cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12966665.v1
title: Supplementary Material for: Reproducibility and Interobserver Agreement of Different Thyroid Imaging and Reporting Data Systems (TIRADS)

description: <b><i>Introduction:</i></b> A number of classification systems (TIRADS) have been developed to estimate the likelihood of malignancy in thyroid nodules, but their reproducibility is yet to be assessed. We evaluated the interobserver variability and diagnostic performance of the TIRADS in Kwak’s modification (Kw-TIRADS) and European TIRADS (EU-TIRADS). <b><i>Methods:</i></b> Two independent specialists, blinded concerning the morphology of the nodules, evaluated ultrasound images of 153 thyroid nodules identified in 149 patients at multiple time points. <b><i>Results:</i></b> The interobserver agreement (Cohen’s κ) was 0.52 and 0.67 for Kw-TIRADS and EU-TIRADS, respectively, and rated as substantial. There were strong correlations between Kw-TIRADS and EU-TIRADS for the two observers with Spearman’s coefficients of 0.731 (<i>p</i> = 0.00025) and 0.661 (<i>p</i> = 0.0012), respectively. Sensitivity of Kw-TIRADS for the diagnosis of thyroid cancer was 95–92.31% and that of EU-TIRADS was 92.31–89.74%, with specificity of about 60% for both TIRADS. <b><i>Conclusion:</i></b> Despite the wide variability in the description of single ultrasonographic features, both Kw-TIRADS and EU-TIRADS may be a useful diagnostic tool in clinical practice.
DOI: 10.6084/m9.figshare.16622104.v1
title: Supplementary Material for: Autopsy-Based Pulmonary and Vascular Pathology: Pulmonary Endotheliitis and Multi-Organ Involvement in COVID-19 Associated Deaths

description: <b><i>Background:</i></b> Findings from autopsies have provided evidence on systemic microvascular damage as one of the underlying mechanisms of Coronavirus disease 2019 (CO­VID-19). The aim of this study was to correlate autopsy-based cause of death in SARS-CoV-2, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) positive patients with chest imaging and severity grade of pulmonary and systemic morphological vascular pathology. <b><i>Methods:</i></b> Fifteen SARS-CoV-2 positive autopsies with clinically distinct presentations (age 22–89 years) were retrospectively analyzed with focus on vascular, thromboembolic, and ischemic changes in pulmonary and in extrapulmonary sites. Eight patients died due to COVID-19 associated respiratory failure with diffuse alveolar damage in various stages and/or multi-organ failure, whereas other reasons such as cardiac decompensation, complication of malignant tumors, or septic shock were the cause of death in 7 further patients. The severity of gross and histopathological changes was semi-quantitatively scored as 0 (absent), 1 (mild), and 3 (severe). Severity scores between the 2 groups were correlated with selected clinical parameters, initial chest imaging, autopsy-based cause of death, and compared using Pearson χ<sup>2</sup> and Mann-Whitney U tests. <b><i>Results:</i></b> Severe pulmonary endotheliitis (<i>p</i> = 0.031, <i>p</i> = 0.029) and multi-organ involvement (<i>p</i> = 0.026, <i>p</i> = 0.006) correlated significantly with COVID-19 associated death. Pulmonary microthrombi showed limited statistical correlation, while tissue necrosis, gross pulmonary embolism, and bacterial superinfection did not differentiate the 2 study groups. Chest imaging at hospital admission did not differ either. <b><i>Conclusions:</i></b> Extensive pulmonary endotheliitis and multi-organ involvement are characteristic autopsy features in fatal CO­VID-19 associated deaths. Thromboembolic and ischemic events and bacterial superinfections occur frequently in SARS-CoV-2 infection independently of outcome.
DOI: 10.6084/m9.figshare.21564164.v1
title: Additional file 9 of The phylogeny of Seseli (Apiaceae, Apioideae): insights from molecular and morphological data

