cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8532xrbkhk.2
title: Trihelota, a new and unusual helotid beetle genus from mid-Cretaceous Burmese amber (Coleoptera: Helotidae)
DOI: 10.5281/zenodo.4035918
title: MBTR_QM9

description: MBTR and HOMO values for QM9 MBTR using only K2 and sigma = 0.1
DOI: 10.5281/zenodo.4019088
title: MBTR_QM9

description: MBTR and HOMO values for QM9 MBTR using only K2 and sigma = 0.1
DOI: 10.5281/zenodo.4035923
title: MBTR_OE62

description: MBTR and HOMO values for OE62 mbtr_0.02.npz : Contains the MBTR K2 values (sigma2 value in filename) Files were from : HOMO.txt : /scratch/project_2000382/astuke/learning_curves/64k/data/HOMO.txt data.xyz : /scratch/project_2000382/astuke/learning_curves/64k/data/data.xyz mbtr : /scratch/project_2000382/astuke/learning_curves/64k/data/mbtr/k2/mbtr_0.02.npz
DOI: 10.5281/zenodo.4019092
title: MBTR_OE62

description: MBTR and HOMO values for OE62 mbtr_0.02.npz : Contains the MBTR K2 values (sigma2 value in filename) Files were from : HOMO.txt : /scratch/project_2000382/astuke/learning_curves/64k/data/HOMO.txt data.xyz : /scratch/project_2000382/astuke/learning_curves/64k/data/data.xyz mbtr : /scratch/project_2000382/astuke/learning_curves/64k/data/mbtr/k2/mbtr_0.02.npz
DOI: 10.6084/m9.figshare.12852963
title: Glucose limitation and <i>pka1</i> deletion rescue aberrant mitotic spindle formation induced by Mal3 overexpression in <i>Schizosaccharomyces pombe</i>

description: The cAMP-dependent protein kinase Pka1 is known as a regulator of glycogenesis, transition into meiosis, proper chromosome segregation, and stress responses in <i>Schizosaccharomyces pombe</i>. We demonstrated that both the cAMP/PKA pathway and glucose limitation play roles in appropriate spindle formation. Overexpression of Mal3 (1–308), an EB1 family protein, caused growth defects, increased 4C DNA content, and induced monopolar spindle formation. Overproduction of a high-affinity microtubule binding mutant (Q89R) and a recombinant protein possessing the CH and EB1 domains (1–241) both resulted in more severe phenotypes than Mal3 (1–308). Loss of functional Pka1 and glucose limitation rescued the phenotypes of Mal3-overexpressing cells, whereas deletion of Tor1 or Ssp2 did not. Growth defects and monopolar spindle formation in a kinesin-5 mutant, <i>cut7-446</i>, was partially rescued by <i>pka1</i> deletion or glucose limitation. These findings suggest that Pka1 and glucose limitation regulate proper spindle formation in Mal3-overexpressing cells and the <i>cut7-446</i> mutant. Graphical abstract The loss of functional Pka1 or glucose limitation rescues monopolar spindle formation and the growth defects in Mal3-overexpressing cells and the <i>cut7-446</i> mutant.
DOI: 10.6084/m9.figshare.12852966.v1
title: Effect of <i>koji</i> starter on metabolites in Japanese alcoholic beverage sake made from the sake rice <i>Koshitanrei</i>

description: In sake brewing, the steamed rice is used in 2 ways, added to sake-mash and making rice<i>-koji</i>. Rice-<i>koji</i> is made from the steamed rice by using <i>koji</i> starter, and its quality is an important determinant of the aroma/taste of sake. The sake rice <i>Koshitanrei</i> (KOS) was developed in Niigata Prefecture by crossing 2 sake rice varieties, <i>Gohyakumangoku</i> and <i>Yamadanishiki</i>. Recently, we reported the characteristic components/metabolites in sake made from KOS by conducting metabolome analysis using UPLC-QTOF-MS. In this study, to investigate the effect of <i>koji</i> starter and sake rice cultivars on the sake metabolites, we performed small-scale sake-making tests using the above 3 rice cultivars and 3 <i>koji</i> starters. Finally, we demonstrated that some of the characteristic components/metabolites of sake from KOS are affected by the <i>koji</i> starter. Thus, in addition to rice cultivar, <i>koji</i> starter plays an important role for establishment/maintenance of the quality of the final product. Metabolites in sake affect the taste and aroma. Specific metabolites of sake from Koshitanrei are affected by koji starter were identified by sake metabolome analysis method.
DOI: 10.6084/m9.figshare.12852963.v1
title: Glucose limitation and <i>pka1</i> deletion rescue aberrant mitotic spindle formation induced by Mal3 overexpression in <i>Schizosaccharomyces pombe</i>

description: The cAMP-dependent protein kinase Pka1 is known as a regulator of glycogenesis, transition into meiosis, proper chromosome segregation, and stress responses in <i>Schizosaccharomyces pombe</i>. We demonstrated that both the cAMP/PKA pathway and glucose limitation play roles in appropriate spindle formation. Overexpression of Mal3 (1–308), an EB1 family protein, caused growth defects, increased 4C DNA content, and induced monopolar spindle formation. Overproduction of a high-affinity microtubule binding mutant (Q89R) and a recombinant protein possessing the CH and EB1 domains (1–241) both resulted in more severe phenotypes than Mal3 (1–308). Loss of functional Pka1 and glucose limitation rescued the phenotypes of Mal3-overexpressing cells, whereas deletion of Tor1 or Ssp2 did not. Growth defects and monopolar spindle formation in a kinesin-5 mutant, <i>cut7-446</i>, was partially rescued by <i>pka1</i> deletion or glucose limitation. These findings suggest that Pka1 and glucose limitation regulate proper spindle formation in Mal3-overexpressing cells and the <i>cut7-446</i> mutant. Graphical abstract The loss of functional Pka1 or glucose limitation rescues monopolar spindle formation and the growth defects in Mal3-overexpressing cells and the <i>cut7-446</i> mutant.
DOI: 10.6084/m9.figshare.12852966
title: Effect of <i>koji</i> starter on metabolites in Japanese alcoholic beverage sake made from the sake rice <i>Koshitanrei</i>

description: In sake brewing, the steamed rice is used in 2 ways, added to sake-mash and making rice<i>-koji</i>. Rice-<i>koji</i> is made from the steamed rice by using <i>koji</i> starter, and its quality is an important determinant of the aroma/taste of sake. The sake rice <i>Koshitanrei</i> (KOS) was developed in Niigata Prefecture by crossing 2 sake rice varieties, <i>Gohyakumangoku</i> and <i>Yamadanishiki</i>. Recently, we reported the characteristic components/metabolites in sake made from KOS by conducting metabolome analysis using UPLC-QTOF-MS. In this study, to investigate the effect of <i>koji</i> starter and sake rice cultivars on the sake metabolites, we performed small-scale sake-making tests using the above 3 rice cultivars and 3 <i>koji</i> starters. Finally, we demonstrated that some of the characteristic components/metabolites of sake from KOS are affected by the <i>koji</i> starter. Thus, in addition to rice cultivar, <i>koji</i> starter plays an important role for establishment/maintenance of the quality of the final product. Metabolites in sake affect the taste and aroma. Specific metabolites of sake from Koshitanrei are affected by koji starter were identified by sake metabolome analysis method.
DOI: 10.25405/data.ncl.12965051
title: Data-CEJ-388, 2020 124176.xlsx

description: Data for the figures<br>This study presents a steady state, two dimensional mathematical model of microbial fuel cells (MFCs) developed by coupling mass, charge and energy balance with the bioelectrochemical reactions. The model parameters are estimated and validated using experimental results obtained from five air-cathode MFCs operated at different temperatures. Model analysis correctly predicts the nonlinear performance trend of MFCs with temperatures ranging between 20 °C and 40 °C. The two dimensional distribution allows the computation of local current density and reaction rates in the biofilm, helping to correctly capture the interdependence of system variables and predict the drop in power density at higher temperatures. Model applicability for parametric analysis and process optimization is further highlighted by studying the effect of electrode spacing and ionic strength on MFC performance.
DOI: 10.25405/data.ncl.12965051.v1
title: Data-CEJ-388, 2020 124176.xlsx

description: Data for the figures<br>This study presents a steady state, two dimensional mathematical model of microbial fuel cells (MFCs) developed by coupling mass, charge and energy balance with the bioelectrochemical reactions. The model parameters are estimated and validated using experimental results obtained from five air-cathode MFCs operated at different temperatures. Model analysis correctly predicts the nonlinear performance trend of MFCs with temperatures ranging between 20 °C and 40 °C. The two dimensional distribution allows the computation of local current density and reaction rates in the biofilm, helping to correctly capture the interdependence of system variables and predict the drop in power density at higher temperatures. Model applicability for parametric analysis and process optimization is further highlighted by studying the effect of electrode spacing and ionic strength on MFC performance.
DOI: 10.6084/m9.figshare.12967169
title: GLRE_bert

description: GLRE
DOI: 10.6084/m9.figshare.12973019
title: Supplementary Material for: The Impact of Smoking Cessation and Continuation on Recurrence and Survival in Patients with Head and Neck Cancer: A Systematic Review of the Literature

description: <b><i>Background:</i></b> The impact of smoking continuation or cessation on the outcome of head and neck cancer (HNC) patients concerning recurrence and survival rates is not well understood. We aimed to analyze the prognostic role of smoking habits in patients with newly diagnosed HNC and the effects on survival, recurrence rates, and second primary tumor (SPT) development. <b><i>Methods:</i></b> A systematic literature review of the databases PubMed and Web of Science was performed in October 2019 using the search words “head and neck cancer” and “smoking cessation.” Articles analyzing the effects of ongoing smoking or smoking cessation in HNC patients were included. <b><i>Results:</i></b> Twelve studies published from 1993 to 2016 including 6,308 patients with HNC of stages I–IV were eligible for analysis. The median follow-up was 5 years. Six of 8 studies revealed an improved outcome concerning the median overall survival or survival rates favoring smoking cessation. Regarding recurrence rates, 5 of 6 studies indicated a statistically significant benefit associated with smoking cessation, and 2 of 3 studies showed a lower risk for SPT associated with postdiagnosis smoking cessation. <b><i>Conclusion:</i></b> Smoking cessation in patients with newly diagnosed HNC is associated with improved outcomes concerning overall survival, recurrence rates, and SPTs. Further research is needed to validate these results and to evaluate the specific effects on different tumor types and treatment approaches.
DOI: 10.6084/m9.figshare.12973019.v1
title: Supplementary Material for: The Impact of Smoking Cessation and Continuation on Recurrence and Survival in Patients with Head and Neck Cancer: A Systematic Review of the Literature

description: <b><i>Background:</i></b> The impact of smoking continuation or cessation on the outcome of head and neck cancer (HNC) patients concerning recurrence and survival rates is not well understood. We aimed to analyze the prognostic role of smoking habits in patients with newly diagnosed HNC and the effects on survival, recurrence rates, and second primary tumor (SPT) development. <b><i>Methods:</i></b> A systematic literature review of the databases PubMed and Web of Science was performed in October 2019 using the search words “head and neck cancer” and “smoking cessation.” Articles analyzing the effects of ongoing smoking or smoking cessation in HNC patients were included. <b><i>Results:</i></b> Twelve studies published from 1993 to 2016 including 6,308 patients with HNC of stages I–IV were eligible for analysis. The median follow-up was 5 years. Six of 8 studies revealed an improved outcome concerning the median overall survival or survival rates favoring smoking cessation. Regarding recurrence rates, 5 of 6 studies indicated a statistically significant benefit associated with smoking cessation, and 2 of 3 studies showed a lower risk for SPT associated with postdiagnosis smoking cessation. <b><i>Conclusion:</i></b> Smoking cessation in patients with newly diagnosed HNC is associated with improved outcomes concerning overall survival, recurrence rates, and SPTs. Further research is needed to validate these results and to evaluate the specific effects on different tumor types and treatment approaches.
DOI: 10.6084/m9.figshare.12973016
title: SierraRamos_supp.pdf

description: One pdf file containing tables with lists of differentially regulated genes from microarray analysis of kidney cortex from wild type transgenic SGK1 mice challenged with nephrectomy/DOCA/NaCl.
DOI: 10.6084/m9.figshare.12973016.v1
title: SierraRamos_supp.pdf

description: One pdf file containing tables with lists of differentially regulated genes from microarray analysis of kidney cortex from wild type transgenic SGK1 mice challenged with nephrectomy/DOCA/NaCl.
DOI: 10.25345/c5zv0t
title: MassIVE MSV000086169 - GNPS_danausplexippus_integument_girt
title: GNPS_danausplexippus_integument_girtGNPS_danausplexippus_integument_girtGNPS_danausplexippus_integument_girtGNPS_danausplexippus_integument_girtGNPS_danausplexippus_integument_girtGNPS_danausplexippus_integument_girtGNPS_danausplexippus_integument_girtGNPS_danausplexippus_integument_girt
DOI: 10.6084/m9.figshare.12973037
title: Origin and adaptive evolution of UV-B photoreceptor UVR8 and the signaling pathway during plant terrestrialization

description: multiple sequence alignments used in this study <br>
DOI: 10.6084/m9.figshare.12973037.v1
title: Origin and adaptive evolution of UV-B photoreceptor UVR8 and the signaling pathway during plant terrestrialization

description: multiple sequence alignments used in this study <br>
DOI: 10.21227/t2m1-0v85
title: New observation- C

