cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4519343
title: Individual Risk.csv

description: These two spreadsheets are used for individual and group risk analysis respectively. In the individual sheet, individual meerkats are listed at different time periods. Each animal has a unique code. Year and Year 2 are different groupings for the time period being investigated. Sex is a binary variable, and Tb-status refers to whether the animals has been identified as a TB case (1) or not (0). Final age is the last age for that animal before it either dies or the end of the study. Age_yrs, life-stg, and Age. cat are all different groupings of age. Natal_Group is the social group that the animal was born in and final group is where it ended up. Ever_dom refers to whether it ever became the dominant animal in a group, and Dominance_duration denotes how many days it remained in this position. In the Group level sheet, different social groups are listed. Group formation date and group end dates are given (when the group ceased to exist. Social group size is given by av_size and gp_size. Year, Yr_period, and year_period are different date groupings. dis_status differentiates between groups that have never had TB observed (0) and those that have (1). ad_sub_m gives the number of group members who are oover one year old, male, and not dominant. ad_sub_m12 is the maximum number of such animals in a group in the past year. Columns Q-U characterise the rainfall in each time period. dom_change, dom_change6, and dom_change 12 refer to whether a dominance change occurred in a given month (1) or not (0), or in the previous 6 or 12 months. Similarly, imm, imm6, and imm12 refer to whether new members joined the group that month (1) or not (0), or in the previous 6 or 12 months.
DOI: 10.6084/m9.figshare.13312421
title: Supplementary Material for: A Novel Noninvasive Method for Quantitative Detection of Colonic Dysmotility Using Real-Time Ultrasonography

description: <b><i>Introduction:</i></b> Colonic motility disorders are a frequent clinical problem caused by various drugs and diseases. However, the etiology of colonic dysmotility is often unclear due to the lack of in vivo methods, including rapid dynamic assessment. <b><i>Objectives:</i></b> The aim of this study was to establish a novel quantitative method to objectively assess colonic motility using ultrasonography. <b><i>Methods:</i></b> We applied echocardiographic speckle tracking-based strain imaging to analyze murine colonic motility. A trace line was placed on the boundary between the proximal wall of the colon and the inner cavity to analyze colonic wall displacement and strain rate. Locomotion activities of the colonic wall were used to quantify colonic motility via ultrasonography. <b><i>Results:</i></b> We found that ultrasonography can quantitatively detect a decrease in colonic motility induced by loperamide, an antidiarrheal drug. These quantitative data were consistent with the imaging findings of colonic peristalsis and colon transit time. Additionally, ultrasonography also revealed changes in colonic motility over short intervals. Furthermore, we have shown that ultrasonography can quantitatively and noninvasively detect colonic dysmotility and hypervascularity of the colonic wall in colitis mice. <b><i>Conclusions:</i></b> These findings suggest that ultrasonography is a useful in vivo method for objectively monitoring changes in colonic motility caused by drugs and diseases.
DOI: 10.6084/m9.figshare.13312421.v1
title: Supplementary Material for: A Novel Noninvasive Method for Quantitative Detection of Colonic Dysmotility Using Real-Time Ultrasonography

description: <b><i>Introduction:</i></b> Colonic motility disorders are a frequent clinical problem caused by various drugs and diseases. However, the etiology of colonic dysmotility is often unclear due to the lack of in vivo methods, including rapid dynamic assessment. <b><i>Objectives:</i></b> The aim of this study was to establish a novel quantitative method to objectively assess colonic motility using ultrasonography. <b><i>Methods:</i></b> We applied echocardiographic speckle tracking-based strain imaging to analyze murine colonic motility. A trace line was placed on the boundary between the proximal wall of the colon and the inner cavity to analyze colonic wall displacement and strain rate. Locomotion activities of the colonic wall were used to quantify colonic motility via ultrasonography. <b><i>Results:</i></b> We found that ultrasonography can quantitatively detect a decrease in colonic motility induced by loperamide, an antidiarrheal drug. These quantitative data were consistent with the imaging findings of colonic peristalsis and colon transit time. Additionally, ultrasonography also revealed changes in colonic motility over short intervals. Furthermore, we have shown that ultrasonography can quantitatively and noninvasively detect colonic dysmotility and hypervascularity of the colonic wall in colitis mice. <b><i>Conclusions:</i></b> These findings suggest that ultrasonography is a useful in vivo method for objectively monitoring changes in colonic motility caused by drugs and diseases.
DOI: 10.6084/m9.figshare.13312397
title: Supplementary Material for: Natural Course of the American Thyroid Association Response to Therapy Statuses (Dynamic Risk Stratification) in Differentiated Thyroid Cancer

description: The concept of response to therapy in differentiated thyroid cancer (DTC) was introduced as a dynamic risk stratification used to assess the status of the disease at the time of the evaluation during the follow-up and the risk of recurrence in the future. Our aim in this study was to evaluate the natural course over time of different response to therapy statuses. <b><i>Methods:</i></b> We studied 501 nonselected DTC patients (102 males and 399 females) with a median age of 37 years (interquartile range [IQR] 29–48). All patients underwent near-total or total thyroidectomy followed by I-131 ablation (initial management). <b><i>Results:</i></b> Of the 501 patients, 387 patients (77.2%) did not have any additional therapuetic interventions after the initial management. In this group, the response to therapy status at the time of the first evaluation after I-131 (median 17 months, IQR 14–22) was an excellent response in 258 (66.7%), an indeterminate response in 101 (26.1%), biochemically incomplete in 17 (4.4%), and structurally incomplete in 11 patients (2.8%). The status changed spontaneously without any intervention in many of them. At the last follow-up visit (median duration 101 months, IQR 71–126), 357 patients (92.2%) achieved an excellent response, 4 (1%) an indeterminate response, 8 (2.1%) a biochemically incomplete status, 16 (4.1%) a structurally incomplete status, and 2 (0.5%) died secondary to DTC with a structurally incomplete status. The response to therapy in the other 114 patients who underwent additional interventions changed from before intervention to the last evaluation as follows: excellent response, 0 to 60 patients (52.6%), indeterminate response, 20 (17.5%) to 1 patient (0.9%), biochemically incomplete 25 (21.9%) to 10 patients (9%), and structurally incomplete 69 (60.5%) to 43 patients (37.7%). Overall, at the last evaluation, 417 (83.2%) were in an excellent response, 5 (1%) in an indeterminate response, 18 (3.6%) in a biochemically incomplete status, 50 (10.2%) in a structurally incomplete status, and 11 (2.2%) died secondary to DTC with a structurally incomplete status. <b><i>Conclusions:</i></b> The response to therapy at the initial evaluation is predictive of the long-term outcome. Most patients with the indeterminate response and some in the biochemically incomplete statuses spontaneously regress to an excellent status. Mortality and progression of DTC occur mostly in the structurally incomplete status.
DOI: 10.6084/m9.figshare.13312397.v1
title: Supplementary Material for: Natural Course of the American Thyroid Association Response to Therapy Statuses (Dynamic Risk Stratification) in Differentiated Thyroid Cancer

description: The concept of response to therapy in differentiated thyroid cancer (DTC) was introduced as a dynamic risk stratification used to assess the status of the disease at the time of the evaluation during the follow-up and the risk of recurrence in the future. Our aim in this study was to evaluate the natural course over time of different response to therapy statuses. <b><i>Methods:</i></b> We studied 501 nonselected DTC patients (102 males and 399 females) with a median age of 37 years (interquartile range [IQR] 29–48). All patients underwent near-total or total thyroidectomy followed by I-131 ablation (initial management). <b><i>Results:</i></b> Of the 501 patients, 387 patients (77.2%) did not have any additional therapuetic interventions after the initial management. In this group, the response to therapy status at the time of the first evaluation after I-131 (median 17 months, IQR 14–22) was an excellent response in 258 (66.7%), an indeterminate response in 101 (26.1%), biochemically incomplete in 17 (4.4%), and structurally incomplete in 11 patients (2.8%). The status changed spontaneously without any intervention in many of them. At the last follow-up visit (median duration 101 months, IQR 71–126), 357 patients (92.2%) achieved an excellent response, 4 (1%) an indeterminate response, 8 (2.1%) a biochemically incomplete status, 16 (4.1%) a structurally incomplete status, and 2 (0.5%) died secondary to DTC with a structurally incomplete status. The response to therapy in the other 114 patients who underwent additional interventions changed from before intervention to the last evaluation as follows: excellent response, 0 to 60 patients (52.6%), indeterminate response, 20 (17.5%) to 1 patient (0.9%), biochemically incomplete 25 (21.9%) to 10 patients (9%), and structurally incomplete 69 (60.5%) to 43 patients (37.7%). Overall, at the last evaluation, 417 (83.2%) were in an excellent response, 5 (1%) in an indeterminate response, 18 (3.6%) in a biochemically incomplete status, 50 (10.2%) in a structurally incomplete status, and 11 (2.2%) died secondary to DTC with a structurally incomplete status. <b><i>Conclusions:</i></b> The response to therapy at the initial evaluation is predictive of the long-term outcome. Most patients with the indeterminate response and some in the biochemically incomplete statuses spontaneously regress to an excellent status. Mortality and progression of DTC occur mostly in the structurally incomplete status.
DOI: 10.23729/56d9854a-d241-40e6-9457-0e2c699b41ee
title: Kylylahti ore preview

description: Rock samples from Kylylahti, drilled close to a contact between ore and waste rock. Sampling was originally done during the Outokumpu mining project. Goal was to investigate the internal structure of the ore. Preview of PAS dataset https://doi.org/10.23729/811365cb-05b1-45f8-8e13-0c7d2000b08a
DOI: 10.25592/uhhfdm.8277
title: 3D Model of a Skullcap

description: 3D Model of a Skullcap Detailed Information: Murder on a young female drug addict in her shower with a carpenter hammer. This 3D scan was made possible within the framework of the Hamburg Open Science programme by funding from the Ministry of Science, Research and Equality of the Free and Hanseatic City of Hamburg.
DOI: 10.25592/uhhfdm.8281
title: 3D Model of a Skullcap and Hammer

description: 3D model of a Skullcap and Hammer Detailed Information: Murder on a young female drug addict in her shower with a carpenter hammer. Please have a look at the datasets given with the names: "3D Model of a Hammer" "3D Model of a Skullcap" This 3D scan was made possible within the framework of the Hamburg Open Science programme by funding from the Ministry of Science, Research and Equality of the Free and Hanseatic City of Hamburg.
DOI: 10.25592/uhhfdm.8276
title: 3D Model of a Skullcap

description: 3D Model of a Skullcap Detailed Information: Murder on a young female drug addict in her shower with a carpenter hammer. This 3D scan was made possible within the framework of the Hamburg Open Science programme by funding from the Ministry of Science, Research and Equality of the Free and Hanseatic City of Hamburg.
DOI: 10.25592/uhhfdm.8280
title: 3D Model of a Skullcap and Hammer

description: 3D model of a Skullcap and Hammer Detailed Information: Murder on a young female drug addict in her shower with a carpenter hammer. Please have a look at the datasets given with the names: "3D Model of a Hammer" "3D Model of a Skullcap" This 3D scan was made possible within the framework of the Hamburg Open Science programme by funding from the Ministry of Science, Research and Equality of the Free and Hanseatic City of Hamburg.
DOI: 10.25592/uhhfdm.1242
title: Hyperolius parallelus ZMH A09562, unstained CT volume

description: Species: <em>Hyperolius parallelus</em> Collection number: ZMH A09562 Institution of origin: Zoologisches Museum Hamburg Data: CT volume of unstained specimen Coverage: full specimen Scanner: Skyscan1172 Scanning paramters: 55 kV; 125 µA; filter: Al 0.5 mm Voxel size: 16.53658 µmDataset used in: Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284 and the Wilhelm-Peters-Fonds of the Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V.
DOI: 10.25592/uhhfdm.1240
title: Hyla arborea ZMH A06468, unstained CT volume

description: Species: <em>Hyla arborea</em> Collection number: ZMH A06468 Institution of origin: Zoologisches Museum Hamburg Data: CT volume of unstained specimen Coverage: full specimen Scanner: Phoenix Nanotom S Scanning paramters: 60 kV; 150 µA; filter: no filter Voxel size: 23.23 µmDataset used in: Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284.
DOI: 10.25592/uhhfdm.1241
title: Hyperolius parallelus ZMH A09562, unstained CT volume

description: Species: <em>Hyperolius parallelus</em> Collection number: ZMH A09562 Institution of origin: Zoologisches Museum Hamburg Data: CT volume of unstained specimen Coverage: full specimen Scanner: Skyscan1172 Scanning paramters: 55 kV; 125 µA; filter: Al 0.5 mm Voxel size: 16.53658 µmDataset used in: Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284 and the Wilhelm-Peters-Fonds of the Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V.
DOI: 10.25592/uhhfdm.1184
title: Bombina variegata ZMH A06234, unstained CT volume

description: Species: <em>Bombina variegata</em> Collection number: ZMH A06234 Institution of origin: Zoologisches Museum Hamburg Data: CT volume of unstained specimen Coverage: full specimen Scanner: Skyscan1172 Scanning paramters: 49 kV; 200 µA; filter: Al 0.5 mm Voxel size: 17.60223 µmDataset used in: Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284 and the Wilhelm-Peters-Fonds of the Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V.
DOI: 10.25592/uhhfdm.1239
title: Hyla arborea ZMH A06468, unstained CT volume

description: Species: <em>Hyla arborea</em> Collection number: ZMH A06468 Institution of origin: Zoologisches Museum Hamburg Data: CT volume of unstained specimen Coverage: full specimen Scanner: Phoenix Nanotom S Scanning paramters: 60 kV; 150 µA; filter: no filter Voxel size: 23.23 µmDataset used in: Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284.
DOI: 10.25592/uhhfdm.1183
title: Bombina variegata ZMH A06234, unstained CT volume

description: Species: <em>Bombina variegata</em> Collection number: ZMH A06234 Institution of origin: Zoologisches Museum Hamburg Data: CT volume of unstained specimen Coverage: full specimen Scanner: Skyscan1172 Scanning paramters: 49 kV; 200 µA; filter: Al 0.5 mm Voxel size: 17.60223 µmDataset used in: Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284 and the Wilhelm-Peters-Fonds of the Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V.
DOI: 10.25592/uhhfdm.1186
title: Breviceps mossambicus ZMB 83246, unstained CT volume

description: Species: <em>Breviceps mossambicus</em> Collection number: ZMB 83246 Institution of origin: Museum für Naturkunde, Berlin Data: CT volume of unstained specimen Coverage: partial specimen, left fingertips cut Scanner: Skyscan1172 Scanning paramters: 55 kV; 181 µA; filter: Al 0.5 mm Voxel size: 16.53658 µmDataset used in: Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284 and the Wilhelm-Peters-Fonds of the Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V.
DOI: 10.25592/uhhfdm.1185
title: Breviceps mossambicus ZMB 83246, unstained CT volume

description: Species: <em>Breviceps mossambicus</em> Collection number: ZMB 83246 Institution of origin: Museum für Naturkunde, Berlin Data: CT volume of unstained specimen Coverage: partial specimen, left fingertips cut Scanner: Skyscan1172 Scanning paramters: 55 kV; 181 µA; filter: Al 0.5 mm Voxel size: 16.53658 µmDataset used in: Engelkes, K., Kath, L., Kleinteich, T., Hammel, J. U., Beerlink, A., Haas, A. (2020) Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations. Ecology and Evolution 10(20): 11467–11487. https://doi.org/10.1002/ece3.6784.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 387723284 and the Wilhelm-Peters-Fonds of the Deutsche Gesellschaft für Herpetologie und Terrarienkunde e.V.
DOI: 10.6084/m9.figshare.13312553
title: Data for seasonality, distribution and sources of organophosphate esters in PM2.5 from an inland urban city in Southwest China

description: Samples were collected from six ground-based sites located inChengdu, a typical rapidly developing metropolitan area inSouthwest China, and were analyzed for seven OPEs inatmospheric PM2.5 (7OPEs).
DOI: 10.15131/shef.data.13060610
title: Data for manuscript: Optical analogue of Dresselhaus spin-orbit interaction in photonic graphene

description: Experimental data for the Nature Photonics Letter "Optical analogue of Dresselhaus spin-orbit interaction in photonic graphene".
DOI: 10.5525/gla.researchdata.1066
title: Laser Microphone through scattering medium
DOI: 10.5281/zenodo.4300169
title: Replication package with data used in the study: The effect of code smells and design patterns on two change-related metrics: An exploratory study

description: This is a replication package with data used in a study by T. Alkhaeir and B. Walter "The effect of code smells and design patterns on two change-related metrics: An exploratory study" This dataset contains the following folders: Aggregated Results Per System For each subject system (AOI, Jedit, JHotDraw), we identify the following datasets: DP, nDP, S, nS ,SDP, nSDP, SnDP, and nSnDP. Each dataset is represented by a separate csv file. Those csv files include raw data about every class in every release, the csv files also include columns which represent: - CHURN (CLPLPR(C)*100): defined as the sum of added and deleted lines in a class in a release, adjusted to the size of the class and to the number of revisions in the release; - and FREQ (MTPR(C)*100): defined as the average number of changes made to a class in a release, adjusted to the number of revisions in the release Detailed Results Per Smell Or Pattern For each specific code smell (S) in each public release (Rel) of all subject systems, we identify SDP and SnDP datasets. Each dataset is in a separate .csv file For each specific design pattern (DP) in each public release (Rel) of all subject systems, we identify SDP and nSDP Plots<br> We also include QQ plots for CHURN, FREQ values for every dataset in every system, that could serve as a supplementary data for the paper.
DOI: 10.5281/zenodo.4300168
title: Replication package with data used in the study: The effect of code smells and design patterns on two change-related metrics: An exploratory study

description: This is a replication package with data used in a study by T. Alkhaeir and B. Walter "The effect of code smells and design patterns on two change-related metrics: An exploratory study" This dataset contains the following folders: Aggregated Results Per System For each subject system (AOI, Jedit, JHotDraw), we identify the following datasets: DP, nDP, S, nS ,SDP, nSDP, SnDP, and nSnDP. Each dataset is represented by a separate csv file. Those csv files include raw data about every class in every release, the csv files also include columns which represent: - CHURN (CLPLPR(C)*100): defined as the sum of added and deleted lines in a class in a release, adjusted to the size of the class and to the number of revisions in the release; - and FREQ (MTPR(C)*100): defined as the average number of changes made to a class in a release, adjusted to the number of revisions in the release Detailed Results Per Smell Or Pattern For each specific code smell (S) in each public release (Rel) of all subject systems, we identify SDP and SnDP datasets. Each dataset is in a separate .csv file For each specific design pattern (DP) in each public release (Rel) of all subject systems, we identify SDP and nSDP Plots<br> We also include QQ plots for CHURN, FREQ values for every dataset in every system, that could serve as a supplementary data for the paper.
DOI: 10.5281/zenodo.4294812
title: Reproductive notes of Phyllostomid bats in Ecuador

description: <strong>Reproductive notes of Phyllostomid bats in Ecuador</strong> (data_reproductive bats_ecuador.xlsx). Es el producto de seis estudios ambientales realizados en cinco provincias y seis localidades del Ecuador continental. Los muestreos se realizaron en los años: 2009, 2011, 2013, 2019 y 2020. Esta base de datos se usó para evaluar el estado reproductivo de individuos hembra de murciélagos filostómidos, previa publicación en <em>Ecotrópicos</em>, Revista de la Sociedad Venezolana de Ecología.