cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6104534.v1
title: Ferroelectric domain evolution in gold nanoparticle-modified perovskite barium titanate ceramics by piezoresponse force microscopy

description: This work addresses the domain evolution processes in polycrystalline barium titanate (BaTiO<sub>3</sub>, BT)-based ceramics containing various amounts of gold nanoparticles (AuNPs) as an additive by using piezoresponse force microscopy (PFM). The obtained PFM images of the AuNPs-modified BT ceramics revealing the change of one spontaneously polarized state to another under various applied direct current (DC) voltage are discussed in terms of their domain topology, PFM phase shift and PFM amplitude. In general, complex microstructures containing almost round-shaped and micron-sized grains, and grain boundary regions are clearly seen in the topographic images of all samples. The obtained results point towards possibility of control the polarization switching of the AuNPs-modified BT ceramics with fined-grains sizes, by a selection of the proper applied DC voltage (V<sub>DC</sub>). The PFM investigation confirmed good dipole orientation within the AuNPs-modified BT ceramics containing submicron grain size at the elevated external fields and proved the lack of convenient domain switching of the unmodified BT case resulting from their larger grain size.
DOI: 10.6084/m9.figshare.6104507
title: OTU_community

description: Bacterial Community of Tree Leaves in Temperate Forests
DOI: 10.6084/m9.figshare.6104507.v1
title: OTU_community

description: Bacterial Community of Tree Leaves in Temperate Forests
DOI: 10.6084/m9.figshare.6104198
title: data - Moll et al. 2018 Urban Ecosystems

description: File ending in _1 contains spatial data relating to 104 camera trap stations positioned throughout Cleveland, Ohio, USA. File ending in _2 contains camera trap detections of humans, red foxes, and coyotes from 104 sites throughout Cleveland, Ohio, USA. These data correspond to analysis in the publication:<br>Moll, R. J., J. D. Cepek, P. D. Lorch, P. M. Dennis, T. Robison, J. J. Millspaugh, and R. A. Montgomery. Humans and urban development mediate the sympatry of competing carnivores. Urban Ecosystems.<br><br><br>
DOI: 10.6084/m9.figshare.6103844
title: CTCF of pCYCD6:GUS-GFP in seu3 and wox5-1 mutants

description: Images used to calculate Corrected Total Cell Fluorescence (CTCF) of pCYCD6:GUS-GFP in seu3 and wox5-1 mutants
DOI: 10.6084/m9.figshare.6103844.v1
title: CTCF of pCYCD6:GUS-GFP in seu3 and wox5-1 mutants

description: Images used to calculate Corrected Total Cell Fluorescence (CTCF) of pCYCD6:GUS-GFP in seu3 and wox5-1 mutants
DOI: 10.6084/m9.figshare.6103754
title: CTCF of SHR:SHR-GFP and SCR:SCR-GFP in BL treated plants

description: Images used to calculate Corrected Total Cell Fluorescence (CTCF) of SHR:SHR-GFP and SCR:SCR-GFP in roots treated and not treated with brassinolides (BL)
DOI: 10.6084/m9.figshare.6103754.v1
title: CTCF of SHR:SHR-GFP and SCR:SCR-GFP in BL treated plants

description: Images used to calculate Corrected Total Cell Fluorescence (CTCF) of SHR:SHR-GFP and SCR:SCR-GFP in roots treated and not treated with brassinolides (BL)
DOI: 10.6084/m9.figshare.6102662
title: SHR:SHR-GFP, SCR:SCR-mCherry in BL treated plants

description: Images used to calculate SHR-SCR complex formation in BL treated plants.
DOI: 10.6084/m9.figshare.6102662.v1
title: SHR:SHR-GFP, SCR:SCR-mCherry in BL treated plants

description: Images used to calculate SHR-SCR complex formation in BL treated plants.
DOI: 10.6084/m9.figshare.6100565
title: QC divisions in BL treated roots

description: QC divisions in roots treated or not treated with brassinolides (BL) at 5 and 6 days old.
DOI: 10.6084/m9.figshare.6100565.v1
title: QC divisions in BL treated roots

description: QC divisions in roots treated or not treated with brassinolides (BL) at 5 and 6 days old.
DOI: 10.6084/m9.figshare.6100346
title: pCYCD6:GUS-GFP expression at 4, 5, and 6 days

description: Expression of pCYCD6:GUS-GFP in 4, 5, and 6 day old roots.
DOI: 10.6084/m9.figshare.6100346.v1
title: pCYCD6:GUS-GFP expression at 4, 5, and 6 days

