cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.syngty
title: Occurrence Download

description: A dataset listing the 8 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation)",
 "Geometry POLYGON((-9.82791 36.80122,-9.33654 35.80099,-8.27623 35.17908,-4.83055 33.53128,-2.42447 33.23561,2.52956 32.53243,7.32923 31.6734,11.08336 30.64197,13.96687 29.84081,17.21916 29.52476,20.6394 29.80262,25.43224 29.95886,31.02219 29.47862,34.05019 30.03936,37.06271 31.38467,37.66061 34.71067,37.15447 37.28773,34.0036 37.80882,31.90338 38.68561,28.89262 39.86904,23.91272 40.71882,22.34265 42.46221,18.95542 44.65759,16.91637 45.90141,16.91637 45.90141,11.67866 46.42521,7.87702 45.41363,4.79804 44.56742,1.10298 44.33945,-1.50701 44.19672,-4.28012 43.94184,-7.50339 44.51905,-9.75655 44.25397,-10.12358 41.97023,-10.09299 40.16567,-9.82791 36.80122))",
 "TaxonKey is Symphyla"
 ]
}

 The dataset's 8 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076973-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6e8jxj
title: Occurrence Download

description: A dataset containing 1000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stichopus horrens Selenka, 1867",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 1000 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077146-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qyysyg
title: Occurrence Download

description: A dataset containing 2887 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boscia senegalensis Lam."
 ]
}

 The dataset includes 2887 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209258-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dslqe9
title: Occurrence Download

description: A dataset listing the 1304109335 species recorded in GBIF matching the query:
{ }

 The dataset's 1304109335 records were derived from 24056 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022907-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13834630
title: Tabla de análisis cualitativo de los datos obtenidos por los docentes del Grado en Maestro de Educación Primaria

description: Tabla de análisis cualitativo de los datos obtenidos por los docentes del Grado en Maestro de Educación Primaria

Anexo perteneciente a la Tesis Doctoral: Diseño Universal para el Aprendizaje (DUA) en la formación inicial de Maestros y Maestras de Educación Primaria
DOI: 10.15468/dl.u8fb9x
title: Occurrence Download

description: A dataset containing 17220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-72.65745 42.56826,-71.1145 42.56826,-71.1145 43.33768,-72.65745 43.33768,-72.65745 42.56826))",
 "OccurrenceStatus is Present",
 "TaxonKey is Buteo platypterus (Vieillot, 1823)"
 ]
}

 The dataset includes 17220 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028588-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec4zfn
title: Occurrence Download

description: A dataset containing 6912 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-141.43539 -47.66295,-10.56461 -47.66295,-10.56461 4.66295,-141.43539 4.66295,-141.43539 -47.66295))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pelecanoides garnotii (Lesson, 1828)"
 ]
}

 The dataset includes 6912 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028590-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sq7mps
title: Occurrence Download

description: A dataset containing 62495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-5.49169 37.80734,-6.73361 37.07328,-6.31964 35.96433,-5.10531 35.94199,-4.36016 36.99617,-5.49169 37.80734))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 62495 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028589-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzzxug
title: Occurrence Download

description: A dataset containing 337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Geomys bursarius missouriensis McLaughlin, 1958"
 ]
}

 The dataset includes 337 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028592-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24915870
title: Traits estimated when grown alone may underestimate the competitive advantage and invasiveness of exotic species

description: This repository contains all the compiled data and code from the work "Traits estimated when grown alone may underestimate competitive advantage and invasiveness of exotic species" .
DOI: 10.15468/dl.nwvsc9
title: Occurrence Download

description: A dataset containing 10061 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-48.47313 -24.48892,-37.28346 -24.48892,-37.28346 -5.3263,-48.47313 -5.3263,-48.47313 -24.48892))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Formicidae",
 "Year 1970-2024"
 ]
}

 The dataset includes 10061 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028593-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3dddx
title: Occurrence Download

description: A dataset containing 105504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "Geometry POLYGON((-32.56996 35.55983,-22.66909 35.55983,-22.66909 41.58858,-32.56996 41.58858,-32.56996 35.55983))",
 "OccurrenceStatus is Present",
 "Year 2023-2024"
 ]
}

 The dataset includes 105504 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028559-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc9bk27
title: CCDC 278258: Experimental Crystal Structure Determination

description: Related Article: R.Winpenny, G.Timco, S.Parsons, D.Messenger|2005|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.3ncp6x
title: Occurrence Download

description: A dataset containing 284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Hawk Migration Association of North America - HawkCount",
 "Geometry POLYGON((-72.65745 42.56826,-71.1145 42.56826,-71.1145 43.33768,-72.65745 43.33768,-72.65745 42.56826))",
 "OccurrenceStatus is Present",
 "TaxonKey is Buteo platypterus (Vieillot, 1823)"
 ]
}

 The dataset includes 284 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028595-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k29yfs
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Evaluación del estado poblacional del Mono Churuco en el Parque Amacayacu, periodo 2012 a 2017"
 ]
}

 The dataset includes 39 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028596-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5qdfc
title: Occurrence Download

description: A dataset containing 66208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "TaxonKey is Procyon lotor (Linnaeus, 1758)"
 ]
}

 The dataset includes 66208 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028594-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwnyhk
title: Occurrence Download

description: A dataset containing 9190 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Digitonthophagus gazella (Fabricius, 1787)"
 ]
}

 The dataset includes 9190 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028597-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.not0ev4a
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (97 records)
DOI: 10.15468/dl.u3692a
title: Occurrence Download

description: A dataset containing 11202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "TaxonKey is Lontra canadensis (Schreber, 1777)"
 ]
}

 The dataset includes 11202 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028599-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13453629
title: Trapped in Transformative Agreements?  A Multifaceted Analysis of >1,000 Contracts

description: Transformative agreements between academic publishers and research institutions are ubiquitous. The ESAC Initiative lists more than 1,000 contracts in its database. We make use of this unique dataset by web-scraping the details of every contract to substantially expand the overview dataset provided by the Efficiency and Standards for Article Charges (ESAC) initiative. Based on that, we combine qualitative and quantitative methods to conduct an in-depth analysis of the contract characteristics and the TA landscape. Our analysis demonstrates that research institutions seem to be `trapped' in transformative agreements. Instead of being a bridge towards a fully Open Access world, academia is stuck in the hybrid system. This endows the legacy (non-Open Access) publishing houses with substantial market power. It raises entry barriers, lowers competition, and increases costs for libraries and universities.

This Replication Package collects all data and code files to reexecute the analysis presented in the corresponding paper. Please first read the "ReadMe" file that guides the curious reader through the replication steps.
DOI: 10.5281/zenodo.13453630
title: Trapped in Transformative Agreements?  A Multifaceted Analysis of >1,000 Contracts

description: Transformative agreements between academic publishers and research institutions are ubiquitous. The ESAC Initiative lists more than 1,000 contracts in its database. We make use of this unique dataset by web-scraping the details of every contract to substantially expand the overview dataset provided by the Efficiency and Standards for Article Charges (ESAC) initiative. Based on that, we combine qualitative and quantitative methods to conduct an in-depth analysis of the contract characteristics and the TA landscape. Our analysis demonstrates that research institutions seem to be `trapped' in transformative agreements. Instead of being a bridge towards a fully Open Access world, academia is stuck in the hybrid system. This endows the legacy (non-Open Access) publishing houses with substantial market power. It raises entry barriers, lowers competition, and increases costs for libraries and universities.

This Replication Package collects all data and code files to reexecute the analysis presented in the corresponding paper. Please first read the "ReadMe" file that guides the curious reader through the replication steps.
DOI: 10.5281/zenodo.13834401
title: Trapped in Transformative Agreements?  A Multifaceted Analysis of >1,000 Contracts

description: Transformative agreements between academic publishers and research institutions are ubiquitous. The ESAC Initiative lists more than 1,000 contracts in its database. We make use of this unique dataset by web-scraping the details of every contract to substantially expand the overview dataset provided by the Efficiency and Standards for Article Charges (ESAC) initiative. Based on that, we combine qualitative and quantitative methods to conduct an in-depth analysis of the contract characteristics and the TA landscape. Our analysis demonstrates that research institutions seem to be `trapped' in transformative agreements. Instead of being a bridge towards a fully Open Access world, academia is stuck in the hybrid system. This endows the legacy (non-Open Access) publishing houses with substantial market power. It raises entry barriers, lowers competition, and increases costs for libraries and universities.

This Replication Package collects all data and code files to reexecute the analysis presented in the corresponding paper. Please first read the "ReadMe" file that guides the curious reader through the replication steps.
DOI: 10.15468/dl.tubk9w
title: Occurrence Download

description: A dataset containing 828 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chiranthodendron pentadactylon Larreat."
 ]
}

 The dataset includes 828 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028600-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.du4vkq
title: Occurrence Download

description: A dataset containing 100390 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "Geometry POLYGON((-32.56996 35.55983,-22.66909 35.55983,-22.66909 41.58858,-32.56996 41.58858,-32.56996 35.55983))",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate precision invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Recorded date mismatch, Recorded date invalid, Recorded date unlikely, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Elevation non numeric, Modified date invalid, Modified date unlikely, Identified date unlikely, Identified date invalid, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, Occurrence status inferred from individual count, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "Year 2023-2024"
 ]
}

