cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25721/t00k-rr38
title: Informations sur les pieds de cabrette Amadieu
DOI: 10.17632/phypgd5g99.1
title: Data on Human Development Constraints

description: In the form of a composite index, the data are for the constraining factors of human development. Reflecting the three dimensions of the well-known Human Development Index, i.e., knowledge, long life, and wealth, the data on the proposed Human Development Constraint Index (HDCI) results from the composition of three 'opposing' indicators to those three dimensions, i.e., respectively, illiteracy, mortality, and unemployment rates.
DOI: 10.17632/7th2mpy8sg.1
title: Counseling Skills Training for Teachers in Pakistan

description: Data is presenting the scores on effectiveness of teacher training model.
DOI: 10.17632/c5b5kbj3jk.1
title: Effects of Complex Feeding Enrichment on the Behavior of Captive Malayan Sun Bears

description: Phase 1 Master was used to examine the effects of external stimuli (keeper presence and visitor attendance) on sun bear stereotypic behavior. All Phases Master 2.0 was used to examine the effects of complex enrichment on the stereotypic behavior of the sun bears. Monday to Friday Master was used to compare the days the complex enrichment was present to the days the complex enrichment was absent. Enrichment Use Master was used to examine the effects of complex enrichment on sun bear interaction with the devices.
DOI: 10.17632/v2sr388tk9.1
title: Single-layer Membranes for Organic Solvent Nanofiltration：A Molecular Dynamics Simulation Study and Comparative Experimental

description: Molecular dynamics solvent structured document and control document
DOI: 10.17632/vbv3tdfxwx.1
title: 16s-RNA sequencing analysis of the influence of UV radiation on the metabolic pathways of pollutants in the A2O process

description: It is currently known that the addition of ultraviolet (UV) radiation can effectively improve the removal efficiency of pollutants in sewage, but there is little knowledge about the metabolism of carbon, nitrogen and phosphorus in this process. In order to reveal the carbon, nitrogen and phosphorus metabolism pathways of activated sludge (AS) with UV radiation, five different doses of UV radiation were added to the AS. Using 16s-RNA sequencing and chemical analysis methods, through a 50-day culture study, the AS microbial community and enzyme gene changes were studied. The results show that a proper amount of UV radiation is helpful to the removal of nitrogen, and a large dose of UV radiation is not conducive to the removal of pollutants. Different doses of UV radiation can significantly change the microbial community structure of AS and the abundance of key functional enzymes. Among AS to which UV radiation is added, Bacteroidetes, Proteobacteria, Actinobacteria and Firmicutes are the advantages. 16s-RNA sequencing analysis shows that UV radiation can promote the formation of phosphoric acid, glycerol, acetyl and glyceraldehyde in carbon metabolism, as well as the decomposition of amino acids and peptide bond cleavage in nitrogen metabolism, and it is most obvious under 10 minutes of UV radiation, But UV radiation has an inhibitory effect on the pathways of specific enzyme gene function. UV radiation shows greater inhibition of phosphorus metabolism, and the addition of UV radiation cannot effectively increase the removal rate of TP.
DOI: 10.25345/c5858r
title: MassIVE MSV000088519 - GNPS - Iron Oxidizing Bacteria Exo-Metabolomics
title: Non-targted LC-MS/MS from Solid Phase Extraction (PPL) samples of culture supernatante from Iron Oxidizing Bacteria.
DOI: 10.25345/c54s2f
title: MassIVE MSV000088520 - Oxidation of whey proteins during thermal treatment characterized by a site-specific LC-MS/MS-based proteomic approach
title: Thermal treatment is often employed in food processing to tailor product properties by manipulating ingredient functionality. However, due to the presence of oxidants in many food products, these elevated temperatures may accelerate oxidation and lead to the loss of nutrients. In the present study, oxidation of different whey protein systems (pure alpha-lactalbumin (a-LA), pure beta-lactoglobulin (b-LG), a mix of a-LA and b-LG (as a whey model) and a commercial whey protein isolate (WPI)) was investigated during heat treatment at 60-90 degreeC and a UHT-like condition by LC-MS-based proteomic analysis. The relative modification levels of each oxidation site were calculated and compared among different heat treatments and sample systems. The temperature- and time-dependent oxidation was detectable in protein systems after heating at and higher than 90 degreeC, while the extent of oxidation decreased with increasing complexity of the system (a-LA &gt; b-LG &gt; whey model &gt; WPI). Trp residues in a-LA were found to be the amino acid residues most prone to oxidation during heat treatment. In b-LG-containing protein systems, Cys residues were suggested to scavenge most of the reactive oxidants and undergo oxidation-mediated disulfide rearrangement. The rearranged disulfide bonds contributed to protein aggregation (as confirmed by SDS-PAGE analysis), which was suggested to provide further physical protection against oxidation. However, no significant loss of amino acid residues was detected in the heated protein systems after acidic hydrolysis followed by HPLC analysis, which shows only a minor effect of heat treatment on protein oxidation in these pure protein systems.
DOI: 10.17632/9tsghmtc2d.1
title: Canducci et al. Supplementary Table

