cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12097074.v1
title: Additional file 2 of Comprehensive routine diagnostic screening to identify predictive mutations, gene amplifications, and microsatellite instability in FFPE tumor material

description: Additional file 2:. This files contains supplementary Table 1–8.
DOI: 10.6084/m9.figshare.12097038
title: Additional file 2 of Gut microbiota in children with juvenile idiopathic arthritis: characteristics, biomarker identification, and usefulness in clinical prediction

description: Additional file 2 : Table S1. Mapping file (metadata); Table S2: OTU table; Table S3: Taxonomy of OTUs; Table S4. α diversity indices. Table S5. Data for Venn diagram. Table S6. OTUs greater than 0.3% of the total reads. Table S7. P values of genera (The results of compositional analysis using the ALDEx2 package at the genus level). Table S8. P values of OTU (The results of compositional analysis using the ALDEx2 package at the OTU level). Table S9. OTUs greater than 0.001% of the total reads.
DOI: 10.6084/m9.figshare.12097038.v1
title: Additional file 2 of Gut microbiota in children with juvenile idiopathic arthritis: characteristics, biomarker identification, and usefulness in clinical prediction

description: Additional file 2 : Table S1. Mapping file (metadata); Table S2: OTU table; Table S3: Taxonomy of OTUs; Table S4. α diversity indices. Table S5. Data for Venn diagram. Table S6. OTUs greater than 0.3% of the total reads. Table S7. P values of genera (The results of compositional analysis using the ALDEx2 package at the genus level). Table S8. P values of OTU (The results of compositional analysis using the ALDEx2 package at the OTU level). Table S9. OTUs greater than 0.001% of the total reads.
DOI: 10.6084/m9.figshare.12096969
title: Additional file 2 of In-silico detection of aneuploidy and chromosomal deletions in wheat using genotyping-by-sequencing

description: Additional file 2: Table S1. List of accessions (samples) analyzed in this study.
DOI: 10.6084/m9.figshare.12096969.v1
title: Additional file 2 of In-silico detection of aneuploidy and chromosomal deletions in wheat using genotyping-by-sequencing

description: Additional file 2: Table S1. List of accessions (samples) analyzed in this study.
DOI: 10.6084/m9.figshare.12096942
title: Additional file 1 of ‘I didn’t know what to expect’: Exploring patient perspectives to identify targets for change to improve telephone-delivered psychological interventions

description: Additional file 1. Patient data codes mapped to TDF domains and TFA constructs.
DOI: 10.6084/m9.figshare.12096942.v1
title: Additional file 1 of ‘I didn’t know what to expect’: Exploring patient perspectives to identify targets for change to improve telephone-delivered psychological interventions

description: Additional file 1. Patient data codes mapped to TDF domains and TFA constructs.
DOI: 10.6084/m9.figshare.12096912
title: Additional file 1 of Genome-wide identification and expression analysis of the NAC transcription factor family in tomato (Solanum lycopersicum) during aluminum stress

description: Additional file 1: Table S1. Structural features of NAC family genes in tomato (Solanum lycopersicum). Table S2. Summary of RNA-Seq of tomato root tip in response to 0 or 10 μM Al for 6 h. Table S3. Statistics of genes and transcripts. Table S4. List of up-regulated differentially expressed genes (DEGs) in response to Al stress in tomato. Table S5. List of down-regulated differentially expressed genes (DEGs) in response to Al stress in tomato. Table S6. List of SlNAC genes whose expression was regulated by Al stress for 6 h. Table S7. List of published NAC genes in our naming system. Table S8. List of primers used in this study.
DOI: 10.6084/m9.figshare.12096912.v1
title: Additional file 1 of Genome-wide identification and expression analysis of the NAC transcription factor family in tomato (Solanum lycopersicum) during aluminum stress

description: Additional file 1: Table S1. Structural features of NAC family genes in tomato (Solanum lycopersicum). Table S2. Summary of RNA-Seq of tomato root tip in response to 0 or 10 μM Al for 6 h. Table S3. Statistics of genes and transcripts. Table S4. List of up-regulated differentially expressed genes (DEGs) in response to Al stress in tomato. Table S5. List of down-regulated differentially expressed genes (DEGs) in response to Al stress in tomato. Table S6. List of SlNAC genes whose expression was regulated by Al stress for 6 h. Table S7. List of published NAC genes in our naming system. Table S8. List of primers used in this study.
DOI: 10.6084/m9.figshare.12096861
title: Additional file 9 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 9: File: S2.1. General features of the S. flexneri 5a M90T virulence plasmid (pWR100) annotated with RAST [58].
DOI: 10.6084/m9.figshare.12096861.v1
title: Additional file 9 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 9: File: S2.1. General features of the S. flexneri 5a M90T virulence plasmid (pWR100) annotated with RAST [58].
DOI: 10.25375/uct.12315092
title: Dataset for two papers: Using the Epps effect to detect discrete data generating processes, and; Fourier instantaneous estimators and the Epps effect

description: Data consists of Trade and Quote data for 10 equities from the Johannesburg Stock Exchange. The data consists of 40 days of trading data starting from 2019-05-02 to 2019-06-28. The data has been processed to contain only the Automated Trade (AT) types. Furthermore, trades with the same time-stamp have been aggregated using a volume weighted average so that there is only one trade per time-stamp. Missing data is indicated with NaN's. <br><br>The 10 equities included are: FirstRand Limited (FSR), Shoprite Holdings Ltd (SHP), Absa Group Ltd (ABG), Nedbank Group Ltd (NED), Standard Bank Group Ltd (SBK), Sasol Ltd (SOL), Mondi Plc (MNP), Anglo American Plc (AGL), Naspers Ltd (NPN) and British American Tobacco Plc (BTI).<br><br>The data structure in each csv file is 11 columns, with the first being the times at which the assets have traded. The remaining 10 columns are the trade information of the tickers. The values in these columns are the trading price (aggregated). NaN means the asset did not trade at that time stamp.<br>The data should only be used to aid the reproducibility for the papers:<br>Paper 1:Using the Epps effect to detect discrete data generating processes. The steps to reproduce our results can be found in our GitHub site: https://github.com/CHNPAT005/PCEPTG-EC. <br>The research focuses on empirically determining if correlations are an emerging property in high frequency finance.DOI for the code: 10.25375/uct.12315167<br><br>Paper 2:Fourier instantaneous estimators and the Epps effect. The steps to reproduce our results can be found in our GitHub site: https://github.com/CHNPAT005/PC-FIE.<br><br>The research compares two Fourier instantaneous estimators and investigates the impact the Epps effect has on the instantaneous estimates.DOI for the code: 10.25375/uct.12613502<br>The work is funded by the South African Statistical Association. The original data was sourced from Bloomberg Pro. The code for the research is done using Julia Pro.<br><br>
DOI: 10.6084/m9.figshare.12096855
title: Additional file 8 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 8: File: S2. General features of the S. flexneri 5a M90T chromosome annotated with RAST [58].
DOI: 10.6084/m9.figshare.12096849
title: Additional file 7 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 7: File S1.1. General features of the S. flexneri 5a M90T virulence plasmid (pWR100) annotated with Prokka [59].
DOI: 10.6084/m9.figshare.12096855.v1
title: Additional file 8 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 8: File: S2. General features of the S. flexneri 5a M90T chromosome annotated with RAST [58].
DOI: 10.6084/m9.figshare.12096849.v1
title: Additional file 7 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 7: File S1.1. General features of the S. flexneri 5a M90T virulence plasmid (pWR100) annotated with Prokka [59].
DOI: 10.25375/uct.12315092.v2
title: Dataset for two papers: Using the Epps effect to detect discrete data generating processes, and; Fourier instantaneous estimators and the Epps effect

description: Data consists of Trade and Quote data for 10 equities from the Johannesburg Stock Exchange. The data consists of 40 days of trading data starting from 2019-05-02 to 2019-06-28. The data has been processed to contain only the Automated Trade (AT) types. Furthermore, trades with the same time-stamp have been aggregated using a volume weighted average so that there is only one trade per time-stamp. Missing data is indicated with NaN's. <br><br>The 10 equities included are: FirstRand Limited (FSR), Shoprite Holdings Ltd (SHP), Absa Group Ltd (ABG), Nedbank Group Ltd (NED), Standard Bank Group Ltd (SBK), Sasol Ltd (SOL), Mondi Plc (MNP), Anglo American Plc (AGL), Naspers Ltd (NPN) and British American Tobacco Plc (BTI).<br><br>The data structure in each csv file is 11 columns, with the first being the times at which the assets have traded. The remaining 10 columns are the trade information of the tickers. The values in these columns are the trading price (aggregated). NaN means the asset did not trade at that time stamp.<br>The data should only be used to aid the reproducibility for the papers:<br>Paper 1:Using the Epps effect to detect discrete data generating processes. The steps to reproduce our results can be found in our GitHub site: https://github.com/CHNPAT005/PCEPTG-EC. <br>The research focuses on empirically determining if correlations are an emerging property in high frequency finance.DOI for the code: 10.25375/uct.12315167<br><br>Paper 2:Fourier instantaneous estimators and the Epps effect. The steps to reproduce our results can be found in our GitHub site: https://github.com/CHNPAT005/PC-FIE.<br><br>The research compares two Fourier instantaneous estimators and investigates the impact the Epps effect has on the instantaneous estimates.DOI for the code: 10.25375/uct.12613502<br>The work is funded by the South African Statistical Association. The original data was sourced from Bloomberg Pro. The code for the research is done using Julia Pro.<br><br>
DOI: 10.25375/uct.12315092.v3
title: Dataset for two papers: Using the Epps effect to detect discrete data generating processes, and; Fourier instantaneous estimators and the Epps effect

description: Data consists of Trade and Quote data for 10 equities from the Johannesburg Stock Exchange. The data consists of 40 days of trading data starting from 2019-05-02 to 2019-06-28. The data has been processed to contain only the Automated Trade (AT) types. Furthermore, trades with the same time-stamp have been aggregated using a volume weighted average so that there is only one trade per time-stamp. Missing data is indicated with NaN's. <br><br>The 10 equities included are: FirstRand Limited (FSR), Shoprite Holdings Ltd (SHP), Absa Group Ltd (ABG), Nedbank Group Ltd (NED), Standard Bank Group Ltd (SBK), Sasol Ltd (SOL), Mondi Plc (MNP), Anglo American Plc (AGL), Naspers Ltd (NPN) and British American Tobacco Plc (BTI).<br><br>The data structure in each csv file is 11 columns, with the first being the times at which the assets have traded. The remaining 10 columns are the trade information of the tickers. The values in these columns are the trading price (aggregated). NaN means the asset did not trade at that time stamp.<br>The data should only be used to aid the reproducibility for the papers:<br>Paper 1:Using the Epps effect to detect discrete data generating processes. The steps to reproduce our results can be found in our GitHub site: https://github.com/CHNPAT005/PCEPTG-EC. <br>The research focuses on empirically determining if correlations are an emerging property in high frequency finance.DOI for the code: 10.25375/uct.12315167<br><br>Paper 2:Fourier instantaneous estimators and the Epps effect. The steps to reproduce our results can be found in our GitHub site: https://github.com/CHNPAT005/PC-FIE.<br><br>The research compares two Fourier instantaneous estimators and investigates the impact the Epps effect has on the instantaneous estimates.DOI for the code: 10.25375/uct.12613502<br>The work is funded by the South African Statistical Association. The original data was sourced from Bloomberg Pro. The code for the research is done using Julia Pro.<br><br>
DOI: 10.6084/m9.figshare.12096840
title: Additional file 6 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 6: File S1. General features of the S. flexneri 5a M90T chromosome annotated with Prokka [59].
DOI: 10.6084/m9.figshare.12096834
title: Additional file 4 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 4: Table S3. Transcriptional start sites determined in S. flexneri 5a M90T virulence plasmid (pWR100) with ReadExplorer [64, 113].
DOI: 10.6084/m9.figshare.12096837
title: Additional file 5 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 5: Table S4. Pseudogenes transcription abundance level. Reads counting per pseudogene was performed with htseq/0.9.1 [113] using stranded mode and pseudogene as a feature type. The total expression of pseudogenes is the average of the six libraries used for TSS determination.
DOI: 10.6084/m9.figshare.12096837.v1
title: Additional file 5 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 5: Table S4. Pseudogenes transcription abundance level. Reads counting per pseudogene was performed with htseq/0.9.1 [113] using stranded mode and pseudogene as a feature type. The total expression of pseudogenes is the average of the six libraries used for TSS determination.
DOI: 10.6084/m9.figshare.12096828
title: Additional file 3 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 3: Table S2. Transcriptional start sites determined in S. flexneri 5a M90T chromosome with ReadExplorer [64, 113].
DOI: 10.6084/m9.figshare.12096822
title: Additional file 2 of Does winter cold really limit the dengue vector Aedes aegypti in Europe?

description: Additional file 2: Table S1. Raw data of meta-analysis including raw data of own CT experiment. Table S2. Selected data of meta-analysis including raw data of own CT experiments (own data was not included in analysis). Table S3. Excluded data of meta-analysis and respective exclusion arguments. Table S4. Estimation of exposure time of field studies (meta-analysis). Table S5. Estimation of survivorship or mortality from graphs (meta-analysis). Table S6. Emergence of adults of CT2 experiment per treatment and species.
DOI: 10.6084/m9.figshare.12096828.v1
title: Additional file 3 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 3: Table S2. Transcriptional start sites determined in S. flexneri 5a M90T chromosome with ReadExplorer [64, 113].
DOI: 10.6084/m9.figshare.12096834.v1
title: Additional file 4 of Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination

description: Additional file 4: Table S3. Transcriptional start sites determined in S. flexneri 5a M90T virulence plasmid (pWR100) with ReadExplorer [64, 113].
DOI: 10.6084/m9.figshare.12096822.v1
title: Additional file 2 of Does winter cold really limit the dengue vector Aedes aegypti in Europe?

description: Additional file 2: Table S1. Raw data of meta-analysis including raw data of own CT experiment. Table S2. Selected data of meta-analysis including raw data of own CT experiments (own data was not included in analysis). Table S3. Excluded data of meta-analysis and respective exclusion arguments. Table S4. Estimation of exposure time of field studies (meta-analysis). Table S5. Estimation of survivorship or mortality from graphs (meta-analysis). Table S6. Emergence of adults of CT2 experiment per treatment and species.
DOI: 10.6084/m9.figshare.12096804
title: Additional file 1 of Characteristic features of the SERA multigene family in the malaria parasite

description: Additional file 1: Table S1. Accession numbers of Plasmodium sera genes. Gene ID in blue can be found in PlasmoDB (https://plasmodb.org/plasmo/). Others can be found in the NCBI database (https://www.ncbi.nlm.nih.gov/). Plasmodium sera genes categorized as Group I, II, III, and IV are shaded in pink, yellow, green and blue, respectively.
DOI: 10.6084/m9.figshare.12096804.v1
title: Additional file 1 of Characteristic features of the SERA multigene family in the malaria parasite

description: Additional file 1: Table S1. Accession numbers of Plasmodium sera genes. Gene ID in blue can be found in PlasmoDB (https://plasmodb.org/plasmo/). Others can be found in the NCBI database (https://www.ncbi.nlm.nih.gov/). Plasmodium sera genes categorized as Group I, II, III, and IV are shaded in pink, yellow, green and blue, respectively.
DOI: 10.6084/m9.figshare.12096789
title: Additional file 1 of Variation in base composition underlies functional and evolutionary divergence in non-LTR retrotransposons

description: Additional file 1. List of sequences used in this study and their base composition.
DOI: 10.6084/m9.figshare.12096789.v1
title: Additional file 1 of Variation in base composition underlies functional and evolutionary divergence in non-LTR retrotransposons

description: Additional file 1. List of sequences used in this study and their base composition.
DOI: 10.6084/m9.figshare.12096759
title: Additional file 4 of Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

description: Additional file 4: Table S3. List of multi-copy element annotations used in family-aware mapping.
DOI: 10.6084/m9.figshare.12096765
title: Additional file 5 of Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

description: Additional file 5: Table S4. Quantitation of multi-copy RNA family enrichment for 223 eCLIP datasets.
DOI: 10.6084/m9.figshare.12096759.v1
title: Additional file 4 of Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

description: Additional file 4: Table S3. List of multi-copy element annotations used in family-aware mapping.
DOI: 10.6084/m9.figshare.12096765.v1
title: Additional file 5 of Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

description: Additional file 5: Table S4. Quantitation of multi-copy RNA family enrichment for 223 eCLIP datasets.
DOI: 10.6084/m9.figshare.12096747
title: Additional file 7 of Hippocampal microglial activation triggers a neurotoxic-specific astrocyte response and mediates etomidate-induced long-term synaptic inhibition

description: Additional file 7. .
DOI: 10.6084/m9.figshare.12096747.v1
title: Additional file 7 of Hippocampal microglial activation triggers a neurotoxic-specific astrocyte response and mediates etomidate-induced long-term synaptic inhibition

description: Additional file 7. .
DOI: 10.6084/m9.figshare.12096735
title: Additional file 1 of Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

description: Additional file 1: Table S1. Accession identifiers for eCLIP datasets used in the manuscript.
DOI: 10.6084/m9.figshare.12096738
title: Additional file 6 of Hippocampal microglial activation triggers a neurotoxic-specific astrocyte response and mediates etomidate-induced long-term synaptic inhibition

description: Additional file 6. .
DOI: 10.6084/m9.figshare.12096744
title: Additional file 2 of Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

description: Additional file 2: Table S2. RNA binding protein function annotations, localization patterns, and predicted RNA binding domains.
DOI: 10.6084/m9.figshare.12096735.v1
title: Additional file 1 of Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

description: Additional file 1: Table S1. Accession identifiers for eCLIP datasets used in the manuscript.
DOI: 10.6084/m9.figshare.12096744.v1
title: Additional file 2 of Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

description: Additional file 2: Table S2. RNA binding protein function annotations, localization patterns, and predicted RNA binding domains.
DOI: 10.6084/m9.figshare.12096738.v1
title: Additional file 6 of Hippocampal microglial activation triggers a neurotoxic-specific astrocyte response and mediates etomidate-induced long-term synaptic inhibition

description: Additional file 6. .
DOI: 10.6084/m9.figshare.12096729
title: Additional file 5 of Hippocampal microglial activation triggers a neurotoxic-specific astrocyte response and mediates etomidate-induced long-term synaptic inhibition

description: Additional file 5. .
DOI: 10.6084/m9.figshare.12096723
title: Additional file 4 of Hippocampal microglial activation triggers a neurotoxic-specific astrocyte response and mediates etomidate-induced long-term synaptic inhibition

description: Additional file 4. .
DOI: 10.6084/m9.figshare.12096729.v1
title: Additional file 5 of Hippocampal microglial activation triggers a neurotoxic-specific astrocyte response and mediates etomidate-induced long-term synaptic inhibition

description: Additional file 5. .
DOI: 10.6084/m9.figshare.12096717
title: Additional file 3 of Hippocampal microglial activation triggers a neurotoxic-specific astrocyte response and mediates etomidate-induced long-term synaptic inhibition

description: Additional file 3. .
DOI: 10.6084/m9.figshare.12096723.v1
title: Additional file 4 of Hippocampal microglial activation triggers a neurotoxic-specific astrocyte response and mediates etomidate-induced long-term synaptic inhibition

description: Additional file 4. .
DOI: 10.6084/m9.figshare.12096717.v1
title: Additional file 3 of Hippocampal microglial activation triggers a neurotoxic-specific astrocyte response and mediates etomidate-induced long-term synaptic inhibition

description: Additional file 3. .
DOI: 10.6084/m9.figshare.12096711
title: Additional file 2 of Hippocampal microglial activation triggers a neurotoxic-specific astrocyte response and mediates etomidate-induced long-term synaptic inhibition

description: Additional file 2. .
DOI: 10.6084/m9.figshare.12096711.v1
title: Additional file 2 of Hippocampal microglial activation triggers a neurotoxic-specific astrocyte response and mediates etomidate-induced long-term synaptic inhibition

description: Additional file 2. .