cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9zheu5
title: Occurrence Download

description: A dataset containing 881 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eurygaster integriceps"
 ]
}

 The dataset includes 881 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017614-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhkhvy
title: Occurrence Download

description: A dataset containing 12697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pulsatilla vulgaris)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 12697 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017615-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gd8cv7
title: Occurrence Download

description: A dataset containing 23397 records in GBIF matching the query:

 SELECT gbifid, datasetkey, specieskey, kingdom, phylum, class, "order", family, genus, species, scientificname, decimallatitude, decimallongitude, eventdate, institutioncode, "year" AS obs_year, basisofrecord, coordinateuncertaintyinmeters, issue
 FROM occurrence
 WHERE
 decimallatitude IS NOT NULL
 AND decimallongitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND coordinateuncertaintyinmeters IS NOT NULL
 AND coordinateuncertaintyinmeters &gt; 0
 AND coordinateuncertaintyinmeters &lt;= 200.0
 AND decimallatitude &gt;= -20.3845909579754
 AND decimallatitude &lt;= -16.25916876999866
 AND decimallongitude &gt;= -41.53841948901044
 AND decimallongitude &lt;= -35.81366587837205
 AND GBIF_Within('POLYGON ((-35.813666 -20.384591, -35.813666 -16.259169, -41.538419 -16.259169, -41.538419 -20.384591, -35.813666 -20.384591))', decimallatitude, decimallongitude) = TRUE
 

 The dataset's 23397 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017611-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6z8fw
title: Occurrence Download

description: A dataset containing 307952 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Castor fiber",
 "Continent is Europe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 307952 records from 578 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017581-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jze3eb
title: Occurrence Download

description: A dataset containing 914 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pyrola chlorantha)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 914 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017617-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17524049
title: Showcase models for Bentopy

description: This is a record of the models used to showcase bentopy. These models demonstrate how bentopy's pack, render, merge, and solvate operations can be used to create very large, complex models.

The models in this record are described in:



Westendorp MSS, Stevens JA, Brown CM, Dommer AC, Wassenaar TA, Bruininks BMH, and Marrink SJ. Compartment-guided assembly of large-scale molecular models with Bentopy. Protein Science. 2026. e70480. https://doi.org/10.1002/pro.70480


This record contains the cell, mitochondrion, and aerosol models as described in the referenced article. For each model, the following files are provided.



Input coordinate files for the individual structures that were packed and the membranes and other large molecules that were used to inform masks.

Input configuration file (input.bent).

Placement list and log produced by bentopy-pack.

Final merged model and topology before solvation (top).


For the aerosol, the virion envelope structure is not present in this record. This model was created at the Amaro lab (Dommer et al., 2023) and will be published in the future.

Instructions on the installation and usage of bentopy can be found in the repository.

 

References

Dommer A, Casalino L, Kearns F, et al. #COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. The International Journal of High Performance Computing Applications. 2022;37(1):28-44. doi:10.1177/10943420221128233
DOI: 10.5281/zenodo.17524048
title: Showcase models for Bentopy

description: This is a record of the models used to showcase bentopy. These models demonstrate how bentopy's pack, render, merge, and solvate operations can be used to create very large, complex models.

The models in this record are described in:



Westendorp MSS, Stevens JA, Brown CM, Dommer AC, Wassenaar TA, Bruininks BMH, and Marrink SJ. Compartment-guided assembly of large-scale molecular models with Bentopy. Protein Science. 2026. e70480. https://doi.org/10.1002/pro.70480


This record contains the cell, mitochondrion, and aerosol models as described in the referenced article. For each model, the following files are provided.



Input coordinate files for the individual structures that were packed and the membranes and other large molecules that were used to inform masks.

Input configuration file (input.bent).

Placement list and log produced by bentopy-pack.

Final merged model and topology before solvation (top).


For the aerosol, the virion envelope structure is not present in this record. This model was created at the Amaro lab (Dommer et al., 2023) and will be published in the future.

Instructions on the installation and usage of bentopy can be found in the repository.

