cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12324782.v1
title: Additional file 4 of What approaches exist to evaluate the effectiveness of UK-relevant natural flood management measures? A systematic map protocol

description: Additional file 4. ROSES for systematic map protocol. This file follows the ROSES flow diagram and outlines the review documentation.
DOI: 10.6084/m9.figshare.12324788.v1
title: Additional file 5 of What approaches exist to evaluate the effectiveness of UK-relevant natural flood management measures? A systematic map protocol

description: Additional file 5. Systematic map coding descriptions. This file provides details of how screened articles will be coded with a set of standardised codes relating to the systematic map questions.
DOI: 10.6084/m9.figshare.12324776
title: Additional file 3 of What approaches exist to evaluate the effectiveness of UK-relevant natural flood management measures? A systematic map protocol

description: Additional file 3. Test list and assessment of test list against the search string. This file provides details of the test list of articles used to assess the search string, and also provides the assessment of the search string against the test list.
DOI: 10.6084/m9.figshare.12324776.v1
title: Additional file 3 of What approaches exist to evaluate the effectiveness of UK-relevant natural flood management measures? A systematic map protocol

description: Additional file 3. Test list and assessment of test list against the search string. This file provides details of the test list of articles used to assess the search string, and also provides the assessment of the search string against the test list.
DOI: 10.6084/m9.figshare.12324779.v1
title: Additional file 2 of Protection from DNA re-methylation by transcription factors in primordial germ cells and pre-implantation embryos can explain trans-generational epigenetic inheritance

description: Additional file 2: Table S1. TFs whose motifs are enriched at E14.5m PGC DNAse-Hi sites that are expressed in E16.5m PGCs based on RNA-seq.
DOI: 10.6084/m9.figshare.12324584
title: Additional file 3 of Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site

description: Additional file 3: Table S3. Average nucleotide identity of MAGs retrieved from the Cabin Branch metagenomes.
DOI: 10.6084/m9.figshare.12324578
title: Additional file 2 of Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site

description: Additional file 2: Table S2. Sequencing and assembly statistics for metagenomes used in this research.
DOI: 10.6084/m9.figshare.12324584.v1
title: Additional file 3 of Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site

description: Additional file 3: Table S3. Average nucleotide identity of MAGs retrieved from the Cabin Branch metagenomes.
DOI: 10.6084/m9.figshare.12324578.v1
title: Additional file 2 of Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site

description: Additional file 2: Table S2. Sequencing and assembly statistics for metagenomes used in this research.
DOI: 10.6084/m9.figshare.12324539
title: Additional file 1 of MRI perfusion analysis using freeware, standard imaging software

description: Additional file 1.
DOI: 10.6084/m9.figshare.12324539.v1
title: Additional file 1 of MRI perfusion analysis using freeware, standard imaging software

description: Additional file 1.
DOI: 10.6084/m9.figshare.12324518
title: Additional file 4 of Association between parent and child physical activity: a systematic review

description: Additional file 4. Overall risk of bias judgement.
DOI: 10.6084/m9.figshare.12324518.v1
title: Additional file 4 of Association between parent and child physical activity: a systematic review

description: Additional file 4. Overall risk of bias judgement.
DOI: 10.6084/m9.figshare.12324491
title: Figure 5. C

description: Quantification of fibrosis area and blood vessel density in rat hearts.
DOI: 10.6084/m9.figshare.12324446
title: Additional file 2 of tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

description: Additional file 2. This .tsv file contains combined results containing DE, DIU and isoform switching results for genes, transcripts and proteins (where applicable), as output by tappAS.
DOI: 10.6084/m9.figshare.12324446.v1
title: Additional file 2 of tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

description: Additional file 2. This .tsv file contains combined results containing DE, DIU and isoform switching results for genes, transcripts and proteins (where applicable), as output by tappAS.
DOI: 10.6084/m9.figshare.12324398
title: Additional file 2 of Faculty persistence with research-based instructional strategies: a case study of participation in a faculty online learning community

description: Additional file 2:. FOLC case study interview transcript
DOI: 10.6084/m9.figshare.12324398.v1
title: Additional file 2 of Faculty persistence with research-based instructional strategies: a case study of participation in a faculty online learning community

description: Additional file 2:. FOLC case study interview transcript
DOI: 10.6084/m9.figshare.12324389
title: Additional file 1 of Carbonate dual-phase improves the performance of single-layer fuel cell made from mixed ionic and semiconductor composite

description: Additional file 1 Figure S1. IV and IP cuve of the LNZ-GDC cell. Figure S2. Ionic (black) and electronic (red) conductivities of LNZ-GDC-NLKC SLFCs at different temperatures. Figure S3. Difference between ionic and electronic conductivities of LNZ-GDC-NLKC SLFCs at different temperatures.
DOI: 10.6084/m9.figshare.12324389.v1
title: Additional file 1 of Carbonate dual-phase improves the performance of single-layer fuel cell made from mixed ionic and semiconductor composite

description: Additional file 1 Figure S1. IV and IP cuve of the LNZ-GDC cell. Figure S2. Ionic (black) and electronic (red) conductivities of LNZ-GDC-NLKC SLFCs at different temperatures. Figure S3. Difference between ionic and electronic conductivities of LNZ-GDC-NLKC SLFCs at different temperatures.
DOI: 10.6084/m9.figshare.12324341
title: Supplementary Tables S1-S8 from Is there a role for sarcolipin in avian facultative thermogenesis in extreme cold?

description: All tables are included as multiple sheets of a single .xlsx file. This includes sample sizes for acclimation groups, treatment assignments for each individual, raw read counts for each gene in the reference genome, normalized read counts for every gene in the dataset, functional enrichment output, patterns of differential expression, genes exhibiting changes in magnitude of expression across sampling points, and expression patterns for genes in the MC and ECC pathways.
DOI: 10.6084/m9.figshare.12324335
title: Data file from Sperm sex ratio adjustment in a mammal: perceived male competition leads to elevated proportions of female-producing sperm

description: Mammal sex allocation research has focused almost exclusively on maternal traits, but it is now apparent that fathers can also influence offspring sex ratios. Parents that produce female offspring under conditions of the intense male–male competition can benefit with greater assurance of maximized grand-parentage. Adaptive adjustment in the sperm sex ratio, for example with an increase in the production of X-chromosome bearing sperm (CBS), is one potential paternal mechanism for achieving female-biased sex ratios. Here, we tested this mechanistic hypothesis by varying the risk of male–male competition that male house mice perceived during development, and quantifying sperm sex ratios at sexual maturity. Our analyses revealed that males exposed to a competitive ‘risk’ produced lower proportions of Y-CBS compared to males that matured under ‘no risk’ of competition. We also explored whether testosterone production was linked to sperm sex ratio variation, but found no evidence to support this. We discuss our findings in relation to the adaptive value of sperm sex ratio adjustments and the role of steroid hormones in socially induced sex allocation.
DOI: 10.6084/m9.figshare.12324341.v1
title: Supplementary Tables S1-S8 from Is there a role for sarcolipin in avian facultative thermogenesis in extreme cold?

description: All tables are included as multiple sheets of a single .xlsx file. This includes sample sizes for acclimation groups, treatment assignments for each individual, raw read counts for each gene in the reference genome, normalized read counts for every gene in the dataset, functional enrichment output, patterns of differential expression, genes exhibiting changes in magnitude of expression across sampling points, and expression patterns for genes in the MC and ECC pathways.
DOI: 10.6084/m9.figshare.12324332
title: R code from Sperm sex ratio adjustment in a mammal: perceived male competition leads to elevated proportions of female-producing sperm

description: Mammal sex allocation research has focused almost exclusively on maternal traits, but it is now apparent that fathers can also influence offspring sex ratios. Parents that produce female offspring under conditions of the intense male–male competition can benefit with greater assurance of maximized grand-parentage. Adaptive adjustment in the sperm sex ratio, for example with an increase in the production of X-chromosome bearing sperm (CBS), is one potential paternal mechanism for achieving female-biased sex ratios. Here, we tested this mechanistic hypothesis by varying the risk of male–male competition that male house mice perceived during development, and quantifying sperm sex ratios at sexual maturity. Our analyses revealed that males exposed to a competitive ‘risk’ produced lower proportions of Y-CBS compared to males that matured under ‘no risk’ of competition. We also explored whether testosterone production was linked to sperm sex ratio variation, but found no evidence to support this. We discuss our findings in relation to the adaptive value of sperm sex ratio adjustments and the role of steroid hormones in socially induced sex allocation.
DOI: 10.6084/m9.figshare.12324332.v1
title: R code from Sperm sex ratio adjustment in a mammal: perceived male competition leads to elevated proportions of female-producing sperm

description: Mammal sex allocation research has focused almost exclusively on maternal traits, but it is now apparent that fathers can also influence offspring sex ratios. Parents that produce female offspring under conditions of the intense male–male competition can benefit with greater assurance of maximized grand-parentage. Adaptive adjustment in the sperm sex ratio, for example with an increase in the production of X-chromosome bearing sperm (CBS), is one potential paternal mechanism for achieving female-biased sex ratios. Here, we tested this mechanistic hypothesis by varying the risk of male–male competition that male house mice perceived during development, and quantifying sperm sex ratios at sexual maturity. Our analyses revealed that males exposed to a competitive ‘risk’ produced lower proportions of Y-CBS compared to males that matured under ‘no risk’ of competition. We also explored whether testosterone production was linked to sperm sex ratio variation, but found no evidence to support this. We discuss our findings in relation to the adaptive value of sperm sex ratio adjustments and the role of steroid hormones in socially induced sex allocation.
DOI: 10.6084/m9.figshare.12324335.v1
title: Data file from Sperm sex ratio adjustment in a mammal: perceived male competition leads to elevated proportions of female-producing sperm

description: Mammal sex allocation research has focused almost exclusively on maternal traits, but it is now apparent that fathers can also influence offspring sex ratios. Parents that produce female offspring under conditions of the intense male–male competition can benefit with greater assurance of maximized grand-parentage. Adaptive adjustment in the sperm sex ratio, for example with an increase in the production of X-chromosome bearing sperm (CBS), is one potential paternal mechanism for achieving female-biased sex ratios. Here, we tested this mechanistic hypothesis by varying the risk of male–male competition that male house mice perceived during development, and quantifying sperm sex ratios at sexual maturity. Our analyses revealed that males exposed to a competitive ‘risk’ produced lower proportions of Y-CBS compared to males that matured under ‘no risk’ of competition. We also explored whether testosterone production was linked to sperm sex ratio variation, but found no evidence to support this. We discuss our findings in relation to the adaptive value of sperm sex ratio adjustments and the role of steroid hormones in socially induced sex allocation.
DOI: 10.6084/m9.figshare.12324260
title: Figure 4. A, C-I

description: Echocardiographic examination of rats.
DOI: 10.25345/c5d18m
title: MassIVE MSV000086008 - The Azospirillum brasilense core chemotaxis proteins integrate chemotaxis signaling with nitrogen and carbon metabolic networks
title: Chemotaxis is used by free-living motile bacteria to swim towards nutrient sources or away from repellents, and to navigate the environment to locate niches optimal for growth and survival. Multiple chemotaxis systems have been identified in different bacterial species, including Azospirillum brasilense. In A. brasilense, chemotaxis is mediated by two distinct chemotaxis pathways, named Che1 and Che4, that physically interact to form mixed chemotaxis signaling arrays. Signaling from the Che1 and Che4 pathways control transient increases in swimming speed and swimming reversals, respectively, during chemotaxis. In A. brasilense, chemotaxis is tightly linked to energy metabolism with this coupling occurring through the sensory input of several energy-sensing chemoreceptors and through the control of chemoreceptor activity by the c-di-GMP second messenger. Previous work has demonstrated that chemotaxis in A. brasilense also affects unrelated cellular functions including cell-to-cell clumping and flocculation. However, the molecular mechanism for these effects is not known. Here, we identify additional effects of mutations abolishing Che1 (cheA1 mutant), Che4 (cheA4 mutant) or both Che1 and Che4 (cheA1/cheA4 mutant) function on nitrogen and carbon metabolism and use whole cell proteome and metabolome mass spectrometry to further characterize the interplay between chemotaxis and metabolism. We found that CheA1 mediates most changes in chemoreceptor arrays composition and also affects small molecules signaling while a mutant lacking CheA4 displays changes in nitrogen metabolism, including nitrate assimilation and nitrogen fixation. In contrast, the mutant lacking both CheA1 and CheA4, which lacks chemotaxis and does not form chemotaxis signaling arrays, displays distinct and non-overlapping changes that suggest the assembly of chemotaxis signaling arrays modulates energy and carbon metabolism. Together, the results suggest distinct roles for CheA1, CheA4 and chemotaxis signaling arrays in modulating chemotaxis and metabolism, likely through control of distinct global regulatory networks.
DOI: 10.6084/m9.figshare.12324218
title: Figure 3. D / Quantification

description: Analysis of lymphatic endothelial vessels formation.
DOI: 10.6084/m9.figshare.12324218.v1
title: Figure 3. D / Quantification

description: Analysis of lymphatic endothelial vessels formation.
DOI: 10.6084/m9.figshare.12324239.v1
title: Establishing links between Lean Product Development (LPD) practices and wastes incident to New Product Development_Supplemental Material.xlsx

description: This framework consists of a viable configuration to establish relationships between 114 identified Lean Product Development (LPD) practices (lines), and 11 categories of waste that may affect New Product Development (NPD) (columns) from the perspective of different authors. Associated with the categories of wastes collected, 47 types of problems were identified. The relationship between waste and practices was established from the analysis of 220 studies.This matrix explains the logic underpinning the construction of the relationship matrix, based on a spreadsheet containing over 1,300 relationships between LPD versus waste practices versus authors. Analysis of the matrix enabled the identification of LPD practices that can attenuate waste in the context of NPD (all raised in the literature researched). It was also possible to establish a theoretical basis for the relationship between practice and waste. This study could contribute to the identification of theoretical gaps and opportunities for future studies on this issue. Analyzing the matrix in more detail, it was observed that some practices relate to only one of the waste categories, such as the “Strategy to increase consumer involvement,” which related only to the “Excessive processing” waste category; the “Price practices (target prices and shared cost reduction due to improvement efforts),” which related only to the “Reinvention” category; and the “Poka Yoke,” “Total Productive Maintenance (TPM)” and “TQM” practices, which related only to the “Defects” waste category. Thus, the latter waste category was the one that presented the most practices with only one relationship.<br>
DOI: 10.6084/m9.figshare.12324143
title: Sexual conflict in protandrous flowers and the evolution of gyndioecy

description: Sexual interference between male and female function in hermaphrodite plants is reduced by protandry. In environments with insufficient pollinator service, prolongation of male function owing to limited pollen removal could restrict the duration of female function lowering seed production. We provide evidence that this form of sexual conflict has played a role in the spread of females in gynodioecious populations of <i>Cyananthus delavayi</i> in the pollen-limited environments in which this subalpine species occurs. Using field experiments involving artificial pollen removal from the strongly protandrous flowers of hermaphrodites, we demonstrated a negative trade-off between male- and female-phase duration. Pollen removal at the beginning of anthesis resulted in hermaphrodite seed production matching that of females. In contrast, restricted pollen removal increased the duration of male function at the expense of female function lowering maternal fertility compared to females. This latter pattern was evident in five populations we investigated, with females experiencing a two-fold average seed fertility advantage compared to hermaphrodites. Gynodioecy often evolves from protandrous ancestors and pollen limitation is widespread in flowering plants suggesting that sexual conflict may play an unappreciated role in the evolution of this form of sexual dimorphism.
DOI: 10.6084/m9.figshare.12324143.v1
title: Sexual conflict in protandrous flowers and the evolution of gyndioecy

description: Sexual interference between male and female function in hermaphrodite plants is reduced by protandry. In environments with insufficient pollinator service, prolongation of male function owing to limited pollen removal could restrict the duration of female function lowering seed production. We provide evidence that this form of sexual conflict has played a role in the spread of females in gynodioecious populations of <i>Cyananthus delavayi</i> in the pollen-limited environments in which this subalpine species occurs. Using field experiments involving artificial pollen removal from the strongly protandrous flowers of hermaphrodites, we demonstrated a negative trade-off between male- and female-phase duration. Pollen removal at the beginning of anthesis resulted in hermaphrodite seed production matching that of females. In contrast, restricted pollen removal increased the duration of male function at the expense of female function lowering maternal fertility compared to females. This latter pattern was evident in five populations we investigated, with females experiencing a two-fold average seed fertility advantage compared to hermaphrodites. Gynodioecy often evolves from protandrous ancestors and pollen limitation is widespread in flowering plants suggesting that sexual conflict may play an unappreciated role in the evolution of this form of sexual dimorphism.
DOI: 10.6084/m9.figshare.12324122
title: Metadata record for: MARES, a replicable pipeline and curated reference database for marine eukaryote metabarcoding

description: This dataset contains key characteristics about the data described in the Data Descriptor MARES, a replicable pipeline and curated reference database for marine eukaryote metabarcoding. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12324122.v1
title: Metadata record for: MARES, a replicable pipeline and curated reference database for marine eukaryote metabarcoding

description: This dataset contains key characteristics about the data described in the Data Descriptor MARES, a replicable pipeline and curated reference database for marine eukaryote metabarcoding. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12324107
title: low gamma read end

description: low gamma rear end<br>
DOI: 10.6084/m9.figshare.12324107.v3
title: low gamma read end

description: low gamma rear end<br>
DOI: 10.6084/m9.figshare.12323924
title: NMTgroupDataFull.mat

description: INFO for using opensource data for the following study:"Contributions of spatial and temporal control of step length symmetry in the transfer of locomotor adaptation from a motorized to a non-motorized split-belt treadmill"<br>For a detailed description of the study, the purpose of the study, and data visuals see the pre-print which can be found here: https://www.biorxiv.org/content/10.1101/699736v2<br>Detailed information about data structure and access can be found in the file "NMTstudyINFO.txt".
DOI: 10.6084/m9.figshare.12323924.v1
title: NMTgroupDataFull.mat

description: INFO for using opensource data for the following study:"Contributions of spatial and temporal control of step length symmetry in the transfer of locomotor adaptation from a motorized to a non-motorized split-belt treadmill"<br>For a detailed description of the study, the purpose of the study, and data visuals see the pre-print which can be found here: https://www.biorxiv.org/content/10.1101/699736v2<br>Detailed information about data structure and access can be found in the file "NMTstudyINFO.txt".
DOI: 10.6084/m9.figshare.12323888
title: Supplementary Table 9

description: Supplementary Table 9 (Day 10 in culture with 5AZA treatment; all significantly hypo and hypermethylated CpG sites)
DOI: 10.6084/m9.figshare.12323915
title: planilha estatistica Digestive byproducts.xlsx

description: Data set from the manuscript addresses the use of nutritional alternatives: that the addition of soybean hulls levels affects protein and carbohydrate fractionation, with significant changes in rumen degradability; that most of the analyzed variables were affected linearly, so levels of additive inclusion resulted in satisfactory growth of rumen microorganisms and synchronism between the protein and carbohydrate digestion rates; and that these had important effect on the end products of fermentation and on animal production. This is significant because animals fed diets showing these characteristics can better express their animal performance. The results obtained in this study indicate that the addition of intermediate levels of soybean hulls close to 20–30% ensures better characteristics in the silage of<i> Brachiaria decumbens</i>.
DOI: 10.6084/m9.figshare.12323888.v1
title: Supplementary Table 9

description: Supplementary Table 9 (Day 10 in culture with 5AZA treatment; all significantly hypo and hypermethylated CpG sites)