cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.604
title: Data from: Multiple data sets, congruence, and hypothesis testing for the phylogeny of basal groups of the lizard genus Sceloporus (Squamata, Phrynosomatidae)

description: Several data partitions, including nuclear and mitochondrial gene
 sequences, chromosomes, isozymes, and morphological characters, were used
 to propose a new phylogeny and to test previously published hypotheses
 about the phylogenetic positions of basal clades of the lizard genus
 Sceloporus and the relationship of Sceloporus to the former genus
 "Sator". In accord with earlier studies, our results grouped
 "Sator" internal to Sceloporus, and both support a hypothesis of
 transgulfian vicariance for the origin of the former genus
 "Sator" on islands in the Sea of Cortez. Robustness of support
 for internal nodes in our best tree was established though widely used
 indices (bootstrap proportions, decay values) but also through congruence
 among independent data partitions. Several deep nodes in the tree
 recovered by a number of methods, including equally weighted and
 differentially weighted parsimony, and maximum likelihood models, are only
 weakly supported by the traditional indices, and this methodological
 concordance is taken as evidence for insensitivity of the deep structure
 of the topology to alternate assumptions.
description: Flores-Villela et al
 Data SetFlores.nexus
DOI: 10.15468/dl.vgn76f
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "TaxonKey is Pinus sylvestris mongholica"
 ]
}

 The dataset includes 72 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000886-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.c598v
title: Data from: Reconstructing the origin and spread of horse domestication in the Eurasian steppe

description: History of horse domestication remains poorly understood. On the basis of
 current evidence from archaeology, mitochondrial DNA, and Y-chromosomal
 sequencing, a number of different domestication scenarios have been
 proposed, ranging from the spread of domestic horses out of a restricted
 primary area of domestication to the domestication of numerous distinct
 wild horse populations. In this paper, we reconstruct both the population
 genetic structure of the extinct wild progenitor of domestic horses, Equus
 ferus, and the origin and spread of horse domestication in the Eurasian
 steppes by fitting a spatially explicit stepping-stone model to genotype
 data from &gt;300 horses sampled across northern Eurasia. We find
 strong evidence for an expansion of E. ferus out of eastern Eurasia about
 160 kya, likely reflecting the colonization of Eurasia by this species.
 Our best-fitting scenario further suggests that horse domestication
 originated in the western part of the Eurasian steppe and that domestic
 herds were repeatedly restocked with local wild horses as they spread out
 of this area. By showing that horse domestication was initiated in the
 western Eurasian steppe and that the spread of domestic herds across
 Eurasia involved extensive introgression from the wild, the Q:7 scenario
 of horse domestication proposed here unites evidence from archaeology,
 mitochondrial DNA, and Y-chromosomal DNA.
description: Warmuth et al. PNAS
 2012
DOI: 10.5061/dryad.278rt
title: Data from: Using host species traits to understand the consequences of resource provisioning for host–parasite interactions

description: 1.Supplemental food provided to wildlife by human activities can be more
 abundant and predictable than natural resources, and subsequent changes to
 wildlife ecology can have profound impacts on host–parasite interactions.
 Identifying traits of species associated with increases or decreases in
 infection outcomes with resource provisioning could improve assessments of
 wildlife most prone to disease risks in changing environments. 2.We
 conducted a phylogenetic meta-analysis of 342 host–parasite interactions
 across 56 wildlife species and three broad taxonomic groups of parasites
 to identify host-level traits that influence whether provisioning is
 associated with increases or decreases in infection. 3.We predicted that
 dietary generalists that capitalize on novel food would show greater
 infection in provisioned habitats owing to population growth and
 food-borne exposure to contaminants and parasite infectious stages.
 Similarly, species with fast life histories could experience stronger
 demographic and immunological benefits from provisioning that affect
 parasite transmission. We also predicted that wide-ranging and migratory
 behaviors could increase infection risks with provisioning if concentrated
 and non-seasonal foods promote dense aggregations that increase exposure
 to parasites. 4.We found that provisioning increased infection with
 bacteria, viruses, fungi, and protozoa (i.e., microparasites) most for
 wide-ranging, dietary generalist host species. Effect sizes for
 ectoparasites were also highest for host species with large home ranges
 but were instead lowest for dietary generalists. In contrast, the type of
 provisioning was a stronger correlate of infection outcomes for helminths
 than host species traits. 5.Our analysis highlights host traits related to
 movement and feeding behavior as important determinants of whether species
 experience greater infection with supplemental feeding. These results
 could help prioritize monitoring wildlife with particular trait profiles
 in anthropogenic habitats to reduce infectious disease risks in
 provisioned populations.
description: Becker et al 2017
 JAEstudy, parasite, host
 trait, and effect size data used in the phylogenetic
 meta-analysisbecker et al 2017_JAE R
 codeR
 code to obtain a host phylogeny and fit random-effect models for effect
 size, run model comparisons, and calculate variable importance within each
 parasite group
DOI: 10.5061/dryad.v2m91
title: Data from: Patterns of population structure for inshore bottlenose dolphins along the eastern United States

description: Globally distributed, the bottlenose dolphin (Tursiops truncatus) is found
 in a range of offshore and coastal habitats. Using 15 microsatellite loci
 and mtDNA control region sequences, we investigated patterns of genetic
 differentiation among putative populations along the eastern US shoreline
 (the Indian River Lagoon, Florida, and Charleston Harbor, South Carolina)
 (microsatellite analyses: n = 125, mtDNA analyses: n = 132). We further
 utilized the mtDNA to compare these populations with those from the
 Northwest Atlantic, Gulf of Mexico, and Caribbean. Results showed strong
 differentiation among inshore, alongshore, and offshore habitats (ФST =
 0.744). In addition, Bayesian clustering analyses revealed the presence of
 2 genetic clusters (populations) within the 250 km Indian River Lagoon.
 Habitat heterogeneity is likely an important force diversifying bottlenose
 dolphin populations through its influence on social behavior and foraging
 strategy. We propose that the spatial pattern of genetic variation within
 the lagoon reflects both its steep longitudinal transition of climate and
 also its historical discontinuity and recent connection as part of
 Intracoastal Waterway development. These findings have important
 management implications as they emphasize the role of habitat and the
 consequence of its modification in shaping bottlenose dolphin population
 structure and highlight the possibility of multiple management units
 existing in discrete inshore habitats along the entire eastern US
 shoreline.
description: richards_etal.msat_genotypesMicrosatellite DNA haplotype allele data generated by PCR amplification and genotyping. The following loci were genotyped as described - ev14, ff6, kwm12a, mk5, mk6, mk8, ppho130, ttr04, ttr19, ttr34, ttr48, ttr58, ttr63, txvt5, txvt7Richards_et al_MtDNA haplotypesFive unique mtDNA haplotypes found among 132 characterized bottlenose dolphin individuals. These sequences have also been deposited with GenBank under accession numbers KF366717-KF366721.Richards_etal_MtDNA haplo-2.txtrichards_etal_msat_genotypesCorresponding DNA microsatellite (STR - short tandem repeart) genotypes for complete T. tursiops dataset, including geographic location of collections (Lat/Long) and gender of the source individual.
DOI: 10.6084/m9.figshare.29821586
title: <b>Consentimiento informado y entrevistas de actores claves: entrevistas industrias culturales y creativas en Ibarra, Ecuador.</b>

description: Este conjunto de datos reúne <b>consentimientos informados, entrevistas semiestructuradas y materiales cualitativos</b> recopilados en el marco de una investigación sobre el <b>rol de los actores clave en el desarrollo de las industrias culturales y creativas</b> en el contexto educativo y territorial de <b>Ibarra, Ecuador</b>.Los datos fueron obtenidos siguiendo criterios éticos y metodológicos rigurosos, garantizando la participación voluntaria, informada y protegida de los estudiantes involucrados. El corpus incluye documentos de autorización, transcripciones de entrevistas y registros asociados, los cuales permiten analizar procesos de <b>creatividad, apropiación cultural, interacción comunicacional y fortalecimiento de ecosistemas creativos locales</b>.Este repositorio tiene como finalidad <b>respaldar empíricamente investigaciones académicas</b>, facilitar la <b>transparencia metodológica</b>, y servir como referencia para estudios futuros en los campos de <b>educación, comunicación, cultura e industrias creativas</b>, particularmente en contextos del Sur Global.
DOI: 10.6084/m9.figshare.29821586.v4
title: <b>Consentimiento informado y entrevistas de actores claves: entrevistas industrias culturales y creativas en Ibarra, Ecuador.</b>

description: Este conjunto de datos reúne <b>consentimientos informados, entrevistas semiestructuradas y materiales cualitativos</b> recopilados en el marco de una investigación sobre el <b>rol de los actores clave en el desarrollo de las industrias culturales y creativas</b> en el contexto educativo y territorial de <b>Ibarra, Ecuador</b>.Los datos fueron obtenidos siguiendo criterios éticos y metodológicos rigurosos, garantizando la participación voluntaria, informada y protegida de los estudiantes involucrados. El corpus incluye documentos de autorización, transcripciones de entrevistas y registros asociados, los cuales permiten analizar procesos de <b>creatividad, apropiación cultural, interacción comunicacional y fortalecimiento de ecosistemas creativos locales</b>.Este repositorio tiene como finalidad <b>respaldar empíricamente investigaciones académicas</b>, facilitar la <b>transparencia metodológica</b>, y servir como referencia para estudios futuros en los campos de <b>educación, comunicación, cultura e industrias creativas</b>, particularmente en contextos del Sur Global.
DOI: 10.6084/m9.figshare.29821586.v5
title: <b>Consentimiento informado y entrevistas de actores claves: entrevistas industrias culturales y creativas en Ibarra, Ecuador.</b>

description: Este conjunto de datos reúne <b>consentimientos informados, entrevistas semiestructuradas y materiales cualitativos</b> recopilados en el marco de una investigación sobre el <b>rol de los actores clave en el desarrollo de las industrias culturales y creativas</b> en el contexto educativo y territorial de <b>Ibarra, Ecuador</b>.Los datos fueron obtenidos siguiendo criterios éticos y metodológicos rigurosos, garantizando la participación voluntaria, informada y protegida de los estudiantes involucrados. El corpus incluye documentos de autorización, transcripciones de entrevistas y registros asociados, los cuales permiten analizar procesos de <b>creatividad, apropiación cultural, interacción comunicacional y fortalecimiento de ecosistemas creativos locales</b>.Este repositorio tiene como finalidad <b>respaldar empíricamente investigaciones académicas</b>, facilitar la <b>transparencia metodológica</b>, y servir como referencia para estudios futuros en los campos de <b>educación, comunicación, cultura e industrias creativas</b>, particularmente en contextos del Sur Global.
DOI: 10.5061/dryad.md103
title: Data from: Additive genetic variation for tolerance to estrogen pollution in natural populations of Alpine whitefish (Coregonus sp., Salmonidae)

description: The evolutionary potential of natural populations to adapt to
 anthropogenic threats critically depends on whether there exists additive
 genetic variation for tolerance to the threat. A major problem for
 water-dwelling organisms is chemical pollution, and among the most common
 pollutants is 17α-ethinylestradiol (EE2), the synthetic estrogen that is
 used in oral contraceptives and that can affect fish at various
 developmental stages, including embryogenesis. We tested whether there is
 variation in the tolerance to EE2 within Alpine whitefish. We sampled
 spawners from two species of different lakes, bred them in vitro in a
 full-factorial design each, and studied growth and mortality of embryos.
 Exposure to EE2 turned out to be toxic in all concentrations we tested (≥1
 ng/L). It reduced embryo viability and slowed down embryogenesis. We found
 significant additive genetic variation in EE2-induced mortality in both
 species, that is, genotypes differed in their tolerance to estrogen
 pollution. We also found maternal effects on embryo development to be
 influenced by EE2, that is, some maternal sib groups were more susceptible
 to EE2 than others. In conclusion, the toxic effects of EE2 were strong,
 but both species demonstrated the kind of additive genetic variation that
 is necessary for an evolutionary response to this type of pollution.
description: Brazzola et al. C.
 albellusMortality, time to
 hatching (day degrees), and hatchling body lenght (mm) and yolk sac volume
 (mm3) 1 and 10 days after hatching of whitefish (C. albellus) raised
 singly at one of several different concentrations of
 17alpha-etinyloestradiol (EE2) or FluconazoleBrazzola et al. C.
 palaeaMortality and hatching
 time (day degrees) of whitefish (C. palaea) raised singly at one of
 different concentrations of 17alpha-ethinyloestradiol
 (EE2)
DOI: 10.15468/dl.hn6zsp
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuatresia harlingiana",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 55 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000885-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.sq8gc87
title: Data from: Aspiration-based coevolution of link weights promotes cooperation in the spatial prisoner's dilemma game

description: In this article, we propose an aspiration-based coevolution of link
 weights, and we explore how this affects the evolution of cooperation in
 the spatial prisoner's dilemma game. In particular, an individual
 will increase the weight of its link to its neighbors only if the payoff
 received via this interaction will exceed a pre-defined aspiration.
 Conversely, if the received payoff is below this aspiration, the link
 weight with the corresponding neighbor will be decreased. Our simulation
 results show that an appropriate aspiration level leads to a
 high-cooperation plateau, whereas a too high or a too low aspiration will
 impede the evolution of cooperation. We explain these findings with a
 comprehensive analysis of transition points and with a systematic analysis
 of typical configuration patterns. The presented results provide further
 theoretical insights with regards to the impact of different aspiration
 levels on cooperation in human societies.
description: dataThis data file
 containing all the relevant data used in our paper
DOI: 10.5061/dryad.md23g
title: Data from: Ecological character displacement between the sexes

description: Theory suggests the evolution of sexual dimorphism in ecologically
 relevant traits can evolve purely through competition between the sexes
 for a shared resource. Although more parsimonious hypotheses exist for the
 evolution of ecological sexual dimorphisms, there are some
 underappreciated reasons to expect that competition may often play some
 role in the evolution of sexual dimorphism. Here, we build on past work to
 outline a set of sufficient criteria to demonstrate a role for resource
 competition in the evolution of sexual dimorphism, the most critical of
 which is that resource competition can be directly linked to sexual
 divergence along the axis of ecologically-relevant dimorphism. We then
 compare the geometry of fitness surfaces across experimental manipulations
 of density and sex ratio in a semiaquatic salamander (Notophthalmus
 viridescens). We find consistent disruptive selection on multivariate
 sexual dimorphism in feeding morphology, which increases in strength with
 density. Fitness and the strength of divergent selection are
 negative-frequency dependent in the manner expected under
 competition-driven divergence between the sexes. Our results constitute
 direct evidence of resource competition as a driver of sexually-antagonist
 selection and consequently the evolution of sexual dimorphism, showing how
 cause and effect can be separated in studies of ecological sexual
 dimorphism. We suggest resource competition may contribute to sexual
 divergence jointly with other sources of sex-biased selection, especially
 when ecological opportunity is sex-specific. EndDryadContent
description: DeLisle&Rowe_DATAData underlying all analyses in De lisle & Rowe 2015 Am. Nat.
DOI: 10.5061/dryad.b1d63
title: Data from: Evolution of early Eocene Palaeosinopa (Mammalia, Pantolestidae) in the Willwood Formation of the Bighorn Basin, Wyoming

description: Species-level diversity and evolution of Palaeosinopa from the Willwood
 Formation of the Bighorn Basin is reassessed based on substantial new
 material from the Bighorn, Powder River, and Wind River basins. We
 recognize three species of Palaeosinopa in the Willwood Formation of the
 Bighorn Basin: P. lutreola, P. incerta, and P. veterrima. The late
 Wasatchian species P. didelphoides is not present in the Bighorn Basin.
 The Willwood species can be differentiated based only on size. P.
 veterrima is the most common and wide-ranging species and is the most
 variable in size and morphology: the stratigraphically lowest individuals
 are smaller, with narrower, more crestiform lower molars; whereas the
 highest are larger, with wider, more bunodont teeth. Although it could be
 argued that these represent distinct species, we demonstrate that this
 morphological evolution occurred as the gradual and mosaic accumulation of
 features, suggesting in situ anagenetic evolution. The two smaller species
 are present only low in the section (biochrons Wa0–Wa4) and show no
 discernable evolution in size or morphology. A new skeleton of
 Palaeosinopa veterrima from the Willwood Formation is described, and other
 new postcrania are reported. The skeleton is the oldest associated
 skeleton of Palaeosinopa known, yet it is remarkably similar to those of
 younger, more derived pantolestids, the primary disparities being minor
 differences in proportions of the innominate, femur, and tibia, and
 co-ossification of the distal tibia and fibula. Either P. incerta or P.
 lutreola was likely the ancestral population that gave rise to the other
 Wasatchian Palaeosinopa. Alternatively, P. veterrima may have migrated
 into the Bighorn Basin from the Powder River Basin.
description: Supplemental_Data_1Measurements and relevant locality data for all specimens examined in the paper.
DOI: 10.5061/dryad.bg485
title: Data from: Sexual selection and assortative mating: an experimental test

description: Mate choice and mate competition can both influence the evolution of
 sexual isolation between populations. Assortative mating may arise if
 traits and preferences diverge in step, and, alternatively, mate
 competition may counteract mating preferences and decrease assortative
 mating. Here, we examine potential assortative mating between populations
 of Drosophila pseudoobscura that have experimentally evolved under either
 increased (‘polyandry’) or decreased (‘monogamy’) sexual selection
 intensity for 100 generations. These populations have evolved differences
 in numerous traits, including a male signal and female preference traits.
 We use a two males: one female design, allowing both mate choice and
 competition to influence mating outcomes, to test for assortative mating
 between our populations. Mating latency shows subtle effects of male and
 female interactions, with females from the monogamous populations
 appearing reluctant to mate with males from the polyandrous populations.
 However, males from the polyandrous populations have a significantly
 higher probability of mating regardless of the female's population.
 Our results suggest that if populations differ in the intensity of sexual
 selection, effects on mate competition may overcome mate choice.
description: Data assortative mating
 (all)The table contains all
 the data used in the study. Each row corresponds to a mating trial. The
 dataset is described in details in the README.txt file.Data_AM_for_Dryad.txt
DOI: 10.5061/dryad.kp8t3
title: Data from: Bite of the cats: relationships between functional integration and mechanical performance as revealed by mandible geometry

description: Cat-like carnivorous mammals represent a relatively homogeneous group of
 species whose morphology appears constrained by exclusive adaptations for
 meat eating. We present the most comprehensive dataset of extant and
 extinct cat-like species to test for evolutionary transformations in size,
 shape and mechanical performance, i.e. von Mises stress and surface
 traction, of the mandible. Size and shape were both quantified by means of
 Geometric Morphometrics while mechanical performance was assessed applying
 Finite Element Models to two dimensional geometry of the mandible.
 Additionally, we present the first almost complete composite phylogeny of
 cat-like carnivorans for which well-preserved fossil mandibles are known,
 including representatives of 35 extant and 59 extinct species of Felidae,
 Nimravidae and Barbourofelidae. This phylogeny was used to test
 morphological differentiation, allometry, and covariation of mandible
 parts within and among clades. After taking phylogeny into account, we
 found that both allometry and mechanical variables exhibit a significant
 impact on mandible shape. We also tested if mechanical performance was
 linked to morphological integration. Mechanical stress at the coronoid
 process is higher in sabertoothed cats than in any other clade. This is
 strongly related to the high degree of covariation within modules of
 sabertooths mandibles. We found significant correlation between
 integration at the clade level and per-clade averaged stress values, on
 both original data and by partialling out interclade allometry from shapes
 when calculating integration. This suggests a strong interaction between
 natural selection and the evolution of developmental and functional
 modules at the clade level.
description: Piras et al Bite of the
 cats online Appendices CORRECTThis is the list of
 online appendices.