 

References

Dommer A, Casalino L, Kearns F, et al. #COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. The International Journal of High Performance Computing Applications. 2022;37(1):28-44. doi:10.1177/10943420221128233
DOI: 10.15468/dl.wqnxps
title: Occurrence Download

description: A dataset containing 447389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xiphias",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 447389 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017605-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/mhya-se89
title: "Synthetic IBMS Alarm Event Dataset with Ground Truth for Alarm Correlation and Root Cause Analysis"

description: "This dataset provides a synthetically generated Building Management System (BMS) alarm dataset designed for research in alarm correlation, root cause analysis (RCA), and alarm flood detection in smart building environments. The dataset simulates realistic alarm behavior from a large-scale integrated BMS comprising HVAC, power distribution, fire detection and alarm suppression systems (FDASS), CCTV and access control, pumping, and diagnostic subsystems. It contains 179,466 alarm records spanning 180 days, with 15,426 annotated root cause events across 24 distinct fault propagation scenarios and 20 event types. Each alarm is annotated with ground truth labels including root event identification, correlation group membership, propagation delays, and alarm flood flags. The dataset addresses the scarcity of publicly available labeled BMS alarm data for benchmarking alarm correlation and RCA algorithms."
DOI: 10.5281/zenodo.18511603
title: Fuzzy rule base for a COVID-19 surveillance model based on SRAG cases

description: This repository contains the complete fuzzy rule base used in a specialist system developed to support COVID-19 epidemiological surveillance. The rules are provided in textual format, including all input variables, linguistic terms, and output classifications. The interpretation of the rules requires the definitions described in the associated manuscript.
DOI: 10.5281/zenodo.18511604
title: Fuzzy rule base for a COVID-19 surveillance model based on SRAG cases

description: This repository contains the complete fuzzy rule base used in a specialist system developed to support COVID-19 epidemiological surveillance. The rules are provided in textual format, including all input variables, linguistic terms, and output classifications. The interpretation of the rules requires the definitions described in the associated manuscript.
DOI: 10.15468/dl.4e2m62
title: Occurrence Download

description: A dataset containing 3161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pyrola minor, Pyrola minor, Pyrola minor, Pyrola minor)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 3161 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017620-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.twgw34
title: Occurrence Download

description: A dataset containing 1240935 species occurrences available in GBIF matching the query:
{
 "and" : [
 "KingdomKey is Plantae",
 "Country is Ecuador",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Human Observation, Machine Observation)"
 ]
}

 The dataset includes 1240935 records from 313 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017606-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xwtdw6
title: Occurrence Download

description: A dataset containing 13628 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ranunculus aconitifolius, Ranunculus platanifolius)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 13628 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017623-260129131611470/datasets/export for details.
DOI: 10.5281/zenodo.18511531
title: Iranian Classical Music Dataset - Chahargah

description: This dataset contains 869 audio recordingsof Iranian classical music

in the Dastgāh-e Chāhārgāh, solo performed on seven traditional

Iranian instruments: Tār, Setār, Santūr, Ney, Kamānche, Qānūn, and ʿŪd.


The dataset was created as part of an ongoing research project investigating

"computational creativity and cultural identity in non-Western musical

frameworks" with a particular focus on Iranian classical music.

Zenodo DOI: 10.5281/zenodo.18511531
DOI: 10.5281/zenodo.18511530
title: Iranian Classical Music Dataset - Chahargah

description: This dataset contains 869 audio recordingsof Iranian classical music

in the Dastgāh-e Chāhārgāh, solo performed on seven traditional

Iranian instruments: Tār, Setār, Santūr, Ney, Kamānche, Qānūn, and ʿŪd.


The dataset was created as part of an ongoing research project investigating

"computational creativity and cultural identity in non-Western musical

frameworks" with a particular focus on Iranian classical music.

Zenodo DOI: 10.5281/zenodo.18511531
DOI: 10.7910/dvn/n8ofwm
title: 06_8_page_book_T_cut_template_from_1_sheet

description: 06_8_page_book_T_cut_template_from_1_sheet
DOI: 10.15468/dl.zd8fcq
title: Occurrence Download

description: A dataset containing 4815 records in GBIF matching the query:

 SELECT gbifid, datasetkey, specieskey, kingdom, phylum, class, "order", family, genus, species, scientificname, decimallatitude, decimallongitude, eventdate, institutioncode, "year" AS obs_year, basisofrecord, coordinateuncertaintyinmeters, issue
 FROM occurrence
 WHERE
 decimallatitude IS NOT NULL
 AND decimallongitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND coordinateuncertaintyinmeters IS NOT NULL
 AND coordinateuncertaintyinmeters &gt; 0
 AND coordinateuncertaintyinmeters &lt;= 200.0
 AND decimallatitude &gt;= -20.3845909579754
 AND decimallatitude &lt;= -16.25916876999866
 AND decimallongitude &gt;= 10.232475965249156
 AND decimallongitude &lt;= 15.576907308378914
 AND GBIF_Within('POLYGON ((15.576907 -20.384591, 15.576907 -16.259169, 10.232476 -16.259169, 10.232476 -20.384591, 15.576907 -20.384591))', decimallatitude, decimallongitude) = TRUE
 

