cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26719008.v1
title: Additional file 1 of Optimal trade-off between boosted tolerance and growth fitness during adaptive evolution of yeast to ethanol shocks

description: Supplementary Material 1: Table S1. List of Saccharomyces cerevisiae strains. Table listing all S. cerevisiae strains used in this study, including parental strains, evolved clones, and genetically-modified yeasts. Table S2. Flow cytometry measurements in competitions with 24% v/v ethanol treatments. The proportion of each competitor is shown before (initial) and after the 24% ethanol treatment and outgrowth (final). Selection coefficients were calculated (S) and normalized with the data obtained for the progenitor. Two datasets were generated: one for the Progenitor, P1c, P2c, P3c without acclimation, and other with the same strains subjected to prior acclimation with ethanol shocks (see text). The data was used to generate the graphics of Fig. 1C and D. Table S3. Results from WGS and variant calling of P1c, P2c, P3c, and P4c. Mutations found in the evolved clones are shown. Coordinates are related to the PE-2_H4 parental strain (GenBank accession number GCA_905220315.1). Table S4. PCR oligonucleotides used in this study. Table S5. Flow cytometry measurements for competition assays 1–3. Data from competitions 1 (green), 2 (red), and 3 (blue) display the proportions of tester-GFP and the indicated competitor at the initial and final points of the assay. Selection coefficients (S) were calculated and normalized with the S obtained for the respective parental strain. For competitions 2 and 3 the S was expressed per cell doubling. Table S6. Microplate growth assay. OD600 was recorded every 15 min. on the Tecan Sunrise™ microplate reader. Each Strain was assayed in 3–4 replicates in YPS with 8% (v/v) ethanol, or in YPS without ethanol. Table S7. Fitness estimations for cyr1A1474T/usv1Δ. The PE-2_H4 (parental) and cyr1A1474T/usv1Δ were competed against the PE-2_H4-GFP through five passages in YPS with 8% (v/v) ethanol or without ethanol. Flow cytometry records of the competitors’ proportions and cell counting were taken at the initial and final points of each transfer, allowing the calculation of selection coefficients (S) during each passage and a cumulative S during serial transfers 2–5. By plotting the cumulative S per number of calculated generations at the end of each passage, selective coefficients per cell doublings (S/d) were calculated from the trendline fitted into the data points. Thereby an S per doubling was calculated for PE-2_H4 as -0.0079 for the competition with the PE-2_H4-GFP at 8% (v/v) ethanol and as 0.0049 for the competition in YPS without ethanol. Based on these numbers, a “S correction factor for PE-2_H4” was calculated accounting for cumulative cell doublings at each passage and used to normalize the cumulative S obtained for cyr1A1474T/usv1Δ in a competition with PE-2_H4_GFP. This normalization allows to express the cyr1A1474T/usv1Δ fitness (S) in comparison to PE-2_H4 and to discount any fitness effect of GFP expression in the PE-2_H4-GFP strain. The normalized cumulative S for cyr1A1474T/usv1Δ was plotted in Fig. 6C.
DOI: 10.6084/m9.figshare.26720073.v1
title: Additional file 3 of Genome-wide identification and expression analysis of the Eriobotrya japonica TIFY gene family reveals its functional diversity under abiotic stress conditions

description: Supplementary Material 3: Table S3. EjTIFY Duplicate Genes Pair Ka/ ks Values.
DOI: 10.6084/m9.figshare.26720511.v1
title: Additional file 6 of Evidence on the ecological and physical effects of built structures in shallow, tropical coral reefs: a systematic map

description: Supplementary Material 6
DOI: 10.15468/dl.nwnmn2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.161262 -34.392698, 147.161262 -34.399435, 147.163508 -34.399435, 147.163508 -34.392698, 147.161262 -34.392698))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071097-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26719203
title: Additional file 2 of A multilevel investigation to reveal the regulatory mechanism of lignin accumulation in juice sac granulation of pomelo

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26719809
title: Additional file 2 of Comprehensive genetic analysis of facioscapulohumeral muscular dystrophy by Nanopore long-read whole-genome sequencing

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26639500.v1
title: Additional file 7 of MBD4 loss results in global reactivation of promoters and retroelements with low methylated CpG density

description: Additional file 7: Supplementary Table 6. Listing of the most significantly differentially methylated regions (DMR, P &lt; 0.01) between MEFs WT and KO for Mbd4. The following information are indicated for each DMR: genomic annotation, methylation rate (KO, WT, WT/KO) and variation (KO, WT), coverage depth and variation (KO, WT), number of CpG, number of uncovered CpG (KO, WT).
DOI: 10.6084/m9.figshare.26639506.v1
title: Additional file 8 of MBD4 loss results in global reactivation of promoters and retroelements with low methylated CpG density

description: Additional file 8: Supplementary Tables 7 and 8. Repeat analyses of MeDIP-seq (7) and hMeDIP-seq (8) datasets. These tables list each mouse repeat family with the following informations: Repeat-Masker family name, raw read counts (input-WT, input-KO, IP-WT, IP-KO), normalized read counts (input-WT, input-KO, IP-WT, IP-KO), log2-ratio (KO/WT).
DOI: 10.6084/m9.figshare.26721492.v1
title: Additional file 2 of Exploring the mechanism of dendrobine in treating metabolic associated fatty liver disease based on network pharmacology and experimental validation

description: Supplementary Material 2.
DOI: 10.3886/e184826
title: Supplementary data for: Universal Basic Income: A Dynamic Assessment

description: This contains the empirical data and code for "Universal Basic Income: A Dynamic Assessment" (AER-2022-1099). The rest of the codes are available in openicpsr-184125.
DOI: 10.3886/e184826v2-156030
title: Supplementary data for: Universal Basic Income: A Dynamic Assessment

description: This contains the empirical data and code for "Universal Basic Income: A Dynamic Assessment" (AER-2022-1099). The rest of the codes are available in openicpsr-184125.
DOI: 10.6084/m9.figshare.26721309
title: Additional file 2 of Enhancer selectivity across cell types delineates three functionally distinct enhancer-promoter regulation patterns

description: Additional file 2: Table S1. Summary of data used in this study.
DOI: 10.15468/dl.b6hjyn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.610422 -34.392698, 147.610422 -34.399435, 147.614913 -34.399435, 147.614913 -34.392698, 147.610422 -34.392698))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071098-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26719152
title: Additional file 2 of The MYB family and their response to abiotic stress in ginger (Zingiber officinale Roscoe)

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26720442
title: Additional file 1 of Genetically determined gut microbiota associates with pulmonary arterial hypertension: a Mendelian randomization study

description: Additional file 1.
DOI: 10.15468/dl.bk8dxy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.005682 -34.392698, 148.005682 -34.397189, 148.007928 -34.397189, 148.007928 -34.392698, 148.005682 -34.392698))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071100-240626123714530/datasets/export for details.
DOI: 10.15468/dl.qud2m4
title: Occurrence Download

description: A dataset containing 11992 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nestor notabilis Gould, 1856"
 ]
}

 The dataset includes 11992 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071099-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26720511
title: Additional file 6 of Evidence on the ecological and physical effects of built structures in shallow, tropical coral reefs: a systematic map

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.26720520.v1
title: Additional file 9 of Evidence on the ecological and physical effects of built structures in shallow, tropical coral reefs: a systematic map

