cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xx4m9h
title: Occurrence Download

description: A dataset containing 2842 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((9.25984 47.49595,9.26642 47.49595,9.26642 47.50219,9.25984 47.50219,9.25984 47.49595))",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 2842 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022106-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tvqy9
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Turgenia latifolia",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022107-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjggjw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Turgenia latifolia",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022109-250914085247600/datasets/export for details.
DOI: 10.15468/dl.pky8ku
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Ehrharta stipoides",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022110-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f28efv
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Forsythia suspensa"
 ]
}

 The dataset includes 689 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022111-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17164288
title: Data for "Phase reduction analysis of traveling breathers in reaction–diffusion systems"

description: This dataset contains the time-series data of the phase differences shown in Fig. 6, Fig. 8, and Fig. 14 of the following paper:> T. Arai and Y. Kawamura, Phase reduction analysis of traveling breathers in reaction–diffusion systems, Physical Review Research (2025, in-press).Each file corresponds to a specific figure in the paper. The file names indicate the associated figure and the coupling intensity ε used in the simulations. The suffix state<number> in each file name denotes the index of the trajectory.
DOI: 10.5281/zenodo.17164365
title: Data for "Phase reduction analysis of traveling breathers in reaction–diffusion systems"

description: This dataset contains the time-series data of the phase differences shown in Fig. 6, Fig. 8, and Fig. 14 of the following paper:> T. Arai and Y. Kawamura, Phase reduction analysis of traveling breathers in reaction–diffusion systems, Physical Review Research (2025, in-press).Each file corresponds to a specific figure in the paper. The file names indicate the associated figure and the coupling intensity ε used in the simulations. The suffix state<number> in each file name denotes the index of the trajectory.
DOI: 10.15468/dl.dhetk4
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Elephantopus hirtiflorus",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 189 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022112-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30041652
title: Deletion of the African swine fever virus E120R gene completely attenuates its virulence by enhancing host innate immunity and impairing virus release

description: African swine fever virus (ASFV) causes a lethal haemorrhagic disease in domestic pigs and poses a major threat to the global swine industry. Currently, no effective commercial vaccines or antiviral drugs are available for ASF control. In this study, we constructed a recombinant E120R gene-deleted virus, ASFV-ΔE120R, based on the highly virulent genotype II strain SY18, to investigate the role of the E120R gene. ASFV-ΔE120R exhibited impaired virion release and formed aberrant tubular structures, rendering viral particles more susceptible to neutralization by convalescent pig sera. ASFV-ΔE120R induced higher levels of transcription of Cytokines, chemokines, and interferon-regulated genes in porcine alveolar macrophages compared with ASFV-WT. In vivo safety evaluation demonstrated that piglets immunized with 5 × 10⁶ TCID₅₀ of ASFV-ΔE120R exhibited no clinical signs or viral nucleic acid in tissues at necropsy on days 4, 7, 10, and 14 post-immunization. Two immunizations at the same dose, 21 days apart, also induced no clinical signs or viral shedding during a 28-day observation. Immunogenicity analysis showed that ASFV-ΔE120R elicited p54-specific antibodies and IFN-γ-secreting PBMC responses. Upon challenge with parental ASFV SY18, two of five pigs (40%) survived, showing elevated antibody levels, IFN-γ-secreting PBMCs, and increased CD8<sup>+</sup> IFN-γ<sup>+</sup> T cells. Moreover, Cytokines and interferon-stimulated genes were significantly upregulated in survivors. In summary, ASFV-ΔE120R is fully attenuated, safe, and induces both humoral and cellular immune responses, highlighting pE120R as a rational target for ASF vaccine development.
DOI: 10.6084/m9.figshare.30041652.v2
title: Deletion of the African swine fever virus E120R gene completely attenuates its virulence by enhancing host innate immunity and impairing virus release

description: African swine fever virus (ASFV) causes a lethal haemorrhagic disease in domestic pigs and poses a major threat to the global swine industry. Currently, no effective commercial vaccines or antiviral drugs are available for ASF control. In this study, we constructed a recombinant E120R gene-deleted virus, ASFV-ΔE120R, based on the highly virulent genotype II strain SY18, to investigate the role of the E120R gene. ASFV-ΔE120R exhibited impaired virion release and formed aberrant tubular structures, rendering viral particles more susceptible to neutralization by convalescent pig sera. ASFV-ΔE120R induced higher levels of transcription of Cytokines, chemokines, and interferon-regulated genes in porcine alveolar macrophages compared with ASFV-WT. In vivo safety evaluation demonstrated that piglets immunized with 5 × 10⁶ TCID₅₀ of ASFV-ΔE120R exhibited no clinical signs or viral nucleic acid in tissues at necropsy on days 4, 7, 10, and 14 post-immunization. Two immunizations at the same dose, 21 days apart, also induced no clinical signs or viral shedding during a 28-day observation. Immunogenicity analysis showed that ASFV-ΔE120R elicited p54-specific antibodies and IFN-γ-secreting PBMC responses. Upon challenge with parental ASFV SY18, two of five pigs (40%) survived, showing elevated antibody levels, IFN-γ-secreting PBMCs, and increased CD8<sup>+</sup> IFN-γ<sup>+</sup> T cells. Moreover, Cytokines and interferon-stimulated genes were significantly upregulated in survivors. In summary, ASFV-ΔE120R is fully attenuated, safe, and induces both humoral and cellular immune responses, highlighting pE120R as a rational target for ASF vaccine development.
DOI: 10.6084/m9.figshare.30041652.v1
title: An E120R Gene–Deleted African Swine Fever Virus Is Fully Attenuated and Induces Partial Protective Immunity in Pigs

description: African swine fever virus (ASFV) causes a lethal hemorrhagic disease in domestic pigs and represents a major threat to the global swine industry. Until now, no effective commercial vaccines or antiviral drugs are available for ASF control. In this study, we constructed a recombinant E120R gene-deleted virus, ASFV-ΔE120R, based on the highly virulent genotype II strain SY18, to investigate the biological role of the E120R gene. ASFV-ΔE120R exhibited impaired virion release and formed aberrant tubular structures, rendering viral particles more susceptible to neutralization by convalescent pig sera. RNA sequencing and RT-qPCR analyses revealed that ASFV-ΔE120R infection of porcine alveolar macrophages (PAMs) significantly upregulated the expression of chemokines (CCL5, <i>CCL2</i>, <i>CCL4</i>), interferon-related genes (IRF7, <i>IRF8</i>, <i>ISG15</i>, <i>ISG54</i>, <i>ISG56</i>), and the proinflammatory cytokine <i>IL-1β</i> compared with ASFV-WT. In vivo safety evaluation demonstrated that piglets immunized with a single dose of 5 × 10⁶ TCID₅₀ of ASFV-ΔE120R exhibited no clinical signs of ASF and detectable viral nucleic acid in any organ upon necropsy at days 4, 7, 10, and 14 post-immunization. Notably, even after two rounds of blind cell passage using filtered tissue homogenates, no viral genome was detected. Furthermore, two immunizations at the same dose, administered 21 days apart, did not induce clinical signs or viral shedding during a 28-day observation period. Immunogenicity analysis showed that ASFV-ΔE120R elicited both p54-specific antibody production and IFN-γ–secreting peripheral blood mononuclear cell (PBMC) responses. Upon intramuscular challenge with a lethal dose (10 TCID₅₀) of parental ASFV SY18, two out of five immunized pigs (40%) survived. These survivors displayed increased levels of p54-specific antibodies and IFN-γ–secreting PBMCs. No viral nucleic acid or histopathological lesions were detected in their tissues, and tissue immunofluorescence revealed elevated frequencies of CD8⁺ IFN-γ⁺ T cells. Moreover, mRNA levels of antiviral genes (<i>IFN-α</i>, <i>TNF-α</i>, <i>ISG15</i>, <i>ISG54</i>, <i>ISG56</i>, and MX1) in the liver and bone marrow of surviving pigs were significantly upregulated compared with unvaccinated controls. In summary, ASFV-ΔE120R is fully attenuated and safe, and it induces both humoral and cellular immune responses. This study provides further insights into the role of pE120R in viral egress and immune evasion, and highlights its potential as a rational target for the development of live attenuated ASF vaccines.
DOI: 10.15468/dl.rgqd5c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achillea micrantha",
 "Country is Belarus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022113-250914085247600/datasets/export for details.
DOI: 10.15468/dl.aeqer5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achillea micrantha",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022114-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zr93k8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achillea micrantha",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022115-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15490209
title: Data from: Microplastics threaten seagrass carbon sinks through microbial changes

description: A 28-day mesocosm experiment examined the effect of microplastics and nutrient enrichment (NE) on eelgrass (Zostera marina). We tested concentrations of 320 mg MPs per 100 g DW sediment-1 and 70 mg of total nitrogen per 100 g DW sediment-1 to evaluate impacts on plant performance, microbiome composition and detritus decomposition (after 60-days assay). MPs reduced leaf growth rate (-39%), net production (-57%) and rhizome elongation (-35%), while NE shifted microbial assemblages, increasing phyllosphere and rhizosphere by 1.6-fold. MPs favored the growth of microbial taxa related with the consumption of plant-derived polysaccharides and lignin compounds (1.7-fold higher), accelerating detritus decomposition by 1.5-fold. Critically, MPs produced a notable decrease of bacteria involved in sulfur-cycle (0.45-fold lower under combined MPs+NE vs. NE alone), disrupting REDOX processes essential for seagrass survival in reducing sediments. By reducing plant growth, altering microbial communities and accelerating organic matter turnover, MPs compromise the carbon sequestration capacity of eelgrass meadows. These findings evidence the need for policies addressing plastic pollution to safeguard seagrass ecosystem services.
DOI: 10.5281/zenodo.15490210
title: Data from: Microplastics threaten seagrass carbon sinks through microbial changes

description: A 28-day mesocosm experiment examined the effect of microplastics and nutrient enrichment (NE) on eelgrass (Zostera marina). We tested concentrations of 320 mg MPs per 100 g DW sediment-1 and 70 mg of total nitrogen per 100 g DW sediment-1 to evaluate impacts on plant performance, microbiome composition and detritus decomposition (after 60-days assay). MPs reduced leaf growth rate (-39%), net production (-57%) and rhizome elongation (-35%), while NE shifted microbial assemblages, increasing phyllosphere and rhizosphere by 1.6-fold. MPs favored the growth of microbial taxa related with the consumption of plant-derived polysaccharides and lignin compounds (1.7-fold higher), accelerating detritus decomposition by 1.5-fold. Critically, MPs produced a notable decrease of bacteria involved in sulfur-cycle (0.45-fold lower under combined MPs+NE vs. NE alone), disrupting REDOX processes essential for seagrass survival in reducing sediments. By reducing plant growth, altering microbial communities and accelerating organic matter turnover, MPs compromise the carbon sequestration capacity of eelgrass meadows. These findings evidence the need for policies addressing plastic pollution to safeguard seagrass ecosystem services.
DOI: 10.5281/zenodo.17165465
title: This dataset inlcudes all original data produced and used in the paper of Huang et al. entitled 'Glacial impacts on sedimentation off Enderby Land, East Antarctica during the past two glacial cycles'.
DOI: 10.15468/dl.rgvx79
title: Occurrence Download

description: A dataset containing 2012 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Elymus elymoides",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 2012 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022116-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.862se5
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achillea nobilis",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022120-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3pqke
title: Occurrence Download

description: A dataset containing 943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eucommia ulmoides"
 ]
}

 The dataset includes 943 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022117-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mgf8v
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achillea nobilis",
 "Country is Belarus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022118-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9rskf
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achillea nobilis",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 68 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022119-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25505/fiz.icsd.cc2mks33
title: CSD 2430155: Experimental Crystal Structure Determination

description: Related Article: Rahul Pan, Krishnendu Buxi, Farid Labib, Amit Mondal, Bibhas Ghanta, Sandip Kumar Kuila, Anup Kumar Bera, Ahin Roy, Ryuji Tamura, Partha Pratim Jana|2025|J.Alloys Compd.|1040|183208|doi:10.1016/j.jallcom.2025.183208
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2mks44
title: CSD 2430156: Experimental Crystal Structure Determination

description: Related Article: Rahul Pan, Krishnendu Buxi, Farid Labib, Amit Mondal, Bibhas Ghanta, Sandip Kumar Kuila, Anup Kumar Bera, Ahin Roy, Ryuji Tamura, Partha Pratim Jana|2025|J.Alloys Compd.|1040|183208|doi:10.1016/j.jallcom.2025.183208
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2mks55
title: CSD 2430157: Experimental Crystal Structure Determination

description: Related Article: Rahul Pan, Krishnendu Buxi, Farid Labib, Amit Mondal, Bibhas Ghanta, Sandip Kumar Kuila, Anup Kumar Bera, Ahin Roy, Ryuji Tamura, Partha Pratim Jana|2025|J.Alloys Compd.|1040|183208|doi:10.1016/j.jallcom.2025.183208
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.pnbrav
title: Occurrence Download

description: A dataset containing 2266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Elymus glaucus",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 2266 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022121-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17165414
title: Chapter 4 : IRE1 in Triple Negative Breast Cancer - Bianka Alexandra Pasat - PhD thesis chapter

description: Full results supporting data for Bianka Alexandra Pasat's PhD thesis - Chapter 4
DOI: 10.15468/dl.um9g4w
title: Occurrence Download

description: A dataset containing 4243 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "GadmGid is BEN",
 "OccurrenceStatus is Present",
 "TaxonKey is Viruses"
 ]
}

 The dataset includes 4243 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022122-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.