cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8xhv88c7wt
title: Genome-wide screening in human kidney organoids identifies developmental and disease-related aspects of nephrogenesis

description: Human organoids allow the study of proliferation, lineage specification, and three-dimensional tissue development. Here, we present a genome-wide CRISPR screen in iPSC-derived kidney organoids. The combination of inducible genome editing, longitudinal sampling and endpoint sorting of tubular and stromal cells generated a complex, high-quality dataset uncovering a broad spectrum of insightful biology from early development to ‘adult’ epithelial morphogenesis. Our functional dataset allows improving mesoderm induction by ROCK inhibition, contains monogenetic and complex trait kidney disease genes, confirms two additional CAKUT genes (CCDC170 and MYH7B), and provides a large candidate list of ciliopathy-related genes. Finally, the identification of a cis-inhibitory effect of Jagged1 controlling epithelial proliferation shows how mosaic knockouts in pooled CRISPR screening can discover ways of communication between heterogeneous cell populations in complex tissues. Collectively, these data serve both as a rich resource for the kidney community and as a benchmark for future iPSC-derived organoid CRISPR screens.
DOI: 10.17632/b7y2vddnbd
title: Data for the Design and construction of a thin-film drying channel equipment and Modeling the drying kinetics of nanofiltered whey

description: This data set contains the files used for the construction and control of a drying tunnel at laboratory scale. Likewise, it contains the necessary scripts to adjust the curves of drying in the model of the characteristic drying curve (CDC) and the obtaining of the parameters with their respective confidence intervals by using Monte Carlo simulation
DOI: 10.17632/rtd8cx7zc3
title: De novo transcriptome assemblies of three Darevskia lizard species

description: Data provides information about the first assembled transcriptomes of Darevskia lizards.
DOI: 10.17632/y2ps88bh56
title: Dataset for Systematic Literature Review on Process Mining

description: This dataset contains detailed information from a Systematic Literature Review (SLR) on Process Mining, including bibliographic data, methodologies, and key findings from selected research papers.

This study presents a Systematic Literature Review (SLR) on Process Mining, aiming to analyze the evolution, trends, and challenges in the field. By applying a structured search strategy across multiple digital libraries, we identify, classify, and synthesize relevant research works. The study provides insights into methodologies, application domains, and emerging directions in process mining, offering a comprehensive overview for researchers and practitioners.

the repository contains the following files:

01_Target_String_Library.txt: lists the search strings used in digital libraries, ensuring a systematic and reproducible literature search.

02_Search_Query_dataset.xlsm: provides a comprehensive record of the studies retrieved from digital libraries, detailing which articles were selected for analysis and which were excluded based on predefined criteria. This dataset ensures transparency in the selection process and facilitates reproducibility in systematic literature reviews.

03_Groups_of_Primary_Studies.xlsm: categorizes independent studies in process mining, organizing them based on their authorship, title, year, and publication source. This classification ensures a structured overview of relevant research, facilitating the evaluation and comparison of contributions within the field.

04_Answer_QA.xlsm: presents a structured assessment of the methodological quality of selected studies, evaluating key criteria to determine their rigor, reliability, and applicability in process mining research.
DOI: 10.6084/m9.figshare.11804280.v1
title: Ondine’s curse: the origin of the myth

description: ABSTRACT Central alveolar hypoventilation syndrome has been known for decades as Ondine’s curse. It was named as such after a German myth. Although most of the stories resemble one another, word of mouth has led to misinterpretation of this tale among the medical community. The present paper reviews the original narrative, its characters, and how it is linked to the most relevant aspects of the disease.
DOI: 10.6084/m9.figshare.28297619.v2
title: Search Strategy and Data Exctraction Information.docx

description: <b>Assessment of cross-cultural adaptations and patient-reported outcome measures relevant to shoulder disorders in Turkish: A systematic review using the COSMIN methodology.</b>
DOI: 10.17632/t2tkykvwb4
title: Protein characterization, purification, and sequence data for plant made catfish interleukin 22

description: This is a compilation of western blots and sequencing data from the optimization of production of catfish interleukin 22 using the transient agrobacterium infiltration method in nicotiana benthamiana plants. Each piece of data has a legend and the data is published in a data in brief article.
DOI: 10.6084/m9.figshare.13547186.v1
title: A More Standardized Method for Imaging and Measuring Drosophila Thorax Length Using ImageJ

description: Thorax measurements are important metrics of <i>Drosophila</i> fitness and are often correlated with key life history traits such as lifespan and fecundity. Therefore, thorax length is a widely used measure in studies of genetic variation and plasticity in response to environmental alterations. However, the lack of fixed landmarks means that thorax measurements can sometimes be inconsistent and highly variable. Here we outline a dorsal bristle-guided method of thorax measurements, which we could use to draw a reliable and repeatable line from the thorax scutellum to the anterior thorax edge. We analyzed and compared this bristle-guided marker method to a non-landmark based thorax measurement, in a set of measures of female and male <i>D. melanogaster</i>. We found that the bristle-guided method exhibited significantly less variation between technical replicates than did the non-landmark based measure.
DOI: 10.6084/m9.figshare.6194261.v1
title: Supplementary Material for: Genome-Wide Association Study and Transcriptome Analysis Provide New Insights into the White/Red Earlobe Color Formation in Chicken

description: <b><i>Background/Aims:</i></b> Earlobe color is a typical external trait in chicken. There are some previous studies showing that the chicken white/red earlobe color is a polygenic and sex-linked trait in some breeds, but its molecular genetic and histological mechanisms still remain unclear. <b><i>Methods:</i></b> We herein utilized histological section, genome-wide association study (GWAS) and RNA-seq, further to investigate the potential histological and molecular genetic mechanisms of white/red earlobe formation in Qiangyuan Partridge chicken (QYP). <b><i>Results:</i></b> through histological section analysis, we found the dermal papillary layer of red earlobes had many more blood vessels than that of white earlobes. And we identified a total of 44 SNPs from Chromosome 1, 2, 3, 4, 9, 10, 11, 13, 19, 20, 23 and Z, that was significantly associated with the chicken white/red earlobe color from GWAS, along with 73 significantly associated genes obtained (e.g., <i>PIK3CB, B4GALT1</i> and <i>TP63</i>), supporting the fact that the white/red earlobe color was also polygenic and sex-linked in QYP. Importantly, <i>PIK3CB</i> and <i>B4GALT1</i> are both involved in the biological process of angiogenesis, which may directly give rise to the chicken white earlobe formation through regulating blood vessel density in chicken earlobe. Additionally, through contrast of RNA-seq profiles between white earlobe skins and red earlobe skins, we further identified <i>TP63</i> and <i>CDH1</i> differentially expressed. Combined with the existing knowledge of TP63 in epithelial development and tumor angiogenesis, we propose that down-regulated <i>TP63</i> in white earlobes may play roles in thickening the skin and decreasing the vessel numbers in dermal papillary layer, thereby contributing to the white earlobe formation via paling the redness of the skin in QYP, but the specific mechanism remains to be further clarified. <b><i>Conclusion:</i></b> our findings advance the existing understanding of the white earlobe formation, as well as provide new clues to understand the molecular mechanism of chicken white/red earlobe color formation.
DOI: 10.17632/hx5mp695tv
title: Datasets for Occupancy Profiles in Student Housing for Occupant Behavior Studies and Application in Building Energy Simulation

description: A geo-fencing app was designed and installed on the cellphones of 41 volunteer students living in student housing buildings on Clarkson University’s campus (Potsdam NY, USA). Occupants’ entering and exiting activities were recorded minutely from February 4 to May 10, 2018, with days in the semester breaks (February 21-25 and March 16-25) excluded. Five participants were excluded due to missing data. Recorded events were sorted out for each individual by the date and time of day considering 1 for ‘entered’ events and 0 for ‘exited’ events to show the probability of presence at each time of day. Accounting for excluded days (234 days with errors and uncertainties), 1,096 daily occupancy schedules were retained in the dataset. Two methods were used to analyze the dataset and derive weekday and weekend occupancy schedules. A simple averaging method and K-means clustering techniques were performed. We provide the input datasets that were used for analysis as well as the outputs of both methods. Occupancy schedules are presented separately for each day of a week, weekdays, and weekend days.
DOI: 10.15468/dl.gw84y2
title: Occurrence Download

description: A dataset containing 1914991 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "Year is 1972"
 ]
}

