cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48597/fbd6-45et
title: Measurement of Potassium at Campisabalos

description: Measurement of Potassium at Campisabalos
DOI: 10.48597/fc8y-vcz7
title: Measurement of Pm25_mass at Penausende

description: Measurement of Pm25_mass at Penausende
DOI: 10.48597/frm5-xvyt
title: Measurement of Magnesium at Els Torms

description: Measurement of Magnesium at Els Torms
DOI: 10.48597/g8ku-4cbc
title: Measurement of Nitrate at Zarra

description: Measurement of Nitrate at Zarra
DOI: 10.5281/zenodo.10523744
title: Data sets for Polyplax serrata article "Highly-resolved genomes of two closely related lineages of the rodent louse Polyplax serrata with different host specificities"

description: Supplementary data for Polyplax serrata article 2023

Data included in this repository were generated and used in various genomic and phylogenetic analysis presented by the publication "Highly-resolved genomes of two closely related lineages of the louse Polyplax serrata with different host specificities"

Description of the data and file structure

Data provided for each analyzed taxa include:

-  Annotation table.

-  fasta format files for transcripts (CDS and mRNA).

-  fasta format file for genome.

-  protein fasta file.

-  gbk format file that includes the genome with its corresponding annotations.

Additionally,

- repeat families in fasta format were included for Polyplax serrata S and N lineages.

- rRNA in fasta format were included for Polyplax serrata S and N lineages, Pediculus humanus, Columbicola columbae and Brueelia nebulsa. 

Sharing/Access information

GenBank accession number of analyzed taxa:

·        Aedes Aegypti (GenBank accession no. GCF_002204515.2).

·        Brueelia nebulsa ( GenBank accession no. GCA_028293925.1).

·        Columbicola columbae (GenBank accession no. GCA_016920875.1).

·        Cimex lectularis (GenBank accession no. GCF_000648675.2).

·        Glossina morsitans (GenBank accession no. GCA_001077435.1).

·        Pediculus humanus (GenBank accession no. GCA_000006295.1).

·        Rhodnius prolixus (GenBank accession no. GCA_000181055.3).

·        Polyplax serrata S lineage (GenBank accession no. JAWJWF000000000).

·        Polyplax serrata N lineage (GenBank accession no. JAWJWE000000000).

 

Note: All the latter genomes except for the two genomes of Polyplax serrata S and N lineages, were acquired from GenBank database and were subjected to the same gene prediction and annotation workflow as P. serrata genomes to maintain methodological consistence in downstream analysis of the annotation results.

Software

- Gene prediction and annotation was performed using Funannotate v1.18.14 (https://github.com/nextgenusfs/funannotate)).

- Repeat were identified in the genomes of P. serrata S and N lineages using RepeatModeler v2.0.3.
description: Project funded by Czech Science Foundation, Grant number: 21-02532S
DOI: 10.48597/gckk-rf8t
title: Measurement of Lead at Víznar

description: Measurement of Lead at Víznar
DOI: 10.5281/zenodo.8381479
title: Data sets for Polyplax serrata article "Highly-resolved genomes of two closely related lineages of the rodent louse Polyplax serrata with different host specificities"

description: Supplementary data for Polyplax serrata article 2023

Data included in this repository were generated and used in various genomic and phylogenetic analysis presented by the publication "Highly-resolved genomes of two closely related lineages of the louse Polyplax serrata with different host specificities"

Description of the data and file structure

Data provided for each analyzed taxa include:

-  Annotation table.

-  fasta format files for transcripts (CDS and mRNA).

-  fasta format file for genome.

-  protein fasta file.

-  gbk format file that includes the genome with its corresponding annotations.

Additionally,

- repeat families in fasta format were included for Polyplax serrata S and N lineages.

- rRNA in fasta format were included for Polyplax serrata S and N lineages, Pediculus humanus, Columbicola columbae and Brueelia nebulsa. 

Sharing/Access information

GenBank accession number of analyzed taxa:

·        Aedes Aegypti (GenBank accession no. GCF_002204515.2).

·        Brueelia nebulsa ( GenBank accession no. GCA_028293925.1).

·        Columbicola columbae (GenBank accession no. GCA_016920875.1).

