cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/3k5ks5w988.3
title: The effect of the collection system on biowaste quality

description: The current database is the backbone of the research by Angouria-Tsorochidou and Thomsen (2020) “The effect of the collection system on biowaste quality and a modelling framework to evaluate organic waste-derived fertilizers” Elisavet Angouria-Tsorochidou1, 2 and Marianne Thomsen1, 2*. The database consists of two data sets, i) quality data of source-separated organic fraction of municipal solid waste (SS-OFMSW) [column C:CN] and ii) quality data of mechanically separated organic fraction of municipal solid waste (MS-OFMSW) from mixed collected residual waste [column CP:DY.] The goal of this database is to present aggregated data on biowaste quality for the ease of future research on circular bio-economy. The database is given on the “Data” tab. It includes 111 cases (row 1) and consists of 55 registered parameters (column A). The references for each case is given in row 58 for all 111 cases while the bibliographic form is given in the “Bibliography” tab in detail. The authors suggest that before the utilization of each case, the users should refer to the original data paper for further information, as well as, citing the original reference. The data included in the database are transformed into uniform units to allow for comparison. The “Memorandum” tab includes further information for the inserted data. 1 Research Group on Eco-Industrial System Analysis, Department of Environmental Science, Aarhus University, Frederiksborgvej 399, Postboks 358, DK-4000, Roskilde, Denmark 2 Aarhus University Centre for Circular Bioeconomy *Corresponding Author email: mth@envs.au.dk The research was performed as part of the Horizon 2020 project DECISIVE (Decentralised valorisation of biowaste) under grant agreement N° 689229. The Graduate School of Science and Technology at Aarhus University further supported this work.
DOI: 10.17632/rh37cdm9hv.1
title: Data for: QEMSCAN as a method of semi-automated crystal size distribution analysis: Insights from Apollo 15 mare basalts

description: Data collected for the manuscript 'QEMSCAN as a method of semi-automated crystal size distribution analysis: Insights from Apollo 15 mare basalts'. In this study we investigate the feasibility of using Quantitative Evaluation of Minerals by SCANing electron microscopy (QEMSCAN) for semi-automated crystal size distribution analysis. Presented here are full resolution backscattered electron (BSE) maps, QEMSCAN mineral phase maps and QEMSCAN-derived energy dispersive x-ray (EDS) maps collected as part of this project. Backscattered electron (BSE) maps of each sample were gathered using a FEI QUANTA 650 field emission gun (FEG) scanning electron microscope (SEM) at the University of Manchester. The FEI QEMSCAN at the University of Manchester operates using the same QUANTA 650 FEG SEM, equipped with a single Bruker XFlash energy dispersive X-ray spectrometer (EDS), at an accelerating voltage of 25 kV and a 10 nA beam current. This set-up was used to collect QEMSCAN data in field scan mode, which produces full images of each field of the sample block, giving both qualitative major element chemical maps and a mineral phase map of the full thin section. Mineral phase maps of each sample were acquired using step sizes (i.e. pixel sizes) of 5, 10 and 20 microns (referred to as Q5, Q10 and Q20). The EDS maps were produced using the 5 micron step-size QEMSCAN field scans for each sample. The data are divided into folders based on sample thin section number.
DOI: 10.5519/qd.24zrw5my
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4535617 records)
DOI: 10.17632/9pxfpybh7f.2
title: Modelling tool for element (heavy metals, nutrients and carbon) flows during anaerobic digestion (AD) for the assessment of potential organic waste-derived fertilizers

description: The current modelling tool is part of the research by Angouria-Tsorochidou and Thomsen (2020) “The effect of the collection system on biowaste quality and a modelling framework to evaluate organic waste-derived fertilizers” Elisavet Angouria-Tsorochidou1, 2 and Marianne Thomsen1, 2*. The tool we present models the value of the digestate as potential organic fertilizer, measured by its nutrient content, and its quality, measured by its heavy metal content as a function of the ingestate characteristics and AD performance. We thus propose a simple model for pre-assessment of the digestate based on the ingestate quality. Additionally, we have created a database with 111 cases that includes biowaste quality data of i) source-separated organic fraction of municipal solid waste (SS-OFMSW) and ii) of mechanically separated organic fraction of municipal solid waste (MS-OFMSW) from mixed collected residual waste (Angouria-Tsorochidou, 2020/ DOI: 10.17632/3k5ks5w988.1). The database can be used as a source of quality data for the user to enter in the tool. 1 Research Group on Eco-Industrial System Analysis, Department of Environmental Science, Aarhus University, Frederiksborgvej 399, Postboks 358, DK-4000, Roskilde, Denmark 2 Aarhus University Centre for Circular Bioeconomy *Corresponding Author email: mth@envs.au.dk The research was performed as part of the Horizon 2020 project DECISIVE (Decentralised valorisation of biowaste) under grant agreement N° 689229. The Graduate School of Science and Technology at Aarhus University further supported this work. For feedback please contact Elisavet Angouria-Tsorochidou at elisavet.tsor@gmail.com
DOI: 10.18716/nmrshiftdb2/75421
title: NMR data for 1-chloro-4-[2,2,2-trichloro-1-(4-chlorophenyl)ethyl]benzene
DOI: 10.17632/9ghd649nf7.1
title: Closure investigation on cloud condensation nuclei ability of processed anthropogenic aerosols

