cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4696441.v1
title: Data from: Non-destructive estimation of above-ground surface and near-surface biomass using 3D terrestrial remote sensing techniques

description: Data sets used in the research described in Wallace et al. (2017). Data includes:<br>1. <b>Sample Dry Weights</b>: Dry weights (tonnes/ha) of near surface vegetation (&lt; 25 cm in height) collected in four land cover types in Victoria, Australia. Ten circular 0.15m radius samples were randomly located within one 10 m radius plot for each landcover type. Samples were mulched and weighed. 100g subsamples were then extracted and dryed following NSW DPI (2004). The relative decrease in weight was then applied to the total sample given the final dry weight expressed. <br>2. <b>Image based point clouds</b> produce using 12 downward looking images collected with an Panasonic FMC-FZ100 camera over a small (0.15 m radius) samples. Images were processed in Agisoft Photoscan using the high accuracy setting for image matching and high quality setting for dense cloud reconstruction.<br>3. <b>TLS point clouds</b> captured using a FARO Focus 3D x130 Terrestrial Laser Scanner. Four scans merged using ground control spheres and clipped to the area of each sample as described in the manuscript. <br>References<br>NSW DPI (2004) Silage note no. 7, measuring the dry matter content of forages. http://www.dpi.nsw.gov.au/__data/assets/pdf_file/0007/229291/silage-note-7-measuring-the-dry-matter-content-of-forages.pdf<br>
DOI: 10.6084/m9.figshare.4696408
title: Tree mortality data

description: This dataset provides information on the mortality of trees in Denny wood in the New Forest, southern England in 1984-2014.
DOI: 10.6084/m9.figshare.4696408.v1
title: Tree mortality data

description: This dataset provides information on the mortality of trees in Denny wood in the New Forest, southern England in 1984-2014.
DOI: 10.6084/m9.figshare.4696297
title: Program

description: Program for Fig. 5b
DOI: 10.6084/m9.figshare.4696297.v1
title: Program

description: Program for Fig. 5b
DOI: 10.6084/m9.figshare.4696267
title: Trinexapac-ethyl Rate Response Data

description: The data presented is from an experiment evaluating the response of bermudagrass off-types and cultivars to increasing rates of the plant growth regulator, trinexapac-ethyl. Rates included 0, 1.6, 3.3, 6.6, 13.1, 26.3, 52.6, or 105.2 g active ingredient per hectare. Grass samples included three, morphologically distinct off-type grasses and bermudagrass cultivars Champion, MiniVerde, and TifEagle. The response variable is clipping weight expressed as mg per square cm. The experiment was a completely randomized design with grass sample and trinexapac-ethyl rate in a factorial treatment arrangement. Clippings were harvested 7, 14, 21, and 28 days after treatment and was included in the analysis as a repeated measure.
DOI: 10.6084/m9.figshare.4696264
title: Nitrogen Rate Response Data

description: The data presented is from an experiment evaluating the response of bermudagrass off-types and cultivars to increasing rates of nitrogen fertilizer. Rates included 0, 6, 12, 18, 24, or 48 kg nitrogen per hectare per week for four consecutive weeks. Grass samples included three, morphologically distinct off-type grasses and bermudagrass cultivars Champion, MiniVerde, and TifEagle. The response variable is clipping weight expressed as mg per square cm. The experiment was a completely randomized design with grass sample and nitrogen rate in a factorial treatment arrangement. Clippings were harvested 7, 14, 21, and 28 days after treatment and was included in the analysis as a repeated measure.
DOI: 10.6084/m9.figshare.4696264.v1
title: Nitrogen Rate Response Data

description: The data presented is from an experiment evaluating the response of bermudagrass off-types and cultivars to increasing rates of nitrogen fertilizer. Rates included 0, 6, 12, 18, 24, or 48 kg nitrogen per hectare per week for four consecutive weeks. Grass samples included three, morphologically distinct off-type grasses and bermudagrass cultivars Champion, MiniVerde, and TifEagle. The response variable is clipping weight expressed as mg per square cm. The experiment was a completely randomized design with grass sample and nitrogen rate in a factorial treatment arrangement. Clippings were harvested 7, 14, 21, and 28 days after treatment and was included in the analysis as a repeated measure.
DOI: 10.6084/m9.figshare.4696267.v1
title: Trinexapac-ethyl Rate Response Data

