cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.d7a54z
title: Occurrence Download

description: A dataset containing 49583 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-02-21",
 "EventDate is less than or equal to 2025-03-23",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 49583 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016046-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15045386
title: Colabfoldv Database

description: This repository is intended to replicate only the `colabfold_search` functionality of the local ColabFold MSA generation pipeline, with an added protein database of `129944764` proteins tailored for viruses, especially phages. Please see `dataset_curation` for more details on how it was constructed.

 

For the full Colabfold functionality and up-to-date changes (and frankly anything outside of the use case presented below), please go to the [ColabFold repository](https://github.com/sokrypton/ColabFold).
DOI: 10.5281/zenodo.15045387
title: Colabfoldv Database

description: This repository is intended to replicate only the `colabfold_search` functionality of the local ColabFold MSA generation pipeline, with an added protein database of `129944764` proteins tailored for viruses, especially phages. Please see `dataset_curation` for more details on how it was constructed.

 

For the full Colabfold functionality and up-to-date changes (and frankly anything outside of the use case presented below), please go to the [ColabFold repository](https://github.com/sokrypton/ColabFold).
DOI: 10.15468/dl.dnswsn
title: Occurrence Download

description: A dataset containing 3496 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mustela nivalis Linnaeus, 1766",
 "Year 2015-2025"
 ]
}

 The dataset includes 3496 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016050-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9yxk67
title: Occurrence Download

description: A dataset containing 4021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-180 0,180 0,180 90,-180 90,-180 0))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "SamplingProtocol is one of (VES (Encuentro Visual), VES (Visual Encounter Survey), Parcela, Transecto, Transecto (Conteo visual y auditivo), PITFALL TRAP, Busqueda libre, Busqueda activa, Cuadrante, Auditivo y Visual)",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 4021 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016052-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avwveh
title: Occurrence Download

description: A dataset containing 16548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mustela nivalis Linnaeus, 1766"
 ]
}

 The dataset includes 16548 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016051-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xgk9sn
title: Occurrence Download

description: A dataset containing 19929 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Global compendium of Aedes aegypti occurrence"
 ]
}

 The dataset includes 19929 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016053-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20350/digitalcsic/17176
title: Additional file 1 of Three-dimensional environment sensitizes pancreatic cancer cells to the anti-proliferative effect of budesonide by reprogramming energy metabolism [Dataset]
DOI: 10.15468/dl.236bdf
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoplocampa testudinea (Klug, 1816)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 193 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016054-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.28mx2u
title: Occurrence Download

description: A dataset containing 568 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is one of (March, April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Anser cygnoides (Linnaeus, 1758)",
 "Year 2010-2010"
 ]
}

 The dataset includes 568 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016055-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kgzmbw
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is one of (January, February)",
 "OccurrenceStatus is Present",
 "TaxonKey is Anser cygnoides (Linnaeus, 1758)",
 "Year 2011-2011"
 ]
}

 The dataset includes 241 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016056-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xuc7fa
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Oreocharis cotinifolia (W.T.Wang) Mich.Möller & A.Weber"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016057-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g7q8jp
title: Occurrence Download

description: A dataset containing 12112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gracillaria syringella (Fabricius, 1794)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12112 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016058-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmfxut
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Uruguay",
 "OccurrenceStatus is Present",
 "TaxonKey is Cucurbita L."
 ]
}

 The dataset includes 40 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016059-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqtab2
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Abies ziyuanensis L.K.Fu & S.L.Mo"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016060-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28501976
title: MAGs_cattle

description: This study aims to characterise the microbiomes (nasal, oral and faecal) of Angus cattle in Australia. Samples were collected at different life stages (e.g. marking, weaning, before going to feedlot, during feedlot and at slaughter) to better characterise the diversity of the cattle microbiomes.
DOI: 10.5281/zenodo.15045660
title: Dataset to accompany manuscript "Assessment of Ionospheric TEC Performance among Multi-GNSS Dual-Frequency Combinations based on ROTI"

description: This dataset accompanies the manuscript "Assessment of Ionospheric TEC Performance among Multi-GNSS Dual-Frequency Combinations based on ROTI".  The data can be used to reproduce figures 1-8 in the main text. All files are in .mat format and are easily readable.  The abstract for the associated paper is as follows:

