cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29538791.v1
title: Pan_Disease_Mouse_Neutrophil.h5ad

description: Neutrophils, the most abundant circulating leukocytes, are classically viewed as short-lived, pro-inflammatory effectors. Recent work, however, hints at far greater transcriptional plasticity, especially during disease. To create a unified resource for exploring this diversity we generated a single-cell transcriptomic atlas of neutrophils across ten mouse disease models that span five pathophysiological categories: metabolic disorder, autoimmunity, sterile tissue damage, peripheral solid tumours and intracranial glioma. Using the 10x Genomics platform we profiled 521,436 high-quality neutrophils harvested from bone marrow, blood, spleen and the corresponding disease-affected tissues, producing matched bulk RNA-seq of purified neutrophil populations for validation.Unsupervised integration of all cells reveals two recurring, unconventional neutrophil states.(1) A tissue-resident state, enriched in inflamed organs, co-expresses Cd274 (PD-L1), Vegfa and antigen-presentation machinery, suggesting immuno-regulatory and pro-angiogenic functions.(2) A circulating state, prominent in blood and spleen, displays high Cd244 and type-2 immune signatures but reduced maturation markers, indicative of an immature, cytokine-responsive phenotype.The complete dataset—raw FASTQ files (NGDC, CRA020963, https://ngdc.cncb.ac.cn/bioproject/browse/CRA020963 ) and processed single-cell matrices with cell-level metadata, UMAP coordinates and gene annotations (Figshare, https://doi.org/10.6084/m9.figshare.29538791)—is released in Scanpy (.h5ad) formats. This resource enables systematic interrogation of neutrophil heterogeneity across disparate pathological contexts, offers a benchmark for computational method development, and provides a reference for translational studies targeting neutrophil biology.
DOI: 10.25901/2f0d-vc53
title: Myall Vale B (Irrigated) Flux Data Release 2025_v1
DOI: 10.17632/ygkxfngmbx
title: Data: Optimization of a combined thermal annealing and isostatic pressing process for mechanical and surface enhancement of Ultem FDM parts using Doehlert experimental designs

description: Raw data form: Optimization of a combined thermal annealing and isostatic pressing process
for mechanical and surface enhancement of Ultem FDM parts using Doehlert
experimental designs. https://doi.org/10.1016/j.jmapro.2022.12.027
DOI: 10.15468/dl.w7dqjj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Misgurnus anguillicaudatus",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003693-250717081556266/datasets/export for details.
DOI: 10.17632/grbmtp2k4w
title: Female fibroblast activation is estrogen-mediated in sex-specific 3D-bioprinted pulmonary artery adventitia models

description: Pulmonary arterial hypertension (PAH) impacts male and female patients in different ways. Female patients exhibit a greater susceptibility to disease (4:1 female-to-male ratio) but live longer after diagnosis than male patients. This complex sexual dimorphism is known as the estrogen paradox. Prior studies suggest that estrogen signaling may be pathologic in the pulmonary vasculature and protective in the heart, yet the mechanisms underlying these sex-differences in PAH remain unclear. PAH is a form of a pulmonary vascular disease that results in scarring of the small blood vessels, leading to impaired blood flow and increased blood pressure. Over time, this increase in blood pressure causes damage to the heart. Many previous studies of PAH relied on male cells or cells of undisclosed origin for in vitro modeling. Here we present a dynamic, 3D-bioprinted model that incorporates cells and circulating sex hormones from female patients to specifically study how female patients respond to changes in microenvironmental stiffness and sex hormone signaling. Poly(ethylene glycol)-alpha methacrylate (PEGαMA)-based hydrogels containing female human pulmonary artery adventitia fibroblasts (hPAAFs) from idiopathic PAH (IPAH) or control donors were 3D bioprinted to mimic pulmonary artery adventitia. These biomaterials were initially soft, like healthy blood vessels, and then stiffened using light to mimic vessel scarring in PAH. These 3D-bioprinted models showed that stiffening the microenvironment around female IPAH hPAAFs led to hPAAF activation. On both the protein and gene-expression levels, cellular activation markers significantly increased in stiffened samples and were highest in IPAH patient-derived cells. Treatment with a selective estrogen receptor modulator reduced expression hPAAF activation markers, demonstrating that hPAAF activation is a one pathologic response mediated by estrogen signaling in the vasculature, validating that drugs currently in clinical trials could be evaluated in sex-specific 3D-bioprinted pulmonary artery adventitia models.
DOI: 10.17632/ygkxfngmbx.1
title: Data: Optimization of a combined thermal annealing and isostatic pressing process for mechanical and surface enhancement of Ultem FDM parts using Doehlert experimental designs

