cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7905350
title: Sustained hypoxemia in late gestation potentiates hepatic gluconeogenic gene expression but does not activate glucose production in the ovine fetus

description: Authors: Amanda K. Jones<sup>1</sup>, Paul J. Rozance<sup>1</sup>, Laura D. Brown<sup>1</sup>, David A. Goldstrohm<sup>1</sup>, William W. Hay Jr.<sup>1</sup>, Sean W. Limesand<sup>2</sup>, Stephanie R. Wesolowski<sup>1</sup><br><sup>1</sup>Department of Pediatrics, University of Colorado School of Medicine, Aurora CO; <sup>2</sup>School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, AZ<br>Supplementary Figures 1 and 2, describing maternal and fetal arterial blood gas responses during sustained hypoxemia.
DOI: 10.6084/m9.figshare.7905362.v1
title: Model results

description: Model results -analytical solutions<br>
DOI: 10.6084/m9.figshare.7905326
title: CCDB_3645.jpg

description: Image from the reconstructed volume of the Caulobacter Crescentus specimen. This particular image was taken from Z-slice #307
DOI: 10.6084/m9.figshare.7905350.v1
title: Sustained hypoxemia in late gestation potentiates hepatic gluconeogenic gene expression but does not activate glucose production in the ovine fetus

description: Authors: Amanda K. Jones<sup>1</sup>, Paul J. Rozance<sup>1</sup>, Laura D. Brown<sup>1</sup>, David A. Goldstrohm<sup>1</sup>, William W. Hay Jr.<sup>1</sup>, Sean W. Limesand<sup>2</sup>, Stephanie R. Wesolowski<sup>1</sup><br><sup>1</sup>Department of Pediatrics, University of Colorado School of Medicine, Aurora CO; <sup>2</sup>School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, AZ<br>Supplementary Figures 1 and 2, describing maternal and fetal arterial blood gas responses during sustained hypoxemia.
DOI: 10.6084/m9.figshare.7905308
title: 012518 DHT AR Supplement table 1. primer table.docx

description: Primer list
DOI: 10.6084/m9.figshare.7905323
title: Supplement primer table 1.docx

description: primer list
DOI: 10.6084/m9.figshare.7905308.v1
title: 012518 DHT AR Supplement table 1. primer table.docx

description: Primer list
DOI: 10.6084/m9.figshare.7905323.v1
title: Supplement primer table 1.docx

description: primer list
DOI: 10.6084/m9.figshare.7905326.v1
title: CCDB_3645.jpg

description: Image from the reconstructed volume of the Caulobacter Crescentus specimen. This particular image was taken from Z-slice #307
DOI: 10.6084/m9.figshare.7905158
title: Supplemental data for "Divergence and support among slightly suboptimal likelihood gene trees"

description: Data matrices, optimal and consensus trees, branch support (bootstrap and SH-like aLRT) and Excel files of raw data
DOI: 10.6084/m9.figshare.7905158.v1
title: Supplemental data for "Divergence and support among slightly suboptimal likelihood gene trees"

description: Data matrices, optimal and consensus trees, branch support (bootstrap and SH-like aLRT) and Excel files of raw data
DOI: 10.6084/m9.figshare.7905032
title: Behavioral analysis data

description: Behavioral data organized in wide format for analysis with JASP software.<br>
DOI: 10.6084/m9.figshare.7905038
title: Binned MSE data analysis

description: Binned MSE data organized in wide format for analysis with JASP software.
DOI: 10.6084/m9.figshare.7905041
title: Raw MSE data

description: Dataset used for correlation analyses and PLS.<br>
DOI: 10.6084/m9.figshare.7905074
title: CLINICOPATHOLOGICAL REVIEW OF APPENDICECTOMY SPECIMEN IN A TROPICAL MISSION HOSPITAL

