cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28271366
title: Metabolomics for ALDH4A1.xlsx

description: The targeted LC/MS metabolic profiling of control, ALDH4A1 knockdown, ALDH4A1 knockdown with restoration of WT ALDH4A1 (4A1<sup>WT</sup>) or S352L mutant (4A1<sup>S352L</sup>) Hep3B cells.
DOI: 10.34943/3191d1f4-d39a-4c5f-9905-4a9d765b4d74
title: ODP 1364A Circulation Obviation Retrofit Kit Deployed 2010-09-17

description: The CORK P (1364A) was deployed on 2010-09-17 at ODP 1364A. ODP 1364A is a location at Clayoquot Slope. This device is a Circulation Obviation Retrofit Kit. Circulation Obviation Retrofit Kit (CORK) instruments seal the top of boreholes, to prevent circulation between the open hole and the ocean bottom water. CORKs monitor subseafloor hydrology by collecting in-situ pressure and temperature measurements from the formation deep below the seafloor. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/bb9531b6-49c9-4cba-afdb-6dbf0a4326f5
title: ODP 1364A Circulation Obviation Retrofit Kit Deployed 2010-09-17

description: The CORK P (1364A) was deployed on 2010-09-17 at ODP 1364A. ODP 1364A is a location at Clayoquot Slope. This device is a Circulation Obviation Retrofit Kit. Circulation Obviation Retrofit Kit (CORK) instruments seal the top of boreholes, to prevent circulation between the open hole and the ocean bottom water. CORKs monitor subseafloor hydrology by collecting in-situ pressure and temperature measurements from the formation deep below the seafloor. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.14713817
title: Input and Test Data for Galaxy tutorial "Batch Correction and Integration" - Seurat version

description: This data is used for the Seurat version of the batch correction and integration tutorial on the Galaxy Training Network.

The input data was provided by Seurat in the 'Integrative Analysis in Seurat v5' tutorial. The input dataset provided here has been filtered to include only cells for which nFeature_RNA > 1000. The other datasets were produced on Galaxy.

The original dataset was published as: Ding, J., Adiconis, X., Simmons, S.K. et al. Systematic comparison of single-cell and single-nucleus RNA-sequencing methods. Nat Biotechnol 38, 737–746 (2020). https://doi.org/10.1038/s41587-020-0465-8.
DOI: 10.15468/dl.twnnks
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is Tabasco",
 "TaxonKey is Tapirus bairdii (Gill, 1865)"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001122-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghk3bt
title: Occurrence Download

description: A dataset containing 90590 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spodoptera Guenée, 1852"
 ]
}

 The dataset includes 90590 records from 454 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001121-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9l6cpis
title: Gage Height, Turbidity, and Acoustic Backscatter Data Collected During Experimental Sediment Release from Willwood Dam on the Shoshone River in Park County, Wyoming, April 11-13, 2023

description: The Willwood Working Group Two of Wyoming conducted an experimental sediment release from Willwood Dam from April 11-13, 2023. The experiment involved opening sluice gates at the base of Willwood Dam to draw down the dam pool which created energy to mobilize sediment deposits behind the dam. The U.S. Bureau of Reclamation released up to 4,000 cubic feet per second from Buffalo Bill Dam into the Shoshone River on the morning of April 11 and continued this magnitude of release through April 13. The release was intended to keep released sediments from behind Willwood Dam mobilized so they did not deposit on the bed of the Shoshone River downstream from Willwood Dam. The U.S. Geological Survey (USGS) and Willwood Irrigation District took measurements of turbidity and acoustic backscatter (ABS) as surrogate measures of suspended sediment. The measurements were taken at and near discontinued USGS streamgage 06284010 and at a boat ramp approximately 2500 feet downstream from 06284010. This data release consists of gage height, turbidity, and acoustic backscatter data.
DOI: 10.15468/dl.5tmsap
title: Occurrence Download

description: A dataset containing 873 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Apristurus nasutus de Buen, 1959"
 ]
}

 The dataset includes 873 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001124-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33tn29
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "StateProvince is Tabasco",
 "TaxonKey is Spatula clypeata (Linnaeus, 1758)"
 ]
}

 The dataset includes 53 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001125-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xg9jvu
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-110.07327 -37.19632,-89.25906 -37.19632,-89.25906 -23.90805,-110.07327 -23.90805,-110.07327 -37.19632))",
 "HasGeospatialIssue is false",
 "TaxonKey is Isurus oxyrinchus Rafinesque, 1810"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001126-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5z892s9v
title: MassIVE MSV000096931 - Shigella phage Sf14 structural proteins via shotgun proteomics
title: This entry is for a shotgun proteomic analysis of Sf14 lysate to determine which proteins are present in virions. Peptides were compared to the proteome of Sf14 and 2457T, which is a close relative of CFS100 that was used to propagate the phage.
DOI: 10.15468/dl.jq9rbf
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Alopias vulpinus (Bonnaterre, 1788)"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001129-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z55jvf
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Cephaloscyllium ventriosum (Garman, 1880)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001130-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zk7jej
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is North America",
 "StateProvince is Colorado",
 "TaxonKey is Ochotona princeps (Richardson, 1828)",
 "Year 1954-1956"
 ]
}

 The dataset includes 29 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001132-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxnfpn
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is Tabasco",
 "TaxonKey is Mazama temama (Kerr, 1792)"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001133-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60635/c3bp4f
title: Bocas del Toro_Dissolved Oxygen, Manual

description: Weekly Dissolved Oxygen values
 Bocas del Toro Research Station
 Locations: Seagrass, Coral Reef
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Bocas_del_Toro_Dissolved_Oxygen_Manual/10042532
DOI: 10.60635/c31c7p
title: Monthly summary_Agua Salud, Celestino Tower

description: Monthly and daily summaries from the Agua Salud Celestino Tower.
 Location 9.21142N, 79.72656W
 Parameters: air temperature, relative humidity, wind speed and direction, precipitation, solar radiation (pyranometer, photosynthetically active radiation), soil moisture, net radiation, air pressure, evapotranspiration.
 Established in 2015 and is located at the eastern edge of the Soberania Nation Park, in an area of pastures and forest patches. The tower is 40ft (12.2m) tall.
 Historical versions of this data package can be found at https://smithsonian.figshare.com/articles/dataset/Monthly_summary_Agua_Salud_Celestino_Tower/10059467
DOI: 10.60635/c3wk5r
title: Monthly summary_AVA Tower

description: Barro Colorado Island, AVA tower.
 Two Sensors: North and South
 Parameters: air temperature, relative humidity, wind speed and direction, precipitation, solar radiation (pyranometer, photosynthetically active radiation)
 Established in March, 2011 as part of the ForestGEO Tropical Ecology, Assessment and Monitoring (TEAM) project. The original tower was Located near the center of the island at the north west corner of the 50ha plot (9.1568°, -79.8486°). In 2018 this tower was struck by a tree fall and rendered unusable. In Feb. 2019 a new 45m tower was build close by (9.1568°, -79.8486°).
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Monthly_summary_AVA_Tower/10059461
DOI: 10.60635/c3rw2g
title: Monthly summary_Bocas Station

description: Monthly and daily summary from the Bocas del Toro Research Station
 Location: 9.351553°, -82.256565°
 Parameters: air temperature, relative humidity, wind speed and direction, precipitation, sea surface temperature, solar radiation (pyranometer), air pressure, dissolved oxygen, turbidity, salinity, pH
 Sensors located on a platform located approximately 60m from the end of the station’s dock. Platform includes a meteorological tower, Sea Surface Temperature probe and several sea level sensors. The current platform was built in 2012 to replace the original platform.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Monthly_summary_Bocas_Station/10059464
DOI: 10.60635/c3n30v
title: Monthly Summary_BCI, Vertical

description: Monthly and daily summary from Barro Colorado Island (BCI). Data organized in vertical format for long-term trend analysis
 Location 9°9'42.36"N, 79°50'15.67"W 
 Lutz catchment is a 9.73ha protected watershed on BCI. The Lutz tower was built in 1972 and was originally 42m. In 2002 it was increased to 48mThe data from 48m should be considered a separate data series from the data at 42m. Wind speed is significantly higher at 48m due to the distance to the top of the canopy. The Clearing is a small, open area surrounded by forest and some buildings. Station established in 1972 and consists of a Stevenson screen with max/min thermometers and air pressure sensor. Temperature/humidity sensor, rain gauge and evaporation sensors are located at various locations around the screen.
 Parameters: air temperature, relative humidity, wind speed and direction, precipitation, sea surface temperature, solar radiation (pyranometer), air pressure, soil moisture, runoff, potential evapotranspiration, wet/dry season starting dates
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Monthly_Summary_BCI_Vertical/10059458
DOI: 10.15468/dl.dwzn5r
title: Occurrence Download

description: A dataset containing 23326 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Negaprion brevirostris (Poey, 1868)"
 ]
}

 The dataset includes 23326 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001131-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60635/c37w2t
title: Hyperspectral Reflectance Data for Flowers, Fruits, Bark, and Leaves of Plants on Barro Colorado Island, Panama

description: This dataset contains hyperspectral reflectance measured on flowers, fruits, bark, and leaves of plants collected on Barro Colorado Island (BCI), Panama. Samples were collected mostly from fallen material on the forest floor or from understory plants. Samples were placed in individual zipper storage bags in a cooler with ice for transport back to the lab, where hyperspectral reflectance was measured using an ASD FieldSpec 4 Standard Resolution spectrometer. This initial data release contains data for samples collected between 2024/03/28 and 2024/11/29, and encompasses a total of 445 samples of 151 species. This includes 1 seed sample of 1 species, 173 flower samples of 78 species, 158 fruit samples of 77 species, 23 bark samples of 22 species, and 90 leaf samples of 40 species. Data collection is ongoing and this dataset will be expanded in future releases. The goal of this project is to contribute to the basis for automated species identification of woody plants in diverse tropical forests using hyperspectral imaging.
DOI: 10.60635/c34599
title: Agua Salud, Celestino Tower_Air Pressure

description: Agua Salud Celestino Tower.Location 9.21142N, 79.72656WAir Pressure, Interval averageEstablished in 2015 and is located at the eastern edge of the Soberania Nation Park, in an area of pastures and forest patches. The tower is 40ft (12.2m) tall.Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Agua_Salud_Celestino_Tower_Air_Pressure/10042547
DOI: 10.60635/c30c7c
title: SST_San Blas

description: STRI San Blas station climate and SST data.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/SST_San_Blas/10068065
DOI: 10.60635/c3vp43
title: SST_Coiba, Isla Jicarita

description: Sea Surface temperature monitoring at Isla Jicarita
 Locations -site, depth (m), coordinates:
 Isla Jicarita Sur 7.21364 -81.79917
 Isla Jicarita Este 7.20347 -81.80064
 Status: Inactive
 Electronic Sea Surface Temperature recorded using Onset Hobo temperature loggers
 Data represent spot readings at the time stamp.
 File Structure:
 Datetime (yyyy-mm-dd HH:MM), Raw Values (C), Curated Values (C), Notes1, Notes2
 Notes1 and Notes2 provide Quality Assurance information.
 Notes1 indicates quality of record. Possible values are:
 "adjusted" -&gt; Value of datum adjusted or gap filled
 "bad" -&gt; Datum failed one or more test and should not be used
 "doubtful" -&gt; Datum suspect and should be used with caution
 "good" -&gt; Datum accetible
 "missing" -&gt; Datum missing
 "nc" -&gt; Datum not yet checked
 Notes2 indicates the reason that a datum failed or was adjusted. Possible values are:
 "Calibration" -&gt; Sensor calibration corrected
 "Persistence" -&gt; Variation of data below expected range
 "Range" -&gt; Datum outside of 99.9 percentile
 "Spike" -&gt; Short-term increase or decrease of data significantly outside normal variance range
 "Gap Fill" -&gt; Data supplied from another source
 Quality Assurance Procedures:
 - Data are loaded into a custom-built program which permits easy visual examination of the data (including simultaneous viewing of rainfall data)
 - A gap-filling procedure is carried out to fill small (&lt;= 3 consecutive records) gaps with a simple straight line
 - Larger gaps (&lt; 24 hours) are filled manually by drawing a curve that best approximates the missing data based on complete, nearby data, as well as precipitation during the gap period. This is obviously subjective, but is believed to provide quite reasonable results.
 - Data are visually examined for anomalies and are flagged, and adjusted when necessary, as required.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/SST_Coiba_Isla_Jicarita/10068086
DOI: 10.60635/c3qw25
title: SST_Bahia Las Minas

description: Sea Surface temperature monitoring in Bahía de Las Minas
 Location (more exact coordinates available on request): 9.40 -79.82
 Status: Active
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/SST_Bahia_Las_Minas/10068077
DOI: 10.60635/c3m59n
title: Bocas del Toro, Transparency, Manual

description: Weekly Secchi disc water transparency
 Bocas del Toro Research Station
 Locations: Seagrass, Coral Reef
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Bocas_del_Toro_Transparency_Manual/10042499
DOI: 10.60635/c3gc7q
title: Bocas del Toro, Water Temperature, Manual

description: Temperature, daily and weekly (depending on location) values
 Bocas del Toro Research Station
 Locations: Dock, Aquarium, Seagrass, Coral Reef, Mangrove 'A', Mangrove 'B', Mangrove 'C', Colon Island Mud
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Bocas_del_Toro_Water_Temperature_Manual/10042529
DOI: 10.60635/c3gw20
title: Fortuna, Tower_Wind Direction

description: Wind Direction, Interval mean vector and standard deviation
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 Tower 15m
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Tower_Wind_Direction/10042646
DOI: 10.60635/c3c30c
title: Fortuna, Tower_Solar Radiation, Pyranometer

description: Solar Radiation, Pyranometer, Interval max/min/avg
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 Tower 15m
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Tower_Solar_Radiation_Pyranometer/10042616
DOI: 10.60635/c37c7j
title: Fortuna, Tower_Air Temperature

description: Air temperature, Electronic sensor, Interval value
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 There are three sensor locations: north clearing, south clearing, and a 15m tower.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Tower_Air_Temperature/10042628
DOI: 10.60635/c33k5m
title: Fortuna, Clearing_Relative Humidity, Manual

description: Relative Humidity, Manual, Daily wet/dry bulb temperature/Relative Humidity
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 There are three sensor locations: north clearing, south clearing, and a 15m tower.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Clearing_Relative_Humidity_Manual/10042613
DOI: 10.60635/c3zw2b
title: Fortuna, Clearing_Precipitation

description: Precipitation, Daily total
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 There are three sensor locations: north clearing, south clearing, and a 15m tower.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Clearing_Precipitation/10042619
DOI: 10.60635/c3v30q
title: Fortuna Clearing Air Temperature; Manual

description: Air Temperature, Manual, Daily max/min
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 North & South Clearing
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 There are three sensor locations: north clearing, south clearing, and a 15m tower.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Clearing_Air_Temperature_Manual/10042697
DOI: 10.15468/dl.sq6jja
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "StateProvince is Tabasco",
 "TaxonKey is Anas crecca Linnaeus, 1758"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001136-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60635/c3qc7w
title: Fortuna, Clearing_Air Temperature

description: Air Temperature, Interval value
 Fortuna station (Centro de Investigaciones Jorge L. Arauz)
 North Clearing shelter
 Location: 8° 43.340'N, 82° 14.241'W
 Located in the highlands of the Chiriqui Province, in western Panama.
 There are three sensor locations: north clearing, south clearing, and a 15m tower.
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Fortuna_Clearing_Air_Temperature/10042607
DOI: 10.60635/c3kk5z
title: Culebra_Wind Speed

description: Wind Speed, interval max/min/avg
 Punta Culebra Nature Center meteorological station. Established in 2002.
 Location: 8.910718°N, -79.528919°
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Culebra_Wind_Speed/10042595
DOI: 10.60635/c3fw2p
title: Culebra_Wind Direction

description: Wind Direction, interval mean vector, standard deviation
 Punta Culebra Nature Center meteorological station. Established in 2002.
 Location: 8.910718°N, -79.528919°
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Culebra_Wind_Direction/10042622
DOI: 10.60635/c3b595
title: Culebra_Solar Radiation, Pyranometer

description: Solar Radiation (Pyranometer), interval max/min/avg
 Punta Culebra Nature Center meteorological station. Established in 2002.
 Location: 8.910718°N, -79.528919°
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Culebra_Solar_Radiation_Pyranometer/10042604
DOI: 10.60635/c36c77
title: Culebra_Relative Humidity

description: Relative Humidity, interval max/min/avg
 Punta Culebra Nature Center meteorological station. Established in 2002.
 Location: 8.910718°N, -79.528919°
 Historical datasets can be located here: https://smithsonian.figshare.com/articles/dataset/Culebra_Relative_Humidity/10042598