cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7797926.v1
title: Missing in action: possible effects of water recovery on stream and river flows in the Murray–Darling Basin, Australia

description: We use published water balance data from irrigated cropping to show that water entitlements acquired for environmental purposes through water infrastructure subsidies in the Murray–Darling Basin, Australia, have resulted in smaller increases in net stream and river flows than is estimated by the Australian Government, and may even have reduced net stream and river flows. Two key policy implications arising from our results are: (1) subsidies to improve irrigation efficiency so as to increase stream and river flows must employ water accounting so that the effects on return flows are known and the volume of water extracted for irrigation is adjusted to achieve desired stream and river flows; and (2) <i>if</i> the net increases in stream and river flows in the MDB are much less than estimated by the Australian Government, water infrastructure subsidies to increase irrigation efficiency may have compromised the delivery of key objects of the <i>Water Act (2007)</i>.
DOI: 10.6084/m9.figshare.7797941.v1
title: Studies of Assessing Heritage Buildings After Reuse.xlsx

description: This table contains 25 studies, between 2008-2018, that assessed heritage buildings after reuse. It demonstrates their date , authors, number of studied cases, buildings' names, buildings' locations, buildings' date of construction, listing data, buildings' original use and current use, items evaluated, and the followed methods and tools.
DOI: 10.6084/m9.figshare.7797902.v1
title: Vitamin D insufficiency and deficiency are associated with a higher level of serum uric acid: A systematic review and meta-analysis

description: <b>Introduction/objectives:</b> Several epidemiological studies have suggested that patients with vitamin D insufficiency and deficiency tend to have a higher level of serum uric acid compared with those with adequate vitamin D level although the results were inconsistent across the studies. The current systematic review and meta-analysis was conducted with the aim to summarize all the available data. <b>Methods:</b> A systematic review was conducted using MEDLINE and EMBASE database from inception to May 2018 to identify all studies that compared the level of serum uric acid between individuals with normal vitamin D level and patients with vitamin D insufficiency/deficiency. Eligible studies must be cohort or cross-sectional studies that consisted of two groups of adult participants, one with normal level of vitamin D (vitamin D level &gt;30 ng/ml) and one with vitamin D insufficiency (vitamin D level 20–30 ng/ml) or vitamin D deficiency (vitamin D level of &lt;20 ng/ml). Mean serum uric acid level and standard deviation of participants were extracted from each study to calculate mean difference (MD). Pooled MD was then calculated by combining MDs of each study using random-effects model. <b>Results:</b> A total of seven cross-sectional studies were eligible for the meta-analyses. Individuals with normal vitamin D level had a significantly lower serum uric acid level than patients with vitamin D insufficiency with the pooled MD of –0.33 mg/dl (95%CI, –0.61, –0.04), and also had a significantly lower serum uric acid level than patients with vitamin D deficiency with the pooled MD of –0.45 mg/dl (95%CI, –0.82, –0.08). The statistical heterogeneity of these meta-analyses was high with the <i>I</i><sup>2</sup> of 78% and 89%, respectively. Funnel plots of both meta-analyses were fairly symmetric and did not provide a suggestive evidence for the presence of publication bias. <b>Conclusion:</b> Both patients with vitamin D insufficiency and patients with vitamin D deficiency had a significantly higher level of serum uric acid compared with individuals with normal vitamin D level.
DOI: 10.6084/m9.figshare.7797917.v1
title: Seismic traces recorded by station MZ01

description: Seismic traces in binary MiniSeed format recorded by the station MZ01. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Velocimetric data are available from September 19, 2016 to October 14, 2016, whereas the accelerometric data are available up to November 25, 2016.
DOI: 10.6084/m9.figshare.7797890
title: Ultrasound Bladder Scanners Market Global Market Size, Market Share, Growth and Forecast to 2026.pdf

description: Ultrasound Bladder Scanners Market Was Valued At US$ 122.4 Mn In 2017 And Expected To Reach US$ 207.2 Mn By 2026 At A CAGR Of 6.0% During The Forecast Period From 2018 To 2026
DOI: 10.6084/m9.figshare.7797890.v1
title: Ultrasound Bladder Scanners Market Global Market Size, Market Share, Growth and Forecast to 2026.pdf

description: Ultrasound Bladder Scanners Market Was Valued At US$ 122.4 Mn In 2017 And Expected To Reach US$ 207.2 Mn By 2026 At A CAGR Of 6.0% During The Forecast Period From 2018 To 2026
DOI: 10.6084/m9.figshare.7797689
title: supporting data for China’s urban methane emissions from municipal wastewater treatment plant

