cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5ff3m952
title: MassIVE MSV000092596 - Metabolomics analysis on engineered cellular and cell-free samples for muconic acid production
title: This data set contains mass spectrometry reads for 48 cell-free samples and 72 cellular samples from two different organisms (Saccharomyces cerevisiae and E. coli), with or without heterologous muconic acid pathway, with or without metabolic rewiring to enhance the muconic acid production, as well as associated internal and external controls. This metabolomics data set was collected for an attempt to decipher the differences and associations between in vitro and in vivo systems for metabolic engineering. The work (proposal:https://doi.org/10.46936/10.25585/60008411) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.5281/zenodo.8215939
title: Improving AlphaFold2-based Protein Tertiary Structure Prediction with MULTICOM in CASP15

description: Improving AlphaFold2-based Protein Tertiary Structure Prediction with MULTICOM in CASP15
description: {"references": ["Liu, Jian, et al. \"Improving AlphaFold2-based Protein Tertiary Structure Prediction with MULTICOM in CASP15.\" bioRxiv (2023): 2023-05."]}
DOI: 10.5281/zenodo.8215938
title: Improving AlphaFold2-based Protein Tertiary Structure Prediction with MULTICOM in CASP15

description: Improving AlphaFold2-based Protein Tertiary Structure Prediction with MULTICOM in CASP15
description: {"references": ["Liu, Jian, et al. \"Improving AlphaFold2-based Protein Tertiary Structure Prediction with MULTICOM in CASP15.\" bioRxiv (2023): 2023-05."]}
DOI: 10.1184/r1/23677098
title: EEG-BCI Dataset for Motor Imagery and Overt Spatial Attention EEG-BCI Control

description: This dataset consists of EEG recordings and Brain-Computer Interface (BCI) data from 25 different human subjects performing BCI experiments. More information can be found in the corresponding manuscript: <br> Dylan Forenzo, Yixuan Liu, Jeehyun Kim, Yidan Ding, Taehyung Yoon, Bin He: “Integrating Simultaneous Motor Imagery and Spatial Attention for EEG-BCI Control”, IEEE Transactions on Biomedical Engineering (10.1109/TBME.2023.3298957). <br> Please cite this paper if you use any data included in this dataset. <br> The dataset was collected under the support of NIH grants AT009263, EB021027, EB029354, NS096761, NS124564 to Dr. Bin He at Carnegie Mellon University. <br> Each file is a MATLAB object (.mat file) which contains data from a single run of BCI control. The MATLAB files are grouped into folders based on the Subject, one for each of the 25 subjects studied. Each subject completed 5 sessions of BCI experiments and each session consisted of either 18 (sessions 1 and 2) or 15 (sessions 3-5) runs, for a total of 81 runs per subject or 2025 total BCI runs. <br> Each of the MATLAB files contains a single structure with the following fields: <br> <strong>data:</strong> An array containing the EEG recordings with the size (channels x time points) <br> <strong>times:</strong> A vector containing the timestamps in milisceonds with the size (1 x time points) <br> <strong>fs:</strong> sampling frequency (1000 Hz) <br> <strong>labels:</strong> A cell array containing the label for each channel <br> <strong>targets:</strong> A list of target codes. For LR: 1 is right, 2 is left. For UD: 1 is up, 2 is down. For 2D: 1 is right, 2 is left, 3 is up, and 4 is down <br> <strong>event: </strong>A structure of events from BCI2000. Each index corresponds to the start of a trial and includes the time (latency) of when the trial starts, and how long each trial lasted (duration). <br> <strong>results:</strong> A vector of which target was hit for each trial (0 if the trial was aborted before a target was hit) <br> <strong>outcome:</strong> A vector indicating the outcome of each trail (1: hit, 0: abort, -1: miss) <br> <strong>subject:</strong> The coded subject number <br> <strong>session:</strong> The session number. Please note that the session numbers are for specific tasks, so even though 2D sessions began on the third day of experiments, the 2D runs are listed as session 1, 2, and 3 as they are the first, second, and third 2D sessions. <br> <strong>axis:</strong> The axis of control. Either LR (horizontal only, Left-Right), UD (vertical only, Up-Down), or 2D (both horizontal and vertical control). <br> <strong>task:</strong> The control paradigm used. Options are MI (motor imagery), OSA (overt spatial attention), MIOSA (MI and OSA together), MIOSA1 (MI controls horizontal axis, OSA controls vertical. Referred to as MI/OSA in the paper), or MIOSA2 (MI controls vertical axis, OSA controls horizontal. Referred to as OSA/MI in the paper). <br> <strong>run:</strong> The run number
DOI: 10.7303/syn50900302.1
title: Validation of enhancer regions in primary human neural progenitor cells using capture STARR-seq
DOI: 10.5883/ds-dinometa
title: Description of two new species of Dinometa with remarks on D. maputuana (Lepidoptera, Lasiocampidae)

