cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.m9uwjs
title: Occurrence Download

description: A dataset containing 57689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 1990",
 "HasCoordinate is true",
 "Geometry MULTIPOLYGON (((6 5, 6 4, 7 4, 7 6, 6 6, 5 6, 5 5, 6 5)), ((-8 5, -8 6, -9 6, -10 6, -10 5, -9 5, -8 5)), ((45 14, 45 15, 44 15, 44 14, 45 14)), ((13 8, 13 7, 12 7, 12 6, 13 6, 14 6, 15 6, 15 5, 16 5, 16 6, 17 6, 18 6, 18 5, 19 5, 20 5, 20 4, 21 4, 21 2, 22 2, 23 2, 23 4, 24 4, 24 5, 25 5, 26 5, 27 5, 28 5, 29 5, 30 5, 31 5, 32 5, 33 5, 34 5, 34 4, 35 4, 35 2, 36 2, 37 2, 38 2, 38 1, 39 1, 39 -2, 40 -2, 40 -3, 41 -3, 41 -2, 42 -2, 42 9.998757e-11, 43 9.998757e-11, 43 1, 44 1, 44 2, 45 2, 46 2, 46 3, 47 3, 47 4, 48 4, 48 6, 49 6, 49 8, 48 8, 47 8, 46 8, 45 8, 45 10, 44 10, 43 10, 42 10, 42 11, 41 11, 41 12, 40 12, 40 16, 39 16, 39 17, 38 17, 38 15, 37 15, 37 14, 36 14, 35 14, 35 13, 34 13, 34 11, 33 11, 32 11, 32 12, 31 12, 31 13, 30 13, 29 13, 29 12, 30 12, 30 11, 29 11, 29 10, 28 10, 27 10, 27 11, 26 11, 25 11, 25 14, 24 14, 23 14, 22 14, 22 13, 21 13, 21 11, 22 11, 22 10, 21 10, 20 10, 20 11, 19 11, 18 11, 18 12, 17 12, 16 12, 15 12, 15 13, 14 13, 13 13, 12 13, 11 13, 10 13, 9 13, 8 13, 7 13, 6 13, 5 13, 4 13, 3 13, 2 13, 1 13, 9.998757e-11 13, 9.998757e-11 14, -1 14, -2 14, -2 15, -3 15, -3 16, -4 16, -4 15, -5 15, -6 15, -7 15, -8 15, -8 14, -9 14, -10 14, -11 14, -12 14, -12 15, -13 15, -14 15, -15 15, -15 17, -16 17, -16 16, -17 16, -17 12, -16 12, -15 12, -15 10, -14 10, -14 9, -13 9, -13 10, -12 10, -11 10, -10 10, -10 9, -9 9, -8 9, -7 9, -6 9, -5 9, -4 9, -4 10, -3 10, -3 9, -2 9, -1 9, 9.998757e-11 9, 1 9, 1 8, 2 8, 2 6, 3 6, 3 8, 4 8, 5 8, 6 8, 6 7, 7 7, 8 7, 9 7, 10 7, 10 8, 11 8, 12 8, 13 8), (9 8, 8 8, 8 9, 7 9, 7 10, 8 10, 8 11, 9 11, 9 10, 10 10, 10 9, 9 9, 9 8), (39 8, 39 5, 38 5, 37 5, 36 5, 35 5, 35 6, 36 6, 36 8, 37 8, 38 8, 38 9, 39 9, 39 10, 40 10, 40 9, 40 8, 39 8), (41 9.998757e-11, 41 1, 42 1, 42 9.998757e-11, 41 9.998757e-11), (40 4, 41 4, 41 3, 40 3, 40 4), (42 4, 43 4, 43 3, 42 3, 42 4), (-16 13, -16 14, -15 14, -15 13, -16 13), (44 9, 44 6, 43 6, 42 6, 42 8, 43 8, 43 9, 44 9)))"
 ]
}

