechnology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/b9lavy
title: Myodes glareolus - 156997, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1988-05-21, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/97pf-4f04
title: Urothelial carcinoma in situ - Female, 73 - Tissue image [515073001871701]

description: This is the histopathological image of BLADDER tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 73Clinical description: History of infiltrating urothelial carcinoma of urinary bladder (pT2) and chemotherapy.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: TRANSITIONAL CELL PAPILLOMAS AND CARCINOMASDiagnosis: Urothelial carcinoma in situResult of the histopathological examination: Urothelial carcinoma in situ of urinary bladder.Sample:Material: FFPECollecting method: Surgical specimenTopography: URINARY TRACTOrgan: BLADDERTissue: Bladder, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/facapj/fzt7zk
title: m-4545.tif

description: :unav
DOI: 10.34808/8s4e-8p11
title: Ulcerative colitis, unspecified - Male, 51 - Tissue image [4090730007926741]

description: This is the histopathological image of COLON tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 51Clinical description: Colitis ulcerosa.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XI - Diseases of the digestive systemDiagnosis: Ulcerative colitis, unspecifiedResult of the histopathological examination: Chronic active colitis with erosions, crypt microabscesses  and plasmocytic reaction. General view of IBD ulcerative colitis type.Sample:Material: FFPECollecting method: Surgical biopsyTopography: DIGESTIVE ORGANSOrgan: COLONTissue: Colon, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/1pm5-c863
title: Pulmonary oedema - Male, 56 - Tissue image [10060730015619891]

description: This is the histopathological image of BRONCHUS AND LUNG tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 56Clinical description: Myocarditis. Cardiac arrest. Shock.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter X - Diseases of the respiratory systemDiagnosis: Pulmonary oedemaResult of the histopathological examination: Acute pulmonary congestion, edema, fresh haemorrhages to alveoli; locally more lymphocytes present in the septa.Sample:Material: FFPECollecting method: Autopsy specimenTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: BRONCHUS AND LUNGTissue: Lung, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/facapj/4g0ssk
title: 4545.S3Dm

description: :unav
DOI: 10.34808/1kr2-5c24
title: CERVIX UTERI, Cervical canal - Female, 57 - Tissue image [3220630024676291]

description: This is the histopathological image of CERVIX UTERI tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 57Clinical description: The tumor of the left ovary.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: The endocervix is free of cancer.Sample:Material: FFPECollecting method: Autopsy specimenTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: Cervical canalType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk