cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh3293751.08fu
title: SH3293751.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3293752.08fu
title: SH3293752.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3293753.08fu
title: SH3293753.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3293754.08fu
title: SH3293754.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5061/dryad.2kd28/7
title: Appendix_S5

description: Climatic data for all localities (including latitude and longitude) extracted from WorldClim database at 30 second resolution for 170 species from the tree of Edwards & Smith [13] for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12).  Note that temperature values are in degrees Celsius*10 and precipitation values are in mm/year.
DOI: 10.5061/dryad.2kd28/8
title: Appendix_S6

description: Climatic data for all localities (including latitude and longitude) extracted from WorldClim database at 30 second resolution for 62 species from Tree 1 in Spriggs et al. [2] for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12).  Note that temperature values are in degrees Celsius*10 and precipitation values are in mm/year.
DOI: 10.5061/dryad.2kd28/9
title: Appendix_S7

description: Climatic data for all localities (including latitude and longitude) extracted from WorldClim database at 30 second resolution for 60 species from Tree 2 in Spriggs et al. [2] for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12). Note that temperature values are in degrees Celsius*10 and precipitation values are in mm/year.
DOI: 10.5061/dryad.39np4/1
title: Pioneer RDT comms data file

description: Main data file for Pioneer study and associated manuscript focused on how patients and health workers interact around malaria rapid diagnostic testing and how the tests are experienced by patients in practice (located western Uganda). The file contains full indexed dataset from patient interviews as well as full observation data.
DOI: 10.5061/dryad.40jp4/1
title: Pick_et_al_2016_AmNat_data

description: Data of body mass, size and survival throughout development of Japanese quail chicks originating from reciprocal crosses of divergent artificial selection lines for prenatal maternal investment
DOI: 10.5061/dryad.4c5f9/1
title: suplementaryFigs

description: Supplementary Figures
DOI: 10.5061/dryad.4c5f9/2
title: Body_color_image_files

description: JPG files image data; Dorsal views of male Hercules beetles.
DOI: 10.5061/dryad.4c5f9/3
title: Thoracic_horn_LM_image_files

description: JPG file image data; major adult male Hercules beetles - lateral view - for landmark-based analyses
DOI: 10.5061/dryad.4c5f9/4
title: tps_&_RGB_inputs

description: input data for morphological-based analyses.
DOI: 10.5061/dryad.4c5f9/5
title: molecular_data

description: input data for molecular-based analyses
DOI: 10.5061/dryad.54k37/1
title: Variables included in studies on the effect of climate change on amphibians and reptiles

description: Each row indicates the dependent and independent variables included in a specific study. Studies that investigated several species are represented by as many rows as species included.
DOI: 10.5061/dryad.5cm32/1
title: A.atkinsiana and A.ancistrocarpa genotypes

description: Microsatellite genotypes and population locations for A.atkinsiana and A. ancistrocarpa in Genalex format
DOI: 10.5061/dryad.5cm32/2
title: A.ancistrocarpa sequence data

description: Chloroplast sequence data for A. ancistrocarpa in Nexus format
DOI: 10.5061/dryad.5cm32/3
title: A.atkinsiana sequence data

description: Chloroplast sequence data for A. atkinsiana in Nexus format
DOI: 10.5061/dryad.5kc40/1
title: DATASET
DOI: 10.5061/dryad.709t8/1
title: Bioclimatic variables

description: This file includes values for every climate variable from WorldClim for every species (for variable definitions see: http://www.worldclim.org/bioclim). Further information about WorldClim in Hijmans, R.J., S.E. Cameron, J.L. Parra, P.G. Jones and A. Jarvis, 2005. Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology 25: 1965-1978. http://dx.doi.org/10.1002/joc.1276
DOI: 10.5061/dryad.709t8/2
title: Mean climate variables and elevation

description: The file includes mean climate variables from WorldClim and mean elevation for every species.
DOI: 10.5061/dryad.709t8/3
title: DataMatrixTreeFerns

description: Molecular data matrix comprising all taxa of tree ferns used in phylogenetic analyses.
DOI: 10.5061/dryad.709t8/4
title: Trees retrieved by Maximum Likelihood analyses

description: This file includes the phylogenetic trees retrieved by Maximum Likelihood analyses.
DOI: 10.5061/dryad.7117c/1
title: Nephila fenestrata DURATION data

