cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/fcnx4fdpcc.1
title: RNA-Puzzles Round V: Models from LCBio group

description: This dataset comprises the three-dimensional RNA structure models submitted by the LCBio group for the RNA-Puzzles Round V blind prediction challenge. The collection includes computational predictions for seven distinct RNA targets: PZ30, PZ31, PZ32, PZ33, PZ34, PZ35, and PZ36.

The models were generated using the LCBio group's pipeline, which combines consensus secondary structure prediction with coarse-grained 3D modeling and refinement. The LCBio approach focuses on:
 - Secondary Structure Prediction: A consensus secondary structure was derived using multiple methods (ViennaRNA, RNAStructure, ProbKnot, CentroidFold, ContraFold, IPknot) and homologous sequence information from Rfam and RNAcentral.
 - 3D Modeling: The SimRNA program was used for 3D structure modeling via replica-exchange Monte Carlo simulations, performed both with and without secondary structure restraints.
 - Refinement: The lowest-energy coarse-grained models were selected and refined using the QRNAs program to reconstruct all-atom details and mitigate modeling errors.
 - Homology Modeling: For specific targets like PZ30, homology modeling was employed based on identified structural homologs.

Each model reflects the group's methodology in predicting tertiary structures from primary sequences, contributing to the community-wide effort to improve RNA structure prediction accuracy. These submissions were part of the RNA-Puzzles Round V assessment, a blind challenge where participants predict structures before the experimental results are released. This dataset provides a valuable resource for researchers interested in benchmarking RNA folding software, analyzing prediction performance, or studying the structural characteristics of the specific targets involved in this round of the challenge.
DOI: 10.5281/zenodo.18678435
title: Ciona+Copepod_GABA/Glutamate in Threat response
DOI: 10.5281/zenodo.18678434
title: Ciona+Copepod_GABA/Glutamate in Threat response
DOI: 10.17632/sb88bc8pf7
title: A Novel Multifunctional VPA@ZIF-8 Nanocomposite Promotes Reparative Dentinogenesis in Pulpitis

description: In pulpitis treatment, vital pulp therapy (VPT) aims to preserve pulp vitality and promote dentin regeneration, yet conventional capping materials often lack reparative dentin inducing activity and fail to regulate local immune responses. In this study, valproic acid (VPA)-loaded zeolitic imidazolate framework-8 (ZIF-8) nanocomposites (VPA@ ZIF-8 NPs) were developed to provide sustained therapeutic VPA release along with antibacterial and immunomodulation effects. Using a VPA-equivalent (VPA-eq) dosing strategy, we evaluated its antimicrobial, immunomodulatory, and reparative dentin inducing activity across multiple methods. In vitro studies showed that when treated with VPA@ZIF-8 NPs, stem cells from human exfoliated deciduous teeth (SHEDs) exhibited enhanced proliferation, migration, and mineralization ability, oral opportunistic pathogen V. parvula showed suppressed growth and biofilm formation activity, Further, macrophage polarization assays revealed that VPA@ZIF-8 NPs promoted the M2 polarization in THP-1 cells, indicated an anti-inflammatory function. Mechanistically, the classical odontogenic BMP2/SMAD1/RUNX2 pathway was activated by VPA@ZIF-8 NPs along with DSPP up-regulation in SHEDs. In vivo, local VPA@ZIF-8 NPs application recapitulated the macrophage M2 polarization and BMP2/SMAD1/RUNX2 pathway activation phenotype and contributed to marked reparative dentin bridge formation in an acute pulpitis rat model. In conclusion, this study demonstrated that the multifunctional VPA@ZIF-8 NPs integrated antibacterial, immunomodulatory, and regenerative induction effects, offering a novel and integrated therapeutic strategy for pulpitis.
DOI: 10.17632/sb88bc8pf7.1
title: A Novel Multifunctional VPA@ZIF-8 Nanocomposite Promotes Reparative Dentinogenesis in Pulpitis

