cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4qg7vc
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pleuronichthys ritteri Starks & Morris, 1907",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 123 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042367-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/342kbcrgnd
title: Novel Hemizygous IL2RG variants Impair IL-2 induced STAT5 phosphorylation and transcriptional activity Causing X-Linked Combined Immunodeficiency

description: Novel Hemizygous IL2RG variants Impair IL-2 induced STAT5 phosphorylation and transcriptional activity Causing X-Linked Combined Immunodeficiency
DOI: 10.17632/342kbcrgnd.1
title: Novel Hemizygous IL2RG variants Impair IL-2 induced STAT5 phosphorylation and transcriptional activity Causing X-Linked Combined Immunodeficiency

description: Novel Hemizygous IL2RG variants Impair IL-2 induced STAT5 phosphorylation and transcriptional activity Causing X-Linked Combined Immunodeficiency
DOI: 10.17632/mr8rr8kr2c.1
title: Determining the nutritional importance of common mycelial networks in a desert truffle mycorrhizal symbiosis for soil nitrogen redistribution

description: The research conducted by Andrino et al. focuses on the role of common mycorrhizal networks (CMNs) in nitrogen redistribution among plants, particularly in semi-arid ecosystems. Below is a detailed breakdown of the research hypothesis, findings, and interpretations:

Research Hypothesis
- The primary hypothesis of the study posits that common mycorrhizal networks (CMNs) play a significant role in redistributing nitrogen (N) from nutrient-rich sites to those that are poor, thereby supporting plant establishment and survival, especially in environments characterized by heterogeneously distributed nutrients.
- The study specifically examines whether seedling age or size influences the effectiveness of N redistribution through CMNs, predicting that younger plants would disproportionately benefit from these networks due to higher relative growth rates.

### Data Findings
- The research utilized 15N tracer experiments to track nitrogen movement between organic compartments, providing evidence for N translocation from labeled compartments with adult plants to sink compartments.
- Notable results included:
 - Higher 15N enrichment levels in adult plants (0.8%) compared to seedlings (0.05%).
 - In seedling compartments, up to nearly 15% of the applied 15N was detected in seedling tissues, whereas adult plants in other experiments showed significant uptake but a lower percentage contribution to total nitrogen.
 - It was determined that the 15N contribution to the total nitrogen content of seedlings was significantly higher than that of adult plants over the course of the experiments, illustrating the critical role of CMNs in supporting younger plants.

Data Interpretation
- Nutrient Demand: The findings indicate that seedlings, having a higher nitrogen requirement for growth, are effectively supported through CMNs that mitigate competition for nitrogen resources with adult plants.
- Mycorrhizal Functionality: The continuous increase in 15N tracer uptake suggests that CMNs not only redistribute nitrogen but do so more effectively during the early stages of plant growth when the seedlings most need it.
- The ability of CMNs to enhance nutrient uptake particularly under low nitrogen conditions emphasizes their essential role in maintaining plant biodiversity and ecosystem health, especially as aridity increase. This mechanism is crucial in semi-arid ecosystems, where environmental degradation threatens mycorrhizal diversity.
- The increase in N in the shoots compared to roots highlights an important strategy where nutrient allocation favors vegetative growth, which is essential for the establishment of seedlings in challenging environments.
These insights greatly contribute to the understanding of plant interactions within ecosystems, indicating that CMNs facilitate cooperation rather than competition among plants, enhancing ecological stability.
DOI: 10.17632/t78f4pxz42.1
title: Urdaibai Forest Ecosystem Services and Forest Attributes Data

description: Data used for the results showed in the article "Effect of forest management on the multifunctionality and ecosystem services supply in a Biosphere Reserve". The data shows the values of Ecosystem serbices and forest attributes of each stand used for the analysis.
DOI: 10.17632/54rfb5v4mc.1
title: 50 years of rural labor productivity: A systematic review of economic literature (data and graphs)

description: This study presents a systematic review of the economic literature on rural labor productivity over the past fifty years, utilizing bibliometric and network analysis to identify prevailing themes and research patterns. Drawing from 207 scientific articles indexed in the Scopus database, our analysis reveals five primary research themes: [1] Economic structure, policy, and labor dynamics; [2] Social, cultural, and human capital factors; [3] Land use and agricultural practices; [4] Infrastructure, urbanization, and economic growth; and [5] Environmental sustainability and technological support. The findings underscore the field’s relevance in addressing ongoing rural-urban disparities, gender and social equity issues, and sustainable development challenges.
DOI: 10.17632/75nvstkb3m.1
title: Ouagadougou LST-R by greening

