cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.p8f7ce
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eumyias indigo ruficrissa (Salvadori, 1879)"
 ]
}

 The dataset includes 38 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169301-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4ccea
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Hylaeamys oniscus (Thomas, 1904)"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064887-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjytjn
title: Occurrence Download

description: A dataset containing 2359 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tamias merriami J.A.Allen, 1889"
 ]
}

 The dataset includes 2359 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031926-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cye9dh
title: Occurrence Download

description: A dataset containing 621113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyanobacteria"
 ]
}

 The dataset includes 621113 records from 1277 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179401-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5rx938
title: Occurrence Download

description: A dataset containing 827 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Diveboard - Scuba diving citizen science observations",
 "TaxonKey is one of (Diplodus vulgaris, Dentex dentex, Dicentrarchus labrax, Diplodus sargus, Diplodus puntazzo, Labrus viridis, Symphodus tinca, Caranx crysos, Sphyraena sphyraena, Scorpaena scrofa, Trachurus trachurus, Conger conger, Sparus aurata, Lichia amia, Scomber, Lithognathus mormyrus, Mugil, Pagellus erythrinus, Zeus faber, Diplodus cervinus, Sarpa salpa, Solea solea, Pomatomus saltatrix)"
 ]
}

 The dataset includes 827 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045365-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/xgm1-d915
title: "Soil Surface Roughness Spring 2008 Casselman Canada"

description: "This is a dataset of soil surface roughness measured using a 1-metre long pin profiler. Measurements were taken on bare agricultural fields near Casselman, Ontario, Canada. Data collection occurred in the Spring of 2008 (April 30-May 23) prior to spring crop emergence."
DOI: 10.15468/dl.xkhd59
title: Occurrence Download

description: A dataset containing 6942 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chelonoidis denticulatus, Podocnemis expansa)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6942 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045366-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/27701
title: Chandra X-ray Observatory ObsId 27701

description: The X-Ray Gas-to-Dust Abundance Ratio of Silicon towards the Galactic Bulge
DOI: 10.15468/dl.2xcpfe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macroclymene monilis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045367-251120083545085/datasets/export for details.
DOI: 10.25345/c5ws8j062
title: MassIVE MSV000100175 - Abundance of the major extracellular protease Jep is stress-responsive in the mouse-adapted Staphylococcus aureus JSNZ - Supernatant fraction
title: The opportunistic pathogen Staphylococcus aureus colonizes a broad spectrum of different hosts and niches. In recent years it was shown that mouse-adapted S. aureus strains are more suitable candidates to investigate S. aureus infections in the in vivo mouse model. One of the most studied mouse-adapted strain is JSNZ. Under control conditions at 37C, JSNZ secrets the highly abundant serine protease Jep (JSNZ extracellular protease), which is located on phi_LabRoddCC88_3. Due to the ability of S. aureus to colonize a broad variety of niches, we opted to investigate Jep expression under several physiological stresses such as different temperatures (37C, 42C and 32C) and limiting conditions (iron and oxygen limitation) on transcript and protein level. In silico predictions and Northern blot revealed a that jep is encoded monocistronic with an approximate transcript length of 900 bp. In the different stress conditions, jep transcript levels increases over time in a temperature-dependent manner. Contrastingly, secreted Jep increases in all conditions over time reaching a plateau in stationary phase. Mass spectrometry analysis proves that Jep is the major protein in JSNZ supernatant making up to 75% not only at 37C but also at 42C and under iron-limitation. The protein level of Jep correlates highly with other secreted proteases of JSNZ. Jep shows a phage-independent regulation. Analysis of co-regulated regulons to Jep and additional in silico analysis revealed SaeR and PurR as potential regulators of jep.
DOI: 10.57687/fk2/z0jmgj/awr5fd
title: [TEASER]EEG_Dataset_03JUN.tab

description: :unav
DOI: 10.57687/fk2/z0jmgj/m5hyb8
title: EmbracePlus_DataDictionary_03JUN.xlsx

description: :unav
DOI: 10.57687/fk2/z0jmgj/bsemof
title: [TEASER]EEG_Dataset_10JUN.tab

description: :unav
DOI: 10.57687/fk2/z0jmgj/6xq8js
title: [TEASER]EmbracePlus_Dataset_03JUN.tab

description: :unav
DOI: 10.57687/fk2/z0jmgj/3d9cbt
title: EEG_DataDictionary_03JUN.xlsx

description: :unav
DOI: 10.57687/fk2/z0jmgj/iax1vc
title: EEG_Dataset_Dictionary_10JUN.xlsx

description: :unav
DOI: 10.57687/fk2/z0jmgj/4mw3tl
title: [TEASER]EmbracePlus_Dataset_10JUN.tab

description: :unav
DOI: 10.15468/dl.h3a9ma
title: Occurrence Download

description: A dataset containing 136970 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amelanchier ovalis"
 ]
}

 The dataset includes 136970 records from 691 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045333-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57687/fk2/z0jmgj/n4x6ev
title: EmbracePlus_Dataset_Dictionary_10JUN.xlsx

description: :unav
DOI: 10.15468/dl.kwz8gy
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anchoa cayorum"
 ]
}

 The dataset includes 193 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045369-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbneaq
title: Occurrence Download

description: A dataset containing 20277 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equus quagga",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 20277 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045368-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8x3wh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polycirrus decipiens",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045371-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k436ma
title: Occurrence Download

description: A dataset containing 3507 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ensatina eschscholtzii",
 "Year 2013-2019"
 ]
}

 The dataset includes 3507 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045372-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cv589t
title: Occurrence Download

description: A dataset containing 1521 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equus zebra",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 1521 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045374-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxkhq9
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polycirrus coccineus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045375-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sudwqw
title: Occurrence Download

description: A dataset containing 17575900 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-74.56051 40.19992,-73.79862 40.19992,-73.79862 40.86251,-74.56051 40.86251,-74.56051 40.19992))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 17575900 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045348-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hnnwv
title: Occurrence Download

description: A dataset containing 457 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equus kiang",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 457 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045377-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nyg53y
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eulaeospira orientalis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045378-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p94p4wxx
title: Geospatial Dataset of Coastal Inundation Maps for Long Island, NY and Long Island Sound (CT/NY)

description: This data release contains shapefiles and raster data of spatially distributed water level inundation, water depth, wave discharge and a set of hazard ranks for water levels, waves, and a combination of both for coastal areas of Long Island, NY and Long Island Sound. Water inundation and depth data include both current and future projections of inundation based on 4 annual exceedance probabilities (0.01, 0.04, 0.1, and 0.99). The wave discharge data is calculated for current conditions only. Future flood-inundation data are based on sea-level-rise model scenarios from the GTSM model (Copernicus Climate Change Service, 2022a, 2022b, and Muis et al 2020). Read the README.txt file for a description of file contents.  Additional information supporting this data release is available in the associated manuscript Cook and Herdman (2025).
DOI: 10.60656/d2ffd4d503a74949
title: Custom collection of classification, and MWR single pointing data from Payerne between 1 Jan and 1 Jun 2025
DOI: 10.15468/dl.jhdgk4
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anchoa choerostoma"
 ]
}

 The dataset includes 105 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045379-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14095891
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.umv3x9
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equus africanus",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 132 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045380-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.49fjjt
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neodexiospira foraminosa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 28 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045381-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17883435
title: AI Integrated Ethical Framework (QUIZ) for Education

description: Data sets for AI Integrated Ethical Framework (QUIZ) for Education
DOI: 10.5281/zenodo.17883434
title: AI Integrated Ethical Framework (QUIZ) for Education

description: Data sets for AI Integrated Ethical Framework (QUIZ) for Education
DOI: 10.5281/zenodo.17884104
title: Data for QUIDSS

description: Test data with the required format to run in QUIDSS:



Supply Data.csv: test data used to run QUIDSS

Supply Data_Comp.csv: company-based data to run QUIDSS
DOI: 10.5281/zenodo.17884103
title: Data for QUIDSS

description: Test data with the required format to run in QUIDSS:



Supply Data.csv: test data used to run QUIDSS

Supply Data_Comp.csv: company-based data to run QUIDSS
DOI: 10.15468/dl.v69qfb
title: Occurrence Download

description: A dataset containing 79259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "Geometry POLYGON((-116.66822 31.69354,-116.60208 31.69354,-116.60208 31.7852,-116.66822 31.7852,-116.66822 31.69354))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EX, EW, CR, EN, VU, NT, LC, DD, NE)",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (e2e717bf-551a-4917-bdc9-4fa0f342c530, 28eb1a3f-1c15-4a95-931a-4af90ecb574d)"
 ]
}

 The dataset includes 79259 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045354-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17879356
title: Data and codes for "Giant atom with disorders: Effects from imperfect couplings"

description: All the data and codes for reproducing the results in the paper ''Giant atom with disorders: Effects from imperfect couplings'', including the plots of Figs. 3-6 in the main text.
DOI: 10.15468/dl.84p83f
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anchoa colonensis"
 ]
}

 The dataset includes 125 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045383-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/sxx9-2127
title: "Soil Surface Roughness Fall 2009 Casselman Canada"

description: "This is a dataset of soil surface roughness measured using a 1-metre long pin profiler. Measurements were taken on bare agricultural fields near Casselman, Ontario, Canada. Data collection occurred in the Fall of 2009 (September 18-November 8) after fall harvest."
DOI: 10.15468/dl.245e82
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anomalorbis manuatus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045384-251120083545085/datasets/export for details.
DOI: 10.5281/zenodo.17871605
title: SetkaFluo Demo Dataset and Training Inputs for Noise2Noise Denoising of Multi-Element XRF Maps

description: SetkaFluo is a self-supervised deep-learning workflow for denoising multi-element X-ray fluorescence (XRF) detector maps using Noise2Noise training.

This Zenodo deposit provides the example datasets and training inputs required to run all Jupyter notebooks distributed in the SetkaFluo GitHub repository.

Reference:Shishkov R, Laugros A, Vigano N, Bohic S, Karpov D, Cloetens P.Self-Supervised Deep-Learning Denoising for X-Ray Fluorescence Microscopy with Multi-Element Detectors.ChemRxiv (2025). DOI: 10.26434/chemrxiv-2025-lsxpc

Dataset Contents



input_data.zip – example fitted XRF maps and detector-element images for data exploration and inference.

training.zip – detector-element stacks used to construct Noise2Noise training pairs in the notebooks.


These files are intended for use with the Jupyter notebooks provided in the GitHub repository:https://github.com/redrodion/setkafluo

The notebooks demonstrate the complete workflow for:



exploring multi-element detector data,

constructing Noise2Noise training pairs from detector-element splits,

training the U-Net denoiser,

benchmarking hyperparameter choices, and

comparing denoised results with conventional approaches.




How to Use This Dataset (for Google Colab)

Step 1: Download the two archives provided here:



input_data.zip

training.zip


Step 2: Create the following folder on your Google Drive (top level):

MyDrive/setkafluo_demo/

Step 3: Unzip both archives inside this folder. After extraction, you should have:

MyDrive/setkafluo_demo/input_data/
MyDrive/setkafluo_demo/training/

Step 4: From the SetkaFluo GitHub repository, copy the following into Google Drive:



the five Jupyter notebooks, and

the libs/ directory


Place them in this exact location:

MyDrive/setkafluo_demo/notebooks_and_library/
    01_data_exploration.ipynb
    02_denoising_prep.ipynb
    03_denoising_params.ipynb
    04_denoising_main.ipynb
    05_denoising_compare.ipynb
    libs/

Step 5: Open any of the notebooks in Google Colab. They expect the dataset to be located under MyDrive/setkafluo_demo/ and will run without modification.

This structure reproduces the environment used in the companion publication and ensures seamless execution on free-tier Google Colab GPU machines.
DOI: 10.5281/zenodo.17871604
title: SetkaFluo Demo Dataset and Training Inputs for Noise2Noise Denoising of Multi-Element XRF Maps

description: SetkaFluo is a self-supervised deep-learning workflow for denoising multi-element X-ray fluorescence (XRF) detector maps using Noise2Noise training.

This Zenodo deposit provides the example datasets and training inputs required to run all Jupyter notebooks distributed in the SetkaFluo GitHub repository.

Reference:Shishkov R, Laugros A, Vigano N, Bohic S, Karpov D, Cloetens P.Self-Supervised Deep-Learning Denoising for X-Ray Fluorescence Microscopy with Multi-Element Detectors.ChemRxiv (2025). DOI: 10.26434/chemrxiv-2025-lsxpc

Dataset Contents



input_data.zip – example fitted XRF maps and detector-element images for data exploration and inference.

training.zip – detector-element stacks used to construct Noise2Noise training pairs in the notebooks.


These files are intended for use with the Jupyter notebooks provided in the GitHub repository:https://github.com/redrodion/setkafluo

The notebooks demonstrate the complete workflow for:



exploring multi-element detector data,

constructing Noise2Noise training pairs from detector-element splits,

training the U-Net denoiser,

benchmarking hyperparameter choices, and

comparing denoised results with conventional approaches.




How to Use This Dataset (for Google Colab)

Step 1: Download the two archives provided here:



input_data.zip

training.zip


Step 2: Create the following folder on your Google Drive (top level):

MyDrive/setkafluo_demo/

Step 3: Unzip both archives inside this folder. After extraction, you should have:

MyDrive/setkafluo_demo/input_data/
MyDrive/setkafluo_demo/training/

Step 4: From the SetkaFluo GitHub repository, copy the following into Google Drive:



the five Jupyter notebooks, and

the libs/ directory


Place them in this exact location:

MyDrive/setkafluo_demo/notebooks_and_library/
    01_data_exploration.ipynb
    02_denoising_prep.ipynb
    03_denoising_params.ipynb
    04_denoising_main.ipynb
    05_denoising_compare.ipynb
    libs/

Step 5: Open any of the notebooks in Google Colab. They expect the dataset to be located under MyDrive/setkafluo_demo/ and will run without modification.

This structure reproduces the environment used in the companion publication and ensures seamless execution on free-tier Google Colab GPU machines.
DOI: 10.15468/dl.bermks
title: Occurrence Download

description: A dataset containing 3972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equus ferus",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 3972 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045385-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbe6ku
title: Occurrence Download

description: A dataset containing 2210364 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 64.085278",
 "DecimalLatitude is less than or equal to 69.085278",
 "DecimalLongitude is greater than or equal to 15.0",
 "DecimalLongitude is less than or equal to 20.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 2210364 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045356-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.