cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25007102.v1
title: Thermal biology of bee pollinators from montane Mediterranean habitats

description: A study was undertaken to assess the diversity in thermal biology of the bee assemblage that pollinates plants in a Mediterranean montane area of southeastern Spain, evaluate its taxonomic and phylogenetic underpinnings, and elucidate whether there existed seasonal, daily, between-habitat or floral visitation correlates of bee thermal biology which could contribute to partition ecological gradients among plant and bee species. Thermal biology parameters were obtained in the laboratory and the field on individual bees of a diverse sample comprising most bee pollinators of the regional plant community. Species-specific thermal biology parameters were combined with quantitative field data on bee pollinators and flower visitation for the regional community of entomophilous plants (Herrera 2023).This data repository consist of 5 data files and 1 code script:<i>bee.ML.supertree.nwk</i><br>Text file with the phylogenetic supertree of world bees in Newick format (Henríquez-Piskulich et al. 2024)<i>raw.K.data.csv</i><br>Delimited text file with thermal constant (<i>K</i>) estimates in the laboratory for <i>N</i> = 645 individual bees. Self-explanatory variable names are in the first row.<i>raw.T.data.csv</i><br>Delimited file with field measurements of thoracic (ti) and air (tair) temperature of <i>N</i> = 1936 individual bees. Self-explanatory variable names are in the first row.<i>species.means.T</i><br>Delimited text file with species means for thoracic temperature (mean.ti), thermal excess (mean.texc) and body mass (mean.peso) for 95 bee species.<i>Pollinator.census.thermal.data.Rda</i><br>Binary file in R format with bee thermal and census data. <i>R.script.for.analyses</i><br>R script for running analysesReferencesHenríquez-Piskulich, P., A. F. Hugall, and D. Stuart-Fox. 2024. A supermatrix phylogeny of the world’s bees (Hymenoptera: Anthophila). Molecular Phylogenetics and Evolution 190:107963.Herrera, C. M. (2023) Thermal biology of bee pollinators: diversity and community-level correlates. <i>bioRxiv</i> Preprint. doi:10.1101/2023.11.27.568883
DOI: 10.6084/m9.figshare.25853437.v2
title: Data from: Scaling-up to understand disease risk: distinct roles of host functional traits in shaping infection risk of avian malaria across different scales

description: Understanding the impacts of diversity on pathogen transmission is greatly essential for public health and biological conservation. However, how the outcome and mechanisms of this diversity-disease relationship vary across biological scales in natural systems remains elusive. In addition, although the role of host functional traits has long been established in disease ecology, its integration into the diversity-disease relationship largely falls behind. By examining avian haemosporidians of 1101 birds from 86 species, we investigated how host functional traits and diversity may shape infection risk across individual- and community-level. We found that host traits affect individual-level infection risk but fail to scale-up the effect to the community-level when testing community-weighted means. Moreover, functional divergence reduced community-level infection risk, indicating the dilution effect of functional diversity. Host richness also showed dilution effect at the community-, but not individual-level for one parasite genus, suggesting that the dilution mechanism results from the aggregation of non-competent hosts into richer communities. These results demonstrate that the outcome and mechanism of diversity-disease relationship depend on biological scale and aggregating observations may cause biased evidence and misattributed mechanisms. Overall, our work motivates the integration of trait-based ecology to further understand the diversity-disease relationship across biological scales.
DOI: 10.6084/m9.figshare.16788313.v1
title: Supplementary Material for: C5orf66 rs4976270/rs639933 Are Associated with Colorectal Cancer Risk in Southern Chinese Han Population: A Case-Control Study

