cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14102111.v1
title: data.xlsx

description: data of Influences of hydrophilic components of two anthropogenic dissolved organic nitrogen groups on phytoplankton growth in Jiaozhou Bay, China
DOI: 10.6084/m9.figshare.14102111
title: data.xlsx

description: data of Influences of hydrophilic components of two anthropogenic dissolved organic nitrogen groups on phytoplankton growth in Jiaozhou Bay, China
DOI: 10.5258/soton/d1314
title: Data to support Superposition of intra- and inter-layer excitons in twistronic MoSe2/WSe2 bilayers probed by resonant Raman scattering

description: The experimental data here contributed to the paper entitled "Superposition of intra- and inter-layer excitons in twistronic MoSe2/WSe2 bilayers probed by resonant Raman scattering", in 2D Materials. DOI: 10.1088/2053-1583/abe778 The files in this repository contain: Reflectivity spectra measured for several MoSe2/WSe2 heterobilayers, a WSe2 monolayer and for references spectra taken on van der waals stacks containing hBN and Graphite. These spectra were measured at 4 K relative to the SiO2/Si substrate. Resonance Raman Data for monolayer WSe2 and four MoSe2/WSe2 Heterobilayers with twist angles of 57, 20, 6 and 60 degrees. All data was obtained using excitation energies from 2.05 to 2.25 eV at 4 K and is resonant with the WSe2 B1s exciton.
DOI: 10.15468/y7vrn6
title: Four new species of Heteromysis (Crustacea: Mysida) from public aquaria in Hawaii, Florida, and Western to Central Europe

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wittmann, Karl J., Abed-Navandi, Daniel (2021): Four new species of Heteromysis (Crustacea: Mysida) from public aquaria in Hawaii, Florida, and Western to Central Europe. European Journal of Taxonomy 735: 133-175, DOI: https://doi.org/10.5852/ejt.2021.735.1247
DOI: 10.5281/zenodo.4559696
title: The Surface Water Chemistry (SWatCh) database

description: This is the dataset presented in the following manuscript: The Surface Water Chemistry (SWatCh) database: A standardized global database of water chemistry to facilitate large-sample hydrological research, which is currently under review at Earth System Science Data. Openly accessible global scale surface water chemistry datasets are urgently needed to detect widespread trends<br> and problems, to help identify their possible solutions, and identify critical spatial data gaps where more monitoring is required. Existing datasets are limited in availability, sample size/sampling frequency, and geographic scope. These limitations inhibit the answering of emerging transboundary water chemistry questions, for example, the detection and understanding of delayed recovery from freshwater acidification. Here, we begin to address these limitations by compiling the global surface water chemistry (SWatCh) database. We collect, clean, standardize, and aggregate open access data provided by six national and international agencies to compile a database consisting of three relational datasets: sites, methods, and samples, and one GIS shapefile of site locations. We remove poor quality data (for example, values flagged as “suspect”), standardize variable naming conventions and units, and perform other data cleaning steps required for statistical analysis. The database contains water chemistry data across seven continents, 17 variables, 38,598 sites, and over 9 million samples collected between 1960 and 2019. We identify critical spatial data gaps in the equatorial and arid climate regions, highlighting the need for more data collection and sharing initiatives in these areas, especially considering freshwater ecosystems in these environs are predicted to be among the most heavily impacted by climate change. We identify the main challenges associated with compiling global databases – limited data availability, dissimilar sample collection and analysis methodology, and reporting ambiguity – and provide recommendations to address them. By addressing these challenges and consolidating data from various sources into one standardized, openly available, high quality, and trans-boundary database, SWatCh allows users to conduct powerful and robust statistical analyses of global surface water chemistry.
description: The code used to generate the SWatCh database is published on Github: https://github.com/LobkeRotteveel/SWatCh
DOI: 10.6084/m9.figshare.3761562.v1785
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.14075372.v10
title: RNAseq_Goodwin et al_Feb2021

description: RNAseq data supporting the Goodwin et al manuscript
DOI: 10.5281/zenodo.4559776
title: JC1 liver Chow/HDF 12w/CD-HFD 16 weeks

description: JC1 panel on liver from mice fed
DOI: 10.5281/zenodo.4559775
title: JC1 liver Chow/HDF 12w/CD-HFD 16 weeks

description: JC1 panel on liver from mice fed
DOI: 10.5281/zenodo.4556863
title: High-precision two-photon patterning of biomolecules in photo-instructive hydrogels

