cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16988374.v1
title: Supplementary Material for: Different Clinical Features between Definite and Possible Takotsubo Syndrome in a Tertiary Referral Hospital

description: Background: Although imaging examination to exclude coronary artery disease (CAD) is an indispensable step for a definite diagnosis of Takotsubo syndrome (TTS), this step may be overlooked in a substantial proportion of patients with secondary TTS admitted to a tertiary hospital. However, the clinical profiles and outcomes of these patients with “possible TTS” have rarely been investigated. Methods: Among 420 consecutive TTS patients with characteristic transient ventricular ballooning on repeated echocardiography, 244 patients (58.1%) who underwent an imaging study for CAD were diagnosed with “definite TTS”, whereas the remaining 176 were designated with “possible TTS”. Results: Overall, hypoxia (67.6%) and dyspnea (55.5%) were predominant presentations. The possible group was characterized by higher prevalence of male gender (46.6% vs. 35.2%, p = 0.019), secondary TTS (97.2% vs. 86.5%, p &lt;0.001), cancer (43.2% vs. 29.1%, p = 0.003), sepsis (46.0% vs. 32.0%, p = 0.003), and non-apical ballooning pattern (30.7% vs. 21.3%, p = 0.001) with less common ST-segment elevation on electrocardiogram (18.8% vs. 34.0%, p = 0.001). The possible group showed higher frequency of mechanical ventilation (56.2% vs. 40.2%, p = 0.001), pulmonary edema (72.2% vs. 61.5%, p = 0.023) and shock management (70.5% vs. 54.1%, p = 0.001) with similar in-hospital mortality (17.2% vs. 17.0%, p = 0.964). Conclusions: In real-world clinical practice, coronary evaluation for strict diagnosis of TTS is not frequently feasible. Addition of the possible group without coronary evaluation to the clinical spectrum of TTS would be helpful for fair estimation of clinical implication of TTS.
DOI: 10.6084/m9.figshare.17059760
title: Supplementary Material for: Homoharringtonine inhibits Alzheimer’s disease progression by reducing neuroinflammation via STAT3 signaling in APP/PS1 mice

description: Medicine
DOI: 10.6084/m9.figshare.17059760.v1
title: Supplementary Material for: Homoharringtonine inhibits Alzheimer’s disease progression by reducing neuroinflammation via STAT3 signaling in APP/PS1 mice

description: Medicine
DOI: 10.6084/m9.figshare.17696531.v1
title: Population genomics, gut microbiota, and transcriptional response to heat shock in Hong Kong oyster Magallana hongkongensis

description: The Hong Kong oyster Mallagana hongkongensis, previously known as Crasscostrea hongkongensis, is a true oyster species that native to the estuary-coast of Pearl River Delta in southern China. The species has long been farmed for hundreds of years, and with scientific, ecological, cultural and nutritional importance. However, there is only limited information on the genetic background and stress adaptation mechanism of M. hongkongensis, restricting the sustainable production and utilisation of the local oyster resources. Here, we presented the population structure analysis on oysters collected from Deep Bay (Shenzhen Bay) and Lantau Island in Hong Kong, the transcriptome analysis on heat shock responses and the gut microbiota profile of M. hongkongensis. A conserved genetic background of local oysters was uncovered by the whole genome resequencing on 49 individuals, and the results indicated a close relationship and adaptation process in local oyster populations. Genetic variants in homeobox and heat shock protein genes were identified and predicted with regulatory function. Oysters had also been incubated under temperate (25 °C) and heat shock (32 °C) conditions for 24 hours to investigate the stress responses. Transcriptome profiles revealed the heat-induced regulation on heat shock protein, protein binding genes and signal transduction genes. We also found the differential expression of two splicing factors might be regulated by alternative splicing, and their expression levels were higher under heat stress. In addition, the gut microbe community were detected by 16S rRNA sequencing, and Cyanobacteria, Proteobacteria and Spirochaetes were the top phyla found in local oysters. Our results provided the knowledge on transcriptomic responses to heat shock in local oyster and implied the molecular basis for the divergent adaptation to the changeable aquatic environment. We also suggested that gut microbiota might participate in the regulation of stress response in M. hongkongensis. These findings give new insights on different mechanisms of local adaptation in Hong Kong oysters and other molluscs.<br>
DOI: 10.34740/kaggle/dsv/2981536
title: FOREST FIRE DATASET
DOI: 10.6084/m9.figshare.17701721.v1
title: Semelparity in an Australian anuran.

