cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/k7fnj5ks6n.2
title: Baobab Detection and Analysis to Evaluate Anthropogenic Legacies in Eastern Africa

description: This data is related to a paper which evaluated different methods for detecting baobab trees in drone imagery, with the aim of comparing them to archaeological sites in eastern Africa.

This dataset contains:

1. An ArcGIS Pro geodatabase, with a shapefile of hand-digitized baobab locations for Unguja Island, shapefile data of archaeological sites, shapefiles of settlement data digitized from a 1907 map of the island, squares showing seasonal data for the ZMI imagery, and an outline of the island created from SRTM elevation data, shapefiles and rasters of the automated detection training and testing files, and the results of automated detection using the Max Likelihood classifier, sorted by circularity and pixel size.
2. Excel files showing the nearness analysis for baobab trees, with the raw data and tables available
3. Excel files with confusion matrices for the automated detection in different seasons
4. Python code used for the tree detection viewer
5. A ReadMe file with all workflows described in detail
DOI: 10.15468/dl.7sfdk6
title: Occurrence Download

description: A dataset listing the 579 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-74.08372 4.85578,-74.0726 4.8288,-74.01436 4.88119,-74.06405 4.89951,-74.08372 4.85578))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 579 records were derived from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020354-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/stv6kz537k.1
title: TIME OPTIMIZATION IN PRODUCTION LINE USING LEAN TOOL

description: This case study objective is to reduce changeover minutes in electrical accessories production line using SMED technique- A lean tool. SMED denotes principles, methodologies employed to minimize equipment setup durations. SMED aims to achieve setup times of under ten minutes, specifically a single-digit number of minutes. More internal setup and changeover time. Impacted stake holders in the organization due to the above challenges are Production, Logistics, Finance and Supply chain sectors.
DOI: 10.17632/hr56w6953m.1
title: Arboline Amazonian Seedlings

description: The data were collected during experiment with Amazonian tree species (Bertholletia excelsa, Carapa vasquezii, Hevea brasiliensis) in control and treatment groups. Treatments were carbon nanoparticles applications on seedlings substrate, 5 ml of arboline in 400mg/ml were applied once a week during one month. The completely random double factorial (3x2) were tested for normality and variances homogeneity and non-parametric distribution was predominant. Biometric measures were collected in the beggining and in the end of growth period, from march to june. Morphoanatomy leaf traits collected in the end of growth period, together with biochemical contents. Gases exchanges were collected during the first month, while nanoparticles treatment was performed. Spearman's correlation and false discovery rate at 99% significant level are available in separate tables. Also, R' script for provided statistical analyses are provided.
DOI: 10.17632/hr56w6953m.2
title: Amazonian tree seedlings stimulated by carbon nanoparticles

description: The data were collected during experiment with Amazonian tree species (Bertholletia excelsa, Carapa vasquezii, Hevea brasiliensis) in control and treatment groups. Treatments were carbon nanoparticles applications on seedlings substrate, 5 ml of arboline in 400mg/ml were applied once a week during one month. The completely random double factorial (3x2) were tested for normality and variances homogeneity and non-parametric distribution was predominant. Biometric measures were collected in the beggining and in the end of growth period, from march to june. Morphoanatomy leaf traits collected in the end of growth period, together with biochemical contents. Gases exchanges were collected during the first month, while nanoparticles treatment was performed. Spearman's correlation and false discovery rate at 99% significant level are available in separate tables. Also, R' script for provided statistical analyses are provided.
DOI: 10.17632/jbyp656nvt.1
title: KINESIOPHOBIA, PAIN INTENSITY, PERFORMANCE IN FUNCTIONAL TESTS AND PHYSICAL ACTIVITY IN PEOPLE IN THE CHRONIC PHASE OF CHIKUNGUNYA

description: The presente database was the basis for writing the article entitled “Correlation between kinesiophobia, pain intensity, performance in functional tests and physical activity in people in the chronic phase of chikungunya: a cross-sectional study”, which aimed to investigate the correlation between kinesiophobia, pain intensity, performance in functional tests and frequency and time of physical activity in people in the chronic phase of Chikungunya. This is a cross-sectional study, which included 74 individuals aged between 18 and 75, of both sexes. A sociodemographic questionnaire, the Tampa Scale for Kinesiophobia and the Numerical Pain Scale (NPS) were used to collect data. In addition, the following functional tests were carried out: sitting and getting up from a chair in 30 seconds, Time up and Go Test (TUG), going up and down 8 steps and a 40-meter brisk walk. The Shapiro-Wilk test showed that the data was not normal. Spearman's correlation test was then used, with a significance level of 5%.
DOI: 10.17632/jj646kz5tw.1
title: Supplementary data to: Impact of Spatial Aggregation on Global Renewable Energy System with ETHOS.modelBuilder

description: Background data for all figures in the publication: Impact of Spatial Aggregation on Global Renewable Energy System with ETHOS.modelBuilder
DOI: 10.17632/xhhrcghjgp.1
title: LINF_160016900

description: tyrosyl or methionyl-tRNA synthetase-like protein Leishmania infantum (strain JPCM5)
DOI: 10.17632/xhhrcghjgp.2
title: LINF_160016900

description: Tyrosyl or methionyl-tRNA synthetase-like protein | EMAP-1; Leishmania infantum (strain JPCM5)
DOI: 10.17632/8nd5hdc3md.1
title: Vostok: A New Looping Factor for the Organization of the Regulatory Genome in the Drosophila Brain. Hu et al.

description: 1) Western-blot using larval brains of yw control line or ΔVostok mutants. The membrane #2 was hybridized with Vostok antibodies (Vostok Western-blot - yw and Vostok-mutants - larvae brains 7-3-25.tif). To control the amount of material, the same membrane used for hybridization with Vostok was hybridized with CP190 antibodies (CP190 Western-blot - yw and Vostok-mutants - larvae brains 7-3-25.tif)
DOI: 10.17632/7n97zfd63f.1
title: Global-local system

description: Data of thhree diffrent tasks after priming of global vs. local procssing. In all files group reprsnt the priming condition of the participant global or local. The code file shwos the anlysis we did in all files. The file "Demo+STAI+CAARS reprsnt the dmografic and the clincal carcrtictic of the sample. the file GLTT represnt their promorfmenc in a global local tendency task. the file "Rorschach" reprsnt their responses in the Rorschach inkbolt task. the file "melodic global-local task" presnt their promofrmenc in a task with simler name. As can be seen in the code we find that global vs. local priming had sgnificent impect on the perfomrnce on all of this tasks.
DOI: 10.17632/7n97zfd63f.2
title: Global-local system

description: Data of thhree diffrent tasks after priming of global vs. local procssing. In all files group reprsnt the priming condition of the participant global or local. The code file shwos the anlysis we did in all files. The file "Demo+STAI+CAARS reprsnt the dmografic and the clincal carcrtictic of the sample. the file GLTT represnt their promorfmenc in a global local tendency task. the file "Rorschach" reprsnt their responses in the Rorschach inkbolt task. the file "melodic global-local task" presnt their promofrmenc in a task with simler name. As can be seen in the code we find that global vs. local priming had sgnificent impect on the perfomrnce on all of this tasks.
DOI: 10.17632/f2h22rhdwk
title: Cell of origin alters myeloid immunoreactive states in the lung adenocarcinoma microenvironment

description: The study aims to investigate how the cellular origin of lung adenocarcinoma (LUAD), specifically whether it arises from alveolar type I (AT1) or alveolar type II (AT2) cells, influences the tumor immune microenvironment (TIME), immune cell composition, and metastatic potential. The hypothesis is that AT1- and AT2-derived LUADs exhibit distinct immune landscapes and functional pathways, impacting tumor progression and therapeutic response. 

Data Description
Supplemental File 1: Myeloid_Annotated.RDS (and .zip)
Description: Annotated single-nucleus RNA sequencing (snRNA-seq) data focused on myeloid cells from AT1- and AT2-derived LUAD samples.
Supplemental File 2: R code for snRNA-seq analyses (R file and .zip)
Description: R scripts for preprocessing, clustering, and differential expression analysis of snRNA-seq data.
Supplemental File 3: Trajectory analysis (ipynb and .zip)
Description: Jupyter notebooks for trajectory inference to trace cell differentiation paths and lineage relationships.
Supplemental Files 4-5: CCCObj_in_AT1LUAD.RDS/.zip and CCCObj_in_AT2LUAD.RDS/.zip
Description: Cell-cell communication (CCC) analysis objects for AT1- and AT2-derived LUAD, respectively.
Supplemental File 6: CCC_analysis via LIANA.Rmd and .zip
Description: LIANA analysis scripts for cell-cell communication using snRNA-seq data.
Supplemental File 7: STSeq_LUAD_xzcompressed.Rds
Description: Spatial transcriptomics (ST) data for LUAD samples, capturing gene expression with spatial context.
Supplemental File 8: TIME Visium Analysis (R file and .zip)
Description: R scripts for Visium spatial transcriptomics analysis, including data normalization and spatial clustering.

Supplemental Tables
Supplemental Table 1: Overall Cell Composition (.pdf and .xlsx)
Description: Quantitative breakdown of overall cell populations within LUAD samples.
Supplemental Table 2: Myeloid Cell Composition (.pdf and .xlsx)
Description: Detailed cell-type composition focusing specifically on myeloid populations.
Supplemental Table 3: Myeloid Cell Composition per Mouse ID (.pdf and .xlsx)
Description: Myeloid cell counts stratified by individual mouse IDs, providing insights into sample variability.
Supplemental Table 4: FDR-Corrected MP DEGs_AT1 vs. AT2 (.pdf)
Description: Differentially expressed genes (DEGs) between AT1- and AT2-derived LUAD, corrected for false discovery rate (FDR).
Supplemental Table 5: PANTHER Pathways for MP DEGs_AT1 vs. AT2 (.pdf and .xlsx)
Description: Pathway analysis results for DEGs, highlighting enriched biological processes and signaling pathways.


Notable Findings and Key Insights
AT1-derived LUAD exhibits a more immunoreactive TIME, with increased T cell infiltration and reduced immunosuppressive MDSCs, compared to AT2-derived LUAD.
Spatial transcriptomics reveals distinct localization patterns of immune cells, suggesting differential immune cell recruitment based on tumor cell origin.
DOI: 10.17632/f2h22rhdwk.1
title: Cell of origin alters myeloid immunoreactive states in the lung adenocarcinoma microenvironment

description: The study aims to investigate how the cellular origin of lung adenocarcinoma (LUAD), specifically whether it arises from alveolar type I (AT1) or alveolar type II (AT2) cells, influences the tumor immune microenvironment (TIME), immune cell composition, and metastatic potential. The hypothesis is that AT1- and AT2-derived LUADs exhibit distinct immune landscapes and functional pathways, impacting tumor progression and therapeutic response. 

Data Description
Supplemental File 1: Myeloid_Annotated.RDS (and .zip)
Description: Annotated single-nucleus RNA sequencing (snRNA-seq) data focused on myeloid cells from AT1- and AT2-derived LUAD samples.
Supplemental File 2: R code for snRNA-seq analyses (R file and .zip)
Description: R scripts for preprocessing, clustering, and differential expression analysis of snRNA-seq data.
Supplemental File 3: Trajectory analysis (ipynb and .zip)
Description: Jupyter notebooks for trajectory inference to trace cell differentiation paths and lineage relationships.
Supplemental Files 4-5: CCCObj_in_AT1LUAD.RDS/.zip and CCCObj_in_AT2LUAD.RDS/.zip
Description: Cell-cell communication (CCC) analysis objects for AT1- and AT2-derived LUAD, respectively.
Supplemental File 6: CCC_analysis via LIANA.Rmd and .zip
Description: LIANA analysis scripts for cell-cell communication using snRNA-seq data.
Supplemental File 7: STSeq_LUAD_xzcompressed.Rds
Description: Spatial transcriptomics (ST) data for LUAD samples, capturing gene expression with spatial context.
Supplemental File 8: TIME Visium Analysis (R file and .zip)
Description: R scripts for Visium spatial transcriptomics analysis, including data normalization and spatial clustering.

Supplemental Tables
Supplemental Table 1: Overall Cell Composition (.pdf and .xlsx)
Description: Quantitative breakdown of overall cell populations within LUAD samples.
Supplemental Table 2: Myeloid Cell Composition (.pdf and .xlsx)
Description: Detailed cell-type composition focusing specifically on myeloid populations.
Supplemental Table 3: Myeloid Cell Composition per Mouse ID (.pdf and .xlsx)
Description: Myeloid cell counts stratified by individual mouse IDs, providing insights into sample variability.
Supplemental Table 4: FDR-Corrected MP DEGs_AT1 vs. AT2 (.pdf)
Description: Differentially expressed genes (DEGs) between AT1- and AT2-derived LUAD, corrected for false discovery rate (FDR).
Supplemental Table 5: PANTHER Pathways for MP DEGs_AT1 vs. AT2 (.pdf and .xlsx)
Description: Pathway analysis results for DEGs, highlighting enriched biological processes and signaling pathways.


Notable Findings and Key Insights
AT1-derived LUAD exhibits a more immunoreactive TIME, with increased T cell infiltration and reduced immunosuppressive MDSCs, compared to AT2-derived LUAD.
Spatial transcriptomics reveals distinct localization patterns of immune cells, suggesting differential immune cell recruitment based on tumor cell origin.
DOI: 10.17632/26n94845f7
title: Vitamins, Dex and GBM

description: Background. The Stupp protocol is the standard of care for GBM. We explore the impacts of vitamin supplements and Dexamethasone dosages on GBM patient outcomes. 
Methods. We screened electronic medical records to identify 173 GBM patients whose tumors met the 2021 WHO criteria and who received standard of care. 99 patients were Stupp protocol compliant, finishing 6-cycles of adjuvant temozolomide; 74 failed the protocol by receiving &lt;6-cycles. 
Results. Vitamin D supplements are a powerful therapeutic treatment adjunct for GBM patients and markedly improve progression free survival (PFS) and overall survival (OS). There is an inverse relationship between vitamin D supplementation and Dexamethasone usage. Vitamin D supplements increase PFS and OS, p&lt;0.0001, and facilitate lower Dexamethasone dosages, p&lt;0.0001. In addition, Stupp-compliance is 50% higher in patients taking vitamin D, p&lt;0.001, independent of socioeconomic status. Vitamin D supplements also improve outcomes in those aged 61 or older, who in many studies have worse outcomes. 
Dexamethasone usage shows a dose dependent negative impact on patient outcome at key steps in treatment. We find that using &lt;1.2 mg/m2 Dexamethasone in the final week of chemoradiotherapy improves both PFS and OS. In addition, patients under this threshold were ≈50% more likely to become Stupp-compliant, p&lt;0.003. If Dexamethasone levels are &lt;1.2 mg/m2 at the start of adjuvant temozolomide chemotherapy, Stupp-compliance doubles, p&lt;0.0001, and patients enjoy a two-fold improvement in OS, p&lt;0.0001. 
Conclusions. The use of Vitamin D supplementation allows for lower Dexamethasone dosage and is associated with significant improvement in PFS and OS.
DOI: 10.17632/26n94845f7.1
title: Vitamins, Dex and GBM

description: Background. The Stupp protocol is the standard of care for GBM. We explore the impacts of vitamin supplements and Dexamethasone dosages on GBM patient outcomes. 
Methods. We screened electronic medical records to identify 173 GBM patients whose tumors met the 2021 WHO criteria and who received standard of care. 99 patients were Stupp protocol compliant, finishing 6-cycles of adjuvant temozolomide; 74 failed the protocol by receiving &lt;6-cycles. 
Results. Vitamin D supplements are a powerful therapeutic treatment adjunct for GBM patients and markedly improve progression free survival (PFS) and overall survival (OS). There is an inverse relationship between vitamin D supplementation and Dexamethasone usage. Vitamin D supplements increase PFS and OS, p&lt;0.0001, and facilitate lower Dexamethasone dosages, p&lt;0.0001. In addition, Stupp-compliance is 50% higher in patients taking vitamin D, p&lt;0.001, independent of socioeconomic status. Vitamin D supplements also improve outcomes in those aged 61 or older, who in many studies have worse outcomes. 
Dexamethasone usage shows a dose dependent negative impact on patient outcome at key steps in treatment. We find that using &lt;1.2 mg/m2 Dexamethasone in the final week of chemoradiotherapy improves both PFS and OS. In addition, patients under this threshold were ≈50% more likely to become Stupp-compliant, p&lt;0.003. If Dexamethasone levels are &lt;1.2 mg/m2 at the start of adjuvant temozolomide chemotherapy, Stupp-compliance doubles, p&lt;0.0001, and patients enjoy a two-fold improvement in OS, p&lt;0.0001. 
Conclusions. The use of Vitamin D supplementation allows for lower Dexamethasone dosage and is associated with significant improvement in PFS and OS.
DOI: 10.17632/jnjdth4pg2
title: Mo isotope study of Schistes Lustres

description: Bulk rock Mo isotope data along with in situ mineral data for Schistes Lustres and Lago di Cignana eclogite facies metasedimentary rocks of western Alps
DOI: 10.17632/jnjdth4pg2.1
title: Mo isotope study of Schistes Lustres

description: Bulk rock Mo isotope data along with in situ mineral data for Schistes Lustres and Lago di Cignana eclogite facies metasedimentary rocks of western Alps
DOI: 10.17632/xbvfcpktg5
title: Supplemental Material for Immunotherapy-induced Acute Generalized Pustulosis: A Scoping Review

description: This is the supplementary materials associated with the JAAD Reviews article "Immunotherapy-induced Acute Generalized Pustulosis: A Scoping Review"
DOI: 10.17632/xbvfcpktg5.1
title: Supplemental Material for Immunotherapy-induced Acute Generalized Pustulosis: A Scoping Review

