cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25550/v8p
title: microCT - Bone Tissue of a Wnt1-Cre; Tgfbr2flfl; Alk5fl+ mouse at E18.5

description: This dataset includes 1 microCT scan of the skull of a Wnt1-Cre; Tgfbr2flfl; Alk5fl+ mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v9c
title: microCT - Bone Tissue of Smad4flfl Control mouse at E18.5

description: Mouse ID: DH214 This dataset includes 1 microCT scan of the skull of a Smad4fl/fl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vac
title: Ectoderm/Mesenchyme mRNA expression by microarray

description: Ectoderm/Mesenchyme mRNA expression by microarray
DOI: 10.25550/vc2
title: microCT - Bone Tissue of Smad4flfl Control mouse at E16.5

description: This dataset includes 1 microCT scan of the skull of a Smad4fl/fl mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vec
title: Micro-CT images of adult mouse skulls, Collaborative Cross NOD x C57BL6

description: The dataset consists of a set of images for 19 mice with one parent from the NOD strain, and the other from the C57BL6 strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/vey
title: microCT - Bone Tissue of Msx1 control at P0

description: This dataset includes 1 microCT scan of the skull of an Msx1 control mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vfy
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm622

description: See link to the data preparation protocols for this study in the Additional Information section **Enhancer location:** Mouse genome mm9, chr5:112030286-112031759 **Name:** mCF171 **Vista Enhancer ID:** mm622 **Nearest craniofacial gene or locus:** Mn1 **Enhancer expression:** positive **Tissues where active:** branchial arch **Comment on OPT files:** This data set includes the following: * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT)Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ]
DOI: 10.25550/vnc
title: Micro-CT images of adult mouse skulls, Collaborative Cross NZO x NOD

description: The dataset consists of a set of images for 7 mice with one parent from the NZO strain and the other parent from the NOD strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/vr6
title: microCT - Bone Tissue of Tgfbr2fl/+ control mouse at E16.5

description: Mouse ID: JI312 This dataset includes microCT scans of the skull of Tgfbr2fl/+ control mice at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vxj
title: Wnt GFP Twist1 Wnt1 Dapi BF HCR Right Side Stiched

description: HCR images of a mouse at E9.5 - Right Stitched
DOI: 10.5281/zenodo.3435252
title: Raw Data from 10th Sept 2019

description: Raw data from 10th Sept 2019. Please see log for the details.
DOI: 10.5281/zenodo.3435253
title: Raw Data from 10th Sept 2019

description: Raw data from 10th Sept 2019. Please see log for the details.
DOI: 10.25550/2660
title: ChIP-seq and RNA-seq of mouse e13.5 nose

description: We have generated histone ChIP-seq libraries for dissected mouse nasal tissue. We performed ChIP-seq with markers of active chromatin (H3K27ac, H3K4me1) and repressive chromatin (H3K27me3). For each tissue we also generated a ChIP input library and total RNA-seq library. This is part of a series of experiments including parallel collection of dissected craniofacial tissues including maxilla, mandible and nose, and murine stages including e11.5, e13.5 and e15.5.
DOI: 10.25550/tp8
title: CranioGUI

description: See link to Craniofacial Analysis tools in the Additional Information section.
DOI: 10.25550/tq2
title: Mouse E9.5 HCR images

description: a collection of HCR images of mice at E9.5. Images random and mostly obtained during troubleshooting.
DOI: 10.25550/tqg
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm383

description: See link to the data preparation protocols for this study in the Additional Information section **Enhancer location:** Mouse genome mm9, chr16:15194506-15196207 **Name:** mCF69 **Vista Enhancer ID:** mm383 **Nearest craniofacial gene or locus:** Snai2 **Enhancer expression:** positive **Tissues where active:** branchial arch, nose, facial mesenchyme, other **Comment on OPT files:** none This data set includes the following: * 4 files in .tgz format. Each of these corresponds to one .avi file and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ]
DOI: 10.25550/trc
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm621

description: See link to the data preparation protocols for this study in the Additional Information section The results are also presented as tracks on the Genome Browser (see links in the Additional Information section) **Enhancer location:** Mouse genome mm9, chr5:112006329-112007316 **Name:** mCF170 **Vista Enhancer ID:** mm621 **Nearest craniofacial gene or locus:** Mn1 **Enhancer expression:** positive **Tissues where active:** branchial arch **Comment on OPT files:** This data set includes the following: * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT)Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ]
DOI: 10.25550/tre
title: microCT - Bone Tissue of C57BL6J Mouse at E16.5

description: Mouse ID: JI232 This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tx8
title: microCT - Soft Tissue of a Wnt1-Cre; Tgfbr2fl/fl mouse at E13.5

description: Mouse ID: AS338 This dataset includes microCT scans of the skull of a Wnt1-Cre; Tgfbr2fl/fl mouse at E13.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/txj
title: microCT - Bone Tissue of Wnt1-Cre; Tgfbr2flfl Mouse at E18.5