description: Supplementary Table 1 for Research Letter
DOI: 10.17632/ddwf94k63j.1
title: Ginsenoside compound K-loaded gold nanoparticles synthesized from Curtobacterium proimmune K3 exerts anti-gastric cancer effect via promoting PI3K/Akt-mediated apoptosis

description: Compound K (CK) is the minor ginsenoside present in fermented Panax ginseng extract. Despite the pharmacological efficacy of CK, its industrial use has been restricted due to its low water solubility and poor permeability. To overcome this defect, our study was to synthesize gold nanoparticles from CK (CK-AuNPs) to investigate their potential as anticancer candidates. To biologically synthesize CK-AuNPs, a novel strain, Curtobacterium proimmune K3, was isolated from fermented ginseng beverage, then combined with CK and gold salts to biosynthesize gold nanoparticles (CurtoCK-AuNPs). Their physicochemical characteristics were evaluated using UV-Vis spectrometry, FE-TEM, EDX, elemental mapping, XRD, SAED, DLS and TGA. CurtoCK-AuNPs exerted significant selective cytotoxic effects on AGS human gastric cancer cells. Fluorescence staining with Hoechst, propidium iodide, and MitoTracker demonstrated that CurtoCK-AuNPs induce apoptosis and mitochondrial damage, respectively. Quantitative real-time PCR and western blotting analyses showed that cytotoxic effect of CurtoCK-AuNPs were involved in apoptosis, based on their activation of Bax/Bcl-2, cytochrome c, caspase 9, and caspase 3, as well as their suppression of PI3K-Akt signaling. Furthermore, it provides data for understanding the molecular mechanisms of nanoparticles; thus, providing insight into the development of alternative medications based on gold nanoparticles of ginseng-derived CK.
DOI: 10.17632/3nt7nxnzp2.1
title: The interplay between hemostasis and immune response in biomaterial development for osteogenesis

description: RAW data for Figure 2
DOI: 10.11588/data/ck3ztx/0czsra
title: PPPE_HEI200.xlsx

description: :unav
DOI: 10.5517/ccdc.csd.ccps9tk
title: CCDC 648979: Experimental Crystal Structure Determination

description: Related Article: P.A.Slepukhin,E.F.Khmara,O.A.Kuznetsova,V.I.Fylyakova,O.V.Koryakova|2021|CSD Communication|||
DOI: 10.11588/data/ck3ztx/j3bjzz
title: PPPE_HEI30.xlsx

description: :unav
DOI: 10.11588/data/ck3ztx/bvqnnn
title: Heidelberg_afternoon.csv

description: :unav
DOI: 10.5517/ccdc.csd.cc279gqr
title: CCDC 2064684: Experimental Crystal Structure Determination

description: Related Article: Kun Zhang, David Rombach, Nicolas Yannick Nötel, Gunnar Jeschke, Dmitry Katayev|2021|CSD Communication|||
description: Related Article: Kun Zhang, David Rombach, Nicolas Yannick Nötel, Gunnar Jeschke, Dmitry Katayev|2021|Angew.Chem.,Int.Ed.|60|22487|doi:10.1002/anie.202109235
DOI: 10.11588/data/ck3ztx/p2so8h
title: Heidelberg_nighttime.csv

description: :unav
DOI: 10.11588/data/ck3ztx/emdqbm
title: README.txt

description: :unav
DOI: 10.11588/data/ck3ztx
title: Heidelberg integrated samples 2018-2020 and pseudo power plant experiment results [Data]

description: These data files show the measurement and model ffCO2 results (surface source influence vs. volume source influence approach) for the two-week integrated afternoon and nighttime samples from Heidelberg (July 2018 - June 2020). Moreover, the results of the pseudo power plant experiment for Heidelberg at 30m and 200m agl are shown.
DOI: 10.5517/ccdc.csd.cc28j3gd
title: CCDC 2100853: Experimental Crystal Structure Determination

description: Related Article: miao wei|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28jcsz
title: CCDC 2101111: Experimental Crystal Structure Determination

description: Related Article: Jose Aleman|2021|CSD Communication|||
description: Related Article: Roberto del Río-Rodríguez, Víctor Laina-Martín, Jose A. Fernández-Salas, José Alemán|2021|Chem.Commun.|57|11665|doi:10.1039/D1CC04263G
DOI: 10.5517/ccdc.csd.cc28jrg1
title: CCDC 2101473: Experimental Crystal Structure Determination

description: Related Article: Tyler Swanson, William J. Chain, Glenn P. A. Yap|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc294y9q
title: CCDC 2119913: Experimental Crystal Structure Determination

description: Related Article: Dinithi Kaluthanthiri, Laksiri Weerasinghe, Theshini Perera, Frank R. Fronczek|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc294ybr
title: CCDC 2119914: Experimental Crystal Structure Determination

description: Related Article: Dinithi Kaluthanthiri, Laksiri Weerasinghe, Theshini Perera, Frank R. Fronczek|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2959g8
title: CCDC 2120259: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, Z. Yuan|2021|CSD Communication|||
DOI: 10.17632/zmzhhgpfjm.1
title: LINF_230026500

description: Nucleoside 2-deoxyribosyltransferase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/p7zpnv9d2d.1
title: LINF_230026200

description: Splicing factor SYF1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/pzggv8wcjv.1
title: LINF_230025500

description: alanine racemase
Leishmania infantum (strain JPCM5)
DOI: 10.5519/qd.2xxr86mc
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.17632/5j86m7387w.1
title: LINF_230025400

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/kc9gg7w6bk.1
title: Numerical Study on the Critical Orientation of The Flooded Passenger Vehicles

description: Data to support the manuscript entitled "3-Dimensional Numerical Study on the Critical Orientation of The Flooded Passenger Vehicles"
DOI: 10.17632/b6ptb6ysn7.1
title: OPENNESS TO PROVIDE ONLINE COUNSELING

description: OPENNESS TO PROVIDE ONLINE COUNSELING
DOI: 10.17632/mg2c99cmzf.1
title: Budget and DALY

description: Data for the title "Is state-wise healthcare budget allocation consistent with the disease burden in India? a quinquennial account (2015–2019)"
DOI: 10.6084/m9.figshare.17128793.v1
title: Evolution of chlorophyll degradation is associated with plant transition to land

description: Fasta files containing proteins and gene sequences used in the phylogenomic study published in "Evolution of chlorophyll degradation is associated with plant transition to land". This contains protein and gene sequences from Fig1B, Fig2, Fig3, Fig4, SFig3, SFig5 that cover potential orthologs of major chlorophyll degradation pathway (NYC1, NOL, HCAR, NYE1, PPH, CLD1, PAO, PTC52, RCCR, TIC55<br>
DOI: 10.6084/m9.figshare.17128793
title: Evolution of chlorophyll degradation is associated with plant transition to land

description: Fasta files containing proteins and gene sequences used in the phylogenomic study published in "Evolution of chlorophyll degradation is associated with plant transition to land". This contains protein and gene sequences from Fig1B, Fig2, Fig3, Fig4, SFig3, SFig5 that cover potential orthologs of major chlorophyll degradation pathway (NYC1, NOL, HCAR, NYE1, PPH, CLD1, PAO, PTC52, RCCR, TIC55<br>
DOI: 10.6084/m9.figshare.17128919
title: Supplementary Material for: Scale for Space and Time Experience in Psychosis: Converging Phenomenological and Psychopathological Perspectives

description: <b><i>Introduction:</i></b> Abnormalities in the experience of space and time are fundamental to understanding schizophrenia spectrum disorders, but the precise relation between such abnormalities and psychopathological symptoms is still unclear. Therefore, the aim of our study was to introduce a novel scale for space and time experience in psychosis (STEP), specifically devised to assess schizophrenia spectrum disorders. <b><i>Methods:</i></b> The STEP scale is a semiquantitative instrument developed on the basis of several items from previous scales and phenomenological reports addressing the experience of space and time. We applied the STEP scale to three groups of subjects (patients with schizophrenia spectrum disorders, patients with predominant affective symptoms, and healthy control subjects), to whom we also applied other more general psychopathological scales, such as the Positive and Negative Syndrome Scale and the Ego-Psychopathology Inventory. <b><i>Results:</i></b> Patients with schizophrenia spectrum disorders scored significantly higher on general psychopatho­-logical scales relative to subjects belonging to the other groups. The STEP scale provided good psychometric properties regarding reliability. We also tested convergent and divergent validity of the STEP scale and found that space and time subscale scores of STEP significantly correlated with each other, as well as with the remaining general psychopathological scores. <b><i>Discussion/Conclusion:</i></b> We introduced the STEP scale as a novel instrument for the assessment of experience of space and time. Its psychometric properties showed high validity and reliability to identify psychopathological symptoms and enabled to differentiate patients with predominantly psychotic symptoms from those with predominantly affective symptoms. The STEP scale provides a standardized measure for assessing disturbances in the experience of space and time. Furthermore, it probably represents a leap forward toward the establishment of an additional dimension of symptoms proposed as “spatiotemporal psychopathology.”
DOI: 10.5281/zenodo.5760973
title: epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS-based reduced representation bisulfite sequencing

description: We present epiGBS2, a laboratory protocol based on epiGBS (Gurp et al., 2016) with a revised and user-friendly bioinformatics pipeline for a wide range of species with or without reference genome. Performance of several critical steps in epiGBS2 was evaluated against baseline data sets from <em>Arabidopsis thaliana</em> and Great tit (<em>Parus major</em>), which confirmed overall good performance of epiGBS2. We provide here the raw bisulfite sequencing data of the epiGBS2 run for <em>Arabidopsis thaliana.</em> A detailed description of the laboratory protocol and an extensive manual of the bioinformatics pipeline are publicly accessible on github (https://github.com/nioo-knaw/epiGBS2) and zenodo (https://doi.org/10.5281/zenodo.4764652). Demultiplexed data were deposited on NCBI under the BioProject ID PRJNA764918
DOI: 10.5281/zenodo.5519369
title: epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS-based reduced representation bisulfite sequencing

