cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10193111
title: Comparison of patients with invasive intraductal papillary mucinous carcinoma and invasive ductal carcinoma of the pancreas: a pathological type- and stage-matched analysis

description: <b>Objective:</b> We compared the pathological features and stage-matched outcomes of patients with invasive intraductal papillary mucinous carcinoma (IPMC) and invasive ductal carcinoma (IDC) of the pancreas to identify the reasons for these diseases’ differing prognoses. <b>Methods:</b> We analyzed 114 and 560 patients who underwent curative pancreatectomy for invasive IPMC and IDC, respectively, and analyzed their clinicopathological factors. <b>Results:</b> The disease-specific survival (DSS) of patients with invasive IPMC was significantly superior to that of patients with IDC exhibiting all pathological types at all stages. The DSS of patients with invasive IPMC exhibiting tubular adenocarcinoma was significantly superior to that of their counterparts with IDC only among those with stage IIB (<i>p</i> = .045). When comparing patients with stage IIB tubular adenocarcinoma-type invasive IPMC to their counterparts with IDC, the tumor size (2.6 cm vs. 3.3 cm, <i>p</i> = .010), serum level of carbohydrate antigen 19-9 (253 vs. 474 U/mL, <i>p</i> = .035), number of metastatic lymph nodes (3.1 vs. 4.5, <i>p</i> = .033), vascular invasion rate (14% vs. 41%, <i>p</i> = .0019) and local invasion rate (79% vs. 95%, <i>p</i> = .0045) were lower in the former group. Moreover, the frequency of pathological tubular adenocarcinoma grade 1 was higher in patients with invasive IPMC than in those with IDC (38% vs. 12%, <i>p</i> = .0004) as was the R0 resection rate (90% vs. 65%, <i>p</i> = .0027). <b>Conclusions:</b> In pathological type- and stage-matched analyses, invasive IPMC was associated with a better prognosis than IDC only in patients with stage IIB, as factors governing tumor aggressiveness were milder in the former group than in the latter.
DOI: 10.6084/m9.figshare.10193111.v1
title: Comparison of patients with invasive intraductal papillary mucinous carcinoma and invasive ductal carcinoma of the pancreas: a pathological type- and stage-matched analysis

description: <b>Objective:</b> We compared the pathological features and stage-matched outcomes of patients with invasive intraductal papillary mucinous carcinoma (IPMC) and invasive ductal carcinoma (IDC) of the pancreas to identify the reasons for these diseases’ differing prognoses. <b>Methods:</b> We analyzed 114 and 560 patients who underwent curative pancreatectomy for invasive IPMC and IDC, respectively, and analyzed their clinicopathological factors. <b>Results:</b> The disease-specific survival (DSS) of patients with invasive IPMC was significantly superior to that of patients with IDC exhibiting all pathological types at all stages. The DSS of patients with invasive IPMC exhibiting tubular adenocarcinoma was significantly superior to that of their counterparts with IDC only among those with stage IIB (<i>p</i> = .045). When comparing patients with stage IIB tubular adenocarcinoma-type invasive IPMC to their counterparts with IDC, the tumor size (2.6 cm vs. 3.3 cm, <i>p</i> = .010), serum level of carbohydrate antigen 19-9 (253 vs. 474 U/mL, <i>p</i> = .035), number of metastatic lymph nodes (3.1 vs. 4.5, <i>p</i> = .033), vascular invasion rate (14% vs. 41%, <i>p</i> = .0019) and local invasion rate (79% vs. 95%, <i>p</i> = .0045) were lower in the former group. Moreover, the frequency of pathological tubular adenocarcinoma grade 1 was higher in patients with invasive IPMC than in those with IDC (38% vs. 12%, <i>p</i> = .0004) as was the R0 resection rate (90% vs. 65%, <i>p</i> = .0027). <b>Conclusions:</b> In pathological type- and stage-matched analyses, invasive IPMC was associated with a better prognosis than IDC only in patients with stage IIB, as factors governing tumor aggressiveness were milder in the former group than in the latter.
DOI: 10.6084/m9.figshare.10192412
title: Fake news game (JOC, 2019) dataset

description: Raw dataset for Basol, Roozenbeek, and van der Linden (2019) Journal of Cognition.<br>
DOI: 10.6084/m9.figshare.10192058
title: Overexpression of the <i>Arabidopsis</i> and winter squash superoxide dismutase genes enhances chilling tolerance via ABA-sensitive transcriptional regulation in transgenic <i>Arabidopsis</i>

description: The winter squash (<i>Cucurbita moschata</i>, Cm) superoxide dismutase (SOD<i>) CmSOD</i> gene and <i>Arabidopsis thaliana</i> (<i>At</i>)<i>SOD</i> gene were transferred under a ubiquitin promoter into <i>Arabidopsis</i> via <i>Agrobacterium tumefaciens</i>. The expression and amount of SOD and the SOD activities in the <i>AtSOD</i> and <i>CmSOD</i> transgenic lines were significantly higher than those of non-transgenic (NT) plants exposed to 23 or 4°C treatment for 6 ~ 192-h periods. Furthermore, expressions of the cold-inducible gene (<i>AtCBF2</i>) and desiccation-responsible transcription factors (<i>AtRD</i>29A/B) were also activated in all transgenic lines compared to NT plants after chilling treatments. Compared to NT plants under chilling stress, superoxide (•O2<sup>−</sup>) accumulation was significantly lower, and chlorophyll (Chl) contents were significantly higher in all transgenic lines with higher SOD activity. Moreover, Arabidopsis seedlings overexpressing <i>AtSOD</i> and <i>CmSOD</i> also displayed greater resistance to chilling and less oxidative injury than NT plants under chilled conditions, indicating that the overexpression of <i>AtSOD</i> and <i>CmSOD</i> in Arabidopsis enhanced chilling tolerance by eliminating •O2<sup>−</sup>. The expression of <i>AtRD29A</i> was strongly up-regulated only in <i>AtSOD</i> transgenic plants treated with abscisic acid (ABA), while it was repressed in other transgenic plants, indicating ABA-sensitive <i>AtCBF2</i> and <i>AtRD29A/B</i> transcriptional regulation signaling pathways in transgenic <i>Arabidopsis</i> under chilling conditions.
DOI: 10.6084/m9.figshare.10191890
title: Uncertainties of a mixed-integer distribution system planning considering energy storage system degradation

description: This file covers data of PV output, WT output, load demand, LMP, regulation service signal and prices in the 33-bus distribution system under 4, 20, 40 and 100 scenarios. All these typical scenarios are generated via a Gaussian Mixture Model (GMM) method.<br><br>
DOI: 10.6084/m9.figshare.10192412.v1
title: Fake news game (JOC, 2019) dataset

description: Raw dataset for Basol, Roozenbeek, and van der Linden (2019) Journal of Cognition.<br>
DOI: 10.6084/m9.figshare.10192058.v1
title: Overexpression of the <i>Arabidopsis</i> and winter squash superoxide dismutase genes enhances chilling tolerance via ABA-sensitive transcriptional regulation in transgenic <i>Arabidopsis</i>

description: The winter squash (<i>Cucurbita moschata</i>, Cm) superoxide dismutase (SOD<i>) CmSOD</i> gene and <i>Arabidopsis thaliana</i> (<i>At</i>)<i>SOD</i> gene were transferred under a ubiquitin promoter into <i>Arabidopsis</i> via <i>Agrobacterium tumefaciens</i>. The expression and amount of SOD and the SOD activities in the <i>AtSOD</i> and <i>CmSOD</i> transgenic lines were significantly higher than those of non-transgenic (NT) plants exposed to 23 or 4°C treatment for 6 ~ 192-h periods. Furthermore, expressions of the cold-inducible gene (<i>AtCBF2</i>) and desiccation-responsible transcription factors (<i>AtRD</i>29A/B) were also activated in all transgenic lines compared to NT plants after chilling treatments. Compared to NT plants under chilling stress, superoxide (•O2<sup>−</sup>) accumulation was significantly lower, and chlorophyll (Chl) contents were significantly higher in all transgenic lines with higher SOD activity. Moreover, Arabidopsis seedlings overexpressing <i>AtSOD</i> and <i>CmSOD</i> also displayed greater resistance to chilling and less oxidative injury than NT plants under chilled conditions, indicating that the overexpression of <i>AtSOD</i> and <i>CmSOD</i> in Arabidopsis enhanced chilling tolerance by eliminating •O2<sup>−</sup>. The expression of <i>AtRD29A</i> was strongly up-regulated only in <i>AtSOD</i> transgenic plants treated with abscisic acid (ABA), while it was repressed in other transgenic plants, indicating ABA-sensitive <i>AtCBF2</i> and <i>AtRD29A/B</i> transcriptional regulation signaling pathways in transgenic <i>Arabidopsis</i> under chilling conditions.
DOI: 10.6084/m9.figshare.10191890.v1
title: Uncertainties of a mixed-integer distribution system planning method considering energy storage system degradation

description: This file covers data of PV output, WT output, load demand, LMP, regulation service signal and prices in the 33 bus distribution system under 4, 20, 40 and 100 scenarios. All these typical scenarios are generated via a Gaussian Mixture Model (GMM) method.
DOI: 10.6084/m9.figshare.10185092
title: Supplementary table.doc

description: <b>Clinical characteristics in all Offspring Stratified by Maternal Polycystic Ovary Syndrome Diagnosis</b><b></b>
DOI: 10.6084/m9.figshare.10185092.v1
title: Supplementary table.doc

description: <b>Clinical characteristics in all Offspring Stratified by Maternal Polycystic Ovary Syndrome Diagnosis</b><b></b>
DOI: 10.6084/m9.figshare.10185032
title: Vibrio_cholerae_O395_TCP2_annotation.gff

description: Genome annotation for Vibrio cholerae TCP2 genome.
DOI: 10.6084/m9.figshare.10185059
title: Data on urban classification and structure in metropolitan areas in the United States, 1990-2010

description: These data layers in this collection represent urban classes and rural land 1990-2010 within Metropolitan Statistical Areas (MSAs) The data can be downloaded as a .7z archive. Once extracted, the data layers can be found in the Data subdirectory which contains a map document (CensusGHSL_MSA.mxd) to open the data and map layouts in an ArcMap project and two subfolders. The MSA_Boundaries subfolder contains the MSA boundaries of the year 2000. The Urban_Classes subfolder contains the produced urban classes based on block-level census data and GHSL for the years 1990, 2000 and 2010, and for different GHSL built-up thresholds (1%, 25% and 50%). In the Documentation subdirectory the user will find a data dictionary, and an illustrative image of the data collection (.png).
DOI: 10.6084/m9.figshare.10185029
title: Vibrio_cholerae_O395_TCP2_proteins.fasta

description: Fasta file of proteins encoded in the Vibrio cholerae TCP2 genome.
DOI: 10.6084/m9.figshare.10185032.v1
title: Vibrio_cholerae_O395_TCP2_annotation.gff

description: Genome annotation for Vibrio cholerae TCP2 genome.
DOI: 10.6084/m9.figshare.10185059.v1
title: Data on urban classification and structure in metropolitan areas in the United States, 1990-2010

description: These data layers in this collection represent urban classes and rural land 1990-2010 within Metropolitan Statistical Areas (MSAs) The data can be downloaded as a .7z archive. Once extracted, the data layers can be found in the Data subdirectory which contains a map document (CensusGHSL_MSA.mxd) to open the data and map layouts in an ArcMap project and two subfolders. The MSA_Boundaries subfolder contains the MSA boundaries of the year 2000. The Urban_Classes subfolder contains the produced urban classes based on block-level census data and GHSL for the years 1990, 2000 and 2010, and for different GHSL built-up thresholds (1%, 25% and 50%). In the Documentation subdirectory the user will find a data dictionary, and an illustrative image of the data collection (.png).
DOI: 10.6084/m9.figshare.10185026
title: Vibrio_cholerae_O395_TCP2_gene_nucleotides.fasta

