cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28208902.v1
title: Additional file 1 of Rapid identification of bacterial select agents using loop-mediated isothermal amplification

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28208934
title: Additional file 1 of Human PBMC-based humanized mice exhibit myositis features and serve as a drug evaluation model

description: Additional file 1: Supplemental material
DOI: 10.6084/m9.figshare.28208934.v1
title: Additional file 1 of Human PBMC-based humanized mice exhibit myositis features and serve as a drug evaluation model

description: Additional file 1: Supplemental material
DOI: 10.6084/m9.figshare.28208958
title: Additional file 1 of Evaluation of a biomarker for amyotrophic lateral sclerosis derived from a hypomethylated DNA signature of human motor neurons

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28208958.v1
title: Additional file 1 of Evaluation of a biomarker for amyotrophic lateral sclerosis derived from a hypomethylated DNA signature of human motor neurons

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28208968
title: Additional file 1 of How Delphi studies in the health sciences find consensus: a scoping review

description: Additional file 1: Overview of the analyzed publications and results of the qualitative content analysis.
DOI: 10.6084/m9.figshare.28208968.v1
title: Additional file 1 of How Delphi studies in the health sciences find consensus: a scoping review

description: Additional file 1: Overview of the analyzed publications and results of the qualitative content analysis.
DOI: 10.6084/m9.figshare.28208974
title: Additional file 2 of Eating disorders in minority ethnic populations in Australia, Canada, Aotearoa New Zealand and the UK: a scoping review

description: Additional File 2: List of Excluded Articles
DOI: 10.6084/m9.figshare.28208976
title: Additional file 2 of Impact of worklist selection on point-of-care ultrasound workflow – a quality improvement project

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28208976.v1
title: Additional file 2 of Impact of worklist selection on point-of-care ultrasound workflow – a quality improvement project

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28208974.v1
title: Additional file 2 of Eating disorders in minority ethnic populations in Australia, Canada, Aotearoa New Zealand and the UK: a scoping review

description: Additional File 2: List of Excluded Articles
DOI: 10.6084/m9.figshare.28208989
title: Additional file 2 of SenPred: a single-cell RNA sequencing-based machine learning pipeline to classify deeply senescent dermal fibroblast cells for the detection of an in vivo senescent cell burden

description: Additional file 2: Supplementary Table S2, a List of matrisome genes used to cluster samples in Figure S4.
DOI: 10.6084/m9.figshare.28208989.v1
title: Additional file 2 of SenPred: a single-cell RNA sequencing-based machine learning pipeline to classify deeply senescent dermal fibroblast cells for the detection of an in vivo senescent cell burden

description: Additional file 2: Supplementary Table S2, a List of matrisome genes used to cluster samples in Figure S4.
DOI: 10.6084/m9.figshare.28209006
title: Additional file 1 of Slight thermal stress exerts genetic diversity selection at coral (Acropora digitifera) larval stages

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28209006.v1
title: Additional file 1 of Slight thermal stress exerts genetic diversity selection at coral (Acropora digitifera) larval stages

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28209009
title: Additional file 2 of Slight thermal stress exerts genetic diversity selection at coral (Acropora digitifera) larval stages

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28209009.v1
title: Additional file 2 of Slight thermal stress exerts genetic diversity selection at coral (Acropora digitifera) larval stages

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28209021
title: Additional file 6 of Slight thermal stress exerts genetic diversity selection at coral (Acropora digitifera) larval stages

description: Supplementary Material 6.
DOI: 10.6084/m9.figshare.28209021.v1
title: Additional file 6 of Slight thermal stress exerts genetic diversity selection at coral (Acropora digitifera) larval stages

description: Supplementary Material 6.
DOI: 10.6084/m9.figshare.28209024
title: Additional file 7 of Slight thermal stress exerts genetic diversity selection at coral (Acropora digitifera) larval stages

description: Supplementary Material 7.
DOI: 10.6084/m9.figshare.28209024.v1
title: Additional file 7 of Slight thermal stress exerts genetic diversity selection at coral (Acropora digitifera) larval stages

description: Supplementary Material 7.
DOI: 10.6084/m9.figshare.28209031
title: Additional file 2 of The SIRT5-JIP4 interaction promotes osteoclastogenesis by modulating RANKL-induced signaling transduction

