cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6323036
title: Dataset of hydraulic aperture and effluent element concentrations over time

description: Numerical results presented in the article "Modelling of dissolution-induced permeability evolution of a granite fracture under crustal conditions". <br><br>File name: 1D_model_time_outflow_1.csv<br>Shown in Figure 6 and Figure 7<br>Initial contact area ratio R<sub>c0</sub>: 1.95%; <br>Initial mean mechanical aperture b<sub>m0</sub>: 9.12082 micro;<br><br>File name: 1D_model_time_outflow_2.csv<br>Shown in Figure 8(a)<br>Initial contact area ratio R<sub>c0</sub>: 1.90%; <br>Initial mean mechanical aperture b<sub>m0</sub>: 9.1147 micro;<br><br>File name: 1D_model_time_outflow_3.csv<br>Shown in Figure 8(a)<br>Initial contact area ratio R<sub>c0</sub>: 2.0%; <br>Initial mean mechanical aperture b<sub>m0</sub>: 9.1208 micro;<br><br>File name: 1D_model_time_outflow_4.csv<br>Shown in Figure 8(b)<br>Initial contact area ratio R<sub>c0</sub>: 1.95%; <br>Initial mean mechanical aperture b<sub>m0</sub>: 8.1047 micro;<br><br>File name: 1D_model_time_outflow_5.csv<br>Shown in Figure 8(b)<br>Initial contact area ratio R<sub>c0</sub>: 1.95%; <br>Initial mean mechanical aperture b<sub>m0</sub>: 10.1309 micro;<br>
DOI: 10.6084/m9.figshare.6323003
title: 3D Printable Patient Face and corresponding PET-CT Data for image-guided Therapy

description: The patient’s face (Face.stl) can be 3D Printed and then used for a marker-less face detection and registration with the CT scan. This is of particular interest for researchers/developers who work in the field of image-guided therapy in the facial area. <br>Please use the following citations if you use them in your work:<br>J. Egger, J. Wallner. 3D Printable Patient Face and corresponding PET-CT Data for image-guided Therapy. Figshare, 2018.
DOI: 10.6084/m9.figshare.6323003.v1
title: 3D Printable Patient Face and corresponding PET-CT Data for image-guided Therapy

description: The patient’s face (Face.stl) can be 3D Printed and then used for a marker-less face detection and registration with the CT scan. This is of particular interest for researchers/developers who work in the field of image-guided therapy in the facial area. <br>Please use the following citations if you use them in your work:<br>J. Egger, J. Wallner. 3D Printable Patient Face and corresponding PET-CT Data for image-guided Therapy. Figshare, 2018.
DOI: 10.6084/m9.figshare.6323003.v2
title: 3D Printable Patient Face and corresponding PET-CT Data for image-guided Therapy

description: The patient’s face (Face.stl) can be 3D Printed and then used for a marker-less face detection and registration with the CT scan. This is of particular interest for researchers/developers who work in the field of image-guided therapy in the facial area. <br>Please use the following citations if you use them in your work:<br>J. Egger, J. Wallner. 3D Printable Patient Face and corresponding PET-CT Data for image-guided Therapy. Figshare, 2018.
DOI: 10.6084/m9.figshare.6323003.v3
title: 3D Printable Patient Face and corresponding PET-CT Data for image-guided Therapy

description: The patient’s face (Face.stl) can be 3D Printed and then used for a marker-less face detection and registration with the CT scan. This is of particular interest for researchers/developers who work in the field of image-guided therapy in the facial area. <br>Please use the following citations if you use them in your work:<br>J. Egger, J. Wallner. 3D Printable Patient Face and corresponding PET-CT Data for image-guided Therapy. Figshare, 2018.
DOI: 10.6084/m9.figshare.6322946
title: 1D_model_time_outflow_1.csv

description: For Figure 6 and Figure 7:<br>Initial contact area ratio R<sub>c0</sub>: 1.95%; <br>Initial mean mechanical aperture b<sub>m0</sub>: 9.12082 micro;
DOI: 10.6084/m9.figshare.6322946.v1
title: 1D_model_time_outflow_1

description: For Figure 6 and Figure 7:<br><br>Initial contact area ratio Rc0: 1.95%; <br>Initial mean mechanical aperture bm0: 9.12082 micro;
DOI: 10.6084/m9.figshare.6322916
title: URIs.txt

description: URIs from LODStars and LODLaundromat
DOI: 10.6084/m9.figshare.6322916.v1
title: URIs.txt

description: URIs from LODStars and LODLaundromat
DOI: 10.6084/m9.figshare.6322895
title: Supplementary Material for: Lymphadenectomy and Adjuvant Therapy Improve Survival with Uterine Carcinosarcoma: A Large Retrospective Cohort Study

description: <b><i>Objective:</i></b> Uterine carcinosarcoma is a rare, aggressive subtype of endometrial cancer. Treatment consists of hysterectomy, bilateral salpingo-oophorectomy, and lymphadenectomy (LND). The survival benefit of LND in relation to adjuvant radio- and/or chemotherapy is unclear. We evaluated the impact of LND on survival in relation to adjuvant therapy in uterine carcinosarcoma. <b><i>Methods:</i></b> Retrospective data on 1,140 cases were combined from the Netherlands Cancer Registry (NCR) and the nationwide network and registry of histo- and cytopathology in the Netherlands (PALGA). LND was defined as the removal of any nodes. Additionally, cases where 10 nodes or less (LND ≤10) or more than 10 nodes (LND &gt; 10) were removed were analyzed separately. Adjuvant therapy was evaluated as radiotherapy, chemotherapy, or radiochemotherapy. Associations were analyzed by χ<sup>2</sup> test, log-rank test, and Cox regression analysis. <b><i>Results:</i></b> Overall survival (OS) had improved after total abdominal hysterectomy with bilateral salpingo-oophorectomy with LND &gt; 10 (HR 0.62, 95% CI 0.47–0.83). Adjuvant therapy was related to OS with an HR of 0.64 (95% CI 0.54–0.75) for radiotherapy, an HR of 0.65 (95% CI 0.48–0.88) for chemotherapy, and an HR of 0.25 (95% CI 0.13–0.46) for radiochemotherapy. Additionally, adjuvant treatment was related to OS when lymph nodes were positive (HR 0.22, 95% CI 0.11–0.42), but not when they were negative. <b><i>Conclusion:</i></b> LND is related to improved survival when more than 10 nodes are removed. Adjuvant therapy improves survival when LND is omitted, or when nodes are positive.
DOI: 10.6084/m9.figshare.6322895.v1
title: Supplementary Material for: Lymphadenectomy and Adjuvant Therapy Improve Survival with Uterine Carcinosarcoma: A Large Retrospective Cohort Study

description: <b><i>Objective:</i></b> Uterine carcinosarcoma is a rare, aggressive subtype of endometrial cancer. Treatment consists of hysterectomy, bilateral salpingo-oophorectomy, and lymphadenectomy (LND). The survival benefit of LND in relation to adjuvant radio- and/or chemotherapy is unclear. We evaluated the impact of LND on survival in relation to adjuvant therapy in uterine carcinosarcoma. <b><i>Methods:</i></b> Retrospective data on 1,140 cases were combined from the Netherlands Cancer Registry (NCR) and the nationwide network and registry of histo- and cytopathology in the Netherlands (PALGA). LND was defined as the removal of any nodes. Additionally, cases where 10 nodes or less (LND ≤10) or more than 10 nodes (LND &gt; 10) were removed were analyzed separately. Adjuvant therapy was evaluated as radiotherapy, chemotherapy, or radiochemotherapy. Associations were analyzed by χ<sup>2</sup> test, log-rank test, and Cox regression analysis. <b><i>Results:</i></b> Overall survival (OS) had improved after total abdominal hysterectomy with bilateral salpingo-oophorectomy with LND &gt; 10 (HR 0.62, 95% CI 0.47–0.83). Adjuvant therapy was related to OS with an HR of 0.64 (95% CI 0.54–0.75) for radiotherapy, an HR of 0.65 (95% CI 0.48–0.88) for chemotherapy, and an HR of 0.25 (95% CI 0.13–0.46) for radiochemotherapy. Additionally, adjuvant treatment was related to OS when lymph nodes were positive (HR 0.22, 95% CI 0.11–0.42), but not when they were negative. <b><i>Conclusion:</i></b> LND is related to improved survival when more than 10 nodes are removed. Adjuvant therapy improves survival when LND is omitted, or when nodes are positive.
DOI: 10.6084/m9.figshare.6322820
title: Landsat 8

description: Landsat 8 OLI scenes no. LC81920252013215LGN01 and LC81920252016240LGN01.
DOI: 10.6084/m9.figshare.6322820.v1
title: Landsat 8

description: Landsat 8 OLI scenes no. LC81920252013215LGN01 and LC81920252016240LGN01.
DOI: 10.6084/m9.figshare.6322817
title: 1D_model_time_outflow_2.csv

description: For Figure 8(a):<br>Initial contact area ratio R<sub>c0</sub>: 1.90%; <br>Initial mean mechanical aperture b<sub>m0</sub>: 9.1147 micro;
DOI: 10.6084/m9.figshare.6322814
title: 1D_model_time_outflow_5.csv

description: For Figure 8(b):<br>Initial contact area ratio R<sub>c0</sub>: 1.95%; <br>Initial mean mechanical aperture b<sub>m0</sub>: 10.1309 micro;
DOI: 10.6084/m9.figshare.6322814.v1
title: 1D_model_time_outflow_5.csv

description: For Figure 8(b):<br><br>Initial contact area ratio Rc0: 1.95%; <br>Initial mean mechanical aperture bm0: 10.1309 micro;
DOI: 10.6084/m9.figshare.6322811
title: 1D_model_time_outflow_1.csv

description: For Figure 6 and Figure 7:<br>Initial contact area ratio R<sub>c0</sub>: 1.95%; <br>Initial mean mechanical aperture b<sub>m0</sub>: 9.12082 micro;<br>
DOI: 10.6084/m9.figshare.6322811.v1
title: 1D_model_time_outflow_1.csv

description: For Figure 6 and Figure 7:<br>Initial contact area ratio Rc0: 1.95%; <br>Initial mean mechanical aperture bm0: 9.12082 micro;<br>
DOI: 10.6084/m9.figshare.6322808
title: 1D_model_time_outflow_4.csv

description: For Figure 8(b):<br>Initial contact area ratio R<sub>c0</sub>: 1.95%; <br>Initial mean mechanical aperture b<sub>m0</sub>: 8.1047 micro;
DOI: 10.6084/m9.figshare.6322808.v1
title: 1D_model_time_outflow_4.csv

description: # For Figure 8(b):<br>#<br># Initial contact area ratio Rc0: 1.95%; <br># Initial mean mechanical aperture bm0: 8.1047 micro;
DOI: 10.6084/m9.figshare.6322805
title: 1D_model_time_outflow_3.csv

description: For Figure 8(a):<br>Initial contact area ratio R<sub>c0</sub>: 2.0%; <br>Initial mean mechanical aperture b<sub>m0</sub>: 9.1208 micro;
DOI: 10.6084/m9.figshare.6322805.v1
title: 1D_model_time_outflow_3.csv

description: For Figure 8(a):<br><br>Initial contact area ratio Rc0: 2.0%; <br>Initial mean mechanical aperture bm0: 9.1208 micro;
DOI: 10.6084/m9.figshare.6322760
title: Biogeography and species delimitation of the rheophilic suckermouth catfish genus <i>Pseudolithoxus</i> (Siluriformes: Loricariidae), with the description of a new species from the Brazilian Amazon

description: The rapids-dwelling suckermouth catfish genus <i>Pseudolithoxus</i> was previously only known from the Guiana-Shield-draining Orinoco and Casiquiare river systems of Colombia and Venezuela, but new records have expanded this range considerably further into the Amazon basin of Brazil, and include occurrences from rivers draining the northern Brazilian Shield. These highly disjunct records are now placed in an evolutionary and phylogeographic context using a dated species tree constructed from mitochondrial (<i>Cytb</i>) and nuclear (<i>RAG1</i>) gene sequence data. Due to mito-nuclear discordance, we also delimit the putative species using statistical coalescent models and a range of additional metrics. We infer that at least two species of <i>Pseudolithoxus</i> are present in the Amazon basin: <i>P</i>. <i>nicoi</i>, previously only recorded from the río Casiquiare, but now also reported from the upper rio Negro, and a new species, which we describe herein from south-draining Guiana Shield and north-draining Brazilian Shield. Our data reject a simple model of Miocene vicariance in the group following uplift of the Uaupés Arch separating the Orinoco and Amazon systems, and instead suggest more complex dispersal scenarios through palaeo-connections in the Pliocene and also via the contemporary rio Negro and rio Madeira in the late Pleistocene. www.zoobank.org/urn:lsid:zoobank.org:pub:46A6BEC1-1A1B-4244-80-A6-FD9CF8DA0384.
DOI: 10.6084/m9.figshare.6322760.v2
title: Biogeography and species delimitation of the rheophilic suckermouth catfish genus <i>Pseudolithoxus</i> (Siluriformes: Loricariidae), with the description of a new species from the Brazilian Amazon

description: The rapids-dwelling suckermouth catfish genus <i>Pseudolithoxus</i> was previously only known from the Guiana-Shield-draining Orinoco and Casiquiare river systems of Colombia and Venezuela, but new records have expanded this range considerably further into the Amazon basin of Brazil, and include occurrences from rivers draining the northern Brazilian Shield. These highly disjunct records are now placed in an evolutionary and phylogeographic context using a dated species tree constructed from mitochondrial (<i>Cytb</i>) and nuclear (<i>RAG1</i>) gene sequence data. Due to mito-nuclear discordance, we also delimit the putative species using statistical coalescent models and a range of additional metrics. We infer that at least two species of <i>Pseudolithoxus</i> are present in the Amazon basin: <i>P</i>. <i>nicoi</i>, previously only recorded from the río Casiquiare, but now also reported from the upper rio Negro, and a new species, which we describe herein from south-draining Guiana Shield and north-draining Brazilian Shield. Our data reject a simple model of Miocene vicariance in the group following uplift of the Uaupés Arch separating the Orinoco and Amazon systems, and instead suggest more complex dispersal scenarios through palaeo-connections in the Pliocene and also via the contemporary rio Negro and rio Madeira in the late Pleistocene. www.zoobank.org/urn:lsid:zoobank.org:pub:46A6BEC1-1A1B-4244-80-A6-FD9CF8DA0384.
DOI: 10.6084/m9.figshare.6322760.v4
title: Biogeography and species delimitation of the rheophilic suckermouth catfish genus <i>Pseudolithoxus</i> (Siluriformes: Loricariidae), with the description of a new species from the Brazilian Amazon

description: The rapids-dwelling suckermouth catfish genus <i>Pseudolithoxus</i> was previously only known from the Guiana-Shield-draining Orinoco and Casiquiare river systems of Colombia and Venezuela, but new records have expanded this range considerably further into the Amazon basin of Brazil, and include occurrences from rivers draining the northern Brazilian Shield. These highly disjunct records are now placed in an evolutionary and phylogeographic context using a dated species tree constructed from mitochondrial (<i>Cytb</i>) and nuclear (<i>RAG1</i>) gene sequence data. Due to mito-nuclear discordance, we also delimit the putative species using statistical coalescent models and a range of additional metrics. We infer that at least two species of <i>Pseudolithoxus</i> are present in the Amazon basin: <i>P</i>. <i>nicoi</i>, previously only recorded from the río Casiquiare, but now also reported from the upper rio Negro, and a new species, which we describe herein from south-draining Guiana Shield and north-draining Brazilian Shield. Our data reject a simple model of Miocene vicariance in the group following uplift of the Uaupés Arch separating the Orinoco and Amazon systems, and instead suggest more complex dispersal scenarios through palaeo-connections in the Pliocene and also via the contemporary rio Negro and rio Madeira in the late Pleistocene. www.zoobank.org/urn:lsid:zoobank.org:pub:46A6BEC1-1A1B-4244-80-A6-FD9CF8DA0384.
DOI: 10.6084/m9.figshare.6322760.v3
title: Biogeography and species delimitation of the rheophilic suckermouth catfish genus <i>Pseudolithoxus</i> (Siluriformes: Loricariidae), with the description of a new species from the Brazilian Amazon

description: The rapids-dwelling suckermouth catfish genus <i>Pseudolithoxus</i> was previously only known from the Guiana-Shield-draining Orinoco and Casiquiare river systems of Colombia and Venezuela, but new records have expanded this range considerably further into the Amazon basin of Brazil, and include occurrences from rivers draining the northern Brazilian Shield. These highly disjunct records are now placed in an evolutionary and phylogeographic context using a dated species tree constructed from mitochondrial (<i>Cytb</i>) and nuclear (<i>RAG1</i>) gene sequence data. Due to mito-nuclear discordance, we also delimit the putative species using statistical coalescent models and a range of additional metrics. We infer that at least two species of <i>Pseudolithoxus</i> are present in the Amazon basin: <i>P</i>. <i>nicoi</i>, previously only recorded from the río Casiquiare, but now also reported from the upper rio Negro, and a new species, which we describe herein from south-draining Guiana Shield and north-draining Brazilian Shield. Our data reject a simple model of Miocene vicariance in the group following uplift of the Uaupés Arch separating the Orinoco and Amazon systems, and instead suggest more complex dispersal scenarios through palaeo-connections in the Pliocene and also via the contemporary rio Negro and rio Madeira in the late Pleistocene. www.zoobank.org/urn:lsid:zoobank.org:pub:46A6BEC1-1A1B-4244-80-A6-FD9CF8DA0384.
DOI: 10.6084/m9.figshare.6321782
title: Acoustic characterization of bats from Malta: setting a baseline for monitoring and conservation of bat populations

description: Bioacoustic research has made several advancements in developing systems to record extensive acoustic data and classify bat echolocation calls to species level using automated classifiers. These systems are useful as echolocation calls give valuable information on bat behaviour and ecology and hence are widely used for research and conservation of bat populations. Despite the challenges associated with automated classifiers, due to the interspecific differences in call characteristics of bat species found in the Maltese Islands, the use of a quantitative and automated approach is investigated. The sound analysis pipeline involved the use of an algorithm to clean sound files from background noise and measure temporal and spectral parameters of bat echolocation calls. These parameters were then fed to a trained and validated artificial neural network using a bat call library built from reference bat calls from Malta. The automatic classifier achieved an overall correct classification rate of 98%. This high correct classification rate for reliable species identification may have benefitted from the absence of typically problematic species, such as species in the genus <i>Myotis,</i> in the analyses. This study’s results pave the way for efficient and reliable bat acoustic surveys in Malta in aid of necessary monitoring and conservation by providing an updated bat species list and their echolocation characteristics.
DOI: 10.6084/m9.figshare.6321782.v1
title: Acoustic characterization of bats from Malta: setting a baseline for monitoring and conservation of bat populations

description: Bioacoustic research has made several advancements in developing systems to record extensive acoustic data and classify bat echolocation calls to species level using automated classifiers. These systems are useful as echolocation calls give valuable information on bat behaviour and ecology and hence are widely used for research and conservation of bat populations. Despite the challenges associated with automated classifiers, due to the interspecific differences in call characteristics of bat species found in the Maltese Islands, the use of a quantitative and automated approach is investigated. The sound analysis pipeline involved the use of an algorithm to clean sound files from background noise and measure temporal and spectral parameters of bat echolocation calls. These parameters were then fed to a trained and validated artificial neural network using a bat call library built from reference bat calls from Malta. The automatic classifier achieved an overall correct classification rate of 98%. This high correct classification rate for reliable species identification may have benefitted from the absence of typically problematic species, such as species in the genus <i>Myotis,</i> in the analyses. This study’s results pave the way for efficient and reliable bat acoustic surveys in Malta in aid of necessary monitoring and conservation by providing an updated bat species list and their echolocation characteristics.
DOI: 10.6084/m9.figshare.6321230
title: Dataset for: Serotonin transporter inhibition during neonatal period induces sex-dependent effects on mitochondrial bioenergetics in the rat brainstem

description: The serotonin reuptake is mainly regulated by the serotonin transporters (SERTs), which are abundantly found in the raphe nuclei, located in the brainstem. Previous studies have shown that dysfunction in the SERT has been associated with several disorders, including depression and cardiovascular diseases. In this manuscript, we aimed to investigate how gender and the treatment with a serotonin selective reuptake inhibitor (SSRI) could affect mitochondrial bioenergetics and oxidative stress in the brainstem of male and female rats. Fluoxetine, our chosen SSRI, was used during the neonatal period (i.e. from post-natal day 1 to post-natal day 21 - PND1 to PND21) in both male and female animals. Thereafter, experiments were conducted in adult rats (60 days old). Our results demonstrate that during lactation, fluoxetine treatment modulates the mitochondrial bioenergetics in a sex-dependent manner, such as improving male mitochondrial function and female antioxidant capacity.
DOI: 10.6084/m9.figshare.6321230.v1
title: Dataset for: Serotonin transporter inhibition during neonatal period induces sex-dependent effects on mitochondrial bioenergetics in the rat brainstem

description: The serotonin reuptake is mainly regulated by the serotonin transporters (SERTs), which are abundantly found in the raphe nuclei, located in the brainstem. Previous studies have shown that dysfunction in the SERT has been associated with several disorders, including depression and cardiovascular diseases. In this manuscript, we aimed to investigate how gender and the treatment with a serotonin selective reuptake inhibitor (SSRI) could affect mitochondrial bioenergetics and oxidative stress in the brainstem of male and female rats. Fluoxetine, our chosen SSRI, was used during the neonatal period (i.e. from post-natal day 1 to post-natal day 21 - PND1 to PND21) in both male and female animals. Thereafter, experiments were conducted in adult rats (60 days old). Our results demonstrate that during lactation, fluoxetine treatment modulates the mitochondrial bioenergetics in a sex-dependent manner, such as improving male mitochondrial function and female antioxidant capacity.
DOI: 10.6084/m9.figshare.6319553
title: Additional file 9: of De novo transcriptome assembly of the eight major organs of Sacha Inchi (Plukenetia volubilis) and the identification of genes involved in Îą-linolenic acid metabolism

description: Detailed FPKM and Annotation information of organ-specific unigenes. (XLS 646 kb)
DOI: 10.6084/m9.figshare.6319553.v1
title: Additional file 9: of De novo transcriptome assembly of the eight major organs of Sacha Inchi (Plukenetia volubilis) and the identification of genes involved in Îą-linolenic acid metabolism

description: Detailed FPKM and Annotation information of organ-specific unigenes. (XLS 646 kb)
DOI: 10.6084/m9.figshare.6319550
title: Additional file 5: of RNA sequencing analysis reveals quiescent microglia isolation methods from postnatal mouse brains and limitations of BV2 cells

description: Fold changes and average expression level of all transcripts among all groups in LPS, AÎ˛, and aging studies. (XLSX 723Â kb)
DOI: 10.6084/m9.figshare.6319550.v1
title: Additional file 5: of RNA sequencing analysis reveals quiescent microglia isolation methods from postnatal mouse brains and limitations of BV2 cells

description: Fold changes and average expression level of all transcripts among all groups in LPS, AÎ˛, and aging studies. (XLSX 723Â kb)
DOI: 10.6084/m9.figshare.6319532
title: Additional file 4: of RNA sequencing analysis reveals quiescent microglia isolation methods from postnatal mouse brains and limitations of BV2 cells

description: Fold changes and average expression level of all transcripts among various isolation methods. (XLSX 4831Â kb)