description: Additional file 9: Table S8. Morphological data of the taxa belonging to the “S. tortuosum” and “S. gummiferum” clade.
DOI: 10.6084/m9.figshare.23540478.v1
title: data of NDD2 genome-relate, and sv

description: genome annotation of NDD2；
SNPs of 547 accessions;
SVs of 547 accessions;
DOI: 10.17632/xndn8k33p5
title: Replication - Koenig and Poncet - JIE The effects of the Rana Plaza collapse on the sourcing choices of French importers

description: This folder contains all do files necessary to replicate the results from the article "The effects of the Rana Plaza collapse on the sourcing choices of French importers" by Pamina Koenig and Sandra Poncet, Journal of International Economics, 2022.

The archive contains a number of Stata do files necessary for replicating the regression results in the above mentioned article. 
Step 1: Read the ReadMe file. 
Step 2: use the master.do which is the main do file that lists all steps needed, with corresponding intermediary do files.
DOI: 10.6084/m9.figshare.1533042.v2
title: 3- Airport Mobile Access and Mobile Apps - DATASET

description: Data used on the Paper: Martin-Domingo, L., & Martin, J. C. (2015). Airport Surface Access and Mobile Apps. Journal of Airline and Airport Management, 5(1), 1–17. http://doi.org/10.3926/jairm.38
DOI: 10.6084/m9.figshare.3793395.v1
title: Update of distribution, habitats, population size, and threat factors for the West African crocodile in Mauritania

description: The West African crocodile (<i>Crocodylus suchus</i>) is an emblematic species from the Sahara-Sahel with scarce knowledge on distribution and conservation status. This study updated the knowledge on distribution, occupied habitats, population size, and factors that threaten <i>C. suchus </i>and its habitats in Mauritania. Five field expeditions to Mauritania (2011-2016), allowed the detection of 26 new localities, increasing by 27% the current number of all known locations (adding up to <i>N </i>= 96). In most localities less than five individuals were observed, and in all visiting sites the number of observed individuals ranged from one to 23. Eleven threat factors were identified, being droughts and temperature extremes (100% localities affected) and water abstraction for domestic use and nomadic grazing (94%) the most frequent. These findings suggest that crocodiles are apparently vulnerable in Mauritania and that future local conservation strategies are needed to assure the continuity of its fragile populations and preserve their habitats.
DOI: 10.17632/m5phbmw43c
title: Variantion dataset of papaya

description: The VCF files contained all of cleaned SNPs and small InDels across the whole genome in Papaya population.
DOI: 10.17632/zdmn5w6zw7
title: Self-stabilization of barchan dune chasing

description: Barchan dunes are often found in a variety of environments. They exhibit group-like self-stabilizing characteristics when interacting with each other. Under the premise of local similarity, water tunnel experiments have been widely used to study the fascinating dune interactions, especially contact interactions, i.e., collisions; however, non-contact interactions (i.e., chasing) and the fluid mechanisms behind them have not been studied sufficiently. To bridge this gap, we performed water tunnel experiments combined with numerical simulations to demonstrate the flow structure around two chasing dunes. Our results suggest that the distance between two dunes may become stable due to a combination of three factors: repulsion effect between the two dunes, which widens the distance, and impediment to downstream dune movement, embracing effect which shrinks the distance, and the difference in dune size, whose specific effect depends on the relative position of the two dunes. The first two factors are achieved by two special vortex structures. Based on this model, we propose a scaling law to describe the equilibrium of the dune chasing and a governing equation to explain the breakdown of such equilibrium, and they are both experimentally verified. Our model provides a framework to explain the self-stabilizing mechanisms of barchan dune swarms. The supporting information contains eight movies and their accompanying images as examples of our experiments, as well as the raw data of the dune distance over time of all the tests.
DOI: 10.6084/m9.figshare.22638650.v1
title: Hydrologic and hydraulic modeling to assess the efficiency of structural flood control measures: case study of Audi-União District in the city of Curitiba, Brazil

description: Abstract The objective of this study is to assess the efficiency of flood control measures implemented in the Audi-União District, located on the Iguaçu River floodplain in the city of Curitiba, Brazil, by the application of hydrological-hydraulic modeling using HEC-HMS and HEC-RAS software packages. The scenarios of the years of 2014, 2024 and 2034 with return periods of 10, 25, 50 and 100 years were analyzed. It was observed that the set of hydraulic structures located upstream of Audi-União District can reduce the peak flow at the beginning of the Iguaçu River by 31.4% and the flood area by 35.1%, considering the period of return of 100 years and the land use of 2014. Regarding the measures implemented directly by the Audi-União District, it was observed that the built levee can control floods in the area, except for a small area that is not protected by the levee, in both 2014 and future scenarios. The creation of the Iguaçu Environmental Protection Area and the relocation of families, which were non-structural measures implemented in the region, also proved to be efficient, considering that these areas would suffer from flooding even for rainfall events with a period of return of 10 years.
DOI: 10.6084/m9.figshare.6177110.v1
title: Carotenoid presence is associated with the Or gene in domesticated carrot

description: Supplementary data sets and tables for the manuscript "Carotenoid presence is associated with the Or gene in domesticated carrot."<br>
DOI: 10.6084/m9.figshare.648488.v1
title: CIL:1679

description: The purpose of the dataset C. elegans terminal bulb aging is to deduce the age of the nemathode based on images of the pharynx terminal bulb (part of the eating apparatus). Images of C. elegans were taken at different chronological ages. This image is part of the day 0 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
DOI: 10.17632/363yxf6d9s
title: Data Set - Pose Alzheimer Patients

description: La recolección de datos llevó un proceso que se centra en los pacientes de Alzheimer los mismos que fueron grabados con una cámara de video en circunstancias cotidianas en las que a diario se encuentran estas personas. 
La información se encuentra en un documento de Excel con los campos de: Inicio, Tiempo de procesamiento, Tiempo, Pose, Estado, Escena; de estos parámetros los más relevantes son Escena y Estado que poseen la estructura esencial para el estudio de investigación.
DOI: 10.17632/gbbts3dn62
title: Data for: Seismic anisotropy beneath the eastern margin of the Tibetan Plateau from SKS splitting observations

description: This study collects a nearly uniformly distributed seismic array of 512 stations, consisting of four sub-arrays as color-coded in Fig. 1b. Among them, 249 stations are from the Chuanxi Array deployed from October 2006 to July 2009 (Liu et al., 2014); 99 are from permanent China National-backbone stations with data corrected from 2013 to 2017; 168 are from the ChinArray deployed from 2013 to 2016; 25 are from a mobile broadband seismic array deployed in the SCB from 2014 to 2016 by our own research group.
DOI: 10.17632/gpvchbtrdm
title: Data for: Manufacturing Cost Model for Planar 5 kWel SOFC Stacks at Forschungszentrum Jülich

description: Detailed spread sheets of manufacturing cost for the various production volumes, sensitivity analyses.
DOI: 10.6084/m9.figshare.20780419.v2
title: Supplementary data

description: Supplementary data for a research artile "A highly contiguous genome assembly of red perilla (<em>Perilla frutescens</em>) domesticated in Japan". <strong>Supplementary Table S1.</strong> Source of protein-level functional annotation of Pfru_yukari_1.0. <strong>Supplementary</strong> <strong>Table S2.</strong> Statistics of the contigs generated by Hifiasm. <strong>Supplementary</strong> <strong>Table S3.</strong> AGP file (scaffolds_FINAL.agp) generated by SALSA2 describing the contig assignment of each scaffold. <strong>Supplementary</strong> <strong>Table S4.</strong> Length and the components of 20 pseudochromosomes. <strong>Supplementary</strong> <strong>Table S5.</strong> Summary of the gene annotation of each of the three methods. <strong>Supplementary</strong> <strong>Table S6.</strong> The GGSERACH results corresponds to the identified genes in Figure 3. <strong>Supplementary</strong> <strong>Figure S1.</strong> Merqury assembly spectrum plots of haplotype 1 (hap1) and haplotype 2 (hap2). <strong>Supplementary</strong> <strong>Figure S2.</strong> Dot-plot alignment between the draft scaffolds (indicated as “s”) (longest 25 scaffolds; scaffold_1–25) and reference PF40 genome assembly. Blue dots represent +/+ strand alignments and red dots represent +/- strand alignments. <strong>Supplementary</strong> <strong>Figure S3.</strong> Hi-C contact map of the draft scaffolds (indicated as “s”) generated by SALSA2.
DOI: 10.6084/m9.figshare.26501320.v1
title: Effect of exogenous melatonin on performance and mastitis in dairy cows raw data

description: We believe that our study makes a significant contribution to the literature because we found that the somatic cell count of the cows in the trialgroup showed significant reduction in different periods of time, in terms of production performance, the cows in the T120 group during melatonin feeding significantly increased milk milk fat percentage, milk fat yield, milk protein percentage and milk protein yield, respectively. In terms of serum biochemical indices, the cows in the T120 group during melatonin feeding had significant effects on total protein, albumin and globulin content. In addition, melatonin had a significant effect on cows in terms of antioxidant capacity and anti-inflammatory capacity. Finally, exogenous melatonin had a positive effect on blood melatonin levels in dairy cows.Further, we believe that this paper will be of interest to the readership of your journal because our results demonstrate thatsupplementationof exogenous melatonin to dairy cattle rations reduces milk somatic cell count and improves milk quality, cow antioxidant capacity, anti-inflammatory capacity, and blood melatonin content. Our findings will be insightful for farming and agriculture experts as they provide new insights for the healthy breeding of ruminants.
DOI: 10.6084/m9.figshare.27000640.v1
title: Additional file 2 of Equity considerations for the implementation of health insurance benefit package in Ethiopia: result of expert Delphi exercise

description: Supplementary Material 2
DOI: 10.17632/x62jn3x6cs
title: A Discrete Element Method based-approach for arched masonry structures under blast loads

description: Masonry structures are often characterized by complex, non-planar geometries. This is also the case for historical and monumental structures. Here we investigate the dynamic behaviour of non-standard, curvilinear masonry geometries, such as vaults, subjected to blast loading. We use the Discrete Element Method (DEM) for modelling the dynamic structural response to explosions. The approach allows considering the detailed mechanical and geometrical characteristics of masonry, as well as the inherent coupling between the in- and out-of-plane motion. The proposed modelling approach is validated with existing experimental tests in the case of planar masonry geometries, walls. The DEM model well captures the dynamic response of the system and the form of failure within the masonry structure. Then the response of a curved masonry structure subjected to blast loading is investigated. The influence of various micro-mechanical parameters, such as the dilatancy angle, the tensile strength and the cohesion of the masonry joints on the overall dynamic structural response of the system is explored. The effect of the size of the building blocks is also studied. Finally, the common DEM assumption of rigid blocks is assessed through detailed comparisons with simulations involving deformable blocks.
DOI: 10.6084/m9.figshare.12163545.v2
title: GTT-1-protein-281.dcdWW domain trajectories

description: Trajectories of ww domainTrajectories dataTrajectories of WW domain
DOI: 10.6084/m9.figshare.18002759.v1
title: 改进IEEE 33节点系统参数

description: IEEE system parameter
DOI: 10.6084/m9.figshare.28381769.v1
title: Generative artificial intelligence

description: We collected 612 valid questionnaire responses from individuals who had used GAI chatbots.
DOI: 10.17632/5f2xsfyckv
title: Bio-Waste Management

description: Effective BWM is essential for preserving urban hygiene and advancing environmental objectives in smart city settings. The fast development of bio-waste frequently outpaces the capabilities of conventional waste treatment techniques, resulting in inefficiencies and problems with the environment. This research suggests a unique strategy that uses sophisticated predictive analytics to improve the handling of waste to solve these issues. Cities may enhance recycling procedures, schedule waste pickup more efficiently, and anticipate waste creation more precisely with this strategy. The proposed solution combines reliable predictive analytics with real-time trash detection to overcome the drawbacks of conventional waste management techniques. This combination results in lower operating costs, improved distribution of resources, and increased forecast accuracy. Use of YOLOv8-SPP in predictive analytics is a noteworthy development in BWM, resulting in smart city operations that are more sustainable and efficient.
DOI: 10.17632/snffc3wvfp
title: Dataset for "Barchan dunes cruising dune-size obstacles" 

description: This is part of the data concerning experiments on barchans interacting with an obstacle. Here, you find images, animated movies and a table for all tests.
DOI: 10.6084/m9.figshare.22006535.v1
title: AI & Higher Education

description: AI attitudes and education
DOI: 10.6084/m9.figshare.22699408.v3
title: Hepatic SREBP signaling requires SPRING to govern systemic lipid metabolism in mice and humans

description: The sterol regulatory element binding proteins (SREBPs) are transcription factors that govern cholesterol and fatty acid metabolism. Owing to their central role in hepatic lipid and lipoprotein metabolism their activity is tightly coordinated, and accordingly, dysregulation of the SREBP pathway is associated with the development of, amongst others, cardiovascular and non-alcohol fatty liver disease. Constitutive or inducible global ablation of <em>Spring </em>in mice is lethal, and therefore to interrogate the physiological role of SPRING in hepatic lipid metabolism we developed liver-specific <em>Spring </em>knockout mice (LKO). In the liver of those mice, shotgun proteomics was assessed in n=6 (pooled together n=3 for each genotype) and injected twice in Dionex Ultimate 3000 nano-LC system (Sunnyvale CA, USA) connected to an orbitrap Fusion™ Tribrid™ Mass Spectrometer (Thermo Scientific, Bremen, Germany) equipped with a nano-electrospray ion source operating in positive ion mode. <br> <br>
DOI: 10.6084/m9.figshare.28225754.v4
title: Influence of Solar Extreme Ultraviolet Radiations on Ground-based VLF Transmitter Waves in Near-Earth Space

description: These data are plotted as Figures 2 - S1 in the paper "Influence of Solar Extreme Ultraviolet Radiations on Ground-based VLF Transmitter Waves in Near-Earth Space".
DOI: 10.6084/m9.figshare.3519278.v1
title: Appendix C. A table detailing the literature database.

description: A table detailing the literature database.
DOI: 10.17632/msrhyv489k
title: Customers' Problems with Electricity Distribution in Delta State Nigeria

description: This data set captures the problems faced by electricity customers in Delta, State Nigeria. The data was collected by means of a well structured questionnaire that was implemented by well trained interviewers in a field survey. Nigeria is currently bedeviled by a plethora of problems especially in the distribution aspect of the power sector. The data set captures data in both urban and rural areas of Delta State cutting across the three Senatorial Districts. Local Government Headquarters were designated as urban areas whiles villages were taken as rural areas. The data contains information on customers biodata and their experiences with the services of their electricity distribution company. The data set also contains information about the observed problems with the services of the distribution company, Respondents in the survey were asked to score positive statements bordering on their experience with the distribution company on a five-point scale indicating their experience with the distribution company. Respondents were also required to score observed problems with the services of the distribution company on a scare of 0 to 10 inclusive depending on the severity of the problem. A score of zero meaning that the problems in limited while a score of 10 means that the problem is severe, The data set are presented in two different formats i.e. Microsoft Excel and IBM SPSS database format.
DOI: 10.6084/m9.figshare.25824205.v2
title: 3D Space Obj

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