description: This dataset is in support of my claim on an intersting observation on " " submitted to IEEE Transactions on Circuits and Systems IThe supplementary materials relevat with this paper is also submitted in the folder. It includess multimedia, gif images which are the result of the Source code is not shared but if needed can be submtted to show claim.
DOI: 10.5281/zenodo.4034268
title: How We Type: Movement Strategies and Performance in Everyday Typing

description: Tihs dataset contains motion capture, keylog, eye tracking, and video data of 30 participants, transcribing regular sentences. It is part of the following publication: Anna Maria Feit, Daryl Weir, Antti Oulasvirta. 2016.How We Type: Movement Strategies and Performance in Everyday Typing.In Proceedings of the 2016 CHI Conference on Human Factors in Computing Systems (CHI '16). ACM, New York, NY, USA, 4262-4273 The paper revisits the present understanding of typing, which originates mostly from studies of trained typists using the tenfinger touch typing system. Our goal was to characterise the majority of present-day users who are untrained and employ diverse, self-taught techniques. In a transcription task, we compared self-taught typists and those that took a touch typing course. We reported several differences in performance, gaze deployment and movement strategies. The most surprising finding was that self-taught typists can achieve performance levels comparable with touch typists, even when using fewer fingers. Motion capture data exposed 3 predictors of high performance: 1) unambiguous mapping (a letter is consistently pressed by the same finger), 2) active preparation of upcoming keystrokes, and 3) minimal global hand motion. The dataset is free for non-commercial use. Please cite the above work. Note that participants wrote in either Finnish or English.
DOI: 10.25405/data.ncl.12967661
title: JV-curves for Dyes BOD1-3

description: Current Voltage curves for dyes BOD1-3
DOI: 10.25405/data.ncl.12967661.v1
title: JV-curves for Dyes BOD1-3

description: Current Voltage curves for dyes BOD1-3
DOI: 10.25405/data.ncl.12967646
title: Electrochemistry Origin Files

description: Formatted Origin Files for Electrochemical Measurements for dyes BOD1-3
DOI: 10.25405/data.ncl.12967646.v1
title: Electrochemistry Origin Files

description: Formatted Origin Files for Electrochemical Measurements for dyes BOD1-3
DOI: 10.25405/data.ncl.12961886.v1
title: Diamond Trip 2 Data

description: Raw XPS waves recorded at Diamond Beamline - Second Trip
DOI: 10.25405/data.ncl.12961886
title: Diamond Trip 2 Data

description: Raw XPS waves recorded at Diamond Beamline - Second Trip
DOI: 10.25405/data.ncl.12961877.v1
title: Jena TA-DATA

description: Raw laser data and fitting files for TA-spectroscopy measurements carried out in Jena
DOI: 10.25405/data.ncl.12961877
title: Jena TA-DATA

description: Raw laser data and fitting files for TA-spectroscopy measurements carried out in Jena
DOI: 10.25405/data.ncl.12961880.v1
title: Diamond Trip 1 data

description: Raw XPS waves recorded at Diamond Beamline - First Trip
DOI: 10.25405/data.ncl.12961880
title: Diamond Trip 1 data

description: Raw XPS waves recorded at Diamond Beamline - First Trip
DOI: 10.6084/m9.figshare.9917255
title: The dataset of turbulent microstructure in South China Sea during 2017

description: This dataset was collected in the cruise of South China Sea founded by the National Natural Science Foundation of China during 2017. It contains 30 profiles of turbulent microstructure profiles measured by Vertical Microstructure Profiler (VMP250). In the RAR package, each MAT file, consisting of density, temperature, vertical speeds, and so on (please see the read_me.txt file), is a turbulent microstructure profile.
DOI: 10.6084/m9.figshare.9917255.v1
title: The dataset of turbulent microstructure in South China Sea during 2017

description: This dataset was collected in the cruise of South China Sea founded by the National Natural Science Foundation of China during 2017. It contains 30 profiles of turbulent microstructure profiles measured by Vertical Microstructure Profiler (VMP250). In the RAR package, each MAT file, consisting of density, temperature, vertical speeds, and so on (please see the read_me.txt file), is a turbulent microstructure profile.
DOI: 10.21227/dy3c-8481
title: New observation- C

description: This dataset is in support of my claim on an intersting observation on " " submitted to IEEE Transactions on Circuits and Systems IThe supplementary materials relevat with this paper is also submitted in the folder. It includess multimedia, gif images which are the result of the Source code is not shared but if needed can be submtted to show claim.
DOI: 10.6084/m9.figshare.12973100
title: Supplementary Material for: Efficacy and Safety of Capecitabine Alone or in Combination in Advanced Metastatic Breast Cancer Patients Previously Treated with Anthracycline and Taxane: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Capecitabine is frequently used alone or combined with other chemotherapy agents for the treatment of metastatic breast cancer in relapsed patients. <b><i>Objective:</i></b> The objective of this meta-analysis is to evaluate the effectiveness and safety of capecitabine monotherapy versus combination in the treatment of metastatic breast cancer patients pretreated with anthracycline and taxane. <b><i>Methods:</i></b> Eligible randomized controlled trials examining the efficacy and safety of capecitabine alone compared to capecitabine combination were systematically searched. Progression-free survival (PFS), overall survival (OS), overall response rate (ORR), and grades 3–4 drug-related adverse events were the outcomes assessed. <b><i>Results:</i></b> A total of 6,714 patients of 9 trials were involved in the pooled analysis. Our findings demonstrated that capecitabine combination is significantly superior to capecitabine monotherapy in improving PFS (hazard ratio [HR] 1.32, 95% CI 1.13–1.54, <i>p</i> &lt; 0.0001) and ORR (risk ratio [RR] 0.67, 95% CI 0.54–0.83, <i>p</i> &lt; 0.001), but it was insignificant in OS (HR 1.09, 95% CI 0.98–1.22, <i>p</i> = 0.12). On the other hand, the incidence of non-hematological adverse events such as hand-foot syndrome and diarrhea was lower in capecitabine combination compared to capecitabine monotherapy. <b><i>Conclusion:</i></b> Capecitabine-based combination chemotherapy showed superiority over capecitabine monotherapy in terms of PFS and ORR, with no significant difference in OS. Non-hematological adverse effects such as hand-foot syndrome were fewer with a combination regimen. However, hematological adverse events were fewer with capecitabine monotherapy regimen.
DOI: 10.5281/zenodo.4035979
title: Crafted optimization instances in OPB format.

description: Crafted optimization instances in OPB format, inspired by (Elffers et al. 2018; Vinyals et al. 2018), but generated with larger parameters so as to be more challenging, and allow us to “stress-test” the solvers by exposing them to problems that provably require sophisticated reasoning. - Elffers, J.; Giráldez-Cru, J.; Nordström, J.; and Vinyals, M. 2018. Using Combinatorial Benchmarks to Probe the Reasoning Power of Pseudo-Boolean Solvers.<br> - Vinyals, M.; Elffers, J.; Giráldez-Cru, J.; Gocht, S.; and Nordström, J. 2018. In Between Resolution and Cutting Planes: A Study of Proof Systems for Pseudo-Boolean SAT Solving.
DOI: 10.5281/zenodo.4035978
title: Crafted optimization instances in OPB format.

description: Crafted optimization instances in OPB format, inspired by (Elffers et al. 2018; Vinyals et al. 2018), but generated with larger parameters so as to be more challenging, and allow us to “stress-test” the solvers by exposing them to problems that provably require sophisticated reasoning. - Elffers, J.; Giráldez-Cru, J.; Nordström, J.; and Vinyals, M. 2018. Using Combinatorial Benchmarks to Probe the Reasoning Power of Pseudo-Boolean Solvers.<br> - Vinyals, M.; Elffers, J.; Giráldez-Cru, J.; Gocht, S.; and Nordström, J. 2018. In Between Resolution and Cutting Planes: A Study of Proof Systems for Pseudo-Boolean SAT Solving.
DOI: 10.5517/ccdc.csd.cc24v809
title: CCDC 1991440: Experimental Crystal Structure Determination

description: Related Article: Clève D. Mboyi, Ahmad Daher, Neelab Khirzada, Charles H. Devillers, Hélène Cattey, Paul Fleurat-Lessard, Julien Roger, Jean-Cyrille Hierso|2020|New J.Chem.|44|15235|doi:10.1039/D0NJ02338H
DOI: 10.5517/ccdc.csd.cc2509n5
title: CCDC 1996296: Experimental Crystal Structure Determination

description: Related Article: Roza Maouche, Sabrina Belaid, Belkacem Benmerad, Sofiane Bouacida, Carole Daiguebonne, Yan Suffren, Olivier Guillou|2021|J.Mol.Struct.|1225|129164|doi:10.1016/j.molstruc.2020.129164
DOI: 10.5517/ccdc.csd.cc254p78
title: CCDC 2000499: Experimental Crystal Structure Determination

description: Related Article: Venkatesan Srinivasan, Themmila Khamrang, Chairman Ponraj, Dhandayutham Saravanan, Rekha Yamini, Soumen Bera, Mariadoss Asha Jhonsi|2021|J.Mol.Struct.|1225|129153|doi:10.1016/j.molstruc.2020.129153