description: This is an original dataset providing data on male developmental durations in the study species Nephila fenestrata.
DOI: 10.5061/dryad.7117c/2
title: Nephila fenestrata SIZE data

description: This is an original dataset providing data on adult size in the study species Nephila fenestrata.
DOI: 10.5061/dryad.7117c/3
title: Nephila fenestrata WEIGHT data

description: This is an original dataset providing data on adult weight in the study species Nephila fenestrata.
DOI: 10.5061/dryad.7117c/4
title: Nephila senegalensis DURATION data

description: This is an original dataset providing data on male developmental durations in the study species Nephila senegalensis.
DOI: 10.5061/dryad.7k82t/1
title: supplementary video V1 (backward walking)

description: Shown is an ant in backward locomotion dragging a large food item. Note that the walking pattern is irregular, without any tripod coordination.
DOI: 10.5061/dryad.7k82t/2
title: supplementary video V2 (forward walking)

description: Shown is an ant walking in tripod fashion during forward locomotion. Note that three legs are coupled and are swinging in unison, while the other three legs remain on the ground.
DOI: 10.5061/dryad.7k82t/3
title: supplementary video V3 (forward pulling)

description: Ants prefer to walk in forward-faced orientation, as long as the shape and weight of a food item makes this possible. Shown here is an example of an ant that has a food item that is too light-weight for backward dragging and the ant pushes the item forwards towards its home nest.
DOI: 10.5061/dryad.7tp7f/4
title: File S5 - Weights

description: Akaike weights for all models for each tree for each set of constrained topologies.
DOI: 10.5061/dryad.7tp7f/5
title: SI Dating Script

description: Script used for dating phylogeny using cal3.
DOI: 10.5061/dryad.90qb7.1
title: Data from: Effects of antibiotic resistance alleles on bacterial evolutionary responses to viral parasites
DOI: 10.5061/dryad.dq3cf/1
title: Collembolan and understory plant abundance, diversity and community composition as well as environmental variables data

description: File includes data about the abundance and diversity of collembolan and their functional groups, i.e. epedaphic, hemiedaphic and euedaphic, on each experimental plots. It also includes plots characteristics, understory vegetation and environmental variables used in the path analysis. We also included the abundance and ordination scores of each species for both the collembolan and understory plant communities.
DOI: 10.5061/dryad.g4760/5
title: Lepitotalm23BestSchemefromPartitionFinderV1.10

description: The best partition Scheme from PartitionFinderV1.10
DOI: 10.5061/dryad.g4760/6
title: lepitotalm23MrsBayes

description: The alignment and setting for Mrbayes bayesian analyses
DOI: 10.5061/dryad.g4760/7
title: Lepitotalm23Mrbayes_consustree

description: The consensus tree by Mrbayes
DOI: 10.5061/dryad.gd74v/11
title: get_support_values_from_tree

description: Perl script to extract support values from a tree for a predefined clade
DOI: 10.5061/dryad.gd74v/12
title: clade_support_from_site_patterns

description: Perl script to identify sites supporting a predefined clade, classified by the method of Waegele and Rodding (1998)
DOI: 10.5061/dryad.gd74v/13
title: parse_trees_test_alt_topologies

description: Perl script to test tree topologies. Specifically, it checks if the tree conforms to T1, T2 or T3 hypotheses.
DOI: 10.5061/dryad.gd74v/3
title: 251_amemiya_3lf
DOI: 10.5061/dryad.gd74v/4
title: 1821_smx_3lf
DOI: 10.5061/dryad.gd74v/5
title: 1821_homog_blocks
DOI: 10.5061/dryad.gd74v/6
title: 251_heterog_blocks
DOI: 10.5061/dryad.gd74v/7
title: 251_homog_blocks
DOI: 10.5061/dryad.gd74v/8
title: 1821_heterog_blocks
DOI: 10.5061/dryad.m9h08/1
title: Formica pratensis sex allocation

description: Numerical sex allocation data from Formica pratensis colonies from Southern Finland, 2007-2009. Data collected from two cohorts each year, with different sex allocation strategies in the two cohorts. Columns: nest = nest ID, cluster = ID of the colony (for monodomous nests this equals the nest ID, for polydomous colonies several nests are included in the same colony, based on their close physical proximity in the field), year = year, cohort: 1 = early, 2 = late, totalm = number of males in the sample, totalf = number of females in the sample, propmales = totalm /(totalm + totalf), r = relatedness among nestmate workers, calculated based on the genotypes in the pratensis_genotypes.txt file. Note that there are in some cases several lines containing data from the same nest and cohort, which are different sample containers from the same sampling event, not treated as independent data points. Also note that not all the nests are present in the genotype file, even if they have a relatedness value - these are cases where the relatedness estimate is the same as for the other nests in the same cluster.
DOI: 10.5061/dryad.m9h08/2
title: pratensis_genotypes

description: Formica pratensis microsatellite genotypes for Helanterä, Kulmuni & Pamilo.The individual genotypes are presented by nests (the identifier before the comma on each line), indicated by the nest code (nests 1-105 and later found additional nests where the nest code starts with X). The nest code is followed by the genotype of each individual on eleven loci, given as a combination of two three-digit alleles combined into a six-digit diploid genotype. The loci are FE13, FE17, FE19, FE37, FE38, FE42, FE7, FL12, FL20, FL21, FL29. Missing genotypes are marked with 000000.
DOI: 10.5061/dryad.rh07b/2
title: Lateral view
DOI: 10.5061/dryad.rh07b/3
title: Coordinates to identify the 3D trajectory of pectoral fin
DOI: 10.5061/dryad.t281k/1
title: Inputs and executables for simulations

description: Inputs and executables for simulations
DOI: 10.5061/dryad.1m056/3
title: Alonzo_et_al_Nature_Comm_2016_Expt3

description: This file contains the data from Experiment 3 (the experiment examining the effect of ovarian fluid on sperm chemoattraction).  These data are represented in Figure 4.
DOI: 10.5061/dryad.2bj8g/1
title: fertsuccess
DOI: 10.5061/dryad.2kd28/12
title: Appendix_S10

description: Climatic data for all localities from the native range (x = longitude, y = latitude) for 102 species that included one or more non-native localities in the dataset of Edwards & Smith [13] (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12).  The general continental region where each locality is located is also given.
DOI: 10.5061/dryad.2kd28/13
title: Table_S1

description: Summary of past rates, projected rates of climate change and relative differences between past and projected rates for the tree from Edwards & Smith [13], Tree 1 and 2 from Spriggs et al. [2] for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12). For each tree and for each variable, we report the maximum, median and minimum values of niche rates among species, rates of projected future climate change, and the difference between niche rates and rates of future climate change.
DOI: 10.5061/dryad.2kd28/14
title: Table_S2

description: Likelihood and AIC scores for each model for each subfamily for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12), using the tree of Edwards & Smith [13]. Boldface indicates the best fitting model (based on the lowest AIC).
DOI: 10.5061/dryad.2kd28/15
title: Table_S3

description: Likelihood and AIC scores for each model for each subfamily for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12), using Tree 1 (younger ages) from Spriggs et al. [2].  Boldface indicates the best fitting model (based on the lowest AIC)
DOI: 10.5061/dryad.2kd28/16
title: Table_S4

description: Likelihood and AIC scores for each model for each subfamily for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12), using Tree 2 (older ages) from Spriggs et al. [2].  Boldface indicates the best fitting model (based on the lowest AIC)
DOI: 10.5061/dryad.2kd28/17
title: Table_S5

description: Results for 170 species based on the tree of Smith & Edwards [13] for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12), including estimated node ages (in million years), future rates of climate change projected for the year 2070 within their geographic range (for the maximum, median, and minimum estimated rate among projections: max, med, min), past rates of climatic niche change based on the best-fitting model of trait evolution, absolute differences in mean values (among localities) for the climatic variables for each species pair, and differences between projected rates of climate change and the past rates of niche change.
DOI: 10.5061/dryad.2kd28/18
title: Table_S6

description: Results for 62 species from Tree 1 of Spriggs et al. [2] for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12), including estimated node ages, future rates of climate change projected for the year 2070 within their geographic range (for the maximum, median, and minimum estimated rate among projections: max med, min), past rates of climatic niche change based on the best-fitting model of trait evolution, absolute differences in mean values (among localities) for the climatic variables for each species pair, and differences between projected rates of climate change and the past rates of niche change.
DOI: 10.5061/dryad.2r6r4/1
title: Fry weight LMM

description: Data contained in this spreadsheet relates to the linear mixed-effect model explaining variation in fry weight (g).
DOI: 10.5061/dryad.2r6r4/2
title: Fry survival LMM

description: Data contained in this spreadsheet relates to the linear mixed-effect model explaining variation in fry survival.
DOI: 10.5061/dryad.2r6r4/3
title: Embryo RTL LMM

description: Data contained in this spreadsheet relates to the linear mixed-effect model explaining variation in embryo telomere length.
DOI: 10.5061/dryad.2r6r4/4
title: Fry RTL LMM

description: Data contained in this spreadsheet relates to the linear mixed-effect model explaining variation in fry telomere length.
DOI: 10.5061/dryad.2rs41/1
title: Physiological and behavioral trait data

description: Physiological and behavioural phenotype dataon 1,219 mice from the Carworth Farms White (CFW) outbred mouse stock. The data are stored in comma-delimited ("csv") format, with one line per sample.
DOI: 10.5061/dryad.2rs41/2
title: SNPs genotyped in CFW mice

description: Information about 92,734 single nucleotide polymorphisms (SNPs) on chromosomes 1-19 genotyped in the CFW outbredmouse cohort. The table is stored in space-delimited columns, with one row per SNP. All genomic positions are based on Mouse Genome Assembly 38 from the NCBI database (mm10, December 2011).
DOI: 10.5061/dryad.2rs41/3
title: Genotype data for 1,161 mice at 92,734 SNPs

description: Table with space-delimited columns containing genotype data for 1,161 mice at 92,734 SNPs. The first column ("id") is the sample id, and the second column ("discard") indicates whether the sample should be discarded because of flowcell samples that were mislabeled, and so we cannot be sure of the identity of these samples.
DOI: 10.5061/dryad.2rs41/4
title: PLINK sample information file

description: CFW genotypes stored in PLINK .fam/.bim/.bed format.
DOI: 10.5061/dryad.2rs41/5
title: PLINK SNP information file

description: CFW genotypes stored in PLINK .bed/.bim/.fam format.
DOI: 10.5061/dryad.2rs41/6
title: PLINK binary genotype file

description: CFW genotypes stored in PLINK .bed/.bim/.fam format.
DOI: 10.5061/dryad.2rs41/7
title: Genotype calls from hippocampus RNA-seq data

description: VCF file containing the genotypes at SNPs identified from RNA-seq data in the hippocampus. Genotypes and allele counts in this VCF file are used for analyzing allele-specific expression in the hippocampus.
DOI: 10.5061/dryad.3574r/1
title: Presence of MHC alleles in each individual

description: 1: allele present. 0: allele absent.
DOI: 10.5061/dryad.3574r/2
title: Relative peak sizes from GC-FID of preen wax for each individual

description: Relative peak sizes are expressed as a percentage of total chromatogram area.
DOI: 10.5061/dryad.3574r/3
title: Pairwise matrix of chemical distance for female-female dyads

description: Values are standardized Bray-Curtis distances, calculated from relative areas of peaks on GC-FID chromatogram of preen wax.
DOI: 10.5061/dryad.3574r/4
title: Pairwise matrix of chemical distance for male-male dyads

description: Values are standardized Bray-Curtis distances, calculated from relative areas of peaks on GC-FID chromatogram of preen wax.
DOI: 10.5061/dryad.3574r/5
title: Pairwise matrix of chemical distance for male-female dyads

description: Values are standardized Bray-Curtis distances, calculated from relative areas of peaks on GC-FID chromatogram of preen wax.
DOI: 10.5061/dryad.4c5f9/6
title: sample_info

description: collection information for individual samples included in the molecular analyses.
DOI: 10.5061/dryad.5g129/1
title: Sorghum SSR

description: Dataset with the 321 sorghum samples and the 16 SSRs. The variety, site and farmer ID where the plant was collected are provided.
DOI: 10.5061/dryad.6n9h6/1
title: 1-Combined trnL-ITS data matrix

description: Combined trnL-ITS data matrix for bayesian phylogenetic analyses
DOI: 10.5061/dryad.6n9h6/2
title: 2-Tetraglochin-trnLF matrix

description: Tetraglochin-trnLF matrix alignment
DOI: 10.5061/dryad.6n9h6/3
title: 3-Tetraglochin-ITS matrix

description: Tetraglochin-ITS matrix
DOI: 10.5061/dryad.6n9h6/4
title: 4-Tetraglochin-ITS&trnLF-50% MAJORITY RULE CONSENSUS TREE

description: 4-Tetraglochin-ITS&trnLF-50% MAJORITY RULE CONSENSUS TREE from Bayesian analysis with MrBayes 3.2
DOI: 10.5061/dryad.709t8/5
title: TreeFernsBeast