cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11916143
title: Data for: The transmission ability in a population of elite tetraploid potatoes

description: Data set for the research article: Assessing the transmission potential of elite tetraploid potatoes.

The dataset includes pedigree and phenotypic data of 5013 clones of an F1 population derived from an incomplete diallel cross of 18 parents of either established cultivars or elite breeding material from Danespo A/S across three market segments (starch, processing, and table). A total of 10 phenotypes are included, namely dry matter content, yield, senescence, skin finish, flesh color, length/width ratio, length, diameter, tubers/plant, and eye depth. In addition, GBS genotype data for a set of 93,170 biallelic SNPs filtered to MAF > 1 %, coverage > 5 and < 60, and missing rate < 70 %. Pedigree (A), genomic (G), and single-step combined (H) matrices are included.  A README file is included with descriptions of all provided data files.
DOI: 10.5281/zenodo.14621344
title: Data for: The transmission ability in a population of elite tetraploid potatoes

description: Data set for the research article: Assessing the transmission potential of elite tetraploid potatoes.

The dataset includes pedigree and phenotypic data of 5013 clones of an F1 population derived from an incomplete diallel cross of 18 parents of either established cultivars or elite breeding material from Danespo A/S across three market segments (starch, processing, and table). A total of 10 phenotypes are included, namely dry matter content, yield, senescence, skin finish, flesh color, length/width ratio, length, diameter, tubers/plant, and eye depth. In addition, GBS genotype data for a set of 93,170 biallelic SNPs filtered to MAF > 1 %, coverage > 5 and < 60, and missing rate < 70 %. Pedigree (A), genomic (G), and single-step combined (H) matrices are included.  A README file is included with descriptions of all provided data files.
DOI: 10.5281/zenodo.14280746
title: Mapping the interaction surface between CaVβ and actin and its role in calcium channel clearance

description: HADDOCK protein-protein docking data for the CaVβ/F-actin complex models reported in "Mapping the interaction surface between CaVβ and actin and its role in calcium channel clearance".

The dataset is divided in two different folders, corresponding to the two CaVβ isoforms studied, β2 (PDB 5V2P) and β4 (PDB 1VYV). Each folder contains:

- Inputs: 



XL/MS-derived unambiguous distance restraints 

Bioinformatics-derived (CPORT and NACCESS) ambiguous distance restraints


- Outputs: 



Top 4 models of the selected HADDOCK cluster
DOI: 10.5281/zenodo.15179904
title: Mapping the interaction surface between CaVβ and actin and its role in calcium channel clearance

description: HADDOCK protein-protein docking data for the CaVβ/F-actin complex models reported in "Mapping the interaction surface between CaVβ and actin and its role in calcium channel clearance".

 

The dataset is divided in four different folders:



Cavbeta2: data for the docking between dimeric actin (PDB 5OOE) and CaVβ2 (PDB 5V2P) using XL-MS-derived distance restraints 

Cavbeta4: data for the docking between dimeric actin (PDB 5OOE) and CaVβ4 (PDB 1VYV) using XL-MS-derived distance restraints 

Monomer: data for the control docking between monomeric actin (PDB 5OOE) and CaVβ2 (PDB 5V2P) using XL-MS-derived distance restraints 

Ab_initio: data for the control dockings between dimeric actin (PDB 5OOE) and CaVβ2 (PDB 5V2P) without XL-MS-derived distance restraints and using the ab initio options available in HADDOCK 2.4


 

Each of the Cavbeta folders (1-2) and the Monomer folder (3) contain:

- Inputs: 



HADDOCK run parameter file (job_params.json)

XL/MS-derived unambiguous distance restraints (unambig.tbl)

Bioinformatics-derived (CPORT and NACCESS) ambiguous distance restraints (ambig.tbl)


- Outputs:



Top 4 models of the selected HADDOCK cluster (cluster1_1.pdb, ..., cluster1_4.pdb)

Source data for the docking analyses presented in the Supplementary Information (Supplementary Figures 4, 6, 9, 13 and 14 and Supplementary Table 4)


 

The Ab_initio folder (4) contains:

- Input: 



HADDOCK run parameter files for each of the six control simulations presented in Supplementary Table 6 (job_params.json)


- Outputs:



Source data for the docking analyses presented in Supplementary Table 6

Model from control simulation 1 shown in Supplementary Figure 5
DOI: 10.5281/zenodo.8276447
title: Mapping the interaction surface between CaVβ and actin and its role in calcium channel clearance

description: HADDOCK protein-protein docking data for the CaVβ/F-actin complex models reported in "Mapping the interaction surface between CaVβ and actin and its role in calcium channel clearance".

 

The dataset is divided in four different folders:



Cavbeta2: data for the docking between dimeric actin (PDB 5OOE) and CaVβ2 (PDB 5V2P) using XL-MS-derived distance restraints 

Cavbeta4: data for the docking between dimeric actin (PDB 5OOE) and CaVβ4 (PDB 1VYV) using XL-MS-derived distance restraints 

Monomer: data for the control docking between monomeric actin (PDB 5OOE) and CaVβ2 (PDB 5V2P) using XL-MS-derived distance restraints 

Ab_initio: data for the control dockings between dimeric actin (PDB 5OOE) and CaVβ2 (PDB 5V2P) without XL-MS-derived distance restraints and using the ab initio options available in HADDOCK 2.4


 

Each of the Cavbeta folders (1-2) and the Monomer folder (3) contain:

- Inputs: 



HADDOCK run parameter file (job_params.json)

XL/MS-derived unambiguous distance restraints (unambig.tbl)

Bioinformatics-derived (CPORT and NACCESS) ambiguous distance restraints (ambig.tbl)


- Outputs:



Top 4 models of the selected HADDOCK cluster (cluster1_1.pdb, ..., cluster1_4.pdb)

Source data for the docking analyses presented in the Supplementary Information (Supplementary Figures 4, 6, 9, 13 and 14 and Supplementary Table 4)


 

The Ab_initio folder (4) contains:

- Input: 



HADDOCK run parameter files for each of the six control simulations presented in Supplementary Table 6 (job_params.json)


- Outputs:



Source data for the docking analyses presented in Supplementary Table 6

Model from control simulation 1 shown in Supplementary Figure 5
DOI: 10.5281/zenodo.8276448
title: Quality control at the cell surface prevents accumulation of damaged L-type CaV1.2 calcium channels

description: HADDOCK protein-protein docking data for the CaVβ/F-actin complex models reported in "Interaction of CaVβ and actin supports the clearance of functionally defective CaV1.2 channels".


The dataset is divided in two different folders, corresponding to the two CaVβ isoforms studied, β2 (PDB 5V2P) and β4 (PDB 1VYV). Each folder contains:


- Inputs: 



	
XL/MS-derived unambiguous distance restraints 
	
Bioinformatics-derived (CPORT and NACCESS) ambiguous distance restraints



- Outputs: 



	
Top 4 models of the best HADDOCK scored cluster
DOI: 10.15468/dl.a5pnhv
title: Occurrence Download

description: A dataset containing 8001 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calamagrostis neglecta G.Gaertn., B.Mey. & Scherb.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 8001 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018539-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78avbp
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bacteria from Penguin Guano, Antarctica"
 ]
}

 The dataset includes 70 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027748-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7k4c2t
title: Occurrence Download

description: A dataset containing 317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ninox spilocephala Tweeddale, 1879",
 "HasCoordinate is True",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2021",
 "Month is greater than or equal to January",
 "Month is less than or equal to December",
 "HasGeospatialIssue is False"
 ]
}

 The dataset includes 317 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004860-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7z482p
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Boana hutchinsi (Pyburn & Hall, 1984)"
 ]
}

 The dataset includes 46 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018540-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmjduo
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Zamia restrepoi (D.W.Stev.) A.Lindstr.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027748-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jhxx38
title: Occurrence Download

description: A dataset containing 173799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-99.95155 19.46365,-99.97765 18.88138,-99.4503 18.84155,-99.19762 18.93631,-99.25667 19.44168,-99.95155 19.46365))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 173799 records from 485 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163278-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.khv2xx
title: Occurrence Download

description: A dataset containing 506 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Sex is one of (Male, Female)",
 "TaxonKey is Rubus chamaemorus L."
 ]
}