description: In pulpitis treatment, vital pulp therapy (VPT) aims to preserve pulp vitality and promote dentin regeneration, yet conventional capping materials often lack reparative dentin inducing activity and fail to regulate local immune responses. In this study, valproic acid (VPA)-loaded zeolitic imidazolate framework-8 (ZIF-8) nanocomposites (VPA@ ZIF-8 NPs) were developed to provide sustained therapeutic VPA release along with antibacterial and immunomodulation effects. Using a VPA-equivalent (VPA-eq) dosing strategy, we evaluated its antimicrobial, immunomodulatory, and reparative dentin inducing activity across multiple methods. In vitro studies showed that when treated with VPA@ZIF-8 NPs, stem cells from human exfoliated deciduous teeth (SHEDs) exhibited enhanced proliferation, migration, and mineralization ability, oral opportunistic pathogen V. parvula showed suppressed growth and biofilm formation activity, Further, macrophage polarization assays revealed that VPA@ZIF-8 NPs promoted the M2 polarization in THP-1 cells, indicated an anti-inflammatory function. Mechanistically, the classical odontogenic BMP2/SMAD1/RUNX2 pathway was activated by VPA@ZIF-8 NPs along with DSPP up-regulation in SHEDs. In vivo, local VPA@ZIF-8 NPs application recapitulated the macrophage M2 polarization and BMP2/SMAD1/RUNX2 pathway activation phenotype and contributed to marked reparative dentin bridge formation in an acute pulpitis rat model. In conclusion, this study demonstrated that the multifunctional VPA@ZIF-8 NPs integrated antibacterial, immunomodulatory, and regenerative induction effects, offering a novel and integrated therapeutic strategy for pulpitis.
DOI: 10.17632/3mbnb82mxd
title: Tomato Leaf Disease Classification Dataset in Pakistan

description: This dataset comprises 7,200 images of tomato leaves collected from real-time agricultural field conditions in Pakistan. The images were captured using a smartphone camera under natural lighting, without controlled backgrounds, to reflect realistic field environments. The dataset includes six classes: Early Blight, Late Blight, Septoria Leaf Spot, Leaf Mold, Yellow Leaf Curl Virus, and Healthy leaves. All images are stored in JPG format with consistent resolution and were manually labeled based on visible disease symptoms. The dataset is intended to support research and development in machine learning, deep learning, and computer vision, particularly for tomato leaf disease detection and precision agriculture applications under real-world conditions.
DOI: 10.17632/3mbnb82mxd.2
title: Tomato Leaf Disease Classification Dataset in Pakistan

description: This dataset comprises 7,200 images of tomato leaves collected from real-time agricultural field conditions in Pakistan. The images were captured using a smartphone camera under natural lighting, without controlled backgrounds, to reflect realistic field environments. The dataset includes six classes: Early Blight, Late Blight, Septoria Leaf Spot, Leaf Mold, Yellow Leaf Curl Virus, and Healthy leaves. All images are stored in JPG format with consistent resolution and were manually labeled based on visible disease symptoms. The dataset is intended to support research and development in machine learning, deep learning, and computer vision, particularly for tomato leaf disease detection and precision agriculture applications under real-world conditions.
DOI: 10.17632/mpfcxbp839
title: Proteomics-Gumanova

description: Serum Proteom in patients with Coronary Stenosis according to coronary angiography
DOI: 10.17632/mpfcxbp839.1
title: Proteomics-Gumanova

description: Serum Proteom in patients with Coronary Stenosis according to coronary angiography
DOI: 10.17632/fptp44fvjv
title: PQIR

description: The code and data of PQIR
DOI: 10.17632/fptp44fvjv.2
title: PQIR

description: The code and data of PQIR
DOI: 10.17632/ts6547j6sc
title: BanglaVoice(Active, Passive, Middle)

description: The BanglaVoice dataset contains 4,397 unique Bangla sentences annotated for grammatical voice classification, including 1,531 Passive, 1,459 Active, and 1,407 Middle constructions. The sentences were manually collected and carefully verified to ensure accurate labeling. Each entry includes a cleaned Bangla sentence and its corresponding voice category, with optional English translations where available. Duplicate and incomplete entries have been removed to maintain data quality and consistency.
Basic statistical analysis indicates structural differences across voice types. Passive sentences are generally longer, with an average length of 28.48 characters and 4.89 words, compared to 21.11 characters and 3.84 words for Active sentences and 22.42 characters and 4.04 words for Middle sentences. The dataset is suitable for Bangla grammatical analysis, voice classification research, morphological studies, and machine learning applications in Natural Language Processing.

-------Value of the Data-------
1. One of the first structured sentence-level datasets for Bangla grammatical voice classification.
2.Enables research in Bangla morpho-syntactic analysis, voice detection, and grammatical transformation modeling.
3. Supports machine learning benchmarking for text classification in an under-resourced language.
4. Provides balanced class distribution suitable for unbiased model evaluation.
DOI: 10.17632/ts6547j6sc.1
title: BanglaVoice(Active, Passive, Middle)

description: The BanglaVoice dataset contains 4,397 unique Bangla sentences annotated for grammatical voice classification, including 1,531 Passive, 1,459 Active, and 1,407 Middle constructions. The sentences were manually collected and carefully verified to ensure accurate labeling. Each entry includes a cleaned Bangla sentence and its corresponding voice category, with optional English translations where available. Duplicate and incomplete entries have been removed to maintain data quality and consistency.
Basic statistical analysis indicates structural differences across voice types. Passive sentences are generally longer, with an average length of 28.48 characters and 4.89 words, compared to 21.11 characters and 3.84 words for Active sentences and 22.42 characters and 4.04 words for Middle sentences. The dataset is suitable for Bangla grammatical analysis, voice classification research, morphological studies, and machine learning applications in Natural Language Processing.

-------Value of the Data-------
1. One of the first structured sentence-level datasets for Bangla grammatical voice classification.
2.Enables research in Bangla morpho-syntactic analysis, voice detection, and grammatical transformation modeling.
3. Supports machine learning benchmarking for text classification in an under-resourced language.
4. Provides balanced class distribution suitable for unbiased model evaluation.
DOI: 10.15468/dl.7ee8tn
title: Occurrence Download

description: A dataset containing 116734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Andromeda polifolia",
 "Year 1980-2026"
 ]
}

 The dataset includes 116734 records from 346 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026917-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d6hb4u
title: Occurrence Download

description: A dataset containing 51734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paratanytarsus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 51734 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026948-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/x3bsn62g3c.1
title: Microbial oxidation and carbonate cementation led to three-dimensional preservation of ichthyosaur bones

description: This dataset contains the final and editable figures, tables, spreadsheet datasets, and raw image data used in the final publication and supplementary information of 'Microbial oxidation and carbonate cementation led to three-dimensional preservation of ichthyosaur bones' by Jian et al. (2026).
CT Models contains .tif files of the 3D CT-segmented bones within concretion used in Figure 1. The raw CT scan files and 3D model files cannot be shared due to privacy concerns.
Figures SVG Versions contains .svg format of main Figures 1 to 4 and Supplementary Information Figures 1 to 8.
Main Figures and Supplementary Figures - Final Versions contains .pdf and .tif versions of main Figures 1 to 5 and .pdf and .png versions of and Supplementary Information Figures 1 to 8.
Rock Eval and Stable Isotopes Data contains Excel spreadsheets of the Tables used in the main manuscript and the Rock Eval and Stable Isotopes Dataset used to generate scatter chart figures.
SEM Images and EDS Data contains .tif images of SEM micrographs used in the main manuscript and EDS reports of each respective site in .docx format.
Specimen Photos contains the .png and .jpg images of the fossil specimen and each sampled component.
Thin Section Micrographs contains .jpg format images of petrographic micrographs of bone and concretion sample thin sections.
DOI: 10.15468/dl.edwfpk
title: Occurrence Download

description: A dataset containing 43 records in GBIF matching the query:
SELECT
 scientificname,
 specieskey,
 establishmentmeans,
 MIN("year") earliest_year,
 MAX(individualcount) max_count,
 COUNT(DISTINCT "year") years_with_records
FROM
 occurrence
WHERE
 occurrence.countrycode = 'GR'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND GBIF_STRINGARRAYCONTAINS(occurrence.establishmentmeans.lineage, 'introduced', FALSE)
 AND occurrence.individualcount &gt;= 1
GROUP BY
 occurrence.scientificname,
 occurrence.specieskey,
 occurrence.establishmentmeans

 The dataset's 43 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026963-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23636/jvpe-2873
title: Brexit - Collection Seed List

description: The Brexit - Collection Seed List dataset is derived from the web archive collection “Brexit”. The UK Web Archive collection is described at https://www.webarchive.org.uk/en/ukwa/collection/910. This data was extracted in October 2023 from the collection’s list of target records stored in the W3 Annotation Curation Tool (ACT), the curation software used to manage the metadata associated with archiving websites. The Brexit - Collection Seed List contains four documents: Brexit - Collection Seed List CSV Brexit - Collection Seed List JSON Datasheet for Brexit - Collection Seed List Data Dictionary for Brexit - Collection Seed List
description: London, UK
DOI: 10.15468/dl.3742yg
title: Occurrence Download

description: A dataset containing 2367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-94.57546 -3.53046,-87.12107 -3.53046,-87.12107 3.04897,-94.57546 3.04897,-94.57546 -3.53046))",
 "HasGeospatialIssue is false",
 "TaxonKey is Carcharhiniformes"
 ]
}

 The dataset includes 2367 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026983-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/akrm-1j50
title: "EDGE-BATT: Battery Depletion and System Telemetry Dataset for Edge Devices"

description: "The EDGE-BATT dataset provides system-level telemetry and battery voltage measurements collected from four resource-constrained microcontroller platforms: ESP32 DevKit, ESP32-C3, Arduino Nano 33 BLE, and Raspberry Pi Pico. Data were recorded under controlled operational and stress conditions designed to capture battery depletion behavior and device-level response without packet payload inspection. The ESP32 dataset includes communication and workload metrics such as BLE connection attempts, signal strength, CPU cycles, and latency, while the remaining platforms focus on voltage evolution and normalized voltage variation features. All measurements were logged at fixed sampling intervals during battery-powered operation. This dataset supports research in packet-agnostic anomaly detection, energy depletion attack modeling, TinyML benchmarking, and resource-aware intrusion detection on extreme edge devices. It enables reproducible evaluation of lightweight machine learning models directly on microcontroller-class hardware."
DOI: 10.5281/zenodo.18679373
title: Dataset for Evaluations of Community Stability Microbiome Model

description: This file contains a copy of microbeatlas data, aswell as data pertaining to other tasks that are used to evaluate the stability microbiome model. The github repo can be found here: https://github.com/the-puzzler/microbiome-model with further information.
DOI: 10.5281/zenodo.18679436
title: Daten des Übersterblichkeitsberichts

description: Im Datensatz "Daten des Übersterblichkeitsberichts" des Robert Koch-Instituts werden wöchentliche Daten zur Übersterblichkeit in Deutschland bereitgestellt. Der Datensatz enthält Angaben zum Wochendatum und zur jeweiligen Gruppe (z. B. Altersgruppen, Geschlecht oder Region). Für jede Gruppe wird die beobachtete Sterbefallzahl den modellbasiert erwarteten Sterbefallzahlen gegenübergestellt.

Zur Bewertung von Abweichungen zwischen beobachteter und erwarteter Sterbefallzahl wird der z-Score berechnet, der zur Einordnung einer etwaigen Übersterblichkeit genutzt wird.

Der Datensatz dient der kontinuierlichen Überwachung von Sterbefallzahlen in Deutschland und ermöglicht die frühzeitige Erkennung von ungewöhnlich hohen Sterbefallzahlen in den betrachteten Gruppen.
DOI: 10.5281/zenodo.18679155
title: Barriers to proper dog bite case management and dog rabies vaccination in Soroti District, Uganda

description: This dataset comprises findings from interviews and discussions conducted with community members who either owned a dog or belonged to households that owned one. Key informants included stakeholders with relevant experience, expertise, and influence in dog bite case management and dog vaccination. The study was carried out in a rural district and provides insights into the perspectives of residents living in both peri-urban (rural–urban) and fully rural areas.
DOI: 10.5281/zenodo.18679156
title: Barriers to proper dog bite case management and dog rabies vaccination in Soroti District, Uganda

