cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.b4a5yb
title: Occurrence Download

description: A dataset containing 2874 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Halothamnus Jaub. & Spach"
 ]
}

 The dataset includes 2874 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001983-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wusse3
title: Occurrence Download

description: A dataset containing 7604 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Haloxylon Bunge"
 ]
}

 The dataset includes 7604 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001984-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28861709
title: Data Sharing in Avon & Somerset Dec 2024.xlsx

description: This is the underlying dataset for an interactive data map. The interactive data map is a visualisation of data sharing that focuses on Avon and Somerset Constabulary and a range of different organisations and institutions that share and receive data with them. The data map relies predominantly on publicly available information such as privacy policies and reports, to show and record data-sharing relationships. A data-sharing relationship means that some documentation has been found that confirms that that an organisation is sharing or receiving data from another organisation.The interactive map is viewable here: https://kumu.io/elle-RHUL/data-sharing-in-avon-and-somerset.This dataset was created in 2024 under a studentship which was funded by the EPSRC Centre for Doctoral Training in Cyber Security for the Everyday at Royal Holloway, University of London. The copyright for the map and dataset belongs to Royal Holloway and Bedford New College. The map and dataset can be used under the creative commons CC BY-NC licence.
DOI: 10.17863/cam.117404
title: Research data supporting "Coercive field control in epitaxial ferroelectric Hf0.5Zr0.5O2 thin films by nanostructure engineering"

description: Structural analysis using x-ray diffraction, tunneling electron microscopy to identify the ferroelectric phase responsible for polarization, x-ray photoelectron spectroscopy to analyse potential relative stoichiometric change between two samples grown at different growth condition, electrical characterization using ferroelectricity tester (Aixacct TF2000 analyzer) for P-E loops and I-E loops, piezo-response force microscopy for phase and amplitude contrast for both out-of-plane and in-plane polarization vectors and theoretical calculations using DFT calculations for energy barrier for ferroelectric switching in two different orientation presented in this work.
DOI: 10.5281/zenodo.15200256
title: An Exploration of the use of Hybrid Fingerprints in Generalized Read-Across and their Impact on Predictive Performance for selected in vivo toxicity outcomes

description: Initial datasets as SI for manuscript
DOI: 10.5281/zenodo.15283673
title: An Exploration of the use of Hybrid Fingerprints in Generalized Read-Across and their Impact on Predictive Performance for selected in vivo toxicity outcomes

description: Initial datasets as SI for manuscript
DOI: 10.15468/dl.as22tt
title: Occurrence Download

description: A dataset containing 5897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-123.151 34.43,-119.35 34.43,-119.35 38.432,-123.151 38.432,-123.151 34.43))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Psaltriparus minimus (J.K.Townsend, 1837), Psaltriparus minimus melanurus Grinnell & Swarth, 1926, Psaltriparus minimus personatus Bonaparte, 1850, Psaltriparus minimus melanotis (Hartlaub, 1844), Psaltriparus minimus californicus Ridgway, 1884, Psaltriparus minimus dimorphicus Van Rossem & Hachisuka, 1938, Psaltriparus minimus plumbeus (S.F.Baird, 1854), Psaltriparus minimus cecaumenorum Thayer & Bangs, 1906, Psaltriparus minimus minimus, Psaltriparus minimus grindae Ridgway, 1883)",
 "Year 1000-2024"
 ]
}

 The dataset includes 5897 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001986-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qaxdc8
title: Occurrence Download

description: A dataset containing 416 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polemonium confertum A.Gray"
 ]
}

 The dataset includes 416 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001987-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z54cws
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hammada Iljin"
 ]
}

 The dataset includes 66 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001988-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15277204
title: Seznam nalezených druhů na pozemcích České zahradnické akademie Mělník a Školního statku Mělník

description: Seznam nalezených druhů na pozemcích České zahradnické akademie Mělník a Školního statku Mělník, pro Bakalářskou práci Diverzita plevelové vegetace na pozemcích ČZA (Agronomická fakulta MENDELU).

K nalezeným druhům jsou přiřazeny strategie rozšiřování, životní strategie dle Grime (1977) a jejich původnost v České Republice.
DOI: 10.5281/zenodo.15277205
title: Seznam nalezených druhů na pozemcích České zahradnické akademie Mělník a Školního statku Mělník

description: Seznam nalezených druhů na pozemcích České zahradnické akademie Mělník a Školního statku Mělník, pro Bakalářskou práci Diverzita plevelové vegetace na pozemcích ČZA (Agronomická fakulta MENDELU).

K nalezeným druhům jsou přiřazeny strategie rozšiřování, životní strategie dle Grime (1977) a jejich původnost v České Republice.
DOI: 10.15468/dl.mmhu53
title: Occurrence Download

description: A dataset containing 969 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Harpochloa Kunth"
 ]
}

 The dataset includes 969 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001991-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8en83u
title: Occurrence Download

description: A dataset containing 1573 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Polemonium viscosum Nutt."
 ]
}

 The dataset includes 1573 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001993-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28871030
title: Data associated with "Piercing the veil: A novel amoebozoan (<i>Janelia veilia</i> n. gen. n. sp.) reveals deep clades within Discosea through phylogenomics". This includes RNAseq assemblies from new taxa sequenced, phylogenetic datasets (alignments - Trimmed and Untrimmed) for the SSU rRNA gene tree, Phylogenomic datasets (alignments - Trimmed and Untrimmed) from the PhyloFisher dataset, all phylogenetic and phylogenomic trees, and supplemental videos of taxa.

description: This is the data associated with the manuscript "Piercing the veil: A novel amoebozoan (<i>Janelia veilia</i> n. gen. n. sp.) reveals deep clades within Discosea through phylogenomics" by Jones et al.<b>ABSTRACT</b>Three major groups of primarily amoeboid taxa are present across Amoebozoa: Discosea, Evosea, and Tubulinea. While each of these groups were thought to have morphologically unique traits and members, the morphologic boundaries between each group have recently blurred. For example, it is demonstrated that several taxa in each group display monopodial limax amoebae, a characteristic most often associated with Tubulinea. Here we describe a novel discosean amoeba isolated from a freshwater pond, <i>Janelia veilia</i> n. gen. n. sp. Its cells have variable morphologies, but often display monopodial limax amoebae, with a unique trailing structure that appears to be derived from cellular material. In some cases, cells have conical pseudopodia or pointed pseudopodia. Using phylogenomics, we find that this taxon branches as sister to the recently described discosean <i>Mycamoeba</i> <i>gemmipara</i> and the sporocarpic protosteloid amoeba <i>Microglomus</i> <i>paxillus</i>, forming an order-level group we term Mycamoebida. Mycamoebida is fully supported as sister to Dermamoebida, together forming a subclass we term Dermelia. SSU rRNA phylogenies show that <i>Janelia veilia</i> n. gen. n. sp. is molecularly unique from any known organism, but branches with high support in a clade containing <i>Mycamoeba</i> <i>gemmipara</i> and several environmental sequences suggesting a larger diverse clade within Discosea.<br>
DOI: 10.15468/dl.nvak3b
title: Occurrence Download

description: A dataset containing 4941 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Living Specimen, Human Observation, Observation)",
 "Continent is South America",
 "Country is one of (Chile, Argentina)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nothofagus Blume"
 ]
}

 The dataset includes 4941 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001995-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15025528
title: MetaCoOc pre-formatted input files

description: Pre-formatted files for use in MetaCoOc.

Key components of MetaCoOc are:



Community profiles (presence/absence or abundance) derived from Metagenomes (e.g. those generated by singleM and hosted in Sandpiper)

Metadata about the metagenome samples e.g. the metadata submitted in NCBI SRA metagenome submissions


Parsing NCBI SRA Metadata

We adapted the parsing workflow was adapted from public_sequencing_metadata_corrections. The process is detailed in the README.md of metacooc

Formatting Sandpiper Data

We downloaded the community profiles in Sandpiper from Zenodo

The community profiles were formatted into Ingredients classes using MetaCoOc. The pickles of these are saved here.
DOI: 10.5281/zenodo.15283587
title: MetaCoOc pre-formatted input files

description: Pre-formatted files for use in MetaCoOc.

Key components of MetaCoOc are:



Community profiles (presence/absence or abundance) derived from Metagenomes (e.g. those generated by singleM and hosted in Sandpiper)

Metadata about the metagenome samples e.g. the metadata submitted in NCBI SRA metagenome submissions


Parsing NCBI SRA Metadata

We adapted the parsing workflow was adapted from public_sequencing_metadata_corrections. The process is detailed in the README.md of metacooc

Formatting Sandpiper Data

We downloaded the community profiles in Sandpiper from Zenodo

The community profiles were formatted into Ingredients classes using MetaCoOc. The pickles of these are saved here.

 



Changelog

version 1.0.0



In-line with the update and release of Sandpiper1.0.0 - files in this repository were updated and versioning introduced
DOI: 10.15468/dl.rduqjn
title: Occurrence Download

description: A dataset containing 2343 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leuconotopicus borealis (Vieillot, 1809)",
 "Year 1970-2000"
 ]
}

 The dataset includes 2343 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001997-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tc44bm
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Peces de la Ecoreserva Predio Isla IV (Cantagallo, Bolívar) - Proyecto FIBRAS"
 ]
}

 The dataset includes 73 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002000-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kp2xjb
title: Occurrence Download

description: A dataset containing 3473 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus tenuis (Duméril & Bibron, 1837)"
 ]
}

 The dataset includes 3473 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002002-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aj3ue3
title: Occurrence Download

description: A dataset containing 905 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andrena evoluta Linsley & MacSwain, 1961"
 ]
}

 The dataset includes 905 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002001-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xad3qj
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-56.3361 -14.14482,-53.85858 -15.02571,-52.21438 -3.11267,-51.48088 -2.47086,-55.6491 -3.20354,-58.81362 -8.19878,-58.90756 -15.24596,-56.3361 -14.14482))",
 "OccurrenceStatus is Present",
 "TaxonKey is Sylvilagus Gray, 1867"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002003-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akqy8k
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Prognathodes obliquus (Lubbock & Edwards, 1980)"
 ]
}

 The dataset includes 12 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002004-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rv6ace
title: Occurrence Download

description: A dataset containing 61424 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hedysarum L."
 ]
}

 The dataset includes 61424 records from 612 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001994-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/emihlk
title: Replication Data for: (2014) The Ideological and Electoral Determinants of Legislation Targeting Undocumented Migrants in the U.S. States, State Politics and Policy Quarterly, 14(1): 90-117

description: The data and code necessary to replicate the analysis are in the zipped file.
DOI: 10.7910/dvn/lqc0k5
title: Jornal dos Sports 809

description: Newspaper
DOI: 10.7910/dvn/yahrdj
title: Replication Data for: Revealing mechanisms of infectious disease transmission through empirical contact networks

description: &lt;p&gt;Edgelist and infection time series files for the two empirical datasets used in the study. The first dataset comprises of dynamic networks of bee colonies (5-7 individuals), where edges represent direct physical contacts that were recorded using a color-based video tracking software. Progression of infection by &lt;i&gt;Crithidia bombi&lt;/i&gt; through the colonies was tracked by daily screening of individual feces, and the infection timing was determined using the knowledge of the rate of replication of &lt;i&gt;C. bombi&lt;/i&gt; within its host intestine. &lt;/p&gt;

&lt;p&gt;In addition to citing this dataset and the article, please also cite the original publication that describes the data: Otterstatter, Michael C., and James D. Thomson. "Contact networks and transmission of an intestinal pathogen in bumble bee (Bombus impatiens) colonies." Oecologia 154.2 (2007): 411-421.&lt;/p&gt;

&lt;p&gt;The second dataset monitors the spread of the commensal bacterium &lt;i&gt;Salmonella enterica&lt;/i&gt; in two separate wild populations of the Australian sleepy lizard &lt;i&gt;Tiliqua rugosa&lt;/i&gt;. The two sites consisted of 43 and 44 individuals respectively, and these represented the vast majority of all resident individuals at the two sites (i.e., no other individuals were encountered during the study period). Individuals were fitted with GPS loggers and their locations were recorded every 10 minutes for 70 days. Salmonella infections were monitored using cloacal swabs on each animal once every 14 days. Consequently, the disease data in this system do not identify the onset of each individual's infection. &lt;/p&gt;

&lt;b&gt;Column headers of the edgelist file &lt;/b&gt;:&lt;br /&gt;
&lt;p&gt;Note that the edges in edgelist are undirected (i.e., there is no direction associated with the edges)&lt;/p&gt;

&lt;ul&gt;
&lt;li&gt; node1: Id of the first individual involved in the interaction
&lt;li&gt; node2: Id of the second individual involved in the interaction
&lt;li&gt; timestep: The time step of the interation (measured in days)
&lt;li&gt; weight_freq: The frequency of interactions between the individuals at that time step
&lt;li&gt; weight_dur: The duration of interactions between the individuals at that time step (measured in seconds)
&lt;/ul&gt;

&lt;b&gt;Column headers of the infection data files&lt;/b&gt; :&lt;br /&gt;
&lt;ul&gt;
&lt;li&gt; Node: Id of the individual
&lt;li&gt; timestep: Time step of the infection diagnosis (measured in days)
&lt;li&gt; diagnosis: infection diagnosis. 0 indicates that the individual was diagnosed to be uninfected and 1 indicates that the individual was diagnosed to be infected. Note that for some datasets, infection diagnoses at all time steps were not available.
&lt;/ul&gt;
DOI: 10.7910/dvn/zpmpe9
title: O voto populista na França e na Alemanha contemporâneas: o perfil demográfico do eleitor importa?

description: Scripts, data and plots from the working paper titled "O voto populista na França e na Alemanha contemporâneas: o perfil demográfico do eleitor importa?".
DOI: 10.7910/dvn/jvba7f
title: COVID-19 spillover

description: Vaccine attitude data collected from August of 2018 and April of 2023
DOI: 10.7910/dvn/t90wig
title: Replication Data for: A case of β-thalassemia major on the East African Coast

description: &lt;p&gt;This is a replication data package for the manuscript titled: "&lt;a href=""&gt;A case of β-thalassemia major on the East African Coast&lt;/a&gt;."&lt;/p&gt;
description: <strong>Data Access: </strong>Restricted

Access to these data requires submission of a formal request for consideration by our Data Governance Committee. 
<strong>How to request</strong>

Download and complete the <strong>data request form</strong>
 Email completed data request form to the Data Governance Committee at <strong>dgc@kemri-wellcome.org</strong> 


<strong>License: </strong>Creative Commons Attribution 4.0 International
DOI: 10.7910/dvn/y09nyd
title: Replication Data for: Widespread Impact-Generated Porosity in Early Planetary Crusts

description: This repository includes: new basalt equation of state, all iSALE input files, and compressed jpeg outputs for all runs featured in "Widespread Impact-Generated Porosity in Early Planetary Crusts" to be published in Nature Communications. Many output .dat files had to be split for upload and can be recombined. The different runs are labeled in the title of the file.
DOI: 10.7910/dvn/zpwjjh
title: Refugees, Economic Capacity, and Host State Repression

description: Does hosting refugees affect state repression? While there have been numerous studies that examine the link between refugees and the spread of civil and international conflict, an examination of the systematic links between refugees and repression is lacking. We contend that researchers are missing a crucial link, as the dissent-repression nexus is crucial to understanding the development of armed conflict. Drawing upon logics of the relationship between refugees and the spread of conflict as well as economic capacity, we argue that increased numbers of refugees lead to increased repression. We contend that willingness to increase repression when hosting refugees is in part conditional on a host state’s economic capacity. We argue that, on the whole, the greater the population of refugees in a host state, repression becomes more likely. That said, we argue that increased economic capacity will moderate this relationship. We find empirical support for both predictions.
DOI: 10.7910/dvn/67crrw
title: Gα/GSA-1 works upstream of PKA/KIN-1 to regulate calcium signaling and contractility in the Caenorhabditis elegans spermatheca

description: Time-lapse movies of animals expressing GCaMP3 in the C. elegans spermatheca.
DOI: 10.7910/dvn/l0z9ak
title: Replication Data for: A manifold neural population code for space in hippocampal coactivity dynamics independent of place fields

description: Calcium imaging and behavior data for the manuscript: A manifold neural population code for space in hippocampal coactivity dynamics independent of place fields
DOI: 10.7910/dvn/yiwnbl
title: نحو مستقبل مستدام

description: هذا الكتاب هو رحلة إلى قلب الهندسة المعمارية الخضراء، و غوص في فلسفة و علم و فن إنشاء مساحات تحترم الكوكب و تحافظ عليه للأجيال القادمة.
بدءً من وضع الأساس و التعمق في تعريف و أهمية و تطور العمارة الخضراء، و عبر وجهات النظر التاريخية و الأطر النظرية و المبادرات العالمية التي شكلت هذا المجال الحيوي، إلى استكشاف الجانب العملي، و كفاءة الطاقة، و الحفاظ على المياه، و اختيار المواد المستدامة، في تأملات عميقة حول كيفية العيش في وئام مع بيئتنا، و تقليل بصمتنا مع زيادة جودة حياتنا إلى الحد الأقصى، من خلال دمج الطبيعة في مساحات المعيشة و تعزيز جودة البيئة الداخلية. 
هذا الكتاب ليس عن الهندسة المعمارية الخضراء، بقدر ما أنه دعوة إلى المسؤولية، و دليل للعيش في وئام مع الطبيعة، و مخطط لمستقبل مستدام، أنه رحلة تلهم أفعالك، و تساعدك على المساهمة في الحفاظ على وطننا المشترك و تعزيزه.
DOI: 10.7910/dvn/zso2fe
title: A14_26484.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/dd489d3c-1bb8-4964-ad82-b47f4e6a78f1'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/dd489d3c-1bb8-4964-ad82-b47f4e6a78f1
DOI: 10.7910/dvn/9qkju2
title: A Family of Finite-Temperature Electronic Phase Transitions in Graphene Multilayers

description: All data set used in the paper titled "A Family of Finite-Temperature Electronic Phase Transitions in Graphene Multilayers"