cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14540595
title: Supplementary Material for: Bee- and Wasp-Venom Sensitization in Schoolchildren of High- and Low-Socioeconomic Status Living in an Urban Area of Indonesia

description: <b><i>Background:</i></b> There is not much known about venom allergy in tropical regions. Here, we studied the prevalence of specific IgE (sIgE) and skin prick test (SPT) reactivity and reported sting-related symptoms, in high- and low-socioeconomic status (SES) schoolchildren living in urban city of Makassar in Indonesia. <b><i>Methods:</i></b> Children from high- (<i>n</i> = 160) and low- (<i>n</i> = 165) SES schools were recruited. Standardized questionnaires were used to record information on allergic disorders as well as sting-related symptoms. Parasitic infection, SPT reactivity, and sIgE to <i>Apis mellifera</i> (bee-venom) as well as <i>Vespula spp.</i> (wasp-venom) were assessed. <b><i>Results:</i></b> SPT reactivity to bee- and wasp-venom was 14.3 and 12.7%, while the prevalence of sIgE was 26.5 and 28.5%, respectively. When SES was considered, prevalence of SPT to bee- and wasp-venom was higher in high-SES than in low-SES schoolchildren (bee: 22.8 vs. 5.7%, <i>p</i> &lt; 0.001; and wasp: 19.6 vs. 5.7%, <i>p</i> &lt; 0.001). Conversely, sIgE to both venoms was lower in high-SES than in low-SES (bee: 19 vs. 34%, <i>p</i> = 0.016; and wasp: 19 vs. 38%, <i>p</i> = 0.003). Furthermore, among SPT positive subjects, considerable proportion had no detectable sIgE to bee- (65.85%) or wasp-venom (66.67%). Altogether the sensitizations were rarely translated into clinical reaction, as only 1 child reported significant local reaction after being stung. No association with parasitic infections was found. <b><i>Conclusions and Clinical Relevance:</i></b> Sensitization against bee- or wasp-venom is quite prevalent among schoolchildren in Indonesia. The discordance between SPT and sIgE might suggest the direct (non-IgE) effect of venoms in skin reactivity. Recorded sensitizations had poor clinical relevance as they rarely translated into clinical symptoms.
DOI: 10.6084/m9.figshare.7981562
title: Improved statistical inference on semiparametric varying-coefficient partially linear measurement error model

description: In this paper, we consider the estimation and goodness-of-fit test of a semiparametric varying-coefficient partially linear (SVCPL) model when both responses and part of covariates are measured with error. It is assumed that the true variables are measurable functions of some auxiliary variables. The often-used assumptions on the measurement error, such as a known error variance, a known distribution of the error variable, a validation sample or a repeated data set, are not required. The asymptotic properties of the proposed estimators and testing statistic are investigated. We show that the application of the measurement error structures can improve the efficiency of estimating and testing methods. The performances of the estimating and testing methods are illustrated by simulation studies and an application to a real data set.
DOI: 10.6084/m9.figshare.7981562.v1
title: Improved statistical inference on semiparametric varying-coefficient partially linear measurement error model

description: In this paper, we consider the estimation and goodness-of-fit test of a semiparametric varying-coefficient partially linear (SVCPL) model when both responses and part of covariates are measured with error. It is assumed that the true variables are measurable functions of some auxiliary variables. The often-used assumptions on the measurement error, such as a known error variance, a known distribution of the error variable, a validation sample or a repeated data set, are not required. The asymptotic properties of the proposed estimators and testing statistic are investigated. We show that the application of the measurement error structures can improve the efficiency of estimating and testing methods. The performances of the estimating and testing methods are illustrated by simulation studies and an application to a real data set.
DOI: 10.5281/zenodo.4449849
title: Raw crystallographic data on PARP2-DNA complex

description: Raw images for the 27 datasets collected from 4 crystals that were used to merge a complete dataset used to solve the crystal structure. Structure and the processed data has been deposited to Protein Data Bank with an id 7AEO. The data is packaged to an tar-archive containing folders for each partial dataset together with a file that can be used to process data with program XDS. Individual frames are compressed with bzip2.
DOI: 10.5281/zenodo.4449848
title: Raw crystallographic data on PARP2-DNA complex

description: Raw images for the 27 datasets collected from 4 crystals that were used to merge a complete dataset used to solve the crystal structure. Structure and the processed data has been deposited to Protein Data Bank with an id 7AEO. The data is packaged to an tar-archive containing folders for each partial dataset together with a file that can be used to process data with program XDS. Individual frames are compressed with bzip2.
DOI: 10.5281/zenodo.4484114
title: Raw diffraction images of APX by SF-ROX at SACLA

description: Diffraction images of ascorbate peroxidase (APX, PDB code: 7BI1). They were collected using X-ray free electron laser from SACLA at 10 keV with the serial femtosecond rotation crystallography (SF-ROX) method. The MX300-HS CCD detector was used to record images. APX crystals belong to <em>P</em>4<sub>2</sub>2<sub>1</sub>2 space group with a=b=81.94, c=75.05 Å. 8904 images were collected from 147 crystals, and 8747 images were merged at 1.5 Å resolution using CrystFEL 0.6.3 in the published result. The experiment was carried out on BL2 EH3. Note that the first image in each run is unuseful due to a control problem. These images are included in this upload.
DOI: 10.5281/zenodo.4484116
title: Raw diffraction images of CCP by SF-ROX at SACLA

description: Diffraction images of cytochrome <em>c</em> peroxidase (C<em>c</em>P, PDB code: 7BIU). They were collected using X-ray free electron laser from SACLA at 15 keV with the serial femtosecond rotation crystallography (SF-ROX) method. The MX300-HS CCD detector was used to record images. C<em>c</em>P crystals belong to <em>P</em>2<sub>1</sub>2<sub>1</sub>2<sub>1</sub> space group with a=50.81, b=75.54, c=106.57 Å. 10303 images were collected from 147 crystals, and 9145 images were merged at 1.06 Å resolution using CrystFEL 0.9.1 in the published result. The experiment was carried out on BL2. Images were converted to HDF5 files with measured photon energies.
DOI: 10.5281/zenodo.4484113
title: Raw diffraction images of APX by SF-ROX at SACLA

description: Diffraction images of ascorbate peroxidase (APX, PDB code: 7BI1). They were collected using X-ray free electron laser from SACLA at 10 keV with the serial femtosecond rotation crystallography (SF-ROX) method. The MX300-HS CCD detector was used to record images. APX crystals belong to <em>P</em>4<sub>2</sub>2<sub>1</sub>2 space group with a=b=81.94, c=75.05 Å. 8904 images were collected from 147 crystals, and 8747 images were merged at 1.5 Å resolution using CrystFEL 0.6.3 in the published result. The experiment was carried out on BL2 EH3. Note that the first image in each run is unuseful due to a control problem. These images are included in this upload.
DOI: 10.5281/zenodo.4484115
title: Raw diffraction images of CCP by SF-ROX at SACLA

description: Diffraction images of cytochrome <em>c</em> peroxidase (C<em>c</em>P, PDB code: 7BIU). They were collected using X-ray free electron laser from SACLA at 15 keV with the serial femtosecond rotation crystallography (SF-ROX) method. The MX300-HS CCD detector was used to record images. C<em>c</em>P crystals belong to <em>P</em>2<sub>1</sub>2<sub>1</sub>2<sub>1</sub> space group with a=50.81, b=75.54, c=106.57 Å. 10303 images were collected from 147 crystals, and 9145 images were merged at 1.06 Å resolution using CrystFEL 0.9.1 in the published result. The experiment was carried out on BL2. Images were converted to HDF5 files with measured photon energies.
DOI: 10.15468/8agxg5
title: A new species of the genus Potentilla L. (Rosaceae) from the Tehran province (Iran)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Faghir, Marzieh Beygom, Sadeghi, Samira, Attar, Farideh (2021): A new species of the genus Potentilla L. (Rosaceae) from the Tehran province (Iran). Adansonia (3) 43 (9): 99-106, DOI: 10.5252/adansonia2021v43a9
DOI: 10.6084/m9.figshare.14540886
title: Supplementary Material for: Mapping Telemedicine in German Private Practice Urological Care: Implications for Transitioning beyond the COVID-19 Pandemic

description: <b><i>Background:</i></b> There are limited data on the use and concern of telemedicine among German urologists, and thus, there are no established guidelines for telemedical diagnosis, treatment, and prevention of urological indications. <b><i>Methods:</i></b> An anonymized survey was conducted among German private practice urologists during the 2019 coronavirus disease (COVID-19) pandemic. The χ<sup>2</sup> test, Mann-Whitney U-test, and Kruskal-Wallis test were used for statistical analysis. <b><i>Results:</i></b> 257 urologists were included in the final analysis. Thirty-five (14.0%) of urologists had used telemedicine as part of their consultation, and 221 (86.0%) had not used telemedicine. There was no difference between telemedicine adoption rates between rural and urban settings. Telemedicine users were significantly more satisfied with the information they had received regarding telemedicine issues. Users saw the greatest barrier to telemedicine that patients do not take up the offer of telemedicine. Nonusers were most concerned with unclear indications for telemedicine followed by lesser reimbursements during telemedicine than in-person visitations. Users were significantly more likely to use telemedicine beyond the COVID-19 pandemic. Urologists, who wanted to use the service in the future, wanted an active support by the German society of urology and guidelines for telemedicine. Last, users and nonusers preferred telemedicine for non-acute chronic diseases and follow-up visitations. <b><i>Conclusion:</i></b> Despite the COVID-19 pandemic, telemedicine remains a rarely used service among German private practice urologists. Ultimately, to overcome the current challenges, urologists require an active support for the service through the German Society of Urology and telemedical guidelines.
DOI: 10.21227/vgrg-d823
title: Two-Perspective Dices Dataset for Anomaly Detection

description: Arbitrarily falling dices were photographed individually and monochromatically inside an Ulbricht sphere from two fixed perspectives. Overall, 11 dices with edge size 16 mm were used for 2133 falling experiments repeatedly. 5 of these dices were modified manually to have the following anomalies: drilled holes, missing dots, sawing gaps and scratches. All pictures in the uploaded pickle containers have a resolution of 400 times 400 pixels with normalized grey scale floating point values of 0 (black) through 1 (white).
DOI: 10.6084/m9.figshare.12162156.v1
title: Blocking a chemical communication between <i>Trichoplax</i> organisms leads to their disorderly movement

description: We described an ‘expansion’ phenomenon of the <i>Trichoplax</i> sp. H2. The animals were transferred from algal mats to a Petri dish without food with the subsequent passage into the similar Petri dish. The animals’ motion and receding into the distance at the new place was modelled by the increasing spacing between individuals/objects. A collective behaviour of trichoplaxes was disrupted by the addition of 0.01% Bovine Serum Albumin (BSA), which assumedly blocked an interaction of signalling molecules with receptors. BSA-treated trichoplaxes demonstrated the stochastic motion that is in a good agreement with the model of independent random particles.
DOI: 10.6084/m9.figshare.12162156
title: Blocking a chemical communication between <i>Trichoplax</i> organisms leads to their disorderly movement

description: We described an ‘expansion’ phenomenon of the <i>Trichoplax</i> sp. H2. The animals were transferred from algal mats to a Petri dish without food with the subsequent passage into the similar Petri dish. The animals’ motion and receding into the distance at the new place was modelled by the increasing spacing between individuals/objects. A collective behaviour of trichoplaxes was disrupted by the addition of 0.01% Bovine Serum Albumin (BSA), which assumedly blocked an interaction of signalling molecules with receptors. BSA-treated trichoplaxes demonstrated the stochastic motion that is in a good agreement with the model of independent random particles.
DOI: 10.5519/qd.jbq1vfk4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (263 records)
DOI: 10.6084/m9.figshare.14540910
title: Dataset for Reciprocity vs. commitment in bank marketing strategies

description: Dataset for the paper Reciprocity vs. commitment in bank marketing strategies.
DOI: 10.5281/zenodo.4733883
title: Data for: Avoided damage to the terrestrial carbon sink due to the Montreal Protocol

description: This dataset contains the driving data and model outputs for the paper: “Avoided damage to the terrestrial carbon sink due to the Montreal Protocol” which has been accepted for publication in <em>Nature</em>. The study shows the avoided reduction in the land carbon sink due to the Montreal Protocol. Contents of the dataset: Driving met data based on output from the NIWA-UKCA CCM and a weather generator to produce clear sky shortwave (which was used to produce the incoming UV values). Ozone column and Caldwell-weighted UV fluxes derived from the NIWA-UKCA runs. Clear sky UV scale factor assuming a 3% reduction in NPP per 10% increase in UV. Annual JULES outputs of the terrestrial carbon cycle and other surface fluxes.
DOI: 10.5281/zenodo.4733882
title: Data for: Avoided damage to the terrestrial carbon sink due to the Montreal Protocol

description: This dataset contains the driving data and model outputs for the paper: “Avoided damage to the terrestrial carbon sink due to the Montreal Protocol” which has been accepted for publication in <em>Nature</em>. The study shows the avoided reduction in the land carbon sink due to the Montreal Protocol. Contents of the dataset: Driving met data based on output from the NIWA-UKCA CCM and a weather generator to produce clear sky shortwave (which was used to produce the incoming UV values). Ozone column and Caldwell-weighted UV fluxes derived from the NIWA-UKCA runs. Clear sky UV scale factor assuming a 3% reduction in NPP per 10% increase in UV. Annual JULES outputs of the terrestrial carbon cycle and other surface fluxes.
DOI: 10.6084/m9.figshare.14540943
title: Code in R for the paper Reciprocity vs. commitment in bank marketing strategies

description: Code in R for the paper Reciprocity vs. commitment in bank marketing strategies.
DOI: 10.6084/m9.figshare.14540925
title: Supplementary tables to NEM 3465

description: <b>Supplementary Table S1.</b> Conditions for GC-O/FID.<b>Supplementary Table S2.</b> Conditions of the GC-fractionation system.<b>Supplementary Table S3.</b> GC-MS conditions.<b>Supplementary Table S4.</b> Odour intensity scores and odour character noted in sensory evaluation from garlic cloves infected with <i>Ditylenchus destructor </i>and non-infected garlic cloves.<br><b>Supplementary Table S5.</b> Odour characters and intensity scores obtained by sensory evaluation of non-infected garlic cloves and garlic cloves infected with <i>Dutylenchus destructor</i>.<b>Supplementary Table S6</b>. Identification of distinctive odour-active compounds detected from garlic cloves infected with <i>Ditylenchus destructor</i> using GC-O, GC-F, GC-MS and databases.<br>
DOI: 10.6084/m9.figshare.14540925.v1
title: Supplementary tables to NEM 3465

description: <b>Supplementary Table S1.</b> Conditions for GC-O/FID.<b>Supplementary Table S2.</b> Conditions of the GC-fractionation system.<b>Supplementary Table S3.</b> GC-MS conditions.<b>Supplementary Table S4.</b> Odour intensity scores and odour character noted in sensory evaluation from garlic cloves infected with <i>Ditylenchus destructor </i>and non-infected garlic cloves.<br><b>Supplementary Table S5.</b> Odour characters and intensity scores obtained by sensory evaluation of non-infected garlic cloves and garlic cloves infected with <i>Dutylenchus destructor</i>.<b>Supplementary Table S6</b>. Identification of distinctive odour-active compounds detected from garlic cloves infected with <i>Ditylenchus destructor</i> using GC-O, GC-F, GC-MS and databases.<br>
DOI: 10.6084/m9.figshare.14540928
title: GrowthRegimesandGVCs Excel Data file

description: Data on value added trade, overall trade, economic growth and demand and distribution variables. <br>
DOI: 10.6084/m9.figshare.14540928.v1
title: GrowthRegimesandGVCs Excel Data file

description: Data on value added trade, overall trade, economic growth and demand and distribution variables. <br>
DOI: 10.6084/m9.figshare.13395470.v1
title: Universal markers support a long inter-domain branch between Archaea and Bacteria supplemental material

description: This repository contains sequence alignments, trees, and python scripts used for the paper: <br><br>Universal markers support a long inter-domain branch between Archaea and Bacteria<br><br><br>Constraint_alignments_and_domain_IDs: This dir contains the constraint trees, and the fastas necessary for the AU comparison<br>Dating: This contains all files relevant for the dating analysis<br>Expanded alignments: this contains the various concatenates for the slow vs. fast/ number of markers test (cat1 and cat4 refer to IQTREE rate categories, 1 is slow, 4 is fast)<br>Python scripts: this includes the python scripts needed to calculate AB stem, check monophyly, convert IQTREE rate files into fasta, total tree length, and the python script to write constraint trees (from a simple .tsv)<br>Result_files: this contains the .csvs with all the results used for the paper, as well as the trees from the model/marker tests<br>Annotations_tables: contains the supplementary tables, sheets and scripts for the annotations, including table S1 in 7_Unimarkers_summary
DOI: 10.48366/r76284
title: SemEval-2020 Task 3: Graded Word Similarity in Context Subtask 1

description: Subtask 1 in the "Graded Word Similarity in Context" SemEval-2020 Shared Task aims to predict the change in the similarity ratings of a pair of words when the human annotators are presented with the same word pair within two different contexts. The subtask evaluates systems across four different languages, viz. English, Croatian, Slovene, and Finnish. In this comparison, the top three participating teams are compared for the subtask in each of the four language evaluations, respectively.
DOI: 10.18112/openneuro.ds003343.v2.0.0
title: Disentangling the percepts of illusory movement and sensory stimulation during tendon vibration in the EEG
DOI: 10.5258/soton/d1578
title: Raw data for A Method for the Growth of Uniform Silica Shells on Different Size and Morphology Upconversion Nanoparticles

description: To support article "A Method for the Growth of Uniform Silica Shells on Different Size and Morphology Upconversion Nanoparticles" in Nanoscale Advances
DOI: 10.5281/zenodo.4739037
title: juliussebald/formasam: Data and code for Sebald et al. (2021),Mixing tree species at different spatial scales: The effect of alpha, beta and gamma diversity on disturbance impacts under climate change, Journal of Applied Ecology

description: This projects investigates the effects of different combinations of species diversity and spatial coniguration on forest disturbance impacts on the landscape scale. The github repository contains all data and code that is necessary to reproduce the analysis of the manuscript.
DOI: 10.5281/zenodo.4739036
title: juliussebald/formasam: Data and code for Sebald et al. (2021),Mixing tree species at different spatial scales: The effect of alpha, beta and gamma diversity on disturbance impacts under climate change, Journal of Applied Ecology

description: This projects investigates the effects of different combinations of species diversity and spatial coniguration on forest disturbance impacts on the landscape scale. The github repository contains all data and code that is necessary to reproduce the analysis of the manuscript.
DOI: 10.5281/zenodo.4739061
title: What Do Developers Discuss about End User Human-Centric Issues on GitHub?

description: Human-centric labelled dataset of a random selection of 1244 issue comments from 6 GitHub repositories.
DOI: 10.5281/zenodo.4601054
title: What Do Developers Discuss about End User Human-Centric Issues on GitHub?

description: Human-centric labelled dataset of a random selection of 1244 issue comments from 6 GitHub repositories.
DOI: 10.5258/soton/d1607
title: Dataset for: 10nm SiO2 TM Slot Mode in Laterally Mismatched Asymmetric Fin-Waveguides

description: Data set for paper to be submitted: James Byers, Kapil Debnath, Hideo Arimoto, Muhammad Khaled Husain, Moise Sotto, Joseph Hillier, Kian Kiang, David J. Thomson, Graham T. Reed, Martin Charlton and Shinichi Saito in article "10nm SiO2 TM Slot Mode in Laterally Mismatched Asymmetric Fin-Waveguides" in Frontiers in Physics. https://www.frontiersin.org/articles/10.3389/fphy.2021.659585/abstract
DOI: 10.6084/m9.figshare.14391876.v1
title: Modeling the distribution and movement intensity of the Arabian Leopard <i>Panthera pardus nimr</i> (Mammalia: Felidae)

description: This study attempts to link the distribution and movement rate of the critically endangered Arabian Leopard (<i>Panthera pardus nimr</i>) to environmental and anthropogenic features, and to identify environmental constraints and priority areas for the recovery of leopard in Arabian Peninsula. Generalized linear and additive models were used to fit leopard presence/absence locations to environmental and anthropogenic variables. Movement rates between the polygons of modeled leopard presence were inferred and mapped using the isolation-by-resistance model, where probability values of the species distribution model were treated as those of conductance. Our results suggest that currently the Arabian Leopard prefers to live and move in terrain that has high values of normalized difference vegetation index (NDVI) and is difficult for humans to reach. The current network of protected areas largely under-represents the species suitable habitat only covering its 11%, and most of the survey effort to detect and ensure the survival of the leopard in the peninsula has taken place outside the polygons identified by our models as core areas for the species. Our models coupled with existing data suggest the following scenario of the species biogeography: The Arabian Leopard accumulated genetic and phenotypic differences from its conspecifics at a series of glacial maxima during the last glacial period in the Yemeni refugium, from where it expanded elsewhere in the Holocene warming following the expansion of suitable landscape types. Humans expanded too, eventually restricting the source populations of the leopard to an area intersecting eastern Yemen and western Oman today. Our models may serve as a tool for planning future research and conservation for Arabian Leopard.