cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc4kcfg
title: CCDC 135855: Experimental Crystal Structure Determination

description: Related Article: B.Dalhus, C.H.Gorbitz|1999|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|55|1547|doi:10.1107/S0108270199006162
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4kcgh
title: CCDC 135856: Experimental Crystal Structure Determination

description: Related Article: B.Dalhus, C.H.Gorbitz|1999|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|55|1547|doi:10.1107/S0108270199006162
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4kchj
title: CCDC 135857: Experimental Crystal Structure Determination

description: Related Article: B.Dalhus, C.H.Gorbitz|1999|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|55|1547|doi:10.1107/S0108270199006162
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4kcjk
title: CCDC 135858: Experimental Crystal Structure Determination

description: Related Article: B.Dalhus, C.H.Gorbitz|1999|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|55|1547|doi:10.1107/S0108270199006162
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4kckl
title: CCDC 135859: Experimental Crystal Structure Determination

description: Related Article: B.Dalhus, C.H.Gorbitz|1999|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|55|1547|doi:10.1107/S0108270199006162
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4kclm
title: CCDC 135860: Experimental Crystal Structure Determination

description: Related Article: B.Dalhus, C.H.Gorbitz|1999|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|55|1547|doi:10.1107/S0108270199006162
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4k954
title: CCDC 135785: Experimental Crystal Structure Determination

description: Related Article: L.J.Fitzgerald, R.E.Gerkin|1999|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|55|1556|doi:10.1107/S0108270199006289
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4kbtt
title: CCDC 135836: Experimental Crystal Structure Determination

description: Related Article: A.Gzella, U.Wrzeciono, W.Poppel|1999|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|55|1562|doi:10.1107/S0108270199005880
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4kc12
title: CCDC 135843: Experimental Crystal Structure Determination

description: Related Article: F.Seela, M.Zulauf, H.Reuter, G.Kastner|1999|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|55|1560|doi:10.1107/S0108270199006538
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.skcxgu
title: Occurrence Download

description: A dataset containing 154424525 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidoptera"
 ]
}

 The dataset includes 154424525 records from 11313 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004599-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25810/v6y2-az07
title: FIRED ANTIGUA AND BARBUDA

description: This is event-level polygons for the fire event delineation (FIRED) product for ANTIGUA AND BARBUDA from November 2000  to January 2024. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v061/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (https://github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 1 pixels and 5 days. See the associated paper for more details on the methods and more:

Balch, J.K.; St. Denis, L.A.; Mahood, A.L.; Mietkiewicz, N.P.; Williams, T.M.; McGlinchy, J.; Cook, M.C. FIRED (Fire Events Delineation): An Open, Flexible Algorithm and Database of US Fire Events Derived from the MODIS Burned Area Product (2001–2019). Remote Sens. 2020, 12, 3498. https://doi.org/10.3390/rs12213498
DOI: 10.25934/pr00010722.0
title: Available datapackage for study 'Usage Tracking Test Data Set 2 - do not request'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.15468/dl.caxr92
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thysanoteuthis rhombus Troschel, 1857",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032026-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/h8vv-hg19
title: ToF-SIMS data analysis of Paenibacillus sp. 300A and Shewanella oneidensis MR-1 biofilms

description: Analysis of bacterial biofilms is particularly challenging and important with diverse applications from systems biology to biotechnology.  Among the variety of techniques that have been applied, time-of-flight secondary ion mass spectrometry (ToF-SIMS) has many promising features in studying the surface characteristics of biofilms. ToF-SIMS offers high spatial resolution and high mass accuracy, which permit surface sensitive analysis of biofilm components. Thus, ToF-SIMS provides a powerful solution to addressing the challenge of bacterial biofilm analysis. This dataset covers ToF-SIMS analysis of Paenibacillus sp. 300A isolated from the Hanford site in Richland, WA and Shewanella oneidensis MR-1 isolated from freshwater lake sediment in New York state. The strains are known to have metal and sulfur reducing properties and can be used for bioremediation, wastewater treatment, and bioengineering and technology development. There is a current need to identify small molecules and fragments produced from bacterial biofilms. Static ToF-SIMS spectra of MR-1 were obtained using an IONTOF TOF.SIMS V instrument equipped with a 25 keV Bi3+ metal ion gun. Identified molecules and molecular fragments are compared against known biological databases and the reported peaks have at least 65 ppm mass accuracy. These molecules range from lipids and fatty acids to flavonoids, quinolones, and other naturally occurring organic compounds. It is anticipated that the spectral identification of key peaks will assist detection of metabolites, extracellular polymeric substance molecules like polysaccharides, and biologically relevant small molecules using ToF-SIMS in future surface and interface research of bacterial biofilms.
DOI: 10.25934/pr00010723.0
title: Available datapackage for study 'Usage Tracking Test Data Set 3 - do not request'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5281/zenodo.13919219
title: Data and plotting scripts for "Influence of ocean model horizontal resolution on the representation of global annual-to-multidecadal coastal sea level variability"

description: This repository includes a jupyter notebook "FOSI-HR-LR-TG-analysis.ipynb" that creates the figures for the referenced paper, using the included derived observational and model datasets.
DOI: 10.15468/dl.ajgmpr
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Portunus pelagicus (Linnaeus, 1758)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 123 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032028-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25810/ahej-ks61
title: FIRED ANTIGUA AND BARBUDA

description: This is event-level polygons for the fire event delineation (FIRED) product for ANTIGUA AND BARBUDA from November 2000  to January 2024. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v061/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (https://github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 1 pixels and 5 days. See the associated paper for more details on the methods and more:

Balch, J.K.; St. Denis, L.A.; Mahood, A.L.; Mietkiewicz, N.P.; Williams, T.M.; McGlinchy, J.; Cook, M.C. FIRED (Fire Events Delineation): An Open, Flexible Algorithm and Database of US Fire Events Derived from the MODIS Burned Area Product (2001–2019). Remote Sens. 2020, 12, 3498. https://doi.org/10.3390/rs12213498
DOI: 10.5281/zenodo.12604958
title: VulNet Dataset and script generation
DOI: 10.5281/zenodo.12752240
title: Niffler Dataset and script generation
DOI: 10.5281/zenodo.12793239
title: Niffler Material for Experimental Reproducibility
DOI: 10.5281/zenodo.14418159
title: Niffler Material for Experimental Reproducibility Version 2
DOI: 10.15468/dl.qsn4s8
title: Occurrence Download

description: A dataset containing 60551 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Barbula unguiculata Hedw."
 ]
}

 The dataset includes 60551 records from 463 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032025-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88y74f
title: Occurrence Download

description: A dataset containing 470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trichiurus lepturus Linnaeus, 1758",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 470 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032029-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00010724.0
title: Available datapackage for study 'Usage Tracking Test Data Set 4 - do not request'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.15468/dl.j7zyn7
title: Occurrence Download

description: A dataset containing 1158675 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pottiaceae"
 ]
}

 The dataset includes 1158675 records from 1130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032002-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5z6vx
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.48762 35.22851,-2.18078 34.85315,-1.32612 35.32992,-2.09249 36.61192,-2.18538 36.85681,-5.20493 36.7177,-5.62201 35.99463,-5.48762 35.22851))",
 "TaxonKey is Ericaria selaginoides (Linnaeus) Molinari & Guiry, 2020"
 ]
}

 The dataset includes 67 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016772-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urvpns
title: Occurrence Download

description: A dataset containing 2452 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ternstroemia tepezapote Schltdl. & Cham."
 ]
}

 The dataset includes 2452 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016773-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yxpcz
title: Occurrence Download

description: A dataset containing 13918 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((6.3 50.3,7.7 50.3,7.7 51,6.3 51,6.3 50.3))",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 13918 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016774-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1126675
title: Data from Archaeological Mitigation and Post-Excavation Work at East Midlands Gateway Strategic Rail Freight Interchange and Kegworth Bypass Scheme 2013 to 2017

description: This collection comprises image, text, spreadsheet, database, GIS and CAD data from Archaeological Mitigation and Post-Excavation Work at the East Midlands Gateway Strategic Rail Freight Interchange and Kegworth Bypass Scheme. The work was undertaken by Wessex Archaeology. Project X-A168-2013 was undertaken between 2013 and 2017. Project X-A161-2014 was undertaken between 2014 and 2017.
DOI: 10.5281/zenodo.11441305
title: Phyloseq eDNA 18S meta-barcoding dataset for the eDNA paper on HPAI
title: Detection of airborne wild waterbird-derived DNA demonstrates potential transmission of avian influenza virus via air-inlets into poultry houses

description: Detection of airborne wild waterbird-derived DNA demonstrates potential transmission of avian influenza virus via air-inlets into poultry houses

Alex Bossers, Myrna M.T. de Rooij, Isabella van Schothorst, Francisca C. Velkers and Lidwien A.M. Smit

Background

Outbreaks of highly pathogenic avian influenza (HPAI) in poultry farms and wild birds worldwide are still increasing despite intensified control measures. HPAI is causing unprecedented mortality in bird populations, and is increasingly affecting mammalian species. Better understanding of HPAI introduction pathways into farms are needed for targeted disease prevention and control. The relevance of airborne transmission has been suggested but research involving air sampling is limited and unequivocal evidence on transmission routes is lacking.

Aim

To investigate whether HPAI-virus from wild birds can potentially enter poultry houses through air-inlets by characterizing host materials by eukaryote DNA sequencing.

Methods

Particulate matter (PM) samples were collected in, and around three HPAI affected poultry farms which were cleared and decontaminated prior to sampling. Indoor measurements (N=61) were taken directly in the air-flow entering through air-inlets, while outdoor air samples (N=60) were collected around the poultry house. Positive controls were obtained from a bird rehabilitation shelter. Metabarcoding was performed on environmental DNA by deep-sequencing 18S-rRNA gene amplicons.

Results

Waterbird DNA was detected in air inside all three, and outside of two poultry farms. Sequences annotated at species level included swans and tufted ducks. Waterbird DNA was present in all indoor and outdoor air samples from the bird shelter.

Conclusion

HPAI-virus can potentially be introduced in poultry houses through air-inlets via airborne contaminated wild bird-derived matter. The eDNA metabarcoding provided a comprehensive tool to assess biosecurity for HPAI-virus and other pathogens potentially transmitted through air via detection of their corresponding hosts.
DOI: 10.5281/zenodo.11441306
title: Phyloseq eDNA 18S meta-barcoding dataset for the eDNA paper on HPAI
title: Detection of airborne wild waterbird-derived DNA demonstrates potential transmission of avian influenza virus via air-inlets into poultry houses

description: Detection of airborne wild waterbird-derived DNA demonstrates potential transmission of avian influenza virus via air-inlets into poultry houses

Alex Bossers, Myrna M.T. de Rooij, Isabella van Schothorst, Francisca C. Velkers and Lidwien A.M. Smit

Background

Outbreaks of highly pathogenic avian influenza (HPAI) in poultry farms and wild birds worldwide are still increasing despite intensified control measures. HPAI is causing unprecedented mortality in bird populations, and is increasingly affecting mammalian species. Better understanding of HPAI introduction pathways into farms are needed for targeted disease prevention and control. The relevance of airborne transmission has been suggested but research involving air sampling is limited and unequivocal evidence on transmission routes is lacking.

Aim

To investigate whether HPAI-virus from wild birds can potentially enter poultry houses through air-inlets by characterizing host materials by eukaryote DNA sequencing.

Methods

Particulate matter (PM) samples were collected in, and around three HPAI affected poultry farms which were cleared and decontaminated prior to sampling. Indoor measurements (N=61) were taken directly in the air-flow entering through air-inlets, while outdoor air samples (N=60) were collected around the poultry house. Positive controls were obtained from a bird rehabilitation shelter. Metabarcoding was performed on environmental DNA by deep-sequencing 18S-rRNA gene amplicons.

Results

Waterbird DNA was detected in air inside all three, and outside of two poultry farms. Sequences annotated at species level included swans and tufted ducks. Waterbird DNA was present in all indoor and outdoor air samples from the bird shelter.

Conclusion

HPAI-virus can potentially be introduced in poultry houses through air-inlets via airborne contaminated wild bird-derived matter. The eDNA metabarcoding provided a comprehensive tool to assess biosecurity for HPAI-virus and other pathogens potentially transmitted through air via detection of their corresponding hosts.
DOI: 10.15468/dl.rq4kaj
title: Occurrence Download

description: A dataset listing the 449 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2018-2018"
 ]
}

 The dataset's 449 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016767-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pc6pvp
title: Occurrence Download

description: A dataset containing 170333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Netherlands",
 "Month is one of (December, January, November)",
 "TaxonKey is Ardea alba Linnaeus, 1758",
 "Year 2020-2025"
 ]
}

 The dataset includes 170333 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016753-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pzangx
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-5.55411 35.08426,-1.87368 35.01579,-1.24459 35.33675,-2.29308 36.86028,-5.02344 36.73617,-5.62686 36.03432,-5.55411 35.08426))",
 "HasGeospatialIssue is false",
 "TaxonKey is Sargassum muticum (Yendo) Fensholt"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016775-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.