description: <b><i>Background:</i></b> Colorectal cancer (CRC) is one of the common malignant tumors, with high mortality and poor prognosis. Our study aimed to determine the association between the long noncoding RNA (LncRNA) <i>C5orf66</i> polymorphism and CRC risk in southern Chinese Han population. <b><i>Method:</i></b> Using the experimental design of “case-control” study (512 cases and 513 controls), we selected 4 candidate single-nucleotide polymorphisms (SNPs) of <i>C5orf66</i>. All candidate SNPs were genotyped by Agena MassARRAY. Logistic regression was used to analyze the association between SNPs and CRC risk. Then, we used false-positive report probability analysis to detect whether the significant result is just a chance or noteworthy observation. Multi-factor dimensionality reduction was used to analyze the interaction of “SNP-SNP” in CRC risk. <b><i>Results:</i></b> Our results showed that <i>C5orf66</i> SNPs rs4976270 (odds ratio [OR] = 1.69, <i>p</i> = 0.021) and rs639933 (OR = 1.67, <i>p</i> = 0.024) were, respectively, associated with increasing CRC risk in the southern Chinese Han population. Stratified analysis showed that rs4976270 and rs639933 were significantly associated with an increased risk of CRC in subgroups (&gt;60 years, body mass index ≤24 and drinking) under multiple genetic models. In addition, rs254563 and rs647161 also had potential association with CRC risk in subgroups (BMI ≤24 and drinking). Finally, haplotype analysis results showed that haplotype “TA” was significantly associated with increased CRC risk (OR = 1.21, confidence interval = 1.47–2.02, <i>p</i> = 0.043). <b><i>Conclusion:</i></b> Our study provides a new idea for the risk assessment of CRC. LncRNA C5orf66 SNPs have a certain association with CRC risk in the southern Chinese Han population.
DOI: 10.15468/dl.xytn6w
title: Occurrence Download

description: A dataset containing 5252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Crocallis elinguaria (Linnaeus, 1758)"
 ]
}

 The dataset includes 5252 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009498-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.9710666.v1
title: Table 2. Reactome pathway analysis of down-regulated proteins.

description: <b>Reactome pathway analysis of down-regulated proteins.</b> Reactome Knowledgebase version 68
DOI: 10.7294/20457189.v1
title: Surface Pressure Spectra Beneath High Reynolds Number Smooth and Rough Wall Boundary Layers in Pressure Gradients

description: This dataset contains surface pressure autospectral densities, mean velocity profiles, and mean boundary layer parameters for a systematic family of high Reynolds number (11,000 &lt; Re_theta &lt; 83,000) low Mach number (0.08 &lt; M &lt; 0.20) turbulent boundary layer flows over smooth and very rough (300 &lt; k+ &lt; 900) surfaces in adverse and favorable continually varying mild pressure gradients (-0.8 &lt; beta &lt; 0.8). There are two Reynolds number and twelve pressure gradient cases (twenty-four total) for each surface treatment and seven measurement locations within each flow case, for a total of 336 unique flow conditions. For each condition, there is an auto spectral density of fluctuating pressure G_pp (Pa2/Hz) vs. f (Hz), mean velocity profiles dimensional (u vs. y) and viscous-normalized (u+ vs. y+), and an array of relevant scalar parameters, including local density and viscosity, boundary layer thicknesses, skin friction coefficient, and other parameters from the literature. These cases are generated by studying the boundary layer on the side-wall of a wind tunnel test-section while a NACA0012 airfoil is present in the test-section center. The presence of the airfoil displaces pressure gradient distributions on the wall as a function of model angle of attack. This dataset is associated with two resource DOI’s: 10.2514/1.J061431, 10.1007/s00348-022-03476-9 . The resource title “Fluctuating Pressure Beneath Smooth Wall Boundary Layers in Non-Equilibrium Pressure Gradients” associated with the resource DOI 10.2514/1.J061431 is already published. The resource title “Turbulence and pressure fluctuations in rough wall boundary layers in pressure gradients” associated with the resource DOI 10.1007/s00348-022-03476-9 is accepted and should be published soon.
DOI: 10.6084/m9.figshare.19944984.v1
title: Placental magnetic resonance imaging: normal appearance, anatomical variations, and pathological findings

