cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh165045.07fu
title: SH165045.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh165046.07fu
title: SH165046.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh165047.07fu
title: SH165047.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh165048.07fu
title: SH165048.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.1393338.v2
title: Geology and geochronology of the Sub-Antarctic Snares Islands/Tini Heke, New Zealand

description: The first comprehensive geological map, a summary of lithologies and new radiogenic isotope data (U–Pb, Rb–Sr) are presented for crystalline rocks of the Sub-Antarctic Snares Islands/Tini Heke, 150 km south of Stewart Island. The main lithology is Snares Granite (c. 109 Ma from U–Pb dating of zircon), which intrudes Broughton Granodiorite (c. 114 Ma from U–Pb zircon) on Broughton Island. Rafts of schist within Snares Granite are common on the outlying Western Chain islets, and rare on North East and Broughton islands. Zircon grains extracted from one schistose raft on Broughton Island are prismatic and yield an essentially unimodal age population of c. 116 Ma that is within error of the granodiorite. These properties suggest that the dated raft represents a meta-igneous rock despite its mica-rich nature. Some schistose rocks on the Western Chain contain coarse relict plagioclase phenocrysts and appear to have an igneous protolith. No conclusive metasedimentary rocks have been identified, although sillimanite-bearing mica-rich schist occurs on Rua. Deformation of the crystalline rocks occurred after Snares Granite intrusion and before cooling below muscovite K–Ar closure at 400 ± 50 °C at 95 Ma. This period overlaps the age of extensional ductile shear zones on Stewart Island. The discovery of several basaltic dykes, which cut across fabrics and are unmetamorphosed, indicates that volcanic rocks are associated with all Sub-Antarctic island groups. The larger of the islands are overlain by peat, which on North East Island also contains gravel deposits.
DOI: 10.6084/m9.figshare.1409398.v335
title: ABO phenotype protected reproduction as it is based on specific fucosylations.

description: The molecular biological relationship between human fertility and the formation of the ABO(H) blood group phenotype is evident in the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, the <i>Darwin/Wedgewood Dynasty</i>, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), in whom the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, which are encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, and the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and fucosyl residues appear, via developmental variations in their positions on cell surfaces and on the heavy chains of immunoglobulins, to increase or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signalling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exhibit high levels of poorly core-fucosylated IgG. Thus, when antibody-dependent cellular cytotoxicity can be increased 50-fold simply by removing the single fucose residue from the Fc glycan, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins, suggesting to promote anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1393338.v1
title: Geology and geochronology of the Sub-Antarctic Snares Islands/Tini Heke, New Zealand

description: The first comprehensive geological map, a summary of lithologies and new radiogenic isotope data (U–Pb, Rb–Sr) are presented for crystalline rocks of the Sub-Antarctic Snares Islands/Tini Heke, 150 km south of Stewart Island. The main lithology is Snares Granite (c. 109 Ma from U–Pb dating of zircon), which intrudes Broughton Granodiorite (c. 114 Ma from U–Pb zircon) on Broughton Island. Rafts of schist within Snares Granite are common on the outlying Western Chain islets, and rare on North East and Broughton islands. Zircon grains extracted from one schistose raft on Broughton Island are prismatic and yield an essentially unimodal age population of c. 116 Ma that is within error of the granodiorite. These properties suggest that the dated raft represents a meta-igneous rock despite its mica-rich nature. Some schistose rocks on the Western Chain contain coarse relict plagioclase phenocrysts and appear to have an igneous protolith. No conclusive metasedimentary rocks have been identified, although sillimanite-bearing mica-rich schist occurs on Rua. Deformation of the crystalline rocks occurred after Snares Granite intrusion and before cooling below muscovite K–Ar closure at 400 ± 50 °C at 95 Ma. This period overlaps the age of extensional ductile shear zones on Stewart Island. The discovery of several basaltic dykes, which cut across fabrics and are unmetamorphosed, indicates that volcanic rocks are associated with all Sub-Antarctic island groups. The larger of the islands are overlain by peat, which on North East Island also contains gravel deposits.
DOI: 10.6084/m9.figshare.1393337.v1
title: Crystal structures of amino acids: from bond lengths in glycine to metal complexes and high-pressure polymorphs

description: After the discovery of X-ray diffraction by crystals, amino acids were among the first organic compounds to have their solid-state structures investigated. The Cambridge Structural Database now contains more than 3500 entries for α-amino acids alone. After a short introduction dealing with the early history of X-ray structure determination, this review provides a classification of amino acid structures, describes essential structural elements, especially hydrogen bonding preferences and coordination to metal ions, and considers recent investigations on phase transitions as the result of extreme temperatures or pressure.
DOI: 10.6084/m9.figshare.1393372.v2
title: Versão para Jardim Botânico de Curitiba

description: Código fonte da primera versão 20150424
DOI: 10.6084/m9.figshare.1393372.v4
title: Jogo reciclar para Jardim Botânico de Curitiba

description: Código fonte da primera versão 20150424
DOI: 10.6084/m9.figshare.1409398.v336
title: ABO phenotype protected reproduction as it is based on specific fucosylations.

description: The molecular biological relationship between human fertility and the formation of the ABO(H) blood group phenotype is evident in the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, the <i>Darwin/Wedgewood Dynasty</i>, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), in whom the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, which are encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, and the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and fucosyl residues appear, via developmental variations in their positions on cell surfaces and on the heavy chains of immunoglobulins, to increase or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signalling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exhibit high levels of poorly core-fucosylated IgG. Thus, when antibody-dependent cellular cytotoxicity can be increased 50-fold simply by removing the single fucose residue from the Fc glycan, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins, suggesting to promote anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1393372.v3
title: ogo reciclar para Jardim Botânico de Curitiba

description: Código fonte da primera versão 20150424
DOI: 10.7284/137916
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT42-08 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1409398.v337
title: ABO phenotype protected reproduction as it is based on specific fucosylations.

description: The molecular biological relationship between human fertility and the formation of the ABO(H) blood group phenotype is evident in the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, the <i>Darwin/Wedgewood Dynasty</i>, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), in whom the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, which are encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, and the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and fucosyl residues appear, via developmental variations in their positions on cell surfaces and on the heavy chains of immunoglobulins, to increase or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signalling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exhibit high levels of poorly core-fucosylated IgG. Thus, when antibody-dependent cellular cytotoxicity can be increased 50-fold simply by removing the single fucose residue from the Fc glycan, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins, suggesting to promote anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1393311
title: Population metrics for fynbos birds, South Africa: densities, and detection and capture rates from a Mediterranean-type ecosystem

description: Estimates of bird numbers through quantification of density and range sizes are necessary for decisions regarding conservation status, yet counts of birds are often confounded by uncertainty of detection. The status of the endemic birds of the Fynbos biome is of interest due to their conservation value in a global biodiversity hotspot, the ecological services they provide, and their importance for the avitourism industry. We conducted an extensive repeated point-count survey across the Fynbos biome, South Africa, to determine probability of detection and covariates of site occupancy for 27 bird species. Detection of most species was influenced by time of day, temperature or vegetation height. Important covariates influencing site occupancy were vegetation height, altitude, time since fire and habitat type. Site occupancy for four fynbos-endemic species was positively associated with increasing altitude. We further conducted point counts and mist-netting in eastern regions of the Fynbos biome to calculate local density and standardised capture rates. A linear regression analysis showed that capture rates were a function of bird densities, but that several species were captured at higher rates than expected, notably nectarivorous species. During mist-netting a relative abundance count was conducted. We expected deviation of the fit of the regression of capture rates on relative abundance to correlate with detection probability, because we expect this index to underestimate skulking and cryptic species, but there was no correlation. Estimated species richness indices were highest for the biome-wide survey, and lowest for mist-netting due to the body size limit imposed by the capture technique. Overall, we showed that point counts are an effective method for surveying birds in the fynbos and that mist-netting can be used to create an index of relative abundance for smaller species, but can be significantly affected by net placement.
DOI: 10.7284/137918
title: Fluorometer data collected during research cruise AT42-08 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1393311.v2
title: Population metrics for fynbos birds, South Africa: densities, and detection and capture rates from a Mediterranean-type ecosystem

description: Estimates of bird numbers through quantification of density and range sizes are necessary for decisions regarding conservation status, yet counts of birds are often confounded by uncertainty of detection. The status of the endemic birds of the Fynbos biome is of interest due to their conservation value in a global biodiversity hotspot, the ecological services they provide, and their importance for the avitourism industry. We conducted an extensive repeated point-count survey across the Fynbos biome, South Africa, to determine probability of detection and covariates of site occupancy for 27 bird species. Detection of most species was influenced by time of day, temperature or vegetation height. Important covariates influencing site occupancy were vegetation height, altitude, time since fire and habitat type. Site occupancy for four fynbos-endemic species was positively associated with increasing altitude. We further conducted point counts and mist-netting in eastern regions of the Fynbos biome to calculate local density and standardised capture rates. A linear regression analysis showed that capture rates were a function of bird densities, but that several species were captured at higher rates than expected, notably nectarivorous species. During mist-netting a relative abundance count was conducted. We expected deviation of the fit of the regression of capture rates on relative abundance to correlate with detection probability, because we expect this index to underestimate skulking and cryptic species, but there was no correlation. Estimated species richness indices were highest for the biome-wide survey, and lowest for mist-netting due to the body size limit imposed by the capture technique. Overall, we showed that point counts are an effective method for surveying birds in the fynbos and that mist-netting can be used to create an index of relative abundance for smaller species, but can be significantly affected by net placement.
DOI: 10.6084/m9.figshare.1409398.v338
title: ABO phenotype protected reproduction as it is based on specific fucosylations.

description: The molecular biological relationship between human fertility and the formation of the ABO(H) blood group phenotype is evident in the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, the <i>Darwin/Wedgewood Dynasty</i>, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), in whom the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, which are encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, and the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and fucosyl residues appear, via developmental variations in their positions on cell surfaces and on the heavy chains of immunoglobulins, to increase or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signalling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exhibit high levels of poorly core-fucosylated IgG. Thus, when antibody-dependent cellular cytotoxicity can be increased 50-fold simply by removing the single fucose residue from the Fc glycan, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins, suggesting to promote anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1393272
title: Ефективність презентації діяльності наукової установи в соцмережах

description: Соцмережі − це сервіси обміну новинами, де кожен користувач − і автор, і читач. Такі установи, як Фонд Президентів України Національної бібліотеки України ім. В. І. Вернадського (https://www.facebook.com/fondprezudentiv), у своїй діяльності в соцмережах повинні дотримуватись певних принципів відповідно до медійної специфіки цих ресурсів. сторінку в соцмережі варто наповнювати власним контентом установи, використовуючи при цьому всі можливості та особливості соціальних медіа, інакше її існування буде суто формальним. Адміністрування такої сторінки важливе не тільки з огляду на потребу популяризації діяльності наукових установ та спеціалізованих фондів. Активна робота із презентації установи сприяє оптимізації організації праці співробітників установи, виділення кінцевої мети будь-якого елементу її діяльності, що полягає у «виході» продукту на зовні, до потенційного споживача.