cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7865438
title: In silico identification and characterization of novel microsatellite loci for the Blue-and-yellow Macaw Ara ararauna (Linnaeus, 1758) (Psittaciformes, Psittacidae)

description: Abstract The illegal trade is a major threat to many bird species, and parrots are common victims of this activity. Domestic and international pet markets are interested on different parrot species, such as the Blue-and-yellow Macaw (Ara ararauna). This South American macaw is not globally threatened, but is under protection from over-exploitation. This study aimed to identify and characterize novel microsatellite loci for population and parentage analysis of A. ararauna. Scaffold sequences of Ara macao available in the NCBI database were used for microsatellite searches using MsatCommander software. We tested a total of 28 loci, from which 25 were polymorphic, one was monomorphic, and two did not generated amplification products. For polymorphic loci, the mean number of alleles was 8.24 (4 – 15 alleles per locus), the observed heterozygosity ranged from 0.333 to 0.917, and the expected heterozygosity from 0.353 to 0.890. The paternity exclusion probability and identity probability were highly discriminatory. Thus, these novel microsatellite markers can be useful for population assignment and paternity tests, helping the authorities to manage macaws from the illegal trafficking and control commercial breeders.
DOI: 10.6084/m9.figshare.7865444.v1
title: Predicting LDPE/HDPE blend composition by CARS-PLS regression and confocal Raman spectroscopy

description: Abstract Industries and the scientific community currently focus on creating new ways to recycle and to reuse polymer waste that leads to serious socio-environmental risks. However, the quality of recycled polyethylenes depends strongly on their purity degree, but the distinction between Low Density Polyethylene (LDPE) and High Density Polyethylene (HDPE) by a fast and consistently good methodology is still an unsolved issue for the current recycling processes. In this study, confocal Raman spectroscopy and Competitive Adaptive Reweighted Sampling - Partial Least Squares (CARS-PLS) linear regression have been successfully applied to quantify the concentration of LDPE/HDPE blends. The effects of several regression parameters (pretreatment method, Monte Carlo sampling runs, k-fold and maximal number of latent variables for cross-validation) on the CARS-PLS model training and prediction performance were analyzed. The CARS-PLS-based models show root-mean-squared prediction error of 4.06 - 8.87 wt% of LDPE for the whole composition range of HDPE/LDPE blend.
DOI: 10.6084/m9.figshare.7865429
title: Natural ageing of polyaramide fiber from ballistic armor

description: Abstract Ballistic armor has been manufactured primarily based on polyaramide (Kevlar and Twaron) or Dyneema but the lifespan warranty in Brazil is only 5 years and after this time period they are incinerated or comminuted and ground up. This study aims to evaluate the changes on the physical, mechanical and morphological properties of polyaramide fibers of ballistic armor after natural aging. These samples with different fabrication (2005 and 2010) and usage time were exposed to natural weathering in the city of Porto Alegre, southern Brazil, during the period of one year. Morphology fiber results surfaced after ageing, it showed fiber swelling, stress cracking and defibrillation, and the results of the mechanical tensile testing of the polyaramide fibers showed a pronounced decrease (80%) in tensile strength. It can be concluded that the weight, the dtex of the fiber and the kind of fabric can influence the degradation degree under natural exposure.
DOI: 10.6084/m9.figshare.7865435.v1
title: Applications of arterial stiffness markers in peripheral arterial disease

description: Abstract Arterial stiffness has been analyzed in many different population groups with the objective of identifying cardiovascular risk early and performing specific therapeutic interventions. Increased arterial stiffness affects the capacity of the aorta and elastic arteries to adapt to pressure variations during the cardiac cycle. The main markers of arterial stiffness are pulse wave velocity (PWV), augmentation index (AIx) and central aortic pressure. They can be measured noninvasively. Patients with coronary disease or on hemodialysis who have elevated PWV or AIx have increased mortality. The association with peripheral arterial disease has been studied little. The objective of this review is to demonstrate the applicability and utility of assessing measures of arterial stiffness in patients with peripheral arterial disease.
DOI: 10.6084/m9.figshare.7865426
title: Advocacy coalitions and negotiation strategies in the revision of the forest code

description: Abstract This study aims to analyze the advocacy coalitions (classified as ‘environment’ and ‘agriculture’) established during the revision of the Brazilian Forest Code and the main negotiation strategies used. Interviews, analysis of documents and newspaper’ reports allowed capturing how the managers of the Ministries of Environment (MMA) and Agriculture, Livestock and Supply (Mapa) led these coalitions. Coalition analysis used the Advocacy Coalition Framework (ACF). Results showed both ministries used negotiation as their main strategy. The agriculture coalition invested in scientific information, while environment coalition carried out social mobilization.
DOI: 10.6084/m9.figshare.7865429.v1
title: Natural ageing of polyaramide fiber from ballistic armor

description: Abstract Ballistic armor has been manufactured primarily based on polyaramide (Kevlar and Twaron) or Dyneema but the lifespan warranty in Brazil is only 5 years and after this time period they are incinerated or comminuted and ground up. This study aims to evaluate the changes on the physical, mechanical and morphological properties of polyaramide fibers of ballistic armor after natural aging. These samples with different fabrication (2005 and 2010) and usage time were exposed to natural weathering in the city of Porto Alegre, southern Brazil, during the period of one year. Morphology fiber results surfaced after ageing, it showed fiber swelling, stress cracking and defibrillation, and the results of the mechanical tensile testing of the polyaramide fibers showed a pronounced decrease (80%) in tensile strength. It can be concluded that the weight, the dtex of the fiber and the kind of fabric can influence the degradation degree under natural exposure.
DOI: 10.6084/m9.figshare.7865438.v1
title: In silico identification and characterization of novel microsatellite loci for the Blue-and-yellow Macaw Ara ararauna (Linnaeus, 1758) (Psittaciformes, Psittacidae)

description: Abstract The illegal trade is a major threat to many bird species, and parrots are common victims of this activity. Domestic and international pet markets are interested on different parrot species, such as the Blue-and-yellow Macaw (Ara ararauna). This South American macaw is not globally threatened, but is under protection from over-exploitation. This study aimed to identify and characterize novel microsatellite loci for population and parentage analysis of A. ararauna. Scaffold sequences of Ara macao available in the NCBI database were used for microsatellite searches using MsatCommander software. We tested a total of 28 loci, from which 25 were polymorphic, one was monomorphic, and two did not generated amplification products. For polymorphic loci, the mean number of alleles was 8.24 (4 – 15 alleles per locus), the observed heterozygosity ranged from 0.333 to 0.917, and the expected heterozygosity from 0.353 to 0.890. The paternity exclusion probability and identity probability were highly discriminatory. Thus, these novel microsatellite markers can be useful for population assignment and paternity tests, helping the authorities to manage macaws from the illegal trafficking and control commercial breeders.
DOI: 10.6084/m9.figshare.7865426.v1
title: Advocacy coalitions and negotiation strategies in the revision of the forest code

description: Abstract This study aims to analyze the advocacy coalitions (classified as ‘environment’ and ‘agriculture’) established during the revision of the Brazilian Forest Code and the main negotiation strategies used. Interviews, analysis of documents and newspaper’ reports allowed capturing how the managers of the Ministries of Environment (MMA) and Agriculture, Livestock and Supply (Mapa) led these coalitions. Coalition analysis used the Advocacy Coalition Framework (ACF). Results showed both ministries used negotiation as their main strategy. The agriculture coalition invested in scientific information, while environment coalition carried out social mobilization.
DOI: 10.6084/m9.figshare.7865402
title: Effect of stock density of cultured Amazon Apple Snail Pomacea dolioides (Gastropoda: Ampullariidae) in Brazil

description: ABSTRACT This study evaluated the biomass gain, specific growth rate, absolute weight gain, and survival rate of the gastropod Pomacea dolioides cultivated in different stocking densities. To perform the experiment, samples were collected in March and June 2015. A total of 40 adult specimens were collected in the Jauary neighborhood (03°08′19.9"S, 58°27′32.5"W), municipality of Itacoatiara, AM, Brazil. They were kept in the laboratory for breeding to obtain the young P. dolioides, which were distributed into tanks containing 4 L of water and an aeration system, in three densities: 2.5 animals/L, 5 animals/L, and 10 animals/L, and were fed fish ration (34% gross protein). The specimens were measured for shell length and weight every fifteen days. The survival rate did not differ between treatments 2.5 and 5 animals/L (100%) and 10 animals/L (95.83%). The density with the best cultivation results was 2.5 animals/L, being most effective for the parameters of growth, weight gain, specific growth rate, and percentage weight gain, when compared with the other treatments after 225 days of the experiment. For future cultivation of this species, a density of 2.5 animals/L should be used to improve handling performance.
DOI: 10.6084/m9.figshare.7865405
title: Linkage disequilibrium and past effective population size in native Tunisian cattle

description: Abstract To carry out effective genome-wide association studies, information about linkage disequilibrium (LD) is essential. Here, we used medium-density SNP chips to provide estimates of LD in native Tunisian cattle. The two measures of LD that were used, mean r2 and D’, decreased from 0.26 to 0.05 and from 0.73 to 0.40, respectively, when the distance between markers increased from less than 20 Kb to 200 Kb. The decay in LD over physical distance occurred at a faster rate than that reported for European and other indigenous breeds, and reached background levels at less than 500 Kb distance. This is consistent with the absence of strong selective pressure within the Tunisian population and suggests that, in order to be effective, any potential genome-wide association mapping studies will need to use chips with higher marker density. An analysis of effective population size (Ne) based on LD data showed a decline in past Ne, with a sudden drop starting about eight generations ago. This finding, combined with the high levels of recent inbreeding revealed by runs of homozygosity (ROH) analysis, indicate that this population is endangered and may be in urgent need of a conservation plan that includes a well-designed genetic management program.
DOI: 10.6084/m9.figshare.7865411
title: EARLY DETECTION OF POOR ADHERENCE TO TREATMENT OF PEDIATRIC RHEUMATIC DISEASES: PEDIATRIC RHEUMATOLOGY ADHERENCE QUESTIONNAIRE - A PILOT STUDY

description: ABSTRACT Objective: To develop a questionnaire that allows the early detection of patients at risk for poor adherence to medical and non-medical treatment in children and adolescents with chronic rheumatic diseases. Methods: The Pediatric Rheumatology Adherence Questionnaire (PRAQ) was applied in recently diagnosed patients within a period of one to four months after confirmation of the rheumatic disease. After six months, the patients’ adherence to the medical and non-medical treatment was assessed. An internal consistency analysis was conducted to eliminate redundant questions in the PRAQ. Results: A total of 33 patients were included in the pilot study. Six months after the PRAQ had been applied, poor global adherence was observed in seven (21.2%) patients and poor adherence to medical treatment in eight (24.2%) patients. No correlation was observed between the PRAQ scores and the percentages of adherence, as well as the stratification for each index, except for a tendency to a correlation between socioeconomic index and poor adherence to medical treatment (p=0.08). A new PRAQ questionnaire with 25 of the 46 original questions was generated as a result of the reliability analysis. Conclusions: The usefulness of this questionnaire in clinical practice should be still evaluated. Due to the importance of a tool for the early detection of rheumatic patients at risk of poor adherence to treatment, the new PRAQ questionnaire should be reviewed and applied in a larger study to better define its validity and reliability.
DOI: 10.6084/m9.figshare.7865396
title: PREDICTIVE EQUATIONS OF MAXIMUM OXYGEN CONSUMPTION BY SHUTTLE RUN TEST IN CHILDREN AND ADOLESCENTS: A SYSTEMATIC REVIEW

description: ABSTRACT Objective: To systematically review the literature as for the level of evidence of predictive equations of VO2peak through the 20-meter shuttle run test (20m-SRT) in children and adolescents. Data sources: Searches were conducted independently by two researchers, according to the procedures adopted by PRISMA, in the electronic databases MEDLINE via PubMed, ScienceDirect, Web of Science, LILACS and SciELO, for articles published until September 2017 in English and Portuguese. The inclusion criteria were: original studies, abstract available, using predictive equations of VO2peak through 20m-SRT, conducted with adolescents and/or children, non-athletes, and mentioning correlation analysis between predicted and measured VO2peak. The level of evidence of equations was based on the risk of bias of the studies using the following criteria: sample number, sample characteristics, and statistical analysis. Data synthesis: Eighteen studies were selected, in which fifteen equations were found and analyzed. The studies had been conducted with samples composed of subjects of both sexes, aged 8 to 19 years. Equations of Léger and Matsuzaka had their level of evidence classified as high, and estimation ranged between r=0.54-0.90 and r=0.65-0.90. Equations by Ruiz, Barnett and Matsuzaka had their level of evidence classified as moderate, and estimation ranged between r=0.75-0.96, r=0.66-0.84 and r=0.66-0.89, respectively. Conclusions: Matsuzaka’s equation presented satisfactory parameters for estimates of VO2peak in children and adolescents. Although not explored in equations, body adiposity and pubertal stage are significantly associated with cardiorespiratory fitness in children and adolescents.
DOI: 10.6084/m9.figshare.7865402.v1
title: Effect of stock density of cultured Amazon Apple Snail Pomacea dolioides (Gastropoda: Ampullariidae) in Brazil

description: ABSTRACT This study evaluated the biomass gain, specific growth rate, absolute weight gain, and survival rate of the gastropod Pomacea dolioides cultivated in different stocking densities. To perform the experiment, samples were collected in March and June 2015. A total of 40 adult specimens were collected in the Jauary neighborhood (03°08′19.9"S, 58°27′32.5"W), municipality of Itacoatiara, AM, Brazil. They were kept in the laboratory for breeding to obtain the young P. dolioides, which were distributed into tanks containing 4 L of water and an aeration system, in three densities: 2.5 animals/L, 5 animals/L, and 10 animals/L, and were fed fish ration (34% gross protein). The specimens were measured for shell length and weight every fifteen days. The survival rate did not differ between treatments 2.5 and 5 animals/L (100%) and 10 animals/L (95.83%). The density with the best cultivation results was 2.5 animals/L, being most effective for the parameters of growth, weight gain, specific growth rate, and percentage weight gain, when compared with the other treatments after 225 days of the experiment. For future cultivation of this species, a density of 2.5 animals/L should be used to improve handling performance.
DOI: 10.6084/m9.figshare.7865405.v1
title: Linkage disequilibrium and past effective population size in native Tunisian cattle

description: Abstract To carry out effective genome-wide association studies, information about linkage disequilibrium (LD) is essential. Here, we used medium-density SNP chips to provide estimates of LD in native Tunisian cattle. The two measures of LD that were used, mean r2 and D’, decreased from 0.26 to 0.05 and from 0.73 to 0.40, respectively, when the distance between markers increased from less than 20 Kb to 200 Kb. The decay in LD over physical distance occurred at a faster rate than that reported for European and other indigenous breeds, and reached background levels at less than 500 Kb distance. This is consistent with the absence of strong selective pressure within the Tunisian population and suggests that, in order to be effective, any potential genome-wide association mapping studies will need to use chips with higher marker density. An analysis of effective population size (Ne) based on LD data showed a decline in past Ne, with a sudden drop starting about eight generations ago. This finding, combined with the high levels of recent inbreeding revealed by runs of homozygosity (ROH) analysis, indicate that this population is endangered and may be in urgent need of a conservation plan that includes a well-designed genetic management program.
DOI: 10.5281/zenodo.4004377
title: Increasing N content in GaNAsP nanowires suppresses the impact of polytypism on luminescence

description: Cathodoluminescence (CL) and micro-photoluminescence spectroscopies are employed to investigate effects of structural defects on carrier recombination in GaNAsP nanowires (NWs) grown by molecular beam epitaxy on Si substrates. In the NWs with a low N content of 0.08%, these defects are found to promote non-radiative (NR) recombination, which causes spatial variation of the CL peak position and its intensity. Unexpectedly, these detrimental effects can be suppressed even by a small increase in the nitrogen composition from 0.08% to 0.12%. This is attributed to more efficient trapping of excited carriers/excitons to the localized states promoted by N-induced localization and also the presence of other NR channels. At room temperature, the structural defects no longer dominate in carrier recombination even in the NWs with the lower nitrogen content, likely due to increasing importance of other recombination channels. Our work underlines the need in eliminating important thermally activated NR defects, other than the structural defects, for future optoelectronic applications of these NWs.
description: Financial support by Linköping University through the Professor Contracts, the Swedish Research Council (Grant No. 2016-05091), the Swedish Energy Agency (Grant No. P40119-1) and the Swedish Government Strategic Research Area in Materials Science on Functional Materials at Linköping University (Faculty Grant SFO-Mat-LiU No 2009 00971) is greatly appreciated. AFiM and LF thank funding from the Swiss National Foundation through the NCCR QSIT.
DOI: 10.6084/m9.figshare.7865378
title: Dataset for: Very Low Temperature Dynamic 29Si NMR Study of the Conformational Equilibrium of (1,1'-Phenyl-1,1'-silacyclohex-1-yl)disiloxane

description: The conformational equilibrium of (1,1'-phenyl-1,1'-silacyclohex-1-yl)disiloxane has been studied by very low temperature 29Si NMR spectroscopy while both 1H and 13C NMR spectroscopy along the same temperature range failed. The barrier to six-membered ring interconversion ΔG#/kcal/mol and the conformational equilibrium of the ax-ax, ax-eq and eq-eq conformers could be analyzed. Both assignment of the 29Si signals and quantification of the conformational equilibrium is supported by MP2 and DFT calculations.
DOI: 10.6084/m9.figshare.7865378.v1
title: Dataset for: Very Low Temperature Dynamic 29Si NMR Study of the Conformational Equilibrium of (1,1'-Phenyl-1,1'-silacyclohex-1-yl)disiloxane

description: The conformational equilibrium of (1,1'-phenyl-1,1'-silacyclohex-1-yl)disiloxane has been studied by very low temperature 29Si NMR spectroscopy while both 1H and 13C NMR spectroscopy along the same temperature range failed. The barrier to six-membered ring interconversion ΔG#/kcal/mol and the conformational equilibrium of the ax-ax, ax-eq and eq-eq conformers could be analyzed. Both assignment of the 29Si signals and quantification of the conformational equilibrium is supported by MP2 and DFT calculations.
DOI: 10.6084/m9.figshare.7865396.v1
title: PREDICTIVE EQUATIONS OF MAXIMUM OXYGEN CONSUMPTION BY SHUTTLE RUN TEST IN CHILDREN AND ADOLESCENTS: A SYSTEMATIC REVIEW

description: ABSTRACT Objective: To systematically review the literature as for the level of evidence of predictive equations of VO2peak through the 20-meter shuttle run test (20m-SRT) in children and adolescents. Data sources: Searches were conducted independently by two researchers, according to the procedures adopted by PRISMA, in the electronic databases MEDLINE via PubMed, ScienceDirect, Web of Science, LILACS and SciELO, for articles published until September 2017 in English and Portuguese. The inclusion criteria were: original studies, abstract available, using predictive equations of VO2peak through 20m-SRT, conducted with adolescents and/or children, non-athletes, and mentioning correlation analysis between predicted and measured VO2peak. The level of evidence of equations was based on the risk of bias of the studies using the following criteria: sample number, sample characteristics, and statistical analysis. Data synthesis: Eighteen studies were selected, in which fifteen equations were found and analyzed. The studies had been conducted with samples composed of subjects of both sexes, aged 8 to 19 years. Equations of Léger and Matsuzaka had their level of evidence classified as high, and estimation ranged between r=0.54-0.90 and r=0.65-0.90. Equations by Ruiz, Barnett and Matsuzaka had their level of evidence classified as moderate, and estimation ranged between r=0.75-0.96, r=0.66-0.84 and r=0.66-0.89, respectively. Conclusions: Matsuzaka’s equation presented satisfactory parameters for estimates of VO2peak in children and adolescents. Although not explored in equations, body adiposity and pubertal stage are significantly associated with cardiorespiratory fitness in children and adolescents.