cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17895854
title: Artifact for "Fast First, Flawless Later: Re-evaluating Automated Program Repair for Hot Fixing Time-Critical Bugs"

description: This repository contains the complete results and artifacts associated with the paper “Can Automated Program Repair Tooling Support Hot Fix? An Empirical Study”.The goal of the study is to evaluate the ability of automated program repair (APR) tools to support time-critical hot fix development, with a focus on effectiveness, efficiency, and patch quality.

The results include all run data and per-bug outputs generated by all evaluated tools across the HotBugs.jar benchmark.

The dataset includes outcomes for the following APR tools:





Search-based: ARJA




Template-based: Cardumen




Learning-based: RepairLLaMA




Agentic / Context-aware: AutoCodeRover (multiple model configurations)



Each tool was executed against the HotBugs.jar dataset according to the experimental protocol described in the associated paper.

File Naming Convention

Arja, Cardumen, and RepairLlama tool results follow a consistent naming scheme:





results_<tool>_<run>.zipRaw tool execution outputs, including logs, generated patches, intermediate build artifacts, and tool-specific diagnostic information.These files are large due to extensive patch generation and are primarily intended for inspection, auditing, or re-analysis.




output_<tool>_<run>.zipAggregated, structured results for a specific tool and run.These archives contain  files summarizing run status, patch counts, runtime measurements, and classification outcomes used for quantitative analysis.




summaries_<tool>_<run>.zipLightweight summaries extracted from outputs.These include per-bug outcomes, success indicators, and metadata used to generate plots and tables in the paper.



AutoCodeRover results with both the Llama3 and Llama3:70B settings are stored in autocoderover_results.zip.
DOI: 10.5281/zenodo.17895855
title: Artifact for "Fast First, Flawless Later: Re-evaluating Automated Program Repair for Hot Fixing Time-Critical Bugs"

description: This repository contains the complete results and artifacts associated with the paper “Can Automated Program Repair Tooling Support Hot Fix? An Empirical Study”.The goal of the study is to evaluate the ability of automated program repair (APR) tools to support time-critical hot fix development, with a focus on effectiveness, efficiency, and patch quality.

The results include all run data and per-bug outputs generated by all evaluated tools across the HotBugs.jar benchmark.

The dataset includes outcomes for the following APR tools:





Search-based: ARJA




Template-based: Cardumen




Learning-based: RepairLLaMA




Agentic / Context-aware: AutoCodeRover (multiple model configurations)



Each tool was executed against the HotBugs.jar dataset according to the experimental protocol described in the associated paper.

File Naming Convention

Arja, Cardumen, and RepairLlama tool results follow a consistent naming scheme:





results_<tool>_<run>.zipRaw tool execution outputs, including logs, generated patches, intermediate build artifacts, and tool-specific diagnostic information.These files are large due to extensive patch generation and are primarily intended for inspection, auditing, or re-analysis.




output_<tool>_<run>.zipAggregated, structured results for a specific tool and run.These archives contain  files summarizing run status, patch counts, runtime measurements, and classification outcomes used for quantitative analysis.




summaries_<tool>_<run>.zipLightweight summaries extracted from outputs.These include per-bug outcomes, success indicators, and metadata used to generate plots and tables in the paper.



AutoCodeRover results with both the Llama3 and Llama3:70B settings are stored in autocoderover_results.zip.
DOI: 10.15468/dl.fhfmvc
title: Occurrence Download

description: A dataset containing 13564 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bison bison",
 "Year 2010-2026"
 ]
}

 The dataset includes 13564 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000870-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00012480.0
title: Available datapackage for study 'Use of Behavioral Economics in Repeat SARS-CoV-2 (COVID-19) Antibody Testing in Disadvantaged Communities'

description: Repeat testing for SARS-CoV-2 antibodies in disadvantaged communities will help identify active and recovered infections over time, and as more is understood about antibody protection, it may help identify persons who have immunity. Many questions about social barriers and behavioral facilitators remain unanswered. This project aims to evaluate the effectiveness of risk-based messaging and incentives that promote repeated testing for SARS-CoV-2 antibodies, as well as to understand social and behavioral determinants of COVID-19 testing and variations within sub-groups of this population.
DOI: 10.6084/m9.figshare.31198399
title: Pembrolizumab Analysis in Biological Samples

description: Analysis of pembrolizumab by microextraction and the influence of pharmacokinetic profiles on immune cell activation.
DOI: 10.6084/m9.figshare.31198399.v1
title: Pembrolizumab Analysis in Biological Samples

description: Analysis of pembrolizumab by microextraction and the influence of pharmacokinetic profiles on immune cell activation.
DOI: 10.15468/dl.dzfz75
title: Occurrence Download

description: A dataset containing 450 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Ambystoma texanum"
 ]
 },
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2024",
 "DecimalLatitude is greater than or equal to 39.800293049929145",
 "DecimalLatitude is less than or equal to 49.3755163493321",
 "DecimalLongitude is greater than or equal to -92.87017281670407",
 "DecimalLongitude is less than or equal to -73.31916441842102",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 450 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000873-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14668728
title: Climate_Drivers_Depends
DOI: 10.15468/dl.3p5f2z
title: Occurrence Download

description: A dataset containing 72943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-6.04019 36.66106,-6.09549 36.64332,-6.08544 36.59087,-5.96378 36.50848,-5.89541 36.50444,-5.85017 36.54161,-6.04019 36.66106))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 72943 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000851-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wz9h3c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cleaveius singhai",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000876-260129131611470/datasets/export for details.
DOI: 10.25983/cbi/3014819
title: APPL Hyperspectral_Imaging_Dataset_for_Heritability_Analysis_in_Populus_trichocarpa

description: This dataset contains hyperspectral imaging data collected at the Advanced Plant Phenotyping Laboratory (APPL) at Oak Ridge National Laboratory. Natural variants of Populus trichocarpa were imaged using a high-throughput hyperspectral phenotyping pipeline to quantify spectral reflectance traits for downstream quantitative genetics analyses. The dataset includes hyperspectral image files and derived reflectance data products suitable for extracting spectral features across the measured wavelength range (e.g., VNIR and/or SWIR, depending on instrument configuration), along with associated sample metadata (e.g., genotype identifiers, experimental design factors, and imaging run identifiers). These data were generated to support analyses of broad-sense heritability of hyperspectral traits and their relationships with biochemical phenotypes (including lignin traits from Py-MBMS).
DOI: 10.15468/dl.s78te6
title: Occurrence Download

description: A dataset containing 460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gnathonemus petersii",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 460 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000880-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dt4ern
title: Occurrence Download

description: A dataset containing 5358 records in GBIF matching the query:
SELECT
 '615' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 66.79314043790278
 AND decimalLatitude &lt;= 72.77152049497572
 AND decimalLongitude &gt;= 62.86027460742454
 AND decimalLongitude &lt;= 86.39962160260116
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 5358 records were derived from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000879-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxjta3
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aschersoniodoxa mandoniana",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000881-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbdv5j
title: Occurrence Download

description: A dataset containing 6834 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is one of (North America, South America)",
 "Country is one of (United States of America, Mexico, Guatemala, Nicaragua)",
 "DatasetKey is The New York Botanical Garden Herbarium (NY)",
 "OccurrenceStatus is Present",
 "TaxonKey is Dalea"
 ]
}

 The dataset includes 6834 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000882-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18119385
title: The Southern Ocean and Antarctic Ice Sheet heat contents, datasets for publication "A new paradigm for understanding Earth's marine ice sheets", Sergienko et al. (2026)

description: This repository contains datasets of the area density heat content of the Southern Ocean (SO_heat_content.nc) and the Antarctic Ice Sheet (AIS_heat_content.nc) described in Sergienko et al. (2026). The Southern Ocean heat content is estimated using the  climatological fields of the Global Ocean Physics Reanalysis, the Copernicus Marine Service (CMEMS) Global Ocean Physics eddy-resolving model (1/12 deg horizontal resolution, 50 vertical levels) (https://doi.org/10.48670/moi-00021). The Antarctic Ice Sheet heat content is estimated using the results of Dawson et al. (2022, doi:10.1038/s41467-022-32632-2, https://doi.org/10.5281/zenodo.6870567) and MEaSUREs BedMachine Antarctica. (NSIDC-0756, Version 3) (https://doi.org/10.5067/FPSU0V1MWUB6).
DOI: 10.5281/zenodo.18119386
title: The Southern Ocean and Antarctic Ice Sheet heat contents, datasets for publication "A new paradigm for understanding Earth's marine ice sheets", Sergienko et al. (2026)

description: This repository contains datasets of the area density heat content of the Southern Ocean (SO_heat_content.nc) and the Antarctic Ice Sheet (AIS_heat_content.nc) described in Sergienko et al. (2026). The Southern Ocean heat content is estimated using the  climatological fields of the Global Ocean Physics Reanalysis, the Copernicus Marine Service (CMEMS) Global Ocean Physics eddy-resolving model (1/12 deg horizontal resolution, 50 vertical levels) (https://doi.org/10.48670/moi-00021). The Antarctic Ice Sheet heat content is estimated using the results of Dawson et al. (2022, doi:10.1038/s41467-022-32632-2, https://doi.org/10.5281/zenodo.6870567) and MEaSUREs BedMachine Antarctica. (NSIDC-0756, Version 3) (https://doi.org/10.5067/FPSU0V1MWUB6).
DOI: 10.15468/dl.bvrsfs
title: Occurrence Download

description: A dataset containing 561 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Ambystoma tigrinum"
 ]
 },
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2024",
 "DecimalLatitude is greater than or equal to 39.800293049929145",
 "DecimalLatitude is less than or equal to 49.3755163493321",
 "DecimalLongitude is greater than or equal to -92.87017281670407",
 "DecimalLongitude is less than or equal to -73.31916441842102",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 561 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000886-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/bjh6mw
title: Glanidium botocudo, a new species from the rio Doce and rio Mucuri, Minas Gerais, Brazil (Siluriformes: Auchenipteridae) with comments on taxonomic position of Glanidium bockmanni Sarmento-Soares & Buckup

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sarmento-Soares, Luisa Maria, Martins-Pinheiro, Ronaldo Fernando (2013): Glanidium botocudo, a new species from the rio Doce and rio Mucuri, Minas Gerais, Brazil (Siluriformes: Auchenipteridae) with comments on taxonomic position of Glanidium bockmanni Sarmento-Soares & Buckup. Neotropical Ichthyology 11 (2): 265-274, DOI: 10.1590/S1679-62252013000200004, URL: https://doi.org/10.1590/S1679-62252013000200004Glanidium botocudo, new species, is described from the tributaries to the upper rio Doce and Mucuri, eastern Minas Gerais State, Brazil. It represents the northernmost record of a centromochlin catfish from the coastal rivers of the Northeastern Atlantic Forest. Glanidium botocudo is readily distinguished from its congeners, except Glanidium albescens, by the whitish grey body coloration with evenly spaced small dark brown dots. The new species has a long sharpened ventral process on the urohyal, an uncommon condition among congeners, and the lowest vertebral count among the large-sized Glanidium, 36-37. It differs from Glanidium albescens by proportional measurements and higher number of ribs. Glanidium botocudo and Glanidium albescens are probably sister species, exhibiting similar morphological features and a complimentary distribution pattern, associated to an allopatric distribution pattern. Glanidium bockmanni is transferred to the genus Centromochlus.Glanidium botocudo, espécie nova, é descrita para tributários do alto rio Doce e rio Mucuri, leste de Minas Gerais, Brasil. Representa o registro mais ao norte de um bagre centromoclíneo nos rios do Nordeste da Mata Atlântica. Glanidium botocudo é prontamente distinguido de todos seus congêneres, exceto Glanidium albescens, pelo colorido cinza-esbranquiçado do corpo com máculas castanho-escuras regularmente espaçadas. A espécie nova apresenta processo ventral do uro-hial longo e afilado, uma condição incomum entre os congêneres, e ainda a menor contagem vertebral entre os Glanidium de grande porte, 36-37. Diferencia-se de Glanidium albescens por proporções corporais e maior número de costelas. Glanidium botocudo e Glanidium albescens são possivelmente espécies irmãs, apresentando características morfológicas similares e padrões de distribuição complementar, associados a um padrão de distribuição alopátrica. Glanidium bockmanni é transferido para o gênero Centromochlus.
DOI: 10.15468/dl.74a3wy
title: Occurrence Download

description: A dataset containing 1925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Mustela nigripes"
 ]
}

 The dataset includes 1925 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000887-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.763q9t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cleaveius thapari",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000889-260129131611470/datasets/export for details.
DOI: 10.15468/dl.tmvz3p
title: Occurrence Download

description: A dataset containing 22937640 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "Year 2015-2025"
 ]
}

