cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26988247.v1
title: Additional file 5 of Pest status, molecular evolution, and epigenetic factors derived from the genome assembly of Frankliniella fusca, a thysanopteran phytovirus vector

description: Additional file 5.
DOI: 10.6084/m9.figshare.26988250
title: Additional file 6 of Pest status, molecular evolution, and epigenetic factors derived from the genome assembly of Frankliniella fusca, a thysanopteran phytovirus vector

description: Additional file 6.
DOI: 10.6084/m9.figshare.26988250.v1
title: Additional file 6 of Pest status, molecular evolution, and epigenetic factors derived from the genome assembly of Frankliniella fusca, a thysanopteran phytovirus vector

description: Additional file 6.
DOI: 10.15468/dl.2b7f9t
title: Occurrence Download

description: A dataset containing 552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Ficus ottoniifolia (Miq.) Miq.",
 "Continent is Africa"
 ]
}

 The dataset includes 552 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011660-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26988241
title: Additional file 3 of Pest status, molecular evolution, and epigenetic factors derived from the genome assembly of Frankliniella fusca, a thysanopteran phytovirus vector

description: Additional file 3.
DOI: 10.6084/m9.figshare.26988253
title: Additional file 7 of Pest status, molecular evolution, and epigenetic factors derived from the genome assembly of Frankliniella fusca, a thysanopteran phytovirus vector

description: Additional file 7.
DOI: 10.6084/m9.figshare.26988256
title: Additional file 8 of Pest status, molecular evolution, and epigenetic factors derived from the genome assembly of Frankliniella fusca, a thysanopteran phytovirus vector

description: Additional file 8.
DOI: 10.6084/m9.figshare.26988256.v1
title: Additional file 8 of Pest status, molecular evolution, and epigenetic factors derived from the genome assembly of Frankliniella fusca, a thysanopteran phytovirus vector

description: Additional file 8.
DOI: 10.6084/m9.figshare.26988244.v1
title: Additional file 4 of Pest status, molecular evolution, and epigenetic factors derived from the genome assembly of Frankliniella fusca, a thysanopteran phytovirus vector

description: Additional file 4.
DOI: 10.6084/m9.figshare.26988238.v1
title: Additional file 2 of Pest status, molecular evolution, and epigenetic factors derived from the genome assembly of Frankliniella fusca, a thysanopteran phytovirus vector

description: Additional file 2.
DOI: 10.6084/m9.figshare.26988274
title: Additional file 2 of A genome-wide search for pleiotropy in more than 100,000 harmonized longitudinal cognitive domain scores

description: Additional file 2: Supplementary Table 1. Correlations among cognitive domain scores by cohort. Supplementary Table 2. Genetic correlations of cognitive domain scores with general cognitive function and neuropsychiatric disorders. Supplementary Table 3. Genome-wide significant and suggestive associations for cognitive domain scores in the total sample, clinic-based cohorts, and community-based cohorts. Supplementary Table 4. Genome-wide significant and suggestive pleiotropy for each pair of cognitive domains in the total sample, clinic-based cohorts, and community-based cohorts. Supplementary Table 5. Canonical pathways significantly enriched for top-ranked GWAS genes with corrected FDR &lt; 0.05. Supplementary Table 6. Number of seed genes from individual GWAS and pleiotropy analyses.
DOI: 10.6084/m9.figshare.26988283.v1
title: Additional file 2 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 2: Supplemental table 1. Sequenced libraries information.
DOI: 10.6084/m9.figshare.26988286
title: Additional file 3 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 3: Supplemental Table 2. A. Amaranthus palmeri enriched GO terms present in DE genes for mature flower comparison within genders. B. Amaranthus palmeri between sexes mature flower comparison genes within significant Goterms. C. Genes identified uniquely in Amaranthus palmeri SAM vs floral meristem female comparison containing key enriched GO terms. D. Genes identified uniquely in Amaranthus palmeri SAM vs floral meristem male comparison containing key enriched GO terms. E. Amaranthus palmeri SAM and mature flower comparison female biased enriched GO Terms and genes in across tissue comparison. F. Amaranthus palmeri SAM and mature flower comparison female bias enriched genes. G. Amaranthus palmeri SAM and mature flower comparison male biased enriched GO Terms and genes in across tissue comparison. F. Amaranthus palmeri SAM and mature flower comparison male biased enriched genes.
DOI: 10.6084/m9.figshare.26988274.v1
title: Additional file 2 of A genome-wide search for pleiotropy in more than 100,000 harmonized longitudinal cognitive domain scores

description: Additional file 2: Supplementary Table 1. Correlations among cognitive domain scores by cohort. Supplementary Table 2. Genetic correlations of cognitive domain scores with general cognitive function and neuropsychiatric disorders. Supplementary Table 3. Genome-wide significant and suggestive associations for cognitive domain scores in the total sample, clinic-based cohorts, and community-based cohorts. Supplementary Table 4. Genome-wide significant and suggestive pleiotropy for each pair of cognitive domains in the total sample, clinic-based cohorts, and community-based cohorts. Supplementary Table 5. Canonical pathways significantly enriched for top-ranked GWAS genes with corrected FDR &lt; 0.05. Supplementary Table 6. Number of seed genes from individual GWAS and pleiotropy analyses.
DOI: 10.6084/m9.figshare.26988289
title: Additional file 4 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 4: Supplemental table 3. A. Amaranthus palmeri WGCNA results: Tan module genes and their differentially expression significance. B. Amaranthus palmeri WGCNA results: Salmon module genes and their differentially expression significance. C. Amaranthus palmeri WGCNA results: Cyan module genes and their differentially expression significance. D. Amaranthus palmeri WGCNA results: Midnightblue module genes and their differentially expression significance. E. Amaranthus palmeri WGCNA results: Blue module genes and their differentially expression significance. F. Amaranthus palmeri WGCNA results: Turquoise module genes and their differentially expression significance. G. Amaranthus palmeri WGCNA results: Red module genes and their differentially expression significance.
DOI: 10.6084/m9.figshare.26988298.v1
title: Additional file 7 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 7: Supplemental table 6. A. GO enrichment analysis with Blue module in WGCNA analysis for Amaranthus tuberculatus. B. Module membership - Gene trait corralation hub genes for the blue module in WGCNA for Amaranthus tuberculatus. C. GO enrichment analysis with Yellow module in WGCNA for Amaranthus tuberculatus. D. Module membership-Gene trait corralation hub genes for the yellow module in WGCNA for Amaranthus tuberculatus. E. GO enrichment analysis with turquoise module in WGCNA for Amaranthus tuberculatus. F. Module membership-Gene trait corralation hub genes for the turquoise module in WGCNA for Amaranthus tuberculatus. G. GO enrichment analysis with brown module in WGCNA for Amaranthus tuberculatus. H. Module membership-Gene trait corralation hub genes for the brown module in WGCNA for Amaranthus tuberculatus. I. GO enrichment analysis with red module in WGCNA for Amaranthus tuberculatus. J. Module membership-Gene trait corralation hub genes for the red module in WGCNA for Amaranthus tuberculatus. K. GO enrichment analysis with green module in WGCNA for Amaranthus tuberculatus. L. Module membership-Gene trait corralation hub genes for the green module in WGCNA for Amaranthus tuberculatus.
DOI: 10.6084/m9.figshare.26988292
title: Additional file 5 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 5: Supplemental table 4. A. Regulation prediction analysis results with differentially expressed genes from SAM comparison in Amaranthus palmeri. B. Regulation prediction analysis results with differentially expressed genes from Floral meristem comparison in Amaranthus palmeri. C. Regulation prediction analysis results with differentially expressed genes from mature flower comparison in Amaranthus palmeri. D. Regulation prediction analysis results with differentially expressed genes from Floral meristem comparison in Amaranthus tuberculatus. E. Regulation prediction analysis results with differentially expressed genes from mature flower comparison in Amaranthus tuberculatus. F. Transcription factor binding site prediction results using identified key genes for sex determination in Amaranthus palmeri. F. Transcription factor binding site prediction results using identified key genes for sex determination in Amaranthus tuberculatus.
DOI: 10.6084/m9.figshare.26988301.v1
title: Additional file 8 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 8: Supplemental Table 7. A. Primers sequences used for RNA-seq validation via qPCR.
DOI: 10.6084/m9.figshare.26988253.v1
title: Additional file 7 of Pest status, molecular evolution, and epigenetic factors derived from the genome assembly of Frankliniella fusca, a thysanopteran phytovirus vector

description: Additional file 7.
DOI: 10.6084/m9.figshare.26988292.v1
title: Additional file 5 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 5: Supplemental table 4. A. Regulation prediction analysis results with differentially expressed genes from SAM comparison in Amaranthus palmeri. B. Regulation prediction analysis results with differentially expressed genes from Floral meristem comparison in Amaranthus palmeri. C. Regulation prediction analysis results with differentially expressed genes from mature flower comparison in Amaranthus palmeri. D. Regulation prediction analysis results with differentially expressed genes from Floral meristem comparison in Amaranthus tuberculatus. E. Regulation prediction analysis results with differentially expressed genes from mature flower comparison in Amaranthus tuberculatus. F. Transcription factor binding site prediction results using identified key genes for sex determination in Amaranthus palmeri. F. Transcription factor binding site prediction results using identified key genes for sex determination in Amaranthus tuberculatus.
DOI: 10.6084/m9.figshare.26988295
title: Additional file 6 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 6: Supplemental table 5. A. Enrichment GO term analysis for genes differentially expressed in mature flower comparison across sexes in Amanrathus tuberculatus. B. Genes containing enriched GO term for genes differentially expressed in mature flower comparison across sexes in Amanrathus tuberculatus. C. Differentially expressed genes in A. tuberculatus floral meristem tissue comparison across genders. D. SAM vs Floral meristem tissue enrichment analysis results within female A. tuberculatus. E. A. tuberculatus female SAM vs Floral meristem tissue comparison enriched genes. F. SAM vs Floral meristem tissue enrichment analysis results within male A. tuberculatus. G. A. tuberculatus male SAM vs Floral meristem tissue comparison enriched genes. H. SAM vs Mature flower tissue enrichment analysis results within female A. tuberculatus. I. Female A. tuberculatus SAM vs Mature flower tissue enriched genes. J. SAM vs Mature flower tissue enrichment analysis results within male A. tuberculatus. I. Male A. tuberculatus SAM vs Mature flower tissue enriched genes.
DOI: 10.6084/m9.figshare.26988295.v1
title: Additional file 6 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 6: Supplemental table 5. A. Enrichment GO term analysis for genes differentially expressed in mature flower comparison across sexes in Amanrathus tuberculatus. B. Genes containing enriched GO term for genes differentially expressed in mature flower comparison across sexes in Amanrathus tuberculatus. C. Differentially expressed genes in A. tuberculatus floral meristem tissue comparison across genders. D. SAM vs Floral meristem tissue enrichment analysis results within female A. tuberculatus. E. A. tuberculatus female SAM vs Floral meristem tissue comparison enriched genes. F. SAM vs Floral meristem tissue enrichment analysis results within male A. tuberculatus. G. A. tuberculatus male SAM vs Floral meristem tissue comparison enriched genes. H. SAM vs Mature flower tissue enrichment analysis results within female A. tuberculatus. I. Female A. tuberculatus SAM vs Mature flower tissue enriched genes. J. SAM vs Mature flower tissue enrichment analysis results within male A. tuberculatus. I. Male A. tuberculatus SAM vs Mature flower tissue enriched genes.
DOI: 10.6084/m9.figshare.26988298
title: Additional file 7 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 7: Supplemental table 6. A. GO enrichment analysis with Blue module in WGCNA analysis for Amaranthus tuberculatus. B. Module membership - Gene trait corralation hub genes for the blue module in WGCNA for Amaranthus tuberculatus. C. GO enrichment analysis with Yellow module in WGCNA for Amaranthus tuberculatus. D. Module membership-Gene trait corralation hub genes for the yellow module in WGCNA for Amaranthus tuberculatus. E. GO enrichment analysis with turquoise module in WGCNA for Amaranthus tuberculatus. F. Module membership-Gene trait corralation hub genes for the turquoise module in WGCNA for Amaranthus tuberculatus. G. GO enrichment analysis with brown module in WGCNA for Amaranthus tuberculatus. H. Module membership-Gene trait corralation hub genes for the brown module in WGCNA for Amaranthus tuberculatus. I. GO enrichment analysis with red module in WGCNA for Amaranthus tuberculatus. J. Module membership-Gene trait corralation hub genes for the red module in WGCNA for Amaranthus tuberculatus. K. GO enrichment analysis with green module in WGCNA for Amaranthus tuberculatus. L. Module membership-Gene trait corralation hub genes for the green module in WGCNA for Amaranthus tuberculatus.
DOI: 10.6084/m9.figshare.26988301
title: Additional file 8 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 8: Supplemental Table 7. A. Primers sequences used for RNA-seq validation via qPCR.
DOI: 10.6084/m9.figshare.26988283
title: Additional file 2 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 2: Supplemental table 1. Sequenced libraries information.
DOI: 10.6084/m9.figshare.26988286.v1
title: Additional file 3 of Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