description: This dataset includes 1 microCT scan of the skull of a Wnt1-Cre; Tgfbr2flfl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tz6
title: microCT - Soft Tissue of a Ctgf+/+ Control mouse at E14.5

description: Mouse ID: CP261 This dataset includes microCT scans of the skull of a Ctgf+/+ Control mouse at E14.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v02
title: microCT - Soft Tissue of Ctgf-- mouse at E14.5

description: Mouse ID: CP309 This dataset includes microCT scans of the skull of Ctgf-- mice at E14.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v3a
title: Gene expression profiling of the tongue in mice with a conditional inactivation of Tgfbr2 at embryonic day E13.5

description: We performed global gene expression analyses of the tongue in Wnt1-Cre;Tgfbr2^fl/fl and Tgfbr2^fl/fl control mice at embryonic day E13.5. Total RNA samples (1 ug per sample) were converted into biotin-labeled cRNA using the Enzo BioArray Terminal Labeling Kit with Biotin-ddUTP and standard protocols recommended by Affymetrix (Santa Clara, CA). Fragmented cDNA was applied to GeneChip® Mouse Genome 430 2.0 Arrays (Affymetrix) that contain probe sets designed to detect over 39000 transcripts. Microarrays were hybridized, processed and scanned, as previously described using manufacturers recommended conditions.
DOI: 10.25550/v64
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm385

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr14:46843672-46844634 **Name:** mCF71 **Vista Enhancer ID:** mm385 **Nearest craniofacial gene or locus:** BMP4 **Enhancer expression:** negative This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF71metadata.txt from the External Reference section
DOI: 10.25550/v6g
title: microCT - Head soft tissue of CTGF +/+ control mouse at P0

description: This dataset includes microCT scans of the head tissue of three mice used as CTGF +/+ controls at stage P0. The scans are in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vce
title: Gene expression RNA-Seq - mouse E14.5 Wild Type Posterior Oral Palate

description: This data set contains BAM RNA-Seq data for the Posterior Oral region of the palatal shelves at the E14.5 time-point in the developing mouse. Wild-type CD-1 outbred mice were used in this experiment. For each different region: Anterior Medial Palate - From the anterior region of the palatal shelf (closer to the front of the face). Also closer to the center of the palatal shelves (closer to the Medial-Edge Epithelia). Posterior Medial Palate - From the posterior region of the palatal shelf (closer to the hind-brain). Also located closer to the center of the palatal shelves (closer to the MEE). Anterior Lateral Palate - From the anterior region of the palatal shelf (closer to the front of the face). The lateral region located further from the MEE. Posterior Lateral Palate - From the posterior region of the palatal shelf (closer to the hind-brain). The lateral region located further from the MEE. Anterior Nasal Palate - From the anterior region of the palatal shelf (closer to the front of the face). The nasal half of the palate located closer to the nose. Posterior Nasal Palate - From the posterior region of the palatal shelf (closer to the hind-brain). The nasal half of the palate located closer to the nose. Anterior Oral Palate - From the anterior region of the palatal shelf (closer to the front of the face). The oral half of the palate located closer to the tongue. Posterior Oral Palate - From the posterior region of the palatal shelf (closer to the hind-brain). The oral half of the palate located closer to the tongue. There are 3 replicates for each region collected (four for the ant. nasal region). Regions were isolated using Laser Capture Microdissection with the Arcturus Veritas instrument, then RNA-purified and processed for RNA Seq. The RNA-Seq was performed using 50 bp single-end reads (at least 20 million reads). Sequencing was performed on the Illumina HiSeq 2500.
DOI: 10.25550/vd8
title: microCT - Skull bones of CTGF +/+ control mouse at P0

description: This dataset contains microCT scans of skull bones of 10 control mice at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vdt
title: microMRI images of skulls of wild type mice at P0

description: microMRI images of skulls of unaffected wild type mice at P0. The dataset contains 3-D images in niftii format for each of 3 mice.
DOI: 10.25550/vha
title: Micro-CT images of adult mouse skulls, Collaborative Cross CAST x CAST

description: The dataset consists of a set of images for 3 mice with both parents from the CAST strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/vky
title: Micro-CT images of adult mouse skulls, Collaborative Cross 129S1 x CAST

description: The dataset consists of a set of images for 9 mice with one parent from the 129S1 strain, and the other from the CAST strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/1-4xhy
title: Activity of predicted human neural crest enhancer 1.35Mb upstream of SOX9 in transgenic mouse embryos.

description: Sox9-E1.35Mb shows no replicable enhancer activity at either E9.5 or E11.5.
DOI: 10.25550/tnj
title: microCT - Skull of K14-Cre;Tgfbr2fl/fl mouse at P0

description: Mouse ID: JI078 This dataset includes a microCT scan of the skull of a K14-Cre;Tgfbr2fl/fl mouse at stage P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tpw
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm423

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr2:4508633-4509808 **Name:** mCF109 **Vista Enhancer ID:** mm423 **Nearest craniofacial gene or locus:** None **Enhancer expression:** positive **Tissues where active:** branchial arch, facial mesenchyme, nose, limbs **Comment on OPT files:** no clip file This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * 3 movie (.avi) files: 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. See links in External Referece section to download the following movie files: Coronal plane movie, Sagittal plane movie, Transverse plane movie * 3 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ] * Tested element.txt: Download the text file mCF109metadata.txt from the External Reference section .
DOI: 10.25550/tx0
title: Micro-CT images of adult mouse skulls, Collaborative Cross C57BL6 x 129S1

description: The dataset consists of a set of images for 22 mice with one parent from the C57BL6 strain and the other from the 129S1 strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/tz4
title: microCT - Soft Tissue of a C57BL6J mouse at E17.5

description: Mouse ID: JI206 This dataset includes a microCT scan of the skull of a C57BL6J mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tzr
title: microCT - Bone Tissue of an Msx1-/- mouse at E17.5

description: Mouse ID: AH242 This dataset includes microCT scans of the skull of an Msx1-/- mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v0w
title: microCT - Bone Tissue of Smad4 fl/fl mouse at P0

description: Mouse ID: DH115 This dataset includes microCT scans of the skull of a Smad4 fl/fl mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v12
title: Micro-CT images of adult mouse skulls, Collaborative Cross NOD x A/J

description: The dataset consists of a set of images for 20 mice with one parent from the NOD strain, and the other from the A/J strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/v16
title: microCT - Soft Tissue of Tgfbr2 control mouse at E16.5

description: Mouse ID: JI305 This dataset includes microCT scans of the skull of a Tgfbr2 control mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v4t
title: microCT - Bone Tissue of an Msx1+/+ mouse at E17.5

description: Mouse ID: AH241 This dataset includes microCT scans of the skull of an Msx1+/+ mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v8w
title: microCT - Bone Tissue of Fgfr2 Control Mouse at P0

description: Mouse ID: ZZ263 This dataset includes 1 microCT scan of the skull of an Fgfr2 Control mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v9e
title: microCT - Bone Tissue of Tgfbr2fl/+ Control mouse at E18.5

description: This dataset includes microCT scans of the skulls of a Tgfbr2fl/+ Control mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vc4
title: microCT - Soft Tissue of CTGF control mice at E14.5

description: This dataset includes microCT scans of the skulls of CTGF control mice at E14.5 . The scans are in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vf4
title: Gene expression profiling of the palate in mice with a conditional inactivation of Tgfbr2 at E14.5

description: We performed global gene expression analyses of the palatal tissue of Tgfbr2fl/fl;Wnt1-Cre and Tgfbr2fl/fl control mice at embryonic day E14.5. Total RNA samples (1 mcirogram per sample) were converted into biotin-labeled cDNA using the EnzoTMBioArray Terminal Labeling Kit with Biotin-ddUTP and standard protocols recommended by Affymetrix (Santa Clara, CA). Fragmented cDNA was applied to GeneChip, Mouse Genome 430 2.0 Arrays (Affymetrix) that contain probe sets designed to detect over 39,000 transcripts. Microarrays were hybridized, processed and scanned, using manufacturers' recommended conditions. Each of the .cel files represents a different experiment (biological replicate). E145_CKO files are results from day 14.5 Tgfbr2fl/fl;Wnt1-Cre mutant mice. E145_WT files are results from day 14.5 Tgfbr2fl/fl control mice.
DOI: 10.25550/vg4
title: microCT - Bone Tissue of Ctgf Control Mouse at P0

description: Mouse ID: CP053 This dataset includes microCT scans of the skull of a Ctgf Control Mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vge
title: microCT - Bone Tissue of K14-Cre;Tgfbr2flfl mouse at P0

description: This dataset includes 1 microCT scan of the skull of a K14-Cre; Tbfbr2fl/fl mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vn8
title: microCT - Soft Tissue of C57BL6J at E14.5

description: This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at E14.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vpm
title: Micro-CT images of adult mouse skulls, Collaborative Cross C57BL6 x 129S1

description: The dataset consists of a set of images for 22 mice with one parent from the C57BL6 strain and the other from the 129S1 strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/vqj
title: microMRI images of skulls of Tgfbr2F/+ * Alk5F/+ mice at E18.5

description: microMRI images of skulls of Tgfbr2F/+ * Alk5F/+ mice at E18.5. The dataset contains 3-D images in niftii format for 1 mouse.
DOI: 10.25550/vtj
title: Micro-CT images of adult mouse skulls, Collaborative Cross CAST x C57BL6

description: The dataset consists of a set of images for 27 mice with one parent from the CAST strain and the other parent from the C57BL6 strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.7910/dvn/214lmd/ahskhg
title: RUT_wetSp.WP1

description: :unav
DOI: 10.7910/dvn/214lmd/clvtac
title: RUT_warme.WP1

description: :unav
DOI: 10.7910/dvn/214lmd/gwlrdu
title: RUT_inten.WP1

description: :unav
DOI: 10.7910/dvn/214lmd/plplc9
title: RUT_plus.WP1

description: :unav
DOI: 10.7910/dvn/214lmd/s4erbg
title: RUT_80_09.WP1

description: :unav