cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4568587
title: Selected biological journal names and sample bibliography databases

description: This upload contains eight supplementary files in support of X. Dong, G. Patton, A. Nyren, B. Patton and P. Nyren, 2009, "Managing<br> biological journal citations: The use of a BiBTEX journal titles and abbreviations database in conjunction with LATEX type-setting system," published in Issues in Science & Technology Librarianship, The 2009 Summer Issue (Number 58). DOI:10.5062/F4GH9FVM The article can be accessed at <strong>http://www.istl.org/09-summer/article3.html</strong> These documents were originally posted on the following website: https://web.archive.org/web/20130311160032/http://www.infoclearinghouse.com/tiki-index.php?page=LaTeX+Applications However, the website is longer available as of today (February 27, 2021). To prevent these documents from getting lost, I have decided to post them on zenodo and make them freely available. In this post, some of the file names have been changed. Specifically, Supplementary 1.txt, Supplementary 2.txt,..., Supplementary 5.txt, have been renamed as MyRef.bib, Jshort.bib, Jshort_dot.bib, JLong.bib, and XDRef.bib, respectively. BioJournalsOK.pdf is a detailed description of the method described by Dong et al. (2009) in ISTL. MyRef.bib is a short version of XDRef.bib, a collection of 835 eco-physiological references by Dr. Xuejun Dong. JLong.bib, Jshort.bib, and Jshort_dot.bib are three versions of the same set of 4387 biological journal names database based on an original database by Drs. Lloyd Hough and Geoff Patton at: http://home.ncifcrf.gov/research/bja/ The email address of Dr. Patton is: gwpatton1@yahoo.com More entries were added by Dr. Xuejun Dong. Either of the three versions of the journal names database can be used in combination with bibliography files in a LaTeX document involving bibliography citations.. In \bibliography{Jnames,bibfile1,bibfile2,...},<br> always list the journal names data base "Jnames" first, where "Jnames" can be Jshort.bib, Jshort_dot.bib, or JLong.bib. Supplementary_6.pdf and Supplementary_7.pdf provide additional information about the bibliography databases.
DOI: 10.15468/dl.hpy2kg
title: Occurrence Download

description: A dataset containing 24965 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 24965 records from 414 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015616-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qf9s2j
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ptinus bicinctus Sturm, 1837",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 80 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015618-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/41f92f5c263ba689dee002f30f8dbd91
title: Multiple Element Limitation in Northern Hardwood Ecosystems (MELNHE): Sugar Maple Sap Sweetness and Nutrients, and Foliar Gas Exchange and Nutrients, 2013

description: Sugar maple (Acer saccharum Marsh.) sap sweetness and elemental concentrations, foliar gas exchange, and foliar elemental concentrations were measured in 2013 in Bartlett Experimental Forest stands C6, C8, and C9 and Jeffers Brook stands JBM and JBO. In February and March 2013, sugar maples were sampled for sap sweetness and elemental concentrations of potassium (K), aluminum (Al), calcium (Ca), magnesium (Mg), manganese (Mn), phosphorus (P), and strontium (Sr). In July 2013, leaves from four sugar maple trees per plot, representing the two highest and lowest sap sugar concentrations, were sampled for foliar gas exchange and foliar elemental analyses of Ca, K, Mn, P, nitrogen (N), and silicon (Si). 
 
 Additional detail on the MELNHE project, including a datatable of site descriptions and a pdf file with the project description and diagram of plot configuration can be found in this data package: https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-hbr&identifier=344 
 These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
DOI: 10.15468/dl.8scwsf
title: Occurrence Download

description: A dataset containing 19204 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myiopagis caniceps (Swainson, 1835)"
 ]
}

 The dataset includes 19204 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015619-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36wg22
title: Occurrence Download

description: A dataset containing 2306 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bengal Tiger (Panthera tigris) Sighting based on Photographs from Facebook in India"
 ]
}

 The dataset includes 2306 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015620-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e223341v1
title: COEP Replication Package for "The Impacts of Shortage Area Designations on Mortality"

description: Spatial mismatch between patients and physicians constrains access to medical care and contributes to differential health outcomes. Health Professional Shortage Area (HPSA) designations identify areas where there are too few primary care physicians to treat the local population. State and federal programs are used to incentivize an increase in primary care services for designated communities. Propensity score matching methods estimate the effect of county-level primary care HPSA designation on mortality. Designated counties experience an average three percent decline in overall mortality, a six percent decline in the cancer mortality rate and a 13% decline in the stroke mortality rate.
DOI: 10.15468/dl.k8ujbk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Database of Vascular Plants of Canada (VASCAN)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015622-250310093411724/datasets/export for details.
DOI: 10.15468/dl.ggvh9w
title: Occurrence Download

description: A dataset containing 51637 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myiopagis gaimardii (Orbigny, 1840)"
 ]
}

 The dataset includes 51637 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015608-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/9b3b2f032161b09c4ff6bec8892bd4b0
title: Eight Mile Lake Research Watershed: hourly meteorological data, 2004-2024

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. This data set provides annual meterological data.
DOI: 10.6084/m9.figshare.28620632
title: ODR of IRF and BCVA

description: The dataset from the study "The Association Between Optical Density Ratio of Intraretinal Fluid and Visual Acuity in Neovascular Age Related Macular Degeneration After 36 Months of Follow Up"
DOI: 10.15468/dl.vtpkpt
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (fd70f580-4ce2-11db-b80e-b8a03c50a862, 493fe050-055d-11d8-b84f-b8a03c50a862, 06fcbbf0-0562-11d8-b851-b8a03c50a862, 8483a1f0-1032-11db-ae00-b8a03c50a862, b4640710-8e03-11d8-b956-b8a03c50a862)",
 "TaxonKey is Trachylepis affinis (Gray, 1838)"
 ]
}

 The dataset includes 238 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015624-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jmxew
title: Occurrence Download

description: A dataset containing 6272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-100.47447 51.20641,-100.3109 37.24175,-67.43323 37.11142,-68.90536 51.71597,-89.1881 51.10382,-100.47447 51.20641))",
 "HasGeospatialIssue is false",
 "TaxonKey is Pinus banksiana Lamb."
 ]
}

 The dataset includes 6272 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015625-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eeuykn
title: Occurrence Download

description: A dataset containing 17177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Icterus abeillei (Lesson, 1839)",
 "Year 2010-2024"
 ]
}

 The dataset includes 17177 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015627-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uyby93
title: Occurrence Download

description: A dataset containing 709 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centrocoris variegatus Kolenati, 1845",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 709 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015628-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgmkzx
title: Occurrence Download

description: A dataset containing 40788 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "GbifRegion is Latin America and the Caribbean",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Psittacara wagleri (G.R.Gray, 1845)",
 "Year 2000-2025"
 ]
}

 The dataset includes 40788 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015626-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nygsds
title: Occurrence Download

description: A dataset containing 300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is CR",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 300 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015629-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13745076
title: Generative AI aids the publication of fake articles: Replication package

description: This package contains Python, shell, awk scripts, and data used to obtain the curated table associated with the above named letter.

The following items are included.



README.md: This file

Makefile: Orchestrate the articles' analysis

article-details.xlsx: Curated table with details of published articles.

get-metadata.sh: Obtain article metadata pages from the journal's web site

apply-to-pdfs.sh: Apply the specified Python script to all article PDFs

extract-citations-emails.py: Extract number of probable in-text citations and corresponding author email from article PDF

extract-doi-affiliations.py: Extract article DOI and affiliations from an article's metadata

extract-all-doi-affiliations.sh: Extract article DOI and affiliations from all articles' metadata

emails-to-csv.awk: Convert emails and article numbers to CSV with URL for sending emails

global-us/metadata/: Article metadata as HTML files

global-us/global-us.mellbaou.com/index.php/global/article/download/: Article PDFs as files with no suffix
DOI: 10.5281/zenodo.13745075
title: False Authorship: Methods and materials package

description: This package contains Python, shell, awk scripts, and data used to obtain the curated table and excerpt associated with the above named article.

Data Contents

The following data files are included. * README.md: This file * article-details.xlsx: Curated table with details of published articles in Microsoft Excel file format * index.html: HTML document with * links to GIJIR materials saved in the Internet Archive * a list of all the GIJIR articles’ citation data according to Crossref and links to each article’s locally available landing page, full-text PDF, plus links to Crossref metadata and the article via DOI and original journal URL. (Note that non-local, non-archived links may rot over time.) * ybs-works.json: Results of Crossref query to obtain all the publisher’s works made on 2024-09-22 * ChatGPT: Prompts and responses associated with the generation of a fake article in one of the journal’s topics. * global-us/metadata/: Article metadata as HTML files collected on 2024-09-10 * global-us/global-us.mellbaou.com/index.php/global/article/download/: A copy of the journal’s article PDFs as crawled on 2024-09-10 * spinellis business - Google Scholar.pdf: Printout of a Google Search query for the terms spinellis business made on 2025-02-06.

Executable Contents

The following programs and scripts are used to obtain the above contents.



Makefile: Commands that orchestrate the articles’ analysis

get-metadata.sh: Obtain article metadata pages from the journal’s web site

apply-to-pdfs.sh: Apply the specified Python script to all article PDFs

extract-citations-emails.py: Extract number of probable in-text citations and corresponding author email from article PDF

extract-doi-affiliations.py: Extract article DOI and affiliations from an article’s metadata

extract-all-doi-affiliations.sh: Extract article DOI and affiliations from all articles’ metadata

emails-to-csv.awk: Convert emails and article numbers to CSV with URL for sending emails
DOI: 10.5281/zenodo.15047991
title: False Authorship: Methods and materials package

description: This package contains Python, shell, awk scripts, and data used to obtain the curated table and excerpt associated with the above named article.

Data Contents

The following data files are included. * README.md: This file * article-details.xlsx: Curated table with details of published articles in Microsoft Excel file format * index.html: HTML document with * links to GIJIR materials saved in the Internet Archive * a list of all the GIJIR articles’ citation data according to Crossref and links to each article’s locally available landing page, full-text PDF, plus links to Crossref metadata and the article via DOI and original journal URL. (Note that non-local, non-archived links may rot over time.) * ybs-works.json: Results of Crossref query to obtain all the publisher’s works made on 2024-09-22 * ChatGPT: Prompts and responses associated with the generation of a fake article in one of the journal’s topics. * global-us/metadata/: Article metadata as HTML files collected on 2024-09-10 * global-us/global-us.mellbaou.com/index.php/global/article/download/: A copy of the journal’s article PDFs as crawled on 2024-09-10 * spinellis business - Google Scholar.pdf: Printout of a Google Search query for the terms spinellis business made on 2025-02-06.

Executable Contents

The following programs and scripts are used to obtain the above contents.



Makefile: Commands that orchestrate the articles’ analysis

get-metadata.sh: Obtain article metadata pages from the journal’s web site

apply-to-pdfs.sh: Apply the specified Python script to all article PDFs

extract-citations-emails.py: Extract number of probable in-text citations and corresponding author email from article PDF

extract-doi-affiliations.py: Extract article DOI and affiliations from an article’s metadata

extract-all-doi-affiliations.sh: Extract article DOI and affiliations from all articles’ metadata

emails-to-csv.awk: Convert emails and article numbers to CSV with URL for sending emails
DOI: 10.5281/zenodo.10465503
title: One-pot synthesis of high-capacity sulfur cathodes via in-situ polymerization of a porous imine-based polymer

description: [This repository contains the source data for the manuscript "One-pot synthesis of high-capacity sulfur cathodes via in-situ polymerization of a porous imine-based polymer"]
DOI: 10.5281/zenodo.10465504
title: One-pot synthesis of high-capacity sulfur cathodes via in-situ polymerization of a porous imine-based polymer

description: [This repository contains the source data for the manuscript "One-pot synthesis of high-capacity sulfur cathodes via in-situ polymerization of a porous imine-based polymer"]
DOI: 10.5066/p13scnmp
title: Grass Carp Movement and Removal Effort Data from the Sandusky River, Lake Erie, Ohio, USA from 2022 to 2023

description: Data include grass carp position and sampling data from 2022 to 2023. We used grass carp that were implanted with acoustic transmitters. The position data was generated in Fathom Position from receivers that composed several VEMCO Positioning Systems (VPS). We also queried the Great Lakes Acoustic Telemetry Observation Network (GLATOS) to obtain non-VPS position detections from receivers made from multiple projects. Sampling data was downloaded from the grass carp capture database hosted on ArcGIS Online. These data contain information such as location of event, time gears were deployed and retrieved, and number of grass carp caught. Environmental factors associated with these data (including average water temperature, depth, and backwater classification) are also provided. Specific datasets include SR_boat_count.csv and SR_boat_count_daily.csv which describe the number of boats performing grass carp removal on the Sandusky River; SR_electrofish_time.csv containing cumulative electrofishing shock time in the Sandusky River by month; SR_glatos_GC_2223.csv containing detections of grass carp in the Sandusky River between the VPS arrays provided by GLATOS; SR_temp_avg_EST.csv which contains average temperature in the Sandusky River summarized by hour; Sandusky_depth_84.tif which is a raster file containing bathymetery data for the Sandusky River; and backwater.shp, a shape file containing polygon features defining areas in the Sandusky River designated as backwater.
DOI: 10.57967/hf/4875
title: Diffuse_Map_Surfaces
DOI: 10.15468/dl.h3n2me
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Krapfia haemantha (Ulbr.) M.Tamura"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015630-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28620245.v1
title: 16S_fastq_files2021

description: The dataset contains 16S RNA sequnces of the bacterial microbiome in fastq format from a run in 2021
DOI: 10.6084/m9.figshare.28620245
title: 16S_fastq_files2021

description: The dataset contains 16S RNA sequnces of the bacterial microbiome in fastq format from a run in 2021
DOI: 10.25345/c5np1ww9f
title: MassIVE MSV000097362 - Prebiotic Intervention Restructures Host and Microbe Proteome Signatures in The Plasma Extracellular Vesicles of Parkinsons Disease Patients
title: Prebiotic Intervention Restructures Host and Microbe Proteome Signatures in The Plasma Extracellular Vesicles of Parkinsons Disease Patients
DOI: 10.15468/dl.2t5sxw
title: Occurrence Download

description: A dataset containing 46695 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phaeomyias murina (Spix, 1825)"
 ]
}

 The dataset includes 46695 records from 238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015632-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m9nxg5
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elegia verreauxii Mast."
 ]
}

 The dataset includes 66 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189205-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffbmsk
title: Occurrence Download

description: A dataset containing 621 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eucalyptus tetrapleura L.A.S.Johnson"
 ]
}

 The dataset includes 621 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000610-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-1396
title: Violence in the city -- An end or a beginning?, 1965

description: Governor's Commission on the Los Angeles Riots. "Violence in the city -- An end or a beginning?" A report, 1965 December 2.
DOI: 10.15468/dl.gh28f5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Pomacanthus semicirculatus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189198-230224095556074/datasets/export for details.
DOI: 10.15468/dl.e9kh22
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Chaetodon meyeri)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189215-230224095556074/datasets/export for details.