cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14410926
title: A dataset on changes in land use, precipitation, temperature, and streamflow or water yield

description: To review the impacts of land use and climate changes on streamflow, a comprehensive scientific literature search was conducted using various search engines including ‘web of science’, ‘Scopus’ and ‘Google Scholar’. The keywords used for the search are: “land use change”, “land cover change”, “land use/cover change”, “LULC change”, “climate change”, “streamflow”, “runoff”, “discharge”, “water yield”, ‘water resources”, and “hydrology”. Scopus was chosen for this search because it provides an extensive collection of high-quality scientific publications across multiple disciplines, ensuring access to a diverse and relevant set of peer-reviewed studies. Additionally, Scopus’s advanced search capabilities and indexing features allow for more precise and efficient filtering of articles compared to other databases. The literature was screened based on the following criteria: (1) joint impact of both land use change and climate change on streamflow; (2) quantitative information about changes in land use, precipitation and temperature, and streamflow or water yield; (3) all the above changes can be expressed as annual average percentage changes; and (4) information about the major land use transition. Additionally, other information such as region, Köppen-Geiger climate zone, catchment area, time period, source of climate, and land use data were also collected.
DOI: 10.15468/dl.km6b9q
title: Occurrence Download

description: A dataset containing 15806 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lathyrus clymenum L."
 ]
}

 The dataset includes 15806 records from 256 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031423-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ky977f
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidotrigla guentheri Hilgendorf, 1879",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 249 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031424-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byea9f
title: Occurrence Download

description: A dataset containing 201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lagenorhynchus obliquidens Gill, 1865",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 201 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031425-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gh34vz
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "TaxonKey is Rhincodon Smith, 1829",
 "Year 2005-2015"
 ]
}

 The dataset includes 63 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031426-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.44m7gn
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagmatias obliquidens (Gill, 1865)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 38 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031427-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11621877
title: Data supporting "A real-time, scalable, fast and resource-efficient decoder for a quantum computer"

description: Data includes the circuits (stim_circuits.zip) used to create samples to benchmark CC decoder across different noise rates and code sizes. The resulting accuracy and cycle data is in fpga_accuracy_data.csv. The memory footprint (in KB) of the algorithm for different code sizes is in fpga_memory_data.csv.

Weights of syndromes for different noise rates for both phenomenological and circuit-level noise at distance d=23 and d=21 are in noise_rate_sampling_full_d23.csv and noise_rate_sampling_full_d21.csv respectively.
DOI: 10.5281/zenodo.11621878
title: Data supporting "A real-time, scalable, fast and resource-efficient decoder for a quantum computer"

description: Data includes the circuits (stim_circuits.zip) used to create samples to benchmark CC decoder across different noise rates and code sizes. The resulting accuracy and cycle data is in fpga_accuracy_data.csv. The memory footprint (in KB) of the algorithm for different code sizes is in fpga_memory_data.csv.

Weights of syndromes for different noise rates for both phenomenological and circuit-level noise at distance d=23 and d=21 are in noise_rate_sampling_full_d23.csv and noise_rate_sampling_full_d21.csv respectively.
DOI: 10.5281/zenodo.14411549
title: Volumetric absorptive microsampling meets electromembrane extraction for the first time: Case example of doxorubicin and its metabolite in whole blood samples
DOI: 10.5281/zenodo.14411853
title: Modeling the relevant conformations of the mitochondrial ADP-ATP Carrier in complex with the ligands. Insight into the protein-ligand interactions.

description: Six representative snapshots (PDB format) of the two replicas of the MD simulations of the ATP/ADP mitochondrial carrier in the c-state (ADP-bound) and in the m-state (ATP-bound):

frame_md1af3_cstate_ADP; AlphaFold 3 model of the c-state in complex with ADP 

frame_md1docking_cstate_ADP; AlphaFold 2 model of the c-state in complex with ADP obtained by docking using GNINA

frame_md1docking_mstate_ATP; ColabFold model of the m-state in complex with ATP obtained by docking using GNINA

frame_md2af3_cstate_ADP; AlphaFold 3 model of the c-state in complex with ADP 

frame_md2docking_cstate_ADP; AlphaFold 2 model of the c-state in complex with ADP obtained by docking using GNINA

frame_md2docking_mstate_ATP; ColabFold model of the m-state in complex with ATP obtained by docking using GNINA
DOI: 10.5281/zenodo.14411854
title: Modeling the relevant conformations of the mitochondrial ADP-ATP Carrier in complex with the ligands. Insight into the protein-ligand interactions.

description: Six representative snapshots (PDB format) of the two replicas of the MD simulations of the ATP/ADP mitochondrial carrier in the c-state (ADP-bound) and in the m-state (ATP-bound):

frame_md1af3_cstate_ADP; AlphaFold 3 model of the c-state in complex with ADP 

frame_md1docking_cstate_ADP; AlphaFold 2 model of the c-state in complex with ADP obtained by docking using GNINA

frame_md1docking_mstate_ATP; ColabFold model of the m-state in complex with ATP obtained by docking using GNINA

frame_md2af3_cstate_ADP; AlphaFold 3 model of the c-state in complex with ADP 

frame_md2docking_cstate_ADP; AlphaFold 2 model of the c-state in complex with ADP obtained by docking using GNINA

frame_md2docking_mstate_ATP; ColabFold model of the m-state in complex with ATP obtained by docking using GNINA
DOI: 10.15468/dl.ftv6wz
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthocybium solandri (Cuvier, 1832)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 27 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031428-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ng7jhr
title: Occurrence Download

description: A dataset containing 1029266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "PublishingOrg is c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f",
 "TaxonKey is Orthoptera",
 "Year 2010-2024"
 ]
}

 The dataset includes 1029266 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031421-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hsx4s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cybium solandri Cuvier, 1832",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031429-241126133413365/datasets/export for details.
DOI: 10.15468/dl.8yn9x2
title: Occurrence Download

description: A dataset containing 1347295 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((4.64107 51.8091,4.99185 51.8091,4.99185 51.93286,4.64107 51.93286,4.64107 51.8091))",
 "Geometry POLYGON((4.6051 51.80327,4.97396 51.80327,4.97396 51.9194,4.6051 51.9194,4.6051 51.80327))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1347295 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031419-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28014794.v1
title: Data set for "Estimated Hydraulic Characteristics and the Entrainment of Fish Eggs and Larvae at a Pumped River-water Intake"

description: This is the data for the publication of “Estimated Hydraulic Characteristics and the Entrainment of Fish Eggs and Larvae at a Pumped River-water Intake” on Water Resources Research.
DOI: 10.15468/dl.gxg376
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthosepion lycidas (Gray, 1849)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 43 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031430-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27024340
title: Data from "Metastable state preceding shear zone instability: Implications for earthquake-accelerated landslides and dynamic triggering"

description: Dataset for paper "Metastable state preceding shear zone instability: Implications for earthquake-accelerated landslides and dynamic triggering"
DOI: 10.6084/m9.figshare.27024340.v4
title: Metastable state preceding shear zone instability: Implications for earthquake-accelerated landslides and dynamic triggering

description: Dataset for paper "Metastable state preceding shear zone instability: Implications for earthquake-accelerated landslides and dynamic triggering"
DOI: 10.15468/dl.f2bq8y
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Mexico)",
 "TaxonKey is Rhincodon Smith, 1829",
 "Year 2005-2015"
 ]
}

 The dataset includes 197 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031432-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scqubu
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sepia lycidas Gray, 1849",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031433-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28015106
title: Data set of the paper "Effects of muscle size and sex on the reproducibility and reliability of extended field of view ultrasound-based lower limb muscles cross-sectional area measurements"

description: The data set of the paper "Effects of muscle size and sex on the reproducibility and reliability of extended field of view ultrasound-based lower limb muscles cross-sectional area measurements"
DOI: 10.6084/m9.figshare.28015106.v1
title: Data set of the paper "Effects of muscle size and sex on the reproducibility and reliability of extended field of view ultrasound-based lower limb muscles cross-sectional area measurements"

description: The data set of the paper "Effects of muscle size and sex on the reproducibility and reliability of extended field of view ultrasound-based lower limb muscles cross-sectional area measurements"
DOI: 10.15468/dl.nqqr63
title: Occurrence Download

