cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1330076713
title: High-Pressure X-Ray Thermal Diffuse Scattering Measurements on Polycrystalline Samples for Elastic Moduli Determination

description: The in-situ determination of a material’s elastic tensor at high pressure is of the highest importance for numerous fields of research, namely materials science, condensed matter physics, and geophysics where it is the cornerstone of seismology. As it stands, no method exists to obtain this information from highly heterogeneous and opaque samples. In this innovative proposal, we aim to combine two new, but well-established and highly synergistic approaches—X-ray thermal diffuse scattering (TDS) and single-crystal X-ray diffraction of polycrystals (SC-XRDp)—that together enable the full elastic tensor determination of high-pressure high-temperature in-situ synthesized polycrystals, irrespectively of their transparency or chemical heterogeneity. This novel methodology will be demonstrated on: bridgmanite (MgSiO3) and two phases of Fe2O3, the perovskite and post-perovskite phases.
DOI: 10.15151/esrf-es-1313216712
title: Structural Investigation of Ternary Polyhydrides of Light Elements

description: Light elements are the most promising in terms of increasing the critical temperature of superconductivity in polyhydrides. Study of promising hydrides of these elements, such as MgH6, CaMgH12, MgYH12, CaYH12 and Li2MgH16, is quite difficult due to the weak X-ray scattering cross section on light atoms, as well as due to small size of sample (20-30 μm) at pressure of 2 Mbar. Nevertheless, increasing the beam intensity at the ESRF and improving the equipment at the ID27 station open up opportunities for successful implementation of this joint project of the Jilin University and HPSTAR collaboration. Within this work, we plan to investigate the structure of ternary hydrides of light elements: magnesium-calcium, magnesium-yttrium, calcium-yttrium, lithium-magnesium, at pressures of 170-200 GPa using powder (single-crystal when possible) X-ray diffraction in high-pressure diamond anvil cells (DACs) combined with X-ray fluorescence to establish the exact composition of microsamples.
DOI: 10.15151/esrf-es-1410022536
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: This proposal clusters crystallography and bioSAXS projects at the EMBL Grenoble, IBS-CIBB and IAB. It combines groups working on different topics with a major focus on cell signaling proteins, drug discovery, long non-coding RNAs, nucleic acid-protein complexes, and host-pathogen interactions. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and biological small angle X-ray scattering and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (i.e. Soleil, Petra III, and Diamond). As Stephen Cusack (former head of EMBL Grenoble) will be retiring at the end of 2023 we propose to change the BAG responsible to Andrew McCarthy for this application round.
DOI: 10.15151/esrf-es-1417543278
title: Munich Crystallography BAG

description: The diverse groups of the Munich Crystallography BAG study a far range of subjects, reaching from structural aspects of fundamental cellular processes - such as RNA processing, protein folding and degradation, DNA repair, chromatin remodelling, enzymes - to the design of foldamers. The research groups are located at the LMU and TUM universities in Munich, at the Max-Planck-Institute of Biochemistry, Martinsried, and the Helmholtz Center, Neuherberg. Out-groups are located at the universities in Darmstadt and Ulm, Germany. The research groups use X-ray crystallography, single-particle cryo-EM, SAXS, NMR and HDX and XL-MS mass-spectrometry for structural studies.
DOI: 10.6084/m9.figshare.24221162
title: Systematic Review on Barriers to Access Opioid Analgesics for Cancer Pain Management from the Health Worker Perspective

