cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5657050.v1
title: Additional file 1: of Implementation fidelity trajectories of a health promotion program in multidisciplinary settings: managing tensions in rehabilitation care

description: Data fidelity scoresR2. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5657029
title: Additional file 3: Video 1. of MUNC18–1 gene abnormalities are involved in neurodevelopmental disorders through defective cortical architecture during brain development

description: Time-lapse imaging of control cortical neurons migrating in upper IZ - lower CP. (ZIP 12000 kb)
DOI: 10.6084/m9.figshare.5657029.v1
title: Additional file 3: Video 1. of MUNC18–1 gene abnormalities are involved in neurodevelopmental disorders through defective cortical architecture during brain development

description: Time-lapse imaging of control cortical neurons migrating in upper IZ - lower CP. (ZIP 12000 kb)
DOI: 10.6084/m9.figshare.5657017
title: MOESM1 of Functional dissection of Drosophila melanogaster SUUR protein influence on H3K27me3 profile

description: Additional file 1: Table S1. Coordinates of 193 HMM-defined SSRs. First columnâ chromosome name, second columnâ start coordinate, third columnâ end coordinate. Each line corresponds to a single SSR.
DOI: 10.6084/m9.figshare.5657002
title: Additional file 8: of Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

description: An r-script containing the “Tv_threshold” function for Tv cut-off calculation and the “flag_probability” function to calculate the probability that variants occur at least with a frequency f in the database, together with practical examples. (R 8 kb)
DOI: 10.6084/m9.figshare.5656990
title: Additional file 7: of Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

description: Allele frequency cut-offs for autosomal dominant disorders for various database sizes and disease prevalence. (XLS 60Â kb)
DOI: 10.6084/m9.figshare.5656981
title: Additional file 3: of The insect pathogenic bacterium Xenorhabdus innexi has attenuated virulence in multiple insect model hosts yet encodes a potent mosquitocidal toxin

description: List of X. nematophila ATCC19061 genes present in X. bovienii SS-2004, X. doucetiae FRM16, but absent in X. innexi HGB1681. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.5656981.v1
title: Additional file 3: of The insect pathogenic bacterium Xenorhabdus innexi has attenuated virulence in multiple insect model hosts yet encodes a potent mosquitocidal toxin

description: List of X. nematophila ATCC19061 genes present in X. bovienii SS-2004, X. doucetiae FRM16, but absent in X. innexi HGB1681. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.5656978
title: Additional file 6: of Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

description: Allele frequency cut-offs for autosomal recessive disorders for various database sizes and disease prevalence. (XLS 73Â kb)
DOI: 10.6084/m9.figshare.5656978.v1
title: Additional file 6: of Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

description: Allele frequency cut-offs for autosomal recessive disorders for various database sizes and disease prevalence. (XLS 73Â kb)
DOI: 10.6084/m9.figshare.5656957
title: Additional file 5: of Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

description: Variants inside the variant database flagged by the quantile-based approach for further investigation. (XLS 42Â kb)
DOI: 10.6084/m9.figshare.5656945
title: Additional file 4: of Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

description: Variants associated with Miller syndrome and their allelic frequency in the 1000 Genomes variant database. (XLS 49Â kb)
DOI: 10.6084/m9.figshare.5656945.v1
title: Additional file 4: of Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

description: Variants associated with Miller syndrome and their allelic frequency in the 1000 Genomes variant database. (XLS 49Â kb)
DOI: 10.6084/m9.figshare.5656927
title: Additional file 10: of The insect pathogenic bacterium Xenorhabdus innexi has attenuated virulence in multiple insect model hosts yet encodes a potent mosquitocidal toxin

description: AntiSMASH analysis of NRPS and PKS genes from XIS1_460105 to XIS1_460116. (ZIP 2696Â kb)
DOI: 10.6084/m9.figshare.5656927.v1
title: Additional file 10: of The insect pathogenic bacterium Xenorhabdus innexi has attenuated virulence in multiple insect model hosts yet encodes a potent mosquitocidal toxin

description: AntiSMASH analysis of NRPS and PKS genes from XIS1_460105 to XIS1_460116. (ZIP 2696Â kb)
DOI: 10.6084/m9.figshare.5656918
title: Additional file 7: of Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

description: R script file for statistical analysis. (R 77 kb)
DOI: 10.6084/m9.figshare.5656918.v1
title: Additional file 7: of Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

description: R script file for statistical analysis. (R 77 kb)
DOI: 10.6084/m9.figshare.5656891
title: Additional file 6: of Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

description: Preprocessed, quality filtered raw sequence data file. (FASTA 74532 kb)
DOI: 10.6084/m9.figshare.5656891.v1
title: Additional file 6: of Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

description: Preprocessed, quality filtered raw sequence data file. (FASTA 74532 kb)
DOI: 10.6084/m9.figshare.5656876
title: Additional file 5: of Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

description: Phylogenetic tree file for creation of phyloseq object. (TRE 7216 kb)
DOI: 10.6084/m9.figshare.5656876.v1
title: Additional file 5: of Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

description: Phylogenetic tree file for creation of phyloseq object. (TRE 7216 kb)
DOI: 10.6084/m9.figshare.5656855
title: Additional file 4: of Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

description: OTU community table file for creation of phyloseq object. (BIOM 1676 kb)
DOI: 10.6084/m9.figshare.5656855.v1
title: Additional file 4: of Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

description: OTU community table file for creation of phyloseq object. (BIOM 1676 kb)
DOI: 10.6084/m9.figshare.5656837
title: Additional file 3: of Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

description: Pipeline for sequence data processing. (TXT 18 kb)
DOI: 10.6084/m9.figshare.5656837.v1
title: Additional file 3: of Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

description: Pipeline for sequence data processing. (TXT 18 kb)
DOI: 10.6084/m9.figshare.5656828
title: Additional file 2: of Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

description: Metadata file for creation of phyloseq object. (TXT 14 kb)
DOI: 10.6084/m9.figshare.5656828.v1
title: Additional file 2: of Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

description: Metadata file for creation of phyloseq object. (TXT 14 kb)
DOI: 10.6084/m9.figshare.5656159
title: DNA sequence data: Koala mtDNA, C. pecorum ompA and KoRV-A env

description: These data are utilised in the thesis entitled “<em>Genetic data from koala scats: method development and investigation of a unique population in South Gippsland</em>”. FASTA files contain DNA sequence data for the:Koala mtDNA control regionKoala mtDNA cytochrome b geneKoala mtDNA NADH dehydrogenase subunit 5 and 6 genes<em>Chlamydia pecorum ompA</em> gene detected in koala scatsKoRV-A <em>env</em> gene detected in koala DNA.<br>
DOI: 10.6084/m9.figshare.5656135
title: Underlying data

description: This data, along with the information presented in our paper will be sufficient for those wishing to reproduce our results.<br>
DOI: 10.6084/m9.figshare.5656135.v1
title: Underlying data

description: This data, along with the information presented in our paper will be sufficient for those wishing to reproduce our results.<br>
DOI: 10.6084/m9.figshare.5656123
title: Data from "Optimal survey designs for environmental DNA sampling" to appear in Methods in Ecology and Evolution.

description: Data associated with the paper: Lugg WH, Griffiths J, van Rooyen AR, Weeks AR, Tingley R (2018) Optimal survey designs for environmental DNA sampling. <em>Methods in Ecology and Evolution.</em>
DOI: 10.6084/m9.figshare.5656123.v1
title: Data from "Optimal survey designs for environmental DNA sampling" to appear in Methods in Ecology and Evolution.

description: Data associated with the paper: Lugg WH, Griffiths J, van Rooyen AR, Weeks AR, Tingley R (2018) Optimal survey designs for environmental DNA sampling. <em>Methods in Ecology and Evolution.</em>
DOI: 10.6084/m9.figshare.5656120
title: Koala database: sample details and genetic data

description: These data are utilised in the thesis entitled “<em>Genetic data from koala scats: method development and investigation of a unique population in South Gippsland</em>”. This Microsoft Access file contains details of:individual koalas sampled,replicate and consensus genotypes using 12 microsatellite markers,mitochondrial DNA (mtDNA) haplotypes for the mtDNA control region, the cytochrome b gene and DNA spanning genes for NADH dehydrogenase subunits 5 and 6,results of PCR assays for the detection of <em>Chlamydia</em> <em>pecorum</em> and koala retrovirus (KoRV-A) and genotypes for the <em>C</em>. <em>pecorum</em> <em>ompA</em> gene and KoRV-A <em>env</em> gene for some positive samples.Sequence data for haplotypes and genotypes can be found here: https://doi.org/10.6084/m9.figshare.5656159.v1 <br>
DOI: 10.6084/m9.figshare.5656111
title: Simulated 3D filaments with acquisition of 100 different focal planes

description: This is the simulation data for 100 different focal planes.
DOI: 10.6084/m9.figshare.5656111.v1
title: Simulated 3D filaments with acquisition of 100 different focal planes

description: This is the simulation data for 100 different focal planes.
DOI: 10.6084/m9.figshare.5656069
title: Spreadsheet of journal subscription costs

description: Derived expenditure data using best understanding of universities' replies, and using constant exchange rate of $NZ1 = A$0.90= US$0.77 = EUR0.63. Figures given in US$. Estimated EFT academic/research staff and student numbers obtained by reading each university's 2016 report and spot-checking that numbers had not changed greatly in the period 2013-2016.
DOI: 10.6084/m9.figshare.5656054
title: Universities' final replies

description: Official email replies from the universities giving the requested data.
DOI: 10.6084/m9.figshare.5656039
title: Post-remagnetisation vertical axis rotation and tilting of the Murihiku Terrane (North Island, New Zealand)

description: We collected palaeomagnetic sample sets from Murihiku Terrane, North Island to constrain its palaeolatitude during the Late Triassic–Jurassic. The majority of the sample host rocks were remagnetised. However, a few samples show a magnetic signal that possibly recorded a primary remanent magnetisation. These samples preliminarily indicate that Murihiku Terrane was located at c. 63°S during the Early Jurassic. The remagnetised samples reveal significant post-remagnetisation tectonic rotation and tilting of the host rocks. We estimated an 83 ± 5 Ma timing of remagnetisation by plotting the palaeolatitude data on the apparent polar wander path of northern Zealandia. Samples from southernmost sites have lower inclination, which we interpret as reflecting eastward post-remagnetisation tilt of this region by 20°. In addition, declination data indicate large-scale post-remagnetisation rotation of Port Waikato and Awakino Gorge areas. This study contributes to the ongoing debate on the age and tectonic origin of oroclines in New Zealand basement.
DOI: 10.6084/m9.figshare.5656039.v1
title: Post-remagnetisation vertical axis rotation and tilting of the Murihiku Terrane (North Island, New Zealand)

description: We collected palaeomagnetic sample sets from Murihiku Terrane, North Island to constrain its palaeolatitude during the Late Triassic–Jurassic. The majority of the sample host rocks were remagnetised. However, a few samples show a magnetic signal that possibly recorded a primary remanent magnetisation. These samples preliminarily indicate that Murihiku Terrane was located at c. 63°S during the Early Jurassic. The remagnetised samples reveal significant post-remagnetisation tectonic rotation and tilting of the host rocks. We estimated an 83 ± 5 Ma timing of remagnetisation by plotting the palaeolatitude data on the apparent polar wander path of northern Zealandia. Samples from southernmost sites have lower inclination, which we interpret as reflecting eastward post-remagnetisation tilt of this region by 20°. In addition, declination data indicate large-scale post-remagnetisation rotation of Port Waikato and Awakino Gorge areas. This study contributes to the ongoing debate on the age and tectonic origin of oroclines in New Zealand basement.
DOI: 10.6084/m9.figshare.5656018
title: DataRepository_ImpactSecondaryBasins

description: Historical bathymetry Western Scheldt Estuary, Delft3D model output data <br>
DOI: 10.6084/m9.figshare.5655970
title: Extreme Quantile Estimation for Autoregressive Models

description: A quantile autoregresive model is a useful extension of classical autoregresive models as it can capture the influences of conditioning variables on the location, scale, and shape of the response distribution. However, at the extreme tails, standard quantile autoregression estimator is often unstable due to data sparsity. In this article, assuming quantile autoregresive models, we develop a new estimator for extreme conditional quantiles of time series data based on extreme value theory. We build the connection between the second-order conditions for the autoregression coefficients and for the conditional quantile functions, and establish the asymptotic properties of the proposed estimator. The finite sample performance of the proposed method is illustrated through a simulation study and the analysis of U.S. retail gasoline price.
DOI: 10.6084/m9.figshare.5655805
title: Raw Data in support of 'Evolution and mechanics of mixed phospholipid fibrinogen monolayers' by Ian Williams and Todd M. Squires

description: Raw data associated with manuscript 'Evolution and mechanics of mixed phospholipid fibrinogen monolayers' by Ian Williams and Todd M. Squires.
DOI: 10.6084/m9.figshare.5655805.v1
title: Raw Data in support of 'Evolution and mechanics of mixed phospholipid fibrinogen monolayers' by Ian Williams and Todd M. Squires

description: Raw data associated with manuscript 'Evolution and mechanics of mixed phospholipid fibrinogen monolayers' by Ian Williams and Todd M. Squires.
DOI: 10.6084/m9.figshare.5650282
title: Livelihoods assets data

description: Livelihoods assets indicators calculated to identify different livelihoods assets at the level of a community. These indicators allow comparison between communities.
DOI: 10.6084/m9.figshare.5650282.v2
title: Livelihoods assets data

description: Livelihoods assets indicators calculated to identify different livelihoods assets at the level of a community. These indicators allow comparison between communities.
DOI: 10.6084/m9.figshare.5650243
title: Methods documents Matura Livelihoods Assesmment

description: Household questionnaire, community meeting discussion topics list and topics list for interviews with community-based organisations, used for the livelihoods assessment in communities surrounding Matura National Park and protected coastal zones, Trinidad.
DOI: 10.6084/m9.figshare.5650243.v1
title: Household questionnaire Matura Livelihoods Assesmment

description: Household questionnaire used for the livelihoods assessment in communities surrounding Matura national Park, Trinidad.
DOI: 10.6084/m9.figshare.5650243.v2
title: Household questionnaire Matura Livelihoods Assesmment

description: Household questionnaire, community meeting discussion topics list and topics list for interviews with community-based organisations, used for the livelihoods assessment in communities surrounding Matura National Park and protected coastal zones, Trinidad.
DOI: 10.6084/m9.figshare.5650243.v3
title: Methods documents Matura Livelihoods Assesmment

description: Household questionnaire, community meeting discussion topics list and topics list for interviews with community-based organisations, used for the livelihoods assessment in communities surrounding Matura National Park and protected coastal zones, Trinidad.
DOI: 10.6084/m9.figshare.5650156
title: S2_table Primers

description: A list of primers for newly discovered viruses in associated paper
DOI: 10.6084/m9.figshare.5650156.v1
title: Untitled Item

description: A list of primers for newly discovered viruses in associated paper
DOI: 10.6084/m9.figshare.5650150
title: Poster de ORCID

description: <i>Poster de ORCID, presentado por Ana Cardoso el día 12 de octubre de 2017 en OpenCon LatAm. (Nota que el poster tiene dos partes.)</i>
DOI: 10.6084/m9.figshare.5650150.v1
title: Poster de ORCID

description: <i>Poster de ORCID, presentado por Ana Cardoso el día 12 de octubre de 2017 en OpenCon LatAm. (Nota que el poster tiene dos partes.)</i>
DOI: 10.6084/m9.figshare.5650147
title: S1_table Known Drosophila viruses in Dsuz

description: A list of known Drosophila viruses detected in pools of D. suzukii from the UK and Japan
DOI: 10.6084/m9.figshare.5650132
title: S3_data Virome of D. suzukii

description: Raw trees (newick) from which figure trees are subsampled
DOI: 10.6084/m9.figshare.5650132.v1
title: S3_data Virome of D. suzukii

description: Raw trees (newick) from which figure trees are subsampled
DOI: 10.6084/m9.figshare.5650126
title: Two phase flow through rough fractures

description: The simulation results are from solving the two-phase flow through normally-distributed rough fractures with a broad range of roughness (0.1-0.4) and correlation length (0.001-0.1m) of aperture field; the total fracture length L=0.1m. Each given roughness and correlation length has its own sub-folder with 100 realizations. Moreover, we conducted two phase flow simulations with increasing pressure gradient (as denoted by P_nw in Pascal).
DOI: 10.6084/m9.figshare.5650117
title: S2_data Dsuz virus alignments

description: Raw alignments (fasta) of D. suzukii viruses to closest relatives as identified by Blast.
DOI: 10.6084/m9.figshare.5650117.v1
title: Dsuz virus alignments

description: Raw alignments (fasta) of D. suzukii viruses to closest relatives as identified by Blast.
DOI: 10.6084/m9.figshare.5649829
title: S1_data All raw virus contigs

description: This file contains virus-like contigs from assembly with Trinity, as described in the associated manuscript.
DOI: 10.6084/m9.figshare.5649829.v1
title: All raw virus contigs

description: This file contains virus-like contigs from assembly with Trinity, as described in the associated manuscript.
DOI: 10.6084/m9.figshare.5649748
title: Birth alive

description: Number of birth alives in Brazil, for 2016
DOI: 10.6084/m9.figshare.5649736
title: Microcephaly

description: Microcephaly incidence in Brazil, by epidemiological week, in 2016.
DOI: 10.6084/m9.figshare.5649727
title: HormoneBase

description: The HormoneBase database contains compiled measures of steroid hormone levels (androgens and glucocorticoids) from free-living populations of vertebrates to facilitate large-scale comparative analyses.
DOI: 10.6084/m9.figshare.5649727.v1
title: HormoneBase

description: The HormoneBase database contains compiled measures of steroid hormone levels (androgens and glucocorticoids) from free-living populations of vertebrates to facilitate large-scale comparative analyses.
DOI: 10.6084/m9.figshare.5649706
title: ZIKV incidence by epidemiological week in Brazil.csv

description: ZIKV incidence by epidemiological week in Brazil
DOI: 10.6084/m9.figshare.5649625
title: Supplementary Material for: Extreme Surgical Maneuvers in Fungal Endophthalmitis

description: <b><i>Purpose:</i></b> To present the different evolution of 2 cases of endophthalmitis caused by Fusarium solani, an aggressive filamentous fungus, depending on the medical and surgical treatment performed. <b><i>Methods:</i></b> We present 2 cases of endophthalmitis caused by Fusarium solani. Topical, intrastromal, intravitreal, and systemic antifungal treatment (natamycin, voriconazole, amphotericin B) failed in both cases. Corneal perforation took place in one of them, being unsuccessfully treated with cyanoacrylate and several amniotic membrane transplants. It became necessary to perform a hot penetrating keratoplasty (PK) in both patients. The lenses were removed, and the microbiological analysis showed their colonization by Fusarium solani. In one of the cases, a second PK and a more aggressive pars plana vitrectomy (PPV) were performed after corneal recurrence detected by confocal microscopy, as well as the following therapeutic intra- and postoperative maneuvers: anterior chamber washing with povidone-iodine 5% for 1 min; iridectomy of the infiltrated regions; aspiration of the fungal colonies with vitrector; several air/fluid/amphotericin/voriconazole exchanges during PPV; endodiathermy and endophotocoagulation of the chorioretinitis foci; and intrascleral angle injections of voriconazole and amphotericin. <b><i>Results:</i></b> These were the only cases of endophthalmitis caused by Fusarium attended to at our hospital during the last 10 years. In the case in which PPV was performed without those maneuvers, endophthalmitis rapidly recurred in a more aggressive way, so finally it became necessary to eviscerate the globe. On the other hand, in the patient who underwent PPV with the specific surgical maneuvers and postoperative procedures described above, we could preserve the eye and even a vision of hand motion without an intraocular lens. <b><i>Conclusions:</i></b> The main objectives of these surgical procedures are to control the fungal infection and to preserve the ocular globe. It is essential to eliminate all ocular structures (iris, lens, vitreous, etc.) affected by this strain of fungus in order to reduce the risk of recurrence. When indicated, early surgery with the appropriate maneuvers detailed above may make an evisceration unnecessary and even recover some visual acuity.