cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13265970.v1
title: Additional file 1 of New viral biogeochemical roles revealed through metagenomic analysis of Lake Baikal

description: Table S1. Detailed description of all the analysed Baikal scaffolds. Fields include Completeness inferred by VirSorter. For each taxonomic level from domain to species: taxon name, number of CRISPR hits, number of homology matches hits, number of shared tRNA hits. Scaffold length. For each taxonomic level from domain to species: closest relative (CR) average amino acid identity (AAI), number of matched protein encoding genes (PEGs), percentage of matched PEGs relative to the total number of PEGs identified in the scaffold, and CR taxon name. MD5: MD5 checksum of scaffold sequence. Number of identified protein encoding genes. True_Virus: indicating if the scaffold was classified as a bona fide virus sequence. VP: Viral population to which scaffold was assigned. VirFinder score and p-value, VirSorter category, percentage of scaffold PEGs matched to pVOGs database, total number of hits to pVOGs database and added viral quotient (AVQ) of these hits. (XLS 61331 kb)
DOI: 10.6084/m9.figshare.13265994
title: Additional file 6 of Development of a 3D functional assay and identification of biomarkers, predictive for response of high-grade serous ovarian cancer (HGSOC) patients to poly-ADP ribose polymerase inhibitors (PARPis): targeted therapy

description: Additional file 6. Genes, differentially expressed between Sensitive (S) and resistant (R) AsPCs (≥ 1.5 fold, p ≤ 0.05). Table presenting the subset of differentially expressed genes that were selected by initial filtering on confidence at p-value ≤ 0.05, followed by filtering of expression level (≥ 1.5 fold). Using these selection criteria, the table lists 240 upregulated genes and 583 downregulated genes in the PARPis-sensitive AsPCs, as compared to the PARPis-resistant AsPCs.
DOI: 10.6084/m9.figshare.13265994.v1
title: Additional file 6 of Development of a 3D functional assay and identification of biomarkers, predictive for response of high-grade serous ovarian cancer (HGSOC) patients to poly-ADP ribose polymerase inhibitors (PARPis): targeted therapy

description: Additional file 6. Genes, differentially expressed between Sensitive (S) and resistant (R) AsPCs (≥ 1.5 fold, p ≤ 0.05). Table presenting the subset of differentially expressed genes that were selected by initial filtering on confidence at p-value ≤ 0.05, followed by filtering of expression level (≥ 1.5 fold). Using these selection criteria, the table lists 240 upregulated genes and 583 downregulated genes in the PARPis-sensitive AsPCs, as compared to the PARPis-resistant AsPCs.
DOI: 10.6084/m9.figshare.13266021
title: Additional file 3 of High-fat diet-induced and genetically inherited obesity differentially alters DNA methylation profile in the germline of adult male rats

description: Additional file 3: Detailed information on WNIN/Ob group compared to LEAN group.
DOI: 10.6084/m9.figshare.13266021.v1
title: Additional file 3 of High-fat diet-induced and genetically inherited obesity differentially alters DNA methylation profile in the germline of adult male rats

description: Additional file 3: Detailed information on WNIN/Ob group compared to LEAN group.
DOI: 10.6084/m9.figshare.13266015
title: Additional file 1 of High-fat diet-induced and genetically inherited obesity differentially alters DNA methylation profile in the germline of adult male rats

description: Additional file 1: Detailed information on HFD group compared to CD group.
DOI: 10.6084/m9.figshare.13266015.v1
title: Additional file 1 of High-fat diet-induced and genetically inherited obesity differentially alters DNA methylation profile in the germline of adult male rats

description: Additional file 1: Detailed information on HFD group compared to CD group.
DOI: 10.6084/m9.figshare.13266018
title: Additional file 2 of High-fat diet-induced and genetically inherited obesity differentially alters DNA methylation profile in the germline of adult male rats

description: Additional file 2: Detailed information on WNIN/Ob group compared to CROb group.
DOI: 10.6084/m9.figshare.13266018.v1
title: Additional file 2 of High-fat diet-induced and genetically inherited obesity differentially alters DNA methylation profile in the germline of adult male rats

description: Additional file 2: Detailed information on WNIN/Ob group compared to CROb group.
DOI: 10.6084/m9.figshare.13266024.v1
title: Additional file 4 of High-fat diet-induced and genetically inherited obesity differentially alters DNA methylation profile in the germline of adult male rats

description: Additional file 4: Detailed information on CROb group compared to LEAN group.
DOI: 10.6084/m9.figshare.12771266.v1
title: Human_Subjects_Audio_ID_15.zip

description: All recordings and source files for the measurements with this participant. For details, please see the "Methods" section of the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.6084/m9.figshare.13266024
title: Additional file 4 of High-fat diet-induced and genetically inherited obesity differentially alters DNA methylation profile in the germline of adult male rats

description: Additional file 4: Detailed information on CROb group compared to LEAN group.
DOI: 10.6084/m9.figshare.12771266
title: Human_Subjects_Audio_ID_15.zip

description: All recordings and source files for the measurements with this participant. For details, please see the "Methods" section of the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.6084/m9.figshare.11979285.v1
title: Additional file 1 of The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae

description: Additional file 1. Supplementary_Table_S1_Plant_Material.
DOI: 10.6084/m9.figshare.12771302.v1
title: Human_Subjects_Audio_ID_14.zip

description: All recordings and source files for the measurements with this participant. For details, please see the "Methods" section of the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.6084/m9.figshare.12771302
title: Human_Subjects_Audio_ID_14.zip

description: All recordings and source files for the measurements with this participant. For details, please see the "Methods" section of the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.6084/m9.figshare.12771305.v1
title: Human_Subjects_Audio_ID_13.zip

description: All recordings and source files for the measurements with this participant. For details, please see the "Methods" section of the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.6084/m9.figshare.12771305
title: Human_Subjects_Audio_ID_13.zip

description: All recordings and source files for the measurements with this participant. For details, please see the "Methods" section of the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.6084/m9.figshare.13266147
title: Additional file 2 of Global prevalence of congenital heart disease in school-age children: a meta-analysis and systematic review

description: Additional file 2. List of included studies and extracted original data for meta-analyses.
DOI: 10.6084/m9.figshare.13266147.v1
title: Additional file 2 of Global prevalence of congenital heart disease in school-age children: a meta-analysis and systematic review

description: Additional file 2. List of included studies and extracted original data for meta-analyses.
DOI: 10.6084/m9.figshare.13266161
title: Additional file 4 of Support practices by an interdisciplinary team in a palliative-care unit for relatives of patients in agonal phase

description: Additional file 4. Coreq Check list.
DOI: 10.6084/m9.figshare.13266161.v1
title: Additional file 4 of Support practices by an interdisciplinary team in a palliative-care unit for relatives of patients in agonal phase

description: Additional file 4. Coreq Check list.
DOI: 10.6084/m9.figshare.13266176.v1
title: Additional file 1 of Construction of anti-codon table of the plant kingdom and evolution of tRNA selenocysteine (tRNASec)

description: Additional file 1: Supplementary File 1. Percentage frequency of anti-codons of the plant kingdom.
DOI: 10.6084/m9.figshare.13266176
title: Additional file 1 of Construction of anti-codon table of the plant kingdom and evolution of tRNA selenocysteine (tRNASec)

description: Additional file 1: Supplementary File 1. Percentage frequency of anti-codons of the plant kingdom.
DOI: 10.6084/m9.figshare.12771335.v1
title: Human_Subjects_Audio_ID_12.zip

description: All recordings and source files for the measurements with this participant. For details, please see the "Methods" section of the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.6084/m9.figshare.12771335
title: Human_Subjects_Audio_ID_12.zip

description: All recordings and source files for the measurements with this participant. For details, please see the "Methods" section of the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.6084/m9.figshare.13266219.v1
title: Additional file 5 of Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms

description: Additional file 5: Tables S2-S11. Significant associations at antimicrobial resistance class and antimicrobial resistance genes level (p &lt; 0.05) across production systems and sample types.
DOI: 10.6084/m9.figshare.13266219
title: Additional file 5 of Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms

description: Additional file 5: Tables S2-S11. Significant associations at antimicrobial resistance class and antimicrobial resistance genes level (p &lt; 0.05) across production systems and sample types.
DOI: 10.6084/m9.figshare.13266204
title: Additional file 14 of Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms

description: Additional file 14: Table S30. Manually curated "phenotypes.txt" from the ResFinder repository.
DOI: 10.6084/m9.figshare.13266204.v1
title: Additional file 14 of Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms

description: Additional file 14: Table S30. Manually curated "phenotypes.txt" from the ResFinder repository.
DOI: 10.6084/m9.figshare.13266189
title: Additional file 10 of Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms

description: Additional file 10: Tables S27-S28. Summary of integrons and lateral gene transfer events detected on contigs with more than 1,500bp.
DOI: 10.6084/m9.figshare.13266189.v1
title: Additional file 10 of Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms

description: Additional file 10: Tables S27-S28. Summary of integrons and lateral gene transfer events detected on contigs with more than 1,500bp.
DOI: 10.6084/m9.figshare.13266231
title: Additional file 9 of Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms

description: Additional file 9: Tables S12-S26. Significant associations at antimicrobial resistance class and antimicrobial resistance genes (ARGs) level (p &lt; 0.05) across production systems and sample types in taxonomically assigned ARGs.
DOI: 10.6084/m9.figshare.13266231.v1
title: Additional file 9 of Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms

description: Additional file 9: Tables S12-S26. Significant associations at antimicrobial resistance class and antimicrobial resistance genes (ARGs) level (p &lt; 0.05) across production systems and sample types in taxonomically assigned ARGs.
DOI: 10.6084/m9.figshare.12771362
title: Human_Subjects_Audio_ID_11.zip

description: All recordings and source files for the measurements with this participant. For details, please see the "Methods" section of the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.6084/m9.figshare.12771362.v1
title: Human_Subjects_Audio_ID_11.zip

description: All recordings and source files for the measurements with this participant. For details, please see the "Methods" section of the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.6084/m9.figshare.13265889
title: Additional file 3 of Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice

description: Additional file 3. Gene ontologies and differential gene expression analysis results associated with the genes in cluster 2 identified from k-means clustering of differentially expressed genes.
DOI: 10.6084/m9.figshare.13265889.v1
title: Additional file 3 of Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice

description: Additional file 3. Gene ontologies and differential gene expression analysis results associated with the genes in cluster 2 identified from k-means clustering of differentially expressed genes.
DOI: 10.6084/m9.figshare.13265892
title: Additional file 4 of Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice

description: Additional file 4. Gene ontologies and differential gene expression analysis results associated with the genes in cluster 3 identified from k-means clustering of differentially expressed genes.
DOI: 10.6084/m9.figshare.13265892.v1
title: Additional file 4 of Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice

description: Additional file 4. Gene ontologies and differential gene expression analysis results associated with the genes in cluster 3 identified from k-means clustering of differentially expressed genes.
DOI: 10.6084/m9.figshare.12771476.v1
title: Human_Subjects_Audio_ID_10.zip

description: All recordings and source files for the measurements with this participant. For details, please see the "Methods" section of the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.6084/m9.figshare.13265883
title: Additional file 1 of Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice

description: Additional file 1. Additional figures and tables supporting the main text of the manuscript. Referred as SI in the main text.
DOI: 10.6084/m9.figshare.13265883.v1
title: Additional file 1 of Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice

description: Additional file 1. Additional figures and tables supporting the main text of the manuscript. Referred as SI in the main text.
DOI: 10.6084/m9.figshare.13265886
title: Additional file 2 of Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice

description: Additional file 2. Gene ontologies and differential gene expression analysis results associated with the genes in cluster 1 identified from k-means clustering of differentially expressed genes.
DOI: 10.6084/m9.figshare.13265886.v1
title: Additional file 2 of Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice

description: Additional file 2. Gene ontologies and differential gene expression analysis results associated with the genes in cluster 1 identified from k-means clustering of differentially expressed genes.
DOI: 10.6084/m9.figshare.13265898
title: Additional file 5 of Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice

description: Additional file 5. Gene ontologies and differential gene expression analysis results associated with the genes in cluster 4 identified from k-means clustering of differentially expressed genes.
DOI: 10.6084/m9.figshare.13265898.v1
title: Additional file 5 of Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice

description: Additional file 5. Gene ontologies and differential gene expression analysis results associated with the genes in cluster 4 identified from k-means clustering of differentially expressed genes.
DOI: 10.6084/m9.figshare.13265901
title: Additional file 6 of Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice

description: Additional file 6. Gene ontologies and differential gene expression analysis results associated with the genes in cluster 5 identified from k-means clustering of differentially expressed genes.
DOI: 10.6084/m9.figshare.12771476
title: Human_Subjects_Audio_ID_10.zip

description: All recordings and source files for the measurements with this participant. For details, please see the "Methods" section of the publication "Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users".
DOI: 10.6084/m9.figshare.12377063.v1
title: Cu(II)-based coordination polymers: structural determination and protective effect on myocardial ischemia-reperfusion injury by reducing inflammatory response

description: In this work, two Cu(II)-containing coordination polymers, namely, {[Cu<sub>2</sub>(L)<sub>2</sub>(dpyb)(H<sub>2</sub>O)<sub>4</sub>]·6H<sub>2</sub>O}<sub>n</sub> (<b>1</b>) and {[Cu<sub>2</sub>(L)<sub>2</sub>(dpyb)](CH<sub>3</sub>CN)<sub>2</sub>}<sub>n</sub> (<b>2</b>) have been hydrothermally synthesized based on a substituted thiophene carboxylic acid 3,3′-(thiophene-2,5-diyl)dibenzoic acid (H<sub>2</sub>L) and auxiliary N-donor co-ligand 1,4-di(pyridin-4-yl)benzene (dpyb). Furthermore, the protective effect of compounds <b>1</b> and <b>2</b> on myocardial ischemia-reperfusion injury (MIRI) was evaluated and the specific was explored. The real-time reverse transcription-polymerase chain reaction (RT-PCR) revealed the down-regulated relative expression of the <i>nf-κb</i> and <i>mapk</i> genes after compound treatment. The enzyme-linked immunosorbent assay (ELISA) suggested the inhibitory of the compound on inflammatory cytokines IL1-β and TNF-α releasing.
DOI: 10.6084/m9.figshare.12377063
title: Cu(II)-based coordination polymers: structural determination and protective effect on myocardial ischemia-reperfusion injury by reducing inflammatory response

description: In this work, two Cu(II)-containing coordination polymers, namely, {[Cu<sub>2</sub>(L)<sub>2</sub>(dpyb)(H<sub>2</sub>O)<sub>4</sub>]·6H<sub>2</sub>O}<sub>n</sub> (<b>1</b>) and {[Cu<sub>2</sub>(L)<sub>2</sub>(dpyb)](CH<sub>3</sub>CN)<sub>2</sub>}<sub>n</sub> (<b>2</b>) have been hydrothermally synthesized based on a substituted thiophene carboxylic acid 3,3′-(thiophene-2,5-diyl)dibenzoic acid (H<sub>2</sub>L) and auxiliary N-donor co-ligand 1,4-di(pyridin-4-yl)benzene (dpyb). Furthermore, the protective effect of compounds <b>1</b> and <b>2</b> on myocardial ischemia-reperfusion injury (MIRI) was evaluated and the specific was explored. The real-time reverse transcription-polymerase chain reaction (RT-PCR) revealed the down-regulated relative expression of the <i>nf-κb</i> and <i>mapk</i> genes after compound treatment. The enzyme-linked immunosorbent assay (ELISA) suggested the inhibitory of the compound on inflammatory cytokines IL1-β and TNF-α releasing.
DOI: 10.6084/m9.figshare.12293654
title: A new Cu(II)-based coordination polymer: crystal structure and protective effect on cardiac arrest induced by anesthesia via inducing SIRT1 signaling pathway

