cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id69608.1
title: StrainInfo SI-ID 69608.1

description: StrainInfo dataset 69608 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69457.1
title: StrainInfo SI-ID 69457.1

description: StrainInfo dataset 69457 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69458.1
title: StrainInfo SI-ID 69458.1

description: StrainInfo dataset 69458 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.3bnw3e
title: Occurrence Download

description: A dataset containing 4059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tithonia rotundifolia (Mill.) S.F.Blake)"
 ]
}

 The dataset includes 4059 records from 215 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079903-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id69459.1
title: StrainInfo SI-ID 69459.1

description: StrainInfo dataset 69459 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69460.1
title: StrainInfo SI-ID 69460.1

description: StrainInfo dataset 69460 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69526.1
title: StrainInfo SI-ID 69526.1

description: StrainInfo dataset 69526 about a strain of Nocardia pseudobrasiliensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69527.1
title: StrainInfo SI-ID 69527.1

description: StrainInfo dataset 69527 about a strain of Corynebacterium sundsvallense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69528.1
title: StrainInfo SI-ID 69528.1

description: StrainInfo dataset 69528 about a strain of Nocardia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69529.1
title: StrainInfo SI-ID 69529.1

description: StrainInfo dataset 69529 about a strain of Nocardia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69609.1
title: StrainInfo SI-ID 69609.1

description: StrainInfo dataset 69609 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69610.1
title: StrainInfo SI-ID 69610.1

description: StrainInfo dataset 69610 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69611.1
title: StrainInfo SI-ID 69611.1

description: StrainInfo dataset 69611 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69612.1
title: StrainInfo SI-ID 69612.1

description: StrainInfo dataset 69612 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69461.1
title: StrainInfo SI-ID 69461.1

description: StrainInfo dataset 69461 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69462.1
title: StrainInfo SI-ID 69462.1

description: StrainInfo dataset 69462 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69463.1
title: StrainInfo SI-ID 69463.1

description: StrainInfo dataset 69463 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69530.1
title: StrainInfo SI-ID 69530.1

description: StrainInfo dataset 69530 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69531.1
title: StrainInfo SI-ID 69531.1

description: StrainInfo dataset 69531 about a strain of Brucella anthropi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69532.1
title: StrainInfo SI-ID 69532.1

description: StrainInfo dataset 69532 about a strain of Brucella anthropi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69613.1
title: StrainInfo SI-ID 69613.1

description: StrainInfo dataset 69613 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69614.1
title: StrainInfo SI-ID 69614.1

description: StrainInfo dataset 69614 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69615.1
title: StrainInfo SI-ID 69615.1

description: StrainInfo dataset 69615 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69616.1
title: StrainInfo SI-ID 69616.1

description: StrainInfo dataset 69616 about a strain of Pasteurella multocida subsp. multocida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69464.1
title: StrainInfo SI-ID 69464.1

description: StrainInfo dataset 69464 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69465.1
title: StrainInfo SI-ID 69465.1

description: StrainInfo dataset 69465 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69466.1
title: StrainInfo SI-ID 69466.1

description: StrainInfo dataset 69466 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69467.1
title: StrainInfo SI-ID 69467.1

description: StrainInfo dataset 69467 about a strain of Neisseria meningitidis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id69533.1
title: StrainInfo SI-ID 69533.1

description: StrainInfo dataset 69533 about a strain of Brucella anthropi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.6084/m9.figshare.25310998
title: <i>Riemerella anatipestifer</i> UvrC is required for iron utilization, biofilm formation and virulence

description: UvrC is a subunit of excinuclease ABC, which mediates nucleotide excision repair (NER) in bacteria. Our previous studies showed that transposon Tn4531 insertion in the UvrC encoding gene Riean_1413 results in reduced biofilm formation by <i>Riemerella anatipestifer</i> strain CH3 and attenuates virulence of strain YZb1. In this study, whether <i>R. anatipestifer</i> UvrC has some biological functions other than NER was investigated. Firstly, the <i>uvrC</i> of <i>R. anatipestifer</i> strain Yb2 was in-frame deleted by homologous recombination, generating deletion mutant ΔuvrC, and its complemented strain cΔuvrC was constructed based on <i>Escherichia coli</i> – <i>R. anatipestifer</i> shuttle plasmid pRES. Compared to the wild-type (WT) <i>R. anatipestifer</i> strain Yb2, <i>uvrC</i> deleted mutant ΔuvrC significantly reduced biofilm formation, tolerance to H<sub>2</sub>O<sub>2</sub>- and HOCl-induced oxidative stress, iron utilization, and adhesion to and invasion of duck embryonic hepatocytes, but not its growth curve and proteolytic activity. In addition, animal experiments showed that the LD<sub>50</sub> value of ΔuvrC in ducklings was about 13-fold higher than that of the WT, and the bacterial loads in ΔuvrC infected ducklings were significantly lower than those in Yb2-infected ducklings, indicating <i>uvrC</i> deletion in <i>R. anatipestifer</i> attenuated virulence. Taken together, the results of this study indicate that <i>R. anatipestifer</i> UvrC is required for iron utilization, biofilm formation, oxidative stress tolerance and virulence of strain Yb2, demonstrating multiple functions of UvrC. <b>RESEARCH HIGHLIGHTS</b>Deletion of <i>uvrC</i> in <i>R. anatipestfer</i> Yb2 significantly reduced its biofilm formation.<i>uvrC</i> deletion led to reduced tolerance to H<sub>2</sub>O<sub>2</sub>- and HOCl-induced oxidative stress.The iron utilization of <i>uvrC</i> deleted mutant was significantly reduced.The <i>uvrC</i> deletion in <i>R. anatipestifer</i> Yb2 attenuated its virulence. Deletion of <i>uvrC</i> in <i>R. anatipestfer</i> Yb2 significantly reduced its biofilm formation. <i>uvrC</i> deletion led to reduced tolerance to H<sub>2</sub>O<sub>2</sub>- and HOCl-induced oxidative stress. The iron utilization of <i>uvrC</i> deleted mutant was significantly reduced. The <i>uvrC</i> deletion in <i>R. anatipestifer</i> Yb2 attenuated its virulence.
DOI: 10.6084/m9.figshare.25310998.v1
title: <i>Riemerella anatipestifer</i> UvrC is required for iron utilization, biofilm formation and virulence

description: UvrC is a subunit of excinuclease ABC, which mediates nucleotide excision repair (NER) in bacteria. Our previous studies showed that transposon Tn4531 insertion in the UvrC encoding gene Riean_1413 results in reduced biofilm formation by <i>Riemerella anatipestifer</i> strain CH3 and attenuates virulence of strain YZb1. In this study, whether <i>R. anatipestifer</i> UvrC has some biological functions other than NER was investigated. Firstly, the <i>uvrC</i> of <i>R. anatipestifer</i> strain Yb2 was in-frame deleted by homologous recombination, generating deletion mutant ΔuvrC, and its complemented strain cΔuvrC was constructed based on <i>Escherichia coli</i> – <i>R. anatipestifer</i> shuttle plasmid pRES. Compared to the wild-type (WT) <i>R. anatipestifer</i> strain Yb2, <i>uvrC</i> deleted mutant ΔuvrC significantly reduced biofilm formation, tolerance to H<sub>2</sub>O<sub>2</sub>- and HOCl-induced oxidative stress, iron utilization, and adhesion to and invasion of duck embryonic hepatocytes, but not its growth curve and proteolytic activity. In addition, animal experiments showed that the LD<sub>50</sub> value of ΔuvrC in ducklings was about 13-fold higher than that of the WT, and the bacterial loads in ΔuvrC infected ducklings were significantly lower than those in Yb2-infected ducklings, indicating <i>uvrC</i> deletion in <i>R. anatipestifer</i> attenuated virulence. Taken together, the results of this study indicate that <i>R. anatipestifer</i> UvrC is required for iron utilization, biofilm formation, oxidative stress tolerance and virulence of strain Yb2, demonstrating multiple functions of UvrC. <b>RESEARCH HIGHLIGHTS</b>Deletion of <i>uvrC</i> in <i>R. anatipestfer</i> Yb2 significantly reduced its biofilm formation.<i>uvrC</i> deletion led to reduced tolerance to H<sub>2</sub>O<sub>2</sub>- and HOCl-induced oxidative stress.The iron utilization of <i>uvrC</i> deleted mutant was significantly reduced.The <i>uvrC</i> deletion in <i>R. anatipestifer</i> Yb2 attenuated its virulence. Deletion of <i>uvrC</i> in <i>R. anatipestfer</i> Yb2 significantly reduced its biofilm formation. <i>uvrC</i> deletion led to reduced tolerance to H<sub>2</sub>O<sub>2</sub>- and HOCl-induced oxidative stress. The iron utilization of <i>uvrC</i> deleted mutant was significantly reduced. The <i>uvrC</i> deletion in <i>R. anatipestifer</i> Yb2 attenuated its virulence.
DOI: 10.6084/m9.figshare.25367742.v1
title: Case reports involving coinfection with <i>Avibacterium paragallinarum</i> and <i>Ornithobacterium rhinotracheale</i> in broiler chickens and <i>Avibacterium endocarditis</i> in broiler breeding hens in Poland

description: The study describes three clinical cases of infection with <i>Avibacterium</i> spp.. In case no. 1, respiratory clinical signs and high mortality (0.7–4.2% daily; total 21.2%) in Ross 308 broiler chickens were shown to be caused by coinfection with sequence type 9 of <i>O. rhinotracheale</i> presumptive serotype A and <i>A. paragallinarum</i> presumptive serotype B. The identical (pulsed-field gel electrophoresis) restriction pattern (pulsotype) of seven <i>A. paragallinarum</i> isolates indicated that infectious coryza in broilers was caused by the same clone. In cases 2 and 3, sudden increased deaths in Ross 308 broiler breeders (especially males) with lesions in the endocardium (valvular or mural endocarditis) were shown to be caused by <i>A. endocarditis</i>. Among nine antibiotics tested, florfenicol was the only antibiotic to which all <i>A. paragallinarum</i> and <i>O. rhinotracheale</i> isolates were susceptible. Out of the eight antibiotics tested, 11 <i>A. endocarditis</i> isolates from both clinical cases of infective endocarditis were susceptible to penicillin, amoxicillin, doxycycline and florfenicol. The <i>A. endocarditis</i> isolates tested in both clinical cases had different PFGE patterns (pulsotypes), but identical within a case. The causes of infectious coryza and infective endocarditis in the cases presented have not been determined. In the prevention of infectious diseases in large-scale livestock farming, it is very important to follow the rules of biosecurity.
DOI: 10.60712/si-id69534.1
title: StrainInfo SI-ID 69534.1

description: StrainInfo dataset 69534 about a strain of Brucella anthropi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.6084/m9.figshare.25310955
title: Novel lncRNA 803 related to Marek’s disease inhibits apoptosis of DF-1 cells

description: Marek’s disease (MD) is a neoplastic disease that significantly affects the poultry industry. Long non-coding RNAs (lncRNAs) are crucial regulatory factors in various biological processes, including tumourigenesis. However, the involvement of novel lncRNAs in the course of MD virus (MDV) infection is still underexplored. Here, we present the first comprehensive characterization of differentially expressed lncRNAs in chicken spleen at different stages of MDV infection. A series of differentially expressed lncRNAs was identified at each stage of MDV infection through screening. Notably, our investigation revealed a novel lncRNA, lncRNA 803, which exhibited significant differential expression at different stages of MDV infection and was likely to be associated with the p53 pathway. Further analyses demonstrated that the overexpression of lncRNA 803 positively regulated the expression of p53 and TP53BP1 in DF-1 cells, leading to the inhibition of apoptosis. This is the first study to focus on the lncRNA expression profiles in chicken spleens during MDV pathogenesis. Our findings highlight the potential role of the p53-related novel lncRNA 803 in MD pathogenesis and provide valuable insights for decoding the molecular mechanism of MD pathogenesis involving non-coding RNA. <b>RESEARCH HIGHLIGHTS</b>Differentially expressed lncRNAs in spleens of chickens infected with Marek’s disease virus at different stages were identified for the first time.The effects of novel lncRNA 803 on p53 pathway and apoptosis of DF-1 cells were reported for the first time. Differentially expressed lncRNAs in spleens of chickens infected with Marek’s disease virus at different stages were identified for the first time. The effects of novel lncRNA 803 on p53 pathway and apoptosis of DF-1 cells were reported for the first time.
DOI: 10.6084/m9.figshare.25310955.v1
title: Novel lncRNA 803 related to Marek’s disease inhibits apoptosis of DF-1 cells

description: Marek’s disease (MD) is a neoplastic disease that significantly affects the poultry industry. Long non-coding RNAs (lncRNAs) are crucial regulatory factors in various biological processes, including tumourigenesis. However, the involvement of novel lncRNAs in the course of MD virus (MDV) infection is still underexplored. Here, we present the first comprehensive characterization of differentially expressed lncRNAs in chicken spleen at different stages of MDV infection. A series of differentially expressed lncRNAs was identified at each stage of MDV infection through screening. Notably, our investigation revealed a novel lncRNA, lncRNA 803, which exhibited significant differential expression at different stages of MDV infection and was likely to be associated with the p53 pathway. Further analyses demonstrated that the overexpression of lncRNA 803 positively regulated the expression of p53 and TP53BP1 in DF-1 cells, leading to the inhibition of apoptosis. This is the first study to focus on the lncRNA expression profiles in chicken spleens during MDV pathogenesis. Our findings highlight the potential role of the p53-related novel lncRNA 803 in MD pathogenesis and provide valuable insights for decoding the molecular mechanism of MD pathogenesis involving non-coding RNA. <b>RESEARCH HIGHLIGHTS</b>Differentially expressed lncRNAs in spleens of chickens infected with Marek’s disease virus at different stages were identified for the first time.The effects of novel lncRNA 803 on p53 pathway and apoptosis of DF-1 cells were reported for the first time. Differentially expressed lncRNAs in spleens of chickens infected with Marek’s disease virus at different stages were identified for the first time. The effects of novel lncRNA 803 on p53 pathway and apoptosis of DF-1 cells were reported for the first time.
DOI: 10.6084/m9.figshare.25367742
title: Case reports involving coinfection with <i>Avibacterium paragallinarum</i> and <i>Ornithobacterium rhinotracheale</i> in broiler chickens and <i>Avibacterium endocarditis</i> in broiler breeding hens in Poland

description: The study describes three clinical cases of infection with <i>Avibacterium</i> spp.. In case no. 1, respiratory clinical signs and high mortality (0.7–4.2% daily; total 21.2%) in Ross 308 broiler chickens were shown to be caused by coinfection with sequence type 9 of <i>O. rhinotracheale</i> presumptive serotype A and <i>A. paragallinarum</i> presumptive serotype B. The identical (pulsed-field gel electrophoresis) restriction pattern (pulsotype) of seven <i>A. paragallinarum</i> isolates indicated that infectious coryza in broilers was caused by the same clone. In cases 2 and 3, sudden increased deaths in Ross 308 broiler breeders (especially males) with lesions in the endocardium (valvular or mural endocarditis) were shown to be caused by <i>A. endocarditis</i>. Among nine antibiotics tested, florfenicol was the only antibiotic to which all <i>A. paragallinarum</i> and <i>O. rhinotracheale</i> isolates were susceptible. Out of the eight antibiotics tested, 11 <i>A. endocarditis</i> isolates from both clinical cases of infective endocarditis were susceptible to penicillin, amoxicillin, doxycycline and florfenicol. The <i>A. endocarditis</i> isolates tested in both clinical cases had different PFGE patterns (pulsotypes), but identical within a case. The causes of infectious coryza and infective endocarditis in the cases presented have not been determined. In the prevention of infectious diseases in large-scale livestock farming, it is very important to follow the rules of biosecurity.
DOI: 10.60712/si-id69535.1
title: StrainInfo SI-ID 69535.1

description: StrainInfo dataset 69535 about a strain of Brucella anthropi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.