cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.y2bg3j
title: Occurrence Download

description: A dataset containing 2009 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lycaon pictus (Temminck, 1820)"
 ]
}

 The dataset includes 2009 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002412-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5285/4f0fc5ca-caaa-4c5e-88e5-9460c0324826
title: Aerial survey of the Blue Whale Harbour, South Georgia, fur seal colony during the 2021/22 season, flight number DPLUS_109_10

description: Aerial survey of the Blue Whale Harbour fur seal colony during the 2021/22 season conducted using a RPAS (remotely piloted aerial system).
The aerial survey was conducted as part of the Darwin Plus (DPLUS) 109 project: Initiating Monitoring Support for the SGSSI-MPA Research and Monitoring Plan for the purpose of establishing a baseline population estimate of key indicator species around South Georgia.
Dataset includes the original images and log files, the original RINEX GNSS (global navigation satellite system) base station files, the post-processed GNSS and imagery data.
This dataset is from flight number DPLUS_109_10 and was carried out on 06/12/2021.
This work was supported by the Overseas Territories Environment and Climate Fund under Grant Darwin Plus ref: DPLUS109: Initiating monitoring support for the SGSSI-MPA Research and Monitoring Plan. Funding for this work was also received from the UK Blue Belt fund through GSGSSI.
description: Data collection:
Aerial survey conducted using a RPAS (AgEagle eBee X). The survey consisted of collecting overlapping imagery of the target area, with a minimum forward overlap of 80% and a side overlap of 60%. The altitude during acquisition was species specific, determined by the required ground sampling distance (GSD), but was generally between 80 m and 120 m AGL (above ground level). During the aerial surveys a geodetic Trimble GNSS base station receiver collected data.

Post flight processing:
Precise point positioning (PPP) was undertaken using the online Canadian Spatial Reference System PPP tool to generate the position of the base station during the survey. The PPP solution generated was then used to process the eBee X's onboard GNSS receiver using post-processed kinematic (PPK) processing within eMotion to improve the accuracy of the camera centres captured during flight. Once complete, the coordinates for each image was then updated in the EXIF data and reexported from eMotion as .jpg's.

Please refer to Fenney et al. for further information on the data collection and post processing methodologies.
description: Data collection equipment:

UAV:
Manufacturer: AgEagle
Model: eBee X
Sensor: AgEagle Aeria X (RBG camera)
Flight management software: eMotion (version 3.20.0 and version 3.22.0)

GNSS base station:
Manufacturer: Trimble
Receiver model: R9s
Antenna model: Zyphr Model 2

Post-flight processing software:

Canadian Spatial Reference System Precise Point Positioning (CSRS-PPP, Version 3)
eMotion (version 3.20.0 and version 3.22.0)

Photogrammetry software:
Agisoft Metashape (version 1.8.4 build 14671) or Pix4D (version 4.7.5.).
description: Please refer to Fenney et al. for further information on the data collection and post processing methodologies.

PPP processing accuracy is reported in the CSRS PPP processing report (.pdf).

PPK processing accuracy (by image) is reported in the eMotion camera centre geoinfo file (.txt).

Data resolution
Target GSD of aerial survey (2.0 cm).
DOI: 10.5281/zenodo.13884304
title: Wisdom of Crowds for Supporting the Safety Evaluation of Nanomaterials - Data and results

description: This repository contains the input data and the generated results utilized as part of the research article titled "Wisdom of Crowds for Supporting the Safety Evaluation of Nanomaterials"  by Saarimäki & Fratello et al.

Data

This dataset includes anonymized responses of a panel of experts to a questionnaire focused on nanomaterials safety.

Additional Data Sources

This entry further includes additional data from the following sources:



Saarimäki et al. (2021): Preprocessed data and primary physicochemical characteristics are available on Zenodo.

Gallud et al. (2020): Data is available from the NCBI Gene Expression Omnibus (GEO) under accession number GSE148705.

del Giudice et al. (2023): The advanced descriptors are accessible through the associated Zenodo repository.

Labouta et al. (2019): The harmonized dataset of ENMs cell viability assays is available as supporting information of the reasearch article.


Outputs



Statistical modeling: The inferred parameters of the statistical model developed to analyze the expert responses and identify the consensus among the experts.

Machine Learning classifiers: The performances of several machine learning classifiers trained on the consensus responses to learn models that can predict safety concerns of new nanomaterials based on transcriptomics and physicochemical descriptors data.

Feature Importance: The relevant features extracted from the models analyzed to understand which aspects of the molecular responses to ENMs and which physicochemical properties are most important in driving the predictions.


Contents

data/Combined_cleaned_responses_anon.xlsx: Contains the anonymized responses from the expert panel.

data/enms_grouping.txt: Contains a categorization of the ENMs based on their core material.

data/expert_bibliographies_anon.pickle: Contains the anonymized bibliography of the experts to assess the multidisciplinarity of the panel assembled.

data/gex.csc.gz: Contains the gene expression after exposure to the ENMs.

data/phenodata.txt: Contains the meta-data of the experiments

data/physicochemical_descriptors.txt: Contains the physicochemical descriptors of the ENMs.

data/external/nn8b07562_si_001.xlsx: Contains a panel of harmonized ENMs cytotoxicity assays.

outputs/concern_scores.csv: Contains the consensus scores inferred by the statistical model.

outputs/cross_validation/: Contains the logs and performances of all the machine learning classification runs .

outputs/important_{genes,physchem}_weighted.xlsx: Feature relevance scores of both views.

outputs/model_inference_anon.nc: Inferred parameters of the statistical model.
DOI: 10.5281/zenodo.13884305
title: Wisdom of Crowds for Supporting the Safety Evaluation of Nanomaterials - Data and results

description: This repository contains the input data and the generated results utilized as part of the research article titled "Wisdom of Crowds for Supporting the Safety Evaluation of Nanomaterials"  by Saarimäki & Fratello et al.

Data

This dataset includes anonymized responses of a panel of experts to a questionnaire focused on nanomaterials safety.

Additional Data Sources

This entry further includes additional data from the following sources:



Saarimäki et al. (2021): Preprocessed data and primary physicochemical characteristics are available on Zenodo.

Gallud et al. (2020): Data is available from the NCBI Gene Expression Omnibus (GEO) under accession number GSE148705.

del Giudice et al. (2023): The advanced descriptors are accessible through the associated Zenodo repository.

Labouta et al. (2019): The harmonized dataset of ENMs cell viability assays is available as supporting information of the reasearch article.


Outputs



Statistical modeling: The inferred parameters of the statistical model developed to analyze the expert responses and identify the consensus among the experts.

Machine Learning classifiers: The performances of several machine learning classifiers trained on the consensus responses to learn models that can predict safety concerns of new nanomaterials based on transcriptomics and physicochemical descriptors data.

Feature Importance: The relevant features extracted from the models analyzed to understand which aspects of the molecular responses to ENMs and which physicochemical properties are most important in driving the predictions.


Contents

data/Combined_cleaned_responses_anon.xlsx: Contains the anonymized responses from the expert panel.

data/enms_grouping.txt: Contains a categorization of the ENMs based on their core material.

data/expert_bibliographies_anon.pickle: Contains the anonymized bibliography of the experts to assess the multidisciplinarity of the panel assembled.

data/gex.csc.gz: Contains the gene expression after exposure to the ENMs.

data/phenodata.txt: Contains the meta-data of the experiments

data/physicochemical_descriptors.txt: Contains the physicochemical descriptors of the ENMs.

data/external/nn8b07562_si_001.xlsx: Contains a panel of harmonized ENMs cytotoxicity assays.

outputs/concern_scores.csv: Contains the consensus scores inferred by the statistical model.

outputs/cross_validation/: Contains the logs and performances of all the machine learning classification runs .

outputs/important_{genes,physchem}_weighted.xlsx: Feature relevance scores of both views.

