cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14889429.v1
title: Additional file 4 of A novel DNA methylation signature is associated with androgen receptor activity and patient prognosis in bone metastatic prostate cancer

description: Additional file 4: Table S1. Differetially methylated CpGs in promoter regions of genes in primary prostate tumor tissue (T) compared to adjacent non-malignant prostate tissue (N), their correlations to corresponding gene expression levels, and the fold change in gene expression levels between sample groups.
DOI: 10.6084/m9.figshare.14889354.v1
title: Additional file 2 of Defining the resilience of the human salivary microbiota by a 520-day longitudinal study in a confined environment: the Mars500 mission

description: Additional file 1.
DOI: 10.6084/m9.figshare.14889349.v1
title: Additional file 1 of Mortality beyond emergency threshold in a silent crisis– results from a population-based mortality survey in Ouaka prefecture, Central African Republic, 2020

description: Additional file 1 Survey questionnaire in XML format, Retrospective mortality survey, Ouaka, CAR, 2020.
DOI: 10.6084/m9.figshare.14890656.v1
title: Trinity.fasta

description: Elucidation of the core betalain biosynthesis pathway in <i>Amaranthus tricolor</i>
DOI: 10.6084/m9.figshare.14890656
title: Trinity.fasta

description: Elucidation of the core betalain biosynthesis pathway in <i>Amaranthus tricolor</i>
DOI: 10.6084/m9.figshare.14889282.v1
title: Additional file 2 of Combined antibiotic stewardship and infection control measures to contain the spread of linezolid-resistant Staphylococcus epidermidis in an intensive care unit

description: Additional file 2: Table S1. List of core genome genes used for the ad hoc S. epidermidis cgMLST scheme. Locus tags designations were taken from the reference strain ATCC12228 (GenBank acc. no. NC_004461).
DOI: 10.6084/m9.figshare.14889954
title: Additional file 2 of Contemporary procedure characteristics and outcomes of accessory atrioventricular pathway ablations in an integrated community-based health care system using a tiered approach

description: Additional file 2. Cost of Supplies for EP Cases KP 2020. The spreadsheet shows the vendors, part numbers, and cost of disposable supplies in 2021 US dollars.
DOI: 10.5281/zenodo.5051433
title: Atmospheric Ammonia (NH3) total columns from the FY-4A Geostationary Interferometric Infrared Sounder (GIIRS)

description: This dataset includes the ammonia (NH3) total columns (in molecules cm<sup>-2</sup>) obtained from the FY-4A Geostationary Interferometric Infrared Sounder (GIIRS) satellite observations between November 2019 and October 2020. It also includes a an NH3 uncertainty estimate and a cloud flag. Data has been set to NaN when clouds are detected or in the case of poor measurement sensitivity. Description of the product and retrieval method can be found in Clarisse et al. (2021).
description: Corrects a bug in datetime field of v1.
DOI: 10.5281/zenodo.4540023
title: Atmospheric Ammonia (NH3) total columns from the FY-4A Geostationary Interferometric Infrared Sounder (GIIRS)

description: This dataset includes the ammonia (NH3) total columns (in molecules cm<sup>-2</sup>) obtained from the FY-4A Geostationary Interferometric Infrared Sounder (GIIRS) satellite observations between November 2019 and October 2020. It also includes a an NH3 uncertainty estimate and a cloud flag. Data has been set to NaN when clouds are detected or in the case of poor measurement sensitivity. Description of the product and retrieval method can be found in Clarisse et al. (2021).
description: Corrects a bug in datetime field of v1.
DOI: 10.6084/m9.figshare.14889870
title: Additional file 2 of Comparative transcriptome analysis reveals distinct gene expression profiles in Brachypodium distachyon infected by two fungal pathogens

description: Additional file 2: Table S1. Sequencing metrics of the RNA-seq libraries. Table S2. Differentially expressed genes of Brachypodium highly specific to F. graminearum or M. oryzae infection. Table S3. Metabolic pathway enrichment analysis on Brachypodium infected by F. graminearum or M. oryzae. Table S4. Differentially expressed RLK genes of Brachypodium during the infection by F. graminearum or M. oryzae. Table S5. Differentially expressed secondary metabolism genes of Brachypodium during the infection by F. graminearum or M. oryzae
DOI: 10.6084/m9.figshare.14889742
title: Additional file 8 of A systems pharmacology approach based on oncogenic signalling pathways to determine the mechanisms of action of natural products in breast cancer from transcriptome data

description: Additional file 8: Supplementary Table 5. Enriched pathways in up- and down-regulated subnetworks. FDR
DOI: 10.6084/m9.figshare.14889739
title: Additional file 7 of A systems pharmacology approach based on oncogenic signalling pathways to determine the mechanisms of action of natural products in breast cancer from transcriptome data

description: Additional file 7: Supplementary Table 4. Pathways enriched in whole subnetworks. FDR
DOI: 10.6084/m9.figshare.14889736
title: Additional file 6 of A systems pharmacology approach based on oncogenic signalling pathways to determine the mechanisms of action of natural products in breast cancer from transcriptome data

description: Additional file 6: Supplementary Table 3. Results of subnetwork betweenness- and degree centrality analysis.
DOI: 10.6084/m9.figshare.14889705
title: Additional file 1 of Integration of enzyme constraints in a genome-scale metabolic model of Aspergillus niger improves phenotype predictions

description: Additional file 1. The enzyme-constrained GSMM of Aspergillus niger (eciJB1325)
DOI: 10.6084/m9.figshare.14889669
title: Additional file 5 of Combined prenatal Lactobacillus reuteri and ω-3 supplementation synergistically modulates DNA methylation in neonatal T helper cells

description: Additional file 5. Table S5. Table of pathways obtained from pathway enrichment analyses on DMCs from the LP vs. PP comparison. Analyses were conducted using clusterProfiler R package and the KEGG PATHWAY database. Pathways with an adjusted p-value of 0.1 or lower were considered significantly relevant.
DOI: 10.6084/m9.figshare.14889666
title: Additional file 4 of Combined prenatal Lactobacillus reuteri and ω-3 supplementation synergistically modulates DNA methylation in neonatal T helper cells

description: Additional file 4. Table S4. Table of pathways obtained from pathway enrichment analyses on DMCs from the Lω vs. PP comparison. Analyses were conducted using clusterProfiler R package and the KEGG PATHWAY database. Pathways with an adjusted p-value of 0.1 or lower were considered significantly relevant.
DOI: 10.6084/m9.figshare.14889661
title: Additional file 2 of Molecular diagnostics helps to identify distinct subgroups of spinal astrocytomas

description: Additional file 2. Detailed results of histological assessment and molecular analysis.
DOI: 10.6084/m9.figshare.14889660
title: Additional file 2 of Combined prenatal Lactobacillus reuteri and ω-3 supplementation synergistically modulates DNA methylation in neonatal T helper cells

description: Additional file 2. Table S2. Table of differentially methylated genes (DMGs) with corresponding direction of methylation from the three treatment comparisons (Lω, LP and Pω). DMGs were defined as genes with at least one DMC, and the direction of methylation depended on the direction of methylation for all DMCs in the gene. Hypomethylation is defined as &gt; -5% mean methylation difference (MMD), hypermethylation as &gt; +5% MMD and mixed methylation genes contained DMCs of both directions. L – Lactobacillus reuteri, ω – ω-3 fatty acids, P – placebo.
DOI: 10.6084/m9.figshare.14889657
title: Additional file 1 of Combined prenatal Lactobacillus reuteri and ω-3 supplementation synergistically modulates DNA methylation in neonatal T helper cells

description: Additional file 1. Table S1. Table of extracted differentially methylated CpGs (DMCs) with corresponding mean methylation difference (MMD) from the three treatment comparisons (Lω, LP and Pω vs. PP, respectively). DMCs were defined as having a MMD of &gt; ±5% along with an FDR-corrected p-value of &lt;0.1. L – Lactobacillus reuteri, ω – ω-3 fatty acids, P – placebo.
DOI: 10.6084/m9.figshare.14889621
title: Additional file 4 of Upregulated CD58 is associated with clinicopathological characteristics and poor prognosis of patients with pancreatic ductal adenocarcinoma

description: Additional file 4: Table S2. CD58 functional enrichment analysis and KEGG pathway analysis.
DOI: 10.6084/m9.figshare.14889618
title: Additional file 3 of Upregulated CD58 is associated with clinicopathological characteristics and poor prognosis of patients with pancreatic ductal adenocarcinoma

description: Additional file 3: Table S1. Genes positively and negatively correlated with CD58 expression.
DOI: 10.6084/m9.figshare.14889583
title: Additional file 3 of Spatial clustering and genetic diversity of Mycobacterium tuberculosis isolate among pulmonary tuberculosis suspected patients, Arsi Zone, Ethiopia

description: Additional file 3. Table S2. Information of MIRU-VNTR characterized isolates with country of origin, distrcits of each patient, name and order of each locus.
DOI: 10.6084/m9.figshare.14889520
title: Additional file 8 of Embryonic thermal manipulation impacts the postnatal transcriptome response of heat-challenged Japanese quails

description: Additional file 8.
DOI: 10.6084/m9.figshare.14889517
title: Additional file 7 of Embryonic thermal manipulation impacts the postnatal transcriptome response of heat-challenged Japanese quails

description: Additional file 7.
DOI: 10.6084/m9.figshare.14889505
title: Additional file 3 of Embryonic thermal manipulation impacts the postnatal transcriptome response of heat-challenged Japanese quails

description: Additional file 3.
DOI: 10.6084/m9.figshare.14889502
title: Additional file 2 of Embryonic thermal manipulation impacts the postnatal transcriptome response of heat-challenged Japanese quails

description: Additional file 2.
DOI: 10.6084/m9.figshare.14889499
title: Additional file 1 of Embryonic thermal manipulation impacts the postnatal transcriptome response of heat-challenged Japanese quails

description: Additional file 1.
DOI: 10.6084/m9.figshare.14889438
title: Additional file 7 of A novel DNA methylation signature is associated with androgen receptor activity and patient prognosis in bone metastatic prostate cancer

description: Additional file 7: Table S4. CpG sites of the AR gene shown in Figure 3A.
DOI: 10.6084/m9.figshare.14889435
title: Additional file 6 of A novel DNA methylation signature is associated with androgen receptor activity and patient prognosis in bone metastatic prostate cancer

description: Additional file 6: Table S3. Differetially methylated CpGs in promoter regions of genes in bone metastases (M) compared to localized prostate tumors (T), their correlations to corresponding gene expression levels, and the fold change in gene expression levels between sample groups.
DOI: 10.6084/m9.figshare.14889429
title: Additional file 4 of A novel DNA methylation signature is associated with androgen receptor activity and patient prognosis in bone metastatic prostate cancer

description: Additional file 4: Table S1. Differetially methylated CpGs in promoter regions of genes in primary prostate tumor tissue (T) compared to adjacent non-malignant prostate tissue (N), their correlations to corresponding gene expression levels, and the fold change in gene expression levels between sample groups.
DOI: 10.15151/esrf-es-452641547
title: Scanning and In-situ MLL Development for X-ray Nanodiffraction on Thin Film, Space and Additively Manufactured Applications
DOI: 10.6084/m9.figshare.14889354
title: Additional file 2 of Defining the resilience of the human salivary microbiota by a 520-day longitudinal study in a confined environment: the Mars500 mission

description: Additional file 1.
DOI: 10.6084/m9.figshare.14889349
title: Additional file 1 of Mortality beyond emergency threshold in a silent crisis– results from a population-based mortality survey in Ouaka prefecture, Central African Republic, 2020

description: Additional file 1 Survey questionnaire in XML format, Retrospective mortality survey, Ouaka, CAR, 2020.
DOI: 10.6084/m9.figshare.14889282
title: Additional file 2 of Combined antibiotic stewardship and infection control measures to contain the spread of linezolid-resistant Staphylococcus epidermidis in an intensive care unit

description: Additional file 2: Table S1. List of core genome genes used for the ad hoc S. epidermidis cgMLST scheme. Locus tags designations were taken from the reference strain ATCC12228 (GenBank acc. no. NC_004461).
DOI: 10.6084/m9.figshare.14890977.v1
title: Serological and molecular epidemiology of FMDV.docx

description: These are ELSIA OD values tested from blood samples collected from cattle and goats in Eastern Province of Rwanda. The assay was to detect seroprevalence of Foot-and-Mouth Disease Virus by differentiating immune response resulting from vaccination and infection, a technique also known as DIVA
DOI: 10.25934/00003504.0
title: Available IPD datapackage for study 'Effect of Inhalation of Tiotropium Once Daily 18 Mcg Versus Salmeterol Twice Daily 50 Mcg on Time to First Exacerbation in COPD Patients (a Randomised, Double-blind, Double-dummy, Parallel Group, One-year Study).'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00003504.1
title: IPD datapackage for study 'Effect of Inhalation of Tiotropium Once Daily 18 Mcg Versus Salmeterol Twice Daily 50 Mcg on Time to First Exacerbation in COPD Patients (a Randomised, Double-blind, Double-dummy, Parallel Group, One-year Study).' and research request: 'Heterogeneity in relative treatment efficacy by age, sex, socioeconomic status and comorbidity (McAllister)'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.14889505.v1
title: Additional file 3 of Embryonic thermal manipulation impacts the postnatal transcriptome response of heat-challenged Japanese quails

description: Additional file 3.
DOI: 10.6084/m9.figshare.11603979.v1
title: Recovery of rare earth elements from acid mine drainage by ion exchange

description: The current work addresses the study of the recovery of rare earth elements (REE) from acid mine water by using cationic exchange resin. The acid water was obtained from a closed uranium mine in Brazil. Ion exchange experiments were carried out in batch with three different resins at 25 ± 0.5°C and pH values 1.4, 2.4 and 3.4 (natural). Data were adjusted to the Langmuir equation in order to calculate the maximum loading capacity (q<sub>max</sub>) of the resins. The results of q<sub>max</sub> for individual REE revealed that the resins present higher loading for La in detriment to the other REE. The Dowex 50WX8 and Lewatit MDS 200 H resins demonstrated favourable sorption profiles to REE, evidenced by values of equilibrium factor (R<sub>L</sub>) and higher values of the Langmuir constants (b). The separation factors (αHREELREE) indicates that resins are more selective for light REE at all pH studied. The selectivity of the resins for the REE can be described as light REE &gt; heavy REE. The pH 1.4 and 3.4 are more favourable for the recovery of REE.
DOI: 10.6084/m9.figshare.11603979
title: Recovery of rare earth elements from acid mine drainage by ion exchange

description: The current work addresses the study of the recovery of rare earth elements (REE) from acid mine water by using cationic exchange resin. The acid water was obtained from a closed uranium mine in Brazil. Ion exchange experiments were carried out in batch with three different resins at 25 ± 0.5°C and pH values 1.4, 2.4 and 3.4 (natural). Data were adjusted to the Langmuir equation in order to calculate the maximum loading capacity (q<sub>max</sub>) of the resins. The results of q<sub>max</sub> for individual REE revealed that the resins present higher loading for La in detriment to the other REE. The Dowex 50WX8 and Lewatit MDS 200 H resins demonstrated favourable sorption profiles to REE, evidenced by values of equilibrium factor (R<sub>L</sub>) and higher values of the Langmuir constants (b). The separation factors (αHREELREE) indicates that resins are more selective for light REE at all pH studied. The selectivity of the resins for the REE can be described as light REE &gt; heavy REE. The pH 1.4 and 3.4 are more favourable for the recovery of REE.
DOI: 10.25934/00003542.0
title: Available IPD datapackage for study 'Randomised, Double-blind, Placebo-controlled, Parallel Group Study to Assess the Efficacy and Safety of 48 Weeks of Once Daily Treatment of Orally Inhaled BI 1744 CL (5 mcg [2 Actuations of 2.5 mcg] and 10 mcg [2 Actuations of 5 mcg]) Delivered by the Respimat® Inhaler, in Patients With Chronic Obstructive Pulmonary Disease (COPD'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00003542.1
title: IPD datapackage for study 'Randomised, Double-blind, Placebo-controlled, Parallel Group Study to Assess the Efficacy and Safety of 48 Weeks of Once Daily Treatment of Orally Inhaled BI 1744 CL (5 mcg [2 Actuations of 2.5 mcg] and 10 mcg [2 Actuations of 5 mcg]) Delivered by the Respimat® Inhaler, in Patients With Chronic Obstructive Pulmonary Disease (COPD' and research request: 'Heterogeneity in relative treatment efficacy by age, sex, socioeconomic status and comorbidity (McAllister)'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.14891259.v1
title: Supplementary Table 1: from Museum genomics reveals the Xerces blue butterfly (<i>Glaucopsyche xerces</i>) was a distinct species driven to extinction

description: Estimates of average evolutionary divergence over sequence pairs within and between groups
DOI: 10.6084/m9.figshare.14891271
title: Supplementary Table 1: from Museum genomics reveals the Xerces blue butterfly (<i>Glaucopsyche xerces</i>) was a distinct species driven to extinction

description: Marker region mapping and assembly
DOI: 10.6084/m9.figshare.14891271.v1
title: Supplementary Table 1: from Museum genomics reveals the Xerces blue butterfly (<i>Glaucopsyche xerces</i>) was a distinct species driven to extinction

description: Marker region mapping and assembly
DOI: 10.6084/m9.figshare.14891259
title: Supplementary Table 1: from Museum genomics reveals the Xerces blue butterfly (<i>Glaucopsyche xerces</i>) was a distinct species driven to extinction

description: Estimates of average evolutionary divergence over sequence pairs within and between groups
DOI: 10.6084/m9.figshare.14891283.v1
title: Supplementary Table 2: from Museum genomics reveals the Xerces blue butterfly (<i>Glaucopsyche xerces</i>) was a distinct species driven to extinction

description: Overview of Sequence Data
DOI: 10.6084/m9.figshare.14891283
title: Supplementary Table 2: from Museum genomics reveals the Xerces blue butterfly (<i>Glaucopsyche xerces</i>) was a distinct species driven to extinction

description: Overview of Sequence Data
DOI: 10.25934/00003544.0
title: Available IPD datapackage for study 'A Randomised, Double-blind, Double-dummy, Placebo-controlled, Parallel Group Study to Assess the Efficacy and Safety of 48 Weeks of Once Daily Treatment of Orally Inhaled BI 1744 CL (5 µg [2 Actuations of 2.5 ug] and 10 ug [2 Actuations of 5 ug]) Delivered by the Respimat® Inhaler, and 48 Weeks of Twice Daily Foradil® (12 µg) Delivered by the Aerolizer® Inhaler, in Patients With Chronic Obstructive Pulmonary Disease (COPD)'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00003544.1
title: IPD datapackage for study 'A Randomised, Double-blind, Double-dummy, Placebo-controlled, Parallel Group Study to Assess the Efficacy and Safety of 48 Weeks of Once Daily Treatment of Orally Inhaled BI 1744 CL (5 µg [2 Actuations of 2.5 ug] and 10 ug [2 Actuations of 5 ug]) Delivered by the Respimat® Inhaler, and 48 Weeks of Twice Daily Foradil® (12 µg) Delivered by the Aerolizer® Inhaler, in Patients With Chronic Obstructive Pulmonary Disease (COPD)' and research request: 'Heterogeneity in relative treatment efficacy by age, sex, socioeconomic status and comorbidity (McAllister)'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00003611.0
title: Available IPD datapackage for study 'A Phase III, Randomised, Double-blind, Placebo-controlled, Parallel Group, Efficacy and Safety Study of BI 10773 (10 mg and 25 mg Administered Once Daily) as Add on to Pre-existing Antidiabetic Therapy Over 52 Weeks in Patients With Type 2 Diabetes Mellitus and Renal Impairment and Insufficient Glycaemic Control'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.