cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.11583/dtu.10259936.v1
title: EllipSys3D large eddy simulation data of single wind turbine wakes in neutral atmospheric conditions

description: This data set represents transient velocity fields obtained by large eddy simulations (LES) of a wind turbine wake, for two different ambient turbulence intensities (4% and 12.8%). EllipSy3D [1-3], the in-house flow solver of DTU Wind Energy, is used to compute the LES data. The complete setup and post processed data are described in:<br><br>http://onlinelibrary.wiley.com/doi/10.1002/we.1736/pdf<br>http://iopscience.iop.org/article/10.1088/1742-6596/1037/7/072001/pdf<br><br>The average flow field is published as Cases 5 and 6 in the first article, corresponding to a low and high ambient turbulence intensity. Two additional LES data sets are added (*_NoAD_*.nc), where the wind turbine model is switched off so one can isolate the wake effect.<br><br>More specific info:<br>- The NREL-5MW rotor is modeled as an actuator disk with a fixed force distribution that does not change with time. The force distribution is based on a rotor resolved detached eddy simulation. The rotor diameter D is 126 m.<br>- The coordinate system is: x=streamwise, y=lateral and z=height.<br>- The LES data is extracted from a plane at hub height (z=90 m) with:<br>a) Spatial dimensions x=-1D,8.5D and y=-2D,2D (actuator disk is located at (x,y,z) = (0, 0, 90) m,<br>b) Spatial sample resolution is D/30 (4.2 m). The numerical grid is twice as fine (D/60).<br>c) Temporal sample resolution is 0.24 s.<br>d) Each plane has 286x121 = 34606 spatial points.<br>e) 15500 planes are stored per case.<br>- The averaged freestream hub height velocity is close to 8 m/s.<br>- Inflow turbulence is modeled by the Mann model.- Each case corresponds to 1 hour LES. This duration is long enough to get converged mean velocity fields for the low ambient turbulence case. However, the high ambient turbulence case could be improved by running a longer LES because the mean streamwise velocity field in the far wake is still asymmetric, where a symmetric mean streamwise velocity field would be expected.- The filenames *_UWV_* should have been called *_UVW_*.<br><br>An example Python script, read_netcfd_and_plot.py, is provided which can read and plot the LES data. <br><br>For questions, please contact: Paul van der Laan, plaa@dtu.dk<br>EllipSys3D references:<br>1: Michelsen, J. A., <em>Basis3D - a Platform for Development of Multiblock PDE Solvers</em>, AFM 92-05, Department of Fluid Mechanics, Technical University of Denmark, December 1994.<br> 2: Michelsen, J. A., Block structured Multigrid solution of 2D and 3D Elliptic PDEs, AFM 94-06, Department of Fluid Mechanics, Technical University of Denmark, May 1994.<br> 3: Sørensen, N. N., <em>General Purpose Flow Solver Applied to Flow Over Hills</em>, Risø-R-827, Risø National Laboratory, Roskilde, Denmark, 1995.
DOI: 10.5517/ccdc.csd.cc2dn1kp
title: CCDC 2223802: Experimental Crystal Structure Determination

description: Related Article: Yutaro Machida, Yudai Tanaka, Yuya Masuda, Aya Kimura, Tsuneomi Kawasaki|2023|Chemical Science|14|4480|doi:10.1039/D3SC00359K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fssxy
title: CCDC 2258161: Experimental Crystal Structure Determination

description: Related Article: Shan-Shan He, Ting Jiang, Wei-Wei Fu, Hong Chen, Shuang Li, Pan Zhou, Jing-Run Shen, Yang Liu, Man-Sheng Chen|2023|Polyhedron|242|116497|doi:10.1016/j.poly.2023.116497
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fssyz
title: CCDC 2258162: Experimental Crystal Structure Determination

description: Related Article: Shan-Shan He, Ting Jiang, Wei-Wei Fu, Hong Chen, Shuang Li, Pan Zhou, Jing-Run Shen, Yang Liu, Man-Sheng Chen|2023|Polyhedron|242|116497|doi:10.1016/j.poly.2023.116497
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fssz0
title: CCDC 2258163: Experimental Crystal Structure Determination

description: Related Article: Shan-Shan He, Ting Jiang, Wei-Wei Fu, Hong Chen, Shuang Li, Pan Zhou, Jing-Run Shen, Yang Liu, Man-Sheng Chen|2023|Polyhedron|242|116497|doi:10.1016/j.poly.2023.116497
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fst02
title: CCDC 2258164: Experimental Crystal Structure Determination

description: Related Article: Shan-Shan He, Ting Jiang, Wei-Wei Fu, Hong Chen, Shuang Li, Pan Zhou, Jing-Run Shen, Yang Liu, Man-Sheng Chen|2023|Polyhedron|242|116497|doi:10.1016/j.poly.2023.116497
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fst13
title: CCDC 2258165: Experimental Crystal Structure Determination

description: Related Article: Shan-Shan He, Ting Jiang, Wei-Wei Fu, Hong Chen, Shuang Li, Pan Zhou, Jing-Run Shen, Yang Liu, Man-Sheng Chen|2023|Polyhedron|242|116497|doi:10.1016/j.poly.2023.116497
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fst24
title: CCDC 2258166: Experimental Crystal Structure Determination

description: Related Article: Shan-Shan He, Ting Jiang, Wei-Wei Fu, Hong Chen, Shuang Li, Pan Zhou, Jing-Run Shen, Yang Liu, Man-Sheng Chen|2023|Polyhedron|242|116497|doi:10.1016/j.poly.2023.116497
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g7kgr
title: CCDC 2271384: Experimental Crystal Structure Determination

description: Related Article: E. Pehlivanlar, S. Ö. Yıldırım, R. Şimşek, M. Akkurt, R.J. Butcher, A. Bhattarai|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|664|doi:10.1107/S2056989023005455
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g8564
title: CCDC 2271965: Experimental Crystal Structure Determination

description: Related Article: B.B. Chakraborty, S. Paul, S. Anwar, S. Choudhury|2023|IUCrData|8|x230558|doi:10.1107/S2414314623005588
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.57841/casdc.0001624
title: 植物微形态数据库
DOI: 10.6084/m9.figshare.23694426
title: The raw data for "Genomic Selection to Improve Husk Tightness Based on Genomic Molecular Markers in Maize"

description: Over a period of two years, an association panel of maize inbred lines was cultivated across three sites, divided into four subgroups. To predict HTI, marker data from three sequencing platforms - Genotyping by sequencing (GBS), RNA sequencing (RNA-seq), and chips (50 K) - were utilized through six statistical models: ridge regression best linear unbiased prediction (RRBLUP), BayesA, BayesB, BayesC, Bayesian LASSO, and Bayesian ridge regression.
DOI: 10.6084/m9.figshare.23694426.v1
title: The raw data for "Genomic Selection to Improve Husk Tightness Based on Genomic Molecular Markers in Maize"

description: Over a period of two years, an association panel of maize inbred lines was cultivated across three sites, divided into four subgroups. To predict HTI, marker data from three sequencing platforms - Genotyping by sequencing (GBS), RNA sequencing (RNA-seq), and chips (50 K) - were utilized through six statistical models: ridge regression best linear unbiased prediction (RRBLUP), BayesA, BayesB, BayesC, Bayesian LASSO, and Bayesian ridge regression.
DOI: 10.6084/m9.figshare.23685588
title: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> - Table 1

description: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> Maura A. Tilbury a,b,1, Thi Quynh Tran c,1, Dilip Shingare a,b, Mathilde Lefevre c,d, Anne Marie Power e, Philippe Leclère c,2,**, J. Gerard Wall a,b,2,* <em>Journal of the Royal Society Interface</em> Datasets for Table 1 - Mechanical properties (modulus and adhesion) of rPpolcp19k-his proteins incubated in gland-like (pH4.0, 150 mM NaCl) or seawater-like (pH 8.0, 600 mM NaCl) conditions, measured by PFQNM or nDMA in liquid.
DOI: 10.6084/m9.figshare.23685588.v1
title: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> - Table 1

