cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.rj74424/5
title: Supplementary references 61-123_Sachdeva et al
DOI: 10.5061/dryad.tc651j5/1
title: G-03

description: Flowering time data from 2003 study in the greenhouse, performed at the Kellogg Biological Station near Kalamazoo MI.	Populations: 9	Individuals per pop: 22-46 Total individuals in dataset: 306 These are also the parental plants from Sahli et al., (2008.
DOI: 10.5061/dryad.tc651j5/2
title: G-04

description: Flowering time data from 2004 common garden in the greenhouse at Kellogg Biological Station near Kalamazoo MI. Populations: 9	Individuals per population: 58-142	Total individuals in experiment: 877. There are also the offspring from Sahli et al.,  (2008)
DOI: 10.5061/dryad.tc651j5/3
title: F-12

description: Flowering time data from a common garden field experiment in	2012 at the Kellogg Biological Station near Kalamazoo MI. Populations:42, Individuals per population: 7-50, Total number of individuals: 512
DOI: 10.5061/dryad.tc651j5/4
title: F-13

description: Flowering time measurements from 2013 common garden in field at Michigan State University. Populations: 27, individuals per population: 10, Total number of individuals: 270
DOI: 10.5061/dryad.tc651j5/5
title: G1-13

description: Flowering time data from 2013 common garden experiment in greenhouse at Kellogg Biological Station. Populations: 15, individuals per population: 10 Total individuals: 150
DOI: 10.5061/dryad.tc651j5/6
title: G2-13

description: Flowering time measurements from 2013 common garden experiment in the greenhouse at Kellogg Biological Station. Populations: 9, Individuals per population: 14-30, Total individuals: 254
DOI: 10.5061/dryad.v118180/1
title: Dose x Exposure timing experiment for Metschnikowia infection

description: This file contains experimental results underlying figures B6 and B7. NAs in the Spores column are a results of hosts dying too early for mature spores to develop, thus not allowing us to assay infection success.
DOI: 10.5061/dryad.v118180/2
title: Dose x Exposure timing experiment for Pasteuria infection

description: This file contains experimental results underlying figures B6 and B7. NAs in the Spores column are a results of hosts dying too early for mature spores to develop, thus not allowing us to assay infection success.
DOI: 10.5061/dryad.v118180/3
title: Figure 6 code and script

description: This R code contains the simulations to create the data underlying Figure 6. It also contains the code to create figure 6, minus some modifications made in other programs.
DOI: 10.5061/dryad.v118180/4
title: metschnikowia, pateuria, within host priority effects data

description: This data is from our experiment where we measured within host priority effects in daphnia coinfected with Pasteuria and Metschnikowia. The columns have the following meanings. "Treatment"= Treatment number, aligning to Table 1 in the main text. "treatnameM" and "treatnameP" indicate what the treatment was from the view of a focal parasite (e.g., the 1st arrival in coinfection treatment for Pasteuria would be the 2nd arrival in coinfection treatment for metschnikowia). "Replicate" = replicate. "Parasite" indicates whether a row contains Metschnikowia and host fitness data (1) or Pasteuria data (2).  "Count1-4" indicates individual spore counts (4 per replicate). "average" indicates average spore count per replicate. "indowrk" indicates whether metschnikowia or pasteuria inoculations were successful. ""treatwork" indicates whether all inoculations for a replicate were successful. "co" indicates whether a replicate belonged to a coinfection treatment. "stillalive" indicates whether the host was still alive at the end of the experiment. "contaminated" indicates whether a replicate was infected by pathogens it was not exposed to. "Pasteuria" indicates whether the treatment was not exposed to pasteuria (0), singly exposed to pasteuria (1), or exposed to both pathogens (2). "exposed" indicates whether the replicate was exposed to any pathogens. "dissolved" indicates whether the host had partially dissolved after death before we could collect it. "dayslife" indicated days post exposure the host lived. "totbab" indicates total offspring a host had over its lifetime. "lastrepro" Indicates final day of reproduction for the host. The remaining columns indicate the number of offspring found whenever we checked hosts.
DOI: 10.17632/4pxy63cc66.1
title: Data for: Synthesis of poly-o-phenylenediamine (PoPD)/ZnWO4 supported on the fly-ash cenospheres with enhanced photocatalytic performance under visible light
DOI: 10.5061/dryad.04t19/10
title: Slow Flow - narrowgrid, single sample

