cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.r4xgxd2c5
title: Using the Area of Habitat to assess the extent of protection of India's birds

description: India hosts multiple global biodiversity hotspots while being one of the
 most populous countries in the world. Here, we examine how well India has
 protected its avifauna, based on the fraction of their ranges falling
 within “protected areas.” India has protected 5% of its land this way. The
 issue is whether India has done better than expected in protecting its
 threatened species. To this end, we assessed 99 Near Threatened,
 Threatened, and small-ranged species by estimating their Area of Habitat
 (AOH). We refined published species ranges using secondary information on
 elevation limits and habitat preferences. More than half (52) of the
 species assessed have their AOH &lt;30% of their published ranges,
 while 31 have &lt;10%. India has protected 87 threatened species'
 AOH more than expected (&gt;5%), and for 33 species, the proportion
 protected exceeds the Aichi target (&gt;17%). When we consider the top
 10% richest regions as hotspots, only 9.2% of their total area falls under
 India's protected area network, inadequately covering areas with most
 threatened birds. We also discuss the conservation concerns for grassland
 and open habitat species across India, since we find that substantial
 proportions of their AOHs fall outside protected areas. This result
 highlights the significance of alternative conservation models, including
 other effective area-based conservation measures. We show that
 species' AOH provides a more realistic well-informed range that can
 aid in assessing their protection status.
DOI: 10.5061/dryad.jh9w0vtb5
title: Zircon U-Pb geochronology of Baoyintu beds in the northwestern margin of the North China Craton

description: The Baoyintu Inlier is located at the northwestern margin of the North
 China Craton (NCC). Here we present LA-ICP-MS and SHRIMP U-Pb data for
 zircons extracted from samples of monzogranitic orthogneiss and units in
 the beds. The 1679±13 Ma date for the orthogneiss demonstrates that Late
 Palaeoproterozoic rocks do exist in the inlier. The ca. 1413 Ma minimum
 age of detrital zircons in metasedimentary rocks shows that the maximum
 age of the Baoyintu beds is Mesoproterozoic. The age distribution of
 detrital zircons in the structurally lowest exposed part of the beds form
 clusters at ca. 2680, 2450, 1800 and 1560 Ma, which partly correspond to
 tectonic-magmatic–metamorphic events previously recognised in the NCC. A
 structurally higher unit in the beds yields age peaks at ca. 1640 and 1500
 Ma limiting the maximum age of the beds at ca. 1500 Ma. Amphibolite with a
 dolerite protolith from the upper unit also shows evidence for
 metamorphism during ca. 877-851 Ma.
DOI: 10.7291/d1m388
title: Data from: A fast and efficient single-stranded genomic library preparation method optimized for ancient DNA

description: We present a protocol to prepare extracted DNA for sequencing on the
 Illumina sequencing platform that has been optimized for ancient and
 degraded DNA. Our approach, the Santa Cruz Reaction or SCR, uses
 directional splinted ligation of Illumina’s P5 and P7 adapters to convert
 natively single-stranded DNA and heat denatured double-stranded DNA into
 sequencing libraries in a single enzymatic reaction. To demonstrate its
 efficacy in converting degraded DNA molecules, we prepare five ancient DNA
 extracts into sequencing libraries using the SCR and two of the most
 commonly used approaches for preparing degraded DNA for sequencing: BEST,
 which targets and converts double-stranded DNA, and ssDNA2.0, which
 targets and converts single-stranded DNA. We then compare the efficiency
 with which each approach recovers unique molecules, or library complexity,
 given a standard amount of DNA input. We find that the SCR consistently
 outperforms the BEST protocol in recovering unique molecules and, despite
 its relative simplicity to perform and low cost per library, has similar
 performance to ssDNA2.0 across a wide range of DNA inputs. The SCR is a
 cost- and time-efficient approach that minimizes the loss of unique
 molecules and makes accessible a taxonomically, geographically, and
 temporally broader sample of preserved remains for genomic analysis.
DOI: 10.7272/q61r6nrz
title: Compartmentalization of cerebrospinal fluid inflammation across the spectrum of HIV infection

description: Objective: To characterize the evolution of central nervous system (CNS)
 inflammation in HIV-1 infection applying a panel of cerebrospinal fluid
 (CSF) inflammatory biomarkers to grouped subjects representing a broad
 spectrum of systemic HIV-1 immune suppression, CNS injury and viral
 control. Methods: This is a cross-sectional analysis of archived
 CSF and blood samples, assessing concentrations of 10 functionally diverse
 soluble inflammatory biomarkers by immunoassays in 143 HIV-1-infected
 subjects divided into 8 groups: untreated primary HIV-1 infection (PHI);
 four untreated groups defined by their blood CD4+ T lymphocyte counts;
 untreated patients presenting with subacute HIV-associated dementia (HAD);
 antiretroviral-treated subjects with &gt;1 years of plasma viral
 suppression; and untreated elite controllers. Twenty HIV-1-uninfected
 controls were included for comparison. Background biomarkers included
 blood CD4+ and CD8+ T lymphocytes, CSF and blood HIV-1 RNA, CSF white
 blood cell (WBC) count, CSF/blood albumin ratio, CSF neurofilament light
 chain (NfL), and CSF t-tau. Findings: HIV-1 infection was associated with
 a broad compartmentalized CSF inflammatory response that developed early
 in its course and changed with systemic disease progression, development
 of neurological injury, and viral suppression. CSF inflammation in
 untreated individuals without overt HAD exhibited at least two overall
 patterns of inflammation as blood CD4+ T lymphocytes decreased: one that
 peaked at 200-350 blood CD4+ T cells/µL and associated with lymphocytic
 CSF inflammation and HIV-1 RNA concentrations; and a second that steadily
 increased through the full range of CD4+ T cell decline and associated
 with macrophage responses and increasing CNS injury. Subacute HAD was
 distinguished by a third inflammatory profile with increased blood-brain
 barrier permeability and robust combined lymphocytic and macrophage CSF
 inflammation. Suppression of CSF and blood HIV-1 infections by
 antiretroviral treatment and elite viral control were associated with
 reduced CSF inflammation, though not fully to levels found in HIV-1
 seronegative controls.
description: CSF was collected by lumbar puncture and plsama/serum by
 phlebotomy. CSF was placed immediately on wet ice and subsequently
 subjected to low-speed centrifugation to remove cells, aliquoted and
 stored within 2 hours of collection at &lt;-70°C
 until the time of HIV-1 RNA and biomarker assays. Blood was collected
 either in EDTA or as serum, aliquoted and stored in parallel with CSF for
 later batch assays. Details are outlined in the manuscript derived from
 this data.
description: This dataset details the results of inflammatory biomarker
 measurements and background biomarkers in CSF and blood in a spectrum of
 HIV-infected individuals along with uninfected controls. The samples were
 selected from archived samples collected in San Francisco and Gothenburg
 as detailed in the parent manuscript.
DOI: 10.5061/dryad.n2z34tmwg
title: No evidence for a role of trills in male response to territorial intrusion in a complex singer, the Thrush Nightingale

description: Among the broad diversity of songbird vocalisations, song can serve a wide
 range of different functions depending on the species and context. In many
 species, aggressive motivation has often been linked with the use of fast
 repeated series of elements typically referred to as trills. However, only
 a few studies explored the role of this specific component in species with
 a large repertoire and high song complexity. Here, we investigate the
 potential role of trills in the territorial vocal response of males Thrush
 Nightingale (Luscinia luscinia), a species with complex songs
 characterised by the frequent use and diversity of their trills. We
 performed playback experiments simulating territorial intrusion to test if
 trills signal aggressive motivation in this species. If so, we expected
 tested males to respond by changing their trill rate or frequency of trill
 use in songs, and/or using different trill types than before the
 stimulation. Contrary to our expectation, males did not modify their trill
 rate or differed in trill type use before, during or after playback. There
 was a tendency for a decrease in trill duration and the number of elements
 in the trills during the playback stimulation, reflecting to some extent
 the overall use of shorter songs by males during that stage of the
 experiment. Altogether, our study does not support the role of trills as
 motivation signals for territory defense in Thrush Nightingales, but
 advocates for more research on their potential roles in signalling other
 information.
description: Recordings of songs of Thrush Nightingale were played back to
 conspecific males, and their vocal response were recorded and analysed.
 Recordings of both spontaneous and provoked songs were analysed for the
 trill repertoire as well as trill temporal characteristics.
description: All experimental recordings used in the analysis have been
 deposited in the Animal Sound Archive at the Museum for Natural History in
 Berlin and are available under the CC-BY-SA Licence at the following DOI:
 10.7479/b478-jj11.
DOI: 10.5061/dryad.2rbnzs7nd
title: Ecological resilience of physical plant–soil feedback to chronic deer herbivory: slow, partial but functional recovery

description: Ecological resilience to ungulate overbrowsing is an important issue in
 forest ecosystem. After chronic herbivory, the recovery rate of understory
 vegetation and its related functions can be slow even with decreasing
 grazing intensity; thus, detecting elasticity during alternative
 successional trajectories is fundamental to understanding state
 perturbations. In this context, we focused on physical plant–soil feedback
 (functional interactions between plant growths and soil physical
 conditions), and evaluated elasticity and recovery processes according to
 deer density. The effects of 40-year chronic herbivory by sika deer
 (average density 14.7 individuals km-2) on the recovery of understory
 plant communities and associated improvements in soil physical properties
 in headwater catchments were assessed. Using 8 years of catchment-wide
 exclusion (fenced) and reduction (only culled; average 4.3 individuals
 km-2) treatments, plot sampling was conducted in 2010 (before treatment)
 and 2018 (after treatment). The recovery of vegetation and soil physical
 properties were evaluated, and functional plant–soil relationships and
 spatial variability were assessed to detect recovery processes during
 alternative successional trajectory. Woody species increased only under
 the exclusion treatment and the average soil bulk density was lower than
 that under reduction treatments. Soil bulk density was negatively
 correlated with root biomass in the fenced catchment, and root biomass was
 positively associated with woody species richness. Reduced soil bulk
 density (~0.5 g cm-3) was observed with greater root biomass and woody
 species richness on upper hillslopes in the deer-excluded catchment where
 plant coverage was minimal. Successional failure under the reduction
 treatment suggested slow recovery with a depressed threshold according to
 deer density, indicating a clockwise hysteretic response to deer density.
 Unlike plant coverage during the earlier period of overbrowsing, woody
 species root development led the recovery of functional physical
 plant–soil feedback; however, this was probably limited by the higher soil
 erosion rate in riparian areas and an underdeveloped herb layer. Our
 results highlight an alternative recovery trajectory of physical
 plant–soil feedback driven by an alternative plant element (woody roots)
 to degradation trajectory with decreasing plant cover. However, riparian
 erosion and herb layer would still suppress recovery. Therefore, recovery
 might be slower at landscape scale.
DOI: 10.5061/dryad.n2z34tmwh
title: Olympic International Federation environmental sustainability progress and social media data

description: Purpose: The purpose of this paper is to consolidate knowledge and
 benchmark the progress being made across the 32 International Federations
 (IFs) in the Summer Olympic Programme. Design/Methodology/Approach: A
 website content analysis, analytical hierarchy of information, and social
 media research was conducted to triangulate the barriers and drivers of
 environmental sustainability (ES) progress.  This data was then
 analysed to empirically substantiate the findings of previous methods by
 exploring potential drivers of IF ES progress and communication and
 refining the ranking of IF ES progress. Results and Findings: World
 Sailing is by far the most advanced IF in terms of ES progress, followed
 by World Athletics. Only 4 out of 32 have any sort of strategic ES plans.
 Only Golf, Surfing, Football, Sailing, and Hockey having received any
 academic attention. There is a significant lack of understanding of
 environmental practices across sport, and their drivers/barriers. There is
 limited accountability with regards to ES progress and activities
 throughout the Olympic Movement. This has resulted in uneven diffusion of
 environmental activities. Originality: This paper is a new contribution to
 Sport Management and ES literature. It provides a benchmark of
 understanding for ES in the Summer Olympic Programme for the first time
 using a hierarchy of information to ground results. The exploration and
 comparison of separate sports perspective adds to the paper's
 originality.
DOI: 10.5061/dryad.8w9ghx3mf
title: Unifying community detection across scales from genomes to landscapes

description: Biodiversity science encompasses multiple disciplines and biological
 scales from molecules to landscapes. Nevertheless, biodiversity data are
 often analyzed separately with discipline-specific methodologies,
 constraining resulting inferences to a single scale. To overcome this, we
 present a topic modeling framework to analyze community composition in
 cross-disciplinary datasets, including those generated from metagenomics,
 metabolomics, field ecology, and remote sensing. Using topic models, we
 demonstrate how community detection in different datasets can inform the
 conservation of interacting plants and herbivores. We show how topic
 models can identify members of molecular, organismal, and landscape-level
 communities that relate to wildlife health, from gut microbes to forage
 quality. We conclude with a future vision for how topic modeling can be
 used to design cross-scale studies that promote a holistic approach to
 detect, monitor, and manage biodiversity.
description: Please see ReadMe file and Supporting Information for
 methodologcal and modeling details.
DOI: 10.5061/dryad.zs7h44j88
title: Data associated to: A bioenergetics approach to understanding sex differences in the foraging behaviour of a sexually monomorphic species

description: Many animals show sexually divergent foraging behaviours reflecting
 different physiological constraints or energetic needs. We used a
 bioenergetics approach to examine sex differences in foraging behaviour of
 the sexually monomorphic northern gannet. We used the relationship between
 dynamic body acceleration and energy expenditure to investigate energetic
 cost of prey capture attempts (plunge dives). Fourteen gannets were
 tracked using GPS, TDR, and accelerometers. All plunge dives in a foraging
 trip represented &lt;4% of total energy expenditure, with no
 significant sex differences in expenditure. Despite females undertaking
 significantly more dives than males, the low energetic cost resulted in no
 sex differences in overall energy expenditure across a foraging trip.
 Bayesian stable isotope mixing models based on blood samples highlighted
 sex differences in diet, however, calorific intake from successful prey
 capture was estimated to be similar between sexes. Females experienced
 9.6% higher energy demands, due to unequal chick provisioning. Estimates
 show a minimum of 21% of dives have to be successful for females to meet
 their daily energy requirements, and 29% for males. Our analyses suggest
 northern gannets show sex differences in foraging behaviour primarily
 related to dive rate and success rather than the energetic cost of
 foraging or energetic content of prey.
DOI: 10.5281/zenodo.18396934
title: МИФОЛОГИЧЕСКИЕ ОБРАЗЫ И ИХ ФУНКЦИИ В ХУДОЖЕСТВЕННОЙ СИСТЕМЕ М. А. БУЛГАКОВА
DOI: 10.5281/zenodo.18396935
title: МИФОЛОГИЧЕСКИЕ ОБРАЗЫ И ИХ ФУНКЦИИ В ХУДОЖЕСТВЕННОЙ СИСТЕМЕ М. А. БУЛГАКОВА
DOI: 10.5061/dryad.98sf7m0j0
title: Tripartite symbioses regulate plant-soil feedback in alder

description: • Plant-soil feedbacks regulate plant productivity and diversity, but
 potential mechanisms underpinning such feedbacks, such as the allocation
 of recent plant assimilate, remain largely untested especially for plants
 forming tripartite symbioses.     • We tested
 how soils from under alder (Alnus glutinosa) and beneath other species of
 the same and different families affected alder growth and nutrition, and
 colonisation of roots by nitrogen-fixing Frankia bacteria and
 ectomycorrhizal fungi. We also measured how the soil environment affected
 carbon capture and allocation by pulse-labelling seedlings with 13CO2. We
 then tested for linkages between foliar nutrient stoichiometry and carbon
 capture and allocation and soil origin using statistical modelling
 approaches.     • Performance of alder and
 nitrogen nutrition were best on home and birch (Betula pendula) soils
 (both Betulaceae), while performance on Douglas fir (Pseudotsuga
 menziesii) (Pinaceae) soil was poor. Plants growing in P. menziesii soil
 were virtually devoid of Frankia and ectomycorrhizas, and the natural
 abundance 15N signatures of leaves were more enriched indicating distinct
 nitrogen acquisition pathways. Seedlings in these soils also had smaller
 13C fixation and root allocation rates, leading to smaller 13C respiration
 rates by microbes.     • Statistical models
 showed that the best predictors of foliar N concentration were 13C
 allocation rates to fine roots and net CO2 exchange from the mesocosms.
 The best predictors for foliar phosphorus concentration were net CO2
 exchange from the mesocosms and soil origin; seedlings in home soils
 tended to have greater foliar phosphorus compared to birch soils while
 seedlings from Douglas fir soils were no different from the other
 treatments. Foliar phosphorus concentration was not correlated with plant
 available or total soil phosphorus for any of the soils. Home soils also
 resulted in distinct ectomycorrhizal communities on seedlings roots, which
 could be responsible for greater foliar phosphorus concentration.
     • Our findings show how the association of
 alder with nitrogen-fixing Frankia relieved nitrogen limitation in the
 seedling triggering a performance feedback loop. We propose that relief of
 nitrogen limitation likely increases plant phosphorus demand, which may
 promote the formation of ectomycorrhizas in nutrient-deficient soils. The
 formation of tripartite symbioses therefore generate positive plant-soil
 feedbacks, which enables plants to acquire mineral nutrients otherwise
 inaccessible in trade for carbon.
DOI: 10.6086/d1b69n
title: Data from: Time of day prioritizes the pool of translating mRNAs in response to heat stress

description: The circadian clock helps organisms to anticipate and coordinate gene
 regulatory responses to changes in environmental stimuli. Under growth
 limiting temperatures, time of day modulates the accumulation of
 polyadenylated mRNAs. In response to heat stress, plants will conserve
 energy and selectively translate mRNAs. How the clock and/or time of day
 regulates polyadenylated mRNAs bound by ribosomes in response to heat
 stress is unknown. In-depth analysis of Arabidopsis thaliana translating
 mRNAs found that time of day gates the response of approximately one-third
 of the circadian regulated heat responsive translatome. Specifically, time
 of day and heat stress interact to prioritize the pool of mRNAs in cue to
 be translated. For a subset of mRNAs, we observed a stronger gated
 response during the day, and preferentially before the peak of expression.
 We propose previously overlooked transcription factors (TFs) as regulatory
 nodes and show that the clock plays a role in the temperature response for
 select TFs. When the stress was removed, the redefined priorities for
 translation recovered within one-hour, though slower recovery was observed
 for abiotic stress regulators. Through hierarchical network connections
 between clock genes and prioritized TFs, our work provides a framework to
 target key nodes underlying heat stress tolerance throughout the day.
DOI: 10.5061/dryad.4b8gthtc7
title: Moisture-tagging simulation to investigate the link between the moisture sources and interannual oxygen isotope variability of the Indian Summer Monsoon precipitation

description: The primary influences on the spatio-temporal variability of oxygen
 isotope compositions in precipitation over the Indian summer monsoon
 domain are inadequately constrained by the limited observational record.
 Consequently, the climatic significance of isotopic signatures of
 precipitation preserved in proxy archives from the region remains
 unclear.  Here we present simulations with an
 isotope-enabled climate model (IsoGSM2) with the moisture-tagging
 capability to investigate the role of relative contributions of moisture
 from oceanic and terrestrial sources to the interannual variability in
 oxygen isotope composition in summer monsoon rainfall. During weak monsoon
 years, the moisture contribution from the Arabian Sea dominates
 precipitation over the Indian subcontinent while the remote oceanic and
 terrestrial sources have a greater influence during strong monsoon years.
 We suggest that changes in monsoon circulation, moisture source, and
 precipitation intensity are interrelated and that speleothem oxygen
 isotope records from the region can potentially help reconstruct
 interannual to decadal monsoon rainfall variability.
DOI: 10.5068/d1f686
title: The width and value of residential streets

description: This dataset provides street-level information on width and the
 land value of street rights-of-way for 20 of the largest counties in the
 United States. Land values are expressed in 2019
 prices. It uses OpenStreetMap and tax parcel
 data as inputs to a GIS-based process. Substantively, residential street
 rights-of-way in the urbanized portion of these counties average 55 ft
 wide, far greater than the functional minimum of 16 ft required for
 access. The land value of residential streets totals $959 billion in the
 urbanized portion of the 20-county sample. In most counties, subdivision
 regulations are binding; that is, few developers choose to build streets
 that are wider than code requirements, implying that softening
 requirements would mean more land devoted to housing and less to
 streets. 
description: Street polygons were created in GIS through filling in the voids
 in county assessor parcel datasets. The land value of these polygons was
 estimated using the census tract-level residential land value data in
 Davis, Larson, Oliner and Shui (2020), "The Price of Residential Land
 for Counties, ZIP Codes, and Census Tracts in the United States,"
 Federal Housing Finance Agency Working Paper 19-01. See
 the code at https://github.com/amillb/streetwidths
description: For more information, see the code
 repository and website.