cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5050288.v1
title: Prediction of long-term survival in patients with metastatic gastrointestinal stromal tumor: analysis of a large, single-institution cohort

description: <b>Background:</b> A subset of patients with metastatic GIST become long-term survivors, and a more precise prediction of outcome could improve clinical decision-making. <b>Material and methods:</b> One-hundred and thirty-three patients diagnosed with metastatic GIST from 1995 to 2013 were identified from the sarcoma database at Oslo University Hospital. Clinical data prospectively registered in the database were supplemented with retrospective review of medical records. Factors associated with survival were analyzed using Kaplan–Meier curves, log-rank test, univariate and multivariate Cox regression analyses. <b>Results:</b> One-hundred and fifteen patients with metastatic GIST were included in the final study cohort. Median overall survival (OS) was 6.9 years (95% CI 5.6–8.3). Factors associated with long-term survival in univariate analysis were good baseline performance status (ECOG ≤1; <i>p</i> p = .022), oligometastatic disease (OMD) (≤3 metastases; <i>p</i> p p = .005), surgery of the primary tumor (<i>p</i> p = .05), normal baseline albumin level (<i>p</i> = .001) and normal baseline neutrophil count (<i>p</i> = .03). On multivariate analysis, good performance status, small tumor diameter and, OMD were the factors associated with long-term survival. Five and 10-year OS for patients with OMD were 89% and 71%, respectively, compared to 38% and 20% for patients with polymetastatic disease (<i>p</i> <b>Conclusions:</b> In this single-institution cohort of patients, OMD was as a strong prognostic factor in patients with metastatic GIST. Patients with OMD had an outcome similar to patients with high-risk localized disease, and should be regarded as a separate category among patients with metastatic GIST.
DOI: 10.6084/m9.figshare.5050132
title: Metabolomics-data-1-6-17.xlsx

description: A dataset of samples taken from flooded soil at timepoints (days) 0 (before flooding), 1, 3, 5, 7, 10, 14, 17, 21, 24 and 31. <br>
DOI: 10.6084/m9.figshare.5049166.v1
title: CF2_fastqjoin.un1.fastq

description: Raw paired-end Illumina MiSeq 16S sequences for experiment CF2. Associated mapping files found in main project folder at the following link:<br>https://figshare.com/projects/Stern_et_al_2017_Applied_Environmental_Microbiology/22213<br>Data from: Stern, N., Ginder-Vogel, M., Stegen, J.C., Arntzen, B., Kennedy, W.K., Larget, B.R., Roden, E.R. (2017). Colonization habitat controls biomass, composition, and metabolic activity of attached microbial communities in the Columbia River hyporheic corridor. Applied Environmental Microbiology. Accepted March 2017(Under Revision).<br><br>
DOI: 10.6084/m9.figshare.5049124
title: CF1_andDCF_fastqjoin.un2.fastq

description: Raw paired-end Illumina MiSeq 16S sequences for experiments CF1 and DCF. Associated mapping files found in main project folder at the following link:<br>https://figshare.com/projects/Stern_et_al_2017_Applied_Environmental_Microbiology/22213<br>Data from: Stern, N., Ginder-Vogel, M., Stegen, J.C., Arntzen, B., Kennedy, W.K., Larget, B.R., Roden, E.R. (2017). Colonization habitat controls biomass, composition, and metabolic activity of attached microbial communities in the Columbia River hyporheic corridor. Applied Environmental Microbiology. Accepted March 2017(Under Revision).<br>
DOI: 10.6084/m9.figshare.5049124.v1
title: CF1_andDCF_fastqjoin.un2.fastq

description: Raw paired-end Illumina MiSeq 16S sequences for experiments CF1 and DCF. Associated mapping files found in main project folder at the following link:<br>https://figshare.com/projects/Stern_et_al_2017_Applied_Environmental_Microbiology/22213<br>Data from: Stern, N., Ginder-Vogel, M., Stegen, J.C., Arntzen, B., Kennedy, W.K., Larget, B.R., Roden, E.R. (2017). Colonization habitat controls biomass, composition, and metabolic activity of attached microbial communities in the Columbia River hyporheic corridor. Applied Environmental Microbiology. Accepted March 2017(Under Revision).<br>
DOI: 10.6084/m9.figshare.5048992
title: CF1_andDCF_fastqjoin.un1.fastq

