cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7kgnd3
title: Occurrence Download

description: A dataset containing 290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84)",
 "OccurrenceStatus is Present",
 "TaxonKey is Testudinidae"
 ]
}

 The dataset includes 290 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011600-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cp59vm
title: Occurrence Download

description: A dataset containing 63524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Galinsoga parviflora Cav."
 ]
}

 The dataset includes 63524 records from 759 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011601-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22748393
title: Pleurodeles Waltl Transcriptome assembly

description: <b>Files Description:</b><b>Trinity.min200.id.fsa.gz:</b> Pleurodeles Waltl transcriptome assembly fasta file.<b>Trinity_TRANSCRIPT2GENE_NAME.zip:</b> tx2gene table, use it with tximport R package to summarize transcripts counts into genes.<b>org.Pwaltl.eg.db.zip:</b> annotation package include the GO (Gene Ontology) and KO (KEGG Orthology) terms annotation. Use it with the summarized gene counts to perform enrichment analysis using the clusterProfiler R package. [to install in R use the command:<br>devtools::install_local("path/org.Pwaltl.eg.db.zip", repos = NULL, type="source") ]<b>trinotate_annotation_report.uniq.xls.gz:</b> Full annotation report from trinotate workflow (Swiss-Prot and TrEMBL, Pfam, GO terms, etc).<b>Trinity.cds.fsa.gz</b>, <b>Trinity.pep.fsa.gz:</b> ORF prediction and protein using transdecoder.<b>Limb_gene_counts_tximport.xlsx:</b> gene abundances and counts using tximport package with tx2gene table.<b>Limb_DEG.xlsx:</b> Differentially expressed genes in different limb stages when compared to 0dpa.<b>Limb_Enrichment_BP_KO.xlsx:</b> GO Biological Processes GSEA, and KO ortholog GSEA results in different limb stages when compared to 0dpa.<b>Commands.txt:</b> key commands used in the assembly process.<b>all_tissues_gene_counts_raw</b>: gene counts for all tissues analyzed.<b>all_tissues_gene_counts_vst</b>: VST counts for all tissues analyzed using DESeq2 package.<br><b>Abstract:</b>In this study, we present an updated transcriptome assembly for the Iberian ribbed newt, Pleurodeles waltl (<i>P. waltl</i>), a widely used model organism in regeneration research. The existing publicly available transcriptome for this species is limited by the inclusion of only three libraries from the limb and two from the heart, tissues of particular interest for regeneration studies. Additionally, the previous annotation was limited, reducing the utility of the dataset for further in-depth research. To provide a more complete transcriptome with a more comprehensive annotation, we utilized 58 previously published and 9 newly sequenced libraries, expanding the available transcriptomic data for key tissues, especially limb and heart tissues. Our assessment demonstrates that the new assembly offers a more comprehensive representation of reads and proteins compared to previous versions. Furthermore, we significantly improved the functional annotation by using the Trinotate pipeline, which includes the identification of complete ORFs, Pfam motifs, gene names, GO terms, and KEGG Orthology, facilitating more robust transcriptomic analyses. We also examined various stages of limb regeneration and development, gaining insights into the key signaling pathways involved. This work provides a valuable resource for researchers investigating the molecular mechanisms underlying <i>P. waltl</i><i>'s</i> regenerative abilities, enabling more detailed gene expression studies and broader biological insights.
DOI: 10.15468/dl.epse34
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tamarindus indica L.",
 "Year 1970-2024"
 ]
}

 The dataset includes 58 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011606-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9758679
title: Notificações de Síndrome Gripal em SC - 2024
DOI: 10.15468/dl.fqgyzd
title: Occurrence Download

description: A dataset containing 2021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is Saimiri cassiquiarensis (Lesson, 1840)"
 ]
}

 The dataset includes 2021 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011607-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.atrwp6
title: Occurrence Download

description: A dataset containing 1253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pteronura brasiliensis Zimmermann, 1780",
 "Year 2000-2024"
 ]
}

 The dataset includes 1253 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011609-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vec4dk
title: Occurrence Download

description: A dataset listing the 54 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Anfibios y reptiles del municipio de Cuetzalan del Progreso, Puebla"
 ]
}

 The dataset's 54 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011602-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yge77d
title: Occurrence Download

description: A dataset containing 1871 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Araucaria angustifolia (Bertol.) Kuntze)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1871 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011610-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9yzm2p
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nepenthes peltata Sh.Kurata"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011612-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.svpe3t
title: Occurrence Download

description: A dataset containing 127701 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Galinsoga quadriradiata Ruiz & Pav."
 ]
}

 The dataset includes 127701 records from 876 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011604-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17602758
title: Wrapped interferograms and coherence Achoma landslide

description: Raw interferograms and interferometric coherence used for analysis presented in the paper:

Dini, B., Lacroix, P., and Doin, M.-P.: Beyond and beneath displacement time series: towards InSAR-based early warnings and deformation analysis of the Achoma landslide, Peru, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2025-1945, 2025.

 

The interferograms are not unwrapped and they are processed with the parameters specified in the paper.
DOI: 10.5281/zenodo.17602759
title: Wrapped interferograms and coherence Achoma landslide

description: Raw interferograms and interferometric coherence used for analysis presented in the paper:

Dini, B., Lacroix, P., and Doin, M.-P.: Beyond and beneath displacement time series: towards InSAR-based early warnings and deformation analysis of the Achoma landslide, Peru, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2025-1945, 2025.

 

The interferograms are not unwrapped and they are processed with the parameters specified in the paper.
DOI: 10.15468/dl.hzbfg6
title: Occurrence Download

description: A dataset containing 5440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Linnaea borealis L."
 ]
}

 The dataset includes 5440 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174611-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2gukq
title: Occurrence Download

description: A dataset containing 612555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poa annua L.",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 612555 records from 2561 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0261768-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kyf8dy
title: Occurrence Download

description: A dataset containing 4535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cardamine occulta Hornem.",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4535 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026307-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wkkul4
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Araucaria Juss.",
 "BasisOfRecord is Fossil"
 ]
}

 The dataset includes 194 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010846-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkw236
title: Occurrence Download

description: A dataset listing the 555 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((28.2458 -25.46398,28.4067 -25.46226,28.40756 -25.35204,28.26498 -25.35433,28.2458 -25.46398))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 555 records were derived from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012501-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73jjf9
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyperacanthus ravinensis (Baill. ex Drake) Rakotonas. & A.P.Davis"
 ]
}

 The dataset includes 39 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026283-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.otwxdg
title: Occurrence Download

description: A dataset containing 39648 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Geometry POLYGON((171.42 -38.48,171.42 -34.97,178.31 -34.97,178.31 -38.48,171.42 -38.48))",
 "DatasetKey is ``South Western Pacific Regional OBIS Data provider for the NIWA Marine Biodata Information System``"
 ]
}

 The dataset includes 39648 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010847-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bw2g7c
title: Occurrence Download

description: A dataset containing 76904 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex paniculata L.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 76904 records from 361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012524-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hc3vnt
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypericophyllum hessii (Merxm.) D.J.N.Hind"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026304-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qda9ut
title: Occurrence Download

description: A dataset containing 778 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microtus arvalis (Pallas, 1779)",
 "Country is Germany",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 778 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010847-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdpnq5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gleditsia microphylla Isely",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026325-240321170329656/datasets/export for details.
DOI: 10.15468/dl.8ys4cu
title: Occurrence Download

description: A dataset containing 65836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex pallescens L.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 65836 records from 395 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012506-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkhyvj
title: Occurrence Download

description: A dataset containing 295 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polistes rothneyi Cameron, 1900"
 ]
}

 The dataset includes 295 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010847-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ba8zrw
title: Occurrence Download

description: A dataset containing 340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea cholulensis Kunth",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 340 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026284-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfxxsb
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vultur gryphus Linnaeus, 1758"
 ]
}

 The dataset includes 29 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022137-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwwkkt
title: Occurrence Download

description: A dataset containing 35854 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxybasis glauca (L.) S.Fuentes, Uotila & Borsch",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35854 records from 476 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026327-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrlqjj
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiroptera",
 "Country is Lesotho"
 ]
}

 The dataset includes 43 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010848-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xa3fep
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Achillea rupestris Huter, Porta & Rigo"
 ]
}

 The dataset includes 54 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012516-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgck3m
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypericum acmosepalum N.Robson"
 ]
}

 The dataset includes 186 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026317-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jk848s
title: Occurrence Download

description: A dataset containing 10903120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 10903120 records from 2371 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022168-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4b6aqg
title: Occurrence Download

description: A dataset containing 6009 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elassomatidae"
 ]
}

 The dataset includes 6009 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055737-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.utgjvq
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ocotea barbatula Lundell"
 ]
}

 The dataset includes 26 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003177-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmqrs8
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bacteria from Penguin Guano, Antarctica"
 ]
}

 The dataset includes 70 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002733-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y298pw
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euzaphlegidae"
 ]
}

 The dataset includes 64 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055760-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtv2nh
title: Occurrence Download

description: A dataset containing 163 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orthion subsessile (Standl.) Standl. & Steyerm."
 ]
}

 The dataset includes 163 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003177-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.87eu3b
title: Occurrence Download

description: A dataset containing 8227 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhus glabra L."
 ]
}

 The dataset includes 8227 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067447-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drkv66
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is 2a7e3080-28a9-11dd-97cd-b8a03c50a862",
 "TaxonKey is Crocodylia"
 ]
}

 The dataset includes 12 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060371-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n6nyho
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Dissothrix imbricata (Gardner) B.L.Rob.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035285-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.