cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3153400.v2
title: CODE: DHPTMS

description: This repository contains the scripts used for finding differential histone post-translational modifications or DHPTMs.<br>Please consult the README.txt file for instructions on how to run the code.
DOI: 10.6084/m9.figshare.3153217.v1
title: Need for Speed RSOS

description: Steering bias of human travelling down a virtual road with biased optic flow. Optic flow speed was altered, as was optic flow asymmetry.<br>Published in:Kountouriotis, Mole, merat & Wilkie (2016) The need for speed: global optic flow speed influences steering. Royal Society Open Science
DOI: 10.6084/m9.figshare.3153406.v3
title: Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [CODE: CRMs]

description: This repository contains a binary MATLAB file with the trained RFECS trained forest used to make cis-regulatory module (CRM) predictions.<br>The references below explain specifically how to (1) access a MATLAB file and (2) how to use the current model file to predict the CRMs. For more details about the RFECS algorithm itself, take a look at reference (3).<br>
DOI: 10.6084/m9.figshare.3153160
title: Interaction of Catechu Dye with DNA: Spectroscopic and In Silico Approach

description: Catechin, a yellow colored molecule obtained from the wood of Acacia catechu was analyzed for its interaction with synthetic DNA duplexes using spectroscopic analysis. UV-Visible spectroscopic analysis revealed the non-intercalative binding mode. Fourier Transform Infrared spectroscopy (FTIR) analysis expose chemical shift indicated by various vibrational stretches and an increase in the intensity of base stacking was observed by Circular Dichroism (CD), respectively. This inference was further confirmed through nuclear staining technique and also in electrophoretic technique; the dye quenches the fluorescent intensity of ethidium bromide. The result of fluorescence spectroscopy was in concordance with the electrophoretic technique. In addition, the spectroscopic results were in accordance with the molecular docking studies of specific catechin compound from the catechu dye with CT-DNA. This kind of site specificity is a gain in the medicinal field as the drug can be DNA targeted for cancer therapeutics. The present work reveals that catechu dye has a noteworthy application in the field of medical bioscience.
DOI: 10.6084/m9.figshare.3153193.v1
title: Pre-processing

description: The scripts contained in this item were used to run part of the QC analysis of the reference below.
DOI: 10.6084/m9.figshare.3153406.v4
title: Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [CODE: CRMs]

description: This repository contains the positive and negative training sets generated from the ChIP-seq transcription factor and histone post-translational modification data. Such sets of data were run as input to the RFECS software. RFECS is a tailor-made random forest model for making cis-regulatory module (CRM) predictions. The random forest model used for making the predictions is also available in this repository as a binary MATLAB file.<br>The references below explain specifically how to (1) access a MATLAB file and (2), how to use the current model file to predict the CRMs. For more details about the RFECS algorithm itself, take a look at reference (3).<br>
DOI: 10.6084/m9.figshare.3153160.v1
title: Interaction of Catechu Dye with DNA: Spectroscopic and In Silico Approach

description: Catechin, a yellow colored molecule obtained from the wood of Acacia catechu was analyzed for its interaction with synthetic DNA duplexes using spectroscopic analysis. UV-Visible spectroscopic analysis revealed the non-intercalative binding mode. Fourier Transform Infrared spectroscopy (FTIR) analysis expose chemical shift indicated by various vibrational stretches and an increase in the intensity of base stacking was observed by Circular Dichroism (CD), respectively. This inference was further confirmed through nuclear staining technique and also in electrophoretic technique; the dye quenches the fluorescent intensity of ethidium bromide. The result of fluorescence spectroscopy was in concordance with the electrophoretic technique. In addition, the spectroscopic results were in accordance with the molecular docking studies of specific catechin compound from the catechu dye with CT-DNA. This kind of site specificity is a gain in the medicinal field as the drug can be DNA targeted for cancer therapeutics. The present work reveals that catechu dye has a noteworthy application in the field of medical bioscience.
DOI: 10.6084/m9.figshare.3153181.v1
title: Using Google Earth to improve management of threatened limestone karst ecosystems in Peninsular Malaysia

description: Biodiversity conservation is now about prioritisation, especially in a world with limited resources and so many habitats and species in need of protection. However, we cannot prioritise effectively if historical and current information on a particular habitat or species remains scattered. Several good platforms have been created to help users to find, use and create biodiversity information. However, good platforms for sharing habitat information for threatened ecosystems are still lacking. Limestone hills are an example of threatened ecosystems that harbour unique biodiversity, but are facing intensifying anthropogenic disturbances. As limestone is a vital resource for the construction industry, it is not possible to completely halt forest degradation and quarrying in developing countries such as Malaysia, where 445 limestone hills have been recorded in the peninsula to date. As such, there is an urgent need to identify which hills must be prioritised for conservation. To make decisions based on sound science, collating spatial and biological information on limestone hills into a publicly accessible database is critical. Here, we compile Malaysia’s first limestone hill GIS map for 445 limestone hills in the peninsula based on information from geological reports and scientific literature. To assist in conservation prioritisation efforts, we quantify characteristics of limestone hills in terms of size, degree of isolation, and spatial distribution patterns and also assessed the degree of habitat disturbance of each limestone hill in terms of buffer area forest degradation and quarrying activity. All this information is stored in a KMZ file and can be accessed through the Google Earth interface. This product should not be viewed as a final output containing basic limestone hill information. Rather, this database is a foundational platform for users to collect, store, update and manipulate spatial and biological data from limestone hills to better inform decisions regarding their management.
DOI: 10.6084/m9.figshare.3153400.v3
title: Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [CODE: DHPTMS]

description: This repository contains the various scripts and files used to identify differential histone post-translational modifications (DHPTMs).<br>The complete details about the various scripts and files in this repository, as well as the set of commands used to run the analysis, are included in the file README.txt<br>
DOI: 10.6084/m9.figshare.3153145
title: MathQuestions.data

description: This data set contains the data about 269818 questions posted in the Mathematics Q&A community of StackExchange network for the period from July 2010, until the end of April 2014. The dataset was downloaded on 5 May, 2014. <br>Each line corresponds to one question and it contains the following information:<br>Time(Unix format) QuestionID Tag1 Tag2 ... Tag5<br><br>Each question can be tagged by 1-5 tags.<br><br>
DOI: 10.6084/m9.figshare.3153145.v1
title: MathQuestions.data

description: This data set contains the data about 269818 questions posted in the Mathematics Q&A community of StackExchange network for the period from July 2010, until the end of April 2014. The dataset was downloaded on 5 May, 2014. <br>Each line corresponds to one question and it contains the following information:<br>Time(Unix format) QuestionID Tag1 Tag2 ... Tag5<br><br>Each question can be tagged by 1-5 tags.<br><br>
DOI: 10.6084/m9.figshare.3153406.v5
title: Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [CODE: CRMs]

description: This repository contains the positive and negative training sets generated from the ChIP-seq transcription factor and histone post-translational modification data. Such sets of data were run as input to the RFECS software. RFECS is a tailor-made random forest model for making cis-regulatory module (CRM) predictions. The random forest model used for making the predictions is also available in this repository as a binary MATLAB file.<br>The references below explain specifically how to (1) access a MATLAB file and (2), how to use the current model file to predict the CRMs. For more details about the RFECS algorithm itself, take a look at reference (3).<br>
DOI: 10.6084/m9.figshare.3153133
title: GaceC10 infrared spectrum O=C1C(N=CN2[C@@]3([H])[C@@](OC(C)(C)O4)([H])[C@@]4([H])[C@](COC(CCCCCCCCC)=O)([H])O3)=C2N=C(N)N1

description: Infrared spectrum solid state acquired with diamond ATR attachment of "GaceC10" sample I-AH-1SMILES O=C1C(N=CN2[C@@]3([H])[C@@](OC(C)(C)O4)([H])[C@@]4([H])[C@](COC(CCCCCCCCC)=O)([H])O3)=C2N=C(N)N1 2',3'-<i>O</i>-Isopropylidene-5'-decanoylguanosine <br>
DOI: 10.6084/m9.figshare.3153181.v2
title: Using Google Earth to improve management of threatened limestone karst ecosystems in Peninsular Malaysia

description: Biodiversity conservation is now about prioritisation, especially in a world with limited resources and so many habitats and species in need of protection. However, we cannot prioritise effectively if historical and current information on a particular habitat or species remains scattered. Several good platforms have been created to help users to find, use and create biodiversity information. However, good platforms for sharing habitat information for threatened ecosystems are still lacking. Limestone hills are an example of threatened ecosystems that harbour unique biodiversity, but are facing intensifying anthropogenic disturbances. As limestone is a vital resource for the construction industry, it is not possible to completely halt forest degradation and quarrying in developing countries such as Malaysia, where 445 limestone hills have been recorded in the peninsula to date. As such, there is an urgent need to identify which hills must be prioritised for conservation. To make decisions based on sound science, collating spatial and biological information on limestone hills into a publicly accessible database is critical. Here, we compile Malaysia’s first limestone hill GIS map for 445 limestone hills in the peninsula based on information from geological reports and scientific literature. To assist in conservation prioritisation efforts, we quantify characteristics of limestone hills in terms of size, degree of isolation, and spatial distribution patterns and also assessed the degree of habitat disturbance of each limestone hill in terms of buffer area forest degradation and quarrying activity. All this information is stored in a KMZ file and can be accessed through the Google Earth interface. This product should not be viewed as a final output containing basic limestone hill information. Rather, this database is a foundational platform for users to collect, store, update and manipulate spatial and biological data from limestone hills to better inform decisions regarding their management.
DOI: 10.6084/m9.figshare.3153193.v2
title: CODE: Pre-processing

description: This repository contains the scripts used for doing part of the Quality Control (QC) results presented in the reference below.<br>Please consult the README.txt file for instructions on how to run the code for doing the QC.
DOI: 10.6084/m9.figshare.3153400.v4
title: Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [CODE: DHPTMS]

description: This repository contains the various scripts and files used to identify differential histone post-translational modifications (DHPTMs).<br>The complete details about the various scripts and files in this repository, as well as the set of commands used to run the analysis, are included in the file README.txt<br>
DOI: 10.6084/m9.figshare.3153124
title: A citation-based analysis and review of significant papers on timing and time perception

description: (1) The mat file contains a structure, papers with fields that contain the information presented in Table 1:<br>1. citations: number of citations2. article_type: 0 for reviews, 1 for empirical studies3. year_publication: year of publication4. age_publication: 2016 - year of publication5. normalized_citations: citations divided by age_publication<br>
DOI: 10.6084/m9.figshare.3153400.v6
title: Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [CODE: DHPTMs]

description: This repository contains the various scripts and files used to identify differential histone post-translational modifications (DHPTMs).<br>The complete details about the various scripts and files in this repository, as well as the set of commands used to run the analysis, are included in the file README.txt<br>
DOI: 10.6084/m9.figshare.3153133.v1
title: GaceC10 infrared spectrum O=C1C(N=CN2[C@@]3([H])[C@@](OC(C)(C)O4)([H])[C@@]4([H])[C@](COC(CCCCCCCCC)=O)([H])O3)=C2N=C(N)N1

description: Infrared spectrum solid state acquired with diamond ATR attachment of "GaceC10" sample I-AH-1SMILES O=C1C(N=CN2[C@@]3([H])[C@@](OC(C)(C)O4)([H])[C@@]4([H])[C@](COC(CCCCCCCCC)=O)([H])O3)=C2N=C(N)N1 2',3'-<i>O</i>-Isopropylidene-5'-decanoylguanosine <br>
DOI: 10.6084/m9.figshare.3153118
title: Tenthredo xueshanensis Togashi, 1980, holotype

description: <i><b>Tenthredo xueshanensis </b></i>Togashi, 1980, holotype <br>Togashi, I. 1980: Notes on Taiwanese sawflies. I. Hymenoptera, Tenthredinidae). - Kontyû, Tokyo 48(1): 30-34<br>Holotype: ♀. Taiwan: Xue shan (altitude 2,000 m), Tai zhong xian, July 6, 1973, K. KOJIMA leg.<br>
DOI: 10.6084/m9.figshare.3153181.v3
title: Using Google Earth to improve management of threatened limestone karst ecosystems in Peninsular Malaysia

description: Biodiversity conservation is now about prioritisation, especially in a world with limited resources and so many habitats and species in need of protection. However, we cannot prioritise effectively if historical and current information on a particular habitat or species remains scattered. Several good platforms have been created to help users to find, use and create biodiversity information. However, good platforms for sharing habitat information for threatened ecosystems are still lacking. Limestone hills are an example of threatened ecosystems that harbour unique biodiversity, but are facing intensifying anthropogenic disturbances. As limestone is a vital resource for the construction industry, it is not possible to completely halt forest degradation and quarrying in developing countries such as Malaysia, where 445 limestone hills have been recorded in the peninsula to date. As such, there is an urgent need to identify which hills must be prioritised for conservation. To make decisions based on sound science, collating spatial and biological information on limestone hills into a publicly accessible database is critical. Here, we compile Malaysia’s first limestone hill GIS map for 445 limestone hills in the peninsula based on information from geological reports and scientific literature. To assist in conservation prioritisation efforts, we quantify characteristics of limestone hills in terms of size, degree of isolation, and spatial distribution patterns and also assessed the degree of habitat disturbance of each limestone hill in terms of buffer area forest degradation and quarrying activity. All this information is stored in a KMZ file and can be accessed through the Google Earth interface. This product should not be viewed as a final output containing basic limestone hill information. Rather, this database is a foundational platform for users to collect, store, update and manipulate spatial and biological data from limestone hills to better inform decisions regarding their management.
DOI: 10.6084/m9.figshare.3153400.v5
title: Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [CODE: DHPTMS]

description: This repository contains the various scripts and files used to identify differential histone post-translational modifications (DHPTMs).<br>The complete details about the various scripts and files in this repository, as well as the set of commands used to run the analysis, are included in the file README.txt<br>
DOI: 10.6084/m9.figshare.3153193.v3
title: CODE: Pre-processing

description: This repository contains the scripts used for doing part of the Quality Control (QC) results presented in the reference below.<br>Please consult the README.txt file for instructions on how to run the code for doing the QC.
DOI: 10.6084/m9.figshare.3153118.v1
title: Tenthredo xueshanensis Togashi, 1980, holotype

description: <i><b>Tenthredo xueshanensis </b></i>Togashi, 1980, holotype <br>Togashi, I. 1980: Notes on Taiwanese sawflies. I. Hymenoptera, Tenthredinidae). - Kontyû, Tokyo 48(1): 30-34<br>Holotype: ♀. Taiwan: Xue shan (altitude 2,000 m), Tai zhong xian, July 6, 1973, K. KOJIMA leg.<br>
DOI: 10.6084/m9.figshare.3153115
title: Tenthredo smithiana Togashi,1977, male

description: <i><b>Tenthredo smithiana</b></i> Togashi,1977, male<br>Togashi, I. 1977: Two new species of the genus <i>Tenthredo</i> Linnaeus (Hymenoptera, Tenthredinidae) from Japan. - Kontyû, Tokyo 45(2): 247-252Togashi, I. 1977: A New Name for <i>Tenthredo smithi </i>Togashi. - Kontyû, Tokyo 45(4): 500
DOI: 10.6084/m9.figshare.3153124.v1
title: A citation-based analysis and review of significant papers on timing and time perception

description: (1)The mat file contains a structure, Table1_Data with fields that contain the information presented in Table 1:<br>1. citations: number of citations2. article_type: 0 for reviews, 1 for empirical studies3. year_publication: year of publication4. age_publication: 2016 - year of publication5. normalized_citations: citations divided by age_publication6. authors: names of authors<br>(2) Table 1 is also presented as a separate pdf document.
DOI: 10.6084/m9.figshare.3153115.v1
title: Tenthredo smithiana Togashi,1977, male

description: <i><b>Tenthredo smithiana</b></i> Togashi,1977, male<br>Togashi, I. 1977: Two new species of the genus <i>Tenthredo</i> Linnaeus (Hymenoptera, Tenthredinidae) from Japan. - Kontyû, Tokyo 45(2): 247-252Togashi, I. 1977: A New Name for <i>Tenthredo smithi </i>Togashi. - Kontyû, Tokyo 45(4): 500
DOI: 10.6084/m9.figshare.3153181.v4
title: Using Google Earth to improve management of threatened limestone karst ecosystems in Peninsular Malaysia

description: Biodiversity conservation is now about prioritisation, especially in a world with limited resources and so many habitats and species in need of protection. However, we cannot prioritise effectively if historical and current information on a particular habitat or species remains scattered. Several good platforms have been created to help users to find, use and create biodiversity information. However, good platforms for sharing habitat information for threatened ecosystems are still lacking. Limestone hills are an example of threatened ecosystems that harbour unique biodiversity, but are facing intensifying anthropogenic disturbances. As limestone is a vital resource for the construction industry, it is not possible to completely halt forest degradation and quarrying in developing countries such as Malaysia, where 445 limestone hills have been recorded in the peninsula to date. As such, there is an urgent need to identify which hills must be prioritised for conservation. To make decisions based on sound science, collating spatial and biological information on limestone hills into a publicly accessible database is critical. Here, we compile Malaysia’s first limestone hill GIS map for 445 limestone hills in the peninsula based on information from geological reports and scientific literature. To assist in conservation prioritisation efforts, we quantify characteristics of limestone hills in terms of size, degree of isolation, and spatial distribution patterns and also assessed the degree of habitat disturbance of each limestone hill in terms of buffer area forest degradation and quarrying activity. All this information is stored in a KMZ file and can be accessed through the Google Earth interface. This product should not be viewed as a final output containing basic limestone hill information. Rather, this database is a foundational platform for users to collect, store, update and manipulate spatial and biological data from limestone hills to better inform decisions regarding their management.
DOI: 10.6084/m9.figshare.3153124.v3
title: A citation-based analysis and review of significant papers on timing and time perception

description: (1) The mat file contains a structure, papers with fields that contain the information presented in Table 1:<br>1. citations: number of citations2. article_type: 0 for reviews, 1 for empirical studies3. year_publication: year of publication4. age_publication: 2016 - year of publication5. normalized_citations: citations divided by age_publication<br>
DOI: 10.6084/m9.figshare.3153193.v4
title: CODE: Pre-processing

description: This repository contains the scripts used for doing part of the Quality Control (QC) results presented in the reference below.<br>Please consult the README.txt file for instructions on how to run the code for doing the QC.
DOI: 10.6084/m9.figshare.3153112.v1
title: Tenthredo smithi Togashi,1977, holotype

description: <i><b>Tenthredo smithi </b></i>Togashi, 1977, holotype<br>(primary homonym of <i>Tenthredo smithii </i>W.F. Kirby, 1882)<br><br>Current placement: <i><b>Tenthredo smithiana</b></i> Togashi,1977 (replacement name for <i>Tenthredo smithi </i>Togashi, 1977)<br>Togashi, I. 1977: Two new species of the genus Tenthredo Linnaeus (Hymenoptera, Tenthredinidae) from Japan. - Kontyû, Tokyo 45(2): 247-252Togashi, I. 1977: A New Name for Tenthredo smithi Togashi. - Kontyû, Tokyo 45(4): 500<br>
DOI: 10.6084/m9.figshare.3153106.v1
title: Perineura sawai Togashi, 2007, holotype

description: <i><b>Perineura sawai </b></i>Togashi, 2007, holotype<br>current placement: <i>Tenthredo ferruginea</i> Schrank, 1776<br><br>Note. Togashi (2007) mentioned Y. Sawa as collector, but on the label I. Togashi is given as collector.<br><br>Togashi, I. 2007: Two New Species of the Perineura esakii Group (Hymenoptera, Tenthredinidae) from Japan. - Biogeography : international journal of biogeography, phylogeny, taxonomy, ecology, biodiversity, evolution, and conservation biology, Tokyo 9: 13-18<br>Synonymy by: Shinohara, A.; Hara, H. 2015: Taxonomic Notes and New Distribution and Host Plant Records for Sawflies and Woodwasps (Hymenoptera, Symphyta) of Japan. - Bulletin of the National Museum of Nature and Science, Series A (Zoology), Tokyo 41(3): 171-184.<br>