description: data<br>
DOI: 10.6084/m9.figshare.7797689.v1
title: supporting data for China’s urban methane emissions from municipal wastewater treatment plant

description: data<br>
DOI: 10.6084/m9.figshare.7797689.v3
title: supporting data for China’s urban methane emissions from municipal wastewater treatment plant

description: data<br>
DOI: 10.6084/m9.figshare.7797689.v2
title: supporting data for China’s urban methane emissions from municipal wastewater treatment plant

description: data<br>
DOI: 10.6084/m9.figshare.7797617
title: EEG power spectra of BXD lines

description: Binary .smo files were structured as follows: Each file contains a 4-day recording or precisely 86’400 consecutive 4s epochs. Each 4s epoch contains the following information: one byte character and 404 single precision floating-points, which represent, respectively: sleep-wake state of the 4s epoch as a character (wake = ‘w’, NREM sleep = ‘n’, REM sleep = ‘r’, wake w/ EEG artifact = ‘1’, NREM sleep w/ EEG artifact = ‘2’, REM sleep w/ EEG artifact = ‘3’, wake w/ spindle-like EEG activity = ‘4’, NREM sleep w/ spindle-like EEG activity = ‘5’, REM sleep w/ spindle-like EEG activity = ‘6’, Paroxysmal EEG activity in wake = ‘7’, Paroxysmal EEG activity in NREM sleep = ‘8’, Paroxysmal EEG activity in REM sleep = ‘9’ ), EEG power density from the full DFT spectrum of the 4s epoch from 0.00 Hz to 100.00 Hz (401 values at 0.25-Hz resolution), the EEG variance, the EMG variance, and temperature. Temperature was not measured and was set to 0.0.
DOI: 10.6084/m9.figshare.7797590
title: Autophagy plays a protective role against <i>Trypanosoma cruzi</i> infection in mice

description: Autophagy is a catabolic pathway required for cellular and organism homeostasis. Autophagy participates in the innate and adaptive immune responses at different levels. Xenophagy is a class of selective autophagy that involves the elimination of intracellular pathogens. <i>Trypanosoma cruzi</i> is the causative agent of Chagas, a disease that affects 8 million individuals worldwide. Previously, our group has demonstrated that autophagy participates in the invasion of <i>T. cruzi</i> in non-phagocytic cells. In this work we have studied the involvement of autophagy in the development of <i>T. cruzi</i> infection in mice. Beclin-1 is a protein essential for autophagy, required for autophagosome biogenesis and maturation. We have performed an acute model of infection on the autophagic deficient <i>Beclin-1</i> heterozygous knock-out mice (Bcln<sup>±</sup>) and compared to control Bcln<sup>+/+</sup> animals. In addition, we have analyzed the infection process in both peritoneal cells and RAW macrophages. Our results have shown that the infection was more aggressive in the autophagy-deficient mice, which displayed higher numbers of parasitemia, heart´s parasitic nests and mortality rates. We have also found that peritoneal cells derived from Bcln<sup>±</sup> animals and RAW macrophages treated with autophagy inhibitors displayed higher levels of infection compared to controls. Interestingly, free cytosolic parasites recruited LC3 protein and other markers of xenophagy in control compared to autophagy-deficient cells. Taken together, these data suggest that autophagy plays a protective role against <i>T. cruzi</i> infection in mice, xenophagy being one of the processes activated as part of the repertoire of immune responses generated by the host.
DOI: 10.6084/m9.figshare.7797617.v1
title: EEG power spectra of BXD lines

description: Binary .smo files were structured as follows: Each file contains a 4-day recording or precisely 86’400 consecutive 4s epochs. Each 4s epoch contains the following information: one byte character and 404 single precision floating-points, which represent, respectively: sleep-wake state of the 4s epoch as a character (wake = ‘w’, NREM sleep = ‘n’, REM sleep = ‘r’, wake w/ EEG artifact = ‘1’, NREM sleep w/ EEG artifact = ‘2’, REM sleep w/ EEG artifact = ‘3’, wake w/ spindle-like EEG activity = ‘4’, NREM sleep w/ spindle-like EEG activity = ‘5’, REM sleep w/ spindle-like EEG activity = ‘6’, Paroxysmal EEG activity in wake = ‘7’, Paroxysmal EEG activity in NREM sleep = ‘8’, Paroxysmal EEG activity in REM sleep = ‘9’ ), EEG power density from the full DFT spectrum of the 4s epoch from 0.00 Hz to 100.00 Hz (401 values at 0.25-Hz resolution), the EEG variance, the EMG variance, and temperature. Temperature was not measured and was set to 0.0.
DOI: 10.6084/m9.figshare.7797584
title: Sum of OAM beams