description: The data presented is from an experiment evaluating the response of bermudagrass off-types and cultivars to increasing rates of the plant growth regulator, trinexapac-ethyl. Rates included 0, 1.6, 3.3, 6.6, 13.1, 26.3, 52.6, or 105.2 g active ingredient per hectare. Grass samples included three, morphologically distinct off-type grasses and bermudagrass cultivars Champion, MiniVerde, and TifEagle. The response variable is clipping weight expressed as mg per square cm. The experiment was a completely randomized design with grass sample and trinexapac-ethyl rate in a factorial treatment arrangement. Clippings were harvested 7, 14, 21, and 28 days after treatment and was included in the analysis as a repeated measure.
DOI: 10.6084/m9.figshare.4696240
title: Sound Taste Association

description: Data from:Guetta, R., & Loui, P. (2017). When Music is Salty: The Crossmodal Associations Between Sound and Taste. <i>PLoS ONE.</i>
DOI: 10.6084/m9.figshare.4696105
title: Electric vehicle owner engagement with tariff switching increased by tailored email prompts sent by government shortly after vehicle purchase: replication dataset and code

description: The Read Me file provides all information required to interpret and use the files.<br>
DOI: 10.6084/m9.figshare.4696168
title: Minimum Credence Test

description: <b>R script for Minimum Credence statistical test for comparing mixed samples. The test evaluates maximum possible population standard deviation from a reference sample and then applies this estimate to mixed samples for comparisons. </b><b>In case the reference sample is less than 8, chi-squared approximation is used to find confidence interval for population standard deviation. Otherwise, the test bootstraps corrected median absolute deviation of the reference sample to obtain bias-corrected accelerated confidence interval for population standard deviation. </b><b>This script is adapted for RFA soil analysis, but can be used elswhere if method=0. If method=1, the test extracts GOST metrological data (between-lab analytical error) from the excel file, and must be corrected for every specific analysis. </b><b>The test implies homogeniety of variances among groups, and the studied parameter must average additively (i. e. arithmetic mean of individual samples is equal to mixed sample) in order to use mixed samples.</b><br>For any questions/remarks please contact me at: fastovetsilya@yandex.ru
DOI: 10.5281/zenodo.1284434
title: Data from Figures in "Selection rules for cavity-enhanced Brillouin light scattering from magnetostatic modes"

description: Data from figures in our paper "Selection rules for cavity-enhanced Brillouin light scattering from magnetostatic modes" in Physical Review B. The figures are in an Origin file (OriginPro 2016). Matlab code (R2016b) that can be used to generate plots of the magneto-static modes is also included.
DOI: 10.5281/zenodo.1284433
title: Data from Figures in "Selection rules for cavity-enhanced Brillouin light scattering from magnetostatic modes"

description: Data from figures in our paper "Selection rules for cavity-enhanced Brillouin light scattering from magnetostatic modes" in Physical Review B. The figures are in an Origin file (OriginPro 2016). Matlab code (R2016b) that can be used to generate plots of the magneto-static modes is also included.
DOI: 10.6084/m9.figshare.4695796
title: SAR and QSAR study on the bioactivities of human epidermal growth factor receptor-2 (HER2) inhibitors

description: In this paper, structure–activity relationship (SAR, classification) and quantitative structure–activity relationship (QSAR) models have been established to predict the bioactivity of human epidermal growth factor receptor-2 (HER2) inhibitors. For the SAR study, we established six SAR (or classification) models to distinguish highly and weakly active HER2 inhibitors. The dataset contained 868 HER2 inhibitors, which was split into a training set including 580 inhibitors and a test set including 288 inhibitors by a Kohonen’s self-organizing map (SOM), or a random method. The SAR models were performed using support vector machine (SVM), random forest (RF) and multilayer perceptron (MLP) methods. Among the six models, SVM models obtained superior results compared with other models. The prediction accuracy of the best model (model 1A) was 90.27% and the Matthews correlation coefficient (MCC) was 0.80 on the test set. For the QSAR study, we chose 286 HER2 inhibitors to establish six quantitative prediction models using MLR, SVM and MLP methods. The correlation coefficient (r) of the best model (model 4B) was 0.92 on the test set. The descriptors analysis showed that HAccN, lone pair electronegativity and π electronegativity were closely related to the bioactivity of HER2 inhibitors.
DOI: 10.6084/m9.figshare.4695745
title: Portal Rodent Trapping Forecasts for February 2017

