cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.32rb2
title: Data from: Prior information and social experience influence male reproductive decisions

description: Increasing attention has focused on understanding how past experiences can
 influence and explain variation in mating preferences among individuals.
 We examined how previous social experiences affected courtship preferences
 in Drosophila melanogaster by exposing individual males to different
 frequency distributions of high- and low-quality (HQ and LQ) females and
 by allowing them to copulate with either a HQ or LQ mate. For a male, a
 large female represents a high-quality mate while a small female is a
 low-quality mate. We subsequently quantified the courtship behavior of
 these individuals in the presence of one HQ and one LQ female. Two aspects
 of male courtship behavior were significantly influenced by prior
 experience. Males previously exposed to a population of 75% HQ females
 more often initially courted the HQ than LQ female and more strongly
 biased overall courtship activity toward the HQ female compared to males
 previously exposed to a population of 25% HQ females. Furthermore, for
 some males, the type of female a male mated with in the experience phase
 influenced the type of female he first courted in the test phase: males
 that experienced a population containing only 25% HQ females and who mated
 with a LQ female in the experience phase, more often courted the LQ female
 first in the test phase while all other males biased courtship toward the
 HQ female. Our results indicate that information gained about the relative
 abundance of mate quality types and previous mating experience can affect
 future mating behavior.
description: Data for
 BEHECO-2017-0173Data for
 BEHECO-2017-0173datafordryad.xlsx
DOI: 10.5061/dryad.jv25p
title: Data from: The active metabolic rate predicts a male spider’s proximity to females and expected fitness

description: Conspicuous traits, such as weaponry and body size, are often correlated
 with fitness. By contrast, we understand less about how inconspicuous
 physiological traits affect fitness. Not only is linking physiology
 directly to fitness a challenge, but in addition, behavioural studies most
 often focus on resting or basal metabolic rates, resulting in a poor
 understanding of how active metabolic rates affect fitness. Here we use
 the golden orb-web spider (Nephila plumipes), a species for which
 proximity to a female on the web predicts a male's paternity share,
 to examine the role of resting and active metabolic rates in fitness.
 Using a semi-natural experimental set-up, we show that males closer to a
 female have higher active metabolic rates than males further from females.
 This higher metabolic activity is paralleled by increased citrate synthase
 activity, suggesting greater mitochondrial densities. Our results link
 both higher active metabolic rates and increased citrate synthase activity
 with fitness. Coupled with the behaviour and life history of N. plumipes,
 these results provide insight into the evolution of physiological systems.
description: Kasumovic&Seebacher
 Data
DOI: 10.17630/54e6d2ea-33bc-49c2-83c1-b3345e849a12
title: An insight on the magnetic behavior of V- MXene (dataset)
DOI: 10.5061/dryad.s8g15
title: Data from: Sex-specific responses to sexual familiarity, and the role of olfaction in Drosophila

description: Studies of mating preferences have largely neglected the potential effects
 of individuals encountering their previous mates (‘directly sexually
 familiar’), or new mates that share similarities to previous mates, e.g.
 from the same family and/or environment (‘phenotypically sexually
 familiar’). Here, we show that male and female Drosophila melanogaster
 respond to the direct and phenotypic sexual familiarity of potential mates
 in fundamentally different ways. We exposed a single focal male or female
 to two potential partners. In the first experiment, one potential partner
 was novel (not previously encountered) and one was directly familiar
 (their previous mate); in the second experiment, one potential partner was
 novel (unrelated, and from a different environment from the previous mate)
 and one was phenotypically familiar (from the same family and rearing
 environment as the previous mate). We found that males preferentially
 courted novel females over directly or phenotypically familiar females. In
 contrast, females displayed a weak preference for directly and
 phenotypically familiar males over novel males. Sex-specific responses to
 the familiarity of potential mates were significantly weaker or absent in
 Orco1 mutants, which lack a co-receptor essential for olfaction,
 indicating a role for olfactory cues in mate choice over novelty.
 Collectively, our results show that direct and phenotypic sexual
 familiarity is detected through olfactory cues and play an important role
 in sex-specific sexual behaviour.
description: Data for
 ArchiveTitle of each excel file
 describes the experimentsData archive
 2.zip
DOI: 10.5061/dryad.jr3kh
title: Data from: Species’ traits explain differences in Red list status and long-term population trends in longhorn beetles

description: Some species are more likely to go extinct than others and this is
 partially due to species' traits. Therefore, it is important to
 establish links between traits and extinction risks. Different aspects of
 a species' biology also relates to different sources of threat, such
 as fragmented populations or low population growth rate. In a comparative
 study of Swedish longhorn beetles (Coleoptera: Cerambycidae), we related
 species' traits to two aspects of extinction risk – population
 decline and small/fragmented populations – measured by long-term
 population trends and IUCN Red list classifications. Trait relationships
 were analysed with generalized linear models and multi-model inference. We
 found that extinction risk generally increased with longer generation
 times, corresponding to slower life histories. Adult activity period was
 also related to both metrics of extinction risk, but in different ways. We
 also found that extinction risk increased with larval host plant
 specialization, but only for Red list classification. Large body size was
 related to increased Red list classification in species overwintering as
 adults, and overwintering stage also structured the effects of several
 other traits. Our results show that both intrinsic demographic traits and
 ecological traits affect extinction risks, and also suggest that risks are
 shaped by multiple mechanisms. Therefore, researchers should carefully
 choose their metric of extinction risk for comparative studies, as the Red
 list classification may best capture current risk, whereas population
 trends can be used more proactively but may reflect historical
 relationships between traits and extinction risk.
description: Species' traits,
 trend and red list data for longhorn beetles, SwedenData set of
 species' traits for longhorn beetles living in Sweden along with
 estimates of long-term population trends covering 1920 to 2000 and
 regional 2010 IUCN red list classifications. The data has been used to
 study the relationship between species' traits and two aspects of
 extinction risk (long-term trends and red list classification). The
 information of species traits are compiled from published sources, and
 mainly describe information relevant for cerambycid species in Nordic
 conditions. For further information see the attached
 metafile.AnimCons_speciesdata.zip
DOI: 10.5061/dryad.k5268
title: Data from: More taxonomists describing significantly fewer species per unit effort may indicate that most species have been discovered

description: Recent studies show that there are more taxonomists describing species in
 recent decades than before. However, whether the rate of increase in
 number of taxonomists is greater than the rate of new species description
 has been questioned. We found a statistically significant decline in the
 proportion of species being described per number of taxonomists (i.e.
 authors of recent species descriptions) during the past century for (a)
 families of insects that had been stated not to show this trend, and (b) a
 sample of over 0.5 million marine, terrestrial and freshwater species. We
 suggest that this decreased ‘catch’ of species per taxonomic effort,
 despite scientists’ greater ability to explore and sample habitats, means
 it is getting harder to discover new species, and supports recent studies
 suggesting that two-thirds of all species have been named.
description: Species per
 taxonomistThe original data
 sources were the Catalogue of Life (CoL) for non-marine, and World
 Register of Marine Species (WoRMS), for marine species; as described in
 the publication: Costello MJ, Wilson SP, Houlding B. 2012. Predicting
 total global species richness using rates of species description and
 estimates of taxonomic effort. Systematic Biology 61(5): 871-883. This
 file provides the values used in the graphs in this paper, namely the
 number of species described per author per year since 1761 to 2000 for
 each of the above datasets.Spp per taxonomist data
 Dryad.csvSpecies per author per
 decadeUses the same source
 data as in: Costello MJ, Wilson SP, Houlding B. 2012. Predicting total
 global species richness using rates of species description and estimates
 of taxonomic effort. Systematic Biology 61(5): 871-883. This file contains
 the number and percentage of authors who described one or more species per
 decade for the non-marine (CoL) and marine (WoRMS)
 datasets.one spp authors per decade
 dyrad.csvRegression
 dataDetails of regression
 analyses, including start year of correlation, fitted slope, p-value and
 R^2 coefficient for the Chalicoidea and Ichneumenoidea
 datasets.Table 1A Chalicoidea
 Ichneumenoidea regressions.csvCoL WoRMS
 regressionsDetails of regression
 analyses, including start year of correlation, fitted slope, p-value and
 R^2 coefficient for the non-marine (CoL) and marine (WoRMS) species
 datasets.Table 2A CoL WoRMS
 regressions.csv
DOI: 10.5061/dryad.b9h4h
title: Data from: Increased habitat connectivity homogenizes freshwater communities: historical and landscape perspectives

description: 1. Increases in habitat connectivity can have consequences for taxonomic,
 functional, and genetic diversity of communities. Previously isolated
 aquatic habitats were connected with canals and pipelines in the largest
 water development project in US history, the Columbia Basin Project
 (eastern Washington, USA), which also altered environmental conditions;
 however, the ecological consequences are largely unknown. 2. Using a
 historical dataset, we examined long-term patterns in zooplankton
 communities, water chemistry and clarity, testing the hypothesis that
 increased connectivity will result in taxonomic homogenization. Further,
 we tested contemporary drivers of communities using a comprehensive set of
 environmental and landscape variables. 3. Waterbodies were sampled for
 zooplankton community composition as well as physical and chemical
 variables inside and outside the Columbia Basin Project using methods
 consistent with historical studies. 4. We found significant declines in
 salinity inside the Columbia Basin Project, whereas changes in water
 clarity were prevalent across all waterbodies. Increased connectivity via
 canals homogenized zooplankton communities over time, as well as
 increasing regional richness. Other long-term changes in zooplankton
 communities may be related to climate change, invasive species, and
 land-use changes. 5. Synthesis and applications. Though canals may offer
 species spatial refugia, homogenization may decrease resilience to
 environmental stressors. These new hybrid aquatic landscapes, or
 hydroscapes, should be considered carefully in future water development,
 including specific plans for monitoring of species and environmental
 conditions, as well as mitigation of undesirable conditions and/or
 non-native species.
description: Objective 1: Comparison
 of long-term changes in species presence/absenceContemporary species
 presence/absence obtained from pelagic and/or shoreline tows (2012-2013);
 taxonomic level matches historical data.Strecker&Brittain_Objective1.csvObjective 2: Contemporary drivers of speciesContemporary relative abundance of species obtained from pelagic and/or shoreline tows (2012-2013).Strecker&Brittain_Objective2.csv
DOI: 10.15468/dl.jjgm6g
title: Occurrence Download

description: A dataset containing 2100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Zingiber officinale"
 ]
}

 The dataset includes 2100 records from 279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001406-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.5d44q
title: Data from: Low fertility of wild hybrid male flycatchers despite recent divergence

description: Postzygotic isolation may be important for maintaining species boundaries,
 particularly when premating barriers are incomplete. Little is known about
 the course of events leading from minor environmental mismatches affecting
 hybrid fitness to severe genetic incompatibilities causing sterility or
 inviability. We investigated whether reduced reproductive success of
 hybrid males was caused by suboptimal sperm traits or by more severe
 genetic incompatibilities in a hybrid zone of pied (Ficedula hypoleuca)
 and collared flycatchers (F. albicollis) on the island of Öland, Sweden.
 About 4 per cent hybridization is observed in this population and all
 female hybrids are sterile. We found no sperm in the ejaculates of most
 sampled hybrid males, and sperm with abnormal morphology in two hybrids.
 Furthermore, none of the hybrids sired any offspring because of high
 levels of hatching failure and extra-pair paternity in their nests. These
 results from a natural hybrid zone suggest that the spermatogenesis of
 hybrid males may become disrupted despite little genetic divergence
 between the parental species.
description: Ficedula hybrid males
 reproductive successThis file describes data
 collected on hybrid males in the field from 2010 to 2012 on the island of
 Öland, Sweden. It gives information on the nestbox where the bird was
 breeding, his species, the genetic species after genotyping, the species
 of the female the hybrid male paired with, information of previous chicks
 recorded for those females, the number of chicks in the nests of hybrid
 males and information on the hybrid male's paternity, the number of
 unhatched eggs collected, the presence or absence of sperm on the
 perivitelline layer of unhatched eggs and the presence/absence of sperm in
 the ejaculates. DNA analyses were performed from blood samples, ejaculates
 and unhatched eggs were preserved in formalin and the perivitelline layer
 of unhatched eggs was scanned for sperm using fluorescence
 microscopy.data_biol.let.2013_MurielleÅlund.xlsx
DOI: 10.5061/dryad.jj0fg
title: Data from: Riding the crimson tide: mobile terrestrial consumers track phenological variation in spawning of an anadromous fish

description: When resources are spatially and temporally variable, consumers can
 increase their foraging success by moving to track ephemeral feeding
 opportunities as these shift across the landscape; the best examples
 derive from herbivore-plant systems where grazers migrate to capitalize on
 the seasonal waves of vegetation growth. We evaluated whether analogous
 processes occur in watersheds supporting spawning Pacific salmon, asking
 whether seasonal activity of predators and scavengers shift spatial
 distributions to capitalize on asynchronous spawning among populations of
 salmon. Both glaucous-winged gulls and coastal brown bears showed distinct
 shifts in their spatial distributions over the course of the summer,
 reflecting the shifting distribution of spawning sockeye salmon, which was
 associated with variation in water temperature among spawning sites. By
 tracking the spatial and temporal variation in the phenology of their
 principal prey, consumers substantially extended their foraging
 opportunity on a superabundant, yet locally ephemeral, resource. Ecosystem
 based fishery management efforts that seek to balance trade-offs between
 fisheries and ecosystem processes supported by salmon should therefore
 assess the importance of life-history variation, particularly in
 phenological traits, for maintaining important ecosystem functions such as
 providing marine-derived resources for terrestrial predators and
 scavengers.
description: Schindler et al.
 dataObservations of bears
 and gulls taken throughout the Wood River system of SW Alaska. Bear
 observations are expressed as the total number of years observed per day
 by camera trap. Gull data are expressed as the total number of gulls
 observed at sites when surveys occurred.
DOI: 10.6084/m9.figshare.30048634
title: Whale shark genome assembly sRhiTyp1.2 peptide sequences

description: Gene models predicted on whale shark genome assembly sRhiTyp1.2 reported in Kawaguchi et al. produced by Squalomix consortium
DOI: 10.5281/zenodo.17975938
title: SHM_415357_HST_3D

description: Photogrammetric 3D model of a Mesolithic pecked axe from Sweden, currently held in the collections of the National Historical Museums in Stockholm.

Link to the Dynamic Collection platform  

https://dyncolldev.ht.lu.se/plus/artifact_view.php?item=671

Link to Sök I Samlingarna  

https://samlingar.shm.se/object/44EE72CA-708A-4E02-9392-4D30B5C8DEC4
DOI: 10.6084/m9.figshare.30048634.v1
title: Whale shark genome assembly sRhiTyp1.2 peptide sequences

description: Gene models predicted on whale shark genome assembly sRhiTyp1.2 reported in Kawaguchi et al. produced by Squalomix consortium
DOI: 10.6084/m9.figshare.30048634.v2
title: Whale shark genome assembly sRhiTyp1.2 peptide sequences

description: Gene models predicted on whale shark genome assembly sRhiTyp1.2 reported in Kawaguchi et al. produced by Squalomix consortium
DOI: 10.5281/zenodo.17975937
title: SHM_415357_HST_3D

description: Photogrammetric 3D model of a Mesolithic pecked axe from Sweden, currently held in the collections of the National Historical Museums in Stockholm.

Link to the Dynamic Collection platform  

https://dyncolldev.ht.lu.se/plus/artifact_view.php?item=671

Link to Sök I Samlingarna  

https://samlingar.shm.se/object/44EE72CA-708A-4E02-9392-4D30B5C8DEC4
DOI: 10.5061/dryad.cn66t
title: Data from: Sex-determining chromosomes and sexual dimorphism: insights from genetic mapping of sex expression in a natural hybrid Fragaria × ananassa subsp. cuneifolia

description: We studied the natural hybrid (Fragaria × ananassa subsp. cuneifolia)
 between two sexually dimorphic octoploid strawberry species (Fragaria
 virginiana and Fragaria chiloensis) to gain insight into the dynamics of
 sex chromosomes and the genesis of sexual dimorphism. Male sterility is
 dominant in both the parental species and thus will be inherited
 maternally, but the chromosome that houses the sex-determining region
 differs. Thus, we asked whether (1) the cytotypic composition of hybrid
 populations represents one or both maternal species, (2) the
 sex-determining chromosome of the hybrid reflects the location of male
 sterility within the maternal donor species and (3) crosses from the
 hybrid species show less sexual dimorphism than the parental species. We
 found that F. × ananassa subsp. cuneifolia populations consisted of both
 parental cytotypes but one predominated within each population. Genetic
 linkage mapping of two crosses showed dominance of male sterility similar
 to the parental species, however, the map location of male sterility
 reflected the maternal donor in one cross, but not the other. Moreover,
 female function mapped to a single region in the first cross, but to two
 regions in the second cross. Aside from components of female function
 (fruit set and seed set), other traits that have been found to be
 significantly sexually dimorphic in the pure species were either not
 dimorphic or were dimorphic in the opposite direction to the parental
 species. These results suggest that hybrids experience some disruption of
 dimorphism in secondary sexual traits, as well as novel location and
 number of quantitative trait locus (QTL) affecting sex function.
description: Cuneifolia_data_files_readme_filesDryadfiles.zip
DOI: 10.5061/dryad.03003
title: Data from: Cognition, personality, and stress in budgerigars, Melopsittacus undulatus

description: To study the fitness effects of individual variation in cognitive traits,
 it is paramount to understand whether traits such as personality and
 physiological stress influence cognitive performance. We first tested
 whether budgerigars showed both consistent personalities and cognitive
 performance across time and tasks. We tested object and food neophobia,
 and exploratory behavior. We measured cognitive performance in
 habituation, ability to solve foraging problems, spatial memory, and seed
 discrimination tasks. Budgerigars showed consistency in their neophobic
 tendencies and these tendencies were associated with their exploratory
 behavior. Birds were also consistent in how they performed in most of the
 cognitive tasks (temporal consistency), but were not consistent in their
 performance across tasks (context consistency). Neither corticosterone
 levels (baseline and stress-induced) showed a significant relationship
 with either cognitive or personality measures. Neophobic and exploratory
 tendencies determined the willingness of birds to engage only in the seed
 discrimination task. Such tendencies also had a significant effect on
 problem-solving ability. Our results suggest that consistent individual
 differences in cognitive performance along with consistent differences in
 personality could determine response to environmental change and therefore
 have important fitness consequences.
description: Personality_Stress_Cognition_in_Budgerigars_Raw_DataThis file contain all the raw data used in analyses for the associated publication.
DOI: 10.5061/dryad.kk34s
title: Data from: Inbreeding influences within-brood heterozygosity-fitness correlations (HFCs) in an isolated passerine population

description: Molecular estimates of inbreeding may be made using genetic markers such
 as microsatellites, however the interpretation of resulting
 heterozygosity-fitness correlations (HFCs) with respect to inbreeding
 depression is not straightforward. We investigated the relationship
 between pedigree-determined inbreeding coefficients (f) and HFCs in a
 closely monitored, reintroduced population of Stewart Island robins
 (Petroica australis rakiura) on Ulva Island, New Zealand. Using a full
 sibling design, we focused on differences in juvenile survival associated
 specifically with individual sibling variation in standardized multilocus
 heterozygosity (SH) when expected f was identical. We found that within
 broods, siblings with higher SH at microsatellite loci experienced a
 higher probability of juvenile survival. This effect, however, was
 detected primarily within broods that experienced inbreeding or when
 inbreeding had occurred in their pedigree histories (i.e., at the parents’
 level). Thus we show, for the first time in a wild population, that the
 strength of an HFC is partially dependent on the presence of inbreeding
 events in the recent pedigree history. Our results illustrate the
 importance of realized effects of inbreeding on genetic variation and
 fitness and the value of full-sibling designs for the study of HFCs in the
 context of small, inbred populations.
description: Townsend and Jamieson
 data