cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4556191.v1
title: Raman spectra of polycrystalline microdiamond inclusions in zircons, and ultrahigh-pressure metamorphism of a quartzofeldspathic rock from the Erzgebirge terrane, Germany

description: Polycrystalline microdiamonds are rare in ultrahigh-pressure (UHP) rocks worldwide. Among samples collected at Erzgebirge, Germany, we found abundant polycrystalline microdiamonds as inclusions in zircons from a quartzofeldspathic rock. To illuminate their origin and forming age, we investigated morphologies and Raman spectra of 52 microdiamond inclusions, and dated the zircon host. The zircons have low Th/U values (0.03–0.07) and a concordia U/Pb age of 335.8 ± 1.9 Ma. Polycrystalline diamond (10–40 µm) consists of many fine-grained crystals (1.5–3 µm) with different orientations; discrete single diamonds (2–20 µm) are rare. All measured Raman spectra show an intense diamond band at 1332–1328 cm<sup>−1</sup> and have a negative correlation with full width at half maximum (FWHM) of 5.8–11.3 cm<sup>−1</sup>. These data combined with previously reported diamond band data (1331–1337 cm<sup>−1</sup>) are compatible with those of diamond inclusions in various host minerals from other UHP terranes, but are different from those of ureilite diamonds. The Erzgebirge microdiamonds in zircon do not display visible disordered <i>sp</i><sup>3</sup>-carbon, but show downshifting of the Raman band from the ideal value (1332 cm<sup>−1</sup>), and have a broader diamond band (FWHM &gt;3 cm<sup>−1</sup>) than those of well-ordered diamonds. These features may reflect imperfect ordering due to rapid nucleation/crystallization during UHP metamorphism and rapid exhumation of the UHP terrane. Graphite inclusions in zircon show a typical G-band at 1587 cm<sup>−1</sup>. Our study together with previously reported C-isotopic compositions (δ<sup>13</sup>C, −17 to −27‰) of diamond and occurrences of fluid/melt inclusions in diamond and garnet indicates that Erzgebirge microdiamonds are metamorphic, have an organic carbon source, and crystallized from aqueous fluids. Limited long-range ordering suggested by the Raman spectra is a function of the <i>P</i>–<i>T</i> time of crystallization and subsequent thermal annealing on decompression. Combined with regional geology, our work further constrains the tectonic evolution of the Erzgebirge terrane.
DOI: 10.6084/m9.figshare.4556203.v1
title: Appendix_all INNs

description: Data are presenting differences in prices for 3 selected INNs from reimbursement lists and consumption rates for the same INNs and for the same period.
DOI: 10.4225/03/587ea20289fd9
title: eya1 class 2 wig file

description: wig file for class 2 in eya1 alignment, as discussed in paper
DOI: 10.6084/m9.figshare.4556146
title: Intra and intergeneric transferable gene-derived orthologous microsatellite markers in <i>Eucalyptus</i> and <i>Corymbia</i> species

description: This study describes the development and application of a novel strategy that targets repeat domains in the orthologous genic region of two <i>Eucalyptus</i> species to derive Expressed Sequence Tags (EST)-based functional orthologous microsatellite markers and their characterization in four <i>Eucalyptus</i> and two <i>Corymbia</i> species. About 13,468 ESTs of <i>Eucalyptus</i> <i>globulus</i> were assembled into unigenes, screened for repeat motifs and then mapped on the <i>Eucalyptus</i> <i>grandis</i> genome. The simple sequence repeat (SSR)-positive orthologous sequences of <i>E. grandis</i>, along with 13,380 genomic sequences of <i>Eucalyptus</i> <i>camaldulensis</i>, were then screened for di- and tri-nucleotide repeat motifs and 230 primer pairs were designed. Functional annotation was carried out through homology search and gene ontology using <i>E. grandis</i> transcript database. Of 230 SSRs, 179 were validated in <i>E. camaldulensis</i> and a subset of 20 SSRs was used for characterization and cross species/genera transferability using 130 individuals from both <i>Eucalyptus</i> and <i>Corymbia</i>. The average values of number of alleles, polymorphic information content, observed and expected heterozygosity were 10.57, 0.59, 0.43 and 0.62, respectively, in <i>E. camaldulensis</i>. High marker transferability within the genus <i>Eucalyptus</i> (up to 98%) and <i>Corymbia</i> (up to 80%) was observed.
DOI: 10.4225/03/587ea26ba2bcd
title: wnt7aa manual alignment

