cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11568675.v1
title: Pattern features of zebrafish upon varying long-range interaction scale in melanophore cell birth

description: We provide summary pattern features of model simulations of wild-type, shady, and pfeffer zebrafish patterns generated using the agent-based model from "Volkening A and Sandstede B (2018) Iridophores as a source of robustness in zebrafish stripes and variability in Danio patterns. Nat. Commun. 9(3231)." <br>The simulations were run by varying the inner radius parameter corresponding to the long-range interaction scale in melanophore cell birth from 10 to 400 um in increments of 25 um (default parameter value from the model is 210 um). We ran 100 simulations under each parameter regime for wild-type, pfeffer, and shady (the nacre mutation lacks melanophore cells so we don't include it in this dataset). <br>The shady patterns were generated by turning off cell birth for iridiopores, and, the pfeffer patterns were generated by turning off cell birth for xanthophores. All simulations were run in MATLAB. <br>For wild type, the summary pattern features provide statistics about the simulation outputs in terms of topological betti numbers of the stripe patterns, stripe width, straightness of stripes, local cell-cell distances and local cell-cell densities, day in which stripes the second and third interstripes X1V and X1D form, and the melanophore coefficient of variation. For the shady and pfeffer mutations, the summary pattern features provide statistics about the simulation outputs in terms of topological betti numbers of the spot patterns, size of each cluster/spot, alignment of the spots, roundness of the spots (pca ev ratio), local cell-cell distances and local cell-cell densities, and the melanophore coefficient of variation. All of these pattern features were computed automatically using the methods from "McGuirl M, Volkening A, and Sandstede B (2019) Topological data analysis of zebrafish patterns. arXiv. 1910.08433." <br>All data are in the form of .mat files and the pattern features are contained in the pattern_info variable. We also provide .csv files which the data from each parameter regime in a single file.
DOI: 10.6084/m9.figshare.1290327.v7
title: Default Mode Network, Motor Network, Dorsal and Ventral Basal Ganglia Networks in the Rat Brain: Comparison to Human Networks Using Resting State-fMRI: The Raw Data

description: See the paper in PLOS1
DOI: 10.6084/m9.figshare.20152544.v1
title: Climate data

description: Direct link of climate scenarios from WorldClim v2.1.
DOI: 10.6084/m9.figshare.21554595.v1
title: Illumina adapters

description: Sequencing adapter fasta file used for quality control of short read (Illumina) metagenomes
DOI: 10.6084/m9.figshare.26143534.v1
title: A Similarity Law-based Approach for Transferability of Urban Expansion Model

description: Abstract: Due to spatial heterogeneity and temporal non-stationarity, urban expansion models are often only applicable locally. This paper proposes a similarity law-based method for transferability of urban expansion model. The method utilizes the geographically optimal similarity (GOS) model to realize the transfer of the transition rules based on the similarity of geographical configurations. The model is applied to the Beijing-Tianjin-Hebei region for empirical analysis, the results show that (1) The proposed method can better capture the shift of urban expansion strategies during validation period. The figure of merit (FoM) of results using the local transition rules is on average 0.010 higher and the fuzzy similarity of different (FSD) is on average 0.025 higher than those using the transition rules transfer from Beijing in calibration period, but in validation period the FoM is on average 0.018 lower and the FSD is on average 0.033 lower. (2) The similarity of urban expansion strategies varies among different cities, selecting appropriate cities for the transfer of transition rule can make the results of proposed method perform better. For example, during validation period, in Shijiazhuang, the transition rule transferred from Beijing is preferable to that transferred from Xingtai, while in Handan and Hengshui, it is opposite.
DOI: 10.6084/m9.figshare.22117502.v1
title: data.xlsx

description: supply chain network data
DOI: 10.6084/m9.figshare.7814297.v1
title: random media meshes, https://arxiv.org/abs/1902.03968, sec. 3.3

description: Triangular 2d finite element meshes with polydisperse nonoverlapping spherical exclusions
DOI: 10.17632/hy8kwmxmph
title: Genetic classification helps with precise sirolimus treatment in slow-flow vascular malformations: A prospective cohort study

description: Background: Targeted therapy of slow-flow vascular malformations (SFVM) needs genetic classification. The efficacy differences between genotypes are still vague.
Objective: To investigate the genomic spectrum of SFVM and sirolimus efficacy differences between various genotypes and phenotypes.
Methods: In a genetic cohort study based on a biobank, participants prospectively received biopsy and genetic sequencing to investigate the genomic spectrum of SFVM. In the sirolimus cohort study, participants of 3 groups based on genetic classifications prospectively received sirolimus for 6 months.
Results: 263 samples from 214 participants were enrolled in the genetic cohort, yielding an overall genetic diagnosis rate of 60.98%. We classified the genetic subtypes as PIK3CA-related vascular malformation (PRVM), TEK-related vascular malformation (TRVM), special types (ST), and non-diagnosed types (ND). 41 participants received a 6-month sirolimus treatment. The total response rate (tRR) and objective response rate (ORR) were 87.80% and 48.78%. ORR of the mutated group (PRVM+TRVM, 64.29%) was significantly higher than ND (15.38%). tRR and ORR of Klippel-Trenaunay syndrome (KTS, 55.56%, 33.33%) were lower than non-KTS SFVM (96.88%, 53.13%).
Limitations: Non-placebo, nonrandomization, small sample size, and single-center design.
Conclusion: Genetic classification may help to indicate targeted therapy. Non-KTS PRVM and TRVM benefit more from sirolimus treatment in lesion regression.
DOI: 10.6084/m9.figshare.5594527.v1
title: Novel bacterial lineages associated with boreal moss species

description: 16S rRNA Gene amplicons of 7 moss species from Fairbanks, AK and their associated environmental data. The amplicons are Illumina MiSeq 2 x 150 bp paired-end reads.<br><br>- demultiplexed_seqs_1.fq: the forward reads<br>- demultiplexed_seqs_2.fq: the reverse reads<br>- MossMds_mapping_publication.csv: the environmental data and barcodes associated with the sequences<br>
DOI: 10.6084/m9.figshare.3559014.v1
title: Appendix B. The coral life-history framework by Darling et al. (2012) applied to high-latitude coral communities of eastern Australia.

description: The coral life-history framework by Darling et al. (2012) applied to high-latitude coral communities of eastern Australia.
DOI: 10.17632/ddshhpn2k6
title: Data for: Efficiency assessment of Iran's petroleum refining industry in the presence of unprofitable output: a dynamic two-stage slacks-based measure

description: Petroleum refineries inputs and outputs data in Iran 2011-2015. Available from: http://www.niordc.ir/index.aspx?fkeyid=&siteid=78&pageid=1787
DOI: 10.17632/ww83r63rtr
title: Good and bad classification of Fresh CARROT

description: Dataset Description: Carrot (Daucus carota) Classification

1. Overview

This dataset consists of images of good and bad carrots collected for classification purposes. The dataset aims to support machine learning models in distinguishing between high-quality (good) and defective (bad) carrots based on visual attributes.

2. Data Collection Method

Sample Size: Over 500 carrots (both good and bad).

Imaging Device: Realme 11x mobile camera.

Lighting Condition: Natural daylight.

Background: Black, ensuring clear contrast between the carrot and its surroundings.

Image Orientation: Carrots placed in a consistent manner to maintain uniformity across the dataset.


3. Classification Criteria

Good Carrots:

Smooth and firm surface.

Uniform color (bright orange without discoloration).

No visible cracks, mold, or deformities.

Proper shape (not overly twisted or misshapen).


Bad Carrots:

Surface irregularities (cracks, bruises, or mold).

Discoloration (dark spots, pale or green patches).

Deformed or forked shapes.

Signs of wilting or shriveling.



4. Potential Applications

Machine learning-based quality control in agriculture and food industries.

Automated sorting of carrots in packaging units.

Research on visual classification techniques in agricultural produce.


Would you like me to include additional details, such as image resolution or preprocessing techniques
DOI: 10.6084/m9.figshare.26978119.v3
title: GCAM outputs that consider the global change impacts

description: This repository provides the GCAM outputs dataset and the Python code used in the study:Role of forest carbon change in shaping future land use and land cover changeMeng Luo<sup>1</sup>, Xin Zhao<sup>2</sup>, Dalei Hao<sup>3</sup>, Ben Bond-Lamberty<sup>2</sup>, Adam Daigneault<sup>4</sup>, Pralit L Patel<sup>2</sup>, Sian Kou-Giesbrecht<sup>5</sup>, Christopher P.O. Reyer<sup>6</sup>, Hamid Dashti<sup>1</sup>, Min Chen<sup>1</sup><sup>1</sup>Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, United States.<sup>2</sup>Joint Global Change Research Institute, Pacific Northwest National Laboratory, United States.<sup>3</sup>Atmospheric, Climate, & Earth Sciences Division, Pacific Northwest National Laboratory, United States.<sup>4</sup>School of Forest Resources, University of Maine, United States.<sup>5</sup>Department of Earth and Environmental Sciences, Dalhousie University, Canada.<sup>6</sup>Potsdam Institute for Climate Impact Research, Member of the Leibniz Association, Germany.Corresponding author: Min Chen (min.chen@wisc.edu)<br>Other related code can be found at https://github.com/MengLuo-Sara/Climate-change_GCAM/tree/main
DOI: 10.6084/m9.figshare.27985730.v1
title: LHI nutrients MS

