cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.742qf
title: Data from: New Trepostomate bryozoans from the upper Ordovician of Morocco and the temperature influence on zooid size

description: New Upper Ordovician trepostomate bryozoans from the eastern Anti-Atlas of
 Morocco have been identified. They have been collected from the lower and
 intermediate units of the Khabt-el-Hajar Formation, late Katian in age,
 representing, respectively, bryozoan-pelmatozoan meadows with
 siliciclastic input, degraded by wave activity in a mid-ramp setting, and
 outer-ramp environments with marly substrates. Ten species of the genera
 Cyphotrypa, Calloporella, Diplotrypa, Parvohallopora, Dekayia, and
 Aostipora are described. Of them, three species are new: Cyphotrypa
 regularis Jiménez-Sánchez, Parvohallopora cystata Jiménez-Sánchez, and
 Aostipora elongata Jiménez-Sánchez. Univariate statistical analyses of the
 sub-polar Moroccan species, in addition to other congeneric species of
 high, middle, and low latitudes, corroborate that for the trepostomate
 bryozoan the temperature of the ambient water was a primary control on
 zooecium size variations. Nevertheless, other environmental factors,
 besides temperature, must have also influenced significantly the zooid
 size, at least in low latitudes. Our data also give further support for
 considering the zooecium wall thickness as a limiting factor for the zooid
 size increment with latitude in the trepostomates.
description: Morphometric analysis of
 the studied sampleSupplemental file 1
 .xlsxAutozooecial diameter in
 the studied sampleSupplemental file
 2.xlsx
DOI: 10.5061/dryad.hd5c7
title: Data from: Morphometric discrimination of two allozymically diagnosed sibling species of the Echinorhynchus gadi Zoega in Muller complex (Acanthocephala) in the North Sea.

description: Allozyme electrophoresis was used to detect biological species of the E.
 gadi complex from gadids from the northern North Sea. A fixed difference
 at one of nine enzyme loci surveyed confirmed the existence of two
 reproductively isolated, sympatric species. Mixed infections of two E.
 gadi spp. (termed A and B) were observed in Gadus morhua and Pollachius
 virens. E. gadi sp. B was also found in Melanogrammus aeglefinus and
 Merlangius merlangus. The presence of gravid females of E. gadi spp. A and
 B in the same host species, P. virens, and sometimes in the same host
 individual, indicates that neither differential host-specificity nor
 seasonal differences in mating time are responsible for their reproductive
 isolation. Morphological study of probosces from electrophoretically
 identified specimens demonstrated that the two species can be
 discriminated in graphical and cluster analyses of hook morphometrics. E.
 gadi sp. I (of Vainola etal., 1994) and E. gadi sp. A are probably
 conspecific.
description: Allozyme
 dataAllelic variation scored
 from nine presumptive loci. In addition to genotypes, host and
 geographical locality data are provided for each
 acanthocephalan.allozyme_data.csvEgg and acanthor dimensions for Echinorhynchus gadi spp.Egg and acanthor dimensions for Echinorhynchus gadi spp. A, B & I. All dimensions in micrometres.eggs.csvMorphometric and meristic data for female Echinorhynchus gadi spp.Morphometric and meristic data for female Echinorhynchus gadi spp. A, B & I. All measurements in micrometres.female_morphometrics_meristics.csvMorphometric and meristic data for male Echinorhynchus gadi spp.Morphometric and meristic data for male Echinorhynchus gadi spp. A & B. All measurements in micrometres.male_morphometrics_meristics.csvHook measurements for Echinorhynchus gadi spp.Hook measurements for female and male Echinorhynchus spp.hook_measurements.csv
DOI: 10.5061/dryad.9r8v0
title: Data from: Testing social learning of anti-predator responses in juvenile jackdaws: the importance of accounting for levels of agitation

description: Social learning is often assumed to help young animals respond
 appropriately to potential threats in the environment. We brought wild,
 juvenile jackdaws briefly into captivity to test whether short exposures
 to conspecific vocalisations are sufficient to promote anti-predator
 learning. Individuals were presented with one of two models – a stuffed
 fox representing a genuine threat, or a toy elephant simulating a novel
 predator. Following an initial baseline presentation, juveniles were
 trained by pairing models with either adult mobbing calls, indicating
 danger, or contact calls suggesting no danger. In a final test phase with
 no playbacks, birds appeared to have habituated to the elephant,
 regardless of training, but responses to the fox remained high throughout,
 suggesting juveniles already recognised it as a predator before the
 experiment began. Training with mobbing calls did seem to generate
 elevated escape responses, but this was likely to be a carry-over effect
 of the playback in the previous trial. Overall, we found little evidence
 for social learning. Instead, individuals’ responses were mainly driven by
 their level of agitation immediately preceding each presentation. These
 results highlight the importance of accounting for agitation in studies of
 anti-predator learning, and whenever animals are held in captivity for
 short periods.
description: Babar Experiment Data -
 RSOSData from experiment
 performed using wild birds held temporarily in a captive setting before
 release. Details of column contents can be found on the second sheet of
 the document.Babar code -
 RSOSCode used to analyse the
 data and generate the results presented in this
 experiment
DOI: 10.5061/dryad.1594
title: Data from: Allometric scaling of metabolism, growth, and activity in whole colonies of the seed harvester ant, Pogonomyrmex californicus

description: The negative allometric scaling of metabolic rate with body size is among
 the most striking patterns in biology. We investigated whether this
 pattern extends to physically independent eusocial systems by measuring
 the metabolic rates of whole functioning colonies of the seed‐harvester
 ant Pogonomyrmex californicus. These intraspecific scaling data were
 compared to the predictions of an additive model developed to estimate
 collective metabolic rates. Contrary to the prediction of the additive
 model, colony metabolic rate allometry resembled the pattern commonly
 observed interspecifically for individual organisms, scaling with colony
 mass0.75. Among the same‐aged colonies, net growth rate varied by up to
 sevenfold, with larger colonies exhibiting higher net growth efficiency
 than smaller colonies. Isolated worker groups exhibited isometric
 metabolic rate scaling, suggesting that the social environment of the
 colony is critical to regulating individual patterns of work output.
 Within the social environment, individual worker locomotor velocities
 exhibited power‐law distributions that scaled with colony size so that
 larger colonies exhibited a greater disparity between active and inactive
 ants than did smaller colonies. These results demonstrate that behavioral
 organization within colonies may have a major influence on colony‐level
 metabolism and in generating intraspecific variation in growth
 trajectories.
description: WatersetalAMNAT-DATA.xlsExcel workbook containing three spreadsheets: 1) Additive model calculations, 2) Allometric data generated by the additive models, and 3) the metabolic rate data empirically collected by our colonies. Note that the first spreadsheet contains a complete summary of the colony census demographic data collected at the time of metabolic rate measurement.
DOI: 10.15468/dl.udwkj9
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tzeltalia amphitricha",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 18 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001017-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.dk412
title: Data from: Predicting the effect of urban noise on the active space of avian vocal signals

description: Urbanization changes the physical environment of non-human species, but
 also markedly changes their acoustic environment. Urban noise interferes
 with acoustic communication in a range of animals including birds, with
 potentially profound impacts on fitness. However, a mechanistic theory to
 predict which species of birds will be most affected by urban noise is
 lacking. We develop a mathematical model to predict the decrease in the
 active space of avian vocal signals when moving from quiet forest habitats
 to noisy urban habitats, and find that the magnitude of the decrease is
 largely a function of signal frequency. However, this relationship is not
 monotonic. A meta-regression of observed increases in the frequency of
 birdsong in urban noise supports the model's predictions for signals
 with frequencies between 1.5 and 4 kHz. Using the results of the
 meta-regression and the model described above, we show that the expected
 gain in active space following observed frequency shifts is up to 12%, and
 greatest for birds with signals at the lower end of this frequency range.
 Our generally-applicable model, along with three predictions regarding the
 behavioral and population-level responses of birds to urban noise,
 represents an important step towards a theory of acoustic communication in
 urban habitats.
description: Predicted decline in
 communication distance in 6 species of birds; Data used in meta-regression
 of frequency shifts in urban noiseData collated from the
 published literature, file created using MS Word. Column headings
 described in data file. Sources: Hu & Cardoso (2009) Behavioral
 Ecology 20:1268-1273; Brackenbury (1979) Journal of Experimental Biology
 78:163-166; Calder (1990) Ecology 71:1810-1816; Wood & Yezerinac
 (2006) The Auk 123:650-659; Parris & Schneider (2009) Ecology and
 Society 14(1):29; Fernandez-Juricic et al. (2005) Urban Habitats 3:49-69;
 Gross et al. (2010) American Naturalist 176:456-464; Potvin et al. (2011)
 Proceedings of the Royal Society B 278:2464-2469; Mockford & Marshall
 (2009) Proceedings of the Royal Society B 276:2979-2985; Slabbekoorn &
 Peet (2003) Nature 424:267; Slabbekoorn & den Boer-Visser (2006)
 Current Biology 16:2326-2331.Parris&McCarthy_Tables.doc
DOI: 10.5061/dryad.7919
title: Data from: Sweet drinks are made of this: conservation genetics of an endemic palm species from the Dominican Republic

description: Pseudophoenix ekmanii is a threatened palm species endemic to the
 Dominican Republic. Sap from trees is extracted to make a local drink;
 once they are tapped the individual usually dies. Plants are also
 illegally harvested for the nursery trade, and destroyed by poachers
 hunting the endemic and threatened Hispaniolan parrot. We used seven DNA
 microsatellite markers to assist land managers in developing conservation
 strategies for this palm. We sampled four populations along the known
 distribution range of this species (three populations from the mainland
 and one from the small island of Isla Beata), for a total sample of n=104.
 We found strong evidence for genetic drift, inbreeding, and moderate gene
 flow (i.e., all populations had at least four loci that were not in Hardy
 Weinberg Equilibrium, at least nine loci-pairs were in Linkage
 Disequilibrium, the pair-wise FST values ranged from 0.069 to 0.266, and
 had positive FIS values). Data supported an isolation-by-distance model,
 and cluster analyses based on genetic distances resolved two groups that
 match a north-south split. The population from Isla Beata had the lowest
 levels of genetic diversity and was the only one in which we found pairs
 of individuals with identical shared multi-locus genotypes.
description: Pseudo-ekmanii-data-setExcel file formated for Genalex
DOI: 10.5061/dryad.1jq1313
title: Data from: Untargeted metabolomics profiles delineate metabolic alterations in mouse plasma during lung carcinoma development using UPLC-QTOF/MS in MSE mode

description: In this work, an untargeted metabolomic method based on
 ultra-high-performance liquid chromatography-quadrupole time-of-flight
 mass spectrometry (UPLC-QTOF/MS) in MSE (E represents collision energy)
 mode was exploited to determine the dynamic metabolic alterations in the
 plasma of male C57BL/6 mice during the onset and development of lung
 carcinoma. Plasma samples were collected from control and model mice (male
 C57BL/6 mice experimentally inoculated with the Lewis lung carcinoma
 cells) at 7 and 14 days post-inoculation (DPI). As a result, 15
 dysregulated metabolites, including cholesterol sulphate, tiglylcarnitine,
 1-palmitoylglycerophosphoinositol, 2-stearoylglycerophosphoinositol,
 stearoylcarnitine, PC(20:2(11Z,14Z)/16:0), PC(22:4(7Z,10Z,13Z,16Z)/14:0),
 PC(22:5(7Z,10Z,13Z,16Z,19Z)/14:0), PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/16:0),
 12,20-Dioxo-leukotriene B4, sphingosine 1-phosphate(d19:1-P),
 sphingomyelin(d18:0/16:1(9Z)), lysoPC(16:0), lysoPC(18:0) and
 lysoPC(20:4(5Z,8Z,11Z,14Z)), were identified in the plasma of model mice
 with xenografts at both 7 and 14 DPI. All the altered metabolites
 associated with the onset and development of lung carcinoma were involved
 in the metabolism of glycerophospholipid, fatty acid, sphingolipid and
 arachidonic acid. The feasible utility of these endogenous biomarkers as
 potential diagnostic indicators was validated through receiver operating
 characteristic curve analysis. Collectively, these findings provide a
 systematic view of metabolic changes linked to the onset and development
 of lung carcinoma.
description: Untargeted metabolomics
 profiles delineate metabolic alterations in mouse plasma during lung
 carcinoma development1. The sarcoma weights
 (A) and volumes (B) of the control, 7 DPI and 14 DPI group; 2. The signal
 intensities of the dysregulated metabolites in ESI+ and ESI- mode (7 DPI
 VS Control); 3. The signal intensities of the dysregulated metabolites in
 ESI+ and ESI- mode (14 DPI VS 7 DPI).Untargeted metabolomics
 profiles.zip
DOI: 10.5061/dryad.80j0r
title: Data from: Candelariella clarkii and Lecidea hoganii: two lichen species new to science from White Rocks Open Space, City of Boulder, Colorado