outputs/model_inference_anon.nc: Inferred parameters of the statistical model.
DOI: 10.6084/m9.figshare.22350907
title: Megafauna diversity and functional declines in Europe from the Last Interglacial to the present

description: <b>Aim:</b> Reconstructing megafauna diversity in a past before anthropogenic impacts is crucial for developing targeted restoration strategies. We estimated the diversity and functional decline of European megafauna in the present compared to the nearest in time climate period analogue to the present but prior to the worldwide diffusion of Homo sapiens.<b>Location: </b>Europe.<b>Time period: </b>Last Interglacial (LIG; ca. 127,000 years ago) to present.<b>Major taxa studied: </b>Wild, large (≥10 kg) terrestrial mammals.<b>Methods: </b>We assessed the distribution of 48 European megafauna species during the LIG using hindcasting modelling and fossil records. Then, we estimated the decline in megafauna community diversity and potential trait-based functional effects from the LIG to the present, accounting for climate differences between the two periods.<b>Results: </b>Species richness and community biomass dropped by 70.8% (± 11.7%) and by 94.5% (± 9.9%). Functional diversity dropped by 80.3% (± 15.3%) for herbivores and by 64.9% (± 29.1%) for carnivores, while trait-informed potential vegetation and meat consumptions dropped by 82.3% (± 13.4%) and 60.5% (± 26.0%). The loss in megafauna diversity and associated ecological processes were high everywhere, but particularly in western Europe for carnivores and in the East European Plain for herbivores. Potential megafauna richness in the two periods were similar if only climate-driven differences were considered.<b>Main conclusions: </b>Severe, size-biased defaunation has degraded megafauna assemblages and megafauna-mediated ecological processes across Europe from the LIG to the present. These patterns cannot be explained by climate differences between the two periods, thus were likely driven by prehistoric Homo sapiens. The results suggest that the structure of wild ecosystems of the present strongly deviates from the evolutionary norm, with decreased functional heterogeneity and decreased fluxes of biogeochemical compounds across the trophic networks, highlighting the importance of ambitious policies of megafauna community restoration to support ecosystems functioning.
DOI: 10.6084/m9.figshare.22350907.v2
title: Megafauna diversity and functional declines in Europe from the Last Interglacial (LIG) to the present

description:  We estimated European megafauna diversity and functional declines from the Last Interglacial (LIG) - the nearest in time modern-analogue climate period prior to the arrival of<em> Homo sapiens (cc. 127,000 year ago)</em> - to the present. We used a combination of fossil records, hindcasting modelling, and trait.based ecology
DOI: 10.48597/63bg-dzdh
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/8cnj-agtr
title: Chloride at Birkenes

description: Measurement of Chloride at Birkenes
DOI: 10.48597/a7wv-hnwc
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/aegh-ywea
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/bace-gsen
title: Sodium at Birkenes

description: Measurement of Sodium at Birkenes
DOI: 10.48597/derw-r6pm
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/fnec-sf5r
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/fzpf-czgx
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/gvhs-a4qu
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/jmj6-qexx
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/ksce-yhe3
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/nvj4-eqdn
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/nyt5-dmm7
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/pqtz-ehz7
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/r2tu-qm7h
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/wjdg-pkq5
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/x8er-qrb5
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/zs54-hzyu
title: pH at Birkenes

description: Measurement of pH at Birkenes
DOI: 10.48597/2wsg-krmz
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/9zd2-xr7q
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/2cg5-cmrh
title: Chloride at Birkenes

description: Measurement of Chloride at Birkenes
DOI: 10.48597/2p8n-b2gr
title: Sodium at Birkenes

description: Measurement of Sodium at Birkenes
DOI: 10.48597/8ja3-jpn7
title: Precipitation_amount at Birkenes

description: Measurement of Precipitation_amount at Birkenes
DOI: 10.48597/baz3-g5xt
title: Calcium at Birkenes

description: Measurement of Calcium at Birkenes
DOI: 10.48597/j5jw-w9fx
title: Ammonium at Birkenes

description: Measurement of Ammonium at Birkenes
DOI: 10.48597/qfxz-9na4
title: Magnesium at Birkenes

description: Measurement of Magnesium at Birkenes
DOI: 10.48597/quph-9ngr
title: pH at Birkenes

description: Measurement of pH at Birkenes
DOI: 10.48597/s45g-86vu
title: Nitrate at Birkenes

description: Measurement of Nitrate at Birkenes
DOI: 10.48597/scu3-vqhz
title: Conductivity at Birkenes

