cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17820719
title: Supplementary Material for: Do Concentration or Activity of Selenoproteins Change in Acute Stroke Patients? A Systematic Review and Meta-Analyses

description: <b><i>Introduction:</i></b> Stroke is characterized by deleterious oxidative stress. Selenoprotein enzymes are essential endogenous antioxidants, and detailed insight into their role after stroke could define new therapeutic treatments. This systematic review aimed to elucidate how blood selenoprotein concentration and activity change in the acute phase of stroke. <b><i>Methods:</i></b> We searched PubMed, EMBASE, and Medline databases for studies measuring serial blood selenoprotein concentration or activity in acute stroke patients or in stroke patients compared to non-stroke controls. Meta-analyses of studies stratified by the type of stroke, blood compartment, and type of selenoprotein measurement were conducted. <b><i>Results:</i></b> Eighteen studies and data from 941 stroke patients and 708 non-stroke controls were included in this review. Glutathione peroxidase (GPx) was the only identified selenoprotein, and its activity was most frequently measured. Results from 12 studies and 693 patients showed that compared to non-stroke controls in acute ischaemic stroke patients, the GPx activity increased in haemolysate (standardized mean difference [SMD]: 0.27, 95% CI: 0.07–0.47) but decreased in plasma (mean difference [MD]: −1.08 U/L, 95% CI: −1.94 to −0.22) and serum (SMD: −0.54, 95% CI: −0.91 to −0.17). From 4 identified studies in 106 acute haemorrhagic stroke patients, the GPx activity decreased in haemolysate (SMD: −0.40, 95% CI: −0.68 to −0.13) and remained unchanged in plasma (MD: −0.10 U/L, 95% CI: −0.81 to 0.61) and serum (MD: −5.00 U/mL, 95% CI: −36.17 to 26.17) compared to non-stroke controls. Results from studies assessing the GPx activity in the haemolysate compartment were inconsistent and characterized by high heterogeneity. <b><i>Conclusions:</i></b> Our results suggest a reduction of the blood GPx activity in acute ischaemic stroke patients, a lack of evidence regarding a role for GPx in haemorrhagic stroke patients, and insufficient evidence for other selenoproteins.
DOI: 10.6084/m9.figshare.17815760
title: Combined scattering effects of simultaneous H+ and He+ band EMIC waves on radiation belt electrons

description: To examine the interactions of multiple resonant effects driven by various kinds of plasma waves on radiation belt electrons, this study comprehensively investigates the individual and combined scattering effects of H<sup>+</sup> and He<sup>+</sup> band EMIC waves by quasi-linear theory and test particle simulation.<br>
DOI: 10.6084/m9.figshare.17815760.v1
title: Combined scattering effects of simultaneous H+ and He+ band EMIC waves on radiation belt electrons

description: To examine the interactions of multiple resonant effects driven by various kinds of plasma waves on radiation belt electrons, this study comprehensively investigates the individual and combined scattering effects of H<sup>+</sup> and He<sup>+</sup> band EMIC waves by quasi-linear theory and test particle simulation.<br>
DOI: 10.5517/ccdc.csd.cc1q8w84
title: CCDC 1587456: Experimental Crystal Structure Determination

description: Related Article: Jairam Tagare, Aravind Babu Kajjam, Kasturi Singh, Sabita Patel, Sivakumar Vaidyanathan|2022|Mat.Advs.|3|399|doi:10.1039/D1MA00583A
DOI: 10.5517/ccdc.csd.cc1zv656
title: CCDC 1842428: Experimental Crystal Structure Determination

description: Related Article: Jairam Tagare, Aravind Babu Kajjam, Kasturi Singh, Sabita Patel, Sivakumar Vaidyanathan|2022|Mat.Advs.|3|399|doi:10.1039/D1MA00583A
DOI: 10.5517/ccdc.csd.cc1zv667
title: CCDC 1842429: Experimental Crystal Structure Determination

description: Related Article: Jairam Tagare, Aravind Babu Kajjam, Kasturi Singh, Sabita Patel, Sivakumar Vaidyanathan|2022|Mat.Advs.|3|399|doi:10.1039/D1MA00583A
DOI: 10.5517/ccdc.csd.cc1zv7xz
title: CCDC 1842482: Experimental Crystal Structure Determination

description: Related Article: Jairam Tagare, Aravind Babu Kajjam, Kasturi Singh, Sabita Patel, Sivakumar Vaidyanathan|2022|Mat.Advs.|3|399|doi:10.1039/D1MA00583A
DOI: 10.5517/ccdc.csd.cc26w6lx
title: CCDC 2051939: Experimental Crystal Structure Determination

description: Related Article: Mehmet Menaf Ayhan, Emrah Özcan, Fahri Alkan, Metin Çetin, İlker Ün, David Bardelang, Bünyemin Çoşut|2021|Mat.Advs.|3|547|doi:10.1039/D1MA00931A
description: Related Article: Bunyemin COSUT, Emrah Özcan, Mehmet Menaf Ayhan, Fahri Alkan|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27h05y
title: CCDC 2069999: Experimental Crystal Structure Determination

description: Related Article: Shiraz Ahmed Siddiqui, Alexander Prado-Roller, Hidetsugu Shiozawa|2022|Mat.Advs.|3|224|doi:10.1039/D1MA00866H
DOI: 10.5517/ccdc.csd.cc27h06z
title: CCDC 2070000: Experimental Crystal Structure Determination

description: Related Article: Shiraz Ahmed Siddiqui, Alexander Prado-Roller, Hidetsugu Shiozawa|2022|Mat.Advs.|3|224|doi:10.1039/D1MA00866H
DOI: 10.5517/ccdc.csd.cc28s9t6
title: CCDC 2108738: Experimental Crystal Structure Determination

description: Related Article: Suvratha Krishnamurthy, Yoshiaki Yoshida, Takeshi Endo|2021|Polym.Chem.|13|267|doi:10.1039/D1PY01230D
DOI: 10.25721/sp9y-6t62
title: Fabrication du galoubet : signature. Information sur les viroles et becs en os
DOI: 10.18112/openneuro.ds003972.v1.0.0
title: Body Motor
DOI: 10.21227/rjv6-f516
title: Data Fusion Contest 2022 (DFC2022)

description: tba
DOI: 10.5281/zenodo.5816582
title: Influence of the tropical Indian Ocean tripole on summertime cold extremes over central Siberia

description: These experiments are used to study atmospheric circulation responses to SST forcing related to Indian Ocean tripole mode, including the precipitation, zonal and meridional winds.
DOI: 10.5281/zenodo.5816581
title: Influence of the tropical Indian Ocean tripole on summertime cold extremes over central Siberia

description: These experiments are used to study atmospheric circulation responses to SST forcing related to Indian Ocean tripole mode, including the precipitation, zonal and meridional winds.
DOI: 10.25721/6fx0-jh39
title: Fabrication du galoubet : Information sur la pose de virole et bec en os
DOI: 10.25721/tzk6-1t61
title: Fabrication du galoubet : position de jeu
DOI: 10.25721/54ck-7t77
title: Fabrication du galoubet : échelle et ambitus du galoubet
DOI: 10.5522/04/13402301
title: High Magnification Z-Stacks from Blood Films

description: All biological samples were collected from participants recruited under the auspices of the CMRG at the 800-bed tertiary hospital, UCH in the city of Ibadan, Nigeria, after after de-identification of the patient information. We trained and tested the CAMI-Fusion network on three different types of samples: (a) Giemsa-stained thick blood films (TBF) and (b) Giemsa-stained peripheral blood smears (PBS) for malaria parasite detection as well as (c) Wright-stained Bone Marrow Aspirates (BMA) for diagnosing blood cancers.<i><br></i><i>Image acquisition and pre-processing:</i> We used an upright brightfield microscope (BX63, Olympus, 100W halogen bulb light source) with a 100X/1.4NA oil immersion objective (MPlanApoN, Olympus) and a color digital camera (Edge 5.5C, PCO) to acquire multiple high-resolution z-stacks with an axial step of a 0.5 µm. White balancing was applied to each focal plane image. For each sample acquisition, an empty field of view (empty region of the slide not containing any blood cells) was acquired and considered as a white object reference.
DOI: 10.5522/04/13402301.v1
title: High Magnification Z-Stacks from Blood Films

description: All biological samples were collected from participants recruited under the auspices of the CMRG at the 800-bed tertiary hospital, UCH in the city of Ibadan, Nigeria, after after de-identification of the patient information. We trained and tested the CAMI-Fusion network on three different types of samples: (a) Giemsa-stained thick blood films (TBF) and (b) Giemsa-stained peripheral blood smears (PBS) for malaria parasite detection as well as (c) Wright-stained Bone Marrow Aspirates (BMA) for diagnosing blood cancers.<i><br></i><i>Image acquisition and pre-processing:</i> We used an upright brightfield microscope (BX63, Olympus, 100W halogen bulb light source) with a 100X/1.4NA oil immersion objective (MPlanApoN, Olympus) and a color digital camera (Edge 5.5C, PCO) to acquire multiple high-resolution z-stacks with an axial step of a 0.5 µm. White balancing was applied to each focal plane image. For each sample acquisition, an empty field of view (empty region of the slide not containing any blood cells) was acquired and considered as a white object reference.
DOI: 10.5281/zenodo.5816997
title: Caucasus glacier mass balance and thickness changes in 2000-2019

description: In this study, we used glacier mass balance and thickness data obtained from geodetic method by Hugonnet et al. (2021) to clarify the response of region wide glacier mass balance to climate change in the Greater Caucasus over the last two decades (2000‒2019). We also analyze the long-term spatio-temporal glacier surface elevation and specific mass change for the regional, river basin, and individual glaciers. Besides, we provide a key dataset (shp file) that can be useful for further studies, including for example, hydrological modeling of runoff changes, as well as for the implementation of water management plans in this region.
DOI: 10.15468/tp8mqt
title: New and interesting species of Agaricomycetes from Panama

description: This dataset contains the digitized treatments in Plazi based on the original journal article Reschke, Kai, Lotz-Winter, Hermine, Fischer, Christian W., Hofmann, Tina A., Piepenbring, Meike (2021): New and interesting species of Agaricomycetes from Panama. Phytotaxa 529 (1): 1-26, DOI: 10.11646/phytotaxa.529.1.1
DOI: 10.6084/m9.figshare.13546860
title: Effects of spatial confinement on migratory properties of Dictyostelium discoideum cells

description: Migratory environments of various eukaryotic cells, such as amoeba, leukocytes and cancer cells, typically involve spatial confinement. Numerous studies have recently emerged, aimed to develop experimental platforms that better recapitulate the characteristics of the cellular microenvironment. Using microfluidic technologies, we show that increasing confinement of Dictyostelium discoideum cells into narrower micro-channels resulted in a significant change in the mode of migration and associated arrangement of the actomyosin cytoskeleton. We observed that cells tended to migrate at constant speed, the magnitude of which was dependent on the size of the channels, as was the locomotory strategy adopted by each cell. Two different migration modes were observed, pseudopod-based and bleb-based migration, with bleb based migration being more frequent with increasing confinement and leading to slower migration. Beside the migration mode, we found that the major determinants of cell speed are its protrusion rate, the amount of F-actin at its leading edge and the number of actin foci. Our results highlighted the impact of the microenvironments on cell behavior. Furthermore, we developed a novel quantitative movement analysis platform for mono-dimensional cell migration that allows for standardization and simplification of the experimental conditions and aids investigation of the complex and dynamic processes occurring at the single-cell level.
DOI: 10.6084/m9.figshare.13546860.v3
title: Effects of spatial confinement on migratory properties of Dictyostelium discoideum cells

description: Migratory environments of various eukaryotic cells, such as amoeba, leukocytes and cancer cells, typically involve spatial confinement. Numerous studies have recently emerged, aimed to develop experimental platforms that better recapitulate the characteristics of the cellular microenvironment. Using microfluidic technologies, we show that increasing confinement of Dictyostelium discoideum cells into narrower micro-channels resulted in a significant change in the mode of migration and associated arrangement of the actomyosin cytoskeleton. We observed that cells tended to migrate at constant speed, the magnitude of which was dependent on the size of the channels, as was the locomotory strategy adopted by each cell. Two different migration modes were observed, pseudopod-based and bleb-based migration, with bleb based migration being more frequent with increasing confinement and leading to slower migration. Beside the migration mode, we found that the major determinants of cell speed are its protrusion rate, the amount of F-actin at its leading edge and the number of actin foci. Our results highlighted the impact of the microenvironments on cell behavior. Furthermore, we developed a novel quantitative movement analysis platform for mono-dimensional cell migration that allows for standardization and simplification of the experimental conditions and aids investigation of the complex and dynamic processes occurring at the single-cell level.
DOI: 10.6084/m9.figshare.16586274.v2
title: The search for molecular mimicry in proteins carried by extracellular vesicles secreted by cells infected with <i>Plasmodium falciparum</i>

description: Red blood cells infected with <i>Plasmodium falciparum</i> secrete extracellular vesicles in order to facilitate the survival and infection of human cells. Various researchers have studied the composition of these extracellular vesicles and identified the proteins contained inside. In this work, we used that information to detect potential <i>P. falciparum</i> molecules that could be imitating host proteins. We carried out several searches to detect sequences and structural similarities between the parasite and host. Additionally, the possibility of functional mimicry was explored in line with the potential role that each candidate can perform for the parasite inside the host. Lastly, we determined a set of eight sequences (mainly moonlighting proteins) with a remarkable resemblance to human proteins. Due to the resemblance observed, this study proposes the possibility that certain <i>P. falciparum</i> molecules carried by extracellular vesicles could be imitating human proteins to manipulate the host cell’s physiology.
DOI: 10.6084/m9.figshare.16586274
title: The search for molecular mimicry in proteins carried by extracellular vesicles secreted by cells infected with <i>Plasmodium falciparum</i>

description: Red blood cells infected with <i>Plasmodium falciparum</i> secrete extracellular vesicles in order to facilitate the survival and infection of human cells. Various researchers have studied the composition of these extracellular vesicles and identified the proteins contained inside. In this work, we used that information to detect potential <i>P. falciparum</i> molecules that could be imitating host proteins. We carried out several searches to detect sequences and structural similarities between the parasite and host. Additionally, the possibility of functional mimicry was explored in line with the potential role that each candidate can perform for the parasite inside the host. Lastly, we determined a set of eight sequences (mainly moonlighting proteins) with a remarkable resemblance to human proteins. Due to the resemblance observed, this study proposes the possibility that certain <i>P. falciparum</i> molecules carried by extracellular vesicles could be imitating human proteins to manipulate the host cell’s physiology.
DOI: 10.6084/m9.figshare.13546860.v2
title: Effects of spatial confinement on migratory properties of Dictyostelium discoideum cells

description: Migratory environments of various eukaryotic cells, such as amoeba, leukocytes and cancer cells, typically involve spatial confinement. Numerous studies have recently emerged, aimed to develop experimental platforms that better recapitulate the characteristics of the cellular microenvironment. Using microfluidic technologies, we show that increasing confinement of Dictyostelium discoideum cells into narrower micro-channels resulted in a significant change in the mode of migration and associated arrangement of the actomyosin cytoskeleton. We observed that cells tended to migrate at constant speed, the magnitude of which was dependent on the size of the channels, as was the locomotory strategy adopted by each cell. Two different migration modes were observed, pseudopod-based and bleb-based migration, with bleb based migration being more frequent with increasing confinement and leading to slower migration. Beside the migration mode, we found that the major determinants of cell speed are its protrusion rate, the amount of F-actin at its leading edge and the number of actin foci. Our results highlighted the impact of the microenvironments on cell behavior. Furthermore, we developed a novel quantitative movement analysis platform for mono-dimensional cell migration that allows for standardization and simplification of the experimental conditions and aids investigation of the complex and dynamic processes occurring at the single-cell level.
DOI: 10.6084/m9.figshare.16586274.v1
title: The search for molecular mimicry in proteins carried by extracellular vesicles secreted by cells infected with <i>Plasmodium falciparum</i>

description: Red blood cells infected with <i>Plasmodium falciparum</i> secrete extracellular vesicles in order to facilitate the survival and infection of human cells. Various researchers have studied the composition of these extracellular vesicles and identified the proteins contained inside. In this work, we used that information to detect potential <i>P. falciparum</i> molecules that could be imitating host proteins. We carried out several searches to detect sequences and structural similarities between the parasite and host. Additionally, the possibility of functional mimicry was explored in line with the potential role that each candidate can perform for the parasite inside the host. Lastly, we determined a set of eight sequences (mainly moonlighting proteins) with a remarkable resemblance to human proteins. Due to the resemblance observed, this study proposes the possibility that certain <i>P. falciparum</i> molecules carried by extracellular vesicles could be imitating human proteins to manipulate the host cell’s physiology.
DOI: 10.34622/datarepositorium/uy7mfa/ptjznf
title: AboutThisDataset.tab

description: Dataset description
DOI: 10.34622/datarepositorium/uy7mfa/ofpwzy
title: ResultsSurvey_OGDUseBRStatesDF_Dataset_EN.tab

description: Dataset in English
DOI: 10.34622/datarepositorium/uy7mfa/rwi9hl
title: ResultsSurvey_OGDUseBRStatesDF_Dataset_PT.tab

description: Dataset em Português
DOI: 10.34622/datarepositorium/uy7mfa/jquusm
title: ResultsSurvey_OGDUseBRStatesDF_Metadata_EN.tab

description: Metadata in English
DOI: 10.34622/datarepositorium/uy7mfa/t4uu69
title: ResultsSurvey_OGDUseBRStatesDF_Metadata_PT.tab

description: Metadados em Português
DOI: 10.34622/datarepositorium/uy7mfa/t7ey8c
title: ResultsSurvey_OGDUseBRStatesDF_PT_EN_DataSetComplete.tab

description: Excel spreadsheet containing all data and metadata in separate sheets
DOI: 10.22008/fk2/dqzif7/tuzln4
title: 2019_CEN-S5.zip

description: 15-second GPS data of raw daily files collected at S5 stake during spring 2019.
DOI: 10.22008/fk2/dqzif7/ye1l1j
title: 2021_CEN-GPS.zip

description: 15-second GNSS data (GPS and Glonass) raw data in hourly files and rinex v3.03 in daily files, when available during the year.
DOI: 10.22008/fk2/dqzif7/hqrbfa
title: 2019_CEN-GPS.zip

description: 15-second GNSS data (GPS and Glonass) raw data in hourly files and rinex v3.03 in daily files, when available during the year.
DOI: 10.22008/fk2/dqzif7/vezpr5
title: 2020_CEN-GPS.zip

description: 15-second GNSS data (GPS and Glonass) raw data in hourly files and rinex v3.03 in daily files, when available during the year.
DOI: 10.22008/fk2/dqzif7/ffa3sy
title: 2017_CEN_strain_net.zip

description: 15-second GPS data of raw daily files collected at the S1-S7 strain network during summer 2017. Plus strain network field notes.
DOI: 10.22008/fk2/dqzif7/w50him
title: overview_survey_locations.png

description: Map overview of the GNSS survey locations at Camp Century: CEN, CEN-GPS and the seven-stake strain network (S1, S2, S3, S4, S5, S6 and S7).
DOI: 10.25919/hyfa-dp58
title: East Australian Current gridded (depth, distance and time) mooring product

description: This daily-, distance- and depth-gridded product of currents, temperature and salinity is produced from the SOM-filled EAC individual mooring data product in the links section below. The data can be used to produce volume and heat transport time series across the entire EAC.
DOI: 10.25919/54bm-b331
title: East Australian Current individual mooring gridded product - daily and 10m depth gridded

description: This daily- and depth-gridded product of currents, temperature and salinity (one file per mooring) is produced from individual instrument files collected during five 18-month deployments in the East Australian Current (EAC) off Brisbane, Australia. As described in the 'Lineage' Section, there are two versions of each variable (TEMP, UCUR, VCUR, PSAL) in these files. One has missing data with fill values and the *_FILLED variable has missing data filled using a neural network Self Organising Maps (SOM). The data can be used for time series analysis of individual moorings in the EAC deployments. The East Australian Current gridded (depth, distance and time) mooring product is described and available at the link below.
DOI: 10.25451/flinders.17819714
title: Validation of the Consumer Health Activation Index (CHAI) in general population samples of older Australian adults: Study 1 and 3 dataset

description: Study 1 (Exploratory factor analysis) and study 3 (Validity - relationship to health-promoting behaviour) dataset
DOI: 10.25451/flinders.17819714.v1
title: Validation of the Consumer Health Activation Index (CHAI) in general population samples of older Australian adults: Study 1 and 3 dataset

description: Study 1 (Exploratory factor analysis) and study 3 (Validity - relationship to health-promoting behaviour) dataset
DOI: 10.25451/flinders.17824715
title: Validation of the Consumer Health Activation Index (CHAI) in general population samples of older Australian adults: Study 2 dataset

description: Study 2 (Confirmatory factor analysis) dataset
DOI: 10.25451/flinders.17824715.v1
title: Validation of the Consumer Health Activation Index (CHAI) in general population samples of older Australian adults: Study 2 dataset

description: Study 2 (Confirmatory factor analysis) dataset
DOI: 10.15468/5ehg99
title: Dothidea kunmingensis, a novel asexual species of Dothideaceae on Jasminum nudiflorum (winter jasmine) from Southwestern China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gao, Ying, Monkai, Jutamart, Gentekaki, Eleni, Ren, Guang-Cong, Wanasinghe, Dhanushka N., Xu, Jian-Chu, Gui, Heng (2021): Dothidea kunmingensis, a novel asexual species of Dothideaceae on Jasminum nudiflorum (winter jasmine) from Southwestern China. Phytotaxa 529 (1): 43-56, DOI: 10.11646/phytotaxa.529.1.3
DOI: 10.17637/rh.16802449
title: Pore Scale GCS Numerical Modelling Output, Analyses and Source Code

description: This folder contains the output in CSV format of the numerical simulations, the python scripts to analyse the output as well as the source code for the model itself for the article: 'Pore Scale Numerical Modelling of Geological Carbon Storage Through Mineral Trapping Using True Pore Geometries' by Ryan L. Payton, Yizhuo Sun, Domenico Chiarella and Andrew Kingdon. <br> This folder contains all of the numerical simulation outputs and scripts for analysis generated during the aforementioned study. Please see the article for a detailed methodology.