cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10212828
title: Bacterial pathogens dynamic during multi-species infections

description: Illumina gapA sequences of synthetic communities of plant bacterial pathogens: Pectobacterium and Dickeya genus. Sequencing was performed after growth on TSB synthetic medium (2 days post inoculation) or growth on potato tubers (5 days post infection).

 

The following files are available:

PT_table.txt: description of the potato tubers samples

TSB_table.txt: description of samples in synthetic medium (TSB)

gapA_PT.fasta.gz: Illumina fasta sequences after potato tubers infection (35,000 reads)

gapA_TSB.fasta.gz: Illumina fasta sequences after synthetic medium inoculation (35,000 reads)

gapA_without_primers.fasta: gapA sequences (without primers) of Pectobacterium and Dickeya strains used in this study (27 strains)

species.txt: list of bacterial species used in this study (9 species)

strains.txt: list of bacterial strains used in this study (27 strains)

count.py: python3 script used to analyse the output of blastn

R_script_FigureS1.R: R script for statistical analysis

R_script_Figure2b.R: R script for statistical analysis

R_script_Figure2a.R: R script for statistical analysis

 

Method (examplified with the gapA_TSB sequences at the species level):

• gapA sequences were blasted (blastn) against gapA sequences of Pectobacterium and Dickeya strains used in this study:

makeblastdb -in gapA_without_primers.fasta -dbtype nucl -out dbblastn

blastn -db dbblastn -query gapA_TSB.fasta -outfmt 6 -out blast.blastn -num_threads 12 -evalue 0.00001 -num_alignments 1

• Reads count. Reads matching (100% identity) with gapA sequences of Pectobacterium and Dickeya strains used in this study were counted using the count.py python script. The output is a tab-separated values (.tsv) file:

python3 count.py species.txt blast.blastn
DOI: 10.5281/zenodo.10212829
title: Bacterial pathogens dynamic during multi-species infections

description: Illumina gapA sequences of synthetic communities of plant bacterial pathogens: Pectobacterium and Dickeya genus. Sequencing was performed after growth on TSB synthetic medium (2 days post inoculation) or growth on potato tubers (5 days post infection).
 
The following files are available:
PT_table.txt: description of the potato tubers samples
TSB_table.txt: description of samples in synthetic medium (TSB)
gapA_PT.fasta.gz: Illumina fasta sequences after potato tubers infection (35,000 reads)
gapA_TSB.fasta.gz: Illumina fasta sequences after synthetic medium inoculation (35,000 reads)
gapA_without_primers.fasta: gapA sequences (without primers) of Pectobacterium and Dickeya strains used in this study (27 strains)
species.txt: list of bacterial species used in this study (9 species)
strains.txt: list of bacterial strains used in this study (27 strains)
count.py: python3 script used to analyse the output of blastn
 
Method (examplified with the gapA_TSB sequences at the species level):
• gapA sequences were blasted (blastn) against gapA sequences of Pectobacterium and Dickeya strains used in this study:
makeblastdb -in gapA_without_primers.fasta -dbtype nucl -out dbblastn
blastn -db dbblastn -query gapA_TSB.fasta -outfmt 6 -out blast.blastn -num_threads 12 -evalue 0.00001 -num_alignments 1
• Reads count. Reads matching (100% identity) with gapA sequences of Pectobacterium and Dickeya strains used in this study were counted using the count.py python script. The output is a tab-separated values (.tsv) file:
python3 count.py species.txt blast.blastn
DOI: 10.5281/zenodo.10404740
title: Bacterial pathogens dynamic during multi-species infections

description: Illumina gapA sequences of synthetic communities of plant bacterial pathogens: Pectobacterium and Dickeya genus. Sequencing was performed after growth on TSB synthetic medium (2 days post inoculation) or growth on potato tubers (5 days post infection).

 

The following files are available:

PT_table.txt: description of the potato tubers samples

TSB_table.txt: description of samples in synthetic medium (TSB)

gapA_PT.fasta.gz: Illumina fasta sequences after potato tubers infection (35,000 reads)

gapA_TSB.fasta.gz: Illumina fasta sequences after synthetic medium inoculation (35,000 reads)

gapA_without_primers.fasta: gapA sequences (without primers) of Pectobacterium and Dickeya strains used in this study (27 strains)

species.txt: list of bacterial species used in this study (9 species)

strains.txt: list of bacterial strains used in this study (27 strains)

count.py: python3 script used to analyse the output of blastn

R_script_FigureS1.R: R script for statistical analysis

R_script_Figure2b.R: R script for statistical analysis

R_script_Figure2a.R: R script for statistical analysis

 

Method (examplified with the gapA_TSB sequences at the species level):

• gapA sequences were blasted (blastn) against gapA sequences of Pectobacterium and Dickeya strains used in this study:

makeblastdb -in gapA_without_primers.fasta -dbtype nucl -out dbblastn

blastn -db dbblastn -query gapA_TSB.fasta -outfmt 6 -out blast.blastn -num_threads 12 -evalue 0.00001 -num_alignments 1

• Reads count. Reads matching (100% identity) with gapA sequences of Pectobacterium and Dickeya strains used in this study were counted using the count.py python script. The output is a tab-separated values (.tsv) file:

python3 count.py species.txt blast.blastn
DOI: 10.34740/kaggle/dsv/7213687
title: Amazon Book Dataset:30000+ books with 30+ category
DOI: 10.5281/zenodo.10404896
title: Data for the paper Constraints on regional projections of mean and extreme precipitation under warming

description: Data for the paper " Constraints on regional projections of mean and extreme precipitation under warming"
DOI: 10.5281/zenodo.10404897
title: Data for the paper Constraints on regional projections of mean and extreme precipitation under warming

description: Data for the paper " Constraints on regional projections of mean and extreme precipitation under warming"
DOI: 10.25505/fiz.icsd.cc2cjwmf
title: CSD 2190975: Experimental Crystal Structure Determination

description: Related Article: Kai-Yao Wang, Yang Liu, Jia-Ying Zhu, Lin Cheng, Cheng Wang|2022|Inorg.Chem.|61|19106|doi:10.1021/acs.inorgchem.2c02594
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cjwng
title: CSD 2190976: Experimental Crystal Structure Determination

description: Related Article: Kai-Yao Wang, Yang Liu, Jia-Ying Zhu, Lin Cheng, Cheng Wang|2022|Inorg.Chem.|61|19106|doi:10.1021/acs.inorgchem.2c02594
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2c814v
title: CSD 2182466: Experimental Crystal Structure Determination

description: Related Article: Galina M. Kuz'micheva, Liudmila I. Ivleva, Irina A. Kaurova, Vladimir A. Lazarenko, Evgeny V. Khramov|2023|J.Solid State Chem.|318|123776|doi:10.1016/j.jssc.2022.123776
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2c813t
title: CSD 2182465: Experimental Crystal Structure Determination

description: Related Article: Galina M. Kuz'micheva, Liudmila I. Ivleva, Irina A. Kaurova, Vladimir A. Lazarenko, Evgeny V. Khramov|2023|J.Solid State Chem.|318|123776|doi:10.1016/j.jssc.2022.123776
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2c812s
title: CSD 2182464: Experimental Crystal Structure Determination

description: Related Article: Galina M. Kuz'micheva, Liudmila I. Ivleva, Irina A. Kaurova, Vladimir A. Lazarenko, Evgeny V. Khramov|2023|J.Solid State Chem.|318|123776|doi:10.1016/j.jssc.2022.123776
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cklm5
title: CSD 2191657: Experimental Crystal Structure Determination

description: Related Article: M. Ait Haddouch, N. Abboushi, N. Sharma, A. Eich, A. Grzechnik, C. Li, M. Tolkiehn, H. Alsamamra, J. Voigt, K. Friese|2022|J.Appl.Crystallogr.|55|1164|doi:10.1107/S1600576722007440
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2ckq3s
title: CSD 2191765: Experimental Crystal Structure Determination

description: Related Article: Spartak S. Yarovoy, Mariia Ivanova, Taisiya S. Sukhikh, Maxim R. Ryzhikov, Vladimir E. Fedorov, Nikolay G. Naumov|2022|Inorg.Chem.|61|20472|doi:10.1021/acs.inorgchem.2c03178
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2ckq4t
title: CSD 2191766: Experimental Crystal Structure Determination

description: Related Article: Spartak S. Yarovoy, Mariia Ivanova, Taisiya S. Sukhikh, Maxim R. Ryzhikov, Vladimir E. Fedorov, Nikolay G. Naumov|2022|Inorg.Chem.|61|20472|doi:10.1021/acs.inorgchem.2c03178
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cksmc
title: CSD 2191843: Experimental Crystal Structure Determination

description: Related Article: Ying Zhou, Long Chen, Yuxin Wang, Jinfeng Zhu, Zhongnan Guo, Chen Liu, Zhiying Guo, ChinWei Wang, Han Zhang, Yulong Wang, Ke Liao, Youting Song, Jia-ou Wang, Dongliang Chen, Jie Ma, Jiangping Hu, Gang Wang|2023|Inorg.Chem.|62|3788|doi:10.1021/acs.inorgchem.2c03870
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cktg7
title: CSD 2191869: Experimental Crystal Structure Determination

description: Related Article: Ying Zhou, Long Chen, Yuxin Wang, Jinfeng Zhu, Zhongnan Guo, Chen Liu, Zhiying Guo, ChinWei Wang, Han Zhang, Yulong Wang, Ke Liao, Youting Song, Jia-ou Wang, Dongliang Chen, Jie Ma, Jiangping Hu, Gang Wang|2023|Inorg.Chem.|62|3788|doi:10.1021/acs.inorgchem.2c03870
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cktkb
title: CSD 2191872: Experimental Crystal Structure Determination

description: Related Article: Ying Zhou, Long Chen, Yuxin Wang, Jinfeng Zhu, Zhongnan Guo, Chen Liu, Zhiying Guo, ChinWei Wang, Han Zhang, Yulong Wang, Ke Liao, Youting Song, Jia-ou Wang, Dongliang Chen, Jie Ma, Jiangping Hu, Gang Wang|2023|Inorg.Chem.|62|3788|doi:10.1021/acs.inorgchem.2c03870
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cl2bd
title: CSD 2192113: Experimental Crystal Structure Determination

description: Related Article: Xiuquan Zhou, Brandon Wilfong, Xinglong Chen, Craig Laing, Indra R. Pandey, Ying‐Pin Chen, Yu‐Sheng Chen, Duck‐Young Chung, Mercouri G. Kanatzidis|2023|Angew.Chem.,Int.Ed.|62|e202301191|doi:10.1002/anie.202301191
description: Related Article: Xiuquan Zhou|2022|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cl3cg
title: CSD 2192145: Experimental Crystal Structure Determination

description: Related Article: Xiuquan Zhou, Brandon Wilfong, Xinglong Chen, Craig Laing, Indra R. Pandey, Ying‐Pin Chen, Yu‐Sheng Chen, Duck‐Young Chung, Mercouri G. Kanatzidis|2023|Angew.Chem.,Int.Ed.|62|e202301191|doi:10.1002/anie.202301191
description: Related Article: Xiuquan Zhou|2022|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cl3mq
title: CSD 2192153: Experimental Crystal Structure Determination

description: Related Article: Xiuquan Zhou, Brandon Wilfong, Xinglong Chen, Craig Laing, Indra R. Pandey, Ying‐Pin Chen, Yu‐Sheng Chen, Duck‐Young Chung, Mercouri G. Kanatzidis|2023|Angew.Chem.,Int.Ed.|62|e202301191|doi:10.1002/anie.202301191
description: Related Article: Xiuquan Zhou|2022|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cl3nr
title: CSD 2192154: Experimental Crystal Structure Determination

description: Related Article: Xiuquan Zhou, Brandon Wilfong, Xinglong Chen, Craig Laing, Indra R. Pandey, Ying‐Pin Chen, Yu‐Sheng Chen, Duck‐Young Chung, Mercouri G. Kanatzidis|2023|Angew.Chem.,Int.Ed.|62|e202301191|doi:10.1002/anie.202301191
description: Related Article: Xiuquan Zhou|2022|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cl3ps
title: CSD 2192155: Experimental Crystal Structure Determination

description: Related Article: Xiuquan Zhou, Brandon Wilfong, Xinglong Chen, Craig Laing, Indra R. Pandey, Ying‐Pin Chen, Yu‐Sheng Chen, Duck‐Young Chung, Mercouri G. Kanatzidis|2023|Angew.Chem.,Int.Ed.|62|e202301191|doi:10.1002/anie.202301191
description: Related Article: Xiuquan Zhou|2022|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cl3qt
title: CSD 2192156: Experimental Crystal Structure Determination

description: Related Article: Xiuquan Zhou, Brandon Wilfong, Xinglong Chen, Craig Laing, Indra R. Pandey, Ying‐Pin Chen, Yu‐Sheng Chen, Duck‐Young Chung, Mercouri G. Kanatzidis|2023|Angew.Chem.,Int.Ed.|62|e202301191|doi:10.1002/anie.202301191
description: Related Article: Xiuquan Zhou|2022|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cl3rv
title: CSD 2192157: Experimental Crystal Structure Determination

description: Related Article: Xiuquan Zhou, Brandon Wilfong, Xinglong Chen, Craig Laing, Indra R. Pandey, Ying‐Pin Chen, Yu‐Sheng Chen, Duck‐Young Chung, Mercouri G. Kanatzidis|2023|Angew.Chem.,Int.Ed.|62|e202301191|doi:10.1002/anie.202301191
description: Related Article: Xiuquan Zhou|2022|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cl3sw
title: CSD 2192158: Experimental Crystal Structure Determination

description: Related Article: Xiuquan Zhou, Brandon Wilfong, Xinglong Chen, Craig Laing, Indra R. Pandey, Ying‐Pin Chen, Yu‐Sheng Chen, Duck‐Young Chung, Mercouri G. Kanatzidis|2023|Angew.Chem.,Int.Ed.|62|e202301191|doi:10.1002/anie.202301191
description: Related Article: Xiuquan Zhou|2022|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2cl4ch
title: CSD 2192176: Experimental Crystal Structure Determination

description: Related Article: Xiuquan Zhou, Brandon Wilfong, Xinglong Chen, Craig Laing, Indra R. Pandey, Ying‐Pin Chen, Yu‐Sheng Chen, Duck‐Young Chung, Mercouri G. Kanatzidis|2023|Angew.Chem.,Int.Ed.|62|e202301191|doi:10.1002/anie.202301191
description: Related Article: Xiuquan Zhou|2022|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.26188/24845328.v1
title: Series of weekly COVID-19 epidemic situational assessment reports submitted to the Australian Government Department of Health Office of Health Protection from April 2020 to December 2023.

description: Series of weekly COVID-19 situational assessment reports delivered over the period April 2020 through December 2023.The work was conducted under a series of official orders for the provision of Situational Awareness Modelling for COVID-19 from the Australian Government Department of Health to the University of Melbourne beginning in March 2020. The University of Melbourne was the lead contractor, with contributions delivered under contract from national situational assessment consortium partners.Situational assessment reports for the period from 4th April 2020 through 15th December 2023 were released to the public under agreement with the Commonwealth Government Department of Health on the University of Melbourne website on 18th December 2023.<br>
DOI: 10.6084/m9.figshare.24849666.v1
title: HyperDC Figure 5: Viscoelasticity of HL60 cells with Latrunculin B treatment

description: This dataset contains the raw measurement data for the measurements on HL60 cells with Latrunculin B treatmet in Reichel et al. "High-throughput viscoelastic characterization of cells in hyperbolic microchannels" (Fig. 5A-D), https://www.biorxiv.org/content/10.1101/2023.12.10.571005
DOI: 10.6084/m9.figshare.24865539
title: Data.zip

description: To estimate geometric length measurement imprecision computed from vector data, a model is developed. This model allows to combine the impacts of several causes impacting length measurement.In order to assess the efficiency of the combination methods, an experiment is conducted on a sample of road networks, stored in this dataset.
DOI: 10.6084/m9.figshare.24865539.v1
title: Data.zip

description: To estimate geometric length measurement imprecision computed from vector data, a model is developed. This model allows to combine the impacts of several causes impacting length measurement.In order to assess the efficiency of the combination methods, an experiment is conducted on a sample of road networks, stored in this dataset.