cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bepxwh
title: Occurrence Download

description: A dataset containing 500 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is one of (ITA.5_1, ITA.2_1, ITA.12_1, ITA.8_1, ITA.1_1, ITA.3_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Cervus elaphus Linnaeus, 1758, Dama dama (Linnaeus, 1758), Capreolus capreolus (Linnaeus, 1758))"
 ]
}

 The dataset includes 500 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005526-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b47s3t
title: Occurrence Download

description: A dataset containing 51962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phylloscopus bonelli (Vieillot, 1819)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 51962 records from 408 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005517-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w9dyub
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Selenophorus pedicularius Dejean, 1829",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 169 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005528-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y42eaf
title: Occurrence Download

description: A dataset containing 14805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Lissanthe R.Br."
 ]
}

 The dataset includes 14805 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005529-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3x7n85
title: Occurrence Download

description: A dataset containing 7642 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phylloscopus borealis (J.H.Blasius, 1858)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 7642 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005531-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bguphy
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Selenophorus granarius Dejean, 1829",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 67 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005532-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gz3942
title: Occurrence Download

description: A dataset containing 1179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Litchi Sonn."
 ]
}

 The dataset includes 1179 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005533-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ggd8m
title: Occurrence Download

description: A dataset containing 137490 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Big Hedgehog Map records"
 ]
}

 The dataset includes 137490 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005525-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48324/dandi.001453/0.250518.1950
title: Neural circuits underlying divergent visuomotor strategies of zebrafish and Danionella cerebrum

description: This dataset was used in "Neural circuits underlying divergent visuomotor strategies of zebrafish and Danionella cerebrum" (Current Biology, 2025, https://doi.org/10.1016/j.cub.2025.04.027).

Many animals respond to sensory cues with species-specific coordinated movements.1,2 A universal visually guided behavior is the optomotor response (OMR),3,4,5,6 which stabilizes the body by following optic flow induced by displacements in currents.7 While the brain-wide OMR circuits in zebrafish (Danio rerio) have been characterized,8,9,10,11,12 the homologous neural functions across teleost species with different ecological niches, such as Danionella cerebrum,13,14,15 remain largely unexplored. Here, we directly compare larval zebrafish and D. cerebrum to uncover the neural mechanisms underlying the natural variation of visuomotor coordination. Closed-loop behavioral tracking during visual stimulation revealed that D. cerebrum follow optic flow by swimming continuously, punctuated with sharp directional turns, in contrast to the burst-and-glide locomotion of zebrafish.16 Although D. cerebrum swim at higher average speeds, they lack the direction-dependent velocity modulation observed in zebrafish. Two-photon calcium imaging and tail tracking showed that both species exhibit direction-selective encoding in putative homologous regions, with D. cerebrum containing more monocular neurons. D. cerebrum sustain significantly longer directed swims across all stimuli than zebrafish, with zebrafish reducing tail movement duration in response to oblique, turn-inducing stimuli. While locomotion-associated neurons in D. cerebrum display more prolonged activity than zebrafish, lateralized turn-associated neural activity in the hindbrain suggests a shared neural circuit architecture that independently controls movement vigor and direction. These findings highlight the diversity in visuomotor strategies among teleost species with shared circuit motifs, establishing a framework for unraveling the neural mechanisms driving continuous and discrete locomotion.
DOI: 10.15468/dl.8d379n
title: Occurrence Download

description: A dataset containing 8730 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phylloscopus canariensis (Hartwig, 1886)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 8730 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005535-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjr2gd
title: Occurrence Download

description: A dataset containing 500 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Discoderus impotens (LeConte, 1858)",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 500 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005536-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11862887
title: Daftar Pengadilan Indonesia
DOI: 10.5281/zenodo.15460002
title: lethrinus_variegatus_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.15460003
title: lethrinus_variegatus_zanfona_1.fasta.gz
DOI: 10.15468/dl.dyt8r3
title: Occurrence Download

description: A dataset containing 383 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Anisodactylus opaculus (LeConte, 1863)",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 383 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005541-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9qbvvw
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "GadmGid is TUR.41_1",
 "TaxonKey is Caretta caretta (Linnaeus, 1758)"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005540-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15460010
title: hypericum_foliosum_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.15460011
title: hypericum_foliosum_zanfona_1.fasta.gz
DOI: 10.15468/dl.rq8av9
title: Occurrence Download

description: A dataset containing 602 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cyclotrachelus substriatus (LeConte, 1846)",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 602 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005545-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ahsqk
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diabroctis cadmus (Harold, 1868)"
 ]
}

 The dataset includes 242 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005546-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11862910
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.15459986
title: Adoption of preprinting by universities

description: This data set provides statistics on the adoption of preprinting by universities in the CWTS Leiden Ranking Open Edition 2024. For each combination of a university and a discipline, the data set provides the number of peer-reviewed outputs in the period 2021-2022 and the number and proportion of peer-reviewed outputs in this period that have been preprinted.
DOI: 10.5281/zenodo.15459987
title: Adoption of preprinting by universities

description: This data set provides statistics on the adoption of preprinting by universities in the CWTS Leiden Ranking Open Edition 2024. For each combination of a university and a discipline, the data set provides the number of peer-reviewed outputs in the period 2021-2022 and the number and proportion of peer-reviewed outputs in this period that have been preprinted.
DOI: 10.15468/dl.xjgbwg
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Anisodactylus furvus LeConte, 1863",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 327 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005548-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgxqq4
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ixodida",
 "StateProvince is Louisiana"
 ]
}

