cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.g780k
title: Data from: Ecology of ontogenetic body-mass scaling of gill surface area in a freshwater crustacean

description: Several studies have documented ecological effects on intra- and
 interspecific body-size scaling of metabolic rate. However, little is
 known about how various ecological factors may affect the scaling of
 respiratory structures supporting oxygen uptake for metabolism. Our study
 is apparently the first to provide evidence for ecological effects on the
 scaling of a respiratory structure among conspecific populations of any
 animal. We compared the body-mass scaling of gill surface area (SA) among
 eight spring-dwelling populations of the amphipod crustacean Gammarus
 minus. Although gill SA scaling was not related to water temperature,
 conductivity or G. minus population density, it was significantly related
 to predation regime (and secondarily to pH). Body-mass scaling slopes for
 gill SA were significantly lower in four populations inhabiting springs
 with fish predators than for those in four springs without fish (based on
 comparing means of the population slopes, or slopes calculated from pooled
 raw data for each comparison group). As a result, gill SA was
 proportionately smaller in adult amphipods from fish vs. fishless springs.
 This scaling difference paralleled similar differences in the scaling
 exponents for the rates of growth and resting metabolic rate. We
 hypothesized that gill SA scaling is shallower in fish vs. fishless spring
 populations of G. minus because of effects of size-selective predation on
 size-specific growth and activity that in turn affect the scaling of
 oxygen demand and concomitantly the gill capacity (SA) for oxygen uptake.
 Although influential theory claims that metabolic scaling is constrained
 by internal body design, our study builds on previous work to show that
 the scaling of both metabolism and the respiratory structures supporting
 it may be ecologically sensitive and evolutionarily malleable.
description: Data Table 1 (Plain
 text)Surface area of fifth
 coxal gill and dry body mass of 240 individual amphipods (Gammarus minus)
 collected from eight freshwater spring populations.JEB Dryad
 data.txtData Table 1
 (CSV)Surface area of fifth
 coxal gill and dry body mass of 240 individual amphipods (Gammarus minus)
 collected from eight freshwater spring populations.JEB Dryad
 data.csv
DOI: 10.5061/dryad.f809j
title: Data from: Sexual dichromatism in wing pigmentation of New World dragonflies follows Rensch’s rule

description: Many animal taxa that display sexual size dimorphism (SSD) exhibit a
 positive allometric relationship in which the degree of dimorphism
 increases with body size. This macroevolutionary pattern is known as
 Rensch's rule. Although sexual selection is hypothesized to be the
 main mechanism causing this pattern, body size is influenced by several
 selective forces, including natural and sexual selection. Therefore, by
 focusing exclusively on SSD one cannot ascertain which of these selective
 forces drives Rensch's rule. If sexual selection is indeed the main
 mechanism underlying Rensch's rule, we predict that other sexually
 selected traits, including colouration-based ornaments will also exhibit
 interspecific allometric scaling consistent with Rensch's rule. We
 tested this prediction using wing pigmentation of 89 species of
 dragonflies. Studies show that male wing pigmentation is generally under
 strong intra- and intersexual selection, so that sexual dichromatism in
 this trait should follow Rensch's rule. Conversely, the available
 evidence suggests that male body size is usually not sexually selected in
 dragonflies, so we do not expect SSD to follow Rensch's rule. First,
 we found that sexual dichromatism in wing pigmentation was consistent with
 Rensch's rule. The phylogenetic major axis regression slope was
 significantly greater than one. We also showed that the allometric slope
 for SSD was not different from unity, providing no support for
 Rensch's rule. Our results provide the first evidence that a trait
 which appears to be under strong sexual selection, exhibits a pattern
 consistent with Rensch's rule.
description: Libellulidae
 phylogenyThis is the tree that
 was used in our phylogenetic RMA analyses. This tree was reconstructed
 from Figure 4 of Carle et al. (2015) Arthropod Syst. Phylo, 73, 281-301.
 The tree was pruned to our dataset prior to analyses.Wing pigmentation and
 length of Libellulidae dragonfliesFile contains all the 89
 Libellulidae dragonfly species with wing pigmentation and wing length
 data. Data is supplied as (1) average wing length of the anterior right
 wing, per sex and per species; (2) average proportion of wing pigmentation
 of the posterior right wing, per sex and per species. Sample sizes are
 informed for each sex per species.Wing-pigmentation-Libellulidae.csvTerritoriality information of Libellulidae dragonfliesThis file contains information on whether a species is territorial or non-territorial (see main text for more information).Territoriality-Libellulidae.csv
DOI: 10.5061/dryad.pp06m3k
title: Data from: Forest structure provides the income for reproductive success in a southern population of Canada lynx

description: Understanding intrinsic and extrinsic drivers of reproductive success is
 central to advancing animal ecology and characterizing critical habitat.
 Unfortunately, much of the work examining drivers of reproductive success
 is biased toward particular groups of organisms (e.g., colonial birds,
 large herbivores, capital breeders). Long-lived mammalian carnivores that
 are of conservation concern, solitary, and territorial present an
 excellent situation to examine intrinsic and extrinsic drivers of
 reproductive success, yet they have received little attention. Here, we
 used a Canada lynx (Lynx canadensis) dataset, from the southern periphery
 of their range, to determine if reproductive success in a solitary
 carnivore was consistent with capital or income breeding. We radio-marked
 and monitored 36 female Canada lynx for 98 lynx years. We evaluated how
 maternal characteristics and indices of food supply (via forest structure)
 in core areas influenced variation in body condition and reproductive
 success. We characterized body condition as mass/length and reproductive
 success as whether a female produced a litter of kittens for a given
 breeding season. Consistent with life-history theory, we documented a
 positive effect of maternal age on body condition and reproductive
 success. In contrast to predictions of capital breeding, we observed no
 effect of pre-pregnancy body condition on reproductive success in Canada
 lynx. However, we demonstrated statistical effects of forest structure on
 reproductive success in Canada lynx, consistent with predictions of income
 breeding. The forest characteristics that defined high success included
 (1) abundant and connected mature forest and (2) intermediate amounts of
 small-diameter regenerating forest. These attributes are consistent with
 providing abundant, temporally stable, and accessible prey resources
 (i.e., snowshoe hares; Lepus americanus) for lynx and reinforce the
 bottom-up mechanisms influencing Canada lynx populations. Collectively,
 our results suggest that lynx on the southern range periphery exhibit an
 income breeding strategy and that forest structure supplies the income
 important for successful reproduction. More broadly, our insights advance
 the understanding of carnivore ecology and serve as an important example
 on integrating long-term field studies with ecological theory to advance
 landscape management.
description: Kostermanetal_Data_EcoApps
DOI: 10.5281/zenodo.18385012
title: Dataset for conference paper called "Influence of anti-resonant hollow-core fibers geometry on their acoustic vibrations sensitivity"

description: This dataset contains all relevent data for the conference paper called "Influence of anti-resonant hollow-core fibers geometry on their acoustic vibrations sensitivity".
DOI: 10.5281/zenodo.18385011
title: Dataset for conference paper called "Influence of anti-resonant hollow-core fibers geometry on their acoustic vibrations sensitivity"

description: This dataset contains all relevent data for the conference paper called "Influence of anti-resonant hollow-core fibers geometry on their acoustic vibrations sensitivity".
DOI: 10.15468/dl.ymsvv6
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Amomum tsao-ko"
 ]
}

 The dataset includes 35 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001359-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.3sv4634
title: Data from: Out of Africa: demographic and colonization history of the Algerian mouse (Mus spretus Lataste)

description: North Africa is now recognized as a major area for the emergence and
 dispersal of anatomically modern humans from at least 160 kya. The
 Mediterranean Basin is thus particularly suited to study the role of
 climate versus human-mediated changes on the evolutionary history of
 species. The Algerian mouse (Mus spretus Lataste) is an endemic species
 from this basin, with its distribution restricted to North Africa (from
 Libya to Morocco), Iberian Peninsula and South of France. A rich
 paleontological record of M. spretus exists in North Africa, suggesting
 hypotheses concerning colonization pathways, and the demographic and
 morphologic history of this species. Here we combined genetic (3
 mitochondrial DNA loci and 18 microsatellites) and climatic niche
 modelling data to infer the evolutionary history of the Algerian mouse. We
 collected 646 new individuals in 51 localities. Our results are consistent
 with an anthropogenic translocation of the Algerian mouse from North
 Africa to the Iberian Peninsula via Neolithic navigators, probably from
 the Tingitane Peninsula. Once arrived in Spain, suitable climatic
 conditions would then have favored the dispersion of the Algerian mice to
 France. The morphological differentiation observed between Spanish, French
 and North African populations could be explained by a founder effect and
 possibly local adaptation. This paper helps to better understand the role
 of climate versus human-mediated changes on the evolutionary history of
 mammal species in the Mediterranean Basin.
description: Description of 18
 microsatellite markers used in current studyCharacterization of 18
 microsatellite loci in Mus spretus. GenBank accession numbers for each
 microsatellite; Primer sequences (5’-3’); Repeat motifs. PCR Multiplex
 indicates multiplex (loci with the same number in this column were
 amplified and genotyped together).(Lalis & Orth,
 2014)µsat_Mus.xlsx
DOI: 10.5061/dryad.1st1h
title: Data from: Below-ground processes control the success of an invasive seaweed

description: 1. Whilst the successful establishment and spread of invasive species can
 be determined by above ground processes, results are often equivocal.
 Emergent research, mostly from terrestrial ecosystems, demonstrates that
 below-ground processes (nutrient cycling, chemical properties) under
 microbial control can mediate interactions between native and invasive
 plants. Because microbes can control similar sediment properties in marine
 ecosystem that influence plant fitness, we argue that below-ground
 properties should also exert strong control interactions between native
 and invasive marine macrophytes. 2. We coupled surveys of microbial
 communities and chemistry of sediments collected from an invasive alga
 (Caulerpa cylindracea), a native competitor (the seagrass Posidonia
 oceanica) and unvegetated sediments with a large field experiment, in
 which we manipulated the presence/absence of the canopies of both species
 to determine the effects of above- and below-ground processes on the
 success of C. cylindracea. 3. P. oceanica and C. cylindracea sediments
 have microbial communities and predicted metabolic process that reflect
 aerobic and anaerobic conditions, respectively. Moreover, the nutritional
 quantity of organic matter was higher, but quality was lower in C.
 cylindracea sediments compared to the two native habitats. The growth of
 C. cylindracea fragments was equally low in the presence or absence of a
 P. oceanica canopy, whereas the growth of C. cylindracea was higher in the
 canopy removed vs. present treatment, possibly because, in the absence of
 a C. cylindracea canopy, fragments are released from intra-specific
 competition for resources. 4. Synthesis: Sediment/soil processes are
 increasingly recognised as important drivers of the success and hence
 impacts of invasive plants. We extended this theory to marine ecosystems
 and suggest biotic resistance to invasion may not always be attributable
 to intact canopies, but may also result from indirect effects of native
 macrophytes on sediment quality and microbial processes. This information
 may, in part, resolve why above-ground interactions don’t always explain
 invasive plant success and thus can be used to develop better informed
 management strategies.
description: Morphology and
 survivorship of an invasive alga in response to canopy disturbance and
 sediment typeSediment chemistry and
 fragment trait data from a manipulative field
 experimentDryad_repository.xlsx
DOI: 10.5281/zenodo.18385061
title: Three-Dimensional Students' Emotional Interventions Data
DOI: 10.5061/dryad.8m8r1
title: Data from: Life in the dark: on the biology of the cavernicolous stonefly Protonemura gevi (Insecta, Plecoptera)

description: Protonemura gevi is a Palearctic stonefly with unique morphological
 adaptations for a cavernicolous life. In the present study, the
 development, nymphal and adult feeding, adult behavior and communication
 by drumming of this species are investigated. This species inhabits a
 stream flowing through a cave, in darkness and with a constant
 temperature. Nymphs of different sizes cohabit throughout the whole year,
 showing a non-seasonal life cycle. Nymphs at the entrance of the cave feed
 mainly on coarse particulate organic matter and hyphae, and nymphs at the
 end of the cave feed principally on detritus and, occasionally, on animal
 matter. Adults were present year around and aggregated on emergent stones
 at the end of the cave. No drumming signals were recorded; therefore, this
 species seems to rely mainly on aggregation to maximize pair encounters.
 As shown in this study, P. gevi have adaptations suited to life in the
 dark and the completion of its entire life cycle inside of a cave.
description: Protonemura gevi nymphs
 dataProtonemura gevi
 environment dataProtonemura gevi adults
 data
DOI: 10.5281/zenodo.18385060
title: Three-Dimensional Students' Emotional Interventions Data
DOI: 10.5061/dryad.q5451
title: Data from: The impact of seasonality on niche breadth, distribution range and species richness: a theoretical exploration of Janzen's hypothesis

description: Being invoked as one of the candidate mechanisms for the latitudinal
 patterns in biodiversity, Janzen's hypothesis states that the limited
 seasonal temperature variation in the tropics generates greater
 temperature stratification across elevations, which makes tropical species
 adapted to narrower ranges of temperatures and have lower effective
 dispersal across elevations than species in temperate regions. Numerous
 empirical studies have documented latitudinal patterns in species
 elevational ranges and thermal niche breadths that are consistent with the
 hypothesis, but the theoretical underpinnings remain unclear. This study
 presents the first mathematical model to examine the evolutionary
 processes that could back up Janzen's hypothesis and assess the
 effectiveness of limited seasonal temperature variation to promote
 speciation along elevation in the tropics. Results suggest that trade-offs
 in thermal tolerances provide a mechanism for Janzen's hypothesis.
 Limited seasonal temperature variation promotes gradient speciation not
 due to the reduction in gene flow that is associated with narrow thermal
 niche, but due to the pleiotropic effects of more stable divergent
 selection of thermal tolerance on the evolution of reproductive
 incompatibility. The proposed modelling approach also provides a potential
 way to test a speciation model against genetic data.
description: Matlab
 codetradeoffs.m is the
 function to model thermal niche evolution along elevations with seasonal
 variation in temperature, assuming tradeoffs in performance under
 different temperatures. notradeoffs.m is the function to model thermal
 niche evolution along elevations with seasonal variation in temperature,
 assuming no tradeoffs in performance under different temperatures.
 gradspeciation.m is the function to model evolution in haplotype clines
 along elevation with seasonal variation in temperature. Haplotypes are
 consist of two epistatic loci that may or may not have pleiotropic effects
 on the evolution of thermal tolerance.code.zip
DOI: 10.5061/dryad.1qs5c
title: Data from: Genetic diversity and population history of the endangered killifish Aphanius baeticus

description: The secondary freshwater fish fauna of the western-Iberian Peninsula basin
 is primarily restricted to local coastal streams, and man-made salt
 evaporation ponds, etc., which are susceptible to periodical flood and
 drought events. Despite its uniqueness in ecological adaptation to high
 saltwater tolerance, very little is known about this fauna’s population
 dynamics and evolutionary history. The killifish, Aphanius baeticus
 (Cyprinodontidae) is an endemic species restricted to river basins on
 Spain’s southern Atlantic coastline, considered as “Endangered.” In this
 study, the genetic structure, diversity and historical demography of A.
 baeticus were analyzed using mitochondrial (cytochrome b, N = 131) and
 nuclear (4 out of 19 microsatellites tested, N = 288) markers across its
 distribution range. The phylogenetic and networking reconstruction
 revealed subtle phylogeographic structuring. A scattered expansion at the
 beginning of the interglacial periods, coupled with posterior events of
 extinction and colonization caused by periodical cycles of flooding, could
 explain the absence of well-defined phylogenetic relationships among
 populations. Moreover, very low genetic diversity values and a weak
 population differentiation were detected. We proposed that dispersals
 allowed by periodic floods connecting river drainages may have promoted a
 wide genetic exchange among populations and could have contributed to the
 current genetic relatedness of these populations.
description: Abaeticus12popGenotype data for four microsatellite loci amplified in Aphanius baeticus. The file corresponds with Genepop's format and includes the populations (N=12) analyzed in the article.
DOI: 10.5061/dryad.553pg
title: Data from: Malagasy bats shelter a considerable genetic diversity of pathogenic Leptospira suggesting notable host-specificity patterns

description: Pathogenic Leptospira are the causative agents of leptospirosis, a disease
 of global concern with major impact in tropical regions. Despite the
 importance of this zoonosis for human health, the evolutionary and
 ecological drivers shaping bacterial communities in host reservoirs remain
 poorly investigated. Here, we describe Leptospira communities hosted by
 Malagasy bats, composed of mostly endemic species, in order to
 characterize host–pathogen associations and investigate their evolutionary
 histories. We screened 947 individual bats (representing 31 species, 18
 genera and seven families) for Leptospira infection and subsequently
 genotyped positive samples using three different bacterial loci. Molecular
 identification showed that these Leptospira are notably diverse and
 include several distinct lineages mostly belonging to Leptospira
 borgpetersenii and L. kirschneri. The exploration of the most probable
 host-pathogen evolutionary scenarios suggests that bacterial genetic
 diversity results from a combination of events related to the ecology and
 the evolutionary history of their hosts. Importantly, based on the data
 set presented herein, the notable host-specificity we have uncovered,
 together with a lack of geographical structuration of bacterial genetic
 diversity, indicates that the Leptospira community at a given site depends
 on the co-occurring bat species assemblage. The implications of such tight
 host-specificity on the epidemiology of leptospirosis are discussed.
description: Gomard_et_al_secY_adk_rrs2_Leptospira_alignmentsSequences (secY, adk and rrs2) of Leptospira from Malagasy bats.Gomard_et_al_secY_adk_rrs2_alignments.zip
DOI: 10.5061/dryad.j2130
title: Data from: Complex inter-kingdom interactions: carnivorous plants affect growth of an aquatic vertebrate

description: 1. Coexistence of organisms in nature is more likely when phenotypic
 similarities of individuals are reduced. Despite the lack of similarity,
 distantly related taxa still compete intensely for shared resources. No
 larger difference between organisms that share a common prey could exist
 than between carnivorous plants and animals. However, few studies have
 considered inter-Kingdom competition among carnivorous plants and animals.
 2. In order to evaluate interactions between a carnivorous plant (greater
 bladderwort, EUtricularia vulgaris) and a vertebrate (bluegill%, Lepomis
 macrochirus) on a shared prey (zooplankton), we conducted a mesocosm
 experiment. We deployed two levels of bladderwort presence (functional and
 crushed) and measured bluegill responses (survival and growth). 3.
 Zooplankton abundance was reduced the greatest in bluegill and functional
 bladderworts treatments. Bluegill survival did not differ among
 treatments, but growth was greatest with crushed bladderwort. Thus
 bluegill growth was facilitated by reducing interference competition in
 the presence of crushed bladderwort. The facilitating effect was dampened,
 however, when functional bladderwort removed a shared prey. 4.To our
 knowledge, this is one of the first studies to experimentally demonstrate
 interactions between a carnivorous plant and a fish. Our data suggests
 that carnivorous plants may actively promote or reduce animal
 co-occurrence from some ecosystems via facilitation or competition.
description: Bladderwort-bluegill
 exp't dataGrowth and survival data
 for Bluegill along with zooplankton counts by treatment