cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12199041.v1
title: Source Code from Parameter subset reduction for patient-specific modelling of arrhythmogenic cardiomyopathy-related mutation carriers in the CircAdapt model

description: Arrhythmogenic cardiomyopathy (AC) is an inherited cardiac disease, clinically characterized by life-threatening ventricular arrhythmias and progressive cardiac dysfunction. Patient-specific computational models could help understand the disease progression and may help in clinical decision-making. We propose an inverse modelling approach using the CircAdapt model to estimate patient-specific regional abnormalities in tissue properties in AC subjects. However, the number of parameters (<i>n</i> = 110) and their complex interactions make personalized parameter estimation challenging. The goal of this study is to develop a framework for parameter reduction and estimation combining Morris screening, quasi-Monte Carlo (qMC) simulations and particle swarm optimization (PSO). This framework identifies the best subset of tissue properties based on clinical measurements allowing patient-specific identification of right ventricular tissue abnormalities. We applied this framework on 15 AC genotype-positive subjects with varying degrees of myocardial disease. Cohort studies have shown that atypical regional right ventricular (RV) deformation patterns reveal an early-stage AC disease. The CircAdapt model of cardiovascular mechanics and hemodynamics already demonstrated its ability to capture typical deformation patterns of AC subjects. We, therefore, use clinically measured cardiac deformation patterns to estimate model parameters describing myocardial disease substrates underlying these AC-related RV deformation abnormalities. Morris screening reduced the subset to 48 parameters. qMC and PSO further reduced the subset to a final selection of 16 parameters, including regional tissue contractility, passive stiffness, activation delay and wall reference area.This article is part of the theme issue ‘Uncertainty Quantification in Cardiac and Cardiovascular Modelling and Simulation’.
DOI: 10.6084/m9.figshare.12199029

description: see README.md
DOI: 10.6084/m9.figshare.12199029.v1
title: Epigenetics_processing.zip

description: see README.md
DOI: 10.6084/m9.figshare.12198984.v1
title: Phenotype_processing.zip

description: see README.md
DOI: 10.6084/m9.figshare.12198969.v1
title: Genomics_processing.zip

description: see README.md
DOI: 10.6084/m9.figshare.12198828
title: Additional file 1 of Noninvasive oxygenation strategies in adult patients with acute respiratory failure: a protocol for a systematic review and network meta-analysis

description: Additional file 1. NMA-CRFRI.
DOI: 10.6084/m9.figshare.12198828.v1
title: Additional file 1 of Noninvasive oxygenation strategies in adult patients with acute respiratory failure: a protocol for a systematic review and network meta-analysis

description: Additional file 1. NMA-CRFRI.
DOI: 10.25345/c54j3d
title: MassIVE MSV000086010 - Electroblotting through a tryptic membrane for LC-MS/MS analysis of proteins separated in electrophoretic gels
title: Electroblotting proteins separated by SDS-PAGE through a trypsin-containing membrane and onto a capture membrane simplifies extraction and digestion of proteins. Subsequent liquid chromatography-tandem mass spectrometry (LC-MS/MS) identifies the extracted peptides.
DOI: 10.6084/m9.figshare.12198768
title: Additional file 24 of Pattern and timing of diversification in the African freshwater fish genus Distichodus (Characiformes: Distichodontidae)

description: Additional file 24: Table S3. Probabilities of ancestral states/ranges at each node of the spatiotemporal reconstruction of Distichodus range evolution presented in Fig. S21. Same contextual information as in Table S1.
DOI: 10.6084/m9.figshare.12198762
title: Additional file 23 of Pattern and timing of diversification in the African freshwater fish genus Distichodus (Characiformes: Distichodontidae)

description: Additional file 23: Table S2. Probabilities of ancestral states/ranges at each node of the spatiotemporal reconstruction of Distichodus range evolution presented in Fig. S20. Same contextual information as in Table S1.
DOI: 10.6084/m9.figshare.12198768.v1
title: Additional file 24 of Pattern and timing of diversification in the African freshwater fish genus Distichodus (Characiformes: Distichodontidae)

description: Additional file 24: Table S3. Probabilities of ancestral states/ranges at each node of the spatiotemporal reconstruction of Distichodus range evolution presented in Fig. S21. Same contextual information as in Table S1.
DOI: 10.6084/m9.figshare.12198759
title: Additional file 22 of Pattern and timing of diversification in the African freshwater fish genus Distichodus (Characiformes: Distichodontidae)

description: Additional file 22: Table S1. Probabilities of ancestral states/ranges at each node of the spatiotemporal reconstruction of Distichodus range evolution presented in Fig. 7. Columns indicate ancestral areas, represented by all unique combinations for all possible group sizes for the six ichthyofaunal provinces. Rows indicate nodes, with numbering following the typical R phylo format, i.e., 1 is the first tip taxon/area, beginning at the bottom. After the last tip value, the numbering begins at the root, and moves tipward. Ichthyofaunal provinces abbreviated as in Fig. 1.
DOI: 10.6084/m9.figshare.12198759.v1
title: Additional file 22 of Pattern and timing of diversification in the African freshwater fish genus Distichodus (Characiformes: Distichodontidae)

description: Additional file 22: Table S1. Probabilities of ancestral states/ranges at each node of the spatiotemporal reconstruction of Distichodus range evolution presented in Fig. 7. Columns indicate ancestral areas, represented by all unique combinations for all possible group sizes for the six ichthyofaunal provinces. Rows indicate nodes, with numbering following the typical R phylo format, i.e., 1 is the first tip taxon/area, beginning at the bottom. After the last tip value, the numbering begins at the root, and moves tipward. Ichthyofaunal provinces abbreviated as in Fig. 1.
DOI: 10.6084/m9.figshare.12198762.v1
title: Additional file 23 of Pattern and timing of diversification in the African freshwater fish genus Distichodus (Characiformes: Distichodontidae)

description: Additional file 23: Table S2. Probabilities of ancestral states/ranges at each node of the spatiotemporal reconstruction of Distichodus range evolution presented in Fig. S20. Same contextual information as in Table S1.
DOI: 10.6084/m9.figshare.12198702
title: Additional file 1 of Pegylated liposomal doxorubicin in patients with metastatic triple-negative breast cancer: 8-year experience of a single center

description: Additional file 1.
DOI: 10.6084/m9.figshare.12198702.v1
title: Additional file 1 of Pegylated liposomal doxorubicin in patients with metastatic triple-negative breast cancer: 8-year experience of a single center

description: Additional file 1.
DOI: 10.6084/m9.figshare.12198618
title: Additional supporting information for Paleomagnetism of the Late Cretaceous red beds from the far western Lhasa terrane: Inclination discrepancy and tectonic implications

description: This supporting information contains further illustrations of cross section for the field sampling (Figure S1), stepwise unfolding of the mean directions after syntectonic-sedimentation-correction from 54 sites (Figure S2), isothermal remanent magnetization (IRM) component analysis for the representative samples (Table S1), characteristic remanent magnetization (ChRM) directions for the Jingzhushan Formation red beds (Table S2), and summary of the available Cretaceous paleomagnetic results from the Lhasa terrane (LT) (Table S3).
DOI: 10.6084/m9.figshare.12198627
title: Citrus_reticulata_Blanco-Unigene.5-3.fa

description: The transcriptome of pistil and pollen in 'Wuzishatangju' (Citrus reticulata L.)
DOI: 10.6084/m9.figshare.12198627.v1
title: Citrus_reticulata_Blanco-Unigene.5-3.fa

description: The transcriptome of pistil and pollen in 'Wuzishatangju' (Citrus reticulata L.)
DOI: 10.6084/m9.figshare.12198618.v1
title: Additional supporting information for Paleomagnetism of the Late Cretaceous red beds from the far western Lhasa terrane: Inclination discrepancy and tectonic implications

description: This supporting information contains further illustrations of cross section for the field sampling (Figure S1), stepwise unfolding of the mean directions after syntectonic-sedimentation-correction from 54 sites (Figure S2), isothermal remanent magnetization (IRM) component analysis for the representative samples (Table S1), characteristic remanent magnetization (ChRM) directions for the Jingzhushan Formation red beds (Table S2), and summary of the available Cretaceous paleomagnetic results from the Lhasa terrane (LT) (Table S3).
DOI: 10.6084/m9.figshare.12198594
title: Raw data of The effect of Liu-zi-jue for the patients with 2019 Novel Coronavirus Pneumonia (COVID-19) .rar

description: his is the data of our clinical trial of the traditional Chinese exercise Liu-zi-jue for the respiratory symptoms and physical and mental health evaluation of patients with mild COVID-19, including the basic information of the patients and the original data of the score
DOI: 10.6084/m9.figshare.12198594.v1
title: Raw data of The effect of Liu-zi-jue for the patients with 2019 Novel Coronavirus Pneumonia (COVID-19) .rar

description: his is the data of our clinical trial of the traditional Chinese exercise Liu-zi-jue for the respiratory symptoms and physical and mental health evaluation of patients with mild COVID-19, including the basic information of the patients and the original data of the score
DOI: 10.6084/m9.figshare.12198498
title: Databank Metabolic and Oxidative stress Markers in a Postmenopausal rat model of PCOS

description: pdf version of prism databank
DOI: 10.6084/m9.figshare.12198498.v1
title: Databank Metabolic and Oxidative stress Markers in a Postmenopausal rat model of PCOS

description: pdf version of prism databank
DOI: 10.6084/m9.figshare.12198489
title: Biobank resampled template

description: Template from biobank data. Resampled to 192x224x192.
DOI: 10.6084/m9.figshare.12198486
title: Biogeosci17_Kobari.zip

description: These files are data sets for Kobari et al. (2020: Biogeosciences, 17, 1-12).
DOI: 10.6084/m9.figshare.12198489.v1
title: Biobank resampled template

description: Template from biobank data. Resampled to 192x224x192.
DOI: 10.6084/m9.figshare.12198465
title: PLOS ONE.xlsx

description: Subject characteristics including age, height, weight, and years of experience was collected at the start of the study. The hours and days of basketball training and games were collected for each individual and combined in each group. In both groups, the team captain managed and recorded the occurrence of ankle sprain and practice days and times in each team
DOI: 10.6084/m9.figshare.12198486.v1
title: Biogeosci17_Kobari.zip

description: These files are data sets for Kobari et al. (2020: Biogeosciences, 17, 1-12).
DOI: 10.6084/m9.figshare.12198465.v2
title: PLOS ONE.xlsx

description: Subject characteristics including age, height, weight, and years of experience was collected at the start of the study. The hours and days of basketball training and games were collected for each individual and combined in each group. In both groups, the team captain managed and recorded the occurrence of ankle sprain and practice days and times in each team
DOI: 10.6084/m9.figshare.12198465.v1
title: PLOS ONE.xlsx

description: Subject characteristics including age, height, weight, and years of experience was collected at the start of the study. The hours and days of basketball training and games were collected for each individual and combined in each group. In both groups, the team captain managed and recorded the occurrence of ankle sprain and practice days and times in each team
DOI: 10.6084/m9.figshare.12198378
title: Metadata

description: This metadata file contains the information linking each "omic" data type including bacterial cytological profiling, RNA sequencing, and exo-metabolomics measurements (both HPLC and LC/MS) for <i>S. aureus</i> HA-MRSA strain D592 cultured in a bacteriologic media (CA-MHB) and a physiologic media (RPMI+10%LB) and exposed to various concentrations of nafcillin.
DOI: 10.6084/m9.figshare.12198378.v1
title: Metadata

