cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6756635.v1
title: Matlab code to produce the figures from Three-dimensional time-domain scattering of waves in the marginal ice zone

description: Three-dimensional scattering of ocean surface waves in the marginal ice zone (MIZ) is determined in the time-domain. The solution is found using spectral analysis of the linear operator for the Boltzmann equation. The method to calculate the scattering kernel that arises in the Boltzmann model from the single floe solution is also presented along with new identities for the far-field scattering, which can be used to validate the single floe solution. The spectrum of the operator is computed, and it is shown to have a universal structure under a special non-dimensionalization. This universal structure implies that under a scaling wave scattering in the MIZ has similar properties for a large range of ice types and wave periods. A scattering theory solution using fast Fourier transforms is given to find the solution for directional incident wave packets. A numerical solution method is also given using the split-step method and this is used to validate the spectral solution. Numerical calculations of the evolution of a typical wave field are presented.This article is part of the theme issue ‘Modelling of sea-ice phenomena’.
DOI: 10.6084/m9.figshare.6756617
title: Table S1 from Decomposing the effects of ocean environments on predator–prey body-size relationships in food webs

description: Data on prey–predator interactions and oceanographic parameters that were used for the analyses in this study. The following table lists the prey mass [g], predator mass [g], annual mean temperature (Tmean) [°C], temperature seasonality (Tvar), annual mean salinity (Smean) [unitless], salinity variability (Svar), annual mean oxygen concentration (O2mean) [mL/L], oxygen variability (O2var), primary production (PPmean), variability of primary production (PPvar), depth [m], habitat type, predator identity, geographic location, reference, latitude, longitude, start date (year and month) and end date (year and month) of the observation period. See the descriptions of the original dataset (esapubs.org/archive/ecol/E089/051/metadata.htm) for the details of the references. The table also includes the difference (diff.depth.X) between the depths at the observation points and depths at which the values of an oceanographic parameter X were extracted from the World Ocean Atlas database.
DOI: 10.6084/m9.figshare.6756617.v1
title: Table S1 from Decomposing the effects of ocean environments on predator–prey body-size relationships in food webs

description: Data on prey–predator interactions and oceanographic parameters that were used for the analyses in this study. The following table lists the prey mass [g], predator mass [g], annual mean temperature (Tmean) [°C], temperature seasonality (Tvar), annual mean salinity (Smean) [unitless], salinity variability (Svar), annual mean oxygen concentration (O2mean) [mL/L], oxygen variability (O2var), primary production (PPmean), variability of primary production (PPvar), depth [m], habitat type, predator identity, geographic location, reference, latitude, longitude, start date (year and month) and end date (year and month) of the observation period. See the descriptions of the original dataset (esapubs.org/archive/ecol/E089/051/metadata.htm) for the details of the references. The table also includes the difference (diff.depth.X) between the depths at the observation points and depths at which the values of an oceanographic parameter X were extracted from the World Ocean Atlas database.
DOI: 10.6084/m9.figshare.6756599
title: Cluster_Data from Walking together: behavioural signatures of psychological crowds

description: Raw data for cluster analysis, providing group number, x-coordinates, y-coordinates, and time points
DOI: 10.6084/m9.figshare.6756599.v1
title: Cluster_Data from Walking together: behavioural signatures of psychological crowds

description: Raw data for cluster analysis, providing group number, x-coordinates, y-coordinates, and time points
DOI: 10.6084/m9.figshare.6756590
title: Tesselation_areas from Walking together: behavioural signatures of psychological crowds

description: Raw data of tesseslation areas for multi-level modelling analysis of proxomity about pedestrians. This provides group numbers, time point being tracked, and the number of people present in the area at the corresponding time point.
DOI: 10.6084/m9.figshare.6756596
title: Speed_and_distance from Walking together: behavioural signatures of psychological crowds

description: Raw data for speed and distance analysis, indicating group numbers, speed walked, and distance walked.
DOI: 10.6084/m9.figshare.6756590.v1
title: Tesselation_areas from Walking together: behavioural signatures of psychological crowds

