cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5q65k/5
title: LIMMA Targets File

description: This text file contains information pertaining to each microarray (sex, population, temperature, tank, array number, array file name) used by LIMMA to Normalize the data for Matlab, or to provide supplemental results.
DOI: 10.5061/dryad.5q65k/6
title: Transcript ID

description: This file contains a key for matching "Custxxx" microarray probenames with their respective Ensembl transcript ID.
DOI: 10.5061/dryad.5q65k/7
title: Feature Extraction Output for Microarray Slide No. 3

description: This file contains the extracted data from all eight microarrays present on microarray slide number 3. For information on the output, see the Agilent Feature Extraction guide cited in text.
DOI: 10.5061/dryad.5q65k/8
title: Feature Extraction Output for Microarray Slide No. 6

description: This file contains the extracted data from the seven microarrays present on microarray slide number 6 that passed quality control. For information on the output, see the Agilent Feature Extraction guide cited in text.
DOI: 10.5061/dryad.8g73f/1
title: hif

description: All the sequences were amplified from cDNA and sequenced by ABI3730XL sequencer.
DOI: 10.5061/dryad.9r816/1
title: 4533611.3_M2_retainMode_16S

description: Partial 16S rRNA gene sequences from the complete Sphagnum magellanicum metagenome
DOI: 10.5061/dryad.9r816/4
title: 4516652.3_M2norm_L008_R1_paired_de_novo_assembly_Nmetabolism

description: Partial gene sequences encoding for nitrogen metabolism from the normalised Sphagnum magellanicum metagenome.
DOI: 10.5061/dryad.c4s8s/12
title: bin

description: Collection of bash and R scripts requested to execute the previous scripts.
DOI: 10.5061/dryad.c4s8s/13
title: README

description: Description of all files provided in this data package.
DOI: 10.5061/dryad.dj524/1
title: Detected_Species_Richness_for_each_Island

description: This file contains the species detected on each island and information about the island. A species was detected if a '1' appears for that species on that island. The species was not detected if a '0' appears for that species on that island.
DOI: 10.5061/dryad.dj524/2
title: Relative_Abunance_of_each_species_on_each_island

description: This file contains the relative abundance values for each species on each island. Values for each species represent the number of individuals counted per kilometers of transect. Metadata associated with each island are also included.
DOI: 10.5061/dryad.f375t/1
title: 2014-RBC form pic data

description: RBC form pic data
DOI: 10.5061/dryad.f375t/3
title: 2014-RBC morphology

description: containing the RBC morphology pic data after irradiation
DOI: 10.5061/dryad.jf29v/10
title: 08 - RandomForest results and gene family importance

description: R file contatining all the information concerning the RF analysis and the estimation of gene family importance in discriminating host races. Although this piece of information has been realease for transparency, beware that the R files contain many objects and is quite difficult to investigate. Please refer to the script "./08_GeneFamImptceTest/script.R" or contact the main authors for more information.
DOI: 10.5061/dryad.jf29v/4
title: 04 - Matrix of raw alpha values

description: Matrix of raw alpha values (i.e. CNV estimates) obtained from  the function "findOptimalSegmentations" (package "optimalCaptureSegmentation"). The values are not rounded here.
DOI: 10.5061/dryad.jf29v/5
title: 05 - Data for and results of GLMM1

description: R file containing the data frame and GLMM results of the first GLMM of the paper. Response variable: CNV presence/absence - a gene was considered to show CNV in a race if at least one of its subtargets presented a CN variant (i.e. CN≠1X) in at least one individual of this race.
DOI: 10.5061/dryad.jf29v/6
title: 06 - Data for and results of GLMM2

description: R file containing the data frame and GLMM results of the second GLMM of the paper. Response variable: complete duplication or deletion (CDD) vs partial duplication/deletion - a gene was considered CDD if all of its subtargets showed CN variants in at least one individual in the race.
DOI: 10.5061/dryad.jf29v/7
title: 07 - Data for and results of GLMM3

description: R file containing the data frame and GLMM results of the third GLMM of the paper. Response variable: CNV frequency - the proportion of individuals in a race with CN≠1X.
DOI: 10.5061/dryad.jf29v/8
title: 09 - NJ tree of CNV per capture pools and sequencing lanes

description: NJ tree  based on CNV data (data used: square rooted and polynomial transformed read counts, alpha rounded to the closest half unit). Capture pools and sequencing lanes are shown. The distance matrix was computed using usual Euclidean distance (by opposition to the distance matrix obtained from the Random Forest analysis).
DOI: 10.5061/dryad.jf29v/9
title: 10 - ExtendedFigure1_CNValongCHR_AllTargetsIncluded

description: Extended Figure 1.  CNV along chromosomes for all targeted loci. Each line represents an individual (one colour per race plus Medicago standard in purple). For clarity, values of alpha represented here are those before rounding to the closest half unit (the red box represents the area in which alpha values were rounded to one). Vertical light grey shaded areas represent targets as originally designed whereas bottom dark grey and gold boxes represent subtargets excluded and retained for final analyses, respectively. Retained subtargets are linked by full lines when from the same target and by dotted lines where not. Gene names (and scaffold numbers) are indicated above each plot. Control genes are shown with their alias names. The “P” in gene names stands for pseudogene. The “*” symbol indicates genes partially represented due to the absence of targets upstream or downstream filtered out during cleaning steps.
DOI: 10.5061/dryad.q6n0c/1
title: Infection counts and Infection status of hosts across age class

description: Data sheet Count: Count=number of infections; Lineage=Cyt b parasite lineage, PWHB=parasite weighted host breadth index; Host=Host species (Aves); Sample=total number of host sampled per species, Cat.type=4 levels: s= specialist parasite on their host, sp=spillover of specialist to non-target host, gs=generalist parasite on host with a specialist, gg=generalist host on host without specialist.  Data sheet: agehb Age=host age, 2 levels AHY=after hatch-year, HY=hatch year; Species=4 letter alpha code for host species.
DOI: 10.5061/dryad.rv746/1
title: readme
DOI: 10.5061/dryad.rv746/2
title: depression
DOI: 10.5061/dryad.rv746/3
title: fichiers
DOI: 10.5061/dryad.rv746/4
title: main
DOI: 10.5061/dryad.rv746/5
title: ranbin
DOI: 10.5061/dryad.rv746/6
title: recursion
DOI: 10.5061/dryad.rv746/7
title: SelRec
DOI: 10.5061/dryad.s0948/3
title: Microsatellites data in B. tabaci

description: Here are the data for the molecular weigth of ten microsatellites from B. tabaci. These data were assessed from eight populations: five from the Southwest and three in the Caribbean region in Colombia.
DOI: 10.7925/drs1.ucdlib_32138
title: 55 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1769.
description: Dublin City Council, Record of Protected Structures (2010), no. 8592
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32141
title: 56 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1911.
description: Dublin City Council, Record of Protected Structures (2010), no. 8593
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32144
title: 57 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Rendered facade structure, 4 levels above ground, constructed 1769.
description: Dublin City Council, Record of Protected Structures (2010), no. 8594
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32147
title: 58 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground, constructed 1771.
description: Dublin City Council, Record of Protected Structures (2010), no. 8595
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32150
title: 60 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Rendered facade structure, 3 levels above ground, constructed 1770.
description: Dublin City Council, Record of Protected Structures (2010), no. 8597
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32153
title: South William Street 60a

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Rendered facade structure, 3 levels above ground, constructed 1760.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32156
title: 61 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 3 levels above ground, constructed 1760.
description: Dublin City Council, Record of Protected Structures (2010), no. 8598
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.1nq6m/1
title: Crutsinger et al.

description: Excel format showing individual, community, and ecosystem  data from mesocosm experiment sorted by the identity of the Populus trichocarpa genotype.
DOI: 10.5061/dryad.1nq6m/2
title: Structural Equation Model R script
DOI: 10.5061/dryad.1nq6m/3
title: Structural Equation Model data file
DOI: 10.5061/dryad.34vq1/1
title: Bayesian phylogeny of CBM_48—Alpha-amylase containing branching and debranching enzymes

description: Data file for Figure 4.
DOI: 10.5061/dryad.34vq1/2
title: Bayesian phylogeny of GDE_C domain containing (putative) debranching enzymes (EC 3.2.1.33).

description: Data file for Figure 5.
DOI: 10.5061/dryad.34vq1/3
title: Minimal evolution phylogeny of CBM_48 containing proteins

description: Alignment: hmmalign; pairwise distances: Tree-Puzzle; tree inference: FastME
DOI: 10.5061/dryad.3rq51/6
title: All_calisNuc_7Part

description: Tree file from beast analysis of the pruned nDNA dataset
DOI: 10.5061/dryad.3rq51/7
title: xmlDornburg_allnuc

description: xml file used to generate divergence times using all nDNA data
DOI: 10.5061/dryad.3rq51/8
title: xmlDornburg_pruned_nDNA

description: xml file used to generate divergence times using pruned nDNA data
DOI: 10.5061/dryad.4h56c/1
title: ABySS_transcriptome_denovo_assembly

description: ABySS denovo assembly of RNAseq data from pooled adults, larvae, and eggs of Cerapachys biroi, as described in the "The genome of the clonal raider ant Cerapachys biroi", Current Biology 2014
DOI: 10.5061/dryad.4h56c/2
title: CSPs.bali-phy_consensus

description: Consensus of bali-phy runs for ant CSPs
DOI: 10.5061/dryad.4h56c/3
title: CSPs.bali-phy_trees_run1.trees

description: Trees from bali-phy chain 1 for ant CSPs
DOI: 10.5061/dryad.5j754/1
title: Saimaa_ringed_seal_microsat

description: Saimaa ringed seal genotypes based on 17 microsatellite loci. Individuals sampled between the years 1980-2008 from five regions of Lake Saimaa; Northern Saimaa (1st pop), Kolovesi (2nd pop), Main Haukivesi area (3rd pop), Pihlajavesi area (4th pop) and Southern Saimaa (5th pop). The data is in GenePop format.
DOI: 10.5061/dryad.5j754/2
title: Saimaa_ringed_seal_sample_info

description: Collection information on the individual Saimaa ringed seals included in the study.
DOI: 10.5061/dryad.5q65k/10
title: Feature Extraction Output for Microarray Slide No. 8

description: This file contains the extracted data from all four microarrays present on microarray slide number 8. For information on the output, see the Agilent Feature Extraction guide cited in text.
DOI: 10.5061/dryad.5q65k/11
title: Feature Extraction Output for Microarray Slide No. 9

description: This file contains the extracted data from all seven microarrays present on microarray slide number 9 that passed quality control. For information on the output, see the Agilent Feature Extraction guide cited in text.
DOI: 10.5061/dryad.5q65k/12
title: Feature Extraction Output for Microarray Slide No. 10

description: This file contains the extracted data from all eight microarrays present on microarray slide number 10. For information on the output, see the Agilent Feature Extraction guide cited in text.
DOI: 10.5061/dryad.5q65k/13
title: Summary of Significantly Enriched Gene Classes

description: This file contains the full list of enriched gene classes, and the members of each gene class. There are five worksheets: enriched gene classes in marine stickleback at 22 degrees C, enriched gene classes in marine stickleback at 7 degrees C, enriched gene classes in freshwater stickleback at 22 degrees C, enriched gene classes in freshwater stickleback at 7 degrees C, and a key that identifies probe number with Ensembl transcript ID.
DOI: 10.5061/dryad.5q65k/14
title: Hierarchical GO Graph, Marine 22 deg C, Biological Processes

description: Significantly enriched gene classes shown in hierarchical graph, for biological processes.
DOI: 10.5061/dryad.5q65k/15
title: Hierarchical GO Graph, Marine 22 deg C, Molecular Processes

description: Significantly enriched gene classes shown in hierarchical graph, for molecular processes.
DOI: 10.5061/dryad.5q65k/16
title: Hierarchical GO Graph, Marine 22 deg C, Cellular Processes

description: Significantly enriched gene classes shown in hierarchical graph, for cellular processes.
DOI: 10.5061/dryad.5q65k/17
title: Hierarchical GO Graph, Marine 7 deg C, Molecular Processes

description: Significantly enriched gene classes shown in hierarchical graph, for molecular processes.
DOI: 10.5061/dryad.5q65k/9
title: Feature Extraction Output for Microarray Slide No. 7

description: This file contains the extracted data from all eight microarrays present on microarray slide number 7. For information on the output, see the Agilent Feature Extraction guide cited in text.
DOI: 10.5061/dryad.9r816/2
title: 4533611.3_M2_retianMode_Nmetabolism

description: Partial gene sequences encoding for nitrogen metabolism from the complete Sphagnum magellanicum metagenome.
DOI: 10.5061/dryad.bb1rt/1
title: Wintonotitan wattsi in Mannion et al 2013 LSDM Poropat et al 2014.tnt
DOI: 10.5061/dryad.bb1rt/2
title: Wintonotitan wattsi in Carballido & Sander 2014 Poropat et al 2014.tnt
DOI: 10.5061/dryad.f375t/2
title: 2014-RBC size changes data

description: RBC size changes data including in the physical parameters of the irradiation, such as Length, Width,Perimeter,ROI area and Volume.
DOI: 10.5061/dryad.f375t/4
title: 2014-BM myelogram data

description: BM analysis data and myelogram pic
DOI: 10.5061/dryad.f375t/5
title: 2014-schematic diagram

description: A schematic diagram of damage pattern after irradition
DOI: 10.5061/dryad.f375t/6
title: 2014-Tip calibration

description: Tip calibration pic data
DOI: 10.5061/dryad.f375t/7
title: 2014-Spectrin protein-WB analysis

description: Spectrin protein-WB analysis data
DOI: 10.5061/dryad.f375t/8
title: 2014-AFM topography

description: AFM topography analysis data
DOI: 10.5061/dryad.f375t/9
title: 2014--AFM measurment data

description: AFM measurment data contain Youngs modulus data groups,c ions histogram-occurrence data,x rays histogram- occurrence data,P correlation analysis data,Elasticity modulus-Scatter dots and Youngs modulus- dose-time relationship after irradiation.
DOI: 10.5061/dryad.f6s22/1
title: Perl script for functional annotations

description: Hit-desc.pl - Perl script for adding functional annotations to contigs using BLAST output (-outfmt 6). Note: This script uses regular expressions that are specific to targeting the accession numbers of our contigs and those that were used for BLAST searches. It is to be used as a reference for writing similar scripts for similar purposes but will not work as is for datasets other than our own. Requires an installation of BioPerl. Running too much BLAST output at once will kick you off of the NCBI server, so restrict the number of queries to ~500.
DOI: 10.5061/dryad.k8vr8.1
title: Data from: Multilocus patterns of genetic variation across Cryptosporidium species suggest balancing selection at the gp60 locus
DOI: 10.5061/dryad.k8vr8.2
title: Data from: Multilocus patterns of genetic variation across Cryptosporidium species suggest balancing selection at the gp60 locus
DOI: 10.5061/dryad.k8vr8.2/1.1
title: ACoAs Cryptosporidium alignment
DOI: 10.5061/dryad.k8vr8.2/2.1
title: COWP1 Cryptosporidium alignment
DOI: 10.5061/dryad.k8vr8.2/3.1
title: dyn4 Cryptosporidium alignment
DOI: 10.5061/dryad.kt24p/1
title: BryconidaeNexus

description: Sequences of all Characiformes analyzed
DOI: 10.5061/dryad.kt24p/2
title: BryconidaePaup

description: Contain data of Bryconidae, Gasteropelecidae and Triportheidae
DOI: 10.5061/dryad.m3263/1
title: Data

description: Data for analyses undertaken in the manuscript 'Interspecific signalling between mutualists: food-thieving drongos use a cooperative sentinel call to manipulate foraging partners'
DOI: 10.5061/dryad.n76td/1
title: Table S4A-B

description: Survival data of offspring
DOI: 10.5061/dryad.pb787/1
title: Emberizoid Pseudoposterior Trees

description: A zipped folder containing emberizoid pseudoposterior and maximum clade credibility trees.
DOI: 10.5061/dryad.pb787/2
title: Emberizoid R Workspace

description: This is an R workspace containing backbone and subclade trees and code for generation of pseudoposterior trees.
DOI: 10.5061/dryad.pb787/3
title: R Code for Pseudoposterior Generation

description: Contains functions and example code for generation of emberizoid pseudoposterior trees.
DOI: 10.5061/dryad.v6n86/1
title: Data from: Mating portfolios: bet-hedging, sexual selection and female multiple mating

description: Raw data for fertilization rates and embryo survival in the two experiments that were carried out. Excel file. Column names are self-explanatory (see Material and Methods in the article for further details).
DOI: 10.7925/drs1.ucdlib_32159
title: 62 William Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1760.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32162
title: 63 William Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1760.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.