cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28675076.v1
title: RNA-sequencing dataset for <i>Pseudomonas fluorescens</i> PF08 wild-type strain and Δ<i>DR690</i>

description: This dataset contains the results of an RNA sequencing analysis conducted to investigate the regulatory role of the protein D7M10_RS27690 in biofilm formation in <i>Pseudomonas fluorescens</i> PF08. The study focuses on comparing the transcriptomic profiles of the wild-type strain PF08 and its mutant Δ<i>DR690</i>, which exhibits increased c-di-GMP levels and enhanced biofilm formation due to the deletion of D7M10_RS27690. Specifically, total RNA of <i>P. fluorescens</i> PF08 WT and Δ<i>DR690</i> was extracted using Trizol, 2 μg RNA was utilized for the stranded RNA sequencing library preparation using Ribo-off rRNA Depletion Kit (Catalog NO. MRZG12324, Illumina) and KCTM Stranded mRNA Library Prep Kit for Illumina® (Catalog NO. DR08402, Wuhan Seqhealth Co., Ltd. China) following the manufacturer’s instruction. Library products within 200-500 base pairs were enriched and quantified, subsequently were sequenced on the DNBSEQ-T7 sequencer (MGI Tech Co., Ltd., China) utilizing the PE150 model. For each RNA-sequencing sample, three separate libraries were generated. Following the filtration of the raw reads, the clean reads were matched to the genome of <i>P. fluorescens</i> PF08 (GenBank accession number CP032618.1). Genes differentially expressed between groups were identified using the edgeR package (version 3.12.1). |log2 fold change| &gt; 0.32 and an adjusted P value &lt; 0.05 were used to judge the statistical significance of gene expression differences. Files Included: QC File: Quality control metrics for RNA-seq data. DEG Analysis: Lists and annotations of differentially expressed genes. GO and KEGG Enrichment Results: Enrichment analysis results detailing the biological pathways and processes affected by the observed DEGs.
DOI: 10.3535/lp9-zqe-y2p
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qpw-hgt-zqw
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1194967.v7
title: P.ISSST 2014 - Proceedings of the International Symposium Sustainable Systems and Technologies, v2 (2014)

description: Proceedings of the International Symposium on Sustainable Systems and Technologies (ISSN 2329-9169) is published annually by the Sustainable Conoscente Network. Melissa Bilec and Jun-ki Choi, co-editors. ISSSTNetwork@gmail.com. ISSN 2329-9169
DOI: 10.6084/m9.figshare.27989204.v1
title: Development of Assessment Tools for Enhancing Management and Promoting Health in Schools

description: Psychological distress affects work performance, compromises teaching quality, and is among teachers’ leading causes of absenteeism. In Brazil, the prevalence of mental disorders among teachers ranges from 23% to 74%. Understanding the predictors of psychological distress among educators is essential, particularly those related to the work context and the leadership styles of school principals. These variables influence the well-being of school staff, teachers’ health, and educational outcomes. The data were used to conduct three studies aimed at (a) developing instruments to assess the teaching work context, (b) creating a measure for assessing school principals’ leadership styles through external evaluation, and (c) analyzing the impact of the work context, school principals’ leadership styles, and sociodemographic variables on the incidence of depression among K-12 teachers.
DOI: 10.3535/yvk-6bq-ffs
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12274319.v1
title: Data from: Sampling understory birds in different habitat types using point counts and camera traps

description: Original data from: Fontúrbel et al. (2020) Sampling understory birds in different habitat types using from point counts and camera traps. Ecological Indicators. doi: 10.1016/j.ecolind.2020.106863<br>This entry contains two files:<br>(1) richness_method.txt - Containing bird species richness data by method and habitat.(2) richness_groups.txt - Containing bird species richness data by group, method and habitat.<br>Data files are in text format (tab-separated text).
DOI: 10.3535/esg-d4x-048
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/glr-4kx-8kj
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rfn-3mz-pwy
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23629953.v1
title: Compiled Sediment Thickness Map of the Afar Triple Junction and Surrounding Region

description: The dataset here represents the compiled sediment thickness of the Afar Triple Junction and surrounding regions. The data was prepared by incorporating available seismic sediment thickness data into the grids extracted from GlobSed (Straume et al., 2019) and CRUST1.0(Laske et al., 2013). The data is presented in GMT netCDF Grid Format (*.grd).
DOI: 10.6084/m9.figshare.25375108.v2
title: Raw datasets xlsx

description: Effect of chicory forage and its active ingredients on growth performance and enteritis remedy in juvenile ostriches
DOI: 10.3535/2ra-cqm-fj9
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/em1-9qx-gsx
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16817455.v1
title: Dataset_Telomere_Tac.xlsx

description: Relation between Leucocyte telomere lenght and total antioxidative capacity in males
DOI: 10.6084/m9.figshare.21901731.v1
title: Dataset: Spatiotemporal overlap with invasive wild pigs (Sus scrofa) varies by species and season in a temperate ecosystem

description: Count and detection data by season for 10 vertebrate species in a temperate ecosystem of South Carolina, USA. Count data were used in N-mixture analyses following the parameterization of Royle (2004), with the relative importance of various sampling occasion and site-specific characteristics examined in an AIC model selection framework. Detection data were used to examine diel activity overlap between wild pigs and other species following the kernel density method developed by Ridout and Linkie (2009). We collected the species data with wildlife cameras in the year 2020 using a grid sampling design. Our winter, spring, summer, and fall survey periods were the first two weeks in February, May, August, and November, respectively. More detailed information may be found in Saldo et al. 2023.
DOI: 10.3535/bhx-1xg-kh2
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7562651.v1
title: Development and evaluation of prediction equations for methane emission from Nellore cattle

description: ABSTRACT. Dry matter intake (DMI), nutrient intake and enteric CH4 emission were evaluated in 48 Nellore cattle (392 ± 27 days of age). Equations were generated from intake data and evaluated using root mean square prediction error (RMSPE), and validated by cross-validation. Equations that included DMI and hemicellulose intake (HEMI) [ C H 4 M J d - 1 = 4.08 ± 1.65 + 11.6 ± 2.34 D M I k g d - 1 - 33.4 ± 7.21 H E M I ( k g d - 1 ) ]; DMI and total carbohydrate intake (TCHI) [ C H 4 M J d - 1 = 5.26 ± 1.69 - 6.3 ± 1.47 D M I k g d - 1 + 8.8 ± 1.81 T C I k g d - 1 ]; metabolizable energy intake (MEI) and cellulose intake (CELI) [ C H 4 M J d - 1 = 5.16 ± 1.72 - 0.13 ± 0.048 M E I M J d - 1 + 7.37 ± 1.53 C E L I k g d - 1 ], and non-fiber carbohydrate intake (NFCI) [ C H 4 M J d - 1 = 3.14 ± 1.48 + 3.65 ± 1.05 N F C I k g d - 1 ] resulted in the lowest RMSPE (14.3, 14.1, 14.3 and 14.7%, respectively). When literature equations were evaluated using our database, the most accurate predictions were obtained with equations that included DMI and lignin intake (RMSPE = 15.27%) and MEI, acid detergent fiber intake and lignin intake (RMSPE = 15.7%). The mean error of predicting enteric CH4 emission with the equations developed in this study based on DMI and nutrient intake is 17% and the most accurate predictions are obtained with equations including DMI, carbohydrate intake and MEI.
DOI: 10.6084/m9.figshare.c.3722950_d3.v1
title: MOESM3 of Tubulointerstitial nephritis antigen-like 1 protein is downregulated in the placenta of pre-eclamptic women

description: Additional file 3: Table S2. Western Blot normalization calculations.
DOI: 10.6084/m9.figshare.c.3803704_d2.v1
title: Additional file 11: of The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants

description: Nucleotide jmjC sequences in fasta format. (FAA 1770 kb)
DOI: 10.3535/9gf-mpg-v6l
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y79-52j-5ya
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7151210.v1
title: Dataset

description: Involvement of gliadin in increased intestinal permeability leading to NSAID-induced small-intestinal damage
DOI: 10.3535/1lw-hdp-pjg
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/48a-ssn-4e4
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16565476.v1
title: Effect of initiating biologics compared to intensifying conventional DMARDs on clinical and MRI outcomes in established rheumatoid arthritis patients in clinical remission: Secondary analyses of the IMAGINE-RA trial

description: To compare the effect of treat-to-target-based escalations in conventional synthetic disease-modifying antirheumatic drugs (csDMARDs) and biologics on clinical disease activity and magnetic resonance imaging (MRI) inflammation in a rheumatoid arthritis (RA) cohort in clinical remission. One-hundred patients with established RA, Disease Activity Score based on 28-joint count–C-reactive protein (DAS28-CRP) &lt; 3.2, and no swollen joints (hereafter referred to as ‘in clinical remission’) who received csDMARDs underwent clinical evaluation and MRI of the wrist and second to fifth metacarpophalangeal joints every 4 months. They followed a 2 year MRI treatment strategy targeting DAS28-CRP ≤ 3.2, no swollen joints, and absence of MRI osteitis, with predefined algorithmic treatment escalation: first: increase in csDMARDs; second: adding a biologic; third: switch biologic. MRI osteitis and Health Assessment Questionnaire (HAQ) (co-primary outcomes) and MRI combined inflammation and Simplified Disease Activity Index (SDAI) (key secondary outcomes) were assessed 4 months after treatment change and expressed as estimates of group differences. Statistical analyses were based on the intention-to-treat population analysed using repeated-measures mixed models. Escalation to first biologic compared to csDMARD escalation more effectively reduced MRI osteitis (difference between least squares means 1.8, 95% confidence interval 1.0–2.6), HAQ score (0.08, 0.03–0.1), MRI combined inflammation (2.5, 0.9–4.1), and SDAI scores (2.7, 1.9–3.5). Treat-to-target-based treatment escalations to biologics compared to escalation in csDMARDs more effectively improved MRI inflammation, physical function, and clinical disease activity in patients with established RA in clinical remission. Treatment escalation in RA patients in clinical remission reduces clinical and MRI-assessed disease activity. Clinicaltrials.gov identifier: NCT01656278
DOI: 10.6084/m9.figshare.7198280.v1
title: CoCoScore Supplementary Data v1.0

description: Supplementary Data: CoCoScore: Context-aware co-occurrence scoring for text mining applications using distant supervision<br># Text mining dictionaries<br>The entities file (entities.tsv.gz), names file (names.tsv.gz), and groups file (groups.tsv.gz) were used to identify proteins/genes, diseases, and tissues in the PubMed + PMC corpus.Please check the following README for usage of these files: https://bitbucket.org/larsjuhljensen/tagger/src/default/README.md<br># Datasets and pre-trained sentence classification models<br>## H. sapiens disease-gene associations<br>Training dataset: dataset_9606_-26_train.tsv.gzTest dataset: dataset_9606_-26_test.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_9606_-26.ftz<br>## H. sapiens tissue-gene associations<br>Training dataset: dataset_9606_-25_train.tsv.gzTest dataset: dataset_9606_-25_test.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_9606_-25.ftz<br>## H. sapiens functional protein-protein associations<br>Training dataset: dataset_9606_9606_train.tsv.gzTest dataset: dataset_9606_9606_test.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_9606_9606.ftz<br>## D. melanogaster functional protein-protein associations<br>Training dataset: dataset_7227_7227_train.tsv.gzTest dataset: dataset_7227_7227_test.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_7227_7227.ftz<br>## S. cerevisiae functional protein-protein associations<br>Training dataset: dataset_4932_4932_train.tsv.gzTest dataset: dataset_4932_4932_test.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_4932_4932.ftz<br>## H. sapiens physical protein-protein interactions<br>Training dataset: dataset_9606_9606_train_physical.tsv.gzTest dataset: dataset_9606_9606_test_physical.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_9606_9606_physical.ftz<br>## D. melanogaster physical protein-protein interactions<br>Training dataset: dataset_7227_7227_train_physical.tsv.gzTest dataset: dataset_7227_7227_test_physical.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_7227_7227_physical.ftz<br>## S. cerevisiae physical protein-protein interactions<br>Training dataset: dataset_4932_4932_train_physical.tsv.gzTest dataset: dataset_4932_4932_test_physical.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_4932_4932_physical.ftz<br># Pre-trained word embeddings<br>Pre-trained fastText word embeddings can be found in: fasttext_sg_masked_dim_300_epoch_5_lr_0.05_minn_3_maxn_6_ws_5.vec.gz
DOI: 10.17632/9rk6wv5vmy
title: Direct computation of the magnetic shell parameter

description: Title of program: SHELL Catalogue Id: AAEA_v1_0 Nature of problem The magnetic coordinates B and L are adiabatic invariants of the motion of charged particles trapped in the magnetic field of the earth and, therefore, convenient for correlating measured particle fluxes. Versions of this program held in the CPC repository in Mendeley Data AAEA_v1_0; SHELL; 10.1016/0010-4655(72)90051-3 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/0n1-vtg-0gd
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kcw-dy0-vmz
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13717084.v3
title: Chlorophyll-a Statistics Summary (2003-2020)

description: <b>Chlorophyll-a </b>total statistics summary (2003-2019), including mean, max, min, range, and standard deviation (sd) in GeoTIFF format.<br>Review publication for a more detailed data description.For R users, an R script has been provided to download data from Figshare directly from R. Script can be found at https://doi.org/10.6084/m9.figshare.13692037 and https://rpubs.com/mcastan2/DGCC_auxiliary_material with additional auxiliary material.
DOI: 10.6084/m9.figshare.28551866.v1
title: <b>Epigenetic Regulation of Ovarian Cancer: FTO Downregulation Enhances Tumor Progression via m6A Methylation</b>

description: This study explores the role of FTO-mediated m6A RNA methylation in ovarian cancer progression. Bioinformatics and clinical analyses revealed significant FTO downregulation in tumor tissues, correlating with elevated m6A levels and enhanced oncogenic transcript stability. Functional assays demonstrated that FTO knockout promotes tumor cell proliferation, migration, and invasion, while FTO overexpression suppresses these phenotypes in vitro and reduces tumor burden in xenograft models. The dataset includes raw RNA/protein expression data, m6A quantification, functional assay results (CCK-8, Transwell, flow cytometry), and bioinformatics scripts, providing insights into FTO as a potential therapeutic target for ovarian cancer.
DOI: 10.3535/2gw-q82-ntf
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qbj-1pw-92n
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25340686.v1
title: <b><i>Investigating the relationship between social and physical cognitive tasks in a wild bird</i></b>

description: Dataset accompanying the article titled 'Investigating the relationship between social and physical cognitive tasks in a wild bird'.
DOI: 10.6084/m9.figshare.25365778.v1
title: S2 GPOC Tables.xlsx

description: S2 GPOC Tables.
DOI: 10.3535/4hn-rc0-kx2
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jef-cmv-q1f
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12611996.v1
title: Application_Grid.xlsx

description: For use in applying to UK academic jobs, aids in focusing on essential, desirable and transferable criteria for CV and cover letters with the aim of being shortlisted for interview.<br>Can be modified for use in any location or job field.<br><br>Based on advice from Dr. Peter Matthews @urbaneprofessor https://twitter.com/urbaneprofessor/status/1003653689150754816
DOI: 10.6084/m9.figshare.28235393.v1
title: Growth data for ground tit nestlings

description: This data includes growth measurements of Tibetan ground tit (Pseudopodoces humilis) nestlings, including body mass and wing length, collected in Tibet. The data has been utilized in the study titled "Cooperative breeding benefits female nestlings more in a Tibetan bird" (Gao, H.X. & Lu, X.).The data were gathered over several years by a team of dedicated researchers who invested substantial effort into its collection and organization. We kindly request that you contact us before using this data (xlu@whu.edu.cn). Your feedback and communication are crucial to ensuring the proper use of the data and to support the ongoing advancement of this research.
DOI: 10.17632/grf727symg
title: Data for: “The last phylum”: Occupation of Bryozoa morpho-ecospace (colony growth habits) during the early phase of the Great Ordovician Biodiversification Event

description: Categorical data for bryozoan growth habits for all known Early to Middle Ordovician species.
DOI: 10.3535/299-tw9-fby
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cb2-0jf-njp
title: Baltoniodus alobatus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13259522.v2
title: Table 1.docx

description: Comparison of general information and condition of patients of two groups. N(Number),Time window of operation(The time from patients’cervical cord be injured to received operation treatment),H(Hour),D(Day),W(Week),Damaged segment(The segment of injured cervical vertebra), ASIA (The American Spinal Injury Association). <i></i><sub></sub><sup></sup><b></b><br>
DOI: 10.3535/r2c-vle-av6
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vlp-ffy-pqc
title: Eoplacognathus elongatus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14945157.v1
title: Table 53. Impact of article (Total citation for Top 10 qualitative articles)

description: Impact of article (Total citation for Top 10 qualitative articles)<b></b>
DOI: 10.3535/5mm-ba5-3tr
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r9c-10s-r5h
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13206588.v1
title: Code files from Post-buckling analysis of functionally graded multilayer graphene platelet reinforced composite cylindrical shells under axial compression

description: The code files for the numerical results (Symmetric-Down.nb, Symmetric-Initial.nb, Symmetric-Second.nb and Symmetric-Up.nb) and corresponding Instuction files (Instruction.pdf) are included
DOI: 10.6084/m9.figshare.25360330.v1
title: Metadata: ARK IDs for CT-scanned specimens

description: This file contains ARK IDs (permanent object identifiers) and metadata for all CT-scan derived data used in this research project and reposited on MorphoSource.
DOI: 10.6084/m9.figshare.3567633.v1
title: Appendix A. Estimating height–area relationships.

description: Estimating height–area relationships.
DOI: 10.3535/qfy-l20-fzy
title: Eoplacognathus elongatus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wlf-8gr-lxd
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22574443.v1
title: Kinematical dataset of pea plants

description: The kinematical data is about circumnutation patterns in pea plants.
DOI: 10.6084/m9.figshare.3530591.v1
title: Appendix A. Study islands, showing from which islands each plant species was collected.

description: Study islands, showing from which islands each plant species was collected.
DOI: 10.3535/2f7-vef-fyc
title: Palaeophycus acicula

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3dy-evp-e8c
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.