cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25903/n19t-sa64
title: 1772 Cook expedition

description: <p>This dataset describes the 1772-1775 voyages of the Resolution under Captain Cook and the Adventure under Captain Furneaux<p>
<p>Software/equipment used to create/collect the data: Excel, JCU Libraries<p>
<p>Software/equipment used to manipulate/analyse the data: TLCMap<p>
DOI: 10.4225/28/59c47d4b3a5f2
title: Phenotypic determinants of survival: a field study
DOI: 10.25903/5fdw-ne77
title: A cross-cultural study of filial piety and palliative care knowledge: moderating effect of culture and universality of filial piety

description: <p>The primary aim of this study is to investigate the moderating effect of culture on the relationships between filial piety and palliative care knowledge. The secondary aim is to investigate whether filial piety is a universal construct across Singaporean and Australian cultures. A total of 508 participants living in Singapore and Australia were surveyed between May and October 2020. The final sample comprised of 406 participants, with 224 Singaporeans and 182 Australians. There were 289 females (71.1%), 115 males (28.3%), and two unspecified gender (0.6%) in the sample, with an average age of 27.27 years (SD = 9.79, range = 18-73).</p>
<p>Software/equipment used to create/collect the data: SPSS</p>
<p>Software/equipment used to manipulate/analyse the data: SPSS</p>
DOI: 10.25903/5eec083a371b3
title: The effects of constant and fluctuating pCO2 on damselfishes

description: <p>This data set contains data collected by Kelly Hannan of James Cook University in 2017 dealing with the effects of stable and increasing/decreasing elevated pCO2, on the physiological performance of <em>Acanthochromis polyacanthus</em> and <em>Amblyglyphidodon curacao.</em></p>
DOI: 10.25903/cemc-3512
title: The population sizes and global extinction risk of reef-building coral species at biogeographic scales
DOI: 10.25903/1g6e-k995
title: Circulation of malaria and arboviruses in the Solomon Islands

description: Abstract [Related Publication]: Across the Pacific, and including in the Solomon Islands, outbreaks of arboviruses such as dengue, chikungunya, and Zika are increasing in frequency, scale and impact. Outbreaks of mosquito-borne disease have the potential to overwhelm the health systems of small island nations. This study mapped the seroprevalence of dengue, Zika, chikungunya and Ross River viruses in 5 study sites in the Solomon Islands and evaluated potential risk factors for infection. Serum samples from 1,021 participants were analysed by ELISA. Overall, 56% of participants were flavivirus-seropositive for dengue (28%), Zika (n=1%) or both flaviviruses (n=276); and 53% of participants were alphavirus-seropositive for chikungunya (3%), Ross River virus (31%) or both alphaviruses (18%). Seroprevalence for both flaviviruses and alphaviruses varied by village and age of the participant. The high seroprevalence of DENV does suggests that natural population immunity is still the main control mechanism for arboviruses in the Solomon Islands. There is a real need to increase the diagnostic capacities for each of the arboviruses to support effective case management and to provide timely information to inform vector control efforts. The Solomon Islands remains vulnerable to outbreaks of DENV, ZIKV and CHIKV, and likely has ongoing transmission of RRV.  To prevent and prepare for future outbreaks, priority actions include understanding the vectors’ behaviours of the Aedes vectors for DENV, ZIKV and CHIKV as well as the Culex vectors for RRV.

The full methodology is available in the Open Access publication from the Related Publications link below.
DOI: 10.25903/e1k7-4642
title: ShoreView Continuous Geo-referenced Imagery and Data 

description: <p>The overall project strategy is called the Coastal Health Archive and Monitoring Program (CHAMP). High resolution panolapse imagery & overlapping images with continuous views of the intertidal shorelines of northern tropical Australia. The category of data includes - aerial shoreline imagery - the extent acquired over the last decade has been approximately 10,000 km from Broome to Cairns, including key islands in Torres Strait. Imagery have been collected using high resolution cameras from low flying helicopters. Data has been collected by JCU researchers and collaborators.</p>
<p>Primary assessment of imagery includes: coordinate location of each image, the assignment of categories of ecosystem type, structure like tree height, condition, and the types and severity of processes observed like trees damaged by storms, fire, weeds, livestock, erosion. Further assessment includes apportioning these categories for specific shoreline sections, and ranking conditions for summary in regional reporting frameworks. The software required for uploading, processing and assessment of data is in development.</p>
DOI: 10.15468/dl.v4ymr8
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.165366 -36.831636, 144.165366 -36.836127, 144.167612 -36.836127, 144.167612 -36.831636, 144.165366 -36.831636))"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075336-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4225/28/598a96f71288a
title: Transcriptomic analysis of thermally stressed Symbiodinium reveals differential expression of stress and metabolism genes
DOI: 10.25903/5dde18faf37e3
title: Data from ''Human exploitation shapes productivity-biomass relationships on coral reefs"

description: <p>This entry refers to Morais, Connolly and Bellwood 'Human exploitation shapes productivity-biomass relationships on coral reefs' in the journal Global Change Biology. It encompasses R scripts and multiple data tables used to reproduce the analyses of the paper.</p><p>The compressed file in this data entry encompasses three folders: '1st Inputs' is where the input data tables are located, '2nd Scripts' is where the scripts with functions, routines and procedures are located; and '3rd Outputs' is the folder to which figures and tables will be exported once the analyses are replicated.</p><p>Abstract [Related Publication]: Coral reef fisheries support the livelihoods of millions of people in tropical countries, despite large‐scale depletion of fish biomass. While human adaptability can help to explain the resistance of fisheries to biomass depletion, compensatory ecological mechanisms may also be involved. If this is the case, high productivity should coexist with low biomass under relatively high exploitation. Here we integrate large spatial scale empirical data analysis and a theory‐driven modelling approach to unveil the effects of human exploitation on reef fish productivity–biomass relationships. We show that differences in how productivity and biomass respond to overexploitation can decouple their relationship. As size‐selective exploitation depletes fish biomass, it triggers increased production per unit biomass, averting immediate productivity collapse in both the modelling and the empirical systems. This ‘buffering productivity’ exposes the danger of assuming resource production–biomass equivalence, but may help to explain why some biomass‐depleted fish assemblages still provide ecosystem goods under continued global fishing exploitation.</p><p> </p>
DOI: 10.4225/28/59fbbefa1337c
title: Network metrics and spatial distribution of seagrass in the central Great Barrier Reef
DOI: 10.25903/5d11645d15e5a
title: Modelling written language production in English: A Bayesian model of spelling

description: <p>These data were gathered from PhD research and include:</p><p>- Outputs from testing the Bayesian model of spelling with items from a NAPLAN computerised dictation task trial (Willet & Gardiner, 2009) for grades 3, 5, 7, and 9 in 2018.</p><p>- Spreadsheets containing collated model outputs and student data from a NAPLAN computerised dictation task trial (Willet & Gardiner, 2009) for grades 3, 5, 7, and 9 for analysis in 2018.</p><p>- Analysis comparing model data with student data for grades 3, 5, 7, and 9 using independant samples Bayesian t-tests in 2018.</p>
DOI: 10.25903/va27-9g82
title: Increasing physical exercise through action and coping planning: survey data

description: <p>This study aims to explore how action and coping planning can help to increase physical activity levels of a normal healthy population consisting of young adults within a short time duration of two weeks.</p>
<p>The study was delivered through Qualtrics software, Version 2020 (Qualtrics, Provo, UT, <a href="https://www.qualtrics.com/">https://www.qualtrics.com</a> ). To reduce attrition rates, participants were sent a reminder email through Qualtrics at the mid-point of the study (i.e., one week after T1) to encourage them to continue their exercise plans according to their intentions and plans stated at T1. Participants were provided with summary information about the study in a prefacing page to the questionnaires. Participants were invited to provide informed consent to participate, verify they were above 18 years old, confirm that they were keen to increase their physical activity levels, and agree to complete the measures at both T1 and T2 as well as to be contacted with reminder emails containing instructions.<br />The T1 measures were the IPAQ past 14 days, IPAQ intentions next 14 days, ACPS, elaborate their plans, IMI, and demographics including past and/or current injuries. The T2 measures were the IPAQ past 14 days, perceived effectiveness of planning, and confidence in continuing their levels of physical exercise beyond T2. They were also given an option to opt out of the study without penalty and asked if they had answered truthfully at the end of the questionnaire for both time points</p>
<p>The full methodology is available in the Open Access publication from the Related publications link below.</p>
<p>This dataset consists of 4 SPSS data files (saved in .sav and .csv formats) including the merged and cleaned data file (available via conditional access), the analysis set, raw T1 and raw T2 which are restricted. The codebook for the merged and cleaned data file is available from the link below.</p>
<p>Software/equipment used to create/collect the data: Qualtrics Survey Software</p>
<p>Software/equipment used to manipulate/analyse the data: SPSS</p>
DOI: 10.4225/28/5667b4cc1f9e4
title: Conservation planning accounting for climate warming disturbance
DOI: 10.25903/8r8h-hn62
title: Far North Queensland Microclimate - FNQ-microclim

description: <p>This is a supplementary record on calculated bioclimatic variables from the Far North Queensland Microclimate (FNQ microclim) data sets on the Terrestrial Ecosystem Research Network, Data Discovery Portal and soil attributes studied along an elevation gradient in the Australian Wet Tropics bioregion (40 - 1550 m a.s.l.).</p>
<p>This record contains 4 csv files that contain data on the microclimate obtained from the TMS-4 sensors and bioclimatic variables calculated from raw sensor data using monthly averages in soil and air temperatures from all the study sites. Microclimate information such as soil, surface air and above ground air temperatures and soil nutrients and moisture availability data can be accessed via the URLs provided. In addition the csv files contain other variables related to soil nutrients, soil properties and Tree basal Area calculated for each of the study sites where the microclimate information were captured.</p>
DOI: 10.25903/3r4v-3p22
title: Participation in exercise and sport for individuals with minimal disability from multiple sclerosis: Preliminary qualitative study data

description: <p>The aim of this study was to explore the experience of participation in sport and exercise for individuals with multiple sclerosis (MS) with minimal disability. The objectives were to gain an understanding of key factors that influence participation in sport and exercise and to determine support required by individuals with MS to participate in their choice of sport and exercise for as long as possible. A qualitative, descriptive study utilising three focus groups was conducted. Participants were individuals with MS who had an Expanded Disability Status Scale score of 0-4, indicating full ambulation. Data were analysed thematically aided by NVivo software.</p>
<p>This data record includes participant demographics, focus group summaries, NVivo coding nodes, thematic maps and member checking sheets. Audio files and transcriptions are not available due to confidentiality reasons.</p>
<p>Software/equipment used to create/collect the data: Excel NVivo software version 12</p>
<p>Software/equipment used to manipulate/analyse the data: SPSS version 27</p>
DOI: 10.25903/5d5f8271c679c
title: Data from: The life cycle of the Acropora coral-eating flatworm (AEFW), Prosthiostomum acroporae

description: <p>Abstract [Related Publication]: As coral aquaculture is increasing around the world for reef restoration and trade, mitigating the impact of coral predators, pathogens and parasites is necessary for optimal growth. The Acropora coral-eating flatworm (AEFW), Prosthiostomum acroporae (Platyhelminthes: Polycladida: Prosthiostomidae) feeds on wild and cultivated Acropora species and its inadvertent introduction into reef tanks can lead to the rapid death of coral colonies. To guide the treatment of infested corals we investigated the flatworm’s life cycle parameters at a range of temperatures that represent those found in reef tanks, coral aquaculture facilities and seasonal fluctuations in the wild. We utilized P. acroporae from a long-term in vivo culture on Acropora species to examine the effects of temperature (3°C increments from 21 to 30°C) on flatworm embryonation period, hatching success, hatchling longevity, and time to sexual maturity. Our findings show that warmer seawater shortened generation times; at 27°C it took, on average, 11 days for eggs to hatch, and 35 days for flatworms to reach sexual maturity, giving a minimum generation time of 38 days, whereas at 24°C the generation time was 64 days. Warmer seawater (24–30°C) also increased egg hatching success compared to cooler conditions (21°C). These results indicate that warmer temperatures lead to higher population densities of P. acroporae. Temperature significantly increased the growth rate of P. acroporae, with individuals reaching a larger size at sexual maturity in warmer temperatures, but it did not influence hatchling longevity. Hatchlings, which can swim as well as crawl, can survive between 0.25 and 9 days in the absence of Acropora, and could therefore disperse between coral colonies and inter-connected aquaria. We used our data to predict embryonation duration and time to sexual maturity at 21–30°C, and discuss how to optimize current treatments to disrupt the flatworm’s life cycle in captivity.</p><p>The full methodology is available in the Open Access publication from the Related Publications link below.</p>
DOI: 10.25903/5c89d99f5d654
title: Trophic interactions among key target reef fish in Kenya

description: <p>Trophic interactions (i.e., predator-prey relationships) among key target reef fish in Kenya.</p>
DOI: 10.25903/8nb2-8628
title: eReefs modelling suggests Trichodesmium may be a major nitrogen source in the Great Barrier Reef

description: <p>The research is important for the Great Barrier Reef (GBR) water quality management. The data was collected for the quantification of the contribution of <em>Trichodesmium</em> to the nitrogen budget of the GBR. Linux operating system, C compiler and NETCDF library were used to build the modified EMS applications on AIMS HPC. The EMS version used is 1.2.1. The modified EMS was derived from the eReefs model (https://ereefs.org.au/ereefs) and the model descriptions are found in Baird et al. (2020). Methods for collecting the data include the following:</p>
<p>Hydrodynamic model forcing available in <a href="https://research.csiro.au/ereefs/models/models-about/models-hydrodynamics/">https://research.csiro.au/ereefs/models/models-about/models-hydrodynamics/</a>; Biogeochemical (BGC) model forcing (Simulated hydrodynamic model output, regional wave model data, 2019 catchment conditions of nutrient and sediment loads available in <a href="https://svnserv.csiro.au/svn/CEM/projects/eReefs/model/gbr4_bgc_hindcast/gbr4_H2p0_B3p2_Cb/">https://svnserv.csiro.au/svn/CEM/projects/eReefs/model/gbr4_bgc_hindcast/gbr4_H2p0_B3p2_Cb/</a>); Initialisation file: GBR4 BGC 3p1 initialisation data.              </p>
<p>The 4km resolution grid of the EMS was run on AIMS HPC from 1/12/2010 to 30/11/2012 and the data was collected on 17/02/2022. Software-specific information needed to interpret the data are R Software version 3.5.1, GNU Compiler Collection (GCC) version 6.1.0, network Common Data Form (NetCDF-cxx) version 4.2.1, Open Message Passing Interface (OpenMPI-gcc) version 1.10.2 and NetCDF Operators (NCO) version 4.5.5. R scripts for post-processing simulated data are available in <a href="https://github.com/Chinenyeani1986/Trichodesmium-N-budget">https://github.com/Chinenyeani1986/Trichodesmium-N-budget</a>.</p>
DOI: 10.25903/5da3d2eb955fb
title: Size and diet of newly settled crown-of-thorns starfish from Australia's Great Barrier Reef

description: <p>This dataset provides:</p><ul><li>Size (diameter in mm)</li><li>Diet (coralline algae versus scleractinian coral)</li><li>Estimated ages (as in 0 days old on 10th December 2014)</li><li>Date of collection (in day-month-year)</li><li>Reef of collection (Reef name, ID)</li><li>Site of collection (Latitude/Longitude)</li></ul><p>of newly settled crown-of-thorns starfish (0+ starfish, <em>Acanthaster</em> cf. <em>solaris</em>) that were sampled between 7 May and 15 December 2015 from 64 reefs and 111 sites of Australia's Great Barrier Reef.</p>
DOI: 10.25903/5d5de1e49aae9
title: Dataset describing the detection of Plasmodium falciparum in mosquito excreta and saliva

description: <p>Abstract [Related Publication]: Malaria is the most important vector-borne disease in the world. Epidemiological and ecological studies of malaria traditionally utilize detection of Plasmodium sporozoites in whole mosquitoes or salivary glands by microscopy or serological or molecular assays. However, these methods are labor-intensive, and can over- or underestimate mosquito transmission potential. To overcome these limitations, alternative sample types have been evaluated for the study of malaria. It was recently shown that Plasmodium could be detected in saliva expectorated on honey-soaked cards by Anopheles stephensi, providing a better estimate of transmission risk. We evaluated whether excretion of Plasmodium falciparum nucleic acid by An. stephensi correlates with expectoration of parasites in saliva, thus providing an additional sample type for estimating transmission potential. Mosquitoes were exposed to infectious blood meals containing cultured gametocytes, and excreta collected at different time points post-exposure. Saliva was collected on honey-soaked filter paper cards, and salivary glands were dissected and examined microscopically for sporozoites. Excreta and saliva samples were tested by real time polymerase chain reaction (RT-rtPCR).</p><p>The dataset consists of a 6 worksheets and includes a description of the parameters for each of the 5 experiments listed below and the data for each experiment:</p><ul><li>Description (parameters)</li><li>Plasmodium in excreta from groups of mosquitoes</li><li>Plasmodium in excreta, saliva and salivary glands </li><li>Evaluation of parasite development in the mosquito - Parasite_dev_oocyst</li><li>Evaluation of parasite development in the mosquito - Parasite_dev_sporos</li><li>Survival analysis</li></ul><p>The full methodology is available in the Open Access publication from the Related Publications link below.</p><p> </p>
DOI: 10.4225/28/571eaea997585
title: The role of fisher knowledge on the susceptibility of spawning aggregations to fishing: interview data from Papua New Guinea
DOI: 10.25903/5ea0dd85f8ea9
title: Checklist of the vascular flora of the Sunda-Sahul Convergence Zone v1.1

description: <p>This is a working checklist of vascular plants for the Sunda-Sahul Convergence Zone (comprising Australia, Papua New Guinea, Indonesia, Philippines, Thailand, Laos, Myanmar, Malaysia, Singapore, Cambodia, Brunei and Vietnam) coded into nested biogeographic regions.</p>
DOI: 10.4225/28/59114b901bb70
title: Nutrient concentrations of crops and chemical characteristics of soils from selected food gardens in Bena, Eastern Highlands Province, Papua New Guinea
DOI: 10.25903/5b90c1897397a
title: Parasite detection in the ornamental fish trade using environmental DNA

description: <p>The following dataset was collected as part of a PhD thesis candidature by Alejandro Trujillo-González. Data provides threshold cycles (Ct) and melting temperature (Tm) values determined for amplicons in quantitative PCR tests and assays ran in a QuantStudio3™ Real-Time PCR System (ThermoFisher Scientific Inc., Brisbane) using QuantStudio™ Design and Analysis Software (version 1.4.2).</p><p>The full methodology is available in the Open Access publication from the Related Publications link below.</p>
DOI: 10.25903/nqdz-g356
title: Physiotherapists perspectives of telehealth for children with developmental delay: questionnaire results data set 

description: <p>Excel record of questionnaire questions and responses. Questions requiring a confidential response (phone number and name) have been removed. Associations between responses have been included as included in paper under review relating to this record. <br />The questionnaire was distributed as part of the survey component of the overall project. </p>
<p>This data set includes the following:</p>
<ul>
<li>An attachment with questionnaire questions in MS Word (also saved in PDF format for data publication)</li>
<li>The demographic data collected in the questionnaire presented as a table in a MS Word document (and saved in PDF)</li>
<li>Questionnaire responses recorded in an MS Excel document along with associations between variables of interest (also saved in Open Document (.ods) format for data publication)</li>
</ul>
<p>The full methodology is available in the Open Access publication from the Related publications link below.</p>
DOI: 10.25903/nmby-eg26
title: A synthesis of knowledge about motives for participation in perpetual conservation easements

description: <p>Given the increasing importance of private land conservation, we conducted a literature review of the studies focusing on motives for participation. We focused on participation in perpetual conservation easements as these are one of the most frequently used programs and also lacking a comprehensive review. The data in this publication contain the list of publications that were included in the literature search conducted for this review and the excel table that was created to interpret the literature. Detailed methods are available in the open access article.</p>
<p>Software/equipment used to create/collect the data: Excel Endnote</p>
<p>Software/equipment used to manipulate/analyse the data: Excel Endnote</p>
DOI: 10.15468/dl.jeyrgg
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Duttaphrynus melanostictus (Schneider, 1799))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900",
 "BasisOfRecord is one of (Specimen)",
 "Country is one of (Indonesia)",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 20000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 164 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075337-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.