cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7120349
title: Additional file 15: of Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations

description: Table S14. Data matrices for correlation analysis and geographical coordinates of studied populations. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.7120349.v1
title: Additional file 15: of Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations

description: Table S14. Data matrices for correlation analysis and geographical coordinates of studied populations. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.7120331
title: Additional file 14: of Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations

description: Table S13. Outgroup f3 statistic. (XLSX 305 kb)
DOI: 10.6084/m9.figshare.7120331.v1
title: Additional file 14: of Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations

description: Table S13. Outgroup f3 statistic. (XLSX 305 kb)
DOI: 10.6084/m9.figshare.7120319
title: Additional file 13: of Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations

description: Table S12. ALDER vs Globetrotter dates. (XLSX 210 kb)
DOI: 10.6084/m9.figshare.7120319.v1
title: Additional file 13: of Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations

description: Table S12. ALDER vs Globetrotter dates. (XLSX 210 kb)
DOI: 10.6084/m9.figshare.7120283
title: Additional file 11: of Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations

description: Table S10. Globetrotter results. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.7120283.v1
title: Additional file 11: of Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations

description: Table S10. Globetrotter results. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.7120268
title: Additional file 10: of Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations

description: Table S9. Average identity-by-descent-segment share in Siberian populations. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.7120268.v1
title: Additional file 10: of Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations

description: Table S9. Average identity-by-descent-segment share in Siberian populations. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.7120262
title: MOESM2 of Variation of volcanic gas composition during the eruptive period in 2014â 2015 at Nakadake crater, Aso volcano, Japan

description: Additional file 2. Table S1: Volcanic gas species concentration at major SO2 peaks in the plume measured on 12 January, 2015. Table S2 Volcanic gas species concentration at major SO2 peaks in the plume measured on 25 February, 2015. Table S3 Volcanic gas species concentration at major SO2 peaks in the plume measured on 17 March, 2015.
DOI: 10.6084/m9.figshare.7120262.v1
title: MOESM2 of Variation of volcanic gas composition during the eruptive period in 2014â 2015 at Nakadake crater, Aso volcano, Japan

description: Additional file 2. Table S1: Volcanic gas species concentration at major SO2 peaks in the plume measured on 12 January, 2015. Table S2 Volcanic gas species concentration at major SO2 peaks in the plume measured on 25 February, 2015. Table S3 Volcanic gas species concentration at major SO2 peaks in the plume measured on 17 March, 2015.
DOI: 10.6084/m9.figshare.7119896.v1
title: CoNi metal-organic frameworks monolayers: metal nodes-dependent photocatalytic CO2-to-CO conversion

description: Metal-organic frameworks (MOFs) are emerging as promising catalysts towards CO2 photoreduction for providing high-density metal nodes as catalytic active sites. However, an in-depth understanding of metal nodes effect in CO2 photoreduction is still lacking. Through constructing a set of isostructural CoNi based MOFs monolayers (MOLs), herein we unravel the intrinsic relationships between metal nodes and CO2 photoreduction performance. Ni MOLs exhibits spectacular CO selectivity of 97.8 % with a highest apparent quantum yield of 2.2 % among analogous systems, significantly higher than those of Co MOLs. Experiments in dilute CO2 further amplify the superiority of Ni MOLs. Experimental and theoretical investigation demonstrate that initial adsorption of CO2 molecules onto MOLs is the pivotal step. The strong CO2 binding affinity of Ni MOLs is beneficial to stabilize the metal-CO2 adducts and facilitate CO2-to-CO conversion. The universality of the superiority of Ni for CO2 photoreduction has been further demonstrated. This work provides fundamental guidance for the rational design of metal-organic catalysts towards solar-to-fuels conversion.
DOI: 10.6084/m9.figshare.7119890
title: draft v2

description: Laser Surface Texturing
DOI: 10.6084/m9.figshare.7119755
title: A systematic revision of the ectomycorrhizal genus <i>Laccaria</i> from Korea

description: Species of <i>Laccaria</i> (Hydnangiaceae, Basidiomycota) are important in forest ecosystems as ectomycorrhizal fungi. Nine of the 75 described <i>Laccaria</i> species worldwide been reported from Korea. Most of these have European and North American names, and their identities are based solely on morphological features. To evaluate the taxonomy of Korean <i>Laccaria</i>, we used 443 specimens collected between 1981 and 2016 in a phylogenetic analysis based on sequence data from nuc rDNA internal transcribed spacer ITS1-5.8S-ITS2 rDNA (ITS) region, nuc 28S rDNA (28S), RNA polymerase II subunit 2 (<i>rpb2</i>), and translation elongation factor 1-α (<i>tef1</i>). Ten <i>Laccaria</i> species were identified. Three of these were previously reported from Korea: <i>L. bicolor, L. tortilis</i>, and <i>L. vinaceoavellanea. Laccaria alba, L. japonica</i>, and <i>L. murina</i> are confirmed as new reports from Korea. Lastly, four new <i>Laccaria</i> species are described: <i>L. araneosa, L. parva, L. torosa</i>, and <i>L. versiforma</i>. This study supports the general contention that Asian species of ectomycorrhizal fungi may not be conspecific with morphologically similar species from Europe and North America. Furthermore, identification based on morphology alone is often unreliable in <i>Laccaria</i> due to considerable overlap of characters among species. Thus, use of molecular methods is necessary for effective identification. Illustrations of the four newly described species and a taxonomic key to species of <i>Laccaria</i> in Korea are provided.
DOI: 10.6084/m9.figshare.7119752
title: Novel diversity in <i>Lactifluus</i> section <i>Gerardii</i> from Asia: five new species with pleurotoid or small agaricoid basidiocarps

description: The ectomycorrhizal milkcap genus <i>Lactifluus</i> (Russulaceae) is commonly found in tropical and subtropical forests of Southeast Asia. During several sampling expeditions in Thailand, multiple collections of <i>Lactifluus</i> (<i>Lf</i>.) species with pleurotoid or small agaricoid basidiocarps were found. A molecular study was combined with a morphological study, in which the collections were compared with herbarium material. The molecular study indicated that four Thai collections belonged to undescribed species within <i>Lactifluus</i> section <i>Gerardii</i>, as was also the case for herbarium collections of a pleurotoid species from Nepal. One other collection from Thailand appeared closely related to <i>Lf. uyedae</i>, known only from Japan. Five species are described as new in the genus: <i>Lf. auriculiformis, Lf. gerardiellus, Lf. bhandaryi, Lf. pulchrellus</i>, and <i>Lf. raspei</i>.
DOI: 10.6084/m9.figshare.7119755.v1
title: A systematic revision of the ectomycorrhizal genus <i>Laccaria</i> from Korea

description: Species of <i>Laccaria</i> (Hydnangiaceae, Basidiomycota) are important in forest ecosystems as ectomycorrhizal fungi. Nine of the 75 described <i>Laccaria</i> species worldwide been reported from Korea. Most of these have European and North American names, and their identities are based solely on morphological features. To evaluate the taxonomy of Korean <i>Laccaria</i>, we used 443 specimens collected between 1981 and 2016 in a phylogenetic analysis based on sequence data from nuc rDNA internal transcribed spacer ITS1-5.8S-ITS2 rDNA (ITS) region, nuc 28S rDNA (28S), RNA polymerase II subunit 2 (<i>rpb2</i>), and translation elongation factor 1-α (<i>tef1</i>). Ten <i>Laccaria</i> species were identified. Three of these were previously reported from Korea: <i>L. bicolor, L. tortilis</i>, and <i>L. vinaceoavellanea. Laccaria alba, L. japonica</i>, and <i>L. murina</i> are confirmed as new reports from Korea. Lastly, four new <i>Laccaria</i> species are described: <i>L. araneosa, L. parva, L. torosa</i>, and <i>L. versiforma</i>. This study supports the general contention that Asian species of ectomycorrhizal fungi may not be conspecific with morphologically similar species from Europe and North America. Furthermore, identification based on morphology alone is often unreliable in <i>Laccaria</i> due to considerable overlap of characters among species. Thus, use of molecular methods is necessary for effective identification. Illustrations of the four newly described species and a taxonomic key to species of <i>Laccaria</i> in Korea are provided.
DOI: 10.6084/m9.figshare.7119665
title: ratemyprof4.xlsx

description: Ratings of Economics instructors from ratemyprofessors website
DOI: 10.6084/m9.figshare.7119668
title: Data & Code: "Bacterial diversity in the waterholes of the Kruger National Park: an eDNA metabarcoding approach"

description: Data and code to reproduce:<br>Farrell, M.J., Govender, D., Hajibabaei, M., van der Bank, M., Davies, T.J. (2018) "Bacterial diversity in the waterholes of the Kruger National Park: an eDNA metabarcoding approach", Genome doi: 10.1139/gen-2018-0064<b><br></b><b>Scripts</b>1. DADA2 pipeline for quality filtering, denoising, chimera removal, ASV calling, and taxonomy assignment (dada2_pipeline.R)2. Build phylogeny (build_phylo.R) - R script with system calls to QIIME and FastTree3. Community and biodiversity analyses (community_analyses.R)<br><b>Required Data</b>The community analyses can be reproduced with the data files included here. To reproduce the DADA2 pipeline and phylogeny building, the raw sequence reads are archived in the NCBI Sequence Read Archive:<br>BioProject PRJNA490450Accessuib numbers SRR7822814 to SRR7822901<br>In addition you will need the DADA2 formatted training fasta files for SILVA version 128 (https://zenodo.org/record/801832#.W5_UPPMbCEI) and the SILVA 128 release for QIIME (https://www.arb-silva.de/download/archive/qiime/)
DOI: 10.6084/m9.figshare.7119668.v1
title: Data & Code: "Bacterial diversity in the waterholes of the Kruger National Park: an eDNA metabarcoding approach"

description: Data and code to reproduce:<br>Farrell, M.J., Govender, D., Hajibabaei, M., van der Bank, M., Davies, T.J. (2018) "Bacterial diversity in the waterholes of the Kruger National Park: an eDNA metabarcoding approach", Genome doi: 10.1139/gen-2018-0064<b><br></b><b>Scripts</b>1. DADA2 pipeline for quality filtering, denoising, chimera removal, ASV calling, and taxonomy assignment (dada2_pipeline.R)2. Build phylogeny (build_phylo.R) - R script with system calls to QIIME and FastTree3. Community and biodiversity analyses (community_analyses.R)<br><b>Required Data</b>The community analyses can be reproduced with the data files included here. To reproduce the DADA2 pipeline and phylogeny building, the raw sequence reads are archived in the NCBI Sequence Read Archive:<br>BioProject PRJNA490450Accessuib numbers SRR7822814 to SRR7822901<br>In addition you will need the DADA2 formatted training fasta files for SILVA version 128 (https://zenodo.org/record/801832#.W5_UPPMbCEI) and the SILVA 128 release for QIIME (https://www.arb-silva.de/download/archive/qiime/)
DOI: 10.6084/m9.figshare.7119665.v1
title: ratemyprof4.xlsx

description: Ratings of Economics instructors from ratemyprofessors website
DOI: 10.6084/m9.figshare.7119578
title: Infant and infant-directed vocalization examples

description: Three examples of infant vocalizations and one example of an infant-directed adult vocalization. The sounds accompany Figure 1 of my chapter in the forthcoming Cambridge Handbook of Infant Development, edited by Cathie Tamis-LeMonda and Jeff Lockman.
DOI: 10.6084/m9.figshare.7119584.v1
title: Data - Evaluating the SANS 10400 Habitable Room compliance of Entrance Structures to Gated Communities in the City of Tshwane.docx

description: Overall compliance, and all the resulting data which the researcher collected. Example of the site survey used by the researcher to collect the data in a real-world state.
DOI: 10.6084/m9.figshare.7119542
title: A comparative study of terpene composition in different clades of the genus <i>Lavandula</i>

description: The genus <i>Lavandula</i> L. (Lamiaceae) comprises 40 species, of which only a few are used to extract essential oils for perfume and detergent industries. To date, the compound diversity of <i>Lavandula</i> essential oils, and most notably terpene variation amongst species, is poorly documented. In this work, we report the diversity of terpene content in 33 accessions from the subgenera <i>Lavandula</i> and <i>Fabricia</i>. We used these terpenes to distinguish subgenera and sections and to find autapomorphic and synapomorphic traits as taxonomic markers. We demonstrate that terpene composition is not appropriate for phylogenetic reconstruction and chemotaxonomy in <i>Lavandula</i>, but we show nevertheless that terpene diversity allow for distinguishing the two subgenera, <i>Lavandula</i> and <i>Fabricia</i> and for separating the sections, respectively <i>i/Dentatae, Stoechas</i> and <i>Lavandula</i>, and <i>ii/Pterostoechas, Chaetostachys, Subnudae</i> and <i>Hasikenses</i>. Furthermore, amongst terpenes with putative ecological roles, we found that camphor, 1,8-cineole and carvacrol are synapomorphic traits, or at least markers respective of each subgenus, that <i>trans</i>-α-necrodol is an autapomorphic trait of <i>L. stoechas</i> subsp. <i>luisieri</i> and that linalool is either a symplesiomorphic trait or a homoplasic trait. Based on these results, we propose evolutionary hypotheses and future work directions relative to the putative ecological role of these terpenes in other species and to terpene biosynthesis studies in <i>Lavandula</i>.
DOI: 10.6084/m9.figshare.7119542.v1
title: A comparative study of terpene composition in different clades of the genus <i>Lavandula</i>

description: The genus <i>Lavandula</i> L. (Lamiaceae) comprises 40 species, of which only a few are used to extract essential oils for perfume and detergent industries. To date, the compound diversity of <i>Lavandula</i> essential oils, and most notably terpene variation amongst species, is poorly documented. In this work, we report the diversity of terpene content in 33 accessions from the subgenera <i>Lavandula</i> and <i>Fabricia</i>. We used these terpenes to distinguish subgenera and sections and to find autapomorphic and synapomorphic traits as taxonomic markers. We demonstrate that terpene composition is not appropriate for phylogenetic reconstruction and chemotaxonomy in <i>Lavandula</i>, but we show nevertheless that terpene diversity allow for distinguishing the two subgenera, <i>Lavandula</i> and <i>Fabricia</i> and for separating the sections, respectively <i>i/Dentatae, Stoechas</i> and <i>Lavandula</i>, and <i>ii/Pterostoechas, Chaetostachys, Subnudae</i> and <i>Hasikenses</i>. Furthermore, amongst terpenes with putative ecological roles, we found that camphor, 1,8-cineole and carvacrol are synapomorphic traits, or at least markers respective of each subgenus, that <i>trans</i>-α-necrodol is an autapomorphic trait of <i>L. stoechas</i> subsp. <i>luisieri</i> and that linalool is either a symplesiomorphic trait or a homoplasic trait. Based on these results, we propose evolutionary hypotheses and future work directions relative to the putative ecological role of these terpenes in other species and to terpene biosynthesis studies in <i>Lavandula</i>.
DOI: 10.6084/m9.figshare.7119503
title: track.model.output.tar

description: IDL data format of track model output from publication:"Shape of Atlantic tropical cyclone tracks and the Indian monsoon" published in Geophysical Research Letters.<br><br>
DOI: 10.6084/m9.figshare.7119503.v1
title: track.model.output.tar

description: IDL data format of track model output from publication:"Shape of Atlantic tropical cyclone tracks and the Indian monsoon" published in Geophysical Research Letters.<br><br>
DOI: 10.6084/m9.figshare.7119470
title: Inclusive Education and Education for All

description: <i>The Education for All (EFA) movement is a global commitment to provide quality basic education for all children, youth and adults. Inclusive education is also a new approach towards educating the children with diverse abilities andlearning difficulties with that of normal ones within the same manner. It seeks to address the learning needsof all children with a specific focus on those who are vulnerable to marginalization and exclusion. The focus of this paper is to explore the theoretical interrelation between the Inclusive education and Education for all and conclude them with various UNESCO documents and other published articles. The entire documentary analysis in the paper shows the relation between inclusive educationand Education for All with various perspectives. The paper also shows various implications of inclusive Education as a strategy. The theoretical analysis indicates that inclusive education as an integral part of Education for all. </i>
DOI: 10.6084/m9.figshare.7117928
title: Phylogenetic Trees & Data

description: Phylogenetic trees in nexus format of parasitic weevils within the genera <i>Gymnetron</i> and <i>Rhinusa</i>.Lists of taxa with coded traits of host plant use in csv format.<br>Codes for plant families:0 = Scrophulariaceae1 = PlantaginaceaeCodes for parasitic behavior on different plant organs:1 = Roots<br>2 = Stems3 = Fruits & seed capsulesCodes for galling behavior:0 = Non-galler1 = Gall inducer<br>
DOI: 10.6084/m9.figshare.7117934
title: Raw data and scripts from "Blockchain Electricity Trading Under Demurrage"

description: Just the GAMS script and optimisation results underpinning this letter submitted to IEEE Power Engineering Letters.<br>
DOI: 10.6084/m9.figshare.7117934.v1
title: Raw data and scripts from "Blockchain Electricity Trading Under Demurrage"

description: Just the GAMS script and optimisation results underpinning this letter submitted to IEEE Power Engineering Letters.<br>
DOI: 10.6084/m9.figshare.7117913
title: Chaotic fluctuations in mitochondrial function under oxidative stress. SOD2 concentrations of 0.0216733 mM

description: These chaotic time series of mitochondrial dynamics under conditions of oxidative stress are analyzed in detail in Kembro et al. 2018. Mitochondrial chaotic dynamics: Redox-energetic behavior at the edge of stability. Sci. Rep. (in press)<br><br>.Mitochondrial model used was described in the project overview and in detail (Kembro et al. 2013. Biophys J 104(2):332-343; Kembro et al., 2014. Front Physiol 5:257).<br><b>Analytical methods. </b>Numerical integration of the ME-R model equations was performed with MatCont 2.4 in MATLAB 7.1, until steady-state solutions were obtained (i.e., when the magnitude of each time derivative was -10). Time series with duration of at least 6e<sup>6</sup> ms were constructed by numerical integration of model equations. To allow transient states to vanish, the system was computed during a time lapse of 2 e<sup>8</sup> ms. The solutions were then evaluated with the function deval.m in MATLAB R2017a to obtain a time series with constant sampling frequency at 1ms. All studies were performed using the parameter setting optimized in our previous work (Kembro et al. 2013. Biophys J 104(2):332-343; Kembro et al., 2014. Front Physiol 5:257), with ADPm = 0.01mM, i.e. consistent with energized mitochondria under state 4 respiration.The two .txt file represents the time reference and the time series of variables output of the model, in order from left to right column:1) Mitochondrial Ca+;2) Mitochondrial ADP; 3) Membrane potential; 4)Mitocondrial NADH; 5) Mitochondrial H+; 6) Mitochondrial Phosfate, Pi; 7) Isocitrate; 8) a-ketoglutarate; 9) Succinyl CoA; 10) Succinate; 11) Fumarate; 12) Malate; 13) Oxaloacetate; 14) NADPH; 15) Mitochondrial superoxide; 16) Extramitochondrial superoxide; 17) Mitochondrial hydrogen peroxide; 18) Extramitochondrial hydrogen peroxide; 19) Mitochondrial GSH; 20) Extramitochondrial GSH; 21)Mitochondrial GSSG; 22) Mitochondrial TrxSH2; 23) ExtramitochondrialTrxSH; 24)Mitochondrial PSSGm; 25) Extramitochondrial PSSG<br><i>The parameter settings were</i>:Model-simulated time series were calculated with 0.0216733 mM of SOD2, Shunt=0.04, SOD1 9.7 10<sup>-5</sup> mM. External superoxide perturbation: amplitude=1 10<sup>-7</sup> mM, period =30 s.
DOI: 10.6084/m9.figshare.7117913.v1
title: Chaotic fluctuations in mitochondrial function under oxidative stress. SOD2 concentrations of 0.0216733 mM

description: These chaotic time series of mitochondrial dynamics under conditions of oxidative stress are analyzed in detail in Kembro et al. 2018. Mitochondrial chaotic dynamics: Redox-energetic behavior at the edge of stability. Sci. Rep. (in press)<br><br>.Mitochondrial model used was described in the project overview and in detail (Kembro et al. 2013. Biophys J 104(2):332-343; Kembro et al., 2014. Front Physiol 5:257).<br><b>Analytical methods. </b>Numerical integration of the ME-R model equations was performed with MatCont 2.4 in MATLAB 7.1, until steady-state solutions were obtained (i.e., when the magnitude of each time derivative was -10). Time series with duration of at least 6e<sup>6</sup> ms were constructed by numerical integration of model equations. To allow transient states to vanish, the system was computed during a time lapse of 2 e<sup>8</sup> ms. The solutions were then evaluated with the function deval.m in MATLAB R2017a to obtain a time series with constant sampling frequency at 1ms. All studies were performed using the parameter setting optimized in our previous work (Kembro et al. 2013. Biophys J 104(2):332-343; Kembro et al., 2014. Front Physiol 5:257), with ADPm = 0.01mM, i.e. consistent with energized mitochondria under state 4 respiration.The two .txt file represents the time reference and the time series of variables output of the model, in order from left to right column:1) Mitochondrial Ca+;2) Mitochondrial ADP; 3) Membrane potential; 4)Mitocondrial NADH; 5) Mitochondrial H+; 6) Mitochondrial Phosfate, Pi; 7) Isocitrate; 8) a-ketoglutarate; 9) Succinyl CoA; 10) Succinate; 11) Fumarate; 12) Malate; 13) Oxaloacetate; 14) NADPH; 15) Mitochondrial superoxide; 16) Extramitochondrial superoxide; 17) Mitochondrial hydrogen peroxide; 18) Extramitochondrial hydrogen peroxide; 19) Mitochondrial GSH; 20) Extramitochondrial GSH; 21)Mitochondrial GSSG; 22) Mitochondrial TrxSH2; 23) ExtramitochondrialTrxSH; 24)Mitochondrial PSSGm; 25) Extramitochondrial PSSG<br><i>The parameter settings were</i>:Model-simulated time series were calculated with 0.0216733 mM of SOD2, Shunt=0.04, SOD1 9.7 10<sup>-5</sup> mM. External superoxide perturbation: amplitude=1 10<sup>-7</sup> mM, period =30 s.
DOI: 10.6084/m9.figshare.7117928.v1
title: Phylogenetic Trees & Data

description: Phylogenetic trees in nexus format of parasitic weevils within the genera <i>Gymnetron</i> and <i>Rhinusa</i>.Lists of taxa with coded traits of host plant use in csv format.<br>