cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25442/hku.24303499.v1
title: Supporting data for 'Genome Mining of Uncharted Ribosomally Synthesized and Post-translationally Modified Peptides'

description: Ribosomally synthesized and post-translationally modified peptides (RiPPs) represent one of the largest but primarily underexplored natural product families in bacteria. The genetically encoded nature of RiPPs simplifies the prediction and prioritization of their biosynthetic gene clusters (BGCs). We report a small peptide and enzyme co-occurrence analysis workflow (SPECO), which allowed us to identify 32220 prospective rSAM-catalyzed RiPP BGCs from 161954 bacterial genomes and prioritize 25 families with new biosynthetic architectures or precursor patterns. We characterized three new enzymes that respectively catalyze cysteineglycine (BlaB), histidine-aliphatic side chain (ScaB), and tyrosine/histidine-arginine (VguB) cross-links. The cyclophane-forming enzyme ScaB exhibits broad substrate selectivity, allowing it to catalyze diverse triceptide formation. These results demonstrate the strength of the SPECO workflow in discovering new enzymes for peptide macrocyclization.P450-catalyzed RiPPs stand out as a unique but underexplored RiPP family. Here, we introduce a rule-based genome mining strategy that harnesses the intrinsic biosynthetic principles of RiPPs, including the co-occurrence, co-conservation, and interactions between precursors and P450s, successfully facilitating the identification of diverse P450 catalyzed RiPPs. Intensive BGC characterization revealed four new P450s, KstB, ScnB, MciB, and SgrB, that can respectively catalyze Trp-Trp-Tyr (one C-C and two C-N bonds), Tyr-Trp (C-C bond), Trp-Trp (C-N bond), and His-His (ether bond) crosslinks within three or four residues. KstB, ScnB, and MciB could accept non-native precursors, suggesting they could be promising starting templates for bioengineering to construct macrocycles. Our study highlights the potential of P450s in expanding the chemical diversity of strained macrocyclic peptides and enriching biocatalytic tools for peptide macrocyclization.
DOI: 10.25442/hku.24303499
title: Supporting data for 'Genome Mining of Uncharted Ribosomally Synthesized and Post-translationally Modified Peptides'

description: Ribosomally synthesized and post-translationally modified peptides (RiPPs) represent one of the largest but primarily underexplored natural product families in bacteria. The genetically encoded nature of RiPPs simplifies the prediction and prioritization of their biosynthetic gene clusters (BGCs). We report a small peptide and enzyme co-occurrence analysis workflow (SPECO), which allowed us to identify 32220 prospective rSAM-catalyzed RiPP BGCs from 161954 bacterial genomes and prioritize 25 families with new biosynthetic architectures or precursor patterns. We characterized three new enzymes that respectively catalyze cysteineglycine (BlaB), histidine-aliphatic side chain (ScaB), and tyrosine/histidine-arginine (VguB) cross-links. The cyclophane-forming enzyme ScaB exhibits broad substrate selectivity, allowing it to catalyze diverse triceptide formation. These results demonstrate the strength of the SPECO workflow in discovering new enzymes for peptide macrocyclization.P450-catalyzed RiPPs stand out as a unique but underexplored RiPP family. Here, we introduce a rule-based genome mining strategy that harnesses the intrinsic biosynthetic principles of RiPPs, including the co-occurrence, co-conservation, and interactions between precursors and P450s, successfully facilitating the identification of diverse P450 catalyzed RiPPs. Intensive BGC characterization revealed four new P450s, KstB, ScnB, MciB, and SgrB, that can respectively catalyze Trp-Trp-Tyr (one C-C and two C-N bonds), Tyr-Trp (C-C bond), Trp-Trp (C-N bond), and His-His (ether bond) crosslinks within three or four residues. KstB, ScnB, and MciB could accept non-native precursors, suggesting they could be promising starting templates for bioengineering to construct macrocycles. Our study highlights the potential of P450s in expanding the chemical diversity of strained macrocyclic peptides and enriching biocatalytic tools for peptide macrocyclization.
DOI: 10.25345/c5qn5zn8f
title: MassIVE MSV000093208 - GNPS massilia kyonggiensis OSMAC
title: This is an OSMAC study with Massilia kyonggiensis. pH was changed as well as the medium itself.
DOI: 10.25442/hku.23597208
title: Supporting data for “Occurrence and risk assessment of phthalic acid esters in drinking water system and investigation of developmental toxicity for early life stage zebrafish”

