cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8e876r
title: Occurrence Download

description: A dataset containing 592 species occurrences available in GBIF matching the query:
{
 "or" : [
 "Geometry POLYGON((-103.47366 20.62172,-103.47349 20.62172,-103.47349 20.62181,-103.47366 20.62181,-103.47366 20.62172))",
 "Geometry POLYGON((-103.50623 20.59602,-103.46709 20.59602,-103.46709 20.6228,-103.50623 20.6228,-103.50623 20.59602))"
 ]
}

 The dataset includes 592 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071786-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgfkef
title: Occurrence Download

description: A dataset containing 1342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ehretia microphylla Lam.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1342 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053566-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kghukx
title: Occurrence Download

description: A dataset containing 1787820 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Artiodactyla"
 ]
}

 The dataset includes 1787820 records from 1438 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024007-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.04ezak
title: Occurrence Download

description: A dataset containing 44500 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithobates catesbeianus (Shaw, 1802)"
 ]
}

 The dataset includes 44500 records from 192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027603-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mute49
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Algas Marinas registradas en Providencia y Santa Catalina durante la Expedición Seaflower 2019 - Proyecto Colombia BIO"
 ]
}

 The dataset includes 63 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112473-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfb2xs
title: Occurrence Download

description: A dataset containing 109425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "TaxonKey is Liliopsida"
 ]
}

 The dataset includes 109425 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0120327-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6cmv9u
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Psychotria suterella Müll.Arg."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107417-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5u5vv
title: Occurrence Download

description: A dataset listing the 3298657 species recorded in GBIF matching the query:
{ }

 The dataset's 3298657 records were derived from 31685 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071555-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9zgcm
title: Occurrence Download

description: A dataset containing 2895 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Herniaria fruticosa L."
 ]
}

 The dataset includes 2895 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007714-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zp3ea2
title: Occurrence Download

description: A dataset containing 5552 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hormathophylla spinosa (L.) P.Küpfer"
 ]
}

 The dataset includes 5552 records from 202 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007717-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j67c2d
title: Occurrence Download

description: A dataset containing 33687 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyparrhenia hirta (L.) Stapf"
 ]
}

 The dataset includes 33687 records from 331 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007719-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtwqad
title: Occurrence Download

description: A dataset containing 2230 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypericum canariense L."
 ]
}

 The dataset includes 2230 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007720-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fj2vz8
title: Occurrence Download

description: A dataset containing 1099 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypericum empetrifolium Willd."
 ]
}

 The dataset includes 1099 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007736-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxgrs5
title: Occurrence Download

description: A dataset containing 18565 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyssopus officinalis L."
 ]
}

 The dataset includes 18565 records from 458 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007737-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxyry8
title: Occurrence Download

description: A dataset containing 1602 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iberis procumbens Lange"
 ]
}

 The dataset includes 1602 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007739-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6yk756
title: Occurrence Download

description: A dataset containing 534696 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ilex aquifolium L."
 ]
}

 The dataset includes 534696 records from 2162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007740-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csr88x
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material sample, Fossil, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eutrema salsugineum (Pall.) Al-Shehbaz & S.I.Warwick"
 ]
}

 The dataset includes 124 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000582-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5yvq4c
title: Occurrence Download

description: A dataset containing 47750 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lynx lynx (Linnaeus, 1758)",
 "Year 1990-2024"
 ]
}

 The dataset includes 47750 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000583-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9337863
title: mimic_iv_v2.0_icu_procedures_data
DOI: 10.34740/kaggle/ds/5653948
title: mimic_iv_v2.0_icu_diagnosis_icd10_data
DOI: 10.5281/zenodo.10865900
title: Quantum mechanical electronic and geometric parameters for DNA k-mers as features for machine learning

description: With the development of advanced predictive modelling techniques, we are witnessing a steep increase in model development initiatives in genomics that employ high-end machine learning methodologies. Of particular interest are models that predict certain genomic or biological characteristics based solely on DNA sequence information. These models, however, treat the DNA sequence as a mere collection of four, A, T, G and C, letters, thus dismissing the past physico-chemical advancements in science that can enable the use of more intricate information about nucleic acid sequences. Here, we provide a comprehensive database of quantum mechanical and geometric features for all the permutations of 7-meric DNA in their representative B, A and Z conformations. The database is generated by employing the applicable high-cost and time-consuming quantum mechanical methodologies. This can thus make it seamless to associate a wealth of novel molecular features to any DNA sequence, by scanning it with a matching k-meric window and pulling the pre-computed values from our database for further use in modelling. We demonstrate the usefulness of our deposited features through their exclusive use in developing a model for A to C mutation rate constants.

The DNA k-mer quantum mechanical parameters can also be found https://github.com/SahakyanLab/DNAkmerQM, the corresponding research and development code from https://github.com/SahakyanLab/NucleicAcidsQM, and the associated pre-print from https://doi.org/10.1101/2023.01.25.525597.
DOI: 10.5281/zenodo.10865899
title: Quantum mechanical electronic and geometric parameters for DNA k-mers as features for machine learning

description: With the development of advanced predictive modelling techniques, we are witnessing a steep increase in model development initiatives in genomics that employ high-end machine learning methodologies. Of particular interest are models that predict certain genomic or biological characteristics based solely on DNA sequence information. These models, however, treat the DNA sequence as a mere collection of four, A, T, G and C, letters, thus dismissing the past physico-chemical advancements in science that can enable the use of more intricate information about nucleic acid sequences. Here, we provide a comprehensive database of quantum mechanical and geometric features for all the permutations of 7-meric DNA in their representative B, A and Z conformations. The database is generated by employing the applicable high-cost and time-consuming quantum mechanical methodologies. This can thus make it seamless to associate a wealth of novel molecular features to any DNA sequence, by scanning it with a matching k-meric window and pulling the pre-computed values from our database for further use in modelling. We demonstrate the usefulness of our deposited features through their exclusive use in developing a model for A to C mutation rate constants.

The DNA k-mer quantum mechanical parameters can also be found https://github.com/SahakyanLab/DNAkmerQM, the corresponding research and development code from https://github.com/SahakyanLab/NucleicAcidsQM, and the associated pre-print from https://doi.org/10.1101/2023.01.25.525597.
DOI: 10.5281/zenodo.10866166
title: Quantum mechanical electronic and geometric parameters for DNA k-mers as features for machine learning

description: With the development of advanced predictive modelling techniques, we are witnessing a steep increase in model development initiatives in genomics that employ high-end machine learning methodologies. Of particular interest are models that predict certain genomic or biological characteristics based solely on DNA sequence information. These models, however, treat the DNA sequence as a mere collection of four, A, T, G and C, letters, thus dismissing the past physico-chemical advancements in science that can enable the use of more intricate information about nucleic acid sequences. Here, we provide a comprehensive database of quantum mechanical and geometric features for all the permutations of 7-meric DNA in their representative B, A and Z conformations. The database is generated by employing the applicable high-cost and time-consuming quantum mechanical methodologies. This can thus make it seamless to associate a wealth of novel molecular features to any DNA sequence, by scanning it with a matching k-meric window and pulling the pre-computed values from our database for further use in modelling. We demonstrate the usefulness of our deposited features through their exclusive use in developing a model for A to C mutation rate constants.

The DNA k-mer quantum mechanical parameters can also be found https://github.com/SahakyanLab/DNAkmerQM, the corresponding research and development code from https://github.com/SahakyanLab/NucleicAcidsQM, and the associated pre-print from https://doi.org/10.1101/2023.01.25.525597.
DOI: 10.15468/dl.hj7xur
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Milicia excelsa (Welw.) C.C.Berg",
 "Year 2000-2024"
 ]
}

 The dataset includes 166 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000584-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9337927
title: mimic_iv_v2.0_icu_chart_events_data
DOI: 10.15468/dl.xkwjgs
title: Occurrence Download

description: A dataset containing 123645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Menispermaceae"
 ]
}

 The dataset includes 123645 records from 800 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000585-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13729347
title: Olive_FMBN

description: This repository hosts data and scripts created by me (Eugenio Parente) for the "METAOLIVE: meta-omic approaches for traditional table olive fermentation" project (more [here](http://web.unibas.it/parente/?page_id=1945)). This project is co-funded by Ministero dell’Università e della Ricerca PRIN 2022, proposal 2022NN28ZZ, and received funding from the European Union Next-GenerationEU - PIANO NAZIONALE DI RIPRESA E RESILIENZA (PNRR).* olive_FMBN contains a script and data with phyloseq objects (and their metadata; including an extra_metadata file with further metadaa for bacgterial samples) on olive fermentations extracted from [FoodMicrobionet v5](https://github.com/ep142/FoodMicrobionet). Data for bacteria have been used in a poster presented at the [Food Systems Microbiomes](https://foodsystemsmicrobiomes.org) conference and at the AJLAB meeting, on 9/8/2024. 

Please cite as:Parente E., Ricciardi A., Hidalgo M. 2024. PS2-S9-PP01 The bacterial microbiota of table olives: A metastudy. in: Proceedings of the Food Systems Microbiomes conference, p. 138 Turin, 14-17/5/2024
DOI: 10.15468/dl.zhz5sp
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron amandum Cowan"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000586-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w7dbmm
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2009",
 "TaxonKey is Ambystoma mexicanum (Shaw & Nodder, 1798)"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000587-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jtdrtn
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2019",
 "TaxonKey is Ambystoma mexicanum (Shaw & Nodder, 1798)"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000589-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26962846
title: <b>Genetic study of Extended Spectrum Beta-lactamase genes, </b><b><i>bla-TEM, blaOXA‑10 , blaSHV</i></b><b> and </b><b><i>per-1</i></b><b> genes in </b><b><i>Pseudomonas aeruginosa </i></b><b>from Hospital-Acquired Infections.</b>

description: <b>Genetic study of Extended Spectrum Beta-lactamase genes, </b><b><i>bla-TEM, blaOXA‑10 , blaSHV</i></b><b> and </b><b><i>per-1</i></b><b> genes in </b><b><i>Pseudomonas aeruginosa </i></b><b>from hospital-Acquired Infections.</b>
DOI: 10.6084/m9.figshare.26962846.v1
title: <b>Genetic study of Extended Spectrum Beta-lactamase genes, </b><b><i>bla-TEM, blaOXA‑10 , blaSHV</i></b><b> and </b><b><i>per-1</i></b><b> genes in </b><b><i>Pseudomonas aeruginosa </i></b><b>from Hospital-Acquired Infections.</b>

description: <b>Genetic study of Extended Spectrum Beta-lactamase genes, </b><b><i>bla-TEM, blaOXA‑10 , blaSHV</i></b><b> and </b><b><i>per-1</i></b><b> genes in </b><b><i>Pseudomonas aeruginosa </i></b><b>from hospital-Acquired Infections.</b>
DOI: 10.15468/dl.5qq5w6
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2020",
 "Year is less than or equal to 2024",
 "TaxonKey is Ambystoma mexicanum (Shaw & Nodder, 1798)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000590-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w89fpg
title: Occurrence Download

description: A dataset containing 368503 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Avahi Jourdan, 1834, Sciurocheirus alleni (Waterhouse, 1838), Distoechurus pennatus Peters, 1874, Caluromys lanatus (Olfers, 1818), Sphiggurus mexicanus (Kerr, 1792), Anomalurus beecrofti Fraser, 1853, Ptilocercus lowii Gray, 1848, Sphiggurus insidiosus (Olfers, 1818), Trichys fasciculata (Shaw, 1801), Cheirogaleus medius É.Geoffroy Saint-Hilaire, 1812, Phalanger gymnotis Peters & Doria, 1875, Strigocuscus pelengensis (Tate, 1945), Anomalurus derbianus (Gray, 1842), Anomalurus pusillus Thomas, 1887, Idiurus zenkeri Matschie, 1894, Dactylopsila trivirgata Gray, 1858, Petaurus breviceps Waterhouse, 1838, Petaurus gracilis (de Vis, 1883), Petaurus norfolcensis (Kerr, 1792), Petropseudes dahli (Collett, 1895), Pseudochirops archeri (Collett, 1884), Burramys parvus Broom, 1896, Cercartetus caudatus (Milne-Edwards, 1877), Cercartetus concinnus (Gould, 1845), Cercartetus lepidus (Thomas, 1888), Cercartetus nanus (Desmarest, 1818), Phalanger orientalis (Pallas, 1766), Trichosurus arnhemensis Collett, 1897, Aotus nancymaae Hershkovitz, 1983, Aotus nigriceps Dollman, 1909, Aotus miconax Thomas, 1927, Aotus lemurinus I.Geoffroy Saint-Hilaire, 1843, Aotus trivirgatus (Humboldt, 1811), Aotus vociferans (Spix, 1823), Daubentonia madagascariensis (Gmelin, 1788), Octodontomys gliroides (Gervais & d'Orbigny, 1844), Atherurus macrourus (Linnaeus, 1758), Eulemur mongoz (Linnaeus, 1766), Loris tardigradus (Linnaeus, 1758), Nycticebus coucang (Boddaert, 1785), Mysateles prehensilis (Poeppig, 1824), Chaetomys subspinosus (Olfers, 1818), Coendou prehensilis (Linnaeus, 1758), Graphiurus murinus (Desmarest, 1822), Glis glis (Linnaeus, 1766), Nandinia binotata (Gray, 1830), Bassariscus sumichrasti (Saussure, 1860), Bassaricyon alleni Thomas, 1880, Bassaricyon gabbii J.A.Allen, 1876, Potos flavus (Schreber, 1774), Arctictis binturong (Raffles, 1821), Paguma larvata (C.E.H.Smith, 1827), Paradoxurus hermaphroditus (Pallas, 1777), Bradypus variegatus Schinz, 1825, Choloepus didactylus (Linnaeus, 1758), Glaucomys volans (Linnaeus, 1758), Marmosa robinsoni Bangs, 1898, Avahi laniger (Gmelin, 1788), Hylomyscus aeta (Thomas, 1911), Hylomyscus parvus Brosset, Dubost & Heim de Balsac, 1965, Hylomyscus stella (Thomas, 1911), Melomys cervinipes (Gould, 1852), Stochomys longicaudatus (Tullberg, 1893), Brachytarsomys albicauda Günther, 1875, Eliurus minor Forsyth Major, 1896, Myodes glareolus (Schreber, 1780), Microcebus myoxinus Peters, 1852, Eulemur rufus (Audebert, 1799), Phyllomys thomasi (Ihering, 1871), Trichosurus caninus (Ogilby, 1835), Perodicticus potto (Müller, 1766), Galeopterus variegatus (Audebert, 1799), Daubentonia É.Geoffroy Saint-Hilaire, 1795)"
 ]
}

 The dataset includes 368503 records from 1568 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000588-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxqkb3
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trogoderma Dejean, 1821",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0315257-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.59pnxu
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tylocarcinus meijensis Dai, Cai & Yang, 1994"
 ]
}

 The dataset includes 42 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134961-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.