 The dataset includes 506 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020063-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzklgk
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diplogale hosei (Thomas, 1892)"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027749-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtzg73
title: Occurrence Download

description: A dataset containing 286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex crus-corvi Shuttlew. ex Kunze",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 286 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174800-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9svxjx
title: Occurrence Download

description: A dataset containing 605 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Philoria loveridgei Parker, 1940"
 ]
}

 The dataset includes 605 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018492-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4z8gu4
title: Occurrence Download

description: A dataset containing 36071 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Molossus E.Geoffroy, 1805"
 ]
}

 The dataset includes 36071 records from 306 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047139-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7xzd37
title: Occurrence Download

description: A dataset containing 1250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex deweyana Schwein.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 1250 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174812-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxvr1k
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micrurus mipartitus anomalus (Boulenger, 1896)"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027749-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ypa2ca
title: Occurrence Download

description: A dataset containing 931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 14.1883146615539",
 "DecimalLongitude is less than 14.1913742147382",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 931 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018487-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvbjdt
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Luma hoehnei Burret",
 "TaxonKey is Myrceugenia filibracteata (Burret) D.Legrand",
 "TaxonKey is Myrceugenia hoehnei (Burret) D.Legrand & Kausel"
 ]
}

 The dataset includes 61 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223389-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.achwji
title: Occurrence Download

description: A dataset containing 10835 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lophoictinia isura (Gould, 1838)"
 ]
}

 The dataset includes 10835 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027750-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmravt
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arabis montbretiana Boiss."
 ]
}

 The dataset includes 84 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022716-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zwsh9
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex decomposita Muhl.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 74 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174810-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wsvywu
title: Occurrence Download

description: A dataset containing 2407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Schilbe intermedius Rüppell, 1832)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2407 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047140-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdrkqp
title: Occurrence Download

description: A dataset containing 347 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 {
 "or" : [
 "Country is Spain",
 "Country is Portugal"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Opuntia dillenii (Ker Gawl.) Haw.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 347 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027750-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2q35m9
title: Occurrence Download

description: A dataset containing 2641 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Leptobalanus octandrus (Hoffmanns. ex Roem. & Schult.) Sothers & Prance, Licania octandra Pilg., 1923, Hirtella octandra Willd., Licania turiuva Cham. & Schltdl., Moquilea turiuva (Cham. & Schltdl.) Hook.fil.)"
 ]
}

 The dataset includes 2641 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022989-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xx2ccc
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Otus moheliensis Lafontaine & Moulaert, 1998",
 "HasCoordinate is True",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2021",
 "Month is greater than or equal to January",
 "Month is less than or equal to December",
 "HasGeospatialIssue is False"
 ]
}

 The dataset includes 24 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004873-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azn6x1
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bacteria from Penguin Guano, Antarctica"
 ]
}

 The dataset includes 70 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027753-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edvedb
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Craugastor saltator (Taylor, 1941)"
 ]
}

 The dataset includes 160 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022992-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxjjmw
title: Occurrence Download

description: A dataset containing 49130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equisetum pratense Ehrh.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is False",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is less than 180",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180"
 ]
}

 The dataset includes 49130 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074425-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5rcmpb
title: Occurrence Download

description: A dataset containing 52000 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation"
 ]
 },
 {
 "or" : [
 "Country is France",
 "Country is Spain"
 ]
 },
 "Geometry POLYGON((4.04297 44.22316,8.95605 44.2924,13.16602 45.87165,15.71484 43.17794,16.59375 43.39547,13.78125 46.23761,16.24219 46.54073,16.82227 47.94873,22.92187 48.92827,22.57031 44.65928,28.61719 45.10145,23.625 52.38633,16.52344 51.45401,10.79297 50.68637,1.65234 46.32265,4.04297 44.22316))",
 "HasCoordinate is true",
 "TaxonKey is Abies alba Mill.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 52000 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027753-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqejpe
title: Occurrence Download

description: A dataset containing 8019 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Automolus exsertus Bangs, 1901",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 8019 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022717-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jvsxje
title: Occurrence Download

description: A dataset containing 32747 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Tajikistan"
 ]
}

 The dataset includes 32747 records from 286 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163280-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.