description: The increasing incidence of oncological diseases creates a corresponding need for effective cancer pain management (CPM). The lack of access to and availability of opioid analgesics in most countries leads to avoidable suffering. This systematic review aims to identify barriers to accessing opioids, as described in literature that reflects the perspective of health-care workers. A systematic literature search was performed in May 2018 and updated in December 2022, using search terms related to “cancer pain,” “opioid analgesics,” “access,” and “health-care personnel.” Medline, Embase, and PsycInfo were searched. Forty-two studies met the inclusion criteria. Principal barriers that have hindered licit access to medical opioids include regulatory, systemic, educational, patient-related, and societal. These barriers are rooted in a lack of adequate education about the importance and significance of appropriate CPM. Barriers were often mutually reinforcing. A interdisciplinary approach is required to overcome them. This research contributes to the important global health issue of unduly limited access to opioid analgesics. It provides interdisciplinary solutions in terms of guidelines to ensure that governments respect, protect, and fulfill the right to the highest attainable standard of health, which includes the relief of severe pain.
DOI: 10.6084/m9.figshare.24221162.v1
title: Systematic Review on Barriers to Access Opioid Analgesics for Cancer Pain Management from the Health Worker Perspective

description: The increasing incidence of oncological diseases creates a corresponding need for effective cancer pain management (CPM). The lack of access to and availability of opioid analgesics in most countries leads to avoidable suffering. This systematic review aims to identify barriers to accessing opioids, as described in literature that reflects the perspective of health-care workers. A systematic literature search was performed in May 2018 and updated in December 2022, using search terms related to “cancer pain,” “opioid analgesics,” “access,” and “health-care personnel.” Medline, Embase, and PsycInfo were searched. Forty-two studies met the inclusion criteria. Principal barriers that have hindered licit access to medical opioids include regulatory, systemic, educational, patient-related, and societal. These barriers are rooted in a lack of adequate education about the importance and significance of appropriate CPM. Barriers were often mutually reinforcing. A interdisciplinary approach is required to overcome them. This research contributes to the important global health issue of unduly limited access to opioid analgesics. It provides interdisciplinary solutions in terms of guidelines to ensure that governments respect, protect, and fulfill the right to the highest attainable standard of health, which includes the relief of severe pain.
DOI: 10.15151/esrf-es-1310466942
title: Can superionic ammonia exist in different structures?

description: The aim of this proposal is to study the properties (structure, dilatation coefficient) and thermodynamic P-T boundaries of the superionic phase of ammonia in the range 40-100 GPa and 300-3500 K. Superionic ammonia is characterized by a fast diffusion of the protons through the persistent nitrogen lattice. Since ammonia is an important component of the interior of icy planets and exoplanets, the precise knowledge of the P-T range of stability of superionic ammonia and of its physical properties is needed to determine whether the isentropes of these planets cross this phase. Recently, the existence of two different phases of superionic ammonia has been claimed. Nevertheless, there is to date no confirmation of this phase by independent experiments nor recent theoretical calculations, and no information on its structure/EOS are available. We propose here to explore the structural evolution of superionic ammonia to identify accurately the different regimes/structures.
DOI: 10.15151/esrf-es-1308544909
title: Hydrogen in the Earth’s core: Phase relations and density measurements at extreme conditions

description: In this experiment, we aim to investigate Fe-Si-H phase relations at high-pressure and high-temperature conditions. The experimental results are significant for constraining the composition of the inner core of the Earth and other terrestrial planets. In addition, we plan to measure the thermal equation of state of Fe-Si-H-alloys to get the density and bulk modulus of the materials that are the necessary parameters for calculating sound velocities. Our measurements will allow the refinement of the amount of Si and H in the Earth’s core.
DOI: 10.6084/m9.figshare.24135357
title: Data File 1.csv

description: Data for the optical constants, n and k, of germanium antimony telluride (GST), in its amorphous and crystalline states, measured by spectroscopic ellipsometry (SE), for the spectral range of 350-30,000
DOI: 10.6084/m9.figshare.24135357.v1
title: Data File 1.csv

description: Data for the optical constants, n and k, of germanium antimony telluride (GST), in its amorphous and crystalline states, measured by spectroscopic ellipsometry (SE), for the spectral range of 350-30,000
DOI: 10.5519/qd.lj2p1ha0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (170 records)
DOI: 10.6084/m9.figshare.24649809
title: Fabrication of compliant vascular grafts by fiber-reinforced 3D bioprinting

description: Supporting data for the paper entitled 'Fabrication of compliant vascular grafts by fiber-reinforced 3D'
DOI: 10.6084/m9.figshare.24649809.v1
title: Fabrication of compliant vascular grafts by fiber-reinforced 3D bioprinting

description: Supporting data for the paper entitled 'Fabrication of compliant vascular grafts by fiber-reinforced 3D'
DOI: 10.5281/zenodo.10213996
title: Gene and TE annotation - Merenciano 2023

description: Gene and TE annotation for wild-type strains of D. melanogaster and D. simulans.
Both genomes were annotated with liftoff v.1.6.3, parameters -a 0.5 -s 0.75 -exclude_partial. For D. melanogaster, we used reference genome from flybase r6.16; and for D. simulans we used ref genome from flybase r2.02
 
D. melanogaster Tropical region (São José do Rio Preto - Brazil):
-dmsj23
-dmsj7
D. melanogaster Temperate region (Gotheron - France):
-dmgoth101
-dmgoth63
 
D. simulans Tropical region (São José do Rio Preto - Brazil):
-dssj9
-dssj27
D. simulans Temperate region (Gotheron - France):
-dsgoth31
-dsgoth613
DOI: 10.5281/zenodo.10213997
title: Gene and TE annotation - Merenciano 2023

description: Gene and TE annotation for wild-type strains of D. melanogaster and D. simulans.
Both genomes were annotated with liftoff v.1.6.3, parameters -a 0.5 -s 0.75 -exclude_partial. For D. melanogaster, we used reference genome from flybase r6.16; and for D. simulans we used ref genome from flybase r2.02
 
D. melanogaster Tropical region (São José do Rio Preto - Brazil):
-dmsj23
-dmsj7
D. melanogaster Temperate region (Gotheron - France):
-dmgoth101
-dmgoth63
 
D. simulans Tropical region (São José do Rio Preto - Brazil):
-dssj9
-dssj27
D. simulans Temperate region (Gotheron - France):
-dsgoth31
-dsgoth613
DOI: 10.5281/zenodo.10214080
title: Gene and TE annotation - Merenciano 2023

description: Gene and TE annotation for wild-type strains of D. melanogaster and D. simulans.
Both genomes were annotated with liftoff v.1.6.3, parameters -a 0.5 -s 0.75 -exclude_partial. For D. melanogaster, we used reference genome from flybase r6.16; and for D. simulans we used ref genome from flybase r2.02
 
D. melanogaster Tropical region (São José do Rio Preto - Brazil):
-dmsj23
-dmsj7
D. melanogaster Temperate region (Gotheron - France):
-dmgoth101
-dmgoth63
 
D. simulans Tropical region (São José do Rio Preto - Brazil):
-dssj9
-dssj27
D. simulans Temperate region (Gotheron - France):
-dsgoth31
-dsgoth613
DOI: 10.6084/m9.figshare.24649755
title: 2023_10_18_SES_lifestyle_systematic_rv_SUPPORTING_INFORMATION_corrected.docx

description: This is supplementary material for paper entitled - The influence of socioeconomic status on the association between unhealthy lifestyle factors and adverse health outcomes: a systematic review. Published in Wellcome Open Research
DOI: 10.6084/m9.figshare.24649755.v1
title: 2023_10_18_SES_lifestyle_systematic_rv_SUPPORTING_INFORMATION_corrected.docx

description: This is supplementary material for paper entitled - The influence of socioeconomic status on the association between unhealthy lifestyle factors and adverse health outcomes: a systematic review. Published in Wellcome Open Research
DOI: 10.7910/dvn/borzya
title: data

description: data
DOI: 10.25345/c5dr2pk8b
title: MassIVE MSV000093519 - MS-based Proteomics Analysis of Cerebrospinal Fluid from Niemann-Pick type C Disease Patients
title: MS-based proteomics dataset of CSF from NPC patients
DOI: 10.25345/c5901zs50
title: MassIVE MSV000093520 - Differential partitioning by disorder-mediated condensates
title: Samples 1012398_F1-F8: Using recombinant purified mCherry-tagged FUS-IDR we reconstituted condensates in a soluble nuclear extract isolated from U2OS cells. The extract was fractionated by centrifugation into a supernatant and pellet. Labels 126, 127, 128 are supernatant replicates and labels 129, 130, 131 are pellet replicates. Samples 994350_F1-8: Using recombinant purified mEGFP-tagged MED1-IDR we reconstituted condensates in a soluble nuclear extract isolated from U2OS cells. The extract was fractionated by centrifugation into a supernatant and pellet. Labels 126, 127, 128 are supernatant replicates and labels 129, 130, 131 are pellet replicates. For the proximity biotinylation method, we used SILAC (Lys-6, Arg-6) in the media of cells expressing the control while both FUS-IDR and MED1-IDR cells were grown in natural isotope conditions. Cells were subject to the biotinylation protocol followed by nuclear extract preparation. Light and heavy extracts were mixed at a 1:1 ratio followed by streptavidin pulldown, stringent washing, and elution. Two independent replicates of SILAC data were collected for both FUS-IDR (QEX2_1011001 and ECL1_1073837) and MED1-IDR (QEX2_996337 and ECL1_1078014).
DOI: 10.6084/m9.figshare.24649839
title: 2004 Paleobiology Wilf & Johnson dataset

description: This is the original database file that supplemented the following primary article:Wilf, P., and K.R. Johnson, 2004, Land plant extinction at the end of the Cretaceous: a quantitative analysis of the North Dakota megafloral record. <i>Paleobiology</i>, v. 30, p. 347–368. doi:10.1666/0094-8373(2004)0302.0.CO;2The original annotation on p. 351-352 of the primary article read as follows:"The complete data set used in this article is available as a single electronic file for unrestricted download from the Paleobiology Database, www.paleodb.org (under ‘‘major data sets deposited’’) or by request from either author. Detailed locality data, most of which are provided by Johnson (2002), are also archived without access restriction in the Paleobiology Database (search under the locality names in the electronic file or under ‘‘Authorizer = Johnson’’)."We often receive email requests for this file, which seems no longer to be available at the Paleobiology Database (now at https://paleobiodb.org) and is thus archived here to preserve it. However, the locality data and floral lists remain available at PaleobioDb as entered.The file is a standard Excel workbook in two tabs: 1. species by locality matrix. 2. species by 1m stratigraphic-bin matrix, using minimum abundances. See the file and the primary article for all details.<br><br>
DOI: 10.5517/ccdc.csd.cc2fw06k
title: CCDC 2260278: Experimental Crystal Structure Determination

description: Related Article: Felix J. Rizzuto, Shyam C. Pal, Eleanor R. Kearns, Carol Hua, Marcello B. Solomon, Patrick W. Doheny, Thomas B. Faust, Cameron J. Kepert, Madhab C. Das, Deanna M. D'Alessandro|2023|CrystEngComm|25|6434|doi:10.1039/D3CE00541K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fw07l
title: CCDC 2260279: Experimental Crystal Structure Determination

description: Related Article: Felix J. Rizzuto, Shyam C. Pal, Eleanor R. Kearns, Carol Hua, Marcello B. Solomon, Patrick W. Doheny, Thomas B. Faust, Cameron J. Kepert, Madhab C. Das, Deanna M. D'Alessandro|2023|CrystEngComm|25|6434|doi:10.1039/D3CE00541K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fw08m
title: CCDC 2260280: Experimental Crystal Structure Determination

description: Related Article: Felix J. Rizzuto, Shyam C. Pal, Eleanor R. Kearns, Carol Hua, Marcello B. Solomon, Patrick W. Doheny, Thomas B. Faust, Cameron J. Kepert, Madhab C. Das, Deanna M. D'Alessandro|2023|CrystEngComm|25|6434|doi:10.1039/D3CE00541K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fw09n
title: CCDC 2260281: Experimental Crystal Structure Determination

description: Related Article: Felix J. Rizzuto, Shyam C. Pal, Eleanor R. Kearns, Carol Hua, Marcello B. Solomon, Patrick W. Doheny, Thomas B. Faust, Cameron J. Kepert, Madhab C. Das, Deanna M. D'Alessandro|2023|CrystEngComm|25|6434|doi:10.1039/D3CE00541K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fw0bp
title: CCDC 2260282: Experimental Crystal Structure Determination

description: Related Article: Felix J. Rizzuto, Shyam C. Pal, Eleanor R. Kearns, Carol Hua, Marcello B. Solomon, Patrick W. Doheny, Thomas B. Faust, Cameron J. Kepert, Madhab C. Das, Deanna M. D'Alessandro|2023|CrystEngComm|25|6434|doi:10.1039/D3CE00541K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fx63p
title: CCDC 2261422: Experimental Crystal Structure Determination

description: Related Article: Andres Alguacil, Franco Scalambra, Antonio Romerosa, Andreia Bento-Oliveira, Fernanda Marques, Ines Maximiano, Rodrigo F. M. de Almeida, Ana Isabel Tomaz, Andreia Valente|2023|Bioinorg.Chem.Appl.|2023|15|doi:10.1155/2023/6669394
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d9rp5
title: CCDC 2213917: Experimental Crystal Structure Determination

description: Related Article: Arup Bhowmik, Koushik Naskar, Shantonu Roy, Sudip Karmakar, Writhabrata Sarkar, Imtiaj Mondal, Arindam Sana, Indubhusan Deb|2023|Chem.Commun.|59|13899|doi:10.1039/D3CC04443B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g2xgy
title: CCDC 2266920: Experimental Crystal Structure Determination

description: Related Article: Arimalai Dinakararaja Samyuktha, Kannatt Radhakrishnan Ethiraj, Ponnusamy Shanmugam|2023|New J.Chem.|47|20818|doi:10.1039/D3NJ03766E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g53pg
title: CCDC 2269035: Experimental Crystal Structure Determination

description: Related Article: Hongbin Chen, Xiangjian Cao, Peiran Wang, Fangfang Huang, Yunxin Zhang, Huazhe Liang, Xingqi Bi, Tengfei He, Wanying Feng, Yaxiao Guo, Zaifei Ma, Guankui Long, Zhaoyang Yao, Bin Kan, Chenxi Li, Xiangjian Wan, Yongsheng Chen|2023|J.Mater.Chem.A|11|25368|doi:10.1039/D3TA04171A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10214131
title: TYPES AND MANIFESTATIONS OF RHYTHM IN THE WORK OF ART
DOI: 10.5281/zenodo.10214132
title: TYPES AND MANIFESTATIONS OF RHYTHM IN THE WORK OF ART
DOI: 10.5281/zenodo.10209831
title: Dataset accompanying 'The Representation of Priors and Decisions in The Human Parietal Cortex'

description: This dataset accompanies the manuscript 'The Representation of Priors and Decisions in The Human Parietal Cortex', published in PLoS Biology.
This dataset consists of:
1) Biophysical model simulations of a neural mass model performing a 2-alternative perceptual decision making task. 
2) MEG data from 26 human volunteers performing the same task (see fig1 of the manuscript). MEG data were combined with anatomical MRI scans (not shared) to source localise brain activity in parietal cortex. The neural source time courses are shared. Full details can be found in the methods section of the manuscript.
3) Analysis code to reproduce all main data figures in the manuscript. Details of how to run the analyses are included in the analysis code documentation.
4) .txt files including the summary data necessary to reproduce figures in the manuscript. This is to allow users who do not have access to matlab to access the data underlying the figures without running the entire analysis pipeline.