description: A dataset containing 560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coryphaenoides cinereus (Gilbert, 1896)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 560 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031434-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7hyx29
title: Occurrence Download

description: A dataset containing 111560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balaenoptera physalus (Linnaeus, 1758)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 111560 records from 424 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031401-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14205071
title: AI4PROFHEALTH - Automatic Occupations Gazetteer and Occupations Co-occurrence with Clinical Concepts

description: This dataset comprises an occupations gazetteer generated with automatically extracted terminology from the Mesinesp2 corpus, a manually annotated corpus in which domain experts have labeled a set of scientific literature, clinical trials, and patent abstracts, as well as clinical case reports. In addition, this dataset also includes the co-occurrences among occupations, and of professions with other clinical concepts that have been extracted automatically, including diseases, procedures, symptoms, species, drugs, and neoplasia morphologies. 


The repository contains a .zip file for all the results obtained from Mesinesp2 and another for the clinical cases, both containing a .tsv file for the professions gazetteer, one for the professions internal co-occurrence, and one for the professions co-occurrence with other semantic classes:




mesinesp2_profession_gazetteer_and_cooccurrence.zip (Mesinesp2)



mesinesp2_professions_gazetteer.tsv

mesinesp2_professions_cooccurrences.tsv

mesinesp2_professions_cooccurrences_with_other_classes.tsv






clinicalcases_profession_gazetteer_and_cooccurrence.zip (clinical cases)



clinicalcases_professions_gazetteer.tsv

clinicalcases_professions_cooccurrences.tsv

clinicalcases_professions_cooccurrences_with_other_classes.tsv




The gazetteer is divided into two columns, one with the name of the extracted terms and the other one with their total count.

The professions co-occurrences .tsv file is divided into three columns. The first two columns contain the professions that co-occur, and the third column, named "count," indicates the number of co-occurrences calculated at the document level for each pair of detected entities. The professions co-occurrences with other classes .tsv file is structured in a similar manner, where the first column contains professions, the second one the clinical concepts that they co-occur with, the third one the counts of co-occurrences, and the fourth one the class to which the clinical concept belongs.

License

This work is licensed under a Creative Commons Attribution 4.0 International License.

Contact

If you have any questions or suggestions, please contact us at:

- Sergi Marsol Torrent (<sergi [dot] marsol [at] bsc [dot] es>)- Martin Krallinger (<krallinger [dot] martin [at] gmail [dot] com>)

Additional resources and corpora

If you are interested, you might want to check out these corpora and resources:



MESINESP-2 (Corpus of manually indexed records with DeCS /MeSH terms comprising scientific literature abstracts, clinical trials, and patent abstracts, different document collection)

MEDDOPROF corpus 

Annotation Guidelines


Acknowledgements

This resource been funded by the Spanish National Proyectos I+D+i 2020 AI4ProfHealth project PID2020-119266RA-I00 (PID2020-119266RA-I0/AEI/10.13039/501100011033).
DOI: 10.5281/zenodo.14205072
title: AI4PROFHEALTH - Automatic Occupations Gazetteer and Occupations Co-occurrence with Clinical Concepts

description: This dataset comprises an occupations gazetteer generated with automatically extracted terminology from the Mesinesp2 corpus, a manually annotated corpus in which domain experts have labeled a set of scientific literature, clinical trials, and patent abstracts, as well as clinical case reports. In addition, this dataset also includes the co-occurrences among occupations, and of professions with other clinical concepts that have been extracted automatically, including diseases, procedures, symptoms, species, drugs, and neoplasia morphologies. 

The repository contains a .zip file for all the results obtained from Mesinesp2, containing a .tsv file for the professions gazetteer, one for the professions internal co-occurrence, and one for the professions co-occurrence with other semantic classes:



mesinesp2_profession_gazetteer_and_cooccurrence.zip (Mesinesp2)



mesinesp2_professions_gazetteer.tsv

mesinesp2_professions_cooccurrences.tsv

mesinesp2_professions_cooccurrences_with_other_classes.tsv




The gazetteer is divided into two columns, one with the name of the extracted terms and the other one with their total count.

