cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15209564
title: Kandinsky - Visium spatial transcriptomics data from human colorectal cancer sample (FFPE)

description: This dataset is accessible under request because it includes sensitive data.

Users wishing to access the dataset will need to sign a Data Sharing Agreement document that will be provided at the time of the request submission.

Please write your request at human-biology@crick.ac.uk.

 

Visium spatial transcriptomics was performed on one CRC FFPE sample according to the manufacturer’s instructions (protocol CG000408 Revision D and CG000409 Revision C). The region of interest was scored on the FFPE block and a 5µm section was cut and placed on the Visium slide inside the 6x6mm2 fiducial frame. The slide was then incubated at 42 °C for 3h, deparaffinized, H&E stained and imaged using an Olympus VS200 slide scanner. Once imaged, the coverslip was removed, and the slide was decrosslinked. Visium Human Transcriptome Probe kit (v1, PN-1000363) was used for transcript hybridisation. Hybridised RNA molecules were released after tissue permeabilization and captured within each spot by barcoded oligonucleotides. Captured RNA molecules were used for sequencing library preparation and sequenced using NextSeq2000. Sequencing depth was calculated to ensure at least 25000 reads for each tissue covered spot. Visium fastq files were processed using spaceranger v2.0 to produce raw gene expression count data.In addition to standard output files generated with spaceranger, the dataset includes:



A1_CR48_TissueType_Anno.csv: spot annotation created via Loupe Browser v6.2. Each spot is classified according to underlying tissue type. Annotation is left empty for spots matching with empty tissue regions.

V12D05-285_CR48_20x_A1.tif: full-resolution Visium H&E image (tif format)

CRC_LCM_Ext_sigs.rds: list object in rds format containing immune (extrinsic) gene signatures described in Acha-Sagredo et al. and used for downstream analysis


All zipped(.zip) folders contained in the dataset (spatial/raw_feature_bc_matrix/filtered_feature_bc_matrix) should be unzipped before trying to load the dataset in R/python with packages like Kandinsky/Seurat/scannpy/squidpy etc.
DOI: 10.25549/inscriptifact-ouc110815753
title: Proto-Sinaitic Inscription 365b

description: [Text Description:] Proto-Sinaitic Inscription ❧ [Text or Publication Number Note:] Sinai 365 ❧ [Excavation Description:] Discovered in 1930 in the tumuli field known as "Camp of the Egyptians" near Serabit el-Khadem ❧ [Medium:] Stone ❧ [Script Note:] Early Alphabetic ❧ [Physical Object Description:] Fragment of a stone plaque, inscribed on both sides, 15 x 12 cm
DOI: 10.25549/inscriptifact-ouc110815790
title: Proto-Sinaitic Inscription 366

description: [Text Description:] Proto-Sinaitic Inscription ❧ [Text or Publication Number Note:] Sinai 366 ❧ [Excavation Description:] Discovered in 1930 near the entrance of Mine L, near the entrance, at Serabit el-Khadem ❧ [Medium:] Stone ❧ [Script Note:] Early Alphabetic ❧ [Physical Object Description:] Trapezoidal stone plaque (complete?), 13 x 9 cm
DOI: 10.25549/inscriptifact-ouc110815739
title: Proto-Sinaitic Inscription 365b

description: [Text Description:] Proto-Sinaitic Inscription ❧ [Text or Publication Number Note:] Sinai 365 ❧ [Excavation Description:] Discovered in 1930 in the tumuli field known as "Camp of the Egyptians" near Serabit el-Khadem ❧ [Medium:] Stone ❧ [Script Note:] Early Alphabetic ❧ [Physical Object Description:] Fragment of a stone plaque, inscribed on both sides, 15 x 12 cm
DOI: 10.25549/inscriptifact-ouc110814633
title: Copper Scroll

description: [Text Description:] ❧ list of buried treasure ❧ [Text or Publication Number Note:] 3Q15 Copper Scroll ❧ [Excavation Description:] Found during survey of cliffs at Qumran in March 1952 by Roland de Vaux and William Reed. ❧ [Medium:] Metal ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 23 oxydized copper half-cylinder segments with incised letters
DOI: 10.25549/inscriptifact-ouc110814676
title: Copper Scroll

description: [Text Description:] ❧ list of buried treasure ❧ [Text or Publication Number Note:] 3Q15 Copper Scroll ❧ [Excavation Description:] Found during survey of cliffs at Qumran in March 1952 by Roland de Vaux and William Reed. ❧ [Medium:] Metal ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 23 oxydized copper half-cylinder segments with incised letters
DOI: 10.25549/inscriptifact-ouc110814666
title: Copper Scroll

description: [Text Description:] ❧ list of buried treasure ❧ [Text or Publication Number Note:] 3Q15 Copper Scroll ❧ [Excavation Description:] Found during survey of cliffs at Qumran in March 1952 by Roland de Vaux and William Reed. ❧ [Medium:] Metal ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 23 oxydized copper half-cylinder segments with incised letters
DOI: 10.25549/inscriptifact-ouc110814613
title: Copper Scroll

description: [Text Description:] ❧ list of buried treasure ❧ [Text or Publication Number Note:] 3Q15 Copper Scroll ❧ [Excavation Description:] Found during survey of cliffs at Qumran in March 1952 by Roland de Vaux and William Reed. ❧ [Medium:] Metal ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 23 oxydized copper half-cylinder segments with incised letters
DOI: 10.25549/inscriptifact-ouc110814647
title: Copper Scroll

description: [Text Description:] ❧ list of buried treasure ❧ [Text or Publication Number Note:] 3Q15 Copper Scroll ❧ [Excavation Description:] Found during survey of cliffs at Qumran in March 1952 by Roland de Vaux and William Reed. ❧ [Medium:] Metal ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 23 oxydized copper half-cylinder segments with incised letters
DOI: 10.15468/dl.7fegne
title: Occurrence Download

description: A dataset containing 1502 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Hyla wrightorum Taylor, 1939)"
 ]
}

 The dataset includes 1502 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003536-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/c03a0e57f1677fbf5cc65ebd4dc4a850
title: Minneapolis-St. Paul, MN Canopy Temperature and Combined Urban Tree Index (CUTI), 2018-2021

description: This dataset includes a series of raster datasets of canopy temperature across Minneapolis-St. Paul, MN at a resolution of approximately 70 meters. There are data from five different warm, summer afternoons from 2018-2021. The canopy temperature data was derived from ECOSTRESS Land Surface Temperature and Emissivity data and high-resolution land cover data using a downscaling approach. Canopy temperature acts as a proxy of canopy health and function, with higher temperatures indicative of higher stress and lower function in the canopy. For each image, we also compute the combined urban tree index (CUTI), a metric we developed that provides an indication of relative benefits from urban canopy which arise from a combination of the amount and function/health of urban canopy (based on the canopy temperature). CUTI ranges from 0-1, with high values indicating areas likely experiencing greater canopy benefits due to greater canopy cover and better canopy health/function.
DOI: 10.15468/dl.zfwq9h
title: Occurrence Download

description: A dataset containing 10286 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zygophyllum L."
 ]
}

 The dataset includes 10286 records from 308 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003535-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7tgxaq
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((15.02 46.67,15.09 46.67,15.09 46.74,15.02 46.74,15.02 46.67))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EX, EW, CR, EN, VU, NT)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012633-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/hkoo5p
title: PDB - 5T5F - Neisseria meningitidis factor H binding protein in complex with monoclonal antibody JAR5, (312K, 39°C, 100 ns): RMSD, SASA, RMSF, Rg, H-bonds

description: PDB - 5T5F - Neisseria meningitidis factor H binding protein in complex with monoclonal antibody JAR5, (312K, 39°C, 100 ns): RMSD, SASA, RMSF, Rg, H-bonds
DOI: 10.7910/dvn/xoc8ai
title: Replication Data for: large mtcars for benchmarks

description: a simulated datasset for benchmarking
DOI: 10.7910/dvn/97nut
title: Senate Unpassed Legislation 1842, Docket 11057, SC1/series 231, Petition of Susan Allen

description: &lt;p&gt;Petition subject: To define rights on railroads &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:11858185"&gt;http://nrs.harvard.edu/urn-3:FHCL:11858185&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: 1842-02-01 &lt;/p&gt; &lt;p&gt;Petition location: Fairhaven &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: Jones Robinson, Fairhaven &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Susan Allen&lt;/li&gt;&lt;li&gt;Hannah P. Drew&lt;/li&gt;&lt;li&gt;Betsey Hitch&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Total signatures: 25 &lt;/p&gt; &lt;p&gt;Female signatures: 25 &lt;/p&gt; &lt;p&gt;Female only signatures: Yes &lt;/p&gt; &lt;p&gt;Identifications of signatories: women, [females], [minors], ["female"], ["others"] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Printed &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: no additional documents &lt;/p&gt; &lt;p&gt;Additional archivist notes: Possibly contains minors, there is a mark that might be an age &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Senate Unpassed 1842, Docket 11057 &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/zd4m1k
title: Replication Data for: 高校图书馆数据监护的流程管理研究

description: 基于数据生命周期的高校图书馆数据监护的流程规范了数据管理具体活动。在配备数据监护服务基础设施和制度后，高校图书馆还面临着各类问题，如数据共享、协同化、元数据与模型、可控词表与分类和领域本体等。据此，文章将基于数据生命周期的数据监护流程划分为七个阶段：收集、评价、组织、处理、描述、访问、再利用数据。同时，流程管理的实施仍需解决文件格式、文档质量、元数据及数据治理的挑战。
DOI: 10.7910/dvn/rkfxda
title: House Unpassed Legislation 1903, H 1132 adopted resolutions, SC1/series 230, Petition of William L. Coats

description: &lt;p&gt;Petition subject: World Legislature &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:25950579"&gt;http://nrs.harvard.edu/urn-3:FHCL:25950579&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Franklin &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: Benjamin C. Dean, Brookline; committee on federal relations &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;William L. Coats&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1903-02-09,1903-02-09 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the House on February 9, 1903 and referred to the committee on federal relations and sent for concurrence and received in the Senate on February 9, 1903 and concurred &lt;/p&gt; &lt;p&gt;Total signatures: 1 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, referred, sent, received, concurred &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 1 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: citizens &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Printed &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: no additional documents &lt;/p&gt; &lt;p&gt;Additional archivist notes: congress of the United States, president, international congress, treaties, legislative body to serve all mankind, race, ["We regard the union of the sovereign states of the United States of America as a fitting illustration of the possible union of the sovereign nations into the recognized body politic of mankind. As the several sovereign states voluntarily relinquished certain of their claims of sovereignty and thus realized a higher political unity, so a grander union of mankind than is possible by international treaties will be realized when the nations, surrendering their claims of sovereignty in such respects as shall be found necessary and practicable, come formally into the unity in which they already exist by the very laws of their being."] &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: House Unpassed 1903, H 1132 adopted resolutions &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/rkgto8
title: Replication Data for: Fluid Borders: Rethinking Historical Geography and Fixed Map Boundaries in Contested Regions

description: Fluid Borders: Rethinking Historical Geography and Fixed Map Boundaries in Contested Region.

This is the replication dataset for the paper listed above. It contains the non-generalized map boundaries with locator IDs for each map in our sample.
DOI: 10.7910/dvn/mp6zdc
title: Staphylococcal Enterotoxin B bound to neutralizing mAb 14g8 (312K, 39°C, 500 ns): RMSD, SASA, RMSF, Rg, H-bond, PDBs

description: Staphylococcal Enterotoxin B bound to neutralizing mAb 14g8 (312K, 39°C, 500 ns): RMSD, SASA, RMSF, Rg, H-bond, PDBs
DOI: 10.7910/dvn/tdsx22
title: Wright Files I-Z Edited; Docketed Case: 17681
DOI: 10.7910/dvn/tykwh3
title: Right diverticulitis rates and our approaches

description: Background: Diverticular disease of colon which is rare before 40 years of age is seen at a 50% frequency over 80 years of age. Approximately 10-25% of these patients experience colonic diverticulitis during their lifetime. Right-sided diverticulosis is a rare condition in Western countries, but is common among Asian countries. The aim of this study is to evaluate the clinical and treatment outcomes of our patients with right colon diverticulitis.
Methods: The demographic and clinical data of 22 patients treated with diagnosis of cecum and right-sided colon diverticulitis between 2014 and 2017 were analyzed. Hinchey staging was performed to patients according to radiological evaluation and clinical findings. Then proportions of demographic and clinical features of the patients according to Hinchey staging and its statistical significance were evaluated.
Results: Our study included 22 patients who had right colon diverticulitis. Female/male ratio was 0.69. 68.1% of the patients were Hinckey stage I and 31.8% were Hinckey stage II, all of which were evaluated by tomography. Mostly Hinchey stage I diverticulitis was found in the right colon (66.7%) and Hinchey stage II diverticulitis in the cecum (57.1%). The mean age of Hinchey stage II patients was higher (63,57 years) and statistically significant (p &lt; 0.05). Two patients had appendectomy and one had right hemicolectomy. Conservative treatment was given to other 19 patients. Mean time of hospitalization was 3,4 days. Four patients who received conservative treatment at two year follow-up had recurrence; No recurrence was seen in patients receiving surgical treatment.
Conclusions: Right colon diverticulitis is usually seen in solitary men in eastern societies under the age of 50. As a treatment option, conservative methods should be preferred especially in uncomplicated cases. Surgical treatment is usually used in the treatment of recurrent and complicated cases.
description: Emergency Medicine International
Manuscript Number 8545840 (Research Article)
(Under Review)
DOI: 10.7910/dvn/mg9nxz
title: Wright Casebook Edited; Docketed Case: 20,549
DOI: 10.7910/dvn/nfnksi
title: Wright Casebook Edited; Docketed Case: 76-1314
DOI: 10.7910/dvn/ndowad
title: Terrorism National Security Survey