 The dataset includes 57689 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003595-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r5hmes
title: Occurrence Download

description: A dataset containing 62351 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Schoenus nigricans"
 ]
}

 The dataset includes 62351 records from 782 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003609-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/9vgss-fy877
title: Calreticulin-YFP

description: Correlated light electron microscopy (CLEM) of calreticulin-YFP. The aim of the experiment was to determine whether ribosome associated granules contained calreticulin.
description: <strong>Tilt Series Date:</strong> 2014-10-22</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> INS-1E Pancreatic Cells expressing Calreticulin-YFP</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Zach Freidberg</p>
<strong>Purification / Growth Conditions / Treatment:</strong> INS-1E cells grown on gold finder grids and plunge frozen using the vitrobot III blotted both sides pressure setting 1. Grids coated with fibronectin and 200 nm red fluorescent beads F8763 added to grids before freezing.</p>
description: Files available via S3 at s://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2014-10-22-7/rawdata/</p>tomography7middle.mrc,  Tilt Series (Pixel Size 6.0 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2014-10-22-7/rawdata/tomography7middle.mrc"
        > <i class="download icon"></i> Download </a></p>

        tomography7middle.rec,  Reconstruction (Pixel Size 24.0 nm), 1.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2014-10-22-7/3dimage_47356/tomography7middle.rec"
        > <i class="download icon"></i> Download </a></p>

        tomography7middle_full.rec,  Reconstruction (Pixel Size 0.0 nm), 488.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2014-10-22-7/3dimage_48777/tomography7middle_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fs2jj-41s93
title: COS7

description: Cos7 - not treatment, no transfection
description: <strong>Tilt Series Date:</strong> 2012-01-20</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cells frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and plunge frozen</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-20-6/3dimage_69009/</p>12jan20_C106_2_COS7neg_AT1BT1_0009_full.rec,  Reconstruction (Pixel Size 2.0 nm), 722.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-20-6/3dimage_69009/12jan20_C106_2_COS7neg_AT1BT1_0009_full.rec"
        > <i class="download icon"></i> Download </a></p>

        12jan20_C106_2_COS7neg_AT1BT1_0009.mrc,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-20-6/rawdata/12jan20_C106_2_COS7neg_AT1BT1_0009.mrc"
        > <i class="download icon"></i> Download </a></p>

        12jan20_C106_2_COS7neg_AT1BT1_0009_full.tiff,  file associated to 3D Image #69009, 1.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-20-6/file_16088/12jan20_C106_2_COS7neg_AT1BT1_0009_full.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xrh0m-zbf43
title: Agrobacterium tumefaciens

description: C58 wild type
description: <strong>Tilt Series Date:</strong> 2013-08-01</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 19500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 300uM AS inductant</p>
<strong>Sample Preparation:</strong> Janelia</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-01-40/rawdata/</p>c58_Au_300mM0021.mrc,  Tilt Series (Pixel Size 0.56 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-01-40/rawdata/c58_Au_300mM0021.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_Au_300mM0021_full.rec,  Reconstruction (Pixel Size 2.24 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-01-40/3dimage_29501/c58_Au_300mM0021_full.rec"
        > <i class="download icon"></i> Download </a></p>

        etl2013-08-01-40_slicer19253.png,  more grey marble lines which vaguely resemble the nucleoid like structures seen by Debnath (example: dg2015-10-26-82).  Don't know what this is. -andrew, 543.1 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/etl2013-08-01-40_slicer19253.png"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.rmgghc
title: Occurrence Download

description: A dataset containing 4355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aplocheilichthys lacustris, Lacustricola lacustris, Aplocheilichthys macrurus, Lacustricola macrurus, Aplocheilichthys maculatus, Lacustricola maculatus, Aplocheilichthys mediolateralis, Lacustricola mediolateralis, Aplocheilichthys nigrolateralis, Lacustricola nigrolateralis, Aplocheilichthys omoculatus, Lacustricola omoculatus, Aplocheilichthys rudolfianus, Micropanchax rudolfianus, Aplocheilichthys spilauchen, Aplocheilichthys usanguensis, Lacustricola usanguensis, Aplocheilichthys vitschumbaensis, Lacustricola vitschumbaensis, Aplocheilus panchax, Apricaphanius saourensis, Archiaphyosemion guineense, Aristochromis christyi, Arius africanus, Arius festinus, Arius gigas, Arius latiscutatus, Arius madagascariensis, Arius uncinatus, Arnoglossus imperialis, Arnoldichthys spilopterus, Asprotilapia leptura, Xenotilapia leptura, Astatoreochromis alluaudi, Astatoreochromis straeleni, Astatoreochromis vanderhorsti, Astatotilapia bloyeti, Astatotilapia burtoni, Astatotilapia calliptera, Astatotilapia desfontainii, Astatotilapia paludinosa, Haplochromis paludinosus, Astatotilapia stappersii, Astatotilapia tweddlei, Atherina boyeri, Atherina caspia, Atherinomorus duodecimalis, Atopochilus chabanaudi, Atopochilus christyi, Atopochilus macrocephalus, Atopochilus mandevillei, Atopochilus pachychilus, Atopochilus savorgnani, Atopochilus vogti, Atopodontus adriaensi, Auchenoglanis biscutatus, Auchenoglanis occidentalis, Aulonocara aquilonium, Aulonocara auditor, Aulonocara baenschi, Aulonocara brevinidus, Aulonocara brevirostre, Aulonocara ethelwynnae, Aulonocara gertrudae, Aulonocara guentheri, Aulonocara hueseri, Aulonocara jacobfreibergi, Aulonocara kandeense, Aulonocara kandeensis, Aulonocara koningsi, Aulonocara korneliae, Aulonocara maylandi, Aulonocara nyassae, Aulonocara rostratum, Aulonocara saulosi, Aulonocara stonemani, Aulonocara stuartgranti, Aulonocara trematocephalum, Aulonocranus dewindti, Aurigequula fasciata, Auriglobus modestus, Austroglanis barnardi, Austroglanis gilli, Austroglanis sclateri, Awaous aeneofuscus, Awaous bustamantei, Awaous commersoni, Awaous lateristriga, Awaous macrorhynchus, Bagrus bajad, Bagrus caeruleus, Bagrus degeni, Bagrus docmak, Bagrus filamentosus, Bagrus lubosicus, Bagrus meridionalis, Bagrus orientalis, Bagrus ubangensis, Bagrus urostigma)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((37.1382 -6.9401,28.1382 -6.9401,28.1382 -15.9401,37.1382 -15.9401,37.1382 -6.9401))"
 ]
}

 The dataset includes 4355 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005691-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/7b512-d7753
title: COS7 CHMP4A+VPS4DN

description: Cos7 cells transfected with CHMP4A & VPS4DN constructs
description: <strong>Tilt Series Date:</strong> 2012-01-06</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Constructs provided by Wes Sundquist. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-06-7/3dimage_68861/</p>12jan06_c105_1_4ADNCos7_AT2BT1_0005_full.rec,  Reconstruction (Pixel Size 2.0 nm), 722.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-06-7/3dimage_68861/12jan06_c105_1_4ADNCos7_AT2BT1_0005_full.rec"
        > <i class="download icon"></i> Download </a></p>

        12jan06_c105_1_4ADNCos7_AT2BT1_0005.mrc,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-06-7/rawdata/12jan06_c105_1_4ADNCos7_AT2BT1_0005.mrc"
        > <i class="download icon"></i> Download </a></p>

        12jan06_c105_1_4ADNCos7_AT2BT1_0005_full.tiff,  file associated to 3D Image #68861, 930.7 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-06-7/file_16017/12jan06_c105_1_4ADNCos7_AT2BT1_0005_full.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/51hdp-53a92
title: COS7 VPS4DN+pNLGFP

description: Cos7 cells transfected with VPS4DN (0.5 ug) and pNLGFP provirus construct (4 ug). Sample #C107
description: <strong>Tilt Series Date:</strong> 2012-01-16</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> VPS4DN construct provided by Wes Sundquist. pNLGFP construct provided by Irvin Chen, UCLA. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-16-14/3dimage_68997/</p>12jan16_pNLDN_AT2BT10020_full.rec,  Reconstruction (Pixel Size 2.0 nm), 722.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-16-14/3dimage_68997/12jan16_pNLDN_AT2BT10020_full.rec"
        > <i class="download icon"></i> Download </a></p>

        12jan16_pNLDN_AT2BT10020.mrc,  Tilt Series (Pixel Size 0.5 nm), 677.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-16-14/rawdata/12jan16_pNLDN_AT2BT10020.mrc"
        > <i class="download icon"></i> Download </a></p>

        12jan16_pNLDN_AT2BT10020_full.tiff,  file associated to 3D Image #68997, 1.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-16-14/file_16081/12jan16_pNLDN_AT2BT10020_full.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7avmg-cy225
title: COS7 CHMP4A+VPS4DN

description: Cos7 cells transfected with CHMP4A & VPS4DN constructs
description: <strong>Tilt Series Date:</strong> 2012-01-06</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Constructs provided by Wes Sundquist. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-06-14/3dimage_68875/</p>12jan06_c105_1_4ADNCos7_AT2BT1_0013_full.rec,  Reconstruction (Pixel Size 2.0 nm), 722.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-06-14/3dimage_68875/12jan06_c105_1_4ADNCos7_AT2BT1_0013_full.rec"
        > <i class="download icon"></i> Download </a></p>

        12jan06_c105_1_4ADNCos7_AT2BT1_0013.mrc,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-06-14/rawdata/12jan06_c105_1_4ADNCos7_AT2BT1_0013.mrc"
        > <i class="download icon"></i> Download </a></p>

        12jan06_c105_1_4ADNCos7_AT2BT1_0013_full.tiff,  file associated to 3D Image #68875, 982.5 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-01-06-14/file_16023/12jan06_c105_1_4ADNCos7_AT2BT1_0013_full.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9mh44-wx459
title: Agrobacterium C1 induced at 19C

description: Agro C1, no Ti Plasmid
description: <strong>Tilt Series Date:</strong> 2014-03-26</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown for 24h in liquid at 19C</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
  etl2014-03-26-19_slicer9907.jpg: Agrobacterium tumefaciens .  Ribosome exclusion zone REZ
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-26-19/rawdata/</p>Agro_C10019.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-26-19/rawdata/Agro_C10019.mrc"
        > <i class="download icon"></i> Download </a></p>

        Agro_C10019_full.rec,  Reconstruction (Pixel Size 0.0 nm), 356.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-26-19/3dimage_49452/Agro_C10019_full.rec"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  3.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-26-19/file_11652/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6zj78-anj62
title: Ori5 MA

description: Raw data files of Ori5 MA
description: <strong>Tilt Series Date:</strong> 2014-02-12</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Methylomicrobium alcaliphilum</p>
<strong>Strain:</strong> 20Z-ori5</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -12.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Marina Kalyuzhnaya @ Univ. Washington provided the culture</p>
<strong>Purification / Growth Conditions / Treatment:</strong> P-medium, 3% NaCl, supplemented with 0.2% methylacetate (3rd transfer from methyalcetate plate)</p>
  scy2014-02-12-4_slicer3924.jpg: surface proteins; intra-cytoplasmic membranes
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2014-02-12-4/3dimage_42608/</p>at104_1k.rec,  Reconstruction (Pixel Size 1.92 nm), 141.6 MB  
        
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        atlas10004.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        atlas10004_part121_34.rec,  Reconstruction (Pixel Size 1.92 nm), 623.6 MB  
        
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