cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28365455
title: Additional files for "Antennal RNAseq reveals odorant receptors with sex-biased expression in the common eastern firefly, <i>Photinus pyralis</i>"

description: With their charismatic nighttime flashes, fireflies are a classic organismal system for studying visual mating signal evolution. However, across their diversity, fireflies employ a variety of mating strategies that include both chemical and visual signals. While phylogenetic evidence points to a common ancestor that relied on long-range pheromones, current behavioral evidence suggests that light-dependent flashing fireflies do not use smell for mating. We tested this hypothesis by investigating the olfactory genetics of the nocturnal, light-using common eastern firefly, <i>Photinus pyralis. </i>In insects, odors are primarily detected by odorant receptor (OR) proteins embedded in the dendritic membranes of olfactory receptor neurons. If pheromones are part of mate signaling in light-using fireflies, then one or more OR genes should be upregulated in the antennae of the searching sex (males). We therefore annotated the complete suite of ORs from the genome of <i>P</i>.<i> pyralis</i> and measured expression of OR genes between the sexes.We identified 102 ORs in the <i>Photinus pyralis </i>genome, including the conserved single-copy Orco. Our phylogenetic analysis showed lineage-specific OR diversification in <i>P. pyralis</i> relative to other beetle species. Differential expression analysis of male and female antennae and back legs revealed that a subset of ORs are upregulated in antennae as compared to legs, suggesting a role in adult olfaction. Notably, PpyrOR6 was one of two genes, and the only OR, that was significantly upregulated between male and female antennae, suggesting a role in mating.<br>These findings increase known diversity of insect ORs in an understudied beetle family and suggest that bioluminescent fireflies use multimodal signals during mating.Items included in this FigShare Repository are:S1.PpyrOR_Nucleotides_FINAL_2025_02_27.fastaNucleotide sequences for PpyrORs in fasta formatS2.PpyrOR_Nucleotides_FINAL_2025_02_27.gbNucleotide sequences for PpyrORs in genbank formatS3.PpyrOR_Protein_FINAL_2025_02_27.fastaAmino acid sequences for PpyrORs in fasta formatS4.PpyrOR_Protein_FINAL_2025_02_27.gbAmino acid sequences for PpyrORs in genbank formatS5.PpyrOR_Scaffolds_FINAL_2025_02_27.gffThe gff file of scaffolds used for assessing location and intron/exon structureS6.Queries_Agla-Apla-Hred-Nves-Pser-RdomORs.fastaBeetle ORs used as queries to identify putative PpyrORsS7.PpyrORs_Nves_Apla_Tc_functional_beetles_over100aa_n477_noPSE_noPAR_MUSCLE_no_ambigs_noisyclean_reordered_2025_03_04.fastaAlignment with Ppyr and other beetle ORs that generated the phylogeny in Figure 2S8.run_2.contree_rooted_2025_03_11.newickConsensus maximum likelihood phylogeny from IQtree, rooted in OrcoS9.renumbered_Ppyr_tx_2025_03_04.fnaTranscripts used for salmon analysis, edited to incorporate the gene models described in this study
DOI: 10.6084/m9.figshare.28365455.v1
title: Additional files for "Antennal RNAseq reveals odorant receptors with sex-biased expression in the common eastern firefly, <i>Photinus pyralis</i>"

