cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/hfhwmn8w24
title: Pasion et al. Location Data

description: This data contains weather and geographic information collected across 12 locations within the Northern-hemisphere.
DOI: 10.17632/xk9mg8t7f4
title: Two peak deconvolution LIR - Matlab function

description: Matlab function for the deconvolution of overlapping emissions: broad-emission with sharp emission, and final luminescence intensity ratio calculation as an output. The deconvolution is performed by Gaussian transformed by Jacobi to wavelength scale.
DOI: 10.6084/m9.figshare.14265050.v1
title: Sample Metadata

description: Sample metadata including species of origin, sex, and other relevant details about the bats involved in this study.
DOI: 10.6084/m9.figshare.27184314.v1
title: Supplemental File 3: <i>P. eatonii </i>repeat annotation

description: Repeat annotation in GFF format of the genome assembly of a <i>Penstemon eatonii</i> specimen collected in American Fork Canyon in Utah in 2023.
DOI: 10.6084/m9.figshare.7098002.v1
title: Supplementary Material for: Early Loss of Forkhead Transcription Factor, O Subgroup, Member 1 Protein in the Development of Pancreatic Ductal Adenocarcinoma

description: <b><i>Objectives:</i></b> Forkhead transcription factor, O subgroup, member 1 (FOXO1) is a regulatory protein that plays an essential role in cellular homeostasis. A biological function as a tumor suppressor has been proposed. Here, we examined FOXO1 expression in human pancreatic ductal adenocarcinoma (PDAC) and its precursor lesions. <b><i>Methods:</i></b> We immunohistochemically labeled tissue samples from 47 patients with PDAC for FOXO1 protein. In addition, we extracted data from the Cancer Genome Atlas and the Cancer Cell Line Encyclopedia and studied a potential association with well-established genetic variants. A publicly available microarray dataset of 102 PDAC samples was used to explore the influence of <i>FOXO1</i> expression on patients’ clinical outcome. <b><i>Results:</i></b> Normal ductal epithelium universally expressed nuclear and cytoplasmic FOXO1. Reduced expression was observed in PanIN lesions and PDAC of all cases. Analysis of several datasets showed that the <i>FOXO1</i> gene transcript levels do not correlate with <i>KRAS</i>, <i>TP53</i>, <i>SMAD4</i>, or <i>CDKN2A</i> mutation status, but positively correlate with patients’ outcomes. <b><i>Conclusions:</i></b> Loss of FOXO1 protein is identified as an early event during PDAC development and may be independent of the top 4 mutated cancer genes. Because of its strong expression in normal ductal cells, immunohistochemical detection of FOXO1 can function as a valuable test to establish the diagnosis of transformation and malignancy in pancreatic tissues.
DOI: 10.17605/osf.io/dz2aj
title: Inhibitory Control Facilitates Learning New Knowledge Based on Existing Knowledge in Cross-linguistic Word Contexts

description: This is about the storage of raw data, processing code and other appendix materials for the article titled "Inhibitory Control Facilitates Learning New Knowledge Based on Existing Knowledge in Cross-linguistic Word Contexts".
DOI: 10.17632/22xhb5jsvn
title: Thermal affect: A six-dimensional semantic space to assess outdoor thermal comfort

description: Here, we proposed a six-dimensional semantic framework for outdoor thermal comfort assessments comprising four descriptive - ‘thermal sensation’, ‘humidity’, ‘wind’ and ‘solar radiation,’ plus two affective - ‘thermal pleasure’ and ‘thermal intensity’ dimensions. In Phase 1 an online questionnaire recruited 135 native English-speakers to place 76 climatic adjectives into this six-dimensional semantic space. Phase 2 launched a field study with another 22 subjects locating real-time outdoor thermal experiences in the same semantic space. They were then asked to select from a subset of the 76 climatic adjectives those that best described their right here- right-now thermal experience. Validation was then performed by comparing coordinates of the 31 most frequently chosen adjectives in Phase 2 with those assigned to them in Phase 1. Good correlations (R2 &gt; 0.65) of adjectives’ coordinates between the two research phases indicate consistency regarding which adjectives best describe specific scenarios, regardless of seasons, locations, or current exposures. In this database, we uploaded the average adjectives' scores achieved in the online questionnaire and the Retrieval process of the 10 most likely climatic adjectives to describe the thermal feelings based on the right-here-right-now thermal experience.
DOI: 10.17632/dnjt9cmj87
title: Young geological deformations in Hungary

description: The new 1:500 000 scale map of young geological deformations in Hungary completed in 2020 based upon detailed seismic interpretations and upon compilation of the results of many previous regional and local neotectonic studies.
DOI: 10.17632/ymn3ykkmyx
title: A systematic CRISPR screen defines mutational mechanisms underpinning signatures caused by replication errors and endogenous DNA damage

description: Mutational signatures are imprints of pathophysiological processes arising through tumorigenesis. We generated isogenic CRISPR–Cas9 knockouts (∆) of 43 genes in human induced pluripotent stem cells, cultured them in the absence of added DNA damage and performed whole-genome sequencing of 173 subclones. ∆OGG1, ∆UNG, ∆EXO1, ∆RNF168, ∆MLH1, ∆MSH2, ∆MSH6, ∆PMS1 and ∆PMS2 produced marked mutational signatures indicative of them being critical mitigators of endogenous DNA modifications. Detailed analyses revealed mutational mechanistic insights, including how 8-oxo-2′-deoxyguanosine elimination is sequence context specific while uracil clearance is sequence context independent. Mismatch repair (MMR) deficiency signatures are engendered by oxidative damage (C > A transversions) and differential misincorporation by replicative polymerases (T > C and C > T transitions), and we propose a reverse template slippage model for T > A transversions. ∆MLH1, ∆MSH6 and ∆MSH2 signatures were similar to each other but distinct from ∆PMS2. Finally, we developed a classifier, MMRDetect, where application to 7,695 whole-genome-sequenced cancers showed enhanced detection of MMR-deficient tumors, with implications for responsiveness to immunotherapies.
DOI: 10.6084/m9.figshare.27184440.v1
title: Supplemental File 6: Peptide file of the <i>P. eatonii</i> assembly

description: Peptide file of the genome assembly of a <i>Penstemon eatonii</i> specimen collected in American Fork Canyon in Utah in 2023.
DOI: 10.6084/m9.figshare.5501515.v1
title: Table S1 from Resurrecting ancestral genes in bacteria to interpret ancient biosignatures

description: Two datasets, the geologic record and the genetic content of extant organisms, provide complementary insights into the history of how key molecular components have shaped or driven global environmental and macroevolutionary trends. Changes in global physico-chemical modes over time are thought to be a consistent feature of this relationship between Earth and life, as life is thought to have been optimizing protein functions for the entirety of its approximately 3.8 billion years of history on the Earth. Organismal survival depends on how well critical genetic and metabolic components can adapt to their environments, reflecting an ability to optimize efficiently to changing conditions. The geologic record provides an array of biologically independent indicators of macroscale atmospheric and oceanic composition, but provides little in the way of the exact behaviour of the molecular components that influenced the compositions of these reservoirs. By reconstructing sequences of proteins that might have been present in ancient organisms, we can downselect to a subset of possible sequences that may have been optimized to these ancient environmental conditions. How can one use modern life to reconstruct ancestral behaviours? Configurations of ancient sequences can be inferred from the diversity of extant sequences, and then resurrected in the laboratory to ascertain their biochemical attributes. One way to augment sequence-based, single-gene methods to obtain a richer and more reliable picture of the deep past, is to resurrect inferred ancestral protein sequences in living organisms, where their phenotypes can be exposed in a complex molecular-systems context, and to then link consequences of those phenotypes to biosignatures that were preserved in the independent historical repository of the geological record. As a first step beyond single-molecule reconstruction to the study of functional molecular systems, we present here the ancestral sequence reconstruction of the beta-carbonic anhydrase protein. We assess how carbonic anhydrase proteins meet our selection criteria for reconstructing ancient biosignatures in the laboratory, which we term paleophenotype reconstruction.
DOI: 10.17632/tjyx29yjgh
title: Data for: Tick species diversity and population dynamics of Ixodes ricinus in Galicia (NW Spain)

description: Supplementary Table 1. Includes data on the molecular characterization of tick isolates. Supplementary Table 2. Study 1 includes raw data on the number of ticks considering species and stage collected in every sampling site (NW Spain). Supplementary Table 3. Study 2 includes raw data on the number of ticks considering species and stage monthly collected in three diferent sampling areas during two complete years. Data used for GLMN analysis was also included.
DOI: 10.6084/m9.figshare.1112749.v1
title: The causes and consequences of changes in virulence following pathogen host shifts

description: Phylogeny of Drosophilidae
DOI: 10.6084/m9.figshare.13186532.v1
title: Mapping Suitable Great Ape habitat in and around the Lobéké National Park, South-East Cameroon

description: The data contains great apes (chimpanzee and gorilla) occurrence points (csv file) from the Lobeke National Park and its surrounding forest management units. The data were prepared using detailed survey data obtainable from the IUCN APES database (http://apes.eva.mpg.de/). However, the raw data has been added to the folder: detail_survey_data. In addition to the survey data, GIS layers (predictor variables) used for modeling the occurrence data have been equally attached as Tiff files and Ascii grid files (.asc). The Tiff, ascii and csv files are in the folder: modeling_data<br>
DOI: 10.6084/m9.figshare.14782737.v9
title: Observational and modelled data

description: To evaluate model performance, we integrated several types of data collected in the ESI and Scotian Shelf. We also uploaded the model configuration and model results.
DOI: 10.6084/m9.figshare.21547941.v1
title: upload commodity data

description: The data set including commodity futures data and Fama-French asset pricing factors from September 1960 to September 2020.
DOI: 10.6084/m9.figshare.5126698.v1
title: Supplementary Material for: Evaluating Dissociated Optic Nerve Fiber Layer Appearance Using En Face Layer Imaging Produced by Optical Coherence Tomography

description: <b><i>Purpose:</i></b> To investigate the incidence of and risk factors for a dissociated optic nerve fiber layer (DONFL) appearance after pars plana vitrectomy (PPV). <b><i>Methods:</i></b> We retrospectively reviewed 189 eyes that underwent PPV with internal limiting membrane removal and judged the presence/absence of an apparent DONFL based on en face layer images produced by spectral-domain optical coherence tomography (SD-OCT). <b><i>Results:</i></b> An apparent DONFL was observed in 47 (24.9%) eyes. The incidence of an apparent DONFL was significantly higher in the macular hole (MH) group (76.5%) than in the non-MH group (epiretinal membrane, diabetic macular edema, retinal vein occlusion, and others; 4.9%; p &lt; 0.001). In the logistic regression analysis, surgical indication for MH was identified as the most significant DONFL risk factor (odds ratio 63.7; p = 1.05 × 10<sup>-8</sup>). <b><i>Conclusion:</i></b> Postoperative OCT en face layer imaging clarified that MH eyes are liable to have an apparent DONFL following PPV.
DOI: 10.17632/83tynj2x8z
title: Dataset Of High-Throughput Ligand Screening Against the RNA Packaging Signals Regulating Hepatitis B Virus Nucleocapsid Formation

description: Raw data and average/SEM calculations for the article entitled: "Dataset Of High-Throughput Ligand Screening Against the RNA Packaging Signals Regulating Hepatitis B Virus Nucleocapsid Formation"
DOI: 10.6084/m9.figshare.5732241.v1
title: Dataset of high thermal inertia residential buildings in sixteen Mediterranean locations

