cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0wq02fd
title: CIL:39164, Paramecium caudatum, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: Sections show the origin of one cytopharyngeal ribbon of 12 microtubules from the nodes and show the tight curve the ribbon follows over the cytostomal cord. These ribbons move discoidal vesicles, acidosomes and carrier vesicles along one of their surfaces. Carrier vesicles are most abundant under the quadrulus where they arise from early endosomes and where the highest concentration of parasomal sacs and early endosomes occurs within the cell. These vesicles rapidly fuse with acidosomes. The acidosomes then dock at the membrane of the nascent phagosome. TEM taken on 4/10/74 by R. Allen with Hitachi HU11A operating at 75kV. Neg. 12,750X. Published in Poste and Nicolson (eds.) Membrane Fusion, Elsevier/North Holland Biomed. Press, p.735, 1978 and in J. Cell Biol. 1974. 63:904-22. Adapted with permission.
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; uranyl salt; osmium tetroxide; lead salt
Processing history: recorded image; film; Print from negative scanned for Photoshop.
Data qualification: Processed
description: Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness. The raw negative was scanned with an Epson Perfection V750 Pro and this high resolution image is best used for quantitative analysis. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
DOI: 10.6075/j0t43skj
title: CIL: 51807, Mus musculus, RAW 264.7 TIB-71. In Cell Image Library

description: Imaging mode: DICM
Visualization methods: Spinning disc confocal DICM & widefield DICM Using a Nikon TiE microscope equipped with a 40x, 0.95 N.A. objective and a Hamamatsu ORCA-Flash 4.0 V3 Digital CMOS camera, or a Nikon TiE spinning-disc confocal microscope equipped with a Yokogawa CSU-X1 scanning unit, an Andor iXon 888 EMCCD camera, and a 60x, 1.3 N.A. water-immersion objective or a 40x, 0.95 N.A. objective
description: A novel cell population analysis to quantify both initial and long-term drug effects, namely pseudopod adaptation and recovery following an initial drug-induced perturbation, adding drug slowly in 1/4 increments over 90 minutes.
description: ~1200 cells were imaged on glass. More gradual additions of drug or carrier were carried out in four equal increments at 0, 30, 60, 90 min, together yielding the same final drug concentration indicated in rapid addition studies. The subpopulation of ~100 cells with extended, leading edge pseudopods at t = 0 were imaged and counted in each unit area at the indicated timepoints during a 125 min observation period T=37C

Images are provided as uncorrected, 16 bit .nd2 files to preserve all original data. To view these .nd2 files:
1. Download ImageJ viewer at (https://imagej.nih.gov/ij/download.html)
2. Download the BioFormats.jar package at (https://www.openmicroscopy.org/bio-formats/downloads/)
3. Open the ImageJ directory after installation and drag the extracted BioFormats.jar package into the "Plugins" subdirectory
4. Open an .nd2 image using imageJ and select opening options when prompted, if desired. If no modifications are desired, select "OK"
5. The 16 bit image will typically look dark and will require brightness adjustment.
6. In the ImageJ toolbar, select Image &gt;&gt; Adjust &gt;&gt; Brightness/Contrast and select "Auto", or manually set the brightness and contrast.
DOI: 10.6075/j0bg2p29
title: CIL:32326, Homo sapiens, endocrine-paracrine cell of prostate gland, basal cell of prostate epithelium, luminal cell of prostate epithelium, blood vessel endothelial cell, perineural cell, sheath cell, leukocyte, prostate stromal cell, smooth muscle cell of prostate. In Cell Image Library

description: The "Image ID" for this image is provided in the Attribution section. Because the images are systematically named, information such as the antibody used in staining, the organism, tissue type, tissue block, and magnification are all encoded in the Image ID. As an example, the image 'CD44 98-395F HP ba 100.jpg' was stained with anti-CD44, was derived from human prostate tissue block 98-395F, is human prostate tissue (HP), and an image of microscopic field of view b within field a was captured at 100× magnification.


Complete technical details available in the Protocol Section of SCGAP UESC website (link provided). Briefly, radical prostatectomy specimens were transverse-sectioned 3mm thick and tissue blocks were embedded in precooled OCT (Tissue-tek) medium. Frozen tissue blocks were thin-sectioned (5µ) and fixed in cold acetone. A monoclonal primary antibody (PharMingen) was used followed by a biotinylated secondary antibody. Bound antibody was detected using avidin-biotin-peroxidase (Vector Labs) and diaminobenzidine (DAB). Sections were lightly counterstained with hematoxylin. Images were acquired using a digital camera and either an Olympus BX41 or Olympus BH2 microscope.
description: Preparation: acetone fixed tissue; tissue in polyethylene glycol embedment
Relation to intact cell: cryostat-sectioned tissue
Item type: recorded image
Imaging mode: widefield illumination; bright-field microscopy
Parameter imaged: absorption of illumination
Source of contrast: differences in adsorption or binding of stain; distribution of a specific protein; differences in intrinsic optical density
Visualization methods: hematoxylin; primary antibody plus labeled secondary antibody; horseradish peroxidase; 3,3'-diaminobenzidine (DAB); biotin-avidin amplification
Processing history: unprocessed raw data
Data qualification: Raw;intensitiesquantitation
description: CD105 Immunostain of Human Prostate. Tissue section of human prostate containing adenocarcinoma that has been immunostained for the cell-surface antigen CD105. Nuclei are stained in blue.This image is part of a collection of images generated from several specimens to characterize the distribution of CD105 in human prostate tissue. 

This image is part of a large collection of immunohistochemistry images of cell-surface antigens generated by the SCGAP Urologic Epithelial Stem Cells (UESC) Project. The overall goal of the project is to characterize and isolate epithelial stem cell populations from two urologic organs, the prostate and bladder. Links are provided below for the UESC Project database, the entire human prostate immunostain summary, the CD105 immunostain summary, and information on the specimen that this image is from. Other images of CD105 human prostate immunostains are accessible following the group link.
DOI: 10.6075/j0r78cxc
title: CIL:13865, Saccharomyces cerevisiae. In Cell Image Library

description: Cells (MATa cdc14::3HA-CDC14), grown in rich media with glucose, were fixed for 15 min in 3.7% formaldehyde and 0.1 M potassium phosphate buffer, pH 6.4. Cells were then washed twice with 0.1 M potassium phosphate buffer, pH 6.4, and resuspended in 1.2 M sorbitol in 0.12 M K2HPO4/0.033 M citric acid, pH 5.9. Fixed cells were digested with 0.1 mg/ml zymolyase-100T (US Biological) and 1/10 volume of glusulase (PerkinElmer) at 30C for 15 min, washed once, and resuspended in 1.2 M sorbitol in 0.12 M K2HPO4/0.033 M citric acid, pH 5.9. Primary antibodies were anti-HA monoclonal antibody (HA.11; 1:500) and anti-tubulin (Abcam; 1:500). Secondary antibodies were: anti-mouse Cy3 (for HA) and anti-rat FITC (for tubulin). Cells were resuspended in DAPI (1 mg/ml). Imaging was performed at 25C using a Leica DM6000 microscope equipped with a 100x/1.40 NA oil immersion objective lens, A4, L5, and TX2 filters, and a digital CCD camera (DFC350, Leica). Pictures were processed with LAS AF (leica) and ImageJ software.
description: 3HA-Cdc14 (red) localization in anaphase. The protein is released throughout the whole cell. Anaphase is determined by spindle morphology (tubulin, green) and nuclear morphology (DAPI, blue). Image is Fig 3D, right panels, in J Cell Biol. (2011) 192: 599-614. Images in Fig 3 include CIL# 13862, 13863, 13864, 13865, 13866, 13867.
description: Preparation: formaldehyde fixed tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: widefield illumination; fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein; compartmentalization of stain or label
Visualization methods: HA peptide tag; 4',6-diamidino-2-phenylindole (DAPI); primary antibody plus labeled secondary antibody; Cy3; Fluorescein (FITC)
Processing history: unprocessed raw data
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j0ff3s12
title: CIL: 53548, Homo sapiens, HeLa. In Cell Image Library

description: Visualization methods: confocal microscopy
description: Kinome Atlas documented representative images for 456 kinases expressed in HeLa cells, and visualized by immunofluorescence staining of the epitope tag. Nuclei were stained with DAPI. Two representative views from confocal microscopy were collected for each kinase. Also, organelle markers were co-stained for some kinases to indicate specific localization.
description: AGC family: The human kinome comprises 538 kinases playing essential cellular functions by catalyzing protein phosphorylations. Systematic annotation of subcellular spatial distribution of the kinome greatly facilitates investigation of normal and disease mechanisms. Here, we present Kinome Atlas (KA), an image-based map of the kinome annotated to 10 compartments of the cell. 456 epitope-tagged kinases, representing 85% of the human kinome, were expressed in HeLa cells and imaged by immunofluorescent microscopy under a unified condition. KA revealed kinase family-enriched subcellular localizations, and discovered a collection of new kinase localizations at mitochondria, plasma membrane, extracellular space, and other unique structures. This resource provides the first snapshot of the kinome under a unified condition, and is a key step toward comprehensive understanding of the spatial and temporal dynamics of the kinome in physiological and disease states.
DOI: 10.15468/dl.g7k6ma
title: Occurrence Download

description: A dataset containing 8766 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tradescantia pallida"
 ]
}

