cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.77czy3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sporozoa",
 "HasCoordinate is true",
 "Country is one of (Spain)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223399-210914110416597/datasets/export for details.
DOI: 10.15468/dl.fap6n4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catasetum ×perazolianum K.G.Lacerda & V.P.Castro"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127366-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ua8f3n
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Camellia subintegra P.C.Huang"
 ]
}

 The dataset includes 13 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223381-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11091261
title: Experiment on the performance of different machine learning algorithms for classification - Results

description: Results of a short performance study of machine learning algorithms

Context and methodology



This data was produced while performing a university project to examine the performance of various machine learning algorithms on different prediction datasets

The data serves the purpose of comparing the metrics of performing the different tasks

The dataset contains a number of matrices for every classifier and every dataset

The data was produced with python scripts provided further down and with the usage of the external datasets:



Membership Woes Dataset (OpenML): https://api.openml.org/d/44224

Zoo dataset (UCI): https://doi.org/10.24432/C5R59V

Breast Cancer Dataset: https://github.com/moritx/performance-experiment-machine-learning/tree/main/data

Loan Dataset: https://github.com/moritx/performance-experiment-machine-learning/tree/main/data




Technical details



The data consists of one JSON file

The source code for producing this data is available at https://doi.org/10.5281/zenodo.11085222


Structure of the data

[ {"classifier": ...,"dataset": ...,"hyper_parameters": ...,"cross_validation_results": {    "fit_time": {} ,    "score_time": ...,    "metrics": {}}, "holdout_test_results": ...}, ]
DOI: 10.15468/dl.x4m5k4
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Dasymutilla Ashmead (Hymenoptera, Mutillidae) in Panama: new species, sex associations and seasonal flight activity"
 ]
}

 The dataset includes 246 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127352-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtkwzm
title: Occurrence Download

description: A dataset listing the 2912 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.2145 40.57632,-74.24925 40.53521,-74.25019 40.49364,-74.04205 40.51655,-73.83499 40.57185,-73.7517 40.59409,-73.66641 40.63357,-73.71271 40.7891,-73.75465 40.92011,-73.89684 40.93154,-73.97602 40.8108,-74.00713 40.76378,-74.01411 40.73938,-74.02088 40.70301,-74.01798 40.68131,-74.15097 40.64751,-74.19635 40.64063,-74.2145 40.57632))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta",
 "Year 2000-2022"
 ]
}

 The dataset's 2912 records were derived from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0427491-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cs4n3m
title: Occurrence Download

description: A dataset containing 619 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Phrynosoma asio Cope, 1864"
 ]
}

 The dataset includes 619 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127378-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5kqfz
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Langaha alluaudi Mocquard, 1901"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0274497-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.95dqkd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atractus serranus Amaral, 1930"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0280591-210914110416597/datasets/export for details.
DOI: 10.15468/dl.tza8qr
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is A review of the Pseudomyrmex ferrugineus and Pseudomyrmex goeldii species groups: acacia-ants and relatives (Hymenoptera: Formicidae)"
 ]
}

 The dataset includes 84 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127373-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8p22cj
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dictyochophyceae",
 "HasCoordinate is true",
 "Country is one of (Spain)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 320 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223365-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdkuu8
title: Occurrence Download

description: A dataset containing 3107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxalis tetraphylla Cav."
 ]
}

 The dataset includes 3107 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036153-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11090228
title: ZINC15 for Drug Similarity Search

description: Abstract: This dataset is a subset of the ZINC15 database, specifically filtered and processed for molecular similarity search applications using MegaMolBART embeddings. The subset focuses on drug-like molecules with specific physicochemical and purchasability properties.

Keywords: ZINC15, Molecular Similarity Search, MegaMolBART, Drug Discovery, Cheminformatics.

Background: The ZINC15 database is a comprehensive collection of commercially available compounds for virtual screening. This subset was created to facilitate the development of machine learning models for drug discovery, particularly those based on molecular embeddings.

Methodology: The ZINC15 database was queried using the following criteria:



Molecular weight <= 500 Daltons

LogP <= 5

Reactivity level = "reactive"

Purchasability = "annotated" 


The resulting dataset was then processed to extract MegaMolBART embeddings for each molecule.

Data Description: 

The dataset is organized into three folders:



/data/project/ubrite/drg-depot/zinc15-similarity-search/raw-data/ (66 GB): This folder contains the raw data files obtained from the ZINC15 database after applying the filtering criteria.

/data/project/ubrite/drg-depot/zinc15-similarity-search/processed-data/ (13 GB): This folder contains the processed data, including the extracted MegaMolBART embeddings for each molecule. 

/data/project/ubrite/drg-depot/zinc15-similarity-search/query/: This folder contains sample SMILES strings and their corresponding embeddings for performing similarity searches.


Technical Specifications: 



Format: SMILES strings, numerical data (embeddings)

Size: 79 GB (total)

License: This dataset is derived from the ZINC15 database and processed using MegaMolBART. It is subject to the licenses of both the ZINC15 database and the MegaMolBART model.



ZINC15 Database: ZINC15 data is made available under the Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0) license. For more information, please visit the ZINC15 website.

MegaMolBART: The MegaMolBART model and its associated data are copyrighted by AstraZeneca and NVIDIA. The usage of MegaMolBART is subject to the terms and conditions specified by the copyright holders.




By using this dataset, you agree to comply with the licenses and conditions imposed by the ZINC15 database and MegaMolBART.

Access and Usage: 

The dataset is available for download through Zenodo. Users are encouraged to acknowledge this dataset and the corresponding Zenodo entry in any publications or research projects that utilize the data. 

Contact: Fuad Al Abir, fuad021@uab.edu
DOI: 10.5281/zenodo.11090229
title: ZINC15 for Drug Similarity Search

description: Abstract: This dataset is a subset of the ZINC15 database, specifically filtered and processed for molecular similarity search applications using MegaMolBART embeddings. The subset focuses on drug-like molecules with specific physicochemical and purchasability properties.

Keywords: ZINC15, Molecular Similarity Search, MegaMolBART, Drug Discovery, Cheminformatics.

Background: The ZINC15 database is a comprehensive collection of commercially available compounds for virtual screening. This subset was created to facilitate the development of machine learning models for drug discovery, particularly those based on molecular embeddings.

Methodology: The ZINC15 database was queried using the following criteria:



Molecular weight <= 500 Daltons

LogP <= 5

Reactivity level = "reactive"

Purchasability = "annotated" 


The resulting dataset was then processed to extract MegaMolBART embeddings for each molecule.

Data Description: 

The dataset is organized into three folders:



/data/project/ubrite/drg-depot/zinc15-similarity-search/raw-data/ (66 GB): This folder contains the raw data files obtained from the ZINC15 database after applying the filtering criteria.

/data/project/ubrite/drg-depot/zinc15-similarity-search/processed-data/ (13 GB): This folder contains the processed data, including the extracted MegaMolBART embeddings for each molecule. 

/data/project/ubrite/drg-depot/zinc15-similarity-search/query/: This folder contains sample SMILES strings and their corresponding embeddings for performing similarity searches.


Technical Specifications: 



Format: SMILES strings, numerical data (embeddings)

Size: 79 GB (total)

License: This dataset is derived from the ZINC15 database and processed using MegaMolBART. It is subject to the licenses of both the ZINC15 database and the MegaMolBART model.



ZINC15 Database: ZINC15 data is made available under the Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0) license. For more information, please visit the ZINC15 website.

MegaMolBART: The MegaMolBART model and its associated data are copyrighted by AstraZeneca and NVIDIA. The usage of MegaMolBART is subject to the terms and conditions specified by the copyright holders.




By using this dataset, you agree to comply with the licenses and conditions imposed by the ZINC15 database and MegaMolBART.

Access and Usage: 

The dataset is available for download through Zenodo. Users are encouraged to acknowledge this dataset and the corresponding Zenodo entry in any publications or research projects that utilize the data. 

Contact: Fuad Al Abir, fuad021@uab.edu
DOI: 10.15468/dl.ywc98a
title: Occurrence Download

description: A dataset containing 1726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dinophyceae",
 "HasCoordinate is true",
 "Country is one of (Spain)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 1726 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223369-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7mc5v
title: Occurrence Download

description: A dataset containing 322 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gopherus Rafinesque, 1832",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-76.915 36.551,-77.698 36.545,-77.728 36.465,-77.786 36.319,-77.937 36.065,-78.199 35.726,-78.463 35.567,-78.816 35.293,-79.101 35.099,-79.416 34.938,-79.685 34.764,-79.96 34.622,-80.278 34.487,-80.675 34.252,-81.043 34.118,-81.505 33.942,-81.908 33.808,-82.059 33.631,-82.506 33.518,-82.79 33.322,-83.305 33.043,-83.911 32.78,-84.39 32.633,-84.65 32.519,-84.952 32.408,-84.976 32.396,-84.958 32.217,-85.07 31.965,-85.113 31.686,-85.081 31.386,-85.035 31.104,-85.005 30.977,-84.961 30.912,-84.935 30.854,-84.92 30.765,-84.824 30.71,-83.949 30.669,-83.038 30.618,-82.009 30.554,-82.04 30.636,-81.971 30.782,-81.929 30.817,-81.87 30.794,-81.787 30.768,-81.712 30.746,-81.637 30.734,-81.535 30.721,-81.427 30.709,-81.451 30.756,-81.422 30.83,-81.392 30.957,-81.402 31.019,-81.392 31.112,-81.354 31.141,-81.32 31.183,-81.26 31.224,-81.267 31.355,-81.166 31.518,-81.119 31.625,-81.113 31.706,-80.839 31.977,-80.832 32.071,-80.721 32.143,-80.642 32.228,-80.438 32.309,-80.377 32.446,-80.209 32.536,-80.162 32.537,-80.075 32.595,-80 32.592,-79.875 32.677,-79.857 32.739,-79.778 32.776,-79.718 32.798,-79.686 32.84,-79.575 32.898,-79.539 32.976,-79.499 33.001,-79.343 32.983,-79.317 33.078,-79.264 33.107,-79.212 33.122,-79.174 33.179,-79.164 33.271,-79.14 33.346,-79.1 33.434,-79.019 33.52,-78.858 33.689,-78.728 33.781,-78.569 33.833,-78.377 33.888,-78.185 33.903,-78.027 33.877,-78.002 33.837,-77.951 33.827,-77.935 33.895,-77.83 34.137,-77.705 34.284,-77.537 34.42,-77.329 34.521,-77.203 34.596,-77.095 34.634,-76.964 34.661,-76.794 34.689,-76.673 34.68,-76.58 34.651,-76.514 34.596,-76.482 34.652,-76.322 34.829,-76.057 35.033,-75.986 35.062,-75.861 35.138,-75.607 35.219,-75.526 35.203,-75.469 35.393,-75.448 35.57,-75.484 35.733,-75.517 35.797,-75.66 36.052,-75.756 36.233,-75.799 36.342,-75.856 36.55,-76.908 36.551,-76.915 36.551))"
 ]
}

 The dataset includes 322 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127356-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdztfp
title: Occurrence Download

description: A dataset containing 2246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Caloscypha Boud."
 ]
}

 The dataset includes 2246 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0427261-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.basdyd
title: Occurrence Download

description: A dataset containing 653 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bertholletia excelsa Bonpl."
 ]
}

 The dataset includes 653 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015640-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzht6y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catasetum peruvianum Dodson & D.E.Benn."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127367-230224095556074/datasets/export for details.
DOI: 10.15468/dl.hat3d8
title: Occurrence Download

description: A dataset containing 7276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-84.78466 41.66552,-84.84103 39.12429,-82.66234 38.49473,-82.59319 38.07813,-81.65115 37.17675,-80.27503 37.53237,-79.69793 38.55642,-79.28826 38.47307,-78.30335 39.3187,-77.80872 39.24182,-77.87441 39.67555,-75.7527 39.70565,-75.0848 40.37533,-75.13753 41.01315,-74.68968 41.36353,-75.2468 41.95563,-79.6405 42.03774,-79.79212 42.44901,-84.78466 41.66552))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)"
 ]
}

 The dataset includes 7276 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223364-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkkxr6
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heleobia atacamensis (R.A.Philippi, 1860)"
 ]
}

 The dataset includes 39 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127368-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94h96h
title: Occurrence Download

description: A dataset containing 1726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dinophyceae",
 "HasCoordinate is true",
 "Country is one of (Spain)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 1726 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223366-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vc6brw
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catasetum planiceps Lindl."
 ]
}

 The dataset includes 67 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127370-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yymw9j
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Filosia",
 "HasCoordinate is true",
 "Country is one of (Spain)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223394-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tp3tvf
title: Occurrence Download

description: A dataset containing 979 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alytes cisternasii Boscá, 1879",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 979 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015572-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8w8sx9
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Revision of the New World Plant Bug Genus Cyrtocapsus (Heteroptera: Miridae Bryocorinae: Eccritotarsini), with New and Revised Synonymies, Lectotype Designations, and Descriptions of 12 New Species"
 ]
}

 The dataset includes 308 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127372-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4bn35
title: Occurrence Download

description: A dataset containing 20178 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scartella cristata (Linnaeus, 1758)"
 ]
}

 The dataset includes 20178 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223734-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ragkvd
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polylepis tarapacana Phil."
 ]
}

 The dataset includes 212 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127383-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bj44qx
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-2.52416 51.08254,-1.69423 51.08254,-1.69423 51.41437,-2.52416 51.41437,-2.52416 51.08254))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Poduromorpha"
 ]
}

 The dataset includes 48 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0422442-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dryvx6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Picocystophyceae",
 "HasCoordinate is true",
 "Country is one of (Spain)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223427-210914110416597/datasets/export for details.
DOI: 10.15468/dl.ntyd5m
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catasetum punctatum Rolfe"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127384-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.