cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24711825
title: Data for: Photoinduced charge separation and DNA self-repair depend on sequence directionality and stacking pattern

description: This directory contains the key computational data generated for the research generated for the research article entitled 'Photoinduced charge separation and DNA self-repair depend on sequence directionality and stacking pattern' by Kufner, C.L.*, Crucilla, S., Ding, D., Stadlbauer, P., Sponer, J., Szostak J.W., Sasselov D.D., Szabla, R.*. The article was resubmitted to the journal Chemical Science in December 2023, after revisions. The directories included here are listed below together with a brief description:- QMMM-pdb-files: final PDB files containing the minimum-energy geometries of the key points on excited-state and ground-state potential energy surfaces as discussed in the main article. The names of the files should be self-explanatory and correspond to the naming used in the main article. GS - ground state, S1 - first excited state, CI - conical intersection.- QMMM-results: directories containing raw data from the key QM/MM calculations.- clustering-based-on-MD: two sub-directories containing PDB files with the structures of clusters generated after processing of the molecular-dynamics (MD) trajectories, and .dat files containing information about cluster populations.- xyz-files: final xyz files containing only the structures of nucleobases or the whole tetranucleotide resulting from the QM/MM geometry optimizations. These structures are equivalent to the PDB files, albeit containing smaller fragments of the whole system (no MM part).<br>
DOI: 10.5281/zenodo.10232492
title: nuc_data_test
DOI: 10.5281/zenodo.10232493
title: nuc_data_test
DOI: 10.6084/m9.figshare.24637821
title: Supplementary Material for: Pulmonary MALT lymphoma treated with radiation therapy: A case report and review of the literature.

description: Mucosa associated lymphoid tissue lymphoma (MALT lymphoma or MALToma) is the most common type of primary pulmonary lymphoma, with the most common therapeutic approach being surgery or chemotherapy. There are few reports of radiation therapy being used. Here we report a case of pulmonary MALToma which had progressed following rituximab therapy and subsequently responded to radiation therapy. (structured abstract present in manuscript)
DOI: 10.6084/m9.figshare.24637821.v1
title: Supplementary Material for: Pulmonary MALT lymphoma treated with radiation therapy: A case report and review of the literature.

description: Mucosa associated lymphoid tissue lymphoma (MALT lymphoma or MALToma) is the most common type of primary pulmonary lymphoma, with the most common therapeutic approach being surgery or chemotherapy. There are few reports of radiation therapy being used. Here we report a case of pulmonary MALToma which had progressed following rituximab therapy and subsequently responded to radiation therapy. (structured abstract present in manuscript)
DOI: 10.6084/m9.figshare.24634874
title: Data from A model of time-varying music engagement

description: Containing the ratings given to individual excerpts for the two music conditions by the three participant groups
DOI: 10.6084/m9.figshare.24634877
title: Analysis script from A model of time-varying music engagement

description: R code of visualisation of Figure 1 and linear mixed models examining effects of Expertise group and Music style and interaction between them.
DOI: 10.6084/m9.figshare.24711948
title: data_binary.xlsx

description: It is the dataset of a beta-carotne meta-analysis study.
DOI: 10.6084/m9.figshare.24711948.v1
title: data_binary.xlsx

description: It is the dataset of a beta-carotne meta-analysis study.
DOI: 10.57745/ci2hl5
title: Rolland_average_dataset_2023.csv

description: see Rolland_metadata_description_2023.docx
DOI: 10.57745/z9b7kg
title: Rolland_metadata_description_2023.docx

description: description of metadata related to the two datasets
DOI: 10.57745/xqwpwp
title: Rolland_raw_dataset_2023.tab

description: see Rolland_metadata_description_2023.docx
DOI: 10.5281/zenodo.7565310
title: UKV Lee Waves 700 hPa vertical velocities and hand labels

description: Data to train models to segment trapped lee waves from vertical velocity NWP data. Full details in QJRMS paper https://doi.org/10.1002/QJ.4592. Met Office UKV data available under the Open Government Licence.
DOI: 10.5281/zenodo.10230764
title: UKV Lee Waves 700 hPa vertical velocities and hand labels

description: Data to train models to segment trapped lee waves from vertical velocity NWP data.


