cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3831954
title: Cryo-OrbiSIMS for 3D molecular imaging of a bacterial biofilm in its native state

description: We developed a method for analysis and imaging of biological samples in their native state, by combining a cryo-OrbiSIMS instrument with cryogenic sample handling and high-pressure freezing. By using this method, we did analysis and imaging of frozen-hydrated mature <em>Pseudomonas aeruginosa</em> biofilm, which allows the identification and map of quorum sensing signaling molecules, nucleobases and bacterial membrane molecules with high spatial-resolution and high mass-resolution. Some of quorum sensing signaling molecules were further confirmed by MS/MS. By comparing the analysis of frozen-hydrated <em>Pseudomonas aeruginosa</em> biofilm with the freeze-dried one, we dicover that signal intensity of all interesting molecules get enhanced in the frozen-hydrated state. Especially for polar molecules, such as amino acid, it could even achieve 10,000 fold increasing. Here, we provide the original OrbiSIMS data including MS and MS/MS spectra, depth profile and images of frozen-hydrated and freeze-dried <em>Pseudomonas aeruginosa</em> biofilm. The data could be open by using SurfaceLab Version 7.0 (ION-TOF, Germany).
description: This work has received funding from the MetVBadBugs project of the EMPIR programme co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation programme.
DOI: 10.5281/zenodo.3831955
title: Cryo-OrbiSIMS for 3D molecular imaging of a bacterial biofilm in its native state

description: We developed a method for analysis and imaging of biological samples in their native state, by combining a cryo-OrbiSIMS instrument with cryogenic sample handling and high-pressure freezing. By using this method, we did analysis and imaging of frozen-hydrated mature <em>Pseudomonas aeruginosa</em> biofilm, which allows the identification and map of quorum sensing signaling molecules, nucleobases and bacterial membrane molecules with high spatial-resolution and high mass-resolution. Some of quorum sensing signaling molecules were further confirmed by MS/MS. By comparing the analysis of frozen-hydrated <em>Pseudomonas aeruginosa</em> biofilm with the freeze-dried one, we dicover that signal intensity of all interesting molecules get enhanced in the frozen-hydrated state. Especially for polar molecules, such as amino acid, it could even achieve 10,000 fold increasing. Here, we provide the original OrbiSIMS data including MS and MS/MS spectra, depth profile and images of frozen-hydrated and freeze-dried <em>Pseudomonas aeruginosa</em> biofilm. The data could be open by using SurfaceLab Version 7.0 (ION-TOF, Germany).
description: This work has received funding from the MetVBadBugs project of the EMPIR programme co-financed by the Participating States and from the European Union's Horizon 2020 research and innovation programme.
DOI: 10.15468/m924ha
title: Revisiting the Andean butterfly Eryphanis zolvizora group (Lepidoptera, Nymphalidae): one or several species?

description: This dataset contains the digitized treatments in Plazi based on the original journal article Blandin, Patrick, Bristow, Roger, Neild, Andrew, Sousa, Juan Carlos De, Gareca, Yuvinka, Huertas, Blanca (2014): Revisiting the Andean butterfly Eryphanis zolvizora group (Lepidoptera, Nymphalidae): one or several species? European Journal of Taxonomy 71: 1-66, DOI: http://dx.doi.org/10.5852/ejt.2014.71
DOI: 10.21227/285b-ms48
title: Corona Virus (COVID-19) Turkish Tweets Dataset

description: This data set includes Covid-19 related Tweet messages written in Turkish that contain at least one of four keywords (Covid, Kovid, Corona, Korona). These keywords are used to express Covid-19 virus in Turkey. Tweets collection was started from 11th March 2020, the first Covid-19 case seen in Turkey.
DOI: 10.5281/zenodo.3834821
title: d5-6-assessment-of-impacts-amsterdam

description: Data output from the tool set application for the assessment of the environmental (emissions, carbon footprint, ambient air concentrations), health (exposure and health effects), and economic impacts (e.g. health-related costs).<strong>content_expected</strong><br>file: content_expected.txt<br>Content will follow later.
DOI: 10.5519/qd.j9y75hxo
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (8681 records)
DOI: 10.6073/pasta/71415b286598ef5dcfc0a5eb7da06975
title: American Residential Macrosystems - Bird community data within parks and residential yards in six major metropolitan areas in the United States, 2017-2018

description: "This dataset includes abundance of breeding bird species recorded in residential yards and nearby natural and interstitial areas (i.e.unmanaged vegetation areas in the residential/wildland interface) in six cities across the U.S. Baltimore, MD, Boston, MA, Los Angeles, CA, Miami, FL, Minneapolis-St. Paul, MN, and Phoenix, AZ. Yards were grouped in 4 categories based on fertilizer input frequency, landscaping style and their impact on hydrology: high-input lawns, low-input lawns, wildlife-certified yards and yards with low impact on hydrology (or rain gardens). Bird data was collected via standardized 10-min point counts during the breeding season in 2017 or 2018. "
DOI: 10.5281/zenodo.3833758
title: The boulder population of asteroid 4 Vesta

description: These are data described in the paper "The boulder population of asteroid 4 Vesta: Size-frequency distribution and survival time" by Schröder et al., submitted to Earth & Space Science (Wiley). The data concern boulder counts for craters on the asteroid Vesta. Boulder counts for all 69 craters in Table 1 of the paper are provided as text files with 3 columns: (1) longitude and (2) latitude, both in degrees, and (3) boulder diameter in meters. Generally, boulder identifications are only reliable above 3 image pixels (60 m), but the data files contain all boulders that we (tentatively) identified, including those smaller than 60 m. We also provide figures in PDF format, one for each crater, of the spatial boulder distribution. The figures have the format of Fig. 6 in the paper: Green, small dots represent boulders with a size between 3 and 4 pixels (60 m &lt; d &lt; 80 m). Red, large dots represent boulders larger than 4 pixels (d &gt; 80 m). Boulders smaller than 60 m are not shown.
DOI: 10.5281/zenodo.3833759
title: The boulder population of asteroid 4 Vesta

description: These are data described in the paper "The boulder population of asteroid 4 Vesta: Size-frequency distribution and survival time" by Schröder et al., submitted to Earth & Space Science (Wiley). The data concern boulder counts for craters on the asteroid Vesta. Boulder counts for all 69 craters in Table 1 of the paper are provided as text files with 3 columns: (1) longitude and (2) latitude, both in degrees, and (3) boulder diameter in meters. Generally, boulder identifications are only reliable above 3 image pixels (60 m), but the data files contain all boulders that we (tentatively) identified, including those smaller than 60 m. We also provide figures in PDF format, one for each crater, of the spatial boulder distribution. The figures have the format of Fig. 6 in the paper: Green, small dots represent boulders with a size between 3 and 4 pixels (60 m &lt; d &lt; 80 m). Red, large dots represent boulders larger than 4 pixels (d &gt; 80 m). Boulders smaller than 60 m are not shown.
DOI: 10.5281/zenodo.3833696
title: Mass spectrometry output SILAC labelled (F/Y) biological replicate 1 - anti-HLA-A29 antibody DK1G8

description: Mass spectrometry output from SILAC labelled (F/Y) ERAP2 wildetype versus (CRISPR Cas9-mediated) ERAP2-KO lymphoblastoid cell line from a Birdshot Uveitis patient (ERAP1 hap10/10 ERAP2 hapA/A). Peptides were eluted from immuno-purifications with anti-HLA-A29 antibody DK1G8. The dataset was used for subsequent filtering and differential expression analysis by <em>limma</em>.
DOI: 10.5281/zenodo.3833697
title: Mass spectrometry output SILAC labelled (F/Y) biological replicate 1 - anti-HLA-A29 antibody DK1G8

description: Mass spectrometry output from SILAC labelled (F/Y) ERAP2 wildetype versus (CRISPR Cas9-mediated) ERAP2-KO lymphoblastoid cell line from a Birdshot Uveitis patient (ERAP1 hap10/10 ERAP2 hapA/A). Peptides were eluted from immuno-purifications with anti-HLA-A29 antibody DK1G8. The dataset was used for subsequent filtering and differential expression analysis by <em>limma</em>.
DOI: 10.15468/a4ayjj
title: An inquiline deep-water bryozoan / amphipod association from New Zealand, including the description of a new genus and species of Chevaliidae

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lörz, Anne-Nina, Myers, Alan, Gordon, Dennis (2014): An inquiline deep-water bryozoan / amphipod association from New Zealand, including the description of a new genus and species of Chevaliidae. European Journal of Taxonomy 72: 1-17, DOI: http://dx.doi.org/10.5852/ejt.2014.72
DOI: 10.5281/zenodo.3834160
title: Does ring current heating generate the observed O+ shell?: Numerical information for the figures

description: This archive contains data files needed to reproduce selected figures from the following manuscript: Does ring current heating generate the observed O+ shell?<br> by J. Krall, J. D. Huba, and M.-C. Fok This manuscript was submitted to Geophyscial Research Letters in April, 2020 In addition, this archive contains CIMI code output giving Coulomb heating losses from the ring current<br> and a SAMI3 subroutine that describes the heating function used to mimic ring current heating.
DOI: 10.5281/zenodo.3834161
title: Does ring current heating generate the observed O+ shell?: Numerical information for the figures

description: This archive contains data files needed to reproduce selected figures from the following manuscript: Does ring current heating generate the observed O+ shell?<br> by J. Krall, J. D. Huba, and M.-C. Fok This manuscript was submitted to Geophyscial Research Letters in April, 2020 In addition, this archive contains CIMI code output giving Coulomb heating losses from the ring current<br> and a SAMI3 subroutine that describes the heating function used to mimic ring current heating.
DOI: 10.15468/5snjtq
title: New Baltic amber leafhoppers representing the oldest Aphrodinae and Megophthalminae (Hemiptera, Cicadellidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dietrich, Christopher H., Gonçalves, Ana Clara (2014): New Baltic amber leafhoppers representing the oldest Aphrodinae and Megophthalminae (Hemiptera, Cicadellidae). European Journal of Taxonomy 74: 1-13, DOI: http://dx.doi.org/10.5852/ejt.2014.74
DOI: 10.15468/zayg23
title: A taxonomic review of the genus Asterostegus (Echinodermata: Ophiuroidea), with the description of a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Okanishi, Masanori, Fujita, Toshihiko (2014): A taxonomic review of the genus Asterostegus (Echinodermata: Ophiuroidea), with the description of a new species. European Journal of Taxonomy 76: 1-18, DOI: http://dx.doi.org/10.5852/ejt.2014.76
DOI: 10.25919/5ec48dbb1a4c5
title: Parkes observations for project P1038 semester 2020APRS_03

description: PSR~J1759-2402 is one of a small handful of pulsars which are in orbit about high mass stars. Its orbital period is 8.2 years and the orbit is highly eccentric with periastron expected in 2021 January. Although discovered at Parkes, the Lovell telescope has been monitoring the pulsar over many years. However, it's restricted bandwidth and lack of polarization capability make it unsuitable to follow the pulsar as it enters and leaves the eclipse by the companion. In contrast, the UWL on Parkes with its wide-band and excellent polarization characteristics means that we can determine scattering, polarization, dispersion measure and rotation measure changes as the pulsar enters its companion wind. We request weekly observations of the pulsar to track its progress around the orbit.
DOI: 10.5281/zenodo.3833777
title: Mass spectrometry output SILAC labelled (F/Y) biological replicate 1 - anti-HLA-ABC antibody W6/32

description: Mass spectrometry output from SILAC labelled (F/Y) ERAP2 WT versus (CRISPR Cas9-mediated) ERAP2-KO lymphoblastoid cell line from a Birdshot Uveitis patient (ERAP1 hap10/10 ERAP2 hapA/A). Peptides were eluted from immuno-purifications from HLA-A29-negative (DK1G8-negatively selected) fractions with anti-HLA-ABC antibody W6/32. The dataset was used for subsequent filtering and differential expression analysis by <em>limma</em>.
DOI: 10.5281/zenodo.3833778
title: Mass spectrometry output SILAC labelled (F/Y) biological replicate 1 - anti-HLA-ABC antibody W6/32

description: Mass spectrometry output from SILAC labelled (F/Y) ERAP2 WT versus (CRISPR Cas9-mediated) ERAP2-KO lymphoblastoid cell line from a Birdshot Uveitis patient (ERAP1 hap10/10 ERAP2 hapA/A). Peptides were eluted from immuno-purifications from HLA-A29-negative (DK1G8-negatively selected) fractions with anti-HLA-ABC antibody W6/32. The dataset was used for subsequent filtering and differential expression analysis by <em>limma</em>.
DOI: 10.5281/zenodo.3834028
title: Staphylococcus aureus VCF files: Risk Factors for Recurrent Staphylococcus aureus Bacteremia

description: Background: To understand the clinical, bacterial, and host characteristics associated with recurrent Staphylococcus aureus bacteremia (R-SAB), patients with R-SAB were compared to contemporaneous patients with a single episode of SAB (S-SAB).<br> Methods: All SAB isolates underwent spa genotyping. All isolates from R-SAB patients underwent Pulsed-Field Gel Electrophoresis (PFGE). PFGE-indistinguishable pairs from 40 patients underwent whole genome sequencing (WGS). Acute phase plasma from R-SAB and S-SAB patients was matched 1:1 for age, race, gender, and bacterial genotype and underwent cytokine quantification using 25-analyte multiplex bead array. Results: R-SAB occurred in 69 (9.1%) of the 756 study patients. Of the 69 patients, 30 experienced relapse (43.5%) and 39 reinfection (56.5%). Age, race, hemodialysis dependence, presence of foreign body, MRSA, and persistent bacteremia were individually associated with likelihood of recurrence. Multivariate risk modeling revealed that African American (AA) hemodialysis patients were nearly two times more likely (OR = 9.652 [5.402 – 17.418]) than White hemodialysis patients (OR = 4.53 [1.696 – 10.879]) to experience R-SAB. WGS confirmed PFGE interpretations in all cases. Median RANTES levels in acute phase plasma from the initial episode of SAB were higher in R-SAB than in matched S-SAB controls ( P = 0.0053, False Discovery Rate &lt; 0.10). <br> Conclusion: This study identified several risk factors for R-SAB. The largest risk for R-SAB is among AA hemodialysis patients. Higher RANTES levels in R-SAB compared to<br> matched controls warrants further study.
description: VCF files generated from WGS that differentiate between reference, alternate and non-callable loci. SRA BioProject PRJNA626380
DOI: 10.5281/zenodo.3834029
title: Staphylococcus aureus VCF files: Risk Factors for Recurrent Staphylococcus aureus Bacteremia

description: Background: To understand the clinical, bacterial, and host characteristics associated with recurrent Staphylococcus aureus bacteremia (R-SAB), patients with R-SAB were compared to contemporaneous patients with a single episode of SAB (S-SAB).<br> Methods: All SAB isolates underwent spa genotyping. All isolates from R-SAB patients underwent Pulsed-Field Gel Electrophoresis (PFGE). PFGE-indistinguishable pairs from 40 patients underwent whole genome sequencing (WGS). Acute phase plasma from R-SAB and S-SAB patients was matched 1:1 for age, race, gender, and bacterial genotype and underwent cytokine quantification using 25-analyte multiplex bead array. Results: R-SAB occurred in 69 (9.1%) of the 756 study patients. Of the 69 patients, 30 experienced relapse (43.5%) and 39 reinfection (56.5%). Age, race, hemodialysis dependence, presence of foreign body, MRSA, and persistent bacteremia were individually associated with likelihood of recurrence. Multivariate risk modeling revealed that African American (AA) hemodialysis patients were nearly two times more likely (OR = 9.652 [5.402 – 17.418]) than White hemodialysis patients (OR = 4.53 [1.696 – 10.879]) to experience R-SAB. WGS confirmed PFGE interpretations in all cases. Median RANTES levels in acute phase plasma from the initial episode of SAB were higher in R-SAB than in matched S-SAB controls ( P = 0.0053, False Discovery Rate &lt; 0.10). <br> Conclusion: This study identified several risk factors for R-SAB. The largest risk for R-SAB is among AA hemodialysis patients. Higher RANTES levels in R-SAB compared to<br> matched controls warrants further study.
description: VCF files generated from WGS that differentiate between reference, alternate and non-callable loci. SRA BioProject PRJNA626380
DOI: 10.15468/7hvtt4
title: A new species of H. Adams & A. Adams, 1853 (Gastropoda, Cassidae) from the Philippines identified by molecular data

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fedosov, Alexander, Olivera, Baldomero M., Watkins, Maren, Barkalova, Varvara (2014): A new species of H. Adams & A. Adams, 1853 (Gastropoda, Cassidae) from the Philippines identified by molecular data. European Journal of Taxonomy 78: 1-13, DOI: http://dx.doi.org/10.5852/ejt.2014.78
DOI: 10.5066/p9da4fzc
title: Multi-Agency Gage Height and Discharge Datasets for Selected Streamgages on the Missouri River from 10/01/1936 to 12/31/2018

description: This dataset includes data for 12 selected streamgages on the Missouri River from 10/01/1936 through 12/31/2018. The data include time series of gage height at the following U.S. Geological Survey (USGS) streamgages: 06601200 Missouri River at Decatur, Nebraska 06609100 Missouri River at Blair, Nebraska 06805600 Missouri River at Plattsmouth, Nebraska 06810070 Missouri River at Brownville, Nebraska 06815990 Missouri River at Oregon, Missouri Time series of gage height and discharge and rating tables are provided for the following USGS streamgages: 06486000 Missouri River at Sioux City, Iowa 06610000 Missouri River at Omaha, Nebraska 06807000 Missouri River at Nebraska City, Nebraska 06813500 Missouri River at Rulo, Nebraska 06818000 Missouri River at St. Joseph, Missouri 06893000 Missouri River at Kansas City, Missouri Time series of discharge is provided for the USGS streamgage: 06467500 Missouri River at Yankton, South Dakota U.S. Army Corps of Engineers (USACE), and National Weather Service (NWS) data were considered when compiling as complete a time-series as possible for each streamgage. Data sources from these agencies included digital database output as well as paper records and consist of both daily mean values and single daily observation data.
DOI: 10.5282/ubm/data.189
title: Resilience to climate change in an octocoral involves the transcriptional decoupling of the calcification and stress response toolkits

description: Up to one-third of all described marine species occur in coral reefs, but the future of these hyperdiverse ecosystems is insecure due to local and global threads, such as overfishing, eutrophication, ocean warming and acidification. Although these impacts are expected to have a net detrimental effect on reefs, some organisms, like soft corals, may remain unaffected or benefit from anthropogenically induced environmental change, replacing stony corals in future reefs. Here, we show that the response to simulated climate change of the skeletogenic and stress-response toolkits of a common Indo-Pacific gorgonian is decoupled. This transcriptional decoupling provides a mechanistic explanation for the resilience to anthropogenically-driven environmental change observed in soft corals.
DOI: 10.15468/sw6wva
title: Four Achnanthidium species (Bacillariophyta) formerly identified as Achnanthidium minutissimum from the Antarctic Region

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vijver, Bart Van De, Kopalová, Kateřina (2014): Four Achnanthidium species (Bacillariophyta) formerly identified as Achnanthidium minutissimum from the Antarctic Region. European Journal of Taxonomy 79: 1-19, DOI: http://dx.doi.org/10.5852/ejt.2014.79
DOI: 10.15468/yjd8uh
title: A new genus of spider beetle (Coleoptera, Ptinidae) from western Peru

description: This dataset contains the digitized treatments in Plazi based on the original journal article Philips, T. Keith, Whorrall, Kyle A., Gearner, Olivia M., Huchet, Jean-Bernard (2020): A new genus of spider beetle (Coleoptera, Ptinidae) from western Peru. ZooKeys 934: 81-91, DOI: http://dx.doi.org/10.3897/zookeys.934.38670, URL: http://dx.doi.org/10.3897/zookeys.934.38670
DOI: 10.5281/zenodo.3833783
title: Mass spectrometry output SILAC labelled (F/Y) biological replicate 2 - anti-HLA-A29 antibody DK1G8

description: Mass spectrometry output from SILAC labelled (F/Y) ERAP2 WT versus (CRISPR Cas9-mediated) ERAP2-KO lymphoblastoid cell line from a Birdshot Uveitis patient (ERAP1 hap10/10 ERAP2 hapA/A). Peptides were eluted from immuno-purifications with anti-HLA-A29 antibody DK1G8. The dataset was used for subsequent filtering and differential expression analysis by <em>limma</em>.
DOI: 10.5281/zenodo.3833784
title: Mass spectrometry output SILAC labelled (F/Y) biological replicate 2 - anti-HLA-A29 antibody DK1G8

description: Mass spectrometry output from SILAC labelled (F/Y) ERAP2 WT versus (CRISPR Cas9-mediated) ERAP2-KO lymphoblastoid cell line from a Birdshot Uveitis patient (ERAP1 hap10/10 ERAP2 hapA/A). Peptides were eluted from immuno-purifications with anti-HLA-A29 antibody DK1G8. The dataset was used for subsequent filtering and differential expression analysis by <em>limma</em>.
DOI: 10.25919/5ec49015336fa
title: Parkes observations for project P958 semester 2020APRS_07

description: Fast radio bursts (FRBs) continue to raise more questions than they answer. Until last year, only one burst – the only one known to repeat - had been localized to a bright radio nebula (either a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy. Over the last three years searches with the Australian Square Kilometre Array Pathfinder (ASKAP) have detected 35 bursts, eight of which have been localised to host galaxies at redshifts ranging from 0.1 to 0.5. These bursts and their hosts are very unlike the repeater, suggesting there may be a dichotomy in the population. However one of the arcminute-localised ASKAP FRBs has recently been found to repeat. Here we propose to search and study repetitions in this FRB population. Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections to characterise the fraction of bursts that repeat. For bursts that repeat the unique wide bandwidth observations will be used to test leading models of burst emission.
DOI: 10.14457/mu.res.2010.112
title: Identification and characterization of ethylene regulated genes in relation with latex yield of rubber tree (Hevea brasiliensis)
DOI: 10.15468/jfwnns
title: Three new species of the subgenus Otocepheus (Acrotocepheus) (Acari, Oribatida, Otocepheidae) from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zheng, Li-Hao, Chen, Jun (2020): Three new species of the subgenus Otocepheus (Acrotocepheus) (Acari, Oribatida, Otocepheidae) from China. ZooKeys 934: 1-23, DOI: http://dx.doi.org/10.3897/zookeys.934.49862, URL: http://dx.doi.org/10.3897/zookeys.934.49862