cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0125826.10fu
title: SH0125826.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive136685.20251217.10
title: Pseudomonas stutzeri

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136686.20241212.9.2
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136686.20251217.10
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136687.20250331.9.3
title: Vibrio splendidus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0125827.10fu
title: SH0125827.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive136687.20251217.10
title: Vibrio splendidus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136688.20241212.9.2
title: Shewanella colwelliana

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0125828.10fu
title: SH0125828.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive136688.20251217.10
title: Shewanella colwelliana

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136689.20241212.9.2
title: Agrobacterium radiobacter

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0125829.10fu
title: SH0125829.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive136689.20251217.10
title: Agrobacterium radiobacter

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136690.20241212.9.2
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136690.20251217.10
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136691.20241212.9.2
title: Pandoraea sputorum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136691.20251217.10
title: Pandoraea sputorum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136692.20241212.9.2
title: Listeria monocytogenes

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive136692.20251217.10
title: Listeria monocytogenes

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.18167998
title: A Multi-Scale Mechanistic Model Reveals How 14-3-3 Tunes ASK1 Activity Through Long-Range Allosteric Remodeling

description: This dataset contains all molecular dynamics system-preparation files, simulation input parameters, workflow scripts, and initial structural models required to reproduce the computational methodology and key mechanistic analyses reported in the study “A Multi-Scale Mechanistic Model Reveals How 14-3-3 Tunes ASK1 Activity Through Long-Range Allosteric Remodeling.”

The archive includes:





PDB files for all monomeric and dimeric systems, including experimentally determined structures, SAXS-derived conformers, and AlphaFold-Multimer models




AMBER input files for energy minimization, equilibration, and production molecular dynamics simulations




Bash scripts for automated system preparation and MD execution




Documentation describing the computational workflow and simulation protocols



Raw production trajectories are not included due to size constraints. These trajectories are not required to reproduce the essential results or mechanistic conclusions, which are derived from reproducible analyses of structural ensembles, pocket volumes, hydration behavior, and residue-interaction metrics.

Representative trajectory movies corresponding to the production simulations are publicly available via Figshare links provided in the associated manuscript.
DOI: 10.13145/bacdive136693.20241212.9.2
title: Staphylococcus aureus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.y7ovu4
title: Occurrence Download

description: A dataset containing 2372 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate reprojected"
 ]
 },
 "Year 1990-2019",
 "Geometry POLYGON((-105.80419 20.39434,-105.28652 19.17638,-103.04926 17.9671,-102.05082 18.52907,-101.40373 20.27299,-102.03237 21.68854,-103.6779 22.33978,-105.13864 21.73998,-105.80419 20.39434))",
 "TaxonKey is Momotus mexicanus Swainson, 1827",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2372 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038509-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3j8vbm
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "TaxonKey is Salvia glutinosa L."
 ]
}

 The dataset includes 230 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097172-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cz39xb
title: Occurrence Download

description: A dataset containing 303 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Anthreptes rubritorques Reichenow, 1905"
 ]
}

 The dataset includes 303 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003173-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt33le
title: Occurrence Download

description: A dataset containing 4698392 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 4698392 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038510-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znbdag
title: Occurrence Download

description: A dataset containing 785 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plebejus argus (Linnaeus, 1758)",
 "Year 1970-2000"
 ]
}

 The dataset includes 785 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105727-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbamqh
title: Occurrence Download

description: A dataset containing 858 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Rhynchopsitta pachyrhyncha (Swainson, 1827)"
 ]
}

 The dataset includes 858 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003183-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uu1o4y
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate reprojected"
 ]
 },
 "Year 1990-2019",
 "Geometry POLYGON((-105.80419 20.39434,-105.28652 19.17638,-103.04926 17.9671,-102.05082 18.52907,-101.40373 20.27299,-102.03237 21.68854,-103.6779 22.33978,-105.13864 21.73998,-105.80419 20.39434))",
 "TaxonKey is Myiopsitta monachus (Boddaert, 1783)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 108 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038511-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5kjyy
title: Occurrence Download

description: A dataset containing 14997 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ursus americanus Pallas, 1780"
 ]
}

 The dataset includes 14997 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005663-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p74hts
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Friesodielsia philippinensis (Merr.) Steenis"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010419-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgf1fi
title: Occurrence Download

description: A dataset containing 4820 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Morus alba L.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 4820 records from 197 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038512-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wca6mg
title: Occurrence Download

description: A dataset containing 5089 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geranium homeanum Turcz."
 ]
}

 The dataset includes 5089 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010420-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwtx5n
title: Occurrence Download

description: A dataset containing 1046 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Muhlenbergia montana (Nutt.) Hitchc.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 1046 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038513-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5scz7c
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gaultheria sinensis J.Anthony"
 ]
}

 The dataset includes 194 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010421-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wykjlb
title: Occurrence Download

description: A dataset containing 2298 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Murraya paniculata (L.) Jacq.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 2298 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038515-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7rd85
title: Occurrence Download

description: A dataset containing 206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Зимние маршрутные учеты в природном парке «Нумто» (Ханты-Мансийский Автономный Округ)"
 ]
}

 The dataset includes 206 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105744-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ojqxe4
title: Occurrence Download

description: A dataset containing 1417 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate reprojected"
 ]
 },
 "Year 1990-2019",
 "Geometry POLYGON((-105.80419 20.39434,-105.28652 19.17638,-103.04926 17.9671,-102.05082 18.52907,-101.40373 20.27299,-102.03237 21.68854,-103.6779 22.33978,-105.13864 21.73998,-105.80419 20.39434))",
 "TaxonKey is Myiarchus tyrannulus (Statius Muller, 1776)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1417 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038515-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsqwpf
title: Occurrence Download

description: A dataset containing 2561 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Condylura cristata (Linnaeus, 1758)"
 ]
}

 The dataset includes 2561 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061928-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3k6dn
title: Occurrence Download

description: A dataset containing 260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Учет следов по первому снегу (Белая тропа)"
 ]
}

 The dataset includes 260 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105738-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wby73f
title: Occurrence Download

description: A dataset containing 12502 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Deltote uncula (Clerck, 1759)",
 "Year 1970-2024"
 ]
}

 The dataset includes 12502 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061945-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.98ma8l
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Oman",
 "TaxonKey is Chelonia mydas (Linnaeus, 1758)"
 ]
}

 The dataset includes 27 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038535-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.339ru5
title: Occurrence Download

description: A dataset containing 38940 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vitis vinifera L."
 ]
}

 The dataset includes 38940 records from 317 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105729-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3fh4s
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptospora inconspicua (Kom.) O.E.Schulz"
 ]
}

 The dataset includes 18 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012862-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrxx9w
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sophiothrips greensladei Mound & Walker, 1982)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045240-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrmzqs
title: Occurrence Download

description: A dataset containing 4698392 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 4698392 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038518-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujphvk
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Billardiera uniflora E.M.Benn."
 ]
}

 The dataset includes 229 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097175-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.