cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25596589.v1
title: The complete chloroplast genome sequence of <i>Zanthoxylum ailanthoides</i> Sieb. et. Zucc (Rutaceae): an important medicinal plant

description: <i>Zanthoxylum ailanthoides</i> is a deciduous tree, with important medicinal and economic values. The complete chloroplast genome sequence of <i>Z. ailanthoides</i> was assembled and the phylogenetic relationship to other species was inferred in this study. The chloroplast genome is 157,209 bp in length, including two inverted repeats of 26,408 bp, a large single-copy of 86,099 bp and a small single copy of 18,294 bp. Moreover, the chloroplast genome contains 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the chloroplast genome is 38.4%. The phylogenetic analysis indicated that <i>Z. ailanthoides</i> was grouped with a clade containing the species of <i>Z. multijugum</i>, <i>Z. calcicola</i>, <i>Z. oxyphyllum</i>, <i>Z. stenophyllum</i>, and the genus was closely related to <i>Phellodendron</i>. This study contributes to a better understanding of the phylogenetic relationships among <i>Zanthoxylum</i> species.
DOI: 10.15468/dl.aa3sje
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leymus ×sphacelatus Peschkova"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008774-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25549407
title: The complete mitochondrial genome of <i>Phymateus saxosus</i> (Coquerel, 1861) (Orthoptera: Pyrgomorphidae) and phylogenetic analysis

description: <i>Phymateus saxosus</i> is a member of the family Pyrgomorphidae, Orthoptera. In this study, the complete mitochondrial genome (mitogenome) of <i>P. saxosus</i> was determined and analyzed. Assembled mitogenome sequence of <i>P. saxosus</i> is 15,672 bp in size, containing 37 genes and a control region. The gene orientation and arrangement of <i>P. saxosus</i> are identical to other species in the Pyrgomorphoidea family. The overall nucleotide composition is as follows: A (43.6%) &gt; T (30.2%) &gt; C (16.1%) &gt; G (10.1%). Phylogenetic analysis suggested that <i>P. saxosus</i> forms sister groups with <i>P. morbillosus</i>, and the monophyly of Pyrgomorphidae is supported. In general, this study provided valuable genetic information for <i>P. saxosus</i> and explored the phylogenetic relationships in the family Pyrgomorphidae.
DOI: 10.6084/m9.figshare.25549407.v1
title: The complete mitochondrial genome of <i>Phymateus saxosus</i> (Coquerel, 1861) (Orthoptera: Pyrgomorphidae) and phylogenetic analysis

description: <i>Phymateus saxosus</i> is a member of the family Pyrgomorphidae, Orthoptera. In this study, the complete mitochondrial genome (mitogenome) of <i>P. saxosus</i> was determined and analyzed. Assembled mitogenome sequence of <i>P. saxosus</i> is 15,672 bp in size, containing 37 genes and a control region. The gene orientation and arrangement of <i>P. saxosus</i> are identical to other species in the Pyrgomorphoidea family. The overall nucleotide composition is as follows: A (43.6%) &gt; T (30.2%) &gt; C (16.1%) &gt; G (10.1%). Phylogenetic analysis suggested that <i>P. saxosus</i> forms sister groups with <i>P. morbillosus</i>, and the monophyly of Pyrgomorphidae is supported. In general, this study provided valuable genetic information for <i>P. saxosus</i> and explored the phylogenetic relationships in the family Pyrgomorphidae.
DOI: 10.15468/dl.4qcw2y
title: Occurrence Download

description: A dataset listing the 6 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aechmea magdalenae (André) André ex Baker"
 ]
}

 The dataset's 6 records were derived from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0249478-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25549404
title: Characterization of the complete chloroplast genome sequence of <i>Camellia tetracocca</i> (Theaceae)

description: <i>Camellia tetracocca</i> H.T. Chang 1981 is an important wild relative of cultivated tea plants. Its leaves are widely used by local people to make tea, showing great economic and breeding values. We here report the complete chloroplast genome of <i>C. tetracocca</i> using Illumina sequencing technology. The complete chloroplast genome of <i>C. tetracocca</i> is 157,026 bp in length, and structurally contains a pair of inverted repeat regions (IRa and IRb, 26,052 bp) separated by a large single-copy region (LSC, 86,669 bp) and a small single-copy region (SSC, 18,253 bp). It is composed of 131 predicted genes, including 86 protein-coding genes, 37 transfer RNA genes, and eight ribosomal RNA genes. The overall GC content is 37.31%. Phylogenetic analysis among four <i>Camellia</i> species and 11 other close species reveals a close relationship between <i>C. tetracocca</i> and <i>C. gymnogyna</i>.
DOI: 10.6084/m9.figshare.25549404.v1
title: Characterization of the complete chloroplast genome sequence of <i>Camellia tetracocca</i> (Theaceae)

description: <i>Camellia tetracocca</i> H.T. Chang 1981 is an important wild relative of cultivated tea plants. Its leaves are widely used by local people to make tea, showing great economic and breeding values. We here report the complete chloroplast genome of <i>C. tetracocca</i> using Illumina sequencing technology. The complete chloroplast genome of <i>C. tetracocca</i> is 157,026 bp in length, and structurally contains a pair of inverted repeat regions (IRa and IRb, 26,052 bp) separated by a large single-copy region (LSC, 86,669 bp) and a small single-copy region (SSC, 18,253 bp). It is composed of 131 predicted genes, including 86 protein-coding genes, 37 transfer RNA genes, and eight ribosomal RNA genes. The overall GC content is 37.31%. Phylogenetic analysis among four <i>Camellia</i> species and 11 other close species reveals a close relationship between <i>C. tetracocca</i> and <i>C. gymnogyna</i>.
DOI: 10.6084/m9.figshare.25551157
title: Complete chloroplast genome of <i>Angelica hirsutiflora</i> Liu et al. 1961 (Apiaceae)

description: <i>Angelica hirsutiflora</i> Liu et al.1961, is a perennial herb in the Apiaceae family that is endemic to Taiwan. In this study, the complete circular chloroplast genome of <i>A. hirsutiflora</i> was reconstructed and annotated using Illumina sequencing. The size of the chloroplast genome is 154,266 bp, consisting of two inverted repeats (IRs, 25,075 bp) separated by a large single-copy region (LSC, 86,569 bp) and a small single-copy region (SSC, 17,547 bp). The GC content of the chloroplast genome is 37.6%. There are 114 different genes in the chloroplast genome of <i>A. hirsutiflora</i>, including 80 protein-coding genes, 30 tRNA genes and four rRNA genes. A maximum-likelihood phylogenetic analysis showed that <i>A. hirsutiflora</i> forms a distinct clade, and separated from other species within the genus <i>Angelica</i>. This study provided insights into the evolutionary relationships among different species of <i>Angelica</i>.
DOI: 10.6084/m9.figshare.25551157.v1
title: Complete chloroplast genome of <i>Angelica hirsutiflora</i> Liu et al. 1961 (Apiaceae)

description: <i>Angelica hirsutiflora</i> Liu et al.1961, is a perennial herb in the Apiaceae family that is endemic to Taiwan. In this study, the complete circular chloroplast genome of <i>A. hirsutiflora</i> was reconstructed and annotated using Illumina sequencing. The size of the chloroplast genome is 154,266 bp, consisting of two inverted repeats (IRs, 25,075 bp) separated by a large single-copy region (LSC, 86,569 bp) and a small single-copy region (SSC, 17,547 bp). The GC content of the chloroplast genome is 37.6%. There are 114 different genes in the chloroplast genome of <i>A. hirsutiflora</i>, including 80 protein-coding genes, 30 tRNA genes and four rRNA genes. A maximum-likelihood phylogenetic analysis showed that <i>A. hirsutiflora</i> forms a distinct clade, and separated from other species within the genus <i>Angelica</i>. This study provided insights into the evolutionary relationships among different species of <i>Angelica</i>.
DOI: 10.6084/m9.figshare.25603856
title: Characterization of the complete chloroplast genome sequence of <i>Lycium qingshuiheense</i> (Solanaceae)