description: Photo-responsive hydrogels can be employed to coordinate the organization of proteins in three dimensions (3D) and thus to spatiotemporally control their physiochemical properties by light. However, reversible and user-defined tethering of proteins and protein complexes to biomaterials pose a considerable challenge as this is a cumbersome process, which, in many cases, does not support the precise localization of biomolecules in z-direction. For this reason, we developed a generic approach to micropattern hydrogels with proteins. By exploiting the two-photon excitation of a small lock-and-key interaction pair, we established the protein mounting of hydrogels with micrometer precision. Enhanced by photo-sensitizers, two-photon lithography allowed the user-defined 3D protein immobilization in hydrogels with great flexibility, fidelity, and under mild light doses. Our protein-binding strategy allows the patterning of a wide variety of proteins and offers the possibility to dynamically modify the biofunctional properties of materials in 3D with single-digit micrometer precision.
DOI: 10.5281/zenodo.4556862
title: High-precision two-photon patterning of biomolecules in photo-instructive hydrogels

description: Photo-responsive hydrogels can be employed to coordinate the organization of proteins in three dimensions (3D) and thus to spatiotemporally control their physiochemical properties by light. However, reversible and user-defined tethering of proteins and protein complexes to biomaterials pose a considerable challenge as this is a cumbersome process, which, in many cases, does not support the precise localization of biomolecules in z-direction. For this reason, we developed a generic approach to micropattern hydrogels with proteins. By exploiting the two-photon excitation of a small lock-and-key interaction pair, we established the protein mounting of hydrogels with micrometer precision. Enhanced by photo-sensitizers, two-photon lithography allowed the user-defined 3D protein immobilization in hydrogels with great flexibility, fidelity, and under mild light doses. Our protein-binding strategy allows the patterning of a wide variety of proteins and offers the possibility to dynamically modify the biofunctional properties of materials in 3D with single-digit micrometer precision.
DOI: 10.25646/8063
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.5281/zenodo.4450222
title: Datasets for "Search for shallow subsurface structures in Chryse and Acidalia Planitiae on Mars"

description: Datasets for "Search for shallow subsurface structures in Chryse and Acidalia Planitiae on Mars" Oura et al., 2021, Icarus CAP_SHARAD_list.csv: List of SHARAD observations used in this study CAP_subsurface_reflectance_revised.csv: Locations of identified subsurface reflectors FPB_xxxxxxxxxx.tiff/png: Radargrams and cluttergrams generated by CO-SHARPS HI_003222_2055_018834_2060-ALIGN-DEM.tif: HiRISE DTM used in this study HI_003222_2055_018834_2060-ALIGN-DRG.tif: HiRISE orthoimage used in this study HI_046473_2075_050877_2075-ALIGN-DEM.tif: HiRISE DTM used in this study HI_046473_2075_050877_2075-ALIGN-DRG.tif: HiRISE orthoimage used in this study
DOI: 10.5281/zenodo.4559809
title: Dataset to Manuscrip: Deep soil flipping increases carbon stocks of New Zealand grasslands

description: Dataset to the mansucript: Schiedung, M., Tregurtha, C. S., Beare, M. H., Thomas, S. M. and Don, A.: Deep soil flipping increases carbon stocks of New Zealand grasslands, Glob. Chang. Biol., 25(7), 1–14, doi:10.1111/gcb.14588, 2019. All parameters and variables are explained in file: Schiedung_et_al_2019_GCB_LOOK_UP
DOI: 10.5281/zenodo.4559808
title: Dataset to Manuscrip: Deep soil flipping increases carbon stocks of New Zealand grasslands

description: Dataset to the mansucript: Schiedung, M., Tregurtha, C. S., Beare, M. H., Thomas, S. M. and Don, A.: Deep soil flipping increases carbon stocks of New Zealand grasslands, Glob. Chang. Biol., 25(7), 1–14, doi:10.1111/gcb.14588, 2019. All parameters and variables are explained in file: Schiedung_et_al_2019_GCB_LOOK_UP
DOI: 10.15468/xnksb2
title: Systematic revision of dactylogyridean parasites (Monogenea) from cichlid fishes in Africa, the Levant and Madagascar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pariselle, Antoine, Euzet, Louis (2009): Systematic revision of dactylogyridean parasites (Monogenea) from cichlid fishes in Africa, the Levant and Madagascar. Zoosystema 31 (4): 849-898, DOI: 10.5252/z2009n4a6, URL: http://www.bioone.org/doi/abs/10.5252/z2009n4a6
DOI: 10.6084/m9.figshare.13371167
title: Cascading effects of N fertilization activate biologically driven mechanisms promoting P availability