description: The nutrients and SIA data cannot be reused without written permission from all authors
DOI: 10.6084/m9.figshare.14778618.v1
title: Appendix 3: Student Survey Design

description: Description of survey instrument design.
DOI: 10.4121/uuid:915d2bfb-7e84-49ad-a286-dc35f063a460
title: Sepsis Cases - Event Log

description: This real-life event log contains events of sepsis cases from a hospital. Sepsis is a life threatening condition typically caused by an infection. One case represents the pathway through the hospital. The events were recorded by the ERP (Enterprise Resource Planning) system of the hospital. There are about 1000 cases with in total 15,000 events that were recorded for 16 different activities. Moreover, 39 data attributes are recorded, e.g., the group responsible for the activity, the results of tests and information from checklists. Events and attribute values have been anonymized. The time stamps of events have been randomized, but the time between events within a trace has not been altered.
DOI: 10.6084/m9.figshare.155796.v1
title: Raw data from sodium current recordings obtained from tagged human sodium channels (Nav1.5) expressed in HEK293 cells.

description: For each channel type the cells are numbered starting from 1. For the sake of similar conditions (cells from the same passage, recordings on the same day, same solution aliquots), new cells have been recorded for the tag study. There are two sheets per channel type: one with data from the current voltage (I/V) activation, together with the steady-state inactivation (SSI) protocol; and a second one with data obtained with the onset of slow inactivation (OSI) and the recovery from inactivation (RFI) protocol. For some cells, only some of the protocols have been applied (thus non-continuous cell numbering in some OSI/RFI sheets). All measured voltages are given in mV; cell capacitance was measured in pF. Note that the cells transfected with untagged hNav1.5 used for comparison with mNav1.5 are not the same as in the study with different tags. See Figure 2 and 4 for information about the applied protocols.
DOI: 10.17632/mbvhhf8m62
title: Developmental heart - filtered and unfiltered count matrices and meta tables

description: Filtered and unfiltered scRNA-seq and ST count matrices and meta tables from the article:
Asp M. et al. A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart. Cell. 2019 Dec 12;179(7):1647-1660.e19. doi: 10.1016/j.cell.2019.11.025
DOI: 10.6084/m9.figshare.5946607.v1
title: PNPLA3xNASH Brazil.xlsm

description: Data of PNPLA3 x NASH study in Brazil
DOI: 10.6084/m9.figshare.19689214.v1
title: April 2022 Covid-19 Twitter Streaming Dataset

description: The file contains Tweet IDs* for COVID-19 related tweets collected in <b>April, 2022</b> from <b>Twitter's COVID-19 Streaming Endpoint </b>via a custom script developed by the <b>Social Media Lab (https://socialmedialab.ca/)</b>.<br>Visit <b>our interactive dashboard at https://stream.covid19misinfo.org</b>/ for a preview and some general stats about this COVID-19 Twitter streaming dataset.<br>For more info about <b>Twitter's COVID-19 Streaming Endpoint</b>, visit <b>https://developer.twitter.com/en/docs/labs/covid19-stream/overview</b><br><b>Note</b>: In accordance with Twitter API Terms, the dataset only includes Tweet IDs (as opposed to the actual tweets and associated metadata). To recollect tweets contained in this dataset, you can use programs such as Hydrator (https://github.com/DocNow/hydrator/) or the Python library Twarc (https://github.com/DocNow/twarc/).
DOI: 10.6084/m9.figshare.25337869.v1
title: "A Stress Induced Source of Phonon Bursts and Quasiparticle Poisoning" processed datasets

description: Processed datasets for data taking runs comparing the backgrounds of a glued and hanging low threshold dark matter calorimeters to study the "low energy excess." See the paper "A Stress Induced Source of Phonon Bursts and Quasiparticle Poisoning" availible on the arXiv.
DOI: 10.6084/m9.figshare.25822990.v1
title: All Data

description: prism file of all data from Gautham, Miner, Franco, Thornquist, Crickmore
DOI: 10.6084/m9.figshare.6291650.v1
title: C. PIPIENS WOLBACHIA PAN GENOME

