cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9782504.v1
title: Additional file 1: of Deciphering DNA methylation signatures of pancreatic cancer and pancreatitis

description: Table S1. List of genes presenting differential DNA methylation between healthy pancreas, chronic pancreatitis or pancreatic cancer. CP: chronic pancreatitis; HiR: high PT-risk; IPMN: papillary mucinous neoplasms; PIN: pancreatic intraepithelial neoplasias; PT: pancreatic adenocarcinoma; PTX: pancreatic adenocarcinoma xenografts. Hyper:DNA hypermethylation; hypo: DNA hypomethylation; –: no change; inv.: invasive; *: non-significant; #: cohort size &lt;10; §: p16INK4a specific region; $: p14ARF specific region; £: associated with longer survival. Grey background: genes analysed in both primary and liquid biopsies (XLS 57 kb)
DOI: 10.6084/m9.figshare.9782492.v1
title: Actin filaments in mouse kidney sections

description: 3D-pSIM images of Actin filaments in mouse kidney sections<br>Raw microscope image from conventional microscope GE DeltaVision OMX SR, SIM reconstruction result via the associated software SoftWoRx and the corresponding pSIM images.<br>Metadata file of the raw images are accompanied.<br>Pixel size: 80nm in raw data and 40 nm in high-resolution reconstructed data
DOI: 10.6084/m9.figshare.9782498.v1
title: Additional file 1: of Most of anti-glycolipid IgG-antibodies associated to neurological disorders occur without their IgM counterpart

description: Contingency tables for statistical analysis of the different comparisons. Tables were exported from the analyses performed in Graph Pad Prism 6. (XLS 59 kb)
DOI: 10.6084/m9.figshare.9782462
title: Interactions between a tiny aquatic plant (duckweed, Lemna minor) and it's microbiome, altered tolerance of, and changes in response to, concordant urban chemical inputs to freshwater (salt, benzotriazole)

description: Datafiles associated with “Resilience to multiple stressors in an aquatic plant and its microbiome” by Anna O'Brien, Zhu Hao Yu, Dian-ya Luo, Jason Laurich, Elodie Passeport, and Megan Frederickson, American Journal of Botany, 2019. Please see README.txt and/or GitHub repository for use and contents information for each file.<br>https://github.com/amob/OBrien-et-al-2019-AmJBot<br>
DOI: 10.6084/m9.figshare.9782462.v1
title: Interactions between a tiny aquatic plant (duckweed, Lemna minor) and it's microbiome, altered tolerance of, and changes in response to, concordant urban chemical inputs to freshwater (salt, benzotriazole)

description: Datafiles associated with “Resilience to multiple stressors in an aquatic plant and its microbiome” by Anna O'Brien, Zhu Hao Yu, Dian-ya Luo, Jason Laurich, Elodie Passeport, and Megan Frederickson, American Journal of Botany, 2019. Please see README.txt and/or GitHub repository for use and contents information for each file.<br>https://github.com/amob/OBrien-et-al-2019-AmJBot<br>
DOI: 10.6084/m9.figshare.9782474
title: Untitled Item

description: Fusion algorithm data and monocular vision algorithm data
DOI: 10.6084/m9.figshare.9782453
title: Cloud-filling R code and data

description: Data and code accompanying a manuscript comparing cloud-filling algorithms for marine satellite data. The manuscript is in preparation or in review, and the code and data are primarily provided for peer review purposes. A full description will be provided once the manuscript is accepted.<br>
DOI: 10.6084/m9.figshare.9782474.v1
title: Untitled Item

description: Fusion algorithm data and monocular vision algorithm data
DOI: 10.6084/m9.figshare.9782405
title: 112816JF799F-full.fasta.gz

description: Sequence data - accompanying github repo here: https://github.com/nitschkematthew/Symbiodinium-bacteria-interactions<br>Microbially induced calcification plays an important role in biogeochemical cycles and produces different types of microbialites. Symbiolites are photosynthesis-induced microbialites, formed by co-cultures of dinoflagellates from the family Symbiodiniaceae and bacteria. Symbiolites encase the calcifying community as endolithic cells, pointing at an autoendolithic niche of symbiotic dinoflagellates, and provide a rare opportunity to study the role of bacteria in bacterial-algal calcification, as symbiodiniacean cultures display distinct symbiolite-producing or non-symbiolite-producing phenotypes. Using Illumina-sequencing, we characterised the bacterial communities of symbiolite-producing and non-symbiolite-producing cultures. We anticipate that symbiolite formation, as a low-complexity calcifying in vitro model, will significantly advance our understanding of bacteria in photosynthesis-induced calcification.
DOI: 10.6084/m9.figshare.9782414
title: Genome assembly of Mariana hadal snailfish

