cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15295685
title: Unlock the Walnut: How a Pectin-Rich Suture Tissue and Moisture-Driven Crack Formation Induce Shell Splitting and Facilitate Seed Germination

description: This dataset contains raw data presented and discussed in the paper:

Antreich, S.J., Xiao, N., Felhofer, M., Gierlinger, N. (2025) Unlock the Walnut: How a Pectin-Rich Suture Tissue and Moisture-Driven Crack Formation Induce Shell Splitting and Facilitate Seed Germination. Advanced Functional Materials. e10682. https://doi.org/10.1002/adfm.202510682

The excel-file shows raw data on cell size and swelling behavior of walnut shell and suture tissue as well as data on crack lenght from cycling humidity experiments. Tif-files show picture stacks of the dry state form cycling humidity experiment where cracks occured.

Raman spectra presented in the paper will be made available at MicrobioRaman at https://www.ebi.ac.uk/biostudies/microbioraman/studies. See also Lee et al. (2024), doi:10.1038/s41564-024-01656-3.
DOI: 10.15468/dl.c7dej7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa L.",
 "Country is Nauru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079740-250525065834625/datasets/export for details.
DOI: 10.15468/dl.tnf8cw
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa L.",
 "Country is Malta",
 "HasCoordinate is true"
 ]
}

 The dataset includes 25 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079739-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/838e8d53-e7ba-4306-a62c-6ba7a9428f13
title: Data underlying PhD thesis: AI in the Sky - Advancing Wildlife Survey Methods in Africa with Deep Learning and Aerial Imagery

description: This dataset supports the PhD research titled <em>“AI in the Sky: Advancing Wildlife Survey Methods in Africa with Deep Learning and Aerial Imagery”</em>. The research aims to improve wildlife monitoring through deep learning and remote sensing. It focuses on object detection and species counting based on aerial surveys over African wildlife reserves. The dataset includes the Aerial Elephant Dataset (AED) annotations, for which bounding boxes in standard VOC format were created to supplement the original point annotations, and an Antelope Dataset provided by African Parks in South Sudan under a research agreement. These annotations support the training and validation of deep learning models such as YOLO, RT-DETR, CenterNet, U-Net, and D2-Net. Supporting scripts for processing, tiling, annotation handling, quality control, and statistical analysis are included to ensure reproducibility.
DOI: 10.4121/838e8d53-e7ba-4306-a62c-6ba7a9428f13.v1
title: Data underlying PhD thesis: AI in the Sky - Advancing Wildlife Survey Methods in Africa with Deep Learning and Aerial Imagery

description: This dataset supports the PhD research titled <em>“AI in the Sky: Advancing Wildlife Survey Methods in Africa with Deep Learning and Aerial Imagery”</em>. The research aims to improve wildlife monitoring through deep learning and remote sensing. It focuses on object detection and species counting based on aerial surveys over African wildlife reserves. The dataset includes the Aerial Elephant Dataset (AED) annotations, for which bounding boxes in standard VOC format were created to supplement the original point annotations, and an Antelope Dataset provided by African Parks in South Sudan under a research agreement. These annotations support the training and validation of deep learning models such as YOLO, RT-DETR, CenterNet, U-Net, and D2-Net. Supporting scripts for processing, tiling, annotation handling, quality control, and statistical analysis are included to ensure reproducibility.
DOI: 10.5281/zenodo.15764921
title: PrediLnc: A Platform for disseminating lncRNA-disease associations.

description: Long non-coding RNAs (lncRNAs) play diverse and critical roles in gene regulation, chromatin organization, and various cellular processes. Elucidating lncRNA-disease associations is essential for uncovering novel therapeutic targets and understanding disease mechanisms. In this study, we present PrediLnc, a comprehensive platform designed to disseminate predictive insights generated by our model GARNet (Graph convolution Attention RNA Network using stack ensemble to predict LncRNA-disease associations).

GARNet integrates multi-level biological information, including lncRNA sequence features, disease ontology terms, associative data at the gene, miRNA, and protein levels, to generate robust predictions. The model architecture leverages autoencoders for dimensionality reduction, graph convolutional networks and self-attention mechanisms for capturing topological and contextual node information, and a stacked ensemble learning framework for final prediction. The ensemble includes five base classifiers: Logistic Regression, Support Vector Machine, Random Forest, Gradient Boosting, and Multi-Layer Perceptron, with a Random Forest serving as the meta-classifier.

GARNet achieves strong performance in stratified cross-validation and is available as both a web server and a standalone tool through PrediLnc (https://dhanjal-lab.iiitd.edu.in/predilnc.html). The platform's biological relevance has been validated through independent case studies, involving distinct lncRNAs and diseases, with predictions supported by evidence from over 500 PubMed studies, underscoring its reliability for the scientific community.

