cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3uv6a2
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bupleurum rotundifolium L., Bupleurum agrestinum Gand., 1880, Bupleurum griffithii, Bupleurum marginatum Noë, Bupleurum marginatum Noë ex H.Wolff, Bupleurum perfoliatum Lam., Bupleurum perfoliatum var. rotuncifolium (L.) Desv., Bupleurum perfoliatum var. rotundifolium (L.) Desv., Bupleurum rotundifolium f. oblongum Bornm., Bupleurum rotundifolium f. oblongum Bornm. ex H.Wolff, Bupleurum rotundifolium f. typicum H.Wolff, Bupleurum rotundifolium var. alpinum Lapeyr., Bupleurum rotundifolium var. petiolatum Gray, Diatropa rotundifolia (L.) Dumort., Perfoliata rotundifolia (L.) Fourr., Perfolisa obtusifolia Raf., Selinum perfoliatum (Lam.) E.H.L.Krause, Tenoria rotundifolia (L.) Bubani)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Geometry POLYGON((16.26355 48.15358,16.48014 48.15358,16.48014 48.27418,16.26355 48.27418,16.26355 48.15358))",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to January",
 "Month is less than or equal to September"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019244-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bu2qcu
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((15.793 47.931,16.367 47.931,16.367 48.351,15.793 48.351,15.793 47.931))",
 "TaxonKey is Cottus gobio Linnaeus, 1758"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019245-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4qhnf
title: Occurrence Download

description: A dataset containing 36836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhinella marina (Linnaeus, 1758)"
 ]
}

 The dataset includes 36836 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019242-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77hz7y
title: Occurrence Download

description: A dataset containing 36836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhinella marina (Linnaeus, 1758)"
 ]
}

 The dataset includes 36836 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019243-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28368213
title: Table S1 from A microscopic Burgess Shale: Small Carbonaceous Fossils (SCFs) from a deeper-water biota and the distribution of Cambrian nonmineralised faunas

description: Slide number and England Finder coordinates of figured fossil specimens.
DOI: 10.6084/m9.figshare.28368213.v1
title: Table S1 from A microscopic Burgess Shale: Small Carbonaceous Fossils (SCFs) from a deeper-water biota and the distribution of Cambrian nonmineralised faunas

description: Slide number and England Finder coordinates of figured fossil specimens.
DOI: 10.6084/m9.figshare.28368216
title: Data S1 from A microscopic Burgess Shale: Small Carbonaceous Fossils (SCFs) from a deeper-water biota and the distribution of Cambrian nonmineralised faunas

description: Catalogue and taxonomic attributions of recovered SCFs from the Hess River biota.
DOI: 10.6084/m9.figshare.28368216.v1
title: Data S1 from A microscopic Burgess Shale: Small Carbonaceous Fossils (SCFs) from a deeper-water biota and the distribution of Cambrian nonmineralised faunas

description: Catalogue and taxonomic attributions of recovered SCFs from the Hess River biota.
DOI: 10.5281/zenodo.13626716
title: Skogaryd data used for the paper: Evaluation of long-term carbon dynamics in a drained forested peatland using the ForSAFE-Peat Model.

description: Dataset of abiotic and carbon exchange variables for Skogaryd drained afforested peatland. The dataset include measurements of soil temperature, ground water level, and carbon exhange as well as modelled carbon fluxes performed with the model ForSAFE-Peat
DOI: 10.5281/zenodo.13626717
title: Skogaryd data used for the paper: Evaluation of long-term carbon dynamics in a drained forested peatland using the ForSAFE-Peat Model.

description: Dataset of abiotic and carbon exchange variables for Skogaryd drained afforested peatland. The dataset include measurements of soil temperature, ground water level, and carbon exhange as well as modelled carbon fluxes for the site performed with the model ForSAFE-Peat
DOI: 10.5281/zenodo.13629155
title: Skogaryd data used for the paper: Evaluation of long-term carbon dynamics in a drained forested peatland using the ForSAFE-Peat Model.

description: Dataset of abiotic and carbon exchange variables for Skogaryd drained afforested peatland. The dataset include measurements of soil temperature, ground water level, and carbon exhange as well as modelled carbon fluxes performed with the model ForSAFE-Peat
DOI: 10.5281/zenodo.14831429
title: Skogaryd data used for the paper: Evaluation of long-term carbon dynamics in a drained forested peatland using the ForSAFE-Peat Model.

description: Dataset of abiotic and carbon exchange variables for Skogaryd drained afforested peatland. The dataset include measurements of soil temperature, ground water level, and carbon exhange as well as modelled carbon fluxes performed with the model ForSAFE-Peat
DOI: 10.6084/m9.figshare.28368218.v1
title: Supplementary Material for: Failures of Sealed Molars: Three-Year Results from a Multi-Center, Prospective Study in Public Dental Service in Norway

description: The efficacy of fissure sealants (FS) in controlling occlusal caries is well documented. However, several factors can potentially modify the caries-preventive effect of FS and their failure rate in real life might be higher than in controlled experimental settings. 

The aim of this study was to prospectively examine failures and risk factors in sealed first permanent molars (FPMs) with sound occlusal surfaces or initial caries lesions of children in a practice-based setting in public dental service (PDS) in Norway. Methods. Children aged 6 to 10 years considered at high caries risk (D3MFT/d3mft &gt; 0) were recruited by dentists and dental hygienists during routine examination at local dental clinics in PDS. After the application, resin-based FS were maintained according to clinicians’ conventional procedures. Occlusal surface/FS status and the following treatment were registered at 6- , 12-, 24- and 36-months. The outcome was categorized into success, minor failure, and failure of sealed FPM based on a combination of diagnosis of occlusal surface/FS status and the following treatment at each follow-up. Univariable and multivariable Cox survival analyses were used to investigate potential risk factors for failure. 

Results. Out of 409 participants, 4% (16) were lost to follow-up. Of 393 FPMs, 72% (284) were evaluated as success, 9% (34) as minor failure, and 19% (75) failed during the 36-months of this study period: 13% (51) received FS reapplication and 6% developed dentine caries or were restored. One third of FS were additionally treated with fluoride varnish (FV) at least once during the follow-up. Occlusal surface with caries grade 1-2 (vs intact) increased (adHR 1.9, 95% CI 1.1-3.1), while FV application over FS decreased hazards (adHR 0.4, 95% CI 0.3-0.7) for failure. The clinic’s county was associated with failure. 

Conclusion. After 3-year follow-up, nearly one out of five sealed FPMs failed, i.e., had to be resealed, developed dentine caries, or were restored. Initial caries lesion on occlusal surface increased while FV application over FS reduced risk for failure. Moreover, regional differences in sealed FPM failures were observed.
DOI: 10.15468/dl.zr9h2d
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Silene scabriflora subsp. aemilii-guineae Carlón, J.M.González, M.Laínz, Moreno Mor., Rodr.Berd. & Ó.Sánchez"
 ]
}

 The dataset includes 25 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019247-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7429483
title: Single-cell data of "Growth rate controls the sensitivity of gene regulatory circuits"

description: Single-cell data of microfluidic experiments reported in the article Growth rate controls the sensitivity of gene regulatory circuits.


The corresponding image dataset, together with raw export files from the image analysis software MoMA, is available at https://doi.org/10.5281/zenodo.6684959. 


Two series of experiments of have been conducted, where bacterial growth and lac operon expression are monitored using phase contrast and epifluorescence microscopy (measuring a translational LacZ-GFP fusion):



	
"Transient growth arrest": Escherichia coli cells are exposed to M9 minimal medium with glycerol, and then to media containing TMG inducer either with glycerol or with lactulose (data from 4 independent experiments).
	
"Concentration-dependent glucose/lactose preference": Escherichia coli cells pre-grown in M9 minimal medium with 0.2% glucose are grown in mother machine microfluidic chips in one of the following conditions (data from 6 independent experiments with up to 8 conditions per experiments):
	

		
lactose 0.02% with variable glucose concentration (2µM to 128µM)
		
variable glucose concentration (2µM to 128µM)
		
variable glucose concentration (2µM to 128µM) with 200µM IPTG.
	
	



Each subdirectory corresponds to a given date and conditions as described below (also available in Julou_2022_GCS_series.csv). A list of data files is provided in Julou_2022_GCS_GL_Preproc_fileList.txt.


subdirectory,condition
20180712,switch_glycerol_TMG20
20181008,switch_lactulose_TMG20
20181009,switch_lactulose_TMG20
20181024,switch_lactulose
20210122_S0,glu2uM
20210122_S1,lac002
20210122_S2,lac002_glu2uM
20210122_S3,lac002_glu4uM
20210122_S4,lac002_glu8uM
20210122_S5,lac002_glu16uM
20210122_S6,lac002_glu32uM
20210122_S7,lac002_glu002
20210305_S0,glu2uM
20210305_S1,lac002
20210305_S2,lac002_glu2uM
20210305_S3,lac002_glu4uM
20210305_S4,lac002_glu8uM
20210305_S5,lac002_glu16uM
20210305_S6,lac002_glu32uM
20210305_S7,lac002_glu002
20210504_S0,lac002_glu16uM
20210504_S1,lac002_glu32uM
20210504_S2,lac002_glu64uM
20210504_S3,lac002_glu128uM
20210504_S4,glu2uM+IPTG
20210504_S5,glu8uM+IPTG
20210504_S6,glu32uM+IPTG
20210506_S2,lac002_glu64uM
20210506_S3,lac002_glu128uM
20210506_S4,glu2uM+IPTG
20210506_S5,glu8uM+IPTG
20210506_S6,glu32uM+IPTG
20210506_S7,glu128uM+IPTG
20210513_S0,glu2uM
20210513_S1,glu4uM
20210513_S2,glu8uM
20210513_S3,glu16uM
20210513_S4,glu32uM
20210513_S5,glu64uM
20210513_S6,glu2uM+IPTG
20210513_S7,glu128uM+IPTG
20210708_S0,glu8uM
20210708_S1,glu32uM
20210708_S2,glu128uM
20210708_S4,glu002
20210708_S5,M9zero
20210708_S6,glu02
20210708_S7,lac002_glu128uM
DOI: 10.5281/zenodo.7429484
title: Single-cell data of "Growth rate controls the sensitivity of gene regulatory circuits"

description: Single-cell data of microfluidic experiments reported in the article Growth rate controls the sensitivity of gene regulatory circuits.


The corresponding image dataset, together with raw export files from the image analysis software MoMA, is available at https://doi.org/10.5281/zenodo.6684959. 


Two series of experiments of have been conducted, where bacterial growth and lac operon expression are monitored using phase contrast and epifluorescence microscopy (measuring a translational LacZ-GFP fusion):



	
"Transient growth arrest": Escherichia coli cells are exposed to M9 minimal medium with glycerol, and then to media containing TMG inducer either with glycerol or with lactulose (data from 4 independent experiments).
	
"Concentration-dependent glucose/lactose preference": Escherichia coli cells pre-grown in M9 minimal medium with 0.2% glucose are grown in mother machine microfluidic chips in one of the following conditions (data from 6 independent experiments with up to 8 conditions per experiments):
	

		
lactose 0.02% with variable glucose concentration (2µM to 128µM)
		
variable glucose concentration (2µM to 128µM)
		
variable glucose concentration (2µM to 128µM) with 200µM IPTG.
	
	



Each subdirectory corresponds to a given date and conditions as described below (also available in Julou_2022_GCS_series.csv). A list of data files is provided in Julou_2022_GCS_GL_Preproc_fileList.txt.


subdirectory,condition
20180712,switch_glycerol_TMG20
20181008,switch_lactulose_TMG20
20181009,switch_lactulose_TMG20
20181024,switch_lactulose
20210122_S0,glu2uM
20210122_S1,lac002
20210122_S2,lac002_glu2uM
20210122_S3,lac002_glu4uM
20210122_S4,lac002_glu8uM
20210122_S5,lac002_glu16uM
20210122_S6,lac002_glu32uM
20210122_S7,lac002_glu002
20210305_S0,glu2uM
20210305_S1,lac002
20210305_S2,lac002_glu2uM
20210305_S3,lac002_glu4uM
20210305_S4,lac002_glu8uM
20210305_S5,lac002_glu16uM
20210305_S6,lac002_glu32uM
20210305_S7,lac002_glu002
20210504_S0,lac002_glu16uM
20210504_S1,lac002_glu32uM
20210504_S2,lac002_glu64uM
20210504_S3,lac002_glu128uM
20210504_S4,glu2uM+IPTG
20210504_S5,glu8uM+IPTG
20210504_S6,glu32uM+IPTG
20210506_S2,lac002_glu64uM
20210506_S3,lac002_glu128uM
20210506_S4,glu2uM+IPTG
20210506_S5,glu8uM+IPTG
20210506_S6,glu32uM+IPTG
20210506_S7,glu128uM+IPTG
20210513_S0,glu2uM
20210513_S1,glu4uM
20210513_S2,glu8uM
20210513_S3,glu16uM
20210513_S4,glu32uM
20210513_S5,glu64uM
20210513_S6,glu2uM+IPTG
20210513_S7,glu128uM+IPTG
20210708_S0,glu8uM
20210708_S1,glu32uM
20210708_S2,glu128uM
20210708_S4,glu002
20210708_S5,M9zero
20210708_S6,glu02
20210708_S7,lac002_glu128uM
DOI: 10.15468/dl.dmpr64
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Centaurium littorale subsp. uliginosum (Waldst. & Kit.) Rothm. ex Melderis, Centaurium littorale subsp. uliginosum (Waldst. & Kit.) Rothm. ex Melderis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Geometry POLYGON((16.26355 48.15358,16.48014 48.15358,16.48014 48.27418,16.26355 48.27418,16.26355 48.15358))",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to January",
 "Month is less than or equal to September"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019249-250127130748423/datasets/export for details.
DOI: 10.17630/4e71de79-c96b-4564-8c0b-4cb3b2799949
title: Investigation of transport regimes in restricted geometries of ultra-pure natural heterostructures (Thesis data)

description: Data files for the figures of my thesis. Files consist of 'X' and 'Y' columns, in case of multiple graphs on the plot it is 'X1' 'Y1' 'X2' 'Y2'...
DOI: 10.15468/dl.895nh5
title: Occurrence Download

description: A dataset containing 36836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhinella marina (Linnaeus, 1758)"
 ]
}

 The dataset includes 36836 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019248-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13682761
title: Physically meaningful chiral descriptors for modelling chromatographic enantioseparations

description: For example for the Excel file with the title "Borate_chiral_explicit_biased_charged_uncharged.xlsx":

- In the first tab, titled "Exp_water_acn_biased_charge", you can find the biased chiral descriptors for the molecules in their pH 9 state, simulated in explicit solvent. 

- In the second tab, titled "Exp_water_acn_biased_uncharged", you can find the biased chiral descriptors for the molecules in their uncharged state, simulated in explicit solvent. 

- The third tab, titled "Chiral log alfaRS charge uncharge", includes the responses (log αRS and αRS), along with the retention times and retention factors (k) for each molecule. In addition, this tab contains the descriptors from both the first and the second tab.

- The fourth and the fifth tabs present the experimental and predicted responses (log αRS in the fourth tab and αRS in the fifth tab) for the models that were built. 

The structure of the other files follows a similar pattern: the first tabs provide the descriptor values, followed by a tab containing the modelling information (response(s) and various descriptor sets) and finally, a tab is included with the predicted response values.
DOI: 10.5281/zenodo.14831437
title: Google Scholar Emails Dataset
DOI: 10.5281/zenodo.14831438
title: Google Scholar Emails Dataset
DOI: 10.6084/m9.figshare.28367963
title: dati FAIR: J. Agric. Food Chem. 2020, 68, 13353 − 13366 (https://dx.doi.org/10.1021/acs.jafc.0c00879)

description: Metabolome of 11 single-cultivar, single-vintage Italian red wines (Aglianico, Cannonau, Corvina, Montepulciano, Nebbiolo, Nerello, Primitivo, Raboso, Sagrantino, Sangiovese, and Teroldego) from 12 regions across Italy, each one produced in their terroirs under ad hoc legal frameworks to guarantee their quality and origin.
DOI: 10.6084/m9.figshare.28367963.v1
title: dati FAIR: J. Agric. Food Chem. 2020, 68, 13353 − 13366 (https://dx.doi.org/10.1021/acs.jafc.0c00879)

