cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17007308.v1
title: Additional file 1 of A joint analysis using exome and transcriptome data identifiescandidate polymorphisms and genes involved with umbilical hernia in pigs

description: Additional file 1: Table S1. Variants (SNPs and InDels) identified in the whole-exome and RNA sequencing that differed between normal and umbilical hernia-affected pigs, and their respective genotypes. Table S2. Total number of variants (SNPs and InDels) identified in the whole-exome sequencing that differed between normal and umbilical hernia-affected pigs and its annotation and consequence predicted with the VEP tool. Table S3. Total number of variants (SNPs and InDels) identified in the transcriptome analysis that differed between normal and umbilical hernia-affected pigs and its annotation and consequence predicted with the VEP tool. Table S4. Polymorphisms and genes associated to umbilical hernia in pigs annotated in the exome and transcriptome analyses. Table S5. GO biological process enriched in the DAVID (A) and Panther (B) databases based on the candidate genes identified for umbilical hernia through the analyses of the whole exome and RNA sequencing data. Fig. S1. Electropherogram of all five variants chosen to be validated with Sanger methodology
DOI: 10.6084/m9.figshare.17066214
title: Additional file 1 of Genome-wide association analysis uncovers the genetic architecture of tradeoff between flowering date and yield components in sesame

description: Additional file 1: Supplementary Tables. Table S1. List of the sesame lines from the SCHUJI panel and their geographical origin. Table S2. Cross-validation error for K=1-10. Table S3. Mean, standard deviations (SD) and coefficient of variation (CV) of the measured traits. Table S4. Phenotypic Correlations and P-values among the measured traits. Table S5. Cluster means from the K-means clustering analysis. Table S6. Fixation index (FST) values between the subpopulation in the panel. Table S7. Genomic heritability estimates of the measured traits. Table S8. Genomic correlations among the measured traits. Table S9. Significant genetic markers (SNPs) that are associated with the traits in the experiment. Table S10. Candidate genes for flowering date and seed-yield traits.
DOI: 10.6084/m9.figshare.17066214.v1
title: Additional file 1 of Genome-wide association analysis uncovers the genetic architecture of tradeoff between flowering date and yield components in sesame

description: Additional file 1: Supplementary Tables. Table S1. List of the sesame lines from the SCHUJI panel and their geographical origin. Table S2. Cross-validation error for K=1-10. Table S3. Mean, standard deviations (SD) and coefficient of variation (CV) of the measured traits. Table S4. Phenotypic Correlations and P-values among the measured traits. Table S5. Cluster means from the K-means clustering analysis. Table S6. Fixation index (FST) values between the subpopulation in the panel. Table S7. Genomic heritability estimates of the measured traits. Table S8. Genomic correlations among the measured traits. Table S9. Significant genetic markers (SNPs) that are associated with the traits in the experiment. Table S10. Candidate genes for flowering date and seed-yield traits.
DOI: 10.6084/m9.figshare.16908490.v3
title: Children’s online collaborative storytelling during 2020 COVID-19 home confinemen

description: Collaborative storytelling encourages prosocial behaviors and shared representations when the group works towards a common goal. Thus, it can be a valuable pedagogical tool in traditional and distance education. This study investigates children's storytelling and collaborative behaviors during an online collaborative storytelling activity throughout the 2020 SARS-CoV-2 home confinement in Spain. From 1st to 5th grade of primary school, one-hundred-sixteen students conducted weekly activity sessions in a virtual space structured and adapted to their digital skills. The activity aimed to promote storytelling, collaboration, and deal with the social distancing derived from the home confinement and closure of schools due to the SARS-CoV-2 pandemic. Participants and four facilitators met up in a virtual classroom platform with several Google Meet rooms. The activity started in the main videocall room, where facilitators proposed a topic to the students from an image. Then, they asked children to shift into small groups in different secondary video call rooms to create their stories. Finally, children came back to the main videocall room to tell and share their stories. Facilitators observed and registered participants' platform use and collaboration. Also, stories were transcribed verbatim and analyzed using the Bears Family Integrated Story Analysis System. Moreover, three categories related to the SARS-CoV-2 pandemic were added to the story content analysis. Results indicate that primary students worked collaboratively in an online environment, with some methodology adaptations to 1st and 2nd grade because of a more limited digital autonomy. Story lengths tend to be reduced with age, while cohesion and story structure show more stable values in all grades. All stories are balanced in positive and negative contents, especially in characters' behavior and relationships, while story problems remain at positive solution levels. In addition, the pandemic theme emerged directly or indirectly in only 15% of the stories.
DOI: 10.6084/m9.figshare.16908490
title: Children’s online collaborative storytelling during 2020 COVID-19 home confinemen

description: Collaborative storytelling encourages prosocial behaviors and shared representations when the group works towards a common goal. Thus, it can be a valuable pedagogical tool in traditional and distance education. This study investigates children's storytelling and collaborative behaviors during an online collaborative storytelling activity throughout the 2020 SARS-CoV-2 home confinement in Spain. From 1st to 5th grade of primary school, one-hundred-sixteen students conducted weekly activity sessions in a virtual space structured and adapted to their digital skills. The activity aimed to promote storytelling, collaboration, and deal with the social distancing derived from the home confinement and closure of schools due to the SARS-CoV-2 pandemic. Participants and four facilitators met up in a virtual classroom platform with several Google Meet rooms. The activity started in the main videocall room, where facilitators proposed a topic to the students from an image. Then, they asked children to shift into small groups in different secondary video call rooms to create their stories. Finally, children came back to the main videocall room to tell and share their stories. Facilitators observed and registered participants' platform use and collaboration. Also, stories were transcribed verbatim and analyzed using the Bears Family Integrated Story Analysis System. Moreover, three categories related to the SARS-CoV-2 pandemic were added to the story content analysis. Results indicate that primary students worked collaboratively in an online environment, with some methodology adaptations to 1st and 2nd grade because of a more limited digital autonomy. Story lengths tend to be reduced with age, while cohesion and story structure show more stable values in all grades. All stories are balanced in positive and negative contents, especially in characters' behavior and relationships, while story problems remain at positive solution levels. In addition, the pandemic theme emerged directly or indirectly in only 15% of the stories.
DOI: 10.6084/m9.figshare.12927712
title: The significance of comorbidity burden among older patients undergoing abdominal emergency or elective surgery

description: Comorbidities may cause complications in perioperative care and affect treatment outcomes of older patients. The study aim was to analyse comorbidity burdens with respect to their predictive power in outcome prediction in elderly qualified for abdominal elective or emergency surgery. Consecutive patients undergoing major abdominal surgery between 2010 and 2017 at a secondary referral hospital were included in the retrospective study, for a total of 1586 patients. To explain the relationship between the comorbidity types and 30-day mortality and morbidity logistic regression analysis was performed. Morbidity was assessed using the Clavien-Dindo Score. Major complications were defined as a C-D score ≥ 3. We also presented the data concerning need for reoperation and ICU admission. 85.9% of patients had at least one comorbidity. In the group of emergency patients age and number of comorbidities were independent risk factors of 30-day mortality and major morbidity. In elective patients age, dementia (OR:3.52; 95%CI:1.35–9.20) and kidney disease (OR:1.64; 95%CI:1.04–2.57) were found to be independent risk factors of 30-day postoperative mortality. Age (1.04; 95%CI:1.00–1.08) and heart disease (OR:1.30, 95%CI:1.04–1.63) were found to be independent risk factors of 30-day major morbidity. In patients undergoing elective surgery 30-day mortality and morbidity was associated with age. 30-day mortality, but not morbidity was associated with kidney disease and dementia. 30-day morbidity, but not mortality, was associated with heart disease.
DOI: 10.6084/m9.figshare.12927712.v1
title: The significance of comorbidity burden among older patients undergoing abdominal emergency or elective surgery

description: Comorbidities may cause complications in perioperative care and affect treatment outcomes of older patients. The study aim was to analyse comorbidity burdens with respect to their predictive power in outcome prediction in elderly qualified for abdominal elective or emergency surgery. Consecutive patients undergoing major abdominal surgery between 2010 and 2017 at a secondary referral hospital were included in the retrospective study, for a total of 1586 patients. To explain the relationship between the comorbidity types and 30-day mortality and morbidity logistic regression analysis was performed. Morbidity was assessed using the Clavien-Dindo Score. Major complications were defined as a C-D score ≥ 3. We also presented the data concerning need for reoperation and ICU admission. 85.9% of patients had at least one comorbidity. In the group of emergency patients age and number of comorbidities were independent risk factors of 30-day mortality and major morbidity. In elective patients age, dementia (OR:3.52; 95%CI:1.35–9.20) and kidney disease (OR:1.64; 95%CI:1.04–2.57) were found to be independent risk factors of 30-day postoperative mortality. Age (1.04; 95%CI:1.00–1.08) and heart disease (OR:1.30, 95%CI:1.04–1.63) were found to be independent risk factors of 30-day major morbidity. In patients undergoing elective surgery 30-day mortality and morbidity was associated with age. 30-day mortality, but not morbidity was associated with kidney disease and dementia. 30-day morbidity, but not mortality, was associated with heart disease.
DOI: 10.6084/m9.figshare.16909234
title: Evaluating public health spending in the Philippines using an autoregressive distributed lag (ARDL) approach

description: This study aims to identify the determinants of the Philippine public health expenditure to understand and help the country's policymakers address issues concerning the country's rising yet small share of public health spending. Using time-series data from 1961 to 2019, this study employed the Autoregressive Distributed Lag (ARDL) approach to analyze the long- and short-run relationships between the Philippine national government’s health spending and select economic and health factors.
DOI: 10.6084/m9.figshare.17009983.v1
title: Geomorphology of the Tafilalt Basin, South-East Morocco – implications for fluvial–aeolian dynamics and wind regimes

description: The hyper-arid Taflilat Basin, South-East Morocco, is dominated by two ephemeral fluvial networks and several ergs with various dune forms from barchans to mega dunes. Especially the genesis of the star dunes remains an open research question. Therefore, a new multi-sheet geomorphological map describes the surface dynamics in the basin. Identification of major surface features was done with remote sensing data and on-site surveys. The analyses were used to identify all different landscape units. Additionally, aeolian features are emphasized to deduce current wind directions. The identification of two opposite wind fields was possible and a spatial correlation in the fluvial-aeolian system is detected. The border of the opposite wind fields crosses Erg Chebbi. Hence, the star dunes are under the influence of a multimodal wind system. Overall, this new geomorphological map strengthens the understanding of the fluvial-aeolian interaction in the Tafilalt Basin and sets a baseline for ongoing in-depth studies.
DOI: 10.34740/kaggle/dsv/2841984
title: CytoImageNet
DOI: 10.5281/zenodo.5717819
title: Biomass database

description: #The version included data of wind speed tune test and using MWR=7.0 to be control run. #Record all of the datasets and scripts.
DOI: 10.5281/zenodo.4493082
title: Biomass database

description: #The version included data of wind speed tune test and using MWR=7.0 to be control run. #Record all of the datasets and scripts.
DOI: 10.25919/qdk0-ys13
title: Australian Midlatitudes Rainfall

description: Annual and seasonal rainfall data for selected locations and three study areas was produced to assist identifying statistically significant long-term trends between 1907 and 2018. The selected weather stations represent different climate and rainfall zones in each study area. The objective is to compare year-to-year variability in precipitation with any potential long-term trend and to understand if recent experience of a drying trend in parts of Australia are part of a longer-term trend.
DOI: 10.6084/m9.figshare.13537118
title: GPS coseismic deformation caused by Jinghe Earthquake

description: GPS Coseismic deformation caused by Jinghe earthquake are attached below. SAR images can be downloaded at https://search.asf.alaska.edu/#/?zoom=6.10633315563357¢er=81.409744,43.680647&polygon=POLYGON((81.7363 43.9605,81.818 43.9605,81.818 44.3266,81.7363 44.3266,81.7363 43.9605))&start=2017-08-01T00:00:00Z&end=2017-08-27T23:59:00Z&productTypes=SLC&beamModes=IW&resultsLoaded=true&granule=S1A_IW_SLC__1SDV_20170820T122636_20170820T122704_018007_01E393_1553-SLC&subtypes=SA
DOI: 10.6084/m9.figshare.13537118.v2
title: GPS coseismic deformation caused by Jinghe Earthquake

description: GPS Coseismic deformation caused by Jinghe earthquake are attached below. SAR images can be downloaded at https://search.asf.alaska.edu/#/?zoom=6.10633315563357¢er=81.409744,43.680647&polygon=POLYGON((81.7363 43.9605,81.818 43.9605,81.818 44.3266,81.7363 44.3266,81.7363 43.9605))&start=2017-08-01T00:00:00Z&end=2017-08-27T23:59:00Z&productTypes=SLC&beamModes=IW&resultsLoaded=true&granule=S1A_IW_SLC__1SDV_20170820T122636_20170820T122704_018007_01E393_1553-SLC&subtypes=SA
DOI: 10.6084/m9.figshare.13537118.v1
title: Table 3.docx

description: GPS Coseismic deformation caused by Jinghe earthquake
DOI: 10.6084/m9.figshare.17067287
title: Supplementary Material for: Medication Burden and Prescribing Patterns in Patients on Hemodialysis in the USA, 2013–2017

description: <b><i>Introduction:</i></b> The medication burden of patients with end-stage renal disease (ESRD) on hemodialysis, a patient population with a high comorbidity burden and complex care requirements, is among the highest of any of the chronic diseases. The goal of this study was to describe the medication burden and prescribing patterns in a contemporary cohort of patients with ESRD on hemodialysis in the USA. <b><i>Methods:</i></b> We used the United States Renal Data System database from January 1, 2013, and December 31, 2017, to quantify the medication burden of patients with ESRD on hemodialysis aged ≥18 years. We calculated the average number of prescription medications per patient during each respective year (January–December), number of medications within classes, including potentially harmful medications, and trends in the number of medications and classes over the 5-year study period. <b><i>Results:</i></b> We included a total of 163,228 to 176,133 patients from 2013 to 2017. The overall medication burden decreased slightly, from a mean of 7.4 (SD 3.8) medications in 2013 to 6.8 (SD 3.6) medications in 2017. Prescribing of potentially harmful medications decreased over time (74.0% with at least one harmful medication class in 2013–68.5% in 2017). In particular, the prescribing of non-benzodiazepine hypnotics, benzodiazepines, and opioids decreased from 2013 to 2017 (12.2%–6.3%, 23.4%–19.3%, and 60.0%–53.4%, respectively). This trend was consistent across subgroups of age, sex, race, and low-income subsidy status. <b><i>Conclusions:</i></b> Patients with ESRD on hemodialysis continued to have a high overall medication burden, with a slight reduction over time accompanied by a decrease in prescribing of several classes of harmful medications. Continued emphasis on assessment of appropriateness of high medication burden in patients with ESRD is needed to avoid exposure to potentially harmful or futile medications in this patient population.
DOI: 10.25422/azu.data.16822399.v1
title: Data for "Upper Gila, Salt, and Verde Rivers: Arid Land Rivers in a Changing Climate"

description: The datasets include monthly and annual streamflow, precipitation, and temperature data, for the years 1921-2019, for the Upper Gila, Salt, and Verde River basins in southwestern New Mexico and Arizona. The data were plotted and analyzed to determine the main climatic controls on streamflow.<br><br><i>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</i>
DOI: 10.14457/tu.the.2020.586
title: มาตรการทางกฎหมายในการจัดซื้อจัดจ้างสินค้าและบริการของภาครัฐที่เป็นมิตรต่อสิ่งแวดล้อมของประเทศไทย

description: ปัจจุบันโลกกำลังประสบปัญหาการเปลี่ยนแปลงสภาพภูมิอากาศ เนื่องจากการดำเนินกิจกรรมต่างๆ ของมนุษย์ที่ส่งผลให้ระดับความเข้มข้นของก๊าซเรือนกระจกในชั้นบรรยากาศเพิ่มสูงขึ้น ซึ่งปัญหาเหล่านี้น่ากังวลเป็นเป็นอย่างมากเพราะในปัจจุบันยิ่งจะทวีความรุนแรงมากยิ่งขึ้น ด้วยสาเหตุดังกล่าวประชาคมโลกจึงได้ให้ความสำคัญกับปัญหาและร่วมกันพิจารณาหาแนวทางในการแก้ไข โดยมีการจัดตั้งกรอบอนุสัญญาสหประชาชาติว่าด้วยการเปลี่ยนแปลงสภาพภูมิอากาศ ค.ศ. 1992 ขึ้น เพื่อรักษาระดับความเข้มข้นของก๊าซเรือนกระจกในชั้นบรรยากาศให้มีค่าคงที่และ อยู่ในระดับที่ไม่ก่อให้เกิดอันตรายต่อระบบภูมิอากาศของโลก รวมถึงเพื่อป้องกันและบรรเทาผลกระทบจากกิจกรรมต่างๆ ของมนุษย์ที่เป็นอันตรายต่อการเปลี่ยนแปลงสภาพภูมิอากาศ โดยแบ่งภาคีกรอบอนุสัญญาออกเป็น 2 กลุ่ม ได้แก่ กลุ่มประเทศภาคผนวกที่ 1 (Annex 1) ประกอบไปด้วยประเทศที่พัฒนาแล้ว และกลุ่มประเทศภาคผนวกที่ 2 (Annex 2) ประกอบไปด้วยประเทศกำลังพัฒนาจากการศึกษาพบว่า ประเทศในกลุ่มภาคผนวกที่ 1 (Annex 1) ซึ่งมีพันธกรณีในการดำเนินมาตรการที่สอดคล้องกับการบรรเทาการเปลี่ยนแปลงสภาพภูมิอากาศ ได้เริ่มมีมาตรการทางกฎหมายในการจัดซื้อจัดจ้างสินค้าและบริการที่เป็นมิตรต่อสิ่งแวดล้อม เพื่อเป็นการช่วยแก้ไขปัญหาการเปลี่ยนแปลงสภาพภูมิอากาศ สำหรับประเทศไทยในฐานะที่เป็นภาคีตามกรอบอนุสัญญาสหประชาชาติว่าด้วยการเปลี่ยนแปลงสภาพภูมิอากาศ ค.ศ. 1992 ซึ่งอยู่ในกลุ่มประเทศภาคผนวก ที่ 2 (Annex 2) ได้แสดงเจตจำนงในการลดก๊าซเรือนกระจกและให้ความร่วมมือกับประชาคมโลกเกี่ยวกับการป้องกันปัญหาการเปลี่ยนแปลงสภาพภูมิอากาศ จึงจำเป็นต้องศึกษาถึงกฎหมายที่เกี่ยวข้องเพื่อลดการดำเนินกิจกรรมที่ส่งผลกระทบต่อระบบสภาวะอากาศและระบบนิเวศวิทยานิพนธ์ฉบับนี้จึงมุ่งเน้นศึกษาถึงหลักการทางกฎหมายของต่างประเทศที่ใช้ส่งเสริมการจัดซื้อจัดจ้างสินค้าและบริการที่เป็นมิตรต่อสิ่งแวดล้อม ได้แก่ EU Procurement Directives 2014/24/EU ของ สหภาพยุโรป และ Act on Promotion of Procurement of Eco-Friendly Goods and Services by the State and Other Entities A.D. 2000 ของประเทศญี่ปุ่น เพื่อวิเคราะห์ถึงความสำคัญและความเหมาะสมในการนำหลักการทางกฎหมายเกี่ยวกับการจัดซื้อ จัดจ้างที่เป็นมิตรต่อสิ่งแวดล้อมมาใช้ในประเทศไทย โดยจะพิจารณาข้อดี ข้อเสีย ผลกระทบด้านต่างๆ ทั้งทางเศรษฐกิจ สังคม และสิ่งแวดล้อม เพื่อเป็นการพัฒนาระบบกฎหมายของประเทศไทยและลดปัญหาทางกฎหมายในการค้าระหว่างประเทศกับประเทศที่ออกมาตรการทางการค้า เพื่อคุ้มครองสิ่งแวดล้อมจากการศึกษาพบว่า ประเทศไทยยังไม่มีกฎหมายที่กำหนดในเรื่องการจัดซื้อจัดจ้างสินค้าและบริการที่เป็นมิตรต่อสิ่งแวดล้อมไว้โดยเฉพาะ เนื่องจากกฎหมายที่บังคับใช้ในปัจจุบัน ได้แก่ พระราชบัญญัติการจัดซื้อจัดจ้างและการบริหารพัสดุภาครัฐ พ.ศ.2560 ซึ่งไม่ได้มุ่งเน้นและครอบคลุมไปถึงการจัดซื้อจัดจ้างที่เป็นมิตรต่อสิ่งแวดล้อม จึงอาจส่งผลกระทบต่อทรัพยากรธรรมชาติ ความหลากหลายทางชีวภาพ และภาคอุตสาหกรรมของประเทศไทย ด้วยเหตุนี้เพื่อให้มีความเหมาะสมกับสถานการณ์ในปัจจุบัน จึงควรต้องมีการแก้ไขเพิ่มเติมกฎหมายที่เกี่ยวข้องเพื่อส่งเสริมและให้อำนาจแก่หน่วยงานที่ทำสัญญาของภาครัฐสามารถประเมินการจัดซื้อจัดจ้างสินค้าและบริการที่เป็นมิตรต่อสิ่งแวดล้อมได้
DOI: 10.6084/m9.figshare.14958822
title: Supplementary Material for: Efficacy and safety of Intravitreal Aflibercept Vs Verteporfin Photodynamic Therapy in a Caucasian Population with Polypoidal Choroidal Vasculopathy: A Randomized Clinical Trial.

description: Medicine
DOI: 10.15151/esrf-es-536302821
title: Molecular machines in energy transduction, cellular signaling and defense processes

description: Within this BAG we are focussing mainly on three topics: 1.) proteins that use the energy of light, ATP, GTP or NADH to perform essential biological functions, either embedded in the membrane or in the cytosol 2.) proteins of different essential signaling or metabolic processes in plants like the ethylene pathway or the nitrogen metabolism 3.) proteins involved in the immune system of prokaryotic bacteria and plants or associated with diseases like cancer or developmental disorders
DOI: 10.15151/esrf-es-541050152
title: Berlin-Karlsruhe - Macromolecular Crystallography BAG - Structural Biology of light responsive, signal transducing and metalloproteins

description: We study structure-function relationships in several groups of proteins, of which many are involved in signal transduction or energy conversion. In our work on biocatalytic splitting of molecular hydrogen into protons and electrons, we analyse in particular the membrane bound [NiFe]hydrogenase, a protein of the remarkable small subgroup of hydrogenases which is active under aerobic conditions. We study the signaling mechanisms of phytochromes by focusing on the structures of photocycle intermediates and analysing domain movements. We analyse the structures of various G-protein coupled receptors (GPCRs; e.g. melanocortin-4 receptor, Ghrelin receptor), either alone or in complex with their cognate G-proteins or selected effector proteins (arrestins), to understand their signaling mechanisms. Other areas of our research include various microbial rhodopsins, cytomegalovirus proteins and their complexes, and DNA photolyases, in particular bacterial (6-4) photolyases.
DOI: 10.15151/esrf-es-541097790
title: BAG for the Structural Biology Groups in Madrid

description: This proposal is a collaborative effort of the Structural Biology Groups of Madrid with the objective to form a strong core of scientist devoted to this area of research in Spain. It is composed of 18 groups distributed in 4 Institutes.
DOI: 10.15151/esrf-es-541419231
title: The Netherlands BAG
DOI: 10.15151/esrf-es-542557577
title: ITABAG: 3D structures of macromolecules related to human health

description: The ITABAG includes structural biologists from Universities, National Research Council and Hospital research centres in Italy. The laboratories apply various diffraction methods to study the structure-function relationships in various macromolecules. A unifying factor for the vast majority of the macromolecules under study is that they are related to human health, either directly, being human proteins involved in some disease, or indirectly, as proteins expressed by human pathogens and validated as potential pharmacological targets. Other projects investigate basic chemical processes, such as crystal growth and polymer association and formation of nanostructures.
DOI: 10.15151/esrf-es-625885128
title: CryoEM of bacterial conjugation proteins

description: This proposal looks at protein involved in bacterial conjugation.