cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.efmzkz
title: Occurrence Download

description: A dataset containing 1841 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picris pauciflora Willd."
 ]
}

 The dataset includes 1841 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078443-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxfqsb
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa pilata Chase"
 ]
}

 The dataset includes 24 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078444-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85zrac
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylica polifolia (Vahl) Pillans"
 ]
}

 The dataset includes 41 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078445-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqemh7
title: Occurrence Download

description: A dataset containing 1135 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picris rhagadioloides (L.) Desf."
 ]
}

 The dataset includes 1135 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078446-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5rfpbr
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa pitardiana H.Scholz"
 ]
}

 The dataset includes 22 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078447-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7r59sw
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylica propinqua Sond."
 ]
}

 The dataset includes 51 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078448-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.acnwuw
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa platyantha Kom."
 ]
}

 The dataset includes 289 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078449-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.453y8p
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picris scaberrima Guss."
 ]
}

 The dataset includes 89 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078450-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93tvjw
title: Occurrence Download

description: A dataset containing 4990431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.9_1",
 "OccurrenceStatus is Present",
 "Year 2014-2015"
 ]
}

 The dataset includes 4990431 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078432-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2ff5q
title: Occurrence Download

description: A dataset containing 931 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Argiope aetherea (Walckenaer, 1841)"
 ]
}

 The dataset includes 931 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078451-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mue2b
title: Occurrence Download

description: A dataset containing 719 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylica pubescens Aiton"
 ]
}

 The dataset includes 719 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078452-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvfywq
title: Occurrence Download

description: A dataset containing 430 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poa polycolea Stapf"
 ]
}

 The dataset includes 430 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078453-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5398n
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picris scabra Forssk."
 ]
}

 The dataset includes 72 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078454-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.an8bqf
title: Occurrence Download

description: A dataset containing 15316 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nephila pilipes (Fabricius, 1793)"
 ]
}

 The dataset includes 15316 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078455-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x752bz
title: Occurrence Download

description: A dataset containing 50679 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygonum arenastrum Boreau"
 ]
}

 The dataset includes 50679 records from 636 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078435-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.11742201
title: Additional file 16 of The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis

description: Additional file 16: Table S9. List of reagents and resources.
DOI: 10.6084/m9.figshare.11742201.v1
title: Additional file 16 of The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis

description: Additional file 16: Table S9. List of reagents and resources.
DOI: 10.6084/m9.figshare.7020764
title: Additional file 3: of Heterogeneous mutation pattern in tumor tissue and circulating tumor DNA warrants parallel NGS panel testing

description: Table S2. Somatic alterations detected in cfDNA of NSCLC patients. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.19603636.v1
title: Additional file 4 of Characterization of microbiome and metabolite analyses in patients with metabolic associated fatty liver disease and type II diabetes mellitus

description: Additional file 4: Additional Table S2. Clinical Parameters in M and MD patients and Ctr healthy participants.
DOI: 10.6084/m9.figshare.19603636
title: Additional file 4 of Characterization of microbiome and metabolite analyses in patients with metabolic associated fatty liver disease and type II diabetes mellitus

description: Additional file 4: Additional Table S2. Clinical Parameters in M and MD patients and Ctr healthy participants.
DOI: 10.6084/m9.figshare.7020758
title: Additional file 1: of MiR-320 regulates cardiomyocyte apoptosis induced by ischemiaâ reperfusion injury by targeting AKIP1

description: Results of miRNA microarray. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.11742222
title: Additional file 3 of The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis

description: Additional file 3: Table S1. Quantitative estimation of target metabolites in HEK293T and A549 cells.
DOI: 10.6084/m9.figshare.21700829.v1
title: MicroRNA-455-3p accelerate malignant progression of tumor by targeting H2AFZ in colorectal cancer

description: Colorectal cancer (CRC) becomes the second leading cause of cancer-related deaths in 2020. Emerging studies have indicated that microRNAs (miRNAs) play a key role in tumorigenesis and progression. The dysfunctions of miR-455-3p are observed in many cancers. However, its biological function in CRC remains to be confirmed. By sequencing serum sample, miR-455-3p was found to be up-regulated in CRC patients. RT-qPCR demonstrated that the miR-455-3p expression was both higher in the serum and tumor tissues of CRC patients. Furthermore, it indicated that miR-455-3p had the ability in promoting cell proliferation, suppressing cell apoptosis, and stimulating cell migration. <i>In vivo</i> experiments also showed that miR-455-3p promoted tumor growth. Additionally, H2AFZ was proved as the direct gene target of miR-455-3p by dual-luciferase assay. Taken together, miR-455-3p functioned as a tumor promoter in CRC development by regulating H2AFZ directly. Thus, it has enormous potential as a biomarker in the diagnosis of CRC.
DOI: 10.6084/m9.figshare.11742222.v1
title: Additional file 3 of The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis

description: Additional file 3: Table S1. Quantitative estimation of target metabolites in HEK293T and A549 cells.
DOI: 10.6084/m9.figshare.7020752
title: MOESM3 of Tumor-associated macrophages derived CCL18 promotes metastasis in squamous cell carcinoma of the head and neck

description: Additional file 3.Â  KEGG pathway enrichment analysis for the DEGs
DOI: 10.6084/m9.figshare.11742231
title: Additional file 4 of The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis

description: Additional file 4: Table S2. Quantitative 13C tracing in target metabolites in HEK293T and A549 cells.
DOI: 10.6084/m9.figshare.11742231.v1
title: Additional file 4 of The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis

description: Additional file 4: Table S2. Quantitative 13C tracing in target metabolites in HEK293T and A549 cells.
DOI: 10.6084/m9.figshare.11742249
title: Additional file 7 of The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis

description: Additional file 7: Table S3. List of all identified proteins pulled down with TRAP1 using an IP-MS analysis with WT TRAP1, and the TRAP1 mutants E115A/R402A and Î”Strap.
DOI: 10.6084/m9.figshare.11742249.v1
title: Additional file 7 of The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis

description: Additional file 7: Table S3. List of all identified proteins pulled down with TRAP1 using an IP-MS analysis with WT TRAP1, and the TRAP1 mutants E115A/R402A and Î”Strap.
DOI: 10.6084/m9.figshare.11742255
title: Additional file 8 of The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis

description: Additional file 8: Table S4. List of high confidence TRAP1 interacting proteins (from Additional file 10: Table S3) filtered for mitochondrial localization and a minimum of 4 or more identified unique peptides (with a few exceptions).
DOI: 10.6084/m9.figshare.11742255.v1
title: Additional file 8 of The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis

description: Additional file 8: Table S4. List of high confidence TRAP1 interacting proteins (from Additional file 10: Table S3) filtered for mitochondrial localization and a minimum of 4 or more identified unique peptides (with a few exceptions).
DOI: 10.6084/m9.figshare.11742258
title: Additional file 9 of The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis

description: Additional file 9: Table S5. List of mitochondrial proteins identified in the SILAC analysis comparing WT to TRAP1 KO UMUC3 cells. Note that only those proteins were considered that were identified and quantitated in all three replicates.
DOI: 10.6084/m9.figshare.11742258.v1
title: Additional file 9 of The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis

description: Additional file 9: Table S5. List of mitochondrial proteins identified in the SILAC analysis comparing WT to TRAP1 KO UMUC3 cells. Note that only those proteins were considered that were identified and quantitated in all three replicates.
DOI: 10.6084/m9.figshare.25212908
title: 2021 Store Survey Data from SNAP Retailers in Indianapolis, IN

description: This dataset compiles data from a survey of SNAP retailers in Indianapolis, IN, during most of 2021. Stores were assessed based on the availability, price, and quantity of certain nutritious foods in stock at the time of the visit. All retailers were additionally classified by the USDA into store types.
DOI: 10.6084/m9.figshare.25212908.v2
title: 2021 Store Survey Data from SNAP Retailers in Indianapolis, IN

description: This dataset compiles data from a survey of SNAP retailers in Indianapolis, IN, during most of 2021. Stores were assessed based on the availability, price, and quantity of certain nutritious foods in stock at the time of the visit. All retailers were additionally classified by the USDA into store types.
DOI: 10.6084/m9.figshare.25212908.v1
title: 2021 Store Survey Data from SNAP Retailers in Indianapolis, IN

description: This dataset compiles data from a survey of SNAP retailers in Indianapolis, IN, during most of 2021. Stores were assessed based on the availability, price, and quantity of certain nutritious foods in stock at the time of the visit. All retailers were additionally classified by the USDA into store types.
DOI: 10.6084/m9.figshare.20652257.v1
title: Additional file 3 of The Janus-faced role of TRPM2-S in retroperitoneal liposarcoma via increasing ROS levels

description: Additional file 2. The detailed clinical characteristics and TRPM2-S & L-IHC score of RPLS patients.
DOI: 10.6084/m9.figshare.20652254.v1
title: Additional file 2 of The Janus-faced role of TRPM2-S in retroperitoneal liposarcoma via increasing ROS levels

description: Additional file 1. The detailed clinical characteristics and TRPM2-L-IHC score of RPLS patients.
DOI: 10.6084/m9.figshare.20652257
title: Additional file 3 of The Janus-faced role of TRPM2-S in retroperitoneal liposarcoma via increasing ROS levels

description: Additional file 2. The detailed clinical characteristics and TRPM2-S & L-IHC score of RPLS patients.
DOI: 10.6084/m9.figshare.20652260.v1
title: Additional file 4 of The Janus-faced role of TRPM2-S in retroperitoneal liposarcoma via increasing ROS levels

description: Additional file 3. The DFS-prognostic genes screened by Cox analysis in TCGA-RPLS.
DOI: 10.6084/m9.figshare.7020764.v1
title: Additional file 3: of Heterogeneous mutation pattern in tumor tissue and circulating tumor DNA warrants parallel NGS panel testing

description: Table S2. Somatic alterations detected in cfDNA of NSCLC patients. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.13312212.v2
title: Silencing long non-coding RNA NEAT1 attenuates rheumatoid arthritis via the MAPK/ERK signalling pathway by downregulating microRNA-129 and microRNA-204

description: The participation of long noncoding RNAs (lncRNAs) and microRNAs (miRs) in the progression of rheumatoid arthritis (RA) is a key area of investigation. The current study aimed to investigate the action of lncRNA nuclear paraspeckle assembly transcript 1 (NEAT1) in fibroblast-like synoviocyte (FLS) proliferation and synovitis in RA. A rat model of RA was established. LncRNA NEAT1 expression in the synovial tissues of patients with RA and FLSs from the RA rat model was determined using RT-qPCR. Next, dual luciferase reporter gene assay was applied to investigate the relationship between miR-129/204 and mitogen-activated protein kinase (MAPK)/extracellular regulated protein kinase (ERK). A putative binding relationship between miR-204 and lncRNA NEAT1 was evaluated by RIP assay, and miR-129 promoter methylation was determined using MSP. After the expression of lncRNA NEAT1, miR-129 or miR-204 was altered in FLSs, the extent of ERK1/2 phosphorylation was assessed. In addition, FLS synovitis and proliferation were determined by ELISA and EdU assay, respectively. In RA rats, lncRNA NEAT1 was silenced and miR-129/miR-204 was overexpressed to explore their roles <i>in vivo</i>. LncRNA NEAT1 was upregulated, while miR-129 and miR-204 were downregulated in RA synovial tissues and FLSs. MAPK1 was target gene of both miR-129 and miR-204. LncRNA NEAT1 bound to miR-204 and promoted miR-129 promoter methylation. Silencing lncRNA NEAT1 or overexpressing miR-129/miR-204 enhanced miR-129/miR-204 expression, but reduced the extent of ERK1/2 phosphorylation, proliferation of FLSs, and synovitis in RA. Collectively, silencing lncRNA NEAT1 promoted miR-129 and miR-204 to inhibit the MAPK/ERK signalling pathway, reducing FLS synovitis in RA. <b>Abbreviations:</b> ACR: American College of Rheumatology; ELISA: Enzyme-linked immunosorbent assay; ERK: extracellular signal-regulated kinase; FLS: fibroblast-like synoviocyte; GADPH: glyceraldehyde-3-phosphate dehydrogenase; HRP: horseradish peroxidase; IFA: Incomplete Freund’s Adjuvant; lncRNAs: long noncoding RNAs; MSP: Methylation-specific PCR; NC: negative control; NEAT1: nuclear paraspeckle assembly transcript 1; OD: optical density; RA: rheumatoid arthritis; RIPA: Radio Immunoprecipitation Assay; RLU: relative light units; RT-qPCR: reverse transcription quantitative polymerase chain reaction; UTR: untranslated region.
DOI: 10.6084/m9.figshare.21700829
title: MicroRNA-455-3p accelerate malignant progression of tumor by targeting H2AFZ in colorectal cancer

description: Colorectal cancer (CRC) becomes the second leading cause of cancer-related deaths in 2020. Emerging studies have indicated that microRNAs (miRNAs) play a key role in tumorigenesis and progression. The dysfunctions of miR-455-3p are observed in many cancers. However, its biological function in CRC remains to be confirmed. By sequencing serum sample, miR-455-3p was found to be up-regulated in CRC patients. RT-qPCR demonstrated that the miR-455-3p expression was both higher in the serum and tumor tissues of CRC patients. Furthermore, it indicated that miR-455-3p had the ability in promoting cell proliferation, suppressing cell apoptosis, and stimulating cell migration. <i>In vivo</i> experiments also showed that miR-455-3p promoted tumor growth. Additionally, H2AFZ was proved as the direct gene target of miR-455-3p by dual-luciferase assay. Taken together, miR-455-3p functioned as a tumor promoter in CRC development by regulating H2AFZ directly. Thus, it has enormous potential as a biomarker in the diagnosis of CRC.
DOI: 10.6084/m9.figshare.7020785
title: Additional file 4: of Heterogeneous mutation pattern in tumor tissue and circulating tumor DNA warrants parallel NGS panel testing

description: Table S3. Validation of ctDNA variants by ddPCR. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7020800
title: Additional file 5: of Heterogeneous mutation pattern in tumor tissue and circulating tumor DNA warrants parallel NGS panel testing

description: Table S4. Somatic alterations detected in tumor of NSCLC patients. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7020800.v1
title: Additional file 5: of Heterogeneous mutation pattern in tumor tissue and circulating tumor DNA warrants parallel NGS panel testing

description: Table S4. Somatic alterations detected in tumor of NSCLC patients. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7020902
title: Additional file 2: of Systematic evaluation of isoform function in literature reports of alternative splicing

description: Contains a list of all human and mouse literature we curated for this study, and curatorsâ s annotations for each study. (XLSX 187 kb)
DOI: 10.6084/m9.figshare.16601402.v6
title: PubMed classification 202302

description: The classification contains about 20 million PubMed publications from 1995 onward. It has been created using clustering in a citation network. 
The February 2023 update is a complete new version of the classification based on new clustering and labeling.
File description
PMID_cluster_relation_[date].csv contains the relation between PMIDs and clusters. Four levels are included:

 Level 1 - Topics - Most granular
 Level 2 - Specialties
 Level 3 - Disciplines
 Level 4 - Discipline group - Most coarse

Labels
For each level there is a table with labels (e.g. labels_lev1_[date].csv), related by an id (e.g lev1_cluster_id).
Stats
For each level there is a table with statistics (e.g. lev1_stats). The table includes the columns below. For more information about the "Clinical", "Human", "Animal" and "Molecular/Cellular Biology" categories, see https://nih.figshare.com/collections/iCite_Database_Snapshots_NIH_Open_Citation_Collection_/4586573

 p - The number of publications in the cluster in the initial clustering. 
 pct_clinical - The proportion of clinical articles  
 sum_clinical - The number of clinical articles 
 pct_human - The average of the fraction of MeSH terms that are in the "Human" category 
 sum_human - The sum of fraction of MeSH terms that are in the "Human" category 
 pct_animal - The average of the fraction of MeSH terms that are in the "Animal" category 
 sum_animal - The sum of fraction of MeSH terms that are in the "Animal" category 
 pct_molecular_cellular - The average of the fraction of MeSH terms that are in the "Molecular/Cellular Biology" category 
 sum_molecular_cellular - The sum of fraction of MeSH terms that are in the "Molecular/Cellular Biology" category

Added publications
Added_pubs_version_[nih occ version].csv contains the same information as above, but for publications that have been assigned to clusters after the initial clustering proceedure.  
Visualizations:

 Base map of PubMed 2010-2022
 Map of PubMed 2022 - Including hyperlinks to publications
 Map colored by % Clinical
 Map colored by % Human
 Map colored by % Animal<br>
Map colored by % Molecular/Cellular

See the figshare collection for further description.
DOI: 10.6084/m9.figshare.7020920.v1
title: Additional file 3: of Systematic evaluation of isoform function in literature reports of alternative splicing

description: Contains the list of human and mouse genes with literature evidence for functionally distinct splice isoforms found in our curation. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.20652254
title: Additional file 2 of The Janus-faced role of TRPM2-S in retroperitoneal liposarcoma via increasing ROS levels

description: Additional file 1. The detailed clinical characteristics and TRPM2-L-IHC score of RPLS patients.