cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23153741
title: Seasonal data of biogeochemistry and zooplankton from station in Nuup Kangerlua (GF10) and Ameralik (AM10)

description: Seasonal dataset of biogeochemistry and zooplankton <br> <strong>File 1: BiogeochemicalDataset</strong> Dataset on biogeochemical data collected by CTD (Seabird 19plus) and Niskin sampling in two stations in Nuup Kangerlua (GF10) and Ameralik (AM10) <br> File Description Depth: Depth of the sample in meter (m) Date: Date of collection in YYYYMMDD format Station: Station where the data is collected Latitude: Latitude of the station Longitude: Longitude of the station Temperature: Temperature in °C Salinity: Salinity in PSU Chla: Chlorophyll a concentration in µg L-1 NOX: Nitrate (and nitrite) concentration in µM Total Plankton: Total phytoplankton counts in cells per mL Picoplankton counts: Total picoplankton counts in cells per mL Bacteria counts: Total Bacteria counts in bacteria per mL HNF counts: Total heterotrophic nanoflagelates counts in inviduals per mL <br> <br> <strong>File 2: ZooplanktonDataset</strong> Dataset on zooplankton community collected by WP2 net using vertical net tows in two stations in Nuup Kangerlua (GF10) and Ameralik (AM10) <br> File Description Station: Station name (AM10 or GF10) Date: Sampling date in YYYYMMDD format Depth: Depth of the net tow in meter (m) Net: Number of net as duplicate or triplicate nets are collected Latitude: Latitude in ° Longitude: Longitude in ° Species: Zooplankton species as identified by Arctic Agency Stage: Zooplankton stage as identified by Arctic Agency Total: Total amounts of species identified in sample L1: Length of individual measured in µm L2: Length of individual measured in µm L3: Length of individual measured in µm L4: Length of individual measured in µm L5: Length of individual measured in µm L6: Length of individual measured in µm L7: Length of individual measured in µm L8: Length of individual measured in µm L9: Length of individual measured in µm L10: Length of individual measured in µm Mean Length: Mean length of 10 individuals in µm Area net: Area of the WP2 net used in the study in m2 Abundance: Abundance of individuals measured in individuals per m3 Biomass: Biomass calculated using standard conversions in mg C per m3
DOI: 10.5281/zenodo.7968252
title: Data sharing

description: Data sharing
DOI: 10.5281/zenodo.7968251
title: Data sharing

description: Data sharing
DOI: 10.5066/p9zg1y72
title: Impounded and tidal wetland plant diversity and composition across spatial scales, San Francisco Bay-Delta, California, USA (2016-2018)

description: These datasets provide information on plant alpha, beta, and gamma diversity, and plant species abundance at several spatial scales for tidal wetlands along a salinity gradient in the San Francisco Bay-Delta and an impounded brackish wetland complex in Suisun Marsh, California. Files include diversity metrics calculated at the patch, site, and region scales, average percent cover of wetland dominant plants at the patch scale, and average percent cover of all wetland plants at the site scale. These data support the following paper: Jones, S.F., Janousek, C.N., Casazza, M.L., Takekawa, J.Y. and Thorne, K.M., 2021. Seasonal impoundment alters patterns of tidal wetland plant diversity across spatial scales. Ecosphere, 12(2), p.e03366.
DOI: 10.5281/zenodo.7968274
title: POES/MetOp Daily-Averaged Precipitating Electron Fluxes

description: Daily-averaged precipitating electron fluxes as a function of energy and L-shell from the MPE data set by Pettit et al., 2021.
DOI: 10.5281/zenodo.7968273
title: POES/MetOp Daily-Averaged Precipitating Electron Fluxes

description: Daily-averaged precipitating electron fluxes as a function of energy and L-shell from the MPE data set by Pettit et al., 2021.
DOI: 10.5281/zenodo.7968234
title: TMI cheese metagenomics sourmash output files

description: Sourmash output files from signature sketches, compare, gather, and taxonomy of time-series cheese metagenomes generated using both short- and long-read sequencing technologies. Originally generated as part of the pub "Paired long- and short-read metagenomics of cheese rind microbial communities at multiple time points". Analysis code of this data provided on Github at https://github.com/Arcadia-Science/metagenomics-of-cheese-rind-microbiomes. To directly analyze this data, download and unzip the tarball. Clone the Github repository and point to the 2023-05-23-TMI-processed-data directory within a project using the `scripts/TMI-sourmash-explore.R` script. Install the packages used in the script if necessary.
DOI: 10.5281/zenodo.7968233
title: TMI cheese metagenomics sourmash output files

description: Sourmash output files from signature sketches, compare, gather, and taxonomy of time-series cheese metagenomes generated using both short- and long-read sequencing technologies. Originally generated as part of the pub "Paired long- and short-read metagenomics of cheese rind microbial communities at multiple time points". Analysis code of this data provided on Github at https://github.com/Arcadia-Science/metagenomics-of-cheese-rind-microbiomes. To directly analyze this data, download and unzip the tarball. Clone the Github repository and point to the 2023-05-23-TMI-processed-data directory within a project using the `scripts/TMI-sourmash-explore.R` script. Install the packages used in the script if necessary.
DOI: 10.25345/c50863g3h
title: MassIVE MSV000092030 - Purified trichomonas proteasome denaturing gel digest MV151 gel
title: Purified trichomonas proteasome was incubated overnight with MV151, imaged, and bands were excised for proteomics. Files searched against trichomonas vaginalis proteome (uniprot 412133). 7 = band A, 8 = band B, 9 = band C.
DOI: 10.5281/zenodo.7968333
title: Norwegian road shapefile

description: Shapefiles for plotting Norwegian road network in Python.
DOI: 10.5281/zenodo.7968332
title: Norwegian road shapefile

description: Shapefiles for plotting Norwegian road network in Python.
DOI: 10.6084/m9.figshare.3761562.v2595
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.7552898
title: A synthesis of hydroclimatic, ecological, and socioeconomic data for transdisciplinary research in the Mekong

description: Various climate, hydro-meteorological, ecological, and socio-economic datasets are synthesized and made available for the Mekong River Basin. The sources of each dataset were also mentioned in the associated readme file. Dam data, inundation data, and Cambodia census data can be made available upon request to the authors.
DOI: 10.5281/zenodo.7622998
title: A synthesis of hydroclimatic, ecological, and socioeconomic data for transdisciplinary research in the Mekong

description: Various climate, hydro-meteorological, ecological, and socio-economic datasets are synthesized and made available for the Mekong River Basin. The sources of each dataset are also mentioned in the associated readme file. Dam attribute data, inundation data, and Cambodia census data can be made available upon request to the authors.
DOI: 10.5281/zenodo.7803254
title: A synthesis of hydroclimatic, ecological, and socioeconomic data for transdisciplinary research in the Mekong

description: Various climate, hydro-meteorological, ecological, and socio-economic datasets are synthesized and made available for the Mekong River Basin. The sources of each dataset are also mentioned in the associated readme file. Dam attribute data, inundation data, and Cambodia census data can be made available upon request to the authors.
DOI: 10.5281/zenodo.7552897
title: A synthesis of hydroclimatic, ecological, and socioeconomic data for transdisciplinary research in the Mekong

description: Various climate, hydro-meteorological, ecological, and socio-economic datasets are synthesized and made available for the Mekong River Basin. The sources of each dataset are also mentioned in the associated readme file. Dam attribute data, inundation data, and Cambodia census data can be made available upon request to the authors.
DOI: 10.5281/zenodo.7968319
title: Climatic and Anthropogenic Controls on Groundwater Dynamics in the Mekong River Basin

description: Datasets for the paper (Climatic and Anthropogenic Controls on Groundwater Dynamics in the Mekong River Basin)- Observed streamflow data from Mekong River Commission (MRC) Groundwater observations from Tiwari et al., (2023; Sci. Data) Groundwater simulation outputs from CLM5 for Mekong River Basin.
DOI: 10.5281/zenodo.7968318
title: Climatic and Anthropogenic Controls on Groundwater Dynamics in the Mekong River Basin

description: Datasets for the paper (Climatic and Anthropogenic Controls on Groundwater Dynamics in the Mekong River Basin)- Observed streamflow data from Mekong River Commission (MRC) Groundwater observations from Tiwari et al., (2023; Sci. Data) Groundwater simulation outputs from CLM5 for Mekong River Basin.
DOI: 10.5281/zenodo.7968397
title: Ficha de coleta de dados dos pacientes oncológicos atendidos em cuidados paliativos domiciliares

description: A ficha de coleta de dados dos pacientes oncológicos atendidos em cuidados paliativos domiciliares foi elaborada a partir de reuniões do grupo gestor do serviço da Assistência Domiciliar de uma unidade de cuidados paliativos oncológicos no Rio de Janeiro. Utilizou como base outros produtos elaborados pelo serviço: protocolo de avaliação e classificação de risco para determinar prioridade de atendimento dos pacientes em cuidados paliativos domiciliares; fluxograma para guiar o processo de classificação de risco dos pacientes oncológicos em cuidados paliativos domiciliares.
DOI: 10.5281/zenodo.7968396
title: Ficha de coleta de dados dos pacientes oncológicos atendidos em cuidados paliativos domiciliares

description: A ficha de coleta de dados dos pacientes oncológicos atendidos em cuidados paliativos domiciliares foi elaborada a partir de reuniões do grupo gestor do serviço da Assistência Domiciliar de uma unidade de cuidados paliativos oncológicos no Rio de Janeiro. Utilizou como base outros produtos elaborados pelo serviço: protocolo de avaliação e classificação de risco para determinar prioridade de atendimento dos pacientes em cuidados paliativos domiciliares; fluxograma para guiar o processo de classificação de risco dos pacientes oncológicos em cuidados paliativos domiciliares.
DOI: 10.26093/cds/vizier.18450172
title: LAE candidates around bright Ly{alpha} blobs

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Discovery of a protocluster associated with a Ly{alpha} blob pair at z = 2.3.' (bibcode: 2017ApJ...845..172B)
DOI: 10.5281/zenodo.7968420
title: Database analysed in the paper "Differential Item Functioning of the Mini-BESTest Balance Measure: A Rasch Analysis Study"

description: Database analysed in the paper <em>"Differential Item Functioning of the Mini-BESTest Balance Measure: A Rasch Analysis Study"</em> published in the Int J Environ Res Public Health, 2023 Mar 15;20(6):5166. doi: 10.3390/ijerph20065166 The file uploaded is the specification file for the first analysis run with Facets 3.84.0. Data can be found at the end of the specification file.
DOI: 10.5281/zenodo.7968419
title: Database analysed in the paper "Differential Item Functioning of the Mini-BESTest Balance Measure: A Rasch Analysis Study"

description: Database analysed in the paper <em>"Differential Item Functioning of the Mini-BESTest Balance Measure: A Rasch Analysis Study"</em> published in the Int J Environ Res Public Health, 2023 Mar 15;20(6):5166. doi: 10.3390/ijerph20065166 The file uploaded is the specification file for the first analysis run with Facets 3.84.0. Data can be found at the end of the specification file.
DOI: 10.5066/p9y88iou
title: Characteristics of Sites Sampled for eDNA of Amphibians in Mendocino County, California, 2016

description: Stream-obligate amphibians are important indicators of ecosystem health in the Pacific Northwest, but distributional information to improve forest management is lacking in many regions. We analyzed archived DNA extracted from water samples in 60 pools within streams in private timberlands in Mendocino County, California, for 3 California Species of Special Concern - Coastal Tailed Frogs (Ascaphus truei), Foothill Yellow-legged Frogs (Rana boylii), and Southern Torrent Salamanders (Rhyacotriton variegatus) - to better understand their distributions in the region. These data support the following publication: Brian J Halstead, Caren S Goldberg, Robert B Douglas, Patrick M Kleeman, and David W Ulrich "OCCURRENCE OF A SUITE OF STREAM-OBLIGATE AMPHIBIANS IN TIMBERLANDS OF MENDOCINO COUNTY, CALIFORNIA, EXAMINED USING ENVIRONMENTAL DNA," Northwestern Naturalist 101(3), 194-209, (31 December 2020). https://doi.org/10.1898/1051-1733-101.3.194
DOI: 10.5281/zenodo.7968442
title: amazona_farinosa_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7968441
title: amazona_farinosa_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.6084/m9.figshare.23154326
title: Transcripts

description: This study explored the utilisation of traditional medicine among patients living with breast cancer.
DOI: 10.6084/m9.figshare.23154827.v1
title: mammalianFacialChromatinData

description: BigWig files from H3K27ac ChIP-seq and ATAC-seq datasets from the craniofacial regions of the human and mouse embryos. Human samples were generated using genome version Hg38.
DOI: 10.25345/c5vh5ct8h
title: MassIVE MSV000092031 - Simultaneous neuronal expression of human amyloid-beta and Tau genes drives global phenotypic and multi-omic changes in C. elegans
title: Alzheimer's disease and Alzheimer's related diseases (ADRD) represent prevalent age-related neurodegenerative disorders characterized by the accumulation of amyloid-beta (A-beta) plaques and Tau neurofibrillary tangles. Despite numerous failed clinical trials, the intricate interplay between A-beta and Tau proteins necessitates further investigation. The nematode Caenorhabditis elegans serves as an invaluable model organism for studying aging and neurodegenerative diseases. In this study, we performed an unbiased systems analysis of a C. elegans strain expressing both A-beta and Tau proteins in neurons. Intriguingly, even at an early stage of adulthood, we observed reproductive impairments and mitochondrial dysfunction consistent with substantial disruptions in mRNA transcript abundance, protein solubility, and metabolite levels. Notably, the simultaneous expression of these two neurotoxic proteins exhibited a synergistic effect, leading to accelerated aging in the model organism. Our comprehensive findings shed light on the intricate relationship between normal aging processes and the etiology of ADRD, offering critical insights into potential therapeutic strategies.
DOI: 10.6084/m9.figshare.23155010
title: Data for "Increased Melting of Marine-Terminating Glaciers by Sediment-Laden Plumes"

description: Experimental measurements and analysis used to calculate parameters and produce figures for publication. Included are a text file describing the data contents and equivalent .ipynb and .py files containing the analysis and plotting scripts.
DOI: 10.34943/fe8ef0f3-ad9e-42ff-921e-f8236e02ed57
title: Barkley Upper Slope Broadband Seismometer Deployed 2009-09-08

description: The Guralp CMG-IT Broadband Seismometer 2218 was deployed on 2009-09-08 at Barkley Upper Slope. Upper Slope is a location within Barkley Canyon, which is located on the upper continental slope. This device is a Broadband Seismometer. Broadband Seismometers measure seismic waves over a broad frequency range depending on the device (e.g. 0.00278 Hz - 250 Hz). A broadband seismometer facilitates measurement of seismic events in the widest frequency band possible. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.23154827.v2
title: mammalianFacialChromatinData

description: BigWig files from H3K27ac ChIP-seq and ATAC-seq datasets from the craniofacial regions of the human and mouse embryos. Human samples were generated using genome version Hg38.
DOI: 10.5281/zenodo.7960623
title: Scanorama datasets in .h5ad

description: All of the data used in the original paper "Hie, B., Bryson, B. & Berger, B. Efficient integration of heterogeneous single-cell transcriptomes using Scanorama. <em>Nat Biotechnol</em> <strong>37</strong>, 685-691 (2019)" in .h5ad.
DOI: 10.5281/zenodo.7968268
title: Scanorama datasets in .h5ad

description: All of the data used in the original paper "Hie, B., Bryson, B. & Berger, B. Efficient integration of heterogeneous single-cell transcriptomes using Scanorama. <em>Nat Biotechnol</em> <strong>37</strong>, 685-691 (2019)" in .h5ad.
DOI: 10.5281/zenodo.7968481
title: Scanorama datasets in .h5ad

description: All of the data used in the original paper "Hie, B., Bryson, B. & Berger, B. Efficient integration of heterogeneous single-cell transcriptomes using Scanorama. <em>Nat Biotechnol</em> <strong>37</strong>, 685-691 (2019)" in .h5ad.
DOI: 10.5281/zenodo.7960622
title: Scanorama datasets in .h5ad

description: All of the data used in the original paper "Hie, B., Bryson, B. & Berger, B. Efficient integration of heterogeneous single-cell transcriptomes using Scanorama. <em>Nat Biotechnol</em> <strong>37</strong>, 685-691 (2019)" in .h5ad.
DOI: 10.5281/zenodo.7968485
title: Scanorama datasets in .h5ad

description: All of the data used in the original paper "Hie, B., Bryson, B. & Berger, B. Efficient integration of heterogeneous single-cell transcriptomes using Scanorama. <em>Nat Biotechnol</em> <strong>37</strong>, 685-691 (2019)" in .h5ad.
DOI: 10.6084/m9.figshare.20438697.v1
title: LUD2015-005 scRNA-seq dataset (processed, w/ FastMNN integration)

description: Seurat object of LUD2015-005 upper GI cell atlas (EAC, ESCC, Barrett's esophagus, and normal GI tissues) from Carroll et al. 2023: "Tumor monocyte content predicts immunochemotherapy outcomes in esophageal adenocarcinoma". FastMNN was used to integrate between two batches related to preservation prior to dissociation (fresh dissociation and dissociation of slow-frozen biopsies). <br> <br>
DOI: 10.6084/m9.figshare.20438697
title: LUD2015-005 scRNA-seq dataset (processed, w/ FastMNN integration)

description: Seurat object of LUD2015-005 upper GI cell atlas (EAC, ESCC, Barrett's esophagus, and normal GI tissues) from Carroll et al. 2023: "Tumor monocyte content predicts immunochemotherapy outcomes in esophageal adenocarcinoma". FastMNN was used to integrate between two batches related to preservation prior to dissociation (fresh dissociation and dissociation of slow-frozen biopsies). <br> <br>
DOI: 10.6084/m9.figshare.20438691
title: LUD2015-005 scRNA-seq dataset (processed, w/o FastMNN integration)

description: Seurat object of LUD2015-005 upper GI cell atlas (EAC, ESCC, Barrett's esophagus, and normal GI tissues) from Carroll et al. 2023: "Tumor monocyte content predicts immunochemotherapy outcomes in esophageal adenocarcinoma". No batch integration was conducted on this object- use this version for visualization and analysis of expression data.
DOI: 10.6084/m9.figshare.20438691.v1
title: LUD2015-005 scRNA-seq dataset (processed, w/o FastMNN integration)

description: Seurat object of LUD2015-005 upper GI cell atlas (EAC, ESCC, Barrett's esophagus, and normal GI tissues) from Carroll et al. 2023: "Tumor monocyte content predicts immunochemotherapy outcomes in esophageal adenocarcinoma". No batch integration was conducted on this object- use this version for visualization and analysis of expression data.
DOI: 10.6084/m9.figshare.23154827.v3
title: mammalianFacialChromatinData

description: BigWig files from H3K27ac ChIP-seq and ATAC-seq datasets from the craniofacial regions of the human and mouse embryos. Human samples were generated using genome version Hg38.
DOI: 10.6084/m9.figshare.20438649
title: LUD2015-005 scRNA-seq dataset (unprocessed/pre-QC filtering)

description: Seurat object of LUD2015-005 upper GI cell atlas (EAC, ESCC, Barrett's esophagus, and normal GI tissues) from Carroll et al. 2023: "Tumor monocyte content predicts immunochemotherapy outcomes in esophageal adenocarcinoma". This version contains the unfiltered output of filtered_feature_bc_matrix from cellranger, i.e. without the additional QC filtering conducted in our analysis and in the other two Seurat objects shared with this publication. This allows users to download the Cell Ranger output in Seurat format and implement less restrictive QC thresholds prior to their own reanalysis, if desired.
DOI: 10.6084/m9.figshare.20438649.v1
title: LUD2015-005 scRNA-seq dataset (unprocessed/pre-QC filtering)

description: Seurat object of LUD2015-005 upper GI cell atlas (EAC, ESCC, Barrett's esophagus, and normal GI tissues) from Carroll et al. 2023: "Tumor monocyte content predicts immunochemotherapy outcomes in esophageal adenocarcinoma". This version contains the unfiltered output of filtered_feature_bc_matrix from cellranger, i.e. without the additional QC filtering conducted in our analysis and in the other two Seurat objects shared with this publication. This allows users to download the Cell Ranger output in Seurat format and implement less restrictive QC thresholds prior to their own reanalysis, if desired.
DOI: 10.5281/zenodo.7968516
title: Would you detour with me? Association between functional breed selection and social learning in dogs sheds light on elements of dog-human cooperation

description: Raw dataset for the research article. Dog Owner Consent form
DOI: 10.5281/zenodo.7968515
title: Would you detour with me? Association between functional breed selection and social learning in dogs sheds light on elements of dog-human cooperation

description: Raw dataset for the research article. Dog Owner Consent form
DOI: 10.6084/m9.figshare.23145383
title: SH3 and 3-helix bundles Molecular dynamics trajectories for large proteins

description: Additional data, trajectories of moleculad dynamics simulations of a medium sized proteins containing SH3-barrels and 3-helix bundles used to compare behaviour of motif inside the protein and when it is simulated autonomously
DOI: 10.6084/m9.figshare.23145383.v1
title: SH3 and 3-helix bundles Molecular dynamics trajectories for large proteins

description: Additional data, trajectories of moleculad dynamics simulations of a medium sized proteins containing SH3-barrels and 3-helix bundles used to compare behaviour of motif inside the protein and when it is simulated autonomously
DOI: 10.34740/kaggle/dsv/5767728
title: US counties COVID 19 dataset