description: This metadata file contains the information linking each "omic" data type including bacterial cytological profiling, RNA sequencing, and exo-metabolomics measurements (both HPLC and LC/MS) for <i>S. aureus</i> HA-MRSA strain D592 cultured in a bacteriologic media (CA-MHB) and a physiologic media (RPMI+10%LB) and exposed to various concentrations of nafcillin.
DOI: 10.6084/m9.figshare.12198009
title: Perception of clinical trials among general population in Mauritius

description: Contains the data related to perception, awareness and knowledge of CT among the general Mauritian population <br>
DOI: 10.6084/m9.figshare.12197991
title: Koutsidi_Moukas_Tzanatos_Table_S2.xlsx

description: Supplementary material _Table S2 The competition between 205 species of Mediterranean nekton examined, specifically regarding: (a) habitat use, (b) food resources of adult/mature stages, (c) spawning habitat use. Also, in this table combinations of traits by resource that are not in use from any of the 205 species analysed, are indicated (empty/possibly available niches) The excel file has 3 worksheets: (1) habitat_use: This worksheet contains the 205 species examined, sorted by the modalities of the traits (optimal depth, habitat type, seabed type) relevant to habitat use. The trait depth range, appearing at the table (characterizing a species as eurybathic or stenobathic) for habitat use, was added, not to describe resource use, but to indicate the intensity of potential competition. (2) adult_food: This worksheet contains the 205 species examined, sorted by the modalities of the traits (maximum length, trophic level, feeding type, diet) relevant to the use of food resources by mature fish. (3) spawning_habitat: This worksheet contains the 205 species examined, sorted by the modalities of the traits (spawning period, spawning habitat) relevant to spawning habitat use<br>
DOI: 10.6084/m9.figshare.12197979
title: Thermokarst stimulates stable carbon decomposition by altering microbial functional genes

description: The metagenomic sequencing data measured from thermokarst area in the Tibetan Plateau<br>
DOI: 10.6084/m9.figshare.12198009.v1
title: Perception of clinical trials among general population in Mauritius

description: Contains the data related to perception, awareness and knowledge of CT among the general Mauritian population <br>
DOI: 10.6084/m9.figshare.12197979.v1
title: Thermokarst stimulates stable carbon decomposition by altering microbial functional genes

description: The metagenomic sequencing data measured from thermokarst area in the Tibetan Plateau<br>
DOI: 10.6084/m9.figshare.12197964
title: A new species of Hemiphyllodactylus Bleeker, 1860 (Reptilia: Squamata) from Hunan Province, China

description: Supplementary table of the manuscript "A new species of Hemiphyllodactylus Bleeker, 1860 (Reptilia: Squamata) from Hunan Province, China"
DOI: 10.6084/m9.figshare.12197922
title: Brown-headed Cowbird Sex Ratio Data from 2007-2013

description: This is the data set used to generate the results and figures in Louder et al. J Avian Biology (in revision)
DOI: 10.6084/m9.figshare.12197964.v1
title: A new species of Hemiphyllodactylus Bleeker, 1860 (Reptilia: Squamata) from Hunan Province, China

description: Supplementary table of the manuscript "A new species of Hemiphyllodactylus Bleeker, 1860 (Reptilia: Squamata) from Hunan Province, China"
DOI: 10.6084/m9.figshare.12197922.v1
title: Brown-headed Cowbird Sex Ratio Data from 2007-2013

description: This is the data set used to generate the results and figures in Louder et al. J Avian Biology (in revision)
DOI: 10.6084/m9.figshare.12197745
title: hysicochemical and sensory properties of terasi, an Indonesian fermented shrimp (Acetes japonicus) paste inoculated with Lactobacillus plantarum SB7 and Bacillus amyloliquefaciens BC9

description: The data about proximate, amino acid and organoleptic data
DOI: 10.6084/m9.figshare.12197745.v1
title: hysicochemical and sensory properties of terasi, an Indonesian fermented shrimp (Acetes japonicus) paste inoculated with Lactobacillus plantarum SB7 and Bacillus amyloliquefaciens BC9

description: The data about proximate, amino acid and organoleptic data
DOI: 10.25375/uct.12197721
title: Anthropogenic movement results in hybridisation in impala in southern Africa - Supplementary Material

description: Supplementary material to accompany the scientific publication: "Anthropogenic movement results in hybridisation in impala in southern Africa" which can be found here:https://doi.org/10.1007/s10592-020-01276-4<br><br>Abstract: 'Hybridisation caused by anthropogenic movements of animals is a conservation concern. Black-faced impala (Aepyceros melampus petersi) are endemic to north-western Namibia and south-western Angola and are geographically isolated from common impala (A. m. melampus). Common impala have been translocated into the black-faced impala range creating a hybridisation risk. We validated 13 microsatellite markers for the detection of recent hybridisation events. We used these markers to assess the genetic variation and differentiation among impala within Etosha National Park (NP), Southern Cross Private Game Reserve (SCPGR), Namibia, and private game ranches across South Africa. We confirmed that “black-nosed” impala in South Africa were A. m. melampus, thus providing more evidence that the black blaze on the face cannot be used to distinguish between the two subspecies. We detected four hybrids and one common impala on SCPGR. These five individuals were removed from SCPGR at time of sampling. We found two potential hybrids in southern Etosha NP. Further sampling of animals within Etosha NP is recommended to determine the extent of hybridisation within the park. The Namibian Ministry of the Environment & Tourism is developing a management plan for black-faced impala across Namibia that includes genetic testing for hybrids.'<br>
DOI: 10.25375/uct.12197721.v2
title: Anthropogenic movement results in hybridisation in impala in southern Africa - Supplementary Material

description: Supplementary material to accompany the scientific publication: "Anthropogenic movement results in hybridisation in impala in southern Africa" which can be found here:https://doi.org/10.1007/s10592-020-01276-4
DOI: 10.26180/5ea7d9b786c4e
title: 18s_SSU identified sample library

description: This is the identified sample library containing little penguin faecal samples with numbers of sequence reads for each taxon identified.
DOI: 10.26180/5ea7e6e8df9b3
title: 16s_Fish identified sample library

description: This is the identified sample library containing little penguin faecal samples with numbers of sequence reads for each fish species identified.
DOI: 10.26180/5ea7da58da29f
title: Automated Penguin Monitoring System_weighbridge data

description: Foraging trip data for the duration of the project. Foraging trip effort and foraging success can be calculated from this data.
DOI: 10.6084/m9.figshare.12197604
title: Exposure to nectar-realistic sugar concentrations negatively impacts the ability of the trypanosome parasite (Crithidia bombi) to infect its bumblebee host

description: Raw data for crithidia bombi prevalence and intensity in Bombus terrestris workers.
DOI: 10.6084/m9.figshare.12197604.v1
title: Exposure to nectar-realistic sugar concentrations negatively impacts the ability of the trypanosome parasite (Crithidia bombi) to infect its bumblebee host

description: Raw data for crithidia bombi prevalence and intensity in Bombus terrestris workers.
DOI: 10.26180/5ea7dbaa1c190
title: Little penguin scat collection dates

description: Dates of scat collection for use when syncing diet and weighbridge (APMS) data
DOI: 10.6084/m9.figshare.12197544
title: Genome sequence of Kobresia littledalei, the first chromosome-level genome in the family Cyperaceae

description: Kobresia_littledalei_repeat.gff:Repeat annotation of Kobresia littledalei.Kobresia_littledalei_GO.txtGO annotations for identified genes in <i>Kobresia littledalei</i>.Kobresia_littledalei_Swissprot.txtSwissprot annotations for for identified genes in<i>Kobresia littledalei</i>.Kobresia_littledalei_Interpro.txt<br>Interpro annotations for for identified genes in<i>Kobresia littledalei</i>.Kobresia_littledalei_KEGG.txtKEGG annotations for for identified genes in<i>Kobresia littledalei</i>.Kobresia_littledalei_NR.txt<br>NR annotations for for identified genes in<i>Kobresia littledalei</i>.Kobresia_littledalei_pfam.txtPfam annotations for for identified genes in<i>Kobresia littledalei</i>.Kobresia_littledalei_Orthogroups_SingleCopyOrthologues_genelist.txtSingle-copy gene list in each species.Kobresia_littledalei_single-copy.pep.phySuper matrix of aligned single-copy genes.Kobresia_littledalei_divtree.newickPhylogenetic relationships of the ten selected species: <i>Kobresia littledalei</i>, <i>Brachypodium distachyon</i>, <i>Orayza sativa</i>, <i>Zea mays</i>, <i>Sorghum bicolor</i>, <i>A</i><i>nanas</i><i> comosus</i>, <i>Elaeis guineensis</i>, <i>Musa acuminata,</i> <i>Phyllostachys heterocycla</i> and <i>Arabidopsis thaliana.</i><br>
DOI: 10.6084/m9.figshare.12197370
title: Additional file 1 of Vacuolar ATPase depletion contributes to dysregulation of endocytosis in bloodstream forms of Trypanosoma brucei

description: Additional file 1: Table S1. Primers used for PCR in this study.
DOI: 10.6084/m9.figshare.12197370.v1
title: Additional file 1 of Vacuolar ATPase depletion contributes to dysregulation of endocytosis in bloodstream forms of Trypanosoma brucei

description: Additional file 1: Table S1. Primers used for PCR in this study.
DOI: 10.6084/m9.figshare.12197334
title: Additional file 4 of The effectiveness and complexity of interventions targeting sedentary behaviour across the lifespan: a systematic review and meta-analysis

description: Additional file 4. Supplement D. Meta-Analysis and GRADE Assessment
DOI: 10.6084/m9.figshare.12197334.v1
title: Additional file 4 of The effectiveness and complexity of interventions targeting sedentary behaviour across the lifespan: a systematic review and meta-analysis

description: Additional file 4. Supplement D. Meta-Analysis and GRADE Assessment
DOI: 10.6084/m9.figshare.12197295
title: Additional file 1 of Acupuncture or auricular electro-acupuncture as adjuncts to lifestyle interventions for weight management in PCOS: protocol for a randomised controlled feasibility study

description: Additional file 1. Acupuncture for PCOS protocol R1. SPIRIT FigureR1.
DOI: 10.6084/m9.figshare.12197289
title: Additional file 9 of Dispensations of benzodiazepines, z-hypnotics, and gabapentinoids to patients receiving opioid agonist therapy; a prospective cohort study in Norway from 2013 to 2017

description: Additional file 9. Changes in the mean daily doses of gabapentinoids among patients who discontinued OAT. Legends: CI = Confidence interval, df = degree of freedom, and OAT = opioid agonist therapy. 1) Paired samples t-test, df = 25, comparing mean daily dose ≥0 - ≤90 days to baseline related to discontinuation. 2) Paired samples t-test, df = 6, comparing mean daily dose ≥0 - ≤90 days to baseline related to discontinuation. 3) Paired samples t-test, df = 6, comparing mean daily dose ≥0 - ≤90 days to ≥90 -
DOI: 10.6084/m9.figshare.12197295.v1
title: Additional file 1 of Acupuncture or auricular electro-acupuncture as adjuncts to lifestyle interventions for weight management in PCOS: protocol for a randomised controlled feasibility study

description: Additional file 1. Acupuncture for PCOS protocol R1. SPIRIT FigureR1.