 The dataset includes 1914991 records from 1740 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009259-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/nx55jj48rx
title: Dataset for the article "Room and High Temperature Tensile Properties of Inconel 718 Parts Processed by Laser Powder Bed Fusion and Annealed at 1050 °C"

description: These data are published as a part of the paper: Room and High Temperature Tensile Properties of Inconel 718 Parts Processed by Laser Powder Bed Fusion and Annealed at 1050 °C. The structure and organisation of the data are outlined in the README and individual files.
DOI: 10.17632/nx55jj48rx.2
title: Dataset for the article "Room and High Temperature Tensile Properties of Inconel 718 Parts Processed by Laser Powder Bed Fusion and Annealed at 1050 °C"

description: These data are published as a part of the paper: Room and High Temperature Tensile Properties of Inconel 718 Parts Processed by Laser Powder Bed Fusion and Annealed at 1050 °C. The structure and organisation of the data are outlined in the README and individual files.
DOI: 10.17632/bpc5shjkkv
title: Dataset for 'A Del(5Ncf1-Fkbp6) mouse model of Williams syndrome shows coronary, aortic and cerebral vascular abnormalities with behavioral deficits'

description: This dataset contains the underlying data of the paper 'A Del(5Ncf1-Fkbp6) mouse model of Williams syndrome shows coronary, aortic and cerebral vascular abnormalities with behavioral deficits' as published in PNAS Nexus.

Williams syndrome is a developmental disorder caused by a microdeletion entailing the loss of a single copy of 25-27 genes on chromosome 7q11.23. Patients suffer from cardiovascular and neuropsychological symptoms. Structural abnormalities of the cardiovascular system in Williams syndrome have been attributed to the hemizygous loss of the elastin (ELN) gene. In contrast, the neuropsychological consequences of Williams syndrome, including sensorimotor deficits, hypersociability and cognitive impairments, have been mainly attributed to altered expression of transcription factors like LIMK1, GTF2I and GTF2IRD1, while the potential impact of altered cerebrovascular function has been largely overlooked. To study the relationship between Williams syndrome mutations and vascularization of both the heart and brain, we generated a mouse model carrying a relatively long microdeletion Del(5Ncf1-Fkbp6). Heterozygous Del(5Ncf1-Fkbp6) mice had elongated and tortuous aortas but, unlike Eln haploinsufficient mice, showed no signs of structural cardiac hypertrophy. Remarkably, we also observed structural abnormalities in coronary and brain vessels, including disorganized extracellular matrices. Importantly, the mutant mice faithfully replicated both cardiovascular and neuropsychological symptoms observed in patients. The phenotype was even more comprehensive than in former models, with structure-function correlations evident in aberrant auditory and motor behaviors resembling those in patients with Williams syndrome. Together, our findings suggest that not only cardiovascular but also neuropsychological symptoms in Williams syndrome may be driven in part by vascular abnormalities affecting both heart and brain.
DOI: 10.17632/bpc5shjkkv.1
title: Dataset for 'A Del(5Ncf1-Fkbp6) mouse model of Williams syndrome shows coronary, aortic and cerebral vascular abnormalities with behavioral deficits'

description: This dataset contains the underlying data of the paper 'A Del(5Ncf1-Fkbp6) mouse model of Williams syndrome shows coronary, aortic and cerebral vascular abnormalities with behavioral deficits' as published in PNAS Nexus.

Williams syndrome is a developmental disorder caused by a microdeletion entailing the loss of a single copy of 25-27 genes on chromosome 7q11.23. Patients suffer from cardiovascular and neuropsychological symptoms. Structural abnormalities of the cardiovascular system in Williams syndrome have been attributed to the hemizygous loss of the elastin (ELN) gene. In contrast, the neuropsychological consequences of Williams syndrome, including sensorimotor deficits, hypersociability and cognitive impairments, have been mainly attributed to altered expression of transcription factors like LIMK1, GTF2I and GTF2IRD1, while the potential impact of altered cerebrovascular function has been largely overlooked. To study the relationship between Williams syndrome mutations and vascularization of both the heart and brain, we generated a mouse model carrying a relatively long microdeletion Del(5Ncf1-Fkbp6). Heterozygous Del(5Ncf1-Fkbp6) mice had elongated and tortuous aortas but, unlike Eln haploinsufficient mice, showed no signs of structural cardiac hypertrophy. Remarkably, we also observed structural abnormalities in coronary and brain vessels, including disorganized extracellular matrices. Importantly, the mutant mice faithfully replicated both cardiovascular and neuropsychological symptoms observed in patients. The phenotype was even more comprehensive than in former models, with structure-function correlations evident in aberrant auditory and motor behaviors resembling those in patients with Williams syndrome. Together, our findings suggest that not only cardiovascular but also neuropsychological symptoms in Williams syndrome may be driven in part by vascular abnormalities affecting both heart and brain.
DOI: 10.17632/m7kxcdhv4b
title: Development of an Osteoporosis Diagnosis Model Based on Disulfidoptosis-related Genes and Analysis of Immune Infiltration Characteristics

description: Supplementary material for the study "Development of an Osteoporosis Diagnosis Model Based on Disulfidoptosis-related Genes and Analysis of Immune Infiltration Characteristics"
DOI: 10.15468/dl.uff5aj
title: Occurrence Download

description: A dataset containing 686 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Equus ferus przewalskii"
 ]
}