 The dataset includes 22937640 records from 958 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000878-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18347688
title: Morin Above and Belowground Forest Carbon Model Equifinality Paper, Optimized Degraded Ensemble
DOI: 10.5281/zenodo.18347689
title: Morin Above and Belowground Forest Carbon Model Equifinality Paper, Optimized Degraded Ensemble
DOI: 10.15468/dl.gyvwu6
title: Occurrence Download

description: A dataset containing 2727 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pectocarya recurvata"
 ]
}

 The dataset includes 2727 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000890-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16911200
title: TABLE 1 in Astragalus helanshanensis, a new plant species from the arid region of the Helan Mountains in northwestern China

description: TABLE 1. Detailed comparison of Astragalus helanshanensis and A. borodinii.
Morphological charactersA. helanshanensisA. borodiniiStem height (cm)3–53–7Plant indumentumDensely covered with appressed hairsDensely covered with hairsStipulesCovered with short, soft hairsCovered with long, soft hairs, subapressed subbasifixed to basifixed hairs and at the margins with spreading, basifixed hairyLeaf length (cm)2–42–5Number of leaflets2 pairs(1–) 2 pairsleaflet orientationOppositeAlternateLeaflet shapeAcuteObtuse to subacuteLeaflet size (mm)8–15 × 4–58–20 x 3–8Raceme (number of flowers)1–32–3Corolla colorWhitePinkCalyxCalyx is tubular, 13–16 mm long, densely covered with white or black hairsCalyx 11–13 mm, densely villous,Standard18–26 mm long27–30 mm longWingsAbout 15–20 mm long, with a rounded tip and notched15–20 mm long, no rounded tip and notchedKeelKeel petals are slightly shorter than the wings, with the petal length about half the petiole lengthShorter than wing petals, with the petal shorter than the petioleLegume podOvate-elongate, 10–12 mm long, 2–3 mm thick, bilocularEllipsoid-globose, 4–5 mm long, 3–4.5 mm thick, incompletely 2-locular to 1-locular
description: Published as part of Yang, Bo, Wang, Wenqiang, Wei, Siyu, Liang, Yongliang, Xu, Hao, Ma, Jinlian & Li, Xiaowei, 2025, Astragalus helanshanensis, a new plant species from the arid region of the Helan Mountains in northwestern China, pp. 104 in Phytotaxa 690 (1) on page 104, DOI: 10.11646/phytotaxa.690.1.8, http://zenodo.org/record/16709177
DOI: 10.5281/zenodo.16911201
title: TABLE 1 in Astragalus helanshanensis, a new plant species from the arid region of the Helan Mountains in northwestern China

description: TABLE 1. Detailed comparison of Astragalus helanshanensis and A. borodinii.
Morphological charactersA. helanshanensisA. borodiniiStem height (cm)3–53–7Plant indumentumDensely covered with appressed hairsDensely covered with hairsStipulesCovered with short, soft hairsCovered with long, soft hairs, subapressed subbasifixed to basifixed hairs and at the margins with spreading, basifixed hairyLeaf length (cm)2–42–5Number of leaflets2 pairs(1–) 2 pairsleaflet orientationOppositeAlternateLeaflet shapeAcuteObtuse to subacuteLeaflet size (mm)8–15 × 4–58–20 x 3–8Raceme (number of flowers)1–32–3Corolla colorWhitePinkCalyxCalyx is tubular, 13–16 mm long, densely covered with white or black hairsCalyx 11–13 mm, densely villous,Standard18–26 mm long27–30 mm longWingsAbout 15–20 mm long, with a rounded tip and notched15–20 mm long, no rounded tip and notchedKeelKeel petals are slightly shorter than the wings, with the petal length about half the petiole lengthShorter than wing petals, with the petal shorter than the petioleLegume podOvate-elongate, 10–12 mm long, 2–3 mm thick, bilocularEllipsoid-globose, 4–5 mm long, 3–4.5 mm thick, incompletely 2-locular to 1-locular
description: Published as part of Yang, Bo, Wang, Wenqiang, Wei, Siyu, Liang, Yongliang, Xu, Hao, Ma, Jinlian & Li, Xiaowei, 2025, Astragalus helanshanensis, a new plant species from the arid region of the Helan Mountains in northwestern China, pp. 104 in Phytotaxa 690 (1) on page 104, DOI: 10.11646/phytotaxa.690.1.8, http://zenodo.org/record/16709177