description: This dataset contains four tables of information on the municipality of Ouagadougou, Burkina Faso. The average daytime and nighttime land surface temperatures (LST) as captured by ECOSTRESS in the 55 sectors during the heat peak of April-May 2023, 3 classes of land cover, and 8 classes of land use are gathered in Table A1. The area (ha) planted along roads over 18 m wide, along the edges of utilities, and in vacant lands beyond the built-up area in 2023 is estimated in Table B1. The area to be planted according to three scenarios is presented in Table B2. The area to be planted per capita and district according to 3 scenarios is in Table B3.
DOI: 10.5281/zenodo.14408831
title: Dataset Deliverable 4.1. Carbon Farming Mitigation Potential:  Evaluating the mitigation potential  (and uncertainties) of carbon farming  practices

description: Deliverable 4.1, identifies and evaluates the mitigation potential and uncertainties of carbon farming (CF) practices across five key agricultural systems: woody crops, peatlands, arable lands, grasslands and agroforestry. Its goal is to assess these systems' capacities for carbon sequestration, reduction of greenhouse gas (GHG) emissions, and broader environmental benefits. This work aligns with the aim of MARVIC to develop context-specific, harmonised Monitoring, Reporting, and Verification (MRV) systems for CF, supporting EU Mission Soil objectives and the Carbon Removal and Carbon Farming Certification Regulation Framework (CRCF). 

This document is intended for policymakers, researchers and agricultural stakeholders involved in carbon farming and land-use planning at regional, national, and European levels. Its relevance extends to environmental agencies, agricultural cooperatives, and research institutions focusing on climate change mitigation and sustainable agriculture.
DOI: 10.17632/pzp9k4j4yy.1
title: Data of Nurses/Midwives' Personality Traits and Work Experience in Patient Safety

description: This study aimed to address the following research questions:
1. Do the safety attitudes of nurses and midwives correlate with any or all of the following personality traits: Extraversion, Agreeableness, Conscientiousness, Neuroticism, and Openness?
2. Are the safety attitudes of nurses and midwives influenced by their length of work experience, work setting, or attended undergraduate programs?
3. Is there a relationship between the personality traits and safety attitudes of student nurses/midwives and nurses/midwives?

The study utilized a questionnaire divided into three sections: Demographic Information, Personality Traits, and Safety Attitudes. 
Different demographic questions were given to postgraduate nurses/midwives and undergraduate student nurses/midwives. The Personality Traits section included 44 questions covering Extraversion (8 questions), Agreeableness (9 questions), Conscientiousness (9 questions), Neuroticism (8 questions), and Openness (10 questions). The Safety Attitudes section comprised 34 questions categorized into four sub-groups: Understanding of job roles, Teamwork in Emergencies, Overall Importance of Effective Teamwork and Communication, and the Importance of Clear Communication within the Nursing/Midwifery Team. Both personality traits and safety attitudes were assessed using a 5-point Likert scale (1: Disagree Strongly, 2: Disagree a Little, 3: Neither Agree nor Disagree, 4: Agree a Little, 5: Agree Strongly).
DOI: 10.17632/v56r9s8ws5.1
title: Supplementary for the paper " Minimized compact automaton for clumps over degenerate patterns"

description: The data contains information about proposed automata sizes for several types of degenerate patterns; and the results of computer experiments showing accuracy of proposed algorithm for P-value computation.
DOI: 10.17632/3ch4spjj3v.1
title: Dataset Exploring the Impact of School Policies, Literacy Programs, and Instructional Literacy on School Literacy Climate: Utilizing Structural Equation Modeling Analysis

description: This data is based on the measurements of the variables of school policy, literacy program, instructional literacy, and school literacy climate. Through this study, we try to prove that there is a strong simultaneous influence between school policy, literacy programs, and instructional literacy on realizing the school literacy climate. Padang City in West Sumatra Province is the research location because it is an area classified as a successful implementation of the School Literacy Movement. 149 school principals were involved in filling out questionnaires distributed offline
DOI: 10.17632/3ch4spjj3v.2
title: Dataset Exploring the Effect of School Policy, Literacy Programs, and Literacy Instruction on School Literacy Culture

description: This data is based on the measurements of the variables of school policy, literacy program, instructional literacy, and school literacy climate. Through this study, we try to prove that there is a strong simultaneous influence between school policy, literacy programs, and instructional literacy on realizing the school literacy climate. Padang City in West Sumatra Province is the research location because it is an area classified as a successful implementation of the School Literacy Movement. 149 school principals were involved in filling out questionnaires distributed offline
DOI: 10.15468/dl.srw9sp
title: Occurrence Download

description: A dataset containing 211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pleuronichthys verticalis Jordan & Gilbert, 1880",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 211 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042368-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/vnmhtktn8d.1
title: Does a greater hamstring muscle thickness mean a greater ap-oneurosis thickness?