description: Expression of pCYCD6:GUS-GFP in 4, 5, and 6 day old roots.
DOI: 10.6084/m9.figshare.6100340
title: Functional data

description: Functional data, as a .csv.<br> arb - an arbritary sorting vector<br> layout - location vector placing each microcosm in a 96-well plate<br> Community - identifier of the community (See supplementary)<br> Replicate - the replicate (1-4)<br> mgCO2.7 - the weight of CO2 produced by the microcosm over 7 days<br> CPM7 - counts per ml of each microcosm over 7 days<br> pgRPC.7 - mgCO2.7/CPM.7<br> ATP7 - the ATP produced after 7 days<br> mG7 - nM beta-glucosidase activity per hour after 7 days incubation<br> mN7 - nM beta-N-acetyl-D-glucosidase activity per hour after 7 days incubation <br> mX7 - nM xyloxidase activity per hour after 7 days incubation mP7 - nM phosphatase activity per hour after 7 days incubation
DOI: 10.6084/m9.figshare.6100301
title: Supplementary Table S1 from Pluripotent stem cells: induction and self-renewal

description: List of 2452 genes expressed exclusively in the ICM, 664 exclusively in the naïve state and 52 genes expressed in both.
DOI: 10.6084/m9.figshare.6100301.v1
title: Supplementary Table S1 from Pluripotent stem cells: induction and self-renewal

description: List of 2452 genes expressed exclusively in the ICM, 664 exclusively in the naïve state and 52 genes expressed in both.
DOI: 10.6084/m9.figshare.6100295
title: Supplementary Table S2 from Pluripotent stem cells: induction and self-renewal

description: Gene ontologies (GOs) over-represented in the gene signature defining the naïve state. Analysis was performed using the R package GOstats [94]. GO Terms are sorted by GO type Biological Process (BP), Cellular Component (CC) and Molecular Function (MF) and within these types they are sorted by p-value of the hypergeometric test.
DOI: 10.6084/m9.figshare.6100295.v1
title: Supplementary Table S2 from Pluripotent stem cells: induction and self-renewal

description: Gene ontologies (GOs) over-represented in the gene signature defining the naïve state. Analysis was performed using the R package GOstats [94]. GO Terms are sorted by GO type Biological Process (BP), Cellular Component (CC) and Molecular Function (MF) and within these types they are sorted by p-value of the hypergeometric test.
DOI: 10.6084/m9.figshare.6100190
title: ISWC TPF Profiler Study Data

description: Result of the Studies conducted using the TPF Profiler to assess the performance of TPF servers.
DOI: 10.6084/m9.figshare.6100190.v1
title: ISWC TPF Profiler Study Data

description: Result of the Studies conducted using the TPF Profiler to assess the performance of TPF servers.
DOI: 10.6084/m9.figshare.6100190.v2
title: ISWC TPF Profiler Study Data

description: Result of the Studies conducted using the TPF Profiler to assess the performance of TPF servers.
DOI: 10.6084/m9.figshare.6100190.v4
title: ISWC TPF Profiler Study Data

description: Result of the Studies conducted using the TPF Profiler to assess the performance of TPF servers.
DOI: 10.6084/m9.figshare.6100184
title: WOX5:WOX5-GFP, 35S:GFP, TMO5:3xGFP line scans

description: Line scans used to measure WOX5:WOX5-GFP movement from QC to vasculature.
DOI: 10.6084/m9.figshare.6100184.v1
title: WOX5:WOX5-GFP, 35S:GFP, TMO5:3xGFP line scans

description: Line scans used to measure WOX5:WOX5-GFP movement from QC to vasculature.
DOI: 10.6084/m9.figshare.6100130
title: SHR:SHR-GFP, SCR:SCR-mCherry in QC and CEI

description: Images used for Number and Brightness analysis on SHR and SCR complex formation in the CEI and QC
DOI: 10.6084/m9.figshare.6100130.v1
title: SHR:SHR-GFP, SCR:SCR-mCherry in QC and CEI

description: Images used for Number and Brightness analysis on SHR and SCR complex formation in the CEI and QC
DOI: 10.6084/m9.figshare.6100004
title: Landscape genomic conservation assessment of a narrow-endemic and a widespread morning glory from Amazonian savannas

