cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6977613
title: Classification of hierarchical text using geometric deep learning: the case of clinical trials corpus

description: We consider the hierarchical representation of documents as graphs and use geometric deep learning to classify them into different categories. While graph neural networks can efficiently handle the variable structure of hierarchical documents using the permutation invariant message passing operations, we show that we can gain extra performance improvements using our proposed selective graph pooling operation that arises from the fact that some parts of the hierarchy are invariable across different documents. We applied our model to classify clinical trial (CT) protocols into completed and terminated categories. We use bag-of-words based as well as pre-trained transformer-based embeddings to featurize the graph nodes, achieving f1-scores $\simeq 0.85$ on a publicly available large scale CT registry of around 360K protocols. We further demonstrate how the selective pooling can add insights into the CT termination status prediction.
description: V1.1.0 adds ternary labels, i.e., it distinguishes between low-, medium-, and high-risk clinical trials.
DOI: 10.5281/zenodo.5482331
title: Classification of hierarchical text using geometric deep learning: the case of clinical trials corpus

description: We consider the hierarchical representation of documents as graphs and use geometric deep learning to classify them into different categories. While graph neural networks can efficiently handle the variable structure of hierarchical documents using the permutation invariant message passing operations, we show that we can gain extra performance improvements using our proposed selective graph pooling operation that arises from the fact that some parts of the hierarchy are invariable across different documents. We applied our model to classify clinical trial (CT) protocols into completed and terminated categories. We use bag-of-words based as well as pre-trained transformer-based embeddings to featurize the graph nodes, achieving f1-scores $\simeq 0.85$ on a publicly available large scale CT registry of around 360K protocols. We further demonstrate how the selective pooling can add insights into the CT termination status prediction.
description: V1.1.0 adds ternary labels, i.e., it distinguishes between low-, medium-, and high-risk clinical trials.
DOI: 10.6084/m9.figshare.20459409
title: Garrulus glandarius SPAdes preassembly

description: ....
DOI: 10.6084/m9.figshare.20459409.v1
title: Garrulus glandarius SPAdes preassembly

description: ....
DOI: 10.5281/zenodo.6954836
title: Bacteria and archaea of the Columbia and Willamette Rivers, 16S rRNA gene amplicon library metadata

description: Bacterial and archaeal communities in the Columbia and Willamette Rivers in the Portland, OR, USA, region were characterized by 16S rRNA gene amplicon sequencing as part of the Lewis & Clark College spring 2022 Microbial Ecology course. Whole-water (&gt;0.2 µm) samples were collected from: the Willamette River; the Columbia River above the confluence with the Willamette; and the Columbia River just downstream of the confluence with the Willamette. This dataset provides additional metadata to supplement the DNA sequences archived with the NCBI SRA at https://www.ncbi.nlm.nih.gov/sra/PRJNA865380
DOI: 10.5281/zenodo.6954835
title: Bacteria and archaea of the Columbia and Willamette Rivers, 16S rRNA gene amplicon library metadata

description: Bacterial and archaeal communities in the Columbia and Willamette Rivers in the Portland, OR, USA, region were characterized by 16S rRNA gene amplicon sequencing as part of the Lewis & Clark College spring 2022 Microbial Ecology course. Whole-water (&gt;0.2 µm) samples were collected from: the Willamette River; the Columbia River above the confluence with the Willamette; and the Columbia River just downstream of the confluence with the Willamette. This dataset provides additional metadata to supplement the DNA sequences archived with the NCBI SRA at https://www.ncbi.nlm.nih.gov/sra/PRJNA865380
DOI: 10.6084/m9.figshare.20459424
title: Cassia.xlsx

description: Data from laboratory analysis
DOI: 10.6084/m9.figshare.20459424.v1
title: Cassia.xlsx

description: Data from laboratory analysis
DOI: 10.6084/m9.figshare.20459478
title: threskiornis_aethiopicus_spades_01.fasta.gz

description: ....
DOI: 10.6084/m9.figshare.20459478.v1
title: threskiornis_aethiopicus_spades_01.fasta.gz

