cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14054361
title: Allen Mouse CCF v3.1 ASR - Labels Modulo 65000

description: If you use this dataset, please cite the original Allen Mouse CCF paper (https://doi.org/10.1016/j.cell.2020.04.007):



Quanxin Wang, Song-Lin Ding, Yang Li, Josh Royall, David Feng, Phil Lesnar, Nile Graddis, Maitham Naeemi, Benjamin Facer, Anh Ho, Tim Dolbeare, Brandon Blanchard, Nick Dee, Wayne Wakeman, Karla E. Hirokawa, Aaron Szafer, Susan M. Sunkin, Seung Wook Oh, Amy Bernard, John W. Phillips, Michael Hawrylycz, Christof Koch, Hongkui Zeng, Julie A. Harris, Lydia Ng,The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas,Cell,Volume 181, Issue 4,2020


 

More information is available in

https://community.brain-map.org/t/allen-mouse-ccf-accessing-and-using-related-data-and-tools/359

This dataset is a 3D mutichannel image which is derived from the original data introduced by the Allen Mouse Common Coordinate Framework v3 (http://help.brain-map.org/download/attachments/2818171/MouseCCF.pdf).

The image file format is a xml/hdf5 file used by ImageJ/Fiji's bigdataviewer (https://docs.openmicroscopy.org/bio-formats/6.1.0/formats/big-data-viewer.html).

All channels are isotropically sampled with a voxel size of 10 micrometers.

Channels:



0: NISSL (http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/ara_nissl/ara_nissl_10.nrrd)

1: LABELS Border - Delimits the borders of the labels

2: ARA

3: LABELS Mod 65000 : Labels modulo 65000.


The labels modulo 65000 channel is used because the xml/hdf5 file format handles only 16-bits images, while the reference atlas has (sparse) values above 65535. There is no overlap of labels after computing the label value mod 65000. Thus no loss of information in the mod labels channels.

The related ontology from the allen brain (file 1.json) is also stored here.

The only modification between this version and the previous one is to use an ASR convention for the positioning in 3D. It will match exactly the BrainGlobe allen_mouse atlases.

The xml file which prevents the appearance of a fake extra timepoint in the dataset.
DOI: 10.5281/zenodo.4173228
title: Allen Mouse CCF v3.1 ASR - Labels Modulo 65000

description: If you use this dataset, please cite the original Allen Mouse CCF paper (https://doi.org/10.1016/j.cell.2020.04.007):



Quanxin Wang, Song-Lin Ding, Yang Li, Josh Royall, David Feng, Phil Lesnar, Nile Graddis, Maitham Naeemi, Benjamin Facer, Anh Ho, Tim Dolbeare, Brandon Blanchard, Nick Dee, Wayne Wakeman, Karla E. Hirokawa, Aaron Szafer, Susan M. Sunkin, Seung Wook Oh, Amy Bernard, John W. Phillips, Michael Hawrylycz, Christof Koch, Hongkui Zeng, Julie A. Harris, Lydia Ng,The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas,Cell,Volume 181, Issue 4,2020


 

More information is available in

https://community.brain-map.org/t/allen-mouse-ccf-accessing-and-using-related-data-and-tools/359

This dataset is a 3D mutichannel image which is derived from the original data introduced by the Allen Mouse Common Coordinate Framework v3 (http://help.brain-map.org/download/attachments/2818171/MouseCCF.pdf).

The image file format is a xml/hdf5 file used by ImageJ/Fiji's bigdataviewer (https://docs.openmicroscopy.org/bio-formats/6.1.0/formats/big-data-viewer.html).

All channels are isotropically sampled with a voxel size of 10 micrometers.

Channels:



0: NISSL (http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/ara_nissl/ara_nissl_10.nrrd)

1: LABELS Border - Delimits the borders of the labels

2: ARA

3: LABELS Mod 65000 : Labels modulo 65000.


The labels modulo 65000 channel is used because the xml/hdf5 file format handles only 16-bits images, while the reference atlas has (sparse) values above 65535. There is no overlap of labels after computing the label value mod 65000. Thus no loss of information in the mod labels channels.

The related ontology from the allen brain (file 1.json) is also stored here.

The only modification between this version and the previous one is to use an ASR convention for the positioning in 3D. It will match exactly the BrainGlobe allen_mouse atlases.

