cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/inscriptifact-ouc111108897
title: Contract with list of merchandise, UT 1599-2

description: [Text Description:] Contract with list of merchandise: cargo of a canal boat. ❧ [Text or Publication Number Note:] UT 1599-2 ❧ [Excavation Description:] Jokha ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Rectangular clay tablet, uniform beige color with white and pink. LABEL: "1599" in black ink, "2" in red ink. Broken and repaired. 10.5 x 4.5cm. ❧ [Physical Object Note:] Reign of Amar-Sin, third dynastic king.
DOI: 10.25825/fk2/kmqmgq
title: Harmonized Household Health Surveys, HHHS 2006, Sudan

description: The Sudan Household Health Survey (SHHS), conducted in 2006, is the first household survey covering Northern and Southern Sudan in two decades. The primary objectives of the 2006 Sudan Household Health Survey were: - To provide up-to-date information for assessing the situation of children and women in Sudan. - To furnish data needed for monitoring progress toward goals established by the Millennium Development Goals: the goals of “A World Fit For Children”, “Programme of Action” adopted at the “International Conference on Population and Development (ICPD)”, and other internationally agreed upon goals, as a basis for action. - To contribute to the improvement of data and monitoring systems in Sudan and to strengthen technical expertise in the design, implementation, and analysis of such systems. - To strengthen and build the institutional capacity of government partners for the upcoming 2008 Census and large scale surveys. The raw survey data provided by the Statistical Office were then harmonized by the Economic Research Forum, to create a comparable version with the 2010 Household Health Survey in Sudan. Harmonization at this stage only included unifying variables' names, labels and some definitions. See: Sudan 2006 & 2010- Variables Mapping & Availability Matrix.pdf provided in the external resources for further information on the mapping of the original variables on the harmonized ones, in addition to more indications on the variables' availability in both survey years and relevant comments. The data may be accessed through the ERF Data Portal: http://www.erfdataportal.com/index.php/catalog/103
DOI: 10.25549/inscriptifact-ouc111108894
title: Contract with list of merchandise, UT 1599-2

description: [Text Description:] Contract with list of merchandise: cargo of a canal boat. ❧ [Text or Publication Number Note:] UT 1599-2 ❧ [Excavation Description:] Jokha ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Rectangular clay tablet, uniform beige color with white and pink. LABEL: "1599" in black ink, "2" in red ink. Broken and repaired. 10.5 x 4.5cm. ❧ [Physical Object Note:] Reign of Amar-Sin, third dynastic king.
DOI: 10.15468/dl.qmmnvg
title: Occurrence Download

description: A dataset containing 2344 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pergularia daemia (Forssk.) Chiov."
 ]
}

 The dataset includes 2344 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189285-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111284718
title: Tel Dan Inscription, IAA 1993-3162, House of David Inscription

description: [Text Description:] Royal Stela; Victory Stele? ❧ [Text or Publication Number Note:] IAA 1996-187, IAA 1993-3162 ❧ [Excavation Description:] Avraham Biran excavations, Area A, 8th c. debris. A: 1993, base of wall; B1: 1994, base of wall; B2: 1994, pavement ❧ [Medium:] Stone ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Three pieces of basalt stone; A: 32 x 22 cm; B1: 5.9 x 4.3 cm; B2: 3.5 x 2.4 cm ❧ [Physical Object Note:] A: 13 lines, B1 & B2: 8 lines; letters separated by dots ❧
DOI: 10.25549/inscriptifact-ouc111108591
title: Contract with list of merchandise, UT 1599-2

description: [Text Description:] Contract with list of merchandise: cargo of a canal boat. ❧ [Text or Publication Number Note:] UT 1599-2 ❧ [Excavation Description:] Jokha ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Rectangular clay tablet, uniform beige color with white and pink. LABEL: "1599" in black ink, "2" in red ink. Broken and repaired. 10.5 x 4.5cm. ❧ [Physical Object Note:] Reign of Amar-Sin, third dynastic king.
DOI: 10.15468/dl.b3km32
title: Occurrence Download

description: A dataset containing 2228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((104.20496 31.56673,86.86922 31.03363,-21.15536 15.70247,5.35394 -25.65748,147.99358 -43.07274,176.43559 -30.76932,166.46322 -2.69213,104.20496 31.56673))",
 "TaxonKey is Mezoneuron Desf."
 ]
}

 The dataset includes 2228 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156957-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111108592
title: Contract with list of merchandise, UT 1599-2

description: [Text Description:] Contract with list of merchandise: cargo of a canal boat. ❧ [Text or Publication Number Note:] UT 1599-2 ❧ [Excavation Description:] Jokha ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Rectangular clay tablet, uniform beige color with white and pink. LABEL: "1599" in black ink, "2" in red ink. Broken and repaired. 10.5 x 4.5cm. ❧ [Physical Object Note:] Reign of Amar-Sin, third dynastic king.
DOI: 10.25549/inscriptifact-ouc111284686
title: Tel Dan Inscription, IAA 1993-3162, House of David Inscription

description: [Text Description:] Royal Stela; Victory Stele? ❧ [Text or Publication Number Note:] IAA 1996-187, IAA 1993-3162 ❧ [Excavation Description:] Avraham Biran excavations, Area A, 8th c. debris. A: 1993, base of wall; B1: 1994, base of wall; B2: 1994, pavement ❧ [Medium:] Stone ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Three pieces of basalt stone; A: 32 x 22 cm; B1: 5.9 x 4.3 cm; B2: 3.5 x 2.4 cm ❧ [Physical Object Note:] A: 13 lines, B1 & B2: 8 lines; letters separated by dots ❧
DOI: 10.15468/dl.7nu9uh
title: Occurrence Download

description: A dataset containing 15117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-80.09653 34.6544,-65.96747 34.6544,-65.96747 43.81919,-67.8768 51.45652,-80.09653 43.81919,-80.09653 34.6544))",
 "TaxonKey is Erechtites hieraciifolius (L.) Raf. ex DC."
 ]
}

 The dataset includes 15117 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015028-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6g782h
title: Occurrence Download

description: A dataset containing 1652 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Tanacetum macrophyllum (Waldst. & Kit.) Sch.Bip.)"
 ]
}

 The dataset includes 1652 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015029-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emceuw
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "DatasetKey is one of (CSIC-Real Jardín Botánico-Anthos. Sistema de Información de las Plantas de España, Banco de Datos de la Biodiversidad de la Comunitat Valenciana, Flora vascular de Mallorca, Illes Balears, CSIC-Real Jardín Botánico-Colección de Plantas Vasculares (MA))",
 {
 "or" : [
 "Geometry POLYGON((3.13386 42.22209,3.23216 42.22209,3.23216 42.23848,3.13386 42.23848,3.13386 42.22209))",
 "Geometry POLYGON((4.3943 42.25268,0.40085 42.87816,0.04801 41.98003,0.60934 40.15972,4.3943 42.25268))"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Senecio angulatus L.fil."
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015030-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ur3gxy
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Spain",
 "DatasetKey is one of (Banco de Datos de la Biodiversidad de la Comunitat Valenciana, Colección de plantas vasculares del herbario de la Universitat de València (VAL), CSIC-Real Jardín Botánico-Anthos. Sistema de Información de las Plantas de España, Flora vascular de Mallorca, Illes Balears)",
 "Geometry POLYGON((0.4427 42.93634,0.16359 41.37507,0.50376 40.71219,0.65203 40.43308,2.96341 41.07852,3.41697 42.56129,0.4427 42.93634))",
 "OccurrenceStatus is Present",
 "TaxonKey is Senecio angulatus L.fil."
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015031-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5aqsa
title: Occurrence Download

description: A dataset containing 805 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Tanacetum coccineum (Willd.) Grierson)"
 ]
}

 The dataset includes 805 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015033-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwwnpu
title: Occurrence Download

description: A dataset containing 3793 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippocampus hippocampus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3793 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015032-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3yk6u
title: Occurrence Download

description: A dataset containing 4278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cavia aperea Erxleben, 1777"
 ]
}

 The dataset includes 4278 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015034-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14249532
title: Dataset underlying publication "Optical-comb-based frequency stability transfer across the spectrum with a multi-channel FPGA

description: This archive contains datasets underlying plots of the publication "Optical-comb-based frequency stability transfer across the spectrum with a multi-channel FPGA".

Datasets contain header, and a minimum script to reproduce figures is provided

This work was supported by the European Metrology Program for Innovation and Research (EMPIR), Project 20FUN08 Nextlasers, whichreceived funding from the EMPIR programme cofinanced by the Participating States and from the European Union’s Horizon 2020 research and innovation program.
DOI: 10.5281/zenodo.14249533
title: Dataset underlying publication "Optical-comb-based frequency stability transfer across the spectrum with a multi-channel FPGA

description: This archive contains datasets underlying plots of the publication "Optical-comb-based frequency stability transfer across the spectrum with a multi-channel FPGA".

Datasets contain header, and a minimum script to reproduce figures is provided

This work was supported by the European Metrology Program for Innovation and Research (EMPIR), Project 20FUN08 Nextlasers, whichreceived funding from the EMPIR programme cofinanced by the Participating States and from the European Union’s Horizon 2020 research and innovation program.
DOI: 10.15468/dl.azh5nm
title: Occurrence Download

description: A dataset containing 15620 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acronychia J.R.Forst. & G.Forst."
 ]
}

 The dataset includes 15620 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015035-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2j76rx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Lychnis yunnanensis Baker fil.)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015037-241126133413365/datasets/export for details.
DOI: 10.25838/d5p-65
title: Loss of Bmal1 impairs the glutamatergic light input to the SCN in mice

description: Introduction: Glutamate represents the dominant neurotransmitter that conveys the light information to the brain, including the suprachiasmatic nucleus (SCN), the central pacemaker for the circadian system. The neuronal and astrocytic glutamate transporters are crucial for maintaining efficient glutamatergic signaling. In the SCN, glutamatergic nerve terminals from the retina terminate on vasoactive intestinal polypeptide (VIP) neurons, which are essential for circadian functions. Up-to-date, little is known about the role of the core circadian clock gene, Bmal1, in glutamatergic neurotransmission of light signal to various brain regions. Methods: The aim of this study was to further elucidate the role of Bmal1 in glutamatergic neurotransmission from the retina to the SCN. We therefore examined the spontaneous rhythmic locomotor activity, neuronal and glial glutamate transporters, as well as the ultrastructure of the synapse between the retinal ganglion cells (RGCs) and the SCN in adult male Bmal1-/- mice. Results: We found that the deletion of Bmal1 affects the light-mediated behavior in mice, decreases the retinal thickness and affects the vesicular glutamate transporters (vGLUT1,2) in the retina. Within the SCN, the immunoreaction of vGLUT1,2, glial glutamate transporters (GLAST) and VIP was decreased while the glutamate concentration was elevated. At the ultrastructure level, the presynaptic terminals were enlarged and the distance between the synaptic vesicles and the synaptic cleft was increased, indicative of a decrease in the readily releasable pool at the excitatory synapses in Bmal1-/-. Conclusion: Our data suggests that Bmal1 deletion affects the glutamate transmission at the tripartite synapse between the ipRGCs and the VIP neurons in the SCN and affects the behavioral responses to light.
DOI: 10.25838/d5p-66
title: Data for "TopEC: Improved classification of enzyme function by a localized 3D protein descriptor and 3D Graph Neural Networks"

description: Accurately annotating molecular function of enzymes remains challenging. Computational methods can aid in this and allow for high-throughput annotation. Tools available for inferring enzyme function from general sequence, fold, or evolutionary information are generally successful. However, they can lead to misclassification if for certain sequences a deviation in local structural features influences the function. Here, we present TopEC, a 3D graph neural network based on a localized 3D descriptor to learn chemical reactions of enzymes from (predicted) enzyme structures and predict Enzyme Commission (EC) classes. Using the message passing frameworks from SchNet and DimeNet++, we include distance and angle information to improve the predictive performance compared to regular 2D graph neural networks. We obtained significantly improved EC classification prediction (F-score: 0.72) to 2D GNNs, without fold bias at residue and atomic resolutions and trained networks that can classify both experimental and computationally generated enzyme structures for a vast functional space (&gt; 800 ECs). Our model is robust to uncertainties in binding site locations and similar functions in distinct binding sites. By investigating the importance of each graph node to the predictive performance, we see that TopEC networks learn from an interplay between biochemical features and local shape-dependent features. TopEC is available as a repository, including accompanying data, on github: https://github.com/IBG4-CBCLab/TopEC. The data in this repository is available under the CC-BY-NC-SA 4.0 license.
DOI: 10.5281/zenodo.14266166
title: Missing file of CNRM-ALADIN63 simulation: va100m_EUR-11_CNRM-CERFACS-CNRM-CM5_rcp85_r1i1p1_CNRM-ALADIN63_v2_1hr for year 2047

description: This file comes from the CNRM-ALADIN63 simulation driven by CNRM-CM5_rc85_r1i1p1 over the EURO-CORDEX domain (EUR-11). It was originally missing on ESGF, and unfortunately corrupted on CNRM servers. After investigation, we found that the problem concerns only one time step of the file : 2047-03-01T20:00:00.

As we have no other version of this file, we publish here the data for all the other time steps in the year 2047, with these two separate files covering respectively : 



the period before 2047-03-01T20:00:00 (va100m_EUR-11_CNRM-CERFACS-CNRM-CM5_rcp85_r1i1p1_CNRM-ALADIN63_v2_1hr_204701010100-204703011900.nc) 

the period after 2047-03-01T20:00:00 (va100m_EUR-11_CNRM-CERFACS-CNRM-CM5_rcp85_r1i1p1_CNRM-ALADIN63_v2_1hr_204703012100-204801010000.nc).
DOI: 10.5281/zenodo.14266167
title: Missing file of CNRM-ALADIN63 simulation: va100m_EUR-11_CNRM-CERFACS-CNRM-CM5_rcp85_r1i1p1_CNRM-ALADIN63_v2_1hr for year 2047

description: This file comes from the CNRM-ALADIN63 simulation driven by CNRM-CM5_rc85_r1i1p1 over the EURO-CORDEX domain (EUR-11). It was originally missing on ESGF, and unfortunately corrupted on CNRM servers. After investigation, we found that the problem concerns only one time step of the file : 2047-03-01T20:00:00.

As we have no other version of this file, we publish here the data for all the other time steps in the year 2047, with these two separate files covering respectively : 



the period before 2047-03-01T20:00:00 (va100m_EUR-11_CNRM-CERFACS-CNRM-CM5_rcp85_r1i1p1_CNRM-ALADIN63_v2_1hr_204701010100-204703011900.nc) 

the period after 2047-03-01T20:00:00 (va100m_EUR-11_CNRM-CERFACS-CNRM-CM5_rcp85_r1i1p1_CNRM-ALADIN63_v2_1hr_204703012100-204801010000.nc).
DOI: 10.15468/dl.xgvrkn
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Lychnis viscaria subsp. atropurpurea (Griseb.) Chater)"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015039-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25505/fiz.icsd.cc1xg1s6
title: CSD 1771178: Experimental Crystal Structure Determination

description: Related Article: Matthias Conrad , Christoph Pohling , Holger Webert, Bernd Harbrecht|2006|Z.Krist.Cryst.Mater.|221|349|doi:10.1524/zkri.2006.221.5-7.349
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc1xg1t7
title: CSD 1771179: Experimental Crystal Structure Determination

description: Related Article: Matthias Conrad , Christoph Pohling , Holger Webert, Bernd Harbrecht|2006|Z.Krist.Cryst.Mater.|221|349|doi:10.1524/zkri.2006.221.5-7.349
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5683/sp2/58smur
title: Ingestion of Lactobacillus rhamnosus modulates chronic stress-induced feather pecking in chickens

description: Feather pecking (FP) is a stress-induced neuropsychological disorder of birds. Intestinal dysbiosis and inflammation are common traits of these disorders. FP is, therefore, proposed to be a behavioral consequence of dysregulated communication between the gut and the brain. Probiotic supplementation represents a promising new therapeutic to mitigate widespread FP. We monitored FP, gut microbiota composition, immune markers and amino acids related to the production of neurochemicals with Lactobacillus rhamnosus supplement (Lacto) or a placebo in laying hens. Data demonstrate that, when stressed, the incidence of FP increased significantly, however, Lacto prevented this increase. Lacto showed strong immunological effects by increasing the regulatory T cell population of the spleen and the cecal tonsils, in addition to limiting cecal microbiota dysbiosis. Despite minimal changes of aromatic amino acid levels, data suggest that catecholaminergic circuits may be an interesting target for further studies. Overall, our findings provide the first data supporting the use of a single-strain probiotic to reduce stress-induced FP in chickens and has promise to improve the welfare of domestic birds.
DOI: 10.15468/dl.dfshjj
title: Occurrence Download

description: A dataset containing 452 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-108.26965 -7.31371,-51.73035 -7.31371,-51.73035 15.31371,-108.26965 15.31371,-108.26965 -7.31371))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eumaeus godartii (Boisduval, 1870)"
 ]
}

 The dataset includes 452 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015040-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.