cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/csn22g48w3.1
title: Consequences of trace metal cocktail exposure in zebra finch (Taeniopygia guttata) and effect of calcium supplementation

description: Trace metal elements are significant stressors in urban areas. Their harmful effects on physiological parameters are demonstrated, but current laboratory studies are not representative of wild chronic exposure to a trace metal cocktail. Calcium can reduce the accumulation and toxicity of several metals, but soil acidification in cities leads to a decrease in bioavailability of this element. The objective of this study was to investigate the accumulation and toxicity of a trace metal cocktail representative of urban exposure on passerine birds, and test the importance of calcium availability on these toxic effects. We exposed zebra finches (Taeniopygia guttata) to a cocktail of metals and metalloids in drinking water, with or without calcium supplementation. We monitored the concentration of metals in the blood and feathers, and their effects on oxidative status, and telomere length. The metal cocktail led to higher concentration of all elements in the feathers, and of arsenic and lead in the blood. Birds with a higher concentration of cadmium, arsenic and lead in the feathers had shorter telomeres, but no impact of the cocktail was detected on the oxidative status. Birds of the ‘calcium’ group and the ‘calcium and metal’ group accumulated higher concentrations of zinc, chromium and nickel in feathers. The ‘calcium and metal’ group also accumulated lower concentrations of arsenic and lead in feathers compared to the ‘metal’ group. Our results suggests that chronic exposure to a cocktail of metals at low concentrations has deleterious effects on birds, which can be limited through calcium intake. Methods 4 groups of 10 birds were exposed to 4 treatments: 'Ctrl’= control group with low-Ca diet and no trace metal element (TME), ‘TME’= birds with low–Ca diet exposed to a TME cocktail, ‘Ca’= rich-Ca diet and no TME and ‘TME+Ca’= rich-Ca diet and TME cocktail. The TME cocktail contained both essential TME (i.e, necessary for biological process) and non-essential metals and metalloid: 10 ppm of Pb , 0.7 ppm of Cr, 1 ppm of As, 100 ppm of Zn, 24 ppm of Cu, 0.5 ppm of Ni, 0.2 ppm of Co, and 0.1 ppm of Cd. At day 0, tarsus length was measured with a calliper (±0.1 mm). Every two weeks we measured body mass (±0.1 g) with a precision scale and collected 100 µL of blood from brachial vein (in 2 tubes of 50 µL) with heparinized capillary to measure physiological parameters (free, oxidised and total glutathione, glutahione peroxidase activity, dosage of reactive oxygen metabolites, and relative telomere length) and concentrations of metals (ICP-MS analyses). At day 0 and 29 we also collected the right fourth primary feather for metal analyses (ICP-MS analyses). For blood, several samples had metal concentrations under the limit of detection. To take these data into account, we used a statistical method for left censored data with a specific package : NADA package which requires pre-processing of data. It corresponds to the last 16 columns of this file.
DOI: 10.5281/zenodo.3902905
title: Wikidata Dump wake_dump_rus

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.3902904
title: Wikidata Dump wake_dump_rus

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.3903253
title: US Births Dataset

description: This dataset contains a single very long daily time series representing the number of births in US from 01/01/1969 to 31/12/1988. It was extracted from R mosaicData package. The length of this time series is 7305.
description: {"references": ["Pruim, R., Kaplan, D., Horton, N., 2020. mosaicData: project mosaic data sets. R package version 0.18.0. https://CRAN.R-project.org/package=mosaicData"]}
DOI: 10.5281/zenodo.3903233
title: Electricity Demand (Elecdemand) Dataset

description: This dataset contains a single very long time series representing the half hourly electricity demand For Victoria, Australia in 2014. It was extracted from R fpp2 package. The length of this time series is 17520.
description: {"references": ["Hyndman, R., 2018. fpp2: Data for Forecasting: Principles and Practice (2nd Edition). R package version 2.3. https://CRAN.R-project.org/package=fpp2"]}
DOI: 10.5281/zenodo.3903238
title: Saugeen River Flow (SaugeenDay) Dataset

description: This dataset contains a single very long time series representing the daily mean flow of the Saugeen River at Walkerton in cubic meters per second from 01/01/1915 to 31/12/1979. It was extracted from R deseasonalize package. The length of this time series is 23741.
description: {"references": ["McLeod, A. I., Gweon, H., 2012. Optimal deseasonalization for monthly and daily geophysical time series. Journal of environmental statistics 4 (11). URL http://www.jenvstat.org/v04/i11", "McLeod, A. I., Gweon, H., 2013. deseasonalize: optimal deseasonalization for geophysical time series using AR fitting. R package version 1.35 https://CRAN.R-project.org/package=deseasonalize"]}
DOI: 10.5281/zenodo.3903298
title: Carbon and oxygen isotope values of bulk carbonates for Castellas Fault zone and D19 fault zones, La Fare anticline (SE France).

description: Carbon and oxygen isotope values of bulk carbonates for Castellas Fault zone and D19 fault zones, La Fare anticline (SE France). <strong>B</strong>: bulk measurement; <strong>M</strong>: micrite value; <strong>C1, C3, C4,</strong> and <strong>C5</strong>: cement isotopic value; <strong>FR</strong>: fault rock isotopic value. To determine stable carbon and oxygen isotopes (<sup>13</sup>C and <sup>18</sup>O), 204 microsamples (&lt; 5 mg) were drilled, 194 of them were micro-drilled from polished thin sections with an 80 μm diameter micro-sampler (Merkantec Micromill) at VU 15 Amsterdam (the Netherlands). We micro-sampled bulk rocks (57), sparitic cements (101), fault rocks (9) and micrite (27). The bulk rock values are related to a nonselective sampling giving information on the whole-rock isotopic values. These values do not capture the signature of isolated cement (Swart, 2015). Carbon and oxygen isotopic values were acquired with Thermo Finnigan DeltaCmass spectrometer equipped with a GasBench preparation device at VU Amsterdam. The internationally used standard IAEA-603, with official values of +2.46‰for <sup>13</sup>C and -2:37‰for <sup>18</sup>O, is 25 measured as a control standard. The standard deviation (SD) of the measurements is, respectively, &lt; 0:1‰ and &lt; 0:2‰ for <sup>13</sup>C and <sup>18</sup>O. Ten whole-rock samples were analyzed using a GasBench II connected to a Thermo Fisher Delta V Plus mass spectrometer at the FAU University (Erlangen, 30 Germany). Measurements were calibrated by assigning <sup>13</sup>C values of +1:95‰ to NBS19 and -47:3‰ to IAEA-CO9 and <sup>18</sup>O values of -2:20‰ to NBS19. All values are reported<br> in per mil relative to V-PDB.
DOI: 10.5281/zenodo.3903297
title: Carbon and oxygen isotope values of bulk carbonates for Castellas Fault zone and D19 fault zones, La Fare anticline (SE France).

description: Carbon and oxygen isotope values of bulk carbonates for Castellas Fault zone and D19 fault zones, La Fare anticline (SE France). <strong>B</strong>: bulk measurement; <strong>M</strong>: micrite value; <strong>C1, C3, C4,</strong> and <strong>C5</strong>: cement isotopic value; <strong>FR</strong>: fault rock isotopic value. To determine stable carbon and oxygen isotopes (<sup>13</sup>C and <sup>18</sup>O), 204 microsamples (&lt; 5 mg) were drilled, 194 of them were micro-drilled from polished thin sections with an 80 μm diameter micro-sampler (Merkantec Micromill) at VU 15 Amsterdam (the Netherlands). We micro-sampled bulk rocks (57), sparitic cements (101), fault rocks (9) and micrite (27). The bulk rock values are related to a nonselective sampling giving information on the whole-rock isotopic values. These values do not capture the signature of isolated cement (Swart, 2015). Carbon and oxygen isotopic values were acquired with Thermo Finnigan DeltaCmass spectrometer equipped with a GasBench preparation device at VU Amsterdam. The internationally used standard IAEA-603, with official values of +2.46‰for <sup>13</sup>C and -2:37‰for <sup>18</sup>O, is 25 measured as a control standard. The standard deviation (SD) of the measurements is, respectively, &lt; 0:1‰ and &lt; 0:2‰ for <sup>13</sup>C and <sup>18</sup>O. Ten whole-rock samples were analyzed using a GasBench II connected to a Thermo Fisher Delta V Plus mass spectrometer at the FAU University (Erlangen, 30 Germany). Measurements were calibrated by assigning <sup>13</sup>C values of +1:95‰ to NBS19 and -47:3‰ to IAEA-CO9 and <sup>18</sup>O values of -2:20‰ to NBS19. All values are reported<br> in per mil relative to V-PDB.
DOI: 10.21227/beyq-4041
title: Urban Semantic 3D Dataset

description: This dataset extends the Urban Semantic 3D (US3D) dataset developed and first released for the 2019 IEEE GRSS Data Fusion Contest (DFC19). We provide additional geographic tiles to supplement the DFC19 training data and also new data for each tile to enable training and validation of models to predict geocentric pose, defined as an object's height above ground and orientation with respect to gravity. We also add to the DFC19 data from Jacksonville, Florida and Omaha, Nebraska with new geographic tiles from Atlanta, Georgia.
DOI: 10.5281/zenodo.3898554
title: E-NVH Benchmark - Tooth Frequency Response Functions

description: This dataset contains the tooth frequency response functions (TFRF) characterizing the response of an electric motor stator to the magnetic force excitation. The TFRF consists in loading a single tooth with a single load vector and measuring the response on the external yoke. However, for practical reasons, the experimental Tooth FRF are obtained by reciprocity, by impacting the external yoke with an impact hammer and measuring the tooth response with an accelerometer normalized by the injected force.
DOI: 10.5281/zenodo.3903339
title: Concordance of Bodhgaya sculptures and Cunningham photographic archive

description: Concordance of Bodhgaya sculptures published by A. K. Coomaraswamy and the photographs in the Cunningham archive held by the British Museum.
description: {"references": ["A. K. Coomaraswamy, La Sculpture De Bodhgaya (Ars Asiatica, XVIII). Coomaraswamy, Ananda K. Paris: Les \u00c9ditions d'Art et d'Histoire, 1935"]}
DOI: 10.5281/zenodo.3903344
title: Concordance of Bodhgaya sculptures and Cunningham photographic archive

description: Concordance of Bodhgaya sculptures published by A. K. Coomaraswamy and the photographs in the Cunningham archive held by the British Museum.
description: Version 1: Excel sheet; Version 2: Ready reference PDF.
description: {"references": ["A. K. Coomaraswamy, La Sculpture De Bodhgaya (Ars Asiatica, XVIII). Coomaraswamy, Ananda K. Paris: Les \u00c9ditions d'Art et d'Histoire, 1935"]}
DOI: 10.5281/zenodo.3903338
title: Concordance of Bodhgaya sculptures and Cunningham photographic archive

description: Concordance of Bodhgaya sculptures published by A. K. Coomaraswamy and the photographs in the Cunningham archive held by the British Museum.
description: Version 1: Excel sheet; Version 2: Ready reference PDF.
description: {"references": ["A. K. Coomaraswamy, La Sculpture De Bodhgaya (Ars Asiatica, XVIII). Coomaraswamy, Ananda K. Paris: Les \u00c9ditions d'Art et d'Histoire, 1935"]}
DOI: 10.21227/pp2r-n925
title: 300-Dimensional Word Embeddings for Nepali Language

description: This pre-trained Word2Vec model has 300-dimensional vectors for more than 0.5 million Nepali words and phrases. A separate Nepali language text corpus was created using the news contents freely available in the public domain. The text corpus contained more than 90 million running words. The "Nepali Text Corpus" can be accessed freely from https://ieee-dataport.org/open-access/nepali-text-corpus.Word2Vec model details: Embeddings Dimension: 300, Architecture: Continuous - BOW, Training algorithm: Negative sampling = 15, Context (window) size: 10, Token minimum count: 2, Encoded in UTF-8.
DOI: 10.21227/2nxv-0v44
title: 300-Dimensional Word Embeddings for Nepali Language

description: This pre-trained Word2Vec model has 300-dimensional vectors for more than 0.5 million Nepali words and phrases. A separate Nepali language text corpus was created using the news contents freely available in the public domain. The text corpus contained more than 90 million running words. The "Nepali Text Corpus" can be accessed freely from https://ieee-dataport.org/open-access/nepali-text-corpus.Word2Vec model details: Embeddings Dimension: 300, Architecture: Continuous - BOW, Training algorithm: Negative sampling = 15, Context (window) size: 10, Token minimum count: 2, Encoded in UTF-8.
DOI: 10.21227/ny67-a533
title: 300-Dimensional Word Embeddings for Nepali Language

description: This pre-trained Word2Vec model has 300-dimensional vectors for more than 0.5 million Nepali words and phrases. A separate Nepali language text corpus was created using the news contents freely available in the public domain. The text corpus contained more than 90 million running words. The "Nepali Text Corpus" can be accessed freely from http://dx.doi.org/10.21227/jxrd-d245.Word2Vec model details: Embeddings Dimension: 300, Architecture: Continuous - BOW, Training algorithm: Negative sampling = 15, Context (window) size: 10, Token minimum count: 2, Encoded in UTF-8.
DOI: 10.5281/zenodo.2605302
title: Annotation of Phytozome V12 protein plant sequences using the ragp pipeline for hydroxyproline-rich glycoprotein mining

description: Hydroxyproline aware annotation of hydroxyproline-rich glycoprotein (HRGP) sequences was performed on sequence data from 62 plant proteomes obtained from Phytozome database (https://phytozome.jgi.doe.gov/pz/portal.html, version 12) using the ragp R package (https://github.com/missuse/ragp, version 0.3.0.0001). In each archive a single comma separated value table (.csv) is present along with a README.txt file describing the contents of the corresponding .csv file. The archives are: - phytozome_V12.tar.gz - sequences from 62 plant proteomes (phytozome V12) with a total of 2797062 protein sequences. - phytozome_V12_phobius.tar.gz -<strong> </strong> Signal peptide prediction using Phobius (http://phobius.sbc.su.se/) on sequences present in phytozome_V12.tar.gz. - phytozome_V12_signalp.tar.gz -<strong> </strong> Signal peptide prediction using SignalP 4.1 (http://www.cbs.dtu.dk/services/SignalP-4.1/) on sequences present in phytozome_V12.tar.gz. - phytozome_V12_targetp.tar.gz - Signal peptide prediction using TargetP 1.1 (http://www.cbs.dtu.dk/services/TargetP/) on sequences present in phytozome_V12.tar.gz. - phytozome_V12_predict_hyp.tar.gz - Probability of proline hydroxylation for each proline from 266135 protein sequences which were predicted to be secreted by a majority vote (using Phobius, SignalP 4.1 and TargetP 1.1). - phytozome_V12_maab.tar.gz - Motif and amino acid bias (MAAB) classification of hydroxyproline-rich glycoproteins performed on 266135 protein sequences which were predicted to be secreted by a majority vote (using Phobius, SignalP 4.1 and TargetP 1.1). The number of predicted hydroxyprolines in each sequence is also indicated (based on predictions provided in phytozome_V12_predict_hyp.tar.gz). - phytozome_V12_scan_ag.tar.gz. - Hydroxyproline aware arabinogalactan motif scan performed on 266135 protein sequences which were predicted to be secreted by a majority vote (using Phobius, SignalP 4.1 and TargetP 1.1). Hydroxyproline predictions are provided in phytozome_V12_predict_hyp.tar.gz. - phytozome_V12_scan_ag_hmmscan.tar.gz - Detection of domains in a subset of protein sequences which were found to contain arabinogalactan motifs (a subset of phytozome_V12_scan_ag.tar.gz). The list of the 62 plant species is provided in phytozome_V12.tar.gz README.txt. For questions contact mdragicevic@ibiss.bg.ac.rs.
DOI: 10.5281/zenodo.2605301
title: Annotation of Phytozome V12 protein plant sequences using the ragp pipeline for hydroxyproline-rich glycoprotein mining

description: Hydroxyproline aware annotation of hydroxyproline-rich glycoprotein (HRGP) sequences was performed on sequence data from 62 plant proteomes obtained from Phytozome database (https://phytozome.jgi.doe.gov/pz/portal.html, version 12) using the ragp R package (https://github.com/missuse/ragp, version 0.3.0.0001). In each archive a single comma separated value table (.csv) is present along with a README.txt file describing the contents of the corresponding .csv file. The archives are: - phytozome_V12.tar.gz - sequences from 62 plant proteomes (phytozome V12) with a total of 2797062 protein sequences. - phytozome_V12_phobius.tar.gz -<strong> </strong> Signal peptide prediction using Phobius (http://phobius.sbc.su.se/) on sequences present in phytozome_V12.tar.gz. - phytozome_V12_signalp.tar.gz -<strong> </strong> Signal peptide prediction using SignalP 4.1 (http://www.cbs.dtu.dk/services/SignalP-4.1/) on sequences present in phytozome_V12.tar.gz. - phytozome_V12_targetp.tar.gz - Signal peptide prediction using TargetP 1.1 (http://www.cbs.dtu.dk/services/TargetP/) on sequences present in phytozome_V12.tar.gz. - phytozome_V12_predict_hyp.tar.gz - Probability of proline hydroxylation for each proline from 266135 protein sequences which were predicted to be secreted by a majority vote (using Phobius, SignalP 4.1 and TargetP 1.1). - phytozome_V12_maab.tar.gz - Motif and amino acid bias (MAAB) classification of hydroxyproline-rich glycoproteins performed on 266135 protein sequences which were predicted to be secreted by a majority vote (using Phobius, SignalP 4.1 and TargetP 1.1). The number of predicted hydroxyprolines in each sequence is also indicated (based on predictions provided in phytozome_V12_predict_hyp.tar.gz). - phytozome_V12_scan_ag.tar.gz. - Hydroxyproline aware arabinogalactan motif scan performed on 266135 protein sequences which were predicted to be secreted by a majority vote (using Phobius, SignalP 4.1 and TargetP 1.1). Hydroxyproline predictions are provided in phytozome_V12_predict_hyp.tar.gz. - phytozome_V12_scan_ag_hmmscan.tar.gz - Detection of domains in a subset of protein sequences which were found to contain arabinogalactan motifs (a subset of phytozome_V12_scan_ag.tar.gz). The list of the 62 plant species is provided in phytozome_V12.tar.gz README.txt. For questions contact mdragicevic@ibiss.bg.ac.rs.
DOI: 10.25387/g3.11774814
title: Supplemental Material for Qiu et al., 2020

description: File S1-AUDPC values for Goss's wilt for DRIL78 populationFile S2- genotypes and phenotypes used for ICIMapping<br>
DOI: 10.5281/zenodo.3903369
title: Sex differences in visuomotor tracking

description: This excel file contains individual data from two cohorts presented in our publication. Each excel sheet presents a separate portion of data (=&gt;one sheet per figure)
description: {"references": ["Mathew Masson Danion (2020) Sex differences in visuomotor tracking"]}
DOI: 10.5281/zenodo.3903368
title: Sex differences in visuomotor tracking

description: This excel file contains individual data from two cohorts presented in our publication. Each excel sheet presents a separate portion of data (=&gt;one sheet per figure)
description: {"references": ["Mathew Masson Danion (2020) Sex differences in visuomotor tracking"]}
DOI: 10.21227/1j2n-e768
title: Quay crane spreader sway speed X-axis (10 use cases)

description: 10 Use cases of containers sway speed along the X-axis during loading and unloading procedures using a quay crane in Klaipeda containers terminal.
DOI: 10.21227/7za6-gc03
title: Quay crane spreader sway speed X-axis (10 use cases)

description: 10 Use cases of containers sway speed along the X-axis during loading and unloading procedures using a quay crane in Klaipeda containers terminal.
DOI: 10.5281/zenodo.3900583
title: Geopackage of data for Historical Archaeology and JOAD article

description: This file is a Geopackage database that includes the following: For raster files, *Raw* indicates that data is the same as the previously archived version and "Rendered" indicates the visualization of that data. "DigitalElevationModelRaw" and "DigitalElevationModelRendered" are based upon Digital Elevation Model for Blue Mountain Charcoal Research Project. https://zenodo.org/record/1252441 "HillshadeRaw" and "HillshadeRendered" are based upon Hillshade Analysis of "Digital Elevation Model for Blue Mountain Charcoal Research Project". https://zenodo.org/record/1252520 "SlopeRaw" and "SlopeRendered" are based upon Slope Analysis of "Digital Elevation Model for Blue Mountain Charcoal Research Project". https://zenodo.org/record/1252977 "Hearths" = Identified Charcoal Hearths from "Slope Analysis of 'Digital Elevation Model for Blue Mountain Charcoal Research Project'". https://zenodo.org/record/1252985 "ResearchArea" = Blue Mountain Charcoal Project Research Area. https://zenodo.org/record/1252418 The collection of this data is described here: Description of Methods for Identifying Charcoal Hearths along the Blue Mountain of Pennsylvania. https://zenodo.org/record/1255101 And is published here: Carter, Benjamin P. 2019. “Identifying Landscape Modification Using Open Data and Tools: The Charcoal Hearths of the Blue Mountain, Pennsylvania.” <em>Historical Archaeology</em> 53 (2): 432–43. https://doi.org/10.1007/s41636-019-00171-1. Carter, Benjamin. 2019. “Data for ‘Identifying Landscape Modification Using Open Data and Tools: The Charcoal Hearths of the Blue Mountain, Pennsylvania.’” <em>Journal of Open Archaeology Data</em> 7 (July). https://doi.org/10.5334/joad.53. This data can be visualized here: NEEDED
description: {"references": ["Carter, Benjamin. 2019. \"Data for 'Identifying Landscape Modification Using Open Data and Tools: The Charcoal Hearths of the Blue Mountain, Pennsylvania.'\" Journal of Open Archaeology Data 7 (July). https://doi.org/10.5334/joad.53.", "Carter, Benjamin P. 2019. \"Identifying Landscape Modification Using Open Data and Tools: The Charcoal Hearths of the Blue Mountain, Pennsylvania.\" Historical Archaeology 53 (2): 432\u201343. https://doi.org/10.1007/s41636-019-00171-1."]}