cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18266498
title: Bulk RNA-seq gene count matrices from human T cells and mouse PBMCs under metabolic perturbations

description: This record contains processed gene-level count matrices generated from bulk RNA-seq experiments.

The dataset includes:



in vitro bulk RNA-seq of CD3⁺ T cells isolated from human peripheral blood and treated with defined metabolites under controlled experimental conditions;

in vivo bulk RNA-seq of peripheral blood mononuclear cells (PBMCs) isolated from mice exposed to dextran sulfate sodium (DSS) and administered metabolites.
DOI: 10.5281/zenodo.18266499
title: Bulk RNA-seq gene count matrices from human T cells and mouse PBMCs under metabolic perturbations

description: This record contains processed gene-level count matrices generated from bulk RNA-seq experiments.

The dataset includes:



in vitro bulk RNA-seq of CD3⁺ T cells isolated from human peripheral blood and treated with defined metabolites under controlled experimental conditions;

in vivo bulk RNA-seq of peripheral blood mononuclear cells (PBMCs) isolated from mice exposed to dextran sulfate sodium (DSS) and administered metabolites.
DOI: 10.15468/dl.ky8e2p
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013749-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5mks6f
title: Occurrence Download

description: A dataset containing 294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 294 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013750-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x3n6un
title: Occurrence Download

description: A dataset containing 530 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eudyptes moseleyi",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 530 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013753-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kk3e7h
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013752-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bb46yd
title: Occurrence Download

description: A dataset containing 38759 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Celastrus orbiculatus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1981",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))"
 ]
}

 The dataset includes 38759 records from 234 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013748-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dg9jgj
title: Occurrence Download

description: A dataset containing 92006 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Asia, Oceania, North America, South America)",
 "TaxonKey is Hydrangea"
 ]
}

 The dataset includes 92006 records from 602 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013690-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jqwkf
title: Occurrence Download

description: A dataset containing 17138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agonum muelleri (Herbst, 1784)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17138 records from 292 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008559-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksvk4g
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Amara scitula Zimmermann, 1832",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 165 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008562-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.et85jm
title: Occurrence Download

description: A dataset containing 4080 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agrilus planipennis Fairmaire, 1888",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4080 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008560-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hv58t9
title: Occurrence Download

description: A dataset containing 1864315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Repatriated is TRUE",
 "Country is Norway",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is null",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
 },
 {
 "not" : {
 "DatasetKey" : [
 "is EBCC Atlas of European Breeding Birds"
 ]
 }
 },
 {
 "not" : {
 "DatasetKey" : [
 "is (Table 3) Relative abundance of Azolla spp., peridinoid dinocysts, gonyaulacoid dinocysts, non-saccate pollen, bisaccate pollen and spores from the Lomonosov Ridge during different Arctic coring expeditions"
 ]
 }
 }
 ]
}

 The dataset includes 1864315 records from 1600 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008533-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwjqzc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sonchus asper",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023939-250811113504898/datasets/export for details.
DOI: 10.3535/h8p-bv3-h8a
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k7c-0kw-way
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/td6-jq8-2xa
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/951-tk1-gj1
title: Sigmoilina grata (Terquem, 1878)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bh3-sxc-6fn
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tc1-pwl-mq4
title: Bolivina subcompressa (d'Orbigny, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.26pyt6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sonchus asper",
 "Country is Vanuatu",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023941-250811113504898/datasets/export for details.
DOI: 10.3535/6p3-7n1-fnl
title: Neoconorbina terquemi (Rzehak, 1888)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fm8-sga-515
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0h0-m8e-8pc
title: Discanomalina Asano, 1951

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aqm-dsk-va7
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ksj-ves-hkt
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/31w-t9d-3x0
title: Pseudothurmannia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mye-ze6-a88
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v0n-9qm-7zw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s8c-nn5-q3l
title: Crioceratites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xq4-jp1-lrj
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fgq-lxk-64k
title: Cribrostomoides subglobosus (Cushman, 1910)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x96-g4g-7ch
title: Teschenites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wfj-vfc-k56
title: Orbulina universa d'Orbigny, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ykz-q2w-3qr
title: Globigerinoides conglobatus (Brady, 1879)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.vhjvjb
title: Occurrence Download

description: A dataset containing 3672 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sarracenia leucophylla"
 ]
}

 The dataset includes 3672 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023942-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/kr3-9nt-j00
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/04f-bjd-hks
title: Osangularia culter (Parker & Jones, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9pw-0kw-sd4
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/as2-32h-hhr
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/smm-x5q-zzp
title: Pullenia bulloides (d'Orbigny, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1ga-9lj-jta
title: Globigerinoides ruber (d'Orbigny, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zve-tpa-py2
title: Neoeponides antillarum (d'Orbigny, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lyp-f29-aws
title: Crioceratites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rbq-8r2-9gy
title: Bochianites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.e7xhbb
title: Occurrence Download

description: A dataset containing 13218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sonchus asper",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13218 records from 179 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023940-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/5lw-dla-3rv
title: Fissurina alveolata (Brady, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tpj-tdn-byx
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.8mprht
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dolichopteroides binocularis (Beebe, 1932)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((8.2112 -0.773,8.9648 -2.2147,8.9648 1.4824,8.8631 1.3007,8.8278 -0.0747,8.2974 -0.3332,8.2112 -0.773))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008682-250525065834625/datasets/export for details.
DOI: 10.15468/dl.v2vk9z
title: Occurrence Download

description: A dataset containing 185436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Afghanistan, Bahrain, China, Egypt, Georgia, Greece, Iran (Islamic Republic of), Iraq, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Mongolia, Oman, Qatar, Russian Federation, Saudi Arabia, Tajikistan, Turkmenistan, United Arab Emirates, Uzbekistan, Türkiye, Yemen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN, VU, NT, LC, DD, NE)",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 185436 records from 247 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012262-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hhuxrp
title: Occurrence Download

description: A dataset containing 64924 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((33.18264 -7.427288, 36.06141 -7.427288, 36.06141 -4.182004, 33.18264 -4.182004, 33.18264 -7.427288))"
 ]
}

 The dataset includes 64924 records from 251 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011656-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28861280
title: Data for Field Surveys and Experiments-Sack&Selland.xlsm

description: Schistosomiasis is a devastating parasitic disease in which the infectious stage to humans is released by intermediate host snails. The Senegal River Basin (SRB) is a high-risk area for both urogenital and fecal human schistosomiasis and has extensive rice cultivation. However, occupational risk of schistosomiasis to people working in irrigated rice fields is not well established. We performed intermediate host snail surveys from 2022-2023 in rice fields and irrigation canals throughout the SRB. We discovered human schistosome-shedding snails in rice fields and adjacent irrigation canals during the rice growing and non-growing seasons, establishing a clear occupational exposure risk to rice farmers. Relative to the non-growing season, this risk was higher in the rice growing and harvest season when more people are in the rice fields. Rice-fish co-culturing might reduce this occupational risk to rice farmers if local fish species consume enough snail intermediate hosts to reduce <i>Schistosoma </i>transmission. Our predation trials revealed that local <i>Heterotis niloticus</i> and <i>Hemichromis</i> spp. fish consumed significant numbers of <i>Biomphalaria pfeifferi </i>and <i>Bulinus spp. </i>snails, and separate trials revealed that these same snail species exhibited only moderate avoidance and refuge use responses to fish chemical cues. These results indicate that there is exposure to <i>Schistosoma</i> parasites in rice fields in the SRB and introducing local fish to rice fields has promise for reducing this exposure as well as providing a protein source to rice farming families. We encourage future studies to more fully explore the benefits of rice-fish co-culturing in the West Africa.
DOI: 10.6084/m9.figshare.28861280.v1
title: Data for Field Surveys and Experiments-Sack&Selland.xlsm

description: Schistosomiasis is a devastating parasitic disease in which the infectious stage to humans is released by intermediate host snails. The Senegal River Basin (SRB) is a high-risk area for both urogenital and fecal human schistosomiasis and has extensive rice cultivation. However, occupational risk of schistosomiasis to people working in irrigated rice fields is not well established. We performed intermediate host snail surveys from 2022-2023 in rice fields and irrigation canals throughout the SRB. We discovered human schistosome-shedding snails in rice fields and adjacent irrigation canals during the rice growing and non-growing seasons, establishing a clear occupational exposure risk to rice farmers. Relative to the non-growing season, this risk was higher in the rice growing and harvest season when more people are in the rice fields. Rice-fish co-culturing might reduce this occupational risk to rice farmers if local fish species consume enough snail intermediate hosts to reduce <i>Schistosoma </i>transmission. Our predation trials revealed that local <i>Heterotis niloticus</i> and <i>Hemichromis</i> spp. fish consumed significant numbers of <i>Biomphalaria pfeifferi </i>and <i>Bulinus spp. </i>snails, and separate trials revealed that these same snail species exhibited only moderate avoidance and refuge use responses to fish chemical cues. These results indicate that there is exposure to <i>Schistosoma</i> parasites in rice fields in the SRB and introducing local fish to rice fields has promise for reducing this exposure as well as providing a protein source to rice farming families. We encourage future studies to more fully explore the benefits of rice-fish co-culturing in the West Africa.
DOI: 10.15468/dl.pmnyc3
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Omphalotus mexicanus"
 ]
}

 The dataset includes 105 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040815-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y56jxy
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-108.1188 21.59913, -107.9688 21.59913, -107.9688 21.74913, -108.1188 21.74913, -108.1188 21.59913))"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040816-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29575361
title: Chromosome-level genome assembly of the white-spotted sawyer <i>Monochamus scutellatus</i> (Coleoptera: Cerambycidae)

description: The white-spotted sawyer, <i>Monochamus scutellatus </i>(Say) (Coleoptera: Cerambycidae), is an important vector of pinewood nematode (PWN), <i>Bursaphelenchus xylophilus </i>(Steiner and Buhrer) Nickle, in North America. While <i>Monochamus</i> species from the Palearctic region have been extensively studied for their role in transmitting PWN that causes pine wilt disease in Asia and Europe, the genetic mechanisms underlying <i>Monochamus</i>-PWN interactions in their native range remain largely unknown. Here, we present the first chromosome-level genome assembly of the North American <i>M. scutellatus</i>, constructed using PacBio HiFi long read, Pore-C chromatin conformation capture, and Illumina RNA sequencing. The assembled genome spans 830.9 Mbp, with a scaffold N50 of 87.9 Mbp, 97.9% of which were anchored to 10 chromosome-level scaffolds. The X chromosome was identified through synteny analysis. Repeat elements constitute 70.7% of the genome, and 13,684 protein-coding genes were functionally annotated. This reference-quality genome of <i>M. scutellatus</i> provides a valuable comparative resource for elucidating the genomic basis of <i>Monochamus</i>-PWN interactions, and offers a foundation for devising targeted management strategies against PWN and its vectors.
DOI: 10.6084/m9.figshare.29575361.v2
title: Chromosome-level genome assembly of the white-spotted sawyer <i>Monochamus scutellatus</i> (Coleoptera: Cerambycidae)

description: The white-spotted sawyer, <i>Monochamus scutellatus </i>(Say) (Coleoptera: Cerambycidae), is an important vector of pinewood nematode (PWN), <i>Bursaphelenchus xylophilus </i>(Steiner and Buhrer) Nickle, in North America. While <i>Monochamus</i> species from the Palearctic region have been extensively studied for their role in transmitting PWN that causes pine wilt disease in Asia and Europe, the genetic mechanisms underlying <i>Monochamus</i>-PWN interactions in their native range remain largely unknown. Here, we present the first chromosome-level genome assembly of the North American <i>M. scutellatus</i>, constructed using PacBio HiFi long read, Pore-C chromatin conformation capture, and Illumina RNA sequencing. The assembled genome spans 830.9 Mbp, with a scaffold N50 of 87.9 Mbp, 97.9% of which were anchored to 10 chromosome-level scaffolds. The X chromosome was identified through synteny analysis. Repeat elements constitute 70.7% of the genome, and 13,684 protein-coding genes were functionally annotated. This reference-quality genome of <i>M. scutellatus</i> provides a valuable comparative resource for elucidating the genomic basis of <i>Monochamus</i>-PWN interactions, and offers a foundation for devising targeted management strategies against PWN and its vectors.