cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28837583.v1
title: The development of urban sky gardens in the river valley city of Lanzhou, China.

description: Background and aims: Urban sky garden is critical to the improvement of human well-being and health, the distribution, area and accessibility of urban sky garden has received widespread concern. Understanding the distribution characteristics and influencing factors of green roofs is of great significance for the precise allocation of vertical space in the stock development phase. Methods: Taking the four central urban districts of Lanzhou as study region, a GIS database of 508 rooftop gardens was established by identifying high-definition image maps and on-site investigations. The distribution characteristics and influencing factors were analyzed from different aspects such as building height, ground greenery area, population density, building density and plot ratio, etc.Key Results: The distribution of sky garden in Lanzhou has spatial heterogeneity. Most sky gardens are distributed along the Yellow River. Old towns have higher sky gardens than new towns. 61% of sky gardens were located in Chengguan District, 82% were roof gardens, 73% were residential buildings and most were low buildings. 98% of sky gardens were one floor and 97% were non-open. 96% were in high density plot and had low green plot ratio. Urban sky garden areas were negatively correlated with building height, building storey, ground greenery area, ground greenery ratio and green plot ratio in sky gardens.Conclusions: Our study suggests that sky gardens serve as a complement to ground green spaces in Lanzhou. However, the utilization rate of rooftops is relatively low, and the sky garden development of different types of buildings is not balanced. Future research on the enhancement of urban green spaces urgently needs to shift from two-dimensional to three-dimensional approaches and integrate vertical space. This is especially important for enhancing the accessibility, equity and diversity of rooftop gardens.
DOI: 10.6084/m9.figshare.12204431.v1
title: Poverty threat on attentional bias

description: utilized to study about Poverty Stereotype Threat effects on Attentional Bias toward Poverty- and Wealth-related Stimuli in Individuals from Different Income Level Families
DOI: 10.6084/m9.figshare.14401009.v1
title: Pegmatite magmatic evolution and rare metal mineralization of the Dahongliutan pegmatite field, Western Kunlun Orogen: Constraints from the B isotopic composition and mineral-chemistry

description: The Dahongliutan rare-metal pegmatite deposit, associated with the pegmatite dikes hosted by Dahongliutan pluton and metasedimentary rocks, is a new discovered Li–Be deposit in the the West Kunlun orogen, Northwest China. The Dahongliutan pegmatite is a classic and typical example of a highly fractionated Li-Ce-Ta (LCT) type pegmatite, with distinct regional zonation composed of well-developed garnet-tourmaline-microcline (GTM), beryl-tourmaline-muscovite (BTM) and spodumene-albite (SA) pegmatites from the barren core inward to outer zone. Detailed field studies, together with B-isotope studies of tourmaline and the chemistry of feldspar, muscovite and tourmaline, were undertaken to investigate the differentiation processes in a pegmatite magma and the different mineralizing episodes of the Dahongliutan rare-metal pegmatite deposit. Alkali metal fractionation trends (Rb, Cs and K/Rb) in the pegmatitic K-feldspar and muscovite define a primitive to evolved magmatic evolution. From low to high degrees of evolution, the mineralization stages of Dahongliutan pegmatite field are metal barren in centre, Be-rich in the intermediate and Li-rich in the outer zone. Furthermore, besides the magmatic tourmaline in the GTM pegmatite dikes, the fine-grained euhedral magmatic BTM-I type and subhedral to anhedral coarse-grained magmatic-hydrothermal BTM-II type in the BTM pegmatite dikes have been identified. The average δ<sup>11</sup>B values of the magmatic tourmalines in the GTM-type is −8.82, BTM-I type is −8.53‰, and BTM-II type is −7.85‰. Combined with petrography and chemical data, we suggest that the Dahongliutan pegmatite dikes were derived from metasedimentary source within the continental crust and the BTM-II type tourmaline is correlated with separation of an immiscible B-rich fluid during the magmatic-hydrothermal evolution. Consequently, highly fractional crystallization, albite alteration and liquid immiscibility were the main factors controlling the spatial and temporal decoupling of rare element mineralization in the Dahongliutan pegmatite deposit.
DOI: 10.6084/m9.figshare.27316113.v1
title: Tropical cyclone impacts in coastal marine ecosystems

description: The dataset contains a half century of historical variability in North Atlantic tropical cyclone activity, retrieved from the publicly available IBTrACS database, and published reports of tropical cyclone impacts in coastal marine ecosystems. The dataset contains 109 storm impact reports.
DOI: 10.6084/m9.figshare.28767278.v1
title: Available heavy metal data of soil environment

description: <pre>Available heavy metal data of soil environment.</pre>
DOI: 10.6084/m9.figshare.7058030.v1
title: Molecular dynamics trajectory of I-FABP for testing and benchmarking solvent dynamics analysis

description: The trajectory is a short MD run of I-FABP (intestinal fatty acid binding protein) in water.<br><br>It was simulated in CHARMM for 500 ps with a 2 fs timestep. Frames were saved every 1 ps and the trajectory was RMSD-fitted to the protein.<br><br>There are 500 frames in the trajectory.<br>It is used as a test case for the hop package https://github.com/Becksteinlab/hop.<br>
DOI: 10.6084/m9.figshare.7895771.v1
title: gVCF_HG03225

description: 1000 Genomes gVCF mapped to hs37d5 for HG03225. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.25405/data.ncl.14604354.v4
title: Sentiment (supervised polarity classification) and topic analysis of LastQuake app user's comments - Aegean 2020 earthquake

description: This database contains the sentiment analysis (SA) and topic supervised classification of the comments posted by LastQuake app users related to the 30th October 2020 Aegean earthquake. LastQuake app is a crowdsource-based earthquake information app that allows eyewitnesses to share information about the earthquakes that they felt, combined with seismic data. This app was developed by the European-Mediterranean Seismological Centre (EMSC). Attributes and data contained in the database are: § eq_evid : Number of the earthquake the comment is associated with § eq_mag : magnitude of the event § eq_t0 : Origin time (UTC) § intensity: felt report intensity (as before leaving a comment users must leave a felt report) § epidist : distance from the event of the comment, in km § dt : response time from the origin time of the associated event, in seconds § rate_pos : number of positive rates * § rate_neg : number of negative rates* § device : device from which the comment was left (desktop, mobile ou app) § comm_valid : 0 or 1 depending on if we validated the comment or not. We invalidate comments when we consider them inappropriate (violence, insults,...) § language: Original language on which the comment was written § polarity: Polarity on which the comment is classified, i.e. positive, negative, neutral § topic: Main topic addressed in the comment, i.e. building damages, tsunami effects, geotechnical effects, lifelines affected, emergency response, solidarity messages, preparedness, seismic information, intensity and unrealted. § comment: comment posted by LastQuake app user translated to English<br>
DOI: 10.6084/m9.figshare.1541143.v1
title: Hand Dominance based on Gender

description: On September 14, 2015, 22 individuals both male and female were surveyed at York University. Among the 22 individuals surveyed, 11 males and 11 females were asked whether their dominate hand was left or right. This experiment was put in place to determine if there was a variation between hand dominance among the genders. The choice of ambidextrous hand dominance was excluded, due to the reasoning that the ambidextrous individuals have a preferred dominant hand, and are not equally skilled with both hands.
DOI: 10.6084/m9.figshare.27061378.v1
title: data7414foursubjects.xlsx

description: This is an Excel data for analysis on the topic Evaluation of the Author H-Index in Predicting the Field Weighted Citation Impact for Research Articles from Different Disciplines: A Predictive Accuracy Study.
DOI: 10.17632/6zxbyxzwkp
title: Conjunto de datos del artículo "Sentido de coherencia en universitarios: recurso para el cuidado en tiempos de pandemia"

description: Conjunto de datos relacionados con los hallazgos reportados del manuscrito titulado "Sentido de coherencia en universitarios: recurso para el cuidado en tiempos de pandemia", que da cuenta de las características sociodemográficas de la población participante y las respuestas obtenidas en el cuestionario.
DOI: 10.6084/m9.figshare.22080935.v1
title: kmflow_sampled_data_irregnew

description: Datasets for the paper "A Physics-informed Diffusion Model for High-fidelity Flow Field Reconstruction". This file contains the low-res CFD data measured at random grid locations used as the input data for 8x super-resolution.
DOI: 10.6084/m9.figshare.24560584.v2
title: Sentiment Analysis Test Dataset Created from Two COVID-19 Surveys: National Institutes of Health (NIH) and Stanford University

