cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23728/b2share.b143c287bb69482a90ababe7a5a8eb4a
title: Generated Patient Data for ARDS Model Training

description: Patient data that was populated as follows: The statistical distribution of curated data from the MIMIC-III dataset. Data based on these distributions was generated for 19 parameters. The data generated for these parameters was fed into a virtual patient model to predict a further 4 parameters: PaO2, PaCO2, pH, and HCO3. The outputs from the virtual patient was appended to the original generated data and can be used to train neural networks as inputs and expected outputs.
DOI: 10.6084/m9.figshare.22269652.v1
title: Neighborhood landscape context shapes local species richness patterns across continents.rar

description: Data and code for Lihe Li, et al. (2023) Neighborhood landscape context shapes local species richness patterns across continents
DOI: 10.5281/zenodo.7729427
title: Referenzen_IPF Jahresbericht_Appelhans_Moreno_03_2023

description: Zitierte Referenzen zum Jahresbericht 2023 von Appelhans und Moreno
DOI: 10.5281/zenodo.7729426
title: Referenzen_IPF Jahresbericht_Appelhans_Moreno_03_2023

description: Zitierte Referenzen zum Jahresbericht 2023 von Appelhans und Moreno
DOI: 10.5281/zenodo.7692270
title: Cloud Botany LES ensemble visualizations

description: <strong>Animations and graphs of the Cloud Botany ensemble of large eddy simulations</strong> The data is stored as a single zip file. When unpacked, the visualizations can be navigated in a web browser - start by opening index.html in the top directory. The simulations were performed with DALES, the Dutch Atmospheric Large Eddy Simulation, on Supercomputer Fugaku. For access to the data itself, see How To EUREC4A. <strong>Additional material</strong>: ERA5 data for the experiment region for the spring 2020 and JOANNE dropsonde data from the EUREC4A campaign, used to define the ranges for the Cloud Botany ensemble parameter space.
DOI: 10.5281/zenodo.7692269
title: Cloud Botany LES ensemble visualizations

description: <strong>Animations and graphs of the Cloud Botany ensemble of large eddy simulations</strong> The data is stored as a single zip file. When unpacked, the visualizations can be navigated in a web browser - start by opening index.html in the top directory. The simulations were performed with DALES, the Dutch Atmospheric Large Eddy Simulation, on Supercomputer Fugaku. For access to the data itself, see How To EUREC4A. <strong>Additional material</strong>: ERA5 data for the experiment region for the spring 2020 and JOANNE dropsonde data from the EUREC4A campaign, used to define the ranges for the Cloud Botany ensemble parameter space.
DOI: 10.6084/m9.figshare.21995213.v10
title: Files for Main Figure 5

description: Files for generating main figure 5 1. intergenic_TE_gene_5kb: Correlation results between intergenic TEs and +/- 5kb genes 2. TCGA_COAD_four_endpoint_survival: Survival data in four endpoints for TCGA-COAD patients 3: TCGA_COAD_gene: Gene TPM expression for TCGA-COAD patients 4: trinucleotide_mutational_profile: Summary of mutational profile in trinucleotide context in TCGA-COAD patients 5. Sensing_gene_TE_cor_GSVA_lasTEq: Correlation results between DNA-RNA sensing genes and TE quantified by lasTEq 6. Sensing_gene_TE_cor_GSVA_telescope: Correlation results between DNA-RNA sensing genes and TE quantified by telescope 7. GSVA_TCGA_COAD_sensing_gene: GSVA scores calculated for DNA-RNA sensing genes 8. 3_UTR: locations of 3'UTR of genes 9. 5_UTR: locations of 5'UTR of genes 10: TCGA_COAD_TE_exp_lasTEq: TE TPM expression of full TCGA-COAD cohort using lasTEq 11. Differently_measured_TEs: TEs greatly differently measured by lasTEq and Telescope
DOI: 10.5519/qd.mdfvbok5
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2695 records)
DOI: 10.6084/m9.figshare.22269652.v2
title: Neighborhood landscape context shapes local species richness patterns across continents

description: Data and code for analyses
DOI: 10.26126/intervals.d66xbk
title: Aerosol uptake and biomarkers of exposure - contrast

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Biomarkers of exposure, including respiratory physiology, markers of exposure in blood, in plasma and urine and markers of stress in serum were measured. This dataset contains the statistics resulting from the comparison of treatment and control groups.
DOI: 10.26126/intervals.jwiah3
title: Aerosol uptake and biomarkers of exposure - processed

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Biomarkers of exposure, including respiratory physiology, markers of exposure in blood, in plasma and urine and markers of stress in serum were measured. This dataset includes descriptive statistics at the group level.
DOI: 10.26126/intervals.apkiy4
title: Aerosol uptake and biomarkers of exposure - raw

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Biomarkers of exposure, including respiratory physiology, markers of exposure in blood, in plasma and urine and markers of stress in serum were measured. This dataset includes single measurements for each animal.
DOI: 10.26126/intervals.27dpbc
title: BALF - contrast

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Free lung cells (FLCs) in the bronchoalveolar lavage fluid were characterized and quantified by flow cytometry and BALF was characterized using targeted proteomics. This dataset contains the statistics resulting from the comparison of treatment and control groups.
DOI: 10.26126/intervals.73o85i
title: BALF - processed

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Free lung cells (FLCs) in the bronchoalveolar lavage fluid were characterized and quantified by flow cytometry and BALF was characterized using targeted proteomics. This dataset includes descriptive statistics at the group level.
DOI: 10.26126/intervals.qpsofn
title: BALF - raw

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Free lung cells (FLCs) in the bronchoalveolar lavage fluid were characterized and quantified by flow cytometry and BALF was characterized using targeted proteomics. This dataset includes single measurements for each animal.
DOI: 10.26126/intervals.n8so6j
title: Body weight - contrast

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). The weight of the animals was measured during the whole duration of the study. This dataset contains the statistics resulting from the comparison of treatment and control groups.
DOI: 10.26126/intervals.qo2h3k
title: Body weight - processed

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). The weight of the animals was measured during the whole duration of the study. This dataset includes descriptive statistics at the group level.
DOI: 10.26126/intervals.hdwfin
title: Body weight - raw

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). The weight of the animals was measured during the whole duration of the study. This dataset includes single measurements for each animal at different time points throughout the study.
DOI: 10.26126/intervals.n4jk4f
title: Clinical chemistry - processed

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Clinical chemistry parameters to monitor kidney and liver function and metabolic profiles were assessed. This dataset includes descriptive statistics at the group level.
DOI: 10.26126/intervals.nl4k72
title: Clinical chemistry - contrast

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). linical chemistry parameters to monitor kidney and liver function and metabolic profiles were assessed. This dataset contains the statistics resulting from the comparison of treatment and control groups.
DOI: 10.26126/intervals.df3c4i
title: Clinical chemistry - raw

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Clinical chemistry parameters to monitor kidney and liver function and metabolic profiles were assessed. This dataset includes single measurements for each animal.
DOI: 10.26126/intervals.2glzjq
title: Food consumption - contrast

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Food consumption was monitored during the whole study. This dataset contains the statistics resulting from the comparison of treatment and control groups.
DOI: 10.26126/intervals.nxt2vc
title: Food consumption - processed

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Food consumption was monitored during the whole study. This dataset includes descriptive statistics at the group level.
DOI: 10.26126/intervals.iaax2b
title: Food consumption - raw

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Food consumption was monitored during the whole study. This dataset includes single measurements for each animal cage.
DOI: 10.26126/intervals.ccpyo2
title: Hematology - contrast

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Blood cells were characterized and quantified (hematology). This dataset contains the statistics resulting from the comparison of treatment and control groups.
DOI: 10.26126/intervals.bk8q68
title: Hematology - processed

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Blood cells were characterized and quantified (hematology). This dataset includes descriptive statistics at the group level.
DOI: 10.26126/intervals.tgtbox
title: Hematology - raw

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Blood cells were characterized and quantified (hematology). This dataset includes single measurements for each animal.
DOI: 10.26126/intervals.ni27u5
title: Histology - contrast