description: Raw data form: Optimization of a combined thermal annealing and isostatic pressing process
for mechanical and surface enhancement of Ultem FDM parts using Doehlert
experimental designs. https://doi.org/10.1016/j.jmapro.2022.12.027
DOI: 10.17632/grbmtp2k4w.1
title: Female fibroblast activation is estrogen-mediated in sex-specific 3D-bioprinted pulmonary artery adventitia models

description: Pulmonary arterial hypertension (PAH) impacts male and female patients in different ways. Female patients exhibit a greater susceptibility to disease (4:1 female-to-male ratio) but live longer after diagnosis than male patients. This complex sexual dimorphism is known as the estrogen paradox. Prior studies suggest that estrogen signaling may be pathologic in the pulmonary vasculature and protective in the heart, yet the mechanisms underlying these sex-differences in PAH remain unclear. PAH is a form of a pulmonary vascular disease that results in scarring of the small blood vessels, leading to impaired blood flow and increased blood pressure. Over time, this increase in blood pressure causes damage to the heart. Many previous studies of PAH relied on male cells or cells of undisclosed origin for in vitro modeling. Here we present a dynamic, 3D-bioprinted model that incorporates cells and circulating sex hormones from female patients to specifically study how female patients respond to changes in microenvironmental stiffness and sex hormone signaling. Poly(ethylene glycol)-alpha methacrylate (PEGαMA)-based hydrogels containing female human pulmonary artery adventitia fibroblasts (hPAAFs) from idiopathic PAH (IPAH) or control donors were 3D bioprinted to mimic pulmonary artery adventitia. These biomaterials were initially soft, like healthy blood vessels, and then stiffened using light to mimic vessel scarring in PAH. These 3D-bioprinted models showed that stiffening the microenvironment around female IPAH hPAAFs led to hPAAF activation. On both the protein and gene-expression levels, cellular activation markers significantly increased in stiffened samples and were highest in IPAH patient-derived cells. Treatment with a selective estrogen receptor modulator reduced expression hPAAF activation markers, demonstrating that hPAAF activation is a one pathologic response mediated by estrogen signaling in the vasculature, validating that drugs currently in clinical trials could be evaluated in sex-specific 3D-bioprinted pulmonary artery adventitia models.
DOI: 10.17632/xwjkf4t33b
title: Cold Bokkeveld (CM2) anhydrous lithic clasts

description: The data are SEM-EDS and EPMA analyses of anhydrous lithic clasts in the Cold Bokkeveld CM2 carbonaceous chondrite . They are divided by mineral (olivine, clinopyroxene, plagioclase feldspar, nepheline, merrillite, spinel-group oxide, and Fe-sulphide (pyrrhotite, troilite, pentlandite)) and the clast containing that mineral (526-A to 526-W are clasts in polished block P19526, and 527-A to 527-AK are clasts in polished block P19527). Also listed are nanoSIMS measurements of the oxygen isotopic composition of clast olivine grains, again divided by the clast analysed.

These data are primarily used to: (i) evaluate the affinity of the clasts to known chondrite groups and to anhydrous lithic clasts in the CM meteorites GRV 021536, Murchison, and Shidian, (ii) to assess the degree of metamorphic equilibration of the clasts, and (iii) to calculate metamorphic equilibration via the olivine-spinel geothermometer.
DOI: 10.17632/xwjkf4t33b.2
title: Cold Bokkeveld (CM2) anhydrous lithic clasts

description: The data are SEM-EDS and EPMA analyses of anhydrous lithic clasts in the Cold Bokkeveld CM2 carbonaceous chondrite . They are divided by mineral (olivine, clinopyroxene, plagioclase feldspar, nepheline, merrillite, spinel-group oxide, and Fe-sulphide (pyrrhotite, troilite, pentlandite)) and the clast containing that mineral (526-A to 526-W are clasts in polished block P19526, and 527-A to 527-AK are clasts in polished block P19527). Also listed are nanoSIMS measurements of the oxygen isotopic composition of clast olivine grains, again divided by the clast analysed.

These data are primarily used to: (i) evaluate the affinity of the clasts to known chondrite groups and to anhydrous lithic clasts in the CM meteorites GRV 021536, Murchison, and Shidian, (ii) to assess the degree of metamorphic equilibration of the clasts, and (iii) to calculate metamorphic equilibration via the olivine-spinel geothermometer.
DOI: 10.15468/dl.4t8ksp
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Misgurnus anguillicaudatus",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 539 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003692-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krpg8k
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron canadensis",
 "Country is Jamaica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003695-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25901/05zs-hm14
title: Myall Vale A (Dryland) Flux Data Release 2025_v1
DOI: 10.15468/dl.4x6dy8
title: Occurrence Download

description: A dataset containing 618 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Banksia integrifolia",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 618 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003694-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/byt-16m-9c2
title: Indeterminatae monocot

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5281/zenodo.16062438
title: Spatial Variation of Rise Time and Dwell Time Induced by a Hypervelocity Impact
DOI: 10.3535/ywe-q72-s7d
title: Indeterminatae-dicot

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.jbx4cr
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron canadensis",
 "Country is Lesotho",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003697-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83dkmn
title: Occurrence Download

description: A dataset containing 1690 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erigeron canadensis",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1690 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003696-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjx4um
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Misgurnus anguillicaudatus",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003698-250717081556266/datasets/export for details.
DOI: 10.15468/dl.pqv9j4
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Chondestes grammacus)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 46 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003699-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4sc74
title: Occurrence Download

description: A dataset containing 557336 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ajuga reptans"
 ]
}

 The dataset includes 557336 records from 2624 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003594-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62k9ux
title: Occurrence Download

description: A dataset containing 5510883 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Asyneuma limonifolium (L.) Janch., Athamanta cretensis L., Athyrium distentifolium Tausch ex Opiz, Athyrium filix-femina (L.) Roth, Atractylis humilis L., Atriplex prostrata DC., Atriplex glabriuscula Edmondston, Atriplex halimus L., Atriplex hortensis L., Atriplex laciniata L., Atriplex littoralis L., Atriplex longipes Drejer & Fr., Atriplex oblongifolia Waldst. & Kit., Atriplex patula L., Amaranthaceae, Atriplex nudicaulis Boguslaw, Atriplex sagittata Borkh., Atriplex tatarica L., Atropa belladonna L., Aubrieta deltoidea (L.) DC., Aurinia saxatilis (L.) Desv., Avena barbata Pott ex Link, Avena fatua L., Avena sativa L., Avena sterilis L., Avenella flexuosa (L.) Drejer, Helictochloa bromoides (Gouan) Romero Zarco, Helictochloa cincinnata (Ten.) Romero Zarco, Helictochloa compressa (Heuff.) Romero Zarco, Helictotrichon cycladum (Rech.f. & T.C.Scheff.) Rech.f.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5510883 records from 5689 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003446-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ge3gz7
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Molchina granulata",
 "HasCoordinate is True"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009735-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cdmfx
title: Occurrence Download

description: A dataset containing 662917 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mozambique",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 662917 records from 485 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010333-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1395594.10fu
title: SH1395594.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395595.10fu
title: SH1395595.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.3ysjfm
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"BRA.11.63_2","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 33 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006046-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1395596.10fu
title: SH1395596.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395602.10fu
title: SH1395602.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1395603.10fu
title: SH1395603.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.