description: The genome assembly of Mariana hadal snailfish.The data of "https://www.nature.com/articles/s41559-019-0864-8"Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation<br>
DOI: 10.6084/m9.figshare.9782402
title: 112816JF799F-full.qual.gz

description: Sequence quality data - accompanying github repo here: https://github.com/nitschkematthew/Symbiodinium-bacteria-interactions<br>Microbially induced calcification plays an important role in biogeochemical cycles and produces different types of microbialites. Symbiolites are photosynthesis-induced microbialites, formed by co-cultures of dinoflagellates from the family Symbiodiniaceae and bacteria. Symbiolites encase the calcifying community as endolithic cells, pointing at an autoendolithic niche of symbiotic dinoflagellates, and provide a rare opportunity to study the role of bacteria in bacterial-algal calcification, as symbiodiniacean cultures display distinct symbiolite-producing or non-symbiolite-producing phenotypes. Using Illumina-sequencing, we characterised the bacterial communities of symbiolite-producing and non-symbiolite-producing cultures. We anticipate that symbiolite formation, as a low-complexity calcifying in vitro model, will significantly advance our understanding of bacteria in photosynthesis-induced calcification.
DOI: 10.6084/m9.figshare.9782414.v1
title: Genome assembly of Mariana hadal snailfish

description: The genome assembly of Mariana hadal snailfish.The data of "https://www.nature.com/articles/s41559-019-0864-8"Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation<br>
DOI: 10.6084/m9.figshare.9782402.v1
title: 112816JF799F-full.qual.gz

description: Sequence quality data - accompanying github repo here: https://github.com/nitschkematthew/Symbiodinium-bacteria-interactions<br>Microbially induced calcification plays an important role in biogeochemical cycles and produces different types of microbialites. Symbiolites are photosynthesis-induced microbialites, formed by co-cultures of dinoflagellates from the family Symbiodiniaceae and bacteria. Symbiolites encase the calcifying community as endolithic cells, pointing at an autoendolithic niche of symbiotic dinoflagellates, and provide a rare opportunity to study the role of bacteria in bacterial-algal calcification, as symbiodiniacean cultures display distinct symbiolite-producing or non-symbiolite-producing phenotypes. Using Illumina-sequencing, we characterised the bacterial communities of symbiolite-producing and non-symbiolite-producing cultures. We anticipate that symbiolite formation, as a low-complexity calcifying in vitro model, will significantly advance our understanding of bacteria in photosynthesis-induced calcification.
DOI: 10.6084/m9.figshare.9782399
title: 112816JF799F-mapping2.txt

description: Mapping file - see accompanying github repo: https://github.com/nitschkematthew/Symbiodinium-bacteria-interactions<br>Microbially induced calcification plays an important role in biogeochemical cycles and produces different types of microbialites. Symbiolites are photosynthesis-induced microbialites, formed by co-cultures of dinoflagellates from the family Symbiodiniaceae and bacteria. Symbiolites encase the calcifying community as endolithic cells, pointing at an autoendolithic niche of symbiotic dinoflagellates, and provide a rare opportunity to study the role of bacteria in bacterial-algal calcification, as symbiodiniacean cultures display distinct symbiolite-producing or non-symbiolite-producing phenotypes. Using Illumina-sequencing, we characterised the bacterial communities of symbiolite-producing and non-symbiolite-producing cultures. We anticipate that symbiolite formation, as a low-complexity calcifying in vitro model, will significantly advance our understanding of bacteria in photosynthesis-induced calcification.
DOI: 10.6084/m9.figshare.9782399.v1
title: 112816JF799F-mapping2.txt

description: Mapping file - see accompanying github repo: https://github.com/nitschkematthew/Symbiodinium-bacteria-interactions<br>Microbially induced calcification plays an important role in biogeochemical cycles and produces different types of microbialites. Symbiolites are photosynthesis-induced microbialites, formed by co-cultures of dinoflagellates from the family Symbiodiniaceae and bacteria. Symbiolites encase the calcifying community as endolithic cells, pointing at an autoendolithic niche of symbiotic dinoflagellates, and provide a rare opportunity to study the role of bacteria in bacterial-algal calcification, as symbiodiniacean cultures display distinct symbiolite-producing or non-symbiolite-producing phenotypes. Using Illumina-sequencing, we characterised the bacterial communities of symbiolite-producing and non-symbiolite-producing cultures. We anticipate that symbiolite formation, as a low-complexity calcifying in vitro model, will significantly advance our understanding of bacteria in photosynthesis-induced calcification.
DOI: 10.6084/m9.figshare.9782351
title: Actin filaments in mouse hippocampal neurons

description: pSIM image of actin filaments in mouse hippocampal neurons<br>Raw microscope image from conventional microscope GE DeltaVision OMX SR, SIM reconstruction result via the associated software SoftWoRx and the corresponding pSIM images.<br>Metadata file of the raw images are accompanied.<br>Pixel size: 80nm in raw data and 40 nm in high-resolution reconstructed data<br>Gamma is set to 0.5 for the visualization due to the unequal level of the intensity between the axon and dendrite
DOI: 10.6084/m9.figshare.9782342
title: Live-cell imaging of the microtubules in U2OS cells

description: Live-cell imaging of the microtubules in U2OS cells<br>Raw microscope image from conventional microscope GE DeltaVision OMX SR, SIM reconstruction result via the associated software SoftWoRx and the corresponding pSIM images.<br>Metadata file of the raw images are accompanied.<br>Pixel size: 80nm in raw data and 40 nm in high-resolution reconstructed data
DOI: 10.6084/m9.figshare.9782297
title: An extreme sea level indicator for the contiguous United States coastline

description: Database includes time series of storm surge climatology (SSC) and mean sea level (MSL) indicators. SSC indicators for different regions as well as time series of combined 4.4 and 18.6 year tidal cycles are provided for summer and winter half years separately; MSL indicators and combined contributions of vertical land motion (VLM) and global mean sea level rise (GMSL) are provided at annual resolution. Estimates of location, scale and shape parameters of generalized extreme value distribution for summer and winter half years in different regions along the US coast are provided. Two animation files present the changes of aggregated sea level over time are also included.
DOI: 10.6084/m9.figshare.9782297.v1
title: An extreme sea level indicator for the contiguous United States coastline

description: Database includes time series of storm surge climatology (SSC) and mean sea level (MSL) indicators. SSC indicators for different regions as well as time series of combined 4.4 and 18.6 year tidal cycles are provided for summer and winter half years separately; MSL indicators and combined contributions of vertical land motion (VLM) and global mean sea level rise (GMSL) are provided at annual resolution. Estimates of location, scale and shape parameters of generalized extreme value distribution for summer and winter half years in different regions along the US coast are provided. Two animation files present the changes of aggregated sea level over time are also included.
DOI: 10.6084/m9.figshare.9779177
title: Simple signals indicate which period of the annual cycle drives declines in seasonal populations

description: This data describes the long-term population dynamics of seasonal, laboratory populations of <i>Drosophila melanogaster</i> (the common fruit fly) experiencing chronic, multi-generation reductions in habitat. Populations were exposed to habitat loss in either the breeding or non-breeding period (<b>seasonT</b>), and were subject to one of two rates of loss: 10% or 20% per generation (<b>lossT</b>).<br>The data set includes time series of two vital rates and two other intrinsic metrics for each replicate population (<b>repID</b>). Vital rates: log per capita reproductive output (<b>repr</b>), log per capita non-breeding survival (<b>surv</b>). Intrinsic metrics: coefficient of variation (<b>coefvar</b>), lag-1 autocorrelation (<b>autocorr</b>). These values were calculated separately for each replicate using a sliding window of three generations. We also derived a composite of these variable (<b>pc1</b>) using a principal component analysis. presented values are standardized and centred within generation to account for expected divergence of metrics through time. We tested the effect of the season of treatment and generation on reproduction, survival, and reproduction, using separate models for each rate of habitat loss. <br>
DOI: 10.6084/m9.figshare.9779192
title: Sept6supplemental tables FeS.docx

description: Supplemental data showing plasma and urine ferritin levels and urinary biomarker levels following iron sucrose treatment.
DOI: 10.6084/m9.figshare.9779192.v1
title: Sept6supplemental tables FeS.docx

description: Supplemental data showing plasma and urine ferritin levels and urinary biomarker levels following iron sucrose treatment.
DOI: 10.6084/m9.figshare.9779024
title: Sequences_tumour_volume_50mm3

description: Sequences_tumour_volume_50mm3
DOI: 10.6084/m9.figshare.9779036
title: Sequences_tumour_volume_350mm3

description: Sequences_tumour_volume_350mm3
DOI: 10.6084/m9.figshare.9779177.v2
title: Simple signals indicate which period of the annual cycle drives declines in seasonal populations

description: This data describes the long-term population dynamics of seasonal, laboratory populations of <i>Drosophila melanogaster</i> (the common fruit fly) experiencing chronic, multi-generation reductions in habitat. Populations were exposed to habitat loss in either the breeding or non-breeding period (<b>seasonT</b>), and were subject to one of two rates of loss: 10% or 20% per generation (<b>lossT</b>).<br>The data set includes time series of two vital rates and two other intrinsic metrics for each replicate population (<b>repID</b>). Vital rates: log per capita reproductive output (<b>repr</b>), log per capita non-breeding survival (<b>surv</b>). Intrinsic metrics: coefficient of variation (<b>coefvar</b>), lag-1 autocorrelation (<b>autocorr</b>). These values were calculated separately for each replicate using a sliding window of three generations. We also derived a composite of these variable (<b>pc1</b>) using a principal component analysis. presented values are standardized and centred within generation to account for expected divergence of metrics through time. We tested the effect of the season of treatment and generation on reproduction, survival, and reproduction, using separate models for each rate of habitat loss. <br>
DOI: 10.6084/m9.figshare.9779012
title: Metadata_tumour_volume_350mm3

description: Metadata when the tumour had reached 350 mm3
DOI: 10.6084/m9.figshare.9779177.v1
title: Simple signals indicate which period of the annual cycle drives declines in seasonal populations

description: This data describes the long-term population dynamics of seasonal, laboratory populations of <i>Drosophila melanogaster</i> (the common fruit fly) experiencing chronic, multi-generation reductions in habitat. Populations were exposed to habitat loss in either the breeding or non-breeding period (<b>seasonT</b>), and were subject to one of two rates of loss: 10% or 20% per generation (<b>lossT</b>).<br>The data set includes time series of two vital rates and two other intrinsic metrics for each replicate population (<b>repID</b>). Vital rates: log per capita reproductive output (<b>repr</b>), log per capita non-breeding survival (<b>surv</b>). Intrinsic metrics: coefficient of variation (<b>coefvar</b>), lag-1 autocorrelation (<b>autocorr</b>). These values were calculated separately for each replicate using a sliding window of three generations. We also derived a composite of these variable (<b>pc1</b>) using a principal component analysis. presented values are standardized and centred within generation to account for expected divergence of metrics through time. We tested the effect of the season of treatment and generation on reproduction, survival, and reproduction, using separate models for each rate of habitat loss. <br>
DOI: 10.6084/m9.figshare.9779024.v1
title: Sequences_tumour_volume_50mm3

description: Sequences_tumour_volume_50mm3
DOI: 10.6084/m9.figshare.9779036.v1
title: Sequences_tumour_volume_350mm3

description: Sequences_tumour_volume_350mm3
DOI: 10.6084/m9.figshare.9778970
title: human gait phase

description: The data is the frame numbers of each subject’s interior fragment in the standing phase, swing phase and the whole gait circle.
DOI: 10.6084/m9.figshare.9779003
title: Metadata_tumour_volume_50mm3

description: Metadata when the tumours had reached 50 mm3
DOI: 10.6084/m9.figshare.9779003.v1
title: Metadata_tumour_volume_100mm3

description: Metadata when the tumours had reached 100 mm3
DOI: 10.6084/m9.figshare.9779012.v2
title: Metadata_tumour_volume_350mm3

description: Metadata when the tumour had reached 350 mm3
DOI: 10.6084/m9.figshare.9779012.v1
title: Metadata_tumour_volume_700mm3

description: Metadata when the tumour had reached 700 mm3
DOI: 10.6084/m9.figshare.9778721
title: Cytomegalovirus infection and associated hospitalization and costs among individuals undergoing allogeneic hematopoietic stem cell transplant

description: <b>Objective:</b> This study utilized a large, national US database to explore the impact of Cytomegalovirus (CMV) infection on hospital services utilization and costs during the first 100 days following allogeneic hematopoietic stem cell transplant (allo-HSCT). <b>Methods:</b> This retrospective, observational cohort study used data from the Premier Healthcare database to identify patients undergoing their first (index) allo-HSCT procedure between 1 January 2006 and 31 March 2015. Three subgroups were analyzed according to CMV-related readmissions during the 100-day follow-up (0, 1, or 2+ readmissions) to compare healthcare utilization and costs. <b>Results:</b> A total of 1610 patients (mean age, 50.5 years; 56.9% male) from 52 US hospitals met the inclusion criteria. During follow-up, 212 (13.2%) patients had 1 (<i>n</i> = 161; 10.0%) or 2+ (<i>n</i> = 51; 3.2%) CMV-related readmissions. The mean ± SD number of all follow-up encounters (inpatient admissions and hospital-based outpatient visits) was similar for the no CMV (3.9 ± 3.9), 1 CMV (3.7 ± 3.9), and 2+ CMV (4.5 ± 3.8) readmission groups (<i>p</i> = .439). Mean total costs of hospital-based healthcare encounters (inpatient admissions and hospital-based outpatient visits) during follow-up were significantly greater in patients who had a CMV readmission ($111,729 [1 CMV readmission]; $184,021 [2+ CMV readmissions]) compared to those without a CMV readmission ($46,064; <i>p</i> p <b>Conclusions:</b> This large, national database study revealed significantly higher healthcare utilization and costs, as well as mortality, among patients with CMV-related re-hospitalization during the first 100 days post-transplant as compared to patients without CMV-related hospitalization.
DOI: 10.6084/m9.figshare.9778970.v1
title: human gait phase

description: The data is the frame numbers of each subject’s interior fragment in the standing phase, swing phase and the whole gait circle.
DOI: 10.6084/m9.figshare.9778721.v2
title: Cytomegalovirus infection and associated hospitalization and costs among individuals undergoing allogeneic hematopoietic stem cell transplant

description: <b>Objective:</b> This study utilized a large, national US database to explore the impact of Cytomegalovirus (CMV) infection on hospital services utilization and costs during the first 100 days following allogeneic hematopoietic stem cell transplant (allo-HSCT). <b>Methods:</b> This retrospective, observational cohort study used data from the Premier Healthcare database to identify patients undergoing their first (index) allo-HSCT procedure between 1 January 2006 and 31 March 2015. Three subgroups were analyzed according to CMV-related readmissions during the 100-day follow-up (0, 1, or 2+ readmissions) to compare healthcare utilization and costs. <b>Results:</b> A total of 1610 patients (mean age, 50.5 years; 56.9% male) from 52 US hospitals met the inclusion criteria. During follow-up, 212 (13.2%) patients had 1 (<i>n</i> = 161; 10.0%) or 2+ (<i>n</i> = 51; 3.2%) CMV-related readmissions. The mean ± SD number of all follow-up encounters (inpatient admissions and hospital-based outpatient visits) was similar for the no CMV (3.9 ± 3.9), 1 CMV (3.7 ± 3.9), and 2+ CMV (4.5 ± 3.8) readmission groups (<i>p</i> = .439). Mean total costs of hospital-based healthcare encounters (inpatient admissions and hospital-based outpatient visits) during follow-up were significantly greater in patients who had a CMV readmission ($111,729 [1 CMV readmission]; $184,021 [2+ CMV readmissions]) compared to those without a CMV readmission ($46,064; <i>p</i> p <b>Conclusions:</b> This large, national database study revealed significantly higher healthcare utilization and costs, as well as mortality, among patients with CMV-related re-hospitalization during the first 100 days post-transplant as compared to patients without CMV-related hospitalization.
DOI: 10.6084/m9.figshare.9778721.v1
title: Cytomegalovirus infection and associated hospitalization and costs among individuals undergoing allogeneic hematopoietic stem cell transplant

description: <b>Objective:</b> This study utilized a large, national US database to explore the impact of CMV infection on hospital services utilization and costs during the first 100 days following allogeneic hematopoietic stem cell transplant (allo-HSCT). <b>Methods:</b> This retrospective, observational cohort study used data from the Premier Healthcare database to identify patients undergoing their first (index) allo-HSCT procedure between 1/1/2006 and 3/31/2015. Three subgroups were analyzed according to CMV-related readmissions during the 100-day follow-up (0, 1, or 2+ readmissions) to compare healthcare utilization and costs. <b>Results</b>: A total of 1,610 patients (mean age, 50.5 years; 56.9% male) from 52 US hospitals met the inclusion criteria. During follow-up, 212 (13.2%) patients had 1 (n = 161; 10.0%) or 2+ (n = 51; 3.2%) CMV-related readmissions. The mean ± SD number of all follow-up encounters (inpatient admissions and hospital-based outpatient visits) was similar for the no CMV (3.9 ± 3.9), 1 CMV (3.7 ± 3.9), and 2+ CMV (4.5 ± 3.8) readmission groups (P = 0.439). Mean total costs of hospital-based healthcare encounters (inpatient admissions and hospital-based outpatient visits) during follow-up were significantly greater in patients who had a CMV readmission ($111,729 [1 CMV readmission]; $184,021 [2+ CMV readmissions]) compared to those without a CMV readmission ($46,064; P <b>Conclusions</b>: This large, national database study revealed significantly higher healthcare utilization and costs, as well as mortality, among patients with CMV-related re-hospitalization during the first 100 days post-transplant as compared to patients without CMV-related hospitalization.