cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/wrjt4vgr7x.1
title: Supporting information-2023TC007954-Diverse structural styles of the northeastern Tethyan Himalaya in southern Tibet reveals the early collisional tectonics of India and Asia

description: supporting for a paper to be soon acceped by TECTONICS (2023TC007954), including content introduction, Texts S1-3 and Tables S1-7.
DOI: 10.17632/wrjt4vgr7x.2
title: Supporting information-2023TC007954-Diverse structural styles of the northeastern Tethyan Himalaya in southern Tibet reveals the early collisional tectonics of India and Asia

description: supporting for a paper to be soon acceped by TECTONICS (2023TC007954), including content introduction, Texts S1-3 and Tables S1-7.
DOI: 10.17632/jm6n7by4m5.1
title: A man of science: biography and bibliography of Frederico Leopoldo César Burlamaque (1803-1866)

description: Science in Brazil Empire has several distinguished personalities, but often understudied. This article studies one of these characters in the life and work of Frederico Leopoldo César Burlamaque (1803-1866), brigadier, engineer, naturalist, professor at the Military School and director of the National Museum of Rio de Janeiro. By mid-century, his name was commonplace in the Court's scientific associations and institutions. During the period, he was responsible for several projects dedicated to the modernization of agriculture, some of which were implemented by the imperial government. Based on the analysis of primary documentation and historiography, it is argued that Burlamaque was a central actor in nineteenth-century Brazilian science. The dataset below compiled three types of information about Burlamaque: (1) affiliation to learned societies; (2) his bibliography, separated by books and articles; and (3) the references about his work found in non-Brazilian publications.
DOI: 10.17632/jzn8cg3hx5.1
title: ATAC fragment files for single-nucleus analysis of mouse myenteric plexus glial cells

description: ATAC fragment files and associated tabix index files, output by the 10X Cell Ranger pipeline. Raw FASTQ files, which can be used as input for the Cell Ranger pipeline, are deposited with the NCBI Gene Expression Omnibus with accession GSE184981 (link below).

Sample beginning with "ns_" are derived from 3-dimensional neurosphere cultures. Sample beginning with "glia1_" is derived from glial cells freshly isolated from the longitudinal muscle-myeneric plexus layer of mouse small intestine, as described in Guyer at al (2023), doi: 10.1016/j.celrep.2023.112194.
DOI: 10.17632/628t38x35g.1
title: Field Data

description: The collected data were intended to respond to the research objective aim to gather teachers' views related to incorporating interactive computer-based laboratory simulations (ICBLS) into chemistry instruction. It explores their years of teaching experience and comfort with using technology, assessing the impact of ICBLS on students' performance, retention, engagement, and understanding of chemistry concepts. Teachers were asked to compare traditional teaching methods with ICBLS and evaluate the learning effectiveness among students who used ICBLS versus those who did not. The data examines whether ICBLS affects gender disparities in chemistry lessons and observes changes in students' attitudes toward chemical reactions when using ICBLS. It identifies challenges faced in integrating ICBLS and the types of support necessary for effective implementation. Additionally, it seeks teachers' predictions on the future role of computer simulations in advancing chemistry education and gathers their recommendations for improving ICBLS implementation.
DOI: 10.17632/7v8j98jg63.1
title: LDHU3_15.1730

description: Actin-related protein 3 | Arp3; Leishmania donovani (HU3 strain)
DOI: 10.17632/nbctptt72d.1
title: LDHU3_15.1710

description: Rab-GTPase-TBC domain containing protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/d2zxwb67bd.1
title: LDHU3_15.1680

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/rv3ftmgwpz.1
title: LDHU3_15.1670

description: Actin-like protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/nchzt38w4d.1
title: Lokananthan_Balaji_Fig2-3

description: These Excel files contain raw data for SEC-MALS measurements as well as fluorescence anisotropy/intensity DNA binding isotherms. These data were used in Figures 2 and 3 of the manuscript titled "DNA binding and bridging by human CtIP in the healthy and diseased states"
DOI: 10.17632/b62hnycy59.1
title: Altered DNA methylation underlies monocyte dysregulation and immune exhaustion memory in sepsis

description: Innate immune memory is the process by which pathogen exposure elicits cell-intrinsic states to alter the strength of future immune challenges. Such altered memory states drive monocyte dysregulation during sepsis, promoting pathogenic behavior characterized by pro-inflammatory, immunosuppressive gene expression and emergency hematopoiesis. Epigenetic changes, notably via histone modifications, have been shown to underlie innate immune memory, but the contribution of DNA methylation remains poorly understood. Using an ex vivo sepsis model, we discovered broad changes in DNA methylation throughout the genome of exhausted monocytes, including at several genes implicated in immune dysregulation during sepsis and Covid-19 infection (e.g. Plac8). Methylome reprogramming is driven in part by Wnt signaling inhibition in exhausted monocytes, and can be reversed with DNA methyltransferase inhibitors, Wnt agonists, or immune training molecules. These changes are recapitulated in septic mice following cecal slurry injection, supporting the involvement of DNA methylation in acute and long-term monocyte dysregulation during sepsis.
DOI: 10.17632/5sj8d5vtg2.1
title: Subicular neurons encode concave and convex geometries

description: This repository contains data associated with the article: Sun Y, Nitz DA, Xu X, Giocomo LM. Subicular neurons encode concave and convex geometries. Nature (2024).

All the data was collected by Dr. Yanjun Sun in Dr. Lisa Giocomo's Lab at Stanford University School of Medicine. Due to storage limits, each folder contains data from one set of experiments from five mice, which is sufficient to reproduce, verify, and extend the key findings in the study. The complete dataset is also available upon reasonable request to the corresponding authors.
Contact: yanjuns@stanford.edu
DOI: 10.17632/x8chfn6nwt.1
title: Progressive leaching data of serpentinized mantle rocks from the Troodos Massif and Limassol Forest Complex, Cyprus

description: Data from progressive leaching experiments of serpentinized mantle rocks from the Troodos Massif and Limassol Forest Complex, Cyprus. Data complements submission of manuscript "Multiple episodes of serpentinite alteration revealed by progressive leaching experiments" to Geochimica et Cosmochimica Acta.
DOI: 10.17632/9mxx48n3sc.1
title: Translation of overlapping open reading frames promoted by type 2 IRESs in avian calicivirus genomes

description: Primary data (gel scans)
Figure 3. The mechanism of initiation on the grey teal calicivirus (GTCV) IRES. 
Figure 4. Initiation factor requirements for initiation on the RaCV1 IRES.
Figure 5. Influence of AUG codons and structural elements inserted downstream of the Yn-Xm-AUG motif on RaCV1 IRES-mediated initiation of translation. 
Figure 6. Requirement for subunits of eIF4F for initiation on the RaCV1 IRES. 
Figure 7. Influence of the GNRA tetraloop at the apex of subdomain Ib on RaCV1 IRES function. 
Figure 8. Interaction of Ebp1 with type 2 IRESs. 
Figure 9. Influence of mutations in RaCV1 IRES subdomain Id on binding of Ebp1 assessed by directed hydroxyl radical probing and IRES activity.
DOI: 10.17632/vf9nwcjsjk.1
title: Convective Precipitation Feature (CPFs) of one of the heavy rainfall centers of Guangdong, South China during the pre-flood season from 2016 to 2020

description: Convective Precipitation Feature (CPFs) of one of the heavy rainfall centers of Guangdong, South China during the pre-flood season from 2016 to 2020.
DOI: 10.17632/nxncbzzz38.1
title: Vertical Two-Phase Flow Regimes in an Annulus Image Dataset - Texas A&M University

description: The Vertical Two-Phase Flow Regimes in an annulus Image Dataset, generated at Texas A&M University, presents an extensive collection of high-resolution images capturing various gas-liquid two-phase flow dynamics within a vertical flow setup. This dataset results from meticulous experimental work in the 140 ft Tower Lab, utilizing a combination of water and air flows to simulate real-world conditions and employing high-quality video recordings to document flow regime transitions. Designed to support research in fluid dynamics, machine vision, and computational modeling, the dataset offers valuable resources for developing machine vision models for accurate regime detection and differentiation, enhancing the fidelity of computational fluid dynamics simulations, and facilitating the estimation of critical flow parameters. Despite its comprehensive nature, the dataset notes limitations such as the absence of annular flow regime images and its exclusive focus on vertical flow conditions.
DOI: 10.17632/j233njx65x.1
title: The Evolutionary History of Bees in Time and Space

description: This Mendeley Repository contains data associated with the research article

**** The Evolutionary History of Bees in Time and Space ****

by Eduardo A. B. Almeida, Silas Bossert, et al.

Please refer to the Readme-file of this repository (1_Mendeley_Repository_README.pdf) for detail on the deposited data, illustrations, and code.

For questions and/or concerns please contact one of the two lead authors of the paper under eduardoalmeida [at] usp.br or silas.bossert [at] wsu.edu.
DOI: 10.17632/p2rbf8dm26.1
title: Replication package for Unlocking the potential of inventory management: Integrating digital transformation with firm practices

description: Replication package for Unlocking the potential of inventory management: Integrating digital transformation with firm practices
DOI: 10.17632/6g4dw9jj5s.1
title: LINF_200007600

description: Midasin; Leishmania infantum (strain JPCM5)
DOI: 10.17632/ysw74dbmnt.1
title: LINF_200006300

description: MORN domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/j4y2rgzvt5.1
title: LDHU3_15.1820

description: Proliferative cell nuclear antigen (PCNA); Leishmania donovani (HU3 strain)
DOI: 10.17632/9d4vx6sknh.1
title: LINF_200007800

description: Enkurin domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/nn79ycwbmd.1
title: LINF_200008100

description: Leucine-rich repeat-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/3mh3fy6yjg.1
title: LDHU3_15.1860

description: cAMP specific phosphodiesterase; Leishmania donovani (HU3 strain)
DOI: 10.17632/nf57hw4z67.1
title: LDHU3_15.1850

description: Ribosomal protein S6 | SNU13; Leishmania donovani (HU3 strain)
DOI: 10.17632/svnbzkm2h3.1
title: Traces related to production technology

description: Traces related to the technology of production of artefacts from copper and its alloys. The artefacts come from two sites: Paszowice, Lower Silesia, south-western Poland, and Jodłowno, Pomerania, northern Poland. The archaeological artefacts are dated to the Late Bronze Age and Early Iron Age.
DOI: 10.17632/3r3zsmx34k.1
title: Direct Lenders in the U.S. Middle Market
DOI: 10.17632/8dr67bw4mz.1
title: Experimental data from the manuscript "Post-Return Stroke VHF Electromagnetic Activity in North-Western Mediterranean Cloud-to-Ground Lightning Flashes"

description: The dataset consists of magnetic field recordings of 92 cloud-to-ground flashes analyzed in the manuscript "Post-Return Stroke VHF Electromagnetic Activity in North-Western Mediterranean Cloud-to-Ground Lightning Flashes".
DOI: 10.17632/vhgt4fw2gd.1
title: Clinical characteristics in iRBD (Grant RF-2018-12366746)

description: This dataset includes raw data analyzed and published in the following paper: Sarasso E, Gardoni A, Marelli S, Balestrino R, Zenere L, Castelnuovo A, Malcangi M, Basaia S, Grassi A, Tettamanti A, Canu E, Ferini-Strambi L, Filippi M, Agosta F. Gait Analysis and Magnetic Resonance Imaging Characteristics in Patients with Isolated Rapid Eye Movement Sleep Behavior Disorder. Mov Disord. 2024 Jul 4. doi: 10.1002/mds.29911. Epub ahead of print. PMID: 38962883 
This publication was funded by the Italian Ministry of Health, Grant RF-2018-12366746
DOI: 10.17632/szwzttpvyw.1
title: LINF_200008300

description: Leucine Rich repeat-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/rggnsww87w.1
title: Dataset From Two Pilot Studies: The Using of Emotional and Motivational Factors on Peer Support in Context of Adolescent Smoking Cessation Program

description: This dataset is from two pilot studies that explored the effect of emotional and motivational factors on peer support in the context of adolescent smoking. Although there are available studies about adolescent smoking cessation, there is a limited study that has focused on developing prevention programs in classroom settings. Two datasets from each pilot study have collected using an online survey technique (n=102). Data collection procedures using convenience sampling from grade XI high schools student in Palembang City, The Capital of South Sumatera Province, Indonesia. We use descriptive statistics to explore the phenomenon in classroom settings in study I (n=31). In converse, we use logistic regression to predict peer support in study II (n=71). This dataset is available in two types according to the origins of respondents: from the same high school and from the various high school. The dataset is unique as there are no publicly available databases on school-based smoking prevention programs using classroom settings. It can be useful to link personal factors and daily interactions to prevent smoking behavior.
DOI: 10.17632/j4bwjsyggc.1
title: Correlation between training load, performance, and perceptions of adolescent competitive swimmers

description: Objective: We aimed to investigate differences in training load, performance, perceptions, and recovery between mesocycles and to investigate the correlation between these variables in adolescent competitive swimmers. 

Sample: Nineteen young male and female swimmers between 12 and 18 years old were monitored for 12 weeks. 

Outcomes: Training load was registered after every training session, and functional performance (squad jump, bench press, flexibility, sense of position), swim performance (100m front crawl sprint time, number of strokes, swim velocity, stroke frequency, distance per stroke, and stroke index), and training related perceptions (well-being, heaviness, tiredness, discomfort, and pain) were assessed weekly. A mathematical model was used to assess percentage of recovery. For that, we dichotomized each variable as recovered if the test value was better or equal to the previous week or not recovered if the test value was worse than the previous week. Then, we averaged these values according to subgroups to calculate the percentage of recovery of functional and swim performance, and sprint related perceptions. Lastly, we calculated the mean recovery from these subgroups to obtain the total recovery status.
DOI: 10.17632/nydzbpbk36.1
title: Reliability of lithium di-silicate and monolithic zirconia ceramics with different thickness cemented to a dentin analogue material

description: The study assessed the reliability of disk-shaped specimens made with two monolithic zirconia (5Y-TZP and 3Y-TZP) and a Lithium Disilicate, with thicknesses of 0.5 mm, 1.0 mm, and 1.5 mm cemented on an epoxy-resin substrate, through step-stress accelerated life testing (SSALT). Step-stress accelerated life testing (SSALT) comprises 18 specimens distributed into three profiles: mild (n=9), moderate (n=6), and aggressive (n=3). Each profile started at 300 N and finished at 3,000 N. The mild profile was designed with 200 N load increase at each 20,000 cycles up to 320,000 cycles; the moderate profile was designed with a 250 N load increase each 15,000 cycles up to 195,000 cycles; the aggressive profile had 300 N load increase at each 10,000 cycles up to 110,000 cycles. The data were analyzed at 90% two-sided confidence interval using the software Synthesis 9, Alta Pro, Reliasoft, Tucson, AZ, USA. 3Y-TZP 1.5mm was the only group to have specimens that survived. The beta value (β) was ˂1 for 3Y-TZP, suggesting early damage in the 7 specimens that failed; β ≈ 1 for Lithium Disilicate 1.0 mm and 1.5 mm, 5Y-TZP 1.0 mm and 1.5 mm, 3Y-TZP 0.5 mm and 1.0 mm suggested stability of failure rate over time; β ˃ 1 for Lithium Disilicate 0.5 mm and 5Y-TZP 0.5 mm suggested increased failure rate over time. Lithium Disilicate ceramic demonstrated high reliability irrespective of thickness as well as 3Y-TZP 1.5 mm and 0.5 mm, but reliability was significantly reduced in 3Y-TZP 1.0 mm (86%). No significant difference was observed among the 3 thicknesses of 5Y-TZP groups. Lithium Disilicate 0.5 mm and 3Y-TZP 1.0 mm groups were not different from 5Y-TZP 0.5mm and 1,5 mm. The contour plot of Weibull modulus (m) versus characteristic strength, using load at failure during fatigue, showed that group 3Y-TZP 1.5 mm presented the highest load at failure followed by 3Y-TZP 0.5 mm. There was no difference among the Lithium Disilicate groups. The 5Y-TZP 1.0 mm showed the lowest values, followed by 5Y-TZP 0.5 mm, 5Y-TZP 1.5 mm and 3Y-TZP 1.0 mm which were not different from each other. In summary, 5Y-TZP presented lower reliability than the other ceramics, particularly when compared to all Lithium Disilicate groups and 3Y-TZP 0.5 mm and 1.5 mm. There was significant intra-group reduction in reliability and characteristic strength in intermediate thickness (1.0 mm) of 3Y-TZP and 5Y-TZP. Fatigue behavior of Lithium Disilicate ceramic was not markedly affected by thickness.
DOI: 10.17632/cjkhkn7fd4.3
title: Increased PFOS toxicity and accumulation is associated with perturbed prostaglandin metabolism and increased organic anion transport protein expression

description: Perfluorooctanesulfonic acid (PFOS) is a widespread environmental pollutant with a half-life of 5.4 years in humans. PFOS is associated with various adverse health outcomes, including obesity, non-alcoholic fatty liver disease (NAFLD), and type 2 diabetes. Male and female Cyp2b-null and humanized CYP2B6-transgenic (hCYP2B6-Tg) mice generated in our laboratory were treated with 0, 1, or 10 mg/kg/day PFOS for 21 days, and it was found that PFOS was retained at greater concentrations in the serum and liver of hCYP2B6-Tg mice than Cyp2b-null mice providing a new model for analyzing the mechanisms behind PFOS retention and elimination. The purpose of this study was to use -omic data (lipidomics and transcriptomics) to help determine novel mechanisms behind PFOS retention. Hepatic targeted lipidomics by LC-MS/MS for distinct free and total oxylipins and hepatic transcriptomics from PFOS treated Cyp2b-null and hCYP2B6-Tg mice were performed in addition to evaluating basic serum and liver parameters associated with liver retention such as albumin, and serum and liver FABP. Lipidomic PCA analysis indicates that several oxylipins, including prostaglandins, thromboxanes, and docosahexaenoic acid metabolites are associated or inversely associated with PFOS toxicity. FABPs are moderately associated with toxicity, but also inversely associated with toxicity in males. Thus, their ability to bind PFOS may have immediate benefits but long term problems associated with bioaccumulation. Last, differential gene expression analysis following RNAseq was performed with EdgeR, and differentially expressed genes were associated with changes in GO terms and KEGG pathways in the PFOS-treated mice. Several pathways are associated with retention and toxicity. Most interestingly, KEGG and PCA analysis indicates that several transporters are associated with increased retention probably due to increased uptake. The strongest association are Oatp1a4-6 genes, which are repressed in the Cyp2b-null mice - potentially limiting uptake. Not much work (or no work) has been done previously to study their role in PFOS transport. In summary, Cyp2b-null and hCYP2B6-Tg mice provide unique models for studying PFOS retention and toxicity. Our research indicates that poor DHA and prostaglandin metabolism is associated with toxicity and several, especially OATP transporters are associated with hepatic retention. Data enclosed includes serum, liver parameters, liver oxylipins, and liver RNAseq data from UT, 0, 1, 10 mg/kg/day PFOS-treated male and female, Cyp2b-null and humanized CYP2B6-transgenic mice.
DOI: 10.17632/ng2k62crcg.2
title: mePAP - Low cost, Multipurpose, Equitable, Positive Airway Pressure Device

description: The mePAP consists of a simple 3D printed housing, with a 12V brushless DC motor blower unit, a motor driver, and pressure sensor encased inside. Some current devices have an added humidification unit to warm the air to increase comfort levels. The devices are fully functional without this addition, and hence it was removed to keep costs low, while keeping comfort high. The mePAP is controlled through an ergonomic app, making it easier to set the pressures especially during the night. The app also allows for data collection, with open access to breathing data throughout the night, which is currently withheld on many PAP devices. Current PAP devices range from NZD $800-$2500, with the mePAP only NZD$250. This reduction in cost makes it more equitable for lower-socio economic users, who are more susceptible to sleep apnea. 

No current PAP devices to date connect to, or utilize external sensor systems, which ensures this project is making a step forward from current state-of-the-art. The additional mini sensor at the mouthpiece provides another level of accuracy with a feedback response implemented to ensure the pressure the subject receives is as close to that set, along with giving more accurate measurements to base BiPAP and APAP control from. This mini sensor unit has been designed to fit at the end of the hose and connect to the mask with ease, being small and light weight to minimise disruptions to the user. 

Files are split into two main sections: Code; and Hardware. Code files include the mobile phone app for control, ESP32 code for CPAP, BiPAP, APAP and mini sensor control, and Matlab code for plotting of results.
Hardware comprises of 3D printed components and printed circuit boards (PCB's). Both the main mePAP housing and the additional mini sensor 3D printed components are available as SolidWorks parts and STL files. SolidWorks files can be adapted to suit user needs, or STL files for direct 3D printing as is. Hardware PCB's contains the control PCB and pressure sensor PCB. Both can be adapted as required.