cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/jj3-1fe-jpk
title: Gammarus zaddachi Sexton, 1912

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nbf-ebc-a3x
title: Gammarus chevreuxi Sexton, 1913

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cxv-ptt-m6m
title: Aeginina longicornis (Krøyer, 1843)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tp4-6ew-8ba
title: Deshayesorchestia deshayesii (Audouin, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qeh-ab4-57j
title: Orchestia gammarellus (Pallas, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rpa-2ac-k75
title: Gammarus zaddachi Sexton, 1912

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lgx-eap-r61
title: Gammarus locusta (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/38p-5jq-9ll
title: Gammarus salinus Spooner, 1947

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d7z-f5l-cay
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.9tc2xq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mecardonia procumbens (Mill.) Small",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103524-250525065834625/datasets/export for details.
DOI: 10.3535/p7x-x44-c7h
title: Gammarus salinus Spooner, 1947

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zk2-bl4-pfv
title: Gammarus pulex (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4zc-r4q-wr0
title: Niphargus aquilex Schiödte, 1855

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b0h-5sx-4y4
title: Monocorophium insidiosum (Crawford, 1937)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wrc-a8v-776
title: Echinogammarus Stebbing, 1899

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dnj-we3-vhn
title: Gammarus pulex (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lfg-npd-24n
title: Gammarus zaddachi Sexton, 1912

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17632/hb9jjk2gbz
title: Bulk RNASeq Data in Colorectal Cancer

description: Colon adenocarcinoma (CA) is a prevalent gastrointestinal malignancy, with significantly higher incidence than small intestine (SI) adenocarcinoma. However, it remains lack of comprehensive understanding about whether the distinct immune microenvironment between SI and colon is related to CA. Here, we performed bulk and single-cell analyses on immune cells of multiple matched tissues of CA patients and health donors, identifying the ileum-likeness pattern within immune microenvironment as a key feature of CA patients with favorable prognosis. The ileum-likeness pattern is primarily characterized by the less TGF-β+ long-lived plasma cells and the abundant cytotoxic and unexhausted CD160+ T cells. Tracking T cell clones confirmed that CD160+ T cells are highly cytotoxic and less prone to exhaustion. CD160 overexpression on CD8+ T cells significantly enhances anti-tumor immunity and efficiently inhibits tumor growth upon adoptive transfer to tumor-bearing mice. Our study provides comprehensive immune landscape within intestinal tissues and novel insights into intraepithelial T cells in CA, underscores potential targets for CA treatment.
DOI: 10.3535/2g6-h7x-3xg
title: Gammarus locusta (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k2e-cdn-9wc
title: Apocorophium acutum (Chevreux, 1908)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.kkwck2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mecardonia procumbens (Mill.) Small",
 "Country is Nauru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103526-250525065834625/datasets/export for details.
DOI: 10.3535/5g9-pll-6zg
title: Corophium volutator (Pallas, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zmk-8yd-66y
title: Gammarus pulex (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.rahhhq
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mecardonia procumbens (Mill.) Small",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 92 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103525-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/hb9jjk2gbz.1
title: Bulk RNASeq Data in Colorectal Cancer

description: Colon adenocarcinoma (CA) is a prevalent gastrointestinal malignancy, with significantly higher incidence than small intestine (SI) adenocarcinoma. However, it remains lack of comprehensive understanding about whether the distinct immune microenvironment between SI and colon is related to CA. Here, we performed bulk and single-cell analyses on immune cells of multiple matched tissues of CA patients and health donors, identifying the ileum-likeness pattern within immune microenvironment as a key feature of CA patients with favorable prognosis. The ileum-likeness pattern is primarily characterized by the less TGF-β+ long-lived plasma cells and the abundant cytotoxic and unexhausted CD160+ T cells. Tracking T cell clones confirmed that CD160+ T cells are highly cytotoxic and less prone to exhaustion. CD160 overexpression on CD8+ T cells significantly enhances anti-tumor immunity and efficiently inhibits tumor growth upon adoptive transfer to tumor-bearing mice. Our study provides comprehensive immune landscape within intestinal tissues and novel insights into intraepithelial T cells in CA, underscores potential targets for CA treatment.
DOI: 10.3535/0eg-whr-z9d
title: Gammarus tigrinus Sexton, 1939

