cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.59knnf
title: Occurrence Download

description: A dataset containing 4165477 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The New York Botanical Garden Herbarium (NY)"
 ]
}

 The dataset includes 4165477 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076172-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.unqrtt
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Tamandua tetradactyla (Linnaeus, 1758)"
 ]
}

 The dataset includes 241 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069128-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oetimc
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Planktic foraminifera abundance of Hole 47-398A"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001313-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqarm4
title: Occurrence Download

description: A dataset containing 3743 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is SILENE-FAUNE-PACA - DREAL_PACA_-_N2000_-_Communauté_d_Agglomération_Pays_de_Martigues_2017_12_18"
 ]
}

 The dataset includes 3743 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232644-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4rejg6
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON Z((-98.21913 20.74521 0,-98.22604 20.71555 0,-98.21584 20.68006 0,-98.1844 20.65975 0,-98.13016 20.60254 0,-98.14753 20.5625 0,-98.12192 20.61366 0,-98.09871 20.60802 0,-98.10211 20.61636 0,-98.11046 20.61848 0,-98.12415 20.61641 0,-98.13371 20.61626 0,-98.13542 20.62001 0,-98.13934 20.62977 0,-98.14369 20.63442 0,-98.15022 20.6373 0,-98.15722 20.63916 0,-98.1651 20.64315 0,-98.16981 20.64742 0,-98.1764 20.65467 0,-98.18902 20.67261 0,-98.19531 20.67125 0,-98.20781 20.69448 0,-98.21445 20.70923 0,-98.21362 20.73209 0,-98.20586 20.74356 0,-98.20332 20.75342 0,-98.20023 20.76238 0,-98.19769 20.77348 0,-98.20166 20.78332 0,-98.2082 20.78818 0,-98.21691 20.79261 0,-98.22812 20.79326 0,-98.24205 20.79326 0,-98.25942 20.79632 0,-98.21913 20.74521 0))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 33 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286494-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxctky
title: Occurrence Download

description: A dataset containing 318 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is A taxonomic review of the genus Azteca (Hymenoptera: Formicidae) in Costa Rica and a global revision of the aurita group."
 ]
}

 The dataset includes 318 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060334-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbn3cw
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myopterus whitleyi (Scharff, 1900)"
 ]
}

 The dataset includes 65 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001314-150912100344238/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gyese
title: Occurrence Download

description: A dataset containing 1076 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-109.69939 15.64661,-88.83636 15.64661,-88.83636 25.34754,-109.69939 25.34754,-109.69939 15.64661))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus montezumae Lamb."
 ]
}

 The dataset includes 1076 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241136-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d3vyah
title: Occurrence Download

description: A dataset containing 8007 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Duranta erecta L."
 ]
}

 The dataset includes 8007 records from 176 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050908-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7582232
title: Relevant Datasets and Software Used for Paper "KGML-xDTD: A Knowledge Graph-based Machine Learning Framework for Drug Treatment Prediction and Mechanism Description"

description: This repository contains relevant datasets and software used in a paper "KGML-xDTD: A Knowledge Graph-based Machine Learning Framework for Drug Treatment Prediction and Mechanism Description". They are used to run the code of <em>KGML-xDTD </em>stored on Github and support the results of this paper. <strong>About the datasets</strong> 1. <em>bkg_rtxkg2c_v2.7.3.tar.gz</em> This tar.gz file contains three sub-folders: tsv_files, scripts, and relevant_dbs. The "tsv_files" sub-folder has the input files that the neo4j software uses. The "scripts" sub-folder contains a shell script with a relevant python script to construct the biomedical knowledge graph. The "relevant_dbs" sub-folder stores two auxiliary databases that <em>KGML-xDTD</em> needs to use. 2. <em>indication_paths.yaml</em> This file contains the DrugMechDB MOA paths that we used to evaluate the predicted MOA paths by <em>KGML-xDTD. </em>It is downloaded from the official GitHub repository of DrugMechDB. 3. <em>training_data.tar.gz</em> This tar.gz file contains the processed training data of four data sources (e.g., MyChem, SemMedDB, NDF-RT, RepoDB) mentioned in the paper. These processed drug-disease pairs have been matched to the identifiers of biological entities used in our biomedical knowledge graph and respectively split into true positive (tp) sets and true negative (tn) sets. We also provide the names of these drug identifiers and disease identifiers under a sub-folder "translated _to_name". <strong>About the software</strong> <em>neo4j-community-3.5.26.tar.gz</em> This tar.gz is the Neo4j community version 3.5.26 downloaded from Neo4j Download Center. Although the newer versions are available, due to their big changes in the Neo4j setting that are not compatible with our scripts on Github, we provide the version that we used in our research. If you would like to use the newer version, modifications to our script will be required to import the biomedical knowledge graph into your local Neo4j database with the new setting.
DOI: 10.57745/qbichu
title: metabolites-variableMetadata.tab

description: Infromations about metabolites from untargeted metabolomics C18-ESI+ analysis
DOI: 10.57745/bxscmn
title: sampleMetadata-BAL.tab

description: Metadata about samples (sex, BMI, age...)
DOI: 10.57745/dhmdtr
title: Taxonomy-table-BAL.tab

description: List of taxonomies corresponding to the various OTUs identified
DOI: 10.57745/emfxir
title: metabolites-intensity-BAL.tab

description: Intensity of metabolites from untargeted metabolomics C18-ESI+ analysis
DOI: 10.57745/ndbwx1
title: OTUs-table.tab

description: Table with OTUs count
DOI: 10.6084/m9.figshare.23301737
title: GBS was employed to genotype all 292 wheat accessions

description: GBS was employed to genotype all 292 wheat accessions
DOI: 10.6084/m9.figshare.23301737.v1
title: GBS was employed to genotype all 292 wheat accessions

description: GBS was employed to genotype all 292 wheat accessions
DOI: 10.25387/g3.23290001
title: Supplemental Material for Marr et al., 2023

description: This is the genomic variant call format file for the study entitled " <strong>Whole Genome Sequencing of Canadian</strong> <em><strong>Saccharomyces cerevisiae</strong></em> <strong>strains isolated from spontaneous wine fermentations reveals a new Pacific West Coast Wine Clade". </strong>This file contains genomic variant data for 75 S. cerevisiae strain isolated from spontaneous wine fermentations sourced from the Okanagan Valley BC as well as 296 previously sequenced strains from around the globe.
DOI: 10.25387/g3.23290001.v1
title: Supplemental Material for Marr et al., 2023

description: This is the genomic variant call format file for the study entitled " <strong>Whole Genome Sequencing of Canadian</strong> <em><strong>Saccharomyces cerevisiae</strong></em> <strong>strains isolated from spontaneous wine fermentations reveals a new Pacific West Coast Wine Clade". </strong>This file contains genomic variant data for 75 S. cerevisiae strain isolated from spontaneous wine fermentations sourced from the Okanagan Valley BC as well as 296 previously sequenced strains from around the globe.
DOI: 10.4121/c575b943-5d5b-473c-b8d8-2b91f98ea161
title: Data accompanying the publication "Power Consumption Analysis in 5G Base Station Antenna Transmit Front-End Configurations for Multibeam Generation"

description: This set includes the codes, figures and data used in preparing the publication titled "Power Consumption Analysis in 5G Base Station Antenna Transmit Front-End Configurations for Multibeam Generation". The main files consists of MATLAB scripts of the parametric power consumption model developed in the publication for multibeam antenna array architectures. Also includes in the dataset are several supplementary scripts for plotting the results and supporting figures generated using the script.
DOI: 10.4121/c575b943-5d5b-473c-b8d8-2b91f98ea161.v1
title: Data accompanying the publication "Power Consumption Analysis in 5G Base Station Antenna Transmit Front-End Configurations for Multibeam Generation"

description: This set includes the codes, figures and data used in preparing the publication titled "Power Consumption Analysis in 5G Base Station Antenna Transmit Front-End Configurations for Multibeam Generation". The main files consists of MATLAB scripts of the parametric power consumption model developed in the publication for multibeam antenna array architectures. Also includes in the dataset are several supplementary scripts for plotting the results and supporting figures generated using the script.
DOI: 10.6084/m9.figshare.23301650
title: Dataset of " Keep your eggs away: ant presence reduces <em>Ceratitis capitata </em>oviposition behaviour through trait-mediated indirect interactions "

description: the dataset contained the observation of the number of <em>C. capitata</em> pupae born from ant treated plums and the time spent by the medfly female on the plums to laying their eggs.
DOI: 10.6084/m9.figshare.23301650.v1
title: Dataset of " Keep your eggs away: ant presence reduces <em>Ceratitis capitata </em>oviposition behaviour through trait-mediated indirect interactions "

description: the dataset contained the observation of the number of <em>C. capitata</em> pupae born from ant treated plums and the time spent by the medfly female on the plums to laying their eggs.
DOI: 10.6084/m9.figshare.23301785
title: Radial basis function (RBF) neural networks are applied to predict the vehicle state with a driver under guidance.

description: The position, velocity, acceleration of the merging vehicle, difference between velocity and desired velocity and difference between acceleration and desired acceleration of the merging vehicle for the first <em>ta</em>/2 s are used as input features to output the velocity and position of the merging vehicle at <em>tp</em> moment. <br>
DOI: 10.6084/m9.figshare.23301785.v1
title: Radial basis function (RBF) neural networks are applied to predict the vehicle state with a driver under guidance.

description: The position, velocity, acceleration of the merging vehicle, difference between velocity and desired velocity and difference between acceleration and desired acceleration of the merging vehicle for the first <em>ta</em>/2 s are used as input features to output the velocity and position of the merging vehicle at <em>tp</em> moment. <br>
DOI: 10.6084/m9.figshare.23298608
title: INFOGRAMA ASSINADO PELO GOV BR: DADOS DE DOCUMENTOS ARQUIVÍTICOS

description: Os gráficos apresentados foram extraídos de arquivos digitais com assuntos relacionados sobre área Arquivística. Gráficos: Autores da área – Palavra-chave. Alguns assuntos pesquisados: Análise de documentos, Documentos Eletrônicos, Gerenciamento de Documentos.
DOI: 10.6084/m9.figshare.23298608.v2
title: INFOGRAMA ASSINADO PELO GOV BR: DADOS DE DOCUMENTOS ARQUIVÍTICOS

description: Os gráficos apresentados foram extraídos de arquivos digitais com assuntos relacionados sobre área Arquivística. Gráficos: Autores da área – Palavra-chave. Alguns assuntos pesquisados: Análise de documentos, Documentos Eletrônicos, Gerenciamento de Documentos.
DOI: 10.6084/m9.figshare.23298608.v1
title: INFOGRAMA_assinado (1) (1).pdf

description: .Os gráficos apresentaos foram extraídos de acordo com os arquivos descritos com assuntos da área Arquivística.
DOI: 10.5281/zenodo.8010522
title: GTN Tutorial: Cancer alignment

description: Data belonging to the GTN tutorial on cancer alignment. This tutorial is based on the Bioinformatics.ca cancer workshop
DOI: 10.5281/zenodo.8010521
title: GTN Tutorial: Cancer alignment

description: Data belonging to the GTN tutorial on cancer alignment. This tutorial is based on the Bioinformatics.ca cancer workshop
DOI: 10.6084/m9.figshare.23122349.v1
title: Supplementary Material for: <i>Mycobacterium avium</i> Complex Infections: Detailed Phenotypic and Functional Immunological Work-Up Is Required despite Genetic Analyses

description: <b><i>Introduction:</i></b> Cervical scrofulous lymphadenitis due to <i>Mycobacterium avium</i> complex (MAC) in immunocompetent adults is a rare disease. The presence of MAC infections demands meticulous clinical evaluation of patients along with detailed phenotypic and functional evaluation of their immune system including next-generation sequencing (NGS) analyses of target genes. <b><i>Methods:</i></b> Exact clinical histories of the index patients both suffering from retromandibular/cervical scrofulous lymphadenitis were obtained along with phenotypic and functional immunological evaluations of leukocyte populations followed by targeted NGS-based sequencing of candidate genes. <b><i>Results:</i></b> Immunological investigations showed normal serum immunoglobulin and complement levels, but lymphopenia, which was caused by significantly reduced CD3<sup>+</sup>CD4<sup>+</sup>CD45RO<sup>+</sup> memory T-cell and CD19<sup>+</sup> B-cell numbers. Despite normal T-cell proliferation to a number of accessory cell-dependent and -independent stimuli, the PBMC of both patients elaborated clearly reduced levels of a number of cytokines, including IFN-γ, IL-10, IL-12p70, IL-1α, IL-1β, and TNF-α upon TCR-dependent T-cell stimulation with CD3-coated beads but also superantigens. The IFN-γ production deficiency was confirmed for CD3<sup>+</sup>CD4<sup>+</sup> helper and CD4<sup>+</sup>CD8<sup>+</sup> cytotoxic T cells on the single-cell level by multiparametric flow cytometry irrespective of whether PMA/ionomycin-stimulated whole blood cells or gradient-purified PBMC was analyzed. In the female patient L1, targeted NGS-based sequencing revealed a homozygous c.110T&gt;C mutation in the interferon-γ receptor type 1 (IFNGR1) leading to significantly reduced receptor expression on both CD14<sup>+</sup> monocytes and CD3<sup>+</sup> T cells. Patient S2 presented with normal IFNGR1 expression on CD14<sup>+</sup> monocytes but significantly reduced IFNGR1 expression on CD3<sup>+</sup> T cells, despite the absence of detectable homozygous mutations in the IFNGR1 itself or disease-related target genes. Exogenous addition of increasing doses of IFN-γ resulted in proper upregulation of high-affinity FcγRI (CD64) on monocytes from patient S2, whereas monocytes from patient L1 showed only partial induction of CD64 expression after incubation with high doses of IFN-γ. <b><i>Conclusion:</i></b> A detailed phenotypic and functional immunological examination is urgently required to determine the cause of a clinically relevant immunodeficiency, despite detailed genetic analyses.
DOI: 10.5281/zenodo.7802078
title: Simultaneous emotional stimuli prolong the timing of vibrotactile events

description: Temporal information plays a crucial role in human everyday life. Yet, perceived time is subject to distortions. Emotion, for instance, is a powerful time modulator in that emotional events are perceived longer than neutral events of the same length. However, it is unknown how exposure to emotional stimuli influences the time perception of a simultaneous neutral tactile event. To fill this gap, we tested the effect of emotional auditory sounds on the perception of neutral vibrotactile feedback. We used neutral and emotional (i.e., pleasant-high arousal, pleasant-low arousal, unpleasant-high arousal, and unpleasant-low arousal) auditory stimuli from the International Digitized Sound System (IADS). Tactile information was a vibrotactile stimulus at a fixed intensity and presented through a custom-made vibrotactile sleeve. Participants listened to auditory stimuli which were temporally coupled with vibrotactile stimulation for 2,3,4, or 5sec. Their task was to focus on the duration of vibrotactile information and reproduce elapsed time. We tested the effects of valence and arousal of auditory stimuli on the perceived duration of vibrotactile information. Simultaneously presented auditory stimuli, in general, lengthened the perceived duration of the neutral vibrotactile information compared to neutral auditory stimuli. We conclude that emotional events influence time perception of simultaneous neutral haptic events.
DOI: 10.6084/m9.figshare.23301758
title: Supplementary Table S2. Gene Ontology enrichment of the genes regulated by exclusive Master Regulator (MRs) from PriNorm, MetPri, and MetNorm signatures.

description: Supplementary Table S2. Gene Ontology enrichment of the genes regulated by exclusive Master Regulator (MRs) from PriNorm, MetPri, and MetNorm signatures. These data are part of the article "<strong>Revealing metastatic castration-resistant prostate cancer</strong> <strong>master regulator through lncRNAs-centered regulatory network".</strong>
DOI: 10.6084/m9.figshare.23301758.v1
title: Supplementary Table S2. Gene Ontology enrichment of the genes regulated by exclusive Master Regulator (MRs) from PriNorm, MetPri, and MetNorm signatures.

