cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18346514
title: Fluctuating environments cause context-dependent mate preferences in early population divergence

description: Attached you will find the R scripts and the accompanying data frames used to generate the results for this manuscript. Please refer to the attached README for instructions on how to use the scripts and data.

Fluctuating environments cause context-dependent mate preferences in early population divergence

Abstract

Understanding the factors shaping premating isolation in the early stages of population divergence is a major challenge in ecology and evolution. Context-dependent mate preferences that change with environmental conditions could either promote or counteract the development of premating isolation. Here, we investigated how environmental conditions and male origin affected female mate preferences in the colour polymorphic Common Bluetail Damselfly (Ischnura elegans). Closely located populations of this species differ in female colour morph frequencies, densities and species community composition, but there is extensive dispersal and gene flow between populations. We quantified female mate preferences for resident and immigrant males across years that differed in environmental harshness, revealed by interannual variation in female fecundity. Females showed highly context-dependent mate preferences: in a benign year, females preferred immigrant males, whereas in an extremely harsh year this pattern was reversed, and females instead preferred resident males. Furthermore, in the harsh year, field mating rates were low, and females were more prone to copulate in our experimental mate choice trials, indicating mate limitation and relaxed sexual conflict under harsh conditions. Female preferences for immigrant males in the benign year were unlikely due to inbreeding avoidance, as we found only weak population genomic structure and low fixation indices (FIS). Instead, female preferences for immigrant males when field mating rates are high is consistent with “chase away sexual selection”, whereby females develop resistance against mating harassment from local males. Unexpectedly, we found no differences in mate preferences between female colour morphs. Our study reveals that female mate preferences are highly context-dependent and shaped by environmental fluctuations, with implications for the development and stability of premating isolation.
DOI: 10.5281/zenodo.18347587
title: chr9_centromere_hifi_simulated_dataset

description: chr9_centromere_hifi_simulated_dataset
DOI: 10.5281/zenodo.18347586
title: chr9_centromere_hifi_simulated_dataset

description: chr9_centromere_hifi_simulated_dataset
DOI: 10.15468/dl.55kupc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
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 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006774-260120142942310/datasets/export for details.
DOI: 10.5281/zenodo.18347749
title: Data for: The Role of Phase and Spatial Modes in Wave-Induced Plasma Transport

description: This dataset contains numerical simulation results used to generate the transmissivity maps and transport analyses presented in the paper "The Role of Phase and Spatial Modes in Wave-Induced Plasma Transport".
DOI: 10.5281/zenodo.18347748
title: Data for: The Role of Phase and Spatial Modes in Wave-Induced Plasma Transport

description: This dataset contains numerical simulation results used to generate the transmissivity maps and transport analyses presented in the paper "The Role of Phase and Spatial Modes in Wave-Induced Plasma Transport".
DOI: 10.5878/002094
title: The National SOM Survey 2000
title: Den nationella SOM-undersökningen 2000
title: Riks-SOM 2000

description: National SOM 2000 is the fifteenth survey in this series. One of the questionnaires mainly deals with questions on politics, economy and working life, while the other mainly deals with media, culture and health. One third of the questions asked in the two questionnaires are common for both samples, for example questions about media habits, political attitudes, leisure activities, and social background.

Purpose:
The main purpose is to establish time series that enable researchers to analyse how various changes in society affect people's attitudes and behaviour.

The SOM Institute also has an online tool for data analysis, where you can work with data from the national SOM surveys directly in your web browser. You can find it at https://som-institutet.se/dataanalys
description: Detta är den femtonde undersökningen i serien Riks-SOM, en nationell frågeundersökning med syfte att kartlägga den svenska allmänhetens vanor och attityder på temat samhälle, opinioner och medier.

Riks-SOM 2000 genomfördes som två undersökningar med två representativa urval och två olika formulär, där datainsamlingarna genomfördes parallellt och under identiska förhållanden. Frågeformulären skiljer sig något åt i det att tyngdpunkten i det ena formuläret ligger på politik och samhälle, medan det andra har en tonvikt på frågor om medier, kultur och livsstil. Ett stort antal frågor är gemensamma för båda frågeformulären och kan därmed bearbetas med dubbel urvalsstorlek.

