cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15146/r3q37r
title: Causal Evidence for Lateral Prefrontal Cortex Dynamics Supporting Cognitive Control

description: The lateral prefrontal cortex (LPFC) is essential for higher-level
 cognition, but how its interactions support cognitive control remains
 elusive. Previously (Nee and D'Esposito, 2016), dynamic causal
 modeling (DCM) indicated that mid LPFC integrates abstract, rostral and
 concrete, caudal influences to inform context-appropriate action. Here, we
 use continuous theta-burst transcranial magnetic stimulation (cTBS) to
 causally test this model. cTBS was applied to three LPFC sites and a
 control site in counterbalanced sessions. Behavioral modulations resulting
 from cTBS were largely predicted by information flow within the previously
 estimated DCM. However, cTBS to caudal LPFC unexpectedly impaired
 processes presumed to involve rostral LPFC. Adding a pathway from caudal
 to mid-rostral LPFC significantly improved the model fit and accounted for
 the observed behavioral findings. These data provide causal evidence for
 LPFC dynamics supporting cognitive control and demonstrate the utility of
 combining DCM with causal manipulations to test and refine models of
 cognition.
DOI: 10.25338/b8wc70
title: Images of individual strawberries (entire fruit, flesh and calyx) with contrasting background

description: This database contains images of 258 individual strawberries with dark
 background (a setting typically encountered during post-harvest
 operations). For each strawberry, six images are provided: 1) a color
 image of the entire strawberry; 2) a color image containing only the calyx
 of the strawberry; 3) a color image containing only the flesh of the
 strawberry; 4) a binary image of the entire strawberry; 5) a binary image
 of the calyx, and 6) a binary image of the flesh.This database was
 originally created to evaluate the performance of calyx and flesh
 extraction algorithms during post-harvest operations.
description: The strawberries used in this database were harvested in August
 2016 in the region of Salinas, California, U.S.A. Then, they were stored
 for two days in a temperature-controlled chamber set at +2 degrees Celsius
 before being used for the images. The image of each strawberry was
 acquired with a dark contrasting background using a Basler aviator
 avA1900-50gc camera with a 16mm Fujinon lens. The camera’s exposure time
 was set at 2 ms. To provide consistent, uniform and adequate lighting,
 especially given the short exposure time, a set of four lights was
 installed.For each strawberry, the image areas
 corresponding to the calyx and the flesh were extracted manually using the
 GIMP software and saved as separate color images. Finally, using the
 obtained images and Matlab software, binary images of the entire fruit,
 calyx and flesh were created.
DOI: 10.6071/m3z07d
title: CoreShellShell, a quantum dot excitonic energy and charge density calculator

description: This program calculates electron and hole charge distributions for a
 spherical semiconductor quantum dot that may have up to three different
 materials in concentric shells (core-barrier-shell), each with different
 valence and/or conduction band potentials. It calculates the four lowest
 s-type (zero angular momentum) electron wavefunctions and the eight lowest
 s-type hole wavefunctions using the effective mass approximation particle
 in a sphere model. It then uses the excitons produced from these pairs of
 single-particle wavefunctions as a basis set for a configuration
 interaction calculation of the electron-hole interaction energy, resulting
 in final electron and hole densities and state energies.
DOI: 10.21223/p3/ixxw5n
title: Dataset for: High density genotyping of cultivated ullucus genebank accessions using SilicoDArT markers

description: Molecular markers dataset of 300 cultivated ullucus accessions from CIP that were genotyped with the HighDensity platform of DArTSeq markers producing 34493 SilicoDArT markers.
DOI: 10.6086/d1dt02
title: #DrawingWhileBlack

description: The hashtag #DrawingWhileBlack was started by artist, Annabelle, on
 September 15th, 2017 to celebrate the work of Black artists. The dataset
 includes 69,236 tweet ids collected 09/17/2017. Annabelle's website:
 http://sparklyfawn.tumblr.com/aboutme and Twitter profile:
 https://twitter.com/sparklyfawn
description: The tweet ids were collected using the Documenting the Now
 prototype twitter collecting tool: http://app.docnow.io/
description: In order to recreate the original tweets from the ids, the user
 will have to upload the ids into the DocNow Hydrator application. The
 Hydrator can be downloaded here: https://github.com/docnow/hydrator#readme
DOI: 10.6078/d1vd4p
title: Sequence matrix and tree files for Spatial phylogenetics of the native California flora (Thornhill et al. BMC Biology)

