cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1091971.09fu
title: SH1091971.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1091972.09fu
title: SH1091972.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.17632/shvph7b6t3.6
title: Interventions for molluscum contagiosum: a systematic review and network meta-analysis with normalized entropy assessment 

description: Supplementary tables and figures
DOI: 10.17632/frmpk6nkxf.1
title: dataset

description: consumer behavior data
DOI: 10.17632/j5g2w7ff39.1
title: Table 3. Apparent and estimated true prevalence of gastrointestinal parasites of dogs found in parks in Australia based on centrifugal faecal floatation and qPCRs

description: Apparent and estimated true prevalence of gastrointestinal parasites of dogs found in parks in Australia based on centrifugal faecal floatation and qPCRs. A total of 1581 faecal samples from 190 dog parks were analyzed.
DOI: 10.17632/8dxsyz4wgb.1
title: manuscript CDEV-D-22-00028

description: graphics and videos
DOI: 10.17632/sg8j7mw5h7.1
title: APTAC-AAc hydrogel supportive Materials SEM, DSC FTIR and ICP-MS data

description: FTIR, DCS, SEM, ICP-MS data of Metal Adsorption.
DOI: 10.5281/zenodo.6532805
title: River-groundwater Interaction and Recharge Effects on Microplastics Contamination of Groundwater in Confined Alluvial Aquifers: Original dataset

description: The dataset includes all the microplastics analysed for the manuscript "River–Groundwater Interaction and Recharge Effects on Microplastics Contamination of Groundwater in Confined Alluvial Aquifers" by Edoardo Severini, Laura Ducci, Alessandra Sutti, Stuart Robottom, Sandro Sutti and Fulvio Celico (https://doi.org/10.3390/w14121913). The dataset "MP (ctrl and sample).txt" contains the raw data of environmental and ctrl samples. The values of the ctrl samples were used to analyse the statistical differences between ctrl and environmental samples and subsequently used to define the identification parameters (threshold) for the microplastics identification in surface water and groundwater, contained in the file "MP (after ctrl sample).txt".
DOI: 10.17632/32rdw5c6nd.1
title: data-3

description: original data
DOI: 10.5281/zenodo.6532804
title: River-groundwater Interaction and Recharge Effects on Microplastics Contamination of Groundwater in Confined Alluvial Aquifers: Original dataset

description: The dataset includes all the microplastics analysed for the manuscript "River–Groundwater Interaction and Recharge Effects on Microplastics Contamination of Groundwater in Confined Alluvial Aquifers" by Edoardo Severini, Laura Ducci, Alessandra Sutti, Stuart Robottom, Sandro Sutti and Fulvio Celico (https://doi.org/10.3390/w14121913). The dataset "MP (ctrl and sample).txt" contains the raw data of environmental and ctrl samples. The values of the ctrl samples were used to analyse the statistical differences between ctrl and environmental samples and subsequently used to define the identification parameters (threshold) for the microplastics identification in surface water and groundwater, contained in the file "MP (after ctrl sample).txt".
DOI: 10.17632/k5gfffp4km.1
title: OILE_Advantages and Disadvantages

description: This data contains coding analysis, SPSS outputs, and interview protocols
DOI: 10.17632/xd3w96jzy8.1
title: Supplementary File

description: Supplementary File
DOI: 10.17632/66hzt799fb.1
title: BovineTrypanosomosis_HS/GC-MS_Files

description: GC-MS raw files (.qgd extension) referent to the paper "A cerumenolomic approach to bovine trypanosomosis diagnosis https://doi.org/10.1007/s11306-022-01901-y"
DOI: 10.5281/zenodo.6718875
title: Minimizing Search Areas for Leak Detection in Water Distribution Networks - Code

description: This database includes the code used to analyze and produce the results for the following research article: Minimizing Search Areas for Leak Detection in Water Distribution Networks by B. Snider, G. Lewis, A.S. Chen, L. Vamvakeridou-Lyroudia, S. Djordjevic, D.A. Savic. Journal of Hydroinformatics. (Accepted - awaiting publication).
DOI: 10.5281/zenodo.6718874
title: Minimizing Search Areas for Leak Detection in Water Distribution Networks - Code

description: This database includes the code used to analyze and produce the results for the following research article: Minimizing Search Areas for Leak Detection in Water Distribution Networks by B. Snider, G. Lewis, A.S. Chen, L. Vamvakeridou-Lyroudia, S. Djordjevic, D.A. Savic. Journal of Hydroinformatics. (Accepted - awaiting publication).
DOI: 10.5281/zenodo.6576248
title: On the importance of representing snow over sea-ice for simulating the Arctic boundary layer

description: Correctly representing the snow on sea-ice in coupled numerical weather prediction models has great potential to improve weather forecast and climate monitoring applications, such as climate reanalyses, which are usually produced using such systems. In this study two different methodologies to account for the effect of the snowpack accumulating over the sea-ice in 5-day global forecasts are compared. This dataset contains the high-resolution (dx=9km) model data for the different simulations, with and without the snow over sea-ice, co-located with observations at the locations of the SHEBA and N-ICE2015 field campaigns. The dataset also contains the daily averaged skin temperature, for the different simulations (interpolated on 0.25x0.25) performed over the extended time period, 2015-01-01 to 2015-02-28.
description: {"references": ["Arduini, G., Keeley, S., Day, J. J., Sandu, I., Zampieri, L., & Balsamo, G. (2022). On the importance of representing snow over sea-ice for simulating the Arctic boundary layer. Journal of Advances in Modeling Earth Systems, 14, e2021MS002777. https://doi.org/10.1029/2021MS002777"]}
DOI: 10.5281/zenodo.6576247
title: On the importance of representing snow over sea-ice for simulating the Arctic boundary layer

description: Correctly representing the snow on sea-ice in coupled numerical weather prediction models has great potential to improve weather forecast and climate monitoring applications, such as climate reanalyses, which are usually produced using such systems. In this study two different methodologies to account for the effect of the snowpack accumulating over the sea-ice in 5-day global forecasts are compared. This dataset contains the high-resolution (dx=9km) model data for the different simulations, with and without the snow over sea-ice, co-located with observations at the locations of the SHEBA and N-ICE2015 field campaigns. The dataset also contains the daily averaged skin temperature, for the different simulations (interpolated on 0.25x0.25) performed over the extended time period, 2015-01-01 to 2015-02-28.
description: {"references": ["Arduini, G., Keeley, S., Day, J. J., Sandu, I., Zampieri, L., & Balsamo, G. (2022). On the importance of representing snow over sea-ice for simulating the Arctic boundary layer. Journal of Advances in Modeling Earth Systems, 14, e2021MS002777. https://doi.org/10.1029/2021MS002777"]}
DOI: 10.34740/kaggle/dsv/3855461
title: WallStreetBets 2022
DOI: 10.15151/esrf-es-857089709
title: High resolution structure of the neuronal MAP6 bound to microtubules

description: Microtubules composed of  tubulin heterodimer units undergo constant growth and shrinkage. This property is defined as dynamic instability, which is an integral part of the cellular activity. In neurons, the dynamic microtubules are present together with stable microtubules. Several microtubule-associated proteins (MAP) have been characterized for regulating dynamic microtubules, however the molecular mechanisms used to stabilise microtubules are largely unknown. Our team study the neuronal microtubule stabiliser MAP6 for several years and showed recently that MAP6 binds inside and outside the microtubule cylinder. Deciphering at the molecular level how MAP6 binds to microtubules (outside and inside) will help to understand how this microtubule associated protein increases the stability of microtubules in neurons.
DOI: 10.5281/zenodo.6718943
title: Dataset of Impact of pre-breeding feeding practices on rabbit mammary gland development at mid-pregnancy

description: The dataset includes search results used in article “Impact of pre-breeding feeding practices on rabbit mammary gland development at mid-pregnancy” biorXiv, 2022.01.17.476562, ver. 3 peer-reviewed and recommended by Peer Community in Animal Science. https://doi.org/10.1101/2022.01.17.476562 Search Results Description: Please use Figure 1 from paper to trace the data made available and experimental group. The excel “raw data 2022-06-24” file contains the following data Body weight of each rabbit on a weekly basis Analysis of breeding parameters at mid-pregnancy Histological areas of each mammry tissue measured Optical density values obtained for biochemical leptin concentration determination Optical density values obtained for biochemical triglyceride concentration determination Optical density values obtained for biochemical glucose concentration determination Optical density values obtained for biochemical cholesterol concentration determination RT-qPCR results (Ct) from QuantStudio export for milk protein analysis RT-qPCR results (Ct) from QuantStudio export for lipid metabolism analysisen “Statistical analysis.doc” contained the description of the statistics used in Excel and the R script for the linear mixed model analysis, the reference of the script available by the CRAN project is also include.
DOI: 10.17632/r4rp6r6r9p.1
title: Fernández and Alli - Tetraglochin pollen

description: Pollen morphology of the six species of Tetraglochin. Measurements expressed in um, taken on optical microscope microphotographs, using Image J 1.53K.
DOI: 10.17632/vhyysw8xt2.2
title: Data and code from: A repeatable and quantitative DNA metabarcoding assay to characterize mixed strongyle infections in horses. Int J Parasitology

description: Raw ITS2 sequences, R script to process sequences into Amplicon Sequence Variants (ASVs) and assign taxonomy, the ITS2 database required to conduct taxonomic assignment, and resulting nemabiome results, as reported in Poissant et al. A repeatable and quantitative DNA metabarcoding assay to characterize mixed strongyle infections in horses. Int J Parasitology.

An error was present in the original R script. The corrected script/pipeline is now Poissant_et_al_equine_nemabiome_pipeline_v2.

The currated database used in the original publication is Poissant_et_al_Equine_Parasitic_Nematodes_Reference_Taxonomy_Database_v1.fasta. This database has been updated following the release of a newer ITS2 nematode database on www.nemabiome.ca. The curated version of that database for use in equine nemabiome analyses is provided here (version 1.3).  



Please cite the original article if using any of this code or data.
DOI: 10.17632/5d87fprdg8.1
title: Invention Patents vs Research Articles Ratio study on WIPO, OECD, EU tables

description: 
1	DataSets for Paper-Patent comparison}
Three datasets for paper/patent related data.
All files are in Excel format. The initial dataset is located first. 
Then selected subset and calculations are generated. 
1.1	 Article/patent ratio according to Global Innovation Index}
World Bank declared this dataset is classified as Public under the Access to Information Classification Policy under Definition: Scientific and technical journal articles refer to the number of scientific and engineering articles published in a lot of fields. Scientific and technical article counts are from journals classified by the Institute for Scientific Information's Science Citation Index (SCI) and Social Sciences Citation Index (SSCI).
We isolated two codes: 
1.	WIPO, Patent applications, residents indicator code 2012, 
2.	SCIMAGO, Scientific and technical journal articles indicator code 2015

Dutta, S., Lanvin, B., Wunsch-Vincent, S., 2020. Global innovation index 2020. WIPO, Johnson Cornell University. 
URL: https://www.globalinnovationindex.org/about-gii.

1.2	Article - patent ratio according to Global Innovation Index} 
All classifications and numbers are per country GDP. We focus on three items:
1.	PCT patents by origin/bn PPP USD GDP, 
2.	Scientific and technical articles/bn PPP USD GDP and 
3.	Citable documents H-index
OECD, 2014. Patents by main technology and by international patent classification (ipc) URL:  https://www.oecd-ilibrary.org/content/data/data-00508-en  , 
doi: https://doi.org/10.1787/data-00508-en 

