cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/237d51507c585c12b0ed336935d0adc9
title: Lake Sediment Pollen from Wildwood Lake in Long Island NY from 4500 BP to Present

description: Analyses of pollen, charcoal, and organic content in a lake-sediment core from Wildwood Lake, Long Island, New York, provide insights into the ecological and environmental history of this region. The early-Holocene interval of the record (~9800-8800 cal. a BP) indicates the presence of Pinus rigida-Quercus ilicifolia woodlands with high fire activity. A layer of sandy sediment dating to 9200 cal. a BP may reflect a brief period of reduced water depth, consistent with widespread evidence for cold, dry conditions at that time. Two other sandy layers, bracketed by 14C dates, represent a sedimentary hiatus from ~8800 to 4500 cal. a BP. This discontinuity may reflect the removal of some sediment during brief periods of reduced water depth at 5300 and 4600 cal. a BP. In the upper portion of the record (before 4500 cal. a BP), subtle changes at ~3000 cal. a BP indicate declining prevalence of Quercus-Fagus-Carya forests and increasing abundance of Pinus rigida, perhaps due to reduced summer precipitation. Elevated percentages of herbaceous taxa in the uppermost sediments represent European agricultural activities. However, unlike charcoal records from southern New England, fire activity does not increase dramatically with European settlement. These findings indicate that present-day Pinus rigida-Quercus ilicifolia woodlands on eastern Long Island are not a legacy of recent, anthropogenic disturbances.
DOI: 10.5281/zenodo.10285094
title: Mixture of three fluorophores

description: This data was used in the following publication:
Anne Bech Risum, Jesper Løve Hinrich and Åsmund Rinnan (2024): Multi-way decomposition followed by reconvolution of fluorescence time decay data, Analytical Chemistry. DOI: 10.1021/acs.analchem.3c00634
The data is in Matlab format, and a description of the content can be found in the ReadMe.txt file
DOI: 10.5281/zenodo.10285095
title: Mixture of three fluorophores

description: This data was used in the following publication:
Anne Bech Risum, Jesper Løve Hinrich and Åsmund Rinnan (2024): Multi-way decomposition followed by reconvolution of fluorescence time decay data, Analytical Chemistry. DOI: 10.1021/acs.analchem.3c00634
The data is in Matlab format, and a description of the content can be found in the ReadMe.txt file
DOI: 10.26093/cds/aladin/b0qm-9w
title: ATLASGAL APEX-Planck 850um HiPS

description: ATLASGAL is the APEX Telescope Large Area Survey of the Galaxy, an observing programme with the LABOCA bolometer array at APEX, located at 5100 m altitude on Chajnantor, Chile. This survey mapped over 400 square degrees at 870 microns in the inner Galaxy, with a uniform sensitivity of a few solar masses at 1 kpc distance. This project is a collaboration between the Max Planck Gesellschaft (MPG: Max Planck Institute fur Radioastronomie, MPIfR Bonn, and Max Planck Institute fur Astronomie, MPIA Heidelberg), the European Southern Observatory (ESO) and the Universidad de Chile. The APEX telescope is ideally located to observe the inner Milky Way. The Large APEX Bolometer Camera (LABOCA) is a 295-element bolometer array observing at 870 um, with a beam size of 19.2 arcsec. Taking advantage of its large field of view (11.4 arcmin) and excellent sensitivity, we started an unbiased survey of the entire Galactic Plane accessible to APEX, with a typical noise level of 50-70 mJy/beam: the APEX Telescope Large Area Survey of the Galaxy (ATLASGAL). The LABOCA data have been combined with the results of the Planck satellite. The method used to combine the Planck and ATLASGAL data together is described in Csengeri et al. (2016).
DOI: 10.5517/ccdc.csd.cc2bj4bc
title: CCDC 2160462: Experimental Crystal Structure Determination

description: Related Article: Gujju Narsimhulu, Calvin Samuel, Sathishkumar Palani, Sai Hemant Kumar Dasari, Kothandam Krishnamoorthy, Viswanathan Baskar|2023|Dalton Trans.|52|17242|doi:10.1039/D3DT02746E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj4cd
title: CCDC 2160463: Experimental Crystal Structure Determination

