cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vccy2x
title: Occurrence Download

description: A dataset containing 2381 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saururus chinensis (Lour.) Baill."
 ]
}

 The dataset includes 2381 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019721-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/kk53h8pt5v.1
title: Source data for A generative artificial intelligence approach for antibiotic optimization

description: Source data for paper "A generative artificial intelligence approach for antibiotic optimization"

Folder Heatmaps_of_APEX_predictions_for_intermediate_optimized_variants_all contains the predicted MICs for the template, the endpoint (the final optimized peptide), and the intermediate peptides between the template and the endpoint.

avg_improvement_rate.csv: Bacterial strain-wise average mean MIC improvement rate for each template optimization.

avg_MIC_fold_change.csv: Bacterial strain-wise average MIC log-fold change for each template optimization.
DOI: 10.15468/dl.kejwm7
title: Occurrence Download

description: A dataset containing 6525 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nelumbo nucifera Gaertn."
 ]
}

 The dataset includes 6525 records from 238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019722-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/npdjr2xkks.1
title: COLIBACILOSIS EN POLLOS BROILER

description: La colibacilosis, causada por Escherichia coli patógena aviar (APEC), es una enfermedad que afecta significativamente a los pollos de engorde. Nuestra hipótesis sostiene que su incidencia está relacionada con factores ambientales y de manejo inadecuado, perjudicando el desarrollo y la productividad de las aves. Los datos recopilados incluyen información sobre la prevalencia de E. coli, condiciones ambientales (como humedad, temperatura, ventilación y densidad poblacional), datos clínicos (síntomas, mortalidad, morbilidad y ganancia de peso) y pruebas microbiológicas para identificar genes de virulencia y resistencia antimicrobiana. Estos datos se obtuvieron mediante observaciones directas en granjas comerciales, análisis microbiológicos de muestras biológicas y encuestas sobre prácticas de manejo y uso de antibióticos.

Los hallazgos revelaron que la colibacilosis era más prevalente en galpones con alta densidad poblacional y ventilación deficiente, factores que generaban estrés en las aves. Además, se detectaron aislamientos de E. coli con genes de resistencia a antibióticos comunes y una correlación negativa entre la infección y la ganancia de peso. Estos resultados destacan la necesidad de mejorar las condiciones ambientales y reducir el uso indiscriminado de medicamentos. Los datos pueden usarse para diseñar estrategias de control, optimizar la bioseguridad, capacitar a los productores en manejo preventivo e investigar alternativas como probióticos o vacunas, mitigando las pérdidas económicas y mejorando el bienestar animal.
DOI: 10.15468/dl.mwfkhe
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Batrachium divaricatum (Schrank) Wimm."
 ]
}

 The dataset includes 160 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019724-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18141/2589875
title: CCSI Toolset 3.20 Release

description: CCSI Toolset 3.20 Release Highlights

Minimum Viable Product surrogate plugin was added for creating Machine Learning/Artificial Intelligence models. Corresponding documentation was added for the plugin.

Sequential Design of Experiments plots were updated to eliminate an issue with the window stack ordering upon closure of the plots.

Support for Python 3.7 was removed. Documentation was improved by adding new mandatory section to the ReadTheDocs configuration and adding installation instructions back for NLOpt.

TurbineLite was updated to 3.0.0, which is compatible with SimSinter 3.0.0. The developer environment was updated and 32-bit support was removed.

SimSinter was updated to 3.0.0. This version removed gPROMS support and included security updates.
DOI: 10.15468/dl.8bepyg
title: Occurrence Download

description: A dataset containing 2745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "TaxonKey is Meles meles"
 ]
}

 The dataset includes 2745 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033238-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/6j5d-nb96
title: Mesophotic and Deep Benthic Communities: Mesophotic Fish and Coral Presence, Absence, and Density Data in the Northeast Gulf of Mexico from 2018-04-18 to 2020-08-04 (NCEI Accession 0276878)

description: Presence, absence and density information for fish and corals in the northeast Gulf of Mexico and the West Florida shelf. Data was collected from three different projects over a two-year period from 2018-2020. The Deepwater Horizon Natural Resource Damage Assessment, Open Ocean Trustee Implementation Group’s Mesophotic and Deep Benthic Communities Restoration: Coral Propagation Technique Development (CPT) Project funded re-analysis of previously collected, separately funded ROV video surveys for acquisition of relevant coral and sponge presence, absence, and density data, and performed a quality assurance/quality check prior to submitting the data to NCEI. Data is formatted into two Excel spreadsheets, one with observations and one with absence data. This data package also includes representative images for each site taken from ROV video.