description: <b>The pangenome for four Wolbachia genomes recovered in Reveillaud et al and the wPip reference genome.</b><br>Details of the study and a reproducible bioinformatics workflow:<br>http://merenlab.org/data/wolbachia-plasmid/<br><br>All public data files in this collection:<br>https://figshare.com/projects/A_Wolbachia_Plasmid_by_Reveillaud_and_Bordenstein_et_al_2018_/32069
DOI: 10.17632/zng5h3vhtt
title: Ventricular–arterial coupling (VAC)  in a population-based cohort of middle-aged individuals  -The STANISLAS cohort

description: Data exploring normal values of different ventricular–arterial coupling (VAC) parameters and their association with anthropometric and cardiovascular (CV) factors are scarce. We aim to report values of two different methods of VAC assessment according to age and sex and explore their association with CV factors within a large population-based cohort of middle-aged individuals. For 1333 (mean age 48±14) individuals participating in the 4th visit of the STANISLAS cohort, VAC was assessed by two methods: (1) arterial elastance (Ea) / end-systolic elastance (Ees) and (2) Pulse wave velocity (PWV)/Global longitudinal strain (GLS). The mean values of Ea/Ees and PWV/GLS were 1.06±0.20 and 0.42±0.12, respectively. The two methods of VAC assessment were poorly correlated (Pearson’s correlation coefficient r = 0.14 (0.08;0.19)). Increased PWV/GLS was associated with older age and a higher degree of cardiovascular risk factors (i.e., BMI, blood pressure, LDL, diabetes, hypertension) in the whole population as well as in the parent generation. In contrast, higher Ea/Ees were associated with decreasing age, and lower prevalence of risk factors in the whole cohort but neutrally associated with risk factors in the parent generation. Higher PWV/GLS is significantly associated with CV factors regardless of age. In contrast, worse Ea/Ees is associated with a better CV risk profile when considering individuals aged 30 to 70 but neutrally associated with CV factors when considering only older patients. These results may suggest that PWV/GLS should preferably be used to explore VAC. In addition, age-individualized threshold of Ea/Ees should be used.
DOI: 10.6084/m9.figshare.14140997.v1
title: Genelist_Top 100 human genes down-regulated under hypoxic conditions

description: Top 100 human genes down-regulated under hypoxic conditions based on meta-analysis
DOI: 10.6084/m9.figshare.24947565.v1
title: Genome assembly and annotation of Panicum miliaceum AJ8

description: AJ8.repeat.gff.gz: repeat annotationCHBZGL.gff3.gz: gene structure annotationAJ8.T2T.fasta:genome assembly
DOI: 10.6084/m9.figshare.28942043.v2
title: Données et Script R - Stage CRBE 2025 - Lucas Point - M1 BEE EA - Université de Toulouse

description: Data & R scripts created for my 2025' internship at the CRBE for my M1 at the Université de Toulouse
DOI: 10.17632/p4c67hhwm8
title: A Comparative Study between the plant Justicia Adathoda and it's Semisynthetic drugs and Teratological Potential

description: Pharmacological activity of the plant Justicia Adathoda and it's teratological potential.

The plant Adathoda, also known as Justicia adhatoda, has been used in traditional medicine for various purposes. Researchers have extracted and isolated several compounds from this plant, including vasicinone and vasicine, which have shown promising pharmacological activities ¹.

*Semisynthetic Derivatives:*

One of the semisynthetic derivatives of vasicine is VA-1, which was synthesized through an acetylation reaction. VA-1 has shown potent antiplasmodial activity against Plasmodium falciparum, with an IC50 value of 6.0 µg/mL ¹.

*Pharmacology:*

The pharmacological activities of vasicinone, vasicine, and VA-1 include:

Antiplasmodial activity: Vasicinone, vasicine, and VA-1 have shown antiplasmodial activity against Plasmodium falciparum, with VA-1 being the most potent.

Antimicrobial activity: The extracts of Justicia adhatoda have shown antimicrobial activity against various microorganisms.

Anti-inflammatory activity: Vasicinone and vasicine have shown anti-inflammatory activity, although the exact mechanism is not well understood ¹.

