cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.qt352sg
title: Data from: New determination of prey and parasite species for Northern Indian Ocean blue whales

description: Blue whales are little studied, face significant anthropogenic threats and
 within the Northern Indian Ocean, have a restricted range, making them an
 archetype for conservation needs of megafauna around the world. We studied
 feeding behaviour of blue whales using dietary DNA metabarcoding of faecal
 samples. While globally blue whale populations feed predominantly on
 Euphausiidae, 87 % of prey DNA amplicons extracted from faecal samples
 from this population were sergestid shrimp, demonstrating that blue whales
 can locate and feed on dense swarms of other types of prey when they
 occur. Within the Indian Ocean sergestids are present within the top 300
 m, which correlates with the deep scattering layer observed by
 hydroacoustics. Studies suggest that this requirement to dive deeper in
 search of prey likely explains the prevalence of fluke up diving within
 this population of blue whales relative to other parts of the globe.
 Furthermore, this study revealed the presence of acanthocephalan
 endoparasites within the stomach and intestines of the Northern Indian
 Ocean blue whales. This represents the first record of Acanthocephala in
 blue whales in the Northern Indian Ocean and highlights the need for
 further studies on both the ecto- and endoparasitic flora and monitoring
 of health of these cetaceans for their management and conservation.
description: DNA sequences amplified
 from blue whale scatsFastq files of DNA
 sequences amplified from blue whale scats.BlueWhaleDietSequencingRawData.zip
DOI: 10.5061/dryad.80hs7k1
title: Data from: Density-independent predation affects migrants and residents equally in a declining partially migratory elk population

description: Migration is expected to benefit individuals through exposure to higher
 quality forage and reducing predation rates more than non-migratory
 conspecifics. Previous studies of partially migratory ungulates (with
 migrant and resident individuals) have focused on bottom–up factors
 regulating resident and migrant segments, yet differential predation
 between strategies could also be a density-dependent regulatory mechanism.
 Our study tested for density-dependence in mortality, as well as
 mechanisms of bottom–up or top–down regulation in the resident and migrant
 portions of the partially migratory Ya Ha Tinda elk population. We tested
 for density dependence in adult female and juvenile survival rates, and
 then discriminated between predator- and food-regulation hypotheses by
 testing for density-dependence amongst mortality causes for adult female
 elk. Notably, the population declined almost 70% from near previously
 published estimates of carrying capacity over 10 years, providing ideal
 conditions to test for density dependence. In contrast to predictions, we
 found only weak support for density dependence in adult survival and
 juvenile survival. We also found few differences between migrant and
 resident elk in adult or juvenile survival, though juvenile survival
 differences were biologically significant. Predation by humans and grizzly
 bears was density dependent, but similar between migratory strategies.
 Predation by wolves was the leading known cause of mortality, yet remained
 constant with declining elk density equally for both migrant and resident
 elk, indicating wolf predation was density-independent. Instead of being
 strongly regulated by food or predation, instead, we found adult female
 survival was driven by density-independent predation and climatic factors.
 The few differences between migratory strategies suggest equivalent
 fitness payoffs for migrants and residents. This population is being
 limited by density-independent predation leading to declines of both
 migratory strategies. Our results challenge classical predator–prey
 theory, and call for better integration between predator–prey and
 migration theory.
description: elk_survAdult female elk survival dataset.calf_survmark-resight calf survival data.Bayesian_calf_survival_RscriptR code for Bayesian mark-resight calf survival estimation.logisticJAGSJAGS model code for Bayesian calf survival analysis.
DOI: 10.5061/dryad.2tg6967
title: Data from: In silico site-directed mutagenesis informs species-specific predictions of chemical susceptibility derived from the Sequence Alignment to Predict Across Species Susceptibility (SeqAPASS) tool

description: Chemical hazard assessment requires extrapolation of information from
 model organisms to all species of concern. The Sequence Alignment to
 Predict Across Species Susceptibility (SeqAPASS) tool was developed as a
 rapid, cost effective method to aid cross-species extrapolation of
 susceptibility to chemicals acting on specific protein targets through
 evaluation of protein structural similarities and differences. The
 greatest resolution for extrapolation of chemical susceptibility across
 species involves comparisons of individual amino acid residues at key
 positions involved in protein-chemical interactions. However, a lack of
 understanding of whether specific amino acid substitutions among species
 at key positions in proteins affect interaction with chemicals made manual
 interpretation of alignments time consuming and potentially inconsistent.
 Therefore, this study used in silico site-directed mutagenesis coupled
 with docking simulations of computational models for acetylcholinesterase
 (AChE) and ecdysone receptor (EcR) to investigate how specific amino acid
 substitutions impact protein-chemical interaction. This study found that
 computationally derived substitutions in identities of key amino acids
 caused no change in protein-chemical interaction if residues share the
 same side chain functional properties and have comparable molecular
 dimensions, while differences in these characteristics can change
 protein-chemical interaction. These findings were considered in the
 development of capabilities for automatically generated species-specific
 predictions of chemical susceptibility in SeqAPASS. These predictions for
 AChE and EcR were shown to agree with SeqAPASS predictions comparing the
 primary sequence and functional domain sequence of proteins for more than
 90 % of the investigated species, but also identified dramatic
 species-specific differences in chemical susceptibility that align with
 results from standard toxicity tests. These results provide a compelling
 line-of-evidence for use of SeqAPASS in deriving screening level,
 species-specific, susceptibility predictions across broad taxonomic groups
 for application to human and ecological hazard assessment.
description: Supplementary
 DataSupplementary Data
 File
DOI: 10.5281/zenodo.16749489
title: Sarcopenia, Obesity, and Sarcopenic Obesity in Relation to Functional Limitations in Older Adults

description: Background/Objectives: Sarcopenia, obesity, and sarcopenic obesity (SO) are common in older adults and may be associated with functional limitations in Basic (BADL) and Instrumental (IADL) Activities of Daily Living. This study aimed to evaluate the association between body composition phenotypes and BADL/IADL limitations among older adults. Methods: A cross-sectional study included 440 community-dwelling adults aged ≥60 years (281 women, 159 men; mean age 74.7 ± 7.8 years). Sarcopenia was diagnosed according to EWGSOP2 criteria, obesity was defined as Percent Body Fat > 42% in women and >30% in men, and SO was classified based on the ESPEN/EASO recommendations. The reference phenotype was ‘non-sarcopenic, non-obese’. Functional status was evaluated using the Katz and Lawton scales, with limitations defined as BADL ≤ 5 and IADL ≤ 26 points, respectively. Multivariate logistic regression was performed to determine associations between body composition phenotypes and BADL/IADL limitations.
DOI: 10.5281/zenodo.16749490
title: Sarcopenia, Obesity, and Sarcopenic Obesity in Relation to Functional Limitations in Older Adults

description: Background/Objectives: Sarcopenia, obesity, and sarcopenic obesity (SO) are common in older adults and may be associated with functional limitations in Basic (BADL) and Instrumental (IADL) Activities of Daily Living. This study aimed to evaluate the association between body composition phenotypes and BADL/IADL limitations among older adults. Methods: A cross-sectional study included 440 community-dwelling adults aged ≥60 years (281 women, 159 men; mean age 74.7 ± 7.8 years). Sarcopenia was diagnosed according to EWGSOP2 criteria, obesity was defined as Percent Body Fat > 42% in women and >30% in men, and SO was classified based on the ESPEN/EASO recommendations. The reference phenotype was ‘non-sarcopenic, non-obese’. Functional status was evaluated using the Katz and Lawton scales, with limitations defined as BADL ≤ 5 and IADL ≤ 26 points, respectively. Multivariate logistic regression was performed to determine associations between body composition phenotypes and BADL/IADL limitations.
DOI: 10.5061/dryad.5726103
title: Data from: The demographic history of Atlantic salmon (Salmo salar) across its distribution range reconstructed from approximate Bayesian computations

description: Understanding the dual roles of demographic and selective processes in the
 buildup of population divergence is one of the most challenging tasks in
 evolutionary biology. Here, we investigated the demographic history of
 Atlantic Salmon across the entire species range using 2035 anadromous
 individuals from North America and Eurasia. By combining results from
 admixture graphs, geo-genetic maps and an Approximate Bayesian Computation
 (ABC) framework, we validated previous hypotheses pertaining to secondary
 contact between European and Northern American populations, but also
 identified secondary contacts in European populations from different
 glacial refugia. We further identified the major sources of admixture from
 the southern range of North America into more northern populations along
 with a strong signal of secondary gene flow between genetic regional
 groups. We hypothesize that these patterns reflects the spatial
 redistribution of ancestral variation across the entire North American
 range. Results also support a role for linked selection and differential
 introgression that likely played an under-appreciated role in shaping the
 genomic landscape of species in the Northern hemisphere. We conclude that
 studies between partially isolated populations should systematically
 include heterogeneity in selective and introgressive effects among loci to
 perform more rigorous demographic inferences of the divergence process.
description: row data used for all
 analysesgenotype data in ped
 file format used in "The demographic history of Atlantic Salmon
 (Salmo salar) across its distribution range reconstructed from Approximate
 Bayesian Computations, Rougemont, Quentin, Bernatchez,
 Louis"ped_files.tar.gz
DOI: 10.5061/dryad.rf7317t
title: Data from: A penalized likelihood framework for high- dimensional phylogenetic comparative methods and an application to new-world monkeys brain evolution

description: Working with high-dimensional phylogenetic comparative datasets is
 challenging because likelihood-based multivariate methods suffer from low
 statistical performances as the number of traits p approaches the number
 of species n and because some computational complications occur when p
 exceeds n. Alternative phylogenetic comparative methods have recently been
 proposed to deal with the large p small n scenario but their use and
 performances are limited. Here we develop a penalized likelihood framework
 to deal with high-dimensional comparative datasets. We propose various
 penalizations and methods for selecting the intensity of the penalties. We
 apply this general framework to the estimation of parameters (the
 evolutionary trait covariance matrix and parameters of the evolutionary
 model) and model comparison for the high-dimensional multivariate Brownian
 (BM), Early-burst (EB), Ornstein-Uhlenbeck (OU) and Pagel’s lambda models.
 We show using simulations that our penalized likelihood approach
 dramatically improves the estimation of evolutionary trait covariance
 matrices and model parameters when p approaches n, and allows for their
 accurate estimation when p equals or exceeds n. In addition, we show that
 penalized likelihood models can be efficiently compared using Generalized
 Information Criterion (GIC). We implement these methods, as well as the
 related estimation of ancestral states and the computation of phylogenetic
 PCA in the R package RPANDA and mvMORPH. Finally, we illustrate the
 utility of the new proposed framework by evaluating evolutionary models
 fit, analyzing integration patterns, and reconstructing evolutionary
 trajectories for a high-dimensional 3-D dataset of brain shape in the New
 World monkeys. We find a clear support for an Early-burst model suggesting
 an early diversification of brain morphology during the ecological
 radiation of the clade. Penalized likelihood offers an efficient way to
 deal with high-dimensional multivariate comparative data.
description: Supplementary
 MaterialThis Supplementary file
 is composed of 5 parts. In 1), 2) and 3), we provide supplementary results
 from our simulation analyses. In 4) we illustrate how to compute standard
 errors of parameters estimates for the penalized likelihood in R, and in
 5) we discuss how to efficiently account for within-species variation and
 measurement error.Supplementary_Material_Clavel_et_al.docxSupplementary R codesR codes providing the simulations procedures and miscellaneous functions (warps reconstructed changes, ...).R_codes.zip
DOI: 10.15468/dl.udfas8
title: Occurrence Download

description: A dataset containing 445132 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonicera xylosteum"
 ]
}

 The dataset includes 445132 records from 1628 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001496-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20350/digitalcsic/17891
title: Comunidades de hongos de los suelos y plantas de los municipios de Villarrodrigo, Bedmar y Garcíez, y Huesa. Proyecto Bioforeste

description: Este conjunto de datos se enmarca en la Acción A3 del proyecto BIOFORESTE y corresponde a los hitos 3 y 4, centrados en el estudio del ecosistema edáfico y su relación con la gestión forestal sostenible en la provincia de Jaén. El objetivo principal del dataset es aportar información de base sobre la diversidad de hongos del suelo y de los hongos asociados a plantas leñosas en montes sometidos a diferentes tipos de manejo forestal. Los datos proceden de muestreos realizados en los términos municipales de Villarrodrigo, Bedmar-Garcíez y Huesa, en parcelas de actuación, control y referencia, vinculadas a planes piloto de aclareo de pinar, ganadería regenerativa y conservación de hábitats bien conservados. El dataset incluye información obtenida antes de la ejecución de las actuaciones forestales y, en el caso de Villarrodrigo, también tras la intervención, contribuyendo a evaluar la respuesta inicial del ecosistema edáfico a dichas acciones. El conjunto de datos proporciona un inventario de comunidades fúngicas presentes en suelos forestales y en raíces de plantas leñosas de interés micológico, incluyendo hongos micorrícicos, saprótrofos y patógenos. Esta información constituye una referencia para la evaluación del estado de salud del suelo, el seguimiento de los efectos de la gestión forestal y la identificación del potencial micológico de los montes estudiados, en coherencia con los objetivos de aplicación del conocimiento científico a la gestión sostenible de los recursos forestales del proyecto BIOFORESTE.
DOI: 10.20350/digitalcsic/17892
title: Detectives de crisis climáticas y medioambientales: Guía para profesorado. Actividades prácticas de investigación para alumnado de secundaria
DOI: 10.15468/dl.9z8qzb
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.48_1",
 "TaxonKey is Belomicrus"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005948-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qywge9
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Festuca valesiaca",
 "Year 1960-2026"
 ]
}

 The dataset includes 48 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005946-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6847w
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Paraguay",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alouatta caraya"
 ]
}

 The dataset includes 103 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005952-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gassbb
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((88.60111000000001 24.825288, 88.523742 24.819711, 88.4483 24.803119, 88.37665800000001 24.775923, 88.310596 24.738802, 88.251749 24.692676, 88.20157 24.638691, 88.161289 24.578185, 88.131891 24.512656, 88.11408299999999 24.443723, 88.10828600000001 24.373089, 88.11462299999999 24.302493, 88.132919 24.233672, 88.162705 24.168317, 88.20323399999999 24.108031, 88.25349900000001 24.054289, 88.31225999999999 24.008407, 88.378074 23.971505, 88.44932799999999 23.944484, 88.524283 23.928004, 88.60111000000001 23.922465, 88.677937 23.928004, 88.752892 23.944484, 88.824146 23.971505, 88.88996 24.008407, 88.94872100000001 24.054289, 88.998986 24.108031, 89.03951499999999 24.168317, 89.069301 24.233672, 89.087597 24.302493, 89.093934 24.373089, 89.088137 24.443723, 89.070329 24.512656, 89.040931 24.578185, 89.00064999999999 24.638691, 88.95047099999999 24.692676, 88.89162399999999 24.738802, 88.82556200000001 24.775923, 88.75391999999999 24.803119, 88.678478 24.819711, 88.60111000000001 24.825288))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005947-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31127128
title: Data for: Desert amphibian calling effort changes in response to monsoonal precipitation at constructed but not natural waters

description: Raw dataset used in CLMM analysis for "Desert amphibian calling effort changes in response to monsoonal precipitation at constructed but not natural waters"<br>
DOI: 10.6084/m9.figshare.31127128.v1
title: Data for: Desert amphibian calling effort changes in response to monsoonal precipitation at constructed but not natural waters

description: Raw dataset used in CLMM analysis for "Desert amphibian calling effort changes in response to monsoonal precipitation at constructed but not natural waters"<br>
DOI: 10.15468/dl.n4zy8w
title: Occurrence Download

description: A dataset containing 3875 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bredia"
 ]
}

 The dataset includes 3875 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005950-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7937/fwv2-dt74
title: The University of California San Diego annotated post-treatment high-grade glioma multimodal MRI dataset (UCSD-PTGBM)

description: While there is a growing number of publicly available pre-operative MRI datasets for high-grade gliomas, very few post-operative datasets are available. Here we present the University of California San Diego post-operative high-grade glioma multimodal MRI (UCSD-PTGBM) dataset. The UCSD-PTGBM dataset includes 243 timepoints from 178 subjects (mean age 56 +/- 13 years [std], 116 men, 62 women) with histopathologically-proven high-grade gliomas who were imaged with an advanced brain tumor protocol on 3 Tesla MRI scanners. Sequences include standard 3D imaging, as well as multishell diffusion and perfusion imaging techniques (ASL and DSC), and neuroradiologist approved voxelwise tumor segmentations. The dataset also includes IDH mutation status and MGMT promoter methylation status, as well as overall survival and progression free survival information for several cases. We hope that researchers around the world will use these data to continue to improve analysis of post-operative MRI on high grade glioma patients.
DOI: 10.3886/e244569
title: Structural Transformation, Technological Innovation and Digital Services Trade

description: Dataset for a research paper entitled "Structural Transformation, Technological Innovation and Digital Services Trade".<b></b>
DOI: 10.3886/e244569v1
title: Structural Transformation, Technological Innovation and Digital Services Trade

description: Dataset for a research paper entitled "Structural Transformation, Technological Innovation and Digital Services Trade".<b></b>
DOI: 10.15468/dl.7pwp8f
title: Occurrence Download

description: A dataset containing 359215 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aquilegia"
 ]
}

 The dataset includes 359215 records from 1920 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005894-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28869656
title: Synoptic patterns R.csv

description: Recharge events at Willi Willi, NSW and their synoptic patterns
DOI: 10.6084/m9.figshare.28869656.v1
title: Synoptic patterns R.csv

description: Recharge events at Willi Willi, NSW and their synoptic patterns
DOI: 10.15468/dl.mua38f
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Catches or strandings of Balaenoptera omurai"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001497-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.