This dataset was generated by William F. Patterson III, University of Florida (UF) during ROV surveys undertaken to monitor Lionfish trap sites and to perform a count of Red Snapper at designated areas. The corresponding video was then analyzed for corals and sponges by Joe Tarnecki at UF. The coral and sponge data in this accession were funded by the Mesophotic and Deep Benthic Communities Restoration: Coral Propagation Technique Development (CPT) project. Members of the CPT Project performed a quality check on the annotations prior to submission to NCEI.
DOI: 10.15468/dl.uqek74
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxychilus allarius",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033239-250920141307145/datasets/export for details.
DOI: 10.25921/7c57-gf98
title: Total microcystins, chlorophyll, and other water quality data collected in Lake Erie from 2013-06-18 to 2024-10-22 (NCEI Accession 0276941)

description: Water sample data collected and curated by Ohio State University's Stone Laboratory and others between 2013 and 2024 in Lake Erie. The samples were collected in part of several projects funded by various state (Ohio EPA and Ohio Sea Grant) and federal agencies (US EPA, NSF, NIH, NOAA). The program column describes who or why the samples were collected. The captains program is a partnership between Stone Lab and the Lake Erie Charter Boat Association in which the captains collect water samples and Stone Lab analyzes them (https://ohioseagrant.osu.edu/products/4c0k6/charter-boat-captains-help-monitor-lake-erie-water-quality). The SL Buoy program is a high temporal resolution dataset of grab samples paired with a high temporal resolution sonde data attached to a buoy (https://doi.org/10.1007/s11356-018-2612-z). The HABs Grab were high spatial resolution samples collected on two days during peak blooms of 2018 and 2019 (https://doi.org/10.1016/j.hal.2021.102080). The flow-through program was an attempt to collect water quality data throughout the winter by pumping lake water into the research building at Stone Lab. Programs Stone Lab and UToledo were samples collected by Stone Lab and UT Lake Erie Center from research vessels at routinely monitored locations. Samples were analyzed for chlorophyll a (an indicator of algae biomass), microcystins (a group of toxins produced by cyanobacteria), total phosphorus and nitrogen (indicators of maximum biomass potential), dissolved nitrate, phosphate, and silicate (nutrients available for algae), and total suspended solids (mass of all particulates in the water).
DOI: 10.15468/dl.ct37y3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ortygornis pondicerianus",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033240-250920141307145/datasets/export for details.
DOI: 10.18141/2589876
title: CCSI Toolset 3.21 Release

description: CCSI Toolset 3.21 Release Highlights

Parallelization support was added for Sequential Design of Experiments (SDOE) computations using Dask (preliminary). Input type dependent ordering capability was added to the SDOE module. With this implementation the user can specify the level of difficulty to change an input (Easy or Hard) and FOQUS will generate the appropriate ordered design depending on the input difficulty combination.

Python version support was extended. FOQUS is now compatible with Python 3.8 through 3.12.

Platforms used for automated testing were expanded to include macOS ARM (Apple Silicon).

Updates to the FOQUS documentation to include information on how to set paths for SimSinter and TurbineLite. Turbine configuration section was added to Debugging Documentation.
DOI: 10.5281/zenodo.17234726
title: chlamydosaurus_kingii_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.17234725
title: chlamydosaurus_kingii_decontaminated_FSCR.fasta.gz
DOI: 10.18141/2589877
title: CCSI Toolset 3.22 Release

description: CCSI Toolset 3.22 Release Highlights

The Sequential Design of Experiments user interface was updated to resolve an issue where the results would fail to plot in some cases (e.g., Non-Uniform Space Filling designs). 