description: Raw data of tesseslation areas for multi-level modelling analysis of proxomity about pedestrians. This provides group numbers, time point being tracked, and the number of people present in the area at the corresponding time point.
DOI: 10.6084/m9.figshare.6756596.v1
title: Speed_and_distance from Walking together: behavioural signatures of psychological crowds

description: Raw data for speed and distance analysis, indicating group numbers, speed walked, and distance walked.
DOI: 10.6084/m9.figshare.12890681
title: PAVs of between soybean genomes compared with IGA1008

description: PAVs analyzed from MUMer and Blast between soybean genome assemblies and IGA1008
DOI: 10.6084/m9.figshare.6755831
title: Data to accompany paper: The impact of windscreen scatter on laser eye dazzle

description: Data to accompany paper: The impact of windscreen scatter on laser eye dazzle
DOI: 10.6084/m9.figshare.6755489.v1
title: Block-matrix-based approach for the hybrid vehicle routing problem with fuzzy travel time and transportation type selection

description: This is the experimental data of the manuscript entitled "Block-matrix-based approach for the hybrid vehicle routing problem with fuzzy travel time and transportation type selection". All data are generated through computer simulation and saved in the file with xlsx format. The data are consistent with the real-world case. For example, "dataset A" represents the small case that contains 10 suppliers, 2 cross-dock centers and 11 plants."dataset B" represents the large case that contains 30 suppliers, 5 cross-dock centers and 4 plants.
DOI: 10.6084/m9.figshare.6755831.v2
title: Data to accompany paper: The impact of windscreen scatter on laser eye dazzle

description: Data to accompany paper: The impact of windscreen scatter on laser eye dazzle
DOI: 10.6084/m9.figshare.6755489.v2
title: Block-matrix-based approach for the hybrid vehicle routing problem with fuzzy travel time and transportation type selection

description: This is the experimental data of the manuscript entitled "Block-matrix-based approach for the hybrid vehicle routing problem with fuzzy travel time and transportation type selection". All data are generated through computer simulation and saved in the file with xlsx format. The data are consistent with the real-world case. For example, "dataset A" represents the small case that contains 10 suppliers, 2 cross-dock centers and 11 plants."dataset B" represents the large case that contains 30 suppliers, 5 cross-dock centers and 4 plants.
DOI: 10.6084/m9.figshare.6755831.v1
title: Data to accompany paper: The impact of windscreen scatter on laser eye dazzle

description: Data to accompany paper: The impact of windscreen scatter on laser eye dazzle
DOI: 10.6084/m9.figshare.6755489.v3
title: Block-matrix-based approach for the hybrid vehicle routing problem with fuzzy travel time and transportation type selection

description: This is the experimental data of the manuscript entitled "Block-matrix-based approach for the hybrid vehicle routing problem with fuzzy travel time and transportation type selection". All data are generated through computer simulation and saved in the file with xlsx format. The data are consistent with the real-world case. For example, "dataset A" represents the small case that contains 10 suppliers, 2 cross-dock centers and 11 plants."dataset B" represents the large case that contains 30 suppliers, 5 cross-dock centers and 4 plants.
DOI: 10.6084/m9.figshare.6755489.v5
title: Block-matrix-based approach for the hybrid vehicle routing problem with fuzzy travel time and transportation type selection

description: This is the experimental data of the manuscript entitled "Block-matrix-based approach for the hybrid vehicle routing problem with fuzzy travel time and transportation type selection". All data are generated through computer simulation and saved in the file with xlsx format. The data are consistent with the real-world case. For example, "dataset A" represents the small case that contains 10 suppliers, 2 cross-dock centers and 11 plants."dataset B" represents the large case that contains 30 suppliers, 5 cross-dock centers and 4 plants.
DOI: 10.6084/m9.figshare.12890687
title: Indels between soybean genome assemblies and IGA1008

