cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/4r6568xcpw
title: More than just hitchhikers: a survey of bacterial communities associated with diatoms originating from sea turtles

description: These data relate to the manuscript Filek et al. 2022 "More than just hitchhikers: a survey of bacterial communities associated with diatoms originating from marine reptiles"  available at BioRxiv 2022.04.19.488760; doi: https://doi.org/10.1101/2022.04.19.488760 
and Filek et al. 2022 "More than just hitchhikers: a survey of bacterial communities associated with diatoms originating from sea turtles"  FEMS Microbiology Ecology, fiac104; doi:10.1093/femsec/fiac104

Abstract:
Diatoms and bacteria are known for being the first colonizers of submerged surfaces including the skin of marine reptiles. Sea turtle carapace and skin harbour diverse prokaryotic and eukaryotic microbes, including several epizoic diatoms. However, the importance of diatom-bacteria associations is hardly investigated in biofilms associated with animal hosts. This study provides an inventory of diatoms, bacteria, and diatom-associated bacteria originating from loggerhead sea turtles using both metabarcoding and culturing approaches. Amplicon sequencing of the carapace and skin samples chloroplast gene rbcL and 16S rRNA gene detected in total 634 diatom amplicon sequence variants (ASVs) and 3,661 bacterial ASVs indicating a high diversity. Cultures of putative epizoic and non-epizoic diatoms contained 458 bacterial ASVs and their bacterial assemblages reflected those of their host. Diatom strains allowed for enrichment and isolation of bacterial families rarely observed on turtles, such as Marinobacteraceae, Alteromonadaceae, and Alcanivoracaceae. When accounting for phylogenetic relationships between bacterial ASVs, we observed related diatom genera might retain similar microbial taxa in culture, regardless of the turtle's skin or carapace source. These data provide deeper insights into the sea turtle-associated microbial communities, and reveal the potential of epizoic biofilms as a source of novel microbes and possibly important diatom-bacteria associations.
DOI: 10.17632/xt4h8whtng
title: Supplemental Material - Overall and subgroup prevalences of non-infectious uveitis among patients with hidradenitis suppurativa

description: Supplemental Material - Overall and subgroup prevalences of non-infectious uveitis among patients with hidradenitis suppurativa

Authors: Bria Midgette, BS, Andrew Strunk, MA, Robert Sabat MD, PhD, Kerstin Wolk, PhD, Amit Garg, MD
DOI: 10.6084/m9.figshare.19518133.v4
title: Tonnages, durations of ore formation, durations of magma cycles associated with mineralization, Sr/Y values of magmas and depths of formation of porphyry Cu-Au deposits

description: This table provides a summary of Cu and Au endowments of ~120 porphyry Cu-Au deposits, durations of ore formation, durations of magma cycles associated with mineralization, Sr/Y values of magmas and depths of formation of porphyry Cu-Au deposits<br>
DOI: 10.6084/m9.figshare.27868575.v1
title: Data and R-code: Livestock shifts lepidopteran herbivore community due to intraguild elimination in Mediterranean agroforestry systems

description: Data and the example R-code of the publication: "Livestock shifts lepidopteran herbivore community due to intraguild elimination in Mediterranean agroforestry systems"
DOI: 10.17632/gvt64rndnd
title: A visual working memory dataset collection with bootstrap Independent Component Analysis for comparison of electroencephalogram preprocessing pipelines

description: Here we present an electroencephalographic (EEG) collection of 71-channel datasets recorded from 14 subjects (7 males, 7 females, aged 20-40 years) while performing a visual working memory task. These data were also used in (Delorme, Palmer, Onton, Oostenveld, Makeig. “Independent EEG sources are dipolar.” PLoS One, 2012). Here, each dataset includes a set of 150 Independent Component Analysis (ICA) decompositions by Extended Infomax using RELICA, each on a bootstrap resampling of the data. Independent components (ICs) are clustered within subject and thereby associated with a quality index (QIc) measure of their stability to data resampling. Sets of single ICA decompositions obtained after applying Principal Component Analysis (PCA) to the data to perform dimension reduction retaining (85%, 95%, 99%) of data variance are also included, as are the positions of the best fitting equivalent dipoles for ICs whose scalp projections are compatible with a compact brain source. These bootstrap ICs may be used as benchmarks for different data preprocessing pipelines and/or ICA algorithms, allowing investigation of the effects that noise or insufficient data have on the quality of ICA decompositions.
DOI: 10.6084/m9.figshare.22958861.v1
title: Quantitative Assessment of Grasping Strength in Platyrrhine Monkeys

description: Data associated with the manuscript "Quantitative Assessment of Grasping Strength in Platyrrhine Monkeys" by Young et al. Data include in vivo grasping force data from squirrel monkeys and marmosets (Study1_GraspingForceData.xlsx), digital flexor muscle physiological cross-sectional data from a variety of platyrrhines (Study2_MuscleData.xlsx), and the phylogenetic tree of the platyrrhines for which muscle data were collected (Study2_PlatyrrhineTree.nex). <br>
DOI: 10.6084/m9.figshare.27079996.v1
title: Tools for Assessment of Vocational Interest in Indonesia: Scoping Review

description: This dataset is part of a scoping review conducted to identify and evaluate tools used for assessing vocational interests within the Indonesian context. The initial database contains a total of 2,238 articles published between 2014 and 2024. After a thorough screening process based on predefined inclusion and exclusion criteria, 17 articles were deemed relevant for the review.<b>Inclusion Criteria</b>:Document Type: Only peer-reviewed articles (excluding book chapters, books, web content, or reports).Publication Date: Articles published between 2014 and 2024.Topic: Articles related to vocational interest.Approach: Articles that used a quantitative approach.Measurement Tools: Articles that employed instruments to measure vocational interest.Validity and Reliability: Articles that provided evidence of at least one form of validity or reliability.Population: Research that involved Indonesian subjects.Participants: Research focused on adult subjects.Journal Accreditation: Articles published in accredited journals.<b>Dataset Contents</b>:The dataset includes metadata on the 17 articles that met the inclusion criteria after the screening process. Details include: author names, publication year, journal name, article title, abstract, methodology used, instruments for vocational interest, and evidence of validity and reliability.<b>Usage</b>:This dataset is intended for researchers, practitioners, and policymakers interested in vocational psychology, psychometrics, and the application of vocational interest assessment tools in Indonesia. It can serve as a foundation for further research, development of assessment tools, or policy recommendations in vocational guidance and career counseling.
DOI: 10.23641/asha.19606150.v1
title: Encoding and consolidation during word learning (Gordon et al., 2022)

description: <strong>Purpose: </strong>Children with typical development vary in how much experience they need to learn words. This could be due to differences in the amount of information encoded during periods of input, consolidated between periods of input, or both. Our primary purpose is to identify whether encoding, consolidation, or both, drive individual differences in the slow-mapping process. <strong>Method:</strong> Four- to 6-year-old children (<em>N</em> = 43) were trained on nine form-referent pairs across consecutive days. Children’s ability to name referents was assessed at the beginning and end of each session. Word learning was assessed 1 month after training to determine long-term retention. <strong>Results: </strong>Children with varying language knowledge and skills differed in their ability to encode words. Specifically, children varied in the number of words learned and the phonological precision of word forms at the end of the initial training session. Children demonstrated similarities in re-encoding in that they refined representations at a similar rate during subsequent sessions. Children did not differ in their ability to consolidate words between sessions, or in their ability to retain words over the 1-month delay. <strong>Conclusions: </strong>The amount of experience children need to learn words is primarily driven by the amount of information encoded during the initial experience. When provided with high-quality instruction, children demonstrate a similar ability to consolidate and retain words. Critically, word learning instruction in educational settings must include repeated explicit instruction with the same words to support learning in children with typical development and varying language skills. <br> <strong>Supplemental Material S1. </strong>Additional information about children’s performance on the GFTA-3 and Whole Word and Phonological Precision Scores. <br> <strong>Supplemental Material S2.</strong> Additional information about words trained each day for each child. <br> <strong>Supplemental Material S3. </strong>Performance of individual children including the number of words correct at the last training day, and number of words trained to criterion. <br> <strong>Supplemental Material S4.</strong> Specific characteristics of training days including average number of word trained each day and dosage of words within and across training days. <br> <strong>Supplemental Material S5.</strong> Final models for all analyses with PPVT scores and final models for all analyses with age in months. <br> <strong>Supplemental Material S6.</strong> Effect of retest on performance at one month. <br> Gordon, K. R., Lowry, S. L., Ohlmann, N. B., & Fitzpatrick, D. (2022). Word learning by preschool-age children: Differences in encoding, re-encoding, and consolidation across learners during slow mapping. <em>Journal of Speech, Language, and Hearing Research</em>. Advance online publication. https://doi.org/10.1044/2022_JSLHR-21-00530
DOI: 10.6084/m9.figshare.25041512.v1
title: Raw data of "Fabrication, characterization and numerical validation of a novel thin-wall hydrogel model for cardiovascular research based on a patient-specific stenotic carotid artery"

description: Fabrication, characterization and numerical validation of a novel thin-wall hydrogel model for cardiovascular research based on a patient-specific stenotic carotid artery
DOI: 10.6084/m9.figshare.3526976.v1
title: Appendix B. Parasitoid species/morphospecies, mode of attack, hosts parasitized in our study, and the habitat types in which they were found.

description: Parasitoid species/morphospecies, mode of attack, hosts parasitized in our study, and the habitat types in which they were found.
DOI: 10.6084/m9.figshare.19947896.v1
title: Supplementary Material for: Sustained Inflammation of Breast Tumors after Needle Biopsy

description: <b><i>Introduction:</i></b> Needle biopsy is essential for definitive diagnosis of breast malignancy. Significant histologic changes due to tissue damage have been reported in solid tumors. This study investigated the association between time from needle biopsy and inflammation in breast tumors. <b><i>Methods:</i></b> A total of 73 stage I–II invasive breast cancer cases diagnosed by image-guided needle biopsy who had surgery as their first definitive treatment were retrospectively analyzed. Time from biopsy to surgical excision ranged from 8 to 252 days. Histological sections of surgically resected tumors with a visible needle tract were reviewed by histologic evaluation. Data were analyzed by McNemar’s test for proportional differences, and the Benjamini-Hochberg procedure was used to assess the association between immune cell prevalence and clinical variables. <b><i>Results:</i></b> Characteristic histology changes, including foreign body giant-cell reaction, synovial-cell metaplasia, desmoplastic repair changes, granulation tissue, fat necrosis, and inflammation, were frequently detected adjacent to the needle tract. Spatial comparison indicated that a higher proportion of cases had neutrophils, eosinophils, and macrophages adjacent to the needle tract than tumors distant from it. The presence of inflammatory cells adjacent to the needle tract was not associated with time from biopsy or subtype. Still, plasma cells were associated with residual carrier material from biopsy markers. <b><i>Conclusion:</i></b> Macrophages and eosinophils are highly abundant and retained adjacent to the needle tract regardless of time from the biopsy.
DOI: 10.17632/8828ns2snr
title: Journal of Islam and Social Sciences; No. 16

description: The main objective of the Journal of Islam and Social Sciences is to provide an intellectual platform for national and international researchers to discuss their most recent findings related to the relationship of Islam and social sciences in Iran. By doing so, the journal hopes to improve the status of the field in Iran and in the world and to find solutions to theoretical and practical problems the profession is faced with. The wide range of issues related to the relationship between religion i.e. Islam and the social sciences requires that specialized scientific journals, and in the near future scientific researches, devote special attention to issues and problems raised in this regard. So the results of these researches will address the needs of the scientific community in the country. For this reason, the Department of Social Sciences of RIHU has been seeking publication of a journal titled "Islam and Social Sciences". Semi-annual journal of Islam and Social Sciences, in order to cooperate with other sections of Hawzah and University and to realize the above-mentioned goals and developing and deepening the literature in the field of relationships between Islam and social sciences and with the aim of providing scientific information, providing ground for dialogue and reflection of the opinions of scholars and creating a ground for the production of religious science and providing a suitable space for the further development and progress of the Islamic social sciences intends to examine the relations of religion, especially Islam and social sciences, in the form of publication of special issues. To serve this purpose, researchers are encouraged to submit their unpublished, original, full-length papers for potential publication in the journal. 

The journal is set to publish original articles on a wide range of issues including;

 Social philosophy: (in the Quran and other religious texts and the tradition, in the thought of Muslim scholars and comparison of different attitudes and approaches);
 Philosophy of social sciences: (in Islamic sources, convergence and divergence of different perspectives);
 Methodology of social sciences: (review of their function and their role in Islamic religious-Islamic social sciences);
 Social thoughts of Muslim thinkers: (social issues and strategic theories, theories, areas of sociology including sociology of religion, sociology of knowledge, historical sociology, cultural sociology);
 Religious theorizing (inferred from Islamic resources) on social issues;
 Reviewing and comparing social religious propositions of different religions with each other;
 Religious-Islamic sociology (subject, methods, theories, analysis and critique of approaches, goals and application, the relation of Islamic sociology with dominant paradigms in sociology, the role and application of Islamic sociology in Islamic and non-Islamic societies);
DOI: 10.4121/16860145.v3
title: Experimental data of Deposition patterns around buildings at the beach: effects of building spacing and orientation

description: Experimental data of scale experiments performed at the beach to determine the effect of building configurations on the deposition patterns around buildings. <br><br>Experiments were performed with scale models of 0.5x1x0.5m (WxLxH), placed at the beach for approximately 1 day. Aspects examined are:- Building orientation to the wind- Building spacing- Combinations of building orientation and spacing- Effect of pile heigt for buildings on piling- Effect of building group size<br>Deposition and erosion around buildings are measured using structure-from motion (SfM) photogrammetry. Data contains:- Raw photos used for SfM photogrammetry- Photogrammetry files- Digital elavation models (DEMs) and orthophotos of the deposition and erosion around scale models.- Time lapses of the the experiments- Wind speed and direction measurements- The length of the downwind deposition tails for the experiment on the effect of the building orientation to the wind<br>
DOI: 10.6084/m9.figshare.8397926.v11
title: AMAR L2+Products_all_cruises

description: ADEON Cruises: AR025, EN615, EN626, and AR040 AMAR L2+ data product. This data contains the Level 2 results computed from the ADEON passive acoustic monitoring data. Level 2 results are sound pressure levels (SPL), sound exposure levels (SEL) computed over different snapshot durations, and SPL/SEL statistics computed over different temporal analysis windows, as described in the ADEON Soundscape and Modelling Metadata Standard. The data is accompanied by folder containing 6 different readme files.
DOI: 10.17632/wjbzv6wwxm
title: Combustion of carbonized and non-carbonized rice husk briquettes in a fixed bed

description: This data are experimental results for combustion of carbonized and non-carbonized rice husk briquettes in a fixed bed. It contains results for temperature distribution in the bed for various briquettes samples, namely, 25 % carbonized/ 75 % non-carbonized, 50 % carbonized/ 50 % non-carbonized, 75 % carbonized/ 25 % non-carbonized and 100 % carbonized/ 0 % non-carbonized. It also has mass loss history results for the four mixtures.
DOI: 10.17632/6cvsg3zvg4
title: Supplemental material: histologic subtype of cutaneous immune-related adverse events predicts overall survival in patients receiving immune checkpoint inhibitors

description: Supplemental tables/figures for the publication in JAAD, "Histologic subtype of cutaneous immune-related adverse events predicts overall survival in patients receiving immune checkpoint inhibitors".  Accepted for publication 10/2021.
DOI: 10.15468/dl.vqj9ue
title: Occurrence Download

description: A dataset containing 24059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Bombus pratorum (Linnaeus, 1761)"
 ]
}

 The dataset includes 24059 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009425-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/rkyffrtpt7
title: Late Silurian-Early Devonian slab break-off beneath the Canadian Appalachians: insights from the Nashwaak Granite, west-central New Brunswick, Canada

description: Major and trace-element geochemistry, U-Pb zircon geochronology, H-O isotope, and Sr-Nd isotope of the New Brunswick granite
DOI: 10.6084/m9.figshare.19744804.v1
title: Supplementary Material for: Standardized Outcome Measures for Preterm and Hospitalized Neonates: An ICHOM Standard Set

description: <b><i>Introduction:</i></b> Approximately, one in ten infants is born preterm or requires hospitalization at birth. These complications at birth have long-term consequences that can extend into childhood and adulthood. Timely detection of developmental delay through surveillance could enable tailored support for these babies and their families. However, the possibilities for follow-up are limited, especially in middle- and low-income countries, and the tools to do so are either not available or too expensive. A standardized and core set of outcomes for neonates, with feasible tools for evaluation and follow-up, could result in improving quality, enhance shared decision-making, and enable global benchmarking. <b><i>Methods:</i></b> The International Consortium for Health Outcomes Measurement (ICHOM) convened an international working group, which was comprised of 14 health-care professionals (HCP) and 6 patient representatives in the field of neonatal care. An outcome set was developed using a three-round modified Delphi process, and it was endorsed through a patient representative-validation survey and an HCP survey. <b><i>Results:</i></b> A literature review revealed 1,076 articles and 26 registries which were screened for meaningful outcomes, patient-reported outcome measures, clinical measures, and case mix variables. This resulted in a neonatal set with 21 core outcomes covering three domains (physical, social, and mental functioning) and 14 tools to assess these outcomes at three timepoints. <b><i>Discussion:</i></b> This set can be implemented globally and it will allow comparison of outcomes across different settings and countries. The transparent consensus-driven development process which involved stakeholders and professionals from all over the world ensures global relevance.
DOI: 10.6084/m9.figshare.28748399.v1
title: All original image data.rar

description: All original image data for manuscript <b>RERE-AS1 in Breast Cancer: A Key Regulator of Tumor Progression and Immune Evasion</b>
DOI: 10.25403/upresearchdata.21711194.v1
title: Radio sources below the detection threshold and classified active galactic nuclei in the COSMOS field

description: The dataset used to select active galactic nucleus (AGN) candidates is labelled as <strong>G_all.csv.</strong> The two datasets selected by the two ensembles of neural controllers are labelled as <strong>G_0_ensemble.csv</strong> and <strong>G_all_ensemble.csv</strong> respectively. The dataset of detected AGN is labelled as <strong>agn.csv.</strong> In these four datasets, each source is described by the following columns: ra (right ascension) dec (declination) z (photmetric redshift) sfr (star-formation rate [log solar mass per year]) mass (stellar mass [log solar mass]) ks (Ks aperture magnitude) The final four columns are the IRAC filters, with the values following the underscore indicating the band (in units of micrometer): S_3.6 S_4.5 S_5.8 S_8.0 The values for these fields are extracted from the COSMOS2015 multiwavelength catalogue. A non-detection in any of the fields is indicated by the 'NA' keyword. The .fits files for the four radiomaps are also attached: VLA 3GHz VLA 3GHz smoothed VLA 1.4 GHz MeerKAT
DOI: 10.6084/m9.figshare.12870014.v1
title: Collated Transcripts Parental Mentalization

description: 5 transcripts of semi-structured interviews conducted with 5 expert clinicians and researchers in the field of mentalization. Interviews are on the topic of parental mentalization measures, and the current strengths and weaknesses of existing measures. Aim of interview was to find out what essential elements are needed in clinically valid and usable measures of parental mentalization.
DOI: 10.6084/m9.figshare.14034554.v2
title: Waterfowl mycoplasma putative prophages

description: The following data are putative prophage sequences found in two waterfowl mycoplasma, Mycoplasma anserisalpingitidis and Mycoplasma anatis. The prophage-like sequences were found in silico with the use of VIBRANT software (https://doi.org/10.1186/s40168-020-00867-0).
DOI: 10.6084/m9.figshare.1541240.v1
title: Relationship Between Eye Colour and Age

description: As a group Amena, Keethana, Taylor and I asked classmates what their age and eye colour were. Age was recorded in years and eye colour was obviously by colour. No special materials were used to measure the variables.