description: Supplementary Table S2. Gene Ontology enrichment of the genes regulated by exclusive Master Regulator (MRs) from PriNorm, MetPri, and MetNorm signatures. These data are part of the article "<strong>Revealing metastatic castration-resistant prostate cancer</strong> <strong>master regulator through lncRNAs-centered regulatory network".</strong>
DOI: 10.6084/m9.figshare.23267021.v1
title: Supplementary Material for: Urea Reduction in Acute Kidney Injury and Mortality Risk

description: <b><i>Introduction:</i></b> Urea is a toxin present in acute kidney injury (AKI). We hypothesize that reduction in serum urea levels might improve clinical outcomes. We examined the association between the reduction in urea and mortality. <b><i>Methods:</i></b> Patients with AKI admitted to the Hospital Civil de Guadalajara were enrolled in this retrospective cohort study. We create 4 groups of urea reduction ratio (UXR) stratified by their decrease in urea from the highest index value in comparison to the value on day 10 (0%, 1–25%, 26–50%, and &gt;50%), or at the time of death or discharge if prior to 10 days. Our primary endpoint was to observe the association between UXR and mortality. Secondary observations included determination of which types of patients achieved a UXR &gt;50%, whether the modality of kidney replacement therapy (KRT) effected changes in UXR, and if serum creatinine (sCr) value changes were similarly associated with patient mortality. <b><i>Results:</i></b> A total of 651 AKI patients were enrolled. The mean age was 54.1 years, and 58.6% were male. AKI 3 was present in 58.5%; the mean admission urea was 154 mg/dL. KRT was started in 32.4%, and 18.9% died. A trend toward decreased risk of death was observed in association with the magnitude of UXR. The best survival (94.3%) was observed in patients with a UXR &gt;50%, and the highest mortality (72.1%) was observed in patients achieving a UXR of 0%. After adjusting for age, sex, diabetes mellitus, CKD, antibiotics, sepsis, hypovolemia, cardio-renal syndrome, shock, and AKI stage, the 10-day mortality was higher in groups that did not achieve a UXR of at least 25% (OR: 1.20). Patients achieving a UXR &gt;50% were most likely initiated on dialysis due to a diagnosis of the uremic syndrome or had a diagnosis of obstructive nephropathy. Percentage change in sCr was also associated with increased mortality risk. <b><i>Conclusions:</i></b> In our retrospective cohort of AKI patients, the percent decrease in UXR from admission was associated with a stratified risk of death. Patients with a UXR &gt;25% had the best associated outcomes. Overall, a greater magnitude in UXR was associated with improved patient survival.
DOI: 10.6084/m9.figshare.23301872
title: INFOGRAMA ASSINADO PELO GOV BR: DADOS DE DOCUMENTOS ARQUIVÍTICOS

description: Os gráficos apresentados foram extraídos de arquivos digitais com assuntos relacionados sobre a área Arquivística. Gráficos: Autores da área – Palavra-chave. Alguns assuntos pesquisados: Análise de documentos, Documentos Eletrônicos, Gerenciamento de Documentos.
DOI: 10.6084/m9.figshare.23301872.v1
title: INFOGRAMA ASSINADO PELO GOV BR: DADOS DE DOCUMENTOS ARQUIVÍTICOS

description: Os gráficos apresentados foram extraídos de arquivos digitais com assuntos relacionados sobre a área Arquivística. Gráficos: Autores da área – Palavra-chave. Alguns assuntos pesquisados: Análise de documentos, Documentos Eletrônicos, Gerenciamento de Documentos.
DOI: 10.17638/datacat.liverpool.ac.uk/2244
title: Single-Molecule Conductance Data for a series of Ligands and their Metal Carbonyl Complexes.

description: As in title. Entry contains raw and processed data, along with example plots in OriginLab format.
description: See README