cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19336211
title: Additional file 2 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 2: Supplementary Table S4. The conditional probabilities between bacteria and differential metabolites.
DOI: 10.6084/m9.figshare.19336211.v1
title: Additional file 2 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 2: Supplementary Table S4. The conditional probabilities between bacteria and differential metabolites.
DOI: 10.6084/m9.figshare.19336214
title: Additional file 3 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 3: Supplementary Table S5. The taxonomy of bacteria associated with differential metabolites.
DOI: 10.6084/m9.figshare.19336214.v1
title: Additional file 3 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 3: Supplementary Table S5. The taxonomy of bacteria associated with differential metabolites.
DOI: 10.6084/m9.figshare.19336217
title: Additional file 4 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 4: Supplementary Table S6. The conditional probabilities between bacteria and differential metabolites.
DOI: 10.6084/m9.figshare.19336217.v1
title: Additional file 4 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 4: Supplementary Table S6. The conditional probabilities between bacteria and differential metabolites.
DOI: 10.6084/m9.figshare.19336220
title: Additional file 5 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 5: Supplementary Table S7. The taxonomy of fungi associated with differential metabolites.
DOI: 10.6084/m9.figshare.19336220.v1
title: Additional file 5 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 5: Supplementary Table S7. The taxonomy of fungi associated with differential metabolites.
DOI: 10.6084/m9.figshare.19336223
title: Additional file 6 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 6: Supplementary Table S1. The information on alkaloidal metabolites of the samples.
DOI: 10.6084/m9.figshare.19336223.v1
title: Additional file 6 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 6: Supplementary Table S1. The information on alkaloidal metabolites of the samples.
DOI: 10.6084/m9.figshare.19336226
title: Additional file 7 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 7: Supplementary Table S2. The differential metabolites (Luquan vs Weixi).
DOI: 10.6084/m9.figshare.19336226.v1
title: Additional file 7 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 7: Supplementary Table S2. The differential metabolites (Luquan vs Weixi).
DOI: 10.6084/m9.figshare.19336229
title: Additional file 8 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 8: Supplementary Table S3. The differential metabolites (Weixi vs Luquan).
DOI: 10.6084/m9.figshare.19336229.v1
title: Additional file 8 of Metabolomics and microbiome reveal potential root microbiota affecting the alkaloidal metabolome in Aconitum vilmorinianum Kom.

description: Additional file 8: Supplementary Table S3. The differential metabolites (Weixi vs Luquan).
DOI: 10.6084/m9.figshare.15141939
title: miR-152-3p aggravates vascular endothelial cell dysfunction by targeting DEAD-box helicase 6 (DDX6) under hypoxia

description: Stroke is a main cause of disability and death worldwide, and ischemic stroke accounts for most stroke cases. Recently, microRNAs (miRNAs) have been verified to play critical roles in the development of stroke. Herein, we explored effects of miR-152-3p on vascular endothelial cell functions under hypoxia. Human umbilical vein endothelial cells (HUVECs) were treated with hypoxia to mimic cell injury <i>in vitro</i>. Reverse transcription quantitative polymerase chain reaction revealed that miR-152-3p exhibited high expression in HUVECs treated with hypoxia. The inhibition of miR-152-3p reversed hypoxia-induced decrease in cell viability and the increase in angiogenesis, according to the results of cell counting kit-8 assays and tube formation assays. miR-152-3p inhibition reversed the increase in endothelial cell permeability mediated by hypoxia, as shown by endothelial cell permeability <i>in vitro</i> assays. In addition, the increase in protein levels of angiogenetic markers and the decrease in levels of tight junction proteins induced by hypoxia were reversed by miR-152-3p inhibition. Mechanistically, miR-152-3p directly targets 3ʹ-untranslated region of DEAD-box helicase 6 (DDX6), which was confirmed by luciferase reporter assays. DDX6 is lowly expressed in HUVECs under hypoxic condition, and mRNA expression and protein level of DDX6 were upregulated in HUVECs due to miR-152-3p inhibition. Rescue assays showed that DDX6 knockdown reversed effects of miR-152-3p on cell viability, angiogenesis and endothelial permeability. The results demonstrated that miR-152-3p aggravates vascular endothelial cell dysfunction by targeting DDX6 under hypoxia.
DOI: 10.6084/m9.figshare.15141939.v1
title: miR-152-3p aggravates vascular endothelial cell dysfunction by targeting DEAD-box helicase 6 (DDX6) under hypoxia

description: Stroke is a main cause of disability and death worldwide, and ischemic stroke accounts for most stroke cases. Recently, microRNAs (miRNAs) have been verified to play critical roles in the development of stroke. Herein, we explored effects of miR-152-3p on vascular endothelial cell functions under hypoxia. Human umbilical vein endothelial cells (HUVECs) were treated with hypoxia to mimic cell injury <i>in vitro</i>. Reverse transcription quantitative polymerase chain reaction revealed that miR-152-3p exhibited high expression in HUVECs treated with hypoxia. The inhibition of miR-152-3p reversed hypoxia-induced decrease in cell viability and the increase in angiogenesis, according to the results of cell counting kit-8 assays and tube formation assays. miR-152-3p inhibition reversed the increase in endothelial cell permeability mediated by hypoxia, as shown by endothelial cell permeability <i>in vitro</i> assays. In addition, the increase in protein levels of angiogenetic markers and the decrease in levels of tight junction proteins induced by hypoxia were reversed by miR-152-3p inhibition. Mechanistically, miR-152-3p directly targets 3ʹ-untranslated region of DEAD-box helicase 6 (DDX6), which was confirmed by luciferase reporter assays. DDX6 is lowly expressed in HUVECs under hypoxic condition, and mRNA expression and protein level of DDX6 were upregulated in HUVECs due to miR-152-3p inhibition. Rescue assays showed that DDX6 knockdown reversed effects of miR-152-3p on cell viability, angiogenesis and endothelial permeability. The results demonstrated that miR-152-3p aggravates vascular endothelial cell dysfunction by targeting DDX6 under hypoxia.
DOI: 10.6084/m9.figshare.19336245
title: Additional file 2 of DNA demethylation affects imprinted gene expression in maize endosperm

description: Additional file 2. Summary of data generated in this study.
DOI: 10.6084/m9.figshare.19336245.v1
title: Additional file 2 of DNA demethylation affects imprinted gene expression in maize endosperm

description: Additional file 2. Summary of data generated in this study.
DOI: 10.6084/m9.figshare.19336248
title: Additional file 3 of DNA demethylation affects imprinted gene expression in maize endosperm

description: Additional file 3. List of DMRs between zmros1 and WT.
DOI: 10.6084/m9.figshare.19336248.v1
title: Additional file 3 of DNA demethylation affects imprinted gene expression in maize endosperm

description: Additional file 3. List of DMRs between zmros1 and WT.
DOI: 10.6084/m9.figshare.19336251
title: Additional file 4 of DNA demethylation affects imprinted gene expression in maize endosperm

description: Additional file 4. List of DEGs between zmros1 and WT.
DOI: 10.6084/m9.figshare.19336251.v1
title: Additional file 4 of DNA demethylation affects imprinted gene expression in maize endosperm

description: Additional file 4. List of DEGs between zmros1 and WT.
DOI: 10.6084/m9.figshare.19336254
title: Additional file 5 of DNA demethylation affects imprinted gene expression in maize endosperm

description: Additional file 5. Imprinted genes from literatures and this study.
DOI: 10.6084/m9.figshare.19336254.v1
title: Additional file 5 of DNA demethylation affects imprinted gene expression in maize endosperm

description: Additional file 5. Imprinted genes from literatures and this study.
DOI: 10.6084/m9.figshare.19336257
title: Additional file 6 of DNA demethylation affects imprinted gene expression in maize endosperm

description: Additional file 6. List of genes that are related with ZmROS1ab-sensitive DMRs.
DOI: 10.6084/m9.figshare.19336257.v1
title: Additional file 6 of DNA demethylation affects imprinted gene expression in maize endosperm

description: Additional file 6. List of genes that are related with ZmROS1ab-sensitive DMRs.
DOI: 10.6084/m9.figshare.25103486
title: Table S3 Virulome.docx

description: List of virulence genes detected in Vibrio cholerae NB-183
DOI: 10.6084/m9.figshare.14617754
title: Circular RNAs hsa-circ0000175 and hsa-circ0044235 in plasma are novel biomarkers for new-onset rheumatoid arthritis

description: Circular RNAs (circRNAs) are a class of non-coding RNAs that could serve as potential molecular markers for disease diagnosis. However, the role of circRNAs in plasma from new-onset rheumatoid arthritis (RA) has not been extensively investigated. In this study, the expression of hsa-circ0000175 and hsa-circ0044235 in plasma from RA patients, healthy controls (HCs), systemic lupus erythematosus (SLE) patients, osteoarthritis (OA), and undiagnosed arthritis (UA) patients were determined by quantitative reverse transcription-polymerase chain reaction (qRT-PCR). Correlation analysis was used to assess the correlation of the two circRNAs and clinical variables of RA. The receiver operating characteristic (ROC) curves were created to evaluate the diagnostic value and multivariate analysis (logistic regression) was performed to analyse the risk factors. We confirmed that hsa-circ0000175 was significantly elevated in plasma from patients with new-onset RA compared with HC and patients with new-onset SLE, but significantly was reduced when compared with OA + UA patients. Hsa-circ0044235 was found to be significantly decreased in plasma from patients with new-onset RA compared with HC and OA + UA patients, but was significantly increased compared with SLE patients. The expression of plasma hsa-circ0000175 in new-onset RA patients was associated with platelet count (PLT), plateletcrit (PCT), and platelet large cell ratio (PLR), the expression of plasma hsa-circ0044235 new-onset RA patients was associated with swollen joint count (SJC), painful joint count (PJC), and disease activity score 28 (DAS28). ROC curve analysis suggested that the combination of hsa-circ0000175 and hsa-circ0044235 has some value in the diagnosis of new-onset RA from HC, patients with SLE and patients with OA + UA. The logistic regression analysis revealed that the expression of hsa-circ0000175 and hsa-circ0044235 in plasma were risk factors for RA. This study suggests that the combination of plasma hsa-circ0000175 and hsa-circ0044235 improves the diagnostic accuracy for new-onset RA. Moreover, the expression levels of plasma hsa-circ0000175 and hsa-circ0044235 were associated with disease activity and severity of RA.
DOI: 10.6084/m9.figshare.14617754.v1
title: Circular RNAs hsa-circ0000175 and hsa-circ0044235 in plasma are novel biomarkers for new-onset rheumatoid arthritis

description: Circular RNAs (circRNAs) are a class of non-coding RNAs that could serve as potential molecular markers for disease diagnosis. However, the role of circRNAs in plasma from new-onset rheumatoid arthritis (RA) has not been extensively investigated. In this study, the expression of hsa-circ0000175 and hsa-circ0044235 in plasma from RA patients, healthy controls (HCs), systemic lupus erythematosus (SLE) patients, osteoarthritis (OA), and undiagnosed arthritis (UA) patients were determined by quantitative reverse transcription-polymerase chain reaction (qRT-PCR). Correlation analysis was used to assess the correlation of the two circRNAs and clinical variables of RA. The receiver operating characteristic (ROC) curves were created to evaluate the diagnostic value and multivariate analysis (logistic regression) was performed to analyse the risk factors. We confirmed that hsa-circ0000175 was significantly elevated in plasma from patients with new-onset RA compared with HC and patients with new-onset SLE, but significantly was reduced when compared with OA + UA patients. Hsa-circ0044235 was found to be significantly decreased in plasma from patients with new-onset RA compared with HC and OA + UA patients, but was significantly increased compared with SLE patients. The expression of plasma hsa-circ0000175 in new-onset RA patients was associated with platelet count (PLT), plateletcrit (PCT), and platelet large cell ratio (PLR), the expression of plasma hsa-circ0044235 new-onset RA patients was associated with swollen joint count (SJC), painful joint count (PJC), and disease activity score 28 (DAS28). ROC curve analysis suggested that the combination of hsa-circ0000175 and hsa-circ0044235 has some value in the diagnosis of new-onset RA from HC, patients with SLE and patients with OA + UA. The logistic regression analysis revealed that the expression of hsa-circ0000175 and hsa-circ0044235 in plasma were risk factors for RA. This study suggests that the combination of plasma hsa-circ0000175 and hsa-circ0044235 improves the diagnostic accuracy for new-onset RA. Moreover, the expression levels of plasma hsa-circ0000175 and hsa-circ0044235 were associated with disease activity and severity of RA.
DOI: 10.6084/m9.figshare.25103531
title: Table_S3_Virulome.docx

description: Table_S3 Virulome
DOI: 10.15468/ze4jqr
title: 2022_AGIR Ecologique_1

description: 2022_AGIR-Ecologique:AGIR Ecologique
DOI: 10.15468/6dtmgw
title: Parc éolien de Cuxac

description: Parc éolien de Cuxac situé sur la commune de Cuxac d'Aude, d'une puissance de 11,5 MW situé sur des terrains agricoles dominés par de la viticulture
DOI: 10.15468/fw373c
title: PC 078 193 19 E0005 Chateau de Dampierre en Yvelines- restauration extérieure du chateau, des douves et des galeries - [SUIVI] Suivi réglementaire 2021 des espèces protégées du domaine de Dampierre

