cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/15097611.v1
title: Data underlying the publication: Novel anti-repression mechanism of H-NS proteins by a phage protein

description: Data underlying the publication: Novel anti-repression mechanism of H-NS proteins by a phage protein. See the README files for the dataset dependent description .
DOI: 10.4121/15097611
title: Data underlying the publication: Novel anti-repression mechanism of H-NS proteins by a phage protein

description: Data underlying the publication: Novel anti-repression mechanism of H-NS proteins by a phage protein. See the README files for the dataset dependent description .
DOI: 10.4121/15082512.v1
title: Interview Instruments for Multiple Case Study of Citizen Engagement with Open Government Data

description: The datasets contains the interview questions asked to different types of respondent of the multiple case study of citizen engagement with OGD. The interviews aimed at collecting qualitative data to identify factors derived from the literature and explore missing factors that influence citizens to engage with OGD. The English version files were used to interview the Hack de Valse Start case respondents while the Indonesian ones were for the Kawal Pemilu case respondents.<br>
DOI: 10.4121/15082512
title: Interview Instruments for Multiple Case Study of Citizen Engagement with Open Government Data

description: The datasets contains the interview questions asked to different types of respondent of the multiple case study of citizen engagement with OGD. The interviews aimed at collecting qualitative data to identify factors derived from the literature and explore missing factors that influence citizens to engage with OGD. The English version files were used to interview the Hack de Valse Start case respondents while the Indonesian ones were for the Kawal Pemilu case respondents.<br>
DOI: 10.4121/15057378.v1
title: Dataset accompanying the paper "Tracking fluorescent and ferrimagnetic sediment tracers on an energetic ebb-tidal delta to monitor grain size-selective dispersal"

description: Dataset accompanying paper, "Tracking fluorescent and ferrimagnetic sediment tracers on an energetic ebb-tidal delta to monitor grain size-selective dispersal", published in Ocean & Coastal Management in 2021. We conducted a sediment tracer study on Ameland ebb-tidal delta (the Netherlands) to determine sediment transport patterns as a function of grain size, with the goal of supporting future coastal sand nourishments. Sediment samples were obtained via shipboard Van Veen grab and dried in the laboratory. Fluorescent and ferrimagnetic tracer particles were separated visually and magnetically from native background sediment. Tracer particles were counted and sized via digital microscope, whereas native sediment was sized using a Malvern Mastersizer. Data is stored in netcdf format.
DOI: 10.4121/15057378
title: Dataset accompanying the paper "Tracking fluorescent and ferrimagnetic sediment tracers on an energetic ebb-tidal delta to monitor grain size-selective dispersal"

description: Dataset accompanying paper, "Tracking fluorescent and ferrimagnetic sediment tracers on an energetic ebb-tidal delta to monitor grain size-selective dispersal", published in Ocean & Coastal Management in 2021. We conducted a sediment tracer study on Ameland ebb-tidal delta (the Netherlands) to determine sediment transport patterns as a function of grain size, with the goal of supporting future coastal sand nourishments. Sediment samples were obtained via shipboard Van Veen grab and dried in the laboratory. Fluorescent and ferrimagnetic tracer particles were separated visually and magnetically from native background sediment. Tracer particles were counted and sized via digital microscope, whereas native sediment was sized using a Malvern Mastersizer. Data is stored in netcdf format.
DOI: 10.4121/15082035.v1
title: Data underlying the publication: Exploring the performance of system changes in Dutch broiler production to balance animal welfare, ammonia emissions and particulate matter emissions with farm profitability

description: In this study, the performance of system changes in Dutch broiler production systems was evaluated using a benefit-of-the-doubt composite indicator.<br><br>
DOI: 10.4121/13348004.v1
title: Data underlying the article Characterizing 19 thousand Chinese lakes, ponds and reservoirs by morphometric, climate and sediment characteristics

description: In this study, we used data for analysis, data for validation, models and R-scripts.
DOI: 10.4121/15082035
title: Data underlying the publication: Exploring the performance of system changes in Dutch broiler production to balance animal welfare, ammonia emissions and particulate matter emissions with farm profitability

description: In this study, the performance of system changes in Dutch broiler production systems was evaluated using a benefit-of-the-doubt composite indicator.<br><br>
DOI: 10.4121/13348004
title: Data underlying the article Characterizing 19 thousand Chinese lakes, ponds and reservoirs by morphometric, climate and sediment characteristics

description: In this study, we used data for analysis, data for validation, models and R-scripts.
DOI: 10.4121/15043509.v1
title: Volume evolution of coseismic deposits under rainfall in 2008 Wenchuan earthquake zone.

description: Volume evolution of coseismic deposits under rainfall in four valleys (i.e., Bayi, Wenjia, Sujia and Gaojia valleys)in 2008 Wenchuan earthquake zone. After each rainfall, the removed deposit volume is obtained as shown in attached file.
DOI: 10.4121/15043509
title: Volume evolution of coseismic deposits under rainfall in 2008 Wenchuan earthquake zone.

description: Volume evolution of coseismic deposits under rainfall in four valleys (i.e., Bayi, Wenjia, Sujia and Gaojia valleys)in 2008 Wenchuan earthquake zone. After each rainfall, the removed deposit volume is obtained as shown in attached file.
DOI: 10.4121/15010950
title: Data resulting from the biomass calculation of the test site, Yiliang, Kunming, Yunnan Province

description: The table of calculated Biomass for the test site. And the parameters exacted from GF-3 and ALOS-2 SAR data (such as backscatter and decomposition parameters).
DOI: 10.4121/15010950.v1
title: Data resulting from the biomass calculation of the test site, Yiliang, Kunming, Yunnan Province

description: The table of calculated Biomass for the test site. And the parameters exacted from GF-3 and ALOS-2 SAR data (such as backscatter and decomposition parameters).
DOI: 10.4121/14635635.v1
title: Data underlying the publication: Bridging the gap between lab-scale and commercial dimensions of hollow fiber nanofiltration membranes

description: This dataset is meant as supplementary information to the pubilication: Junker, Moritz A., et al. "Bridging the gap between lab-scale and commercial dimensions of hollow fiber nanofiltration membranes." <i>Journal of Membrane Science</i> 624 (2021): 119100.<br>The dataset contains all relevant data for the study. This includes experimental and theoretical results. More information on the specific files can be found within the README.txt file.
DOI: 10.4121/14635635
title: Data underlying the publication: Bridging the gap between lab-scale and commercial dimensions of hollow fiber nanofiltration membranes

description: This dataset is meant as supplementary information to the pubilication: Junker, Moritz A., et al. "Bridging the gap between lab-scale and commercial dimensions of hollow fiber nanofiltration membranes." <i>Journal of Membrane Science</i> 624 (2021): 119100.<br>The dataset contains all relevant data for the study. This includes experimental and theoretical results. More information on the specific files can be found within the README.txt file.
DOI: 10.4121/15060171.v1
title: Data underlying the research of: A Comprehensive Genome-wide Analysis of Long Non-coding RNA and mRNA Expression Profiles of JAK2V617F-positive Classical Myeloproliferative Neoplasms

description: Aberrant expression of long non-coding RNAs (lncRNAs) is involved in the progression of myeloid neoplasms, but the role of lncRNAs in classical myeloproliferative neoplasms (cMPNs) remains unclear. The present study was conducted to clarify the expression and regulation patterns of lncRNAs in cMPNs, and to explore new potential carcinogenic factor of cMPNs.Bioinformatics analysis of microarray data and qRT-PCR validation were performed to study the expression and regulation signature of differentially expressed lncRNAs (DELs) and related genes (DEGs) in cMPNs.
DOI: 10.4121/15060171
title: Data underlying the research of: A Comprehensive Genome-wide Analysis of Long Non-coding RNA and mRNA Expression Profiles of JAK2V617F-positive Classical Myeloproliferative Neoplasms

description: Aberrant expression of long non-coding RNAs (lncRNAs) is involved in the progression of myeloid neoplasms, but the role of lncRNAs in classical myeloproliferative neoplasms (cMPNs) remains unclear. The present study was conducted to clarify the expression and regulation patterns of lncRNAs in cMPNs, and to explore new potential carcinogenic factor of cMPNs.Bioinformatics analysis of microarray data and qRT-PCR validation were performed to study the expression and regulation signature of differentially expressed lncRNAs (DELs) and related genes (DEGs) in cMPNs.
DOI: 10.4121/15066411.v1
title: Data underlying the research of social perception and well-being of students at the Faculty of Engineering from Sibiu, Romania

description: The data set presents the level of well-being and feedback offered by a group of students, during Covid-19 isolation. The research aims to evaluate the impact produced by the quarantine during the pandemic on a group of students from the Faculty of Engineering in Sibiu, Romania. The changes produced at the level of students' well-being, the characteristics of the feedback provided regarding the teacher's activity, as well as the learning outcomes were studied. Three types of to
DOI: 10.4121/15066411
title: Data underlying the research of social perception and well-being of students at the Faculty of Engineering from Sibiu, Romania

description: The data set presents the level of well-being and feedback offered by a group of students, during Covid-19 isolation. The research aims to evaluate the impact produced by the quarantine during the pandemic on a group of students from the Faculty of Engineering in Sibiu, Romania. The changes produced at the level of students' well-being, the characteristics of the feedback provided regarding the teacher's activity, as well as the learning outcomes were studied. Three types of to
DOI: 10.4121/15066699.v1
title: Data underlying the publication: "Environmental requirements and heterogeneity of rheophilic fish nursery habitats in European lowland rivers: current insights and future challenges"

description: The large-scale degradation of riparian ecotones and of the connectivity between rivers and their floodplains has resulted in a drastic decline of rheophilic fish populations in European temperate lowland rivers. Recent river restoration projects have had variable success in effectively restoring these fish populations. Knowledge on nursery habitat requirements is considered essential for effective population restoration. However, a detailed understanding of the role of habitat heterogeneity in young-of-the-year (YOY) fish population development is limited. Therefore, we carried out a synthesis of the available knowledge on nursery habitat requirements of rheophilic fish species found in European temperate lowland rivers (&lt;200 m elevation). From a total of 603 papers, 77 studies with primary information were selected, containing 390 associations between habitat features and YOY fish. As expected, most studies focused on static components of physical riparian habitat. Generally, YOY fish require habitats of shallow depth (&lt;0.5 m), with slow-flowing water (&lt;0.2 m·s-1), gentle bank slope (&lt;20 degrees), variety in substratum types (fine sand to gravel), relatively warm water, and high food availability. Surprisingly, no clear ontogenetic habitat shifts between larvae and juveniles were found, which may be explained by the limited spatial-temporal resolution of most studies. Since 2011, studies on habitat heterogeneity have increased, but few have explicitly assessed its role in relation to movement patterns of YOY fish for nursery success. Therefore, we recommend that future research focuses on fish movement patterns between habitat patches in heterogeneous (river-floodplain) environments, to increase the knowledge base for effective recovery of rheophilic fish populations.
DOI: 10.4121/15066699
title: Data underlying the publication: "Environmental requirements and heterogeneity of rheophilic fish nursery habitats in European lowland rivers: current insights and future challenges"

description: The large-scale degradation of riparian ecotones and of the connectivity between rivers and their floodplains has resulted in a drastic decline of rheophilic fish populations in European temperate lowland rivers. Recent river restoration projects have had variable success in effectively restoring these fish populations. Knowledge on nursery habitat requirements is considered essential for effective population restoration. However, a detailed understanding of the role of habitat heterogeneity in young-of-the-year (YOY) fish population development is limited. Therefore, we carried out a synthesis of the available knowledge on nursery habitat requirements of rheophilic fish species found in European temperate lowland rivers (&lt;200 m elevation). From a total of 603 papers, 77 studies with primary information were selected, containing 390 associations between habitat features and YOY fish. As expected, most studies focused on static components of physical riparian habitat. Generally, YOY fish require habitats of shallow depth (&lt;0.5 m), with slow-flowing water (&lt;0.2 m·s-1), gentle bank slope (&lt;20 degrees), variety in substratum types (fine sand to gravel), relatively warm water, and high food availability. Surprisingly, no clear ontogenetic habitat shifts between larvae and juveniles were found, which may be explained by the limited spatial-temporal resolution of most studies. Since 2011, studies on habitat heterogeneity have increased, but few have explicitly assessed its role in relation to movement patterns of YOY fish for nursery success. Therefore, we recommend that future research focuses on fish movement patterns between habitat patches in heterogeneous (river-floodplain) environments, to increase the knowledge base for effective recovery of rheophilic fish populations.
DOI: 10.4121/15036186.v1
title: Data underlying Biostimulation is a valuable tool to assess pesticide biodegradation capacity of groundwater microorganisms