Full details in QJRMS paper https://doi.org/10.1002/QJ.4592.


Met Office UKV data available under the Open Government Licence.
DOI: 10.5281/zenodo.7565309
title: UKV Lee Waves 700 hPa vertical velocities and hand labels

description: Data to train models to segment trapped lee waves from vertical velocity NWP data.


Full details in QJRMS paper https://doi.org/10.1002/QJ.4592.


Met Office UKV data available under the Open Government Licence.
DOI: 10.6084/m9.figshare.24711690
title: Minimap2 method

description: Wherein we store the output files of the minimap2 processes for lifting over gene models to the new genome assembly of Nematostella Vectensis.
DOI: 10.6084/m9.figshare.24711690.v1
title: Minimap2 method

description: Wherein we store the output files of the minimap2 processes for lifting over gene models to the new genome assembly of Nematostella Vectensis.
DOI: 10.5281/zenodo.10246030
title: Dataset related to article "Safety and efficacy of an ultra low dose fluoroscopic protocol for chronic total occlusion recanalization "

description: This record contains raw data related to article "Safety and efficacy of an ultra low dose fluoroscopic protocol for chronic total occlusion recanalization"
Abstract
Background: Chronic total occlusion (CTO) revascularization is a major source of radiation for both patients and physicians. Therefore, efforts to minimize radiation during CTO percutaneous coronary intervention (PCI) are highly encouraged.
Aims: To evaluate the impact of an Ultra Low fluoroscopic Dose Protocol (ULDP), based on 3.75 frames per second for the fluoroscopy and 7.5 frames per second for the cine acquisition, during CTO PCI.
Methods: One hundred fifty consecutive patients who underwent CTO PCI were retrospectively enrolled. Eighty-five underwent standard dose protocol (SDP) and 65 ULDP. Radiation exposure and acute clinical outcomes were compared between groups. Results were stratified according to lesion complexity.
Results: Patients undergoing ULDP, as compared to those undergoing SDP, showed a significant reduction of kerma area product, both for simple lesions (6861.0 vs. 13236.0 mGy × cm2 ; p = 0.014) and complex lesions (CL) (8865.0 vs. 16618.0 mGy × cm2 ; p < 0.001). Similarly, Air Kerma (AK) was lower when ULDP was used (1222.5 vs. 2015.0 cGy in SL, p = 0.134; 1499.0 vs. 2794.0 cGy in CL, p < 0.001). No significant differences were reported regarding procedural success and in-hospital major adverse cardiovascular events between groups. Notably, there was not any crossover from ULDO to SDP due to poor quality images. Interestingly, fluoroscopy time, procedural time and contrast volume was significantly lower in patients undergoing ULDP only for CLs.
Conclusions: ULDP significantly reduces radiation exposure in the setting of high complexity procedures such as CTO PCI. This reduction seemed to be greater with increased procedural complexity and did not impact acute success or adverse clinical events.
DOI: 10.5281/zenodo.10246031
title: Dataset related to article "Safety and efficacy of an ultra low dose fluoroscopic protocol for chronic total occlusion recanalization "

