cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5877802
title: High-temperature–low-pressure metamorphism and the production of S-type granites of the Hillgrove Supersuite, southern New England Orogen, NSW, Australia

description: The high-temperature–low-pressure Wongwibinda Metamorphic Complex of the southern New England Orogen is bound by S-type granite plutons of the Hillgrove Supersuite to the north, east and south. New U–Pb geochronology of five samples of the Hillgrove Supersuite demonstrates that plutonism in the complex involved two pulses: <i>ca</i> 300 Ma and <i>ca</i> 292 Ma. This indicates that plutonism partially overlaps the age of high-<i>T</i>–low-<i>P</i> metamorphism (296.8 ± 1.5 Ma), but also postdates it. Zircon grains identified as xenocrysts based on age (≥310 Ma) have U–Pb–Hf isotopic character that largely overlaps detrital grains in the host Girrakool Beds, indicating that accretionary complex crust is the likely source of these xenocrysts. The <sup>176</sup>Hf/<sup>177</sup>Hf initial character for zircon for the <i>ca</i> 300 Ma plutons (three samples) is less radiogenic than those in the <i>ca</i> 292 Ma plutons (two samples). The progression in <sup>176</sup>Hf/<sup>177</sup>Hf initial character for zircon infers an increasing mantle component in the Hillgrove Supersuite with time. These data are evidence of a rift tectonic setting, where mantle-derived magmas are predicted to more readily migrate to shallower crustal levels as the crust thins and becomes hotter. Additionally, early episodes of partial melting in the system melt-depleted the metasedimentary sources, thus reducing the S-type component as anatexis progressed. The evolution of the Hillgrove Supersuite coincides with a period of early Permian slab roll back and extension accompanied by crustal rifting and thinning, leading to high-<i>T</i>–low-<i>P</i> metamorphism, anatexis and S-type granite production and the development of rift basins such as the Sydney–Gunnedah–Bowen system.
DOI: 10.6084/m9.figshare.5877793
title: U–Pb geochronology and palynology from Lopingian (upper Permian) coal measure strata of the Galilee Basin, Queensland, Australia

description: This study presents the first chemical abrasion-isotope dilution thermal ionisation mass spectrometry (CA-IDTIMS) U–Pb zircon ages from tuffs in Lopingian (upper Permian) strata of the Galilee Basin, Queensland and reassigns the B coal-seam to the ‘Burngrove Formation equivalent.’ Five Lopingian tuffs were dated: four from the CRD Montani-1 drill hole including three from the ‘Fair Hill Formation equivalent’ (255.13 ± 0.09, 254.41 ± 0.07 and 254.32 ± 0.10 Ma) and one from the ‘Burngrove Formation equivalent’ (252.81 ± 0.07 Ma, approximately the age of the Yarrabee Tuff in the adjacent Bowen Basin); and a single tuff from the Black Alley Shale in the GSQ Tambo-1-1A drill hole (254.09 ± 0.06 Ma). In the Galilee Basin, all three units are constituents of the Betts Creek Group, here formally elevated in nomenclatural status from the Betts Creek beds. On the western margin of the basin, the group thins, and the ‘J and K’ seams (formerly known as the Crossmore and Glenaras sequences, respectively) in the GSQ Muttaburra-1 drill hole have been interpreted through palynology as Cisuralian–early Guadalupian (spore-pollen assemblage APP3.2). This corroborates the exclusion of the ‘J and K’ seams from the overlying Lopingian Betts Creek Group (spore-pollen assemblage APP5), and the underlying lower to mid-Cisuralian Aramac Coal Measures (spore-pollen assemblage APP2.2), which represent the uppermost unit of the Joe Joe Group. It is proposed that the ‘J and K’ seams are restricted to a depocentre in the Hulton–Rand structure. The recognition of these strata containing APP3.2 spore-pollen assemblages suggests that the mid-Permian hiatus is locally reduced to 12–13 My from 30 Ma (where the ‘J and K’ seams are absent). The results of the radiometric dating and palynological analysis in the Galilee Basin support the proposed, albeit informal stratigraphy, that is given in terms of equivalents of formational units in the Bowen Basin and on the intervening Springsure Shelf.
DOI: 10.6084/m9.figshare.5877793.v1
title: U–Pb geochronology and palynology from Lopingian (upper Permian) coal measure strata of the Galilee Basin, Queensland, Australia

description: This study presents the first chemical abrasion-isotope dilution thermal ionisation mass spectrometry (CA-IDTIMS) U–Pb zircon ages from tuffs in Lopingian (upper Permian) strata of the Galilee Basin, Queensland and reassigns the B coal-seam to the ‘Burngrove Formation equivalent.’ Five Lopingian tuffs were dated: four from the CRD Montani-1 drill hole including three from the ‘Fair Hill Formation equivalent’ (255.13 ± 0.09, 254.41 ± 0.07 and 254.32 ± 0.10 Ma) and one from the ‘Burngrove Formation equivalent’ (252.81 ± 0.07 Ma, approximately the age of the Yarrabee Tuff in the adjacent Bowen Basin); and a single tuff from the Black Alley Shale in the GSQ Tambo-1-1A drill hole (254.09 ± 0.06 Ma). In the Galilee Basin, all three units are constituents of the Betts Creek Group, here formally elevated in nomenclatural status from the Betts Creek beds. On the western margin of the basin, the group thins, and the ‘J and K’ seams (formerly known as the Crossmore and Glenaras sequences, respectively) in the GSQ Muttaburra-1 drill hole have been interpreted through palynology as Cisuralian–early Guadalupian (spore-pollen assemblage APP3.2). This corroborates the exclusion of the ‘J and K’ seams from the overlying Lopingian Betts Creek Group (spore-pollen assemblage APP5), and the underlying lower to mid-Cisuralian Aramac Coal Measures (spore-pollen assemblage APP2.2), which represent the uppermost unit of the Joe Joe Group. It is proposed that the ‘J and K’ seams are restricted to a depocentre in the Hulton–Rand structure. The recognition of these strata containing APP3.2 spore-pollen assemblages suggests that the mid-Permian hiatus is locally reduced to 12–13 My from 30 Ma (where the ‘J and K’ seams are absent). The results of the radiometric dating and palynological analysis in the Galilee Basin support the proposed, albeit informal stratigraphy, that is given in terms of equivalents of formational units in the Bowen Basin and on the intervening Springsure Shelf.
DOI: 10.6084/m9.figshare.5877727
title: Raw PRR intensity vs temperature

description: Raw photoinduced resonant reflection imagages of sample at different temperatures. Temperature were measured for every image and stored in separate file. Calibration curve can be found within the code. 1 pix = 1.75 um
DOI: 10.6084/m9.figshare.5877727.v1
title: Raw PRR intensity vs temperature

description: Raw photoinduced resonant reflection imagages of sample at different temperatures. Temperature were measured for every image and stored in separate file. Calibration curve can be found within the code. 1 pix = 1.75 um
DOI: 10.6084/m9.figshare.5877486
title: Neisseria core genome alignment and phylogeny

description: All publicly available genomes from the <i>Neisseria </i>genus were downloaded from NCBI (as of December 30, 2017) and annotated with Prokka v 1.12. <i>N. gonorrhoeae </i>and <i>N. meningitidis </i>were subsampled to 20 genomes. Core genes (n = 236) were identified and aligned with Roary v 3.12.0. Approximate maximum likelihood phylogenetic analysis was performed used FastTree v 2.1.9. The phylogeny was visualized using FigTree (http://tree.bio.ed.ac.uk/software/figtree/). Branches are scaled by substitutions per site.
DOI: 10.6084/m9.figshare.5877486.v1
title: Neisseria core genome alignment and phylogeny

description: All publicly available genomes from the <i>Neisseria </i>genus were downloaded from NCBI (as of December 30, 2017) and annotated with Prokka v 1.12. <i>N. gonorrhoeae </i>and <i>N. meningitidis </i>were subsampled to 20 genomes. Core genes (n = 236) were identified and aligned with Roary v 3.12.0. Approximate maximum likelihood phylogenetic analysis was performed used FastTree v 2.1.9. The phylogeny was visualized using FigTree (http://tree.bio.ed.ac.uk/software/figtree/). Branches are scaled by substitutions per site.
DOI: 10.6084/m9.figshare.5877468
title: STRdata_PLOSONE.txt

description: Thirteen microsatellite markers data from 153 Colombian paso horses (four groups: Colombian paso fino-CPF, Colombian trocha-CTR, Colombian trocha and gallop-CTRG, Colombian trot and gallop-CTG). Data provided by Fedequinas.
DOI: 10.6084/m9.figshare.5877468.v1
title: STRdata_PLOSONE.txt

description: Thirteen microsatellite markers data from 153 Colombian paso horses (four groups: Colombian paso fino-CPF, Colombian trocha-CTR, Colombian trocha and gallop-CTRG, Colombian trot and gallop-CTG). Data provided by Fedequinas.
DOI: 10.6084/m9.figshare.5877405
title: Kinematic_DMRT3data_PLOSONE.txt

description: It includes kinematic and DMRT3 genotypes of the Colombian Paso Horse (Colombian Criollo Paso Horse) breed.
DOI: 10.6084/m9.figshare.5877405.v1
title: Kinematic_DMRT3data_PLOSONE.txt

description: It includes kinematic and DMRT3 genotypes of the Colombian Paso Horse (Colombian Criollo Paso Horse) breed.
DOI: 10.6084/m9.figshare.5877396
title: Data from A linked land-sea modeling framework to inform ridge-to-reef management in high oceanic islands

description: This data is a portion of a larger project that developed a novel linked land-sea modeling framework based on local data, which coupled groundwater and coral reef models at fine spatial resolution, to determine the effects of terrestrial drivers (groundwater and nutrients), mediated by human activities (land cover/use), and marine drivers (waves, geography, and habitat) on coral reefs. Declining natural resources have led to a cultural renaissance across the Pacific that seeks to revive customary ridge-to-reef management approaches to protect freshwater and restore abundant coral reef fisheries. As a results, there is am omcreased need for improved understanding of land-sea linkages and decision-support tools to simultaneously evaluate the effects of terrestrial and marine drivers on coral reefs, mediated by anthropogenic activities. We applied this framework in two ‘ridge-to-reef’ systems (Hā‘ena and Ka‘ūpūlehu) subject to different natural disturbance regimes, located in the Hawaiian Archipelago. Spatial prediction grids of coral reef indicators at 60 x 60 m, deried from the linked land-sea modeling framework. These predictons represent a snapshot in time of the coral reef community under present conditions. Present distribution allows to identify coral reef areas vulnerable to future coastal development or climate change project impacts.
DOI: 10.6084/m9.figshare.5877396.v2
title: Data from A linked land-sea modeling framework to inform ridge-to-reef management in high oceanic islands

description: This data is a portion of a larger project that developed a novel linked land-sea modeling framework based on local data, which coupled groundwater and coral reef models at fine spatial resolution, to determine the effects of terrestrial drivers (groundwater and nutrients), mediated by human activities (land cover/use), and marine drivers (waves, geography, and habitat) on coral reefs. Declining natural resources have led to a cultural renaissance across the Pacific that seeks to revive customary ridge-to-reef management approaches to protect freshwater and restore abundant coral reef fisheries. As a results, there is am omcreased need for improved understanding of land-sea linkages and decision-support tools to simultaneously evaluate the effects of terrestrial and marine drivers on coral reefs, mediated by anthropogenic activities. We applied this framework in two ‘ridge-to-reef’ systems (Hā‘ena and Ka‘ūpūlehu) subject to different natural disturbance regimes, located in the Hawaiian Archipelago. Spatial prediction grids of coral reef indicators at 60 x 60 m, deried from the linked land-sea modeling framework. These predictons represent a snapshot in time of the coral reef community under present conditions. Present distribution allows to identify coral reef areas vulnerable to future coastal development or climate change project impacts.
DOI: 10.6084/m9.figshare.5877396.v1
title: Data from a linked land-sea modeling framework to inform ridge-to-reef management in high oceanic islands

description: This data is a portion of a larger project that developed a novel linked land-sea modeling framework based on local data, which coupled groundwater and coral reef models at fine spatial resolution, to determine the effects of terrestrial drivers (groundwater and nutrients), mediated by human activities (land cover/use), and marine drivers (waves, geography, and habitat) on coral reefs. Declining natural resources have led to a cultural renaissance across the Pacific that seeks to revive customary ridge-to-reef management approaches to protect freshwater and restore abundant coral reef fisheries. As a results, there is am omcreased need for improved understanding of land-sea linkages and decision-support tools to simultaneously evaluate the effects of terrestrial and marine drivers on coral reefs, mediated by anthropogenic activities. We applied this framework in two ‘ridge-to-reef’ systems (Hā‘ena and Ka‘ūpūlehu) subject to different natural disturbance regimes, located in the Hawaiian Archipelago. Spatial prediction grids of coral reef indicators at 60 x 60 m, deried from the linked land-sea modeling framework. These predictons represent a snapshot in time of the coral reef community under present conditions. Present distribution allows to identify coral reef areas vulnerable to future coastal development or climate change project impacts.
DOI: 10.6084/m9.figshare.5877357.v4
title: A Note on the Impact the International Trade on the Growth Develpment Economics

description: This paper investigates the impact of international trade on the economic growth of a group of developing countries. For this, the structural model proposed by Anderson et al. (2014) is used. The results indicate that growth is stimulated by bilateral trade. Counterfactual exercises suggest that trade liberalization, whether it results from reduced NAFTA costs or a hyperglobalization process, has a significant and positive impact on social welfare for some of the countries analyzed. In the case of Brazil, the improvement in welfare is 0.25% and 9.13%, respectively. Overall, the results demonstrate that international trade can be used as a tool to leverage GDP growth and the welfare of countries. <br>
DOI: 10.6084/m9.figshare.5877357.v5
title: A Note on the Impact the International Trade on the Growth Develpment Economics

description: This paper investigates the impact of international trade on the economic growth of a group of developing countries. For this, the structural model proposed by Anderson et al. (2014) is used. The results indicate that growth is stimulated by bilateral trade. Counterfactual exercises suggest that trade liberalization, whether it results from reduced NAFTA costs or a hyperglobalization process, has a significant and positive impact on social welfare for some of the countries analyzed. In the case of Brazil, the improvement in welfare is 0.25% and 9.13%, respectively. Overall, the results demonstrate that international trade can be used as a tool to leverage GDP growth and the welfare of countries. <br>
DOI: 10.6084/m9.figshare.5877324
title: Phylogenetic supertree and functional trait database for all extant parrots

description: We present a complete dataset from the literature on functional traits including morphological measurements, dietary information, foraging strategy, and foraging location for all 398 extant species of parrots. The morphological measurements include: mass as well as total length, wing chord, culmen, tarsus, and tail length. The diet data describe whether each species is known to consume particular food items (e.g. nectar, berries, and carrion), foraging strategy data describes how each species captures or accesses food, and foraging location describes the habitat from which each species finds food (e.g. ground, canopy, and subcanopy). We also present a time-calibrated phylogenetic supertree that contains all 398 extant species as well as 15 extinct species (413 total species). <br><br>Please cite: Kevin R. Burgio, Katie E. Davis, Lindsay M. Dreiss, Laura M. Cisneros, Brian T. Klingbeil, Steven J. Presley, Michael R. Willig, Phylogenetic supertree and functional trait database for all extant parrots, Data in Brief, 2019, 103882, ISSN 2352-3409, https://doi.org/10.1016/j.dib.2019.103882. <br><br>
DOI: 10.6084/m9.figshare.5877324.v1
title: Phylogenetic supertree and functional trait database for all extant parrots

description: We present a complete dataset from the literature on functional traits including morphological measurements, dietary information, foraging strategy, and foraging location for all 398 extant species of parrots. The morphological measurements include: mass as well as total length, wing chord, culmen, tarsus, and tail length. The diet data describe whether each species is known to consume particular food items (e.g. nectar, berries, and carrion), foraging strategy data describes how each species captures or accesses food, and foraging location describes the habitat from which each species finds food (e.g. ground, canopy, and subcanopy). We also present a time-calibrated phylogenetic supertree that contains all 398 extant species as well as 15 extinct species (413 total species). <br><br>Please cite: Kevin R. Burgio, Katie E. Davis, Lindsay M. Dreiss, Laura M. Cisneros, Brian T. Klingbeil, Steven J. Presley, Michael R. Willig, Phylogenetic supertree and functional trait database for all extant parrots, Data in Brief, 2019, 103882, ISSN 2352-3409, https://doi.org/10.1016/j.dib.2019.103882. <br><br>
DOI: 10.6084/m9.figshare.5877270
title: All data for humus soil.opj

description: Humus soil was selected as the original sample (HOS). The adsorption fractions were obtained by removal of dissolved organic matter (HRDOM), removal of minerals (HRM), removal of free fat (HRLF) and nonhydrolyzable organic carbon (HNHC) respectively to investigate the adsorption characteristic of oxytetracycline on the different fractions of humus organic matter.
DOI: 10.6084/m9.figshare.5877270.v1
title: All data for humus soil.opj

description: Humus soil was selected as the original sample (HOS). The adsorption fractions were obtained by removal of dissolved organic matter (HRDOM), removal of minerals (HRM), removal of free fat (HRLF) and nonhydrolyzable organic carbon (HNHC) respectively to investigate the adsorption characteristic of oxytetracycline on the different fractions of humus organic matter.
DOI: 10.6084/m9.figshare.5877033
title: Data File 4: qPCR data for Polysome Gradients

description: These are the numerical data that were generated by polysome gradient fractionation and analysis of translational changes in response to Fhit loss. Briefly, most cancer-linked mRNAs see translation decreases when Fhit is lost. They are the numerical values exported from a Biorad CFX Connect qPCR machine. The data are normalized to an added spike control RNA (Luciferase) and relative values (vs total gradient input) are calculated for both E1 and D1 cell lines.
DOI: 10.6084/m9.figshare.5877027
title: Data File 7: qPCR data for DRB experiments

description: RNA was harvested from cytoplasmic extracts prepared from E1 (Fhit silenced) and D1 induced (Fhit-expressing) cells that had been treated with DRB (5,6-dichloro-1-β-D-ribofuranosylbenzimidazole) for between 0 and 10 hours to block transcription. The decay of individual mRNA species was monitored using RT-qPCR. The RNA samples are remainders from the experiments published in [1]. These data are the numerical values exported from a Biorad CFX Connect qPCR machine. The data are normalized to internal spikes and relative values (vs T0) are calculated for both E1 and D1 cell lines.
DOI: 10.6084/m9.figshare.5876721
title: Socio-demographic Factors Associated with Risk Behaviour of Hepatitis B Virus Infection among Adults in the Community of Selangor, Malaysia

description: This data is a part of publication manuscript submitted to PloS ONE.
DOI: 10.6084/m9.figshare.5876721.v1
title: Socio-demographic Factors Associated with Risk Behaviour of Hepatitis B Virus Infection among Adults in the Community of Selangor, Malaysia

description: This data is a part of publication manuscript submitted to PloS ONE.
DOI: 10.6084/m9.figshare.5876673
title: Extended supplementary tables

description: The complete set of supplmentary tables linked to the original publication.<br><br>
DOI: 10.6084/m9.figshare.5876673.v2
title: Extended supplementary tables

description: The complete set of supplmentary tables linked to the original publication.<br><br>
DOI: 10.6084/m9.figshare.5876673.v1
title: Complete supplementary tables

description: The complete set of supplmentary tables linked to the original publication.<br><br>
DOI: 10.6084/m9.figshare.5876610
title: Additional file 6: of Features of the organization of bread wheat chromosome 5BS based on physical mapping

description: Design of primers for zipper (zc) markers. (XLS 40 kb)
DOI: 10.6084/m9.figshare.5876610.v1
title: Additional file 6: of Features of the organization of bread wheat chromosome 5BS based on physical mapping

description: Design of primers for zipper (zc) markers. (XLS 40 kb)
DOI: 10.6084/m9.figshare.5876601
title: Additional file 5: of Features of the organization of bread wheat chromosome 5BS based on physical mapping

description: Mapping of IonTorrent contigs on Brachypodium region (Bd4: 0.9–3.2 Mb). (XLSX 16 kb)
DOI: 10.6084/m9.figshare.5876601.v1
title: Additional file 5: of Features of the organization of bread wheat chromosome 5BS based on physical mapping

description: Mapping of IonTorrent contigs on Brachypodium region (Bd4: 0.9–3.2 Mb). (XLSX 16 kb)
DOI: 10.6084/m9.figshare.5876598
title: Additional file 5: Table S5. of Consequences of early life stress on genomic landscape of H3K4me3 in prefrontal cortex of adult mice

description: Reactome pathways significantly up- and dowregulated by stress. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.5876598.v1
title: Additional file 5: Table S5. of Consequences of early life stress on genomic landscape of H3K4me3 in prefrontal cortex of adult mice

description: Reactome pathways significantly up- and dowregulated by stress. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.5876592
title: Additional file 4: of Features of the organization of bread wheat chromosome 5BS based on physical mapping

description: Consensus 5B map. (X1CSF2 – F2 population from cross Chinese Spring x Chinese Spring-5Bdic; X2CSRICL - RICL from cross Chinese Spring x Chinese Spring-5Bdic). (XLSX 21 kb)
DOI: 10.6084/m9.figshare.5876592.v1
title: Additional file 4: of Features of the organization of bread wheat chromosome 5BS based on physical mapping

description: Consensus 5B map. (X1CSF2 – F2 population from cross Chinese Spring x Chinese Spring-5Bdic; X2CSRICL - RICL from cross Chinese Spring x Chinese Spring-5Bdic). (XLSX 21 kb)
DOI: 10.6084/m9.figshare.5876586
title: Additional file 4: Table S4. of Consequences of early life stress on genomic landscape of H3K4me3 in prefrontal cortex of adult mice

description: H3K4me3 peaks differentially enriched in PFC of MS mice. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5876586.v1
title: Additional file 4: Table S4. of Consequences of early life stress on genomic landscape of H3K4me3 in prefrontal cortex of adult mice

description: H3K4me3 peaks differentially enriched in PFC of MS mice. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5876580
title: Additional file 3: Table S3. of HK3 overexpression associated with epithelial-mesenchymal transition in colorectal cancer

description: (XLS 34 kb)
DOI: 10.6084/m9.figshare.5876580.v1
title: Additional file 3: Table S3. of HK3 overexpression associated with epithelial-mesenchymal transition in colorectal cancer

description: (XLS 34 kb)