Overall, the semisynthetic derivatives of Adathoda, particularly VA-1, show promising pharmacological activities, especially in the treatment of malaria. However, further research is needed to fully explore their potential therapeutic applications.
DOI: 10.6084/m9.figshare.20304711.v1
title: patient information.xlsx

description: This dataset provides the basic clinical data of the patients and the occurrence of cardiovascular events during the follow-up period
DOI: 10.6084/m9.figshare.28400567.v1
title: Lisgaras and Scharfman Data IIS vs HFO paper.xlsx

description: This dataset is related to an analysis of high frequency oscillations and interictal spikes in mouse models of Alzheimer's disease and epilepsy.
DOI: 10.6084/m9.figshare.7106069.v1
title: PLEWA04_ORF.cds.fa.gz

description: P. waltl ORF prediction (CDS)Ver. PLEWA04_ORF<br>
DOI: 10.25400/lincolnuninz.8829212.v1
title: Meteorological observations at Lincoln: 1965

description: Lincoln meteorological observations have been taken at a range of sites over the years. A NIWA report (Mullan, A.B; Stuart, S.J; Hadfield, M.G; Smith, M.J (2010). Report on the Review of NIWA's 'Seven-Station' Temperature Series. NIWA Information Series No. 78. pp.129-154) records a number of these along with the work undertaken to reconcile the data between different sites. It is not yet clear which site(s) these measurements were taken at as we have not yet identified a correspondence with NIWA's records.<br><br>The datasets had been stored as .DAT files. The .DAT files have been uploaded as is, and also standardised and converted into .csv format.<br><br>Headers: The original .DAT files were stored without headers. Most of these could be recovered for the .csv by running the data through an old program that had been used in conjunction with the data, but one column remains "unknown".<br><br>Missing data: In the .DAT files, missing measurements are variously recorded, depending on context, as 0, -9, -99 or (in the case of Cloud cover) 9. In the .csv these values have been removed and left blank.<br><br>Units are most likely:<br><br>* solar radiation - probably MJ/m2 (megajoules per square metre)<br>* temperatures - Celsius (in early years possibly converted from an original measurement in Fahrenheit)<br>* rainfall - millimetres<br>* cloud - oktas (eighths of the sky taken up by cloud)<br>* wind run - kilometres<br>* vapour pressure - probably Pa (pascals)
DOI: 10.6084/m9.figshare.12756491.v1
title: Dependent variable (armed conflict events) and independent variables (stable background contexts and climate deviations related covariates)

description: Dependent variable (armed conflict events) and independent variables (stable background contexts and climate deviations related covariates) are used to infer potential mechanism and simulate the risk of armed conflicts across worldwide from 2000-2015.
DOI: 10.6084/m9.figshare.17710829.v1
title: The Phlegrean Fields volcanological evolution

description: A volcanological map merging continental and marine areas of the Phlegrean Fields and Procida Island (Southern Italy) is presented at the 1:25,000 scale. The map is based on 1:5,000 field mapping, and marine geology survey carried out during the Italian CAR.G (Geological CARtography, Servizio Geologico d’Italia) project and on bathymetric and seismic data. Geological data are represented on a digital terrain model of the volcano. This allows better visualization of the main morphological, volcanic, and geological features. The legend is organized in seven activity phases identified based on updated absolute ages of eruptions defining periods of high volcanicity and stasis. The geological map highlights the evolutive history of the Phlegrean Fields volcanic field both in the marine and continental portions, and the reconstructed structural framework and evolution of the caldera formed 39.3 Ky ago in its continental and submerged portions.
DOI: 10.6084/m9.figshare.23552964.v1
title: The raw data of resting EEG of patients with prolonged disorders of consciousness

description: The dataset consists of resting-state electroencephalogram (EEG) data in dat format from 32 healthy individuals and 59 patients with consciousness disorders. Each data segment comprises 60 epochs, with each epoch lasting 2 seconds. There are 62 electrode points, and the sampling rate is 250 Hz.
DOI: 10.6084/m9.figshare.28783613.v1
title: Data of 400-meter runners according to warm-up protocols

description: This study examined the impact of inspiratory muscle warm-up protocols on the performance of elite male 400-meter runners. It found that using IWU at intensities of 40% and 60% of maximal inspiratory pressure significantly enhanced sprint performance, improved respiratory muscle strength, and accelerated lactate clearance after exercise. These findings highlight the potential of IWU as a practical strategy for optimizing sprint outcomes in elite athletics.
DOI: 10.17632/759b4wmpx8
title: Metabolomic analysis of acerola cherry

description: Through comprehensive metabolites analysis via ultra-high-performance liquid chromatography coupled with quadrupole-time-of-flight mass spectrometry system (UPLC-QTOF), 3,775 annotated metabolites were measured.
DOI: 10.17632/btcbhzz5f7
title: Statistical Data on Tourism in India -Post Independence

description: The data on tourism-related economic indicators are compiled from the multiple data sources and reports.