cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bgjf5h
title: Occurrence Download

description: A dataset containing 4577212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Fringilla coelebs Linnaeus, 1758"
 ]
}

 The dataset includes 4577212 records from 1532 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019581-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3gqh4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum vaginatum",
 "Country is Pakistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033802-250920141307145/datasets/export for details.
DOI: 10.15468/dl.xh2ctx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum vaginatum",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033801-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.geydwa
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum vaginatum",
 "Country is Palau",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033803-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17236749
title: Tabela de  Extração de Dados - IA no apoio ao diagnóstico do TEA
DOI: 10.5281/zenodo.17236750
title: Tabela de  Extração de Dados - IA no apoio ao diagnóstico do TEA
DOI: 10.57830/2315902
title: Springs monitoring data for Tuzigoot National Monument, Arizona: 2017-2025 - internal

description: This dataset contains long-term monitoring data for springs for Tuzigoot National Monument (2017-2025). Monitoring of seeps, springs, and tinajas provides information on these small and rare systems in parks of the National Park Service’s Chihuahuan Desert Network and Sonoran Desert Network. These systems are the primary connection between groundwater and surface water and are important water sources for plants and animals. The networks monitor a suite of springs vital signs and parameters organized into four modules: site characterization, site condition, water quantity, and water quality. The data were collected annually at one or more “sentinel sites” per park (sites chosen based on judgement and other criteria).
DOI: 10.5517/ccdc.csd.cc2krjc7
title: CCDC 2376099: Experimental Crystal Structure Determination

description: Related Article: Satyajit Pattanayak, Tuhin Sarkar, Ribhu Maity, Priyanka Das, Paula Brandao, Tithi Maity, Keka Sarkar, Bidhan Chandra Samanta|2025|New J.Chem.|49|16849|doi:10.1039/d5nj01809a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10903197
title: Heliconiini phenotypic classification

description: Summary

This repository contains the phenotypic classification for heliconiine butterfly subspecies applied for the analyses presented in this research paper:

 “Pérochon et al., 2025 - Müllerian Mimicry in Neotropical Butterflies: One Mimicry Ring to Bring Them All and in the Jungle Bind Them. Global Ecology and Biogeography, 34(9): e70127” https://doi.org/10.1111/geb.70127

 




Associated archives

Occurrences data associated with this classification can be found in this archive: https://doi.org/10.5281/zenodo.10906853.

Distribution maps built upon the occurrence data and phenotypic classification are available in an other associated archive: https://doi.org/10.5281/zenodo.10903661.

Scripts to reproduce these maps are available on Github at https://github.com/EddiePerochon/Heliconiini_Diversity.

 




Contents

This repository contains two folders and three files:





Type_pictures: 38 pictures of butterfly type taxa used as reference for each phenotypic group. Groups are separated between patterns found only in Heliconiini (types are Heliconiini), and patterns shared with Ithomiini (types are Ithomiini). Credit photos: Chris Jiggins.




Groups_shared_with_Ithomiini: 11 pictures of Heliconiini butterfly illustrating each phenotypic group shared with Ithomiini butterflies. Credits: Chris Jiggins. Type taxa of these pheontypic groups are ithomiine butterflies found in the Type_pictures folder and in the dedicated archive https://doi.org/10.5281/zenodo.5497876.




Heliconiini_phenotypic_classification.xlsx: Phenotypic classification of the 436 subspecies of Heliconiini butterflies + List of type taxa identifying each pattern for both levels used in analyses: split (Main test) and lump (Sensitivity analyses).




Plate_Phenotypic_groups_Heliconiini.pdf: Plate with illustration of all 38 phenotypic groups found in Heliconiini. Credit photos: Chris Jiggins.




Plate_Phenotypic_groups_Ithomiini.pdf: Plate with illustration of all 44 phenotypic groups found in Ithomiini. Credit photos: Chris Jiggins.






 

Contact

For any questions, contact the corresponding author: Maël Doré

 

How to cite

> Pérochon, E., Rosser, N., Kozak, K., McMillan, W.O., Huertas, B., Mallet, J., Ready, J., Willmott, K., Elias, M. & Doré, M. (2025). Müllerian Mimicry in Neotropical Butterflies: One Mimicry Ring to Bring Them All and in the Jungle Bind Them. Global Ecology and Biogeography, 34(9): e70127. https://doi.org/10.1111/geb.70127
DOI: 10.5281/zenodo.17236958
title: Heliconiini phenotypic classification

description: Summary

This repository contains the phenotypic classification for heliconiine butterfly subspecies applied for the analyses presented in this research paper:

 “Pérochon et al., 2025 - Müllerian Mimicry in Neotropical Butterflies: One Mimicry Ring to Bring Them All and in the Jungle Bind Them. Global Ecology and Biogeography, 34(9): e70127” https://doi.org/10.1111/geb.70127

 




Associated archives

Occurrences data associated with this classification can be found in this archive: https://doi.org/10.5281/zenodo.10906853.

Distribution maps built upon the occurrence data and phenotypic classification are available in an other associated archive: https://doi.org/10.5281/zenodo.10903661.

Scripts to reproduce these maps are available on Github at https://github.com/EddiePerochon/Heliconiini_Diversity.

 




Contents

This repository contains two folders and three files:





Type_pictures: 38 pictures of butterfly type taxa used as reference for each phenotypic group. Groups are separated between patterns found only in Heliconiini (types are Heliconiini), and patterns shared with Ithomiini (types are Ithomiini). Credit photos: Chris Jiggins.




Groups_shared_with_Ithomiini: 11 pictures of Heliconiini butterfly illustrating each phenotypic group shared with Ithomiini butterflies. Credits: Chris Jiggins. Type taxa of these pheontypic groups are ithomiine butterflies found in the Type_pictures folder and in the dedicated archive https://doi.org/10.5281/zenodo.5497876.




Heliconiini_phenotypic_classification.xlsx: Phenotypic classification of the 436 subspecies of Heliconiini butterflies + List of type taxa identifying each pattern for both levels used in analyses: split (Main test) and lump (Sensitivity analyses).




Plate_Phenotypic_groups_Heliconiini.pdf: Plate with illustration of all 38 phenotypic groups found in Heliconiini. Credit photos: Chris Jiggins.




Plate_Phenotypic_groups_Ithomiini.pdf: Plate with illustration of all 44 phenotypic groups found in Ithomiini. Credit photos: Chris Jiggins.






 

Contact

For any questions, contact the corresponding author: Maël Doré

 

How to cite

> Pérochon, E., Rosser, N., Kozak, K., McMillan, W.O., Huertas, B., Mallet, J., Ready, J., Willmott, K., Elias, M. & Doré, M. (2025). Müllerian Mimicry in Neotropical Butterflies: One Mimicry Ring to Bring Them All and in the Jungle Bind Them. Global Ecology and Biogeography, 34(9): e70127. https://doi.org/10.1111/geb.70127
DOI: 10.34810/data2575
title: Replication data for "Exploring Gastrointestinal Helminth Infections in Amazonian Non-Human Primates"

description: El lote de datos incluye la identificación de helmintos a partir de disecciones gastrointestinales de 11 especies de NHP en libertad (N = 190 individuos) donadas por cazadores indígenas de subsistencia en dos áreas, una bien conservada y otra contaminada con petróleo, en la región de Loreto en el noreste de la Amazonía peruana. La información recolectada incluye datos de lo primates e información de los helmintos encontrados en su interior, incluyendo taxonomía del helminto y carga parasitaria (número de helmintos encontrados para cada taxon). Cada registro contiene la ubicación geográfica. Este estudio contribuye a nuestra comprensión de la salud de los primates y la ecología de los parásitos en una región de alta biodiversidad, y proporciona información valiosa para comprender las posibles consecuencias del calentamiento global en la transmisión de infecciones parasitarias.
description: Excel, Microsoft 365
description: Cada entrada incluye el nombre de un individuo de especie de primate como dato inicial, luego incluye variables categóricas (Presencia de parásitos: sí/no) y numéricas (Carga parasitaria: Número total de individuos de una especie de parásito específica en un solo huésped) y de selección múltiple (por ejemplo, lugar de colecta). Esta base de datos también incluye las variables climáticas una área ed estuio, la única que dispone de esta información: cuenca del río Yavarí-Mirín. LAs variables climáticas incluye: nivel del agua del río (m.s.n.m.), la temperatura media mensual-anual (ºC), la precipitación (mm³) y el número de días lluviosos anuales. Esta información se obtuvieron de la Estación Hidrológica del Río Yavari (a unos 50 km de Y-M) de la Agencia Nacional de Aguas de Brasil (HidroWeb, Estación Estirão do Repouso, http://www.snirh.gov.br/hidroweb/). La estación hidrológica calcula el promedio mensual de las variables climáticas incluidas en el estudio. Todos los resultados epidemiológicos en los PNH muestreados se asociaron con variables climáticas basadas en el mes y el año de caza.
DOI: 10.15468/dl.swwbjx
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum vaginatum",
 "Country is Papua New Guinea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033804-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.st2jc5
title: Occurrence Download

description: A dataset containing 1520 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum vaginatum",
 "Country is Spain",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1520 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033805-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pj932c
title: Occurrence Download

description: A dataset containing 57729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Corbicula fluminea"
 ]
}

 The dataset includes 57729 records from 329 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033729-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rct3ft
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum vaginatum",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033806-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvc2tp
title: Occurrence Download

description: A dataset containing 6271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Desmognathus conanti"
 ]
}

 The dataset includes 6271 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033807-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5he64k
title: Occurrence Download

description: A dataset containing 199237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arctostaphylos uva-ursi)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 199237 records from 660 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033791-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30247321
title: Bacterial abundance and diversity in rhizosphere and bulk soils of organic and conventional rice cultivation fields

description: The data is on the abundance and diversity of bacterial communities in soils from organic and conventional rice cultivation systems in the rhizosphere and bulk soils. The aim of the study is to identify the bacterial abundance and diversity in the organic and conventional cultivation systems of rhizosphere and bulk soils under upland and lowland rice growth conditions. Soil samples were collected from fields managed under organic and conventional practices to investigate how different cultivation methods influence microbial diversity, genetic composition, and potential functional roles. DNA was extracted from the rhizosphere samples of rice grown in the collected soil inside the pot culture under upland and lowland growth conditions. The bulk soil was collected simultaneously with the rhizosphere sampling. soil microbial communities and subjected to high-throughput sequencing, followed by gene isolation, annotation, and taxonomic classification. The resulting genetic data provide insights into the structure and function of microbial populations under the applied different management systems. This project aims to support sustainable agriculture by identifying microbial genes linked to nutrient cycling, plant growth promotion, and soil health. This study systematically integrates two key agricultural factors of cultivation systems and rice growth water conditions to evaluate their impact on soil microbiomes using high-throughput 16S rRNA gene sequencing. The dataset and accompanying metadata can be used as a reference for future comparative metagenomic studies and for exploring microbial resources that contribute to ecosystem functioning and agricultural productivity.
DOI: 10.6084/m9.figshare.30247321.v1
title: Bacterial abundance and diversity in rhizosphere and bulk soils of organic and conventional rice cultivation fields

description: The data is on the abundance and diversity of bacterial communities in soils from organic and conventional rice cultivation systems in the rhizosphere and bulk soils. The aim of the study is to identify the bacterial abundance and diversity in the organic and conventional cultivation systems of rhizosphere and bulk soils under upland and lowland rice growth conditions. Soil samples were collected from fields managed under organic and conventional practices to investigate how different cultivation methods influence microbial diversity, genetic composition, and potential functional roles. DNA was extracted from the rhizosphere samples of rice grown in the collected soil inside the pot culture under upland and lowland growth conditions. The bulk soil was collected simultaneously with the rhizosphere sampling. soil microbial communities and subjected to high-throughput sequencing, followed by gene isolation, annotation, and taxonomic classification. The resulting genetic data provide insights into the structure and function of microbial populations under the applied different management systems. This project aims to support sustainable agriculture by identifying microbial genes linked to nutrient cycling, plant growth promotion, and soil health. This study systematically integrates two key agricultural factors of cultivation systems and rice growth water conditions to evaluate their impact on soil microbiomes using high-throughput 16S rRNA gene sequencing. The dataset and accompanying metadata can be used as a reference for future comparative metagenomic studies and for exploring microbial resources that contribute to ecosystem functioning and agricultural productivity.
DOI: 10.15468/dl.3vahug
title: Occurrence Download

description: A dataset containing 4461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-100.446 20.689,-100.426 20.689,-100.426 20.708,-100.446 20.708,-100.446 20.689))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 4461 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033811-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.27qx2r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum vaginatum",
 "Country is Tuvalu",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033809-250920141307145/datasets/export for details.
DOI: 10.15468/dl.syn8qs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paspalum vaginatum",
 "Country is Viet Nam",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033810-250920141307145/datasets/export for details.
DOI: 10.5066/p13byqeg
title: Semi-continuous pressure and water quality sensor data from 5 locations in Lower Pool 13 of the Upper Mississippi River from May - September 2024

description: The U.S. Geological Survey Upper Midwest Environmental Sciences Center collected semi-continuous data from water quality and pressure sensors at four shallow locations in the impounded portion of Pool 13 of the Upper Mississippi River and one location upstream near Savanna, IL between late May and early September 2024. This dataset includes high-frequency conductivity, salinity, total dissolved solids, temperature, dissolved oxygen, and turbidity measurements every 5-minutes at five locations, with chlorophyll-a and phycocyanin concentrations being recorded at two of those locations using YSI EXO3 water quality sensors. Pressure data was recorded in bursts every 30-minutes alongside water quality at four locations using RBR virtuoso3 and Nortek Vector sensors to obtain information on local water depth and waves. Due to differing sampling frequencies, data files are grouped by sensor type.

Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.
DOI: 10.15468/dl.8btbd7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendroctonus beckeri"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033813-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpy55a
title: Occurrence Download

description: A dataset containing 26605 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Gesneriaceae"
 ]
}

 The dataset includes 26605 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033814-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13219647
title: SOLANA Price Data Binance API (2020–Now)
DOI: 10.6084/m9.figshare.30247570
title: HRRR 15km Forecasts for wxvx

description: HRRR Forecasts Verified with wxvx<br>This directory contains HRRR forecasts in NetCDF ready to be processed by wxvx. For more information regarding the packages and tools noted here, please see this issue on wxvx and this discussion on wxvx.<br>Preprocessing (Already Done, Noted for Completeness)<br>The netcdf files in the `ncfiles/` directory were created with ufs2arco, using `data.yaml`:<br>```srun ufs2arco data.yaml```<br>Then, these were preprocessed using eagle tools and the config file `obs.prewxvx.yaml````eagle-tools prewxvx obs.prewxvx.yaml```Verification Against Observations<br>The entire workflow is captured inside of `submit_wxvx.sh`.<br>Postprocessing<br>The resulting stat text files produced by MET were postprocessed using `obs.postwxvx.yaml` together with eagle-tools<br>```eagle-tools postwxvx obs.postwxvx.yaml```
DOI: 10.6084/m9.figshare.30247570.v1
title: HRRR 15km Forecasts for wxvx

description: HRRR Forecasts Verified with wxvx<br>This directory contains HRRR forecasts in NetCDF ready to be processed by wxvx. For more information regarding the packages and tools noted here, please see this issue on wxvx and this discussion on wxvx.<br>Preprocessing (Already Done, Noted for Completeness)<br>The netcdf files in the `ncfiles/` directory were created with ufs2arco, using `data.yaml`:<br>```srun ufs2arco data.yaml```<br>Then, these were preprocessed using eagle tools and the config file `obs.prewxvx.yaml````eagle-tools prewxvx obs.prewxvx.yaml```Verification Against Observations<br>The entire workflow is captured inside of `submit_wxvx.sh`.<br>Postprocessing<br>The resulting stat text files produced by MET were postprocessed using `obs.postwxvx.yaml` together with eagle-tools<br>```eagle-tools postwxvx obs.postwxvx.yaml```
DOI: 10.15468/dl.cjpk6w
title: Occurrence Download

description: A dataset containing 1169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Desmognathus brimleyorum"
 ]
}

 The dataset includes 1169 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033817-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.