cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.sntnyu
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nanobubon strictum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 39 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008297-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rw5pay
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbus barbus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1930",
 "Year is less than or equal to 1934"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008298-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wp2kpa
title: Occurrence Download

description: A dataset containing 88265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lynx lynx",
 "Country is one of (Albania, Austria, Bosnia and Herzegovina, Belgium, Bulgaria, Belarus, Switzerland, Cyprus, Czechia, Germany, Denmark, Estonia, Spain, Finland, France, United Kingdom of Great Britain and Northern Ireland, Greece, Croatia, Hungary, Ireland, Italy, Lithuania, Luxembourg, Latvia, Moldova, Republic of, Montenegro, North Macedonia, Malta, Netherlands, Norway, Poland, Portugal, Romania, Serbia, Sweden, Slovenia, Slovakia, Türkiye, Ukraine, Kosovo)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 88265 records from 187 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008268-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4q7uvz
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neogaya simplex",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008299-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ahqexx
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbus barbus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1935",
 "Year is less than or equal to 1939"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008300-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6pd59
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spondylurus haitiae"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008301-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjt7zp
title: Occurrence Download

description: A dataset containing 2033 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Herpailurus yagouaroundi"
 ]
}

 The dataset includes 2033 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008302-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18356380
title: 1230-whale-song-wishes covers A
DOI: 10.5281/zenodo.18356379
title: 1230-whale-song-wishes covers A
DOI: 10.15468/dl.wuganz
title: Occurrence Download

description: A dataset containing 13162 records in GBIF matching the query:
SELECT
 '212' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 8.098015256935714
 AND decimalLatitude &lt;= 12.166598047573723
 AND decimalLongitude &gt;= 0.0
 AND decimalLongitude &lt;= 5.059334038100958
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 13162 records were derived from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008291-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zuvvma
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbus barbus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1940",
 "Year is less than or equal to 1944"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008304-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mkpx2
title: Occurrence Download

description: A dataset containing 748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Niger",
 "OccurrenceStatus is Present",
 "TaxonKey is Balanites aegyptiaca"
 ]
}

 The dataset includes 748 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008305-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ysps6n
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neogoezia minor",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 27 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008306-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/8yt7js
title: Discovering the diversity of the genus Apterotrypa Gorochov (Orthoptera, Oecanthidae, Neometrypini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tonon de Almeida, Vitor, Nihei, Silvio Shigueo, Souza-Dias, Pedro G. B., Denadai de Campos, Lucas (2026): Discovering the diversity of the genus Apterotrypa Gorochov (Orthoptera, Oecanthidae, Neometrypini). Journal of Orthoptera Research 35 (1): 87-102, DOI: 10.3897/jor.35.158842AbstractApterotrypa Gorochov, 2017 is a genus with notable diagnostic characteristics, such as the absence of wings and acoustic communication, traits generally essential for crickets. Exclusive to the neotropical region, Apterotrypa was recently elevated from subgenus to genus and currently includes only three described species. In this study, three new species of Apterotrypa are described based on detailed morphological analyses of adult males and females. The species A. assymmetrica Tonon & Campos, sp. nov., A. hepatica Tonon & Campos, sp. nov., and A. endolongata Tonon & Campos, sp. nov. represent the first records of the genus in Brazil, collected in Pacoti (State of Ceará), Itamaraju (State of Bahia), and Corupá (State of Santa Catarina), respectively. These findings double the number of known species in the genus to six and significantly expand its geographical range from northern to southern South America. Additionally, an updated identification key and a distribution map for the genus are presented. New insights into the biology of Apterotrypa, including potential behaviors, communication, and reproduction strategies, are discussed based on morphological observations and comparisons with related taxa.
DOI: 10.34740/kaggle/dsv/14597501
title: Breast Cancer Gene Expression Dataset
DOI: 10.5281/zenodo.18356388
title: Detecting Test-Specific Refactorings Using Foundation Models
DOI: 10.15468/dl.qu2zdg
title: Occurrence Download

description: A dataset containing 12697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bombus affinis"
 ]
}

 The dataset includes 12697 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008307-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ycuxsx
title: Occurrence Download

description: A dataset containing 245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neonelsonia acuminata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 245 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008309-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5u824
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbus barbus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945",
 "Year is less than or equal to 1949"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008308-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yc487y
title: Occurrence Download

description: A dataset containing 48289341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "HasCoordinate is true",
 "Continent is North America"
 ]
}

 The dataset includes 48289341 records from 1655 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008281-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.bk3j9kd9m
title: Sustainable landscape, soil and crop management practices enhance biodiversity and yield in conventional cereal systems

description: 1. Input-driven, modern agriculture is commonly associated with
 large-scale threats to biodiversity, the disruption of ecosystem services
 and long-term risks to food security and human health. A switch to more
 sustainable yet highly productive farming practices seems unavoidable.
 However, an integrative evaluation of targeted management schemes at field
 and landscape scales is currently lacking. Furthermore, the
 often-disproportionate influence of soil conditions and agrochemicals on
 yields may mask the benefits of biodiversity-driven ecosystem services. 2.
 Here, we used a real-world ecosystem approach to identify sustainable
 management practices for enhanced functional biodiversity and yield on 28
 temperate wheat fields. Using path analysis, we assessed direct and
 indirect links between soil, crop and landscape management with natural
 enemies and pests, as well as follow-on effects on yield quantity and
 quality. A paired-field design with a crossed insecticide-fertilizer
 experiment allowed us to control for the relative influence of soil
 characteristics and agrochemical inputs. 3. We demonstrate that
 biodiversity-enhancing management options such as reduced tillage, crop
 rotation diversity and small field size can enhance natural enemies
 without relying on agrochemical inputs. Similarly, we show that in this
 system controlling pests and weeds by agrochemical means is less relevant
 than expected for final crop productivity. 4. Synthesis and applications:
 Our study highlights soil, crop and landscape management practices that
 can enhance beneficial biodiversity while reducing agrochemical usage and
 negative environmental impacts of conventional agriculture. The
 diversification of cropping systems and conservation tillage are practical
 measures most farmers can implement without productivity losses. Combining
 local measures with improved landscape management may also strengthen the
 sustainability and resilience of cropping systems in light of future
 global change.
description: Field data was collected in 2014 during repeated sampling
 campaigns. Additional data was acquired from soil maps, GIS data bases and
 farm management surveys. Please refer to main paper for details.
description: Some missing values are shown by NAs. The file contains all data
 used in the analyses of this paper. Metadata provided within
 file.
DOI: 10.5061/dryad.bzkh1897h
title: Identification of novel HPFH-like mutations by CRISPR base editing that elevate the expression of fetal hemoglobin

description: Naturally occurring point mutations in the HBG promoter switch hemoglobin
 synthesis from defective adult beta-globin to fetal gamma-globin in sickle
 cell patients with hereditary persistence of fetal hemoglobin (HPFH) and
 ameliorate the clinical severity. Inspired by this natural phenomenon, we
 tiled the highly homologous HBG1 and HBG2 proximal promoters using adenine
 and cytosine base editors that avoid the generation of large deletions.
 Among the novel regulatory region identified, base editing at -123 region
 induced HbF to a higher level than disruption of a well-known BCL11A
 binding site in erythroblasts derived from healthy donor CD34+
 HSPC. We further demonstrated in vitro that the introduction of
 -123T&gt;C and -124T&gt;C HPFH-like mutations drives gamma-globin
 expression by creating a de novo binding site for the master erythroid
 regulator KLF1. Overall, our findings shed light on so far unknown
 regulatory elements within the HBG promoter and identified
 additional targets for therapeutic upregulation of fetal
 hemoglobin.
DOI: 10.5061/dryad.f7m0cfxtz
title: Data from: Separating differential allocation by females from direct effects of male condition in a beetle

description: Differential allocation is the adjustment of reproductive allocation,
 typically by a female, in response to the quality of her male partner. A
 recent theoretical model suggests that differential allocation may
 influence trade-offs between reproductive traits within a breeding
 attempt. Furthermore, it is often difficult to distinguish differential
 allocation from direct effects of male condition. We address these gaps
 using a novel cross-fostering design to exclude direct effects of male
 condition and to test whether differential allocation affects trade-offs
 between and within breeding attempts. This design detects differential
 allocation as effects of a female’s mating partner and direct effects of
 male condition as effects of the larvae’s sire. We used the burying beetle
 Nicrophorus vespilloides, a species which adjusts reproductive allocation
 by culling some larvae after hatching. We used food-deprivation to
 manipulate the nutritional condition of both the female’s mating partner
 and the larvae’s sire. We find clear evidence for differential allocation
 as females mating with food-deprived males had fewer larvae than females
 mating with control males. There was a trade-off between number and size
 of larvae when females mated with control males, but a positive
 relationship when females mated with food-deprived males. Thus,
 differential allocation influenced relationships between reproductive
 traits within a breeding attempt, but not necessarily through trade-offs.
 Instead, we suggest that there may be cryptic heterogeneity in quality
 among females or their mating partners that was only exposed when females
 mated with a male in poor condition.
description: See ReadMe.
DOI: 10.5061/dryad.xpnvx0kdr
title: Solitary bee larvae prioritize carbohydrate over protein in parentally provided pollen

description: Most organisms must regulate their nutritional intake in an environment
 full of complex food choices. While this process is well understood for
 self-sufficient organisms, dependent offspring, such as bee larvae, in
 practice have limited food choices because food is provided by parents.
 Nutrient balancing may therefore be achieved by offspring, by parents on
 offspring’s behalf, or by both, whether cooperatively or in conflict. We
 used the Geometric Framework to investigate the capacity of dependent
 larval mason bees (Osmia bicornis) to regulate their intake of protein and
 carbohydrate. Female Osmia seal eggs individually inside cells they have
 provisioned with pollen, and have no contact with developing offspring,
 allowing offspring choices to be studied in isolation. Herbivorous insect
 larvae are typically expected to balance protein and carbohydrate to
 maximise growth and reproduction. Contrary to prediction, carbohydrate and
 not protein mediated both growth and survival to pupation. Accordingly,
 larvae prioritised maintaining a constant intake of carbohydrate and
 self-selected a relatively carbohydrate-biased diet compared to other
 hymenopterans, while tolerating wide excesses and deficiencies of protein,
 rendering them potentially vulnerable to dietary change or manipulation.
 Reasons for prioritising carbohydrate may include (1) the relative
 abundance of protein in their normal pollen diet, (2) the relative paucity
 of nectar in parental provisions making carbohydrate a scarce resource, or
 (3) the requirement for diapause for all O. bicornis larvae. Larvae were
 intolerant of moderate dietary dilution, likely reflecting an evolutionary
 history of nutrient-dense food. Our results demonstrate that dependent
 offspring can remain active participants in balancing their own nutrients
 even when sedentary, and, moreover, even in mass provisioning systems
 where parents and offspring have no physical contact. Research should now
 focus on whether and how the evolutionary interests of parent and
 dependent offspring coincide or conflict with respect to food composition,
 and the implications for species’ resilience to changing environments.
description: This data package includes the files and code needed to reproduce
 all the figures and analyses of the following paper: Austin, A, Gilbert,
 J. Solitary bee larvae prioritize carbohydrate over protein in parentally
 provided pollen.
DOI: 10.5061/dryad.z08kprrbg
title: Gene annotation of the Fhb1 locus on the assembly of bread wheat variety Norin 61

description: In the areas with wet climate of Eastern Asia, Fusarium head blight (FHB)
 is a major threat to bread wheat production. A source of FHB resistance
 (Fhb1) was identified in the Asian wheat germplasm and through classical
 breeding it was introduced in several varieties
 (https://doi.org/10.1186/s40066-017-0139-z ). The molecular determinant
 was identified as a deletion in an  histidine-rich
 calcium-binding-protein gene on chromosome 3BS.
 (https://doi.org/10.1038/s41588-019-0426-7). The allele is common in many
 East Asia wheat varieties, but not in the reference assembly Chinese
 Spring (CS).  The whole-genome assembly of the Japanese variety
 Norin 61 allowed to confirm the sequence and structure of the haplotype
 surrounding Fhb1. Given the low amount of sequence conservation with CS at
 the locus, we noticed that the annotation based on projections of CS gene
 models (https://doi.org/10.1038/s41586-020-2961-x) did not identify all
 genes in the Norin 61 haplotype. To describe the complete set of coding
 regions in the Fhb1 allele, we de novo annotated the Norin 61 ~340 kb Fhb1
 region with homology- and ab initio-based evidence. MAKER v2.31.9 was run
 on the Norin 61 genomic interval, with the Uniprot Liliopsida proteome,
 and the annotation from https://doi.org/10.1038/s41586-020-2961-x.
 Augustus was run with wheat as a species, and the output was parsed
 removing models that had &gt;40% similarity over &gt;50% of their
 length to TE proteins via BLASTP. Our annotation identified 70
 protein-coding genes, 50 more than the ones identified by homology only.A
 deletion in the start codon (third exon) of TaHRC gene was confirmed as
 the causal mutaiton conferring resistance, and it was present in other
 vaireties having the same resistance. This resource highlights the
 importance of an appropriate characterization of the sequence in a
 non-reference genotype, especially when considering new variants with
 traits important for modern breeding programs.
description: The gene models were predicted with MAKER-P using ab initio
 (Augustus) and homology-based (Chinese Spring, transcriptomes) methods.
 Models encoding transposable element proteins were removed
DOI: 10.5061/dryad.c2fqz6171
title: Invader-pollinator paradox: invasive goldenrods benefit from large size pollinators

description: Aim: Mutualistic interactions between alien plants and native pollinators
 are needed to enable plant invasions. Although the increasing abundance of
 invasive plants in a habitat causes a dramatic decline of native
 pollinators, pollination services received by invaders are often
 sustained. This invader-pollinator paradox might be attributed to
 differences in pollination efficiency and varying vulnerability to
 invasion among pollinators with different life-history traits. In an
 experimental study, we explored the relationships between pollinator body
 size, pollination efficiency and abundance of invasive species. Methods:
 We placed a pair of potted invasive goldenrods (Solidago gigantea) at 25
 sites differing in goldenrod abundance (cover: 0–100 %). Floral visitation
 rate of the potted goldenrods, as well as seed set and viability, were
 noted. Location: Kraków area, Poland. Results: Species richness of
 pollinators visiting inflorescences decreased with the increase of the
 goldenrod cover, whereas the floral visitation rate remained unchanged.
 However, the seed set was positively related to the goldenrod cover. Body
 size of floral visitors was structured along with the goldenrod cover so
 that pollinators’ size increased with the cover. Also, the seed set of the
 potted plants, as well as goldenrod seed viability, depended positively on
 the body size of visiting pollinators. Main conclusions: Invasive
 goldenrods did not suffer from pollinator shortage and inefficient
 pollination, especially in habitats densely covered by the invader, due to
 the presence of large-bodied pollinators. Our study highlights that
 pollination and reproduction of invasive plants might be sustained through
 ecological filtering, affecting the composition of pollinators with traits
 increasing pollination efficiency.