1.3	Article Patent Ratio according European Patent office
Scientific and technical journal articles - tcdata360. URL: https://tcdata360.worldbank.org/indicators/IP.JRN.ARTC.SC?country=BRA&indicator=2015&viz=line_chart&years=2003,2016  .
Download link https://tcdata360-backend.worldbank.org/api/v1/datasets/56/dump.csv
DOI: 10.17632/n4f6hc8757.1
title: Effect of high and how frequency ultrasound on foods (enzyme activity, polyphenolic compounds and antioxidant activity)

description: Thermal processes are conventional techniques used in the preservation of fruit juices. However the heat leads to the destruction of some bioactive compounds, which have important health benefits. The use of New emerging technologies, including Ultrasound aims at increase shelf-life of  a food product while keeping their nutritional value and bioactive compounds. The use of low frequency has been investigated but it has some limitations. High frequency ultrasound appears to be a novel area of importance in the food industry, including for the preservation of fruit juices.

Raw data were collected from laboratory experiments (using ultrasound apparatus, different sonication parameters) or generated by analytical equipment (time-resolved fluorescence spectroscopy, spectrophotometry). Raw data were further used to calculate secondary data (e.g. percentage of residual enzyme activity, total polyphenolic content, antioxidant activity) and to perform statistics analysis.
DOI: 10.17632/v9v5sczk2v.1
title: ASE optimization by RSM for lipid profile of mozzarella cheese

description: A novel Accelerated Solvent Extraction (ASE) procedure, combined with Ultra-High Liquid Chromatography Orbitrap Mass Spectrometry (UHPLC-Q-Orbitrap-MS) identification provided a detailed lipidomic profile of mozzarella cheese. Response Surface Methodology (RMS), obtained from a Central Composite Design (CCD) was employed to define the optimized combination of extraction temperature, number of extraction cycles and solvent mixture (cyclohexane, methyl-tert-butyl ether and isopropanol). From response surfaces analysis, it can be affirmed that the main dependence of extraction efficiency is linked to the percentage of solvents in the mixture. Furthermore, comparing ASE extraction with Folch procedure, it is possible to affirm that they are complementary for the complete recovery of lipid classes.
DOI: 10.17632/txx9zkbd2g.2
title: Coupling genetic and mechanistic models to benchmark selection strategies for feed efficiency in dairy cows: Sensitivity analysis validating this novel approach

description: Due to the scarcity of feed efficiency datasets in dairy cattle, using simulated datasets is an option to explore the relevance of breeding strategies under different environments. This data capitalizes on a mechanistic model that simulates phenotypic trajectories of dairy cows over their lifetime under different nutritional environments (Puillet et al., 2016; Puillet et al., 2021). Four input parameters are assumed to be under genetic control. The nutritional environment can also be tailored by users to describe existing and prospective scenarios. 
There is a need to explore the influence of genetic parameters assumed as inputs in the model on the simulation outputs, as well as potential interactions between genetic parameters and the assumed environment.
The datasets simulated with the programs herewith formed the basis of a sensitivity analysis. Milk production and feed efficiency traits were simulated in populations of cows with pedigree structure. Different scenarios were considered by varying input genetic parameters (heritability and phenotypic coefficient of variation) and the nutritional environment (feed offer).
We identified genetic parameters to consider as inputs in the model to simulate milk production and feed efficiency traits of populations of cows with realistic means and genetic (co)variances. The nutritional environment was the input parameter with the highest influence on genetic correlations among simulated traits. This simulation tool is promising to benchmark selection strategies for feed efficiency in dairy cows under various nutritional environments.

This data comprises a compiled executable and a suite of scripts to launch the simulations, estimate genetic parameters and carry out statistical analyses.
DOI: 10.17632/vrt3wdnf6y.2
title: PAICE Suite Analysis of Coding and Non-Coding Genes in Macrophages

description: Supplemental File 1 contains the ECHO analysis of all macrophage protein-coding RNAs. Supplemental File 2 contains the ECHO analysis of all macrophage proteins. Supplemental File 3 contains the list of proteins that required manual identification or deletion preceding analysis. Supplemental File 4 contains the ENCORE analysis of all macrophage protein-coding RNAs. Supplemental File 5 contains the ENCORE analysis of all macrophage proteins. Supplemental File 6 contains the MOSAIC analysis of the comparison between mRNA and protein. Supplemental File 7 contains raw TPM values of detected ncRNA. Supplemental File 8 contains the ECHO analysis of the ncRNA categories for pseudogenes and snoRNA. Supplemental File 9 contains the ECHO analysis of the ncRNA category for lncRNA. Supplemental File 10 contains a list of the circadian, disease-associated mouse lncRNAs analyzed using the LncRNADisease v2.0 database and their human orthologs. Supplemental File 11 contains the list of spliceosomal genes adapted from KEGG (Kyoto Encyclopedia of Genes and Genomes) to identify the spliceosomal transcripts and proteins in the spliceosomal complexes. Supplemental File 12 contains the ECHO analysis of the ncRNA category for snRNA. Supplemental File 13 contains the NCBI annotation of all snRNAs.
DOI: 10.17632/wy8836cdds.1
title: Chronotype in BD

description: The dataset was built for investigating the clinical characteristics of subjects suffering from BD, with particular interest in chronotype and circadian rhythms.
DOI: 10.17632/xhvxvd2jdg.1
title: Dataset on crime rates, homicide rates and legal firearm sales/background checks

description: The dataset details rates of crime, homcide, firearm homicide and firearm sales/background checks nationally and by state for the years 1999-2015

Crime rates including overall Violent Crime, Murder, Robbery, Rape, Aggravated Assault, overall Property Crime, Burglary, Larceny and Vehicle Theft at the national and individual state level from 1999-2015 were collected from the United States Department of Justice Uniform Crime Report.

Homicide and Firearm Homicide rates were collected from the US Centers for Disease Control and Prevention.

Firearm background checks (as a surrogate for legal firearm sales) were collected from the US Federal Bureau of Investigation National Instant Criminal Background Check System
DOI: 10.17632/694vs8nmgp.2
title: 2022 Molecules MgTptmX

description: Research support data for publication
DOI: 10.17632/zcrknt4h4z.1
title: Residual feed intake in peripartal dairy cows is associated with differences in milk fat yield, ruminal bacteria, biopolymer hydrolyzing enzymes, and circulating biomarkers of immunometabolism

description: Supplemental Table S1. Ingredient composition of TMR diets fed during close-up (-28 d to calving) and fresh (from 1 to 28 DIM) periods in the 5 different published studies used for residual feed intake (RFI) evaluation. Supplemental Table S2. Nutrient composition and energy density (NRC, 2001) of TMR diets fed during close-up (-28 d to calving) and fresh (from 1 to 28 DIM) periods in the 5 different published studies used for residual feed intake (RFI) evaluation. Supplemental Table S3. Species-specific primers for the quantification of 17 key ruminal bacteria by quantitative RT-PCR assay in least-efficient and most-efficient multiparous Holstein dairy cows during prepartal and early lactation periods. Supplemental Table S4. Milk yield and composition in least-efficient (L-eff) and most-efficient (M-eff) multiparous Holstein dairy cows during the first 30 d of lactation in the subset used for blood plasma biomarker analyses. Supplemental Table S5. Milk yield and composition in least-efficient (L-eff) and most-efficient (M-eff) multiparous Holstein dairy cows during the first 30 d of lactation in the subset used for ruminal digesta sampling for measuring biopolymer degrading enzyme activities.
DOI: 10.17632/r5pmd9xktx.2
title: Achievement and electrochemical responsiveness of advanced boron-doped ultrananocrystalline diamond on highly ordered titanium dioxide nanotube 

description: these data refer to the article named "Achievement and electrochemical responsiveness of advanced boron-doped ultrananocrystalline diamond on highly ordered titanium dioxide nanotube ", therefore, the methodologies used to obtain them are described in the work, as well as the additional methodologies for obtaining the composite under analysis.
DOI: 10.17632/tx6vmd4g9p.2
title: Environmental Due Diligence Data

description: Environmental due diligence data consists of data evaluating environmental conditions and preparing remedial plans in accordance with the guidelines by regulatory bodies to help in determining the impact on the environment due to contamination.