cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3994926
title: Confocal data of Captopus depressiceps, Electrothroscus yanpingae, and Pseudopactopus robustus

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices for the specimens of <em>Captopus depressiceps</em> (NIGP173915), <em>Electrothroscus yanpingae</em> (NIGP173916) and <em>Pseudopactopus robustus</em> (NIGP173917 and NIGP173918) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "New genera and species of the family Throscidae (Coleoptera: Elateroidea) in mid-Cretaceous Burmese amber" (DOI:10.3390/insects12010063). Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using 488 nm Argon laser excitation line. Both original CZI files and exported TIFF stacks are provided.
DOI: 10.6084/m9.figshare.13203683
title: The fast response of the atmospheric water cycle to anthropogenic black carbon aerosols during summer in East Asia

description: The TXT files are black carbon (BC) observation datasets. The CESM1 simulated results and other used data are uploaded in NC formate files and the detailed descriptions of variabilities can be found in these NC files.
DOI: 10.6084/m9.figshare.13203683.v1
title: The fast response of the atmospheric water cycle to anthropogenic black carbon aerosols during summer in East Asia

description: The TXT files are black carbon (BC) observation datasets. The CESM1 simulated results and other used data are uploaded in NC formate files and the detailed descriptions of variabilities can be found in these NC files.
DOI: 10.5281/zenodo.4437730
title: ASFI Sustainability Data

description: ASFI Sustainability Data.
DOI: 10.5281/zenodo.4437729
title: ASFI Sustainability Data

description: ASFI Sustainability Data.
DOI: 10.17632/8mpfv83rs4.1
title: Data for: Cannibalization of a late Cambrian backarc in southern Peru: new insights into the assembly of southwestern Gondwana

description: Section S1. Detailed zircon U-Pb Geochronology Methods Table S1. Formalization of the Llallahue Formation, a new lithostratigraphic formation in southern Peru Table S2. Formalization of the Umachiri Formation, a new lithostratigraphic formation in southern Peru Table S3. LA-ICPMS U-Pb zircon data from Umachiri, Ollantaytambo, and Huaccaccane in southern Peru Table S4. CA-ID-TIMS U-Pb zircon data from Umachiri and Ollantaytambo in southern Peru Table S5. Whole Rock trace element geochemistry from the Umachiri Fm, southern Peru Figure S1. Cathodoluminescence (CL) images of zircons from Umachiri, Ollantaytambo, and Huaccaccane: southern Peru
DOI: 10.17632/y6wm7tyg3x.1
title: Data for: Scheduling of field service resources in cloud manufacturing based on multi-population competitive-cooperative GWO

description: Algorithm and experiment results of "Scheduling of field service resources in cloud manufacturing based on multi-population competitive-cooperative GWO".
DOI: 10.6084/m9.figshare.12301937
title: Parental migration and psychological well-being of left-behind adolescents in Western Nepal

description: The data set consists of data from adolescents in 8 schools of two districts in Western Nepal.
DOI: 10.6084/m9.figshare.13557809.v1
title: strippedcameodatamain.p

description: Data files for the COINE 2020 Paper - "Mining International Political Norms from the GDELT Database".This file contains bilateral event government event sequences extracted from the GDELT database for the period 19 June 2018 to 20 June 2019<br><br><br>Code repository can be found here - https://bitbucket.org/SuraviMsc/suravi-msc-python/src/master/<br>
DOI: 10.6084/m9.figshare.13557809.v2
title: Bilateral event government event sequences extracted from the GDELT database for the period 19 June 2018 to 20 June 2019

description: Data files for the COINE 2020 Paper - "Mining International Political Norms from the GDELT Database".This file contains bilateral event government event sequences extracted from the GDELT database for the period 19 June 2018 to 20 June 2019<br><br><br>Code repository can be found here - https://bitbucket.org/SuraviMsc/suravi-msc-python/src/master/<br>
DOI: 10.6084/m9.figshare.13557809.v3
title: Bilateral Government Event Sequences Extracted From the GDELT Database for the Period 19 June 2018 to 20 June 2019

description: Data files for the COINE 2020 Paper - "Mining International Political Norms from the GDELT Database".This file contains bilateral government event sequences extracted from the GDELT database for the period 19 June 2018 to 20 June 2019<br><br><br>Code repository can be found here - https://bitbucket.org/SuraviMsc/suravi-msc-python/src/master/<br>
DOI: 10.25952/5fffc354212c6
title: Work Climate: Implications for Pro-Environmental Behavior, Workplace Engagement, and Recruitment

