cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bdwcgmvttk.1
title: Research Article-Electrochemical Investigation into the interaction of Fe(II) and Fe(III) with Tau Protein-Potential Implications for Alzheimer’s Disease

description: Tau, a family of microtubule-associated protein that exists in six isoforms, is involved in the etiology of Alzheimer’s and upon hypophosphorylation gives rise to neurofibrillary tangles inside neurons. Here, we report the results of an electrochemical investigation into the interaction of Fe(II) and Fe(III) with surface-supported tau (Tau-410, 2N3R). Changes in current density and impedance changes were used to monitor metal-tau interactions and tau-tau interactions. Our detailed electrochemical studies of surface-supported tau protein are supported by X-ray photoelectron spectroscopy and by measurement of interactions in solution by circular dichroism spectroscopy. Also, we include the effects of tau phosphorylation on the interactions with Fe(II) and Fe(III). Our results demonstrate that a) Fe(II) and Fe(III) bind to the tau protein, b) structural changes occur to tau upon metal binding, c) Fe(II) shows a more pronounced effect, d) phosphorylation affects the metal ion complexation and e) tau-tau interactions are mediated by Fe(II). References: (1) Ahmadi, S.; Zhu, S.; Sharma, R.; Wu, B.; Soong, R.; Majumdar, R. D.; Wilson, D. J.; Simpson, A. J.; Kraatz, H.-B. Aggregation of Microtubule Binding Repeats of Tau Protein Is Promoted by Cu2+. ACS Omega 2019, 4 (3), 5356–5366. https://doi.org/10.1021/acsomega.8b03595. (2) Ahmadi, S.; Wu, B.; Song, R.; Zhu, S.; Simpson, A.; Wilson, D. J.; Kraatz, H. B. Exploring the Interactions of Iron and Zinc with the Microtubule Binding Repeats R1 and R4. J. Inorg. Biochem. 2020, 205, 110987. https://doi.org/10.1016/j.jinorgbio.2019.110987. (3) Ahmadi, S.; Zhu, S.; Sharma, R.; Wilson, D. J.; Kraatz, H.-B. Interaction of Metal Ions with Tau Protein. The Case for a Metal-Mediated Tau Aggregation. J. Inorg. Biochem. 2019, 194, 44–51.
DOI: 10.17632/d9m32d38kh.1
title: Exploring perspectives and experiences of dermatologists on challenges in treatment options for cutaneous leishmaniasis in Iraqi Kurdistan Region

description: This study aimed to understand the range and diversities of opinions and the practical experiences of dermatologists about the treatment of cutaneous leishmaniasis. This explorative study based on Q-methodology was conducted in Erbil, Iraqi Kurdistan Region. The study involved a sample of 37 dermatologists. Forty statements were extracted that have covered various aspects of difficulties and uncertainties of treating cutaneous leishmaniasis. We asked the participants to rank-order the 40 statements into a distribution, ranging from “least agree” to “most agree." Data analysis involves by-person factor analysis using PQMethod 2.35.
DOI: 10.17632/hj22ymt7xj.1
title: Dataset of in situ Soil Moisture and Temperature in Genhe watershed (2016-2018) and Saihanba (2018-2019) area over China

description: The data presented in this article are related to our work on “Evaluation and Analysis of SMAP, AMSR2 and MEaSUREs Freeze/Thaw Products in China”. Soil temperature and moisture are two of important parameters of land-atmosphere energy exchange, monitoring vegetation growth, predicting drought disasters and climate and hydrological modelling. In this study, soil temperature and moisture data over Genhe watershed and Saihanba area were introduced. There are 22 sites data presented here from the continuous automatic soil temperature and moisture observation network in Genhe watershed as a representative of the complex surface heterogeneity in northeast China from March 2016 to February 2018. Another continuous automatic soil temperature and moisture measurement network included 29 sites in Saihanba area with unique alpine wetland and a complete aquatic ecosystem in the North China since August 2018. Soil temperature and permittivity data were measured by ECH2O EC-5TM probes (Decagon Devices, Inc., Washington, USA) and XST probes (BJ XST Co., Ltd., www.xingshitu.com) every 30 minutes at depths of 3 cm, 5 cm and 10 cm for Genhe watershed and depths of 5 cm and 10 cm for Saihanba area. The soil temperature and moisture were collected by EM50 data collection system by automatically converted permittivity to soil moisture over Genhe watershed, and soil temperature and permittivity were collected by XST data collection system over Saihanba area. The permittivity collected by XST data collector were transformed to soil moisture (volumetric water content, VWC). The data of Genhe watershed and Saihanba area consist of raw data acquired by data collector and valid data of soil temperature and moisture. Dataset for Saihanba area also included the calibration data based on soil texture. The long-term soil temperature and moisture data can provide important ground reference data for the validation and algorithm improvement of soil moisture and soil freeze/thaw by microwave remote sensing in China.
DOI: 10.17632/zx3kjzc3yx.2
title: A model of antigen processing improves prediction of MHC I-presented peptides

description: Computational prediction of the peptides presented on MHC class I proteins is an important tool for studying T cell immunity. The data available to develop such predictors has expanded with the use of mass spec to identify naturally-presented MHC ligands. In addition to elucidating binding motifs, the identified ligands also reflect the antigen processing steps that occur prior to MHC binding. Here, we developed an integrated predictor of MHC I presentation that combines new models for MHC I binding and antigen processing. Considering only peptides first predicted by the binding model to bind strongly to MHC, the antigen processing model is trained to discriminate published mass spec-identified MHC I ligands from unobserved peptides. The integrated model outperformed the two individual components as well as NetMHCpan 4.0 and MixMHCpred 2.0.2 on held-out mass spec experiments. Our predictors are implemented in the MHCflurry package, version 1.6.0 (github.com/openvax/mhcflurry). See preprint at: https://doi.org/10.1101/2020.03.28.013714 Additional File 1. MULTIALLELIC benchmark dataset with predictions (CSV). Additional File 2. MONOALLELIC benchmark dataset with predictions (CSV). Additional File 3. Training data for MHCflurry 1.6.0 binding affinity (BA) predictors (CSV). Additional File 4. Training data for the variant of MHCflurry BA evaluated on the MONOALLELIC benchmark in Fig. S1 (CSV). Additional File 5. Training data for MHCflurry 1.6.0 antigen processing (AP) predictors (CSV). Additional File 6. Training data for MHCflurry 1.6.0 presentation score (PS) predictors (CSV). Additional File 7. Position weight matrices for the MHCflurry antigen processing predictors (XLSX). Additional File 8. Antigen processing predictions for proteosome-cleaved peptides identified using “mass spectrometry analysis of proteolytic peptides” (MAPP) by Wolf-Levy et al.
DOI: 10.5281/zenodo.3712820
title: Chemical modification of proteins by insertion of synthetic peptides using tandem protein trans-splicing

description: Source data underlying Figs 2c-e, 3c,e-f, 6c,d,f, and Supplementary Figs S1c, S3a, S4c-e,h-j, S5c, S8b, S9d-e, S10d-e, S11d
DOI: 10.5281/zenodo.3712821
title: Chemical modification of proteins by insertion of synthetic peptides using tandem protein trans-splicing

description: Source data underlying Figs 2c-e, 3c,e-f, 6c,d,f, and Supplementary Figs S1c, S3a, S4c-e,h-j, S5c, S8b, S9d-e, S10d-e, S11d
DOI: 10.5281/zenodo.3755704
title: VICINITY IoT Use Case Data Sets

description: This repository contains Internet-of-Things (IoT) use case data sets from the VICINITY project. The use cases are described under https://vicinity2020.eu, where also the contributing companies are described in more detail. The use cases include: eHealth use case data by GNOMON/CERTH (anonymized) Smart parking, building control use case data by HITS, TINYM Energy management data set by ENERC Several other, smaller use cases with less data from open call winners. The data sets have also been the basis for the publications available for download under the same URL; the folder AAU gives additionally the data from AAU's publications.
description: All data has been checked to contain no personal data and is anonymized.
DOI: 10.5281/zenodo.3755705
title: VICINITY IoT Use Case Data Sets

