cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh147272.07fu
title: SH147272.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh147273.07fu
title: SH147273.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh147274.07fu
title: SH147274.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh147275.07fu
title: SH147275.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh147276.07fu
title: SH147276.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh147277.07fu
title: SH147277.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.22603910.v1
title: Additional file 8 of Systematic and benchmarking studies of pipelines for mammal WGBS data in the novel NGS platform

description: Additional file 8: Table S2. Time-consuming from four softwares on mouse samples in silico.
DOI: 10.6084/m9.figshare.11593977.v3
title: Diagonally Dominant Principal Component Analysis

description: We consider the problem of decomposing a large covariance matrix into the sum of a low-rank matrix and a diagonally dominant matrix, and we call this problem the “diagonally dominant principal component analysis (DD-PCA).” DD-PCA is an effective tool for designing statistical methods for strongly correlated data. We showcase the use of DD-PCA in two statistical problems: covariance matrix estimation and global detection in multiple testing. Using the output of DD-PCA, we propose a new estimator for estimating a large covariance matrix with factor structure. Thanks to a nice property of diagonally dominant matrices, this estimator enjoys the advantage of simultaneous good estimation of the covariance matrix and the precision matrix (by a plain inversion). A plug-in of this estimator to linear discriminant analysis and portfolio optimization yields appealing performance in real data. We also propose two new tests for testing the global null hypothesis in multiple testing when the <i>z</i>-scores have a factor covariance structure. Both tests first use DD-PCA to adjust the individual <i>p</i>-values and then plug in the adjusted <i>p</i>-values to the higher criticism (HC) test. These new tests significantly improve over the HC test and compare favorably with other existing tests. For computation of DD-PCA, we propose an iterative projection algorithm and an ADMM algorithm. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.22601464.v1
title: Additional file 3 of Genome-wide identification and characterization of polycomb repressive complex 2 core components in upland cotton (Gossypium hirsutum L.)

description: Additional file 3: Table S3. Predicted protein-protein interactions of G. hirsutum PRC2 core components in the STRING database.
DOI: 10.6084/m9.figshare.22603825.v1
title: Additional file 5 of Disruption of protein geranylgeranylation in the cerebellum causes cerebellar hypoplasia and ataxia via blocking granule cell progenitor proliferation

description: Additional file 5. Table of source data.
DOI: 10.6084/m9.figshare.22603859
title: Additional file 1 of Morphine suppresses the immune function of lung cancer by up-regulating MAEL expression

description: Additional file 1.
DOI: 10.6084/m9.figshare.22601450
title: Additional file 4 of Genome-wide liver transcriptomic profiling of a malaria mouse model reveals disturbed immune and metabolic responses

description: Additional file 4: Table S2. Detailed information on RNA-seq.
DOI: 10.6084/m9.figshare.6875270.v1
title: Additional file 3: of Regulation of the adaptation to ER stress by KLF4 facilitates melanoma cell metastasis via upregulating NUCB2 expression

description: Table S1. Differentially expressed genes. (XLS 4331 kb)
DOI: 10.6084/m9.figshare.6875240.v2
title: Additional file 1 of Regulation of the adaptation to ER stress by KLF4 facilitates melanoma cell metastasis via upregulating NUCB2 expression

description: Table S2. Clinical information of Patients with melanoma. (XLSX 11 kb)
DOI: 10.14473/csda/slh7z2/x6gtnh
title: K_V1502.pdf

description: Karty
DOI: 10.14473/csda/slh7z2/zsi7rd
title: PR09_V1502.pdf

description: Zájem politiků o občany a možnosti občanů ovlivnit veřejnou sféru – únor 2015. Tisková zpráva CVVM
DOI: 10.14473/csda/slh7z2/hfppwi
title: PR02_V1502.pdf

description: Pocit bezpečí a bezpečnostní rizika a hrozby z pohledu české veřejnosti – únor 2015. Tisková zpráva CVVM.
DOI: 10.14473/csda/slh7z2/w5lynd
title: PR12_V1502.pdf

description: Česká veřejnost o tzv. Islámském státu – únor 2015. Tisková zpráva CVVM
DOI: 10.14473/csda/slh7z2/ec4d4z
title: PR04_V1502.pdf

description: Postoje české veřejnosti k cizincům – únor 2015. Tisková zpráva CVVM
DOI: 10.14473/csda/slh7z2/vdangn
title: PR05_V1502.pdf

description: Vztah české veřejnosti k národnostním skupinám žijícím v ČR – únor 2015 . Tisková zpráva CVVM.
DOI: 10.6084/m9.figshare.22603889
title: Additional file 1 of Systematic and benchmarking studies of pipelines for mammal WGBS data in the novel NGS platform

description: Additional file 1: Table S3. Property among GenoLab M, NextSeq X and NovaSeq 6000 platforms.
DOI: 10.6084/m9.figshare.22603889.v1
title: Additional file 1 of Systematic and benchmarking studies of pipelines for mammal WGBS data in the novel NGS platform

description: Additional file 1: Table S3. Property among GenoLab M, NextSeq X and NovaSeq 6000 platforms.
DOI: 10.6084/m9.figshare.12118350.v1
title: A comparative study of mini- versus standard laparoscopy in the treatment of renal cysts

description: This study aimed to investigate the safety and efficacy of mini-laparoscopy for renal cyst unroofing. Eighty-six patients for treatment of renal cysts that met the selection criteria were included in this study. They were divided into two groups. Forty-five patients underwent cyst unroofing <i>via</i> mini-laparoscopy (Group M), and 43 patients underwent cyst unroofing <i>via</i> standard laparoscopy (Group S). There were no differences between the two groups in terms of sex, age, body mass index or clinical data. Data from the groups were recorded and analyzed. The average hospital stays were shorter (<i>p</i> = .039) and postoperative painkiller demand was lower (<i>p</i> = .031) in Group M than in Group S. Forty-one out of 45 procedures in Group M were successful, and all 43 cases in Group S were successfully. With a follow-up period of 0.5 to 5.5 years, there was no significant difference in recovery rate (<i>p</i> = .213). Questionnaires showed that patients in Group M were significantly more satisfied with their cosmetic results than were patients in Group S (<i>p</i> = .041). Our findings suggest that renal cyst decortications with mini-laparoscopic instruments are as safe and effective as procedures using standard laparoscopic instruments. Cosmetically, the results are better with mini-laparoscopy than with standard laparoscopic unroofing.
DOI: 10.6084/m9.figshare.22604032
title: Additional file 8 of Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage

description: Additional file 8: Table S7. Predominantly expressed genes in subgenomes in different cell types.
DOI: 10.6084/m9.figshare.22604026
title: Additional file 6 of Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage

description: Additional file 6: Table S5. Marker genes involved in the identification of cell types.
DOI: 10.6084/m9.figshare.22604014.v1
title: Additional file 2 of Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage

description: Additional file 2: Table S1. Summary of the cell data in Chinese cabbage vegetative shoot apex and young leaf samples before and after filtering.
DOI: 10.6084/m9.figshare.22604020.v1
title: Additional file 4 of Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage

description: Additional file 4: Table S3. Cluster-enriched gene list and gene descriptions for 19 cell clusters.
DOI: 10.6084/m9.figshare.11593977.v2
title: Diagonally Dominant Principal Component Analysis

