cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17910325
title: Signal Strength Aware Latent Spaces Reveal Molecularly Distinct Substructures within Human Kidney Tissue

description: This data repository contains data required to run one of the example notebooks in the sisal package.

The SiSAL package is an approach based on the beta-variational autoencoder and kernel density estimation to dissect data along independent, uncertainty-aware, and interpretable (yet non-linear) latent axes. It includes a novel comparative-latent-traversal algorithm to translate latent findings back into the original measurement context. You can find demonstration in the /experiments folder. It includes an imaging mass spectrometry-based molecular imaging of human kidney and a synthetic dataset. The approach’s disentangling properties are shown to impress a latent space structure that separates signal strength from relative signal content, offering exceptional chemical insight.

 

Data included:



centroids.h5 - A HDF5 file containing ion images in a matrix format. The ion images correspond to the set of images presented in our HuBMAP Kidney Atlas. 

normalizations.h5 - A HDF5 file containing the normalization factors that can be applied to the ion images. 

image_info.npz - a compressed numpy (Python) file containing information about the ion images. Metadata such as image shape or the total number of pixels in a dataset

Collecting_duct.h5 - A HDF5 file contianing mask of the Collecting Duct.

Descending_Thin_Limb.h5 - A HDF5 file contianing mask of the Thin Descending Limb.

Distal_Tubule.h5 - A HDF5 file contianing mask of the Distal Tubule.

Glomerulus.h5 - A HDF5 file contianing mask of the Glomerulus.

Proximal_Tubule.h5 - A HDF5 file contianing mask of the Proximal Tubule.

Thick_Ascending_Limb.h5 - A HDF5 file contianing mask of the Thick Ascending Limb.


 

For information about the data collection, please refer to the HuBMAP Kidney Atlas.
DOI: 10.5281/zenodo.18257357
title: ЛИЧНЫЕ МЕСТОИМЕНИЯ В СВЕТЕ ИНТЕГРАЛЬНОГО ОПИСАНИЯ ЯЗЫКА

description: Личные местоимения в свете интегрального описания языка рассматриваются не просто как заменители существительных, а через призму их коммуникативно-прагматических, лингвокультурологических и когнитивных аспектов, раскрывая их роль в диалоге, связь с человеческим сознанием, культурными особенностями и дискурсивными функциями, выходя за рамки чисто морфологических категорий (лицо, число).
DOI: 10.5281/zenodo.18257356
title: ЛИЧНЫЕ МЕСТОИМЕНИЯ В СВЕТЕ ИНТЕГРАЛЬНОГО ОПИСАНИЯ ЯЗЫКА

description: Личные местоимения в свете интегрального описания языка рассматриваются не просто как заменители существительных, а через призму их коммуникативно-прагматических, лингвокультурологических и когнитивных аспектов, раскрывая их роль в диалоге, связь с человеческим сознанием, культурными особенностями и дискурсивными функциями, выходя за рамки чисто морфологических категорий (лицо, число).
DOI: 10.15468/dl.wr4vwa
title: Occurrence Download

description: A dataset containing 634 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhodeus amarus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2025",
 "Year is less than or equal to 2026"
 ]
}

 The dataset includes 634 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011879-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sz6yjq
title: Occurrence Download

description: A dataset containing 319968 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Castanea sativa",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 319968 records from 1629 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011819-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pv8n9e
title: Occurrence Download

description: A dataset containing 498 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carthamus lanatus",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 498 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038380-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6abxx
title: Occurrence Download

description: A dataset containing 1875 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Penstemon serrulatus"
 ]
}

 The dataset includes 1875 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038381-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8frdbd
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carthamus lanatus",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 51 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038385-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxj43e
title: Occurrence Download

description: A dataset containing 635 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Camissonia kernensis"
 ]
}

 The dataset includes 635 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038383-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66euxf
title: Occurrence Download

description: A dataset containing 1217 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peperomia urvilleana"
 ]
}

 The dataset includes 1217 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038384-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmy47a
title: Occurrence Download

description: A dataset containing 7626 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peperomia glabella"
 ]
}

 The dataset includes 7626 records from 259 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038382-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hmzsj9
title: Occurrence Download

description: A dataset containing 2689 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Camissonia strigulosa"
 ]
}

 The dataset includes 2689 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038386-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r36qnj
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carthamus lanatus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 292 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038387-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcy327
title: Occurrence Download

description: A dataset containing 2654 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Triticum timopheevii"
 ]
}

 The dataset includes 2654 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038388-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.earrmb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monodactylus sebae",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038389-250811113504898/datasets/export for details.
DOI: 10.15468/dl.aw85zr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monodactylus sebae",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038390-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5s53ha
title: Occurrence Download

description: A dataset containing 5220 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peperomia rotundifolia"
 ]
}

 The dataset includes 5220 records from 266 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038391-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5sqwq
title: Occurrence Download

description: A dataset containing 1724 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Camissonia contorta"
 ]
}

 The dataset includes 1724 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038392-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4cebgs
title: Occurrence Download

description: A dataset containing 3371 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Camissonia campestris"
 ]
}

 The dataset includes 3371 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038394-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shgbr2
title: Occurrence Download

description: A dataset containing 1363 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perezia multiflora"
 ]
}

 The dataset includes 1363 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038396-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5sqwxt
title: Occurrence Download

description: A dataset containing 7739 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gypsophila paniculata"
 ]
}

 The dataset includes 7739 records from 437 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038393-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8rdhx
title: Occurrence Download

description: A dataset containing 3727 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peperomia blanda"
 ]
}

 The dataset includes 3727 records from 257 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038395-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e218342
title: National Survey of Drug Use and Health

description: Public Use Files from NSDUH 1979 to 2023
DOI: 10.3886/e218342v2-179081
title: National Survey of Drug Use and Health

description: Public Use Files from NSDUH 1979 to 2023
DOI: 10.15468/dl.gznbcg
title: Occurrence Download

description: A dataset containing 23087 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Solanum lycopersicum L.",
 "Year 1979-2019"
 ]
}

 The dataset includes 23087 records from 475 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011128-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7pr5u
title: Occurrence Download

description: A dataset containing 354 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus alnifolia Poech"
 ]
}

 The dataset includes 354 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011129-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ngvnm5tty7.1
title: SIRT7 regulates NUCKS1 chromatin binding to elicit metabolic and inflammatory gene expression in senescence and liver aging

description: Sirtuins enzymes are heavily implicated in senescence and aging. The regulation of sirtuin proteins is tightly controlled but how sirtuin levels are regulated during aging and how they elicit tissue-specific cellular changes are unclear. We demonstrate that SIRT7 is targeted for degradation during senescence and is regulated by E3 Ligase TRIP12. We identified transcription factor NUCKS1 interacts with SIRT7 and is recruited onto chromatin during senescence. This is mediated by SIRT7 loss and subsequent increase of NUCKS1 acetylation. NUCKS1 depletion delayed senescence leading to reduced inflammatory gene expression associated with RELA, and CEBP. In Sirt7 KO mouse and aged livers, NUCKS1 was bound at promoters and enhancers of age-related genes and these regions gain accessibility during aging. Overall, our results uncover NUCKS1 as a interactor of SIRT7 and proteosomal loss of SIRT7 during senescence and liver aging promotes NUCKS1 acetylation and chromatin binding to induce metabolic and inflammatory genes.
DOI: 10.34740/kaggle/dsv/11893121
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.cequj8
title: Occurrence Download

description: A dataset containing 9576 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Falco cherrug J.E.Gray, 1834"
 ]
}

 The dataset includes 9576 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002687-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/hgd-5h4-5r8
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ma7-zgb-2hk
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/efn-prw-j82
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pd5-4qj-qqf
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yx7-q3z-06r
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yx9-z4h-v07
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fpg-l86-xq5
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hz6-46x-zq8
title: Helarctos malayanus (Raffles, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kj2-g6p-427
title: Maianthemum F.H.Wigg.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l5z-0l5-rxh
title: Elephas maximus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gyp-6yf-2z9
title: Phyllolepidum Trinajstic

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dw8-arj-h0b
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n9q-ht7-30p
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1v1-xhm-80m
title: Rusa C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nvc-l97-869
title: Lepidophyllum Cass.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/em9-agy-bfn
title: Maianthemum F.H.Wigg.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ymg-5lw-rny
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nlj-g7q-5z7
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wwp-3g0-eyz
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6c3-lne-z05
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pdx-9dm-jnw
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/59x-63w-qj5
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4xa-erv-tvl
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lqy-009-mfr
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mfm-kzz-zf0
title: Muntiacus muntjak (Zimmermann, 1780)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sgc-c56-1de
title: Lepidophyllum Cass.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/428-khn-h44
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8dk-1z0-c7e
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rfn-ml5-kds
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b4t-w67-zrv
title: Rhinoceros sondaicus Desmarest, 1822

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q5p-4eg-682
title: Emydidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mgl-z4g-vta
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0sq-xc8-l5f
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dn8-q83-gx8
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wgr-8hf-p87
title: Cuon Hodgson, 1838

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xke-m19-ej3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tzg-fns-3et
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w0j-d1r-45b
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7ws-lcr-rkk
title: Muntiacus muntjak (Zimmermann, 1780)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/19k-jj2-x8t
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1t2-rtc-dpe
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kt0-yeq-5sf
title: Rusa C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.x3st87
title: Occurrence Download

description: A dataset containing 3130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((107.94655 9.19224,124.46103 28.85948,172.05275 28.70936,135.12037 69.54516,77.61996 35.16501,92.03259 16.9991,107.94655 9.19224))",
 "TaxonKey is Phtheirospermum japonicum"
 ]
}

 The dataset includes 3130 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029090-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6n8j3
title: Occurrence Download

description: A dataset containing 5866 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Amelanchier ovalis"
 ]
}

 The dataset includes 5866 records from 245 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029093-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18419/darus-5045
title: Replication data of A8 group for "Linker-Cluster Cooperativity in Confinement of Proline-Functionalized Zr-Based Metal-Organic Frameworks and its Effect on the Organocatalytic Aldol Reaction"

description: In this study the combined theoretical and experimental approach Zr-UiO-67-MOFs with ortho-N-acylproline-functionalized biphenyl-dicarboxylate linkers were prepared and compared with the corresponding MOFs with regioisomeric meta-linkers is reported. All primary data files of measurements and processed data of the journal article mentioned under related publications from A8 group can be found here. The data is structured according to figures and schemes in the research article and contains the following data types: NMR spectra.
DOI: 10.15468/dl.j8qrmy
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-90 5,-55 5,-55 30,-90 30,-90 5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Artocarpus altilis (Parkinson) Fosberg",
 "Year 1991-2020"
 ]
}

 The dataset includes 220 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006519-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.