 The dataset includes 8766 records from 254 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009528-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id350451.1
title: StrainInfo SI-ID 350451.1

description: StrainInfo dataset 350451 about a strain of Plasmodium cynomolgi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350452.1
title: StrainInfo SI-ID 350452.1

description: StrainInfo dataset 350452 about a strain of Plasmodium inui. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350453.1
title: StrainInfo SI-ID 350453.1

description: StrainInfo dataset 350453 about a strain of Plasmodium fieldi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350539.1
title: StrainInfo SI-ID 350539.1

description: StrainInfo dataset 350539 about a strain of Heliophrya erhardi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350540.1
title: StrainInfo SI-ID 350540.1

description: StrainInfo dataset 350540 about a strain of Acanthamoeba hatchetti. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350541.1
title: StrainInfo SI-ID 350541.1

description: StrainInfo dataset 350541 about a strain of Acanthamoeba griffini. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350542.1
title: StrainInfo SI-ID 350542.1

description: StrainInfo dataset 350542 about a strain of Paraflabellula hoguae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350630.1
title: StrainInfo SI-ID 350630.1

description: StrainInfo dataset 350630 about a strain of Paramecium biaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350631.1
title: StrainInfo SI-ID 350631.1

description: StrainInfo dataset 350631 about a strain of Paramecium biaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350632.1
title: StrainInfo SI-ID 350632.1

description: StrainInfo dataset 350632 about a strain of Paramecium biaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350454.1
title: StrainInfo SI-ID 350454.1

description: StrainInfo dataset 350454 about a strain of Trypanosoma cruzi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350455.1
title: StrainInfo SI-ID 350455.1

description: StrainInfo dataset 350455 about a strain of Trypanosoma cruzi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.ug87yv
title: Occurrence Download

description: A dataset containing 9358 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus secalinus L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9358 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001052-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id350456.1
title: StrainInfo SI-ID 350456.1

description: StrainInfo dataset 350456 about a strain of Plasmodium inui. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350457.1
title: StrainInfo SI-ID 350457.1

description: StrainInfo dataset 350457 about a strain of Herpetomonas. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350543.1
title: StrainInfo SI-ID 350543.1

description: StrainInfo dataset 350543 about a strain of Lingulamoeba leei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350544.1
title: StrainInfo SI-ID 350544.1

description: StrainInfo dataset 350544 about a strain of Tetrahymena thermophila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350545.1
title: StrainInfo SI-ID 350545.1

description: StrainInfo dataset 350545 about a strain of Tetrahymena thermophila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350633.1
title: StrainInfo SI-ID 350633.1

description: StrainInfo dataset 350633 about a strain of Paramecium biaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350634.1
title: StrainInfo SI-ID 350634.1

description: StrainInfo dataset 350634 about a strain of Paramecium biaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350635.1
title: StrainInfo SI-ID 350635.1

description: StrainInfo dataset 350635 about a strain of Paramecium biaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350636.1
title: StrainInfo SI-ID 350636.1

description: StrainInfo dataset 350636 about a strain of Paramecium biaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350458.1
title: StrainInfo SI-ID 350458.1

description: StrainInfo dataset 350458 about a strain of Didinium nasutum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350459.1
title: StrainInfo SI-ID 350459.1

description: StrainInfo dataset 350459 about a strain of Paramecium octaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350460.1
title: StrainInfo SI-ID 350460.1

description: StrainInfo dataset 350460 about a strain of Paramecium octaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350461.1
title: StrainInfo SI-ID 350461.1

description: StrainInfo dataset 350461 about a strain of Paramecium decaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350546.1
title: StrainInfo SI-ID 350546.1

description: StrainInfo dataset 350546 about a strain of Tetrahymena thermophila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350547.1
title: StrainInfo SI-ID 350547.1

description: StrainInfo dataset 350547 about a strain of Tetrahymena thermophila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.ff8tqr
title: Occurrence Download

description: A dataset containing 24026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is MUSCARI COMOSUM (L.) MILL.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 24026 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016814-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id350548.1
title: StrainInfo SI-ID 350548.1

description: StrainInfo dataset 350548 about a strain of Tetrahymena thermophila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350549.1
title: StrainInfo SI-ID 350549.1

description: StrainInfo dataset 350549 about a strain of Tetrahymena thermophila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/yzl1qs
title: Système d'Information sur la Nature et les Paysages d'Ile de France - Données du naturaliste Piolain Julien provenant de la base de donnée du SINP Île-de-France CETTIA

description: Jeux de données provenant de la base de données CETTIA du Système d'Information sur la Nature et les Paysages d'Ile de France. Il concerne la faune à l'exception des insectes.
DOI: 10.60712/si-id350637.1
title: StrainInfo SI-ID 350637.1

description: StrainInfo dataset 350637 about a strain of Paramecium biaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350638.1
title: StrainInfo SI-ID 350638.1

description: StrainInfo dataset 350638 about a strain of Paramecium biaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350639.1
title: StrainInfo SI-ID 350639.1

description: StrainInfo dataset 350639 about a strain of Paramecium biaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.