description: The Terrorism and National Security Survey (TNSS) is a three-wave national telephone survey conducted between October 2001 and June 2003. The first wave of the survey was conducted as a rolling cross-section over roughly 5 months and included questions about terrorism, military action in Afghanistan, and domestic and international security policies. The second and third waves involved re-interviews with the original respondents, plus a small new cross-section in wave 2, and included questions about terrorism, Saddam Hussein, and the Iraq War
description: This research was supported by Grants SES-0201650, SES-9975063, and SES-0241282 from the National Science Foundation.
DOI: 10.15468/dl.c9r34x
title: Occurrence Download

description: A dataset containing 358 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Juniperus przewalskii Kom."
 ]
}

 The dataset includes 358 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015301-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/saxvpa
title: A16_30379.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/59d45293-b223-4433-8733-8d063892de1b'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/59d45293-b223-4433-8733-8d063892de1b
DOI: 10.7910/dvn/nqap6
title: Senate Unpassed Legislation 1861, leave to withdraw, SC1/series 231, Petition of Aaron A. Bradley

description: &lt;p&gt;Petition subject: Case for relief from judicial cruelty &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:11858749"&gt;http://nrs.harvard.edu/urn-3:FHCL:11858749&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: 1860-02-20 &lt;/p&gt; &lt;p&gt;Petition location: Suffolk &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Aaron A. Bradley&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Total signatures: 1 &lt;/p&gt; &lt;p&gt;Males of color signatures: 1 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: petitioner, [males of color] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: no additional documents &lt;/p&gt; &lt;p&gt;Additional archivist notes: petition may be laid over until the next general court, witness, investigation, investigating committee of the senate at Washington, supreme judicial court, subscribed and sworn to before George Odiorne, justice of the peace &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Senate Unpassed 1861, leave to withdraw &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/r7xdnm
title: Discussion thread for team LIFO the Party

description: Discussion thread for team LIFO the Party. Dale Carnegie principles are used to resolve a common workplace conflict.
DOI: 10.7910/dvn/xzp7dh
title: High-resolution ozone satellite data for the Greater Bay Area (2021-2024)

description: TROPOMI (TROPOspheric Monitoring Instrument) is a high-precision imaging spectrometer installed on the Sentinel-5P satellite launched by the European Space Agency (ESA) in 2017. TROPOMI data has high spatial resolution (up to 7 km × 3.5 km) and covers the entire world once a day. Based on the 2021-2024 TROPOMI satellite ozone observation data, the O3 Greater Bay Area high-resolution monthly average air concentration was mapped through oversampling and other technologies.
DOI: 10.7910/dvn/tgzwzj
title: CES 2022, Team Module of Massachusetts Institute of Technology (MCS)

description: This dataverse contains the data and supporting documents for the CES 2022 Team Module of Massachusetts Institute of Technology. This project was supported by the National Science Foundation, Grant Number SES-2148907.
DOI: 10.7910/dvn/nszm9y
title: Replication data for: The Human Rights Effects of World Bank Structural Adjustment, 1981-2000

description: Does the implementation of a World Bank structural adjustment agreement (SAA) increase or decrease government respect for human rights? Neoliberal theory suggests that SAAs improve economic performance, generating better human rights practices. Critics contend that the implementation of structural adjustment conditions causes hardships and higher levels of domestic conflict, increasing the likelihood that regimes will use repression. Bivariate probit models are used to account for World Bank loan selection criteria when estimating the human rights consequences of structural adjustment. Using a global, comparative analysis for the 1981-2000 period, we examine the effects of structural adjustment on government respect for citizens' rights to freedom from torture, political imprisonment, extra-judicial killing, and disappearances. The findings show that World Bank SAAs worsen government respect for physical integrity rights.
description: Subject: STANDARD DEPOSIT TERMS 1.0 Type: DATAPASS:TERMS:STANDARD:1.0 Notes: This study was deposited under the of the Data-PASS standard deposit terms. A copy of the usage agreement is included in the file section of this study.;
DOI: 10.7910/dvn/nwigjk
title: Replication Data for: The Implications of Pre-Existing Market Power Distortions for Electric Vehicle Tax Policies: Evidence from Colombia

description: This repository comprises a set of functions intended to facilitate the replication of the economic model employed in the paper titled "The Implications of Pre-Existing Market Power Distortions for Electric Vehicle Tax Policies: Evidence from Colombia." Note: Certain data crucial for replication has not been disclosed due to constraints imposed by a Non-Disclosure Agreement (NDA).
DOI: 10.7910/dvn/hidpo2
title: Wright Casebook Edited; Docketed Case: 85-5813