cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5ks6jh9p
title: MassIVE MSV000099314 - AI-Controlled Autonomous Proteomics
title: All datasets were acquired during the development and benchmarking of an AI-driven mass spectrometry proteomics method, AI-Driven Acquisition (AIDA). The experiments were done either using an Orbitrap Eclipse [(i)-1 to (i)-7, (i)-9, (ii)-1 to (ii)-5, (iii), (iv)-1 to 2] or an Orbitrap Astral [(i)-8, (ii)-6, (iv)-3)] mass spectrometer. Multiplexing was achieved using either TMT35 [(i)-9, (iii), (iv)-2] TMT18 reagents [all other experiments but (iv)-3 where label-free quantification was applied]. Basic pH reversed-phase chromatography (bRPLC) was used for off-line pre-fractionation(PMID: 26700037) for one experiment [(i)-7]; if multiple TMT sets were required to analyze all samples from an experiment, bridge channels pooled from all samples were used to connect the data from the individual TMT sets (PMID: 28892078). Four proteomics experiments are described in the manuscript: (i) Quantitative proteomics of 6 cancer cell lines (6CCL) with TMT18, or 10 cancer cell lines with TMT35 (10CCL) as described in Figure 3. 1. AIDA acquired 6CCL data - 3 samples - Eclipse - 1_6CCL 2. AIDA used for a second round to acquire 6CCL data from the first round - 3 samples - Eclipse - 2_6CCL 3. Real-Time-Search (RTS) acquired 6CCL data - 3 samples -Eclipse - 3_6CCL 4. RTS used for a second round to acquire 6CCL data from the first round - 3 samples - Eclipse - 4_6CCL 5. AIDA+ acquired 6CCL Data - 3 samples - Eclipse - 5_6CCL 6. Entrapment runs where AIDA was used to acquire 6CCL data - 3 samples - Eclipse - 6_6CCL 7. 12 Fractionated 6CCL Samples acquired using RTS - 12 samples - Eclipse - 7_6CCL 8. High-Res MS2 acquired 6CCL - 3 samples - Astral - 8_6CCL 9. AIDA+ acquired 10CCL Data - 3 samples - Eclipse - 9_6CCL Labeling scheme in Figure 3a. (ii) Quantitative proteomics of TMT18 labeled Yeast-Human-Two-Proteome (Y2P) samples as described in Figure 3. 1. RTS acquired Y2P - 3 samples - Eclipse - 10_Y2P 2. High Res MS2 acquired Y2P - 3 samples - Eclipse - 11_Y2P 3. AIDA acquired Y2P - 3 samples - Eclipse - 12_Y2P 4. AIDA with original MS3 Fragments acquired Y2P - 3 samples - Eclipse - 13_Y2P 5. AIDA+ acquired Y2P - 3 samples - Eclipse - 14_Y2P 6. High-Res MS2 acquired Y2P - 3 samples - Astral - 15_Y2P Labeling scheme in Figure 3e. (iii) Quantitative proteomics of TMT35 labeled Breast Cancer Tumor Tissue as described in Figure 4. 1. AIDA+ double shot acquired Breast Tumor Data - 8 TMT sets - 16 samples - Eclipse - 16_Breast Labeling Scheme in Table S18 (iv) Quantitative proteomics of TMT18 labeled Lung Cancer Patient Plasma as described in Figure 5. 1. AIDA+ Single shot and replicate acquired Lung Cancer Plasma Data - 89 TMTs - 100 samples - Eclipse - 17_Plasma 2. AIDA+ acquired TMT 35 Plasma Data - 3 samples - Eclipse - 18_Plasma 3. DIA Acquired unlabeled Plasma Data - 3 samples - Astral - 19_Plasma Labeling Scheme in Table S23
DOI: 10.57710/alba-es-20250330089
title: Decoding the Fate of Sublytic Membrane Attack Complexes in CD59-Positive and Negative Cells Using Cryo-Correlative Imaging

description: null
DOI: 10.15468/dl.rth44q
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ARG.6_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tolypeutes matacus"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030198-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57710/alba-es-2024098932
title: X-ray Studies of Large Proteins, Protein-Nucleic Acid Complexes and Carbohydrate modifying enzymes.

description: This is a BAG proposal submitted by three research groups of two internationally recognized institutions. Prof. Ignasi Fita (PI), leading the team at IBMB-CSIC, his primary focus lies in the structural investigation of macromolecular complexes, soluble proteins, and membrane proteins associated with the terminal organelle of Mycoplasmas within the pneumoniae cluster. These proteins play crucial roles in the parasitic lifestyle and gliding motility of Mycoplasmas. The group led by Prof. Nuria Verdaguer (PI) at IBMB-CSIC concentrates on unraveling the structure-function relationships of proteins and macromolecular complexes central to pathological processes. Their research spans virus particles, proteins, and complexes involved in RNA virus replication, as well as enigmatic structures like the eukaryotic vault particle. The group led by Prof. Marcelo Guerin (PI), specializes in understanding the structural determinants and substrate specificity modulation of Carbohydrate-Active family of Enzymes (CAZYmes). 
While each group has its unique area of expertise, they collectively share a common goal: to uncover the structural foundations of biological machineries in both healthy and pathological conditions. This collaborative endeavor holds immense promise in advancing our understanding of the complex molecular mechanisms governing several biological processes.
DOI: 10.15468/dl.wmf5nu
title: Occurrence Download

description: A dataset containing 6277 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neotoma fuscipes"
 ]
}