The Machine Learning/Artificial Intelligence module was updated to support Keras 3 and to reflect changes made to dependencies’ syntax.

A check was added to ensure PSUADE is installed and available at FOQUS startup. If PSUADE is not installed, a link to the FOQUS documentation is displayed and FOQUS is closed.

The copyright year was updated to include 2024 in places where it had not previously been updated. Typographical errors were corrected to improve clarity in variable names and documentation. The FOQUS documentation was updated to reflect the fact that ALAMO can have two executables and indicates the correct executable to add to the Settings path.

SimSinter was updated to version 3.1.0. This version removed gPROMS support and included security updates.
DOI: 10.15468/dl.w92e5y
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis edwardii"
 ]
}

 The dataset includes 41 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033242-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97pg6p
title: Occurrence Download

description: A dataset containing 814285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is FRA.11_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Asteraceae"
 ]
}

 The dataset includes 814285 records from 699 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033164-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/ezjd-w264
title: GNSS Radio Occultation Soundings from Airbus Commercial Aircraft; 2017-2019 (NCEI Accession 0285660)

description: This data consists of both level 1 (time series) and level 2 (vertical profiles) in-atmosphere radio occultation (RO) data retrieved from various Airbus commercial aircraft. Raw level 1 time series observables include receiver position and velocity vectors, transmitter position and velocity vectors, signal-to-noise ratio, excess phase, and excess Doppler shift. Level 2 vertical profile observables are the result of either geometric optics or radio-holographic radio occultation retrievals on time series data, resulting in profiles of bending angle (impact parameter space) and refractivity (height space). ERA5 data provided are derived from model level thermodynamic data from which refractivity was calculated and bending angle profiles were simulated for comparison to RO retrievals.
DOI: 10.15468/dl.gu5kg5
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vitrea contracta",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033244-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmhyc9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vitrea contracta",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033243-250920141307145/datasets/export for details.
DOI: 10.15468/dl.k5nbw4
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vitrea contracta",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033245-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4zun26
title: Occurrence Download

description: A dataset containing 3083 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "TaxonKey is Meles meles"
 ]
}

 The dataset includes 3083 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033246-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ajnvg7
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Francolinus pintadeanus",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033247-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/hzzjgl/g0u3gq
title: Supplement Patterns of TM Use R&R_250904.docx

description: Supplementary draft_R&R1
DOI: 10.25625/hzzjgl/rnubsz
title: Supplement Patterns of TM Use R&R_250918.docx

description: Supplementary draft_R&R1
DOI: 10.25625/hzzjgl/czqtio
title: Supplement information_use of TM_30092025.docx

description: Supplementary document
DOI: 10.25625/hzzjgl
title: Documentation for: Patterns of Traditional Medicine use for the treatment of Hypertension, Diabetes Mellitus, and High Cholesterol in Low and Middle-income Countries: a cross-sectional study of 71 nationally representative surveys

description: Supplementary documents
DOI: 10.21227/fd64-0p49
title: "Occluded nuScenes: A Multi-Sensor Dataset for Evaluating Perception Robustness in Automated Driving"

description: "Robust perception in automated driving requires reliable performance under adverse conditions, where sensors are often affected by partial failures, blockages, or environmental occlusions. While existing benchmarks primarily provide clean multi-sensor data, no publicly available dataset currently applies systematic and realistic occlusions across camera, radar, and LiDAR modalities. This gap limits the ability to evaluate how perception and fusion architectures degrade under challenging conditions. To address this, we introduce the Occluded nuScenes Dataset, a novel extension of the widely used nuScenes benchmark. For the camera modality, we release both the full and mini versions with four types of occlusions (two adapted from public implementations and two novel designs). For radar and LiDAR, we provide parameterised occlusion scripts that implement three types of degradations each, enabling the flexible generation of occluded data. This resource allows consistent and reproducible evaluation of perception models under partial sensor failure and environmental interference. By releasing the first multi-sensor occlusion benchmark, we aim to accelerate research on robust sensor fusion, resilience analysis, and safety-critical perception in automated driving."
DOI: 10.15468/dl.2wykat
title: Occurrence Download