The xml file which prevents the appearance of a fake extra timepoint in the dataset.
DOI: 10.5281/zenodo.7492551
title: Allen Mouse CCF v3.1 - Labels Modulo 65000

description: If you use this dataset, please cite the original Allen Mouse CCF paper (https://doi.org/10.1016/j.cell.2020.04.007): Quanxin Wang, Song-Lin Ding, Yang Li, Josh Royall, David Feng, Phil Lesnar, Nile Graddis, Maitham Naeemi, Benjamin Facer, Anh Ho, Tim Dolbeare, Brandon Blanchard, Nick Dee, Wayne Wakeman, Karla E. Hirokawa, Aaron Szafer, Susan M. Sunkin, Seung Wook Oh, Amy Bernard, John W. Phillips, Michael Hawrylycz, Christof Koch, Hongkui Zeng, Julie A. Harris, Lydia Ng,<br> The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas,<br> Cell,<br> Volume 181, Issue 4,<br> 2020 More information is available in https://community.brain-map.org/t/allen-mouse-ccf-accessing-and-using-related-data-and-tools/359 This dataset is a 3D mutichannel image which is derived from the original data introduced by the Allen Mouse Common Coordinate Framework v3 (http://help.brain-map.org/download/attachments/2818171/MouseCCF.pdf). The image file format is a xml/hdf5 file used by ImageJ/Fiji's bigdataviewer (https://docs.openmicroscopy.org/bio-formats/6.1.0/formats/big-data-viewer.html). All channels are isotropically sampled with a voxel size of 10 micrometers. Channels: 0: NISSL (http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/ara_nissl/ara_nissl_10.nrrd) 1: LABELS Border - Delimits the borders of the labels 2: ARA 3: LABELS Mod 65000 : Labels modulo 65000. The labels modulo 65000 channel is used because the xml/hdf5 file format handles only 16-bits images, while the reference atlas has (sparse) values above 65535. There is no overlap of labels after computing the label value mod 65000. Thus no loss of information in the mod labels channels. The related ontology from the allen brain (file 1.json) is also stored here. The only modification between this version and the previous one is a small change in the xml file which prevents the appearance of a fake extra timepoint in the dataset.
DOI: 10.6092/unibo/amsacta/7975
title: Conformational data of 3-chloropropionic acid

description: The conformational space of 3-chloropropionic acid was explored using computational methods and the three obtained conformers have been optimized at b3lyp-d3(bj)/def2tzvp level of calculations and the minima have been verified by frequency calculations. The fits obtained through SPFIT/SPCAT for the rotational spectrum of the various conformers are reported. For each conformers have been observed the most abundant isomers and its chlorine-37 isotopologues in natural abundance.
DOI: 10.21227/bnya-mn34
title: FallAllD: A Comprehensive Dataset of Human Falls and Activities of Daily Living

description: DescriptionFallAllD is a large open dataset of human falls and activities of daily living simulated by 15 participants. FallAllD consists of 26420 files collected using three data-loggers worn on the waist, wrist and neck of the subjects. Motion signals are captured using an accelerometer, gyroscope, magnetometer and barometer with efficient configurations that suit the potential applications e.g. fall detection, fall prevention and human activity recognition.Data AcquisitionThree identical data-loggers have been used. They are waist, wrist and neck-worn devices equipped with:· LSM9DS1: 3-axial accelerometer, 3-axial gyroscope and 3-axial magnetometer.· MS5607-02BA03: barometer.Sensors configurations· Accelerometer: Sampling frequency = 238 Hz. Measurement range = ±8 g.· Gyroscope: Sampling frequency = 238 Hz. Angular rate = ± 2000 dps.· Magnetometer: Sampling frequency = 80 Hz. Full scale magnetic field = ±4 Gauss.· Barometer: Sampling frequency = 10 Hz.
DOI: 10.5517/ccs22hd
title: CCDC 716983: Experimental Crystal Structure Determination

description: Related Article: Guang-Xiang Liu, Huan-Min Xu, Xiao-Ming Ren|2010|Jiegou Huaxue|29|1072|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.1594/pangaea.884711
title: GTN-P global mean annual ground temperature data for permafrost near the depth of zero annual amplitude (2007-2016)