Båda formulären innehåller åtta olika frågeområden. Gemensamma frågeområden är: massmedier; politik och samhälle; fritid; samt bakgrundsfrågor. Politikformuläret innehåller även: Sveriges förhållande till omvärlden; invandrar- och flyktingfrågor; energi och miljö; samt medievanor. Medieformuläret tar också upp: radio, TV och journalistik; bibliotek; teknikinnehav och internet; samt medieattityder.

Syfte:
Huvudsyftet är att etablera tidsserier som gör det möjligt att analysera hur olika samhällsförändringar påverkar människors attityder och beteenden.

SOM-institutet har även ett onlineverktyg för dataanalys, där du kan arbeta med data från de nationella SOM-undersökningarna direkt i din webbläsare. Du hittar det på https://som-institutet.se/dataanalys
DOI: 10.5878/000374
title: The National SOM Survey 2000
title: Den nationella SOM-undersökningen 2000
title: Riks-SOM 2000

description: National SOM 2000 is the fifteenth survey in this series. One of the questionnaires mainly deals with questions on politics, economy and working life, while the other mainly deals with media, culture and health. One third of the questions asked in the two questionnaires are common for both samples, for example questions about media habits, political attitudes, leisure activities, and social background.

Purpose:
The main purpose is to establish time series that enable researchers to analyse how various changes in society affect people's attitudes and behaviour.

The SOM Institute also has an online tool for data analysis, where you can work with data from the national SOM surveys directly in your web browser. You can find it at https://som-institutet.se/dataanalys
description: Detta är den femtonde undersökningen i serien Riks-SOM, en nationell frågeundersökning med syfte att kartlägga den svenska allmänhetens vanor och attityder på temat samhälle, opinioner och medier.

Riks-SOM 2000 genomfördes som två undersökningar med två representativa urval och två olika formulär, där datainsamlingarna genomfördes parallellt och under identiska förhållanden. Frågeformulären skiljer sig något åt i det att tyngdpunkten i det ena formuläret ligger på politik och samhälle, medan det andra har en tonvikt på frågor om medier, kultur och livsstil. Ett stort antal frågor är gemensamma för båda frågeformulären och kan därmed bearbetas med dubbel urvalsstorlek.

Båda formulären innehåller åtta olika frågeområden. Gemensamma frågeområden är: massmedier; politik och samhälle; fritid; samt bakgrundsfrågor. Politikformuläret innehåller även: Sveriges förhållande till omvärlden; invandrar- och flyktingfrågor; energi och miljö; samt medievanor. Medieformuläret tar också upp: radio, TV och journalistik; bibliotek; teknikinnehav och internet; samt medieattityder.

Syfte:
Huvudsyftet är att etablera tidsserier som gör det möjligt att analysera hur olika samhällsförändringar påverkar människors attityder och beteenden.

SOM-institutet har även ett onlineverktyg för dataanalys, där du kan arbeta med data från de nationella SOM-undersökningarna direkt i din webbläsare. Du hittar det på https://som-institutet.se/dataanalys
DOI: 10.15468/dl.3ycvyw
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Czechia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nigella arvensis"
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006775-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxgg78
title: Occurrence Download

description: A dataset containing 970373 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Taraxacum",
 "HasCoordinate is true"
 ]
}

 The dataset includes 970373 records from 2871 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006644-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29203988
title: Ck_RH_Temp.csv

description: these data look at the viability of pollen after storage at various temps and RH of Cattleya kautskyana
DOI: 10.6084/m9.figshare.29203988.v1
title: Ck_RH_Temp.csv

description: these data look at the viability of pollen after storage at various temps and RH of Cattleya kautskyana
DOI: 10.15468/dl.zqy5gu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathytroctes microlepis Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-1.9734 4.2478,-0.0352 5.0957,-0.0352 10.8496,-9.0352 10.8496,-9.0352 4.4397,-8.4168 4.1049,-7.389 3.8664,-5.7288 4.5489,-4.0108 4.7359,-1.9734 4.2478))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010699-250525065834625/datasets/export for details.
DOI: 10.5061/dryad.68pt830
title: Data from: Rapid niche shifts in exotic species can be a million times faster than changes among native species and ten times faster than climate change

description: Aims: As global temperatures rise, the survival of many species may hinge
 on whether they can shift their climatic niches quickly enough to avoid
 extinction. Previous analyses among species and populations suggest that
 species’ niches change far slower than rates of projected climate change.
 However, it is unclear how quickly niches can change over the timeframe
 most relevant to global warming (decades instead of thousands or millions
 of years). Here, we use data from introduced species to assess how quickly
 climatic niches can change over decadal timescales. Location: Global
 Methods: We analyze climatic data from 76 reptile and amphibian species
 introduced into the U.S. We test for a relationship between species
 climatic-niche values in their native and introduced ranges. We also
 quantify niche shifts in introduced populations relative to their native
 ranges and the rate of change associated with these shifts. We then
 compare these rate estimates to those estimated among species and to
 projected rates of future climate change. Results: Remarkably, niche
 shifts in introduced species are roughly a million times faster than niche
 shifts among species in their native ranges, and roughly ten times faster
 than rates of projected climate change. Main conclusions: Our results
 demonstrate that dramatic and rapid niche shifts are possible, although
 these may be limited in species’ native ranges by biotic interactions and
 other factors.
description: Appendix
 S1Locality and climatic
 data for 76 species of reptiles and amphibians that have introduced
 populations in the United States of America.Appendix_S1.xlsAppendix_S2Summary of ranges of four climatic variables in native and introduced populations of 76 reptile and amphibian species that have introduced populations in the United States.Appendix_S3Testing the relationship between climatic values in native and introduced ranges.Appendix_S4Estimated rates of climatic niche shifts in specific introduced populations of reptiles and amphibians in the United StatesAppendix_S5Testing the robustness of niche-rate estimates in introduced speciesAppendix_S6Minimum and maximum values of four climatic variables (based on 10th and 90th percentiles) in the native and introduced ranges of 76 reptile and amphibian species.Apppendix S7Appendix S7. Tables 1 and 2.Appendix_S7.docAppendix_S8Estimating rates of niche change among speciesAppendix_S9Estimated rates of future climate change for all 1274 vertebrate species included in the study of Quintero and Wiens (2013), using six future climate projections for six climatic variables.Appendix S10Ecological niche modeling of 8 introduced species in their native rangesAppendix_S10.docx
DOI: 10.5061/dryad.dg5fd33
title: Data from: Grassland restoration characteristics influence phylogenetic and taxonomic structure of plant communities and suggest assembly mechanisms

description: 1. Phylogenetic and species-based taxonomic descriptions of community
 structure may provide complementary information about the mechanisms
 driving community assembly across different environments. Environmental
 filtering may have similar effects on taxonomic and phylogenetic diversity
 under the assumption of niche conservatism, whereas competitive exclusion
 could produce contrasting patterns in these diversity metrics. In
 grassland restorations, these diversity patterns might then reveal
 potential assembly mechanisms underlying the impacts of restoration and
 management conditions on community structure. 2. We compared plant
 community structure (alpha diversity, composition, and within-site beta
 diversity) from both phylogenetic and taxonomic perspectives. Using
 surveys from 120 tallgrass prairie restorations in four regions of the
 Midwestern United States, we examined the effects of four potential
 drivers or environmental gradients: precipitation in the first year of
 restoration, seed mix richness, time since last prescribed fire, and
 restoration age, and included soil conditions as a covariate. 3.
 First-year precipitation influenced taxonomic community structure, but had
 weak effects on phylogenetic diversity and composition. Similarly, greater
 seed mix richness increased taxonomic diversity but did not influence
 phylogenetic diversity. Taxonomic, but not phylogenetic, diversity
 generally was lower in older restorations and those with a longer time
 since the last prescribed fire. These drivers consistently explained more
 variation in taxonomic than phylogenetic diversity and composition,
 perhaps in part because species turnover was largely among related
 species, producing weak impacts on phylogenetic community measures. 4. An
 impact of precipitation on taxonomic but not phylogenetic diversity
 suggests that there may not be large differences in drought tolerance
 among clades that would cause phylogenetic patterns to arise from this
 environmental filter. Declining taxonomic diversity but not phylogenetic
 diversity is consistent with competitive exclusion as an assembly
 mechanism when competition is strongest between related species. 5.
 Synthesis: This research shows how studying taxonomic and phylogenetic
 diversity of ecosystem restorations can inform plant community ecology and
 help natural resource managers better predict the outcomes of restoration
 actions and management.
description: Quadrat_plant_community_dataPercent cover data of each plant species recorded in all quadrats from all four regional datasets.Site_environmental_data.csvEnvironmental characteristics of each site from all four regional datasets.
DOI: 10.5061/dryad.8fp561k
title: Data from: Assessing the vulnerability of Africa's freshwater fishes to climate change: a continent-wide trait-based analysis

