cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5018448
title: Predators mitigate the destabilising effects of heatwaves on multitrophic stream communities

description: Abstract Amidst the global extinction crisis, climate change will additionally expose ecosystems to more frequent and intense extreme climatic events, such as heatwaves. Yet, whether predator species loss—a prevailing characteristic of the extinction crisis—will exacerbate the ecological consequences of extreme climatic events remains largely unknown. Here, we show that predator species loss can interact with heatwaves to affect the compositional stability of ecosystems. By exposing multitrophic stream communities to realistic current and future heatwaves—locally informed by weather station data and downscaled regional climate projections—in the presence and absence of an apex fish predator, we found that heatwaves destabilised algal communities by homogenising them in space. However, this only happened when predators were absent. Additional heatwave impacts on multiple aspects of stream communities—including changes to the structure of algal and macroinvertebrate communities, total algal biomass, and the temporal variability of algal biomass—were not apparent during heatwaves and emerged only after the heatwaves had passed. Taken together, our results suggest that, though the ecological consequences of heatwaves can amplify over time as their impacts propagate through biological interaction networks, those impacts can be mitigated by the presence of predators. These findings underscore the importance of conserving trophic structure and the integrity of biological communities, and highlight the considerable potential for species extinctions to amplify the effects of climate change and extreme events. Methods The dataset contains the Chlorophyll a concentrations of mesocosms measured during a multifactorial experiment from terracotta tiles with a Benthotorch fluorometer, as well as data on leaf dry mass decomposition, and macroinvertebrate community composition, richness, and abundance. We conducted an experiment looking at the combined effects of predator loss and heatwaves on multiple aspects of aquatic communities in semi-open mesocosms with immigration and emigration from the adjacent Horonai stream, in Tomakomai experimental forest, Hokkaido, Japan. Our focal predator was <em>Cottus nozawae</em>, a freshwater sculpin. We exposed 2/3 of our 48 mesocosms to heatwaves based on either observed current or projected future heatwaves and tested for interactions between predator presence/absence and heatwaves. Our dataset also contains algal time series for different functional groups (based on fluoroprobe chlorophyll a data) across our experiment, including dates that were not the focus of our analyses. See Methods section in the associated manuscript for details on data processing and the measurement of different experimental variables. Usage notes See readme file for further details and 'data descriptions.csv' file for descriptions of data structure.
DOI: 10.5281/zenodo.5018447
title: Predators mitigate the destabilising effects of heatwaves on multitrophic stream communities

description: Abstract Amidst the global extinction crisis, climate change will additionally expose ecosystems to more frequent and intense extreme climatic events, such as heatwaves. Yet, whether predator species loss—a prevailing characteristic of the extinction crisis—will exacerbate the ecological consequences of extreme climatic events remains largely unknown. Here, we show that predator species loss can interact with heatwaves to affect the compositional stability of ecosystems. By exposing multitrophic stream communities to realistic current and future heatwaves—locally informed by weather station data and downscaled regional climate projections—in the presence and absence of an apex fish predator, we found that heatwaves destabilised algal communities by homogenising them in space. However, this only happened when predators were absent. Additional heatwave impacts on multiple aspects of stream communities—including changes to the structure of algal and macroinvertebrate communities, total algal biomass, and the temporal variability of algal biomass—were not apparent during heatwaves and emerged only after the heatwaves had passed. Taken together, our results suggest that, though the ecological consequences of heatwaves can amplify over time as their impacts propagate through biological interaction networks, those impacts can be mitigated by the presence of predators. These findings underscore the importance of conserving trophic structure and the integrity of biological communities, and highlight the considerable potential for species extinctions to amplify the effects of climate change and extreme events. Methods The dataset contains the Chlorophyll a concentrations of mesocosms measured during a multifactorial experiment from terracotta tiles with a Benthotorch fluorometer, as well as data on leaf dry mass decomposition, and macroinvertebrate community composition, richness, and abundance. We conducted an experiment looking at the combined effects of predator loss and heatwaves on multiple aspects of aquatic communities in semi-open mesocosms with immigration and emigration from the adjacent Horonai stream, in Tomakomai experimental forest, Hokkaido, Japan. Our focal predator was <em>Cottus nozawae</em>, a freshwater sculpin. We exposed 2/3 of our 48 mesocosms to heatwaves based on either observed current or projected future heatwaves and tested for interactions between predator presence/absence and heatwaves. Our dataset also contains algal time series for different functional groups (based on fluoroprobe chlorophyll a data) across our experiment, including dates that were not the focus of our analyses. See Methods section in the associated manuscript for details on data processing and the measurement of different experimental variables. Usage notes See readme file for further details and 'data descriptions.csv' file for descriptions of data structure.
DOI: 10.5281/zenodo.4572620
title: Figure data of 'Epitaxy of advanced nanowire quantum devices'

