cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21233/s4h9-ab98
title: Jianfengling National Forest Park ostracode surface sample dataset

description: Raw data for the Jianfengling National Forest Park ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.20079875.v1
title: Data of the Pearl River.xlsx

description: Population data of the Pearl River fish，environment data of the Pearl River, and traits data of the fish
DOI: 10.17632/ny8g5c7wzp
title: Variables asociadas al logro educativo en tiempos de evaluación estandarizada: un esbozo conceptual

description: Este artículo analiza algunos desarrollos de la literatura sobre el lugar e importancia de las variables asociadas al logro educativo en Educación Superior de Colombia, como condicionante del rendimiento en evaluaciones estandarizadas. Los resultados muestran que pese a la identificación de variables que inciden en el rendimiento, tales como: género, estrato socioeconómico, escolaridad
del padre y la madre, entre otras, al emitir los resultados y hacer el análisis de los mismos, se atribuye el logro académico a dimensiones eminentemente individuales, aisladas de atenuantes como el contexto, capital cultural, grupo socioeconómico y acceso a oportunidades. Si bien las aplicaciones de carácter masivo recogen información sobre variables asociadas al logro educativo, ésta información suele ser analizada y mostrada de forma aislada.
DOI: 10.6084/m9.figshare.13670755.v2
title: 14096 weed seeds were identied by six CNNs

description: The authentic labels, predicted results and confusion matrices of all models (AlexNet, GoogLeNet, VGG16, SqueezeNet, Xception, and NasNet-Mobile)
DOI: 10.6084/m9.figshare.28075163.v1
title: FLIM original image

description: This is the original image that was analyzed in FLIMJ and FLUTE.
DOI: 10.17632/9s9bswrfzd
title: Data for: Cryogenian Aspidella from northwestern Canada

description: Raw presence/absence data of Twitya Aspidella and numerous previously published Ediacaran Aspidella used in cluster analyses. Classical clustering analysis of presence/absence data and nearest neighbor analysis of presence/absence data. These data are summarized in Figure 7 and Table 1 of the primary text.
DOI: 10.6084/m9.figshare.12379922.v1
title: Habitat associations of bats in an agricultural landscape: linear features versus open habitats.

description: Bat activity data along linear features and in the middle of agricultural fields.
DOI: 10.6084/m9.figshare.8798999.v1
title: CESM ocean pCO2 testbed

description: This dataset contains select variables from 25 randomly selected members from the CESM large ensemble (CESM-LENS). Each variable is interpolated from the native grid to a 1x1 degree lat/lon grid. The variables are monthly over the 1982-2017 time frame. Each variable has been sampled as the SOCATv5 data product. RCP8.5 is used after 2005.<br>The intent of this testbed is to evaluate ocean pCO2 gap-filling methods.<br><b> Extracting variables</b><i>&gt;&gt; tar xvzf file.tar.gz</i><br>
DOI: 10.6084/m9.figshare.22766894.v1
title: Annotated Seurat object containing cells for a single-cell transcriptomic atlas of adult female and male African turquoise killifish.

description: The African turquoise killifish (<em>Nothobranchius furzeri</em>), the shortest-lived vertebrate that can be bred in captivity, is an emerging model organism to study vertebrate aging. Here we describe the first multi-tissue, single-cell gene expression atlas of female and male turquoise killifish tissues comprising immune and metabolic cells from the blood, kidney, liver, and spleen. We were able to annotate 22 distinct cell types.
DOI: 10.6084/m9.figshare.23652606.v2
title: Normative Reference Values, Determinants and Regression Equations for the Incremental Shuttle Walk Test (ISWT) in Healthy Asian Population Aged 21 to 80 Years.pdf

description: This is the
DOI: 10.6084/m9.figshare.28385900.v1
title: Figure 1

description: Data to generate Figure 1
DOI: 10.6084/m9.figshare.8148791.v1
title: Storytelling via Virtual Narrator Raw data.xlsx

description: Raw data used to analyze the persuasive effectiveness of storytelling via virtual narrator.The file contain the raw data from two sets of for each survey.<br>
DOI: 10.6084/m9.figshare.14413598.v1
title: Picozoa: initial SAGs

description: genome assemblies and protein predictions for SAGs that were used for Co-assemblies<br>
DOI: 10.6084/m9.figshare.3510447.v1
title: Appendix B. Alternative phylogenetic community structure analysis using a presence/absence null model.

description: Alternative phylogenetic community structure analysis using a presence/absence null model.
DOI: 10.6084/m9.figshare.26994352.v1
title: SmartNote: An LLM-powered, Personalised Release Note Generator That Just Works

description: The release note is a crucial document outlining changes in new software versions. It plays a key role in helping stakeholders recognise important changes and understand the implications behind them. Despite this fact, many developers view the process of writing software release notes as a tedious and dreadful task. Consequently, numerous tools (e.g., DeepRelease and Conventional Changelog) have been developed by researchers and practitioners to automate the generation of software release notes. However, these tools fail to consider project domain and target audience for personalisation, limiting their relevance and conciseness. Additionally, they suffer from limited applicability, often necessitating significant workflow adjustments and adoption efforts, hindering practical use and stressing developers. Despite recent advancements in natural language processing and the proven capabilities of large language models (LLMs) in various code and text-related tasks, there are no existing studies investigating the integration and utilisation of LLMs in automated release note generation. Therefore, we propose SmartNote, a novel and widely applicable release note generation approach that produces high-quality, contextually personalised release notes by leveraging LLM capabilities to aggregate, describe, and summarise changes based on code, commit, and pull request details. It categorises and scores (for significance) commits to generate structured and concise release notes of prioritised changes. We conduct human and automatic evaluations that reveal SmartNote outperforms or achieves comparable performance to DeepRelease (state-of-the-art), Conventional Changelog (off-the-shelf), and the projects' original release note across four quality metrics: completeness, clarity, conciseness, and organisation. In both evaluations, SmartNote ranked first for completeness and organisation, while clarity ranked first in the human evaluation. Furthermore, our controlled study reveals the significance of contextual awareness, while our applicability analysis confirms SmartNote's effectiveness across diverse projects.
DOI: 10.17632/v8tx42gchw
title: Microbiomics data sets in the mouse cecal contents

description: The present study was GV-971 (400 mpk, HG) pretreatment of caerulein and lipopolysaccharide-induced severe acute pancreatitis (SAP) mice and the study was divided into three groups (n = 8/group), control group (CON), model group (SAP), and treatment group (HG+SAP). The data used mouse cecal contents as a sample to detect the intestinal microbiota.
DOI: 10.6084/m9.figshare.20279223.v1
title: PRISM Checklist and flowchart

description: PRISM CHECKLIST and FLOWCHART
DOI: 10.17632/jyyjxws7dr
title: LINF_150006200

description: ATP-dependent RNA helicase | DEAD/H | DRS1
Leishmania infantum (strain JPCM5)
DOI: 10.17866/rd.salford.28035425.v1
title: IoT Research and Innovation Lab - Smart Home System (IRIL-SHS)

description: Smart cities, businesses, workplaces, and even residences have all been converged by the Internet of Things (IoT). The types and characteristics of these devices vary depending on the industry 4.0 and have rapidly increased recently, especially in smart homes. These gadgets can expose users to serious cyber dangers because of a variety of computing constraints and vulnerabilities in the security-by-design concept. The smart home network testbed setup presented in this study is used to evaluate and validate the protection of the smart cyber-physical system. The context-aware threat intelligence and response model identifies the states of the aligned smart devices to distinguish between real-world typical and attack scenarios. It then dynamically writes specific rules for protection against potential cyber threats. The context-aware model is trained on the IoT Research and Innovation Lab - Smart Home System (IRIL-SHS) testbed dataset. The labelled dataset is utilized to create a random forest model, which is subsequently used to train and test the context-aware threat intelligence SHS model's effectiveness and performance. Finally, the model's logic is used to gain rules to be included in Suricata signatures and the firewall rulesets for the response system. Significant values of the measuring parameters were found in the results. The presented model can be used for the real-time security of smart home cyber-physical systems and develops a vision of security challenges for Industry 4.0.
DOI: 10.6084/m9.figshare.14986620.v1
title: Supplementary Material for: Transporters, <b><i>TBC1D4</i></b>, and <b><i>ARID5B</i></b> Variants to Explain Glycated Hemoglobin Variability in Patients with Type 2 Diabetes

description: <b><i>Introduction:</i></b> Genetic variants could aid in predicting antidiabetic drug response by associating them with markers of glucose control, such as glycated hemoglobin (HbA1c). However, pharmacogenetic implementation for antidiabetics is still under development, as the list of actionable markers is being populated and validated. This study explores potential associations between genetic variants and plasma levels of HbA1c in 100 patients under treatment with metformin. <b><i>Methods:</i></b> HbA1c was measured in a clinical chemistry analyzer (Roche), genotyping was performed in an Illumina-GSA array and data were analyzed using PLINK. Association and prediction models were developed using R and a 10-fold cross-validation approach. <b><i>Results:</i></b> We identified genetic variants on <i>SLC47A1, SLC28A1, ABCG2, TBC1D4,</i> and <i>ARID5B</i> that can explain up to 55% of the interindividual variability of HbA1c plasma levels in diabetic patients under treatment. Variants on <i>SLC47A1</i>, <i>SLC28A1</i>, and <i>ABCG2</i> likely impact the pharmacokinetics (PK) of metformin, while the role of the two latter can be related to insulin resistance and regulation of adipogenesis. <b><i>Conclusions:</i></b> Our results confirm previous genetic associations and point to previously unassociated gene variants for metformin PK and glucose control.
DOI: 10.6084/m9.figshare.5129323.v1
title: Supplementary Material for: FP-CIT- and IBZM-SPECT in Corticobasal Syndrome: Results from a Clinical Follow-Up Study

description: <b><i>Objective:</i></b> To evaluate the striatal presynaptic dopamine transporter (FP-CIT-SPECT) and postsynaptic D<sub>2</sub> receptor (IBZM-SPECT) binding in patients with corticobasal syndrome (CBS). <b><i>Background:</i></b> FP-CIT and IBZM are commercially available and approved SPECT tracers for in vivo molecular imaging of pre- and postsynaptic nigrostriatal neuronal degeneration, but only few data for CBS are available. <b><i>Methods:</i></b> 23 patients meeting clinical criteria for early- to mid-stage CBS (disease duration ≤4 years) were examined with SPECT radiotracers FP-CIT and IBZM. All suspected CBS patients underwent a clinical follow-up examination and were re-evaluated after 19.7 ± 15.2 months (mean ± SD). Postmortem diagnosis was available for 2 patients. In patients who met research criteria for probable CBS at the final follow-up visit (n = 19; disease duration: 1.95 ± 0.91 years), SPECT binding values were compared to those of age- and gender-matched Parkinson's disease (PD) patients (n = 18, disease duration: 1.92 ± 0.91 years; clinical follow-up: 32 ± 29.6 months) and neurologically normal control subjects (n = 19). <b><i>Results:</i></b> In comparison to the healthy control subjects, both patient groups showed significant and asymmetric reduction of the striatal presynaptic dopamine transporter binding, but PD patients had significantly lower FP-CIT binding ratios than probable-CBS patients. FP-CIT binding values of probable-CBS patients and healthy controls demonstrated marked overlaps, and in 7 patients (39%) scans revealed no dopaminergic deficit. IBZM uptake did not show significant between-group differences. <b><i>Conclusion:</i></b> Our data indicate that in the early- to mid-stage CBS the degree of nigrostriatal impairment is only mild with a significant proportion of preserved dopamine transporter binding.
DOI: 10.6084/m9.figshare.21829905.v3
title: Datasets for high resolution spatial mapping for SC2Spa

description: <strong>Title</strong><br> Datasets for high resolution spatial mapping for SC2Spa<br> <strong>Author(s)</strong><br> Linbu Liao<br> <strong>Categories</strong><br> Bioinformatic methods development<br> <strong>Item type</strong><br> dataset<br> <strong>Keyword(s)</strong><br> Spatial transcriptomics, Spatial inference <br> AdataMH1.h5ad is the processed mouse hippocampus spatial transcriptomics data file of puck_200115_08 from Slide-seqV2 paper[1]. AMB_HC.h5ad is a processed mouse hippocampus scRNA-seq data file[2]. The datasets are saved in Anndata format. ssHippo_RCTD.csv is the annotation for the AdataMH1.h5ad file by RCTD[3]. AdataMH2.h5ad is the processed mouse hippocampus spatial transcriptomics data file of puck_191204_01 from Slide-seqV2 paper[1]. slideSeq_Puck190926_03_RCTD.csv is the annotation file for AdataEmbryo1.h5ad. AdataEmbryo1.h5ad is preprocessed file of puck_190926_03 (a mouse emrbyo dataset of Slide-seqV2[1]). C2L.zip is the cell2location data used in the analysis of SC2Spa manuscript. The datasets were used for the spatial mapping of SC2Spa. <br> <strong>Repositories</strong> The github website of SC2Spa: https://github.com/linbuliao/SC2Spa The github repository for SC2Spa analysis: https://github.com/linbuliao/SC2Spa_Notebooks <strong>Documentation</strong> The Read the Docs website of SC2Spa: https://sc2spa.readthedocs.io/en/latest/ <br> <strong>References</strong> [1] Stickels RR, Murray E, Kumar P, Li J, Marshall JL, Di Bella DJ, Arlotta P, Macosko EZ, Chen F: <strong>Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2.</strong> <em>Nature Biotechnology</em> 2020. [2] Saunders A, Macosko EZ, Wysoker A, Goldman M, Krienen FM, de Rivera H, Bien E, Baum M, Bortolin L, Wang SY, et al: <strong>Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain.</strong> <em>Cell</em> 2018, <strong>174:</strong>1015-+. [3] Cable DM, Murray E, Zou LS, Goeva A, Macosko EZ, Chen F, Irizarry RA: <strong>Robust decomposition of cell type mixtures in spatial transcriptomics. </strong>Nat Biotechnol 2021. [4] Kleshchevnikov V, Shmatko A, Dann E, Aivazidis A, King HW, Li T, Elmentaite R, Lomakin A, Kedlian V, Gayoso A, et al: <strong>Cell2location maps fine-grained cell types in spatial transcriptomics.</strong> <em>Nat Biotechnol</em> 2022, <strong>40:</strong>661-671. <br>
DOI: 10.6084/m9.figshare.5353183.v1
title: Data, plotting scripts, and figures for "Accelerating finite-rate chemical kinetics with coprocessors: comparing vectorization methods on GPUs, MICs, and CPUs"

description: This bundle of files contains all the data and plotting scripts "Accelerating finite-rate chemical kinetics with coprocessors: comparing vectorization methods on GPUs, MICs, and CPUs", as well as the figures themselves.<br>These results are part of the paper:Christopher P Stone, Andrew T Alferman, and Kyle E. Niemeyer, and Chih-Jen Sung. "Accelerating finite-rate chemical kinetics with coprocessors: comparing vectorization methods on GPUs, MICs, and CPUs," 2017. Under review, available via https://arxiv.org/abs/1608.05794
DOI: 10.17632/vv9g7v56fp
title: Revisiting Endowment Effect in the light of E-WOM

description: Various different aspects of the endowment effect have already been explored. This research focuses on a hitherto unexplored area: the effect of electronic word-of-mouth (e-WOM) on endowment effect. Three experiments are conducted in order to test the effect of positive and negative e-WOM comments on endowment effect by using Amazon.co.uk reviews. The results reveal that positive and negative e-WOM content do not only increase or decrease average buying and selling prices, but also the ratio between them. The experiments showed that where positive comments increase the loss aversion coefficient significantly, the negative comments lead to the disappearance of endowment effect. Obtained results have theoretical and practical implications. Apart of revealing another new condition, under which the endowment effect disappears, the findings regarding e-WOM content have several managerial implications.
DOI: 10.6084/m9.figshare.28509938.v2
title: Average TAC for patients and organs

description: Average TAC values for 9 patients and for lung, kidney, liver and bladder
DOI: 10.6084/m9.figshare.23643135.v1
title: Zhao_etal_GRL_Suport Materials.zip

description: Deterital ziron U-Pb and Hf isotope dada of sandstones for Mesoproterozoic–Late Triassic sedimentary rocks from the North Alxa block, and database for crustal growth and reworking curves of the North Alxa block
DOI: 10.17632/7gdv44njrd
title: Alphabet - Stock Fundamentals

description: This dataset contains financial fundamentals of Alphabet (Google Inc), which includes balance sheets, income statement and cashflow. The data in this dataset only contains 10 years of data. To get full 30+ years of historical fundamental data, check out our website Finnhub.
DOI: 10.6084/m9.figshare.19419104.v1
title: Supplementary Material for: Luciferase-Based Determination of ATP/NAD(H) Pools in a Marine (Environmental) Bacterium

description: In all living organisms, adenosine triphosphate (ATP) and NAD(H) represent universal molecular currencies for energy and redox state, respectively, and are thus widely applicable molecular proxies for an organism’s viability and activity. To this end, corresponding luciferase-based assays in combination with a microplate reader were established with the marine model bacterium <i>Phaeobacter inhibens</i> DSM 17395 (<i>Escherichia coli</i> K12 served as reference). Grey multiwell plates best balanced sensitivity and crosstalk, and optimal incubation times were 5 min and 30 min for the ATP and NAD(H) assay, respectively, together allowing limits of detection of 0.042, 0.470 and 0.710 nM for ATP, NAD<sup>+</sup>, and NADH, respectively. Quenching of bacterial cell samples involved Tris-EDTA-DTAB and bicarbonate base-DTAB for ATP and NAD(H) assays, respectively. The ATP and NAD(H) yields determined for <i>P. inhibens</i> DSM 17395 at ¼ OD<sub>max</sub> were found to reside well within the range previously reported for <i>E. coli</i> and other bacteria, e.g., 3.28 µmol ATP (g cells<sub>dry</sub>)<sup>−1</sup>. Thus, the here described methods for luciferase-based determination of ATP/NAD(H) pools open a promising approach to investigate energy and redox states in marine (environmental) bacteria.
DOI: 10.6084/m9.figshare.28721387.v1
title: PIFR: pose angle-based fall detection.zip

description: The proposed approach extracts nine critical geometric features, including the center of mass and various body angles. These features are used to train a support vector machine (SVM) model for binary classification, distinguishing between standing and lying with high precision.
DOI: 10.6084/m9.figshare.24270466.v1
title: Supplementary Material for: Real-world Data on the Diagnosis, Treatment and Management of Hepatocellular Carcinoma in the Asia-Pacific: The INSIGHT study

description: Introduction: Hepatocellular carcinoma (HCC) is the sixth most commonly diagnosed cancer and the third leading cause of cancer death worldwide. While there has been rapid evolution in the treatment paradigm of HCC across the past decade, the extent to which these newly approved therapies are utilised in clinical practice in the real world is however, unknown. The INSIGHT study was an investigator-initiated, multi-site longitudinal cohort study conducted to reflect real-world epidemiology and clinical practice in Asia-Pacific in the immediate 7-year period after the conclusion of the BRIDGE study. Methods: Data was collected both retrospectively (planned 30% of total cohort size) and prospectively (planned 70%) from January 2013 to December 2019 from eligible patients newly diagnosed with HCC from 33 participating sites across 9 Asia-Pacific countries. Results: A total of 2,533 newly diagnosed HCC patients (1052 in retrospective cohort and 1481 in prospective cohort) were enrolled. The most common risk factor was hepatitis B in all countries except Japan, Australia and New Zealand, where the prevalence of Hepatitis C and diabetes were more common. The top three comorbidities reported in the INSIGHT study include cirrhosis, hypertension and diabetes. We observe high heterogeneity in the first-line treatment recorded across countries and across disease stage, which significantly affects survival outcomes. Stratification by factors such as etiologies, tumor characteristics, presence of extrahepatic metastases or macrovascular invasion and the use of subsequent lines of treatment were performed. Conclusion: The INSIGHT study describes a wide spectrum of clinical management practices in HCC, where patient demographics, differential costs and patient access to therapies may lead to wide geographical variations through the patient’s treatment cycle, from diagnosis to clinical outcome. The high heterogeneity in patient outcomes demonstrates the need for more robust and clinical management strategies to be designed and adopted to bring about better patient outcomes.
DOI: 10.17632/kmzz7dsxyt
title: Lactobacillus paracasei Expressing Porcine Trefoil Factor 3 and Epidermal Growth Factor: A Novel Approach for Superior Mucosal Repair

description: Inflammatory bowel disease significantly impairs patients’ physical health and quality of life, presenting a major challenge in modern healthcare. This chronic condition, characterized by persistent gastrointestinal inflammation, not only affects physiological functions but also imposes considerable psychological and socioeconomic burdens on affected individuals and healthcare systems. The primary objective of this study was to investigate the therapeutic potential of orally administered porcine trefoil factor 3 and epidermal growth factor delivered by Lactobacillus paracasei 27-2 for intestinal mucosal repair. Our experimental results demonstrated that this novel delivery system signifi-cantly enhanced the proliferation and migration capabilities of Immortalized Porcine Enterocyte Cell line J2, suggesting its promising application in promoting intestinal mucosal regeneration and repair. Moreover, the oral administration of the recombinant L. paracasei 27-2 strains could effectively alleviate the symptoms of colitis induced by dextran sulfate sodium in mice and significantly improve the integrity of the intestinal mucosa. In conclusion, using Lactobacillus paracasei 27-2 as an oral delivery vector to ex-press trefoil factor and epidermal growth factor shows great potential as a novel strat-egy for treating inflammatory bowel disease.
DOI: 10.17632/37fwtkp3y3
title: Low and high energy mechanical alloying of Ti-Ni powders

description: Low and high energy mechanical alloying of Ti-Ni powders was carried out to understand the effect of milling energy on phase transformations.