description: Raw paired-end Illumina MiSeq 16S sequences for experiments CF1 and DCF. Associated mapping files found in main project folder at the following link:<br>https://figshare.com/projects/Stern_et_al_2017_Applied_Environmental_Microbiology/22213<br>Data from: Stern, N., Ginder-Vogel, M., Stegen, J.C., Arntzen, B., Kennedy, W.K., Larget, B.R., Roden, E.R. (2017). Colonization habitat controls biomass, composition, and metabolic activity of attached microbial communities in the Columbia River hyporheic corridor. Applied Environmental Microbiology. Accepted March 2017(Under Revision).<br>
DOI: 10.6084/m9.figshare.5049031
title: EEG neuromarkers

description: We identified the neuromarkers by using 37 prerehabilitation electroencephalogram (EEG) datasets during a movement task through DCM and tested the neuromarkers by using 16 independent datasets (i.e. construct validation).
DOI: 10.6084/m9.figshare.5048992.v1
title: CF1_andDCF_fastqjoin.un1.fastq

description: Raw paired-end Illumina MiSeq 16S sequences for experiments CF1 and DCF. Associated mapping files found in main project folder at the following link:<br>https://figshare.com/projects/Stern_et_al_2017_Applied_Environmental_Microbiology/22213<br>Data from: Stern, N., Ginder-Vogel, M., Stegen, J.C., Arntzen, B., Kennedy, W.K., Larget, B.R., Roden, E.R. (2017). Colonization habitat controls biomass, composition, and metabolic activity of attached microbial communities in the Columbia River hyporheic corridor. Applied Environmental Microbiology. Accepted March 2017(Under Revision).<br>
DOI: 10.6084/m9.figshare.5049031.v1
title: EEG neuromarkers

description: We identified the neuromarkers by using 37 prerehabilitation electroencephalogram (EEG) datasets during a movement task through DCM and tested the neuromarkers by using 16 independent datasets (i.e. construct validation).
DOI: 10.6084/m9.figshare.5048947
title: China provincial CO2 emission inventory (sectoral approach), 1997-2015

description: The dataset provides China provincial CO2 emission inventory (sectoral approach) from 1997-2015.The emissions include CO2 from fossil fuel combustion and cement process.
DOI: 10.6084/m9.figshare.5048950
title: China provincial CO2 emission inventory (reference approach), 1997-2015

description: The dataset provides China provincial CO2 emission inventory (reference approach) from 1997-2015.The emissions include CO2 from fossil fuel combustion and cement process.
DOI: 10.6084/m9.figshare.5048965
title: Supplementary Material for the paper "Transfer Learning for Speech Recognition on a Budget." (ACL2017)

description: Supplementary Material for the paper: Julius Kunze, Louis Kirsch, Ilia Kurenkov, Andreas Krug, Jens Johannsmeier and Sebastian Stober: "Transfer Learning for Speech Recognition on a Budget." In: 2nd Workshop on Representation Learning for NLP (RepL4NLP) at the 55th Annual Meeting of the Association for Computational Linguistics (ACL'17), 2017
DOI: 10.6084/m9.figshare.5048938
title: China national CO2 emission inventory (reference approach), 2000-2015

description: The dataset provides China national CO2 emission inventory (reference approach) from 2000-2015.The emissions include CO2 from fossil fuel combustion and cement process.
DOI: 10.6084/m9.figshare.5048965.v2
title: Supplementary Material for the paper "Transfer Learning for Speech Recognition on a Budget." (ACL2017)