description: Measurement of Conductivity at Birkenes
DOI: 10.48597/srug-96vh
title: Sulphate_total at Birkenes

description: Measurement of Sulphate_total at Birkenes
DOI: 10.48597/x4jy-5av6
title: Potassium at Birkenes

description: Measurement of Potassium at Birkenes
DOI: 10.48597/y42b-v84h
title: Sulphate_corrected at Birkenes

description: Measurement of Sulphate_corrected at Birkenes
DOI: 10.48597/c5fq-duph
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/49gn-5d39
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/syzf-9faj
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/5x8d-2juf
title: Measurement of Chloride at Birkenes

description: Measurement of Chloride at Birkenes
DOI: 10.48597/7ujq-r6v4
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/bvzq-z75d
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/hkk2-9355
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/hwjw-fkeq
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/khds-dj7p
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/s82m-ruw4
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/utzd-nugp
title: Measurement of Sodium at Birkenes

description: Measurement of Sodium at Birkenes
DOI: 10.48597/vww2-he43
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/yga9-jp7v
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/5yzh-rwym
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/c34w-xzur
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/extu-r3sv
title: Measurement of pH at Birkenes

description: Measurement of pH at Birkenes
DOI: 10.48597/jj3r-gz3n
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/tbby-66gr
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/un4z-2s5y
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/uukm-j3w2
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/5uum-zgxb
title: Measurement of Chloride at Birkenes

description: Measurement of Chloride at Birkenes
DOI: 10.48597/wcw8-mj2f
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/65qw-3qzs
title: Measurement of Potassium at Birkenes

description: Measurement of Potassium at Birkenes
DOI: 10.48597/b4av-bh55
title: Measurement of pH at Birkenes

description: Measurement of pH at Birkenes
DOI: 10.48597/bc8k-gf3v
title: Measurement of Sodium at Birkenes

description: Measurement of Sodium at Birkenes
DOI: 10.48597/cw5n-wvt3
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/eaat-vhkm
title: Measurement of Nitrate at Birkenes

description: Measurement of Nitrate at Birkenes
DOI: 10.48597/ehtu-e99c
title: Measurement of Conductivity at Birkenes

description: Measurement of Conductivity at Birkenes
DOI: 10.48597/fjw7-sx3u
title: Measurement of Ammonium at Birkenes

description: Measurement of Ammonium at Birkenes
DOI: 10.48597/hkgn-yj52
title: Measurement of Precipitation_amount at Birkenes

description: Measurement of Precipitation_amount at Birkenes
DOI: 10.48597/juu5-j38v
title: Measurement of Sulphate_total at Birkenes

description: Measurement of Sulphate_total at Birkenes
DOI: 10.48597/nevh-uw2h
title: Measurement of Calcium at Birkenes

description: Measurement of Calcium at Birkenes
DOI: 10.48597/tdn9-669w
title: Measurement of Magnesium at Birkenes

description: Measurement of Magnesium at Birkenes
DOI: 10.48597/wv3r-jc56
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/bfqf-6t53
title: Measurement of Sulphate_corrected at Birkenes

description: Measurement of Sulphate_corrected at Birkenes
DOI: 10.48597/kucp-nfsv
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.6084/m9.figshare.27303738
title: Prescribed fire on grassland

description: <b>Prescribed fire</b><b>: the most nature-based solution for managing global grassland ecosystem</b>
DOI: 10.6084/m9.figshare.27303738.v1
title: Prescribed fire on grassland

description: <b>Prescribed fire</b><b>: the most nature-based solution for managing global grassland ecosystem</b>
DOI: 10.48597/x44t-dfeh
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/3swe-mc6z
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/4ajk-rbxh
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/pr87-sxjf
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/pxbk-4chu
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/7ttp-7pmw
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/5nqa-5kx3
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/9tzw-56xj
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/9vfx-n58z
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/adyd-npsn
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/an2x-h66u
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/b4qv-a6cp
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/cuks-x4h5
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/c4z9-6gtf
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/d2dr-npu8
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/ea95-cj9t
title: Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/edcq-y3e9
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/jrkm-cmvv
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/55f2-vbr9
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/g7eb-kcf6
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes