DOI: 10.22002/yw0t4-az064
title: JV3579_Polara_Mag27.5

description: JV3579 Legionella thyA ΔdotF(May10th, 2017)
description: <strong>Tilt Series Date:</strong> 2017-05-10</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> TOMO3D</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal at F30, Caltech.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine. Scrape cells off a plate, dissolve in the media, adjust the cell density to 0.6 and make a dilution series. Start O/N culture with all of them and freeze cells next day from the one in early stationary phase that is OD ~ 3.0. This time cell density was ~2.9</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for the JV3579 strain at OD~ 2.9, cell density was increased to 2x. Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-05-10-88/rawdata/</p>JV3579_20170511a0041.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-05-10-88/rawdata/JV3579_20170511a0041.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV3579_20170511a0041_SIRT_1k.rec,  Reconstruction (Pixel Size 0.0 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-05-10-88/3dimage_105695/JV3579_20170511a0041_SIRT_1k.rec"
        > <i class="download icon"></i> Download </a></p>

        JV3579_20170511a0041.ali,  384.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-05-10-88/file_22181/JV3579_20170511a0041.ali"
        > <i class="download icon"></i> Download </a></p>

        JV3579_20170511a0041.tlt,  432.0 B  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-05-10-88/file_22182/JV3579_20170511a0041.tlt"
        > <i class="download icon"></i> Download </a></p>

        JV3579_20170511a0041_fid.tlt,  432.0 B  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-05-10-88/file_22183/JV3579_20170511a0041_fid.tlt"
        > <i class="download icon"></i> Download </a></p>

        T4SS.mod,  1.2 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-05-10-88/file_22184/T4SS.mod"
        > <i class="download icon"></i> Download </a></p>

        T4SS_2k.mod,  1.2 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-05-10-88/file_22185/T4SS_2k.mod"
        > <i class="download icon"></i> Download </a></p>