cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yendje
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vitis vinifera",
 "Country is Malta",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026151-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aftvw7
title: Occurrence Download

description: A dataset containing 79161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations, Tropicos MO Specimen Data, USAC, CECON, Herbario USCG, Field Museum of Natural History (Zoology) Mammal Collection, A global database for the distributions of crop wild relatives)",
 "Geometry POLYGON((-91.09013 14.67441,-90.78038 14.67441,-90.78038 14.88498,-91.09013 14.88498,-91.09013 14.67441))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 79161 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026125-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7gwbx
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "GadmGid is COL.15_2",
 "TaxonKey is Podocnemis lewyana"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026153-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fanar9
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Engraulicypris bredoi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025495-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4bbj3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathytroctes Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.0031 -15.9691,43.978 -16.1504,44.9648 -16.1504,44.9648 -15.5455,44.7261 -15.708,44.2309 -15.7446,44.0031 -15.9691))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010388-250525065834625/datasets/export for details.
DOI: 10.5287/ora-2n7r4qd7g
title: Approaching the radiative limits for wide bandgap perovskite solar cells using fullerene blend electron transport interlayers

description: Data was acquired according to the methods section of this publication. Data files require Origin to process.
DOI: 10.15468/dl.az6s3x
title: Occurrence Download

description: A dataset containing 3183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United Kingdom of Great Britain and Northern Ireland, Ireland, France, Norway, Netherlands, Denmark, Brazil, Canada, Australia, New Zealand, Chile, United States of America, Guernsey)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lamna nasus"
 ]
}

 The dataset includes 3183 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025810-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/drljj4
title: Raw data corresponding to "Observation of Montgomery self-imaging effect in free space"

description: Raw data corresponding to "Observation of Montgomery self-imaging effect in free space"
DOI: 10.5061/dryad.r5d10
title: Data from: Model adequacy and microevolutionary explanations for stasis in the fossil record

description: Long-term phenotypic stasis is frequently observed in the fossil record,
 but not readily predicted from microevolutionary theory. To test competing
 explanations for stasis on macroevolutionary time scales we need reliably
 estimated parameters from appropriate evolutionary models that adequately
 describe the evolutionary trait dynamics. Here, we develop tests to assess
 the adequacy of the most commonly used stasis model in evolutionary
 biology and apply them to time series of phenotypic traits from fossil
 lineages. Of the 572 fossil time series we analyzed from the literature,
 263 times series showed a better fit to the stasis model relative to
 alternative models, but only 172 of those fitted the stasis model both in
 relative and absolute terms. The estimated trait variances from these 172
 time series do not correlate with rough proxies of effective population
 size. Our preliminary investigation of the fixed-optimum hypothesis hence
 fails to give empirical support to the idea that genetic drift around a
 constant trait optimum is an explanation for stasis in the fossil record.
 We argue that optima following stationary processes on the adaptive
 landscape is a viable hypothesis for stasis that needs further
 investigation. We end by discussing how investigations of model adequacy
 can be a valuable approach for increasing our understanding of the
 dynamics of the adaptive landscape on macroevolutionary time scales.
description: fossil time
 seriesZip file contains all
 fossil time series analyzed in the paper.R
 scriptsZip file contains R
 scripts for redoing all analyses in the paper.TableS1Table containing detailed information (model output, parameter estimates etc.) for each fossil time series analyzed in the paper. Table also contains sources (references) for all time series.
DOI: 10.5061/dryad.f180j
title: Data from: Time-lag in responses of birds to Atlantic Forest fragmentation: restoration opportunity and urgency

description: There are few opportunities to evaluate the relative importance of
 landscape structure and dynamics upon biodiversity, especially in highly
 fragmented tropical landscapes. Conservation strategies and species risk
 evaluations often rely exclusively on current aspects of landscape
 structure, although such limited assumptions are known to be misleading
 when time-lag responses occur. By relating bird functional-group richness
 to forest patch size and isolation in ten-year intervals (1956, 1965,
 1978, 1984, 1993 and 2003), we revealed that birds with different
 sensitivity to fragmentation display contrasting responses to landscape
 dynamics in the Brazilian Atlantic Forest. For non-sensitive groups, there
 was no time-lag in response: the recent degree of isolation best explains
 their variation in richness, which likely relates to these species’
 flexibility to adapt to changes in landscape structure. However, for
 sensitive bird groups, the 1978 patch area was the best explanatory
 variable, providing evidence for a 25-year time-lag in response to habitat
 reduction. Time-lag was more likely in landscapes that encompass large
 patches, which can support temporarily the presence of some sensitive
 species, even when habitat cover is relatively low. These landscapes
 potentially support the most threatened populations and should be
 priorities for restoration efforts to avoid further species loss. Although
 time-lags provide an opportunity to counteract the negative consequences
 of fragmentation, it also reinforces the urgency of restoration actions.
 Fragmented landscapes will be depleted of biodiversity if landscape
 structure is only maintained, and not improved. The urgency of restoration
 action may be even higher in landscapes where habitat loss and
 fragmentation history is older and where no large fragment remained to act
 temporarily as a refuge.
description: Maps from Pontal do
 ParanapanemaThis file contains maps
 in shapefile format from Pontal do Paranapanema from years 1956, 1965,
 1978, 1984, 1993 and 2003.PontalMaps.zipBird data and Landscape metricsThis file contains the dependent and independent data from the manuscript. The independent data correspond to the landscape metrics (Area and degree of Proximity) from the years 1978, 1984 and 2003 for each studied patch. And the dependent data are the richness of bird groups observed in each patch.
DOI: 10.5061/dryad.8t8h54h
title: Data from: Anatomical and ontogenetic reassessment of the Ediacaran frond Arborea arborea and its placement within total group Eumetazoa

description: Organisms in possession of a frondose body plan are amongst the oldest and
 most enigmatic members of the soft‐bodied Ediacaran macrobiota. Appraisal
 of specimens from the late Ediacaran Ediacara Member of South Australia
 reveals that the frondose taxon Arborea arborea probably possessed a
 fluid‐filled holdfast disc, the size and form of which could vary within
 populations. Mouldic preservation of internal anatomical features provides
 evidence for tissue differentiation, and for bundles of tubular structures
 within the stalk of the organism. These structures connect in a fascicled
 arrangement to individual lateral branches, before dividing further into
 individual units housed on those branches. The observed fascicled
 branching arrangement, which seemingly connects individual units to the
 main body of the organism, is consistent with a biologically modular
 construction for Arborea, and raises the possibility of a colonial
 organization. In conjunction with morphological characters previously
 recognized by other authors, including apical‐basal and front‐back
 differentiation, we propose that to the exclusion of all alternative known
 possibilities, Arborea can be resolved as a total group eumetazoan.
description: Dunn et al.
 Supplementary FiguresSupplementary figures
 describing the locality and stratigraphic context for specimens described
 in this article, as well as providing further field specimens of Arborea
 arborea.
DOI: 10.5061/dryad.q2n8p
title: Data from: Forest disturbance accelerates thermophilization of understory plant communities

description: 1. Climate change is likely to shift plant communities towards species
 from warmer regions, a process termed “thermophilization.” In forests,
 canopy disturbances such as fire may hasten this process by increasing
 temperature and moisture stress in the understory, yet little is known
 about the mechanisms that might drive such shifts, or the consequences of
 these processes for plant diversity. 2. We sampled understory vegetation
 across a gradient of disturbance severity from a large-scale natural
 experiment created by the factorial combination of forest thinning and
 wildfire in California. Using information on evolutionary history and
 functional traits, we tested the hypothesis that disturbance severity
 should increase community dominance by species with southern-xeric
 biogeographic affinities. We also analyzed how climatic productivity
 mediates the effect of disturbance severity, and quantified the functional
 trait response to disturbance, to investigate potential mechanisms behind
 thermophilization. 3. The proportion of north-temperate flora decreased,
 while the proportion of southern-xeric flora increased, with greater
 disturbance severity and less canopy closure. Disturbance caused a greater
 reduction of north-temperate flora in productive (wetter) forests, while
 functional trait analyses suggested that species colonizing after severe
 disturbance may be adapted to increased water stress. Forests with
 intermediate disturbance severity, where abundances of northern and
 southern species were most equitable, had the highest stand-scale
 understory diversity. 4. Synthesis: Canopy disturbance is likely to
 accelerate plant community shifts towards species from warmer regions, via
 its effects on understory microclimate at small scales. Understory
 diversity can be enhanced by intermediate disturbance regimes that promote
 the coexistence of species with different biogeographic affinities.
description: MasterPlotDataData on the plot environment that was sampled for this study. Contains metadata.TotalDiversityDataA plot X species matrix with percent cover, standardized to 2 years post fire in most cases. Contains metadata.UniqueSpeciesA list of species in the study, containing information for each specieson biogeographic affinity, leaf traits, life form, and dispersal syndromes. Metadata included.
DOI: 10.15468/j4bj7y
title: Houston Museum of Natural Science, Mammalogy Collection

description: The mammal collection of the Houston Museum of Natural Science has an emphasis on the mammals of Texas, with a focus on the Gulf Coast. The collection also includes species from Africa, Asia, South and Central America, and Australia.
DOI: 10.5061/dryad.t7g11
title: Data from: Differential responses of marine communities to natural and anthropogenic changes

description: Responses of ecosystems to environmental changes vary greatly across
 habitats, organisms, and observational scales. The Quaternary fossil
 record of the Po Basin demonstrates that marine communities of Northern
 Adriatic reemerged unchanged following the most recent glaciation, which
 lasted ~100,000 years. The Late Pleistocene and Holocene interglacial
 ecosystems were both dominated by the same species, species turnover rates
 approximated predictions of resampling models of a homogenous system, and
 comparable bathymetric gradients in species composition, sample-level
 diversity, dominance, and specimen abundance were observed in both time
 intervals. The interglacial Adriatic ecosystems appear to have been
 impervious to natural climate change either due to their persistence
 during those long-term perturbations or their resilient recovery during
 interglacial phases of climate oscillations. In contrast, present-day
 communities of Northern Adriatic differ notably from their Holocene
 counterparts. The recent ecosystem shift stands in contrast to the
 long-term endurance of interglacial communities in face of climate-driven
 environmental changes.
description: Abundance
 dataSpecies-level abundance
 data for Quaternary core samples from Po Plain, Italy. Columns are species
 and rows are samples. For additional information about this file and
 related datasets please contact
 PoPlainData1.csv
DOI: 10.5061/dryad.j5bf8
title: Data from: Determining the phylogenetic and phylogeographic origin of highly pathogenic avian influenza (H7N3) in Mexico

description: Highly pathogenic (HP) avian influenza virus (AIV) H7N3 outbreaks occurred
 3 times in the Americas in the past 10 years and caused severe economic
 loss in the affected regions. In June/July 2012, new HP H7N3 outbreaks
 occurred at commercial farms in Jalisco, Mexico. Outbreaks continued to be
 identified in neighbouring states in Mexico till August 2013. To explore
 the origin of this outbreak, time resolved phylogenetic trees were
 generated from the eight segments of full-length AIV sequences in North
 America using BEAST. Location, subtype, avian host species and
 pathogenicity were modelled as discrete traits upon the trees using
 continuous time Markov chains. A further joint analysis among segments was
 performed using a hierarchical phylogenetic model (HPM) which allowed
 trait rates (location, subtype, host species) to be jointly inferred
 across different segments. The complete spatial diffusion process was
 visualised through virtual globe software. Our result indicated the Mexico
 HP H7N3 originated from the large North America low pathogenicity AIV pool
 through complicated reassortment events. Different segments were
 contributed by wild waterfowl from different N. American flyways. Five of
 the eight segments (HA, NA, NP, M, NS) were introduced from wild birds
 migrating along the central North American flyway, and PB2, PB1 and PA
 were introduced via the western North American flyway. These results
 highlight a potential role for Mexico as a hotspot of virus reassortment
 as it is where wild birds from different migration routes mix during the
 winter.
description: Maximum likelihood and
 Bayesian phylogenetic treesTree files named as
 “RAxML_PB2.tre” et al. are maximum likelihood (ML) trees of six internal
 segments (PB2, PB1, PA, NP, M and NS) composed of the same 2343 North
 America AIV strains, which were reconstructed using RAxML v7.04. In each
 ML tree, the Mexico H7N3 strains are colored in red, and the lineage in
 which H7N3 Mexico fell is colored in blue; Tree files named as
 “HA.mcc.tre” et al. are temporally structured maximum clade credibility
 (mcc) time-scaled phylogenetic trees of all eight segments, which were
 generated using Beast V 1.7.3 and annotated with ancestral state changes
 (A: host order; B: host species; C: flyway; D: state/province; E: subtype)
 recovered from the discrete trait analyses. In each mcc tree, the branches
 are colored according to the trait state in the tree nodes. All tree files
 can be visualized in FigTree V 1.4.0.
DOI: 10.5061/dryad.2320n
title: Data from: Evolution of differential maternal age effects on male and female offspring development and longevity

description: 1. Maternal age effects on life-history traits, including longevity, are
 widespread and can be seen as a manifestation of ageing. However, little
 is known about how maternal lifespan may influence the maternal age
 effect. At a given chronological age, a long-lived parent may be at a
 younger biological age than a short-lived parent, and thus have a less
 severe parental age effect. However, earlier work using experimentally
 evolved short- and long-lived lines did not support this hypothesis. 2. We
 scored developmental time and longevity of 14995 individual seed beetles,
 Callosobruchus maculatus derived from replicate short-lived and long-lived
 lines created via artificial selection on male lifespan. 3. Offspring from
 older mothers had shorter lifespan, which is consistent with most of the
 literature. 4. We found support for the hypothesis that detrimental
 maternal age effects evolve to be weaker under selection for long
 lifespan. However, this finding was only apparent in males, suggesting
 that maternal age affects male and female offspring differently. 5. These
 results suggest that sex-dependent parental age effects should be
 incorporated in the studies of longevity and ageing evolution and that
 selection on one sex can cause evolution of parental age effects in the
 other sex.
description: EmergenceData on emergence success collected from the lab. Emergence success is coded 0=Fail, 1=Success. The content of the file is well described in the methodology section of the associated paper.Lifespan and DevelopmentData on Lifespan and Development time, both are measured in days. Sex is coded F=Female and M=Male.LifespanDevelopment.xlsx
DOI: 10.5061/dryad.80cv0
title: Data from: Quantifying team cooperation through intrinsic multi-scale measures: respiratory and cardiac synchronisation in choir singers and surgical teams

description: A highly localised data-association measure, termed intrinsic
 synchrosqueezing transform (ISC), is proposed for the analysis of coupled
 nonlinear and nonstationary multivariate signals. This is achieved based
 on a combination of noise-assisted multivariate empirical mode
 decomposition (NA-MEMD) and short-time Fourier transform (STFT)-based
 univariate and multivariate synchrosqueezing transforms (FSST and F-MSST).
 It is shown that the ISC outperforms six other combinations of algorithms
 in estimating degrees of synchrony in synthetic linear and nonlinear
 bivariate signals. Its advantage is further illustrated in the precise
 identification of the synchronised respiratory and HRV frequencies among a
 subset of bass singers of a professional choir, where it distinctly
 exhibits better performance than the continuous wavelet transform
 (CWT)-based ISC. We also introduce an extension to intrinsic phase
 synchrony (IPS) measure, referred to as nested intrinsic phase synchrony
 (N-IPS), for the empirical quantification of physically meaningful and
 straightforward to interpret trends in phase synchrony. The N-IPS is
 employed to reveal physically meaningful variations in the levels of
 cooperation in choir singing and performing a surgical procedure. Both the
 proposed techniques successfully reveal degrees of synchronisation of the
 physiological signals in two different aspects: (i) precise localisation
 of synchrony in time and frequency (ISC), and (ii) large scale analysis
 for the empirical quantification of physically meaningful trends in
 synchrony (N-IPS).
description: Data_QuantifyingTeamCooperation_RSOS
DOI: 10.5061/dryad.90p17
title: Data from: Economic evaluation of a general hospital unit for older people with delirium and dementia (TEAM randomised controlled trial)

description: Background: One in three hospital acute medical admissions is of an older
 person with cognitive impairment. Their outcomes are poor and the quality
 of their care in hospital has been criticised. A specialist unit to care
 for older people with delirium and dementia (the Medical and Mental Health
 Unit, MMHU) was developed and then tested in a randomised controlled trial
 where it delivered significantly higher quality of, and satisfaction with,
 care, but no significant benefits in terms of health status outcomes at
 three months. Objective: To examine the cost-effectiveness of the MMHU for
 older people with delirium and dementia in general hospitals, compared
 with standard care. Methods: Six hundred participants aged over 65
 admitted for acute medical care, identified on admission as cognitively
 impaired, were randomised to the MMHU or to standard care on acute
 geriatric or general medical wards. Cost per quality adjusted life year
 (QALY) gained, at 3-month follow-up, was assessed in trial-based economic
 evaluation (599/600 participants, intervention: 309). Multiple imputation
 and complete-case sample analyses were employed to deal with missing QALY
 data (55%). Results: The total adjusted health and social care costs,
 including direct costs of the intervention, at 3 months was £7714 and
 £7862 for MMHU and standard care groups, respectively (difference -£149
 (95% confidence interval [CI]: -298, 4)). The difference in QALYs gained
 was 0.001 (95% CI: -0.006, 0.008). The probability that the intervention
 was dominant was 58%, and the probability that it was cost-saving with
 QALY loss was 39%. At £20,000/QALY threshold, the probability of
 cost-effectiveness was 94%, falling to 59% when cost-saving QALY loss
 cases were excluded. Conclusions: The MMHU was strongly cost-effective
 using usual criteria, although considerably less so when the less
 acceptable situation with QALY loss and cost savings were excluded.
 Nevertheless, this model of care is worthy of further evaluation.
description: TEAM economic evaluation
 datasetClinical and resource
 use/cost data for economic evaluation. Clinical data variable names in
 separate document.