description: Capture-mark recapture data set of sandpaper frogs, <i>Lechriodus fletcheri</i>, collected from the Watagan mountains, NSW, Australia over three breeding seasons.
DOI: 10.6084/m9.figshare.17701731
title: The 16S rRNA lung microbiome in mechanically ventilated patients: a methodological study

description: Purpose: Characterization of the respiratory tract bacterial microbiome is in its infancy when compared to the gut microbiota. To limit bias mandates a robust methodology. Specific amplification of the hypervariable (V) region of the 16SrRNA gene is a crucial step. Differences in accuracy exist for one V region to another depending on the sampled environment. We aimed to assess the impact of the primer sequences targeting the V4 region currently used for gut microbiota studies in respiratory samples. <b>Materials and methods</b>: The original 515 F-806R primer pair targets the V4 region of the 16SrRNA gene. We compared two different 515 F-806R primer pairs before Illumina 250 paired-end sequencing for bacterial microbiome analyses of respiratory samples from critically-ill ventilated patients. “S-V4” for “Stringent V4” primer pair is used in two ongoing international projects “the Integrative Human microbiome project (iHMP)” and “the Earth microbiome project (EMP).” “R-V4” for “Relaxed V4” primer pair has been modified to reduce biases against specific environmental taxa. The optimal method was determined by concordance with conventional microbiology. <b>Results</b>: Twenty samples from three patients who developed a ventilator-associated pneumonia (VAP) and four who did not (control ventilated patients) were sequenced. Highly different results were obtained. “S-V4” provided the best agreement with the conventional microbiology for endotracheal aspirate: 89% as compared to 56% for “R-V4.” The main difference related to poor <i>Enterobacteriaceae</i> detection with “R-V4” primers. <b>Conclusions:</b> Accuracy of the bacterial lung microbiome composition was highly dependent on the primers used for amplification of the 16 s rRNA hypervariable sequence. This work validates for future lung microbiome studies the use of the 515 F-806R “S-V4” primer pair associated to Illumina® MiSeq paired-end sequencing.
DOI: 10.6084/m9.figshare.17701731.v1
title: The 16S rRNA lung microbiome in mechanically ventilated patients: a methodological study

description: Purpose: Characterization of the respiratory tract bacterial microbiome is in its infancy when compared to the gut microbiota. To limit bias mandates a robust methodology. Specific amplification of the hypervariable (V) region of the 16SrRNA gene is a crucial step. Differences in accuracy exist for one V region to another depending on the sampled environment. We aimed to assess the impact of the primer sequences targeting the V4 region currently used for gut microbiota studies in respiratory samples. <b>Materials and methods</b>: The original 515 F-806R primer pair targets the V4 region of the 16SrRNA gene. We compared two different 515 F-806R primer pairs before Illumina 250 paired-end sequencing for bacterial microbiome analyses of respiratory samples from critically-ill ventilated patients. “S-V4” for “Stringent V4” primer pair is used in two ongoing international projects “the Integrative Human microbiome project (iHMP)” and “the Earth microbiome project (EMP).” “R-V4” for “Relaxed V4” primer pair has been modified to reduce biases against specific environmental taxa. The optimal method was determined by concordance with conventional microbiology. <b>Results</b>: Twenty samples from three patients who developed a ventilator-associated pneumonia (VAP) and four who did not (control ventilated patients) were sequenced. Highly different results were obtained. “S-V4” provided the best agreement with the conventional microbiology for endotracheal aspirate: 89% as compared to 56% for “R-V4.” The main difference related to poor <i>Enterobacteriaceae</i> detection with “R-V4” primers. <b>Conclusions:</b> Accuracy of the bacterial lung microbiome composition was highly dependent on the primers used for amplification of the 16 s rRNA hypervariable sequence. This work validates for future lung microbiome studies the use of the 515 F-806R “S-V4” primer pair associated to Illumina® MiSeq paired-end sequencing.
DOI: 10.5281/zenodo.5808389
title: Head-Neck-PET-CT combined GTVs 2D images

description: This dataset contains 2D images of the combined Gross Tumour Volumes (GTVs) of a Head and Neck cancer public dataset created from four different institutions in Canada. 298 images were created by using the CT and the combined GTV masks extracted from the RTSTRUCTs associated with the patient study. The dataset was orginally collected from https://wiki.cancerimagingarchive.net/display/Public/Head-Neck-PET-CT into an Orthanc server. Patient studies were then processed into 3d numpy arrays. The central slices representing the slice with the highest number of contoured pixels were selected and extracted into 2d numpy arrays.
DOI: 10.5281/zenodo.5808388
title: Head-Neck-PET-CT combined GTVs 2D images

description: This dataset contains 2D images of the combined Gross Tumour Volumes (GTVs) of a Head and Neck cancer public dataset created from four different institutions in Canada. 298 images were created by using the CT and the combined GTV masks extracted from the RTSTRUCTs associated with the patient study. The dataset was orginally collected from https://wiki.cancerimagingarchive.net/display/Public/Head-Neck-PET-CT into an Orthanc server. Patient studies were then processed into 3d numpy arrays. The central slices representing the slice with the highest number of contoured pixels were selected and extracted into 2d numpy arrays.
DOI: 10.21227/dt54-qg81
title: N1 dataset in the paper A Data Embedding Scheme for Efficient Program Behavior Modeling with Neural Networks" accepted by IEEE Transactions on Emerging Topics in Computational Intelligence (TETCI)

description: This dataset is used in the experiment of the paper "A Data Embedding Scheme for Efficient Program Behavior Modeling with Neural Networks" accepted by IEEE Transactions on Emerging Topics in Computational Intelligence (TETCI). System calsl and their relevant branch sequences are contained in the tar.gz file. For a detailed description, please refer to the paper.
DOI: 10.34740/kaggle/dsv/2981954
title: Contrastive Language Image Pretraining by openai
DOI: 10.6084/m9.figshare.14544792
title: Supplementary Document - Global evolutionary dynamics and resistome analysis of Clostridioides difficile ribotype 017 (DOI: https://doi.org/10.1101/2021.07.04.451084)

description: A dataset of <i>C. difficile</i> ribotype 017 genomes included in the phylogenomic analyses.<br>This study is now available at https://doi.org/10.1101/2021.07.04.451084
DOI: 10.6084/m9.figshare.14544792.v7
title: Supplementary Document - Global evolutionary dynamics and resistome analysis of Clostridioides difficile ribotype 017 (DOI: https://doi.org/10.1101/2021.07.04.451084)

description: A dataset of <i>C. difficile</i> ribotype 017 genomes included in the phylogenomic analyses.<br>This study is now available at https://doi.org/10.1101/2021.07.04.451084
DOI: 10.6084/m9.figshare.17701775
title: Supplementary Material for: Dose-Response Relationship in Selective Serotonin and Norepinephrine Reuptake Inhibitors in the Treatment of Major Depressive Disorder: A Meta-Analysis and Network Meta-Analysis of Randomized Controlled Trials

description: <b><i>Introduction:</i></b> Selective serotonin and norepinephrine reuptake inhibitors (SNRI) are among the most prescribed antidepressants, and dose escalation is a frequently applied strategy after non-response to an initially prescribed dose. <b><i>Objective:</i></b> This meta-analysis aimed to find evidence of a dose-response relationship or to the contrary in direct comparisons of different SNRI doses in patients with major depressive disorder. <b><i>Methods:</i></b> A systematic literature search for RCTs comparing at least two doses of SNRIs was carried out in CENTRAL, PubMed, PsycINFO, and EMBASE. Doses were classified as high, medium, and low according to manufacturers’ product monographs and analyses at the level of SNRIs as a group and for single substances, accompanied by sensitivity network meta-analyses (Prospero CRD42018081031). <b><i>Results:</i></b> From 2,070 studies screened, we included 26 studies with a total of 10,242 patients. Comparisons of medium versus low and high versus medium doses resulted in clinically and statistically non-significant standardized mean differences of –0.06 (–0.16 to 0.04) and –0.06 (–0.16 to 0.03) in favor of higher doses. In the analyses of single substances, no statistically significant results emerged, and many contrasts yielded very small effect sizes. Dropouts due to side effects tended to be more frequent with higher doses. Heterogeneity was low. Network meta-analyses of direct comparisons supported the findings, as did a risk of bias analysis. <b><i>Conclusion:</i></b> Based on the lack of positive evidence for a dose-response relationship in SNRIs as a group and in single SNRIs, we recommend prescribing medium doses. In case of insufficient response, we do not recommend increasing the dose of SNRIs.
DOI: 10.6084/m9.figshare.17701784.v1
title: orginal data(Plotytarya strohilacea Sieb. et Zuc (1).xlsx

description: data
DOI: 10.6084/m9.figshare.17701784
title: orginal data(Plotytarya strohilacea Sieb. et Zuc (1).xlsx

description: data
DOI: 10.6084/m9.figshare.17701766
title: Effect of Microfluidic Rectangular Microelectrode Geometry on Bioparticles Manipulation in Dielectrophoretic Application

description: Microfluidic cell manipulation techniques have been continually developed and integrated into miniature chips as a so-called lab-on-a-chip (LOC) platform for high-throughput bioassays. Among the various mechanisms of bioparticles manipulation by electrically induced forces, dielectrophoresis (DEP) has been regarded as the most promising technique utilized in microfluidic systems. Into the micro- to nano-scale level of DEP configuration, the common challenges of undesirable side effects such as electrohydrodynamic effects, joule heating, and electrolysis that may occur in the microfluidic system has always been a hurdle that would severely limit the DEP performance. A simulation study was performed on the versatile capabilities of designed rectangular type of dielectrophoresis microelectrodes geometry configuration to manipulate, trap, and characterize bioparticles suspended in the liquid medium. By using this geometry, the performance of this rectangular microelectrode geometry was studied, and an attempt was made to characterize this microelectrode design pattern for different bioassay functions, as well as to provide microelectrode design information for DEP device enhancement were investigated.
DOI: 10.6084/m9.figshare.17701766.v1
title: Effect of Microfluidic Rectangular Microelectrode Geometry on Bioparticles Manipulation in Dielectrophoretic Application

description: Microfluidic cell manipulation techniques have been continually developed and integrated into miniature chips as a so-called lab-on-a-chip (LOC) platform for high-throughput bioassays. Among the various mechanisms of bioparticles manipulation by electrically induced forces, dielectrophoresis (DEP) has been regarded as the most promising technique utilized in microfluidic systems. Into the micro- to nano-scale level of DEP configuration, the common challenges of undesirable side effects such as electrohydrodynamic effects, joule heating, and electrolysis that may occur in the microfluidic system has always been a hurdle that would severely limit the DEP performance. A simulation study was performed on the versatile capabilities of designed rectangular type of dielectrophoresis microelectrodes geometry configuration to manipulate, trap, and characterize bioparticles suspended in the liquid medium. By using this geometry, the performance of this rectangular microelectrode geometry was studied, and an attempt was made to characterize this microelectrode design pattern for different bioassay functions, as well as to provide microelectrode design information for DEP device enhancement were investigated.
DOI: 10.6084/m9.figshare.17078465
title: orginal data(Plotytarya strohilacea Sieb. et Zuc.xlsx

description: dataset
DOI: 10.6084/m9.figshare.17078465.v1
title: orginal data(Plotytarya strohilacea Sieb. et Zuc.xlsx

description: dataset
DOI: 10.5281/zenodo.5808474
title: Data from: Size and Causes of the Shadow Economy in Iran: An Analysis with the MIMIC Approach

description: All the data needed (in raw form) in order to replicate the results of the paper “Size and Causes of the Shadow Economy in Iran: An Analysis with the MIMIC Approach” is available here. Information on how to use this data to produce the results is provided within the paper and its appendices. All the data gathered here are taken from public sources, namely the “World Bank” (World Development Indicators data), “Central Bank of the Islamic Republic of Iran”, “Plan and Budget Organization of the Islamic Republic of Iran” and “Statistical Center of Iran”.
description: For inquiries regarding the data and/or replication processes please contact the corresponding author, ML (mahdi.lotfi@aut.ac.ir).
DOI: 10.6084/m9.figshare.16864552.v1
title: UntitlePsychometric assessment of the Persian translation of the Differentiation of Self Inventory (DSI) among Iranian Adultsd Item

description: The present study investigates the psychometric assessment of the Persian translation of Differentiation of Self Inventory (DSI) among Iranian adults.
DOI: 10.6084/m9.figshare.16864552
title: UntitlePsychometric assessment of the Persian translation of the Differentiation of Self Inventory (DSI) among Iranian Adultsd Item

description: The present study investigates the psychometric assessment of the Persian translation of Differentiation of Self Inventory (DSI) among Iranian adults.
DOI: 10.6084/m9.figshare.17605335
title: Investigation of the Fungal Diversity of the Federated States of Micronesia and the Construction of an Updated Fungal Inventory

description: The Federated States of Micronesia (FSM) is an island country in the western Pacific and is a known biodiversity hotspot. However, a relatively small number of fungi (236 species) have been reported till July 2021. Since fungi play major ecological roles in ecosystems, we investigated the fungal diversity of FSM from various sources over 2016 and 2017 and constructed a local fungal inventory, which also included the previously reported species. Fruiting bodies were collected from various host trees and fungal strains were isolated from marine and terrestrial environments. A total of 99 species, of which 78 were newly reported in the FSM, were identified at the species level using a combination of molecular and morphological approaches. Many fungal species were specific to the environment, host, or source. Upon construction of the fungal inventory, 314 species were confirmed to reside in the FSM. This inventory will serve as an important basis for monitoring fungal diversity and identifying novel biological resources in FSM.
DOI: 10.6084/m9.figshare.17605335.v1
title: Investigation of the Fungal Diversity of the Federated States of Micronesia and the Construction of an Updated Fungal Inventory

description: The Federated States of Micronesia (FSM) is an island country in the western Pacific and is a known biodiversity hotspot. However, a relatively small number of fungi (236 species) have been reported till July 2021. Since fungi play major ecological roles in ecosystems, we investigated the fungal diversity of FSM from various sources over 2016 and 2017 and constructed a local fungal inventory, which also included the previously reported species. Fruiting bodies were collected from various host trees and fungal strains were isolated from marine and terrestrial environments. A total of 99 species, of which 78 were newly reported in the FSM, were identified at the species level using a combination of molecular and morphological approaches. Many fungal species were specific to the environment, host, or source. Upon construction of the fungal inventory, 314 species were confirmed to reside in the FSM. This inventory will serve as an important basis for monitoring fungal diversity and identifying novel biological resources in FSM.
DOI: 10.34808/36g3-yf80
title: Park and Ride system in Gdansk 2020- video traffic data

description: Park and Ride system in Gdansk 2020- video traffic data
The data contain video traffic data (vehicles) registered at 7 measurement points.
The aim of the study was to check the operation of the Park and Ride system in Gdansk and to indicate new locations of parking lots for this system. Camera was mounted on 7-meter-high mast. Recording date 28.10.2020. 
The data is part of the Engineering Thesis: "The use of a Park and Ride system and development perspectives in the environment of integration nodes on the City of Gdańsk." In this paper some measurements of Park&Ride parking lots usage in Gdansk were made. Characteristic of chosen existing parking lots with analysis of surroundings. Analysis of existing and planned state in context of planned Park&Ride parking lots.   

Location of measurement points:

  

Sample view of the video material:

  Measurement point
Direction
 
 
 
 
 
 
 
Time
 
 
 
 
 
 
 
 
Total
6 - 7 
7 - 8 
8 - 9 
9 - 10 
10 - 11 
11 - 12 
12 - 13 
13 - 14 
14 - 15 
15 - 16 
16 - 17 
17 - 18 
18 - 19 
19 - 20 
20 - 21 
21 - 22 
Parking Jasień
Entry [veh/h]
20
21
17
6
9
10
10
9
8
18
17
15
14
9
7
8
198
20
21
17
6
9
10
10
9
8
18
17
15
14
9
7
8
198
Exit [veh/h]
-4
-7
-7
-8
-10
-7
-9
-15
-6
-24
-35
-19
-12
-12
-11
-9
-195
-4
-7
-7
-8
-10
-7
-9
-15
-6
-24
-35
-19
-12
-12
-11
-9
-195
Parking places
25
39
49
47
46
49
50
44
46
40
22
18
20
17
13
12
31
Usage
30,86%
48,15%
60,49%
58,02%
56,79%
60,49%
61,73%
54,32%
56,79%
49,38%
27,16%
22,22%
24,69%
20,99%
16,05%
14,81%
38,27%
DOI: 10.34808/n387-7s79
title: Gdynia Wielkopolska street 2020 - video traffic data

description: Gdynia Wielkopolska street 2020 - video traffic data
The data contain video traffic data registered at 3 measurement points in Gdynia Wielkopolska street.
Camera was mounted on 7-meter-high mast at the intersection. Recording date 13.10.2020.  

Sample view of the video material:
DOI: 10.48370/ofd/zh9gv3/glsgiu
title: HMW_Crepis_tectorum_L_H_1699.jpg

description: :unav
DOI: 10.48370/ofd/zh9gv3/lpoy4s
title: HMW_Crepis_tectorum_L_H_5426.jpg

description: :unav
DOI: 10.48370/ofd/zh9gv3
title: Pępawa dachowa (Crepis tectorum L.), 5426

description: Herbarium
DOI: 10.48370/ofd/rwiq8j/rqbapm
title: HMW_Avenula_pubescens_(Huds.)_Dumort._H_4918.jpg

description: :unav
DOI: 10.48370/ofd/rwiq8j
title: Owsica omszona (Avenula pubescens (Huds.) Dumort.), 493

description: Herbarium
DOI: 10.48370/ofd/rhxp1z/lpuxg7
title: HMW_Avenula_pubescens_(Huds.)_Dumort._H_7298.jpg

description: :unav
DOI: 10.48370/ofd/rhxp1z
title: Owsica omszona (Avenula pubescens (Huds.) Dumort.), 5486

description: Herbarium
DOI: 10.48370/ofd/s43n3c/9ogi8u
title: HMW_Equisetum_telmateia_Ehrh._H_4810.tif

description: :unav
DOI: 10.48370/ofd/s43n3c
title: Skrzyp olbrzymi (Equisetum telmateia Ehrh.), 4217

description: Herbarium
DOI: 10.48370/ofd/t3ohzl/urigsj
title: HMW_Equisetum_telmateia_Ehrh._H_5665.tif

description: :unav