description: <b>BACKGROUND:</b> Acute appendicitis remains a common surgical condition and the importance of specific elements in the clinical diagnosis remain controversial. It is a disease of the young presenting in children and early adolescents although no age group is exempt. This clinicopathological study aims to determine the various lesions of the surgically removed appendix in a resource constrained mission hospital setting, northwestern Cameroon. <b>METHOD:</b> This retrospective cross-sectional descriptive study was undertaken to review the histo-pathology reports of all appendectomy specimens submitted to the Pathology department, Central Laboratory of a Mission Hospital; Northwestern region of Cameroon from January 2011 to January 2016. Patient’s socio-demographical data, clinical presentations were extracted from the request form. The data were analyzed using the SPSS version 22 and presented with descriptive and inferential statistics. <b>RESULTS:</b> A total of 683 appendices were received during the 5-year study period constituting about 12% of total specimens. The age range of patients in this study is 14–78 years with a mean of 20.12 ± 5.12 years. Acute appendicitis was found in 86.9% of our cases while other lesions constitute 13.1% and negative appendectomy occurred in 4.5% of the cases. <b>CONCLUSION:</b> The incidence of acute appendicitis remains low especially in the rural communities of Africa. We therefore conclude that the current study spanned the entire gamut of pathological processes that involve the appendix and provides a fair idea about the clinicopathological correlation in appendectomy specimens. <b>KEYWORDS: Acute abdomen; Appendix; Appendectomy; Histology; Resource-constrained setting</b> <b> </b> <b> </b> <b> </b> <b> </b>
DOI: 10.6084/m9.figshare.7905038.v1
title: Binned MSE data analysis

description: Binned MSE data organized in wide format for analysis with JASP software.
DOI: 10.6084/m9.figshare.7905041.v1
title: Raw MSE data

description: Dataset used for correlation analyses and PLS.<br>
DOI: 10.6084/m9.figshare.7905074.v1
title: CLINICOPATHOLOGICAL REVIEW OF APPENDICECTOMY SPECIMEN IN A TROPICAL MISSION HOSPITAL

description: <b>BACKGROUND:</b> Acute appendicitis remains a common surgical condition and the importance of specific elements in the clinical diagnosis remain controversial. It is a disease of the young presenting in children and early adolescents although no age group is exempt. This clinicopathological study aims to determine the various lesions of the surgically removed appendix in a resource constrained mission hospital setting, northwestern Cameroon. <b>METHOD:</b> This retrospective cross-sectional descriptive study was undertaken to review the histo-pathology reports of all appendectomy specimens submitted to the Pathology department, Central Laboratory of a Mission Hospital; Northwestern region of Cameroon from January 2011 to January 2016. Patient’s socio-demographical data, clinical presentations were extracted from the request form. The data were analyzed using the SPSS version 22 and presented with descriptive and inferential statistics. <b>RESULTS:</b> A total of 683 appendices were received during the 5-year study period constituting about 12% of total specimens. The age range of patients in this study is 14–78 years with a mean of 20.12 ± 5.12 years. Acute appendicitis was found in 86.9% of our cases while other lesions constitute 13.1% and negative appendectomy occurred in 4.5% of the cases. <b>CONCLUSION:</b> The incidence of acute appendicitis remains low especially in the rural communities of Africa. We therefore conclude that the current study spanned the entire gamut of pathological processes that involve the appendix and provides a fair idea about the clinicopathological correlation in appendectomy specimens. <b>KEYWORDS: Acute abdomen; Appendix; Appendectomy; Histology; Resource-constrained setting</b> <b> </b> <b> </b> <b> </b> <b> </b>
DOI: 10.6084/m9.figshare.7905020
title: Raw Data AMH EVJ.xlsx

description: Background: Tracheal collapse in horses is reportedly uncommon; however, American Miniature Horses are more commonly affected. To the authors’ knowledge, there is no description of the tracheal luminal diameter of normal sample of American Miniature Horses, making early detection of tracheal luminal narrowing difficult.Objectives: To 1) describe radiographic tracheal luminal diameter in clinically normal American Miniature Horses, 2) report the prevalence of tracheal collapse in a population of subclinical American Miniature Horses, and 3) use tracheal video fluoroscopy to quantify variation in tracheal luminal diameter throughout the respiratory cycle in American Miniature Horses with no history or clinical signs of respiratory disease.<br>
DOI: 10.6084/m9.figshare.7905020.v1
title: Raw Data AMH EVJ.xlsx

description: Background: Tracheal collapse in horses is reportedly uncommon; however, American Miniature Horses are more commonly affected. To the authors’ knowledge, there is no description of the tracheal luminal diameter of normal sample of American Miniature Horses, making early detection of tracheal luminal narrowing difficult.Objectives: To 1) describe radiographic tracheal luminal diameter in clinically normal American Miniature Horses, 2) report the prevalence of tracheal collapse in a population of subclinical American Miniature Horses, and 3) use tracheal video fluoroscopy to quantify variation in tracheal luminal diameter throughout the respiratory cycle in American Miniature Horses with no history or clinical signs of respiratory disease.<br>
DOI: 10.6084/m9.figshare.7905032.v1
title: Behavioral analysis data

description: Behavioral data organized in wide format for analysis with JASP software.<br>
DOI: 10.6084/m9.figshare.7904564
title: Sandel and Low 2019 (Grass traits in Marin County).zip

