cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14342960.v1
title: Metagenome assembled genomes co_7-Bin_55_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342963
title: Metagenome assembled genomes co_8-Bin_33_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342963.v1
title: Metagenome assembled genomes co_8-Bin_33_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342966.v1
title: Metagenome assembled genomes co_5-Bin_12_2.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342966
title: Metagenome assembled genomes co_5-Bin_12_2.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342969
title: Metagenome assembled genomes co_7-Bin_17_2.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342969.v1
title: Metagenome assembled genomes co_7-Bin_17_2.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342972
title: Metagenome assembled genomes co_1-Bin_39_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342972.v1
title: Metagenome assembled genomes co_1-Bin_39_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342975
title: Metagenome assembled genomes co_3-Bin_18_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342975.v1
title: Metagenome assembled genomes co_3-Bin_18_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342978.v1
title: Metagenome assembled genomes co_1-Bin_29_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342978
title: Metagenome assembled genomes co_1-Bin_29_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342981
title: Metagenome assembled genomes co_3-Bin_34_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342981.v1
title: Metagenome assembled genomes co_3-Bin_34_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342984
title: Metagenome assembled genomes co_3-Bin_9_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342984.v1
title: Metagenome assembled genomes co_3-Bin_9_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342987
title: Metagenome assembled genomes co_1-Bin_5_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342987.v1
title: Metagenome assembled genomes co_1-Bin_5_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342990
title: Metagenome assembled genomes co_2-Bin_33_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342990.v1
title: Metagenome assembled genomes co_2-Bin_33_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342993
title: Metagenome assembled genomes co_6-Bin_20_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342993.v1
title: Metagenome assembled genomes co_6-Bin_20_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.15468/2ekm99
title: Night stalkers from above: A monograph of Toxicodryas tree snakes (Squamata Colubridae) with descriptions of two new cryptic species from Central Africa

description: This dataset contains the digitized treatments in Plazi based on the original journal article Greenbaum, Eli, Allen, Kaitlin E., Vaughan, Eugene R., Pauwels, Olivier S. G., Wallach, Van, Kusamba, Chifundera, Muninga, Wandege M., Aris- Tote, Mwenebatu M., Mali, Franck M. M., Badjedjea, Gabriel, Penner, Johannes, Rödel, Mark-Oliver, Rivera, Jacqueline, Sterkhova, Viktoria, Johnson, Grant, Tapondjou, Walter P., Brown, Rafe M. (2021): Night stalkers from above: A monograph of Toxicodryas tree snakes (Squamata Colubridae) with descriptions of two new cryptic species from Central Africa. Zootaxa 4965 (1): 1-44, DOI: https://doi.org/10.11646/zootaxa.4965.1.1
DOI: 10.6084/m9.figshare.14342996
title: Metagenome assembled genomes co_3-Bin_14_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342996.v1
title: Metagenome assembled genomes co_3-Bin_14_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.13210646
title: Results of the social forces model for crowd simulation

description: This dataset was produced by our implementation of the social forces model, developed by Dirk Helbing and Péter Molnar in 1995. We have implemented the model in Python 3.8 and with it, we reproduced the experiments described by Feliciani and Nishinari in 2016 to explore the process of lane formation. <br>Our simulator produces an output file in which each line contains positions, speeds, and social forces that act on each agent, at each iteration of the model. To reproduce the experimental scenarios mentioned, we did four simulations of the four scenarios, each with 54 agents. Each simulation has 3500 iterations. The resulting data file has 54 x 3500 x 16 rows and 19 columns. To this database, in post-processing, we added another four columns containing information about the phase, the group, the simulation identification number, and the simulated scenario.
DOI: 10.6084/m9.figshare.14342717.v1
title: Metagenome assembled genomes co_1-Bin_26_2.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.13210646.v1
title: Results of the social forces model for crowd simulation

description: This dataset was produced by our implementation of the social forces model, developed by Dirk Helbing and Péter Molnar in 1995. We have implemented the model in Python 3.8 and with it, we reproduced the experiments described by Feliciani and Nishinari in 2016 to explore the process of lane formation. <br>Our simulator produces an output file in which each line contains positions, speeds, and social forces that act on each agent, at each iteration of the model. To reproduce the experimental scenarios mentioned, we did four simulations of the four scenarios, each with 54 agents. Each simulation has 3500 iterations. The resulting data file has 54 x 3500 x 16 rows and 19 columns. To this database, in post-processing, we added another four columns containing information about the phase, the group, the simulation identification number, and the simulated scenario.
DOI: 10.6084/m9.figshare.14342714.v1
title: Metagenome assembled genomes co_2-Bin_28_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342999
title: Metagenome assembled genomes co_3-Bin_31_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342999.v1
title: Metagenome assembled genomes co_3-Bin_31_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.5281/zenodo.4741202
title: Screening method for barcode data replicates

description: Replicate similarity was assessed using the Morisita-Horn similarity index, with a value of 0 indicating the lowest possible similarity between the samples and a value of 1 indicating the highest possible similarity between them. Replicates with a Morisita-Horn value of &lt;0.75 were both excluded to decrease confounding variables and inconsistent sampling. *Data not available or insufficient reads (&lt;20,000), ***Sufficient reads to keep in analysis (&gt;20,000), ##Viral load data not available.
DOI: 10.5281/zenodo.4741201
title: Screening method for barcode data replicates

description: Replicate similarity was assessed using the Morisita-Horn similarity index, with a value of 0 indicating the lowest possible similarity between the samples and a value of 1 indicating the highest possible similarity between them. Replicates with a Morisita-Horn value of &lt;0.75 were both excluded to decrease confounding variables and inconsistent sampling. *Data not available or insufficient reads (&lt;20,000), ***Sufficient reads to keep in analysis (&gt;20,000), ##Viral load data not available.
DOI: 10.25919/cv2a-jt52
title: Parkes observations for project PX500 semester 2021APRS_01

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.18739/a2js9h865
title: Profiles of temperature, salinity, dissolved oxygen, and fluorecence from Hudson Strait from August 26, 2008

description: A hydrographic section across Hudson Strait was occupied on August 26, 2008 by Research Vessel (R/V) Knorr. Seven profiles of temperature, salinity, dissolved oxygen, and fluorescence were collected between Big Island and Wales Island. The profiles were collected with a Seabird 9 Conductivity-Temperature-Depth (CTD). The profiles were manually examined and are provided as 1-meter (m) bin averages. The purpose of the cruise was to recover four moorings deployed in the Strait to capture a year-long time series of the inflow and outflow. Hudson Strait is the main pathway of heat, mass, and freshwater exchange between Hudson Bay and the Arctic and North Atlantic Oceans. Hudson Strait inflow affects the physical and biogeochemical cycles and ecosystems of Hudson Bay.
DOI: 10.18739/a2f18sg3t
title: Moored velocity measurements in Hudson Strait from August 2008 to September 2009

description: Four moorings were deployed across Hudson Strait between Big Island and Wales Island from August 2008 to September 2009 to map the seasonal variability in properties and transports of the Strait. Hudson Strait is the main pathway of heat, mass, and freshwater exchange between Hudson Bay and the Arctic and North Atlantic Oceans. Hudson Strait inflow affects the physical and biogeochemical cycles and ecosystems of Hudson Bay. One mooring was deployed near the southern coast to capture the outflow. Three moorings were deployed on the northern side to capture the inflow. Two moorings were instrumented with Aquadopps, providing point velocity measurements of the deep currents, and two moorings were instrumented with Acoustic Doppler Current Profilers, providing profiles of the surface currents. The current meter data were processed according to their manufacturer specifications; each record was manually examined to remove obviously spurious data.
DOI: 10.18739/a29882p0j
title: Profiles of temperature, salinity, and beam transmission, and bathymetry data, from Hudson Strait from September 25-26, 2009

description: A hydrographic section across Hudson Strait was occupied over September 25-26, 2009 by Research Vessel (R/V) Knorr. Twelve profiles of temperature, salinity, and beam transmission were collected between Big Island and Wales Island. The profiles were collected with a Seabird 9 Conductivity-Temperature-Depth (CTD). The profiles were manually examined and are provided as 1-meter (m) bin averages. Also provided are bathymetry data collected by R/V Knorr's Knudsen depth sounder. The purpose of the cruise was to recover four moorings deployed in the Strait to capture a year-long time series of the inflow and outflow. Hudson Strait is the main pathway of heat, mass, and freshwater exchange between Hudson Bay and the Arctic and North Atlantic Oceans. Hudson Strait inflow affects the physical and biogeochemical cycles and ecosystems of Hudson Bay.
DOI: 10.6084/m9.figshare.14343002
title: Metagenome assembled genomes co_5-Bin_15_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14343002.v1
title: Metagenome assembled genomes co_5-Bin_15_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342780.v1
title: Metagenome assembled genomes co_3-Bin_40_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342780
title: Metagenome assembled genomes co_3-Bin_40_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342792.v1
title: Metagenome assembled genomes co_1-Bin_6_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342792
title: Metagenome assembled genomes co_1-Bin_6_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342795
title: Metagenome assembled genomes co_7-Bin_8_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.
DOI: 10.6084/m9.figshare.14342795.v1
title: Metagenome assembled genomes co_7-Bin_8_1.fa

description: Co-assemblies were binned with CONCOCT within anvi’o v5.1 by clustering scaffolds 2500 bp or longer into metagenome assembled genomes (MAGs) and manually refining them within the anvi’o platform. Furthermore, dRep v2.3.2 was used to dereplicate MAGs and obtain representative genomes with flags ‘-comp 50 -con 10’ and default values.