description: With their charismatic nighttime flashes, fireflies are a classic organismal system for studying visual mating signal evolution. However, across their diversity, fireflies employ a variety of mating strategies that include both chemical and visual signals. While phylogenetic evidence points to a common ancestor that relied on long-range pheromones, current behavioral evidence suggests that light-dependent flashing fireflies do not use smell for mating. We tested this hypothesis by investigating the olfactory genetics of the nocturnal, light-using common eastern firefly, <i>Photinus pyralis. </i>In insects, odors are primarily detected by odorant receptor (OR) proteins embedded in the dendritic membranes of olfactory receptor neurons. If pheromones are part of mate signaling in light-using fireflies, then one or more OR genes should be upregulated in the antennae of the searching sex (males). We therefore annotated the complete suite of ORs from the genome of <i>P</i>.<i> pyralis</i> and measured expression of OR genes between the sexes.We identified 102 ORs in the <i>Photinus pyralis </i>genome, including the conserved single-copy Orco. Our phylogenetic analysis showed lineage-specific OR diversification in <i>P. pyralis</i> relative to other beetle species. Differential expression analysis of male and female antennae and back legs revealed that a subset of ORs are upregulated in antennae as compared to legs, suggesting a role in adult olfaction. Notably, PpyrOR6 was one of two genes, and the only OR, that was significantly upregulated between male and female antennae, suggesting a role in mating.<br>These findings increase known diversity of insect ORs in an understudied beetle family and suggest that bioluminescent fireflies use multimodal signals during mating.Items included in this FigShare Repository are:S1.PpyrOR_Nucleotides_FINAL_2025_02_27.fastaNucleotide sequences for PpyrORs in fasta formatS2.PpyrOR_Nucleotides_FINAL_2025_02_27.gbNucleotide sequences for PpyrORs in genbank formatS3.PpyrOR_Protein_FINAL_2025_02_27.fastaAmino acid sequences for PpyrORs in fasta formatS4.PpyrOR_Protein_FINAL_2025_02_27.gbAmino acid sequences for PpyrORs in genbank formatS5.PpyrOR_Scaffolds_FINAL_2025_02_27.gffThe gff file of scaffolds used for assessing location and intron/exon structureS6.Queries_Agla-Apla-Hred-Nves-Pser-RdomORs.fastaBeetle ORs used as queries to identify putative PpyrORsS7.PpyrORs_Nves_Apla_Tc_functional_beetles_over100aa_n477_noPSE_noPAR_MUSCLE_no_ambigs_noisyclean_reordered_2025_03_04.fastaAlignment with Ppyr and other beetle ORs that generated the phylogeny in Figure 2S8.run_2.contree_rooted_2025_03_11.newickConsensus maximum likelihood phylogeny from IQtree, rooted in OrcoS9.renumbered_Ppyr_tx_2025_03_04.fnaTranscripts used for salmon analysis, edited to incorporate the gene models described in this study
DOI: 10.5281/zenodo.10696019
title: Data and R scripts used for the article "Agronomic treatments to avoid presence of seeds in Nadorcott mandarin II. Effect on seed number per fruit and yield"

description: This are the data and R scripts used for the article "Agronomic treatments to avoid presence of seeds in Nadorcott mandarin II. Effect on seed number per fruit and yield " DOI: https://doi.org/10.1371/journal.pone.0278934

This study aims to evaluate the effect of six treatments (ammonium nitrate, potassium nitrate, sulfur, saccharose, methylcellulose, callose) on seed number per fruit when applied to Nadorcott trees. In this way, we evaluate which of them is more efficient and can be used in the future as an agronomic treatment to avoid seeds in mandarins. The effect of treatments on yield and fruit quality is also reported. To fulfill this main objective, a randomized complete block design experiment with three applications at flowering was performed on trees. Of the six tested treatments, only elemental sulfur was able to significantly reduce seed number by 87% compared to the positive control. This is a very novel result because it is the first time that such an effective treatment has been found. The biggest seed number per fruit was obtained for the saccharose treatment. Treatments did not significantly influence yield or fruit quality. These results are entirely consistent with a previous study that evaluated the effect of the same products on pollen tube growth, and they can help to develop new techniques.
DOI: 10.5281/zenodo.10696020
title: Data and R scripts used for the article "Agronomic treatments to avoid presence of seeds in Nadorcott mandarin II. Effect on seed number per fruit and yield"

description: This are the data and R scripts used for the article "Agronomic treatments to avoid presence of seeds in Nadorcott mandarin II. Effect on seed number per fruit and yield " DOI: https://doi.org/10.1371/journal.pone.0278934

This study aims to evaluate the effect of six treatments (ammonium nitrate, potassium nitrate, sulfur, saccharose, methylcellulose, callose) on seed number per fruit when applied to Nadorcott trees. In this way, we evaluate which of them is more efficient and can be used in the future as an agronomic treatment to avoid seeds in mandarins. The effect of treatments on yield and fruit quality is also reported. To fulfill this main objective, a randomized complete block design experiment with three applications at flowering was performed on trees. Of the six tested treatments, only elemental sulfur was able to significantly reduce seed number by 87% compared to the positive control. This is a very novel result because it is the first time that such an effective treatment has been found. The biggest seed number per fruit was obtained for the saccharose treatment. Treatments did not significantly influence yield or fruit quality. These results are entirely consistent with a previous study that evaluated the effect of the same products on pollen tube growth, and they can help to develop new techniques.
DOI: 10.6084/m9.figshare.28614677
title: Erythema Migrans Biopsies: Co-infections, <i>Borrelia </i>quantification and Morphology

description: Tab-delimited raw data used in the statistical analyses
DOI: 10.6084/m9.figshare.28614677.v2
title: Erythema Migrans Biopsies: Co-infections, <i>Borrelia </i>quantification and Morphology

description: Tab-delimited raw data used in the statistical analyses
DOI: 10.15468/dl.3k4wgx
title: Occurrence Download

description: A dataset containing 5892 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lathyrus angulatus L.",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5892 records from 256 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009230-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/chaw-wtb6
title: Measurement of POPs (persistent organic pollutants) at Zeppelin mountain (Ny-Ålesund)

description: Measurement of POPs (persistent organic pollutants) at Zeppelin mountain (Ny-Ålesund)
DOI: 10.15468/dl.8298fd
title: Occurrence Download

description: A dataset containing 1068 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sinomenium acutum (Thunb.) Rehder & E.H.Wilson"
 ]
}