·        Cimex lectularis (GenBank accession no. GCF_000648675.2).

·        Glossina morsitans (GenBank accession no. GCA_001077435.1).

·        Pediculus humanus (GenBank accession no. GCA_000006295.1).

·        Rhodnius prolixus (GenBank accession no. GCA_000181055.3).

·        Polyplax serrata S lineage (GenBank accession no. JAWJWF000000000).

·        Polyplax serrata N lineage (GenBank accession no. JAWJWE000000000).

 

Note: All the latter genomes except for the two genomes of Polyplax serrata S and N lineages, were acquired from GenBank database and were subjected to the same gene prediction and annotation workflow as P. serrata genomes to maintain methodological consistence in downstream analysis of the annotation results.

Software

- Gene prediction and annotation was performed using Funannotate v1.18.14 (https://github.com/nextgenusfs/funannotate)).

- Repeat were identified in the genomes of P. serrata S and N lineages using RepeatModeler v2.0.3.
description: Project funded by Czech Science Foundation, Grant number: 21-02532S
DOI: 10.48597/h9w8-p3gu
title: Measurement of Nitrate at Barcarrota

description: Measurement of Nitrate at Barcarrota
DOI: 10.48597/hs28-4pbm
title: Measurement of Benzo_bj_fluoranthenes at Víznar

description: Measurement of Benzo_bj_fluoranthenes at Víznar
DOI: 10.48597/ktpd-jjwj
title: Measurement of Magnesium at Campisabalos

description: Measurement of Magnesium at Campisabalos
DOI: 10.48597/kyxs-4b7m
title: Measurement of Fluoranthene at Víznar

description: Measurement of Fluoranthene at Víznar
DOI: 10.48597/mtva-hxxn
title: Measurement of Potassium at Víznar

description: Measurement of Potassium at Víznar
DOI: 10.48597/nbqf-g5hp
title: Measurement of Chloride at Rickleå

description: Measurement of Chloride at Rickleå
DOI: 10.48597/nd2u-tgfp
title: Measurement of Pm25_mass at Barcarrota

description: Measurement of Pm25_mass at Barcarrota
DOI: 10.48597/nmbe-pn6f
title: Measurement of Chloride at Víznar

description: Measurement of Chloride at Víznar
DOI: 10.48597/p3vx-2pfp
title: Measurement of Benz_a_anthracene at Víznar

description: Measurement of Benz_a_anthracene at Víznar
DOI: 10.48597/pem8-webb
title: Measurement of Organic_carbon at Campisabalos

description: Measurement of Organic_carbon at Campisabalos
DOI: 10.48597/phpj-qu9n
title: Measurement of Chrysene at Víznar

description: Measurement of Chrysene at Víznar
DOI: 10.48597/ptbt-dgfr
title: Measurement of Ammonium at Víznar

description: Measurement of Ammonium at Víznar
DOI: 10.48597/qenz-cthh
title: Measurement of Calcium at Campisabalos

description: Measurement of Calcium at Campisabalos
DOI: 10.6084/m9.figshare.23583513
title: Additional file 2 of Homology-independent targeted insertion (HITI) enables guided CAR knock-in and efficient clinical scale CAR-T cell manufacturing

description: Additional file 2.
DOI: 10.48597/qf6a-xefc
title: Measurement of Ammonium at Campisabalos

description: Measurement of Ammonium at Campisabalos
DOI: 10.6084/m9.figshare.23583513.v1
title: Additional file 2 of Homology-independent targeted insertion (HITI) enables guided CAR knock-in and efficient clinical scale CAR-T cell manufacturing

description: Additional file 2.
DOI: 10.48597/qjz7-tmsy
title: Measurement of Pm25_mass at Campisabalos

description: Measurement of Pm25_mass at Campisabalos
DOI: 10.48597/qrw3-22qg
title: Measurement of Pm10_mass at Cabo de Creus

description: Measurement of Pm10_mass at Cabo de Creus
DOI: 10.48597/qx5k-fjhm
title: Measurement of Sulphate_total at Zarra

description: Measurement of Sulphate_total at Zarra
DOI: 10.48597/r86t-mdxb
title: Measurement of Chloride at Els Torms

description: Measurement of Chloride at Els Torms
DOI: 10.48597/re9u-6yt9
title: Measurement of Calcium at Els Torms

description: Measurement of Calcium at Els Torms
DOI: 10.48597/rh9r-sn25
title: Measurement of Sodium at Els Torms

description: Measurement of Sodium at Els Torms
DOI: 10.48597/rp2n-74a5
title: Measurement of Sulphate_total at Barcarrota

description: Measurement of Sulphate_total at Barcarrota
DOI: 10.48597/rqmb-yykh
title: Measurement of Acenaphthene at Víznar

description: Measurement of Acenaphthene at Víznar
DOI: 10.48597/rr8t-98qv
title: Measurement of Inden_123cd_pyrene at Víznar

description: Measurement of Inden_123cd_pyrene at Víznar
DOI: 10.48597/s5sy-d4hn
title: Measurement of Ammonium at Els Torms

description: Measurement of Ammonium at Els Torms
DOI: 10.48597/t96b-b35y
title: Measurement of Pm25_mass at Zarra

description: Measurement of Pm25_mass at Zarra
DOI: 10.48597/thrg-dbcv
title: Measurement of Calcium at Rickleå

description: Measurement of Calcium at Rickleå
DOI: 10.48597/tmge-8nek
title: Measurement of Nitrate at Els Torms

description: Measurement of Nitrate at Els Torms
DOI: 10.48597/tt7e-szpr
title: Measurement of Nitrate at Campisabalos

description: Measurement of Nitrate at Campisabalos
DOI: 10.48597/u9xd-gmm9
title: Measurement of Sodium at Campisabalos

description: Measurement of Sodium at Campisabalos
DOI: 10.48597/us4h-32rb
title: Measurement of Sulphate_total at Víznar

description: Measurement of Sulphate_total at Víznar
DOI: 10.48597/uza2-rf53
title: Measurement of Sulphate_total at Campisabalos

description: Measurement of Sulphate_total at Campisabalos
DOI: 10.6084/m9.figshare.18864937
title: Additional file 2 of Transcriptome-scale spatial gene expression in rat arcuate nucleus during puberty

description: Additional file 2: Table S1. The basic information of spatial transcriptomics data.
DOI: 10.6084/m9.figshare.18864937.v1
title: Additional file 2 of Transcriptome-scale spatial gene expression in rat arcuate nucleus during puberty

description: Additional file 2: Table S1. The basic information of spatial transcriptomics data.
DOI: 10.48597/v2wg-gxhr
title: Measurement of Magnesium at Campisabalos

description: Measurement of Magnesium at Campisabalos
DOI: 10.48597/v7je-btyk
title: Measurement of Pm10_mass at Zarra

description: Measurement of Pm10_mass at Zarra
DOI: 10.48597/vbm4-5rth
title: Measurement of Nitrate at Cabo de Creus

description: Measurement of Nitrate at Cabo de Creus
DOI: 10.48597/waqh-gmrq
title: Measurement of Precipitation_amount at Koksijde

description: Measurement of Precipitation_amount at Koksijde
DOI: 10.48597/wkwp-bgnm
title: Measurement of Precipitation_amount at Rickleå

description: Measurement of Precipitation_amount at Rickleå
DOI: 10.48597/x38u-xpt9
title: Measurement of Cadmium at Víznar

description: Measurement of Cadmium at Víznar
DOI: 10.6084/m9.figshare.18864940
title: Additional file 3 of Transcriptome-scale spatial gene expression in rat arcuate nucleus during puberty

description: Additional file 3: Table S2. Information of DEGs with p-value less than 0.01 adjusted by MAST difference test method in all 14 clusters.
DOI: 10.6084/m9.figshare.18864940.v1
title: Additional file 3 of Transcriptome-scale spatial gene expression in rat arcuate nucleus during puberty

description: Additional file 3: Table S2. Information of DEGs with p-value less than 0.01 adjusted by MAST difference test method in all 14 clusters.
DOI: 10.15468/dl.mfjsmo
title: Occurrence Download

description: A dataset containing 4936 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Afzelia africana Sm. ex Pers."
 ]
}

 The dataset includes 4936 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022164-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wcjmuq
title: Occurrence Download

description: A dataset containing 9218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "TaxonKey is Anthozoa"
 ]
}

 The dataset includes 9218 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004266-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v2eg7a
title: Occurrence Download

description: A dataset containing 840 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Danosoma fasciatum (Linnaeus, 1758)"
 ]
}

 The dataset includes 840 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292939-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqhpua
title: Occurrence Download

description: A dataset containing 16233 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Crustacea specimens of Toyama Science Museum"
 ]
}

 The dataset includes 16233 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011660-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d866ez
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Basiliscus basiliscus basiliscus",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 103 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022173-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hppthn
title: Occurrence Download

description: A dataset containing 978 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Japan",
 "TaxonKey is Taraxacum officinale Weber ex F.H.Wigg."
 ]
}

 The dataset includes 978 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024594-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqrbjw
title: Occurrence Download

description: A dataset containing 3074 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhododendron tomentosum (Stokes) Harmaja",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 3074 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002008-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etjx5y
title: Occurrence Download

description: A dataset containing 1397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Fraxinus chinensis Roxb.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1397 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022155-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lo4rpl
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Catálogo electrónico de especímenes depositados en el Herbario de la Universidad de Texas en Austin, Fase IV (Ejemplaresimagenes)",
 "TaxonKey is Pinus orizabensis (D.K.Bailey) D.K.Bailey & Hawksw."
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011662-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6u7z6n
title: Occurrence Download

description: A dataset containing 2605 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Geometry POLYGON((-78.01392 0.01923,-78.31055 -0.33783,-78.44788 -1.03546,-77.45361 -1.45294,-76.55823 -1.39801,-75.54749 -0.93109,-76.94275 0.15656,-78.01392 0.01923))",
 "StateProvince is Napo",
 "HasCoordinate is true",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 2605 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024595-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56xcm6
title: Occurrence Download

description: A dataset containing 1497 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "Geometry POLYGON((-175.12001 9.30152,-26.87999 9.30152,-26.87999 68.69848,-175.12001 68.69848,-175.12001 9.30152))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Antilocapra Ord, 1818",
 "Year 2008-2017"
 ]
}

 The dataset includes 1497 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034190-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjn477
title: Occurrence Download

description: A dataset containing 3038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2024",
 "Geometry POLYGON ((-130.7383528944533 -59.46314024951374, -130.7383528944533 32.71876227804215, -26.26729810228821 32.71876227804215, -26.26729810228821 -59.46314024951374, -130.7383528944533 -59.46314024951374))",
 "OccurrenceStatus is Present",
 "TaxonKey is Thlypopsis fulviceps Cabanis, 1851"
 ]
}

 The dataset includes 3038 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053391-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvtmhg
title: Occurrence Download

description: A dataset containing 163 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lagonosticta sanguinodorsalis Payne, 1998",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 163 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022171-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cartib
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Tropicos MO Specimen Data",
 "TaxonKey is Pinus orizabensis (D.K.Bailey) D.K.Bailey & Hawksw."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011663-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55bd52
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Dioon stevensonii Nic.-Mor. & Vovides",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019068-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sg3vs2
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Marcetia nervulosa Markgr."
 ]
}

 The dataset includes 16 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002012-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbdifd
title: Occurrence Download

description: A dataset containing 2571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Arctocephalus pusillus (Schreber, 1775)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2571 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022176-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3pfwv
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 2010-2018",
 "HasCoordinate is true",
 "TaxonKey is Xenosaurus grandis (Gray, 1856)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011664-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tds8ef
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rorippa palustris Greene, 1894",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0321241-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fouodo
title: Occurrence Download

description: A dataset containing 4973 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gleditsia triacanthos L."
 ]
}

 The dataset includes 4973 records from 188 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011728-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7ao96
title: Occurrence Download

description: A dataset containing 349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lupinus mutabilis Sweet",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 349 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022179-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rkt66d
title: Occurrence Download

description: A dataset containing 5808 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "TaxonKey is Streptopelia turtur (Linnaeus, 1758)"
 ]
}

 The dataset includes 5808 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011665-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.