cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4541108
title: Dataset from Ranucci M, Ballotta A, Di Dedda U, Bayshnikova E, Dei Poli M, Resta M, Falco M, Albano G, Menicanti L. The procoagulant pattern of patients with COVID-19 acute respiratory distress syndrome. J Thromb Haemost. 2020 Jul;18(7):1747-1751. doi: 10.1111/jth.14854. Epub 2020 May 6. PMID: 32302448.

description: Dataset from the article Ranucci M, Ballotta A, Di Dedda U, Bayshnikova E, Dei Poli M, Resta M, Falco M, Albano G, Menicanti L. The procoagulant pattern of patients with COVID-19 acute respiratory distress syndrome. J Thromb Haemost. 2020 Jul;18(7):1747-1751. doi: 10.1111/jth.14854. Epub 2020 May 6. PMID: 32302448. <strong>Abstract</strong> <strong>Background: </strong>Few observations exist with respect to the pro-coagulant profile of patients with COVID-19 acute respiratory distress syndrome (ARDS). Reports of thromboembolic complications are scarce but suggestive for a clinical relevance of the problem. <strong>Objectives: </strong>Prospective observational study aimed to characterize the coagulation profile of COVID-19 ARDS patients with standard and viscoelastic coagulation tests and to evaluate their changes after establishment of an aggressive thromboprophylaxis. <strong>Methods: </strong>Sixteen patients with COVID-19 ARDS received a complete coagulation profile at the admission in the intensive care unit. Ten patients were followed in the subsequent 7 days, after increasing the dose of low molecular weight heparin, antithrombin levels correction, and clopidogrel in selected cases. <strong>Results: </strong>At baseline, the patients showed a pro-coagulant profile characterized by an increased clot strength (CS, median 55 hPa, 95% interquartile range 35-63), platelet contribution to CS (PCS, 43 hPa; interquartile range 24-45), fibrinogen contribution to CS (FCS, 12 hPa; interquartile range 6-13.5) elevated D-dimer levels (5.5 μg/mL, interquartile range 2.5-6.5), and hyperfibrinogenemia (794 mg/dL, interquartile range 583-933). Fibrinogen levels were associated (R<sup>2</sup> = .506, P = .003) with interleukin-6 values. After increasing the thromboprophylaxis, there was a significant (P = .001) time-related decrease of fibrinogen levels, D-dimers (P = .017), CS (P = .013), PCS (P = .035), and FCS (P = .038). <strong>Conclusion: </strong>The pro-coagulant pattern of these patients may justify the clinical reports of thromboembolic complications (pulmonary embolism) during the course of the disease. Further studies are needed to assess the best prophylaxis and treatment of this condition.
DOI: 10.5281/zenodo.4541098
title: Dataset Used by DeepIaC: deep learning-based linguistic anti-pattern detection in IaC

description: This is the dataset used by our paper "DeepIaC: deep learning-based linguistic anti-pattern detection in IaC". It includes the Ansible task descriptions systematically collected from GitHub repositories. More information can be found in our paper https://dl.acm.org/doi/abs/10.1145/3416505.3423564
DOI: 10.5281/zenodo.4541097
title: Dataset Used by DeepIaC: deep learning-based linguistic anti-pattern detection in IaC

description: This is the dataset used by our paper "DeepIaC: deep learning-based linguistic anti-pattern detection in IaC". It includes the Ansible task descriptions systematically collected from GitHub repositories. More information can be found in our paper https://dl.acm.org/doi/abs/10.1145/3416505.3423564
DOI: 10.21942/uva.13948409.v1
title: Pushed to perform: Time pressure in long run Learning-to-Forecast experiments

description: This data set contains the raw data of 13 treatments run between April 29 and May 23, 2019. The experiments were conducted at the CREED lab in Amsterdam.<br><br>rawdata_1908_01: high-lowrawdata_1908_02: low-highrawdata_1908_03: high-lowrawdata_1908_04: high-lowrawdata_1908_05: low-highrawdata_1908_06: low-highrawdata_1908_07: high-lowrawdata_1908_08: high-lowrawdata_1908_09: low-highrawdata_1908_10: high-lowrawdata_1908_11: high-lowrawdata_1908_12: high-lowrawdata_1908_13: high-low
DOI: 10.21942/uva.13948409
title: Pushed to perform: Time pressure in long run Learning-to-Forecast experiments

