cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7488/ds/103
title: IRI-Scotland academic author survey

description: IRIS academic author survey pt1: Survey Overview. Number of respondents: 488 Expected number of respondents: 500 Response rate: 97.6% Launch date: 15 Mar 2006 Close date: 25 Apr 2006 IRIS academic author survey pt2: Survey Overview. Number of respondents: 53 Expected number of respondents: 50 Response rate: 106.0% Launch date: 19 May 2006 Close date: 28 May 2006
description: The IRI-Scotland project (http://www.iriscotland.lib.ed.ac.uk/) carried out a series of online questionnaires in 2006 to assess the attitudes towards open access and institutional repositories within the higher education community in Scotland. In total, three questionnaires were targeted at different stakeholder groups within the community - academic authors, technical staff responsible for repository development, and senior management from academic libraries. For logistical reasons the first survey was undertaken during two different time periods and was aimed at academic authors from the following higher education institutions in Scotland; Abertay University, Dundee University , Edinburgh College of Art, Edinburgh University, Glasgow University, Glasgow Caledonian, Heriot Watt University, Robert Gordon University, St Andrews University, Stirling University, Strathclyde University, University of Aberdeen, University of Dundee, and University of Paisley. Library or Information services staff arranged for an email to be sent to as many research staff as possible from the target community. We present here anonymous data from the two parts of the academic author survey in comma separated value format.
DOI: 10.7488/ds/314
title: Gravitational collapse of depletion-induced colloidal gels

description: We study the ageing and ultimate gravitational collapse of colloidal gels in which the interparticle attraction is induced by non-adsorbing polymers via the depletion effect. The gels are formed through arrested spinodal decomposition, whereby the dense phase arrests into an attractive glass. We map the experimental state diagram onto a theoretical one obtained from computer simulations and theoretical calculations. Discrepancies between the experimental and simulated gel regions in the state diagram can be explained by the particle size and density dependence of the boundary below which the gel is not strong enough to resist gravitational stress. Visual observations show that gravitational collapse of the gels concentrations showing the onset of rapid collapse after a delay time. Magnetic resonance imaging (MRI) was used to provide quantitative, spatio-temporally resolved measurements of the solid volume fraction in these rapidly collapsing gels. We find that during the delay time, a dense region builds up at the top of the falls into two distinct regimes as the colloid and polymer concentrations are varied, with gels at low colloid sample. The rapid collapse is initiated when the gel structure is no longer able to support this dense layer.
DOI: 10.7488/ds/1973
title: East Anglia Medieval Fenlands Economic Wealth

description: Darby (1969, 1974) describes the economic geography of East Anglia from the 1087 Domesday census, and the 1327-34 and the 1640-1641 Subsidy tax assessments. The switch of wealth from the Uplands in the north and south, to the Lowlands in the centre, is illustrated through 55 map figures. Some are re-created here as thematic maps, using Ordnance Survey OpenData released last month under a creative commons attribution licence , with no restriction to re-use derived data. HC Darby map data keyed by A Zolnai to OS OpenData Boundary Line county shape files. GIS vector data. This dataset was first accessioned in the EDINA ShareGeo Open repository on 2011-03-25 and migrated to Edinburgh DataShare on 2017-02-22.
description: ESRI Shapefile
DOI: 10.7488/ds/2045
title: The Delicate Business of Identity full transcripts

description: The dataset consists of extracts from interviews that were conducted in Arabic with Syrian people, which were transcribed using Jefferson (2004) notation, transliterated, and translated. Identity has often been approached by asking questions about it in interviews. However, speakers sometimes reject, resist or modify category membership because of the sensitive inferential and interactional issues invoked. This article aims to provide a systematic analysis of category-eliciting question–answer (Q-A) sequences from a large corpus of Syrian interview data concerning several identities. Using conversation and membership categorisation analysis, four Q-A sequences are identified: minimal confirmation of questions seeking the hearably demographic fact of membership; modifying membership claims in response to factual-type questions by rejecting some not other category-bound attributes; characterising membership as fact and nominating an alternative identity in response to questions about feelings; and, in response to questions seeking confirmation of a category implicated through the prior talk, warranting the denial of membership. The analysis therefore highlights a paradox: asking direct questions about category membership is used to generate talk about the topic of identity that would be difficult to collect otherwise, but this may in turn provide for a reluctance to self-identify, thus making identity a delicate business. The paper, entitled The Delicate Business of Identity is due to be published in Discourse Studies in August.
DOI: 10.7488/ds/1315
title: Listening test materials for "Smooth Talking: Articulatory Join Costs for Unit Selection"

description: This is the listening test data for the experiment presented in the ICASSP 2016 paper "Smooth Talking: Articulatory Join Costs for Unit Selection", which proposes and evaluates computation of unit selection join costs in the articulatory domain. Join cost calculation has so far dealt exclusively with acoustic speech parameters, and a large number of distance metrics have previously been tested in conjunction with a wide variety of acoustic parameterisations. In contrast, we propose here to calculate distance in articulatory space. The motivation for this is simple: physical constraints mean a human talker's mouth cannot ``jump'' from one configuration to a different one, so smooth evolution of articulator positions would also seem desirable for a good candidate unit sequence. To test this, we built Festival Multisyn voices using a large articulatory-acoustic dataset. We first synthesised 460 TIMIT sentences and confirmed our articulatory join cost gives appreciably different unit sequences compared to the standard Multisyn acoustic join cost. A listening test (3 sets of 25 sentence pairs, 30 listeners) then showed our articulatory cost is preferred at a rate of 58% compared to the standard Multisyn acoustic join cost.
description: ./README =&gt; short description of dataset ./stimuli/ =&gt; utterances (used in listening test) synthesised by 3 unit selection voices ./responses/ =&gt; listener responses for 3 preference tests
DOI: 10.7488/ds/1974
title: UK Fire Service Areas

description: Fire Service Areas is a set of boundaries for the operating areas of statutory fire and rescue authorities in the United Kingdom and the Crown dependencies. Boundaries for England, Scotland and Wales have been derived from Ordnance Survey administrative data. Boundaries for Northern Ireland, the Isle of Man and the Channel Islands have been digitised separately. The dataset has been attributed with ONS and NISRA statistical codes. Supplied by Owen Boswarva. Data released under an open licence that incorporates OS OpenData and Open Government Licence terms (see licence.pdf enclosed with data). GIS vector data. This dataset was first accessioned in the EDINA ShareGeo Open repository on 2013-03-07 and migrated to Edinburgh DataShare on 2017-02-22.
description: ESRI Shapefile
DOI: 10.7488/ds/1975
title: Sitefinder Mobile Phone Base Station Database

description: The Sitefinder dataset contains point locations for mobile phone base stations in the UK. The dataset was released by Ofcom in March 2013 at the end of an extremely protracted legal battle for public release of the data under the Environmental Information Regulations. While this dataset is the most comprehensive publicly available record of base station locations, some of the information is incomplete and/or out of date. Please see the notes enclosed with the data. The raw data was publicly released by Ofcom as a .xlsx spreadsheet on the Sitefinder website, and includes British National Grid and Irish Grid references. The copy available here is in shapefile and csv formats with WGS84 latitude and longitude coordinates added by Owen Boswarva. Please see the enclosed !ReadMe.txt file for notes on licensing and re-use of the dataset. GIS vector data. This dataset was first accessioned in the EDINA ShareGeo Open repository on 2013-04-04 and migrated to Edinburgh DataShare on 2017-02-22.
description: ESRI Shapefile
DOI: 10.7488/ds/1571
title: EEMBC Benchmark Suite Simulations

description: This dataset contains gem5 simulation results and McPAT power consumption figures for 3000 out-of-order CPU cores running EEMBC DENBench (digital entertainment) and Networking 2.0 benchmarks. The benchmarks have been compiled for the ARM ISA and have been simulated for 1 billion instructions or until completion. See the README.txt file for details. Note that the source code of the benchmarks and the compiled binaries are NOT included due to licensing restrictions.
description: See the included README.txt
DOI: 10.7488/ds/1584
title: SPEC 2006 Integer Benchmark Suite Simulations

description: This dataset contains gem5 simulation results and McPAT power consumption figures for 3000 out-of-order CPU cores running SPEC 2006 integer benchmarks. The benchmarks have been compiled for the ARM ISA and have been simulated for 1 billion instructions or until completion. See the README.txt file for details. Note that the source code of the benchmarks and the compiled binaries are NOT included due to licensing restrictions.
description: See the included README.txt
DOI: 10.7488/ds/1589
title: EEMBC FPMark Benchmark Suite Simulations

description: This dataset contains gem5 simulation results and McPAT power consumption figures for 3000 out-of-order CPU cores running EEMBC FPMark benchmarks. The benchmarks have been compiled for the ARM ISA and have been simulated for 1 billion instructions or until completion. See the README.txt file for details. Note that the source code of the benchmarks and the compiled binaries are NOT included due to licensing restrictions.
description: See the included README.txt
DOI: 10.7488/ds/2039
title: Data from the paper "Zipf's Law of Abbreviation and the Principle of Least Effort: Language users optimise a miniature lexicon for efficient communication"

description: This is the full set of experimental data described in the paper: "Zipf's Law of Abbreviation and the Principle of Least Effort: Language users optimise a miniature lexicon for efficient communication" (2017), by Jasmeen Kanwal, Kenny Smith, Jennifer Culbertson, and Simon Kirby, published in Cognition. Data consists of .csv files containing button press information from director trials in each of 4 experimental conditions. A description of the columns in the .csv files is provided in the Readme.txt file.
description: See Readme.txt.
DOI: 10.7488/ds/2310
title: A Parsed Linguistic Atlas of Early Middle English

description: A parsed version of part of the Linguistic Atlas of Early Middle English (LAEME), annotated in the format of the Penn Parsed Corpora of Historical English. Contains 68 texts (172,624 words), representing one version of each text of &gt;100 words from 1250-1325 included in LAEME. # Software note # .psd files to be read with CorpusSearch software, grep or text editor such as Notepad. See "README" file for details.
description: * "README.md": README file; * "PLAEME_texts.csv": Summary information on all text files; * "psd.zip": Compressed text files in .psd format.
DOI: 10.7488/ds/1561
title: [SUPERSEDED] Heating and cooling degree days projections for the UK: version 1

description: [Dataset has been replaced by a newer version - http://datashare.is.ed.ac.uk/handle/10283/2813] This dataset was produced for the study "What is the uncertainty in degree day projections due to different calibration methodologies?" (Holmes et al, 2016, Journal of Climate, submitted). Heating and Cooling degree day projections are calculated using various different calibration strategies, on a month-by-month basis and on the 25km grid of the HadRM3-PPE model projections. The software used to produce the NetCDF data was IDL. A list of software for viewing and analysing NetCDF files is available at http://www.unidata.ucar.edu/software/netcdf/software.html . The dataset used the raw data from HadRM3-PPE (http://catalogue.ceda.ac.uk/uuid/f9c7d70b0e6d4c31c067e75ab67cb3cc) and EObs version 12 (http://www.ecad.eu/download/ensembles/download.php).
DOI: 10.7488/ds/2368
title: Data set for "Fluid Age-based Analysis of a Lifted Turbulent DME Jet Flame DNS"

description: The link between the distribution of fluid residence time and the distribution of reactive scalars is analysed using Direct Numerical Simulation data. Information about the reactive scalar distribution is needed in order to model the reaction terms that appear in Large Eddy and Reynolds-Averaged simulations of turbulent reacting flows. The lifted flame is simulated taking account of multi-step chemistry for dimethyl-ether fuel. Due to autoignition and flame propagation, the reaction progress increases with residence time. The variation of fluid residence time is evaluated by solving an Eulerian transport equation for the fluid age. The fluid age is a passive scalar with a spatially-uniform source term, meaning that its moments and dissipation rates in turbulent flows can be modelled using closures already established for conserved scalars such as mixture fraction. In combination with the mixture fraction, the fluid age serves as a useful mapping variable to distinguish younger less-reacted fluid near the inlet from older more-reacted fluid downstream. The local fluctuations of mixture fraction and fluid age have strong negative correlation and, building upon established presumed-pdf models for mixture fraction, this feature can be used to construct an accurate presumed-pdf model for the joint mixture fraction/fluid age pdf. It is demonstrated that the double-conditional first-order moment closure combined with the proposed presumed model for the joint pdf of mixture fraction and fluid age gives accurate predictions for unconditional reaction rates – both for pre-ignition radical species produced by low-temperature processes upstream of the flame base, and for major species that are produced at the flame front.
DOI: 10.7488/ds/2065
title: Additional files for 'Comparison of the protein-coding genomes of three deep-sea, sulfur-oxidising bacteria: "Candidatus Ruthia magnifica", "Candidatus Vesicomyosocius okutanii" and Thiomicrospira crunogena'

description: Genome-wide protein sets input to OrthoMCL, OrthoMCL output, Perl script to count cross-species occurence of OrthoMCL groups, and output of Perl script, as used by McGill and Barker (2017, BMC Research Notes 10:296, doi:10.1186/s13104-017-2598-5).
description: * fasta_files.zip: Genome-wide protein sets, in FASTA format, for "Candidatus Ruthia magnifica" strain Cm (magnificapep.fa), "Candidatus Vesicomyosocius okutanii" HA (okutaniipep.fa) and Thiomicrospira crunogena XCL-2 (crunogenapep.fa). These files were downloaded from the Ensembl Genomes database (http://ensemblgenomes.org). * group_count.zip: - groups_1.4.txt is a text file containing output of OrthoMCL for the three protein sets in fasta_files.zip, with an OrthoMCL inflation parameter of 1.4. Taxon abbreviations are MAG ("Candidatus Ruthia magnifica"), CRU ("Candidatus Ruthia magnifica") and OKU ("Candidatus Vesicomyosocius okutanii"). - group_count_script.pl is the Perl script used to post-process OrthoMCL output, counting groups across the three taxa. - groups1.4_output.txt is a text file, containing the final output of group_count_script.pl.
DOI: 10.7488/ds/2289
title: Raw DFT data for "Post-aragonite phases of CaCO3 at lower mantle pressures"

description: This dataset contains DFT enthalpies and phonon spectra, computed with PBEsol, that together produce the theoretical static, and P-T quasiharmonic phase diagrams seen in the paper "Post-aragonite phases of CaCO3 at lower mantle pressures".
DOI: 10.7488/ds/2130
title: Heating and Cooling Degree Day projections for the UK: version 2

description: NOTE: This dataset replaces version 1 of the same time, which has an error in the fields Hbc,Cbc,Hdelta and Cdelta. This dataset was produced for the study "What is the uncertainty in degree day projections due to different calibration methodologies?" (Holmes et al, 2017, Journal of Climate). Heating and Cooling degree day projections are calculated using various different calibration strategies, on a month-by-month basis and on the 25km grid of the HadRM3-PPE model projections.
description: Degree days are calculated from temperature data from HadRM3-PPE (http://catalogue.ceda.ac.uk/uuid/f9c7d70b0e6d4c31c067e75ab67cb3cc) and EObs version 12 (http://www.ecad.eu/download/ensembles/download.php). NetCDF files were created using IDL. A list of software for viewing and analysing NetCDF files is available at http://www.unidata.ucar.edu/software/netcdf/software.html . Information regarding variables in netcdf file: Variables are 30 year climatologies for each calendar month, and take names H* for heating degree days and C* for cooling degree days, as follows:- HObs, Cobs: HDD and CDD calculated from observed daily temperatures in historical period 1981-2010. // Hppe, Cppe: HDD and CDD calculated from HadRM3-PPE daily temperatures in historical period. // Hfut, Cfut: HDD and CDD calculated from HadRM3-PPE daily temperatures in future period (2040-2069) with no correction. // HdelI, CdelI: HDD and CDD projections for future period calculated by the additive index correction method, whereby the model bias in the index from the historical period is removed from the projected value. // HdelIPROP, CdelIPROP: HDD and CDD projections for future period calculated by the proportional index correction method, whereby the raw projected value is divided by the historical proportional bias. // Hbc, Cbc: HDD and CDD projections for future period, calculated by the underlying bias correction method: the projected temperature time series is mean- and variance- corrected. HDD and CDD are calculated from the corrected series. // Hdelta, Cdelta: HDD and CDD projections for future period, calculated byt the underlying change method: the historical observed temperature time series is variance- and mean- mapped according to the change projected by the model. HDD and CDD are calculated from the projected series. // For more detail, see publication.
DOI: 10.7488/ds/2244
title: Setting up the correspondence analysis

description: The HTML-document takes the reader through the process of creating a unigram correspondence analysis with "R"; the accompanying .csv files provide the input. This documentation accompanies the forthcoming publication: Los, B., & Lubbers, T. (submitted). Syntax, text-type, genre and authorial voice in Old English: A data-driven approach. In K. Bech, & R. Möhlig-Falke (Eds.), Grammar – Discourse – Context: Widening the Horizon for a Theory of Grammatical Change. (Discourse Patterns). Berlin: Mouton de Gruyter.
DOI: 10.7488/ds/2292
title: Unique placeholder IDs for each gene, transcript and exon model in the "UMD CASPUR WD 2.0" annotation of the water buffalo (Bubalis bubalis) genome assembly

description: The "UMD CASPUR WD 2.0" annotation of the water buffalo (Bubalis bubalis) genome assembly, as published by Williams, et al. (PMCID: PMC5737279), does not yet have a standardised set of placeholder IDs for each gene, transcript and exon model. We used the transcripts from this assembly as the basis of a large-scale gene-level expression atlas for the water buffalo. To aid in the presentation of findings, we assigned - where unavailable - placeholder IDs to all gene, transcript and exon models of this annotation. This dataset comprises this standard nomenclature, alongside coordinates of each gene, transcript and exon.
DOI: 10.7488/ds/2840
title: Survey "Profesionales que entregan la PAE"

description: Survey regarding provision of Emergency Contraception in Chile in 2010 among medical professionals. The survey data, and example survey are in Spanish.
description: See Readme file for information
DOI: 10.7488/ds/2366
title: Synaptome data with individual synapse parameters, types and subtypes across the 5 coronal mouse brain sections
title: Synaptome architecture of the mouse brain reveals roles for synapse diversity in the connectome and in cognition.

description: Synapses are found in vast numbers in the brain and contain complex proteomes. We developed genetic labeling and imaging methods to examine synaptic proteins in individual excitatory synapses across all regions of the mouse brain. Synapse catalogs were generated from the molecular and morphological features of 0.5 billion synapses. Each synapse subtype showed a unique anatomical distribution and each brain region showed a distinct signature of synapse subtypes. Whole brain synaptome maps revealed spatial architecture from dendritic to global systems levels and previously unknown anatomical features. Synaptome mapping of circuits showed correspondence between synapse diversity and structural and functional connectomes. Behaviorally relevant patterns of neuronal activity trigger spatio-temporal postsynaptic responses sensitive to the structure of synaptome maps. Areas controlling higher cognitive function contain greatest synapse diversity and mutations causing cognitive disorders reorganized synaptome maps. Synaptome mapping technology and resources have wide application in studies of the normal and diseased brain.
DOI: 10.7488/ds/2910
title: Pervasive lesion segregation shapes cancer genome evolution

description: Cancers arise through the acquisition of oncogenic mutations and grow by clonal expansion. Here we reveal that most mutagenic DNA lesions are not resolved into a mutated DNA base pair within a single cell cycle. Instead, DNA lesions segregate, unrepaired, into daughter cells for multiple cell generations, resulting in the chromosome-scale phasing of subsequent mutations. We characterize this process in mutagen-induced mouse liver tumours and show that DNA replication across persisting lesions can produce multiple alternative alleles in successive cell divisions, thereby generating both multiallelic and combinatorial genetic diversity. The phasing of lesions enables accurate measurement of strand-biased repair processes, quantification of oncogenic selection and fine mapping of sister-chromatid-exchange events. Finally, we demonstrate that lesion segregation is a unifying property of exogenous mutagens, including UV light and chemotherapy agents in human cells and tumours, which has profound implications for the evolution and adaptation of cancer genomes. The data submitted here is analysis output based on primary data submitted to the EBI under the indicated accession PRJEB37808.
description: See README.txt file in data submission for a description of the data.