cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15388240
title: COInr a comprehensive, non-redundant COI database from NCBI-nt and BOLD

description: COInr is a non-redundant, comprehensive database of COI sequences extracted from NCBI-nt and BOLD. It is not limited to a taxon, a gene region, or a taxonomic resolution. Sequences are dereplicated between databases and within taxa.


Each taxon has a unique taxonomic Identifier (taxID), fundamental to avoid ambiguous associations of homonyms and synonyms in the source database. TaxIDs form a coherent hierarchical system fully compatible with the NCBI taxIDs allowing creating their full or ranked linages.
 
COInr is a good starting point to create custom databases according to the users’ needs using mkCOInr scripts available at https://github.com/meglecz/mkCOInr  
It is possible to select/eliminate sequences for a list of taxa, select a specific gene region, select for minimum taxonomic resolution, add new custom sequences, and format the database for BLAST, QIIME, RDP classifiers.


 
description: COInr_2025_05_11 introduces changes in the selection of BOLD sequences compared to previous versions of COInr. Due to the relativelly frequent incorrectly labelled BOLD sequences among the ones lacking a BIN_URI, the following compromise has been adopted:





For taxa that include other sequences with a BIN_URI, sequences without a BIN_URI are excluded from COInr.




For taxa that only have sequences without a BIN_URI, those sequences are included in COInr.
DOI: 10.5281/zenodo.15515860
title: COInr a comprehensive, non-redundant COI database from NCBI-nt and BOLD

description: COInr is a non-redundant, comprehensive database of COI sequences extracted from NCBI-nt and BOLD. It is not limited to a taxon, a gene region, or a taxonomic resolution. Sequences are dereplicated between databases and within taxa.


Each taxon has a unique taxonomic Identifier (taxID), fundamental to avoid ambiguous associations of homonyms and synonyms in the source database. TaxIDs form a coherent hierarchical system fully compatible with the NCBI taxIDs allowing creating their full or ranked linages.
 
COInr is a good starting point to create custom databases according to the users’ needs using mkCOInr scripts available at https://github.com/meglecz/mkCOInr  
It is possible to select/eliminate sequences for a list of taxa, select a specific gene region, select for minimum taxonomic resolution, add new custom sequences, and format the database for BLAST, QIIME, RDP classifiers.


 
description: COInr_2025_05_11 introduces changes in the selection of BOLD sequences compared to previous versions of COInr. Due to the relativelly frequent incorrectly labelled BOLD sequences among the ones lacking a BIN_URI, the following compromise has been adopted:





For taxa that include other sequences with a BIN_URI, sequences without a BIN_URI are excluded from COInr.




For taxa that only have sequences without a BIN_URI, those sequences are included in COInr.
description: Due to changes in NCBI taxonomy taxonomic rangs (domain vs. superkingdom), COInr_2025_05_11 had slightly incoherent taxID and lineages.

The latest version of mkCOInr (mkCOInr v.0.5.0) has been adapted to the new NCBI taxonomy file and the new version of the COInr (COInr_2025_05_23) replaces the previous (COInr_2025_05_11).
DOI: 10.5281/zenodo.6555984
title: COInr a comprehensive, non-redundant COI database from NCBI-nt and BOLD

description: COInr is a non-redundant, comprehensive database of COI sequences extracted from NCBI-nt and BOLD. It is not limited to a taxon, a gene region, or a taxonomic resolution. Sequences are dereplicated between databases and within taxa.


Each taxon has a unique taxonomic Identifier (taxID), fundamental to avoid ambiguous associations of homonyms and synonyms in the source database. TaxIDs form a coherent hierarchical system fully compatible with the NCBI taxIDs allowing creating their full or ranked linages.
 
COInr is a good starting point to create custom databases according to the users’ needs using mkCOInr scripts available at https://github.com/meglecz/mkCOInr  
It is possible to select/eliminate sequences for a list of taxa, select a specific gene region, select for minimum taxonomic resolution, add new custom sequences, and format the database for BLAST, QIIME, RDP classifiers.


 
description: COInr_2025_05_11 introduces changes in the selection of BOLD sequences compared to previous versions of COInr. Due to the relativelly frequent incorrectly labelled BOLD sequences among the ones lacking a BIN_URI, the following compromise has been adopted:





For taxa that include other sequences with a BIN_URI, sequences without a BIN_URI are excluded from COInr.




For taxa that only have sequences without a BIN_URI, those sequences are included in COInr.
description: Due to changes in NCBI taxonomy taxonomic rangs (domain vs. superkingdom), COInr_2025_05_11 had slightly incoherent taxID and lineages.

The latest version of mkCOInr (mkCOInr v.0.5.0) has been adapted to the new NCBI taxonomy file and the new version of the COInr (COInr_2025_05_23) replaces the previous (COInr_2025_05_11).
DOI: 10.5281/zenodo.6555985
title: COInr a comprehensive, non-redundant COI database from NCBI-nt and BOLD

description: COInr is a non-redundant, comprehensive database of COI sequences extracted from NCBI-nt and BOLD. It is not limited to a taxon, a gene region, or a taxonomic resolution. Sequences are dereplicated between databases and within taxa. Each taxon has a unique taxonomic Identifier (taxID), fundamental to avoid ambiguous associations of homonyms and synonyms in the source database. TaxIDs form a coherent hierarchical system fully compatible with the NCBI taxIDs allowing creating their full or ranked linages.<br> <br> COInr is a good starting point to create custom databases according to the users’ needs using mkCOInr scripts available at https://github.com/meglecz/mkCOInr <br> It is possible to select/eliminate sequences for a list of taxa, select a specific gene region, select for minimum taxonomic resolution, add new custom sequences, and format the database for BLAST, QIIME, RDP classifiers.
DOI: 10.5281/zenodo.7898363
title: COInr a comprehensive, non-redundant COI database from NCBI-nt and BOLD

description: COInr is a non-redundant, comprehensive database of COI sequences extracted from NCBI-nt and BOLD. It is not limited to a taxon, a gene region, or a taxonomic resolution. Sequences are dereplicated between databases and within taxa. Each taxon has a unique taxonomic Identifier (taxID), fundamental to avoid ambiguous associations of homonyms and synonyms in the source database. TaxIDs form a coherent hierarchical system fully compatible with the NCBI taxIDs allowing creating their full or ranked linages.<br> <br> COInr is a good starting point to create custom databases according to the users’ needs using mkCOInr scripts available at https://github.com/meglecz/mkCOInr <br> It is possible to select/eliminate sequences for a list of taxa, select a specific gene region, select for minimum taxonomic resolution, add new custom sequences, and format the database for BLAST, QIIME, RDP classifiers.
DOI: 10.15468/dl.zu38t7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kadsura celebica A.C.Sm."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001175-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15515920
title: ACEM 9982 - raw data
DOI: 10.5281/zenodo.15515921
title: ACEM 9982 - raw data
DOI: 10.15468/dl.ac3u76
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kadsura marmorata (E.G.Hend. & A.J.Hend.) A.C.Sm."
 ]
}

 The dataset includes 119 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001178-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aj6425
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kadsura lanceolata King"
 ]
}

 The dataset includes 84 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001177-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ht9zf6
title: Occurrence Download

description: A dataset containing 31466874 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nymphalidae",
 "Year 1990-2025"
 ]
}

 The dataset includes 31466874 records from 7573 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001174-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/e5n-y8y-2bt
title: Euphorbia amygdaloides L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ehq-wy7-b3m
title: Geranium pusillum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/f3j-47q-97c
title: Plantago urvillei Opiz

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/yb0-mvl-j36
title: Thinopyrum intermedium subsp. intermedium

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/b9t-5gh-v8x
title: Lonicera nigra L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0t7-10y-3v7
title: Agrimonia eupatoria L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lby-lht-vhd
title: Epilobium collinum C. C. Gmel.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rre-xvl-kt3
title: Lomelosia stellata (L.) Raf.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.xb8adq
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Platea excelsa"
 ]
}

 The dataset includes 111 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066158-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/lkf-3g1-12e
title: Lonicera nigra L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7q0-yj1-8ap
title: Epilobium palustre L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/frm-gbt-gfe
title: Verbascum nigrum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hds-gmk-drz
title: Euphorbia L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/k23-maz-qab
title: Festuca rupicola Heuff.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pgn-aaj-29p
title: Aconitum firmum Rchb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7ep-llf-smw
title: Haplophyllum linifolium subsp. linifolium

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rsz-l4w-ltp
title: Holcus lanatus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/38f-zv8-0hw
title: Mercurialis tomentosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/8d1-42j-ff7
title: Crambe hispanica L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xy8-rad-c4a
title: Atractylis cancellata L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/naz-34m-07d
title: Chrysojasminum fruticans (L.) Banfi