Keywords: long non-coding RNAs, lncRNA-disease association, disease ontology, deep learning, machine learning, GARNet, PrediLnc
DOI: 10.5281/zenodo.15764920
title: PrediLnc: A Platform for disseminating lncRNA-disease associations.

description: Long non-coding RNAs (lncRNAs) play diverse and critical roles in gene regulation, chromatin organization, and various cellular processes. Elucidating lncRNA-disease associations is essential for uncovering novel therapeutic targets and understanding disease mechanisms. In this study, we present PrediLnc, a comprehensive platform designed to disseminate predictive insights generated by our model GARNet (Graph convolution Attention RNA Network using stack ensemble to predict LncRNA-disease associations).

GARNet integrates multi-level biological information, including lncRNA sequence features, disease ontology terms, associative data at the gene, miRNA, and protein levels, to generate robust predictions. The model architecture leverages autoencoders for dimensionality reduction, graph convolutional networks and self-attention mechanisms for capturing topological and contextual node information, and a stacked ensemble learning framework for final prediction. The ensemble includes five base classifiers: Logistic Regression, Support Vector Machine, Random Forest, Gradient Boosting, and Multi-Layer Perceptron, with a Random Forest serving as the meta-classifier.

GARNet achieves strong performance in stratified cross-validation and is available as both a web server and a standalone tool through PrediLnc (https://dhanjal-lab.iiitd.edu.in/predilnc.html). The platform's biological relevance has been validated through independent case studies, involving distinct lncRNAs and diseases, with predictions supported by evidence from over 500 PubMed studies, underscoring its reliability for the scientific community.

Keywords: long non-coding RNAs, lncRNA-disease association, disease ontology, deep learning, machine learning, GARNet, PrediLnc
DOI: 10.15468/dl.y8qjz7
title: Occurrence Download

description: A dataset containing 638 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa L.",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 638 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079747-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mg52mu
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa L.",
 "Country is Rwanda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079744-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zgwuu
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa L.",
 "Country is Solomon Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079745-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdcawa
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa L.",
 "Country is Uganda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 62 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079752-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wd4hy
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa L.",
 "Country is Tanzania, United Republic of",
 "HasCoordinate is true"
 ]
}

 The dataset includes 109 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079750-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ugh52p
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa L.",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 67 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079751-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmdeyn
title: Occurrence Download

description: A dataset containing 4603 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Channa striata (Bloch, 1793)"
 ]
}

 The dataset includes 4603 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079749-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15771094
title: YREB-ES
DOI: 10.5281/zenodo.15771216
title: Data for the paper entitled Habitat prioritization for bat conservation: a case study in Vietnam

description: This dataset contains values of the 12 environmental variables at the presence locations of 116 bat species in Vietnam. The data were used to build species distribution models in a research paper entitled "Habitat prioritization for bat conservation: a case study in Vietnam".
DOI: 10.5281/zenodo.15771217
title: Data for the paper entitled Habitat prioritization for bat conservation: a case study in Vietnam

description: This dataset contains values of the 12 environmental variables at the presence locations of 116 bat species in Vietnam. The data were used to build species distribution models in a research paper entitled "Habitat prioritization for bat conservation: a case study in Vietnam".
DOI: 10.7910/dvn/0iqzka
title: Blood pressure and nonalcoholic fatty liver disease

description: Hypertension and nonalcoholic fatty liver disease (NAFLD) frequently coexist and share pathophysiological mechanisms. However, despite the known association between these diseases, the cut-off values of blood pressure for identifying NAFLD have not yet been determined. We showed that even high-normal blood pressure is a risk factor that may contribute to NAFLD development. Timely determination and control of blood pressure can be a potentially important aspect of preventing the development and progression of NAFLD.
DOI: 10.15468/dl.2fmgnr
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Grimmia longirostris Hook.",
 "Year 1970-2025"
 ]
}

 The dataset includes 65 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079755-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucn5eg
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa L.",
 "Country is Yemen",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079757-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pyebu
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa L.",
 "Country is Zambia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079758-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxqgju
title: Occurrence Download

description: A dataset containing 4779 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mirabilis jalapa L.",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4779 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079756-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wry3pf
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Lynx lynx (Linnaeus, 1758)",
 "Year 2000-2025"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079760-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e180241v1-184081
title: Data and Code for: Debt Revenue and the Sustainability of Public Debt

description: While public debt has risen in the last two decades, the return that it offers to investors has fallen, especially relative to the return on private investment. This creates a revenue for the government as the supplier of the special services offered by public bonds, which include storage of value, safety, liquidity, and reprieve from repression. The present value of this debt revenue is large relative to the stock of public debt, keeping it sustainable even as the present value of primary balances is zero or negative. It gives rise to different policy tradeoffs than the conventional analysis of primary balances and makes different recommendation on the effects of austerity, the optimal amount of debt, or the spillovers between monetary and fiscal policy.
DOI: 10.15468/dl.ycpgxa
title: Occurrence Download

description: A dataset containing 1541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fallopia convolvulus (L.) Á.Löve",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1541 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079765-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3pxpmy
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fallopia convolvulus (L.) Á.Löve",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 79 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079764-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exgn4e
title: Occurrence Download

description: A dataset containing 1654 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thosea sinensis (Walker, 1855)"
 ]
}

 The dataset includes 1654 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079763-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqb7me
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fallopia convolvulus (L.) Á.Löve",
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079766-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8p8wua
title: Occurrence Download

description: A dataset listing the 36049 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "TaxonKey is Insecta"
 ]
}

 The dataset's 36049 records were derived from 651 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079753-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gju65q
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Albulina optilete (Knoch, 1781)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 146 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072706-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufuxgy
title: Occurrence Download

description: A dataset containing 98601 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gadus morhua Linnaeus, 1758"
 ]
}

 The dataset includes 98601 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111944-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhx7er
title: Occurrence Download

description: A dataset containing 2091667 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Continent is Europe",
 "GadmGid is one of (DEU, ESP, BEL, PRT, CHE, POL, AUT, NLD, DNK, CZE, FRA, GBR, ITA, IRL)",
 "Geometry POLYGON((-10.76531 32.50738,36.32321 32.50738,36.32321 72.21434,-10.76531 72.21434,-10.76531 32.50738))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is August",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Anas georgica J.F.Gmelin, 1789, Anas gracilis Buller, 1869, Anas platyrhynchos Linnaeus, 1758, Mareca strepera (Linnaeus, 1758), Aythya affinis (Eyton, 1838), Bucephala albeola (Linnaeus, 1758), Bucephala clangula (Linnaeus, 1758), Clangula hyemalis (Linnaeus, 1758), Cygnus atratus (Latham, 1790), Somateria spectabilis (Linnaeus, 1758), Spatula clypeata (Linnaeus, 1758), Tadorna cana (J.F.Gmelin, 1789), Tadorna tadorna (Linnaeus, 1758), Mareca americana (J.F.Gmelin, 1789), Ardea cinerea Linnaeus, 1758, Ardea purpurea Linnaeus, 1766, Bubulcus ibis (Linnaeus, 1758), Egretta garzetta (Linnaeus, 1766), Nycticorax nycticorax (Linnaeus, 1758), Charadrius vociferus Linnaeus, 1758, Ciconia ciconia (Linnaeus, 1758), Chlidonias niger (Linnaeus, 1758), Larus californicus Lawrence, 1854, Larus fuscus Linnaeus, 1758, Chroicocephalus genei (Brème, 1839), Hydrocoloeus minutus (Pallas, 1776), Chroicocephalus ridibundus (Linnaeus, 1766), Larus delawarensis Ord, 1815, Pelecanus conspicillatus Temminck, 1824, Phoenicopterus ruber Linnaeus, 1758, Podiceps nigricollis C.L.Brehm, 1831, Fulica americana Gmelin, 1789, Fulica atra Linnaeus, 1758, Himantopus himantopus (Linnaeus, 1758), Recurvirostra americana J.F.Gmelin, 1789, Recurvirostra avosetta Linnaeus, 1758, Calidris alba (Pallas, 1764), Calidris alpina (Linnaeus, 1758), Calidris canutus (Linnaeus, 1758), Calidris ferruginea (Pontoppidan, 1763), Calidris minuta (Leisler, 1812), Calidris falcinellus (Pontoppidan, 1763), Limosa limosa (Linnaeus, 1758), Phalaropus fulicarius (Linnaeus, 1758), Phalaropus lobatus (Linnaeus, 1758), Phalaropus tricolor (Vieillot, 1819), Calidris pugnax (Linnaeus, 1758), Tringa erythropus (Pallas, 1764), Tringa melanoleuca (J.F.Gmelin, 1789), Tringa nebularia (Gunnerus, 1767), Tringa stagnatilis (Bechstein, 1803), Tringa totanus (Linnaeus, 1758), Platalea leucorodia Linnaeus, 1758)",
 "Year 1980-2024"
 ]
}

 The dataset includes 2091667 records from 1095 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072709-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ju7eh8
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dactylopius coccus Costa, 1829)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 167 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043142-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.upfs3c
title: Occurrence Download

description: A dataset containing 3994 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orconectes rusticus (Girard, 1852)"
 ]
}

 The dataset includes 3994 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102653-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.