description: Fasta file of genes encoded in the Vibrio cholerae TCP2 genome.
DOI: 10.6084/m9.figshare.10185023
title: Vibrio_cholerae_O395_TCP2_genome.fasta

description: Vibrio cholerae TCP2 genome (two chromosomes, CP000626.1 and CP000627.1)
DOI: 10.6084/m9.figshare.10185029.v1
title: Vibrio_cholerae_O395_TCP2_proteins.fasta

description: Fasta file of proteins encoded in the Vibrio cholerae TCP2 genome.
DOI: 10.6084/m9.figshare.10185023.v1
title: Vibrio_cholerae_O395_TCP2_genome.fasta

description: Vibrio cholerae TCP2 genome (two chromosomes, CP000626.1 and CP000627.1)
DOI: 10.6084/m9.figshare.10185026.v1
title: Vibrio_cholerae_O395_TCP2_gene_nucleotides.fasta

description: Fasta file of genes encoded in the Vibrio cholerae TCP2 genome.
DOI: 10.6084/m9.figshare.10185020
title: Vibrio_cholerae_EV_protein_differential_quantities.tsv

description: Differential inclusion of proteins in the extracellular vesicles of Vibrio cholerae compared to whole cells, according to cuffdiff.
DOI: 10.6084/m9.figshare.10185011
title: Bashar H. Malkawi, The EU economic and financial structure re-engineered: The financial crisis and its aftermath

description: The purpose of the paper is to examine the restructuring of the EU financial system after the crisis.
DOI: 10.6084/m9.figshare.10185014
title: Vibrio_cholerae_EV_RNA_differential_quantities.tsv

description: Differential inclusion of RNA (from coding regions) in the extracellular vesicles of Vibrio cholerae compared to whole cells, according to cuffdiff.
DOI: 10.6084/m9.figshare.10185017
title: Vibrio_cholerae_EV_DNA_differential_quantities.tsv

description: Differential inclusion of DNA in the extracellular vesicles of Vibrio cholerae compared to whole cells, according to cuffdiff.
DOI: 10.6084/m9.figshare.10185020.v1
title: Vibrio_cholerae_EV_protein_differential_quantities.tsv

description: Differential inclusion of proteins in the extracellular vesicles of Vibrio cholerae compared to whole cells, according to cuffdiff.
DOI: 10.6084/m9.figshare.10185011.v1
title: Bashar H. Malkawi, The EU economic and financial structure re-engineered: The financial crisis and its aftermath

description: The purpose of the paper is to examine the restructuring of the EU financial system after the crisis.
DOI: 10.6084/m9.figshare.10185014.v1
title: Vibrio_cholerae_EV_RNA_differential_quantities.tsv

description: Differential inclusion of RNA (from coding regions) in the extracellular vesicles of Vibrio cholerae compared to whole cells, according to cuffdiff.
DOI: 10.6084/m9.figshare.10185017.v1
title: Vibrio_cholerae_EV_DNA_differential_quantities.tsv

description: Differential inclusion of DNA in the extracellular vesicles of Vibrio cholerae compared to whole cells, according to cuffdiff.
DOI: 10.6084/m9.figshare.10184993
title: MOESM4 of Individual variation of the masticatory system dominates 3D skull shape in the herbivory-adapted marsupial wombats

description: Additional file 4. Table of specimen numbers, origin, ethics permits (where applicable) and notes of modifications of 3D geometries.
DOI: 10.6084/m9.figshare.10184993.v1
title: MOESM4 of Individual variation of the masticatory system dominates 3D skull shape in the herbivory-adapted marsupial wombats