description: Raw data for Figures of the manuscript "Closure investigation on cloud condensation nuclei ability of processed anthropogenic aerosols"
DOI: 10.14469/hpc/6919
title: '4-ethyl-2-methoxyphenyl (Z)-hexadec-9-enoate' synthesis data

description: Chemical structure, NMR and IR data of synthesized '4-ethyl-2-methoxyphenyl (Z)-hexadec-9-enoate' ester. Notice: Some oleic acid unreacted influenced both NMR and IR data. Apologies, I could not manage to determine the impurity peaks of NMR, but did able to determine that of IR.
DOI: 10.25345/c5d40m
title: MassIVE MSV000085064 - Schwabe_Metalloid_and_Lanthanide_Enrichment
title: The production of metallophores by the above mentioned organisms was investigated in addition to the ability of culture supernatants to mobilize strategic elements.
DOI: 10.17632/ypx3sw2f7c.3
title: single-cell RNA-seq Data for "Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior"

description: Single-cell RNA-seq (scRNA-seq) data collected from the ventral part of ventromedial hypothalamus (VMH) are listed below (after alignment process). You can find the detailed information for these data in the following paper, "Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior" (doi: 10.1016/j.cell.2019.09.020). Briefly, we performed two independent scRNA-seq methods, SMART-seq & 10x (Chromium v2 chemistry), and all 10x data (each dataset was collected from 2-4 brains) were collected for Act-seq (behavior + scRNA-seq), whereas SMART-seq data included Retro-seq data (retrograde-labeling + scRNA-seq; see the detail in the metadata).
DOI: 10.17632/26r263sm6w.1
title: Mosaic mutant analysis identifies PDGFRα/PDGFRβ as negative regulators of adipogenesis

description: Quantitative data associated with the manuscript "Mosaic mutant analysis identifies PDGFRα/PDGFRβ as negative regulators of adipogenesis"
DOI: 10.17632/bdnrj3fsyx.1
title: Data of baseline(96 dyads)

description: Testing the intra- and inter-rater reliability of two Chinese versions of EQ-5D-Y, characteristics of respondents
DOI: 10.17632/8zdt3257fb.1
title: Closure investigation on cloud condensation nuclei ability of processed anthropogenic aerosols

description: Raw data for Figures of the manuscript "Closure investigation on cloud condensation nuclei ability of processed anthropogenic aerosols"
DOI: 10.18716/nmrshiftdb2/75664
title: NMR data for methyl 2-phenylsulfanylacetate
DOI: 10.17632/793w7k59c3.1
title: baseline and followup for 84 dyads

description: Testing the intra- and inter-rater reliability of two Chinese versions of EQ-5D-Y, level change for each dimension, as well as VAS and Index score
DOI: 10.17632/b8ckvvdmr6.1
title: NON-NEUTRALIZING ANTIBODIES FROM A MARBURG INFECTION SURVIVOR MEDIATE PROTECTION BY INDUCTION OF STRONG FC-EFFECTOR FUNCTIONS AND ENHANCEMENT OF NEUTRALIZING EFFECTS OF OTHER ANTIBODIES, Philipp Ilinykh et al

description: MR235, MR228 MARV library binding data
DOI: 10.5281/zenodo.3606275
title: Study replicability dataset 1

