cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.7bp03
title: Data from: Plastic and evolutionary gene expression responses are correlated in European grayling (Thymallus thymallus) sub-populations adapted to different thermal environments

description: Understanding how populations adapt to changing environmental conditions
 is a long-standing theme in evolutionary biology. Gene expression changes
 have been recognized as an important driver of local adaptation, but
 relatively little is known regarding the direction of change and in
 particular, about the interplay between plastic and evolutionary gene
 expression. We have previously shown that the gene expression profiles of
 European grayling (Thymallus thymallus) populations inhabiting different
 thermal environments include both plastic and evolutionary components.
 However, whether the plastic and evolutionary responses were in the same
 direction was not investigated in detail, nor was the identity of the
 specific genes involved. In this study, we show that the plastic changes
 in protein expression in response to different temperatures are highly
 correlated with the evolutionary response in grayling subpopulations
 adapted to different thermal environments. This finding provides
 preliminary evidence that the plastic response most likely facilitates
 adaptation during the early phases of colonization of thermal
 environments. The proteins that showed significant changes in expression
 level between warm and cold temperature treatments were mostly related to
 muscle development, which is consistent with earlier findings
 demonstrating muscle mass differentiation between cold and warm grayling
 populations.
description: Supplementary
 tableProtein expression
 ratios after log2-transformation, impute of missing values by normal
 distribution and loess normalisation. Results of the differential gene
 expression analyses.
DOI: 10.5061/dryad.mb437
title: Data from: Serial founder effects and genetic differentiation during worldwide range expansion of monarch butterflies

description: Range expansions can result in founder effects, increasing genetic
 differentiation between expanding populations and reducing genetic
 diversity along the expansion front. However, few studies have addressed
 these effects in long-distance migratory species, for which high dispersal
 ability might counter the effects of genetic drift. Monarchs (Danaus
 plexippus) are best known for undertaking a long-distance annual migration
 in North America, but have also dispersed around the world to form
 populations that do not migrate or travel only short distances. Here, we
 used microsatellite markers to assess genetic differentiation among 18
 monarch populations and to determine worldwide colonization routes. Our
 results indicate that North American monarch populations connected by land
 show limited differentiation, probably because of the monarch's
 ability to migrate long distances. Conversely, we found high genetic
 differentiation between populations separated by large bodies of water.
 Moreover, we show evidence for serial founder effects across the Pacific,
 suggesting stepwise dispersal from a North American origin. These findings
 demonstrate that genetic drift played a major role in shaping allele
 frequencies and created genetic differentiation among newly formed
 populations. Thus, range expansion can give rise to genetic
 differentiation and declines in genetic diversity, even in highly mobile
 species.
description: worldwide
 datamicrosatellite data from
 18 locations worldwide
DOI: 10.15468/dl.b7v8mw
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stictocardia queenslandica",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 38 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000789-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.1s8f7
title: Data from: At risk of population decline? An ecological and genetic approach to the threatened palm species Butia eriospatha (Arecaceae) of southern Brazil

description: To estimate the risk of population decline for the threatened palm species
 Butia eriospatha, we investigated the patterns of demography, natural
 regeneration, herbivory, and the levels of genetic diversity using 9
 microsatellite loci from both adults and seedlings sampled from 4
 populations in Southern Brazil (n = 330). Our results indicate that cattle
 grazing in B. eriospatha population areas severely affect their
 demographic structure. Three B. eriospatha populations showed a bimodal
 age structure made up of adult plants and seedlings and high rates
 (&gt;77%) of livestock herbivory. For 1 population, we describe and
 quantify for the first time the occurrence of 6 ontogenetic stages for
 this threatened palm species. Populations of B. eriospatha showed high
 levels of genetic differentiation (F ST adult plants = 0.287, F ST
 seedlings = 0.175). The amount of observed heterozygosity differed
 significantly between small (H O = 0.329) and large populations (H O =
 0.461), indicating that small populations can be more susceptible to
 genetic drift. With no recruitment and a mortality rate of 2.0%, we show
 that the populations investigated in this study would be at an extremely
 high risk of local extinction, with a greater than 50% reduction in the
 effective population size, in the next 40 years. Although this study
 highlights the importance of analyzing both population ecology parameters
 and genetic data to better understand the level of risk facing threatened
 species, we emphasize that policy actions are urgently needed for
 effective conservation of this vulnerable biological resource.
description: Genotypes of Butia
 eriospatha individuals.Genotypes of Butia
 eriospatha individuals. Nine microsatellite loci were used to genotype
 adults and seedlings individuals of B. eriospatha.Genotypes_Butia_eriospatha
 Sheet1.pdfDemography of Butia
 eriospatha.This data file contain
 demographic data for four B. eriospatha populations.demography_Butia_eriospatha
 Sheet1.pdf
DOI: 10.5281/zenodo.18382468
title: Datasets for RTAS-Net

description: This Zenodo record contains benchmark datasets for RTAS-Net, including ISPRS Potsdam, Vaihingen and LoveDA. Each dataset is provided as a zip file containing images in standard format suitable for training and evaluation. These datasets support the experiments described in the manuscript ‘RTAS-Net: A ResNet-Transformer-ASPP Semantic Segmentation Network for Remote Sensing Images.
DOI: 10.5281/zenodo.18382469
title: Datasets for RTAS-Net

description: This Zenodo record contains benchmark datasets for RTAS-Net, including ISPRS Potsdam, Vaihingen and LoveDA. Each dataset is provided as a zip file containing images in standard format suitable for training and evaluation. These datasets support the experiments described in the manuscript ‘RTAS-Net: A ResNet-Transformer-ASPP Semantic Segmentation Network for Remote Sensing Images.
DOI: 10.5517/ccdc.csd.cc26mrk5
title: CCDC 2044777: Experimental Crystal Structure Determination

description: Related Article: Muhammad Ishaq mishaq|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.21pm7p6n
title: Data from: Extensive gene flow over Europe and possible speciation over Eurasia in the ectomycorrhizal basidiomycete Laccaria amethystina complex.

description: Biogeographic patterns and large-scale genetic structure have been little
 studied in ectomycorrhizal fungi, despite the ecological and economic
 importance of ectomycorrhizal symbioses. We coupled population genetics
 and phylogenetic approaches to understand spatial structure in fungal
 populations on a continental scale. Using 9 microsatellite markers, we
 characterised gene flow among 16 populations of the widespread
 ectomycorrhizal basidiomycete Laccaria amethystina over Europe (over
 2900km). We also widened our scope to two additional populations from
 Japan (104 km away), and compared them with European populations through
 microsatellite markers and multi-locus phylogenies, using 3 nuclear genes
 (NAR, G6PD and ribosomal DNA) and two mitochondrial ribosomal genes.
 European L. amethystina populations displayed limited differentiation
 (average FST=0.041) and very weak isolation by distance. This panmictic
 European pattern may result from effective aerial dispersal of spores,
 high genetic diversity in populations, and mutualistic interactions with
 multiple hosts that all facilitate migration. The multi-locus phylogeny
 based on nuclear genes confirmed that Japanese and European specimens were
 closely related but clustered on a geographical basis. By using
 microsatellite markers, we found that Japanese populations were strongly
 differentiated from the European populations (FST=0.416), more than
 expected by extrapolating the European pattern of isolation by distance.
 Population structure analyses clearly separated the populations into two
 clusters, European and Japanese clusters. We discuss the possibility of
 isolation by distance in a continuous population (considering some
 evidence for a ring species over the Northern Hemisphere) versus an
 allopatric speciation over Eurasia, making L. amethystina a promising
 model of intercontinental species for future studies.
description: MicrosatelliteGenotypes_Vincenotetal_MolEcol_LaccariaAmethystinaPopulationGeneticsPhylogenyAccessionNumbers_Vincenot etal_MolEcol_LaccariaAmethystinaPhylogeography
DOI: 10.15468/dl.svkghe
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Records of Ursus arctos within the territory of Chornobyl Exclusion Zone, Ukraine, during 2003-2025"
 ]
}

 The dataset includes 59 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000791-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.7b187
title: Data from: Understanding the role of physician attire on patient perceptions: a systematic review of the literature— targeting attire to improve likelihood of rapport (TAILOR) investigators

description: Objectives: Despite a growing body of literature, uncertainty regarding
 the influence of physician dress on patients’ perceptions exists.
 Therefore, we performed a systematic review to examine the influence of
 physician attire on patient perceptions including trust, satisfaction and
 confidence. Setting, participants, interventions and outcomes: We searched
 MEDLINE, Embase, Biosis Previews and Conference Papers Index. Studies
 that: (1) involved participants ≥18 years of age; (2) evaluated physician
 attire; and (3) reported patient perceptions related to attire were
 included. Two authors determined study eligibility. Studies were
 categorised by country of origin, clinical discipline (eg, internal
 medicine, surgery), context (inpatient vs outpatient) and occurrence of a
 clinical encounter when soliciting opinions regarding attire. Studies were
 assessed using the Downs and Black Scale risk of bias scale. Owing to
 clinical and methodological heterogeneity, meta-analyses were not
 attempted. Results: Of 1040 citations, 30 studies involving 11 533
 patients met eligibility criteria. Included studies featured patients from
 14 countries. General medicine, procedural (eg, general surgery and
 obstetrics), clinic, emergency departments and hospital settings were
 represented. Preferences or positive influence of physician attire on
 patient perceptions were reported in 21 of the 30 studies (70%). Formal
 attire and white coats with other attire not specified was preferred in 18
 of 30 studies (60%). Preference for formal attire and white coats was more
 prevalent among older patients and studies conducted in Europe and Asia.
 Four of seven studies involving procedural specialties reported either no
 preference for attire or a preference for scrubs; four of five studies in
 intensive care and emergency settings also found no attire preference.
 Only 3 of 12 studies that surveyed patients after a clinical encounter
 concluded that attire influenced patient perceptions. Conclusions:
 Although patients often prefer formal physician attire, perceptions of
 attire are influenced by age, locale, setting and context of care.
 Policy-based interventions that target such factors appear necessary.
description: PHYSICIAN ATTIRE DATA
 ABSTRACTION FILE (EXCEL)The "Raw Excel
 Table 1" tab is where we input the abstracted data from each included
 study in our systematic review including Author name (for reference),
 Study Design, Region, Clinical Setting (Context), Patient Characteristics
 (Number, Age, Gender, Education Level, D&B Score, Attire Compared,
 Whether a physician wearing a white coat was specified, Whether or not
 study followed a clinical encounter, Perceptions/Preferences Measured,
 Influence/Preference Expressed for each study and reviewer comments on
 each study. Each pivot table corresponds to figures that are associated
 with the study.FINAL DATA
 FILE.xlsx
DOI: 10.5061/dryad.q666v01
title: Data from: A re‐interpretation of the ambulacral system of Eumorphocystis (Blastozoa, Echinodermata) and its bearing on the evolution of early crinoids

description: Recent debates over the evolutionary relationships of early echinoderms
 have relied heavily on morphological evidence from the feeding ambulacral
 system. Eumorphocystis, a Late Ordovician diploporitan, has been a focus
 in these debates because it bears ambulacral features that show strong
 morphological similarity to early crinoid arms. Undescribed and
 well‐preserved specimens of Eumorphocystis from the Bromide Formation
 (Oklahoma, USA) provide new data illustrating that composite arms
 supported by a radial plate that bear a triserial arrangement of axial and
 extraxial components encasing a coelomic extension can also be found in
 blastozoans. Previous reports have considered these arm structures to be
 restricted to crinoids; these combined features have not been previously
 observed in blastozoan echinoderms. Phylogenetic analyses suggest that
 Eumorphocystis and crinoids are sister taxa and that shared derived
 features of these taxa are homologous. The evidence from the arms of
 Eumorphocystis suggests that crinoid arms were derived from a specialized
 blastozoan ambulacral system that lost feeding brachioles and strongly
 suggests that crinoids are nested within blastozoans.
description: Nexus file; character
 codingsNEXUS file for analysis;
 includes character codings for all taxa and the coding for the constraint
 analysisSheffieldSumrall_Eumorphocystis_Nexus.nexTempleton TestCode for templeton test (parsimony)SheffieldSumrall_Eumorphocystis_Templeton.nexKishino-Hasegawa test code (ML)Code performed for the Kishino-Hasegawa test in PAUP* for ML analysisSheffield_Sumrall_Eumorphocystis_ML_KHTest.nexExplanation of CharactersExplanation of characters and codings used in the analysisSupplementaryI_SheffieldSumrall.docx
DOI: 10.5061/dryad.9b65b
title: Data from: Localization of QTL for diapause and other photoperiodically regulated life-history traits important in adaptation to seasonally varying environments

description: Seasonally changing environments at high latitudes present great
 challenges for the reproduction and survival of insects, and photoperiodic
 cues play an important role in helping them to synchronize their life
 cycle with prevalent and forthcoming conditions. We have mapped
 quantitative trait loci (QTL) responsible for the photoperiodic regulation
 of four life history traits, female reproductive diapause, cold tolerance,
 egg-to-eclosion development time and juvenile body weight in Drosophila
 montana strains from different latitudes in Canada and Finland. The F2
 progeny of the cross was reared under a single photoperiod (LD cycle
 16:8), which the flies from the Canadian population interpret as early
 summer and the flies from the Finnish population as late summer. The
 analysis revealed a unique QTL for diapause induction on the X chromosome
 and several QTL for this and the other measured traits on the 4th
 chromosome. Flies’ cold tolerance, egg-to-eclosion development time and
 juvenile body weight had several QTL also on the 2nd, 3rd and 5th
 chromosome, some of the peaks overlapping with each other. These results
 suggest that while the downstream output of females’ photoperiodic
 diapause response is partly under a different genetic control from that of
 the other traits in the given day length, all traits also share some QTL,
 possibly involving genes with pleiotropic effects and/or multiple tightly
 linked genes. Nonoverlapping QTL detected for some of the traits also
 suggest that the traits are potentially capable of independent evolution,
 even though this may be restricted by epistatic interactions and/or
 correlations and trade-offs between the traits.
description: Input data file for QTL
 mappinggenotypes&phenotypes.csv
DOI: 10.5061/dryad.h3p550p
title: Data from: Maiden voyage into death: are fisheries affecting seabird juvenile survival during the first days at sea?

description: The study of juvenile migration behavior of seabird species has been
 limited so far by the inability to track their movements during long time
 periods. Foraging and flying skills of young individuals are assumed to be
 inferior to those of adults, making them more vulnerable during
 long-distance migrations. In addition to natural oceanographic effects and
 intrinsic conditions, incidental seabird harvest by human fisheries is one
 of the main causes for worldwide seabird population declines, and it has
 been hypothesized that juveniles are particularly vulnerable to bycatch
 during their first weeks at sea after leaving the nest. We used solar
 powered satellite tags to track the at sea movements of adults and
 juveniles of Scopoli’s shearwater (Calonectris diomedea) after the autumn
 departure from their breeding colony in Chafarinas Islands (southwestern
 Mediterranean Sea). Eighty percent of juvenile tags stopped transmitting
 during the first week at sea, within 50 km of their natal colony, in an
 area with one of the highest concentrations of fishing activities in the
 Mediterranean Sea. All adult birds tagged and only twenty per cent of
 juveniles migrated into the Atlantic and southwards along the coast of
 West Africa. The two age groups showed different habitat preferences, with
 juveniles travelling farther from the coast, in windier and less
 productive waters than adults. We conclude that Scopoli’s shearwater
 juveniles are particularly vulnerable to mortality events, and we
 highlight that fisheries, along with differential age-related behavior
 skills between adults and juveniles, are likely causes of this mortality.
 Overall, our study highlights the importance of conducting tracking
 studies during the first stages of juvenile migration.
description: Satellite telemetry
 dataSatellite telemetry
 locations of Calonectris diomedeadata.xlsx
DOI: 10.5061/dryad.n5j54
title: Data from: A gene for genetic background in Zea mays: fine-mapping enhancer of teosinte branched1.2 to a YABBY class transcription factor

description: The effects of an allelic substitution at a gene often depend critically
 on genetic background, i.e., the genotypes at other genes in the genome.
 During the domestication of maize from its wild ancestor (teosinte), an
 allelic substitution at teosinte branched (tb1) caused changes in both
 plant and ear architecture. The effects of tb1 on phenotype were shown to
 depend on multiple background loci, including one called enhancer of tb1.2
 (etb1.2). We mapped etb1.2 to a YABBY class transcription factor
 (ZmYAB2.1) and showed that the maize alleles of ZmYAB2.1 are either
 expressed at a lower level than teosinte alleles or disrupted by
 insertions in the sequences. tb1 and etb1.2 interact epistatically to
 control the length of internodes within the maize ear, which affects how
 densely the kernels are packed on the ear. The interaction effect is also
 observed at the level of gene expression, with tb1 acting as a repressor
 of ZmYAB2.1 expression. Curiously, ZmYAB2.1 was previously identified as a
 candidate gene for another domestication trait in maize, nonshattering
 ears. Consistent with this proposed role, ZmYAB2.1 is expressed in a
 narrow band of cells in immature ears that appears to represent a
 vestigial abscission (shattering) zone. Expression in this band of cells
 may also underlie the effect on internode elongation. The identification
 of ZmYAB2.1 as a background factor interacting with tb1 is a first step
 toward a gene-level understanding of how tb1 and the background within
 which it works evolved in concert during maize domestication.
description: Finemapping Genotype and
 PhenotypeGenotype and phenotype
 data from 45 RC-NILs and 2 NI-RILs used in fine-mapping
 etb1.2Interaction Phenotype
 and ExpressionPhenotype and expression
 data from 20 NI-RILs used for testing interactions between ZmYAB2.1 and
 tb1ZmYAB2.1
 ExpressionExpression data for
 ZmYAB2.1
DOI: 10.5061/dryad.7k8q7
title: Data from: Early reproductive success in Drosophila males is dependent on maturity of the accessory gland

description: In a number of insect taxa, male sexual maturity is not always directly
 attained at adult eclosion. Sexual maturity is often defined behaviorally
 as mating success, or physiologically as the point when gametes are
 produced. Here, we show that the sexual maturation process in males is
 more complex than previously described and that a measure of maturity also
 needs to include post-mating traits. In many species mating success is
 tightly linked with size of the accessory gland (AG). The AG is the
 production site of a complex cocktail of proteins that are transferred to
 the female along with the sperm, and which impact on important functions
 for male reproductive success. Using Drosophila melanogaster we conducted
 comprehensive behavioral assays of several aspects of male reproductive
 fitness and demonstrated that the AG has to attain full maturity for males
 to reach full reproductive competence. We tested males from shortly after,
 and up to 6 days, post adult eclosion, and considered both pre- and
 post-copulatory traits. Young males are less likely to gain a mating and
 show significantly less courtship behavior. Young males that managed to
 obtain a mating however were inferior in many post-copulatory traits like
 sperm competitiveness and effectiveness in suppressing female remating. We
 monitored male AG development over the first 6 days after eclosion and
 found it to significantly increase in size over the entire period.
description: Data: Early reprod
 success in D. m. males is dependent on maturity of the accessory
 glandRaw data of all
 behavioral experiments and size measurements of the accessory gland
 described in the manuscript ("Early reproductive success in
 Drosophila males is dependent on maturity of the accessory gland", by
 H. Ruhmann, K. U. Wensing, N. J.-H. and Dr. C. FrickeData_Early_reprod_success_in_Dm_ males_dependent_on_maturity_of_the_AG_Dryad.xlsx