cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.g6r7943/9
title: Fig_S1.tre

description: Fig. S1 tree.  Best tree from the RAxML analysis of the combined trnK-matK and rbcL core Caryophyllales dataset showing branch lengths, in nexus format. Branch labels show bootstrap values from 1000 bootstrap rep¬licates.
DOI: 10.5061/dryad.h0qg353/1
title: field survey data

description: contains the bird detection data from point counts and sound recordings along with species, number of individuals and distances
DOI: 10.5061/dryad.h0qg353/2
title: distance estimation data

description: contains estimated and measured distances from recorder to bird for several species in different habitats
DOI: 10.5061/dryad.ms38c8k/2
title: Dryad archive data_2_individuals data
DOI: 10.5061/dryad.ms38c8k/3
title: Dryad archive data_3_sample units data
DOI: 10.5061/dryad.t66gq81/1
title: Empirical data for analysis of humans, plants, and lizards.

description: The folder contains multilocus sequence data for BPP species delimitation analyses of Homo sapiens, Scincella lateralis, and Sarracenia alata. Each folder includes the data file (formatted for BPP), imap files for assigning samples to species, and control files for executing analyses as described in the publication. Four replicate control files for each analysis are included (each with a different starting seed). The R script is used to summarize the results of the BPP analysis by importing the MCMC files, calculating the posterior distribution of GDI values, and producing graphs.
DOI: 10.5061/dryad.t66gq81/2
title: Simulation files for hierarchical species delimitation with MSC/GDI

description: Files for replicating the species delimitation simulation of species ABCD and X, where ABCD is one species with a large geographic distribution, and X is a new species with no gene flow with ABCD. There is gene flow with M = Nm = 2 between the adjacent populations of ABCD (both ancestral and extant populations). The folder includes an MCcoal simulation control file for simulating 100 loci (500 bp each) for populations A, B, C, D, and X. Also included are BPP analysis files for MSC analysis (data files, Imap files, and control files). Four replicate control files are provided for each analysis (with different starting seeds).
DOI: 10.17632/2dcycpz4k9.3
title: Data for: SNP-haplotypes: an accurate approach for parentage and relatedness inference in gilthead sea bream (Sparus aurata)

description: SNP positions included in our gilthead sea bream final panel. SNP positions are represented on the gene sequences by the letter N.
DOI: 10.17632/4w7w4hfdmk.1
title: Data for: Architectured Duplex Stainless Steels micro-composite: elaboration and microstructure characterization

description: Data for tensile tests and X-ray diffractograms from paper "Architectured Duplex Stainless Steels micro-composite: elaboration and microstructure characterization" by Hasan Naser et al.
DOI: 10.5061/dryad.02f33n6/2
title: Appendix S2

description: Image stack of the CT scan data with a text file that contains scan details and settings.
DOI: 10.5061/dryad.02f33n6/3
title: Appendix S3

description: NEXUS file of the data matrix used in a Phylogenetic analysis.
DOI: 10.5061/dryad.02f33n6/4
title: Appendix S4

description: Character list used in a Phylogenetic analysis.
DOI: 10.5061/dryad.2pb356h/4
title: Appendix S2. Character_optimisation

description: Appendix S2 includes a figure of the MPT used for character optimization, and the character optimizations for each node of the tree.
DOI: 10.5061/dryad.2pb356h/5
title: Appendix S3. Constraint_trees_and_reduced_analysis

description: Appendix S3 includes supplemenatry figures showing the consensus topology of our analysis in which 'marine' characters have been deleted from the dataset, consensus topologies for the 'least specialised taxa analyses', and consensus topologies for all Templeton's test contraint analyses.
DOI: 10.5061/dryad.2pb356h/6
title: Appendix S4. Evers & Benson 2018_matrix

description: Appendix S4 is our character-taxon matrix in .txt format, readable in TNT and including TNT code for constraining the tree topology of extant taxa.
DOI: 10.5061/dryad.37628q6/1
title: Valproic acid is protective in cellular and worm models of oculopharyngeal muscular dystrophy (Supplementary Figures)

