cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6732683.v1
title: Decision-making flexibility in New Caledonian crows, young children and adult humans in a multi-dimensional tool-use task

description: We present the
first study on flexible decision-making in an inhibitory control tool-use task
in 3-5-year-old children, adult humans and tool-making New Caledonian crows, using a paradigm previously used to test non-tool making Goffin's cockatoos. Tasks varied in relational complexity,
manipulating reward quality and tool functionality. Suprisingly, adult humans and corvids performed better than children in selecting an immediate reward when a tool was not necessary. In addition, comparisons of our results with those previously published on parrots show that adult humans and cockatoos performed better than crows and children in selecting an immediate reward over a non-functional tool. By contrast, human adults and children outperformed the birds when all task components were present, suggesting that both the cockatoos and corvids struggled to attend to multiple variables without extended experience.
DOI: 10.6084/m9.figshare.1552030.v2
title: Experiment Data for "A Fast Incremental Gaussian Mixture Model"

description: Experiment Data for "A Fast Incremental Gaussian Mixture Model"
DOI: 10.6084/m9.figshare.25272223.v1
title: A high-quality genome of the shrubby cinquefoil (<i>Dasiphora fruticosa</i>)

description: <i>Dasiphora fruticosa</i>, commonly known as the shrubby cinquefoil, is a flowering shrub of highly ornamental value yet underutilized in East Asian landscapes. Given its broad elevational distribution range, <i>D. fruticosa</i> is also an ideal model for studying genetic adaptations and speciation along elevation gradients. Here, we present a high-quality chromosome-scale assembly of<i> D. fruticosa </i>with a genome size of 249.23 Mb and a contig N50 length of 14.01 Mb. The genome contains 32,613 protein-coding genes, of which 30,643 (93.96%) were functionally annotated.
DOI: 10.6084/m9.figshare.25794388.v1
title: Table S4 from Body-size dependent effects of landscape-level resource energetics on pollinator abundance in woodland remnants

description: Table S4. Floral resources for each partner plant species in the metaweb (grey) and other common species occurring in the study area (white). Nectar sugar mass for fructose, glucose and sucrose and their energy content are reported. Nectar energy per flower is the sum of energy content of all sugars per flower. Pollen mass per flower is total pollen mass available per flower. Pollen energy content per flower is based on the average energy content across all samples for seven species (Table S2). Species for which we did not estimate resources were either assigned the values of the nearest species in our dataset, or data from the literature were used (see far right columns). Nectarless species are marked ‘NA’. Species with an ‘*’ are non-native.
DOI: 10.6084/m9.figshare.25706511.v1
title: New Article Data.sav

description: This research aims to analyze the relationship between Environmental Prosocial Attitudes toward Green Consumption Values; Green Consumption Values, and their relationship with Openness to Green Communication, Green Consumption Values and Openness to Green Communication, and their relationship with buying behavior. The findings demonstrate how widespread environmental prosocial attitudes and beliefs are directly related to green consumption and values. As a result, these green values can have a positive relationship with openness to green advertising and green buying behavior. The connection between these ideas becomes crucial when determining how to create green marketing strategies and communication plans that can encourage eco-friendly behavior.
DOI: 10.6084/m9.figshare.25927243.v1
title: H5_W

description: Power related data for House 5
DOI: 10.6084/m9.figshare.16881889.v1
title: Supplementary Material for: Longitudinal Follow-Up and Outcomes for Chinese Patients with Stage 1–4 Chronic Kidney Disease

description: <b><i>Introduction:</i></b> Understanding heterogeneity in the prognosis of chronic kidney disease (CKD) has implications in management of patients. We aimed to evaluate the comparative risk of end-stage kidney disease (ESKD), cardiovascular (CV) events, and death among patients with CKD in China. <b><i>Methods:</i></b> In total, 3,700 patients with CKD stage 1–4 were recruited from 39 clinical centers in China between 2011 and 2016. New occurrence of ESKD, CV events, and all-cause mortality was recorded until the end of 2017. The crude incidence rate was calculated for each outcome. Ratios of incidence between different outcomes were generated with 95% confidence interval (CI) estimated by 1,000 times of bootstrapping. Multivariable adjusted Cox regression models accounting for competing risk between the outcomes were used to evaluate the association of risk factors with the outcomes. <b><i>Results:</i></b> The population mean age was 50 ± 14 years, with 58.2% male and 60.3% of glomerulonephritis. After a median follow-up of 4.65 years (interquartile range [IQR]: 3.71–5.60 years) for ESKD, 4.76 years (IQR: 3.97–5.76 years) for CV events, and 4.84 years (IQR: 3.97–5.76 years) for death, the incidence rates of the 3 outcomes were 3.1, 1.5, and 0.92/100 patient-years, respectively. The ratio for the incidence of ESKD and CV events was 2.15 (95% CI: 1.87, 2.53) and that for incidence of ESKD and death was 3.41 (95% CI: 2.88, 4.08). Significant differences regarding the ratios were detected through levels of age, history of CV disease, the estimated glomerular filtration rate (eGFR), urine albumin-to-creatinine ratio (uACR), and etiology of CKD. In the Cox regression model adjusting for traditional CV and kidney-specific risk factors, older age was associated with a higher risk of CV events and death but a lower risk of ESKD (hazard ratios [HRs] = 1.45 [95% CI: 1.29, 1.64], 1.48 [95% CI: 1.29, 1.70], and 0.78 [95% CI: 0.73, 0.84] per 10 year increase, respectively). By comparison, reduced eGFR was associated with a higher risk of ESKD and death, rather than CV events (HRs = 3.62 [95% CI: 2.96, 4.43], 1.30 [95% CI: 1.02, 1.66], and 1.22 [95% CI: 0.99, 1.49] per 30.26 mL/min/1.73 m<sup>2</sup> increase, respectively). Similar patterns were seen for increased uACR (HRs = 1.42 [95% CI: 1.30, 1.55], 1.17 [95% CI: 1.05, 1.30], and 1.07 [95% CI: 0.99, 1.17] per 1 natural log-transformed value increase, respectively). <b><i>Conclusion:</i></b> ESKD was more likely to occur than CV events and death in the population with CKD stage 1–4 in China. Traditional risk factors contributed differently to the comparative risk of the outcomes.
DOI: 10.6084/m9.figshare.26233196.v4
title: eIF6 deficiency alleviates colorectal cancer through maintaining the intestinal barrier and homeostasis of gut microbiota

description: In this study, we demonstrate the mitigating effect of eIF6 deficiency on the progression of CRC in an AOM/DSS-induced mouse model, elucidating how eIF6 deficiency directly alleviates CRC progression through its impact on the gut microbiota. We observe that eIF6 deficiency promotes colonic epithelial regeneration, maintains intestinal barrier integrity, and suppresses tumor proliferation in CRC mice. The eIF6 deficiency-modulated gut microbiota directly contributes to alleviating CRC progression. Furthermore, eIF6 deficiency-dependent <i>Dubosiella newyorkensis</i> reduces monocyte aggregation, inhibits the MAPK and NF-κB carcinogenic pro-inflammatory pathways, thereby attenuating CRC progression. These findings confirm the pivotal role of the gut microbiota in mediating the alleviation of CRC progression of eIF6 deficiency.
DOI: 10.6084/m9.figshare.11841474.v1
title: Supplementary Material for: Serum Alkaline Phosphatase Level Predicts Cardiac Valve Calcification in Maintenance Hemodialysis Patients

description: <b><i>Purpose:</i></b> Cardiac valve calcification (CVC) is frequently occurred in maintenance hemodialysis (MHD) patients and is associated with cardiovascular and all-cause mortality. This study aimed to evaluate the relationships between risk factors and extent of CVC and further provide the treatment target in MHD patients. <b><i>Methods:</i></b> One hundred and forty-five patients who received MHD ≥3 months were enrolled. CVC was assessed by an echocardiographic, semi-quantitative manner called global cardiac calcium scoring system (GCCS), and demographic, clinical, and laboratory parameters including mineral metabolism markers were collected. <b><i>Results:</i></b> The average age of the patients was 50 ± 12 years, and 54.5% were men. The mean GCCS was 1.8 ± 2.4; 57.2% of patients had GCCS ≥1. Age, dialysis vintage, serum alkaline phosphatase (ALP), and intact parathyroid hormone levels were positively correlated with CVC, whereas serum albumin levels were negatively related to CVC, based on univariate analysis. With multivariate linear regression analysis, serum ALP was the only bone-derived biomarker that showed significant correlation with CVC. Serum ALP ≥232 U/L was a robust predictor of CVC and was associated with the likelihood of GCCS ≥1 (OR 3.92, 95% CI 1.37–11.2, <i>p</i> = 0.011). The decision tree model was used to identify ALP ≥232 U/L and age ≥60 years as important determinative variables in the prediction of CVC in MHD patients. <b><i>Conclusion:</i></b> Serum ALP level is significantly associated with CVC in MHD patients. ALP is suggested to be a promising interventional target for cardiovascular calcification in MHD patients.
DOI: 10.6084/m9.figshare.19499177.v1
title: patches and local annotations, slide 003, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.5241517.v1
title: Erratum: Subendocardial Viability Ratio Predicts Cardiovascular Mortality in Chronic Kidney Disease Patients

description: <b><i>Background:</i></b> The subendocardial viability ratio (SEVR), calculated by pulse wave analysis, is an index of myocardial oxygen supply and demand. Here we analyze the relation between SEVR and cardiovascular mortality in the chronic kidney disease (CKD) population of a post hoc analysis of a multicenter, prospective, randomized, nonblinded study. <b><i>Methods:</i></b> We studied 212 consecutive asymptomatic outpatients receiving care at 12 nephrology clinics in south Italy. Inclusion criteria were age &gt;18 years, 6 months of follow-up before the enrollment and stage 3-4 CKD. <b><i>Results:</i></b> During follow-up, 34 subjects died, 29 of them for cardiovascular causes. SEVR correlated inversely with vascular calcifications (r = -0.37) and myocardial mass (r = -0.45); SEVR changed from 1.33 ± 0.24 to 1.36 ± 0.16 (p = NS; baseline and final values, respectively) in living patients, and from 1.16 ± 0.31 to 0.68 ± 0.26 in deceased patients (p &lt; 0.001). Kaplan-Meier curves show that that a greater reduction of SEVR values during the study (third tertile) significantly predicts cardiovascular mortality (p &lt; 0.0001). <b><i>Conclusions:</i></b> This post hoc analysis shows that a reduction of SEVR values impacts cardiovascular mortality in CKD patients.
DOI: 10.6084/m9.figshare.20047748.v1
title: Supplementary Material for: Adoptively Transferred in vitro-Generated Myeloid-Derived Suppressor Cells Improve T-Cell Function and Antigen-Specific Immunity after Traumatic Lung Injury

description: Immune reactions after trauma are characterized by immediate activation of innate immunity and simultaneously downregulation of adaptive immunity leading to a misbalanced immunohomeostasis and immunosuppression of the injured host. Therefore, the susceptibility to secondary infections is strongly increased after trauma. Immune responses are regulated by a network of immune cells influencing each other and at the same time modifying their functions dependent on the inflammatory environment. Although myeloid-derived suppressor cells (MDSCs) are initially described as T-cell suppressors, their immunomodulatory capacity after trauma is mostly undefined. Therefore, in vitro-generated MDSCs were adoptively transferred into mice after blunt chest trauma (TxT). A single MDSC treatment-induced splenic T-cell expansion decreased apoptosis sensitivity and improved proliferation in the absence of T-cell exhaustion until 2 weeks after trauma. MDSC treatment had a long-lasting effect on the genomic landscape of CD4<sup>+</sup> T cells by upregulating primarily Th2-associated genes. Remarkably, immune-activating functions of MDSCs supported the ability of TxT mice to respond to post-traumatic secondary antigen challenge. Secondary insults were mimicked by immunizing MDSC-treated TxT mice with ovalbumin (OVA), followed by OVA restimulation in vitro. MDSC treatment significantly increased the frequency of OVA-specific T cells, enhanced their Th1/Th2 cytokine expression, and induced upregulation of cytolytic molecules finally improving OVA-specific cytotoxicity. Overall, we could show that therapeutic MDSC treatment after TxT improves post-traumatic T-cell functions, which might enable the traumatic host to counterbalance trauma-induced immunoparalysis.
DOI: 10.6084/m9.figshare.19158149.v1
title: Z-number-based-Decision-Matrix-initial-non-normalized.xlsx

description: This file contains values of criteria of alternatives expressed by Z-numbers. Z-numbers expressed by membership function, not in linguistic form. The values are in initial form, non-normalized.
DOI: 10.6084/m9.figshare.22303690.v1
title: Phylogenetic tree from core gene alignment

description: Phylogenetic tree computed from the core gene alignment of the 2,302 complete <em>E. coli</em> from RefSeq (command MSA in Ppanggolin). The tree was computed with Iqtree 1.6.12 (PMID: 25371430) using the GTR+F+I+G4 model.
DOI: 10.15468/dl.6jqw3m
title: Occurrence Download

description: A dataset containing 145383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Caledonia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tracheophyta",
 "Year 1950-2024"
 ]
}

 The dataset includes 145383 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042900-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24298336.v1
title: VTA_DA_Vis2AFC

description: Data related to Lak et al Neuron 2020 paper
DOI: 10.6084/m9.figshare.c.3258022_d1.v1
title: Free Breathing.zip

description: 51 free breathing (normal breathing) trials in total from 11 subjects.

Chest surface motion is of significant importance as it contains information of respiratory and cardiac systems along with the complex coupling between these two systems. It is not only critical in radiotherapy, but also useful in personalized health systems for continuous cardiorespiratory monitoring. In this dataset, a multimodal setup is employed to simultaneously acquire cardiorespiratory signals. These signals include high-density trunk surface motion (from 16 distinct locations) with VICON motion capture, nasal breathing from thermal sensor, respiratory effort from strain belt and electrocardiogram in lead-II configuration. This dataset can not only be used for evaluating prediction algorithms for radiotherapy applications, but also can be employed for developing techniques to evaluate the cardiomechanics and hemodynamic parameters from chest surface motion in wearable/home monitoring applications.
DOI: 10.6084/m9.figshare.14159579.v1
title: Conwy eDNA data

description: Data from the eDNA sampling of the conwy catchment used to generate figures in the corresponding manuscript.
DOI: 10.6084/m9.figshare.22016723.v1
title: Nord et al. - Seasonal changes in plumage density, plumage mass and feather morphology in the world’s northernmost land bird, the Svalbad Rock Ptarmigan (Lagopus muta hyperborea)

description: Data on seasonal and age-related changes in plumage and feather structure in the Svalbard ptarmigan <em>Lagopus muta hyperborea, </em>used in Nord A, Holje V, Judik B, Folkow LP, Pap PL (2023) - "Seasonal changes in plumage density, plumage mass and feather morphology in the world’s northernmost land bird, the Svalbard Rock Ptarmigan (<em>Lagopus muta hyperborea</em>)".
DOI: 10.6084/m9.figshare.22308523.v1
title: repeat.finding

description: repeat.finding
DOI: 10.11583/dtu.13090508.v1
title: Supplementary data for "Experimental measurements of propulsive factors in following and head waves"

description: The data consists of the time-series of the experiments carried out at SINTEF OCEAN in 2020. Data are filtered to remove undesired noise.
DOI: 10.6084/m9.figshare.25953208.v2
title: Dataset ecommerce

description: <b>Project: Assessment of the relationship between sales efficiency and e-commerce in private dental offices in an emerging Latin-American city</b>
DOI: 10.6084/m9.figshare.13311222.v1
title: Additional file 1 of Sequencing and analysis of gerbera daisy leaf transcriptomes reveal disease resistance and susceptibility genes differentially expressed and associated with powdery mildew resistance

description: Additional file 1: Table S1. Description of read data, quality control and GC content of UFGE 4033 and 06–245-03 gerbera breeding lines. Table S2. Functional annotation of gerbera transcripts performed using Blast2GO. Table S3. Mapping statistics of UFGE 4033 and 06–245-03 samples to de novo transcriptome assembly using Samtools and Qualimap. Samples R1, R2 and R3 represent three biological replicates of UFGE 4033 and S1, S2 and S3 represent three biological replicates of 06–245-03. Table S4. List of gerbera transcripts from powdery mildew resistant (UFGE 4033) and susceptible (06–245-03) breeding lines from the differential expression analysis of gerbera transcriptome. Table S5. List of gerbera transcripts from powdery mildew resistant (UFGE 4033) and susceptible (06–245-03) breeding lines functionally annotated as disease resistance in gerbera transcriptome. Table S6. List of Mildew locus O (MLO)-like transcripts present in the gerbera transcriptome constructed using powdery mildew resistant (UFGE 4033) and susceptible (06–245-03) breeding lines. Table S7. Single nucleotide polymorphisms identified between powdery mildew resistant (UFGE 4033) and susceptible (06–245-03) gerbera breeding lines using RNA-seq and SAMtools, FreeBayes and GATK pipelines. Table S8. Statistics on simple sequence repeats identified in gerbera transcriptome using powdery mildew resistant (UFGE 4033) and susceptible (06–245-03) breeding lines and MISA tools. Table S9. Primers for RT-qPCR analysis of differentially up-regulated R-genes in gerbera for powdery mildew resistance.
DOI: 10.6084/m9.figshare.28006220.v1
title: CO<sub>2 </sub>fertilisation counteracts the negative effect of poor water quality on the growth and photosynthesis of a Great Barrier Reef coralline alga_datasheets

description: 1. The global problem of ocean acidification and localised decline in water quality are major threats to coral reefs worldwide. This study examined the individual and interactive impacts of global and local stressors by investigating the effects of increased seawater <i>p</i>CO<sub>2</sub> , elevated nutrient concentrations and reduced light levels on linear growth and metabolic rates of the common branching crustose coralline alga Lithophyllum pygmaeum.2. We found complex interactions between factors on algal growth and photosynthetic rates, but overall, growth was significantly enhanced by <i>p</i>CO<sub>2</sub> enrichment under all light and nutrient combinations. This is the first study to report a positive growth response in coralline algae to elevated <i>p</i>CO<sub>2</sub> using linear extension methods.3. In contrast, the combination of reduced light levels and high nutrient concentrations simulating poor water quality conditions reduced algal growth rates by up to 67% (compared to individuals exposed to high light, low nutrients and elevated <i>p</i>CO<sub>2</sub>). Decreased light levels reduced linear growth, P gross and P net rates by 33%, 18% and 24%, respectively, highlighting the critical role of light in coralline algal physiology.4. We suggest that poor water quality may counteract any CO<sub>2</sub> fertilisation effect under ocean acidification conditions on the growth of coralline algae, and this has implications for coral reef conservation as it emphasises the importance of improving water quality to maintaining coral reef functions. These results further highlight the need for multifactorial experiments to better understand the interplay between global and local processes on coralline algae growth.
DOI: 10.6084/m9.figshare.22702615.v1
title: R Markdown code for generating figures for ECUVIDA study

description: R markdown code to allow generation of figures.
DOI: 10.6084/m9.figshare.8050358.v1
title: Source Data.xlsx

description: <b>An exceptionally flexible hydrogen-bonded organic framework with large-scale void regulation and adjustable guest accommodation</b><b> abilities</b>
DOI: 10.6084/m9.figshare.28447241.v1
title: Full peptide quant reports and unique peptides for each of the 15 species' searches

description: This FigShare repository contains supporting information for the manuscript entitled Backyard Proteomics - A Case Study in the Black Widow Spider. This repository is an intermediate between the Supporting information provided in the manuscript and the ProteomeXchange https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD051601 publicly available data for the study. The latter contains all original mass spectrometry data and intermediate processed data including assigned peptides, proteins, and their abundances in .SNE file format. Text versions of the protein level data is provided in the paper supporting information and peptide level data is contained within this project.
DOI: 10.6084/m9.figshare.c.3666502_d30.v1
title: Egyptian fruit bat vocalizations files 221

description: Recordings of Rousettus aegyptiacus social vocalizations