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lsc-pj4-9de
title: Gonodactylus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p9x-v6d-aez
title: Anchisquilla

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gy7-kp2-pcb
title: Gammarus monspeliensis Pinkster, 1972

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vqt-grq-cjf
title: Gammarus pulex (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4w1-0vp-x45
title: Gammarus pulex (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r5t-v0c-mv6
title: Gammarus pulex (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kf0-8hq-lf1
title: Gammarus argaeus Vávra, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vcn-m4w-csw
title: Gammarus crinicornis Stock, 1966

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gvs-nkm-qjt
title: Bathyporeia guilliamsoniana (Spence Bate, 1857)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vf8-qzm-11c
title: Talitridae Rafinesque, 1815

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/71e-6cz-tb1
title: Cryptorchestia cavimana (Heller, 1865)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6fp-d5s-vrh
title: Bathyporeia guilliamsoniana (Spence Bate, 1857)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dvr-s9b-hm7
title: Gammarus crinicornis Stock, 1966

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.34847/nkl.e53f0gw1
title: Manti, Site_0068, Secteur_92-526

description: Mobilier très rare, isolé
description: Source: Études Chypriotes XVI, 2005, p. 123
description: Coverage: District de Limassol
description: Prospection de territoire d'Amathonte
description: coverage: District de Limassol
DOI: 10.3535/kgs-db2-x8b
title: Gammarus chevreuxi Sexton, 1913

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/42q-bzv-anl
title: Microdeutopus gryllotalpa A. Costa, 1853

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/80h-6mf-6w1
title: Pectenogammarus pungens (H. Milne Edwards, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cmf-hzw-7hf
title: Gammarus roeselii Gervais, 1835

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j5b-tla-21d
title: Gammarus aequicauda (Martynov, 1931)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n74-3pz-qxm
title: Monocorophium insidiosum (Crawford, 1937)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h8m-gve-rea
title: Echinogammarus calvus (Margalef, 1956)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yth-6gd-s77
title: Gammarus balcanicus Schäferna, 1923

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cjf-pe9-6l6
title: Gammarus gauthieri (S. Karaman, 1935)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/nj140cs3237
title: 0246_H_AO_AOD

description: Model of the aorta of a 25-year-old female with Marfan syndrome, illustrating the progression of a type B aortic dissection over a seven-year period. Simulation results are availableThis model can be found in the Vascular Model Repository.
DOI: 10.3535/fcw-ecm-6rz
title: Echinogammarus Stebbing, 1899

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tk2-k45-rp5
title: Gammarus pulex (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j5k-4c9-fc7
title: Gammarus pulex (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jy8-58j-4gt
title: Gammarus balcanicus Schäferna, 1923

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ag1-ynh-x5s
title: Corophium Latreille, 1806

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/543-whv-3ar
title: Gammarus pulex (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bst-rzn-23t
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ze6-0st-58k
title: Grandidierella Coutière, 1904

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bw9-nmw-7v2
title: Grandidierella Coutière, 1904

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k8t-hk5-acn
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jfc-nfr-6xj
title: Marinogammarus marinus (Leach, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zt2-rk8-v3g
title: Amphithyrus sculpturatus Claus, 1879

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.8uqduw
title: Occurrence Download

description: A dataset containing 308707979 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Allium ursinum L., Athyrium filix-femina (L.) Roth, Brachypodium sylvaticum (Huds.) P.Beauv., Calamagrostis villosa (Chaix) J.F.Gmel., Capreolus capreolus (Linnaeus, 1758), Carex alba Scop., Carex sylvatica Huds., Convallaria majalis L., Felis silvestris Schreber, 1777, Formica polyctena Foerster, 1850, Galium odoratum (L.) Scop., Helix pomatia Linnaeus, 1758, Hepatica nobilis Schreb., Himantoglossum adriaticum H.Baumann, Hordelymus europaeus (L.) Jess. ex Harz, Imleria badia (Fr.) Vizzini, Lacerta agilis Linnaeus, 1758, Limax maximus Linnaeus, 1758, Luzula luzuloides (Lam.) Dandy & Wilmott, Luzula sylvatica (Huds.) Gaudin, Melica nutans L., Melittis melissophyllum L., Natrix natrix (Linnaeus, 1758), Nostoc commune Vaucher ex Bornet & Flahault, Oxalis acetosella L., Plagiomnium undulatum (Hedw.) T.J.Kop., Polytrichum formosum Hedw., Prenanthes purpurea L., Salvia glutinosa L., Sisyphus schaefferi (Linnaeus, 1758), Sorex araneus Linnaeus, 1758, Sus scrofa Linnaeus, 1758, Tetrao urogallus Linnaeus, 1758, Viola reichenbachiana Jord. ex Boreau, Zootoca vivipara (Lichtenstein, 1823), Thaumetopoea processionea Linnaeus, 1758, Armadillidium versicolor Stein, 1859, Calamagrostis villosa (Chaix) J.F.Gmel., Ceratopogonidae, Collembola, Curculionidae, Elateridae, Forficula auricularia Linnaeus, 1758, Geophilidae, Arthropoda, Lacerta agilis Linnaeus, 1758, Lubricus Li, 2002, Lubricus Li, 2002, Mesostigmata, Octolasion lacteum (Örley, 1881), Protura, Pseudoscorpiones, Symphyla, Tipulidae)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 308707979 records from 29320 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103478-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18176107
title: QBO: monthly zonal stratospheric winds from tropical radiosonde data (mainly Singapore)

