cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.18666434
title: An improved plant CRISPR-Cas9 system for generating <i>Cas9</i>-free multiplex mutants

description: CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)-Cas9 mediated gene editing systems have been used in a variety of organisms, including plants. This system can efficiently edit target genes to generate mutants, especially multiplex mutants, which are invaluable genetic materials for gene functional studies. Although the use of traditional hybridization technology to construct multiplex mutants has been widely used in plant research, the complex screening and identification, long construction cycle and other problems have always troubled researchers. Therefore, in the current plant science research, the use of CRISPR-Cas9 mediated multiplex genome editing to construct multiplex mutants has become a mainstream technology. Here, we designed an improved plant CRISPR-Cas9 mediated multiplex genome vector system. The In-fusion cloning technology was selected to conveniently assemble multiple tandem <i>sgRNA</i> (<i>Single-guide RNA</i>) expression frames. In this system, <i>Cas9</i>-free plants can be easily selected by examining mCherry fluorescence in T<sub>2</sub> transgenic plants. By using this system, <i>Cas9</i>-free homozygous triple mutant was obtained, demonstrating the availability of our system.
DOI: 10.6084/m9.figshare.5559007
title: Provenance and tectonic significance of late Mesoproterozoic detrital zircons from the Tonian system, northern margin of the North China Craton

description: The involvement of the North China Craton (NCC) in the assembly or breakup of Rodinia has long been debated. Studies of palaeomagnetism, mafic sills (dikes), igneous events, and sedimentary records have led to contrasting opinions on this topic. No igneous events related to the late Mesoproterozoic assembly of Rodinia have been reported in the NCC. However, the authors found numerous late Mesoproterozoic zircons in the Tonian system on the northern margin of the NCC. The Tonian Zhulazhagamaodao formation is composed of meta-sandstone, siltstone, slate, carbonate, and dolomine of the littoral to neritic facies and occurs mainly in the western part of the Bayan Obo–Zhaertai–Langshan rift. U–Pb dating of detrital zircons from the Tonian system reveals age peaks at 1079 ± 23 Ma, 1092 ± 22 Ma, 1175 ± 50 Ma, 1175 ± 18 Ma, 1260 ± 45 Ma, 1266 ± 16 Ma, and 1270 ± 26 Ma, which correspond to the timing of Rodinia assembly. Considering that coeval igneous rocks and orogenic belts developed mostly in the Laurentia–Baltica cratons, we propose that these cratons supplied clastic material to the northern margin of the NCC and that they had a close spatial relationship between each other during the Tonian.
DOI: 10.6084/m9.figshare.5559070.v1
title: Early Cretaceous rift-related volcanism in the Songliao Basin, NE China – A geochemical study

description: Following the amalgamation of the Siberian and North China Cratons, NE China, as part of the Central Asian Orogenic Belt (CAOB), underwent Late Mesozoic lithospheric extension that was associated with volcanic activity. The Songliao Basin is the most important rift structure formed during these processes and contains voluminous volcanic rocks interlayered with sedimentary infill. Mafic-to-intermediate lavas are associated with felsic ones. This study focusses on the geochemical compositions of the less-widespread Early Cretaceous mafic-to-intermediate lavas in the Songliao Basin and compares them with the more abundant felsic rocks. Two mafic-to-intermediate magma series, one with alkaline and the other with sub-alkaline affinity, were identified. High MgO and Cr contents, low Th/Nb and La/Nb ratios, and variable but depleted Nd isotope compositions indicate that both magma suites were most likely formed by the melting of enriched upper mantle sources. Sub-alkaline mafic-to-intermediate rocks and I-type rhyolites define a co-genetic magma series. This rock suite was produced by the melting of subduction-modified lithospheric mantle and subsequent magma evolution as well as crustal melting during lithospheric extension. Alkaline mafic-to-intermediate rocks and A-type rhyolites form another co-genetic magma suite that was produced under within-plate conditions from an OIB-type mantle source, supposed to be the heterogeneous shallow asthenosphere and/or the lower lithosphere. Decompression partial melting of this mantle source requires a relatively thin lithosphere. The development of alkaline mafic rocks and A-type rhyolites as typical bimodal volcanic assemblage reflects that lithospheric thinning below the Songliao Basin reached its maximum, whereas basin rifting terminated afterwards.
DOI: 10.6084/m9.figshare.5559070
title: Early Cretaceous rift-related volcanism in the Songliao Basin, NE China – A geochemical study

description: Following the amalgamation of the Siberian and North China Cratons, NE China, as part of the Central Asian Orogenic Belt (CAOB), underwent Late Mesozoic lithospheric extension that was associated with volcanic activity. The Songliao Basin is the most important rift structure formed during these processes and contains voluminous volcanic rocks interlayered with sedimentary infill. Mafic-to-intermediate lavas are associated with felsic ones. This study focusses on the geochemical compositions of the less-widespread Early Cretaceous mafic-to-intermediate lavas in the Songliao Basin and compares them with the more abundant felsic rocks. Two mafic-to-intermediate magma series, one with alkaline and the other with sub-alkaline affinity, were identified. High MgO and Cr contents, low Th/Nb and La/Nb ratios, and variable but depleted Nd isotope compositions indicate that both magma suites were most likely formed by the melting of enriched upper mantle sources. Sub-alkaline mafic-to-intermediate rocks and I-type rhyolites define a co-genetic magma series. This rock suite was produced by the melting of subduction-modified lithospheric mantle and subsequent magma evolution as well as crustal melting during lithospheric extension. Alkaline mafic-to-intermediate rocks and A-type rhyolites form another co-genetic magma suite that was produced under within-plate conditions from an OIB-type mantle source, supposed to be the heterogeneous shallow asthenosphere and/or the lower lithosphere. Decompression partial melting of this mantle source requires a relatively thin lithosphere. The development of alkaline mafic rocks and A-type rhyolites as typical bimodal volcanic assemblage reflects that lithospheric thinning below the Songliao Basin reached its maximum, whereas basin rifting terminated afterwards.
DOI: 10.6084/m9.figshare.18666434.v1
title: An improved plant CRISPR-Cas9 system for generating <i>Cas9</i>-free multiplex mutants

description: CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)-Cas9 mediated gene editing systems have been used in a variety of organisms, including plants. This system can efficiently edit target genes to generate mutants, especially multiplex mutants, which are invaluable genetic materials for gene functional studies. Although the use of traditional hybridization technology to construct multiplex mutants has been widely used in plant research, the complex screening and identification, long construction cycle and other problems have always troubled researchers. Therefore, in the current plant science research, the use of CRISPR-Cas9 mediated multiplex genome editing to construct multiplex mutants has become a mainstream technology. Here, we designed an improved plant CRISPR-Cas9 mediated multiplex genome vector system. The In-fusion cloning technology was selected to conveniently assemble multiple tandem <i>sgRNA</i> (<i>Single-guide RNA</i>) expression frames. In this system, <i>Cas9</i>-free plants can be easily selected by examining mCherry fluorescence in T<sub>2</sub> transgenic plants. By using this system, <i>Cas9</i>-free homozygous triple mutant was obtained, demonstrating the availability of our system.
DOI: 10.6084/m9.figshare.21285894
title: Additional file 5 of Activation function 1 of progesterone receptor is required for progesterone antagonism of oestrogen action in the uterus

description: Additional file 5. 901 Common genes between estrogen-regulated in the OVX WT and dysregulated in the AF_FFF GD4.5.
DOI: 10.6084/m9.figshare.8180684.v3
title: RETRACTED ARTICLE: Long noncoding RNA MAGI1-IT1 promoted invasion and metastasis of epithelial ovarian cancer via the miR-200a/ZEB axis

description: We, the Editors and Publisher of the journal <i>Cell Cycle</i>, have retracted the following article: Hao Gao, Xiaofeng Li, Guangxi Zhan, Yong Zhu, Jing Yu, Jiapo Wang, Li Li, Weimin Wu, Na Liu and Xiaoqing Guo. Long noncoding RNA MAGI1-IT1 promoted invasion and metastasis of epithelial ovarian cancer via the miR-200a/ZEB axis. Cell Cycle. 2019;18(12):1393-1406. doi: 10.1080/15384101.2019.1618121 Since publication, concerns have been raised about the integrity of the data in the article. When approached for an explanation, the authors have been unable to fully address the concerns raised and have not been able to provide their original data in the appropriate format. As verifying the validity of published work is core to the integrity of the scholarly record, we are therefore retracting the article. The corresponding author listed in this publication has been informed. The authors do not agree with the retraction. We have been informed in our decision-making by our policy on publishing ethics and integrity and the COPE guidelines on retractions. The retracted article will remain online to maintain the scholarly record, but it will be digitally watermarked on each page as ‘Retracted’.
DOI: 10.6084/m9.figshare.7132157
title: Excitonically renormalised coupled-cluster theory

description: A variant of coupled-cluster theory is described here, wherein the degrees of freedom are fluctuations of fragments between internally correlated states. The effects of intra-fragment correlation on the inter-fragment interaction are pre-computed and permanently folded into an effective Hamiltonian, thus avoiding redundant evaluations of local relaxations associated with coupled fluctuations. A companion article shows that a low-scaling step may be used to cast the electronic Hamiltonians of real systems into the form required. Two proof-of-principle demonstrations are presented here for non-covalent interactions. One uses harmonic oscillators, for which accuracy and algorithm structure can be carefully controlled in comparisons. The other uses small electronic systems (Be atoms) to demonstrate compelling accuracy and efficiency, also when inter-fragment electron exchange and charge transfer must be handled. Since the cost of the global calculation does not depend directly on the correlation models used for the fragments, this should provide a way to incorporate difficult electronic structure problems into large systems. This framework opens a promising path for building tunable, systematically improvable methods to capture properties of systems interacting with a large number of other systems. The extension to excited states is also straightforward.
DOI: 10.6084/m9.figshare.20761526.v1
title: Additional file 4 of Maternal obesity alters methylation level of cytosine in CpG island for epigenetic inheritance in fetal umbilical cord blood

description: Additional file 4: Table S4. DMR-related genes between the normal weight control group and overweight/obese group
DOI: 10.6084/m9.figshare.20761526
title: Additional file 4 of Maternal obesity alters methylation level of cytosine in CpG island for epigenetic inheritance in fetal umbilical cord blood

description: Additional file 4: Table S4. DMR-related genes between the normal weight control group and overweight/obese group
DOI: 10.6084/m9.figshare.7132157.v1
title: Excitonically renormalised coupled-cluster theory

description: A variant of coupled-cluster theory is described here, wherein the degrees of freedom are fluctuations of fragments between internally correlated states. The effects of intra-fragment correlation on the inter-fragment interaction are pre-computed and permanently folded into an effective Hamiltonian, thus avoiding redundant evaluations of local relaxations associated with coupled fluctuations. A companion article shows that a low-scaling step may be used to cast the electronic Hamiltonians of real systems into the form required. Two proof-of-principle demonstrations are presented here for non-covalent interactions. One uses harmonic oscillators, for which accuracy and algorithm structure can be carefully controlled in comparisons. The other uses small electronic systems (Be atoms) to demonstrate compelling accuracy and efficiency, also when inter-fragment electron exchange and charge transfer must be handled. Since the cost of the global calculation does not depend directly on the correlation models used for the fragments, this should provide a way to incorporate difficult electronic structure problems into large systems. This framework opens a promising path for building tunable, systematically improvable methods to capture properties of systems interacting with a large number of other systems. The extension to excited states is also straightforward.
DOI: 10.6084/m9.figshare.14471681.v1
title: Additional file 8 of Isolation and genomic characterization of five novel strains of Erysipelotrichaceae from commercial pigs

description: Additional file 8: Table S1. Accession numbers, genome coverage and size, and the pathway of GalNAc of the strains downloaded from NCBI.
DOI: 10.6084/m9.figshare.20761555
title: Additional file 4 of Strain-level profiling with picodroplet microfluidic cultivation reveals host-specific adaption of honeybee gut symbionts

description: Additional file 4: Dataset S1. Information of metagenome-assembled genomes.
DOI: 10.6084/m9.figshare.20763669.v1
title: Repression of linc01555 up-regulates angiomotin-p130 via the microRNA-122-5p/clic1 axis to impact vasculogenic mimicry-mediated chemotherapy resistance in small cell lung cancer

description: Long non-coding ribonucleic acid 01555 (linc01555) is a brand-new long non-coding RNA (lncRNA) that acts a carcinogenic function in various cancers. However, its role in small cell lung cancer (SCLC) is uncertain. This research was to figure out the role of linc01555 in cisplatin (DDP) resistance of SCLC cells and its possible latent mechanism. After establishment of the resistant sub-strain H446/DDP or DMS-53/DDP, detection of linc01555, microRNA (miR)-122-5p and CLICl was done in the H446/DDP or DMS-53/DDP cell line. After intervention, cell biological functions were determined, as well as tube formation ability. The detection of angiomotin (Amot)-p130 and the validation of the regulatory mechanism were performed. Furthermore, tumor xenografts were applied in nude mice to evaluate the effect of linc01555 on DDP resistance in SCLC in vivo. Linc01555 was elevated in SCLC tissues and cells, and in H446/DDP cells or DMS-53/DDP vs. its parental cells; Restraining linc01555 or elevating miR-122-5p repressed the proliferation and metastasis of H446/DDP or DMS-53/DDP cells and vasculogenic mimicry (VM) formation. CLIC1 mediated miR-122-5p to influence the occurrence and development of SCLC. Linc01555 competitively combined with miR-122-5p, which targeted CLIC1. Refrained linc01555 elevated Amot-p130 via the miR-122-5p/CLIC1 axis. Reduced linc01555 refrained tumor growth and DDP resistance in vivo.In short, linc01555 may cause changes in DDP resistance via miR-122-5p/CLIC1 in SCLC. The finding may offer drug targets for SCLC resistance.
DOI: 10.25625/rbjibu/0lpfvh
title: 2Santou-Dachang.mp4

description: Santou singt vor dem Haus des Dorfkomitees Wangqiao, Musik: „Da Yangge“-Melodie, Traditionelle chinesische Musikinstrumente, aufgenommen am 16.02.2013.
DOI: 10.25625/rbjibu/vlkgos
title: YANGGE_Dissertation_Du_readme.txt

description: Readme Datensatzsammlung "Feldforschungsvideos fuer Kulturerbe, Institutionalisierung und Nationalidentitaet. Yangge nach der chinesischen Kulturrevolution (1966-1976)"
DOI: 10.14473/csda/5uk7a9
title: Korupce ve vybraných sektorech v České republice a možnosti jejího snížení 2023

description: Hlavním cílem projektu bylo pomocí poznatků ze sociologie, politologie, práva a kriminologie určit rozsah a formy korupce ve vybraných společenských sektorech v České republice a doporučit konkrétní opatření, která by mohla korupci v jednotlivých sektorech snížit. Poznatky z tohoto projektu budou sloužit aplikačnímu garantovi pro budoucí strategii vládního boje proti korupci. Zejména napomohou k určení nejproblematičtějších oblastí a k navržení, případně zpřesnění, konkrétních protikorupčních úkolů, ať už legislativní nebo nelegislativní povahy. Druhým cílem projektu bylo předložit sadu doporučených nástrojů pro replikovatelné efektivní a validní měření přímé a nepřímé zkušenosti s korupcí ve společenských sektorech.
DOI: 10.14473/csda/5uk7a9/ultoeo
title: TA ČR_dotaznik_korupce.docx

description: Integrovaný dotazník k celému výzkumu - úvodní a závěrečná část byly pro všechny sektory totožné, střední část se pro každý ze zkoumaných sektorů liši..
DOI: 10.14473/csda/5uk7a9/5kxgvb
title: vz data_archiv_codebook.tab

description: Datový soubor popisující oblast veřejných zakázek spolu s codebookem.
DOI: 10.14473/csda/5uk7a9/tdccql
title: sport data_archiv_codebook.xlsx

description: Datový soubor popisující oblast sportu spolu s codebookem.
DOI: 10.14473/csda/5uk7a9/jkm2du
title: D_CSDA00321.pdf

description: TA ČR_Dotazník výzkumu Korupce
DOI: 10.14473/csda/5uk7a9/ls3lmj
title: CB_CSDA00321_vz.tab

description: Codebook a data v oblasti veřejných zakázek
DOI: 10.14473/csda/5uk7a9/nd9wmd
title: CB_CSDA00321_exekuce.tab

description: Codebook a data v oblasti exekucí
DOI: 10.14473/csda/5uk7a9/ehxlwp
title: CB_CSDA00321_sport.tab

description: Codebook a data v oblasti sportu
DOI: 10.14473/csda/5uk7a9/69nccl
title: CB_CSDA00321_zdravotnictvi.tab

description: Codebook a data v oblasti zdravotnictví
DOI: 10.14473/csda/5uk7a9/fsbjyi
title: CB_CSDA00321_uzemni data.tab

description: Codebook a data v oblasti územního a stavebního řízení
DOI: 10.14473/csda/5uk7a9/g83eov
title: CB_CSDA00321_skolstvi.tab

description: Codebook a data v oblasti školství a vědy
DOI: 10.6084/m9.figshare.24607167
title: Plant spectral diversity from high-resolution multispectral imagery detects functional diversity patterns in coastal dune communities

description: The .zip file contains all datasets necessary to replicate the analyses found in the paper titled "<b>Plant spectral diversity from high-resolution multispectral imagery detects functional diversity patterns in coastal dune communities</b>".(DOI 10.1111/jvs.13239)Authors: <i>Eleonora Beccari, Carlos Pérez Carmona, Enrico Tordoni, Francesco Petruzzellis, Davide Martinucci, Giulia Casagrande, Nicola Pavanetto, Duccio Rocchini, Marco D'Antraccoli, Daniela Ciccarelli & Giovanni Bacaro</i>Analyses are described in the main text of the paper. Further details regarding the spectral and functional samplings can be found in Appendix S1 available on the journal website.
DOI: 10.6084/m9.figshare.20761558
title: Additional file 5 of Strain-level profiling with picodroplet microfluidic cultivation reveals host-specific adaption of honeybee gut symbionts

description: Additional file 5: Dataset S2. Reports for homologous gene cluster analysis of the novel cluster from Bifidobacterium.
DOI: 10.6084/m9.figshare.20761558.v1
title: Additional file 5 of Strain-level profiling with picodroplet microfluidic cultivation reveals host-specific adaption of honeybee gut symbionts

description: Additional file 5: Dataset S2. Reports for homologous gene cluster analysis of the novel cluster from Bifidobacterium.
DOI: 10.6084/m9.figshare.20761561
title: Additional file 6 of Strain-level profiling with picodroplet microfluidic cultivation reveals host-specific adaption of honeybee gut symbionts

description: Additional file 6: Dataset S3. Reports for homologous gene cluster analysis of Lactobacillus panisapium.
DOI: 10.6084/m9.figshare.7132238
title: Additional file 2: of Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew

description: Table S1. Transposable elements (TEs) in the assembled genome of each powdery mildew biotype. Table S2. Distribution of genes controlling proliferation of repetitive sequences in the PM genomes. Table S3. Percentage of PM genes with homologs in other fungi. Table S4. Ascomycete core genes missing in each PM biotype and three other obligate biotrophic fungi. Table S5. Gene clusters grouped by all genes from the eight powdery mildew genomes. Table S6. Grouping of protein-encoding genes of eight sequenced PM genomes. Table S7. Number of gene clusters with no homologs outside PM genomes. Table S8. Top 100 biological processes defined by the 3819 core genes from eight PM genomes via Gene Ontology analysis. Table S9. Genes involved in secondary metabolism from eight dicot PM genomes. Table S10. Genes encoding carbohydrate-active enzymes (CAZy) in eight PM genomes. Table S11. Coding nucleotide and the corresponding amino acid sequences of genes predicted to encode secreted proteins or CSEPs from four dicot PM biotypes. Table S12. RNase-like genes in the eight PM genomes. (XLSX 1897 kb)
DOI: 10.6084/m9.figshare.21830283
title: <strong>Revealing floristic and structural variation in regenerating areas in the Cerrado-Caatinga transition: An analysis across seres. (Supplementary data) </strong>

description:   
Dado brutos coletados em campo, tabelas com lista de espécies para cada área, mapa de vegetação da área de estudo, imagens das áreas nos diferentes estágios sucessionais no período seco e chuvoso, e KML das parcelas. 
 
- Trees in the two areas.xlsx  (Dados brutos coletados em campo, contendo: parcelas, espécies, famílias, e PAP e altura de cada indivíduo arbóreo). 
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- Regenerating the two areas.xlsx (Dados brutos coletados em campo, contendo: parcelas, espécies, famílias, e PAP e altura de cada indivíduo do estrato regenerante).
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 - Figure 1.tif (Localização da área de estudo, plots da coleta dos dados e cobertura vegetal no Estado do Piauí, Brasil). 
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- Plots.kml (KML com a localização das parcelas via Google Earth). 
<br>
- Figure 2.tif (Áreas de estudo durante a estação seca e chuvosa, setembro e março, região de Chapadas, Piauí. (a-b crescimento antigo; c-d 10 anos de regeneração, e-f 25 anos de regeneração).
<br>
- Table1.docx (Famílias, espécies, número de indivíduos e área basal de cada espécie no estrato arbóreo para crescimento antigo, regeneração de 10 anos e regeneração de 25 anos, região de Chapadas, Piauí. (N- Número de indivíduos; BA- Área basal m2)).
<br>
- Table2.docx (Famílias, espécies, número de indivíduos e área basal para cada espécie no estrato regenerante para áreas de crescimento antigo, regeneração de 10 anos e regeneração de 25 anos, região de Chapadas, Piauí. (N- Número de indivíduos; BA- Área basal m2)).
<br>
- Table3.docx (Descritores quantitativos para o estrato arbóreo e regenerante para crescimento antigo, regeneração de 10 anos e regeneração de 25 anos, região de Chapadas, Piauí). 
<br>
<br>
<br>
DOI: 10.6084/m9.figshare.21830283.v3
title: Arbóreas e regenerantes duas áreas.xlsx

description:   
Dado brutos coletados em campo, tabelas com lista de espécies para cada área e mapa de vegetação da área de estudo.