cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11750184
title: Brazilian Legal Proceedings (Conference)

description: Our data is composed by two datasets: a dataset of 3*10^6 unlabelled motions (mov_treino.txt) and a dataset containing legal proceedings (mov.txt), each with an individual and variable number of motions, but which have been labeled by law experts (tags.txt). They were labeled in 3 classes: arquivado (archived), ativo (active), suspenso (suspended). These datasets are random samples from the first (São Paulo) ans third (Rio de Janeiro) biggest State Courts. State Courts handle the most variable types of cases throughout the Courts in Brazil, and are responsible for 80% of the total amount of lawsuits. Therefore, these datasets are representative of a very significative portion of the variable use of language and expressions in Courts vocabulary.
DOI: 10.6084/m9.figshare.11750109
title: <i>De novo</i> Expression of β-amylase2 (<i>Bmy2</i>) in Barley Grains During Micromalting

description: β-Amylase is important to the malting and brewing industry because it is one of four main enzymes involved in fermentable sugar production during mashing. There are two functional barley β-amylases encoded by the <i>Bmy1</i> and <i>Bmy2</i> genes. Mashing is commonly performed at high temperatures and β-amylase1 (Bmy1) is vulnerable to thermal inactivation at these temperatures. Unlike Bmy1, Bmy2 is not stored at useful levels in the mature grain but <i>Bmy2</i> encodes a more thermostable β-amylase. Expression of β-amylase is not thought to occur during malting but, interestingly, <i>de novo</i> expression of <i>Bmy2</i> is seen in other Triticeae tribe members during germination. Therefore, this research was conducted to determine if barley <i>Bmy2</i> is <i>de novo</i> expressed during micromalting. <i>De novo</i> expression of <i>Bmy2</i> is observed in both a two- and six-row malting cultivar (Conrad and Legacy, respectively). Legacy <i>Bmy2</i> transcript levels significantly increased (40-fold) between 0 and 4 Days of Germination (DoG) and Conrad <i>Bmy2</i> transcript levels significantly increased (20-fold) between 0 and 3 DoG. Legacy had significantly (1.9-fold) more <i>Bmy2</i> transcript levels than Conrad by the end of micromalting. The β-amylase activity and protein immunoblots corroborated the gene expression data thus reliably demonstrating the <i>de novo</i> expression of <i>Bmy2</i> during micromalting.
DOI: 10.6084/m9.figshare.11750109.v1
title: <i>De novo</i> Expression of β-amylase2 (<i>Bmy2</i>) in Barley Grains During Micromalting

description: β-Amylase is important to the malting and brewing industry because it is one of four main enzymes involved in fermentable sugar production during mashing. There are two functional barley β-amylases encoded by the <i>Bmy1</i> and <i>Bmy2</i> genes. Mashing is commonly performed at high temperatures and β-amylase1 (Bmy1) is vulnerable to thermal inactivation at these temperatures. Unlike Bmy1, Bmy2 is not stored at useful levels in the mature grain but <i>Bmy2</i> encodes a more thermostable β-amylase. Expression of β-amylase is not thought to occur during malting but, interestingly, <i>de novo</i> expression of <i>Bmy2</i> is seen in other Triticeae tribe members during germination. Therefore, this research was conducted to determine if barley <i>Bmy2</i> is <i>de novo</i> expressed during micromalting. <i>De novo</i> expression of <i>Bmy2</i> is observed in both a two- and six-row malting cultivar (Conrad and Legacy, respectively). Legacy <i>Bmy2</i> transcript levels significantly increased (40-fold) between 0 and 4 Days of Germination (DoG) and Conrad <i>Bmy2</i> transcript levels significantly increased (20-fold) between 0 and 3 DoG. Legacy had significantly (1.9-fold) more <i>Bmy2</i> transcript levels than Conrad by the end of micromalting. The β-amylase activity and protein immunoblots corroborated the gene expression data thus reliably demonstrating the <i>de novo</i> expression of <i>Bmy2</i> during micromalting.
DOI: 10.6084/m9.figshare.11750076
title: Sample_species_map.txt

description: File showing assignment of samples to species.
DOI: 10.6084/m9.figshare.11750076.v1
title: Sample_species_map.txt

description: File showing assignment of samples to species.
DOI: 10.6084/m9.figshare.11750061
title: Brazilian Legal Proceedings

description: Our data is composed by two datasets: a dataset of 3*10^6 unlabelled motions (mov_treino.txt) and a dataset containing legal proceedings (mov.txt), each with an individual and variable number of motions, but which have been labeled by law experts (tags.txt). They were labeled in 3 classes: arquivado (archived), ativo (active), suspenso (suspended). These datasets are random samples from the first (São Paulo) ans third (Rio de Janeiro) biggest State Courts. State Courts handle the most variable types of cases throughout the Courts in Brazil, and are responsible for 80% of the total amount of lawsuits. Therefore, these datasets are representative of a very significative portion of the variable use of language and expressions in Courts vocabulary.
DOI: 10.6084/m9.figshare.11749965
title: wild_lentil_2

description: Images of wild lentil 2 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11749965.v1
title: wild_lentil_2

description: Images of wild lentil 2 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11749959
title: sex_linked.406.rooted.gene.trees

description: Rooted gene trees for the CDS loci on the Z chromosome of Heliconius and Eudies butterflies.
DOI: 10.6084/m9.figshare.11749959.v1
title: sex_linked.406.rooted.gene.trees

description: Rooted gene trees for the CDS loci on the Z chromosome of Heliconius and Eudies butterflies.
DOI: 10.6084/m9.figshare.11749941
title: Color pattern loci alignments.zip

description: 20kbp windows across the scaffolds containing the Heliconius color pattern loci (B/D, Yb, Sd, Ro)
DOI: 10.6084/m9.figshare.11749941.v1
title: Color pattern loci alignments.zip

description: 20kbp windows across the scaffolds containing the Heliconius color pattern loci (B/D, Yb, Sd, Ro)
DOI: 10.6084/m9.figshare.11749851
title: wild_lentil_1

description: Images of wild lentil 1 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11749851.v1
title: wild_lentil_1

description: Images of wild lentil 1 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11749836
title: cultivated_lentil_7

description: Images of cultivated lentil 7 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11749824
title: GPS coordinated (WGS) of 50 soil samples

description: <b>GPS coordinated (WGS) of 50 soil samples </b>
DOI: 10.6084/m9.figshare.11749836.v1
title: cultivated_lentil_7

description: Images of cultivated lentil 7 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11749821
title: Statistics for CEI and QC divisions

description: We combined the division data from the SHR:SHR-GFP and SCR:SCR-GFP lines to perform the statistics.
DOI: 10.6084/m9.figshare.11749821.v1
title: Statistics for CEI and QC divisions

description: We combined the division data from the SHR:SHR-GFP and SCR:SCR-GFP lines to perform the statistics.
DOI: 10.6084/m9.figshare.11749824.v2
title: GPS coordinated (WGS) of 50 soil samples

description: <b>GPS coordinated (WGS) of 50 soil samples </b>
DOI: 10.6084/m9.figshare.11749824.v1
title: Untitled Item

description: <b>GPS coordinated (WGS) of 50 soil samples </b>
DOI: 10.6084/m9.figshare.11749815
title: Positive expression of <i>PAX7</i> indicates poor prognosis of pediatric and adolescent AML patients

description: <b>Objective</b>: Therapeutic advances based on risk stratification and implementation of excellent supportive care measures have significantly improved outcomes for childhood acute myeloid leukemia (AML) over the past 30 years. However, approximately half of all childhood AML cases relapse. Therefore, precise risk stratification is needed for predicting relapse potential. <b>Methods</b>: RNA-seq data of TARGET-AML and corresponding clinical information of pediatric and adolescent AML cases were downloaded from The Cancer Genome Atlas. Clinical information of 156 patients with gene expression data was extracted. The effects of <i>PAX7</i> expression profiles on overall survival (OS) and event-free survival (EFS) were analyzed. <b>Results</b>: Positive expression of <i>PAX7</i> indicated shorter OS and EFS, especially in patients older than 14 years. Furthermore, positive <i>PAX7</i> expression also predicted shorter OS and EFS in intermediate- and low-risk group patients, compared to patients with negative <i>PAX7</i> expression. In addition, patients who have received allogenic hematopoietic stem cell transplantation (allo-HSCT) in the first complete remission had better outcome than those who did not receive HSCT. <b>Conclusions</b>: Positive <i>PAX7</i> expression in pediatric and adolescent AML patients indicates a poor outcome. Hence, the detection of <i>PAX7</i> expression profiles is helpful for further stratification of intermediate- and low-risk groups.
DOI: 10.6084/m9.figshare.11749803
title: cultivated_lentil_6

description: Images of cultivated lentil 6 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11749815.v1
title: Positive expression of <i>PAX7</i> indicates poor prognosis of pediatric and adolescent AML patients

description: <b>Objective</b>: Therapeutic advances based on risk stratification and implementation of excellent supportive care measures have significantly improved outcomes for childhood acute myeloid leukemia (AML) over the past 30 years. However, approximately half of all childhood AML cases relapse. Therefore, precise risk stratification is needed for predicting relapse potential. <b>Methods</b>: RNA-seq data of TARGET-AML and corresponding clinical information of pediatric and adolescent AML cases were downloaded from The Cancer Genome Atlas. Clinical information of 156 patients with gene expression data was extracted. The effects of <i>PAX7</i> expression profiles on overall survival (OS) and event-free survival (EFS) were analyzed. <b>Results</b>: Positive expression of <i>PAX7</i> indicated shorter OS and EFS, especially in patients older than 14 years. Furthermore, positive <i>PAX7</i> expression also predicted shorter OS and EFS in intermediate- and low-risk group patients, compared to patients with negative <i>PAX7</i> expression. In addition, patients who have received allogenic hematopoietic stem cell transplantation (allo-HSCT) in the first complete remission had better outcome than those who did not receive HSCT. <b>Conclusions</b>: Positive <i>PAX7</i> expression in pediatric and adolescent AML patients indicates a poor outcome. Hence, the detection of <i>PAX7</i> expression profiles is helpful for further stratification of intermediate- and low-risk groups.
DOI: 10.6084/m9.figshare.11749803.v1
title: cultivated_lentil_6

description: Images of cultivated lentil 6 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11749791
title: cultivated_lentil_5

description: Images of cultivated lentil 5 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11749791.v1
title: cultivated_lentil_5

description: Images of cultivated lentil 5 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11749788
title: cultivated_lentil_4

description: Images of cultivated lentil 4 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11749788.v1
title: cultivated_lentil_4

description: placeholder<br>
DOI: 10.6084/m9.figshare.11749281
title: Heliconiini.mitochondrial.alignment.phy

description: Alignment of mitochondrial sequences from Heliconiini butterflies. Recovered by mapping Illumina short reads to H. melpomene reference genome.
DOI: 10.6084/m9.figshare.11749281.v1
title: Heliconiini.mitochondrial.alignment.phy

description: Alignment of mitochondrial sequences from Heliconiini butterflies. Recovered by mapping Illumina short reads to H. melpomene reference genome.
DOI: 10.6084/m9.figshare.11747925
title: autosomal.exonic.filtered.SNPs.phy

description: High-quality SNPs from the orthologous exons of Heliconius and Eueides butterflies.
DOI: 10.6084/m9.figshare.11747394
title: Boletín del Bibliotecario. 1ra Ed. Año 2020

description: Boletín del Bibliotecario, creado por la Biblioteca de la Universidad de Ciencias Médicas de la Provincia Cienfuegos. Correspondiente a la publicación bimestral de Febrero de 2020.<br>
DOI: 10.6084/m9.figshare.11747925.v2
title: autosomal.exonic.filtered.SNPs.phy

description: High-quality SNPs from the orthologous exons of Heliconius and Eueides butterflies.
DOI: 10.6084/m9.figshare.11747925.v1
title: autosomal.exonic.filtered.SNPs.phy

description: High-quality SNPs from the orthologous exons of Heliconius and Eueides butterflies.
DOI: 10.6084/m9.figshare.11747394.v2
title: Boletín del Bibliotecario. 1ra Ed. Año 2020

description: Boletín del Bibliotecario, creado por la Biblioteca de la Universidad de Ciencias Médicas de la Provincia Cienfuegos. Correspondiente a la publicación bimestral de Febrero de 2020.<br>
DOI: 10.6084/m9.figshare.11747394.v1
title: Boletín del Bibliotecario. 1ra Ed. Año 2020

description: Boletín del Bibliotecario, creado por la Biblioteca de la Universidad de Ciencias Médicas de la Provincia Cienfuegos. Correspondiente a la publicación bimestral de Febrero de 2020.<br>
DOI: 10.6084/m9.figshare.11746200
title: cultivated_lentil_3

description: Images of cultivated lentil 3 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11746200.v1
title: cultivated_lentil_3

description: Images of cultivated lentil 3 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11745921
title: cultivated_lentil_1

description: Images of cultivated lentil 1 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11746029
title: cultivated_lentil_2

description: Images of cultivated lentil 2 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)This data is a subset of data used to create boxplots in the BELT paper.<br>
DOI: 10.6084/m9.figshare.11745921.v1
title: cultivated_lentil_1

description: Subset of images of lentil cultivar 1 used to create a boxplot in BELT / phenoSEED paper<br>
DOI: 10.6084/m9.figshare.11746029.v1
title: cultivated_lentil_2

description: images of cultivated lentil 2 captured at the University of Saskatchewan on the BELT platform and ready to be analyzed with phenoSEED (https://gitlab.com/usask-speclab/phenoseed)<br>
DOI: 10.6084/m9.figshare.11745867
title: Over-represented GO terms in predicted secreted proteins M. enterolobii (genome V1, INRA/JKI)

description: List of significantly over-represented GO terms in the predicted secreted proteins of M. enterolobii.<br>We used a gene set enrichment analysis (GSEA) to identify significantly overrepresented gene ontology (GO) terms in the set of predicted secreted proteins in comparison to the rest of the proteins. We considered as significantly overrepresented, the GO terms that returned a false discovery rate (FDR) value &lt;0.05 in one-tailed Fisher’s exact test. We identified 49 overrepresented GO ‘slim’ terms in the predicted secreted proteins
DOI: 10.6084/m9.figshare.11745867.v1
title: Over-represented GO terms in predicted secreted proteins M. enterolobii (genome V1, INRA/JKI)

description: List of significantly over-represented GO terms in the predicted secreted proteins of M. enterolobii.<br>We used a gene set enrichment analysis (GSEA) to identify significantly overrepresented gene ontology (GO) terms in the set of predicted secreted proteins in comparison to the rest of the proteins. We considered as significantly overrepresented, the GO terms that returned a false discovery rate (FDR) value &lt;0.05 in one-tailed Fisher’s exact test. We identified 49 overrepresented GO ‘slim’ terms in the predicted secreted proteins
DOI: 10.6084/m9.figshare.11745495
title: Functional annotation of predicted proteins in M. enterolobii (genome V1, INRA/JKI)

description: Excel file summarizing the functional annotation of predicted protein-coding genes in M. enterolobii.We used PfamScan on the whole set of M. enterolobii proteins against the Pfam-A v32 library of HMM profiles to identify conserved protein domains. We used the Pfam annotation as well as the set of predicted proteins as an input to BLAST2GO pro v.1.12.11 to assign standard and ‘slim’ gene ontology terms according to the presence of Pfam domains, to BLASTp homology searches against the NCBI’s nr database and to Interproscan annotation performed internally in BLAST2GO.
DOI: 10.6084/m9.figshare.11745495.v1
title: Functional annotation of predicted proteins in M. enterolobii (genome V1, INRA/JKI)

description: Excel file summarizing the functional annotation of predicted protein-coding genes in M. enterolobii.We used PfamScan on the whole set of M. enterolobii proteins against the Pfam-A v32 library of HMM profiles to identify conserved protein domains. We used the Pfam annotation as well as the set of predicted proteins as an input to BLAST2GO pro v.1.12.11 to assign standard and ‘slim’ gene ontology terms according to the presence of Pfam domains, to BLASTp homology searches against the NCBI’s nr database and to Interproscan annotation performed internally in BLAST2GO.
DOI: 10.6084/m9.figshare.11744568
title: PNSSV

description: Data from simulation PNSSV from Almeida & Nemmen 2020
DOI: 10.6084/m9.figshare.11744568.v1
title: PNSSV

description: Data from simulation PNSSV from Almeida & Nemmen 2020
DOI: 10.6084/m9.figshare.11744502
title: test2.bed

description: smth
DOI: 10.6084/m9.figshare.11744502.v1
title: test2.bed

description: smth
DOI: 10.6084/m9.figshare.11744484
title: Model

description: Model
DOI: 10.6084/m9.figshare.11744484.v2
title: Model

description: Model
DOI: 10.6084/m9.figshare.11744433
title: test.bed

description: bedfile
DOI: 10.6084/m9.figshare.11744484.v1
title: Model

description: Model
DOI: 10.6084/m9.figshare.11744358
title: README

description: This is a subset of the data used in the paper describing BELT and phenoSEED (https://gitlab.com/usask-speclab/phenoseed). These files once unzipped and placed within a directory can be run with phenoseed with the option -i /path/to/top_level/. This will create a csv file with records for each image file<br>
DOI: 10.6084/m9.figshare.11744433.v1
title: test.bed

description: bedfile
DOI: 10.6084/m9.figshare.11744358.v1
title: README

description: This is a subset of the data used in the paper describing BELT and phenoSEED (https://gitlab.com/usask-speclab/phenoseed). These files once unzipped and placed within a directory can be run with phenoseed with the option -i /path/to/top_level/. This will create a csv file with records for each image file<br>
DOI: 10.6084/m9.figshare.11744292
title: Predicted coding sequences (CDS) in M. enterolobii (genome V1, INRA/JKI)

description: Fasta file of the coding sequences (CDS) in the genome of Meloidogyne enterolobii.Genes predcitions were done with Eugene-EP<br>
DOI: 10.6084/m9.figshare.11744304
title: Meloidogyne enterolobii genome assembly (V1, INRA/JKI)

description: Fasta file of the genome assembly of Meloidogyne enterolobii.The genome was assembled using CANU and errot-corrected with Pilon. Contamination was assessed using coverage information from illumina short reads and Blobology tools. Contaminant contigs were removed from this final assembly.<br><br>
DOI: 10.6084/m9.figshare.11744304.v1
title: Meloidogyne enterolobii genome assembly (V1, INRA/JKI)

description: Fasta file of the genome assembly of Meloidogyne enterolobii.The genome was assembled using CANU and errot-corrected with Pilon. Contamination was assessed using coverage information from illumina short reads and Blobology tools. Contaminant contigs were removed from this final assembly.<br><br>
DOI: 10.6084/m9.figshare.11744292.v2
title: Predicted coding sequences (CDS) in M. enterolobii (genome V1, INRA/JKI)

description: Fasta file of the coding sequences (CDS) in the genome of Meloidogyne enterolobii.Genes predcitions were done with Eugene-EP<br>
DOI: 10.6084/m9.figshare.11744268
title: Data for "A snapshot of MeSH: Exploring the ontologies for drug repositioning"

description: <b>SNIPE.triplet.gz:</b>The file shows the similarity between two elements by pairing them up one by one. Every line consists of three:Column 1 are DrugBank idsColumn 2 are MedGen IdsColumn 3 contains the value representing the similarity between the elements in column 1 and column 2<br><b>DIR</b>A database of drug-disease pairs whose similarity is in the top 10%. Each entry contains 5 columns: Disease, Drug, Similarity score, identifiers for the disease genes followed by those identifiers associated with the Drug.<br><b>drugbank2MeSH_FDAAproved:</b>MeSH annotations for FDA approved drugs in DrugBank.<br>disease_to_pubmed.tsv.gzMedGen disease to pubmed mapping.<br>
DOI: 10.6084/m9.figshare.11744292.v1
title: Predicted coding sequences (CDS) in M. enterolobii (genome V1, INRA/JKI)

description: Fasta file of the coding sequences (CDS) in the genome of Meloidogyne enterolobii.Genes predcitions were done with Eugene-EP<br>
DOI: 10.6084/m9.figshare.11744238
title: GFF3 of the EUGENE gene prediction of M. enterolobii (genome V1, INRA/JKI)

description: GFF3 file of the gene prediction in the genome of Meloidogyne enterolobii.The gene prediction has been done with EUGENE-EP<br>