cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15637906
title: EsCorpiusBias: Contextual Annotation and Transformer-Based Detection of Racism and Sexism in Spanish Dialogues

description: The rise of online communication platforms has significantly increased exposure to harmful discourse, presenting ongoing challenges for digital moderation and user well-being. This paper introduces the EsCorpiusBias corpus, designed to enhance automated detection of sexism and racism within Spanish-language online dialogues, specifically sourced from the Mediavida forum. By means of a systematic, context-sensitive annotation protocol, approximately 1,000 three-turn dialogue units per bias category has been annotated, ensuring nuanced recognition of pragmatic and conversational subtleties. The annotation guidelines have been meticulously developed, covering explicit and implicit manifestations of sexism and racism, and annotations were performed using the Prodigy tool, resulting in moderate to substantial inter-annotator agreement (Cohen's Kappa: 0.55 for sexism, 0.79 for racism). Models including Logistic Regression, SpaCy's baseline n-gram bag-of-words model, and transformer-based BETO were trained and evaluated, demonstrating that contextualized transformer-based approaches significantly outperform baseline and general-purpose models. Additionally, lexical overlap analyses indicated a strong reliance on explicit lexical indicators, highlighting limitations in handling implicit biases. This research underscores the importance of contextually grounded, domain-specific fine-tuning for effective automated detection of toxicity, providing robust resources and methodologies to foster socially responsible NLP systems within Spanish-speaking online communities.
description: Acknowledgments: This dataset is a result of the project CONVERSA (TED2021-132470B-I00) funded by MCIN/AEI/10.13039/501100011033 and by "European Union NextGenerationEU/PRTR".
DOI: 10.5281/zenodo.16529721
title: EsCorpiusBias: Contextual Annotation and Transformer-Based Detection of Racism and Sexism in Spanish Dialogues

description: The rise of online communication platforms has significantly increased exposure to harmful discourse, presenting ongoing challenges for digital moderation and user well-being. This paper introduces the EsCorpiusBias corpus, designed to enhance automated detection of sexism and racism within Spanish-language online dialogues, specifically sourced from the Mediavida forum. By means of a systematic, context-sensitive annotation protocol, approximately 1,000 three-turn dialogue units per bias category has been annotated, ensuring nuanced recognition of pragmatic and conversational subtleties. The annotation guidelines have been meticulously developed, covering explicit and implicit manifestations of sexism and racism, and annotations were performed using the Prodigy tool, resulting in moderate to substantial inter-annotator agreement (Cohen's Kappa: 0.55 for sexism, 0.79 for racism). Models including Logistic Regression, SpaCy's baseline n-gram bag-of-words model, and transformer-based BETO were trained and evaluated, demonstrating that contextualized transformer-based approaches significantly outperform baseline and general-purpose models. Additionally, lexical overlap analyses indicated a strong reliance on explicit lexical indicators, highlighting limitations in handling implicit biases. This research underscores the importance of contextually grounded, domain-specific fine-tuning for effective automated detection of toxicity, providing robust resources and methodologies to foster socially responsible NLP systems within Spanish-speaking online communities.
description: Acknowledgments: This dataset is a result of the project CONVERSA (TED2021-132470B-I00) funded by MCIN/AEI/10.13039/501100011033 and by "European Union NextGenerationEU/PRTR".
DOI: 10.34740/kaggle/dsv/12599105
title: Full TMDB Movies Dataset 2024 (1M Movies)
DOI: 10.15468/dl.rczw5f
title: Occurrence Download

description: A dataset containing 6860 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pygoscelis papua",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 10",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 6860 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060314-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xeat4x
title: Occurrence Download

description: A dataset containing 62690 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erinaceus europaeus",
 "MediaType is Image"
 ]
}

 The dataset includes 62690 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060277-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8sffg4
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paratrechina longicornis",
 "Country is Sri Lanka",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060313-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxfpyr
title: Occurrence Download

description: A dataset containing 25351113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Occurrence evidence)",
 "Country is one of (Hong Kong, Macao, Chinese Taipei, China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 25351113 records from 292 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060271-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yx9pb9
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pilosella aurantiaca",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 198 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060319-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.euggtd
title: Occurrence Download

description: A dataset containing 9896 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lutra lutra",
 "MediaType is Image"
 ]
}

 The dataset includes 9896 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060316-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smuk86
title: Occurrence Download

description: A dataset containing 8770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pilosella aurantiaca",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8770 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060318-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29528741
title: <b>TNMplot.com – Tumor, Normal, and Metastatic gene expression analysis</b>

description: <b>TNMplot.com</b> is a user-friendly web platform for comparing gene expression levels across normal, tumor, and metastatic tissues in 22 cancer types using RNA-seq and gene chip datasets. The database integrates 56,938 samples from GEO, GTEx, TCGA, and TARGET, enabling rapid visualization of differential expression, correlation analysis, stage comparisons, and functional enrichment.<b>Key features:</b><br>• Gene expression comparison across tissue types and disease stages<br>• Pan-cancer analysis with downloadable high-resolution plots<br>• Coverage of 22 tissue types, including breast, colon, lung, liver, ovary, prostate, renal, and stomachDesigned for rapid biomarker exploration, <b>TNMplot </b>supports hypothesis generation and preclinical validation in oncology research.
DOI: 10.6084/m9.figshare.29528741.v2
title: <b>TNMplot.com – Tumor, Normal, and Metastatic gene expression analysis</b>

description: <b>TNMplot.com</b> is a user-friendly web platform for comparing gene expression levels across normal, tumor, and metastatic tissues in 22 cancer types using RNA-seq and gene chip datasets. The database integrates 56,938 samples from GEO, GTEx, TCGA, and TARGET, enabling rapid visualization of differential expression, correlation analysis, stage comparisons, and functional enrichment.<b>Key features:</b><br>• Gene expression comparison across tissue types and disease stages<br>• Pan-cancer analysis with downloadable high-resolution plots<br>• Coverage of 22 tissue types, including breast, colon, lung, liver, ovary, prostate, renal, and stomachDesigned for rapid biomarker exploration, <b>TNMplot </b>supports hypothesis generation and preclinical validation in oncology research.
DOI: 10.6084/m9.figshare.29528741.v1
title: https://tnmplot.com/analysis/

description: <b>TNMplot.com</b> is a free, interactive web tool for comparing gene expression in normal, tumor, and metastatic tissues across over 56,900 samples (TCGA, GTEx, GEO). It supports pan-cancer and tissue-specific analysis, offering boxplots, violin plots, sensitivity–specificity curves, and stage-specific comparisons.<b>Key features:</b>Single-gene or multi-gene analysis, correlation and signature modulesFunctional enrichment (GO/KEGG) and Targetgram for potential therapy targetsDownloadable, publication-ready plots with robust statisticsDeveloped at Semmelweis University, it helps validate biomarkers and explore transcriptomic differences in cancer research.
DOI: 10.15468/dl.mjczry
title: Occurrence Download

description: A dataset containing 2068 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Material citation, Specimen, Occurrence evidence, Living Specimen)",
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cantao"
 ]
}

 The dataset includes 2068 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060320-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kv72u3
title: Occurrence Download

description: A dataset containing 770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Geokichla guttata"
 ]
}

 The dataset includes 770 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060321-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15608974
title: Supporting Material to Cross-subgenus hybridization between Leishmania and Sauroleishmania informs on parasite genomic compatibility and transcriptomic adaptation

description: Supporting Material to Cross-subgenus hybridization between Leishmania and Sauroleishmania informs on parasite genomic compatibility and transcriptomic adaptation (https://www.biorxiv.org/content/10.1101/2025.03.25.645178v1)

 

The file counts_on_hybrid.tsv contains the raw counts on the genes of the hybrid reference (concatenation of L.Tarentolae and L.infantum).

The file normed_counts_on_hybrid.tsv contains the normalised counts on the genes of the hybrid reference (concatenation of L.Tarentolae and L.infantum).

The files tarinf.fa and tarinf.gff are the reference and annotation of the hybrid (concatenation of GCA_900500625.2 and GCA_009731335.1) used in the DNA and RNA-seq analysis.

The file counts_on_hybrid_dna.tsv contains the raw counts on the genes of the hybrid reference (concatenation of L.Tarentolae and L.infantum) on the genomic data set.

The file Orthogroups_cleaned_and_gp63.tsv contains the list of orthogroups with L.infantum and L.tarentolae gene lists for each orthogroups that was kept (coherence in chromosome inheritance. e.g. a group with genes on different chromosome in L.Tarentolae and L.infantum was removed). GP63 genes were therefore removed because most L.tar are on small contigs .We put back an artifical orthogroup (OG099999) with all L.infatum and L.tarentolae found in chromosome 10. 

There are also 3 PDF documents:



genes_coordinates_individual_chromosomes.pdf  contains the concatenation of 36 plots showing the distribution of the genes along the chromosome. There contain 5 rows. From top to bottom:  (1) localisation of all genes, (2) localisation of genes with zscore>2, (3) localisation of up genes (large RNA) with zscore>2  (4) localisation of down genes (low RNA)  with zscore >2 , and (5) directons (stretch of genes in + or - directions).

go_individual_chromosomes.pdf contains the concatenation of 36 GO enrichments made for each chromosome using genes that have a different ratio of RNA and DNA levels. 

go_individual_chromosomes_z2.pdf contains the concatenation of 36 GO enrichments made for each chromosome using genes that have a different ratio of RNA and DNA levels with z>2. 


The file genes_coordinates_one_panel.png contains is a summary of the PDF file genes_coordinates_individual_chromosomes where we put all plots in one panel (removing x and y labels for space). 

The inter_gene_distance.png file was used to assess whether the genes of interest (zscore>2 and up/down in RNA counts wrt DNA), were spatially clustered along the genome. to do so, we compute the median inter-gene distance for the subset and compared it to a null distribution generated randonly sampling gnes from the full gene set (1000 permutations). as shown in the plotm genome-wide we found no significant clustering. At chromosome level, chr23 and 35 show significant clustering
DOI: 10.15468/dl.n33tzj
title: Occurrence Download

description: A dataset containing 3894 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leucosticte brandti)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 3894 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060322-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f53rse
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus taeda",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 29 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060326-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5yv5h7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Cettia cetti)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060323-250717081556266/datasets/export for details.
DOI: 10.15468/dl.4vw4aq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Cettia cetti)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060324-250717081556266/datasets/export for details.
DOI: 10.15468/dl.pyqbhp
title: Occurrence Download

description: A dataset containing 34250783 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Rhododendron rupicola rupicola, Rhododendron saluenense prostratum, Rhododendron saluenense saluenense, Rhododendron sanguineum cloiophorum, Rhododendron sanguineum didymoides, Rhododendron sanguineum didymum, Rhododendron sanguineum haemaleum, Rhododendron sanguineum himertum, Rhododendron sanguineum sanguineum, Rhododendron scopulorum, Rhododendron seinghkuense, Rhododendron selense dasycladum, Rhododendron selense selense, Rhododendron semnoides, Rhododendron setiferum, Rhododendron setosum, Rhododendron sherriffii, Rhododendron sidereum, Rhododendron siderophyllum, Rhododendron sikkimense, Rhododendron sinogrande, Rhododendron sinogrande, Rhododendron sinonuttallii, Rhododendron sperabiloides, Rhododendron stewartianum, Rhododendron subansiriense, Rhododendron succothii, Rhododendron sulfureum, Rhododendron taggianum, Rhododendron tanastylum lingzhiense, Rhododendron tanastylum tanastylum, Rhododendron tapetiforme, Rhododendron telmateium, Rhododendron temenium dealbatum, Rhododendron temenium gilvum, Rhododendron temenium temenium, Rhododendron tenuifolium, Rhododendron tephropeplum, Rhododendron thomsonii lopsangianum, Rhododendron thomsonii thomsonii, Rhododendron traillianum dictyotum, Rhododendron traillianum traillianum, Rhododendron trichocladum, Rhododendron triflorum, Rhododendron trilectorum, Rhododendron tsariense, Rhododendron tubiforme, Rhododendron uniflorum, Rhododendron uvariifolium, Rhododendron vaccinioides, Rhododendron vellereum, Rhododendron venator, Rhododendron vernicosum, Rhododendron vesiculiferum, Rhododendron virgatum, Rhododendron viridescens, Rhododendron viscidifolium, Rhododendron wallichii, Rhododendron walongense, Rhododendron wardii wardii, Rhododendron wightii, Rhododendron xanthocodon, Rhododendron xanthostephanum, Rhododendron yunnanense, Rhomboda arunachalensis, Rhomboda lanceolata, Rhomboda moulmeinensis, Rhopalephora scaberrima, Rhopalocnemis phalloides, Rhus chinensis chinensis, Rhus himalaica, Rhus parviflora, Rhus punjabensis, Rhus punjabensis pilosa, Rhus punjabensis sinica, Anacardiaceae, Rhynchoglossum lazulinum, Rhynchoglossum obliquum, Rhynchosia capitata, Rhynchosia falconeri, Rhynchosia harae, Rhynchosia himalensis, Rhynchosia himalensis craibiana, Rhynchosia minima, Rhynchosia nepalensis, Rhynchosia pseudocajan, Fabaceae, Rhynchosia vestita, Rhynchospora corymbosa, Rhynchospora rubra, Rhynchostylis retusa, Rhynchotechum calycinum, Rhynchotechum ellipticum, Rhynchotechum vestitum, Ribes alpestre alpestre, Ribes alpestre eglandulosum, Ribes glaciale, Ribes griffithii, Ribes griffithii gongshanense, Ribes himalense himalense)"
 ]
}

 The dataset includes 34250783 records from 9437 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060296-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/t62-a13-sgh
title: Cervidae Goldfuss, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k2r-x0x-phs
title: Capricornis sumatraensis (Bechstein, 1799)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/60h-85j-3ye
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ymj-kn5-hg1
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3wk-44m-xvh
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3x3-z6d-5vn
title: Emydidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cn4-85g-wcd
title: Pongo pygmaeus (Linnaeus, 1760)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qs7-ed7-xw9
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4ka-a6h-jc7
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5bn-2f2-202
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y0p-4ra-fa3
title: Trachypithecus cristatus (Raffles, 1821)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kh1-c8r-m3k
title: Homo sapiens Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ztk-a8a-ddl
title: Rhinoceros Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mnj-7x0-czc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ze0-gaa-baa
title: Hexaprotodon Falconer & Cautley, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d2l-fhq-tl7
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mpk-1tr-fq5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3xz-zsa-lzb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7yb-vf9-r6t
title: Pongo pygmaeus (Linnaeus, 1760)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.