cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21081242.v2
title: CircSUCO promotes proliferation and differentiation of chicken skeletal muscle satellite cells <i>via</i> sponging miR-15

description: 1. In a previous high-throughput sequencing study, a novel circular RNA (circRNA) generated from a SUN domain containing ossification factor (<i>SUCO</i>) gene transcript (circSUCO) was differentially expressed during the embryonic muscle development. This study aimed to further explore the effect of circSUCO on chicken skeletal muscle development. 2. The experiment analysed the expression patterns of circSUCO in Tianfu broilers and clarified its function in the chicken skeletal muscle satellite cells (SMSC) after circSUCO knockdown. The qPCR results showed circSUCO was highly expressed in skeletal muscle and has different expression levels during various development periods. 3. Mechanistically, a series of <i>in vitro</i> experiments showed that circSUCO interference suppressed proliferation and differentiation of SMSC. In addition, it was observed that circSUCO competitively binds with microRNAs such as miR-15a, miR-15b-5p, and miR-15c-5p according to the dual-luciferase assay and qPCR. 4. Correlation was positive between the circSUCO expression level and the ratio of the breast muscle. The results revealed that circSUCO could play a positive role in proliferation and differentiation of SMSC <i>via</i> sponging miR-15a, miR-15b-5p, and miR-15c-5p, hence, may contribute to skeletal muscle development in chicken.
DOI: 10.21227/c1d0-2856
title: Features Vectors of IDriveGenes: Cancer Driver Genes Dataset

description: The development of high throughput sequencing technologies i.e. Next Generation Sequencing (NGS) is revolutionizing the exploration of cancer. Though sequence datasets are highly complex, mutation can occur randomly in DNA or RNA sequences that can make cells sicker or less fit. The unusual growth and behavior of genes in cells cause cancer. Cancer-driver gene cells grow when mutation occurs. Identification of cancer driver genes is a critical and challenging issue for researchers. In the proposed work, initially, robust features are extracted from the sequence dataset through Position Relative Incidence Matrix (PRIM) integrated with Accumulative Absolute Position Incidence Vector (AAPIV) generation. PRIM and AAPIV convert the single-dimensional sequence data into 2-dimensional numeric data. Support Vector Machine (SVM), Neural Network (NN), and Random Forest (RF) are used to train the model. The proposed model is validated with different validation methods i.e., independent testing, k-fold crossvalidation, self-consistency, and jackknife testing. The proposed model predicts whether the given primary structure corresponds to cancer driver genes or not. Results analyses show 95%, 92%, and 69% accuracy on RF, Artificial Neural Networks (ANN), and SVM respectively. The comparative analysis with existing state-of-the-art models i.e., 20/20+ and Multimodal Deep Neural Network by integrating Multi-dimensional Data (NDNNMD) shows that the proposed model outperforms the existing techniques.
DOI: 10.6084/m9.figshare.22316479
title: Description of the data collected by observers in the French southern fisheries (Kerguelen, Crozet, Saint-Paul & Amsterdam, SIOFA) and the list of associated quality checks.

description: This document describes all the data fields that can be collected by scientific observers aboard french fishing vessels operating within the EEZ of Kerguelen, Crozet, Saint-Paul & Amsterdam and the SIOFA area. The fields names are in french which is the language used by observers. Each field is described and the format is given with the data validation constraints that can be thresholds or standardised vocabulary (“Referentiel”). The comprehensive content of each of the “Referentiel” is given in chapter 4. Chapter 5 provides a list of all the checkings items that can be used for quality assurance by observers at sea, each items contains up to 5 conditions and when those conditions are triggered the data are flagged so that the observer can cross check informations.
DOI: 10.6084/m9.figshare.22316479.v1
title: Description of the data collected by observers in the French southern fisheries (Kerguelen, Crozet, Saint-Paul & Amsterdam, SIOFA) and the list of associated quality checks.

