cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16780552.v1
title: Processed_QC_approved_normalised_expr_GSE30521

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE30521 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30521) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.25345/c5fx73z3r
title: MassIVE Reanalysis RMSV000000354.2832 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SERINC2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.16780558.v2
title: Processed_QC_approved_normalised_expr_GSE17951

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE17951 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780558
title: Processed_QC_approved_normalised_expr_GSE17951

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE17951 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780558.v1
title: Processed_QC_approved_normalised_expr_GSE17951

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE17951 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE17951) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.6084/m9.figshare.16780567
title: Processed_QC_approved_normalised_expr_E-MEXP-1243

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset E-MEXP-1243 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780567.v2
title: Processed_QC_approved_normalised_expr_E-MEXP-1243

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset E-MEXP-1243 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780567.v1
title: Processed_QC_approved_normalised_expr_E-MEXP-1243

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset E-MEXP-1243 (https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-1243) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.6084/m9.figshare.16780573
title: Processed_QC_approved_normalised_expr_GSE55945

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE55945 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780573.v2
title: Processed_QC_approved_normalised_expr_GSE55945

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE55945 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780573.v1
title: Processed_QC_approved_normalised_expr_GSE55945

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE55945 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE55945) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.6084/m9.figshare.16780579.v2
title: Processed_QC_approved_normalised_expr_GSE3325

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE3325 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780579
title: Processed_QC_approved_normalised_expr_GSE3325

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE3325 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780579.v1
title: Processed_QC_approved_normalised_expr_GSE3325

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE3325 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE3325) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.6084/m9.figshare.16780582
title: Processed_QC_approved_normalised_expr_GSE45016

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE45016 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780582.v2
title: Processed_QC_approved_normalised_expr_GSE45016

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE45016 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780582.v1
title: Processed_QC_approved_normalised_expr_GSE45016

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE45016 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45016) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.6084/m9.figshare.16780588
title: Processed_QC_approved_normalised_expr_E-TABM-26

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset E-TABM-26 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780588.v2
title: Processed_QC_approved_normalised_expr_E-TABM-26

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset E-TABM-26 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780588.v1
title: Processed_QC_approved_normalised_expr_E-TABM-26

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset E-TABM-26 (https://www.ebi.ac.uk/arrayexpress/experiments/E-TABM-26) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.6084/m9.figshare.16780600
title: Processed_QC_approved_normalised_expr_GSE8218

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE8218 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780600.v2
title: Processed_QC_approved_normalised_expr_GSE8218

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE8218 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780600.v1
title: Processed_QC_approved_normalised_expr_GSE8218

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE8218 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE8218) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.6084/m9.figshare.16780615
title: Processed_QC_approved_normalised_expr_GSE6919_Av2

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE6919 (Affymetrix Human Genome U95Av2) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780615.v2
title: Processed_QC_approved_normalised_expr_GSE6919_Av2

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE6919 (Affymetrix Human Genome U95Av2) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780615.v1
title: Processed_QC_approved_normalised_expr_GSE6919_Av2

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE6919 (Affymetrix Human Genome U95Av2) (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6919) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.25345/c5b853j2n
title: MassIVE Reanalysis RMSV000000354.2835 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, KIAA0247 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.16780627
title: Processed_QC_approved_normalised_expr_GSE6919_B

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE6919 (Affymetrix Human Genome U95B) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780627.v2
title: Processed_QC_approved_normalised_expr_GSE6919_B

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE6919 (Affymetrix Human Genome U95B) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780627.v1
title: Processed_QC_approved_normalised_expr_GSE6919_B

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE6919 (Affymetrix Human Genome U95B) (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6919) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.25345/c56h4cq9c
title: MassIVE Reanalysis RMSV000000354.2836 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PITHD1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.16780636
title: Processed_QC_approved_normalised_expr_GSE6919_C

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE6919 (Affymetrix Human Genome U95C) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780636.v2
title: Processed_QC_approved_normalised_expr_GSE6919_C

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE6919 (Affymetrix Human Genome U95C) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780636.v1
title: Processed_QC_approved_normalised_expr_GSE6919_C

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE6919 (Affymetrix Human Genome U95C) (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6919) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.6084/m9.figshare.16780642.v2
title: Processed_QC_approved_normalised_expr_BI-GDAC

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset BI-GDAC used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780642
title: Processed_QC_approved_normalised_expr_BI-GDAC

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset BI-GDAC used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780642.v1
title: Processed_QC_approved_normalised_expr_BI-GDAC

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset BI-GDAC (http://portals.broadinstitute.org/cgi-bin/cancer/publications/view/75) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.6084/m9.figshare.16780786
title: Processed_QC_approved_normalised_expr_GSE1431

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE1431 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780786.v2
title: Processed_QC_approved_normalised_expr_GSE1431

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE1431 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780786.v1
title: Processed_QC_approved_normalised_expr_GSE1431

description: Processed, QC-approved and normalised (gcrma, GcRmaBackgroundCorrection) expression data from dataset GSE1431 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE1431) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.6084/m9.figshare.16780792
title: Processed_QC_approved_normalised_expr_GSE32571

description: Processed, QC-approved and normalised (RSN) expression data from dataset GSE32571 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780792.v2
title: Processed_QC_approved_normalised_expr_GSE32571

description: Processed, QC-approved and normalised (RSN) expression data from dataset GSE32571 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780792.v1
title: Processed_QC_approved_normalised_expr_GSE32571

description: Processed, QC-approved and normalised (RSN) expression data from dataset GSE32571 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32571) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.6084/m9.figshare.16780987
title: Processed_QC_approved_normalised_expr_TCGA-PRAD

description: Processed (sequencing reads aligned to the GRCh37 reference genome with TopHat using Bowtie), QC-approved (FastQC and htseq-qa), annotated (Htseq-count) and normalised expression data from TCGA-PRAD project (https://portal.gdc.cancer.gov/repository?filters={"op":"and","content":[{"content":{"field":"cases.primary_site","value":["prostate gland"]},"op":"in"},{"content":{"field":"cases.project.program.name","value":["TCGA"]},"op":"in"},{"content":{"field":"cases.project.project_id","value":["TCGA-PRAD"]},"op":"in"},{"op":"in","content":{"field":"files.data_format","value":["bam"]}},{"content":{"field":"files.experimental_strategy","value":["RNA-Seq"]},"op":"in"},{"op":"in","content":{"field":"files.platform","value":["illumina"]}}]}) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16780987.v2
title: Processed_QC_approved_normalised_expr_TCGA-PRAD

description: Processed (sequencing reads aligned to the GRCh37 reference genome with TopHat using Bowtie), QC-approved (FastQC and htseq-qa), annotated (Htseq-count) and normalised expression data from TCGA-PRAD project (https://portal.gdc.cancer.gov/repository?filters={"op":"and","content":[{"content":{"field":"cases.primary_site","value":["prostate gland"]},"op":"in"},{"content":{"field":"cases.project.program.name","value":["TCGA"]},"op":"in"},{"content":{"field":"cases.project.project_id","value":["TCGA-PRAD"]},"op":"in"},{"op":"in","content":{"field":"files.data_format","value":["bam"]}},{"content":{"field":"files.experimental_strategy","value":["RNA-Seq"]},"op":"in"},{"op":"in","content":{"field":"files.platform","value":["illumina"]}}]}) used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.
DOI: 10.6084/m9.figshare.16781008
title: Processed_QC_approved_normalised_expr_ICGC-PCA

description: Processed (sequencing reads aligned to the GRCh37 reference genome with TopHat using Bowtie), QC-approved (FastQC and htseq-qa), annotated (Htseq-count) and normalised expression data from ICGC-PCA project used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.6084/m9.figshare.16781008.v2
title: Processed_QC_approved_normalised_expr_ICGC-PCA

description: Processed (sequencing reads aligned to the GRCh37 reference genome with TopHat using Bowtie), QC-approved (FastQC and htseq-qa), annotated (Htseq-count) and normalised expression data from ICGC-PCA project used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study (https://pubmed.ncbi.nlm.nih.gov/33477882/).
DOI: 10.25345/c52r3nx4r
title: MassIVE Reanalysis RMSV000000354.2838 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, LPAR2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.16586003
title: Landscape features and caribou harvesting during three decades in Newfoundland

description: Landscapes can influence the distribution of harvesting by influencing animal distribution and hunter access. For species like caribou, <i>Rangifer tarandus</i>, decades-long shifts in abundance and distribution might alter such relationships, but few studies have been conducted at such scales. We examined relationships between landscape features and 21,380 harvest records of migratory caribou in Newfoundland during caribou population growth (1980s), cessation of growth (1990s), and decline (2000s). We focused on features hypothesized to influence the distributions of caribou and hunters: lichen landcover, roads, cutblocks, outfitter camps, power lines, and towns. We uncovered larger harvests by resident hunters of male and female caribou among lichen landcover, likely providing preferred caribou forage, and larger harvests by non-resident hunters of male caribou away from towns, reflecting the locations of outfitter camps. Only during later decades, resident harvests occurred nearer power lines and cutblocks, likely providing hunter access and reflecting risk-prone foraging by caribou. We surmise that the harvest was facilitated by open habitats, preferred by caribou, and anthropogenic features leading to hunter access, especially as the caribou population declined. Such knowledge at broad scales is increasingly important in an era of widespread disruption to landscapes.
DOI: 10.6084/m9.figshare.16781008.v1
title: Processed_QC_approved_normalised_expr_ICGC-PCA

description: Processed (sequencing reads aligned to the GRCh37 reference genome with TopHat using Bowtie), QC-approved (FastQC and htseq-qa), annotated (Htseq-count) and normalised expression data from ICGC-PCA project (https://ega-archive.org/datasets/EGAD00001000305 used in "The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis" study.