cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14512998
title: 3D Motion-as-a-Service Human Motion Dataset A

description: This is a dataset created using the Rokoko motion capture system at CYENS Centre of Excellence (CY/EU).

The dataset is part of the 3D Motion-as-a-Service project lead by ALGOLYSIS Ltd.
DOI: 10.5281/zenodo.14512999
title: 3D Motion-as-a-Service Human Motion Dataset A

description: This is a dataset created using the Rokoko motion capture system at CYENS Centre of Excellence (CY/EU).

The dataset is part of the 3D Motion-as-a-Service project lead by ALGOLYSIS Ltd.
DOI: 10.6084/m9.figshare.c.3708184_d3
title: Additional file 3: Table S5. of 
                     De novo transcriptome assembly reveals high transcriptional complexity in Pisum sativum axillary buds and shows rapid changes in expression of diurnally regulated genes

description: BLAST2GO annotation of the pea axillary bud transcriptome against Arabidopsis thaliana protein sequences. (XLSX 16823Â kb)
DOI: 10.6084/m9.figshare.c.3708184_d5.v1
title: Additional file 5: Table S7. of 
                     De novo transcriptome assembly reveals high transcriptional complexity in Pisum sativum axillary buds and shows rapid changes in expression of diurnally regulated genes

description: List of putative long non-coding RNA in the pea axillary bud isoform transcriptome and their open reading frame (ORF) size. Table S9. List of putative long non-coding RNA in the pea axillary bud isoform transcriptome that match to lncRNA in Medicago [21]. Table S10. List of putative long non-coding RNA in the pea axillary bud isoform transcriptome that match to NAT lncRNA in Arabidopsis [20]. Table S11. Rfam hits for pea axillary bud isoforms. Table S12. KEGG Pathway annotation of the pea axillary bud transcriptome. Table S13. Biological processes GO annotation of the pea axillary bud transcriptome. Table S14. Cellular component GO annotation of the pea axillary bud transcriptome. Table S15. Molecular function GO annotation of the pea axillary bud transcriptome. (XLSX 4242Â kb)
DOI: 10.6084/m9.figshare.c.3708184_d4
title: Additional file 4: Table S6. of 
                     De novo transcriptome assembly reveals high transcriptional complexity in Pisum sativum axillary buds and shows rapid changes in expression of diurnally regulated genes

description: BLAST2GO annotation of the pea axillary bud transcriptome against the non-redundant (nr) protein database. (XLSX 15158Â kb)
DOI: 10.6084/m9.figshare.c.3708184_d5
title: Additional file 5: Table S7. of 
                     De novo transcriptome assembly reveals high transcriptional complexity in Pisum sativum axillary buds and shows rapid changes in expression of diurnally regulated genes

description: List of putative long non-coding RNA in the pea axillary bud isoform transcriptome and their open reading frame (ORF) size. Table S9. List of putative long non-coding RNA in the pea axillary bud isoform transcriptome that match to lncRNA in Medicago [21]. Table S10. List of putative long non-coding RNA in the pea axillary bud isoform transcriptome that match to NAT lncRNA in Arabidopsis [20]. Table S11. Rfam hits for pea axillary bud isoforms. Table S12. KEGG Pathway annotation of the pea axillary bud transcriptome. Table S13. Biological processes GO annotation of the pea axillary bud transcriptome. Table S14. Cellular component GO annotation of the pea axillary bud transcriptome. Table S15. Molecular function GO annotation of the pea axillary bud transcriptome. (XLSX 4242Â kb)
DOI: 10.15468/dl.fujj33
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aptocyclus ventricosus (Pallas, 1769)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038845-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3709306_d4
title: Additional file 13: Simulated Dataset 5. of ProteoModlR for functional proteomic analysis

description: Normalization simulated dataset 2. The file contains the simulated datasets used to model differences in peptide intensity introduced by uneven performance of the LC/MS instrumentation or unequal sample amount, with no isotopically labelled internal standard. The output shows the result of normalization by total ion current, as displayed in Additional file 4: Figure S4. (CSV 2 kb)
DOI: 10.6084/m9.figshare.c.3709306_d5.v1
title: Additional file 14: Simulated Dataset 6. of ProteoModlR for functional proteomic analysis

description: Normalization simulated dataset 3. The file contains the simulated datasets used to model differences in the peptide intensity introduced by biological factors that vary the protein amount per cell by affecting the expression of a limited subset of the proteome. The output shows the result of isotopologue normalization followed by normalization by reference peptide, as displayed in Additional file 5: Figure S5. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3709306_d7.v1
title: Additional file 16: Simulated Dataset 9. of ProteoModlR for functional proteomic analysis

description: Analysis simulated dataset 2. This simulated dataset models an input with incomplete annotation of peptides required for exact calculation of abundance in the Analysis module of ProteoModlR. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3709306_d6.v1
title: Additional file 15: Simulated Dataset 8. of ProteoModlR for functional proteomic analysis

description: Analysis simulated dataset 1. This simulated dataset models an input with complete annotation of peptides required for exact calculations in the Analysis module of ProteoModlR. This file provides a reference for approximate calculations, and demonstrates the annotation performed by the quality control module of ProteModlR. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3709306_d6
title: Additional file 15: Simulated Dataset 8. of ProteoModlR for functional proteomic analysis

description: Analysis simulated dataset 1. This simulated dataset models an input with complete annotation of peptides required for exact calculations in the Analysis module of ProteoModlR. This file provides a reference for approximate calculations, and demonstrates the annotation performed by the quality control module of ProteModlR. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3709306_d5
title: Additional file 14: Simulated Dataset 6. of ProteoModlR for functional proteomic analysis

description: Normalization simulated dataset 3. The file contains the simulated datasets used to model differences in the peptide intensity introduced by biological factors that vary the protein amount per cell by affecting the expression of a limited subset of the proteome. The output shows the result of isotopologue normalization followed by normalization by reference peptide, as displayed in Additional file 5: Figure S5. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3709306_d7
title: Additional file 16: Simulated Dataset 9. of ProteoModlR for functional proteomic analysis

description: Analysis simulated dataset 2. This simulated dataset models an input with incomplete annotation of peptides required for exact calculation of abundance in the Analysis module of ProteoModlR. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3709306_d8.v1
title: Additional file 17: Simulated Dataset 10. of ProteoModlR for functional proteomic analysis

description: Analysis simulated dataset 3. This simulated dataset models an input with incomplete annotation of chemically modified peptides intensity, required for exact calculation of stoichiometry in the Analysis module of ProteoModlR. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3709312_d1.v1
title: Additional file 1: of Social dominance explains within-ejaculate variation in sperm design in a passerine bird

description: Davidâ  s scores used as proxies for social rank. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3709306_d9
title: Additional file 18: Simulated Dataset 11. of ProteoModlR for functional proteomic analysis

description: Analysis simulated dataset 4. This simulated dataset models an input with incomplete annotation of non-chemically modified peptides intensity, required for exact calculation of stoichiometry in the Analysis module of ProteoModlR. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3709306_d9.v1
title: Additional file 18: Simulated Dataset 11. of ProteoModlR for functional proteomic analysis

description: Analysis simulated dataset 4. This simulated dataset models an input with incomplete annotation of non-chemically modified peptides intensity, required for exact calculation of stoichiometry in the Analysis module of ProteoModlR. (CSV 5 kb)
DOI: 10.5281/zenodo.14513105
title: Groß-Bieberau Odenwald Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.6084/m9.figshare.c.3709306_d8
title: Additional file 17: Simulated Dataset 10. of ProteoModlR for functional proteomic analysis

description: Analysis simulated dataset 3. This simulated dataset models an input with incomplete annotation of chemically modified peptides intensity, required for exact calculation of stoichiometry in the Analysis module of ProteoModlR. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3709312_d2.v1
title: Additional file 2: of Social dominance explains within-ejaculate variation in sperm design in a passerine bird

