cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25505/fiz.icsd.cc286pmt
title: CSD 2091806: Experimental Crystal Structure Determination

description: Related Article: Kasey P. Devlin, Shunda Chen, Davide Donadio, Susan M. Kauzlarich|2021|Inorg.Chem.|60|13596|doi:10.1021/acs.inorgchem.1c01906
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc284mln
title: CSD 2089821: Experimental Crystal Structure Determination

description: Related Article: Dominik Spahr, Jannes König, Lkhamsuren Bayarjargal, Pavel N. Gavryushkin, Victor Milman, Hanns-Peter Liermann, Björn Winkler|2021|Inorg.Chem.|60|14504|doi:10.1021/acs.inorgchem.1c01900
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5519/qd.tobfgpph
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (160 records)
DOI: 10.5066/p9kct9hs
title: Dataset: Addressing detection uncertainty in Bombus affinis (Hymenoptera: Apidae) surveys can improve inferences made from monitoring
DOI: 10.5066/p9dkmy4l
title: Data release for: Does the quality and quantity of honey bee-collected pollen vary across an agricultural land-use gradient?

description: This dataset includes pollen sample weight in grams and percent crude protein collected by honey bees (Apis mellifera) across 38 apiaries in Minnesota, North Dakota, and South Dakota approximately weekly from June through September in 2015 and 2016. Additionally it includes the hectares of different land covers (corn, Zea mays, &amp;amp;amp;amp;amp;amp;amp; soybeans, Glycine max, grasslands, bee forage crops, and wetlands) located within a 4 km radius of each apiary.
DOI: 10.5281/zenodo.7464335
title: A Policy and Infrastructure Evaluation Model of Commodity Flows through Inland Waterway Ports (Dataset)

description: The purpose of this project is to guide strategic investment into port capacity through the development of a policy and infrastructure evaluation model of inland waterway commodity flows. A multi-stage stochastic optimization model will be developed to evaluate tradeoffs in strategic, long-term port infrastructure investment with mid-term capacity expansion decisions and provision of complementary highway infrastructure made by public and private stakeholders, and shorter-term operational practices made by shippers and carriers. This work builds on prior MarTREC projects which developed a Multi-Commodity Assignment Problem to estimate annual commodity flows through inland waterway ports from truck Global Positioning System (GPS), marine Automatic Identification System (AIS), and the Lock Performance Management System (LPMS). The proposed project will explore critical extensions of the assignment model: 1) disaggregation of the temporal scope to reflect monthly seasonality among commodities, 2) incorporation of uncertainty related to observed vehicle and vessel movement data, and 3) inclusion of transportation costs. With these extensions the team expects to increase the accuracy and resolution of the commodity-based port throughput estimates and to allow the model to be used to not only describe the current system but to prescribe policy and project investment strategies for public and private sector transportation decision makers. Calibration and validation of the multi-stage optimization model will be done through two case studies. The regional-based study will use historical truck GPS, marine AIS, and LPMS datasets. The national-based study will use data from the Billion Ton Study led by the US Department of Energy. This will ensure a feasible and realistic base-case on which to compare future policy scenarios. This project aligns with MarTREC’s research focus area in Maritime and Multimodal Logistics Management by modeling commodity flows through ports that serve as critical connections for the multimodal freight supply chain.
DOI: 10.5281/zenodo.7464336
title: A Policy and Infrastructure Evaluation Model of Commodity Flows through Inland Waterway Ports (Dataset)

description: The purpose of this project is to guide strategic investment into port capacity through the development of a policy and infrastructure evaluation model of inland waterway commodity flows. A multi-stage stochastic optimization model will be developed to evaluate tradeoffs in strategic, long-term port infrastructure investment with mid-term capacity expansion decisions and provision of complementary highway infrastructure made by public and private stakeholders, and shorter-term operational practices made by shippers and carriers. This work builds on prior MarTREC projects which developed a Multi-Commodity Assignment Problem to estimate annual commodity flows through inland waterway ports from truck Global Positioning System (GPS), marine Automatic Identification System (AIS), and the Lock Performance Management System (LPMS). The proposed project will explore critical extensions of the assignment model: 1) disaggregation of the temporal scope to reflect monthly seasonality among commodities, 2) incorporation of uncertainty related to observed vehicle and vessel movement data, and 3) inclusion of transportation costs. With these extensions the team expects to increase the accuracy and resolution of the commodity-based port throughput estimates and to allow the model to be used to not only describe the current system but to prescribe policy and project investment strategies for public and private sector transportation decision makers. Calibration and validation of the multi-stage optimization model will be done through two case studies. The regional-based study will use historical truck GPS, marine AIS, and LPMS datasets. The national-based study will use data from the Billion Ton Study led by the US Department of Energy. This will ensure a feasible and realistic base-case on which to compare future policy scenarios. This project aligns with MarTREC’s research focus area in Maritime and Multimodal Logistics Management by modeling commodity flows through ports that serve as critical connections for the multimodal freight supply chain.
DOI: 10.26036/cnp0003407
title: polyphosphate genes in Karenia mikimotoi

