cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14662257.v1
title: Evolutionary Biology 2021 items

description: Anatomical networks, calibrated phylogeny, and brain size data for the manuscript <i><b>"Cranial anatomical integration and disparity among bones discriminate between primates and non-primate mammals"</b></i>
DOI: 10.21227/r4j2-hr84
title: USER TESTING RESULTS – MEASURING EFFECTIVENESS OF STATIC MAPS

description: The dataset includes information on the user testing results of the study about the effectiveness mesuerement odf the use of static maps andtheir banded versions. The main variables are (quantitative) : Completion time and success rates and quantitative (number of votes about the effectiveness of each map).
DOI: 10.25345/c57258
title: MassIVE MSV000088051 - Protein ID of the purified Chlamydomonas TOC-TIC supercomplex
title: Proteomic technology was used to identify the components of TOC-TIC supercomplex.
DOI: 10.5281/zenodo.5409716
title: Data for the manuscript entitled "AMOC variability and watermass transformations in the AWI climate model" by Sidorenko et al. 2021, submitted to JAMES

description: Data is stored in a SHELVE persistent storage as produced in Python 3.7.4. The visualisation example is provided in a Jupyter Python Notebook.
DOI: 10.5281/zenodo.5409715
title: Data for the manuscript entitled "AMOC variability and watermass transformations in the AWI climate model" by Sidorenko et al. 2021, submitted to JAMES

description: Data is stored in a SHELVE persistent storage as produced in Python 3.7.4. The visualisation example is provided in a Jupyter Python Notebook.
DOI: 10.6084/m9.figshare.16565982
title: Comparative genomics reveals molecular mechanisms underlying health and reproduction in cryptorchid mammals

description: One-to-one single copy protein-coding orthologs in 30 representative mammals (including <em>Homo sapiens, Gorilla gorilla, Papio anubis, Aotus nancymaae, Microcebus murinus, Mus musculus, Rattus norvegicus, Castor canadensis, Cavia porcellus, Chinchilla lanigera, Marmota marmota, Oryctolagus cuniculus, Orcinus orca, Delphinapterus leucas, Capra hircus, Sus scrofa, Equus caballus, Ceratotherium simum, Canis lupus familiaris, Enhydra lutris, Odobenus rosmarus, Neomonachus schauinslandi, Rousettus aegyptiacus, Desmodus rotundus, Condylura cristata, Loxodonta africana, Trichechus manatus, Choloepus didactylus, Phascolarctos cinereus, Ornithorhynchus anatinus</em>) were generated by OrthoFinder, an all-against-all BLASTP algorithm. In total, 5334 protein-coding sequences were generated. Further, codon-based alignments were generated using MACSE with default parameters. Poorly aligned regions and gaps were trimmed using Gblocks. Finally, 5333 alignments were generated (TTN was too long to align successfully).
DOI: 10.6084/m9.figshare.14608140
title: Effect of Three NR3C1 mutations in Pathogenesis of Pituitary ACTH Adenoma (Supplementary Table 1）

description: A panel containing 582 tumor-associated genes was used for next-generation sequencing in patients with ACTH adenomas.
DOI: 10.6084/m9.figshare.14608140.v1
title: Effect of Three NR3C1 mutations in Pathogenesis of Pituitary ACTH Adenoma (Supplementary Table 1）

description: A panel containing 582 tumor-associated genes was used for next-generation sequencing in patients with ACTH adenomas.
DOI: 10.6084/m9.figshare.14332580.v1
title: BTCH.zip

description: An improved global gross primary production dataset covering 1980–2018<br>
DOI: 10.5287/bodleian:6qxzjdxpd
title: Parsons et al 2021 - Supporting Data
DOI: 10.6084/m9.figshare.13363502.v4
title: Scalable Analysis of Multi-Modal Biomedical Data

description: Raw runtimes for the program performance for burden based analyses, driver gene analysis, and clinical exploratory programs. Also includes runtimes for skew and scalability experiments.
DOI: 10.6084/m9.figshare.13363502.v3
title: Scalable Analysis of Multi-Modal Biomedical Data

description: Raw runtimes for the program performance for burden based analyses, driver gene analysis, and clinical exploratory programs. Also includes runtimes for skew and scalability experiments.
DOI: 10.17894/ucph.4c8e8715-acb0-4d19-bb9a-28a4ffe99c75
title: Test6
DOI: 10.5281/zenodo.5411798
title: Fault trace data and supplementary table and figures of "Fault trace corrugation and segmentation as a measure of fault structural maturity"

description: Fault trace data and supplementary information to the paper "Fault trace corrugation and segmentation as a measure of fault structural maturity" by Manighetti I., Mercier A., and de Barros L., Sept. 2021
DOI: 10.5281/zenodo.5411797
title: Fault trace data and supplementary table and figures of "Fault trace corrugation and segmentation as a measure of fault structural maturity"

description: Fault trace data and supplementary information to the paper "Fault trace corrugation and segmentation as a measure of fault structural maturity" by Manighetti I., Mercier A., and de Barros L., Sept. 2021
DOI: 10.18112/openneuro.ds002731.v1.1.0
title: Multiple interactive memory representations underlie the induction of false memory
DOI: 10.5281/zenodo.5411994
title: Datasets used to illustrate the PPVD mashup protocol execution

description: Datasets used for the empirical evaluation of the privacy-preserving data mashup protocol. Three data sets can be found: Vertical partition of educational provider A (Input_DataPartition_A.csv) Vertical partition of educational provider B (Input_DataPartition_B.csv) Integrated and k-anonymized output dataset by the privacy-preserving data mashup protocol (Output_AnoymizedIntegratedDataset.csv)
description: The Spanish National Research Agency (AEI) funded this research through the project CREPES (ref. PID2020-115844RB-I00) with ERDF funds.
DOI: 10.5281/zenodo.5411993
title: Datasets used to illustrate the PPVD mashup protocol execution

description: Datasets used for the empirical evaluation of the privacy-preserving data mashup protocol. Three data sets can be found: Vertical partition of educational provider A (Input_DataPartition_A.csv) Vertical partition of educational provider B (Input_DataPartition_B.csv) Integrated and k-anonymized output dataset by the privacy-preserving data mashup protocol (Output_AnoymizedIntegratedDataset.csv)
description: The Spanish National Research Agency (AEI) funded this research through the project CREPES (ref. PID2020-115844RB-I00) with ERDF funds.
DOI: 10.6084/m9.figshare.16566216
title: A new map of permafrost distribution on the Tibetan Plateau (2017)

description: A new map of permafrost distribution on the Tibetan Plateau from Zou et al., 2017
DOI: 10.6084/m9.figshare.16566216.v1
title: A new map of permafrost distribution on the Tibetan Plateau (2017)

description: A new map of permafrost distribution on the Tibetan Plateau from Zou et al., 2017
DOI: 10.25625/dqptfq/jfnzbt
title: poster-hekksagon-2021.pdf

description: :unav
DOI: 10.25625/dqptfq/ncfcfm
title: poster-hekksagon-2021.pdf

description: :unav
DOI: 10.25625/dqptfq/qdlfdk
title: poster-hekksagon-2021.pdf

description: :unav
DOI: 10.25625/dqptfq
title: System Architecture for the integration, processing, and publishing of many heterogenous text resources

description: This poster is used in the Hekksagon conference.
DOI: 10.6084/m9.figshare.16566312
title: A new map of permafrost distribution on the Tibetan Plateau (2017)

description: A new map of permafrost distribution on the Tibetan Plateau from Zou et al., 2017 in https://poles.tpdc.ac.cn/en/data/0231c972-8460-4691-a187-70e4cc356f60/<br>ref:Zou, D., Zhao, L., Sheng, Y., Chen, J., Hu, G., Wu, T., et al. (2017). A new map of permafrost distribution on the Tibetan Plateau. <i>The Cryosphere, 11</i>(6), 2527-2542. https://doi.org/10.5194/tc-11-2527-2017 <br>
DOI: 10.6084/m9.figshare.16566312.v1
title: A new map of permafrost distribution on the Tibetan Plateau (2017)

description: A new map of permafrost distribution on the Tibetan Plateau from Zou et al., 2017 in https://poles.tpdc.ac.cn/en/data/0231c972-8460-4691-a187-70e4cc356f60/<br>ref:Zou, D., Zhao, L., Sheng, Y., Chen, J., Hu, G., Wu, T., et al. (2017). A new map of permafrost distribution on the Tibetan Plateau. <i>The Cryosphere, 11</i>(6), 2527-2542. https://doi.org/10.5194/tc-11-2527-2017 <br>
DOI: 10.5281/zenodo.5266542
title: TCGA WES processed by Demichelis Lab

description: Here we provide processed data of the TCGA WES collection related to the study by Ciani Y. et al, "Allele-specific informed genomic analysis identifies loss of heterozygosity as a common trait of impaired tumor-suppressive processes" that implements the SPICE pipeline. Processed data includes SNV/indels, genomic calls as allele specific copy number, and LOH/gene expression linear models results. For more information visit https://github.com/demichelislab/SPICE-pipeline
DOI: 10.5281/zenodo.5266541
title: TCGA WES processed by Demichelis Lab

description: Here we provide processed data of the TCGA WES collection related to the study by Ciani Y. et al, "Allele-specific informed genomic analysis identifies loss of heterozygosity as a common trait of impaired tumor-suppressive processes" that implements the SPICE pipeline. Processed data includes SNV/indels, genomic calls as allele specific copy number, and LOH/gene expression linear models results. For more information visit https://github.com/demichelislab/SPICE-pipeline
DOI: 10.6084/m9.figshare.16443308.v1
title: Table S3 from Evolutionary ecology of climacteric and non-climacteric fruits

description: Fleshy fruits can be divided between climacteric (CL, showing a typical rise in respiration and ethylene production with ripening after harvest) and non-climacteric (NC, showing no rise). However, despite the importance of the CL/NC traits in horticulture and the fruit industry, the evolutionary significance of the distinction remains untested. In this study, we tested the hypothesis that NC fruits, which ripen only on the plant, are adapted to tree dispersers (feeding in the tree), and CL fruits, which ripen after falling from the plant, are adapted to ground dispersers. A literature review of 276 reports of 80 edible fruits found a strong correlation between CL/NC traits and the type of seed disperser: fruits dispersed by tree dispersers are more likely to be NC, and those dispersed by ground dispersers are more likely to be CL. NC fruits are more likely to have red–black skin and smaller seeds (preferred by birds), and CL fruits to have green–brownish skin and larger seeds (preferred by large mammals). These results suggest that the CL/NC traits have an important but overlooked seed dispersal function, and CL fruits may have an adaptive advantage in reducing ineffective frugivory by tree dispersers by falling before ripening.
DOI: 10.6084/m9.figshare.16437550
title: A new ‘rauisuchian’ archosaur from the Middle Triassic Omingonde Formation (Karoo Supergroup) of Namibia

description: The Middle Triassic uppermost Omingonde Formation of Namibia records a fossil tetrapod fauna including stahleckeriid dicynodonts and probainognathian and traversodontid cynodonts, similar to other contemporary Gondwanan deposits. GSN F382 is a large predatory ‘rauisuchian’ archosaur from the uppermost Omingonde Formation that was originally identified as an erythrosuchid archosauriform. In this study, we provide a detailed anatomical description and phylogenetic analysis of the specimen and diagnose it as a new taxon, <i>Etjosuchus recurvidens</i>. <i>Etjosuchus</i> is a non-crocodylomorph loricatan, branching earlier than Rauisuchidae and Crocodylomorpha. The addition of this large-bodied carnivorous pseudosuchian archosaur to the uppermost Omingonde tetrapod assemblage reinforces its faunal similarity to other Middle to Late Triassic Gondwanan ecosystems such as those in the Santa Maria Formation of Brazil, the Chañares Formation of Argentina and the Manda Beds of Tanzania. http://zoobank.org/urn:lsid:zoobank.org:pub:F5035597-24E0-4DA5-B89D-D3CF8851A8FF
DOI: 10.6084/m9.figshare.16437550.v1
title: A new ‘rauisuchian’ archosaur from the Middle Triassic Omingonde Formation (Karoo Supergroup) of Namibia

description: The Middle Triassic uppermost Omingonde Formation of Namibia records a fossil tetrapod fauna including stahleckeriid dicynodonts and probainognathian and traversodontid cynodonts, similar to other contemporary Gondwanan deposits. GSN F382 is a large predatory ‘rauisuchian’ archosaur from the uppermost Omingonde Formation that was originally identified as an erythrosuchid archosauriform. In this study, we provide a detailed anatomical description and phylogenetic analysis of the specimen and diagnose it as a new taxon, <i>Etjosuchus recurvidens</i>. <i>Etjosuchus</i> is a non-crocodylomorph loricatan, branching earlier than Rauisuchidae and Crocodylomorpha. The addition of this large-bodied carnivorous pseudosuchian archosaur to the uppermost Omingonde tetrapod assemblage reinforces its faunal similarity to other Middle to Late Triassic Gondwanan ecosystems such as those in the Santa Maria Formation of Brazil, the Chañares Formation of Argentina and the Manda Beds of Tanzania. http://zoobank.org/urn:lsid:zoobank.org:pub:F5035597-24E0-4DA5-B89D-D3CF8851A8FF
DOI: 10.15161/oar.it/74064
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.5281/zenodo.5412345
title: LC-DAD separation of Kahweol and cafestol oleate and palmitate from coffee

description: Analysis of diterpene esters (kahweol oleate -KO; cafestol oleate -CO; kahweol palmitate -KP; cafestol palmitate -CP) by LC DAD in standards and coffees. <strong>Separation conditions: </strong> Coffee brews were extracted using 5 mL of diethyl ether. The mixture was vortexed for 2 min, and after centrifugation, the upper phase was transferred to a clean test tube. Next, the aqueous solution was re-extracted using diethyl ether, and the combined ether phase was washed with 5mL of 2 M NaCl solution followed by centrifugation (4000 rpm, 10 min. Finally, the clean ether phase was dried under an azote stream. Samples were kept at –22ºC until analysis using LC–DAD. Separation was achieved using a Purospher STAR LichroCART RP 18 end-capped (250 × 4 mm, 5 µm) column attached. Before injection, the dried extract was dissolved in 2.5 mL of acetonitrile and filtered through 0.45 µm filter membrane (PTFE, VWR, USA). Twenty microliters of sample were injected, and the separation was achieved using isocratic conditions for 35 min with the mobile phase made of acetonitrile/isopropanol (70:30, v/v) and pumped at 0.4 mL/min. A diode array detector, in the range of 200–400 nm, was used. After each run, the acquisition software exported data as a comma-separated-values format (EZChrom Elite 3.1.6). For the calibration curves, mixtures of the four diterpenes esters at similar concentrations were used in the range of 2 to 200 mg/L. Eight samples were prepared and run in duplicates <strong>Files: </strong> Data.mat: Matlab structure with, as fields:<br> &lt;Time&gt; : a 3751 length vector. Time axis in min<br> &lt;Wavelength&gt; : a 201 length vector, Wavelength of detection<br> &lt;Names_calibration&gt; : Name of the samples for calibrations<br> &lt;Data_calibration&gt; : a 3751x201x16 matrix with in first dimension the retention time, in second dimension the wavelength for detection and third dimension the calibration samples.<br> &lt;Data_samples&gt; : a 3751x201x4 matrix with in first dimension the retention time, in second dimension the wavelength for detection and third dimension the coffee samples.<br> &lt;Names_Samples&gt; : Name of the samples<br> &lt;Concentrations_calibration&gt;: Table with the real concentration (mg/L) used in the standard samples.
description: Funding: This work was financially supported by: (i) Base Funding - UIDB/00511/2020 of the Laboratory for Process Engineering, Environment, Bi-otechnology and Energy – LEPABE - funded by national funds through the FCT/MCTES (PIDDAC); (ii) Project POCI-01-0145-FEDER-029702, funded by FEDER funds through COMPETE2020 – Pro-grama Operacional Competitividade e Internacionalização (POCI) and by national funds (PID-DAC) through FCT/MCTES.
DOI: 10.5281/zenodo.5412344
title: LC-DAD separation of Kahweol and cafestol oleate and palmitate from coffee

description: Analysis of diterpene esters (kahweol oleate -KO; cafestol oleate -CO; kahweol palmitate -KP; cafestol palmitate -CP) by LC DAD in standards and coffees. <strong>Separation conditions: </strong> Coffee brews were extracted using 5 mL of diethyl ether. The mixture was vortexed for 2 min, and after centrifugation, the upper phase was transferred to a clean test tube. Next, the aqueous solution was re-extracted using diethyl ether, and the combined ether phase was washed with 5mL of 2 M NaCl solution followed by centrifugation (4000 rpm, 10 min. Finally, the clean ether phase was dried under an azote stream. Samples were kept at –22ºC until analysis using LC–DAD. Separation was achieved using a Purospher STAR LichroCART RP 18 end-capped (250 × 4 mm, 5 µm) column attached. Before injection, the dried extract was dissolved in 2.5 mL of acetonitrile and filtered through 0.45 µm filter membrane (PTFE, VWR, USA). Twenty microliters of sample were injected, and the separation was achieved using isocratic conditions for 35 min with the mobile phase made of acetonitrile/isopropanol (70:30, v/v) and pumped at 0.4 mL/min. A diode array detector, in the range of 200–400 nm, was used. After each run, the acquisition software exported data as a comma-separated-values format (EZChrom Elite 3.1.6). For the calibration curves, mixtures of the four diterpenes esters at similar concentrations were used in the range of 2 to 200 mg/L. Eight samples were prepared and run in duplicates <strong>Files: </strong> Data.mat: Matlab structure with, as fields:<br> &lt;Time&gt; : a 3751 length vector. Time axis in min<br> &lt;Wavelength&gt; : a 201 length vector, Wavelength of detection<br> &lt;Names_calibration&gt; : Name of the samples for calibrations<br> &lt;Data_calibration&gt; : a 3751x201x16 matrix with in first dimension the retention time, in second dimension the wavelength for detection and third dimension the calibration samples.<br> &lt;Data_samples&gt; : a 3751x201x4 matrix with in first dimension the retention time, in second dimension the wavelength for detection and third dimension the coffee samples.<br> &lt;Names_Samples&gt; : Name of the samples<br> &lt;Concentrations_calibration&gt;: Table with the real concentration (mg/L) used in the standard samples.
description: Funding: This work was financially supported by: (i) Base Funding - UIDB/00511/2020 of the Laboratory for Process Engineering, Environment, Bi-otechnology and Energy – LEPABE - funded by national funds through the FCT/MCTES (PIDDAC); (ii) Project POCI-01-0145-FEDER-029702, funded by FEDER funds through COMPETE2020 – Pro-grama Operacional Competitividade e Internacionalização (POCI) and by national funds (PID-DAC) through FCT/MCTES.
DOI: 10.6084/m9.figshare.16566396
title: Appendix 2: Volcaniclastic deposits and sedimentation processes around volcanic ocean islands: the central Azores

description: Volcanic glass compositions
DOI: 10.6084/m9.figshare.16566399
title: Appendix 4: Volcaniclastic deposits and sedimentation processes around volcanic ocean islands: the central Azores

description: Total organic carbon, total nitrogen, and carbon isotopes
DOI: 10.6084/m9.figshare.16566402
title: Appendix 3: Volcaniclastic deposits and sedimentation processes around volcanic ocean islands: the central Azores

description: Volcanic grain morphometric measurements
DOI: 10.6084/m9.figshare.16566399.v1
title: Appendix 4: Volcaniclastic deposits and sedimentation processes around volcanic ocean islands: the central Azores

description: Total organic carbon, total nitrogen, and carbon isotopes
DOI: 10.6084/m9.figshare.16566396.v1
title: Appendix 2: Volcaniclastic deposits and sedimentation processes around volcanic ocean islands: the central Azores

description: Volcanic glass compositions
DOI: 10.6084/m9.figshare.16566402.v1
title: Appendix 3: Volcaniclastic deposits and sedimentation processes around volcanic ocean islands: the central Azores

description: Volcanic grain morphometric measurements
DOI: 10.5281/zenodo.4864755
title: DCASE 2021 Task 5: Few-shot Bioacoustic Event Detection Evaluation Set

description: <strong>General Description</strong> The evaluation set for task 5 of DCASE 2021 "Few-shot Bioacoustic Event Detection" consists of 31 audio files acquired from different bioacoustic sources. The first 5 annotations are provided for each file, with events marked as positive (POS) for the class of interest. This dataset is to be used for evaluation purposes during the task and the rest of the annotations will be released after the end of the DCASE 2021 challenge (July 1st). <strong>Folder Structure</strong> <em>Evaluation_Set.zip</em> |__Evaluation_Set/ |___DC/ |____*.wav |____*.csv |___ME/ |____*.wav |____*.csv |___ML/ |____*.wav |____*.csv <em>Evaluation_Set_Audio.zip</em> has the same structure but contains only the *.wav files. <em>Evaluation_Set_Annotations.zip</em> has the same structure but contains only the *.csv files The subfolders denote different recording sources and there may or may not be overlap between classes of interest from different wav files. <strong>Annotation structure</strong> Each line of the annotation csv represents an event in the audio file. The column descriptions are as follows:<br> [ Audiofilename, Starttime, Endtime, Q ] <strong>Development Set</strong> The development set for the same task can be found at: https://doi.org/10.5281/zenodo.4543504 <strong>Open Access</strong> This dataset is available under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.<br> <strong>Contact info</strong> Please send any feedback or questions to:<br> Veronica Morfi: g.v.morfi@qmul.ac.uk
DOI: 10.6084/m9.figshare.16566408
title: Dueholm2021a_data.zip

description: MiDAS 4: A global catalogue of full-length 16S rRNA gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants<br>Raw data for analysis in R