description: Ecosystem structure and function of a semiarid grassland
DOI: 10.6084/m9.figshare.13371167.v1
title: Cascading effects of N fertilization activate biologically driven mechanisms promoting P availability

description: Ecosystem structure and function of a semiarid grassland
DOI: 10.5281/zenodo.4559877
title: Different dimensions of well-being and income inequalities in CEE countries between 2004-2018

description: Data were used to explore links between different dimension of well-being and income inequalities in Central Eastern European Countries in the period between 2004 and 2018.
DOI: 10.5281/zenodo.4415209
title: Different dimensions of well-being and income inequalities in CEE countries between 2004-2018

description: Data were used to explore links between different dimension of well-being and income inequalities in Central Eastern European Countries in the period between 2004 and 2018.
DOI: 10.5281/zenodo.4559652
title: Supplementary data to publication "Effect of maternal supplementation with essential fatty acids and conjugated linoleic acid on metabolic and endocrine development in neonatal calves"

description: Supplementary data to publication "Effect of maternal supplementation with essential fatty acids and conjugated linoleic acid on metabolic and endocrine development in neonatal calves" in Journal of Dairy Science; https://doi.org/10.3168/jds.2020-20039
DOI: 10.5281/zenodo.4559651
title: Supplementary data to publication "Effect of maternal supplementation with essential fatty acids and conjugated linoleic acid on metabolic and endocrine development in neonatal calves"

description: Supplementary data to publication "Effect of maternal supplementation with essential fatty acids and conjugated linoleic acid on metabolic and endocrine development in neonatal calves" in Journal of Dairy Science; https://doi.org/10.3168/jds.2020-20039
DOI: 10.6084/m9.figshare.14102243
title: Supplementary Material for: Deoxycytidine Kinase (<b><i>DCK</i></b>) Mutations in Human Acute Myeloid Leukemia Resistant to Cytarabine

description: Resistance to cytarabine is an important cause of therapy failure in persons with acute myeloid leukemia (AML). Deoxycytidine kinase, encoded by <i>DCK</i>, catalyzes phosphorylation of cytarabine to cytarabine monophosphate, a necessary step for eventual incorporation of cytarabine triphosphate into DNA and for clinical efficacy. Whether <i>DCK</i> mutations make AML cells resistant to cytarabine is controversial. We studied <i>DCK</i> mutations and messenger RNA (mRNA) concentrations in leukemia cells from 10 subjects with AML who received cytarabine-based therapy and relapsed and in 2 artificially induced cytarabine-resistant AML cell lines. <i>DCK</i> mutations were detected in 4 subjects with AML relapsing after achieving a complete remission and receiving high-dose cytarabine postremission therapy. Most mutations were in exons 4–6 and were not present before therapy. <i>DCK</i> was also mutated in cytarabine-resistant but not parental AML cell lines. <i>DCK</i> mRNA concentrations were significantly decreased in cytarabine-resistant K562 and SHI-1 cells compared with cytarabine-sensitive parental cells. Mutation frequency of <i>DCK</i> and mRNA concentration did not correlate with the extent of cytarabine resistance indicating other factors operate. Overexpression of wild-type <i>DCK</i> restored cytarabine sensitivity to previously resistant leukemia cell lines. Our data contribute to the understanding of cytarabine resistance in persons with AML.
DOI: 10.6084/m9.figshare.14102243.v1
title: Supplementary Material for: Deoxycytidine Kinase (<b><i>DCK</i></b>) Mutations in Human Acute Myeloid Leukemia Resistant to Cytarabine

description: Resistance to cytarabine is an important cause of therapy failure in persons with acute myeloid leukemia (AML). Deoxycytidine kinase, encoded by <i>DCK</i>, catalyzes phosphorylation of cytarabine to cytarabine monophosphate, a necessary step for eventual incorporation of cytarabine triphosphate into DNA and for clinical efficacy. Whether <i>DCK</i> mutations make AML cells resistant to cytarabine is controversial. We studied <i>DCK</i> mutations and messenger RNA (mRNA) concentrations in leukemia cells from 10 subjects with AML who received cytarabine-based therapy and relapsed and in 2 artificially induced cytarabine-resistant AML cell lines. <i>DCK</i> mutations were detected in 4 subjects with AML relapsing after achieving a complete remission and receiving high-dose cytarabine postremission therapy. Most mutations were in exons 4–6 and were not present before therapy. <i>DCK</i> was also mutated in cytarabine-resistant but not parental AML cell lines. <i>DCK</i> mRNA concentrations were significantly decreased in cytarabine-resistant K562 and SHI-1 cells compared with cytarabine-sensitive parental cells. Mutation frequency of <i>DCK</i> and mRNA concentration did not correlate with the extent of cytarabine resistance indicating other factors operate. Overexpression of wild-type <i>DCK</i> restored cytarabine sensitivity to previously resistant leukemia cell lines. Our data contribute to the understanding of cytarabine resistance in persons with AML.
DOI: 10.6084/m9.figshare.14102402
title: Supplementary Material for: Genetic Polymorphisms in Activating Transcription Factor 3 Binding Site and the Prognosis of Early-Stage Non-Small Cell Lung Cancer

