cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26093/cds/vizier.51600175
title: BVRcIc light curve of eclipsing binary V1023 Persei

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'BVRcIc observations and analysis of the UV LEO-type binary, the pre-WUMa, V1023 Persei.' (bibcode: 2020AJ....160..175S)
DOI: 10.26093/cds/vizier.51600238
title: Reflectivity of 4 Galilean satellites with ISS

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Reflected light observations of the Galilean satellites from Cassini: a test bed for cold terrestrial exoplanets.' (bibcode: 2020AJ....160..238M)
DOI: 10.26093/cds/vizier.51600084
title: Depth-of-search & completeness for 213 exoplanets

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Analytic stability maps of unknown exoplanet companions for imaging prioritization.' (bibcode: 2020AJ....160...84G)
DOI: 10.26093/cds/vizier.51610193
title: BVRI light curve of RR Lyrae V* AX UMa

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'AX UMa, an ab-type RR Lyrae star with a rapidly decreasing pulsation period, and its binarity.' (bibcode: 2021AJ....161..193L)
DOI: 10.26093/cds/vizier.51610246
title: Transit time variations for 12 exoplanets

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Following up the Kepler field: masses of targets for transit timing and atmospheric characterization.' (bibcode: 2021AJ....161..246J)
DOI: 10.26093/cds/vizier.51610071
title: Parameters for 40 LITTLE THINGS galaxies

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Relationships between the stellar, gaseous, and star formation disks in LITTLE THINGS dwarf irregular galaxies: indirect evidence for substantial fractions of dark molecular gas.' (bibcode: 2021AJ....161...71H)
DOI: 10.26093/cds/vizier.51620210
title: Transit Time Variations (TTVs) of WASP-43

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Investigation of orbital decay and global modeling of the planet WASP-43 b.' (bibcode: 2021AJ....162..210D)
DOI: 10.26093/cds/vizier.51630198
title: Radial velocities & activity index for HD107148

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Dynamical Architecture of the HD107148 Planetary System.' (bibcode: 2022AJ....163..198E)
DOI: 10.26093/cds/vizier.51630080
title: The Scorpion Planet Survey; A-stars IR spectroscopy

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The Scorpion Planet Survey; Wide-orbit Giant Planets Around Young A-type Stars.' (bibcode: 2022AJ....163...80W)
DOI: 10.26093/cds/vizier.51650265
title: Properties of 363 M-dwarfs from TESS

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The Occurrence Rate of Terrestrial Planets Orbiting Nearby Mid-to-late M Dwarfs from TESS Sectors 1-42.' (bibcode: 2023AJ....165..265M)
DOI: 10.26093/cds/vizier.18670105
title: ATLAS all-sky stellar ref. catalog, ATLAS-REFCAT2

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The ATLAS all-sky stellar reference catalog.' (bibcode: 2018ApJ...867..105T)
DOI: 10.26093/cds/vizier.22150009
title: PHAT X. UV-IR photometry of M31 stars

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The Panchromatic Hubble Andromeda Treasury. X. Ultraviolet to infrared photometry of 117 million equidistant stars.' (bibcode: 2014ApJS..215....9W)
DOI: 10.34740/kaggle/dsv/7250413
title: US counties COVID 19 dataset
DOI: 10.5281/zenodo.10414057
title: Vibrant_metabolic_gene_annotations_vOTUs

description: Vibrant v. 1.2.0 (default parameters; Kieft, Zhou, and Anantharaman 2020) was used to provide gene annotations for vOTUs that are <10kb or not detected by VirSoter. Although annotation is available for these vOTUs, we chose not to include the data in our results and discussion because of the uncertainty surrounding their validity.
DOI: 10.6084/m9.figshare.24881763
title: NSF Public Access Repository (PAR) Publication Access Project Data Sharing

