cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.ff10n
title: Data from: Time-limited environments affect the evolution of egg - body size allometry

description: Initial offspring size is a fundamental component of absolute growth rate,
 where large offspring will reach a given adult body size faster than
 smaller offspring. Yet, our knowledge regarding the co-evolution between
 offspring and adult size is limited. In time-constrained environments,
 organisms need to reproduce at a high rate and reach a reproductive size
 quickly. In order to rapidly attain a large adult body size, we
 hypothesize that, in seasonal habitats, large species are bound to having
 a large initial size, and consequently, the evolution of egg size will be
 tightly matched to that of body size, compared to less time-limited
 systems. We tested this hypothesis in killifishes, and found a
 significantly steeper allometric relationship between egg size and body
 size in annual, compared to non-annual species. We also found higher rates
 of evolution of egg and body size in annual compared to non-annual
 species. Our results suggest that time-constrained environments impose
 strong selection on rapidly reaching a species-specific body size, and
 reproduce at a high rate, which in turn imposes constraints on the
 evolution of egg sizes. In combination, these distinct selection pressures
 result in different relationships between egg and body size among species
 in time-constrained versus permanent habitats.
description: Allometry and
 ANOVAsR script for the
 Bayesian phylogenetic mixed models of allometry and mean differences in
 egg size and body sizeAllometry_and_ANOVAs.RKillidata - egg size and body sizeData on egg size and body size from the killifish database KilliData used in the analysesKillidata.xlsRate of evolutionR script for the analysis of the rate of evolution of body size and egg sizeRate_of_evolution.RReproductive rateR script for the analysis of reproductive ratesReproductive_rate.RReproductive rate dataReproductive rates (in number of eggs per month) used in the analysisReproductive_rate.xls
DOI: 10.15468/dl.7cmykd
title: Occurrence Download

description: A dataset containing 463 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Montinia caryophyllacea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 463 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000803-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.k72dj
title: Data from: Marine Phytophthora species can hamper conservation and restoration of vegetated coastal ecosystems

description: Phytophthora species are potent pathogens that can devastate terrestrial
 plants, causing billions of dollars of damage yearly to agricultural crops
 and harming fragile ecosystems worldwide. Yet, virtually nothing is known
 about the distribution and pathogenicity of their marine relatives. This
 is surprising, as marine plants form vital habitats in coastal zones
 worldwide (i.e. mangrove forests, salt marshes, seagrass beds), and
 disease may be an important bottleneck for the conservation and
 restoration of these rapidly declining ecosystems. We are the first to
 report on widespread infection of Phytophthora and Halophytophthora
 species on a common seagrass species, Zostera marina (eelgrass), across
 the northern Atlantic and Mediterranean. In addition, we tested the
 effects of Halophytophthora sp. Zostera and Phytophthora gemini on Z.
 marina seed germination in a full-factorial laboratory experiment under
 various environmental conditions. Results suggest that Phytophthora
 species are widespread as we found these oomycetes in eelgrass beds in six
 countries across the North Atlantic and Mediterranean. Infection by
 Halophytophthora sp. Zostera, P. gemini, or both, strongly affected sexual
 reproduction by reducing seed germination sixfold. Our findings have
 important implications for seagrass ecology, because these putative
 pathogens probably negatively affect ecosystem functioning, as well as
 current restoration and conservation efforts.
description: Phytopthora prescreening
 seed scoresThis file contains
 prescreening data of Zostera marina seeds which were scored for infection
 (total, P. gemini and Halophytophthora sp. Zostera separately) and
 germination right after collection of the seeds in the field, prior to the
 experiment.results Phytopthora
 prescreening_seed scores.xlsxPhytopthora experiment
 seed scoresThis file contains
 experimental data of Zostera marina seeds which were scored for infection
 (total, P. gemini and Halophytophthora sp. Zostera separately) and
 germination after the 110 days incubation experiment. This file contains
 both individual seed data and data per experimental
 unit.results Phytopthora
 experiment_seed scores.xlsxPhytophthora experiment
 porewater sulfide concentrationsThis file contains
 porewater sulfide concentrations of each experimental unit, measured
 several days before the termination of the experiment.results Phytophthora
 experiment_porewater
 biogeochemistry.xlsx
DOI: 10.15468/dl.35385t
title: Occurrence Download

