cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh3283231.08fu
title: SH3283231.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3283232.08fu
title: SH3283232.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3283233.08fu
title: SH3283233.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3283234.08fu
title: SH3283234.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3283235.08fu
title: SH3283235.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3283236.08fu
title: SH3283236.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3283237.08fu
title: SH3283237.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3283238.08fu
title: SH3283238.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5061/dryad.83gt9/2
title: Liana_data_liana_removal_experiment

description: Liana information from the Liana Removal Experiment in Panama. For each liana &gt;= 5 cm is indicated in which control plot the liana was located and the diameter (DBH) and above-ground biomass (AGB) at each annual census.
DOI: 10.5061/dryad.83gt9/3
title: Litterfall_data_liana_removal_experiment

description: Litterfall information for the Liana Removal Experiment in Panama. For each plot, the litterfall for each year is provided (2011-2012, 2012-2013, 2013-2014) and split in the following litterfall categories (leaves, flowers, fruits and seeds, twigs and other). The total litterfall and the total litterfall excluding twigs is also provided.
DOI: 10.5061/dryad.842r3/1
title: PA_animal_data_Bichet_et_al_2015

description: Raw presence/absence data for birds, ants, ground beetles, flying beetles and small mammals sampled in Eastern-Canada boreal forest, together with habitat variables identified from digital eco-forest maps.
DOI: 10.5061/dryad.842r3/2
title: Species_occurrence_probability_Bichet_et_al_2015

description: Mean species occurrence probability in each management scenario, calculated as the sum of species-specific occurrence probability in each pixel divided by the number of pixels in each simulated landscape.
DOI: 10.5061/dryad.88354/1
title: Patterns and Limitations of Urban Human Mobility Resilience under the Influence of Multiple Types of Natural Disaster (Original Data)

description: The file includes the location data from 15 natural disaster events that are used for this research.
DOI: 10.5061/dryad.8kt5d/1
title: hybrid fasta

description: fasta file simulations hybrid model
DOI: 10.5061/dryad.8kt5d/2
title: 3 species fasta

description: fasta file simulation 3 species model
DOI: 10.5061/dryad.br45b/1
title: Suplementary information

description: Files as described in main text in the publication
DOI: 10.5061/dryad.c06n3/6
title: formatData.R

description: A helper R script that contains all of the data manipulation necessary to convert the raw data in mergedUTM.tsv into distance matricies for each population, and ultimately the long-form data frame of sex ratios at different spatial scales for all plant used in the scaleAnalysis.R script.
DOI: 10.5061/dryad.c2378/1
title: Random Forest Model (R Data)

description: RF_BOTH.RData is the Random Forest model that was generated for predicting VIWTP habitat suitability.
DOI: 10.5061/dryad.c2378/2
title: Presence-absence dataset for VIWTP

description: presabs_both_IndYears_allvars_final.csv is the final presence-absence dataset for Vancouver Island White-tailed Ptarmigan used in the model. It contains pseudo-absences that were generated using the methods described in the manuscript. It contains topographic and biogeoclimatic zone data from as described in the manuscript and climate variables that were obtained from ClimateBC version 5.03 (http://cfcg.forestry.ubc.ca/projects/climate-data/climatebcwna/#ClimateBC). Description and data format for each variable (column header) is described in the same order as they appear in the presabs_both_IndYears_allvars_final.csv file. (Also see Table 1 in the manuscript for variable descriptions.) [1] FNETID. Unique ID for each observation. [2] pres. Whether the observation is a presence (1) or a pseudo-absence (0). [3] Year. The year the observation was collected. For pseudo-absences, years were assigned randomly based on the prevalence of years in the presence dataset. [4] datatype. Dataset from which the observation originated. PUB = public observation, FS = field survey, NA = pseudo-absence. [5] BCAlbX. BC Environment Albers X coordinate. [6] BCAlbY. BC Environment Albers Y coordinate. [7] BEC. Biogeoclimatic Zone. MH = Mountain Hemlock, AT = Alpine Tundra, CWH = Coastal Western Hemlock. [8] Elevation. Elevation in meters. [9] Aspect. Aspect reclassified according to solar incidence. We transformed aspect as x = -1*cos[Ø(π/180)], where Ø  is the aspect measured in degrees. Values ranged from -1 where the angle of solar incidence was lower (north-facing slopes) to 1 where it was higher (south-facing slopes). The importance of aspect depends on slope, so we assigned aspects with slopes of &lt;5° a neutral value of 0. [10] Slope. Slope in degrees. [11] CTI. Compound Topographic Index, a function of the slope and the upstream contributing area. [12] Rugg9. Vector Ruggedness Measure, a measurement of terrain ruggedness as the variation in three-dimensional orientation of grid cells within a 9-cell neighborhood. [13] Tave_sm. Summer mean temperature (degrees C). [14] MSP. Mean annual summer (May – Sept.) precipitation (mm).[15] PAS. Precipitation as snow from August in previous year to July of current year (mm).
DOI: 10.5061/dryad.c2378/8
title: Predictor variables for all of Vancouver Island (current climate)

description: allVI_fewvars_1980_2010.csv.zip is a compressed grid created for Vancouver Island at 100-m resolution with topographic variables and climate variables downloaded from ClimateBC version 5.03 (http://cfcg.forestry.ubc.ca/projects/climate-data/climatebcwna/#ClimateBC). This file was used to project the Random Forest model for VIWTP habitat suitability across the entire study area of Vancouver Island. The variables are the same as those described for the presabs_both_IndYears_allvars_final.csv file.
DOI: 10.5061/dryad.c2378/9
title: Future climate variables for all Vancouver Island

description: allVI_futureclimates.zip is a compressed file including future climate variables (mean summer precipitation, precipitation as snow, and average summer temperature) covering all of Vancouver Island at 100-m resolution (the same resolution as the topographic variables in Rasters.zip). Each file represents future climate variables for one of three general circulation models (Can, CCSM, or GFDL), one of two IPCC emissions scenarios from the AR5 report (RCP 4.5 or RCP 8.5) and one of three future time periods (2020's, 2050's, or 2080's).
DOI: 10.5061/dryad.f4mc7/1
title: Dolson et al 2009 unpublished data

description: Previously unpublished lake shape, Lake Trout weight and Lake Trout catch per unit effort (CPUE) data gathered as part of a study described in Dolson et al. 2009 (see citation for all sampling and study lake information). Full citation: Dolson, R., K. McCann, N. Rooney, and M. Ridgway. 2009. Lake morphometry predicts the degree of habitat coupling by a mobile predator. Oikos 118:1230-1238.
DOI: 10.5061/dryad.h26v5/1
title: Basic data

description: This zip files contains six directories, each one includes basic data used for analyses. The "alignments" directory includes concatenated, phased, and unphased gene alignments. The "trees" directory includes MCC tree files in nexus format, produced by BEAST and starBEAST. Trees include individual gene trees, concatenated, and species trees. The "bpp" folder includes the control, tree, and imap files needed to run BP&P. The "maxent_input" folder has the filtered input coordinates used to run maxent in R. The "asr_div_data" has the geographic states used in RASP and data for MuSSE in a RData file. Finally, the "popsize_data" includes a table with summarized information about extant and ancestral population sizes and latitudes.
DOI: 10.5061/dryad.j2dj4/1
title: HeART_Rinput_allcommonSNPsQZ

description: Data for study in txt format
DOI: 10.5061/dryad.j5r51/37
title: Simulated laminar recordings from reconstructed morphologies for input intensity 2.5 sp/ms

description: Simulated recordings (10101 ms) of the LFP generated by the 3D network with reconstructed (rather than artificial) morphologies described in the paper, computed from LFPy. Each row is a different depth. Input intensity is reported in the title.
DOI: 10.5061/dryad.j5r51/38
title: Simulated laminar recordings from reconstructed morphologies for input intensity 3.0 sp/ms

description: Simulated recordings (10101 ms) of the LFP generated by the 3D network with reconstructed (rather than artificial) morphologies described in the paper, computed from LFPy. Each row is a different depth. Input intensity is reported in the title.
DOI: 10.5061/dryad.j5r51/39
title: Simulated laminar recordings from reconstructed morphologies for input intensity 6.0 sp/ms

description: Simulated recordings (10101 ms) of the LFP generated by the 3D network with reconstructed (rather than artificial) morphologies described in the paper, computed from LFPy. Each row is a different depth. Input intensity is reported in the title.
DOI: 10.5061/dryad.j95t2/1
title: ColourDataTable

description: The data set includes the colour scorings for all observations from both rounds included in all analyses.
DOI: 10.5061/dryad.kg66r/2
title: Rijal_et_al_Data_files

description: File contains microsatellite genotype data for Heracleum persicum and various input files for structure, Approximate Bayesian Computation, Isolation with migration and basic genetic diversity analyses.
DOI: 10.5061/dryad.n5j23/1
title: Magnesium intake and hyperuricemia; raw data.

description: The raw data of the cross-sectional study-Association between Dietary Magnesium Intake and Hyperuricemia.
DOI: 10.5061/dryad.pb1sb/1
title: Appendix S1 - Specimens direct analyzed and used for the construction of morphometric characters

description: List of specimens direct analyzed and used for the construction of morphometric characters
DOI: 10.5061/dryad.pb1sb/2
title: Appendix S2-Character list

description: List of characters used in the cladistic analysis
DOI: 10.5061/dryad.rd247/1
title: 3D reconstruction of Tomteluva perturbata
DOI: 10.5061/dryad.s168r/1
title: Substrate

description: Contains three excel sheet tabs: "indvar_substrate_select", "indvar_riffle_character", "substrate_profile". First, "indvar_substrate_select" corresponds to the evaluation of individual sampler bias in substrate selection at a point along a transect. Second, "indvar_riffle_character" corresponds to the evaluation of individual variation in Wolman pebble counts of a riffle. Third, "substrate_profile" refers to the Wolman pebble counts downstream of each dam.
DOI: 10.5061/dryad.s168r/2
title: Wetted width and depth

description: Includes all field measurements of wetted width and depth.
DOI: 10.5061/dryad.sg7k2/1
title: 1- data sheet learning performance biology letters

description: this file includes the data used in our learning performance tests
DOI: 10.5061/dryad.sg7k2/2
title: 2-other experiments

description: This is a 3-sheet excel file containing the data of the other three experiments included in the study: 1) the egg-laying test under different sexual harassment conditions; 2) the experiment testing how many female flies were on the correct oviposition medium during the sexual harassment assay; 3) the occurrence of sexual harassment during the assay
DOI: 10.5061/dryad.sp72p/1
title: ELE_DAM_09-14_DRYAD

description: Overstorey tree survival (&gt;1.5m tall), fire (0/1) and elephant damage (0-10) over time.
DOI: 10.5061/dryad.td887/3
title: Phenotype raw data

description: raw data for ovarian activation, juvenile hormone levels, lipid and glycogen content, queen weight and gene expression data (fold change) for 11 genes that were tested in the study
DOI: 10.5061/dryad.ts3t7/1
title: Hey_etal_MolEcol_dryad
DOI: 10.5061/dryad.0b43t/1
title: Atriplex ITS sequences

description: Aligned Atriplex ITS sequences in nexus format with indels removed or treated as missing data. The datafile includes 33 of the 58 native Australian species. Three representatives of the genus Halimione are included as outgroups.
DOI: 10.5061/dryad.0b43t/2
title: Australian Camphorosmeae ITS sequences

description: Alignment of the Australian Camphorosemeae ITS sequences in nexus format. Indels have been removed or treated as missing data. The datafile contains 33 of the 145 native Australian species along with three outgroups; Kochia melanoptera, Kochia krylovii and Bassia dasyphylla.
DOI: 10.5061/dryad.0b43t/3
title: Mitochondrial ND2 sequences for the Amytornis textilis-modestus complex

description: Alignment of 74 ND2 sequences for the Amytornis textilis-modestus species complex. Sequences are coded by their GenBank accessions as described by Austin et al (2013). The datafile also includes four outgroup sequences; Amytornis purnelli, A. ballarae, A. housei and A. goyderi.
DOI: 10.5061/dryad.0p7vm/1
title: Minimal dataset

description: The attached file contains the minimal dataset for the above mentioned study, including the data from the (1) preliminary studies (hemolysis and flow measurements), (2) combined laser Doppler flowmetry and remission spectroscopy (O2C), (3) rate of necrosis and (4) blood gas analysis. All files are Microsoft excel sheets. A legend explaining all abbreviations used in the data sheets is attached to each file as a tab.
DOI: 10.5061/dryad.110s9/1
title: Dataset S1 (source)

description: Source site and USDA GRIN accession information for all populations used in this study.
DOI: 10.5061/dryad.110s9/2
title: Dataset S2 (data)

description: Plant trait data and source site environmental data for all populations included in this study.
DOI: 10.5061/dryad.13t18/12
title: Gene tree set 7

description: 29 taxa 30% missing taxa dataset analyzed in NJst.
DOI: 10.5061/dryad.13t18/13
title: Gene tree set 8

description: 29 taxa 40% missing taxa dataset analyzed in NJst.
DOI: 10.5061/dryad.13t18/14
title: Gene tree set 9

description: 29 taxa 50% missing taxa dataset analyzed in NJst and ASTRAL.
DOI: 10.5061/dryad.13t18/15
title: Gene tree set 10

description: 29 taxa 60% missing taxa dataset analyzed in NJst.
DOI: 10.5061/dryad.13t18/16
title: Gene tree set 11

description: 44 taxa 20% missing taxa dataset analyzed in NJst.
DOI: 10.5061/dryad.13t18/17
title: Gene tree set 12

description: 44 taxa 30% missing taxa dataset analyzed in NJst.
DOI: 10.5061/dryad.13t18/18
title: Gene tree set 13

description: 44 taxa 40% missing taxa dataset analyzed in NJst.
DOI: 10.5061/dryad.13t18/19
title: Gene tree set 14

description: 44 taxa 50% missing taxa dataset analyzed in NJst and ASTRAL.
DOI: 10.5061/dryad.13t18/20
title: Gene tree set 15

description: 44 taxa 60% missing taxa dataset analyzed in NJst.
DOI: 10.5061/dryad.1538f/1
title: SNPs for full set of non-redundant sequences

description: This file contains SNPs for the 41 isolates of taxa PS4A, PS4B and PS6. Initially the dataset was comprised of 52 isolates, but after genome sequencing a "clone correction" was carried out, i.e. only one representative of groups of genome with genetic distance below 0.1 were kept in the dataset. The file used for clone correction has also been deposited on Dryad.
DOI: 10.5061/dryad.1538f/2
title: SNPs for non-redundant European and North-American sequences

description: This file contains SNPs for the European and North American isolates of PS4B. SNP-calling was performed independently for this set of sequences, for the full set of sequences and for the full set of non redundant sequences.