description: Les données concernent le suivi de la mise en œuvre des mesures de la séquence Eviter-Réduire-Compenser sur les espèces protégées objets des dérogations accordées par les arrêtés préfectoraux du 13 novembre 2019 (arrêté n°78-2019-11-13-005) et du 29 juin 2020 (arrêté n°2020 DRIEE-IF/091). Les espèces sont : Hirondelle de fenêtre, Effraie des clochers, Chauves-souris.
DOI: 10.15468/mffa75
title: 2022_LPO PACA_14

description: 2022_LPO-PACA_PNA-castor:LPO PACA:PNA Loutre - Campagnol amphibie - Castor
DOI: 10.15468/aggn7e
title: 2022_LPO PACA_8

description: 2022_LPO-PACA_PNA-pie-grieche:LPO PACA:Plan National d'Actions Pies-grièches
DOI: 10.15468/9ekne5
title: 2022_Réserve Naturelle de Camargue_1

description: 2021_RNNC:Réserve Naturelle de Camargue
DOI: 10.15468/pt28d7
title: 2022_LPO PACA_5

description: 2022_LPO-PACA_ABC-Grasse:LPO PACA
DOI: 10.15468/gc8zdw
title: 2022_LPO PACA_9

description: 2022_LPO-PACA_PNA-vautour-fauve:LPO PACA:PNA Vautours
DOI: 10.15468/8xcm73
title: 2022_LPO PACA_12

description: 2022_LPO-PACA_PNA-campagnol:LPO PACA:PNA Loutre - Campagnol amphibie - Castor
DOI: 10.15468/kvm7yj
title: 2022_LPO PACA_2

description: 2021_LPO-PACA_PNA-milan-royal_2:LPO PACA:PNA Milan Royal
DOI: 10.15468/5p65yk
title: [SUIVI] 2021 Inventaire annuel parc éolien de Cabalas (34) - [SUIVI] 2021 mortalité avifaune et chiroptères Cabalas

description: Suivi de mortalité avifaune et chiroptère en 2021 sur le parc de Cabalas. Ce parc est constitué de 13 éoliennes et se situe sur la commune de Joncels (34).
DOI: 10.6084/m9.figshare.6753476
title: Additional file 2: of Metagenomic analysis of basal ice from an Alaskan glacier

description: Supplementary Tables. (XLSX 142 kb)
DOI: 10.15468/k2u442
title: [SUIVI] 2021 Inventaire annuel 2 parc éolien de Cabalas (34) - [SUIVI] 2021 - suivi avifaune - parc éolien de cabalas

description: Suivi ornithologique 2021 du parc éolien de cabalas situé sur la commune de Joncels (34). Le parc est composé de 13 éoliennes.
DOI: 10.15468/6v9v6q
title: Recorbet_datafaunefrance2020 - FF_reptile(saufTH)_amphib_2017-2021

description: Données personnelles de Bernard recorbet Faune france pour les cortèges reptiles et amphibiens sauf la TH de 2017 à 2021
DOI: 10.6084/m9.figshare.6753476.v1
title: Additional file 2: of Metagenomic analysis of basal ice from an Alaskan glacier

description: Supplementary Tables. (XLSX 142 kb)
DOI: 10.15468/3xphxb
title: 2022_GRENHA_2

description: 2022_GRENHA:GRENHA / données fournies par GRENHA en 2022
DOI: 10.15468/8z3q4v
title: 2022_LPO PACA_15

description: 2022_LPO-PACA_PNA-cheveche:LPO PACA:Plan National d'Actions Chevêche d'Athéna
DOI: 10.15468/ksywq6
title: Parc éolien Gâtinais I - Inventaire 2021 parc éolien du Gâtinais 1 (77)

description: Données brutes du suivi d'activité sur le parc éolien du Gâtinais 1 (77)
DOI: 10.6084/m9.figshare.21433545
title: The data for the manuscript "Combining paleomagnetic and Re–Os isotope data to date hydrocarbon generation and accumulation processes"

description: The manuscript "Combining paleomagnetic and Re–Os isotope data to date hydrocarbon generation and accumulation processes" is submitted to the journal JGR, and the data here were used to support the viewpoints  in the manuscript. This dataset include paleomagnetic, rock magnetic and geochemical data, which were present in one excle file and four word files.
DOI: 10.15468/epwxt2
title: [SUIVI] 2021 Suivis environnementaux parc éolien de Bétheniville - [SUIVI] 2021 Avifaune Bétheniville

description: Suivi avifaune 2021 du parc éolien de Bétheniville
DOI: 10.15468/ma4v2q
title: 2022_SPECE_1

description: 2022_SPECE:SPECE / données fournies par SPECE en 2022
DOI: 10.15468/gs62sm
title: Parc éolien de La Baume - La Baume : suivi de la mortalité 2018-2021

description: Suivi de la mortalité des oiseaux et des chauves-souris 2018-2021
DOI: 10.15468/mkzaa5
title: 2022_SOPTOM_1

description: 2022_SOPTOM:SOPTOM / données fournies par SOPTOM en 2022
DOI: 10.15468/562u99
title: 2022_LPO PACA_11

description: 2022_LPO-PACA_PNA-vautour-moine:LPO PACA:Plan National d'Actions Vautour moine
DOI: 10.15468/ppgk6n
title: 2022_Amis des Marais du Vigueirat_2

description: 2022_AMV:Amis des Marais du Vigueirat
DOI: 10.15468/s5xh8f
title: Parc éolien de Bétheniville - Béthenville - 2021 - suivi post implantation de parc éolien

description: Suivi postimplantation de parc éolien
DOI: 10.26188/25222580.v1
title: Simulated datasets

description: Simulated datasets used to benchmark CCMetagen in its original publication: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02014-2<br>To download:curl "https://mediaflux.researchsoftware.unimelb.edu.au:443/mflux/share.mfjp?_token=GI4PQtgSDXkqdZslFm3x1128247853&browser=true&filename=simulated_datasets.zip" -d browser=false -o simulated_datasets.zip.zip<br><br>
DOI: 10.26188/25222580
title: Simulated datasets

description: Simulated datasets used to benchmark CCMetagen in its original publication: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02014-2<br>To download:curl "https://mediaflux.researchsoftware.unimelb.edu.au:443/mflux/share.mfjp?_token=GI4PQtgSDXkqdZslFm3x1128247853&browser=true&filename=simulated_datasets.zip" -d browser=false -o simulated_datasets.zip.zip<br><br>
DOI: 10.6084/m9.figshare.7802138
title: MOESM1 of Combined analysis and validation for DNA methylation and gene expression profiles associated with prostate cancer

description: Additional file 1. Supplementary S1-PAS protein sequence.
DOI: 10.6084/m9.figshare.7802138.v1
title: MOESM1 of Combined analysis and validation for DNA methylation and gene expression profiles associated with prostate cancer

description: Additional file 1. Supplementary S1-PAS protein sequence.
DOI: 10.26188/25222598
title: Indexed NCBI nt database - without unclassified environmental sequences

description: Indexed NCBI nucleotide database that excludes environmental (unclassified) sequences, ready-to-use with KMA and CCMetagen.<br>The database can be downloaded directly form the command line with:curl "https://mediaflux.researchsoftware.unimelb.edu.au:443/mflux/share.mfjp?_token=ko6MbZXl7FWjAS3jsItV1128247851&browser=true&filename=ncbi_nt_no_env_11jun2019.zip" -d browser=false -o ncbi_nt_no_env_11jun2019.zip<br><br>
DOI: 10.26188/25222598.v1
title: Indexed NCBI nt database - without unclassified environmental sequences

description: Indexed NCBI nucleotide database that excludes environmental (unclassified) sequences, ready-to-use with KMA and CCMetagen.<br>The database can be downloaded directly form the command line with:curl "https://mediaflux.researchsoftware.unimelb.edu.au:443/mflux/share.mfjp?_token=ko6MbZXl7FWjAS3jsItV1128247851&browser=true&filename=ncbi_nt_no_env_11jun2019.zip" -d browser=false -o ncbi_nt_no_env_11jun2019.zip<br><br>
DOI: 10.5517/ccdc.csd.cc2fsn1y
title: CCDC 2258010: Experimental Crystal Structure Determination

description: Related Article: Jingping Hu, Jing Xu|2023|Chin.Chem.Lett.|35|108733|doi:10.1016/j.cclet.2023.108733
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fsn30
title: CCDC 2258012: Experimental Crystal Structure Determination

description: Related Article: Jingping Hu, Jing Xu|2023|Chin.Chem.Lett.|35|108733|doi:10.1016/j.cclet.2023.108733
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fsn41
title: CCDC 2258013: Experimental Crystal Structure Determination

description: Related Article: Jingping Hu, Jing Xu|2023|Chin.Chem.Lett.|35|108733|doi:10.1016/j.cclet.2023.108733
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.