cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24424363.v1
title: <b>Table 1</b>- Morphological comparison between <i>Adiantum raddianum</i> and the six mostsimilar species reported from Honduras.

description: <b>Abstract</b><i>Adiantum raddianum</i> is reported as a new record for the Honduran Flora. This new occurrence of<i> A. raddianum</i> closes a gap of distribution between Guatemala and Nicaragua. We consider this species vegetably similar to these species of <i>Adiantum</i> in Honduras:<i> A. raddianum, A. amplum, A. andicola, A. capillus-veneris, A.concinnum, A. tenerum, and A. thalictroide</i>s. A key to related species is provided.<b>Key words</b>: distribution, ferns, Mesoamerica, taxonomy.Resumen<i>Adiantum raddianum</i> es reportado como un nuevo registro para la Flora hondureña. Esta nueva ocurrencia de<i> A. raddianum</i> cierra una brecha de distribución entre Guatemala y Nicaragua. Consideramos a estas especies de <i>Adiantum</i> en Honduras vegetativamente similares: <i>A. raddianum, A. amplum, A. andicola, A. capillus-veneris, A. concinnum, A. tenerum, and A. thalictroides</i>. Se provee una clave para las especies mencionadas.<b>Palabras clave</b>: distribución, helechos, Mesoamérica, taxonomía.
DOI: 10.6084/m9.figshare.24424363
title: <b>Table 1</b>- Morphological comparison between <i>Adiantum raddianum</i> and the six mostsimilar species reported from Honduras.

description: <b>Abstract</b><i>Adiantum raddianum</i> is reported as a new record for the Honduran Flora. This new occurrence of<i> A. raddianum</i> closes a gap of distribution between Guatemala and Nicaragua. We consider this species vegetably similar to these species of <i>Adiantum</i> in Honduras:<i> A. raddianum, A. amplum, A. andicola, A. capillus-veneris, A.concinnum, A. tenerum, and A. thalictroide</i>s. A key to related species is provided.<b>Key words</b>: distribution, ferns, Mesoamerica, taxonomy.Resumen<i>Adiantum raddianum</i> es reportado como un nuevo registro para la Flora hondureña. Esta nueva ocurrencia de<i> A. raddianum</i> cierra una brecha de distribución entre Guatemala y Nicaragua. Consideramos a estas especies de <i>Adiantum</i> en Honduras vegetativamente similares: <i>A. raddianum, A. amplum, A. andicola, A. capillus-veneris, A. concinnum, A. tenerum, and A. thalictroides</i>. Se provee una clave para las especies mencionadas.<b>Palabras clave</b>: distribución, helechos, Mesoamérica, taxonomía.
DOI: 10.6084/m9.figshare.24261385.v4
title: Lili-Mip trajectories and results.zip

description: The unique viviparous Pacific Beetle cockroaches provide nutrition to their<br>embryo by secreting milk proteins Lili-Mip, which is a lipid-binding glycoprotein that crys-<br>tallizes in vivo. The resolved in vivo crystal structure of variably glycosylated Lili-Mip<br>shows a classical Lipocalin fold with an eight-stranded antiparallel beta-barrel enclosing a<br>fatty acid. The availability of physiologically unaltered glycoprotein structure makes Lili-<br>Mip a very attractive model system to investigate the role of glycans on protein structure,<br>dynamics, and function. Towards that end, we have employed all-atom molecular dynamics<br>simulations on various glycosylated stages of a bound and free Lili-Mip protein and charac-<br>terized the impact of glycans and the bound lipid on the dynamics of this glycoconjugate.<br>Our work provides important molecular-level mechanistic insights into the role of glycans in<br>the nutrient storage function of the Lili-Mip protein. Our analyses show that the glycans<br>locally stabilize spatially proximal residues and regulate the low amplitude opening motions<br>of the residues at the entrance of the binding pocket. Glycans, which are located at the<br>portal end of the barrel, also restrict the distal barrel depth and allosterically modulate<br>the lipid dynamics in the barrel. A simple but effective distance-based network analysis<br>of the protein also reveals the role of glycans in the subtle rewiring of residues crucial for<br>determining the barrel depth and lipid orientation
DOI: 10.21227/r7e6-bk48
title: Dataset for REMaQE evaluation

description: Dataset for evaluation of REMaQE

This dataset contains 3,137 randomly generated math equations, that have been compiled into ARM 32-bit HardFloat binaries using C and Simulink implementations, with 4 different optimization levels.
The binaries are reverse engineered to math equations by REMaQE, and this dataset covers a wide variety of binary implementations to evaluate REMaQE's performance.
Each generated equation is implemented as a C function and a Simulink model.
Simulink is popular for modelling controllers, and it provides features to compile the models into binaries for embedded targets.
The C function is compiled for ARM32-HF target using the GCC compiler (arm-linux-gnueabhihf-gcc).
The Simulink model is compiled for the same target using Simulink's code generation feature.
Four optimization levels from "-O0" to "-O3" are used during compilation to obtain a variety of implementations.
DOI: 10.5519/qd.0yf68pep
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (78 records)
DOI: 10.5519/qd.yvv42t4n
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (78 records)
DOI: 10.5281/zenodo.10035180
title: PIRETC - PROCEEDINGS OF THE INTERNATIONAL RESEARCH, EDUCATION & TRAINING CENTER

description: PIRETC - PROCEEDINGS OF THE INTERNATIONAL RESEARCH, EDUCATION & TRAINING CENTER
DOI: 10.5281/zenodo.10035179
title: PIRETC - PROCEEDINGS OF THE INTERNATIONAL RESEARCH, EDUCATION & TRAINING CENTER

description: PIRETC - PROCEEDINGS OF THE INTERNATIONAL RESEARCH, EDUCATION & TRAINING CENTER
DOI: 10.34740/kaggle/dsv/6778049
title: Balochi Language to English Translation Dataset
DOI: 10.6084/m9.figshare.18857965
title: Use of LC-Orbitrap MS and FT-NIRS with multivariate analysis to determine geographic origin of Boston butt pork

description: To avoid fraudulent practices, LC-Orbitrap and FT-NIRS combined with multivariate analysis was used to distinguish between 53 Korean and foreign Boston butt samples; forty were used to establish the calibration model and 13 were used as an external validation set. Twenty metabolites were determined to be good indicators of geographic origin. Both LC-Orbitrap with CDA model based on 20 metabolites and FT-NIRS with PLS achieved 100% efficiency in identifying Korean and foreign samples; overall predictive rates for LC-Orbitrap (94.9%) and FT-NIRS (100%). Thus, combined use of LC-Orbitrap and FT-NIRS could be proposed to determine reliably discriminate geographic origins of pork samples.
DOI: 10.6084/m9.figshare.18857965.v1
title: Use of LC-Orbitrap MS and FT-NIRS with multivariate analysis to determine geographic origin of Boston butt pork

description: To avoid fraudulent practices, LC-Orbitrap and FT-NIRS combined with multivariate analysis was used to distinguish between 53 Korean and foreign Boston butt samples; forty were used to establish the calibration model and 13 were used as an external validation set. Twenty metabolites were determined to be good indicators of geographic origin. Both LC-Orbitrap with CDA model based on 20 metabolites and FT-NIRS with PLS achieved 100% efficiency in identifying Korean and foreign samples; overall predictive rates for LC-Orbitrap (94.9%) and FT-NIRS (100%). Thus, combined use of LC-Orbitrap and FT-NIRS could be proposed to determine reliably discriminate geographic origins of pork samples.
DOI: 10.6084/m9.figshare.21206659.v1
title: Quercetin supplementation and muscular atrophy in animal models: A systematic review and meta-analysis

