cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/98t8nxgw5s
title: Data of genetic variability and working steps of doubled haploid production in tropical maize

description: Phenotype-DH.txt This dataset comprised haploid, diploid and inhibited seeds obtained from the crossing of five sources of tropical germplasm in F1 and F2 generations with the tropicalized haploid inducer LI-ESALQ. Our main goals were to compare the effect of F1 and F2 generations on DH production in tropical germplasm, evaluating the R1-navajo expression in seeds, the working steps of the methodology, and the genetic variability of the DH lines obtained. Phenotypic data present five source germplasm, two generations, three blocks, three classes (haploid, diploid and inhibited), a total of seeds harvested in each ear and the correspondent class value; and frequency. Genotype-DH.txt This dataset comprised D0 lines obtained in doubled haploid methodology. The 173 DH lines and 5604 SNPs were used to evaluate the genetic variability, population structure and kinship of the DH lines obtained in each generation. The SNP markers were filtered for missing data = 5% and for minor allele frequency = 5%. All heterozygous loci that remained in the data were considered as missing values and were imputed based on the mean of SNP. The type of matrix output produced was "012", coded as 0 to AA, 1 to Aa and 2 to aa. The residual heterozygosity was considered as a missing value because of the presence of chimerism in D0 cells after artificial chromosome doubling during DH in maize. The procedures were carried out by the raw.data function of snpReady package of R software.
DOI: 10.17632/v6h4tygkvc
title: Integral boundary condition paper data

description: The dataset contains codes for the implementation of the Lagrange multiplier method and our proposed new method for solving the Poisson equation with a special integral boundary condition.
DOI: 10.6084/m9.figshare.29104940.v1
title: [1-<sup>11</sup>C]glycine ([1-<sup>11</sup>C]GLY)

description: Time List and Cassette Layout for the synthesis of Carbon-11 glycine (GLY)This time list for the synthesis of Carbon-11 glycine does <b>not</b> have a reformulation step.
DOI: 10.17632/374dykghbv
title: Data for: Achieving high critical current density in LLZO/MgO composite electrolytes
DOI: 10.17632/7mm7p49zc7
title: General Theory of Temporality

description: This paper proposes a fundamental reformulation of gravity and physical forces as manifestations of temporal gradients, rather than spatial curvature or classical fields. It introduces the concept of real time as a variable flow rate that governs all processes in the universe—from quantum events to cosmic dynamics. Gravity is reinterpreted as a pressure between zones of different temporal density, and black holes are reframed as regions of fully halted time. White holes, in this framework, act as sources of renewed reality, potentially explaining observed cosmic acceleration and the emergence of young hydrogen. The model unifies physical forces under a single principle—time—as the ultimate driver of nature, offering a simplified alternative to General Relativity and a new lens for integrating quantum theory.
DOI: 10.6084/m9.figshare.28381625.v1
title: Source data for genomic features of HeV RF02 and PkV RF02

description: Keynote files and source data for data visualisation of genomic features of two marine giant viruses HeV RF02 and PkV RF02.
DOI: 10.6084/m9.figshare.5982286.v1
title: Research Methods

description: Qualitative? Quantitative? Mixed? Research methods are the systematic tools used to conduct research. Basically, they are the rules researchers follow to collect information in order to seek an answer to their research question. In this session you will be briefly introduced to different research methodologies, and explore learning materials that will help you to design research projects, understand particular methods or identify a new method, and learn how to incorporate these into your own teaching, research, and writing. This workshop would suit those staff and researchers who want to refine or enhance their skills and those who are conducting or considering their own research. This session maps to the RDF’s sub domain of Knowledge base (A1) and Communication and dissemination (D2).
DOI: 10.6084/m9.figshare.6091007.v1
title: Texture Patch Dataset.zip

description: This study uses an in-house two-class dataset comprising 1000 texture images, 500 of which denote human skin texture and the rest represent non-skin textures with high degree of similarity to human skin. These skin texture images were taken by our research team using a DSLR camera to maintain the fine skin texture patterns. Images were captured from various ethnic groups and skin color tones to avoid biasness toward any ethnic groups or skin color. Since different human body parts have different skin texture characteristics, texture images in our dataset were collected from various body parts such as face, leg, core, arms with relatively equal amount of contribution in dataset. In order to better simulate the skin detection challenges in real world and improve the robustness and reliability of our experiments, skin texture images were collected in various scales, direction and lighting conditions. The remaining 500 texture images which denote non-skin textures with high degree of similarity to human skin were collected from various online image repositories. These images, represent the texture of wooden surfaces, sand and other objects such as rugs, animal furs and fabric which are highly similar to actual skin texture, color and hue. The dataset which prepared in this study simulates challenging real-world scenarios to evaluate and compare texture analysis techniques performance in challenging conditions. All texture patches were captured and stored in uncompressed Tagged Image File Format (TIFF) to avoid any alteration or compromise in actual texture patterns. Moreover, any kind of color alternation or image enhancement were avoided. All texture images were manually resized to 150x150 dimension to equalize the amount of contribution of each image in the model.
DOI: 10.6084/m9.figshare.9602999.v1
title: Questionnaire original data.xlsx

description: The qestionnaire original data hide the basic information of the participants and contain scale scoring data.
DOI: 10.17632/7btd42m2sc
title: Spanish Biomedical Corpus

description: Embeddings This repository contains the word embeddings generated from biomedical Spanish texts corpora. Corpus detail The corpus was gathered from Spanish biomedical texts from different multilingual biomedical sources: IBECS (Spanish Bibliographical Index in Health Sciences): corpus that collects scientific journals covering multiple fields in health sciences. Contains titles and abstracts from 168,198 records in English and Spanish. SciELO (Scientific Electronic Library Online): corpus gathers electronic publications of complete full-text articles from scientific journals of Latin America, South Africa, and Spain. Contains titles and abstracts from 161,710 records in English and Spanish. Pubmed: free search engine used to access the MedlineNLM (https://www.ncbi.nlm.nih.gov/pubmed/). Contains titles and abstracts from 127,619 records. MedlinePlus: corpus with health topics, drugs and supplements, laboratory test information, and medical encyclopedia texts contains 7,033 articles in English and Spanish. UFAL Medical Corpus is a collection of parallel corpora of medical and general domain texts. All corpus data files can be found in the next link: http://temu.bsc.es/mespen/ Pre-trained Models FastText We used the FastText (Bojanowski et al., 2016) implementation to training our word embeddings using the preprocessed Spanish Biomedical corpus (FastText-SBC). Moreover, we trained a concept embedding model replacing biomedical concepts in the Spanish Biomedical corpus with their unique SNOMED-CT Spanish Edition iden-tifier (SNOMED-SBC). We used the PyMedTer-mino library (Lamy et al., 2015) for concept indexing using full-text search and fuzzy search with threshold. Train Parameters Dimension = 300 epoch=10,20 min_count=20 neg=20 t=6e-5 thread=7 encoding='utf8' min subword-ngram = 3 max subword-ngram = 6 Links to the embeddings FastText-SBC, epoch 10 FastText-SBC, epoch 20 SNOMED-SBC
DOI: 10.6084/m9.figshare.16988320.v1
title: Supplementary Material for: Mannitol is comparable to hypertonic saline for raised intracranial pressure in Acute Liver Failure (MAHAL Study): A RCT

description: Background: Raised intracranial pressure due to cerebral edema (CE) is central to development of hepatic encephalopathy in ALF. Mannitol (MT) & Hypertonic saline (HS) has been shown to improve CE. We compared the efficacy & safety of the two modalities Methods: ALF with CE were prospectively randomized in an open study to receive either 5 ml/kg of either 3% HS, as continuous infusion; titrated every 6 hourly to achieve serum sodium of &lt;160(Group A; n=26) or 1 g/kg of 20% MN as a IV bolus, repeated every six hourly (Group B; n=25) in addition to standard ALF care. Primary end-point was reduction of intracranial pressure defined as optic nerve sheath diameter &lt;5mm and middle cerebral arterial pulsatility index (PI) &lt;1.2 at 12 hours. Results: Fifty-one patients with ALF, hepatitis E being commonest (33.3%), median jaundice to HE interval of 8(1-16) days, were randomized to HS (n=26) or MN (n=25). Baseline characteristics were comparable including King’s college criteria [&gt;2: 38.4% vs.40%]. Overall, 61.5% patients in HS and 56% in MN group showed reduction in ICP at 12 hr. (p=0.25). Rebound increase in ICP indices was noted in 5(20%) patients in MT and none in HS (p&lt;0.05) group. New onset acute kidney injury was commoner in MT than HS group. The ICU stay, and 28-day transplant free survival were not different between the groups. Conclusions: While both agents had comparable efficacy in reducing ICP and mortality in ALF patients was comparable, HS was significantly better in preventing reducing rebound CE with lower renal dysfunction.
DOI: 10.6084/m9.figshare.26826301.v1
title: Various pathogens have been sequenced by institutions within and outside Africa, with the data accessible through the Sequence Read Archive (SRA) of the NCBI from multiple African countries

description: Various pathogens have been sequenced by institutions within and outside Africa, with the data accessible through the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI) from multiple African countries
DOI: 10.17632/28s2bhdjfd
title: CBC Dataset

description: - About Dataset 
Safa S. Abdul-Jabbar, Alaa k. Farhan

- Context
This is the first Dataset for various ordinary patients in Iraq. The Dataset provides the patients’ Cell Blood Count test information that can be used to create a Hematology diagnosis/prediction system. Also, this Data was collected in 2022 from Al-Zahraa Al-Ahly Hospital. These data can be cleaned & analyzed using any programming language because it is provided in an excel file that can be accessed and manipulated easily. The user just needs to understand how rows and columns are arranged because the data was collected as images(CBC images) from the laboratories and then stored the extracted data in an excel file.
	Content
This Dataset contains 500 rows. For each row (patient information), there are 21 columns containing CBC test features that can be described as follows:
1.	ID: Patients Identifier
2.	WBC: White Blood Cell, Normal Ranges: 4.0 to 10.0, Unit: 10^9/L.
3.	LYMp: Lymphocytes percentage, which is a type of white blood cell, Normal Ranges: 20.0 to 40.0, Unit: %
4.	MIDp: Indicates the percentage combined value of the other types of white blood cells not classified as lymphocytes or granulocytes, Normal Ranges: 1.0 to 15.0, Unit: %
5.	NEUTp: Neutrophils are a type of white blood cell (leukocytes); neutrophils percentage, Normal Ranges: 50.0 to 70.0, Unit: %
6.	LYMn: Lymphocytes number are a type of white blood cell, Normal Ranges: 0.6 to 4.1, Unit: 10^9/L.
7.	MIDn:	Indicates the combined number of other white blood cells not classified as lymphocytes or granulocytes, Normal Ranges: 0.1 to 1.8, Unit: 10^9/L.
8.	NEUTn: Neutrophils Number, Normal Ranges: 2.0 to 7.8, Unit: 10^9/L.
9.	RBC: Red Blood Cell, Normal Ranges: 3.50 to 5.50, Unit: 10^12/L
10.	HGB: Hemoglobin, Normal Ranges: 11.0 to 16.0, Unit: g/dL 
11.	HCT: Hematocrit is the proportion, by volume, of the Blood that consists of red blood cells, Normal Ranges: 36.0 to 48.0, Unit: %
12.	MCV: Mean Corpuscular Volume, Normal Ranges: 80.0 to 99.0, Unit: fL 
13.	MCH: Mean Corpuscular Hemoglobin is the average amount of haemoglobin in the average red cell, Normal Ranges: 26.0 to 32.0, Unit: pg
14.	MCHC: Mean Corpuscular Hemoglobin Concentration, Normal Ranges: 32.0 to 36.0, Unit: g/dL
15.	RDWSD: Red Blood Cell Distribution Width, Normal Ranges: 37.0 to 54.0, Unit: fL
16.	RDWCV: Red blood cell distribution width, Normal Ranges: 11.5 to 14.5, Unit: %
17.	PLT: Platelet Count, Normal Ranges: 100 to 400, Unit: 10^9/L
18.	MPV: Mean Platelet Volume, Normal Ranges: 7.4 to 10.4, Unit: fL
19.	PDW: Red Cell Distribution Width, Normal Ranges: 10.0 to 17.0, Unit: %
20.	PCT: The level of Procalcitonin in the Blood, Normal Ranges: 0.10 to 0.28, Unit: %
21.	PLCR: Platelet Large Cell Ratio, Normal Ranges: 13.0 to 43.0, Unit: %
- Acknowledgements
We thank the entire Al-Zahraa Al-Ahly Hospital Hospital team, especially the hospital manager, for cooperating with us in collecting this data while maintaining patients' confidentiality.
DOI: 10.17632/w38d6vnhzn
title: No browsing, no donating： Impact of image emotion and color on browsing intention in online charitable fundraising

description: The file is the dataset for the manuscript entitled 'No browsing, no donating： Impact of image emotion and color on browsing intention in online charitable fundraising' by Zheng et al., including the data of three studies shown in the manuscript.Drawing on the theories of color psychology, schema inconsistency and sympathy, this study investigates how the image color of the victims affects donors’ attention.
DOI: 10.6084/m9.figshare.13083587.v1
title: Data from: An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis

description: These are the packaged data used in "An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis".<br>The packaged data contains 3 files:1. File "genotype.txt"<br>2. File "indiv_info.txt"<br>3. File "marker_info.txt"<br><br>If using these data package or part of it, please cite our published article.<br>For additional information, please contact: pitasudrajad@pertanian.go.id
DOI: 10.17632/fzv5ynzc89
title: Dataset of phenotyping recombinant inbred lines population of wheat under heat stress conditions  

description: The presented data included the phenotyping of parents and 249 RIL population of F8 and F9 generations derived from the cross between HUW510 and HD2808 wheat genotypes under timely and late sown conditions during the 2013-14 and 2014-15 crop seasons, respectively. A total of eight agronomic traits were subjected to phenotype and the heat susceptibility index (HSI) of these traits was estimated to identify the effect of heat stress on the parents and RIL population. The presented dataset could be utilized to understand the genetic basis for heat stress tolerance in wheat
DOI: 10.6084/m9.figshare.23650575.v5
title: LIANA+ Vignettes Data

description: Kuppe et al, 2022, Nature: Visium_19 slide, as modified and published at https://www.nature.com/articles/s41586-022-05060-x; https://cellxgene.cziscience.com/collections/8191c283-0816-424b-9b61-c3e1d6258a77Vicari et al., 2023, Nat Biotech: sma_V11L12-109_B1 (sma_deconv.h5ad, sma_msi.h5ad, sma_rna.h5ad); published at https://www.nature.com/articles/s41587-023-01937-y; modified from https://figshare.scilifelab.se/articles/dataset/Spatial_Multimodal_analysis_SMA_-_Mass_Spectrometry_Imaging_MSI_/22770161Farr et al., 2023, Biorxiv: metalinks.db - sqlite3 database converted from a neo4j knowledge graph generated via https://github.com/biocypher/metalinks<br>
DOI: 10.6084/m9.figshare.14957668.v1
title: LongTermPretreat_broad.csv from Transgenerational non-genetic inheritance has fitness costs and benefits under recurring stress in the clonal duckweed <i>Spirodela polyrhiza</i>

description: Although non-genetic inheritance is thought to play an important role in plant ecology and evolution, evidence for adaptive transgenerational plasticity is scarce. Here, we investigated the consequences of copper excess on offspring defences and fitness under recurring stress in the duckweed <i>Spirodela polyrhiza</i> across multiple asexual generations. Growing large monoclonal populations (greater than 10 000 individuals) for 30 generations under copper excess had negative fitness effects after short and no fitness effect after prolonged growth under recurring stress. These time-dependent growth rates were likely influenced by environment-induced transgenerational responses, as propagating plants as single descendants for 2 to 10 generations under copper excess had positive, negative or neutral effects on offspring fitness depending on the interval between initial and recurring stress (5 to 15 generations). Fitness benefits under recurring stress were independent of flavonoid accumulations, which in turn were associated with altered plant copper concentrations. Copper excess modified offspring fitness under recurring stress in a genotype-specific manner, and increasing the interval between initial and recurring stress reversed these genotype-specific fitness effects. Taken together, these data demonstrate time- and genotype-dependent adaptive and non-adaptive transgenerational responses under recurring stress, which suggests that non-genetic inheritance alters the evolutionary trajectory of clonal plant lineages in fluctuating environments.
DOI: 10.6084/m9.figshare.28369787.v2
title: Data for Elsden et al., 2025 submitted to JGR Space Physics: Theory and Modelling of Large Scale Plasmapause Surface Waves

description: Data files for reproducing figures pertaining to numerical simulations in the manuscript. These are IDL save files. Use restore,'fig4.sav' for example, to read the variables into an IDL session.
DOI: 10.6084/m9.figshare.c.3912868_d2.v1
title: Additional file 2: of Regulatory remodeling in the allo-tetraploid frog Xenopus laevis

description: Containing the number of experimentally defined regulatory regions (p300, H3K4me3, and DNAme-hypomethylated) along with the genomic coordinates of all of them. (XLS 5598 kb)
DOI: 10.6084/m9.figshare.12720989.v4
title: Data.zip

description: This comprehensive data set contains China's anthropogenic methane emissions from 13 inventories that are used in a paper published in ESSD (https://doi.org/10.5194/essd-2020-210). It includes one Excel file that includes annual total and sectoral emissions (in unit of Tg CH4 per year), and 28 TIF files for total and sectoral gridded emissions (in unit of g CH4 per square meters per year).
DOI: 10.6084/m9.figshare.23795943.v2
title: Global biogeography of N<sub>2</sub>-fixing microbes: <i> </i><i>nifH</i> amplicon database and analytics workflow

description: This figshare entry has the <i>nifH</i> ASV database described in Morando, Magasin et al. 2025. In this work we compiled published data for marine nitrogenase (<i>nifH</i>) amplicons that were sequenced on Illumina platforms, and ran the datasets through our DADA2 <i>nifH</i><i> </i>workflow. Briefly, the workflow entailed: detecting ASVs with a DADA2 pipeline customized for <i>nifH</i><i>;</i> quality filtering and annotating ASVs using resources maintained by the Zehr and Turk-Kubo labs at UC Santa Cruz; and co-locating the samples with environmental data from the Simons Collaborative Marine Atlas Project (CMAP).The <i>nifH</i> ASV database in the 2025 publication is nifH_ASV_database_v2.tgz. An earlier version of the database (v1) is described in the preprint. Future versions will appear in figshare as new amplicon datasets become available.Software used to create the <i>nifH</i> ASV database:nifH-ASV-workflow in GitHub. This provides an overview of the workflow, a map of all included samples, and the scripts used to generate the <i>nifH</i> ASV database.nifH_amplicons_DADA2 in GitHub. This contains our DADA2 pipeline which processed samples by study. Then ASVs across all studies were processed together by the workflow. The pipeline can be used with amplicon data for genes other than <i>nifH</i> by specifying the primers and changing one parameter for how DADA2 error models are created.<br>
DOI: 10.17632/h7y9jdmpxp
title: An abiotic source of Archean hydrogen peroxide and oxygen that pre-dates oxygenic photosynthesis

description: This dataset provides all the data and supplementary data for the paper titled "An abiotic source of Archean hydrogen peroxide and oxygen that pre-dates oxygenic photosynthesis".
He H.P., Wu X., Xian H.Y., Zhu J.X., Yang Y.P., Lv Y., Li Y.L, Konhauser K.O. An abiotic source of Archean hydrogen peroxide and oxygen that pre-dates oxygenic photosynthesis. Nature Communications 12, 6611 (2021). DOI: 10.1038/s41467-021-26916-2
DOI: 10.6084/m9.figshare.7171901.v1
title: Supplementary Material for: Different Chemotherapy Regimens in the Management of Advanced or Metastatic Urothelial Cancer: a Bayesian Network Meta-Analysis of Randomized Controlled Trials

description: <b><i>Background/Aims:</i></b> Urothelial cancer (UC) as a chemotherapy-sensitive tumor, has achieved remarkable progresses in therapeutic paradigm, particularly in the advanced/metastatic stages. However, both clinicians and patients are confused when it comes to choosing the optimal chemotherapy. Hence, this article was aimed to conduct a comprehensive comparison of different chemotherapy regimens for advanced or metastatic UC in terms of survival benefits or adverse events. <b><i>Methods:</i></b> The online databases PubMed, EMBASE and Web of Science were searched systematically and comprehensively for randomized controlled trials (RCTs) up to September 15, 2017. The pooled hazard ratios (HRs) or odds ratios (ORs) with 95% credible interval (CrI) were calculated by Markov chain Monte Carlo methods. The effectiveness and safety of included regimens were conducted to provide a hierarchy by means of rank probabilities with the help of “R-3.4.0” software and the “gemtc-0.8.2” package. The surface under the cumulative ranking curve (SUCRA) was also incorporated in our analysis for ranking the corresponding chemotherapy regimens. <b><i>Results:</i></b> Ten different chemotherapy regimens involved in this article were predominantly of trials in a first-line setting, and eight clinical outcomes were ultimately analyzed in this study. In terms of Overall response rate (ORR), Overall survival (OS) or Progression-free survival (PFS)/Time to progression (TTP), the rank probabilities and SUCRA indicated that Paclitaxel/cisplatin/gemcitabine (PCG) was superior to gemcitabine/cisplatin (GC) or methotrexate/vinblastine/doxorubicin/cisplatin (MVAC), the traditional first-line treatment for advanced/metastatic UC. In the case of ORR or PFS/TTP, GC+sorafenib also displayed its superiority in comparison with GC or MVAC. Despite their survival benefits, PCG or GC+sorafenib presented a relatively higher incidence of adverse events. <b><i>Conclusion:</i></b> Our results revealed that by adding a paclitaxel or sorafenib into the first-line GC, it could yield a better survival benefit, but also worsen adverse events for advanced/ metastatic UC. Clinically, physicians should weigh the merits of these approaches to maximize the survival benefits of eligible patients.