description: This dataset contains all data collected to conduct the studies on Chapter 2 and 5 of Ph.D. thesis "Augmented fine-grained defect prediction for code review" Bug prediction is aimed at identifying software artifacts that are more likely to be defective in the future. Most approaches defined so far target the prediction of bugs at class/file level. Nevertheless, past research has provided evidence that this granularity is too coarse-grained for its use in practice. As a consequence, researchers have started proposing defect prediction models targeting a finer granularity (particularly method-level granularity), providing promising evidence that it is possible to operate at this level. Particularly, models mixing product and process metrics provided the best results. We present a study in which we first replicate previous research on method-level bug-prediction, by using different systems and timespans. Afterwards, based on the limitations of existing research, we (1) re-evaluate method-level bug prediction models more realistically and (2) analyze whether alternative features based on textual aspects, code smells, and developer-related factors can be exploited to improve method-level bug prediction abilities. Key results of our study include that (1) the performance of the previously proposed models, tested using the same strategy but on different systems/timespans, is confirmed; but, (2) when evaluated with a more practical strategy, all the models show a dramatic drop in performance, with results close to that of a random classifier. Finally, we find that (3) the contribution of alternative features within such models is limited and unable to improve the prediction capabilities significantly. As a consequence, our replication and negative results indicate that method-level bug prediction is still an open challenge.
DOI: 10.5281/zenodo.3606276
title: Study replicability dataset 1

description: This dataset contains all data collected to conduct the studies on Chapter 2 and 5 of Ph.D. thesis "Augmented fine-grained defect prediction for code review" Bug prediction is aimed at identifying software artifacts that are more likely to be defective in the future. Most approaches defined so far target the prediction of bugs at class/file level. Nevertheless, past research has provided evidence that this granularity is too coarse-grained for its use in practice. As a consequence, researchers have started proposing defect prediction models targeting a finer granularity (particularly method-level granularity), providing promising evidence that it is possible to operate at this level. Particularly, models mixing product and process metrics provided the best results. We present a study in which we first replicate previous research on method-level bug-prediction, by using different systems and timespans. Afterwards, based on the limitations of existing research, we (1) re-evaluate method-level bug prediction models more realistically and (2) analyze whether alternative features based on textual aspects, code smells, and developer-related factors can be exploited to improve method-level bug prediction abilities. Key results of our study include that (1) the performance of the previously proposed models, tested using the same strategy but on different systems/timespans, is confirmed; but, (2) when evaluated with a more practical strategy, all the models show a dramatic drop in performance, with results close to that of a random classifier. Finally, we find that (3) the contribution of alternative features within such models is limited and unable to improve the prediction capabilities significantly. As a consequence, our replication and negative results indicate that method-level bug prediction is still an open challenge.
DOI: 10.18716/nmrshiftdb2/75667
title: NMR data for InChI=1S/C6H10O2/c1-2-3-7-4-6-5-8-6/h2,6H,1,3-5H2
DOI: 10.5281/zenodo.3695496
title: Dataset related to the article: "IS THE PLACENTAL PROTEOME IMPAIRED IN WELL-CONTROLLED GESTATIONAL DIABETES?"

description: This record contains raw data related to the article" IS THE PLACENTAL PROTEOME IMPAIRED IN WELLCONTROLLED GESTATIONAL DIABETES?" ABSTRACT<br> In pregnancy complicated by gestational diabetes (GDM), the human placenta shows several pathological functional and structural changes, but the extent to which maternal glycemic control contributes to placental abnormalities remains unclear. The aim of this study was to profile and compare the proteome of placentas from healthy pregnant women and those with GDM, to investigate the placenta-specific protein composition and possible changes of its function in presence of GDM. Quantitative proteomic analysis, based on LC-MS<sup>E</sup> approach, revealed that higher (≈15% increase) levels of galectin 1 and collagen alpha-1 XIV chain (although the difference regarding the latter was at the limit of significance) were present in GDM samples, while heat shock 70 kDa protein 1A/1B was less abundant in GDM placental tissue. These data seem to indicate that GDM, when well-controlled, did not markedly affect the placental proteome.
DOI: 10.5281/zenodo.3695495
title: Dataset related to the article: "IS THE PLACENTAL PROTEOME IMPAIRED IN WELL-CONTROLLED GESTATIONAL DIABETES?"

