cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/5ta0f-kzy78
title: O. tauri G1

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2009-12-10</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 12h in 30uM Propyzamide, 3h Propyzamide washout</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-12-10-14/rawdata/</p>RCC745_G1tovis_288.mrc,  Tilt Series (Pixel Size 0.96 nm), 755.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-12-10-14/rawdata/RCC745_G1tovis_288.mrc"
        > <i class="download icon"></i> Download </a></p>

        RCC745_G1tovis_288.rec,  Reconstruction (Pixel Size 0.96 nm), 346.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-12-10-14/3dimage_12279/RCC745_G1tovis_288.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hsp4s-h0t60
title: Hyphomonas EB session21 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-07-14</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, EB 0.02mg/ml overnight 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
  jsa2009-07-14-69_slicer8913.jpg: Hyphomonas Neptunium .  Unknown filament jsa2009-07-14-69_slicer8914.jpg: Hyphomonas Neptunium .  unknown filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-07-14-69/rawdata/</p>09jul14a_b200c_069.mrc,  Tilt Series (Pixel Size 0.632 nm), 553.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-07-14-69/rawdata/09jul14a_b200c_069.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jul14a_b200c_069_part.rec,  Reconstruction (Pixel Size 1.264 nm), 367.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-07-14-69/3dimage_8316/09jul14a_b200c_069_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1f321-37822
title: O. tauri Propyzamide release

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2010-02-12</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 15h in 30uM Propyzamide, Washout Propyzamide</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2010-02-12-9/rawdata/</p>RCC745_RELtovis_009.mrc,  Tilt Series (Pixel Size 1.26 nm), 771.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2010-02-12-9/rawdata/RCC745_RELtovis_009.mrc"
        > <i class="download icon"></i> Download </a></p>

        RCC745_RELtovis_009.rec,  Reconstruction (Pixel Size 1.26 nm), 368.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2010-02-12-9/3dimage_12359/RCC745_RELtovis_009.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ejasa-zpj82
title: O. tauri Propyzamide release

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2010-02-12</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 15h in 30uM Propyzamide, Washout Propyzamide</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2010-02-12-85/rawdata/</p>RCC745_RELtovis_092.mrc,  Tilt Series (Pixel Size 1.26 nm), 570.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2010-02-12-85/rawdata/RCC745_RELtovis_092.mrc"
        > <i class="download icon"></i> Download </a></p>

        RCC745_RELtovis_092.rec,  Reconstruction (Pixel Size 1.26 nm), 454.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2010-02-12-85/3dimage_12511/RCC745_RELtovis_092.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fw5gk-rwc28
title: O. tauri MG132 arrest

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2009-10-28</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 12h in 50uM Propyzamide, 70m in 50uM MG132</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-10-28-2/3dimage_11615/</p>RCC745_MGtovis_304.rec,  Reconstruction (Pixel Size 1.26 nm), 220.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-10-28-2/3dimage_11615/RCC745_MGtovis_304.rec"
        > <i class="download icon"></i> Download </a></p>

        RCC745_MGtovis_304.mrc,  Tilt Series (Pixel Size 1.26 nm), 687.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-10-28-2/rawdata/RCC745_MGtovis_304.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.yhznec
title: Occurrence Download

description: A dataset containing 1954 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-9.00793 42.85104,-9.00481 42.85104,-9.00481 42.96282,-9.00793 42.96282,-9.00793 42.85104))",
 "Geometry POLYGON((-9.00654 42.84135,-8.90273 42.84135,-8.90273 42.96351,-9.00654 42.96351,-9.00654 42.84135))"
 ]
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1954 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022689-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/b413c3de-4294-496e-8a18-cb48d8d1f41c
title: Data underlying the publication: Identifying small-scale gradients in sediment stability as early indicators of saltmarsh cliff initiation

description: This dataset includes all data which were collected as part of this study on how small-scale gradients in sediment characteristics can act as early indicators for saltmarsh cliff initiation, which typically proceeds marsh erosion and retreat. Data include those from three stages of testing: i) field measurements of sediment characteristics around saltmarsh edges ii) fast flow flume (FFF) measurements of sediment erodibility of samples surrounding saltmarsh edges and iii) a wave mesocosm experiment to identify whether sediment offsets proceed a saltmarsh cliff forming. . Overall, we provide insight into the role of small-scale gradients in sediment stability for driving the long-term dynamics of biogeomorphic saltmarshes, which can be used as early indicators to identify cliff-prone saltmarsh areas.
DOI: 10.4121/b413c3de-4294-496e-8a18-cb48d8d1f41c.v1
title: Data underlying the publication: Identifying small-scale gradients in sediment stability as early indicators of saltmarsh cliff initiation

description: This dataset includes all data which were collected as part of this study on how small-scale gradients in sediment characteristics can act as early indicators for saltmarsh cliff initiation, which typically proceeds marsh erosion and retreat. Data include those from three stages of testing: i) field measurements of sediment characteristics around saltmarsh edges ii) fast flow flume (FFF) measurements of sediment erodibility of samples surrounding saltmarsh edges and iii) a wave mesocosm experiment to identify whether sediment offsets proceed a saltmarsh cliff forming. . Overall, we provide insight into the role of small-scale gradients in sediment stability for driving the long-term dynamics of biogeomorphic saltmarshes, which can be used as early indicators to identify cliff-prone saltmarsh areas.
DOI: 10.15468/dl.4ggm5d
title: Occurrence Download

description: A dataset containing 921 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ptychadena oxyrhynchus, Ptychadena porosissima, Ptychadena taenioscelis, Pyxicephalus adspersus, Pyxicephalus edulis, Schismaderma carens, Sclerophrys garmani, Sclerophrys capensis, Sclerophrys gutturalis, Sclerophrys pantherina, Sclerophrys pardalis, Sclerophrys poweri, Sclerophrys pusilla, Semnodactylus wealii, Strongylopus bonaespei, Strongylopus fasciatus, Strongylopus grayii, Strongylopus springbokensis, Strongylopus wageri, Tomopterna cryptotis, Tomopterna branchi, Tomopterna delalandii, Tomopterna krugerensis, Tomopterna marmorata, Tomopterna natalensis, Tomopterna tandyi, Vandijkophrynus amatolicus, Vandijkophrynus angusticeps, Vandijkophrynus gariepensis, Vandijkophrynus robinsoni, Xenopus gilli, Xenopus laevis, Xenopus muelleri, Strongylopus merumontanus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1332 -20.158,25.5395 -23.2724,25.5395 -24.0715,30.5701 -24.0715,30.5701 -20.3186,29.6496 -19.6123,28.947 -19.4003,28.1821 -19.4609,27.6072 -19.7214,27.1332 -20.158))"
 ]
}

 The dataset includes 921 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000184-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2dgykd
title: CCDC 2218904: Experimental Crystal Structure Determination

description: Related Article: Luis Tarifa, M. Pilar del Río, Laura Asensio, Jose A. Lopez, Miguel A. Ciriano, Ana M. Geer, Cristina Tejel|2023|ACS Catalysis|13|3148|doi:10.1021/acscatal.2c05895
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dgylf
title: CCDC 2218905: Experimental Crystal Structure Determination

description: Related Article: Luis Tarifa, M. Pilar del Río, Laura Asensio, Jose A. Lopez, Miguel A. Ciriano, Ana M. Geer, Cristina Tejel|2023|ACS Catalysis|13|3148|doi:10.1021/acscatal.2c05895
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dgymg
title: CCDC 2218906: Experimental Crystal Structure Determination

description: Related Article: Luis Tarifa, M. Pilar del Río, Laura Asensio, Jose A. Lopez, Miguel A. Ciriano, Ana M. Geer, Cristina Tejel|2023|ACS Catalysis|13|3148|doi:10.1021/acscatal.2c05895
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dgynh
title: CCDC 2218907: Experimental Crystal Structure Determination

description: Related Article: Luis Tarifa, M. Pilar del Río, Laura Asensio, Jose A. Lopez, Miguel A. Ciriano, Ana M. Geer, Cristina Tejel|2023|ACS Catalysis|13|3148|doi:10.1021/acscatal.2c05895
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.21227/sd2p-dp94
title: "haptics cognition"

description: "As described in the journal, we have datasets from three conditions: a touch condition, an imagination condition, and a combined touch-and-imagination condition, for researchers to explore."
DOI: 10.25934/pr00011731
title: 02022023_112315_Feng

description: n/a
DOI: 10.7910/dvn/68xc3s
title: Canada: Topic - Question Period

description: Question Period dataset and codebook
DOI: 10.15468/dl.9rmtj5
title: Occurrence Download

description: A dataset listing the 334 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.47007 44.28828,2.42887 44.26978,2.42241 44.24114,2.43574 44.22696,2.49996 44.22406,2.52055 44.24664,2.5153 44.26602,2.4939 44.28857,2.47007 44.28828))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 334 records were derived from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000185-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3a3wej
title: Occurrence Download

description: A dataset containing 1283 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Comparettia falcata Poepp. & Endl."
 ]
}

 The dataset includes 1283 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022946-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9s773
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurium somedanum M.Laínz"
 ]
}

 The dataset includes 141 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022604-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hmtrw
title: Occurrence Download

description: A dataset containing 1708 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Betencourtia scarlatina (Mart. ex Benth.) L.P.Queiroz"
 ]
}

 The dataset includes 1708 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022605-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27304311
title: Causes and consequences of long-term defaunation in multi-species aggregations: Species traits predict freshwater mussel declines and decreases in biogeochemical storage and recycling

description: 1. One of the foremost challenges in contemporary ecology is understanding the rapid loss of animal diversity and biomass, known as defaunation. The causes and consequences of defaunation depend on species traits that regulate which species are vulnerable to particular stressors and the ecosystem-level consequences of declines.2. We used a &gt;30-year long-term monitoring dataset and a trait-based framework to identify defaunation in multi-species freshwater animal aggregations (freshwater mussels). We quantified long-term trends in mussel density, species richness, and mussel-generated ecosystem function, and tested whether these declines were associated with drought—a key driver of freshwater defaunation. Finally, we determined whether defaunation varied among mussel taxa with contrasting ecophysiological (thermal tolerance guild) and life history traits.3. Losses of mussel density were associated with biomass declines, and consequent losses of mussel-generated carbon and nutrient storage. Mussel aggregations became defaunated and lost function in rivers where drought conditions were more severe and/or frequent during the study. Unexpectedly, declines did not differ among species with different thermal tolerances—both thermally sensitive species and thermally tolerant species declined in defaunated streams. Rather, the taxa driving the declines in density and ecosystem function were those with life history traits adapted for stable hydrologic conditions (low fecundity, long lifespans, late age at maturity).4. Our finding that declines differed among species based on life history traits, but not thermal tolerance guilds, contrasted with previous studies conducted at shorter time intervals. We suggest that the ecophysiological traits that impact individual survival may be more important in governing drought-induced defaunation at shorter time scales, while life history traits that govern population recovery may be more important at longer time scales.5. The magnitude of lost biogeochemical storage and recycling associated with mussel declines was substantial when placed in the context of other studies. Given the significant role that river ecosystems play in global biogeochemical processes, freshwater defaunation may have major consequences if it continues unchecked.6. More broadly, trait-based approaches show clear promise for advancing the predictive capacity of animal ecology. The growing availability of species trait databases for animal assemblages should be leveraged to advance the field.