description: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> Maura A. Tilbury a,b,1, Thi Quynh Tran c,1, Dilip Shingare a,b, Mathilde Lefevre c,d, Anne Marie Power e, Philippe Leclère c,2,**, J. Gerard Wall a,b,2,* <em>Journal of the Royal Society Interface</em> Datasets for Table 1 - Mechanical properties (modulus and adhesion) of rPpolcp19k-his proteins incubated in gland-like (pH4.0, 150 mM NaCl) or seawater-like (pH 8.0, 600 mM NaCl) conditions, measured by PFQNM or nDMA in liquid.
DOI: 10.6084/m9.figshare.23685579
title: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> - Figure 8

description: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> Maura A. Tilbury a,b,1, Thi Quynh Tran c,1, Dilip Shingare a,b, Mathilde Lefevre c,d, Anne Marie Power e, Philippe Leclère c,2,**, J. Gerard Wall a,b,2,* <em>Journal of the Royal Society Interface</em> Datasets for Figure 8 - AFM-nDMA analysis of rPpolcp19k-his fibres formed under gland conditions.
DOI: 10.6084/m9.figshare.23685579.v1
title: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> - Figure 8

description: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> Maura A. Tilbury a,b,1, Thi Quynh Tran c,1, Dilip Shingare a,b, Mathilde Lefevre c,d, Anne Marie Power e, Philippe Leclère c,2,**, J. Gerard Wall a,b,2,* <em>Journal of the Royal Society Interface</em> Datasets for Figure 8 - AFM-nDMA analysis of rPpolcp19k-his fibres formed under gland conditions.
DOI: 10.6084/m9.figshare.23685510
title: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> - Figure 6

description: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> Maura A. Tilbury a,b,1, Thi Quynh Tran c,1, Dilip Shingare a,b, Mathilde Lefevre c,d, Anne Marie Power e, Philippe Leclère c,2,**, J. Gerard Wall a,b,2,* <em>Journal of the Royal Society Interface</em> <br> Datasets for Figure 6 - Force curves and Adhesion forces determined for rPpolcp19k-his fibrils developed over 11 days under gland-like conditions.
DOI: 10.6084/m9.figshare.23685510.v1
title: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> - Figure 6

description: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> Maura A. Tilbury a,b,1, Thi Quynh Tran c,1, Dilip Shingare a,b, Mathilde Lefevre c,d, Anne Marie Power e, Philippe Leclère c,2,**, J. Gerard Wall a,b,2,* <em>Journal of the Royal Society Interface</em> <br> Datasets for Figure 6 - Force curves and Adhesion forces determined for rPpolcp19k-his fibrils developed over 11 days under gland-like conditions.
DOI: 10.11583/dtu.14320166
title: Room Impulse Response Dataset - ACT, DTU Elektro (011, IEC; plane, sphere)

description: Dataset of Room Impulse Responses measured at the Acoustic Technology group, DTU Elektro. <br><br>The dataset consists of measurements of the acoustic impulse response inside two rooms of different acoustic characteristics. <br>The dataset includes a total of 806 measured impulse responses for each of the rooms, where the microphone was automatically positioned using a scanning robotic arm.<br>A detailed description of the measurement setup can be found in the Readme.html file, as well as in the publication S. A. Verburg and E. Fernandez-Grande, "Reconstruction of the sound field in a room using compressive sensing." J. Acoust. Soc. Am. 143(6), 3770-3779 (2018).<br>
DOI: 10.11583/dtu.14320166.v1
title: Room Impulse Response Dataset - ACT, DTU Elektro (011, IEC; plane, sphere)

description: Dataset of Room Impulse Responses measured at the Acoustic Technology group, DTU Elektro. <br><br>The dataset consists of measurements of the acoustic impulse response inside two rooms of different acoustic characteristics. <br>The dataset includes a total of 806 measured impulse responses for each of the rooms, where the microphone was automatically positioned using a scanning robotic arm.<br>A detailed description of the measurement setup can be found in the Readme.html file, as well as in the publication S. A. Verburg and E. Fernandez-Grande, "Reconstruction of the sound field in a room using compressive sensing." J. Acoust. Soc. Am. 143(6), 3770-3779 (2018).<br>
DOI: 10.6084/m9.figshare.23685789
title: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> - Figure 2

description: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> Maura A. Tilbury a,b,1, Thi Quynh Tran c,1, Dilip Shingare a,b, Mathilde Lefevre c,d, Anne Marie Power e, Philippe Leclère c,2,**, J. Gerard Wall a,b,2,* <em>Journal of the Royal Society Interface</em> Datasets for Figure 2 - Amyloid formation by rPpolcp19k-his, as measured by Thioflavin T assay.
DOI: 10.6084/m9.figshare.23685789.v1
title: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> - Figure 2

description: <strong>Self-assembly of a barnacle cement protein into intertwined amyloid fibres and determination of their adhesive and viscoelastic properties</strong> Maura A. Tilbury a,b,1, Thi Quynh Tran c,1, Dilip Shingare a,b, Mathilde Lefevre c,d, Anne Marie Power e, Philippe Leclère c,2,**, J. Gerard Wall a,b,2,* <em>Journal of the Royal Society Interface</em> Datasets for Figure 2 - Amyloid formation by rPpolcp19k-his, as measured by Thioflavin T assay.
DOI: 10.5281/zenodo.8009761
title: Polythetic evidence supports the introduction of Hebeloma dipterocarpohilum sp. nov. (Hymenogastraceae, Agaricales), a lookalike of the edible H. parvisporum

description: <em>Hebeloma dipterocarpohilum</em> sp. nov. is described and illustrated based on materials collected from Northern Thailand. Microscopic characters’ drawings, basidiospores’ scanning microphotographs and pictures of the basidiomes are provided. Phylogenetic analyses based on DNA sequences of ITS and MCM7 gene regions were carried out to support species separation from the lookalike <em>H. parvisporum</em>. The novel species formed a well-supported clade with the closely related <em>Hebeloma parvisporum.</em> Micromorphologically, <em>H. dipterocarpophilum</em> has longer and broader cheilocystidia compared to <em>H. parvisporum. </em>Both species also differ in ecology, with<em> H. dipterocarpohilum</em> occurring in dry dipterocarp forests at elevations lower than 1,000 m a.s.l., whereas <em>H. parvisporum</em> is found at higher elevations, in Fagaceae-dominated forests without Dipterocarpaceae, in neighbouring Laos.
DOI: 10.5281/zenodo.8009762
title: Polythetic evidence supports the introduction of Hebeloma dipterocarpohilum sp. nov. (Hymenogastraceae, Agaricales), a lookalike of the edible H. parvisporum

description: <em>Hebeloma dipterocarpohilum</em> sp. nov. is described and illustrated based on materials collected from Northern Thailand. Microscopic characters’ drawings, basidiospores’ scanning microphotographs and pictures of the basidiomes are provided. Phylogenetic analyses based on DNA sequences of ITS and MCM7 gene regions were carried out to support species separation from the lookalike <em>H. parvisporum</em>. The novel species formed a well-supported clade with the closely related <em>Hebeloma parvisporum.</em> Micromorphologically, <em>H. dipterocarpophilum</em> has longer and broader cheilocystidia compared to <em>H. parvisporum. </em>Both species also differ in ecology, with<em> H. dipterocarpohilum</em> occurring in dry dipterocarp forests at elevations lower than 1,000 m a.s.l., whereas <em>H. parvisporum</em> is found at higher elevations, in Fagaceae-dominated forests without Dipterocarpaceae, in neighbouring Laos.
DOI: 10.5281/zenodo.8153741
title: Polythetic evidence supports the introduction of Hebeloma dipterocarpohilum sp. nov. (Hymenogastraceae, Agaricales), a lookalike of the edible H. parvisporum

description: <em>Hebeloma dipterocarpohilum</em> sp. nov. is described and illustrated based on materials collected from Northern Thailand. Microscopic characters’ drawings, basidiospores’ scanning microphotographs and pictures of the basidiomes are provided. Phylogenetic analyses based on DNA sequences of ITS and MCM7 gene regions were carried out to support species separation from the lookalike <em>H. parvisporum</em>. The novel species formed a well-supported clade with the closely related <em>Hebeloma parvisporum.</em> Micromorphologically, <em>H. dipterocarpophilum</em> has longer and broader cheilocystidia compared to <em>H. parvisporum. </em>Both species also differ in ecology, with<em> H. dipterocarpohilum</em> occurring in dry dipterocarp forests at elevations lower than 1,000 m a.s.l., whereas <em>H. parvisporum</em> is found at higher elevations, in Fagaceae-dominated forests without Dipterocarpaceae, in neighbouring Laos.
DOI: 10.5281/zenodo.8153907
title: Example Operetta Dataset

description: This is a microscopy image dataset generated by the Perkin Elmer Operetta HCS microscope by of the user of the PTBIOP EPFL facility. As of the 17th of July 2023, opening this file in ImageJ/Fiji using the BioFormats 6.14 library, this dataset generates a Null Pointer Exception. A post on forum.image.sc is linked to this issue: https://forum.image.sc/t/null-pointer-exception-in-perkin-elmer-operetta-dataset-with-bio-formats-6-14/83784
DOI: 10.5281/zenodo.8153906
title: Example Operetta Dataset

description: This is a microscopy image dataset generated by the Perkin Elmer Operetta HCS microscope by of the user of the PTBIOP EPFL facility. As of the 17th of July 2023, opening this file in ImageJ/Fiji using the BioFormats 6.14 library, this dataset generates a Null Pointer Exception. A post on forum.image.sc is linked to this issue: https://forum.image.sc/t/null-pointer-exception-in-perkin-elmer-operetta-dataset-with-bio-formats-6-14/83784
DOI: 10.6084/m9.figshare.23694492
title: <strong>Temperature downshifts induce biofilm formation in </strong><em><strong>Pseudomonas aeruginosa</strong></em><strong> through the SiaABCD signaling module and the downstream c-di-GMP/FleQ/Psl pathway</strong>

description: RNA-seq data (PA27_12h_37: ATCC 27853 37°C; PA27_12h_RT: ATCC 27853 RT)
DOI: 10.6084/m9.figshare.23694492.v1
title: <strong>Temperature downshifts induce biofilm formation in </strong><em><strong>Pseudomonas aeruginosa</strong></em><strong> through the SiaABCD signaling module and the downstream c-di-GMP/FleQ/Psl pathway</strong>

description: RNA-seq data (PA27_12h_37: ATCC 27853 37°C; PA27_12h_RT: ATCC 27853 RT)
DOI: 10.11583/dtu.23292623
title: Bandara_et_al_2023_Exploring_bacterial_community_composition_and_immune_gene_expression_of_European_eel_larvae_(<em>Anguilla anguilla</em>)_in relation_to_first-feeding_diets_Repository_Data.xlsx

description: The data contains the results of an experiment conducted to investigate the effect of different larval diets on the survival, microbiome and immune system ontogeny of European eel larvae at the first-feeding stage. The manuscript based on the results has been submitted to the PlosOne journal. The data has been stored here to fulfil the journal's requirement of data availability.
DOI: 10.11583/dtu.23292623.v1
title: Bandara_et_al_2023_Exploring_bacterial_community_composition_and_immune_gene_expression_of_European_eel_larvae_(<em>Anguilla anguilla</em>)_in relation_to_first-feeding_diets_Repository_Data.xlsx

description: The data contains the results of an experiment conducted to investigate the effect of different larval diets on the survival, microbiome and immune system ontogeny of European eel larvae at the first-feeding stage. The manuscript based on the results has been submitted to the PlosOne journal. The data has been stored here to fulfil the journal's requirement of data availability.