 The dataset's 4815 records were derived from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017619-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uzd63b
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Specimen, Fossil, Living Specimen, Occurrence evidence, Human Observation)",
 "Country is Canada",
 "Geometry POLYGON((-122.64891 49.18372,-122.56264 49.17342,-122.5453 49.25972,-122.53683 49.2834,-122.52223 49.32098,-122.56916 49.35862,-122.60802 49.36621,-122.62619 49.37717,-122.65463 49.35108,-122.76648 49.27369,-122.79148 49.2246,-122.75159 49.19477,-122.72207 49.17996,-122.64891 49.18372))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sium suave"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017627-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/pumkxm
title: Replication Data for: Cancer genomics, targeted therapy to precision oncology: the treatment paradigm is a holistic approach to cancer therapeutics

description: Cancer is a fatal genetic disease involving unregulated cell growth and proliferation with varying underlying complexities that requires carefully optimized treatment for a full cure. Cellular behaviors such as growth, proliferation, survival, or death rely upon the ability of cells to communicate with the surrounding system; therefore, effective targeting of dysregulated signaling pathways involving growth factors, regulatory proteins, cell adhesion molecules, and immune system molecules is critical to cancer therapy. They are mainly driven by alterations in tumor suppressor genes and oncogenes that may vary among different cancer types. Importantly, patients with the same cancer type respond differently to available cancer treatments, likely due to tumor-specific DNA, RNA, and proteins, indicating the need for patient-specific treatment options. Precision oncology has evolved as a form of cancer therapy focused on genetic and molecular profiling of tumors to identify specific molecular alterations involved in carcinogenesis for tailored individualized cancer treatment. This article aims to briefly explain the foundations and frontiers of precision oncology, highlighting the cutting-edge innovations in tools and techniques associated with it to assess its scope and importance in achieving efficacious cancer treatment over time.
DOI: 10.5281/zenodo.15134652
title: TABLE 1 in Turcinoemacheilus inexpectatus, a new nemacheilid loach from the Tigris drainage (Teleostei: Nemacheilidae)

description: TABLE 1. Morphometric data of Turcinoemacheilus inexpectatus (holotype ZFMK ICH 98400 and paratypes ZFMKICH 98401-98406, FSJF 3661, FSJF 3345, FSJF 3653, FSJF 3958; n=20).
HolotypeHolotype & paratypesmeanminmaxSDStandard length (mm)49.444.939.752.13.4In percent of standard lengthHead length17.918.917.420.70.9Body depth at dorsal-fin origin11.512.19.614.31.2Body width at dorsal-fin origin8.79.68.510.90.8Predorsal length53.755.653.758.41.1Postdorsal length38.336.332.939.51.6Preanal length75.376.572.879.41.9Prepelvic length49.951.149.753.31.0Distance between pectoral- and pelvic-fin origins32.633.031.135.01.1Distance between pelvic- and anal-fin origins24.324.922.426.81.1Distance between vent and anal-fin origin13.912.710.114.81.1Depth of caudal peduncle8.19.08.010.20.7Length of caudal peduncle19.318.216.4120.01.1Dorsal-fin depth13.014.010.216.21.3Anal-fin height13.413.210.515.21.3Pectoral-fin length14.615.312.719.01.2Pelvic-fin length12.312.710.815.51.0In percent of head lengthHead depth at eye4140.337472.5Snout length4243.139502.4Eye diameter1415.413181.4Postorbital distance4948.343532.7Maximum head width6158.353633.3Interorbital width3133.531372.0
description: Published as part of Freyhof, Jörg & Jouladeh-Roudbar, Arash, 2024, Turcinoemacheilus inexpectatus, a new nemacheilid loach from the Tigris drainage (Teleostei: Nemacheilidae), pp. 178 in Zootaxa 5399 (2) on page 178, DOI: 10.11646/zootaxa.5399.2.6, http://zenodo.org/record/10494374
DOI: 10.5281/zenodo.15134653
title: TABLE 1 in Turcinoemacheilus inexpectatus, a new nemacheilid loach from the Tigris drainage (Teleostei: Nemacheilidae)

description: TABLE 1. Morphometric data of Turcinoemacheilus inexpectatus (holotype ZFMK ICH 98400 and paratypes ZFMKICH 98401-98406, FSJF 3661, FSJF 3345, FSJF 3653, FSJF 3958; n=20).
HolotypeHolotype & paratypesmeanminmaxSDStandard length (mm)49.444.939.752.13.4In percent of standard lengthHead length17.918.917.420.70.9Body depth at dorsal-fin origin11.512.19.614.31.2Body width at dorsal-fin origin8.79.68.510.90.8Predorsal length53.755.653.758.41.1Postdorsal length38.336.332.939.51.6Preanal length75.376.572.879.41.9Prepelvic length49.951.149.753.31.0Distance between pectoral- and pelvic-fin origins32.633.031.135.01.1Distance between pelvic- and anal-fin origins24.324.922.426.81.1Distance between vent and anal-fin origin13.912.710.114.81.1Depth of caudal peduncle8.19.08.010.20.7Length of caudal peduncle19.318.216.4120.01.1Dorsal-fin depth13.014.010.216.21.3Anal-fin height13.413.210.515.21.3Pectoral-fin length14.615.312.719.01.2Pelvic-fin length12.312.710.815.51.0In percent of head lengthHead depth at eye4140.337472.5Snout length4243.139502.4Eye diameter1415.413181.4Postorbital distance4948.343532.7Maximum head width6158.353633.3Interorbital width3133.531372.0
description: Published as part of Freyhof, Jörg & Jouladeh-Roudbar, Arash, 2024, Turcinoemacheilus inexpectatus, a new nemacheilid loach from the Tigris drainage (Teleostei: Nemacheilidae), pp. 178 in Zootaxa 5399 (2) on page 178, DOI: 10.11646/zootaxa.5399.2.6, http://zenodo.org/record/10494374
DOI: 10.15468/dl.fcc6ea
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Living Specimen, Specimen, Human Observation, Observation)",
 "Geometry POLYGON((-122.71814 49.43799,-122.82802 49.19141,-122.58713 49.14444,-122.47091 49.30039,-122.4688 49.4105,-122.71814 49.43799))",
 "HasGeospatialIssue is false",
 "TaxonKey is Myriophyllum spicatum"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017629-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/ow7bxe
title: 08_4_page_book_template_from_1_sheet

description: 08_4_page_book_template_from_1_sheet
DOI: 10.7910/dvn/itbupx
title: 03_8_page_book_2_panel_center_slice_template_from_1_sheet

description: 03_8_page_book_2_panel_center_slice_template_from_1_sheet
DOI: 10.7910/dvn/gzv7jo
title: 07_16_page_snake_book_template_from_1_sheet

description: 07_16_page_snake_book_template_from_1_sheet
DOI: 10.5281/zenodo.18500336
title: North Korean Economic Discourse Analysis: LDA and BERTopic Results (2011-2020)

description: Aggregated statistical results from topic modeling analysis of North Korea's Journal of Economic Research (경제연구), 2011-2020.

This dataset contains:- LDA topic modeling results (K=8): yearly topic distributions, topic keywords, coherence scores- BERTopic results (7 topics): yearly topic distributions, topic keywords

Data source: 1,503 articles (46,334 sentences) from North Korea's Journal of Economic Research.

Note: The original sentence-level corpus cannot be shared due to copyright restrictions (North Korea's Science and Encyclopedia Publishing House). Only aggregated statistical outputs are provided.

Related publication: Kang, K. (2025). AI-Based Discourse Analysis for Predicting Policy Shifts in Closed Regimes: A Methodological Triangulation of LDA and BERTopic Applied to North Korea. F1000Research. [DOI to be added]
DOI: 10.7910/dvn/zs5xyv
title: 05_3_page_book_hexagonal_flex_template_from_01_sheet

description: 05_3_page_book_hexagonal_flex_template_from_01_sheet
DOI: 10.15468/dl.rg5kw5
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Occurrence evidence)",
 "Geometry POLYGON((-122.70221 49.17548,-122.52953 49.18872,-122.50958 49.28213,-122.52953 49.34951,-122.61037 49.38004,-122.68925 49.34951,-122.78338 49.2803,-122.78135 49.21708,-122.70221 49.17548))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sium suave"
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017630-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.