description: Abstract Placental magnetic resonance imaging (MRI) has been increasingly requested, especially for the evaluation of suspected cases of placental adhesive disorders, generally known as placenta accreta. Abdominal radiologists need to become familiar with normal placental anatomy, anatomical variations, the current terminology, and major placental diseases that, although rare, are important causes of maternal and fetal morbidity and mortality. The aim of this didactic pictorial essay is to illustrate various findings on placental MRI, as well as to emphasize the importance of communication between radiologists and obstetricians in the search for best practices in the management of the affected patients.
DOI: 10.6084/m9.figshare.26828377.v1
title: S4 Table

description: <b>S4 Table. Summary of the estimated contributions from four (combined) source groups overall and among individual house mice from EAA </b><b><i>δ</i></b><sup><strong>13</strong></sup><b>C values</b>. Source contributions are reported (in %) as mean values, standard deviation, and at various quantiles.
DOI: 10.6084/m9.figshare.10003406.v2
title: Foot-core training for preventing running-related injuries: a survival analysis of a single-blind randomized controlled trial

description: Real dataset of assessed at baseline and randomly allocated to either an intervention (n=56) or control (n=62)group. The intervention group received an 8-week course of training focused on the foot-ankle muscles. Thetraining protocol included 12 exercises performed 3 times a week. Assessments consisted of three separatebiomechanical evaluations of foot strength and foot posture, and a weekly report on each participant’s runningdistance, pace, and injury incidence over 12 months.
DOI: 10.6084/m9.figshare.24715311.v1
title: A self-powered intracardiac pacemaker in swine model

description: A self-powered intracardiac pacemaker in swine model
DOI: 10.6084/m9.figshare.3512018.v1
title: Supplement 1. Two files for fitting binomial mixture models as described originally by Royle (2004).

description: File List Supplement 1, original Nmixture.R -- R source code. Nmixture_tutorial.txt -- A step by step description of how to use the R code in file "Nmixture.R". Supplement 1, Revision 1 Nmixture.R -- R source code, corrected. Description This supplement provides the file "Nmixture.R" which can be sourced into R. It contains example data for one species and code to fit Poisson and Negative Binomiol mixture models as described in Royle (2004) and in this article.
DOI: 10.6084/m9.figshare.15911949.v1
title: BaseBankData

description: Data for this study was acquired through the Regulatory In-Lieu Fee and Banking Information Tracking System (RIBITS), extracting information on 1653 banks for the United States (as of June 2020).
DOI: 10.6084/m9.figshare.28887488.v1
title: Amanah dalam Islam dan Implementasinya pada Praktik Pelayanan Kesehatan Modern

description: Abstract This study aims to describe the concept of amanah in Islam and analyze its implementation in modern health care practices. Amanah, as a fundamental value in Islamic teachings, includes responsibility towards Allah SWT, fellow human beings, and towards professional duties. This study uses a qualitative approach through library research methods, by reviewing primary sources such as the Qur'an, hadith, and scientific literature related to Islamic ethics and health care. The analysis was conducted descriptively-analytical to describe the meaning of amanah and its application in the current medical context. The results of the study indicate that the application of the amanah value in modern health care includes maintaining patient confidentiality, honesty in medical communication, work professionalism, and continuous competency renewal. The implementation of amanah has been proven to improve the quality of health services, strengthen the relationship of trust between health workers and patients, and foster an ethical work culture. In conclusion, amanah is not only a moral and spiritual demand, but also an important foundation in building quality, fair, and public health services. Strengthening character education based on Islamic values and fostering an ethical work system are the main recommendations for strengthening the amanah value in the world of health. Keywords: Trust, Islam, Health Services, Professionalism, Medical Ethics
DOI: 10.6084/m9.figshare.24192573.v2
title: minimal data set