description: We consider the problem of decomposing a large covariance matrix into the sum of a low-rank matrix and a diagonally dominant matrix, and we call this problem the “diagonally dominant principal component analysis (DD-PCA).” DD-PCA is an effective tool for designing statistical methods for strongly correlated data. We showcase the use of DD-PCA in two statistical problems: covariance matrix estimation and global detection in multiple testing. Using the output of DD-PCA, we propose a new estimator for estimating a large covariance matrix with factor structure. Thanks to a nice property of diagonally dominant matrices, this estimator enjoys the advantage of simultaneous good estimation of the covariance matrix and the precision matrix (by a plain inversion). A plug-in of this estimator to linear discriminant analysis and portfolio optimization yields appealing performance in real data. We also propose two new tests for testing the global null hypothesis in multiple testing when the <i>z</i>-scores have a factor covariance structure. Both tests first use DD-PCA to adjust the individual <i>p</i>-values and then plug in the adjusted <i>p</i>-values to the higher criticism (HC) test. These new tests significantly improve over the HC test and compare favorably with other existing tests. For computation of DD-PCA, we propose an iterative projection algorithm and an ADMM algorithm. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.22604038.v1
title: Additional file 10 of Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage

description: Additional file 10: Table S9. Differentially expressed genes (DEGs) for each cell type between the control and heat conditions.
DOI: 10.6084/m9.figshare.22604044
title: Additional file 12 of Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage

description: Additional file 12: Table S11. Different genes showed opposite expression patterns in different cell types under heat stress conditions.
DOI: 10.6084/m9.figshare.22604026.v1
title: Additional file 6 of Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage

description: Additional file 6: Table S5. Marker genes involved in the identification of cell types.
DOI: 10.6084/m9.figshare.22604029
title: Additional file 7 of Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage

description: Additional file 7: Table S6. Candidate cell type marker genes identified in Chinese cabbage.
DOI: 10.6084/m9.figshare.22604023.v1
title: Additional file 5 of Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage

description: Additional file 5: Table S4. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses for cluster-enriched genes in 19 cell clusters.
DOI: 10.6084/m9.figshare.22604041
title: Additional file 11 of Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage

description: Additional file 11: Table S10. Gene expression changed after heat treatment in only one cell type.
DOI: 10.6084/m9.figshare.22604041.v1
title: Additional file 11 of Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage

description: Additional file 11: Table S10. Gene expression changed after heat treatment in only one cell type.
DOI: 10.6084/m9.figshare.22601456
title: Additional file 6 of Genome-wide liver transcriptomic profiling of a malaria mouse model reveals disturbed immune and metabolic responses

description: Additional file 6: Table S4. Overlapping GO and KEGG terms of coexpression modules.
DOI: 10.6084/m9.figshare.22601453
title: Additional file 5 of Genome-wide liver transcriptomic profiling of a malaria mouse model reveals disturbed immune and metabolic responses

description: Additional file 5: Table S3. GO terms related to liver injury and Fisher's exact test of term enrichment.
DOI: 10.6084/m9.figshare.22601459.v1
title: Additional file 7 of Genome-wide liver transcriptomic profiling of a malaria mouse model reveals disturbed immune and metabolic responses

description: Additional file 7: Table S5. Homologous genes among Plasmodium spp.
DOI: 10.6084/m9.figshare.14737152.v1
title: Additional file 2 of Study on the differences of gene expression between pear and apple wild cultivation materials based on RNA-seq technique

description: Additional file 2.
DOI: 10.6084/m9.figshare.12118350
title: A comparative study of mini- versus standard laparoscopy in the treatment of renal cysts

description: This study aimed to investigate the safety and efficacy of mini-laparoscopy for renal cyst unroofing. Eighty-six patients for treatment of renal cysts that met the selection criteria were included in this study. They were divided into two groups. Forty-five patients underwent cyst unroofing <i>via</i> mini-laparoscopy (Group M), and 43 patients underwent cyst unroofing <i>via</i> standard laparoscopy (Group S). There were no differences between the two groups in terms of sex, age, body mass index or clinical data. Data from the groups were recorded and analyzed. The average hospital stays were shorter (<i>p</i> = .039) and postoperative painkiller demand was lower (<i>p</i> = .031) in Group M than in Group S. Forty-one out of 45 procedures in Group M were successful, and all 43 cases in Group S were successfully. With a follow-up period of 0.5 to 5.5 years, there was no significant difference in recovery rate (<i>p</i> = .213). Questionnaires showed that patients in Group M were significantly more satisfied with their cosmetic results than were patients in Group S (<i>p</i> = .041). Our findings suggest that renal cyst decortications with mini-laparoscopic instruments are as safe and effective as procedures using standard laparoscopic instruments. Cosmetically, the results are better with mini-laparoscopy than with standard laparoscopic unroofing.
DOI: 10.6084/m9.figshare.22601456.v1
title: Additional file 6 of Genome-wide liver transcriptomic profiling of a malaria mouse model reveals disturbed immune and metabolic responses

description: Additional file 6: Table S4. Overlapping GO and KEGG terms of coexpression modules.
DOI: 10.6084/m9.figshare.22604186.v1
title: Additional file 3 of Role of crescents for lupus nephritis in clinical, pathological and prognosis: a single-center retrospective cohort study

description: Additional file 3: Treatment regimens of LN patients stratified by proteinuria.
DOI: 10.6084/m9.figshare.22604186
title: Additional file 3 of Role of crescents for lupus nephritis in clinical, pathological and prognosis: a single-center retrospective cohort study

description: Additional file 3: Treatment regimens of LN patients stratified by proteinuria.
DOI: 10.6084/m9.figshare.22604183.v1
title: Additional file 2 of Role of crescents for lupus nephritis in clinical, pathological and prognosis: a single-center retrospective cohort study

description: Additional file 2: Correlations between crescent and clinical and pathological parameters at the time of renal biopsy.
DOI: 10.6084/m9.figshare.22604195
title: Additional file 6 of Role of crescents for lupus nephritis in clinical, pathological and prognosis: a single-center retrospective cohort study

description: Additional file 6: Treatment regimens of LN patients stratified by proteinuria grouped according to crescent.
DOI: 10.6084/m9.figshare.22604192.v1
title: Additional file 5 of Role of crescents for lupus nephritis in clinical, pathological and prognosis: a single-center retrospective cohort study

description: Additional file 5: Pathological characteristics of LN patients stratified by proteinuria grouped according to crescent.
DOI: 10.6084/m9.figshare.22604110
title: Additional file 5 of Genome-wide identification and expression analysis of the SAUR gene family in foxtail millet (Setaria italica L.)

description: Additional file 5: Table S5. Cis-regulatory elements in the promoter region of SAUR genes.
DOI: 10.6084/m9.figshare.21031345.v1
title: Coordinates of Real-like paths

description: This zip contains a series of coordiantes of six real-like optical fiber links generated by electronic map API (http://lbsyun.baidu.com), using the route planning function. They could be used to compute Sagnac corrections for time transfer over optical fiber.
The data are referenced in our companion paper " Estimation of positioning sparsity for Sagnac correction in fiber optic time transfer ".
DOI: 10.6084/m9.figshare.22604107.v1
title: Additional file 4 of Genome-wide identification and expression analysis of the SAUR gene family in foxtail millet (Setaria italica L.)

description: Additional file 4: Table S4. Proteinmotif analysis of SAURs gene family in foxtail millet.
DOI: 10.6084/m9.figshare.22604180
title: Additional file 1 of Role of crescents for lupus nephritis in clinical, pathological and prognosis: a single-center retrospective cohort study

description: Additional file 1: Drugs used to maintain remission.
DOI: 10.6084/m9.figshare.22604180.v1
title: Additional file 1 of Role of crescents for lupus nephritis in clinical, pathological and prognosis: a single-center retrospective cohort study

description: Additional file 1: Drugs used to maintain remission.
DOI: 10.6084/m9.figshare.22604101.v1
title: Additional file 2 of Genome-wide identification and expression analysis of the SAUR gene family in foxtail millet (Setaria italica L.)

description: Additional file 2: Table S2. Secondary structure prediction and subcellular localization of SiSAURs infoxtail millet.