description: Data sharing for submitted manuscript. Full citation information will be shared upon publication.<b>Title:</b> Open but Hidden: Open Access gaps in the National Science Foundation funded publications as posted online to the NSF Public Access Repository.<b>Abstract</b><b>Objectives</b>: In August of 2022, the U.S. federal government released new guidelines for making publicly funded research open and available. This study looks at the availability of National Science Foundation (NSF) funded research within the designated Public Access Repository (PAR) from two research intensive (R1) universities as required under the previous 2016 policy to evaluate the current state of compliance before new guidelines go into effect.<b>Methods</b>: The project team searched the NSF PAR for records published between 2017 and 2021 from two institutions. Records were reviewed to determine if the PAR held a deposited copy or provided a link out to the publisher held version(s). Where only a publisher linkout was provided, links were evaluated for the availability of an open access version.<b>Results</b>: A total of 841 unique records were identified. Of these 42% had a deposited PDF version as required by the NSF 2016 Public Access Policy. The remaining 58% relied exclusively on a publisher-held version. However, 45% of the provided publisher links directed to paywall versions. Additionally, 24% of records required users to have specialized knowledge of the CHORUS initiative in order to navigate from the initial paywall prompt to a publicly available version.<b>Conclusions</b>: Despite having a public access mandate since 2016, NSF compliance rates remain low. It seems unlikely that the additional guidelines introduced under the 2022 memo, meant to further drive public access to federal research, will increase compliance without additional dedication to oversight and/or imposed consequences for non-compliance.
DOI: 10.6084/m9.figshare.24881763.v1
title: NSF Public Access Repository (PAR) Publication Access Project Data Sharing

description: Data sharing for submitted manuscript. Full citation information will be shared upon publication.<b>Title:</b> Open but Hidden: Open Access gaps in the National Science Foundation funded publications as posted online to the NSF Public Access Repository.<b>Abstract</b><b>Objectives</b>: In August of 2022, the U.S. federal government released new guidelines for making publicly funded research open and available. This study looks at the availability of National Science Foundation (NSF) funded research within the designated Public Access Repository (PAR) from two research intensive (R1) universities as required under the previous 2016 policy to evaluate the current state of compliance before new guidelines go into effect.<b>Methods</b>: The project team searched the NSF PAR for records published between 2017 and 2021 from two institutions. Records were reviewed to determine if the PAR held a deposited copy or provided a link out to the publisher held version(s). Where only a publisher linkout was provided, links were evaluated for the availability of an open access version.<b>Results</b>: A total of 841 unique records were identified. Of these 42% had a deposited PDF version as required by the NSF 2016 Public Access Policy. The remaining 58% relied exclusively on a publisher-held version. However, 45% of the provided publisher links directed to paywall versions. Additionally, 24% of records required users to have specialized knowledge of the CHORUS initiative in order to navigate from the initial paywall prompt to a publicly available version.<b>Conclusions</b>: Despite having a public access mandate since 2016, NSF compliance rates remain low. It seems unlikely that the additional guidelines introduced under the 2022 memo, meant to further drive public access to federal research, will increase compliance without additional dedication to oversight and/or imposed consequences for non-compliance.
DOI: 10.5281/zenodo.10414058
title: Vibrant_metabolic_gene_annotations_vOTUs

description: Vibrant v. 1.2.0 (default parameters; Kieft, Zhou, and Anantharaman 2020) was used to provide gene annotations for vOTUs that are <10kb or not detected by VirSoter. Although annotation is available for these vOTUs, we chose not to include the data in our results and discussion because of the uncertainty surrounding their validity.
DOI: 10.5281/zenodo.10414229
title: Protocol selection process - Systematic Literature Review Related Work
DOI: 10.5281/zenodo.10414228
title: Protocol selection process - Systematic Literature Review Related Work
DOI: 10.5281/zenodo.10327908
title: Autonomous Execution of Highly Reactive Chemical Transformations in the Schlenkputer
DOI: 10.5281/zenodo.10327909
title: Autonomous Execution of Highly Reactive Chemical Transformations in the Schlenkputer
DOI: 10.5281/zenodo.10326089
title: An Integrated Self-Optimizing Programmable Chemical Synthesis and Reaction Engine
DOI: 10.5281/zenodo.10326090
title: An Integrated Self-Optimizing Programmable Chemical Synthesis and Reaction Engine
DOI: 10.5281/zenodo.10028553
title: North Carolina Zoning Jurisdiction Information

description: Information about 488 zoning jurisdictions in North Carolina collected by civic technology volunteers at Code for the Carolinas as a contribution to the National Zoning Atlas. Information for Guilford County and Charlotte and Triangle metro areas not included in this dataset. Data collected following the standard in this document:Bronin, Sara C. and Markley, Scott and Fader, Aline and Derickson, Evan, How to Make a Zoning Atlas 2.0: The Official Methodology of the National Zoning Atlas (June 13, 2023). Available at SSRN: https://ssrn.com/abstract=4476927 or http://dx.doi.org/10.2139/ssrn.4476927
DOI: 10.5281/zenodo.10028554
title: North Carolina Zoning Jurisdiction Information

description: Information about 488 zoning jurisdictions in North Carolina collected by civic technology volunteers at Code for the Carolinas as a contribution to the National Zoning Atlas. Information for Guilford County and Charlotte and Triangle metro areas not included in this dataset. Data collected following the standard in this document:Bronin, Sara C. and Markley, Scott and Fader, Aline and Derickson, Evan, How to Make a Zoning Atlas 2.0: The Official Methodology of the National Zoning Atlas (June 13, 2023). Available at SSRN: https://ssrn.com/abstract=4476927 or http://dx.doi.org/10.2139/ssrn.4476927
DOI: 10.48667/67ew-jb93
title: OPScI Outreach materials

description: &lsquo;Long-tail&rsquo; research is performed by individual PIs and small research teams, who often produce relatively small datasets comprised of diverse types of data. This research and the associated data are a fundamental part of realizing NASA&rsquo;s science goals and a key input over the life cycle of flight missions. However, in the past the long-tail has lacked the resources (more readily available to larger groups and missions) to adopt open science practices and follow data management guidelines such as FAIR, some aspects of which are now mandated by SPD-41A. Barriers traditionally faced by the long-tail include lack of incentives, money, and the time needed to learn and follow open science practices, combined with lack of guidance, expertise, and suitability of available platforms and tools. 
OPScI aims to help lower these barriers and promote the adoption of open science practices among long-tail researchers working in scientific disciplines across NASA&rsquo;s Science Mission Directorate. By providing tailored software services, guidance, and resources, OPScI will support and complement NASA&rsquo;s Transform to Open Science (TOPS) mission.
DOI: 10.5281/zenodo.10414260
title: RNA_train_data.tar.gz
DOI: 10.5281/zenodo.10414261
title: RNA_train_data.tar.gz
DOI: 10.48323/1ke7d-yxw09
title: Analysis of the phosphatidylinositol fatty acid composition in α-T-13′-COOH-treated macrophages