description: Metabolome of 11 single-cultivar, single-vintage Italian red wines (Aglianico, Cannonau, Corvina, Montepulciano, Nebbiolo, Nerello, Primitivo, Raboso, Sagrantino, Sangiovese, and Teroldego) from 12 regions across Italy, each one produced in their terroirs under ad hoc legal frameworks to guarantee their quality and origin.
DOI: 10.5281/zenodo.14785269
title: Empirical Fault Patterns for Mutation Testing (Artifact)

description: This is the research artifact accompanying our submission "Empirical Fault Patterns for Mutation Testing". In this work we investigate how mutation testing results are affected if empirical fault patterns are used as mutation operators instead of the typical operators implemented in most mutation testing frameworks. The artifact contains the raw data we collected in a study with Defects4J and the data analysis script for processing that raw data. It also contains our implementation for the operators to be used with Coccinelle4J and the mutants we generated in our study.
DOI: 10.5281/zenodo.11103137
title: Dataset of "Thermal Truncation of Heptamethine Cyanine Dyes"

description: Cyanine dyes are a class of organic, usually cationic molecules containing two nitrogen centers linked through conjugated polymethine chains. Unlike phototruncation, the thermal truncation (chain-shortening) reaction is a phenomenon that has rarely been described for these important fluorophores. Here, we present a systematic investigation of the truncation of heptamethine cyanines (Cy7) to pentamethine (Cy5) and trimethine (Cy3) cyanines via homogeneous, acid-base catalyzed nucleophilic exchange reactions. We demonstrate how different substituents at the C3′ and C4′ positions of the chain and different heterocyclic end groups, the presence of different bases, nucleophiles and oxygen, solvent properties, and temperature affect the truncation process. The mechanism of chain shortening, studied by various analytical and spectroscopic techniques, was verified by extensive ab initio calculation, demonstrating the need to model catalytic reactions by highly correlated wavefunction-based methods. We show that entropic effects control the course of this process. The study provides a critical insight into the reactivity of the polyene chains of cyanines and offers new approaches to the synthesis of meso-substituted symmetrical and unsymmetrical pentamethine cyanines from Cy7 derivatives.
DOI: 10.5281/zenodo.11103138
title: Dataset of "Thermal Truncation of Heptamethine Cyanine Dyes"

description: Cyanine dyes are a class of organic, usually cationic molecules containing two nitrogen centers linked through conjugated polymethine chains. Unlike phototruncation, the thermal truncation (chain-shortening) reaction is a phenomenon that has rarely been described for these important fluorophores. Here, we present a systematic investigation of the truncation of heptamethine cyanines (Cy7) to pentamethine (Cy5) and trimethine (Cy3) cyanines via homogeneous, acid-base catalyzed nucleophilic exchange reactions. We demonstrate how different substituents at the C3′ and C4′ positions of the chain and different heterocyclic end groups, the presence of different bases, nucleophiles and oxygen, solvent properties, and temperature affect the truncation process. The mechanism of chain shortening, studied by various analytical and spectroscopic techniques, was verified by extensive ab initio calculation, demonstrating the need to model catalytic reactions by highly correlated wavefunction-based methods. We show that entropic effects control the course of this process. The study provides a critical insight into the reactivity of the polyene chains of cyanines and offers new approaches to the synthesis of meso-substituted symmetrical and unsymmetrical pentamethine cyanines from Cy7 derivatives.
DOI: 10.15468/dl.kay35d
title: Occurrence Download

description: A dataset containing 86034 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "GadmGid is CHN.25_1"
 ]
}

 The dataset includes 86034 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019250-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwy3xn
title: Occurrence Download

description: A dataset containing 1427 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Myiarchus semirufus P.L.Sclater & Salvin, 1878"
 ]
}

 The dataset includes 1427 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028446-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2019-10.1857557/2365564
title: Data for EMSL Project 48666 from October 2019
DOI: 10.15468/dl.d64rrn
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iniistius trivittatus (Randall & Cornish, 2000)"
 ]
}

 The dataset includes 112 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050332-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.