cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5706370
title: Data for Past terrestrial hydroclimate sensitivity controlled by Earth System Feedbacks

description: This folder contains PlioMIP2 ensemble data and CESM2 simulations used in Feng et al., Past terrestrial hydroclimate sensitivity controlled by Earth System Feedbacks (2022). Here is some useful information: 1. Experiment IDs of CESM2 experiments are described in the Method section of the manuscript. The first dimension of variables in ensemble files reflects model IDs : "CCSM4", "CESM1", "CESM2", "COSMOS", "IPSL-CM6", "MIROC4m", "NorESM1-F", "HadCM3", "EC-Earth3.3", "IPSL-CM5", "IPSL-CM5A2", "HadGEM3", "GISS-E2-1G". 2. The naming convention of variables in ensemble files follows CMIP6 convention. The naming convention of CESM2 variables follows the convention of the model. 3. The script pe_budget_season_new.ncl produces moisture budget decomposition. The results are shown in Fig. 4 of the manuscript.
DOI: 10.5281/zenodo.7500780
title: LESO-CN-O3-HOURLY

description: Hourly surface ozone (O3) concentration in China (mainland) on a 0.1 deg scale. The date range is from 2012 to 2021. This is the product of the LESO framework. The algorithm publications are 'Learning Surface Ozone From Satellite Columns (LESO): A Regional Daily Estimation Framework for Surface Ozone Monitoring in China' and 'Satellite-derived estimates of surface ozone by LESO: Extended application and performance evaluation'.
description: Chinese Academy of Sciences (CAS) Pioneering Initiative Talents Program under Grant E1RC2WB2
DOI: 10.5281/zenodo.7500782
title: LESO-EU-O3-HOURLY

description: Hourly surface ozone (O3) concentration in Europe on a 0.1 deg scale. The date range is from 2012 to 2021. This is the product of the LESO framework. The algorithm publications are 'Learning Surface Ozone From Satellite Columns (LESO): A Regional Daily Estimation Framework for Surface Ozone Monitoring in China' and 'Satellite-derived estimates of surface ozone by LESO: Extended application and performance evaluation'.
description: Chinese Academy of Sciences (CAS) Pioneering Initiative Talents Program under Grant E1RC2WB2
DOI: 10.5281/zenodo.7502204
title: LESO-CN&EU&US-O3-DAILY/MONTHLY/YEARLY

description: Hourly to yearly surface ozone (O3) concentration in China (mainland), Europe, and the United States on a 0.1 deg scale. The date range is from 2012 to 2021. This is the product of the LESO framework. The algorithm publications are 'Learning Surface Ozone From Satellite Columns (LESO): A Regional Daily Estimation Framework for Surface Ozone Monitoring in China' and 'Satellite-derived estimates of surface ozone by LESO: Extended application and performance evaluation'.
description: Chinese Academy of Sciences (CAS) Pioneering Initiative Talents Program under Grant E1RC2WB2
DOI: 10.5281/zenodo.8091306
title: Supplemental Files

description: Supplemental Tables 1 and 2 of the original manuscript entitled "<strong><em>Stenotrophomonas goyi </em>sp. nov., a novel bacterium associated with the alga <em>Chlamydomonas reinhardtii</em> </strong>" Supplemental Table 1: Tentative genome annotation of Stenotrophomonas goyi (derived from the RAST server) Supplemental Table 2: Orthology gene assignments of Stenotrophomonas goyi (derived from the BlastKOALA sever)
DOI: 10.6084/m9.figshare.22226176
title: Supplementary Material for: Alterations in the proteome of developing neocortical synaptosomes in the absence of MET signaling revealed by comparative proteomics

description: Alterations in the expression of genes encoding proteins involved in synapse formation, maturation and function are a hallmark of many neurodevelopmental and psychiatric disorders. For example, there is reduced neocortical expression of the MET receptor tyrosine kinase (MET) transcript and protein in autism spectrum disorder and Rett syndrome. Preclinical in vivo and in vitro models manipulating MET signaling reveal that the receptor modulates excitatory synapse development and maturation in select forebrain circuits. The molecular adaptations underlying the altered synaptic development remain unknown. We performed a comparative mass spectrometry analysis of synaptosomes generated from the neocortex of wild type and Met null mice during the peak of synaptogenesis (postnatal day 14; data are available from ProteomeXchange with identifier PXD033204). The analyses revealed broad disruption of the developing synaptic proteome in the absence of MET, consistent with the localization of MET protein in pre- and postsynaptic compartments, including proteins associated with the neocortical synaptic MET interactome and those encoded by syndromic and ASD risk genes. In addition to an overrepresentation of altered proteins associated with the SNARE complex, multiple proteins in the ubiquitin-proteasome system and associated with the synaptic vesicle, as well as proteins that regulate actin filament organization and synaptic vesicle exocytosis/endocytosis, were disrupted. Taken together, the proteomic changes are consistent with structural and functional changes observed following alterations in MET signaling. We hypothesize that the molecular adaptations following Met deletion may reflect a general mechanism that produces circuit-specific molecular changes due to loss or reduction of synaptic signaling proteins.
DOI: 10.6084/m9.figshare.23578896
title: Supplementary Material for: Effects of Acute Exercise on Affect, Anxiety, and Self-Esteem in Poly-Substance Dependent Inpatients

description: <b><i>Introduction:</i></b> Negative affect and anxiety frequently precede the onset of drug use in those with substance use disorder (SUD). Low self-esteem may increase the risk of relapse. We examined the short-term effects of exercise on affect, anxiety, and self-esteem in inpatients with poly-SUD. <b><i>Methods:</i></b> This is a multicenter randomized control trial (RCT) with a crossover design. Thirty-eight inpatients (37.3 ± 6.4 years; 84% male) from three clinics participated in 45 min of soccer, circuit training, and control condition (psychoeducation) in a random order. Positive and negative affect (PANAS), state anxiety (single item), and self-esteem (Rosenberg SE-scale) were measured immediately before, immediately after, 1-h, 2-h, and 4-h post-exercise. Heart rate and ratings of perceived exertion were taken. Effects were assessed using linear mixed effects models. <b><i>Results:</i></b> Compared to the control condition, there were significant post-exercise improvements in positive affect (β = 2.99, CI = 0.39: 5.58), self-esteem (β = 1.84, CI = 0.49: 3.20), and anxiety (β = −0.69, CI = −1.34: −0.04) after circuit training (shown) and soccer. Effects persisted 4-h post-exercise. Reductions in negative affect were observed 2-h (circuit training: β = −3.39, CI = −6.35: −1.51) and 4-h (soccer: β = −3.71, CI = −6.03: −1.39) post-exercise, respectively. <b><i>Conclusion:</i></b> Moderately strenuous exercise undertaken in naturalistic settings may improve mental health symptoms in poly-SUD inpatients for up to 4-h post-exercise.
DOI: 10.17632/gwjk2cxsf4.1
title: ISS images in "Dual spatially resolved transcriptomics for human host-pathogen colocalization studies in FFPE tissue sections."

description: Images from the validation of spatial detection of SARS-CoV-2 with in-situ sequencing (ISS).
DOI: 10.17632/xb2w7xvs2b.1
title: Dual spatially resolved transcriptomics for human host-pathogen colocalization studies in FFPE tissue sections

description: Gene count matrices and corresponding tissue stained images from ST experiment, and images from the computational validation of RNAscope and ISS data in the paper titled "Dual spatially resolved transcriptomics for human host-pathogen colocalization studies in FFPE tissue sections".
DOI: 10.5281/zenodo.7886630
title: Emissivity spectra retrieved from airborne observations collected during the MACSSIMIZE field campaign

description: Emissivity values retrieved from observations made using the MARSS and ISMAR radiometers on board the UK's BAe-146-301 (FAAM) atmospheric research aircraft during the MACSSIMIZE field campaign.
DOI: 10.5281/zenodo.8131793
title: The recompiled circuit V from the preparation of the AKLT state

description: This is the json file used for the recompiled optimized circuit \(\hat{V}\)from the paper 'High-fidelity realization of the AKLT state on a NISQ-era quantum processor' (arXiv link: https://arxiv.org/pdf/2210.13840.pdf). See Fig. 3. For the CNOT gate, the first and second index represents the conventions of the CNOT gate where the first index is for the controlled qubit. For the U3 gate, it follows the Qiskit convention where \(U3(\theta, \phi, \lambda) = U(\theta, \phi, \lambda)\): the first three numbers are for the parameters of the U3 gate, and the last one is for the qubit index.
description: {"references": ["Data associated with arXiv: 2210.13840"]}
DOI: 10.5285/cdbca137-0bb3-4281-b872-399a4df8e946
title: Hidden Crisis Project, Survey 2 dataset: hand pump borehole diagnostic tests in Ethiopia, Uganda and Malawi

description: This dataset provides a detailed physical science dataset to the groundwater resource and engineering properties of 150 handpumped borehole supplies (HPBs) across Ethiopia, Malawi and Uganda, surveyed in 2017 as part of the UPGro Hidden Crisis project. The dataset includes measurements of aquifer resource potential, groundwater quality, downhole construction and condition of handpump components, and borehole construction. Detailed social science data were also collected as part of the second survey phases of the Hidden Crisis project. However, these data are reported as a separate (associated) dataset to the physical science Survey 2 dataset – and are available from Economic and Social Research Council (ESRC) UK Data Service (UKDS). The UPGro Hidden Crisis project (2015-20) was an international research project aimed at developing a robust evidence base and understanding of the complex and multi-faceted causes which underlie the current high failure rates of many new groundwater supplies in Africa. The project was jointly funded by: DFID, NERC and ESRC as part of the UPGro programme (Unlocking the Potential of Groundwater for the Poor). The project carried out the research work in three countries - Ethiopia, Malawi and Uganda – to examine functionality and performance of groundwater supplies in a range of hydrogeological, climatic and social, institutional and governance environments in East Africa. The work focused specifically on examining the functionality of HPBs – these being the main form of improved community water supply across rural Africa. The Survey 2 dataset, is major dataset developed by the project.
DOI: 10.6084/m9.figshare.23850786
title: Supplementary Material for: Impact of Obesity on Postoperative Complications After Lateral Skull Base Surgery: A Systematic Review

description: Introduction: The relationship between obesity and complications after lateral skull base tumor resection is not clear. There is conflicting evidence regarding the incidence of postoperative complications in this patient population. The purpose of this study is to examine the relationship between obesity and outcomes following lateral skull base tumor resection, Data Sources: PubMed, Embase, CINAHL, and Cochrane CENTRAL Methods: Included studies assessed the relationship between obesity and outcomes following lateral skull base tumor removal. Studies with ≤5 patients, pediatric patients, duplicate patient populations, or insufficient data were excluded. Two independent investigators reviewed each study for inclusion. A third reviewer served as a tie-breaker for any conflicts. Extracted data includes patient demographics, tumor pathology, surgical approach, and postoperative outcomes including incidence of CSF leak and other postoperative complications, length of stay (LOS), and readmission and reoperation rates. Descriptive statistics were used to compare postoperative outcomes for obese and non-obese controls. Results: 14 studies met final inclusion criteria. Nine studies evaluated the relationship between obesity and CSF leaks. Four studies found a significant increase in post-operative CSF leak in obese patients compared to non-obese controls. The remaining studies trended towards an increased incidence of CSF leak in the obese population however did not reach statistical significance. One out of seven studies found that obesity increased post-operative LOS, and one out of five studies found that obesity increased reoperation rates following tumor resection. Conclusions: Based on the results, obesity does not appear to increase length of stay, readmission, or reoperation rates after lateral skull base tumor resection. The relationship between obesity and post-operative CSF leak however warrants further analysis.
DOI: 10.25346/s6/c6csoz
title: Deaths in Custody Autopsy Analysis Protocol

description: This protocol provides the methodological basis for our scrutiny of medical and legal documents made to chronicle deaths in county custody in Los Angeles, CA. We aim to understand if and how the practices of medical examiners support a lack of accountability for correctional officers/deputies and the carceral institutions that are potentially involved in these deaths.
DOI: 10.25346/s6/joouym
title: Autopsy Analysis of Deaths in LA County Jail, 2009-2018

description: This data was abstracted from autopsies of people who died while incarcerated in the Los Angeles County Jail system between the years of 2009 and 2018. We abstracted data from the 58 autopsies made available to us from the responsive documents for a public records request made to the Los Angeles County Department of Medical Examiner-Coroner (DME-C) in 2019 requesting autopsies for all deaths that occurred in LA County Jail custody between 2009 and 2019. We abstracted data across 84 different variables to allow for further analysis, leading to both better understanding of the circumstances of death in jail and the practices of the LA DME-C in investigating these deaths. Carefully selected language is used in the full autopsy analysis protocol with the intention of understanding the provenance of assertions of decedent health and mental health histories, as well as potential conflicts of interest, and failures to perform best practices of in-custody death investigations. In other words, the variables present information about the person prior to their death, the investigation right after the death, as well as the processes that occurred during the autopsy including subsequent tests conducted on the body.
DOI: 10.5066/p9wum58e
title: Interlab comparison of strength and permeability of rock in laboratory experiments

description: The data are time series of laboratory strength and permeability measurements of 5 rock types. The tests were conducted as part of an interlaboratory comparison to determine repeatability of measurements using different test equipment and measurement techniques. These data represent the USGS contribution to the study. Other contributing organizations are archiving data sets separately.
DOI: 10.5281/zenodo.8256215
title: Risk of Bias 2 Data: Cochrane MHFA Systematic Review

description: These files contain detailed information about how the authors reached their Risk of Bias 2 judgements for results included in the Cochrane review 'MHFA as a tool for improving mental health and well-being'
DOI: 10.6084/m9.figshare.22220179
title: Supplementary Material for: Identification of a splicing variant c.3813-3A&gt;G in NPHP3 by reanalysis of whole exome sequencing in a Chinese boy with nephronophthisis

description: Nephronophthisis is an autosomal recessive cystic kidney disease characterized by tubular injury and commonly results in kidney failure. We reported a case of 4-year-old Chinese boy presented with severe anemia, kidney and liver dysfunction. Whole exome sequencing (WES) was performed to identify the candidate variant with a negative result initially. After complete collection of clinical information, reanalysis of WES identified a homozygous NPHP3 variant c.3813-3A&gt;G (NM_153240.4). The effect on mRNA splicing of the intronic variant was predicted through software (three in silico splice tools). Furthermore, in vitro minigene assay was conducted to validate the predicted deleterious effects of the intronic variant. All of the splice prediction programs and minigene assay indicated that the variant had an impact on the normal splicing pattern of NPHP3. Our study confirmed the effect of the c.3813-3A&gt;G variant on NPHP3 splicing in vitro, which gives additional evidence for the clinical significance of the variant and provides a basis for genetic diagnosis of nephronophthisis 3. In addition, we think that it is essential to reanalyze WES data after the complete clinical information collection to avoid missing some important candidate variants.
DOI: 10.17189/1519602
title: CASSINI ORBITER MAG CALIBRATED SUMMARY 1 MINUTE AVERAGE V2.0
DOI: 10.21947/1401991
title: Surface Meteorological Station - UND 17m, (3) Sonics 3m 10m 17m, (2) T/RH 3m 17m, Physics site-2 - Raw Data

description: The data included features wind, temperature, and turbulence measurements.
DOI: 10.21947/1402004
title: Surface Meteorological Station - UND 10m, (2) Sonics 3m 10m, (2) T/RH 3m 10m, Physics site-11 - Raw Data

description: The data included features wind, temperature, and turbulence measurements.
DOI: 10.3886/icpsr09731
title: Geographic Reference File--Names, 1990 (Census Version): [United States]
title: Archival Version

description: This dataset contains the names that correspond with the 1990 Census high-level geographic area codes contained in the Topologically Integrated Geographic Encoding and Referencing System, or TIGER/Line files. Included are the record type, defining code(s), and name for each geographic entity.
description: Datasets: 
 
 DS0: Study-Level Files 
 DS1: Alabama 
 DS2: Alaska 
 DS4: Arizona 
 DS5: Arkansas 
 DS6: California 
 DS8: Colorado 
 DS9: Connecticut 
 DS10: Delaware 
 DS11: District of Columbia 
 DS12: Florida 
 DS13: Georgia 
 DS15: Hawaii 
 DS16: Idaho 
 DS17: Illinois 
 DS18: Indiana 
 DS19: Iowa 
 DS20: Kansas 
 DS21: Kentucky 
 DS22: Louisiana 
 DS23: Maine 
 DS24: Maryland 
 DS25: Massachusetts 
 DS26: Michigan 
 DS27: Minnesota 
 DS28: Mississippi 
 DS29: Missouri 
 DS30: Montana 
 DS31: Nebraska 
 DS32: Nevada 
 DS33: New Hampshire 
 DS34: New Jersey 
 DS35: New Mexico 
 DS36: New York 
 DS37: North Carolina 
 DS38: North Dakota 
 DS39: Ohio 
 DS40: Oklahoma 
 DS41: Oregon 
 DS42: Pennsylvania 
 DS44: Rhode Island 
 DS45: South Carolina 
 DS46: South Dakota 
 DS47: Tennessee 
 DS48: Texas 
 DS49: Utah 
 DS50: Vermont 
 DS51: Virginia 
 DS53: Washington 
 DS54: West Virginia 
 DS55: Wisconsin 
 DS56: Wyoming 
 DS60: American Samoa 
 DS64: Federated States of Micronesia 
 DS66: Guam 
 DS68: Marshall Islands 
 DS69: Northern Mariana Islands 
 DS70: Palau 
 DS72: Puerto Rico 
 DS74: United States Minor Outlying Islands 
 DS78: Virgin Islands of the United States
description: This collection contains files for each state, the District of Columbia, Puerto Rico, and eight outlying areas of the United States.
description: The 50 states, the District of Columbia, and eight outlying areas of the United States.
DOI: 10.6084/m9.figshare.22100234
title: Supplementary Material for: Two Novel Human Leukocyte Antigen Alleles Are Associated with Decreased Risk of Onychomycosis in a Large Cohort of Danish Blood Donors

description: <b><i>Introduction:</i></b> Antigen presentation and antimicrobial immune responses involve the human leukocyte antigen (HLA) system. Onychomycosis is primarily caused by dermatophytes and affects around 5.5% of the population worldwide. Yet, only limited data exist on the associations between the HLA system and onychomycosis. Thus, the objective of the study was to investigate if there is an association between HLA alleles and onychomycosis. <b><i>Methods:</i></b> Participants in the Danish Blood Donor Study were defined as cases of onychomycosis and controls based on antifungal prescriptions in the national prescription registry. Associations were investigated using logistic regressions adjusted for confounders and were Bonferroni corrected for multiple tests. <b><i>Results:</i></b> A total of 3,665 participants were considered onychomycosis cases, and 24,144 participants were considered controls. We found two protective HLA alleles of onychomycosis: DQB1*06:04, odds ratios (OR) 0.80 (95% confidence interval (CI) 0.71–0.90), and DRB1*13:02, OR 0.79 (95% CI: 0.71–0.89). <b><i>Conclusion:</i></b> The finding of two novel protective alleles of onychomycosis indicates that certain HLA alleles have certain antigen presentation properties affecting the risk of fungal infection. These findings may provide the basis for future research identifying immunologically relevant antigens of fungi causing onychomycosis, which could ultimately lead to targets of new drugs with antifungal effects.
DOI: 10.6084/m9.figshare.22100555
title: Supplementary Material for: Rosuvastatin Potentiates Gonadotropin-Lowering Effects of Metformin in Postmenopausal Women: A Pilot Study

description: <b><i>Introduction:</i></b> Metformin reduces elevated levels of FSH and LH. In some studies, gonadotroph secretory function was inhibited by statins. The aim of the present study was to investigate whether statin therapy modulates the impact of metformin on hypothalamic-pituitary-gonadal axis activity in postmenopausal women. <b><i>Methods:</i></b> The study population included 60 postmenopausal women with prediabetes, 40 of whom, because of high cardiovascular risk, received rosuvastatin (20–40 mg daily). One group of rosuvastatin-treated women (group A, <i>n</i> = 23) and all statin-naïve patients (group B, <i>n</i> = 20) were matched for age, glucose homeostasis markers, and gonadotropin levels. Over the entire study period (6 months), these women received metformin. The third group (group C) included 17 rosuvastatin-treated women refusing metformin treatment. We assessed baseline and follow-up plasma lipids, glucose homeostasis markers, and concentrations of FSH, LH, thyrotropin, prolactin, adrenocorticotropic hormone (ACTH), insulin-like growth factor-1, estradiol, progesterone, and anti-Müllerian hormone (in selected patients). <b><i>Results:</i></b> Fifty-three women (18 in groups A and B and 17 in group C) completed the study. At study entry, rosuvastatin-treated and statin-naïve women differed in levels of total cholesterol, LDL-cholesterol, and ACTH. In statin-naïve women, metformin reduced FSH levels and tended to reduce LH levels. In rosuvastatin-treated women, metformin decreased FSH and LH levels, and both effects were stronger than in statin-naïve women. Although observed in both groups, the impact on glucose homeostasis markers was more pronounced in individuals not receiving statin therapy. Metformin treatment did not affect circulating levels of lipids, thyrotropin, prolactin, ACTH, insulin-like growth factor-1, estradiol, and anti-Müllerian hormone. In group C, plasma lipids, glucose homeostasis markers, and hormone levels remained at a similar level throughout the study period. <b><i>Conclusion:</i></b> The obtained results indicate that statin therapy may enhance gonadotropin-lowering effects of metformin.