 The dataset includes 6277 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030196-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4beja8
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyanoderma rufifrons",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 127 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030199-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6ghfq
title: Occurrence Download

description: A dataset containing 165805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Catharus fuscescens",
 "HasCoordinate is TRUE",
 "Year is 2023"
 ]
}

 The dataset includes 165805 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030146-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.336dzq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calystegia hederacea",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030201-250920141307145/datasets/export for details.
DOI: 10.7910/dvn/nkikox
title: Replication Data for: Revisiting the Relationship Between Legislative Power-Sharing and Autocratic Survival

description: Conventional wisdom holds that legislatures stabilize autocratic rule by helping leaders credibly commit to sharing power with regime insiders, but empirical support for this claim remains limited. Data limitations make it impossible to directly measure the extent of legislative power-sharing across time and space, leading scholars to use the presence or absence of a legislature as a proxy. I conceptualize legislative power-sharing as a continuous trait and estimate it using a dynamic Bayesian latent variable model for all autocracies from 1946 to 2023. After validating the measure, I use it to replicate previous studies of the relationship between legislative power-sharing and autocratic survival. I find that their results do not hold. If anything, legislative power-sharing appears to be associated with greater, not less, vulnerability to being removed from office by coups and revolts. I suggest that scholars should devote more attention to the threat-enhancing effects of authoritarian institutions.
DOI: 10.15468/dl.bqvahk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calystegia hederacea",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030200-250920141307145/datasets/export for details.
DOI: 10.57710/alba-es-2024098934
title: Towards personalized molecular medicine: Structural basis of neurodegenerative diseases and cancer (X)

description: Detailed knowledge of the three-dimensional (3D) structures of proteins and their complexes is essential to understand their pathophysiological roles, and to develop novel therapeutic compounds (rational drug design). We will exploit our recent structure of the homodimeric androgen receptor ligand binding domain (AR-LBD) as a starting point to develop novel drugs to treat prostate cancer. Further, we will crystallize and resolve the crystal structures of wild-type and mutant AR-LBD bound to agonist and antagonist compounds. We will also characterize the interactome of three nuclear receptors that are essential regulators of neural stem cells, GR, TLX and PNR, and resolve 3D structures of their most relevant complexes. These receptors have been recently associated with the onset and progression of brain tumours and various human neurological disorders and are therefore attractive drug targets. Another major aim of the current proposal is to contribute to the understanding of the aetiology of two important neurodegenerative diseases: Parkinson’s disease and Spinal Muscular Atrophy (SMA). We will solve the 3D crystal structure of the kinase domain of the parkin activator, PINK, both free and bound to substrates, to rationalize on a structural basis the recognition mechanism of its (patho)physiologically relevant substrates, most
notably of ubiquitin and parkin itself. We will continue our structure-and-function studies of the mechanism by which two nuclear splicing factors, hnRNP A1 and Sam68, cooperate to exclude
exon 7 from SMN2 premRNA. This exon-skipping event is critical for the development of SMA in
affected individuals, who lack a functional copy of the “normal” SMN1 gene. We will solve the crystal structures of Sam68-RNA and hnRNP A1-RNA complexes using oligonucleotides that correspond to their binding sites on SMN2 exon 7. Finally, we will solve the structure of the Nterminal,
regulatory domain of human TET2 protein, a key regulator of AR, GR and TLX.
DOI: 10.25500/edata.bham.00001365
title: Research data supporting the publication "Air Pollution Emissions from Vehicles as a Function of Their Current Real- World Market Price"

description: Ethics & privacy: All vehicle identifiers have been anonymised to comply with GDPR; only technical information is retained.
description: The dataset provides estimated retail prices (£) for vehicles, obtained using a machine learning model trained on market data. These estimates allow for linking environmental performance with economic indicators.
DOI: 10.57710/alba-es-20250340094
title: Understanding the mechanism of action of novel carbon nano-onions via the subcellular ultrastructural changes visualised by soft X-ray tomography

description: null
DOI: 10.7910/dvn/gdxdrt
title: Replication Data for: When Do Citizens Support Peace-Building? Economic Hardship and Civilian Support for Rebel Reintegration

description: Replication data and code for "When Do Citizens Support Peace-Building? Economic Hardship and Civilian Support for Rebel Reintegration" See Readme file for further details.
DOI: 10.57710/alba-es-20250340445
title: Leveraging cryo-SXT to define gold-standard organelle morphology distributions for improved 3D segmentation

description: null
DOI: 10.5281/zenodo.17227352
title: Linking Physicochemical Conditions and Stoichiometry to Stream Metabolism and Carbon Cycling

description: This repository contains data, R code, graphical objects, and outputs in Kelley and Xenopoulos (2025) manuscript investigating physicochemical and stoichiometric controls on stream metabolism and carbon uptake.

Metadata to be added in subsequent versions.
DOI: 10.5281/zenodo.17227353
title: Linking Physicochemical Conditions and Stoichiometry to Stream Metabolism and Carbon Cycling

description: This repository contains data, R code, graphical objects, and outputs in Kelley and Xenopoulos (2025) manuscript investigating physicochemical and stoichiometric controls on stream metabolism and carbon uptake.

Metadata to be added in subsequent versions.
DOI: 10.15468/dl.2bxss2
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calystegia hederacea",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030202-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zca89k
title: Occurrence Download

description: A dataset containing 280602 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rattus norvegicus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 280602 records from 995 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030170-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fy6g6t
title: Occurrence Download

description: A dataset containing 1806856 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry MULTIPOLYGON(((-80.57565 35.26212,-80.48967 35.34969,-80.53099 35.54785,-80.82514 35.68069,-81.15329 35.68825,-81.24137 35.65501,-81.4597 35.42394,-81.53646 35.35634,-81.55898 35.25363,-81.55676 35.17175,-81.06028 35.15055,-81.05879 35.06234,-81.04139 35.04471,-80.97712 35.17286,-80.98337 35.25496,-80.9276 35.25827,-80.8966 35.2325,-80.92431 35.21646,-80.91734 35.17526,-80.97453 35.17225,-81.04086 35.04496,-80.93437 35.10733,-80.78205 34.93556,-80.78688 34.89681,-80.51358 34.9185,-80.45414 35.00243,-80.46656 35.0584,-80.57565 35.26212),(-80.70123 35.34897,-80.73097 35.35184,-80.72492 35.40937,-80.71461 35.42693,-80.68679 35.42327,-80.70123 35.34897)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1806856 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022041-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14839674
title: unimpeded: rlcdm planck_2018_CamSpec

description: cosmological model:rlcdm, dataset:planck_2018_CamSpec
DOI: 10.5281/zenodo.14839675
title: unimpeded: rlcdm planck_2018_CamSpec

description: cosmological model:rlcdm, dataset:planck_2018_CamSpec
DOI: 10.5281/zenodo.13895503
title: CNVSeg: Retinal OCTA dataset from Multiple Devices for Neovascularization Segmentation

description:  
Region_GT
Vessels_GT
Image


Heidelberg
128
128
128


Zeiss
32
32
32


SVision
24
24
24
DOI: 10.5281/zenodo.13895504
title: CNVSeg: Retinal OCTA dataset from Multiple Devices for Neovascularization Segmentation

description:  
Region_GT
Vessels_GT
Image


Heidelberg
128
128
128


Zeiss
32
32
32


SVision
24
24
24
DOI: 10.15468/dl.4bt7fe
title: Occurrence Download

description: A dataset containing 200 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Siraitia grosvenorii (Swingle) C.Jeffrey ex A.M.Lu & Zhi Y.Zhang"
 ]
}

 The dataset includes 200 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022053-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xpddd8
title: Occurrence Download

description: A dataset listing the 68573 species recorded in GBIF matching the query:
{
 "Country" : [
 "is Korea, Republic of"
 ]
}

 The dataset's 68573 records were derived from 1383 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022049-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3c43mj
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "TaxonKey is Eukoenenia Börner, 1901"
 ]
}

 The dataset includes 57 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022055-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2wx8u
title: Occurrence Download

description: A dataset containing 211076 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((157.59031 -32.79169,160.4142 -32.79169,160.4142 -30.19833,157.59031 -30.19833,157.59031 -32.79169))"
 ]
}

 The dataset includes 211076 records from 236 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022046-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vethpc
title: Occurrence Download

description: A dataset containing 1089 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Melidectes belfordi (De Vis, 1890)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1089 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009818-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vac5w6
title: Occurrence Download

description: A dataset containing 2458 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Sporophila bouvreuil (P.L.S.Müller, 1776)"
 ]
}

 The dataset includes 2458 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035890-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76xh66
title: Occurrence Download

description: A dataset containing 2613 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Crypturellus noctivagus (zu Wied-Neuwied, 1820)"
 ]
}

 The dataset includes 2613 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053925-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l1abt9
title: Occurrence Download

description: A dataset containing 866 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Chondrodactylus bibronii (Smith, 1846)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 866 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009830-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f85r59
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dischidia trichostemma Schltr."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035896-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3hhv7e
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clypeaster ravenelii (A.Agassiz, 1869)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 212 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046615-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kgr1wp
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Tonatia bidens (Spix, 1823)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 121 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009838-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujuep9
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dischidia tjidadapensis Bakh.fil."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035845-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqynj9
title: Occurrence Download

description: A dataset containing 6789 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ptilopachus petrosus (J.F.Gmelin, 1789)"
 ]
}

 The dataset includes 6789 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053996-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.