description: Genotype and sequence data for two morning glories (Convolvulaceae): Ipomoea cavalcantei and Ipomoea maurandioides. For each species we provide genotypes in Variant Call Format and sequences in FASTA format.<br>The data belongs to the following accepted manuscript:<br>Lanes ECM, Pope NS, Alves R, Carvalho NM, Giannini TC, Giulietti AM, Imperatriz-Fonseca VL, Monteiro W, Oliveira GC, Silva AR, Siqueira JO, Souza-Filho PMW, Vasconcelos S, Jaffé R (2018) Landscape genomic conservation assessment of a narrow-endemic and a widespread morning glory from Amazonian savannas. Frontiers in Plant Sciences. doi: 10.3389/fpls.2018.00532
DOI: 10.6084/m9.figshare.6099947
title: Efficient dummy generation for considering obstacles and protecting user location

description: This is a file that was uploaded for paper review.
DOI: 10.6084/m9.figshare.6099947.v1
title: Efficient dummy generation for considering obstacles and protecting user location

description: This is a file that was uploaded for paper review.
DOI: 10.6084/m9.figshare.6099947.v2
title: Efficient dummy generation for considering obstacles and protecting user location

description: This is a file that was uploaded for paper review.
DOI: 10.6084/m9.figshare.6099947.v3
title: Efficient dummy generation for considering obstacles and protecting user location

description: This is a file that was uploaded for paper review.
DOI: 10.6084/m9.figshare.6099944
title: Dataset to generate figures and do stats for Metzen et al. (2018). Descending pathways generate perception of and neural responses to weak sensory input. PLoS Biol 16(6): e2005239.

description: Dataset to compute box plots and statistics as well as to generate the figures for the study:<br>Metzen MG, Huang CG, Chacron MJ (2018) Descending pathways generate perception of and neural responses to weak sensory input. PLoS Biol 16(6): e2005239. https://doi.org/10.1371/journal.pbio.2005239<br><br>Please read ReadMe.txt for further descriptions and explanation and extract the zip file.<br>
DOI: 10.6084/m9.figshare.6099944.v2
title: Dataset to generate figures and do stats for Metzen et al. (2018). Descending pathways generate perception of and neural responses to weak sensory input. PLoS Biol 16(6): e2005239.

description: Dataset to compute box plots and statistics as well as to generate the figures for the study:<br>Metzen MG, Huang CG, Chacron MJ (2018) Descending pathways generate perception of and neural responses to weak sensory input. PLoS Biol 16(6): e2005239. https://doi.org/10.1371/journal.pbio.2005239<br><br>Please read ReadMe.txt for further descriptions and explanation and extract the zip file.<br>
DOI: 10.6084/m9.figshare.6099944.v1
title: Dataset to generate figures and do stats

description: Dataset to compute box plots and statistics as well as to generate the figures. Please read ReadMe.txt for further descriptions and explanation and extract the zip file.
DOI: 10.6084/m9.figshare.6099845
title: first.txt

description: Ceci est un premier test de l'application<br>
DOI: 10.6084/m9.figshare.6099845.v1
title: first.txt

description: Ceci est un premier test de l'application<br>
DOI: 10.6084/m9.figshare.6099644
title: Changes in the retreatment radiation tolerance of the spinal cord with time after the initial treatment

description: <b>Purpose:</b> To estimate, from experimental data, the retreatment radiation ‘tolerances’ of the spinal cord at different times after initial treatment. <b>Materials and methods:</b> A model was developed to show the relationship between the biological effective doses (BEDs) for two separate courses of treatment with the BED of each course being expressed as a percentage of the designated ‘retreatment tolerance’ BED value, denoted and . The primate data of Ang et al. (2001) were used to determine the fitted parameters. However, based on rodent data, recovery was assumed to commence 70 days after the first course was complete, and with a non-linear relationship to the magnitude of the initial BED (<i>BED<sub>init</sub></i>). <b>Results:</b> The model, taking into account the above processes, provides estimates of the retreatment tolerance dose after different times. Extrapolations from the experimental data can provide conservative estimates for the clinic, with a lower acceptable myelopathy incidence. Care must be taken to convert the predicted value into a formal BED value and then a practical dose fractionation schedule. <b>Conclusions:</b> Used with caution, the proposed model allows estimations of retreatment doses with elapsed times ranging from 70 days up to three years after the initial course of treatment.
DOI: 10.6084/m9.figshare.6099644.v1
title: Changes in the retreatment radiation tolerance of the spinal cord with time after the initial treatment

description: <i>Purpose</i>: To estimate, from experimental data, the retreatment radiation ‘tolerances’ of the spinal cord at different times after initial treatment. <i>Materials and methods</i>: A model was developed to show the relationship between the biological effective doses (BED) for two separate courses of treatment with the BED of each course being expressed as a percentage of the designated ‘retreatment tolerance’ BED value, denoted <i>BED</i><sub>1</sub> and <i>BED</i><sub>2</sub>. The primate data of Ang et al (2001) was used to determine the fitted parameters. However, based on rodent data, recovery was assumed to commence 70 days after the first course was complete, and with a non-linear relationship to the magnitude of the initial BED (<i>BED<sub>init</sub></i>). <i>Results</i>: The model, taking into account the above processes, provides estimates of the retreatment tolerance dose after different times. Extrapolations from the experimental data can provide conservative estimates for the clinic, with a lower acceptable myelopathy incidence. Care must be taken to convert the predicted <i>BED</i><sub>2</sub> value into a formal BED value and then a practical dose fractionation schedule. <i>Conclusions</i>: Used with caution, the proposed model allows estimations of retreatment doses with elapsed times ranging from 70 days up to three years after the initial course of treatment.
DOI: 10.6084/m9.figshare.6099644.v3
title: Changes in the retreatment radiation tolerance of the spinal cord with time after the initial treatment

description: <b>Purpose:</b> To estimate, from experimental data, the retreatment radiation ‘tolerances’ of the spinal cord at different times after initial treatment. <b>Materials and methods:</b> A model was developed to show the relationship between the biological effective doses (BEDs) for two separate courses of treatment with the BED of each course being expressed as a percentage of the designated ‘retreatment tolerance’ BED value, denoted and . The primate data of Ang et al. (2001) were used to determine the fitted parameters. However, based on rodent data, recovery was assumed to commence 70 days after the first course was complete, and with a non-linear relationship to the magnitude of the initial BED (<i>BED<sub>init</sub></i>). <b>Results:</b> The model, taking into account the above processes, provides estimates of the retreatment tolerance dose after different times. Extrapolations from the experimental data can provide conservative estimates for the clinic, with a lower acceptable myelopathy incidence. Care must be taken to convert the predicted value into a formal BED value and then a practical dose fractionation schedule. <b>Conclusions:</b> Used with caution, the proposed model allows estimations of retreatment doses with elapsed times ranging from 70 days up to three years after the initial course of treatment.
DOI: 10.6084/m9.figshare.6099644.v2
title: Changes in the retreatment radiation tolerance of the spinal cord with time after the initial treatment

description: <i>Purpose</i>: To estimate, from experimental data, the retreatment radiation ‘tolerances’ of the spinal cord at different times after initial treatment. <i>Materials and methods</i>: A model was developed to show the relationship between the biological effective doses (BED) for two separate courses of treatment with the BED of each course being expressed as a percentage of the designated ‘retreatment tolerance’ BED value, denoted <i>BED</i><sub>1</sub> and <i>BED</i><sub>2</sub>. The primate data of Ang et al (2001) was used to determine the fitted parameters. However, based on rodent data, recovery was assumed to commence 70 days after the first course was complete, and with a non-linear relationship to the magnitude of the initial BED (<i>BED<sub>init</sub></i>). <i>Results</i>: The model, taking into account the above processes, provides estimates of the retreatment tolerance dose after different times. Extrapolations from the experimental data can provide conservative estimates for the clinic, with a lower acceptable myelopathy incidence. Care must be taken to convert the predicted <i>BED</i><sub>2</sub> value into a formal BED value and then a practical dose fractionation schedule. <i>Conclusions</i>: Used with caution, the proposed model allows estimations of retreatment doses with elapsed times ranging from 70 days up to three years after the initial course of treatment.
DOI: 10.6084/m9.figshare.6099572
title: Overwintering of West Nile virus in a bird community with a communal crow roost

description: Results of the simulations to find the beta_crow_crow value that produces the largest proportion of successful simulations (Figure 2) and results of the simulations across the space of relevant parameters (Figure 3).
DOI: 10.6084/m9.figshare.6099572.v1
title: Overwintering of West Nile virus in a bird community with a communal crow roost

description: Results of the simulations to find the beta_crow_crow value that produces the largest proportion of successful simulations
DOI: 10.6084/m9.figshare.6099572.v2
title: Overwintering of West Nile virus in a bird community with a communal crow roost

description: Results of the simulations to find the beta_crow_crow value that produces the largest proportion of successful simulations (Figure 2) and results of the simulations across the space of relevant parameters (Figure 3).
DOI: 10.6084/m9.figshare.6099563
title: Dataset 2- NYUAD-sequenced genomes and annotations

description: SNAP-predicted coding sequences (*.tr.fa) and proteins (*.aa.fa) for the newly isolated and sequenced phytoplankton species.
DOI: 10.6084/m9.figshare.6099563.v1
title: Supplementary Data 2- NYUAD-sequenced genomes and annotations

description: SNAP-predicted coding sequences (*.tr.fa) and proteins (*.aa.fa) for the newly isolated and sequenced phytoplankton species.
DOI: 10.6084/m9.figshare.6099563.v3
title: Dataset 2- NYUAD-sequenced genomes and annotations

description: SNAP-predicted coding sequences (*.tr.fa) and proteins (*.aa.fa) for the newly isolated and sequenced phytoplankton species.
DOI: 10.6084/m9.figshare.6099563.v2
title: Supplementary Data 2- NYUAD-sequenced genomes and annotations

description: SNAP-predicted coding sequences (*.tr.fa) and proteins (*.aa.fa) for the newly isolated and sequenced phytoplankton species.
DOI: 10.6084/m9.figshare.6099476
title: HydrationSiteAnalysis.zip

description: Hydration Site Analysis of Various Protein-Ligand Complexes
DOI: 10.6084/m9.figshare.6099476.v1
title: HydrationSiteAnalysis.zip

description: Hydration Site Analysis of Various Protein-Ligand Complexes
DOI: 10.6084/m9.figshare.6099464
title: Associations between maternal clinical features and fetal outcomes in pregnancies of mothers with connective tissue diseases

description: <b>Objectives:</b> The purpose of this study is to clarify associations between maternal clinical features and adverse pregnancy outcomes (APOs) in mothers with connective tissue diseases (CTDs). <b>Methods:</b> We retrospectively examined maternal clinical features including backgrounds, autoantibodies, CTD flare-ups, and therapies during pregnancies as well as fetal outcomes in 90 pregnancies (66 mothers) at our hospital from January 2006 to September 2016. <b>Results:</b> Underlying CTDs were SLE (<i>N</i> = 41), MCTD (<i>N</i> = 10), RA (<i>N</i> = 15), SS (<i>N</i> = 10), and others (<i>N</i> = 14). Anti-SS-A antibody was detected in 60.3%, lupus anticoagulant (LAC) was in 11.4%, and anti-cardiolipin-β2glycoprotein1 antibody was in 18.5%. Flare-ups of CTDs occurred in 20 pregnancies (22.2%). Corticosteroids (CS) was administered in 73 pregnancies, immunosuppressants in four, and biologics in one. Among the 85 pregnancies other than five early abortions within 12 weeks of gestational age, 33 cases had APOs while the remaining 52 cases were normal. Although disease duration, MCTD, high dose of CS, flare-ups of CTDs, and positive LAC significantly correlated with APOs by univariate analysis, only MCTD was a significant independent predictor for APOs by multivariate analysis. <b>Conclusion:</b> Disease duration, MCTD, high dose of CS, flare-ups of CTDs, and LAC might be possible predictive risk factors for APOs in pregnancies with CTDs. Of these, MCTD was a significant independent risk factor.
DOI: 10.6084/m9.figshare.6099464.v1
title: Associations between maternal clinical features and fetal outcomes in pregnancies of mothers with connective tissue diseases

description: <b>Objectives:</b> The purpose of this study is to clarify associations between maternal clinical features and adverse pregnancy outcomes (APOs) in mothers with connective tissue diseases (CTDs). <b>Methods:</b> We retrospectively examined maternal clinical features including backgrounds, autoantibodies, CTD flare-ups, and therapies during pregnancies as well as fetal outcomes in 90 pregnancies (66 mothers) at our hospital from January 2006 to September 2016. <b>Results:</b> Underlying CTDs were SLE (<i>N</i> = 41), MCTD (<i>N</i> = 10), RA (<i>N</i> = 15), SS (<i>N</i> = 10), and others (<i>N</i> = 14). Anti-SS-A antibody was detected in 60.3%, lupus anticoagulant (LAC) was in 11.4%, and anti-cardiolipin-β2glycoprotein1 antibody was in 18.5%. Flare-ups of CTDs occurred in 20 pregnancies (22.2%). Corticosteroids (CS) was administered in 73 pregnancies, immunosuppressants in four, and biologics in one. Among the 85 pregnancies other than five early abortions within 12 weeks of gestational age, 33 cases had APOs while the remaining 52 cases were normal. Although disease duration, MCTD, high dose of CS, flare-ups of CTDs, and positive LAC significantly correlated with APOs by univariate analysis, only MCTD was a significant independent predictor for APOs by multivariate analysis. <b>Conclusion:</b> Disease duration, MCTD, high dose of CS, flare-ups of CTDs, and LAC might be possible predictive risk factors for APOs in pregnancies with CTDs. Of these, MCTD was a significant independent risk factor.