cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34808/7051-6a30
title: CERVIX UTERI, Exocervix - Female, 46 - Tissue image [4100730020132441]

description: This is the histopathological image of CERVIX UTERI tissue sample obtained in University of Warmia and Mazury in Olsztyn and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 46Clinical description: HSIL in the pap smear.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: Cervical squamous epithelium without dysplasia.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: CERVIX UTERITissue: ExocervixType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: University of Warmia and Mazury in Olsztyn
DOI: 10.48370/ofd/cfeo94
title: Myodes glareolus - 34742, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-02-07, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/v5gd-bf58
title: Dermatofibroma, NOS - Female, 34 - Tissue image [7050730000138961]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 34Clinical description: 0,4 cm light-brown lesion of skin of calf.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: FIBROMATOUS NEOPLASMSDiagnosis: Dermatofibroma, NOSResult of the histopathological examination: Dermatofibroma- complete excision.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of calfType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/gdsd-8k28
title: Squamous cell carcinoma, HPV positive - Female, 60 - Tissue image [1230630016194291]

description: This is the histopathological image of TONSIL tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 60Clinical description: Tumor of right palatine tonsil.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: SQUAMOUS CELL NEOPLASMSDiagnosis: Squamous cell carcinoma, HPV positiveResult of the histopathological examination: Squamous cell carcinoma, non-keratinizing G3 of tonsil: CK5/6+, p16+, p40+, Ki-67 90%.Sample:Material: FFPECollecting method: Surgical specimenTopography: LIP, ORAL CAVITY AND PHARYNXOrgan: TONSILTissue: Palatine tonsilType of staining: positive/IHCStaining: Not applicableAntibody: CK 5/6Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/j6h3-nf21
title: Infiltrating lobular carcinoma, NOS - Female, 90 - Tissue image [8160730027008761]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 90Clinical description: 50 x 40 mm hypoechoic area of left breast on ultrasound. Suspicion of breast carcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Infiltrating lobular carcinoma, NOSResult of the histopathological examination: Invasive lobular breast carcinoma (e-cadherin-, p120 cytoplasmic reaction)): NHG2 (3+2+1: 1 mitosis per 10 HPF) (B5).
Ki-67 20%.Sample:Material: FFPECollecting method: Core-needle biopsyTopography: BREASTOrgan: BREASTTissue: Central portion of breastType of staining: positive/IHCStaining: Not applicableAntibody: p120 cateninTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/4bbt-mj55
title: LIVER AND INTRAHEPATIC BILE DUCTS, Liver - Male, 3 - Tissue image [5050730009926981]

description: This is the histopathological image of LIVER AND INTRAHEPATIC BILE DUCTS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 3Clinical description: Tumor of the right hepatic lobe. An elevated level of AFP in the blood serum.Gender: MaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: The liver of normal histological structure.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: LIVER AND INTRAHEPATIC BILE DUCTSTissue: LiverType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/5jpvgh
title: Myodes glareolus - 9933, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-07-04, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/27dg-kw66
title: Invasive breast carcinoma of no special type - Female, 63 - Tissue image [4120730022885651]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 63Clinical description: Core needle biopsy: breast carcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Invasive breast carcinoma of no special typeResult of the histopathological examination: Invasive breast carcinoma- NHG3. PR: negative reaction in carcinoma cells.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Upper-outer quadrant of breastType of staining: positive/IHCStaining: Not applicableAntibody: PRTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/z53z-z894
title: Obstructive hypertrophic cardiomyopathy - Female, 25 - Tissue image [2280630018292461]

description: This is the histopathological image of HEART, MEDIASTINUM, AND PLEURA tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 25Clinical description: Hypertrophic cardiomyopathy.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter IX - Diseases of the circulatory systemDiagnosis: Obstructive hypertrophic cardiomyopathyResult of the histopathological examination: Hypertrophic cardiomyopathy: hypertrophy of muscular fibres, fibrosis of myocardium.Sample:Material: FFPECollecting method: Surgical specimenTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: HEART, MEDIASTINUM, AND PLEURATissue: HeartType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/gnj1jr
title: Myodes glareolus - 93889, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1970-09-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/xvtf-6s49
title: Tubular carcinoma - Female, 66 - Tissue image [5040730020276211]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 66Clinical description: 11 mm irregular hypoechoic lesion of left breast on ultrasound.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Tubular carcinomaResult of the histopathological examination: Tubular carcinoma of breast (NHG1). Tumor composed of tubules and glands lined by single layer of neoplastic cells. 
ER+, PR-, HER2-, Ki-67 5%.Sample:Material: FFPECollecting method: Core-needle biopsyTopography: BREASTOrgan: BREASTTissue: Upper-outer quadrant of breastType of staining: positive/IHCStaining: Not applicableAntibody: PRTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/rrsj-7y04
title: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS, Parovarian region - Female, 57 - Tissue image [3220630024687831]

description: This is the histopathological image of OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 57Clinical description: The tumor of the left ovary.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: The peritoneal surface is free of cancer cells.Sample:Material: FFPECollecting method: Autopsy specimenTopography: FEMALE GENITAL ORGANSOrgan: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANSTissue: Parovarian regionType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/7vzdej/gjokzh
title: FMW Amylocorticium subincarnatum (Peck) Pouzar M-3317.JPG

description: :unav
DOI: 10.34808/mqfv-vn84
title: Squamous cell carcinoma, nonkeratinizing, NOS - Male, 58 - Tissue image [10020729522713041]

description: This is the histopathological image of NASOPHARYNX tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 58Clinical description: Tumor of nasopharynx.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: SQUAMOUS CELL NEOPLASMSDiagnosis: Squamous cell carcinoma, nonkeratinizing, NOSResult of the histopathological examination: Squamous cell carcinoma non-keratinizing G3: KAE1/AE3+, p16-, HPV-, EBV-.Sample:Material: FFPECollecting method: Surgical biopsyTopography: LIP, ORAL CAVITY AND PHARYNXOrgan: NASOPHARYNXTissue: Nasopharynx, NOSType of staining: positive/IHCStaining: Not applicableAntibody: CK PAN (AE1/AE3)Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/y522-1f25
title: Pheochromocytoma, NOS - Female, 62 - Tissue image [1102063002269161]

description: This is the histopathological image of ADRENAL GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 62Clinical description: Tumor of right adrenal gland.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: PARAGANGLIOMAS AND GLOMUS TUMORSDiagnosis: Pheochromocytoma, NOSResult of the histopathological examination: Pheochromocytoma: Chromogranin+, Synaptophysin+, CKAE1/AE3-, Melan A-, Inhibin-, Ki-67 1%.Sample:Material: FFPECollecting method: Surgical specimenTopography: THYROID AND OTHER ENDOCRINE GLANDSOrgan: ADRENAL GLANDTissue: Adrenal, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/7vzdej/rjk8fl
title: FMW Amylocorticium subincarnatum (Peck) Pouzar M-3317 (3).JPG

description: :unav
DOI: 10.48370/ofd/igxhof
title: Myodes glareolus - 147068, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-07-12, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/rc60-9650
title: Sessile serrated adenoma, NOS - Female, 44 - Tissue image [8140730001727271]

description: This is the histopathological image of COLON tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 44Clinical description: Brown polyp of cecum, diameter 1,8 cm.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Sessile serrated adenoma, NOSResult of the histopathological examination: Sessile serrated adenoma: distorted serrated crypts with basal dilatation and crypt branching, epithelium with abundant mucin.Sample:Material: FFPECollecting method: Excision of lesionsTopography: DIGESTIVE ORGANSOrgan: COLONTissue: CecumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/7vzdej/0rrixz
title: FMW Amylocorticium subincarnatum (Peck) Pouzar M-3317 (2).JPG

description: :unav
DOI: 10.34808/2r77-zq48
title: Breast, unspecified - Female, 58 - Tissue image [2210630020344811]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 58Clinical description: Breast tumorGender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter II - NeoplasmsDiagnosis: Breast, unspecifiedResult of the histopathological examination: Neuroendocrine tumor of the breast G2 (NET G2). IHC: synaptophysin +, CD56 +, chromogranin-.  ER (+++, 100%) TS 8/8
PR (++. 50%) TS 7/8
Her2: 1+ (negative)
Ki67: 25%
E cadherin(-), Mammoglobin (focally +). Tumor reaches the  vicinity of the anterior resection margin.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Upper-outer quadrant of breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/7vzdej
title: Amylocorticium subincarnatum (Peck) Pouzar, 3317

description: Fungarium Macromycetes
DOI: 10.48370/ofd/qf0zze
title: Myodes glareolus - 44454, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-07-03, in: Białowieża National Park, Poland. Material type:
DOI: 10.6084/m9.figshare.19843924
title: Supplementary Material for: Silencing of TRIM44 Inhibits Inflammation and Alleviates Traumatic Brain Injury in Rats by Downregulating TLR4-NF-κB Signaling