 The dataset includes 100390 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028584-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmcs4k
title: Occurrence Download

description: A dataset containing 1202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ichthyosaura alpestris (Laurenti, 1768)"
 ]
}

 The dataset includes 1202 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028604-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26781322
title: Data

description: Octodon degus CT scan files
DOI: 10.6084/m9.figshare.26781322.v1
title: Data

description: Octodon degus CT scan files
DOI: 10.15468/dl.25dp2e
title: Occurrence Download

description: A dataset containing 468 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Saguinus leucopus (Günther, 1877)",
 "Year 2020-2024"
 ]
}

 The dataset includes 468 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028606-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13834473
title: yeast_unmod_processed

description: Reference:

 



Nagaraj, N.; Kulak, N. A.; Cox, J.; Neuhauser, N.; Mayr, K.; Hoerning, O.; Vorm, O.; Mann, M.

System-Wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-Shot Ultra HPLC Runs on a Bench Top Orbitrap. Mol. Cell. Proteomics 2012, 11 (3), M111.013722 DOI: [10.1074/mcp.M111.013722](https://doi.org/10.1074/mcp.M111.013722)

 





All datasets were implemented and curated from:

 







Ma, C.; Ren, Y.; Yang, J.; Ren, Z.; Yang, H.; Liu, S.

Improved Peptide Retention Time Prediction in Liquid Chromatography through Deep Learning. Anal. Chem. 2018, 90 (18), 10881–10888. DOI: [10.1021/acs.analchem.8b02386](https://doi.org/10.1021/acs.analchem.8b02386)
DOI: 10.5281/zenodo.13834474
title: yeast_unmod_processed

description: Reference:

 



Nagaraj, N.; Kulak, N. A.; Cox, J.; Neuhauser, N.; Mayr, K.; Hoerning, O.; Vorm, O.; Mann, M.

System-Wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-Shot Ultra HPLC Runs on a Bench Top Orbitrap. Mol. Cell. Proteomics 2012, 11 (3), M111.013722 DOI: [10.1074/mcp.M111.013722](https://doi.org/10.1074/mcp.M111.013722)

 





All datasets were implemented and curated from:

 







Ma, C.; Ren, Y.; Yang, J.; Ren, Z.; Yang, H.; Liu, S.

Improved Peptide Retention Time Prediction in Liquid Chromatography through Deep Learning. Anal. Chem. 2018, 90 (18), 10881–10888. DOI: [10.1021/acs.analchem.8b02386](https://doi.org/10.1021/acs.analchem.8b02386)
DOI: 10.15468/dl.74yn6j
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Monteverdia ilicifolia (Mart. ex Reissek) Biral",
 "Year 2016-2024"
 ]
}

 The dataset's 3 records were derived from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028591-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13834519
title: xbridge_amide_processed

description: Reference:

 







Spicer, V.; Krokhin, O. V.

Peptide Retention Time Prediction in Hydrophilic Interaction Liquid Chromatography. Comparison of Separation Selectivity between Bare Silica and Bonded Stationary Phases. J. Chromatogr. A 2018, 1534, 75–84, DOI: [10.1016/j.chroma.2017.12.046](https://doi.org/10.1016/j.chroma.2017.12.046)



 





All datasets were implemented and curated from:

 







Ma, C.; Ren, Y.; Yang, J.; Ren, Z.; Yang, H.; Liu, S.

Improved Peptide Retention Time Prediction in Liquid Chromatography through Deep Learning. Anal. Chem. 2018, 90 (18), 10881–10888. DOI: [10.1021/acs.analchem.8b02386](https://doi.org/10.1021/acs.analchem.8b02386)
DOI: 10.5281/zenodo.13834520
title: xbridge_amide_processed

description: Reference:

 







Spicer, V.; Krokhin, O. V.

Peptide Retention Time Prediction in Hydrophilic Interaction Liquid Chromatography. Comparison of Separation Selectivity between Bare Silica and Bonded Stationary Phases. J. Chromatogr. A 2018, 1534, 75–84, DOI: [10.1016/j.chroma.2017.12.046](https://doi.org/10.1016/j.chroma.2017.12.046)



 





All datasets were implemented and curated from:

 







Ma, C.; Ren, Y.; Yang, J.; Ren, Z.; Yang, H.; Liu, S.

Improved Peptide Retention Time Prediction in Liquid Chromatography through Deep Learning. Anal. Chem. 2018, 90 (18), 10881–10888. DOI: [10.1021/acs.analchem.8b02386](https://doi.org/10.1021/acs.analchem.8b02386)
DOI: 10.15468/dl.gwgwex
title: Occurrence Download

description: A dataset containing 1632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "TaxonKey is Ursus arctos horribilis Ord, 1815"
 ]
}

 The dataset includes 1632 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028607-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.