cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6233771
title: Additional file 2 of RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

description: This additional file contains target list for the validation set from PDB25 consisting of 1267 proteins. (TXT 7.42 kb)
DOI: 10.6084/m9.figshare.6233771.v1
title: Additional file 2 of RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

description: This additional file contains target list for the validation set from PDB25 consisting of 1267 proteins. (TXT 7.42 kb)
DOI: 10.6084/m9.figshare.6233798
title: Additional file 3 of RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

description: This additional file contains target list for the testing set from PDB25 consisting of 1267 proteins. (TXT 7.42 kb)
DOI: 10.6084/m9.figshare.6233798.v1
title: Additional file 3 of RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

description: This additional file contains target list for the testing set from PDB25 consisting of 1267 proteins. (TXT 7.42 kb)
DOI: 10.6084/m9.figshare.6233816
title: Additional file 4 of RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

description: This additional file contains target list for the testing set from CASP11 consisting of 85 proteins. (TXT 0.51 kb)
DOI: 10.6084/m9.figshare.6233816.v1
title: Additional file 4 of RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

description: This additional file contains target list for the testing set from CASP11 consisting of 85 proteins. (TXT 0.51 kb)
DOI: 10.6084/m9.figshare.6233834
title: Additional file 5 of RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

description: This additional file contains target list for the testing set from CASP12 consisting of 40 proteins. (TXT 0.24 kb)
DOI: 10.6084/m9.figshare.6233834.v1
title: Additional file 5 of RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

description: This additional file contains target list for the testing set from CASP12 consisting of 40 proteins. (TXT 0.24 kb)
DOI: 10.6084/m9.figshare.6233837
title: Additional file 10: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S10. FPKM values of all expressed transcripts. (XLS 7921 kb)
DOI: 10.6084/m9.figshare.6233837.v1
title: Additional file 10: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S10. FPKM values of all expressed transcripts. (XLS 7921 kb)
DOI: 10.6084/m9.figshare.6233849
title: Additional file 6 of RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

description: This additional file contains target list for the training set from PDB25 consisting of 5046 proteins. (TXT 29.5 kb)
DOI: 10.6084/m9.figshare.6233849.v1
title: Additional file 6 of RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

description: This additional file contains target list for the training set from PDB25 consisting of 5046 proteins. (TXT 29.5 kb)
DOI: 10.6084/m9.figshare.6233858
title: Additional file 11: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S11. DEGs encoding regulators of flower development. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6233858.v1
title: Additional file 11: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S11. DEGs encoding regulators of flower development. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6233873
title: Additional file 12: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S12. FPKM values of DEGs encoding constituents of the floral quartet model (FQM). (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6233873.v1
title: Additional file 12: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S12. FPKM values of DEGs encoding constituents of the floral quartet model (FQM). (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6233876
title: Additional file 3: of Basic leucine zipper transcription factor SlbZIP1 mediates salt and drought stress tolerance in tomato

description: Table S1. Gene products of annotated genes or with sequence similarity showing at least 2-fold change in transcript abundance (pâ &lt;â 0.05) in leaves of SlbZIP1-RNAi line Ri2 compared with WT plants. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.6233876.v1
title: Additional file 3: of Basic leucine zipper transcription factor SlbZIP1 mediates salt and drought stress tolerance in tomato

description: Table S1. Gene products of annotated genes or with sequence similarity showing at least 2-fold change in transcript abundance (pâ &lt;â 0.05) in leaves of SlbZIP1-RNAi line Ri2 compared with WT plants. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.6233891
title: Additional file 1: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S1. Primer sequences of selected unigenes in qRT-PCR. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6233891.v1
title: Additional file 1: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S1. Primer sequences of selected unigenes in qRT-PCR. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6233906
title: Additional file 2: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S2. Categorization and abundance of reads. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6233906.v1
title: Additional file 2: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S2. Categorization and abundance of reads. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6233924
title: Additional file 3: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S3. DEGs in F-vs-S paired comparisons. (XLSX 4773 kb)
DOI: 10.6084/m9.figshare.6233924.v1
title: Additional file 3: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S3. DEGs in F-vs-S paired comparisons. (XLSX 4773 kb)
DOI: 10.6084/m9.figshare.6233939
title: Additional file 4: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S4. DEGs in S-vs-T paired comparisons. (XLS 3850 kb)
DOI: 10.6084/m9.figshare.6233939.v1
title: Additional file 4: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S4. DEGs in S-vs-T paired comparisons. (XLS 3850 kb)
DOI: 10.6084/m9.figshare.6233957
title: Additional file 5: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S5. DEGs in T-vs-FO paired comparisons. (XLS 3651 kb)
DOI: 10.6084/m9.figshare.6233957.v1
title: Additional file 5: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S5. DEGs in T-vs-FO paired comparisons. (XLS 3651 kb)
DOI: 10.6084/m9.figshare.6233972
title: Additional file 6: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S6. KEGG pathway enrichment analysis of DEGs identified in F-vs-S paired comparisons. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6233972.v1
title: Additional file 6: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S6. KEGG pathway enrichment analysis of DEGs identified in F-vs-S paired comparisons. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6233987
title: Additional file 7: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S7. KEGG pathway enrichment analysis of DEGs identified in S-vs-T paired comparisons. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.6233987.v1
title: Additional file 7: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S7. KEGG pathway enrichment analysis of DEGs identified in S-vs-T paired comparisons. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.6234002
title: Additional file 8: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S8. KEGG pathway enrichment analysis of DEGs identified in T-vs-FO paired comparisons. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6234002.v1
title: Additional file 8: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S8. KEGG pathway enrichment analysis of DEGs identified in T-vs-FO paired comparisons. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6234020
title: Additional file 9: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S9. Selected DEGs in auxin biosynthesis, transport, and signal transduction pathway. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6234020.v1
title: Additional file 9: of Identification of genes regulating ovary differentiation after pollination in hazel by comparative transcriptome analysis

description: Table S9. Selected DEGs in auxin biosynthesis, transport, and signal transduction pathway. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6234074
title: Additional file 1: of Artemisia Capillaris leaves inhibit cell proliferation and induce apoptosis in hepatocellular carcinoma

description: Raw data from cell viability, cytochrome c releasing cells, TUNEL positive cells, expression ratio of apoptosis/signaling molecules, and animal experiments. (XLS 64 kb)
DOI: 10.6084/m9.figshare.6234074.v1
title: Additional file 1: of Artemisia Capillaris leaves inhibit cell proliferation and induce apoptosis in hepatocellular carcinoma

description: Raw data from cell viability, cytochrome c releasing cells, TUNEL positive cells, expression ratio of apoptosis/signaling molecules, and animal experiments. (XLS 64 kb)
DOI: 10.6084/m9.figshare.6234158
title: Additional file 1: of Acute Hepatopancreatic Necrosis Disease (AHPND) related microRNAs in Litopenaeus vannamei infected with AHPND-causing strain of Vibrio parahemolyticus

description: Table S1. Conserved miRNA families analysis of L. vannamei. (XLS 76Â kb)
DOI: 10.6084/m9.figshare.6234158.v1
title: Additional file 1: of Acute Hepatopancreatic Necrosis Disease (AHPND) related microRNAs in Litopenaeus vannamei infected with AHPND-causing strain of Vibrio parahemolyticus

description: Table S1. Conserved miRNA families analysis of L. vannamei. (XLS 76Â kb)
DOI: 10.6084/m9.figshare.6234176
title: Additional file 2: of Acute Hepatopancreatic Necrosis Disease (AHPND) related microRNAs in Litopenaeus vannamei infected with AHPND-causing strain of Vibrio parahemolyticus

description: Table S2. The potential targets of AHPND related miRNAs. (XLS 63Â kb)
DOI: 10.6084/m9.figshare.6234176.v1
title: Additional file 2: of Acute Hepatopancreatic Necrosis Disease (AHPND) related microRNAs in Litopenaeus vannamei infected with AHPND-causing strain of Vibrio parahemolyticus

description: Table S2. The potential targets of AHPND related miRNAs. (XLS 63Â kb)
DOI: 10.6084/m9.figshare.6234389
title: Additional file 1: of Genome-wide gene expression analysis in the placenta from fetus with trisomy 21

description: Supplemental data. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.6234389.v1
title: Additional file 1: of Genome-wide gene expression analysis in the placenta from fetus with trisomy 21

description: Supplemental data. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.6234560
title: Additional file 1: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S1. Primers used in qRT-PCR. (XLS 19Â kb)
DOI: 10.6084/m9.figshare.6234560.v1
title: Additional file 1: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S1. Primers used in qRT-PCR. (XLS 19Â kb)
DOI: 10.6084/m9.figshare.6234593
title: Additional file 3: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S2. All the annotated genes in the six libraries. Unique reads are reads aligned to only one position in the reference sequence. Gene coverage and RPKM values were calculated to analyze gene expression. (XLSX 3230Â kb)
DOI: 10.6084/m9.figshare.6234593.v1
title: Additional file 3: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S2. All the annotated genes in the six libraries. Unique reads are reads aligned to only one position in the reference sequence. Gene coverage and RPKM values were calculated to analyze gene expression. (XLSX 3230Â kb)
DOI: 10.6084/m9.figshare.6234605
title: Additional file 4: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S3. Summary of the number of genes (RPKM&gt;â 0) detected in the six adipose tissues of two breeds. (XLS 20Â kb)
DOI: 10.6084/m9.figshare.6234605.v1
title: Additional file 4: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S3. Summary of the number of genes (RPKM&gt;â 0) detected in the six adipose tissues of two breeds. (XLS 20Â kb)
DOI: 10.6084/m9.figshare.6234617
title: Additional file 5: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S4. The most highly expressed 47 genes and their RPKM values in the six samples. (XLS 24Â kb)
DOI: 10.6084/m9.figshare.6234617.v1
title: Additional file 5: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S4. The most highly expressed 47 genes and their RPKM values in the six samples. (XLS 24Â kb)
DOI: 10.6084/m9.figshare.6234629
title: Additional file 6: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S5. DE genes with the FDR value≤0.001 and the absolute value of log 2 Ratio ≥ 1. Gene Length, length of all exon in gene; Expression, reads number that uniquely mapped to gene; P value, p value for hypothesis testing. (XLS 2504 kb)
DOI: 10.6084/m9.figshare.6234629.v1
title: Additional file 6: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S5. DE genes with the FDR value≤0.001 and the absolute value of log 2 Ratio ≥ 1. Gene Length, length of all exon in gene; Expression, reads number that uniquely mapped to gene; P value, p value for hypothesis testing. (XLS 2504 kb)
DOI: 10.6084/m9.figshare.6234641
title: Additional file 7: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S6. GO analysis of DE genes with corrected P value ≤0.05. The letter “n” is number of DE genes which are annotated to this ontology. The letter “m” is number of DE genes which are annotated to this term. (XLS 789 kb)
DOI: 10.6084/m9.figshare.6234641.v1
title: Additional file 7: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S6. GO analysis of DE genes with corrected P value ≤0.05. The letter “n” is number of DE genes which are annotated to this ontology. The letter “m” is number of DE genes which are annotated to this term. (XLS 789 kb)
DOI: 10.6084/m9.figshare.6234650
title: Additional file 8: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S7. KEGG pathway analysis of DE genes with Q value â ¤1. Significantly enriched biological pathways were identified in DE genes based on the entire genome background. Q value is a P value that has been adjusted for the FDR value. Pathways with Q value â ¤0.05 are thought to be significantly enriched. (XLS 105Â kb)
DOI: 10.6084/m9.figshare.6234650.v1
title: Additional file 8: of Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition

description: Table S7. KEGG pathway analysis of DE genes with Q value â ¤1. Significantly enriched biological pathways were identified in DE genes based on the entire genome background. Q value is a P value that has been adjusted for the FDR value. Pathways with Q value â ¤0.05 are thought to be significantly enriched. (XLS 105Â kb)
DOI: 10.6084/m9.figshare.6234890
title: The Effect of Controlled Shot Peening on the Microstructure and Fatigue Behavior of Wet Copper-Based Powder Metallurgy Friction Plates

description: The effects of shot peening treatments on the microstructure and fatigue behavior of the teeth root in wet copper-based powder metallurgy friction plates were investigated and an efficient method for selecting optimal shot peening parameters for friction plates was proposed. Different experimental processes including microscopy observation, microhardness, roughness and X-ray diffraction measurements have been performed to characterize the treated surface of specimens. It is found that fatigue life of friction plates firstly increases and then decreases with the increase of Almen intensity, and the optimal fatigue life has improved over 55%. It is considered that both surface grain refinement and high residual compressive stress are the main ingredients responsible for the improved fatigue life. With further increase of Almen intensity, surface roughness of the teeth root gradually increases to a critical point, where rough peened surface may induce crack initiation due to stress concentration, and finally lead fatigue deteriorate.
DOI: 10.6084/m9.figshare.6234890.v1
title: The Effect of Controlled Shot Peening on the Microstructure and Fatigue Behavior of Wet Copper-Based Powder Metallurgy Friction Plates

description: The effects of shot peening treatments on the microstructure and fatigue behavior of the teeth root in wet copper-based powder metallurgy friction plates were investigated and an efficient method for selecting optimal shot peening parameters for friction plates was proposed. Different experimental processes including microscopy observation, microhardness, roughness and X-ray diffraction measurements have been performed to characterize the treated surface of specimens. It is found that fatigue life of friction plates firstly increases and then decreases with the increase of Almen intensity, and the optimal fatigue life has improved over 55%. It is considered that both surface grain refinement and high residual compressive stress are the main ingredients responsible for the improved fatigue life. With further increase of Almen intensity, surface roughness of the teeth root gradually increases to a critical point, where rough peened surface may induce crack initiation due to stress concentration, and finally lead fatigue deteriorate.
DOI: 10.6084/m9.figshare.6235028
title: Antiproliferative effect of urolithin A, the ellagic acid-derived colonic metabolite, on hepatocellular carcinoma HepG2.2.15 cells by targeting Lin28a/let-7a axis

description: An abnormality in the Lin28/let-7a axis is relevant to the progression of hepatitis B virus (HBV)-positive hepatocellular carcinoma (HCC), which could be a novel therapeutic target for this malignant tumor. The present study aimed to investigate the antiproliferative and anti-invasive effects of urolithin A in a stable full-length HBV gene integrated cell line HepG2.2.15 using CCK-8 and transwell assays. The RNA and protein expressions of targets were assessed by quantitative PCR and western blot, respectively. Results revealed that urolithin A induced cytotoxicity in HepG2.2.15 cells, which was accompanied by the cleavage of caspase-3 protein and down-regulation of Bcl-2/Bax ratio. Moreover, urolithin A suppressed the protein expressions of Sp-1, Lin28a, and Zcchc11, and elevated the expression of microRNA let-7a. Importantly, urolithin A also regulated the Lin28a/let-7a axis in transient HBx-transfected HCC HepG2 cells. Furthermore, urolithin A decelerated the HepG2.2.15 cell invasion, which was involved in suppressing the let-7a downstream factors HMGA2 and K-ras. These findings indicated that urolithin A exerted the antiproliferative effect by regulating the Lin28a/let-7a axis and may be a potential supplement for HBV-infected HCC therapy.
DOI: 10.6084/m9.figshare.6235028.v1
title: Antiproliferative effect of urolithin A, the ellagic acid-derived colonic metabolite, on hepatocellular carcinoma HepG2.2.15 cells by targeting Lin28a/let-7a axis

description: An abnormality in the Lin28/let-7a axis is relevant to the progression of hepatitis B virus (HBV)-positive hepatocellular carcinoma (HCC), which could be a novel therapeutic target for this malignant tumor. The present study aimed to investigate the antiproliferative and anti-invasive effects of urolithin A in a stable full-length HBV gene integrated cell line HepG2.2.15 using CCK-8 and transwell assays. The RNA and protein expressions of targets were assessed by quantitative PCR and western blot, respectively. Results revealed that urolithin A induced cytotoxicity in HepG2.2.15 cells, which was accompanied by the cleavage of caspase-3 protein and down-regulation of Bcl-2/Bax ratio. Moreover, urolithin A suppressed the protein expressions of Sp-1, Lin28a, and Zcchc11, and elevated the expression of microRNA let-7a. Importantly, urolithin A also regulated the Lin28a/let-7a axis in transient HBx-transfected HCC HepG2 cells. Furthermore, urolithin A decelerated the HepG2.2.15 cell invasion, which was involved in suppressing the let-7a downstream factors HMGA2 and K-ras. These findings indicated that urolithin A exerted the antiproliferative effect by regulating the Lin28a/let-7a axis and may be a potential supplement for HBV-infected HCC therapy.