description: This data set is a compilation of mean annual ground temperature data measured in boreholes in the Global Terrestrial Network for Permafrost (GTN-P).
description: Supplement to: Biskaborn, Boris K; Smith, Sharon L; Noetzli, Jeannette; Matthes, Heidrun; Vieira, Gonçalo; Streletskiy, Dmitry A; Schoeneich, Philippe; Romanovsky, Vladimir E; Lewkowicz, Antoni G; Abramov, Andrey; Allard, Michel; Boike, Julia; Cable, William L; Christiansen, Hanne Hvidtfeldt; Delaloye, Reynald; Diekmann, Bernhard; Drozdov, Dimitry S; Etzelmüller, Bernd; Grosse, Guido; Guglielmin, Mauro; Ingeman-Nielsen, Thomas; Isaksen, Ketil; Ishikawa, Mamoru; Johansson, Margareta; Johannsson, Halldor; Joo, Anseok; Kaverin, Dmitry; Kholodov, Alexander L; Konstantinov, Pavel; Kröger, Silke; Lambiel, Christophe; Lanckman, Jean-Pierre; Luo, Dongliang; Malkova, Galina; Meiklejohn, Ian; Moskalenko, Nataliya G; Oliva, Marc; Ramos, Miguel; Sannel, A Britta K; Sergeev, Dmitry V; Seybold, Cathy; Skryabin, Pavel; Vasiliev, Alexander; Wu, Qingbai; Yoshikawa, Kenji; Zheleznyak, Mikail; Lantuit, Hugues (2019): Permafrost is warming at a global scale. Nature Communications, 10(1)
DOI: 10.17632/hdhsm43ccz.1
title: Epoxy-tiglianes induce skin keratinocyte wound healing responses and re-epithelialization via classical protein kinase C activation (Supplementary Data)

description: Epoxy-tiglianes are a novel class of diterpene esters isolated from a native Australian rainforest plant, Fontainea picrosperma (Euphorbiaceae). The prototype epoxy-tigliane, EBC-46 (tigilanol tiglate), possesses potent anti-cancer properties and is currently under clinical evaluation as a veterinary and human cancer treatment for cutaneous and subcutaneous tumors, in part mediated via the activation of classical protein kinase C (PKC) isoforms. EBC-46 also stimulates exceptional dermal wound healing in vivo upon tumor destruction, manifested as accelerated wound re-epithelialization and closure. We have previously shown that epoxy-tiglianes stimulate proliferative and wound repopulation responses in immortalized human skin keratinocytes (HaCaTs) in vitro; and identified the key gene and protein targets modulated which facilitate such enhanced wound healing response. The data presented provides supplementary information to our manuscript, identifying the specific PKC isoforms responsible for inducing proliferative and migratory responses in human keratinocytes, following treatment with EBC-46 or analogue, EBC-211. Specifically, the data shows the effects of specific classical PKC (GӦ6976), PKC-α (Ro 31-8220 mesylate) and PKC-βI/-βII (enzastaurin) isoform inhibitors on the enhanced scratch wound repopulation induced by EBC-46 and EBC-211 in vitro (automated time-lapse Confocal Microscopy movies). Additionally, although the effects of classical PKC (GӦ6976) and PKC-βI/-βII (enzastaurin) isoform inhibitors on the differential expression of specific genes of interest shown to be significantly different at the protein level are included in the main manuscript (by Western blotting and ImageJ densitometry), non-significant differences in Western blot protein profiles between untreated and epoxy-tigliane-treated keratinocytes, +/- these PKC inhibitors, are shown here.
DOI: 10.18170/dvn/pvrzgy
title: Supplementary data from a meta-analysis of tolizumab in the treatment of thyroid eye disease

description: Supplementary data from a meta-analysis of tolizumab in the treatment of thyroid eye disease
DOI: 10.3886/e153041v1
title: Code for: Increasing the Cost of Informal Workers: Evidence from Mexico

description: We estimate the effect of increasing the cost of informal jobs on formal firms’ and workers’ outcomes. We combine administrative records and household surveys, and exploit exogenous variation in the cost of informality generated by over 480,000 random work- site inspections in Mexico. For informal workers, inspections temporarily increase the probability of being formalized at the inspected firm, but separations also rise. For formal workers, we find temporary increases in the probability of remaining formally employed at the inspected firm and in monthly wages. At the firm level, increasing the cost of informal jobs leads to persistently lower formal employment.
description: Universe of formal firms in Mexico with at least one formally employed worker between January 2005 and December 2016. <br>Sample of individuals age 16 to 75 years old covered by ENOE's surveys between January 2005 and December 2016. .
DOI: 10.5281/zenodo.13121245
title: Enzymes, PLFA, NLFA and soil properties measured in Juniperus thurifera forest expansion gradient

description: Columns 
Description
Unit
Comments


Site
Huertahernando, Ribarredonda, Maranchón
 
3 levels


Stage
Stage of forest expansion gradient (Mature forest, transition zone and expanding front)
 
3 levels


Microhabitat
Under canopy/Open areas
 
2 levels


Sample code
Sample code corresponding to sampling point
 
 


Plot
18 plots
 
 


From F to AG 
PLFAs peaks
nmol g-1 soil
 


Column AF
NLFA peak
nmol g-1 soil
 


OM 
organic matter
%
 


pH
pH
 
 


From AK to AQ
Enzimes
pmol mg-1 min-1
DOI: 10.5281/zenodo.3629537
title: Quantized versions of fastText embeddings for 158 languages

description: These are compressed (quantized) versions of word embeddings for 158 languages originally available from https://fasttext.cc/docs/en/crawl-vectors.html . Following steps were performed to reduce file size: the output matrix is discarded the quantization is performed with parameters "-qnorm -dsub 1" The average cosine similarity between original and quantized vectors for frequent words is 0.99. The file size is 4-6 times smaller.
description: {"references": ["E. Grave, P. Bojanowski, P. Gupta, A. Joulin, T. Mikolov, Learning Word Vectors for 157 Languages. arXiv:1802.06893"]}
DOI: 10.5517/ccvm78y
title: CCDC 793050: Experimental Crystal Structure Determination

description: Related Article: T.M.Muziol,R.Szczesny,E.Szlyk|2010|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccx3bht
title: CCDC 837356: Experimental Crystal Structure Determination

description: Related Article: T.Muziol,R.Szczesny,E.Szlyk|2011|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/1570b1609db82502f1e60a999ea6626e
title: Water budget components and forest structure in burned and unburned longleaf pine stands, the Jones Center at Ichauway, Southwest Georgia, USA, 2015 - 2021

description: This data package includes data tables used to assemble a stand-level water budget of the longleaf pine-wiregrass ecosystem in southwestern Georgia, USA, between 2015 and 2021. Water budgets were estimated by measuring or modeling each distinct water budget component. Thus, the data tables included in the package are generally divided by stratum (i.e. overstory, midstory, vegetative groundcover, litter layer) and/or process (i.e. evaporation or transpiration). Relevant forest structure data is also included; they are often presented in tables alongside estimates of transpiration. Much of the data were collected across a soil moisture gradient, at both mesic and xeric sites, and in stands treated with different fire regimes: frequent prescribed fire (FF) or fire exclusion (EX). For some data, site or treatment may not be specified if the data were not collected for comparative purposes, but rather as representative baseline data for models that would be applied across sites and treatments.
 Transpiration data contained within this package include: 
 1) seasonal averages of daily sap-flux for pines and oaks measured with thermal dissipation probes 
 2) daily and seasonal transpiration for individual trees 
 3) seasonal transpiration for functional groups of shrubs and small trees 
 4) seasonal transpiration of groundcover functional groups 
 Evaporation data contained within this package include:
 1) Continuously-measured canopy interception and throughfall
 2) overstory stemflow
 3) midstory stemflow 
 3) groundcover interception and throughfall
 4) litter moisture content data paired with time since rain (to develop litter drying curves), and
 5) litter moisture content data paired with recent rain event depth (to develop litter wetting curves)
 Forest structure data contained within this package include:
 1) Annual measures of tree DBH
 2) Biannual estimates of small tree and shrub DBH, by functional group
 3) Monthly estimates of groundcover functional group leaf area index
 4) Monthly measures of litter biomass and water content
DOI: 10.6084/m9.figshare.27313539
title: Supplementary Material for: Efficacy and safety of immune checkpoint inhibitors combined with chemotherapy or tyrosine kinase inhibitors in advanced endometrial cancer: A systematic review and meta-analysis