description: <b><i>Background:</i></b> Neuroinflammation subsequent to traumatic brain injury (TBI) is important for the recovery of patients and is associated with neurodegenerative changes post-TBI. The tripartite motif containing 44 (TRIM44) protein is an E3 ligase involved in the regulation of immune function with no previously known link to TBI. This study explores the connection between TRIM44 and TBI. <b><i>Methods:</i></b> After induction of TBI in rats by control cortex injury, TRIM44 expressions were determined with quantitative real-time reverse transcription polymerase chain reaction and Western blot, and Toll-like receptor 4 (TLR4)-NF-κB signaling was examined by the expression of TLR4, p65 phosphorylation, and the specific NF-κB transcription activity. The effects of TRIM44 knockdown on inflammation, neurological function, and TLR4-NF-κB signaling in TBI rats were revealed by the detection of proinflammatory cytokines and TLR4-NF-κB signaling molecules, modified neurological severity score, brain water content, and Evans blue permeability. <b><i>Results:</i></b> We found that TRIM44 expression was significantly increased following TBI induction along with TLR4-NF-κB activation. Silencing of TRIM44 suppressed proinflammatory cytokine production, improved neurological outcomes, alleviated brain edema, and inhibited TLR4-NF-κB signaling in TBI rats. <b><i>Conclusion:</i></b> Our findings suggest that suppressing TRIM44 or modulation of relevant pathways may be a therapeutic strategy for TBI.
DOI: 10.6084/m9.figshare.19843924.v1
title: Supplementary Material for: Silencing of TRIM44 Inhibits Inflammation and Alleviates Traumatic Brain Injury in Rats by Downregulating TLR4-NF-κB Signaling

description: <b><i>Background:</i></b> Neuroinflammation subsequent to traumatic brain injury (TBI) is important for the recovery of patients and is associated with neurodegenerative changes post-TBI. The tripartite motif containing 44 (TRIM44) protein is an E3 ligase involved in the regulation of immune function with no previously known link to TBI. This study explores the connection between TRIM44 and TBI. <b><i>Methods:</i></b> After induction of TBI in rats by control cortex injury, TRIM44 expressions were determined with quantitative real-time reverse transcription polymerase chain reaction and Western blot, and Toll-like receptor 4 (TLR4)-NF-κB signaling was examined by the expression of TLR4, p65 phosphorylation, and the specific NF-κB transcription activity. The effects of TRIM44 knockdown on inflammation, neurological function, and TLR4-NF-κB signaling in TBI rats were revealed by the detection of proinflammatory cytokines and TLR4-NF-κB signaling molecules, modified neurological severity score, brain water content, and Evans blue permeability. <b><i>Results:</i></b> We found that TRIM44 expression was significantly increased following TBI induction along with TLR4-NF-κB activation. Silencing of TRIM44 suppressed proinflammatory cytokine production, improved neurological outcomes, alleviated brain edema, and inhibited TLR4-NF-κB signaling in TBI rats. <b><i>Conclusion:</i></b> Our findings suggest that suppressing TRIM44 or modulation of relevant pathways may be a therapeutic strategy for TBI.
DOI: 10.34808/e6bq-1w60
title: Infiltrating duct carcinoma, NOS - Female, 37 - Tissue image [412073001259191]

description: This is the histopathological image of BREAST tissue sample obtained in University of Warmia and Mazury in Olsztyn and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 37Clinical description: Breast tumor.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: DUCTAL AND LOBULAR NEOPLASMSDiagnosis: Infiltrating duct carcinoma, NOSResult of the histopathological examination: Breast carcinoma NST G2.Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Lower-outer quadrant of breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: University of Warmia and Mazury in Olsztyn
DOI: 10.34808/43yz-jd40
title: Dermatofibroma, NOS - Female, 41 - Tissue image [7050730000134791]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 41Clinical description: 0,5 cm flat grey lesion of skin of lower limb.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: FIBROMATOUS NEOPLASMSDiagnosis: Dermatofibroma, NOSResult of the histopathological examination: Dermatofibroma- complete excision.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of lower limbType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48370/ofd/yt3ggn
title: Myodes glareolus - 161187, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1992-05-26, in: Białowieża National Park, Poland. Material type:
DOI: 10.34808/v2pb-5y30
title: Classical Hodgkin lymphoma, mixed cellularity, NOS - Male, 5 - Tissue image [5070730026194771]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 5Clinical description: Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: CHOROBA HODGKINADiagnosis: Classical Hodgkin lymphoma, mixed cellularity, NOSResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Axillary lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: CD 20Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk