cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xpgne8
title: Occurrence Download

description: A dataset containing 302458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Upupa epops",
 "Year 2000-2025"
 ]
}

 The dataset includes 302458 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047791-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/djf5fxvftw
title: The agents of Paenibacillus polymyxa enhance maize resistance to Fusarium stalk rot by regulating endophytic bacteria and soil microbial communities

description: Collect and mix PCR products of identical components. Recover target bands through 2% agarose gel electrophoresis and purify using the AxyPrep DNA Gel Extraction Kit (Axygen Biosciences, Union City, CA, USA). Verify purified products via 2% agarose gel electrophoresis and quantify using a Quantus™ Fluorometer (Promega, USA). Construct libraries with the NEXTflex™ Rapid DNA-Seq Kit (Bioo Scientific, USA), including: (1) adapter ligation; (2) removal of self-ligated adapters using magnetic beads; (3) PCR amplification for template enrichment; (4) magnetic bead purification of PCR products to obtain final libraries. Perform paired-end sequencing on the Illumina MiSeq PE300 platform (Illumina Inc., USA; Shanghai Majorbio Bio-pharm Technology Co., Ltd.).
Control raw sequencing data quality with fastp (v0.20.0). Assemble sequences using FLASH (v1.2.7). Cluster OTUs at 97% similarity and remove chimeras using UPARSE (v7.1). Annotate taxonomic classifications with the RDP Classifier (v2.2) against the SILVA 16S rRNA database (v138) at 70% confidence threshold. Input microbiome data as matrices and calculate Alpha diversity indices for bacterial and fungal communities at the OTU level. Analyze differential species across treatments using Venn diagrams to identify core OTUs. Measure Beta diversity variations between groups via Unifrac (weighted/unweighted, sorted by distance metrics appropriate for this study) and Bray-Curtis distances, testing for significant differences. Validate group separation significance through Partial Least Squares Discriminant Analysis (PLS-DA). Perform multi-group comparisons of intergroup species differences using the Kruskal-Wallis rank-sum test. Analyze correlations among environmental factors, samples, and microbiota using RDA/CCA methods. Construct co-occurrence networks to examine evolutionary relationships between species. Predict bacterial and fungal functions using FAPROTAX and PICRUSt2, respectively. Conduct all analyses on the Majorbio I-Sanger Cloud Platform (www.i-sanger.com).
According to the above operation, the relationship between the number of otu and the species of each sample was obtained, and these relationships were analyzed and predicted.
DOI: 10.3535/2kq-ybv-v9s
title: Sorbus aucuparia subsp. aucuparia

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/lat-7v4-rlq
title: Salicornia europaea (Moss) Lambinon & Vanderp.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.17632/djf5fxvftw.1
title: The agents of Paenibacillus polymyxa enhance maize resistance to Fusarium stalk rot by regulating endophytic bacteria and soil microbial communities

description: Collect and mix PCR products of identical components. Recover target bands through 2% agarose gel electrophoresis and purify using the AxyPrep DNA Gel Extraction Kit (Axygen Biosciences, Union City, CA, USA). Verify purified products via 2% agarose gel electrophoresis and quantify using a Quantus™ Fluorometer (Promega, USA). Construct libraries with the NEXTflex™ Rapid DNA-Seq Kit (Bioo Scientific, USA), including: (1) adapter ligation; (2) removal of self-ligated adapters using magnetic beads; (3) PCR amplification for template enrichment; (4) magnetic bead purification of PCR products to obtain final libraries. Perform paired-end sequencing on the Illumina MiSeq PE300 platform (Illumina Inc., USA; Shanghai Majorbio Bio-pharm Technology Co., Ltd.).
Control raw sequencing data quality with fastp (v0.20.0). Assemble sequences using FLASH (v1.2.7). Cluster OTUs at 97% similarity and remove chimeras using UPARSE (v7.1). Annotate taxonomic classifications with the RDP Classifier (v2.2) against the SILVA 16S rRNA database (v138) at 70% confidence threshold. Input microbiome data as matrices and calculate Alpha diversity indices for bacterial and fungal communities at the OTU level. Analyze differential species across treatments using Venn diagrams to identify core OTUs. Measure Beta diversity variations between groups via Unifrac (weighted/unweighted, sorted by distance metrics appropriate for this study) and Bray-Curtis distances, testing for significant differences. Validate group separation significance through Partial Least Squares Discriminant Analysis (PLS-DA). Perform multi-group comparisons of intergroup species differences using the Kruskal-Wallis rank-sum test. Analyze correlations among environmental factors, samples, and microbiota using RDA/CCA methods. Construct co-occurrence networks to examine evolutionary relationships between species. Predict bacterial and fungal functions using FAPROTAX and PICRUSt2, respectively. Conduct all analyses on the Majorbio I-Sanger Cloud Platform (www.i-sanger.com).
According to the above operation, the relationship between the number of otu and the species of each sample was obtained, and these relationships were analyzed and predicted.
DOI: 10.3535/kny-6ht-r9b
title: Aria edulis (Willd.) M. Roem.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/z6g-xze-lr4
title: Salicornia europaea (Moss) Lambinon & Vanderp.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/p87-dk8-ad8
title: Sagina saginoides subsp. saginoides

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/tnw-7pd-h6h
title: Centaurea timbalii Martrin-Donos

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/10m-yy4-wgk
title: Juncus conglomeratus L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/cba-d1k-nsy
title: Aria graeca (Lodd. ex Spach) M. Roem.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/087-fgg-mpa
title: Sibbaldia procumbens L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/r9k-rbl-vr9
title: Aria graeca (Lodd. ex Spach) M. Roem.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/cc3x6ls
title: CCDC 116485: Experimental Crystal Structure Determination

description: Related Article: I.V.Tselinsky, S.F.Melnikova, S.V.Pirogov, S.D.Shaposhnikov, C.Nather, T.Traulsen, W.Friedrichsen|2000|Heterocyclic Communications|6|35|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/8nr-r9v-tl2
title: Hedlundia hohenesteri (N. Mey.) Sennikov & Kurtto

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/re5-shb-g7x
title: Karpatiosorbus franconica (Bornm. ex Düll) Sennikov & Kurtto

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/cc4lmq1
title: CCDC 137073: Experimental Crystal Structure Determination

description: Related Article: K.C.Kumara Swamy, S.Kumaraswamy, M.A.Said, R.S.K.Kishore, R.Herbst-Irmer, M.Pulm|2000|Curr.Sci.|78|473|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/rj6-bsp-s6k
title: Petasites paradoxus (Retz.) Baumg.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/598-bkh-2hr
title: Hedlundia pulchra (N. Mey.) Sennikov & Kurtto

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/hd6-80v-yh3
title: Phyteuma ovatum Honck.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.17632/jftzw9bs9j
title: AI-driven discovery and engineering of human endogenous nanocage proteins for mRNA delivery

description: Source data for "AI-driven discovery and engineering of human endogenous nanocage proteins for mRNA delivery"
DOI: 10.3535/5zf-fh2-mhz
title: Leontodon hispidus subsp. hispidus

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/lx3-av9-6g4
title: Hedlundia pseudothuringiaca (Düll) Sennikov & Kurtto

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/cc4pk9n
title: CCDC 139881: Experimental Crystal Structure Determination

description: Related Article: M.Koman, J.Moncol, D.Hudecova, B.Dudova, M.Melnik, M.Korabik, J.Mrozinski|2001|Pol.J.Chem.|75|957|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc55rfh
title: CCDC 154486: Experimental Crystal Structure Determination

description: Related Article: Bubin Xu, Yongge Wei, C.L.Barnes, Zhonghua Peng|2001|Angew.Chem.,Int.Ed.|40|2290|doi:10.1002/1521-3773(20010618)40:12<2290::AID-ANIE2290>3.0.CO;2-P
description: Related Article: Bubin Xu, Meng Lu, Yongge Wei, C.Fung-Chi Cheung, Yongchun Pan, Zhonghua Peng|2001|PMSE Preprints|85|532|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/t1m-ye0-359
title: Hedlundia gauckleri (N. Mey.) Sennikov & Kurtto

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/cc5dm6c
title: CCDC 161082: Experimental Crystal Structure Determination

description: Related Article: J.Szczygelska-Tao, V.Ch.Kravtsov, J.F.Biernat|2001|Pol.J.Chem.|75|991|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5lvq9
title: CCDC 167081: Experimental Crystal Structure Determination

description: Related Article: C.Zucca, P.Bravo, E.Corradi, S.V.Meille, A.Volonterio, M.Zanda|2001|Molecules|6|424|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/jftzw9bs9j.1
title: AI-driven discovery and engineering of human endogenous nanocage proteins for mRNA delivery

description: Source data for "AI-driven discovery and engineering of human endogenous nanocage proteins for mRNA delivery"
DOI: 10.3535/h1g-cd2-z0w
title: Silene acaulis subsp. acaulis

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/qtq-qbc-jyz
title: Karpatiosorbus schnizleiniana (N. Mey.) Sennikov & Kurtto

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/cc4vn8w
title: CCDC 144778: Experimental Crystal Structure Determination

description: Related Article: J.Szklarzewicz, D.Matoga, A.Samotus, J.Burgess, J.Fawcett, D.R.Russell|2001|Croat.Chem.Acta|74|529|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5gp7j
title: CCDC 163067: Experimental Crystal Structure Determination

description: Related Article: M.Oresic, D.Filic, B.Prugovecki, M.Vinkovic, M.Dumic|2001|Croat.Chem.Acta|74|667|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/f00-jgw-m56
title: Chenopodiastrum hybridum (L.) S. Fuentes, Uotila & Borsch

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/gt8-znf-hzb
title: Salicornia europaea (Moss) Lambinon & Vanderp.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/cc5gp8k
title: CCDC 163068: Experimental Crystal Structure Determination

description: Related Article: M.Oresic, D.Filic, B.Prugovecki, M.Vinkovic, M.Dumic|2001|Croat.Chem.Acta|74|667|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5gpdp
title: CCDC 163072: Experimental Crystal Structure Determination

description: Related Article: M.Oresic, D.Filic, B.Prugovecki, M.Vinkovic, M.Dumic|2001|Croat.Chem.Acta|74|667|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/7z7-rvz-m32
title: Oxybasis glauca (L.) S. Fuentes, Uotila & Borsch

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/d47-6dw-kzs
title: Erigeron sumatrensis Retz.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/cc5gpbm
title: CCDC 163070: Experimental Crystal Structure Determination

description: Related Article: M.Oresic, D.Filic, B.Prugovecki, M.Vinkovic, M.Dumic|2001|Croat.Chem.Acta|74|667|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5gpcn
title: CCDC 163071: Experimental Crystal Structure Determination

description: Related Article: M.Oresic, D.Filic, B.Prugovecki, M.Vinkovic, M.Dumic|2001|Croat.Chem.Acta|74|667|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/ksp-x53-erz
title: Polycnemum majus A. Braun

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/cc5c16r
title: CCDC 159563: Experimental Crystal Structure Determination

description: Related Article: M.Majeric-Elenkov, D.Ziher, A.Visnjevac, Z.Hamersak, B.Kojic-Prodic, V.Sunjic|2001|Croat.Chem.Acta|74|707|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13145/bacdive131603.20241212.9.2
title: Aeromicrobium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.j7h6xs
title: Occurrence Download

description: A dataset containing 62138474 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2024-2025"
 ]
}

 The dataset includes 62138474 records from 891 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010311-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive131604.20241212.9.2
title: Aeromicrobium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.cffec5
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "GadmGid is DEU.3_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Caloplaca citrina (Hoffm.) Th.Fr."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010358-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kje3v2
title: Occurrence Download

description: A dataset containing 2420500 records in GBIF matching the query:
SELECT "year", GBIF_EEARGCode( 1000, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000) ) AS eeaCellCode, classKey, class, COUNT(*) AS occurrences, MIN(COALESCE(coordinateUncertaintyInMeters, 1000)) AS minCoordinateUncertaintyInMeters, MIN(GBIF_TemporalUncertainty(eventDate, null)) AS minTemporalUncertainty FROM occurrence WHERE occurrenceStatus = 'PRESENT' AND countrycode = 'BE' AND "year" &gt;= 1900 AND hasCoordinate = TRUE AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND (LOWER(identificationVerificationStatus) NOT IN ( 'unverified', 'unvalidated', 'not validated', 'under validation', 'not able to validate', 'control could not be conclusive due to insufficient knowledge', 'uncertain', 'unconfirmed', 'unconfirmed - not reviewed', 'validation requested' ) OR identificationVerificationStatus IS NULL)AND classKey IN (126, 131, 137, 139, 148, 151, 179, 183, 186, 194, 196, 199, 203, 205, 206, 212, 216, 220, 225, 229, 232, 244, 245, 252, 255, 256, 270, 281, 282, 307, 327, 328, 354, 356, 359, 360, 361, 365, 367, 7073593, 7228684, 7742773, 7774442, 7947184, 8179345, 9273948, 10689325, 11133537, 11418114, 11493978, 11545536, 11592253)AND COALESCE(coordinateUncertaintyInMeters, 1000) &lt;= 10000GROUP BY "year", eeaCellCode, classKey, class ORDER BY "year" DESC, eeaCellCode ASC, classKey ASC;

 The dataset's 2420500 records were derived from 664 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010329-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbn7ku
title: Occurrence Download

description: A dataset containing 18256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Dryophytes squirellus (Daudin, 1800))"
 ]
}

 The dataset includes 18256 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017737-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zve268
title: Occurrence Download

description: A dataset containing 64333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phillyrea angustifolia L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 64333 records from 383 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017728-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvkycu
title: Occurrence Download

description: A dataset containing 21836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)"
 ]
}

 The dataset includes 21836 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008729-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6gypr
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Musculus taylori (Dall, 1897)"
 ]
}

 The dataset includes 16 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107482-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.