description: Monthly Tropical Stratospheric Zonal Winds from Radiosondes

Data Source and Processing:

Monthly mean zonal wind data for the tropics are provided as a service for the global QBO and trend analysis communities. The original data source and processing chain were established by the Free University of Berlin (FUB). Currently, the data is processed at the Karlsruhe Institute of Technology (KIT, ROR:04t3en479), Institute of Meteorology and Climate Research (IMK), Germany with the tools developed at FUB.

Data Description:

The dataset includes monthly mean zonal wind values at pressure levels 100, 90, 80, 70, 60, 50, 45, 40, 35, 30, 25, 20, 15, 12, and 10 hPa, derived from radiosonde observations at four equatorial stations:



Kiribati (Canton Island) - data from 1953 to 1967 (closed)

Maldives (Gan Island) - data from 1967 to 1975 (closed)

Singapore (Payalebar) - data from 1975 to 1989

Singapore (Changi) - data from 1989 onwards


Important Notes:



Values for 100 hPa from October 1967 are solely from Singapore (Changi).

Values for 100 hPa before October 1967 are from Kiribati (Canton Island) when available.

Detailed information about the radiosonde stations and their periods of operation is provided below.


Additional Information:



Access the data in other formats also published here: https://www.atmohub.kit.edu/english/807.php


Detailed List of Radiosonde Stations:












Station Name
Location (Lat, Lon)
Data Period
Pressure Levels (hPa)


Kiribati (Canton Island)
-2.7667, -171.7167
1953 - 1967 (closed)


Above 100 (until August 1967)

100 (until September 1967)



Maldives (Gan Island)
-0.6933, 73.1556
1967 - 1975 (closed)
Above 100 (September 1967 to December 1975)


Singapore (Payalebar)
1.3667, 103.9167
1975 - 1989
Above 100 (January 1976 to May 1989)


Singapore Upper Air Observatory
1.3404, 103.8879
1989 - present


100 (October 1967 to May 1989), 

All levels from June 1989
DOI: 10.5281/zenodo.15066656
title: HDMA bigwigs - Part 2

description: Bigwig tracks for each cell type in HDMA (Liu*, Jessa*, Kim*, Ng* et al, bioRxiv 2025). Includes the Macs2 p-value signal track for observed acessibility, the bias-corrected ChromBPNet-predicted accessibility, and base-resolution contribution scores. Predictions and contributions represent averages across folds per cell type. A detailed description of the main data types deposited on Zenodo can be found here.
DOI: 10.5281/zenodo.15066655
title: HDMA bigwigs - Part 2

description: Bigwig tracks for each cell type in HDMA (Liu*, Jessa*, Kim*, Ng* et al, bioRxiv 2025). Includes the Macs2 p-value signal track for observed acessibility, the bias-corrected ChromBPNet-predicted accessibility, and base-resolution contribution scores. Predictions and contributions represent averages across folds per cell type. A detailed description of the main data types deposited on Zenodo can be found here.
DOI: 10.15156/bio/sh1206345.10fu
title: SH1206345.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1206348.10fu
title: SH1206348.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1206352.10fu
title: SH1206352.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1206355.10fu
title: SH1206355.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1206357.10fu
title: SH1206357.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.