description: This repository contains Internet-of-Things (IoT) use case data sets from the VICINITY project. The use cases are described under https://vicinity2020.eu, where also the contributing companies are described in more detail. The use cases include: eHealth use case data by GNOMON/CERTH (anonymized) Smart parking, building control use case data by HITS, TINYM Energy management data set by ENERC Several other, smaller use cases with less data from open call winners. The data sets have also been the basis for the publications available for download under the same URL; the folder AAU gives additionally the data from AAU's publications.
description: All data has been checked to contain no personal data and is anonymized.
DOI: 10.17632/5673n552yj.1
title: Reference transcriptomes of coelomocytes
DOI: 10.17632/8s4nn4y4xh.1
title: FUZZY SAFETY CULTURE ASSESSMENT MODEL (FSCAM); A COMPARISON BETWEEN WHITE COLLAR AND BLUE COLLAR EMPLOYEES

description: This dataset includes the research data for the below mentioned study. FUZZY SAFETY CULTURE ASSESSMENT MODEL (FSCAM); A COMPARISON BETWEEN WHITE COLLAR AND BLUE COLLAR EMPLOYEES IN A METAL MANUFACTURING INSTALLATION IN TURKEY
DOI: 10.17632/9tyhcrjrnr.1
title: Global radiation in a rare biosphere soil diatom

description: This dataset contains alignment files, phylogenies and other data-files associated with the paper "Global radiation in rare biosphere soil diatom" by Pinseel et al.
DOI: 10.17632/p5z5hhm736.1
title: Replication: Cheating, loss aversion, and moral attitudes in Vietnam

description: We use the coin-flip paradigm and a short survey about moral attitudes under three conditions to answer three questions: (i) Do people cheat more when financial incentives are present in comparison with no incentives? (ii) Do they find it more difficult to maintain their ethical standards when they have been given a small amount of money? and (iii) Do moral attitudes predict cheating behavior? Using a sample of Vietnamese college students, we discover that a financial incentive does not matter until people feel that they are facing a loss. In addition, we do not find any evidence that moral attitudes could predict the unethical behavior in our sample. Our findings shed further light on cheating behaviors and loss aversion through an experimental investigation.
DOI: 10.17632/yyx2hp3s94.1
title: Learner Autonomy research- Oman

description: The purpose of this study was to explore EFL teachers' perceptions of learner autonomy (LA), their actual practices and the challenges and factors affecting promoting learner autonomy at secondary schools in Oman. The study also investigated if there is any association between teachers' general beliefs about promoting LA and their academic level, gender and years of experience. The data collection instruments included a teachers’ perceptions questionnaire, classroom observation data, and interview with teachers. Frequency counts, ordinal regression analysis and grounded theory were used to analyse the quantitative and qualitative data. The results revealed that although EFL teachers at Omani secondary schools practice some strategies that promote learner autonomy, these practices are not intentionally and exclusively implemented for promoting LA. Moreover, the results showed some discrepancies between teachers’ beliefs about promoting learner autonomy and their actual practices due to some constraints and challenges that affect this process. These challenges involve the intensive English curriculum, teachers being overloaded with numerous school tasks besides teaching, learners' limited exposure to English outside classroom and teachers' limited background in the concept, principles, and practices of learner autonomy. No significant association was found between the teachers' general beliefs about learner autonomy and their particulars.
DOI: 10.17632/px5hdx98bd.1
title: Parakeets making legitimate visits to Erythrina velutina flowers

description: Videos show two species of parakeets visiting Erythrina velutina flowers in an urban area of Brazil, Ilha Solteira, state of São Paulo. When visiting flowers, many parrots usually remove or damage the flowers to access the nectar. The case illustrated here is different: there is no removal or destruction. Most importantly, note the contact with the stamens and stigma. Therefore, the videos show neotropical parrots acting as pollinators. The phenomenon is rare and deserves further investigation. The urban environment offers many opportunities in this regard.
DOI: 10.5281/zenodo.3754252
title: HpTonB(179-285) simulation Amber ff99SB-ILDN

description: MD simulation of C-terminal domain of TonB protein from <em>Helicobacter Pylori</em> HpTonB(179-285) with Amber ff99SB-ILDN force field. Trajectory contains the whole 600ns of the simulation.
DOI: 10.5281/zenodo.3754253
title: HpTonB(179-285) simulation Amber ff99SB-ILDN

description: MD simulation of C-terminal domain of TonB protein from <em>Helicobacter Pylori</em> HpTonB(179-285) with Amber ff99SB-ILDN force field. Trajectory contains the whole 600ns of the simulation.
DOI: 10.5255/ukda-sn-854143
title: The economic and demographic transition, mortality, and comparative development 2010-2015
DOI: 10.5281/zenodo.3755721
title: NEMO ORCA05 FOCI Test Data

description: This is nine years of monthly NEMO data that is very similar to data written by the Ocean component of FOCI from GEOMAR. Feel free to use it for development and testing but be aware that these data are in no way suitable for scientific use. Data prepared by Jan Harlaß and Willi Rath (2020)
DOI: 10.15468/ghk3mp
title: Two new genera, Limnohalacarus and Soldanellonyx (Acari: Halacaridae) in freshwater halacarid mites with additional new records from Turkey

description: This dataset contains the digitized treatments in Plazi based on the original journal article Durucan, Furkan (2020): Two new genera, Limnohalacarus and Soldanellonyx (Acari: Halacaridae) in freshwater halacarid mites with additional new records from Turkey. Persian Journal of Acarology 9 (1): 1-11, DOI: 10.22073/pja.v9i1.57733
DOI: 10.15468/hy8dg5
title: First record of Petrobia (Petrobia) pseudotetranychina (Trombidiformes: Tetranychidae) in Asia, with two new host plants for Tetranychidae from Iran

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shakeri, Zohreh, Latifi, Malihe (2020): First record of Petrobia (Petrobia) pseudotetranychina (Trombidiformes: Tetranychidae) in Asia, with two new host plants for Tetranychidae from Iran. Persian Journal of Acarology 9 (1): 83-85, DOI: 10.22073/pja.v9i1.55165
DOI: 10.17632/mdys8hx3xy.3
title: Gentiana lutea subsp. lutea information

description: We provide the data on the accessions of Gentiana lutea subsp. lutea utilised in the germination study reported in the paper entitled "Predicting the Consequences of Global Warming on Gentiana lutea Germination at the Edge of its Distributional and Ecological Range" actually under review in PeerJ Journal. (information updated of 03 January 2020)
DOI: 10.5281/zenodo.3754605
title: Version 2 of Dataset for paper "Drivers' Manoeuvre Prediction for Safe HRI"

description: Second version of the dataset published for "Drivers’ Manoeuvre Prediction for Safe HRI". Details in the README file.
DOI: 10.5281/zenodo.3755720
title: NEMO ORCA05 FOCI Test Data

description: This is nine years of monthly NEMO data that is very similar to data written by the Ocean component of FOCI from GEOMAR. Feel free to use it for development and testing but be aware that these data are in no way suitable for scientific use. Data prepared by Jan Harlaß and Willi Rath (2020)
DOI: 10.15468/7ch7pn
title: Replacement name for a homonym in Hypoaspis Canestrini (Acari: Laelapidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Joharchi, Omid (2019): Replacement name for a homonym in Hypoaspis Canestrini (Acari: Laelapidae). Persian Journal of Acarology 9 (2): 207-208, DOI: 10.22073/pja.v9i2.60758
DOI: 10.25345/c5b133
title: MassIVE MSV000085303 - Drosophila melanogaster S2 cells oeverexpression RNase H1 pull down assay
title: Mass spectrometry data of Pull-down assay of Drosophila melanogaster S2 cells overexpressing tag version of RNase H1, nuclear targeted RNase H1 (M1V), mitochondrial-targeted RNase H1 (M16V), catalytic inactive RNase H1 (RNase H1 D252N) and mtYFP. RNase H1 (QE_0817_14246, 14201, 14203, 14248 and 14207 files) M1V (QE_0817_14251, 14212, 14214, 14253 and 14218) M16V (QE_0817_14256, 14223, 14225, 14258 and 14229) mtYFP (QE_0817_14232, 14234, 14236, 14238 and 14240) D252N (OE906_30376, 303378, 30380, 30382 and 30384)
DOI: 10.5281/zenodo.3755711
title: Analysis Of Monthly And Daily Annual Extreme Precipitation For Vadodara

description: Processed data for analysis 1 Monthly One day Extreme Rainfall IMD 2 Station wise Number of Extreme Events P95 SWDC 3 Urban Rural Moving Average Rainfall Ratio SWDC
description: Original daily rainfall time series data used for the analysis is purchased/obtained with undertaking from the India Meteorological Department, Gujarat State Water Data Center and The Maharaja Sayajirao University of Baroda meteorological observatory.
DOI: 10.5281/zenodo.3755918
title: MOSTWAS models, TWAS summary statistics, and simulation results for Bhattacharya and Love, 2020

description: This compressed folder contains three sub-folders that all pertain to models and results generated with Multi-Omic Strategies for Transcriptome-Wide Association Studies (MOSTWAS): <em>MOSTWAS_Models</em> contains compressed folders for MOSTWAS models trains on TCGA breast cancer and ROS/MAP pre-frontal cortex multi-omic data. <em>Simulations </em>contains Simulation_Results_MOSTWAS.xlsx that provides full simulation results outlined in Bhattacharya and Love, 2020 (paper accompanying MOSTWAS). <em>TWAS_associations</em> contains four Excel files that provide MOSTWAS and local-only TWAS associations for breast cancer-specific survival (using iCOGs GWAS summary statistics), late-onset Alzheimer's disease risk (using IGAP GWAS summary statistics), and major depressive disorder risk (using PGC GWAS and UK Biobank GWAX summary statistics).
DOI: 10.5281/zenodo.3755919
title: MOSTWAS models, TWAS summary statistics, and simulation results for Bhattacharya and Love, 2020

description: This compressed folder contains three sub-folders that all pertain to models and results generated with Multi-Omic Strategies for Transcriptome-Wide Association Studies (MOSTWAS): <em>MOSTWAS_Models</em> contains compressed folders for MOSTWAS models trains on TCGA breast cancer and ROS/MAP pre-frontal cortex multi-omic data. <em>Simulations </em>contains Simulation_Results_MOSTWAS.xlsx that provides full simulation results outlined in Bhattacharya and Love, 2020 (paper accompanying MOSTWAS). <em>TWAS_associations</em> contains four Excel files that provide MOSTWAS and local-only TWAS associations for breast cancer-specific survival (using iCOGs GWAS summary statistics), late-onset Alzheimer's disease risk (using IGAP GWAS summary statistics), and major depressive disorder risk (using PGC GWAS and UK Biobank GWAX summary statistics).
DOI: 10.7910/dvn/gxe1on/i2lbwh
title: SPIRIT checklist.pdf

description: SPIRIT checklist
DOI: 10.7910/dvn/gxe1on/mdvhnp
title: Data collection form.pdf

description: Data collection form
DOI: 10.14469/hpc/7119
title: 1 All-Inorganic CsPbBr3 Nanocrystals: Gram-Scale Mechanochemical Synthesis and Selective Photocatalytic CO2 Reduction to Methane

description: We reported a fast and convenient mechanochemical synthesis of CsPbBr3 perovskite nanocrystals with scale-up capability and control over crystal size and morphology. Furthermore, we explored their use for gas-phase photocatalytic CO2 reduction using water vapor under simulated sun light. More attractively, the mechanochemically prepared composite of CsPbBr3 nanosheets with Cu-loaded reduced graphene oxide (Cu-RGO) showed significantly improved activity for CO2 photoreduction to CH4 with a selectivity of 98.5% on an electron basis and a remarkable apparent quantum efficiency of 1.26% at 523 nm. These results will contribute to the rational design and application of halide perovskites for CO2 photocatalytic reduction. This work has been accepted for publication in ACS Applied Energy Materials (DOI:10.1021/acsaem.0c00195). This dataset includes XRD, UV-vis DRS, PL, XPS, Raman, N2 adsorption-desorption, and CO2 adsorption characterisation data and photocatalytic CO2 reduction measurements of all the CsPbBr3 nanocrystals and CsPbBr3-Cu-RGO composites which are reported in the accepted main manuscript as well as supplementary information. Furthermore, the detailed experimental procedures for all the measurements were given in the accepted manuscript.
DOI: 10.15468/7be4yr
title: Corrections and additions to Leptus Latreille (Trombidiformes: Erythraeidae) of the world: revised classification and keys

description: This dataset contains the digitized treatments in Plazi based on the original journal article Saboori, Alireza, Hakimitabar, Masoud, Khademi, Narjes, Masoumi, Hamidreza, Katouzian, Ahmad-Reza (2019): Corrections and additions to Leptus Latreille (Trombidiformes: Erythraeidae) of the world: revised classification and keys. Persian Journal of Acarology 9 (2): 209-212, DOI: 10.22073/pja.v9i2.60814
DOI: 10.5258/soton/d1329
title: Data set for Time-Resolved Non-Invasive Metabolomic Monitoring of Microfluidic Spheroid And Monolayer Cell Cultures By NMR

description: This dataset supports the publication: B. Patra, M. Sharma, W. Hale, and Marcel Utz. Time-Resolved Non-Invasive Metabolomic Monitoring of Microfluidic Spheroid And Monolayer Cell Cultures By NMR. Raw data including micrographs for a study of microfluidic cell cultures by NMR spectroscopy
DOI: 10.5281/zenodo.3755740
title: IO Islamic 2580. Nishân-i-Ḥaidarî, History of the Reigns of Ḥaidar 'Alî and His Son Tîpû Sulṭân of Mysore

description: IO Islamic 2580. Nishân-i-Ḥaidarî, History of the Reigns of Ḥaidar ‘Alî and His Son Tîpû Sulṭân of Mysore
DOI: 10.5281/zenodo.3755741
title: IO Islamic 2580. Nishân-i-Ḥaidarî, History of the Reigns of Ḥaidar 'Alî and His Son Tîpû Sulṭân of Mysore

description: IO Islamic 2580. Nishân-i-Ḥaidarî, History of the Reigns of Ḥaidar ‘Alî and His Son Tîpû Sulṭân of Mysore
DOI: 10.7910/dvn/gxe1on/aezykp
title: IRB approved protocol.pdf

description: IRB approved protocol
DOI: 10.7910/dvn/gxe1on/b0n6qw
title: Trial registration.pdf

description: Trial registration
DOI: 10.7910/dvn/gxe1on/rexud5
title: IRB approval.pdf

description: IRB approval
DOI: 10.3886/e112266
title: Replication Data For: Do Parents Value School Effectiveness?

description: School choice may lead to improvements in school productivity if parents' choices reward effective schools and punish ineffective ones. This mechanism requires parents to choose schools based on causal effectiveness rather than peer characteristics. We study relationships among parent preferences, peer quality, and causal effects on outcomes for applicants to New York City's centralized high school assignment mechanism. We use applicants' rank-ordered choice lists to measure preferences and to construct selection-corrected estimates of treatment effects on test scores, high school graduation, college attendance, and college quality. Parents prefer schools that enroll high-achieving peers, and these schools generate larger improvements in short- and long-run student outcomes. Preferences are unrelated to school effectiveness and academic match quality after controlling for peer quality.