cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14437487.v3
title: Additional file of Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin

description: Additional file of Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin
DOI: 10.6084/m9.figshare.14437490
title: Additional file 1 of Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin

description: Additional file 1: Differentially expressed genes clustered by function at each time point. (XLS 96 KB)
DOI: 10.6084/m9.figshare.14437490.v1
title: Additional file 1 of Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin

description: Additional file 1: Differentially expressed genes clustered by function at each time point. (XLS 96 KB)
DOI: 10.6084/m9.figshare.14437493
title: Additional file 2 of Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin

description: Additional file 2: All genes list; fold changes (stimulated vs non-stimulated) and q values by time for DE genes. (XLS 272 KB)
DOI: 10.6084/m9.figshare.14437496
title: Additional file 3 of Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin

description: Additional file 3: Functions of molecules (genes) involved in each gene network, by time. Interaction with all possible molecules including genes with q values higher than 0.05. (XLS 52 KB)
DOI: 10.6084/m9.figshare.14437493.v1
title: Additional file 2 of Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin

description: Additional file 2: All genes list; fold changes (stimulated vs non-stimulated) and q values by time for DE genes. (XLS 272 KB)
DOI: 10.6084/m9.figshare.14437496.v1
title: Additional file 3 of Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin

description: Additional file 3: Functions of molecules (genes) involved in each gene network, by time. Interaction with all possible molecules including genes with q values higher than 0.05. (XLS 52 KB)
DOI: 10.6084/m9.figshare.14437607.v1
title: Additional file of An optimized protocol for microarray validation by quantitative PCR using amplified amino allyl labeled RNA

description: Additional file of An optimized protocol for microarray validation by quantitative PCR using amplified amino allyl labeled RNA
DOI: 10.17632/wmtfvz9hcb.3
title: Custo-efetividade de medicamentos biológicos no tratamento da psoríase em placas moderada a grave [Cost-effectiveness of biological drugs in moderate to severe plaque psoriasis]

description: Trata-se do repositório de versões do modelo completo de análise de custo-efetividade de medicamentos biológicos no tratamento da psoríase em placas moderada a grave elaborado pelo Núcleo de Avaliação de Tecnologias em Saúde do Instituto Nacional de Cardiologia (NATS-INC) com o intuito de dar subsídio às discussões sobre incorporação de tratamentos no Sistema Único de Saúde (SUS) pela Comissão Nacional de Incorporação de Tecnologia no SUS (Conitec). [This is the repository of versions of the complete model of cost-effectiveness analysis of biological drugs in the treatment of moderate to severe plaque psoriasis builded by the Center for the Evaluation of Health Technologies of the National Institute of Cardiology (NATS-INC) aiming to support the reimbursement discussions of the National Commission for Incorporating Technology into SUS (Conitec)] 24/08/2020 - Uma nova versão do modelo foi disponibilizada, considerando: - Revisão do número de doses do ustequinumabe - Novo preço proposto para o ixequizumabe - Novo preço proposto para o risanquizumabe 14/04/2021 - Uma nova versão do modelo foi disponibilizada, considerando: - Inclusão da opção terapêutica com certolizumabe
DOI: 10.6084/m9.figshare.14437610
title: Additional file 1 of An optimized protocol for microarray validation by quantitative PCR using amplified amino allyl labeled RNA

description: Additional file 1: MIQE_checklist. Minimum information for publication of quantitative real-time PCR experiments guidelines. (XLS 36 KB)
DOI: 10.6084/m9.figshare.14437610.v1
title: Additional file 1 of An optimized protocol for microarray validation by quantitative PCR using amplified amino allyl labeled RNA

description: Additional file 1: MIQE_checklist. Minimum information for publication of quantitative real-time PCR experiments guidelines. (XLS 36 KB)
DOI: 10.17632/tp7fkkxk44.2
title: Invadopodia oscillation data

description: This is the experimental data for the paper "Recursive Feedback Between Matrix Dissipation and Chemo-mechanical Signaling Drives Oscillatory Growth of Cancer Cell Invadopodia" https://doi.org/10.1016/j.celrep.2021.109047 Invadopodia_plasticity&treatments.xlsx ---&gt; The measured invadopodia length with time for different plasticity levels and treatments Invadopodia_stiffness.xlsx ---&gt; The measured invadopodia length with time for different stiffness HT-1080 data.xlsx ---&gt; The measured circularity of HT-1080 cells
DOI: 10.6084/m9.figshare.14437637.v1
title: Additional file of Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster

description: Additional file of Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster
DOI: 10.6084/m9.figshare.14437637.v2
title: Additional file of Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster

description: Additional file of Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster
DOI: 10.6084/m9.figshare.14437640
title: Additional file 1 of Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster

description: Additional file 1: FDR 100 and GO 309 genes. The top FDR ranked genes with gene expression changes at 0-2, 24, 48 and 72 hours post-mating. The top FDR ranked genes with gene expression changes in brain tissues 24 hours post-mating. Gene Ontology functional enrichment of 309 genes that are the intersection of genes identified in head tissues at four time points assayed. (XLSX 112 KB)
DOI: 10.17632/4k6ffxmmwr.1
title: MATLAB codes for WBM and SEA of the Noise-Box plate-cavity system

description: This database lists the MATLAB codes developed in the thesis. Two folders are respectively for the Wave Based Method used in Chapter 6 and the Statistical Energy Analysis used in Chapter 7
DOI: 10.6084/m9.figshare.14437640.v1
title: Additional file 1 of Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster

description: Additional file 1: FDR 100 and GO 309 genes. The top FDR ranked genes with gene expression changes at 0-2, 24, 48 and 72 hours post-mating. The top FDR ranked genes with gene expression changes in brain tissues 24 hours post-mating. Gene Ontology functional enrichment of 309 genes that are the intersection of genes identified in head tissues at four time points assayed. (XLSX 112 KB)
DOI: 10.6084/m9.figshare.14437643
title: Additional file 2 of Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster

description: Additional file 2: GO for each list. GO analyses of lists of top 100 FDR ranked genes from Additional file 1. (XLSX 75 KB)
DOI: 10.6084/m9.figshare.14437646
title: Additional file 3 of Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster

description: Additional file 3: Comparisons to other datasets. Analysis of overlap between this study and Mack et al study and analyses of overlap between this study and Goldman et al study. (XLSX 52 KB)
DOI: 10.6084/m9.figshare.14437637.v3
title: Additional file of Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster

description: Additional file of Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster
DOI: 10.6084/m9.figshare.14437643.v1
title: Additional file 2 of Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster

description: Additional file 2: GO for each list. GO analyses of lists of top 100 FDR ranked genes from Additional file 1. (XLSX 75 KB)
DOI: 10.6084/m9.figshare.14437646.v1
title: Additional file 3 of Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster

description: Additional file 3: Comparisons to other datasets. Analysis of overlap between this study and Mack et al study and analyses of overlap between this study and Goldman et al study. (XLSX 52 KB)
DOI: 10.17632/rvcv3t326p.2
title: Mihindukulasuriya, IBS virome

description: Supplementary Tables 1-4 belonging to the following manuscript on the intestinal virome in IBS: "Multi-omics analyses show disease, diet, and transcriptome interactions with the virome" Kathie A. Mihindukulasuriya, Ruben A.T. Mars, Abigail J. Johnson et al.
DOI: 10.17632/tdy2dkyrbv.1
title: Replication Data for "JUE Insight: Migration, Transportation Infrastructure, and the Spatial Transmission of COVID-19 in China"

description: Replication Data for "JUE Insight: Migration, Transportation Infrastructure, and the Spatial Transmission of COVID-19 in China"
DOI: 10.6084/m9.figshare.14437733.v1
title: Additional file of A three-way comparative genomic analysis of Mannheimia haemolytica isolates

description: Additional file of A three-way comparative genomic analysis of Mannheimia haemolytica isolates
DOI: 10.17632/nxvhnjmg8j.2
title: Data supporting "Using continuous turbidity and seismic measurements to unravel sediment provenance and interaction between suspended and bedload transport in an Alpine catchment"

description: These data support the paper "Using continuous turbidity and seismic measurements to unravel sediment provenance and interaction between suspended and bedload transport in an Alpine catchment" They include the time series of turbidity, seismic power, liquide discharge, temperature and rain measured during the 2018 - 2019 years in the Séveraisse catchment (French Alps).
DOI: 10.6084/m9.figshare.14437733.v13
title: Additional file of A three-way comparative genomic analysis of Mannheimia haemolytica isolates

description: Additional file of A three-way comparative genomic analysis of Mannheimia haemolytica isolates
DOI: 10.6084/m9.figshare.14437733.v14
title: Additional file of A three-way comparative genomic analysis of Mannheimia haemolytica isolates

description: Additional file of A three-way comparative genomic analysis of Mannheimia haemolytica isolates
DOI: 10.17632/cxygw32v67.1
title: Virtual tourism for older adults living in residential care: A mixed-method feasibility study
DOI: 10.17632/rb8r46rc3m.1
title: Sadat Area Data set
DOI: 10.6084/m9.figshare.14437736
title: Additional file 10 of A three-way comparative genomic analysis of Mannheimia haemolytica isolates

description: Additional file 10: Table S10: Type 3 effectors proteins from B, O and A1. (XLS 224 KB)
DOI: 10.17632/wssv9jvhgj.1
title: LINF_110013600

description: hypothetical protein - conserved; Leishmania infantum
DOI: 10.6084/m9.figshare.14437736.v1
title: Additional file 10 of A three-way comparative genomic analysis of Mannheimia haemolytica isolates

description: Additional file 10: Table S10: Type 3 effectors proteins from B, O and A1. (XLS 224 KB)
DOI: 10.6084/m9.figshare.14437733.v15
title: Additional file of A three-way comparative genomic analysis of Mannheimia haemolytica isolates

description: Additional file of A three-way comparative genomic analysis of Mannheimia haemolytica isolates
DOI: 10.17632/sk5jt9pfk3.1
title: LINF_110013400

description: 40S ribosomal protein S21; Leishmania infantum
DOI: 10.6084/m9.figshare.14437772
title: Additional file 6 of A three-way comparative genomic analysis of Mannheimia haemolytica isolates

description: Additional file 6: Table S6: B vs O, high confidence SNPs. (XLS 1 MB)
DOI: 10.6084/m9.figshare.14437775.v1
title: Additional file 7 of A three-way comparative genomic analysis of Mannheimia haemolytica isolates

description: Additional file 7: Table S7: B vs A1, high confidence SNPs. (XLS 6 MB)
DOI: 10.6084/m9.figshare.14437772.v1
title: Additional file 6 of A three-way comparative genomic analysis of Mannheimia haemolytica isolates

description: Additional file 6: Table S6: B vs O, high confidence SNPs. (XLS 1 MB)
DOI: 10.6084/m9.figshare.14437775
title: Additional file 7 of A three-way comparative genomic analysis of Mannheimia haemolytica isolates

description: Additional file 7: Table S7: B vs A1, high confidence SNPs. (XLS 6 MB)
DOI: 10.6084/m9.figshare.14437778
title: Additional file 8 of A three-way comparative genomic analysis of Mannheimia haemolytica isolates

description: Additional file 8: Table S8: O vs A1, high confidence SNPs. (XLS 5 MB)
DOI: 10.6084/m9.figshare.14437778.v1
title: Additional file 8 of A three-way comparative genomic analysis of Mannheimia haemolytica isolates

description: Additional file 8: Table S8: O vs A1, high confidence SNPs. (XLS 5 MB)
DOI: 10.17632/zw8dxvwj52.1
title: LINF_110013300

description: 40S ribosomal protein S21; Leishmania infantum
DOI: 10.17632/4nv3p6y764.1
title: LINF_110013100

description: hypothetical protein - conserved; Leishmania infantum
DOI: 10.6084/m9.figshare.14437784.v1
title: Additional file of Assessment of orthologous splicing isoforms in human and mouse orthologous genes

description: Additional file of Assessment of orthologous splicing isoforms in human and mouse orthologous genes
DOI: 10.6084/m9.figshare.14437787
title: Additional file 1 of Assessment of orthologous splicing isoforms in human and mouse orthologous genes

description: Additional file 1: Full list of human-mouse and mouse-human iso-orthologous transcripts. The additional file is an Excel spreadsheet consisting of two sheets: sheet 1 - orthologous splicing isoforms in the human - mouse comparison; sheet 2 - orthologous splicing isoforms in the mouse-human comparison. (XLS 4 MB)
DOI: 10.17632/pkfmj7zy67.1
title: Active dissolved organic nitrogen cycling hidden in large river and environmental implications
DOI: 10.6084/m9.figshare.14437787.v1
title: Additional file 1 of Assessment of orthologous splicing isoforms in human and mouse orthologous genes

description: Additional file 1: Full list of human-mouse and mouse-human iso-orthologous transcripts. The additional file is an Excel spreadsheet consisting of two sheets: sheet 1 - orthologous splicing isoforms in the human - mouse comparison; sheet 2 - orthologous splicing isoforms in the mouse-human comparison. (XLS 4 MB)
DOI: 10.17632/r99y3swyt2.1
title: LINF_110012900

