cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11636232.v1
title: MOESM6 of Enteric infection induces Lark-mediated intron retention at the 5′ end of Drosophila genes

description: Additional file 6. Lengths of transcripts and effective lengths of genes. Sheet1. Lengths of transcripts and features from reference annotation. Sheet2. transcript lengths by DGRP line (taking indels into account). Sheet3. CDS lengths by DGRP line (taking indels into account). Sheet 4. 5’UTR lengths by DGRP line (taking indels into account). Sheet5. 3’UTR lengths by DGRP line (taking indels into account). Sheet6. Gene effective length by transcript (taking indels and isoform ratios into account). Sheet7. Gene effective length by 5’UTR lengths (taking indels and isoform ratios into account). Sheet8. Gene effective length by 3’UTR lengths (taking indels and isoform ratios into account).
DOI: 10.6084/m9.figshare.11886573.v1
title: Data From: Three-Dimensional Visualization as a Tool for Interpreting Locomotion Strategies in Ophiuroids from the Devonian Hunsrück Slate

description: Micro-CT scans (.zip) and Autodesk Maya models (.mb) of six Paleozoic ophiuroid specimens: Encrinaster roemeri (Hubo 116), Euzonosoma tischbeinianum (EGR 27), Loriolaster mirabilis (Esch 596), Cheiropteraster giganteus (Hubo 119), Furcaster palaeozoicus (Okl 96), and Ophiurina lymani (HS 705) from the Lower Devonian Hunsrück Slate.
DOI: 10.6084/m9.figshare.16435581.v1
title: List of CAZy annotations in Genomes from Earth’s Microbiomes

description: List of all annotated CAZymes in MAGs from global study Genomes from Earth’s Microbiomes.<br>
DOI: 10.6084/m9.figshare.22687702.v1
title: Genome annotation and proteins supported by external evidence

description: Genome annotation and proteins filtered for external evidence
DOI: 10.6084/m9.figshare.25013861.v1
title: List of references from which archaeobotanical and palynological analyses are available

description: The reference list includes the entire reference literature of the database.
DOI: 10.6084/m9.figshare.27930891.v4
title: Datafile 1. Specie of interest

description: Specie of interest Microalgae
DOI: 10.6084/m9.figshare.28806131.v1
title: Appendix.docx

description: The dataset contains information on US-Russia interactions in Syria, analyzed as part of a research article titled "Great Power Dynamics in Conflict Environments: Exploring US-Russian Interactions in Syria."
DOI: 10.17632/gzp7rh25g7
title: L-M Compilation of Employment Data for FIGARO 2022 Database

description: We have compiled employment data in thousands of persons for the FIGARO 2022 data provided by Eurostat. They are compiled for 46 countries (including the rest of the world, RoW) and 64 industries, and cover the years 2010 to 2020. The final table has 2944 rows corresponding to 46x64 country-industry pairs and 11 columns, one column for each year from 2010 to 2020.
DOI: 10.6084/m9.figshare.1141960.v1
title: Uso de MDRD-IDMS y CKD-EPI para estimar la velocidad de filtración glomerular y prevalencia de enfermedad renal crónica en población adulta en Chile.

description: Estudio poblacion adulta que compara el efecto de utilizar la formula MDRD-IDMS y CKD-EPI para estimar la velocidad de filtarcion glomerular. Trabajo presentado en el Congreso de Nefrologia e Hipertensión de Chile 2013.
DOI: 10.6084/m9.figshare.16818448.v1
title: Supplementary Material for: Application of Restriction Site-Associated DNA Sequencing (RAD-Seq) for Copy Number Variation and Triploidy Detection in Human

description: At present, low-pass whole-genome sequencing (WGS) is frequently used in clinical research and in the screening of copy number variations (CNVs). However, there are still some challenges in the detection of triploids. Restriction site-associated DNA sequencing (RAD-Seq) technology is a reduced-representation genome sequencing technology developed based on next-generation sequencing. Here, we verified whether RAD-Seq could be employed to detect CNVs and triploids. In this study, genomic DNA of 11 samples was extracted employing a routine method and used to build libraries. Five cell lines of known karyotypes and 6 triploid abortion tissue samples were included for RAD-Seq testing. The triploid samples were confirmed by STR analysis and also tested by low-pass WGS. The accuracy and efficiency of detecting CNVs and triploids by RAD-Seq were then assessed, compared with low-pass WGS. In our results, RAD-Seq detected 11 out of 11 (100%) chromosomal abnormalities, including 4 deletions and 1 aneuploidy in the purchased cell lines and all triploid samples. By contrast, these triploids were missed by low-pass WGS. Furthermore, RAD-Seq showed a higher resolution and more accurate allele frequency in the detection of triploids than low-pass WGS. Our study shows that, compared with low-pass WGS, RAD-Seq has relatively higher accuracy in CNV detection at a similar cost and is capable of identifying triploids. Therefore, the application of this technique in medical genetics has a significant potential value.
DOI: 10.6084/m9.figshare.21365598.v1
title: Electrophysiology and two-photon imaging data from an olfactory Pavlovian conditioning task

description: Data from our manuscript on neural coding of olfactory Pavlovian conditioning in prefrontal cortex, olfactory cortex, motor cortex, and striatum. Includes both 2-photon imaging in prelimbic area and Neuropixels electrophysiology recordings across all regions in headfixed mice. The referenced github repository has information and code for analyzing the data.
DOI: 10.6084/m9.figshare.21723401.v1
title: Supplementary Material for: Oncoplastic breast conserving surgery: is there a need for standardization? Results of a nationwide survey

description: Introduction The NABON Breast Cancer Audit showed that more than 70% of the Dutch women undergoing surgery for breast cancer (BC) maintained their breast contour by breast conserving surgery (BCS) or by immediate reconstruction after ablative surgery. The proportion of oncoplastic surgery applied in patients undergoing breast conserving treatment (BCT) remains unknown. The aim of our study was to assess the need for standardization of oncoplastic breast conserving surgery (OPBCS) in an attempt to enable measurement of the quality of OPBCS. Methods To gain a better understanding of current practice in OPBCS we sent a questionnaire to all breast surgeons in the Netherlands who are member of the breast surgery working group (n=134). Results A total of 60 breast surgeons, representing different hospitals in the Netherlands, responded. 61.7% of the breast surgeons performed BCS in 60%-100% of their patients. 68.3% responded that BCS was performed using OPS techniques in up to 40% of their patients. OPBCS was defined as level I volume displacement by 45.2% of the breast surgeons and as BCS performed by a breast surgeon and plastic surgeon together by 32.3% of the breast surgeons. 94.5% indicated that there is a need for standardization of the definition of OPBCS in the Netherlands. Conclusion This study demonstrates that OPBCS is a major part of daily clinical practice of Dutch breast surgeons treating BC patients. Despite of this, there is no clear definition of OPS in BCT in the Netherlands. Only after standardization, a classification code and quality indicator can be initiated for OPBCS. Ultimately, this will facilitate improvement in quality of BC care.
DOI: 10.6084/m9.figshare.27174948.v1
title: <b>Global lake phytoplankton proliferation intensifies climate warming</b>

description: In lakes, phytoplankton sequester atmospheric carbon dioxide (CO<sub>2</sub>) and store it in the form of biomass organic carbon (OC); however, only a small fraction of this OC remains buried, while the remaining part is recycled to the atmosphere as CO<sub>2</sub> and methane (CH<sub>4</sub>). This has the potential effect of adding CO<sub>2</sub>-eq to the atmosphere and producing a warming effect due to the higher radiative forcing of CH<sub>4</sub> relative to CO<sub>2</sub>. In this study, we used globally collected data to quantify the CO<sub>2</sub>-eq feedback capacity of phytoplankton in global lakes by analyzing CO<sub>2</sub>-eq budget throughout the life cycle of phytoplankton, assess this feedback at a global scale, and predict the extent of this response under future warming scenarios.
DOI: 10.17632/dvvm9cns2x
title: Geospatial dataset from Kitchener's Map of Cyprus

description: The dataset consists of six geospatial layers. The coastal shape, the road network, the hydrographic network, the administration boundaries and the land cover/use derived by manual digitization from Kitchener’s trigonometrical map of Cyprus, published in 1885. Additionally, the dataset includes the layer of the populated places described in the Census of 1881, accompanied by its population attributes. The dataset covers the entire area of the island of Cyprus.
DOI: 10.17632/r239rh746h
title: Monoculture-experiment evidence that plant species identity regulates soil biota attributes and soil functions

description: Understanding how plant species identity modulates soil biota and their functions is a pivotal aspect in plant-soil interactions. In a three-year in situ monoculture experiment conducted on Inner Mongolia grasslands, we examined species identity-driven variations in soil microbe and nematode (biomass, richness, and structure), and soil carbon and nitrogen mineralization rates across 14 distinct plant species from 4 functional groups. Results showed that biomass or abundance of soil biota in annuals and biennials group was higher than that of other functional groups with relatively conservative strategies, but richness of soil biota tended to decrease. Piecewise SEM analysis revealed that effects of plant identity on attributes of soil microbe were mainly related to plant size traits, while effects of plant identity on attributes of nematodes were related to plant size traits and nematode resources. Plant species identity also affected the decomposition of soil organic carbon, with these changes in soil functions directly associated with the attributes of bacteria and fungi and plant size traits. Our findings demonstrate that effects of plant identity on the attributes of multiple functional groups in soil biota are mainly through strong bottom-up cascading effects, providing insight into plant-soil interaction studies from a species-based perspective. These findings will improve our ability to forecast the effects of changes in plant performance and plant community composition caused by future global change on soil biota communities and soil functions in grasslands.
DOI: 10.6084/m9.figshare.21405531.v4
title: Mangrove Forests Land Area and Crown Surface Cover Area Data

description: Mangrove ecosystems play a dominant role in global tropical and subtropical coastal wetlands. Remote sensing has a central role in mangrove conservation, as it is the preferred tool for monitoring spatiotemporal distribution changes. Through Landsat remote sensing image data, this study employed support vector machine (SVM) machine learning and Res-UNet deep learning to monitor the changes of mangrove forests and crown surface cover were monitored in Hainan Island from 1991 to 2021. Additionally, based on the crown surface cover area of mangrove forests in Hainan Island, the influencing mechanisms were analyzed via dynamic changes and landscape patterns. The following is the data package of our research: 1. The data in the folder (Res-UNet Deep Learning Classification) the classification results of Res-UNet deep learning algorithm, as well as its accuracy verification results. 2. The data in the folder (Influential Mechanisms) contains the total population, urban population, and rural population, GDP and gross output fishery value and climatic data and Pearson correlation analysis index for Hainan Island during the study period. The total population, urban population, and rural population, GDP, gross output fishery value, and shelter forests planting area of Hainan Island were obtained from the Annual Statistical Report of Hainan Province, and the climate data is downloaded from WorldClim data website (https://www.worldclim.org/data/index.html). 3. The data in the folder (Landscape Patterns) is the landscape pattern index and the annual change rate of mangrove forest crown surface cover in Hainan Island. 4. The data in the folder (SVM Machine Learning Classification) is the classification results of SVM machine learning algorithm, as well as its accuracy verification results. 5. The data in the folder (Ground Survey) are the distribution range of mangrove forests and the distribution of dominant mangrove tree species obtained by the team members in the ground survey in 2020.
DOI: 10.6084/m9.figshare.29202863.v1
title: Geographic map of sampling locations

description: This figure shows the geographic location of environmental samples collected in Miami-Dade and Broward Counties, Florida, as part of the EPA Project on non-targeted screening of organic contaminants in soil, dust, food, water, and urine. The sampling points were used to generate the dataset submitted to the EDI repository and analyzed via Orbitrap HRMS. The map provides spatial context for exposure assessment and environmental monitoring.
DOI: 10.17632/zjbcgr927x
title: Characterization and treatment outcomes of biologic therapy in super-responders and biologic-refractory psoriasis patients: A single-center retrospective study in China

description: Supplementary Figure 1 illustrates the inclusion and exclusion criteria for psoriasis patients in this study. The univariable logistic regression analyses of patient characteristics associated with super-responders, as compared to non-super-responders, are presented in Supplementary Table 1. The results of univariable logistic regression analyses of patient characteristics associated with biologic-refractory patients, in comparison to non-biologic-refractory patients, are provided in Supplementary Table 2.
DOI: 10.6084/m9.figshare.11379762.v2
title: Extended Data Table S4

description: Extended Data Table S4 for the mSWEEP manuscript.
DOI: 10.6084/m9.figshare.14847975.v1
title: DataSet

description: Japan Arrival Times.
DOI: 10.6084/m9.figshare.22655134.v2
title: Eddy Covariance CO2 Flux Gap-filling for Long Data Gaps: A Novel Framework Based on Machine Learning and Time Series Decomposition

description: Eddy Covariance CO2 Flux Gap-filling for Long Data Gaps: A Novel Framework Based on Machine Learning and Time Series Decomposition
DOI: 10.6084/m9.figshare.22802780.v1
title: Table S1.xlsxPlantC2U: Convolutional neural network based deep learning of cross-species sequence landscapes predicts plastid C-to-U RNA editing in plants

description: Table S1. The detailed information of plastid RNA editing sites collected in REDIdb 3.0. Table S2. The summary of the chloroplast C-to-U RNA editing sites dataset. Table S3. The performance of PlantC2U in independent test based on the different flanking sequence and the ratio of positive and negative instances from primary negative samples. Table S4. The performance of PlantC2U in independent test based on the different flanking sequence and the ratio of positive and negative instances from sequence clusters. Table S5. Identification of plastid C-to-U editing sites across eight tissues in <em>K. obovata.</em> Table S6. Annotation and functional prediction of plastid C-to-U editing sites on the protein-coding genes in <em>K. obovata</em>. Table S7. Identification of plastid C-to-U editing sites in <em>K. obovata</em> leaf tissues under chilling events. Table S8. The functional enrichment analysis of four DEGs (<em>psbA</em>, <em>psbM</em>, <em>rps12</em> and <em>ndhA</em>) Table S9. The detailed information of 50 RNA-seq datasets, covering 4 tissues from 24 mangrove species. Table S10. Identification of plastid C-to-U editing sites in other 24 mangrove species.
DOI: 10.6084/m9.figshare.25750335.v1
title: Dataset used in the submitted paper

description: N2O emission observation data for machine learning, comprising 1134 records in total, including 370 for maize, 230 for wheat, 219 for rice, and 315 for other crops.
DOI: 10.6084/m9.figshare.27998957.v1
title: A young crustal component in the Caroline plume

description: The geochemical variability in oceanic island basalts is linked to Earth’s deep mantle heterogeneity, with distinct mantle components of which origin is under debate. In this study, we found basalts from the Caroline Seamount Chain exhibit an unusually high primitive δ57Fe signature. The association of high δ57Fe with mildly depleted Nd–Hf isotope compositions indicates the involvement of a young crustal component in the Caroline plume, which was introduced into the Pacific Large Low Shear Velocity Province (LLSVP) by the subduction girdle surrounded Rodinia supercontinent about 600 million years ago. Similar endmembers are also found in basalts from hotspots near the boundary of the Pacific LLSVP, including Hawaii and Galapagos, but not seen in basalts from hotspots centered in the Pacific LLSVP. We suggest the circum-Rodinia subduction could lead to such preferential appearance of young crustal materials, and consequently result in the zoned compositional structure of the Pacific LLSVP.
DOI: 10.6084/m9.figshare.4789135.v1
title: Source data from Failure mechanism of hollow tree trunks due to cross-sectional flattening

description: Source data for generating figure 6
DOI: 10.6084/m9.figshare.6194429.v1
title: Modeling brain dynamics in brain tumor patients using TVB: Supplementary data

description: Supplementary material for paper "Modeling brain dynamics in brain tumor patients using The Virtual Brain" by Hannelore Aerts, Michael Schirner, Ben Jeurissen, Dirk Van Roost, Eric Achten, Petra Ritter and Daniele Marinazzo.<br><br>Figures show limited impact of TR on construction of FC matrices and parameter space exploration. In particular, figures show the similarity between simulated FC matrices using different TR values ("FCsim_avgFisherZ_TR.png"), and mean FC strength for both simulated FC matrices per subject ("FCsim_TR"). Further, parameter space exploration was performed using both different TR values, showing similar parameter profiles across TR, per subject ("PSE_TR_CON06T1.png" for control subject, and "PSE_TR_PAT16T1.png" for glioma patient).<br>
DOI: 10.17866/rd.salford.28904684.v1
title: Documents : Can We Talk About Death?

description: The Can We Talk About Death? Adaptation of Autobiographical Performance and Participant<br>Response in the Development of Performance to Enhance Conversations Around Death and<br>Dying project happened in 2023 at the University of Salford with a test performance (Can We<br>Talk About Death?) taking place in the May of that year. The project built on an earlier Practice<br>as Research (2019) entitled The Death, Dinner, and Performance: A Study of the Efficacy of<br>Performance to Enhance Conversations Around Death and Dying project. While that project<br>aimed to look at autobiographical performance as a prompt for difficult conversations in an<br>intimate setting, the Can We Talk About Death? project looked to adapt the earlier practice into<br>a public performance for an audience and in doing so, to explore that adaptation strategies<br>used in the process.
DOI: 10.6084/m9.figshare.14199266.v1
title: Bridge Acceleration Data under Hammer and Moving Load

description: The dataset includes a numerical simulation data and an experimental test<br>The numerical simulation data contains acceleration data from simply supported beam under moving sprung mass that were recorded from different stations. There are many scenarios of damaged and un-damaged bridge were considered.<br>The experimental data have acceleration signals recorded at different stations of a truss bridge subjected to a hammer impact load (only intact bridge).<br>The dataset can be used for damage detection purposes. <br>
DOI: 10.6084/m9.figshare.1570968.v1
title: GRID release 2015-10-09 in JSON

description: The second public release of the GRID database.Please note, the csv download only includes IDs, names & locations. See the JSON download for all metadata including types & relationshipsInsitutes added from the following sources:- Grant data from Estonia- Grant data from Slovakia- Grant data from United States- grant data data from the CrossRef database (top ~5000 most frequently occurring names)- institutes in the Index of American Universities (http://www.clas.ufl.edu/au/)<br>Metadata:- Coverage of institutes with types increased from 33% to 76%- Parent / Child and Affiliated relationships now included in database dump- Added all NIHR members- All institutes with a Fundref ID have complete metadata
DOI: 10.6084/m9.figshare.8109404.v1
title: Questionnaire about organ donation

description: Questionnaire about organ donation
DOI: 10.17605/osf.io/j2nyx
title: Online training to improve evidence-based leadership competencies among nurse leaders in China: a feasibility randomised controlled trial
DOI: 10.17632/pfntdc9ndy
title: Investigation of laser-induced cavity and plasma formation in water using double-pulse LIBS

description: Investigation of cavity and plasma formation on samples under water using a double pulse laser SpitLight Compact 400 PIV of the company Innolas Laser GmbH. High-speed images were taken by a high-speed camera IDT MotionPro Y7-S3. Spectra were measured with a spectrometer AvaSpec-ULS750F-USB2. Both laser pulses, high-speed camera and spectrometer were triggered by a delay generator Quantum Composers 9400 Series (MODEL 9428). The latest version contains the pulse energies calibrated to single pulse mode of the laser system.
DOI: 10.6084/m9.figshare.16766833.v2
title: Base de datos sobre "Reconocimiento de derechos LGBTIQ+ en América Latina"

description: El Observatorio de Reformas Políticas en América Latina presenta la siguiente base de datos que contiene información sobre el Reconocimiento de derechos LGBTIQ+ en América Latina.
DOI: 10.6084/m9.figshare.23915847.v1
title: AMS_in_Large_Herds_UC_Davis_Survey.pdf

description: <b>Survey of the Use of AMS in large herds - UC Davis</b>
DOI: 10.6084/m9.figshare.24846510.v1
title: PaiNN dataset and model for LiGa(SeO<sub>3</sub>)<sub>2</sub>

description: Can be used to run MD with the NeuralForceField repository. Units for the dataset are: kcal/mol for energy, kcal/mol-Å for forces, Å for units of length.
DOI: 10.6084/m9.figshare.27684216.v1
title: PSF

description: the psf.txt