cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/icpsr36819.v2
title: Newly Licensed Registered Nurse New Cohort 1 Survey, 2009
title: Version 2

description: The Newly Licensed Registered Nurse Cohort 1 Survey, 2009 is the first wave of a multi-wave panel survey that studied newly licensed registered nurses who obtained their first license to practice between August 1, 2007 and July 31, 2008. It was conducted as part of the RN Work Project, a national study of new nurses funded by the Robert Wood Johnson Foundation. The survey interviewed the nurses about their jobs, turnover, education, intentions and attitudes--including intent, satisfaction, organizational commitment, and preferences about work.
description: The purpose of the NLRN Cohort 1 Survey was to: Describe newly licensed registered nurses' changes in work patterns and factors associated with those changes over an extended time period by following the panel from our current Robert Wood Johnson Foundation funded study for an additional six years Compare educational background, work setting, and work satisfaction among three different cohorts of NLRN Describe the training about patient safety of NLRNs employed in hospitals
description: Panel data was used for this study and all others in the series because it made it possible to determine the similarities and differencies in groups graduating in different years. That information provides an indication of changes in the environment or in those people who choose nursing as a career. Collecting data on two additional cohorts helped the researchers separate the threats to internal validity of history versus maturational effects. Princeton Survey Research Associates International (PSRAI) determined the distribution of nurses by site needed in order to achieve a minimum of 1,500 completed surveys. Each nurse was assigned a random number. This list was then organized by each of the 27 sites and sorted according to random numbers. The first N (number of respondents needed) were selected from each site.
description: The sample was weighted prior to collecting data so that analyses could be done without weighting final data set. We did not weight final sample by response rates from specific geographic areas.
description: Response Rates: 58% of nurses contacted for wave 1 returned a completed survey.
description: Presence of Common Scales: Large variety of scales from literature and questions identical to HRSA National Sample Survey - RNs 2005
description: The sample design for the New Cohort study sampled new RNs residing in 25 MSAs and 2 rural counties in 15 states across the country. For additional information, please refer to the User Guide
description: Datasets: DS1: Newly Licensed Registered Nurse New Cohort 1 Survey, 2009
description: Newly licensed registered nurses who obtained their first license to practice between August 1, 2007 and July 1, 2008. Smallest Geographic Unit: Region
description: mail questionnaireAdditional information about the survey is available on the RN Work Project website.
DOI: 10.6084/m9.figshare.22732736
title: Change of Surface Tension and Interfacial Tension

description: Surface tension of SP-DA-PEG aqueous solution under various light intensities and concentrations. Surface tension of MCH-para aqueous solution with different pH values. Interfacial tension of SP-DA-PEG or MCH-para aqueous solution and Krytox.
DOI: 10.6084/m9.figshare.13019966.v5
title: FaceBold

description: The preprocessed fMRI data of the FaceBold dataset (The data file has been removed due to copyright issues). <br> If you find our data useful in your research or publication, please cite our work:<br> <br> [1] Changde Du, Changying Du, Lijie Huang, Haibao Wang and Huiguang He*. Structured Neural Decoding with Multi-task Transfer Learning of Deep Neural Network Representations. <em>IEEE Transactions on Neural Networks and Learning Systems, 2020.<br> </em> <br> [2] Changde Du, Changying Du, Lijie Huang and Huiguang He*. Conditional Generative Neural Decoding with Structured CNN Feature Prediction. <em>AAAI 2020.</em><br> <pre><code><br></code></pre>
DOI: 10.5281/zenodo.7897987
title: Palleja et al. 2018 Metagenome Assemblies for Veseli et al. 2023

description: A collection of anvi'o contigs databases for 57 human fecal metagenome assemblies generated for the study by Veseli et al. titled "High metabolic independence is a determinant of microbial resilience in the face of gut stress". These are publicly-available gut metagenomes originally obtained from the study by Palleja et al titled "Recovery of gut microbiota of healthy adults following antibiotic exposure" (https://doi.org/10.1038/s41564-018-0257-9). See `PALLEJA_ET_AL_SAMPLES_INFO.txt` file for sample SRA accessions. The metagenomes were assembled individually using IDBA-UD as part of the anvi'o metagenomics workflow in anvi'o v7.1-dev. As part of this workflow, they were annotated with KEGG KOfams using `anvi-run-kegg-kofams` and a KEGG snapshot from December 12, 2020 (modules database hash value `45b7cc2e4fdc`). See manuscript and its reproducible workflow for details.
DOI: 10.5281/zenodo.7897986
title: Palleja et al. 2018 Metagenome Assemblies for Veseli et al. 2023