description: polyphosphate genes in Karenia mikimotoi
DOI: 10.5281/zenodo.7464406
title: Experimental data for TICAL - trusted integrity

description: Benchmark scripts and result outputs (CSV files) including plotted graphs of SCONE's file system auditing mechanism to ensure trusted integrity needed for trusted compilation and patch management.
DOI: 10.5281/zenodo.7464405
title: Experimental data for TICAL - trusted integrity

description: Benchmark scripts and result outputs (CSV files) including plotted graphs of SCONE's file system auditing mechanism to ensure trusted integrity needed for trusted compilation and patch management.
DOI: 10.15131/shef.data.21739733.v1
title: Registration inputs

description: Registration inputs for the paper titled: Deformable image registration based on single or multi-atlas methods for automatic muscle segmentation and the generation of augmented imaging datasets <br> fixed (red channel), moving (green channel), and fixed segmentations (blue channel) are combined in one easy to use 3D dicom file. There are 20 combinations presented, with each of 5 subjects used as both the fixed and the moving subject. <br> The results.xcel file highlights the numerical results for the automatic segmentation we found using an in house registration toolkit. If one would like to test others, simply download and register the fixed and moving images, and apply the deformation to the blue channel segmentations. <br> <br> <br> See read me for details.
DOI: 10.5281/zenodo.7464270
title: Molecular mechanism for the synchronized electrostatic coacervation and co-aggregation of alpha-synuclein and tau

description: <strong><em>The following metadata refers exclusively to electron paramagnetic resonance (EPR) measurements, which represent the contribution of the PARACAT students to this work</em></strong> <strong>Data type</strong>: EPR spectroscopic measurements and simulations Files are in <strong>.DTA, .DSC, .m, .mat, and .xlxs, </strong>formats Information on <strong>origin of the data</strong>: EPR spectroscopic measurements in <strong>.DTA </strong>and<strong> .DSC</strong> formats EPR spectroscopic simulation and analyses in .<strong>m </strong>and<strong> .mat</strong> format “Ready-to-plot”, processed EPR spectra are in <strong>.xlxs</strong> format. The data are <strong>generated</strong> by: CW-EPR measurements were performed with a Bruker ELEXSYS E580 X-band spectrometer equipped with a Bruker ER4118 SPT-N1 resonator operating at a microwave (MW) frequency of ∼9.7 GHz. The temperature was set to 25 °C and controlled by a liquid nitrogen cryostat. <strong>If the dataset includes multiple files that relate to each other:</strong> Files in <strong>PARACAT_WP3_20221219_EPR </strong>folder includes EPR spectroscopic measurements and computer simulations/analyses, original data are in <strong> .DTA/.DSC</strong> formats; files in .<strong>m</strong> format were used to process the data. NB. See the “READ ME” text file for more detailed information on files organization. <strong>Information on</strong>: Abbreviations: <strong>avg</strong> = averaged <strong>aS_24</strong> = alpha-synuclein protein with TEMPOL spin label at position 24 of the polypeptidic chain <strong>aS_122</strong> = alpha-synuclein protein with TEMPOL spin label at position 122 of the polypeptidic chain <strong>pLK</strong> = poly-lysine <strong>Tau441</strong> = Tau protein with complete amino-acid sequence <strong>Tau_DNt</strong> = truncated Tau protein lacking N-terminal (see paper methods for further details) Units of measurement: Temperature: <strong>°</strong><strong>C</strong> (Celsius) Microwave Frequency: <strong>GHz</strong> (Giga-Hertz), <strong>MHz</strong> (Mega-Hertz), <strong>kHz</strong> (kilo-Hertz) Microwave Power: <strong>mW</strong> (milli-Watt) Magnetic Field: <strong>mT</strong> (milli-Tesla) Time: <strong>s</strong> (seconds) Concentration: <strong>μM</strong> (micro-Molar), <strong>% w/v</strong> (percentage weight-volume)
description:  EPR data: The .DTA and .DSC files can be opened on proprietary EPR softwares from Bruker or MatLab (version R2021b, used by the authors) with EasySpin toolbox (version 6.0.0-dev.34, used by the authors). The simulation scripts of EPR measurements can be opened and run on MatLab (version R2021b, used by the authors) with EasySpin toolbox (version 6.0.0-dev.34, used by the authors). MatLab can be purchased/downloaded from: https://www.mathworks.com/products/matlab.html; EasySpin toolbox can be downloaded from: https://easyspin.org/  "Ready-to-plot", processed EPR spectra can be opened with Microsoft Excel (or an analogous open access software).
DOI: 10.5281/zenodo.7464269
title: Molecular mechanism for the synchronized electrostatic coacervation and co-aggregation of alpha-synuclein and tau

description: <strong><em>The following metadata refers exclusively to electron paramagnetic resonance (EPR) measurements, which represent the contribution of the PARACAT students to this work</em></strong> <strong>Data type</strong>: EPR spectroscopic measurements and simulations Files are in <strong>.DTA, .DSC, .m, .mat, and .xlxs, </strong>formats Information on <strong>origin of the data</strong>: EPR spectroscopic measurements in <strong>.DTA </strong>and<strong> .DSC</strong> formats EPR spectroscopic simulation and analyses in .<strong>m </strong>and<strong> .mat</strong> format “Ready-to-plot”, processed EPR spectra are in <strong>.xlxs</strong> format. The data are <strong>generated</strong> by: CW-EPR measurements were performed with a Bruker ELEXSYS E580 X-band spectrometer equipped with a Bruker ER4118 SPT-N1 resonator operating at a microwave (MW) frequency of ∼9.7 GHz. The temperature was set to 25 °C and controlled by a liquid nitrogen cryostat. <strong>If the dataset includes multiple files that relate to each other:</strong> Files in <strong>PARACAT_WP3_20221219_EPR </strong>folder includes EPR spectroscopic measurements and computer simulations/analyses, original data are in <strong> .DTA/.DSC</strong> formats; files in .<strong>m</strong> format were used to process the data. NB. See the “READ ME” text file for more detailed information on files organization. <strong>Information on</strong>: Abbreviations: <strong>avg</strong> = averaged <strong>aS_24</strong> = alpha-synuclein protein with TEMPOL spin label at position 24 of the polypeptidic chain <strong>aS_122</strong> = alpha-synuclein protein with TEMPOL spin label at position 122 of the polypeptidic chain <strong>pLK</strong> = poly-lysine <strong>Tau441</strong> = Tau protein with complete amino-acid sequence <strong>Tau_DNt</strong> = truncated Tau protein lacking N-terminal (see paper methods for further details) Units of measurement: Temperature: <strong>°</strong><strong>C</strong> (Celsius) Microwave Frequency: <strong>GHz</strong> (Giga-Hertz), <strong>MHz</strong> (Mega-Hertz), <strong>kHz</strong> (kilo-Hertz) Microwave Power: <strong>mW</strong> (milli-Watt) Magnetic Field: <strong>mT</strong> (milli-Tesla) Time: <strong>s</strong> (seconds) Concentration: <strong>μM</strong> (micro-Molar), <strong>% w/v</strong> (percentage weight-volume)
description:  EPR data: The .DTA and .DSC files can be opened on proprietary EPR softwares from Bruker or MatLab (version R2021b, used by the authors) with EasySpin toolbox (version 6.0.0-dev.34, used by the authors). The simulation scripts of EPR measurements can be opened and run on MatLab (version R2021b, used by the authors) with EasySpin toolbox (version 6.0.0-dev.34, used by the authors). MatLab can be purchased/downloaded from: https://www.mathworks.com/products/matlab.html; EasySpin toolbox can be downloaded from: https://easyspin.org/  "Ready-to-plot", processed EPR spectra can be opened with Microsoft Excel (or an analogous open access software).
DOI: 10.7294/21750689
title: Software and Data for "Long term temporal trends in synoptic-scale weather conditions favoring significant tornado occurrence over the central United States"