description: Based on a mixed-ligand strategy, a new coordination polymer with the chemical formula of [Cu(L)(1,4-NDC)]<sub>n</sub> has been successfully synthesized by the reaction of L = 3,6-bis(benzimidazol-1-yl)pyridazine (L) and Cu(NO<sub>3</sub>)<sub>2</sub>·3H<sub>2</sub>O with the presence of H<sub>2</sub>NDC = naphthalene-1,4-dicarboxylic acid as the co-ligand under the solvothermal methods. Furthermore, a green hand grinding technique has been implemented to reduce the particle size of the complex <b>1</b> to generate nanoscale <b>1</b> (denoted as nano <b>1</b> hereafter) with spherical morphology. Furthermore, the protective activity of nano <b>1</b> on cardiac arrest induced by anesthesia was evaluated <i>in vivo</i>. Firstly, after the construction of the cardiac arrest mice model and compound construction, the left ventricular ejection fraction (LVEF) and left ventricular fractional shortening (LVFS) was measured to evaluate the cardiac functions. Then, the <i>sirt 1</i> and <i>nf-κb</i> genes expression level was detected by reverse transcription-polymerase chain reaction (RT-PCR) assay.
DOI: 10.6084/m9.figshare.12293654.v1
title: A new Cu(II)-based coordination polymer: crystal structure and protective effect on cardiac arrest induced by anesthesia via inducing SIRT1 signaling pathway

description: Based on a mixed-ligand strategy, a new coordination polymer with the chemical formula of [Cu(L)(1,4-NDC)]<sub>n</sub> has been successfully synthesized by the reaction of L = 3,6-bis(benzimidazol-1-yl)pyridazine (L) and Cu(NO<sub>3</sub>)<sub>2</sub>·3H<sub>2</sub>O with the presence of H<sub>2</sub>NDC = naphthalene-1,4-dicarboxylic acid as the co-ligand under the solvothermal methods. Furthermore, a green hand grinding technique has been implemented to reduce the particle size of the complex <b>1</b> to generate nanoscale <b>1</b> (denoted as nano <b>1</b> hereafter) with spherical morphology. Furthermore, the protective activity of nano <b>1</b> on cardiac arrest induced by anesthesia was evaluated <i>in vivo</i>. Firstly, after the construction of the cardiac arrest mice model and compound construction, the left ventricular ejection fraction (LVEF) and left ventricular fractional shortening (LVFS) was measured to evaluate the cardiac functions. Then, the <i>sirt 1</i> and <i>nf-κb</i> genes expression level was detected by reverse transcription-polymerase chain reaction (RT-PCR) assay.
DOI: 10.6084/m9.figshare.13266257.v1
title: Additional file 7 of Comparative analysis of the transcriptomes of EDL, psoas, and soleus muscles from mice

description: Additional file 7. FPKM values calculated for the differentially expressed genes identified from pairwise comparisons among EDL, psoas, and soleus are shown in the table.
DOI: 10.6084/m9.figshare.12293672.v1
title: A Co(II)-mediated coordination polymer: treatment capability on post-traumatic osteoarthritis via reducing inflammatory response

description: By using a mixed-ligand approach, a new Co(II)-mediated coordination polymer (CP) with the chemical formula of {[Co(L)(ipa)]·EtOH}<sub>n</sub> (<b>1</b>) has been successfully prepared by reaction of Co(OAc)<sub>2</sub>·4H<sub>2</sub>O with isophthalic acid (H<sub>2</sub>ipa) as well as the N-donor ligand 1,3-bis(benzimidazol-1-yl)-2-propanol (L) under the solvothermal reaction condition. Furthermore, the nano-sheet of compound <b>1</b> was prepared by grinding method, which has good water-dispersion. The <i>in vivo</i> protective effect of nano <b>1</b> was evaluated on post-traumatic osteoarthritis (OA) model. First of all, the Enzyme-linked immunoblotting (ELISA) detection was performed to detect the content of the inflammatory cytokines in OA rats. Next, the relative expression levels of <i>caspase-1</i>, <i>nlrp3</i> as well as <i>il-1β</i> inflammatory cytokine genes were measured with real-time Reverse Transcription Polymerase Chain Reaction (RT-PCR). The potential binding mode of the compound and the NLRP3 was predicted by performing computational docking and pose scoring process, indicating a possible binding site of the compound on NLRP3.