cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15496601
title: Data used in SeuratIntegrate paper

description: This repository gathers the data and code used to generate hepatocellular carcinoma analyses in the paper presenting SeuratIntegrate. It contains the scripts to reproduce the figures presented in the article. Some figures are also available as pdf files.To be able to fully reproduce the results from the paper, one shoud:



download all the files

install R 4.3.3, with correspondig base R packages (stats, graphics, grDevices, utils, datasets, methods and base)

install R packages listed in the file sessionInfo.txt

install the provided version of SeuratIntegrate. In an R session, run:


remotes::install_local("path/to/SeuratIntegrate_0.4.1.tar.gz")



install (mini)conda if necessary (we used miniconda version 23.11.0)

install the conda environments (if it fails with the *package-list.yml files, use the *package-list-from-history.yml files instead):


conda env create --file SeuratIntegrate_bbknn_package-list.yml
conda env create --file SeuratIntegrate_scanorama_package-list.ymlconda env create --file SeuratIntegrate_scvi-tools_package-list.ymlconda env create --file SeuratIntegrate_trvae_package-list.yml



open an R session to make the conda environments usable by SeuratIntegrate:


library(SeuratIntegrate)

UpdateEnvCache("bbknn", conda.env = "SeuratIntegrate_bbknn", conda.env.is.path = FALSE)
UpdateEnvCache("scanorama", conda.env = "SeuratIntegrate_scanorama", conda.env.is.path = FALSE)UpdateEnvCache("scvi", conda.env = "SeuratIntegrate_scvi-tools", conda.env.is.path = FALSE)UpdateEnvCache("trvae", conda.env = "SeuratIntegrate_trvae", conda.env.is.path = FALSE)

 

Once done, running the code in integrate.R should produce reproducible results. Note that lines 3 to 6 from integrate.R should be adapted to the user's setup.integrate.R is subdivided into six main parts:



Preparation: lines 1-56

Preprocessing: lines 58-74

Integration: lines 76-121

Processing of integration outputs: lines 126-267

Scoring of integration outputs: lines 269-353

Plotting: lines 380-507


Intermediate SeuratObjects have been saved between steps 3 and 4 and 5 and 6 (liver10k_integrated_object.RDS and liver10k_integrated_scored_object.RDS respectively). It is possible to start with these intermediate SeuratObjects to avoid the preceding steps, given that the Preparation step is always run before.
DOI: 10.15468/dl.v2eutf
title: Occurrence Download

description: A dataset containing 8 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'RU'
 AND (occurrence.level0gid = 'RUS.66_1' OR occurrence.level1gid = 'RUS.66_1' OR occurrence.level2gid = 'RUS.66_1' OR occurrence.level3gid = 'RUS.66_1')
 AND occurrence.hascoordinate = TRUE
 AND occurrence.hasgeospatialissues = FALSE
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.taxonkey = 2943190 OR occurrence.acceptedtaxonkey = 2943190 OR occurrence.kingdomkey = 2943190 OR occurrence.phylumkey = 2943190 OR occurrence.classkey = 2943190 OR occurrence.orderkey = 2943190 OR occurrence.familykey = 2943190 OR occurrence.genuskey = 2943190 OR occurrence.specieskey = 2943190)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 8 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015675-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15497141
title: Monthly global net phytoplankton production and phytoplankton absorbed energy derived from the CAFE model

description: Version 1.0.0 contains a netcdf file of CAFE model outputs (net primary production, phytoplankton absorbed energy aka QPAR) from monthly SeaWiFS and MODIS Aqua data. This is a global product that spans October 1998-December 2022. This product used R2022 Level 3 NASA data.  Details on the CAFE model can be found at DOI: 10.1002/2016GB005521

