cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rx8jp7chkv
title: The organic matter type in the shale rock samples assessed by FTIR-ATR analyses

description: The aim of the paper was to show possibilities of applying the relatively new, and quick FTIR molecular vibrational spectroscopy with attenuated Total Reflectance – aTR technique – in order to correlate extracted organic matter samples of different types with its infrared spectra. The technique was employed for 22 shale rock samples of the Carpatian Flysch – mainly from Menilite Beds, Istebna Beds and Verovice Beds. They were selected on the basis of their different maturity levels – from immature ones through all stages of the oil window, up to the early gas window phase of generating hydrocarbons. The Rock-Eval analysis and optical microscope techniques (organic petrography and vitrinite reflectance), were the methods chosen to confirm the samples classification assessment, in terms of kerogen typing and samples maturity. The major kerogen types in these source rocks include Type I, II and III. In consequence the measurement and data analysis (like choosing analytical bands and parameterization) for distinguishing between different kerogen types (I-III) should be possible by the proposed FTIR-ATR technique. key words: shale rock analysis, organic matter FTiR analysis with aTR mode, vitrinite reflectance, Rock-eval and petrographical analysis. Typ substancji organicznej w łupkach, a jej widma spektroskopowe FTIR-ATR artykuł przedstawia możliwości zastosowania relatywnie nowej, szybkiej odmiany spektroskopii w podczerwieni FTIR – w wydaniu z wykorzystaniem techniki ATR (Attenuated Total Reflectance) – bazującej na zjawisku tłumio-nego całkowitego odbicia. Celem jest korelacja próbek kerogenu reprezentujących różne jego typy z ich widmami w podczerwieni. Przebadano 22 próbki skał formacji łupkowych fliszu karpackiego. Były to łupki menilitowe, warstwy istebniańskie oraz wierzowskie, wyselekcjonowane w taki sposób by reprezentować różne stopnie dojrza-łości materii organicznej – od niedojrzałych poprzez okno ropne aż do okna gazowego. w celu potwierdzenia ich klasyfikacji przeprowadzono badania pirolizy Rock-eval, użyto mikroskopowych metod petrograficznych jak analiza refleksyjności witrynitu oraz petrografia składników organicznych. stwierdzono, iż poszczególne próbki przynależą do kerogenu typu i, ale także ii oraz iii. Na podstawie przeprowadzonych dotychczas badań oraz doniesień literatu-rowych stwierdzono, iż rozróżnienie takie było możliwe także z użyciem zaproponowanej w pracy odmiany metod spektroskopii w podczerwieni – FTiR-aTR. jednak w celu bardziej szczegółowego poznania ograniczeń metody oraz stwierdzenia zakresu jej stosowalności konieczne jest przeprowadzenie badań na większej populacji próbek. słowa kluczowe: analizy próbek formacji łupkowych, analizy materii organicznej metodą FTiR-aTR, refleksyjność witrynitu, analizy Rock-Eval.
DOI: 10.17632/bpnhbj34ch
title: Data for: In-Situ Approach for Thermal Energy Storage and Thermoelectricity generation on the Moon: Modelling and Simulation

description: 1) Set stimulation settings and run the script 2) Tune Advanced Model and run the script 3) run save_results to save the results
DOI: 10.17632/f7hydbkgw4
title: Data for: Age-related decline in disengaging spatial attention in physiological aging (Pedale et al. 2024) Brain Sciences

description: ANT DESCRIPTION 
Each trial consisted of the presentation of an initial black fixation cross (on a grey background) for a duration ranging from 400 to 1600 ms. After this interval, an attentional cue could be presented for 100 ms. The cue could either replace the fixation point (i.e., “central cue” condition), be presented both above and below the fixation point (i.e., “double cue” condition), or be presented either above or below the fixation point (i.e., “spatial cue” condition). Otherwise, no cue was presented (i.e., “no cue” condition). After a short fixation period of 400 ms, the target appeared. This consisted of a central black triangle-arrow presented above or below the central fixation point, vertically aligned with the centre of the display. The target triangle-arrow could be oriented either on the left or right side. The target triangle-arrow could be presented along with black squares (“neutral” trials) or along with flanking triangle-arrows oriented toward the same (“congruent” trials) or the opposite direction (“incongruent” trials). The participants were asked to discriminate the left vs. right target orientation by pressing as quickly as possible one of two response keys, within a temporal window of 1700 ms.

