cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14052933
title: Additional file 2 of Lactobacillus reuteri-derived extracellular vesicles maintain intestinal immune homeostasis against lipopolysaccharide-induced inflammatory responses in broilers

description: Additional file 2: Table S2. A total of 92 overlapping proteins identified in triplicate biological samples of LrEVs.
DOI: 10.6084/m9.figshare.14052933.v1
title: Additional file 2 of Lactobacillus reuteri-derived extracellular vesicles maintain intestinal immune homeostasis against lipopolysaccharide-induced inflammatory responses in broilers

description: Additional file 2: Table S2. A total of 92 overlapping proteins identified in triplicate biological samples of LrEVs.
DOI: 10.6084/m9.figshare.13647935
title: Metadata record for: Global 1-km present and future hourly anthropogenic heat flux

description: This dataset contains key characteristics about the data described in the Data Descriptor Global 1-km present and future hourly anthropogenic heat flux. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.13647935.v3
title: Metadata record for: Global 1-km present and future hourly anthropogenic heat flux

description: This dataset contains key characteristics about the data described in the Data Descriptor Global 1-km present and future hourly anthropogenic heat flux. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.13647935.v2
title: Global 1-km present and future hourly anthropogenic heat flux

description: This dataset contains key characteristics about the data described in the Data Descriptor Global 1-km present and future hourly anthropogenic heat flux. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.14053020.v1
title: Additional file 1 of Gut microbiota of patients with different subtypes of gastric cancer and gastrointestinal stromal tumors

description: Additional file 1: Table S1. Summary statistics of the sample data.
DOI: 10.6084/m9.figshare.14053020
title: Additional file 1 of Gut microbiota of patients with different subtypes of gastric cancer and gastrointestinal stromal tumors

description: Additional file 1: Table S1. Summary statistics of the sample data.
DOI: 10.20351/29he20170208
title: GALILEO-IHM-2017 Cruise, RV Hespérides

description: GALILEO-IHM-2017 Cruise (29HE20170208) carried out on the Research Vessel Hespérides in 2017
DOI: 10.6084/m9.figshare.14053125.v1
title: Additional file 1 of Oligosaccharides increase the genotoxic effect of colibactin produced by pks+ Escherichia coli strains

description: Additional file 1: Table S1. Primers. Figure S1. Inulin and GOS increase the transcription of clbB-, clbQ- and clbR-lux. Growth curves of E. coli Nissle 1917 incubated with 0, 20, 30 and 40 mg/mL of inulin (A-C) or GOS (D-F) (OD600; filled symbols), and relative luminescence (RLU 106; opened symbols) of clbB-lux (A and D), clbQ-lux (B and E), and clbR-lux (C and F). Area under the curve (AUC) of RLU/OD600 for inulin (G-I) and GOS (J-L). *P
DOI: 10.6084/m9.figshare.14053125
title: Additional file 1 of Oligosaccharides increase the genotoxic effect of colibactin produced by pks+ Escherichia coli strains

description: Additional file 1: Table S1. Primers. Figure S1. Inulin and GOS increase the transcription of clbB-, clbQ- and clbR-lux. Growth curves of E. coli Nissle 1917 incubated with 0, 20, 30 and 40 mg/mL of inulin (A-C) or GOS (D-F) (OD600; filled symbols), and relative luminescence (RLU 106; opened symbols) of clbB-lux (A and D), clbQ-lux (B and E), and clbR-lux (C and F). Area under the curve (AUC) of RLU/OD600 for inulin (G-I) and GOS (J-L). *P
DOI: 10.20351/29he20170612
title: ZEE-2017 Cruise, RV Hespérides

description: ZEE-2017 Cruise (29HE20170612) carried out on the Research Vessel Hespérides in 2017
DOI: 10.6084/m9.figshare.14053345
title: Additional file 3 of Diaphragm echodensity in mechanically ventilated patients: a description of technique and outcomes

description: Additional file 3 Bland-Altman plot of repeated measurements of diaphragm echodensity according to the ultrasound machine (Philips, Mindray, Sonosite). The analyses were performed with the median grayscale value of the histogram (i.e grayscale intensity at 50th percentile of the total pixels = ED50).
DOI: 10.6084/m9.figshare.14053345.v1
title: Additional file 3 of Diaphragm echodensity in mechanically ventilated patients: a description of technique and outcomes

description: Additional file 3 Bland-Altman plot of repeated measurements of diaphragm echodensity according to the ultrasound machine (Philips, Mindray, Sonosite). The analyses were performed with the median grayscale value of the histogram (i.e grayscale intensity at 50th percentile of the total pixels = ED50).
DOI: 10.6084/m9.figshare.14053372
title: Additional file 1 of Overexpression of vesicle-associated membrane protein PttVAP27-17 as a tool to improve biomass production and the overall saccharification yields in Populus trees

description: Additional file 1: Fig. S1. Correlation matrix plot of data obtained from five platforms; GC–MS, LC–MS, Py–GC/MS, Proteomics, and Transcriptomics. Table S1. Monosaccharide composition of wood from wild-type (WT) and PttVAP27-17 overexpression lines of greenhouse-grown trees. Table S2. Relative abundance of metabolites identified by Pyrolysis–GC/MS analysis of wild-type and transgenic PttVAP27-17 overexpression lines grown in the greenhouse. Table S3. LC–MS metabolomic analysis of wild-type and PttVAP27-17 overexpression lines of greenhouse-grown trees. Table S4. GC–MS metabolomic analysis of wild-type and PttVAP27-17 overexpression lines of greenhouse-grown trees. Table S5. RNAseq analysis of wild-type and PttVAP27-17 overexpression lines of greenhouse-grown trees. Table S6. List of all peptides identified in the proteomic study. Table S7. List of all proteins identified in the proteomic study. Table S8. Genes co-expressed with PttVAP27-17. Table S9. Gene ontology (GO) analysis of transcripts (using tool REVIGO from Popgenie homepage popgenie.org) with statistically significant changes in the PttVAP27-17 overexpressing transgenic lines compared to the wild type of greenhouse-grown trees. Table S10. Gene ontology (GO) analysis of all proteins with statistically significant changes in the PttVAP27-17 overexpressing transgenic lines compared to the wild type of greenhouse-grown trees. Table S11. (a) Overexpression of PttVAP27-17 affects sugar yields of greenhouse-grown trees. (b) Overexpression of PttVAP27-17 affects sugar yields of field-grown trees.
DOI: 10.6084/m9.figshare.14053372.v1
title: Additional file 1 of Overexpression of vesicle-associated membrane protein PttVAP27-17 as a tool to improve biomass production and the overall saccharification yields in Populus trees

description: Additional file 1: Fig. S1. Correlation matrix plot of data obtained from five platforms; GC–MS, LC–MS, Py–GC/MS, Proteomics, and Transcriptomics. Table S1. Monosaccharide composition of wood from wild-type (WT) and PttVAP27-17 overexpression lines of greenhouse-grown trees. Table S2. Relative abundance of metabolites identified by Pyrolysis–GC/MS analysis of wild-type and transgenic PttVAP27-17 overexpression lines grown in the greenhouse. Table S3. LC–MS metabolomic analysis of wild-type and PttVAP27-17 overexpression lines of greenhouse-grown trees. Table S4. GC–MS metabolomic analysis of wild-type and PttVAP27-17 overexpression lines of greenhouse-grown trees. Table S5. RNAseq analysis of wild-type and PttVAP27-17 overexpression lines of greenhouse-grown trees. Table S6. List of all peptides identified in the proteomic study. Table S7. List of all proteins identified in the proteomic study. Table S8. Genes co-expressed with PttVAP27-17. Table S9. Gene ontology (GO) analysis of transcripts (using tool REVIGO from Popgenie homepage popgenie.org) with statistically significant changes in the PttVAP27-17 overexpressing transgenic lines compared to the wild type of greenhouse-grown trees. Table S10. Gene ontology (GO) analysis of all proteins with statistically significant changes in the PttVAP27-17 overexpressing transgenic lines compared to the wild type of greenhouse-grown trees. Table S11. (a) Overexpression of PttVAP27-17 affects sugar yields of greenhouse-grown trees. (b) Overexpression of PttVAP27-17 affects sugar yields of field-grown trees.
DOI: 10.20351/29he20170408
title: RETRO-BMC Cruise, RV Hespérides

description: RETRO-BMC Cruise (29HE20170408) carried out on the Research Vessel Hespérides in 2017
DOI: 10.6084/m9.figshare.14053462
title: Additional file 2 of Novel DNA methylation signatures of tobacco smoking with trans-ethnic effects

description: Additional file 2: Table S1. Statistically significant CpGs in relation to current versus never smoking status at false discovery rate (FDR)
DOI: 10.6084/m9.figshare.14053462.v1
title: Additional file 2 of Novel DNA methylation signatures of tobacco smoking with trans-ethnic effects

description: Additional file 2: Table S1. Statistically significant CpGs in relation to current versus never smoking status at false discovery rate (FDR)
DOI: 10.20351/29gd20130915
title: MEDESS Cruise, RV García del Cid

description: MEDESS Cruise (29GD20130915) carried out on the Research Vessel García del Cid in 2013
DOI: 10.20351/29gd20190618
title: BIOGAPS Cruise, RV García del Cid

description: RADMED-ESMARES-0620 Cruise (29GD20190618) carried out on the Research Vessel García del Cid in 2019
DOI: 10.20351/29he20190406
title: FICARAM-XVIII Cruise, RV Hespérides

description: FICARAM-XVIII Cruise (29HE20190406) carried out on the Research Vessel Hespérides in 2019
DOI: 10.20351/29sg20181230
title: BRAVOSEIS-2 Cruise, RV Sarmiento de Gamboa 

description: BRAVOSEIS-2 Cruise (29SG20181230) carried out on the Research Vessel Sarmiento de Gamboa in 2018
DOI: 10.6084/m9.figshare.14053591
title: Additional file 1 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 1. Merged MetaPhlAn2 table from all 131 WMS samples, where each row is a separate taxonomic level. These data have not been normalized.
DOI: 10.6084/m9.figshare.14053594
title: Additional file 2 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 2. HUMAnN2 pathway and gene family results. Pathway results are in the first tab, while gene family results are in the second tab. Only gene families with unadjusted p
DOI: 10.6084/m9.figshare.14053594.v1
title: Additional file 2 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 2. HUMAnN2 pathway and gene family results. Pathway results are in the first tab, while gene family results are in the second tab. Only gene families with unadjusted p
DOI: 10.6084/m9.figshare.14053597
title: Additional file 3 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 3. Flavonifractor sp. 54 gene annotations, including those that were defined as OTU41-characteristic genes. Definitions for columns are found in the first tab.
DOI: 10.6084/m9.figshare.14053600
title: Additional file 4 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 4. De-identified sample metadata, which includes sample ID, study arm, anonymous patient ID, and visit information.
DOI: 10.6084/m9.figshare.14053603.v1
title: Additional file 5 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 5. FASTA format file containing representative sequences for OTUs in this study, including OTU41.
DOI: 10.6084/m9.figshare.14053591.v1
title: Additional file 1 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 1. Merged MetaPhlAn2 table from all 131 WMS samples, where each row is a separate taxonomic level. These data have not been normalized.
DOI: 10.6084/m9.figshare.14053600.v1
title: Additional file 4 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 4. De-identified sample metadata, which includes sample ID, study arm, anonymous patient ID, and visit information.
DOI: 10.6084/m9.figshare.14053597.v1
title: Additional file 3 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 3. Flavonifractor sp. 54 gene annotations, including those that were defined as OTU41-characteristic genes. Definitions for columns are found in the first tab.
DOI: 10.6084/m9.figshare.14053603
title: Additional file 5 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 5. FASTA format file containing representative sequences for OTUs in this study, including OTU41.
DOI: 10.6084/m9.figshare.14053606
title: Additional file 6 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 6. The unfiltered raw count OTU table generated by UPARSE for all sequenced samples.
DOI: 10.6084/m9.figshare.14053606.v1
title: Additional file 6 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 6. The unfiltered raw count OTU table generated by UPARSE for all sequenced samples.
DOI: 10.6084/m9.figshare.14053609
title: Additional file 7 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 7. The OTU table with sample and OTU filtering, rarefied to 5000 reads/sample, which was used in downstream analysis.
DOI: 10.6084/m9.figshare.14053609.v1
title: Additional file 7 of Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

description: Additional file 7. The OTU table with sample and OTU filtering, rarefied to 5000 reads/sample, which was used in downstream analysis.
DOI: 10.6084/m9.figshare.14053635.v1
title: Additional file 2 of Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing

description: Additional file 2: Table S1. All XCI status calls made in this study compared to human.Table S1. All XCI status calls made in this study compared to human.
DOI: 10.6084/m9.figshare.14053638.v1
title: Additional file 3 of Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing

description: Additional file 3: Table S2. Individual XCI status calls per dataset. Each sheet is a separate dataset analyzed.
DOI: 10.6084/m9.figshare.14053641
title: Additional file 4 of Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing

description: Additional file 4: Table S3.The sources of data used in this study. See separate sheets for different types of data used.
DOI: 10.6084/m9.figshare.14053644.v1
title: Additional file 5 of Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing

description: Additional file 5: Table S4. Enrichment of repeats, CTCF and ATAC-seq at genes escaping vs subject to XCI.
DOI: 10.6084/m9.figshare.14053638
title: Additional file 3 of Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing

description: Additional file 3: Table S2. Individual XCI status calls per dataset. Each sheet is a separate dataset analyzed.
DOI: 10.6084/m9.figshare.14053644
title: Additional file 5 of Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing

description: Additional file 5: Table S4. Enrichment of repeats, CTCF and ATAC-seq at genes escaping vs subject to XCI.
DOI: 10.6084/m9.figshare.14053647
title: Additional file 6 of Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing

description: Additional file 6: Table S5. The number of predicted CTCF binding sites between genes in a discordant region.
DOI: 10.6084/m9.figshare.14053647.v1
title: Additional file 6 of Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing

description: Additional file 6: Table S5. The number of predicted CTCF binding sites between genes in a discordant region.
DOI: 10.6084/m9.figshare.14053635
title: Additional file 2 of Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing

description: Additional file 2: Table S1. All XCI status calls made in this study compared to human.Table S1. All XCI status calls made in this study compared to human.
DOI: 10.6084/m9.figshare.14053641.v1
title: Additional file 4 of Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing

description: Additional file 4: Table S3.The sources of data used in this study. See separate sheets for different types of data used.
DOI: 10.6084/m9.figshare.14053672
title: Additional file 6 of The dysbiosis of ovine foot microbiome during the development and treatment of contagious ovine digital dermatitis

description: Additional file 6: Supplementary Data 2. Reads per sample data file.
DOI: 10.6084/m9.figshare.14053672.v1
title: Additional file 6 of The dysbiosis of ovine foot microbiome during the development and treatment of contagious ovine digital dermatitis

description: Additional file 6: Supplementary Data 2. Reads per sample data file.
DOI: 10.6084/m9.figshare.14053680
title: Additional file 10 of Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes

description: Additional file 10: Table S1. Processing time per image for Mm Value, SD, entropy and COR. The processing time was measured for input images of various sizes. The parameter settings were changed according to the image size. Processing time per image was calculated by averaging the processing time of 1000 images. The processing time for Mm Value was equivalent to that for SD, and that for entropy was greater than that for Mm Value or SD. The computational complexities of the SD and entropy are of the order of O(W2M2) and O(W2M2) + O(GM2), respectively, where W is the window size, M is the size of the input image and G is the number of grey levels of the input image. The processing time for the first-order statistical features was less than that for COR when the input images were small (30 × 30 pixels), but greater than that for COR when the input images were large (150 × 150 pixels). This was because the processing times for the first-order statistical features increased with the image size, but the processing time for COR was largely unaffected by the image size.
DOI: 10.6084/m9.figshare.14053680.v1
title: Additional file 10 of Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes

description: Additional file 10: Table S1. Processing time per image for Mm Value, SD, entropy and COR. The processing time was measured for input images of various sizes. The parameter settings were changed according to the image size. Processing time per image was calculated by averaging the processing time of 1000 images. The processing time for Mm Value was equivalent to that for SD, and that for entropy was greater than that for Mm Value or SD. The computational complexities of the SD and entropy are of the order of O(W2M2) and O(W2M2) + O(GM2), respectively, where W is the window size, M is the size of the input image and G is the number of grey levels of the input image. The processing time for the first-order statistical features was less than that for COR when the input images were small (30 × 30 pixels), but greater than that for COR when the input images were large (150 × 150 pixels). This was because the processing times for the first-order statistical features increased with the image size, but the processing time for COR was largely unaffected by the image size.
DOI: 10.6084/m9.figshare.14053762
title: Additional file 6 of Genomic evidence for sulfur intermediates as new biogeochemical hubs in a model aquatic microbial ecosystem

description: Additional file 5: Supplementary Table S1. Description of the genomic bins with sulfur-cycling genes identified in the Lake A microbiome presented in Figure 3.
DOI: 10.6084/m9.figshare.14053762.v1
title: Additional file 6 of Genomic evidence for sulfur intermediates as new biogeochemical hubs in a model aquatic microbial ecosystem

description: Additional file 5: Supplementary Table S1. Description of the genomic bins with sulfur-cycling genes identified in the Lake A microbiome presented in Figure 3.
DOI: 10.6084/m9.figshare.14053771
title: Additional file 1 of Incidence of urinary tract infection in neonates with significant indirect Hyperbilirubinemia of unknown etiology: case-control study

description: Additional file 1.
DOI: 10.6084/m9.figshare.14053771.v1
title: Additional file 1 of Incidence of urinary tract infection in neonates with significant indirect Hyperbilirubinemia of unknown etiology: case-control study

description: Additional file 1.
DOI: 10.34820/fk2/5sevhv/xo2xj5
title: MOM-CELOE-20210215.txt

description: :unav
DOI: 10.34820/fk2/5sevhv
title: Dataset

description: desc
DOI: 10.6084/m9.figshare.13208192
title: Mechanical data from compression experiments on sintered glass bead samples

description: The text files are mechanical data from triaxial (TRX) and hydrostatic (HYD) compression experiments performed on cylindric samples of sintered glass beads. The experiments were performed at the Ecole et Observatoire des Sciences de la Terre de Strasbourg following the procedure detailed by Baud et al. (2015), on water saturated samples, under confining pressure ranging from 30 to 190 MPa and a constant pore pressure of 10 MPa. The data files are .txt files of the evolution through the experiment of the following parameters: confining pressure Pc, pore pressure Pp, effective pressure Peff, effective mean stress P, differential stress Q, axial strain, and porosity reduction dPHI. <br>