description: contains ("sample_0" - "sample_8") and correspond to 4 minute epochs of timeseries data.
DOI: 10.5061/dryad.04t19/11
title: Slow Flow - widegrid, single sample

description: contains ("sample_0" - "sample_9") and correspond to 4 minute epochs of timeseries data.
DOI: 10.5061/dryad.04t19/4
title: Fast Flow - narrowgrid, single sample

description: contains ("sample_0" - "sample_9") and correspond to 4 minute epochs of timeseries data.
DOI: 10.5061/dryad.04t19/5
title: Fast Flow - narrowgrid, binaral transversal

description: contains ("sample_L_0" - "sample_L_9") and ("sample_R_0" - "sample_R_9") which correspond to 4 minute epochs at two locations (left and right).
DOI: 10.5061/dryad.04t19/6
title: Fast Flow - narrowgrid, binaral longitudinal

description: contains ("sample_L_0" - "sample_L_9") and ("sample_R_0" - "sample_R_9") which correspond to 4 minute epochs at two locations (left and right).
DOI: 10.5061/dryad.04t19/7
title: Fast Flow - widegrid, single sample

description: contains ("sample_0" - "sample_9") and correspond to 4 minute epochs of timeseries data.
DOI: 10.5061/dryad.04t19/8
title: Fast Flow, widegrid, binaral transversal

description: contains ("sample_L_0" - "sample_L_9") and ("sample_R_0" - "sample_R_9") which correspond to 4 minute epochs at two locations (left and right).
DOI: 10.5061/dryad.04t19/9
title: Fast Flow - widegrid, binaral longitudinal

description: contains ("sample_L_0" - "sample_L_9") and ("sample_R_0" - "sample_R_9") which correspond to 4 minute epochs at two locations (left and right).
DOI: 10.5061/dryad.08f2v80/1
title: 24-h urea-N volatilization data

description: Following the header row, this file contains 100 rows of 24-h ammonia volatilization rate/quantity, corrected for background and collected in the field using flux chambers, following 20 kg/ha foliar application of aqueous urea-N (per conventional or stabilized/amended urea products). HEADERS (row 1): Col 1 is year (data collected), Col 2 is experimental run (EXP RUN). Col 3 is block (nested in EXP RUN). Col 4 is urea fertilizer treatment (TRT). Col 5 is measured kg-N/ha lost. Col 6 is chamber-efficiency-adjusted kg-N/ha lost.
DOI: 10.5061/dryad.176gv58/1
title: Growth and Reproductive Effort of C. xantiana with AMF inoculum

description: This file contains phenotypic measurements from a greenhouse study on effects of AMF inoculum on individuals of Clarkia xantiana ssp. xantiana (Onagraceae) sourced from six populations across the subspecies' range. Variable descriptions are in the README file.
DOI: 10.5061/dryad.176gv58/2
title: Fruit herbivory trials with Clarkia xantiana grown with and without AMF inoculum

description: This file contains results of herbivory trials using grasshoppers (Melanoplus sanguinipes) and fruits of Clarkia xantiana ssp. xantiana (Onagraceae) sourced from six populations across the subspecies' range and either inoculated or not with AMF inoculum. Variable descriptions are in the README file.
DOI: 10.5061/dryad.18j6s77/1
title: Global parasitic helminths – mammalian hosts association records

description: This data file contains association records of focal parasitic worm species (helminths) in different mammalian host species compiled from the publicly available Host-Parasite Database (http://www.nhm.ac.uk/research-curation/scientific-resources/taxonomy-systematics/host-parasites/) of the Natural History Museum (NHM), London (Gibson et al., 2005). Data extraction and revision is described in Wells et al. (2018). Location names were standardised to country names of the current world geopolitical map and assigned to one of 11 zoogeographical regions according to Holt et al. (2013). Unique host-parasite-country records are given for nine focal parasite species: Calodium hepaticum (Nematoda), Echinococcus granulosus (Cestoda), Echinococcus multilocularis (Cestoda), Hydatigera taeniaeformis (Cestoda), Hymenolepis diminuta (Cestoda), Mesocestoides lineatus (Cestoda), Taenia hydatigena (Cestoda), Trichinella spiralis (Nematoda) and Versteria mustelae (Cestoda). For records of non-focal parasitic helminth species in different host species and locations, binomial species names have been replaced with “0” to represent the full range mammal species with records of any parasitic helminth species (i.e. potential host species pools).  
Column titles refer to the following content for serial records of host-parasite associations:
Host.Species – Binomial name of mammalian host species for which an association has been recorded.
Host.Order – Taxonomic order of host species.
Parasite.Species - Binomial name of parasitic helminth species (nine focal species) for which an association has been recorded. Records of non-focal parasitic helminth species are indicated with “0”, including all records of mammalian host species in the original database in which the focal parasites were not recorded.  
Parasite.Taxa – Taxonomic classification of parasitic helminth species.
Location.Name – Name of the location of association record according to original database.
Country – Country name matching the location name of association record according to contemporary world geopolitical map.
Zoogeogr.Region – Zoogeographical region matching the location name of association record according to Holt et al. (2013).


References:
Gibson, D. I. et al.(Compilers) (2005). Host-Parasite Database of the Natural History Museum, London. http://www.nhm.ac.uk/research-curation/scientific-resources/taxonomy-systematics/host-parasites/index.html;
Holt, B. G. et al. 2013. An update of Wallace’s zoogeographic regions of the world. — Science 339: 74-78. doi:10.1126/science.1228282;
Wells, K. et al. (2018). Global spread of helminth parasites at the human – domestic animal – wildlife interface. — Global Change Biology 24: 3254-3265. doi:10.1111/gcb.14064;
DOI: 10.5061/dryad.42nk23k/1
title: Hector's and Maui's dolphin MHC and microsatellite genotyping data

description: The file contains MHC genotyping data from SSCP and microsatellite data for 162 individual Hector's and Maui's dolphins from New Zealand. The individuals are from two subspecies and two populations of the Hector's dolphins.
DOI: 10.5061/dryad.4j4t81p/1
title: small rodent snap trapping and elevation data

description: There is one .csv file for each species (lemmings and gray-sided vole) for each peak. Trapping number for each of the three season included in one peak are separated into different columns while each row represent a trapping site. there is also one .csv file giving elevations for the different sites for each of the two peaks, where elevation has been standardized to a mean of 0 and a sd of 1.
DOI: 10.5061/dryad.6447n78/10
title: Herron_RNA-Seq_DiffExp_03h

description: Genes that are significantly differentially expressed at 3 hours post-inoculation.
DOI: 10.5061/dryad.6447n78/11
title: Herron_RNA-Seq_DiffExp_06h

description: Genes that are significantly differentially expressed at 6 hours post-inoculation.
DOI: 10.5061/dryad.6447n78/12
title: Herron_RNA-Seq_DiffExp_09h

description: Genes that are significantly differentially expressed at 9 hours post-inoculation.
DOI: 10.5061/dryad.6447n78/13
title: Herron_RNA-Seq_DiffExp_12h

description: Genes that are significantly differentially expressed at 12 hours post-inoculation.
DOI: 10.5061/dryad.6447n78/14
title: Herron_RNA-Seq_DiffExp_48h

description: Genes that are significantly differentially expressed at 48 hours post-inoculation.
DOI: 10.5061/dryad.6447n78/15
title: Herron_biological_functions_genome

description: Lists biological functions of genes in the Chlamydomonas reinhardtii reference genome v5.5.
DOI: 10.5061/dryad.6447n78/9
title: Herron_phylostrata_code

description: Python code used to perform the phylostratigraphy analysis.
DOI: 10.5061/dryad.675t34s/1
title: 181008_data_wj
DOI: 10.5061/dryad.8p165g9/1
title: ToadAgeReduce
DOI: 10.5061/dryad.8p165g9/10
title: summaryfemaletoads
DOI: 10.5061/dryad.8p165g9/11
title: ToadAgeReduce
DOI: 10.5061/dryad.8p165g9/12
title: FrogAgeReduce
DOI: 10.5061/dryad.8p165g9/5
title: Maleswoodage
DOI: 10.5061/dryad.8p165g9/6
title: femaleswoodage
DOI: 10.5061/dryad.8p165g9/7
title: summarymalewood
DOI: 10.5061/dryad.8p165g9/8
title: summarymaletoad
DOI: 10.5061/dryad.8p165g9/9
title: summaryfemalewood
DOI: 10.5061/dryad.8s444dr/2
title: alpinus_data_ecolapp_dryad

description: Tamias alpinus glucocorticoid data and associated biological and environmental data collected 2013-2015 in Yosemite National Park and surrounding areas.
DOI: 10.5061/dryad.9s364g3/1
title: Ossification data

description: This file has the average body mass and ossification data for 96 species of hummingbirds collected from museum specimens
DOI: 10.5061/dryad.9s364g3/2
title: Hummingbird skull morphology data

description: This file has the average values of 6 morphological traits for 32 species of hummingbirds collected from museum specimens
DOI: 10.5061/dryad.cp38vj4/1
title: Raw data Fabian & Garschall et al. 2018

description: Data associated with Fabian and Garschall et al. (2018), "Evolution of Longevity Improves Immunity in Drosophila", published in Evolution Letters. This file contains raw data for infection assays of long-lived selected and unselected control populations of Drosophila melanogaster and data on lifespan upon RNAi knockdown of immunity genes. For details see Fabian & Garschall et al. (2018).

Sheet Infection Gene Expression: qRT-PCR average Ct values of 3 technical replicates, 24h after infection with E. carotovora carotovora 15, prick control and unchallenged pools of 5 female flies (per biological replicate).

Sheet Infection Survival: Age at death (days) of females upon pathogen infection with B. bassiana, E. faecalis, E. carotovora carotovora 15 and Drosophila C Virus (DCV), with survival data right-censored after 14, 7, 7, and 7 days post infection, respectively.

Sheet Bacterial Clearance: Total absence of bacterial growth (= total. 100% clearance) in both of two replicate spots of homogenate of a single female fly after infection with E. carotovora carotovora 15. 

Sheet Lifespan RNAi: Age at death (days) of da-GS-GAl4&gt;UAS-RNAi flies, targeting different immunity genes in the Toll pathway (RU486 = mifepristone = RNAi; EtOH = non-RNAi control). Data from F1 offspring of the control cross without RNAi knockdown are denoted as "w1118 x da-GS-Gal4".
DOI: 10.5061/dryad.dc28m/1
title: Zinger_et_al_metabar_PP1_Archaea.uniq.fasta

description: This gz contains a fasta file of pre-filtered sequencing data (i.e. assembled and dereplicated reads assigned to their original sample), corresponding to amplicons of soil archaea.
DOI: 10.5061/dryad.ds6p94f/1
title: Date-Heterogeneous and efficient transesterification of Jatropha curcas L. seed oil
DOI: 10.5061/dryad.f0s23r8/36
title: Donor 1 - Bw6

description: fcs files for ABC donor 1
DOI: 10.5061/dryad.f0s23r8/37
title: Donor 9 - Bw6

description: fcs files for ABC donor 9
DOI: 10.5061/dryad.f0s23r8/38
title: Donor 17 - Bw6

description: fcs files for ABC donor 17
DOI: 10.5061/dryad.f0s23r8/39
title: Donor 24 -Bw6

description: fcs files for ABC donor 24
DOI: 10.5061/dryad.f0s23r8/40
title: Donor 26 - Bw6

description: fcs files for ABC donor 26
DOI: 10.5061/dryad.f0s23r8/41
title: Donor 31 - Bw6

description: fcs files for ABC donor 31
DOI: 10.5061/dryad.f0s23r8/42
title: Donor 34 - Bw6

description: fcs files for ABC donor 34
DOI: 10.5061/dryad.f0s23r8/43
title: Donor 35 - Bw6

description: fcs files for ABC donor 35
DOI: 10.5061/dryad.f0s23r8/44
title: Donor 55 - Bw6
DOI: 10.5061/dryad.f0s23r8/49
title: Donor 57 - Bw6

description: fcs files for ABC donor 57
DOI: 10.5061/dryad.f4g56/2
title: Tree Files

description: Phylogenetic tree files obtained from RAxML and SVDquartets in .tre format. Newick tree for IPYsh4snp used for supplemental locus sharing plots.
DOI: 10.5061/dryad.f4g56/3
title: CRB ggplots2 R Script - Coverage Plots

description: R script documenting packages and code used to generate coverage plots used to summarize data used in this report.
DOI: 10.5061/dryad.f4g56/4
title: CRB pophelper R Script - Structure bar plots

description: R script documenting packages and code used to generate bar plots for visualizing Structure and fastStructure analyses performed in this report.
DOI: 10.5061/dryad.f4g56/5
title: CRB RADami R Script - Locus Sharing Plots

description: R script documenting packages and code used to generate locus sharing plots from IPYRAD loci data generated for this report.
DOI: 10.5061/dryad.f4g56/6
title: CRB SNPrelate R Script - PCA

description: R script documenting packages and code used to conduct a principle component analysis on Stacks SNP data in VCF format.
DOI: 10.5061/dryad.f4g56/7
title: CRB Undefined Removal R Script

description: R script documenting the packages and steps taken to remove potentially potentially undefined sites from data matrices used in RAxML. Ascertainment Bias corrections require that potentially undefined sites due to missing data or uncertainty are removed.
DOI: 10.5061/dryad.fj7cc64/3
title: Supplemental File 3 = Character matrix

description: Nexus file of the character matrix used in the phylogenetic analysis.
DOI: 10.5061/dryad.m8m6142/1
title: STRUCTURE output from 277 bats (Fig_S10)

description: Output data of STRUCTURE analyses performed using nuclear microsatellite data from 277 E. gambianus
DOI: 10.5061/dryad.m8m6142/2
title: Alingments

description: Mitochondrial DNA alignments (.nex and .fasta) of CYTB, DLOOP and Concatenated fragments used in this manuscript
DOI: 10.5061/dryad.m8m6142/3
title: nuclear microsatellites

description: Nuclear microsatellites RAW data (.fsa)
DOI: 10.5061/dryad.q08mn53/1
title: census of 3rd-year (2012) experimental prairie plant communities

description: Data file contains full censuses for 72 plots (1m x 1m) at each of 3 experimental sites in Minnesota, USA. Each plot was established in 2010 by sowing a standard restoration mix of grasses, forbs and legumes; each plot was then oversown with 1 of 12 strains of switchgrass (Panicum virgatum). Of the 12 strains, 6 were selectively-bred cultivars and 6 were undomesticated populations. The censuses were conducted at the end of the 3rd growing season, in 2012. See corresponding article (Flint, Jordan, Shaw) for details
DOI: 10.5061/dryad.q08mn53/2
title: Comm_Biomass2012

description: 3rd-year aboveground biomass values for experimental prairie plots that hosted either 1 of 6 switchgrass cultivars or 1 of 6 undomesticated switchgrass strains. Half of the replicate plots were harvested; the unharvested plots are indicated by having all "0" values.
DOI: 10.5061/dryad.q08mn53/3
title: SwitchAbundEstabPersist_10_11_12

description: Data of switchgrass censuses conducted in 1st, 2nd, and 3rd years of experiment (2010, 2011, 2012; see Flint, Jordan & Shaw for details), at 4 evaluation sites in Minnesota USA. Switchgrass strains were either selectively bred cultivars (n=6) or undomesticated populations (n=6). See Flint, Jordan & Shaw for details on each of the 12 strains. Each experimental plot measured 1m x 1m and also contained an experimental prairie plant community established from a standard restoration seed mix containing grasses, forbs & legumes.
DOI: 10.5061/dryad.q18d9k6/1
title: ReadMe
DOI: 10.5061/dryad.q18d9k6/2
title: experiment 1 - analysis

description: see ReadMe
DOI: 10.5061/dryad.q18d9k6/3
title: experiment 1 - data

description: see ReadMe
DOI: 10.5061/dryad.q18d9k6/4
title: experiment 2 - analysis

