cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5682052.v2
title: Fig 2B HFCS_colorplot data

description: data files for Fig 2A color plot for HFCS group
DOI: 10.6084/m9.figshare.5682052.v1
title: HFCS_colorplot

description: data files for Fig 2A color plot for HFCS group
DOI: 10.6084/m9.figshare.5682610.v1
title: Histogram Inputs

description: Each column of this dataset represents the histogram of each image of the image dataset.
DOI: 10.6084/m9.figshare.5682658.v1
title: PCA dataset

description: Each column represents a vector of 3720 elements that were obtained from the calculation of 20 PCA, for each RGB color matrix , to the image dataset
DOI: 10.6084/m9.figshare.5682721.v1
title: YUV Histogram Inputs

description: Each column of this dataset represents the histogram of each image of the image dataset in te RGB colour space
DOI: 10.6084/m9.figshare.5270926.v3
title: Transcriptomic characterization of MRI contrast with focus on the T1-w/T2-w ratio in the cerebral cortex

description: Magnetic resonance (MR) images of the brain are of immense clinical and research utility. At the atomic and subatomic levels, the sources of MR signals are well understood. However, at the macromolecular scale, we lack a comprehensive understanding of what determines MR signal contrast. To address this gap, we used genome-wide measurements to correlate gene expression with MR signal intensity across the cerebral cortex in the Allen Human Brain Atlas. We focused on the ratio of T1-weighted and T2-weighted intensities (T1-w/T2-w) which is considered to be a useful proxy for myelin content. We found enrichment of positive correlations between myelin-associated genes and the ratio, supporting its use as a myelin marker. However, stronger correlations were observed in many other gene sets. For example, we observed opposing associations between proteasome subunits and genes linked to the production of endogenous formaldehyde (which cross-links protein to create larger molecules). Genome-wide, there was also an association with protein mass, with genes coding for heavier proteins expressed in regions with high T1-w/T2-w values. Oligodendrocyte gene markers were strongly correlated with the T1-w/T2-w ratio but this was not driven by myelin-associated genes, suggesting this signal is from non-myelinating satellite oligodendrocytes. Mitochondrial genes have the strongest relationship with high expression in regions with low T1-w/T2-w ratio. This may be due to the pH gradient in mitochondria as genes up-regulated by pH in the brain were also highly correlated with the ratio. While we corroborate associations with myelin and synaptic plasticity, differences in the T1-w/T2-w ratio across the cortex are more strongly linked to molecule size, oligodendrocyte markers, mitochondria, and pH. Using disease-associated gene lists, we observed an enrichment of negative T1-w/T2-w ratio correlations with human immunodeficiency virus (HIV) associated genes. Expanding our analysis to the whole brain results in strong positive T1-w/T2-w correlations for immune system, inflammatory disease, and microglia marker genes. In contrast, neuron markers and synaptic plasticity genes are enriched for negative correlations in the whole brain analysis. Lastly, our results vary little when our analysis is performed on T1-w or inverted T2-w intensities alone, possibly because the noise reduction properties of the ratio are not needed for postmortem brain scans. These results provide a molecular characterization of MR contrast that will aid interpretation of future MR studies of the brain.<br>
DOI: 10.48370/ofd/4m2jem/gj7wt5
title: Exobasidium sundstroemii Nannf. F-1741 (4).tif

description: :unav
DOI: 10.48370/ofd/4m2jem/ohsgoi
title: Exobasidium sundstroemii Nannf. F-1741.tif

description: :unav
DOI: 10.6084/m9.figshare.5686990.v2
title: ADK Long-term Dataset - Harmonized

description: Long-term dataset of lake biology and chemistry from 28 lakes in the Adirondack Park, northern New York State. Includes standard limnological parameters (secchi, temp, dissolved oxygen), baseline chemistry (pH, phosphorous, nitrogen, sulfate, nitrate, acid neutralizing capacity, among others), biological organism observations (phytoplankton, zooplankton). Originally collected to examine the long-term recovery of lakes and their biota from acidification.<br><br>Includes only harmonized data for distribution. <br>
DOI: 10.6084/m9.figshare.5686990.v1
title: ADK Long-term Dataset - Harmonized

description: Long-term dataset of lake biology and chemistry from 28 lakes in the Adirondack Park, northern New York State. Includes standard limnological parameters (secchi, temp, dissolved oxygen), baseline chemistry (pH, phosphorous, nitrogen, sulfate, nitrate, acid neutralizing capacity, among others), biological organism observations (phytoplankton, zooplankton). Originally collected to examine the long-term recovery of lakes and their biota from acidification.<br><br>Includes only harmonized data for distribution. <br>
DOI: 10.6084/m9.figshare.5686987.v1
title: ADK Long-term data and code compilation

description: Long-term dataset of lake biology and chemistry from 28 lakes in the Adirondack Park, northern New York State. Includes standard limnological parameters (secchi, temp, dissolved oxygen), baseline chemistry (pH, phosphorous, nitrogen, sulfate, nitrate, acid neutralizing capacity, among others), biological organism observations (phytoplankton, zooplankton). Originally collected to examine the long-term recovery of lakes and their biota from acidification.<br><br>Includes raw data, processed data, and custom R code for dataset cleaning and harmonization. <br>
DOI: 10.48370/ofd/4m2jem/ih9xxw
title: Exobasidium sundstroemii Nannf. F-1741 (2).tif

description: :unav
DOI: 10.6084/m9.figshare.5002019.v3
title: Spore viability and segregant data from Kondrateva 2001 (and pdf of article).

description: Spore viability and segregant data from Kondrateva 2001
DOI: 10.48370/ofd/4m2jem/84pkqb
title: Exobasidium sundstroemii Nannf. F-1741 (3).tif

description: :unav
DOI: 10.48370/ofd/4m2jem
title: Exobasidium sundstroemii Nannf., 1741

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.5687083.v1
title: DATA PLOS.zip

description: Data set of the segmented trajectories exploited in the article DISENTANGLING AND MODELING INTERACTIONS IN FISH WITH BURST-AND-COAST SWIMMING REVEAL DISTINCT ALIGNMENT AND ATTRACTION BEHAVIORS by<br>Daniel S. Calovi, Alexandra Litchinko, Valentin Lecheval, Ugo Lopez, Alfonso Pérez Escudero, Hugues Chaté, Clément Sire, Guy Theraulaz<br><br>
DOI: 10.6084/m9.figshare.5500873.v1
title: Harland et al. in-situ measurements of wool fibre cortex

description: These data describe <i>in-situ</i> measurements of the cortical cell type distributions or cell lengths from confocal micrographs of merino wool fibres. The associated study, reported in the connected publication, used these data to test theories about the underlying mechanism of hair curvature in mammals. The study adhered fully to New Zealand ethics laws.<br>
DOI: 10.6084/m9.figshare.5687419.v1
title: Conformers of canonical 5'-deoxycytidylic acid molecule (dCMP) in continuum polarizable dielectric envoronment (IEFPCM water, ε = 78.39)

description: Supplementary materials to the paper<br>"Atomic charges for conformationally rich molecules<br>obtained through a modified principal component regression" by T. Yu. Nikolaienko, L. A. Bulavin
DOI: 10.6084/m9.figshare.5044627.v3
title: Heterogeneity, Contact Patterns and Modeling Options

description: A lecture on how heterogeneity in infectivity, susceptibility, and contact patterns affect the transmission dynamics and control of infectious diseases.
DOI: 10.5255/ukda-sn-855387
title: Sanitation, Microcredit and Awareness - A Qualitative Analysis, 2019-2021

description: This study aimed to complement a Randomized Controlled Trial (RCT) conducted by the Institute for Fiscal Studies from 2015 to 2017 exploring the impact of sanitation microloans in rural Maharashtra (Latur and Nanded districts), combined with information provision and awareness raising. One of the main findings of the RCT was that adding the awareness raising to offering the new sanitation microloan product led to lower sanitation uptake than providing sanitation microloans only, with one in five loan takers who received the awareness constructing toilets compared with one in two who did not receive the loan (Attanasio et al. 2018). The qualitative study undertaken by the French Institute of Pondicherry set out to solve this puzzling finding. Given the time lag between the implementation of interventions and our survey, reconstructing the processes of subscription to the sanitation loan, their conversion into toilets and the use of the toilets proved to be very challenging. In addition to the timing problem, there were two other issues: we had difficulty interviewing the staff of the microcredit organization and the NGO in charge of awareness-raising, even though the survey protocol had considered them to be key informants; the pandemic and lockdown forced us to concentrate data collection in the last three months of the research contract. Ultimately, our answer to the question posed in the terms of reference is necessarily incomplete. Our observations mainly (1) provide insight into the structural barriers to toilet uptake, then give some reasons that (2) explain the diversity of behaviours toward sanitation loans, and their conversion to toilets. Our understanding of the structural factors explaining the reluctance to build toilets, however, allows us to (3) make some general conclusions about the limitations of interventions based solely on credit provision and awareness raising.
DOI: 10.6084/m9.figshare.5695474.v1
title: input_figshare_proteomics_121217

description: Proteomic analysis of skeletal muscle specifc carnitine palmitoyltransferase 1b (Cpt1b) knockout mice<br>
DOI: 10.6084/m9.figshare.5697505.v1
title: Data sets for "Nouns slow down speech: evidence from structurally and culturally diverse languages"

description: This item contains data tables for the study "Nouns slow down speech: evidence from structurally and culturally diverse languages" by Frank Seifart, Jan Strunk, Swintha Danielsen, Iren Hartmann, Brigitte Pakendorf, Søren Wichmann, Alena Witzlack-Makarevich, Nivja de Jong, and Balthasar Bickel.<br>
DOI: 10.6084/m9.figshare.5624809.v3
title: II.8" - Agrogenom clade-specific genes

description: Sets of clade-specific genes derived from the ancestral genome gene content estimations in Agrogenom database.<br>Procedure for detection of clade-specific genes from phylogenetic profiles:Clade-specific genes were defined as genes gained (or lost) by the clade ancestor and conserved (not re-gained) in all clade members since. We first identified genes marked by gain/loss events in the genome of a clade ancestor. Then, we identified clade-specific genes by searching for contrasting patterns in the phylogenetic profile of the presence or absence of each gained/lost gene. These profiles were established from the scenarios of orthologous subfamily evolution (see above and Supplementary Text, section 3, step 6). A background clade was chosen as the one corresponding to the next higher taxonomic unit (genus, species complex, etc.) in which the focal (foreground) clade was nested. Contrast was initially defined between the foreground and background clades, where foreground genomes had a consistently opposite pattern to that of genomes in the background clade. However, possible subsequent transfer or loss events in the background clade can blur the contrasting pattern in phylogenetic profiles. Clade-specific genotypes were thus identified using a relaxed definition of clade specificity, i.e. where the presence/absence contrast could be incomplete, with up to two genomes in the background clade sharing the foreground state.<br>
DOI: 10.6084/m9.figshare.5624809.v2
title: II.8" - Agrogenom clade-specific genes

description: Sets of clade-specific genes derived from the ancestral genome gene content estimations in Agrogenom database.<br>Procedure for detection of clade-specific genes from phylogenetic profiles:Clade-specific genes were defined as genes gained (or lost) by the clade ancestor and conserved (not re-gained) in all clade members since. We first identified genes marked by gain/loss events in the genome of a clade ancestor. Then, we identified clade-specific genes by searching for contrasting patterns in the phylogenetic profile of the presence or absence of each gained/lost gene. These profiles were established from the scenarios of orthologous subfamily evolution (see above and Supplementary Text, section 3, step 6). A background clade was chosen as the one corresponding to the next higher taxonomic unit (genus, species complex, etc.) in which the focal (foreground) clade was nested. Contrast was initially defined between the foreground and background clades, where foreground genomes had a consistently opposite pattern to that of genomes in the background clade. However, possible subsequent transfer or loss events in the background clade can blur the contrasting pattern in phylogenetic profiles. Clade-specific genotypes were thus identified using a relaxed definition of clade specificity, i.e. where the presence/absence contrast could be incomplete, with up to two genomes in the background clade sharing the foreground state.<br>
DOI: 10.48370/ofd/j29jcr/r3evbw
title: Exobasidium sundstroemii Nannf. F-1740.tif

description: :unav
DOI: 10.6084/m9.figshare.5700712.v1
title: SP_sc_clusters_05.csv

description: O cluster e a renda média de todos os setores censitários de São Paulo
DOI: 10.48370/ofd/j29jcr
title: Exobasidium sundstroemii Nannf., 1740

