cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34725/dvn/fzg7ja/jf12tx
title: 0.Disclaimer.pdf
DOI: 10.34725/dvn/fzg7ja/qpbsig
title: 1-s2.0-S0167880918302433-main.pdf
DOI: 10.34725/dvn/lzu89m
title: Replication data for: Relationships between soil seed banks and above-ground vegetation along a disturbance gradient in the W National Park trans-boundary biosphere reserve, West Africa

description: Vegetation succession depends on the availability of suitable propagules in the soils, thus knowledge of soil seed banks is essential for formulating effective strategies for restoring the vegetation of degraded sites. The W National Park, the only trans-boundary biosphere reserve in West Africa, is being extensively fragmented and degraded in recent decades. The aims of this study were to assess the reserve’s soil seed banks, their relationships with standing vegetation and bundle of disturbances and their potential significance for vegetation restoration. The size and composition of the above-ground species vegetationwere assessed in nine plots of 1 ha each representing a range of habitats with differing disturbance severity (low, intermediate and high). A total of 702 soil samples were taken from three layers (0–3, 3–6 and 6–9cm) and soil seed bank was analyzed using the seedling emergence technique. Generally, seeds of non-woody taxa dominated in samples from all soil depths and habitats of all disturbance severities. The mean soil seed density was 17.8, 24.4 and 26.3 seeds/dm3 in samples from the least, intermediate and most disturbed sites, respectively, and highest in the upper soil layers in all cases. The results indicate that there is limited potential for restoring woody vegetation solely from soil seed banks and that woody species in the region rely more on recently shed seeds trapped in the standing dead biomass and litter on the ground than soil seed banks for regeneration. Thus, human intervention is needed to accelerate forest recovery, mainly through alleviating anthropogenic impacts on the ecosystem (for instance, avoiding destruction of new seeds by intense fire), and site manipulation to improve environmental conditions for seedling establishment and growth. Other ways of restoring forests than through the soil seed bank (e.g. sowing seeds collected elsewhere, and planting tree seedlings) could also be relevant.
DOI: 10.34725/dvn/lzu89m/bkrurm
title: Survey Result 1.tab
DOI: 10.34725/dvn/lzu89m/c7cyd8
title: Survey Result2.xlsx
DOI: 10.34725/dvn/lzu89m/c8xyil
title: Codebook.tab
DOI: 10.34725/dvn/ozmosz/7anso1
title: 0.Disclaimer.pdf
DOI: 10.34725/dvn/ozmosz/iuoudr
title: Code Book.tab
DOI: 10.6084/m9.figshare.11828454.v2
title: Simulated mean wave direction (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated mean wave direction (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.34725/dvn/ozmosz
title: Replication Data for: Drivers of farmers’ decisions to adopt agroforestry: Evidence from the Sudanian savanna zone, Burkina Faso

description: In most developing countries, there has been a long-standing conflict of interest between using land for agriculture and the conservation of biodiversity. This paper reports on a study of factors influencing farmers’ decisions to integrate trees into their agricultural practice. We also discuss the possibility of protecting and managing planted and naturally regenerating trees on farmland in order to restore degraded land and improve biodiversity. Data were collected from interviews with farmers in the Center-West region of Burkina Faso and analyzed using Principal Component Analysis, multiple linear regression and binary logistic regression. The results show that farmers’ decisions to incorporate trees into their farmland were mainly influenced by silvicultural knowledge and skills, participation in farmers’ groups or other social organizations with an interest in tree conservation, the social value of biodiversity in the rural landscape, and the perceived economic benefits of trees on farmland. The most important factors associated with variation in levels of motivation to conserve trees on farms included household wealth, gender, age, education level, marital status, residence status, farmland size, household size and technical support. We conclude that an agroforestry project will be more successful if the local biophysical conditions and diversity of smallholder socio-economic characteristics and their perceptions, needs and preferences are considered in its design. There is also an immediate need for coordinated development of information and training to raise local community awareness of the potential of agroforestry as well as to disseminate information about adding value to tree products in order to encourage farmers to protect on-farm trees.
DOI: 10.34725/dvn/ozmosz/fvzmwk
title: Survey Results.xlsx
DOI: 10.34725/dvn/mn9nrd/5wd0ww
title: Product.tab
DOI: 10.34725/dvn/mn9nrd/8tgumh
title: Forest.tab
DOI: 10.34725/dvn/mn9nrd/999kjo
title: Association.tab
DOI: 10.34725/dvn/mn9nrd/lchcqa
title: Settlement.tab
DOI: 10.3886/e113722v1-22223
title: Replication data for: Temperature and Decisions: Evidence from 207,000 Court Cases

description: We analyze the impact of outdoor temperature on high-stakes decisions (immigration adjudications) made by professional decision-makers (US immigration judges). In our preferred specification, which includes spatial, temporal, and judge fixed effects, and controls for various potential confounders, a 10°F degree increase in case-day temperature reduces decisions favorable to the applicant by 6.55 percent. This is despite judgements being made indoors, "protected" by climate control. Results are consistent with established links from temperature to mood and risk appetite and have important implications for evaluating the influence of climate on "cognitive output."
DOI: 10.34725/dvn/lg01i9
title: Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand

description: The authors established the taxonomic status of endophytic fungi associated with leaves of Pandanaceae collected from southern Thailand. Morphotypes were initially identified based on their characteristics in culture and species level identification was done based on both morphological characteristics and phylogenetic analyses of DNA sequence data. Twenty-two isolates from healthy leaves were categorised into eight morphotypes. Appropriate universal primers were used to amplify specific gene regions and phylogenetic analyses were performed to identify these endophytes and established relationship with extant fungi. The authors identified both ascomycete and basidiomycete species, including one new genus, seven new species and nine known species. Morphological descriptions, colour plates and phylogenies are given for each taxon.
DOI: 10.34725/dvn/lg01i9/8xuoyy
title: MC_article_23670.pdf
DOI: 10.34725/dvn/lg01i9/i5gd4p
title: 0.Disclaimer.pdf
DOI: 10.34725/dvn/m8bjhe/5mlbaa
title: EC_Pacchani_23.05.15_Historia.docx
DOI: 10.34725/dvn/m8bjhe/azhshe
title: MM_Andina_17.04.15_Historia.docx
DOI: 10.34725/dvn/m8bjhe/de1cf5
title: JA_Ccerabamba_Feb_Abr.15.docx
DOI: 10.34725/dvn/m8bjhe/hvbvcm
title: GL_JV_Ccerabamba_22.04.15_InventarioHistoria.docx
DOI: 10.34725/dvn/m8bjhe
title: Farmer communities’ history and agroforestry in the Peruvian Andes

description: This data set presents transcriptions from open-ended exploratory interviews with farmers in three communities of the Peruvian Andes on a range of topics related to the local context, including the communities’ history, land use change and climate change, gender roles and social organization, agroforestry practices and species. Data was collected in 2015 in Pacobamba District, Apurimac Department, Peru
DOI: 10.34725/dvn/m8bjhe/k2hvnl
title: ET_Ccerabamba_18.04.15_Inventario.docx
DOI: 10.34725/dvn/xvxpq2
title: Fruiting patterns of macrofungi in tropical and temperate land use types in Yunnan Province, China

description: Despite the important contribution of fungi to forest health, biomass turnover and carbon cycling, little is known about the factors that influence fungal phenology. Therefore, in order to further our understanding on how macrofungal fruiting patterns change along a gradient from temperate to tropical climate zones, we investigated the phenological patterns of macrofungal fruiting at five sites along a combined altitudinal and latitudinal gradient in SW China and NW Laos, ranging from temperate to tropical climates. Observations were conducted in the dominant land use types at these study sites: mixed forest (all sites), coniferous forest (temperate sites) and grassland (temperate sites). In total, 2866 specimens were collected, belonging to 791 morpho species, 162 genera, and 71 families. At the site level, the fruiting of ectomycorrhizal (EcMF) and saprotrophic fungi (SapF) occurred at the same time among all land use types. The fruiting season of fungi in the tropical sites began earlier and ended later compared to that of fungi in the temperate sites, which we attribute mainly to the higher temperature and more abundant rainfall of the tropical areas. EcMF taxa richness in temperate forests (both coniferous and mixed forest) showed a distinct peak at the end of the rainy season in August and September, while no significant peak was observed for SapF taxa richness. Neither functional fungal groups showed significant seasonal fluctuations in tropical areas. The temporal turnover of fungal fruiting significantly increased with the shift from tropical to temperate forests along the elevation gradient. In the grasslands, macrofungal abundance was less than 22% of that of corresponding forest sites, and taxa richness was 42% of that of corresponding forest sites. Fungal fruiting showed no significant fluctuations across the rainy season. This work represents a case study carried out over one year, and further measurements will be needed to test if these results hold true in the longer term.
DOI: 10.34725/dvn/xvxpq2/q4imgh
title: 1-s2.0-S1146609X17303077-main.pdf
DOI: 10.3886/e117543v1
title: The Foveal Avascular Zone Image Database (FAZID)

description: The Foveal Avascular Zone (FAZ) is of clinical importance since the vascular arrangement around the fovea changes with disease and refractive state of the eye. In order to test and validate newly developed automated segmentation algorithms, we have created a public dataset of these retinal fundus images consisting of a total of 304 different images classified into: Diabetic (107), Myopic (109) and Normal (88) eyes. The images are of dimensions 420 x 420 pixels corresponding to 6mm x 6mm dimension of the retina. For each type of image, clear and manually segmented by a clinical expert (ground truth) are available.
DOI: 10.34725/dvn/xvxpq2/tusjdy
title: 0.Disclaimer.pdf
DOI: 10.25919/5e410219e80a1
title: CCS - MV Seca 2019 V02 RUV

description: Project Overview: A range of solutions will be required to reach globally agreed emissions reductions targets for carbon dioxide (CO2). Carbon capture and storage (CCS) is part of the suite of technologies that will contribute to lowering atmospheric emissions of CO2 from Australia's energy system. There are a wide variety of technologies at various stages of technical and commercial readiness, with more development underway for cost effective CO2 capture and storage. Our research will provide new knowledge to inform cost-efficient measurement, monitoring and verification (MMV) of the environment of CCS projects in coastal waters. --o-- Two remote stereo underwater video RUV units were built and supplied by SeaGIS Pty. Ltd. (www.seagis.com.au). The RUV systems consisted of a pair of GoPro Hero 5 cameras mounted inside waterproof housings that were fitted to a stainless steel frame. The frames were supplied with breakaway legs, so that the units could be reliably retrieved in the event of fouling on the seabed. Breakaway legs also enabled ballast to be readily adjusted to suit the prevailing conditions. To aid in the deployment and recovery of the RUV units, each unit was attached to a surface buoy with 8 mm rope. NOTE: RAW image and video files only
DOI: 10.5281/zenodo.3660799
title: Rigorose Fehlerschranken für das Elektronenstrukturproblem

description: The provided dataset contains rigorous error bounds for many linear conic programming problems, provided by the benchmark libraries DIMACS, ESC, RDM, SDPLIB, and SPARSE_SDP from the well-known website by Hans D. Mittelmann http://plato.asu.edu/sub/testcases.html. Those rigorous error bounds were computed by VSDP 2018, a MATLAB/GNU Octave software package for the computation of verified results in conic programming. This computation is done by careful post-processing of approximate solutions given by the conic solver programs CSDP, SDPA, SDPT3, SeDuMi, and MOSEK. The data is published in the PhD thesis "Rigorose Fehlerschranken für das Elektronenstrukturproblem" by Kai T. Ohlhus (2019 in German). Detailed information are given in the README.md file.
DOI: 10.5519/qd.ppspt6le
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (786711 records)
DOI: 10.5281/zenodo.3660843
title: Data Thesis XavierRaick

description: Fish-NoFish
DOI: 10.5281/zenodo.3660844
title: Data Thesis XavierRaick

description: Fish-NoFish
DOI: 10.5284/1059012
title: The former Radmore and Tucker site, Frog Street, Exeter: Archaeological Investigation

description: A programme of archaeological investigation was undertaken by Cotswold Archaeology in November 2018, at the request of Create Construction, at the former Radmore and Tucker site, Frog Street, Exeter. An area of 90 square metres was excavated within the proposed development area. The excavation followed a programme of evaluation, which had identified structural features and the remains of furnaces across the site. Excavation Area A targeted the area surrounding the furnaces, and exposed one medieval wall and a number of medieval deposits. The medieval features may relate to a series of tenements suggested by historical cartographic and documentary sources. The remains of five post-medieval walls had been disturbed or truncated by later robbing and industrial activity. Stratigraphic relationships suggested a number of sub-phases of construction and modification during this period, and two distinct phases of industrial activity of post-medieval date were identified. The first was represented by the remains of a single furnace, which was sealed by later post-medieval demolition deposits and made ground. A later post-medieval phase, dating possibly as late as the early nineteenth century, comprised the remains of two brick-built furnaces and an ancillary building and surfaces, all of which were sealed by modern overburden. The specific industrial activity undertaken on the site could not be confirmed by archaeological evidence, although documentary and cartographic research has emphasised the significance of cloth-working and dyeing in this part of Exeter during the post-medieval period. A number of eighteenth and nineteenth-century occupants of Frog Street properties have been identified, and their involvement with dyeing and cloth-working activities confirmed.
DOI: 10.5281/zenodo.3562045
title: Supplementary Appendix 3.1. List of 759 naturalised plant taxa In South Africa

description: Excel spreadsheet with 759 naturalized plant species in South Africa
DOI: 10.5281/zenodo.3562046
title: Supplementary Appendix 3.1. List of 759 naturalised plant taxa In South Africa

description: Excel spreadsheet with 759 naturalized plant species in South Africa
DOI: 10.6084/m9.figshare.11828454.v3
title: Simulated mean wave direction (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated mean wave direction (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.17632/94ppkj6yxz.1
title: Data for: 4D visualization of ground surface from an excavator by a solid-state 2D profilometer

description: Data (trench) include XYZ- coordinate (column 1-3) and intensity information (column 4)
DOI: 10.17632/fssx6j6v7y.1
title: Data for: 4D visualization of ground surface from an excavator by a solid-state 2D profilometer

description: Data (rectangular box) include XYZ- coordinate (column 1-3) and intensity information (column 4)
DOI: 10.5519/qd.h9ox946q
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1162 records)
DOI: 10.5281/zenodo.3660891
title: dictionaria/tseltal: Tseltal-Spanish multidialectal dictionary

description: Polian, Gilles. 2020. Tseltal-Spanish multidialectal dictionary. Dictionaria 10. 1-8109 (Available online at https://dictionaria.clld.org/contributions/tseltal)
DOI: 10.21227/ycny-yt71
title: Pozyx CIR and range with LOS and NLOS

description: This dataset includes UWB range measurements performed with Pozyx devices. The measurements were collected between two tags placed at several distances and in two different conditions: with Line of Sight (LOS) and Non-Line of Sight (NLOS). The measurements include the range estimated by the Pozyx tag, the actual distance between devices, the timestamp of each measurement and the values corresponding to the samples of the Channel Impulse Response (CIR) after each transmission.
DOI: 10.6084/m9.figshare.11828454.v5
title: Simulated mean wave direction (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated mean wave direction (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.5281/zenodo.3660976
title: Simulations of a DMPC membrane with embedded cholesterol or rhodopsin

description: Contain either 1 rhodopsin protein or 2 cholesterol molecules (1 per leaflet). 500 ns. Simulation at either 310 K (when explicitly mentioned) or 298 K (when not explicitly mentioned). The simulations at 298 K are in the ripple/gel phase.
DOI: 10.6084/m9.figshare.11828454.v7
title: Simulated mean wave direction (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment r1i1p1f1

description: Simulated mean wave direction (3-hourly, 150a) from FIO-ESM v2.0 1pctCO2 experiment (CO2 prescribed to increase at 1% per year) r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.21227/12tc-xx52
title: Pozyx CIR and range with LOS and NLOS

description: This dataset includes UWB range measurements performed with Pozyx devices. The measurements were collected between two tags placed at several distances and in two different conditions: with Line of Sight (LOS) and Non-Line of Sight (NLOS). The measurements include the range estimated by the Pozyx tag, the actual distance between devices, the timestamp of each measurement and the values corresponding to the samples of the Channel Impulse Response (CIR) after each transmission.
DOI: 10.5281/zenodo.3661028
title: APSiC: Analysis of Perturbation Screens for the Identification of Novel Cancer Genes

description: Systematic perturbation screens provide comprehensive resources for the elucidation of cancer driver genes. The perturbation of many genes in relatively few cell lines in such functional screens necessitates the development of specialized computational tools with sufficient statistical power. Here we developed APSiC (<em>A</em>nalysis of <em>P</em>erturbation <em>S</em>creens for <em>i</em>dentifying novel <em>C</em>ancer genes) to identify genetic and non-genetic drivers in perturbation screens even with few samples. Applying APSiC to the shRNA screen Project DRIVE, APSiC identified well-known, pan-cancer genetic drivers, novel putative genetic drivers known to be dysregulated in specific cancer types and the context dependency of mRNA-splicing between cancer types. Additionally, APSiC discovered a median of 28 and 35 putative non-genetic oncogenes and tumor suppressor genes, respectively, for individual cancer types, including genes involved in genome stability maintenance and cell cycle. We functionally demonstrated that <em>LRRC4B, </em>a putative novel non-genetic tumor suppressor gene, suppresses proliferation by delaying cell cycle and modulates apoptosis in breast cancer. We demonstrate APSiC is a robust statistical framework for discovery of novel cancer genes through analysis of large-scale perturbation screens. The analysis of DRIVE using APSiC is provided as a web portal and represents a valuable resource for the discovery of novel cancer genes.
DOI: 10.5281/zenodo.3661029
title: APSiC: Analysis of Perturbation Screens for the Identification of Novel Cancer Genes

description: Systematic perturbation screens provide comprehensive resources for the elucidation of cancer driver genes. The perturbation of many genes in relatively few cell lines in such functional screens necessitates the development of specialized computational tools with sufficient statistical power. Here we developed APSiC (<em>A</em>nalysis of <em>P</em>erturbation <em>S</em>creens for <em>i</em>dentifying novel <em>C</em>ancer genes) to identify genetic and non-genetic drivers in perturbation screens even with few samples. Applying APSiC to the shRNA screen Project DRIVE, APSiC identified well-known, pan-cancer genetic drivers, novel putative genetic drivers known to be dysregulated in specific cancer types and the context dependency of mRNA-splicing between cancer types. Additionally, APSiC discovered a median of 28 and 35 putative non-genetic oncogenes and tumor suppressor genes, respectively, for individual cancer types, including genes involved in genome stability maintenance and cell cycle. We functionally demonstrated that <em>LRRC4B, </em>a putative novel non-genetic tumor suppressor gene, suppresses proliferation by delaying cell cycle and modulates apoptosis in breast cancer. We demonstrate APSiC is a robust statistical framework for discovery of novel cancer genes through analysis of large-scale perturbation screens. The analysis of DRIVE using APSiC is provided as a web portal and represents a valuable resource for the discovery of novel cancer genes.
DOI: 10.5281/zenodo.3660831
title: Collected data from the ATLASM5 Atmospheric Research Station from 01 January 2019 to 31 December 2019

description: PI_NAME = Abdelwahid MELLOUKI<br> INSTITUTE = CNRS-ICARE<br> EMAIL=mellouki@cnrs-orleans.fr<br> ADDRESS=1C Av. de la Recherche Scientifique, CS 50060, 45071 Orleans cedex 2 TITLE = Data from the ATLASM5 Research Station Year = 2019<br> DATA_CATEGORY=Field_ATLASM5 Station<br> Project=MARSU<br> TYPE_OF_DATA= FIELD MEASUREMENT<br> STATUS_OF_FILE=FINAL<br> VERSION=1.0<br> PLATFORM = ATLASM5<br> NAME_OF_PLATFORM=MARSU<br> DESCRIPTION=https://marsu-h2020.org/
description: The HDF5 Binary File Format, (Hierarchical Data Format free and open standard) was selected to manage the files. Information regarding the format and organization of the HDF5 file are available at : https://www.hdfgroup.org/HDF5/ Information regarding the ATLASm5 Atmospheric Research Station can be found: https://marsu-h2020.org/