description: This zip file is about the detail information of Occurrence and risk assessment of phthalic acid esters in drinking water system and investigation of developmental toxicity for early life stage zebrafish. And the data submited are all related to the thesis, which mainly includes related supporting information.
DOI: 10.25442/hku.23597208.v1
title: Supporting data for “Occurrence and risk assessment of phthalic acid esters in drinking water system and investigation of developmental toxicity for early life stage zebrafish”

description: This zip file is about the detail information of Occurrence and risk assessment of phthalic acid esters in drinking water system and investigation of developmental toxicity for early life stage zebrafish. And the data submited are all related to the thesis, which mainly includes related supporting information.
DOI: 10.5281/zenodo.10046528
title: Analysis of Translation Techniques in the English Translations of Press Releases

description: This article is aimed at identifying, describing and explaining the types of translation techniques used in translating press releases from French into English published on the official websites of some ministries of Cameroon. These include the areas of public exams (Ministry of Public Service and Administrative Reforms), education (Ministries of Secondary and Higher Education), transport (Ministry of Sports), health (Ministry of Public Health), economy (Ministry of Finance), and public relations (Ministry of External Relations). The Descriptive Translation Studies (DTS) approach by Gideon Toury, the communication and skopos theories of translation were used to analyse 50 (fifty) excerpts of French press releases which have been translated into English. The findings show that the most used translation technique in the English translation of press releases was Modulation, followed by Amplification. However, 11 translation techniques are identified in the English translations of press releases.
DOI: 10.5281/zenodo.10046529
title: Analysis of Translation Techniques in the English Translations of Press Releases

description: This article is aimed at identifying, describing and explaining the types of translation techniques used in translating press releases from French into English published on the official websites of some ministries of Cameroon. These include the areas of public exams (Ministry of Public Service and Administrative Reforms), education (Ministries of Secondary and Higher Education), transport (Ministry of Sports), health (Ministry of Public Health), economy (Ministry of Finance), and public relations (Ministry of External Relations). The Descriptive Translation Studies (DTS) approach by Gideon Toury, the communication and skopos theories of translation were used to analyse 50 (fifty) excerpts of French press releases which have been translated into English. The findings show that the most used translation technique in the English translation of press releases was Modulation, followed by Amplification. However, 11 translation techniques are identified in the English translations of press releases.
DOI: 10.25442/hku.23275862
title: <em>Supporting data for "Quantum transport studies on graphene-transition metal dichalcogenides heterostructures"</em>

description: The experimental data used to plot the figures in the thesis and is saved in "mat" format. They were collected from low-temperature quantum transport measurements in samples with graphene-transition metal dichalcogenide structures.
DOI: 10.5281/zenodo.4288847
title: Data from: "Evidence of superfluidity in a dipolar supersolid from non-classical rotational inertia"

description: Here we store the data shown in the main text and in the supplementary material of the manuscritpt: "Evidence of superfluidity in a dipolar supersolid from non-classical rotational inertia", and the codes used to analyze the experimental data. All programs are Mathematica codes.
DOI: 10.5281/zenodo.4288848
title: Data from: "Evidence of superfluidity in a dipolar supersolid from non-classical rotational inertia"

description: Here we store the data shown in the main text and in the supplementary material of the manuscritpt: "Evidence of superfluidity in a dipolar supersolid from non-classical rotational inertia", and the codes used to analyze the experimental data. All programs are Mathematica codes.
DOI: 10.5281/zenodo.10046561
title: ИККИНЧИ ТАРТИБЛИ БИР ЖИНСЛИ БЎЛМАГАН СИНГУЛЯР КОЭФФИЦИЕНТЛИ БИР ОДДИЙ ДИФФЕРЕНЦИАЛ ТЕНГЛАМА УЧУН БОШЛАНҒИЧ МАСАЛА
DOI: 10.5281/zenodo.10046560
title: ИККИНЧИ ТАРТИБЛИ БИР ЖИНСЛИ БЎЛМАГАН СИНГУЛЯР КОЭФФИЦИЕНТЛИ БИР ОДДИЙ ДИФФЕРЕНЦИАЛ ТЕНГЛАМА УЧУН БОШЛАНҒИЧ МАСАЛА
DOI: 10.5281/zenodo.10046460
title: Dataset related to article "Impact of the Extremities Positioning on the Set-Up Reproducibility for the Total Marrow Irradiation Treatment"

description: Abstract
Total marrow (lymph node) irradiation (TMI/TMLI) delivery requires more time than standard radiotherapy treatments. The patient's extremities, through the joints, can experience large movements. The reproducibility of TMI/TMLI patients' extremities was evaluated to find the best positioning and reduce unwanted movements. Eighty TMI/TMLI patients were selected (2013-2022). During treatment, a cone-beam computed tomography (CBCT) was performed for each isocenter to reposition the patient. CBCT-CT pairs were evaluated considering: (i) online vector shift (OVS) that matched the two series; (ii) residual vector shift (RVS) to reposition the patient's extremities; (iii) qualitative agreement (range 1-5). Patients were subdivided into (i) arms either leaning on the frame or above the body; (ii) with or without a personal cushion for foot positioning. The Mann-Whitney test was considered (p < 0.05 significant). Six-hundred-twenty-nine CBCTs were analyzed. The median OVS was 4.0 mm, with only 1.6% of cases ranked < 3, and 24% of RVS > 10 mm. Arms leaning on the frame had significantly smaller RVS than above the body (median: 8.0 mm/6.0 mm, p < 0.05). Using a personal cushion for the feet significantly improved the RVS than without cushions (median: 8.5 mm/1.8 mm, p < 0.01). The role and experience of the radiotherapy team are fundamental to optimizing the TMI/TMLI patient setup.
DOI: 10.5281/zenodo.10046461
title: Dataset related to article "Impact of the Extremities Positioning on the Set-Up Reproducibility for the Total Marrow Irradiation Treatment"

description: Abstract
Total marrow (lymph node) irradiation (TMI/TMLI) delivery requires more time than standard radiotherapy treatments. The patient's extremities, through the joints, can experience large movements. The reproducibility of TMI/TMLI patients' extremities was evaluated to find the best positioning and reduce unwanted movements. Eighty TMI/TMLI patients were selected (2013-2022). During treatment, a cone-beam computed tomography (CBCT) was performed for each isocenter to reposition the patient. CBCT-CT pairs were evaluated considering: (i) online vector shift (OVS) that matched the two series; (ii) residual vector shift (RVS) to reposition the patient's extremities; (iii) qualitative agreement (range 1-5). Patients were subdivided into (i) arms either leaning on the frame or above the body; (ii) with or without a personal cushion for foot positioning. The Mann-Whitney test was considered (p < 0.05 significant). Six-hundred-twenty-nine CBCTs were analyzed. The median OVS was 4.0 mm, with only 1.6% of cases ranked < 3, and 24% of RVS > 10 mm. Arms leaning on the frame had significantly smaller RVS than above the body (median: 8.0 mm/6.0 mm, p < 0.05). Using a personal cushion for the feet significantly improved the RVS than without cushions (median: 8.5 mm/1.8 mm, p < 0.01). The role and experience of the radiotherapy team are fundamental to optimizing the TMI/TMLI patient setup.
DOI: 10.34740/kaggle/dsv/6808249
title: Egypt Gold Prices | Daily Updated
DOI: 10.25340/r4/0aiuyn
title: Related Data for: Growth, physiology and nutritional quality of C4 halophyte Portulaca oleracea L. grown aeroponically in different percentages of artificial seawater under different light-emitting diode spectral qualities

description: Edible halophyte Portulaca oleracea L., known as purslane, was grown in two percentages of artificial seawater (ASW) under two combined red (R) and blue (B) LED spectra. High salinity (40% ASW) negatively affected shoot productivity and leaf growth of purslane compared to those grown in 10% ASW. Photosynthetic pigment and total reduced nitrogen concentrations were significantly higher in purslane grown in 10% ASW than in 40% ASW. However, LED spectral quality did not markedly influence these parameters. Grown in 10% ASW under R/B 2.2, purslane had the highest maximum nitrate reductase activity, while those in 40% ASW under R/B 2.2 had the highest activation state. Under both light qualities, purslane had a sevenfold increase in proline concentration in 40% ASW than in 10% ASW. Total phenolic compounds’ concentration was the highest in 10% ASW under R/B 0.9, while there were no significant differences in the accumulation of total soluble sugars and ascorbic acids among all plants. Antioxidant enzymes activities were lower in 40% ASW under R/B 2.2 compared to the other conditions. In conclusion, salinity affected the yield, physiology and nutritional quality of purslane. The impacts of LED spectral quality on purslane were only reflected by certain physiological and nutritional parameters.
DOI: 10.6084/m9.figshare.24448516
title: canola_detection_dataset.zip

description: RGB images were obtained from three distinct datasets featuring canola in its early growth stage intermingled with weeds, including <b>T1 Miling</b> (T1_miling), <b>T2 Miling</b> (T2_Miling), and <b>York canola</b> (YC). These datasets were collected in Western Australia from distances ranging between 0.5 meters and 1.5 meters, captured at various angles. The images are processed as 500 by 500 pixel frames, comprising the core images along with their corresponding segmentation masks. Manual delineation of bounding boxes using the polygon tool was performed using the Make Sense annotation tool by Skalski, P. [GitHub: https://github.com/SkalskiP/make-sense/].For T1 and T2 Millet datasets, the images showcase canola plants in conjunction with rye grass, whereas the York canola dataset features images of canola alongside regrowth of blue lupin. Image collection involved the use of a smartphone for T1 and T2 and a Canon 600D DSLR camera for YC. If you are interested in the scripts for image processing and deep learning, they can be accessed at [GitHub: https://github.com/mikemcka/Canola_detection_dl/tree/main].In this repository you will find the RGB images and weed-crop-soil segmentation masks obtained using CIVE vegetation index.
DOI: 10.20375/0000-0011-0de6-c
title: DIF_KIIS_0723-clarification-q5-24.pdf
DOI: 10.20375/0000-0011-0de7-b
title: DIF_KIIS_0723-questionnaire.pdf
DOI: 10.20375/0000-0011-0de8-a
title: DIF_KIIS_0723.sav
DOI: 10.5281/zenodo.8333168
title: groundwater discharge distribution in the interface

description: This is the dataset for the manuccript  " New insight into groundwater discharge distribution in the surface water-land interface"
DOI: 10.20375/0000-0011-0de9-9
title: DIF_KIIS_0723-selected results(UKR).pdf
DOI: 10.5281/zenodo.8333167
title: groundwater discharge distribution in the interface

description: This is the dataset for the manuccript  " New insight into groundwater discharge distribution in the surface water-land interface"
DOI: 10.20375/0000-0011-0dea-8
title: DIF_KIIS_0723.xlsx
DOI: 10.34740/kaggle/dsv/6808277
title: Indian Food 16
DOI: 10.6084/m9.figshare.24448843
title: Organic carbon fractions in Chinese tidal wetland soils

description: we determined mineral-associated and particulate organic matter (MAOM and POM, respectively) in 99 surface soils and 40 soil cores collected from Chinese mangrove and saltmarsh habitats across a broad range of climates and accretion rates, and aimed to how climate and mineral accretion regulate the accumulation of MAOM and POM in tidal wetlands.
DOI: 10.5281/zenodo.10046611
title: List of NDD candidate genes - Insitute of Human Genetics in Leipzig, Germany

description: This dataset is a list a NDD candidate genes which was created by the Insitute of Human, University of Leipzig Medical Center in Leipzig, Germany on 27th of October 2023.
DOI: 10.5281/zenodo.6384363
title: List of NDD candidate genes - Insitute of Human Genetics in Leipzig, Germany

description: This dataset is a list a NDD candidate genes which was created by the Insitute of Human, University of Leipzig Medical Center in Leipzig, Germany on 25th of March 2022.
DOI: 10.5281/zenodo.7467094
title: List of NDD candidate genes - Insitute of Human Genetics in Leipzig, Germany

description: This dataset is a list a NDD candidate genes which was created by the Insitute of Human, University of Leipzig Medical Center in Leipzig, Germany on 21st of December 2022.
DOI: 10.15154/1527891
title: Distinct population and single-neuron selectivity for executive and episodic processing in human dorsal posterior cingulate

description: Posterior cingulate cortex (PCC) is an enigmatic region implicated in psychiatric and neurological disease, yet its role in cognition remains unclear. Human studies link PCC to episodic memory and default mode network (DMN), while findings from the non-human primate emphasize executive processes more associated with the cognitive control network (CCN) in humans. We hypothesized this difference reflects an important functional division between dorsal (executive) and ventral (episodic) PCC. To test this, we utilized human intracranial recordings of population and single unit activity targeting dorsal PCC during an alternated executive/episodic processing task. Dorsal PCC population responses were significantly enhanced for executive, compared to episodic, task conditions, consistent with the CCN. Single unit recordings, however, revealed four distinct functional types with unique executive (CCN) or episodic (DMN) response profiles. Our findings provide critical electrophysiological data from human PCC, bridging incongruent views within and across species, furthering our understanding of PCC function.
DOI: 10.15783/c7-5r6x-4b46
title: CRAWDAD dataset kth/campus (v. 2019-07-01)

description: The dataset contains records of authenticated user associations to the wireless network of the KTH Royal Institute of Technology in Stockholm. The dataset also includes scan results and mapping information of Wi-Fi networks, collected by means of war-walking at the university's two largest campuses.
description: Changelog: the initial version
DOI: 10.18712/nsd-nsd0669-v5
title: Level of living 2002 - Cross sectional study - Health

description: Statistics Norway's (SSB) Level of living - cross-section study (with rotating themes) have as it's primary objective to, over time, cover all important issues concerning the level of living. The topics have rotated in the following way: Working conditions in 1996, 2000, 2003, 2006 and 2009; Living conditions, community and leisure in 1997, 2001, 2004 og 2007;  Health in 1998, 2002, 2005 and 2008. 

The main topic of the Level of Living Survey 2003 is health. The issues that are covered includes:

- personal assessment of own health
- sickness, injuries and disabilities
- effects of sickness and injury
- use of health services
- smoking and exercise. 

Other themes that are touched upon are related to place of residence, household, work and social contact.
DOI: 10.24432/c5gp51
title: 3D Road Network (North Jutland, Denmark)
DOI: 10.48324/dandi.000237/0.230316.1655
title: Thermoregulatory Responses Hindbrain

description: Imaging in the hindbrain of nac -/-; Elavl3-H2B:GCaMP6s +/-; vglut2a-mCherry +/- larval zebrafish during random wave temperature stimulus presentation
DOI: 10.5281/zenodo.7737788
title: Processed data for "Model identification of neural encoding (MINE)" publication

description: This dataset contains mouse and zebrafish data processed by MINE. These datafiles were used to generate the publication figures for the mouse cortical dataset [m<em>usall.hdf5</em>] (Figure 5) and the zebrafish whole-brain [<em>main_analysis.hdf5</em>] (Figures 6 and 7) and reticulospinal datasets [r<em>s_analysis.hdf5</em>] (Figure 6). <em>Musall.hdf5 </em>contains reordered data from "Musall, S., Kaufman, M.T., Juavinett, A.L. <em>et al.</em> Single-trial neural dynamics are dominated by richly varied movements. <em>Nat Neurosci</em> <strong>22</strong>, 1677–1686 (2019)." The contents of each dataset are described in <em>DataContent_xxx.pdf</em>
description: Funding through NIH grant R01NS123887 and The Ohio State University Wexner Medical Center
DOI: 10.6084/m9.figshare.22591690
title: Supplementary Material for: Efficacy of Double Membrane Filtration Immunoadsorption in Severe C1q-Binding Donor-Specific Antibody-Positive Acute Humoral Kidney Allograft Rejection: A Case Series

description: <b><i>Introduction:</i></b> Acute antibody-mediated rejection (ABMR) is an important threat to renal allograft survival in the early transplant period and the major single cause of graft loss in the first postoperative year. Semi-selective immunoadsorption (IA) remains one of the commonly applied treatments in ABMR, reducing allo-reactive antibody load. Adding double filtration plasmapheresis (DFPP) to IA might enhance therapeutic efficacy by also addressing innate humoral effectors like complement factors. <b><i>Methods:</i></b> Four patients with ABMR were treated with DFPP + IA. Clinical, histological, and immunological data and adverse events were retrospectively collected. <b><i>Results:</i></b> Here we present four high-risk treatment-refractory ABMR cases with C1q-binding donor-specific antibodies and histology of humoral rejection under treatment with DFPP + IA. While the earlier cases (within the first year after transplantation) showed marked reduction in ABMR severity and improvement of kidney function, the later cases did not respond accordingly. Late ABMR patient 1 stabilized, whereas late ABMR patient 2 did not respond to treatment. <b><i>Conclusions:</i></b> Our data support the consideration of DFPP + IA as a rescue treatment option in early, severe, high-risk ABMR cases in which other treatments failed.
DOI: 10.6084/m9.figshare.24235087
title: Supplementary Material for: A case of Nocardia africana-related keratitis

description: Nocardia spp. is gram positive, aerobic, weakly acid-fast bacteria. Nocardia spp. keratitis is a rare ocular infection classically described following corneal injury or vegetative and soil exposure. However, keratitis caused by Nocardia africana had never been reported in the literature. We first reported a 70-year-old male who had a traumatic ocular injury to his left eye a month ago. With his complaint of left eye pain, reduced vision, and light sensitivity; the slit-lamp biomicroscopy showed the superficial multi-lobulated epithelial infiltration located at inferior cornea with positive fluorescein stain. Microscopic work up from corneal specimens demonstrated dry and chalky white colonies on blood agar and Lowenstein-Jensen media resembling Nocardia spp. The MALDI-TOF MS analyses using VITEK® MS exhibited Nocardia africana. The corneal lesion was treated with 2% amikacin topical eye drops and responded well. The careful history taking, precise clinical examinations and meticulous microscopic assessment were the cornerstone of diagnosis. Definite diagnosis and timely treatment were essential to prevention of ocular morbidity in Nocardia africana.