description: This dataset concerns the influence of work values and personal values on worker motivation and engagement and includes data on activity by individuals and organizations to protect the environment. The dataset includes files measuring work climate, supervisor autonomy support, environmental worldview, motivation for pro-environmental behavior, workplace and non-workplace pro-environmental behavior, intrinsic need satisfaction, work and job withdrawal, organization attractiveness, and self-transcendent and self-enhancement values.
DOI: 10.5281/zenodo.4433003
title: A novel phosphoproteomic landscape evoked in response to type I interferon in the brain and in glial cells

description: Type I interferons (IFN-I) are key responders to central nervous system infection and injury. They mediate their effects primarily via transcriptional regulation of several hundred interferon-regulated genes. Using a mouse model for IFN-I-induced neurodegeneration, we identified widespread protein phosphorylation as a new mechanism by which IFN-I mediate their effects. Protein phosphorylation aligned with the clinical hallmarks and pathological outcome, including impaired development, motor dysfunction and seizures. <em>In vitro</em> experiments revealed extensive and rapid IFN-I-induced protein phosphorylation in microglia and astrocytes, the brain’s primary IFN-I-responding cells. Response to acute IFN-I stimulation was independent of gene expression and mediated by a small number of kinase families. The changes in the phosphoproteome affected a diverse range of cellular processes and functional analysis suggested that this response induced an immediate reactive state and prepared cells for subsequent transcriptional responses. Our studies reveal a hitherto unappreciated role for changes in the protein phosphorylation landscape in cellular responses to IFN-I and thus provide insights for novel diagnostic and therapeutic strategies for neurological diseases caused by IFN-I.
description: Running title: Protein phosphorylation regulates IFN-I responses
DOI: 10.5281/zenodo.4433002
title: A novel phosphoproteomic landscape evoked in response to type I interferon in the brain and in glial cells

description: Type I interferons (IFN-I) are key responders to central nervous system infection and injury. They mediate their effects primarily via transcriptional regulation of several hundred interferon-regulated genes. Using a mouse model for IFN-I-induced neurodegeneration, we identified widespread protein phosphorylation as a new mechanism by which IFN-I mediate their effects. Protein phosphorylation aligned with the clinical hallmarks and pathological outcome, including impaired development, motor dysfunction and seizures. <em>In vitro</em> experiments revealed extensive and rapid IFN-I-induced protein phosphorylation in microglia and astrocytes, the brain’s primary IFN-I-responding cells. Response to acute IFN-I stimulation was independent of gene expression and mediated by a small number of kinase families. The changes in the phosphoproteome affected a diverse range of cellular processes and functional analysis suggested that this response induced an immediate reactive state and prepared cells for subsequent transcriptional responses. Our studies reveal a hitherto unappreciated role for changes in the protein phosphorylation landscape in cellular responses to IFN-I and thus provide insights for novel diagnostic and therapeutic strategies for neurological diseases caused by IFN-I.
description: Running title: Protein phosphorylation regulates IFN-I responses
DOI: 10.6084/m9.figshare.13543726.v1
title: Additional file 1 of Gene expression patterns of red sea urchins (Mesocentrotus franciscanus) exposed to different combinations of temperature and pCO2 during early development

description: Additional file 1. Summary RNA-seq statistics of all samples.
DOI: 10.6084/m9.figshare.13571918.v1
title: Additional file 1 of The prevalence, risk factors, and prognostic value of venous thromboembolism in ovarian cancer patients receiving chemotherapy: a systematic review and meta-analysis

description: Additional file 1. The detailed search strategy.
DOI: 10.6084/m9.figshare.13543726
title: Additional file 1 of Gene expression patterns of red sea urchins (Mesocentrotus franciscanus) exposed to different combinations of temperature and pCO2 during early development

description: Additional file 1. Summary RNA-seq statistics of all samples.
DOI: 10.6084/m9.figshare.13543732.v1
title: Additional file 3 of Gene expression patterns of red sea urchins (Mesocentrotus franciscanus) exposed to different combinations of temperature and pCO2 during early development

description: Additional file 3. Lists of genes within each principal component that are significantly correlated to a metadata variable, and lists of genes that are significantly differentially expressed due to temperature or pCO2 experiment treatments.
DOI: 10.6084/m9.figshare.13571918
title: Additional file 1 of The prevalence, risk factors, and prognostic value of venous thromboembolism in ovarian cancer patients receiving chemotherapy: a systematic review and meta-analysis

description: Additional file 1. The detailed search strategy.
DOI: 10.6084/m9.figshare.13543732
title: Additional file 3 of Gene expression patterns of red sea urchins (Mesocentrotus franciscanus) exposed to different combinations of temperature and pCO2 during early development

description: Additional file 3. Lists of genes within each principal component that are significantly correlated to a metadata variable, and lists of genes that are significantly differentially expressed due to temperature or pCO2 experiment treatments.
DOI: 10.21227/jfzm-xq76
title: Supplementary materials for Meta-Path Based Gene Ontology Profiles for Predicting Drug-Disease Associations

description: This file contains the supplementary materials of the paper entitled "Meta-Path Based Gene Ontology Profiles for Predicting Drug-Disease Associations".
DOI: 10.21227/t4tz-5a31
title: Supplementary materials for Meta-Path Based Gene Ontology Profiles for Predicting Drug-Disease Associations

description: This file contains the supplementary materials of the paper entitled "Meta-Path Based Gene Ontology Profiles for Predicting Drug-Disease Associations".
DOI: 10.6084/m9.figshare.13543967
title: Additional file 4 of Hepatic transcriptome perturbations in dairy cows fed different forage resources

description: Additional file 4. The table containing the statistically significant correlations across the whole data set for every pair of DEGs.
DOI: 10.6084/m9.figshare.13543964.v1
title: Additional file 3 of Hepatic transcriptome perturbations in dairy cows fed different forage resources

description: Additional file 3. Output of Database for Annotation, Visualization and Integrated Discovery (DAVID) analysis of the DEG.
DOI: 10.6084/m9.figshare.13543955.v1
title: Additional file 2 of Hepatic transcriptome perturbations in dairy cows fed different forage resources

description: Additional file 2. Output of Dynamic Impact Approach (DIA) analysis of the DEG.
DOI: 10.6084/m9.figshare.13543967.v1
title: Additional file 4 of Hepatic transcriptome perturbations in dairy cows fed different forage resources

description: Additional file 4. The table containing the statistically significant correlations across the whole data set for every pair of DEGs.
DOI: 10.6084/m9.figshare.13543952.v1
title: Additional file 1 of Hepatic transcriptome perturbations in dairy cows fed different forage resources

description: Additional file 1. Dataset of differently expressed genes (DEG) of CS vs. MF.
DOI: 10.6084/m9.figshare.13543955
title: Additional file 2 of Hepatic transcriptome perturbations in dairy cows fed different forage resources

description: Additional file 2. Output of Dynamic Impact Approach (DIA) analysis of the DEG.
DOI: 10.6084/m9.figshare.13543952
title: Additional file 1 of Hepatic transcriptome perturbations in dairy cows fed different forage resources

description: Additional file 1. Dataset of differently expressed genes (DEG) of CS vs. MF.
DOI: 10.6084/m9.figshare.13543964
title: Additional file 3 of Hepatic transcriptome perturbations in dairy cows fed different forage resources

description: Additional file 3. Output of Database for Annotation, Visualization and Integrated Discovery (DAVID) analysis of the DEG.
DOI: 10.6084/m9.figshare.13543970
title: Additional file 5 of Hepatic transcriptome perturbations in dairy cows fed different forage resources

description: Additional file 5. Co-expression network statistics including correlation of the DEGs, the degree and betweenness centrality of the nodes.
DOI: 10.6084/m9.figshare.13543970.v1
title: Additional file 5 of Hepatic transcriptome perturbations in dairy cows fed different forage resources

description: Additional file 5. Co-expression network statistics including correlation of the DEGs, the degree and betweenness centrality of the nodes.
DOI: 10.6084/m9.figshare.13571999
title: Additional file 2 of Different genome-wide transcriptome responses of Nocardioides simplex VKM Ac-2033D to phytosterol and cortisone 21-acetate

description: Additional file 2: Supplementary Table S4. DEGs and operons.
DOI: 10.6084/m9.figshare.13571999.v1
title: Additional file 2 of Different genome-wide transcriptome responses of Nocardioides simplex VKM Ac-2033D to phytosterol and cortisone 21-acetate