description: The global cold chain logistics market is witnessing a significant upswing, driven by the rising demand for perishable food products and increasing shipment volumes worldwide. Technological advancements are leading to a more intelligent and digitally enabled cold chain logistics system. However, the high loss rate of fresh agricultural products in China poses a significant threat to the country's food security. Therefore, it is imperative to explore innovative solutions, such as blockchain, to address the challenges of traditional cold chain logistics. In this paper, inspired by the prospect theory and evolutionary game theory, we propose an evolutionary game model to analyze the behavioral strategies of the tripartite of n-level cold chain participants, consumers, and government. Using MATLAB software, the numerical simulation of the game path of this tripartite theory is conducted, and the influence of variable parameters on the evolutionary process and outcomes of the system is analyzed. The results the following: (1) The development of an effective cold chain supply chain system can be divided into three stages, and blockchain technology plays a pivotal role in creating a seamless cold chain environment. The cost of blockchain adoption, government rewards, as well as penalties can significantly influence the behavioral choices of the three stakeholders. (2) The behavior of individual cold chain participants has a strong negative externality, which can impact the behavior of others. We also find that the larger the scale of the cold chain, the lower the probability of default by the participants. (3) The government's adoption of blockchain technology and the implementation of effective incentive policies can foster the successful development of the cold chain blockchain infrastructure. Our research contributes to the theoretical understanding of cold chain logistics decision making and policy creation for the tripartite stakeholders, including cold chain participants, consumers, and government. Our findings can serve as a valuable reference for scientific decision making and policy formulation to encourage the development of a robust cold chain supply chain system.
DOI: 10.5285/61ab53f8-5eaa-447b-a35a-bd1ae10c3973
title: Subglacial overdeepenings in selected valley glaciers in Central Himalayas, New Zealand Southern Alps, European Alps, Peruvian Andes and Alaska, 2006-2018

description: The dataset contains depth information (in meters) for pixels of subglacial overdeepenings with an area of 10000 m2 or larger, across five regions: Alaska, European Alps, New Zealand Southern Alps, the Central Himalayas, and the Peruvian Andes. These overdeepenings were derived by subtracting ice thickness data from Digital Elevation Models (DEMs) that describe the surface topography. Five ice thickness models were used for all regions: Farinotti's Ensemble, GlabTop2, Huss and Farinotti were downloaded from Farinotti et al., (2019). OGGM's ice thickness was downloaded from Farinotti et al., 2019 for all regions except for the Himalayas where it was generated by keeping the default same. Millan's ice thickness was downloaded from Millan et al., (2022). The primary DEM used was the ALOS PALSAR DEM. For Central Himalayas, in addition to ALOS PALSAR, three other DEMs were used: ASTER, SRTM, and Copernicus.

NERC standard grant NE/S013318/1.
description: ArcGIS Pro version 3.10 was used for data handling and processing. Ice thicknesses, in raster format, were subtracted from the DEM using the raster calculator in ArcGIS to derive glacier bed topography. This bed topography was filled using the ArcGIS fill tool. The original bed topography was then subtracted from the filled bed topography using ArcGIS raster calculator to estimate overdeepening locations, areas and depths.
description: Data were processed using ArcGIS pro version 3.10.
description: Some overdeepenings that are smaller than the pixel size might not have been estimated. Spatial resolution is 50 m x 50 m.
DOI: 10.6084/m9.figshare.12248594.v1
title: Supplementary Material for: Variability of Thyroid Measurements from Ultrasound and Laboratory in a Repeated Measurements Study

description: <b><i>Background:</i></b> Variability of measurements in medical research can be due to different sources. Quantification of measurement errors facilitates probabilistic sensitivity analyses in future research to minimize potential bias in epidemiological studies. We aimed to investigate the variation of thyroid-related outcomes derived from ultrasound (US) and laboratory analyses in a repeated measurements study. <b><i>Subjects and Methods:</i></b> Twenty-five volunteers (13 females, 12 males) aged 22–70 years were examined once a month over 1 year. US measurements included thyroid volume, goiter, and thyroid nodules. Laboratory measurements included urinary iodine concentrations and serum levels of thyroid-stimulating hormone (TSH), free triiodothyronine (fT3), free thyroxine (fT4), and thyroglobulin. Variations in continuous thyroid markers were assessed as coefficient of variation (CV) defined as mean of the individual CVs with bootstrapped confidence intervals and as intraclass correlation coefficients (ICCs). Variations in dichotomous thyroid markers were assessed by Cohen’s kappa. <b><i>Results:</i></b> CV was highest for urinary iodine concentrations (56.9%), followed by TSH (27.2%), thyroglobulin (18.2%), thyroid volume (10.5%), fT3 (8.1%), and fT4 (6.3%). The ICC was lowest for urinary iodine concentrations (0.42), followed by fT3 (0.55), TSH (0.64), fT4 (0.72), thyroid volume (0.87), and thyroglobulin (0.90). Cohen’s kappa values for the presence of goiter or thyroid nodules were 0.64 and 0.70, respectively. <b><i>Conclusion:</i></b> Our study provides measures of variation for thyroid outcomes, which can be used for probabilistic sensitivity analyses of epidemiological data. The low intraindividual variation of serum thyroglobulin in comparison to urinary iodine concentrations emphasizes the potential of thyroglobulin as marker for the iodine status of populations.
DOI: 10.6084/m9.figshare.6833531.v1
title: Replication of a historical survey of bumblebee assemblages in subalpine areas in Norway

description: A comprehensive inventory of Scandinavian bumblebees carried out between 1957 and 1961 (Løken 1973) served as a basis for historical data of bumblebee communities. We selected 18 of these sites to be re-surveyed in 2012. We selected sites so that they covered a large latitudinal and longitudinal gradient (Lat.: 60.42°–62.62°, ca. 240 km; long.: 7.24°–10.61°, ca. 180 km), and to form 9 pairs of sites where each pair consisted of one site at a high altitude – approximately 1000 m.a.s.l. (min. = 730 m, max. = 1000 m) and one site at a low altitude – approximately 500 m.a.s.l. (min. = 440 m, max. = 765 m) in each pair. The maximum distance between two sites in a pair was 44.4 km, and the minimum distance was 2.6 km (median = 12.3 km). The high-altitude sites were located within the upper part of the subalpine forest zone, close to the forest line which is around 1000 m.a.s.l. in this region. A further criterion for selection was the presence of the plant <i>Aconitum septentrionale</i>, which was the subject of a parallel study and occurs mainly in nutrient-rich, wet meadows and sub-alpine forests with high soil pH. However, since we surveyed bumblebees within a large area with a 1 km radius, this specific criterion is unlikely to have any larger impact on the bumblebee species composition. We identified the locations and checked the suitability of sites to be re-surveyed in the field in July 2011. <br>In some cases, it was difficult to identify the exact location of the site for the historical records, which typically consisted of the name of a farm or village, rather than any exact coordinates. The identification of sites was however facilitated by the fact that the altitude was often stated. To account for this uncertainty, we took a conservative approach, and surveyed bumblebees in multiple flower-rich habitats within a circular area with a radius of 1 km around the most likely location for the historical records. This means that we are more likely to over-estimate than under-estimate current bumblebee species richness. Prior to the field visits, potentially flower-rich habitats were identified from aerial photos and by traveling along roads within the 1 km circle by car. In the field, two experienced bumblebee experts visited as many different flower-rich habitats within the 1 km circle as possible during 2 hours and recorded the abundance of all bumblebee species encountered. Most species could be identified in the field, but in a few cases bumblebee specimens were collected and identified later in the laboratory. Each site was visited twice between July 6 and July 27 2012. To allow comparison with historical data, we discarded abundances in further analyses and used species occurrences only.<br><br>Reference cited:Løken, A., 1973. Studies on Scandinavian bumble bees (Hymentoptera, Apidae). Norsk Entomologisk Tidsskrift 20, 1-218.<br>
DOI: 10.6084/m9.figshare.16831858.v1
title: The impact of vitamin D supplementation on peripheral neuropathy in a sample of Egyptian prediabetic individuals

description: · Data file 1: prediabetic patients without peripheral neuropathy and their descriptive and laboratory data. · Data file 2: prediabetic with peripheral neuropathy and their descriptive, laboratory data, McGill Pain Questionnaire, clinical examination for neuropathy before vitamin D supplementation.<i></i> · Data file 3: prediabetic with peripheral neuropathy and their descriptive and laboratory data, McGill Pain Questionnaire, clinical examination for neuropathy after Vitamin D supplementation. <i></i>