description: PUF nine target 1 | cysteine peptidase PNT1; Leishmania infantum
DOI: 10.6084/m9.figshare.14437799.v5
title: Additional file of A potential role for intragenic miRNAs on their hosts' interactome

description: Additional file of A potential role for intragenic miRNAs on their hosts' interactome
DOI: 10.6084/m9.figshare.14437799.v3
title: Additional file of A potential role for intragenic miRNAs on their hosts' interactome

description: Additional file of A potential role for intragenic miRNAs on their hosts' interactome
DOI: 10.6084/m9.figshare.14437799.v6
title: Additional file of A potential role for intragenic miRNAs on their hosts' interactome

description: Additional file of A potential role for intragenic miRNAs on their hosts' interactome
DOI: 10.17632/4xntsrdjv8.1
title: CAD model of an aesthetic wooden chair

description: Presented here is a CAD model of an aesthetic wooden chair. This can be used in 3D printing, or in manufacturing the chair. Also attached is the drawing of the CAD.
DOI: 10.17632/h3grdm2565.1
title: Northwestern Pacific Diurnal Internal Tide data

description: Northwestern Pacific Diurnal Internal Tide data
DOI: 10.6084/m9.figshare.14437808.v1
title: Additional file 3 of A potential role for intragenic miRNAs on their hosts' interactome

description: Additional file 3: Evaluation of Target Prediction Methods. Based on protein and mRNA expression measurements in miRNA transfection experiments, we evaluated the target prediction methods used in this study, as well as prediction agreement as a method of its own. We estimated sensitivity, specificity, and AUC for target prediction methods used and prediction agreement based on the Selbach data [74] for changes in mRNA and protein expression after miRNA overexpression. (XLS 41 KB)
DOI: 10.6084/m9.figshare.14437808
title: Additional file 3 of A potential role for intragenic miRNAs on their hosts' interactome

description: Additional file 3: Evaluation of Target Prediction Methods. Based on protein and mRNA expression measurements in miRNA transfection experiments, we evaluated the target prediction methods used in this study, as well as prediction agreement as a method of its own. We estimated sensitivity, specificity, and AUC for target prediction methods used and prediction agreement based on the Selbach data [74] for changes in mRNA and protein expression after miRNA overexpression. (XLS 41 KB)
DOI: 10.6084/m9.figshare.14437814
title: Additional file 5 of A potential role for intragenic miRNAs on their hosts' interactome

description: Additional file 5: Full Pathway Information. The table provides all 74 KEGG pathways associated with one or more host genes. For each KEGG pathway KEGG ID, pathway name, p-value and odds ratio for the observed number of host genes, total number of expected genes, total number of observed genes, total number of genes in that pathway, pathway url, host gene names and Entrez-IDs, target coverage and p-value, proportion of targets with conserved target sites within the hosts' pathway, proportion of targets with conserved target sites not within the hosts' pathway, q-value of the difference of these two proportions, and Entrez gene IDs for all predicted targets are provided. The asterisk behind a gene ID indicates a conserved target site for that target. It is important to note, however, that a proportion calculated from these gene IDs may differ from the proportion given, as the gene IDs are based on agreement of two prediction methods, whereas the proportion of conserved targets was calculated on predictions made by targetscan only. (XLS 56 KB)
DOI: 10.6084/m9.figshare.14437817
title: Additional file 6 of A potential role for intragenic miRNAs on their hosts' interactome

description: Additional file 6: Additional file6contains correlation data from which Figure2and additional file4have been generated. For both pathways, hosts and their predicted targets as well as correlation and p-value are provided. (XLS 28 KB)
DOI: 10.6084/m9.figshare.14437817.v1
title: Additional file 6 of A potential role for intragenic miRNAs on their hosts' interactome

description: Additional file 6: Additional file6contains correlation data from which Figure2and additional file4have been generated. For both pathways, hosts and their predicted targets as well as correlation and p-value are provided. (XLS 28 KB)
DOI: 10.17632/c52km273vv.4
title: Datasets and model files: Rubisco proton production can drive the elevation of CO₂ within condensates and carboxysomes

description: Supplementary data and COPASI modelling file for the analysis of Rubisco compartments. To access the manuscript follow this link: https://doi.org/10.1101/2020.07.08.125609
DOI: 10.6084/m9.figshare.14437814.v1
title: Additional file 5 of A potential role for intragenic miRNAs on their hosts' interactome

