cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/j8hcxj
title: ' Henicorhynchus' thaitui, a new species of cavefish from Central Vietnam (Teleostei, Cyprinidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Nguyen, Dinh Tao, Ho, Anh Tuan, Hoang, Ngoc Thao, Wu, Hua, Zhang, E (2020): ' Henicorhynchus' thaitui, a new species of cavefish from Central Vietnam (Teleostei, Cyprinidae). ZooKeys 965: 85-101, DOI: http://dx.doi.org/10.3897/zookeys.965.52751, URL: http://dx.doi.org/10.3897/zookeys.965.52751
DOI: 10.6084/m9.figshare.3408247.v2
title: Transcript and genome assemblies of Atlantic cod

description: NEWB454: An assembly based on 454 sequencing reads and sequenced BAC-ends. Assembled with Newbler 3.0. CA454ILM: An assembly based on Illumina and 454 sequencing reads. Assembled with Celera Assembler. CA454PB: An assembly based on Illumina, 454 and PacBio sequencing reads. Assembled with Celera Assembler. ALPILM: An assembly based on Illumina reads. Assembled with ALLPATHS-LG. gadMor2: An assembly reconciliation of NEWB454, ALPILM, CA454PB, CA454ILM put into linkage groups. trinity_cod_rna: A Trinity assembly of Illumina RNA reads from 10.1016/j.redox.2015.06.003. newbler_cod_rna: A Newbler assembly of 454 and Sanger reads from 10.1038/nature10342 and Sanger reads from 10.1186/1471-2164-13-443. isoseq_cod_rna: A IsoSeq clustering of PacBio RNA reads.te_comprehensive_cod_replib: The repeat library used for annotation TEs.<br>
DOI: 10.34711/inptdat.248
title: Unified modelling of low-current short-length arcs between copper electrodes

description: In this work we present for the first time a unified model of a low-current short-length arc between copper electrodes. The model employs one-dimensional fluid description of the plasma in argon and copper vapour at atmospheric pressure and the heat transfer in the electrodes made of copper. The solution of the particle and energy conservation of electrons and heavy particles is coupled with the solution of the Poisson equation, from which the self-consistent electric field is obtained. The operation of the non-refractory cathode is based on thermo-field emission. Heat fluxes from the plasma to the electrodes are considered so that a phase change and evaporation from the cathode and a release of copper atoms into the plasma are taken into account. The influence of the copper atoms and ions on the plasma properties is analysed and discussed. The model's predictions are compared with experimental data and a qualitative agreement is obtained besides the restrictions of the one-dimensional fluid model.
DOI: 10.15468/6e48s5
title: A new macrolepidopteran moth (Insecta, Lepidoptera, Geometridae) in Miocene Dominican amber

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhang, Weiting, Shih, Chungkun, Shih, YuHong, Ren, Dong (2020): A new macrolepidopteran moth (Insecta, Lepidoptera, Geometridae) in Miocene Dominican amber. ZooKeys 965: 73-84, DOI: http://dx.doi.org/10.3897/zookeys.965.54461, URL: http://dx.doi.org/10.3897/zookeys.965.54461
DOI: 10.6084/m9.figshare.3408223
title: Results_Stango.zip

description: Data of figures in "Characterization of In-Body to On-Body Wireless Radio Frequency Link for Upper Limb Prostheses"
DOI: 10.6084/m9.figshare.3408223.v1
title: Results_Stango.zip

description: Data of figures in "Characterization of In-Body to On-Body Wireless Radio Frequency Link for Upper Limb Prostheses"
DOI: 10.6084/m9.figshare.3408202
title: Full data to ``Prediction and Quantification of Individual Athletic Performance of Runners"

description: Full data to ``Prediction and Quantification of Individual Athletic Performance of Runners"
DOI: 10.6084/m9.figshare.3408202.v1
title: thepowerof10

description: Full data to ``Prediction and Quantification of Individual Athletic Performance of Runners"
DOI: 10.15468/wawpm9
title: Notes on two closely related spider species of the Pholcus phungiformes species group (Araneae, Pholcidae) from Beijing, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Xiang, Shaheen, Shumaila, He, Qiaoqiao, Yao, Zhiyuan (2020): Notes on two closely related spider species of the Pholcus phungiformes species group (Araneae, Pholcidae) from Beijing, China. ZooKeys 965: 1-16, DOI: http://dx.doi.org/10.3897/zookeys.965.56199, URL: http://dx.doi.org/10.3897/zookeys.965.56199
DOI: 10.6084/m9.figshare.3408199
title: Archaic baleen whale from the Kokoamu Greensand: earbones distinguish a new late Oligocene mysticete (Cetacea: Mysticeti) from New Zealand

description: <i>†Whakakai waipata</i> is a new genus and species of Mysticeti from the Kokoamu Greensand (Chattian, Late Oligocene, 25–27 Ma) of ‘The Earthquakes’, North Otago. The holotype of <i>†Whakakai waipata</i> is a partial skull, periotics, tympanic bulla, vertebrae and scapula. The earbone morphology of <i>†Whakakai waipata</i> shows a unique combination of diagnostic features including: massive periotic; flange of posterior process and caudal tympanic process flooring stapedial muscle fossa; and an elongated stylomastoid fossa that invades the robust posterior process of the periotic. The tympanoperiotic features in <i>†Whakakai waipata</i> suggest a different acoustic niche from other Oligocene mysticetes, and by inference different feeding habits and habitat. http://zoobank.org/NomenclaturalActs/9D04EC04-1425-4631-9B96-3C279C51E928 http://zoobank.org/urn:lsid:zoobank.org:act:9D04EC04-1425-4631-9B96-3C279C51E928
DOI: 10.6084/m9.figshare.3408199.v1
title: Archaic baleen whale from the Kokoamu Greensand: earbones distinguish a new late Oligocene mysticete (Cetacea: Mysticeti) from New Zealand

description: <i>†Whakakai waipata</i> is a new genus and species of Mysticeti from the Kokoamu Greensand (Chattian, Late Oligocene, 25–27 Ma) of ‘The Earthquakes’, North Otago. The holotype of <i>†Whakakai waipata</i> is a partial skull, periotics, tympanic bulla, vertebrae and scapula. The earbone morphology of <i>†Whakakai waipata</i> shows a unique combination of diagnostic features including: massive periotic; flange of posterior process and caudal tympanic process flooring stapedial muscle fossa; and an elongated stylomastoid fossa that invades the robust posterior process of the periotic. The tympanoperiotic features in <i>†Whakakai waipata</i> suggest a different acoustic niche from other Oligocene mysticetes, and by inference different feeding habits and habitat. http://zoobank.org/NomenclaturalActs/9D04EC04-1425-4631-9B96-3C279C51E928 http://zoobank.org/urn:lsid:zoobank.org:act:9D04EC04-1425-4631-9B96-3C279C51E928
DOI: 10.6084/m9.figshare.3408196
title: Determinants of Adherence to Option B+ Antiretroviral Therapy among Pregnant and Lactating Women Attending Public Hospitals in Dire Dawa and Harar, Ethiopia

description: <b>Background</b>: HIV infection among children accounts 30 % of the total new infection in Ethiopia. To reduce pediatric HIV infection, antiretroviral drugs are provided to all HIV positive pregnant and lactating mothers since 2013. The effectiveness of such program is determined by mother’s adherence to the regimen, which is indirectly influenced by socio-demographic and behavioral factors. Therefore this study aimed at assessing the level and determinatesof option B+ Aantiretroviral Therapy (ART) adherence among pregnant and lactating women attending public hospitals in Harar and Dire Dawa, Ethiopia, 2016. <b>Method</b>: A facility based cross sectional study was conducted on 359 pregnant and lactating women attending ART clinics at four public health facilities in Harar and Dire Dawa cities, Eastern Ethiopia. Data were collected using pretested, semi structured questionnaire and analyzed using SPSS version 16. Adequate adherence for ART was determined if women took 25 pills and above per month. In crude analysis, variables with p value less than 0.25 were kept in the final adjusted analysis. Variables with p value less than 0.05 in final analysis were considered significantly associated with the outcome variable. <b>Result</b>: About 50 (16.4%) of participants were pregnant and the remaining were lactating women. Antenatal care (ANC) attendance during pregnancy was reported by 246 (80.9%) respondents. Good attitude on prevention of mother to child transmission was reported by 189(62.2%). Adequate adherence was achieved by 251(82.6%) of study participants. Women from urban (AOR= 4.1, 1.7-9.7), having ANC follow up (AOR= 3.8, 1.3-11.3), obtained husband support (AOR=2.7, 1.05-6.8), obtained ART counseling (AOR=2.5, 1-6.3), having good attitude to PMTCT (AOR=2.4, 1-5.7) were significantly associated with adequate adherence to option B+ ART adherence. <b>Conclusion</b>: A fifth of study participants don’t have adequate adherence. Factors affecting adherence can be modified with adequate and proper counseling. Hence, it is advisable to give due attention to the context of women to achieve high PMTCT targets.
DOI: 10.6084/m9.figshare.3408196.v1
title: Determinants of Adherence to Option B+ Antiretroviral Therapy among Pregnant and Lactating Women Attending Public Hospitals in Dire Dawa and Harar, Ethiopia

description: <b>Background</b>: HIV infection among children accounts 30 % of the total new infection in Ethiopia. To reduce pediatric HIV infection, antiretroviral drugs are provided to all HIV positive pregnant and lactating mothers since 2013. The effectiveness of such program is determined by mother’s adherence to the regimen, which is indirectly influenced by socio-demographic and behavioral factors. Therefore this study aimed at assessing the level and determinatesof option B+ Aantiretroviral Therapy (ART) adherence among pregnant and lactating women attending public hospitals in Harar and Dire Dawa, Ethiopia, 2016. <b>Method</b>: A facility based cross sectional study was conducted on 359 pregnant and lactating women attending ART clinics at four public health facilities in Harar and Dire Dawa cities, Eastern Ethiopia. Data were collected using pretested, semi structured questionnaire and analyzed using SPSS version 16. Adequate adherence for ART was determined if women took 25 pills and above per month. In crude analysis, variables with p value less than 0.25 were kept in the final adjusted analysis. Variables with p value less than 0.05 in final analysis were considered significantly associated with the outcome variable. <b>Result</b>: About 50 (16.4%) of participants were pregnant and the remaining were lactating women. Antenatal care (ANC) attendance during pregnancy was reported by 246 (80.9%) respondents. Good attitude on prevention of mother to child transmission was reported by 189(62.2%). Adequate adherence was achieved by 251(82.6%) of study participants. Women from urban (AOR= 4.1, 1.7-9.7), having ANC follow up (AOR= 3.8, 1.3-11.3), obtained husband support (AOR=2.7, 1.05-6.8), obtained ART counseling (AOR=2.5, 1-6.3), having good attitude to PMTCT (AOR=2.4, 1-5.7) were significantly associated with adequate adherence to option B+ ART adherence. <b>Conclusion</b>: A fifth of study participants don’t have adequate adherence. Factors affecting adherence can be modified with adequate and proper counseling. Hence, it is advisable to give due attention to the context of women to achieve high PMTCT targets.
DOI: 10.6084/m9.figshare.3408193
title: Transcriptome-wide mapping of RNA 5-methylcytosine in Arabidopsis mRNAs and ncRNAs

description: This paper describes the first transcrriptome-wide identification of 5-methylcytosine modifications in plants.<br>Post-transcriptional methylation of RNA cytosine residues to 5-methylcytosine (m5C) is an important modification with diverse roles such as regulating stress responses, stem cell proliferation and RNA metabolism. Here, we use RNA bisulfite sequencing (bsRNA-seq) for transcriptome-wide quantitative mapping of m5C in the model plant, <i>Arabidopsis thaliana</i>. We discover more than a thousand m5C sites in Arabidopsis mRNAs, long non-coding RNAs and other non-coding RNAs across three tissue types; siliques, seedling shoots and roots, and validate a number of these sites. Quantitative differences in methylated sites between these three tissues suggest tissue-specific regulation of m5C. Perturbing the RNA m5C methyltransferase TRM4B resulted in loss of m5C sites on mRNAs and non-coding RNAs and reduced the stability of tRNAAsp(GTC). We also demonstrate the importance of m5C in plant development as <i>trm4b</i> mutants have shorter primary roots due to reduced cell division in the root apical meristem. In addition, <i>trm4b</i> mutants show increased sensitivity to oxidative stress. Finally, we provide the first insights into the targeting mechanism of TRM4B by demonstrating that a 50 nt sequence flanking m5C C3349 in MAG5 mRNA is sufficient to confer methylation of a transgene reporter in <i>Nicotiana benthamiana.</i><br>
DOI: 10.6084/m9.figshare.3408193.v2
title: Transcriptome-wide mapping of RNA 5-methylcytosine in Arabidopsis mRNAs and ncRNAs