description: This document describes all the data fields that can be collected by scientific observers aboard french fishing vessels operating within the EEZ of Kerguelen, Crozet, Saint-Paul & Amsterdam and the SIOFA area. The fields names are in french which is the language used by observers. Each field is described and the format is given with the data validation constraints that can be thresholds or standardised vocabulary (“Referentiel”). The comprehensive content of each of the “Referentiel” is given in chapter 4. Chapter 5 provides a list of all the checkings items that can be used for quality assurance by observers at sea, each items contains up to 5 conditions and when those conditions are triggered the data are flagged so that the observer can cross check informations.
DOI: 10.23728/b2share.7e9406cbc86549cbb16e221957e15edb
title: Tilting or twisting? Using anisotropic solvent diffusion in polymeric thermo-responsive LLC phases for the distinction of spatial reorientation versus inversion of the helical polymer backbone
DOI: 10.15131/shef.data.22306045
title: A moonlighting role for LysM peptidoglycan binding domains underpins Enterococcus faecalis daughter cell separation

description: Raw data from main figures and supplementary material for Salamaga et al., 2023, <em>A moonlighting role for LysM peptidoglycan binding domains underpins Enterococcus faecalis daughter cell separation,</em> Comms Biol (accepted).
DOI: 10.15131/shef.data.22306045.v1
title: A moonlighting role for LysM peptidoglycan binding domains underpins Enterococcus faecalis daughter cell separation

description: Raw data from main figures and supplementary material for Salamaga et al., 2023, <em>A moonlighting role for LysM peptidoglycan binding domains underpins Enterococcus faecalis daughter cell separation,</em> Comms Biol (accepted).
DOI: 10.5281/zenodo.7759516
title: None

description: None
DOI: 10.5281/zenodo.7759517
title: None

description: None
DOI: 10.5281/zenodo.7759543
title: None

description: None
DOI: 10.6084/m9.figshare.21829017.v2
title: Geographical subdivision of Alviniconcha snail populations in the Indian Ocean hydrothermal vent regions

description: The data include input data used for molecular analyses in the study "Geographical subdivision of Alviniconcha snail populations in the Indian Ocean hydrothermal vent regions."
DOI: 10.5519/qd.amtajanc
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (191 records)
DOI: 10.5281/zenodo.7640708
title: A. Fontana and L. Bellon, Dataset for Phys. Rev. E 107, 034118 (2023) : Linking fluctuation and dissipation in spatially extended out-of-equilibrium systems

description: In this repository, you can find the data used for the salient plots in the article (10.1103/PhysRevE.107.034118), a script you can use to plot such data and a folder with some functions used in the script. All files are in MATLAB format.
DOI: 10.5281/zenodo.7640707
title: A. Fontana and L. Bellon, Dataset for Phys. Rev. E 107, 034118 (2023) : Linking fluctuation and dissipation in spatially extended out-of-equilibrium systems

description: In this repository, you can find the data used for the salient plots in the article (10.1103/PhysRevE.107.034118), a script you can use to plot such data and a folder with some functions used in the script. All files are in MATLAB format.
DOI: 10.5281/zenodo.7677729
title: FastKGQA: A modified knowledge base of the MoviesQA dataset for prototyping

description: <strong>Full Changelog</strong>: https://github.com/d1egoprog/FastKGQA/commits/1.0
DOI: 10.5281/zenodo.7677730
title: FastKGQA: A modified knowledge base of the MoviesQA dataset for prototyping

description: <strong>Full Changelog</strong>: https://github.com/d1egoprog/FastKGQA/commits/1.0
DOI: 10.34740/kaggle/dsv/5213482
title: YouTube Daily
DOI: 10.5281/zenodo.7758870
title: ArrayCGH microarray images for 'Autoencoder and NCA based neural network model to estimate survival prognosis in multiple myeloma using arrayCGH data'

description: ArrayCGH microarray images for 'Autoencoder and NCA based neural network model to estimate survival prognosis in multiple myeloma using arrayCGH data'
description: This study was supported by the funds granted by DBT (Government of India) grant no. BT/MED/30/SP11006/2015.
DOI: 10.5281/zenodo.7758869
title: ArrayCGH microarray images for 'Autoencoder and NCA based neural network model to estimate survival prognosis in multiple myeloma using arrayCGH data'

description: ArrayCGH microarray images for 'Autoencoder and NCA based neural network model to estimate survival prognosis in multiple myeloma using arrayCGH data'
description: This study was supported by the funds granted by DBT (Government of India) grant no. BT/MED/30/SP11006/2015.
DOI: 10.34943/64edb1fd-a694-4779-aab1-5ea5f567c10f
title: Fraser River Delta Upper Slope Conductivity Temperature Depth Deployed 2023-03-16

description: The Sea-Bird SeaCAT SBE19plus V2 6936 was deployed on 2023-03-16 at Fraser River Delta Upper Slope. This site is located on the upper slope of the Fraser River delta, where depth is approximately 100 metres. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.25934/pr00008751
title: Prediction of the treatment benefit of intravenous alteplase treatment for acute ischemic stroke

description: Alteplase is the drug of choice for fibrinolytic treatment (an emergency treatment used to dissolve blood clots before they become fatal) of patients with acute ischemic stroke (AIS). AIS is characterized by the sudden loss of blood circulation to an area of the brain, resulting in a corresponding loss of functions associated with the nervous system. The effect of alteplase is time-dependent and outcome after stroke is affected by several prognostic factors such as stroke severity and age. Patients at risk of harm from alteplase should ideally be identified prior to treatment with alteplase. Modelling the effect of alteplase as a function of prognostic factors and credible treatment effect modifiers (i.e. time-to-treatment) is a reasonable approach to predict individualized treatment benefit of alteplase in patients with acute ischemic stroke. Several years ago, David Kent et al. developed two separate prediction models (Stroke-TPI) for treatment benefit of alteplase treatment in AIS.These models did not use the full modified Rankin Scale (mRS) (measures the degree of disability/dependence after a stroke and is widely applied for evaluating recovery from stroke, with a scale from 0 to 6) as outcome and collapsed the National Institutes of Health Stroke Scale (NIHSS) that represents stroke severity in three broad categories. NIHSS is a tool used by healthcare providers to objectively quantify the impairment caused by a stroke and aid planning post-acute care. Furthermore, it did not use the data from IST-3, a large pragmatic open-label RCT of alteplase versus no alteplase in 3035 AIS patients.(IST-3 collaborative group et al., 2012) There is a need to develop a single updated prediction model with the full mRS as outcome and the full NIHSS scale for stroke severity, based on the available data of high-quality randomized clinical trials (RCT) for alteplase. Treatment benefit will be defined as the difference in probability of functional independence (mRS 0-2; 0-2 on the modified Rankins Scale represents a good outcome, with functional independence for the patient) between alteplase treatment and no treatment. Our present aim is to develop a model that could support physicians and patients in shared decision making for treatment with alteplase, by providing individualized estimates of treatment benefit. Results of this study will be submitted for publication in an international scientific journal.
DOI: 10.6084/m9.figshare.21591213
title: Memorizing Tactics from Static Diagram in Basketball How Does Expertise Level Mediate the Effect of Coach’s Pointing Gestures and Gaze Cues.

description: Data of the study: <strong>Memorizing Tactics from Static Diagram in Basketball: How Does Expertise Level Mediate the Effect of Coach’s Pointing Gestures and Gaze Cues?</strong> <br>
DOI: 10.6084/m9.figshare.21591213.v3
title: Memorizing Tactics from Static Diagram in Basketball How Does Expertise Level Mediate the Effect of Coach’s Pointing Gestures and Gaze Cues.

description: Data of the study: <strong>Memorizing Tactics from Static Diagram in Basketball: How Does Expertise Level Mediate the Effect of Coach’s Pointing Gestures and Gaze Cues?</strong> <br>
DOI: 10.6084/m9.figshare.21591213.v2
title: Memorizing Tactics from Static Diagram in Basketball How Does Expertise Level Mediate the Effect of Coach’s Pointing Gestures and Gaze Cues.

description: Data of the study: <strong>Memorizing Tactics from Static Diagram in Basketball: How Does Expertise Level Mediate the Effect of Coach’s Pointing Gestures and Gaze Cues?</strong> <br>
DOI: 10.4121/0ec69d2a-d966-4dcd-a415-f05d756636d6
title: ChildsPlayAccessibility data repository: spatial data underlying the conference paper "Easy as child’s play? Co-designing a network-based metric for children’s access to play space"

description: These spatial data contains potential barriers (such as roads, railways, and large greenspaces) and attractive places (such as playgrounds, schoolyards, and small parks) to children's unsupervised outdoor play in urban environments for three urban environments: Utrecht, The Netherlands; Milan, Italy; and Ljubljana, Slovenia. These data illustrate the implementations of the child's play accessibility metric, that was co-designed by the authors together with experts on children's health and the urban environment. The spatial data that was used during the co-design process is also part of this repository.
DOI: 10.5519/qd.0jo1gh69
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (289 records)
DOI: 10.5281/zenodo.7544085
title: The biodegaration of dimethoate by S. marcescens and DNA sequences

description: The biodegaration of dimethoate by S. marcescens and DNA sequences
DOI: 10.5281/zenodo.7754673
title: The biodegaration of dimethoate by S. marcescens and DNA sequences

description: The biodegaration of dimethoate by S. marcescens; DNA sequence; MBL gene expression; survival ship of bacteria to insects
DOI: 10.6084/m9.figshare.22060934
title: Intraspecific diversity in the mechanisms underlying abamectin resistance in a cosmopolitan pest

description: Villacis-Perez et al. (2023) uncovers the complex basis of abamectin resistance, and highlights the intraspecific diversity of genetic mechanisms underlying resistance in <em>Tetranychus urticae</em>. This study used experimental evolution in combination with a population-level based bulked segregant analysis (BSA) and with next-generation sequencing to map quantitative trait loci (QTL) associated with abamectin resistance in two genetically unrelated strains of <em>T. urticae, </em>ROS-ITi and MAR-ABi (Kurlovs et al., 2019). Results reveal how unrelated populations of a single arthropod species respond to abamectin selection, the (polygenic) structure of abamectin resistance, and the genes and mechanisms likely to underlie abamectin resistance. The Supplementary Data for Villacis-Perez et al. (2023) comprises: Data S1: genomic VCF (gzipped) used as input for the RUN_BSA1.02.py script available at https://github.com/rmclarklab/BSA (Kurlovs et al. 2019, PMID: 31499416); Data S2: RUN_BSA1.02.py commands using the gvcf in Data S1 as input.; Data S3: output of the RUN_BSA1.02.py script for aBSA (MAR-ABi); Data S4: output of the RUN_BSA1.02.py script for gBSA ROS-ITi.
DOI: 10.5281/zenodo.3925602
title: Cultural heritage adaptive reuse in Salerno: challenges and solutions. Dataset

description: Dataset analysed in Pintossi, N., Ikiz Kaya, D., Pereira Roders, A. (2023). Cultural heritage adaptive reuse in Salerno: Challenges and solutions. City, Culture and Society, 100505. https://doi.org/10.1016/j.ccs.2023.100505 Date of data collection: 27/11/2018 Geographic location of data collection: Salerno, Italy. The venue of the data collection is <em>Salone dei marmi, Palazzo di Città</em>, via Roma, 84121 Salerno, Italy Activity of data collection: Historic Urban Landscape workshop 2 - Salerno. Held in Salerno, Italy, on 26-27/11/2018 Aim of data collection: Multi-scale, participatory identification of challenges entailed in the adaptive reuse of cultural heritage and solutions Methods for collection/generation of data: see the methodology section in Pintossi, N., Ikiz Kaya, D., Pereira Roders, A. (2023). Cultural heritage adaptive reuse in Salerno: Challenges and solutions. City, Culture and Society, 100505. https://doi.org/10.1016/j.ccs.2023.100505 Researchers facilitating roundtable discussion and writing down paper version of data: Marco Acri, Gaia Daldanise, Gamze Dane, Cristina Garzillo, Antonia Gravagnuolo, Lu Lu, Nadia Pintossi, and Ruba Saleh Researcher translating to English, transcribing data in the digital tabular dataset, and cleaning the data: Nadia Pintossi Original language of the data: English, Italian, and mix of English and Italian
description: {"references": ["Pintossi, N., Ikiz Kaya, D., Pereira Roders, A. (2023). Cultural heritage adaptive reuse in Salerno: Challenges and solutions. City, Culture and Society, 100505. https://doi.org/10.1016/j.ccs.2023.100505", "Pintossi, N. (2022). Challenges and potential solutions for cultural heritage adaptive reuse: A comparative study employing the Historic Urban Landscape approach (Bouwstenen). Eindhoven University of Technology. https://research.tue.nl/files/205757720/20220706_Pintossi_hf.pdf"]}
DOI: 10.5281/zenodo.3925601
title: Cultural heritage adaptive reuse in Salerno: challenges and solutions. Dataset

