cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21505988.v1
title: IMPACT OF THE SITTING POSITION ON LUMBAR LORDOSIS AND ITS CORRELATION WITH PELVIC PARAMETERS

description: ABSTRACT Objective: To evaluateboth the correlation between lumbar accommodation and pelvic parametersin different types of lordosis and the participation of different lumbar segments in the accommodation of lordosis in the standing and sitting positions. Methods: A retrospective study analyzingpatient images in standing and sitting positions. Correlations were conducted among the measured data: Cobb angle of the lumbar lordosis (LL,type of lordosis, pelvic incidence (PI),sacral slope (SS),pelvic tilt (PT), and the angulation of the L1-L2/L2-L3/L3-L4/L4-L5/L5-S1 segments. Results: Fortypatients were included, 20 men and 20 women. The mean age was 60.8 (±11.5). Of these patients, 10.3% were classified as Roussouly type 2, 35.9% as type 3, 25.6% as type 3A, and 28.2%as type 4.There was a weakcorrelation between LL and PT, however, an inverse correlation between the two (r=-0.183 and p=0.264) was observed. SS hadthe strongest correlation with LL (r&gt; 0.75). Only the correlation between LL and PI was stronger when sitting than standing (p=0.014). The pelvic parameters and angulations of the segments and lumbar discs when standing and sitting were different (p&lt;0.05). In both positions, there was a difference in the contribution of the segments to the LL (p&lt;0.001). On average, the differences in LL between standing and sitting wereequal among theRoussouly classifications (p=0.332). Conclusions: There was a correlation between the LL and the pelvic parameters, being more evident with the SS than with the other parameters. There was no difference in the accommodation of the LL in the different Roussouly types either standing or sitting. Regardless of the position,the L4-S1 segments were predominant in the composition of LL. Level of evidence IV; Retrospective.
DOI: 10.6084/m9.figshare.21505991
title: Clinical pharmaceutical services of primary health care of the Federal District: A discussion based on the SWOT matrix

description: Abstract In the epistemic field, several studies demonstrate the importance of pharmaceutical services in health care networks. Nonetheless, literature still addresses the strengths and barriers present in the provision of these services in an incipient way. Thus, this study aimed to understand these contexts in the development of clinical services for primary health care in the Federal District, Brazil. A qualitative study adopted the technique of open-script interview, structured based on the logic of the SWOT matrix. Pharmacists reported weaknesses such as precariousness and scarcity of physical infrastructure, material, and human resources. As threats, they discussed the lack of social recognition, discontinuities of government actions, and lack of preparation of the pharmacist for the provision of clinical services. Regarding themes pertaining to the service’s strengths and opportunities, the advances in propositions and executions of public policies, actions, and governmental programs that have expanded the pharmaceutical workforce in primary care and that are impelling the accomplishment of clinical services were listed. This study contributes to understanding the scenario of the development of clinical pharmaceutical services, and consequently provides subsidies for the actions of planning, evaluation and qualification of health services.
DOI: 10.6084/m9.figshare.21505991.v1
title: Clinical pharmaceutical services of primary health care of the Federal District: A discussion based on the SWOT matrix

description: Abstract In the epistemic field, several studies demonstrate the importance of pharmaceutical services in health care networks. Nonetheless, literature still addresses the strengths and barriers present in the provision of these services in an incipient way. Thus, this study aimed to understand these contexts in the development of clinical services for primary health care in the Federal District, Brazil. A qualitative study adopted the technique of open-script interview, structured based on the logic of the SWOT matrix. Pharmacists reported weaknesses such as precariousness and scarcity of physical infrastructure, material, and human resources. As threats, they discussed the lack of social recognition, discontinuities of government actions, and lack of preparation of the pharmacist for the provision of clinical services. Regarding themes pertaining to the service’s strengths and opportunities, the advances in propositions and executions of public policies, actions, and governmental programs that have expanded the pharmaceutical workforce in primary care and that are impelling the accomplishment of clinical services were listed. This study contributes to understanding the scenario of the development of clinical pharmaceutical services, and consequently provides subsidies for the actions of planning, evaluation and qualification of health services.
DOI: 10.6084/m9.figshare.21505993
title: Surveillance system for Healthcare-associated endophthalmitis at state level in a middle-income country: preliminary results

description: ABSTRACT Purpose: To describe the implementation pro cess and the preliminary results of a surveillance system for healthcare-associated endophthalmitis. Methods: This is a case study of the implementation of a surveillance system for healthcare-associated endophthalmitis. The system for healthcare-associated endophthalmitis is a structured system that enables surveillance of cases of healthcare-associated endophthalmitis after intraocular procedures, developed and coordinated by the Division of Hospital Infection at the State Health Department, São Paulo, Brazil. The implementation process included a pilot phase, followed by a scaling-up phase. Data were reported monthly to the Division of Hospital Infection by participating healthcare facilities that performed intraocular procedures in the state of São Paulo, Brazil, from September 2017 to December 2019. Results: Among the 1,483 eligible healthcare facilities, 175 engaged in the study (participation rate of 11.8%), reporting 222,728 intraocular procedures performed, of which 164,207 were cataract surgery and 58,521 were intravitreal injections. The overall incidence rate of endophthalmitis was reported to be 0.05% (n=105; 80 cases after cataract surgery and 25 cases after intravitreal injections). The incidence rates for healthcare facilities ranged from 0.02% to 4.55%. Most cases were caused by gram-positive bacteria, mainly Staphylococcus spp. In 36 (46.2%) of the cases, there was no bacterial growth; no sample was collected in 28 (26.7%) cases. This system for healthcare-associated endophthalmitis enabled the identification of an outbreak of four cases of endophthalmitis after intravitreal injections. Conclusion: The system for healthcare-associated endophthalmitis proved to be operationally viable and efficient for monitoring cases of endophthalmitis at the state level.
DOI: 10.6084/m9.figshare.21505993.v1
title: Surveillance system for Healthcare-associated endophthalmitis at state level in a middle-income country: preliminary results

description: ABSTRACT Purpose: To describe the implementation pro cess and the preliminary results of a surveillance system for healthcare-associated endophthalmitis. Methods: This is a case study of the implementation of a surveillance system for healthcare-associated endophthalmitis. The system for healthcare-associated endophthalmitis is a structured system that enables surveillance of cases of healthcare-associated endophthalmitis after intraocular procedures, developed and coordinated by the Division of Hospital Infection at the State Health Department, São Paulo, Brazil. The implementation process included a pilot phase, followed by a scaling-up phase. Data were reported monthly to the Division of Hospital Infection by participating healthcare facilities that performed intraocular procedures in the state of São Paulo, Brazil, from September 2017 to December 2019. Results: Among the 1,483 eligible healthcare facilities, 175 engaged in the study (participation rate of 11.8%), reporting 222,728 intraocular procedures performed, of which 164,207 were cataract surgery and 58,521 were intravitreal injections. The overall incidence rate of endophthalmitis was reported to be 0.05% (n=105; 80 cases after cataract surgery and 25 cases after intravitreal injections). The incidence rates for healthcare facilities ranged from 0.02% to 4.55%. Most cases were caused by gram-positive bacteria, mainly Staphylococcus spp. In 36 (46.2%) of the cases, there was no bacterial growth; no sample was collected in 28 (26.7%) cases. This system for healthcare-associated endophthalmitis enabled the identification of an outbreak of four cases of endophthalmitis after intravitreal injections. Conclusion: The system for healthcare-associated endophthalmitis proved to be operationally viable and efficient for monitoring cases of endophthalmitis at the state level.
DOI: 10.6084/m9.figshare.21505017
title: How to effectively evaluate the mainstream Gross Primary Production Products in regions with few observation data?

description: The dynamic of Gross Primary Production (GPP) is key to understand the global carbon cycle. Multiple GPP products are currently available based on remote sensing, Light Use Efficiency model (LUE) or diagnostic biophysical model. However, little knowledge is available in understanding spatial patterns of the uncertainty of different GPP products and potential drivers over the Central Asia (CA), a fragile environment for accurate GPP estimation. This study investigates the sensitivity of the 8-day, monthly and yearly GPP uncertainties based on the three-cornered hat (TCH) method and Shapley additive explanation (SHAP) model in terms of vegetation, energy, water, climate and terrain factors in the dryland ecosystem over the 2003-2015 period. Ten GPP products are involved in this work, including one product (FLUXCOM) from machine learning (ML), six products (EC-LUE, FluxSat, LUEopt, MODIS, MuSyQ and VPM) based on the Light Use Efficiency model (LUE), two products (GOSIF and NIRv) from satellite-based direct proxies (Proxies) and one product (PML) from the diagnostic biophysical model. The results indicate that the spatial distribution of the ten GPP products in CA showed similar patterns at different time scales, while their values varied depending on various products and for different time scales. According to the EC observations and the TCH-based uncertainties, the FLUXCOM product showed smaller relative uncertainties than other products. The attribution analysis denotes that the sources of uncertainty of the GPP varied for each product. The installation of EC stations in CA is an effective way to improve the accuracy of all methods. In addition, the FLUXCOM should adapt the vegetation- related module to the dryland environment of CA. The LUE model should optimize the LUE parameters for the dryland ecosystem and incorporate the water related variables in the model. The Proxies’ model should incorporate the water and energy variables (such as soil moisture and radiation) as input data to improve their performance in CA. The diagnostic model should consider the elevation variable as input data, which may improve the performance of the PML in CA. Our results do not only provide an important basis for the selection of GPP products in the study of the carbon cycle in CA, but also offer a new insight into the GPP model development and improvement for the dryland ecosystem.
DOI: 10.6084/m9.figshare.21505017.v1
title: How to effectively evaluate the mainstream Gross Primary Production Products in regions with few observation data?

description: The dynamic of Gross Primary Production (GPP) is key to understand the global carbon cycle. Multiple GPP products are currently available based on remote sensing, Light Use Efficiency model (LUE) or diagnostic biophysical model. However, little knowledge is available in understanding spatial patterns of the uncertainty of different GPP products and potential drivers over the Central Asia (CA), a fragile environment for accurate GPP estimation. This study investigates the sensitivity of the 8-day, monthly and yearly GPP uncertainties based on the three-cornered hat (TCH) method and Shapley additive explanation (SHAP) model in terms of vegetation, energy, water, climate and terrain factors in the dryland ecosystem over the 2003-2015 period. Ten GPP products are involved in this work, including one product (FLUXCOM) from machine learning (ML), six products (EC-LUE, FluxSat, LUEopt, MODIS, MuSyQ and VPM) based on the Light Use Efficiency model (LUE), two products (GOSIF and NIRv) from satellite-based direct proxies (Proxies) and one product (PML) from the diagnostic biophysical model. The results indicate that the spatial distribution of the ten GPP products in CA showed similar patterns at different time scales, while their values varied depending on various products and for different time scales. According to the EC observations and the TCH-based uncertainties, the FLUXCOM product showed smaller relative uncertainties than other products. The attribution analysis denotes that the sources of uncertainty of the GPP varied for each product. The installation of EC stations in CA is an effective way to improve the accuracy of all methods. In addition, the FLUXCOM should adapt the vegetation- related module to the dryland environment of CA. The LUE model should optimize the LUE parameters for the dryland ecosystem and incorporate the water related variables in the model. The Proxies’ model should incorporate the water and energy variables (such as soil moisture and radiation) as input data to improve their performance in CA. The diagnostic model should consider the elevation variable as input data, which may improve the performance of the PML in CA. Our results do not only provide an important basis for the selection of GPP products in the study of the carbon cycle in CA, but also offer a new insight into the GPP model development and improvement for the dryland ecosystem.
DOI: 10.6084/m9.figshare.21505994.v1
title: Synopsis of Orchidaceae Juss. in the northern lowland Atlantic Forest

description: ABSTRACT Lowland forests, also known as tabuleiro forests, are the predominant phytophysiognomy in the Atlantic Coastal Forest in northeastern Brazil. We inventoried the Orchidaceae present in the northern section of those forests, from the state of Rio Grande do Norte until the southern region of the state of Pernambuco. We examined specimens from seven regional herbaria and undertook field expeditions to four conservation units in the region. A total of 65 species belonging to 36 genera and to subfamilies Epidendroideae (44 species), Orchidoideae (16), and Vanilloideae (5) were identified. The most diverse genera are Epidendrum e Habenaria, with eight and seven species, respectively. Native species represented 96 % of the total observed, with 27 % being endemic to Brazil. Epiphytic (35) and terrestrial (27) species predominated; only three species are hemiepiphytic. We registered 14 new records of species for Rio Grande do Norte, two for Paraíba, and one for Pernambuco. Diagnoses of genera and species, as well as an identification key, data on geographic distribution, taxonomic and ecological comments, conservation status, and photos of the species are provided.
DOI: 10.6084/m9.figshare.21505994
title: Synopsis of Orchidaceae Juss. in the northern lowland Atlantic Forest

description: ABSTRACT Lowland forests, also known as tabuleiro forests, are the predominant phytophysiognomy in the Atlantic Coastal Forest in northeastern Brazil. We inventoried the Orchidaceae present in the northern section of those forests, from the state of Rio Grande do Norte until the southern region of the state of Pernambuco. We examined specimens from seven regional herbaria and undertook field expeditions to four conservation units in the region. A total of 65 species belonging to 36 genera and to subfamilies Epidendroideae (44 species), Orchidoideae (16), and Vanilloideae (5) were identified. The most diverse genera are Epidendrum e Habenaria, with eight and seven species, respectively. Native species represented 96 % of the total observed, with 27 % being endemic to Brazil. Epiphytic (35) and terrestrial (27) species predominated; only three species are hemiepiphytic. We registered 14 new records of species for Rio Grande do Norte, two for Paraíba, and one for Pernambuco. Diagnoses of genera and species, as well as an identification key, data on geographic distribution, taxonomic and ecological comments, conservation status, and photos of the species are provided.
DOI: 10.6084/m9.figshare.21176215
title: Supplementary Material for: Inhibition of Phosphoinositide 3-Kinase Gamma protects endothelial cells via the Akt signaling pathway in sepsis-induced acute kidney injury

description: Introduction: Sepsis is a primary cause of death in critically ill patients and characterized by multiple organ dysfunction, including sepsis-induced acute kidney injury (AKI), which contributes to high mortality in sepsis. However, its pathophysiological mechanisms remain unclear. The kidney has one of the richest and most diversified endothelial cell populations in the body. This study was designed to investigate the effects of endothelial dysfunction in sepsis-induced AKI and explore possible intervention measures to offer new insight for the pathogenesis and treatment of sepsis-induced AKI. Methods: The circulating levels of endothelial adhesion molecules were detected in patients with sepsis and healthy controls, to observe the role of endothelial damage in sepsis and sepsis-induced AKI. A murine sepsis model induced by cecal ligation and perforation was pretreated with a phosphoinositide 3-kinase gamma (PI3Kγ) inhibitor (CZC24832), and survival, kidney damage and renal endothelial injury were assessed by pathological examination, immunohistochemistry (IHC), quantitative polymerase chain reaction and Western blotting. Lipopolysaccharides and CZC24832 were administered to human umbilical vein endothelial cells in vitro, and endothelial cell function and the expression of adhesion molecules were evaluated. Results: Endothelial damage was more serious in sepsis-induced AKI than that in non-AKI, and the inhibition of PI3Kγ alleviates renal endothelial injury in a murine sepsis model, protecting endothelial cell function, and repairing endothelial cell injury through the Akt signaling pathway. Conclusions: In this study, endothelial cell dysfunction plays an important role in sepsis-induced AKI, and the inhibition of PI3Kγ alleviates endothelial cell injury in sepsis-induced AKI through the PI3Kγ/Akt pathway, providing novel targets for treating sepsis and related kidney injury.
DOI: 10.18739/a21j9774c
title: Hydrogen and oxygen isotope ratio measurements for 15 meter Owen Ice Core, Summit, Greenland, 1977-2010
DOI: 10.48443/05k7-e011
title: Chemical properties of surface water (DP1.20093.001)
title: RELEASE-2021

description: This data product contains the quality-controlled, native sampling resolution data from NEON's surface water chemistry sampling protocol. Subsamples are analyzed at NEON domain headquarters for alkalinity and acid neutralizing capacity (ANC); other subsamples are sent to external facilities for a broad suite of analytes, including dissolved and total nutrients and carbon, cations and anions, and general chemistry. For additional details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage.

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

swc_domainLabData:  60

swc_externalLabData:  150

swc_fieldData:  30

swc_fieldSuperParent:  30

swc_externalLabSummaryData:  14
description: Grab samples of surface water at NEON aquatic sites are collected in streams and rivers 15- 26 times per year and 12 times per year in lakes. In streams and rivers, 12 samples are collected at regular intervals during the sampling season while the remaining 14 are collected on an irregular basis to capture major flow events. In lakes samples are collected approximately monthly and to capture ice-on and ice-off events. The field protocol used by NEON for collecting surface water chemistry samples follows the general requirements set forth by the 2011 USGS National Water-Quality Assessment (NAWQA) Program and the Arctic LTER standard operating procedures (SOP). Sample handling and preparation portions of this protocol follow the general requirements set forth by the USGS National Water-Quality Assessment (NAWQA) Program (USGS 2006).
DOI: 10.5281/zenodo.3779473
title: Model Results for "Groundwater Flow to Gale Crater in an Episodically Warm Climate"

description: Results from the bous_therm code for "Groundwater Flow to Gale Crater in an Episodically Warm Climate" bous_therm code is at doi:10.5281/zenodo.3779418 After extraction, the folder goes in the top directory of the bous_therm repository. It can then be read, analyzed, and plotted by scripts in the repository.
DOI: 10.5281/zenodo.3894716
title: Multi-Cost Bounded Tradeoff Analysis in MDP - Artifact

description: This artifact contains the data and scripts to replicate the experiments from the paper ```<br> Multi-Cost Bounded Trade-off Analysis in MDP<br> ```<br> by Arnd Hartmanns, Sebastian Junges, Joost-Pieter Katoen, and Tim Quatmann
DOI: 10.5281/zenodo.4557401
title: QSMs, point cloud and harvest data from a destructive forest biomass experiment in Belgium using terrestrial laser scanning

description: This dataset contains the point clouds, quantitative structure models (QSM) and destructively sampled reference mass and density of 65 trees. A part of this dataset was used in Demol et al. (2021) https://doi.org/10.1007/s00468-020-02067-7 and many details about the site and data collection can be found in this publication. The point cloud data was collected with a RIEGL VZ-1000 and VZ-400 time-of-flight laser scanner at five sites, covering four species (<em>Fagus sylvatica</em>, <em>Pinus sylvestris</em>, <em>Fraxinus excelsior</em>, <em>Larix decidua</em>) on windless and days without precipitation. The scans were coregistered in RiScanPro. Single trees were extracted from the forest scene using treeseg (https://github.com/apburt/treeseg) and filtered using a deviation filter (max 12), and reflectance filter (min -17 dB), and then downsampled to a point spacing of 10 or 15 mm. We used TreeQSM v.2.3 (https://github.com/InverseTampere/TreeQSM) to build QSMs from single tree point clouds. Fresh total tree mass was measured on-site after felling of the trees. Fresh mass was converted to tree volume using fresh wood density measurements on discs sampled from the felled trees (at breast height, and for a subsample of trees, every 300 cm along the main axis of the tree).
DOI: 10.5281/zenodo.6600430
title: Como Creek Colorado C-Q data

description: R code for downloading and analyzing concentration-discharge (C-Q) data from National Ecological Observatory Network (NEON) Como Creek site in Colorado. The script first downloads the data from the NEON API, removes quality flagged measurements, and averages all data to 15 minute intervals and merges discharge (Q), nitrate (NO3-N) and water quality (specific conductance-SpC and fluorescent dissolved organic matter-fDOM which is then used to estimate dissolved organic carbon-DOC). This dats is saved as a csv file, which is also included in this repo, so that this step can be bypassed. The code then analyzes the C-Q relationships of individual snowmelt and rainfall induced pulses by fitting a power function to determine whether concentrations are enriched, diluted or chemostatic. A normalized hysteresis index is also calculated for each event. Finally, the code fits a sine model to each day of data to determine the timing and amplitude of the diel signals.