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ydr-5yt-f6j
title: Euphorbia falcata L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/aa6-vcn-0bk
title: Euphorbia characias L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/x6z-elv-9d9
title: Nepeta tuberosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/m4d-0fd-1mz
title: Carex flava L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0fa-n6h-xh1
title: Epilobium parviflorum Schreb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ejv-86p-7fk
title: Carex remota L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/x5f-kqw-5sh
title: Ulmus laevis Pall.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9j8-67n-5qc
title: Euphorbia serrata L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9r4-qz8-lsa
title: Alopecurus geniculatus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/r6k-rtn-krc
title: Bupleurum semicompositum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.d2mk3h
title: Occurrence Download

description: A dataset containing 630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Aquila nipalensis"
 ]
}

 The dataset includes 630 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066157-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/dg5-kl7-hn6
title: Thapsia garganica L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/07v-cxc-1vw
title: Ulmus laevis Pall.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wxe-qsa-54r
title: Anacamptis pyramidalis (L.) Rich.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.ueqe8p
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tramitichromis variabilis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066156-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/h3q-yv6-vpt
title: Ononis spinosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pz4-n7z-sk5
title: Parapholis incurva (L.) C.E.Hubb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7bh-atq-p58
title: Medicago lupulina L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/adl-b9r-hja
title: Torilis nodosa (L.) Gaertn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hgq-9a0-65a
title: Trifolium spadiceum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/8l3-e2p-kfb
title: Spiraea media Schmidt

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zcb-bq9-78j
title: Hieracium sabaudum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.vhyr5f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Hyloscirtus palmeri)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066159-250717081556266/datasets/export for details.
DOI: 10.3535/081-zy8-1yy
title: Centaurium maritimum (L.) Fritsch

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bhr-sne-1mw
title: Thapsia minor Hoffmanns. & Link

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7xk-6ac-f7m
title: Parietaria mauritanica Durieu

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/qaa-3pz-jsy
title: Hypochaeris radicata L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/smh-fa4-xq2
title: Pistacia terebinthus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/q7e-a4d-q07
title: Nanorrhinum sagittatum (Poir.) Yousefi & Zarre

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/qkj-984-3l8
title: Bellardia trixago (L.) All.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zap-e95-asp
title: Cistus crispus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zzv-x4p-2ss
title: Paronychia echinulata Chater

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7lb-k23-850
title: Dactylorhiza viridis (L.) R.M.Bateman, Pridgeon & M.W.Chase

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/axs-by8-tnb
title: Gymnadenia conopsea (L.) R.Br.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7n4-8p9-sta
title: Galium boreale L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/nvd-tjh-xss
title: Polygala amara L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/a3r-xsd-3t3
title: Neotinea ustulata (L.) R.M.Bateman, Pridgeon & M.W.Chase

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hg4-rz9-yav
title: Thymus mastichina (L.) L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/mt5-gzn-2q8
title: Goodyera repens (L.) R.Br.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6zr-s1b-5lh
title: Dactylorhiza majalis subsp. majalis

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/w52-gwv-yxa
title: Malaxis monophyllos (L.) Sw.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ewr-4gw-2vy
title: Potentilla rigoana Th. Wolf

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/511-rty-mzx
title: Cota tinctoria subsp. tinctoria

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/g8j-m00-fxm
title: Trifolium hybridum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jsw-6qx-bw0
title: Potentilla rigoana Th. Wolf

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/w93-1nm-4kh
title: Cytisus nigricans L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/elb-syc-wc2
title: Helictochloa versicolor (Vill.) Romero Zarco

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vtk-6ca-f11
title: Trifolium fragiferum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/j9v-wl6-wm4
title: Agrostemma githago L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rg5-f5f-8r4
title: Astragalus onobrychis L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.jz2fb7
title: Occurrence Download

description: A dataset containing 99027 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Amblyraja radiata"
 ]
}

 The dataset includes 99027 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066071-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/hzz-3dk-pg3
title: Millettia griffoniana Baill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/76j-z9r-1y8
title: Thapsia nitida Lacaita

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/w8l-6jd-l9m
title: Oenothera biennis L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hvl-378-13m
title: Euphorbia sulcata Lens ex Loisel.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xjf-pnx-r6t
title: Thapsia villosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/b1n-j9y-c5t
title: Baphia nitida G.Lodd.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lf9-tns-rql
title: Carlina biebersteinii subsp. brevibracteata (Andrae) K. Werner

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5lr-qer-h22
title: Thapsia villosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bms-36x-3yq
title: Nonea Medik.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wfr-1y7-t09
title: Lamium amplexicaule L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/kpl-xws-nxe
title: Berlinia bracteosa Benth.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/m2z-fyp-qma
title: Lamium maculatum (L.) L.

description: Digital Specimen for the physical specimen hosted at University of Graz.