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.26761658
title: Additional file 12 of Palmitoyltransferase ZDHHC6 promotes colon tumorigenesis by targeting PPARγ-driven lipid biosynthesis via regulating lipidome metabolic reprogramming

description: Supplementary Material 12
DOI: 10.6084/m9.figshare.26718726
title: Additional file 1 of Seasonal variation of Salmonella enterica prevalence in milk and cottage cheese along the dairy value chain in three regions of Ethiopia

description: Supplementary Material 1
DOI: 10.15468/dl.5yhfrz
title: Occurrence Download

description: A dataset containing 1059330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-06-21",
 "EventDate is less than or equal to 2024-07-21",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 1059330 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071093-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26719362.v1
title: Additional file 2 of A DNA barcode reference library of Croatian mosquitoes (Diptera: Culicidae): implications for identification and delimitation of species, with notes on the distribution of potential vector species

description: Supplementary Material 2. Dataset S1. Nucleotide alignments of COI and ITS2 datasets for all analysed specimens.
DOI: 10.6084/m9.figshare.26718210.v1
title: Additional file 2 of Reversing the directionality of reactions between non-oxidative pentose phosphate pathway and glycolytic pathway boosts mycosporine-like amino acid production in Saccharomyces cerevisiae

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26720571.v1
title: Additional file 2 of Epitranscriptome insights into Riccia fluitans L. (Marchantiophyta) aquatic transition using nanopore direct RNA sequencing

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26720571
title: Additional file 2 of Epitranscriptome insights into Riccia fluitans L. (Marchantiophyta) aquatic transition using nanopore direct RNA sequencing

description: Supplementary Material 2
DOI: 10.3886/e208526
title: NIRF and QS ranking data

description: This data set has the details of scores of the NIRF 2023, 2024, and QS 2025 top 100 rankings
DOI: 10.3886/e208526v1
title: NIRF and QS ranking data

description: This data set has the details of scores of the NIRF 2023, 2024, and QS 2025 top 100 rankings
DOI: 10.6084/m9.figshare.26721765
title: Additional file 2 of Work pressure, coping styles and occupational burnout among Chinese police officers: a meta-analytic review

description: Supplementary Material 2
DOI: 10.15468/dl.ruk6wz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.308865 -34.392698, 148.308865 -34.399435, 148.311111 -34.399435, 148.311111 -34.394944, 148.315603 -34.394944, 148.315603 -34.392698, 148.308865 -34.392698))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071101-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26719647.v1
title: Additional file 1 of Delivering the diagnosis of multiple system atrophy: a multicenter survey on Japanese neurologists’ perspectives

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26725580
title: Additional file 1 of Comparison of testing methods assessing the in vitro efficacy of the combination of aztreonam with avibactam on multidrug-resistant Gram-negative bacilli

description: Supplementary Material 1.
DOI: 10.15468/dl.cmk8wm
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taxus wallichiana var. chinensis (Pilg.) Florin"
 ]
}

 The dataset includes 197 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071104-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eywy9v
title: Occurrence Download

description: A dataset containing 12156 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Hyoscyamus niger L."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12156 records from 197 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013679-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1lhoio
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echeveria elegans Rose"
 ]
}

 The dataset includes 58 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011419-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njikk4
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cola baldwinii Jongkind"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001846-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uztpeh
title: Occurrence Download

description: A dataset containing 770 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhadinaea decorata (Günther, 1858)"
 ]
}

 The dataset includes 770 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013679-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eam9hp
title: Occurrence Download

description: A dataset containing 27451713 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bursaphelenchus xylophilus Steiner & Buhrer, 1934, Bursaphelenchus xylophilus (Steiner & Buhrer, 1934), 1970, Bursaphelenchus pinophilus Brzeski & Baujard, 1997, Bursaphelenchus sycophilus Kanzaki, Tanaka, Giblin Davis & Davies, 2014, Deladenus siricidicola Bedding, 1968, Hemiberlesia pitysophila Takagi, 1969, Lissorhoptrus brevirostris Kuschel, 1951, Matsucoccus matsumurae (Kuwana, 1905), Matsucoccus matsumurae Cockerell, 1909, Matsucoccus matsunurae Zhao, 1989, Matsococcus matsumurae Gertsson, 2001, Mustela furo Linnaeus, 1758, Mustela gulo Linnaeus, 1758, Mustela huro F.G.Cuvier, 1823, Mytilopsis trautwineana (Tryon, 1866), Neovison vison (Schreber, 1777), Oligonychus Berlese, 1886, Orconectes limosus (Rafinesque, 1817), Orconectes rusticus (Girard, 1852), Orthriophis taeniurus (Cope, 1861), Passer domesticus (Linnaeus, 1758), Scirtothrips perseae Nakahara, 1997, Sternochetus frigidus, Sturnus vulgaris Linnaeus, 1758, Saurus vulgaris Cloquet, 1827, Stenus vulgaris Puthz, 1984, Trichomyrmex destructor (Jerdon, 1851))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
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}

 The dataset includes 27451713 records from 1684 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068886-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccq5r2p
title: CCDC 660922: Experimental Crystal Structure Determination

description: Related Article: M.Ohba, K.Yoneda, G.Agusti, M.C.Munoz, A.B.Gaspar, J.A.Real, M.Yamasaki, H.Ando, Y.Nakao, S.Sakaki, S.Kitagawa|2009|Angew.Chem.,Int.Ed.|48|4767|doi:10.1002/anie.200806039
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccqz2lb
title: CCDC 684312: Experimental Crystal Structure Determination

description: Related Article: M.Ohba, K.Yoneda, G.Agusti, M.C.Munoz, A.B.Gaspar, J.A.Real, M.Yamasaki, H.Ando, Y.Nakao, S.Sakaki, S.Kitagawa|2009|Angew.Chem.,Int.Ed.|48|4767|doi:10.1002/anie.200806039
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccryw8t
title: CCDC 713907: Experimental Crystal Structure Determination

description: Related Article: G.Bastiat, J.-C.Leroux|2009|J.Mater.Chem.|19|3867|doi:10.1039/b822657a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccryw9v
title: CCDC 713908: Experimental Crystal Structure Determination

description: Related Article: G.Bastiat, J.-C.Leroux|2009|J.Mater.Chem.|19|3867|doi:10.1039/b822657a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrk3m0
title: CCDC 701642: Experimental Crystal Structure Determination

description: Related Article: J.E.Gautrot, P.Hodge, M.Helliwell, J.Raftery, D.Cupertino|2009|J.Mater.Chem.|19|4148|doi:10.1039/b901853k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.30622.25925
title: Prisons Bulletin 21-05-28
DOI: 10.5517/ccrk3n1
title: CCDC 701643: Experimental Crystal Structure Determination

description: Related Article: J.E.Gautrot, P.Hodge, M.Helliwell, J.Raftery, D.Cupertino|2009|J.Mater.Chem.|19|4148|doi:10.1039/b901853k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs1t0m
title: CCDC 716720: Experimental Crystal Structure Determination

description: Related Article: Z.Hulvey, E.H.L.Falcao, J.Eckert, A.K.Cheetham|2009|J.Mater.Chem.|19|4307|doi:10.1039/b900879a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.10699.31520
title: tugas demografi
DOI: 10.5517/ccrt0r9
title: CCDC 709241: Experimental Crystal Structure Determination

description: Related Article: A.Pal, H.Basit, S.Sen, V.K.Aswal, S.Bhattacharya|2009|J.Mater.Chem.|19|4325|doi:10.1039/b903407b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrbj0l
title: CCDC 695299: Experimental Crystal Structure Determination

description: Related Article: R.Thomas, S.Varghese, G.U.Kulkarni|2009|J.Mater.Chem.|19|4401|doi:10.1039/b902937k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrbj1m
title: CCDC 695300: Experimental Crystal Structure Determination

description: Related Article: R.Thomas, S.Varghese, G.U.Kulkarni|2009|J.Mater.Chem.|19|4401|doi:10.1039/b902937k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrbj2n
title: CCDC 695301: Experimental Crystal Structure Determination

description: Related Article: R.Thomas, S.Varghese, G.U.Kulkarni|2009|J.Mater.Chem.|19|4401|doi:10.1039/b902937k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.