cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4729954
title: Tristerix corymbosus microsatellite library

description: This repository entry contains the microsatellite library generated for the mistletoe <i>Tristerix corymbosus</i> (Loranthaceae). This microsatellite library was generated using 454 Next Generation Sequencing. The FASTQ file attached is complementary to the original publication:<br><br>Fontúrbel, F.E., M.M. Murúa & C. Vega-Retter. 2016. Development of ten microsatellite markers from the keystone mistletoe <i>Tristerix corymbosus</i> (Loranthaceae) using 454 next generation sequencing and their applicability to population genetic structure studies. Molecular Biology Reports 43(5): 339-343. doi: 10.1007/s11033-016-3970-6<br><br>Data contained in this library could be used freely on the sole condition than the original paper and this repository entry is cited.<br><br>How to cite this data:<br>Fontúrbel, F.E., M.M. Murúa & C. Vega-Retter. 2017. <i>Tristerix corymbosus</i> microsatellite library. Figshare, doi: 10.6084/m9.figshare.4729954
DOI: 10.6084/m9.figshare.4729954.v1
title: Tristerix corymbosus microsatellite library

description: This repository entry contains the microsatellite library generated for the mistletoe <i>Tristerix corymbosus</i> (Loranthaceae). This microsatellite library was generated using 454 Next Generation Sequencing. The FASTQ file attached is complementary to the original publication:<br><br>Fontúrbel, F.E., M.M. Murúa & C. Vega-Retter. 2016. Development of ten microsatellite markers from the keystone mistletoe <i>Tristerix corymbosus</i> (Loranthaceae) using 454 next generation sequencing and their applicability to population genetic structure studies. Molecular Biology Reports 43(5): 339-343. doi: 10.1007/s11033-016-3970-6<br><br>Data contained in this library could be used freely on the sole condition than the original paper and this repository entry is cited.<br><br>How to cite this data:<br>Fontúrbel, F.E., M.M. Murúa & C. Vega-Retter. 2017. <i>Tristerix corymbosus</i> microsatellite library. Figshare, doi: 10.6084/m9.figshare.4729954
DOI: 10.6084/m9.figshare.4730038.v1
title: RT-qPCR Tspan6 KO results

description: 1. Excel file with the qPCR results.<br>2. Western blot images from primary cortical lysates immunoblotted with Tspan6 and Actin antibodies. <br>
DOI: 10.6084/m9.figshare.4729840
title: Newborn sleep EEG data

description: The dataset includes 1,110 sleep EEG recorded in clinical conditions from newborns in 10 age groups from 36 to 45 weeks is available as MATLAB .mat files.<br><br>Each .mat file contains approx. 100 recordings made using two channels, C3-T3 and C4-T4. The EEG are saved as cell array D2{nrecordings,nchannels}. <br>
DOI: 10.6084/m9.figshare.4729867
title: Supplementary Material for: Protecting Effects of Gonadotropin-Releasing Hormone Agonist on Chemotherapy-Induced Ovarian Damage in Premenopausal Breast Cancer Patients: A Systematic Review and Meta-Analysis

description: <b><i>Objective:</i></b> There is no universal consensus on whether gonadotropin-releasing hormone (GnRH) agonist could protect chemotherapy-induced ovarian damage in premenopausal breast cancer patients. This meta-analysis was conducted to estimate the protective effects of GnRH agonist on premenopausal breast cancer patients in details. <b><i>Methods:</i></b> PubMed, Cochrane Library, Embase, CNKI and the Chinese Wangfang Database, conference proceedings and clinical trials were searched to find studies reported since 2000. Heterogeneity for the eligible data was assessed and a pooled odds ratio (OR) with 95% confidence interval (CI) was calculated. <b><i>Results:</i></b> Resumption of menses rate was improved in the GnRH agonist and chemotherapy-combination groups versus chemotherapy-alone groups (OR = 1.36, 95% CI: 1.19-1.56). Furthermore, the results indicated that spontaneous pregnancy rate was improved in the experimental groups versus the controls (OR = 1.90, 95% CI: 1.06-3.41). In addition, no publication bias was found using a Begg's funnel plot. <b><i>Conclusion:</i></b> The results of the current meta-analysis indicate that a GnRH agonist could improve resumption of menses rate and pregnancy rate for premenopausal breast cancer patients. However, more evaluation may be considered to prove this theory.
DOI: 10.6084/m9.figshare.4729960.v1
title: Probability based library search algorithm improves identification of drugs in urine by LC-QqTOF

description: This dataset contains high resolution mass spectral data from 41 human urine samples. The data was collected according to the procedure outlined in Thoren et al., Clinical Chemistry, 2016. Each tab of the spreadsheet shows the same data analyzed against the same spectral library, but using a different library search algorithm.
DOI: 10.6084/m9.figshare.4729867.v1
title: Supplementary Material for: Protecting Effects of Gonadotropin-Releasing Hormone Agonist on Chemotherapy-Induced Ovarian Damage in Premenopausal Breast Cancer Patients: A Systematic Review and Meta-Analysis

description: <b><i>Objective:</i></b> There is no universal consensus on whether gonadotropin-releasing hormone (GnRH) agonist could protect chemotherapy-induced ovarian damage in premenopausal breast cancer patients. This meta-analysis was conducted to estimate the protective effects of GnRH agonist on premenopausal breast cancer patients in details. <b><i>Methods:</i></b> PubMed, Cochrane Library, Embase, CNKI and the Chinese Wangfang Database, conference proceedings and clinical trials were searched to find studies reported since 2000. Heterogeneity for the eligible data was assessed and a pooled odds ratio (OR) with 95% confidence interval (CI) was calculated. <b><i>Results:</i></b> Resumption of menses rate was improved in the GnRH agonist and chemotherapy-combination groups versus chemotherapy-alone groups (OR = 1.36, 95% CI: 1.19-1.56). Furthermore, the results indicated that spontaneous pregnancy rate was improved in the experimental groups versus the controls (OR = 1.90, 95% CI: 1.06-3.41). In addition, no publication bias was found using a Begg's funnel plot. <b><i>Conclusion:</i></b> The results of the current meta-analysis indicate that a GnRH agonist could improve resumption of menses rate and pregnancy rate for premenopausal breast cancer patients. However, more evaluation may be considered to prove this theory.
DOI: 10.6084/m9.figshare.4729732
title: Supplementary Material for: Reactions of Buckwheat-Hypersensitive Patients during Oral Food Challenge Are Rare, but Often Anaphylactic

description: <b><i>Background:</i></b> Buckwheat (BW) is a common cause of life-threatening allergy in Asia. Few have examined oral food challenges (OFCs) using BW. We here describe the OFC outcomes for the diagnosis or confirmation of tolerance acquisition and clarify risk factors for positive OFCs. <b><i>Methods:</i></b> Between July 2005 and March 2014, we retrospectively reviewed data from children who underwent OFCs using 3,072 mg of BW protein at Sagamihara National Hospital. Children were suspected of having BW allergy because of positive results for BW-specific IgE or because they had been previously diagnosed with BW allergy owing to immediate reactions to BW. <b><i>Results:</i></b> Of 476 such patients, we analyzed 419 aged 1-17 years (median age 6.7 years). Forty-four (10.5%) reacted to the BW OFC and 24 (54.5%) experienced anaphylaxis. Among patients with suspected BW allergies (<i>n</i> = 369), 30 (8.1%) reacted to OFC. However, among patients with definitive BW allergies (<i>n</i> = 50) who underwent OFCs a median of 7.0 years after their last immediate reaction, 14 (28.0%) reacted to OFC. Among 12 patients with past anaphylactic reactions to BW, 8 exhibited tolerance to BW. A history of immediate reaction to BW and high BW-specific IgE levels were significant risk factors for a positive OFC. <b><i>Conclusions:</i></b> BW allergies are rare among children suspected of having BW allergies due to positivity for BW-specific IgE. Most children with definitive BW allergies can tolerate BW, even after anaphylactic reactions. Nevertheless, careful observation is needed when performing BW OFCs, considering the high incidence of anaphylactic reactions.
DOI: 10.6084/m9.figshare.4729756
title: Supplementary Material for: EAWE: Examination of Anomalous World Experience

description: The “EAWE: Examination of Anomalous World Experience” is a detailed semi-structured interview format whose aim is to elicit description and discussion of a person's experience of various aspects of their lived world. The instrument is grounded in the tradition of phenomenological psychopathology and aims to explore, in a qualitatively rich manner, six key dimensions of subjectivity - namely, a person's experience of: (1) Space and objects, (2) Time and events, (3) Other persons, (4) Language (whether spoken or written), (5) Atmosphere (overall sense of reality, familiarity, vitality, meaning, or relevance), and (6) Existential orientation (values, attitudes, and worldviews). The EAWE is based on and primarily directed toward experiences thought to be common in, and sometimes distinctive of, schizophrenia spectrum conditions. It can, however, also be used to investigate anomalies of world experience in other populations. After a theoretical and methodological introduction, the EAWE lists 75 specific items, often with subtypes, in its six domains, together with illustrative quotations from patients. The EAWE appears in a special issue of <i>Psychopathology</i> that also contains an orienting preface (where the difficulty as well as necessity of studying subjective life is acknowledged) and a brief reliability report. Also included are six ancillary or background articles, which survey phenomenologically oriented theory, research, and clinical lore relevant to the six experiential domains.
DOI: 10.6084/m9.figshare.4729669
title: Permian copper–polymetallic mineralization in the southern Great Xing’an Range, Northeast China: the Daolundaba copper–polymetallic deposit example

description: The Daolundaba Cu–polymetallic deposit is a newly discovered Cu–W–Sn deposit on the western slopes of the southern Great Xing’an Range, and its mineralization was related to an early Permian coarse-grained biotite granite. However, there is little information on the age of formation of the deposit. In this article, we present the results of our investigation into the age of the Daolundaba Cu–polymetallic deposit, which involved the selection of chalcopyrite and pyrrhotite samples for Rb–Sr isochron dating. A Rb–Sr isochron defined by the chalcopyrite samples yielded a Rb–Sr isochron age of 290.0 ± 11 Ma (MSWD = 1.2) with an initial Sr isotopic composition (<i>I</i><sub>Sr</sub>) of 0.71446. The pyrrhotite samples yielded a Rb–Sr isochron age of 283.0 ± 2.6 Ma (MSWD = 1.16) with an initial Sr isotopic composition (<i>I</i><sub>Sr</sub>) of 0.71447. The Rb–Sr isochron age determined from the chalcopyrite and pyrrhotite is 282.7 ± 1.7 Ma (MSWD = 1.13). These results indicate that the Daolundaba Cu–polymetallic deposit formed during the early Permian (282.7–290.0 Ma). The Rb and Sr contents of the chalcopyrite and pyrrhotite range from ~0.1325 to ~3.6810 ppm and from ~0.1219 to ~9.5740 ppm, respectively, and the initial Sr isotope ratios (<i>I</i><sub>Sr</sub>) range from 0.71047 to 0.71869, with an average of 0.714723. These isotopic characteristics indicate the ore-forming minerals of the Daolundaba Cu–polymetallic deposit originated mainly from the crust, but with small amounts of mantle material involved. The copper was derived from the associated magma whereas the W and Sn was derived from the surrounding strata. The Permian mineralization of the Xing’an–Mongolia region occurred in an active continental margin setting during subduction of the Palaeo-Asian oceanic plate beneath the Siberian Plate.
DOI: 10.6084/m9.figshare.4729672
title: Petrogenesis and tectonic implications of late Mesozoic granitoids in southern Anhui Province, southeastern China

description: Late Mesozoic granitoids are widely distributed in southern Anhui Province, southeastern China, which also contains significant W–Mo–Cu mineralization. This study presents new geochronological and geochemical data that reveal the petrogenesis and tectonic affinity of the granitoids in this region. These granitoids can be divided into a high-K calc-alkaline and peraluminous I-type granodiorites, and an alkaline and metaluminous A-type granites, with zircon U–Pb dating indicating that they formed at 150–138 and 133–124 Ma, respectively. The early stage I-type granodiorites are adakitic, enriched in the light rare earth elements, and depleted in Nb, Ta, P, and Ti. They have negative zircon <i>ε</i><sub>Hf</sub>(<i>t</i>) values (–19.8 to –2.5) that correspond to Hf crustal model ages of 2.4–1.4 Ga. These early stage granodiorites were derived from partial melting of thickened Palaeoproterozoic–Mesoproterozoic lower crust. The late-stage A-type granites with strong depletion in Sr, P, and Ti, contain higher Zr, Y, and Yb contents, higher zircon <i>ε</i><sub>Hf</sub>(<i>t</i>) values (–1.5 to +2.1), and younger zircon Hf model ages (1.1–1.3 Ga) than the early stage granodiorites. The geochemistry of these A-type granites indicates they were likely generated by the reworking of Mesoproterozoic to Neoproterozoic juvenile crustal material that experienced the fractional crystallization of plagioclase and accessory minerals. Combining these data with other geological data from the study area indicates that the early stage granodiorites formed in a continental arc setting, whereas the late-stage granites formed in an extensional setting associated with roll-back of the subducted Palaeo-Pacific slab. The results indicate that zircon Ce<sup>4+</sup>/Ce<sup>3+</sup> value can provide useful insight into oxygen fugacity conditions during magmatism.
DOI: 10.6084/m9.figshare.4729669.v1
title: Permian copper–polymetallic mineralization in the southern Great Xing’an Range, Northeast China: the Daolundaba copper–polymetallic deposit example

description: The Daolundaba Cu–polymetallic deposit is a newly discovered Cu–W–Sn deposit on the western slopes of the southern Great Xing’an Range, and its mineralization was related to an early Permian coarse-grained biotite granite. However, there is little information on the age of formation of the deposit. In this article, we present the results of our investigation into the age of the Daolundaba Cu–polymetallic deposit, which involved the selection of chalcopyrite and pyrrhotite samples for Rb–Sr isochron dating. A Rb–Sr isochron defined by the chalcopyrite samples yielded a Rb–Sr isochron age of 290.0 ± 11 Ma (MSWD = 1.2) with an initial Sr isotopic composition (<i>I</i><sub>Sr</sub>) of 0.71446. The pyrrhotite samples yielded a Rb–Sr isochron age of 283.0 ± 2.6 Ma (MSWD = 1.16) with an initial Sr isotopic composition (<i>I</i><sub>Sr</sub>) of 0.71447. The Rb–Sr isochron age determined from the chalcopyrite and pyrrhotite is 282.7 ± 1.7 Ma (MSWD = 1.13). These results indicate that the Daolundaba Cu–polymetallic deposit formed during the early Permian (282.7–290.0 Ma). The Rb and Sr contents of the chalcopyrite and pyrrhotite range from ~0.1325 to ~3.6810 ppm and from ~0.1219 to ~9.5740 ppm, respectively, and the initial Sr isotope ratios (<i>I</i><sub>Sr</sub>) range from 0.71047 to 0.71869, with an average of 0.714723. These isotopic characteristics indicate the ore-forming minerals of the Daolundaba Cu–polymetallic deposit originated mainly from the crust, but with small amounts of mantle material involved. The copper was derived from the associated magma whereas the W and Sn was derived from the surrounding strata. The Permian mineralization of the Xing’an–Mongolia region occurred in an active continental margin setting during subduction of the Palaeo-Asian oceanic plate beneath the Siberian Plate.
DOI: 10.6084/m9.figshare.4729675
title: Integrative taxonomic revision of <i>Campylocia</i> (mayflies: Ephemeroptera, Euthyplociidae)

description: A morphological comparison of type and non-type material of species of <i>Campylocia</i>, including their junior synonyms, was conducted, in addition to neighbour joining based on K2P distances and Bayesian inference analyses of 376 bp of the mitochondrial gene cytochrome oxidase I (COI) of recently collected specimens. Results revealed the lack of distinguishing characters between <i>C. bocainensis</i> and <i>C. dochmia</i> supported by the molecular analysis, where the overlap of intra- and interspecific genetic divergences suggested genetic flow among individuals. <i>Campylocia burmeisteri</i> is revalidated as a senior synonym of Brazilian south-eastern species <i>C. bocainensis</i> and <i>C. dochmia</i> and of <i>E. guntheri</i>, formerly a synonym of <i>C. anceps</i>. <i>Campylocia burmeisteri</i> is redescribed based on material from its type-locality, Nova Friburgo, Rio de Janeiro State. Two new species, <i>C. demoulini</i> sp. nov. and <i>C. araca</i> sp. nov., are described from the Amazon rain forest and a third species, <i>C. orosi</i> sp. nov., is described from Costa Rica. Possible cryptic species and the utility of egg morphology in the taxonomy of <i>Campylocia</i> are discussed for the first time for the genus. A key to the identification of adult stages of <i>Campylocia</i> is provided based on male genitalia and egg morphologyhttp://zoobank.org/urn:lsid:zoobank.org:pub:6779DC2C-DB98-41DF-8C52-FF97366AAF7A
DOI: 10.6084/m9.figshare.4729675.v2
title: Integrative taxonomic revision of <i>Campylocia</i> (mayflies: Ephemeroptera, Euthyplociidae)

description: A morphological comparison of type and non-type material of species of <i>Campylocia</i>, including their junior synonyms, was conducted, in addition to neighbour joining based on K2P distances and Bayesian inference analyses of 376 bp of the mitochondrial gene cytochrome oxidase I (COI) of recently collected specimens. Results revealed the lack of distinguishing characters between <i>C. bocainensis</i> and <i>C. dochmia</i> supported by the molecular analysis, where the overlap of intra- and interspecific genetic divergences suggested genetic flow among individuals. <i>Campylocia burmeisteri</i> is revalidated as a senior synonym of Brazilian south-eastern species <i>C. bocainensis</i> and <i>C. dochmia</i> and of <i>E. guntheri</i>, formerly a synonym of <i>C. anceps</i>. <i>Campylocia burmeisteri</i> is redescribed based on material from its type-locality, Nova Friburgo, Rio de Janeiro State. Two new species, <i>C. demoulini</i> sp. nov. and <i>C. araca</i> sp. nov., are described from the Amazon rain forest and a third species, <i>C. orosi</i> sp. nov., is described from Costa Rica. Possible cryptic species and the utility of egg morphology in the taxonomy of <i>Campylocia</i> are discussed for the first time for the genus. A key to the identification of adult stages of <i>Campylocia</i> is provided based on male genitalia and egg morphologyhttp://zoobank.org/urn:lsid:zoobank.org:pub:6779DC2C-DB98-41DF-8C52-FF97366AAF7A
DOI: 10.6084/m9.figshare.4729639
title: Data_survey.xlsx

description: This file contains the responses from 135 teachers to the questionnaire for measuring teachers' attitudes toward teaching integrated STEM. The meaning of the item codes can be found in the accompanying document.
DOI: 10.6084/m9.figshare.4729675.v1
title: Integrative taxonomic revision of <i>Campylocia</i> (mayflies: Ephemeroptera, Euthyplociidae)

description: A morphological comparison of type and non-type material of species of <i>Campylocia</i>, including their junior synonyms, was conducted, in addition to neighbour joining based on K2P distances and Bayesian inference analyses of 376 bp of the mitochondrial gene cytochrome oxidase I (COI) of recently collected specimens. Results revealed the lack of distinguishing characters between <i>C. bocainensis</i> and <i>C. dochmia</i> supported by the molecular analysis, where the overlap of intra- and interspecific genetic divergences suggested genetic flow among individuals. <i>Campylocia burmeisteri</i> is revalidated as a senior synonym of Brazilian south-eastern species <i>C. bocainensis</i> and <i>C. dochmia</i> and of <i>E. guntheri</i>, formerly a synonym of <i>C. anceps</i>. <i>Campylocia burmeisteri</i> is redescribed based on material from its type-locality, Nova Friburgo, Rio de Janeiro State. Two new species, <i>C. demoulini</i> sp. nov. and <i>C. araca</i> sp. nov., are described from the Amazon rain forest and a third species, <i>C. orosi</i> sp. nov., is described from Costa Rica. Possible cryptic species and the utility of egg morphology in the taxonomy of <i>Campylocia</i> are discussed for the first time for the genus. A key to the identification of adult stages of <i>Campylocia</i> is provided based on male genitalia and egg morphologyhttp://zoobank.org/urn:lsid:zoobank.org:pub:6779DC2C-DB98-41DF-8C52-FF97366AAF7A
DOI: 10.6084/m9.figshare.4729627
title: Knotting task execution based a hand-rope relation

description: In this paper, we focus on relationship between the rope and fingers to implement a knot and estimate error occurred during execution of knotting task. In the previous work, the authors have proposed a method for making various knots from synthesis of basic operations called skills that are derived from analyzing the knotting processes. Each individual skill has an operation to handle the rope and conditions for executing and completing the task skill. By combining these skills, we can make the whole knotting process robust. In this paper, the ‘relations’, which describe the positions of the rope relative to the fingers, found from the successful cases, using the teaching data, were defined as the conditions of the task skills. Relation of rope and fingers at a specific state is presented by using propositional variables and logical connectives. Knotting skills were constructed to be executed robustly using the detected conditions. Occurrence of an error is estimated by finding out an abnormal relation. In this case, a corrective action can be inserted to modify the position of contact points, which are relative to the unsatisfied conditions to satisfy the detected conditions; therefore, skill execution is more reliable. We confirm the effectiveness of the methods through experiments.
DOI: 10.6084/m9.figshare.4729630
title: Quantitative changes in the protein and miRNA cargo of plasma exosome-like vesicles after exposure to ionizing radiation

description: <b>Purpose:</b> Multiple cell types secrete exosome-like extracellular vesicles (ELVs) to the extracellular environment. Pathological conditions can produce characteristic changes to the vesicle cargo. We investigated if ionizing radiation is capable of inducing changes in the protein and microRNA (miRNA) cargo of ELVs. <b>Materials and methods:</b> Whole blood samples from healthy donors were irradiated with 2 Gy gamma rays and then peripheral blood mononuclear cells and plasma were separated from residual blood and co-cultivated for 24 h. The released ELVs were collected by differential ultracentrifugation from irradiated and non-irradiated samples. microRNAs and proteins were quantified by qPCR and label-free proteomics. <b>Results:</b> Here we report a first characterization of radiation-induced changes in the protein and miRNA cargo of ELVs isolated from plasma. Proteome analysis of ELVs identified 214 proteins, of which nine significantly changed their abundance after irradiation. The radiation-induced down-regulation of afamin and serpine peptidase F1 was confirmed by immunoblotting. miRNA expression profiling identified 58 different exosomal miRNAs, the expression of miR-204-5p, miR-92a-3p and miR-31-5p was significantly increased in ELVs from irradiated samples. <b>Conclusions:</b> This study provides evidence that radiation-induced changes occur in the protein and miRNA cargo of plasma ELVs. These data imply a novel systemic communication pathway between irradiated and non-irradiated cells and tissues.