cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3908981
title: Covid-19 Twitter Database: Turkish Sample

description: This dataset is a comprehensive dataset that includes Turkish tweet ids one month before and after of pandemic outbreak. You can see the tweets classified across COVID, economy, politics, religion, disinformation, international relations themes. To see research design and analyze the code for the text analysis please visit this link: https://github.com/burakozturan/css_covid19
DOI: 10.5281/zenodo.4467742
title: Three-dimensional Membrane Imaging with X-ray Ptychography

description: Segmented tomograms and domains for the computation of the membrane transport properties in Cramer et al., "Three-dimensional membrane imaging with X-ray ptychography: determination of membrane transport properties for membrane distillation", Transport in Porous Media, 2021, https://doi.org/10.1007/s11242-021-01603-4 Sample 1 & 4: Merck Millipore FGLP14250<br> Sample 2: Gore (Manufacturer specifications: pore size 0.22 microns, porosity 80%, thickness 81 microns)<br> Sample 3: Merck Millipore FHLP14250
description: {"references": ["Cramer et al., \"Three-dimensional membrane imaging with X-ray ptychography: determination of membrane transport properties for membrane distillation\", Transport in Porous Media, 2021, https://doi.org/10.1007/s11242-021-01603-4"]}
DOI: 10.5281/zenodo.4467741
title: Three-dimensional Membrane Imaging with X-ray Ptychography

description: Segmented tomograms and domains for the computation of the membrane transport properties in Cramer et al., "Three-dimensional membrane imaging with X-ray ptychography: determination of membrane transport properties for membrane distillation", Transport in Porous Media, 2021, https://doi.org/10.1007/s11242-021-01603-4 Sample 1 & 4: Merck Millipore FGLP14250<br> Sample 2: Gore (Manufacturer specifications: pore size 0.22 microns, porosity 80%, thickness 81 microns)<br> Sample 3: Merck Millipore FHLP14250
description: {"references": ["Cramer et al., \"Three-dimensional membrane imaging with X-ray ptychography: determination of membrane transport properties for membrane distillation\", Transport in Porous Media, 2021, https://doi.org/10.1007/s11242-021-01603-4"]}
DOI: 10.5281/zenodo.4762180
title: Investigation of the uncertainties of simulated optical properties of brown carbon in two Asian sites using a modified bulk aerosol optical scheme of the Community Atmospheric Model version 5.3 (CAM5.3)

description: Recent studies have suggested that brown carbon (BrC), an absorbing component in organic aerosol (OA), has strong absorption in the near-ultraviolet wavelengths, and contributes to regional and global radiative forcing. However, the inclusion of BrC in global climate models leads to significant uncertainties in estimated radiative forcing, mainly attributed to uncertain BrC properties and relevant BrC parameters assigned in the model. In this study, we modified the bulk aerosol optical scheme (BAOS) in the Community Atmospheric Model version 5.3 (CAM5.3) by including BrC absorption and evaluated the performance of the modified BAOS by comparing the simulated aerosol absorption with two-year surface observational data in two Asian cities, Kanpur, India and Nanjing, China. The mean relative errors in the simulated total aerosol absorption (B<sub>abs</sub>) and absorption Angstrom exponent (AAE) in modified BAOS are around 30% in Kanpur and even below 20% in Nanjing. Our results show that the inclusion of BrC remedies the underestimated total aerosol absorption by 20% and 14% on average at Kanpur and Nanjing, respectively, exhibiting a better agreement with ground-based observations of aerosol absorption at both sites. We also conducted a series of sensitivity experiments to quantify the uncertainties caused by varying parameters related to BrC. The model simulations suggest that the imaginary refractive index of BrC is the most significant factor contributing to the uncertainties in aerosol optical properties calculated in BAOS at the Kanpur site. While in the Nanjing site, both the particle size distribution and mixing state have dominant impacts on the calculated aerosol optical properties.
description: This study is supported by the National Natural Science Foundation of China (Grant number 41761144056, 41605106 and 41775137) and the National Important Project of the Ministry of Science and Technology (grant number 2017YFC1501404). Kirpa Ram thanks the Department of Science and Technology, Govt. of India for providing financial support under INSPIRE Faculty (#IFA-EAS-02) and SPLICE- Climate Change Programme (DST/CCP/Aerosol/87/2017).
DOI: 10.5281/zenodo.4498260
title: Investigation of the uncertainties of simulated optical properties of brown carbon in two Asian sites using a modified bulk aerosol optical scheme of the Community Atmospheric Model version 5.3 (CAM5.3)

description: Recent studies have suggested that brown carbon (BrC), an absorbing component in organic aerosol (OA), has strong absorption in the near-ultraviolet wavelengths, and contributes to regional and global radiative forcing. However, the inclusion of BrC in global climate models leads to significant uncertainties in estimated radiative forcing, mainly attributed to uncertain BrC properties and relevant BrC parameters assigned in the model. In this study, we modified the bulk aerosol optical scheme (BAOS) in the Community Atmospheric Model version 5.3 (CAM5.3) by including BrC absorption and evaluated the performance of the modified BAOS by comparing the simulated aerosol absorption with two-year surface observational data in two Asian cities, Kanpur, India and Nanjing, China. The mean relative errors in the simulated total aerosol absorption (B<sub>abs</sub>) and absorption Angstrom exponent (AAE) in modified BAOS are around 30% in Kanpur and even below 20% in Nanjing. Our results show that the inclusion of BrC remedies the underestimated total aerosol absorption by 20% and 14% on average at Kanpur and Nanjing, respectively, exhibiting a better agreement with ground-based observations of aerosol absorption at both sites. We also conducted a series of sensitivity experiments to quantify the uncertainties caused by varying parameters related to BrC. The model simulations suggest that the imaginary refractive index of BrC is the most significant factor contributing to the uncertainties in aerosol optical properties calculated in BAOS at the Kanpur site. While in the Nanjing site, both the particle size distribution and mixing state have dominant impacts on the calculated aerosol optical properties.
description: This study is supported by the National Natural Science Foundation of China (Grant number 41761144056, 41605106 and 41775137) and the National Important Project of the Ministry of Science and Technology (grant number 2017YFC1501404). Kirpa Ram thanks the Department of Science and Technology, Govt. of India for providing financial support under INSPIRE Faculty (#IFA-EAS-02) and SPLICE- Climate Change Programme (DST/CCP/Aerosol/87/2017).
DOI: 10.5281/zenodo.4776013
title: Data for paper "The Pyrolysis of Organic Compounds in Cosmic Dust during Atmospheric Entry"

description: The data plotted in the figures in the main paper and supporting information are contained in Excel files and Origin files. Raw atomic force microscopy and mass spectrometry data are also included in the relevant zipped folders.
DOI: 10.5281/zenodo.4776012
title: Data for paper "The Pyrolysis of Organic Compounds in Cosmic Dust during Atmospheric Entry"

description: The data plotted in the figures in the main paper and supporting information are contained in Excel files and Origin files. Raw atomic force microscopy and mass spectrometry data are also included in the relevant zipped folders.
DOI: 10.5281/zenodo.4835611
title: Raw data for Article "Structure and Reactivity of N-Heterocyclic Alkynyl Hypervalent Iodine Reagents"

description: Raw NMR, MS, IR and HPLC data for the article "Structure and Reactivity of N-Heterocyclic Alkynyl Hypervalent Iodine Reagents" published in Chemistry A European Journal, DOI: https://doi.org/10.1002/chem.202101475 The number of the folders correspond to compounds numbers in the article. All details concerning conditions and equipment for measurements can be found in the supporting information of the article.
DOI: 10.5281/zenodo.4835610
title: Raw data for Article "Structure and Reactivity of N-Heterocyclic Alkynyl Hypervalent Iodine Reagents"

description: Raw NMR, MS, IR and HPLC data for the article "Structure and Reactivity of N-Heterocyclic Alkynyl Hypervalent Iodine Reagents" published in Chemistry A European Journal, DOI: https://doi.org/10.1002/chem.202101475 The number of the folders correspond to compounds numbers in the article. All details concerning conditions and equipment for measurements can be found in the supporting information of the article.
DOI: 10.5281/zenodo.4841310
title: Datasets & utils for paper USING PRE-TRAINED MODELS TO PARTIALLY AUTOMATE CODE REVIEW ACTIVITIES

description: Raw and processed datasets & Configurations files for Pre-training and Fine-Tuning T5 models <strong>Pre-Training dataset </strong>Obtained by mining Stack Overflow and CodeSearchNet data. <strong>Fine-Tuning dataset </strong>We will fine-tune our T5 small model on different datasets obtained by mining code review data from Gerrit and GitHub repositories. <strong>Fine-Tuning dataset v1 (Small)</strong> Same dataset used by Tufano et al., abstracted code and raw comments. <strong>Fine-Tuning dataset v2 (Small)</strong> Same dataset used by Tufano et al., not abstracted code and cleaned comments. <strong>Fine-Tuning dataset (Large) </strong>Our new Large dataset
DOI: 10.17632/nksdpmrdxg.1
title: Data for: From Targeted Private Benefits to Public Goods: Land, Patronage and Political Institutions in Colombia

description: This .DTA and .Do file correspond to the paper "From Targeted Private Benefits to Public Goods: Land, Patronage and Political Institutions in Colombia"
DOI: 10.5281/zenodo.4493069
title: manual general clone validation results

description: Manual general clone validation results. These clones are detected from BigCloneBench.
DOI: 10.5281/zenodo.4441360
title: manual general clone validation results

description: Manual general clone validation results. These clones are detected from BigCloneBench.
DOI: 10.5281/zenodo.4843567
title: PEGylation of near infrared fluorescence ureter probes improves non-target tissue uptake and extends kidney excretion time - Supplemental Information

description: PEGylation of near infrared fluorescence ureter probes improves non-target tissue uptake and extends kidney excretion time - Supplemental Information
DOI: 10.5281/zenodo.4843566
title: PEGylation of near infrared fluorescence ureter probes improves non-target tissue uptake and extends kidney excretion time - Supplemental Information

description: PEGylation of near infrared fluorescence ureter probes improves non-target tissue uptake and extends kidney excretion time - Supplemental Information
DOI: 10.5281/zenodo.4314003
title: Carbene‐Catalyzed Activation of Remote Nitrogen Atoms of (benz)imidazole‐derived aldimines for Enantioselective Synthesis of Heterocycles

description: This folder /xyz_structures/ contains the geometries (in .xyz format together with the gas-phase energy, E) accompanying the paper "Carbene‐Catalyzed Activation of Remote Nitrogen Atoms of (benz)imidazole‐derived aldimines for Enantioselective Synthesis of Heterocycles" citation: X. Yang, Y. Xie, J. Xu, S. Ren, B. Mondal, L. Zhou, W. Tian, X. Zhang, L. Hao, Z. Jin, Y. R. Chi, Angew. Chem. Int. Ed. 2021, 60, 7906. Where conformers occur, they are always named from the lowest Gibbs energy to the highest in ascending order from c1 (sometimes omitted), c2, c3, ... This folder has the following structure and they correspond to the raw data in the SI: /DFT_optimized_structures/ --&gt; contains DFT-optimized structures for the computational study of the mechanism for the reaction between intermediates IV-3b/IV-3ac and isatin substrate 2b. /DI-AS_analysis/ --&gt; structures along the IRC pathways for Si-ts1 (in subfolder /Si-ts1/) and Re-ts1 (in subfolder /Re-ts1/) taken for distortion interaction-activation strain (DI-AS) model analysis. --&gt; structures along the IRC points are named p&lt;num&gt;.xyz where &lt;num&gt; denotes number of points along the IRC from the TS; fragments results from each point are denoted p&lt;num&gt;_f1.xyz and p&lt;num&gt;_f2.xyz. For example, the first point along the IRC is named p1.xyz and its component fragments are denoted p1_f1.xyz and p2_f2.xyz.
DOI: 10.5281/zenodo.4281604
title: Carbene‐Catalyzed Activation of Remote Nitrogen Atoms of (benz)imidazole‐derived aldimines for Enantioselective Synthesis of Heterocycles

description: This folder /xyz_structures/ contains the geometries (in .xyz format together with the gas-phase energy, E) accompanying the paper "Carbene‐Catalyzed Activation of Remote Nitrogen Atoms of (benz)imidazole‐derived aldimines for Enantioselective Synthesis of Heterocycles" citation: X. Yang, Y. Xie, J. Xu, S. Ren, B. Mondal, L. Zhou, W. Tian, X. Zhang, L. Hao, Z. Jin, Y. R. Chi, Angew. Chem. Int. Ed. 2021, 60, 7906. Where conformers occur, they are always named from the lowest Gibbs energy to the highest in ascending order from c1 (sometimes omitted), c2, c3, ... This folder has the following structure and they correspond to the raw data in the SI: /DFT_optimized_structures/ --&gt; contains DFT-optimized structures for the computational study of the mechanism for the reaction between intermediates IV-3b/IV-3ac and isatin substrate 2b. /DI-AS_analysis/ --&gt; structures along the IRC pathways for Si-ts1 (in subfolder /Si-ts1/) and Re-ts1 (in subfolder /Re-ts1/) taken for distortion interaction-activation strain (DI-AS) model analysis. --&gt; structures along the IRC points are named p&lt;num&gt;.xyz where &lt;num&gt; denotes number of points along the IRC from the TS; fragments results from each point are denoted p&lt;num&gt;_f1.xyz and p&lt;num&gt;_f2.xyz. For example, the first point along the IRC is named p1.xyz and its component fragments are denoted p1_f1.xyz and p2_f2.xyz.
DOI: 10.5281/zenodo.4843919
title: drugcomb_oct2019_withdoses

description: Columns are: "block_id"|"drug_row"|"drug_col"|"drug_row_cid"|"drug_col_cid"|"conc_r"|"conc_c"|"inhibition"|"synergy_zip"|"synergy_bliss"|"synergy_loewe"|"synergy_hsa"|"cell_line_name"|"css_ri". * block_id refers to one experiment, that is testing two drugs in different doses in a single cell line. Biological replicates have different block_ids * drug_row and drug_col are commonly used drug names * drug_row_cid and drug_col_cid are CID drug identifiers * conc_c and conc_r are drug doses in uM * inhibition refers to percent growth inhibition as measured using a CTG cell viability assay (in most cases) * four synergy scores are calculated using distinct four null models. For further info please refer to Zagidullin 2019 in Nucleic Acids Research * CSS_RI is a combination sensitivity score, for more info refer to Malyutina 2019 in PLoS computational biology
description: {"references": ["Zagidullin B, Aldahdooh J, Zheng S, et al. DrugComb: an integrative cancer drug combination data portal. Nucleic Acids Res. 2019; 47:W43\u2013W51"]}
DOI: 10.5281/zenodo.4843918
title: drugcomb_oct2019_withdoses

description: Columns are: "block_id"|"drug_row"|"drug_col"|"drug_row_cid"|"drug_col_cid"|"conc_r"|"conc_c"|"inhibition"|"synergy_zip"|"synergy_bliss"|"synergy_loewe"|"synergy_hsa"|"cell_line_name"|"css_ri". * block_id refers to one experiment, that is testing two drugs in different doses in a single cell line. Biological replicates have different block_ids * drug_row and drug_col are commonly used drug names * drug_row_cid and drug_col_cid are CID drug identifiers * conc_c and conc_r are drug doses in uM * inhibition refers to percent growth inhibition as measured using a CTG cell viability assay (in most cases) * four synergy scores are calculated using distinct four null models. For further info please refer to Zagidullin 2019 in Nucleic Acids Research * CSS_RI is a combination sensitivity score, for more info refer to Malyutina 2019 in PLoS computational biology
description: {"references": ["Zagidullin B, Aldahdooh J, Zheng S, et al. DrugComb: an integrative cancer drug combination data portal. Nucleic Acids Res. 2019; 47:W43\u2013W51"]}
DOI: 10.5281/zenodo.4844290
title: Appendix 3 Data (CRD42019136093)

description: Appendix 3 Data for "Interventions to improve mental health in people with Autism Spectrum Disorder: a systematic review and network meta-analysis" (CRD42019136093)
DOI: 10.5281/zenodo.780985
title: Hansard Speeches 1979-2021: Version 3.1.0

description: Full details are available at https://evanodell.com/projects/datasets/hansard-data <strong>Version 3.1.0 contains the following changes:</strong> - Coverage up to the end of April 2021
description: This release is an update of previously released datasets. See full documentation for details.
DOI: 10.5281/zenodo.4845492
title: Accompanying Measurements with miniDHC at the Black Sea near the City of Gelendzhik from the end of June to mid-October 2019

description: Field measurements to test the possibilities of the miniDHC took place at the Black Sea, near the city of Gelendzhik from the end of June to mid-October 2019. Ashamba research vessel was used to perform accompanying measurements. Average concentration, biomass and particle sizes profiles over depth (All_Concentr_Size.xlsx), measured by the miniDHC in forward motion (submersion) at stations: No. 4 (coordinates – 44°32.1922'N 37°56.0360'E; submersion – up to 70 m), No. 5 (44°32.0743'N 37°55.3762'E; up to 100 m), No. 6 (44°31.2398'N 37°54.3828'E; up to 500 m). All_Size_Histograms.xlsx shows the distribution statistics of particle size.
DOI: 10.5281/zenodo.4845543
title: Appendix 2 Data for CD013157

description: Appendix 2 Data for the Cochrane review: "Nutritional supplementation for non‐alcohol‐related fatty liver disease: a network meta‐analysis" (CD013157)
DOI: 10.5281/zenodo.4845630
title: Appendix 2 Data for CD013157

description: Appendix 2 Data for the Cochrane review: "Nutritional supplementation for non‐alcohol‐related fatty liver disease: a network meta‐analysis" (CD013157)
DOI: 10.5281/zenodo.4845637
title: Appendix 3 Data (CRD42019136093)

description: Appendix 3 Data for "Interventions to improve mental health in people with Autism Spectrum Disorder: a systematic review and network meta-analysis" (CRD42019136093)
DOI: 10.5281/zenodo.4844289
title: Appendix 3 Data (CRD42019136093)

description: Appendix 3 Data for "Interventions to improve mental health in people with Autism Spectrum Disorder: a systematic review and network meta-analysis" (CRD42019136093)
DOI: 10.5281/zenodo.4846212
title: Processed microarray datasets

description: Microarray datasets with common features (genes mapped by Entrez ID).
DOI: 10.5281/zenodo.4846211
title: Processed microarray datasets

description: Microarray datasets with common features (genes mapped by Entrez ID).
DOI: 10.6084/m9.figshare.14702148
title: figure 2

description: figure 2
DOI: 10.6084/m9.figshare.14702148.v2
title: figure 2

description: figure 2
DOI: 10.6084/m9.figshare.14702148.v1
title: figure 2A

description: figure 2A
DOI: 10.5281/zenodo.4851677
title: yimingfish/TPC_Supplemental-Data:

description: The datasets of CHG-hypo and CHH-hypo DMRs in various mutants.
DOI: 10.5281/zenodo.4851676
title: yimingfish/TPC_Supplemental-Data:

description: The datasets of CHG-hypo and CHH-hypo DMRs in various mutants.
DOI: 10.34740/kaggle/dsv/2284432
title: Twitter: Trending Tweets per week (updated weekly)
DOI: 10.6084/m9.figshare.14702175
title: FIGURE 5

description: figure 5
DOI: 10.6084/m9.figshare.14702175.v1
title: FIGURE 5

description: figure 5
DOI: 10.6084/m9.figshare.14702193
title: Genome annotation for high royal jelly-producing honeybee

description: The file is in GFF format, which describes the genome annotation for high royal jelly-producing honeybee.
DOI: 10.6084/m9.figshare.14702193.v1
title: Genome annotation for high royal jelly-producing honeybee

description: The file is in GFF format, which describes the genome annotation for high royal jelly-producing honeybee.
DOI: 10.25345/c56n8z
title: MassIVE MSV000087543 - Mass spectrometry-based direct detection of multiple types of protein thiol modifications in pancreatic beta cells under endoplasmic reticulum stress
title: A 2D-LC-MS/MS strategy coupled with TMT-10 labeling was applied to mouse pancreatic beta cells (hetaTC-6) induced with ER stress by Thapsigargin to study the global proteome and protein cysteine PTM changes under ER stress. Samples were digested with trypsin, labeled with 10-plex TMT, then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS processing pipeline
DOI: 10.6084/m9.figshare.14702698.v1
title: Additional file 1 of Estimating the indirect prevalence of female genital mutilation/cutting in Switzerland

description: Additional file 1. This is the full excel file of all FGM/C indirect estimates from 2010 to 2018 for women and girls living in Switzerland.
DOI: 10.6084/m9.figshare.14702610.v1
title: Additional file 1 of β-Sitosterol differentially regulates key metabolites for growth improvement and stress tolerance in rice plants during prolonged UV-B stress

description: Additional file 1: Table S1. Table showing different relative concentration of 72 metabolites (organic acids, amino acids, sugars, and others) in triplicate. ns - non-stress, uvs - UV-B stress.
DOI: 10.6084/m9.figshare.14702590.v1
title: Additional file 1 of Hypergraph models of biological networks to identify genes critical to pathogenic viral response

description: Additional file 1. This Microsoft Excel file contains the ranked lists of genes that were compared in Figure 4. Each ranked list is in its own sheet in the Excel file: hypergraph betweenness (average s-betweenness centrality for 1 ≤ s ≤ 50 is in one sheet), hypergraph closeness (average harmonic s-closeness centrality for 1 ≤ s ≤ 50 is in another sheet), hyperedge size, CLR degree, CLR betweenness, CLR closeness, and average fold change. The ranked lists are of different length because some genes were not included in the hypergraph or graph based on the (hyper)graph construction criteria.
DOI: 10.6084/m9.figshare.14702556.v1
title: Additional file 1 of Multiplexed SSR marker analysis of Diplocarpon coronariae reveals clonality within samples from Middle Europe and genetic distance from Asian and North American isolates

description: Additional file 1: Table S1. A list of all Dc samples and their geographic origin and amplicon sizes (bp) for each SSR marker.
DOI: 10.6084/m9.figshare.14702554.v1
title: Additional file 8 of Evaluation of acidogenesis products’ effect on biogas production performed with metagenomics and isotopic approaches

description: Additional file 8. Functional annotation of recovered MAGs obtained using DRAM software (Distilled and Refined Annotation of Metabolism). KEGG IDs of annotated genes are also reported.
DOI: 10.6084/m9.figshare.14702551.v1
title: Additional file 7 of Evaluation of acidogenesis products’ effect on biogas production performed with metagenomics and isotopic approaches

description: Additional file 7. Relative abundance of MAGs calculated for different reactors and time points. MAGs enriched under different conditions are also reported.
DOI: 10.6084/m9.figshare.14702548.v1
title: Additional file 6 of Evaluation of acidogenesis products’ effect on biogas production performed with metagenomics and isotopic approaches

description: Additional file 6. Taxonomic results obtained for recovered MAGs. Results obtained using CAT/BAT and GTDB-Tk software are reported.
DOI: 10.6084/m9.figshare.14702545.v1
title: Additional file 5 of Evaluation of acidogenesis products’ effect on biogas production performed with metagenomics and isotopic approaches

description: Additional file 5. Quality of recovered MAGs according to results obtained from ckeckM software. Main parameters calculated for MAG genomes are also included.