description: Additional file 4. Table of specimen numbers, origin, ethics permits (where applicable) and notes of modifications of 3D geometries.
DOI: 10.6084/m9.figshare.10184954
title: MOESM2 of Scaling computational genomics to millions of individuals with GPUs

description: Additional file 2. Benchmarking code from Additional fileÂ 1: Figure S1
DOI: 10.6084/m9.figshare.10184954.v1
title: MOESM2 of Scaling computational genomics to millions of individuals with GPUs

description: Additional file 2. Benchmarking code from Additional fileÂ 1: Figure S1
DOI: 10.6084/m9.figshare.10184921
title: MOESM4 of Analysis of the clinical significance of DNA methylation in gastric cancer based on a genome-wide high-resolution array

description: Additional file 4: The raw data of the clinical profile of the validation set of 141 GC patients.
DOI: 10.6084/m9.figshare.10184921.v1
title: MOESM4 of Analysis of the clinical significance of DNA methylation in gastric cancer based on a genome-wide high-resolution array

description: Additional file 4: The raw data of the clinical profile of the validation set of 141 GC patients.
DOI: 10.6084/m9.figshare.10184903
title: MOESM2 of Analysis of the clinical significance of DNA methylation in gastric cancer based on a genome-wide high-resolution array

description: Additional file 2: The data of the hypermethylated and hypomethylated genes that were differentially expressed between the normal and tumor tissues in the discovery set of 16 GC patients.
DOI: 10.6084/m9.figshare.10184909
title: MOESM3 of Analysis of the clinical significance of DNA methylation in gastric cancer based on a genome-wide high-resolution array

description: Additional file 3: The raw data of the clinical profile of the discovery set of 16 GC patients.
DOI: 10.6084/m9.figshare.10184903.v1
title: MOESM2 of Analysis of the clinical significance of DNA methylation in gastric cancer based on a genome-wide high-resolution array

description: Additional file 2: The data of the hypermethylated and hypomethylated genes that were differentially expressed between the normal and tumor tissues in the discovery set of 16 GC patients.
DOI: 10.6084/m9.figshare.10184894
title: MOESM1 of Analysis of the clinical significance of DNA methylation in gastric cancer based on a genome-wide high-resolution array

description: Additional file 1: The raw data of the results of genome-wide methylation profiling using an Illumina Methylation EPIC BeadChip assay.
DOI: 10.6084/m9.figshare.10184909.v1
title: MOESM3 of Analysis of the clinical significance of DNA methylation in gastric cancer based on a genome-wide high-resolution array

description: Additional file 3: The raw data of the clinical profile of the discovery set of 16 GC patients.
DOI: 10.6084/m9.figshare.10184894.v1
title: MOESM1 of Analysis of the clinical significance of DNA methylation in gastric cancer based on a genome-wide high-resolution array

description: Additional file 1: The raw data of the results of genome-wide methylation profiling using an Illumina Methylation EPIC BeadChip assay.
DOI: 10.6084/m9.figshare.10184861
title: MOESM1 of Clinical and laboratory characteristics and follow up of 62 cases of ketotic hypoglycemia: a retrospective study

description: Additional file 1. Chart reviews including demographic, clinical, and laboratory data and follow-up of patients with ketotic hypoglycemia.
DOI: 10.6084/m9.figshare.10184861.v1
title: MOESM1 of Clinical and laboratory characteristics and follow up of 62 cases of ketotic hypoglycemia: a retrospective study

description: Additional file 1. Chart reviews including demographic, clinical, and laboratory data and follow-up of patients with ketotic hypoglycemia.
DOI: 10.6084/m9.figshare.10184837
title: MOESM3 of A novel miniature transposon-like element discovered in the coding sequence of a gene that encodes for 5-formyltetrahydrofolate in wheat

description: Additional file 3: Table S3. Site-specific primers flanking insertions of Mariam.
DOI: 10.6084/m9.figshare.10184831
title: MOESM2 of A novel miniature transposon-like element discovered in the coding sequence of a gene that encodes for 5-formyltetrahydrofolate in wheat

description: Additional file 2: Table S2. T. aestivum accessions used in this study and their geographic origin.
DOI: 10.6084/m9.figshare.10184837.v1
title: MOESM3 of A novel miniature transposon-like element discovered in the coding sequence of a gene that encodes for 5-formyltetrahydrofolate in wheat

description: Additional file 3: Table S3. Site-specific primers flanking insertions of Mariam.
DOI: 10.6084/m9.figshare.10184825
title: MOESM1 of A novel miniature transposon-like element discovered in the coding sequence of a gene that encodes for 5-formyltetrahydrofolate in wheat

description: Additional file 1: Table S1. Intact Mariam insertions retrieved from five wheat species.
DOI: 10.6084/m9.figshare.10184831.v1
title: MOESM2 of A novel miniature transposon-like element discovered in the coding sequence of a gene that encodes for 5-formyltetrahydrofolate in wheat

description: Additional file 2: Table S2. T. aestivum accessions used in this study and their geographic origin.
DOI: 10.6084/m9.figshare.10184816
title: MOESM8 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 8: Table S8. Results of Y chromosomal DNA haplotypes and haplogroups.
DOI: 10.6084/m9.figshare.10184825.v1
title: MOESM1 of A novel miniature transposon-like element discovered in the coding sequence of a gene that encodes for 5-formyltetrahydrofolate in wheat

description: Additional file 1: Table S1. Intact Mariam insertions retrieved from five wheat species.
DOI: 10.6084/m9.figshare.10184810
title: MOESM7 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 7: Table S7. List of strain information, mitochondrial DNA haplogroup, Y chromosomal haplogroup and population assignment of H. pylori in the Dominican Republic.
DOI: 10.6084/m9.figshare.10184816.v1
title: MOESM8 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 8: Table S8. Results of Y chromosomal DNA haplotypes and haplogroups.
DOI: 10.6084/m9.figshare.10184804
title: MOESM5 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 5: Table S5. Sources and population assignment of H. pylori global reference strains.
DOI: 10.6084/m9.figshare.10184807
title: MOESM6 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 6: Table S6. Results of mitochondrial DNA haplotypes and haplogroups.
DOI: 10.6084/m9.figshare.10184810.v1
title: MOESM7 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 7: Table S7. List of strain information, mitochondrial DNA haplogroup, Y chromosomal haplogroup and population assignment of H. pylori in the Dominican Republic.
DOI: 10.6084/m9.figshare.10184804.v1
title: MOESM5 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 5: Table S5. Sources and population assignment of H. pylori global reference strains.
DOI: 10.6084/m9.figshare.10184807.v1
title: MOESM6 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 6: Table S6. Results of mitochondrial DNA haplotypes and haplogroups.
DOI: 10.6084/m9.figshare.10184795
title: MOESM4 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 4: Table S4. Primers used for DNA sequencing of H. pylori.
DOI: 10.6084/m9.figshare.10184789
title: MOESM3 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 3: Table S3. Primers used for minisequencing of Human Y-SNPs.
DOI: 10.6084/m9.figshare.10184789.v1
title: MOESM3 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 3: Table S3. Primers used for minisequencing of Human Y-SNPs.
DOI: 10.6084/m9.figshare.10184795.v1
title: MOESM4 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 4: Table S4. Primers used for DNA sequencing of H. pylori.
DOI: 10.6084/m9.figshare.10184780
title: MOESM2 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 2: Table S2. Primers used for multiplex amplification of human Y-SNPs.
DOI: 10.6084/m9.figshare.10184774
title: MOESM1 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 1: Table S1. Primers used for DNA sequencing of human mitochondrial DNA.
DOI: 10.6084/m9.figshare.10184774.v1
title: MOESM1 of Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic

description: Additional file 1: Table S1. Primers used for DNA sequencing of human mitochondrial DNA.