description: This paper describes the first transcrriptome-wide identification of 5-methylcytosine modifications in plants.<br>Post-transcriptional methylation of RNA cytosine residues to 5-methylcytosine (m5C) is an important modification with diverse roles such as regulating stress responses, stem cell proliferation and RNA metabolism. Here, we use RNA bisulfite sequencing (bsRNA-seq) for transcriptome-wide quantitative mapping of m5C in the model plant, <i>Arabidopsis thaliana</i>. We discover more than a thousand m5C sites in Arabidopsis mRNAs, long non-coding RNAs and other non-coding RNAs across three tissue types; siliques, seedling shoots and roots, and validate a number of these sites. Quantitative differences in methylated sites between these three tissues suggest tissue-specific regulation of m5C. Perturbing the RNA m5C methyltransferase TRM4B resulted in loss of m5C sites on mRNAs and non-coding RNAs and reduced the stability of tRNAAsp(GTC). We also demonstrate the importance of m5C in plant development as <i>trm4b</i> mutants have shorter primary roots due to reduced cell division in the root apical meristem. In addition, <i>trm4b</i> mutants show increased sensitivity to oxidative stress. Finally, we provide the first insights into the targeting mechanism of TRM4B by demonstrating that a 50 nt sequence flanking m5C C3349 in MAG5 mRNA is sufficient to confer methylation of a transgene reporter in <i>Nicotiana benthamiana.</i><br>
DOI: 10.6084/m9.figshare.3408193.v1
title: David_et_al_2016.pdf

description: This paper describes the first transcrriptome-wide identification of 5-methylcytosine modifications in plants.<br>Post-transcriptional methylation of RNA cytosine residues to 5-methylcytosine (m5C) is an important modification with diverse roles such as regulating stress responses, stem cell proliferation and RNA metabolism. Here, we use RNA bisulfite sequencing (bsRNA-seq) for transcriptome-wide quantitative mapping of m5C in the model plant, <i>Arabidopsis thaliana</i>. We discover more than a thousand m5C sites in Arabidopsis mRNAs, long non-coding RNAs and other non-coding RNAs across three tissue types; siliques, seedling shoots and roots, and validate a number of these sites. Quantitative differences in methylated sites between these three tissues suggest tissue-specific regulation of m5C. Perturbing the RNA m5C methyltransferase TRM4B resulted in loss of m5C sites on mRNAs and non-coding RNAs and reduced the stability of tRNAAsp(GTC). We also demonstrate the importance of m5C in plant development as <i>trm4b</i> mutants have shorter primary roots due to reduced cell division in the root apical meristem. In addition, <i>trm4b</i> mutants show increased sensitivity to oxidative stress. Finally, we provide the first insights into the targeting mechanism of TRM4B by demonstrating that a 50 nt sequence flanking m5C C3349 in MAG5 mRNA is sufficient to confer methylation of a transgene reporter in <i>Nicotiana benthamiana.</i><br>
DOI: 10.6084/m9.figshare.3408073
title: Data from: Fast robust SUR with economical and actuarial applications

description: The seemingly unrelated regression (SUR) model is a generalization of a linear regression model consisting of more than one equation, where the error terms of these equations are contemporaneously correlated. The standard Feasible Generalized Linear Squares (FGLS) estimator is efficient as it takes into account the covariance structure of the errors, but it is also very sensitive to outliers. The robust SUR estimator of Bilodeau and Duchesne (Canadian Journal of Statistics, 28:277-288, 2000) can accommodate outliers, but it is hard to compute. First we propose a fast algorithm, FastSUR, for its computation and show its good performance in a simulation study. We then provide diagnostics for outlier detection and illustrate them on a real data set from economics. Next we apply our FastSUR algorithm in the framework of stochastic loss reserving for general insurance. We focus on the General Multivariate Chain Ladder (GMCL) model that employs SUR to estimate its parameters. Consequently, this multivariate stochastic reserving method takes into account the contemporaneous correlations among run-off triangles and allows structural connections between these triangles. We plug in our FastSUR algorithm into the GMCL model to obtain a robust version.
DOI: 10.6084/m9.figshare.3408073.v1
title: Data from: Fast robust SUR with economical and actuarial applications

description: The seemingly unrelated regression (SUR) model is a generalization of a linear regression model consisting of more than one equation, where the error terms of these equations are contemporaneously correlated. The standard Feasible Generalized Linear Squares (FGLS) estimator is efficient as it takes into account the covariance structure of the errors, but it is also very sensitive to outliers. The robust SUR estimator of Bilodeau and Duchesne (Canadian Journal of Statistics, 28:277-288, 2000) can accommodate outliers, but it is hard to compute. First we propose a fast algorithm, FastSUR, for its computation and show its good performance in a simulation study. We then provide diagnostics for outlier detection and illustrate them on a real data set from economics. Next we apply our FastSUR algorithm in the framework of stochastic loss reserving for general insurance. We focus on the General Multivariate Chain Ladder (GMCL) model that employs SUR to estimate its parameters. Consequently, this multivariate stochastic reserving method takes into account the contemporaneous correlations among run-off triangles and allows structural connections between these triangles. We plug in our FastSUR algorithm into the GMCL model to obtain a robust version.
DOI: 10.6084/m9.figshare.3408067
title: Evaluation of Alternatives to Winter Closure of Black Sea Bass Pot Gear: Projected Impacts on Catch and Risk of Entanglement with North Atlantic Right Whales <i>Eubalaena glacialis</i>

description: Time–area closures have been widely used in fisheries management to prevent overfishing and reduce the bycatch of protected species. Due to quota overages and concerns about entanglement of federally protected North Atlantic right whales <i>Eubalaena glacialis</i>, the commercial harvest of Black Sea Bass <i>Centropristis striata</i> using pot gear has been prohibited in the southeastern United States in winter since 2009. Following the rebuilding of the Black Sea Bass stock and a change to the start date of the fishing year, the South Atlantic Fishery Management Council (SAFMC) increased the commercial annual catch limit (ACL) and is considering twelve alternatives to the pot gear closure that would revise the timing and/or spatial extent of the closure. Changes to this closure could affect the annual catch of Black Sea Bass and increase the risk of right whale entanglement in pot gear. Using historical fishing effort, landings, and right whale sightings data, we projected Black Sea Bass landings and the relative risk of right whale entanglement for each closure alternative, expressed in relative risk units (RRU). We predict that the ACL would be caught, resulting in an in-season closure for most of the proposed SAFMC closure alternatives. The relative risk of entanglement, estimated from the spatial and temporal overlap of Black Sea Bass pot gear fishing effort and right whale relative abundance, was lower for some alternatives than for others, and the relative differences between alternatives were consistent among uncertainty scenarios. The SAFMC’s preferred alternative is projected to result in a relatively low increase in risk to North Atlantic right whales (3–15 RRU off North Carolina and 1–12 RRU off Florida–South Carolina). This framework demonstrates the use of temporally dynamic spatial overlays in assessing the impacts of time–area closures with multiple objectives. Received April 23, 2015; accepted January 15, 2016
DOI: 10.6084/m9.figshare.3408067.v1
title: Evaluation of Alternatives to Winter Closure of Black Sea Bass Pot Gear: Projected Impacts on Catch and Risk of Entanglement with North Atlantic Right Whales <i>Eubalaena glacialis</i>

description: Time–area closures have been widely used in fisheries management to prevent overfishing and reduce the bycatch of protected species. Due to quota overages and concerns about entanglement of federally protected North Atlantic right whales <i>Eubalaena glacialis</i>, the commercial harvest of Black Sea Bass <i>Centropristis striata</i> using pot gear has been prohibited in the southeastern United States in winter since 2009. Following the rebuilding of the Black Sea Bass stock and a change to the start date of the fishing year, the South Atlantic Fishery Management Council (SAFMC) increased the commercial annual catch limit (ACL) and is considering twelve alternatives to the pot gear closure that would revise the timing and/or spatial extent of the closure. Changes to this closure could affect the annual catch of Black Sea Bass and increase the risk of right whale entanglement in pot gear. Using historical fishing effort, landings, and right whale sightings data, we projected Black Sea Bass landings and the relative risk of right whale entanglement for each closure alternative, expressed in relative risk units (RRU). We predict that the ACL would be caught, resulting in an in-season closure for most of the proposed SAFMC closure alternatives. The relative risk of entanglement, estimated from the spatial and temporal overlap of Black Sea Bass pot gear fishing effort and right whale relative abundance, was lower for some alternatives than for others, and the relative differences between alternatives were consistent among uncertainty scenarios. The SAFMC’s preferred alternative is projected to result in a relatively low increase in risk to North Atlantic right whales (3–15 RRU off North Carolina and 1–12 RRU off Florida–South Carolina). This framework demonstrates the use of temporally dynamic spatial overlays in assessing the impacts of time–area closures with multiple objectives. Received April 23, 2015; accepted January 15, 2016