cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dquwja
title: Occurrence Download

description: A dataset containing 20234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is Europe",
 "CoordinateUncertaintyInMeters is less than or equal to 1000.0",
 "License is one of (CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Platanthera chlorantha (Custer) Rchb.",
 "Year 1925-2025"
 ]
}

 The dataset includes 20234 records from 235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010865-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jtukuu
title: Occurrence Download

description: A dataset listing the 16067 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-433.66767 4.12078,-433.66097 3.9957,-433.58056 3.92199,-433.41081 3.81031,-433.18298 3.77681,-432.85464 3.82595,-432.65585 3.84158,-432.35878 3.87955,-432.03937 4.03814,-431.99693 4.18556,-432.0349 4.33521,-432.09298 4.40668,-432.22923 4.40222,-432.2873 4.36201,-432.35207 4.295,-432.42802 4.31511,-432.51513 4.29277,-432.5665 4.30394,-432.67148 4.29947,-432.73179 4.2749,-432.87251 4.2481,-433.01546 4.2481,-433.15171 4.21236,-433.47558 4.18109,-433.5895 4.21236,-433.66767 4.16099,-433.66767 4.12078))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 16067 records were derived from 402 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010851-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.65rema
title: Occurrence Download

description: A dataset containing 3141290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (United States of America, Canada)",
 "Month is one of (May, April, June)",
 "OccurrenceStatus is Present",
 "TaxonKey is Troglodytes aedon Vieillot, 1809",
 "Year 1999-2025"
 ]
}

 The dataset includes 3141290 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010850-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17394756
title: ERA5_PRESSURE_LEVEL

description: readme
DOI: 10.5281/zenodo.10798987
title: SMAdd-seq: Probing chromatin accessibility with small molecule DNA intercalation and nanopore sequencing

description: Studies of in vivo chromatin organization have relied on the accessibility of the underlying DNA to nucleases or methyltransferases, which is limited by their requirement for purified nuclei and enzymatic treatment. Here, we introduce a nanopore-based sequencing technique called Small-Molecule Adduct sequencing (SMAdd-seq), where we profile chromatin accessibility by treating nuclei or intact cells with a small molecule, angelicin. Angelicin reacts with thymine bases in linker DNA not bound to core nucleosomes after UV light exposure, thereby labeling accessible DNA regions. By applying SMAdd-seq in Saccharomyces cerevisiae, we demonstrate that angelicin-modified DNA can be detected by its distinct nanopore current signals. To systematically identify angelicin modifications and analyze chromatin structure, we developed a neural network model, NEural network for mapping MOdifications in nanopore long-reads (NEMO). NEMO accurately called expected nucleosome occupancy patterns near transcription start sites at both bulk and single-molecule levels. We observe heterogeneity in chromatin structure and identify clusters of single-molecule reads with varying configurations at specific yeast loci. Furthermore, SMAdd-seq performs equivalently on purified yeast nuclei and intact cells, indicating the promise of this method for in vivo chromatin labeling on long single molecules to measure native chromatin dynamics and heterogeneity.
DOI: 10.5281/zenodo.15692384
title: SMAdd-seq: Probing chromatin accessibility with small molecule DNA intercalation and nanopore sequencing

description: Studies of in vivo chromatin organization have relied on the accessibility of the underlying DNA to nucleases or methyltransferases, which is limited by their requirement for purified nuclei and enzymatic treatment. Here, we introduce a nanopore-based sequencing technique called Small-Molecule Adduct sequencing (SMAdd-seq), where we profile chromatin accessibility by treating nuclei or intact cells with a small molecule, angelicin. Angelicin reacts with thymine bases in linker DNA not bound to core nucleosomes after UV light exposure, thereby labeling accessible DNA regions. By applying SMAdd-seq in Saccharomyces cerevisiae, we demonstrate that angelicin-modified DNA can be detected by its distinct nanopore current signals. To systematically identify angelicin modifications and analyze chromatin structure, we developed a neural network model, NEural network for mapping MOdifications in nanopore long-reads (NEMO). NEMO accurately called expected nucleosome occupancy patterns near transcription start sites at both bulk and single-molecule levels. We observe heterogeneity in chromatin structure and identify clusters of single-molecule reads with varying configurations at specific yeast loci. Furthermore, SMAdd-seq performs equivalently on purified yeast nuclei and intact cells, indicating the promise of this method for in vivo chromatin labeling on long single molecules to measure native chromatin dynamics and heterogeneity.
DOI: 10.5281/zenodo.14060665
title: Laptop Ratings and Specifications Extracted from PCBox

description: This dataset contains detailed information on 100 laptops extracted from the online store PCBox using web scraping techniques. The data includes the product name, price, category, brand, average rating, number of reviews, as well as the highest and lowest ratings with associated review comments. This information enables analysis and comparison of different laptop models based on price, popularity, and user ratings.
DOI: 10.5281/zenodo.14060666
title: Laptop Ratings and Specifications Extracted from PCBox

description: This dataset contains detailed information on 100 laptops extracted from the online store PCBox using web scraping techniques. The data includes the product name, price, category, brand, average rating, number of reviews, as well as the highest and lowest ratings with associated review comments. This information enables analysis and comparison of different laptop models based on price, popularity, and user ratings.
DOI: 10.6084/m9.figshare.27642501
title: Microbial community composition data from silkworm feces-earthworm-soil system in Guangxi revealed by 16S rRNA sequencing

description: This dataset contains the filtered and taxonomically annotated ASV table (in BIOM format) generated from 16S rDNA sequencing of samples including original soil (OSD), silkworm feces (SF), earthworm gut samples at different densities (DG50, DG80, DG110), and treated soil samples (TSD50, TSD80, TSD110) from an experiment investigating the effects of silkworm feces and earthworms on soil microbial communities in Guangxi, China.
DOI: 10.6084/m9.figshare.27642501.v1
title: Microbial community composition data from silkworm feces-earthworm-soil system in Guangxi revealed by 16S rRNA sequencing

description: This dataset contains the filtered and taxonomically annotated ASV table (in BIOM format) generated from 16S rDNA sequencing of samples including original soil (OSD), silkworm feces (SF), earthworm gut samples at different densities (DG50, DG80, DG110), and treated soil samples (TSD50, TSD80, TSD110) from an experiment investigating the effects of silkworm feces and earthworms on soil microbial communities in Guangxi, China.
DOI: 10.15468/dl.kajvc5
title: Occurrence Download

description: A dataset containing 3715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mammalia)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-73.7876411863387 3.23930625799224,-72.2797561690444 3.23930625799224,-72.2797561690444 3.81132212072394,-73.7876411863387 3.81132212072394,-73.7876411863387 3.23930625799224))"
 ]
}

 The dataset includes 3715 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005184-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avsgab
title: Occurrence Download

description: A dataset containing 773 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Canis lupus Linnaeus, 1758",
 "Year 2011-2024"
 ]
}

 The dataset includes 773 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005185-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nvg24
title: Occurrence Download

description: A dataset containing 5048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Cerdocyon thous (Linnaeus, 1766), Mazama gouazoubira G.Fischer, Eira barbara (Linnaeus, 1758), Lycalopex gymnocercus (G.Fischer, 1814), Procyon cancrivorus G, Didelphis albiventris Lund, 1840, Pecari tajacu (Linnaeus, 1758))",
 "Year 2000-2024"
 ]
}

 The dataset includes 5048 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005186-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vu58t2
title: Occurrence Download

description: A dataset containing 19027 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-0.11377 42.60174,0.20414 42.60174,0.20414 42.69195,-0.11377 42.69195,-0.11377 42.60174))",
 "Geometry POLYGON((-0.40098 42.63559,-0.19727 42.63559,-0.19727 42.7984,-0.40098 42.7984,-0.40098 42.63559))"
 ]
 },
 "HasGeospatialIssue is false",
 "Month is one of (May, June)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 19027 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005188-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g22z9s
title: Occurrence Download

description: A dataset containing 3687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Canis lupus Linnaeus, 1758"
 ]
}

 The dataset includes 3687 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005190-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9855884
title: Balochi Language to English Translation Dataset
DOI: 10.15468/dl.fnyfsh
title: Occurrence Download

description: A dataset containing 144412 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-0.11377 42.60174,0.20414 42.60174,0.20414 42.69195,-0.11377 42.69195,-0.11377 42.60174))",
 "Geometry POLYGON((-0.40098 42.63559,-0.19727 42.63559,-0.19727 42.7984,-0.40098 42.7984,-0.40098 42.63559))"
 ]
 },
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 144412 records from 231 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005187-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26324203
title: Comparison of vital parameters measured by a Ballistocardiography device Dozee and a Philips Bedside Monitor

description: This study looked into the reliability of BCG devices by comparing basic vital parameters such as heart rate, respiratory rate, systolic blood pressure, diastolic blood pressure, mean arterial pressure and temperature as measured by a ballistocardiography device, with the same parameters simultaneously measured by standard bedside monitors.This was a two-month prospective observational study involving adult ICU patients. Patients’ vital parameters were recorded simultaneously at four-hourly intervals using the Dozee BCG and Philips IntelliVue MP20 monitors. Readings from the BCG were analysed to assess deviation from the benchmark bedside monitor readings. A total of 121 patients were included and about 900 - 1000 readings of each parameter were obtained.<br>
DOI: 10.15468/dl.9fwrju
title: Occurrence Download

description: A dataset containing 4816 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Rottnest Island lakes, swamps and coastal bird counts December 1981 to September 2007"
 ]
}

 The dataset includes 4816 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005192-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n5mgtm
title: Occurrence Download

description: A dataset containing 3715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mammalia)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-73.7876411863387 3.23930625799224,-72.2797561690444 3.23930625799224,-72.2797561690444 3.81132212072394,-73.7876411863387 3.81132212072394,-73.7876411863387 3.23930625799224))"
 ]
}

 The dataset includes 3715 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005194-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4wp4g
title: Occurrence Download

description: A dataset containing 5535 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "PublishingOrg is one of (47380c8a-0edd-4036-b1bc-d852cba8232f)"
 ]
}

 The dataset includes 5535 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005195-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebw2nb
title: Occurrence Download

description: A dataset containing 3715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mammalia)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-73.7876411863387 3.23930625799224,-72.2797561690444 3.23930625799224,-72.2797561690444 3.81132212072394,-73.7876411863387 3.81132212072394,-73.7876411863387 3.23930625799224))"
 ]
}

 The dataset includes 3715 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005197-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bq444a
title: Occurrence Download

description: A dataset containing 3715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mammalia)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-73.7876411863387 3.23930625799224,-72.2797561690444 3.23930625799224,-72.2797561690444 3.81132212072394,-73.7876411863387 3.81132212072394,-73.7876411863387 3.23930625799224))"
 ]
}

 The dataset includes 3715 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005198-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8srsvy
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera uncia (Schreber, 1775)"
 ]
}

 The dataset includes 73 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005201-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrqzc7
title: Occurrence Download

description: A dataset containing 49315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Animalia",
 "Year 2024-2024"
 ]
}

 The dataset includes 49315 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005199-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6n2qp
title: Occurrence Download

description: A dataset containing 3715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mammalia)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-73.7876411863387 3.23930625799224,-72.2797561690444 3.23930625799224,-72.2797561690444 3.81132212072394,-73.7876411863387 3.81132212072394,-73.7876411863387 3.23930625799224))"
 ]
}

 The dataset includes 3715 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005202-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7875079
title: ECCOLA

description: ECCOLA file describing how to use the method
DOI: 10.5281/zenodo.7875078
title: ECCOLA

description: ECCOLA file describing how to use the method
DOI: 10.15468/dl.fb9mdq
title: Occurrence Download

description: A dataset containing 3715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mammalia)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-73.7876411863387 3.23930625799224,-72.2797561690444 3.23930625799224,-72.2797561690444 3.81132212072394,-73.7876411863387 3.81132212072394,-73.7876411863387 3.23930625799224))"
 ]
}

 The dataset includes 3715 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005203-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14060701
title: Expression vectors from "Description of a novel extremophile green algae, Chlamydomonas pacifica, and its potential as a biotechnology host."

description: Cytosolic vectors for Chlamydomonas reinhardtii

pAH04 mCherry (5536 bp) (Molino et al., 2018)





AmpR (Ampicillin Resistance):



Positioned at approximately 4000 bp, this gene confers resistance to ampicillin, enabling bacterial selection.





Amp Promoter:



Regulates the expression of the AmpR gene, facilitating its transcription and subsequent resistance to ampicillin.





f1 ori:



Positioned near 5000 bp, this origin of replication (ori) facilitates plasmid  replication in bacterial cells, ensuring propagation of the plasmid in E. coli.





PAR1 - HSP70 Promoter + RBCS2 Promoter:



A dual-promoter system that combines the heat-shock protein 70 (HSP70) and ribulose bisphosphate carboxylase small subunit 2 (RBCS2) promoters, providing strong and constitutive expression of downstream genes in Chlamydomonas.





mCherry:



Encodes the mCherry fluorescent protein, a red fluorescent marker commonly used for visualizing gene expression in vivo.





Ble (Bleomycin Resistance):



Provides resistance to bleomycin





Intron and UTRs (rbcS2):



Includes untranslated regions (UTRs) and introns from the rbcS2 gene, enhancing gene expression stability and processing in Chlamydomonas reinhardtii.





XbaI (93 bp) and KpnI (2750 bp):



These are key restriction enzyme sites used for cloning and linearization of the plasmid.

 

Secretion vectors for Chlamydomonas pacifica

pJPSHx1_PHL7 (5879 bp) (Molino, Oliver, et al., 2024)





AmpR (Ampicillin Resistance):



Enables bacterial selection by conferring resistance to ampicillin.





Amp Promoter:



Drives the transcription of the AmpR gene, allowing for the maintenance of plasmids in ampicillin-containing media.





P_TUBA2 Promoter:



Promoter from the tubulin alpha-2 gene from C. pacifica that controls expression of downstream genes, including PHL7, in eukaryotic cells.





T_TUBA2



Terminator region of tubulin alpha-2 gene from C. pacifica





PHL7:



Encodes the PHL7 enzyme, a plastic-degrading enzyme, important for applications in biodegradation and recycling.





F2A Peptide:



A viral peptide sequence that allows for the co-expression and separation of proteins from a single mRNA transcript.





SP7 (Signal Peptide 7):



Directs the PHL7 protein to the secretory pathway for export from the cell.





Step Hygro aph7'' (Hygromycin Resistance):



Provides resistance to hygromycin, facilitating selection of transformed eukaryotic cells.





XbaI (56 bp) and KpnI (3056 bp):



These are key restriction enzyme sites used for cloning and linearization of the plasmid.