cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2s7s5/1
title: Sequential plant-soil feedback plant biomass data

description: The file contains the shoot (per plant) and root (total) biomass of all the plants in the test phase (phase 3) of the experiment of all experimental units.
DOI: 10.5061/dryad.41pr0/1
title: 24hours_fooddep_experiment_freq

description: Behavior frequency of each treatment and strain.
DOI: 10.5061/dryad.41pr0/2
title: 24hours_fooddep_weight

description: Dry weight of flies in each treatment and strain
DOI: 10.5061/dryad.42k88/1
title: Gange et al Ecography

description: Input raw data for all analyses. The file includes record information about taxonomy (species), location, traits and environmental data associated with each record.
DOI: 10.5061/dryad.50tc7/1
title: Meerkat Data for Dryad

description: Data for all analyses in manuscript
DOI: 10.5061/dryad.5rm68/1
title: Carausius morosus excretory system transcriptome

description: de novo Assembly of Carausius morosus [Insecta: Phamatodea] transcriptome [tissues: posterior midgut with appendices and Malpighian tubules], assembled using CLC Genomics Workbench v8.0 (Qiagen®), tested for duplications, and with contigs fused using CAP3 with standard parameters.
DOI: 10.5061/dryad.67bc0/1
title: Pesce Variation Regulation Screen

description: This tab-deliited text file is a list of 1141  S. cerevisiae strains, each with a single deletion of a non-essential gene. For each strain, identified by its deleted gene, we recorded flow cytometric measurements from two fluorescent reporters, one driven by the constitutive ACT1 promoter, the other by the pheromone-inducible PRM1 promoter.  We combined these measurements to obtain the average strength of signaling (up to and including transcription initiation) and the variation in that signaling strength. We made these measurements at a weak (0.6 nM) and a saturating (20 nM) pheromone dose.
DOI: 10.5061/dryad.75252/1
title: Crataegus subg Americanae + Sanguineae_localities and bioclim data

description: This excel sheet represents the localities from which distributions and ecological climate niches were created for Pacific Northwest members of Crataegus subg. Sanguineae, and subg. Americanae. Alt= altitude, bio1-19 refer to Bioclim variables 1-19, available here: http://www.worldclim.org/bioclim
DOI: 10.5061/dryad.75252/2
title: Crataegus subg. Sanguineae_collection sites + ecological variables

description: Localities and climate, soil, and habitat variables which were collected from 2010-2013. Dist.to."X" refers to the distance from the site to the nearest agriculture, road, or aboveground water source, %"X" refers to the percent coverage of different substrates, and soil."X" refers to soil characteristics.
DOI: 10.5061/dryad.75252/3
title: Crataegus subg. Sanguineae_microsatellite data_binary form for genodive

description: Microsatellite data, coded as binary (Present=7, Absent=9) in the format for GenoDive for all species and cytotypes sampled from Crataegus subg. Sanguineae. Column headers for the genetic data are coded with the name of the locus followed by a period followed by the allele size variant.
DOI: 10.5061/dryad.75pr0/1
title: Density of SBW25 phenotypes and competitors

description: In this file, we include the density of six SBW25 phenotypes and competitors.  Data are log10-(x+1) transformed.
DOI: 10.5061/dryad.7n731/10
title: Individual by gathering event matrix 2009

description: This matrix indicates which individuals were present at which gathering events. Columns are gathering events, rows are individuals. Gathering events are ordered by time and date (from early to late). Presence at a gathering event is marked with a 1. The identities of the individuals can be found in the "list of individuals for the I by GE matrix 2009". The locations of the gathering events can be found in the "list of locations of the gathering events 2009".
DOI: 10.5061/dryad.7n731/11
title: List of individuals for the I by GE matrix 2009

description: List of the identities of the individuals in the "individual by gathering event matrix 2009". Each entry corresponds to a row in the "individual by gathering event matrix 2009".
DOI: 10.5061/dryad.7n731/2
title: List of individuals in the genotype matrix

description: List of the identities of all individuals in the "individual genotypes" matrix. Each entry corresponds to a row in the "individual genotypes" matrix.
DOI: 10.5061/dryad.7n731/4
title: Individual by gathering event matrix 2007

description: This matrix indicates which individuals were present at which gathering events. Columns are gathering events, rows are individuals. Gathering events are ordered by time and date (from early to late). Presence at a gathering event is marked with a 1. The identities of the individuals can be found in the "list of individuals for the I by GE matrix 2007". The locations of the gathering events can be found in the "list of locations of the gathering events 2007".
DOI: 10.5061/dryad.7n731/5
title: List of individuals for the I by GE matrix 2007

description: List of the identities of the individuals in the "individual by gathering event matrix 2007". Each entry corresponds to a row in the "individual by gathering event matrix 2007".
DOI: 10.5061/dryad.7n731/6
title: List of locations of the gathering events 2007

description: List of the locations of all gathering events in 2007. Each entry corresponds to a column in the "individual by gathering event matrix 2007". The values correspond to the rows and columns in the "spatial distance matrix" and the rows in the "eigen vectors of the spatial weighting matrix".
DOI: 10.5061/dryad.7n731/7
title: Individual by gathering event matrix 2008

description: This matrix indicates which individuals were present at which gathering events. Columns are gathering events, rows are individuals. Gathering events are ordered by time and date (from early to late). Presence at a gathering event is marked with a 1. The identities of the individuals can be found in the "list of individuals for the I by GE matrix 2008". The locations of the gathering events can be found in the "list of locations of the gathering events 2008".
DOI: 10.5061/dryad.7n731/8
title: List of individuals for the I by GE matrix 2008

description: List of the identities of the individuals in the "individual by gathering event matrix 2008". Each entry corresponds to a row in the "individual by gathering event matrix 2008".
DOI: 10.5061/dryad.7n731/9
title: List of locations of the gathering events 2008

description: List of the locations of all gathering events in 2008. Each entry corresponds to a column in the "individual by gathering event matrix 2008". The values correspond to the rows and columns in the "spatial distance matrix" and the rows in the "eigen vectors of the spatial weighting matrix".
DOI: 10.5061/dryad.7v910/1
title: Evolution_data_17-0084.R2
DOI: 10.5061/dryad.8bc95/1
title: animal spatial probing data and rheological data

description: This is a matlab file containing the rheological measurements of the used substrates (gels) as well as the data on spatial probing of all the wasps used in the study.
DOI: 10.5061/dryad.8bc95/2
title: examples of ovipositor insertions

description: This matlab file contains data on 3 different insertions in either 2% or 4% gel.
DOI: 10.5061/dryad.8cs37/1
title: Kigoma Town Cichlid Community Matrix
DOI: 10.5061/dryad.8cs37/2
title: Kigoma Deforested Cichlid Community Matrix
DOI: 10.5061/dryad.8cs37/3
title: Kalilani Village Cichlid Community Matrix
DOI: 10.5061/dryad.bv37v/1
title: Data for Dryad

description: Absolute and relatives values for various morphological measurements and results from stress simulations.
DOI: 10.5061/dryad.c5p1f/3
title: DESeq2 Input file

description: Count matrix
DOI: 10.5061/dryad.c5p1f/4
title: Sample IDs
DOI: 10.5061/dryad.cb13r/4
title: Community weighted means of functional traits

description: A .csv file containing the community weighted trait means of each building footprint and remnant garden community surveyed. Continuous trait means represent the mean value of the species present in that community, weighted by abundance. Categorical trait means are all binary (presence/absence) and represent the proportional abundance of the species possessing each trait in the community.
DOI: 10.5061/dryad.cb13r/5
title: RawSoilData

description: A .csv file containing raw soil results for a subset of sites surveyed. Organic matter is reported as %, and all other soil nutrients' units are in mg/kg. For more detailed information on the methodology for collecting and analyzing soil samples, please see: Johnson, AL, Tauzer EC, and Swan, CM. (2015). Human legacies differentially organize functional and phylogenetic diversity of urban herbaceous plant communities at multiple spatial scales. Applied Vegetation Science http://dx.doi.org/10.1111/avsc.12155
DOI: 10.5061/dryad.dk034/1
title: Data archiving_impact of ageing on immunity & immunopathology
DOI: 10.5061/dryad.f207f/1
title: MtDNA haplotype frequencies of Pristipomoides zonatus

description: An excel file with mtDNA frequencies and sequences.
DOI: 10.5061/dryad.f207f/2
title: Microsatellite data for Pristipomoides zonatus

description: Excel file containing microsatellite genotype data
DOI: 10.5061/dryad.f36mq/1
title: Brain volume data

description: Volumetric data for all structures at all time points in directly developing and diapausing pupae
DOI: 10.5061/dryad.f4k16/1
title: SubalpineMeadowEncroachmentData

description: Zip contains 8 data files: 1) MeadowData.csv is the primary data file, with the bulk of the data from the four years of field work; 2) TransectSummary.csv with metadata for individual transects within the 30 detailed survey meadows; 3) MeadowSummary.DetailedSurveys.csv with metadata for each of the 30 detailed survey meadow; 4) MeadowSummary.RapidAssessments.csv with summary data for 306 rapid assessment meadows; 5) MeadowSummary.Subalpine.csv with meadow characteristics for 1233 subalpine meadows in Yosemite National Park; 6) TreeCoresSummary.csv with summary data for 287 tree cores collected 2009-2011 in Yosemite National Park; 7) Cores.PICO.txt is a standard rwl file in decadal/Tucson format; 8) Recruitment.csv with historical recruitment data for the 19 of the 30 detailed survey meadows that each had at least 100 encroaching conifers.
DOI: 10.5061/dryad.hp08t/1
title: Chodkowski_EE_elemental
DOI: 10.5061/dryad.k8776/1
title: Data Romero-Diaz et al 2017

description: Data on juvenile, yearling and adult growth rate, body condition and survival, clutch size and offspring traits (snout-vent-length, tail length and body condition at hatching)
DOI: 10.5061/dryad.m94f4/1
title: HyRAD alignment against de novo generated catalog with Rainbow from sequenced probes (with Paleomix, which uses BWA)
DOI: 10.5061/dryad.m94f4/2
title: HyRAD alignment against Abies alba transcriptome (with Paleomix, which uses BWA)
DOI: 10.5061/dryad.m94f4/3
title: HyRAD-X alignment against Abies alba transcriptome (with Paleomix, which uses BWA)
DOI: 10.5061/dryad.m94f4/4
title: Demultiplexed hyRAD reads, trimmed and filtered according to quality
DOI: 10.5061/dryad.m94f4/5
title: Demultiplexed hyRAD-X reads, trimmed and filtered according to quality
DOI: 10.5061/dryad.m94f4/6
title: SNPs generated with hyRAD aligned against de novo catalog using VCFtools
DOI: 10.5061/dryad.m94f4/7
title: SNPs generated with hyRAD aligned against Abies alba transcriptome using VCFtools
DOI: 10.5061/dryad.mc270/3
title: Plastid_gene_alignments

description: MAFFT gene alignments for 80 plastid protein coding genes, as well as a concatenated alignment in both .phy and .nex formats.  Genes were sequenced using MYbaits targeted exon capture baits, sequenced on Illumina platform, and analyzed using HybPiper.
DOI: 10.5061/dryad.mc270/4
title: Assembly annotation report

description: GO annotation report of the Saltugilia assembly using Annotate as part of the Trinity pipeline.
DOI: 10.5061/dryad.nj1bp/10
title: Supplementary Table S4
DOI: 10.5061/dryad.nj1bp/11
title: Supplementary Table S5
DOI: 10.15156/bio/sh3306603.08fu
title: SH3306603.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3306604.08fu
title: SH3306604.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3306605.08fu
title: SH3306605.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3306606.08fu
title: SH3306606.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3306607.08fu
title: SH3306607.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3306608.08fu
title: SH3306608.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3306609.08fu
title: SH3306609.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3306610.08fu
title: SH3306610.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3306611.08fu
title: SH3306611.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3306612.08fu
title: SH3306612.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.