description: An alignment of human, mouse and zebrafish DNA sequences of wnt7aa, with manual intervention to ensure exons are aligned.<br>
DOI: 10.6084/m9.figshare.4556134
title: Pereira et al 2017 supplementary material

description: This fileset contains supplementary material for the paper:Pereira J., Saura S. & Jordan F. (2017) Single-node versus multi-node centrality in landscape graph analysis: key habitat patches and their protection for twenty bird species in NE Spain. (http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12783/full)<br>The supplementary material includes an example of calculation of the dissimilarity index, a case study of the species <i>A. gentilis</i> and <i>N. percnopterus</i> and the code for KeyPlayer analysis in R (the file AccGen maxpro is used as input in the analysis as an example).
DOI: 10.6084/m9.figshare.4556146.v1
title: Intra and intergeneric transferable gene-derived orthologous microsatellite markers in <i>Eucalyptus</i> and <i>Corymbia</i> species

description: This study describes the development and application of a novel strategy that targets repeat domains in the orthologous genic region of two <i>Eucalyptus</i> species to derive Expressed Sequence Tags (EST)-based functional orthologous microsatellite markers and their characterization in four <i>Eucalyptus</i> and two <i>Corymbia</i> species. About 13,468 ESTs of <i>Eucalyptus</i> <i>globulus</i> were assembled into unigenes, screened for repeat motifs and then mapped on the <i>Eucalyptus</i> <i>grandis</i> genome. The simple sequence repeat (SSR)-positive orthologous sequences of <i>E. grandis</i>, along with 13,380 genomic sequences of <i>Eucalyptus</i> <i>camaldulensis</i>, were then screened for di- and tri-nucleotide repeat motifs and 230 primer pairs were designed. Functional annotation was carried out through homology search and gene ontology using <i>E. grandis</i> transcript database. Of 230 SSRs, 179 were validated in <i>E. camaldulensis</i> and a subset of 20 SSRs was used for characterization and cross species/genera transferability using 130 individuals from both <i>Eucalyptus</i> and <i>Corymbia</i>. The average values of number of alleles, polymorphic information content, observed and expected heterozygosity were 10.57, 0.59, 0.43 and 0.62, respectively, in <i>E. camaldulensis</i>. High marker transferability within the genus <i>Eucalyptus</i> (up to 98%) and <i>Corymbia</i> (up to 80%) was observed.
DOI: 10.4225/03/587ea28998022
title: myf6 manual alignment

description: An alignment of human, mouse and zebrafish DNA sequences of myf6, with manual intervention to ensure exons are aligned.<br>
DOI: 10.6084/m9.figshare.4556017
title: Supplementary data - Articles excluded at full text from Does sex really matter? Explaining intraspecies variation in ocean acidification responses

description: Results - excel file of systematic map of all articles excluded at full text
DOI: 10.6084/m9.figshare.4556017.v1
title: Supplementary data - Articles excluded at full text from Does sex really matter? Explaining intraspecies variation in ocean acidification responses

description: Results - excel file of systematic map of all articles excluded at full text
DOI: 10.6084/m9.figshare.4556011
title: Supplementary data - Articles excluded at title from Does sex really matter? Explaining intraspecies variation in ocean acidification responses

description: Results - excel file of systematic map of all articles excluded at the title stage
DOI: 10.6084/m9.figshare.4556011.v1
title: Supplementary data - Articles excluded at title from Does sex really matter? Explaining intraspecies variation in ocean acidification responses

description: Results - excel file of systematic map of all articles excluded at the title stage
DOI: 10.6084/m9.figshare.4555996
title: Supplementary data - Articles scored at full text and extracted data from Does sex really matter? Explaining intraspecies variation in ocean acidification responses

description: Results - excel file of systematic map of all articles excluded included within the systematic map with data extracted and included in the current manuscript
DOI: 10.6084/m9.figshare.4555996.v1
title: Supplementary data - Articles scored at full text and extracted data from Does sex really matter? Explaining intraspecies variation in ocean acidification responses

description: Results - excel file of systematic map of all articles excluded included within the systematic map with data extracted and included in the current manuscript
DOI: 10.6084/m9.figshare.4555987
title: Supplementary data - Articles excluded at abstract from Does sex really matter? Explaining intraspecies variation in ocean acidification responses

description: Results - excel file of systematic map of all articles excluded at the abstract stage
DOI: 10.6084/m9.figshare.4555987.v1
title: Supplementary data - Articles excluded at abstract from Does sex really matter? Explaining intraspecies variation in ocean acidification responses

description: Results - excel file of systematic map of all articles excluded at the abstract stage
DOI: 10.6084/m9.figshare.4555852
title: “Fluid Dynamics Appearing during Simulated Microgravity Using Random Positioning Machines”, Figure Data

description: Data published in “Fluid Dynamics Appearing during Simulated Microgravity Using Random Positioning Machines” by Simon L. Wuest, Philip Stern, Ernesto Casartelli and Marcel Egli in 2017. The data contains the raw data plotted in the figures (Fig 3 to Fig 7).
DOI: 10.6084/m9.figshare.4555894
title: Supplementary Material for "Improving Robot Motor Learning with Negatively Valenced Reinforcement Signals"

description: The Training and Testing sets were used to train, test the solutions of the genetic algorithm used for hyperparameter optimisation. The Validation set was used to run 10 random initializations for the best 4 hyperparameter sets.<br><br>Results for the 10 random initializations of the 4 best hyperparameter sets, these files were used to produce the results of the tables 3, 4 and 5. <br><br>Average result per metric for the 4 best hyperparameters sets per condition. These results were used to produce figure 4, 5 and 6.<br><br>Commands used to compute two-ways ANOVA and multiple comparisons in Matlab 2015a.<br><br>All figures included in the paper and supplementary material document as zip files.<br><br><b>Reference</b><br>Navarro-Guerrero, N., Lowe, R., & Wermter, S. (2017). Improving Robot Motor Learning with Negatively Valenced Reinforcement Signals. Frontiers in Neurorobotics, 11(10). https://doi.org/10.3389/fnbot.2017.00010<br><br><b>Contact:</b><br>For information please see the paper. For specific questions regarding the paper please contact Nicolás Navarro-Guerrero .
DOI: 10.6084/m9.figshare.4555843
title: Supplementary Material for: Salivary Testosterone during the Minipuberty of Infancy

description: <i>Background:</i> The hypothalamic-pituitary-gonadal axis is transiently activated during the postnatal months in boys, a phenomenon termed “minipuberty” of infancy, when serum testosterone (T) increases to pubertal levels. Despite high circulating T there are no signs of virilization. We hypothesize that free T as measured in saliva is low, which would explain the absence of virilization. <i>Methods:</i> We measured serum total T and free T in saliva using liquid chromatography-tandem mass spectrometry (LC-MS/MS) in 30 infant boys, aged 1–6 months, and in 12 adolescents, aged 11–17 years. <i>Results:</i> Total serum T in all infants was, as expected, high (172 ± 78 ng/dL) while salivary T was low (7.7 ± 4 pg/mL or 0.45 ± 0.20%). In contrast, salivary T in the adolescents was much higher (41 ± 18 pg/mL or 1.3 ± 0.36%) in relation to their total serum T (323 ± 117 ng/dL). We provide for the first time reference data for salivary T in infants. <i>Conclusion:</i> Measurement of salivary T by LC-MS/MS is a promising noninvasive technique to reflect free T in infants. The low free T explains the absence of virilization. The minipuberty of infancy is more likely of intragonadal than peripheral significance.
DOI: 10.6084/m9.figshare.4555894.v1
title: Supplementary Material for "Improving Robot Motor Learning with Negatively Valenced Reinforcement Signals"

description: The Training and Testing sets were used to train, test the solutions of the genetic algorithm used for hyperparameter optimisation. The Validation set was used to run 10 random initializations for the best 4 hyperparameter sets.<br><br>Results for the 10 random initializations of the 4 best hyperparameter sets, these files were used to produce the results of the tables 3, 4 and 5. <br><br>Average result per metric for the 4 best hyperparameters sets per condition. These results were used to produce figure 4, 5 and 6.<br><br>Commands used to compute two-ways ANOVA and multiple comparisons in Matlab 2015a.<br><br>All figures included in the paper and supplementary material document as zip files.<br><br><b>Reference</b><br>Navarro-Guerrero, N., Lowe, R., & Wermter, S. (2017). Improving Robot Motor Learning with Negatively Valenced Reinforcement Signals. Frontiers in Neurorobotics, 11(10). https://doi.org/10.3389/fnbot.2017.00010<br><br><b>Contact:</b><br>For information please see the paper. For specific questions regarding the paper please contact Nicolás Navarro-Guerrero .
DOI: 10.6084/m9.figshare.4555852.v2
title: “Fluid Dynamics Appearing during Simulated Microgravity Using Random Positioning Machines”, Figure Data

description: Data published in “Fluid Dynamics Appearing during Simulated Microgravity Using Random Positioning Machines” by Simon L. Wuest, Philip Stern, Ernesto Casartelli and Marcel Egli in 2017. The data contains the raw data plotted in the figures (Fig 3 to Fig 7).
DOI: 10.6084/m9.figshare.4555837
title: Supplementary Material for: Posterior versus Anterior Circulation Stroke in Young Adults: A Comparative Study of Stroke Aetiologies and Risk Factors in Stroke among Young Fabry Patients (sifap1)

description: <i>Background:</i> Although 20-30% of all strokes occur in the posterior circulation, few studies have explored the characteristics of patients with strokes in the posterior compared to the anterior circulation so far. Especially data on young patients is missing. <i>Methods:</i> In this secondary analysis of data of the prospective multi-centre European sifap1 study that investigated stroke and transient ischemic attack (TIA) patients aged 18-55 years, we compared vascular risk factors, stroke aetiology, presence of white matter hyperintensities (WMH) and cerebral microbleeds (CMB) between patients with ischaemic posterior circulation stroke (PCS) and those having suffered from anterior circulation stroke (ACS) based on cerebral MRI. <i>Results:</i> We diagnosed PCS in 612 patients (29.1%, 407 men, 205 women) and ACS in 1,489 patients (70.9%). Their age (median 46 vs. 47 years, <i>p</i> = 0.205) and stroke severity (modified Rankin Scale: both 2, <i>p</i> = 0.375, Barthel Index 90 vs. 85, <i>p</i> = 0.412) were similar. PCS was found to be more frequent among the male gender (66.5 vs. 60.1% with ACS, <i>p</i> = 0.003). Vertebral artery (VA) dissection was more often the cause of PCS (16.8%) than was carotid artery dissection of ACS (7.9%, <i>p</i> &lt; 0.001). Likewise, small vessel disease (Trial of Org 10172 in Acute Stroke Treatment [TOAST] = 3, PCS: 14.7%, ACS: 11.8%) and stroke of other determined aetiology (TOAST = 4, PCS: 24.5%, ACS: 16.0%) were more frequent in those with PCS. Furthermore, patent foramen ovale (PFO; PCS: 31.1%, ACS: 25.4%, <i>p</i> = 0.029) was more often detected in patients with PCS. In contrast, large-artery atherosclerosis (TOAST = 1, PCS: 15.4%, ACS: 22.2%) and cardio-embolic stroke (TOAST = 2, PCS: 15.6%, ACS: 18.0%) were less frequent in those with PCS (<i>p</i> &lt; 0.001) as were preceding cerebrovascular events (10.1 vs. 14.1%, <i>p</i> = 0.014), TIA (4.8 vs. 7.7%, <i>p</i> = 0.016) and smoking (53.2 vs. 61.0%, <i>p</i> = 0.001). The presence, extent, and location of WMH and CMB did not differ between the 2 groups. <i>Conclusions:</i> Our data suggested a different pattern of aetiology and risk factors in young patients with PCS compared to those with ACS. These findings especially call for a higher awareness of VA dissection and potentially for more weight of a PFO as a risk factor in young patients with PCS. Clinical trial registration-URL: http://www.clinicaltrials.gov; NCT00414583.
DOI: 10.6084/m9.figshare.4555852.v1
title: Data in Figures

description: Data published in “Fluid Dynamics Appearing during Simulated Microgravity Using Random Positioning Machines” by Simon L. Wuest, Philip Stern, Ernesto Casartelli and Marcel Egli in 2017. The data contains the raw data plotted in the figures (Fig 3 to Fig 7).
DOI: 10.6084/m9.figshare.4555822
title: Supplementary Material for: The Intracranial-B2LEED3S Score and the Risk of Intracranial Hemorrhage in Ischemic Stroke Patients Under Antiplatelet Treatment

description: <i>Background:</i> Chronic antiplatelet therapy in the post-acute phase of non-cardioembolic ischemic stroke is limited by the risk of intracranial hemorrhage (ICH) complications. <i>Methods:</i> We developed an ICH risk score based on the PERFORM trial cohort (n = 19,100), which included patients with a non-cardioembolic ischemic stroke or transient ischemic attack, and externally validated this score in one contemporary trial of very similar size and inclusion criteria, the PRoFESS trial (n = 20,332 patients). Outcome was ICH over 2 years. A Cox proportional-hazard regression analysis identified risk factors. Discrimination was quantified with c-statistics and calibration was assessed by comparing predicted and observed ICH risk in PERFORM and PRoFESS. <i>Results:</i> ICH occurred within 2 years in 263 (1.4%) patients in PERFORM trial and in 246 (1.2%) patients in PRoFESS trial. A 13-point score based on 9 items (Intracranial-B2LEED3S score - low body mass index, blood pressure, lacune, elderly, Asian ethnicity, coronary artery or cerebrovascular disease history, dual antithrombotic agent or oral anticoagulant, gender) was derived from the PERFORM trial. In PERFORM, the observed 2-year ICH risk varied from 0.75% in low-risk (score ≤2) to 2.44% in high-risk patients (score ≥5) with an acceptable calibration but a low discrimination both in PERFORM (c-statistic 0.64, 95% CI 0.61-0.68) and on external validation in PRoFESS (0.58, 95% CI 0.55-0.62). <i>Conclusion:</i> The Intracranial-B2LEED3S score helps identify patients who are at a high risk of bleeding. However, other variables need to be identified to improve the score (e.g., microbleeds) (Clinical Trial Registration Information ISRCTN66157730). URL: http://www.isrctn.com/ISRCTN66157730?totalResults=5&pageSize=10&page=1&searchType=basic-search&offset=3&q=&filters=conditionCategory%3ACirculatory+System%2CrecruitmentCountry%3ATaiwan%2CrecruitmentCountry%3AAustria&sort=.
DOI: 10.6084/m9.figshare.4555825
title: McanallyMorrisBestData.zip

description: Raw data files for Mcanally, Morris and Best, PLOS ONE<br>See readme.txt files for information<br>
DOI: 10.6084/m9.figshare.4555783
title: Planetary wave index

description: The data provided at this page includes the planetary wave index (PWI) of Irving and Simmonds (2015), the zonal wave three (ZW3) index of Raphael (2004) and a simple meridional index (MI) that is the average magnitude of the meridional wind over the interval 40-70S.<br><br>All three were calculated using monthly timescale 500 hPa meridional wind (for PWI and MI) or 500 hPa geopotential (for ZW3) data from the ERA-Interim project:<br>http://apps.ecmwf.int/datasets/data/interim-full-moda/levtype=pl/<br><br>The code referred to in the global history attribute of each file can be found at:<br>https://github.com/DamienIrving/climate-analysis<br><br>and the details of the software environment in which that code was run at:<br>https://anaconda.org/DamienIrving/wisconsin/files<br><br>I've also been playing around with some basic visualisation and analysis of the data, which can be found at:<br>https://github.com/DamienIrving/climate-analysis/blob/master/development/wisconsin.ipynb<br><br><br>Irving D, Simmonds I (2015). A novel approach to diagnosing Southern Hemisphere planetary wave activity and its influence on regional climate variability. <em>Journal of Climate</em>. 28, 9041-9057. doi:10.1175/JCLI-D-15-0287.1<br><br>Raphael M (2004). A zonal wave 3 index for the Southern Hemisphere. <i>Geophysical Research Letters</i>, 31, L23212. doi:10.1029/2004GL020365<br><br><br>
DOI: 10.6084/m9.figshare.4555513
title: Köppen’s climate classification map for Brazil

description: This set of files contains the original paper "Köppen’s climate classification map for Brazil", the climate map in rasterfile format and a spreadsheet with climate database for each of Brazilian municipalities. The values ​​of altitude, temperature, and rainfall represent the average of the pixels (100 m) within the perimeter of each municipality. Only the most representative Köppen climate type was considered in each municipality.
DOI: 10.6084/m9.figshare.4555510
title: Stereo camera reconstruction of rough terrain

description: This video shows a short clip of a 3D reconstruction of rough terrain by a stereo RGB camera setup.
DOI: 10.6084/m9.figshare.4555504
title: Dataset of gamma-ray counts by S7 smartphone

description: Gamma ray counts by Samsung S7 smart-phone<br><br>In:<br>Alessandri S. [DIS-16-0062] In the field Feasibility of a Simple Method to Check for Radioactivity in Commodities and in the Environment. PLOS Currents Disasters. 2017 Jan 15 . Edition 1. doi: 10.1371/currents.dis.07059b54a787dcfcf53ac46ab5a6a809.<br>
DOI: 10.6084/m9.figshare.4555507
title: Summary of smartphone data-set for graphs and tables

description: Spreadsheet summarizing the smartphone and NaI(Tl) data for graphs and tables in:<br><br>Alessandri S. [DIS-16-0062] In the field Feasibility of a Simple Method to Check for Radioactivity in Commodities and in the Environment. PLOS Currents Disasters. 2017 Jan 15 . Edition 1. doi: 10.1371/currents.dis.07059b54a787dcfcf53ac46ab5a6a809.
DOI: 10.6084/m9.figshare.4555498
title: Dataset of gamma-ray counts by A3 smartphone

description: Gamma radiation counts by Samsung A3 smart-phone.<br><br>In:<br>Alessandri S. [DIS-16-0062] In the field Feasibility of a Simple Method to Check for Radioactivity in Commodities and in the Environment. PLOS Currents Disasters. 2017 Jan 15 . Edition 1. doi: 10.1371/currents.dis.07059b54a787dcfcf53ac46ab5a6a809.<br>
DOI: 10.6084/m9.figshare.4555501
title: Dataset of gamma-ray counts by S4 smartphone

description: Gamma ray counts by Samsung S4 smart-phone.<br><br>in:<br>Alessandri S. [DIS-16-0062] In the field Feasibility of a Simple Method to Check for Radioactivity in Commodities and in the Environment. PLOS Currents Disasters. 2017 Jan 15 . Edition 1. doi: 10.1371/currents.dis.07059b54a787dcfcf53ac46ab5a6a809.<br>
DOI: 10.6084/m9.figshare.4555507.v1
title: Summary of smartphone data-set for graphs and tables

description: Spreadsheet summarizing the smartphone and NaI(Tl) data for graphs and tables in:<br><br>Alessandri S. [DIS-16-0062] In the field Feasibility of a Simple Method to Check for Radioactivity in Commodities and in the Environment. PLOS Currents Disasters. 2017 Jan 15 . Edition 1. doi: 10.1371/currents.dis.07059b54a787dcfcf53ac46ab5a6a809.
DOI: 10.6084/m9.figshare.4555492
title: cruaud_et_al_2017_scientific_reports_datasets.zip

description: sampling table and phylip files with COI, Cytb and EF sequence data<br>