cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1175850.10fu
title: SH1175850.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175853.10fu
title: SH1175853.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175855.10fu
title: SH1175855.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175857.10fu
title: SH1175857.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175858.10fu
title: SH1175858.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175861.10fu
title: SH1175861.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1175862.10fu
title: SH1175862.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.bszjk4
title: Occurrence Download

description: A dataset containing 435 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Accipitriformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((150 60,180 60,180 90,150 90,150 60))"
 ]
}

 The dataset includes 435 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061855-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhdbvs
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brugmansia versicolor",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061851-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ye3met
title: Occurrence Download

description: A dataset containing 7910 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vitex negundo)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7910 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061853-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6zbcn
title: Occurrence Download

description: A dataset containing 10687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus parvifolius L.",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10687 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006430-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112029547
title: Cuneiform Tablet 1913.14.1519, Spurlock 1913.14.1519

description: [Text Description:] Document concerning silver ❧ [Text or Publication Number Note:] Spurlock 1913.14.1519; CDLI P421371 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Pale Yellowish Pink (5YR 8.5/3) Dark Gray (N 3.25/ 7.7% R) -discoloration ❧ [Physical Object Note:] 4.9 x 3.7 x 1.8 cm (33 g)
DOI: 10.15468/dl.jj9bfh
title: Occurrence Download

description: A dataset containing 118146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Magnoliopsida",
 "Year is 2012",
 "Country is Brazil"
 ]
}

 The dataset includes 118146 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057244-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112029772
title: Cuneiform Tablet 1913.14.1519, Spurlock 1913.14.1519

description: [Text Description:] Document concerning silver ❧ [Text or Publication Number Note:] Spurlock 1913.14.1519; CDLI P421371 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Pale Yellowish Pink (5YR 8.5/3) Dark Gray (N 3.25/ 7.7% R) -discoloration ❧ [Physical Object Note:] 4.9 x 3.7 x 1.8 cm (33 g)
DOI: 10.15468/dl.q3tawt
title: Occurrence Download

description: A dataset containing 595 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Taxus wallichiana Zucc."
 ]
}

 The dataset includes 595 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101641-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112029553
title: Cuneiform Tablet 1913.14.1519, Spurlock 1913.14.1519

description: [Text Description:] Document concerning silver ❧ [Text or Publication Number Note:] Spurlock 1913.14.1519; CDLI P421371 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Pale Yellowish Pink (5YR 8.5/3) Dark Gray (N 3.25/ 7.7% R) -discoloration ❧ [Physical Object Note:] 4.9 x 3.7 x 1.8 cm (33 g)
DOI: 10.15468/dl.875qtg
title: Occurrence Download

description: A dataset containing 128758 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea cyanus L."
 ]
}

 The dataset includes 128758 records from 1042 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0202346-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sj68vx
title: Occurrence Download

description: A dataset containing 415109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingCountry is Colombia",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset includes 415109 records from 203 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027184-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fwf5td
title: Occurrence Download

description: A dataset containing 1545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ramaria flava (Schaeff.) Quél.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1545 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064620-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xaxvb6
title: Occurrence Download

description: A dataset containing 6218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Azadirachta indica A.Juss."
 ]
}

 The dataset includes 6218 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0210958-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2wdnty
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces mexicanus Petrosyan et al., 2003"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013732-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14984578
title: AIVIVE: A Novel AI Framework for Enhanced In Vitro to In Vivo Extrapolation (IVIVE) of Toxicogenomics Data

description: The dataset consists of transcriptomic profiles from rat liver tissue, curated from Open TG-GATEs database (link in references), along with predictions generated by the AIVIVE generator model.

The transcriptomic profiles are derived from both in vitro and in vivo experiments involving single-dose treatments of various compounds. The data is preprocessed using the RMA (Robust Multi-array Average) method, which ensures that the data is adjusted for batch effects and other systematic variations.



Training Data: 80% of the data is used for training the machine learning models. This subset is based on the unique compounds, meaning each compound has corresponding transcriptomic data across different exposures.

Test Data: 20% of the data is held back as a test set to evaluate the model's performance and generalization ability.


The dataset was obtained from Download - Open TG-GATEs | LSDB Archive. RMA normalization was performed in R (version 4.4.1). Additionally, the predictions from the optimal AIVIVE generator model for both training and testing sets are included that were used for further analysis.

Files:



vitro_train_test.csv: Train and test transcriptomic profiles from in vitro experiments

vivo_train_test.csv: Train and test transcriptomic profiles from in vivo experiments

generator1_encoded_prediction_9962160_VivoGenerator.csv: Train predictions from the optimal generator

generator1_encoded_prediction_9962160_vivoGenerator_test.csv: Test predictions from the optimal generator
DOI: 10.5281/zenodo.14984579
title: AIVIVE: A Novel AI Framework for Enhanced In Vitro to In Vivo Extrapolation (IVIVE) of Toxicogenomics Data

description: The dataset consists of transcriptomic profiles from rat liver tissue, curated from Open TG-GATEs database (link in references), along with predictions generated by the AIVIVE generator model.

The transcriptomic profiles are derived from both in vitro and in vivo experiments involving single-dose treatments of various compounds. The data is preprocessed using the RMA (Robust Multi-array Average) method, which ensures that the data is adjusted for batch effects and other systematic variations.



Training Data: 80% of the data is used for training the machine learning models. This subset is based on the unique compounds, meaning each compound has corresponding transcriptomic data across different exposures.

Test Data: 20% of the data is held back as a test set to evaluate the model's performance and generalization ability.


The dataset was obtained from Download - Open TG-GATEs | LSDB Archive. RMA normalization was performed in R (version 4.4.1). Additionally, the predictions from the optimal AIVIVE generator model for both training and testing sets are included that were used for further analysis.

Files:



vitro_train_test.csv: Train and test transcriptomic profiles from in vitro experiments

vivo_train_test.csv: Train and test transcriptomic profiles from in vivo experiments

generator1_encoded_prediction_9962160_VivoGenerator.csv: Train predictions from the optimal generator

generator1_encoded_prediction_9962160_vivoGenerator_test.csv: Test predictions from the optimal generator
DOI: 10.3535/s6a-3yv-trl
title: Eurema

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ym4-2ef-b7c
title: Melanitis leda Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6f9-1yx-v8c
title: Euploea eunice (Godart)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/chn-8le-hk2
title: Drymonia dodonaea ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v0g-533-qk8
title: Furcula bifida (Brahm, 1787)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.r26zm4
title: Occurrence Download

description: A dataset containing 1472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Diveboard - Scuba diving citizen science observations)",
 "Geometry POLYGON((-86.8655 -36.18904,-18.71107 -36.18904,-18.71107 59.52714,-86.8655 59.52714,-86.8655 -36.18904))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pterois volitans (Linnaeus, 1758)"
 ]
}

 The dataset includes 1472 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097226-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/c75-h6y-0le
title: Sphinx ligustri Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kd0-her-dvn
title: Cerura (Cerura) vinula (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/neg-sy9-8d4
title: Cerura (Cerura) vinula (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wf8-3k0-8hp
title: Furcula furcula (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5nq-j3c-55r
title: Peridea anceps (Goeze, 1781)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mmh-bv3-t8t
title: Drymonia dodonaea ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1kw-xv2-6c3
title: Cirrochroa Doubleday, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bbq-8hz-5e4
title: Libythea myrrha Godart, 1819

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pc7-9bv-zwy
title: Mimas tiliae Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a3p-kxb-vxe
title: Drymonia ruficornis (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n3f-2w4-7dx
title: Hyles euphorbiae Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/re3-ha8-0wv
title: Zeuxidia luxerii Hübner, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hbz-1wx-hzf
title: Euploea phaenareta locupletior (Fruhstorfer, 1899)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r00-r8b-dpd
title: Euploea westwoodii Felder, C. & Felder, R., 1865

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2t4-lwl-n02
title: Nymphalidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m87-y5x-7sn
title: Taenaris domitilla Hewitson, 1861

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4ky-wfv-wbw
title: Coelites Westwood, 1850

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ylc-10j-a28
title: Cethosia biblis (Drury, 1770)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ml6-041-7cl
title: Drymonia querna ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/634-303-7k1
title: Cerura (Cerura) vinula (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ljr-qf0-veb
title: Notodonta dromedarius (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hds-qxq-xdn
title: Taenaris Hübner, 1819

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kkm-q31-aqd
title: Notodonta dromedarius (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.