description: Groundwater samples were collected at a drinking water abstraction aquifer at two locations, five different depths. Biodegradation of the MPs BAM, MCPP and 2,4-D was assessed in microcosms with groundwater samples, either without amendment, or amended with electron acceptor (nitrate or oxygen) and/or carbon substrate (dissolved organic carbon (DOC)). Oxygen + DOC was the most successful amendment resulting in complete biodegradation of 2,4-D in all microcosms after 42 days. DOC was most likely used as a growth substrate that enhanced co-metabolic 2,4-D degradation with oxygen as electron acceptor.
DOI: 10.4121/15036186
title: Data underlying Biostimulation is a valuable tool to assess pesticide biodegradation capacity of groundwater microorganisms

description: Groundwater samples were collected at a drinking water abstraction aquifer at two locations, five different depths. Biodegradation of the MPs BAM, MCPP and 2,4-D was assessed in microcosms with groundwater samples, either without amendment, or amended with electron acceptor (nitrate or oxygen) and/or carbon substrate (dissolved organic carbon (DOC)). Oxygen + DOC was the most successful amendment resulting in complete biodegradation of 2,4-D in all microcosms after 42 days. DOC was most likely used as a growth substrate that enhanced co-metabolic 2,4-D degradation with oxygen as electron acceptor.
DOI: 10.4121/15040446
title: Data underlying the research of Integration of observed and model derived groundwater levels in landslide threshold models in Rwanda

description: This dataset contains landslide inventory and groundwater level data collected from Rwanda. The groundwater data in this dataset were collected from 2016-2021. The landslide inventory contains data from 2006-2021 and was compiled by J.Uwihirwe following the available standard methods and naming adopted by other landslide researchers e.g Monsieurs et al., 2018; Kirschbaum et al., 2009. These data are being published to serve as assets and/or supplementary material for publication of the paper on "Integration of observed and model derived groundwater levels in landslide threshold models in Rwanda" and the PhD thesis of Judith Uwihirwe. Additionally, these data are being made public for reviewers cross checking and other researchers to use them in their own work.
DOI: 10.4121/14939133.v1
title: Supporting Information for Predicting Fluid Flow Regime, Permeability, and Diffusivity in Mudrocks from Multiscale Pore Characterisation

description: This shared file contains supporting information and supplementary materials related to the manuscript entitled "Predicting Fluid Flow Regime, Permeability, and Diffusivity in Mudrocks from Multiscale Pore Characterisation" by Rezaeyan et al., (2021), submitted to Water Resources Research. This supporting information provides full details of samples, details of the mineralogical and geochemical compositions of the mudrocks, details of the measurements, full experimental and analytical information, and a detailed description of the results.
DOI: 10.4121/14939133
title: Supporting Information for Predicting Fluid Flow Regime, Permeability, and Diffusivity in Mudrocks from Multiscale Pore Characterisation

description: This shared file contains supporting information and supplementary materials related to the manuscript entitled "Predicting Fluid Flow Regime, Permeability, and Diffusivity in Mudrocks from Multiscale Pore Characterisation" by Rezaeyan et al., (2021). This supporting information provides full details of samples, details of the mineralogical and geochemical compositions of the mudrocks, details of the measurements, full experimental and analytical information, and a detailed description of the results.
DOI: 10.4121/14939133.v2
title: Supporting Information for Predicting Fluid Flow Regime, Permeability, and Diffusivity in Mudrocks from Multiscale Pore Characterisation

description: This shared file contains supporting information and supplementary materials related to the manuscript entitled "Predicting Fluid Flow Regime, Permeability, and Diffusivity in Mudrocks from Multiscale Pore Characterisation" by Rezaeyan et al., (2021). This supporting information provides full details of samples, details of the mineralogical and geochemical compositions of the mudrocks, details of the measurements, full experimental and analytical information, and a detailed description of the results.
DOI: 10.4121/15034902.v1
title: Look-up table based on SPaQ measurements to quantify amount of iron in small samples

description: Dataset for creating a look-up table to estimate amount of magnetic tracer (ug) based on their magnetic signal (uV). <br>Also included a README file for 'SPaQ measurements sample series'. Please read before using the data in the .CSV file.<br>The data was acquired with the SPaQ (DOI: doi.org/10.1063/1.5039150). The measured magnetic tracers are Sienna+ and Magtrace, both SPIONs. Currently, Magtrace is permitted to be used in human patients for the sentinel lymph node procedure. This look-up table can be used to (accurately) estimate the amount of iron inside a lymph node when measured with the SPaQ.
DOI: 10.4121/15034902
title: Look-up table based on SPaQ measurements to quantify amount of iron in small samples

description: Dataset for creating a look-up table to estimate amount of magnetic tracer (ug) based on their magnetic signal (uV). <br>Also included a README file for 'SPaQ measurements sample series'. Please read before using the data in the .CSV file.<br>The data was acquired with the SPaQ (DOI: doi.org/10.1063/1.5039150). The measured magnetic tracers are Sienna+ and Magtrace, both SPIONs. Currently, Magtrace is permitted to be used in human patients for the sentinel lymph node procedure. This look-up table can be used to (accurately) estimate the amount of iron inside a lymph node when measured with the SPaQ.
DOI: 10.4121/14946021.v1
title: Data presented in the paper: Salt marsh establishment in poorly consolidated muddy systems: effects of surface drainage, elevation and plant age

description: This data set contains the survival of <i>Spartina anglica</i> seedlings (with different ages), the survival, shoot numbers, plant height and biomass of <i>S. anglica</i> tussocks of a field mega-marsh organ marsh experiment that been carried out in Perkpolder, the Netherlands in 2016 and 2018. This study investigated the impact of surface drainage and elevation relative to mean sea-level on <i>i)</i> the survival of <i>S. anglica</i> seedlings from three different age classes: 1-year, 3-month and 1-week; and <i>ii)</i> the growth performance of mature <i>S. anglica</i> marsh tussocks.
DOI: 10.4121/14946021
title: Data presented in the paper: Salt marsh establishment in poorly consolidated muddy systems: effects of surface drainage, elevation and plant age

description: This data set contains the survival of <i>Spartina anglica</i> seedlings (with different ages), the survival, shoot numbers, plant height and biomass of <i>S. anglica</i> tussocks of a field mega-marsh organ marsh experiment that been carried out in Perkpolder, the Netherlands in 2016 and 2018. This study investigated the impact of surface drainage and elevation relative to mean sea-level on <i>i)</i> the survival of <i>S. anglica</i> seedlings from three different age classes: 1-year, 3-month and 1-week; and <i>ii)</i> the growth performance of mature <i>S. anglica</i> marsh tussocks.
DOI: 10.4121/15022077
title: Data underlying the research on: Spatial spillover effects of capital factor agglomeration on the urban industrial structure upgrading in China

description: It is the statistical data of 284 prefecture-level cities in China from 2008 to 2017. It can be used to analyze the macro problems of prefecture-level cities.
DOI: 10.4121/14938170.v1
title: Dataset on induced emotions when listening to music

description: This dataset was generated as part of a master thesis, titled "Music Playlist Generation for Emotion Regulation: A Functional Component in the Individualized Music Intervention for Persons with Dementia". The full report can be found in the references and fully described the dataset and the experiment from which it stems.<br>A quick summary of the experiment and data:<br><br><b>The experiment</b>The experiment was conducted online. We had 22 participants who finished the experiment. The participants first answered some background questions. They then listened to four songs while answering some question relating to the songs. Before continuing to the next song they reported on their emotional state (through the AffectButton). After the four songs they answered some final questions.<br><b>The data</b>The data is divided into two comma separated value files. experimentData and songData. experimentData contains the experiment-level data for each participant. This includes the answers to the background questions and the reports on emotional states for example. songData concerns the song-level data and contains for example the answers to the questions that were asked while listening to a song. A full overview of all the columns and their datatypes is given in the thesis report linked in the references.<br><br>