cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12961883.v1
title: Metadata record for the manuscript: Circulating tRNA-derived small RNAs (tsRNAs) signature for the diagnosis and prognosis of breast cancer

description: <b>Summary</b><br>

This metadata record provides details of the
data supporting the claims of the related manuscript: “Circulating tRNA-derived
small RNAs (tsRNAs) signature for the diagnosis and prognosis of breast cancer”.

The data consist of four Excel .xlsx format
spreadsheets.

The related study aimed to identify tRNA-derived
small RNAs (tsRNAs) in plasma that could distinguish patients with breast
cancer (BC) from healthy controls. 

<b> </b>

<b>Data
access</b>

The expression data are available in the <i>Gene Expression Omnibus </i>repository under accession: https://identifiers.org/geo:GSE158945. The remaining data generated and/or analysed during the
related study are available as part of this metadata record. Data are as
follows:

Figure_1.xlsx – data underlying Figure 1 of
the manuscript. The spreadsheet contains separate tabs for each subfigure.

Figure_2.xlsx – data underlying Figure 2 of
the manuscript. The spreadsheet contains separate tabs for each subfigure.

Supplementary Figure_2.xlsx – data underlying Supplementary
Figure 2 of the manuscript.

Supplementary Figure_3.xlsx – data underlying Supplementary
Figure 3 of the manuscript.

 

 

 

<b>Name
of Institutional Review Board or ethics committee that approved the study</b>

The institutional ethical committee of the
First Affiliated Hospital with Nanjing Medical University.
DOI: 10.6084/m9.figshare.7194461
title: MOESM9 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 9: Table S8. Â Expression alterations of pseudogenesÂ in all cases with mRNA data.
DOI: 10.6084/m9.figshare.11913054.v1
title: Additional file 5 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 5: Table S5. Target function of differentially expressed miRNAs during grain filling under HN and LN treatments.
DOI: 10.6084/m9.figshare.11913084
title: Additional file 4 of Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility

description: Table S3. Differentially accessible regions during fin regeneration. a DARs with increasing signals in sp7+ cells during fin regeneration. b DARs with decreasing signals in sp7+ cells during fin regeneration. c DARs with increasing signals in sp7− cells during fin regeneration. d DARs with decreasing signals in sp7− cells during fin regeneration.
DOI: 10.6084/m9.figshare.7194455.v1
title: MOESM8 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 8: Table S7. Â 45Â pseudogenes were significantly related to prognosis.
DOI: 10.6084/m9.figshare.7194461.v1
title: MOESM9 of New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma

description: Additional file 9: Table S8. Â Expression alterations of pseudogenesÂ in all cases with mRNA data.
DOI: 10.6084/m9.figshare.14526422.v1
title: Additional file 6 of Comparative genome analysis of multidrug-resistant Pseudomonas aeruginosa JNQH-PA57, a clinically isolated mucoid strain with comprehensive carbapenem resistance mechanisms

description: Additional file 6: Table S6. Detail information of ICEJNPA57
DOI: 10.6084/m9.figshare.14526419
title: Additional file 5 of Comparative genome analysis of multidrug-resistant Pseudomonas aeruginosa JNQH-PA57, a clinically isolated mucoid strain with comprehensive carbapenem resistance mechanisms

description: Additional file 5: Table S5. Detail information of prophages identified in P. aeruginosa JNQH-PQ57 genome
DOI: 10.6084/m9.figshare.14526474
title: Additional file 3 of Identification and characterization of HAK/KUP/KT potassium transporter gene family in barley and their expression under abiotic stress

description: Additional file 3 cis-acting elements in HvHAK genes.
DOI: 10.6084/m9.figshare.11913048.v1
title: Additional file 4 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 4: Table S4. Conserved and novel miRNAs that are differentially expressed during wheat grain development.
DOI: 10.6084/m9.figshare.11913060.v1
title: Additional file 6 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 6: Table S6. Wheat grain miRNAs that are differentially expressed between the HN and LN treatments.
DOI: 10.6084/m9.figshare.11913066.v1
title: Additional file 8 of Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels

description: Additional file 8: Table S7. Oligonucleotide primers used for qRT-PCR assays in this study.
DOI: 10.6084/m9.figshare.14526474.v1
title: Additional file 3 of Identification and characterization of HAK/KUP/KT potassium transporter gene family in barley and their expression under abiotic stress

description: Additional file 3 cis-acting elements in HvHAK genes.
DOI: 10.6084/m9.figshare.11913081
title: Additional file 3 of Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility

description: Table S2. Differentially expressed genes during fin regeneration. a Upregulated genes in sp7+ cells during fin regeneration. b Downregulated genes in sp7+ cells during fin regeneration. c Upregulated genes in sp7− cells during fin regeneration. d Downregulated genes in sp7− cells during fin regeneration.
DOI: 10.6084/m9.figshare.11913081.v1
title: Additional file 3 of Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility

description: Table S2. Differentially expressed genes during fin regeneration. a Upregulated genes in sp7+ cells during fin regeneration. b Downregulated genes in sp7+ cells during fin regeneration. c Upregulated genes in sp7− cells during fin regeneration. d Downregulated genes in sp7− cells during fin regeneration.
DOI: 10.6084/m9.figshare.14526416.v1
title: Additional file 4 of Comparative genome analysis of multidrug-resistant Pseudomonas aeruginosa JNQH-PA57, a clinically isolated mucoid strain with comprehensive carbapenem resistance mechanisms

description: Additional file 4: Table S4. Detail information of GIs identified in P. aeruginosa JNQH-PQ57 genome with IslandPath-DIMOD method
DOI: 10.15468/dl.6yxmez
title: Occurrence Download

description: A dataset containing 1179 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Monitoreo de anidación de la tortuga verde (Chelonia mydas) en las Islas Galápagos"
 ]
}

 The dataset includes 1179 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0397542-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pnrdtf
title: Occurrence Download

description: A dataset containing 203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "Geometry POLYGON((-97.86621 48.80686,-95.75684 37.64903,-81.60645 36.17336,-74.31152 35.88905,-69.91699 40.84706,-65.69824 45.213,-67.89551 48.04871,-72.02637 48.04871,-77.03613 45.08904,-88.38501 48.38379,-92.7356 48.99902,-97.92114 49.08691,-97.86621 48.80686))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Month is June",
 "Month is July",
 "Month is August",
 "Month is September"
 ]
 },
 "TaxonKey is Setophaga virens (J.F.Gmelin, 1789)",
 "Year 2000-2020"
 ]
}

 The dataset includes 203 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0249585-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oufbow
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Jamaica",
 "TaxonKey is Viburnum L."
 ]
}

 The dataset includes 101 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010367-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jf2cdg
title: Occurrence Download

description: A dataset containing 519 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eleocharis geniculata (L.) Roem. & Schult.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America, Canada)"
 ]
}

 The dataset includes 519 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0269746-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jrhtc3
title: Occurrence Download

description: A dataset containing 452 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylopezus ochroleucus (Wied-Neuwied, 1831)"
 ]
}

 The dataset includes 452 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037070-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q993p8
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perezia nutans Less."
 ]
}

 The dataset includes 109 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020026-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k5kjfp
title: Occurrence Download

description: A dataset containing 345 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Year 1970-2020",
 "TaxonKey is Stenanthium (A.Gray) Kunth"
 ]
}

 The dataset includes 345 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010368-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ipz4nj
title: Occurrence Download

description: A dataset containing 4240 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Hystricidae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4240 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007007-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhnbr8
title: Occurrence Download

description: A dataset containing 12051 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Acer saccharum Marshall"
 ]
 },
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2020",
 "DecimalLatitude is greater than or equal to 22.339412732063565",
 "DecimalLatitude is less than or equal to 56.47802094128505",
 "DecimalLongitude is greater than or equal to -89.38477198181909",
 "DecimalLongitude is less than or equal to -51.77540380141015",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 12051 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052491-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7g2re
title: Occurrence Download

description: A dataset containing 696 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "VerbatimScientificName is Pteridaceae"
 ]
}

 The dataset includes 696 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0249996-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r5ca5f
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Switzerland",
 "DatasetKey is Pl@ntNet automatically identified occurrences",
 "Geometry POLYGON((9.17111 46.75134,9.50369 46.83049,9.60919 46.93264,9.6313 47.01004,9.43478 46.89042,9.12717 46.82656,9.17111 46.75134))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cypripedium calceolus L."
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299273-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apadvp
title: Occurrence Download

description: A dataset containing 7014 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Figure 6) Distribution of planktic foraminifera of ODP Hole 159-958A"
 ]
}

 The dataset includes 7014 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010369-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.elbnbq
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Esox lucius Linnaeus, 1758",
 "HasCoordinate is TRUE",
 "Geometry POLYGON((10.32989501953125 63.26787016946243, 10.32989501953125 63.455051146616825, 10.8819580078125 63.455051146616825, 10.8819580078125 63.26787016946243, 10.32989501953125 63.26787016946243))"
 ]
}

 The dataset includes 38 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007008-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9c94bq
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ligularia hookeri (C.B.Clarke) Hand.-Mazz.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 147 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0320291-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39nj7d
title: Occurrence Download

description: A dataset containing 2614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-100.53349 20.85105,-100.5582 20.85169,-100.58018 20.84591,-100.6097 20.84014,-100.61588 20.82474,-100.62481 20.80484,-100.60352 20.77146,-100.57812 20.74513,-100.53898 20.75091,-100.52456 20.76761,-100.51907 20.80035,-100.51975 20.83115,-100.53349 20.85105))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2614 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242404-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dvwviv
title: Occurrence Download

description: A dataset containing 456 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Capra hircus Linnaeus, 1758"
 ]
}

 The dataset includes 456 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010370-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lbols3
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mobula hypostoma (Bancroft, 1831)",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is less than or equal to 1980",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007008-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48apy5
title: Occurrence Download

description: A dataset containing 3305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.4.6_1"
 ]
}

 The dataset includes 3305 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0314259-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8krr2v
title: Occurrence Download

description: A dataset containing 936 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Figure 6) Range chart of dinocysts of ODP Hole 104-642C"
 ]
}

 The dataset includes 936 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010371-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rk7pgy
title: Occurrence Download

description: A dataset containing 36546 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acer saccharinum L."
 ]
}

 The dataset includes 36546 records from 305 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0247436-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wy3gj
title: Occurrence Download

description: A dataset containing 15265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hippoglossus hippoglossus (Linnaeus, 1758))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15265 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052492-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jv325m
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Berberis levis Franch.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 69 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052493-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ox4emn
title: Occurrence Download

description: A dataset containing 117153 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lutra lutra (Linnaeus, 1758)"
 ]
}

 The dataset includes 117153 records from 215 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007008-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ajvq6
title: Occurrence Download

description: A dataset containing 63679 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Braya glabella subsp. purpurascens (R.Br.) W.J.Cody, Cardamine bellidifolia L., Cerastium arcticum Lange, Cerastium regelii Ostenf., Draba arctica J.Vahl, Draba corymbosa R.Br. ex DC., Draba oblongata R.Br. ex DC., Draba pauciflora R.Br., Draba simmonsii Elven & Al-Shehbaz, Draba subcapitata Simmons, Potentilla hyparctica Malte, Potentilla pulchella R.Br., Saxifraga cernua L., Saxifraga cespitosa L., Saxifraga hyperborea R.Br., Saxifraga oppositifolia L., Saxifraga platysepala (Trautv.) Tolm., Stellaria longipes Goldie, Festuca baffinensis Polunin, Luzula confusa Lindeb., Luzula nivalis Laest., 1822, Phippsia algida (Sol.) R.Br., Poa abbreviata R.Br., Puccinellia angustata (R.Br.) E.L.Rand & Redfield, Aulacomnium turgidum (Wahlenb.) Schwägr., Dicranoweisia crispula (Hedw.) Milde, Ditrichum flexicaule (Schwägr.) Hampe, Polytrichastrum alpinum G.L.Smith, 1971, Polytrichum piliferum Hedw., Polytrichum strictum Menzies ex Brid., Racomitrium ericoides (Brid.) Brid., Racomitrium lanuginosum (Hedw.) Brid., Schistidium frigidum H.H.Blom, Anthelia juratzkana (Limpr.) Trevis., Gymnomitrion corallioides Nees, Sphenolobus minutus (Schreb. ex Cranz) Berggr.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1982",
 "DecimalLatitude is greater than or equal to 50"
 ]
}

 The dataset includes 63679 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0320963-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bbdnx
title: Occurrence Download

description: A dataset containing 4879 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Conirostrum rufum Lafresnaye, 1843"
 ]
}

 The dataset includes 4879 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053444-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3rqrr
title: Occurrence Download

description: A dataset containing 8547 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Specimen"
 ]
 },
 "Continent is North America",
 "TaxonKey is Colinus virginianus (Linnaeus, 1758)"
 ]
}

 The dataset includes 8547 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242406-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.