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Histopathological evaluation of respiratory and non respiratory organs was assessed according to OECD TG 413 subchronic inhalation toxicity. This dataset contains the statistics resulting from the comparison of treatment and control groups.
DOI: 10.26126/intervals.4gweoy
title: Histology - raw

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Histopathological evaluation of respiratory and non respiratory organs was assessed according to OECD TG 413 subchronic inhalation toxicity. This dataset includes single measurements for each animal.
DOI: 10.26126/intervals.hic8b2
title: Histology - processed

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Histopathological evaluation of respiratory and non respiratory organs was assessed according to OECD TG 413 subchronic inhalation toxicity. This dataset includes descriptive statistics at the group level.
DOI: 10.26126/intervals.g4occs
title: Liver iTRAQ set 1 - contrast

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design).
The liver proteome was characterized using iTRAQ (untargeted analysis). iTRAQ set 1 contains all samples from the 90-day time point: each 8-plex labeling replicate set includes one sample of each 90-day exposed sample and one pooled reference mix containing all replicates from the 90-day time point. This dataset contains the statistics resulting from the comparison of treatment and control groups.
DOI: 10.26126/intervals.o2eh74
title: Liver iTRAQ set 1 - processed

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design).
The liver proteome was characterized using iTRAQ (untargeted analysis). iTRAQ set 1 contains all samples from the 90-day time point: each 8-plex labeling replicate set includes one sample of each 90-day exposed sample and one pooled reference mix containing all replicates from the 90-day time point. This dataset is the normalized intensity values for each identified protein and each sample.
DOI: 10.26126/intervals.umjm7s
title: Liver iTRAQ set 1 - raw

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design).
The liver proteome was characterized using iTRAQ (untargeted analysis). iTRAQ set 1 contains all samples from the 90-day time point: each 8-plex labeling replicate set includes one sample of each 90-day exposed sample and one pooled reference mix containing all replicates from the 90-day time point. The full dataset is available in PRIDE under the accession number PXD008423. This dataset includes the acquisition files (RAW format).
DOI: 10.26126/intervals.x4y6j6
title: Liver iTRAQ set 2 - contrast

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design).
The liver proteome was characterized using iTRAQ (untargeted analysis). iTRAQ set 2 contains only female rat samples monitoring the exposure and recovery effect: each 8-plex labeling replicate set includes one sample of each 90 + 42-day sample and the corresponding female sample from the 90-day time point. This dataset contains the statistics resulting from the comparison of treatment and control groups.
DOI: 10.26126/intervals.qeort2
title: Liver iTRAQ set 2 - processed

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design).
The liver proteome was characterized using iTRAQ (untargeted analysis). iTRAQ set 2 contains only female rat samples monitoring the exposure and recovery effect: each 8-plex labeling replicate set includes one sample of each 90 + 42-day sample and the corresponding female sample from the 90-day time point. The full dataset is available in PRIDE under the accession number PXD008423. This dataset includes the acquisition files (RAW format).
DOI: 10.26126/intervals.b7mkrx
title: Liver iTRAQ set 2 - raw

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design).
The liver proteome was characterized using iTRAQ (untargeted analysis). iTRAQ set 2 contains only female rat samples monitoring the exposure and recovery effect: each 8-plex labeling replicate set includes one sample of each 90 + 42-day sample and the corresponding female sample from the 90-day time point. The full dataset is available in PRIDE under the accession number PXD008423. This dataset includes the acquisition files (RAW format).
DOI: 10.26126/intervals.i35egq
title: Liver lipidomics - raw

description: This dataset was generated in an in vivo OECD TG 413 90-days nose-only inhalation study where Sprague-Dawley rats were exposed to either 3R4F cigarette smoke or aerosols of the carbon heated tobacco product (CHTP) 1.2, a heat-not-burn platform. The study contains additional test groups that were examined following a systems toxicology approach (please refer to the study page for more detail on the study design). Liver lipids extracted were quantified by shotgun lipidomics by Zora Biosciences according to their internal SOPs. This dataset includes single measurements for each animal.