cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.s9dfdu
title: Occurrence Download

description: A dataset containing 789609 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Dolichonyx oryzivorus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 789609 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027617-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86gn7u
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba thylacocarpa"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027651-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzcdjf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galium glaucum"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027649-250711103210423/datasets/export for details.
DOI: 10.15468/dl.fed93e
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hordeum distichon",
 "Country is Albania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027650-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9jf3wu
title: Occurrence Download

description: A dataset containing 449 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vella aspera"
 ]
}

 The dataset includes 449 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027652-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zecbdq
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hordeum distichon",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 120 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027654-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29588621
title: 控制code.zip

description: 监测小水域的石油和天然气泄漏
DOI: 10.6084/m9.figshare.29588621.v1
title: 控制code.zip

description: 监测小水域的石油和天然气泄漏
DOI: 10.15468/dl.je58tu
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hordeum distichon",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 174 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027653-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57710/alba-es-20250340265
title: Revealing Complex 3D Domain Walls in Cylindrical Nanowires with Soft X-ray Tomography
DOI: 10.15468/dl.b7rra3
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimelodella vittata"
 ]
}

 The dataset includes 118 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027658-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txtszx
title: Occurrence Download

description: A dataset containing 7747 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melissa officinalis",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7747 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027655-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mktagy
title: Occurrence Download

description: A dataset containing 7758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vicia grandiflora, Vicia grandiflora)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7758 records from 187 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027656-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmnxnj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kali turgidum",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027660-250711103210423/datasets/export for details.
DOI: 10.15468/dl.qsh6zq
title: Occurrence Download

description: A dataset containing 954 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia secunda"
 ]
}

 The dataset includes 954 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027659-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.us5f5f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kali turgidum",
 "Country is Namibia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027662-250711103210423/datasets/export for details.
DOI: 10.15468/dl.99xpc6
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Noccaea annua"
 ]
}

 The dataset includes 80 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027664-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16011453
title: Simulating out-of-sample atmospheric transport to enable flux inversions [Dataset]

description: This repository contains training examples for Surface and Column FootNet.
DOI: 10.5281/zenodo.16011454
title: Simulating out-of-sample atmospheric transport to enable flux inversions [Dataset]

description: This repository contains training examples for Surface and Column FootNet.
DOI: 10.57710/alba-es-2024028112
title: Studying the RNase bacterial resistance acquisition delay

description: As is widely known, antibiotic resistance is one of the most important global health issues nowadays. Bacteria have an extraordinary ability to adapt to antibiotic exposure. A recent report (2023) from the United Nations states that by 2050, antibiotic resistance is going to be the main “medical” cause of death. Among the targeted bacteria for the World Health Organisation, Acinetobacter baumannii is on the top of the critical priority organism to tackle its antibiotic resistance acquisition. 

A. baumannii are a common specie of Acinetobacter bacteria and has become a main cause of hospital infection, especially in intensive care units if the medical instruments are not properly cleaned. It usually causes bacteremia, pneumonia, meningitis, skin infections and so on. According to WHO, multi-drug resistant A. baumannii strains will be in the future years one of the major concerns on public health.

In our research group we have developed a new chimeric RNase (RNase 3/1) that is able to delay the A. baumannii resistance acquisition against the last-resort antibiotic colistin when combined with it. We found that the combination of the colistin with the chimeric RNase results in a biphasic dose-response synergistic profile and is able to reduce the bacterial resistance by the 40%, and even avoid it. 

The goal of this proposal is to elucidate if the RNase 3/1 could get internalized inside the bacterial cell when combined with colistin. Not only that, in case we can prove this internalization, we would like to visualize if there is a microscopic change on the bacterial RNA.
DOI: 10.15468/dl.a667uu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kali turgidum",
 "Country is Lesotho",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027661-250711103210423/datasets/export for details.
DOI: 10.57710/alba-es-2024028160
title: Atypical cellular membrane remodeling by highly replicating strains of hepatitis C virus

