cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/13072820.v1
title: Supplementary Info: "Sediment Connectivity: A Framework for Analyzing Coastal Sediment Transport Pathways"

description: This dataset accompanies the paper entitled, "Sediment Connectivity: A Framework for Analyzing Coastal Sediment Transport Pathways", published in the Journal of Geophysical Research: Earth Surface.<br>Model input files used in this study have been included here as supporting information. Specifically, the Delft3D model input files used to produce Figure 5 are provided here, including the bed sediment configuration for Node 5. Model files for the remaining 24 nodes are identical in every respect except for the initial location of the tracer sediment.<br>These files were then run with Delft3D Version 6.02.08.6712 to produce the results shown in this paper. Details regarding the individual file types can be found in the Delft3D User Manual.
DOI: 10.6084/m9.figshare.12444266.v7
title: wuhan-newyork-study-code-and-data.zip

description: The dataset of LUSIs in our paper:<br><br>Fang et al. Synthesizing location semantics from street view images to improve urban land use classification, Int. J. Geogr. Inf. Sci. (2020)
DOI: 10.6084/m9.figshare.13076387.v3
title: deep-sea anemone genome

description: Genome assembly and annotation files of a new deep-sea anemone species (<i>Paraphelliactis</i> sp.) living at a depth of 3,230 m in the Xisha Trough in the South China Sea. Related article "The genome of a new deep-sea anemone species provides insights into deep-sea adaptation" is being reviewed in Jornal Deep-Sea Research Part I: Oceanographic Research Papers.<br>
DOI: 10.6084/m9.figshare.23528921.v1
title: takeuchiETAL_table-S7_ESM.xlsx from Prophages and plasmids can display opposite trends in the types of accessory genes they carry

description: Mobile genetic elements (MGEs), such as phages and plasmids, often possess accessory genes encoding bacterial functions, facilitating bacterial evolution. Are there rules governing the arsenal of accessory genes MGEs carry? If such rules exist, they might be reflected in the types of accessory genes different MGEs carry. To test this hypothesis, we compare prophages and plasmids with respect to the frequencies at which they carry antibiotic resistance genes (ARGs) and virulence factor genes (VFGs) in the genomes of 21 pathogenic bacterial species using public databases. Our results indicate that prophages tend to carry VFGs more frequently than ARGs in three species, whereas plasmids tend to carry ARGs more frequently than VFGs in nine species, relative to genomic backgrounds. In <i>Escherichia coli</i>, where this prophage-plasmid disparity is detected, prophage-borne VFGs encode a much narrower range of functions than do plasmid-borne VFGs, typically involved in damaging host cells or modulating host immunity. In the species where the above disparity is not detected, ARGs and VFGs are barely found in prophages and plasmids. These results indicate that MGEs can differentiate in the types of accessory genes they carry depending on their infection strategies, suggesting a rule governing horizontal gene transfer mediated by MGEs.
DOI: 10.6084/m9.figshare.3563196.v1
title: Appendix A. Literature sources from which functional trait data for ant species were obtained.

description: Literature sources from which functional trait data for ant species were obtained.
DOI: 10.6084/m9.figshare.5405620.v1
title: The evolutionary history of vertebrate RNA viruses

description: Virus genomesSequence alignmentRooted and unrooted phylogenies
DOI: 10.6084/m9.figshare.7635803.v1
title: QS2_Vicious Worm assessment quizzes (Pre, Post & Follow-up)

description: PowerPoint slides used for the assessment quizzes in the Vicious Worm workshops conducted in the control and negative control study arms (QS2).-'Pre' and 'Post' assessment in late November 2016, immediately before and after the educational component, respectively.-'Follow-up' assessment in early December 2017, one year later.
DOI: 10.6084/m9.figshare.14578362.v1
title: Genome of the ramshorn snail Biomphalaria straminea an important intermediate vector of schistosomiasis