Version 2.0 are functions used in the manuscript 'Global declines in net primary production in the ocean color era.
DOI: 10.5281/zenodo.12586955
title: Monthly global net phytoplankton production and phytoplankton absorbed energy derived from the CAFE model

description: Version 1.0.0 contains a netcdf file of CAFE model outputs (net primary production, phytoplankton absorbed energy aka QPAR) from monthly SeaWiFS and MODIS Aqua data. This is a global product that spans October 1998-December 2022. This product used R2022 Level 3 NASA data.  Details on the CAFE model can be found at DOI: 10.1002/2016GB005521

Version 2.0 are functions used in the manuscript 'Global declines in net primary production in the ocean color era.
DOI: 10.15468/dl.htceag
title: Occurrence Download

description: A dataset containing 125188378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 125188378 records from 2840 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015666-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7vvvw
title: Occurrence Download

description: A dataset containing 49332822 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((3.21302 43.45585,2.89345 42.81395,3.07769 41.96063,0.76984 40.99095,-0.44226 39.50733,-0.13742 38.78336,-1.29361 37.95134,-2.02839 36.98965,-3.36827 36.94643,-5.51857 36.57904,-5.60501 36.3089,-5.22682 35.15271,-1.74744 34.89338,-0.01856 35.64977,1.19166 36.38454,4.8115 36.78434,5.27614 36.51421,9.87154 36.8085,10.52608 35.49942,9.60661 33.51026,19.35329 29.90143,20.40468 30.78233,21.37083 32.45887,25.46273 31.20856,29.09997 30.555,34.32851 30.78233,37.22694 36.74968,36.03347 37.00542,28.81581 37.1475,27.39014 37.77132,26.92903 39.88179,31.99397 40.96478,33.16893 41.74109,34.84743 41.74109,37.76816 40.74903,41.46223 40.80586,42.20105 42.22666,39.75707 43.92315,37.55403 45.01418,38.87585 46.16816,39.64361 47.42678,33.59101 46.77322,30.80493 46.9226,28.02016 45.38813,27.25293 41.89297,27.31085 40.92957,25.0591 41.2298,23.14511 40.90455,22.48366 40.55132,22.59271 39.25028,20.69226 39.16264,20.33814 39.69728,19.56048 40.32913,19.7227 41.9498,17.46009 43.24687,16.93451 43.54022,16.29892 43.91913,15.13775 44.61583,14.91774 45.1903,13.82991 45.86256,12.03315 45.74033,12.1676 44.26137,13.45011 43.46525,13.71224 42.97122,14.04496 42.43687,15.55438 41.50268,17.16752 40.89776,16.25005 39.69798,14.86879 40.73644,13.21822 41.5194,11.74623 42.33605,10.83883 43.00147,10.44563 43.86854,9.03829 44.73457,6.56854 43.36667,5.92855 43.20182,5.28856 43.55091,4.18312 43.71575,3.21302 43.45585))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 49332822 records from 5740 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015116-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/d3m-jkh-hax
title: Actephila Blume

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yg6-vbz-pey
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0dt-jrz-65a
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dre-fz4-byz
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y8h-710-91c
title: Cupuladria Canu & Bassler, 1919

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yw5-mch-wsz
title: Entalophora Lamouroux, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/311-90g-tf3
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/svq-dlm-txx
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bz0-hpc-aav
title: †Belemnitida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/248-p5e-rf1
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v03-hsa-mes
title: Margaretta Gray, 1843

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7ev-2f5-gds
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w74-zs0-56c
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gvk-9cs-n99
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vg7-tla-g9q
title: Poricellaria d'Orbigny, 1854

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/anf-hya-7l1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/csg-3s6-1qq
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nsh-jkf-ckr
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s4t-ee2-zxy
title: Haplopoma bimucronatum (Moll, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sw4-lvc-4bn
title: Lithoglyphus naticoides (C. Pfeiffer, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a4z-9l5-d8l
title: Ostrea Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lq1-sq8-tl7
title: Biflustra tenuis (Desor, 1848)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dr6-tz5-c32
title: Yoldia Møller, 1842

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pzh-2lt-fh4
title: Aeverrillia Marcus, 1941

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fb1-4q3-a5s
title: Gen. indet. sp. indet.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qkn-p3s-lj1
title: Gen. indet. sp. indet.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j59-km8-jnf
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n0r-8nv-kvj
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/382-05m-1ak
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yak-raw-451
title: Entalophora Lamouroux, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jyd-yz0-tmr
title: Aegocrioceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m65-wd3-2my
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m2q-hgq-kt3
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e0m-4sw-a6j
title: Hippoporina Neviani, 1895

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fck-hg1-tbc
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q46-1gf-stk
title: Cupuladria biporosa (Canu & Bassler, 1923)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tqv-e1m-jtr
title: Cupuladria Canu & Bassler, 1919

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a93-w34-6fa
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e8h-91x-rwr
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.s9q46d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balanus tintinnabulum",
 "Country is Malta",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013751-250811113504898/datasets/export for details.
DOI: 10.3535/cpv-ts8-rj7
title: Pasythea Lamouroux, 1812

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nz2-k4n-tgy
title: Cupuladria Canu & Bassler, 1919

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g1k-dd3-9zd
title: Cupuladria canariensis (Busk, 1859)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t36-8sr-sf2
title: Nellia tenella (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5b3-a7a-was
title: Trypostega venusta (Norman, 1864)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a66-dva-clc
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bch-xgx-d6t
title: Quercus L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/402-d7b-c8q
title: †Monsella eocena (Meunier & Pergens, 1886)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r20-508-pvh
title: Quercus L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e78-wa2-qpb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l97-r0d-7x4
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qnd-ssp-q4q
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ztw-781-7pq
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/63v-0n9-n18
title: Simbirskites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sgv-rnw-x7j
title: Floridina antiqua (Smitt, 1873)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hxk-64l-52j
title: Jellyella tuberculata (Bosc, 1802)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wvf-wl0-g0q
title: Apodemus sylvaticus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fhe-2y2-gxz
title: Nellia tenella (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gsq-fx5-fkb
title: Poricellaria d'Orbigny, 1854

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v6f-7zh-xn6
title: Pasythea Lamouroux, 1812

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/086-y3f-afn
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zxv-0wk-c9r
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3t0-gdv-k80
title: Nellia tenella (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z2v-1xx-tal
title: Sesarma Say, 1817

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/05p-d4y-63l
title: Myomimus Ognev, 1924

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kbs-caf-2f3
title: Gen. indet. sp. indet.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0gs-6t4-4rh
title: Apodemus sylvaticus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4b5-qmk-ycc
title: Aegocrioceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7hc-g3x-86l
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h8n-14d-2qt
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kyt-s75-pn1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/prs-3dv-mgd
title: Simbirskites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hn5-4e3-8x5
title: Thalamoporella rozieri (Audouin, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jhb-dpe-nva
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8rz-ypy-nkc
title: Biflustra d'Orbigny, 1852

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mtm-fjw-hyj
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n45-01v-48y
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zna-pcz-qmd
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gjc-m72-wrj
title: Discoporella umbellata (Defrance, 1823)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g6f-w1s-9b1
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s5k-1zc-c9y
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5kj-zlk-r43
title: Poaceae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ewb-x88-gsm
title: Parasmittina Osburn, 1952

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3r8-jvh-sey
title: Simbirskites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5zh-zey-lpt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8vq-c4m-78j
title: Flustra foliacea (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.7w92ky
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balanus tintinnabulum",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013750-250811113504898/datasets/export for details.
DOI: 10.3535/ph1-fjs-h03
title: Cellaria Ellis & Solander, 1786

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vaq-l36-set
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.st3wxf
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balanus tintinnabulum",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013749-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/dpk-fg2-090
title: †Beania bermudezi Lagaaij, 1968

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q7y-tlk-nz3
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3jj-zkc-mat
title: Adeonella calveti Canu & Bassler, 1930

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qa9-vnt-e56
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/na7-8rn-ac8
title: Thalamoporella Hincks, 1887

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pyw-eq3-qss
title: Soricomorpha Gregory, 1910

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xq1-7l6-db5
title: Sorex Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.