description: A collection of anvi'o contigs databases for 57 human fecal metagenome assemblies generated for the study by Veseli et al. titled "High metabolic independence is a determinant of microbial resilience in the face of gut stress". These are publicly-available gut metagenomes originally obtained from the study by Palleja et al titled "Recovery of gut microbiota of healthy adults following antibiotic exposure" (https://doi.org/10.1038/s41564-018-0257-9). See `PALLEJA_ET_AL_SAMPLES_INFO.txt` file for sample SRA accessions. The metagenomes were assembled individually using IDBA-UD as part of the anvi'o metagenomics workflow in anvi'o v7.1-dev. As part of this workflow, they were annotated with KEGG KOfams using `anvi-run-kegg-kofams` and a KEGG snapshot from December 12, 2020 (modules database hash value `45b7cc2e4fdc`). See manuscript and its reproducible workflow for details.
DOI: 10.6084/m9.figshare.22767248
title: Additional file 1 of Tissue proteome analysis for profiling proteins associated with lymph node metastasis in gallbladder cancer

description: Additional file 1: Supplementary Table S1. Clinical parameters of patients such as age, gender, TNM, stage, grade, white cell count, liver enzymes (AST/ ALT/ ALP), bilirubin and co-morbidities (jaundice, pulmonary tuberculosis, asthma, diabetes melitus, hypertension (HTN), loss of appetite(LOA) and LOW- Loss of weight; Foot note: NA- Not applicable, (-) Not available. Supplementary Table S2. List of 58 DEPs in LN Positive GBC. The proteins with ≥2.0 fold change and adjusted p value &lt;0.05 were used as DEPs. The details are provided in the Methods section. The Table describes the total number of proteins and peptides identified in mass spectrometry runs along with their quantity values. Supplementary Table S3. Bioinformatic analysis of 58 DEPs in LN positive GBC using STRING databse. (A) Top 10 Molecular Functions (B) Top 10 reactome pathways. Supplementary Table S4. Literature survey of 58 DEPs for their association with LN metastasis in cancer. A total of 6 proteins are reported in GBC, 33 proteins in other cancers and 19 were found to be novel to cancer with respect to LN metastasis.
DOI: 10.6084/m9.figshare.22767248.v1
title: Additional file 1 of Tissue proteome analysis for profiling proteins associated with lymph node metastasis in gallbladder cancer

description: Additional file 1: Supplementary Table S1. Clinical parameters of patients such as age, gender, TNM, stage, grade, white cell count, liver enzymes (AST/ ALT/ ALP), bilirubin and co-morbidities (jaundice, pulmonary tuberculosis, asthma, diabetes melitus, hypertension (HTN), loss of appetite(LOA) and LOW- Loss of weight; Foot note: NA- Not applicable, (-) Not available. Supplementary Table S2. List of 58 DEPs in LN Positive GBC. The proteins with ≥2.0 fold change and adjusted p value &lt;0.05 were used as DEPs. The details are provided in the Methods section. The Table describes the total number of proteins and peptides identified in mass spectrometry runs along with their quantity values. Supplementary Table S3. Bioinformatic analysis of 58 DEPs in LN positive GBC using STRING databse. (A) Top 10 Molecular Functions (B) Top 10 reactome pathways. Supplementary Table S4. Literature survey of 58 DEPs for their association with LN metastasis in cancer. A total of 6 proteins are reported in GBC, 33 proteins in other cancers and 19 were found to be novel to cancer with respect to LN metastasis.
DOI: 10.6084/m9.figshare.22767269.v1
title: Additional file 2 of Whole‐genome sequencing identifies interferon-induced protein IFI6/IFI27-like as a strong candidate gene for VNN resistance in European sea bass

description: Additional file 2: Table S1. Number of SNPs removed after several quality filters. Details of the number of SNPs removed with quality controls applied on whole-genome sequences and 57K SNP chip data.
DOI: 10.6084/m9.figshare.22767269
title: Additional file 2 of Whole‐genome sequencing identifies interferon-induced protein IFI6/IFI27-like as a strong candidate gene for VNN resistance in European sea bass

description: Additional file 2: Table S1. Number of SNPs removed after several quality filters. Details of the number of SNPs removed with quality controls applied on whole-genome sequences and 57K SNP chip data.
DOI: 10.6084/m9.figshare.13019966.v6
title: FaceBold

description: The preprocessed fMRI data of the FaceBold dataset (The data file has been removed due to copyright issues). <br> If you find our data useful in your research or publication, please cite our work:<br> <br> [1] Changde Du, Changying Du, Lijie Huang, Haibao Wang and Huiguang He*. Structured Neural Decoding with Multi-task Transfer Learning of Deep Neural Network Representations. <em>IEEE Transactions on Neural Networks and Learning Systems, 2022.<br> </em> <br> [2] Changde Du, Changying Du, Lijie Huang and Huiguang He*. Conditional Generative Neural Decoding with Structured CNN Feature Prediction. <em>AAAI 2020.</em><br> <pre><code><br></code></pre>
DOI: 10.6084/m9.figshare.22767396
title: Additional file 12 of aristaless1 has a dual role in appendage formation and wing color specification during butterfly development

description: Additional file 12: Source Data File 1. Zip file with the raw unedited blot images. Sections of these 3 images were used to create Supplemental Fig. 2.
DOI: 10.6084/m9.figshare.22767396.v1
title: Additional file 12 of aristaless1 has a dual role in appendage formation and wing color specification during butterfly development

description: Additional file 12: Source Data File 1. Zip file with the raw unedited blot images. Sections of these 3 images were used to create Supplemental Fig. 2.
DOI: 10.6084/m9.figshare.22767405
title: Additional file 15 of aristaless1 has a dual role in appendage formation and wing color specification during butterfly development

description: Additional file 15: Source Data File 3. Raw ΔCq data from our qPCR analysis used to calculate the relative expression of genes of interest. The data from this source file is used to produce the plots in Fig. 7 and Supplement Fig. 9 ad described in the method section.
DOI: 10.6084/m9.figshare.22767405.v1
title: Additional file 15 of aristaless1 has a dual role in appendage formation and wing color specification during butterfly development

description: Additional file 15: Source Data File 3. Raw ΔCq data from our qPCR analysis used to calculate the relative expression of genes of interest. The data from this source file is used to produce the plots in Fig. 7 and Supplement Fig. 9 ad described in the method section.
DOI: 10.6084/m9.figshare.22767411
title: Additional file 1 of PTEN-negative endometrial cancer cells protect their genome through enhanced DDB2 expression associated with augmented nucleotide excision repair

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.22767411.v1
title: Additional file 1 of PTEN-negative endometrial cancer cells protect their genome through enhanced DDB2 expression associated with augmented nucleotide excision repair

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.22767477
title: Additional file 2 of Precision medicine applied to metastatic colorectal cancer using tumor-derived organoids and in-vitro sensitivity testing: a phase 2, single-center, open-label, and non-comparative study

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.22767477.v1
title: Additional file 2 of Precision medicine applied to metastatic colorectal cancer using tumor-derived organoids and in-vitro sensitivity testing: a phase 2, single-center, open-label, and non-comparative study

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.22767482
title: Additional file 1 of BACE1 regulates expression of Clusterin in astrocytes for enhancing clearance of β-amyloid peptides

description: Additional file 1: Supplemental Figure S1. Quality control measure of Bace1-/- and Bace1+/+ scRNAseq. (A) Violin plots of data set quality control measurement for nFeature_RNA, nCount_RNA, and percent.mt generated from each ACSA2+-enriched sample. Samples 1a, 2a, 3a are from Bace1+/+ mice, while samples 4a, 5a, 6a are from Bace1-/-. Filtered cutoff points were set at GEMS containing &gt;1,000 identified genes, &lt;25,000 read counts, and &lt;20% mitochondrial RNA. (B) Visualization of UMAP dimension plot with identified cell type clusters from Bace1-/- and Bace1+/+ scRNAseq. R Astrocytes refers reactive astrocytes, and OPC stands for oligodendrocyte precursor cells. The visible difference is the increase in the R Astrocyte cluster in Bace1-/- samples. Supplemental Figure S2. Quality control measure of 5xFAD;Bace1fl/fl;UBC-creER and 5xFAD;Bace1fl/fl. Quality control measured for nFeature_RNA, nCount_RNA, and percent.mt generated from pooled ACSA2+-enriched samples from 5xFAD;Bace1fl/fl;UBC-creER (Sample 1A) and 5xFAD;Bace1fl/fl (Sample 3a) Filtered cutoff points were set at GEMS containing &gt;1,000 identified genes, &lt;25,000 read counts, and &lt;20% mitochondrial RNA. Supplemental Figure S3. Validation of siRNA Clu knockdown. (A) Western blot of WT primary astrocytes treated with either 80, 40, 20, 10 pmol of Clu siRNA or 80 pmol of control scrambled siRNA. Images indicate major bands for CLU and actin. (B) CLU band intensity normalized to actin. We noted that 80 pmol of Clu siRNA resulted in an approximately 50% decrease in LU levels compared to control siRNA. Supplemental Figure S4. Targeted astrocytic deletion of Bace1 increases Aβ clearance. Representative images from Thioflavin-S staining of amyloid plaques from fixed saggital brain sections of 5xFAD;Bace1fl/fl;Gfap-cre and 5xFAD;Bace1fl/fl. Insets highlight hippocampal and cortical regions that are presented in Fig. 9A. Supplemental Table 1. List of differentially expressed genes of Bace1-/- reactive astrocytes. Supplemental Table 2. List of differentially expressed genes of 5xFAD;Bace1fl/fl;UBC-creER reactive astrocytes.
DOI: 10.6084/m9.figshare.22767482.v1
title: Additional file 1 of BACE1 regulates expression of Clusterin in astrocytes for enhancing clearance of β-amyloid peptides

description: Additional file 1: Supplemental Figure S1. Quality control measure of Bace1-/- and Bace1+/+ scRNAseq. (A) Violin plots of data set quality control measurement for nFeature_RNA, nCount_RNA, and percent.mt generated from each ACSA2+-enriched sample. Samples 1a, 2a, 3a are from Bace1+/+ mice, while samples 4a, 5a, 6a are from Bace1-/-. Filtered cutoff points were set at GEMS containing &gt;1,000 identified genes, &lt;25,000 read counts, and &lt;20% mitochondrial RNA. (B) Visualization of UMAP dimension plot with identified cell type clusters from Bace1-/- and Bace1+/+ scRNAseq. R Astrocytes refers reactive astrocytes, and OPC stands for oligodendrocyte precursor cells. The visible difference is the increase in the R Astrocyte cluster in Bace1-/- samples. Supplemental Figure S2. Quality control measure of 5xFAD;Bace1fl/fl;UBC-creER and 5xFAD;Bace1fl/fl. Quality control measured for nFeature_RNA, nCount_RNA, and percent.mt generated from pooled ACSA2+-enriched samples from 5xFAD;Bace1fl/fl;UBC-creER (Sample 1A) and 5xFAD;Bace1fl/fl (Sample 3a) Filtered cutoff points were set at GEMS containing &gt;1,000 identified genes, &lt;25,000 read counts, and &lt;20% mitochondrial RNA. Supplemental Figure S3. Validation of siRNA Clu knockdown. (A) Western blot of WT primary astrocytes treated with either 80, 40, 20, 10 pmol of Clu siRNA or 80 pmol of control scrambled siRNA. Images indicate major bands for CLU and actin. (B) CLU band intensity normalized to actin. We noted that 80 pmol of Clu siRNA resulted in an approximately 50% decrease in LU levels compared to control siRNA. Supplemental Figure S4. Targeted astrocytic deletion of Bace1 increases Aβ clearance. Representative images from Thioflavin-S staining of amyloid plaques from fixed saggital brain sections of 5xFAD;Bace1fl/fl;Gfap-cre and 5xFAD;Bace1fl/fl. Insets highlight hippocampal and cortical regions that are presented in Fig. 9A. Supplemental Table 1. List of differentially expressed genes of Bace1-/- reactive astrocytes. Supplemental Table 2. List of differentially expressed genes of 5xFAD;Bace1fl/fl;UBC-creER reactive astrocytes.
DOI: 10.6084/m9.figshare.22767545
title: Additional file 1 of KLF4-mediated upregulation of the NKG2D ligand MICA in acute myeloid leukemia: a novel therapeutic target identified by enChIP

description: Additional file 1.
DOI: 10.6084/m9.figshare.22767545.v1
title: Additional file 1 of KLF4-mediated upregulation of the NKG2D ligand MICA in acute myeloid leukemia: a novel therapeutic target identified by enChIP

description: Additional file 1.
DOI: 10.6084/m9.figshare.22767548
title: Additional file 2 of KLF4-mediated upregulation of the NKG2D ligand MICA in acute myeloid leukemia: a novel therapeutic target identified by enChIP

