cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0639nq1
title: CIL:9016, Coleps hirtus, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: A high resolution image of a cortical monokinetid showing the basal body as well as postciliary and transverse microtubular ribbons. Slender endosomal vesicles accumulate near the bottom of a parasomal sac which is located out of the plane of section, and a round mucocyst lies adjacent to the basal body. Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness. TEM taken on 5/25/69 by R. Allen with Philips 300 operating at 60kV. Neg. 14,500X. The raw film was scanned with an Epson Perfection V750 Pro. This high resolution image is suitable for quantitative analysis.

Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film; unprocessed raw data
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
DOI: 10.7910/dvn/c2i1fk
title: Replication Data for: Mind the gap: Partisan bias in justifying poliical violence in the United States

description: Political polarization in America has intensified beyond mere disagreement to what scholars characterize as sectarianism – a condition where partisan identity fundamentally shapes moral judgments. A key marker of sectarianism is asymmetric moral standards for violence, where aggression against political opponents is considered more justified than identical violence targeting one's own group. Using a survey experiment featuring a realistic political rally scenario, we find compelling evidence in support of such sectarianism: partisan bias in the US extends to evaluations of political violence. By manipulating the partisan affiliations of perpetrators and targets, as well as provocation severity, we find that both Democrats and Republicans exhibit substantial and symmetrical partisan bias. This double standard is particularly pronounced among strong partisans, who are nearly three times more likely to justify violence against the opposition than violence targeting their own party. These results extend sectarianism theory beyond policy preferences to physical violence, suggesting partisan identity now functions as a powerful perceptual filter that can legitimize political aggression when directed at opponents.
description: Survey fielded among U.S respondents by YouGov from January 25-31, 2024 (N = 2030).
DOI: 10.15468/dl.6a3k3x
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trachygenia"
 ]
}

 The dataset includes 120 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009715-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30141511
title: Online Resource: Reservoir Computing as a Promising Approach for False Data Injection Attack Detection in Smart Grids

description: <b>1_matlab_data_generation/</b><br>MATLAB scripts used to generate the synthetic datasets based on the IEEE 57-bus system. These scripts simulate clean power flow measurements and apply targeted FDIA manipulations to create labeled datasets for training and evaluation.<b>2_familiarize_with_models.ipynb</b><br>A preliminary notebook used to explore and understand the behavior and structure of various machine learning models in the context of FDIA detection.<b>3_literature_analysis_and_mapping.ipynb</b><br>Contains the Python code used for executing the systematic mapping study (SMS), including automated processing of literature data and thematic clustering.<b>4_final_models_pipeline.ipynb</b><br>The final implementation pipeline that loads the data, applies preprocessing and encoding (e.g., latency or ISI), trains the detection models, and stores performance metrics.<b>5_statistical_analysis.ipynb</b><br>Jupyter notebook that conducts the full statistical evaluation of all trained models, including hypothesis testing (Shapiro-Wilk, Friedman, Wilcoxon) and visualization of key performance metrics.<b>datasets_and_case/</b><br>Directory containing all 21 generated datasets (plus the base case). These include manipulated datasets with varying attack intensities and compromised meter counts.<b>literature_data/</b><br>CSV and text exports of the literature search results from scientific databases, used as the basis for the systematic mapping study.rc_all_models_final_results.csv
DOI: 10.6084/m9.figshare.30141511.v1
title: Online Resource: Reservoir Computing as a Promising Approach for False Data Injection Attack Detection in Smart Grids

description: <b>1_matlab_data_generation/</b><br>MATLAB scripts used to generate the synthetic datasets based on the IEEE 57-bus system. These scripts simulate clean power flow measurements and apply targeted FDIA manipulations to create labeled datasets for training and evaluation.<b>2_familiarize_with_models.ipynb</b><br>A preliminary notebook used to explore and understand the behavior and structure of various machine learning models in the context of FDIA detection.<b>3_literature_analysis_and_mapping.ipynb</b><br>Contains the Python code used for executing the systematic mapping study (SMS), including automated processing of literature data and thematic clustering.<b>4_final_models_pipeline.ipynb</b><br>The final implementation pipeline that loads the data, applies preprocessing and encoding (e.g., latency or ISI), trains the detection models, and stores performance metrics.<b>5_statistical_analysis.ipynb</b><br>Jupyter notebook that conducts the full statistical evaluation of all trained models, including hypothesis testing (Shapiro-Wilk, Friedman, Wilcoxon) and visualization of key performance metrics.<b>datasets_and_case/</b><br>Directory containing all 21 generated datasets (plus the base case). These include manipulated datasets with varying attack intensities and compromised meter counts.<b>literature_data/</b><br>CSV and text exports of the literature search results from scientific databases, used as the basis for the systematic mapping study.rc_all_models_final_results.csv
DOI: 10.6075/j0z60mpm
title: CIL:50517, ultrastructural features in AD neurons. In Cell Image Library

description: We observed several interesting ultrastructural features in AD neurons. These include associations of paired helical filaments (PHF) with the membranes of the nuclear envelope and with ribosomes, differences between the distribution of the Golgi apparatus in neurons containing paired helical filament bundles as compared to neurons without these filaments, and abnormalities in the microtubules of neuronal processes in the vicinity of neuritic plaques.
description: Item type: recorded image
Imaging mode: serial section TEM
description: We examined the structural organization of cytoskeletal components and membrane systems in neurons of well preserved biopsy material from Alzheimer‚Äôs disease (AD). Information was obtained from thin sectioned material using conventional electron microscopy and from thick sections with the high voltage electron microscope. Stereo viewing and computer assisted serial reconstruction techniques were employed to visualize three-dimensional relationships among cytoplasmic components of cortical neurons.
DOI: 10.6075/j0x63kj7
title: CIL:50401, Mus musculus, Mouse brain tissue, Mouse brain tissue expressing tdTomato in corticotropin releasing factor-expressing neurons. In Cell Image Library

description: In this study, we developed an electron microscopy method, called CryoChem, to optimally preserve the morphology of genetically labeled tissues. This method also allows us to perform 3D correlated light and electron microscopy (CLEM) in the well-preserved tissue. This video shows the overlay of the tdTomato confocal volume with the corresponding SBEM volume of a mouse brain expressing tdTomato in corticotropin releasing factor-expressing neurons.
description: Item type: animation
Imaging mode: 3D correlated light and electron microscopy (CLEM), using a combination of serial block face SEM (SBEM) and confocal microscopy
description: Brief description of sample preparation
After cryofixation by high-pressure freezing and freeze-substitution, cryofixedmouse brain slices were rehydrated gradually. Rehydrated samples were then imaged with confocal microscopy to capture the DRAQ5 and tdTomato signals. Next, the samples were stained using a high-contrast en bloc staining protocol. Then the samples were dehydrated for resin infiltration and embedding, followed by imaging with X-ray microscopy and then SBEM.

Confocal Microscopy
After freeze-substitution and rehydration, the mouse brain slice was placed in ice-cold 0.15 M sodium cacodylate for imaging. Confocal volumes of DRAQ5 and tdTomato signals were collected on an Olympus FluoView 1000 confocal microscope with a 20X air and 60X water objectives using 561 nm and 633 nm excitation.

Serial Block-face Scanning Electron Microscopy
The mouse brain slice wasimaged with a Merlin scanning electron microscope equipped with a 3View2XP and OnPoint backscatter detector. The volume was collected at 2 kV, with 6.8 nm pixels; 70 nm Z steps and 15% local gas injection. The raster size was 10k x 15k and the Z dimension was 659 sections. The volume was aligned using cross correlation and visualized using IMOD. 

Light and electron microscope volume registration
The confocal and SBEM volumes were registered using the landmark tool of Amira 6.3. Heterochromatin structures revealed by DRAQ5 labeling and visible in the SBEM volume were used as landmark points for the registration.
DOI: 10.5281/zenodo.17287983
title: Notas de leitura do processo "Ambulatorio de la Seguridad Social y Agencia del Inst. Nacional de Previsión en Écija [1971-72]" existente no Archivo Municipal de Écija, em Écija (Sevilla).

description: Registo efetuado em 2024.08.23 no âmbito do projeto de investigação ReARQ.IB – Built Environment Knowledge for Resilient, Sustainable Communities: Understanding Everyday Modern Architecture and Urban Design in the Iberian Peninsula (1939-1985) (ERC GA949686) e publicado online em https://arquitecturaaqui.eu/pt/documentacao/processos/48483/ambulatorio-de-la-seguridad-social-y-agencia-del-inst-nacional-de-prevision-en-ecija. 

Dados exportados da plataforma Arquitectura Aqui (https://arquitecturaaqui.eu), repositório do referido projeto, em outubro de 2025.
DOI: 10.5281/zenodo.17287984
title: Notas de leitura do processo "Ambulatorio de la Seguridad Social y Agencia del Inst. Nacional de Previsión en Écija [1971-72]" existente no Archivo Municipal de Écija, em Écija (Sevilla).

description: Registo efetuado em 2024.08.23 no âmbito do projeto de investigação ReARQ.IB – Built Environment Knowledge for Resilient, Sustainable Communities: Understanding Everyday Modern Architecture and Urban Design in the Iberian Peninsula (1939-1985) (ERC GA949686) e publicado online em https://arquitecturaaqui.eu/pt/documentacao/processos/48483/ambulatorio-de-la-seguridad-social-y-agencia-del-inst-nacional-de-prevision-en-ecija. 

Dados exportados da plataforma Arquitectura Aqui (https://arquitecturaaqui.eu), repositório do referido projeto, em outubro de 2025.
DOI: 10.6075/j0qn65j1
title: CIL:50605, Homo sapiens, monocyte. In Cell Image Library

description: Imaging mode: microscopy
Visualization methods: x100
description: Cerebrospinal fluid, cytocentrifugation, May-Grunwald-Giemsa stain.
description: The monocyte type cell contained at least 5 erythrocytes. The nucleus was focally deformed, compressed by two of them,.
DOI: 10.6075/j0pv6j8r
title: CIL:50604, Homo sapiens, monocyte. In Cell Image Library

description: Cerebrospinal fluid, cytocentrifugation, May-Grunwald-Giemsa stain.
description: Imaging mode: microscopy
Visualization methods: x100
description: The monocyte type cell contained at least 4 erythrocytes. The nucleus was focally deformed, compressed by one erythrocyte.
DOI: 10.6075/j02806gk
title: CIL:50602, Homo sapiens, monocyte. In Cell Image Library

description: Cerebrospinal fluid, cytocentrifugation, May-Grunwald-Giemsa stain.
description: The monocyte type cell contained one erythrocyte.
description: Imaging mode: microscopy
Visualization methods: x100
DOI: 10.6075/j00000qv
title: CIL:50521, Retinal cross section of C. mydas juvenile from dorsal region with opsins double immunostained with a fluorophore tagged secondary. In Cell Image Library

description: Retinal cross section of C. mydas juvenile from dorsal region with opsins double immunostained with a fluorophore tagged secondary; 1:500 diluted CERN-906 cone opsin (green), 1:500 diluted MAB5356 rhodopsin (red) under a NIKON 90i confocal microscope.
description: Item type: recorded image
Imaging mode: confocal microscopy
DOI: 10.6075/j0qj7fxm
title: CIL:50518, ultrastructural features in AD neurons. In Cell Image Library

description: We examined the structural organization of cytoskeletal components and membrane systems in neurons of well preserved biopsy material from Alzheimer‚Äôs disease (AD). Information was obtained from thin sectioned material using conventional electron microscopy and from thick sections with the high voltage electron microscope. Stereo viewing and computer assisted serial reconstruction techniques were employed to visualize three-dimensional relationships among cytoplasmic components of cortical neurons.
description: Item type: recorded image
Imaging mode: serial section TEM
description: We observed several interesting ultrastructural features in AD neurons. These include associations of paired helical filaments (PHF) with the membranes of the nuclear envelope and with ribosomes, differences between the distribution of the Golgi apparatus in neurons containing paired helical filament bundles as compared to neurons without these filaments, and abnormalities in the microtubules of neuronal processes in the vicinity of neuritic plaques.
DOI: 10.6075/j0m32td4
title: CIL:50513, cytoskeletal components and membrane systems in neurons of well preserved biopsy material from Alzheimer's disease. In Cell Image Library

description: Item type: recorded image
Imaging mode: serial section TEM
description: We observed several interesting ultrastructural features in AD neurons. These include associations of paired helical filaments (PHF) with the membranes of the nuclear envelope and with ribosomes, differences between the distribution of the Golgi apparatus in neurons containing paired helical filament bundles as compared to neurons without these filaments, and abnormalities in the microtubules of neuronal processes in the vicinity of neuritic plaques.
description: We examined the structural organization of cytoskeletal components and membrane systems in neurons of well preserved biopsy material from Alzheimer‚Äôs disease (AD). Information was obtained from thin sectioned material using conventional electron microscopy and from thick sections with the high voltage electron microscope. Stereo viewing and computer assisted serial reconstruction techniques were employed to visualize three-dimensional relationships among cytoplasmic components of cortical neurons.
DOI: 10.6075/j0f76b5j
title: CIL:50354, phantom. In Cell Image Library

description: Item type: recorded image
Imaging mode: X-ray micrograph
Source of contrast: Fe and U aqueous solutions
description: Biological samples are frequently stained with heavy metals in preparation for examining the macro, micro and ultra-structure using X-ray microtomography and electron microscopy. A single X-ray microtomography scan reveals detailed 3D structure based on staining density, yet it lacks both material composition and functional information. Using a commercially available polychromatic X-ray source, energy integrating detectors and a two-scan configuration labelled by their energy- High and Low, we demonstrate how a specific element, here shown with iron, can be detected from a mixture with other heavy metals. With proper selection of scan configuration, achieving strong overlap of source characteristic emission lines and iron K-edge absorption, iron absorption was enhanced enabling K-edge imaging. Specifically, iron images were obtained by scatter plot material analysis, after selecting specific regions within scatter plots generated from the High and Low scans. Using this method, we identified iron rich regions associated with an iron staining reaction that marks the nodes of Ranvier along nerve axons within mouse spinal roots, also stained with osmium metal commonly used for electron microscopy.
 
60kVp with fe filtration.
description: A whole, intact retina was isolated from an excised mouse eye and dissected away from the retinal pigment epithelium; the retina was flat mounted with the ganglion-cell side up onto a glass chamber and superfused with Ames' medium during ex-vivo patch clamp electrophysiological experiments as previously described (see Estevez et al., 2012, J. Neuroscience). The recording pipette of the cell contained Lucifer yellow dye which was dialyzed into the cell over the course of a 30 minute recording. At the end of the recording, the tissue was fixed with 4% paraformaldehyde in 0.1M phosphate buffered saline (PBS) for 45 minutes at room temperature. The tissue was washed 3 x 15 minutes in PBS, incubated for 2 hours in blocking solution (2% Triton X-100 and 5% donkey serum in PBS at 4℃) at room temperature and incubated with rabbit anti-lucifer yellow (1:500; Life Technologies, Carlsbad, CA) for 2 nights at 4℃. Then the tissue was rinsed 6 x 10 minutes in PBS and counterstained with donkey anti-rabbit alexa 488 (1:200; Life Technologies, Carlsbad, CA 1: 200) for two hours at room temperature. The immunostained retina was washed 3 x 15 minutes in PBS, mounted on a glass slide and coverslipped using Prolong Gold mouting medium (Life Technologies, Carlsbad, CA). 

Images were acquired with a Zeiss LSM 510 Meta laser scanning microscope with a plan-apochromat 20x/0.8 objective. The dye was excited with a 488 nm laser at 5% emission was detected through a 505-550 band pass filter and imaged at 12-bits. The image stack consisted of a 450 μm x 450 μm window through 14 stacks at 0.5 μm (total of 7 μm in z-depth) through the ganglion cell layer and ON-sublayer of the inner plexiform layer of the retina.
DOI: 10.6075/j0sn07m3
title: CIL:50353, phantom. In Cell Image Library

description: Item type: recorded image
Imaging mode: X-ray micrograph
Parameter imaged: recorded image
Source of contrast: Fe and U aqueous solutions
description: Biological samples are frequently stained with heavy metals in preparation for examining the macro, micro and ultra-structure using X-ray microtomography and electron microscopy. A single X-ray microtomography scan reveals detailed 3D structure based on staining density, yet it lacks both material composition and functional information. Using a commercially available polychromatic X-ray source, energy integrating detectors and a two-scan configuration labelled by their energy- High and Low, we demonstrate how a specific element, here shown with iron, can be detected from a mixture with other heavy metals. With proper selection of scan configuration, achieving strong overlap of source characteristic emission lines and iron K-edge absorption, iron absorption was enhanced enabling K-edge imaging. Specifically, iron images were obtained by scatter plot material analysis, after selecting specific regions within scatter plots generated from the High and Low scans. Using this method, we identified iron rich regions associated with an iron staining reaction that marks the nodes of Ranvier along nerve axons within mouse spinal roots, also stained with osmium metal commonly used for electron microscopy.
 
30kVp with no filtration
description: XRM was performed on a Versa 510, (Carl Zeiss X-ray Microscopy, Pleasanton, CA 94588). The Versa 510 is equipped with a polychromatic tungsten source, tunable in the voltage range 30-160kVp. Scan configuration: "Low" -30kVp peak tube potential without filtration, exposure time 20-90sec. "High"-60kVp peak tube potential, filtration 25μm thick iron filter, exposure time 10-120sec. Common scan conditions: binning 1, source-rotation axis distance 7.5mm, detector-rotation axis distance 5mm, pixel size 0.394μm, optical magnification x20, rotation angle -180° to +180°, number of views 3201. Iron filtration used a 0.001"x1"x2" foil placed at the X-ray tube exit slit. The foil was of 3N5 purity and sold by ESPI Metals, Ashland, OR 97520.
DOI: 10.6075/j0ms3rc4
title: CIL:50451, Mus musculus, Mouse brain tissue. In Cell Image Library

description: Brief description of sample preparation
After cryofixation by high-pressure freezing and freeze-substitution, cryofixedmouse brain slices were rehydrated gradually. Rehydrated samples were then imaged with confocal microscopy to capture the DRAQ5 and tdTomato signals. Next, the samples were stained using a high-contrast en bloc staining protocol. Then the samples were dehydrated for resin infiltration and embedding, followed by imaging with X-ray microscopy and then SBEM.

Serial Block-face Scanning Electron Microscopy
The mouse brain slice wasimaged with a Merlin scanning electron microscope equipped with a 3View2XP and OnPoint backscatter detector. The volume was collected at 2 kV, with 6.8 nm pixels; 70 nm Z steps and 15% local gas injection. The raster size was 10k x 15k and the Z dimension was 659 sections. The volume was aligned using cross correlation and visualized using IMOD.
description: In this study, we developed an electron microscopy method, called CryoChem, to optimally preserve the morphology of genetically labeled tissues. This method also allows us to perform 3D correlated light and electron microscopy (CLEM) in the well-preserved tissue. This dataset contains the SBEM volume of the CLEM experiment in a mouse brain expressing tdTomato in corticotropin releasing factor-expressing neurons.
description: Item type: recorded image
Imaging mode: serial block face SEM (SBFSEM)