cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5378109
title: Dietary acculturation of Somali Migrant Women in Switzerland - Data

description: Dataset for the scientific publication "Dietary acculturation of Somali Migrant Women in Switzerland".
description: The research was funded by the Bern University of Applied Sciences.
DOI: 10.6084/m9.figshare.16558095
title: Supplementary Material for: Impact of Gender on the Characteristics of Patients with Idiopathic Pulmonary Fibrosis Included in the RaDiCo-ILD Cohort

description: <b><i>Background:</i></b> There is growing evidence of gender-specific phenotypic differences among patients with idiopathic pulmonary fibrosis (IPF), which may affect patient outcomes. <b><i>Objectives:</i></b> We present the characteristics of patients with IPF at inclusion in the French Rare Disease Cohort – Interstitial Lung Disease (RaDiCo-ILD) with the aim of characterizing gender-specific phenotypic differences. <b><i>Methods:</i></b> Patients with IPF who were enrolled in the national, multicentre RaDiCo-ILD cohort were included. Demographic characteristics, comorbidities, health-related quality of life (HRQoL) scores, pulmonary function, chest imaging, and IPF treatment were collected at inclusion and described by gender. <b><i>Results:</i></b> The cohort included 724 patients with IPF (54% of RaDiCo-ILD cohort), of whom 82.9% were male. The proportion of male and female patients with a prior history of smoking was 75.0% and 26.8%, respectively. Emphysema was present in 17.0% (95% confidence interval [CI]: 10.0, 24.0) of men and 5.4% (95% CI: 1.2, 9.6) of women. At inclusion, females had poorer HRQoL than males based on St. George’s Respiratory Questionnaire scores (48.5 [95% CI: 43.9, 53.0] and 41.5 [39.4, 43.6], respectively). The mean forced vital capacity per cent predicted was 77.7% (95% CI: 76.2, 79.3) and 87.4% (83.4, 91.4) for males and females, respectively. Honeycombing on high-resolution computed tomography (HRCT) was present in 70.8% (95% CI: 61.0, 80.6) of males and 45.8% (95% CI: 35.1, 56.5) of females. <b><i>Conclusions:</i></b> This analysis of patients with IPF at inclusion in the RaDiCo-ILD cohort provides evidence that comorbid emphysema, lung volume reduction, and honeycombing on HRCT are more common characteristics of males than females.
DOI: 10.6084/m9.figshare.16558095.v1
title: Supplementary Material for: Impact of Gender on the Characteristics of Patients with Idiopathic Pulmonary Fibrosis Included in the RaDiCo-ILD Cohort

description: <b><i>Background:</i></b> There is growing evidence of gender-specific phenotypic differences among patients with idiopathic pulmonary fibrosis (IPF), which may affect patient outcomes. <b><i>Objectives:</i></b> We present the characteristics of patients with IPF at inclusion in the French Rare Disease Cohort – Interstitial Lung Disease (RaDiCo-ILD) with the aim of characterizing gender-specific phenotypic differences. <b><i>Methods:</i></b> Patients with IPF who were enrolled in the national, multicentre RaDiCo-ILD cohort were included. Demographic characteristics, comorbidities, health-related quality of life (HRQoL) scores, pulmonary function, chest imaging, and IPF treatment were collected at inclusion and described by gender. <b><i>Results:</i></b> The cohort included 724 patients with IPF (54% of RaDiCo-ILD cohort), of whom 82.9% were male. The proportion of male and female patients with a prior history of smoking was 75.0% and 26.8%, respectively. Emphysema was present in 17.0% (95% confidence interval [CI]: 10.0, 24.0) of men and 5.4% (95% CI: 1.2, 9.6) of women. At inclusion, females had poorer HRQoL than males based on St. George’s Respiratory Questionnaire scores (48.5 [95% CI: 43.9, 53.0] and 41.5 [39.4, 43.6], respectively). The mean forced vital capacity per cent predicted was 77.7% (95% CI: 76.2, 79.3) and 87.4% (83.4, 91.4) for males and females, respectively. Honeycombing on high-resolution computed tomography (HRCT) was present in 70.8% (95% CI: 61.0, 80.6) of males and 45.8% (95% CI: 35.1, 56.5) of females. <b><i>Conclusions:</i></b> This analysis of patients with IPF at inclusion in the RaDiCo-ILD cohort provides evidence that comorbid emphysema, lung volume reduction, and honeycombing on HRCT are more common characteristics of males than females.
DOI: 10.6084/m9.figshare.16558032
title: Supplementary Material for: Inverted Internal Limiting Membrane Flap Technique versus Internal Limiting Membrane Peeling for Large Macular Holes: A Meta-Analysis of Randomized Controlled Trials

description: <b><i>Background:</i></b> Vitrectomy with internal limiting membrane (ILM) peeling is an effective surgical procedure for the treatment of macular holes (MHs). However, there is a possibility of poor postoperative anatomical closure with conventional ILM peeling for MHs larger than 400 μm. Therefore, a novel inverted ILM flap technique was developed for such cases. <b><i>Objectives:</i></b> This meta-analysis study was performed to evaluate and compare the anatomical and visual outcomes of the inverted ILM flap technique and ILM peeling in large MHs. <b><i>Methods:</i></b> The Cochrane Library, PubMed, and Embase databases were searched to identify randomized controlled trials (RCTs). The trial eligibility and risk of bias were assessed according to Cochrane review methods. The primary outcome measures included MH closure rate and postoperative visual acuity (VA). Subgroup analysis of postoperative VA based on follow-up time was also conducted. Pooled odds ratios (ORs), weighted mean difference (WMD), and 95% confidence intervals (CIs) were calculated. Statistical analysis was performed using RevMan 5.3 software. <b><i>Results:</i></b> Five RCTs with a total of 155 eyes in the inverted ILM flap group and 161 eyes in the ILM peeling group were included in this meta-analysis. Statistical meta-analysis revealed that the overall MH closure rate in the inverted ILM flap group was significantly higher than that in the ILM peeling group (OR = 3.10; 95% CI: 1.25–7.66; <i>p</i> = 0.01). The postoperative VA was significantly better in the inverted ILM flap group than the ILM peeling group (WMD = −0.14; 95% CI: −0.21 to −0.07; <i>p</i> = 0.0002). The subgroup meta-analysis indicated that the postoperative VA was significantly better in the inverted ILM flap group than the ILM peeling group (WMD = −0.17; 95% CI: −0.26 to −0.08; <i>p</i> = 0.0004) at the 3-month follow-up. However, no significant difference was observed between the 2 groups at the 6-month follow-up (WMD = −0.09; 95% CI: −0.20 to 0.02; <i>p</i> = 0.10). <b><i>Conclusions:</i></b> Vitrectomy with the inverted ILM flap technique showed a higher anatomical closure rate as well as visual gain – although only in the short term as no difference in visual recovery was found at the 6-month follow-up – than did ILM peeling in large MHs. The inverted ILM flap technique should be considered as a preferred and routine procedure for the treatment of patients with MHs larger than 400 µm.
DOI: 10.6084/m9.figshare.16558125
title: Supplementary Material for: The Association of Pre-Kidney Transplant Dialysis Modality with de novo Posttransplant Heart Failure

description: <b><i>Background:</i></b> Heart failure (HF) after kidney transplantation is a significant but understudied problem. Pretransplant dialysis modality could influence incident HF risk through differing cardiac stressors. However, whether pretransplant dialysis modality is associated with the development of posttransplant HF is unknown. <b><i>Methods:</i></b> We used the US Renal Data System to assemble a cohort of 27,701 patients who underwent their first kidney transplant in the USA between the years 2005 and 2012 and who had Medicare fee-for-service coverage for &gt;6 months preceding their transplant date. Patients with any HF diagnosis prior to transplant were excluded. Detailed baseline patient characteristics and comorbidities were abstracted. The outcome of interest was de novo posttransplant HF. Pretransplant dialysis modality was defined as the dialysis modality used at the time of transplant. We conducted time-to-event analyses using Cox regression. Death was treated as a competing risk in the study’s primary analysis. Graft failure was included as a time-varying covariate. <b><i>Results:</i></b> Among eligible patients, 81% were treated with hemodialysis prior to transplant, and hemodialysis patients were more likely to be male, had a shorter dialysis vintage, and had more diabetes and vascular disease diagnoses. When adjusted for all available demographic and clinical data, pretransplant treatment with hemodialysis (vs. peritoneal dialysis) was associated with a 19% increased risk in de novo posttransplant HF, with sub-distribution HR 1.19 (95% CI: 1.09–1.29). <b><i>Conclusions:</i></b> Our results suggest that choice of pretransplant dialysis modality may impact the development of posttransplant HF.
DOI: 10.6084/m9.figshare.16558125.v1
title: Supplementary Material for: The Association of Pre-Kidney Transplant Dialysis Modality with de novo Posttransplant Heart Failure

description: <b><i>Background:</i></b> Heart failure (HF) after kidney transplantation is a significant but understudied problem. Pretransplant dialysis modality could influence incident HF risk through differing cardiac stressors. However, whether pretransplant dialysis modality is associated with the development of posttransplant HF is unknown. <b><i>Methods:</i></b> We used the US Renal Data System to assemble a cohort of 27,701 patients who underwent their first kidney transplant in the USA between the years 2005 and 2012 and who had Medicare fee-for-service coverage for &gt;6 months preceding their transplant date. Patients with any HF diagnosis prior to transplant were excluded. Detailed baseline patient characteristics and comorbidities were abstracted. The outcome of interest was de novo posttransplant HF. Pretransplant dialysis modality was defined as the dialysis modality used at the time of transplant. We conducted time-to-event analyses using Cox regression. Death was treated as a competing risk in the study’s primary analysis. Graft failure was included as a time-varying covariate. <b><i>Results:</i></b> Among eligible patients, 81% were treated with hemodialysis prior to transplant, and hemodialysis patients were more likely to be male, had a shorter dialysis vintage, and had more diabetes and vascular disease diagnoses. When adjusted for all available demographic and clinical data, pretransplant treatment with hemodialysis (vs. peritoneal dialysis) was associated with a 19% increased risk in de novo posttransplant HF, with sub-distribution HR 1.19 (95% CI: 1.09–1.29). <b><i>Conclusions:</i></b> Our results suggest that choice of pretransplant dialysis modality may impact the development of posttransplant HF.
DOI: 10.5281/zenodo.5378197
title: Assessing Urban Green Space Accessibility in Amsterdam

description: This is dataset is an ArcGIS Pro project was used to calculate walking distance from buildings to Urban Green Spaces (UGS) within the municipality of Amsterdam. This was made as part of an MSc Earth Sciences thesis aimed at assessing UGS and heat exposure in Amsterdam. The thesis is based on the idea that UGS function as cool spaces within the urban heat island of the city, and thus provides lower temperatures to urban residents, specifically during hot summer months, therefore reducing the risk of heat stress and heat-related illnesses and morbidity.
DOI: 10.5281/zenodo.5378196
title: Assessing Urban Green Space Accessibility in Amsterdam

description: This is dataset is an ArcGIS Pro project was used to calculate walking distance from buildings to Urban Green Spaces (UGS) within the municipality of Amsterdam. This was made as part of an MSc Earth Sciences thesis aimed at assessing UGS and heat exposure in Amsterdam. The thesis is based on the idea that UGS function as cool spaces within the urban heat island of the city, and thus provides lower temperatures to urban residents, specifically during hot summer months, therefore reducing the risk of heat stress and heat-related illnesses and morbidity.
DOI: 10.5281/zenodo.5339329
title: MCS stratiform and convective region associated with sprites observed from Mt. Fuji