description: RAW264.7 cells were incubated with vehicle (DMSO, 'w/o') or 0.5 or 5.0 µM α-T-13′-COOH for 24 h. The fatty acid distribution of phosphatidylinositol was then analyzed by UPLC-MS/MS.
Raw analyst files (.wiff and .wiff.scan) of the UPLC-MS/MS results were uploaded, together with an Excel file for the sample list.
The methods and results were published in Liao et al., Int J Mol Sci, 2023 May 25;24(11):9229. doi: 10.3390/ijms24119229.
Lipids were extracted from RAW264.7 cell pellets by the successive addition of methanol, PBS (pH 7.4), chloroform, and saline (final ratio: 34:14:35:17). After the evaporation of the organic solvent, the remaining lipid fraction was dissolved in methanol, stored at −20 °C, and analyzed by UPLC-MS/MS. Internal standards: 1,2-dimyristoyl-sn-glycero-3-phosphatidylcholine (DMPC), 1,2-dimyristoyl-sn-glycero-3-phosphatidyl-ethanolamine (DMPE).
Phospholipids (PC, PE, PI, PS, PG) were separated on an Acquity UPLC BEH C8 column (130 Å, 1.7 μm, 2.1 × 100 mm; Waters, Milford, MA, USA) using an Acquity UPLC system (Waters), which was coupled to a QTRAP 5500 mass spectrometer (Sciex, Framingham, MA, USA) equipped with a Turbo V Ion Source and an electrospray ionization probe. Chromatographic separation was performed at a flow rate of 0.75 mL/min and at a column temperature of 45 °C. The mobile phase was composed of eluent A (acetonitrile/water, 95/5, with 2 mM ammonium acetate) and eluent B (water/acetonitrile, 90/10, with 2 mM ammonium acetate). The gradient was ramped from 70% to 80% A within 5 min and to 100% A within 2 min, followed by isocratic elution for another 2 min. Eluted phospholipids were detected upon the fragmentation of parental ions (PC: [M+OAc]−, all other phospholipids: [M-H]−) to fatty acid anions derived from sn-1 and sn-2 positions by multiple reaction monitoring using a QTRAP 5500 mass spectrometer. The ion spray voltage was set to −4500 V, the curtain gas to 30 psi, the collision gas to medium, and the heated capillary temperature to either 350 °C (PC), 500 °C (PI), 550 °C (PS, PG), or 650 °C (PE). The sheath gas pressure was set to 45 (PS) or 55 psi (PC, PE, PI, PG) and the auxiliary gas pressure was set to either to 75 psi (PC, PE, PI, PG) or 80 psi (PS). The declustering potential was set to −40 V (PS), −44 V (PC), −45 V (PG), or −50 V (PE, PI), the entrance potential to −10 eV (PC; PE, PI, PS, PG), the collision energy to −38 eV (PE), −46 eV (PC), −52 eV (PG), −56 eV (PS), or −62 eV (PI), and the collision cell exit potential to −11 V (PC, PI), −12 V (PE), −18 V (PG), or −20 V (PS).
The instruments were either operated with Analyst 1.6.2 (QTRAP 5500, Sciex) or Analyst 1.7.1 (QTRAP 6500+, Sciex).
DOI: 10.6073/pasta/9c23a8581a1850447efefb7654577dfd
title: MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Other Benthic Invertebrates, ongoing since 2005

description: The data presented here are the abundances of the major invertebrate herbivores and corallivores on Moorea coral reefs. Abundances are estimated in 4 fixed quadrats along 5 permanent transects at each of 4 habitats at 2 sites on each of the 3 shores of Moorea each year. Counts are made in one-meter-squared quadrats.This material uses data collected by the U.S. National Science Foundation's (NSF) Moorea Coral Reef Long Term Ecological Research (MCR LTER) site under Grant No. OCE 2224354 (and earlier awards). Additional financial support to the MCR LTER site was provided through a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2023).
DOI: 10.5281/zenodo.10414556
title: RNA_test_117_Preprocessing_using_AlphaFold2.tar.gz
DOI: 10.5281/zenodo.10414557
title: RNA_test_117_Preprocessing_using_AlphaFold2.tar.gz
DOI: 10.25505/fiz.icsd.cc2f48wr
title: CSD 2238444: Experimental Crystal Structure Determination

description: Related Article: Leonid Salamakha, Oksana Sologub, Berthold Stöger, Herwig Michor, Ernst Bauer, Peter Rogl, Stepan Mudry|2023|Dalton Trans.|52|6085|doi:10.1039/D3DT00292F
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2f4lsz
title: CSD 2238751: Experimental Crystal Structure Determination

description: Related Article: Leonid Salamakha, Oksana Sologub, Berthold Stöger, Herwig Michor, Ernst Bauer, Peter Rogl, Stepan Mudry|2023|Dalton Trans.|52|6085|doi:10.1039/D3DT00292F
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2dncl1
title: CSD 2224113: Experimental Crystal Structure Determination

description: Related Article: Yingdong Guan, Leixin Miao, Jingyang He, Jinliang Ning, Yangyang Chen□, Weiwei Xie, Jianwei Sun, Venkatraman Gopalan, Jun Zhu□, Xiaoping Wang, Nasim Alem, Qiang Zhang, Zhiqiang Mao|2023|J.Am.Chem.Soc.|145|4683|doi:10.1021/jacs.2c12848
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.48323/g7zte-q8d45
title: Analysis of the phosphatidylcholine fatty acid composition in α-T-13′-COOH-treated macrophages

description: RAW264.7 cells were incubated with vehicle (DMSO, 'w/o') or 0.5 or 5.0 µM α-T-13′-COOH for 24 h. The fatty acid distribution of phosphatidylcholine was then analyzed by UPLC-MS/MS.
Raw analyst files (.wiff and .wiff.scan) of the UPLC-MS/MS results were uploaded, together with an Excel file for the sample list.
The methods and results were published in Liao et al., Int J Mol Sci, 2023 May 25;24(11):9229. doi: 10.3390/ijms24119229.
Lipids were extracted from RAW264.7 cell pellets by the successive addition of methanol, PBS (pH 7.4), chloroform, and saline (final ratio: 34:14:35:17). After the evaporation of the organic solvent, the remaining lipid fraction was dissolved in methanol, stored at −20 °C, and analyzed by UPLC-MS/MS. Internal standards: 1,2-dimyristoyl-sn-glycero-3-phosphatidylcholine (DMPC), 1,2-dimyristoyl-sn-glycero-3-phosphatidyl-ethanolamine (DMPE).
Phospholipids (PC, PE, PI, PS, PG) were separated on an Acquity UPLC BEH C8 column (130 Å, 1.7 μm, 2.1 × 100 mm; Waters, Milford, MA, USA) using an Acquity UPLC system (Waters), which was coupled to a QTRAP 5500 mass spectrometer (Sciex, Framingham, MA, USA) equipped with a Turbo V Ion Source and an electrospray ionization probe. Chromatographic separation was performed at a flow rate of 0.75 mL/min and at a column temperature of 45 °C. The mobile phase was composed of eluent A (acetonitrile/water, 95/5, with 2 mM ammonium acetate) and eluent B (water/acetonitrile, 90/10, with 2 mM ammonium acetate). The gradient was ramped from 70% to 80% A within 5 min and to 100% A within 2 min, followed by isocratic elution for another 2 min. Eluted phospholipids were detected upon the fragmentation of parental ions (PC: [M+OAc]−, all other phospholipids: [M-H]−) to fatty acid anions derived from sn-1 and sn-2 positions by multiple reaction monitoring using a QTRAP 5500 mass spectrometer. The ion spray voltage was set to −4500 V, the curtain gas to 30 psi, the collision gas to medium, and the heated capillary temperature to either 350 °C (PC), 500 °C (PI), 550 °C (PS, PG), or 650 °C (PE). The sheath gas pressure was set to 45 (PS) or 55 psi (PC, PE, PI, PG) and the auxiliary gas pressure was set to either to 75 psi (PC, PE, PI, PG) or 80 psi (PS). The declustering potential was set to −40 V (PS), −44 V (PC), −45 V (PG), or −50 V (PE, PI), the entrance potential to −10 eV (PC; PE, PI, PS, PG), the collision energy to −38 eV (PE), −46 eV (PC), −52 eV (PG), −56 eV (PS), or −62 eV (PI), and the collision cell exit potential to −11 V (PC, PI), −12 V (PE), −18 V (PG), or −20 V (PS).
The instruments were either operated with Analyst 1.6.2 (QTRAP 5500, Sciex) or Analyst 1.7.1 (QTRAP 6500+, Sciex).
DOI: 10.34740/kaggle/dsv/7250493
title: AZP v1
DOI: 10.5281/zenodo.10414586
title: RNA_test_117_Preprocessing_using_native.tar
DOI: 10.5281/zenodo.10414585
title: RNA_test_117_Preprocessing_using_native.tar