description: This is software and data to support the manuscript "Long term temporal trends in synoptic-scale weather conditions favoring significant tornado occurrence over the central United States," which is under review with PLOS One. The software includes all code that is necessary to follow and evaluate the work. Additional public datasets include tornado data from the Storm Prediction Center (http://www.spc.noaa.gov/wcm/#gis), MERRA-2 reanalysis data (https://doi.org/10.5067/VJAFPLI1CSIV), North American Regional Reanalysis data (https://psl.noaa.gov/data/gridded/data.narr.html), Global Wind Oscillation data (https://psl.noaa.gov/map/clim/gwo.data.txt), and the Nino 3.4 index.(https://www.cpc.ncep.noaa.gov/products/analysis_monitoring/ensostuff/detrend.nino34.ascii.txt).
DOI: 10.7294/21750689.v1
title: Software and Data for "Long term temporal trends in synoptic-scale weather conditions favoring significant tornado occurrence over the central United States"

description: This is software and data to support the manuscript "Long term temporal trends in synoptic-scale weather conditions favoring significant tornado occurrence over the central United States," which is under review with PLOS One. The software includes all code that is necessary to follow and evaluate the work. Additional public datasets include tornado data from the Storm Prediction Center (http://www.spc.noaa.gov/wcm/#gis), MERRA-2 reanalysis data (https://doi.org/10.5067/VJAFPLI1CSIV), North American Regional Reanalysis data (https://psl.noaa.gov/data/gridded/data.narr.html), Global Wind Oscillation data (https://psl.noaa.gov/map/clim/gwo.data.txt), and the Nino 3.4 index.(https://www.cpc.ncep.noaa.gov/products/analysis_monitoring/ensostuff/detrend.nino34.ascii.txt).
DOI: 10.15139/s3/dnnriz
title: Replication Data for: Preaching to the Choir or Proselytizing to the Opposition: Examining the Use of Campaign Websites in State Legislative Elections

description: The Internet has spawned a renewed hope for facilitating increased access to candidate information for voters. However, the nationalization and polarization of constituents has left many candidates averse to the risks of personalized campaigns, especially in subnational elections. Under what conditions are state candidates willing to establish a personalized web presence as opposed to relying on partisanship? This study introduces a novel dataset of campaign website presence for the 2018 and 2020 state legislative elections. During this time, roughly one-third of state legislative candidates opted to forgo a personalized campaign website. District-level constituent ideology was significantly correlated with website use, even when controlling for district education, income, age, and race, and the candidate’s competitive position. District ideological homogeneity encouraged website use across both parties, while adversarial district ideology corresponded to low website use among Republicans. The results indicate that state legislative candidates, especially Republican candidates, are far more likely to preach to their partisan choir rather than incur the risks of proselytizing among their partisan opposition. The results reiterate the divergent responses of the political parties regarding partisan polarization and shed light on the impact of nationalization within state legislative campaigns.
DOI: 10.5281/zenodo.7428895
title: Data records for PdpP phases observed from Fiji-Tonga earthquakes

description: This data file presents the observations for 21 Fiji-Tonga earthquakes (events 1-21) with high-quality PdpP signals and 5 Fiji-Tonga earthquakes (events 33-37) without PdpP signals. It includes the vertical-component recordings in sub-arrays from China National seismic Network (CNSN) and the corresponding 4-th root vespagrams generated in each sub-array.
DOI: 10.5281/zenodo.7442130
title: Data records for PdpP phases observed from Fiji-Tonga earthquakes

description: This data file presents the observations for 21 Fiji-Tonga earthquakes (events 1-21) with high-quality PdpP signals and 5 Fiji-Tonga earthquakes (events 33-37) without PdpP signals. It includes the vertical-component recordings in sub-arrays from China National seismic Network (CNSN) and the corresponding 4-th root vespagrams generated in each sub-array.
DOI: 10.17632/jjfzr6xhb2.1
title: Mouse microglia and peripheral monocytes in contextual fear conditioning_Supplementary Table 

description: Supplementary Table 1 provides the result of differential gene transcription of microglia after fear memory consolidation and extinction. In detail, the mean value of microarray data in each condition was compared separately. After fear memory consolidation, 2,546 probes were increased, and 2,286 probes were decreased in microglia (FS0/Con3). After fear memory extinction, 2,400 probes increased, and 3,074 probes decreased in microglia (FS30/FS0), which is done by increased fold change > 1.2 and decreased fold change < 0.833 with signal intensity > 50.
DOI: 10.17632/5235zpgpzv.1
title: Realizacja prac B+R celem wprowadzenia na rynek inteligentnej szafy  zarządzającej przechowywanymi urządzeniami mobilnymi

description: Wyniki  projektu badawczego pn. "Realizacja prac B+R celem wprowadzenia na rynek inteligentnej szafy 
zarządzającej przechowywanymi urządzeniami mobilnymi."
DOI: 10.17632/8wz3wvm9y5.1
title: Simultaneous EEG-SEEG recordings of deep mesial temporal sources

description: Nine simultaneous EEG-SEEG datasets corresponding to mesial temporal networks  involving seven patients (three females, mean age of 38 years) with temporal lobe epilepsy (TLE). These patients had an epileptogenic zone confined to the temporal lobe and one interictal intracerebral spike (IIS) source confined to the mesial temporal lobe, as defined by SEEG recordings.  Within each of these networks, the earliest IIS with the highest amplitude were manually marked with a trigger (t0) at the peak of the initial component. A total of 1,949 IIS was selected. The mean IIS amplitude was 729 ± 279 µV.
EEG-SEEG segments were extracted using the same 1 sec epoch centered on t0 as SEEG segments. 
Segments with scalp EEG amplitude > 150 µV that represented < 10% of all segments were rejected and considered as artifacts. The remaining segments were band-pass filtered (1.5-30 Hz).

Simultaneous SEEG and EEG recordings were performed using a 128-channel system with 512 Hz sample rate, an analog 0.15Hz high-pass filter and scalp FPz electrode as reference. 

All patients gave their informed consent prior to participation. The study was granted approval by the local ethics committee (CHRU, Nancy).

This dataset contains i) one table with the correspondence between SEEG electrode names and brain anatomical structures and ii) 9 folders (corresponding to the nine IIS mesial networks) with EEG and SEEG segments (1 sec centered on t0 i.e., when the first epileptic spikes occurred) of the corresponding networks (matlab format).
 
Reference : Koessler L, Cecchin T, Colnat-Coulbois S, Vignal JP, Jonas J, Vespignani H, Ramantani G, Maillard LG. Catching the invisible: mesial temporal source contribution to simultaneous EEG and SEEG recordings. Brain Topogr. 2015 Jan;28(1):5-20. doi: 10.1007/s10548-014-0417-z.
DOI: 10.17632/8wz3wvm9y5.2
title: Simultaneous EEG-SEEG recordings of deep mesial temporal sources

description: Nine simultaneous EEG-SEEG datasets corresponding to mesial temporal networks  involving seven patients (three females, mean age of 38 years) with temporal lobe epilepsy (TLE). These patients had an epileptogenic zone confined to the temporal lobe and one interictal intracerebral spike (IIS) source confined to the mesial temporal lobe, as defined by SEEG recordings.  Within each of these networks, the earliest IIS with the highest amplitude were manually marked with a trigger (t0) at the peak of the initial component. A total of 1,949 IIS was selected. The mean IIS amplitude was 729 ± 279 µV.
EEG-SEEG segments were extracted using the same 1 sec epoch centered on t0 as SEEG segments. 
The remaining segments were band-pass filtered (1.5-30 Hz).
In this database, artifact rejection (segments with scalp EEG amplitude >150µV ; that represent < 10% of all segments) was not performed.

Simultaneous SEEG and EEG recordings were performed using a 128-channel system with 512 Hz sample rate, an analog 0.15Hz high-pass filter and scalp FPz electrode as reference. 

All patients gave their informed consent prior to participation. The study was granted approval by the local ethics committee (CHRU, Nancy).

This dataset contains i) one table with the correspondence between SEEG electrode names and brain anatomical structures and ii) 9 folders (corresponding to the nine IIS mesial networks) with EEG and SEEG segments (1 sec centered on t0 i.e., when the first epileptic spikes occurred) of the corresponding networks (matlab format).
 
References, please cite : 

Koessler L, Cecchin T, Colnat-Coulbois S, Vignal JP, Jonas J, Vespignani H, Ramantani G, Maillard LG. Catching the invisible: mesial temporal source contribution to simultaneous EEG and SEEG recordings. Brain Topogr. 2015 Jan;28(1):5-20. doi: 10.1007/s10548-014-0417-z. 

Ternisien E, Cecchin T, Colnat-Coulbois S, Maillard LG, Koessler L. Extracting the Invisible : Mesial Temporal Source Detection in Simultaneous EEG and SEEG recordings. Brain Topography (in review), https://doi.org/10.21203/rs.3.rs-2201044/v1