description: Data was taken from [1]. Using Matlab, the S-parameters are interpolated, thus a pattern of the distribution of S21 parameters is obtained. Further, the sum of beams with different OAM states are simulated, and on the basis of an analysis of the distribution pattern of S21 parameters, it is concluded that there is a definite beam or a sum of them in various combinations
DOI: 10.6084/m9.figshare.7797584.v1
title: Sum of OAM beams

description: Data was taken from [1]. Using Matlab, the S-parameters are interpolated, thus a pattern of the distribution of S21 parameters is obtained. Further, the sum of beams with different OAM states are simulated, and on the basis of an analysis of the distribution pattern of S21 parameters, it is concluded that there is a definite beam or a sum of them in various combinations
DOI: 10.6084/m9.figshare.7797590.v2
title: Autophagy plays a protective role against <i>Trypanosoma cruzi</i> infection in mice

description: Autophagy is a catabolic pathway required for cellular and organism homeostasis. Autophagy participates in the innate and adaptive immune responses at different levels. Xenophagy is a class of selective autophagy that involves the elimination of intracellular pathogens. <i>Trypanosoma cruzi</i> is the causative agent of Chagas, a disease that affects 8 million individuals worldwide. Previously, our group has demonstrated that autophagy participates in the invasion of <i>T. cruzi</i> in non-phagocytic cells. In this work we have studied the involvement of autophagy in the development of <i>T. cruzi</i> infection in mice. Beclin-1 is a protein essential for autophagy, required for autophagosome biogenesis and maturation. We have performed an acute model of infection on the autophagic deficient <i>Beclin-1</i> heterozygous knock-out mice (Bcln<sup>±</sup>) and compared to control Bcln<sup>+/+</sup> animals. In addition, we have analyzed the infection process in both peritoneal cells and RAW macrophages. Our results have shown that the infection was more aggressive in the autophagy-deficient mice, which displayed higher numbers of parasitemia, heart´s parasitic nests and mortality rates. We have also found that peritoneal cells derived from Bcln<sup>±</sup> animals and RAW macrophages treated with autophagy inhibitors displayed higher levels of infection compared to controls. Interestingly, free cytosolic parasites recruited LC3 protein and other markers of xenophagy in control compared to autophagy-deficient cells. Taken together, these data suggest that autophagy plays a protective role against <i>T. cruzi</i> infection in mice, xenophagy being one of the processes activated as part of the repertoire of immune responses generated by the host.
DOI: 10.6084/m9.figshare.7797575
title: Dataless files of network 3A

description: This DATALESS folder contains the dataless files of each station belonging to network 3A. Each dataless file contains a complete and comprehensive history of metadata for the associated station.
DOI: 10.6084/m9.figshare.7797575.v1
title: Dataless files of network 3A

description: This DATALESS folder contains the dataless files of each station belonging to network 3A. Each dataless file contains a complete and comprehensive history of metadata for the associated station.
DOI: 10.6084/m9.figshare.7797590.v1
title: Autophagy plays a protective role against <i>Trypanosoma cruzi</i> infection in mice

description: Autophagy is a catabolic pathway required for cellular and organism homeostasis. Autophagy participates in the innate and adaptive immune responses at different levels. Xenophagy is a class of selective autophagy that involves the elimination of intracellular pathogens. <i>Trypanosoma cruzi</i> is the causative agent of Chagas, a disease that affects 8 million individuals worldwide. Previously, our group has demonstrated that autophagy participates in the invasion of <i>T. cruzi</i> in non-phagocytic cells. In this work we have studied the involvement of autophagy in the development of <i>T. cruzi</i> infection in mice. Beclin-1 is a protein essential for autophagy, required for autophagosome biogenesis and maturation. We have performed an acute model of infection on the autophagic deficient <i>Beclin-1</i> heterozygous knock-out mice (Bcln<sup>±</sup>) and compared to control Bcln<sup>+/+</sup> animals. In addition, we have analyzed the infection process in both peritoneal cells and RAW macrophages. Our results have shown that the infection was more aggressive in the autophagy-deficient mice, which displayed higher numbers of parasitemia, heart´s parasitic nests and mortality rates. We have also found that peritoneal cells derived from Bcln<sup>±</sup> animals and RAW macrophages treated with autophagy inhibitors displayed higher levels of infection compared to controls. Interestingly, free cytosolic parasites recruited LC3 protein and other markers of xenophagy in control compared to autophagy-deficient cells. Taken together, these data suggest that autophagy plays a protective role against <i>T. cruzi</i> infection in mice, xenophagy being one of the processes activated as part of the repertoire of immune responses generated by the host.
DOI: 10.6084/m9.figshare.7797548
title: Physical activity of BXD mice by PIR

description: Physical activity per minutes for 8 days. Corresponding EEG/EMG was peformed the last 4 days
DOI: 10.6084/m9.figshare.7797554
title: Header files

description: Meta-data for EEG and activity recording
DOI: 10.6084/m9.figshare.7797563
title: Structure-based antibody paratope prediction with 3D Zernike descriptors and SVM

description: <b>Background:</b> This work presents a structure-based method for antibody interface prediction based on 3D Zernike Descriptors. Roto-translationally invariant descriptors are computed from circular patches of the antibody surface enriched with a chosen subset of physicochemical properties from the AAindex1 amino acid index set, and are used as samples for a binary classification problem. An SVM classifier is used to distinguish interface surface patches from non-interface ones. The proposed method was shown to outperform other antigen-binding interface prediction software.<br><br><b>binaries&scripts.tar.gz - </b>Contains the Linux binaries and Python scripts used in this study.<br><br><b>seq_descriptors_4.5.tar.gz -</b> Contains the sequence descriptors generated from the antibody structures in the development/validation set which were used for feature selection with the Randomized Logistic Regression algorithm.<br><br><b>development_set_structures_descriptors.tar.gz -</b> Contains the PDB structures of the antibody-antigen complexes in the development/validation set; the 3D Zernike Descriptors for each antibody; the predicted patch scores for each antibody; other supplementary files.<br><br><b>training_set_structures_descriptors.tar.gz -</b> Contains the PDB structures of the antibody-antigen complexes in the training set and the 3D Zernike Descriptors (rebalanced) for each antibody.<br><b><br>test_set_protein_ag_structures_descriptors.tar.gz - </b>Contains the PDB structures of the antibody-antigen complexes in the test set of antibodies complexed with protein antigens; the 3D Zernike Descriptors for each antibody; the predicted patch scores for each antibody; other supplementary files. <br><br><b>test_set_non_protein_ag_structures_descriptors.tar.gz - </b>Contains the PDB structures of the antibody-antigen complexes in the test set of antibodies complexed with non-protein antigens; the 3D Zernike Descriptors for each antibody; the predicted patch scores for each antibody; other supplementary files.<br><br><b>homology_modelled_test_set_protein_ag_structures_descriptors.tar.gz - </b>Contains the PDB structures of the homology modelled antibody structures in the test set of antibodies complexed with protein antigens; the 3D Zernike Descriptors for each antibody; the predicted patch scores for each antibody; other supplementary files. <br><br><b>homology_modelled_test_set_non_protein_ag_structures_descriptors.tar.gz - </b>Contains the PDB structures of the homology modelled antibody structures in the test set of antibodies complexed with non-protein antigens; the 3D Zernike Descriptors for each antibody; the predicted patch scores for each antibody; other supplementary files.
DOI: 10.6084/m9.figshare.7797554.v1
title: Header files

description: Meta-data for EEG and activity recording
DOI: 10.6084/m9.figshare.7797542
title: Locations

description: Locations of CO2 experiments
DOI: 10.6084/m9.figshare.7797542.v1
title: Locations

description: Locations of CO2 experiments
DOI: 10.6084/m9.figshare.7797521
title: Informal negotiations in EU legislative decision-making- A systematic review.xlsx

description: Coding grid of a systematic review of the literature on trilogues.<br>
DOI: 10.6084/m9.figshare.7797521.v2
title: Informal negotiations in EU legislative decision-making- A systematic review.xlsx

description: Coding grid of a systematic review of the literature on trilogues.<br>
DOI: 10.6084/m9.figshare.7797521.v1
title: Informal negotiations in EU legislative decision-making- A systematic review.xlsx

description: Coding grid of a systematic review of the literature on trilogues.<br>
DOI: 10.6084/m9.figshare.7797437
title: The influence of logging on vertebrate responses to mast fruiting

description: These data were collected from Danum Valley, Sabah 2013-2015 and represent detections of several vertebrate taxa from camera traps in logged and unlogged forest. We also collected fruit every 2-3 weeks from these camera trap stations which was used to estimate spatiotemporal variation in fruit biomass.
DOI: 10.6084/m9.figshare.7797434
title: A multi-omics digital research object for the genetics of sleep regulation: Input-data and code