description: This dataset comprises findings from interviews and discussions conducted with community members who either owned a dog or belonged to households that owned one. Key informants included stakeholders with relevant experience, expertise, and influence in dog bite case management and dog vaccination. The study was carried out in a rural district and provides insights into the perspectives of residents living in both peri-urban (rural–urban) and fully rural areas.
DOI: 10.48510/fk2/hr9e4k
title: HIV Medication Adherence among People Living with HIV in Latvia

description: The goal of the study was to assess adherence to antiretroviral therapy among people living with HIV (PLWHIV) in Latvia, as well as to explore barriers and facilitators to adherence from both patients’ and experts’ perspectives. Data were collected from 27 November 2024 to 21 August 2025 through a mixed-methods design. The quantitative part consisted of 375 questionnaires, of which 372 were valid after excluding respondents not meeting inclusion criteria or with missing adherence data, collected from 27 November 2024 to 27 June 2025. The questionnaire included questions on demographic information, adherence measured with the Simplified Medication Adherence Questionnaire (SMAQ), and self-reported reasons for missed doses. The questionnaire also included items on tuberculosis, designed for another study. The qualitative part included 20 semi-structured interviews with PLWHIV about their experiences with HIV, challenges, and strategies related to adherence, and 12 interviews with doctors and experts regarding adherence and their professional experience in the HIV field, collected from 17 April 2025 to 21 August 2025. The study was funded by the National Research Program “Public Health 2023–2025” under the project “New Knowledge and Approaches to Reduce Antimicrobial Resistance, Limit the Spread of HIV, and Expand Community Vaccination Coverage” (VPP-VM-Sabiedrības_Veselība-2023/5-0001).
description: MS Excel, 1808
DOI: 10.18112/openneuro.ds007437.v1.0.0
title: Hippo dataset
DOI: 10.34847/nkl.dd7d3jem
title: En-Mig_StoryMap-Véronique

description: Parcours de Véronique.
Cette carte narrative s'inscrit dans le projet En-Mig, Enfants en décolonisation : migrations contraintes et construction individuelle (France, 1945-1980), financé par l'ANR 2021. En-Mig s'est particulièrement intéressé aux enfants métis d'Indochine et leur parcours de vie.
DOI: 10.5283/epub.78600
title: Data archive of Inhibition of (interstitial) P2Y<sub>6</sub> receptors attenuates fibrosis progression

description: Chronic kidney disease (CKD) affects over 850 million people worldwide and is characterized by progressive renal fibrosis driven by activated interstitial fibroblasts. Signaling by extracellular nucleotides and P2 receptors plays an important role in renal pathophysiology, yet its contribution to fibroblast activation and fibrosis remains poorly understood. Here, we investigated the expression and function of Gq/11-coupled P2Y receptors in renal interstitial
fibroblasts and their involvement in experimental kidney fibrosis. Using highly selective RNA in situ hybridization, we detected P2Y1 (P2ry1) and P2Y6 (P2ry6)
receptor expression in interstitial fibroblasts. Notably, P2Y6 expression was markedly upregulated in several experimental mouse models of renal fibrosis. Functional assays in primary cultured renal fibroblasts confirmed Gq/11-coupled P2Y receptor activity, as evidenced by transient intracellular Ca²⁺ elevations upon nucleotide stimulation. Primary cultured renal
fibroblasts exhibited enhanced migration in response to extracellular uridine diphosphate (UDP). To assess the contribution of interstitial P2Y6 receptors to fibrosis progression, we employed an adenine-induced nephropathy model with or without the selective P2Y6 antagonist MRS2578. Pharmacological inhibition of P2Y6 significantly reduced the mRNA expression of the myofibroblast marker α-smooth muscle actin and collagen I. Collectively, these findings suggest that upregulated P2Y6 receptor signaling promotes the transition of resident interstitial cells into myofibroblasts during renal fibrosis, likely by modulating fibroblast migration. Inhibition of P2Y6 signaling could represent a new strategy for reducing excessive renal fibrosis.
DOI: 10.34847/nkl.99e8q998
title: En-Mig_StoryMap-Pierre

description: Parcours de Pierre.
Cette carte narrative s'inscrit dans le projet En-Mig, Enfants en décolonisation : migrations contraintes et construction individuelle (France, 1945-1980), financé par l'ANR 2021. En-Mig s'est particulièrement intéressé aux enfants métis d'Indochine et leur parcours de vie.