description: see ReadMe
DOI: 10.5061/dryad.q18d9k6/5
title: experiment 2 - data

description: see ReadMe
DOI: 10.5061/dryad.qb35fd8/1
title: Rosin_SeedSwap_AllData

description: All data from the project, with each row representing a single seed, and columns representing the conditions under which that seed was placed (density, canopy location, treatment type), as well as its fate.  Species identifier codes use the first two letters of the genus and the first two letters of the specific epithet.
DOI: 10.5061/dryad.rt7f0b0/1
title: Zebrafish data transfer

description: Examples were included to demonstrate how to load the data files
DOI: 10.5061/dryad.rt7f0b0/2
title: Raw data from the neurotoxicity assay

description: The distance moved (mm) per min data
DOI: 10.5061/dryad.rt7f0b0/3
title: Endpoint data from developmental toxicity assay

description: The endpoints include percent_affected, percent_malformed, n_dead per well, n_malformed per well
DOI: 10.5061/dryad.rt7f0b0/4
title: Endpoint (quantity type) data from the neurotoxicity assay

description: Endpoints include L1_distmoved, D1_distmoved, L2_distmoved, , and D2_distmoved. Responses include both normalized and non-normalized.
DOI: 10.5061/dryad.rt7f0b0/5
title: Endpoint (similarity type) data from neurotoxicity assay

description: Endpoints include LD_similarity(cosine),   LD_correlation(pearson), and LD_correlation(spearman). Responses include normalized and non-normalized
DOI: 10.5061/dryad.tc651j5/7
title: F-05

description: Flowering time measurements from 2005 common garden experiment in the field at Kellogg Biological Station. Populations: 6, Individuals per population: 64-88, total individuals: 442.	These are also the offspring from Sahli et al.,  (2008)
DOI: 10.5061/dryad.tc651j5/8
title: G-10

description: Flowering time data from 2010 common garden experiment in the greenhouse at Kellogg Biological Station. Populations: 4, Individuals per population: 8-22, Total individuals: 55
DOI: 10.5061/dryad.tc651j5/9
title: WeedEvo

description: All the data files and metadata files required to replicate the results of this paper. Scripts and readme are available on github https://github.com/ACharbonneau/creepy-barnacle
DOI: 10.5061/dryad.v118180/5
title: Code for Figure 4

description: This R script runs the simulation to create the data underlying figures 4 and 5. It also creates figure 4, minus some modifications made in other programs.
DOI: 10.5061/dryad.v118180/6
title: Analytic coexistence analysis

description: This code runs the simulation to create the data underlying figure B8.
DOI: 10.5061/dryad.vf807sd/1
title: Individual female damselfly data

description: Data associated with individual female damselfly specimens. Measurement methods are described in the accompanying paper. Units of measurement are included in column headings.
DOI: 10.5061/dryad.vf807sd/2
title: Population means

description: Mean trait values for each damselfly population, calculated from individual data in "IndividualFemaleData.txt." Measurement methods are described in the accompanying paper. Units of measurement are included in column headings. When a population only included one sample, this value was used as the population mean.
DOI: 10.5061/dryad.vf807sd/3
title: Sensilla and plate outline coordinates

description: X and y coordinates describing locations of sensilla and perimeter of mesostigmal plate.
DOI: 10.17632/b8fy9zw2vy.1
title: Data for: Differential effects of postoperative oral corticosteroid on eosinophilic vs. non-eosinophilic CRSwNP subtypes.

description: Raw data of this study of postoperative oral corticosteroid on eosinophilic vs. non-eosinophilic CRSwNP subtypes
DOI: 10.17632/kt242pjkm2.1
title: Data for: Tilted Nanocaps: Remanence, Quasistatic and Dynamic Switching

description: Microwave assisted reversal of a nanocap.
DOI: 10.5061/dryad.04t19/12
title: Slow Flow - narrowgrid, binaral longitudinal

description: contains ("sample_L_0" - "sample_L_8") and ("sample_R_0" - "sample_R_8") which correspond to 4 minute epochs at two locations (left and right).