description: Supplementary Material for the paper: Julius Kunze, Louis Kirsch, Ilia Kurenkov, Andreas Krug, Jens Johannsmeier and Sebastian Stober: "Transfer Learning for Speech Recognition on a Budget." In: 2nd Workshop on Representation Learning for NLP (RepL4NLP) at the 55th Annual Meeting of the Association for Computational Linguistics (ACL'17), 2017
DOI: 10.6084/m9.figshare.5048947.v1
title: China provincial CO2 emission inventory (sectoral approach), 1997-2015

description: The dataset provides China provincial CO2 emission inventory (sectoral approach) from 1997-2015.The emissions include CO2 from fossil fuel combustion and cement process.
DOI: 10.6084/m9.figshare.5048935
title: Supplementary Datasets for "Benefit from decline: The primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise"

description: This file set contains supplementary dataset for paper "Hou, S.<i> et al.</i> <b>Benefit from decline: The primary transcriptome of <i>Alteromonas macleodii </i>str. Te101 during <i>Trichodesmium</i> demise</b>. (<i>accepted</i>)." Please refer to this paper for more information.<b><br></b><b>File Description:</b><b>Supplemental Dataset S1:</b> Genome-wide visualization of predicted TSS and coverage for the genome of <i>Alteromonas</i> <i>macleodii</i> str. Te101.<b>Supplementary Dataset 2: </b>Genome-wide GO assignments of <i>Alteromonas</i> <i>macleodii</i> str. Te101 proteins.<br><br><b>How To Cite This Dataset:</b><br>If you find this dataset useful to your research, please consider to cite the main paper: Hou, S. <i>et al</i>. <b>Benefit from decline: The primary transcriptome of <i>Alteromonas macleodii</i> str. Te101 when <i>Trichodesmium</i> collapses.</b> (<i>accepted</i>)<br><br>
DOI: 10.6084/m9.figshare.5048950.v1
title: China provincial CO2 emission inventory (reference approach), 1997-2015

description: The dataset provides China provincial CO2 emission inventory (reference approach) from 1997-2015.The emissions include CO2 from fossil fuel combustion and cement process.
DOI: 10.6084/m9.figshare.5048911
title: China national CO2 emission inventory (sectoral approach), 2000-2015

description: The dataset provides China national CO2 emission inventory (sectoral approach) from 2000-2015.The emissions include CO2 from fossil fuel combustion and cement process.
DOI: 10.6084/m9.figshare.5048935.v1
title: Supplementary Datasets for "Benefit from decline: The primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise"

description: This file set contains supplementary dataset for paper "Hou, S.<i> et al.</i> <b>Benefit from decline: The primary transcriptome of <i>Alteromonas macleodii </i>str. Te101 during <i>Trichodesmium</i> demise</b>. (<i>accepted</i>)." Please refer to this paper for more information.<b><br></b><b>File Description:</b><b>Supplemental Dataset S1:</b> Genome-wide visualization of predicted TSS and coverage for the genome of <i>Alteromonas</i> <i>macleodii</i> str. Te101.<b>Supplementary Dataset 2: </b>Genome-wide GO assignments of <i>Alteromonas</i> <i>macleodii</i> str. Te101 proteins.<br><br><b>How To Cite This Dataset:</b><br>If you find this dataset useful to your research, please consider to cite the main paper: Hou, S. <i>et al</i>. <b>Benefit from decline: The primary transcriptome of <i>Alteromonas macleodii</i> str. Te101 when <i>Trichodesmium</i> collapses.</b> (<i>accepted</i>)<br><br>
DOI: 10.6084/m9.figshare.5048854
title: Datasets and R code (pdf & knitr Rnw) to run analyses in the isoecophylo project, which has (so far) resulted in Ezard et al. (2015) and Edgar et al. (2017).

description: Data and analytical files associated with <br>Edgar, K.M., Hull, P.M. & Ezard, T.H.G. (2017) Evolutionary history biases inferences of ecology and environment from δ13C but not δ18O values. Nature Communications. doi: 10.1038/s41467-017-01154-7.<br>Ezard, T.H.G., Edgar, K.M. & Hull, P.M. (2015) Environmental and biological controls on size-specific δ13C and δ18O in recent planktonic foraminifera. Paleooceanography 30, 151–173. doi: 10.1002/2014PA002735.<br>For both papers, start with the supporting material pdf files, which use the knitr package to render code and notes into a more readable format. The raw code is more readily copyable from the generating Rnw files. Both files contain references to identify the remaining data objects, which have been renamed for ease of identification - the names used within the code are given within parentheses. Write to t.ezard [at] soton.ac.uk with any questions about the code. Have fun!
DOI: 10.6084/m9.figshare.5048938.v1
title: China national CO2 emission inventory (reference approach), 2000-2015

description: The dataset provides China national CO2 emission inventory (reference approach) from 2000-2015.The emissions include CO2 from fossil fuel combustion and cement process.
DOI: 10.6084/m9.figshare.5048848
title: XCMS-diffreport-MultiClass.xlsx

description: An untargeted metabolomics study using LC-MS, investigating the changes between the different growth phases of Sulfolobus islandicus.
DOI: 10.6084/m9.figshare.5048848.v1
title: XCMS-diffreport-MultiClass.xlsx

description: An untargeted metabolomics study using LC-MS, investigating the changes between the different growth phases of Sulfolobus islandicus.
DOI: 10.6084/m9.figshare.5048911.v1
title: China national CO2 emission inventory (sectoral approach), 2000-2015

description: The dataset provides China national CO2 emission inventory (sectoral approach) from 2000-2015.The emissions include CO2 from fossil fuel combustion and cement process.
DOI: 10.6084/m9.figshare.5048746
title: Sukhothai

description: The Sukhothai city GIS data including space syntax of street and point data of housing.
DOI: 10.6084/m9.figshare.5048743
title: Phrae

description: The Phrae city GIS data including space syntax of street and point data of housing.
DOI: 10.6084/m9.figshare.5048746.v1
title: Sukhothai

description: The Sukhothai city GIS data including space syntax of street and point data of housing.
DOI: 10.6084/m9.figshare.5048740
title: Lamphun

description: The Lamphun city GIS data including space syntax of street and point data of housing.
DOI: 10.6084/m9.figshare.5048743.v1
title: Phrae

description: The Phrae city GIS data including space syntax of street and point data of housing.
DOI: 10.6084/m9.figshare.5048731
title: PowerPoint Slides for: Higher Ultrafiltration Rate Is Associated with Longer Dialysis Recovery Time in Patients Undergoing Conventional Hemodialysis

description: <i>Background:</i> Increased mortality and morbidity are reported in association with high ultrafiltration rate (UFR) and with long dialysis recovery time (DRT). We studied the association between UFR and DRT. <i>Methods:</i> This is a cross-sectional, observational study was conducted. Patients on thrice-weekly hemodialysis (HD) with self-reported DRT between August and December 2014 were included. We examined the association of 30-day average UFR with recovery time. <i>Results:</i> The total number of patients included in this study was 2,689. DRT in categories of immediate recovery, &gt;0-≤2, &gt;2-≤6, &gt;6-≤12, and &gt;12 h, were reported in 27, 28, 17, 9, and 20% of the patients respectively. In multivariable analysis, longer DRT was associated with female gender, non-black race, higher body weight, lower serum albumin, chronic heart failure, cerebrovascular disease, missed dialysis sessions, higher pre-dialysis systolic blood pressure, and larger UF volume. Compared to UFR of &lt;10, UFR ≥13 mL/kg/h was associated with longer DRT, OR of 1.16 (95% CI 0.99-1.36), and 1.28 (95% CI 1.06-1.54) in the unadjusted and the adjusted analyses respectively. Intradialytic hypotension was also associated with longer DRT in the unadjusted (per 10% higher frequency, OR 1.04 [95% CI 1.01-1.07]) and adjusted analyses (OR 1.03 [95% CI 1.00-1.07]). <i>Conclusion:</i>Long recovery time is common after HD. Rapid fluid removal is associated with longer DRT.
DOI: 10.6084/m9.figshare.5048734
title: Lampang

description: The Lampang city GIS data including space syntax of street and point data of housing.
DOI: 10.6084/m9.figshare.5048740.v1
title: Lamphun

description: The Lamphun city GIS data including space syntax of street and point data of housing.
DOI: 10.6084/m9.figshare.5048713
title: Chiangsaen

description: The Chiang Saen city GIS dataset including space syntax's integration of street and point data of housing.
DOI: 10.6084/m9.figshare.5048731.v1
title: PowerPoint Slides for: Higher Ultrafiltration Rate Is Associated with Longer Dialysis Recovery Time in Patients Undergoing Conventional Hemodialysis

description: <i>Background:</i> Increased mortality and morbidity are reported in association with high ultrafiltration rate (UFR) and with long dialysis recovery time (DRT). We studied the association between UFR and DRT. <i>Methods:</i> This is a cross-sectional, observational study was conducted. Patients on thrice-weekly hemodialysis (HD) with self-reported DRT between August and December 2014 were included. We examined the association of 30-day average UFR with recovery time. <i>Results:</i> The total number of patients included in this study was 2,689. DRT in categories of immediate recovery, &gt;0-≤2, &gt;2-≤6, &gt;6-≤12, and &gt;12 h, were reported in 27, 28, 17, 9, and 20% of the patients respectively. In multivariable analysis, longer DRT was associated with female gender, non-black race, higher body weight, lower serum albumin, chronic heart failure, cerebrovascular disease, missed dialysis sessions, higher pre-dialysis systolic blood pressure, and larger UF volume. Compared to UFR of &lt;10, UFR ≥13 mL/kg/h was associated with longer DRT, OR of 1.16 (95% CI 0.99-1.36), and 1.28 (95% CI 1.06-1.54) in the unadjusted and the adjusted analyses respectively. Intradialytic hypotension was also associated with longer DRT in the unadjusted (per 10% higher frequency, OR 1.04 [95% CI 1.01-1.07]) and adjusted analyses (OR 1.03 [95% CI 1.00-1.07]). <i>Conclusion:</i>Long recovery time is common after HD. Rapid fluid removal is associated with longer DRT.
DOI: 10.6084/m9.figshare.5048734.v1
title: Lampang

description: The Lampang city GIS data including space syntax of street and point data of housing.
DOI: 10.6084/m9.figshare.5048686
title: Sundin et al. 2017 BEAS Suppl data

description: Raw data for the paper: <b>Long-term exposure to elevated carbon dioxide does not alter activity levels of a coral reef fish in response to predator chemical cues</b>
DOI: 10.6084/m9.figshare.5048632
title: Dietary exposure to trace elements and health risk assessment in the region of Valencia, Spain: a total diet study

description: Dietary exposure of the Valencian region population to lead, cadmium, inorganic arsenic (iAs), chromium, copper, tin and methylmercury (meHg) was assessed in a total diet study carried out in the region of Valencia in 2010–11. A total of 8100 food samples were collected and analysed. Occurrence data were combined with consumption data to estimate dietary exposure in adults (&gt; 15 years of age) and young children (6–15 years of age). The estimated intake was calculated by a probabilistic approach. Average intake levels (optimistic scenario) for lead, iAs, chromium and tin were 0.21, 0.08, 1.79 and 1.87 µg kg<sup>−</sup><sup>1</sup> bw day<sup>−1</sup> respectively; for Cd and meHg average intake levels were 0.77 and 0.54 µg kg<sup>–</sup><sup>1</sup> bw week<sup>−1</sup>, respectively, and for Cu, 1.60 mg day<sup>−1</sup>. In terms of risk characterisation, the results showed that 2.84% of the adult population may exceed the BMDL<sub>10</sub> (benchmark dose lower confidence limit) established for Pb, which is linked to renal effects; whereas 28.01% of the young children population may exceed the BMDL<sub>01</sub> related to neurodevelopment effects. In addition, 8.47% of the adult population and 12.32% of young children exceeded the meHg tolerable weekly intake (TWI).
DOI: 10.6084/m9.figshare.5048686.v2
title: Sundin et al. 2017 BEAS Suppl data

description: Raw data for the paper: <b>Long-term exposure to elevated carbon dioxide does not alter activity levels of a coral reef fish in response to predator chemical cues</b>
DOI: 10.6084/m9.figshare.5048623
title: Official Information Act (NZ) Request Totals. 1990-2016

description: Recorded official information request totals from selected New Zealand government agencies. Earliest date is for 1990 and latest for 2016 (years ending June 30).<br>2016 totals from State Services Commission survey and older data from a 2001 thesis survey<br>
DOI: 10.6084/m9.figshare.5048632.v1
title: Dietary exposure to trace elements and health risk assessment in the region of Valencia, Spain: a total diet study

description: Dietary exposure of the Valencian region population to lead, cadmium, inorganic arsenic (iAs), chromium, copper, tin and methylmercury (meHg) was assessed in a total diet study carried out in the region of Valencia in 2010–11. A total of 8100 food samples were collected and analysed. Occurrence data were combined with consumption data to estimate dietary exposure in adults (&gt; 15 years of age) and young children (6–15 years of age). The estimated intake was calculated by a probabilistic approach. Average intake levels (optimistic scenario) for lead, iAs, chromium and tin were 0.21, 0.08, 1.79 and 1.87 µg kg<sup>−</sup><sup>1</sup> bw day<sup>−1</sup> respectively; for Cd and meHg average intake levels were 0.77 and 0.54 µg kg<sup>–</sup><sup>1</sup> bw week<sup>−1</sup>, respectively, and for Cu, 1.60 mg day<sup>−1</sup>. In terms of risk characterisation, the results showed that 2.84% of the adult population may exceed the BMDL<sub>10</sub> (benchmark dose lower confidence limit) established for Pb, which is linked to renal effects; whereas 28.01% of the young children population may exceed the BMDL<sub>01</sub> related to neurodevelopment effects. In addition, 8.47% of the adult population and 12.32% of young children exceeded the meHg tolerable weekly intake (TWI).
DOI: 10.6084/m9.figshare.5048686.v1
title: Sundin et al. 2017 BEAS Suppl data.xls

description: Raw data for the paper: <b>Long-term exposure to elevated carbon dioxide does not alter activity levels of a coral reef fish in response to predator chemical cues</b>
DOI: 10.6084/m9.figshare.5048614
title: Supplemental Table 5 from Topological features of a gene co-expression network predict patterns of natural diversity in environmental response

description: GO Functional enrichments for the largest over-enriched Drought module
DOI: 10.6084/m9.figshare.5048608
title: Supplemental Table 4 from Topological features of a gene co-expression network predict patterns of natural diversity in environmental response

description: GO Functional enrichments for the largest over-enriched Cold module
DOI: 10.6084/m9.figshare.5048587
title: Codes.tar from Extensional channel flow revisited: a dynamical systems perspective

description: Matlab codes for time evolution and continuation.
DOI: 10.6084/m9.figshare.5048584
title: Vibration data of the clamped-clamped beam from Nonlinear model identification and spectral submanifolds for multi-degree-of-freedom mechanical vibrations

description: This is a MATLAB file containing velocity time series that were used to calculate the three backbone curves in figure 4. The data is re-sampled with a relatively coarse sample rate as described in the article text. The file contains 4 matrices. The first row of each matrix is time, the second row is the velocity of the beam near its midpoint. There are four tracks of vibrations, but only three of them, ‘NNM1a’, ‘NNM2’ and ‘NNM3’ were used to calculate the backbone curves. ‘NNM1b’ is an alternative track for the first mode, which can be used in combination with the rest or can replace ‘NNM1a’.
DOI: 10.6084/m9.figshare.5048587.v1
title: Codes.tar from Extensional channel flow revisited: a dynamical systems perspective

description: Matlab codes for time evolution and continuation.