The dual-frequency combination of Global Navigation Satellite System (GNSS) signals plays a crucial role in ionospheric monitoring. At present, the majority of GNSS satellites emit multiple signals across various frequency bands. This offers the opportunity of estimating the ionospheric total electron content (TEC) from multiple dual-frequency combinations. The Rate of TEC index (ROTI) is calculated from dual-frequency phase measurements and it serves to quantify the dynamic variations in the slant TEC (STEC) by reducing datum deviations through differencing. This study assesses the ionospheric TEC performance among multiple dual-frequency combinations based on ROTI for the BeiDou Navigation Satellite System (BDS), Global Positioning System (GPS), and Galileo constellations. The results indicate that, ROTI is significantly correlated with the accuracy and quality of the TEC. The ROTI values derived from different dual-frequency combinations exhibit inherent differences, which remain consistent over a long-time scale. The intra-combination frequency difference and the performance of individual signals are factors that influence the TEC performance. The optimal dual-frequency combinations are L2I-L5P for BDS, L1C-L2W for GPS, and L1C-L8Q for Galileo, respectively. Moreover, ROTI could also be affected by the satellite orbit plane change, which is quantified by the solar beta angle of the satellite orbital plane.
DOI: 10.5281/zenodo.15045661
title: Dataset to accompany manuscript "Assessment of Ionospheric TEC Performance among Multi-GNSS Dual-Frequency Combinations based on ROTI"

description: This dataset accompanies the manuscript "Assessment of Ionospheric TEC Performance among Multi-GNSS Dual-Frequency Combinations based on ROTI".  The data can be used to reproduce figures 1-8 in the main text. All files are in .mat format and are easily readable.  The abstract for the associated paper is as follows:

The dual-frequency combination of Global Navigation Satellite System (GNSS) signals plays a crucial role in ionospheric monitoring. At present, the majority of GNSS satellites emit multiple signals across various frequency bands. This offers the opportunity of estimating the ionospheric total electron content (TEC) from multiple dual-frequency combinations. The Rate of TEC index (ROTI) is calculated from dual-frequency phase measurements and it serves to quantify the dynamic variations in the slant TEC (STEC) by reducing datum deviations through differencing. This study assesses the ionospheric TEC performance among multiple dual-frequency combinations based on ROTI for the BeiDou Navigation Satellite System (BDS), Global Positioning System (GPS), and Galileo constellations. The results indicate that, ROTI is significantly correlated with the accuracy and quality of the TEC. The ROTI values derived from different dual-frequency combinations exhibit inherent differences, which remain consistent over a long-time scale. The intra-combination frequency difference and the performance of individual signals are factors that influence the TEC performance. The optimal dual-frequency combinations are L2I-L5P for BDS, L1C-L2W for GPS, and L1C-L8Q for Galileo, respectively. Moreover, ROTI could also be affected by the satellite orbit plane change, which is quantified by the solar beta angle of the satellite orbital plane.
DOI: 10.25345/c5w669m92
title: MassIVE MSV000097368 - Malassezia furfur-host interaction positive
title: Host-Malassezia interaction study using the Galleria mellonella model: Positive ESI
DOI: 10.15468/dl.cu6jr3
title: Occurrence Download

description: A dataset containing 1029 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Russian Federation, Kazakhstan, Mongolia)",
 "TaxonKey is Accipiter badius (Gmelin, 1788)"
 ]
}

 The dataset includes 1029 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016061-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j9atqm
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craigia yunnanensis W.W.Sm. & W.E.Evans"
 ]
}

 The dataset includes 47 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016062-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rswfzu
title: Occurrence Download

description: A dataset containing 1201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemichroa crocea (Geoffroy, 1785)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1201 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016063-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amjhwm
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Parashorea chinensis WangHsie"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016064-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hw9wj6
title: Occurrence Download

description: A dataset containing 9273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Kazakhstan, Russian Federation, Mongolia)",
 "TaxonKey is Accipiter gentilis (Linnaeus, 1758)"
 ]
}

 The dataset includes 9273 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016065-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5p7bk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Parashorea chinensis Wang Hsie"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016066-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgyvj3
title: Occurrence Download

description: A dataset containing 2933 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Kazakhstan, Mongolia, Russian Federation)",
 "TaxonKey is Accipiter gularis (Temminck & Schlegel, 1844)"
 ]
}

 The dataset includes 2933 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016067-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gsk66t
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Cheirotonus battareli Pouillaude, 1913"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016068-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ds7jv
title: Occurrence Download

description: A dataset containing 33727 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Kazakhstan, Mongolia, Russian Federation)",
 "TaxonKey is Accipiter nisus (Linnaeus, 1758)"
 ]
}

 The dataset includes 33727 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016069-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tsmxfg
title: Occurrence Download

description: A dataset containing 858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Mongolia, Kazakhstan, Russian Federation)",
 "TaxonKey is Aegolius funereus (Linnaeus, 1758)"
 ]
}

 The dataset includes 858 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016071-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5fv6u
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Hopea hainanensis Merr. & Chun"
 ]
}

 The dataset includes 35 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016070-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive107328.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive107328.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0099173.10fu
title: SH0099173.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive107329.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive107329.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0099174.10fu
title: SH0099174.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive107330.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive107330.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0099175.10fu
title: SH0099175.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive107331.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.