cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25288159.v1
title: Data, machine learning models weights, and results used for the analyses in the paper entitled "Predicting microbial community structure and temporal dynamics by using graph neural network models".

description: Abstract from the manuscript:<br>Modeling or even predicting the dynamics of complex microbial communities comprising thousands of individual species has been a long-standing challenge within microbial ecology. In biological wastewater treatment plants (WWTPs) an optimal microbial community composition is critical to effectively remove or recycle resources from human activities that would otherwise pollute the environment. Both the presence and abundance of process-critical microorganisms are important for the overall performance, and the relative abundance of the individual species can vary greatly over time without any recurring abundance dynamics. Being able to predict the future abundance dynamics can therefore be a great help for WWTP operators to prevent problems in time and optimize operation and performance. Here we used a graph neural network based model design that, for the first time, enables accurate prediction of the future abundance dynamics of the majority of bacteria in the microbial communities of activated sludge several months ahead. We trained and tested models on time series datasets from 24 different Danish full-scale WWTPs sampled 2-5 times a month over a period of 3-8 years totalling 4709 environmental samples. We were able to predict the dynamics 10 time points into the future (2-4 months) with high accuracy for most of the abundant bacteria, especially process-critical bacteria, and some even 20 time points ahead (up to 8 months). The approach was implemented as a workflow suitable for any longitudinal community dataset, and is not limited to the AS ecosystem alone.<br>
DOI: 10.5281/zenodo.13911939
title: Pylake tutorial dataset: Force calibration

description: A dataset acquired on a LUMICKS C-Trap used to demonstrate passive and active force calibration of an optical trap.

The dataset contains:

- A passive force calibration deep in the flowcell.

- An active calibration near the surface of the flowcell.

- A calibration on a fast detector.

- A calibration spectrum with a noise peak.

- A calibration with a noise floor.
DOI: 10.5281/zenodo.7729824
title: Pylake tutorial dataset: Force calibration

description: A dataset acquired on a LUMICKS C-Trap used to demonstrate passive and active force calibration of an optical trap. The dataset contains: - A passive force calibration deep in the flowcell. - An active calibration near the surface of the flowcell. - A calibration on a fast detector.
DOI: 10.5281/zenodo.8227632
title: Pylake tutorial dataset: Force calibration

description: A dataset acquired on a LUMICKS C-Trap used to demonstrate passive and active force calibration of an optical trap. The dataset contains: - A passive force calibration deep in the flowcell. - An active calibration near the surface of the flowcell. - A calibration on a fast detector. - A calibration spectrum with a noise peak.
DOI: 10.34740/kaggle/dsv/10560473
title: Mahanagar Yatayat Transport Dataset
DOI: 10.15468/dl.fhh4hm
title: Occurrence Download

description: A dataset containing 34007 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NCSM Non-molluscan Invertebrates Collection"
 ]
}

 The dataset includes 34007 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002824-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jzjj5
title: Occurrence Download

description: A dataset containing 1386 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (France, Italy, Spain, Portugal)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Alosa fallax (Lacepède, 1803)"
 ]
}

 The dataset includes 1386 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002826-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14726586
title: Pylake tutorial dataset: Force calibration

description: A dataset acquired on a LUMICKS C-Trap used to demonstrate passive and active force calibration of an optical trap.

The dataset contains:

- A passive force calibration deep in the flowcell.

- An active calibration near the surface of the flowcell.

- A calibration on a fast detector.

- A calibration spectrum with a noise peak.

- A calibration with a noise floor.

- A calibration item with the data inside the calibration marker.
DOI: 10.5281/zenodo.7729823
title: Pylake tutorial dataset: Force calibration

description: A dataset acquired on a LUMICKS C-Trap used to demonstrate passive and active force calibration of an optical trap.

The dataset contains:

- A passive force calibration deep in the flowcell.

- An active calibration near the surface of the flowcell.

- A calibration on a fast detector.

- A calibration spectrum with a noise peak.

- A calibration with a noise floor.

- A calibration item with the data inside the calibration marker.
DOI: 10.5281/zenodo.14726526
title: Drought Assessment data for Rajasthan using Remote Sensing

description: All the data used for the mauscript has been uploaded here. Readers may contact the corresponding author, if further information is needed.
DOI: 10.5281/zenodo.14726580
title: Metadata of Glucans, mannoproteins, antioxidant activities
DOI: 10.5281/zenodo.14726581
title: Metadata of Glucans, mannoproteins, antioxidant activities
DOI: 10.5281/zenodo.14726590
title: Cell-APP Datasets
DOI: 10.5281/zenodo.14726591
title: Cell-APP Datasets
DOI: 10.5281/zenodo.14726602
title: dataset volatile profile cricket hydrolisates

description: dataset of volatile profile of cricket based hydrolisates by Yarrowia lipolytica
DOI: 10.5281/zenodo.14726603
title: dataset volatile profile cricket hydrolisates

description: dataset of volatile profile of cricket based hydrolisates by Yarrowia lipolytica
DOI: 10.5281/zenodo.14726629
title: test

description: test
DOI: 10.5281/zenodo.14726630
title: test

description: test
DOI: 10.5281/zenodo.14726635
title: test

description: test
DOI: 10.5281/zenodo.14726636
title: test

description: test
DOI: 10.15468/dl.8fuzna
title: Occurrence Download

description: A dataset containing 1151 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lemur catta Linnaeus, 1758"
 ]
}

 The dataset includes 1151 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002827-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28264121
title: Raw data （ApoE Genotype-Specific Cognitive Benefits from Fasting-Induced Shifts in Energy Metabolic in Alzheimer’s disease）.xlsx

description: Our findings underscore the neuroprotective potential of TRF in AD, particularly for ApoE4 non-carriers, and highlight the promise of non-pharmacological nutritional interventions in preventing or delaying AD progression.
DOI: 10.6084/m9.figshare.28264121.v1
title: Raw data （ApoE Genotype-Specific Cognitive Benefits from Fasting-Induced Shifts in Energy Metabolic in Alzheimer’s disease）.xlsx

description: Our findings underscore the neuroprotective potential of TRF in AD, particularly for ApoE4 non-carriers, and highlight the promise of non-pharmacological nutritional interventions in preventing or delaying AD progression.
DOI: 10.5281/zenodo.14644299
title: Synthetic Electrochemical Impedance Spectra Generator

description: # Synthetic Electrochemical Impedance Spectra Generator

This Python script generates synthetic EIS spectra for predefined circuits using the `impedance.models.circuits.CustomCircuit` library. It simulates realistic experimental datasets for educational purposes, incorporating random file names, missing values, and empty files.

## Features- **Circuit Modeling**: Supports circuits like `R0-C0`, `R0-p(R1,C1)`, etc., with randomized parameters.- **Custom Frequency Range**: Logarithmic sweep from \(10^5\) to \(10^{-2}\) Hz.- **Realistic Data Challenges**:  - Random 3-line headers in files.  - Missing values in every other 100th file.  - Empty data in every 100th file.

## Output Format- **Columns**: `Freq_Hz`, `Re_Z_Ohm`, `-Im_Z_Ohm`, `|Z|_Ohm`, `Phase_deg`.- **File Naming**: Random 8-character alphanumeric strings.

Customize circuits, frequency range, and data patterns as needed.
DOI: 10.5281/zenodo.14644300
title: Synthetic Electrochemical Impedance Spectra Generator

description: # Synthetic Electrochemical Impedance Spectra Generator

This Python script generates synthetic EIS spectra for predefined circuits using the `impedance.models.circuits.CustomCircuit` library. It simulates realistic experimental datasets for educational purposes, incorporating random file names, missing values, and empty files.

## Features- **Circuit Modeling**: Supports circuits like `R0-C0`, `R0-p(R1,C1)`, etc., with randomized parameters.- **Custom Frequency Range**: Logarithmic sweep from \(10^5\) to \(10^{-2}\) Hz.- **Realistic Data Challenges**:  - Random 3-line headers in files.  - Missing values in every other 100th file.  - Empty data in every 100th file.

## Output Format- **Columns**: `Freq_Hz`, `Re_Z_Ohm`, `-Im_Z_Ohm`, `|Z|_Ohm`, `Phase_deg`.- **File Naming**: Random 8-character alphanumeric strings.

Customize circuits, frequency range, and data patterns as needed.
DOI: 10.5281/zenodo.14652183
title: Synthetic Electrochemical Impedance Spectra Generator

description: # Synthetic Electrochemical Impedance Spectra Generator

This Python script generates synthetic EIS spectra for predefined circuits using the `impedance.models.circuits.CustomCircuit` library. It simulates realistic experimental datasets for educational purposes, incorporating random file names, missing values, and empty files.

## Features- **Circuit Modeling**: Supports circuits like `R0-C0`, `R0-p(R1,C1)`, etc., with randomized parameters.- **Custom Frequency Range**: Logarithmic sweep from \(10^5\) to \(10^{-2}\) Hz.- **Realistic Data Challenges**:  - Random 3-line headers in files.  - Missing values in every other 100th file.  - Empty data in every 100th file.

## Output Format- **Columns**: `Freq_Hz`, `Re_Z_Ohm`, `-Im_Z_Ohm`, `|Z|_Ohm`, `Phase_deg`.- **File Naming**: Random 8-character alphanumeric strings.

Customize circuits, frequency range, and data patterns as needed.
DOI: 10.5281/zenodo.14726654
title: Synthetic Electrochemical Impedance Spectra Generator

description: # Synthetic Electrochemical Impedance Spectra Generator

This Python script generates synthetic EIS spectra for predefined circuits using the `impedance.models.circuits.CustomCircuit` library. It simulates realistic experimental datasets for educational purposes, incorporating random file names, missing values, and empty files.

## Features- **Circuit Modeling**: Supports circuits like `R0-C0`, `R0-p(R1,C1)`, etc., with randomized parameters.- **Custom Frequency Range**: Logarithmic sweep from \(10^5\) to \(10^{-2}\) Hz.- **Realistic Data Challenges**:  - Random 3-line headers in files.  - Missing values in every other 100th file.  - Empty data in every 100th file.

## Output Format- **Columns**: `Freq_Hz`, `Re_Z_Ohm`, `-Im_Z_Ohm`, `|Z|_Ohm`, `Phase_deg`.- **File Naming**: Random 8-character alphanumeric strings.

Customize circuits, frequency range, and data patterns as needed.
DOI: 10.4121/3bee7025-46ad-4038-b4f9-8a406b223bfd.v2
title: Port of Pantoloan Resilience Evaluation - Case Study Dataset

description: This dataset is part of Arry Destyanto’s dissertation “A Method for Evaluating Port Resilience in an Archipelago”, funded by Lembaga Pengelola Dana Pendidikan (LPDP). The study developed a method consisting of 4 analysis phases to evaluate a port’s resilience.<br>This dataset is used in the first case study, which applies the port resilience evaluation method in the Port of Pantoloan. The method was tested in the context of a commercial container port in Indonesia as an archipelago.<br>This dataset is in .zip format which when extracted consists of:Folder 1 - Dataset used for phase 1 (Island Connectivity Analysis)Folder 2 - Dataset used for phase 2 (Resilience Curve Analysis)Folder 3 - Dataset used for phase 3 (Disaster Impact Analysis)Dataset “Indonesia Vessels Capacity List 2018” from Ministry of Transportation.xlsx<br>The implementation of phase 4 used the analysis of official documents and mass articles listed in the dissertation.
DOI: 10.15468/dl.56cunb
title: Occurrence Download

description: A dataset containing 1680 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Biomphalaria pfeifferi (Krauss, 1848)"
 ]
}

 The dataset includes 1680 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002828-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14726578
title: Data from: Unveiling above- and below-ground ecological strategies that underlie woody plant encroachment in grasslands.

description: Data used in Jardim et al. (2025).

 

Jardim, R.I.L., Marques, M.C.M., Carmo, M.R.B., Cavalin, P.O., Oliveira, R.A.C., Carlucci, M.B. (2025). Unveiling above- and below-ground ecological strategies that underlie woody plant encroachment in grasslands. Journal of Ecology.
DOI: 10.5281/zenodo.14726579
title: Data from: Unveiling above- and below-ground ecological strategies that underlie woody plant encroachment in grasslands.

description: Data used in Jardim et al. (2025).

 

Jardim, R.I.L., Marques, M.C.M., Carmo, M.R.B., Cavalin, P.O., Oliveira, R.A.C., Carlucci, M.B. (2025). Unveiling above- and below-ground ecological strategies that underlie woody plant encroachment in grasslands. Journal of Ecology.
DOI: 10.5281/zenodo.14726706
title: test

description: test
DOI: 10.5281/zenodo.14726707
title: test

description: test
DOI: 10.5281/zenodo.14234231
title: Dataset for "Deciphering degassing mechanisms of He and H$_2$ at the sedimentary basin-basement interface by surface geophysics and gas geochemistry"

description: This repository hosts the data associated with "Deciphering degassing mechanisms of He and H$_2$ at the sedimentary basin-basement interface by surface geophysics and gas geochemistry", Leger et al.



The prefered electrical resistivity models are named ERT-L*.csv

The prefered P-wave velocity models are named Seismic-L*.csv

The SGS are in FullGaz.csv


For plotting the ERT data, use columns Lat,Long,ZZ and R

For plotting the Seismic data, use columns Lat, Long, ZZ and V

For plotting Gas data, use column X,Y and the species
DOI: 10.5281/zenodo.14234232
title: Dataset for "Deciphering degassing mechanisms of He and H$_2$ at the sedimentary basin-basement interface by surface geophysics and gas geochemistry"

description: This repository hosts the data associated with "Deciphering degassing mechanisms of He and H$_2$ at the sedimentary basin-basement interface by surface geophysics and gas geochemistry", Leger et al.



The prefered electrical resistivity models are named ERT-L*.csv

The prefered P-wave velocity models are named Seismic-L*.csv

The SGS are in FullGaz.csv


For plotting the ERT data, use columns Lat,Long,ZZ and R

For plotting the Seismic data, use columns Lat, Long, ZZ and V

For plotting Gas data, use column X,Y and the species
DOI: 10.6073/pasta/c9ee6279d033ecfceb0b4c498114b9e1
title: Hubbard Brook Experimental Forest: Weekly Snow and Frost Measurements, 1955 - present

description: Snow and frost measurements have been collected approximately weekly during the winter season at the Hubbard Brook Experimental Forest using transects underneath the forest canopy adjacent to the established network of standard rain gages from 1956 to the present. Maximum snow depth, snow water content, frost occurrence, and frost depth data are recorded at points along a transect known as a snow course, which includes 10 points spaced at 2-m intervals within a designated 0.25 ha area. Data from one course are averaged for each collection date. These data were gathered at the Hubbard Brook Experimental Forest in Woodstock, NH, which is operated and maintained by the USDA Forest Service, Northern Research Station.
DOI: 10.15468/dl.44q6e3
title: Occurrence Download

description: A dataset containing 201161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Juglans regia L."
 ]
}

 The dataset includes 201161 records from 1666 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002733-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bu23f3
title: Occurrence Download

description: A dataset containing 227537 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NMNH Material Samples (USNM)"
 ]
}

 The dataset includes 227537 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001297-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fzzhli
title: Occurrence Download

description: A dataset containing 46453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Hirundo rustica Linnaeus, 1758"
 ]
}

 The dataset includes 46453 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013691-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gg9d8u
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora pergrandis Holm-Niels. & Lawesson"
 ]
}

 The dataset includes 33 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0265582-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sg5z39
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Condea rivularis (Britton) Harley & J.F.B.Pastore"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153879-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tguy5k
title: Occurrence Download

description: A dataset containing 2578 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Geothlypis auricularis Salvin, 1883"
 ]
}

 The dataset includes 2578 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056823-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jje6c
title: Occurrence Download

description: A dataset containing 5431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Ceroxylon quindiuense (H.Karst.) H.Wendl."
 ]
}

 The dataset includes 5431 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220027-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzk3ob
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "TaxonKey is Amazilia castaneiventris (Gould, 1856)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 281 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023447-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24j76m
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalaria vestita Baker"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014010-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hm7ry
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Senecio pteridophyllus Franch."
 ]
}

 The dataset includes 75 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271554-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bz3s0u
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Acanthus eminens C.B.Clarke",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 27 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005755-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xgpzr
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epipactis ×pupplingensis K.P.Bell",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082061-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzxoyt
title: Occurrence Download

description: A dataset listing the 60 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-121.41099 39.43861,-119.83129 39.43861,-119.83129 41.95198,-121.41099 41.95198,-121.41099 39.43861))",
 "TaxonKey is Tenebrionidae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 60 records were derived from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013708-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4nfe3
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Annona glauca Schumach. & Thonn."
 ]
}

 The dataset includes 241 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012697-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.