cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11940426
title: Virality Measures of "Data Tweets"

description: This dataset consists of two files in TSV format derived from a large number of tweets (16754250) that were identified as containing different forms of "numeric data" in an extended collection of tweets from Twitter's 1% public sample over 11 months from September 2018. <br>Both files have a key column labelled "TweetID" which is the Twitter API ID that can be used to retrieve the full twitter data (recommended retrieval via TWARC).<br>The file "datatweet-numeric-occurrences.txt" consists of three columns:1 TweetID2 NumericDataString - the actual substring from the tweet which was recognised as numeric e.g. "500 billion" or "24 years"3 NumericType - one of a set of identified numeric types e.g. "[cardinal]" or "[time]". <br>The "virality" associated with the tweets in which the numeric data has been found is given in the file "datatweet-virality.txt".Its columns are as follows1 id of the tweet2 retweet_count3 favorite_count4 followers_count (of the user who made the tweet)<br>If this tweet is a retweet of another (original) tweet, the following columns are non-empty:5 id of the original tweet6 favourite_count of the original tweet7 followers_count of the original tweet's author<br>NB if col 2 is 0, then cols 5-7 will be blank.If col 2 &gt;0, then it contains the number of retweets of the original tweet, not the number of times that this retweet has been retweeted.
DOI: 10.6084/m9.figshare.11940324
title: Metadata record for: A synthetic energy dataset for non-intrusive load monitoring in households

description: This dataset contains key characteristics about the data described in the Data Descriptor A synthetic energy dataset for non-intrusive load monitoring in households. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11940324.v1
title: Metadata record for: A synthetic energy dataset for non-intrusive load monitoring in households

description: This dataset contains key characteristics about the data described in the Data Descriptor A synthetic energy dataset for non-intrusive load monitoring in households. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11938602
title: Gut microbiome

description: Streptomycin-treated mice
DOI: 10.6084/m9.figshare.11938602.v1
title: Gut microbiome

description: Streptomycin-treated mice
DOI: 10.6084/m9.figshare.11938560
title: Supplementary Material for: Paradoxical Hidradenitis Suppurativa in Patients Receiving TNF-α Inhibitors: Case Series, Systematic Review, and Case Meta-Analysis

description: <b><i>Background/Aims:</i></b> TNF-α inhibitors represent the most advanced approved therapeutic option for moderate and severe forms of hidradenitis suppurativa (HS). However, in recent years, cases of paradoxical HS secondary to the use of these biological drugs have been described, with very few cases reported in the literature. The aims of this study are (1) to present 2 new cases of paradoxical HS and (2) to perform a systematic review of scientific evidence regarding paradoxical HS with TNF-α inhibitors. <b><i>Material and Methods:</i></b> This is a retrospective study in which we searched all the cases of paradoxical HS secondary to the use of TNF-α inhibitors published in the literature and included two additional cases observed in our clinical practice. <b><i>Results:</i></b> A total of 34 patients under TNF-α inhibitor treatment were included (adalimumab = 21; infliximab = 9; etanercept = 4). The median delay from exposure to TNF-α inhibitor and the development of paradoxical HS was 12 months (range 1–72). The majority of patients were Hurley stage II (58.8%). Clinical improvement and complete remission were more frequent when the TNF-α inhibitor was stopped or switched to another biological agent with a different therapeutic target rather than maintenance or change to another TNF-α inhibitor. <b><i>Conclusions:</i></b> Paradoxical HS is an unusual adverse effect of TNF-α inhibitors. When this adverse effect appears, interruption or substitution of treatment is associated with a better clinical outcome.
DOI: 10.6084/m9.figshare.11938278
title: Population structure of bycaught harbour porpoise (<i>Phocoena phocoena</i>) in Norway

description: The preference for coastal habitats makes the harbour porpoise, <i>Phocoena phocoena</i>, vulnerable to fisheries conflicts and hence prone to die due to entangling in fishing nets. An opportunistic sampling of such casualties (134 individuals) in Norwegian waters was used to assess the genetic population structure of the species by SNP-genotyping at 78 loci. The results of genetic clustering obtained for these individuals failed to identify more than one genetic group. Likewise, the individually-based <i>F</i> did not meet an Isolation-by-Distance pattern, thus supporting the conclusion that harbour porpoise in Norway probably belongs to a single genetic group or population.
DOI: 10.6084/m9.figshare.11938278.v1
title: Population structure of bycaught harbour porpoise (<i>Phocoena phocoena</i>) in Norway

description: The preference for coastal habitats makes the harbour porpoise, <i>Phocoena phocoena</i>, vulnerable to fisheries conflicts and hence prone to die due to entangling in fishing nets. An opportunistic sampling of such casualties (134 individuals) in Norwegian waters was used to assess the genetic population structure of the species by SNP-genotyping at 78 loci. The results of genetic clustering obtained for these individuals failed to identify more than one genetic group. Likewise, the individually-based <i>F</i> did not meet an Isolation-by-Distance pattern, thus supporting the conclusion that harbour porpoise in Norway probably belongs to a single genetic group or population.
DOI: 10.6084/m9.figshare.11938272
title: The assembled transcripts of Largemouth bass

description: This dataset contains transcripts assembled with Trinity software. The sequences were generated from 27 largemouth bass liver libraries.
DOI: 10.6084/m9.figshare.11938272.v1
title: The assembled transcripts of Largemouth bass

description: This dataset contains transcripts assembled with Trinity software. The sequences were generated from 27 largemouth bass liver libraries.
DOI: 10.6084/m9.figshare.11938170
title: Interaction of the mTERT telomerase catalytic subunit with the c-Abl tyrosine kinase in mouse granulosa cells

description: <b>Context:</b> Oocyte and granulosa cells (GCs) have bidirectional communication and GCs play an important role in folliculogenesis and proliferation of GCs is very important for the development of ovulatory follicle. DNA double-strand breaks activate c-Abl protein tyrosine kinase and c-Abl has a functional role in repairement of DNA and control of telomere. <b>Objective:</b> In this study, we hypothesized that c-Abl has a regulative role on mTERT in mouse ovarian granulosa cells (GCs) and we aimed to detect c-Abl and mTERT interaction in mouse primary culture of GCs. <b>Materials and methods:</b> Mouse ovarian granulosa cell were cultured and siRNA-mediated knockdown approach was used to knockdown c-Abl expression. <b>Results:</b> We showed c-Abl and mTERT immunolocalization <i>in vivo</i> and <i>in vitro</i> mouse GCs. c-Abl and mTERT were constitutively expressed in mouse granulosa cells and c-Abl presented more intense expression in granulosa cells than mTERT expression. The interaction of the c-Abl-mTERT is supported by the exhibition that c-Abl siRNA knockdown cells show decreased mTERT expression. We also present an interaction between c-Abl and mTERT by immunoprecipitation. In addition, our results indicated that the down-regulation of c-Abl was also accompanied by reduced expression of proliferating cell nuclear antigen (PCNA) in GCs. <b>Conclusions:</b> We suggest that mTERT may associate with the c-Abl in mouse GCs and the interactions between c-Abl and mTERT suggest a role for c-Abl in the regulation of telomerase function and proliferation in mouse granulosa cells.
DOI: 10.6084/m9.figshare.11938164
title: RNAdata_Common and Specific Genes

description: The emergence of eusociality is one of the major events in evolution. Although several previous studies have investigated the mechanism underlying caste differentiation and social behavior of eusocial insects including ants and honeybees, the molecular circuits governing the sociality of these insects remain obscure. In this study, we profiled the brain transcriptome and chromatin accessibility of all categories of adult castes: queens, males, gynes and workers in Monomorium pharaonis which is a typical caste-dependent eusocial insect. We created a comprehensive dataset including 16 RNA-seq and 16 ATAC-seq profiles from 4 biological replicates. We also demonstrated strong reproducibility of the datasets and identified specific genes and open chromatin regions in the genome that may be associated with caste differentiation. Overall, our data will be a valuable resource for further study of the mechanisms underlying eusocial insect behavior, particularly the role of brain in the control of eusociality.
DOI: 10.6084/m9.figshare.11938170.v1
title: Interaction of the mTERT telomerase catalytic subunit with the c-Abl tyrosine kinase in mouse granulosa cells

description: <b>Context:</b> Oocyte and granulosa cells (GCs) have bidirectional communication and GCs play an important role in folliculogenesis and proliferation of GCs is very important for the development of ovulatory follicle. DNA double-strand breaks activate c-Abl protein tyrosine kinase and c-Abl has a functional role in repairement of DNA and control of telomere. <b>Objective:</b> In this study, we hypothesized that c-Abl has a regulative role on mTERT in mouse ovarian granulosa cells (GCs) and we aimed to detect c-Abl and mTERT interaction in mouse primary culture of GCs. <b>Materials and methods:</b> Mouse ovarian granulosa cell were cultured and siRNA-mediated knockdown approach was used to knockdown c-Abl expression. <b>Results:</b> We showed c-Abl and mTERT immunolocalization <i>in vivo</i> and <i>in vitro</i> mouse GCs. c-Abl and mTERT were constitutively expressed in mouse granulosa cells and c-Abl presented more intense expression in granulosa cells than mTERT expression. The interaction of the c-Abl-mTERT is supported by the exhibition that c-Abl siRNA knockdown cells show decreased mTERT expression. We also present an interaction between c-Abl and mTERT by immunoprecipitation. In addition, our results indicated that the down-regulation of c-Abl was also accompanied by reduced expression of proliferating cell nuclear antigen (PCNA) in GCs. <b>Conclusions:</b> We suggest that mTERT may associate with the c-Abl in mouse GCs and the interactions between c-Abl and mTERT suggest a role for c-Abl in the regulation of telomerase function and proliferation in mouse granulosa cells.
DOI: 10.6084/m9.figshare.11938158
title: Common and specific genes

description: The emergence of eusociality is one of the major events in evolution. Although several previous studies have investigated the mechanism underlying caste differentiation and social behavior of eusocial insects including ants and honeybees, the molecular circuits governing the sociality of these insects remain obscure. In this study, we profiled the brain transcriptome and chromatin accessibility of all categories of adult castes: queens, males, gynes and workers in Monomorium pharaonis which is a typical caste-dependent eusocial insect. We created a comprehensive dataset including 16 RNA-seq and 16 ATAC-seq profiles from 4 biological replicates. We also demonstrated strong reproducibility of the datasets and identified specific genes and open chromatin regions in the genome that may be associated with caste differentiation. Overall, our data will be a valuable resource for further study of the mechanisms underlying eusocial insect behavior, particularly the role of brain in the control of eusociality.
DOI: 10.6084/m9.figshare.11938164.v1
title: Common and specific genes

description: The emergence of eusociality is one of the major events in evolution. Although several previous studies have investigated the mechanism underlying caste differentiation and social behavior of eusocial insects including ants and honeybees, the molecular circuits governing the sociality of these insects remain obscure. In this study, we profiled the brain transcriptome and chromatin accessibility of all categories of adult castes: queens, males, gynes and workers in Monomorium pharaonis which is a typical caste-dependent eusocial insect. We created a comprehensive dataset including 16 RNA-seq and 16 ATAC-seq profiles from 4 biological replicates. We also demonstrated strong reproducibility of the datasets and identified specific genes and open chromatin regions in the genome that may be associated with caste differentiation. Overall, our data will be a valuable resource for further study of the mechanisms underlying eusocial insect behavior, particularly the role of brain in the control of eusociality.
DOI: 10.6084/m9.figshare.11938047
title: Chikungunya ML Data

description: IQ-Tree maximum likelihood input file, output file, and supplementary figure of nine Bolivian Chikungunya genome sequences and 334 nearest match sequences downloaded from Genbank.
DOI: 10.6084/m9.figshare.11938047.v2
title: Chikungunya ML Data

description: IQ-Tree maximum likelihood input file, output file, and supplementary figure of nine Bolivian Chikungunya genome sequences and 334 nearest match sequences downloaded from Genbank.
DOI: 10.6084/m9.figshare.11938047.v1
title: Untitled Item

description: IQ-Tree maximum likelihood input file, output file, and supplementary figure of nine Bolivian Chikungunya genome sequences and 334 nearest match sequences downloaded from Genbank.
DOI: 10.6084/m9.figshare.11938029
title: Additional file 7 of Error-corrected sequencing strategies enable comprehensive detection of leukemic mutations relevant for diagnosis and minimal residual disease monitoring

description: Additional file 7: Table S3. Structural variants identified via RNA-ECS in primary diagnostic samples.
DOI: 10.6084/m9.figshare.11938029.v1
title: Additional file 7 of Error-corrected sequencing strategies enable comprehensive detection of leukemic mutations relevant for diagnosis and minimal residual disease monitoring

description: Additional file 7: Table S3. Structural variants identified via RNA-ECS in primary diagnostic samples.
DOI: 10.6084/m9.figshare.11938017
title: Additional file 5 of Error-corrected sequencing strategies enable comprehensive detection of leukemic mutations relevant for diagnosis and minimal residual disease monitoring

description: Additional file 5: Table S1. Summary of demographics for the pediatric leukemia samples.
DOI: 10.6084/m9.figshare.11938023
title: Additional file 6 of Error-corrected sequencing strategies enable comprehensive detection of leukemic mutations relevant for diagnosis and minimal residual disease monitoring

description: Additional file 6: Table S2. Genes targeted on the DNA and RNA panels.
DOI: 10.6084/m9.figshare.11938017.v1
title: Additional file 5 of Error-corrected sequencing strategies enable comprehensive detection of leukemic mutations relevant for diagnosis and minimal residual disease monitoring

description: Additional file 5: Table S1. Summary of demographics for the pediatric leukemia samples.
DOI: 10.6084/m9.figshare.11938023.v1
title: Additional file 6 of Error-corrected sequencing strategies enable comprehensive detection of leukemic mutations relevant for diagnosis and minimal residual disease monitoring

description: Additional file 6: Table S2. Genes targeted on the DNA and RNA panels.
DOI: 10.6084/m9.figshare.11937948
title: Additional file 5 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 5: Table S5. Walnut trait ontology.
DOI: 10.6084/m9.figshare.11937951
title: Additional file 6 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 6: Table S6. Phenotypic raw dataset of the GWAS panel.
DOI: 10.6084/m9.figshare.11937954
title: Additional file 7 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 7: Table S7. Phenotypic raw dataset of the F1 progeny.
DOI: 10.6084/m9.figshare.11937948.v1
title: Additional file 5 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 5: Table S5. Walnut trait ontology.
DOI: 10.6084/m9.figshare.11937951.v1
title: Additional file 6 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 6: Table S6. Phenotypic raw dataset of the GWAS panel.
DOI: 10.6084/m9.figshare.11937954.v1
title: Additional file 7 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 7: Table S7. Phenotypic raw dataset of the F1 progeny.
DOI: 10.6084/m9.figshare.11937942
title: Additional file 4 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 4: Table S4. Genotyping results of SNP AX-171179714 by KASP.
DOI: 10.6084/m9.figshare.11937942.v1
title: Additional file 4 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 4: Table S4. Genotyping results of SNP AX-171179714 by KASP.
DOI: 10.6084/m9.figshare.11937930
title: Additional file 2 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 2: Table S2. Number of principal components required for bearing habit trait using Bayesian Information Criterion.
DOI: 10.6084/m9.figshare.11937933
title: Additional file 3 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 3: Table S3. ‘Franquette’ and ‘UK 6–2’ parental maps for QTL detection.
DOI: 10.6084/m9.figshare.11937930.v1
title: Additional file 2 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 2: Table S2. Number of principal components required for bearing habit trait using Bayesian Information Criterion.
DOI: 10.6084/m9.figshare.11937933.v1
title: Additional file 3 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 3: Table S3. ‘Franquette’ and ‘UK 6–2’ parental maps for QTL detection.
DOI: 10.6084/m9.figshare.11937921
title: Additional file 1 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 1: Table S1. List of association panel accessions with their origin, breeding level, pedigree when known, and their membership to clusters based on fastSTRUCTURE results for K = 3.
DOI: 10.6084/m9.figshare.11937921.v1
title: Additional file 1 of Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)

description: Additional file 1: Table S1. List of association panel accessions with their origin, breeding level, pedigree when known, and their membership to clusters based on fastSTRUCTURE results for K = 3.
DOI: 10.6084/m9.figshare.11937678
title: Additional file 1 of Comparison of amyloid PET measured in Centiloid units with neuropathological findings in Alzheimer’s disease

description: Additional file 1. Supplementary data tables.
DOI: 10.6084/m9.figshare.11937678.v1
title: Additional file 1 of Comparison of amyloid PET measured in Centiloid units with neuropathological findings in Alzheimer’s disease

description: Additional file 1. Supplementary data tables.
DOI: 10.6084/m9.figshare.11937663
title: Additional file 1 of Examining partnerships within an international knowledge translation network focused on youth mental health promotion

description: Additional file 1. Data collected using the PARTNER tool survey and software (PARTNER_data_Apr14_2019_Anonymous).
DOI: 10.6084/m9.figshare.11937654
title: Additional file 9 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017

description: Additional file 9: Tabular data. Genomic characterization summary table. Supplementary Table 3, Additional file 8 summarizes all information derived from the genomic characterization of the genomes, including: ST, subclade (A or B, for S. Napoli genomes only), plasmid replicons, antimicrobial resistance genes (AMR), SPI profiles and BacMet profiles. Additionally, it also reports basic metadata as collection year, country of isolation, source of isolation and serotype to ease data investigation.
DOI: 10.6084/m9.figshare.11937663.v1
title: Additional file 1 of Examining partnerships within an international knowledge translation network focused on youth mental health promotion

description: Additional file 1. Data collected using the PARTNER tool survey and software (PARTNER_data_Apr14_2019_Anonymous).
DOI: 10.6084/m9.figshare.11937654.v1
title: Additional file 9 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017

description: Additional file 9: Tabular data. Genomic characterization summary table. Supplementary Table 3, Additional file 8 summarizes all information derived from the genomic characterization of the genomes, including: ST, subclade (A or B, for S. Napoli genomes only), plasmid replicons, antimicrobial resistance genes (AMR), SPI profiles and BacMet profiles. Additionally, it also reports basic metadata as collection year, country of isolation, source of isolation and serotype to ease data investigation.
DOI: 10.6084/m9.figshare.11937612
title: Additional file 2 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005â€“2017

description: Additional file 2: Tabular data. Pivot table of sample metadata. Number of S. Napoli isolates per source of isolation, isolation year, country of isolation and ST, respectively.
DOI: 10.6084/m9.figshare.11937612.v1
title: Additional file 2 of Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005â€“2017

description: Additional file 2: Tabular data. Pivot table of sample metadata. Number of S. Napoli isolates per source of isolation, isolation year, country of isolation and ST, respectively.