cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9809162.v1
title: Additional file 4: of Understanding the molecular mechanisms underlying graft success in grapevine

description: MicroRNAs selected for qPCR analysis, their annotated potential targets, and respective functions. (XLSX 75 kb)
DOI: 10.6084/m9.figshare.9809006
title: MOESM1 of DIF as a pedagogical tool: analysis of item characteristics in ICILS to understand what students are struggling with

description: Additional file 1. R script used in the analyses.
DOI: 10.6084/m9.figshare.9809000
title: Additional file 9: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Microarray data of RNA silencing factors in AZ and FR from C. sinensis fruits (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9809006.v1
title: MOESM1 of DIF as a pedagogical tool: analysis of item characteristics in ICILS to understand what students are struggling with

description: Additional file 1. R script used in the analyses.
DOI: 10.6084/m9.figshare.9809000.v1
title: Additional file 9: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Microarray data of RNA silencing factors in AZ and FR from C. sinensis fruits (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9808988
title: Additional file 6: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Motifs detected in CsAGO, CsRDR and CsDCL proteins (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9808991
title: Additional file 7: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Differential expression analysis of CsAGO, CsDCL and CsRDR genes (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9808982
title: Additional file 5: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Accession numbers of RNA-seq libraries used in this study (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9808988.v1
title: Additional file 6: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Motifs detected in CsAGO, CsRDR and CsDCL proteins (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9808982.v1
title: Additional file 5: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Accession numbers of RNA-seq libraries used in this study (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9808991.v1
title: Additional file 7: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Differential expression analysis of CsAGO, CsDCL and CsRDR genes (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9808970
title: Additional file 3; of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Pfam and SMART domain IDs (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9808970.v1
title: Additional file 3; of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Pfam and SMART domain IDs (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9808976
title: Additional file 4: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: GO term annotation of the analyzed genes (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9808958
title: Additional file 1: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Gene ID for AGO, RDR and DCL gene families used in the phylogenetic analysis (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9808976.v1
title: Additional file 4: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: GO term annotation of the analyzed genes (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9808949
title: Additional file 11: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Primers used for qRT-PCR (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9808958.v1
title: Additional file 1: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Gene ID for AGO, RDR and DCL gene families used in the phylogenetic analysis (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9808949.v1
title: Additional file 11: of Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis

description: Primers used for qRT-PCR (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9808907
title: Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Clusters of Orthologous Genes (COGs) and corresponding functional categories assigned to OGs. (CSV 117 kb)
DOI: 10.6084/m9.figshare.9808907.v1
title: Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Clusters of Orthologous Genes (COGs) and corresponding functional categories assigned to OGs. (CSV 117 kb)
DOI: 10.6084/m9.figshare.9808886
title: Additional file 5 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Pan-genome statistics by species. (CSV 3 kb)
DOI: 10.6084/m9.figshare.9808871
title: Additional file 3 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: OGs by their presence in individual genomes. (CSV 926 kb)
DOI: 10.6084/m9.figshare.9808886.v1
title: Additional file 5 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Pan-genome statistics by species. (CSV 3 kb)
DOI: 10.6084/m9.figshare.9808865
title: Additional file 2 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Summary of orthologous groups (OGs) for 227 genomes of genus Chlamydia. (CSV 362 kb)
DOI: 10.6084/m9.figshare.9808871.v1
title: Additional file 3 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: OGs by their presence in individual genomes. (CSV 926 kb)
DOI: 10.6084/m9.figshare.9808859
title: Additional file 21 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: All polyN tracts of length 5 or more nucleotides in sequences of genes from OG1. Sequences were extracted and scanned prior to automatic correction for frameshifts implemented in the RAST pipeline. (CSV 133 kb)
DOI: 10.6084/m9.figshare.9808859.v1
title: Additional file 21 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: All polyN tracts of length 5 or more nucleotides in sequences of genes from OG1. Sequences were extracted and scanned prior to automatic correction for frameshifts implemented in the RAST pipeline. (CSV 133 kb)
DOI: 10.6084/m9.figshare.9808865.v1
title: Additional file 2 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Summary of orthologous groups (OGs) for 227 genomes of genus Chlamydia. (CSV 362 kb)
DOI: 10.6084/m9.figshare.9808850
title: Additional file 20 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Frameshift and nonsense mutations near homopolymeric tracts of OG1 genes. Only 374 genes with typical length and domain composition were considered. (CSV 6 kb)
DOI: 10.6084/m9.figshare.9808841
title: Additional file 1 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Summary of the analysed genomes. (CSV 24 kb)
DOI: 10.6084/m9.figshare.9808850.v1
title: Additional file 20 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Frameshift and nonsense mutations near homopolymeric tracts of OG1 genes. Only 374 genes with typical length and domain composition were considered. (CSV 6 kb)
DOI: 10.6084/m9.figshare.9808841.v1
title: Additional file 1 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Summary of the analysed genomes. (CSV 24 kb)
DOI: 10.6084/m9.figshare.9808835
title: Additional file 19 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Additional information on proteins from OG1. (CSV 30 kb)
DOI: 10.6084/m9.figshare.9808826
title: Additional file 18 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Orthologous families (OFs) derived by MCL clustering of OGs. (CSV 189 kb)
DOI: 10.6084/m9.figshare.9808835.v1
title: Additional file 19 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Additional information on proteins from OG1. (CSV 30 kb)
DOI: 10.6084/m9.figshare.9808820
title: Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Summary of peripheral genesâ phyletic patterns and tree concordance. (CSV 26 kb)
DOI: 10.6084/m9.figshare.9808826.v1
title: Additional file 18 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Orthologous families (OFs) derived by MCL clustering of OGs. (CSV 189 kb)
DOI: 10.6084/m9.figshare.9808814
title: Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Distribution of OGs with mosaic phyletic patterns across species (all genomes). (CSV 10 kb)
DOI: 10.6084/m9.figshare.9808820.v1
title: Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Summary of peripheral genesâ phyletic patterns and tree concordance. (CSV 26 kb)
DOI: 10.6084/m9.figshare.9808814.v1
title: Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Distribution of OGs with mosaic phyletic patterns across species (all genomes). (CSV 10 kb)
DOI: 10.6084/m9.figshare.9808802
title: Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Distribution of OGs with mosaic phyletic patterns across species (complete genomes only). (CSV 7 kb)
DOI: 10.6084/m9.figshare.9808802.v1
title: Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Distribution of OGs with mosaic phyletic patterns across species (complete genomes only). (CSV 7 kb)
DOI: 10.6084/m9.figshare.9808772
title: Additional file 11 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: OGs with putative pseudogenes by the number of affected genomes in different chlamydial species. Frameshift and nonsense mutations located less than 60 bp upstreamof the gene end or present in a single genome from the corresponding OG were excluded. (CSV 31 kb)
DOI: 10.6084/m9.figshare.9808772.v1
title: Additional file 11 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: OGs with putative pseudogenes by the number of affected genomes in different chlamydial species. Frameshift and nonsense mutations located less than 60 bp upstreamof the gene end or present in a single genome from the corresponding OG were excluded. (CSV 31 kb)
DOI: 10.6084/m9.figshare.9808760
title: Additional file 10 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Predicted frameshift and nonsense mutations in Chlamydial pan-genome. For the analysis of putative pseudogenes, events located less than 60 bp. away from gene end or present in a single genome from the corresponding OG were excluded. (CSV 600 kb)
DOI: 10.6084/m9.figshare.9808760.v1
title: Additional file 10 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

description: Predicted frameshift and nonsense mutations in Chlamydial pan-genome. For the analysis of putative pseudogenes, events located less than 60 bp. away from gene end or present in a single genome from the corresponding OG were excluded. (CSV 600 kb)
DOI: 10.6084/m9.figshare.9808742
title: MOESM1 of Deriving objectively-measured sedentary indices from free-living accelerometry data in rural and urban African settings: a cost effective approach

description: Additional file 1. MAH/UFFE Settings: settings required by the configuration file (MAHUFFE_1903.ini) for identifying Sedentary Breaks (bouts ≥ 1 min for counts ≥ 100).
DOI: 10.6084/m9.figshare.9808742.v1
title: MOESM1 of Deriving objectively-measured sedentary indices from free-living accelerometry data in rural and urban African settings: a cost effective approach

description: Additional file 1. MAH/UFFE Settings: settings required by the configuration file (MAHUFFE_1903.ini) for identifying Sedentary Breaks (bouts ≥ 1 min for counts ≥ 100).
DOI: 10.6084/m9.figshare.9808730
title: MOESM4 of Toxoplasma gondii in small exotic felids from zoos in Europe and the Middle East: serological prevalence and risk factors

description: Additional file 4: Table S3. Zoo data on putative risk factors.
DOI: 10.6084/m9.figshare.9808721
title: MOESM3 of Toxoplasma gondii in small exotic felids from zoos in Europe and the Middle East: serological prevalence and risk factors

description: Additional file 3: Table S2. Individual animal data.
DOI: 10.6084/m9.figshare.9808730.v1
title: MOESM4 of Toxoplasma gondii in small exotic felids from zoos in Europe and the Middle East: serological prevalence and risk factors

description: Additional file 4: Table S3. Zoo data on putative risk factors.
DOI: 10.6084/m9.figshare.9808721.v1
title: MOESM3 of Toxoplasma gondii in small exotic felids from zoos in Europe and the Middle East: serological prevalence and risk factors

description: Additional file 3: Table S2. Individual animal data.
DOI: 10.6084/m9.figshare.9808673
title: Additional file 6. of Conceptualizing patient-centered care for substance use disorder treatment: findings from a systematic scoping review

description: Detailed extracted data. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.9808673.v1
title: Additional file 6. of Conceptualizing patient-centered care for substance use disorder treatment: findings from a systematic scoping review

description: Detailed extracted data. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.9808526
title: HRD score and HRD score components matrix for array data

description: This file contains the array-derived HRD scores and HRD score components (HRD-LOH, LST and NtAI) for the array-derived data.
DOI: 10.6084/m9.figshare.9808529
title: HRD score and HRD score components matrix for original coverage WGS data

description: This file contains the array-derived HRD scores and HRD score components (HRD-LOH, LST and NtAI) for the original coverage WGS-derived data.
DOI: 10.6084/m9.figshare.9808514
title: Segmented copy number data for the downsampled WGS (15X)

description: This file contains the ascatNGS-derived segmentation file for the downsampled WGS(15X coverage) data that was used as an input to the algorithm provided by Marquard et al. 2015 to calculate the HRD score and HRD score components
DOI: 10.6084/m9.figshare.9808517
title: Segmented copy number data for the downsampled WGS (10X)

description: This file contains the ascatNGS-derived segmentation file for the downsampled WGS(10X coverage) data that was used as an input to the algorithm provided by Marquard et al. 2015 to calculate the HRD score and HRD score components
DOI: 10.6084/m9.figshare.9808529.v2
title: HRD score and HRD score components matrix for original coverage WGS data

description: This file contains the array-derived HRD scores and HRD score components (HRD-LOH, LST and NtAI) for the original coverage WGS-derived data.
DOI: 10.6084/m9.figshare.9808511
title: Segmented copy number data for the downsampled WGS (30X)

description: This .tsv file contains the ascatNGS-derived segmentation file for the downsampled WGS(30X coverage) data that was used as an input to the algorithm provided by Marquard et al. 2015 to calculate the HRD score and HRD score components
DOI: 10.6084/m9.figshare.9808529.v1
title: HRD score and HRD score components matrix for original coverage WGS data

description: This file contains the array-derived HRD scores and HRD score components (HRD-LOH, LST and NtAI) for the original coverage WGS-derived data.
DOI: 10.6084/m9.figshare.9808514.v1
title: Segmented copy number data for the downsampled WGS (15X)

description: This file contains the ascatNGS-derived segmentation file for the downsampled WGS(15X coverage) data that was used as an input to the algorithm provided by Marquard et al. 2015 to calculate the HRD score and HRD score components
DOI: 10.6084/m9.figshare.9808505
title: Segmented copy number data for the original WGS

description: This .tsv file contains the ascatNgs-derived segmentation file for the original WGS data that was used as an input to the algorithm provided by Marquard et al. 2015 to calculate the HRD score and HRD score components
DOI: 10.6084/m9.figshare.9808517.v2
title: Segmented copy number data for the downsampled WGS (10X)

description: This file contains the ascatNGS-derived segmentation file for the downsampled WGS(10X coverage) data that was used as an input to the algorithm provided by Marquard et al. 2015 to calculate the HRD score and HRD score components
DOI: 10.6084/m9.figshare.9808496
title: Segmented copy number data for the array

description: This file contains the ASCAT-derived segmentation data that was used as an input to the algorithm provided by Marquard et al. 2015 to calculate the HRD score and HRD score components
DOI: 10.6084/m9.figshare.9808517.v1
title: Segmented copy number data for the downsampled WGS (10X)

description: This file contains the ascatNGS-derived segmentation file for the downsampled WGS(10X coverage) data that was used as an input to the algorithm provided by Marquard et al. 2015 to calculate the HRD score and HRD score components
DOI: 10.6084/m9.figshare.9808484
title: matlab.mat

description: <b>A high-quality hourly, daily and monthly solar irradiance dataset in China during 1981-2014</b><b> based on MERRA-2 Reanalysis products</b> Wenmin Qin<sup>1</sup>, Lunche Wang<sup>1</sup>*, Ming Zhang<sup>1</sup>, Lan Feng<sup>1</sup>, Yulong Zhong<sup>1</sup>, Qiqi Zhu<sup>1</sup>，Hejin Fang<sup>1</sup>, Hong Cai<sup>1</sup>, Chao Yang<sup>2</sup>
DOI: 10.6084/m9.figshare.9808472
title: Supplementary Data description

description: This file contains details of Supplementary Data 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 & 12 and should be read for full descriptions of these files.<br>
DOI: 10.6084/m9.figshare.9808463
title: Supplementary Data 10

description: This file contains the FANTOM5 gene specificity data used in our study (as described in Methods: Specificity of gene expression).<br>
DOI: 10.6084/m9.figshare.9808466
title: Supplementary Data 11

description: This file contains the ClinVar pathogenic variants that were spiked into 1000 Genomes samples (as described in Methods: Simulated disease exomes).<br>
DOI: 10.6084/m9.figshare.9808469
title: Supplementary Data 12

description: This zip file contains the three spike-in batches described in Methods (Simulated disease exomes).<br>
DOI: 10.6084/m9.figshare.9808460
title: Supplementary Data 9

description: This file contains the GTEx gene specificity data used in our study (as described in Methods: Specificity of gene expression).<br>
DOI: 10.6084/m9.figshare.9808463.v2
title: Supplementary Data 10

description: This file contains the FANTOM5 gene specificity data used in our study (as described in Methods: Specificity of gene expression).<br>
DOI: 10.6084/m9.figshare.9808463.v1
title: Supplementary Data 6

description: This file contains the FANTOM5 gene specificity data used in our study (as described in Methods: Specificity of gene expression).<br>
DOI: 10.6084/m9.figshare.9808466.v2
title: Supplementary Data 11

description: This file contains the ClinVar pathogenic variants that were spiked into 1000 Genomes samples (as described in Methods: Simulated disease exomes).<br>
DOI: 10.6084/m9.figshare.9808472.v1
title: Supplementary Data description

description: This file contains details of Supplementary Data 1, 2, 3, 4, 5, 6, 7 and 8 and should be read for full descriptions of these files.<br>
DOI: 10.6084/m9.figshare.9808457
title: Supplementary Data 8

description: This file contains the FANTOM5 gene expression data used in our study (as described in Methods: Gene expression data).<br>
DOI: 10.6084/m9.figshare.9808466.v1
title: Supplementary Data 7

description: This file contains the ClinVar pathogenic variants that were spiked into 1000 Genomes samples (as described in Methods: Simulated disease exomes).<br>
DOI: 10.6084/m9.figshare.9808469.v1
title: Supplementary Data 8

description: This zip file contains the three spike-in batches described in Methods (Simulated disease exomes).<br>
DOI: 10.6084/m9.figshare.9808445
title: Supplementary Data 4

description: This file contains a R list of ClinVar pathogenic variants for the 1,879 HPO terms considered in our study (as described in Methods: Pathogenic variants).<br>
DOI: 10.6084/m9.figshare.9808454
title: Supplementary Data 6

description: This file contains the GTEx gene expression data used in our study (as described in Methods: Gene expression data).<br>
DOI: 10.6084/m9.figshare.9808451
title: Supplementary Data 5

description: This file contains the benign variants used in our study with selected dbNSFP annotations (as described in Methods: Benign variants).<br>
DOI: 10.6084/m9.figshare.9808460.v2
title: Supplementary Data 9

description: This file contains the GTEx gene specificity data used in our study (as described in Methods: Specificity of gene expression).<br>
DOI: 10.6084/m9.figshare.9808457.v2
title: Supplementary Data 8

description: This file contains the FANTOM5 gene expression data used in our study (as described in Methods: Gene expression data).<br>
DOI: 10.6084/m9.figshare.9808460.v1
title: Supplementary Data 5

description: This file contains the GTEx gene specificity data used in our study (as described in Methods: Specificity of gene expression).<br>
DOI: 10.6084/m9.figshare.9808454.v2
title: Supplementary Data 6

description: This file contains the GTEx gene expression data used in our study (as described in Methods: Gene expression data).<br>
DOI: 10.6084/m9.figshare.9808457.v1
title: Supplementary Data 4

description: This file contains the FANTOM5 gene expression data used in our study (as described in Methods: Gene expression data).<br>