cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14182517
title: RNA sequencing data from the prefrontal cortex and hippocampus of male (12 weeks old) hemizyguous CAG-HERV-W-env mice and wild-type controls

description: RNA sequencing data from the prefrontal cortex (PFC) and hippocampus (HIPP) of male (12 weeks old) hemizyguous CAGHERV-Wenv mice ( C57BL6/J;129P2/Ola-Hprt mice; n = 3) relative to wild-type ( n = 3) littermates. Total RNA was extracted from prefrontal and hippocampal samples using the SPLIT RNA extraction kit (Lexogen, Austria) following the manufacturer’s recommendations and was sent to the Functional Genomics Center in Zurich (FGCZ) for quality control and RNA sequencing. The quality of the isolated RNA was determined with a Fragment Analyzer (Agilent, Santa Clara, California, USA). Only those samples with a 260 nm/280 nm ratio between 1.8–2.1, a 28S/18S ratio within 1.5–2, and RIN (>8) values qualified for a Poly-A enrichment strategy in order to generate the sequencing libraries applying the TruSeq mRNA Stranded Library Prep Kit (Illumina, Inc, California, USA). After Poly-A selection using Oligo-dT beads the mRNA was reverse-transcribed into cDNA. The cDNA was fragmented, end-repaired and poly-adenylated before ligation of TruSeq UD Indices (IDT, Coralville, Iowa, USA). The quality and quantity of the amplified sequencing libraries were validated using a Fragment Analyzer SS NGS Fragment Kit (1–6000 bp) (Agilent, Waldbronn, Germany). The equimolar pool of the samples was spiked into a NovaSeq6000 run targeting ~15M reads per sample on a S1 FlowCell (Novaseq S1 Reagent Kit, 100 cycles, Illumina, Inc, California, USA). Reads were quality-checked with FastQC. Sequencing adapters were removed with Trimmomatic and aligned to the reference genome and transcriptome of Mus Musculus (GENCODE, GRCm38,p5) with STAR v2.7.3. Distribution of the reads across genomic isoform expression was quantified using the R package GenomicRanges from Bioconductor Version 3.10. Minimum mapping quality, as well as minimum feature overlaps, was set to 10. Multi-overlaps were allowed. Differentially expressed genes (DEGs) were identified using the R package edgeR from Bioconductor Version 3.10, using a generalized linear model (glm) regression, a quasi-likelihood (QL) differential expression test and the trimmed means of M-values (TMM) normalization.
DOI: 10.5281/zenodo.14184511
title: RNA sequencing data from the prefrontal cortex and hippocampus of male (12 weeks old) hemizyguous CAG-HERV-W-env mice and wild-type controls

description: RNA sequencing data from the prefrontal cortex (PFC) and hippocampus (HIPP) of male (12 weeks old) hemizyguous CAGHERV-Wenv mice ( C57BL6/J;129P2/Ola-Hprt mice; n = 3) relative to wild-type ( n = 3) littermates. Total RNA was extracted from prefrontal and hippocampal samples using the SPLIT RNA extraction kit (Lexogen, Austria) following the manufacturer’s recommendations and was sent to the Functional Genomics Center in Zurich (FGCZ) for quality control and RNA sequencing. The quality of the isolated RNA was determined with a Fragment Analyzer (Agilent, Santa Clara, California, USA). Only those samples with a 260 nm/280 nm ratio between 1.8–2.1, a 28S/18S ratio within 1.5–2, and RIN (>8) values qualified for a Poly-A enrichment strategy in order to generate the sequencing libraries applying the TruSeq mRNA Stranded Library Prep Kit (Illumina, Inc, California, USA). After Poly-A selection using Oligo-dT beads the mRNA was reverse-transcribed into cDNA. The cDNA was fragmented, end-repaired and poly-adenylated before ligation of TruSeq UD Indices (IDT, Coralville, Iowa, USA). The quality and quantity of the amplified sequencing libraries were validated using a Fragment Analyzer SS NGS Fragment Kit (1–6000 bp) (Agilent, Waldbronn, Germany). The equimolar pool of the samples was spiked into a NovaSeq6000 run targeting ~15M reads per sample on a S1 FlowCell (Novaseq S1 Reagent Kit, 100 cycles, Illumina, Inc, California, USA). Reads were quality-checked with FastQC. Sequencing adapters were removed with Trimmomatic and aligned to the reference genome and transcriptome of Mus Musculus (GENCODE, GRCm38,p5) with STAR v2.7.3. Distribution of the reads across genomic isoform expression was quantified using the R package GenomicRanges from Bioconductor Version 3.10. Minimum mapping quality, as well as minimum feature overlaps, was set to 10. Multi-overlaps were allowed. Differentially expressed genes (DEGs) were identified using the R package edgeR from Bioconductor Version 3.10, using a generalized linear model (glm) regression, a quasi-likelihood (QL) differential expression test and the trimmed means of M-values (TMM) normalization.
DOI: 10.6084/m9.figshare.27850653
title: source data of "Self-assembly of 1T/1H superlattices in transition metal dichalcogenides"

description: We report a chemical vapour transport method to synthesize NbSe<sub>2</sub>-based 1T/1H superlattice single crystals, showing hybridized electronic properties from the constituent layers.The raw data is provided here.
DOI: 10.6084/m9.figshare.27850653.v1
title: Self-assembly of 1T/1H superlattices in transition metal dichalcogenides

description: Here, we report a chemical vapour transport method to synthesize NbSe<sub>2</sub>-based 1T/1H superlattice single crystals, showing hybridized electronic properties from the constituent layers.
DOI: 10.18150/wdxdsu
title: Interakcje mikrobioty skóry ludzkiej z ekstraktami roślinnymi tradycyjnie stosowanymi w leczeniu schorzeń skóry

description: Results of research conducted within NCN proposal no. 2020/39/O/NZ7/01109. Please consult the readme.txt file for additional information.The aim of the research was to evaluate bidirectional interactions of human skin microbiota with comfrey root (Symphytum officinale) extract traditionally used by patients all around the world. Within the study the metabolism of natural products contained in the raw extract was established. It was shown that some of the natural products belonging to the group of alkaloids were biotransformed by microorganisms contained in the microbiota samples. Apart from that it was shown that the extract modulated the composition of skon microbiota in ex vivo experiments.
DOI: 10.15468/dl.yja2yt
title: Occurrence Download

description: A dataset containing 1150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cenchrus echinatus L."
 ]
}

 The dataset includes 1150 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021369-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/qd2p-1p70
title: The ref spectrum for the calibraion of Siwft/UVOT UV grism spectra

description: We used the spectrum of 3C273 as a reference spectrum to check the validity of the method to remove the second order contamination from Swift/UVOT UV nominal spectra.
DOI: 10.15468/dl.rdgrd9
title: Occurrence Download

description: A dataset containing 2622 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pterocarpus indicus Willd."
 ]
}

 The dataset includes 2622 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021370-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hy73u6
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Matsucoccus matsumurae (Kuwana, 1905)"
 ]
}

 The dataset includes 42 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021371-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11637953
title: Photoactive integrated microfluidic valves for on-chip fluid control

description: This dataset is acompannying the publication: Photoactive integrated microfluidic valves for on-chip fluid control.
DOI: 10.5281/zenodo.11637954
title: Photoactive integrated microfluidic valves for on-chip fluid control

description: This dataset is acompannying the publication: Photoactive integrated microfluidic valves for on-chip fluid control.
DOI: 10.15468/dl.r48qpz
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ecnomiohyla miliaria (Cope, 1886)"
 ]
}

 The dataset includes 36 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021372-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6gnrud
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bubalus mindorensis Heude, 1888"
 ]
}

 The dataset includes 77 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021373-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.buh8qa
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dipterocarpus grandiflorus (Blanco) Blanco"
 ]
}

 The dataset includes 782 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021376-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14183570
title: RealWheat2021_Volume1

description: The dataset is approximately 230 GB in size, compressed into 12 volumes and stored across 6 Zenodo repositories. This is the first part of RealWheat2021 dataset.