 The dataset includes 1068 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006830-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15614036
title: Research data accompanying the publication The Hidden Subtlety of Beer Foam Stability: A Blueprint for Advanced Foam Formulations

description: Proteomics results (under the proprietary Spectronaut file type) accompanying the publication "The Hidden Subtlety of Beer Foam Stability: A Blueprint for Advanced Foam Formulations".
DOI: 10.5281/zenodo.15614037
title: Research data accompanying the publication The Hidden Subtlety of Beer Foam Stability: A Blueprint for Advanced Foam Formulations

description: Proteomics results (under the proprietary Spectronaut file type) accompanying the publication "The Hidden Subtlety of Beer Foam Stability: A Blueprint for Advanced Foam Formulations".
DOI: 10.5281/zenodo.14213318
title: RADIT: A Machine Learning-Reconstructed Dataset of River Discharge, Temperature, and Heat Flux into the Arctic Ocean

description: The Reconstructed Arctic-draining river DIscharge and Temperature (RADIT) dataset provides daily records of river discharge, temperature, and heat flux for 32 major Arctic-draining rivers from 1950 to 2023. Using machine learning methods and ERA5-Land reanalysis data, we reconstructed these key hydrological variables with high accuracy (NSE > 0.9).
DOI: 10.5281/zenodo.15278692
title: RADIT: A Machine Learning-Reconstructed Dataset of River Discharge, Temperature, and Heat Flux into the Arctic Ocean

description: The Reconstructed Arctic-draining river DIscharge and Temperature (RADIT) dataset provides daily records of river discharge, temperature, and heat flux for 25 major Arctic-draining rivers from 1950 to 2023. Using machine learning methods and ERA5-Land reanalysis data, we reconstructed these key hydrological variables with high accuracy (most NSEs > 0.8).
DOI: 10.15468/dl.djg265
title: Occurrence Download

description: A dataset containing 674308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Cygnus atratus (Latham, 1790)"
 ]
}

 The dataset includes 674308 records from 527 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000833-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18300060
title: TABLE 2 in Notes on the genus Asiosilis Wittmer, 1977 (Coleoptera, Cantharidae, Silinae) in northern Borneo

description: TABLE 2. Number of specimens of Asiosilis spp. collected by month. The abbreviations are the same as those in Table 1.
MonthMULKIAMAHSAKPOLBABKINJanuary412February322343March1032153April6321May342223June1July3421August3112111September2333October621November141212December2411
description: Published as part of Takahashi, Kazuhiro & Dawood, Mahadimenakbar Mohamed, 2025, Notes on the genus Asiosilis Wittmer, 1977 (Coleoptera, Cantharidae, Silinae) in northern Borneo, pp. 94 in Zootaxa 5737 (1) on page 94, DOI: 10.11646/zootaxa.5737.1.3, http://zenodo.org/record/18021502
DOI: 10.5281/zenodo.18300061
title: TABLE 2 in Notes on the genus Asiosilis Wittmer, 1977 (Coleoptera, Cantharidae, Silinae) in northern Borneo

description: TABLE 2. Number of specimens of Asiosilis spp. collected by month. The abbreviations are the same as those in Table 1.
MonthMULKIAMAHSAKPOLBABKINJanuary412February322343March1032153April6321May342223June1July3421August3112111September2333October621November141212December2411
description: Published as part of Takahashi, Kazuhiro & Dawood, Mahadimenakbar Mohamed, 2025, Notes on the genus Asiosilis Wittmer, 1977 (Coleoptera, Cantharidae, Silinae) in northern Borneo, pp. 94 in Zootaxa 5737 (1) on page 94, DOI: 10.11646/zootaxa.5737.1.3, http://zenodo.org/record/18021502
DOI: 10.5281/zenodo.18300232
title: Primulaceae Batsch ex Borkh. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.5281/zenodo.18300231
title: Primulaceae Batsch ex Borkh. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.5281/zenodo.18299504
title: Dataset: Diagnostic accuracy study of the multiplex Truenat MTB Ultima/COVID-19 assay for simultaneous detection of Tuberculosis and SARS-CoV2 (COVID-19)

description: This dataset encompasses all relevant data for the publication "Diagnostic accuracy study of the multiplex Truenat MTB Ultima/COVID-19 assay for simultaneous detection of Tuberculosis and SARS-CoV2 (COVID-19)" by Hafsah Tootla et al., published on MedRxivs on 11 January 2026.