description: ....
DOI: 10.34740/kaggle/dsv/4050275
title: Tales from the Pizza Guy
DOI: 10.3886/e171101
title: Data and Code for: Intangible Capital and Modern Economies

description: Data and Do files to replicate figures in Journal of Economic Perspectives Article <br><b>Intangible Capital and Modern Economies</b> by Carol Corrado, Jonathan Haskel, Cecilia Jona-Lasinio, and Massimiliano Iommi<br>
description: Market sector
description: Market sector, US and European economies. Smallest Geographic Unit: Country
description: mixed mode;
DOI: 10.6084/m9.figshare.20459529
title: Octopus bimaculoides SPAdes preassembly

description: ....
DOI: 10.6084/m9.figshare.20459529.v1
title: Octopus bimaculoides SPAdes preassembly

description: ....
DOI: 10.34740/kaggle/dsv/4050365
title: US counties COVID 19 dataset
DOI: 10.5281/zenodo.6977639
title: Data and code from Wang et al. "An evaluation of sexual dimorphism in head size and shape in Red Salamanders (Pseudotriton ruber)"

description: Data and code from Wang et al., "An evaluation of sexual dimorphism in head size and shape in Red Salamanders (<em>Pseudotriton ruber</em>)"
DOI: 10.5281/zenodo.6977638
title: Data and code from Wang et al. "An evaluation of sexual dimorphism in head size and shape in Red Salamanders (Pseudotriton ruber)"

description: Data and code from Wang et al., "An evaluation of sexual dimorphism in head size and shape in Red Salamanders (<em>Pseudotriton ruber</em>)"
DOI: 10.5281/zenodo.6338639
title: A prosthesis utilizing natural vestibular encoding strategies improves sensorimotor performance in monkeys

description: Dataset repository for "<strong>A prosthesis utilizing natural vestibular encoding strategies improves sensorimotor performance in monkeys"</strong>
DOI: 10.5281/zenodo.6338638
title: A prosthesis utilizing natural vestibular encoding strategies improves sensorimotor performance in monkeys

description: Dataset repository for "<strong>A prosthesis utilizing natural vestibular encoding strategies improves sensorimotor performance in monkeys"</strong>
DOI: 10.6084/m9.figshare.20459550
title: Epizoanthus stellaris SPAdes preassembly

description: ....
DOI: 10.6084/m9.figshare.20459550.v1
title: Epizoanthus stellaris SPAdes preassembly

description: ....
DOI: 10.5281/zenodo.6977683
title: Above-anvil Cirrus Plume Producing Storm Tracks

description: Two separate CSV files containing all warm and cold above-anvil cirrus plume-producing storm tracks used in Murillo and Homeyer (under review). These files contain the hourly storm number, binary above-anvil cirrus plume flag, date and time in UTC, longitude, and latitude positions of the overshooting top associated with the above-anvil cirrus plume-producing storm. The first and second rows contain the variable names and units, respectively, with the remaining rows containing the variable values.
DOI: 10.6084/m9.figshare.20459571
title: erythroxylum_suave_spades_01.fasta.gz

description: ....
DOI: 10.6084/m9.figshare.20459571.v1
title: erythroxylum_suave_spades_01.fasta.gz

description: ....
DOI: 10.5281/zenodo.6977602
title: MSDI: a geo-tagged drone imagery for absolute visual localization

description: The MSDI (Manchester Surface Drone Imagery) is a geo-imagery registration dataset. <br> The dataset consists of <br> a. 446 downward-facing drone images.<br> b. 89 forward-facing(45-degree) drone images.<br> c. 64 forward-facing (0-degree) drone images. <br> d. parameter matrix of drone camera and transformation matrix.<br> e. checkerboard images for camera calibration. This dataset is collected by Mochuan Zhan for his MSC project: Registration of UAV Imagery to Aerial and Satellite Imagery<br> in the University of Manchester (2021/9 - 2022/9) which is supervised by Dr.Terence Patrick Morley. This project aims at <br> developing a system that could perform efficient UAV visual localization through image registration based on local feature <br> detectors and the technique of high-throughput computing. Notice:<br> The corresponding satellite image from Google Map and Bing Map could be obtained by my program, Link: <pre>https://doi.org/10.5281/zenodo.6977652</pre> A Ground Control Point (GCP) selector is provided for user to select GCP and create file with small effort.<br> By registrating corresponding images, users could evaluate the performance of their registration techniques. The Imagery contains images of 8 Areas in Manchester:<br> - Manchester Aquatics Center 80<br> - Manchester ASDA 76<br> - Manchester Bussiness School 37<br> - Manchester Energy Center 71<br> - Manchester Holy Name Church 58<br> - Manchester Hulme Park 47<br> - Manchester Hulme Part(0-degree) 64<br> - Manchester Hulme Part(45-degree) 89<br> - Manchester Metropolitan university 29 <br> - Manchester Museum 48 Device Information:<br> - Drone brand: Parrot<br> - Drone model: Parrot Anafi Software Information:<br> - Pix4DCapture<br> - FreeFlight6 Flight parameters:<br> - Height 100m<br> - Speed 5m/s<br> - overlap low <br>
DOI: 10.5281/zenodo.6977601
title: MSDI: a geo-tagged drone imagery for absolute visual localization

description: The MSDI (Manchester Surface Drone Imagery) is a geo-imagery registration dataset. <br> The dataset consists of <br> a. 446 downward-facing drone images.<br> b. 89 forward-facing(45-degree) drone images.<br> c. 64 forward-facing (0-degree) drone images. <br> d. parameter matrix of drone camera and transformation matrix.<br> e. checkerboard images for camera calibration. This dataset is collected by Mochuan Zhan for his MSC project: Registration of UAV Imagery to Aerial and Satellite Imagery<br> in the University of Manchester (2021/9 - 2022/9) which is supervised by Dr.Terence Patrick Morley. This project aims at <br> developing a system that could perform efficient UAV visual localization through image registration based on local feature <br> detectors and the technique of high-throughput computing. Notice:<br> The corresponding satellite image from Google Map and Bing Map could be obtained by my program, Link: <pre>https://doi.org/10.5281/zenodo.6977652</pre> A Ground Control Point (GCP) selector is provided for user to select GCP and create file with small effort.<br> By registrating corresponding images, users could evaluate the performance of their registration techniques. The Imagery contains images of 8 Areas in Manchester:<br> - Manchester Aquatics Center 80<br> - Manchester ASDA 76<br> - Manchester Bussiness School 37<br> - Manchester Energy Center 71<br> - Manchester Holy Name Church 58<br> - Manchester Hulme Park 47<br> - Manchester Hulme Part(0-degree) 64<br> - Manchester Hulme Part(45-degree) 89<br> - Manchester Metropolitan university 29 <br> - Manchester Museum 48 Device Information:<br> - Drone brand: Parrot<br> - Drone model: Parrot Anafi Software Information:<br> - Pix4DCapture<br> - FreeFlight6 Flight parameters:<br> - Height 100m<br> - Speed 5m/s<br> - overlap low <br>
DOI: 10.6084/m9.figshare.20459586
title: Accipiter superciliosus SPAdes preassembly

description: ....
DOI: 10.6084/m9.figshare.20459586.v1
title: Accipiter superciliosus SPAdes preassembly

description: ....
DOI: 10.17608/k6.auckland.20326743.v1
title: Metadata Record HVN1926 - Roadmap for novel foods containing plants and plant extracts endemic to Aotearoa New Zealand

description: This metadata record and it's attached files make statements about the kinds of data collected as part of this research, and set out policies for governance of that data, now and in the future. Project Description: Project to create overview of novel food regulatory environment for key markets of interest to NZ Food and Beverage sector, defining how requirements under novel food legal frameworks impact new product development and export opportunities, including case studies of native plants.
DOI: 10.7284/111601
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1203 using a SeaBird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/149099
title: GNSS (Global Navigation Satellite System) data collected during research cruise LMG0413A using a Ashtech ADU2 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/149100
title: GNSS (Global Navigation Satellite System) data collected during research cruise LMG0413A using a Garmin GPS-17HVS instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/149104
title: GNSS (Global Navigation Satellite System) data collected during research cruise LMG0413A using a Trimble Centurion P(Y) instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/149105
title: Gyrocompass data collected during research cruise LMG0413A using a SGB Meridian instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136268
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise TN362 using a SeaBird SBE-911+ instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/149356
title: Multibeam Echosounder data collected during research cruise TN362 using a Kongsberg EM302 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148329
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise TN384 using a Hawaii UHDAS instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148326
title: Anemometer data collected during research cruise TN384 using a RMYoung 06206 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148327
title: Anemometer data collected during research cruise TN384 using a RMYoung 06206 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148328
title: Anemometer data collected during research cruise TN384 using a RMYoung 85106 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148330
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise TN384 using a SeaBird SBE-911+ instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148331
title: Fluorometer data collected during research cruise TN384 using a WETLabs WETStar instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148335
title: GNSS (Global Navigation Satellite System) data collected during research cruise TN384 using a CCTech C-Nav 3050 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148336
title: Gravimeter data collected during research cruise TN384 using a Bell BGM-3 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148337
title: Gyrocompass data collected during research cruise TN384 using a Sperry NAVIGAT 3000 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148338
title: Gyrocompass data collected during research cruise TN384 using a Sperry NAVIGAT 3000 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148339
title: INS (Inertial Navigation System) data collected during research cruise TN384 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148340
title: INS (Inertial Navigation System) data collected during research cruise TN384 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148342
title: Multibeam Echosounder data collected during research cruise TN384 using a Kongsberg EM302 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148343
title: Radiometer data collected during research cruise TN384 using a Biospherical QSR-2150 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148344
title: Radiometer data collected during research cruise TN384 using a Eppley RAD instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148345
title: SSV (Sound Speed Velocimeter) data collected during research cruise TN384 using a AML SV&T instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148346
title: Water Temperature data collected during research cruise TN384 using a SeaBird SBE-38 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148347
title: Water Temperature data collected during research cruise TN384 using a RMRCo ROSR instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148348
title: Transmissometer data collected during research cruise TN384 using a WETLabs C-Star instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148349
title: TSG (Thermosalinograph) data collected during research cruise TN384 using a SeaBird SBE-45 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148353
title: Wave Radar data collected during research cruise TN384 using a OceanWaveS WaMoS instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148350
title: Winch data collected during research cruise TN384 using a Markey DESH-5 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148351
title: Winch data collected during research cruise TN384 using a Markey DESH-5 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148352
title: Winch data collected during research cruise TN384 using a Markey DESH-9 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148377
title: Anemometer data collected during research cruise TN386 using a RMYoung 06206 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148378
title: Anemometer data collected during research cruise TN386 using a RMYoung 06206 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148379
title: Anemometer data collected during research cruise TN386 using a RMYoung 85106 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148372
title: Expendable Probe data collected during research cruise TN386 using a Sippican MK21 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148366
title: Fluorometer data collected during research cruise TN386 using a WETLabs WETStar instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148367
title: GNSS (Global Navigation Satellite System) data collected during research cruise TN386 using a CCTech C-Nav 3050 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148388
title: Gravimeter data collected during research cruise TN386 using a Bell BGM-3 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148375
title: Gyrocompass data collected during research cruise TN386 using a Sperry NAVIGAT 3000 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148376
title: Gyrocompass data collected during research cruise TN386 using a Sperry NAVIGAT 3000 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148374
title: INS (Inertial Navigation System) data collected during research cruise TN386 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148383
title: INS (Inertial Navigation System) data collected during research cruise TN386 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148368
title: Radiometer data collected during research cruise TN386 using a Biospherical QSR-2150 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148370
title: Radiometer data collected during research cruise TN386 using a Eppley RAD instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148387
title: SSV (Sound Speed Velocimeter) data collected during research cruise TN386 using a AML SV&T instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148384
title: Water Temperature data collected during research cruise TN386 using a SeaBird SBE-38 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148385
title: Water Temperature data collected during research cruise TN386 using a RMRCo ROSR instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition