cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7165306
title: Simulated trajectory ensembles for the closed-to-open transition of adenylate kinase from DIMS MD and FRODA

description: The macromolecular conformational transition between the closed conformation of apo-adenylate kinase from E. coli (EcAdK) to the open conformation was sampled with two methods: (1) dynamic importance sampling molecular dynamics (DIMS MD), and (2) Framework Rigidity Optimized Dynamics Algorithm (FRODA). Each ensemble of independently generated paths contains 200 trajectories in the CHARMM DCD format.<br><br>Data are from: Seyler SL, Kumar A, Thorpe MF, Beckstein O (2015) <i>Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways</i>. PLoS Comput Biol 11(10): e1004568. https://doi.org/10.1371/journal.pcbi.1004568 (see there for more details).<br>Each tar file contains a directory <i>trajectories</i> containing the DCD files and a directory <i>topologies</i> with files that include information about the atoms (CHARMM PSF format or PDB format).<br><br><b>DIMS.tar.gz</b>: DIMS AdK (implicit solvent) with dynamic importance sampling MD from closed (1AKE) to open (4AKE). CHARMM 22 force field.<code> Topology file: adk4ake.psf <br></code><code><br></code> <b>FRODA.tar.gz</b>: FRODA AdK with geometric targeting on a rigid decomposition (FRODA server); closed (1AKE) to open (4AKE)<code>. Topology file: 1ake.pdb<br></code><code><br></code>
DOI: 10.7284/103818
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS0901 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103819
title: Gyrocompass data collected during research cruise WS0901 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7165306.v1
title: Simulated trajectory ensembles for the closed-to-open transition of adenylate kinase from DIMS MD and FRODA

description: The macromolecular conformational transition between the closed conformation of apo-adenylate kinase from E. coli (EcAdK) to the open conformation was sampled with two methods: (1) dynamic importance sampling molecular dynamics (DIMS MD), and (2) Framework Rigidity Optimized Dynamics Algorithm (FRODA). Each ensemble of independently generated paths contains 200 trajectories in the CHARMM DCD format.<br><br>Data are from: Seyler SL, Kumar A, Thorpe MF, Beckstein O (2015) <i>Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways</i>. PLoS Comput Biol 11(10): e1004568. https://doi.org/10.1371/journal.pcbi.1004568 (see there for more details).<br>Each tar file contains a directory <i>trajectories</i> containing the DCD files and a directory <i>topologies</i> with files that include information about the atoms (CHARMM PSF format or PDB format).<br><br><b>DIMS.tar.gz</b>: DIMS AdK (implicit solvent) with dynamic importance sampling MD from closed (1AKE) to open (4AKE). CHARMM 22 force field.<code> Topology file: adk4ake.psf <br></code><code><br></code> <b>FRODA.tar.gz</b>: FRODA AdK with geometric targeting on a rigid decomposition (FRODA server); closed (1AKE) to open (4AKE)<code>. Topology file: 1ake.pdb<br></code><code><br></code>
DOI: 10.17045/sthlmuni.7165300
title: Open data: Auditory Awareness Negativity is an Electrophysiological Correlate of Awareness in an Auditory Threshold Task

description: Open data for "Auditory Awareness Negativity is an Electrophysiological Correlate of Awareness in an Auditory Threshold Task" by Rasmus Eklund and Stefan Wiens<br>AAN_data.zip contains the raw eeg data files (*.bdf) that were recorded with a biosemi system (www.biosemi.com). The files can be opened in matlab with the fieldtrip toolbox. http://www.fieldtriptoolbox.org/. The txt files in each subject's directory are the behavioral logfiles from the main task (see python.zip). Amps_AAN_exp1.csv and Amps_AAN_exp2.csv contain the mean ERP data that are generated by the fieldtrip scripts (see the scripts for an explanation of the variables).<br>bayesfactor.zip contains the bayes factor analyses of the main data. some files were generated with Aladins r scripts (https://doi.org/10.17045/sthlmuni.4981154). the r-files can be run with r (https://www.r-project.org/). <br>fieldtrip.zip contains all the matlab scripts that were used to process the erp data with the toolbox fieldtrip. http://www.fieldtriptoolbox.org/The zip also contains the final, preprocessed individual data files. They can be opened with matlab.<br>preregistration.zip contains the protocols that we preregistered at open science framework (OSF).<br>python.zip contains python script for the main task. It needs python (https://www.python.org/) and psychopy (http://www.psychopy.org/).<br>R.zip contains the r scipts to process the behavioral data and make the tables. The r-files can be run with r (https://www.r-project.org/).
DOI: 10.7284/103813
title: INS (Inertial Navigation System) data collected during research cruise WS0901 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103820
title: Radiometer data collected during research cruise WS0901 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7165118
title: Postural Sway Abnormalities in Schizotypal Personality Disorder - data and analyses

description: This represents all the raw data from our paper published in "Schizophrenia Bulletin", MATLAB code for analysing it, R code for generating the statistics and figures, and a complete manuscript written in RMarkdown which should replicate the published results in the paper using the raw datasheets provided. There are also full supplementary analyses in free statistics programs JASP and JAMOVI.
DOI: 10.7284/103821
title: Radiometer data collected during research cruise WS0901 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103826
title: Radiometer data collected during research cruise WS0901 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103825
title: Rain Gauge data collected during research cruise WS0901 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103822
title: Water Temperature data collected during research cruise WS0901 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103823
title: TSG (Thermosalinograph) data collected during research cruise WS0901 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7165019
title: MOESM7 of In silico characterization of the global Geobacillus and Parageobacillus secretome

description: Additional file 7: Table S3. Blast results for proteins with homology to biotechnologically relevant enzymes. Description of data: Table showing the blast results for the most significant hits between protein sequences from the global secretome and enzymes from the Uniprot database that have been previously highlighted as being of biotechnological relevance. The scores and e-values, as well as the accession numbers were obtained using the Blast function against the UniprotDB.
DOI: 10.6084/m9.figshare.7165019.v1
title: MOESM7 of In silico characterization of the global Geobacillus and Parageobacillus secretome

description: Additional file 7: Table S3. Blast results for proteins with homology to biotechnologically relevant enzymes. Description of data: Table showing the blast results for the most significant hits between protein sequences from the global secretome and enzymes from the Uniprot database that have been previously highlighted as being of biotechnological relevance. The scores and e-values, as well as the accession numbers were obtained using the Blast function against the UniprotDB.
DOI: 10.7284/103824
title: Winch data collected during research cruise WS0901 using a General Oceanics DT1020 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103829
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS0902 using a RDI BB-600 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103830
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS0902 using a RDI OS-75 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103831
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS0902 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103832
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS0902 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103833
title: Gyrocompass data collected during research cruise WS0902 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103827
title: INS (Inertial Navigation System) data collected during research cruise WS0902 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103834
title: Radiometer data collected during research cruise WS0902 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103835
title: Radiometer data collected during research cruise WS0902 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7164974
title: MOESM2 of In silico characterization of the global Geobacillus and Parageobacillus secretome

description: Additional file 2: Table S2. Presence/absence matrix of the global secretome of Geobacillus and Parageobacillus. Table showing the presence or absence of the 772 protein sequences constituting the global secretome (annotated in the first row) across the 64 genomes used in this study (annotated in the first column). Presence/absence is indicated using a binary code of 1 and 0 to represent presence and absence, respectively.
DOI: 10.6084/m9.figshare.7164974.v1
title: MOESM2 of In silico characterization of the global Geobacillus and Parageobacillus secretome

description: Additional file 2: Table S2. Presence/absence matrix of the global secretome of Geobacillus and Parageobacillus. Table showing the presence or absence of the 772 protein sequences constituting the global secretome (annotated in the first row) across the 64 genomes used in this study (annotated in the first column). Presence/absence is indicated using a binary code of 1 and 0 to represent presence and absence, respectively.
DOI: 10.6084/m9.figshare.7164968
title: MOESM1 of In silico characterization of the global Geobacillus and Parageobacillus secretome

description: Additional file 1: Table S1. Similarity matrix. Table showing the percentage of orthology between the secretomes of the 64 genomes used in this study. This similarity matrix was used to generate the orthology dendogram in Fig.Â 6.
DOI: 10.6084/m9.figshare.7164968.v1
title: MOESM1 of In silico characterization of the global Geobacillus and Parageobacillus secretome

description: Additional file 1: Table S1. Similarity matrix. Table showing the percentage of orthology between the secretomes of the 64 genomes used in this study. This similarity matrix was used to generate the orthology dendogram in Fig.Â 6.
DOI: 10.7284/103840
title: Radiometer data collected during research cruise WS0902 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103839
title: Rain Gauge data collected during research cruise WS0902 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103836
title: Water Temperature data collected during research cruise WS0902 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103837
title: TSG (Thermosalinograph) data collected during research cruise WS0902 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103838
title: Winch data collected during research cruise WS0902 using a General Oceanics DT1020 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103843
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS0903 using a RDI BB-600 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103844
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS0903 using a RDI OS-75 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7164929
title: Additional file 5: of Estimation of pack density in grey wolf (Canis lupus) by applying spatially explicit capture-recapture models to camera trap data supported by genetic monitoring

description: Datasets and R scripts used for SPACECAP and secr models. Datasets include capture histories, trap histories and state-space. (RAR 45 kb)
DOI: 10.6084/m9.figshare.7164929.v1
title: Additional file 5: of Estimation of pack density in grey wolf (Canis lupus) by applying spatially explicit capture-recapture models to camera trap data supported by genetic monitoring

description: Datasets and R scripts used for SPACECAP and secr models. Datasets include capture histories, trap histories and state-space. (RAR 45 kb)
DOI: 10.7284/103842
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise WS0903 using a Sea-Bird SBE-911+ instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103845
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS0903 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103846
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS0903 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7164911
title: Additional file 9: of PRC2 targeting is a therapeutic strategy for EZ score defined high-risk multiple myeloma patients and overcome resistance to IMiDs

description: Table S5. H3K27me3-associated and EPZ-6438-regulated genes (XLSX 12 kb)
DOI: 10.7284/103847
title: Gyrocompass data collected during research cruise WS0903 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7164911.v1
title: Additional file 9: of PRC2 targeting is a therapeutic strategy for EZ score defined high-risk multiple myeloma patients and overcome resistance to IMiDs

description: Table S5. H3K27me3-associated and EPZ-6438-regulated genes (XLSX 12 kb)
DOI: 10.7284/103841
title: INS (Inertial Navigation System) data collected during research cruise WS0903 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103848
title: Radiometer data collected during research cruise WS0903 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7164893
title: Additional file 1: of Estimation of pack density in grey wolf (Canis lupus) by applying spatially explicit capture-recapture models to camera trap data supported by genetic monitoring

description: Individuals identified in the study area during the two sessions of camera trapping in 2014 and 2015. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.7164890
title: Additional file 8: of PRC2 targeting is a therapeutic strategy for EZ score defined high-risk multiple myeloma patients and overcome resistance to IMiDs

description: Table S8. Lenalidomide+EPZ-6438-regulated genes associated with GSEA signatures (XLSX 75Â kb)
DOI: 10.6084/m9.figshare.7164893.v1
title: Additional file 1: of Estimation of pack density in grey wolf (Canis lupus) by applying spatially explicit capture-recapture models to camera trap data supported by genetic monitoring

description: Individuals identified in the study area during the two sessions of camera trapping in 2014 and 2015. (XLSX 66 kb)
DOI: 10.7284/103849
title: Radiometer data collected during research cruise WS0903 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7164890.v1
title: Additional file 8: of PRC2 targeting is a therapeutic strategy for EZ score defined high-risk multiple myeloma patients and overcome resistance to IMiDs

description: Table S8. Lenalidomide+EPZ-6438-regulated genes associated with GSEA signatures (XLSX 75Â kb)
DOI: 10.7284/103853
title: Radiometer data collected during research cruise WS0903 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7164878
title: Additional file 7: of PRC2 targeting is a therapeutic strategy for EZ score defined high-risk multiple myeloma patients and overcome resistance to IMiDs

description: Table S7. 31 EPZ-6438 + combo upregulated genes (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7164878.v1
title: Additional file 7: of PRC2 targeting is a therapeutic strategy for EZ score defined high-risk multiple myeloma patients and overcome resistance to IMiDs

description: Table S7. 31 EPZ-6438 + combo upregulated genes (XLSX 11 kb)
DOI: 10.7284/103850
title: Water Temperature data collected during research cruise WS0903 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103851
title: TSG (Thermosalinograph) data collected during research cruise WS0903 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7164863
title: Additional file 6: of PRC2 targeting is a therapeutic strategy for EZ score defined high-risk multiple myeloma patients and overcome resistance to IMiDs

description: Table S6. 67 Lenalidomide + combo upregulated genes (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7164866
title: MOESM3 of Metagenome sequencing to analyze the impacts of thiamine supplementation on ruminal fungi in dairy cows fed high-concentrate diets

description: Additional file 3. Taxonomy results of ruminal fungi.
DOI: 10.7284/103852
title: Winch data collected during research cruise WS0903 using a General Oceanics DT1020 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7164866.v1
title: MOESM3 of Metagenome sequencing to analyze the impacts of thiamine supplementation on ruminal fungi in dairy cows fed high-concentrate diets

description: Additional file 3. Taxonomy results of ruminal fungi.
DOI: 10.6084/m9.figshare.7164863.v1
title: Additional file 6: of PRC2 targeting is a therapeutic strategy for EZ score defined high-risk multiple myeloma patients and overcome resistance to IMiDs

description: Table S6. 67 Lenalidomide + combo upregulated genes (XLSX 17 kb)
DOI: 10.7284/103856
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS0904 using a RDI BB-600 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103857
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS0904 using a RDI OS-75 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7164851
title: MOESM2 of Metagenome sequencing to analyze the impacts of thiamine supplementation on ruminal fungi in dairy cows fed high-concentrate diets

description: Additional file 2. Raw data of DMI and milk production.
DOI: 10.7284/103858
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS0904 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7164845
title: Additional file 5: of PRC2 targeting is a therapeutic strategy for EZ score defined high-risk multiple myeloma patients and overcome resistance to IMiDs

description: Table S4. EZH2i target genes are mostly bivalent in XG7 HMCLs (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.7164851.v1
title: MOESM2 of Metagenome sequencing to analyze the impacts of thiamine supplementation on ruminal fungi in dairy cows fed high-concentrate diets

description: Additional file 2. Raw data of DMI and milk production.
DOI: 10.6084/m9.figshare.7164845.v1
title: Additional file 5: of PRC2 targeting is a therapeutic strategy for EZ score defined high-risk multiple myeloma patients and overcome resistance to IMiDs

description: Table S4. EZH2i target genes are mostly bivalent in XG7 HMCLs (XLSX 10Â kb)
DOI: 10.7284/103859
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS0904 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103860
title: Gyrocompass data collected during research cruise WS0904 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103854
title: INS (Inertial Navigation System) data collected during research cruise WS0904 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition