cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9829925
title: Additional file 3: of Chlorophyll fluorescence analysis in diverse rice varieties reveals the positive correlation between the seedlings salt tolerance and photosynthetic efficiency

description: Table S3. Chlorophyll fluorescence and injury score of 232 accessions and their subpopulation assignment (XLSX 33 kb)
DOI: 10.6084/m9.figshare.9829925.v1
title: Additional file 3: of Chlorophyll fluorescence analysis in diverse rice varieties reveals the positive correlation between the seedlings salt tolerance and photosynthetic efficiency

description: Table S3. Chlorophyll fluorescence and injury score of 232 accessions and their subpopulation assignment (XLSX 33 kb)
DOI: 10.6084/m9.figshare.9829922.v1
title: Additional file 2: of Chlorophyll fluorescence analysis in diverse rice varieties reveals the positive correlation between the seedlings salt tolerance and photosynthetic efficiency

description: Table S2. The quantum yield calculated from the ratio of treatment to control (T/C) values of each parameter in eight varieties (XLSX 14 kb)
DOI: 10.6084/m9.figshare.9829322
title: Data.xlsx

description: The Data belong to a manuscript entitled "Grazing depress forage plant seeds cycled from herbage to livestock to soil on the Loess Plateau"<br>
DOI: 10.6084/m9.figshare.9829538
title: Silver, titanium dioxide, and zinc oxide nanoparticles trigger miRNA/isomiR expression changes in THP-1 cells that are proportional to their health hazard potential

description: After over a decade of nanosafety research, it is indisputable that the vast majority of nano-sized particles induce a plethora of adverse cellular responses – the severity of which is linked to the material’s physicochemical properties. Differentiated THP-1 cells were previously exposed for 6 h and 24 h to silver, titanium dioxide, and zinc oxide nanoparticles at the maximum molar concentration at which no more than 15% cellular cytotoxicity was observed. All three nanoparticles differed in extent of induction of biological pathways corresponding to immune response signaling and metal ion homeostasis. In this study, we integrated gene and miRNA expression profiles from the same cells to propose miRNA biomarkers of adverse exposure to metal-based nanoparticles. We employed RNA sequencing together with a quantitative strategy that also enables analysis of the overlooked repertoire of length and sequence miRNA variants called isomiRs. Whilst only modest changes in expression were observed within the first 6 h of exposure, the miRNA/isomiR (miR) profiles of each nanoparticle were unique. Via canonical correlation and pathway enrichment analyses, we identified a co-regulated miR-mRNA cluster, predicted to be highly relevant for cellular response to metal ion homeostasis. These miRs were annotated to be canonical or variant isoforms of hsa-miR-142-5p, -342-3p, -5100, -6087, -6894-3p, and -7704. Hsa-miR-5100 was differentially expressed in response to each nanoparticle in both the 6 h and 24 h exposures. Taken together, this co-regulated miR-mRNA cluster could represent potential biomarkers of sub-toxic metal-based nanoparticle exposure.
DOI: 10.6084/m9.figshare.9829322.v1
title: Data.xlsx

description: The Data belong to a manuscript entitled "Grazing depress forage plant seeds cycled from herbage to livestock to soil on the Loess Plateau"<br>
DOI: 10.6084/m9.figshare.9829538.v1
title: Silver, titanium dioxide, and zinc oxide nanoparticles trigger miRNA/isomiR expression changes in THP-1 cells that are proportional to their health hazard potential

description: After over a decade of nanosafety research, it is indisputable that the vast majority of nano-sized particles induce a plethora of adverse cellular responses – the severity of which is linked to the material’s physicochemical properties. Differentiated THP-1 cells were previously exposed for 6 h and 24 h to silver, titanium dioxide, and zinc oxide nanoparticles at the maximum molar concentration at which no more than 15% cellular cytotoxicity was observed. All three nanoparticles differed in extent of induction of biological pathways corresponding to immune response signaling and metal ion homeostasis. In this study, we integrated gene and miRNA expression profiles from the same cells to propose miRNA biomarkers of adverse exposure to metal-based nanoparticles. We employed RNA sequencing together with a quantitative strategy that also enables analysis of the overlooked repertoire of length and sequence miRNA variants called isomiRs. Whilst only modest changes in expression were observed within the first 6 h of exposure, the miRNA/isomiR (miR) profiles of each nanoparticle were unique. Via canonical correlation and pathway enrichment analyses, we identified a co-regulated miR-mRNA cluster, predicted to be highly relevant for cellular response to metal ion homeostasis. These miRs were annotated to be canonical or variant isoforms of hsa-miR-142-5p, -342-3p, -5100, -6087, -6894-3p, and -7704. Hsa-miR-5100 was differentially expressed in response to each nanoparticle in both the 6 h and 24 h exposures. Taken together, this co-regulated miR-mRNA cluster could represent potential biomarkers of sub-toxic metal-based nanoparticle exposure.
DOI: 10.6084/m9.figshare.9828287
title: Patient/service user involvement in medical education: A best evidence medical education (BEME) systematic review: BEME Guide No. 58

description: <b>Background:</b> The extent to which patients and service users are involved in medical education varies widely. There is a need for an up to date systematic review of the literature that examines what involvement (description), the potential outcome of such involvement (justification) and ‘why’ such involvement impacts students (clarification). <b>Methods:</b> Systematic searches of four databases were undertaken. Citations were screened and consensus reached for inclusion/exclusion of studies. Quality of study design and interventional presentation were assessed. <b>Results:</b> Of the 39 studies included in the review, 4 studies were encounter based, 17 sharing experiences, 16 with patients involved in teaching, 2 studies describing consumers as tutors, and none with involvement at the institutional level. Outcomes in terms of benefits to learners included increased empathy and understanding of illness as experienced by patients, improved communication with patients and a greater understanding of patient–center care. Educational quality assessment showed specific weaknesses in theoretical underpinning, curriculum outcomes, content or pedagogy. <b>Conclusions:</b> Patients can enrich medical education by allowing learners to explore patient-centered perspectives in holistic care. For educators this review highlights the lack of an underpinning conceptual basis for which to translate theory into practice.
DOI: 10.6084/m9.figshare.9828287.v1
title: Patient/service user involvement in medical education: A best evidence medical education (BEME) systematic review: BEME Guide No. 58

description: <b>Background:</b> The extent to which patients and service users are involved in medical education varies widely. There is a need for an up to date systematic review of the literature that examines what involvement (description), the potential outcome of such involvement (justification) and ‘why’ such involvement impacts students (clarification). <b>Methods:</b> Systematic searches of four databases were undertaken. Citations were screened and consensus reached for inclusion/exclusion of studies. Quality of study design and interventional presentation were assessed. <b>Results:</b> Of the 39 studies included in the review, 4 studies were encounter based, 17 sharing experiences, 16 with patients involved in teaching, 2 studies describing consumers as tutors, and none with involvement at the institutional level. Outcomes in terms of benefits to learners included increased empathy and understanding of illness as experienced by patients, improved communication with patients and a greater understanding of patient–center care. Educational quality assessment showed specific weaknesses in theoretical underpinning, curriculum outcomes, content or pedagogy. <b>Conclusions:</b> Patients can enrich medical education by allowing learners to explore patient-centered perspectives in holistic care. For educators this review highlights the lack of an underpinning conceptual basis for which to translate theory into practice.
DOI: 10.6084/m9.figshare.9828239
title: bw170813-44 10Hzprh.csv

description: Sample CATS data of a blue whale<br>
DOI: 10.6084/m9.figshare.9828239.v1
title: bw170813-44 10Hzprh.csv

description: Sample CATS data of a blue whale<br>
DOI: 10.6084/m9.figshare.9828173
title: Table I and Table II

description: Table I. Details the result obtained by the ResFinder v3.2 analyzes (DTU, Denmark: https://cge.cbs.dtu.dk/services/ResFinder/) [Selected% ID threshold: 30%; Selected minimum length: 20%].<br>Table II. Details the result obtained by BacMet Experimentally Confirmed database (http://bacmet.biomedicine.gu.se/).
DOI: 10.6084/m9.figshare.9828026
title: No association between latent toxoplasmosis and vitamin D concentration in human: three observational studies

description: We tested the hypothesis that the Toxoplasma-infected subjects have lower vitamin D levels in the blood serum than the Toxoplasma-free subjects by measuring the concentration of vitamin D in the serum of subjects from three independent populations tested for the Toxoplasma infection. Data include participant age and sex, calcidiol level and toxoplasmosis positivity/negativity.<br>Study A. Cross-sectional study performed on a cohort of 72 neurasthenic patientsStudy B. (Preregistered study): Case-control study performed on 400 subfertile subjectsStudy C. (Confirmation study): Cross-section study performed on 191 members of the general public
DOI: 10.6084/m9.figshare.9828026.v1
title: No association between latent toxoplasmosis and vitamin D concentration in human: three observational studies

description: We tested the hypothesis that the Toxoplasma-infected subjects have lower vitamin D levels in the blood serum than the Toxoplasma-free subjects by measuring the concentration of vitamin D in the serum of subjects from three independent populations tested for the Toxoplasma infection. Data include participant age and sex, calcidiol level and toxoplasmosis positivity/negativity.<br>Study A. Cross-sectional study performed on a cohort of 72 neurasthenic patientsStudy B. (Preregistered study): Case-control study performed on 400 subfertile subjectsStudy C. (Confirmation study): Cross-section study performed on 191 members of the general public
DOI: 10.6084/m9.figshare.9827384
title: Supplemental Table 2

description: Short- axis systolic segmental velocity and displacement in the CIA and control groups
DOI: 10.6084/m9.figshare.9827723
title: Teachers' responses to "Primary-school teachers’ conceptions about their knowledge and their educational practices in Science Education using digital educational resources" questionnaire

description: Data gathered from the implementation of a questionnaire to primary-school teachers registered in House of Sciences repository.
DOI: 10.6084/m9.figshare.9827351
title: Supplemental Tables 1 and 2

description: Supplemental data: Inflammation induced changes in left ventricular diastolic and systolic function in collagen-induced arthritis
DOI: 10.6084/m9.figshare.9827384.v1
title: Supplemental Table 2

description: Short- axis systolic segmental velocity and displacement in the CIA and control groups
DOI: 10.6084/m9.figshare.9827294
title: Salt marsh tidal rewetting experiment data

description: Data in support of dissertation chapter 4.
DOI: 10.6084/m9.figshare.9827312
title: Table 2.doc

description: Data statistics
DOI: 10.6084/m9.figshare.9827894.v1
title: Sockeye salmon demonstrate robust yet distinct transcriptomic kidney responses to rhabdovirus (IHNV) exposure and infection - collected and generated data

description: Data collected and generated as part of:<br> Polinski MP, Bradshaw JC, Rise ML, Johnson SC and Garver KA (2019) Sockeye salmon demonstrate robust yet distinct transcriptomic kidney responses to rhabdovirus (IHNV) exposure and infection. <i>Fish and Shellfish Immunology. </i>https://doi.org/10.1016/j.fsi.2019.09.042<br>
DOI: 10.25380/iastate.9827243
title: Survival, home ranges, and habitat use of white-tailed deer fawns in central Iowa

description: The data relate to a study of survival and space use by white-tailed deer fawns in central Iowa. Data include: 1. fawn home range sizes and habitat content for three survival intervals (0-30 days, 0-60 days, 0-7 months), 2. fawn locations in UTM coordinates and associated habitat type, 3. suspected causes of mortality, and 4. files for survival estimation and modeling effects of habitat on survival in three survival intervals.<br>See McGovern PG, Dinsmore SJ, Blanchong JA. Survival of white-tailed deer fawns in central Iowa, PLoS ONE http://dx.doi.org/10.25380/iastate.9827243 for more information about the study.<br>
DOI: 10.6084/m9.figshare.9827294.v1
title: Salt marsh tidal rewetting experiment data

description: Data in support of dissertation chapter 4.
DOI: 10.25380/iastate.9827243.v1
title: Survival, home ranges, and habitat use of white-tailed deer fawns in central Iowa

description: The data relate to a study of survival and space use by white-tailed deer fawns in central Iowa. Data include: 1. fawn home range sizes and habitat content for three survival intervals (0-30 days, 0-60 days, 0-7 months), 2. fawn locations in UTM coordinates and associated habitat type, 3. suspected causes of mortality, and 4. files for survival estimation and modeling effects of habitat on survival in three survival intervals.<br>See McGovern PG, Dinsmore SJ, Blanchong JA. Survival of white-tailed deer fawns in central Iowa, PLoS ONE http://dx.doi.org/10.25380/iastate.9827243 for more information about the study.<br>
DOI: 10.6084/m9.figshare.9827231
title: Gomez-Pineda_2019_EcolAppl.zip Raw data (presences and absences), Climate grids (1961-1990; RCP 6.0: 2030, 2060, 2090), maps as color figures, grid cells of the maps as ASCII format of paper "Suitable climatic habitat changes for Mexican conifers along altitudinal gradients under climatic change scenarios. Ecological Applications 2019

description: Raw data, maps as color figures, grid cells of the maps as ASCII format of paper: Gómez-Pineda E, Sáenz-Romero C, Ortega-Rodríguez J M, Blanco-García A, Madrigal-Sánchez X, Lindig-Cisneros R, López-Toledo L, Pedraza-Santos M E, Rehfeldt G E. 2019. Suitable climatic habitat changes for Mexican conifers along altitudinal gradients under climatic change scenarios. Ecological Applications.
DOI: 10.6084/m9.figshare.9827312.v1
title: Table 2.doc

description: Data statistics
DOI: 10.6084/m9.figshare.9827723.v1
title: Teachers' responses to "Primary-school teachers’ conceptions about their knowledge and their educational practices in Science Education using digital educational resources" questionnaire

description: Data gathered from the implementation of a questionnaire to primary-school teachers registered in House of Sciences repository.
DOI: 10.6084/m9.figshare.9826274
title: Insight4news Irish news related hashtagged tweet collection 26.06.2015-24.05.2017

description: <pre>The 1.5GB .tar.gz file contains a 4.3GB (uncompressed) .txt file with <b>225'559'593</b> rows, each row of which is a tweet ID.</pre><pre>These tweets have been collected in 26<i>.06.2015-24.05.2017</i> period with the <i>Hashtagger</i> platform (presented in https://doi.org/10.1145/2872427.2882982 by Shi et al.), which considered these tweets relevant to the monitored stream of news from Irish sources (The Irish Times, Irish Examiner, etc.). </pre><pre><br></pre><pre>All 225'559'593 tweets are in English (with 'en' in the 'lang' field of the json objects, privided by GNIP) and contain at least one hashtag. <br></pre><pre><br></pre><pre>Hydrate the tweet ids with Twarc (https://github.com/edsu/twarc) and write to a file. You will need to provide Twarc with a set of Twitter API keys.</pre><pre><i> twarc.py --hydrate tweet_ids.txt &gt; tweets.json</i><br></pre><pre></pre><pre>It is probably not a good idea to hydrate all the tweets in one go, and may be better to split the file into chunks and hydrate the tweets chunk-by-chunk. </pre><pre><br></pre><pre><br></pre><pre>When using the dataset, please cite the following paper, for which this dataset was generated for. <b><br></b></pre><pre><b>Addressing Information Overload through Text Mining across News and Social Media Streams</b><br></pre><pre><i>Gevorg Poghosyan</i></pre><pre>SIdEWayS'19: 5th International Workshop on Social Media World Sensors, 2019</pre><pre>https://doi.org/10.1145/3345645.3351105<br></pre>
DOI: 10.6084/m9.figshare.9827723.v3
title: Teachers' responses to "Primary-school teachers’ conceptions about their knowledge and their educational practices in Science Education using digital educational resources" questionnaire

description: Data gathered from the implementation of a questionnaire to primary-school teachers registered in House of Sciences repository.
DOI: 10.6084/m9.figshare.9827351.v1
title: Supplemental Table 1

description: Short- axis systolic segmental strain and strain rate in the CIA and control groups.
DOI: 10.6084/m9.figshare.9827723.v2
title: Teachers' responses to "Primary school teachers’ conceptions about their knowledge and their educational practices in Science Education using digital educational resources" questionnaire

description: Data gathered from the implementation of a questionnaire to primary school teachers registered in House of Sciences repository.
DOI: 10.6084/m9.figshare.9826274.v1
title: Insight4news Irish news related hashtagged tweet collection 26.06.2015-24.05.2017

description: <pre>The 1.5GB .tar.gz file contains a 4.3GB (uncompressed) .txt file with <b>225'559'593</b> rows, each row of which is a tweet ID.</pre><pre>These tweets have been collected in 26<i>.06.2015-24.05.2017</i> period with the <i>Hashtagger</i> platform (presented in https://doi.org/10.1145/2872427.2882982 by Shi et al.), which considered these tweets relevant to the monitored stream of news from Irish sources (The Irish Times, Irish Examiner, etc.). </pre><pre><br></pre><pre>All 225'559'593 tweets are in English (with 'en' in the 'lang' field of the json objects, privided by GNIP) and contain at least one hashtag. <br></pre><pre><br></pre><pre>Hydrate the tweet ids with Twarc (https://github.com/edsu/twarc) and write to a file. You will need to provide Twarc with a set of Twitter API keys.</pre><pre><i> twarc.py --hydrate tweet_ids.txt &gt; tweets.json</i><br></pre><pre></pre><pre>It is probably not a good idea to hydrate all the tweets in one go, and may be better to split the file into chunks and hydrate the tweets chunk-by-chunk. </pre><pre><br></pre><pre><br></pre><pre>When using the dataset, please cite the following paper, for which this dataset was generated for. <b><br></b></pre><pre><b>Addressing Information Overload through Text Mining across News and Social Media Streams</b><br></pre><pre><i>Gevorg Poghosyan</i></pre><pre>SIdEWayS'19: 5th International Workshop on Social Media World Sensors, 2019</pre><pre>https://doi.org/10.1145/3345645.3351105<br></pre>
DOI: 10.6084/m9.figshare.9827351.v3
title: Supplemental Tables 1 and 2

description: Supplemental data: Inflammation induced changes in left ventricular diastolic and systolic function in collagen-induced arthritis
DOI: 10.6084/m9.figshare.9827231.v1
title: Gomez-Pineda_2019_EcolAppl.zip

description: Raw data, maps as color figures, grid cells of the maps as ASCII format of paper: Gómez-Pineda E, Sáenz-Romero C, Ortega-Rodríguez J M, Blanco-García A, Madrigal-Sánchez X, Lindig-Cisneros R, López-Toledo L, Pedraza-Santos M E, Rehfeldt G E. 2019. Suitable climatic habitat changes for Mexican conifers along altitudinal gradients under climatic change scenarios. Ecological Applications.
DOI: 10.6084/m9.figshare.9827351.v2
title: Supplemental Table 1

description: Supplemental data: Inflammation induced changes in left ventricular diastolic and systolic function in collagen-induced arthritis
DOI: 10.6084/m9.figshare.9826115
title: Circular extrachromosomal DNA promotes accessible chromatin and high oncogene expression

description: The pixel intensity quantification of ATAC-see confocal images. It is used for creating the Extended Data Figure 7d of the manuscript entitled "Circular extrachromosomal DNA promotes accessible chromatin and high oncogene expression" . The brief ATAC-see method for metaphase chromosome spread is as follow: metaphase sample was prepared onto a 1-mm coverslip and incubated with 50 nM of ATTO-590 transposome under 37°C for 30 min in the dark. After washed twice by 2× SSC with 0.01% SDS for 15 min, and once by 2× SSC with 0.2% Tween-20 for 15 min, sample was subjected to FISH procedures, and finally stained by 1 µg/ml DAPI and mount with VECTASHIELD antifade mounting media (Vector Laboratories).<br>
DOI: 10.6084/m9.figshare.9826112
title: hashtagged English tweet collection filtered from Web Archive's downloads 26.03.2013-24.05.2017

description: The 2.1GB .tar.gz file contains a 6.6GB (uncompressed) .txt file with <b>346'613'181</b> rows, each row of which is a tweet ID.This dataset is distilled from the The Internet Archive’s downloaded Twitter “Spitzer” stream (https://archive.org/details/twitterstream) by filtering the English tweets containing at least a single hashtag.<br><br><br>This collection has periods when there were no tweets downloaded due to technical issues on the Web Archive's servers. These periods are 2014.01.01 - 2014.02.05, 2015.01.01 - 2015.03.22, 2015.11.16 - 2015.11.17, 2015.11.22 - 2015.11.30, 2015.12.06 - 2015.12.15, 2016.02.10 - 2016.02.14, 2016.02.27 - 2016.03.16.<br><br><br>Hydrate the tweet ids with Twarc (https://github.com/edsu/twarc) and write to a file. You will need to provide Twarc with a set of Twitter API keys.<br><i>twarc.py --hydrate tweet_ids.txt &gt; tweets.json</i><br>It is probably not a good idea to hydrate all the tweets in one go, and may be better to split the file into chunks and hydrate the tweets chunk-by-chunk.
DOI: 10.6084/m9.figshare.9827231.v2
title: Gomez-Pineda_2019_EcolAppl.zipRaw data, maps as color figures, grid cells of the maps as ASCII format of paper "Suitable climatic habitat changes for Mexican conifers along altitudinal gradients under climatic change scenarios. Ecological Applications 2019

description: Raw data, maps as color figures, grid cells of the maps as ASCII format of paper: Gómez-Pineda E, Sáenz-Romero C, Ortega-Rodríguez J M, Blanco-García A, Madrigal-Sánchez X, Lindig-Cisneros R, López-Toledo L, Pedraza-Santos M E, Rehfeldt G E. 2019. Suitable climatic habitat changes for Mexican conifers along altitudinal gradients under climatic change scenarios. Ecological Applications.
DOI: 10.6084/m9.figshare.9825680
title: Metadata record for: A database for using machine learning and data mining techniques for coronary artery disease diagnosis

description: This dataset contains key characteristics about the data described in the Data Descriptor A database for using machine learning and data mining techniques for coronary artery disease diagnosis. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format<br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.