cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18484510
title: Dataset "The French HSS community speaks out on Open Science: A Top-Down and Bottom-Up taxonomy approach"

description: This dataset is associated with article 7835 of the Special Issue of the Journal of Electronic Publishing. It contains the corpus used in the article, as well as tables of authors and references, and a table of quotations extracted from the corpus. These were used to classify the arguments of French researchers in the Social Sciences and Humanities (SSH).

Please note that these tables were analyzed using the Grist platform and Python. 

Data overview:




jep_7835_authors_table.csv
Corpus authors table (csv)


    jep_7835_references_table.csv
Corpus references table (csv)


    jep_7835_quotations_data.csv
Corpus citations table (csv)


    jep_7853_code_visualization.ipynb
Notebook code visualisation (Python)


    jep_7835_grist_database_code.txt
Relational table coding (txt)


    jep_7853_argument-categories_markmap_V5.md
The taxonomy of arguments (Markdown)


jep_7853_argument_categories_v5.html
The taxonomy of arguments (html)




 

Find below the variables relating to our corpus tables.

Author table variables:








author



Name author (last name, first name)





status



Status of the author at the time of writing the article





affiliation



Affiliated institution





laboratory 



Affiliated (or associated) laboratory





scientific discipline 



Author and reference discipline according to the CNU classification






 

Reference table variables:








reference



Citation of the reference in APA format





url



URL  link





author



First author of the publication (last name, first name)





article title



Reference title (french)





year



Year of publication (YYYY)





journal



Journal or source in which the cited reference was published





editorial status



Type of publication (journal article, press article, academic blog post, etc.)





intellectual status



Approach mentioned by the author





pages



Article length (number of pages)






 

Quotations table variables:








quotation



quotation extracted from the reference (language: French)





page



Page or paragraph number where the cite is located





argument categories



Categories of arguments defined by the authors





themes



Rhemes defined by the authors to which the quotations refer





open science taxonomy



Open Science Taxonomy from Da Silveira and al., 2023.





solution 



If a solution to the argument is mentioned by the author in the text





reference



Linked to the reference column “reference (APA format)”
DOI: 10.5281/zenodo.18484509
title: Dataset "The French HSS community speaks out on Open Science: A Top-Down and Bottom-Up taxonomy approach"

description: This dataset is associated with article 7835 of the Special Issue of the Journal of Electronic Publishing. It contains the corpus used in the article, as well as tables of authors and references, and a table of quotations extracted from the corpus. These were used to classify the arguments of French researchers in the Social Sciences and Humanities (SSH).

Please note that these tables were analyzed using the Grist platform and Python. 

Data overview:




jep_7835_authors_table.csv
Corpus authors table (csv)


    jep_7835_references_table.csv
Corpus references table (csv)


    jep_7835_quotations_data.csv
Corpus citations table (csv)


    jep_7853_code_visualization.ipynb
Notebook code visualisation (Python)


    jep_7835_grist_database_code.txt
Relational table coding (txt)


    jep_7853_argument-categories_markmap_V5.md
The taxonomy of arguments (Markdown)


jep_7853_argument_categories_v5.html
The taxonomy of arguments (html)




 

Find below the variables relating to our corpus tables.

Author table variables:








author



Name author (last name, first name)





status



Status of the author at the time of writing the article





affiliation



Affiliated institution





laboratory 



Affiliated (or associated) laboratory





scientific discipline 



Author and reference discipline according to the CNU classification






 

Reference table variables:








reference



Citation of the reference in APA format





url



URL  link





author



First author of the publication (last name, first name)





article title



Reference title (french)





year



Year of publication (YYYY)





journal



Journal or source in which the cited reference was published





editorial status



Type of publication (journal article, press article, academic blog post, etc.)





intellectual status



Approach mentioned by the author





pages



Article length (number of pages)






 

Quotations table variables:








quotation



quotation extracted from the reference (language: French)





page



Page or paragraph number where the cite is located





argument categories



Categories of arguments defined by the authors





themes



Rhemes defined by the authors to which the quotations refer





open science taxonomy



Open Science Taxonomy from Da Silveira and al., 2023.





solution 



If a solution to the argument is mentioned by the author in the text





reference



Linked to the reference column “reference (APA format)”
DOI: 10.15468/dl.5v9eng
title: Occurrence Download

description: A dataset containing 537 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pitcairnia flammea",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 537 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008666-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6r6vka
title: Occurrence Download

description: A dataset containing 59052 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is UF Florida Museum of Natural History Ornithology"
 ]
}

 The dataset includes 59052 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008647-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jt6r74
title: Occurrence Download

description: A dataset listing the 820 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "Geometry POLYGON((-0.67551 44.8901,-0.67926 44.88652,-0.68641 44.88175,-0.69203 44.87034,-0.70157 44.86353,-0.70719 44.85927,-0.7123 44.85655,-0.71366 44.84786,-0.69271 44.84752,-0.69493 44.83526,-0.67687 44.8344,-0.66393 44.85825,-0.66172 44.86847,-0.66427 44.86983,-0.66512 44.89112,-0.67551 44.8901))",
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862",
 "Year 2016-2026"
 ]
}

 The dataset's 820 records were derived from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008640-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.esd5ys
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Peponidium horridum",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 171 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008667-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31259368
title: <b>Porcine deltacoronavirus nucleocapsid protein inhibits RIG-I signaling pathway by suppressing G3BP1-mediated stress granules formation</b>

description: Porcine deltacoronavirus (PDCoV) is an emerging zoonotic pathogen causing severe diarrhea in suckling piglets. Stress granules (SGs), stress-induced cytoplasmic condensates, are pivotal to the antiviral innate immune response. However, the interaction between PDCoV and SGs remains unclear. Here, we found that PDCoV triggered the formation of SGs during early infection, but these structures gradually disassembled in the late stage, while exogenously induced SGs significantly inhibited PDCoV replication. Mechanistically, we identified the nucleocapsid (N) protein as a potent SGs antagonist. The N protein can interact with Ras-GTPase-activating protein SH3-domain-binding protein 1 (G3BP1, the core component of SGs), thereby disrupting SGs assembly. Furthermore, we found that G3BP1 promotes type I interferon (IFN-I) production by recruiting retinoic acid-inducible gene-I (RIG-I). The PDCoV N protein competitively blocks this G3BP1-RIG-I interaction, leading to impaired IFN-I signaling. In addition, we found that this SG-inhibitory function is conserved across diverse coronaviruses and correlates with structural conservation of the CTD of coronaviruses N proteins. Our findings reveal a novel and conserved immune evasion mechanism in which coronaviruses antagonize the SG-mediated antiviral pathway via their N proteins to promote replication. Importantly, this mechanism is structurally conserved across diverse coronaviruses, thereby identifying the N-CTD as a promising target for broad-spectrum antiviral development.
DOI: 10.6084/m9.figshare.31259368.v5
title: <b>Porcine deltacoronavirus nucleocapsid protein inhibits RIG-I signaling pathway by suppressing G3BP1-mediated stress granules formation</b>

description: Porcine deltacoronavirus (PDCoV) is an emerging zoonotic pathogen causing severe diarrhea and high mortality in suckling piglets. Stress granules (SGs), stress-induced cytoplasmic condensates, are pivotal to the antiviral innate immune response. Although many viruses were found to disrupt SGs assembly to evade host defenses, the interaction between PDCoV and SGs remains unclear. In this study, we found that PDCoV triggered the formation of SGs during the early stage of viral replication, but these structures gradually disassembled in the late stage, while exogenously induced SGs significantly inhibited PDCoV replication. Using a protein screening assay, we identified the nucleocapsid (N) protein as a potent SGs antagonist. Further study revealed that the PDCoV N protein can interact with Ras-GTPase-activating protein SH3-domain-binding protein 1 (G3BP1, the core component of SGs), thereby disrupting SGs assembly. Furthermore, we found that G3BP1 promotes type I interferon (IFN-І) production by recruiting retinoic acid-inducible gene I (RIG-I). The PDCoV N protein competitively blocks this G3BP1-RIG-I interaction, leading to impaired IFN-І signaling. In addition, we found that this SG-inhibitory function is conserved across diverse coronaviruses and correlates with structural conservation of the CTD of coronaviruses N proteins. Our findings reveal a novel and conserved immune evasion mechanism in which coronaviruses antagonize the SG-mediated antiviral pathway via their N proteins to promote replication. Importantly, this mechanism is structurally conserved across diverse coronaviruses, thereby identifying the N-CTD as a promising target for broad-spectrum antiviral development.
DOI: 10.6084/m9.figshare.31259368.v6
title: <b>Porcine deltacoronavirus nucleocapsid protein inhibits RIG-I signaling pathway by suppressing G3BP1-mediated stress granules formation</b>

description: Porcine deltacoronavirus (PDCoV) is an emerging zoonotic pathogen causing severe diarrhea in suckling piglets. Stress granules (SGs), stress-induced cytoplasmic condensates, are pivotal to the antiviral innate immune response. However, the interaction between PDCoV and SGs remains unclear. Here, we found that PDCoV triggered the formation of SGs during early infection, but these structures gradually disassembled in the late stage, while exogenously induced SGs significantly inhibited PDCoV replication. Mechanistically, we identified the nucleocapsid (N) protein as a potent SGs antagonist. The N protein can interact with Ras-GTPase-activating protein SH3-domain-binding protein 1 (G3BP1, the core component of SGs), thereby disrupting SGs assembly. Furthermore, we found that G3BP1 promotes type I interferon (IFN-I) production by recruiting retinoic acid-inducible gene-I (RIG-I). The PDCoV N protein competitively blocks this G3BP1-RIG-I interaction, leading to impaired IFN-I signaling. In addition, we found that this SG-inhibitory function is conserved across diverse coronaviruses and correlates with structural conservation of the CTD of coronaviruses N proteins. Our findings reveal a novel and conserved immune evasion mechanism in which coronaviruses antagonize the SG-mediated antiviral pathway via their N proteins to promote replication. Importantly, this mechanism is structurally conserved across diverse coronaviruses, thereby identifying the N-CTD as a promising target for broad-spectrum antiviral development.
DOI: 10.5281/zenodo.18610863
title: Cosmology Likelihood and Observables in Euclid (CLOE). III. Inference and forecasts. Dataset.

description: Cosmology Likelihood and Observables in Euclid (CLOE). III. Inference and forecasts. Dataset.

Chains resulting from sampling the posterior distribution.
DOI: 10.5281/zenodo.18610864
title: Cosmology Likelihood and Observables in Euclid (CLOE). III. Inference and forecasts. Dataset.

description: Cosmology Likelihood and Observables in Euclid (CLOE). III. Inference and forecasts. Dataset.

Chains resulting from sampling the posterior distribution.
DOI: 10.15468/dl.smnxrc
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aeranthes schlechteri",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 30 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008668-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zudz3
title: Occurrence Download

description: A dataset containing 517 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The reptiles and amphibians collection (RA) of the Muséum national d'Histoire Naturelle (MNHN - Paris)",
 "OccurrenceStatus is Present",
 "TaxonKey is Naja"
 ]
}

 The dataset includes 517 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008669-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3vtes
title: Occurrence Download

description: A dataset containing 2547 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vulpes vulpes vulpes",
 "Year 1899-2026"
 ]
}

 The dataset includes 2547 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008671-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xn3sgk
title: Occurrence Download

description: A dataset containing 16898 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Notopleura"
 ]
}

 The dataset includes 16898 records from 268 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008670-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zg52g4
title: Occurrence Download

description: A dataset containing 15103514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Odonata",
 "Year 1000-2026"
 ]
}

 The dataset includes 15103514 records from 7060 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008628-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4ukgw
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is A catalogue and key to the centipedes (Chilopoda) of Bulgaria"
 ]
}

 The dataset includes 149 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001023-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtbvtn
title: Occurrence Download

description: A dataset containing 7759 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Historical distribution of whales shown by logbook records 1785-1913",
 "Geometry POLYGON((-108.49178 -10.64584,27.85862 -10.64584,27.85862 75.94035,-108.49178 75.94035,-108.49178 -10.64584))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7759 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001024-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/aqf-3hc-hk4
title: Rinodina milvina (Wahlenb.) Th. Fr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/p50-xhb-591
title: Rinodina milvina (Wahlenb.) Th. Fr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/321-cxa-0r4
title: Rinodina exigua (Ach.) Gray

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hyq-1jc-yk6
title: Rinodina exigua (Ach.) Gray

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/463-6z2-j2f
title: Rinodina milvina (Wahlenb.) Th. Fr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/99b-nza-9e0
title: Rinodina milvina (Wahlenb.) Th. Fr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5lg-lqy-611
title: Rinodina exigua (Ach.) Gray

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/re2-zpz-2dq
title: Rinodina milvina (Wahlenb.) Th. Fr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wz2-kmw-bfj
title: Rinodina exigua (Ach.) Gray

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5r6-c8d-3y2
title: Rinodina exigua (Ach.) Gray

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/v8a-msg-ytb
title: Rinodina milvina (Wahlenb.) Th. Fr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/h95-hdq-d1z
title: Rinodina exigua (Ach.) Gray

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/p78-hpy-pej
title: Rinodina milvina (Wahlenb.) Th. Fr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/sns-qz6-n3l
title: Rinodina exigua (Ach.) Gray

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/t2v-ykr-rcv
title: Rinodina malangica (Norman) Arnold

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/khb-bpz-b1a
title: Rinodina exigua (Ach.) Gray

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/8y3-wct-9we
title: Rinodina malangica (Norman) Arnold

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hm5-6t0-bq7
title: Rinodina malangica (Norman) Arnold

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/13m-dst-k6p
title: Rinodina exigua (Ach.) Gray

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/y4b-4cw-kn7
title: Rinodina freyi H. Magn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/abf-qg5-bnx
title: Rinodina exigua (Ach.) Gray

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/q18-p0a-lhd
title: Rinodina malangica (Norman) Arnold

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bd5-wll-bfj
title: Rinodina exigua (Ach.) Gray

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hqn-jem-b7c
title: Rinodina freyi H. Magn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/m74-4cl-8qg
title: Rinodina milvina (Wahlenb.) Th. Fr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/nze-g40-px8
title: Rinodina freyi H. Magn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/epb-3bn-tpa
title: Rinodina freyi H. Magn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/8qz-rw7-5ql
title: Rinodina freyi H. Magn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/t4q-48x-axr
title: Rinodina freyi H. Magn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/2fy-0kj-7j6
title: Rinodina milvina (Wahlenb.) Th. Fr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/72m-w1p-91v
title: Rinodina exigua (Ach.) Gray

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6jb-vf5-fev
title: Rinodina milvina (Wahlenb.) Th. Fr.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/v1n-zs1-ebm
title: Rinodina freyi H. Magn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vh6-gl9-qt2
title: Rinodina freyi H. Magn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rzk-f2z-c9n
title: Rinodina freyi H. Magn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/t1z-80j-rzx
title: Rinodina freyi H. Magn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.fzs9p3
title: Occurrence Download

description: A dataset containing 1039849 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Danish Mycological Society, fungal records database"
 ]
}

 The dataset includes 1039849 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174502-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8aqyvp
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-119.79249 35.23238389999999, -119.7913541 35.2611932, -119.8264796 35.2621205, -119.8276032 35.23331029999999, -119.79249 35.23238389999999))",
 "TaxonKey is one of (Aves)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 327 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176700-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.