cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/nddgfyft7d.1
title: LPSmyocardiumpigs

description: Effects of LPS induced septic shock on myocardial energy metabolites in the pig Hypothesis: LPS induced septic shock cause energy deficiency in the myocardium Data show that LPS administration to pigs caused a decrease of medium- and short-chain fatty acid oxidation without an effect on long-chain fatty acid oxidation in the myocardium . Glucose oxidation was also decreased. Homeostasis of niacin, taurine, glutamate, glutamine, glutathione, hypoxanthine and thromboxane B2 was also affected in the septic myocardium. We show expression levels of several genes involved in myocardium metabolism measured by real time PCR as well as myocardial levels of different metabolites including acylcarnitines and eicosanoid. NMR and LC/MS were used to measure metabolites. Myocardial samples were obtained from control and LPS treated pigs. Data are shown in Excel
DOI: 10.17632/tvv9k7jpk2.1
title: Database on crop's yields, inputs use, prices and costs Spain

description: This dataset gather the information required for the full callibration of the farmers' land use decision models developed by Gómez et al, (2018) in the case of the Hellin Irrigation District in Spain. Original data comes from the Spanish Ministry of the Environment database ECREA (Study of the costs and income of agrarian exploitations) that cover all spanish irrigation districts.
DOI: 10.7910/dvn/2kx8gz/br2lgz
title: petitions.xlsx
DOI: 10.7910/dvn/ev1evh/fgbrnm
title: petitions.xlsx
DOI: 10.7910/dvn/ipmt8u/qpkbpn
title: petitions.xlsx
DOI: 10.7910/dvn/it0ts9/pitjjz
title: petitions.xlsx
DOI: 10.7910/dvn/kvlpz7/wx9uro
title: petitions.xlsx
DOI: 10.7910/dvn/pqauhb/vkot0k
title: petitions.xlsx
DOI: 10.7910/dvn/vqcapp/axyllr
title: petitions.xlsx
DOI: 10.17632/mn2m8h492c.1
title: 72cases of Cervical Dumbbell Schwannomas

description: MRI features may predict the resectability of cervical dumbbell schwannomas. Tumor size and level differed between subtotal and gross total resection (GTR). Vertebral artery (VA) involvement and signal intensity (SI) on T2-WI also differed. Tumor size, high cervical level, pushed/encased VA, and hyper-SI predicted GTR. Only high cervical level and encased VA predicted GTR in multivariate analyses.
DOI: 10.17632/ndtmckn5vh.1
title: Replication files for: "Commodity prices and labour market dynamics in small open economies"

description: The codes supplied allow replication of the figures and tables in "Commodity prices and labour market dynamics in small open economies." For details, we refer to the readme file. In order to run the programs you need to have: - Matlab (including optimization toolbox) - Dynare - IRIS toolbox
DOI: 10.17632/zshnj5c7v7.2
title: DIPPR-based prediction of the speed of sound

description: A set of routines for MATLAB/OCTAVE for predictive calculations of the speed of sound in pure organic liquids, used in the article published in Archives of Acoustics, 41 (2016), pp. 713–719, 2016 (the function sos.m) and its modified version (sosm.m) especially adjusted to n-alkanes (used in the article published in Archives of Acoustics, 43 (2018), pp. 537-541).
DOI: 10.7910/dvn/5r80sj/y4ownh
title: petitions.xlsx
DOI: 10.7910/dvn/bqfhfg/ph7twp
title: petitions.xlsx
DOI: 10.7910/dvn/gc2fzt/bimvom
title: petitions.xlsx
DOI: 10.7910/dvn/nllreb/sn7d8j
title: petitions.xlsx
DOI: 10.17632/bb96mh7pvd.1
title: Single Cell tracking of breast cancer cells enables the prediction of sphere formation from early cell divisions

description: We hypothesized that you could predict sphere formation using only information from early cell division. When analyzed, this data shows its possible to predict day 14 sphere formation at only 24 hours with 98% accuracy in these two cell lines. This data was gathered by visually tracking almost two thousand cells by eye over 14 days. This is the raw tracking data for the paper published under the same name as the description. It contains excel files of each individual cell that we followed by eye over the course of 14 days. The tables are set up to be easily understandable and labeled according to the wells of a 96 well plate. E.g. A1-12 etc .
DOI: 10.17632/c35cg3fst4.1
title: AUTOMATIC CORRECTION OF BAND BROADENING IN SEC / (DR+LS) OF NARROW HOMOPOLYMERS: THEORY AND EXPERIMENTAL VALIDATION (RAW DATA)

description: Chromatographic measurements obtained by injecting polystyrene and polymethyl-methacrylate standards into a size exclusion chromatography equipment made up of a series of fractionation columns, a DR detector, and a multi-angle LS detector.
DOI: 10.17632/j28hvzbyht.2
title: NEVs-DP Software Package

description: The NEVs-DP software is developed by Shanghai Jiao Tong University to solve the Dynamic Programming (DP) problems of New Energy Vehicles (NEVs). Specific algorithm principles, please refer to the two papers: [1] Dynamic Programming for New Energy Vehicles based on their work modes. Part I: Electric Vehicles and Hybrid Electric Vehicles. [2] Dynamic Programming for New Energy Vehicles based on their work modes. Part II: Fuel Cell Electric Vehicles.
DOI: 10.17632/mgsb8pcsjp.2
title: MRI characteristics and extent of tumor removal in cervical dumbbell-shaped schwannomas

description: Data of 72 patients who underwent surgical treatment for cervical dumbbell-shaped schwannomas were retrospectively reviewed. Tumor level (p = 0.009, Pearson’s chi-square test), VA involvement (p &lt; 0.001, linear-by-linear association test), and SI on T2-weighted images (T2-WIs) (p = 0.006, Fisher’s exact test) were statistically significantly different between the GTR and STR groups. Univariate analysis demonstrated that upper level (odds ratio [OR] 4.00, 95% confidence interval [CI] 1.50-10.69; p = 0.006), pushed VA (OR 0.11, 95% CI 0.03-0.45; p = 0.002), encased VA (OR 0.02, 95% CI 0.01-0.14; p &lt; 0.001), and Hyper-SI on T2-WI (OR 12.46, 95% CI 1.49-104.51; p = 0.020) were significant predictors for GTR.
DOI: 10.17632/tmt3fmmn9m.1
title: High risk of obstructive sleep apnea - Hospital

description: The clinical records of the patients complying with the selection criteria were reviewed. Socio-demographic data (age, sex, education level, marital status), medical data (past medical history, current medication, and bad habits) were collected, a general physical examination (body weight, height, body mass index, cervical and abdominal circumference), and an otorhinolaryngological examination were performed (septum deviation, turbinate hypertrophy, tonsil size, Friedman tongue position, size and shape of the uvula and palate, and Angle classification). Additionally, the results of Epworth and Berlin questionnaires were compiled, which are part of the routine assessment. These instruments are administered to all patients whatever the reason why they may come to the clinic. We use the Epworth Sleepiness Scale, Peruvian version (22), with a value more than 10 indicating somnolence, and the Berlin questionnaire in its Spanish version (23), which indicates a high risk for the OSA syndrome when it shows two or more out of three positive categories
DOI: 10.17632/xhrjsbwg92.1
title: Baghdadi_Cell Stem Cell_D-17-00836_2018

description: Supplementary Movie 1: Related to Fig. 3C and D Cell trajectories of a 48h time-lapse movie of membrane-GFP positive cells isolated from resting muscle of Tg:Pax7-CT2;R26mTmG mice transfected immediately after FACS with Scramble control (top) or Mimic-708 (bottom). Images were taken every 13min. Scale bar: 50μm. Supplementary Movie 2 and 3: Related to Fig. 3E and F 2-Photon live videomicroscopy on Extensor digitorium longus muscle of Scramble-treated mice (10days post-injection). Representative zoom on cells showing no cell displacement over 12h. Images were taken every 30min. Supplementary Movie 4 and 5: Related to Fig. 3E and F 2-Photon live videomicroscopy on Extensor digitorium longus muscle of AntagomiR-treated mice (10days post injection). Representative zoom on cells showing spontaneous displacement and exit from niche following miR-708 knock-down in vivo. Images were taken every 30min. Supplementary Movie 6: Related to Fig. 3J Cell trajectory of primary satellite cells overexpressing miR-708 (Mimic) only or both miR-708 and TNS3. Overexpression of TNS3 was sufficient to rescue the inhibition of migration mitigated by mir-708. Images were taken every 10min for 20h. Supplementary Movie 7: Related to Fig. 4F-H Videomicroscopy of a Fucci-green-positive cell isolated from resting muscle and transfected 24h after FACS with Scramble control (top) or Mimic-708 (bottom). Images were taken every 13min for 25h.
DOI: 10.5281/zenodo.1420394
title: Synthetic Meshes Of Hippocampi, For Statistical Shape Analysis Validation

description: Those synthetic data have been generated for the validation of the iterative centroid method published in "Statistical shape analysis of large datasets based on diffeomorphic iterative centroids", which code can be found here: https://github.com/cclairec/Iterative_Centroid

The 50 random populations are all generated from a same shape S0. We generated random deformations around S0 and symmetrised the deformations, so the centre of the populations is S0. More details in the paper.

Each data set is composed by 50 shapes. The Matlab files contain:

- moment: The initial momentum vector used to generate each subject of the population

- SkelSuj_Rigid: The first line contains the vertices and faces of each subject. The second line contains the parameters to generate the initial momentum vectors and the subjects.
DOI: 10.5281/zenodo.1420395
title: Synthetic Meshes Of Hippocampi, For Statistical Shape Analysis Validation

description: Those synthetic data have been generated for the validation of the iterative centroid method published in "Statistical shape analysis of large datasets based on diffeomorphic iterative centroids", which code can be found here: https://github.com/cclairec/Iterative_Centroid

The 50 random populations are all generated from a same shape S0. We generated random deformations around S0 and symmetrised the deformations, so the centre of the populations is S0. More details in the paper.

Each data set is composed by 50 shapes. The Matlab files contain:

- moment: The initial momentum vector used to generate each subject of the population

- SkelSuj_Rigid: The first line contains the vertices and faces of each subject. The second line contains the parameters to generate the initial momentum vectors and the subjects.
DOI: 10.7910/dvn/24gafr/hqbtls
title: petitions.xlsx
DOI: 10.7910/dvn/7o8dnf/jv7wba
title: petitions.xlsx
DOI: 10.7910/dvn/9q1ce0/xrx5jc
title: petitions.xlsx
DOI: 10.7910/dvn/bzfjcy/gkymyn
title: petitions.xlsx
DOI: 10.7910/dvn/kddxgi/ljkmiu
title: petitions.xlsx
DOI: 10.17632/42tkdb87bf.1
title: SSI in Cesarean Delivery with CHG Data

description: This process improvement (PI) project was designed to determine whether surgical irrigation with a 0.05% CHG solution would reduce the number of Surgical Site Infections (SSI) following Cesarean Delivery (CD) at a 150-bed community hospital in San Antonio, TX. The control period was defined as Dec 2013 through Nov 2014 and the treatment period was between Dec 2014 and Nov 2015. All CD were performed by one of eleven physicians practicing at the facility. All data collected during both the control and the treatments cohorts was collected prospectively. There were no exclusions. The primary outcome was the presence or absence of post-cesarean SSI. The intervention used as the treatment was irrigation with 0.05% CHG in sterile water followed by a normal saline rinse. Treatment period SSI numbers were compared with SSI numbers among women who underwent CD by the same group of physicians during the control period. During the control period, in which there was no official irrigation protocol, the practice, if performed, was done with normal saline. Prospective data from the control period, including all patient and procedure characteristics, were tracked during the treatment period and extracted from EMRs by the women services’ management team. Cross-checks were done to verify accuracy. All patients were evaluated for infection using the CDC criteria for superficial, deep, and organ space SSI. The treatment group SSI rate was slightly lower (1.5% [5/343]) than the control group (1.8% [7/399]), but this was not statistically significant (p=0.780). Multiple logistic regression analysis revealed race Hisp/Latino and non-elective/urgent/emergent status as positive predictors of SSI. A significant interaction effect between irrigation with 0.05% CHG and antibiotic administration time (AAT) existed such that SSI occurrence in the control group was dependent on AAT (each additional minute between administration and incision lowering odds for SSI) while SSI occurrence in the treatment group was not dependent on AAT. The model indicates that AAT explains a portion of the protective effect against SSI occurrence, but only in the control group. Thus, treatment (0.05% CHG irrigation) is the effective factor in mitigating SSI risk in the treatment group, regardless of AAT. These results are consistent with subset correlation and simple logistic regression analyses. AAT was shown to be negatively correlated with SSI occurrence (lower time related to SSI) in the control subset only (r=-0.131, p-value=0.010), while no correlation was shown between AAT and SSI occurrence in the treatment subset only (r=-0.009, p=0.863). In subset simple logistic regression analysis, AAT was the only significant predictor (p-value=0.010) of SSI in the control subset, while it held no significance in predicting SSI in the treatment subset (p-0.372). This suggests a role for 0.05% CHG irrigation in mitigating SSI risk whether antibiotic prophylaxis timing is suboptimal or ideal.
DOI: 10.17632/fdbj8wz8cm.1
title: Climatological simulations of seawater pCO2 and air-sea CO2 fluxes.

description: The outputs of the low and high-resolution control simulations, 1/6° and 1/12°, respectively, consist of two NetCDF files containing twelve maps representing monthly means of seawater pCO2, air-sea CO2 fluxes (Flux), CO2 solubility (Kzero), and CO2 transfer velocity (Kw). Associated state variables are also included, such as surface dissolved inorganic carbon (DIC), alkalinity (Alk), temperature (SST), and salinity (SSS).
DOI: 10.17632/y49w92dzh3.1
title: Exchange traded green bonds

description: This dataset has been prepared by Szilárd Erhart for a research paper on exchange traded green bonds. EXCHANGE TRADED GREEN BONDS http://www.thejei.com/exchange-traded-green-bonds_szilard-erhart/ Abstract The goal of this paper is to take stock of achievements made by five green bond exchanges in Europe (Borsa Italiana – Milano, London Stock Exchange, Luxembourg Stock Exchange, Nasdaq Stockholm, Oslo Børs). Green bond listings are an integral part of the Sustainable Stock Exchanges (SSE) Initiative, and the European Commission’s Sustainable Finance Action Plan has recently acknowledged their key role. This paper introduces the role of exchanges in green finance, reports on the EU’s sustainable finance strategy development, investigates the “green listing requirements” and provides statistical insights into listed green bond markets (number and value of traded bonds, average issue value, maturity of bonds, redemption structure and trading volumes, currency structure, etc.). To aggregate and concentrate the information of our statistical analysis and measure green performance, we prepared simple rankings of green exchanges on the basis of the indicators used in the analysis. http://dx.doi.org/10.17632/y49w92dzh3.1#file-d20e8edd-8e6b-42b8-8494-bbf061ec106e The author takes no responsibility for the timeliness, accuracy, completeness or quality of the information provided. The author is in no event liable for damages of any kind incurred or suffered as a result of the use or non-use of the information presented or the use of defective or incomplete information . The contents are subject to confirmation and not binding. The author expressly reserves the right to alter, amend , whole and in part, without prior notice or to discontinue publication for a period of time or even completely. Comments and questions: szilard.erhart@ec.europa.eu or szilard.erhart@gmail com.
DOI: 10.17632/zv7mzsrd5r.1
title: N.G.Brady et al. SAXS Data of SMA Copolymers in Solution

description: Over the past decade, Styrene Maleic Acid Alternating Copolymers (SMA) have gained interest as an alternative to detergent solubilization for the isolation of membrane bound proteins. During the canonical method of membrane solubilization via surfactant-lipid exchange, detergents have been shown to replace membrane lipids peripheral and interior to membrane bound proteins [1]. For both the investigation of the proteolipid interface and the retention of native activity in vitro, the formation of SMA lipid particles (SMALPs) presents a novel opportunity to isolate the proximal membrane environment, encompassing and throughout membrane proteins in vitro. The mechanism by which SMA associates with the membrane resulting in SMALPs is unknown, leading to SMAs of differing physicochemical properties (styrene:maleic acid ratio and length of copolymer fragments) being reported as optimum for extraction of various membrane proteins. The coordinated supramolecular assembly of SMA amphiphilic copolymers free in solution has yet to be elucidated over a range of environmental conditions, which may be pertinent to the underlying mechanism of protein extraction by this method. This study investigates the shape and size of diverse SMA aggregates in solution at various pH, ionic strength, concentration and temperature, analyzed by small angle X-ray scattering. The SMA supramolecular aggregates exhibit similar prolate ellipsoidal geometry of varying size, dependent on the degree of hydrophobicity of the SMA copolymer. At elevated pH and temperature, particles composed of SMAs enriched in styrene undergo elongation at the poles, increasing in maximum particle diameter. The magnitude of this effect increases proportional to increasing length of the SMA copolymer fragments. Included here is all raw data for SAXS curves, Guinier approximation and distance distribution analyses.
DOI: 10.21227/q8g6-s494
title: Supplementary material

description: Supplementary material for article "An Efficient Meta-Heuristic for Multi-objective Flexible Job Shop Inverse Scheduling Problem"
DOI: 10.7910/dvn/hsl0wv/mldpfm
title: petitions.xlsx
DOI: 10.7910/dvn/krndwp/cgk0kn
title: petitions.xlsx
DOI: 10.7910/dvn/lc55rk/cmpllr
title: petitions.xlsx
DOI: 10.7910/dvn/qyhyvg/6g27xj
title: petitions.xlsx
DOI: 10.7910/dvn/zayjir/26znsf
title: petitions.xlsx
DOI: 10.17632/7k4kpcrnf5.1
title: Use of adsorbent mixtures to mitigate membrane fouling and remove NOM with microgranular adsorptive filtration

description: This study investigated the removal of natural organic matter (NOM) from water, and in particular the NOM responsible for membrane fouling, by treatment with a mixture of heated aluminum oxide particles (HAOPs) and powdered activated carbon (PAC) in both batch and microgranular adsorptive filtration (µGAF) reactors. In batch reactors, increasing the portion of HAOPs in the adsorbent mixture led to a steady increase in fouling when the pretreated water was applied to a UF membrane. By contrast, when the water was pretreated with the same adsorbent mixtures in a µGAF reactor, increasing the portion of HAOPs led to a steady and dramatic decline in membrane fouling. The opposing trends in fouling in the two reactor types tracked the trends for removal of the biopolymer fraction of the NOM. When the feed water is pretreated in batch reactors, fouling is mitigated by adsorption of some of the foulants on each adsorbent, with PAC collecting the foulants more effectively than HAOPs do. However, when pretreatment is carried out in µGAF reactors, foulant removal is enhanced by formation of the gel on the tightly packed adsorbent particles in the µGAF layer. That removal mechanism is apparently much more effective on HAOPs than on PAC, so that a HAOPs-rich µGAF layer removes more foulant (and a larger fraction of the disinfection byproduct formation potential [DBPFP]) than a PAC-rich layer does. Generalizing this result, it appears that using mixtures of adsorbents in µGAF reactors could have significant advantages over more conventional pretreatment approaches in which a single adsorbent is applied in a well-mixed reactor. Sheet 1 (labeled as Figure 2) includes data for removal of NOM from Lake Union water by batch or µGAF treatment with mixtures of HAOPs and PAC at a fixed total (effective) adsorbent dose of 20mg/l. Sheet 2 (labeled as Figure 3) presents TMP profiles for ultrafiltration membranes fed LU water batch-pretreated with mixtures of HAOPs and PAC. Total adsorbent dose: 20 mg/l, Flux=100 LMH. Sheet 3 (labeled as Figure 4a) presents data for pressure increase across μGAF units with different proportions of HAOPs and PAC in the pre-deposited layer; Flux = 150 LMH. Sheet 4 (labeled as Figure 4b) presents TMP increase across UF membranes fed composite permeate from various upstream μGAF units; Flux = 100 LMH Sheet 5 (labeled as Figure 6) presents SEC chromatogram data of raw and pretreated LU water samples.
DOI: 10.17632/hygyrwftg9.1
title: A Neural Circuit for Gut-Induced Reward

description: The gut is now recognized as a major regulator of motivational and emotional states. However, the relevant gut-brain neuronal circuitry remains unknown. We show that optical activation of gut-innervating vagal sensory neurons recapitulates the hallmark effects of stimulating brain reward neurons. Specifically, right, but not left, vagal sensory ganglion activation sustained self-stimulation behavior, conditioned both flavor and place preferences, and induced dopamine release from Substantia nigra. Cell-specific transneuronal tracing revealed asymmetric ascending pathways of vagal origin throughout the CNS. In particular, transneuronal labeling identified the glutamatergic neurons of the dorsolateral parabrachial region as the obligatory relay linking the right vagal sensory ganglion to dopamine cells in Substantia nigra. Consistently, optical activation of parabrachio-nigral projections replicated the rewarding effects of right vagus excitation. Our findings establish the vagal gut-to-brain axis as an integral component of the neuronal reward pathway. They also suggest novel vagal stimulation approaches to affective disorders.
DOI: 10.17632/pgr2hc2d9k.1
title: Alterations in structural and functional responses of bacterial community in response to different levels of compost application in long term fertilized paddy ecosystems

description: In this study, we used pyro-sequencing tags between V1-V3 regions of the 16S rRNA gene to analyse and compare the effect of long term application of different compost levels on the composition of paddy soil bacterial communities. The treatments were (i) inorganic nitrogen (N), phosphorus (P) and potassium (K) fertilizers (NPK) (ii) NPK and organic compost (C) (NPKC750) (iii) NPKC1500 (iv) NPKC2250 (v) NPKC3000. Inorganic chemical fertilizer was applied as N–P2O5–K2O at a rate of 75-75-75 kg ha-1 from 1954-1970, 100-75-75 kg ha-1 from 1971-1978, 150-86-86 kg ha-1 from 1978-1985 and 110-70-80 kg ha-1 from 1986 onwards. Organic compost was prepared by fermenting rice straws for 5 months and then applied at 7.5, 15.0, 22.5 and 30.0 Mg ha-1 in the NPKC750, NPKC1500, NPKC2250 and NPKC3000 soils, respectively.