cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15124872
title: Trends in substitution models of protein evolution for phylogenetic inference

description: Substitution models of protein evolution describe the rates of evolutionary change among amino acids and are required for a wide variety of studies that include the reconstruction of phylogenetic histories and ancestral sequences, among others. The first substitution models of protein evolution were based on empirical protein sequences and, despite their unrealistic assumptions, they are still routinely used in protein phylogenetics. Next, the incorporation of additional parameters that inform about evolutionary constraints on the protein structure provided a significant increase in the accuracy of the predictions. However, despite the wide variety of substitution models of protein evolution that were presented, only a part of them have been implemented into evolutionary frameworks of practical use in phylogenetics. Here, we review general trends in the development and application of substitution models of protein evolution, including their framework implementations, goals, and improvement needs. We also present some detailed practical examples of phylogenetic inference based on advanced substitution models of protein evolution.
DOI: 10.5281/zenodo.15166347
title: QCA-2025-SCC-QD78788 R&D data

description: Project Code: QCA-2025-SCC-QD78788.This project is classified as CONFIDENTIAL. All information, data, and results associated with this project are strictly restricted to authorized personnel only. Any dissemination, distribution, or copying of the project details is strictly prohibited without prior approval from the project lead and the university's Office of Research Compliance.
DOI: 10.5281/zenodo.15166348
title: QCA-2025-SCC-QD78788 R&D data

description: Project Code: QCA-2025-SCC-QD78788.This project is classified as CONFIDENTIAL. All information, data, and results associated with this project are strictly restricted to authorized personnel only. Any dissemination, distribution, or copying of the project details is strictly prohibited without prior approval from the project lead and the university's Office of Research Compliance.
DOI: 10.15468/dl.bzt8yt
title: Occurrence Download

description: A dataset containing 365 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxypleurus nodieri Mulsant, 1839"
 ]
}

 The dataset includes 365 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008048-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.31508.01927
title: 3 Reported Sequences as of 16NOV2021 for the Coronavirus - Host: Tiger; in the USA /North America /Florida
DOI: 10.13140/rg.2.2.34024.60160/1
title: 6 Reported Sequences as of 16NOV2021 for the Coronavirus - Host: Environment in the USA /North America /Florida
DOI: 10.13140/rg.2.2.34863.46246/1
title: 1 Reported Sequence as of 16NOV2021 for the Coronavirus - Host: Ferret; in the USA /North America /Florida
DOI: 10.13140/rg.2.2.19134.82242
title: Publication- Pepoyan-poster.pub
DOI: 10.13140/rg.2.2.25688.42245
title: EL JUEGO DEL CALAMAR: LOS HORRORES DEL NEOLIBERALISMO
DOI: 10.15468/dl.fxz3kk
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sympetrum cordulegaster",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 47 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019258-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25573/serc.28021133
title: <b>Different mechanisms drive invertebrate and algae responses on an eco-engineered structure: consequences for diversity and functioning</b>

description: Data and analysis for submitted manuscript titled "Different mechanisms drive invertebrate and algae responses on an eco-engineered structure: consequences for diversity and functioning"
DOI: 10.25573/serc.28021133.v1
title: <b>Different mechanisms drive invertebrate and algae responses on an eco-engineered structure: consequences for diversity and functioning</b>

description: Data and analysis for submitted manuscript titled "Different mechanisms drive invertebrate and algae responses on an eco-engineered structure: consequences for diversity and functioning"
DOI: 10.25573/serc.28021133.v2
title: <b>Different mechanisms drive invertebrate and algae responses on an eco-engineered structure: consequences for diversity and functioning</b>

description: Data and analysis for submitted manuscript titled "Different mechanisms drive invertebrate and algae responses on an eco-engineered structure: consequences for diversity and functioning"
DOI: 10.15468/dl.uarbxj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cryphonectria parasitica",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019261-250920141307145/datasets/export for details.
DOI: 10.15468/dl.sgb8kw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cryphonectria parasitica",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019260-250920141307145/datasets/export for details.
DOI: 10.15468/dl.g9xt8e
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tholymis tillarga",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 182 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019262-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30218149
title: MD simulation files

description: Simplified Bletilla striata polysaccharide (BSP) and cinnamaldehyde-carboxymethyl chitosan (CC) atomic coordinates in gromacs format (*.gro) and topology files in itp format (*.itp) for gromacs all-atom molecular dynamics simulations.
DOI: 10.6084/m9.figshare.30218149.v1
title: MD simulation files

description: Simplified Bletilla striata polysaccharide (BSP) and cinnamaldehyde-carboxymethyl chitosan (CC) atomic coordinates in gromacs format (*.gro) and topology files in itp format (*.itp) for gromacs all-atom molecular dynamics simulations.
DOI: 10.15468/dl.rj8cn5
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scleria chlorantha"
 ]
}

 The dataset includes 27 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019263-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34810/data2606
title: Panthera tigris 72

description: Skeleton of Panthera tigris 72.
description: IPA, 1.1.0
DOI: 10.15468/dl.4ypyqy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Yucca gloriosa",
 "Country is Libya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019266-250920141307145/datasets/export for details.
DOI: 10.15468/dl.txat3c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Yucca gloriosa",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019265-250920141307145/datasets/export for details.
DOI: 10.15468/dl.89y4u8
title: Occurrence Download

description: A dataset containing 227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Yucca gloriosa",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 227 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019267-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y46qk5
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Fish collection NTNU University Museum",
 "TaxonKey is Platichthys flesus"
 ]
}

 The dataset includes 136 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019268-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6qpkyw
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tramea virginia",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 182 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019269-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17207917
title: Data files and figures for arXiv:2509.04431 (Extended applicability domain of viscous anisotropic hydrodynamics in (2+1)-D Bjorken flow with transverse expansion)
DOI: 10.5281/zenodo.17207918
title: Data files and figures for arXiv:2509.04431 (Extended applicability domain of viscous anisotropic hydrodynamics in (2+1)-D Bjorken flow with transverse expansion)
DOI: 10.25574/30489
title: Chandra X-ray Observatory ObsId 30489

description: Planck selected clusters hosting spectacular non-thermal filaments and extended diffuse radio emission sources
DOI: 10.15468/dl.5atmq8
title: Occurrence Download

description: A dataset containing 6885 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Beckmannia syzigachne"
 ]
}

 The dataset includes 6885 records from 268 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019271-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4zatk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((42.97485226354008 -21.004286056708583,46.366812062535054 -21.004286056708583,46.366812062535054 -17.612326257713608,42.97485226354008 -17.612326257713608,42.97485226354008 -21.004286056708583))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Theraphosidae"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019272-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2dywmw
title: CCDC 2233259: Experimental Crystal Structure Determination

description: Related Article: Guo Cheng, Sen Lu, Jing-Liang Yu, Qian-Mao Zhang, Li-Xin Wang|2025|Org.Biomol.Chem.|23|8474|doi:10.1039/d5ob01102g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.4f5fy6
title: Occurrence Download

description: A dataset containing 494 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Yucca gloriosa",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 494 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019274-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfkgbg
title: Occurrence Download

description: A dataset containing 1960 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trithemis aurora",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1960 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019275-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.683ujb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Yucca gloriosa",
 "Country is Peru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019273-250920141307145/datasets/export for details.
DOI: 10.15468/dl.apffgp
title: Occurrence Download

description: A dataset listing the 179509 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 179509 records were derived from 2891 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019254-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p88njf
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia heydei C.DC."
 ]
}

 The dataset includes 107 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004443-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v8qgca
title: Occurrence Download

description: A dataset containing 375585 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tyto alba (Scopoli, 1769)"
 ]
}

 The dataset includes 375585 records from 743 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050434-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ap9ct3
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "InstitutionCode is ku",
 "TaxonKey is Ripiphoridae"
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069692-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jaaujo
title: Occurrence Download

description: A dataset containing 548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Canada",
 "Geometry POLYGON((-75.70426 45.42743,-75.71292 45.42225,-75.71696 45.42177,-75.72507 45.42207,-75.7285 45.4193,-75.71679 45.39978,-75.7134 45.39423,-75.70367 45.39926,-75.70711 45.4042,-75.68855 45.41267,-75.68838 45.42219,-75.69138 45.42327,-75.6949 45.42448,-75.69971 45.42707,-75.70426 45.42743))",
 {
 "or" : [
 "DatasetKey is Canadian Museum of Nature Herbarium",
 "DatasetKey is The New York Botanical Garden Herbarium (NY)",
 "DatasetKey is Botany Division, Yale Peabody Museum"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Bryophyta",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 548 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004443-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dr2kxy
title: Occurrence Download

description: A dataset containing 14221755 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Colombia"
 ]
}

 The dataset includes 14221755 records from 3168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064117-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34992/60y2-d667
title: Northern Hemisphere Extratropical Cyclone Tracks in CMIP6
DOI: 10.15468/dl.4egae9
title: Occurrence Download

description: A dataset containing 359 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-81.14242 73.62994,-81.2759 72.94031,-81.58734 72.17282,-81.48724 71.13837,-80.10797 70.04831,-78.60636 69.59226,-77.36058 69.95933,-77.33833 72.77346,-77.71651 72.89582,-79.26262 72.46202,-79.98562 72.82908,-81.14242 73.62994))",
 "OccurrenceStatus is Present",
 "TaxonKey is Ascomycota"
 ]
}