description: This dataset comprises the performance and geometry data of 192000 buildings for 16 climate regions (12000 per climate region). The climate regions are CYP_Larnaca, DZA_Algiers, EGY_Alexandria, ESP_Malaga, ESP_Valencia, FRA_Marseille, GRC_Athens, ISR_TelAviv, ITA_Naples, ITA_Venice, LBY_Tripoli, MAR_Casablanca, MNE_Podgorica, TUN_Tunis, TUR_Istanbul, and TUR_Izmir. The geometric data was generated using the EPSAP algorithm; the construction elements physical properties were saved from the EPSAP algorithm database; and, the performance data was obtained using the FPOP algorithm coupled to the simulation engine EnergyPlus v8.8.0.
DOI: 10.15468/dl.bwvmwx
title: Occurrence Download

description: A dataset containing 33459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Pastinaca sativa L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 33459 records from 244 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013056-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22020686.v2
title: Supplementary File 2: Information, Consent and Topic Areas for Online Delphi Round 1 Survey

description: This file contains the survey content used for the first round of a Delphi Study relating to: <strong>Delphi Consensus Study and Clinical Practice Guideline Development for Functional Electrical Stimulation to support mobility in people with an upper motor neuron lesion</strong>
DOI: 10.6084/m9.figshare.24014013.v1
title: <b>Seismicity and magmatic system of the Changbaishan intraplate volcano in East Asia</b>

description: The datasets for "Seismicity and magmatic system of the Changbaishan intraplate volcano in East Asia".
DOI: 10.17632/m6fxmcmfzz
title: chemtrain: Learning deep potential models via automatic differentiation and statistical physics

description: Neural Networks (NNs) are effective models for refining the accuracy of molecular dynamics, opening up new fields of application. Typically trained bottom-up, atomistic NN potential models can reach first-principle accuracy, while coarse-grained implicit solvent NN potentials surpass classical continuum solvent models. However, overcoming the limitations of costly generation of accurate reference data and data inefficiency of common bottom-up training demands efficient incorporation of data from many sources. This paper introduces the framework chemtrain to learn sophisticated NN potential models through customizable training routines and advanced training algorithms. These routines can combine multiple top-down and bottom-up algorithms, e.g., to incorporate both experimental and simulation data or pre-train potentials with less costly algorithms. chemtrain provides an object-oriented high-level interface to simplify the creation of custom routines. On the lower level, chemtrain relies on JAX to compute gradients and scale the computations to use available resources. We demonstrate the simplicity and importance of combining multiple algorithms in the examples of parametrizing an all-atomistic model of titanium and a coarse-grained implicit solvent model of alanine dipeptide.
DOI: 10.6084/m9.figshare.25053629.v1
title: Social survey data on parents of pupils from CoMobility schools (COMOB-P)

description: Data from computer-assisted social surveys with parents from schools participating in CoMobility project, in .sav and .csv format, survey questionnaire; variables and values dictionary; and code producing the data sets based on the raw anonymized data in R.Wave 1 for parental and children modules for N=504 parents.Wave 2 for parental and children modules for N=618 parents.
DOI: 10.15468/dl.x55ss4
title: Occurrence Download

description: A dataset containing 233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anolis Daudin, 1802",
 "Year 1000-1961"
 ]
}

 The dataset includes 233 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013058-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/c7fy75wrhr
title: High Temperature Zirconium Alloys for Fusion Energy dataset

description: Dataset accompanying the Publication entitled "High Temperature Zirconium Alloys for Fusion Energy"
DOI: 10.6084/m9.figshare.11388429.v1
title: CCC Kisoro Uganda Hypertension Study Data

description: Data from a non-communicable disease clinic in Kisoro Uganda, originally collected for patient care and quality improvement initiatives, now de-identified. Data includes patient demographics, disease measures, visit data, Clinic medication availability and voucher usage data on lapses in care and surveys of patient beliefs. Study for which the data was used was cleared by Albert Einstein College of Medicine IRB.
DOI: 10.6084/m9.figshare.20780344.v1
title: larry_invitro_adata_sub_raw.h5ad

description: These three datasets are the filtered single-cell LARRY dataset for studying cell fate in Hematopoiesis. Each dataset contains the three modality of information. Users could load them into adata using scanpy. Clone information can be accessed by adata.obsm['X_clone'], unspliced and spliced read count tables can be accessed by adata.layers['unspliced'], adata.layers['spliced']. The goal of these datasets is to provide gold standard metrics to benchmark lineage trajectory tools such as RNA Velocity.
DOI: 10.6084/m9.figshare.23935065.v1
title: Research proposal on the impact of technology in training and development

description: This study establishes the impact of technology in terms of training and development in South Africa. It includes the impact the technology has on management in terms of decision making and the impact the implementation of technology has on organization’s development and innovation and how it affects employees. According to (Rahman, 2022) training mode has a significant impact on employee performance and training evaluation. It benefits the organization by reducing employee turnover, increasing employee productivity, and contributing to higher financial returns.
DOI: 10.6084/m9.figshare.96542.v3
title: IPIP big five personality test answers

description: This is data from an online big five personality test: http://personality-testing.info/tests/BIG5.php The following items were rated on a likert scale from 1=disagree to 5=agree in relation to how much they applied to the test taker, they were presented to the taker 5 per page: [taken from http://ipip.ori.org/New_IPIP-50-item-scale.htm] [I...] q0. Am the life of the party. q1. Feel little concern for others. q2. Am always prepared. q3. Get stressed out easily. q4. Have a rich vocabulary. q5. Don't talk a lot. q6. Am interested in people. q7. Leave my belongings around. q8. Am relaxed most of the time. q9. Have difficulty understanding abstract ideas. q10. Feel comfortable around people. q11. Insult people. q12. Pay attention to details. q13. Worry about things. q14. Have a vivid imagination. q15. Keep in the background. q16. Sympathize with others' feelings. q17. Make a mess of things. q18. Seldom feel blue. q19. Am not interested in abstract ideas. q20. Start conversations. q21. Am not interested in other people's problems. q22. Get chores done right away. q23. Am easily disturbed. q24. Have excellent ideas. q25. Have little to say. q26. Have a soft heart. q27. Often forget to put things back in their proper place. q28. Get upset easily. q29. Do not have a good imagination. q30. Talk to a lot of different people at parties. q31. Am not really interested in others. q32. Like order. q33. Change my mood a lot. q34. Am quick to understand things. q35. Don't like to draw attention to myself. q36. Take time out for others. q37. Shirk my duties. q38. Have frequent mood swings. q39. Use difficult words. q40. Don't mind being the center of attention. q41. Feel others' emotions. q42. Follow a schedule. q43. Get irritated easily. q44. Spend time reflecting on things. q45. Am quiet around strangers. q46. Make people feel at ease. q47. Am exacting in my work. q48. Often feel blue. q49. Am full of ideas. On last page: gender. Chosen from a dropdown (1=male, 2=female, 3=other; 0=they did not choose) age. entered into a free response box (ages less than 18 were dropped). --- CALCULATED VALUES ---- E. = (30 + q0 - q5 + q10 - q15 + q20 - q25 + q30 - q35 + q40 - q45)/10 N. = (24 - q1 + q6 - q11 + q16 - q21 + q26 - q31 + q36 + q41 + q46)/10 A. = (24 + q2 - q7 + q12 - q17 + q22 - q27 + q32 - q37 + q42 + q47)/10 C. = (12 + q3 - q8 + q13 - q18 + q23 + q28 + q33 + q38 + q43 + q48)/10 O. = (18 + q4 - q9 + q14 - q19 + q24 - q29 + q34 + q39 + q44 + q49)/10 --- NOTES --- Javascript was used to make sure they did not miss answering any of the items.
DOI: 10.15468/dl.jbvrzg
title: Occurrence Download

description: A dataset containing 233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anolis Daudin, 1802",
 "Year 1000-1961"
 ]
}

 The dataset includes 233 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013059-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/8tkxfrdcc9
title: Pillar 3: The banking institution web server log file

description: The dataset represents the pre-processed web server log file of the commercial bank. The source of data is the web server of the bank and keeps access of web users from the year 2018. Unnecessary data saved by the web server was removed to keep the focus only on the textual content of the website. The dataset contains information about the session and does not contain any personal data of web users. The dataset offers the way to understand the behaviour of stakeholders during the year and how they comply with the Basel regulations.