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.5701006.v1
title: LAYER_MORADORES_DE_RUA_2014.zip

description: Shapefile contendo o mapeamento dos moradores de rua de São Paulo.
DOI: 10.6084/m9.figshare.5701054.v1
title: Human Stories Work for evaluating the DSA Framework

description: The folders contain the data collection from human participants who created social media stories so that the automated stories generated by the DSA could be evaluated.
DOI: 10.6084/m9.figshare.5705173.v2
title: Fig 2

description: Number of distinct authors who publish aLD research, number of authors who publish ALD research for the first time, and ratio of new and distinct authors.<br>Data for the article "Characterizing the Field of Atomic Layer Deposition: authors, topics, and collaborations"<br>
DOI: 10.6084/m9.figshare.5687548.v1
title: Badges for sharing data and code at Biostatistics - an observational study

description: This fileset contains the anonymised data and code for the study: Badges for sharing data and code at <i>Biostatistics </i>- an observational study. This article is currently under peer-review at F1000Research. It has been accepted as a pre-publication. <br>The data is saved in rdata format and the code was written in Rmarkdown. WinBUGS (version 1.3.4) was also used in the analysis.<br>
DOI: 10.6084/m9.figshare.5705275.v1
title: Wax Lake Delta Channel Data (Winter 2013-2014)

description: The 'RBR' MATLAB files are data from an RBRconcerto CTD with OBS. The data includes the conductivity, temperature, depth, and turbidity from the Wax Lake Delta from the winter of 2013-2014. <br>The ADCP MATLAB files are data from East (Location 2) and Main (Location 1) Passes covering the same period. These ADCPs were Teledyne RDI Workhorse Monitors. I have attached the commands used to program the ADCPs for this deployment.<br>Please see attached file (WLD_BC_settings_and_locations) for meta-data.
DOI: 10.6084/m9.figshare.5597971.v1
title: Data from: Settlement and post-settlement survival rates of the white seabream (Diplodus sargus) in the western Mediterranean Sea

description: The file includes the raw data analyed in the paper Settlement and post-settlement survival rates of the white seabream (Diplodus sargus) in the western Mediterranean Sea published in PLOS ONE<br>
DOI: 10.6084/m9.figshare.5702776.v1
title: Supplementary Info

description: Supplementary Information for our paper "Real-time search of all bacterial and viral genomic data"<br><br>https://www.biorxiv.org/content/early/2017/12/15/234955<br>
DOI: 10.6084/m9.figshare.5705641.v1
title: Cephalopod products

description: Raw sequences of cephalopod products for molecular traceability.<br>
DOI: 10.6084/m9.figshare.5706046.v1
title: MAC Sevo N2O Data Plos One.xlsx

description: Animals were initially anesthetized with SEVO in oxygen (O<sub>2</sub>) and exposed to an electrical current as supramaximal noxious stimulus in order to determine MAC<sub>SEVO</sub> (in duplicates). Thereafter, 70% N<sub>2</sub>O was added to the inspired gas and the MAC re-determined in the presence of N<sub>2</sub>O (MAC<sub>SN</sub>). A subgroup of sheep were anesthetized a second time with SEVO/N<sub>2</sub>O for re-determination of MAC<sub>SN</sub>, after which atipamezole (0.2 mg/kg, IV) was administered for MAC<sub>SNA</sub> determinations. Sheep were anesthetized a third time, initially with only SEVO/O<sub>2</sub> to re-determine MAC<sub>SEVO</sub>, after which atipamezole (0.2 mg/kg, IV) was administered for determination of MAC<sub>SA</sub>.
DOI: 10.6084/m9.figshare.5705146.v1
title: Fig 1

description: Number of papers and journals that publish ALD research, and percentage among SCIE papers and journals. Data for the article "Characterizing the Field of Atomic Layer Deposition: authors, topics, and collaborations"
DOI: 10.6084/m9.figshare.5709604.v1
title: multifractal code

description: the multifractal code<br>
DOI: 10.6084/m9.figshare.5451379.v2
title: Statistical supplement to: Biomechanics of the peafowl’s crest: a potential mechanosensory role for feathers during social displays

