cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3614690_d2.v1
title: Additional file 2: Table S2. of Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations

description: Gene Ontology terms (GO terms) of the different clusters obtained in Tendral cotyledons. Significant GO terms from the different clusters obtained according to the differentially expressed gene pattern in Tendral cotyledons infected with MNSV-Mα5 and MNSV-Mα5/3’264. % enrichment means the representation of the GO term in relation to the complete array. Genes belonging to each cluster are listed in contiguous spread sheets. A selection of genes from clusters 2 and 11 that had expression levels above 10 times as compared to their control (FC ≥ 10) is also listed. (XLSX 347 kb)
DOI: 10.6084/m9.figshare.c.3614945_d6.v1
title: Additional file 3: of Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles

description: Putative secondary metabolite clusters identified in the P. subalpina genome (XLSX 12 kb)
DOI: 10.5519/qd.3lz19hgo
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (89 records)
DOI: 10.6084/m9.figshare.c.3614951_d4.v1
title: MOESM6 of Understanding the molecular aspects of oriental obesity pattern differentiation using DNA microarray

description: Additional file 6: TableÂ S5. Expression levels of endogenous PTGS2 gene in 15 randomly selected subjects (Random) or 15 volunteers representing LDS pattern (LDS) as measured by quantitative RT-PCR.
DOI: 10.6084/m9.figshare.c.3614945_d8.v1
title: Additional file 4: of Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles

description: General statistics on the presence of InterPro accessions in the analyzed genomes. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3614960_d3.v1
title: Additional file 1: of Complete genome sequences of Francisella noatunensis subsp. orientalis strains FNO12, FNO24 and FNO190: a fish pathogen with genomic clonal behavior

description: Alignment of proteins coding sequences with less than 99 % identity between the three sequenced genomes. (TXT 20 kb)
DOI: 10.6084/m9.figshare.c.3614960_d4.v1
title: Additional file 4: of Complete genome sequences of Francisella noatunensis subsp. orientalis strains FNO12, FNO24 and FNO190: a fish pathogen with genomic clonal behavior

description: COG functional categories found of each species-specific CDS of Francisella noatunensis subsp. orientalis. (TXT 16 kb)
DOI: 10.6084/m9.figshare.c.3614945_d9.v1
title: Additional file 6: of Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles

description: General genome statistics for the species included in the present study. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3614951_d7.v1
title: MOESM7 of Understanding the molecular aspects of oriental obesity pattern differentiation using DNA microarray

description: Additional file 7: TableÂ S6. Expression levels of endogenous G0S2 gene in 15 randomly selected subjects (Random) or 15 volunteers representing LDS pattern (LDS) as measured by quantitative RT-PCR.
DOI: 10.6084/m9.figshare.c.3615149_d3.v1
title: MOESM2 of Targeted bisulfite sequencing of the dynamic DNA methylome

description: Additional file 2 DyMe-Seq region genomic coordinates.
DOI: 10.6084/m9.figshare.c.3615176_d1.v1
title: Additional file 2: Supplementary Data of Genome-wide discovery and development of polymorphic microsatellites from Leishmania panamensis parasites circulating in central Panama

description: TableÂ S1.Â  Perfect microsatellite loci found in L. panamensis genome. Table S2. Specificity of new L. panamensis SSR panel on non-target DNAs. Table S3. Characterization of limits of detection for each described L. panamensis SSR locus. Table S4. Raw genotype data for all tested loci and Leishmania species. Table S5. Amplification profiles of described panel of microsatellites in species other than L. panamensis. Table S6. P values for exact test of pairwise linkage disequilibrium, as estimated in Arlequin v3.5.1.3. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3615149_d6.v1
title: MOESM6 of Targeted bisulfite sequencing of the dynamic DNA methylome

description: Additional file 6: Table S2 Differentially methylated regions between GTEx samples artery coronary and nerve tibial.
DOI: 10.6084/m9.figshare.c.3615149_d7.v1
title: MOESM7 of Targeted bisulfite sequencing of the dynamic DNA methylome

description: Additional file 7: Table S3 GTEx sample list and sequencing statistics.
DOI: 10.6084/m9.figshare.c.3615431_d3.v1
title: Additional file 1: of The Tasmanian devil microbiomeâ  implications for conservation and management

description: Metadata of all 56 microbiome samples.
DOI: 10.6084/m9.figshare.c.3615440_d2.v1
title: Additional file 15: of An integrated analysis tool for analyzing hybridization intensities and genotypes using new-generation population-optimized human arrays

description: Sequence information of the primers used for qPCR. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3615431_d6.v1
title: Additional file 7: of The Tasmanian devil microbiomeâ  implications for conservation and management

description: Unweighted and weighted UniFrac distances between samples from different geographic locations.
DOI: 10.6084/m9.figshare.c.3615443_d3.v1
title: Additional file 2: Table S1. of PCAN: phenotype consensus analysis to support disease-gene association

description: Performance of the pathway consensus approach on 759 new genetics findings published in clinVar between May 2015 and August 2016 depending on the prior knowledge used to identify genes related to the candidate gene of interest. HQ corresponds to high quality network as described in material and methods. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3615431_d7.v1
title: Additional file 8: of The Tasmanian devil microbiomeâ  implications for conservation and management

description: List of OTUs that showed significantly different frequencies between wild and captive devils. Taxa with relative abundance over 1Â % in either wild or captive group are highlighted.
DOI: 10.6084/m9.figshare.27330928
title: Identifying key safety investments needed for arctic shipping via a fuzzy analytic hierarchy process (FAHP) approach

description: The retreating ice coverage and reduced (ice) thickness scientifically recorded in the wider Arctic region, during the last few decades, are transforming it into a more accessible operating environment. Vessels engaged in maritime transport activities can now navigate the already established routes for more extended periods each year. With this background, Arctic shipping routes have attracted the interest of academics and maritime stakeholders because of the potential distance reduction compared to other existing (and often viewed as) conventional routes utilizing the Suez and Panama Canals today. However, the existing Arctic shipping environment requires specific future safety investments. This paper intends to provide input towards better-informed decision-making and identification of priority investments needed to improve the level of safety related to the Northern Sea Route (NSR) and Northwest Passage (NWP). A multi-attribute decision-making methodology, the Fuzzy Analytic Hierarchy Process, is applied to rank the various proposed safety investments. The results indicate that “infrastructure and facility” should come first, followed by “personnel,” “technology,” “measure,” and “management” investments. Ice monitoring and weather forecasting, strengthening Arctic seafaring expertise, and icebreakers stand out as the top three most important future investments required in the region.
DOI: 10.6084/m9.figshare.27330928.v1
title: Identifying key safety investments needed for arctic shipping via a fuzzy analytic hierarchy process (FAHP) approach

description: The retreating ice coverage and reduced (ice) thickness scientifically recorded in the wider Arctic region, during the last few decades, are transforming it into a more accessible operating environment. Vessels engaged in maritime transport activities can now navigate the already established routes for more extended periods each year. With this background, Arctic shipping routes have attracted the interest of academics and maritime stakeholders because of the potential distance reduction compared to other existing (and often viewed as) conventional routes utilizing the Suez and Panama Canals today. However, the existing Arctic shipping environment requires specific future safety investments. This paper intends to provide input towards better-informed decision-making and identification of priority investments needed to improve the level of safety related to the Northern Sea Route (NSR) and Northwest Passage (NWP). A multi-attribute decision-making methodology, the Fuzzy Analytic Hierarchy Process, is applied to rank the various proposed safety investments. The results indicate that “infrastructure and facility” should come first, followed by “personnel,” “technology,” “measure,” and “management” investments. Ice monitoring and weather forecasting, strengthening Arctic seafaring expertise, and icebreakers stand out as the top three most important future investments required in the region.
DOI: 10.15468/dl.3w3caj
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Buchnera nordestina Scatigna"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037940-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvmh5p
title: Occurrence Download

description: A dataset containing 825 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-100.293 21.279,-100.178 21.279,-100.178 21.388,-100.293 21.388,-100.293 21.279))"
 ]
}

 The dataset includes 825 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037939-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3615641_d6.v1
title: Additional file 23: of The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution

description: Table of SNEP detection between RM and YJM strains.
DOI: 10.6084/m9.figshare.c.3615659_d4.v1
title: Additional file 3: Figure S2. of The biodiversity hotspot as evolutionary hot-bed: spectacular radiation of Erica in the Cape Floristic Region

description: Relaxed clock molecular dating results: a) age estimates for clades within Erica inferred using RELTIME [24] with the best tree from RAxML (Additional file 2: Figure S1c); b) and c) phylogeny and relaxed clock molecular dating age estimates for clades within Erica inferred using BEAST [23] on a reduced matrix of 62 taxa b) with and c) without additional constraint based on microfossil evidence (error bars represent 95Â % Posterior Probability (PP) intervals; PP clade support is indicated at nodes). (ZIP 11562Â kb)
DOI: 10.6084/m9.figshare.c.3615659_d5.v1
title: Additional file 1: Table S1. of The biodiversity hotspot as evolutionary hot-bed: spectacular radiation of Erica in the Cape Floristic Region

description: Accessions table including Genbank accession numbers. (XLSX 119Â kb)
DOI: 10.6084/m9.figshare.c.3615671_d2.v1
title: Additional file 2: Table S4. of Improving microRNA target prediction with gene expression profiles

description: Gene Ontology enrichment results for miR-29 TargetExpress predictions using brain or heart expression profiles. (XLSX 346 kb)
DOI: 10.6084/m9.figshare.c.3615641_d8.v1
title: Additional file 2: of The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution

description: List of samples generated and their sequencing depth.
DOI: 10.6084/m9.figshare.c.3615926_d3.v1
title: Additional file 5: of Identification of ISMyo2, a novel insertion sequence element of IS21 family and its diagnostic potential for detection of Mycobacterium yongonense

description: Mycobacterial reference strains used in the present study and specificity of real-time PCR for the detection of the insertion sequence specific to Mycobacterium yongonense. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3615920_d4.v1
title: Additional file 3: Table S3. of The relevance of the side-view in body image scales for public health: an example from two African populations

description: Summary table of the models testing the relationship between bio-anthropometrics and side-views of men body shapes. See TableÂ 1 in main text. (XLSX 6 kb)
DOI: 10.6084/m9.figshare.c.3615929_d2.v1
title: MOESM3 of What is the extent and distribution of evidence on effectiveness of systematic conservation planning around the globe? A systematic map protocol

description: Additional file 3. Data extraction form/coding tool and typologies.
DOI: 10.6084/m9.figshare.c.3615935_d1.v1
title: Additional file 3: Table S3. of Profiling networks of distinct immune-cells in tumors

description: The resultant general immune-cell type (GIT) and DIST marker genes identified using the bioinformatics workflow. (XLS 85Â kb)
DOI: 10.6084/m9.figshare.c.3615926_d4.v1
title: Additional file 6: of Identification of ISMyo2, a novel insertion sequence element of IS21 family and its diagnostic potential for detection of Mycobacterium yongonense

description: Identification of the insertion sequence specific to M. yongonense among clinical isolates by real-time PCR. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3615935_d2.v1
title: Additional file 4: Table S4. of Profiling networks of distinct immune-cells in tumors

description: List of DISTs ratios with significant differences (logrank p values) in the Kaplan Meier curves between groups in highest and lowest quartile for the DIST ratio, in the metastatic melanoma cohort of patients. (XLS 215Â kb)
DOI: 10.6084/m9.figshare.c.3615929_d4.v1
title: MOESM4 of What is the extent and distribution of evidence on effectiveness of systematic conservation planning around the globe? A systematic map protocol

description: Additional file 4. Proposed data presentation matrix.
DOI: 10.6084/m9.figshare.c.3615935_d3.v1
title: Additional file 2: Table S2. of Profiling networks of distinct immune-cells in tumors

description: List of DISTs with significant differences (logrank p values) in the Kaplan Meier curves between groups in highest and lowest quartile for the DIST, in a metastatic melanoma cohort of patients who have undergone chemotherapy. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.c.3615935_d4.v1
title: Additional file 1: Table S1. of Profiling networks of distinct immune-cells in tumors

description: List of distinct immune-cell subtypes (DIST) used consisting of 551 transcriptomes from a total of 173 distinct profiles of immune-cells, characterized in 28 human single-cell datasets with PubMed IDs. (XLS 90Â kb)
DOI: 10.6084/m9.figshare.c.3615926_d6.v1
title: Additional file 3: of Identification of ISMyo2, a novel insertion sequence element of IS21 family and its diagnostic potential for detection of Mycobacterium yongonense

description: IS Myo2 elements in the genomes of M. yongonense DSM 45126 T , M. yongonense MOTT-36Y and M. yongonense MOTT-H4Y. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3615926_d7.v1
title: Additional file 8: of Identification of ISMyo2, a novel insertion sequence element of IS21 family and its diagnostic potential for detection of Mycobacterium yongonense

description: Limit of detection of real-time PCR for the identification of the insertion sequence specific to M. yongonense. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3616172_d6.v1
title: Additional file 6: Table S4. of A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes

description: Results for final 360 Nipi clone candidates in the first and second round of screening; identification of clones provoking severe developmental effect. (XLSX 1068 kb)
DOI: 10.6084/m9.figshare.c.3616172_d7.v1
title: Additional file 8: Table S7. of A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes

description: Species used in phylogenetic clustering listed in the same order as in Fig. 8. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3616172_d8.v1
title: Additional file 3: Table S3. of A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes

description: Results for Hipi clone candidates in the second and third round of screening; categorization of Hipi and Peni clones; clone verification and identification of potential target genes. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.c.3616172_d10.v1
title: Additional file 9: Table S8. of A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes

description: Analysis of spore adhesion following RNAi treatment with Nipi clones; identification of genes potentially involved in spore binding. (XLSX 132 kb)
DOI: 10.6084/m9.figshare.c.3616172_d11.v1
title: Additional file 11: Table S10. of A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes

description: Data from qRT-PCR experiments. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3616217_d1.v1
title: Additional file 1: of Developing a modular architecture for creation of rule-based clinical diagnostic criteria

description: QDM elements used to build an AMI DCDO. An Excel spreadsheet file containing a list of QDM elements related to AMI diagnostic criteria, This is an example for illustrating the DCDO building. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3616214_d2.v1
title: Additional file 1: Table S1. of Infections with Gyrodactylus spp. (Monogenea) in Romanian fish farms: Gyrodactylus salaris Malmberg, 1957 extends its range

description: List of haplotypes included in the 745Â bp cox1 alignment, their GenBank accession numbers, fish host and country of origin. The haplotypes 40 and 41, representing introgressed sequences (see [37]) were not included in any of the analyses, but are included in this table for information. A number of other haplotypes were left out because they were shorter than 745Â bp, but these were not unique haplotypes. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3616436_d5.v1
title: Additional file 9: Table S8. of Identification of oncogenic driver mutations by genome-wide CRISPR-Cas9 dropout screening

description: Top hits for the CHP-212 cell line including genes that are not essential, not present in the top 1 000 for the HCC-827 line, and ranked based on their cumulative screening score and expression level. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.c.3616448_d2.v1
title: Additional file 2: of Working conditions and tuberculosis mortality in England and Wales, 1890â  1912: a retrospective analysis of routinely collected data

description: E&W historical TB mortality data. (CSV 191Â kb)
DOI: 10.6084/m9.figshare.c.3616436_d6.v1
title: Additional file 6: Table S5. of Identification of oncogenic driver mutations by genome-wide CRISPR-Cas9 dropout screening

description: mRNA expression levels for kinases of top the 20 list for HCC-827 cells. Expression of candidate genes was found to be at very high level in the EGFR-mutant HCC-827 parental line, e.g. 128.09 FPKMs for EGFR. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3616436_d8.v1
title: Additional file 4: Table S3. of Identification of oncogenic driver mutations by genome-wide CRISPR-Cas9 dropout screening

description: First 1 000 most depleted genes for HCC-827 cell lines. This table shows the list of 1 000 most depleted genes in the HCC-827 cells along with their sgRNA fold changes at the days 14, 21 and 28. Gene expression of target genes is indicated as average FPKMs across 3 replicates. Cumulative scores are calculated as the sum of log2 FC scores obtained at either two or all three time points. Genes are ranked by the cumulative score obtained at all three time points (e.g. as the sum of log FC scores at days 14, 21 and 28 sorted in ascending order). Essential genes identified in recent genetic screens are reported. Genes expressed at low levels in the parental cell line (FPKM
DOI: 10.15468/dl.35rkwn
title: Occurrence Download

description: A dataset containing 30751 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Passerculus sandwichensis (J.F.Gmelin, 1789)"
 ]
}

 The dataset includes 30751 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037942-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616466_d2.v1
title: MOESM3 of Leaf-residing Methylobacterium species fix nitrogen and promote biomass and seed production in Jatropha curcas

description: Additional file 3: Table S1. Complete table of taxonomic units (strains) derived from surface sterilized Jatropha tissues. Table includes, strains, cultivars, plant tissue, growth media, close relatives, pairwise similarity, class, GenBank ID number, nifH positive, endoglucanase and N-fixing activity. *EzBioCloud software to identify closely related type strains (Kim et al., 2012). The media 869, R2A and Kingâ  S B medium used for isolation of heterotrophic bacteria; AMS medium used for isolation of methylotrophic bacteria; N-free semisolid used for isolation of diazotrophic bacteria.
DOI: 10.6084/m9.figshare.c.3616472_d1.v1
title: Additional file 4: of The efficacy of nudge theory strategies in influencing adult dietary behaviour: a systematic review and meta-analysis

description: Data extraction. (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.c.3616706_d1.v1
title: Additional file 1: of Chronic exposure to particulate matter and risk of cardiovascular mortality: cohort study from Taiwan

description: Population size, area and cohort representation by districts in the Greater Taipei Area, Taiwan. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3616943_d8.v1
title: MOESM9 of 50Â years of amino acid hydrophobicity scales: revisiting the capacity for peptide classification

description: Additional file 11: Table S7. Influence of convex envelope on volume and number of peptides. Represented is the reduction of volume and number of peptides per structure pool (column 1; number of all peptides within the pool, column 2) in percentage for all scenarios with nÂ =Â 5 dimensions in average (columns 3, 4), in minimum (columns 5, 6) and in maximum (columns 7, 8).
DOI: 10.6084/m9.figshare.c.3616970_d1.v1
title: Additional file 1: of Effects of non-supervised low intensity aerobic excise training on the microvascular endothelial function of patients with type 1 diabetes: a non-pharmacological interventional study

description: Supplementary data tables. (ZIP 671 kb)
DOI: 10.6084/m9.figshare.c.3616943_d9.v1
title: MOESM4 of 50Â years of amino acid hydrophobicity scales: revisiting the capacity for peptide classification

description: Additional file 4: Table S3. Amino acid composition in sequence pools. Given are the sequence pool (column 1) and the occurrence of each amino acid in the given pools normalized to 1.
DOI: 10.6084/m9.figshare.c.3616961_d2.v1
title: Additional file 7: of Next-generation sequencing identifies altered whole blood microRNAs in neuromyelitis optica spectrum disorder which may permit discrimination from multiple sclerosis

description: miEAA analysis of miRNAs differentially expressed in NMOSD and CIS/RRMS.á
DOI: 10.6084/m9.figshare.c.3616961_d3.v1
title: Additional file 1: of Next-generation sequencing identifies altered whole blood microRNAs in neuromyelitis optica spectrum disorder which may permit discrimination from multiple sclerosis

description: ANOVA of miRNAs in serum.
DOI: 10.5519/qd.qgttx882
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (42 records)