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/ds-rrpol
title: DNA barcodes provide insights into the diversity and biogeography of the non biting midge Polypedilum (Diptera, Chironomidae) in South America

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:acp7135
title: Overview of Barcode Index Number - BOLD:ACP7135

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aby2692
title: Overview of Barcode Index Number - BOLD:ABY2692

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.23872188
title: ECOPICS_Mx_Water infiltration of the soils from Pico de Orizaba Protected Park

description: Mountain soil water infiltration.
DOI: 10.6084/m9.figshare.23872188.v2
title: ECOPICS_Mx_Water infiltration of the soils from Pico de Orizaba Protected Park

description: Mountain soil water infiltration.
DOI: 10.6084/m9.figshare.23872188.v1
title: Untitled Item

description: Mountain soil water infiltration.
DOI: 10.18112/openneuro.ds004656.v1.0.0
title: Neural reactivity to visual food stimuli is reduced in some areas of the brain during evening hours compared to morning hours: an fMRI study in women
DOI: 10.5281/zenodo.8215963
title: MotionNet

description: <strong>Introduction</strong> This dataset contains the trained models for our MotionNet code, which can be found at (https://github.com/merlresearch/MotionNet) <strong>At a Glance</strong> The size of the unzipped dataset is ~175MB and contains the following files: model.pth model_MGDA.pth <strong>Citation</strong> If you use the MotionNet dataset in your research, please cite our contribution: <pre><code>@inproceedings{wu2020motionnet, title={MotionNet: Joint Perception and Motion Prediction for Autonomous Driving Based on Bird's Eye View Maps}, author={Wu, Pengxiang and Chen, Siheng and Metaxas, Dimitris}, booktitle={CVPR}, year={2020} }</code></pre> <strong>License</strong> The MotionNet dataset is released under CC-BY-SA-4.0 license. All data: <pre><code>Created by Mitsubishi Electric Research Laboratories (MERL), 2020, 2023 SPDX-License-Identifier: CC-BY-SA-4.0 </code></pre>
DOI: 10.5281/zenodo.8215962
title: MotionNet

description: <strong>Introduction</strong> This dataset contains the trained models for our MotionNet code, which can be found at (https://github.com/merlresearch/MotionNet) <strong>At a Glance</strong> The size of the unzipped dataset is ~175MB and contains the following files: model.pth model_MGDA.pth <strong>Citation</strong> If you use the MotionNet dataset in your research, please cite our contribution: <pre><code>@inproceedings{wu2020motionnet, title={MotionNet: Joint Perception and Motion Prediction for Autonomous Driving Based on Bird's Eye View Maps}, author={Wu, Pengxiang and Chen, Siheng and Metaxas, Dimitris}, booktitle={CVPR}, year={2020} }</code></pre> <strong>License</strong> The MotionNet dataset is released under CC-BY-SA-4.0 license. All data: <pre><code>Created by Mitsubishi Electric Research Laboratories (MERL), 2020, 2023 SPDX-License-Identifier: CC-BY-SA-4.0 </code></pre>
DOI: 10.25345/c59p2wh1x
title: MassIVE MSV000092597 - Native metabolomics of CutA with Cell Extracts
title: Native metabolomics was performed using CutA proteins of Synechococcus elongatus sp. PCC 7942 or E.coli. Crude cell extract or a mix of co-purified polar compounds were offered as putative binding partners.
DOI: 10.25345/c55x25p7j
title: MassIVE MSV000092598 - Homoserine lactone standards and heterologous expression of LuxI family synthases in E. coli
title: This dataset contains spectra of LuxI family synthases heterologously expressed and induced in E. coli as well as commercial homoserine lactones. The work (proposal:https://doi.org/10.46936/10.25585/60001376) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.25345/c5251fw27
title: MassIVE MSV000092599 - Mechanisms of soil microbial adaptation to long-term chronic warming
title: Microbes are responsible for cycling carbon (C) through soils, and predicted changes in soil C stocks under climate change are highly sensitive to shifts in the mechanisms assumed to control the microbial physiological response to warming. Two mecha-nisms have been suggested to explain the long-term warming impact on microbial physiology: microbial thermal acclimation and changes in the quantity and quality of substrates available for microbial metabolism. Yet studies disentangling these two mechanisms are lacking. To resolve the drivers of changes in microbial physiology in response to long-term warming, we sampled soils from 13- and 28-year- old soil warming experiments in different seasons. We performed short-term laboratory incubations across a range of temperatures to measure the relationships between temperature sensitivity of physiology (growth, respiration, carbon use efficiency, and extracellular enzyme activity) and the chemical composition of soil organic matter. We observed apparent thermal acclimation of microbial respiration, but only in sum-mer, when warming had exacerbated the seasonally-induced, already small dissolved organic matter pools. Irrespective of warming, greater quantity and quality of soil carbon increased the extracellular enzymatic pool and its temperature sensitivity. We propose that fresh litter input into the system seasonally cancels apparent thermal acclimation of C-cycling processes to decadal warming. Our findings reveal that long-term warming has indirectly affected microbial physiology via reduced C availability in this system, implying that earth system models including these negative feedbacks may be best suited to describe long-term warming effects on these soils. Citation: Domeignoz-Horta LA, Pold G, Erb H, Sebag D, Verrecchia E, Northen T, Louie K, Eloe-Fadrosh E, Pennacchio C, Knorr MA, Frey SD, Melillo JM, DeAngelis KM. Substrate availability and not thermal acclimation controls microbial temperature sensitivity response to long-term warming. Glob Chang Biol. 2023 Mar;29(6):1574-1590. doi: 10.1111/gcb.16544. The work (proposal:https://doi.org/10.46936/10.25585/60001340) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.25345/c5xd0r77n
title: MassIVE MSV000092600 - Genomic basis of the ecological success of nectar yeasts in their carbon-stressed and nitrogen-limited environments
title: The goal of the research is to identify the physiological pathways that influence survival, growth, and competitive ability of the species of yeast that colonize floral nectar. Initially sterile, floral nectar is colonized by multiple species of microbes via insects and birds that visit the flowers for nectar. Once colonized, the microbes face two major challenges of the nectar environment: high osmotic pressure, caused by excessive carbon supply, and strong resource competition, caused by low nitrogen availability. We propose to study the genetic basis of the unique ecological strategies that allow nectar yeasts to cope with these challenges, and to determine the effects that these genes may have on microbe microbe interactions in nectar and the chemical properties of nectar that affect pollinator preference. The work (proposal:https://doi.org/10.46936/10.25585/60001130) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.25345/c5sq8qt68
title: MassIVE MSV000092601 - Metabolomics of novel Actinobacteria from oligotrophic subsurface soils
title: There is a growing interest in the role of metabolite exchange (cross-feeding) in microbial community stability, resilience and longitudinal dynamics. Though the number of genome sequences available to researchers continues to grow, we still have a poor understanding of how to relate genomic information to exometabolite production/consumption capacity and how that capacity changes across different conditions. Our experimental design will be to obtain polar metabolomes and transcriptomes simultaneously from three conditions for each strain: Condition 1) mid-logarithmic phase (control); Condition 2) trace metal limited stationary phase; and Condition 3) nitrogen limited stationary phase. These experimental conditions were chosen because the bioavailability of trace metals and nitrogen in subsurface environments can be variable and nutrient availability has been shown to influence exometabolite profiles of Actinobacteria (Senges, et al 2018 PNAS). The work (proposal:https://doi.org/10.46936/10.25585/60001177) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.6084/m9.figshare.23878488
title: Impact of Self-Care Program on Anxiety, Loneliness and Satisfaction with Life in High School Community

description: This study examined the effectiveness of the program on anxiety, loneliness, and satisfaction with life in high school students and staff in a randomized, wait-list control trial with baseline and post-intervention assessments. The sample consists of a total of 203 high school students and staff randomized into a control-waitlisted group (Students: n=57 and Staff: n=45) and a Heartfulness group (Students: n=57 and Staff: n=44) from three schools.
DOI: 10.6084/m9.figshare.3761562.v2667
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5519/qd.k682lcsb
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (20 records)
DOI: 10.6084/m9.figshare.23878644
title: Data Canada Study 1

description: SPSS files with data from canadian students used in study 1 of the paper "Shame and anger differentially predict disidentification between collectivistic and individualistic societies" published in PLOS One.
DOI: 10.6084/m9.figshare.23878644.v1
title: Data Canada Study 1

description: SPSS files with data from canadian students used in study 1 of the paper "Shame and anger differentially predict disidentification between collectivistic and individualistic societies" published in PLOS One.
DOI: 10.6084/m9.figshare.23878890
title: Individualism, atmospheric variables, mediators, and confounders

description: Data on 100 countries for study "How atmospheric variables explain national differences in individualism"
DOI: 10.6084/m9.figshare.23878890.v1
title: Individualism, atmospheric variables, mediators, and confounders

description: Data on 100 countries for study "How atmospheric variables explain national differences in individualism"
DOI: 10.6075/j0nk3f6d
title: Data from: Plankton energy flows using a global size-structured and trait-based model

description: Model output was created using the high-performance computing support from Cheyenne (https://doi.org/10.5065/D6RX99HX) provided by NCAR's Computational and Information Systems Laboratory, sponsored by the National Science Foundation (NSF).
description: Abstract: Plankton community models are critical tools for understanding the processes that shape marine plankton communities, how plankton communities impact biogeochemical cycles, and the feedbacks between community structure and function. Here, using the flexible Marine Biogeochemistry Library (MARBL), we present the Size-based Plankton Ecological TRAits (MARBL-SPECTRA) model, which is designed to represent a diverse plankton community while remaining computationally tractable. MARBL-SPECTRA is composed of nine phytoplankton and six zooplankton size classes represented using allometric scaling relationships for physiological traits and interactions within multiple functional types. MARBL-SPECTRA is embedded within the global ocean component of the Community Earth System Model (CESM) and simulates large-scale, emergent patterns in phytoplankton growth limitation, plankton phenology, plankton generation time, and trophic transfer efficiency. The model qualitatively reproduces observed global patterns of surface nutrients, chlorophyll biomass, net primary production, and the biogeographies of a range of plankton size classes. In addition, the model simulates how predator:prey dynamics and trophic efficiency vary across gradients in total ecosystem productivity. Shorter food chains that export proportionally more carbon from the surface to the ocean interior occur in productive regions, whereas in oligotrophic regions, the food chains are relatively long and export less organic matter from the surface. The union of functional type modeling with size-resolved, trait-based modeling approaches allows MARBL-SPECTRA to capture both the large-scale elemental cycles and the structure of planktonic food webs affecting trophic transfer efficiency. MARBL-SPECTRA simulations are forced with the Common Ocean-Ice Reference Experiment (CORE-II) data set (Large et al. 2009). The forcing period from 1948 to 2009 (62 years) underwent two repeating cycles, however, we focused our analyses on the final 20 years of the simulation (1990-2009). MARBL-SPECTRA has been implemented in the Parallel Ocean Program version 2 (POP2; the CESM2 ocean component). The output includes monthly diagnostic and prognostic variables with nominal horizontal resolution of 1 degree, with 60 vertical depth levels ranging in thickness from 10 m in the upper 150m to 250 m in the deep ocean. For more information on the setup, processing, and analysis, please refer to Negrete García et al. 2022 (DOI to be determined later).
DOI: 10.6075/j0mk6d3g
title: Data from: Metabolic rates in the Agua Hedionda Lagoon during the 2020 Southern California red tide event

description: A time series from autonomous SeapHOx sensors (pH, dissolved oxygen (DO), salinity, temperature, and pressure) in the Agua Hedionda Lagoon in Carlsbad, CA captured baseline conditions in 2018 and the effects of a massive red tide occurring along the Southern & Baja California coast during the spring of 2020. Biogeochemical data (pH and DO) were examined using an open-source model designed to filter out the influence of tides and estimate net ecosystem metabolism (NEM).
DOI: 10.5519/qd.vkfv8j5v
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (33 records)
DOI: 10.5281/zenodo.8216045
title: peltospira_delicata_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.8216044
title: peltospira_delicata_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.8216026
title: adapt40411_03l012_202002022000_i00030000n1.fts.gz

description: ADAPT synoptic map of the photospheric magnetic flux as measured by the HMI instrument on the SDO satellite. Relevant descriptive information such as model version and parameter values can be found in the fits file header.
DOI: 10.6084/m9.figshare.23879226
title: Datasets of all studies of the paper "Shame and anger differentially predict disidentification between collectivistic and individualistic societies" to be published in PLOS One.

description: Datasets of all studies of the paper "Shame and anger differentially predict disidentification between collectivistic and individualistic societies" to be published in PLOS One.
DOI: 10.5519/qd.9s1nunr2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (72 records)
DOI: 10.6084/m9.figshare.22233868.v2
title: Stimulating Innovative Learning with Tech: Artefacts Influence Students’ Actions

description: Dataset in CSV file -
DOI: 10.5281/zenodo.8216088
title: Photovoice and case based learning activities in higher education (University of Zaragoza - Social Work degree)

description: The collected variables are: students data (gender, age, university admittance marks from 0 to 14), academic perforrnace of photovoice (PV) activity (from 0 to 10), academic performance of Case based learning (CBL) activity (form 0 to 10), order of the exercises, satisfaction with the photovoice activity, satisfaction with the CBL activity, items and overall self-efficacy scale score
DOI: 10.5281/zenodo.8216087
title: Photovoice and case based learning activities in higher education (University of Zaragoza - Social Work degree)

description: The collected variables are: students data (gender, age, university admittance marks from 0 to 14), academic perforrnace of photovoice (PV) activity (from 0 to 10), academic performance of Case based learning (CBL) activity (form 0 to 10), order of the exercises, satisfaction with the photovoice activity, satisfaction with the CBL activity, items and overall self-efficacy scale score
DOI: 10.25800/kc3j-xz88
title: DSA-110 Data for Candidate Fast Radio Burst 220207aabh

description: Data associated with DSA-110 candidate transient.
DOI: 10.21227/z5je-pt06
title: Mr.

description: This dataset was utilized for preparing an article titlled submitted to the IEEE Transactions on Evolutionary Computtations. Based on critical review and experimennt, the  article intends to shed some light on thee  way crossover-mutation intraction balannce in GA could be comprehend in the view tthat current literature is short of prooviding generalized rule that guides determination of tha balance oof the two operators across doomains of problems. For the experiimental part of the work, we created a hypoyhetical spatial study of 400 cells represented  by its cells centroid coordinates. The 400 cells hhave been populated by seven lannd use types and popullation density. the dataset also conttains neighborhood IDs of each land cell.
DOI: 10.25800/xth9-3528
title: DSA-110 Data for Candidate Fast Radio Burst 220207aabh

description: Data associated with DSA-110 candidate transient.
DOI: 10.25800/29vv-1d98
title: DSA-110 Data for Candidate Fast Radio Burst 220207aabh

description: Data associated with DSA-110 candidate transient.