description: This is the DNA sequence alignment for the 1083 OTUs used
 in Thornhill et al. 2017.  We defined
 monophyletic OTUs at the finest scale possible given data
 availability and current understanding
 of the evolutionary relationships of Californian plant
 lineages. Using all 5258 species described in The Jepson
 eFlora (http://ucjeps.berkeley.edu/eflora/) as a
 starting point, a thorough literature search was undertaken to
 find molecular phylogenetic studies that had included
 California taxa. Genera were split into finer level OTUs if
 robust evidence existed for monophyly of subclades and
 representative DNA data either were available in
 GenBank or could be generated within the scope of the
 project. Genera were lumped in a few cases if
 recent evidence showed that one is nested in another. In total,
 1083 OTUs were defined to include the 5258 binomials (Table S2
  in Thornhill et al. 2017 details the OTU to which each binomial
 was assigned). 
description: This Nexus file contains the concatenated 26,993 base pair
 sequence alignment and the phylogenetic trees used in A.H. Thornhill, B.G.
 Baldwin, W.A. Freyman, S. Nosratinia, M.M. Kling, N. Morueta-Holme, T.P
 Madsen, D.D. Ackerly, and B.D. Mishler.  2017. Spatial phylogenetics of
 the native California flora.  BMC Biology 15:96 Use
 with the other Thornhill et al. (2017) data sets linked below.
DOI: 10.6078/d1qq2s
title: Modeled ranges of California plant species and scripts to run the models for Spatial phylogenetics of the native California flora (Thornhill et al. BMC Biology)

description: The species distribution modeling algorithm Maxent was used to model
 the range of each Californian species, using the cleaned
 species-level spatial dataset from Baldwin et al.
 2017. Models were fit at the species level ; each OTU’s
 range was then taken to be the union of the ranges of its
 included species. Models were fit using four
 predictor variables representing major energy- and
 water-related variables known to be important for California
 plant distributions: climatic water deficit, annual
 precipitation, mean summer maximum temperature (June–August), and
 mean winter minimum temperature (December– February) as described
 in Thornhill et al. 2017. In addition to the standard Maxent modeling
 approach, we also used a second “distance hybrid” approach to
 model the area for each species that was both
 climatically suitable and geographically close to observed
 occurrences. The distance constraint arguably increases realism
 by accounting for spatial processes such as
 dispersal limitation and metapopulation dynamics.
description: These files
 contain contain the modeled ranges of California species and the scripts
 used to generate the OTU distributions used in
 A.H. Thornhill, B.G. Baldwin, W.A. Freyman, S. Nosratinia, M.M. Kling,
 N. Morueta-Holme, T.P Madsen, D.D. Ackerly, and
 B.D. Mishler.  2017. Spatial phylogenetics of the native
 California flora.  BMC Biology 15:96.
 Models were based on the
 species-level spatial data set of Baldwin, B.G., A.H. Thornhill, W.A.
 Freyman, D.D. Ackerly, M.M. Kling, N. Morueta-Holme, and B.D. Mishler.
 2017. Species richness and endemism in the native flora of California.
 American Journal of Botany. 104: 487–501. http://www.amjbot.org/content/104/3/487.full  Data deposited at: https://doi.org/10.6078/D16K5W Use with the other Thornhill et al. (2017) data sets linked below.
DOI: 10.5061/dryad.kv1cr18
title: Data from: Cellular morphology of leg musculature in the water bear Hypsibius exemplaris (Tardigrada) unravels serial homologies