doi: https://doi.org/10.64898/2026.01.08.26343747
DOI: 10.15468/dl.7x6tej
title: Occurrence Download

description: A dataset containing 1552238 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dactylis glomerata"
 ]
}

 The dataset includes 1552238 records from 5039 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020332-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j2ska9
title: Occurrence Download

description: A dataset containing 7311366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-1.57264 51.06389,0.80955 51.06389,0.80955 52.52041,-1.57264 52.52041,-1.57264 51.06389))",
 "PublishingCountry is United Kingdom of Great Britain and Northern Ireland",
 "Year 2020-2025"
 ]
}

 The dataset includes 7311366 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046208-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8m9g2v
title: Occurrence Download

description: A dataset containing 28592 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Geometry POLYGON((-127.15792 29.42462,-48.63441 29.42462,-48.63441 50.49483,-127.15792 50.49483,-127.15792 29.42462))",
 "TaxonKey is Ficaria verna"
 ]
}

 The dataset includes 28592 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046240-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdjtua
title: Occurrence Download

description: A dataset listing the 17 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "LifeStage is one of (Egg, Larva)",
 "MediaType is Image",
 "TaxonKey is Nymphalidae",
 "Year 2000-2025"
 ]
}

 The dataset's 17 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046217-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fw64p8
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-114.2688 30.14913, -114.1188 30.14913, -114.1188 30.29913, -114.2688 30.29913, -114.2688 30.14913))"
 ]
}

 The dataset includes 49 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046241-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gg4kn4
title: Occurrence Download

description: A dataset containing 931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Poland",
 "OccurrenceStatus is Present",
 "TaxonKey is Mustela nivalis"
 ]
}

 The dataset includes 931 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046242-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ycnv8m
title: Occurrence Download

description: A dataset containing 119708 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euplagia quadripunctaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 119708 records from 1305 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046175-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znv5zd
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-114.1188 30.14913, -113.9688 30.14913, -113.9688 30.29913, -114.1188 30.29913, -114.1188 30.14913))"
 ]
}

 The dataset includes 28 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046244-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.paj7xr
title: Occurrence Download

description: A dataset listing the 10 species recorded in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is one of (2e4af590-37d0-11d9-8439-b8a03c50a862, b4640710-8e03-11d8-b956-b8a03c50a862, 29164bbc-5488-43de-9ad2-f79d48f2aa59, 0dc9c7a0-b5c6-11d9-a0b8-b8a03c50a862, 2cd829bb-b713-433d-99cf-64bef11e5b3e, 311e2740-f15a-11d8-b22f-b8a03c50a862, 8483a1f0-1032-11db-ae00-b8a03c50a862, b62390e0-0e35-11d9-8431-b8a03c50a862, bc092ff0-02e4-11dc-991f-b8a03c50a862, a41250f0-7c3e-11d8-a19c-b8a03c50a862, 19456090-b49a-11d8-abeb-b8a03c50a862, b554c320-0560-11d8-b851-b8a03c50a862, 2e167bb0-4441-11db-9ba2-b8a03c50a862, f3dbc938-e326-477e-8e90-ac82035b35ec)",
 "TaxonKey is Homalodotheriidae"
 ]
}

 The dataset's 10 records were derived from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046234-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13796915
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.17620038
title: Data for "Identifying statistical indicators of temporal asymmetry using a data-driven approach"

description: This dataset contains the raw and processed data used for the analyses presented in Identifying statistical indicators of temporal asymmetry using a data-driven approach.
DOI: 10.5281/zenodo.17620039
title: Data for "Identifying statistical indicators of temporal asymmetry using a data-driven approach"

description: This dataset contains the raw and processed data used for the analyses presented in Identifying statistical indicators of temporal asymmetry using a data-driven approach.
DOI: 10.5281/zenodo.17645274
title: Founding the Science of Inverse Chemistry: A Unified Conceptual Framework for Property-to-Structure Mapping

description: This conceptual paper establishes the foundational principles of Inverse Chemistry, a novel interdisciplinary field that addresses the inverse problems in chemical sciences by mapping desired properties back to molecular structures and compositions. Unlike traditional approaches that treat materials science, drug discovery, and protein engineering as separate domains, we posit a unified science of inverse mapping. Drawing upon advanced computational methodologies, we delineate a multi-dimensional approach encompassing Bayesian inference, detailed sensitivity analysis via Sobol indices, and genetic optimization. The framework is supported by precise mathematical derivations, reproducible simulations, and Python code implementations. High-fidelity TikZ visualizations, including detailed algorithmic flowcharts, illustrate the complex processes. This work integrates insights from diverse peer-reviewed sources to provide a robust, evidence-based foundation for future empirical validations and cross-disciplinary innovation.