description: Dataset for sprites observed on 22 July 2013 from the summit of Mt Fuji
DOI: 10.5281/zenodo.5339328
title: MCS stratiform and convective region associated with sprites observed from Mt. Fuji

description: Dataset for sprites observed on 22 July 2013 from the summit of Mt Fuji
DOI: 10.14284/483
title: Bycatch of marine megafauna collected on board midwater pair trawlers in the Adriatic Sea between 2006 and 2019

description: Historical bycatch data of different marine megafauna species collected during a monitoring programme on board the Italian midwater pair trawlers.
description: Datasets (format: OGC GeoPackage) on the distribution of bycatch of dolphins, sea turtles and elasmobranchs by pelagic trawlers in the Adriatic Sea between 2006 and 2019. The fishing effort available is aggregated by year/cell.
DOI: 10.5281/zenodo.3611343
title: Pseudo-Soundings for Publication "Changes in the simulation of instability indices over the Iberian Peninsula due to the use of 3DVAR data assimilation"

description: These data are made available as part of paper: S. J. González-Rojí, S. Carreno-Madinabeitia, J. Sáenz, and G. Ibarra-Berastegi (2021) "Changes in the simulation of atmospheric instability over the Iberian Peninsula due to the use of 3DVAR data assimilation", published in <em>Hydrology and Earth System Sciences (HESS) (</em>https://doi.org/10.5194/hess-25-3471-2021<em>)</em>. The dataset holds selected postprocessed files that allow to reproduce all the results in the paper. Two WRF experiments nested in ERA-Interim were prepared. The first one (N) was configured as in standard numerical downscaling experiments. The second one (D), with the same parameterizations, included a step of 3DVAR data assimilation every 6 hours. The original experiments covered period 2010-2014 after a year of spin-up (2019). The following files are included: - PseudoSoundings_EXP_YYYY: Contains the Pressure, Temperature and Mixing Ratio on each point included in the mask defined for the Iberian Peninsula. The values of each model level are included. The values at 00 and 12 UTC are included. - ListPointsWRF.txt: Provides the order followed in the nPoints dimension of the nc files. The longitud and latitude of each point is also provided in that list. The reference data of the soundings was download from the University of Wyoming, and they are freely available in this website: http://weather.uwyo.edu/upperair/sounding.html
DOI: 10.5281/zenodo.3611342
title: Pseudo-Soundings for Publication "Changes in the simulation of instability indices over the Iberian Peninsula due to the use of 3DVAR data assimilation"

description: These data are made available as part of paper: S. J. González-Rojí, S. Carreno-Madinabeitia, J. Sáenz, and G. Ibarra-Berastegi (2021) "Changes in the simulation of atmospheric instability over the Iberian Peninsula due to the use of 3DVAR data assimilation", published in <em>Hydrology and Earth System Sciences (HESS) (</em>https://doi.org/10.5194/hess-25-3471-2021<em>)</em>. The dataset holds selected postprocessed files that allow to reproduce all the results in the paper. Two WRF experiments nested in ERA-Interim were prepared. The first one (N) was configured as in standard numerical downscaling experiments. The second one (D), with the same parameterizations, included a step of 3DVAR data assimilation every 6 hours. The original experiments covered period 2010-2014 after a year of spin-up (2019). The following files are included: - PseudoSoundings_EXP_YYYY: Contains the Pressure, Temperature and Mixing Ratio on each point included in the mask defined for the Iberian Peninsula. The values of each model level are included. The values at 00 and 12 UTC are included. - ListPointsWRF.txt: Provides the order followed in the nPoints dimension of the nc files. The longitud and latitude of each point is also provided in that list. The reference data of the soundings was download from the University of Wyoming, and they are freely available in this website: http://weather.uwyo.edu/upperair/sounding.html
DOI: 10.5281/zenodo.4668963
title: Data for publication "Sensitivity of precipitation and temperature over the Mount Kenya area to physics parameterization options in a high-resolution model simulation performed with WRFV3.8.1"

description: The data are made available as part of the paper "Sensitivity of precipitation and temperature over the Mount Kenya area to physics parameterization options in a high-resolution model simulation performed with WRFV3.8.1", published in <em>Geoscientific Model Development (GMD) </em>in 2021 (https://doi.org/10.5194/gmd-14-2691-2021). This data set incorporates selected postprocessed files needed to reproduce the results presented in the paper. The files are named following the same structure: <br> VARIABLE-DOMAIN-Kenya-EXPERIMENTNAME-SETUP-2008_monthly.nc These are the options available in each case: - VARIABLE: RR or T2, representing precipitation or 2-meter temperature respectively. - DOMAIN: D02, D03 or D04 representing the number of the domain. - EXPERIMENTNAME: Europe, SouthAmerica, Cumulus3, Cumulus3-1Way or NoCumulus. These are the <br> names included in Table 1 from the paper. - SETUP: 27km4Doms, 25km3Doms, 9km3Doms or 5km2Doms. It specifies the resolution of the parent <br> domain and the number of total domains included in that set-up. <strong>Update v1.1.1: </strong>A zip file (Scripts.zip) including all the scripts used to read, process and plot the data from the model is now included. <strong>Update v1.2: </strong>A new zip file (Namelist_Files.zip) including all the namelist files used to run the simulations is now added. The files are named following the same structure: <br> namelist.EXPERIMENTNAME_SETUP <strong>Update v1.2.1: </strong>The correct version of the namelist files was uploaded. <strong>Update v1.3:</strong> The correct nc files for the experiments included in the final version of the manuscript were uploaded.
DOI: 10.5281/zenodo.4090589
title: Data for publication "Sensitivity of precipitation and temperature over the Mount Kenya area to physics parameterization options in a high-resolution model simulation performed with WRFV3.8.1"

description: The data are made available as part of the paper "Sensitivity of precipitation and temperature over the Mount Kenya area to physics parameterization options in a high-resolution model simulation performed with WRFV3.8.1", published in <em>Geoscientific Model Development (GMD) </em>in 2021 (https://doi.org/10.5194/gmd-14-2691-2021). This data set incorporates selected postprocessed files needed to reproduce the results presented in the paper. The files are named following the same structure: <br> VARIABLE-DOMAIN-Kenya-EXPERIMENTNAME-SETUP-2008_monthly.nc These are the options available in each case: - VARIABLE: RR or T2, representing precipitation or 2-meter temperature respectively. - DOMAIN: D02, D03 or D04 representing the number of the domain. - EXPERIMENTNAME: Europe, SouthAmerica, Cumulus3, Cumulus3-1Way or NoCumulus. These are the <br> names included in Table 1 from the paper. - SETUP: 27km4Doms, 25km3Doms, 9km3Doms or 5km2Doms. It specifies the resolution of the parent <br> domain and the number of total domains included in that set-up. <strong>Update v1.1.1: </strong>A zip file (Scripts.zip) including all the scripts used to read, process and plot the data from the model is now included. <strong>Update v1.2: </strong>A new zip file (Namelist_Files.zip) including all the namelist files used to run the simulations is now added. The files are named following the same structure: <br> namelist.EXPERIMENTNAME_SETUP <strong>Update v1.2.1: </strong>The correct version of the namelist files was uploaded. <strong>Update v1.3:</strong> The correct nc files for the experiments included in the final version of the manuscript were uploaded.
DOI: 10.5281/zenodo.3529489
title: Moisture Recycling over the Iberian Peninsula

description: These data are made available as part of paper: S. J. Gonzalez-Roji, J. Saenz, J. Diaz de Argandona, G. Ibarra-Berastegi (2020) "Moisture recycling over the Iberian Peninsula. The impact of 3DVAR data assimilation", published in <em>Atmosphere </em>(https://doi.org/10.3390/atmos11010019). The dataset holds selected postprocessed files that allow to reproduce all the results in the paper. Two WRF experiments nested in ERA-Interim were prepared. The first one (N) was configured as in standard numerical downscaling experiments. The second one (D), with the same parameterizations, included a step of 3DVAR data assimilation every 6 hours. The original experiments covered period 2010-2014 after a year of spin-up (2019). However, D was extended until the end of 2018. The following monthly averaged (accumulated for rain) nc files are included: - Qx/Qy: Refer to the zonal and meridional vertically integrated moisture fluxes for the domain. - Rain: Include the accumulated convective and large-scale precipitation output from the model. - SMOIS: Contains the soil moisture of the model runs. - mask: Defines the area where the recycling ratio is calculated over the Iberian Peninsula. - Rho: Holds the recycling ratio at every grid point. The -N- or -D- characters in the file names indicate whether the files come from the WRF N or WRF D experiments.
DOI: 10.5281/zenodo.3529488
title: Moisture Recycling over the Iberian Peninsula

description: These data are made available as part of paper: S. J. Gonzalez-Roji, J. Saenz, J. Diaz de Argandona, G. Ibarra-Berastegi (2020) "Moisture recycling over the Iberian Peninsula. The impact of 3DVAR data assimilation", published in <em>Atmosphere </em>(https://doi.org/10.3390/atmos11010019). The dataset holds selected postprocessed files that allow to reproduce all the results in the paper. Two WRF experiments nested in ERA-Interim were prepared. The first one (N) was configured as in standard numerical downscaling experiments. The second one (D), with the same parameterizations, included a step of 3DVAR data assimilation every 6 hours. The original experiments covered period 2010-2014 after a year of spin-up (2019). However, D was extended until the end of 2018. The following monthly averaged (accumulated for rain) nc files are included: - Qx/Qy: Refer to the zonal and meridional vertically integrated moisture fluxes for the domain. - Rain: Include the accumulated convective and large-scale precipitation output from the model. - SMOIS: Contains the soil moisture of the model runs. - mask: Defines the area where the recycling ratio is calculated over the Iberian Peninsula. - Rho: Holds the recycling ratio at every grid point. The -N- or -D- characters in the file names indicate whether the files come from the WRF N or WRF D experiments.
DOI: 10.5519/qd.kbvx91fn
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.5379603
title: INDIVIDUAL RESPONSES FROM THE DUBOWITZ NEUROLOGICAL EXAMINATION AND DEMOGRAPHIC QUESTIONNAIRE

description: INDIVIDUAL RESPONSES FROM THE DUBOWITZ NEUROLOGICAL EXAMINATION AND DEMOGRAPHIC QUESTIONNAIRE
DOI: 10.5281/zenodo.5379602
title: INDIVIDUAL RESPONSES FROM THE DUBOWITZ NEUROLOGICAL EXAMINATION AND DEMOGRAPHIC QUESTIONNAIRE

description: INDIVIDUAL RESPONSES FROM THE DUBOWITZ NEUROLOGICAL EXAMINATION AND DEMOGRAPHIC QUESTIONNAIRE
DOI: 10.6084/m9.figshare.16554168
title: Zebrafish Developmental Stage 3' end data (GRCz11/e92)

description: This contains the DeTCT data presented in White et al. 2017 (https://doi.org/10.7554/eLife.30860) mapped to the GRCz11 assembly and counted against the Ensembl version 92 annotation.<br>Descriptions of each file are in the README.md file<br>
DOI: 10.6084/m9.figshare.16554168.v1
title: Zebrafish Developmental Stage 3' end data (GRCz11/e92)

description: This contains the DeTCT data presented in White et al. 2017 (https://doi.org/10.7554/eLife.30860) mapped to the GRCz11 assembly and counted against the Ensembl version 92 annotation.<br>Descriptions of each file are in the README.md file<br>