description: Indels analyzed from MUMer between soybean genome assemblies and IGA1008
DOI: 10.6084/m9.figshare.6755489.v4
title: Block-matrix-based approach for the hybrid vehicle routing problem with fuzzy travel time and transportation type selection

description: This is the experimental data of the manuscript entitled "Block-matrix-based approach for the hybrid vehicle routing problem with fuzzy travel time and transportation type selection". All data are generated through computer simulation and saved in the file with xlsx format. The data are consistent with the real-world case. For example, "dataset A" represents the small case that contains 10 suppliers, 2 cross-dock centers and 11 plants."dataset B" represents the large case that contains 30 suppliers, 5 cross-dock centers and 4 plants.
DOI: 10.6084/m9.figshare.6755159
title: Invertebrate drift densities in the Njoro and Kamweti Rivers in the Kenyan highlands that differ in the level of anthropogenic disturbances

description: Invertebrate drift is one of several fundamental ecological processes in streams. However, little is known about the dynamics of invertebrate drift in Kenyan streams. In this study, we assessed invertebrate drift in two rivers, i.e. Njoro and Kamweti, that differ in the level of anthropogenic disturbances, between February and March, 2016. The aim was to evaluate the effect of river sampling duration (5, 10, 15, 20 and 25 min) and sampling period (day or night) on invertebrate drift densities. The 5-minute sampling period resulted in significantly higher mean drift densities than the other time intervals in both rivers. The highest mean drift density (2.0 ± 0.9 individuals m<sup>−3</sup>) was recorded at the Njoro River during the day, whereas the lowest drift density (0.3 ± 0.2 individuals m<sup>−3</sup>) was recorded at the Kamweti River during the day. A strong nocturnal drift pattern was noted at the less disturbed river (Kamweti). The present results suggest that anthropogenic perturbations influence invertebrate drift densities, and sampling duration and sampling period are important factors to consider when sampling invertebrate drift.
DOI: 10.6084/m9.figshare.6755156
title: Fruit production along roads and footpaths in an Atlantic rain forest area

description: <b><i>Background</i></b>: Pathways (footpaths and roads) in forests are associated with edge effects, affecting forest structure and composition and associated wildlife. However, little is known about how edge effects along pathways may impact the dynamics of fruit production and their availability for frugivores. <b><i>Aim</i></b>: We related pathway width as a proxy for edge effects to fruit production. Our underlying hypothesis was that pathway width would be positively related to fruit production. <b><i>Methods</i></b>: We observed fruit production along three pathways of different widths – 2, 10 and 20 m wide – and in a control area of undisturbed forest in an Atlantic rain forest stand monthly over a 2-year period. <b><i>Results</i></b>: The number of species and individuals-bearing fruit was higher along the wider pathways than along the narrowest pathway and in the control area. The amount of zoochorous fruits was higher in the control area than along pathways, and the widest pathway had higher non-zoochorous fruits production. Fruiting peaks occurred along pathways, while fruiting in the control area was aseasonal. <b><i>Conclusions</i></b>: Pathway width is related to fruit type and its quantity and temporal availability. These effects extend towards the forest interior beyond 35 m. The presence of paths affects food resources for frugivores and thus can contribute to reconfiguring the spatio-temporal distribution of the fauna.
DOI: 10.6084/m9.figshare.6755159.v2
title: Invertebrate drift densities in the Njoro and Kamweti Rivers in the Kenyan highlands that differ in the level of anthropogenic disturbances

