cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3984084
title: Frequency tables for the coding-invariant quality assessment of factorial designs

description: Quality assessment of factorial designs, particularly mixed-level factorial designs, is a nontrivial task. Existing methods for orthogonal arrays include generalized minimum aberration, a modification thereof that was proposed by Wu and Zhang for mixed two- and four-level arrays, and minimum projection aberration. For supersaturated designs, <i>E</i>(<i>s</i><sup>2</sup>) or χ<sup>2</sup>-based criteria are widely used. Based on recent insights by Grömping and Xu regarding the interpretation of the projected <i>a</i><i><sub>R</sub></i> values used in minimum projection aberration, this article proposes three new types of frequency tables for assessing the quality of level-balanced factorial designs. These are coding invariant, which is particularly important for designs with qualitative factors. The proposed tables are used in the same way as those used in minimum projection aberration and behave more favorably when used for mixed-level arrays. Furthermore, they are much more manageable than the above-mentioned approach by Wu and Zhang. The article justifies the proposed tables based on their statistical information content, makes recommendations for their use, and compares them with each other and with existing criteria. As a byproduct, it is shown that generalized minimum aberration refines the established expected χ<sup>2</sup> criterion for level-balanced supersaturated designs.
DOI: 10.7910/dvn/v1rjpf/y736dn
title: snk20160830_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3984084.v2
title: Frequency tables for the coding-invariant quality assessment of factorial designs

description: Quality assessment of factorial designs, particularly mixed-level factorial designs, is a nontrivial task. Existing methods for orthogonal arrays include generalized minimum aberration, a modification thereof that was proposed by Wu and Zhang for mixed two- and four-level arrays, and minimum projection aberration. For supersaturated designs, <i>E</i>(<i>s</i><sup>2</sup>) or χ<sup>2</sup>-based criteria are widely used. Based on recent insights by Grömping and Xu regarding the interpretation of the projected <i>a</i><i><sub>R</sub></i> values used in minimum projection aberration, this article proposes three new types of frequency tables for assessing the quality of level-balanced factorial designs. These are coding invariant, which is particularly important for designs with qualitative factors. The proposed tables are used in the same way as those used in minimum projection aberration and behave more favorably when used for mixed-level arrays. Furthermore, they are much more manageable than the above-mentioned approach by Wu and Zhang. The article justifies the proposed tables based on their statistical information content, makes recommendations for their use, and compares them with each other and with existing criteria. As a byproduct, it is shown that generalized minimum aberration refines the established expected χ<sup>2</sup> criterion for level-balanced supersaturated designs.
DOI: 10.6084/m9.figshare.3984081
title: <i>Sabinosuchus coahuilensis</i>, a new dyrosaurid crocodyliform from the Escondido Formation (Maastrichtian) of Coahuila, Mexico

description: <i>Sabinosuchus coahuilensis</i>, n. gen. et sp., is a marine crocodyliform from the Upper Cretaceous Sauz Creek Member or lower part of the Cuevas Creek Member of the Escondido Formation (Maastrichtian) near Sabinas in Coahuila, Mexico. The type specimen exhibits two synapomorphies of family Dyrosauridae: dentary alveolus 7 is reduced in size compared with the eighth, and the mandibular symphysis is nearly as wide as it is high for most of its length. <i>Sabinosuchus coahuilensis</i> is distinguished from all other known members of Dyrosauridae on the basis of three autapomorphic traits: the posterior section of the mandible is distinctly broad and flat, the mandibular rami are considerably longer than the symphysis, and the posterior mandibular alveoli are uniquely arranged. <i>Sabinosuchus coahuilensis</i> joins <i>Hyposaurus rogersii</i> as the second known North American dyrosaurid. Although the two were contemporaneous, they differed notably in rostrum length and shape; <i>S. coahuilensis</i> has a relatively shorter rostrum with a much wider and flatter posterior mandibular symphysis. Phylogenetic analyses and biostratigraphy suggest that <i>S. coahuilensis</i> occupies a basal position in Dyrosauridae. http://zoobank.org/urn:lsid:zoobank.org:pub:0B48E2C2-B1AA-4539-8F67-0F217AE1A914 SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Shiller, T. A., II, H. G. Porras-Muzquiz, and T. M. Lehman. 2016. <i>Sabinosuchus coahuilensis</i>, a new dyrosaurid crocodyliform from the Escondido Formation (Maastrichtian) of Coahuila, Mexico. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2016.1222586.
DOI: 10.6084/m9.figshare.3984084.v1
title: Frequency tables for the coding invariant quality assessment of factorial designs