description: Two new species are described from vouchers collected as part of an
 intensive lichen inventory of Fox Hills Sandstone outcrops in an open
 space preserve within the city limits of Boulder, Colorado. Candelariella
 clarkii is characterized by its cryptolecanorine apothecia, chartreuse
 areolate thallus, and 8-spored asci. Lecidea hoganii is a member of the L.
 auriculata morphological group characterized by a thick white chalky
 thallus, pink pigments in the hymenium, and absence of secondary
 compounds. We provide IUCN conservation assessments for both new species,
 which should be considered critically endangered. The discovery of two
 species new to science in a relatively densely populated region of North
 America illustrates the ecological relevance of small of patches of native
 habitat, which are certain to become even more important in the future.
description: Candellariella_5ITS DNA alignment for Candelariella5_Lecidea_mtSSU_alignedmtSSU DNA alignment for Lecidea analysis
DOI: 10.5061/dryad.gv1jj11
title: Data from: Contemporary factors influencing genetic diversity in the Alaska humpback whitefish Coregonus clupeaformis complex

description: Thirteen microsatellite loci were used to address three hypotheses
 regarding genetic diversity in the humpback whitefish Coregonus
 clupeaformis complex in Alaska. The test results provided further insight
 into the factors influencing C. clupeaformis complex population structure
 and level of genetic variation. First, themicrosatellite data did not
 provide evidence of two spatially distinct Beringian and Eurasian refugial
 groups as revealed in previous phylogeographic analyses
 ofmitochondrialDNAvari- ation. Rather, the population structure inferred
 from the microsatellite variation appears to reveal the influence of
 factors on amore recent time scale, including gene flowamong the refugial
 groups and iso- lation of some anadromous and freshwater resident
 populations. Second, anadromous C. clupeaformis complex collections
 exhibited higher intra-population genetic diversity than freshwater
 resident col- lections. This outcome is consistent with previous meta
 analyses suggesting that freshwater resident populations probably have
 smaller historical effective population sizes and less conspecific gene
 flow because the habitat tends to be smaller and supports fewer and
 smaller populations. Finally, the analy- sis of contemporary immigration
 rates was consistent with, but did not provide statistical support for,
 the hypothesis that gene flow among anadromous C. clupeaformis complex
 populations along coastal Alaska is influenced by the Alaska Coastal
 Current. Further studies are needed to evaluate gene flow among coastal
 Alaska C. clupeaformis complex populations. Published
description: jfb13568-sup-0001-TableS1Genotype data from 13 microsatellite loci used to evaluate genetic divergence and diversity in 11 humpback whitefish Coregonus clupeaformis complex collections from Alaska. The genotype data is formatted for use in the population genetic analysis software FSTAT.
DOI: 10.5061/dryad.n82dm
title: Data from: Do stressful conditions make adaptation difficult? Guppies in the oil-polluted environments of southern Trinidad

description: The ability of populations to rapidly adapt to new environments will
 determine their future in an increasingly human-modified world. Although
 meta-analyses do frequently uncover signatures of local adaptation, they
 also reveal many exceptions. We suggest that particular constraints on
 local adaptation might arise when organisms are exposed to novel
 stressors, such as anthropogenic pollution. To inform this possibility, we
 studied the extent to which guppies (Poecilia reticulata) show local
 adaptation to oil pollution in southern Trinidad. Neutral genetic markers
 revealed that paired populations in oil-polluted versus not-polluted
 habitats diverged independently in two different watersheds. Morphometrics
 revealed some divergence (particularly in head shape) between these
 environments, some of which was parallel between rivers. Reciprocal
 transplant experiments in nature, however, found little evidence of local
 adaptation based on survival and growth. Moreover, subsequent laboratory
 experiments showed that the two populations from oil-polluted sites showed
 only weak local adaptation even when compared to guppies from oil-free
 northern Trinidad. We conclude that guppies show little local adaptation
 to oil pollution, which might result from the challenges associated with
 adaptation to particularly stressful environments. It might also reflect
 genetic drift owing to small population sizes and/or high gene flow
 between environments.
description: Rolshausen.etal.Guppy.oil.EvolApplThe archive contains raw data from: 1. reciprocal transplant experiments; 2. geometric morphometrics; 3. microsatellite genotypes
DOI: 10.5061/dryad.8f901
title: Data from: Ultraviolet B radiation alters movement and thermal selection of zebrafish (Danio rerio)

description: Temperature and ultraviolet B (UV-B) interact in causing cellular damage
 and impairing locomotor performance. Here, we test the hypothesis that
 movement and thermal selection of zebrafish (Danio rerio) change in the
 presence of UV-B, and in particular, that fish which were chronically
 exposed to UV-B avoid high and low temperature extremes to maximize
 activities of antioxidant enzymes. Fish chronically (two to three weeks)
 exposed to UV-B had increased reactive oxygen species (ROS)-induced damage
 to proteins and membranes, and reduced swimming performance at high (more
 than 26°C) temperatures. In an open field arena with a thermal gradient,
 chronically exposed fish avoided high and low temperature extremes
 compared with control fish. Additionally, both control and chronically
 exposed fish showed slower voluntary swimming speeds in the presence of
 UV-B. We suggest that in the presence of UV-B fish may reduce muscular
 activity to minimize intrinsic ROS production. Our data show that the
 interaction between UV-B and temperature determines movement and
 microhabitat selection of fish, which is therefore of ecological
 importance particularly in anthropogenically modified environments.
description: RSBL-2016-0258 data for
 DRYADAll data presented in
 this ms. Details are given in the "metadata" sheet in the Excel
 file.RSBL-2016-0258R1 data for
 DRYAD.xlsx
DOI: 10.5061/dryad.r9f11
title: Data from: Constraints imposed by a natural landscape override offspring fitness effects to shape oviposition decisions in wild forked fungus beetles

description: Oviposition site decisions often maximize offspring fitness, but costs
 constraining choice can cause females to oviposit in poor developmental
 environments. It is unclear whether these constraints cumulatively
 outweigh offspring fitness to determine oviposition decisions in wild
 populations. Understanding how constraints shape oviposition in natural
 landscapes is a critical step toward revealing how maternal behavior
 influences fundamental phenomena like the evolution of specialization and
 the use of "sink" environments. Here, we applied genetic
 capture-recapture to reconstruct the oviposition decisions of individual
 females in a natural metapopulation of a beetle (Bolitotherus cornutus)
 that oviposits on three fungus species. We measured larval fitness-related
 traits (mass, development time, survival) on each fungus, and compared the
 oviposition preferences of females in laboratory versus field tests.
 Larval fitness differed substantially among fungi, and females preferred a
 high-quality (high larval fitness) fungus in laboratory trials. However,
 females frequently laid eggs on the lowest-quality fungus in the wild.
 They preferred high-quality fungi when moving between oviposition sites,
 but this preference disappeared as the distance between sites increased
 and was inconsistent between study plots. Our results suggest constraints
 on oviposition preferences in natural landscapes are sufficiently large to
 drive oviposition in poor developmental environments even when offspring
 fitness consequences are severe.
description: Figures1-4CSV files containing the data for the analyses presented in Figures 1-4.Figure 5CSV files containing the data used in the genetic capture-recapture analysis presented in Figure 5. MARKinput.zip contains the input files for the genetic capture-recapture analyses, and Figure5.csv contains the model-averaged transition probabilities for both study plots.Figure5.zip
DOI: 10.5061/dryad.5rc47
title: Data from: The fitness costs of antibiotic resistance mutations

description: Antibiotic resistance is increasing in pathogenic microbial populations
 and is thus a major threat to public health. The fate of a resistance
 mutation in pathogen populations is determined in part by its fitness.
 Mutations that suffer little or no fitness cost are more likely to persist
 in the absence of antibiotic treatment. In this review, we performed a
 meta-analysis to investigate the fitness costs associated with single
 mutational events that confer resistance. Generally, these mutations were
 costly, although several drug classes and species of bacteria on average
 did not show a cost. Further investigations into the rate and fitness
 values of compensatory mutations that alleviate the costs of resistance
 will help us to better understand both the emergence and management of
 antibiotic resistance in clinical settings.
description: Competitive fitness
 costs of antibiotic resistance mutationsData file contains
 measures of competitive fitness values associated with a given antibiotic
 resistance mutation. Other metrics of the resistance mutation are
 included, such as strain, antibiotic, technique, MIC if available, etc.
 See read me file for coding for technique to derive and the relevant
 citations.costR.csv