description: Tardigrades (water bears) are microscopic, segmented ecdysozoans with four
 pairs of legs. Lobopodous limbs that are similar to those seen in
 tardigrades are hypothesised to represent the ancestral state of
 Panarthropoda (Tardigrada + Onychophora + Arthropoda), and their
 evolutionary history is important to our understanding of ecdysozoan
 evolution. Equally important is our understanding of the functional
 morphology of these legs, which requires knowledge of their musculature.
 Tardigrade musculature is well documented but open questions remain. For
 example, while the muscular organisation of each trunk segment and its
 legs is unique, three of the four trunk segments are nevertheless
 relatively homonomous. To what extent, then, do leg muscles show segmental
 patterns? Specifically, which leg muscles are serially repeated and which
 are unique? The present study addresses these questions using a
 combination of techniques intended to visualise both the overall layout
 and fine structure of leg muscles in the eutardigrade
 &lt;i&gt;Hypsibius exemplaris&lt;/i&gt;. In doing so, we
 propose serial homologies for all leg muscles in each of the four legs and
 reveal new details of their cellular structure and attachment sites. We
 compare our results to those of previous studies and address the
 functional implications of specialised muscle cell morphologies.
description: CLSM stacks and
 segmentation labelsCLSM stacks used for
 this study together with segmentation labels that were used to generate
 the 3D reconstructions.SupplementaryFile1_CLSM_stacks_labels.zip
DOI: 10.6078/d1kx0v
title: Master spatial file for for Spatial phylogenetics of the native California flora (Thornhill et al. BMC Biology)

description: Georeferenced locality information for 1083 OTUs assembled from
  all Californian native vascular plant records from herbarium
 specimens obtained from five different online sources in August 2015: (1)
 the Consortium of California Herbaria
 (CCH, http://ucjeps.berkeley.edu/consortium/), (2) the Consortium
 of Pacific Northwest Herbaria (http://www.pnwherbaria.org), (3)
 Australia’s Virtual Herbarium (avh.chah.org.au), (4) Canadensys
 (http://www.canadensys.net), and (5) the Global Biodiversity Information
 Facility (http://www.gbif.org). Data were carefully cleaned as described
 in Baldwin et al. 2017, and combined into OTUs as described
 in Thornhill et al. 2017. For some OTUs, additional
 records could be added that were identified only to
 genus in the dataset used by Baldwin et al. 2017; the final data set
 contains 1,395,079 occurrences.
description: The full spatial data set used in:
 A.H. Thornhill, B.G. Baldwin, W.A. Freyman, S. Nosratinia,
 M.M. Kling, N. Morueta-Holme, T.P Madsen, D.D. Ackerly, and
 B.D. Mishler.  2017. Spatial phylogenetics of the native
 California flora.  BMC Biology 15:96.
 Based on the species-level
 spatial data set of Baldwin, B.G., A.H. Thornhill, W.A. Freyman, D.D.
 Ackerly, M.M. Kling, N. Morueta-Holme, and B.D. Mishler. 2017. Species
 richness and endemism in the native flora of California. American Journal
 of Botany. 104: 487–501. http://www.amjbot.org/content/104/3/487.full  Data deposited at: https://doi.org/10.6078/D16K5W Use with the other Thornhill et al. (2017) data sets linked below.
DOI: 10.15468/dl.chen4e
title: Occurrence Download

description: A dataset containing 1340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Mayetiola destructor",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2026"
 ]
}

 The dataset includes 1340 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001880-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18393297
title: DIGITAL TRANSFORMATION IN MEDICAL EDUCATION

description: At the present stage, the integration of media technologies into the digital transformation of education has become a critical issue across all fields. This process represents the integrated interaction of information and communication systems within modern education, which is highly complex and dynamically changing. The study highlights the importance of media tools in enhancing educational efficiency and adapting to new digital realities.
DOI: 10.5281/zenodo.18393298
title: DIGITAL TRANSFORMATION IN MEDICAL EDUCATION

description: At the present stage, the integration of media technologies into the digital transformation of education has become a critical issue across all fields. This process represents the integrated interaction of information and communication systems within modern education, which is highly complex and dynamically changing. The study highlights the importance of media tools in enhancing educational efficiency and adapting to new digital realities.
DOI: 10.15146/r3dm3m
title: ygrange/diskbench: disk speed measuring tool

description: Diskbench measures the speed of the disk. It's really not that complex...
DOI: 10.15468/dl.6wfuwx
title: Occurrence Download

description: A dataset containing 10047 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Haliplus immaculatus"
 ]
}

 The dataset includes 10047 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001879-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qv92dy
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Xeno-canto - Bird sounds from around the world",
 "OccurrenceStatus is Present",
 "TaxonKey is Myrmoderus ruficauda"
 ]
}

 The dataset includes 34 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001881-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7280/d1808t
title: Vegetation Change in the Natural Reserve of Orange County

description: This data set describes vegetation change in 109 areas in the Nature
 Reserve of Orange County. The authors of this data were mainly interested
 in the success of artichoke thistle (Cynara cardunculus) control, but it
 could be approached in many different ways. Surveyors identified and
 recorded more than 375 plant species from the years 1998, 2008, and 2013.
description: Methods for collection of data can be found in the linked materials named
 "Dickens and Suding Final Vegetation Change Report 2014" and
 "NROC 2008 Artichoke Thistle Sustainability Final Report."
 Clarifications have been added to the data set and are clearly marked.
DOI: 10.6071/m3s94t
title: Southern Sierra Critical Zone Observatory (SSCZO), Wolverton Creek meteorological data, soil moisture and temperature

description: Wolverton basin in Sequoia National Park is instrumented with four
 instrument clusters (site 1 through site 4) and two meteorological
 stations (Panther met and Wolverton met). Soil moisture and temperature,
 snow depth, solar radiation and meteorological data (air temperature,
 relative humidity, wind speed, wind direction and precipitation) are
 measured across the network. Snow depth is measured in the open, at the
 drip edge and under tree canopies. Soil moisture and temperature are
 measured at 10, 30, 60 and 90 cm depths. Raw data have been processed to
 level 1 (QA/QC) data. Time period: wy2007 through wy2016.
description: Soil volumetric water content (VWC) and soil temperature are
 measured using Campbell Scientific CS 616 Water Content Reflectometer and
 107 temperature probe at depths of 10, 30 and 60 cm below the mineral soil
 surface (http://www.campbellsci.com/documents/manuals/). Soil water matric potential (MPS) is measured using Decagon Devices MPS-1 dielectrical water potential sensor at depths of 10 30 and 60 cm below the mineral soil surface ( http://www.decagon.com/products/discontinued-products/mps... ). Distance to snow/soil surface and air temperature are measured with Judd Communications ultrasonic depth sensor, using analog control ( http://www.juddcom.com/ ). Total solar radiation is measured using LI-COR Environmental LI-200 Pyranometer ( http://www.licor.com/env/products/light/pyranometer.jsp ). Net radiation is measured using Kipp & Zonen NR Lite net radiometer (http://www.kippzonen.com/?product/3151/NR+Lite2.aspx ). Relative humidity and air temperature are measured using Campbell Scientific HMP45C probe ( http://www.campbellsci.com/documents/manuals/hmp45c.pdf ). Wind speed and direction is measured using Campbell Scientific R.M. Young 05103-5 Wind Monitor ( http://www.campbellsci.com/documents/manuals/05103.pdf ). Rainfall is measured using Campbell Scientific TE525 Tipping Bucket Rain Gage (http://www.campbellsci.com/documents/manuals/te525.pdf ). Data recorded at 60-minute intervals, with control and storage on Campbell Scientific CR1000 datalogger, using AM16/32B multiplexer ( http://www.campbellsci.com ). Program for data acquisition are located on UC Merced-SNRI digital library ( https://eng.ucmerced.edu/snsjho/files/MHWG/Field/SEKI/Wol... )
description: Wolverton Creek. DE: drip edge of canopy; UC: under canopy; O:
 open canopy. Time zone: Pacific Standard
 Time. Please see README and
 Providence_met_soil_snow_metadata.xml for additional information
DOI: 10.6078/d1k08k
title: Salmon Creek Watershed Stable Isotope Data

description: Stable isotope (O and H) data collected from stream pools, piezometers,
 springs, and wells in the Salmon Creek watershed in 2014 and 2016.
description: Samples were collected using a peristaltic pump, stored frozen,
 and analyze at the UC Berkeley Stable Isotope Biogeochemistry Laboratory
 by IRMS.
DOI: 10.6078/d1f66n
title: Salmon Creek salmonid and habitat data 2012-14

description: Data from snorkel surveys of intermittent streams during the summer
 rearing period (May-October) and associated habitat data. Part of a
 long-term study of Fay and Tannery Creeks.
DOI: 10.6086/d14d4z
title: #MarchForBlackWomen

description: This dataset contains 18, 646 tweet ids documenting the March for Black
 Women which was held on September 30th, 2017 in Washington D.C. The
 dataset contains 2,925 tweet ids for tweets that included the hashtag
 #marchforblackwomen and 15,271 tweet ids for tweets that included the
 hashtag #M4BW. The march website is here:
 https://www.mamablack.org/march-for-black-women
description: This dataset of tweet ids was collected on October 3rd, 2017
 using the DocNow prototype twitter collecting tool http://app.docnow.io/
description: Users can convert the tweet ids back into the original tweets by
 using the DocNow Hydrator. You can download the Hydrator application here:
 https://github.com/DocNow/hydrator
DOI: 10.7280/d1zh39
title: Crystal Cove Marine Conservation Area Citizen Science Monitoring

description: Crystal Cove Conservancy operates the Crystal Cove Marine Protected Are
 Citizen Science Cruise in partnership with Newport Landing Sportfishing.
 Under the supervision of trained Crystal Cove Conservancy staff, junior
 high school and high school students collect data on fish and plankton
 biodiversity and nearshore water quality in the Crystal Cove Marine
 Conservation Area, following protocols designed in partnership with UCI
 and other researchers. See README file for more detailed information.Data
 made available in the OC Data Portal in partnership with UCI Libraries.
description: Contact Crystal Cove Conservancy for detailed protocols. Fish
 biodiversity: Used an underwater camera to perform a vertical transect
 within the kelp forest or rocky reef to look for presence or absence of 6
 key fish species. Videos available upon request. Plankton biodiversity:
 Used 3 plankton nets to perform a surface horizontal tow and identified
 presence or absence of 9 key species using a microscope. Water Quality:
 Used Van Dorn bottles to collect water from the surface to 14 meters in
 two meter intervals. Tested for temperature, salinity and pH.
DOI: 10.15146/r3467h
title: The Million Song Dataset

description: We introduce the Million Song Dataset, a freely-available collection of
 audio features and metadata for a million contemporary popular music
 tracks. We describe its creation process, its content, and its possible
 uses. Attractive features of the Million Song Database include the range
 of existing resources to which it is linked, and the fact that it is the
 largest current research dataset in our field. As an illustration, we
 present year prediction as an example application, a task that has, until
 now, been difficult to study owing to the absence of a large set of
 suitable data. We show positive results on year prediction, and discuss
 more generally the future development of the dataset.
DOI: 10.5061/dryad.q21d0b9
title: Data from: Reduced tillage, but not organic matter input, increased nematode diversity and food web stability in European long-term field experiments

description: Soil nematode communities and food web indices can inform about the
 complexity, nutrient flows and decomposition pathways of soil food webs,
 reflecting soil quality. Relative abundance of nematode feeding and
 life-history groups are used for calculating food web indices, i.e.
 maturity index (MI), enrichment index (EI), structure index (SI) and
 channel index (CI). Molecular methods to study nematode communities
 potentially offer advantages compared to traditional methods in terms of
 resolution, throughput, cost and time. In spite of such advantages,
 molecular data have not often been adopted so far to assess the effects of
 soil management on nematode communities and to calculate these food web
 indices. Here, we used high-throughput amplicon sequencing to investigate
 the effects of tillage (conventional vs reduced) and organic matter
 addition (low vs high) on nematode communities and food web indices in ten
 European long-term field experiments and we assessed the relationship
 between nematode communities and soil parameters. We found that nematode
 communities were more strongly affected by tillage than by organic matter
 addition. Compared to conventional tillage, reduced tillage increased
 nematode diversity (23% higher Shannon diversity index), nematode
 community stability (12% higher MI), structure (24% higher SI), and the
 fungal decomposition channel (59% higher CI), and also the number of
 herbivorous nematodes (70% higher). Total and labile organic carbon,
 available K and microbial parameters explained nematode community
 structure. Our findings show that nematode communities are sensitive
 indicators of soil quality and that molecular profiling of nematode
 communities has the potential to reveal the effects of soil management on
 soil quality.
description: Count and taxonomy
 nematodes OTUsCount and taxonomy table
 for the nematodes OTUs used in the analysisp476_run170628_18S_OTU_Count_Sintax_PR2.csvTaxonomy nematode completedTaxonomy assignment of nematodes after manual blasting of the OTU which were assigned as NAs. This has been done after the filtering step in the statistical analysis.taxonomy_filtered_nema_PR2_adjusted.csvMetadata and nematode parametersSamples informations, labile carbon fractions, and nematode parameters (richness, diversity, evenness, food web indices, absolute and relative abundance of feeding groups and cp groups, and also data relative to soil suppressiveness)Metadata_MolecularEcology.xlsx
DOI: 10.15146/r30d46
title: Portal 156 - Sao Paulo City population requests

description: Dataset of the population requirements for Sao Paulo city government