description: Measurements of grass functional traits and community composition from Marin County, CA, April-May 2017.<br>There are three CSV files. They are linked by the Site-Plot combination. The first describes grass trait measurements, the second describes the location and environment at sampling locations and the third is a community matrix with abundance measures for all species in 5x5m vegetation plots at these locations. Not all trait measurements are associated with sampling plots, and not all sampling plots have trait measurements.<br><br>Field description:<br>Site: Text description of the open space reserve where the sample was collected<br>Species: Text: species binomial (following Jepson manual)<br><br>Plot: Text: A plot identifier, which combined with Site constitutes a unique identifier for a sampling location. Information on these locations is contained in the Marin 2017 sampling locations.csv file.<br>Date: Sampling date<br>Latitude and Longitude: The coordinates of the sampling location<br>Soil: Text: Description of the soil texture<br><br>Bare.ground, Thatch and Rock: Field percent cover estimates of bare ground, dead thatch and rock.<br>Slope, aspect: Numeric: measured in degrees, the topographic slope and aspect. <br>Soil: Text: Soil type description<br><br>AP: Numeric: Annual precipitation (mm) from PRISM climate data.<br>MAT: Numeric: Mean annual temperature (C) from PRISM.<br>TS: Numeric: Temperature seasonality (C) from PRISM.<br>ID: Text: An individual plant identifier. Combined with Site and Plot constitutes a unique identifier for an individual grass.<br>Area: Numeric: The area of a leaf (cm2)<br>Height: Numeric: The height of the plant (cm)<br>Width: Numeric: The width of a leaf (mm)<br>Length: Numeric: The length of a leaf (cm)<br>Thick: Numeric: The thickness of a leaf (mm)<br>Mass: Numeric: The dry mass of a leaf (g)
DOI: 10.6084/m9.figshare.7904564.v1
title: Sandel and Low 2019 (Grass traits in Marin County).zip

description: Measurements of grass functional traits and community composition from Marin County, CA, April-May 2017.<br>There are three CSV files. They are linked by the Site-Plot combination. The first describes grass trait measurements, the second describes the location and environment at sampling locations and the third is a community matrix with abundance measures for all species in 5x5m vegetation plots at these locations. Not all trait measurements are associated with sampling plots, and not all sampling plots have trait measurements.<br><br>Field description:<br>Site: Text description of the open space reserve where the sample was collected<br>Species: Text: species binomial (following Jepson manual)<br><br>Plot: Text: A plot identifier, which combined with Site constitutes a unique identifier for a sampling location. Information on these locations is contained in the Marin 2017 sampling locations.csv file.<br>Date: Sampling date<br>Latitude and Longitude: The coordinates of the sampling location<br>Soil: Text: Description of the soil texture<br><br>Bare.ground, Thatch and Rock: Field percent cover estimates of bare ground, dead thatch and rock.<br>Slope, aspect: Numeric: measured in degrees, the topographic slope and aspect. <br>Soil: Text: Soil type description<br><br>AP: Numeric: Annual precipitation (mm) from PRISM climate data.<br>MAT: Numeric: Mean annual temperature (C) from PRISM.<br>TS: Numeric: Temperature seasonality (C) from PRISM.<br>ID: Text: An individual plant identifier. Combined with Site and Plot constitutes a unique identifier for an individual grass.<br>Area: Numeric: The area of a leaf (cm2)<br>Height: Numeric: The height of the plant (cm)<br>Width: Numeric: The width of a leaf (mm)<br>Length: Numeric: The length of a leaf (cm)<br>Thick: Numeric: The thickness of a leaf (mm)<br>Mass: Numeric: The dry mass of a leaf (g)
DOI: 10.6084/m9.figshare.7904945.v2
title: project management.pdf

description: تعریف پروژه، نمودار های کنترل پروژه<br>
DOI: 10.6084/m9.figshare.7902353
title: Appendix and Data for "The intimate link between income levels and life expectancy: Global evidence from 213 years"