description: Muscle atrophy is a degenerative condition characterized by secondary inflammation, free radical injury, and metabolic dysregulation. Evidence regarding the effects of quercetin on skeletal muscle atrophy is currently controversial and unclear. We hypothesized that quercetin, a anti-inflammatory and antioxidant properties phytochemical, may play an important role in muscle atrophy, and we conducted a comprehensive systematic review and meta-analysis to summarize the effects of quercetin supplementation on muscular atrophy based on studies performed in animal models. Three atrophy biomarkers (muscle mass, fiber size, and function) with enough eligible studies (n = 6, 7, and 4, respectively) were combined in the final meta-analysis. Next, we calculated the overall and stratified effects of quercetin administration on muscular atrophy. No significant effects were observed on muscle mass and muscle function; however, we observed protective effects of quercetin on muscle fiber diameter and area [(Standardized Mean Difference (SMD): 0.82, 95% Confidence interval (CI): 0.36, 1.28), and (SMD: 0.94, 95% CI: 0.25, 1.62), respectively]. This study suggests that quercetin could have histological protection effect on muscle fiber. Thus, it could become a promising complementary therapy for muscle atrophy that occurs due to various clinical conditions. <b>Abbreviations</b>: SMD, Standardized Mean Difference; CI, Confidence interval; PRISMA-P, Preferred Reporting Items for Systematic Review and Meta-Analysis Protocols; Nrf2, nuclear factor erythroid 2-related factor; HO-1, heme oxygenase-1; PPAR-γ, peroxisome proliferator-activated receptor-γ; SIRT-1, silent mating type information regulator 2 homolog 1; PGC-1α, PPAR-γ coactivator-1α; FABP4, fatty acid binding protein 4; DMD, Duchenne muscular dystrophy
DOI: 10.6084/m9.figshare.21206659
title: Quercetin supplementation and muscular atrophy in animal models: A systematic review and meta-analysis

description: Muscle atrophy is a degenerative condition characterized by secondary inflammation, free radical injury, and metabolic dysregulation. Evidence regarding the effects of quercetin on skeletal muscle atrophy is currently controversial and unclear. We hypothesized that quercetin, a anti-inflammatory and antioxidant properties phytochemical, may play an important role in muscle atrophy, and we conducted a comprehensive systematic review and meta-analysis to summarize the effects of quercetin supplementation on muscular atrophy based on studies performed in animal models. Three atrophy biomarkers (muscle mass, fiber size, and function) with enough eligible studies (n = 6, 7, and 4, respectively) were combined in the final meta-analysis. Next, we calculated the overall and stratified effects of quercetin administration on muscular atrophy. No significant effects were observed on muscle mass and muscle function; however, we observed protective effects of quercetin on muscle fiber diameter and area [(Standardized Mean Difference (SMD): 0.82, 95% Confidence interval (CI): 0.36, 1.28), and (SMD: 0.94, 95% CI: 0.25, 1.62), respectively]. This study suggests that quercetin could have histological protection effect on muscle fiber. Thus, it could become a promising complementary therapy for muscle atrophy that occurs due to various clinical conditions. <b>Abbreviations</b>: SMD, Standardized Mean Difference; CI, Confidence interval; PRISMA-P, Preferred Reporting Items for Systematic Review and Meta-Analysis Protocols; Nrf2, nuclear factor erythroid 2-related factor; HO-1, heme oxygenase-1; PPAR-γ, peroxisome proliferator-activated receptor-γ; SIRT-1, silent mating type information regulator 2 homolog 1; PGC-1α, PPAR-γ coactivator-1α; FABP4, fatty acid binding protein 4; DMD, Duchenne muscular dystrophy
DOI: 10.26030/exp5-0232
title: Transcription profiling of Arabidopsis seedings exposed to UV-B irradiation

description: Interaction of COP1 and UVR8, which regulate UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis thaliana.
DOI: 10.6084/m9.figshare.24352672
title: Raw data for manuscript entitled "Time-dependence of SrVO<sub>3</sub> thermionic electron emission properties."

description: In this work, we studied the poly-crystalline SrVO<sub>3</sub> cathode activation process and its thermionic electron emission performance, cathode microstructure and surface chemistry evolution during this activation process, the operational stability over a period of 15 days, stability of the activated low effective low work function during cyclic heating and cooling process, and the short-term operational stability using a continuous emission test at operating conditions. Quantifying all of these practical stability assessments and understanding the evolution and interplay of the surface chemistry with measured effective work function are important for realizing the practical applications of SrVO<sub>3</sub> cathode.This files contain all the figure data used for the analysis in this manuscript.
DOI: 10.6084/m9.figshare.24352672.v1
title: Raw data for manuscript entitled "Time-dependence of SrVO<sub>3</sub> thermionic electron emission properties."

description: In this work, we studied the poly-crystalline SrVO<sub>3</sub> cathode activation process and its thermionic electron emission performance, cathode microstructure and surface chemistry evolution during this activation process, the operational stability over a period of 15 days, stability of the activated low effective low work function during cyclic heating and cooling process, and the short-term operational stability using a continuous emission test at operating conditions. Quantifying all of these practical stability assessments and understanding the evolution and interplay of the surface chemistry with measured effective work function are important for realizing the practical applications of SrVO<sub>3</sub> cathode.This files contain all the figure data used for the analysis in this manuscript.
DOI: 10.6073/pasta/186ac25e5d75010185d168828cb47e46
title: Santa Barbara Channel Marine BON: Nearshore kelp forest integrated taxa, 1980-ongoing

description: The Santa Barbara Channel Marine Biodiversity Network (SBC MBON) tracks long-term patterns in species abundance and diversity. By integrating research and monitoring efforts (both existing and de novo data), we provide a comprehensive view of biodiversity in the region. This dataset is a combined species list from four datasets currently handled and integrated by SBC MBON, with identifiers from an appropriate taxonomic registry included for each taxon. Because this species list reflects the integration of multiple collections, it will be updated as SBC MBON integration efforts develop. Santa Barbara Channel Marine BON: Integrated kelp forest/reef: Fish https://portal.edirepository.org/nis/mapbrowse?scope=edi&identifier=5&revision=newest Santa Barbara Channel Marine BON: Integrated kelp forest/reef: Quad and swath cover https://portal.edirepository.org/nis/mapbrowse?scope=edi&identifier=6&revision=newest Santa Barbara Channel Marine BON: Integrated kelp forest/reef: Benthic cover https://portal.edirepository.org/nis/mapbrowse?scope=edi&identifier=3&revision=newest As of 2018, this dataset contains approximately 400 taxa from combined observations beginning in 1980. Data include codes for the originating project and sampling method, plus basic taxonomic lineage. MBON is funded by National Aeronautics and Space Administration (NASA), Bureau of Ocean Energy Management (BOEM), and National Oceanic and Atmospheric Administration (NOAA). For users who are interested in using all or part of this integrated datasets, please contact data owners to discuss your research interests, data-related issues or any other questions. A recommended citation for the data package is available from the download page. In addition, any manuscript generated using this dataset is expected to be sent to the data owners before publication so we can be sure the data is used in the proper context and methods are reported accurately: Santa Barbara Coastal LTER (LTER): Dan Reed dan.reed@lifesci.ucsb.edu Robert Miller miller@msi.ucsb.edu Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO): Jenn Caselle caselle@ucsb.edu Kelp forest monitoring (KFM): David Kushner david_kushner@nps.gov Joshua Sprague joshua_sprague@nps.gov San Nicolas Island monitoring (SNI): Kevin Lafferty Klafferty@usgs.gov Mike Kenner mkenner@ucsc.edu
DOI: 10.7278/s50d-e0es-913n
title: Map and Monitoring Data for the Courthouse Mesa Rock Slope Instability, 2018–2022
DOI: 10.5281/zenodo.10034970
title: Data for "Negative density dependence promotes persistence of a globally rare yet locally abundant plant species (Oenoethera coloradensis)"

description: This dataset was used to perform the analyses in the manuscript "Negative density dependence promotes persistence of a globally rare yet locally abundant plant species (Oenoethera coloradensis)"
DOI: 10.5281/zenodo.10034969
title: Data for "Negative density dependence promotes persistence of a globally rare yet locally abundant plant species (Oenoethera coloradensis)"

description: This dataset was used to perform the analyses in the manuscript "Negative density dependence promotes persistence of a globally rare yet locally abundant plant species (Oenoethera coloradensis)"
DOI: 10.5281/zenodo.10035256
title: Dataset and Code: Associations of Seven Measures of Biological Age Acceleration with Frailty and All-Cause Mortality Among Adult Survivors of Childhood Cancer in the St. Jude Lifetime Cohort
DOI: 10.5281/zenodo.10035257
title: Dataset and Code: Associations of Seven Measures of Biological Age Acceleration with Frailty and All-Cause Mortality Among Adult Survivors of Childhood Cancer in the St. Jude Lifetime Cohort
DOI: 10.6073/pasta/a3511729cbc67fa7b98fdc3d28630676
title: Santa Barbara Channel Marine BON: Nearshore kelp forest integrated benthic cover, 1980-ongoing

description: The Santa Barbara Channel Marine Biodiversity Observation Network (SBCMBON) tracks long-term patterns in species abundance and diversity. This dataset contains cover of kelp forest sessile invertebrates, understory macroalgae, and substrate types by integrating data from four contributing projects working in the kelp forests of the Santa Barbara Channel, USA. Divers collect data on using either uniform point contact (UPC) or random point contact (RPC) methods. The four contributing projects are two research projects: The Santa Barbara Coastal LTER (SBC LTER) and the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO), the kelp forest monitoring program of the Santa Barbara Channel National Park, and the San Nicolas Island monitoring program supported by USGS. Together, these projects have recorded data for more than 200 species at approximately 100 sites on both the mainland coast and on the Santa Barbara Channel Islands. Sampling began in 1982 and is ongoing. Data were collected by human observation (divers using SCUBA) during regular surveys. Percent cover is recorded for taxa where individuals cannot be counted. Cover can be calculated from the data here as the fraction of total points at which the taxon was present x 100. With UPC and RPC methods, multiple species can be recorded at any given point. The total percent cover of all species combined using this method can exceed 100%; however, the percent cover of any single species cannot exceed 100%. See Methods for information on integration and data processing. MBON is funded by National Aeronautics and Space Administration (NASA), Bureau of Ocean Energy Management (BOEM), and National Oceanic and Atmospheric Administration (NOAA). For users who are interested in using all or part of this integrated datasets, please contact data owners to discuss your research interests, data-related issues or any other questions. A recommended citation for the data package is available from the download page. In addition, any manuscript generated using this dataset is expected to be sent to the data owners before publication so we can be sure the data is used in the proper context and methods are reported accurately: Santa Barbara Coastal LTER (LTER): Dan Reed dan.reed@lifesci.ucsb.edu Robert Miller miller@msi.ucsb.edu Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO): Jenn Caselle caselle@ucsb.edu Kelp forest monitoring (KFM): David Kushner david_kushner@nps.gov Joshua Sprague joshua_sprague@nps.gov San Nicolas Island monitoring (SNI): Kevin Lafferty Klafferty@usgs.gov Mike Kenner mkenner@ucsc.edu
DOI: 10.6084/m9.figshare.24424534
title: <b>Supplementary Material – </b><b>Exploring the diversity of ferns and lycophytes in the Jardim Botânico do Rio de Janeiro</b>

description: <b>Table S1 – </b><b>List of the ferns and lycophytes in the Jardim Botânico do Rio de Janeiro</b>
DOI: 10.6084/m9.figshare.24421954
title: A systematic scientometric review of paternal inheritance of acquired metabolic traits

description: Publicly available data used to produce the manuscript <i>"</i><i>A systematic scientometric review of paternal inheritance of acquired metabolic traits</i><i>"</i>. These include the scripts used for the initial Scopus bibliographical search and for extracting bibliographical information of selected publications, the spreadsheets with stepwise screening of the publications, the datasets used in the “Multiomics integration” section and the R script to process the multiomics datasets. Please find the abstract below:<b>Background:</b>The concept of the inheritance of acquired traits, a foundational principle of Lamarck's evolutionary theory, has garnered renewed attention in recent years. Evidence for this phenomenon remained limited for decades but gained prominence with the Överkalix cohort study in 2002. This study revealed a link between cardiovascular disease incidence and the food availability experienced by individuals' grandparents during their slow-growth periods, reigniting interest in the inheritance of acquired traits, particularly in the context of non-communicable diseases. This scientometric analysis and systematic review comprehensively explores the current landscape of paternally transmitted acquired metabolic traits.<b>Results:</b>Utilizing Scopus Advanced search and meticulous screening, we included mammalian studies that document the inheritance or modification of metabolic traits in subsequent generations of unexposed descendants. Our inclusive criteria encompass intergenerational and transgenerational studies, as well as multigenerational exposures. Predominantly, this field has been driven by a select group of researchers, potentially shaping the design and focus of existing studies. Consequently, the literature primarily comprises transgenerational rodent investigations into the effects of ancestral exposure to environmental pollutants on sperm DNA methylation. The complexity and volume of data often lead to multiple or redundant publications. This practice, while understandable, may obscure the true extent of the impact of ancestral exposures on the health of non-exposed descendants. In addition to DNA methylation, studies have illuminated the role of sperm RNAs and histone marks in paternally acquired metabolic disorders, expanding our understanding of the mechanisms underlying epigenetic inheritance.<b>Conclusions:</b>This review serves as a comprehensive resource, shedding light on the current state of research in this critical area of science, and underscores the need for continued exploration to uncover the full spectrum of paternally mediated metabolic inheritance.