description: <b><i>Background:</i></b> Activating transcription factor 3 (ATF3) plays a significant role in cancer development and progression. We investigated the association between variants in expression quantitative trait loci (eQTLs) within ATF3 binding regions and the prognosis of non-small cell lung cancer (NSCLC) after surgery. <b><i>Methods:</i></b> A total of 772 patients with NSCLC who underwent curative surgery were enrolled. Using a public database (http://galaxyproject.org), we selected 104 single nucleotide polymorphisms (SNPs) in eQTLs in the ATF3 binding regions. The association of those SNPs with disease-free survival (DFS) was evaluated. <b><i>Results:</i></b> Among those SNPs, <i>HAX1</i> rs11265425T&gt;G was associated with significantly worse DFS (aHR = 1.30, 95% CI = 1.00–1.69, <i>p</i> = 0.05), and <i>ME3</i> rs10400291C&gt;A was associated with significantly better DFS (aHR = 0.66, 95% CI = 0.46–0.95, <i>p</i> = 0.03). Regarding <i>HAX1</i> rs11265425T&gt;G, the significant association remained only in adenocarcinoma, and the association was significant only in squamous cell carcinoma regarding <i>ME3</i> rs10400291C&gt;A. ChIP-qPCR assays showed that the two variants reside in active enhancers where H3K27Ac and ATF3 binding occurs. Promoter assays showed that rs11265425 G allele had significantly higher <i>HAX1</i> promoter activity than T allele. <i>HAX1</i> RNA expression was significantly higher in tumor than in normal lung, and higher in rs11265425 TG+GG genotypes than in TT genotype. Conversely, <i>ME3</i> expression was significantly lower in tumor than in normal lung, and higher in rs10400291 AA genotype than in CC+CA genotypes. <b><i>Conclusions:</i></b> In conclusion, this study shows that the functional polymorphisms in ATF3 binding sites, <i>HAX1</i> rs11265425T&gt;G and <i>ME3</i> rs10400291C&gt;A are associated with the clinical outcomes of patients in surgically resected NSCLC.
DOI: 10.5281/zenodo.4537796
title: A standardised biologging approach to infer parturition: an application in large herbivores across the hider-follower continuum

description: Data files contain the raw data used in the manuscript. See the manuscript and https://github.com/pamarcha/infer_parturition for details
DOI: 10.5281/zenodo.4537795
title: A standardised biologging approach to infer parturition: an application in large herbivores across the hider-follower continuum

description: Data files contain the raw data used in the manuscript. See the manuscript and https://github.com/pamarcha/infer_parturition for details
DOI: 10.5281/zenodo.4559800
title: E14.5 population average, atlas, and metadata files for publication: LAMA: Automated image analysis for developmental phenotyping of mouse embryos

description: This data set is associated with the following publication: LAMA: Automated image analysis for developmental phenotyping of mouse embryos DOI:L 10.1242/dev.192955 <strong>Contents</strong> 301015_pop_avg.nrrd E14.5 population average with a voxel size of 14µm in nrrd format E14_5_atlas_v24_40.nrrd E14.5 atlas with a voxel size of 14µm in nrrd format E14_5_atlas_v24_40_4_label_info.csv Atlas metadata file lama_301015_pop_avg_cfg.toml LAMA config file for making population average lama_data_generation_031019_cfg.toml LAMA config file for registering wild type and mutant data towards population average
DOI: 10.5281/zenodo.4543202
title: E14.5 population average, atlas, and metadata files for publication: LAMA: Automated image analysis for developmental phenotyping of mouse embryos

