cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20417838.v1
title: Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid

description: Background The merging of two diverged genomes can result in hybrid offspring that phenotypically differ greatly from both parents. In plants, interspecific hybridization plays important roles in evolution and speciation. In addition, many agricultural and horticultural species are derived from interspecific hybridization. However, the detailed mechanisms responsible for non-additive phenotypic novelty in hybrids remain elusive. Results In an interspecific hybrid between <em>Arabidopsis thaliana</em> and <em>A. lyrata</em>, the vast majority of genes that become upregulated or downregulated relative to the parents originate from <em>A. thaliana</em>. Among all differentially expressed <em>A. thaliana</em> genes, the majority is downregulated in the hybrid. To understand why parental origin affects gene expression in this system, we compare chromatin packing patterns and epigenomic landscapes in the hybrid and parents. We find that the chromatin of <em>A. thaliana</em>, but not that of <em>A. lyrata</em>, becomes more compact in the hybrid. Parental patterns of DNA methylation and H3K27me3 deposition are mostly unaltered in the hybrid, with the exception of higher CHH DNA methylation in transposon-rich regions. However, <em>A. thaliana</em> genes enriched for the H3K27me3 mark are particularly likely to differ in expression between the hybrid and parent. Conclusions It has long been suspected that genome-scale properties cause the differential responses of genes from one or the other parent to hybridization. Our work links global chromatin compactness and H3K27me3 histone modification to global differences in gene expression in an interspecific <em>Arabidopsis</em> hybrid. <br> <br> Here normalized Hi-C matrices associated with this study can be downloaded.
DOI: 10.6084/m9.figshare.20417871
title: Nghiên cứu các yếu tố ảnh hưởng tới quyết định mua xe ô tô điện của người tiêu dùng Việt Nam (Responses) (2).csv

description: Nghiên cứu các yếu tố ảnh hưởng tới quyết định mua xe ô tô điện của người tiêu dùng Việt Nam
DOI: 10.6084/m9.figshare.20417892
title: Untitled Item

description: dataset
DOI: 10.6084/m9.figshare.20417892.v1
title: Untitled Item

description: dataset
DOI: 10.11588/data/plrqcz
title: User perspectives and preferences on a novel TB LAM diagnostic (Fujifilm SILVAMP TB LAM) – a qualitative study in Malawi and Zambia [data]

description: This data set supports the findings of the FujiLAM qualitative study published in PLOS Global Public Health (Titel:User perspectives and preferences on a novel TB LAM diagnostic (Fujifilm SILVAMP TB LAM) – a qualitative study in Malawi and Zambia). The repository contains our de-identified data extracts of our study transcripts after the initial coding step. The analysis memos describe the early phase of analysis after completing the coding process and creating data extracts.
DOI: 10.5258/soton/d1192
title: Dataset to support the Southampton Doctoral thesis entitled 'Novel approaches to discovering inhibitors of essential bacterial enzymes'

description: Biochemical data collected in support of thesis entitled 'Novel Approaches to Discovering Inhibitors of Essential Bacterial Enzymes'. Comprises: - Melting analysis of truncated tRNA with MBG1 (Figure 2.5.2) - Obtained using a Lightcycler 1.5, see methods 9.4.7. Date collected 19-09-16 - Melting analysis of tRNALeuUAG with MBG1 (Figure 3.4.2) - Obtained using a BioRad CFX touch, see methods 9.5.8. Date collected 02-08-18 - Optimization of DH and MBG1 concentrations (Figure 3.4.4) - Obtained using a BMG plate reader, see methods 9.5.10. Date collected 20-11-18 - Optimized time course (Figure 4.2.2) - Obtained using a BMG plate reader, see methods 9.6.2. Date collected 12-06-17 - Km of SAM (Figure 4.2.4) - Obtained using a BMG plate reader, see methods 9.6.5. Date collected 28-11-18 - Inhibitor Assay screen (Figure 4.4.4) - Obtained using a BMG plate reader, see methods 9.6.5. Date collected 10-12-18 - HPLC validation (Figure 4.3.7) -See methods 9.6.3. Date collected 11-12-18
DOI: 10.5281/zenodo.6948581
title: MELLODDY TUNER release v3 public data

description: A public dataset from ChEMBL (v25) for MELLODDY TUNER release v3. Data extracted from ChEMBL (LICENSE attached), and processed with https://github.com/melloddy/MELLODDY-TUNER release v3. Data can be used for technical tests, template for your own dataset and machine learning with SparseChem (https://github.com/melloddy/SparseChem).
DOI: 10.5281/zenodo.6948580
title: MELLODDY TUNER release v3 public data

description: A public dataset from ChEMBL (v25) for MELLODDY TUNER release v3. Data extracted from ChEMBL (LICENSE attached), and processed with https://github.com/melloddy/MELLODDY-TUNER release v3. Data can be used for technical tests, template for your own dataset and machine learning with SparseChem (https://github.com/melloddy/SparseChem).
DOI: 10.34740/kaggle/dsv/4019162
title: AutoXGB
DOI: 10.6084/m9.figshare.20416593
title: Wolfberry genomes and the evolution of Lycium (Solanaceae)

description: Wolfberry <em>Lycium</em>, an economically important genus of the Solanaceae family, contains approximately 80 species and shows a fragmented distribution pattern among the Northern and Southern Hemispheres. Although several herbaceous species of Solanaceae have been subjected to genome sequencing, thus far, no genome sequences of woody representatives have been available. Here, we sequenced the genomes of <em>Lycium barbarum</em>. Integration with other genomes provides clear evidence supporting a whole-genome triplication (WGT) event shared by all hitherto sequenced solanaceous plants, which occurred shortly after the divergence of Solanaceae and Convolvulaceae.
DOI: 10.34740/kaggle/dsv/4019156
title: LUFlow Network Intrusion Detection Data Set
DOI: 10.5281/zenodo.6951364
title: Basilisk dataset

description: This Basilisk dataset of the Phase inversion benchmark contains the data for both Case A and Case B and different grid resolutions. The results with Manifold Death (https://doi.org/10.1016/j.jcp.2022.111468) and without consist of: The raw data file (log.dat) with kinetic and potential energy, enstrophy, mass, dissipation, interfacial area. Statistics of droplets at some time steps (droplets_stats folders) The Basilisk source code Some scripts for post-processing purposes.
DOI: 10.5281/zenodo.6951363
title: Basilisk dataset

description: This Basilisk dataset of the Phase inversion benchmark contains the data for both Case A and Case B and different grid resolutions. The results with Manifold Death (https://doi.org/10.1016/j.jcp.2022.111468) and without consist of: The raw data file (log.dat) with kinetic and potential energy, enstrophy, mass, dissipation, interfacial area. Statistics of droplets at some time steps (droplets_stats folders) The Basilisk source code Some scripts for post-processing purposes.
DOI: 10.5281/zenodo.6951585
title: Data and Code for "Early complications after mild to moderate ischemic stroke and their impact on 3-months outcome: The prospective Stroke Unit Plus Cohort Study"

description: This repository consists of the data and code for the publication "Early complications after mild to moderate ischemic stroke and their impact on 3-months outcome: The prospective Stroke Unit Plus Cohort Study"<br> <br> - Analysis code:<br> - Analysis.R<br> - Functions.R - Data:<br> - AnalysisSet in .Rdata, .csv, and .xlsx formats<br> <br> - Variable codebook in .xlsx format Responsibility for the upload lies with Prof. Jan Sobesky, e-mail: j.sobesky@ak-neuss.de<br> For inquiries regarding the data please contact Dr. Vince Madai, e-mail: vince_istvan.madai@bih-charite.de
DOI: 10.5281/zenodo.6951584
title: Data and Code for "Early complications after mild to moderate ischemic stroke and their impact on 3-months outcome: The prospective Stroke Unit Plus Cohort Study"

description: This repository consists of the data and code for the publication "Early complications after mild to moderate ischemic stroke and their impact on 3-months outcome: The prospective Stroke Unit Plus Cohort Study"<br> <br> - Analysis code:<br> - Analysis.R<br> - Functions.R - Data:<br> - AnalysisSet in .Rdata, .csv, and .xlsx formats<br> <br> - Variable codebook in .xlsx format Responsibility for the upload lies with Prof. Jan Sobesky, e-mail: j.sobesky@ak-neuss.de<br> For inquiries regarding the data please contact Dr. Vince Madai, e-mail: vince_istvan.madai@bih-charite.de
DOI: 10.25578/kscrga/edtt7c
title: Pre-defect_HRpQCT_DICOM.zip

description: dicoms in HRpQCT
DOI: 10.25578/kscrga/nshvos
title: Post-defect_Segmentation_DICOM.zip

description: dicoms in binary of our segmentations after defect and resection of the endplates and realigned on the HRpQCT scan
DOI: 10.25578/kscrga/oyfcng
title: Digital Image Correlation.zip

description: Strain field measurements
DOI: 10.25578/kscrga/wyddso
title: Readme.pdf

description: :unav
DOI: 10.25578/kscrga/zhxvgh
title: ExperimentalData.tab

description: Experimental data
DOI: 10.25578/kscrga/bgsa1g
title: Readme.pdf

description: :unav
DOI: 10.25578/kscrga/1mplfm
title: Load_Displacement_Experiment_Data.xlsx

description: Experimental data
DOI: 10.5281/zenodo.6951581
title: Evaluation of the local sea-level budget at tide gauges since 1958

description: ### Data supplement for 'Evaluation of the local sea-level budget at tide gauges since 1958' <br> Authors: Jinping Wang, John A. Church, Xuebin Zhang, Jonathan M. Gregory, Laure Zanna and Xianyao Chen Created 9/5/2020<br> Please email wangjinping@ouc.edu for questions. ----------------------------------------------------------------------------------------------------<br> ### PLEASE CITE THE APPROPRIATE PAPERS WHEN USING THIS DATA ###<br> Please cite 'Evaluation of the local sea-level budget at tide gauges since 1958' when using this data set.<br> Our results heavily relies on previous work, and please acknowledge the previous work by citing the original sources of the data.<br> The Data Availability Statement section of 'Evaluation of the local sea-level budget at tide gauges since 1958' contains the full list of sources of all the original data. ----------------------------------------------------------------------------------------------------<br> This data supplement contains the following files: separate_components_rsl.mat <br> Spatial patterns of relative sea level trend (mm/yr) are provided for individual component. lon = longitude<br> lat = latitude<br> sdsl = sterodynamic sea level<br> barystatic_grd = the sum of all barystatic-GRD fingerprints<br> glacier = glacier contribution including charted and uncharted glaciers<br> ice_sheet = the sum of Greenland and Antarctic ice sheets<br> gia = glacial isostatic adjustment<br> tws = terrestrial water storage<br> sum = the sum of all contributions <br> GMSL.mat<br> Global mean time series of sea level and each components (mm). The variable names are the same with those in separate_components_rsl.mat <br> recons_mean = the ensemble mean of GMSL reconstructions (including Church & White, 2011; Dangendorf et al., 2019; Frederikse et al., 2020; Hay et al., 2015) <br> components_TG_locations.mat<br> All tide gauge observations and the individual contribution (mmm/yr). The variable names are the same with those in separate_components_rsl.mat <br> tgobs = tide gauge observations<br> tgobs_ovlm = tide gauge observations with other VLM correction applied <br> VLM_components.mat<br> VLM estimate and its individual components (mm/yr). vlm_total = total VLM<br> vlm_bgrd = barystatic-GRD VLM component<br> vlm_gia = GIA-related VLM component<br> vlm_other = other local VLM component vlm_total_uncertianty90 = 90% confidence level for total VLM<br> vlm_bgrd = 90% confidence level for barystatic-GRD VLM component<br> vlm_gia = 90% confidence level for GIA-related VLM component<br> vlm_other = 90% confidence level for other local VLM component
DOI: 10.5281/zenodo.5554493
title: Evaluation of the local sea-level budget at tide gauges since 1958

description: ### Data supplement for 'Evaluation of the local sea-level budget at tide gauges since 1958' <br> Authors: Jinping Wang, John A. Church, Xuebin Zhang, Jonathan M. Gregory, Laure Zanna and Xianyao Chen Created 9/5/2020<br> Please email wangjinping@ouc.edu for questions. ----------------------------------------------------------------------------------------------------<br> ### PLEASE CITE THE APPROPRIATE PAPERS WHEN USING THIS DATA ###<br> Please cite 'Evaluation of the local sea-level budget at tide gauges since 1958' when using this data set.<br> Our results heavily relies on previous work, and please acknowledge the previous work by citing the original sources of the data.<br> The Data Availability Statement section of 'Evaluation of the local sea-level budget at tide gauges since 1958' contains the full list of sources of all the original data. ----------------------------------------------------------------------------------------------------<br> This data supplement contains the following files: separate_components_rsl.mat <br> Spatial patterns of relative sea level trend (mm/yr) are provided for individual component. lon = longitude<br> lat = latitude<br> sdsl = sterodynamic sea level<br> barystatic_grd = the sum of all barystatic-GRD fingerprints<br> glacier = glacier contribution including charted and uncharted glaciers<br> ice_sheet = the sum of Greenland and Antarctic ice sheets<br> gia = glacial isostatic adjustment<br> tws = terrestrial water storage<br> sum = the sum of all contributions <br> GMSL.mat<br> Global mean time series of sea level and each components (mm). The variable names are the same with those in separate_components_rsl.mat <br> recons_mean = the ensemble mean of GMSL reconstructions (including Church & White, 2011; Dangendorf et al., 2019; Frederikse et al., 2020; Hay et al., 2015) <br> components_TG_locations.mat<br> All tide gauge observations and the individual contribution (mmm/yr). The variable names are the same with those in separate_components_rsl.mat <br> tgobs = tide gauge observations<br> tgobs_ovlm = tide gauge observations with other VLM correction applied <br> VLM_components.mat<br> VLM estimate and its individual components (mm/yr). vlm_total = total VLM<br> vlm_bgrd = barystatic-GRD VLM component<br> vlm_gia = GIA-related VLM component<br> vlm_other = other local VLM component vlm_total_uncertianty90 = 90% confidence level for total VLM<br> vlm_bgrd = 90% confidence level for barystatic-GRD VLM component<br> vlm_gia = 90% confidence level for GIA-related VLM component<br> vlm_other = 90% confidence level for other local VLM component
DOI: 10.5281/zenodo.6951623
title: Biodiversity Metadata Ground Truth

description: This repository contains ground truth data for 18 datasets that are collected from 7 Biodiversity data portals. We manually annotated the metadata fields according to the Biodiversity Metadata Ontology (BMO) ontology. This ground truth is used to evaluate the developed Meta2KG approach that is used to transform raw metadata filed into RDF.
DOI: 10.5281/zenodo.6951622
title: Biodiversity Metadata Ground Truth

description: This repository contains ground truth data for 18 datasets that are collected from 7 Biodiversity data portals. We manually annotated the metadata fields according to the Biodiversity Metadata Ontology (BMO) ontology. This ground truth is used to evaluate the developed Meta2KG approach that is used to transform raw metadata filed into RDF.
DOI: 10.5281/zenodo.5902086
title: Data from: Experimental Investigation of Efficiency and Deposit Process Temperature during Multi-Layer Friction Surfacing

description: This dataset contains the data for the publication "Experimental Investigation of Efficiency and Deposit Process Temperature during Multi-Layer Friction Surfacing"
DOI: 10.5281/zenodo.5902085
title: Data from: Experimental Investigation of Efficiency and Deposit Process Temperature during Multi-Layer Friction Surfacing

description: This dataset contains the data for the publication "Experimental Investigation of Efficiency and Deposit Process Temperature during Multi-Layer Friction Surfacing"
DOI: 10.5281/zenodo.6727646
title: Temperature during seed maturation influences timing of bud burst in seedlings and saplings of Prunus padus.

description: We tested whether temperature during seed maturation in a broadleaved woody perennial may influence the phenological performance of seedlings through an epigenetic memory. We performed two controlled crosses of <em>Prunus padus</em> in two subsequent years (2015 and 2016). Clonal mother shrubs were subjected to a cold and a warm condition during seed maturation. In the first year after germination the seedlings from the warm seed maturation condition burst their buds earlier compared to the cold condition seedlings, whereas in the second and third year, these seedlings burst their buds later. A temporary maternal effect may have advanced bud burst for the warm condition seedlings in the first year, whereas a delay of bud burst in the following years suggest a transgenerational epigentic memory, putatively expressing a stress reaction upon the suboptimal elevated temperature during seed maturation. In the spring of 2020, seedlings were divided in a cold and a warm treatment. The warm spring treatment enlarged the difference in timing of bud burst between the cold and warm seed maturation conditions in both crosses, suggesting that the epigenetic memory is more strongly expressed in a warmer spring environment. The timing of the autumnal leaf senescence in the seedlings was not influenced by the temperature during seed maturation in all observation years, suggesting that autumnal senescence is less (epi)genetically determined in comparison to bud burst, and more sensitive to ambient temperatures.
DOI: 10.5281/zenodo.6727645
title: Temperature during seed maturation influences timing of bud burst in seedlings and saplings of Prunus padus.

description: We tested whether temperature during seed maturation in a broadleaved woody perennial may influence the phenological performance of seedlings through an epigenetic memory. We performed two controlled crosses of <em>Prunus padus</em> in two subsequent years (2015 and 2016). Clonal mother shrubs were subjected to a cold and a warm condition during seed maturation. In the first year after germination the seedlings from the warm seed maturation condition burst their buds earlier compared to the cold condition seedlings, whereas in the second and third year, these seedlings burst their buds later. A temporary maternal effect may have advanced bud burst for the warm condition seedlings in the first year, whereas a delay of bud burst in the following years suggest a transgenerational epigentic memory, putatively expressing a stress reaction upon the suboptimal elevated temperature during seed maturation. In the spring of 2020, seedlings were divided in a cold and a warm treatment. The warm spring treatment enlarged the difference in timing of bud burst between the cold and warm seed maturation conditions in both crosses, suggesting that the epigenetic memory is more strongly expressed in a warmer spring environment. The timing of the autumnal leaf senescence in the seedlings was not influenced by the temperature during seed maturation in all observation years, suggesting that autumnal senescence is less (epi)genetically determined in comparison to bud burst, and more sensitive to ambient temperatures.
DOI: 10.5281/zenodo.6141015
title: Stimulation, reduction and compensation growth, and variable phenological responses to spring and/or summer-autumn warming in Corylus taxa and Cornus sanguinea L.