description: This data set contains the raw data of 13 treatments run between April 29 and May 23, 2019. The experiments were conducted at the CREED lab in Amsterdam.<br><br>rawdata_1908_01: high-lowrawdata_1908_02: low-highrawdata_1908_03: high-lowrawdata_1908_04: high-lowrawdata_1908_05: low-highrawdata_1908_06: low-highrawdata_1908_07: high-lowrawdata_1908_08: high-lowrawdata_1908_09: low-highrawdata_1908_10: high-lowrawdata_1908_11: high-lowrawdata_1908_12: high-lowrawdata_1908_13: high-low
DOI: 10.5519/qd.gjge55ek
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (674345 records)
DOI: 10.6084/m9.figshare.14034902.v1
title: Supplementary material EMG and balance data

description: EMG and Balance data
DOI: 10.5281/zenodo.4541144
title: Dataset from Porta A, Valencia JF, Cairo B, Bari V, De Maria B, Gelpi F, Barbic F, Furlan R. Are Strategies Favoring Pattern Matching a Viable Way to Improve Complexity Estimation Based on Sample Entropy? Entropy (Basel). 2020 Jun 30;22(7):724. doi: 10.3390/e22070724. PMID: 33286495; PMCID: PMC7517267.

description: Dataset from the article Porta A, Valencia JF, Cairo B, Bari V, De Maria B, Gelpi F, Barbic F, Furlan R. Are Strategies Favoring Pattern Matching a Viable Way to Improve Complexity Estimation Based on Sample Entropy? Entropy (Basel). 2020 Jun 30;22(7):724. doi: 10.3390/e22070724. PMID: 33286495; PMCID: PMC7517267. <strong>Abstract</strong> It has been suggested that a viable strategy to improve complexity estimation based on the assessment of pattern similarity is to increase the pattern matching rate without enlarging the series length. We tested this hypothesis over short simulations of nonlinear deterministic and linear stochastic dynamics affected by various noise amounts. Several transformations featuring a different ability to increase the pattern matching rate were tested and compared to the usual strategy adopted in sample entropy (SampEn) computation. The approaches were applied to evaluate the complexity of short-term cardiac and vascular controls from the beat-to-beat variability of heart period (HP) and systolic arterial pressure (SAP) in 12 Parkinson disease patients and 12 age- and gender-matched healthy subjects at supine resting and during head-up tilt. Over simulations, the strategies estimated a larger complexity over nonlinear deterministic signals and a greater regularity over linear stochastic series or deterministic dynamics importantly contaminated by noise. Over short HP and SAP series the techniques did not produce any practical advantage, with an unvaried ability to discriminate groups and experimental conditions compared to the traditional SampEn. Procedures designed to artificially increase the number of matches are of no methodological and practical value when applied to assess complexity indexes.
DOI: 10.5281/zenodo.4541143
title: Dataset from Porta A, Valencia JF, Cairo B, Bari V, De Maria B, Gelpi F, Barbic F, Furlan R. Are Strategies Favoring Pattern Matching a Viable Way to Improve Complexity Estimation Based on Sample Entropy? Entropy (Basel). 2020 Jun 30;22(7):724. doi: 10.3390/e22070724. PMID: 33286495; PMCID: PMC7517267.

description: Dataset from the article Porta A, Valencia JF, Cairo B, Bari V, De Maria B, Gelpi F, Barbic F, Furlan R. Are Strategies Favoring Pattern Matching a Viable Way to Improve Complexity Estimation Based on Sample Entropy? Entropy (Basel). 2020 Jun 30;22(7):724. doi: 10.3390/e22070724. PMID: 33286495; PMCID: PMC7517267. <strong>Abstract</strong> It has been suggested that a viable strategy to improve complexity estimation based on the assessment of pattern similarity is to increase the pattern matching rate without enlarging the series length. We tested this hypothesis over short simulations of nonlinear deterministic and linear stochastic dynamics affected by various noise amounts. Several transformations featuring a different ability to increase the pattern matching rate were tested and compared to the usual strategy adopted in sample entropy (SampEn) computation. The approaches were applied to evaluate the complexity of short-term cardiac and vascular controls from the beat-to-beat variability of heart period (HP) and systolic arterial pressure (SAP) in 12 Parkinson disease patients and 12 age- and gender-matched healthy subjects at supine resting and during head-up tilt. Over simulations, the strategies estimated a larger complexity over nonlinear deterministic signals and a greater regularity over linear stochastic series or deterministic dynamics importantly contaminated by noise. Over short HP and SAP series the techniques did not produce any practical advantage, with an unvaried ability to discriminate groups and experimental conditions compared to the traditional SampEn. Procedures designed to artificially increase the number of matches are of no methodological and practical value when applied to assess complexity indexes.
DOI: 10.6084/m9.figshare.13724635
title: Extended data for the manuscript: Health economic analyses of latent tuberculosis infection screening and preventive treatment among people living with HIV in lower tuberculosis incidence settings: a systematic review

