cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13534982
title: Additional file 8 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 8. Historic breed composition of the Thai breed. R script for analysing the contribution of other breeds to the Thai breed.
DOI: 10.6084/m9.figshare.13534964
title: Additional file 2 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 2. Completeness of Thai cat pedigrees. R script for analysing pedigree completeness per generation for males and females separately.
DOI: 10.6084/m9.figshare.13534970.v1
title: Additional file 4 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 4. Historic development of mean kinship and inbreeding. R script to calculate and plot historic kinship and inbreeding of the Oriental Shorthair breed, between 1955 and 1999, using Additional file 1 as input.
DOI: 10.6084/m9.figshare.13534973.v1
title: Additional file 5 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 5. Comparison of distribution of mean kinship and inbreeding. R script to plot the distribution of kinship and inbreeding coefficients of the Thai and Siamese breeds, using Additional file 1 as input. This produces Fig. 4.
DOI: 10.6084/m9.figshare.13534979
title: Additional file 7 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 7. Cluster analysis of the Siamese breed. R script for hierarchical (UPGMA) and model-based cluster analysis of the Siamese breed (parents of kittens, born in 1998–1999), containing the ancestors of the newly registered Thai breed. This produces Table 2. The figures showing the optimal number of clusters are left out from the main text.
DOI: 10.6084/m9.figshare.13534961
title: Additional file 1 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 1. Collected traditional Siamese pedigree data. Pseudonymized version (December 2018). Breeds are recoded using the EMS abbreviations. Unfortunately, the country of origin is registered together with the pedigree name. This information gets lost upon recoding pedigree names to numeric data.
DOI: 10.6084/m9.figshare.13534967
title: Additional file 3 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 3. Historic development of mean kinship and inbreeding. R script to calculate and plot historic kinship and inbreeding of the Thai and Siamese breeds, using. Additional file 1 as input. This produces Figs. 2 and 3. It runs overnight and requires at least 12 GByte RAM. If more resources are available, alternative optiSel functions can be used to yield a more compact code.
DOI: 10.6084/m9.figshare.13534976.v1
title: Additional file 6 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 6. Cluster analysis of the Thai breed. R script for hierarchical (UPGMA) and model-based cluster analysis of the Thai breed (parents of kittens, born in 2016–2017). This produces Table 1 and Figs. 5, 6, 7 and 8.
DOI: 10.6084/m9.figshare.13534976
title: Additional file 6 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 6. Cluster analysis of the Thai breed. R script for hierarchical (UPGMA) and model-based cluster analysis of the Thai breed (parents of kittens, born in 2016–2017). This produces Table 1 and Figs. 5, 6, 7 and 8.
DOI: 10.6084/m9.figshare.13534979.v1
title: Additional file 7 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 7. Cluster analysis of the Siamese breed. R script for hierarchical (UPGMA) and model-based cluster analysis of the Siamese breed (parents of kittens, born in 1998–1999), containing the ancestors of the newly registered Thai breed. This produces Table 2. The figures showing the optimal number of clusters are left out from the main text.
DOI: 10.5067/viirs/vnp46a1_nrt.001
title: VIIRS/NPP Daily Gridded Day Night Band 500m Linear Lat Lon Grid Night NRT
DOI: 10.6084/m9.figshare.13534991
title: Additional file 1 of Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis

description: Additional file 1.
DOI: 10.6084/m9.figshare.13534991.v1
title: Additional file 1 of Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis

description: Additional file 1.
DOI: 10.6084/m9.figshare.13535044
title: Additional file 3 of Examination of hydrogen cross-feeders using a colonic microbiota model

description: Additional file 3: Contains the model data analysed.
DOI: 10.6084/m9.figshare.13535044.v1
title: Additional file 3 of Examination of hydrogen cross-feeders using a colonic microbiota model

description: Additional file 3: Contains the model data analysed.
DOI: 10.6084/m9.figshare.13535189.v1
title: Additional file 1 of patRoon: open source software platform for environmental mass spectrometry based non-target screening

description: Additional file 1. Overview of software and databases that are used in the implementation in patRoon. This table summarizes all the software and databases that are described in the implementation section of the main text.
DOI: 10.6084/m9.figshare.13535198
title: Additional file 4 of patRoon: open source software platform for environmental mass spectrometry based non-target screening

description: Additional file 4. Source code for benchmarks. Archive with several R scripts that were used to perform the parallelization benchmarks.
DOI: 10.6084/m9.figshare.13535198.v1
title: Additional file 4 of patRoon: open source software platform for environmental mass spectrometry based non-target screening

description: Additional file 4. Source code for benchmarks. Archive with several R scripts that were used to perform the parallelization benchmarks.
DOI: 10.6084/m9.figshare.13535201
title: Additional file 5 of patRoon: open source software platform for environmental mass spectrometry based non-target screening

description: Additional file 5. Demonstration suspect list. Suspect list that was used for the patRoon demonstration. The list was based on the detected compounds reported in [11], and SMILES identifiers for each suspect were collected from PubChem [24].
DOI: 10.6084/m9.figshare.13535189
title: Additional file 1 of patRoon: open source software platform for environmental mass spectrometry based non-target screening

description: Additional file 1. Overview of software and databases that are used in the implementation in patRoon. This table summarizes all the software and databases that are described in the implementation section of the main text.
DOI: 10.6084/m9.figshare.13535204.v1
title: Additional file 6 of patRoon: open source software platform for environmental mass spectrometry based non-target screening

description: Additional file 6. Algorithm consensus demonstration. Script that was used to generate the results for the feature algorithm consensus demonstration.
DOI: 10.6084/m9.figshare.13535204
title: Additional file 6 of patRoon: open source software platform for environmental mass spectrometry based non-target screening

description: Additional file 6. Algorithm consensus demonstration. Script that was used to generate the results for the feature algorithm consensus demonstration.
DOI: 10.6084/m9.figshare.13535201.v1
title: Additional file 5 of patRoon: open source software platform for environmental mass spectrometry based non-target screening

description: Additional file 5. Demonstration suspect list. Suspect list that was used for the patRoon demonstration. The list was based on the detected compounds reported in [11], and SMILES identifiers for each suspect were collected from PubChem [24].
DOI: 10.6084/m9.figshare.13535284
title: Additional file 2 of What do we mean by individual capacity strengthening for primary health care in low- and middle-income countries? A systematic scoping review to improve conceptual clarity

description: Additional file 2: Data extraction tables.
DOI: 10.6084/m9.figshare.13535284.v1
title: Additional file 2 of What do we mean by individual capacity strengthening for primary health care in low- and middle-income countries? A systematic scoping review to improve conceptual clarity

description: Additional file 2: Data extraction tables.
DOI: 10.6084/m9.figshare.13535315
title: Additional file 3 of Behaviour change approaches for individuals with diabetes to improve foot self-management: a scoping review

description: Additional file 3.
DOI: 10.6084/m9.figshare.13535315.v1
title: Additional file 3 of Behaviour change approaches for individuals with diabetes to improve foot self-management: a scoping review

description: Additional file 3.
DOI: 10.6084/m9.figshare.13535344.v1
title: Additional file 3 of Ever-increasing viral diversity associated with the red imported fire ant Solenopsis invicta (Formicidae: Hymenoptera)

description: Additional file 3. Table S3: Viral conserved domains detected in ORFs from putative new viruses based on Conserved Domains Database (CDD).
DOI: 10.6084/m9.figshare.13535341.v1
title: Additional file 2 of Ever-increasing viral diversity associated with the red imported fire ant Solenopsis invicta (Formicidae: Hymenoptera)

description: Additional file 2. Table S2: Open reading frames (ORFs) characterization from putative new viruses based on ORFinder followed by BLASTp analyses, as implemented at National Center for Biotechnology Information Search database (NCBI).
DOI: 10.6084/m9.figshare.13535338.v1
title: Additional file 1 of Ever-increasing viral diversity associated with the red imported fire ant Solenopsis invicta (Formicidae: Hymenoptera)

description: Additional file 1. Table S1: Descriptive statistics of fire ant transcriptome datasets analyzed in this study.
DOI: 10.6084/m9.figshare.13535341
title: Additional file 2 of Ever-increasing viral diversity associated with the red imported fire ant Solenopsis invicta (Formicidae: Hymenoptera)

description: Additional file 2. Table S2: Open reading frames (ORFs) characterization from putative new viruses based on ORFinder followed by BLASTp analyses, as implemented at National Center for Biotechnology Information Search database (NCBI).
DOI: 10.6084/m9.figshare.13535338
title: Additional file 1 of Ever-increasing viral diversity associated with the red imported fire ant Solenopsis invicta (Formicidae: Hymenoptera)

description: Additional file 1. Table S1: Descriptive statistics of fire ant transcriptome datasets analyzed in this study.
DOI: 10.6084/m9.figshare.13535347.v1
title: Additional file 4 of Ever-increasing viral diversity associated with the red imported fire ant Solenopsis invicta (Formicidae: Hymenoptera)

description: Additional file 4. Table S4: Data set used in the compositional analyses.
DOI: 10.6084/m9.figshare.13535344
title: Additional file 3 of Ever-increasing viral diversity associated with the red imported fire ant Solenopsis invicta (Formicidae: Hymenoptera)

description: Additional file 3. Table S3: Viral conserved domains detected in ORFs from putative new viruses based on Conserved Domains Database (CDD).
DOI: 10.6084/m9.figshare.13535347
title: Additional file 4 of Ever-increasing viral diversity associated with the red imported fire ant Solenopsis invicta (Formicidae: Hymenoptera)

description: Additional file 4. Table S4: Data set used in the compositional analyses.
DOI: 10.6084/m9.figshare.13535342
title: Additional file 10 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 10: Table S5. Hypermethylated positions in strain KA53 for gene LOC116934226 by exon.
DOI: 10.6084/m9.figshare.13535345
title: Additional file 11 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 11: Table S6. Enriched GO terms for one or five plus enriched CpGs hypermethylated in each strain for Biological Process and Molecular Function GO categories (3xuCH dataset).
DOI: 10.6084/m9.figshare.13535348
title: Additional file 12 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 12: Table S7. Gene annotations for genes overlapping CpGs significantly associated with ageing in D. magna.
DOI: 10.6084/m9.figshare.13535342.v1
title: Additional file 10 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 10: Table S5. Hypermethylated positions in strain KA53 for gene LOC116934226 by exon.
DOI: 10.6084/m9.figshare.13535348.v1
title: Additional file 12 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 12: Table S7. Gene annotations for genes overlapping CpGs significantly associated with ageing in D. magna.
DOI: 10.6084/m9.figshare.13535354
title: Additional file 14 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 14: Table S9. Summary table of GLM results for predicted epigenetic age against Age and Strain ‘3xuCH’ and ‘No-CH’ datasets.
DOI: 10.6084/m9.figshare.13535354.v1
title: Additional file 14 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 14: Table S9. Summary table of GLM results for predicted epigenetic age against Age and Strain ‘3xuCH’ and ‘No-CH’ datasets.
DOI: 10.6084/m9.figshare.13535345.v1
title: Additional file 11 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 11: Table S6. Enriched GO terms for one or five plus enriched CpGs hypermethylated in each strain for Biological Process and Molecular Function GO categories (3xuCH dataset).
DOI: 10.6084/m9.figshare.13535360
title: Additional file 16 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 16. R code for combining complementary CpGs, Cox’s proportional hazards, DSS analysis, topGO analysis, and penalised regression.
DOI: 10.6084/m9.figshare.13535360.v1
title: Additional file 16 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 16. R code for combining complementary CpGs, Cox’s proportional hazards, DSS analysis, topGO analysis, and penalised regression.
DOI: 10.6084/m9.figshare.13535363
title: Additional file 17 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 17. Longevity experiment results for the two strains under caloric restriction and normal food input to the Cox’s proportional hazards analyses, which were run separately for each strain. H = normal food individual; L = caloric restricted individual. Individuals were changed to status ‘2′ on death in line with survival R program requirements.
DOI: 10.6084/m9.figshare.13535369
title: Additional file 1 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 1. MultiQC results for the ‘3xuCH’ filteressd datasets in html format.
DOI: 10.6084/m9.figshare.13535369.v1
title: Additional file 1 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 1. MultiQC results for the ‘3xuCH’ filteressd datasets in html format.
DOI: 10.6084/m9.figshare.13535372
title: Additional file 2 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 2. MultiQC results for the ‘No-CH’ filtered datasets in html format.
DOI: 10.6084/m9.figshare.13535351
title: Additional file 13 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 13: Table S8. CpGs with a significant contribution to epigenetic age and their coefficients after penalised lasso regression for ‘3xuCH’ and ‘No-CH’ datasets.
DOI: 10.6084/m9.figshare.13535366
title: Additional file 18 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 18. Gene component coordinates bed file for the KIT1 D. magna genome assembly. Used to calculate CpG rates per kb for each category shown in Fig. 2c, d.
DOI: 10.6084/m9.figshare.13535387
title: Additional file 7 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 7: Table S3. Number of DSS significant CpG sites for each factor and their interactions at each filtering level and number of SNPs predicted in each strain by BS-SNPer.
DOI: 10.6084/m9.figshare.13535366.v1
title: Additional file 18 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 18. Gene component coordinates bed file for the KIT1 D. magna genome assembly. Used to calculate CpG rates per kb for each category shown in Fig. 2c, d.
DOI: 10.6084/m9.figshare.13535384
title: Additional file 6 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 6: Table S2. Metrics for 5% plus CpG methylated sites across exons, generated in CpGTools and used to create Fig. 2d).
DOI: 10.6084/m9.figshare.13535384.v1
title: Additional file 6 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 6: Table S2. Metrics for 5% plus CpG methylated sites across exons, generated in CpGTools and used to create Fig. 2d).
DOI: 10.6084/m9.figshare.13535390.v1
title: Additional file 8 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 8: Table S4. DSS output for significant CpGs for Age and Strain for ‘3xuCH’ and ‘No-CH’ datasets. Each category occurs consecutively in the file.
DOI: 10.6084/m9.figshare.13535363.v1
title: Additional file 17 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 17. Longevity experiment results for the two strains under caloric restriction and normal food input to the Cox’s proportional hazards analyses, which were run separately for each strain. H = normal food individual; L = caloric restricted individual. Individuals were changed to status ‘2′ on death in line with survival R program requirements.
DOI: 10.6084/m9.figshare.13535378.v1
title: Additional file 4 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 4: Table S1. Metrics for 5% plus CpG methylated sites across gene-bodies, generated in CpGTools and used to create Fig. 2c).
DOI: 10.6084/m9.figshare.13535378
title: Additional file 4 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 4: Table S1. Metrics for 5% plus CpG methylated sites across gene-bodies, generated in CpGTools and used to create Fig. 2c).
DOI: 10.6084/m9.figshare.13535372.v1
title: Additional file 2 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 2. MultiQC results for the ‘No-CH’ filtered datasets in html format.
DOI: 10.6084/m9.figshare.13535390
title: Additional file 8 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 8: Table S4. DSS output for significant CpGs for Age and Strain for ‘3xuCH’ and ‘No-CH’ datasets. Each category occurs consecutively in the file.
DOI: 10.6084/m9.figshare.13535351.v1
title: Additional file 13 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 13: Table S8. CpGs with a significant contribution to epigenetic age and their coefficients after penalised lasso regression for ‘3xuCH’ and ‘No-CH’ datasets.
DOI: 10.6084/m9.figshare.13535399
title: Additional file 2 of Improved analysis of CRISPR fitness screens and reduced off-target effects with the BAGEL2 gene essentiality classifier

description: Additional file 2: Table S1. The number of dependency calls in BAGEL2 (BF &gt; 7) and CERES (score
DOI: 10.6084/m9.figshare.13535387.v1
title: Additional file 7 of DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna

description: Additional file 7: Table S3. Number of DSS significant CpG sites for each factor and their interactions at each filtering level and number of SNPs predicted in each strain by BS-SNPer.
DOI: 10.6084/m9.figshare.13535399.v1
title: Additional file 2 of Improved analysis of CRISPR fitness screens and reduced off-target effects with the BAGEL2 gene essentiality classifier

description: Additional file 2: Table S1. The number of dependency calls in BAGEL2 (BF &gt; 7) and CERES (score
DOI: 10.6084/m9.figshare.13535432
title: Additional file 2 of Genomic profile of metastatic breast cancer patient-derived xenografts established using percutaneous biopsy

description: Additional file 2. The information on sequencing data.
DOI: 10.6084/m9.figshare.13535432.v1
title: Additional file 2 of Genomic profile of metastatic breast cancer patient-derived xenografts established using percutaneous biopsy

description: Additional file 2. The information on sequencing data.
DOI: 10.6084/m9.figshare.13535456
title: Additional file 3 of Transition of microbiota in chicken cecal droppings from commercial broiler farms

description: Additional file 3. Bacterial genera which relative abundances were significantly different both among the subgroups of age and feed type.
DOI: 10.6084/m9.figshare.13535453
title: Additional file 2 of Transition of microbiota in chicken cecal droppings from commercial broiler farms

description: Additional file 2. OTUs which relative abundances were significantly different among the subgroups of feed type but not among the subgroups of age.
DOI: 10.6084/m9.figshare.13535456.v1
title: Additional file 3 of Transition of microbiota in chicken cecal droppings from commercial broiler farms

description: Additional file 3. Bacterial genera which relative abundances were significantly different both among the subgroups of age and feed type.
DOI: 10.6084/m9.figshare.13535462.v1
title: Additional file 5 of Transition of microbiota in chicken cecal droppings from commercial broiler farms

description: Additional file 5 Prevalence of Salmonella in broiler chickens.
DOI: 10.6084/m9.figshare.13535450.v1
title: Additional file 1 of Transition of microbiota in chicken cecal droppings from commercial broiler farms

description: Additional file 1. OTUs which relative abundances were significantly different among the subgroups of age but not among the subgroups of feed type.