description: Additional file 2: Supplementary Table S4. DEGs and operons.
DOI: 10.6084/m9.figshare.13550718
title: Additional file 1 of Interaction study of Pasteurella multocida with culturable aerobic bacteria isolated from porcine respiratory tracts using coculture in conditioned media

description: Additional file 1. Details of bacterial isolates. Characteristics and identification of 116 bacterial isolates obtained from the porcine respiratory tracts. Bacterial identification was done by 16S rRNA seqeunce analysis.
DOI: 10.6084/m9.figshare.13550718.v1
title: Additional file 1 of Interaction study of Pasteurella multocida with culturable aerobic bacteria isolated from porcine respiratory tracts using coculture in conditioned media

description: Additional file 1. Details of bacterial isolates. Characteristics and identification of 116 bacterial isolates obtained from the porcine respiratory tracts. Bacterial identification was done by 16S rRNA seqeunce analysis.
DOI: 10.6084/m9.figshare.13549849
title: Additional file 3 of Genome-wide identification of the 14–3-3 gene family and its participation in floral transition by interacting with TFL1/FT in apple

description: Additional file 3: Table S1. The gene name and gene ID of 14-3-3s in apple and other plant species.
DOI: 10.6084/m9.figshare.13549849.v1
title: Additional file 3 of Genome-wide identification of the 14–3-3 gene family and its participation in floral transition by interacting with TFL1/FT in apple

description: Additional file 3: Table S1. The gene name and gene ID of 14-3-3s in apple and other plant species.
DOI: 10.6084/m9.figshare.13549855
title: Additional file 5 of Genome-wide identification of the 14–3-3 gene family and its participation in floral transition by interacting with TFL1/FT in apple

description: Additional file 5: Table S3. FPKM values of Md14-3-3s from RNA-seq statistics during floral transition in 6-BA, glucose and sucrose treatment.
DOI: 10.6084/m9.figshare.13549858.v1
title: Additional file 6 of Genome-wide identification of the 14–3-3 gene family and its participation in floral transition by interacting with TFL1/FT in apple

description: Additional file 6: Table S4. Primers used in the present study.
DOI: 10.6084/m9.figshare.13549852.v1
title: Additional file 4 of Genome-wide identification of the 14–3-3 gene family and its participation in floral transition by interacting with TFL1/FT in apple

description: Additional file 4: Table S2. Analysis of the cis-elements in the Md14-3-3 promoter. The 2,000bp upstream from the start codon of Md14-3-3 genes were analyzed using the PlantCARE database.
DOI: 10.6084/m9.figshare.13549855.v1
title: Additional file 5 of Genome-wide identification of the 14–3-3 gene family and its participation in floral transition by interacting with TFL1/FT in apple

description: Additional file 5: Table S3. FPKM values of Md14-3-3s from RNA-seq statistics during floral transition in 6-BA, glucose and sucrose treatment.
DOI: 10.6084/m9.figshare.13549858
title: Additional file 6 of Genome-wide identification of the 14–3-3 gene family and its participation in floral transition by interacting with TFL1/FT in apple

description: Additional file 6: Table S4. Primers used in the present study.
DOI: 10.6084/m9.figshare.13549852
title: Additional file 4 of Genome-wide identification of the 14–3-3 gene family and its participation in floral transition by interacting with TFL1/FT in apple

description: Additional file 4: Table S2. Analysis of the cis-elements in the Md14-3-3 promoter. The 2,000bp upstream from the start codon of Md14-3-3 genes were analyzed using the PlantCARE database.
DOI: 10.6084/m9.figshare.13532897.v1
title: Additional file 2 of MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes

description: Additional file 2. Tables with genomes used in this study and annotation result summaries for each tool tested.
DOI: 10.6084/m9.figshare.13532897
title: Additional file 2 of MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes

description: Additional file 2. Tables with genomes used in this study and annotation result summaries for each tool tested.
DOI: 10.6084/m9.figshare.13558660
title: Additional file 2 of Magnaporthe oryzae systemic defense trigger 1 (MoSDT1)-mediated metabolites regulate defense response in Rice

description: Additional file 2: Table S1.
DOI: 10.6084/m9.figshare.13558684
title: Additional file 9 of Magnaporthe oryzae systemic defense trigger 1 (MoSDT1)-mediated metabolites regulate defense response in Rice

