cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.52fe4w
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tulbaghia violacea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 147 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007533-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24416/uu01-syzjpg
title: Questioning the Conversion Paradox: Gender, Sexuality, and Belonging amongst Women Becoming Jewish, Christian, and Muslim in the Netherlands

description: This dataset contains the anonymized of my PhD research about Dutch women who converted to Judaism, Christianity or Islam, which resulted in the PhD dissertation 'Questioning the Conversion Paradox: Gender, Sexuality, and Belonging amongst Women Becoming Jewish, Christian, and Muslim in the Netherlands.' The research explores the intersections of gender and religion in the process of conversion and in female converts' everyday religious practice. In order to investigate this question in the three groups comparatively, qualitative research methods were employed: participant observation and (in-depth) semi-structured interviews. In different (Modern Orthodox and Liberal/Progressive) Jewish, (Pentecostal) Christian and (Sunni) Islamic communities, data was collected via participant observation and informal conversations. Semi-structured in-depth interviews were undertaken with forty participants. These participants identified with the notion of 'conversion' (or localised terminology such as 'giyur' for the Jewish case), meaning that they were socialised in a largely secular environment and decided to undertake to become Jewish, Christian or Muslim later in life. In addition, I interviewed nine religious leaders of the communities studied. The twenty Jewish and seven Muslim interlocutors were white; ten Christian interlocutors were white, three were people of colour. The socio-economic background of the participants varied, so did their age (ranging from 20 to 72 years old at the time of research). The majority identified as heterosexual, two identified as lesbian and one as queer. Whilst some had joined their religion forty years ago, others had only recently converted or were in the process when we met. All interviewed people signed a consent form. These interviews were recorded, transcribed and analysed using NVivo software (version 12, 2018). The PhD research was a subproject of the NWO project 'Beyond 'Religion versus Emancipation': Gender and Sexuality in Women’s Conversions to Judaism, Christianity, and Islam in Contemporary Western Europe.' This project was led by prof. dr. Anne-Marie Korte and hosted at the Department of Philosophy and Religious Studies, Faculty of Humanities, UU. The PhD was a joint doctorate with the Centre for Research on Culture and Gender, Ghent University. Other supervisors were: dr. Katja Rakow (UU) prof. dr. Chia Longman (UGent) The dissertation can be found here: https://dspace.library.uu.nl/handle/1874/421532 Other publications include: Journal articles, DOI: 10.1080/14755610.2018.1444655 and 10.1177/0037768620901664 Book publications, ISBN: 9780367407285 and 9780367649555
DOI: 10.24416/uu01-t1ay2r
title: Formation of platform co-ops in the European gig economy

description: This database is compiled as part of my PhD project on the challenges that gig workers face when organising themselves in a worker-owned and worker-governed cooperative enterprise. The research project aims to provide insight into the viability and competitive (dis)advantages of platform cooperatives as one institutional approach for organising decent work in the gig economy by analysing the conditions under which cooperatives of gig workers can become resilient. To answer a sub-question, I used semi-structured interviews. The explorative design of this study allowed me to investigate the tensions that platform co-ops face from competing demands during their formation, and how founders manage these tensions. I used an interview protocol with ten basic questions, and some guidelines for asking further questions. First, I listed the self-described platform co-ops in the European gig economy from a directory by Internet of Ownership (https://ioo.coop/directory/). All cases that had their contact information available were contacted, and with additional snowballing 15 out of 48 identified cases accepted an interview. This includes also 4 cases that failed during formation or had to make a restart: Faircab, FoodFairies, Smart Hungary, and Smart NL. Geographically the cases are concentrated in Western-Europe, most prominently in France, Belgium, the United Kingdom, Germany, and to a lesser extent also in Spain and Italy. In all cases one or two founders could be identified, resulting in a total of 16 interviews. All interviews were transcribed verbatim and personal names were removed from the files. Analysis was assisted by NVivo 12 for open and axial coding, after which selective coding was conducted more manually while writing the findings and comparing with the paradox perspective literature.
DOI: 10.15468/dl.2hwmp9
title: Occurrence Download

description: A dataset containing 745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Atriplex patens"
 ]
}

 The dataset includes 745 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007536-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24416/uu01-if8se0
title: Cooperation Through Rational Investments in Social Organization

description: Repeated interactions and contractual agreements are examples of different ways of organizing interactions in social and economic life and can foster cooperation in social dilemmas. Thus, when involved in social dilemmas, actors have incentives to form long-term relations with repeated interactions or to enter into contractual agreements. We analyze theoretically and experimentally the effects of repeated interactions and contractual agreements as well as their endogenous emergence. In line with earlier evidence, both ways of organizing interactions are found to foster cooperation. Our key contribution is twofold. First, with respect to theory, we derive conditions for investments in social organization. Second, empirically, we find that such investments are more likely when the costs are below a threshold that follows from a parsimonious game-theoretic model assuming equilibrium behavior, self-regarding preferences, and complete information. We find less experimental support for two additional conjectures on investments that are based on reasoning more in line with behavioral game theory.
DOI: 10.24416/uu01-px5q49
title: Cooperation Through Rational Investments in Social Organization

description: Repeated interactions and contractual agreements are examples of different ways of organizing interactions in social and economic life and can foster cooperation in social dilemmas. Thus, when involved in social dilemmas, actors have incentives to form long-term relations with repeated interactions or to enter into contractual agreements. We analyze theoretically and experimentally the effects of repeated interactions and contractual agreements as well as their endogenous emergence. In line with earlier evidence, both ways of organizing interactions are found to foster cooperation. Our key contribution is twofold. First, with respect to theory, we derive conditions for investments in social organization. Second, empirically, we find that such investments are more likely when the costs are below a threshold that follows from a parsimonious game-theoretic model assuming equilibrium behavior, self-regarding preferences, and complete information. We find less experimental support for two additional conjectures on investments that are based on reasoning more in line with behavioral game theory.
DOI: 10.24416/uu01-o61i4z
title: Cooperation Through Rational Investments in Social Organization

description: Repeated interactions and contractual agreements are examples of different ways of organizing interactions in social and economic life and can foster cooperation in social dilemmas. Thus, when involved in social dilemmas, actors have incentives to form long-term relations with repeated interactions or to enter into contractual agreements. We analyze theoretically and experimentally the effects of repeated interactions and contractual agreements as well as their endogenous emergence. In line with earlier evidence, both ways of organizing interactions are found to foster cooperation. Our key contribution is twofold. First, with respect to theory, we derive conditions for investments in social organization. Second, empirically, we find that such investments are more likely when the costs are below a threshold that follows from a parsimonious game-theoretic model assuming equilibrium behavior, self-regarding preferences, and complete information. We find less experimental support for two additional conjectures on investments that are based on reasoning more in line with behavioral game theory.
DOI: 10.15468/dl.8fqdgc
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023999-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mu4vdb
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002084-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3vhs7g
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000895-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zn928
title: Occurrence Download

description: A dataset containing 238926876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 238926876 records from 6049 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004665-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybj5gs
title: Occurrence Download

description: A dataset containing 630 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pedaliodes peucestas (Hewitson, 1861)"
 ]
}

 The dataset includes 630 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006849-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/46970
title: Chandra X-ray Observatory ObsId 46970
DOI: 10.15468/dl.us3kre
title: Occurrence Download

description: A dataset containing 6257 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ludwigia hyssopifolia"
 ]
}

 The dataset includes 6257 records from 310 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034368-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16368065
title: Disruption of H3K4me3-Lactate Axis in Obese Macrophages Impairs Efferocytosis and Wound Repair

description: Disruption of H3K4me3-Lactate Axis in Obese Macrophages Impairs Efferocytosis and Wound Repair

 

Tables (total 5).

Table1_DP_ND_hypoxia-induced_H3K4me3

Table2_ND_hypo-induced_MsigDB

Table3_RNA-PLX145991_volcano_plot_v2_Low_Fat_Diet_1h_vs_Low_Fat_Diet_Basal

Table4_RNA-PLX145991_volcano_plot_v2_High_Fat_Diet_1h_vs_High_Fat_Diet_Basal

Table5_Science_Batie_peaklist

Shared via

https://doi.org/10.5281/zenodo.16368066
DOI: 10.5281/zenodo.16368066
title: Disruption of H3K4me3-Lactate Axis in Obese Macrophages Impairs Efferocytosis and Wound Repair

description: Disruption of H3K4me3-Lactate Axis in Obese Macrophages Impairs Efferocytosis and Wound Repair

 

Tables (total 5).

Table1_DP_ND_hypoxia-induced_H3K4me3

Table2_ND_hypo-induced_MsigDB

Table3_RNA-PLX145991_volcano_plot_v2_Low_Fat_Diet_1h_vs_Low_Fat_Diet_Basal

Table4_RNA-PLX145991_volcano_plot_v2_High_Fat_Diet_1h_vs_High_Fat_Diet_Basal

Table5_Science_Batie_peaklist

Shared via

https://doi.org/10.5281/zenodo.16368066
DOI: 10.15468/dl.vzavv9
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Secale cereale",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034372-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cf8hmu
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Secale cereale",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 162 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034373-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bjzec
title: Occurrence Download

description: A dataset containing 19187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Fagus crenata"
 ]
}

 The dataset includes 19187 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034371-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wf45z
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Secale cereale",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034374-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14226615
title: Molecular and spatial analysis of ganglion cells on retinal flatmounts identifies perivascular neurons resilient to glaucoma

description: Summary:

Processed datasets from applying MERFISH spatial transcriptomics to wholemount retina. Raw imaging data will be hosted at a separate link.

Uploaded Data:

Anndata objects

1.merged_control.h5adRRaw concatenated cell by gene matrices across many retinae

2. merged_control_cluster_final_mapped.h5adFinal preprocessed cell by gene matrix.

3. RGC_control_mapped.h5adRGC only preprocessed matrix (a subset of the dataset above)

4. Melanopsin_runs.h5ad

Processed RGC matrix of MERFISH runs with Melanopsin antibody staining (Cellbound3 column in adata.obs)

Additional supplementary data

5. column_info.txtDescription of metadata in columns of .h5ad files. The most important columns are: 'final_x', 'final_y' (spatial coordinates of cells), 'run' (Retina ID), 'region' (Tissue section ID), 'class' (Cell class), 'final_assignment': (Cell type assignment).

6. Spline_coordinates.jsonSplines for the outline of each retina used in certain figures (e.g. Figure S6)

7. Exclusion_areas.zipFor Figure S7 (mosaic analysis). Contains json files, one for each ROI, containing polygons for ROI bounds as well as outlining major holes.

8. Column_mapping.csv and distances.csv

Used for all SOHU and control perivascular statistics (Figure 5,6,S6)
DOI: 10.5281/zenodo.16342107
title: Molecular and spatial analysis of ganglion cells on retinal flatmounts identifies perivascular neurons resilient to glaucoma

description: Summary:

Processed datasets from applying MERFISH spatial transcriptomics to wholemount retina. Raw imaging data will be hosted at a separate link.

Uploaded Data:

Anndata objects

1.merged_control.h5adRRaw concatenated cell by gene matrices across many retinae

2. merged_control_cluster_final_mapped.h5adFinal preprocessed cell by gene matrix.

3. RGC_control_mapped.h5adRGC only preprocessed matrix (a subset of the dataset above)

4. Melanopsin_runs.h5ad

Processed RGC matrix of MERFISH runs with Melanopsin antibody staining (Cellbound3 column in adata.obs)

Additional supplementary data

5. column_info.txtDescription of metadata in columns of .h5ad files. The most important columns are: 'final_x', 'final_y' (spatial coordinates of cells), 'run' (Retina ID), 'region' (Tissue section ID), 'class' (Cell class), 'final_assignment': (Cell type assignment).

6. Spline_coordinates.jsonSplines for the outline of each retina used in certain figures (e.g. Figure S6)

7. Exclusion_areas.zipFor Figure S7 (mosaic analysis). Contains json files, one for each ROI, containing polygons for ROI bounds as well as outlining major holes.

8. Column_mapping.csv and distances.csv

Used for all SOHU and control perivascular statistics (Figure 5,6,S6)
DOI: 10.15468/dl.sd5q2k
title: Occurrence Download

description: A dataset containing 739 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-118 44,-101 44,-101 55,-118 55,-118 44))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Castilleja miniata"
 ]
}

 The dataset includes 739 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034380-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xf6baf
title: Occurrence Download

description: A dataset containing 1303 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monticalia ledifolia"
 ]
}

 The dataset includes 1303 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034376-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azmfut
title: Occurrence Download

description: A dataset containing 124793 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elymus sibiricus, Eriobotrya japonica, Hordeum brevisubulatum, Hovenia dulcis, Ilex pernyi, Ipomoea aquatica, Iris bulleyana, Kummerowia striata, Ligustrum compactum, Livistona chinensis, Lonicera hispida, Lonicera trichosantha, Loropetalum chinense, Malus, Medicago polymorpha, Momordica charantia, Morella rubra, Omphalogramma vinciflorum, Oyama wilsonii, Paulownia fortunei, Phyllostachys nigra henonis, Pinus yunnanensis, Pittosporum glabratum, Primula dryadifolia, Primula munroi yargongensis, Prunus padus, Prunus sibirica, Pyracantha loureiroi, Pyrus communis, Rhododendron adenogynum, Rhododendron decorum, Rhododendron forrestii, Rhododendron heliolepis, Rhododendron sphaeroblastum, Rhododendron stewartianum, Solanum dulcamara, Sorbus vilmorinii, Spodiopogon sibiricus, Stachys sieboldii, Stipa baicalensis, Syringa sweginzowii, Viburnum setigerum, Vigna mungo, Zoysia matrella, Abies delavayi, Aesculus chinensis wilsonii, Amaranthus cruentus, Anemone demissa, Argentina lineata, Argentina stenophylla, Arundinella hirta, Berberis julianae, Bothriochloa ischaemum, Camellia pitardii, Camphora officinarum, Canavalia ensiformis, Carpinus turczaninovii, Castanopsis sclerophylla, Chaenomeles cathayensis, Clematis armandii, Corallodiscus lanuginosus, Corylus sieboldiana, Cotoneaster multiflorus, Cunninghamia lanceolata, Cupressus funebris, Delphinium likiangense, Elaeagnus angustifolia, Eleutherococcus senticosus, Elymus ciliaris, Enkianthus deflexus, Eragrostis pilosa, Eremochloa ophiuroides, Eriochloa villosa, Fagopyrum tataricum, Gardenia jasminoides, Hydrangea bretschneideri, Ilex cornuta, Ilex rotunda, Incarvillea lutea, Incarvillea mairei grandiflora, Incarvillea sinensis, Iris wilsonii, Koelreuteria paniculata, Lagerstroemia indica, Lilium concolor, Lilium stewartianum, Liquidambar formosana, Liriodendron chinense, Lycoris aurea, Malus halliana, Medicago ruthenica, Melilotus officinalis, Notholirion bulbuliferum, Phaseolus coccineus, Phyllostachys nigra, Polyspora axillaris, Primula blinii, Primula pulchella, Prinsepia sinensis, Prunus maackii)",
 "Country is United States of America",
 "Year is greater than or equal to 1898",
 "Year is less than or equal to 2024",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation, Specimen, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 124793 records from 283 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034356-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15835527
title: weakly dataset and Modified dataset with pseudo-labeling in different thresholds

description: Descriptions are in https://github.com/beheshtiniya/pseudo-labeling-confidence-thresholds-tree-species-identification
DOI: 10.5281/zenodo.15835528
title: weakly dataset and Modified dataset with pseudo-labeling in different thresholds

description: Descriptions are in https://github.com/beheshtiniya/pseudo-labeling-confidence-thresholds-tree-species-identification
DOI: 10.15468/dl.88fpj3
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eichhornia crassipes",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 198 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034378-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.