description: This record contains raw data related to the article" IS THE PLACENTAL PROTEOME IMPAIRED IN WELLCONTROLLED GESTATIONAL DIABETES?" ABSTRACT<br> In pregnancy complicated by gestational diabetes (GDM), the human placenta shows several pathological functional and structural changes, but the extent to which maternal glycemic control contributes to placental abnormalities remains unclear. The aim of this study was to profile and compare the proteome of placentas from healthy pregnant women and those with GDM, to investigate the placenta-specific protein composition and possible changes of its function in presence of GDM. Quantitative proteomic analysis, based on LC-MS<sup>E</sup> approach, revealed that higher (≈15% increase) levels of galectin 1 and collagen alpha-1 XIV chain (although the difference regarding the latter was at the limit of significance) were present in GDM samples, while heat shock 70 kDa protein 1A/1B was less abundant in GDM placental tissue. These data seem to indicate that GDM, when well-controlled, did not markedly affect the placental proteome.
DOI: 10.5519/qd.fpu0kyv4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1344434 records)
DOI: 10.18716/nmrshiftdb2/75431
title: NMR data for 6-methoxy-2,4-dimethylpyridine-3-carbonitrile
DOI: 10.15468/fuphji
title: Elaphidiini (Coleoptera: Cerambycidae) from the Neotropical Region: new species, updated key, new synonym, and new records

description: This dataset contains the digitized treatments in Plazi based on the original journal article Nascimento, Francisco E. de L. (2018): Elaphidiini (Coleoptera: Cerambycidae) from the Neotropical Region: new species, updated key, new synonym, and new records. Acta Entomologica Musei Nationalis Pragae 58 (1): 177-185, DOI: 10.2478/aemnp-2018-0015
DOI: 10.15468/w6rqrw
title: A review of Scaphisomatini from Sulawesi, with descriptions of ten new species (Coleoptera: Staphylinidae: Scaphidiinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Löbl, Ivan (2018): A review of Scaphisomatini from Sulawesi, with descriptions of ten new species (Coleoptera: Staphylinidae: Scaphidiinae). Acta Entomologica Musei Nationalis Pragae 58 (1): 151-165, DOI: 10.2478/aemnp-2018-0013
DOI: 10.18716/nmrshiftdb2/75675
title: NMR data for 1,1,1-tribromobutan-2-one
DOI: 10.5525/gla.researchdata.986
title: Abrupt dietary changes between grass and hay alter faecal microbiota of ponies

description: Horses may develop metabolic disturbances in response to dietary changes. The aim of this study was to compare the faecal microbiota of ponies abruptly changed from grazing ad libitum to being fed a restricted hay-only diet and vice versa. The experiment consisted of 2, 14-day periods. On day 0 six ponies were abruptly transitioned from grass to a hay-only diet. At the end of period 1, ponies then were abruptly transferred back to grass for a further 14-days. Faecal samples were collected on days 1-3, 7, 14 of each period. Faecal microbial DNA was extracted and 16S libraries encompassing the V3 and V4 regions were generated prior Illumina NGS of 16S rRNA gene. α-diversity of the microbial communities was evaluated in QIIME, β-diversity was evaluated using UniFrac. Biomarker analysis was performed using LEfSe on Galaxy. There were no differences in α-diversity. LEfSe revealed 46 biomarkers, associated with day of the diet (LDA score &gt;2, P 0.05). LEfSe identified differences in phylum Actinobacteria and phylum Spirochaetes on day 14 of each experimental period between grass and hay diets. Class Bacilli, order Lactobacillales, family Lactobacillaceae, and genus Lactobacillus were presented in increased relative abundance on day 2 after an abrupt dietary change from hay to grass compared to all other days (P 0.05). A clustering of equine faecal samples by dietary group on days 1 and 3 following the abrupt change was observed on PCoA plots, while no clustering was observed on day 7 or 14 after an abrupt dietary change. There were 282/2221 (12.69 %) OTUs, which differed among individual ponies (P 0.05). On day 0, day 14 on hay and day 14 on grass Bacteroidetes was the most abundant phyla with Firmicutes being the second. However, on day 1 after an abrupt dietary change from grass to hay and on day 1 after an abrupt dietary change from hay to grass, Firmicutes was identified as the most abundant phylum followed by Bacteroidetes. The microbiota of grass-fed ponies responded differently to the abrupt change to hay compared to the response of hay-fed ponies abruptly transferred to grass in days 1-3. Abrupt changes from grass to hay and vice versa affect the faecal microbial community structure; moreover, the order of dietary change appears to have a profound affect in the first few days following the transition. An abrupt dietary change from hay to grass may represent a higher risk for hindgut pH to drop compared to abrupt change from grass to hay.
DOI: 10.5281/zenodo.3688787
title: Dataset related to the article "Pro-oxidant and pro-inflammatory effects of glycated albumin on cardiomyocytes"

description: This record contains raw data related to the article "Pro-oxidant and pro-inflammatory effects of glycated albumin on cardiomyocytes" A B S T R A C T<br> Human serum albumin (HSA) is the most abundant circulating protein in the body and presents an extensive range of biological functions. As such, it is prone to undergo post-translational modifications (PTMs). The nonenzymatic early glycation of HSA, one of the several PTMs undergone by HSA, arises from the addition of reducing sugars to amine group residues, thus modifying the structure of HSA. These changes may affect HSA functions impairing its biological activity, finally leading to cell damage.<br> The aim of this study was to quantitate glycated-HSA (GA) levels in the plasma of heart failure (HF) patients and to evaluate the biological effects of GA on HL-1 cardiomyocytes.<br> Plasma GA content from HF patients and healthy subjects was measured by direct infusion electrospray ionization mass spectrometry (ESI-MS). Results pointed out a significant increase of GA in HF patients with respect to the control group (p &lt; 0.05). Additionally, after stimulation with GA, proteomic analysis of HL-1 secreted proteins showed the modulation of several proteins involved, among other processes, in the response to stress. Further, stimulated cells showed a rapid increase in ROS generation, higher mRNA levels of the inflammatory cytokine interleukin-6 (IL-6) and tumor necrosis factor alpha (TNF-α), and higher levels of the oxidative 4-HNE-protein adducts and carbonylated proteins.<br> Our findings show that plasma GA is increased in HF patients. Further, GA exerts pro-inflammatory and prooxidant effects on cardiomyocytes, which suggest a causal role in the etiopathogenesis of HF.
description: This work was supported by the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie (grant agreement number 675132) and by the Italian Ministry of Health, Rome, Italy (Ricerca Corrente 2017 BIO 18, ID 2631209).
DOI: 10.5281/zenodo.3688786
title: Dataset related to the article "Pro-oxidant and pro-inflammatory effects of glycated albumin on cardiomyocytes"

description: This record contains raw data related to the article "Pro-oxidant and pro-inflammatory effects of glycated albumin on cardiomyocytes" A B S T R A C T<br> Human serum albumin (HSA) is the most abundant circulating protein in the body and presents an extensive range of biological functions. As such, it is prone to undergo post-translational modifications (PTMs). The nonenzymatic early glycation of HSA, one of the several PTMs undergone by HSA, arises from the addition of reducing sugars to amine group residues, thus modifying the structure of HSA. These changes may affect HSA functions impairing its biological activity, finally leading to cell damage.<br> The aim of this study was to quantitate glycated-HSA (GA) levels in the plasma of heart failure (HF) patients and to evaluate the biological effects of GA on HL-1 cardiomyocytes.<br> Plasma GA content from HF patients and healthy subjects was measured by direct infusion electrospray ionization mass spectrometry (ESI-MS). Results pointed out a significant increase of GA in HF patients with respect to the control group (p &lt; 0.05). Additionally, after stimulation with GA, proteomic analysis of HL-1 secreted proteins showed the modulation of several proteins involved, among other processes, in the response to stress. Further, stimulated cells showed a rapid increase in ROS generation, higher mRNA levels of the inflammatory cytokine interleukin-6 (IL-6) and tumor necrosis factor alpha (TNF-α), and higher levels of the oxidative 4-HNE-protein adducts and carbonylated proteins.<br> Our findings show that plasma GA is increased in HF patients. Further, GA exerts pro-inflammatory and prooxidant effects on cardiomyocytes, which suggest a causal role in the etiopathogenesis of HF.
description: This work was supported by the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie (grant agreement number 675132) and by the Italian Ministry of Health, Rome, Italy (Ricerca Corrente 2017 BIO 18, ID 2631209).
DOI: 10.18716/nmrshiftdb2/75433
title: NMR data for 2-chloro-4-methoxy-6-methylpyridine-3-carbonitrile
DOI: 10.15468/llzqwa
title: Larval morphology of Yateberosus, a New Caledonian endemic subgenus of Laccobius (Coleoptera: Hydrophilidae), with notes on ‘ Berosus - like’ larvae in Hydrophiloidea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fikáček, Martin, Minoshima, Yûsuke N., Jäch, Manfred A. (2018): Larval morphology of Yateberosus, a New Caledonian endemic subgenus of Laccobius (Coleoptera: Hydrophilidae), with notes on ‘ Berosus - like’ larvae in Hydrophiloidea. Acta Entomologica Musei Nationalis Pragae 58 (1): 195-206, DOI: 10.2478/aemnp-2018-0017
DOI: 10.18716/nmrshiftdb2/75434
title: NMR data for 4,6-dimethyl-2-propan-2-ylpyridine-3-carbonitrile