description: This data is related to the article entitled "Does a greater hamstring muscle thickness mean a greater ap-oneurosis thickness?"
DOI: 10.15468/dl.jxmdj5
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Podothecus accipenserinus (Tilesius, 1813)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 62 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042369-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjzfer
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Didemnum vexillum Kott, 2002",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 249 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042370-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v57sya
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Uegitglanis zammaranoi Gianferrari, 1923"
 ]
}

 The dataset includes 26 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042371-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/mnh5hhg7r2.1
title: A coal maceral dataset with corresponding labels

description: This is a coal maceral dataset including maceral group images (vitrinite, inertinite, liptinite) and corresponding annotated images. The images are collected from the USGS and fifteen mining areas of China and the labels are annotated through the Neoimaging app. There are 697 coal maceral images and 319 labeled images in the dataset. These images have been improved the quality and resolution using MejorarImagen software. Among the labeled images, red is used for vitrinite, yellow for inertinite, and blue for liptinite. The petrographic analyses for coal samples from coal maceral dataset are included in vitrinite reflectance.xlsx.
DOI: 10.5281/zenodo.14532306
title: Locus- and Tissue-Specific CHH Methylation through RNA-Directed DNA Methylation during Female gametophyte development in Rice

description: This repository provides storage for the Source Data associated with the preprint available at https://doi.org/10.1101/2024.12.03.626448. The DOI will be updated once the manuscript is formally published.
DOI: 10.5281/zenodo.14532307
title: Locus- and Tissue-Specific CHH Methylation through RNA-Directed DNA Methylation during Female gametophyte development in Rice

description: This repository provides storage for the Source Data associated with the preprint available at https://doi.org/10.1101/2024.12.03.626448. The DOI will be updated once the manuscript is formally published.
DOI: 10.15468/dl.tpunc5
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poecilopsetta beanii (Goode, 1881)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 102 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042373-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10822869
title: Multi-omics for Understanding Climate Change (MUCC) database v2.0.0

description: This is the Multi-omics for Understanding Climate Change (MUCC database) version 2.0.0. This current version is based on amplicon and metagenomic sequencing of Old Woman Creek (OWC), Prairie Pothole Region(PPR7 and PPR8), Jean Lafitte National Historical Park and Preserve (JLA), AmeriFlux site US-LA2 (LA2), Stordalen Mire (STM-fen and STM-bog), AmeriFlux site-ID US-Twt (TWI), and Peatland Responses Under Changing Environments (SPRUCE) and wetland soils. Additionally, this includes metatranscriptome sequencing from OWC. In the future, this will be expanded to include more data from these sites and from additional wetlands.

OWC, PPR, JLA and LA2 data are deposited in NCBI Bioproject PRJNA1007388

Stordalen Mire MAGs are deposited in BioProject PRJNA386538

AmeriFlux site-ID US-Twt are deposited in SRA SRP003022, SRA SRP010671, SRP010730, SRP010738, SRP010741, SRP010747, SRP010748, SRP010751, SRP010862, SRP010870, and SRP011309. 

SPRUCE data are deposited in PRJNA638786 and PRJNA638601

 

Files and datasets included here: 



16S.zip 16S amplicon sequencing data and site metadata for 1,112 samples (fastq files)

MQ_HQ_MAGs.zip Database of 4745 Medium and High Quality MAGs (fast files)

MUCC_v2.0.0_HQMQ_genes.faa.zip MAG amino acid gene sequences derived from DRAM gene calls (fasta file)

MUCC_v2.0.0_HQMQ_annotations.tsv MAG DRAM ANNOTATIONS

owc_metat_table_methanoregula_genes.csv Metatranscriptomic expression per genes in Methanoregula across 133 metatranscriptomes (csv table)

gtdbtk.ar53.decorated.tree newick file for GTDB de novo work flow Methanoregula MAG tree

Newick_gene_trees.zip Trees used in blast identification of methylotrophic gene homologs to curate MR for methylotrophy

fasta_reference_genes.zip FASTA reference files of genes used as BLAST query to mine Methanoregula MAGs for genes involved in detoxification of reactive oxygen species (ROS) and methanogenic metabolism of methylated compounds
DOI: 10.5281/zenodo.10822868
title: Multi-omics for Understanding Climate Change (MUCC) database v2.0.0

description: This is the Multi-omics for Understanding Climate Change (MUCC database) version 2.0.0. This current version is based on amplicon and metagenomic sequencing of Old Woman Creek (OWC), Prairie Pothole Region(PPR7 and PPR8), Jean Lafitte National Historical Park and Preserve (JLA), AmeriFlux site US-LA2 (LA2), Stordalen Mire (STM-fen and STM-bog), AmeriFlux site-ID US-Twt (TWI), and Peatland Responses Under Changing Environments (SPRUCE) and wetland soils. Additionally, this includes metatranscriptome sequencing from OWC. In the future, this will be expanded to include more data from these sites and from additional wetlands.

OWC, PPR, JLA and LA2 data are deposited in NCBI Bioproject PRJNA1007388

Stordalen Mire MAGs are deposited in BioProject PRJNA386538

AmeriFlux site-ID US-Twt are deposited in SRA SRP003022, SRA SRP010671, SRP010730, SRP010738, SRP010741, SRP010747, SRP010748, SRP010751, SRP010862, SRP010870, and SRP011309. 

SPRUCE data are deposited in PRJNA638786 and PRJNA638601

 

Files and datasets included here: 



16S.zip 16S amplicon sequencing data and site metadata for 1,112 samples (fastq files)

MQ_HQ_MAGs.zip Database of 4745 Medium and High Quality MAGs (fasta files)

MUCC_v2.0.0_HQMQ_genes.faa.zip MAG amino acid gene sequences derived from DRAM gene calls (fasta file)

MUCC_v2.0.0_HQMQ_annotations.tsv MAG DRAM ANNOTATIONS

owc_metat_table_methanoregula_genes.csv Metatranscriptomic expression per genes in Methanoregula across 133 metatranscriptomes (csv table)

gtdbtk.ar53.decorated.tree newick file for GTDB de novo work flow Methanoregula MAG tree

Newick_gene_trees.zip Trees used in blast identification of methylotrophic gene homologs to curate MR for methylotrophy

fasta_reference_genes.zip FASTA reference files of genes used as BLAST query to mine Methanoregula MAGs for genes involved in detoxification of reactive oxygen species (ROS) and methanogenic metabolism of methylated compounds

protpipeliner.py Python script is a modification of protpipeliner.rb for building RAXML trees

classification_w_outgroup.txt Taxonomy and corresponding MAG ID for Methanregula used in the tree (Figure 5B)

Methanoregula_metabolism_summary.xlsx The DRAM annotations of the Methanoregula MAGs from MUCC, GTDB, and JGI

Methanoregula_physiology.txt Curation of Methanoregula MAGS for physliogical functions of interest

Methanoregula_MAGs_list.txt Comprehensive list of all Methanoregula MAGs used and what database they were sourced from

Methanoregula_MAGs_DB.zip Database of 108 Methanregula MAGs
DOI: 10.5281/zenodo.13909730
title: Multi-omics for Understanding Climate Change (MUCC) database v2.0.0

description: This is the Multi-omics for Understanding Climate Change (MUCC database) version 2.0.0. This current version is based on amplicon and metagenomic sequencing of Old Woman Creek (OWC), Prairie Pothole Region(PPR7 and PPR8), Jean Lafitte National Historical Park and Preserve (JLA), AmeriFlux site US-LA2 (LA2), Stordalen Mire (STM-fen and STM-bog), AmeriFlux site-ID US-Twt (TWI), and Peatland Responses Under Changing Environments (SPRUCE) and wetland soils. Additionally, this includes metatranscriptome sequencing from OWC. In the future, this will be expanded to include more data from these sites and from additional wetlands.

OWC, PPR, JLA and LA2 data are deposited in NCBI Bioproject PRJNA1007388

Stordalen Mire MAGs are deposited in BioProject PRJNA386538

AmeriFlux site-ID US-Twt are deposited in SRA SRP003022, SRA SRP010671, SRP010730, SRP010738, SRP010741, SRP010747, SRP010748, SRP010751, SRP010862, SRP010870, and SRP011309. 

SPRUCE data are deposited in PRJNA638786 and PRJNA638601

 

Files and datasets included here: 



16S.zip 16S amplicon sequencing data and site metadata for 1,112 samples (fastq files)

MQ_HQ_MAGs.zip Database of 4745 Medium and High Quality MAGs (fast files)

MUCC_v2.0.0_HQMQ_genes.faa.zip MAG amino acid gene sequences derived from DRAM gene calls (fasta file)

MUCC_v2.0.0_HQMQ_annotations.tsv MAG DRAM ANNOTATIONS

owc_metat_table_methanoregula_genes.csv Metatranscriptomic expression per genes in Methanoregula across 133 metatranscriptomes (csv table)

gtdbtk.ar53.decorated.tree newick file for GTDB de novo work flow Methanoregula MAG tree

Newick_gene_trees.zip Trees used in blast identification of methylotrophic gene homologs to curate MR for methylotrophy

fasta_reference_genes.zip FASTA reference files of genes used as BLAST query to mine Methanoregula MAGs for genes involved in detoxification of reactive oxygen species (ROS) and methanogenic metabolism of methylated compounds

protpipeliner.py Python script is a modification of protpipeliner.rb for building RAXML trees