description: Data belonging to 'Epitaxy of advanced nanowire quantum devices' including metadata files are in this ZIP folder
DOI: 10.5281/zenodo.5018586
title: Missing Citations in COCI: Publishers Analytics Result

description: This dataset contains a JSON file containing the results retrieved through the software developed by the authors. We opted for JSON file format to store the obtained data, since this format allows the storage of heterogeneous information in a complex and structured way. The four main structures stored in the present file are: 1) "publishers", a list of dictionaries representing each publisher encountered; 2) "citations", a dictionary containing two lists, the one storing the validated citational data and the other storing the still invalid citational data. Each processed citation is represented as a dictionary. 3) "total_num_of_valid_citations", whose value is the number of citational data that could be validated throughout the process implemented by our software. 4) "external_data_for_unrecognized_prefixes": a dictionary of dictionaries representing the publishers we didn't find on Crossref, but that were identified through other online services. We used as input material open data from the dataset “Citations to invalid DOI-identified entities obtained from processing DOI-to-DOI citations to add in COCI”.
DOI: 10.5281/zenodo.4735638
title: Missing Citations in COCI: Publishers Analytics Result

description: This dataset contains a JSON file containing the results retrieved through the software developed by the authors. We opted for JSON file format to store the obtained data, since this format allows the storage of heterogeneous information in a complex and structured way. The four main structures stored in the present file are: 1) "publishers", a list of dictionaries representing each publisher encountered; 2) "citations", a dictionary containing two lists, the one storing the validated citational data and the other storing the still invalid citational data. Each processed citation is represented as a dictionary. 3) "total_num_of_valid_citations", whose value is the number of citational data that could be validated throughout the process implemented by our software. 4) "external_data_for_unrecognized_prefixes": a dictionary of dictionaries representing the publishers we didn't find on Crossref, but that were identified through other online services. We used as input material open data from the dataset “Citations to invalid DOI-identified entities obtained from processing DOI-to-DOI citations to add in COCI”.
DOI: 10.5281/zenodo.5018190
title: Spatial and functional structure of an entire ant assemblage in a lowland Panamanian rainforest

description: Ants are a major ecological group in tropical rainforests. Few studies in the Neotropics have documented the distribution of ants from the ground to the canopy, and none have included the understorey. A previous analysis of an intensive arthropod study in Panama, involving 11 sampling methods, showed that the factors influencing ant beta diversity (i.e., changes in assemblage composition) were, in decreasing order of importance, the vertical (height), temporal (season), and horizontal (geographic distance) dimensions. In the present study, we went one step further and aimed (1) to identify the best sampling methods to study the entire ant assemblage across the three strata, (2) to test if all strata show a similar horizontal beta diversity and (3) to analyze the functional structure of the entire ant assemblage. We identified 405 ant species from 11 subfamilies and 68 genera. Slightly more species were sampled in the canopy than on the ground; they belonged to distinct sub-assemblages. The understorey fauna was mainly a mixture of species found in the other two strata. The horizontal beta diversity between sites was similar for the three strata. About half of the ant species foraged in two (29%) or three (25%) strata. A single method, aerial flight interception traps placed alongside tree trunks, acting as arboreal pitfall traps, collected half of the species and reflected the vertical stratification. Using the functional traits approach, we observed that generalist species with mid-sized colonies were by far the most numerous (31%), followed by ground- or litter-dwelling species, either specialists (20%), or generalists (16%), and arboreal species, either generalists (19%) or territorially dominant (8%), and finally army ants (5%). Our results reinforce the idea that a proper understanding of the functioning of ant assemblages requires the inclusion of arboreal ants in survey programs.
DOI: 10.5281/zenodo.5018189
title: Spatial and functional structure of an entire ant assemblage in a lowland Panamanian rainforest

description: Ants are a major ecological group in tropical rainforests. Few studies in the Neotropics have documented the distribution of ants from the ground to the canopy, and none have included the understorey. A previous analysis of an intensive arthropod study in Panama, involving 11 sampling methods, showed that the factors influencing ant beta diversity (i.e., changes in assemblage composition) were, in decreasing order of importance, the vertical (height), temporal (season), and horizontal (geographic distance) dimensions. In the present study, we went one step further and aimed (1) to identify the best sampling methods to study the entire ant assemblage across the three strata, (2) to test if all strata show a similar horizontal beta diversity and (3) to analyze the functional structure of the entire ant assemblage. We identified 405 ant species from 11 subfamilies and 68 genera. Slightly more species were sampled in the canopy than on the ground; they belonged to distinct sub-assemblages. The understorey fauna was mainly a mixture of species found in the other two strata. The horizontal beta diversity between sites was similar for the three strata. About half of the ant species foraged in two (29%) or three (25%) strata. A single method, aerial flight interception traps placed alongside tree trunks, acting as arboreal pitfall traps, collected half of the species and reflected the vertical stratification. Using the functional traits approach, we observed that generalist species with mid-sized colonies were by far the most numerous (31%), followed by ground- or litter-dwelling species, either specialists (20%), or generalists (16%), and arboreal species, either generalists (19%) or territorially dominant (8%), and finally army ants (5%). Our results reinforce the idea that a proper understanding of the functioning of ant assemblages requires the inclusion of arboreal ants in survey programs.
DOI: 10.25810/ns7n-vh24.17
title: African Newspaper Coverage of Climate Change or Global Warming, 2004-2021 - May 2021

description:         The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.14829085
title: Fedosov_et_al_supplementary_materials.zip from A phylogeny-aware approach reveals unexpected venom components in divergent lineages of cone snails

description: Archive with supplementary figures (8), and supplementary tables (4). Captions for each item are provided in the file.
DOI: 10.5281/zenodo.5018699
title: Gaidropsarus macrophthalmus SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5018698
title: Gaidropsarus macrophthalmus SPAdes preassembly

description: .
DOI: 10.5066/p971rl9l
title: Computer programs for the assessment of coal resources (ver. 2.0, April 2021)

description: The USGS assessment and methodology reports cited within this software release require extensive processing using computational methods and modeling. The most demanding aspects of the modeling were performed using publicly available software: SGeMS and GSLIB (See the 'related External Resources' section on this webpage to learn more about this software). This publication releases the FORTRAN source code of 15 supplementary computer programs that are required to perform the more specific aspects of the modeling. Upon downloading a program, the user needs to use a FORTRAN compiler for generating the executable code. The tasks performed by these FORTRAN programs are: blankgridsis, for blanking of several realizations of an attribute according to as many sequential indicator realizations of coal bed presence/absence; coverclass, for classification of cell cover into 4 classes intended to be used for determining mineable resources; decluster, for declustering of data with preferential sampling; dif2sur, for calculation of thickness between a deterministic surface, such as surface elevation, and several realizations of another attribute, such as the top of the oxidation zone; EtypeSGeMSsis, for preparation of grids for nine statistics node by node; g2gtrim, for blanking one grid based on the information of another, typically an SGeMS simulation file based on kriging standard error; kvar2ksd, for replacing the second of 2 columns by its square root, which is useful to convert variance to standard deviation in kriging grid; mining, for modeling mineable coal resources for both surface and deep methods; multgridconst, for multiplying a grid by a constant; pinchout, for wedging out realizations of coal seam thickness inside a convex polygon specified by the user; reliabcurve, for tabulating cumulative tonnage cell by increasing 5-95 spread; resourcesCsis, for calculating total coal resources per tonnage realization; thick2ton, for converting thickness realizations to tonnage realizations; trim, for blanking of file records base on the information of one column in the same file.
DOI: 10.6084/m9.figshare.14829081
title: Phenology observations of deciduous tree species in Slovenia from 2004 to 2019

description: <b>This dataset represents phenology observations of several tree species in Slovenia from 2004 to 2019 for some tree species, and 2010 to 2019 for other tree species.</b><br>The following tree species (or group of tree species) are included in this dataset: European beech (Fagus sylvatica), silver birch (<i>Betula pendula</i>), lime tree (mainly <i>Tilia platyphyllos</i>), common ash (<i>Fraxinus excelsior</i>), oak (pedunculate oak and sessile oak, i.e. <i>Quercus robur</i> and <i>Quercus petraea</i>, respectively) and aspen (<i>Populus tremula</i>)<br>The dataset is contained in a Microsoft Excel workbook with two worksheets, one (named "Phenology observations") with the station names and codes as well as the actual phenology observations (start of season and end of season), and the second worksheet (named "Coordinates & site description") contains geographic coordinates of each station with site characteristics of each combination of station and tree species.<br><b>The column names are the following:</b>- Station code: unique for each station;<br>- Station name: unique for each station, matching one-one the station codes;- Year: year of the observation;- Species: tree species latin name. A station may have one or several tree species;<br>- Date SOS: date of start of season, formatted dd/mm/yyyy;<br>- Doy SOS: day of the year of the start of season;- Woy SOS: week of the year of the start of season;- Date EOS: date of end of season, formatted dd/mm/yyyy;<br>- Doy EOS: day of the year of the end of season;- Woy EOS: week of the year of the end of season; - Latitude;- Longitude;- Aspect: the 9 classes represent the standard 1 to 8 categorization, i.e. N, NE, E, SE, S, SW, W and NW, with -1 for flat areas;- Slope: in degrees;- Altitude: in meters<br>Note that the start of season and end of season here represent Biologische Bundesanstalt, Bundessortenamt und Chemische Industrie codes 11 and 94, respectively.
DOI: 10.5517/ccdc.csd.cc24wsb5
title: CCDC 1992907: Experimental Crystal Structure Determination

description: Related Article: David Z. Zee, T. David Harris|2020|Chemical Science|11|5447|doi:10.1039/D0SC01796E
DOI: 10.5517/ccdc.csd.cc24wsc6
title: CCDC 1992908: Experimental Crystal Structure Determination

description: Related Article: David Z. Zee, T. David Harris|2020|Chemical Science|11|5447|doi:10.1039/D0SC01796E
DOI: 10.5517/ccdc.csd.cc278c63
title: CCDC 2063614: Experimental Crystal Structure Determination

description: Related Article: Yoshiki Jinsenji, Kazuyoshi Takimoto, Jun Yoshida, Shigeki Mori, Yutaka Watanabe, Hisako Sato|2021|Dalton Trans.|50|8506|doi:10.1039/D1DT00783A
DOI: 10.5517/ccdc.csd.cc278c74
title: CCDC 2063615: Experimental Crystal Structure Determination

description: Related Article: Yoshiki Jinsenji, Kazuyoshi Takimoto, Jun Yoshida, Shigeki Mori, Yutaka Watanabe, Hisako Sato|2021|Dalton Trans.|50|8506|doi:10.1039/D1DT00783A
DOI: 10.5517/ccdc.csd.cc278c85
title: CCDC 2063616: Experimental Crystal Structure Determination

description: Related Article: Yoshiki Jinsenji, Kazuyoshi Takimoto, Jun Yoshida, Shigeki Mori, Yutaka Watanabe, Hisako Sato|2021|Dalton Trans.|50|8506|doi:10.1039/D1DT00783A
DOI: 10.5517/ccdc.csd.cc27fc35
title: CCDC 2068416: Experimental Crystal Structure Determination

description: Related Article: Rongxiang Chen, Ruo-Ling Jia, Wenbo Li, Wei Zhao, Kai-Kai Wang, Zhan-Yong Wang, Xueji Ma, Wei Dai, Aili Sun|2021|Org.Biomol.Chem.|19|5294|doi:10.1039/D1OB00715G
DOI: 10.25810/8pez-h060.17
title: Asian Newspaper Coverage of Climate Change or Global Warming, 2004-2021 - May 2021

description:         The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.21227/fja7-3728
title: High-quality amplification technology package for silicon transistor amplifier

description: The sound part is built into many products.It is used in a wide range of industries, including audio systems, home theaters, broadcast amplifier systems, TVs, computers, AI speakers, and game consoles.Even now, many companies are making efforts to improve the sound quality of the acoustic part.In the future, high sound quality will be required in many industrial fields.A wide range of industries will require high-quality technology. If you have high-quality sound technology,It is inefficient to monopolize in one particular enterprise.Many businesses should be able to freely use the technology.what do you think,Isn't it appropriate to use patented technology only for specific companies?and doubts may arise,Combining the audiophile high-quality technology with the proprietary technology or know-how possessed by the company makes it an exclusive product. In order to realize high sound quality, the performance of the electronic amplifier circuit is important.In order to enable the high-quality amplification technology possessed by Audiophile to be used in a wide range of industries,I will post this proposal so that sound-related companies can review it.
DOI: 10.25810/558f-c477.38
title: Australian Newspaper Coverage of Climate Change or Global Warming, 2000-2021 - May 2021

description:         The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.14043965
title: Phylogenomics with Hyb-Seq Unravels Korean Hosta Evolution

description: A total of 246 nuclear gene sequences and whole plastid genomes were captured from 55 accessions of Korean Hosta species using the Hyb-Seq method. The captured nuclear sequences were processed with the pipeline of HybPiper (v1.2). In short, the trimmed data were aligned onto the reference file with BWA aligner, and retrieved exon and intron sequences were assembled as contigs which were combined into a supercontig by SPAdes (v3.10.1) assembler. Each supercontig was aligned by MAFFT (v7.402). Because some of the bases exist in only a few samples, they were removed via Phyutility (v2.2.6) with -clean 0.7 option. Every clean supercontig file was concatenated according to sample ID. For chloroplast genome assembly, 55 constructed DNA libraries were sequenced on an Illumina platform (2 X 150 bp). Reconstruction of the chloroplast genome was performed in Geneious v. 2019.2.3 where the published Hosta chloroplast genome sequences were used as the reference.<br>The nuclear dataset includes a total of 246 genes (489,796 bp) from 55 Hosta species, while the chloroplast dataset contains 159,590 bp from 63 Hosta species and four outgroup taxa.<br>Three files (ASR_R_script.R, DNA_nr.csv, Hosta.tre) were used in ancestral state reconstruction of genome sizes in Korean Hosta species.