description: Invertebrate drift is one of several fundamental ecological processes in streams. However, little is known about the dynamics of invertebrate drift in Kenyan streams. In this study, we assessed invertebrate drift in two rivers, i.e. Njoro and Kamweti, that differ in the level of anthropogenic disturbances, between February and March, 2016. The aim was to evaluate the effect of river sampling duration (5, 10, 15, 20 and 25 min) and sampling period (day or night) on invertebrate drift densities. The 5-minute sampling period resulted in significantly higher mean drift densities than the other time intervals in both rivers. The highest mean drift density (2.0 ± 0.9 individuals m<sup>−3</sup>) was recorded at the Njoro River during the day, whereas the lowest drift density (0.3 ± 0.2 individuals m<sup>−3</sup>) was recorded at the Kamweti River during the day. A strong nocturnal drift pattern was noted at the less disturbed river (Kamweti). The present results suggest that anthropogenic perturbations influence invertebrate drift densities, and sampling duration and sampling period are important factors to consider when sampling invertebrate drift.
DOI: 10.6084/m9.figshare.6755156.v1
title: Fruit production along roads and footpaths in an Atlantic rain forest area

description: <b><i>Background</i></b>: Pathways (footpaths and roads) in forests are associated with edge effects, affecting forest structure and composition and associated wildlife. However, little is known about how edge effects along pathways may impact the dynamics of fruit production and their availability for frugivores. <b><i>Aim</i></b>: We related pathway width as a proxy for edge effects to fruit production. Our underlying hypothesis was that pathway width would be positively related to fruit production. <b><i>Methods</i></b>: We observed fruit production along three pathways of different widths – 2, 10 and 20 m wide – and in a control area of undisturbed forest in an Atlantic rain forest stand monthly over a 2-year period. <b><i>Results</i></b>: The number of species and individuals-bearing fruit was higher along the wider pathways than along the narrowest pathway and in the control area. The amount of zoochorous fruits was higher in the control area than along pathways, and the widest pathway had higher non-zoochorous fruits production. Fruiting peaks occurred along pathways, while fruiting in the control area was aseasonal. <b><i>Conclusions</i></b>: Pathway width is related to fruit type and its quantity and temporal availability. These effects extend towards the forest interior beyond 35 m. The presence of paths affects food resources for frugivores and thus can contribute to reconfiguring the spatio-temporal distribution of the fauna.
DOI: 10.6084/m9.figshare.6755150
title: Floristic distinctiveness and endemic richness of woody plants highlight the biodiversity value of the <i>herriza</i> among all Mediterranean heathlands

description: <b><i>Background</i></b>: Heathlands are relatively abundant in the landscape of the western Mediterranean region, especially in the Strait of Gibraltar region, where it is locally known as herriza. They are associated with a mild Mediterranean climate regime and with acid, nutrient-poor soils. They harbour a high plant diversity, often viewed as a consequence of the transition between European Atlantic heathland and Mediterranean sclerophyllous shrubland floras. <b><i>Aims</i></b>: To determine whether species-rich Mediterranean heathlands, including the herriza, constitute distinct heathland formations rather than transitional vegetation units between Atlantic heathlands and Mediterranean garrigue shrublands. <b><i>Methods</i></b>: We quantified species richness, endemism and analysed the β-diversity of the woody component of Mediterranean heathland communities throughout its geographic range, with special emphasis on the Strait of Gibraltar region. <b><i>Results</i></b>: Mediterranean heathlands, including the herriza, are not transitional communities between Atlantic heathlands and Mediterranean shrublands. Woody species richness and, particularly, endemic richness was the highest in the herriza. <b><i>Conclusions</i></b>: The high biodiversity values of the herriza are a likely consequence of the ecological singularity of the Strait of Gibraltar region and its known role as a glacial refugium. Despite its treeless feature, the herriza deserves special recognition and protection from both in its European and North African extension.
DOI: 10.6084/m9.figshare.6755153
title: The role of recruitment and dispersal limitation in tree community assembly in Amazonian forests

description: <b>Background</b>: Species composition of plant communities is shaped by the interplay between dispersal limitation, environmental filters and stochastic events. <b>Aims</b>: The aim of this work was to investigate the effects of dispersal limitation and environmental filtering on tree recruitment. To accomplish this, we employed the unified neutral theory of biodiversity and biogeography to examine migration within the metacommunity, defined as a set of interacting local communities linked by the dispersal of multiple potentially interacting species. <b>Methods</b>: We sampled 12,975 individuals with dbh ≥ 1 cm in 26 1-ha permanent plots, including habitats of <i>terra firme</i>, transitional forests, <i>várzea</i> and <i>campinarana</i>, on the upper Madeira River, Brazilian Amazon. <b>Results</b>: <i>Campinarana</i> drew individuals from outside the metacommunity species pool at a mean probability of recruitment of 0.06, a much lower probability than <i>terra firme</i> (0.31), transitional (0.21) and <i>várzea</i> forests (0.22). Environmental variables, such as water table depth, soil texture and fertility, were related to differences in community assembly. <b>Conclusions</b>: Species abundance distribution and diversity patterns of plant assemblages in a large river landscape in the Amazon highlight the importance of environmental heterogeneity that conditions beta-diversity. The high variation in recruitment probabilities from the metacommunity species pool to local communities suggests high habitat variability in the process of maintaining patterns of local diversity.
DOI: 10.6084/m9.figshare.6755153.v1
title: The role of recruitment and dispersal limitation in tree community assembly in Amazonian forests

description: <b>Background</b>: Species composition of plant communities is shaped by the interplay between dispersal limitation, environmental filters and stochastic events. <b>Aims</b>: The aim of this work was to investigate the effects of dispersal limitation and environmental filtering on tree recruitment. To accomplish this, we employed the unified neutral theory of biodiversity and biogeography to examine migration within the metacommunity, defined as a set of interacting local communities linked by the dispersal of multiple potentially interacting species. <b>Methods</b>: We sampled 12,975 individuals with dbh ≥ 1 cm in 26 1-ha permanent plots, including habitats of <i>terra firme</i>, transitional forests, <i>várzea</i> and <i>campinarana</i>, on the upper Madeira River, Brazilian Amazon. <b>Results</b>: <i>Campinarana</i> drew individuals from outside the metacommunity species pool at a mean probability of recruitment of 0.06, a much lower probability than <i>terra firme</i> (0.31), transitional (0.21) and <i>várzea</i> forests (0.22). Environmental variables, such as water table depth, soil texture and fertility, were related to differences in community assembly. <b>Conclusions</b>: Species abundance distribution and diversity patterns of plant assemblages in a large river landscape in the Amazon highlight the importance of environmental heterogeneity that conditions beta-diversity. The high variation in recruitment probabilities from the metacommunity species pool to local communities suggests high habitat variability in the process of maintaining patterns of local diversity.
DOI: 10.6084/m9.figshare.6755150.v1
title: Floristic distinctiveness and endemic richness of woody plants highlight the biodiversity value of the <i>herriza</i> among all Mediterranean heathlands

description: <b><i>Background</i></b>: Heathlands are relatively abundant in the landscape of the western Mediterranean region, especially in the Strait of Gibraltar region, where it is locally known as herriza. They are associated with a mild Mediterranean climate regime and with acid, nutrient-poor soils. They harbour a high plant diversity, often viewed as a consequence of the transition between European Atlantic heathland and Mediterranean sclerophyllous shrubland floras. <b><i>Aims</i></b>: To determine whether species-rich Mediterranean heathlands, including the herriza, constitute distinct heathland formations rather than transitional vegetation units between Atlantic heathlands and Mediterranean garrigue shrublands. <b><i>Methods</i></b>: We quantified species richness, endemism and analysed the β-diversity of the woody component of Mediterranean heathland communities throughout its geographic range, with special emphasis on the Strait of Gibraltar region. <b><i>Results</i></b>: Mediterranean heathlands, including the herriza, are not transitional communities between Atlantic heathlands and Mediterranean shrublands. Woody species richness and, particularly, endemic richness was the highest in the herriza. <b><i>Conclusions</i></b>: The high biodiversity values of the herriza are a likely consequence of the ecological singularity of the Strait of Gibraltar region and its known role as a glacial refugium. Despite its treeless feature, the herriza deserves special recognition and protection from both in its European and North African extension.