description: Input, Output data and source code for the systems genetics of sleep regulation using the mm9 assembly and mm10 assembly.<br>HivePlots_v3.1f_PearsonQuick2.PrecomputedCorrelations.Rdata is an intermediate file for hiveplot visualization using the mm9 assembly.<br><br>and HivePlots_v3.2_PearsonQuick2.PrecomputedCorrelations.Rdata is an intermediate file for hiveplot visualization using the mm10 assembly.<br><br>Source Code zip files are backup scripts, description and documentation that are available here: https://gitlab.unil.ch/mjan/Systems_Genetics_of_Sleep_Regulation. Scripts using the mm10 assembly are available as the mm10 branch. Master branch is for the mm9 assembly and our related publication.<br>bxd.vital-it.ch.zip are backup files from the bxd.vital-it.ch website.<br>
DOI: 10.6084/m9.figshare.7797437.v1
title: The influence of logging on vertebrate responses to mast fruiting

description: These data were collected from Danum Valley, Sabah 2013-2015 and represent detections of several vertebrate taxa from camera traps in logged and unlogged forest. We also collected fruit every 2-3 weeks from these camera trap stations which was used to estimate spatiotemporal variation in fruit biomass.
DOI: 10.6084/m9.figshare.7797434.v1
title: Input data for systems genetics of sleep regulation

description: Input and Output data for the systems genetics of sleep regulation using the mm9 assembly and mm10 assembly.<br>Scripts, description and documentation are available here: https://gitlab.unil.ch/mjan/Systems_Genetics_of_Sleep_Regulation. Scripts using the mm10 assembly are available as the mm10 branch. Master branch is for the mm9 assembly and our related publication.<br>HivePlots_v3.1f_PearsonQuick2.PrecomputedCorrelations.Rdata is an intermediate file for hiveplot visualization using the mm9 assembly.<br><br>and HivePlots_v3.2_PearsonQuick2.PrecomputedCorrelations.Rdata is an intermediate file for hiveplot visualization using the mm10 assembly.<br>
DOI: 10.6084/m9.figshare.7797434.v2
title: Input data for systems genetics of sleep regulation

description: Input and Output data for the systems genetics of sleep regulation using the mm9 assembly and mm10 assembly.<br>Scripts, description and documentation are available here: https://gitlab.unil.ch/mjan/Systems_Genetics_of_Sleep_Regulation. Scripts using the mm10 assembly are available as the mm10 branch. Master branch is for the mm9 assembly and our related publication.<br>HivePlots_v3.1f_PearsonQuick2.PrecomputedCorrelations.Rdata is an intermediate file for hiveplot visualization using the mm9 assembly.<br><br>and HivePlots_v3.2_PearsonQuick2.PrecomputedCorrelations.Rdata is an intermediate file for hiveplot visualization using the mm10 assembly.<br>
DOI: 10.6084/m9.figshare.7797401
title: Robert F. Kennedy during the Cuban Missile Crisis a timetable.pdf

description: This timetable was produced for the article, ‘Robert Kennedy and the Cuban Missile Crisis: a Reassertion of Robert Kennedy’s Role as the President’s ‘Indispensable Partner’ in the Successful Resolution of the Crisis’. This is primarily a timetable of RFK’s movements, although certain key events have been included to provide benchmarks. The timetable focuses on the thirteen days at the heart of the crisis, to illustrate the intensity and breadth of RFK’s contribution.
DOI: 10.6084/m9.figshare.7797434.v4
title: A multi-omics digital research object for the genetics of sleep regulation: Input-data and code

description: Input, Output data and source code for the systems genetics of sleep regulation using the mm9 assembly and mm10 assembly.<br>HivePlots_v3.1f_PearsonQuick2.PrecomputedCorrelations.Rdata is an intermediate file for hiveplot visualization using the mm9 assembly.<br><br>and HivePlots_v3.2_PearsonQuick2.PrecomputedCorrelations.Rdata is an intermediate file for hiveplot visualization using the mm10 assembly.<br><br>Source Code zip files are backup scripts, description and documentation that are available here: https://gitlab.unil.ch/mjan/Systems_Genetics_of_Sleep_Regulation. Scripts using the mm10 assembly are available as the mm10 branch. Master branch is for the mm9 assembly and our related publication.<br>bxd.vital-it.ch.zip are backup files from the bxd.vital-it.ch website.<br>
DOI: 10.6084/m9.figshare.7797389
title: ESM1. Model of K1 killer activity from Dynamic modelling of the killing mechanism of action by virus-infected yeasts

description: (.cps format, COPASI working file)