description: Predictions and 90% prediction intervals on the Portal rodent trapping results for 2/24 - 2/26/2017. Predictions are made for the next 12 months, by species and for total of all rodents, on all plots and on only the long-term controls. Details of the models used can be found at https://github.com/weecology/portalPredictions .
DOI: 10.6084/m9.figshare.4695796.v1
title: SAR and QSAR study on the bioactivities of human epidermal growth factor receptor-2 (HER2) inhibitors

description: In this paper, structure–activity relationship (SAR, classification) and quantitative structure–activity relationship (QSAR) models have been established to predict the bioactivity of human epidermal growth factor receptor-2 (HER2) inhibitors. For the SAR study, we established six SAR (or classification) models to distinguish highly and weakly active HER2 inhibitors. The dataset contained 868 HER2 inhibitors, which was split into a training set including 580 inhibitors and a test set including 288 inhibitors by a Kohonen’s self-organizing map (SOM), or a random method. The SAR models were performed using support vector machine (SVM), random forest (RF) and multilayer perceptron (MLP) methods. Among the six models, SVM models obtained superior results compared with other models. The prediction accuracy of the best model (model 1A) was 90.27% and the Matthews correlation coefficient (MCC) was 0.80 on the test set. For the QSAR study, we chose 286 HER2 inhibitors to establish six quantitative prediction models using MLR, SVM and MLP methods. The correlation coefficient (r) of the best model (model 4B) was 0.92 on the test set. The descriptors analysis showed that HAccN, lone pair electronegativity and π electronegativity were closely related to the bioactivity of HER2 inhibitors.
DOI: 10.6084/m9.figshare.4695745.v1
title: Portal Rodent Trapping Forecasts for //

description: Predictions and 90% prediction intervals on the Portal rodent trapping results for 2/24 - 2/26/2017. Predictions are made for the next 12 months, by species and for total of all rodents, on all plots and on only the long-term controls. Details of the models used can be found at https://github.com/weecology/portalPredictions .
DOI: 10.6084/m9.figshare.4695793
title: Elliott, McCright, Allen, and Dietz Data

description: The data are from two 3x2 full factorial design experiments examine how exposure to a scientist reporting values in science communication influences citizens' positive affect toward and perceived trust in the scientist.
DOI: 10.6084/m9.figshare.4695793.v2
title: Elliott, McCright, Allen, and Dietz Data

description: The data are from two 3x2 full factorial design experiments examine how exposure to a scientist reporting values in science communication influences citizens' positive affect toward and perceived trust in the scientist.
DOI: 10.6084/m9.figshare.4695715
title: Seagrass Microbiome Zen.tgz

description: This fileset includes data for the Zen project from the Seagrass Microbiome Project.<br>See seagrassmicrobiome.org for more details
DOI: 10.6084/m9.figshare.4695715.v1
title: Seagrass Microbiome Zen.tgz

description: This fileset includes data for the Zen project from the Seagrass Microbiome Project.<br>See seagrassmicrobiome.org for more details
DOI: 10.6084/m9.figshare.4695793.v1
title: Elliott, McCright, Allen, and Dietz Data (SPSS & Stata)

description: The data are from two 3x2 full factorial design experiments examine how exposure to a scientist reporting values in science communication influences citizens' positive affect toward and perceived trust in the scientist.
DOI: 10.6084/m9.figshare.4690084
title: depolarization_factors_spheroids.nb from Analytical results regarding electrostatic resonances of surface phonon/plasmon polaritons: separation of variables with a twist

description: The boundary integral equation (BIE) method ascertains explicit relations between localized surface phonon and plasmon polariton resonances and the eigenvalues of its associated electrostatic operator. We show that group-theoretical analysis of Laplace equation can be used to calculate the full set of eigenvalues and eigenfunctions of the electrostatic operator for shapes and shells described by separable coordinate systems. These results not only unify and generalize many existing studies, but also offer us the opportunity to expand the study of phenomena like cloaking by anomalous localized resonance. Hence, we calculate the eigenvalues and eigenfunctions of elliptic and circular cylinders. We illustrate the benefits of using the BIE method to interpret recent experiments involving localized surface phonon polariton resonances and the size scaling of plasmon resonances in graphene nanodiscs. Finally, symmetry-based operator analysis can be extended from electrostatic to full-wave regime. Thus, bound states of light in the continuum can be studied for shapes beyond spherical configurations.
DOI: 10.6084/m9.figshare.4690078
title: SM_DH of Martian igneous minerals from D/H ratios of the inner Solar System

description: The original hydrogen isotope (D/H) ratios of different planetary bodies may indicate where each body formed in the Solar System. However, geological and atmospheric processes can alter these ratios through time. Over the past few decades, D/H ratios in meteorites from Vesta and Mars, as well as from S- and C-type asteroids, have been measured. The aim of this article is to bring together all previously published data from these bodies, as well as the Earth, in order to determine the original D/H ratio for each of these inner Solar System planetary bodies. Once all secondary processes have been stripped away, the inner Solar System appears to be relatively homogeneous in terms of water D/H, with the original water D/H ratios of Vesta, Mars, the Earth, S- and C-type asteroids, all falling between δD values of −100 and −590‰. This homogeneity is in accord with the ‘Grand Tack’ model of Solar System formation, where giant planet migration causes the S- and C-type asteroids to be mixed within 1 AU to eventually form the terrestrial planets.
DOI: 10.6084/m9.figshare.4690081
title: phonon-polariton-GaN.nb from Analytical results regarding electrostatic resonances of surface phonon/plasmon polaritons: separation of variables with a twist

description: The boundary integral equation (BIE) method ascertains explicit relations between localized surface phonon and plasmon polariton resonances and the eigenvalues of its associated electrostatic operator. We show that group-theoretical analysis of Laplace equation can be used to calculate the full set of eigenvalues and eigenfunctions of the electrostatic operator for shapes and shells described by separable coordinate systems. These results not only unify and generalize many existing studies, but also offer us the opportunity to expand the study of phenomena like cloaking by anomalous localized resonance. Hence, we calculate the eigenvalues and eigenfunctions of elliptic and circular cylinders. We illustrate the benefits of using the BIE method to interpret recent experiments involving localized surface phonon polariton resonances and the size scaling of plasmon resonances in graphene nanodiscs. Finally, symmetry-based operator analysis can be extended from electrostatic to full-wave regime. Thus, bound states of light in the continuum can be studied for shapes beyond spherical configurations.
DOI: 10.6084/m9.figshare.4690084.v1
title: depolarization_factors_spheroids.nb from Analytical results regarding electrostatic resonances of surface phonon/plasmon polaritons: separation of variables with a twist

description: The boundary integral equation (BIE) method ascertains explicit relations between localized surface phonon and plasmon polariton resonances and the eigenvalues of its associated electrostatic operator. We show that group-theoretical analysis of Laplace equation can be used to calculate the full set of eigenvalues and eigenfunctions of the electrostatic operator for shapes and shells described by separable coordinate systems. These results not only unify and generalize many existing studies, but also offer us the opportunity to expand the study of phenomena like cloaking by anomalous localized resonance. Hence, we calculate the eigenvalues and eigenfunctions of elliptic and circular cylinders. We illustrate the benefits of using the BIE method to interpret recent experiments involving localized surface phonon polariton resonances and the size scaling of plasmon resonances in graphene nanodiscs. Finally, symmetry-based operator analysis can be extended from electrostatic to full-wave regime. Thus, bound states of light in the continuum can be studied for shapes beyond spherical configurations.
DOI: 10.6084/m9.figshare.4690072
title: Electrostatic_resonance_disk_1-100_1-5.nb from Analytical results regarding electrostatic resonances of surface phonon/plasmon polaritons: separation of variables with a twist

description: The boundary integral equation (BIE) method ascertains explicit relations between localized surface phonon and plasmon polariton resonances and the eigenvalues of its associated electrostatic operator. We show that group-theoretical analysis of Laplace equation can be used to calculate the full set of eigenvalues and eigenfunctions of the electrostatic operator for shapes and shells described by separable coordinate systems. These results not only unify and generalize many existing studies, but also offer us the opportunity to expand the study of phenomena like cloaking by anomalous localized resonance. Hence, we calculate the eigenvalues and eigenfunctions of elliptic and circular cylinders. We illustrate the benefits of using the BIE method to interpret recent experiments involving localized surface phonon polariton resonances and the size scaling of plasmon resonances in graphene nanodiscs. Finally, symmetry-based operator analysis can be extended from electrostatic to full-wave regime. Thus, bound states of light in the continuum can be studied for shapes beyond spherical configurations.
DOI: 10.6084/m9.figshare.4690075
title: ESM 2 from Living in stable social groups is associated with reduced brain size in woodpeckers (<i>Picidae</i>)

