cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2pt08t
title: CCDC 2496686: Experimental Crystal Structure Determination

description: Related Article: H.P. Yennawar, T.K. Mal, M.A. Olsen, A.F. Lagalante, A.D. Gavalis, I.G. Frederick, E.M. Louca, L.J. Silverberg|2025|Acta Crystallogr.,Sect.E:Cryst.Commun.|81|1044|doi:10.1107/S2056989025009193
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ptm9g
title: CCDC 2497276: Experimental Crystal Structure Determination

description: Related Article: Qiaomu Yang, Xiaojuan Yu, Ekaterina Lapsheva, Pragati Pandey, Patrick W. Smith, Himanshu Gupta, Michael R. Gau, Patrick J. Carroll, Stefan G. Minasian, Jochen Autschbach and Eric J. Schelter|2025|Chemical Science||16597|doi:10.1039/D5SC03222A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ptmbh
title: CCDC 2497277: Experimental Crystal Structure Determination

description: Related Article: Qiaomu Yang, Xiaojuan Yu, Ekaterina Lapsheva, Pragati Pandey, Patrick W. Smith, Himanshu Gupta, Michael R. Gau, Patrick J. Carroll, Stefan G. Minasian, Jochen Autschbach and Eric J. Schelter|2025|Chemical Science||16597|doi:10.1039/D5SC03222A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.30648857
title: <b>RNA-seq dataset (part 2 of 2) for "</b><b>Versatile and selective biomolecule pulldown with combinatorial DNA-crosslinked polymers"</b>

description: Raw RNA sequencing datasets (Part 2)
DOI: 10.6084/m9.figshare.30648857.v1
title: <b>RNA-seq dataset (part 2 of 2) for "</b><b>Versatile and selective biomolecule pulldown with combinatorial DNA-crosslinked polymers"</b>

description: Raw RNA sequencing datasets (Part 2)
DOI: 10.5519/qd.x7qunmac
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.48331/scielodata.0e9vlu/yfswte
title: Mediciones de los granos de polen de Lobelia macrocentron.csv

description: Mediciones de veinte granos de polen de Lobelia macrocentron
DOI: 10.48331/scielodata.0e9vlu/gpeakp
title: Mediciones de los granos de polen de Lobelia villaregalis.csv

description: Mediciones de veinte granos de polen de Lobelia villaregalis
DOI: 10.48331/scielodata.0e9vlu/5djal6
title: README plantilla_Morfología polínica de dos Lobelias.txt
DOI: 10.48331/scielodata.0e9vlu
title: Datos de replicación para: Morfología polínica de dos especies de Lobelia (Campanulaceae: Lobelioideae) restringidas al occidente y noroeste de México

description: El conjunto de datos da soporte a los resultados del trabajo donde se compara la morfología de los granos de polen de Lobelia macrocentron y de Lobelia villaregalis.
description: Excel, 16.0
DOI: 10.26007/c9hn-ec24
title: Lucy Ralph Linear Etalon Imaging Spectral Array (L'Ralph LEISA) Donaldjohanson Calibrated Data

description: This collection contains calibrated data products produced by Lucy's L'Ralph LEISA instrument during the Donaldjohanson mission phase.
DOI: 10.5281/zenodo.17098625
title: Metabolic homeostasis favors tolerance to persistent viral infection in Aedes aegypti mosquitoes

description: Description:



This repository contains the raw data used to produce this manuscript with the exception of the small RNA sequencing and its analysis. 

Original raw reads used for this research paper are publicly available (after publication) at the SRA database under the BioProject ID: PRJNA1287247.

The bioinformatic protocols used to analyse the data are availavle at https://github.com/naborlozada/Perdomo_et_al_2025_sRNA_analysis
DOI: 10.5281/zenodo.17098626
title: Metabolic homeostasis favors tolerance to persistent viral infection in Aedes aegypti mosquitoes

description: Description:



This repository contains the raw data used to produce this manuscript with the exception of the small RNA sequencing and its analysis. 

Original raw reads used for this research paper are publicly available (after publication) at the SRA database under the BioProject ID: PRJNA1287247.

The bioinformatic protocols used to analyse the data are availavle at https://github.com/naborlozada/Perdomo_et_al_2025_sRNA_analysis
DOI: 10.26007/szzg-aw56
title: Lucy Ralph Linear Etalon Imaging Spectral Array (L'Ralph LEISA) Donaldjohanson Raw Data

description: This collection contains raw data products produced by Lucy's L'Ralph LEISA instrument during the Donaldjohanson mission phase.
DOI: 10.26007/ts6a-df28
title: Lucy Ralph Linear Etalon Imaging Spectral Array (L'Ralph LEISA) Documents, Version 2.0

description: This collection contains documents pertaining to Lucy's L'Ralph Linear Etalon Imaging Spectral Array (LEISA) instrument.
 
 This version updates several of the documents.
DOI: 10.5281/zenodo.17640114
title: Dataset for 'Characterizing and Mitigating Flux Crosstalk in Superconducting Qubits-Couplers System'

description: Corrected title from "Standardized Zenodo Data Format for Dataset: 'Characterizing and Mitigating Flux Crosstalk in Superconducting Qubits-Couplers System" to "Dataset for "Characterizing and Mitigating Flux Crosstalk in Superconducting Qubits-Couplers System""

Included DOI in README.md, CITATION.cff, and zenodo.json

Updated README.md to include in the first and last portion of the text the Zenodo citation of the dataset.

Updated the Git bash repo using the Github references.

Will add the corresponding creators and contributors of the dataset, and funding

Will label the upload not as software but as dataset.

No change in images, data and scripts attached.
description: If you use this Zenodo dataset or its data template, please cite as below.
DOI: 10.34740/kaggle/dsv/13780649
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.17136302
title: Global Soil Plasmidome Resource (GSPR)

description: Description

DuckDB database and fasta files of the GSPR, described in the paper (https://www.nature.com/articles/s41467-025-65102-6) and on github.

The phylo_gain tarball contains the trees in nwk format for the soil_vs_soil and soil_vs_all isolates, which were used for the analyses done in the paper for phylogenetic gain

Usage

To query the .db file, you will need to install duckdb. Then you can query it in the command line (e.g. `duckdb soil_plasmid.db -c "SELECT * FROM ptu_derep"`)

To see all tables, take a look at the github repo with the explanations, or query the db in the CLI with `duckdb soil_plasmid.db -c "SHOW TABLES"`

The database is also exported as parquet files for users that may prefer this format
DOI: 10.5281/zenodo.15042296
title: Global Soil Plasmidome Resource (GSPR)

description: Description

DuckDB database and fasta files of the GSPR, described in the paper (https://www.nature.com/articles/s41467-025-65102-6) and on github.

The phylo_gain tarball contains the trees in nwk format for the soil_vs_soil and soil_vs_all isolates, which were used for the analyses done in the paper for phylogenetic gain

Usage

To query the .db file, you will need to install duckdb. Then you can query it in the command line (e.g. `duckdb soil_plasmid.db -c "SELECT * FROM ptu_derep"`)

To see all tables, take a look at the github repo with the explanations, or query the db in the CLI with `duckdb soil_plasmid.db -c "SHOW TABLES"`

The database is also exported as parquet files for users that may prefer this format
DOI: 10.15468/dl.ku7wpg
title: Occurrence Download

description: A dataset listing the 281 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chiroptera"
 ]
}

 The dataset's 281 records were derived from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042465-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/jfmweg
title: Whale catches in the Southern Ocean

description: Season whale catch records for austral summers from 1931/32 to 1979/80. Data has been aggregated into one degree cells centered on the reported position. Covers five whale species - Blue, Fin, Sei, Minke and Humpback.
DOI: 10.15468/dl.3g8dqy
title: Occurrence Download

description: A dataset containing 19537 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Curvularia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 19537 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042478-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/y70azr
title: Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Tourterelle des bois 2000 - 2004 Coordonnées GPS Lambert 93

description: Aire de reproduction de l'espèce Tourterelle des bois fondée sur la présence de mâles chanteurs au printemps (avril – juin), à partir de points d’écoutes répartis le long d’itinéraires échantillons. Environ 5 000 points ont été visités chaque année entre 2000 et 2004
DOI: 10.15468/dl.umrxdp
title: Occurrence Download

description: A dataset containing 890097 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "PublishingCountry is Austria"
 ]
}

 The dataset includes 890097 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042454-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/xgnt9v
title: Extraction de données Odonates utilisé pour la liste rouge régionale d'Aquitaine-Données de présence collectées sur les odonates

description: Données de présence d'odonates collectées par les agents de Biotope Sud-Ouest entre 2001 et 2015 sur les départements de la Gironde, de la Dordogne, du Lot et Garonne, des Pyrénées Atlantiques et des Landes.
Le dénombrement des individus est renseigné pour toutes les observations.
DOI: 10.15468/dl.y4fqtp
title: Occurrence Download

description: A dataset containing 2138755 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.75941 37.35152,-2.05258 37.35152,-2.05258 39.09292,-3.75941 39.09292,-3.75941 37.35152))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2138755 records from 390 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042395-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjwsc8
title: Occurrence Download

description: A dataset containing 646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macrosporium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 646 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042480-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/itaoh5
title: Botanical Museum, Copenhagen, the Lichen Herbarium

description: Database of collections of lichens and lichen parasites at the Botanical Museum and Garden, Copenhagen (C). Alle accessions after 1994 and all types are digitized.
DOI: 10.15468/znol4z
title: Capture Mark Recapture Data for Scottish Elasmobranchs: 2009-2018

description: Capture mark recapture data from the Scottish Shark Tagging Programme. The datatset includes the following species: blonde ray, bull huss, common skate, small eyes ray, smoothhound, spurdog, thornback ray, tope, undulate ray, portbeagle, sandy skate, cukoo ray and spotted ray . All records were tagged in the UK, priarily on the west coast of Scotland, however recaptures may be further afield. All data has been collected by volunteer recreational sea anglers.
DOI: 10.15468/dl.gjzmc5
title: Occurrence Download

description: A dataset containing 1808442 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "PublishingCountry is Ireland"
 ]
}

 The dataset includes 1808442 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042456-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/megroo
title: Observations du Conservatoire botanique national du Bassin parisien.

description: Système d'information sur la flore du Bassin parisien, Flora.
DOI: 10.15468/s1f4aw
title: Staatliches Museum für Naturkunde Stuttgart, Herbarium
DOI: 10.15468/dl.ca555j
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gibellina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042482-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/k7okvx
title: VerteCAT: Banco de datos de vertebrados de Cataluña

description: VerteCat es un banco de datos que recoge las observaciones sobre los vertebrados que aparecen en la bibliografía especializada en el marco territorial de Cataluña. También se recoge la información taxonómica, ecológica, corológica, etc., del taxón, siempre que estos datos figuren en el trabajo.
DOI: 10.15468/kxoxgy
title: LiquenCAT: Banco de datos de los líquenes de Cataluña

description: LiquenCat es un banco de datos que recoge las observaciones sobre los líquenes que a aparecen en la bibliografía especializada en el marco territorial de Cataluña. También se recoge la información taxonómica, ecológica, corológica, etc., del taxón, siempre que estos datos figuren en el trabajo.
DOI: 10.15468/dl.nwxter
title: Occurrence Download

description: A dataset containing 1221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Magnaporthe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1221 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042483-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/gxtuz9
title: Flore de l'Ain

description: Inventaire complet de la flore du département de l'Ain publié en 1999 par Bolomier et Cattin
DOI: 10.15468/dl.x2knep
title: Occurrence Download

description: A dataset containing 466516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Linaria vulgaris",
 "HasCoordinate is true"
 ]
}

 The dataset includes 466516 records from 2011 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042459-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15574385
title: 4D-STEM dataset from Arina with different conditions for lecture and exercise

description: This is the datasets acquired on a Spectra 200 TEM using DECTRIS Arina detector for lecture and exercise in Materials Science department at FAU Erlangen-Nuremberg.

The purpose of the exercise is to Deepen the understanding of STEM image formation and typical contrast mechanisms when using different setups and conditions.

Sample: Si solar cell in cross-sectionExperiments: STEM probe with various convergence angles (small, medium, large)Probe current: ~30 - 100 pADwell time: 10 and 40 usScan field size: 512x512 pixels (various step size that define field of view)

Description of datasets:

“0p5mrad_000_master.h5”: large FoV scan (Si/SiOx TiN and Al), α = 0.5 mrad , CL125mm

“7p5mrad_001_master.h5”: high magnification (Si/SiOx TiN interface region), α = 7.5 mrad , CL62mm“7p5mrad_002_master.h5”: large FoV scan (Si/ SiOx TiN and Al), α = 7.5 mrad , CL62mm“7p5mrad_003_master.h5”: large FoV scan (Si/ SiOx TiN and Al), α = 7.5 mrad , longer camera length, CL125mm

“15mrad_000_master.h5”: high magnification (Si/SiOx TiN interface region), α = 15 mrad , long camera length, CL125mm“15mrad_001_master.h5”: high magnification (Si/SiOx TiN interface region), α = 15 mrad , short camera length, CL62mm“15mrad_002_master.h5”: large FoV scan (Si/ SiOx TiN and Al), α = 15 mrad , long camera length CL125mm

“30mrad_001_master.h5”: high magnification, α = 30 mrad , faster scan (10us pixel time, 96x96 detector), CL62mm“30mrad_002_master.h5”: high magnification, α = 30 mrad , CL62mm“30mrad_003_master.h5”: high magnification, α = 30 mrad , CL62mm“30mrad_004_master.h5”: large FoV scan (Si/ SiOx TiN and Al), α = 30 mrad , CL62mm“30mrad_005_master.h5”: high magnification, α = 30 mrad , CL62mm

Further metadata can be found in the corresponding .h5 files.