description: <b>Summary</b><br>This dataset provides extended data supporting the claims of the related manuscript: “Health economic analyses of latent tuberculosis infection screening and preventive treatment among people living with HIV in lower tuberculosis incidence settings: a systematic review”.In a systematic review, the related study assessed cost-effectiveness estimates of latent tuberculosis (TB) infection (LTBI) screening/preventive treatment (PT) strategies among people living with HIV (PLWH) in lower TB incidence countries to identify model-driving inputs and methodological differences. Type of data: search strategy for systematic review; PRISMA 2009 checklist Subject of data: scientific literature (peer-reviewed full papers or research letters in peer-reviewed journals) reporting the cost-effectiveness, cost-utility or cost-benefit of screening for LTBI among PLWH in lower TB incidence countries (defined as &lt;100 cases per 100,000 population/year, WHO 2018 estimates).Date of data range: 1980-2020<br> <b>Data </b>The data comprise 2 items contained in a single Word .docx document. The 2 items are:1. The search strategy for the systematic review which forms the basis of the related study. This includes the search terms used for searches of PubMed, Embase and Web of Science.2. The completed PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) 2009 checklist. For additional information on PRISMA, see this introductory article (https://doi.org/10.1136/bmj.b2700) or the PRISMA website (http://www.prisma-statement.org/) <b>Corresponding author(s) for this study</b>Dr Rebecca Baggaley, Department of Respiratory Sciences, Maurice Shock Medical Sciences Building, University Road, University of Leicester, Leicester, LE1 9HN rebecca.baggaley@leicester.ac.uk +44 (0)116 252 2951 Dr Manish Pareek, Department of Respiratory Sciences, Maurice Shock Medical Sciences Building, University Road, University of Leicester, Leicester, LE1 9HN manish.pareek@leicester.ac.uk +44 (0)116 258 6952<br> <b>Ethics </b>This study was registered on the International Prospective Register of Systematic Reviews (PROSPERO) registration number CRD42020166338 (18/03/2020). It was conducted in accordance with PRISMA guidelines (see Reporting guidelines).
DOI: 10.6084/m9.figshare.13724635.v1
title: Extended data for the manuscript: Health economic analyses of latent tuberculosis infection screening and preventive treatment among people living with HIV in lower tuberculosis incidence settings: a systematic review

description: <b>Summary</b><br>This dataset provides extended data supporting the claims of the related manuscript: “Health economic analyses of latent tuberculosis infection screening and preventive treatment among people living with HIV in lower tuberculosis incidence settings: a systematic review”.In a systematic review, the related study assessed cost-effectiveness estimates of latent tuberculosis (TB) infection (LTBI) screening/preventive treatment (PT) strategies among people living with HIV (PLWH) in lower TB incidence countries to identify model-driving inputs and methodological differences. Type of data: search strategy for systematic review; PRISMA 2009 checklist Subject of data: scientific literature (peer-reviewed full papers or research letters in peer-reviewed journals) reporting the cost-effectiveness, cost-utility or cost-benefit of screening for LTBI among PLWH in lower TB incidence countries (defined as &lt;100 cases per 100,000 population/year, WHO 2018 estimates).Date of data range: 1980-2020<br> <b>Data </b>The data comprise 2 items contained in a single Word .docx document. The 2 items are:1. The search strategy for the systematic review which forms the basis of the related study. This includes the search terms used for searches of PubMed, Embase and Web of Science.2. The completed PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) 2009 checklist. For additional information on PRISMA, see this introductory article (https://doi.org/10.1136/bmj.b2700) or the PRISMA website (http://www.prisma-statement.org/) <b>Corresponding author(s) for this study</b>Dr Rebecca Baggaley, Department of Respiratory Sciences, Maurice Shock Medical Sciences Building, University Road, University of Leicester, Leicester, LE1 9HN rebecca.baggaley@leicester.ac.uk +44 (0)116 252 2951 Dr Manish Pareek, Department of Respiratory Sciences, Maurice Shock Medical Sciences Building, University Road, University of Leicester, Leicester, LE1 9HN manish.pareek@leicester.ac.uk +44 (0)116 258 6952<br> <b>Ethics </b>This study was registered on the International Prospective Register of Systematic Reviews (PROSPERO) registration number CRD42020166338 (18/03/2020). It was conducted in accordance with PRISMA guidelines (see Reporting guidelines).
DOI: 10.34740/kaggle/dsv/1936665
title: Google Trends Dataset
DOI: 10.5281/zenodo.3369875
title: Survey of digitized newspaper interfaces (dataset and notebooks)

description: This record contains the datasets and jupyter notebooks which support the analysis presented in the paper "Historical Newspaper User Interfaces: A Review". Please refer to the paper or the github repository for more information (see links below), or do not hesitate to contact us!
DOI: 10.5281/zenodo.3369874
title: Survey of digitized newspaper interfaces (dataset and notebooks)

description: This record contains the datasets and jupyter notebooks which support the analysis presented in the paper "Historical Newspaper User Interfaces: A Review". Please refer to the paper or the github repository for more information (see links below), or do not hesitate to contact us!
DOI: 10.6084/m9.figshare.14034947
title: Supplementary Material for: Real-Time Confocal Imaging for Hidradenitis Suppurativa: Description of Morphological Aspects and Focus on the Role of Follicular Ostia

description: <b><i>Background:</i></b> Hidradenitis suppurativa (HS) is a chronic, recurrent, inflammatory skin disease involving the follicular unit. Growing evidence suggests a crucial role of hyperkeratosis, infundibular plugging and perifolliculitis in its pathogenesis. <b><i>Objectives:</i></b> To characterize the microscopic morphology of open comedos using in vivo reflectance confocal microscopy (RCM) and define alterations occurring in HS normal-appearing perilesional skin compared to healthy skin of a control group, discussing therefore microscopic differences. <b><i>Materials and Methods:</i></b> Twenty patients (11 males, 9 females; aged 19–51 years) affected by HS were recruited. RCM was performed on open comedos of axillary/inguinal regions and on normal-appearing skin areas distant at least 1.5 cm from HS lesions. Ten healthy individuals (6 males, 4 females) were included as control group. <b><i>Results:</i></b> RCM aspects of 78 open comedos were explored, observing circular/ovoidal structures disclosing a hyperrefractive amorphous material (72/78, 92.3%) within the infundibular cavity surrounded with a bright (51/78, 65.4%) and regular (52/78, 66.2%) border. Follicular ostia of HS perilesional skin (<i>n</i> = 541) compared to follicular ostia of a control group (<i>n</i> = 321) were characterized by a larger infundibular diameter (183.4 vs. 85.8 µm) and diverged in terms of material collected inside infundibula (44.5 vs. 21%) and keratinization of the border (47.6 vs. 25.5%). <b><i>Conclusion:</i></b> In vivo characterization of open comedos and the recognition of microscopic subclinical alterations of HS normal-appearing skin, compared to healthy skin, could add further insights into the definition of biological events leading to HS manifestations, including the dysregulated process of keratinization.
DOI: 10.6084/m9.figshare.14034947.v1
title: Supplementary Material for: Real-Time Confocal Imaging for Hidradenitis Suppurativa: Description of Morphological Aspects and Focus on the Role of Follicular Ostia

description: <b><i>Background:</i></b> Hidradenitis suppurativa (HS) is a chronic, recurrent, inflammatory skin disease involving the follicular unit. Growing evidence suggests a crucial role of hyperkeratosis, infundibular plugging and perifolliculitis in its pathogenesis. <b><i>Objectives:</i></b> To characterize the microscopic morphology of open comedos using in vivo reflectance confocal microscopy (RCM) and define alterations occurring in HS normal-appearing perilesional skin compared to healthy skin of a control group, discussing therefore microscopic differences. <b><i>Materials and Methods:</i></b> Twenty patients (11 males, 9 females; aged 19–51 years) affected by HS were recruited. RCM was performed on open comedos of axillary/inguinal regions and on normal-appearing skin areas distant at least 1.5 cm from HS lesions. Ten healthy individuals (6 males, 4 females) were included as control group. <b><i>Results:</i></b> RCM aspects of 78 open comedos were explored, observing circular/ovoidal structures disclosing a hyperrefractive amorphous material (72/78, 92.3%) within the infundibular cavity surrounded with a bright (51/78, 65.4%) and regular (52/78, 66.2%) border. Follicular ostia of HS perilesional skin (<i>n</i> = 541) compared to follicular ostia of a control group (<i>n</i> = 321) were characterized by a larger infundibular diameter (183.4 vs. 85.8 µm) and diverged in terms of material collected inside infundibula (44.5 vs. 21%) and keratinization of the border (47.6 vs. 25.5%). <b><i>Conclusion:</i></b> In vivo characterization of open comedos and the recognition of microscopic subclinical alterations of HS normal-appearing skin, compared to healthy skin, could add further insights into the definition of biological events leading to HS manifestations, including the dysregulated process of keratinization.
DOI: 10.6084/m9.figshare.14034923
title: Supplementary Material for: A Systematic Review on the Impact of Genetic Testing for Familial Melanoma I: Primary and Secondary Preventative Behaviours

