cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/fvnbh855cr.1
title: Quantifying Lake- Aquifer Water Exchange (Case Study: Lake Urmia, Iran)

description: The supplementary data file including time-series of in-situ (ground) and remotely-sensed monthly data of Lake Urmia located in northwest of Iran. In-situ datasets including precipitation over lake, surface inflow into lake, and groundwater level in 14 adjacent aquifers to the lake. Remotely-sensed data sets including evaporation from the lake and water extend area of the lake.
DOI: 10.17632/4zb3t7zxct.1
title: Biomarkers of metabolism in multiple sclerosis
DOI: 10.17632/vv5dhvnh3d.2
title: Supplementary Information to: Global life-cycle impacts of onshore wind-power plants on bird richness

description: See description document.
DOI: 10.21223/msdjsa/wwioso
title: gkIbvmZvHpd058c6QyoEiL642zyWJQ.docx
DOI: 10.21223/msdjsa/dskbnv
title: 7916_DataDictionary_UniqueIdentifier.xls
DOI: 10.21223/msdjsa
title: Biomart database of potato containing phenotypic and genotypic data on the breeding materials and populations

description: The data generated in the CIP potato breeding program is stored in a “Global Roots & Tubers Base” utilizing the free BioMart software https://research.cip.cgiar.org/gtdms/biomart/.The data have been structured for storage of phenotypic, genotypic, pedigree, geographical, and environmental data. Through the metadata and the search function using filters, the user can retrieve data from the experiments conducted by CIP scientists or NARS partners using CIP materials. The availability of the data is managed in conjunction with the Dataverse following CGIAR open access guidelines. Currently, the database holds data from 500 experiments in 11 different countries and 71 localities conducted from 2002 to 2015. The phenotypic data include important potato traits such as healthy tuber yield, LB resistance, and vitamin and mineral composition. The genotypic data consist of approximately 3,000 SNP marker genotypes on a set of 103 B3 population breeding lines using the SolCAP Infinium Potato SNP platform. Stakeholder preference data from PVS trials are also included in the database: biochemical evaluation (142 books), physiology (6 books), LB exposure (146 books), healthy tuber yield (168 books), and PVS (38 books)
DOI: 10.17632/vgbghtzvt2.4
title: Differentiating responders and non-responders to rTMS treatment for disorder of consciousness using EEG after-effects

description: Fig. 11. Relative power in F3. The difference within groups was only found in delta relative power after rTMS (A). *P&lt;0.05. Fig. 4. Relative power in P3. The difference between groups was only found in alpha relative power whatever before and after rTMS (C). *P&lt;0.05. Fig. 5. Relative power in P4. The difference between groups was only found in alpha relative power whatever before and after rTMS (C). *P&lt;0.05. No significant diffence of relative power in F4, O1, O2, T3 and T4 between and within groups (Fig. 6., Fig. 7., Fig. 8., Fig. 9., Fig. 10,).
DOI: 10.17632/pcdj7z58p6.1
title: Data for: The Line-of-Sight Extinction record at Gale Crater as observed by MSL's Mastcam and Navcam through ∼2500 sols

description: Mean line-of-sight extinction measurements (km^-1) in Gale Crater using images of the northern crater rim from the Mars Science Laboratory Rover, Curiosity. Data relates to the paper: "The Line-of-Sight Extinction record at Gale Crater as observed by MSL's Mastcam and Navcam through ∼2500 sols", C. L. Smith et al. (2020)
DOI: 10.17632/g278w62zpg.1
title: Paused Transcription Test (Lange & Matthews, 2020)
DOI: 10.17632/z6y43j6jbj.3
title: Dataset (AKAMINE_1)

description: Dataset of "Risk Factors of Venous Thromboembolism and Usefulness of a Risk Scoring System in Patients with Lower Limb Orthopedic Surgery: A Single-Center Retrospective Cohort Study "
DOI: 10.17632/snz6rnyx3v.1
title: SARS-CoV-2 virus stability in GTR-VTM

description: GTR-VTM NP swab transport media was tested for stabilizing SARS-CoV-2 viral RNA and inactivated SARS-CoV-2 virus for up to 10 days at 4 temperatures. UniTranz-RT Transport System (UTM) was used to compare as this was the only viral transport media that we were able to source. Four temperatures were chosen; 3 are ambient temps and the 56C is a Department Of Transportation (DOT) suggested test temperature. The temperatures tested were 25C (refrigerated lab ambient temp), 37C (ambient), 46C (ambient) and 56C (transportation temp per DOT). Study setup: The GTR-VTM and UTM samples were spiked with nasal matrix and either SARS-CoV-2 viral RNA (study 1) or virus (study 2) and placed at the 4 temperatures. Matched control samples were placed at -80C. The analysis of all the samples was done following CDC's EUA approved protocol for COVID-19 RT-PCR molecular assay (https://www.fda.gov/media/134922/download). The CDC's SARS-CoV-2 panel of oligonucleotides was sourced from Integrated DNA Technologies (IDT). The viral RNA was extracted from 140uL of sample with the CDC suggested QIAamp viral RNA kit. RNA was eluted with 140uL of elution buffer. Five uL of extracted RNA sample was amplified with TaqPath mastermix in a total volume of 20 uL per CDC's protocol. StepOne Plus thermal cycler was used for quantification. At each time point, -80C samples were extracted alongside experimental samples. Outcome: The GTR-VTM chemistry inhibits microbial growth (no colonies observed when saliva spiked into GTR-VTM is plated on blood agar plates) and all RNase activity to keep the viral RNA and virus stable for extended periods of time at high temperature. In study 1, (file: Stress Study 1- RNA spike-in) viral RNA spiked into GTR-VTM was stable for 10 days at 25C and 37C and up to 5 days at 46C and 56C. We were not able to recover any SARS-CoV-2 viral RNA spiked in UTM as the RNA degraded immediately and so UTM samples with spiked RNA were abandoned in study 1 after day 1. The only way to recover RNA from UTM was to add lysis buffer first to the UTM and then spike with viral RNA (data not shown). The percent recovery of RNA was determined with comparison to the matched -80C controls. Each sheet represents the RT-PCR data for a single temperatures and day e.g. Study 1_25C, d1 means Day 1 collected samples for spiked viral RNA in GTR-VTM incubated at 25C, and so on. The -80C controls for all days are from rows G1 to H12. Only the 1/125 samples and only the GTR-VTM and UTM data have been reported in the manuscript. ANOVA analysis of study 2 data, (file: Study 2 - Virus spike in ANOVA) performed by Summer Rose. A rejection threshold of (CTCtrl + 3) was weighed against each sample based on the -80C control values. ANOVA predicts that the GTR-VTM will stabilize the SARS-CoV-2 virus at all temperatures for up to 23 days at all 4 temperatures. SARS-CoV-2 virus spiked in UTM will stabilize virus for 10 days and 5 days at 25C and 37C resp., but not at 46C and 56C.
DOI: 10.5517/cc1kt3hz
title: CCDC 1454101: Experimental Crystal Structure Determination

description: Related Article: Mainak Debnath, Malay Dolai and Mahammad Ali|2016|CSD Communication|||
description: Related Article: Mainak Debnath, Malay Dolai, Kaberi Pal, Arpan Dutta, Hon Man Lee, Mahammad Ali|2018|Inorg.Chim.Acta|480|149|doi:10.1016/j.ica.2018.04.044
DOI: 10.5517/ccdc.csd.ccxndjg
title: CCDC 853756: Experimental Crystal Structure Determination

description: Related Article: Mainak Debnath, Malay Dolai, Kaberi Pal, Arpan Dutta, Hon Man Lee, Mahammad Ali|2018|Inorg.Chim.Acta|480|149|doi:10.1016/j.ica.2018.04.044
DOI: 10.21223/gf7pfl/hmjh2i
title: 8310_Potato_landrace_inventory.tab

description: :unav
DOI: 10.21223/gf7pfl/8n8sbn
title: 8310_Wild_potato_inventory.tab

description: :unav
DOI: 10.21223/gf7pfl/vjffwb
title: 8310_DataDictionary_UniqueIdentifier.xls

description: :unav
DOI: 10.21223/gf7pfl/j1uw0b
title: 8310_In_situ_hotspot_inventory.tab

description: :unav
DOI: 10.21223/gf7pfl/kqwp4u
title: 8310_DataDictionary.xls

description: :unav
DOI: 10.21223/gf7pfl/osmwkm
title: 8310_DataDictionary.xlsx
DOI: 10.21223/gf7pfl/oitfc3
title: 8310_In_situ_hotspot_inventory.tab
DOI: 10.21223/gf7pfl/ssivk1
title: 8310_Wild_potato_inventory.tab
DOI: 10.21223/gf7pfl
title: Dataset for: Inventory of potato (potato landrace inventory and wild potato inventory) in Peru

description: This dataset contains a list of 730 potato landraces that were characterized on farm in 2 diversity hotspots (Apurimac and Huancavelica) of Peru, using SSR microsatellites, flow cytometry and morphologic descriptors for potato landraces. The list was compiled from the baseline data which was collected between the years 2013 and 2016. No germplasm is stored ex situ as the purpose of the baseline was to determine the total diversity in the respective hotspot communities.
DOI: 10.17632/nmv7x3ptfj.1
title: Genetic inactivation of RIP1 kinase does not ameliorate disease in a mouse model of ALS. Dominguez et al., Cell Death and Differentiation, 2020
DOI: 10.17632/wxb2ys8vx9.1
title: 2020 Eur Radiol (T1 mapping and CMR strain correlation in MVP patients)

description: Abstract Objectives T1 mapping (T1-map) and cardiac magnetic resonance feature tracking (CMR-FT) techniques have been introduced for the early detection of interstitial myocardial fibrosis and deformation abnormalities. We sought to demonstrate that T1-map and CMR-FT may identify the presence of subclinical myocardial structural changes in patients with mitral valve prolapse (MVP). Methods Consecutive MVP patients with moderate-to-severe mitral regurgitation and comparative matched healthy subjects were prospectively enrolled and underwent CMR-FT analysis to calculate 2D global and segmental circumferential (CS) and radial strain (RS) and T1-map to determine global and segmental native T1 (nT1) values. Results Seventy-threeMVP patients (mean age, 57 ± 13 years old; male, 76%; regurgitant volume, 57 ± 21 mL) and 42 matched control subjects (mean age, 56 ± 18 years;male, 74%) were included.MVP patients showed a lower global CS (− 16.3 ± 3.4%vs. − 17.8 ± 1.9%, p = 0.020) and longer global nT1 (1124.9 ± 97.7 ms vs. 1007.4 ± 26.1 ms, p &lt; 0.001) as compared to controls. Moreover, MVP patients showed lower RS and CS in basal (21.6 ± 12.3% vs. 27.6 ± 8.9%, p = 0.008, and − 13.0 ± 6.7% vs. − 14.9 ± 4.1%, p = 0.013) and mid-inferolateral (20.6 ± 10.7% vs. 28.4 ± 8.7%, p &lt; 0.001, and − 12.8 ± 6.3% vs. − 16.5 ± 4.0%, p &lt; 0.001) walls as compared to other myocardial segments. Similarly,MVP patients showed longer nT1 values in basal (1080 ± 68 ms vs. 1043 ± 43 ms, p &lt; 0.001) and mid-inferolateral (1080 ± 77 ms vs. 1034 ± 37 ms, p &lt; 0.001) walls as compared to other myocardial segments. Of note, nT1 values were significantly correlated with CS (r, 0.36; p &lt; 0.001) and RS (r, 0.37; p &lt; 0.001) but not with regurgitant volume. Conclusions T1-map and CMR-FT identify subclinical left ventricle tissue changes in patients with MVP. Further studies are required to correlate these subclinical tissue changes with the outcome.
DOI: 10.5281/zenodo.4019091
title: On the Untriviality of Trivial Packages: An Empirical Study of npm JavaScript Packages

description: Nowadays, developing software would be unthinkable without the use of third-party packages. Although such code reuse helps to achieve rapid continuous delivery of software to end-users, blindly reusing code has its pitfalls. For example, prior work has investigated the rationale for using packages that implement simple functionalities, known as trivial packages. This prior work showed that although these trivial packages were simple, they were popular and prevalent in the npm ecosystem. This popularity and prevalence of trivial packages peaked our interest in questioning the ‘triviality of trivial packages’. To better understand and examine the triviality of trivial packages, we mine a large set of JavaScript projects that use trivial npm packages and evaluate their relative centrality. Specifically, we evaluate the triviality from two complementary points of view: based on project usage and ecosystem usage of these trivial packages. Our result shows that trivial packages are being used in central JavaScript files of a software project. Additionally, by analyzing all external package API calls in these JavaScript files, we found that a high percentage of these API calls are attributed to trivial packages. Therefore, these packages play a significant role in JavaScript files. Furthermore, in the package dependency network, we observed that 16.8% packages are trivial and in some cases removing a trivial package can impact approximately 29% of the ecosystem. Overall, our finding indicates that although smaller in size and complexity, trivial packages are highly depended on packages by JavaScript projects. Additionally, our study shows that although they might be called trivial, nothing about trivial packages is trivial.
DOI: 10.21223/x56pdn/9ytfci
title: 12537_Data_dictionary.xlsx
DOI: 10.21223/x56pdn/zwq7us
title: 12537_UniqueIdentifier.tab
DOI: 10.21223/x56pdn/n9rdo7
title: 12537_PTYield022018_Melkasa.tab
DOI: 10.21223/x56pdn/zrlwz3
title: 12537_PTYield022018_Gode.tab
DOI: 10.21223/x56pdn/lfyao3
title: 12537_PTYield022018_Gode.tab
DOI: 10.21223/x56pdn/svqp7j
title: 12537_UniqueIdentifier.tab
DOI: 10.21223/x56pdn/n7wkhg
title: 12537_PTYield022018_Melkasa.tab
DOI: 10.21223/x56pdn
title: Dataset for: Assessment of at least 200 lines from LBHT x LTVR population in two locations under heat stress

description: 225 genotypes were evaluated under a augmented block design (unreplicated treatments) in the two locations (Gode and Melkasa) in Ethiopia. Five controls were used: Shangi, Gudene, Belete, Wechecha and CIP301056.54 repeated five times each. The planting date was in February and the harvest was in July, 2018. The plots were constituted of 5 plants, allocated 0.3m between plants and 0.75m between rows. In both experiments the yield potential was evaluated and 66 clones were selected for yield performance under heat stress.
DOI: 10.21223/dohzuw/af4rid
title: CIPCROSS System for Botanical Seed Inventory Adapted for at Least Two Crops.docx

description: :unav
DOI: 10.21223/dohzuw/gu7mxy
title: cd63726a0ca40626fd0f806e17300924.docx
DOI: 10.21223/dohzuw
title: CIPCROSS System for Botanical Seed Inventory Adapted for at Least Two Crops

description: The Botanical Seed Inventory for Clonal Crop Breeding (CIPCROSS) is an open source software that supports activities in the greenhouse and laboratory of the potato breeder from CIP. It is available online and can be used for potato and other crops. It comprises two main tools: a) The Crossing Management Tool facilitates the barcode labeling of progenitors and crosses, storing the information in a database and generating automated reports. b) The Botanical Seed Inventory Tool facilitates the recording and accessing of information on the location of botanical seed in the storage facility, documentation of germination tests, updates on seed stocks, information about crosses and breeder‘s name. The system helps breeders develop, integrate and organize their information in a database, avoid typing mistakes and save work time (24 person-hours/14250 labels). Finally, all the information generated is saved in BioMart: a centralized data repository which facilitates access to the information with queries and filters for advanced search (See Figure 1). The users can download these tools through the page web of “The Global Trial Data Management System from CIP”.
DOI: 10.6084/m9.figshare.12810410
title: East Asian-South Asian dataset (Landini et al. 2020)

description: Genome-wide genotype data generated for Asian populations relying on rice as a staple food and merged with reference datasets for worldwide populations as described in Landini et al. 2020 (Evolutionary Applications).<br><br>
DOI: 10.21223/g07lcm/4xeng5
title: Literature based mapping and analysis of the Ugandan potato value chain.docx

description: :unav
DOI: 10.21223/g07lcm/rhvrci
title: 034608c6b8669a959dbc0af7747c6c1b.docx
DOI: 10.21223/g07lcm
title: Dataset for: Literature based mapping and analysis of the Ugandan potato value chain

description: This document is a working document. It is not destined for publication. It summarizes the current publicly available literature on the Ugandan potato value chain. Its objective is to give its readers an overview and a better understanding of the actual state of the potato value chain in Uganda.
DOI: 10.6084/m9.figshare.12928763
title: OECD R Package: A Use Case

description: Access OECD countries and selected non-member economies data through the OECD API.
DOI: 10.6084/m9.figshare.12607730.v9
title: Figure 4 "FoxP expression analysis and role in locomotion"

description: Figure 4:<br>- Confocal stacks<br>- Excel files with cell counting<br>- qPCR data
DOI: 10.5281/zenodo.4019184
title: On the Untriviality of Trivial Packages: An Empirical Study of npm JavaScript Packages

description: Nowadays, developing software would be unthinkable without the use of third-party packages. Although such code reuse helps to achieve rapid continuous delivery of software to end-users, blindly reusing code has its pitfalls. For example, prior work has investigated the rationale for using packages that implement simple functionalities, known as trivial packages. This prior work showed that although these trivial packages were simple, they were popular and prevalent in the npm ecosystem. This popularity and prevalence of trivial packages peaked our interest in questioning the ‘triviality of trivial packages’. To better understand and examine the triviality of trivial packages, we mine a large set of JavaScript projects that use trivial npm packages and evaluate their relative centrality. Specifically, we evaluate the triviality from two complementary points of view: based on project usage and ecosystem usage of these trivial packages. Our result shows that trivial packages are being used in central JavaScript files of a software project. Additionally, by analyzing all external package API calls in these JavaScript files, we found that a high percentage of these API calls are attributed to trivial packages. Therefore, these packages play a significant role in JavaScript files. Furthermore, in the package dependency network, we observed that 16.8% packages are trivial and in some cases removing a trivial package can impact approximately 29% of the ecosystem. Overall, our finding indicates that although smaller in size and complexity, trivial packages are highly depended on packages by JavaScript projects. Additionally, our study shows that although they might be called trivial, nothing about trivial packages is trivial.
DOI: 10.6084/m9.figshare.7035731
title: Code and data to reproduce "Variability in dispersal and spatial spread in two-species communities"

description: Data and code to reproduce the manuscript:<br>&gt; Dallas, T, B Melbourne, A Hastings. 2020. "Community context and dispersal stochasticity drive variation in spatial spread" _Journal of Animal Ecology_ DOI: 10.1111/1365-2656.13331
DOI: 10.6084/m9.figshare.7035731.v1
title: Code and data to reproduce "Variability in dispersal and spatial spread in two-species communities"

description: Data and code to reproduce the manuscript:<br>&gt; Dallas, T, B Melbourne, A Hastings. 2020. "Community context and dispersal stochasticity drive variation in spatial spread" _Journal of Animal Ecology_ DOI: 10.1111/1365-2656.13331
DOI: 10.5281/zenodo.4019052
title: Ooh Na Na

description: This is a gzipped four-column TSV file that has hashes, prefixes, identifiers, and names for lots of biomedical entities, drawing from the OBO Foundry, ontologies in the Ontology Lookup Service, and many other nomenclature consortia that just haven't made it to the prime-time of standardized goodness. Ultimate, this dataset helps answer the question: what's my name? The hash is the hex digest of the MD5 hash of the CURIE in the form of &lt;prefix&gt;:&lt;identifier&gt;. It's really a lot of work to get this stuff, so I tried to make it easy. It was generated with the following code in the shell: <pre>pip install git+https://github.com/pyobo/pyobo.git obo database names</pre>
description: The 1.2.0 version includes the addition of PubChem, ChEBML, and NPASS
DOI: 10.25387/g3.11935959.v1
title: Supplemental Material for Ghosh et al., 2020

description: Supplemental material for: G3/2020/401204
DOI: 10.25387/g3.11935959
title: Supplemental Material for Ghosh et al., 2020

description: Supplemental material for: G3/2020/401204
DOI: 10.5281/zenodo.3924701
title: On the Untriviality of Trivial Packages: An Empirical Study of npm JavaScript Packages

description: Nowadays, developing software would be unthinkable without the use of third-party packages. Although such code reuse helps to achieve rapid continuous delivery of software to end-users, blindly reusing code has its pitfalls. For example, prior work has investigated the rationale for using packages that implement simple functionalities, known as trivial packages. This prior work showed that although these trivial packages were simple, they were popular and prevalent in the npm ecosystem. This popularity and prevalence of trivial packages peaked our interest in questioning the ‘triviality of trivial packages’. To better understand and examine the triviality of trivial packages, we mine a large set of JavaScript projects that use trivial npm packages and evaluate their relative centrality. Specifically, we evaluate the triviality from two complementary points of view: based on project usage and ecosystem usage of these trivial packages. Our result shows that trivial packages are being used in central JavaScript files of a software project. Additionally, by analyzing all external package API calls in these JavaScript files, we found that a high percentage of these API calls are attributed to trivial packages. Therefore, these packages play a significant role in JavaScript files. Furthermore, in the package dependency network, we observed that 16.8% packages are trivial and in some cases removing a trivial package can impact approximately 29% of the ecosystem. Overall, our finding indicates that although smaller in size and complexity, trivial packages are highly depended on packages by JavaScript projects. Additionally, our study shows that although they might be called trivial, nothing about trivial packages is trivial.
DOI: 10.6084/m9.figshare.12928832
title: Dataset from Analytical and clinical performances of five immunoassays for the detection of SARS-CoV-2 antibodies in comparison with neutralization activity

description: Dataset including data from 5 different serological assay and neutralization activity<br>
DOI: 10.5281/zenodo.4018172
title: Wikidata Dump Ok

description: RDF dump of wikidata produced with wdumps. H<br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.4018171
title: Wikidata Dump Ok

description: RDF dump of wikidata produced with wdumps. H<br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0