cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21223/2d2nav
title: Dataset for: At least ten advanced clones of the LBHTXLTVR population selected with low glycoalkaloid content in contrasting environments. In addition to high levels of late blight resistance, high tuber yield, heat tolerance, adapted to midland and highland in San Ramon.

description: Twenty-eight advanced clones of the LBHT x LTVR population and three control varieties Yungay, Canchan and Desiree were planted in San Ramon, Chanchamayo between 2019 and 2020. The objective was to study the glycoalkaloid content under contrasting environments, a randomized complete block design was used with three replications of ten plants each, the dose of 200-180-160 kg NPK per ha was used. No fungicides were applied to control late blight. The glycoalkaloid content was determined in the laboratory. At harvest, fifteen tubers were collected from each sample and taken to the Quality and Nutrition Laboratory of CIP-Lima, Peru, for sample preparation and glycoalkaloid analysis. Freeze-dried and ground samples were prepared from each tuber and stored at 20°C until analysis. Total glycoalkaloids analysis was performed using the method described by Burgos et al. (2014) in which the extraction of glycoalkaloids was executed using methanol and chloroform prior to concentration at 60 ° C in a rotary evaporator. The extract was transferred to 2% acetic acid solution and then purified using ammonium hydroxide at 85 ° C and ultracentrifugation at 27,000 rpm. The pellet was reacted with 85% orthophosphoric acid and read at 408 nm in a spectrophotometer. The determination of total glycoalkaloids was performed against a standard curve of α-chaconine as a reference. This parameter was used as a criterion to select the clones to be further evaluated in the next season. Only clones with a total glycoalkaloid concentration below the safety limit for human consumption (20 mg / 100 g fresh weight) were selected.
DOI: 10.6084/m9.figshare.24582324
title: 3T3 specific R-loops

description: 3T3 and E14 specific R-loops were generated by extracting mutually exclusive DRIP-seq peaks in both cell lines.
DOI: 10.6084/m9.figshare.24582324.v1
title: 3T3 specific R-loops

description: 3T3 and E14 specific R-loops were generated by extracting mutually exclusive DRIP-seq peaks in both cell lines.
DOI: 10.5281/zenodo.8250163
title: Phlorest phylogeny derived from Lee 2015 'A Sketch of Language History in the Korean Peninsula'

description: Cite the source of the dataset as: Lee S (2015) A Sketch of Language History in the Korean Peninsula. PLoS ONE 10(5): e0128448. doi:10.1371/journal.pone.0128448
DOI: 10.5281/zenodo.10149812
title: Phlorest phylogeny derived from Lee 2015 'A Sketch of Language History in the Korean Peninsula'

description: Cite the source of the dataset as:




Lee S (2015) A Sketch of Language History in the Korean Peninsula. PLoS ONE 10(5): e0128448. doi:10.1371/journal.pone.0128448
DOI: 10.21223/asvuig
title: Dataset for: Breeding for resistance to late blight - LBHTC2 population- Phenotypic and Genomic Selection (2020-2021)

description: The production of potato (Solanum tuberosum) in farmers' fields is heavily affected by the late blight [Phythophthora infestans (Mont) de Bary] disease. The International Potato Center (CIP) has a breeding population with resistance to late blight, heat tolerance and high yields of tubers called LBHT (Gastelo et al 2015). In 2020-2021 season these 500 clones were sown in intermediate trials in the localities of Oxapampa, Huanuco, 9°48′06″S, 2500 masl and Huancayo, 12º07'S, 3280 masl, under the 30x20 row-column design (John 1989), with two replications of 10 plants each. The late blight control was with two applications of the contact fungicide Mancozeb, up to 100% of the emergence of the plants, the damage by the disease was evaluated from 35 days after sowing to 85 days, with intervals of 7 days, carrying out 7 evaluations, then the rAUDPC values were calculated https://doi.org/10.4160/9789290603917, at harvest the number and weight of commercial and non-commercial tubers were taken. These experiments are within the Excellence platform in Breeding (https://excellenceinbreeding.org/module1), product design, and management module. The data analysis was performed using the mixed model analysis, which makes spatial corrections to obtain the BLUPs (best linear unbiased predictions) of late blight resistance measured through the area under the disease progress curve relative (rAUDPC) and Marketable tuber yield unadjusted yield per hectare (MTYNA). The combined analysis of the three localities was carried out, estimating the predicted values and the selection index of the clones. The combined analysis of the three locations shows us rAUDPC values ranged between 0.000 and 0.263 for tested clones. 81.708% of the clones presented rAUDPC values less than 0.037 (Kory resistant control value), while the susceptible check Yungay had an rAUDPC value of 0.257. MTYNA means varied from 3.85 to 35.73 t/ha, with an average of 20.22 t / ha higher than those of the controls, which varied from 7.29 to 19.55 t/ha. 150 clones with a high level of late blight resistance, tuber yield larger than Yungay’s, and good agronomic characteristics (skin color and tuber shape) were selected using the selection index. The rAUDPC values of the selected clones varied from 0.000 to 0.064, with an average of 0.015, the yields under the pressure of the disease ranging between 14.76 and 35.73 t / ha with an average of 25.34 t / ha. These clones will be planted in the 2021-2022 season in four locations in advanced trials.
DOI: 10.21223/gmyiop
title: Dataset for: Dataset for Generation of new progenies to use in development Product Profile to replace Canchan variety, introgression of new sources of resistance of late blight, bacterial wilt and drought tolerance.

description: The crossing plan was planted in October 2019, under greenhouse conditions in Huancayo at 3280 masl and 12º07'S, 55 clones of the groups B3C1, B3C2, B3C3, LBHT, and LBHTxLTVR (LB), were crossed as female parents and 170 clones with resistance to Late Blight (LB), tolerance to drought and new late blight clones from wild species Solanum cajamarquense, Solanum Chiquidenum (Clones ER) with new genes for resistance to LB, 5 clones with resistance to bacterial wilt (BW) and three Tuberosum varieties: Alpha, Desiree, and Kathadn, as male parents. To ensure greater flowering, the duration of the day was extended to 16 hours with 4 hours of artificial light, the stolons were eliminated to avoid the formation of tubers and induce a greater production of flowers. The crosses began in December 2020, The berry harvest was in the month of April 2021. 133 LB x BW, 52 LB x ER, 110 LB x tuberosum varieties, and 65 LB x LB progenies were obtained with a range of true potato seeds (TPS) from 4 to 3350 seeds, el 50% of the progenies had more than 500 seeds each
DOI: 10.6084/m9.figshare.24582363
title: E14 specific R-loops

description: 3T3 and E14 specific R-loops were generated by extracting mutually exclusive DRIP-seq peaks in both cell lines.
DOI: 10.6084/m9.figshare.24582363.v1
title: E14 specific R-loops

description: 3T3 and E14 specific R-loops were generated by extracting mutually exclusive DRIP-seq peaks in both cell lines.
DOI: 10.21223/p3/bjbynj
title: Dataset for: Genetic gains in the content of "Fe" and "Zn” in diploid potato for three cycles recurrent selection (Minerals)

description: The purpose of this study was to estimate the genetic gains of three cycles of recurrent selection for the Zn and Fe content in diploid potatoes, and to determine the heritability and relationships with variables of agronomical importance (minerals). The field evaluation was conducted in La Victoria, Huancayo, Junin, Peru in a Randomized Complete Block Design, with four repetitions, evaluating 61 genotypes (16=cycle0, 2=cycle1, 21=cycle2, 22=cycle3). And in Acco, Paucartambo, Pasco, Peru in a Randomized Complete Block Design, with four repetitions, evaluating 55 genotypes (15=cycle0, 0=cycle1, 20=cycle2, 20=cycle3).
DOI: 10.5517/ccdc.csd.cc2czb2s
title: CCDC 2203885: Experimental Crystal Structure Determination

description: Related Article: Luke P. Skala, Charlotte L. Stern, Laura Bancroft, Casandra M. Moisanu, Chloe Pelkowski, Xavier Aguilar-Enriquez, Jeremy L. Swartz, Michael R. Wasielewski, William R. Dichtel|2023|Chem (Cell Press)|9|1208|doi:10.1016/j.chempr.2023.01.011
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.21223/p3/l4pfiu
title: Dataset for: Genetic gains in the content of "Fe" and "Zn” in diploid potato for three cycles recurrent selection (Yield)

description: The purpose of this study was to estimate the genetic gains of three cycles of recurrent selection for the Zn and Fe content in diploid potatoes, and to determine the heritability and relationships with variables of agronomical importance (yield). The field evaluation was conducted in La Victoria, Huancayo, Junin, Peru in a Randomized Complete Block Design, with four repetitions, evaluating 61 genotypes (16=cycle0, 2=cycle1, 21=cycle2, 22=cycle3). And in Acco, Paucartambo, Pasco, Peru in a Randomized Complete Block Design, with four repetitions, evaluating 64 genotypes (17=cycle0, 4=cycle1, 21=cycle2, 22=cycle3).
DOI: 10.21223/p3/g4mwzn
title: Dataset for: Genetic gains in the content of "Vitamin C” in diploid potato for three cycles recurrent selection

description: The purpose of this study was to estimate the genetic gains of three cycles of recurrent selection for the Vitamin C content in diploid potatoes, and to determine the heritability and relationships with variables of agronomical importance. The field evaluation was conducted in La Victoria, Huancayo, Junin, Peru in a Randomized Complete Block Design, with four repetitions, evaluating 61 genotypes (16=cycle0, 2=cycle1, 21=cycle2, 22=cycle3) and in Acco, Paucartambo, Pasco, Peru in a Randomized Complete Block Design, with three repetitions, evaluating 55 genotypes (15=cycle0, 0=cycle1, 20=cycle2, 20=cycle3).
DOI: 10.5255/ukda-sn-856812
title: Understanding the Barriers to Commissioning Social and Therapeutic Horticulture in Health Care To Inform Evidence-Based Policymaking, 2023

description: This study aimed to understand the barriers to commissioning social and therapeutic horticulture (STH) in mental health care and to identify potential solutions to barriers, to support more widespread availability of services for the prevention and treatment of mental ill-health. Individuals with a role in mental health care commissioning from across the UK were invited to take part in semi-structured interviews via Zoom. Interviews explored factors influencing service commissioning, participants' perception of the role of STH in mental health care and the barriers to commissioning STH, together with potential solutions. Commissioners identified a lack of knowledge of STH and evidence of its effectiveness as barriers to commissioning. Challenges in commissioning STH services for whole regions were also highlighted as a barrier, along with a commissioning culture that prioritises traditional medical models. To upscale the commissioning of STH in mental health care, information on STH services and their effectiveness needs to be easily accessible to practitioners. The sector should also work collaboratively to enable the commissioning of services at scale.
DOI: 10.5281/zenodo.10075945
title: Milo csQTL mapping Summary Statistics

description: Summary statistics from Milo cell state quantitative trait loci mapping analysis on human peripheral immune cells from Randolph et al. Each folder contains csQTLs per chromosome. Files are names 'chromosome_position_minorallele_majorallele_locus.tsv.gz'. Data are block gzip compressed and tabix indexed for rapid access based on SNP position (GRCh38 coordinates).
DOI: 10.5281/zenodo.10075946
title: Milo csQTL mapping Summary Statistics

description: Summary statistics from Milo cell state quantitative trait loci mapping analysis on human peripheral immune cells from Randolph et al. Each folder contains csQTLs per chromosome. Files are names 'chromosome_position_minorallele_majorallele_locus.tsv.gz'. Data are block gzip compressed and tabix indexed for rapid access based on SNP position (GRCh38 coordinates).
DOI: 10.6073/pasta/b36d87a1cedccfab373d9dc72c6bdc19
title: Canopy invertebrate responses to Hurricane Hugo

description: We study long-term responses of insects and other arthropods to various disturbances and environmental changes, as well as important roles in ecosystem processes. Five tree species in 1991, six during 1992-1995, and seven since 1997 were selected to represent early and late successional forests at El Verde. These trees were sampled in both gap and non-gap plots resulting from Hurricane Hugo. During the past 27 years, these plots have been subjected to multiple disturbances, including Hurricane Georges in 1998 and major droughts in 1994, 1997 and 2002, in addition to several minor hurricanes and droughts. Each of these disturbances has influenced the arthropod community. This project is ongoing. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.5281/zenodo.10149816
title: THE IMPORTANCE OF MENTAL ABILITY IN THE DEVELOPMENT OF LOGICAL THINKING
DOI: 10.5281/zenodo.10149817
title: THE IMPORTANCE OF MENTAL ABILITY IN THE DEVELOPMENT OF LOGICAL THINKING
DOI: 10.5281/zenodo.10149825
title: Phlorest phylogeny derived from Lee & Hasegawa 2013 'Evolution of the Ainu Language in Space and Time'

description: Cite the source of the dataset as:




Lee S, Hasegawa T (2013) Evolution of the Ainu Language in Space and Time. PLoS ONE 8(4): e62243. doi: 10.1371/journal.pone.0062243
DOI: 10.5281/zenodo.8250180
title: Phlorest phylogeny derived from Lee & Hasegawa 2013 'Evolution of the Ainu Language in Space and Time'

description: Cite the source of the dataset as: Lee S, Hasegawa T (2013) Evolution of the Ainu Language in Space and Time. PLoS ONE 8(4): e62243. doi: 10.1371/journal.pone.0062243
DOI: 10.6084/m9.figshare.24582390
title: STIX_dataset

description: The STIX1 and STIX2 data.
DOI: 10.6084/m9.figshare.24582390.v1
title: STIX_dataset

description: The STIX1 and STIX2 data.
DOI: 10.5281/zenodo.10149839
title: Phlorest phylogeny derived from Robinson and Holton 2012 'Internal Classification of the Alor-Pantar Language Family Using Computational Methods Applied to the Lexicon'

description: Cite the source of the dataset as:




Robinson, L. C., & Holton, G. (2012). Internal Classification of the Alor-Pantar Language Family Using Computational Methods Applied to the Lexicon. Language Dynamics and Change, 2(2), 123-149. doi:10.1163/22105832-20120201
DOI: 10.5281/zenodo.8250286
title: Phlorest phylogeny derived from Robinson and Holton 2012 'Internal Classification of the Alor-Pantar Language Family Using Computational Methods Applied to the Lexicon'

description: Cite the source of the dataset as: Robinson, L. C., & Holton, G. (2012). Internal Classification of the Alor-Pantar Language Family Using Computational Methods Applied to the Lexicon. Language Dynamics and Change, 2(2), 123-149. doi:10.1163/22105832-20120201
DOI: 10.5281/zenodo.10149836
title: SAFEGUARDING THE DIGITAL FRONTIER: EXPLORING MODERN CYBERSECURITY METHODS
DOI: 10.5281/zenodo.10149835
title: SAFEGUARDING THE DIGITAL FRONTIER: EXPLORING MODERN CYBERSECURITY METHODS
DOI: 10.6084/m9.figshare.24582453
title: README

description: README file
DOI: 10.6084/m9.figshare.24582453.v1
title: README

description: README file
DOI: 10.5281/zenodo.10149844
title: СВОЙСТВА И ТЕХНОЛОГИЯ МНОГОФУНКЦИОНАЛЬНЫХ ОРГАНОМИНЕРАЛЬНЫХ ПОКРЫТИЙ, УСТОЙЧИВЫХ К АГРЕССИВНЫМ СРЕДАМ, ДЛЯ КРУПНОТОННАЖНОГО ОБОРУДОВАНИЯ ПО СБОРУ, ХРАНЕНИЮ И ТРАНСПОРТИРОВКЕ НЕФТИ И ГАЗА.
DOI: 10.5281/zenodo.10149845
title: СВОЙСТВА И ТЕХНОЛОГИЯ МНОГОФУНКЦИОНАЛЬНЫХ ОРГАНОМИНЕРАЛЬНЫХ ПОКРЫТИЙ, УСТОЙЧИВЫХ К АГРЕССИВНЫМ СРЕДАМ, ДЛЯ КРУПНОТОННАЖНОГО ОБОРУДОВАНИЯ ПО СБОРУ, ХРАНЕНИЮ И ТРАНСПОРТИРОВКЕ НЕФТИ И ГАЗА.
DOI: 10.34740/kaggle/dsv/6990186
title: MoviesDatasets
DOI: 10.5281/zenodo.7942814
title: Epiphyseal Cartilage Vascular Architecture at the Distal Humeral Osteochondritis Dissecans Predilection Site in Juvenile Pigs

description: This dataset contains all the raw source data and MATLAB analysis functions that comprise the study:
 
Epiphyseal Cartilage Vascular Architecture at the Distal Humeral Osteochondritis Dissecans Predilection Site in Juvenile Pigs
 
Journal of Orthopaedic Research | DOI:  https://doi.org/10.1002/jor.25732
 
 
Ferenc Tóth, Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota
Mikko J. Nissi, Department of Technical Physics, University of Eastern Finland  
Alexandra R. Armstrong, Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota
Erick O. Buko, Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota; Center for Magnetic Resonance Research, University of Minnesota  
Casey P. Johnson, Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota; Center for Magnetic Resonance Research, University of Minnesota
 
 
Corresponding author (whole study):
Ferenc Tóth
The University of Minnesota
1365 Gortner Ave., St. Paul, MN 55108
Tel.: 612-624-7727
Fax.: 612-624-8753
email: ftoth@umn.edu
 
 
 
Corresponding author (data set):
Mikko J. Nissi
Department of Technical Physics
University of Eastern Finland
POB 1627, FI-70211, Kuopio, Finland
+358-50-5955517
mikko.nissi@uef.fi
 
 
Keywords: OCD, MRI, humerus, vasculature, pathogenesis, quantitative susceptibility mapping
 
 
 
Included folders and files are:
3-D_visualizations
   - 3D_models: 3-D models of the specimens (Rhinoceros .3dm files)
   - Raw_Animation_files: .png format animation image exports
   - Ready_Animation_videos: .mp4 / .mov supplementary animation movie clips and Blender video edition files
   - Visualizations_w_different_lambda: visualizations of the resulting 3-D models with different MEDI L1 lambda values
 
Figure_parts
   - Sub-parts of various manuscript figures
 
Histo_images
   - Collections of histological images of the specimens in a powerpoint file
 
raw_MRI_data
   - RAW Varian/Agilent MRI data for all specimens
   - Pre-processed data for each specimen:
       - Segmentation masks (epiphyseal cartilage, SOC) and ROI files (for Aedes)
       - QSM data processed as described in the manuscript, using the mask provided (VSHARP + MEDI), using MEDI-toolbox
       - Binary image created from the QSM data via highest-correlating binary threshold
       - 3-D .stl files for
           - AECC (articular-epiphyseal cartilage-complex)
           - SOC (secondary ossification center)
           - vasculature (from the binary-threshold-QSM data)
 
matlab_functions
   - Collection of matlab functions the analysis script requires
 
data_processing_script.m:  Matlab script for producing data visualizations for most of the manuscript figures  
scan_protocol_by_sample.xls:  Excel file listing the primary scan parameters for each specimen
README.txt:  this file
 
 
(Mikko Nissi, Nov 17, 2023)
DOI: 10.5281/zenodo.7942813
title: Epiphyseal Cartilage Vascular Architecture at the Distal Humeral Osteochondritis Dissecans Predilection Site in Juvenile Pigs

description: This dataset contains all the raw source data and MATLAB analysis functions that comprise the study:
 
Epiphyseal Cartilage Vascular Architecture at the Distal Humeral Osteochondritis Dissecans Predilection Site in Juvenile Pigs
 
Journal of Orthopaedic Research | DOI:  https://doi.org/10.1002/jor.25732
 
 
Ferenc Tóth, Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota
Mikko J. Nissi, Department of Technical Physics, University of Eastern Finland  
Alexandra R. Armstrong, Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota
Erick O. Buko, Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota; Center for Magnetic Resonance Research, University of Minnesota  
Casey P. Johnson, Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota; Center for Magnetic Resonance Research, University of Minnesota
 
 
Corresponding author (whole study):
Ferenc Tóth
The University of Minnesota
1365 Gortner Ave., St. Paul, MN 55108
Tel.: 612-624-7727
Fax.: 612-624-8753
email: ftoth@umn.edu
 
 
 
Corresponding author (data set):
Mikko J. Nissi
Department of Technical Physics
University of Eastern Finland
POB 1627, FI-70211, Kuopio, Finland
+358-50-5955517
mikko.nissi@uef.fi
 
 
Keywords: OCD, MRI, humerus, vasculature, pathogenesis, quantitative susceptibility mapping
 
 
 
Included folders and files are:
3-D_visualizations
   - 3D_models: 3-D models of the specimens (Rhinoceros .3dm files)
   - Raw_Animation_files: .png format animation image exports
   - Ready_Animation_videos: .mp4 / .mov supplementary animation movie clips and Blender video edition files
   - Visualizations_w_different_lambda: visualizations of the resulting 3-D models with different MEDI L1 lambda values
 
Figure_parts
   - Sub-parts of various manuscript figures
 
Histo_images
   - Collections of histological images of the specimens in a powerpoint file
 
raw_MRI_data
   - RAW Varian/Agilent MRI data for all specimens
   - Pre-processed data for each specimen:
       - Segmentation masks (epiphyseal cartilage, SOC) and ROI files (for Aedes)
       - QSM data processed as described in the manuscript, using the mask provided (VSHARP + MEDI), using MEDI-toolbox
       - Binary image created from the QSM data via highest-correlating binary threshold
       - 3-D .stl files for
           - AECC (articular-epiphyseal cartilage-complex)
           - SOC (secondary ossification center)
           - vasculature (from the binary-threshold-QSM data)
 
matlab_functions
   - Collection of matlab functions the analysis script requires
 
data_processing_script.m:  Matlab script for producing data visualizations for most of the manuscript figures  
scan_protocol_by_sample.xls:  Excel file listing the primary scan parameters for each specimen
README.txt:  this file
 
 
(Mikko Nissi, Nov 17, 2023)
DOI: 10.5281/zenodo.10149865
title: Phlorest phylogeny derived from Sagart et al. 2019 'Dated language phylogenies shed light on the ancestry of Sino-Tibetan'

description: Cite the source of the dataset as:




Sagart L, Jacques G, Lai Y, Ryder RJ, Thouzeau V, Greenhill SJ, List J- M. 2019 Dated language phylogenies shed light on the ancestry of Sino-Tibetan. Proceedings of the National Academy of Sciences, 201817972.
DOI: 10.5281/zenodo.8250295
title: Phlorest phylogeny derived from Sagart et al. 2019 'Dated language phylogenies shed light on the ancestry of Sino-Tibetan'

description: Cite the source of the dataset as: Sagart L, Jacques G, Lai Y, Ryder RJ, Thouzeau V, Greenhill SJ, List J- M. 2019 Dated language phylogenies shed light on the ancestry of Sino-Tibetan. Proceedings of the National Academy of Sciences, 201817972.
DOI: 10.34740/kaggle/dsv/6990195
title: Mahanagar Yatayat Transport Dataset
DOI: 10.5281/zenodo.8052968
title: Garaffa_et_al_OE_2023_Supplemental_Information

description: Supplemental Information. Garaffa et al., Stocktake of G20 countries' climate pledges reveals limited macroeconomic costs and employment shifts, One Earth (2023), https://doi.org/10.1016/j.oneear.2023.10.012 
List of policies included in the scenarios (CurPol, NDC-LTS and 1.5C)