cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1f8p5d6
title: Phylogenetics of Pinus subsection Cembroides Engelm. (Pinaceae) inferred from low-copy nuclear genesequences

description: Pinus subsection Cembroides comprises approximately 15 taxa distributed
 from the southwestern United States to south central Mexico. Despite
 previous phylogenetic studies based on morphology, nuclear ribosomal DNA,
 and plastid DNA, we still lack a robust phylogenetic hypothesis and clear
 delimitation for the closely-related species within the group. We studied
 the evolutionary relationships within subsection Cembroides and explored
 incomplete lineage sorting and reticulation using low-copy number nuclear
 genes. Concatenation and multispecies coalescent phylogenies were inferred
 from samples representing all taxa from subsection Cembroides and
 outgroups corresponding to the closely-related subsections Balfourianae,
 Nelsoniae, Gerardianae, and Krempfianae. The concatenation and
 coalescence-based trees mainly agreed with one another in recovering Pinus
 subsection Cembroides as monophyletic and in recovering similar
 relationships among species as in previous plastid DNA-based studies.
 Phylogenetic position and admixture analysis suggest that P. californiarum
 should be treated as a separate species from P. monophylla. Furthermore,
 our results support recognizing P. fallax as a species rather than as an
 infraspecific taxon of P. monophylla or P. edulis. The ASTRAL-III tree was
 consistent with the presence of very high level of ILS in the group of
 pinyon pines with small cones. Analyses that account for both incomplete
 lineage sorting and reticulation identify some unexpected hybridization
 scenarios that were not reported in the literature.
description: Cembroides_genes_t60_n304The alignment of 60 taxa and 304 concatenated nuclear genes was 222,129 bp in length. The alignment contains the relative closed of the Cembroides subsection. The alignment includes sequences of Parrya and Quinquefoliae sections. Only one sample, Pinus monophylla UT1 (DSG478), was identified as having an unstable position with RogueNaRok (dropset size 3.0). We did not include it in this alignment.
DOI: 10.5061/dryad.gg63086
title: Data from: A curious new species of Xenostegia (Convolvulaceae) from Central Africa, with remarks on the phylogeny of the genus

description: The polymorphic genus Merremia Dennst. ex Endl. has been shown to be
 polyphyletic. In 1980, Xenostegia D.F.Austin & Staples was
 separated from the first, based on its longitudinally dehiscing anthers,
 stigmas with long tapering papillae, and non-spiny, pantoporate pollen,
 and accommodated two species in the Old World tropics. A recent molecular
 study and subsequent review of the tribe Merremieae resulted in the
 distinction of seven genera and corroborated the delimitation of
 Xenostegia at genus level, with three more species added to it. During
 fieldwork carried out in 2015 and 2016 in the Lomami National Park,
 Democratic Republic of the Congo, material was collected of a
 Convolvulaceae species with pinnatifid leaves that was morphologically
 very close to Xenostegia sapinii, but deviated notably in sepal shape and
 corolla length. Closer examination revealed additional distinctive
 characters leading to the conclusion that it represents a distinct taxon
 new to science. Its pantoporate pollen, longitudinally dehiscing anthers
 and stigmas with long papillae seems to confine its placement in
 Xenostegia. However, its most striking feature is the presence of two free
 styles, a character otherwise not present in the subfamily
 Convolvuloideae. The results of our molecular phylogenetic analyses
 confirmed our hypothesis on our new taxon being a member of Xenostegia.
 The observed incongruence between the nuclear and plastid-based trees,
 might indicate the new taxon has a hybrid origin. Based on all evidence,
 it is recognized at species level, Xenostegia lomamiensis, and is formally
 published, along with a full morphological description, illustration,
 habitat data, and an IUCN Red List assessment. A key to the species of
 Xenostegia in central Africa is provided.
description: Sosef et al. 2018,
 Xenostegia_species_DRCongo_map_dataMap data related to
 herbarium specimens
DOI: 10.5061/dryad.1hn74p5
title: Data from: Species delimitation and phylogeny of Epithelantha (Cactaceae)

description: The genus Epithelantha (Cactaceae, Cactoideae, Cacteae) is native to
 Mexico and the southern USA and includes several uncertain species and
 ambiguous phylogenetic relationships. We applied multivariate analysis to
 a set of nine quantitative characters and six qualitative characters and
 we used Bayesian inference and maximum likelihood to reconstruct the
 phylogeny of Epithelantha using molecular data from four chloroplast
 regions (petL-psbE, psbA-trnH, trnL-F, and trnQ-rps16). Eleven taxa were
 collected in 39 localities where digital images of five individuals were
 taken. A correlation analysis allowed us to eliminate correlated
 characters. A discriminant canonical analysis (DCA) for quantitative
 characters and principal components analyses with mixed data (PCA mix) for
 quantitative and qualitative characters, identified the length of the
 flower, number of spines, areole length/width ratio, the expansion of the
 hilar region of the seed, multicellular sculpture and the relief of the
 periclinal wall as the most variable characters. The partial least
 squares-discriminant analysis (PLS-DA) allowed us to recognize nine of
 eleven taxa. As a complement, the molecular data matrix included 68
 substitutions and 12 indels between the four markers. The 39 terminals
 analyzed were recovered in nine strongly supported clades, confirming the
 results of multivariate analyses. Epithelantha was recovered as a
 monophyletic group strongly supported by four substitutions and an indel,
 with Turbinicarpus being the sister group. Based on our results, we
 include a taxonomic synthesis of Epithelantha where we recognize ten
 species, propose two new combinations, designate seven lectotypes, and
 provide a key for species.
description: COMB-EpithelanthaCombined data matrix (DNA, Indels and morphology) that includes the script to analyze in Mrbayes. The markers used are petL-psbE, psbA-trnH, trnL-F and trnQ-rps16DNA-EpithelanthaMolecular data matrix (DNA and Indels) that includes the script to analyze in Mrbayes. The markers used are petL-psbE, psbA-trnH, trnL-F and trnQ-rps16
DOI: 10.15468/dl.s5rh7k
title: Occurrence Download

description: A dataset containing 3578857 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Country is one of (United States of America, Canada, Mexico, Belize, Guatemala, El Salvador, Honduras, Nicaragua, Costa Rica, Panama)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 3578857 records from 1057 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001845-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46nvhr
title: Occurrence Download

description: A dataset containing 258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cymbidium goeringii"
 ]
}

 The dataset includes 258 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024761-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5gcgb
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phalloceros spiloura)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 30 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024760-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28355675
title: Dataset: Silicon fertilization suppresses black cutworm performance and enhances nematode induced cutworm mortality

description: We examined the impacts of silicon fertilization of creeping bentgrass (<i>Agrostis stolonifera</i>), a widely cultivated turfgrass, on black cutworm performance, larval susceptibility to the entomopathogenic nematode <i>Steinernema carpocapsae</i>, and nematode reproduction.
DOI: 10.6084/m9.figshare.28355675.v1
title: Dataset: Silicon fertilization suppresses black cutworm performance and enhances nematode induced cutworm mortality

description: We examined the impacts of silicon fertilization of creeping bentgrass (<i>Agrostis stolonifera</i>), a widely cultivated turfgrass, on black cutworm performance, larval susceptibility to the entomopathogenic nematode <i>Steinernema carpocapsae</i>, and nematode reproduction.
DOI: 10.15468/dl.pusb8t
title: Occurrence Download

description: A dataset containing 93023 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bambusicola sonorivox",
 "Country is Chinese Taipei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 93023 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049439-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nu7zx4
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mylochromis formosus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049481-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29203994
title: SeedGermination.csv

description: these data look at the germination of seeds
DOI: 10.6084/m9.figshare.29203994.v1
title: SeedGermination.csv

description: these data look at the germination of seeds
DOI: 10.15468/dl.77krct
title: Occurrence Download

description: A dataset containing 293596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.29_1",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 293596 records from 582 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006844-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5byzna
title: Occurrence Download

description: A dataset containing 2786 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Museu Paraense Emílio Goeldi - Opiliones Collection",
 "Country is one of (Argentina, Bolivia (Plurinational State of), Brazil, Colombia, French Guiana, Guyana, Paraguay, Peru, Suriname, Uruguay, Venezuela (Bolivarian Republic of), Ecuador, Chile)"
 ]
}

 The dataset includes 2786 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006877-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kju4j8
title: Occurrence Download

description: A dataset containing 1291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apiastrum angustifolium",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1291 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006880-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4u5dc
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((88.60124 24.825368, 88.523872 24.819791, 88.44843 24.803199, 88.376788 24.776003, 88.310726 24.738882, 88.251879 24.692756, 88.2017 24.638771, 88.161419 24.578265, 88.13202 24.512736, 88.11421199999999 24.443803, 88.10841600000001 24.373169, 88.11475299999999 24.302573, 88.133049 24.233752, 88.162834 24.168397, 88.203363 24.108111, 88.253629 24.054369, 88.31238999999999 24.008487, 88.378203 23.971585, 88.44945800000001 23.944564, 88.524413 23.928084, 88.60124 23.922545, 88.678067 23.928084, 88.753022 23.944564, 88.824277 23.971585, 88.89009 24.008487, 88.948851 24.054369, 88.999117 24.108111, 89.039646 24.168397, 89.06943099999999 24.233752, 89.087727 24.302573, 89.094064 24.373169, 89.088268 24.443803, 89.07046 24.512736, 89.041061 24.578265, 89.00078000000001 24.638771, 88.95060100000001 24.692756, 88.89175400000001 24.738882, 88.825692 24.776003, 88.75405000000001 24.803199, 88.678608 24.819791, 88.60124 24.825368))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006878-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34894/p6gvxo
title: Replication Data for: Reactions to Social Videos in Long-tailed Macaques

description: Data and analysis scripts related to the manuscript "Reactions to Social Videos in Long-tailed Macaques" (accepted in Animal Cognition).
description: Updated author data and added link to publication
DOI: 10.15468/dl.48e2y6
title: Occurrence Download

description: A dataset containing 599 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-13.22919 29.92602,78.12039 29.92602,78.12039 61.88929,-13.22919 61.88929,-13.22919 29.92602))",
 "TaxonKey is Quercus lusitanica"
 ]
}

 The dataset includes 599 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006881-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31134949
title: ImageJ summary

description: Results of imageJ analysis
DOI: 10.6084/m9.figshare.31134949.v1
title: ImageJ summary

description: Results of imageJ analysis
DOI: 10.3535/ct7-g25-cw0
title: Nassarius dekkeri H. H. Kool, 2001

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jre-b4r-jzh
title: Desmaulus extinctorium (Lamarck, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zq3-g7l-re8
title: Conus glaucus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4lr-c75-tcc
title: Albinaria maculosa (Deshayes, 1835)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/25d-g9s-9ft
title: Lepidochitona furtiva (Monterosato, 1879)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.aenk8s
title: Occurrence Download

description: A dataset containing 2865 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-11.08178 34.08138,42.96205 34.08138,42.96205 72.94343,-11.08178 72.94343,-11.08178 34.08138))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bimastos rubidus"
 ]
}

 The dataset includes 2865 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006882-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29995942
title: Source Data (PI3K/Akt-Caveolin-1 Crosstalk in Calcium Homeostasis Underlies the Integrated Cardioprotection by Ginseng-Safflower Compatibility).xlsx

description: This dataset contains source data supporting the study “PI3K/Akt-Caveolin-1 Crosstalk in Calcium Homeostasis Underlies the Integrated Cardioprotection by Ginseng-Safflower Compatibility” It includes raw and processed data from primary cardiomyocytes and a rat myocardial ischemia model, examining calcium signaling and metabolic regulation by ginseng, safflower, and their combination. Mechanistic validation was performed using PP2, LY294002, and Caveolin-1 knockdown (adenoviral in vitro and AAV9-mediated cardiomyocyte-specific in vivo). Data encompass electrophysiology, cardiac functional measurements, and untargeted metabolomics.
DOI: 10.6084/m9.figshare.29995942.v2
title: Source Data (PI3K/Akt-Caveolin-1 Crosstalk in Calcium Homeostasis Underlies the Integrated Cardioprotection by Ginseng-Safflower Compatibility).xlsx

description: This dataset contains source data supporting the study “PI3K/Akt-Caveolin-1 Crosstalk in Calcium Homeostasis Underlies the Integrated Cardioprotection by Ginseng-Safflower Compatibility” It includes raw and processed data from primary cardiomyocytes and a rat myocardial ischemia model, examining calcium signaling and metabolic regulation by ginseng, safflower, and their combination. Mechanistic validation was performed using PP2, LY294002, and Caveolin-1 knockdown (adenoviral in vitro and AAV9-mediated cardiomyocyte-specific in vivo). Data encompass electrophysiology, cardiac functional measurements, and untargeted metabolomics.
DOI: 10.6084/m9.figshare.29995942.v1
title: Source Data (PI3K/Akt-Caveolin-1 Crosstalk in Calcium Homeostasis Underlies the Integrated Cardioprotection by Ginseng-Safflower Compatibility).xlsx

description: This dataset contains source data supporting the study “PI3K/Akt-Caveolin-1 Crosstalk in Calcium Homeostasis Underlies the Integrated Cardioprotection by Ginseng-Safflower Compatibility” It includes raw and processed data from primary cardiomyocytes and a rat myocardial ischemia model, examining calcium signaling and metabolic regulation by ginseng, safflower, and their combination. Mechanistic validation was performed using PP2, LY294002, and Caveolin-1 knockdown (adenoviral in vitro and AAV9-mediated cardiomyocyte-specific in vivo). Data encompass electrophysiology, cardiac functional measurements, and untargeted metabolomics.
DOI: 10.6084/m9.figshare.31134970
title: GPR3 in neuro-metabolic-immune-reproductive nexus – a potential therapeutic target for Multi-System diseases

description: GPR3(G-protein-coupled receptor 3), an orphan G-protein-coupled receptor (GPCR) with constitutive Gs activity, is expressed in the brain, liver, ovary, and other tissues, regulating cell proliferation, differentiation, and apoptosis across the nervous, reproductive, immune, and metabolic systems. This review synthesizes evidence on its integrated signaling and physiological functions to address the lack of a comprehensive multisystem pathophysiology overview. A systematic literature search was conducted on PubMed and Web of Science, using keywords such as “GPR3”, “GPCR”, “neurodegeneration”, “metabolism”, “immune”, “reproduction”, “agonist”, “inhibitor”, and “therapeutic target”. This search identified GPR3′s roles in neurodegenerative diseases, immune inflammation, reproduction, and energy metabolism. The analysis focused on signaling pathways, ligand regulation, and therapeutic potential. The research indicates that GPR3 is involved in neuronal survival, synaptic plasticity, and microglial activity <i>via</i> the cAMP/PKA, PI3K/Akt, and β - arrestin pathways. It promotes amyloid - β formation in Alzheimer’s disease (AD), yet provides neuroprotection in Parkinson’s disease (PD) models. It may contribute to anxiety/depression - like states, maintain oocyte meiotic arrest in the ovary, and activate thermogenic genes in adipose tissue. GPR3 modulates immune responses. Using oleic acid (OA) and diphenyleneiodonium (DPI) as activators, and AF64394 and cannabidiol (CBD) as antagonists, it shows potential in disease models. GPR3 acts as a central molecular hub integrating neural, metabolic, immune, and reproductive signaling, highlighting its potential as a therapeutic target for chronic multisystem disorders. However, its dual roles in certain pathologies and translation challenges necessitate further research.
DOI: 10.6084/m9.figshare.31134970.v1
title: GPR3 in neuro-metabolic-immune-reproductive nexus – a potential therapeutic target for Multi-System diseases

description: GPR3(G-protein-coupled receptor 3), an orphan G-protein-coupled receptor (GPCR) with constitutive Gs activity, is expressed in the brain, liver, ovary, and other tissues, regulating cell proliferation, differentiation, and apoptosis across the nervous, reproductive, immune, and metabolic systems. This review synthesizes evidence on its integrated signaling and physiological functions to address the lack of a comprehensive multisystem pathophysiology overview. A systematic literature search was conducted on PubMed and Web of Science, using keywords such as “GPR3”, “GPCR”, “neurodegeneration”, “metabolism”, “immune”, “reproduction”, “agonist”, “inhibitor”, and “therapeutic target”. This search identified GPR3′s roles in neurodegenerative diseases, immune inflammation, reproduction, and energy metabolism. The analysis focused on signaling pathways, ligand regulation, and therapeutic potential. The research indicates that GPR3 is involved in neuronal survival, synaptic plasticity, and microglial activity <i>via</i> the cAMP/PKA, PI3K/Akt, and β - arrestin pathways. It promotes amyloid - β formation in Alzheimer’s disease (AD), yet provides neuroprotection in Parkinson’s disease (PD) models. It may contribute to anxiety/depression - like states, maintain oocyte meiotic arrest in the ovary, and activate thermogenic genes in adipose tissue. GPR3 modulates immune responses. Using oleic acid (OA) and diphenyleneiodonium (DPI) as activators, and AF64394 and cannabidiol (CBD) as antagonists, it shows potential in disease models. GPR3 acts as a central molecular hub integrating neural, metabolic, immune, and reproductive signaling, highlighting its potential as a therapeutic target for chronic multisystem disorders. However, its dual roles in certain pathologies and translation challenges necessitate further research.