cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/5a45f25ba0440a5efd32177a9103fb5f
title: Time series of dissolved methane and carbon dioxide concentrations for Falling Creek Reservoir and Beaverdam Reservoir in southwestern Virginia, USA during 2015-2023

description: Surface samples and depth profiles of carbon dioxide and methane concentrations were sampled from 2015 to 2023 in two drinking water reservoirs in southwestern Virginia, USA: Beaverdam Reservoir (Vinton, Virginia) and Falling Creek Reservoir (Vinton, Virginia). Both reservoirs are owned and operated by the Western Virginia Water Authority as primary or secondary drinking water sources for Roanoke, Virginia. The dataset consists of depth profiles of dissolved greenhouse gas (carbon dioxide, methane) samples measured at the deepest site of each reservoir adjacent to the dam. Additional surface samples were collected at a gauged weir on Falling Creek Reservoir's primary inflow tributary, from a wetland adjacent to Falling Creek Reservoir, and from the reservoir outflow. At Beaverdam Reservoir, additional samples were collected at three outflow points below the dam and at the mid-reservoir outflow. Samples were collected approximately fortnightly from March-April, weekly from May-October, and monthly in November-February at Falling Creek Reservoir and Beaverdam Reservoir. In 2019, surface samples along the stream and reservoir continuum from both Falling Creek Reservoir and Beaverdam Reservoir were collected monthly during the summer stratified period (see site descriptions file for geographic coordinates of sampling sites).
DOI: 10.5281/zenodo.10571868
title: Challenges in understanding the relationship between teamwork quality and project success in large-scale agile projects

description: A number of methods for large-scale agile development have recently been suggested. Much of the advice in agile methods focuses on teamwork. Prior research has established that teamwork quality influences project success both for traditional software development teams and agile teams. Further, prior studies have also suggested that teamwork quality may play out differently in large projects compared to small. We investigated the relationship between teamwork quality and project success with a survey of 196 project participants across 34 teams in four projects, replicating a previous study on single teams. The new data do not fit the previously established theoretical model, which raises several concerns. The observed effect of teamwork quality on project success operates differently across projects. We discuss possible reasons, which include disagreements on what characterises success in large-scale agile development, "concept drift" of teamwork quality factors, the possibility that interteam factors might have more influence on project success than intrateam factors, and finally, that our study design does not capture all relevant levels and functions. We conclude with a call for more studies on the quality and frequency of interaction between teams in addition to internal team factors to further advance theory and practice within large-scale agile software development.
DOI: 10.5281/zenodo.10571869
title: Challenges in understanding the relationship between teamwork quality and project success in large-scale agile projects

description: A number of methods for large-scale agile development have recently been suggested. Much of the advice in agile methods focuses on teamwork. Prior research has established that teamwork quality influences project success both for traditional software development teams and agile teams. Further, prior studies have also suggested that teamwork quality may play out differently in large projects compared to small. We investigated the relationship between teamwork quality and project success with a survey of 196 project participants across 34 teams in four projects, replicating a previous study on single teams. The new data do not fit the previously established theoretical model, which raises several concerns. The observed effect of teamwork quality on project success operates differently across projects. We discuss possible reasons, which include disagreements on what characterises success in large-scale agile development, "concept drift" of teamwork quality factors, the possibility that interteam factors might have more influence on project success than intrateam factors, and finally, that our study design does not capture all relevant levels and functions. We conclude with a call for more studies on the quality and frequency of interaction between teams in addition to internal team factors to further advance theory and practice within large-scale agile software development.
DOI: 10.5281/zenodo.10497991
title: Cut&Run H3K9ac inVivo HFD BA 30mg

description: For CUT&RUN against H3K27ac in mouse liversamples, we utilised the EpiCypher inc CUTANA ChIC/CUT&RUN kit (EpiCypher, SKU: 14-9521048) according to the manufacturer’s instructions with minor modifications.For in vivo experiments, approximately 200 mg of liver tissue was homogenized in DMEM(Gibco, 41966-029) using a potter tube and a glass pestle with 12 strokes. The resulting cellsuspension was then centrifuged at 1000 xg for 5 minutes at 4°C. The samples weresubsequently washed with 1 ml PBS (Sigma D8537) supplemented with cOmplete proteaseinhibitor cocktail (Roche, CO-RO SKU 11697498001) and 10 mM sodium butyrate (SigmaAldrich, 303410), followed by centrifugation under the same conditions. The following stepswere performed in presence of protease inhibitors and sodium butyrate. Washed cells wereresuspended in 1 ml of NIB with 0.3% IGEPAL CA-630 (Sigma, I8896) and incubated on icefor 5 minutes. The nuclear suspension was then centrifuged at 1000 xg for 5 minutes at 4°C.The resulting nuclear pellet was washed with 1 ml of nucleus isolation buffer (NIB) (15 mMTris-HCl (Carl Roth, Art.-Nr. 9090.3) pH 7.5, 60 mM KCl (Carl Roth, Art.-Nr. 6781.3), 11 mMCaCl2 (Carl Roth, Art.-Nr. CN93.1), 5 mM NaCl (Carl Roth, Art.-Nr. 3957.2), 5 mM MgCl2 (CarlRoth, Art.-Nr. KK36.2), 250 mM sucrose (Sigma, S0389), 1 mM 1,4-Dithiothreitol (Carl Roth,Page 37Art.-Nr. 6908.3), 10 mM sodium butyrate (Sigma Aldrich, 303410)) without IGEPAL CA-630,and the nuclei were subsequently filtered through a 30 μm strainer. An additional washing stepwas performed with 1 ml of NIB, and after centrifugation, and the nuclei resuspended in 100μl of NIB without IGEPAL CA-630. The nuclei were counted, and 0.5 x 106 nuclei were usedfor the subsequent procedure, either in step 7 for ACLY ChIC (Version 1.0 EpiCypher, SKU:14-1048) or in step 14 for H3K9ac and H3K27ac ChIC (Version 3.3 EpiCypher, SKU: 14-1048)of the manufacturer's protocol.For each reaction, 2 μg of antibody was used (Diagenode C15410196). Sequencinglibraries were prepared using NEBNext Ultra II library preparation procedure (New EngladBiolabs, E7645L) with modifications according to NGS Library preparation of CUTANAChIC/CUT&RUN kit (EpiCypher, SKU: 14-1048, Version 1.0), and then assessed for qualityand quantity by BioAnalyzer (Agilent). Generated libraries were sequenced on an IlluminaNovaSeq instrument (150 bp, paired-end)
DOI: 10.5281/zenodo.10497992
title: Cut&Run H3K9ac inVivo HFD BA 30mg

description: For CUT&RUN against H3K27ac in mouse liversamples, we utilised the EpiCypher inc CUTANA ChIC/CUT&RUN kit (EpiCypher, SKU: 14-9521048) according to the manufacturer’s instructions with minor modifications.For in vivo experiments, approximately 200 mg of liver tissue was homogenized in DMEM(Gibco, 41966-029) using a potter tube and a glass pestle with 12 strokes. The resulting cellsuspension was then centrifuged at 1000 xg for 5 minutes at 4°C. The samples weresubsequently washed with 1 ml PBS (Sigma D8537) supplemented with cOmplete proteaseinhibitor cocktail (Roche, CO-RO SKU 11697498001) and 10 mM sodium butyrate (SigmaAldrich, 303410), followed by centrifugation under the same conditions. The following stepswere performed in presence of protease inhibitors and sodium butyrate. Washed cells wereresuspended in 1 ml of NIB with 0.3% IGEPAL CA-630 (Sigma, I8896) and incubated on icefor 5 minutes. The nuclear suspension was then centrifuged at 1000 xg for 5 minutes at 4°C.The resulting nuclear pellet was washed with 1 ml of nucleus isolation buffer (NIB) (15 mMTris-HCl (Carl Roth, Art.-Nr. 9090.3) pH 7.5, 60 mM KCl (Carl Roth, Art.-Nr. 6781.3), 11 mMCaCl2 (Carl Roth, Art.-Nr. CN93.1), 5 mM NaCl (Carl Roth, Art.-Nr. 3957.2), 5 mM MgCl2 (CarlRoth, Art.-Nr. KK36.2), 250 mM sucrose (Sigma, S0389), 1 mM 1,4-Dithiothreitol (Carl Roth,Page 37Art.-Nr. 6908.3), 10 mM sodium butyrate (Sigma Aldrich, 303410)) without IGEPAL CA-630,and the nuclei were subsequently filtered through a 30 μm strainer. An additional washing stepwas performed with 1 ml of NIB, and after centrifugation, and the nuclei resuspended in 100μl of NIB without IGEPAL CA-630. The nuclei were counted, and 0.5 x 106 nuclei were usedfor the subsequent procedure, either in step 7 for ACLY ChIC (Version 1.0 EpiCypher, SKU:14-1048) or in step 14 for H3K9ac and H3K27ac ChIC (Version 3.3 EpiCypher, SKU: 14-1048)of the manufacturer's protocol.For each reaction, 2 μg of antibody was used (Diagenode C15410196). Sequencinglibraries were prepared using NEBNext Ultra II library preparation procedure (New EngladBiolabs, E7645L) with modifications according to NGS Library preparation of CUTANAChIC/CUT&RUN kit (EpiCypher, SKU: 14-1048, Version 1.0), and then assessed for qualityand quantity by BioAnalyzer (Agilent). Generated libraries were sequenced on an IlluminaNovaSeq instrument (150 bp, paired-end)
DOI: 10.15787/vtt1/hedsb6
title: Investigating and Developing Methods for Traditional Participant-based Data Collection with Remote Experimenters (05-097)

description: Project Description: This project focused on developing tools for performing in-vehicle experiments remotely, i.e. without a researcher in the vehicle with participants. Data Scope: The data uploaded consists of a set of NodeJS and Python tools to simulate and visualize vehicle state (as if from a remotely monitored vehicle), for the purpose of monitoring a vehicle during experiments where it is required. This software could be used to visualize real (i.e., not simulated) remote vehicle data. Data Specification: N/A (this upload is not “data” per se, and instead a set of software that can be run to visualize data)
DOI: 10.6084/m9.figshare.25111634
title: Bacterial and fungal OTU table in litters and sediment

description: Modeling the Microorganism Impact on the Third-stage Decomposition of Macrophyte Debris in Macrophyte-Dominated Eutrophication Lakes
DOI: 10.6084/m9.figshare.25111634.v1
title: Bacterial and fungal OTU table in litters and sediment

description: Modeling the Microorganism Impact on the Third-stage Decomposition of Macrophyte Debris in Macrophyte-Dominated Eutrophication Lakes
DOI: 10.6084/m9.figshare.25111853
title: <b>Variation in plant functional traits explains the substitution distribution and allocation strategy of </b><b><i>Stipa </i></b><b>species across natural grasslands of Ningxia, northern China</b>

description: Functional traits and influencing factors of <i>Stipa</i>
DOI: 10.6084/m9.figshare.25111853.v1
title: <b>Variation in plant functional traits explains the substitution distribution and allocation strategy of </b><b><i>Stipa </i></b><b>species across natural grasslands of Ningxia, northern China</b>

description: Functional traits and influencing factors of <i>Stipa</i>
DOI: 10.4121/ca5b3196-ac7c-4753-93cd-099d82277a99.v1
title: Code underlying the MSc thesis: Observing human gait and detecting falls: A wearable model-based approach

description: Code complementing the thesis by Sachin Umans for the degree of MSc Systems & Control from the TU Delft. Contains a wearable, model-based, pre-impact fall detector algorithm based on a single IMU sensor.
DOI: 10.6084/m9.figshare.25111907
title: Supplementary Material for: Cost-effectiveness of a government policy to incentivise chronic disease management following stroke: a modelling study

description: Background: Little is known about the cost-effectiveness of government policies that support primary care physicians to provide comprehensive chronic disease management (CDM).
Aims: To estimate the potential cost-effectiveness of CDM policies, over a lifetime, in long-time survivors of stroke.
Methods: A Markov model, using three health states (stable, hospitalised, dead), was developed to simulate the costs and benefits of CDM policies over 30 years (with 1-year cycles). Transition probabilities and costs from a health system perspective were obtained from the linkage of data between the Australian Stroke Clinical Registry (cohort n=12,368, 42% female, median age 70 years, 45% had a claim) and government-held hospital, Medicare, and pharmaceutical claims datasets. Quality-adjusted life years (QALYs) were obtained from a comparable cohort (n=512, 34% female, median age 69.6 years, 52% had a claim) linked with Medicare claims and death data. A 3% discount rate was applied to costs in Australian dollars (AUD, 2016) and QALYs beyond 12 months. Probabilistic sensitivity analyses were used to understand uncertainty.
Results: Per-person average total lifetime costs were AUD142,939 and 8.97 QALYs for those with a claim, and AUD103,889 and 8.98 QALYs for those without a claim. This indicates that these CDM policies were costlier without improving QALYs. The probability of cost-effectiveness of CDM was 26.1%, at a willingness-to-pay threshold of AUD50,000/QALY.
Conclusion: CDM policies, designed to encourage comprehensive care, are unlikely to be cost-effective for stroke compared to care without CDM. Further research to understand how to deliver such care in a cost-effective manner is needed.
DOI: 10.6084/m9.figshare.25111907.v1
title: Supplementary Material for: Cost-effectiveness of a government policy to incentivise chronic disease management following stroke: a modelling study

description: Background: Little is known about the cost-effectiveness of government policies that support primary care physicians to provide comprehensive chronic disease management (CDM).
Aims: To estimate the potential cost-effectiveness of CDM policies, over a lifetime, in long-time survivors of stroke.
Methods: A Markov model, using three health states (stable, hospitalised, dead), was developed to simulate the costs and benefits of CDM policies over 30 years (with 1-year cycles). Transition probabilities and costs from a health system perspective were obtained from the linkage of data between the Australian Stroke Clinical Registry (cohort n=12,368, 42% female, median age 70 years, 45% had a claim) and government-held hospital, Medicare, and pharmaceutical claims datasets. Quality-adjusted life years (QALYs) were obtained from a comparable cohort (n=512, 34% female, median age 69.6 years, 52% had a claim) linked with Medicare claims and death data. A 3% discount rate was applied to costs in Australian dollars (AUD, 2016) and QALYs beyond 12 months. Probabilistic sensitivity analyses were used to understand uncertainty.
Results: Per-person average total lifetime costs were AUD142,939 and 8.97 QALYs for those with a claim, and AUD103,889 and 8.98 QALYs for those without a claim. This indicates that these CDM policies were costlier without improving QALYs. The probability of cost-effectiveness of CDM was 26.1%, at a willingness-to-pay threshold of AUD50,000/QALY.
Conclusion: CDM policies, designed to encourage comprehensive care, are unlikely to be cost-effective for stroke compared to care without CDM. Further research to understand how to deliver such care in a cost-effective manner is needed.
DOI: 10.24400/527896/a01-2023.020
title: ALTimetry Innovative Coastal Approach Product (ALTICAP)
DOI: 10.5281/zenodo.10592551
title: Dataset of 'Nonlinear magnetotransport in MoTe2'

description: The .rar file contains all the raw data used for the paper 'Nonlinear magnetotransport' in MoTe2. In addition it contains the (partially) processed data and data used to plot the figures on the paper.
description: This work was supported by the Dutch Research Council (NWO) through grants STU.019.014, the Zernike Institute for Advanced Materials, the research program “Materials for the Quantum Age” (QuMat, registrationnumber 024.005.006), which is part of the Gravitation program financed by the Dutch Ministry of Education, Culture and Science (OCW), and the European Union (ERC, 2DOPTOSPIN, 101076932). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them.
DOI: 10.5281/zenodo.10592552
title: Dataset of 'Nonlinear magnetotransport in MoTe2'

description: The .rar file contains all the raw data used for the paper 'Nonlinear magnetotransport' in MoTe2. In addition it contains the (partially) processed data and data used to plot the figures on the paper.
description: This work was supported by the Dutch Research Council (NWO) through grants STU.019.014, the Zernike Institute for Advanced Materials, the research program “Materials for the Quantum Age” (QuMat, registrationnumber 024.005.006), which is part of the Gravitation program financed by the Dutch Ministry of Education, Culture and Science (OCW), and the European Union (ERC, 2DOPTOSPIN, 101076932). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them.
DOI: 10.7916/x072-h634
title:  The Evolutions and Large-scale Mechanisms of Summer Stratospheric Ozone Intrusion across Global Hotspots, version 2
DOI: 10.6084/m9.figshare.25111214.v1
title: Reserves_2021

description: This file contains reserve data from USGS for the year 2021 for the 48 resources considered in ESSENZ and ESSENZ+.
DOI: 10.6084/m9.figshare.25111934
title: 20240131_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.25111934.v1
title: 20240131_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.5281/zenodo.10591745
title: Experimental data associated with publication "Why soft contacts are stickier when breaking than when making them"

description: Experimental data for publication "Why soft contacts are stickier when breaking than when making them"

Link to associated preprint: https://arxiv.org/abs/2307.14233

This folder contains the adhesion-experiment data shown in the manuscript "Why soft contacts are stickier when breaking than when making them" along with the python code processing it.  

The data includes recordings of the force vs. time and videos of the contact area, as well as force vs. contact area extracted from such videos.

More details on the data are provided in the manuscript and in the file "Readme.md"
DOI: 10.5281/zenodo.10591746
title: Experimental data associated with publication "Why soft contacts are stickier when breaking than when making them"

description: Experimental data for publication "Why soft contacts are stickier when breaking than when making them"

Link to associated preprint: https://arxiv.org/abs/2307.14233

This folder contains the adhesion-experiment data shown in the manuscript "Why soft contacts are stickier when breaking than when making them" along with the python code processing it.  

The data includes recordings of the force vs. time and videos of the contact area, as well as force vs. contact area extracted from such videos.

More details on the data are provided in the manuscript and in the file "Readme.md"
DOI: 10.20393/4e9753d1-e3a7-4d7b-9df2-484f8d1516fd
title: Atlas of Commercial Fisheries around Ireland, Fourth Edition 2024

description: This atlas provides a series of detailed maps of commercial fishing activity around Ireland with the aim of providing insights into fishing activities and fisheries resources. The atlas contains maps of:
 Fishing effort by vessels of all nationalities by gear type inside the Irish Exclusive Economic Zone (EEZ);
 Fishing effort by Irish vessels gear type in all areas where it takes place for each;
 Landings taken by Irish vessels for the main commercially exploited species.
The atlas is the fourth of its kind and is based on data from fishing vessels of =12m in length over the period 2018-2022.
The vessel monitoring and logbook data that form the basis of the maps were collected under Council Regulation (EC) No. 1224/2009 and were aggregated and processed by the Marine Institute.
DOI: 10.6084/m9.figshare.24441332.v1
title: Comparative study of a point-of-care test and an enzyme-linked immunosorbent assay (ELISA) for infliximab levels

description: Proactive therapeutic drug monitoring (TDM) is often challenged by long turnaround time when using enzyme-linked immunosorbent assays (ELISAs), especially when analyses are centralised. Point-of-care tests (POCTs) allow rapid assessments, but data on their agreement with existing in-house methodologies are scarce. To examine the agreement between a POCT by ProciseDx (San Diego, CA) and the most frequently used in-house ELISA for infliximab (IFX) quantification in Sweden. Serum samples were analysed using the in-house ELISA, Karolinska University Hospital, Stockholm, Sweden and a POCT by ProciseDx (San Diego, CA). Agreement was assessed and differences were examined. Samples from 61 inflammatory bowel disease (IBD) patients were analysed with a median IFX concentration of 7.9 μg/mL (interquartile range (IQR) 5.5–13) for the POCT and 7.9 μg/mL (IQR 5.2–12) for the ELISA (Pearson’s correlation coefficient = 0.95 (95% CI 0.92–0.97, <i>p</i> &lt; .01)). A Passing–Bablok regression yielded an intercept of −0.44 and a slope of 1.09. The Bland–Altman plot showed a systemic bias of −0.77 μg/mL (95% CI −0.18 to −1.4) between the methods. The upper limit of agreement was 3.7 (95% CI 2.7–4.8) (μg/mL), whereas the lower limit agreement was −5.3 (95% CI −6.3 to −4.3) (μg/mL). An excellent reliability was observed, intraclass correlation showed = 0.94 (95% CI 0.89–0.96, <i>p</i> &lt; .0001). When defining IFX concentration as subtherapeutic (&lt;3.0 μg/mL), therapeutic (3.0–7.0 μg/mL) or supratherapeutic (&gt;7.0 μg/mL) drug levels, Kappa statistics showed a substantial agreement (0.79). The POCT by ProciseDx (San Diego, CA) demonstrated a good agreement with the in-house ELISA, supporting its use for rapid IFX quantification.