description: Data and figures on peafowl crest feather vibration and mechanical properties. This fileset includes the data, R scripts, and figure files necessary to reproduce the figures and analysis.
DOI: 10.6084/m9.figshare.5451379.v1
title: Statistical supplement to: Biomechanics of the peafowl’s crest: a potential mechanosensory role for feathers during social displays

description: Data and figures on peafowl crest feather vibration and mechanical properties. This fileset includes the data, R scripts, and figure files necessary to reproduce the figures and analysis.
DOI: 10.6084/m9.figshare.5693107.v5
title: Image

description: Image<br>
DOI: 10.6084/m9.figshare.5514325.v2
title: Bacterial glycogen metabolism in the vagina - Work discussion VU september 2017

description: Presentation on the role of bacterial glycogen metabolism in the vagina. This is my work discussion at the Free University of Amsterdam (11-9-2017) discussing the background of my project, ongoing experiments and plans for the future.
DOI: 10.6084/m9.figshare.5718286.v1
title: Data to test figshare with website

description: Data to test website integration with phase field website<br>
DOI: 10.6084/m9.figshare.5722342.v1
title: D-Leaf dataset

description: This is the dataset used for CNN learning in D-Leaf.
DOI: 10.6084/m9.figshare.5722432.v1
title: Common Redstart counts in Switzerland (with covariates)

description: Counts of the Common Redstart (Phoenicurus phoenicurus) from the Swiss Breeding Bird Atlas 1993-1996 (Schmid et al. 1998), where 2,716 one km squares were surveyed three times during 15 April - 30 June. Covariates values for the km squares are also included.<br>
DOI: 10.6084/m9.figshare.3761562.v567
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v566
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v569
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v568
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.5722540.v1
title: Word files with important information

description: Word files describing timelapses<br>
DOI: 10.6084/m9.figshare.5722549.v2
title: Timelapse 2 - Maximum intensity projections

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5722549.v1
title: Timelapse two - Maximum intensity projections

description: See accompanying word documents
DOI: 10.6084/m9.figshare.3761562.v571
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v570
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v573
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.48370/ofd/9km0jb/y242q5
title: Exobasidium sydowianum Nannf F-3691.tif

description: :unav
DOI: 10.6084/m9.figshare.3761562.v572
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.48370/ofd/9km0jb
title: Exobasidium sydowianum Nannf., 3691

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.5722954.v4
title: Timelapse 3 - raw confocal files 1

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5722954.v3
title: Timelapse 3 - raw confocal files

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5722882.v3
title: Timelapse 2 - raw confocal files

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5722882.v2
title: Timelapse 1 - raw confocal files

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5723110.v4
title: Timelapse 3 - raw confocal files 2

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5723110.v3
title: Timelapse 3 - raw confocal files 2

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5725972.v1
title: Timelapse 3 - raw confocal files 3

description: See accompanying word documents<br><br>
DOI: 10.6084/m9.figshare.5726980.v1
title: Timelapse 4 - Maximum intensity projections

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5727090.v1
title: Timelapse 8 - Maximum intensity projections - bleach corrected

description: See accompanying word documents
DOI: 10.6084/m9.figshare.5729064.v2
title: Original dataset

description: The original dataset.
DOI: 10.6084/m9.figshare.5509465.v1
title: Assemblies of icefishes

description: File Family Speciesfish_57.scf.fasta.gz Eleginopsidae Eleginops maclovinusfish_58.scf.fasta.gz Nototheniidae Patagonotothen guntherifish_59.scf.fasta.gz Nototheniidae Trematomus newnesifish_60.scf.fasta.gz Nototheniidae Pleuragramma antarcticumfish_62.scf.fasta.gz Artedidraconidae Artedidraco skottsbergifish_63.scf.fasta.gz Harpagiferidae Harpagifer kerguelensisfish_64.scf.fasta.gz Bathydraconidae Gymnodraco acuticeps
DOI: 10.6084/m9.figshare.5160622.v1
title: Appendix 3

description: Examples of poor practice in conflict of interest disclosures
DOI: 10.6084/m9.figshare.5160592.v1
title: Appendix 4

description: Spreadsheets detailing our quantitative analyses