 

You may use Dectris NOVENA software to examine the datasets:https://eistools.com/novena 4d stem
DOI: 10.5281/zenodo.15574386
title: 4D-STEM dataset from Arina with different conditions for lecture and exercise

description: This is the datasets acquired on a Spectra 200 TEM using DECTRIS Arina detector for lecture and exercise in Materials Science department at FAU Erlangen-Nuremberg.

The purpose of the exercise is to Deepen the understanding of STEM image formation and typical contrast mechanisms when using different setups and conditions.

Sample: Si solar cell in cross-sectionExperiments: STEM probe with various convergence angles (small, medium, large)Probe current: ~30 - 100 pADwell time: 10 and 40 usScan field size: 512x512 pixels (various step size that define field of view)

Description of datasets:

“0p5mrad_000_master.h5”: large FoV scan (Si/SiOx TiN and Al), α = 0.5 mrad , CL125mm

“7p5mrad_001_master.h5”: high magnification (Si/SiOx TiN interface region), α = 7.5 mrad , CL62mm“7p5mrad_002_master.h5”: large FoV scan (Si/ SiOx TiN and Al), α = 7.5 mrad , CL62mm“7p5mrad_003_master.h5”: large FoV scan (Si/ SiOx TiN and Al), α = 7.5 mrad , longer camera length, CL125mm

“15mrad_000_master.h5”: high magnification (Si/SiOx TiN interface region), α = 15 mrad , long camera length, CL125mm“15mrad_001_master.h5”: high magnification (Si/SiOx TiN interface region), α = 15 mrad , short camera length, CL62mm“15mrad_002_master.h5”: large FoV scan (Si/ SiOx TiN and Al), α = 15 mrad , long camera length CL125mm

“30mrad_001_master.h5”: high magnification, α = 30 mrad , faster scan (10us pixel time, 96x96 detector), CL62mm“30mrad_002_master.h5”: high magnification, α = 30 mrad , CL62mm“30mrad_003_master.h5”: high magnification, α = 30 mrad , CL62mm“30mrad_004_master.h5”: large FoV scan (Si/ SiOx TiN and Al), α = 30 mrad , CL62mm“30mrad_005_master.h5”: high magnification, α = 30 mrad , CL62mm

Further metadata can be found in the corresponding .h5 files.

 

You may use Dectris NOVENA software to examine the datasets:https://eistools.com/novena 4d stem
DOI: 10.15468/dl.ejydds
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014891-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hp4ufp
title: Occurrence Download

description: A dataset containing 2308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Meles meles (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((6.171576 45.79817, 10.608718 45.79817, 10.608718 47.798397, 6.171576 47.798397, 6.171576 45.79817))",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2000"
 ]
}

 The dataset includes 2308 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014893-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/cw6b6953yy.1
title: Digital infrastructure development and green efficiency of water use

description: Paper: Digital infrastructure development and green efficiency of water use- A quasi-natural experiment based on "Broadband "China" strategy Empirical dataset
DOI: 10.17632/x4thjr5kcy.1
title: Data for Chemical Engineering Research and Design

description: These data contain coal consumption in the industrial sector in Jakarta. These data were obtained from BPS-Statistics DKI Jakarta Province and BPS-Statistics of Indonesia.
DOI: 10.15468/dl.3gt2jc
title: Occurrence Download

description: A dataset containing 612 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.2_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cygnus columbianus (Ord, 1815)",
 "Year 2020-2025"
 ]
}

 The dataset includes 612 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011322-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kydppu
title: Occurrence Download

description: A dataset containing 257369 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Balaenoptera acutorostrata Lacépède, 1804"
 ]
}

 The dataset includes 257369 records from 415 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011312-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzgfg9
title: Occurrence Download

description: A dataset containing 6402612 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1980",
 "TaxonKey is one of (Pica pica (Linnaeus, 1758), Pica galliae Kleinschmidt, 1917, Corvus pica Linnaeus, 1758, Corvus spec Linnaeus, 1758, Pica caudata Fleming, Pica rusicola (Scopoli))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 },
 "BasisOfRecord is one of (Human Observation, Observation, Specimen)",
 "HasCoordinate is true",
 {
 "not" : {
 "Country" : [
 "is one of (American Samoa, Guam, Northern Mariana Islands, Puerto Rico, United States Minor Outlying Islands, United States of America, Virgin Islands (U.S.))"
 ]
 }
 }
 ]
}

 The dataset includes 6402612 records from 4868 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003012-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.