description: A huge amount of work has been devoted to the ultrastructural characterization of the HCV "membranous web", a dedicated replication organelle generated in cells by replication of the hepatitis C virus (HCV), a major public health problem. Previous works include correlative light and electron microscopy (CLEM) and soft X-ray tomography on the ALBA MISTRAL beamline. Now partner 2 has discovered hyperreplicating strains of HCV and shown that their membranous web is distinctly different from the one associated with other HCV strains. The three partners (Bressanelli (I2BC, Paris-Saclay) : structural virology ; Lohmann (University of Heidelberg) : cellular virology & Jamme (synchrotron SOLEIL) : cryo-CLXM) propose to image this new membranous web at three times post establishment of replication. These results will be quantitatively compared to tomograms of mock-transfected cells and of the JFH1 phenotype (previously characterized on MISTRAL) to understand the different cellular alterations.
DOI: 10.15468/dl.gcbpc4
title: Occurrence Download

description: A dataset containing 1409 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galium japonicum"
 ]
}

 The dataset includes 1409 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027663-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57710/alba-es-2024028242
title: Common Principles for the Chemical Process of Inorganic Condensation in Marine Microalgae

description: Liquid-liquid phase separation (LLPS) is a fundamental mechanism governing intracellular organization, facilitating the formation of droplet-like structures that promote rapid and reversible condensation of proteins and nucleic acids. This process plays a crucial role in spatial organization and functional compartmentalization within cells, influencing a wide array of biological processes. Previously, we identified dense Ca-P-rich bodies within the vacuole of calcifying unicellular algae, and the results of our recent beamtime indicate that their formation is through a LLPS process. This discovery of LLPS in the formation of inorganic condensates raises questions about their prevalence in marine microalgae and prompts comparative investigations into their chemical and anatomical characteristics. We propose to examine, in addition to the data collected on Pleurochrysis carterae, two algal strains of the model species Emiliania huxleyi, both mineral-forming and non-mineralizing. Our aim with cryoSXT experiments is to image samples at different conditions of the inorganic condensates, with a focus on elucidating the dynamics of both the formation and dissolution of these inorganic structures. By using the quantitative ability of spectro-microscopy at the Ca L-edge, we will analyze the chemical compositions of intracellular ion pool. The results from these investigations will establish the role of LLPS in inorganic condensates, moving from descriptive insights into mechanistic observations of the cellular processes.
DOI: 10.57710/alba-es-2024028193
title: ORGANELLE DYNAMICS AND MEMBRANE CONTACT SITES STUDY USING CRYO-SOFT X-RAY TOMOGRAPHY: THE ENDOPLASMIC RETICULUM AS A SCAFFOLD MEMBRANE FOR FISSION PROCESSES

description: Mitochondrial membrane contact sites (MCSs) play a crucial role in cellular function, yet there is still much to learn about MCSs dysfunction and its implications in human disease. GDAP1 and MFN2 are mitochondrial outer membrane proteins involved in membrane contacts in both between mitochondria, and mitochondria with diverse organelles. GDAP1 and MFN2 regulate mitochondria-endoplasmic reticulum (ER) contacts, the most well-characterized MCSs, but also participate in mitochondria-lysosome and mitochondria-peroxisome contacts. Interestingly, GDAP1 deficiency results in giant lysosomes and enlarged peroxisomes with abnormal distribution. Notably, the enzymatic capacity of these organelles remains unaffected, suggesting that GDAP1 dysfunction exclusively affects the membrane structure. MFN2 deficiency does not elicit this effect.
Pathogenic variants of the GDAP1 and MFN2 genes cause Charcot-Marie-Tooth (CMT) neuropathy, one of the most common inherited neurological disorders. Knowing in depth the precise role of GDAP1 and MFN2 in the MCSs could explain early events of this neuropathy. 
Our research group has applied super-resolution fluorescence microscopy (computational superresolution and STED technologies) to analyze the morphology of mitochondria, lysosomes, and peroxisomes in GDAP1 and MFN2 deficient cells, as well as MCSs. Our current aim is to further investigate the inter-organelle connections with the ER, which has been proposed as a central hub for organelle dynamics. By employing cryo-soft X-ray tomography, we seek to elucidate the organellar landscape and membrane trafficking, thus uncovering the early events in the pathophysiology of CMT-related neuropathies and identifying potential therapeutic targets.
DOI: 10.57710/alba-es-2024028139
title: Structure of viral entry and replication sites of ASFV

description: Soft X-ray cryotomography will be applied in ALBA MISTRAL to gain detailed insight into the components and architecture of the viral entry process and the replication organelles or viral factories (VFs) of African swine fever virus (ASFV).
ASFV is a member of the Asfarviridae family, which is part of the Nucleocytoplasmic Large DNA Viruses (NCLDV) group and is closely related to Poxvirus. The mechanism of ASFV internalization in the host cell and the fusion membrane events that occur during early stages of infection are not well understood. The aim of this study is to elucidate the role of viral components, organelles, membranes, lipids, and other structures in the entry and viral replication site process. We will focus specially on the role of endosomes and microtubules as well as and how mitochondria are affected during the infection. This cellular complex is important for endosomal membrane fusion and subsequent release into the cytoplasm. Furthermore, this study aims to describe the remodeling of cellular compartments and cellular modifications induced at the viral factories. To achieve this, we will analyze the ASFV viral replication sites using Soft X-ray tomography of cryopreserved samples (Cryo-SXT), a synchrotron-based imaging technique, in two relevant cell types for ASFV: Vero cells and PK15 cells (Porcine kidney cells). 
Previously, we identified the recruitment of endosomal membranes to early African Swine Fever Virus (ASFV) factories, which combined with cholesterol are required for a productive infection. Additionally, we found that certain cellular proteins related to cholesterol transport are important for viral entry and the formation of viral factories.
DOI: 10.15468/dl.zut88m
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mentha piperita",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 80 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027669-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57710/alba-es-2024028082
title: Verification of fluorine in situ in glioblastoma cells after riluzole drug treatment

description: Gliomas are the most common primary brain tumors in humans. Among them, glioblastoma (GBM) is characterized by short median survival and a 100% tumor-related mortality rate. Cryo-soft X-ray tomography (cryo-SXT) has been used to analyze the structural organization of these cells. However, to our knowledge, no previous studies have observed the structural changes at the organelles level in intact cells after treatment with riluzole.

In the first part of the experiment, we aim to follow the structural changes of cellular compartmentalization in the "water window" energy range. In addition, in the second part, we would like to localize this drug at the cellular level as the molecule of riluzole contains three fluorine atoms and assess organelles that are targeted. Fluorine itself could damage mitochondria by affecting the respiratory chain, cell surface, lipids peroxidation, nucleolus, and DNA damage. 

To understand these structural changes and possible fluorine allocation in the cells, we attempt to apply soft x-ray tomography at the Mistral beamline. These results could imply that future therapies could turn from eliminating rapidly dividing tumor cells.
DOI: 10.15468/dl.x6ka4t
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Physaria sinuosa"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027665-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57710/alba-es-2024028165
title: Water hydration of porous network formed by lamellar clay particles: A low energy TXM tomographic investigation

description: Predicting the long-term transport of water, ions and solutes in clay–rich media such as clayey rocks or soils is a major environmental issue. In that context the characterization of the evolution of the porous network, i.e., orientation of particles associated to the partial water-filling of the porosity, with evolving relative humidity is still not fully understood. We wish to beneficiate from transmission X-ray Microscopy in the water window in tomographic mode to access to such information. By recording clay particles aggregates at different relative humidity conditions, these experiments and the quantitative treatments of the images obtained should provide key insights for the description of the 3D organization of air, water and solid in unsaturated porous media
DOI: 10.15468/dl.22m4sp
title: Occurrence Download

description: A dataset containing 23325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vicia lutea, Vicia lutea, Vicia lutea)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 23325 records from 740 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027668-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wa6dv2
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hordeum distichon",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 30 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027666-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zuu5s
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAD0881"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027667-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q58497
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mentha piperita",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027671-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h87hrq
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hordeum distichon",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027670-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ydy7n2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kali turgidum",
 "Country is Venezuela (Bolivarian Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027673-250711103210423/datasets/export for details.
DOI: 10.57710/alba-es-2024028439
title: Soft X-Ray Structural Characterisation of Tupanvirus viral factory in Acanthamoeba castellanii cells.

description: We intend to use cryo soft X-ray tomography at MISTRAL beamline to investigate the morphological and structural organization of the viral factory generated by the infection of Tupanvirus in Acanthamoeba castellanii, sheading ligth on the dynamic and structure of the viral factory along the viral replication.
DOI: 10.15468/dl.74vv9f
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((130.41263 -10.5404,144.54088 -10.5404,144.54088 1.54007,130.41263 1.54007,130.41263 -10.5404))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dendrolagus dorianus"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027676-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.