cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14288/1.0406474
title: Analysis of ancestry heterozygosity suggests that hybrid incompatibilities in threespine stickleback are environment-dependent

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Hybrid incompatibilities occur when interactions between opposite-ancestry alleles at different loci reduce the fitness of hybrids. Most work on incompatibilities has focused on those that are 'intrinsic', meaning they affect viability and sterility in the laboratory. Theory predicts that ecological selection can also underlie hybrid incompatibilities, but tests of this hypothesis using sequence data are scarce. In this article, we compiled genetic data for F&lt;sub&gt;2&lt;/sub&gt; hybrid crosses between divergent populations of threespine stickleback fish (&lt;em&gt;Gasterosteus aculeatus&lt;/em&gt; L.) that were born and raised in either the field (semi-natural experimental ponds) or the laboratory (aquaria). Because selection against incompatibilities results in elevated ancestry heterozygosity, we tested the prediction that ancestry heterozygosity will be higher in pond-raised fish compared to those raised in aquaria. We found that ancestry heterozygosity was elevated by approximately 3% in crosses raised in ponds compared to those raised in aquaria. Additional analyses support a phenotypic basis for incompatibility and suggest that environment-specific single-locus heterozygote advantage is not the cause of selection on ancestry heterozygosity. Our study provides evidence that, in stickleback, a coarse—albeit indirect—signal of environment-dependent hybrid incompatibility is reliably detectable and suggests that extrinsic incompatibilities can evolve before intrinsic incompatibilities.&lt;/p&gt;
DOI: 10.14288/1.0403826
title: Supplemental Material: Twenty Years On – Has Patient-centered Care Been Equally Well Integrated Among Medical Specialties?

description: The concept of ‘patient-centered care’ was touted as a pillar of good clinical practice and endorsed by the US Institute of Medicine in a seminal 2001 publication. We explore the extent to which differing medical specialties have engaged with the concept over the last 20 years and how and why this attention has varied among a sample of medical specialties since 2001. Reference to patient-centered care in the medical literature for selected specialties was used as a proxy for clinical application of patient-centered care in those disciplines. We undertook a statistical analysis and historical review of the medical literature that references the concept of patient-centered care in pediatrics, obstetrics and gynecology (OB-GYN), orthopedics, radiology, dermatology, and neurosurgery. We analyzed the extent to which the literature referencing patient-centered care has changed for the six disciplines since first mentioned in the Institute of Medicine 2001 publication. We measured changes over time in reference to patient-centered care in the medical literature for six diverse medical specialties. This dataset includes supplemental material to our manuscript including: 1. Database search of keywords used to cross reference “patient-centered care” literature in six medical specialties. 2. Inclusion and exclusion criteria used to screen literature.
DOI: 10.14288/1.0406276
title: Replication Data and Supplementary Material for: Public attitude towards and perceptions of dairy cattle welfare in cow-calf management systems differing in type of social and maternal contact

description: We investigated how Canadian and American participants in an online survey would perceive cow-calf management systems differing in type of social and maternal contact allowed. Attitudes and perceptions of animal welfare were more positive towards the system where calves were not separated from the cows, compared to systems in which the calf was separated and individually housed, separated and group housed, or separated and kept with a foster cow. Participants appeared to value the mother cow-calf relationship and were less accepting of cow-calf management systems that involved separating the calf from their mother.
DOI: 10.14288/1.0406277
title: Data for: The mining industry would benefit economically from a global tax on carbon emissions

description: This data supplements our publication "An unlikely pairing: the mining industry economically benefits from a global tax on carbon emissions". This data is used to test the impact of a hypothetical international carbon taxation regime on a subsection of the mining industry compared to other sectors. A financial model was developed to calculate the cost of carbon taxes for 23 commodities across three industries. The findings show that, given any level of taxation tested, most mining industry commodities would not add more than 30% of their present product value. Comparatively, commodities such as coal could be taxed at more than 150% of their current product value under more intense carbon pricing initiatives, thereby accelerating the transition to renewable energy sources and the consequent demand benefits for mined metals.
DOI: 10.14288/1.0406279
title: Needs assessment of nurse researchers through a research lifecycle framework

description: Conducted in April and May 2021, this needs assessment of nurse researchers at the Okanagan and Vancouver campuses of the University of British Columbia used a research lifecycle framework to better understand researcher needs at different stages of the lifecycle. The survey was administered, distributed, and analyzed using Qualtrics. This data set presents aggregated data for 30 nurse researchers at UBC as well as the survey instrument and text from the initial email survey invitation.
DOI: 10.14288/1.0402135
title: Data from: Descriptive multi-agent epidemiology via molecular screening on Atlantic salmon farms in the northeast Pacific Ocean

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Rapid expansion of salmon aquaculture has resulted in high-density populations that host diverse infectious agents, for which surveillance and monitoring are critical to disease management. Screening can reveal infection diversity from which disease arises, differential patterns of infection in live and dead fish that are difficult to collect in wild populations, and potential risks associated with agent transmission between wild and farmed hosts. We report results from a multi-year infectious-agent screening program of farmed salmon in British Columbia, Canada, using quantitative PCR to assess presence and load of 58 infective agents (viruses, bacteria, and eukaryotes) in 2931 Atlantic salmon (Salmo salar). Our analysis reveals temporal trends, agent correlations within hosts, and agent-associated mortality signatures. Multiple agents, most notably Tenacibaculum maritimum, were elevated in dead and dying salmon. We also report detections of agents only recently shown to infect farmed salmon in BC (Atlantic salmon calicivirus, Cutthroat trout virus-2), detection in freshwater hatcheries of two marine agents (Kudoa thyrsites and Tenacibaculum maritimum), and detection in the ocean of a freshwater agent (Flavobacterium psychrophilum). Our results provide information for farm managers, regulators, and conservationists, and enable further work to explore patterns of multi-agent infection and farm/wild transmission risk.&lt;/p&gt;
DOI: 10.14288/1.0406471
title: Stable isotopes unravel the feeding mode-trophic position relationship in trematode parasites

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;div class="WordSection1" style="text-align:justify;"&gt; &lt;p style="text-align:justify;"&gt;&lt;span&gt;1. Stable isotopes have been sporadically used over the last two decades to characterise host-parasite trophic relationships. The main reason for this scarcity is the lack of an obvious pattern in the ratio of nitrogen stable isotope values (&lt;i&gt;δ&lt;/i&gt;&lt;sup&gt;15&lt;/sup&gt;N) of parasites in comparison to their host tissues, which would be key to understand any host-parasite system dynamics. &lt;/span&gt;&lt;/p&gt; &lt;p style="text-align:justify;"&gt;&lt;span&gt;2. To circumvent this, we focused on a single snail host, &lt;i&gt;Zeacumantus subcarinatus&lt;/i&gt;, and three of its trematode parasites. &lt;/span&gt;&lt;/p&gt; &lt;p style="text-align:justify;"&gt;&lt;span&gt;3. We used stable isotopes to investigate each host-trematode trophic relationship and shed light on the mechanisms utilised by the parasite to reroute its hosts’ biomass. &lt;/span&gt;&lt;/p&gt; &lt;p style="text-align:justify;"&gt;&lt;span&gt;4. All our trematodes were found to be &lt;sup&gt;15&lt;/sup&gt;N-enriched compared to their host, with their &lt;i&gt;δ&lt;/i&gt;&lt;sup&gt;15&lt;/sup&gt;N values strongly related to their feeding behaviours: passive vs active. It was possible to ‘rank’ these parasite species and assess their ‘relative’ trophic position using &lt;i&gt;δ&lt;/i&gt;&lt;sup&gt;15&lt;/sup&gt;N values. We also demonstrated that including a broader range of samples (e.g. host food and faeces, multiple parasite life stages) helped understand the metabolic mechanisms used by the various participants, and that using carbon stable isotope values and C:N ratios allowed to identify an important lipid requirement of these trematode parasites. Finally, we show how critical it is to not ignore parasitic infections as they can have a great influence on their host’s trophic position.&lt;/span&gt;&lt;/p&gt; &lt;p style="text-align:justify;margin-bottom:3px;"&gt;&lt;span&gt;5. We have shown that by focussing on a single host species and a single taxonomic group of parasites, we can remove a certain amount of variation recorded by broader isotope studies. We hope that these data will ultimately improve our ability to place parasites in food webs, and thus improve our understanding of the connections and interactions that dictate food web dynamics. &lt;/span&gt;&lt;/p&gt; &lt;/div&gt;
DOI: 10.14288/1.0413227
title: UBC DRI Needs Assessment

description: From May 17th - June 12, 2021, UBC Advanced Research Computing (ARC) and the UBC Library from both Vancouver and Okanagan Campuses launched the DRI Needs Assessment Survey to investigate UBC researchers’ needs in 25 distinct areas relating to DRI. the survey received a total of 241 responses. Following the survey, three focus groups were conducted with UBC researchers to gain additional insights. Key findings from the survey indicate a need for increased collaboration among units providing DRI training and support, and an enhanced communication strategy to engage researchers with DRI campus training and supports.
DOI: 10.5281/zenodo.15272223
title: CMG_geochem_dataset

description: There are 67 training datasets and 19 validation datasets
DOI: 10.5281/zenodo.15272224
title: CMG_geochem_dataset

description: There are 67 training datasets and 19 validation datasets
DOI: 10.14288/1.0406472
title: Faster evolution of a premating reproductive barrier is not associated with faster speciation rates in New World passerine birds

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Why are speciation rates so variable across the tree of life? One hypothesis is that this variation is explained by how rapidly reproductive barriers evolve. We tested this hypothesis by conducting a comparative study of the evolution of bird song, a premating barrier to reproduction. Speciation in birds is typically initiated when geographically isolated (allopatric) populations evolve reproductive barriers. We measured the strength of song as a premating barrier between closely related allopatric populations by conducting 2,339 field experiments to measure song discrimination for 175 taxon pairs of allopatric or parapatric New World passerine birds, and estimated recent speciation rates from a global molecular phylogeny of birds. Taxon pairs with high song discrimination in allopatry failed to regularly interbreed in parapatry, evidence that song discrimination is indeed an important reproductive barrier. However, evolutionary rates of song discrimination were not associated with recent speciation rates, and song discrimination evolves faster in suboscine passerines than their more species-rich sister clade, the oscines. Our findings support the long-held idea that song is a key premating reproductive barrier in birds, but show that faster evolution of this reproductive barrier between populations does not result in faster diversification betweeen species.&lt;/p&gt;
DOI: 10.14288/1.0406280
title: Replication Data for: Timing and magnitude of climate driven range shifts in transboundary fish stocks challenge their management

description: Climate change is shifting the distribution of shared fish stocks between neighboring countries’ Exclusive Economic Zones (EEZs) and the high seas. The timescale of these transboundary shifts determines how climate change will affect international fisheries governance. Here, we explore this timescale by coupling a large ensemble simulation of an Earth system model under a high emission climate change scenario to a dynamic population model. We show that by 2030, 23% of transboundary stocks will have shifted and 78% of the world’s EEZs will have experienced at least one shifting stock. By the end of this century, projections show a total of 45% of stocks shifting globally and 81% of EEZs waters with at least one shifting stock. The magnitude of such shifts is reflected in changes in catch-proportion between EEZs sharing a transboundary stock. By 2030, global EEZs are projected to experience an average change of 59% in catch proportion of transboundary stocks. Many countries that are highly dependent on fisheries for livelihood and food security emerge as hotspots for transboundary shifts. These hotspots are characterized by early shifts in the distribution of an important number of transboundary stocks. Existing international fisheries agreements need to be assessed for their capacity to address the social-ecological implications of climate change driven transboundary shifts and strengthened where necessary to limit potential conflict between the parties of interest. Meanwhile, new agreements will need to be anticipatory and consider these concerns and their associated uncertainties to be resilient to global change.
DOI: 10.14288/1.0406278
title: Replication Data for: "Do pupillary responses during authentic slot machine use reflect arousal or screen luminance fluctuations? A proof-of-concept study"

description: This repository contains data and analysis scripts for the paper "Do pupillary responses during authentic slot machine use reflect arousal or screen luminance fluctuations? A proof-of-concept study" by Andy J. Kim, W. Spencer Murch, Eve H. Limbrick-Oldfield, Mario A. Ferrari, Kent I. MacDonald, Jolande Fooken, Mariya V. Cherkasova, Miriam Spering, and Luke Clark (in prep.). The data were collected from two real slot machines, and multiple samples of human participants. They include pupillometric recordings from research participants looking at images of different brightness, as well as participants actively engaged in slot machine gambling.
DOI: 10.14288/1.0406478
title: Global camera trap synthesis highlights the importance of protected areas in maintaining mammal diversity

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;The establishment of protected areas (PAs) is a central strategy for global biodiversity conservation. While the role of PAs in protecting habitat has been highlighted, their effectiveness at protecting mammal communities remains unclear. We analyzed a global dataset from over 8,671 camera traps in 23 countries on four continents that detected 321 medium- to large-bodied mammal species. We found a strong positive correlation between mammal taxonomic diversity and the proportion of a surveyed area covered by PAs at a global scale (b = 0.39, 95% CI = 0.19, 0.60) and in Indomalaya (b = 0.69, 95% CI = 0.19,1.2), as well as between functional diversity and PA coverage in the Nearctic (b = 0.47, 95% CI = 0.09, 0.85), after controlling for human disturbances and environmental variation. Functional diversity was only weakly (and insignificantly) correlated with PA coverage at the global scale (b =0.22, 95% CI = -0.02, 0.46), pointing to a need to better understand the functional response of mammal communities to protection. Our study provides important evidence of the global effectiveness of PAs in conserving terrestrial mammals and emphasizes the critical role of area-based conservation in a post-2020 biodiversity framework.&lt;/p&gt;
DOI: 10.14288/1.0406477
title: Local plant richness predicts bee abundance and diversity in a study of urban residential yards

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Understanding the drivers of biodiversity in cities is a central goal of urban ecology. There is currently intense scientific and public interest in the factors that influence pollinator diversity in cities and their surroundings. Existing studies point to a variety of landscape and local factors as potentially important, including urbanization (often defined as impervious surface cover in the surrounding lands), tree canopy cover and the diversity and abundance of locally flowering plants. However, few studies have sought to weigh the relative importance of these predictors of bee community metrics. Using a set of 27 residential yards chosen to represent a gradient of both urbanization and tree canopy cover at a landscape scale, we used pan trapping and netting to assess the abundance and diversity of local bee communities across the City of Ottawa, Ontario, Canada. Surprisingly, the landscape factors (urbanization and tree cover) described only a tiny fraction (&lt; 1%) of the total variance in bee abundance and diversity across sites. This was true regardless of the scale of analysis at which the landscape factors were measured. Instead, a yard's floral richness, and, to a somewhat lesser extent, its floral abundance, emerged as the most important predictors of a yard's bee community abundance and diversity. Our study offers an important counterpoint to a growing body of work emphasizing the impacts of landscape factors on bee communities. Instead, our research suggests that improving bee floral resources by increasing the plant species richness and abundance locally is a powerful tool to support bee conservation, regardless of the level of urbanization or tree cover in the surrounding landscape. Our work highlights that the practice of promoting ‘bee-friendly’ plantings in private yards, currently being undertaken by a number of non-profits around the world, can play an important role in restoring and maintaining urban pollinator communities.&lt;/p&gt;
DOI: 10.5281/zenodo.6045963
title: Computational Metabolomics Workshop Material

description: A set of required input files and expected output files for the Computational Metabolomics Workshop.
DOI: 10.5281/zenodo.6045988
title: Computational Metabolomics Workshop Material

description: A set of required input files and expected output files for the Computational Metabolomics Workshop.
DOI: 10.5281/zenodo.6047248
title: Computational Metabolomics Workshop Material

description: A set of required input files and expected output files for the Computational Metabolomics Workshop.
DOI: 10.15468/dl.pp2ttr
title: Occurrence Download

description: A dataset containing 16660 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Happywhale - Humpback whale in North Atlantic Ocean"
 ]
}

 The dataset includes 16660 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014734-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t52smf
title: Occurrence Download

description: A dataset containing 4008 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "TaxonKey is Mohoua ochrocephala (Gmelin, 1789)"
 ]
}

 The dataset includes 4008 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014735-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7rqgcn
title: Occurrence Download

description: A dataset containing 573 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leucanthemum burnatii"
 ]
}

 The dataset includes 573 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035946-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2xvpd
title: Occurrence Download

description: A dataset containing 257342 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alopecurus geniculatus"
 ]
}

 The dataset includes 257342 records from 1117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035857-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2nx9mh
title: Occurrence Download

description: A dataset containing 291 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leucanthemopsis pallida virescens"
 ]
}

 The dataset includes 291 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035945-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbxk8x
title: Occurrence Download

description: A dataset containing 1073 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poa annua",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1073 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035947-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8bwzkb
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poa annua",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 112 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035948-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.628hgr
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Coreopsis lanceolata"
 ]
}

 The dataset includes 202 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035952-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jw5jyb
title: Occurrence Download

description: A dataset containing 1906 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ammannia latifolia"
 ]
}

 The dataset includes 1906 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035950-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ubp8b
title: Occurrence Download

description: A dataset containing 6447 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Reynoutria multiflora"
 ]
}

 The dataset includes 6447 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035951-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.