description: This is the supplementary materials associated with the JAAD Reviews article "Immunotherapy-induced Acute Generalized Pustulosis: A Scoping Review"
DOI: 10.17632/fgznhm4wb4.1
title: Modeling the Integration of Ethics, Social Responsibility, and Sustainability in University Contexts: a case study

description: The file (DataR_EFA.txt) corresponds to the data for an exploratory factor analysis (first round). The data are the responses to a Likert-type questionnaire related to the construct of ERS. The file (DataR.txt) corresponds to the data considered for the EFA and CFA. The two data sets are the same but with the columns relabeled according to the EFA results. The .R extension files are the files with the instructions to obtain the AFE results and the SEM models mentioned in the manuscript. The Informed Consent and the Ethics Committee Approval are included as Supplementary Material in the original language (Spanish) and its translation into English.
DOI: 10.15468/dl.m9wc6p
title: Occurrence Download

description: A dataset containing 232423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachythecium rutabulum (Hedw.) Schimp.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 232423 records from 604 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020356-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ksgd75d8br.1
title: BP_CV_Supplementary_Materials

description: BP CV Supplementary Materials
DOI: 10.17632/dx2kd2jvsk.1
title: Deep representation learning of electrocardiogram reveals novel insights in cardiac structure and functions and connections to cardiovascular diseases 2

description: Summary statistics of the deep representations of 12-lead ECG of &gt;40,000 UK Biobank participants with heart rate included as a covariate. This dataset includes latent factor 1-30.
Link to heart rate adjusted GWAS on the latent factors31-32 - doi: 10.17632/fptzwjk6x9.1
DOI: 10.17632/fptzwjk6x9.1
title: Deep representation learning of electrocardiogram reveals novel insights in cardiac structure and functions and connections to cardiovascular diseases - heart rate adjusted 2

description: Summary statistics of the deep representations of 12-lead ECG of &gt;40,000 UK Biobank participants with heart rate included as a covariate. This dataset includes latent factor 31-32. 
Link to data for latent factor 1-30 DOI: 10.17632/dx2kd2jvsk.1
DOI: 10.17632/mb6by464n6.1
title: Data Set for Experimental evaluation of fluid-to-fluid scaling models for deteriorated heat transfer at supercritical pressures (carbon dioxide and Refrigerant R134a)

description: This is the data captured and used for the results showcased in the paper titled "Experimental evaluation of fluid-to-fluid scaling models for deteriorated heat transfer at supercritical pressures (carbon dioxide and Refrigerant R134a)", submitted to Nuclear Engineering and Design.
DOI: 10.17632/hs467zj2cw.1
title: Human genetic variation reveals FCRL3 is a lymphocyte receptor for Yersinia pestis. Keener et al.

description: These data accompany the manuscript "Human genetic variation reveals FCRL3 is a lymphocyte receptor for Yersinia pestis." Yersinia pestis is the bacterium responsible for plague, one of the deadliest diseases in history. To discover human genetic determinants of Y. pestis infection, we utilized nearly a thousand genetically diverse lymphoblastoid cell lines in a cellular genome-wide association study. A nonsynonymous SNP, rs2282284 (N721S), in Fc receptor like 3 (FCRL3) was associated with bacterial invasion of host cells (p=9x10-8). Overexpressed FCRL3 facilitated attachment and invasion of Y. pestis and colocalized with Y. pestis at attachment sites. These properties were variably conserved across the FCRL family, revealing an Ig-like domain and signaling motifs shared by FCRL3 and FCRL5 to be necessary for attachment and invasion. Direct binding to FCRL5 extracellular domain was confirmed, and B cells (the primary cells that express FCRLs) were preferentially invaded by Y. pestis. Thus, Y. pestis hijacks FCRL proteins, possibly taking advantage of an immune receptor to create a lymphocyte niche during infection. 
Summary statistics for the Hi-HOST GWAS of Y. pestis invasion were previously deposited at the Duke Data Repository (https://doi.org/10.7924/r43n2d008).
DOI: 10.17632/j44rvwcpff.1
title: Commercial Na-ion Cell Ragone Characterization

description: Data for commercial Na-ion cell Ragone characterization, and comparison with Li-ion cell performance. Data supporting the results shown in the paper titled "Electrical characterization of a commercial sodium-ion cell and
analysis of Enhanced Ragone plot in relation to lithium-ion cells".
DOI: 10.17632/j44rvwcpff.2
title: Commercial Sodium-ion Cell Ragone Characterization

description: Data for commercial Na-ion cell Ragone characterization, and comparison with Li-ion cell performance. Data supporting the results shown in the paper titled "Electrical characterization of a commercial Sodium-Ion cell with enhanced Ragone Plot analysis compared to Lithium-Ion cells".