cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34808/66za-te64
title: Nodular melanoma - Male, 74 - Tissue image [5300730025864381]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 74Clinical description: 1,1 x 1,1 x 0,3 cm brown ulcerated lesion of skin of face.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: NEVI AND MELANOMASDiagnosis: Nodular melanomaResult of the histopathological examination: Melanoma of skin (nodular type): SOX-10+, S100+, Melan A-, CKAE1/AE3-, EMA-, Ki-67 80%. Epithelioid cells, ulceration is present, mitotic index: 19 mitoses/1mm2, TILs-NON-BRISK, Clark-IV, Breslow- 2,5 mm, pT3b. Regression is present. Complete excision.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of faceType of staining: positive/IHCStaining: Not applicableAntibody: CK PAN (AE1/AE3)Technology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/n2wc-6v69
title: Brenner tumor, NOS - Female, 71 - Tissue image [5300730025896811]

description: This is the histopathological image of OVARY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 71Clinical description: Tumor of right ovary.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: FIBROEPITHELIAL NEOPLASMSDiagnosis: Brenner tumor, NOSResult of the histopathological examination: Benign Brenner tumor and seromucinous cystadenoma of ovary.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OVARYTissue: OvaryType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/qv2x-ym77
title: Leiomyoma, NOS - Female, 56 - Tissue image [5300730025863171]

description: This is the histopathological image of SMALL INTESTINE tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 56Clinical description: CT: 40 x 50 mm tumor of small intestine.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: MYOMATOUS NEOPLASMSDiagnosis: Leiomyoma, NOSResult of the histopathological examination: Leiomyoma with bizarre nuclei: SMA+, DES+, CD117-, DOG1-, CKAE1/AE3-, CD34-, S100-, Ki-67 5%, Mitotic index: 2 mitoses/10 HPF.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: SMALL INTESTINETissue: Small intestine, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/kkkn-8994
title: Melanoma, metastatic - Male, 63 - Tissue image [5300730025865461]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 63Clinical description: History of melanoma. PET scans: numerous metastases.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: NEVI AND MELANOMASDiagnosis: Melanoma, metastaticResult of the histopathological examination: Metastasis of melanoma to lymph node: SOX10+, S100+, Melan-A +.Sample:Material: FFPECollecting method: Excision of lesionsTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Hypogastric lymph nodeType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.10296206
title: Fruit quality in Hass avocado and its relationships with different growing areas under tropical zones

description: ABSTRACT Avocado is currently an important crop in Colombia, given its growth in planted area and the increase in exports. The destination market of Colombian avocado is mainly international, and its quality is outstanding. However, the physical and chemical characteristics associated with the quality of the avocados produced are not currently well known in Colombia. The aim of this study was to evaluate the physical, chemical and nutritional parameters associated with the quality of Hass avocado in eight localities of the department of Antioquia based on descriptive statistics. Additionally, the quality was related to the localities through a multivariate analysis. As a result, quality at preharvest parameters of Hass avocados cultivated in Antioquia is similar or superior to that reported internationally based on physical and chemical variables. In addition, a relationship was established between the quality of fruits and the plots where these were cultivated, which allowed discriminating fruits by their region of origin. This work shows an approach to the determination of quality parameters in Hass avocado in Colombia and how they can be related to the characteristics of its productive system, which can lead to defining a product with added value.
DOI: 10.6084/m9.figshare.10296206.v1
title: Fruit quality in Hass avocado and its relationships with different growing areas under tropical zones

description: ABSTRACT Avocado is currently an important crop in Colombia, given its growth in planted area and the increase in exports. The destination market of Colombian avocado is mainly international, and its quality is outstanding. However, the physical and chemical characteristics associated with the quality of the avocados produced are not currently well known in Colombia. The aim of this study was to evaluate the physical, chemical and nutritional parameters associated with the quality of Hass avocado in eight localities of the department of Antioquia based on descriptive statistics. Additionally, the quality was related to the localities through a multivariate analysis. As a result, quality at preharvest parameters of Hass avocados cultivated in Antioquia is similar or superior to that reported internationally based on physical and chemical variables. In addition, a relationship was established between the quality of fruits and the plots where these were cultivated, which allowed discriminating fruits by their region of origin. This work shows an approach to the determination of quality parameters in Hass avocado in Colombia and how they can be related to the characteristics of its productive system, which can lead to defining a product with added value.
DOI: 10.6084/m9.figshare.10296467
title: Intercropping with Tropaeolum majus and fertilization with chicken manure on yield of Allophylus edulis

description: ABSTRACT Proper crop management is essential for preservation of medicinal plants of the Cerrado. There is no report of ex-situ cultivation of Allophylus edulis (vacum), which is used for its antimicrobial and antioxidant activities, in intercropping with Tropaeolum majus (nasturtium). Therefore, the aim of this study was to evaluate the effects of the intercropping with nasturtium and fertilization with chicken manure on yield of vacum. The experiment consisted of six treatments: monocrop vacum without chicken manure; monocrop vacum with hicken manure; monocrop nasturtium without chicken manure; monocrop nasturtium with chicken manure; vacum intercropped with nasturtium without chicken manure and vacum intercropped with nasturtium with chicken manure. The crop cycle of vacum took 540 days after transplanting and, during this period, nasturtium was cultivated in two cycles, in 2017 and 2018. Vacum showed greater height growth and production of fresh and dry masses of leaves in single cultivation with chicken manure fertilization. Nasturtium showed greater growth and flower production in monocrop cultivation with chicken manure fertiliazation, in the first cycle. The intercropping vacum with nasturtium was effective, showing Equivalent Area Ratio (EAR) of 1.16 and 1.18 without and with chicken manure, respectively.
DOI: 10.6084/m9.figshare.10296467.v1
title: Intercropping with Tropaeolum majus and fertilization with chicken manure on yield of Allophylus edulis

description: ABSTRACT Proper crop management is essential for preservation of medicinal plants of the Cerrado. There is no report of ex-situ cultivation of Allophylus edulis (vacum), which is used for its antimicrobial and antioxidant activities, in intercropping with Tropaeolum majus (nasturtium). Therefore, the aim of this study was to evaluate the effects of the intercropping with nasturtium and fertilization with chicken manure on yield of vacum. The experiment consisted of six treatments: monocrop vacum without chicken manure; monocrop vacum with hicken manure; monocrop nasturtium without chicken manure; monocrop nasturtium with chicken manure; vacum intercropped with nasturtium without chicken manure and vacum intercropped with nasturtium with chicken manure. The crop cycle of vacum took 540 days after transplanting and, during this period, nasturtium was cultivated in two cycles, in 2017 and 2018. Vacum showed greater height growth and production of fresh and dry masses of leaves in single cultivation with chicken manure fertilization. Nasturtium showed greater growth and flower production in monocrop cultivation with chicken manure fertiliazation, in the first cycle. The intercropping vacum with nasturtium was effective, showing Equivalent Area Ratio (EAR) of 1.16 and 1.18 without and with chicken manure, respectively.
DOI: 10.6084/m9.figshare.10295879
title: Antimicrobial and antibiofilm activity of Cymbopogon flexuosus essential oil microemulsions

description: ABSTRACT The objective of the study was to determine the antimicrobial activity antibiofilm and to identify the main components of the essential oil (EO) obtained from the leaves of Cymbopogon flexuosus. The antibacterial and antibiofilm activity was determined against Staphylococcus aureus ATCC 29213, Pseudomonas aeruginosa ATCC 27853, Salmonella Typhimurium ATCC 14028 and Listeria monocytogenes ATCC 19117. The effect of EO on biofilm was evaluated by quantifying viable cell number (CFU) and biomass by crystal violet (CV) analysis. The composition of the essential oils was determined by GC / FID and GC / MS. The results showed action against L. monocytogenes, S. aureus and S. Typhimurium with MIC and MBC values of 3.9 μL mL-1, thus showing satisfactory antimicrobial activity, given this was the lowest concentration tested. For the antibiofilm activity, a significant reduction (P &lt; 0.05) was observed for S. typhimurium and S. aureus. Biofilm biomass significantly reduced only for S. aureus and P. aeruginosa. EO presented the geranial and neral isomers as major components.
DOI: 10.6084/m9.figshare.10295879.v1
title: Antimicrobial and antibiofilm activity of Cymbopogon flexuosus essential oil microemulsions

description: ABSTRACT The objective of the study was to determine the antimicrobial activity antibiofilm and to identify the main components of the essential oil (EO) obtained from the leaves of Cymbopogon flexuosus. The antibacterial and antibiofilm activity was determined against Staphylococcus aureus ATCC 29213, Pseudomonas aeruginosa ATCC 27853, Salmonella Typhimurium ATCC 14028 and Listeria monocytogenes ATCC 19117. The effect of EO on biofilm was evaluated by quantifying viable cell number (CFU) and biomass by crystal violet (CV) analysis. The composition of the essential oils was determined by GC / FID and GC / MS. The results showed action against L. monocytogenes, S. aureus and S. Typhimurium with MIC and MBC values of 3.9 μL mL-1, thus showing satisfactory antimicrobial activity, given this was the lowest concentration tested. For the antibiofilm activity, a significant reduction (P &lt; 0.05) was observed for S. typhimurium and S. aureus. Biofilm biomass significantly reduced only for S. aureus and P. aeruginosa. EO presented the geranial and neral isomers as major components.
DOI: 10.34808/8vec-v342
title: Chromophobe cell renal carcinoma - Male, 36 - Tissue image [5300730025876381]

description: This is the histopathological image of KIDNEY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 36Clinical description: Tumor of left kidney.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Chromophobe cell renal carcinomaResult of the histopathological examination: Chromophobe cell renal cell carcinoma: CK7+, CD117+, VIM-.Sample:Material: FFPECollecting method: Surgical specimenTopography: URINARY TRACTOrgan: KIDNEYTissue: Kidney, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/asrg-5d27
title: Leiomyoma, NOS - Female, 56 - Tissue image [5300730025867991]

description: This is the histopathological image of SMALL INTESTINE tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 56Clinical description: CT: 40 x 50 mm tumor of small intestine.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: MYOMATOUS NEOPLASMSDiagnosis: Leiomyoma, NOSResult of the histopathological examination: Leiomyoma with bizarre nuclei: SMA+, DES+, CD117-, DOG1-, CKAE1/AE3-, CD34-, S100-, Ki-67 5%, Mitotic index: 2 mitoses/10 HPF.Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: SMALL INTESTINETissue: Small intestine, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/4wy2-v262
title: Merkel cell carcinoma, metastatic - Female, 74 - Tissue image [5300730025871731]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 74Clinical description: History of Merkel cell carcinoma. 4 cm tumor of right groin.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Merkel cell carcinoma, metastaticResult of the histopathological examination: Merkel cell carcinoma, metastatic: CK20+, SYN+, CHR focally +, TTF1-, LCA-, Ki-67 70%.Sample:Material: FFPECollecting method: Core-needle biopsyTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Inguinal lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: Ki-67Technology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/wy43-nz63
title: Mucinous carcinoma - Female, 58 - Tissue image [5300730025866911]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 58Clinical description: Hypoechoic tumor of right breast (diameter 18 mm) on ultrasound. Core needle biopsy: mucinous carcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: CYSTIC, MUCINOUS AND SEROUS NEOPLASMSDiagnosis: Mucinous carcinomaResult of the histopathological examination: Mucinous carcinoma of breast (type A): NHG2 (3+2+1: 0 mitoses/10HPF).Sample:Material: FFPECollecting method: Surgical specimenTopography: BREASTOrgan: BREASTTissue: Upper-outer quadrant of breastType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/4bxq-1772
title: Classical Hodgkin lymphoma, nodular sclerosis, NOS - Female, 25 - Tissue image [5300730025878921]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 25Clinical description: Enlarged cervical and supraclavicular lymph nodes on the left side. Suspicion of lymphoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: CHOROBA HODGKINADiagnosis: Classical Hodgkin lymphoma, nodular sclerosis, NOSResult of the histopathological examination: Hodgkin lymphoma, nodular sclerosis: lymph node with nodules separated by collagen bands. Numerous Hodgkin Reed-Sternberg (HRS). HRS cells: CD30+, CD15+, MUM1+, Pax5 (weak)+, CD3-, CD20-, Ki-67+, EBVLMP1-, ALK1-.Sample:Material: FFPECollecting method: Excision of lesionsTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Supraclavicular lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: CD 246 ALKTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/3tb6-zg29
title: Solitary fibrous tumor, NOS - Female, 61 - Tissue image [5300730025863681]

description: This is the histopathological image of OTHER AND ILL-DEFINED SITES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 61Clinical description: 4 x 3,5 x 3 cm tumor of neck on the left side. Suspicion of metastases.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: FIBROMATOUS NEOPLASMSDiagnosis: Solitary fibrous tumor, NOSResult of the histopathological examination: Solitary fibrous tumor: CD34+, STAT6+, SMA-, S100-, SYN-, CKAE1/AE3-, Ki-67 10%-.Sample:Material: FFPECollecting method: Excision of lesionsTopography: OTHER AND ILL-DEFINED SITESOrgan: OTHER AND ILL-DEFINED SITESTissue: Head, face or neck, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.10295888
title: Nutrient stock and nutritional efficiency of woody species in dry tropical forest as reforestation indicators

description: ABSTRACT Efficient forest species can be indicated for reforesting environments, which present nutritional restriction. The objective of this study was to determine the nutrient stock in leaf biomass of the species of greatest importance value (IV) in a tropical dry forest fragment, as well as to evaluate the nutritional efficiency of these species as reforestation indicators. A phytosociological study of the woody species was carried out defining the ten species with the greatest IV. Three individuals of each species were selected and sampled, with 25 leaves being collected from the middle part of the crown of each individual. The N, P, K, Ca and Mg contents were determined in these leaves and the leaf biomass was estimated by an allometric equation, calculating the stock of these nutrients and the nutritional efficiency of the species. The Schinopsis brasiliensis and Mimosa tenuiflora species can be recommended in environments with restricted P availability, and Spondias tuberosa can additionally be indicated to populate areas with low levels of K and Mg in the soil. Differences in the nutritional efficiency of the species can be attributed to the differences in the absorption and translocation capacity, as well as the utilization of these nutrients.
DOI: 10.6084/m9.figshare.10295888.v1
title: Nutrient stock and nutritional efficiency of woody species in dry tropical forest as reforestation indicators

description: ABSTRACT Efficient forest species can be indicated for reforesting environments, which present nutritional restriction. The objective of this study was to determine the nutrient stock in leaf biomass of the species of greatest importance value (IV) in a tropical dry forest fragment, as well as to evaluate the nutritional efficiency of these species as reforestation indicators. A phytosociological study of the woody species was carried out defining the ten species with the greatest IV. Three individuals of each species were selected and sampled, with 25 leaves being collected from the middle part of the crown of each individual. The N, P, K, Ca and Mg contents were determined in these leaves and the leaf biomass was estimated by an allometric equation, calculating the stock of these nutrients and the nutritional efficiency of the species. The Schinopsis brasiliensis and Mimosa tenuiflora species can be recommended in environments with restricted P availability, and Spondias tuberosa can additionally be indicated to populate areas with low levels of K and Mg in the soil. Differences in the nutritional efficiency of the species can be attributed to the differences in the absorption and translocation capacity, as well as the utilization of these nutrients.
DOI: 10.6084/m9.figshare.10295867
title: Phytotoxic potential of aqueous leaf extract of Tocoyena formosa and Rudgea viburnoides

description: ABSTRACT Plants have organic components produced as secondary metabolites able to positively or negatively interfere on normal development of other species. The objective of this research was to determine the phytotoxic effect of aqueous leaf extract from two species Rubiaceae family: Tocoyena formosa and Rudgea viburnoides on the germination and initial development of lettuce (Lactuca sativa L). The extract was obtained from mixing 50 g of fresh leaf and 500 mL of distilled water. The experiment was arranged in completely randomized design for each specie, subjected to five extract concentrations: 0, 25, 50, 75 and 100%; and 4 repetitions of 50 seed each. The bioassays were performed in laboratory at controlled temperature and luminosity during seven days. Results showed that the aqueous extract of both species do not affected the germination and the percent of abnormal lettuce seedlings. R. viburnoides showed no pronounced difference in relation to shoot length and dry biomass; however, the root length was reduced by 85%. The extract of T. formosa at higher concentrations, drastically reduce the dry biomass and length of shoots and roots. Therefore, both species have phytotoxic effect on seedling growth of lettuce being the length root the most affected variable.