THE DATA FILE

The data file (ANT_data.xls) contains the data from the 60 participants. 
Each row represent a single trial.

Description of each column of the ANT_data file:

ID: Unique anonymized participant identifier. 
AGE: Age of participant (in years).
CUE: Cue type (“No cue”, “Central Cue”, “Spatial Cue”, “Double Cue”).
FLANKER: Flanker type (“Congruent”, “Incongruent”, “Neutral”).
RT: Response time in milliseconds. The cell is empty in case of no response within the time window of 1.7 sec.
ACC: Accuracy value (1 for a correct response, and 0 for an incorrect response).
DOI: 10.17632/x2w58n5t4j
title: Pervasive Mobile Payment Adoption and the Decline of Cashiers’ Mathematical Skills

description: This data set helps to investigate how noncash payment affect the rounding up probability of the next cash transaction, a proxy for cashier's mathematical skills, as well as its impact on transaction time of rounded up transactions that require calculations.
The files "main.dta" and "main.do" reveal the main finding. The greater the number of consecutive noncash transactions, the lower the probability of rounding up for the next cash transaction. 
The files "round up possibility.dta" and "round up possibility.do" apply another approach to support this argument.  I construct pairs of transactions that have N (N=2, 3, ..., 10) consecutive cash transactions (noncash=0) or noncash transactions (noncash=1) before. For example, N3=1 means that for this transaction of interest, there are three noncash transactions before it, vice versa, N3=0 means that there are three cash transactions before it. Comparing in pairs with consecutive cash transactions, noncash payment series lowers the probability of rounding up of the next cash transaction.
The files "transaction time.dta" and "transaction time.do" show the time-increasing effect of noncash transactions on the following rounded up transaction by comparing the unit transaction time in pairs.
roundup is a binary variable.  It equals to 1 if the transaction is rounded up.
noncashseries is the number of consecutive noncash payments.
service is the number of consecutive services of a cashier in his or her shift.
item is the number of products purchased.
One may argue that the number of cash or noncash series is endogenous as cashiers may intentionally imply customers to pay in cash or noncash. Therefore, we use a Bartik-type IV, iv, defined as the cash proportion of the whole store before a transaction. Individual cashier has no power to manipulate the population cash-using proportion. The cash proportion affects the noncashseries but has no effect on round up probability.
peakhours, weekends and holidays are subsamples to capture a relatively busy working conditions.
DOI: 10.17632/5bynwpfh57
title: University Needs (Stage 1)

description: Developing and validating a University Needs Instrument to Measure the Psychosocial Needs of University Students
DOI: 10.17632/n6vxdhhmrz
title: Marine epibenthic functional diversity on Flemish Cap (northwest Atlantic)—Identifying trait responses to the environment and mapping ecosystem functions

description: Aim: To characterize the functional diversity and selected ecological functions of marine epibenthic invertebrate communities at the ecosystem scale and to evaluate the relative contributions of environmental filtering, including bottom-contact fishing, and competitive interactions to benthic community assembly. Location: Flemish Cap, an ecosystem production unit and fishing bank in the high seas of the north-west Atlantic Ocean. Methods: Through the use of Hierarchical Modelling of Species Communities (HMSC), we have explored seven community response traits to the environment applied to 105 epibenthic species and evaluated the influence of such traits on the community assembly processes. Assumed bioturbation, nutrient cycling and habitat provision functions, linked to individual or a combination of biological traits, were mapped using random forest modelling. Results: Functional richness within benthic communities reached an asymptote for trawl sets with roughly more than 30 species. Assemblages on top of the Flemish Cap (&lt;500 m depth) were characterized by higher biomass of small- and medium-sized species with short life spans, whereas large species with longer life spans and broadcast spawners were dominant in the deeper assemblages (500–1,500 m depth). The amount of variation explained by the species’ responses to the covariates mediated by the traits was relatively high (25%) indicating their relevance to community assembly. Communityweighted mean trait values changed with depth and physical oceanographic variables, indicating that environmental filtering was occurring. Interspecific interactions, as inferred from the random effect at the sample level, accounted for 16.3% of the variance in the model, while fishing effort explained only 5.2% of the variance but conferred strong negative impacts for most species. Main conclusions: Our results suggest that while bottom-contact fishing impacts have an effect on functional diversity, changes to the physical oceanography of the system are likely to have more profound impacts. The maps of benthic functioning can aid assessments of ecosystem impacts of fishing.
DOI: 10.6084/m9.figshare.16923131.v1
title: Complete Forcing Numbers of Random Multiple Hexagonal Chains

description: Let <i>G</i> be a simple connected graph with vertex set <i>V</i>(<i>G</i>) and edge set <i>E</i>(<i>G</i>) that admits a perfect matching <i>M</i>. A forcing set of <i>M</i> is a subset of <i>M</i> contained in no other perfect matchings of <i>G</i>. The minimum cardinality of forcing sets is the forcing number of <i>M</i>. A complete forcing set of <i>G</i>, recently introduced by Xu et al. [Complete forcing numbers of catacondensed hexagonal systems, <i>J</i>. <i>Combin</i>. <i>Optim</i>. 29(4) (2015) 803-814], is a subset <i>S</i> of <i>E</i>(<i>G</i>) on which the restriction of any perfect matching <i>M</i> of <i>G</i> is a forcing set of <i>M</i>. A complete forcing set of the smallest cardinality is called a minimum complete forcing set, and its cardinality is the complete forcing number of <i>G</i>, denoted by <i>cf</i>(<i>G</i>). In this paper, we present the complete forcing sets and complete forcing number of random multiple hexagonal chains.
DOI: 10.6084/m9.figshare.28718753.v1
title: Genotype Key for Locomotor Dataset

description: This spreadsheet contains information regarding the layout and genotypes of all mosquitoes utilized in the locomotor activity recording. Mosquito sex and genotype are included for all mosquitoes which survived to the end of the recording period.
DOI: 10.6084/m9.figshare.1559052.v1
title: BBC Election data 2015 & UK economic status

description: This table provides the voting results for the UK general election 2015, as scraped from the BBC website. It also includes UK income statistics (employed, self-employed, pension, total income) for each constituency (2013) taken from the ONS. It also includes child poverty for each constituency as reported in the Guardian (2012 data). <br>There are several columns that detail constituency name - these have each come from a different data source and have been left in just in case there are errors in the alignment of constituency names across datasets.
DOI: 10.6084/m9.figshare.19180817.v1
title: Supplementary Material for: The Origin of Epithelium with Low-Grade Atypia in Early Gastric Cancer

description: <b><i>Introduction:</i></b> <i>Helicobacter pylori</i> (HP) infection causes chronic inflammation and atrophy of the gastric mucosa and thus a high risk of gastric cancer (GC). With the increasing success of HP infection treatment, a larger number of GCs that develop after eradication can be assessed. Several studies have shown that epithelium with low-grade atypia (ELA) is a frequent characteristic of these GCs, but the origin of this condition is unknown. In this study, we compared the mucin phenotype, cellular proliferation, and p53 staining in ELA and cancerous tissues obtained from patients with GC with and without HP eradication. <b><i>Methods:</i></b> The study population consisted of 23 patients with GC that developed after successful HP eradication therapy (eradicated group) and 24 patients with GC and HP infection (infected group). The prevalence of ELA was determined by hematoxylin and eosin staining. Tumor tissue and ELA samples were further analyzed by immunohistochemical staining for Muc5AC, Muc2, p53, and Ki-67. <b><i>Results:</i></b> The ELA coverage rate was significantly higher in the eradicated group than in the infected group. Gastric-type mucin was frequently expressed by the ELA, and the mucin phenotypes of ELA and cancerous areas differed in 75% of cases. The Ki-67 labeling index was consistently lower in ELA than in the cancerous mucosa. Fourteen of 21 (66.7%) cancerous lesions, but only 3 ELA samples, were p53-positive. <b><i>Conclusion:</i></b> In most cases, ELA on the surfaces of GCs seems to have originated from normal gastric cells, not from cancer cells.
DOI: 10.17632/tkmxmbj2vt
title: Data for: Telemedicine in Chronic Care -A Case of Diabetes Management

description: The data is used for k-mean clustering for dividing the component of diabetes in to homogeneous groups.
DOI: 10.15468/dl.jwcg8x
title: Occurrence Download

description: A dataset containing 7510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Erebia ligea (Linnaeus, 1758)"
 ]
}

 The dataset includes 7510 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009180-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/2br3zp79m3
title: MiRNA and menstrual cycle

description: Study question: Do ovarian hormone levels influence cell-free or “circulating” microRNA (cf-miRNA) levels across the menstrual cycle?
Summary answer: This exploratory study suggests that hormonal levels fluctuations throughout the menstrual cycle may alter cf-miRNAs levels. 
Study design, size, duration:  A prospective, monocentric study conducted between March and November 2021. Since this a pilot study, sample size was based on feasibility as well as previous, similar human studies conducted in different tissues. A total of 20 subjects were involved in the study.
Participants/materials, setting, methods: We conducted an exploratory study where blood samples were collected from sixteen eumenorrheic females in the early follicular phase, the ovulation phase and the mid-luteal phase of the menstrual cycle. Ovarian hormones oestrogen, progesterone, luteinizing hormone (LH) and follicle-stimulating hormone (FSH) were measured in serum by electrochemiluminescence. The levels of 179 plasma-enriched miRNAs were profiled using a PCR-based panel, including stringent internal and external controls to account for the potential differences in RNA extraction and reverse-transcription stemming from low-RNA input samples. 
Main results and the role of chance: This exploratory study suggests that cf-miRNAs may play an active role in the regulation of the female cycle by mediating the expression of genes fluctuating with hormonal changes. Linear mixed-models adjusted for the relevant variables showed numerous associations between phases of the menstrual cycle, ovarian hormones and plasma cf-miRNA levels. Validated gene targets of the cf-miRNAs varying with the menstrual cycle were enriched within the female reproductive tissues and primarily involved in cell proliferation and apoptosis.
DOI: 10.6084/m9.figshare.23507385.v1
title: <strong>Differential effects of reward and punishment on reinforcement-based</strong> <strong>motor learning and generalization</strong>

description: Group 1 is for the reward while group 2 is for the punishment. A is short for reach angle. V is short for movement variability. LR1 is short for learning rate during the initial learning. LR2 is short for learning rate during the generalization test. LE1 is short for learning extent during the initial learning. LE2 is short for learning extent during the generalization test. <br>
DOI: 10.6084/m9.figshare.25125488.v2
title: Supplementary_materials_table2.docx

description: Summary of the analysis
DOI: 10.6084/m9.figshare.18133799.v1
title: Supplementary Material for: Effect of Expanded Hemodialysis with Theranova® in Patients with COVID-19

description: <b><i>Introduction:</i></b> Cytokine storm control is the main target for improving severe COVID-19 by using immunosuppressive treatment. Effective renal replacement therapy (RRT) could give us an advantage removing cytokines in patients with RRT requirements superimposed on COVID-19. <b><i>Methods:</i></b> This is a prospective observational study in COVID-19 patients who required hemodialysis (HD). Patients were assigned to online hemodiafiltration (OL-HDF) and expanded HD (HDx) according to Brescia group recommendations. We measured several cytokines, β2 microglobulin and albumin levels pre/post-dialysis and on 1st–2nd week. We compared levels among both techniques and control group (HD without COVID-19). <b><i>Results:</i></b> We included 26 patients: 18 with COVID-19 on RRT (5 of them had acute kidney injury [AKI]) and 8 controls. We confirm higher cytokine levels in COVID-19 patients than controls and even higher in patients with AKI than in those with chronic kidney disease. Most cytokines raised during HD session, except IL-10 and TNFα. IL-10 was eliminated by any dialysis technique, while clearance of TNFα was higher in the HDx group. HDx achieved a deeper normalization of cytokines and β2 microglobulin reduction. Mortality was higher in the OL-HDF group than the HDx group. <b><i>Discussion:</i></b> Not all cytokines behave equally along HD session. The following characteristics should be taken into account, such as intrinsic kinetic profile during a HD session. HDx seems to get better performance, probably due to the combination of different factors; however, we did not reach statistical significance due to the small sample size, dropout, and reduction of AKI incidence during the 2nd pandemic wave. <b><i>Conclusion:</i></b> HDx appears to provide better clearance for TNFα and β2 microglobulin during HD session and associates lower mortality. We propose the HDx technique for COVID-19 patients with RRT requirements since it seems to be safe and more effective than OL-HDF. Further studies are still needed, but we hope that our preliminary data may help us in future pandemic waves of SARS-CoV-2 or other viruses still to come.
DOI: 10.6084/m9.figshare.4751320.v2
title: Electroencephalogram-based Decoding Cognitive States usingConvolutional Neural Network and Likelihood Ratio Based Score Fusion

description: This EEG data is for an event related design which is made for a simple visual task.
DOI: 10.17632/433rdvcr79
title: LINF_160016400

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/cnkw7cdg4k
title: Dermbio Research Letter Supplementary Material

description: Supplementary Material for "Machine Learning Model for Predicting Outcomes of Biologic Therapy in Psoriasis"
DOI: 10.17632/ngwwp6cvtv
title: Tipping point in alpha-synuclein-membrane interactions from stable protein-covered vesicles to amyloid aggregation

description: HSQC_20C and HSQC_t37C folder contains raw 1H-15N HSQC data acquired on samples containing a-synuclein and SUVs at different lipid-to-protein (L/P) ratios at 20 and 37 degrees C. DiffusionNMR contains diffusion NMR raw data acquired on a-synuclein and SUVs at different L/P ratios at 20 degrees C. The data are analyzed, presented and discussed in Makasewicz et al. (https://doi.org/10.1016/j.xcrp.2024.102309). 
The folder matlabScript contains all Matlab codes used to simulate NMR spectra, which are shown in the Supplemental Information.
DOI: 10.17632/x9tw3knwsd
title: Immunometabolic Signatures Predict Risk of Progression to Sepsis in COVID-19

description: We accurately quantified 110 metabolites using targeted metabolomics, and 13 cytokines/chemokines in plasma samples of 121 COVID-19 patients with different levels of severity, and 37 non-COVID-19 individuals. Analyses revealed an integrated host-dependent dysregulation of inflammatory cytokines, neutrophil activation chemokines, glycolysis, mitochondrial metabolism, amino acid metabolism, polyamine synthesis, and lipid metabolism typical of sepsis processes distinctive of a mild disease. Dysregulated metabolites and cytokines/chemokines showed differential correlation patterns in mild and critically ill patients, indicating a crosstalk between metabolism and hyperinflammation.
DOI: 10.17632/7bsxtddwfh
title: Dataset of Open Source Software

description: A specific dataset of Open Source Software extracted from both SourceForge and Github repositories that may be served by recommender systems in the evaluation of algorithms
DOI: 10.6084/m9.figshare.26090842.v1
title: Appendix 1: Data analysed in the study; Appendix 2: R Script; Supplementary document

description: Mining is a source of great economic activities that contribute to employment, GDP and growth. However, mining is also associated with adverse impacts on the environment, and human health conditions. Although enough evidence is provided on these negative impacts, we know little on how mining activities may impact on academic performance of the youth. Here, we demonstrate significant negative correlations between mining and academic performance of high school learners in South Africa. We believe this study is a contribution that has practical applications for policy makers.
DOI: 10.17632/c3r9chw9rb
title: Comprehensive single-cell genome analysis at nucleotide resolution using the PTA Analysis Toolbox

description: We developed a comprehensive bioinformatic workflow, called the PTA Analysis Toolbox (PTATO), to accurately detect single base substitutions, insertions-deletions (indels) and structural variants in PTA-based WGS data. PTATO includes a machine learning approach and filtering based on recurrency to distinguish PTA-artefacts from true mutations with high sensitivity (up to 90%), outperforming existing bioinformatic approaches. Our results show that PTATO enables studying somatic mutagenesis in the genomes of single cells with unprecedented sensitivity and accuracy.
DOI: 10.17632/pjxp3d2vcj
title: results for the mutiple linear odering problem

description: Results of the \delta and Maxdiff measures for the m-farthest-sum, m-farthest min and VNS