cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.c9m62t
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is Phasianus colchicus Linnaeus, 1758",
 "Year is 2000",
 "Country is United States of America",
 "StateProvince is Montana",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Machine Observation, Observation, Occurrence evidence)"
 ]
}

 The dataset includes 74 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035405-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3887437_d5
title: Additional file 5: Table S4. of ITRAQ-based quantitative proteomic analysis of Cynops orientalis limb regeneration

description: Differential expression proteins were assigned to 232 KEGG pathway. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3887437_d4
title: Additional file 4: Table S3. of ITRAQ-based quantitative proteomic analysis of Cynops orientalis limb regeneration

description: GO annotations of the differentially expressed proteins. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3887437_d3.v1
title: Additional file 3: Figure S1. of ITRAQ-based quantitative proteomic analysis of Cynops orientalis limb regeneration

description: Hierarchy clustering analysis of the DEPs on the limb regenerated stages of CynopsÂ orientalis. (ZIP 670Â kb)
DOI: 10.6084/m9.figshare.c.3887437_d3
title: Additional file 3: Figure S1. of ITRAQ-based quantitative proteomic analysis of Cynops orientalis limb regeneration

description: Hierarchy clustering analysis of the DEPs on the limb regenerated stages of CynopsÂ orientalis. (ZIP 670Â kb)
DOI: 10.6084/m9.figshare.c.3887437_d2
title: Additional file 2: Table S2. of ITRAQ-based quantitative proteomic analysis of Cynops orientalis limb regeneration

description: The differentially expression proteins (DEPs) identified during Cynops orientalisÂ limb regeneration. (XLSX 194Â kb)
DOI: 10.6084/m9.figshare.c.3887437_d2.v1
title: Additional file 2: Table S2. of ITRAQ-based quantitative proteomic analysis of Cynops orientalis limb regeneration

description: The differentially expression proteins (DEPs) identified during Cynops orientalisÂ limb regeneration. (XLSX 194Â kb)
DOI: 10.6084/m9.figshare.c.3887437_d1
title: Additional file 1: Table S1. of ITRAQ-based quantitative proteomic analysis of Cynops orientalis limb regeneration

description: Details for the identified proteins. (XLS 3255Â kb)
DOI: 10.6084/m9.figshare.c.3886564_d4
title: Additional file 1: of Evolution and expression analysis reveal the potential role of the HD-Zip gene family in regulation of embryo abortion in grapes (Vitis vinifera L.)

description: Table S1. Differential expressed HD-Zip genes in ovules transcriptome data of PN and TS in 2013 and 2014. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3886564_d4.v1
title: Additional file 1: of Evolution and expression analysis reveal the potential role of the HD-Zip gene family in regulation of embryo abortion in grapes (Vitis vinifera L.)

description: Table S1. Differential expressed HD-Zip genes in ovules transcriptome data of PN and TS in 2013 and 2014. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3886567_d1.v1
title: Additional file 1 of Accelerated parallel algorithm for gene network reverse engineering

description: Source code. The source code developed are available in the Bitbucket repository: https://github.com/califano-lab/GPU-ARACNE . (ZIP 25 kb)
DOI: 10.6084/m9.figshare.c.3886567_d1
title: Additional file 1 of Accelerated parallel algorithm for gene network reverse engineering

description: Source code. The source code developed are available in the Bitbucket repository: https://github.com/califano-lab/GPU-ARACNE . (ZIP 25 kb)
DOI: 10.6084/m9.figshare.c.3886498_d7
title: MOESM1 of Genome-wide SNP data unveils the globalization of domesticated pigs

description: Additional file 1: Table S1. Detailed information and parameters of population genetics for pig populations in this study.
DOI: 10.5281/zenodo.14498228
title: AEE y empleabilidad

description: Datos de la revisión sistemática realizada con PRISMA2020.
DOI: 10.5281/zenodo.14498229
title: AEE y empleabilidad

description: Datos de la revisión sistemática realizada con PRISMA2020.
DOI: 10.6084/m9.figshare.c.3886495_d3.v1
title: Additional file 3: of The dengue preface to endemic in mainland China: the historical largest outbreak by Aedes albopictus in Guangzhou, 2014

description: The age distribution of dengue outbreak in Guangzhou, 2014. The brown bar chart shows the age-specific cumulative cases and the dark red line represents the incidence rate of different age groups. (XLS 400Â kb)
DOI: 10.6084/m9.figshare.c.3886495_d3
title: Additional file 3: of The dengue preface to endemic in mainland China: the historical largest outbreak by Aedes albopictus in Guangzhou, 2014

description: The age distribution of dengue outbreak in Guangzhou, 2014. The brown bar chart shows the age-specific cumulative cases and the dark red line represents the incidence rate of different age groups. (XLS 400Â kb)
DOI: 10.6084/m9.figshare.c.3886495_d2
title: Additional file 2: Table S1. of The dengue preface to endemic in mainland China: the historical largest outbreak by Aedes albopictus in Guangzhou, 2014

description: The district distibution of dengue outbreak in Guangzhou, 2014. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3886495_d2.v1
title: Additional file 2: Table S1. of The dengue preface to endemic in mainland China: the historical largest outbreak by Aedes albopictus in Guangzhou, 2014

description: The district distibution of dengue outbreak in Guangzhou, 2014. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3885181_d3.v1
title: Additional file 3: of Implementation of WHO multimodal strategy for improvement of hand hygiene: a quasi-experimental study in a Traditional Chinese Medicine hospital in Xiâ  an, China

description: Questionnaire survey raw data. (SAV 25 kb)
DOI: 10.6084/m9.figshare.c.3885181_d2.v1
title: Additional file 2: of Implementation of WHO multimodal strategy for improvement of hand hygiene: a quasi-experimental study in a Traditional Chinese Medicine hospital in Xiâ  an, China

description: Possible factors. (SAV 2 kb)
DOI: 10.6084/m9.figshare.c.3885181_d3
title: Additional file 3: of Implementation of WHO multimodal strategy for improvement of hand hygiene: a quasi-experimental study in a Traditional Chinese Medicine hospital in Xiâ  an, China

description: Questionnaire survey raw data. (SAV 25 kb)
DOI: 10.6084/m9.figshare.c.3885181_d2
title: Additional file 2: of Implementation of WHO multimodal strategy for improvement of hand hygiene: a quasi-experimental study in a Traditional Chinese Medicine hospital in Xiâ  an, China

description: Possible factors. (SAV 2 kb)
DOI: 10.6084/m9.figshare.c.3885181_d1
title: Additional file 1: of Implementation of WHO multimodal strategy for improvement of hand hygiene: a quasi-experimental study in a Traditional Chinese Medicine hospital in Xiâ  an, China

description: HH raw data. (SAV 12 kb)
DOI: 10.6084/m9.figshare.c.3885181_d1.v1
title: Additional file 1: of Implementation of WHO multimodal strategy for improvement of hand hygiene: a quasi-experimental study in a Traditional Chinese Medicine hospital in Xiâ  an, China

description: HH raw data. (SAV 12 kb)
DOI: 10.6084/m9.figshare.c.3884068_d5
title: Additional file 5: Table S2. of 
                     B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

description: Primers in this study. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3884068_d5.v1
title: Additional file 5: Table S2. of 
                     B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

description: Primers in this study. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3884068_d2.v1
title: Additional file 2: Table S1. of 
                     B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

description: Ka/Ks analysis and divergence time estimated for pear duplicated BBX paralogs. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3884068_d2
title: Additional file 2: Table S1. of 
                     B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

description: Ka/Ks analysis and divergence time estimated for pear duplicated BBX paralogs. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3882880_d3.v1
title: Additional file 3: Table S2. of DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A

description: Differentially methylated regions identified in RRBS. (XLSX 630 kb)
DOI: 10.6084/m9.figshare.c.3882880_d3
title: Additional file 3: Table S2. of DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A

description: Differentially methylated regions identified in RRBS. (XLSX 630 kb)
DOI: 10.6084/m9.figshare.c.3882880_d2
title: Additional file 2: Table S1. of DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A

description: List of primers used in this study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3882880_d2.v1
title: Additional file 2: Table S1. of DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A

description: List of primers used in this study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3882769_d6.v1
title: Additional file 6: of Prevention of C5aR1 signaling delays microglial inflammatory polarization, favors clearance pathways and suppresses cognitive loss

description: Gene ontology enrichment analysis. Clusters were analyzed with Metascape ( http://metascape.org ) to identify the GO terms (biological processes) enriched in each cluster. The GO terms, their descriptions, logP, log(q-value), InTerm_InList (Genes in cluster/All genes from genome in GO term), and the gene and gene symbols are listed. (XLSX 243Â kb)
DOI: 10.6084/m9.figshare.c.3882769_d6
title: Additional file 6: of Prevention of C5aR1 signaling delays microglial inflammatory polarization, favors clearance pathways and suppresses cognitive loss

description: Gene ontology enrichment analysis. Clusters were analyzed with Metascape ( http://metascape.org ) to identify the GO terms (biological processes) enriched in each cluster. The GO terms, their descriptions, logP, log(q-value), InTerm_InList (Genes in cluster/All genes from genome in GO term), and the gene and gene symbols are listed. (XLSX 243Â kb)
DOI: 10.6084/m9.figshare.c.3882772_d3
title: Additional file 3: of Repeat: a framework to assess empirical reproducibility in biomedical research

description: Inter-rater Reliability Analysis Code; Description: programming script in R demonstrating data formatting, cleaning, inter-rater reliability analysis processes, and results. (R 130 kb)
DOI: 10.6084/m9.figshare.c.3882772_d3.v1
title: Additional file 3: of Repeat: a framework to assess empirical reproducibility in biomedical research

description: Inter-rater Reliability Analysis Code; Description: programming script in R demonstrating data formatting, cleaning, inter-rater reliability analysis processes, and results. (R 130 kb)
DOI: 10.6084/m9.figshare.c.3882772_d2
title: Additional file 2: of Repeat: a framework to assess empirical reproducibility in biomedical research

description: Inter-rater Reliability RepeAT Data; Description: data entered into the RepeAT framework by two independent raters and subsequently used for inter-rater reliability testing. (CSV 102 kb)
DOI: 10.6084/m9.figshare.c.3882772_d2.v1
title: Additional file 2: of Repeat: a framework to assess empirical reproducibility in biomedical research

description: Inter-rater Reliability RepeAT Data; Description: data entered into the RepeAT framework by two independent raters and subsequently used for inter-rater reliability testing. (CSV 102 kb)
DOI: 10.6084/m9.figshare.c.3882772_d1.v1
title: Additional file 1: of Repeat: a framework to assess empirical reproducibility in biomedical research

description: Literature Review Search #2, Description: list of literature collected during literature review search #2 used to define essential elements of reproducibility throughout the development of the RepeAT framework. (RTF 117 kb)
DOI: 10.6084/m9.figshare.c.3882772_d1
title: Additional file 1: of Repeat: a framework to assess empirical reproducibility in biomedical research

description: Literature Review Search #2, Description: list of literature collected during literature review search #2 used to define essential elements of reproducibility throughout the development of the RepeAT framework. (RTF 117 kb)
DOI: 10.6084/m9.figshare.c.3881500_d4.v1
title: Additional file 13: of Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.)

description: Table S7. qPCR primers used for validation of the microarray data. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3881500_d3.v1
title: Additional file 12: of Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.)

description: Table S6. Gene ontology enrichment of probesets overlapping between endosperm clusters of AC Domain and RL4452. (XLS 4007Â kb)
DOI: 10.6084/m9.figshare.c.3881500_d4
title: Additional file 13: of Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.)

description: Table S7. qPCR primers used for validation of the microarray data. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3881500_d3
title: Additional file 12: of Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.)

description: Table S6. Gene ontology enrichment of probesets overlapping between endosperm clusters of AC Domain and RL4452. (XLS 4007Â kb)
DOI: 10.6084/m9.figshare.c.3881500_d2.v1
title: Additional file 11: of Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.)

description: Table S5. Gene ontology enrichment of probesets overlapping between embryo clusters of AC Domain and RL4452. (XLS 2627Â kb)
DOI: 10.6084/m9.figshare.c.3881500_d2
title: Additional file 11: of Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.)

description: Table S5. Gene ontology enrichment of probesets overlapping between embryo clusters of AC Domain and RL4452. (XLS 2627Â kb)
DOI: 10.6084/m9.figshare.c.3881500_d1.v1
title: Additional file 10: of Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.)

description: Table S4. Identification and annotation of wheat transcription factor probesets. (XLS 300Â kb)
DOI: 10.6084/m9.figshare.c.3881500_d1
title: Additional file 10: of Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.)

description: Table S4. Identification and annotation of wheat transcription factor probesets. (XLS 300Â kb)
DOI: 10.6084/m9.figshare.c.3880603_d2.v1
title: MOESM2 of SNP rs3202538 in 3′UTR region of ErbB3 regulated by miR-204 and miR-211 promote gastric cancer development in Chinese population

description: Additional file 2. The output files of relapse free survival rate comparison in different groups analyzed by Kaplan–Meier survival curve.
DOI: 10.6084/m9.figshare.c.3880603_d2
title: MOESM2 of SNP rs3202538 in 3′UTR region of ErbB3 regulated by miR-204 and miR-211 promote gastric cancer development in Chinese population

description: Additional file 2. The output files of relapse free survival rate comparison in different groups analyzed by Kaplan–Meier survival curve.
DOI: 10.6084/m9.figshare.c.3880603_d1.v1
title: MOESM1 of SNP rs3202538 in 3â ˛UTR region of ErbB3 regulated by miR-204 and miR-211 promote gastric cancer development in Chinese population

description: Additional file 1. The output files of overal survival rate comparison in different groups analyzed by Kaplanâ  Meier survival curve.
DOI: 10.6084/m9.figshare.c.3880603_d1
title: MOESM1 of SNP rs3202538 in 3â ˛UTR region of ErbB3 regulated by miR-204 and miR-211 promote gastric cancer development in Chinese population

description: Additional file 1. The output files of overal survival rate comparison in different groups analyzed by Kaplanâ  Meier survival curve.
DOI: 10.6084/m9.figshare.c.3879505_d9
title: Additional file 9: Table S8. of Transcriptomic profiling of genes in matured dimorphic seeds of euhalophyte Suaeda salsa

description: Primer pairs for real-time quantitative PCR. (XLS 17Â kb)
DOI: 10.6084/m9.figshare.c.3879505_d8.v1
title: Additional file 8: Table S7. of Transcriptomic profiling of genes in matured dimorphic seeds of euhalophyte Suaeda salsa

description: DEGs in the plant hormone signal transduction pathway. (XLS 23Â kb)
DOI: 10.6084/m9.figshare.c.3879505_d8
title: Additional file 8: Table S7. of Transcriptomic profiling of genes in matured dimorphic seeds of euhalophyte Suaeda salsa

description: DEGs in the plant hormone signal transduction pathway. (XLS 23Â kb)
DOI: 10.6084/m9.figshare.c.3879505_d7
title: Additional file 7: Table S6. of Transcriptomic profiling of genes in matured dimorphic seeds of euhalophyte Suaeda salsa

description: DEGs related to plant hormones according to GO function annotation. (XLS 118Â kb)
DOI: 10.6084/m9.figshare.c.3879505_d6.v1
title: Additional file 6: Table S5. of Transcriptomic profiling of genes in matured dimorphic seeds of euhalophyte Suaeda salsa

description: DEGs related to osmotic regulation substances according to GO function annotation. (XLS 57Â kb)
DOI: 10.6084/m9.figshare.c.3879505_d7.v1
title: Additional file 7: Table S6. of Transcriptomic profiling of genes in matured dimorphic seeds of euhalophyte Suaeda salsa

description: DEGs related to plant hormones according to GO function annotation. (XLS 118Â kb)
DOI: 10.6084/m9.figshare.c.3879505_d5.v1
title: Additional file 5: Table S4. of Transcriptomic profiling of genes in matured dimorphic seeds of euhalophyte Suaeda salsa

description: DEGs in the biosynthesis of the unsaturated fatty acid pathway. (XLS 10Â kb)
DOI: 10.6084/m9.figshare.c.3878275_d2
title: Additional file 2: of Comparative transcriptome analysis provides clues to molecular mechanisms underlying blue-green eggshell color in the Jinding duck (Anas platyrhynchos)

description: Differential expression analysis results of 464 candidate genes between all pairs of 4 duck groups. These candidate genes were consistently differentially (q
DOI: 10.6084/m9.figshare.c.3878275_d1.v1
title: Additional file 1: of Comparative transcriptome analysis provides clues to molecular mechanisms underlying blue-green eggshell color in the Jinding duck (Anas platyrhynchos)

description: A whole list of genes, of which expression has been successfully compared between all pairs of 4 duck groups. BSD1 & 2 represent blue-shelled duck group 1 & 2, and WSD1 & 2 indicate white-shelled duck group 1 & 2. Expression levels of genes in each group were presented as FPKM values which were calculated by Cuffdiff using three biological replicates per group. Changes of abundance between all pairs of 4 groups were tested using one-side t-test. A q value of less than 0.05 indicated that a change of abundance was significantly different between two groups. (XLSX 6970Â kb)
DOI: 10.6084/m9.figshare.c.3878275_d1
title: Additional file 1: of Comparative transcriptome analysis provides clues to molecular mechanisms underlying blue-green eggshell color in the Jinding duck (Anas platyrhynchos)

description: A whole list of genes, of which expression has been successfully compared between all pairs of 4 duck groups. BSD1 & 2 represent blue-shelled duck group 1 & 2, and WSD1 & 2 indicate white-shelled duck group 1 & 2. Expression levels of genes in each group were presented as FPKM values which were calculated by Cuffdiff using three biological replicates per group. Changes of abundance between all pairs of 4 groups were tested using one-side t-test. A q value of less than 0.05 indicated that a change of abundance was significantly different between two groups. (XLSX 6970Â kb)
DOI: 10.6084/m9.figshare.c.3878260_d3
title: MOESM3 of Transcriptomic meta-analysis identifies gene expression characteristics in various samples of HIV-infected patients with nonprogressive disease

description: Additional file 3: Table S3A. All the DEGs in nonprogressors of the three types of samples. Table S3B. All the down-regulated DEGs in nonprogressors of the three types of samples.
DOI: 10.6084/m9.figshare.c.3878260_d3.v1
title: MOESM3 of Transcriptomic meta-analysis identifies gene expression characteristics in various samples of HIV-infected patients with nonprogressive disease

description: Additional file 3: Table S3A. All the DEGs in nonprogressors of the three types of samples. Table S3B. All the down-regulated DEGs in nonprogressors of the three types of samples.
DOI: 10.6084/m9.figshare.c.3878260_d2.v1
title: MOESM2 of Transcriptomic meta-analysis identifies gene expression characteristics in various samples of HIV-infected patients with nonprogressive disease

description: Additional file 2: Table S2A. All the DEGs in nonprogressors of whole blood. Table S2B. All the DEGs in nonprogressors of CD4+ T cells. Table S3C. All the DEGs in nonprogressors of CD8+ T cells.
DOI: 10.6084/m9.figshare.c.3878248_d4.v1
title: MOESM4 of Associations of two-pore domain potassium channels and triple negative breast cancer subtype in The Cancer Genome Atlas: systematic evaluation of gene expression and methylation

description: Additional file 4: Table S4. Annotation and expression correlation for all K2p methylation loci associated with triple negative subtype.
DOI: 10.6084/m9.figshare.c.3878260_d2
title: MOESM2 of Transcriptomic meta-analysis identifies gene expression characteristics in various samples of HIV-infected patients with nonprogressive disease

description: Additional file 2: Table S2A. All the DEGs in nonprogressors of whole blood. Table S2B. All the DEGs in nonprogressors of CD4+ T cells. Table S3C. All the DEGs in nonprogressors of CD8+ T cells.
DOI: 10.6084/m9.figshare.c.3878248_d4
title: MOESM4 of Associations of two-pore domain potassium channels and triple negative breast cancer subtype in The Cancer Genome Atlas: systematic evaluation of gene expression and methylation

description: Additional file 4: Table S4. Annotation and expression correlation for all K2p methylation loci associated with triple negative subtype.
DOI: 10.6084/m9.figshare.c.3878260_d1
title: MOESM1 of Transcriptomic meta-analysis identifies gene expression characteristics in various samples of HIV-infected patients with nonprogressive disease

description: Additional file 1: Table S1A. The 20 most significantly up-regulated and 20 most significantly down-regulated genes in nonprogressors. Table S2B. The 20 most significantly up-regulated and 20 most significantly down-regulated genes in nonprogressors of CD4+ T cells. Table S3C. The 20 most significantly up-regulated and 20 most significantly down-regulated genes in nonprogressors of CD8+ T cells.