cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12791420
title: Comparative Field Trial of a Beer Blend Attractant and Coumaphos Acaricide for Small Hive Beetle Control

description: Data associated with publication.
DOI: 10.15468/dl.7bbdkm
title: Occurrence Download

description: A dataset containing 331 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhamnella rubrinervis (H.Lév.) Rehder"
 ]
}

 The dataset includes 331 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033115-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.593rwn
title: Occurrence Download

description: A dataset containing 1033 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhazya stricta Decne."
 ]
}

 The dataset includes 1033 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033116-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pf2etz
title: Occurrence Download

description: A dataset containing 6621 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhizophora apiculata Blume"
 ]
}

 The dataset includes 6621 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033117-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5hyf84
title: Occurrence Download

description: A dataset listing the 16 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Macroinvertebrados presentes en fuentes hídricas de los municipios Tadó, Istmina y Condoto (Chocó) - 2010"
 ]
}

 The dataset's 16 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033112-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jttbu7
title: Occurrence Download

description: A dataset containing 400 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodamnia argentea Benth."
 ]
}

 The dataset includes 400 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033118-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/08e71cd03bbcc5af48f01ab627a5f680
title: Carbon decomposition and nitrogen mineralization in Marsden agroecosystem diversification experiment

description: This dataset comprises measurements related to soil carbon decomposition from different soil depths in 36 soils during a laboratory incubation experiment. These soil samples were collected from a long-term agroecosystem diversification experiment initiated in 2002 at Iowa State University’s Marsden Farm. The dataset includes laboratory-measured soil organic carbon (SOC) content, CO2 fluxes from SOC decomposition, and nitrogen mineralization rates. Additionally, it also includes model simulation results about soil carbon decomposition represented by three different process-based models: CN-SIM, Agro-IBIS, and MEND.
DOI: 10.15468/dl.ck2wjc
title: Occurrence Download

description: A dataset containing 9478 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodamnia rubescens (Benth.) Miq."
 ]
}

 The dataset includes 9478 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033119-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26352094
title: Modelling brain connectomes networks: Solv is a worthy competitor to hyperbolic geometry!

description: Finding suitable embeddings for connectomes (spatially embedded complex networks that map neural connections Recent studies have found two-dimensional hyperbolic embeddings superior to Euclidean embeddings in modeling connectomes across species, especially human connectomes. However, those studies had limitations: geometries other than Euclidean, hyperbolic, or spherical were not considered. Following William Thurston's suggestion that the networks of neurons in the brain could be successfully represented in Solv geometry, we study the goodness-of-fit of the embeddings for 21 connectome networks (8 species). To this end, we suggest an embedding algorithm based on Simulating Annealing that allows us to embed connectomes to Euclidean, Spherical, Hyperbolic, Solv, Nil, and product geometries. Our algorithm tends to find better embeddings than the state-of-the-art, even in the hyperbolic case. Our findings suggest that while three-dimensional hyperbolic embeddings yield the best results in many cases, Solv embeddings perform reasonably well.
DOI: 10.15468/dl.6hmamd
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron griersonianum Balf.fil. & Forrest"
 ]
}

 The dataset includes 84 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033121-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/gjk47cjm26.1
title: A Comparative Study of Protein Structure Prediction Tools for Challenging Targets: Snake Venom Toxins

description: Protein structure determination is a critical aspect of biological research, enabling us to understand protein function and potential applications. Recent advances in deep learning and artificial intelligence have led to the development of several protein structure prediction tools, such as AlphaFold2 and ColabFold. However, their performance has primarily been evaluated on well-characterised proteins, and comparisons using proteins with poor reference templates are lacking. In this study, we evaluated three modelling tools on their prediction of over 1000 snake venom toxin structures with no reference templates. Our findings show that AlphaFold2 (AF2) performed the best across all assessed parameters. We also observed that ColabFold (CF) only scored slightly worse than AF2, while being computationally less intensive. All tools struggled with regions of intrinsic disorder, such as loops and propeptide regions, and performed well in predicting the structure of functional domains. Overall, our study highlights the importance of exercising caution when working with proteins that have poor reference templates, are large, and contain flexible regions. Nonetheless, leveraging computational structure prediction tools can provide valuable insights into the modelling of protein interactions with different targets and reveal potential binding sites, active sites, and conformational changes, as well as into the design of potential molecular binders for reagent, diagnostic, or therapeutic purposes.

Here we have deposited all structures used in this study.
DOI: 10.5281/zenodo.12797116
title: Object A-2

description: Object A-2. Average nucleotide identity scores between putative P. syringae strains and P. syringae type strain ICMP 3023T. Kiersten Fullem, Dissertation, University of Florida 2024.
DOI: 10.5281/zenodo.12797117
title: Object A-2

description: Object A-2. Average nucleotide identity scores between putative P. syringae strains and P. syringae type strain ICMP 3023T. Kiersten Fullem, Dissertation, University of Florida 2024.
DOI: 10.17632/rvgfc4n9tg.1
title: Transcript data for articles to be published in the Heliyon journal

description: This data set comprises transcripts from field interviews conducted with various stakeholders in Sumedang Regency, Indonesia. The interviews aimed to gather insights into the implementation of digital transformation of public services at the Sumedang Regency Public Service Mall (MPP). The data highlights the challenges, strategies, and outcomes associated with this transformation, providing valuable information for understanding the impact and effectiveness of digital initiatives in public service delivery.
DOI: 10.17632/kwh6x3n43m.1
title: Simulated Dataset for "Multicategory Purchase Behavior: Basket Choice, Shopping Frequency, and Promotional Analysis”

description: Simulated Dataset for "Multicategory Purchase Behavior: Basket Choice, Shopping Frequency, and Promotional Analysis”
DOI: 10.15468/dl.arf5q9
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron henanense W.P.Fang"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033123-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/72d9dyrf7r.1
title: Blending and separating dynamics of RNA-binding proteins develop architectural splicing networks spreading throughout the nucleus. Masuda et al.

description: "Figure_related_data.zip" contains .jpg or .tif files for figures. "raw_images.zip" contains images with and without super-resolution/deconvolution processing.
DOI: 10.15468/dl.eakk9q
title: Occurrence Download

description: A dataset containing 38960 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-93.3454 16.77346,-93.12553 16.77346,-93.11989 16.95105,-93.34328 16.95176,-93.3454 16.77346))"
 ]
}

 The dataset includes 38960 records from 228 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033122-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/jc4cd55nwm.1
title: Data for: Experimental field study of basic mechanisms underlying dissolved 137Cs seasonal variations in ponds in the vicinity of the Fukushima Daiichi nuclear power plant

description: Raw data for all figures in the manuscript by Flynn and Catalano to be published by Geochimica et Cosmochimica Acta as "Experimental field study of basic mechanisms underlying dissolved 137Cs seasonal variations in ponds in the vicinity of the Fukushima Daiichi nuclear power plant"
DOI: 10.17632/jc4cd55nwm.2
title: Data for: Experimental field study of basic mechanisms underlying dissolved 137Cs seasonal variations in ponds heavily contaminated after the Fukushima Daiichi nuclear power plant accident

description: Raw data for all figures in the manuscript by Konoplev et al to be published by Applied Geochemistry as "Experimental field study of basic mechanisms underlying dissolved 137Cs seasonal variations in ponds heavily contaminated after the Fukushima Daiichi nuclear power plant accident"
DOI: 10.5281/zenodo.12797118
title: WHOI plankton dataset
DOI: 10.5281/zenodo.12797119
title: WHOI plankton dataset
DOI: 10.15468/dl.42mbss
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron kiyosumense (Makino) Makino"
 ]
}

 The dataset includes 157 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033124-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.3761562.v3003
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.25746663
title: <b>Qualidade de vida de pessoas idosas na Amazônia Ocidental / </b><b>Quality of life of older adults in the Western Amazon</b>

description: <br>Estudo sobre qualidade de vida de pessoas idosas participantes de grupos comunitários.Study on quality of life of older adults that participate in community groups.<br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br>
DOI: 10.6084/m9.figshare.25746663.v2
title: <b>Qualidade de vida de pessoas idosas na Amazônia Ocidental / </b><b>Quality of life of older adults in the Western Amazon</b>

description: <br>Estudo sobre qualidade de vida de pessoas idosas participantes de grupos comunitários.Study on quality of life of older adults that participate in community groups.<br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br>
DOI: 10.6084/m9.figshare.25746663.v1
title: BANCO_DE_DADOS.xlsx_<b>Qualidade de vida de pessoas idosas na Amazônia Ocidental</b>IIdI

description: <br>Estudo sobre qualidade de vida de pessoas idosas participantes de grupos comunitários.<br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br>
DOI: 10.15468/dl.p4hj52
title: Occurrence Download

description: A dataset containing 523 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron mucronatum (Blume) G.Don"
 ]
}

 The dataset includes 523 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033125-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12797150
title: Object A-3

description: Object A-3. Average nucleotide identity results for comparisons between Pssc reference strains and cucurbit-associated strains to type strains of P. syringae and P. cerasi. Kiersten Fullem, Dissertation, University of Florida 2024.
DOI: 10.5281/zenodo.12797151
title: Object A-3

description: Object A-3. Average nucleotide identity results for comparisons between Pssc reference strains and cucurbit-associated strains to type strains of P. syringae and P. cerasi. Kiersten Fullem, Dissertation, University of Florida 2024.
DOI: 10.15468/dl.rtan9b
title: Occurrence Download

description: A dataset containing 4458 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron simsii Planch."
 ]
}

 The dataset includes 4458 records from 188 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033127-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tf855w
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Telescopus pulcher (Scortecci, 1935)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276485-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k6jcqm
title: Occurrence Download

description: A dataset containing 16158 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bee Specimens from Michael Veit Collection"
 ]
}

 The dataset includes 16158 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136391-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pemabn
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtodactylus cucphuongensis Ngo & Onn, 2011"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281428-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r37jyd
title: Occurrence Download

description: A dataset containing 230403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ardea melanocephala Children & Vigors, 1826"
 ]
}

 The dataset includes 230403 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136394-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qe9awf
title: Occurrence Download

description: A dataset containing 660825 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Swertia wardii C.Marquand, Euphorbia kozlovii Prokh., Aconitum liljestrandii Hand.-Mazz., Aconitum kongboense Lauener, Aconitum ouvrardianum Hand.-Mazz., Aconitum yangii W.T.Wang & L.Q.Li, Berberis sabulicola T.S.Ying, Corydalis eugeniae Fedde, Gentiana waltonii Burkill, Croton tiglium L., Piper cubeba L.fil., Setaria italica (L.) P.Beauv., Setaria italica (L.) P.Beauv., Lagotis angustibracteata P.C.Tsoong & H.P.Yang, Delphinium trichophorum Franch., Chamaenerion conspersum (Hausskn.) Kitam., Corydalis tsayulensis C.Y.Wu & H.Chuang, Meconopsis pseudohorridula C.Y.Wu & H.Chuang, Meconopsis racemosa Maxim., Anthriscus sylvestris (L.) Hoffm.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 660825 records from 1828 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136392-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2xg5ey
title: Occurrence Download

description: A dataset containing 27328 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heteropterus morpheus (Pallas, 1771)"
 ]
}

 The dataset includes 27328 records from 699 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042162-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w3jnqh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxalis uliginosa Schltr.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.4784 -23.4046,15.4933 -24.0715,20.509 -24.0715,20.509 -24.0455,20.0952 -23.5072,19.9968 -23.017,19.7843 -22.5405,19.1988 -21.8785,18.5972 -21.5447,17.8859 -21.3993,17.1626 -21.4805,16.5332 -21.7596,16.1257 -22.0882,15.8234 -22.4662,15.606 -22.8993,15.4784 -23.4046))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042163-250525065834625/datasets/export for details.
DOI: 10.15468/dl.mvnwxh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chlorella M.Beijerinck, 1890",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.529 -24.0715,20.509 -24.0455,20.509 -24.0715,20.529 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042164-250525065834625/datasets/export for details.
DOI: 10.15468/dl.62wa7d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxalis uliginosa Schltr.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -28.5786,20.509 -28.5786,20.509 -32.9007,25.5395 -32.9007,25.5395 -28.5786))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042165-250525065834625/datasets/export for details.
DOI: 10.15468/dl.ugrhed
title: Occurrence Download

description: A dataset containing 2685 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colias myrmidone (Esper, 1781)"
 ]
}

 The dataset includes 2685 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042166-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnf4bh
title: Occurrence Download

description: A dataset containing 10699 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boloria napaea (Hoffmansegg, 1804)"
 ]
}

 The dataset includes 10699 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042167-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ga93sd
title: Occurrence Download

description: A dataset containing 321866 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'VE'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 321866 records were derived from 1273 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042147-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/7hd-yef-jpv
title: Actaea spicata L.

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.