The professions co-occurrences .tsv file is divided into three columns. The first two columns contain the professions that co-occur, and the third column, named "count," indicates the number of co-occurrences calculated at the document level for each pair of detected entities. The professions co-occurrences with other classes .tsv file is structured in a similar manner, where the first column contains professions, the second one the clinical concepts that they co-occur with, the third one the counts of co-occurrences, and the fourth one the class to which the clinical concept belongs.

License

This work is licensed under a Creative Commons Attribution 4.0 International License.

Contact

If you have any questions or suggestions, please contact us at:

- Sergi Marsol Torrent (<sergi [dot] marsol [at] bsc [dot] es>)- Martin Krallinger (<krallinger [dot] martin [at] gmail [dot] com>)

Additional resources and corpora

If you are interested, you might want to check out these corpora and resources:



MESINESP-2 (Corpus of manually indexed records with DeCS /MeSH terms comprising scientific literature abstracts, clinical trials, and patent abstracts, different document collection)

Annotation Guidelines


Acknowledgements

This resource been funded by the Spanish National Proyectos I+D+i 2020 AI4ProfHealth project PID2020-119266RA-I00 (PID2020-119266RA-I0/AEI/10.13039/501100011033).
DOI: 10.5281/zenodo.14412078
title: AI4PROFHEALTH - Automatic Occupations Gazetteer and Occupations Co-occurrence with Clinical Concepts

description: This dataset comprises an occupations gazetteer generated with automatically extracted terminology from the Mesinesp2 corpus, a manually annotated corpus in which domain experts have labeled a set of scientific literature, clinical trials, and patent abstracts, as well as clinical case reports. In addition, this dataset also includes the co-occurrences among occupations, and of professions with other clinical concepts that have been extracted automatically, including diseases, procedures, symptoms, species, drugs, and neoplasia morphologies. 


The repository contains a .zip file for all the results obtained from Mesinesp2 and another for the clinical cases, both containing a .tsv file for the professions gazetteer, one for the professions internal co-occurrence, and one for the professions co-occurrence with other semantic classes:




mesinesp2_profession_gazetteer_and_cooccurrence.zip (Mesinesp2)



mesinesp2_professions_gazetteer.tsv

mesinesp2_professions_cooccurrences.tsv

mesinesp2_professions_cooccurrences_with_other_classes.tsv






clinicalcases_profession_gazetteer_and_cooccurrence.zip (clinical cases)



clinicalcases_professions_gazetteer.tsv

clinicalcases_professions_cooccurrences.tsv

clinicalcases_professions_cooccurrences_with_other_classes.tsv




The gazetteer is divided into two columns, one with the name of the extracted terms and the other one with their total count.

The professions co-occurrences .tsv file is divided into three columns. The first two columns contain the professions that co-occur, and the third column, named "count," indicates the number of co-occurrences calculated at the document level for each pair of detected entities. The professions co-occurrences with other classes .tsv file is structured in a similar manner, where the first column contains professions, the second one the clinical concepts that they co-occur with, the third one the counts of co-occurrences, and the fourth one the class to which the clinical concept belongs.

License

This work is licensed under a Creative Commons Attribution 4.0 International License.

Contact

If you have any questions or suggestions, please contact us at:

- Sergi Marsol Torrent (<sergi [dot] marsol [at] bsc [dot] es>)- Martin Krallinger (<krallinger [dot] martin [at] gmail [dot] com>)

Additional resources and corpora

If you are interested, you might want to check out these corpora and resources:



MESINESP-2 (Corpus of manually indexed records with DeCS /MeSH terms comprising scientific literature abstracts, clinical trials, and patent abstracts, different document collection)

MEDDOPROF corpus 

Annotation Guidelines


Acknowledgements

This resource been funded by the Spanish National Proyectos I+D+i 2020 AI4ProfHealth project PID2020-119266RA-I00 (PID2020-119266RA-I0/AEI/10.13039/501100011033).
DOI: 10.15468/dl.wqw5cy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macrurus cinereus Gilbert, 1896",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031435-241126133413365/datasets/export for details.