description: Quality assessment of factorial designs, particularly mixed level factorial designs, is a non-trivial task. Existing methods for orthogonal arrays include generalized minimum aberration, a modification thereof that was proposed by Wu and Zhang for mixed two- and four-level arrays, and minimum projection aberration. For supersaturated designs, E(<i>s</i><sup>2</sup>) or χ<sup>2</sup> based criteria are widely used. Based on recent insights by Grömping and Xu regarding the interpretation of the projected a<i><sub>R</sub></i> values used in minimum projection aberration, this paper proposes three new types of frequency tables for assessing the quality of level-balanced factorial designs. These are coding invariant, which is particularly important for designs with qualitative factors. The proposed tables are used in the same way as those used in minimum projection aberration and behave more favorably when used for mixed level arrays. Furthermore, they are much more manageable than the above-mentioned approach by Wu and Zhang. The paper justifies the proposed tables based on their statistical information content, makes recommendations for their use and compares them with each other and with existing criteria. As a byproduct, it is shown that generalized minimum aberration refines the established expected χ<sup>2</sup> criterion for level-balanced supersaturated designs.
DOI: 10.7910/dvn/v1rjpf/9xzt1q
title: snk20161120_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3984081.v1
title: <i>Sabinosuchus coahuilensis</i>, a new dyrosaurid crocodyliform from the Escondido Formation (Maastrichtian) of Coahuila, Mexico

description: <i>Sabinosuchus coahuilensis</i>, n. gen. et sp., is a marine crocodyliform from the Upper Cretaceous Sauz Creek Member or lower part of the Cuevas Creek Member of the Escondido Formation (Maastrichtian) near Sabinas in Coahuila, Mexico. The type specimen exhibits two synapomorphies of family Dyrosauridae: dentary alveolus 7 is reduced in size compared with the eighth, and the mandibular symphysis is nearly as wide as it is high for most of its length. <i>Sabinosuchus coahuilensis</i> is distinguished from all other known members of Dyrosauridae on the basis of three autapomorphic traits: the posterior section of the mandible is distinctly broad and flat, the mandibular rami are considerably longer than the symphysis, and the posterior mandibular alveoli are uniquely arranged. <i>Sabinosuchus coahuilensis</i> joins <i>Hyposaurus rogersii</i> as the second known North American dyrosaurid. Although the two were contemporaneous, they differed notably in rostrum length and shape; <i>S. coahuilensis</i> has a relatively shorter rostrum with a much wider and flatter posterior mandibular symphysis. Phylogenetic analyses and biostratigraphy suggest that <i>S. coahuilensis</i> occupies a basal position in Dyrosauridae. http://zoobank.org/urn:lsid:zoobank.org:pub:0B48E2C2-B1AA-4539-8F67-0F217AE1A914 SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Shiller, T. A., II, H. G. Porras-Muzquiz, and T. M. Lehman. 2016. <i>Sabinosuchus coahuilensis</i>, a new dyrosaurid crocodyliform from the Escondido Formation (Maastrichtian) of Coahuila, Mexico. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2016.1222586.
DOI: 10.7910/dvn/v1rjpf/f3jtkd
title: snk20161122_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3984060
title: Figure1:C3-10d-MDA-MB-231GFPcells.zip

description: The collective migration of MDA-MB-231 cells in a DIGME device.
DOI: 10.6084/m9.figshare.3984060.v1
title: Figure1:C3-10d-MDA-MB-231GFPcells.zip

description: The collective migration of MDA-MB-231 cells in a DIGME device.
DOI: 10.7910/dvn/v1rjpf/bqe9wy
title: snk20150415_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/ckmuq3
title: snk20150212_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/iwll7h
title: snk20150324_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3983985
title: 20 Maize Hybrids Genotyped

description: These data has 20 maize hybrids genotyped for 768 Small Nuclear Polymorphisms markers.Hybrids represent the Brazilian commercial germoplasm.Hybrids in line and markers in columns.None Quality control applied to the markers (MAF and Call Rate).<br>The Genotypes are as nitrogenous bases (ex. G/G) and missing data as -/-.
DOI: 10.7910/dvn/v1rjpf/3x7sh9
title: snk20151013_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/noapz4
title: snk20151005_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/1yblj1
title: snk20151109_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/li85cf
title: snk20150521_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/qfz7xi
title: snk20150909_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3983889
title: A spiking neuron model of adaptive arm control - Supplementary material - data package 5

description: Analysis data required for generating correlations-M1 using the scripts provided at https://github.com/studywolf/REACH-paper/tree/master/analysis
DOI: 10.7910/dvn/v1rjpf/zs39qx
title: snk20150128_03.txt.gz

description: :unav
DOI: 10.5281/zenodo.3978440
title: Training data for the component contribution method

description: Data files containing measured Gibbs free energies of reaction and formation (or electrostatic potential). This data is used by the component-contribution method to train the regression model that is used to estimate Gibbs free energies of many other biochemical reactions.
DOI: 10.7910/dvn/v1rjpf/quycdd
title: snk20160721_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3983889.v1
title: data5

description: Analysis data for correlations-M1<br>
DOI: 10.6084/m9.figshare.3983883
title: A spiking neuron model of adaptive arm control - Supplementary material - data package 2

description: Analysis data required for generating correlations-CB/movement_parameters and neural_activity 0-33 using the scripts provided at https://github.com/studywolf/REACH-paper/tree/master/analysis
DOI: 10.6084/m9.figshare.3983886
title: A spiking neuron model of adaptive arm control - Supplementary material - data package 3

description: Analysis data required for generating correlations-CB/neural_activity 34-66 using the scripts provided at https://github.com/studywolf/REACH-paper/tree/master/analysis
DOI: 10.7910/dvn/v1rjpf/6nlmin
title: snk20161223_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3983883.v2
title: A spiking neuron model of adaptive arm control - Supplementary material - data package 2

description: Analysis data required for generating correlations-CB/movement_parameters and neural_activity 0-33 using the scripts provided at https://github.com/studywolf/REACH-paper/tree/master/analysis
DOI: 10.6084/m9.figshare.3983886.v2
title: A spiking neuron model of adaptive arm control - Supplementary material - data package 3

description: Analysis data required for generating correlations-CB/neural_activity 34-66 using the scripts provided at https://github.com/studywolf/REACH-paper/tree/master/analysis
DOI: 10.7910/dvn/v1rjpf/mwflum
title: snk20160731_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3983883.v1
title: data2

description: Analysis data for correlations-CB/movement_parameters and neural_activity 0-33
DOI: 10.6084/m9.figshare.3983886.v1
title: data3

description: Analysis data for correlations-CB/neural_activity 34-66
DOI: 10.6084/m9.figshare.3983880
title: A spiking neuron model of adaptive arm control - Supplementary material - data package 1

description: Analysis data required for generating 8_reaches, attractor, and velocity profile using the scripts provided at https://github.com/studywolf/REACH-paper/tree/master/analysis
DOI: 10.7910/dvn/v1rjpf/3cggag
title: snk20160911_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3983856
title: A spiking neuron model of adaptive arm control - Supplementary material - data package 4

description: Analysis data required for generating correlations-CB/neural_activity 66-100 using the scripts provided at https://github.com/studywolf/REACH-paper/tree/master/analysis
DOI: 10.7910/dvn/v1rjpf/qhgnwu
title: snk20150407_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3983880.v2
title: A spiking neuron model of adaptive arm control - Supplementary material - data package 1

description: Analysis data required for generating 8_reaches, attractor, and velocity profile using the scripts provided at https://github.com/studywolf/REACH-paper/tree/master/analysis
DOI: 10.7910/dvn/v1rjpf/n0qlil
title: snk20150906_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3983880.v1
title: data1

description: Analysis data for 8_reaches, attractor, and velocity profile
DOI: 10.6084/m9.figshare.3983526
title: Villin Headpiece Simulations

description: 3 separate simulations each of 6µs concatenated together are contained herein. Each trajectory was run with ACEMD using a CHARMM 27 force field. The proteins (2RJY) were first solvated to 0.15 mol/L of NaCL and set in a water box modeled as a TIP3P water model. Proteins were then equilibrated (conjugate gradient minimization) and then heated from the crystal structure to unfold. Folding simulations were run after a subsequent equilibration. While the simulations do not find the native folded state, they sample many partially folded intermediates and offer insight into the folding pathway of villin headpiece. Simulations included here have had the water and ions removed for space considerations and they have been aligned to remove translation and rotation resulting from diffusion.
DOI: 10.6084/m9.figshare.3983526.v1
title: Villin Headpiece Simulations

description: 3 separate simulations each of 6µs concatenated together are contained herein. Each trajectory was run with ACEMD using a CHARMM 27 force field. The proteins (2RJY) were first solvated to 0.15 mol/L of NaCL and set in a water box modeled as a TIP3P water model. Proteins were then equilibrated (conjugate gradient minimization) and then heated from the crystal structure to unfold. Folding simulations were run after a subsequent equilibration. While the simulations do not find the native folded state, they sample many partially folded intermediates and offer insight into the folding pathway of villin headpiece. Simulations included here have had the water and ions removed for space considerations and they have been aligned to remove translation and rotation resulting from diffusion.
DOI: 10.6084/m9.figshare.3983856.v1
title: data4

description: Analysis data for correlations-CB/neural_activity 66-100<br>
DOI: 10.7910/dvn/v1rjpf/7mxhke
title: snk20150221_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/jif4at
title: snk20151014_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/qdl1zb
title: snk20160623_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3980607
title: Influence of Substrate Modulus on Gecko Adhesion

description: Sheet 1: Whole Animal Gecko TrialsAll trials were done in an environmental chamber, set to 25 C and 35 %$RH. The specimens had thirty minutes to acclimate to the conditions, then were tested vertically on two sets of substrates (cellulose acetate and PDMS) using a force-sensing apparatus, similar to the one used by Niewiarowski et al., 2008. This force-sensing apparatus was measured the force that the specimens were capable of withstanding (for safety of the gecko, a maximum of 20 N was set). <br>Before starting an individual experiment, the gecko had a small strip of medical tape carefully placed around the mouth, avoiding the nostrils, and was fitted with two harnesses around their pelvis, which were then attached to a force sensor positioned vertically on a motorized track. The gecko was placed on the substrate and encouraged to take a few steps, ensuring natural adhesion to the substrate. After each trial the substrate was cleaned.<br>Within each substrate set, gecko trials were performed randomly on the different modulus substrates, with a total of three trials per substrate. Geckos were tested a maximum of three times before having at least a 24 hour rest period. The trials with the highest force for each gecko on each substrates are presented here.<br>Sheet 2: Isolated Lamella AdhesionSkin sheds from 7 naturally molting Tokay geckos were collected and stored in a -20 C freezer. Single lamella were isolated from gecko sheds and adhered to small glass plates with cyanoacrylate glue such that the skin was anchored to the glass, but the setal strip was free to flex. Shear adhesion trials were done with ethanol/water cleaned glass and solvent extracted 1000 micron PDMS substrates.<br>The substrate was brought in contact with the lamella in the normal force direction by motor and loaded to a force of around 5 mN. The lamella was then loaded in the shear direction with a velocity of 5 microns/s such that the substrate would move towards the direction of the tip of the toe, with respect to the lamella. The trial was ended manually when the shear force dramatically dropped, reached a plateau for at least a minute, or the lamella reached the end of the substrate, and the maximum force was taken to be the shear adhesion force. <br>
DOI: 10.7910/dvn/v1rjpf/i6azay
title: snk20151213_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3980607.v2
title: Influence of Substrate Modulus on Gecko Adhesion

description: Sheet 1: Whole Animal Gecko TrialsAll trials were done in an environmental chamber, set to 25 C and 35 %$RH. The specimens had thirty minutes to acclimate to the conditions, then were tested vertically on two sets of substrates (cellulose acetate and PDMS) using a force-sensing apparatus, similar to the one used by Niewiarowski et al., 2008. This force-sensing apparatus was measured the force that the specimens were capable of withstanding (for safety of the gecko, a maximum of 20 N was set). <br>Before starting an individual experiment, the gecko had a small strip of medical tape carefully placed around the mouth, avoiding the nostrils, and was fitted with two harnesses around their pelvis, which were then attached to a force sensor positioned vertically on a motorized track. The gecko was placed on the substrate and encouraged to take a few steps, ensuring natural adhesion to the substrate. After each trial the substrate was cleaned.<br>Within each substrate set, gecko trials were performed randomly on the different modulus substrates, with a total of three trials per substrate. Geckos were tested a maximum of three times before having at least a 24 hour rest period. The trials with the highest force for each gecko on each substrates are presented here.<br>Sheet 2: Isolated Lamella AdhesionSkin sheds from 7 naturally molting Tokay geckos were collected and stored in a -20 C freezer. Single lamella were isolated from gecko sheds and adhered to small glass plates with cyanoacrylate glue such that the skin was anchored to the glass, but the setal strip was free to flex. Shear adhesion trials were done with ethanol/water cleaned glass and solvent extracted 1000 micron PDMS substrates.<br>The substrate was brought in contact with the lamella in the normal force direction by motor and loaded to a force of around 5 mN. The lamella was then loaded in the shear direction with a velocity of 5 microns/s such that the substrate would move towards the direction of the tip of the toe, with respect to the lamella. The trial was ended manually when the shear force dramatically dropped, reached a plateau for at least a minute, or the lamella reached the end of the substrate, and the maximum force was taken to be the shear adhesion force. <br>
DOI: 10.7910/dvn/v1rjpf/o6n87j
title: snk20150713_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3980607.v1
title: Gecko Adhesion on Soft Substrates Data.xlsx

description: Sheet 1: Whole Animal Gecko TrialsAll trials were done in an environmental chamber, set to 25 C and 35 %$RH. The specimens had thirty minutes to acclimate to the conditions, then were tested vertically on two sets of substrates (cellulose acetate and PDMS) using a force-sensing apparatus, similar to the one used by Niewiarowski et al., 2008. This force-sensing apparatus was measured the force that the specimens were capable of withstanding (for safety of the gecko, a maximum of 20 N was set). <br>Before starting an individual experiment, the gecko had a small strip of medical tape carefully placed around the mouth, avoiding the nostrils, and was fitted with two harnesses around their pelvis, which were then attached to a force sensor positioned vertically on a motorized track. The gecko was placed on the substrate and encouraged to take a few steps, ensuring natural adhesion to the substrate. After each trial the substrate was cleaned.<br>Within each substrate set, gecko trials were performed randomly on the different modulus substrates, with a total of three trials per substrate. Geckos were tested a maximum of three times before having at least a 24 hour rest period. The trials with the highest force for each gecko on each substrates are presented here.<br>Sheet 2: Isolated Lamella AdhesionSkin sheds from 7 naturally molting Tokay geckos were collected and stored in a -20 C freezer. Single lamella were isolated from gecko sheds and adhered to small glass plates with cyanoacrylate glue such that the skin was anchored to the glass, but the setal strip was free to flex. Shear adhesion trials were done with ethanol/water cleaned glass and solvent extracted 1000 micron PDMS substrates.<br>The substrate was brought in contact with the lamella in the normal force direction by motor and loaded to a force of around 5 mN. The lamella was then loaded in the shear direction with a velocity of 5 microns/s such that the substrate would move towards the direction of the tip of the toe, with respect to the lamella. The trial was ended manually when the shear force dramatically dropped, reached a plateau for at least a minute, or the lamella reached the end of the substrate, and the maximum force was taken to be the shear adhesion force. <br>
DOI: 10.7910/dvn/v1rjpf/b6i9yw
title: snk20150226_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/5qla7h
title: snk20160201_03.txt.gz

description: :unav