cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19544212
title: Spotted Owl Neutrality Tests

description: The median of Tajima’s D, Fu’s F and Fu and Li’s D* neutrality tests under assumption of constant population size from 10,000 coalescent simulations for mtDNA (control region), nDNA (RAG1) and combined analysis of mtDNA and nDNA (combined). Statistically significant results are shown in bold. A negative value for Tajma’s D and Fu’s F indicates a population expansion. For the California spotted owl the mtDNA and combined gene analyses showed significant evidence of a population expansion for all tests; however, the nDNA was only signficiant for an expansion for the Fu's F test. For the northern spotted owl the mtDNA and combined gene analyses showed significant evidence of a population expansion for all tests; however, the nDNA was not significant. For Mexican spotted owl the mtDNA was siginificant for a population expansion for all test except Tajima's D. The mtDNA gene sequences for Mexican spotted owl were accessed from GenBank and published in Barrowclough et al, 2006. The nDNA tests most likely did not reflect any population expansions or declines because of the slow mutation rate for RAG1.
DOI: 10.6084/m9.figshare.19544212.v1
title: Spotted Owl Neutrality Tests

description: The median of Tajima’s D, Fu’s F and Fu and Li’s D* neutrality tests under assumption of constant population size from 10,000 coalescent simulations for mtDNA (control region), nDNA (RAG1) and combined analysis of mtDNA and nDNA (combined). Statistically significant results are shown in bold. A negative value for Tajma’s D and Fu’s F indicates a population expansion. For the California spotted owl the mtDNA and combined gene analyses showed significant evidence of a population expansion for all tests; however, the nDNA was only signficiant for an expansion for the Fu's F test. For the northern spotted owl the mtDNA and combined gene analyses showed significant evidence of a population expansion for all tests; however, the nDNA was not significant. For Mexican spotted owl the mtDNA was siginificant for a population expansion for all test except Tajima's D. The mtDNA gene sequences for Mexican spotted owl were accessed from GenBank and published in Barrowclough et al, 2006. The nDNA tests most likely did not reflect any population expansions or declines because of the slow mutation rate for RAG1.
DOI: 10.6084/m9.figshare.19545475
title: Uncertainty estimation of reference evapotranspiration (PISCOeo_pm)

description: Gridded uncertainty of reference evapotranspiration (PISCOeo_pm) at yearly (1981-2016) and monthly (1981-2016) scale at 0.01° for Peru
DOI: 10.25345/c50r9m760
title: MassIVE MSV000089220 - HME health care_Alcohol fermentation project
title: Alcohol fermentation is time-dependent. 0 day is the starter of alcohol fermentation. 3 days and 14 days means the period of fermentation. metabolites were extracted with 75% methanol.
DOI: 10.6084/m9.figshare.19545499
title: Seeds and bark-LCMS-RAW-Files.zip

description: This file contains LC-MS raw data on <em>Ulmus parvifolia </em>seeds and bark. POS represents postive ion model, NEG represents negative ion model. S represents seeds, B S represents bark.
DOI: 10.6084/m9.figshare.19545499.v1
title: Seeds and bark-LCMS-RAW-Files.zip

description: This file contains LC-MS raw data on <em>Ulmus parvifolia </em>seeds and bark. POS represents postive ion model, NEG represents negative ion model. S represents seeds, B S represents bark.
DOI: 10.6084/m9.figshare.19545553
title: Seeds and bark-LCMS-mzML-Files

description: The raw MS date (raw files) were converted to mzML files using ProteoWizard MSConvert. This file contains mzML files on Ulmus parvifolia seeds and bark. POS represents postive ion model, NEG represents negative ion model. S represents seeds, B S represents bark.
DOI: 10.6084/m9.figshare.19545556
title: Alignment dataset

description: Alingment dataset for Kise et al. (2022) "Epizoanthidae (Hexacorallia: Zoantharia) associated with<em> Granulifusus </em>gastropods (Neogastropoda: Fasciolariidae) from the Indo‑West Pacific<em>"</em>
DOI: 10.6084/m9.figshare.19545556.v1
title: Alignment dataset

description: Alingment dataset for Kise et al. (2022) "Epizoanthidae (Hexacorallia: Zoantharia) associated with<em> Granulifusus </em>gastropods (Neogastropoda: Fasciolariidae) from the Indo‑West Pacific<em>"</em>
DOI: 10.21227/f8dx-bp67
title: QSAR and ADMET Prediction Model of ERα Activity for Anti-breast Cancer Drug Candidates

description: The 729 molecular descriptor information (independent variables) of 1974 compoundsThe biological activity of 1974 compounds against ERαThe five ADMET properties
DOI: 10.6084/m9.figshare.19545709.v1
title: AFR-BERT-main.zip

description: Engineering Research.
DOI: 10.6084/m9.figshare.16901161.v2
title: Raw data.zip

description: It is Raw Data for Article "Overexpressed p-S6 associates with node metastasis and predicts poor prognosis in non-small cell lung cancer".
DOI: 10.6084/m9.figshare.16901161
title: Raw data.zip

description: It is Raw Data for Article "Overexpressed p-S6 associates with node metastasis and predicts poor prognosis in non-small cell lung cancer".
DOI: 10.6084/m9.figshare.16901161.v4
title: Raw data.zip

description: It is Raw Data for Article "Overexpressed p-S6 associates with node metastasis and predicts poor prognosis in non-small cell lung cancer".
DOI: 10.6084/m9.figshare.16901161.v3
title: Raw data.zip

description: It is Raw Data for Article "Overexpressed p-S6 associates with node metastasis and predicts poor prognosis in non-small cell lung cancer".
DOI: 10.5281/zenodo.6423611
title: tracer data for JGR

description: tracer data for JGR manuscript.
DOI: 10.5281/zenodo.6423610
title: tracer data for JGR

description: tracer data for JGR manuscript.
DOI: 10.25934/pr00003891.1
title: Available IPD datapackage for study 'A Long Term, Randomised, Double Blind, Placebo-controlled Study to Determine the Effect of Albiglutide, When Added to Standard Blood Glucose Lowering Therapies, on Major Cardiovascular Events in Patients With Type 2 Diabetes Mellitus'

description: Albiglutide is an analogue of glucagon-like peptide-1 (GLP-1), used to treat type 2 diabetes This study will test whether albiglutide affects the occurrence of major cardiovascular events such as heart attacks or strokes and other important medical outcomes in persons with type 2 diabetes, when used alone or added to other diabetes treatments.
DOI: 10.25919/ct1z-h668
title: Parkes observations for project P1114 semester 2021APRS_02

description: Giant pulses are the bright pulses with the pulse energy more than 10 times the average pulse energy. They can be divided into two classes, in which that from first class are seen in young and millisecond pulsars and that from second class are seen in middle-age pulsars. We propose observations with the Ultra-wide-bandwidth Low (UWL) receiver installed at the Parkes telescope to carry out a study of the giant pulses from the middle-age pulsars. We will obtain the spectrum and polarization profiles of these GPs over the wide bandwidth. We aim to compare the spectrum and polarization profiles between the giant pulses and the normal pulses. We will also investigate whether there are some connections between the two giant pulse classes.
DOI: 10.6084/m9.figshare.19547300
title: Supplementary File 6 from <i>Oca2</i> targeting using CRISPR/Cas9 in the Malawi cichlid <i>Astatotilapia calliptera</i>

description: Raw sanger sequences for cross 4
DOI: 10.6084/m9.figshare.19547300.v1
title: Supplementary File 6 from <i>Oca2</i> targeting using CRISPR/Cas9 in the Malawi cichlid <i>Astatotilapia calliptera</i>

description: Raw sanger sequences for cross 4
DOI: 10.6084/m9.figshare.19547303
title: Supplementary File 2 from <i>Oca2</i> targeting using CRISPR/Cas9 in the Malawi cichlid <i>Astatotilapia calliptera</i>

description: This file is an excel file summarising the genotyping results for all the crosses.
DOI: 10.6084/m9.figshare.19547303.v1
title: Supplementary File 2 from <i>Oca2</i> targeting using CRISPR/Cas9 in the Malawi cichlid <i>Astatotilapia calliptera</i>

description: This file is an excel file summarising the genotyping results for all the crosses.
DOI: 10.6084/m9.figshare.19547306.v1
title: Supplementary File 4 from <i>Oca2</i> targeting using CRISPR/Cas9 in the Malawi cichlid <i>Astatotilapia calliptera</i>

description: Raw sanger sequences for cross 2
DOI: 10.6084/m9.figshare.19547309.v1
title: Supplementary File 7 from <i>Oca2</i> targeting using CRISPR/Cas9 in the Malawi cichlid <i>Astatotilapia calliptera</i>

description: Raw sanger sequences for UTR mutant samples
DOI: 10.6084/m9.figshare.19547306
title: Supplementary File 4 from <i>Oca2</i> targeting using CRISPR/Cas9 in the Malawi cichlid <i>Astatotilapia calliptera</i>

description: Raw sanger sequences for cross 2
DOI: 10.6084/m9.figshare.19547309
title: Supplementary File 7 from <i>Oca2</i> targeting using CRISPR/Cas9 in the Malawi cichlid <i>Astatotilapia calliptera</i>

description: Raw sanger sequences for UTR mutant samples
DOI: 10.6084/m9.figshare.19547312
title: Supplementary File 3 from <i>Oca2</i> targeting using CRISPR/Cas9 in the Malawi cichlid <i>Astatotilapia calliptera</i>

description: Raw sanger sequences for cross 1
DOI: 10.6084/m9.figshare.19547312.v1
title: Supplementary File 3 from <i>Oca2</i> targeting using CRISPR/Cas9 in the Malawi cichlid <i>Astatotilapia calliptera</i>

description: Raw sanger sequences for cross 1
DOI: 10.6084/m9.figshare.19547318
title: Supplementary File 5 from <i>Oca2</i> targeting using CRISPR/Cas9 in the Malawi cichlid <i>Astatotilapia calliptera</i>

description: Raw sanger sequences for cross 3
DOI: 10.6084/m9.figshare.19547318.v1
title: Supplementary File 5 from <i>Oca2</i> targeting using CRISPR/Cas9 in the Malawi cichlid <i>Astatotilapia calliptera</i>

description: Raw sanger sequences for cross 3
DOI: 10.6084/m9.figshare.19547066
title: Klug et al RSOS Data February 2022.xlsx from Cascading effects of pre-adult survival on sexual selection

description: Sexual selection influences broad-scale patterns of biodiversity. While a large body of research has investigated the effect of mate competition on sexual selection, less work has examined how pre-adult life history influences sexual selection. We used a mathematical framework to explore the influence of pre-adult survival on sexual selection. Our model suggests that pre-adult male mortality will affect the strength of sexual selection when a fixed number of adult males have an advantageous mate-acquisition trait. When a fixed number of males have an advantageous mate-acquisition trait, sexual selection is expected to increase when pre-adult mortality is relatively low. By contrast, if a fixed proportion (rather than number) of adult males have a mate-acquisition trait, pre-adult male mortality is not expected to affect the strength of sexual selection. Further, if the advantageous mating trait affects pre-adult survival, natural and sexual selection can interact to influence the overall selection on the mating trait. Given that pre-adult mortality is often shaped by natural selection, our results highlight conditions under which natural selection can have cascading effects on sexual selection.
DOI: 10.6084/m9.figshare.19547066.v1
title: Klug et al RSOS Data February 2022.xlsx from Cascading effects of pre-adult survival on sexual selection

description: Sexual selection influences broad-scale patterns of biodiversity. While a large body of research has investigated the effect of mate competition on sexual selection, less work has examined how pre-adult life history influences sexual selection. We used a mathematical framework to explore the influence of pre-adult survival on sexual selection. Our model suggests that pre-adult male mortality will affect the strength of sexual selection when a fixed number of adult males have an advantageous mate-acquisition trait. When a fixed number of males have an advantageous mate-acquisition trait, sexual selection is expected to increase when pre-adult mortality is relatively low. By contrast, if a fixed proportion (rather than number) of adult males have a mate-acquisition trait, pre-adult male mortality is not expected to affect the strength of sexual selection. Further, if the advantageous mating trait affects pre-adult survival, natural and sexual selection can interact to influence the overall selection on the mating trait. Given that pre-adult mortality is often shaped by natural selection, our results highlight conditions under which natural selection can have cascading effects on sexual selection.
DOI: 10.6084/m9.figshare.19547237
title: Additional file 2 of RNA-seq coupling two different methods of castration reveals new insights into androgen deficiency-caused degeneration of submaxillary gland in male Sprague Dawley rats

description: Additional file 2. DEGs betweentreatment groups and mDEGs.
DOI: 10.6084/m9.figshare.19547237.v1
title: Additional file 2 of RNA-seq coupling two different methods of castration reveals new insights into androgen deficiency-caused degeneration of submaxillary gland in male Sprague Dawley rats

description: Additional file 2. DEGs betweentreatment groups and mDEGs.
DOI: 10.6084/m9.figshare.19547240
title: Additional file 3 of RNA-seq coupling two different methods of castration reveals new insights into androgen deficiency-caused degeneration of submaxillary gland in male Sprague Dawley rats

description: Additional file 3. Common DEGs regulated by both ORC and IM.
DOI: 10.6084/m9.figshare.19547243
title: Additional file 4 of RNA-seq coupling two different methods of castration reveals new insights into androgen deficiency-caused degeneration of submaxillary gland in male Sprague Dawley rats

description: Additional file 4. Functional enrichment analysis of DEGs between groups and mDEGs using DAVID) Bioinformatics Resources.
DOI: 10.6084/m9.figshare.19547243.v1
title: Additional file 4 of RNA-seq coupling two different methods of castration reveals new insights into androgen deficiency-caused degeneration of submaxillary gland in male Sprague Dawley rats

description: Additional file 4. Functional enrichment analysis of DEGs between groups and mDEGs using DAVID) Bioinformatics Resources.
DOI: 10.6084/m9.figshare.19547240.v1
title: Additional file 3 of RNA-seq coupling two different methods of castration reveals new insights into androgen deficiency-caused degeneration of submaxillary gland in male Sprague Dawley rats

description: Additional file 3. Common DEGs regulated by both ORC and IM.
DOI: 10.6084/m9.figshare.19547635
title: Report_DSug20-5273_SNP_2.csv

description: Sugar glider (Petaurus breviceps) genome-wide SNP data generated from DArTseq.
DOI: 10.6084/m9.figshare.19547635.v1
title: Report_DSug20-5273_SNP_2.csv

description: Sugar glider (Petaurus breviceps) genome-wide SNP data generated from DArTseq.
DOI: 10.6084/m9.figshare.19409940
title: Table S1: Differential gene expression analysis of NM-R and MM spleen transcriptomes from Immune competence and spleen size scale with colony status in the naked mole-rat

description: DESeq2 output tables for differential gene expression analysis comparing spleen samples from lsNM-R versus MM ("lsNM-R_vs_MM"), ssNM-R versus MM ("ssNM-R_vs_MM") and ssNM-R versus lsNM-R ("ssNM-R_vs_lsNM-R"), respectively. baseMean, average of the normalised count values; lfcSE, standard error estimate for log2FoldChange; stat, Wald statistic; padj, adjusted p value. For more details, see methods section.
DOI: 10.6084/m9.figshare.19409940.v2
title: Table S1: Differential gene expression analysis of NM-R and MM spleen transcriptomes from Immune competence and spleen size scale with colony status in the naked mole-rat

description: DESeq2 output tables for differential gene expression analysis comparing spleen samples from lsNM-R versus MM ("lsNM-R_vs_MM"), ssNM-R versus MM ("ssNM-R_vs_MM") and ssNM-R versus lsNM-R ("ssNM-R_vs_lsNM-R"), respectively. baseMean, average of the normalised count values; lfcSE, standard error estimate for log2FoldChange; stat, Wald statistic; padj, adjusted p value. For more details, see methods section.
DOI: 10.6084/m9.figshare.19518851
title: Table S2: Gene set enrichment analysis from Immune competence and spleen size scale with colony status in the naked mole-rat

description: GSEA results comparing ssNM-R versus MM spleen transcriptomic data sets. padj, adjusted p value; ES, enrichment score; NES, normalised enrichment score; nMoreExtreme, number of more significant random gene pathways. Pathway size: number of tested genes in the pathway. For more details, see methods section.
DOI: 10.6084/m9.figshare.19518851.v1
title: Table S2: Gene set enrichment analysis from Immune competence and spleen size scale with colony status in the naked mole-rat

description: GSEA results comparing ssNM-R versus MM spleen transcriptomic data sets. padj, adjusted p value; ES, enrichment score; NES, normalised enrichment score; nMoreExtreme, number of more significant random gene pathways. Pathway size: number of tested genes in the pathway. For more details, see methods section.
DOI: 10.6084/m9.figshare.19409940.v1
title: Table S1: Differential gene expression analysis of NM-R and MM spleen transcriptomes;Table S2: Gene set enrichment analysis ;Table S3: Hallmark gene set enrichment analysis from Immune competence and spleen size scale with colony status in the naked mole-rat

description: DESeq2 output tables for differential gene expression analysis comparing spleen samples from lsNM-R versus MM ("lsNM-R_vs_MM"), ssNM-R versus MM ("ssNM-R_vs_MM") and ssNM-R versus lsNM-R ("ssNM-R_vs_lsNM-R"), respectively. baseMean, average of the normalised count values; lfcSE, standard error estimate for log2FoldChange; stat, Wald statistic; padj, adjusted p value. For more details, see methods section.;GSEA results comparing ssNM-R versus MM spleen transcriptomic data sets. padj, adjusted p value; ES, enrichment score; NES, normalised enrichment score; nMoreExtreme, number of more significant random gene pathways. Pathway size: number of tested genes in the pathway. For more details, see methods section.;GSEA results comparing ssNM-R versus MM spleen transcriptomic data sets focusing on hallmark pathways. padj, adjusted p value; ES, enrichment score; NES, normalised enrichment score; nMoreExtreme, number of more significant random gene pathways. For more details, see methods section.
DOI: 10.6084/m9.figshare.19518857
title: Table S3: Hallmark gene set enrichment analysis from Immune competence and spleen size scale with colony status in the naked mole-rat

description: GSEA results comparing ssNM-R versus MM spleen transcriptomic data sets focusing on hallmark pathways. padj, adjusted p value; ES, enrichment score; NES, normalised enrichment score; nMoreExtreme, number of more significant random gene pathways. For more details, see methods section.
DOI: 10.6084/m9.figshare.19518857.v1
title: Table S3: Hallmark gene set enrichment analysis from Immune competence and spleen size scale with colony status in the naked mole-rat

description: GSEA results comparing ssNM-R versus MM spleen transcriptomic data sets focusing on hallmark pathways. padj, adjusted p value; ES, enrichment score; NES, normalised enrichment score; nMoreExtreme, number of more significant random gene pathways. For more details, see methods section.
DOI: 10.6073/pasta/d63676d35ea8bb0ef7eee47022eac6b6
title: Standard meteorology and ancillary data from the Tromble Weir experimental watershed tower at the Jornada Basin LTER site, 2010-ongoing

description: This data package contains 30-minute standard meteorology and ancillary data collected at an eddy covariance tower in the Tromble Weir Watershed area of the Jornada Basin in southern New Mexico, USA. These data are used to quantify the water and energy balances in a small experimental watershed, including observational studies to calculate groundwater recharge as a water balance residual, to build relations between soil moisture state and ET flux, and to quantify land-atmosphere interactions and improve our understanding of the eddy covariance method. Additionally, they have been used in modeling studies as a validation of model performance. This file presents the ancillary data collected at the eddy covariance tower, excluding the 20Hz flux measurements that are archived at AmeriFlux (site US-Jo2; http://ameriflux.lbl.gov/sites/siteinfo/US-Jo2). This includes soil moisture and temperature at 4 depths, air temperature and pressure, humidity and vapor pressure, ground heat flux, incoming and outgoing longwave and shortwave radiation, photosynthetically active radiation for a subset of the study period, and surface soil temperature. Instrument descriptions and detailed procedures are found in the references listed in the Methods section of this package. This is an ongoing dataset that will be updated annually.
DOI: 10.6084/m9.figshare.19386542
title: kidney

description: The data was obtained from clinical patients in Shengjing Hospital,
DOI: 10.6084/m9.figshare.19386542.v2
title: kidney

description: The data was obtained from clinical patients in Shengjing Hospital,
DOI: 10.6084/m9.figshare.19386542.v1
title: Enterotypes in asthenospermia patients with obesity

description: The data was obtained from clinical patients in Shengjing Hospital, including BMI, intestinal microbiome information, sperm quality and hormone values.
DOI: 10.48370/ofd/1ofu1i/4nqxrv
title: Fallacia elegans.JPG

description: :unav
DOI: 10.48370/ofd/1ofu1i
title: Fallacia elegans (Faldermann, 1837), C-655

description: Coleoptera collection
DOI: 10.5281/zenodo.6420917
title: Biological data science courses at UMONS, Belgium: student's activity for 2020-2021

description: Progression of the students in the different exercises of the biological data science courses at the University of Mons, Belgium for the academic year 2020-2021. Activity of the students was recorded to monitor their individual progression in asynchronous exercises. The courses were taught in flipped classroom by Philippe Grosjean (philippe.grosjean@umons.ac.be) and Guyliann Engels (guyliann.engels@umons.ac.be) the University of Mons. These authors designed almost all the teaching material, the exercises, and the related software. The courses were also taught at the Campus Charleroi by Raphaël Conotte (raphael.conotte@umons.ac.be) that also contributed to a part of the learnr exercises and of the inline course. <strong>How to use these data?</strong> The README file provides detailed information on the purpose, collection and management of the data. The data are presented in tabular format in CSV files. Metadata in the `datapackage.json` document the different tables and their fields. It is in the Frictionless data format (https://frictionlessdata.io). You can get a view of a part of these metadata by uploading the file `datapackage.json` into the inline data package creator at https://create.frictionlessdata.io. There is a large set of libraries and tools for different programming languages available at https://frictionlessdata.io/tooling/libraries/. Otherwise, any CSV library should import the data in your favourite software. Please, note that encoding is UTF8. For R, the {learnitdown} package provides specific functions to import these data and/or convert them in a SQLite database (https://www.sciviews.org/learnitdown/). For any question, send an email at sdd@sciviews.org.