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28209031.v1
title: Additional file 2 of The SIRT5-JIP4 interaction promotes osteoclastogenesis by modulating RANKL-induced signaling transduction

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28209046
title: Additional file 2 of Alternative 3′ UTR polyadenylation is disrupted in the rNLS8 mouse model of ALS/FTLD

description: Supplementary Material 2: Additional file 2. Table S1. APAlyzer analysis of rNLS8 mice. Table S2. REPAC analysis of rNLS8 mice. Table S3. APAlyzer analysis of TDP-43ΔNLS mice. Table S4. REPAC analysis of TDP-43ΔNLS mice. Table S5. DAVID analysis of APA genes in rNLS8 mice. Table S6. APAlyzer analysis of mice targeted with TDP-43 ASOs. Table S7. REPAC analysis mice targeted with TDP-43 ASOs. Table S8. CLIP-seq analysis of mouse TDP-43 binding sites. Table S9. APAlyzer analysis of TDP-43 Tg mice. Table S10. REPAC analysis of TDP-43 Tg mice. Table S11. APAlyzer analysis of microglia from rNLS8 mice. Table S12. REPAC analysis of microglia from rNLS8 mice. Table S13. Gene expression of APA genes in rNLS8 mice. Table S14. Protein levels of APA genes from a proteomic database. Table S15. APAlyzer analysis of TDP-43(M337V) iPSC motor neurons. Table S16. REPAC analysis of TDP-43(M337V) iPSC motor neurons. Table S17. APAlyzer analysis of TDP-43(K263E) iPSC cortical neurons. Table S18. REPAC analysis of TDP-43(K263E) iPSC cortical neurons. Table S19. APAlyzer analysis of TDP-43 RNAi knock-down in human motor neurons. Table S20. REPAC analysis of TDP-43 RNAi knock-down in human motor neurons. Table S21. A comparison of APA genes identified by APAlyzer in rNLS8 mice with list of APA genes in iNeurons from 3′-end sequencing. Table S22. A list of APA genes identified by APAlyzer in rNLS8 mice with evidence of conservation in human disease models. Table S23. A table summarizing the methodological details and results for each set of RNA sequencing data utilized
DOI: 10.6084/m9.figshare.28209046.v1
title: Additional file 2 of Alternative 3′ UTR polyadenylation is disrupted in the rNLS8 mouse model of ALS/FTLD

description: Supplementary Material 2: Additional file 2. Table S1. APAlyzer analysis of rNLS8 mice. Table S2. REPAC analysis of rNLS8 mice. Table S3. APAlyzer analysis of TDP-43ΔNLS mice. Table S4. REPAC analysis of TDP-43ΔNLS mice. Table S5. DAVID analysis of APA genes in rNLS8 mice. Table S6. APAlyzer analysis of mice targeted with TDP-43 ASOs. Table S7. REPAC analysis mice targeted with TDP-43 ASOs. Table S8. CLIP-seq analysis of mouse TDP-43 binding sites. Table S9. APAlyzer analysis of TDP-43 Tg mice. Table S10. REPAC analysis of TDP-43 Tg mice. Table S11. APAlyzer analysis of microglia from rNLS8 mice. Table S12. REPAC analysis of microglia from rNLS8 mice. Table S13. Gene expression of APA genes in rNLS8 mice. Table S14. Protein levels of APA genes from a proteomic database. Table S15. APAlyzer analysis of TDP-43(M337V) iPSC motor neurons. Table S16. REPAC analysis of TDP-43(M337V) iPSC motor neurons. Table S17. APAlyzer analysis of TDP-43(K263E) iPSC cortical neurons. Table S18. REPAC analysis of TDP-43(K263E) iPSC cortical neurons. Table S19. APAlyzer analysis of TDP-43 RNAi knock-down in human motor neurons. Table S20. REPAC analysis of TDP-43 RNAi knock-down in human motor neurons. Table S21. A comparison of APA genes identified by APAlyzer in rNLS8 mice with list of APA genes in iNeurons from 3′-end sequencing. Table S22. A list of APA genes identified by APAlyzer in rNLS8 mice with evidence of conservation in human disease models. Table S23. A table summarizing the methodological details and results for each set of RNA sequencing data utilized
DOI: 10.6084/m9.figshare.28209066
title: Additional file 2 of Exome sequencing reveals a rare damaging variant in GRIN2C in familial late-onset Alzheimer's disease

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28209066.v1
title: Additional file 2 of Exome sequencing reveals a rare damaging variant in GRIN2C in familial late-onset Alzheimer's disease

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28209052
title: Additional file 1 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 1. Metadata tables of the genomes used. Table S1: Genomes Metadata. List of 3840 genomes used at the start of the study with information on the source, quality assigned, taxonomic information based on GTDB, checkM metrics of assembly quality, bioproject accession numbers for all genomes, assigned Mash-clusters at two levels for selected Streptomyces genomes, and the RED groups from prior study. Table S2. Average BGCs (species). Number of BGCs on average across 808 detected species. Table S3. Average BGCs (Mash-clusters). Number of BGCs on average across 42 secondary Mash-clusters.
DOI: 10.6084/m9.figshare.28209052.v1
title: Additional file 1 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 1. Metadata tables of the genomes used. Table S1: Genomes Metadata. List of 3840 genomes used at the start of the study with information on the source, quality assigned, taxonomic information based on GTDB, checkM metrics of assembly quality, bioproject accession numbers for all genomes, assigned Mash-clusters at two levels for selected Streptomyces genomes, and the RED groups from prior study. Table S2. Average BGCs (species). Number of BGCs on average across 808 detected species. Table S3. Average BGCs (Mash-clusters). Number of BGCs on average across 42 secondary Mash-clusters.
DOI: 10.6084/m9.figshare.28209058
title: Additional file 3 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 3. Tables for detected BGCs across 2371 genomes of HQ and MQ quality. Table S4: BGCs count. Table with number of BGCs detected in each of the genomes analyzed. Table S5: BGC information. Metadata table with information on each of the detected BGCs.
DOI: 10.6084/m9.figshare.28209058.v1
title: Additional file 3 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 3. Tables for detected BGCs across 2371 genomes of HQ and MQ quality. Table S4: BGCs count. Table with number of BGCs detected in each of the genomes analyzed. Table S5: BGC information. Metadata table with information on each of the detected BGCs.
DOI: 10.6084/m9.figshare.28209061
title: Additional file 4 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 4. Tables for Mash-based clustering and silhouette scores. Table S6. Mash distances. Table with Mash based distances across all 2371 selected genomes. Table S7. Silhouette scores (primary). Table with list of 2371 genomes with assigned clusters based on clustering analysis. The columns represent the assigned clusters after each filtering round (upto 5). The genomes being removed based on silhouette score cutoff of 0.4 are annotated as “Dropped”. The columns also mention the silhouette score at each round of filtering. The final round includes 1999 genomes with primary Mash-cluster assignments. Table S8. Silhouette scores (secondary). Table with list of 1999 genomes with assigned clusters at secondary level based on clustering analysis. The columns represent the assigned clusters after each filtering round (upto 3). The genomes being removed based on silhouette score cutoff of 0.4 are annotated as “Dropped”. The columns also mention the silhouette score at each round of filtering. The final round includes 1670 genomes with secondary Mash-cluster assignments.
DOI: 10.6084/m9.figshare.28209061.v1
title: Additional file 4 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 4. Tables for Mash-based clustering and silhouette scores. Table S6. Mash distances. Table with Mash based distances across all 2371 selected genomes. Table S7. Silhouette scores (primary). Table with list of 2371 genomes with assigned clusters based on clustering analysis. The columns represent the assigned clusters after each filtering round (upto 5). The genomes being removed based on silhouette score cutoff of 0.4 are annotated as “Dropped”. The columns also mention the silhouette score at each round of filtering. The final round includes 1999 genomes with primary Mash-cluster assignments. Table S8. Silhouette scores (secondary). Table with list of 1999 genomes with assigned clusters at secondary level based on clustering analysis. The columns represent the assigned clusters after each filtering round (upto 3). The genomes being removed based on silhouette score cutoff of 0.4 are annotated as “Dropped”. The columns also mention the silhouette score at each round of filtering. The final round includes 1670 genomes with secondary Mash-cluster assignments.