description: Additional file 2.
DOI: 10.6084/m9.figshare.22767548.v1
title: Additional file 2 of KLF4-mediated upregulation of the NKG2D ligand MICA in acute myeloid leukemia: a novel therapeutic target identified by enChIP

description: Additional file 2.
DOI: 10.6084/m9.figshare.22767557
title: Additional file 1 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 1: Supplementary Table S1. Overview of the RNA sequencing data.
DOI: 10.6084/m9.figshare.22767557.v1
title: Additional file 1 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 1: Supplementary Table S1. Overview of the RNA sequencing data.
DOI: 10.6084/m9.figshare.22767560
title: Additional file 2 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 2: Supplementary Table S2. DEGs (21°C vs. 34°C) with |log2 (fold change)| &gt;1 and adjusted p-value &lt; 0.05 in all studied cultivars and tissues. lfcSE, standard error of the log2FoldChange; baseMean, mean of normalized counts of all samples.
DOI: 10.6084/m9.figshare.22767560.v1
title: Additional file 2 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 2: Supplementary Table S2. DEGs (21°C vs. 34°C) with |log2 (fold change)| &gt;1 and adjusted p-value &lt; 0.05 in all studied cultivars and tissues. lfcSE, standard error of the log2FoldChange; baseMean, mean of normalized counts of all samples.
DOI: 10.6084/m9.figshare.22767563
title: Additional file 3 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 3: Supplementary Table S3. GO terms enrichment analysis in DEGs. Significantly enriched terms (adjusted p-value &lt; 0.05) are sorted according to the GO terms group (P, Biological Process; F, Molecular Function; C, Cellular Component).
DOI: 10.6084/m9.figshare.22767563.v1
title: Additional file 3 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 3: Supplementary Table S3. GO terms enrichment analysis in DEGs. Significantly enriched terms (adjusted p-value &lt; 0.05) are sorted according to the GO terms group (P, Biological Process; F, Molecular Function; C, Cellular Component).
DOI: 10.6084/m9.figshare.22767566
title: Additional file 4 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 4: Supplementary Table 4. KEGG pathways [20] enrichment analysis in DEGs. Significantly enriched pathways (adjusted p-value &lt; 0.05) are shown for each tissue and cultivar.
DOI: 10.6084/m9.figshare.22767566.v1
title: Additional file 4 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 4: Supplementary Table 4. KEGG pathways [20] enrichment analysis in DEGs. Significantly enriched pathways (adjusted p-value &lt; 0.05) are shown for each tissue and cultivar.
DOI: 10.6084/m9.figshare.22767569
title: Additional file 5 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 5: Supplementary Table S5. GO terms and KEGG pathways [20] enrichment analysis of DEGs specific for Topas and for sensitive cultivars DH12075 and Westar.
DOI: 10.6084/m9.figshare.22767569.v1
title: Additional file 5 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 5: Supplementary Table S5. GO terms and KEGG pathways [20] enrichment analysis of DEGs specific for Topas and for sensitive cultivars DH12075 and Westar.
DOI: 10.6084/m9.figshare.22767572.v1
title: Additional file 6 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 6: Supplementary Table S6. List of genes co-expressed in specific modules.
DOI: 10.6084/m9.figshare.22767572
title: Additional file 6 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 6: Supplementary Table S6. List of genes co-expressed in specific modules.
DOI: 10.6084/m9.figshare.22767575
title: Additional file 7 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 7: Supplementary Table S7. GO terms enrichment analysis of genes co-expressed in a specific module according to WGCNA analysis. Significantly enriched terms (adjusted p-value &lt; 0.05) are sorted according to the GO terms group (P, Biological Process; F, Molecular Function; C, Cellular Component).
DOI: 10.6084/m9.figshare.22767575.v1
title: Additional file 7 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 7: Supplementary Table S7. GO terms enrichment analysis of genes co-expressed in a specific module according to WGCNA analysis. Significantly enriched terms (adjusted p-value &lt; 0.05) are sorted according to the GO terms group (P, Biological Process; F, Molecular Function; C, Cellular Component).
DOI: 10.6084/m9.figshare.22767578
title: Additional file 8 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 8: Supplementary Table S8. Top 20 hub genes in WGCNA modules.
DOI: 10.6084/m9.figshare.22767578.v1
title: Additional file 8 of Transcriptome analysis of thermomorphogenesis in ovules and during early seed development in Brassica napus

description: Additional file 8: Supplementary Table S8. Top 20 hub genes in WGCNA modules.