description: Explicit variable names are to be found in comments. (XLSX 48 kb)
DOI: 10.15468/dl.xne7dz
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paralvinella dela Detinova, 1988"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038846-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3709312_d1
title: Additional file 1: of Social dominance explains within-ejaculate variation in sperm design in a passerine bird

description: Davidâ  s scores used as proxies for social rank. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3709312_d3.v1
title: Additional file 3: of Social dominance explains within-ejaculate variation in sperm design in a passerine bird

description: Script of the statistical analyses run with SAS. (TXT 8 kb)
DOI: 10.6084/m9.figshare.c.3709312_d2
title: Additional file 2: of Social dominance explains within-ejaculate variation in sperm design in a passerine bird

description: Explicit variable names are to be found in comments. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3709312_d3
title: Additional file 3: of Social dominance explains within-ejaculate variation in sperm design in a passerine bird

description: Script of the statistical analyses run with SAS. (TXT 8 kb)
DOI: 10.6084/m9.figshare.c.3709315_d1.v1
title: Additional file 1 of Detection of statistically significant network changes in complex biological networks

description: Table S1. Description of data: GHD and MRA Results for all the 457 considered transcription factors on the TCGA and Rembrandt datasets. (XLSX 62.7 kb)
DOI: 10.5281/zenodo.14444296
title: POCACO: Polyp Videos for CADe Comparison

description: POCACO: Polyp Videos for CADe Comparison

This dataset contains a selection of clips extracted from Colonoscopy recordings, some of which contain Polyps, others are confirmed to only contain healthy mucosa.

Access:

To access the dataset as a researcher or medical professional, please contact:

research@augere.md

Dataset details:



54 Clips of varying length

28 Annotated polyps

83746 Total frames

72069 Negative frames

11677 Positive frames


Metadata structure:

The provided metadata file is structured as shown below, here:



V: The clip number for the associated clip

F: The frame number for the associated bounding box


{ // Dictionary containing video details for all videos in the dataset
    "$V": { // Video details for video $V
        "findings": [ // List of findings, each finding is a separate dictionary
            { // Dictionary containing annotations for each frame for this finding
                "$F": [ // Bounding box in COCO format for the current finding in frame $F
                    x,
                    y,
                    width,
                    height
                ],
                ...
            },
            ...
         ],
        "negative_frames": $N, // Positive frames (containing polyp) for this video
        "positive_frames": $P, // Negative frames (not containing polyp) for this video
    },
    ...
}
DOI: 10.5281/zenodo.14444297
title: POCACO: Polyp Videos for CADe Comparison

description: POCACO: Polyp Videos for CADe Comparison

This dataset contains a selection of clips extracted from Colonoscopy recordings, some of which contain Polyps, others are confirmed to only contain healthy mucosa.

Access:

To access the dataset as a researcher or medical professional, please contact:

research@augere.md

Dataset details:



54 Clips of varying length

28 Annotated polyps

83746 Total frames

72069 Negative frames

11677 Positive frames


Metadata structure:

The provided metadata file is structured as shown below, here:



V: The clip number for the associated clip

F: The frame number for the associated bounding box


{ // Dictionary containing video details for all videos in the dataset
    "$V": { // Video details for video $V
        "findings": [ // List of findings, each finding is a separate dictionary
            { // Dictionary containing annotations for each frame for this finding
                "$F": [ // Bounding box in COCO format for the current finding in frame $F
                    x,
                    y,
                    width,
                    height
                ],
                ...
            },
            ...
         ],
        "negative_frames": $N, // Positive frames (containing polyp) for this video
        "positive_frames": $P, // Negative frames (not containing polyp) for this video
    },
    ...
}
DOI: 10.5281/zenodo.10911537
title: Crocus-ERA-Interim daily snow product over the Northern Hemisphere at 0.5° resolution

description: The Crocus-ERA-Interim daily snow product is derived from the complex snow scheme Crocus coupled to the ISBA (Interactions between Soil–Biosphere–Atmosphere) land surface model (Brun et al., 2013) and embedded into the SURFEX numerical platform (https://www.umr-cnrm.fr/surfex/). The model is driven by a meteorological forcing (temperature, precipitation, humidity, winds, etc) derived from the ERA-Interim global atmospheric reanalysis (https://www.ecmwf.int/en/forecasts/dataset/ecmwf-reanalysis-interim). This product only concerns open field snowpack, i.e. only low vegetation is modeled (no forest). It covers the entire Northern Hemisphere at 0.5° resolution over the 1979-07-01 to 2019-06-30 period. Snow depth and snow water equivalent (i.e. the snow mass) are available at a dailly frequency. The simulated snow depth, snow water equivalent, and density over open fields were validated against local observations from over 1000 monitoring sites in Northern Eurasian, available either once a day or three times per month (Brun et al., 2013). This product was used by the NOAA Artic Report Card from 2017 to 2020 for the annual survey of the Terrestrial Snow Cover anomalies over the Northern Hemisphere. This product was also used in several research studies (e.g. Mudryk et al., 2015; Mortimer et al., 2020; Kouki et al., 2023). The successor of this product based on ERA5 at 0.25° resolution over 1950 to 2023 can be found in Decharme (2024b).
description: snd = snow depth (m) at dailly frequency

snw = snow water equivalent (kg/m²) at dailly frequency

tsns = snow surface temperature (K) at monthly frequency

tsn = snowpack internal temperature (K) at monthly frequency

snc = snow cover fraction (-) at monthly frequency

Note : In this updated v2 version of the dataset, the metadata necessary for QGIS projection support have been incorporated in each netcdf files.
DOI: 10.5281/zenodo.10911538
title: Crocus-ERA-Interim daily snow product over the Northern Hemisphere at 0.5° resolution

description: The Crocus-ERA-Interim daily snow product is derived from the complex snow scheme Crocus coupled to the ISBA (Interactions between Soil–Biosphere–Atmosphere) land surface model (Brun et al., 2013) and embedded into the SURFEX numerical platform (https://www.umr-cnrm.fr/surfex/). The model is driven by a meteorological forcing (temperature, precipitation, humidity, winds, etc) derived from the ERA-Interim global atmospheric reanalysis (https://www.ecmwf.int/en/forecasts/dataset/ecmwf-reanalysis-interim). This product only concerns open field snowpack, i.e. only low vegetation is modeled (no forest). It covers the entire Northern Hemisphere at 0.5° resolution over the 1979-07-01 to 2019-06-30 period. Snow depth and snow water equivalent (i.e. the snow mass) are available at a dailly frequency. The simulated snow depth, snow water equivalent, and density over open fields were validated against local observations from over 1000 monitoring sites in Northern Eurasian, available either once a day or three times per month (Brun et al., 2013). This product was used by the NOAA Artic Report Card from 2017 to 2020 for the annual survey of the Terrestrial Snow Cover anomalies over the Northern Hemisphere. This product was also used in several research studies (e.g. Mudryk et al., 2015; Mortimer et al., 2020; Kouki et al., 2023). The successor of this product based on ERA5 at 0.25° resolution over 1950 to 2023 can be found in Decharme (2024b).
description: snd = snow depth (m) at dailly frequency

snw = snow water equivalent (kg/m²) at dailly frequency

tsns = snow surface temperature (K) at monthly frequency

tsn = snowpack internal temperature (K) at monthly frequency

snc = snow cover fraction (-) at monthly frequency
DOI: 10.5281/zenodo.14513040
title: Crocus-ERA-Interim daily snow product over the Northern Hemisphere at 0.5° resolution

description: The Crocus-ERA-Interim daily snow product is derived from the complex snow scheme Crocus coupled to the ISBA (Interactions between Soil–Biosphere–Atmosphere) land surface model (Brun et al., 2013) and embedded into the SURFEX numerical platform (https://www.umr-cnrm.fr/surfex/). The model is driven by a meteorological forcing (temperature, precipitation, humidity, winds, etc) derived from the ERA-Interim global atmospheric reanalysis (https://www.ecmwf.int/en/forecasts/dataset/ecmwf-reanalysis-interim). This product only concerns open field snowpack, i.e. only low vegetation is modeled (no forest). It covers the entire Northern Hemisphere at 0.5° resolution over the 1979-07-01 to 2019-06-30 period. Snow depth and snow water equivalent (i.e. the snow mass) are available at a dailly frequency. The simulated snow depth, snow water equivalent, and density over open fields were validated against local observations from over 1000 monitoring sites in Northern Eurasian, available either once a day or three times per month (Brun et al., 2013). This product was used by the NOAA Artic Report Card from 2017 to 2020 for the annual survey of the Terrestrial Snow Cover anomalies over the Northern Hemisphere. This product was also used in several research studies (e.g. Mudryk et al., 2015; Mortimer et al., 2020; Kouki et al., 2023). The successor of this product based on ERA5 at 0.25° resolution over 1950 to 2023 can be found in Decharme (2024b).
description: snd = snow depth (m) at dailly frequency

snw = snow water equivalent (kg/m²) at dailly frequency

tsns = snow surface temperature (K) at monthly frequency

tsn = snowpack internal temperature (K) at monthly frequency

snc = snow cover fraction (-) at monthly frequency

Note : In this updated v2 version of the dataset, the metadata necessary for QGIS projection support have been incorporated in each netcdf files.
DOI: 10.57754/fdat.zgj4y-khv88
title: Gedichtkorpus Shakespeare /  Dickinson / Cummings

description: Poems from Shakespeare /  Dickinson / Cummings.
description: Research carried out in work package A02 of the SFB 833.
DOI: 10.6084/m9.figshare.c.3711562_d13
title: Additional file 8: Table S7. of Machine learning classifier for identification of damaging missense mutations exclusive to human mitochondrial DNA-encoded polypeptides

description: Conservation Index (CI) in Eukaryota. Each score is described by its gene (GENE), amino acid position within the polypeptide (AA position) and wild type amino acid (WT AA) as well as number of ortholog sequences used in the multiple sequence alignment (Sequences). CI is described as a percentage. The revised Cambridge reference sequence (rCRS, NC_012920.1) was used to define the reference amino acid sequence of each gene. (XLS 453 kb)
DOI: 10.6084/m9.figshare.c.3711556_d12.v1
title: Additional file 7: Table S6. of Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3

description: Predicted vacuolar processing enzyme (VPE) binding motifs within the 2000-bp upstream region starting from ATG. (XLS 16Â kb)
DOI: 10.6084/m9.figshare.c.3711556_d12
title: Additional file 7: Table S6. of Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3

description: Predicted vacuolar processing enzyme (VPE) binding motifs within the 2000-bp upstream region starting from ATG. (XLS 16Â kb)
DOI: 10.6084/m9.figshare.c.3711556_d13.v1
title: Additional file 8: Table S7. of Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3

description: Primers used in the ChIP-quantitative PCR analysis. (XLS 16Â kb)
DOI: 10.6084/m9.figshare.c.3711556_d13
title: Additional file 8: Table S7. of Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3

description: Primers used in the ChIP-quantitative PCR analysis. (XLS 16Â kb)
DOI: 10.6084/m9.figshare.c.3711556_d14.v1
title: Additional file 9: Table S8. of Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3

description: Identification of proteins that interact with SlVPE3 using SWATH-MS. (XLS 168Â kb)
DOI: 10.6084/m9.figshare.c.3711556_d14
title: Additional file 9: Table S8. of Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3

description: Identification of proteins that interact with SlVPE3 using SWATH-MS. (XLS 168Â kb)
DOI: 10.6084/m9.figshare.c.3712708_d1.v1
title: Additional file 1 of A new parallel pipeline for DNA methylation analysis of long reads datasets

description: Text document containing an example of the command launched to execute each of the tools. (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3712708_d1
title: Additional file 1 of A new parallel pipeline for DNA methylation analysis of long reads datasets

description: Text document containing an example of the command launched to execute each of the tools. (TXT 2 kb)