description: Woodpecker brain size and social organization data
DOI: 10.6084/m9.figshare.4690075.v1
title: ESM 2 from Living in stable social groups is associated with reduced brain size in woodpeckers (<i>Picidae</i>)

description: Woodpecker brain size and social organization data
DOI: 10.6084/m9.figshare.4689910
title: Systemic effects of nonylphenol on tadpoles of Lithobates catesbeianus: gonadal, genotoxic and color alterations

description: Endocrine disrupting chemicals (EDCs) are one of the most important factors contributing to worldwide amphibian decline since they alter hormonal regulation, affecting reproduction and development of organisms. One of the most used estrogenic compounds is the 4-nonylphenol (NP), which is a degradation product of lubricants, antioxidants, detergents, paints, and pesticides such as insecticides and herbicides. Here, we conducted an experiment to test the effects of NP on oogenesis, blood cell abnormalities, and body darkness of pre-metamorphic tadpoles of Lithobates catesbeianus. Tadpoles were exposed for 14 days to three concentrations of NP (1 µg/L, 10 µg/L, and 100 µg/L). Even though most animals were females, with ovarian-like cavity, oocytes or oogonia, intersex tadpoles were observed in control and treated groups. We found atretic oocytes in treated groups, characterized by nuclear picnosis, cytoplasmic retraction, and vacuolization. We found that NP increased body darkness and that it had genotoxic effects, increasing the number of nuclear abnormalities in erythrocytes. These results suggest that oogenesis can be disrupted or altered by exposure to NP, and that pigmentation can be used as a biomarker of exposure to this compound.<br>
DOI: 10.6084/m9.figshare.4690015
title: Scrub-jay colour caching

description: Raw data for Californian scrub-jays caching coloured food in substrates of matching or non-matching colour.<br>
DOI: 10.6084/m9.figshare.4689859
title: Supplementary Material for: Risk Factors for the Development of Fistulae and Stenoses in Crohn Disease Patients in the Swiss Inflammatory Bowel Disease Cohort

description: <b><i>Background:</i></b> Fistulae and stenoses represent frequent and severe complications in patients with Crohn disease (CD). Our study aimed to identify risk factors for fistula and stenosis formation in CD patients. <b><i>Summary:</i></b> We retrieved data of 1,600 CD patients from the nationwide Swiss Inflammatory Bowel Disease Cohort Study (SIBDCS). The risk for fistulae and stenoses in relation to gender, age at diagnosis, smoking status at diagnosis, and ileal involvement at diagnosis were analyzed. In the multivariate analysis, female gender showed a lower risk for developing perianal and any fistula (risk ratio [RR] 0.721, 95% confidence interval [CI] 0.582-0.893, <i>p</i> = 0.003 and RR 0.717, 95% CI 0.580-0.888, <i>p</i> = 0.002, respectively), and older age at diagnosis showed a lower risk for developing perianal fistula (RR 0.661, 95% CI 0.439-0.995, <i>p</i> = 0.047). Furthermore, ileal involvement was associated with a lower risk for perianal fistula (RR 0.713, 95% CI 0.561-0.906, <i>p</i> = 0.006), a lower risk for any fistula (RR 0.709, 95% CI 0.558-0.901, <i>p</i> = 0.005), and a higher risk for stenosis (RR 2.170, 95% CI 1.728-2.725, <i>p</i> &lt; 0.001). <b><i>Key Messages:</i></b> In the nationwide SIBDCS, younger age at diagnosis and male gender were risk factors for developing perianal and nonperianal fistulae. Additionally, ileal involvement was revealed to be a potent risk factor (RR 2.170) for developing a stenosis.
DOI: 10.6084/m9.figshare.4690015.v1
title: Scrub-jay colour caching

description: Raw data for Californian scrub-jays caching coloured food in substrates of matching or non-matching colour.<br>