description: Related Article: Gujju Narsimhulu, Calvin Samuel, Sathishkumar Palani, Sai Hemant Kumar Dasari, Kothandam Krishnamoorthy, Viswanathan Baskar|2023|Dalton Trans.|52|17242|doi:10.1039/D3DT02746E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj4df
title: CCDC 2160464: Experimental Crystal Structure Determination

description: Related Article: Gujju Narsimhulu, Calvin Samuel, Sathishkumar Palani, Sai Hemant Kumar Dasari, Kothandam Krishnamoorthy, Viswanathan Baskar|2023|Dalton Trans.|52|17242|doi:10.1039/D3DT02746E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj4fg
title: CCDC 2160465: Experimental Crystal Structure Determination

description: Related Article: Gujju Narsimhulu, Calvin Samuel, Sathishkumar Palani, Sai Hemant Kumar Dasari, Kothandam Krishnamoorthy, Viswanathan Baskar|2023|Dalton Trans.|52|17242|doi:10.1039/D3DT02746E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24764361
title: 20231208_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.24764361.v1
title: 20231208_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6073/pasta/710e95e0bdcca54708f40a42c49c7ec0
title: Regional Distribution and Abundance of Eastern Hemlock in Eastern North America 2010

description: We developed comprehensive maps on the distribution and abundance of hemlock for the purposes of mapping the host distribution, and modeling the spread, of the hemlock woolly adelgid. Multiple statistical models were used to map the distribution of hemlock. Hemlock occurrence data were taken from the FIA database and multiple environmental predictors were gathered from various databases as described in methods. The raster map depicts the predicted abundance of hemlock m2 basal area per hectare) across its range in eastern North America.
DOI: 10.6073/pasta/65b652ec78786936f8f9d0961cbb107c
title: Annual Maps of Mean Winter Temperature for Eastern North America 1951-2009

description: We developed annual raster maps depicting spatiotemporal variation in mean winter temperature for the purposes of modeling the spread of the hemlock woolly adelgid. The maps are based on the PRISM and WorldClim datasets as described in methods.
DOI: 10.5285/880e8ca1-874b-42be-8768-af128627d789
title: Satellite tracked GPS locations of two southern right whales tagged in South Georgia waters from January to September 2020

description: This dataset summarises the raw GPS locations obtained by satellite tracking of two southern right whales tagged at South Georgia island on 28th January 2020. One whale, genetically identified as a female, was tracked for 117 days (4,860 tag locations provided) and travelled ~5818km including a short period of time at the ice edge. The second whale, genetically identified as a male, was tracked for 238 days (8,492 tag locations provided) and travelled ~9,885km, including migration through the national waters of Argentina, Uruguay and Brazil.

Funding: 
EU BEST 2.0 Medium Grant 1594, DARWIN PLUS award DPLUS057 and funding from the South Georgia Heritage Trust and Friends of South Georgia Island.
description: Location-only (SPOT6, Wildlife Computers, Redmond, WA USA) Argos satellite tags were deployed on southern right whales in South Georgia waters in January 2020. These tags are defined as ''Type C'' (or consolidated) implantable tags by the International Whaling Commission (IWC). Tag deployment was conducted from the bow of a rigid-hulled inflatable boat using a custom-modified pneumatic line-throwing device at a distance of approximately 3-10 m from the whale. Each tagged animal was judged to be an adult or subadult based on the overall size and behaviour of the whale. Biopsy samples and photographs were collected simultaneously to tag deployment. Tagging and biopsy operations were conducted in accordance with best practice guidelines (see reference). Biopsy samples were subsequently used to identify the sex of each animal.
description: Location-only (SPOT6, Wildlife Computers, Redmond, WA USA) Argos satellite tags.
description: The data are provided here as raw Argos locations with no quality control performed. Some rows are missing information because sometimes not all information is sent to the satellite, and it may take several messages to convey all of the information. Some columns are empty because the Argos output columns are standard for all tag types, and data outputs vary depending on the sensors associated with the tag in question.
DOI: 10.6084/m9.figshare.24764187
title: Dataset: Development of terminal air spaces in the gray short-tailed opossum <i>(Monodelphis domestica)</i> - data files

description: The Gray Short-tailed opossum (<i>Monodelphis domestica)</i> is a pouchless marsupial from Brazil. The newborn <i>Monodelphis domestica</i> represents the morphotype of the marsupial and mammalian neonate and is suitable to inform on the evolution of the mammalian lung. X-ray computed tomography (Micro-CT) has been applied to three-dimensionally reconstruct the terminal airspaces of <i>Monodelphis domestica</i> in order to reveal the timeline of lung morphogenesis. In addition, lung and air space volume as well as surface area were determined to assess the functional relevance of the structural changes in the developing lung. Morphometric measurements on air space size and septum thickness were carried out to evaluate structural remodelling.The development of the terminal air spaces was examined in 35 animals from embryonic day 13, during the postnatal period (neonate to 57 days) and in adults. At birth, the lung of <i>Monodelphis</i> <i>domestica</i><i> </i>is<i> </i>at the canalicular stage of lung development and has a few large terminal air spaces, which are poorly subdivided and open directly from short lobar bronchioles. During the postnatal period the lung went through the saccular period, characterized by a continued subdivision of the air spaces. The alveolar period, characterized by respiratory bronchioli, alveloar ducts and alveolar sacs, was fully attained by 35 dpn. The structural transformation from large terminal sacs to the final alveolar lung in the gray short-tailed opossum follows similar patterns as described in other marsupial and placental mammals. The processes involved in sacculation and alveolarization during lung development seem to be highly conservative within mammalian evolution. This data publication publishes the original data and calculations for the publication "Development of the terminal air spaces in the gray short-tailed opossum (<i>Monodelphis domestica</i>) – 3D reconstruction by microcomputed tomography" (PlosOne).
DOI: 10.20383/102.0549
title: Estimating the likelihood of GHG concentration scenarios from probabilistic IAM simulations

description: Dataset holding analysis-ready data, results and scripts for the paper "Estimating the likelihood of GHG concentration scenarios from probabilistic IAM simulations". Includes compatible CO2 emissions diagnosed from CMIP5 and CMIP6 carbon fluxes, probabilistic CO2 emissions from IAM simulations, observed historical carbon dioxide (CO2) emissions, CMIP5 and CMIP6 scenario emissions (RCPs, SSPs), and the estimated scenario (RCPs, SSPs) likelihoods for each IAM simulation. All datasets are stored in netCDF format and strive to comply with the CF convention. Also includes the graphics and tables from the paper, as well as the Python code to generate them from the data above. Details on the directory content can be found in READMEs for each directory, and file-specific information found in the global attributes of each netCDF file.
DOI: 10.6073/pasta/c0ee975719d1ca9d2235231371ded741
title: Food Web of Sarracenia Purpurea in United States and Canada 1999-2011

description: How food webs are structured and how their structure and dynamics vary through time and space is a central focus of research in community ecology. We documented structural variation in the aquatic food web inhabiting pitcher-shaped leaves of the carnivorous pitcher plant Sarracenia purpurea across the geographic range of the plant (from Florida north to Labrador and west to British Columbia); examined temporal variation in this food web with detailed experiments in Massachusetts and Vermont; experimentally manipulated top-down and bottom-up processes in this food web in Massachusetts; and developed a dynamic simulation model of this food web that incorporates metacommunity dynamics.
DOI: 10.6084/m9.figshare.24018321
title: Nelson et al LogiMML microscopy images

description: Microscopy images from the manuscript:Logic-based mechanistic machine learning on high-content images reveals how drugs differentially regulate cardiac fibroblasts | bioRxiv
DOI: 10.17043/ray-2023-sediment-silicon-1
title: Coastal Yedoma deposits and continental shelf sediments in the Arctic Ocean silicon cycle collected in 2020
DOI: 10.5281/zenodo.10285071
title: Measuring the conditional luminosity and stellar mass functions of galaxies by combining the DESI LS DR9, SV3 and Y1 data
DOI: 10.5281/zenodo.10285072
title: Measuring the conditional luminosity and stellar mass functions of galaxies by combining the DESI LS DR9, SV3 and Y1 data
DOI: 10.5281/zenodo.10276578
title: Properties of identified ship tracks

description: The ship track database of is used, which used "day microphysics" images comprised of a composite of visible, near and thermal infrared channels were used to manually locate likely positions of ship tracks. Identification was assisted by examining the CDNC, calculated from the MYD06 level 2 cloud retrieval products from Moderate Resolution Imaging Spectroradiometer (MODIS) onboard the Aqua satellite. The CDNC is calculated based on the adiabatic assumption, using the cloud optical depth and cloud effective radius from the MODIS MYD06 level 2 product.
Ship locations were sourced from their automatic identification system (AIS) data, allowing an observed ship track to be linked to the generating ship. Local meteorology was gathered from the European Centre for Medium-Range Weather Forecasts ERA5 reanalysis data, and ships mass emission rates were calculated using their specific fuel consumption and estimated drag. 
Data labels:

trackno: Ship track identifier (-)
sox: SO emission rate (kg s^-1)
cbh: Cloud base height (m)
blh: Boundary layer height (m)
cth: Cloud top height (m)
spd_res: Relative velocity between ship velocity and wind velocity (m s^-1)
nd_cln: Background cloud droplet number concentration (cm^-3)
nd_pol: Ship track cloud droplet number concentration (cm^-3)
cf_liq: Liquid cloud fraction (-)
lwp: Liquid water path (g m^-2)
t1000: Temperature at 1000 hPa (K)
LTS: Low tropospheric stability (K)
ctt: Cloud top temperature (K)
ctrc: Cloud top radiative cooling (W m^-2)
is_coupled: Flag for cloud coupling according to cloud base height indicator (cbh<1000 m)
DOI: 10.26093/cds/aladin/2cgj-vmf
title: CFHTLS-D-color-ugi HiPS

description: The Canada-France-Hawaii Telescope Legacy Survey is a 5-year program carried out jointly by the Canadian and French agencies. It will use the Megaprime/Megacam instrument mounted at prime focus of the 3.6m CFH telescope during the period 2003-2008. The Deep survey concerns 4 patchsof 1 square-degree. All will be observed in u,g,r,i and z, with very long exposure time
DOI: 10.5281/zenodo.7838044
title: Data accompanying the paper "Resonance Raman microscopy of nickel-based electron transport in cable bacteria"

description: Data accompanying the paper "Resonance Raman microscopy of nickel-based electron transport in cable bacteria"
DOI: 10.6073/pasta/472b67286f2ab2040705e4322d1ff800
title: 20-Year Synthesis of Soil Respiration Data at Harvard Forest 1991-2008

description: All data on soil carbon flux (“soil respiration”) collected using chamber-based methods at Harvard Forest from a range of observational and experimental plots were collated, their units were harmonized, and geographic (locations) and environmental characteristics (soil series, drainage class, soil temperature, soil moisture, vegetation type, etc.) were identified for each observation. This yielded a dataset with 106,192 observations of soil respiration taken between 1991 and 2008. These data provide a unique resource for exploring spatial and temporal patterns in soil respiration in a range of common New England forest types. 
 
 
 For the Giasson, et al. (2013) publication, we also used 24 site-years of eddy covariance measurements from two Harvard Forest sites (EMS and Hemlock towers) to examine the relationship between soil and ecosystem respiration. Here, we present all derived/synthetic datasets associated with the manuscript.
 M.-A. Giasson, A. M. Ellison, R. D. Bowden, P. M. Crill, E. A. Davidson, J. E. Drake, S. D. Frey, J. L. Hadley, M. Lavine, J. M. Melillo, J. W. Munger, K. J. Nadelhoffer, L. Nicoll, S. V. Ollinger, K. E. Savage, P. A. Steudler, J. Tang, R. K. Varner, S. C. Wofsy, D. R. Foster, and A. C. Finzi 2013. Soil respiration in a northeastern US temperate forest: a 22-year synthesis. Ecosphere 4:art140. http://dx.doi.org/10.1890/ES13.00183.1
DOI: 10.15454/h8vjcm/ynmy7y
title: MARVIN.tab

description: maturity data, 1969-2020, southern Rhone valley
DOI: 10.15454/h8vjcm/3o4f79
title: graph_phéno.png

description: :unav
DOI: 10.15454/h8vjcm/wuz8ua
title: Number of plots.tab

description: :unav
DOI: 10.15454/h8vjcm/6ygx63
title: DOY of samplings.tab

description: :unav
DOI: 10.15454/h8vjcm/zxvpsa
title: Location of plots.tab

description: :unav
DOI: 10.15454/h8vjcm/1vtavu
title: grenache_ic_recolte.RData

description: harvest data for grenache joined with climatic indicators from SAFRAN database
DOI: 10.15454/h8vjcm/7edzes
title: grenache_proche1sep_ic.RData

description: September 1st data for grenache joined with climatic indicators from SAFRAN database
DOI: 10.15454/h8vjcm/da9w9o
title: comparaison_modeles.csv

description: phenological process based models comparisons for southern rhone valley
DOI: 10.57745/lzpy2i
title: marvin-2022.txt

description: maturity data, 1969-2022, southern Rhone valley, Grenache
DOI: 10.57745/xostj5
title: marvin-2023.txt

description: :unav
DOI: 10.6073/pasta/c11fcefa4e07535d96060ca5ad9c9bdb
title: History and Dynamics of American Beech in Coastal New England 1620-2006

description: Variation in forest response to hurricane disturbance in coastal New England
 Research on disturbance in forest ecosystems has generally focused on either catastrophic disturbances generating stand-replacing successional sequences, or small-scale disturbances (e.g. individual tree-fall gaps) resulting in tree-by-tree replacement. The role of moderate disturbances in forest development, in contrast, is poorly understood. While the most severe hurricanes can cause catastrophic disturbance, the vast majority of hurricanes that affect forests from the Caribbean to the northeastern United States are moderate in intensity. In this study we examine both individual and population level responses of beech (Fagus grandifolia) and oak species (Quercus spp.) to hurricanes of varying intensity in coastal Massachusetts. We characterize growth response to disturbance using a novel approach that explicitly compares the range of growth responses observed following known disturbances to the range of growth responses in non-event years. The tree species exhibited a wide range of growth and regeneration responses to hurricanes; however, only a single storm caused dramatic increases in growth and new establishment for beech. The results of this study highlight the importance of wind disturbance in the establishment and persistence of beech, and suggest that while some moderate disturbances have little or no effect on species growth and regeneration dynamics, individual storms may have substantial impacts. Forest response to wind storms of varying, but moderate intensities, depended on local site conditions, including environmental, meteorological, topographical, historical and biological factors.
 
 
 Beech dominance in a coastal New England forest
 Monodominant forests occur in a wide range of tropical and temperate ecosystems, but the mechanisms enabling their development are not well understood. This study examines the history and dynamics of beech-dominated forests in coastal New England in order to identify factors that facilitate beech dominance. We also characterize beech structural variation with respect to edaphic and environmental conditions, and describe ‘dwarf beech forests’ which have not been documented in the literature. The development of beech dominance in the study area, Naushon Island, Massachusetts, was influenced by numerous factors - selective oak harvesting in the early historical period, infrequent fire, frequent and occasionally intense hurricanes, intense deer herbivory, minimal anthropogenic disturbance over the past 150 years, and geographic isolation – and facilitated by beech’s ability to persist in the understory and reproduce vegetatively. This study highlights the importance of both disturbance history and species-specific traits in the development of monodominant forests, and suggests that these stands can persist for long periods of time in the absence of pest, pathogen, or other disturbances.
DOI: 10.5281/zenodo.10285825
title: S1000 corpus, large-scale tagging results and other supplementary files

description: Data associated with the S1000 corpus
The tagger software for which the dictionary files in tagger-organisms-dictionary-S1000.tar.gz can be used with can be found here: https://github.com/larsjuhljensen/tagger
The online version of the annotation documentation can be found here: https://katnastou.github.io/s1000-corpus-annotation-guidelines/
The S1000 corpus split in training, development and test sets in BRAT format can be found in S1000-corpus.tar.gz and in CoNLL format here: s1000-conll.tar.gz
The tagging results of Jensenlab tagger for the S1000 test set are here: S1000-jensenlab-tagger.tar.gz
The result from the large scale run in entire PubMed and PMC Open Access articles for Jensenlab tagger is provided here: Jensenlab_tagger_large_scale_matches_with_rank.tsv.gz
The model used for the large scale run of the transformer-based method is here: S1000_Transformer_based_tagger_large_scale_model.tar.gz and the results from the large scale tagging here: Transformer_based_tagger_large_scale_matches_with_rank.tsv.zip