A real wheat dataset (RealWheat2021) was constructed for network development and performance evaluation. First, the original UAV images were stitched and geometrically calibrated with the 11 GCPs using the Agisoft Metashape Professional 1.5.1 software (Agisoft LLC, St. Petersburg, Russia). The orthophotos were manually adjusted to the north-south direction, and regions of interest were then clipped using the ArcMap 10.8 software (ESRI, Redlands, USA). A total of ten orthophotos belonging to six growth stages were generated. Second, the ten orthophotos were partitioned into training and testing datasets, respectively, adhering to a ratio of 7:3. Notebally, the testing datasets include three Stages for studying the robustness of proposed methods on different growth stages. Third, the ArcGIS software was employed to label each plot within the orthophotos. Fourth, each orthophoto and its label file were cropped into patches using the ArcMap software. A predefined sliding window approach was employed to extract patches from each orthophoto and its corresponding label file, with each patch having a consistent width and height of 1024 pixels, encompassing approximately four plots. The sliding step of the window was set as 0 to avoid any intersection of each patch. Fifth, the patches were rotated for data augmentation. The patches cropped from the orthophotos were defined as the initial direction (0°). Then, each patch was rotated clockwise starting from 0° to 90° with an interval of 15° (0°, 15°, 30°, 45°, 60°, 75°, 90°) using a Python package named OpenCV. The corresponding labels were processed in the same way as the patches. Finally, the RealWheat2021 dataset was constructed with 115234 images.
DOI: 10.5281/zenodo.14183571
title: RealWheat2021_Volume1

description: The dataset is approximately 230 GB in size, compressed into 12 volumes and stored across 6 Zenodo repositories. This is the first part of RealWheat2021 dataset.

A real wheat dataset (RealWheat2021) was constructed for network development and performance evaluation. First, the original UAV images were stitched and geometrically calibrated with the 11 GCPs using the Agisoft Metashape Professional 1.5.1 software (Agisoft LLC, St. Petersburg, Russia). The orthophotos were manually adjusted to the north-south direction, and regions of interest were then clipped using the ArcMap 10.8 software (ESRI, Redlands, USA). A total of ten orthophotos belonging to six growth stages were generated. Second, the ten orthophotos were partitioned into training and testing datasets, respectively, adhering to a ratio of 7:3. Notebally, the testing datasets include three Stages for studying the robustness of proposed methods on different growth stages. Third, the ArcGIS software was employed to label each plot within the orthophotos. Fourth, each orthophoto and its label file were cropped into patches using the ArcMap software. A predefined sliding window approach was employed to extract patches from each orthophoto and its corresponding label file, with each patch having a consistent width and height of 1024 pixels, encompassing approximately four plots. The sliding step of the window was set as 0 to avoid any intersection of each patch. Fifth, the patches were rotated for data augmentation. The patches cropped from the orthophotos were defined as the initial direction (0°). Then, each patch was rotated clockwise starting from 0° to 90° with an interval of 15° (0°, 15°, 30°, 45°, 60°, 75°, 90°) using a Python package named OpenCV. The corresponding labels were processed in the same way as the patches. Finally, the RealWheat2021 dataset was constructed with 115234 images.
DOI: 10.15468/dl.ckdc9m
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gallicolumba platenae (Salvadori, 1893)"
 ]
}

 The dataset includes 22 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021377-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tuud39
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "TaxonKey is Echinocactus grusonii Hildm."
 ]
}

 The dataset includes 29 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021379-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5jsmbv
title: Occurrence Download

description: A dataset containing 257 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rusa marianna (Desmarest, 1822)"
 ]
}

 The dataset includes 257 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021380-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17192/fdr/160
title: Technological Literacy in Geography - Digital Game-Based Learning in virtual and actual field trips
DOI: 10.17192/fdr/146
title: Data for an integrated model to predict the intention to vaccinate against Covid-19

description: This dataset is used in an article with the following background: Rationale: Vaccinations provide adequate protection against many virus-related diseases. Nonetheless, many individuals refuse voluntary vaccinations, and their refusal could contribute to the spread of diseases. Previous research on the intention to vaccinate has been limited by focusing on a single target group. Objective: In this study, we develop an integrated theoretical framework incorporating the dual approach with relevant theories related to both disease and vaccination. Our objective is to examine the behavioral reasons for the decision to vaccinate or not. The adaptive appraisals concern aspects of vaccination and the non-adaptive appraisals concern aspects of COVID-19. The framework is applied to the much-discussed context of COVID-19 vaccination. Method: We investigate the intention to vaccinate of two target groups, unvaccinated individuals and twice-vaccinated individuals, with a partial squares structured equation model. Results: Our results show that unvaccinated individuals are driven in their intention to vaccinate by their attitude (toward vaccination); factors relating to the disease have no influence. In contrast, when deciding whether to be revaccinated, twice-vaccinated individuals balance factors relating to vaccination and factors relating to disease. Conclusions: We conclude that the proposed integrated theoretical model is appropriate for investigating diverse target groups and deriving implications.
DOI: 10.17192/fdr/200
title: Processing Unexpected Social Feedback in Depression: Differences in Feedback Acceptance and Immunizing Cognition
DOI: 10.17192/fdr/67
title: Data_BatRack_2020
DOI: 10.17192/fdr/35
title: Metamorphic development of the olfactory system in the red flour beetle (Tribolium castaneum, HERBST) – Dataset Orco RNAi

description: Each lif-file (Leica Image File) contains one or more confocal image stacks of the same specimen. At the time of submission, those files can be opened using Leicas LAS X software (Core Offline Version is sufficient), or any software using the open source Bio-Formats library.
DOI: 10.17192/fdr/57
title: CWiLT Corpus

description: The CWiLT corpus contains 321 creative writing L2 English texts of German school learners from grades 6-9
DOI: 10.17192/fdr/42
title: Metamorphic development of the olfactory system in the red flour beetle (Tribolium castaneum, HERBST) - Dataset Staging

description: The tar archives contain stereomicroscopic timelapse images, while the excel-sheets provide descriptional information and the analysis (*.xlsx - including formulas and diagrams; *.csv - values only)
DOI: 10.17192/fdr/2.2
title: PoS-tagged Middle Welsh texts from Oxford, Jesus College MS. 119

description: Middle Welsh PoS-tagged texts from Oxford, Jesus College MS. 119, as transcribed in Luft, Diana; Thomas, Peter Wynn; Smith, D. Mark (2013): Rhyddiaith Gymraeg 1300-1425. Cardiff University. Available online at http://www.rhyddiaithganoloesol.caerdydd.ac.uk. PoS-tagging by Marieke Meelen, preprocessing and manual correction by Elena Parina and Raphael Sackmann. These data are part of the project ‚Übersetzungen als Sprachkontaktphänomene - Untersuchungen zu lexikalischen, grammatischen und syntaktischen Interferenzen in mittelkymrischen religiösen Texten’ funded by Fritz Thyssen Foundation, P.I. Prof. Dr. Erich Poppe, 1-10.2015-30.09.2018 For the tags see Meelen, Marieke (2016): Why Jesus and Job spoke bad Welsh. The origin and distribution of V2 orders in Middle Welsh. Utrecht: LOT. Available online at http://www.lotpublications.nl/why-jesus-and-job-spoke-bad-welsh. pp. 328-330.
DOI: 10.17192/fdr/194
title: Example pictures AMT