description: This data set is associated with the following publication: LAMA: Automated image analysis for developmental phenotyping of mouse embryos DOI:L 10.1242/dev.192955 <strong>Contents</strong> 301015_pop_avg.nrrd E14.5 population average with a voxel size of 14µm in nrrd format E14_5_atlas_v24_40.nrrd E14.5 atlas with a voxel size of 14µm in nrrd format E14_5_atlas_v24_40_4_label_info.csv Atlas metadata file lama_301015_pop_avg_cfg.toml LAMA config file for making population average lama_data_generation_031019_cfg.toml LAMA config file for registering wild type and mutant data towards population average
DOI: 10.5281/zenodo.4559797
title: Simulations of 7Be via CCM SOCOL-AERv2-BEv1

description: Simulations of 7Be via CCM SOCOL-AERv2-BEv1 with nudging for 2002-2008
DOI: 10.15468/c8bye3
title: Report on deep-sea bonelliids (Echiura) from the East Equatorial Atlantic Ocean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Biseswar, Ramlall (2010): Report on deep-sea bonelliids (Echiura) from the East Equatorial Atlantic Ocean. Zoosystema 32 (1): 139-154, DOI: 10.5252/z2010n1a7, URL: http://www.bioone.org/doi/abs/10.5252/z2010n1a7
DOI: 10.5287/bodleian:dmeodxpy5
title: Data for 'Hammond and Lewis: The rotational and divergent components of atmospheric circulation on tidally locked planets, Proc. Nat. Acad. Sci., 2021'
DOI: 10.15468/ruuhmn
title: A revision of the Pontocaspian gastropods of the subfamily Caspiinae (Caenogastropoda: Hydrobiidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Anistratenko, Vitaliy V., Neubauer, Thomas A., Anistratenko, Olga Yu., Kijashko, Pavel V., Wesselingh, Frank P. (2021): A revision of the Pontocaspian gastropods of the subfamily Caspiinae (Caenogastropoda: Hydrobiidae). Zootaxa 4933 (2): 151-197, DOI: https://doi.org/10.11646/zootaxa.4933.2.1
DOI: 10.6084/m9.figshare.14102357
title: Coloured dissolved organic matter dynamics in the Great Barrier Reef by Lønborg et al.

description: Large-scale dataset of environmental variables and coloured dissolved organic matter (CDOM) obtained in the Great Barrier reef.
DOI: 10.15468/m3pqxn
title: Horned and spiky: Tegotettix derijei sp. n. (Orthoptera: Tetrigidae) is a peculiar new pygmy grasshopper species from Mindanao

description: This dataset contains the digitized treatments in Plazi based on the original journal article Patano, Romeo R., Mohagan, Alma B., Tumbrinck, Josef, Amoroso, Victor B., Skejo, Josip (2021): Horned and spiky: Tegotettix derijei sp. n. (Orthoptera: Tetrigidae) is a peculiar new pygmy grasshopper species from Mindanao. Zootaxa 4933 (2): 198-210, DOI: https://doi.org/10.11646/zootaxa.4933.2.2
DOI: 10.5281/zenodo.4559793
title: Characterization of the Kenyan Honey Bee (Apis mellifera) Gut Microbiota: A First Look at Tropical and Sub-Saharan African Bee Associated Microbiomes

description: We provide the 16S rRNA data published in the paper whose link is attached (<strong>https://doi.org/10.3390/microorganisms8111721</strong>). 86 worker honey bee guts, from 9 apiaries from 3 different geographical zones in Kenya; Western Kenya, Central Kenya and Coastal Kenya were sequenced. We sequenced the V4 region using the 515f: 5′-GTGYCAGCMGCCGCGGTAA-3′; 806r: 3′-GGACTACNVGGGTWTCTAAT-5′ primers. The primers used have not been trimmed from the raw data. We truncated both the forward and reverse reads at lengths 180 during the analysis process.
DOI: 10.5281/zenodo.4559792
title: Characterization of the Kenyan Honey Bee (Apis mellifera) Gut Microbiota: A First Look at Tropical and Sub-Saharan African Bee Associated Microbiomes

description: We provide the 16S rRNA data published in the paper whose link is attached (<strong>https://doi.org/10.3390/microorganisms8111721</strong>). 86 worker honey bee guts, from 9 apiaries from 3 different geographical zones in Kenya; Western Kenya, Central Kenya and Coastal Kenya were sequenced. We sequenced the V4 region using the 515f: 5′-GTGYCAGCMGCCGCGGTAA-3′; 806r: 3′-GGACTACNVGGGTWTCTAAT-5′ primers. The primers used have not been trimmed from the raw data. We truncated both the forward and reverse reads at lengths 180 during the analysis process.
DOI: 10.21227/91gd-2r83
title: The chronological phase and transitions data of the Failed software projects

description: The dataset contains information on 15 public failed software projects. It represents the primary behavior of a team against the failure process.