description: <b><i>Background:</i></b> Increasing availability of panel testing for known high-penetrance familial melanoma genes has made it possible to improve risk awareness in those at greatest risk. Prior to wider implementation, the role of genetic testing in preventing melanoma, through influencing primary and secondary preventative behaviours, requires clarification. <b><i>Methods:</i></b> Database searches of PubMed, Embase, CINAHL, PsycINFO and the Cochrane Library were conducted for studies describing preventative behaviour outcomes in response to genetic testing for melanoma risk. Publications describing original research of any study type were screened for eligibility. <b><i>Results:</i></b> Eighteen publications describing 11 unique studies were reviewed. Outcomes assessed are based on health behaviour recommendations for those at increased risk: adherence to sun-protective behaviour (SPB); clinical skin examinations (CSE); skin self-examinations (SSE); and family discussion of risk. Overall, modest increases in adherence to primary prevention strategies of SPB were observed following genetic testing. Importantly, there were no net decreases in SPB found amongst non-carriers. For secondary preventative behaviour outcomes, including CSE and SSE, increases in post-test intentions and long-term adherence were reported across several subgroups in approximately half of the studies. While this increase reached significance in mutation carriers in some studies, one study reported a significant decline in annual CSE adherence of non-mutation carriers. <b><i>Conclusions:</i></b> Evidence reviewed suggests that genetic testing has a modestly positive impact on preventative behaviour in high-risk individuals. Furthermore, improvements are observed regardless of mutation carrier status, although greater adherence is found in carriers. While additional studies of more diverse cohorts would be needed to inform clinical recommendations, the findings are encouraging and suggest that genetic testing for melanoma has a positive impact on preventative behaviours.
DOI: 10.20351/29he20081004
title: P3A2 Cruise, RV Hespérides

description: P3A2 Cruise (29HE20081004) carried out on the Research Vessel Hespérides in 2008
DOI: 10.15128/r12z10wq23s
title: The influence of three-dimensional topography on turbulent flow structures over dunes [dataset]

description: This is the data associated with 'The influence of three-dimensional topography on turbulent flow structures over dunes' under review in Journal of Geophysical Research – Earth Surface
description: Dunes are the most prevalent bedforms in sand-bedded rivers and their morphology typically comprises of multiple scales of three-dimensional topography. However, our understanding of flow over dunes is predicated largely on two-dimensional models, a condition which is rare in nature. Here, we present results of Large Eddy Simulations over a static, three-dimensional dune field, using a two- and three- dimensional topographic realisation, to investigate the interaction between bed topography and turbulent flow structures. We show that flow over two-dimensional bedforms increases the velocity over the stoss slope that reduces the size of the leeside separation zone. Flow over three-dimensional bedforms generates approximately 70% less form drag and is 150% more turbulent, with twice as many vortices that are longer, wider and taller. Turbulence is dominated by hairpin shaped vortices and Kelvin-Helmholtz instabilities that interact with the bed in the brink point region of the dune crest and down the lee slope, and generate high shear stresses for long durations. These finding highlight how the size, morphology and stacking of coherent flow structures into larger flow superstructures may be critical in sediment entrainment, and dictate the relationship between event duration and magnitude that drive sediment impulses at the bed and will ultimately lead to an increased three-dimensionality in bedform morphology.
description: A Large Eddy Simulation model was developed and applied to study turbulent flow over a three dimensional dune field
DOI: 10.20351/29he20080516
title: MVSEIS Cruise, RV Hespérides

description: MVSEIS Cruise (29HE20080516) carried out on the Research Vessel Hespérides in 2008