description: The dataset includes pictures taken with our automated moth trap (AMT) in the university forest of the Philipps University of Marburg (Marburg Open Forest) near Caldern in Hesse, Germany. Eight AMTs were were operated five times on 16 plots from the beginning of July 2021 to the end of August 2021. Moths were attracted via a LED-UV tube and then rested on an illuminated white LED-board. An oppositely placed camera box took pictures of the resting moths with an 5MP Raspberry Pi-camera. The AMTs were scheduled to take photos every 30 s between 10 p.m. and 6:00 a.m. The files are named according to the recording date using the following naming convention: image_picture number_year month day_hour minute second (e.g. im_0163_20210720_232554). Additonally, our statistical analysis in R and datasets used for our publication are included (AMT_vs_CON.tar).
DOI: 10.17192/fdr/233
title: 4D STEM data of the Publication - A Small Step for Epitaxy, a Large Step Towards Twist Angle Control in 2D Heterostructures

description: 4D Scanning nano-beam diffraction dataset in the NETCDF dataformat.
description: The datasets are used in the publication: O. Maßmeyer, J. Belz, B. O. Dogahe, M. Widemann, R. Günkel, J. Glowatzki, M. Bergmann, S. Pasko, S. Krotkus, M. Heuken, A. Beyer, K. Volz, A Small Step for Epitaxy, a Large Step Toward Twist Angle Control in 2D Heterostructures. Adv. Mater. Interfaces 2024. The paper discusses the investigation of 2D heterostructures of WS2 and graphene grown by metal organic chemical vapor deposition (MOCVD) with high resolution scanning transmission electron microscopy. The datasets contain the 4D scanning nanobeam diffraction data of two different sample regions containing a monolayer and a bilayer region of WS2 on top of the graphene layers. A more detailed description of the dataset structure can be found in the attached markdown file and in the supporting information of the research article.
DOI: 10.17192/fdr/234
title: Prognostic impact of immunophenotypic variation in subcapsular sinus endothelium of sentinel lymph nodes in invasive breast carcinoma

description: "immunophenotypic_variation_SEC.csv" is a minimal data set, containing the data at the basis of the results reported in Frontiers of Immunology. Data including calendary dates can additionally be requested via data_UMR or email at trafo@[1] or westhoff@[2] (upon reasonable request). [1]uni-marburg.de [2]med.uni-marburg.de To request the data via data_UMR, please click on the data and send a request via the appearing template.
DOI: 10.17192/fdr/40
title: Metamorphic development of the olfactory system in the red flour beetle (Tribolium castaneum, HERBST) – Dataset AL Local Neurons

description: Each lif-file (Leica Image File) contains one or more confocal image stacks of the same specimen. At the time of submission, those files can be opened using Leicas LAS X software (Core Offline Version is sufficient), or any software using the open source Bio-Formats library.
DOI: 10.17192/fdr/80
title: Scripts and data for the training of ML-models to classify activity based on VHF-signal-pattern

description: This archive contains all data and scripts to reproduce the model training procedure described in: An open-source method for classification of activity states in small vertebrates using automatic VHF-telemetry
DOI: 10.17192/fdr/157
title: EEG correlates of attentional capture in joint action

description: Dataset from the following publication: Abbasi, H., Dötsch, D., & Schubö, A. (under revision). EEG correlates of attentional capture in joint action. European Journal of Neuroscience. For more information see the ReadMe.pdf file.
DOI: 10.17192/fdr/36
title: Metamorphic development of the olfactory system in the red flour beetle (Tribolium castaneum, HERBST) – Dataset GOC Glomeruli

description: Each lif-file (Leica Image File) contains one or more confocal image stacks of the same specimen. At the time of submission, those files can be opened using Leicas LAS X software (Core Offline Version is sufficient), or any software using the open source Bio-Formats library.