description: Two COVID-19 surveys were used to create the <b>test dataset</b>, both collected by teams from the National Institutes of Health (NIH) and Stanford University. The collected data were intended to assess the general topics experienced by participants during the pandemic lockdown. The test dataset comprises a total of 1,000 randomly chosen sentences, with 500 sentences selected from each survey. Each set was annotated by three separate and independent annotators. The annotators were instructed to assess the polarity of each sentence on a scale of -1 (negative), 0 (neutral), or 1 (positive). We then followed a three-step procedure to determine the final labels. First, if all three annotators agreed on a label (full agreement), that label was accepted. Second, if two out of the three agreed on a label (partial agreement), that label was also accepted. Third, if there was no agreement, the label was set as neutral (no agreement).
DOI: 10.6084/m9.figshare.25521904.v1
title: health indicator data

description: This dataset is used for mechanical system health indicator validation.
DOI: 10.6084/m9.figshare.27054268.v1
title: De novo transcriptome assembly of the Perna viridis: A novel invertebrate model for ecotoxicological studies

description: Mussels, particularly Perna viridis, are vital sentinel species for toxicology and biomonitoring in environmental health. This species plays a crucial role in aquaculture and significantly impacts the fisheries sector. Despite the ecological and economic importance of this species, its omics resources are still scarce. We generated a gill-specific reference transcriptome for Perna viridis using 292 million short Illumina reads from eight pooled gill tissue samples isolated from twenty-four individuals. The Trinity assembler generated 438,842 transcripts with an N50 of 1,958 bp. Several databases were employed in the annotation process. This dataset greatly expands the omics resources of bivalve databases and advances our knowledge of transcriptomics, molecular biology, environmental toxicology, and cancer research.
DOI: 10.6084/m9.figshare.6130850.v1
title: MatthisYatesHayhoe2018_DataAndCodeRepository.zip

description: This zip file contains the raw and post-processed data from "Matthis, Yates, and Hayhoe (2018), Gaze and the visual control of foot placement in natural terrain" published in Current Biology in 2018.<br><br>This repository contains the raw and post-processed data from that study, as well as the Matlab code necessary to generate all of the figures from the manuscript from the raw data. <br><br>For details and instructions, see the readme file:<br>https://figshare.com/account/projects/31001/articles/6127775<br><br> FYI – the repository will also live here for the foreseeable future – Go here to browse the files without needing to download the whole giant zip file - https://www.dropbox.com/sh/zml8t0mrylu3ds2/AAAdzDIvTUsEBrDNTUqgMrWra<br>NOTE - Trying to uncompress this file with Window Explorere might give you an error claiming that "this zip file is invalid." You may have more luck using a program like 7zip to decompress it.
DOI: 10.6084/m9.figshare.6168803.v2
title: New algorithm for predicting gastroesophageal varices

description: We retrospectively analyzed 659 patients with chronic hepatitis B virus(HBV) infection and 410 patients in our medical center, from October, 2015 to December, 2017. We set 659 CHB patients as training set, and 410 patients with other chronic liver diseases as validation set. Logistic regression analysis between the conventional markers and the performances of GOV detected by endoscopy were assessed. A new algorithm for diagnosing GOV was established and its sensitivity and specificity for predicting the varices was verified.
DOI: 10.15468/dl.ac4ygj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9096 1.1987,44.9648 1.2321,44.9648 1.8496,35.9648 1.8496,35.9648 -7.1504,40.3029 -7.1504,40.4263 -6.8134,40.0733 -6.4249,39.9535 -5.9102,40.3587 -5.2718,40.3515 -4.7573,40.0702 -4.4392,40.3811 -3.7186,40.7402 -3.0348,41.8195 -2.1723,43.8399 0.2902,44.9096 1.1987))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013437-250525065834625/datasets/export for details.
DOI: 10.17028/rd.lboro.12585179.v2
title: Energy consumption of SWFG in Beijing, CN

description: Energy consumption of Smart Water-filled Glass or SWFG (water-filled glass with changing transparency) in Beijing, CN<br>Version 1.0: Comparison of SWFG with 6 Base Cases (one electrochromic case)<br>Version 2.0: Comparison of SWFG with 7 Base Cases (two electrochromic cases: 2 settings and 4 settings)
DOI: 10.17632/fpc6r9km5d
title: Banana Starch and Banana Starch Nanoparticles data

description: data related to the structural features and thermal characteristics of starches from four varieties banana, likewise, we present the synthesis and characterization of starch nanoparticles from those starches. Data shows the structure of the starch granule and the nanoparticles are formed through XRD spectroscopy.
DOI: 10.6084/m9.figshare.12888350.v1
title: Survey dataset - SALSA WP3 (Small farms, small food businesses and sustainable food and nutrition security)

description: Survey of 892 small-scale farm households, which was conducted in 30 regions during May to August 2017, of which 25 in 14 European countries, and 5 in African countries.<br>The characterization of the reference regions can be see here: http://www.salsa.uevora.pt/reference-regions/<br>This data set formed the basis for a set of analyzes published in a SI in the scientific journal Global Food Security. Papers already published:<br>Czekaj, M., Adamsone-Fiskovica, A., Tyran, E., Kilis, E., 2020. Small farms’ resilience strategies to face economic, social, and environmental disturbances in selected regions in Poland and Latvia, Global Food Security, 26, 100416.<br>Guarín, A., Rivera, M., Pinto-Correia, T., Guiomar, N., Šūmane, S., Moreno-Pérez, O. M., 2020. A new typology of small farms in Europe. Global Food Security, 26, 100389.<br>Rivera, M., Guarín, A., Pinto-Correia, T., Almaas, H., Mur, L.A., Burns, V., Czekaj, M., Ellis, R., Galli, F., Grivins, M., Hernández, P., Karanikolas, P., Prosperi, P., Zamora, P.S., 2020. Assessing the role of small farms in regional food systems in Europe: evidence from a comparative study. Global Food Security 26: 100417.<br>Żmija, K., Fortes, A., Tia, M.N., Šūmane, S., Ayambila, S.N., Żmija, D., Satoła, Ł., Sutherland, L.-A., 2020. Small farming and generational renewal in the context of food security challenges. Global Food Security, 26, 100412.<br><br><br>
DOI: 10.17632/8ch6z2tncv
title: Data for: Correlation and causation between the intestinal microbiota and male morphotypes in the giant freshwater prawn Macrobrachium rosenbergii
DOI: 10.6084/m9.figshare.5127295.v1
title: Supplementary Material for: Novel Deletion of <b><i>SERPINF1</i></b> Causes Autosomal Recessive Osteogenesis Imperfecta Type VI in Two Brazilian Families

description: Autosomal recessive<b> </b>osteogenesis imperfecta (OI) accounts for 10% of all OI cases, and, currently, mutations in 10 genes <i>(CRTAP</i>, <i>LEPRE1</i>, <i>PPIB</i>, <i>SERPINH1</i>, <i>FKBP10</i>, <i>SERPINF1, SP7</i>, <i>BMP1, TMEM38B, </i>and<i> WNT1)</i> are known to be responsible for this form of the disease. PEDF is a secreted glycoprotein of the serpin superfamily that maintains bone homeostasis and regulates osteoid mineralization, and it is encoded by <i>SERPINF1</i>, currently associated with OI type VI (MIM 172860). Here, we report a consanguineous Brazilian family in which multiple individuals from at least 4 generations are affected with a severe form of OI, and we also report an unrelated individual from the same small city in Brazil with a similar but more severe phenotype. In both families the same homozygous <i>SERPINF1</i> 19-bp deletion was identified which is not known in the literature yet. We described intra- and interfamilial clinical and radiological phenotypic variability of OI type VI caused by the same homozygous <i>SERPINF1</i> 19-bp deletion and suggest a founder effect. Furthermore, the <i>SERPINF1</i> genotypes/phenotypes reported so far in the literature are reviewed.
DOI: 10.6084/m9.figshare.7717640.v1
title: Extended data - Recovery of amphibian, reptile, bird and mammal diversity during secondary forest succession in the tropics

description: This is the data related with the manuscript "Recovery of amphibian, reptile, bird and mammal diversity during secondary forest succession in the tropics", submitted to Oikos.<br>The files include code of the analysis and figures for the manuscript submitted to Oikos. This code was created by Orlando Acevedo-Charry, based in several "bloggers" and resource online, and with the encouragement of Zuania Colon and advise of Mitch Aide. Thank you so much!! There are 16 scripts for different analysis-figures. For each script there is included the packages used. Each script will run with the file "MainData.csv", but the "figure script" run with the results of the bootstraps (csv). Have fun!<br>
DOI: 10.17632/y4d9rzrnr6
title: Specific macrophage RhoA targeting (SMART) CRISPR-Cas9 for mitigating osteoclastogenesis-induced joint damage in inflammatory arthritis

description: This is a raw data and supplemental information of the manuscript "Specific macrophage RhoA targeting (SMART) CRISPR-Cas9 for mitigating osteoclastogenesis-induced joint damage in inflammatory arthritis"
DOI: 10.6084/m9.figshare.5950339.v2
title: AmpliconArchitect_reconstructions

description: This dataset contains the AmpliconArchitect (https://github.com/virajbdeshpande/AmpliconArchitect) output for reconstruction of amplicons from the following samples:<br>1) 117 samples in "sample set 1" https://www.ncbi.nlm.nih.gov/bioproject/PRJNA338012/<br>2) 18 samples which replicates of samples in sample set 1<br>3) 67 cervical samples from TCGA with HPV infection<br>4) Amplicons from sample set 1 organized by various tags including: a) MultCluster, b) MultiChrom c) simple_cycles and d) BFB<br>5) 7 samples reported by L'abbate et al 2014<br>6) 3 samples reported by Sanborn et al 2013 + 1 sample reported by Oesper et al 2012<br>7) 9 samples reported by Akagi et al 2013.<br>1 summary file for each sample:_summary.txt - Summary of all amplicons reported in the sample.<br>4 files per amplicon:graph.txt file: Breakpoint graph and copy numberscycles.txt file: Simple cycles in amplicon.png and .pdf: SV view of reconstruction.<br>For viral amplicons from (3) and (7), 2 additional files (png and pdf) for each human interval connected to the viral genome.<br>.png and .cycles.txt files may be uploaded to http://genomequery.ucsd.edu:8800 for visualization and merging of cycles
DOI: 10.6084/m9.figshare.16682422.v1
title: COVID-19 and non-COVID-19 pneumonia Dataset

description: This is a sample dataset of COVID-19 and non-COVID-19 pneumonia. It is from the Khorshid COVID Cohort (KCC) study. It is related to the following published paper on "Frontiers in Medicine":<br><br>Marateb HR, Ziaei Nezhad F, Mohebian MR, Sami R,Haghjooy Javanmard S, Dehghan Niri F, Akafzadeh-Savari M, Mansourian M, Mañanas MA, Wolkewitz M and Binder H (2021) Automatic Classification BetweenCOVID-19 and Non-COVID-19 Pneumonia Using Symptoms,Comorbidities, and Laboratory Findings: The Khorshid COVID Cohort Study. Front. Med. 8:768467.doi: 10.3389/fmed.2021.768467https://www.frontiersin.org/articles/10.3389/fmed.2021.768467/full<br><br>Please cite the above reference when the dataset is used.<br><br>
DOI: 10.6084/m9.figshare.26046211.v1
title: Emotion recognition research data

description: Altogether, we obtained 5569 valence and arousal scores from 1127 respondents. There were 2068 scores from 457 respondents in the year 2021 and 3208 from 668 respondents in the year 2022
DOI: 10.17632/424sd4fhj8
title: CHICOM: Code for comparing weighted or unweighted histograms in Fortran-77, C++, R and Python

description: Improved a program that calculates test statistics to compare weighted and unweighted histograms. The program is presented in Fortran-77, C++, R and Python. The code calculates test statistics for histograms with either normalized or unnormalized weights of events. The previous version of this program (AEKE_v1_0) may be found at http://dx.doi.org/10.1016/j.cpc.2011.08.014.
DOI: 10.6084/m9.figshare.24417268.v1
title: Raw qPCR data

description: qPCR data generated for the investigation into how water chemistry impacts the rate of eDNA degradation.
DOI: 10.6084/m9.figshare.27322995.v1
title: N addition & plant biomass

description: Anthropogenic nitrogen (N) deposition can alleviate N limitation and stimulate plant growth in many terrestrial ecosystems. While theoretical models often emphasize phosphorus (P) limitations as a constraint on this positive N effect, the impact of N-induced magnesium (Mg) and calcium (Ca) deficits due to soil acidification has been largely overlooked. In this study, we synthesized data from 243 experiments across diverse terrestrial ecosystems and found that the effect of N addition on aboveground biomass (AGB) was strongly dependent on soil pH. N addition had a neutral effect on AGB at low pH (≤ 4.5) but resulted in significant positive effects in soils with medium (4.5-7.5) and high pH (&gt; 7.5). In contrast, belowground biomass (BGB) responses to N addition were independent of soil pH, leading to asymmetric increases in AGB and BGB. These variations in biomass accumulation across pH levels were primarily explained by changes in foliar Mg and Ca concentrations, which were negatively affected by N addition in low-pH soils but remained stable in medium and high-pH soils. Notably, these trends were not influenced by plant P status. Our findings underscore the critical role of Mg and Ca in modulating plant responses to N fertilization, providing new insights for improving Earth system models and better predicting climate-biosphere feedback.
DOI: 10.17605/osf.io/q7m9d
title: Data