description: We present epiGBS2, a laboratory protocol based on epiGBS (Gurp et al., 2016) with a revised and user-friendly bioinformatics pipeline for a wide range of species with or without reference genome. Performance of several critical steps in epiGBS2 was evaluated against baseline data sets from <em>Arabidopsis thaliana</em> and Great tit (<em>Parus major</em>), which confirmed overall good performance of epiGBS2. We provide here the raw bisulfite sequencing data of the epiGBS2 run for <em>Arabidopsis thaliana.</em> A detailed description of the laboratory protocol and an extensive manual of the bioinformatics pipeline are publicly accessible on github (https://github.com/nioo-knaw/epiGBS2) and zenodo (https://doi.org/10.5281/zenodo.4764652). Demultiplexed data were deposited on NCBI under the BioProject ID PRJNA764918
DOI: 10.5281/zenodo.5760092
title: ACR PET phantom raw data and templates for advanced analysis

description: A zipped folder containing raw PET data of the ACR phantom, which was acquired first for 30 minutes without any activity outside the axial field of view (FOV), followed by another 30 minutes of acquisition with activity outside the FOV. Each acquisition comes with the UTE mu-map in DICOM format, included in both raw data folders, &lt;raw&gt; and &lt;raw_ofov&gt;. Since the MR-based mu-maps are not of sufficient accuracy, the synthetic mu-map has been included (and also the generated hardware mu-map). The design for the templates for generating the synthetic mu-map, NAC PET image, and sampling VOIs are included in folder &lt;design&gt;.
DOI: 10.5281/zenodo.5760091
title: ACR PET phantom raw data and templates for advanced analysis

description: A zipped folder containing raw PET data of the ACR phantom, which was acquired first for 30 minutes without any activity outside the axial field of view (FOV), followed by another 30 minutes of acquisition with activity outside the FOV. Each acquisition comes with the UTE mu-map in DICOM format, included in both raw data folders, &lt;raw&gt; and &lt;raw_ofov&gt;. Since the MR-based mu-maps are not of sufficient accuracy, the synthetic mu-map has been included (and also the generated hardware mu-map). The design for the templates for generating the synthetic mu-map, NAC PET image, and sampling VOIs are included in folder &lt;design&gt;.
DOI: 10.5281/zenodo.5602701
title: UAV-based DEM along the Beng Co fault and fresh surface ruptures in Gulu graben, Tibet

description: These data are the Fresh surface rupture in Gulu graben .kmz based on the interpretation of a 0.3m resolution Bingmap and Google Earth image, and the unmanned aerial vehicle (UAV) topography surveying data (.tif) of several offset lake shorelines and fluvial terraces/fans along the Beng Co fault. The UAV data were acquired by ~80 m high aerial photographs using a DJI (Dajiang Innovations Science and Technology Co., Ltd.) Phantom 4 quadrotor copter mounted with a 12.4-megapixel digital camera and measured 12 ground control points (GCPs) using a Trimble R8 RTK-GPS with an accuracy of several centimeters. High-resolution digital elevation models (DEM) were produced by PhotoScan software.
DOI: 10.6084/m9.figshare.17128985
title: Supplementary Material for: Psychobiological Correlates of Aggression in Female Adolescents with Borderline Personality Disorder

description: <b><i>Introduction:</i></b> Aggressive behavior in reaction to threats, frustration, or provocation is prevalent in borderline personality disorder (BPD). This study investigated aggressive behavior and its biological correlates in adolescents with BPD. <b><i>Methods:</i></b> Twenty-one female adolescents with a DSM-IV BPD diagnosis and 25 sex- and age-matched healthy controls participated in the Taylor Aggression Paradigm (TAP), a laboratory-based experiment measuring aggressive behavior in the interpersonal context. Heart rate was measured and saliva samples were taken throughout the experiment. <b><i>Results:</i></b> Multilevel mixed-effects linear regression analyses revealed no significant group difference in aggressive behavior induced by the TAP. Additionally, the two groups did not differ in cortisol, testosterone, and heart rate responses to the aggression induction. The BPD group showed a significant cortisol increase in the time preceding the start of the TAP in contrast to the healthy control group, in whom a significant heart rate increase from baseline to the first block of the TAP was observed. <b><i>Discussion:</i></b> There was no evidence, either at the phenomenological or the biological level, of increased task-induced aggression in adolescents with BPD. The results may indicate that adolescents with BPD experienced fearful stress in anticipation of the experimental task in contrast to healthy controls who showed an adaptive response of the autonomic nervous system necessary to deal with the upcoming demand.
DOI: 10.6084/m9.figshare.17129027
title: Supplementary Material for: Molecular Characterization, Virulence Determinants, and Antimicrobial Resistance Profile of Methicillin-Resistant <b><i>Staphylococcus aureus</i></b> in the North of Iran; a High Prevalence of ST239-SCC<b><i>mec</i></b> III/t037 Clone

description: <b><i>Objectives:</i></b> Emergence and prevalence of methicillin-resistant <i>Staphylococcus aureus</i> (MRSA) have become a major universal health concern, limiting therapeutic options. <b><i>Methods:</i></b> A total number of 37 MRSA isolates, including 19 clinical isolates from hospitalized patients and 18 colonizing isolates from health care workers were identified from 3 hospitals, in Gorgan, North of Iran. Antimicrobial susceptibility test was performed using the disk diffusion method and E-test. The presence of virulence and antibiotic resistance determinants were evaluated by PCR. The genotypical characterization was further analyzed using multi-locus sequence, <i>spa</i>, staphylococcal cassette chromosome, <i>mec</i> (SCC<i>mec)</i>, and <i>agr</i> typing. <b><i>Results:</i></b> The frequency of MRSA among <i>S. aureus</i> isolates was 38.14% (37/97). The most frequent <i>S. aureus</i> resistant isolates were found to be obstinate against penicillin (98%) and gentamicin (82.5%). Additionally, the lowest resistance rates were found against daptomycin (0%), vancomycin (2.7%), and quinupristin-dalfopristin (5.4%). All MRSA isolates were susceptible to daptomycin with minimum inhibitory concentration (MIC)50/MIC90 of 0.25/0.5 μg/mL. One isolate belonging to sequence type 239 (ST239)-SCC<i>mec</i>III/t037 clone (MIC ≥16 μg/mL) was resistant to vancomycin. All but 1 isolate that shares ST22-SCC<i>mec</i> IV/t790 strain were positive for both <i>tsst</i> and <i>pvl</i> genes. The most predominant MRSA isolates (27%) were associated with ST239-SCC<i>mec</i> III/t037, and ST239-SCC<i>mec</i> III/t924 (16.2%) clones, subsequently. In our study, circulating MRSA strains were genetically diverse with a high prevalence of ST239-SCC<i>mec</i> III/t037 clone. <b><i>Conclusion:</i></b> These findings emphasize the need for future and continuous surveillance studies on MRSA to prevent the dissemination of existing multidrug resistance MRSA clones in an effective manner.
DOI: 10.6084/m9.figshare.17128007
title: MDR-TB Patients Raw Data (Hearing Screening for Baseline Therapy).xlsx

description: 36 total patients (72 ears) in this study, The comparison test results using the Mann-Whitney test showed that there were significant differences between automated audiometry and conventional audiometry in both ears. Sensitivity 80-97%, specificity 37-96%, positive predictive value 74-98%, and negative predictive value 59-96%
DOI: 10.6084/m9.figshare.17128007.v2
title: MDR-TB Patients Raw Data (Hearing Screening for Baseline Therapy).xlsx

description: 36 total patients (72 ears) in this study, The comparison test results using the Mann-Whitney test showed that there were significant differences between automated audiometry and conventional audiometry in both ears. Sensitivity 80-97%, specificity 37-96%, positive predictive value 74-98%, and negative predictive value 59-96%