description: Two datasets containing data from three Corylus taxa (Corylus avellana, Corylus maxima and intermediate forms) and from Cornus sanguinea. Plants, in a common garden setting, were subjected to a periodic warming experiment in a greenhouse environment in 2018.
DOI: 10.5281/zenodo.6141014
title: Stimulation, reduction and compensation growth, and variable phenological responses to spring and/or summer-autumn warming in Corylus taxa and Cornus sanguinea L.

description: Two datasets containing data from three Corylus taxa (Corylus avellana, Corylus maxima and intermediate forms) and from Cornus sanguinea. Plants, in a common garden setting, were subjected to a periodic warming experiment in a greenhouse environment in 2018.
DOI: 10.5281/zenodo.6948519
title: Biodiversity Metadata Ontology (BMO)

description: The Biodiversity Metadata Ontology (BMO) is an ontology that describes the underlying shared scheme of the metadata of seven Biodiversity data repositories. Such repositories include idiv, data.world, BEF-China, the Biodiversity Expolatores (BExIS), PANGEAE, Dryad, and gbif. We have manually collected metadata from them and analyzied such metadata. We have generated BMO using the MakeSchema that is based on the python rdflib tool. We export the BMO to Turtle, RDF/XML, and n-triples format.
DOI: 10.5281/zenodo.6948518
title: Biodiversity Metadata Ontology (BMO)

description: The Biodiversity Metadata Ontology (BMO) is an ontology that describes the underlying shared scheme of the metadata of seven Biodiversity data repositories. Such repositories include idiv, data.world, BEF-China, the Biodiversity Expolatores (BExIS), PANGEAE, Dryad, and gbif. We have manually collected metadata from them and analyzied such metadata. We have generated BMO using the MakeSchema that is based on the python rdflib tool. We export the BMO to Turtle, RDF/XML, and n-triples format.
DOI: 10.6084/m9.figshare.19706704.v1
title: Data Set S1. Sediment data at Van Buren and Little Rock.xlsx

description: This dataset records the sediment data at Van Buren and Little Rock in the Lower Arkansas River. The sediment data were compiled from the USGS and spans from 1945 to 2019.
DOI: 10.6084/m9.figshare.20417895
title: Thy-Wise: An interpretable machine learning model for the evaluation of thyroid nodules

description: Data Description:<br> The database contains ultrasound images of thyroid nodules that were finally included in the study. As the aim of this study was to identify nodules as benign or malignant, all nodules were placed in two zip files according to their pathological nature: benign_after.zip and malignant_after.zip.<br> After unzipping the zip package and opening the folder, you can see several folders named by "pathological nature + number", each folder corresponds to a thyroid nodule and contains its ultrasound images collected in a single examination.<br> <br> Ethical Approval:<br> This retrospective study was approved by the institutional Ethics Committees of the First Affiliated Hospital of Jinan University, and the requirement for informed consent was waived.<br> <br> Sensitive Information Protection:<br> All sensitive information contained in the image, including the patient's personal information, the hospital visited, and the time of the visit, has been removed using the CV2 toolkit from python for the purpose of anonymization. <br> <br> Processing pipeline and analysis steps:<br> All the annotations in the images and clips were eliminated before review. US images were evaluated in a blinded fashion, with no US or pathology reports available, by two board-certified radiologists (with more than 10 years of experience in thyroid sonography) independently. <br> Nodule size was measured as the maximal dimension on US images and the five gray-scale US categories were reviewed according to the ACR TI-RADS lexicon (5): composition, echogenicity, shape, margin, and echogenic foci. In the ACR TI-RADS, the TI-RADS risk level for nodules was determined by the total score of the five US categories, ranging from TR1 (benign) to TR5 (highly suspicious).
DOI: 10.5281/zenodo.6948573
title: Biodiversity Metadata Knowledge Graph (BMKG)

description: Biodiversity Metadata Knowledge Graph (BMKG) has the Biodiversity Metadata Ontology (BMO) as its underlying schema. BMKG has 18 datasets instances. The BMKG is automatically generated using an embedding-based technique under the scope of Meta2KG project.