 The dataset includes 686 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017243-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/m7kxcdhv4b.1
title: Development of an Osteoporosis Diagnosis Model Based on Disulfidoptosis-related Genes and Analysis of Immune Infiltration Characteristics

description: Supplementary material for the study "Development of an Osteoporosis Diagnosis Model Based on Disulfidoptosis-related Genes and Analysis of Immune Infiltration Characteristics"
DOI: 10.15468/dl.efqev6
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Petrocodon hispidus"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017245-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uy56th
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oerstedia nigra",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017244-251025141854904/datasets/export for details.
DOI: 10.17632/z73vsx3ryg
title: WS-DREAM

description: The WSDream dataset is a large-scale collection widely used for Quality of Service (QoS) prediction tasks. It contains 1,974,675 QoS records, representing interactions between 339 users and 5,825 Web services. The dataset is structured as two user-service matrices, where rows and columns correspond to users and services, respectively, with each entry in the matrix representing response time (RT) or throughput (TP). In addition, WSDream includes geographical information related to users and services, such as country and Autonomous System (AS) details. This dataset provides a valuable resource for developing and evaluating QoS prediction models.
DOI: 10.17632/z73vsx3ryg.1
title: WS-DREAM

description: The WSDream dataset is a large-scale collection widely used for Quality of Service (QoS) prediction tasks. It contains 1,974,675 QoS records, representing interactions between 339 users and 5,825 Web services. The dataset is structured as two user-service matrices, where rows and columns correspond to users and services, respectively, with each entry in the matrix representing response time (RT) or throughput (TP). In addition, WSDream includes geographical information related to users and services, such as country and Autonomous System (AS) details. This dataset provides a valuable resource for developing and evaluating QoS prediction models.
DOI: 10.17632/v2txvny9mc.1
title: FlowCode examples

description: FlowCode example data for testing debarcoder and analysis pipeline
DOI: 10.15468/dl.etha5j
title: Occurrence Download

description: A dataset containing 117771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tilia platyphyllos",
 "HasCoordinate is true"
 ]
}

 The dataset includes 117771 records from 1314 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017198-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/zgcy5ysy7n
title: UAV-Road Marking

description: Road marking image data captured by drones
DOI: 10.17632/zgcy5ysy7n.1
title: UAV-Road Marking

description: Road marking image data captured by drones
DOI: 10.15468/dl.c4h3cu
title: Occurrence Download

description: A dataset containing 3026 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Persicaria debilis, Persicaria debilis, Persicaria dubia)",
 "DecimalLatitude is greater than or equal to 0"
 ]
}

 The dataset includes 3026 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017247-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4urt5
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Petrocodon jasminiflorus"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017248-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttgvmz
title: Occurrence Download

description: A dataset containing 2798904139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1900-2023"
 ]
}

 The dataset includes 2798904139 records from 58679 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001451-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/w2h-zc1-k65
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w57-4t4-fy4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1jf-dxq-1wk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7ql-107-vlx
title: Pseudobelus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dww-yxt-cv1
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rdr-yxk-b95
title: Articularia lineata (Brady, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wkg-cxd-p8j
title: †Bitubulogenerina Howe, 1934

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j59-pva-cb1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/plj-xhs-2m3
title: †Polystomellina discorbinoides (Yabe & Hanzawa, 1923)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t6k-rm2-83z
title: Martinottiella primaeva (Cushman, 1913)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/31s-0st-x6w
title: Amphistegina radiata (Fichtel & Moll, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t3z-zn5-lbv
title: Neolissoceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h0q-pw6-2na
title: Spirillina vivipara Ehrenberg, 1843

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0rx-272-yb4
title: Osangularia bengalensis (Schwager, 1866)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cfe-t7b-kmj
title: Barremites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8lj-l0y-j8r
title: Quinqueloculina akneriana d'Orbigny, 1846

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q8h-yft-bjk
title: Uvigerina schwageri Brady, 1884

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.