DOI: 10.6084/m9.figshare.28209067.v1
title: Additional file 5 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 5. Phylogenetic trees using different methods. Three different phylogenetic tree files were calculated using autoMLST, getphylo and GTDB-Tk methods. The iTOL project with all the phylogenetic tree can be found at the link below: https://itol.embl.de/shared/omkar31.
DOI: 10.6084/m9.figshare.28209067
title: Additional file 5 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 5. Phylogenetic trees using different methods. Three different phylogenetic tree files were calculated using autoMLST, getphylo and GTDB-Tk methods. The iTOL project with all the phylogenetic tree can be found at the link below: https://itol.embl.de/shared/omkar31.
DOI: 10.6084/m9.figshare.28209070
title: Additional file 6 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 6. Tables for detected GCFs using BiGSLiCE and regrouping of known GCFs. Table S9. GCFs (BiGSLICE). List of detected GCFs using BiGSLICE with metadata on number of BGCs and combined GCF ID that were regrouped based on shared known clusters blast hits. Table S10. GCFs (Regrouped): List of GCFs as defined in this study using BiGSLICE along with knownclusterblast similarity with metadata on number of BGCs BiGSLICE defined GCFs. Table S11. BGC information: Assignment of GCFs and combined GCFs for each BGC.
DOI: 10.6084/m9.figshare.28209070.v1
title: Additional file 6 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 6. Tables for detected GCFs using BiGSLiCE and regrouping of known GCFs. Table S9. GCFs (BiGSLICE). List of detected GCFs using BiGSLICE with metadata on number of BGCs and combined GCF ID that were regrouped based on shared known clusters blast hits. Table S10. GCFs (Regrouped): List of GCFs as defined in this study using BiGSLICE along with knownclusterblast similarity with metadata on number of BGCs BiGSLICE defined GCFs. Table S11. BGC information: Assignment of GCFs and combined GCFs for each BGC.
DOI: 10.6084/m9.figshare.28209073
title: Additional file 7 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 7. Cytoscape file of BiG-SCAPE similarity network for BGCs in M4 Mash-cluster. The network visualizations corresponding to Figs. 4B and 4C. The network included edges based on BiGSCAPE similarity. Additional edges were added if the BGCs appeared next to each other on the chromosome.
DOI: 10.6084/m9.figshare.28209073.v1
title: Additional file 7 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 7. Cytoscape file of BiG-SCAPE similarity network for BGCs in M4 Mash-cluster. The network visualizations corresponding to Figs. 4B and 4C. The network included edges based on BiGSCAPE similarity. Additional edges were added if the BGCs appeared next to each other on the chromosome.
DOI: 10.6084/m9.figshare.28209076
title: Additional file 8 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 8. Cytoscape file of BiG-SCAPE similarity network for BGCs in M6 Mash-cluster. The network visualizations corresponding to Fig. 5. The network included edges based on BiGSCAPE similarity. Additional edges were added if the BGCs appeared next to each other on the chromosome.
DOI: 10.6084/m9.figshare.28209076.v1
title: Additional file 8 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

description: Additional file 8. Cytoscape file of BiG-SCAPE similarity network for BGCs in M6 Mash-cluster. The network visualizations corresponding to Fig. 5. The network included edges based on BiGSCAPE similarity. Additional edges were added if the BGCs appeared next to each other on the chromosome.
DOI: 10.6084/m9.figshare.28209096
title: Additional file 2 of Characterization of liver, adipose, and fecal microbiome in obese patients with MASLD: links with disease severity and metabolic dysfunction parameters

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28209096.v1
title: Additional file 2 of Characterization of liver, adipose, and fecal microbiome in obese patients with MASLD: links with disease severity and metabolic dysfunction parameters

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28082750.v2
title: Cross-cultural adaptation and validation of the 9-item Indonesian HIV/AIDS Stigma Scale (InHASS-9) in the general population

description: This project aims to conduct cross-cultural adaptation and validation of the 9-item Indonesian HIV/AIDS Stigma Scale (InHASS-9) for the general population. It involves the translation, cultural adaptation, and evaluation of the scale's reliability and validity in the Indonesian context, focusing on measuring stigma towards People Living with HIV/AIDS (PLWHA). The project also analyzes stigma differences across various sociodemographic backgrounds to enhance understanding of the social challenges faced by PLWHA in Indonesia.
DOI: 10.15468/dl.r3vb42
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Adelges nordmannianae",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059974-250827131500795/datasets/export for details.
DOI: 10.15468/dl.4vh622
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Adelges nordmannianae",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059975-250827131500795/datasets/export for details.
DOI: 10.15468/dl.cjhmsc
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Adelges nordmannianae",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 86 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059976-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8qcsw
title: Occurrence Download

description: A dataset containing 768 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macrocallista nimbosa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 768 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059972-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13049562
title: Antutu Benchmark
DOI: 10.21227/z4mc-k240
title: "BreakHis-IB: Leakage-Checked Splits Across Magnifications for Robust BreakHis Evaluation"

description: "BreakHis is a widely used breast cancer histopathology dataset containing H&E-stained microscopy images across four magnifications (40\u00d7\/100\u00d7\/200\u00d7\/400\u00d7) and eight histological subtypes spanning benign and malignant classes. Reported results on BreakHis often vary due to (i) class and subtype imbalance, (ii) magnification bias, and (iii) split protocols that risk patient leakage. We present BreakHis-IB, a derivative resource that provides patient-held-out evaluation protocols with a subtype-balanced-per-magnification test set, a companion natural-frequency test split, and leakage-checked train\/validation partitions. We release split CSVs, a split-builder notebook\/script, and a fairness notebook that reports per-subtype and per-magnification metrics (macro-F1, balanced accuracy, sensitivity gaps) with optional stain-normalization toggles (Macenko\/Vahadane). BreakHis-IB does not redistribute images; instead, it enables users to recreate the exact splits locally from the official dataset. This standardization improves comparability and supports inclusivity-oriented evaluation in computational pathology."
DOI: 10.6084/m9.figshare.30120508
title: GEF_Figshare repository

description: This is all the data used in manuscript titled "<b>A unimolecular GLP-1 and FGF21 dual agonist for treatment of metabolic dysfunction-associated steatohepatitis</b>".
DOI: 10.6084/m9.figshare.30120508.v1
title: GEF_Figshare repository

description: This is all the data used in manuscript titled "<b>A unimolecular GLP-1 and FGF21 dual agonist for treatment of metabolic dysfunction-associated steatohepatitis</b>".
DOI: 10.15468/dl.wtearp
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Marcia cordata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059977-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17114147
title: Flux reducer geometry files and laboratory measurements

description: SIMION ion optics geometry files for electrostatic analyer designs with different flux reducer geometries, namely different positions and sizes. Laboratory measurements of a laboratory prototype taken at NASA Marshall's Low Energy Electron and Ion Facility at different energies and flux reducer ratios. Software in Python and IDL to read-in and analyzer simulation and laboratory measurements.