description: A dataset containing 394168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Geometry POLYGON((-79.49664 8.41317,-78.34105 8.26458,-77.66727 9.08024,-77.66727 10.09923,-79.72481 10.09923,-80.27681 9.25242,-80.00021 8.23304,-79.49664 8.41317))",
 "Geometry POLYGON((-81.00863 -2.85247,-80.37584 -2.86423,-79.74013 -2.54297,-79.10572 -1.19515,-78.94505 -0.79733,-78.53968 0.19906,-79.07294 1.68696,-80.96285 1.68696,-81.00863 -2.85247))",
 "Geometry POLYGON((-79.05589 1.45794,-79.1441 -0.20232,-77.82467 1.36953,-77.23373 2.26162,-76.70516 3.653,-78.96305 3.54864,-79.05589 1.45794))",
 "Geometry POLYGON((-78.21305 3.60637,-76.78551 3.55788,-76.65218 4.14334,-76.59471 5.82576,-76.56096 6.19873,-76.65623 7.27095,-77.03181 8.44549,-77.98586 9.23932,-78.44274 8.06193,-78.21305 3.60637))"
 ]
 },
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 394168 records from 279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000784-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.794d4
title: Data from: Local adaptation in transgenerational responses to predators

description: Environmental signals can induce phenotypic changes that span multiple
 generations. Along with phenotypic responses that occur during development
 (i.e., ‘within-generation’ plasticity), such ‘transgenerational
 plasticity’ (TGP) has been documented in a diverse array of taxa spanning
 many environmental perturbations. New theory predicts that temporal
 stability is a key driver of the evolution of TGP. We tested this
 prediction using natural populations of zooplankton from lakes in
 Connecticut that span a large gradient in the temporal dynamics of
 predator-induced mortality. We reared &gt;120 clones of Daphnia
 ambigua from 9 lakes for multiple generations in the presence/absence of
 predator cues. We found that temporal variation in mortality selects for
 within-generation plasticity while consistently strong (or weak) mortality
 selects for increased transgenerational plasticity. Such results provide
 the first evidence for local adaptation in TGP and argue that divergent
 ecological conditions select for phenotypic responses within and across
 generations.
description: Walsh et al. 2016 ProcB
 data
DOI: 10.5061/dryad.18kv7
title: Data from: The potential for arms race and Red Queen coevolution in a protist host-parasite system

description: The dynamics and consequences of host–parasite coevolution depend on the
 nature of host genotype-by-parasite genotype interactions (G × G) for host
 and parasite fitness. G × G with crossing reaction norms can yield cyclic
 dynamics of allele frequencies (“Red Queen” dynamics) while G × G where
 the variance among host genotypes differs between parasite genotypes
 results in selective sweeps (“arms race” dynamics). Here, we investigate
 the relative potential for arms race and Red Queen coevolution in a
 protist host–parasite system, the dinoflagellate Alexandrium minutum and
 its parasite Parvilucifera sinerae. We challenged nine different clones of
 A. minutum with 10 clones of P. sinerae in a fully factorial design and
 measured infection success and host and parasite fitness. Each host
 genotype was successfully infected by four to ten of the parasite
 genotypes. There were strong G × Gs for infection success, as well as both
 host and parasite fitness. About three quarters of the G × G variance
 components for host and parasite fitness were due to crossing reaction
 norms. There were no general costs of resistance or infectivity. We
 conclude that there is high potential for Red Queen dynamics in this
 host–parasite system.
description: Raberg_dataFile contains raw data with densities of dinoflagellates and sporozoites over time (day 2-16) for each flask.
DOI: 10.5061/dryad.205jp
title: Data from: The nutritional geometry of parental effects: maternal and paternal macronutrient consumption and offspring phenotype in a neriid fly

description: Although the ecological and evolutionary importance of environmentally
 induced parental effects is now widely recognized, such effects are still
 typically studied by contrasting just two environments in a single
 parental sex. Yet, parental effects should generally be viewed as reaction
 norms, and a more complete understanding of their ecological role
 therefore requires examining continuously varying and interacting
 environmental variables in both parental sexes. We used nutritional
 geometry to investigate linear, nonlinear and interactive effects of
 protein and carbohydrate in maternal and paternal larval diets on
 offspring juvenile development and viability and adult body size and shape
 in the fly Telostylinus angusticollis (Diptera: Neriidae). We found that
 egg hatching success was enhanced by protein in the maternal larval diet
 but reduced by protein in the paternal larval diet, while other juvenile
 traits were unaffected by parental diets. Maternal effects on offspring
 adult body size and head elongation (a secondary sexual trait in males)
 were mediated by linear and quadratic effects of protein, and were
 consistent in sons and daughters. In contrast, paternal effects on
 offspring body size and head elongation were mediated by carbohydrate
 effects or carbohydrate─protein interactions, and varied by offspring sex.
 Our findings show that macronutrients in the parental larval diet can have
 complex, nonlinear and interactive effects on offspring traits, and that
 the effects of maternal and paternal diets can be strikingly different.
 Effects of parental diet on offspring represent important fitness
 consequences of variation in nutrient intake, with potential implications
 for the evolution of foraging and reproductive strategies.
description: Viability and
 development time dataThe file contains
 protein and carbohydrate amounts (g/L) of larval diets on which the
 parental flies (mothers, fathers) were reared, and responses in egg
 hatching rate (out of 20 eggs), number of adults emerged, and development
 time (days from oviposition until emergence of first adult) for each
 replicate within each parental larval diet. Protein and carbohydrate
 amounts are shown raw and transformed ("centered") as described
 in the paper.Bonduriansky_et_al_VIABILITY_and_DEVELOPMENT.csvOffspring morphology dataThe file contains protein and carbohydrate amounts (both raw and transformed, as described in the paper) in the larval diets on which parental flies (mothers, fathers) were reared, and responses in offspring thorax length and head length (in pixels). Replicate codes identify the larval container from which one father and one mother were obtained. Each parent is also identified by a unique Parental ID code.Bonduriansky_et_al_MORPHOLOGY.csv
DOI: 10.5061/dryad.kg2nd
title: Data from: Pedigree error due to extra-pair reproduction substantially biases estimates of inbreeding depression

description: Understanding the evolutionary dynamics of inbreeding and inbreeding
 depression requires unbiased estimation of inbreeding depression across
 diverse mating systems. However, studies estimating inbreeding depression
 often measure inbreeding with error, for example, based on pedigree data
 derived from observed parental behavior that ignore paternity error
 stemming from multiple mating. Such paternity error causes error in
 estimated coefficients of inbreeding (f) and reproductive success and
 could bias estimates of inbreeding depression. We used complete “apparent”
 pedigree data compiled from observed parental behavior and analogous
 “actual” pedigree data comprising genetic parentage to quantify effects of
 paternity error stemming from extra-pair reproduction on estimates of f,
 reproductive success, and inbreeding depression in free-living song
 sparrows (Melospiza melodia). Paternity error caused widespread error in
 estimates of f and male reproductive success, causing inbreeding
 depression in male and female annual and lifetime reproductive success and
 juvenile male survival to be substantially underestimated. Conversely,
 inbreeding depression in adult male survival tended to be overestimated
 when paternity error was ignored. Pedigree error stemming from extra-pair
 reproduction therefore caused substantial and divergent bias in estimates
 of inbreeding depression that could bias tests of evolutionary theories
 regarding inbreeding and inbreeding depression and their links to
 variation in mating system.
description: Female_ARS_Data_ReidData for analysis of inbreeding depression in female annual reproductive successMale_ARS_Data_ReidData for analysis of inbreeding depression in male annual reproductive successFemale_LRS_Data_ReidData for analysis of inbreeding depression in female lifetime reproductive successMale_LRS_Data_ReidData for analysis of inbreeding depression in male lifetime reproductive successJuvFemale_Surv_Data_ReidData for analysis of inbreeding depression in juvenile female survival.JuvMale_Surv_Data_ReidData for analysis of inbreeding depression in juvenile male survivalAdFemale_Surv_Data_ReidData for analysis of inbreeding depression in adult female survivalAdMale_Surv_Data_ReidData for analysis of inbreeding depression in adult male survival
DOI: 10.5061/dryad.m172g
title: Data from: The relative importance of rapid evolution for plant-microbe interactions depends on ecological context