description: Objective: The objective of this meta-analysis was to conduct a comprehensive assessment of the therapeutic effectiveness and safety profile of the combination of immune checkpoint inhibitors (ICIs) with either chemotherapy or tyrosine kinase inhibitors (TKIs) in the treatment of advanced-stage endometrial cancer (EC).
Methods: This meta-analysis conducted a thorough literature search across PubMed, Cochrane Library, Embase, and Web of Science databases from their earliest records up to November 18th, 2023, identifying qualified randomized controlled trials (RCTs), cohort studies, and single-arm trials for inclusion in the analysis. The meta-analysis were performed to quantify and analyzed the evidence from the existing literature, focusing on outcomes including the objective response rate (ORR), disease control rate (DCR), duration of response (DOR), overall survival (OS), progression-free survival (PFS), and adverse events (AE).
Results: A total of 13 studies were included. In terms of ICI combined with chemotherapy, the single-arm trials showed that ICI combined with chemotherapy was effective in improving the ORR, but the overall rate of AE was higher. The results based on RCT suggested that ICI combined with chemotherapy resulted in a longer PFS of 12-24 months and OS of 18-month compared to the control group in advanced EC. In terms of ICI combined with TKI, the pooled ORR was 39.0%, the pooled DCR was 79.9%, the pooled OS rate was 50.4%, and the pooled overall AE rate was 95.8%, the pooled grade ≥3 AE rate was 73.8%, the pooled median progression-free survival (mPFS) was 6.126 months, and pooled OS was 15.099 months in advanced EC.
Conclusions: The integrative therapeutic approach combining (ICIs) with chemotherapy or (TKIs demonstrates notable clinical efficacy in advanced EC, which can prolong the survival and help to disease control. Nevertheless, it is imperative for clinicians to be vigilant regarding the potential for adverse reactions to emerge. In addition, more RCTs are needed to solidify this study's efficacy and safety further.
DOI: 10.1285/i22390359v33p171
title: Realtà e virtualità dell'apprendimento di una L2 con tecnologie mobili

description: Digital technologies, particularly those employed for mobile learning, drive users to perform actions that are key contributions to the learning process. Thanks to the employment of electronic devices, including those small and handy such as smartphones and tablets, learning and teaching move from being virtual to concrete processes in the development of L2 skills. This paper describes some major characteristics of portable devices and their increasingly pervasive multiple uses. Furthermore, it illustrates mobile learning by focusing on its strongly innovative pedagogical implications: a new notion of context, which is no longer a physical space in which learning takes place; the re-interpretation of the bipolar distinction between formal and informal learning; the pro-active role of learners, who can choose where, what and when to study; and finally the notion of 'delocalized community' as an agent of learning. This process of innovation and 'materialization' of learning is supported by the growing number of Educational Apps, which they have become increasingly specialized, each of them reflecting more or less innovative pedagogical designs. The spectrum varies from those proposing rote memorization of vocabulary or structural grammar exercises to more creative ones which allow learners to upload digital assets and exchange them online with other people around the world. The former reflect a behaviourist view of learning, the latter a post-costructivist and more learner-centered approach. As an example of the more innovative ones, this paper describes a recently developed App, called Linguacuisine. Finally, the paper suggests that, in order to highlight the 'materiality' of mobile learning, it is time to avoid using labels such as 'virtual exchange' when referring to events of asynchronous and synchronous communication, and prefer labels such as 'telecollaboration, online exchanges'. Recognizing 'materiality' to actions triggered by the use of technologies in learning implies questioning the potential of digital resources, managing learning needs and processes, becoming aware of the wide-reaching change in learning conditions and attitudes, and directing innovation so as to achieve maximum outcomes.
DOI: 10.17632/mf8rbjzwmw.2
title: Constants of anisotropic elasticity up to the 6th order of nonlinearity: rotational transformations, symmetries, and averages for all crystal classes, isotropy, and transverse isotropy

description: Symbolically computed expressions for high-order nonlinear anisotropic elastic constants in the Voigt notation (linear 2nd-order constants cij, and non-linear orders from 3 to 6: cijk, cijkl, cijklm, cijklmn, where i,j,k,l,m,n = 1,...,6, and only unique components with i&lt;=j&lt;=k&lt;=l&lt;=m&lt;=n are considered). The dataset consists of: Appendix A: Symmetry relationships between the constants for all 32 crystal classes (falling into only 11 distinctive classes by elastic behavior), as well as for 2 non-crystalline symmetries: isotropic and transversely isotropic (cylindrical). Appendix B: Rotational averages of the generally anisotropic constants to any of the symmetries mentioned above (a generalization of the Voigt average to nonlinearity and to goal symmetries other than isotropic). This can be used to reduce the number of constants by approximating low-symmetry materials with higher symmetry. Appendix C: Transformations of the constants under arbitrary rotation of the system of coordinates with the rotation matrix R with elements Rij, where i,j = 1,2,3. Version 2 changelog: In Version 1, expressions for averages for the Tetragonal-II symmetry in Appendix B were for a non-standard crystal orientation (rotated by pi/4 about Z-axis from the standard orientation, now corrected), while the corresponding independent constants and symmetry relations in Appendix A remain correct.