description: This fileset contains the appendix and replication data for the paper entitled "The intimate link between income levels and life expectancy: Global evidence from 213 years" published in Social Science Quarterly by Michael Jetter, Sabine Laudage and David Stadelmann<br>Abstract: Objectives - What is the main driver of life expectancy across societies and over time? This study aims to document a systematic and quantitatively sizeable relationship between income levels and life expectancy. Method - Using different regression methods and robustness tests, a panel dataset of 197 countries over 213 years is analyzed. Results - By itself, GDP per capita explains more than 64 percent of the variation in life expectancy. The Preston curve prevails, even when accounting for country- and time-fixed effects, country-specific time trends, and alternative explanatory variables, such as health care expenditure, malaria prevalence, or political institutions. If anything, this link has become stronger over recent decades when data quality has improved. Results from instrumental variable estimations suggest this finding to be largely unaffected by reverse causality. Quantile regression results suggest the relationship between income and life expectancy to be persistent across different levels of life expectancy. Conclusions - Income matters for life expectancy. If policymakers want to prolong people's lives, economic growth appears to be the predominant medicine.
DOI: 10.25345/c51n1r
title: MassIVE MSV000086027 - 2020_LCMS_CdifficilePGs_deacetylation
title: peptidoglycan analysis of C.diff wild-type and mutants.
DOI: 10.6084/m9.figshare.7902329
title: Supplementary Material for: Decreased Amino Acid Concentrations are Involved in Congenital Heart Disease

description: <b><i>Objective:</i></b> Congenital heart disease (CHD) is the most common malformation in China. In this study, we determined whether amino acids (AAs) in the amniotic fluid (AF) of patients with CHD changed and clarified whether AAs would affect the insulin-like growth factor type 1 receptor (IGF1R). <b><i>Method:</i></b> Fifty-seven AF samples from pregnant women carrying CHD-aﬀected (<i>n</i> = 17) or normal (<i>n</i> = 40) fetuses were collected. The AA concentrations were measured in AF by liquid chromatography-tandem mass spectrometry. The IGF axis-related and epigenetic marker proteins in AF after serial treatments were quantified using a multiple reaction monitoring approach. IGF1R and P300 were also confirmed by Western blot in AF without any treatment. <b><i>Results:</i></b> Most AAs decreased in the AF of patients with CHD. P300 and IGF1R decreased significantly in the CHD group. When H9C2 cells were cultured in one-half AA concentrations, the expression of P300 and IGF1R was reduced. Histone acetylation of the IGF1R promoter also decreased. <b><i>Conclusion:</i></b> Our data suggest that AAs decreased in the AF of patients with CHD. AAs may partly regulate the IGF1R through P300, which may be involved in heart development.
DOI: 10.6084/m9.figshare.7902299
title: Data Availability for PLOS ONE: "Mitigating the effects of granular scattering using cepstrum analysis in terahertz time-domain spectral imaging"

description: <b>"ref1.txt"</b>, <b>"ref2.txt"</b>, and <b>"ref3.txt"</b> are the air reference THz signals. The data includes the time axis and THz-TDS signal.<br>The raw sample data is provided as follows:<br><b>"osman_imgData_TDS_signal.mat" (variable named "imgData")</b> is the THz-TDS signal and<b> "osman_imgTime_time_axis.mat" (variable named "imgTime")</b> is the corresponding time axis. The first dimension represents the pixel in the x-axis, the second dimension represents the pixels in the y-axis, the third dimension represents the scattering angle (in this order: theta_{0}, theta_{-5}, theta_{-4}, theta_{-3}, theta_{-2}, theta_{-1}, theta_{1}, theta_{2}, theta_{3}, theta_{4}, theta_{5}), and the fourth dimension represents the time-domain signal.
DOI: 10.6084/m9.figshare.7902299.v1
title: Data Availability for PLOS ONE: "Mitigating the effects of granular scattering using cepstrum analysis in terahertz time-domain spectral imaging"

description: <b>"ref1.txt"</b>, <b>"ref2.txt"</b>, and <b>"ref3.txt"</b> are the air reference THz signals. The data includes the time axis and THz-TDS signal.<br>The raw sample data is provided as follows:<br><b>"osman_imgData_TDS_signal.mat" (variable named "imgData")</b> is the THz-TDS signal and<b> "osman_imgTime_time_axis.mat" (variable named "imgTime")</b> is the corresponding time axis. The first dimension represents the pixel in the x-axis, the second dimension represents the pixels in the y-axis, the third dimension represents the scattering angle (in this order: theta_{0}, theta_{-5}, theta_{-4}, theta_{-3}, theta_{-2}, theta_{-1}, theta_{1}, theta_{2}, theta_{3}, theta_{4}, theta_{5}), and the fourth dimension represents the time-domain signal.
DOI: 10.6084/m9.figshare.7902068
title: newmidfx-中学生有效数据-1.csv

description: Poor life quality and suicide behavior among Chinese adolescent students with internet addiction
DOI: 10.6084/m9.figshare.7902062
title: 032719 Cell line authentication - human.pdf

description: Human cell line authentication data03/27/2019
DOI: 10.6084/m9.figshare.7902062.v1
title: 032719 Cell line authentication - human.pdf

description: Human cell line authentication data03/27/2019
DOI: 10.6084/m9.figshare.7901978
title: Cell line authentication - human.pdf

description: Cell line authentication data
DOI: 10.6084/m9.figshare.7902005
title: Supplementary Material for: Loss of the Golgi Matrix Protein 130 Cause Aberrant IgA1 Glycosylation in IgA Nephropathy

description: <b><i>Background:</i></b> Aberrant O-glycosylation IgA1 production is a major factor in the pathogenesis of IgA nephropathy, but the underlying mechanism is still unclear. IgA1 glycosylation modification is in Golgi, and downregulation of the Golgi peripheral membrane protein Golgi matrix protein 130 (GM130) could lead to glycosylation deficiency. In this study, we aimed to explore the role of GM130 in glycosylate deficiency IgA1 (Gd-IgA1) production. <b><i>Methods:</i></b> We enrolled 27 IgA nephropathy patients, 12 patients with chronic tonsillitis, 15 non-IgAN chronic kidney disease patients, and 15 healthy volunteers as healthy control. We explored GM130 expression in Tonsillar tissue by immunofluorescence staining and Western blotting and expression in peripheral blood mononuclear cells (PBMCs) by flow cytometry. The concentration of IgA1 and level of O-glycosylation were determined by ELISA and Vicia Villosa lectin-binding assay. Real-time PCR and Western blot were used to analyze the levels of β1,3-Gal transferase (C1GALT1) and ST6GalNAC2, respectively. To explore the contribution of GM130 in IgA1 O-glycosylation modification, cells were subjected to experiments for evaluation of GM130 silencing by GM130-siRNA transfection. <b><i>Results:</i></b> GM130 expression was significantly decreased in tonsil tissues and PBMC of IgAN patients; the expression of C1GALT1 decreased and Gd-IgA1 level increased significantly in patients with IgAN patients. The expression of GM130 was negatively related to Gd-IgA1 production. By siRNA transfection, our results clearly indicated that the downregulation of GM130 can increase IgA1 O-glycosylation deficiency, which is thought to reduce C1GALT1 expression but not affect the expression of ST6GalNAC2. <b><i>Conclusion:</i></b> We identified and demonstrated that GM130 plays an important role in IgA1 O-glycans deficiency in IgAN patients, by negatively regulating C1GALT1 expression. We believe that this finding will provide theoretical foundations for a new mechanism of Gd-IgA1 production in IgAN patients.
DOI: 10.6084/m9.figshare.7901978.v1
title: Cell line authentication - human.pdf

description: Cell line authentication data
DOI: 10.6084/m9.figshare.7902047
title: Supplementary Material for: Comparison of 24-hour and Office Pulse Wave Velocity for Prediction of Mortality in Hemodialysis Patients

description: <b><i>Background:</i></b> Mortality in hemodialysis patients still remains unacceptably high. Enhanced arterial stiffness is a known cardiovascular risk factor, and pulse wave velocity (PWV) has proven to be a valid parameter to quantify risk. Recent studies showed controversial results regarding the prognostic significance of PWV for mortality in hemodialysis patients, which may be due to methodological issues, such as assessment of PWV in the office setting (Office-PWV). <b><i>Method:</i></b> This study cohort contains patients from the “Risk stratification in end-stage renal disease – the ISAR study,” a multicenter prospective longitudinal observatory cohort study. We examined and compared the predictive value of ambulatory 24-hour PWV (24 h-PWV) and Office-PWV on mortality in a total of 344 hemodialysis patients. The endpoints of the study were all-cause and cardiovascular mortality. Survival analysis included Kaplan-Meier estimates and Cox regression analysis. <b><i>Results:</i></b> During a follow-up of 36 months, a total of 89 patients died, 35 patients due to cardiovascular cause. Kaplan-Meier estimates for tertiles of 24 h-PWV and Office-PWV were similarly associated with mortality. In univariate Cox regression analysis, 24 h-PWV and Office-PWV were equivalent predictors for all-cause and cardiovascular mortality. After adjustment for common risk factors, only 24 h-PWV remained solely predictive for all-cause mortality (hazard ratio 2.51 [95% CI 1.31–4.81]; <i>p</i> = 0.004). <b><i>Conclusions:</i></b> Comparing both measurements, 24 h-PWV is an independent predictor for all-cause-mortality in hemodialysis patients beyond Office-PWV.