description: <i>Lycium qingshuiheense</i> is a typical drought and salt-alkali-tolerant plant, which has been added to the new species of <i>Lycium</i> in recent years. Here, we first sequenced the complete chloroplast genome of <i>L. qingshuiheense</i> to investigate its evolutionary relationship within the family Solanaceae. Results suggested that the circular complete chloroplast genome of <i>L. qingshuiheense</i> was 154,945 bp in length, including a large single-copy (LSC) of 85,930 bp, a small single-copy (SSC) of 18,203 bp, and two inverted repeats (IRs) of 25,406 bp. The GC content accounts for 37.90% and annotated 131 genes, including 86 protein-coding genes, eight rRNA genes, and 37 tRNA genes. A neighbor-joining phylogenetic tree revealed that <i>L. qingshuiheense</i> was a sister species to <i>L. ruthenicum.</i> Our study provides a new insight into the systematic evolution of <i>Lycium</i> in the Solanaceae family.
DOI: 10.6084/m9.figshare.25603856.v1
title: Characterization of the complete chloroplast genome sequence of <i>Lycium qingshuiheense</i> (Solanaceae)

description: <i>Lycium qingshuiheense</i> is a typical drought and salt-alkali-tolerant plant, which has been added to the new species of <i>Lycium</i> in recent years. Here, we first sequenced the complete chloroplast genome of <i>L. qingshuiheense</i> to investigate its evolutionary relationship within the family Solanaceae. Results suggested that the circular complete chloroplast genome of <i>L. qingshuiheense</i> was 154,945 bp in length, including a large single-copy (LSC) of 85,930 bp, a small single-copy (SSC) of 18,203 bp, and two inverted repeats (IRs) of 25,406 bp. The GC content accounts for 37.90% and annotated 131 genes, including 86 protein-coding genes, eight rRNA genes, and 37 tRNA genes. A neighbor-joining phylogenetic tree revealed that <i>L. qingshuiheense</i> was a sister species to <i>L. ruthenicum.</i> Our study provides a new insight into the systematic evolution of <i>Lycium</i> in the Solanaceae family.
DOI: 10.15468/dl.tjnvnb
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentianella gibbsii (Petrie) T.N.Ho & S.W.Liu"
 ]
}

 The dataset includes 22 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226325-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25662952
title: Characterization of the complete chloroplast genome sequence of <i>Agave durangensis</i> (Asparagales: Asparagaceae: Agavoideae)

description: <i>Agave durangensis</i> commonly known as agave cenizo, is an endemic <i>Agave</i> species in Mexico used for mescal production, yet its taxonomic delimitation is still controversial. This study aimed to enhance taxonomic clarity by characterizing its chloroplast genome. Chloroplast DNA was isolated from 2-year-old <i>A. durangensis</i> leaves. The complete chloroplast genome size was 156,441 bp, comprising a large single-copy region (LSC), a pair of inverted repeat regions (IR), and a small single-copy region (SSC). Annotation revealed 87 protein-coding genes, 38 tRNAs, and 8 rRNAs, with notable gene inversions. Phylogenetic analysis suggests, <i>A. durangensis</i> forms a separate lineage within the <i>Agave</i> genus.
DOI: 10.6084/m9.figshare.25662952.v1
title: Characterization of the complete chloroplast genome sequence of <i>Agave durangensis</i> (Asparagales: Asparagaceae: Agavoideae)

description: <i>Agave durangensis</i> commonly known as agave cenizo, is an endemic <i>Agave</i> species in Mexico used for mescal production, yet its taxonomic delimitation is still controversial. This study aimed to enhance taxonomic clarity by characterizing its chloroplast genome. Chloroplast DNA was isolated from 2-year-old <i>A. durangensis</i> leaves. The complete chloroplast genome size was 156,441 bp, comprising a large single-copy region (LSC), a pair of inverted repeat regions (IR), and a small single-copy region (SSC). Annotation revealed 87 protein-coding genes, 38 tRNAs, and 8 rRNAs, with notable gene inversions. Phylogenetic analysis suggests, <i>A. durangensis</i> forms a separate lineage within the <i>Agave</i> genus.
DOI: 10.6084/m9.figshare.25679797
title: The complete chloroplast genome of <i>Pandanus amaryllifolius</i> Roxb. ex Lindl. (Pandanaceae) and its phylogenetic relationship

description: <i>Pandanus amaryllifolius</i> of Pandanaceae, a plant native to Southeast Asia, has been domesticated for its health benefits and aromatic leaves. It is also used for phytoremediation and soil rehabilitation. However, genetic studies of this species are limited. This study aims to expand its genomic information by assembling and characterizing the complete chloroplast genome of <i>P. amaryllifolius</i>. The chloroplast genome, which was 157,839 bp long, contains a total of 133 genes, including 87 protein-coding (CDS), 38 tRNA, and eight rRNA genes. The overall G/C content was 37.7%. A phylogenetic analysis using 79 shared unique CDS revealed a monophyletic relationship in Pandanales. Based on the limited sampling size, <i>Pandanus amaryllifolius</i> was the first to diverge in Pandanaceae. The genomic data will be useful for future phylogenetic and evolutionary studies of Pandanaceae.
DOI: 10.6084/m9.figshare.25679797.v1
title: The complete chloroplast genome of <i>Pandanus amaryllifolius</i> Roxb. ex Lindl. (Pandanaceae) and its phylogenetic relationship

description: <i>Pandanus amaryllifolius</i> of Pandanaceae, a plant native to Southeast Asia, has been domesticated for its health benefits and aromatic leaves. It is also used for phytoremediation and soil rehabilitation. However, genetic studies of this species are limited. This study aims to expand its genomic information by assembling and characterizing the complete chloroplast genome of <i>P. amaryllifolius</i>. The chloroplast genome, which was 157,839 bp long, contains a total of 133 genes, including 87 protein-coding (CDS), 38 tRNA, and eight rRNA genes. The overall G/C content was 37.7%. A phylogenetic analysis using 79 shared unique CDS revealed a monophyletic relationship in Pandanales. Based on the limited sampling size, <i>Pandanus amaryllifolius</i> was the first to diverge in Pandanaceae. The genomic data will be useful for future phylogenetic and evolutionary studies of Pandanaceae.
DOI: 10.6084/m9.figshare.25679803
title: The complete chloroplast genome assembly of <i>Commelina caroliniana</i> Walter (Commelinaceae)

description: We sequenced and published the chloroplast genome of <i>Commelina caroliniana</i> Walter, which was previously misidentified as <i>C. diffusa</i> owing to their morphological similarities until 1989. The genome of <i>C. caroliniana</i> is 160,857 bp long [large single copy region: 88,064 bp; a small single copy region: 18,549 bp; two inverted repeat regions: 27,122 bp] and has a GC content of 35.7%. The genome comprises 133 genes, including 87 coding sequences (CDSs), 38 tRNAs, and eight rRNAs. The phylogenetic relationship between <i>C. caroliniana</i> and related species was analyzed using the maximum likelihood method based on the 79 CDSs of the chloroplast genome. Phylogenetic analysis revealed that <i>C. caroliniana</i> is closely related to <i>C. communis</i>. Our findings will contribute to studies on species identification and phylogenetic and evolutionary research. These results enhance our understanding of the <i>Commelina</i> genus.
DOI: 10.6084/m9.figshare.25679803.v1
title: The complete chloroplast genome assembly of <i>Commelina caroliniana</i> Walter (Commelinaceae)

description: We sequenced and published the chloroplast genome of <i>Commelina caroliniana</i> Walter, which was previously misidentified as <i>C. diffusa</i> owing to their morphological similarities until 1989. The genome of <i>C. caroliniana</i> is 160,857 bp long [large single copy region: 88,064 bp; a small single copy region: 18,549 bp; two inverted repeat regions: 27,122 bp] and has a GC content of 35.7%. The genome comprises 133 genes, including 87 coding sequences (CDSs), 38 tRNAs, and eight rRNAs. The phylogenetic relationship between <i>C. caroliniana</i> and related species was analyzed using the maximum likelihood method based on the 79 CDSs of the chloroplast genome. Phylogenetic analysis revealed that <i>C. caroliniana</i> is closely related to <i>C. communis</i>. Our findings will contribute to studies on species identification and phylogenetic and evolutionary research. These results enhance our understanding of the <i>Commelina</i> genus.
DOI: 10.6084/m9.figshare.25549458
title: The complete chloroplast genome sequence and phylogenetic analysis of <i>Strobilanthes dalzielii</i> (W.W.Sm.) Benoist 1935 (Acanthaceae)

description: <i>Strobilanthes dalzielii</i> of Acanthaceae is an herb species with potentially extensive applications for its pharmaceutical and ornamental values. Due to taxonomic complications and limited genetic information, the structural characteristics, and phylogenetic relationships of the <i>S. dalzielii</i> chloroplast genome were assembled and characterized here for the first time. The complete chloroplast genome of <i>S. dalzielii</i> was 144,580 bp in length. The genome is quadripartite in structure and consists of a large single-copy region (92,137 bp) and a small single-copy region (17,669 bp), which are separated by a pair of inverted repeats (each 17,387 bp). A total of 125 genes were annotated, including 80 protein-coding, 37 transfer RNA, and eight ribosomal RNA genes. The overall GC content was 36.4%. Phylogenetic analysis based on the complete chloroplast genome sequence of 21 taxa within the tribe Ruellieae of Acanthaceae using the maximum likelihood and Bayesian inference methods revealed that <i>Strobilanthes</i> diverged after <i>Ruellia</i>; <i>S. dalzielii</i> is closely related to <i>S. tonkinensis</i>. The genomic data obtained from this study will serve as valuable information to the species delimitation and genetic classification of <i>Strobilanthes</i>.
DOI: 10.6084/m9.figshare.25549458.v1
title: The complete chloroplast genome sequence and phylogenetic analysis of <i>Strobilanthes dalzielii</i> (W.W.Sm.) Benoist 1935 (Acanthaceae)

description: <i>Strobilanthes dalzielii</i> of Acanthaceae is an herb species with potentially extensive applications for its pharmaceutical and ornamental values. Due to taxonomic complications and limited genetic information, the structural characteristics, and phylogenetic relationships of the <i>S. dalzielii</i> chloroplast genome were assembled and characterized here for the first time. The complete chloroplast genome of <i>S. dalzielii</i> was 144,580 bp in length. The genome is quadripartite in structure and consists of a large single-copy region (92,137 bp) and a small single-copy region (17,669 bp), which are separated by a pair of inverted repeats (each 17,387 bp). A total of 125 genes were annotated, including 80 protein-coding, 37 transfer RNA, and eight ribosomal RNA genes. The overall GC content was 36.4%. Phylogenetic analysis based on the complete chloroplast genome sequence of 21 taxa within the tribe Ruellieae of Acanthaceae using the maximum likelihood and Bayesian inference methods revealed that <i>Strobilanthes</i> diverged after <i>Ruellia</i>; <i>S. dalzielii</i> is closely related to <i>S. tonkinensis</i>. The genomic data obtained from this study will serve as valuable information to the species delimitation and genetic classification of <i>Strobilanthes</i>.
DOI: 10.15468/dl.72y27w
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Yorkshire Wildlife Trust Shoresearch",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 246 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226301-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25533542
title: The complete chloroplast genome of the medicinally important plant <i>Plumbago zeylanica</i> L. (plumbaginaceae) and phylogenetic analysis

description: <i>Plumbago zeylanica</i> L. 1753 is a medicinally-important herb in family Plumbaginaceae. In this study, we assembled and reported the complete chloroplast genome of <i>P. zeylanica</i>. The plastome of <i>P. zeylanica</i> was 169,178 bp, including a large single-copy region of 92,135 bp, a small single-copy region (SSC) of 13,455 bp and a pair of inverted repeat regions (IRs) of 31,794 bp. It contained 124 genes, including 79 protein-coding genes, 37 tRNA genes and eight rRNA genes. Phylogenetic analysis showed that <i>P. zeylanica</i> formed a close relationship with <i>P. auriculata</i> in <i>Plumbago.</i> The first complete chloroplast genome report of <i>P. zeylanica</i> providing an opportunity to explore the genetic diversity, and would be also helpful in the species identification and conservation.
DOI: 10.15468/dl.2mu9j8
title: Occurrence Download

description: A dataset containing 1921 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annelida",
 "DatasetKey is Monitoring data from the federal state Saxony (Germany)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 1921 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0213260-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ze9ez2
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hesperantha flexuosa Klatt"
 ]
}

 The dataset includes 32 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241355-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7yxzmm
title: Occurrence Download

description: A dataset containing 1316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is one of (Canada, United States of America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ovis dalli Nelson, 1884"
 ]
}

 The dataset includes 1316 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263099-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apa9ax
title: Occurrence Download

description: A dataset containing 663 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentianella grisebachii (Hook.fil.) T.N.Ho"
 ]
}

 The dataset includes 663 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226352-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.