description: Climate change is a key driver of biodiversity loss across the globe, and
 freshwater fishes are predicted to be among the most vulnerable taxa.
 African freshwater ecosystems are home to one of the most unique and
 diverse ichthyo-faunas on the planet, and freshwater fish species provide
 essential livelihoods for millions of people living in riparian
 communities across the continent. Although nearly one sixth of African
 freshwater fishes have been designated as endangered or vulnerable to
 extinction by the IUCN Red List assessment, the effects of climate change
 on these species have not been explored on a continent-wide scale. In this
 study, we present the first trait-based climate change vulnerability
 assessment (CCVA) comprising the majority (85%) of Africa's currently
 described freshwater fishes. We assembled data relating to three
 dimensions of vulnerability including sensitivity, adaptive capacity, and
 exposure. In addition, we developed an index of ‘conservation value’ based
 on traditional conservation metrics including extinction risk, endemism,
 and provision of ecosystem services. We found that almost 40% of African
 freshwater fishes are vulnerable to climate change, mostly owing to the
 many species with highly specialized habitat and life-history
 requirements, and because of the numerous anthropogenic stressors they
 face. High proportions of species within the Nothobranchiidae and
 Cichlidae families were found to be vulnerable. Regions with high
 frequencies of vulnerable species included the African rift valley lakes,
 the Congo River drainage, and the coastal rivers of West Africa. Several
 important data deficiencies were identified relating to species'
 population sizes, genetic variability, and life history traits, and
 constitute priority research areas for the future. In addition, we
 highlighted some cases where traditional conservation approaches overlook
 species and regions that are predicted to be threatened by climate change.
description: African fish
 species' traits related to climate change
 vulnerabilityCollation of available
 data on African freshwater fish species traits gleaned from publicly
 available repositories (IUCN Red List, FishBase) including data on life
 history traits, distributions, habitat use, dietary preferences, spawning
 behaviour, migratory behaviour, estimates of population size, and
 estimates of environmental tolerances, among others. Also includes data on
 threats experienced, human uses, and climate change projections across
 each species' range as predicted by the IPCC 5th assessment
 report.Nyboer et al. - 2019 - DATA -
 Assessing the vulnerabilty of Africa's freshwater fishes to climate
 change.xlsx
DOI: 10.5061/dryad.8pv1309
title: Data from: No evidence for local adaptation and an epigenetic underpinning in native and non-native ruderal plant species in Germany

description: 1. Many invasive species have rapidly adapted to different environments in
 their new ranges. This is surprising, as colonisation is usually
 associated with reduced genetic variation. Heritable phenotypic variation
 with an epigenetic basis may explain this paradox. 2. Here, we assessed
 the contribution of DNA methylation to local adaptation in native and
 naturalized non-native ruderal plant species in Germany. We reciprocally
 transplanted offspring from natural populations of seven native and five
 non-native plant species between the Konstanz region in the south and the
 Potsdam region in the north of Germany. Before the transplant, half of the
 seeds were treated with the demethylation agent zebularine. We recorded
 survival, flowering probability and biomass production as fitness
 estimates. 3. Contrary to our expectations, we found little evidence for
 local adaptation, both among the native and among the non-native plant
 species. Zebularine treatment had mostly negative effects on overall plant
 performance, regardless of whether plants were local or not, and
 regardless of whether they were native or non-native. 4. Synthesis. We
 conclude that local adaptation, at least at the scale of our study, plays
 no major role in the success of non-native and native ruderal plants.
 Consequently, we found no evidence yet for an epigenetic basis of local
 adaptation.
description: No evidence for local
 adaptation and an epigenetic underpinning in native and non-native ruderal
 plant species in GermanyData_main.txt contains
 untransformed data for our experimental plants. SoilData.txt contains
 supplemental data on edaphic conditions at our field sites. Variables
 explained in info.txt files.HerdenEckertStiftJoshivanKleunen_Data.zip