cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.adt8ft
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is Abstoma fibulaceum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011904-251025141854904/datasets/export for details.
DOI: 10.15468/dl.6v95us
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Abstoma fibulaceum, Abstoma indicum, Abstoma laevisporum, Abstoma pampeanum, Abstoma purpureum, Abstoma reticulatum, Abstoma stuckertii, Abstoma townei, Abstoma verrucisporum, Acutocapillitium filiforme)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 73 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011905-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tydekx
title: Occurrence Download

description: A dataset containing 541068 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Europe, Asia)",
 "Month is one of (April, May, June, July, August, September, October)",
 "TaxonKey is Circus cyaneus"
 ]
}

 The dataset includes 541068 records from 1773 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011893-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqz3kn
title: Occurrence Download

description: A dataset containing 333066 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphibia",
 "Year is 2017"
 ]
}

 The dataset includes 333066 records from 1209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006931-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5az3e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thyrsacanthus tubaeformis",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051077-250717081556266/datasets/export for details.
DOI: 10.5281/zenodo.15698336
title: Accompanying files for "A bridge-like lipid transfer protein is critical for generation of invasive stages in malaria parasites"

description: This upload contains files documented in a preprint.

Preprint: https://doi.org/10.1101/2025.07.25.666630

The files uploaded here are:

Structures:



Alphafold3 (1) predictions for PfVPS13L1 (split in 2 pieces: 1-3600; 3281-5988), PfVPS13L2 (split in 3 pieces: 1-2822; 2140-5096; 4401-7594), PfVPS13L5 (split in 2 pieces: 1-4805; 3668-6769) and PfVPS13L16 (split in 2 pieces: 1-4916; 3868-5415) used for the domain cartoons presented in Fig. 3D. Five confidence-ranked structures are presented for each protein sequence. The annotated full length structure of PfVPS13L1 (presented in Fig. 4B-D) was aligned on PyMOL (2) and is also included in the PfVPS13L1 zip as a .pse file. 

Alphafold3 (1) interaction prediction of PfVPS13L1 N-term (a.a. 1-2976) and PfVAP (presented in Fig. S5F).


Plasmids:



All partially annotated sequences for all transfected plasmids in the study, organized into 4 categories.


Code:



Python codes for identifying FFAT motifs in a given fasta file using the scoring matrix from Slee et al. (3) or the one proposed for Plasmodium in this article. The code was partially written by ChatGPT (OpenAI, 2025).


 

References

1. Abramson, J et al. Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature (2024).

2. The PyMOL Molecular Graphics System, Version 2.0. Schrödinger LLC.

3. Slee, J.A. & Levine, T.P. Systematic prediction of FFAT motifs across eukaryote proteomes identifies nucleolar and eisosome proteins with the predicted capacity to form bridges to the endoplasmic reticulum. Contact (Thousand Oaks) (2019).
DOI: 10.15468/dl.3n2mgm
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sorbaria sorbifolia",
 "Country is Belarus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 139 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051079-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgxzzz
title: Occurrence Download

description: A dataset containing 1346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sorbaria sorbifolia",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1346 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051081-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ckhxu
title: Occurrence Download

description: A dataset containing 3199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cymbalaria muralis",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3199 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051080-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uge4nh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thyrsacanthus tubaeformis",
 "Country is Samoa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051078-250717081556266/datasets/export for details.
DOI: 10.15468/dl.hyrfj8
title: Occurrence Download

description: A dataset containing 1472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1472 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051082-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffgshh
title: Occurrence Download

description: A dataset containing 209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens",
 "Country is Costa Rica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 209 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051084-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.caphtj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aristolochia elegans",
 "Country is Cook Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051086-250717081556266/datasets/export for details.
DOI: 10.15468/dl.cyedez
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sorbaria sorbifolia",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 48 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051087-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.962rb2
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cymbalaria muralis",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 74 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051088-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4ub8q
title: Occurrence Download

description: A dataset containing 26397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Clematis alpina"
 ]
}

 The dataset includes 26397 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051085-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dfjxgn
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sorbaria sorbifolia",
 "Country is Lithuania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 50 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051089-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6qwfg6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051090-250717081556266/datasets/export for details.
DOI: 10.15468/dl.8ypevm
title: Occurrence Download

description: A dataset containing 3112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3112 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051093-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.su39vg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aristolochia elegans",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051091-250717081556266/datasets/export for details.
DOI: 10.15468/dl.j4d4ne
title: Occurrence Download

description: A dataset containing 1112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sorbaria sorbifolia",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1112 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051094-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gy6jas
title: Occurrence Download

description: A dataset containing 3704 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sorbaria sorbifolia",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3704 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051095-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n5cm82
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cymbalaria muralis",
 "Country is Serbia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051096-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzqf4w
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens",
 "Country is Papua New Guinea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051097-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12584590
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.16455531
title: 1-fatal_findings_cover_baluchi.jpg
DOI: 10.5281/zenodo.16455530
title: 1-fatal_findings_cover_baluchi.jpg
DOI: 10.25345/c58w38f64
title: MassIVE MSV000098648 - Class II restricted Bordetella pertussis antigens recognized by murine and human memory CD4+ T cells reduce respiratory tract colonization
title: Shamseldin MM, Hall JM, Lawrence GM, Hernandez GM, Verzani EK, Liu Y, Guo M, Carr SA, Deora R, Lovett-Racke A, Abelin JG, Dubey P. 2025. Despite high vaccination rates, Bordetella pertussis (Bp) infections and pertussis disease are resurging worldwide. While it is established that CD4+ T cells are required for sustained protection, the antigens they recognize are unknown, limiting vaccine optimization. We identified high affinity epitopes from Bp reference and clinical strains presented on MHC Class II I-Ab, using a combination of immunopeptidomics, bioinformatics and functional T cell assays. A subset of these epitopes stimulated systemic and mucosal CD4+ T cells from mice immunized with heat-killed Bp, and systemic T cell responses from humans immunized with the whole-cell pertussis vaccine. Mice immunized with a subunit vaccine containing two recombinant proteins identified in our screen, were challenged with Bp. Bacterial burden was cleared from the lower respiratory tract and significantly reduced in the upper respiratory tract. TH1/TH17 polarized CD4+ tissue-resident memory T cells were generated in the nose and lungs. Depletion of CD4+ T cells prior to challenge abrogated protection, demonstrating that antigen-specific CD4+ T cells are essential to clear Bp from the respiratory tract. Thus, novel CD4+ T cell recognized antigens of Bp elicit protective immunity and vaccine formulations incorporating these new antigens may prevent pertussis disease resurgence.
DOI: 10.15468/dl.jzu8ne
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schefflera actinophylla",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051100-250717081556266/datasets/export for details.
DOI: 10.15468/dl.wbpuvu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schefflera actinophylla",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051101-250717081556266/datasets/export for details.
DOI: 10.15468/dl.kx325f
title: Occurrence Download

description: A dataset containing 13005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Clematis virginiana"
 ]
}

 The dataset includes 13005 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051098-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4aew4a
title: Occurrence Download

description: A dataset containing 436459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crotophaga sulcirostris)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 436459 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051069-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9txggd
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cymbalaria muralis",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 80 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051103-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgk78p
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cymbalaria muralis",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 189 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051104-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgyts3
title: Occurrence Download

description: A dataset containing 338830 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coturnix coturnix)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 338830 records from 1840 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051065-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tsynbm
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Données d'occurrences Espèces issues de l'inventaire des ZNIEFF",
 "TaxonKey is Eliomys quercinus (Linnaeus, 1766)"
 ]
}

 The dataset includes 66 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0250138-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwv4cv
title: Occurrence Download

description: A dataset containing 28422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lophochroa leadbeateri"
 ]
}

 The dataset includes 28422 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228214-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8p23k
title: Occurrence Download

description: A dataset containing 76524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is International Barcode of Life project (iBOL)",
 "GadmLevel0Gid is NOR"
 ]
}

 The dataset includes 76524 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204272-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgur2f
title: Occurrence Download

description: A dataset containing 1136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oenothera pilosella Raf."
 ]
}

 The dataset includes 1136 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001304-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcnp3j
title: Occurrence Download

description: A dataset containing 1002 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Tremarctos ornatus (F.G.Cuvier, 1825)"
 ]
}

 The dataset includes 1002 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0213988-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhz8e8
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Onthophagus shirakii Nakane, 1960",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218572-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4u8qf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mycteria leucocephala (Pennant, 1769)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0213992-220831081235567/datasets/export for details.
DOI: 10.15468/dl.4z4uw4
title: Occurrence Download

description: A dataset containing 22697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Portugal",
 "GadmGid is PRT",
 "OccurrenceStatus is Present",
 "TaxonKey is Pipistrellus kuhlii (Kuhl, 1817)"
 ]
}

 The dataset includes 22697 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0250263-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2rycz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equus hemionus Pallas, 1775",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0213989-220831081235567/datasets/export for details.
DOI: 10.15468/dl.zyypqe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Madoqua guentheri Thomas, 1894",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0213994-220831081235567/datasets/export for details.