description: This record contains raw data related to article "Safety and efficacy of an ultra low dose fluoroscopic protocol for chronic total occlusion recanalization"
Abstract
Background: Chronic total occlusion (CTO) revascularization is a major source of radiation for both patients and physicians. Therefore, efforts to minimize radiation during CTO percutaneous coronary intervention (PCI) are highly encouraged.
Aims: To evaluate the impact of an Ultra Low fluoroscopic Dose Protocol (ULDP), based on 3.75 frames per second for the fluoroscopy and 7.5 frames per second for the cine acquisition, during CTO PCI.
Methods: One hundred fifty consecutive patients who underwent CTO PCI were retrospectively enrolled. Eighty-five underwent standard dose protocol (SDP) and 65 ULDP. Radiation exposure and acute clinical outcomes were compared between groups. Results were stratified according to lesion complexity.
Results: Patients undergoing ULDP, as compared to those undergoing SDP, showed a significant reduction of kerma area product, both for simple lesions (6861.0 vs. 13236.0 mGy × cm2 ; p = 0.014) and complex lesions (CL) (8865.0 vs. 16618.0 mGy × cm2 ; p < 0.001). Similarly, Air Kerma (AK) was lower when ULDP was used (1222.5 vs. 2015.0 cGy in SL, p = 0.134; 1499.0 vs. 2794.0 cGy in CL, p < 0.001). No significant differences were reported regarding procedural success and in-hospital major adverse cardiovascular events between groups. Notably, there was not any crossover from ULDO to SDP due to poor quality images. Interestingly, fluoroscopy time, procedural time and contrast volume was significantly lower in patients undergoing ULDP only for CLs.
Conclusions: ULDP significantly reduces radiation exposure in the setting of high complexity procedures such as CTO PCI. This reduction seemed to be greater with increased procedural complexity and did not impact acute success or adverse clinical events.
DOI: 10.5281/zenodo.10014915
title: Data supporting "Modeling and evaluating the effects of irrigation on land-atmosphere interaction in southwestern Europe with the regional climate model REMO2020-iMOVE using a newly developed parameterization"

description: This data supports the analysis of the manuscript Asmus et al. 2023 "Modeling and evaluating the effects of irrigation on land-atmosphere interaction in southwestern Europe with the regional climate model REMO2020-iMOVE using a newly developed parameterization".
Simulation data
The simulation data is created with REMO2020-iMOVE using the new irrigation parameterization. The results are saved as NetCDF files with monthly mean values and/or time series (hourly) of single variables for the analysis period. A list of the simulations can be found below.
Observation data 
The observation data is published with the kind permission of ISPRA which hosts the SCIA database (www.scia.isprambiente.it). If you use this data, please make sure to include the following data source:SCIA by ISPRA - Area Climatologia operativa - Via V. Brancati 48 00144 Roma. We downloaded monthly mean values for the variables T2Max, T2Min and T2Mean from http://193.206.192.214/servertsutm/serietemporali100.php (last accessed on 14/10/2022) to verify the model results with and without irrigation parameterization. 
By untarring the tarballs, the data structure is created that is necessary to execute the analysis scripts.
For more information or additional data please contact the author.
 
tarball                       | exp_number | description 
067015.tar.gz            |  067015         | not irrigated
067016.tar.gz            | 067016          | irrigated with "adaptive water application scheme"
067017.tar.gz            | 067017          | irrigated with "adaptive water application scheme"
067019.tar.gz            | 067019          | irrigated with "flexible time water application scheme"
067020.tar.gz            | 067020          | irrigated with "prescribed water application scheme"
observation_scia.tar  | -                    | observation data from SCIA 
 
Data structure for simulation data
\<exp_number>   \monthly   \hourly      \var_series         \<variable>Note:\067015 includes static variables   \irrifrac (irrigated fraction)   \bla (land-sea-mask)
DOI: 10.6084/m9.figshare.24711933
title: 1: Synthetic population and Social networks

description: synthetic population
DOI: 10.5066/p96nldlx
title: 1-D Deep Ventilation (1DDV) model for Crater Lake, Oregon, 1950-2100

description: This data release contains the source code for the 1-D Deep Ventilation (1DDV) model (written in the Matlab programming language), and the input and output data from that model that were used to simulate temperature, salinity, and dissolved oxygen (DO) at specific depths in the lake. The input data consisted of: 1. daily average surface water temperature either a. collected by thermistors (Crawford_and_Collier_2007) between 1992 and 2013 and used for calibration/validation, or b. simulated by air2water from downscaled MACA outputs of air temperature (Abatzoglou_and_Brown_2012) for future simulations following the method in Piccolroaz_et_al_2013; 2. daily average wind speed either a. collected by the National Parks Service (NPS) between 1992 and 2013 and used for calibration/validation, or b. downscaled from MACA outputs of wind speed (Abatzoglou_and_Brown_2012) for future simulations; 3. initial profiles of water temperature, salinity, and DO (Crawford_and_Collier_2007, McManus_et_al_1992); 4. general lake information (including bathymetry, elevation, latitude); 5. Seepage rate for salinity based on approach in Redmond_1990; 6. diffusivity profiles for temperature and salinity based on approach in Wood_et_al_2016; 7. rates of volumetric consumption of oxygen by depth as described in Wood_crater_lake_deep_ventilation; 8. rates of primary production by depth and month following McIntire_et_al_2007; 9. rates of geothermal input (heat and salinity) by depth based on rates calculated in Wood_et_al_2016; and 10. monthly average rates of precipitation and evaporation determined by Collier_and_others_1990 and Redmond_2007. The calibrated 1DDV model for Crater Lake was used to simulate conditions in Crater Lake for 12 general circulation models (GCMs) which were each run over a historical period (1950-2005) and for 2 future climate scenarios (RCP4.5 and RCP8.5 over 2006-2100).
DOI: 10.5281/zenodo.10246075
title: Reproducing nonlinear ground response and pore pressure variations using in-situ soil properties

description: The zip file named 'Seismic and pore water pressure data.zip' contains all the seismic and pore water pressure data in our study.
The zip file named 'WLA model.zip' contains the numerical models used in our study.
DOI: 10.5517/ccdc.csd.cc2hlbbs
title: CCDC 2311525: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, John Arron Stride, Mohan Bhadbhade, Ruoming Tian|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hlbct
title: CCDC 2311526: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, John Arron Stride, Mohan Bhadbhade, Ruoming Tian|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28n9y6
title: CCDC 2104898: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, John Arron Stride, Mohan Bhadbhade, Ruoming Tian|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29w58n
title: CCDC 2141271: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, John Arron Stride, Mohan Bhadbhade, Ruoming Tian|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29w57m
title: CCDC 2141270: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, John Arron Stride, Mohan Bhadbhade, Ruoming Tian|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29w56l
title: CCDC 2141269: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, John Arron Stride, Mohan Bhadbhade, Ruoming Tian|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29w59p
title: CCDC 2141272: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, John Arron Stride, Mohan Bhadbhade, Ruoming Tian|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hlbfw
title: CCDC 2311528: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, John Arron Stride, Mohan Bhadbhade, Ruoming Tian|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29tmrj
title: CCDC 2139798: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, Ruoming Tian, Mohan Bhadbhade, John Arron Stride|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29w5bq
title: CCDC 2141273: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, Ruoming Tian, Mohan Bhadbhade, John Arron Stride|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hlbhy
title: CCDC 2311530: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, Ruoming Tian, Mohan Bhadbhade, John Arron Stride|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10246062
title: The sixth finger illusion in anorexia nervosa

description: Data collected from a sample of people suffering from anorexia nervosa and healthy controls. Task: sixth finger illusion classic and rotated (0°, 90°, 135°, 180°).
DOI: 10.5281/zenodo.10246063
title: The sixth finger illusion in anorexia nervosa

description: Data collected from a sample of people suffering from anorexia nervosa and healthy controls. Task: sixth finger illusion classic and rotated (0°, 90°, 135°, 180°).
DOI: 10.5517/ccdc.csd.cc2hlbjz
title: CCDC 2311531: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, Ruoming Tian, Mohan Bhadbhade, John Arron Stride|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10246103
title: Supplementary Materials for article entitled 'On Italian Spatial Prepositions and Measure Phrases: Reconciling Data with Theoretical Accounts', published in Linguistics
DOI: 10.5281/zenodo.10246104
title: Supplementary Materials for article entitled 'On Italian Spatial Prepositions and Measure Phrases: Reconciling Data with Theoretical Accounts', published in Linguistics
DOI: 10.5517/ccdc.csd.cc2hlbk0
title: CCDC 2311532: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, Ruoming Tian, Mohan Bhadbhade, John Arron Stride|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28n6lr
title: CCDC 2104794: Experimental Crystal Structure Determination

description: Related Article: Jason Holland, Ruoming Tian, Mohan Bhadbhade, John Arron Stride|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.