cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3659243_d25.v1
title: Additional file 9: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by REALPHY, PhyML, NC_000913 and NC_012759 used as reference. PDF. b Tree inferred by REALPHY, PhyML, NC_000913 and NC_012759 used as reference. Newick file. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.c.3659243_d26.v1
title: Additional file 2: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by CSI Phylogeny pruning disabled, E. coli MG1655 (NC_000913) used as reference. PDF. b Tree inferred by CSI Phylogeny pruning disabled, E. coli MG1655 (NC_000913) used as reference. Newick file. (ZIP 6 kb)
DOI: 10.6084/m9.figshare.c.3659243_d25
title: Additional file 9: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by REALPHY, PhyML, NC_000913 and NC_012759 used as reference. PDF. b Tree inferred by REALPHY, PhyML, NC_000913 and NC_012759 used as reference. Newick file. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.c.3659243_d24
title: Additional file 25: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: Tab separated table, showing results from the new tree comparison method when the cutoff was set to 0. (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3659243_d23
title: Additional file 3: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, contigs from day 1 used as reference. PDF. b Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, contigs from day 1 used as reference. Newick file. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.c.3659243_d26
title: Additional file 2: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by CSI Phylogeny pruning disabled, E. coli MG1655 (NC_000913) used as reference. PDF. b Tree inferred by CSI Phylogeny pruning disabled, E. coli MG1655 (NC_000913) used as reference. Newick file. (ZIP 6 kb)
DOI: 10.6084/m9.figshare.4524866
title: Cystoseira field and laboratory data, March-June

description: This dataset contains all Cystoseira measures (plant size, number of fish bites, biomass, number of receptacles) collected at two sites in the Villefranche Bay, France in 2014.<br>
DOI: 10.6084/m9.figshare.c.3660302_d1.v1
title: MOESM1 of A step-by-step approach to improve data quality when using commercial business lists to characterize retail food environments

description: Additional file 1. Purchasing instructions for all business types.
DOI: 10.6084/m9.figshare.c.3660302_d1
title: MOESM1 of A step-by-step approach to improve data quality when using commercial business lists to characterize retail food environments

description: Additional file 1. Purchasing instructions for all business types.
DOI: 10.6084/m9.figshare.c.3660314_d1.v1
title: Additional file 1: Table S1. of DNA polymerase kappa protects human cells against MMC-induced genotoxicity through error-free translesion DNA synthesis

description: Primer list. Table S2. Mutation spectra of TK â  /â   mutants. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3660347_d1
title: Additional file 1: of S2O â   A software tool for integrating research data from general purpose statistic software into electronic data capture systems

description: Sample SPSS file. The data contains variables with all possible data types and example cases with values. (SAV 3Â kb)
DOI: 10.6084/m9.figshare.c.3660317_d4.v1
title: Additional file 9: Table S10. of Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae

description: DEGs related to SVW resistance in genotype-specific pattern. (XLSX 505Â kb)
DOI: 10.6084/m9.figshare.28049696
title: Allium tricoccum raw GC-MS files

description: Metabolite extraction from Allium tricoccum leaf tissue
DOI: 10.6084/m9.figshare.28049696.v1
title: Allium tricoccum raw GC-MS files

description: Metabolite extraction from Allium tricoccum leaf tissue
DOI: 10.6084/m9.figshare.c.3660317_d4
title: Additional file 9: Table S10. of Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae

description: DEGs related to SVW resistance in genotype-specific pattern. (XLSX 505Â kb)
DOI: 10.6084/m9.figshare.c.3660347_d2.v1
title: Additional file 2: of S2O â   A software tool for integrating research data from general purpose statistic software into electronic data capture systems

description: Converted ODM result: The file contains the result of the S2O conversion in CDISC ODM format. It includes all metadata variables as well as clinical cases. (XML 12Â kb)
DOI: 10.6084/m9.figshare.c.3660341_d3.v1
title: Additional file 2 of Use of liquid biopsies to monitor disease progression in a sarcoma patient: a case report

description: Somatic mutations identified in primary tumour and plasma samples using NCGC 900 and Thunderbolt Cancer Panel. (XLS 62 kb)
DOI: 10.6084/m9.figshare.c.3660347_d2
title: Additional file 2: of S2O â   A software tool for integrating research data from general purpose statistic software into electronic data capture systems

description: Converted ODM result: The file contains the result of the S2O conversion in CDISC ODM format. It includes all metadata variables as well as clinical cases. (XML 12Â kb)
DOI: 10.6084/m9.figshare.c.3660317_d5.v1
title: Additional file 8: Table S9. of Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae

description: Genotype-specific transcriptional DEGs results in resistant genotype and susceptible genotype. (XLSX 4357Â kb)
DOI: 10.6084/m9.figshare.c.3660341_d3
title: Additional file 2 of Use of liquid biopsies to monitor disease progression in a sarcoma patient: a case report

description: Somatic mutations identified in primary tumour and plasma samples using NCGC 900 and Thunderbolt Cancer Panel. (XLS 62 kb)
DOI: 10.6084/m9.figshare.c.3660317_d5
title: Additional file 8: Table S9. of Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae

description: Genotype-specific transcriptional DEGs results in resistant genotype and susceptible genotype. (XLSX 4357Â kb)
DOI: 10.6084/m9.figshare.c.3660317_d6.v1
title: Additional file 7: Table S8. of Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae

description: DEGs involved in SVW resistance in genotype-common pattern. (XLSX 53Â kb)
DOI: 10.6084/m9.figshare.c.3660317_d9.v1
title: Additional file 3: Table S2. of Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae

description: DEGs of SCK-VS-PCK. (XLSX 1084Â kb)
DOI: 10.6084/m9.figshare.c.3660386_d1.v1
title: Additional file 8: Table S5. of Shotgun proteomics of the barley seed proteome

description: List of the barley seed proteins with descriptions derived from Uniprot, unique peptide count, spectrum count and percent protein coverage. (XLSX 355 kb)
DOI: 10.6084/m9.figshare.c.3660386_d1
title: Additional file 8: Table S5. of Shotgun proteomics of the barley seed proteome

description: List of the barley seed proteins with descriptions derived from Uniprot, unique peptide count, spectrum count and percent protein coverage. (XLSX 355 kb)
DOI: 10.6084/m9.figshare.c.3660359_d3.v1
title: Additional file 1: of Overexpression of PaNAC03, a stress induced NAC gene family transcription factor in Norway spruce leads to reduced flavonol biosynthesis and aberrant embryo development

description: Sequences of primers used in the study. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3660317_d9
title: Additional file 3: Table S2. of Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae

description: DEGs of SCK-VS-PCK. (XLSX 1084Â kb)
DOI: 10.6084/m9.figshare.c.3772079_d1.v1
title: MOESM1 of ChemSAR: an online pipelining platform for molecular SAR modeling

description: Additional file 1: The code snippets to show the implementation of calculating molecular fingerprints.
DOI: 10.6084/m9.figshare.c.3772079_d1
title: MOESM1 of ChemSAR: an online pipelining platform for molecular SAR modeling

description: Additional file 1: The code snippets to show the implementation of calculating molecular fingerprints.
DOI: 10.6084/m9.figshare.c.3770840_d5.v1
title: MOESM5 of Metabolomics approach reveals annual metabolic variation in roots of Cyathula officinalis Kuan based on gas chromatographyâ  mass spectrum

description: Additional file 5. Metabolites changing significantly between groups based on ANOVA results.
DOI: 10.15468/dl.g353dm
title: Occurrence Download

description: A dataset containing 1624 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Base de datos de los pastos marinos mexicanos."
 ]
}

 The dataset includes 1624 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038043-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3770840_d5
title: MOESM5 of Metabolomics approach reveals annual metabolic variation in roots of Cyathula officinalis Kuan based on gas chromatographyâ  mass spectrum

description: Additional file 5. Metabolites changing significantly between groups based on ANOVA results.
DOI: 10.6084/m9.figshare.c.3770840_d4
title: MOESM4 of Metabolomics approach reveals annual metabolic variation in roots of Cyathula officinalis Kuan based on gas chromatographyâ  mass spectrum

description: Additional file 4. Metabolites identified by GCâ  MS.
DOI: 10.6084/m9.figshare.c.3770840_d4.v1
title: MOESM4 of Metabolomics approach reveals annual metabolic variation in roots of Cyathula officinalis Kuan based on gas chromatographyâ  mass spectrum

description: Additional file 4. Metabolites identified by GCâ  MS.
DOI: 10.6084/m9.figshare.c.3627962_d1.v1
title: Additional file 2: of Association of KCTD10, MVK, and MMAB polymorphisms with dyslipidemia and coronary heart disease in Han Chinese population

description: The dataset of this article. (CSV 145Â kb)
DOI: 10.6084/m9.figshare.c.3627932_d2.v1
title: MOESM10 of Structure-oriented substrate specificity engineering of aldehyde-deformylating oxygenase towards aldehydes carbon chain length

description: Additional file 10. Original data for determination of apparent kcat values of WT and mutants.
DOI: 10.6084/m9.figshare.c.3612917_d1.v1
title: Additional file 1: of Information and Risk Modification Trial (INFORM): design of a randomised controlled trial of communicating different types of information about coronary heart disease risk, alongside lifestyle advice, to achieve change in health-related behaviour

description: Appendix A. An example of presentation of phenotypic coronary heart disease risk score. Appendix B. Mathematical coronary heart disease functions to predict 10-year risk of coronary heart disease. Appendix C. An example of presentation of genetic coronary heart disease risk score. Appendix D. INFORM SNPs for genetic risk score. Appendix E. Mathematical formulas for calculation of risk estimates based on genetic risk score (GRS). (ZIP 112 kb)
DOI: 10.6084/m9.figshare.28049705
title: Aloe sp. raw GC-MS files

description: Metabolite extraction from Aloe sp. leaf tissue
DOI: 10.6084/m9.figshare.28049705.v1
title: Aloe sp. raw GC-MS files

description: Metabolite extraction from Aloe sp. leaf tissue
DOI: 10.6084/m9.figshare.c.3597131_d19.v1
title: Additional file 10: Table S8. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597131_d16.v1
title: Additional file 9: Table S7. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597131_d17.v1
title: Additional file 5: Table S3. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597131_d14.v1
title: Additional file 13: Table S11. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597131_d13.v1
title: Additional file 8: Table S6. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597131_d12.v1
title: Additional file 11: Table S9. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597131_d11.v1
title: Additional file 12: Table S10. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3285353_d682
title: PAGES2k_v2.0.0.mat

description: Matlab-readable data structure
DOI: 10.6084/m9.figshare.c.3285353_d685
title: HADCRUT4.2 temperature data

description: Matlab data file containing the GraphEM- infilled version of HadCRUT4.2
DOI: 10.6084/m9.figshare.c.3493548_d18.v1
title: Sample image 1: long-term single-cell growth monitoring (MC4100 cells at 25C)

description: 25C Sample image 1
DOI: 10.6084/m9.figshare.c.3285353_d681
title: PAGES2k_v2.0.0_LiPD.zip

description: Original records in the Linked Paleo Data (http://wiki.linked.earth/Linked_Paleo_Data) format
DOI: 10.15468/dl.rfy63p
title: Occurrence Download

description: A dataset containing 35204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Pheugopedius felix (P.L.Sclater, 1860)"
 ]
}

 The dataset includes 35204 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038045-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28049714
title: Asparagus densiflorus raw GC-MS files

description: Metabolite extraction from Asparagus densiflorus leaf tissue
DOI: 10.6084/m9.figshare.28049714.v1
title: Asparagus densiflorus raw GC-MS files

description: Metabolite extraction from Asparagus densiflorus leaf tissue
DOI: 10.15468/dl.28gcz8
title: Occurrence Download

description: A dataset containing 52266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Pheucticus melanocephalus (Swainson, 1827)"
 ]
}

 The dataset includes 52266 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038046-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28049690
title: dataset_3

description: Testing the formula reliability
DOI: 10.6084/m9.figshare.28049690.v1
title: dataset_3

description: Testing the formula reliability
DOI: 10.6084/m9.figshare.28049690.v2
title: dataset_3

description: Testing the formula reliability
DOI: 10.6084/m9.figshare.c.3596987_d9.v1
title: Additional file 8: of Blood lipids influence DNA methylation in circulating cells

description: Mendelian randomization reveals an effect of lipid levels on DNA methylation for some of the EWAS-identified CpGs. Estimate is the percentage change in DNA methylation per standard deviation change in lipid levels. (CSV 1Â kb)
DOI: 10.6084/m9.figshare.c.3596990_d6.v1
title: Additional file 5: of The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus

description: Individual fold changes – individual fold change values for all genes incorporated in Fig. 4. (XLSX 1253 kb)
DOI: 10.6084/m9.figshare.c.3597014_d2.v1
title: Additional file 2: of Inverse relationship between microRNA-155 and -184 expression with increasing conjunctival inflammation during ocular Chlamydia trachomatis infection

description: Differential expression analysis of miR from A2497 and A2497P- infected HEp-2 cells. Results of DESeq differential expression analysis of sequencing read count data for uninfected HEp-2 cells versus HEp-2 cells infected with A2497 and A2497P- strains of Chlamydia trachomatis at 48hpi. MiR with an average read count &lt;5 were excluded. Three biological replicates of each condition were sequenced and analyzed. MRC = Mean read count, −VE = mock-infected cells. (XLS 141 kb)
DOI: 10.6084/m9.figshare.c.3596987_d13.v1
title: Additional file 10: of Blood lipids influence DNA methylation in circulating cells

description: Power calculations were performed for the situations where the EWAS effect size estimate is (1) the true causal effect size, (2) half the true causal effect size, and (3) double the true causal effect size. (CSV 1Â kb)
DOI: 10.6084/m9.figshare.c.3598943_d1.v1
title: Additional file 2: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels

description: CytoSpectre source code. This file contains the MATLAB (R2014a) source codes. (7Z 78 kb)
DOI: 10.6084/m9.figshare.c.3598943_d2.v1
title: Additional file 6: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels

description: Raw data from image degradation experiments. This file contains all numerical data from the image quality degradation experiments. (XLSX 19997 kb)
DOI: 10.6084/m9.figshare.c.3598946_d2.v1
title: Additional file 3: Table S2. of CTCF-mediated chromatin loops enclose inducible gene regulatory domains

description: Datasets used in and generated by this study. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3598943_d3.v1
title: Additional file 7: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels

description: Raw data from experiments with real images. This file contains all numerical data from the experiments with real images. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3598943_d4.v1
title: Additional file 8: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels

description: Raw data from FibrilTool experiments with synthetic images. This file contains all numerical data from the comparative experiments with FibrilTool using synthetic images. (XLSX 336 kb)
DOI: 10.6084/m9.figshare.c.3598946_d3.v1
title: Additional file 5: of CTCF-mediated chromatin loops enclose inducible gene regulatory domains

description: A custom Python script. (ZIP 7kb)
DOI: 10.6084/m9.figshare.c.3598943_d5.v1
title: Additional file 5: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels

description: Raw data from sensitivity experiments. This file contains all numerical data from the experiments evaluating the sensitivity of the results to changes in the values of adjustable parameters. (XLSX 8008 kb)
DOI: 10.6084/m9.figshare.c.3598943_d6.v1
title: Additional file 1: of CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels

description: CytoSpectre installer. This file contains the installation package for the Windows 7 (64-bit) deployed application. (EXE 10939 kb)
DOI: 10.6084/m9.figshare.c.3600224_d10.v1
title: Additional file 1: Table S1. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: Adult female Duroc RRBS and RNA-seq read depths. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3600272_d2.v1
title: Additional file 5: of Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest

description: Functional enrichment analysis GO terms for high VST genes based on PFam domains. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3600272_d3.v1
title: Additional file 3: of Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest

description: High VST regions with genome coordinates and gene identifiers relative to Cryptococcus gattii R265. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3600224_d12.v1
title: Additional file 20: Table S13. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: GO terms and KEGG pathways enriched for ASE. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3600272_d4.v1
title: Additional file 2: of Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest

description: Individual copy number estimates and VST for each 100Â bp bin relative to the Cryptococcus gattii R265 genome. (XLSX 49905 kb)
DOI: 10.6084/m9.figshare.c.3600272_d5.v1
title: Additional file 1: of Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest

description: NCBI Sequence Read Archive run accession numbers for whole-genome Illumina data of the 212 Cryptococcus gattii isolates. VGII subgroup classification based on Structure and DAPC analysis (where Kâ  =â  8) is provided where applicable. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3600224_d15.v1
title: Additional file 14: Table S12. of Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

description: Proportion of methylated (&gt;1Â %) non-CpG sites across chromosomes. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3601199_d4.v1
title: Additional file 4 of Predicting protein function via downward random walks on a gene ontology

description: Human_bp(NoTPR). This Excel Spreadsheet file includes true positive predictions, false positive predictions of the top 100 predictions made by dRW, dRW-kNN, ITSS, PILL and Naive on Human proteins annotated with Biological Process Ontology. (XLS 132 kb)
DOI: 10.6084/m9.figshare.28049720
title: Asparagus officinalis raw GC-MS files

description: Metabolite extraction from Asparagus officinalis leaf tissue
DOI: 10.6084/m9.figshare.c.3602420_d1.v1
title: Additional file 1: Table S1. of Reducing co-administration of proton pump inhibitors and antibiotics using a computerized order entry alert and prospective audit and feedback

description: Raw monthly data for the primary and secondary outcomes. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3602414_d3.v1
title: Additional file 3: of Metabolic characterization of the natural progression of chronic hepatitis B

description: Supplementary Table S2. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3602429_d1.v1
title: MOESM1 of Effects of elevated CO2 on photosynthetic traits of native and invasive C3 and C4 grasses

description: Additional file 1. (a) Mean Âą SE for individual species across CO2 concentrations for responses measured at 7 and 14 weeks, (b) mean Âą SE for individual species across CO2 concentrations for responses measured at 14 weeks only.