description: Additional file 3: Supplemental Table 2. A. Amaranthus palmeri enriched GO terms present in DE genes for mature flower comparison within genders. B. Amaranthus palmeri between sexes mature flower comparison genes within significant Goterms. C. Genes identified uniquely in Amaranthus palmeri SAM vs floral meristem female comparison containing key enriched GO terms. D. Genes identified uniquely in Amaranthus palmeri SAM vs floral meristem male comparison containing key enriched GO terms. E. Amaranthus palmeri SAM and mature flower comparison female biased enriched GO Terms and genes in across tissue comparison. F. Amaranthus palmeri SAM and mature flower comparison female bias enriched genes. G. Amaranthus palmeri SAM and mature flower comparison male biased enriched GO Terms and genes in across tissue comparison. F. Amaranthus palmeri SAM and mature flower comparison male biased enriched genes.
DOI: 10.6084/m9.figshare.26988307
title: Additional file 2 of Associations between DNA methylation and gene regulation depend on chromatin accessibility during transgenerational plasticity

description: Additional file 2. File containing genewise parameter estimates for maternal and developmental effects on differential expression and differential exon use.
DOI: 10.6084/m9.figshare.26988310
title: Additional file 3 of Associations between DNA methylation and gene regulation depend on chromatin accessibility during transgenerational plasticity

description: Additional file 3. File containing the results of Mann Whitney U and Fisher's exact tests for gene ontological enrichment among gene sets.
DOI: 10.6084/m9.figshare.26988310.v1
title: Additional file 3 of Associations between DNA methylation and gene regulation depend on chromatin accessibility during transgenerational plasticity

description: Additional file 3. File containing the results of Mann Whitney U and Fisher's exact tests for gene ontological enrichment among gene sets.
DOI: 10.6084/m9.figshare.26988307.v1
title: Additional file 2 of Associations between DNA methylation and gene regulation depend on chromatin accessibility during transgenerational plasticity

description: Additional file 2. File containing genewise parameter estimates for maternal and developmental effects on differential expression and differential exon use.
DOI: 10.6084/m9.figshare.26988313
title: Additional file 4 of Associations between DNA methylation and gene regulation depend on chromatin accessibility during transgenerational plasticity

description: Additional file 4. File containing library quality and alignment metrics for RNA-seq and RRBS replicates.
DOI: 10.6084/m9.figshare.26988313.v1
title: Additional file 4 of Associations between DNA methylation and gene regulation depend on chromatin accessibility during transgenerational plasticity

description: Additional file 4. File containing library quality and alignment metrics for RNA-seq and RRBS replicates.
DOI: 10.15468/dl.eta297
title: Occurrence Download

description: A dataset containing 552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Ficus ottoniifolia (Miq.) Miq.",
 "Continent is Africa"
 ]
}

 The dataset includes 552 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011661-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3c76sh
title: Occurrence Download

description: A dataset containing 1743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Opuntia aurantiaca Gillies ex Lindl.",
 "Year 2000-2023"
 ]
}

 The dataset includes 1743 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066718-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4n3fa
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rasbora ennealepis Roberts, 1989"
 ]
}

 The dataset includes 38 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0335780-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jp2u7
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus nidularius Barneby"
 ]
}

 The dataset includes 77 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077657-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bypesh
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thorlaksonius subcarinatus Bousfield & Hendrycks, 1994"
 ]
}

 The dataset includes 55 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133664-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ad24s6
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus raddei Basil."
 ]
}

 The dataset includes 21 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077705-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nphvgt
title: Occurrence Download

description: A dataset containing 186666 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platanthera bifolia (L.) Rich."
 ]
}

 The dataset includes 186666 records from 834 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011978-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6cafb
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "TaxonKey is Nymphargus mariae (Duellman & Toft, 1979)"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085393-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvmfau
title: Occurrence Download

description: A dataset containing 60124 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Fagopyrum esculentum Moench)"
 ]
}

 The dataset includes 60124 records from 676 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043070-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.