 The dataset includes 159 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005550-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15459912
title: The Rise of UPI and Its Impact on Traditional Banking in India

description: This master’s thesis examines the rapid growth of the Unified Payments Interface (UPI) in India and its transformative effects on traditional banking systems. It analyzes how UPI has changed consumer payment behavior, impacted bank operations, and influenced financial inclusion. Through qualitative and quantitative research, the study explores the challenges and opportunities faced by conventional banks in adapting to this digital payment revolution.
DOI: 10.5281/zenodo.15459913
title: The Rise of UPI and Its Impact on Traditional Banking in India

description: This master’s thesis examines the rapid growth of the Unified Payments Interface (UPI) in India and its transformative effects on traditional banking systems. It analyzes how UPI has changed consumer payment behavior, impacted bank operations, and influenced financial inclusion. Through qualitative and quantitative research, the study explores the challenges and opportunities faced by conventional banks in adapting to this digital payment revolution.
DOI: 10.15468/dl.u28asq
title: Occurrence Download

description: A dataset containing 99266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Lithospermum L."
 ]
}

 The dataset includes 99266 records from 1024 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005537-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ep9ne2
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chinese Taipei",
 "OccurrenceStatus is Present",
 "TaxonKey is Allium ramosum L."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011462-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15478276
title: ppp_dataset_250521
DOI: 10.5281/zenodo.15478277
title: ppp_dataset_250521
DOI: 10.5281/zenodo.15553940
title: Metadatabase for Dynamics of Risk Drivers
title: A metadata catalogue of data, algorithms and methods to assess dynamic risks

description: MYRIAD-EU has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 101003276.

The Metadatabase for Dynamics of Risk Drivers is an online catalogue of data, algorithms and methods to (empirically) assess dynamics and feedbacks of risk drivers. The metadatabase contains information on methods, algorithms and data produced within the MYRIAD-EU project and beyond. It is intended to be used by scientists and practitioners in the field of disaster risk modelling and presents them with metadata attributes and references. We apply existing terminology frameworks from within MYRIAD-EU and other international standards to ensure consistency between entries. The metadatabase is open for further contributions and contributors can suggest entries via our contribution form.

Please review the license corresponding to each entry in the metadatabase before using the corresponding methods, algorithms or data.
DOI: 10.34740/kaggle/dsv/13763624
title: Trending Youtube Video Statistics (113 Countries)
DOI: 10.15468/dl.46jhsq
title: Occurrence Download

description: A dataset containing 2131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is International Barcode of Life project (iBOL)",
 "TaxonKey is Halyomorpha halys"
 ]
}

 The dataset includes 2131 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038710-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u77p6v
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Oxypogon cyanolaemus"
 ]
}

 The dataset includes 60 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038711-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czrg6r
title: Occurrence Download

description: A dataset containing 148387 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Capra ibex"
 ]
}

 The dataset includes 148387 records from 207 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038698-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17630/7588cd36-c612-4342-8e1b-3282707866a1
title: A GWAS for grip strength in cohorts of children – advantages of analysing young participants for this trait (dataset)
DOI: 10.15468/dl.a5h4yc
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (, , Phoebe pallida, , , , , , , , , , , , Ocotea pallida, , Laurus pubescens, , , , , , , Persea pallida, , , )",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 22 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038712-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.reykd5
title: Occurrence Download

description: A dataset containing 908 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Attalea allenii",
 "HasCoordinate is true"
 ]
}

 The dataset includes 908 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038713-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17017464
title: Colibactin self resistance protein ClbS and ClbS like protein sequence data from the NORM hybrid assembly collection

description: Contains data about the colibactin self resistance protein ClbS and a putative ClbS like protein used in the study "Co-evolution between colibactin production and resistance is linked to clonal expansions in Escherichia coli".

References

Data

Isolation, sequencing, and assembly are described in the following two studies:

[1] Gladstone et al. "Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial population genomic study". The Lancet Microbe (2021). doi: 10.1016/S2666-5247(21)00031-8.

[2] Arredondo-Alonso et al. "Plasmid-driven strategies for clone success in Escherichia coli". Nature communications (2025). doi: 10.1038/s41467-025-57940-1.

Sequencing data is available from the European Nucleotide Archive under accession numbers PRJEB45354 and PRJEB57633.

Genome annotation

Genome annotation was performed using bakta v1.10.4 (GitHub: oschwengers/bakta) against full database v5.1 dated 2024-01-19 (doi: 10.5281/zenodo.10522951):

[3] Schwengers et al. "Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification." Microbial genomics (2021). doi: 10.1099/mgen.0.000685.

Annotation files are available in a separate Zenodo upload: doi: 10.5281/zenodo.17453317.

Protein alignment

Protein sequence similarity was computed with foldmason [4] against protein structure predictions extracted from AlphaFold [5].

[4] Gilchrist, C. L. M., Mirdita, M. & Steinegger, M. "Multiple protein structure alignment at scale with FoldMason." bioRxiv (2024) doi: 10.1101/2024.08.01.606130.

[5] Jumper, J. et al. "Highly accurate protein structure prediction with AlphaFold." Nature (2021). doi: 10.1038/s41586-021-03819-2.

Nucleotide similarity

Nucleotide sequence similarity was confirmed by using kbo [6] to find sequence homologs to representative clbS and clbS-like genes identified by protein alignment.

[6] Mäklin, T., Alanko, J. N., Biagi, E. & Puglisi, S. J. "Sequence alignment with k-bounded matching statistics." bioRxiv (2025) doi: 10.1101/2025.05.19.654936.