description: Additional file 9.
DOI: 10.6084/m9.figshare.13558684.v1
title: Additional file 9 of Magnaporthe oryzae systemic defense trigger 1 (MoSDT1)-mediated metabolites regulate defense response in Rice

description: Additional file 9.
DOI: 10.6084/m9.figshare.13558660.v1
title: Additional file 2 of Magnaporthe oryzae systemic defense trigger 1 (MoSDT1)-mediated metabolites regulate defense response in Rice

description: Additional file 2: Table S1.
DOI: 10.6084/m9.figshare.13550773
title: Additional file 3 of Identification and fine mapping of qGR6.2, a novel locus controlling rice seed germination under salt stress

description: Additional file 3: Table S2. Primers of PCR-based markers used for validation and fine mapping qGR6.2.
DOI: 10.6084/m9.figshare.13550776.v1
title: Additional file 4 of Identification and fine mapping of qGR6.2, a novel locus controlling rice seed germination under salt stress

description: Additional file 4: Table S3. Primers for expression pattern analysis of candidate genes by real-time PCR (RT-qPCR).
DOI: 10.6084/m9.figshare.13550770
title: Additional file 2 of Identification and fine mapping of qGR6.2, a novel locus controlling rice seed germination under salt stress

description: Additional file 2: Table S1. Summary of 157 pairs of polymorphic SSR or InDel markers between WJZ and Nip.
DOI: 10.6084/m9.figshare.13550773.v1
title: Additional file 3 of Identification and fine mapping of qGR6.2, a novel locus controlling rice seed germination under salt stress

description: Additional file 3: Table S2. Primers of PCR-based markers used for validation and fine mapping qGR6.2.
DOI: 10.6084/m9.figshare.13550770.v1
title: Additional file 2 of Identification and fine mapping of qGR6.2, a novel locus controlling rice seed germination under salt stress

description: Additional file 2: Table S1. Summary of 157 pairs of polymorphic SSR or InDel markers between WJZ and Nip.
DOI: 10.6084/m9.figshare.13550776
title: Additional file 4 of Identification and fine mapping of qGR6.2, a novel locus controlling rice seed germination under salt stress

description: Additional file 4: Table S3. Primers for expression pattern analysis of candidate genes by real-time PCR (RT-qPCR).
DOI: 10.6084/m9.figshare.13544632
title: Additional file 10 of Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

description: Additional file 10: Table S3. CpG sites that showed a differential change between time point 2 and 3 in either RBCs, liver or in both tissues.
DOI: 10.6084/m9.figshare.13544638
title: Additional file 12 of Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

description: Additional file 12: Table S5. Genes covered by tissue-general and tissue-general changing DMS, or both.
DOI: 10.6084/m9.figshare.13544644.v1
title: Additional file 14 of Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

description: Additional file 14: Table S7. Number of CpG sites found within individual genes.
DOI: 10.6084/m9.figshare.13544632.v1
title: Additional file 10 of Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

description: Additional file 10: Table S3. CpG sites that showed a differential change between time point 2 and 3 in either RBCs, liver or in both tissues.
DOI: 10.6084/m9.figshare.13544635.v1
title: Additional file 11 of Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

description: Additional file 11: Table S4. Number of DMS in the set of CpG sites overlapping between liver and RBCs, in promoters and TSS, that showed a differential change between time point 1 and 2, and time point 2 and 3.
DOI: 10.6084/m9.figshare.13544644
title: Additional file 14 of Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

description: Additional file 14: Table S7. Number of CpG sites found within individual genes.
DOI: 10.6084/m9.figshare.13544635
title: Additional file 11 of Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

description: Additional file 11: Table S4. Number of DMS in the set of CpG sites overlapping between liver and RBCs, in promoters and TSS, that showed a differential change between time point 1 and 2, and time point 2 and 3.
DOI: 10.6084/m9.figshare.13544647.v1
title: Additional file 15 of Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

description: Additional file 15: Table S8. Correlations between the change in individual gene expression and change in methylation for both promoter and TSS regions. P-values were corrected (p-adjusted) with the Benjamini-Hochberg procedure.
DOI: 10.6084/m9.figshare.13544647
title: Additional file 15 of Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

description: Additional file 15: Table S8. Correlations between the change in individual gene expression and change in methylation for both promoter and TSS regions. P-values were corrected (p-adjusted) with the Benjamini-Hochberg procedure.