cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3552108
title: Appendix A. Diagram of terrestrial arthropod food web found at Helluvaðstjörn.

description: Diagram of terrestrial arthropod food web found at Helluvaðstjörn.
DOI: 10.6084/m9.figshare.3552108.v1
title: Appendix A. Diagram of terrestrial arthropod food web found at Helluvaðstjörn.

description: Diagram of terrestrial arthropod food web found at Helluvaðstjörn.
DOI: 10.6084/m9.figshare.3552105
title: Appendix B. Taxonomic list of arthropods identified in vacuum samples in experimental plots at Helluvaðstjörn.

description: Taxonomic list of arthropods identified in vacuum samples in experimental plots at Helluvaðstjörn.
DOI: 10.6084/m9.figshare.3552105.v1
title: Appendix B. Taxonomic list of arthropods identified in vacuum samples in experimental plots at Helluvaðstjörn.

description: Taxonomic list of arthropods identified in vacuum samples in experimental plots at Helluvaðstjörn.
DOI: 10.6084/m9.figshare.3552102
title: Appendix C. ANOVA table for total arthropods and arthropod biomass, and each taxonomic group reported in the text for both years of the experiment.

description: ANOVA table for total arthropods and arthropod biomass, and each taxonomic group reported in the text for both years of the experiment.
DOI: 10.6084/m9.figshare.3552102.v1
title: Appendix C. ANOVA table for total arthropods and arthropod biomass, and each taxonomic group reported in the text for both years of the experiment.

description: ANOVA table for total arthropods and arthropod biomass, and each taxonomic group reported in the text for both years of the experiment.
DOI: 10.6084/m9.figshare.3552099
title: Appendix A. Estimations of source contributions from MixSIR model for Poecilla mexicana from the sulfidic cave, sulfidic surface stream, non-sulfidic cave, and non-sulfidic surface stream.

description: Estimations of source contributions from MixSIR model for Poecilla mexicana from the sulfidic cave, sulfidic surface stream, non-sulfidic cave, and non-sulfidic surface stream.
DOI: 10.6084/m9.figshare.3552099.v1
title: Appendix A. Estimations of source contributions from MixSIR model for Poecilla mexicana from the sulfidic cave, sulfidic surface stream, non-sulfidic cave, and non-sulfidic surface stream.

description: Estimations of source contributions from MixSIR model for Poecilla mexicana from the sulfidic cave, sulfidic surface stream, non-sulfidic cave, and non-sulfidic surface stream.
DOI: 10.6084/m9.figshare.3552096
title: Appendix A. Discussion on large-sample theory, derivation of variances of response ratios from factorial designs, raw data used in examples, and variance-covariance matrices used to estimate the covariance between two response ratios.

description: Discussion on large-sample theory, derivation of variances of response ratios from factorial designs, raw data used in examples, and variance-covariance matrices used to estimate the covariance between two response ratios.
DOI: 10.6084/m9.figshare.3552093
title: Appendix A. CMR (capture-mark-recapture) analyses: goodness-of-fit tests and modeling approach for the eastern chipmunk, Tamias striatus.

description: CMR (capture-mark-recapture) analyses: goodness-of-fit tests and modeling approach for the eastern chipmunk, Tamias striatus.
DOI: 10.6084/m9.figshare.3552093.v1
title: Appendix A. CMR (capture-mark-recapture) analyses: goodness-of-fit tests and modeling approach for the eastern chipmunk, Tamias striatus.

description: CMR (capture-mark-recapture) analyses: goodness-of-fit tests and modeling approach for the eastern chipmunk, Tamias striatus.
DOI: 10.6084/m9.figshare.3552090
title: Appendix B. Estimating population size.

description: Estimating population size.
DOI: 10.6084/m9.figshare.3552087
title: Appendix C. Table of the best-fitted models of survival rates and recaptures probabilities; figures on the relationship between observed and known-alive resident adults, and on the relationship between population growth and the number of juveniles.

description: Table of the best-fitted models of survival rates and recaptures probabilities; figures on the relationship between observed and known-alive resident adults, and on the relationship between population growth and the number of juveniles.
DOI: 10.6084/m9.figshare.3552084
title: Appendix A. Photographs of experimental vegetation islands.

description: Photographs of experimental vegetation islands.
DOI: 10.6084/m9.figshare.3552081
title: Appendix B. Parasitoid diversity data showing percentage of parasitoid species reared from Liriomyza helianthi and Calcomyza platyptera.

description: Parasitoid diversity data showing percentage of parasitoid species reared from Liriomyza helianthi and Calcomyza platyptera.
DOI: 10.6084/m9.figshare.3552084.v1
title: Appendix A. Photographs of experimental vegetation islands.

description: Photographs of experimental vegetation islands.
DOI: 10.6084/m9.figshare.3552081.v1
title: Appendix B. Parasitoid diversity data showing percentage of parasitoid species reared from Liriomyza helianthi and Calcomyza platyptera.

description: Parasitoid diversity data showing percentage of parasitoid species reared from Liriomyza helianthi and Calcomyza platyptera.
DOI: 10.6084/m9.figshare.3552078
title: Appendix C. Results of generalized mixed-effect models.

description: Results of generalized mixed-effect models.
DOI: 10.6084/m9.figshare.3552075
title: Appendix D. Results of parasitoid host choice experiment.

description: Results of parasitoid host choice experiment.
DOI: 10.6084/m9.figshare.3552078.v1
title: Appendix C. Results of generalized mixed-effect models.

description: Results of generalized mixed-effect models.
DOI: 10.6084/m9.figshare.3552075.v1
title: Appendix D. Results of parasitoid host choice experiment.

description: Results of parasitoid host choice experiment.
DOI: 10.6084/m9.figshare.3552072
title: Appendix A. Detailed methods for “novel fungal genotypes”.

description: Detailed methods for “novel fungal genotypes”.
DOI: 10.6084/m9.figshare.3552072.v1
title: Appendix A. Detailed methods for “novel fungal genotypes”.

description: Detailed methods for “novel fungal genotypes”.
DOI: 10.6084/m9.figshare.3552069
title: Appendix B. Tables and figures for “novel fungal genotypes”.

description: Tables and figures for “novel fungal genotypes”.
DOI: 10.6084/m9.figshare.3552069.v1
title: Appendix B. Tables and figures for “novel fungal genotypes”.

description: Tables and figures for “novel fungal genotypes”.
DOI: 10.6084/m9.figshare.3552066
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3552063
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3552066.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3552063.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3552060
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3552057
title: Data Paper. Data Paper

description: File List Dutchagroecosystems.txt<br> Traitsoilnematofauna.txt Description Soil life is complex, and huge body-size changes of organisms like soil nematodes remain enigmatic along environmental gradients and across ecosystems. Such a knowledge gap is surprising, given the importance of these invertebrates for ecosystem functioning. Moreover, differences in the biological stoichiometry between terrestrial systems are still poorly understood. Within one of the most intensive ecological soil surveys worldwide ever, containing 29552 individual records, we monitored the nematodes of 200 rural and natural areas in The Netherlands. In addition to the body length, width, and estimated mass of nematodes, this data set includes information on taxonomy, life stage, sex, feeding habit, trophic level, geographic location, sampling period, ecosystem type, soil type, and soil chemistry (pH, organic carbon, and total nitrogen and phosphorus contents). Physical, chemical, and biological information was organized over different categories regarding four soil types and three land-use types (resulting in seven combinations). Of the soil nematodes 70.8% were juveniles, 15.9% females, 5.5% males, and 7.8% Dauer larvae. Our empirical data set shows that the responses of the nematodes’ body mass to a 50-fold change in the soil molar C:P ratio were as strong as the same trait responses to a four orders-of-magnitude change in the H+ concentration in the soil. Traits like body lengths are so dependent on the life stage (here, adult vs. juvenile) that they must be taken into careful account for modeling predator–prey relationships, since nematodes are well represented in all feeding levels of the soil food webs. Traits from this novel data set can be helpful in determining habitat–response relationships, predicting effects of biological stoichiometry, and understanding the dynamics of ecosystems.<br> <br> Key words: <i>agroecosystems; biological stoichiometry; ecological stoichiometry; ecosystem types; feeding habits; nonparasitic nematodes; soil carbon; soil nitrogen; soil pH; soil phosphorus; soil types; trophic level.</i>
DOI: 10.6084/m9.figshare.3552060.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3552054
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3552054.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3552051
title: Appendix A. The derivation of Eq. 1 using nonlinear averaging of the survivorship function.

description: The derivation of Eq. 1 using nonlinear averaging of the survivorship function.
DOI: 10.6084/m9.figshare.3552051.v1
title: Appendix A. The derivation of Eq. 1 using nonlinear averaging of the survivorship function.

description: The derivation of Eq. 1 using nonlinear averaging of the survivorship function.
DOI: 10.6084/m9.figshare.3552048
title: Appendix B. The demonstration that the age-specific mean annual survival and population growth rate are not simple consequences of nonlinear averaging.

description: The demonstration that the age-specific mean annual survival and population growth rate are not simple consequences of nonlinear averaging.
DOI: 10.6084/m9.figshare.3552048.v1
title: Appendix B. The demonstration that the age-specific mean annual survival and population growth rate are not simple consequences of nonlinear averaging.

description: The demonstration that the age-specific mean annual survival and population growth rate are not simple consequences of nonlinear averaging.
DOI: 10.6084/m9.figshare.3552045
title: Appendix C. An analysis of a model with continuously distributed demographic traits.

description: An analysis of a model with continuously distributed demographic traits.
DOI: 10.6084/m9.figshare.3552045.v1
title: Appendix C. An analysis of a model with continuously distributed demographic traits.

description: An analysis of a model with continuously distributed demographic traits.
DOI: 10.6084/m9.figshare.3552042
title: Appendix D. A demonstration that mean life span fails to estimate mean survival in the heterogeneous population.

description: A demonstration that mean life span fails to estimate mean survival in the heterogeneous population.
DOI: 10.6084/m9.figshare.3552042.v1
title: Appendix D. A demonstration that mean life span fails to estimate mean survival in the heterogeneous population.

description: A demonstration that mean life span fails to estimate mean survival in the heterogeneous population.
DOI: 10.6084/m9.figshare.3552039
title: Appendix E. The loop analysis of the two-type model.

description: The loop analysis of the two-type model.
DOI: 10.6084/m9.figshare.3552036
title: Appendix A. Overall model matrices for both species of Mytilus.

description: Overall model matrices for both species of Mytilus.
DOI: 10.6084/m9.figshare.3552039.v1
title: Appendix E. The loop analysis of the two-type model.

description: The loop analysis of the two-type model.
DOI: 10.6084/m9.figshare.3552036.v1
title: Appendix A. Overall model matrices for both species of Mytilus.

description: Overall model matrices for both species of Mytilus.
DOI: 10.6084/m9.figshare.3552033
title: Appendix B. Life-stage simulation analysis distributions for both species of Mytilus.

description: Life-stage simulation analysis distributions for both species of Mytilus.
DOI: 10.6084/m9.figshare.3552033.v1
title: Appendix B. Life-stage simulation analysis distributions for both species of Mytilus.

description: Life-stage simulation analysis distributions for both species of Mytilus.
DOI: 10.6084/m9.figshare.3552027
title: Appendix C. Elasticity values and life-stage simulation analysis regression coefficients for each parameter in the overall model.

description: Elasticity values and life-stage simulation analysis regression coefficients for each parameter in the overall model.
DOI: 10.6084/m9.figshare.3552024
title: Appendix A. Details of sampling sites, position of sampling sites, description and photo of biozones in Moorea’s lagoon, and details of the biotic and abiotic attributes of coral bommies.

description: Details of sampling sites, position of sampling sites, description and photo of biozones in Moorea’s lagoon, and details of the biotic and abiotic attributes of coral bommies.
DOI: 10.6084/m9.figshare.3552021
title: Appendix B. Methods used for environmental measurements made during the field experiment and a description of the predator exclusion cages.

description: Methods used for environmental measurements made during the field experiment and a description of the predator exclusion cages.
DOI: 10.6084/m9.figshare.3552024.v1
title: Appendix A. Details of sampling sites, position of sampling sites, description and photo of biozones in Moorea’s lagoon, and details of the biotic and abiotic attributes of coral bommies.

description: Details of sampling sites, position of sampling sites, description and photo of biozones in Moorea’s lagoon, and details of the biotic and abiotic attributes of coral bommies.
DOI: 10.6084/m9.figshare.3552018
title: Appendix C. Details of statistical tests used to address hypotheses associated with population surveys, the demographic study, and the manipulative experiment; a table of describing all treatment factors used, ANOVAs, and multiple regression; and a table of ANOVA results.

description: Details of statistical tests used to address hypotheses associated with population surveys, the demographic study, and the manipulative experiment; a table of describing all treatment factors used, ANOVAs, and multiple regression; and a table of ANOVA results.
DOI: 10.6084/m9.figshare.3552021.v1
title: Appendix B. Methods used for environmental measurements made during the field experiment and a description of the predator exclusion cages.

description: Methods used for environmental measurements made during the field experiment and a description of the predator exclusion cages.
DOI: 10.6084/m9.figshare.3552018.v1
title: Appendix C. Details of statistical tests used to address hypotheses associated with population surveys, the demographic study, and the manipulative experiment; a table of describing all treatment factors used, ANOVAs, and multiple regression; and a table of ANOVA results.

description: Details of statistical tests used to address hypotheses associated with population surveys, the demographic study, and the manipulative experiment; a table of describing all treatment factors used, ANOVAs, and multiple regression; and a table of ANOVA results.
DOI: 10.6084/m9.figshare.3552015
title: Appendix D. A table showing the mean percentage of the branching corals Pocillopora verrucosa and Acropora retusa of three size classes found on bommies or the seafloor in the three major lagoon habitats.

description: A table showing the mean percentage of the branching corals Pocillopora verrucosa and Acropora retusa of three size classes found on bommies or the seafloor in the three major lagoon habitats.
DOI: 10.6084/m9.figshare.3552015.v1
title: Appendix D. A table showing the mean percentage of the branching corals Pocillopora verrucosa and Acropora retusa of three size classes found on bommies or the seafloor in the three major lagoon habitats.

description: A table showing the mean percentage of the branching corals Pocillopora verrucosa and Acropora retusa of three size classes found on bommies or the seafloor in the three major lagoon habitats.
DOI: 10.6084/m9.figshare.3552012
title: Appendix A. Further details on the estimation of the interspecific interaction coefficients, the local stability of the modeled community, and the effects of missing data on inference.

description: Further details on the estimation of the interspecific interaction coefficients, the local stability of the modeled community, and the effects of missing data on inference.
DOI: 10.6084/m9.figshare.3552012.v1
title: Appendix A. Further details on the estimation of the interspecific interaction coefficients, the local stability of the modeled community, and the effects of missing data on inference.

description: Further details on the estimation of the interspecific interaction coefficients, the local stability of the modeled community, and the effects of missing data on inference.
DOI: 10.6084/m9.figshare.3552009
title: Supplement 1. The WinBUGS code used to fit the Bayesian dynamic factor analysis (DFA) and the Gompertz stochastic community dynamics model.

description: File List WinBUGS_code.txt Description The WinBUGS_code.txt is an ASCII text file containing a sample WinBUGS code for fitting a Bayesian Dynamic Factor Analysis and a Gompertz stochastic community dynamics model to multi-species time series.
DOI: 10.6084/m9.figshare.3552009.v1
title: Supplement 1. The WinBUGS code used to fit the Bayesian dynamic factor analysis (DFA) and the Gompertz stochastic community dynamics model.

description: File List WinBUGS_code.txt Description The WinBUGS_code.txt is an ASCII text file containing a sample WinBUGS code for fitting a Bayesian Dynamic Factor Analysis and a Gompertz stochastic community dynamics model to multi-species time series.
DOI: 10.6084/m9.figshare.3552006
title: Appendix A. Results of linear mixed-effects models of within-individual changes in mass.

description: Results of linear mixed-effects models of within-individual changes in mass.
DOI: 10.6084/m9.figshare.3552006.v1
title: Appendix A. Results of linear mixed-effects models of within-individual changes in mass.

description: Results of linear mixed-effects models of within-individual changes in mass.
DOI: 10.6084/m9.figshare.3552003
title: Appendix A. A table showing mean invertebrate abundance in Stonefly Creek, together with the year the taxon was first collected in Wolf Point Creek.

description: A table showing mean invertebrate abundance in Stonefly Creek, together with the year the taxon was first collected in Wolf Point Creek.
DOI: 10.6084/m9.figshare.3552000
title: Appendix A. Histogram of foraging-trip duration in chick-rearing Little Penguins.

description: Histogram of foraging-trip duration in chick-rearing Little Penguins.
DOI: 10.6084/m9.figshare.3552003.v1
title: Appendix A. A table showing mean invertebrate abundance in Stonefly Creek, together with the year the taxon was first collected in Wolf Point Creek.

description: A table showing mean invertebrate abundance in Stonefly Creek, together with the year the taxon was first collected in Wolf Point Creek.
DOI: 10.6084/m9.figshare.3551997
title: Appendix A. Detailed methods for establishing the artificially reconstituted colonies of the social spider Anelosimus studiosus.

description: Detailed methods for establishing the artificially reconstituted colonies of the social spider Anelosimus studiosus.
DOI: 10.6084/m9.figshare.3551997.v1
title: Appendix A. Detailed methods for establishing the artificially reconstituted colonies of the social spider Anelosimus studiosus.

description: Detailed methods for establishing the artificially reconstituted colonies of the social spider Anelosimus studiosus.
DOI: 10.6084/m9.figshare.3551994
title: Appendix B. Figures depicting the relationship between egg case mass and number of eggs therein, and the egg case masses of aggressive vs. docile females in colonies of mixed behavioral type.

description: Figures depicting the relationship between egg case mass and number of eggs therein, and the egg case masses of aggressive vs. docile females in colonies of mixed behavioral type.
DOI: 10.6084/m9.figshare.3551994.v1
title: Appendix B. Figures depicting the relationship between egg case mass and number of eggs therein, and the egg case masses of aggressive vs. docile females in colonies of mixed behavioral type.

description: Figures depicting the relationship between egg case mass and number of eggs therein, and the egg case masses of aggressive vs. docile females in colonies of mixed behavioral type.
DOI: 10.6084/m9.figshare.3551991
title: Appendix A. Further details on the habitat-selection model of the Red Kite together with empirical results for monotonic effects from a simulation study.

description: Further details on the habitat-selection model of the Red Kite together with empirical results for monotonic effects from a simulation study.
DOI: 10.6084/m9.figshare.3551991.v1
title: Appendix A. Further details on the habitat-selection model of the Red Kite together with empirical results for monotonic effects from a simulation study.

description: Further details on the habitat-selection model of the Red Kite together with empirical results for monotonic effects from a simulation study.
DOI: 10.6084/m9.figshare.3551988
title: Supplement 1. R code for conducting statistical analysis of Red Kite distribution and for the simulation study.

description: File List simulation.R figures.R redkite/model_monotonic.R redkite/plot_fun.R redkite/bva.Rda redkite/variables.csv redkite/XY.RdaDescription "simulation.R" : This file contains R codes to perform the following: Set up and perform simulations as described in the Appendix. "figures.R" : This file contains R codes to perform the following: Produce figures presented in the paper based on the models fitted using "modelfit_monotonic.R". "modelfit_monotonic.R" : This file contains R codes to perform the following: Model fitting for Red Kite breeding data, once with monotonic constraint and once unconstrained. "plot_fun.R" : This file contains R codes to perform the following: Plotting functions to be used in "figures.R". "bva.Rda", "variables.csv" : These files are R and csv data files: Red Kite breeding data for Bavaria and the variable description. "redkite/XY.Rda" : This file is an R data file: Data required for plotting purposes only. Rda files can be loaded into R as in R&gt; load("bva.Rda")
DOI: 10.6084/m9.figshare.3551988.v1
title: Supplement 1. R code for conducting statistical analysis of Red Kite distribution and for the simulation study.

description: File List simulation.R figures.R redkite/model_monotonic.R redkite/plot_fun.R redkite/bva.Rda redkite/variables.csv redkite/XY.RdaDescription "simulation.R" : This file contains R codes to perform the following: Set up and perform simulations as described in the Appendix. "figures.R" : This file contains R codes to perform the following: Produce figures presented in the paper based on the models fitted using "modelfit_monotonic.R". "modelfit_monotonic.R" : This file contains R codes to perform the following: Model fitting for Red Kite breeding data, once with monotonic constraint and once unconstrained. "plot_fun.R" : This file contains R codes to perform the following: Plotting functions to be used in "figures.R". "bva.Rda", "variables.csv" : These files are R and csv data files: Red Kite breeding data for Bavaria and the variable description. "redkite/XY.Rda" : This file is an R data file: Data required for plotting purposes only. Rda files can be loaded into R as in R&gt; load("bva.Rda")
DOI: 10.6084/m9.figshare.3551985
title: Appendix A. Additional Monte Carlo simulations comparing the performance of LR and NLR estimation methods with hypothetical parameters.

description: Additional Monte Carlo simulations comparing the performance of LR and NLR estimation methods with hypothetical parameters.