 The dataset includes 359 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001714-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27634772
title: Additional file 2 of Chromosome level assemblies of Nakaseomyces (Candida) bracarensis uncover two distinct clades and define its adhesin repertoire

description: Supplementary Material 2: Excel formatted file containing the Supplementary tables
DOI: 10.6084/m9.figshare.27634772.v1
title: Additional file 2 of Chromosome level assemblies of Nakaseomyces (Candida) bracarensis uncover two distinct clades and define its adhesin repertoire

description: Supplementary Material 2: Excel formatted file containing the Supplementary tables
DOI: 10.6084/m9.figshare.26692498
title: Additional file 7 of High-content analysis identified synergistic drug interactions between INK128, an mTOR inhibitor, and HDAC inhibitors in a non-small cell lung cancer cell line

description: Additional file 7: Sup Table 1. List of all features in high-content analysis. 239 features representing morphology, texture, and intensity information are described.
DOI: 10.6084/m9.figshare.26692498.v1
title: Additional file 7 of High-content analysis identified synergistic drug interactions between INK128, an mTOR inhibitor, and HDAC inhibitors in a non-small cell lung cancer cell line

description: Additional file 7: Sup Table 1. List of all features in high-content analysis. 239 features representing morphology, texture, and intensity information are described.
DOI: 10.6084/m9.figshare.26692501
title: Additional file 8 of High-content analysis identified synergistic drug interactions between INK128, an mTOR inhibitor, and HDAC inhibitors in a non-small cell lung cancer cell line

description: Additional file 8: Sup Table 2. Relative growth rates of survival assays. All combinations of survival assay using CCK8 reagents were described.
DOI: 10.6084/m9.figshare.26692501.v1
title: Additional file 8 of High-content analysis identified synergistic drug interactions between INK128, an mTOR inhibitor, and HDAC inhibitors in a non-small cell lung cancer cell line

description: Additional file 8: Sup Table 2. Relative growth rates of survival assays. All combinations of survival assay using CCK8 reagents were described.
DOI: 10.6084/m9.figshare.27634786
title: Additional file 1 of Modifiable risk factors that mediate the effect of insomnia on the risk of low back pain: a network mendelian randomization study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27634786.v1
title: Additional file 1 of Modifiable risk factors that mediate the effect of insomnia on the risk of low back pain: a network mendelian randomization study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27634787
title: Additional file 1 of Chronic corticosterone exposure causes anxiety- and depression-related behaviors with altered gut microbial and brain metabolomic profiles in adult male C57BL/6J mice

description: Additional file 1: Supplementary Table 1. A battery of behavioral tests in mice chronically treated with corticosterone. Supplementary Table 2. The weight of brain tissue used for metabolomic analysis. Supplementary Table 3. The Q1 or Q3 pre bias voltages, collision energies and mass transitions used in metabolomic analysis. Supplementary Table 4. Statistical analysis of behavioral data in mice chronically treated with corticosterone. Supplementary Table 5. Relative abundance of the intestinal microbiota at the phylum level in mice chronically treated with corticosterone. Supplementary Table 6. Relative abundance of the intestinal microbiota at the genus level in mice chronically treated with corticosterone. Supplementary Table 7. Neurotransmitters and their metabolites in the plasma and brain of mice chronically treated with corticosterone. Supplementary Table 8. Brain and plasma metabolites in mice chronically treated with corticosterone
DOI: 10.6084/m9.figshare.27634787.v1
title: Additional file 1 of Chronic corticosterone exposure causes anxiety- and depression-related behaviors with altered gut microbial and brain metabolomic profiles in adult male C57BL/6J mice

description: Additional file 1: Supplementary Table 1. A battery of behavioral tests in mice chronically treated with corticosterone. Supplementary Table 2. The weight of brain tissue used for metabolomic analysis. Supplementary Table 3. The Q1 or Q3 pre bias voltages, collision energies and mass transitions used in metabolomic analysis. Supplementary Table 4. Statistical analysis of behavioral data in mice chronically treated with corticosterone. Supplementary Table 5. Relative abundance of the intestinal microbiota at the phylum level in mice chronically treated with corticosterone. Supplementary Table 6. Relative abundance of the intestinal microbiota at the genus level in mice chronically treated with corticosterone. Supplementary Table 7. Neurotransmitters and their metabolites in the plasma and brain of mice chronically treated with corticosterone. Supplementary Table 8. Brain and plasma metabolites in mice chronically treated with corticosterone
DOI: 10.6084/m9.figshare.27634808
title: Additional file 1 of Phenotyping of a new yeast mapping population reveals differences in the activation of the TORC1 signalling pathway between wild and domesticated yeast strains

description: Supplementary Material 1. Table S1: Phenotypic, genomic and ecological data of the TOMAN-G population. Table S2: Number of strains by clade in the TOMAN-G population.