description: Dataset analysed in Pintossi, N., Ikiz Kaya, D., Pereira Roders, A. (2023). Cultural heritage adaptive reuse in Salerno: Challenges and solutions. City, Culture and Society, 100505. https://doi.org/10.1016/j.ccs.2023.100505 Date of data collection: 27/11/2018 Geographic location of data collection: Salerno, Italy. The venue of the data collection is <em>Salone dei marmi, Palazzo di Città</em>, via Roma, 84121 Salerno, Italy Activity of data collection: Historic Urban Landscape workshop 2 - Salerno. Held in Salerno, Italy, on 26-27/11/2018 Aim of data collection: Multi-scale, participatory identification of challenges entailed in the adaptive reuse of cultural heritage and solutions Methods for collection/generation of data: see the methodology section in Pintossi, N., Ikiz Kaya, D., Pereira Roders, A. (2023). Cultural heritage adaptive reuse in Salerno: Challenges and solutions. City, Culture and Society, 100505. https://doi.org/10.1016/j.ccs.2023.100505 Researchers facilitating roundtable discussion and writing down paper version of data: Marco Acri, Gaia Daldanise, Gamze Dane, Cristina Garzillo, Antonia Gravagnuolo, Lu Lu, Nadia Pintossi, and Ruba Saleh Researcher translating to English, transcribing data in the digital tabular dataset, and cleaning the data: Nadia Pintossi Original language of the data: English, Italian, and mix of English and Italian
description: {"references": ["Pintossi, N., Ikiz Kaya, D., Pereira Roders, A. (2023). Cultural heritage adaptive reuse in Salerno: Challenges and solutions. City, Culture and Society, 100505. https://doi.org/10.1016/j.ccs.2023.100505", "Pintossi, N. (2022). Challenges and potential solutions for cultural heritage adaptive reuse: A comparative study employing the Historic Urban Landscape approach (Bouwstenen). Eindhoven University of Technology. https://research.tue.nl/files/205757720/20220706_Pintossi_hf.pdf"]}
DOI: 10.6084/m9.figshare.22316869
title: Supplementary Material for: Risk of psychiatric disorders in patients with psoriasis prescribed acitretin versus disease-modifying antirheumatic drugs: a nationwide matched cohort study

description: Background: Acitretin has been linked to the development of psychiatric disturbance. Objectives: To assess the psychiatric hazards in patients with psoriasis prescribed acitretin compared with those prescribed disease-modifying antirheumatic drugs (DMARDs). Methods: This is a nationwide matched cohort study. From Taiwan’s National Health Insurance Research Database, Adult patients with psoriasis between 1997 and 2013 were screened. Patients prescribed acitretin for at least 30 days per year on average (acitretin cohort) were matched 1:2 with those prescribed DMARDs for at least 30 days per year on average (reference cohort), by means of age, gender, and psoriasis duration. Patients prescribed medication of the corresponding cohort for more than 7 days during the observation period were excluded. Cumulative incidences of psychiatric disorders in both cohorts were plotted with the Kaplan-Meier method. The modified Cox regression models were constructed to estimate hazard ratios (HRs). Results: In total, 1,152 and 2,304 patients in the acitretin and the reference cohort, respectively, were included. The 4-year cumulative incidence of overall psychiatric disorders (19.62% vs. 12.06%; p&lt;.001), mood disorders (12.81% vs. 7.67%; p&lt;.001), and psychosis (7.21% vs. 4.63%; p&lt;.001) in the acitretin cohort were significantly higher than those in the reference cohort. Acitretin was independently associated with psychiatric disorders (HR 1.51, 95% confidence interval [CI] 1.23-1.85). The risk is more accentuated in the subgroups of comorbid chronic liver disease (HR 2.60, 95% CI 1.56-4.33) or psoriatic arthritis (HR 3.23, 95% CI 1.75-5.97). Other independent risk factors included insomnia, acute coronary syndrome, females, and age. Conclusions: Compared with disease-modifying antirheumatic drugs, acitretin was associated with higher hazards of psychiatric disorders among psoriasis patients.