description: <b>Background</b><b></b>Schistosomiasis or bilharzia is a parasitic disease caused by trematode flatworms of the genus <i>Schistosoma</i>. Infection of <i>S</i>.<i> mansoni</i> in humans results when cercariae emerge into the water from freshwater snails in the genus <i>Biomphalaria</i>, and seek out and penetrate human skin. The snail <i>B. straminea</i> is now present at several locations in southern China, and represents a potential reservoir for spreading schistosomiasis. To date, genomic information for the species is only available for the species <i>B. glabrata</i>, which<i> </i>mainly inhabits Central and South America. This hinders understanding of the biology and management of other important schistosomiasis vectors, such as <i>B. straminea</i>.<b>Findings</b><b></b>Using a combination of Illumina short‐read, 10X Genomics linked‐read, and Hi‐C sequencing data, our 1.005 Gbp <i>B. straminea</i> genome assembly is of high physical contiguity, with a scaffold N50 of 25.3 Mbp, and high completeness with 87.0% BUSCO score. Developmental homeobox genes, hormonal genes, and stress-response genes were also identified. Comparisons with other mollusc genomes revealed syntenic conservation, dynamic expansion of heat shock protein genes, and the presence of sesquiterpenoid and cholesterol in certain lineages among mollusc diversity.<b>Conclusion</b><b></b>This study provides the first genome assembly for snail <i>Biomphalaria</i> <i>straminea</i> and provides an unprecedented opportunity to address a variety of evolutionary, genomic, and disease questions relating to molluscs more widely.
DOI: 10.6084/m9.figshare.20464696.v2
title: A sauropod from the Lower Jurassic La Quinta Formation (Dept. Cesar, Colombia) and the initial diversification of eusauropods at low latitudes

description: The northern-most occurrence of Sauropoda in South America was collected in the 1940s from Early–Middle Jurassic-aged continental sediments on the western flank of the Serranía del Perijá in Colombia. Relocation of the site and re-preparation of the specimen, a well-preserved dorsal vertebra, provide important information about the initial diversification of sauropods at low latitudes. The specimen possesses autapomorphies and a unique combination of character states (e.g., divided centropostzygapophyseal lamina, strongly dorsally arched postzygapophyseal facets) that diagnose it as the new genus and species <i>Perijasaurus lapaz</i>. A medium-sized early eusauropod, <i>Perijasaurus</i> inhabited tropical lowland forested areas around the Toarcian–Aalenian boundary. Our phylogenetic analysis recovers <i>Perijasaurus</i> near the base of Eusauropoda, in an unresolved position near <i>Cetiosaurus</i>, <i>Patagosaurus</i> and kin (<i>Bagualia</i>, <i>Spinophorosaurus</i>, <i>Nebulasaurus</i>), and more deeply nested eusauropods. The phylogenetic position of <i>Perijasaurus</i> bolsters the idea that eusauropods achieved a broad geographic distribution during the Early–Middle Jurassic, before the deeper fragmentation of Pangea and after the Toarcian faunal turnover documented at high southern latitudes. <i>Perijasaurus</i> and other basally diverging sauropods display an intermediate level of bone weight reduction in the axial column that represents an antecedent to the more highly developed pneumatic system characterizing Neosauropoda.
DOI: 10.6084/m9.figshare.20740744.v4
title: Supplementary_data_rev

description: Supplementary data.
DOI: 10.6084/m9.figshare.23297771.v1
title: Optic Tract ROIs and reference curves in MNI space Drawn using Yeh atlas: <em>Yeh, FC. Population-based tract-to-region connectome of the human brain and its hierarchical topology. Nat Commun 13, 4933 (2022). https://doi.org/10.1038/s41467-022-32595-4</em>

description: Optic Tract ROIs and reference curves in MNI space for use in tractometry. Still being worked on, may be updated in the future.
DOI: 10.6084/m9.figshare.26212544.v1
title: Deformation microstructures and seismic properties of UHP eclogites: response to strain localization, <i>P–T</i> path and fluid/melt interaction within a paleo-subduction channel

description: These are the original ebsd data for the paper entitled with “Deformation microstructures and seismic properties of UHP eclogites: response to strain localization,<i> </i><i>P–T</i> path and fluid/melt interaction within a paleo-subduction channel”. The CPO results, grain data are all extracted from the original ebsd mapping data.
DOI: 10.6084/m9.figshare.27679044.v1
title: DERMA-PASeg

description: The data repository has a huge utilization in E-Pathology, where instead of needing pathologists to analyse whole slide images, computer-aided diagnosis can be employed to enhance the performance of disease diagnosis. The dataset is composed of 32 Unstained whole slide images paired with chemically stained slides, captured using a brightfield microscope. In addition to that, we have also generated their associated virtually stained images using dual contrastive GANs. To aid in autonomous layer extraction, masks for each whole slide image have also been provided containing annotations for five layers i.e., Dermis, Epidermis, Keratin, Dermal-Epidermal Junction, and background. Following is the detailed hierarchy of the dataset.<br><br>DERMA-Seg (Root Directory)<br> -&gt; Unstained whole slide images - Unstained<br> -&gt; C Stained - Chemically Stained<br> -&gt; V Stained - Virtually Stained<br> -&gt; Masks - Segmented Images
DOI: 10.17632/4v625rp3cj
title: The interface stiffness and topographic feature dictate interfacial invasiveness of cancer spheroids

description: During cancer metastasis, tumor cells likely navigate, in a collective manner, discrete tissue spaces comprising inherently heterogeneous ECM microstructures where interfaces may be frequently encountered. Studies have shown that cell migration modes can be determined by adaptation to mechanical/topographic cues from interfacial microenvironments. However, less attention has been paid to exploring the impact of interfacial mechnochemical attributes on invasive and metastatic behaviors of tumor aggregates. Here, we excogitated a collagen matrix-solid substrate interface platform to investigate the afore-stated interesting issue. Our data revealed that stiffer interfaces stimulated spheroid outgrowth by motivating detachment of single cells and boosting their motility and velocity. However, stronger interfacial adhesive strength between matrix and substrate led to the opposite outcomes. Besides, this interfacial parameter also affected the morphological switch between migration modes of the detached cells and their directionality. Mechanistically, myosin II-mediated cell contraction, compared to MMPs-driven collagen degradation, was shown to play a more crucial role in the invasive outgrowth of tumor spheroids in interfacial microenvironments. Thus, our findings highlight the importance of heterogeneous interfaces in addressing and combating cancer metastasis.
Cell line: MDA-MB-231
Z: microscope plane
T: Time point (T1 to T144, each time point 10 minutes in 24 hours)
The experiment protocol can be found in our paper: https://iopscience.iop.org/article/10.1088/1758-5090/acaa00
DOI: 10.6084/m9.figshare.12670856.v6
title: Eukdetect database genomes only

description: Eukdetect marker and taxonomy databases.
DOI: 10.17632/8x99n3v5m3
title: Topical Ruxolitinib is More Effective at Itch Reduction than Topical Roflumilast in Atopic Dermatitis: A Comparative Meta-Analysis

description: Supplemental figures and data for study titled "Topical Ruxolitinib is More Effective at Itch Reduction than Roflumilast: A Comparative Meta-Analysis".
DOI: 10.17632/bzf9jcvhx4
title: Low Rate DDoS (MQTT)

description: The dataset was utilized to investage the impact of Low Rate DDoS Attack based on MQTT protocol in SD-IoT environment. The data is contained of two subfolder including the extracted training data using OpenFlow features and *.pcap file for generating real-time DDoS attack in SD-IoT.
DOI: 10.17632/wrkvzf567k
title: Early onset preeclampsia and eclampsia in low-resource settings

description: This was a retrospective cross-sectional study carried out at Mpilo Central Hospital a government teaching and tertiary referral centre. It covered the period from February 1, 2016 to July 30, 2018. The aim of the study was to assess the incidence of early-onset severe preeclampsia and eclampsia in a low-resource setting and associated factors. Early-onset severe preeclampsia was diagnosed in those patients with high blood pressure(SBP ≥160, DBP ≥110mmHg) and either severe headaches, epigastric pain and deranged biochemical/haematological blood indices. Eclampsia was diagnosed in women who had a grand mal seizure with features of preeclampsia and no previous history of a seizure disorder such as epilepsy. Women with such history were excluded from the study. All women who were between 20-33+6weeks' of gestation and met the above criteria were included in the study. Early neonatal death was recorded within 7 days of birth. A paper data collection tool was used to collect information from the labour ward delivery registers, perinatal registers and mortality registers. Data were also collected from neonatal intensive care unit and special care baby unit. Hospital case notes were retrieved and data collected from there as well. The data tool collected maternal, fetal and neonatal demographic, clinical and out-come information. Data were entered into Microsoft Excel Inc., then exported to SPSS 20 for analysis. Data cleaning and coding were done in SPSS Version 20 before final analysis. Simple descriptive statistics were performed and presented as frequencies and percentages for categorical variables. Continuous variables were checked for normality using Shapiro Wilk test. Mean and standard deviation(SD) were reported for normal data. Tests of association between variables were performed using Pearson chi-square and Fisher’s exact tests. A p value of &lt;0.05 was considered statistically significant. The incidence of early-onset severe preeclampsia and eclampsia at the unit was 1.0%. There was a statistically significant difference between place of dwelling and maternal complications, with urban dwellers suffering more complications. Tests of association were done between various variables and fetal survival to discharged home showed the following associations; gestational age, mother’s booking status, mother’s systolic blood pressure and diastolic blood pressure, receiving corticosteroid therapy and fetal birth weight.
DOI: 10.6084/m9.figshare.27641982.v5
title: Data from: Responses of subsoil organic carbon to climate warming and cooling is determined by microbial community rather than its molecular composition

description: Little is currently known about how long-term climate changes modulate the relationship between soil organic carbon (SOC) molecular composition, microbial community and SOC storage, and the mechanisms involved. Here, we show substantial changes in subsoil SOC in the Qinghai-Tibetan alpine grasslands over 16 years of soil warming and cooling. Warming reduced SOC content by 8.5%, while cooling increased it by 7.0%. Neither warming nor cooling affected plant- and microbial-derived molecular components. However, warming elevated fungal-to-bacterial biomass ratio (F/B) and gram-positive to gram-negative bacterial biomass ratio (G+/G-) by 15.0% and 8.6%, respectively, whereas cooling reduced them by 4.5% and 9.6%. Warming reduced SOC storage by directly increasing F/B and G+/G- and indirectly decreasing the soil carbon-to-nitrogen ratio, whereas cooling enhanced SOC storage primarily by decreasing F/B. Conventional warming experiments, which consider only climate warming and neglect cooling, may underestimate the negative impacts of warming on subsoil SOC pools in alpine grasslands.
DOI: 10.6084/m9.figshare.28765802.v1
title: Numerical data used to generate figures for the manuscript " Activation of the carotid body by kappa opioid receptors mitigates fentanyl-induced respiratory depression"

description: Previous studies reported that opioids depress breathing by inhibiting respiratory neural networks in the brainstem. The effects of opioids on sensory inputs regulating breathing are less studied. This study examined the effects of fentanyl and sufentanil on carotid body neural activity, a crucial sensory regulator of breathing. Both opioids stimulated carotid body afferent nerve activity and increased glomus cell [Ca<sup>2+</sup>]<sub>i</sub> levels. RNA sequencing and immunohistochemistry revealed a high abundance of κ opioid receptors (KORs) in carotid bodies, but no µ or δ opioid receptors. A KOR agonist, like fentanyl, stimulated carotid body afferents, while a KOR antagonist blocked carotid body activation by fentanyl and KOR agonist. In unanesthetized rats, fentanyl initially stimulated breathing, followed by respiratory depression. A KOR agonist stimulated breathing without respiratory inhibition, and this effect was absent in carotid body-denervated rats. Combining fentanyl with a KOR agonist attenuated respiratory depression in rats with intact carotid body but not in carotid body denervated rats. These findings highlight previously uncharacterized activation of carotid body afferents by fentanyl via KORs as opposed to depression of brainstem respiratory neurons by µ opioid receptors and suggest that KOR agonists might counteract the central depressive effects of opioids on breathing.
DOI: 10.6084/m9.figshare.930730.v1
title: Disgust and the politics of sex: Exposure to a disgusting odorant increases politically conservative views on sex and decreases support for gay marriage

description: Disgust has been implicated as a potential causal agent underlying socio-political attitudes and behaviors. Several recent studies have suggested that pathogen disgust may be a causal mechanism underlying social conservatism. However, the specificity of this effect is still in question. The present study tested the effects of disgust on a range of policy preferences to clarify whether disgust is generally implicated in political conservatism across public policy attitudes or is uniquely related to specific content domains. Self-reported socio-political attitudes were compared between participants in two experimental conditions: 1) an odorless control condition, and 2) a disgusting odor condition. In keeping with previous research, the present study showed that exposure to a disgusting odor increased endorsement of socially conservative attitudes related to sexuality. In particular, there was a strong and consistent link between induced disgust and less support for gay marriage.
DOI: 10.17632/m8sdstb8hz
title: রবীন্দ্রনাথের রাষ্ট্রচিন্তা : জাতীয়তাবাদের সংকীর্ণতা থেকে বিশ্বমানবতার দিকে

description: Abstract:
This article critically examines Rabindranath Tagore’s political thought, focusing on his rejection of narrow, aggressive nationalism and his philosophical commitment to universal humanism. Departing from the Eurocentric model of statehood rooted in conquest, exclusion, and racial superiority, Tagore envisioned the nation as a moral and cultural community that upholds empathy, diversity, and ethical self-realization. His well-known assertion—“Patriotism cannot be our final spiritual shelter; my refuge is humanity”—epitomizes this cosmopolitan outlook.
Drawing on his essays (‘Nationalism’, ‘The Crisis in Civilization’), lectures, and fiction (‘Ghare Baire’), the article explores how Tagore redefined nationalism through a spiritual lens, resisting both colonial oppression and the internal dangers of chauvinistic patriotism. He articulated an ideal of ‘swaraj’ not merely as political autonomy but as moral awakening and self-reliant cultural regeneration. His critique of Western modernity and imperialistic statecraft is situated within a broader ethical framework that anticipates contemporary discourses on cosmopolitanism and postcolonial critique.
Further, the paper examines Tagore’s alignment and divergence with figures such as Tolstoy, Gandhi, and Kant, revealing the depth and originality of his humanist internationalism. Institutions like Visva-Bharati embody his belief in intercultural education and the harmony of civilizations. In an era marked by the resurgence of identity-based nationalism, Tagore’s thought offers a prophetic alternative—one that insists on solidarity over supremacy, dialogue over domination.
Ultimately, the study argues that Tagore’s political vision transcends its historical context to address ongoing global crises, offering a framework for reimagining the nation not as a fortress of exclusion, but as a site of ethical engagement and planetary responsibility.

Keywords: Rabindranath Tagore, nationalism, cosmopolitanism, humanism, postcolonial thought, swaraj, political ethics.

ভূমিকা:
বিশ্বসভ্যতার উন্মেষপর্বে যখন জাতীয়তাবাদের ধারণা একদিকে ঔপনিবেশিক শোষণের বিরুদ্ধে প্রতিবাদী হাতিয়ার হয়ে উঠেছে, অন্যদিকে তা আবার আত্মপরিচয় ও জাত্যাভিমান-নির্ভর সংকীর্ণ রাজনীতির জন্ম দিচ্ছে—ঠিক সেই সন্ধিক্ষণে রবীন্দ্রনাথ ঠাকুর তাঁর অনন্য রাষ্ট্রদর্শন ও মানবতাবাদী চিন্তায় জাতীয়তাবাদের মূলগত পর্যালোচনার প্রস্তাব রাখেন। তিনি জাতীয়তাবাদকে কোনো একরৈখিক রাজনীতির সংজ্ঞায় আবদ্ধ করেননি, বরং এক বহুমাত্রিক নৈতিক ও আধ্যাত্মিক দৃষ্টিকোণ থেকে জাতি-রাষ্ট্রের সীমানাকে অতিক্রম করে মানবতার বৃহত্তর পরিসরে উত্তরণ ঘটাতে চেয়েছেন। তাঁর এই দৃষ্টিভঙ্গি তৎকালীন ইউরোপীয় আধিপত্যবাদী জাতীয়তাবাদের রূঢ় অনুকরণ থেকে সম্পূর্ণ স্বতন্ত্র—এ এক অন্তর্জাগতিক অনুভবের সুসংবদ্ধ অভিব্যক্তি, যেখানে স্বদেশপ্রেম কখনোই অন্যজাতির প্রতি বিদ্বেষে রূপ নেয় না, বরং সংহতি, সহমর্মিতা ও বৈশ্বিক ন্যায়বোধে পরিণত হয়।
DOI: 10.17632/x26jj3h5yd
title: Incubator Bandung

description: Provide Data Incubator
DOI: 10.6084/m9.figshare.12900560.v1
title: Additional file 5 of Neural machine translation of chemical nomenclature between English and Chinese

description: Additional file 5: Manual spot check and result data set.
DOI: 10.6084/m9.figshare.28661504.v1
title: Data for <b><i>Structural bias in three-dimensional autoregressive generative machine learning of organic molecules</i></b>

description: Molecular databases used for training the autoregressive generative ML model G-SchNet, and databases of molecules generated by these trained models. Fitted PCA models for structural and bonding descriptors of molecules and the resulting principal components of all molecules, used for spatial analysis in a latent chemical space, are included.Databases tagged with properties and principal components trained/evaluated using the GSchNetTools Python package, available on GitHub.Detailed file descriptions are provided in the attached README.
DOI: 10.17632/r46xvhd44t
title: Data for: Behavior of Geopolymer Concrete under Cyclic Loading

description: Excel file of all testing result of three grade of geopolymer concrete are uploaded.