description: Supplementary Figures: figure e-1, figure e-2, figure e-3, figure e-4, figure e-5, figure e-6, figure e-7, figure e-8, figure e-9, figure e-10, figure e-11, figure e-12, figure e-13.
DOI: 10.5061/dryad.3mn5rk4/1
title: Male competition, female choice, predation, and lighting environments in bluefin killifish

description: This excel sheet contains 4 data sets.  'maledominance' contains the data from the male/male competition experiment. 'female_choice' contains the data from the female choice experiment. 'Preliminary_Bass_Predation_Exp' contains the data from the bass predation experiment.  'Clear_Tea_Light' contains the absolute and relative irradiance data from clear and tea-stained lighting treatments. Each data set has an explanatory header.
DOI: 10.5061/dryad.4m9j1/1
title: Alleles for each individual at each locus

description: Alleles for each locus for each individual are presented in this file. These alleles were used as the input for the rest of the analyses.
DOI: 10.5061/dryad.4m9j1/2
title: STRUCTURE input file

description: This is the file used as input for the STRUCTURE analysis; the rest of the details for this analysis are presented in the methods section.
DOI: 10.5061/dryad.4m9j1/3
title: TESS input file

description: This was the input file used for the TESS analysis; all other parameters used in this study are included in the methods.
DOI: 10.5061/dryad.4m9j1/4
title: Genepop input file

description: This is the file used for the Genepop analysis. Extra zeros at the end of the individual were used to keep the columns straight. Results are presented in the manuscript.
DOI: 10.5061/dryad.4m9j1/5
title: STRUCTURE_CLUMPP2

description: These are the results from the STRUCTURE analysis after combining the runs using CLUMPP. The cluster membership percentage for each individual is presented.
DOI: 10.5061/dryad.4m9j1/6
title: TESS_CLUMPP_8

description: These are the results from the TESS analysis after combining the runs using CLUMPP. The cluster membership percentage for each individual is presented.
DOI: 10.5061/dryad.4m9j1/7
title: Spagedi_SUSSEN_AIRSTRIP

description: Here is the input for the Spagedi analysis for the Sussen and Airstrip populations. The coordinates in this file were used in the GenClone analysis.
DOI: 10.5061/dryad.4nr40/1
title: SURVIVALDATA

description: Survival data of inbred and outbred male and female canaries across three years.
DOI: 10.5061/dryad.57027hc/1
title: Pande et al_2018_microsatellite

description: Genotype data generated from cross-species microsatellite markers for Snow Petrel and Wilson's Storm Petrel.
DOI: 10.5061/dryad.5nj81nf/1
title: Koski et al. 2018_Data_ProcRoySoc

description: Data are in separate tabs. Please refer to the "Metadata" tab for header descriptions. 1) Data on pollen limitation, pollinator visitation rates, and pollen depletion metrics across 23 populations of Campanula americana. 2) The relationship between pollen grains deposited on stigmas and seed set. 3) Data used to calculate pollen deposition efficiency for pollinators, 4) Data used to calculate seed set efficiency for pollinators, 5) Data used to calculate pollen removal efficiency for pollinators.
DOI: 10.5061/dryad.5sq0q18/1
title: Tobacco use prevalence for DYRAD

description: The data file provides the prevalence of tobacco use and cessation training indicators by countries surveyed in  GHPSS and six WHO regions as well as aggregate estimates for WHO regions reported by gender for four health professions disciplines namely medicine, dentistry, nursing and pharmacy.
DOI: 10.5061/dryad.641hb/24
title: Figure 5D
DOI: 10.5061/dryad.641hb/25
title: Figure 5C
DOI: 10.5061/dryad.641hb/26
title: Figure5A
DOI: 10.5061/dryad.641hb/27
title: FIGURE3A
DOI: 10.5061/dryad.641hb/28
title: FIGURE4C
DOI: 10.5061/dryad.65p331m/1
title: Supplementary_text
DOI: 10.5061/dryad.65p331m/2
title: Table S1
DOI: 10.5061/dryad.9sj250q/1
title: Lambert et al 2018 Elife Raw data Figure 2

description: Measures of fluorescence signals from immuno-labeled spinal slices
DOI: 10.5061/dryad.9sj250q/2
title: Lambert et al 2018 Elife Raw data Figure 4 sup1

description: Analysis of calcium signals during fictive locomotion in non-cholinergic hindlimb motoneurons
DOI: 10.5061/dryad.b6c54q3/1
title: Original data and description

description: Data tool and description, including xps fitting process.
DOI: 10.5061/dryad.b6c54q3/2
title: error bar origin data
DOI: 10.5061/dryad.bb3h52t/5
title: Reverse raw data
DOI: 10.5061/dryad.cd4h7f1/1
title: Waser, CaraDonna, Price data

description: These are raw data on nectar properties of flowers and on hummingbird feeding rates at the flowers from field observations from 1970s though 2010s, to accompany Waser, CaraDonna, and Price MS 58156R1 In Press in The American Naturalist ("Atypical flowers can be as profitable as typical hummingbird flowers").  The data are hand-written on data paper as the original data were taken.  Note that the Greek letter lambda refers to the capacity of the Drummond microcap used to extract nectar, e.g., 5 lambda = 5 ul capacity.  Each microcap capacity has a fixed length (1, 2, and 5 = 32mm long, 10 = 41mm); this is essential to know in converting mm of nectar to microliters of nectar.  Sites referred to on the data sheets are explained in Table 1 of the manuscript.
DOI: 10.5061/dryad.d52df21/2
title: Fall 2014 Mount Polley Metadata

description: The attached file includes recorded field metrics and laboratory analyses for soil and water samples collected following the Mount Polley tailings impoundment failure in August 2014. Worksheet descriptions are provided in the attached readme file and sample naming conventions are embedded within included worksheets.
DOI: 10.5061/dryad.d7q6564/1
title: Dung fly data for Dryad

description: Reproductive trait data for dung flies
DOI: 10.5061/dryad.d9065/2
title: Uist 2015 Life History Arlequin Input

description: Input file for Arlequin analysis based on 2013 sampled fish.
DOI: 10.5061/dryad.d9065/3
title: Uist 2015 Life History FastSTRUCTURE

description: Input for FastSTRUCTURE in PLINK BED format.
DOI: 10.5061/dryad.d9065/4
title: Uist 2015 Life History Bayenv SNPfile

description: Main input for Bayenv2 analysis.
DOI: 10.5061/dryad.d9065/5
title: Uist 2015 Life History Bayenv Loci

description: Loci used in Bayenv analysis. Each pair of rows in the Bayenv SNPfile corresponds to 1 locus from this file.
DOI: 10.5061/dryad.d9065/6
title: Uist 2015 Life History Bayenv Locus Info

description: Genome location information loci used in Bayenv analysis
DOI: 10.5061/dryad.d9065/7
title: Uist 2015 Life History qPCR PCA PLINK

description: Input PLINK PED and MAP files for Adegenet PCA analysis
DOI: 10.5061/dryad.d9065/8
title: Uist 2015 Life History Sampling and Expression Data
DOI: 10.5061/dryad.df6qd5n/1
title: Appendix

description: Table.1a. Patient’s Demographic and Clinical Characteristics.                          Table.1b. Screening Criteria. Fig.1. CONSORT Flow Diagram. Fig.2. ROIs Constructing The Chronic Pain Matrix Used For Graph Theory Analysis. Fig.3. Adjacency Matrix Threshold
DOI: 10.5061/dryad.g8d77ft/1
title: FINAL_VICUNA_and_GUANACO_msa

description: Excel file with the vicuña and guanaco microsatellite MSA input files.
DOI: 10.5061/dryad.jd8f99n/1
title: CWM_traits for aquatic plants

description: Data was collected in a field survey in August 2014 comprising 30 sites in the Gulf of Finland, Northern Baltic Sea. Sampled sites occurred along a wave exposure gradient and were divided into outer, middle and inner archipelago areas (see article for details).  At each site, five replicate plots (1m2 each) were sampled. Trait measurements were weighted by the shoot densities of each species to retrieve the community-weighted mean trait value and standardized to have a mean of 0 and variance of 1. See article for more information on the trait measurements.  The data was used in constructing Structural Equation Models. Abbreviated headlines are as follow: “CWM_SLA” = community-weighted mean specific leaf area, “CWM_Root” = community-weighted mean root length, “CWM_Hmax” = community-weighted mean maximum vegetative height, “CWM_RS = community-weighted mean root to shoot ratio, CWM_LeafN = community-weighted mean leaf nitrogen concentration, “CWM_RootN” = community-weighted root nitrogen concentration, “CWM_Leafd15N” = the community-weighted mean delta 15N of youngest leaves, “CWM_Leafd13C” = the community-weighted mean delta 13C of youngest leaves, “CWM_Rootd15N” = the community-weighted mean delta 15N of youngest roots, “lnSilt” = the ln-transformed silt-fraction and “lnPrimprod” = the ln-transformed community primary production.
DOI: 10.5061/dryad.mq25897/1
title: Scripts for alignment, filtering and file conversion

description: Scripts for aligning reads, calling SNPs and converting files for downstream population genomic analyses. See README for more details
DOI: 10.5061/dryad.mq25897/2
title: Individual data

description: Individual data stored as a csv file - necessary for R scripts bundled here. Information on species, population, location and sex.
DOI: 10.5061/dryad.mq25897/3
title: Population structure scripts

description: R and shell scripts for analysing population structure. See README for more details.
DOI: 10.5061/dryad.mq25897/4
title: Genome scan scripts

description: R and shell scripts to perform genome scan analyses. See README for details on how to use scripts
DOI: 10.5061/dryad.mq25897/5
title: Genome scan data

description: Fst, dxy, fd and LRH statistics for genome sliding windows. See readme for more information on how to interpret individual files
DOI: 10.5061/dryad.mq25897/7
title: Outlier analysis data and scripts

description: Compressed archive contains R script for identifying clusters in outlier SNP regions. Outlier SNP data is also included
DOI: 10.5061/dryad.pq54gh5/1
title: ALAN and American Toad Data

description: This data is the data used in the article entitled "Artificial Light at Night decreases metamorphic duration and increases juvenile growth in a widespread amphibian." There is data on illumination levels of local wetlands in Cleveland, Ohio, as well as measurements of all parts of the experiment including toad time to metamorphosis, metamorphic duration, growth, survival and behavior in the larval and or post-metamorphic live stages. We also included measurements of algal growth and colonization of our mesocosms.
DOI: 10.5061/dryad.s5k85k5/1
title: Data from Gray et al Biology Letters

description: .xls file with data on (i) recording times of isolated males, and (ii) song characteristics of ACh induced calls.
DOI: 10.17632/4cs6y4m59z.3
title: Data for: SNP-haplotypes: an accurate approach for parentage and relatedness inference in gilthead sea bream (Sparus aurata)

description: SNP positions included in our gilthead sea bream final panel. SNP positions are represented on the gene sequences by the letter N.
DOI: 10.17632/bsjjf5y84y.1
title: Data for: An exploratory study of the standard reuse practice in a medium sized software development firm.

description: Supplementary materials for: An exploratory study of the standard reuse practice in a medium sized software development firm.
DOI: 10.5061/dryad.0bf6000/4
title: Supplementary Table 2

description: All drugs approved between 1995-2016 that did not receive therapeutic assessments
DOI: 10.5061/dryad.0bf6000/5
title: Supplementary Table 1

description: All drugs approved between 1995-2016 that received therapeutic assessments from Patented Medicine Prices Review Board and/or La revue Prescrire
DOI: 10.5061/dryad.16049f4/1
title: Clutch size, both experiments
DOI: 10.5061/dryad.2sk69c4/1
title: Crumetal2018_COMTSMM_PLOSONE

description: Data from Crum, Akinola, Turnwald, Kaptchuk & Hall (2018) PLOS ONE article: Catechol-O-Methyltransferase moderates effect of stress mindset on affect and cognition
DOI: 10.5061/dryad.35kg335/1
title: MRI dataset - README

description: MRI dataset for Large-scale network integration in the human brain tracks temporal fluctuations in memory encoding performance
DOI: 10.5061/dryad.35kg335/2
title: MRI dataset - Subject 01
DOI: 10.5061/dryad.35kg335/3
title: MRI dataset - Subject 02
DOI: 10.5061/dryad.35kg335/4
title: MRI dataset - Subject 03
DOI: 10.5061/dryad.35kg335/5
title: MRI dataset - Subject 04
DOI: 10.5061/dryad.35kg335/6
title: MRI dataset - Subject 05
DOI: 10.5061/dryad.402sb71/1
title: Genepop file of RAD SNP genotypes
DOI: 10.5061/dryad.402sb71/2
title: Pacific cod scripts

description: Scripts for Stacks, Perl and R. Details within the file
DOI: 10.5061/dryad.402sb71/3
title: Sequences for loci in Genepop file

description: This fasta file contains the consensus sequences for all of the loci in the genepop file. The locus name in this file corresponds to locus names in the genepop file, which also gives the position of the SNP.
DOI: 10.5061/dryad.402sb71/4
title: Individual barcodes of RAD sequences used in Stacks

description: This text file is a combination of the barcodes file and the "population map" file for the program stacks. Each line consists of (1) the individual barcode, (2) the sample ID, and (3) a numeric designation for the sampling site (putative population) to which the individuals belongs. Copying the first two columns into a separate text file will provide the barcodes.txt file used in stacks to demultiplex raw data. Copying the second two columns into a separate text file will provide the population map file used in the stacks function `populations` to call genotypes.
DOI: 10.5061/dryad.4m9j1/8
title: potaro_basecamp_Spagedi

description: This is the input file used in the Spagedi analysis for the Potaro and Basecamp populations. The coordinates in this analysis were also used in the GenClone analysis.
DOI: 10.5061/dryad.4nr40/2
title: FECUNDITYDATA

description: Fecundity data across three years of inbred and outbred male and female canaries in a 2x2 factorial design.
DOI: 10.5061/dryad.4nr40/3
title: FECUNDITYDATA-revised

description: Three years of fecundity data of inbred and outbred male and female canaries in a 2x2 factorial design.
DOI: 10.5061/dryad.550nd48/1
title: Kahn et al. data

description: Specimen information and raw data
DOI: 10.5061/dryad.550nd48/2
title: Kahn et al. R script

description: R script used for performing phylogenetically informed analyses of nuptial gift chemical composition
DOI: 10.5061/dryad.550nd48/3
title: Kahn et al. chemical data

description: Chemical composition data for analyses performed in R
DOI: 10.5061/dryad.550nd48/4
title: Kahn et al. phylogeny

description: Tree file for analyses performed in R
DOI: 10.5061/dryad.693b3f4/1
title: Methods_Test_Cameras_close_up_Dryad

description: Data for the close-up comaprison of the two cameras
DOI: 10.5061/dryad.693b3f4/2
title: Methods_Test_Cameras_Dryad

description: Data for the comparison of the six different camera traps
DOI: 10.5061/dryad.7vn81m1/1
title: Supplementary file 3

description: See the README file for a transcript of the video with an English translation.
DOI: 10.5061/dryad.9j7fd75/1
title: Severns and Breed Ecography SSR data

description: These are SSR fragment lengths from genotyping post-diapause larvae collected from three different sized patches (small, medium, large) in Euphydryas editha taylori patches in western Oregon USA.
DOI: 10.5061/dryad.9sj250q/10
title: Fig4sup1 imaging control
DOI: 10.5061/dryad.9sj250q/11
title: Fig4sup1 imaging d-tubo
DOI: 10.5061/dryad.9sj250q/3
title: Lambert et al 2018 Elife Raw data Figure 6

description: Measures of EMG responses evoked by motor nerve in isolated nerve-limb preparations - effects of cholinergic and glutamatergic antagonist perfusion. Measure of EMG response delay.
DOI: 10.5061/dryad.9sj250q/4
title: raw pix Fig1 B1
DOI: 10.5061/dryad.9sj250q/5
title: raw pix Fig1 B2
DOI: 10.5061/dryad.9sj250q/6
title: raw pix Fig1 C
DOI: 10.5061/dryad.9sj250q/7
title: raw pix Fig2 A
DOI: 10.5061/dryad.9sj250q/8
title: Fig2b-e raw images
DOI: 10.5061/dryad.9sj250q/9
title: raw pix Fig3 A
DOI: 10.5061/dryad.gv1jj11/1
title: jfb13568-sup-0001-TableS1

description: Genotype data from 13 microsatellite loci used to evaluate genetic divergence and diversity in 11 humpback whitefish Coregonus clupeaformis complex collections from Alaska. The genotype data is formatted for use in the population genetic analysis software FSTAT.
DOI: 10.5061/dryad.kn95474/1
title: Suppl dataset 1 RNAseq

description: The ER stress transcriptome was profiled in maize B73 seedlings treated with 5 g ml-1 TM for 0, 3, 6, 12, 24, 36, and 48 h.  (A 48-h mock-treated sample was included.)   RNA was extracted from root samples and cDNA libraries were generated and subjected to DNA sequencing.  Read sequences from three biological replicates (each with two technical replicates) were aligned to the maize genome v4.  Read counts were normalized and differential gene expression was assessed using generalized linear models.  Tab 1: Cluster analysis.  Tab 2: RPKM values during time course following TM treatment.  Tab 3: Mean and standard error of RPKM values.
DOI: 10.5061/dryad.kn95474/2
title: Suppl dataset 2 CHIPseq bZIP60 & 17

description: Chromatin immunoprecipitation analysis was carried out in triplicate to identify the direct transcriptional targets for ZmbZIP60 and ZmbZIP17.  GFP tagged forms of the bZIP transcription factors (minus their transmembrane and lumen-facing domains) were transfected into maize seedling mesophyll protoplasts and after incubation nuclei were isolated, chromatin extracted and fragmented by sonication.  GFP tagged ZmbZIP60 and ZmbZIP91 were immunoprecipitated with anti-GFP antibody and the coimmunoprecipitated DNA fragments were eluted, used to construct DNA libraries and subject to DNA sequencing. Read sequences were aligned to maize genome version 4.  Peaks were identified and their intersection with 500 bp upstream in the promoter regions of the various genes was computed to give a peak score.
DOI: 10.5061/dryad.mk63jb7/1
title: ICEHptfs_Alignment_Indonesia
DOI: 10.5061/dryad.mq25897/6
title: demographic_history_files

description: Model templates, parameter files, observed SFS and scripts needed to run demographic analyses.
DOI: 10.5061/dryad.ms750/1
title: raw data

description: the raw data of statistics-graph
DOI: 10.5061/dryad.nm1ns61/2
title: All Quality Controlled Data

description: All carbonate chemistry, nutrient chemistry, and temperature data from the two 24 hour sampling periods.
DOI: 10.5061/dryad.th2c5f7/1
title: CumulativeBiomass_by_LongevityClass_Data_Dryad

description: See readme
DOI: 10.5061/dryad.vm125vv/1
title: Aboveground biomass in homogeneous soil and heterogeneous soil
DOI: 10.5061/dryad.vm125vv/2
title: Root biomass in homogeneous and heterogeneous soils
DOI: 10.5061/dryad.vm125vv/3
title: Aboveground biomass in different patches within heterogeneous soil
DOI: 10.5061/dryad.vm125vv/4
title: Aboveground biomass in pure soils
DOI: 10.5061/dryad.vm125vv/5
title: Root biomass in pure soils
DOI: 10.5061/dryad.10h01t1/1
title: data for dryad

description: This data was used to investigate the effects of TLR heterozygosity on survival of song sparrows from Mandarte Island BC, Canada,
DOI: 10.5061/dryad.17qk1fc/1
title: Lasne et al. 2018 DATA
DOI: 10.5061/dryad.2jr1648/1
title: Historical presence data and environmental variables used in Maxent

description: Historical presence localities were present in file of historical_presence.csv, and 28 environmental varibales with resolution of 1km were provided in a document of China_1km. These are the files that can be directly used in the Maxent model.
DOI: 10.5061/dryad.35kg335/10
title: MRI dataset - Subject 09
DOI: 10.5061/dryad.35kg335/11
title: MRI dataset - Subject 10
DOI: 10.5061/dryad.35kg335/12
title: MRI dataset - Subject 11
DOI: 10.5061/dryad.35kg335/13
title: MRI dataset - Subject 12
DOI: 10.5061/dryad.35kg335/14
title: MRI dataset - Subject 13
DOI: 10.5061/dryad.35kg335/15
title: MRI dataset - Subject 14