description: Evolution can occur on ecological time-scales, affecting community and
 ecosystem processes. However, the importance of evolutionary change
 relative to ecological processes remains largely unknown. Here, we analyse
 data from a long-term experiment in which we allowed plant populations to
 evolve for three generations in dry or wet soils and used a reciprocal
 transplant to compare the ecological effect of drought and the effect of
 plant evolutionary responses to drought on soil microbial communities and
 nutrient availability. Plants that evolved under drought tended to support
 higher bacterial and fungal richness, and increased fungal : bacterial
 ratios in the soil. Overall, the magnitudes of ecological and evolutionary
 effects on microbial communities were similar; however, the strength and
 direction of these effects depended on the context in which they were
 measured. For example, plants that evolved in dry environments increased
 bacterial abundance in dry contemporary environments, but decreased
 bacterial abundance in wet contemporary environments. Our results suggest
 that interactions between recent evolutionary history and ecological
 context affect both the direction and magnitude of plant effects on soil
 microbes. Consequently, an eco-evolutionary perspective is required to
 fully understand plant–microbe interactions.
description: for
 DryadThis data file contains
 three tabs, each described in the ReadMe file
DOI: 10.5061/dryad.gt6ks
title: Data from: Sensitivity and acclimation of three canopy-forming seaweeds to UVB radiation and warming

description: Canopy-forming seaweeds, as primary producers and foundation species,
 provide key ecological services. Their responses to multiple stressors
 associated with climate change could therefore have important knock-on
 effects on the functioning of coastal ecosystems. We examined interactive
 effects of UVB radiation and warming on juveniles of three habitat-forming
 subtidal seaweeds from Western Australia–Ecklonia radiata, Scytothalia
 dorycarpa and Sargassum sp. Fronds were incubated for 14 days at 16–30°C
 with or without UVB radiation and growth, health status, photosynthetic
 performance, and light absorbance measured. Furthermore, we used empirical
 models from the metabolic theory of ecology to evaluate the sensitivity of
 these important seaweeds to ocean warming. Results indicated that
 responses to UVB and warming were species specific, with Sargassum showing
 highest tolerance to a broad range of temperatures. Scytothalia was most
 sensitive to elevated temperature based on the reduced maximum quantum
 yields of PSII; however, Ecklonia was most sensitive, according to the
 comparison of activation energy calculated from Arrhenius’ model. UVB
 radiation caused reduction in the growth, physiological responses and
 thallus health in all three species. Our findings indicate that
 Scytothalia was capable of acclimating in response to UVB and increasing
 its light absorption efficiency in the UV bands, probably by up-regulating
 synthesis of photoprotective compounds. The other two species did not
 acclimate over the two weeks of exposure to UVB. Overall, UVB and warming
 would severely inhibit the growth and photosynthesis of these
 canopy-forming seaweeds and decrease their coverage. Differences in the
 sensitivity and acclimation of major seaweed species to temperature and
 UVB may alter the balance between species in future seaweed communities
 under climate change.
description: XiaoWernberg_Temp_UV_PLoSone_raw_dataRaw data on growth, photosynthetic yield, Health status and absorption.XiaoWernberg_Temp_UV_PLoSone_raw data.xlsx
DOI: 10.5061/dryad.t9q61
title: Data from: Genotype and diet affect resistance, survival, and fecundity but not fecundity tolerance

description: Insects are exposed to a variety of potential pathogens in their
 environment, many of which can severely impact fitness and health.
 Consequently, hosts have evolved resistance and tolerance strategies to
 suppress or cope with infections. Hosts utilizing resistance improve
 fitness by clearing or reducing pathogen loads, and hosts utilizing
 tolerance reduce harmful fitness effects per pathogen load. To understand
 variation in, and selective pressures on, resistance and tolerance, we
 asked to what degree they are shaped by host genetic background, whether
 plasticity in these responses depends upon dietary environment, and
 whether there are interactions between these two factors. Females from ten
 wild-type Drosophila melanogaster genotypes were kept on high- or
 low-protein (yeast) diets and infected with one of two opportunistic
 bacterial pathogens, Lactococcus lactis or Pseudomonas entomophila. We
 measured host resistance as the inverse of bacterial load in the early
 infection phase. The relationship (slope) between fly fecundity and
 individual-level bacteria load provided our fecundity tolerance measure.
 Genotype and dietary yeast determined host fecundity and strongly affected
 survival after infection with pathogenic P. entomophila. There was
 considerable genetic variation in host resistance, a commonly found
 phenomenon resulting from for example varying resistance costs or
 frequency-dependent selection. Despite this variation and the reproductive
 cost of higher P. entomophila loads, fecundity tolerance did not vary
 across genotypes. The absence of genetic variation in tolerance may
 suggest that at this early infection stage, fecundity tolerance is fixed
 or that any evolved tolerance mechanisms are not expressed under these
 infection conditions.
description: DGRP_dataThe data are split across six sub-datasets according to the questions / analyses in the manuscript.
DOI: 10.5061/dryad.r9q18
title: Data from: Network reorganization and breakdown of an ant–plant protection mutualism with elevation

description: Both the abiotic environment and the composition of animal and plant
 communities change with elevation. For mutualistic species, these changes
 are expected to result in altered partner availability, and shifts in
 context-dependent benefits for partners. To test these predictions, we
 assessed the network structure of terrestrial ant-plant mutualists and how
 the benefits to plants of ant inhabitation changed with elevation in
 tropical forest in Papua New Guinea. At higher elevations, ant-plants were
 rarer, species richness of both ants and plants decreased, and the average
 ant or plant species interacted with fewer partners. However, networks
 became increasingly connected and less specialized, more than could be
 accounted for by reductions in ant-plant abundance. On the most common
 ant-plant, ants recruited less and spent less time attacking a surrogate
 herbivore at higher elevations, and herbivory damage increased. These
 changes were driven by turnover of ant species rather than by
 within-species shifts in protective behaviour. We speculate that reduced
 partner availability at higher elevations results in less specialized
 networks, while lower temperatures mean that even for ant-inhabited
 plants, benefits are reduced. Under increased abiotic stress, mutualistic
 networks can break down, owing to a combination of lower population sizes,
 and a reduction in context-dependent mutualistic benefits.
description: Ant-plant census
 dataUnderstorey ant-plants
 and their ant-inhabitants censused in the field from 700 to 1600 metres
 above sea level in Madang Province, Papua New Guinea.Antplantdata.csvBehavioural data on plant-antsData recording the protective behaviour of ants on Myristica subalulata from 700 to 1400 metres above sea levelBaitingdata.csvHerbivory damage of Myristica subalulataHerbivory damage of Myristica subalulata included in the ant behavioural experimentBaiting.herbiv.csv1. Network analysisR code for network analysis2. Behaviour analysisR code for behavioural experiment3.Herbivory analysisR code for testing the effect of elevation on herbivory damage