description: A dataset containing 722393 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 "year",
 GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)) eeacellcode,
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)), "year")) kingdomcount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'BE'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (CAST(occurrence.taxonkey AS INTEGER) = 6 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 6 OR CAST(occurrence.kingdomkey AS INTEGER) = 6 OR CAST(occurrence.phylumkey AS INTEGER) = 6 OR CAST(occurrence.classkey AS INTEGER) = 6 OR CAST(occurrence.orderkey AS INTEGER) = 6 OR CAST(occurrence.familykey AS INTEGER) = 6 OR CAST(occurrence.genuskey AS INTEGER) = 6 OR CAST(occurrence.specieskey AS INTEGER) = 6)
 AND (occurrence."year" &gt;= 1900 AND occurrence."year" &lt;= 2025)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.phylumkey IS NOT NULL AND occurrence."year" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence."year",
 GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000))

 The dataset's 722393 records were derived from 229 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033226-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/kte7-d058
title: Water temperature taken by XBT from the research vessel Laura Bassi in the Southern Ocean (&gt; 60 degrees South) and Southwest Pacific Ocean (limit-147 E to 140 W) from 2023-01-06 to 2023-01-12 (NCEI Accession 0297163)

description: Vertical temperature profiles were collected from January 6th 2023 to January 12th 2023 from the research vessel Laura Bassi during an oceanographic cruise between New Zealand and the Ross Sea in the framework of the Marine Observatory in the Ross Sea (MORSea) project of the Italian National Antarctic Research Programme (PNRA). Sippican T7 Expendable Bathythermograph (XBT) probes with a vertical resolution of 65 cm and a maximum nominal depth of 760 m were used. The mean spatial resolutions ranges between 15 nm and 20 nm, according to the specific part of the cruise. XBT launches might have been interrupted in case of severe sea and weather conditions. This implies the possible presence of gaps in the sampling. All temperature profiles are quality controlled for consistency between adjacent profiles and through spike editing. Data are provided in TXT format.
DOI: 10.25921/aeg5-hw87
title: Water temperature taken by XBT from the research vessel Laura Bassi in the Southern Ocean (&gt; 60 degrees South) and Southwest Pacific Ocean (limit-147 E to 140 W) from 2020-12-25 to 2021-01-02 (NCEI Accession 0297164)

description: Vertical temperature profiles were collected from December 25th 2020 to January 2nd 2021 from the research vessel Laura Bassi during an oceanographic cruise between New Zealand and the Ross Sea in the framework of the Marine Observatory in the Ross Sea (MORSea) project of the Italian National Antarctic Research Programme (PNRA). Sippican T7 Expendable Bathythermograph (XBT) probes with a vertical resolution of 65 cm and a maximum nominal depth of 760 m were used. The mean spatial resolutions ranges between 15 nm and 20 nm, according to the specific part of the cruise. XBT launches might have been interrupted in case of severe sea and weather conditions. This implies the possible presence of gaps in the sampling. All temperature profiles are quality controlled for consistency between adjacent profiles and through spike editing. Data are provided in TXT format.
DOI: 10.25921/3mmd-tj60
title: Water temperature taken by XBT from the research vessel Laura Bassi in the Southern Ocean (&gt; 60 degrees South) and Southwest Pacific Ocean (limit-147 E to 140 W) from 2022-01-08 to 2022-01-26 (NCEI Accession 0297165)

description: Vertical temperature profiles were collected from January 8th 2022 to January 26th 2022 from the research vessel Laura Bassi during an oceanographic cruise between New Zealand and the Ross Sea in the framework of the Marine Observatory in the Ross Sea (MORSea) project of the Italian National Antarctic Research Programme (PNRA). Sippican T7 Expendable Bathythermograph (XBT) probes with a vertical resolution of 65 cm and a maximum nominal depth of 760 m were used. The mean spatial resolutions ranges between 15 nm and 20 nm, according to the specific part of the cruise. XBT launches might have been interrupted in case of severe sea and weather conditions. This implies the possible presence of gaps in the sampling. All temperature profiles are quality controlled for consistency between adjacent profiles and through spike editing. Data are provided in TXT format.