description: Additional file 5: Full Pathway Information. The table provides all 74 KEGG pathways associated with one or more host genes. For each KEGG pathway KEGG ID, pathway name, p-value and odds ratio for the observed number of host genes, total number of expected genes, total number of observed genes, total number of genes in that pathway, pathway url, host gene names and Entrez-IDs, target coverage and p-value, proportion of targets with conserved target sites within the hosts' pathway, proportion of targets with conserved target sites not within the hosts' pathway, q-value of the difference of these two proportions, and Entrez gene IDs for all predicted targets are provided. The asterisk behind a gene ID indicates a conserved target site for that target. It is important to note, however, that a proportion calculated from these gene IDs may differ from the proportion given, as the gene IDs are based on agreement of two prediction methods, whereas the proportion of conserved targets was calculated on predictions made by targetscan only. (XLS 56 KB)
DOI: 10.5281/zenodo.4697238
title: Features values of Solid-State Lithium Battery datasets

description: Features values of Solid-State Lithium Battery datasets.
DOI: 10.15468/5ymsjc
title: Eryngiopus Langroudiensis N. Sp. (Acari: Stigmaeidae) From Guilan, Iran

description: This dataset contains the digitized treatments in Plazi based on the original journal article Khanjani, M., Hajizadeh, J., Ueckermann, E. A. (2014): Eryngiopus Langroudiensis N. Sp. (Acari: Stigmaeidae) From Guilan, Iran. Acarologia 54 (2): 171-176, DOI: 10.1051/acarologia/20142124, URL: http://dx.doi.org/10.1051/acarologia/20142124
DOI: 10.5281/zenodo.4570835
title: Figure source data for 'Controlling the anisotropy of a van der Waals antiferromagnet with light'

description: This folder contains all the source data of the figures in the work 'Controlling the anisotropy of a van der Waals antiferromagnet with light'. <strong>Contents</strong> <em>Figure 1:</em> (D) Absorption data NiPS3: 1D.txt (E) Time resolved polarization data for different pump photon energies: 1E.txt <em>Figure 2:</em> (A) Amplitude for different photon energies: 2A.txt (B) Amplitude for different fluence; 2B.txt (C) Amplitude for different fluences: 2C.txt <em>Figure 3</em> (A) Time resolved polarization data for different temperatures: 3A.txt (B) Time resolved polarization data for different temperatures: 3B.txt (C) Frequency and damping for different temperatures: 3C.txt (D) Frequency and damping for different temperatures: 3D.txt <em>Figure 4</em> (A) Time resolved polarization data for different probe polarizations: 4A.txt (B) Amplitude for different probe polarization: 4B.txt
DOI: 10.5281/zenodo.4570834
title: Figure source data for 'Controlling the anisotropy of a van der Waals antiferromagnet with light'

description: This folder contains all the source data of the figures in the work 'Controlling the anisotropy of a van der Waals antiferromagnet with light'. <strong>Contents</strong> <em>Figure 1:</em> (D) Absorption data NiPS3: 1D.txt (E) Time resolved polarization data for different pump photon energies: 1E.txt <em>Figure 2:</em> (A) Amplitude for different photon energies: 2A.txt (B) Amplitude for different fluence; 2B.txt (C) Amplitude for different fluences: 2C.txt <em>Figure 3</em> (A) Time resolved polarization data for different temperatures: 3A.txt (B) Time resolved polarization data for different temperatures: 3B.txt (C) Frequency and damping for different temperatures: 3C.txt (D) Frequency and damping for different temperatures: 3D.txt <em>Figure 4</em> (A) Time resolved polarization data for different probe polarizations: 4A.txt (B) Amplitude for different probe polarization: 4B.txt
DOI: 10.15468/2q54g4
title: Redescription Of Paracaropsis Travisi (Baker, 1949) (Trombidiformes: Cheyletidae), With Range Expansion, Additional Host Records, And Reevaluation Of Cheyletid Chaetotaxy Based On The Sejugal Furrow

description: This dataset contains the digitized treatments in Plazi based on the original journal article Skvarla, M., Fisher, J. R., Dowling, A. P. G. (2014): Redescription Of Paracaropsis Travisi (Baker, 1949) (Trombidiformes: Cheyletidae), With Range Expansion, Additional Host Records, And Reevaluation Of Cheyletid Chaetotaxy Based On The Sejugal Furrow. Acarologia 54 (3): 335-345, DOI: 10.1051/acarologia/20142135, URL: http://dx.doi.org/10.1051/acarologia/20142135