cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25729965
title: Measurements of Dinosorex dentognathic elements - Cailleux et al., 2024, S1.xlsx

description: This file consists of a list of dental elements attributed to the family Heterosoricidae, from the Middle (DNV – Bonanza) and Late Miocene (Borský Svätý Jur, Studienka and Pezinok) of Slovakia. Each line represents a different dental element.The described material from DNV – Bonanza is housed at the Natural History Museum of Bratislava, Slovakia. The material from Borský Svätý Jur, Studienka and Pezinok are housed at the Department of Geology and Paleontology of Comenius University, Bratislava, Slovakia.Additionally is provided the locality where each material has been extracted, its identification (i=incisor, c=canine, a=antemolar, m=molar, mand.=mandible; Upper elements are indicated with uppercase), its symmetry (l=left, r=right) and its generic and specific attribution.The file gather the measurements of the specimens, the protocol of which has been described in the main document. The abbreviations are: AW, anterior width; BL, labial length; H, height; L, length; LL, lingual length; LT, length of the talon; PW, posterior width; TAW, talonid width; TRW, trigonid width; W, width. All measurements are expressed in millimeters and rounded up to the nearest hundredth.
DOI: 10.6084/m9.figshare.25729965.v1
title: Measurements of Dinosorex dentognathic elements - Cailleux et al., 2024, S1.xlsx

description: This file consists of a list of dental elements attributed to the family Heterosoricidae, from the Middle (DNV – Bonanza) and Late Miocene (Borský Svätý Jur, Studienka and Pezinok) of Slovakia. Each line represents a different dental element.The described material from DNV – Bonanza is housed at the Natural History Museum of Bratislava, Slovakia. The material from Borský Svätý Jur, Studienka and Pezinok are housed at the Department of Geology and Paleontology of Comenius University, Bratislava, Slovakia.Additionally is provided the locality where each material has been extracted, its identification (i=incisor, c=canine, a=antemolar, m=molar, mand.=mandible; Upper elements are indicated with uppercase), its symmetry (l=left, r=right) and its generic and specific attribution.The file gather the measurements of the specimens, the protocol of which has been described in the main document. The abbreviations are: AW, anterior width; BL, labial length; H, height; L, length; LL, lingual length; LT, length of the talon; PW, posterior width; TAW, talonid width; TRW, trigonid width; W, width. All measurements are expressed in millimeters and rounded up to the nearest hundredth.
DOI: 10.6084/m9.figshare.25017915
title: Additional file 2 of Genomic data integration tutorial, a plant case study

description: Additional file 2: Supplementary Table 1. 39 R tools for multi-omics data integration. Supplementary Table 2. Gene annotation of 'no-denoised' and 'denoised' candidate genes. Annotation information have been retrieved from PlantGenIE (https://plantgenie.org/) with Populus trichocarpa v3.1 as a reference. The column ‘common_before_and_after_denoising’ indicates whether the gene is shared between 'denoised' and 'no-denoised' data or not (TRUE/FALSE).
DOI: 10.6084/m9.figshare.25017915.v1
title: Additional file 2 of Genomic data integration tutorial, a plant case study

description: Additional file 2: Supplementary Table 1. 39 R tools for multi-omics data integration. Supplementary Table 2. Gene annotation of 'no-denoised' and 'denoised' candidate genes. Annotation information have been retrieved from PlantGenIE (https://plantgenie.org/) with Populus trichocarpa v3.1 as a reference. The column ‘common_before_and_after_denoising’ indicates whether the gene is shared between 'denoised' and 'no-denoised' data or not (TRUE/FALSE).
DOI: 10.6084/m9.figshare.25034406
title: Additional file 1 of Immunogram defines four cancer-immunity cycle phenotypes with distinct clonal selection patterns across solid tumors

description: Additional file 1: Table S1. Summary of immunogram subtype for each analyzed tumor in TCGA cohort. Related to Fig. 1. Table S2. Summary of clinical information for each analyzed tumor in TCGA cohort. Related to Fig. 1. Table S3. Summary of clinical information and immunogram subtype for each analyzed tumor in IMvigor210 cohort. Related to Fig. 6. Table S4. Summary of clinical information and immunogram subtype for each analyzed tumor in metastatic gastric cancer cohort. Related to Figure S7. Table S5. Summary of clinical information and immunogram subtype for each analyzed tumor in LIRI-JP cohort. Related to Additional file 2: Fig S1 Table S5 Summary of clinical information andimmunogram subtype for each analyzed tumor in metastatic gastric cancer cohort. Related to Additional file 9: Fig. S8.
DOI: 10.6084/m9.figshare.25034406.v1
title: Additional file 1 of Immunogram defines four cancer-immunity cycle phenotypes with distinct clonal selection patterns across solid tumors

description: Additional file 1: Table S1. Summary of immunogram subtype for each analyzed tumor in TCGA cohort. Related to Fig. 1. Table S2. Summary of clinical information for each analyzed tumor in TCGA cohort. Related to Fig. 1. Table S3. Summary of clinical information and immunogram subtype for each analyzed tumor in IMvigor210 cohort. Related to Fig. 6. Table S4. Summary of clinical information and immunogram subtype for each analyzed tumor in metastatic gastric cancer cohort. Related to Figure S7. Table S5. Summary of clinical information and immunogram subtype for each analyzed tumor in LIRI-JP cohort. Related to Additional file 2: Fig S1 Table S5 Summary of clinical information andimmunogram subtype for each analyzed tumor in metastatic gastric cancer cohort. Related to Additional file 9: Fig. S8.
DOI: 10.6084/m9.figshare.25017793
title: Additional file 1 of Splenic monocytes drive pathogenic subretinal inflammation in age-related macular degeneration

description: Additional file 1: Table S1. Fold Changes (FC) of the 70 genes upregulated between SplMo and BMMo in scRNAseq experiment. The frequency of Ly6C+Mos in the spleen, in sham Eye and SpleX eye represents the percentage of cells with an expression level &gt; 0 for the selected gene in scRNAseq among the total of Ly6C+Mos in each organ. The Ratio %age Sham vs SpleX eye is the ratio of frequency of Ly6C+Mos in Sham to frequency of Ly6C+Mos in SpleX eye. In red, genes of the spleMdC signature.
DOI: 10.6084/m9.figshare.25017793.v1
title: Additional file 1 of Splenic monocytes drive pathogenic subretinal inflammation in age-related macular degeneration

description: Additional file 1: Table S1. Fold Changes (FC) of the 70 genes upregulated between SplMo and BMMo in scRNAseq experiment. The frequency of Ly6C+Mos in the spleen, in sham Eye and SpleX eye represents the percentage of cells with an expression level &gt; 0 for the selected gene in scRNAseq among the total of Ly6C+Mos in each organ. The Ratio %age Sham vs SpleX eye is the ratio of frequency of Ly6C+Mos in Sham to frequency of Ly6C+Mos in SpleX eye. In red, genes of the spleMdC signature.
DOI: 10.6084/m9.figshare.25017933
title: Additional file 2 of Splenic monocytes drive pathogenic subretinal inflammation in age-related macular degeneration

description: Additional file 2: Table S2. 195 up-regulated genes and 5 down-regulated genes in MPs expressing the spleMdC signature compared to all other MPs in laser-injured eyes.
DOI: 10.6084/m9.figshare.25017933.v1
title: Additional file 2 of Splenic monocytes drive pathogenic subretinal inflammation in age-related macular degeneration

description: Additional file 2: Table S2. 195 up-regulated genes and 5 down-regulated genes in MPs expressing the spleMdC signature compared to all other MPs in laser-injured eyes.
DOI: 10.21227/9x05-q686
title: Advanced Feature Extraction Tool for Power Quality Disturbances Using Discrete Wavelet Transform and Multi-Resolution Analysis

description: The DWT MRA Feature Extraction App is a specialized tool designed for extracting statistical features from power quality disturbance (PQD) signals using Discrete Wavelet Transform (DWT) and Multi-Resolution Analysis (MRA). Researchers can import PQD data and select the desired mother wavelet and level of decomposition to perform wavelet-based analysis. The app allows users to extract a comprehensive set of statistical features, such as mean, standard deviation, skewness, kurtosis, and energy, from the wavelet coefficients. Additionally, users can choose to normalize or standardize these features before exporting them for further analysis or machine learning classification. This app streamlines the feature extraction process, offering a powerful, no-code solution for detailed PQD signal analysis.
DOI: 10.6084/m9.figshare.25017854
title: Additional file 1 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 1: Table S1. The basic information of 8 newly sequenced chloroplast genomes in family Costaceae
DOI: 10.6084/m9.figshare.25017854.v1
title: Additional file 1 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 1: Table S1. The basic information of 8 newly sequenced chloroplast genomes in family Costaceae
DOI: 10.6084/m9.figshare.25017942
title: Additional file 2 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 2: Table S2. Genes distribution in 13 Costaceae complete chloroplast genomes
DOI: 10.6084/m9.figshare.25017942.v1
title: Additional file 2 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 2: Table S2. Genes distribution in 13 Costaceae complete chloroplast genomes
DOI: 10.6084/m9.figshare.26668737
title: Additional file 3 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 3: Table S3. Comparison of the long repeats among 13 Costaceae complete chloroplast genomes
DOI: 10.6084/m9.figshare.26668737.v1
title: Additional file 3 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 3: Table S3. Comparison of the long repeats among 13 Costaceae complete chloroplast genomes
DOI: 10.6084/m9.figshare.26668740
title: Additional file 4 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 4: Table S4. Statistics of simple sequence repeats (SSRs) sequences distribution and designed primers in 13 Costaceae complete chloroplast genomes
DOI: 10.6084/m9.figshare.26668740.v1
title: Additional file 4 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 4: Table S4. Statistics of simple sequence repeats (SSRs) sequences distribution and designed primers in 13 Costaceae complete chloroplast genomes
DOI: 10.6084/m9.figshare.26668743
title: Additional file 5 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 5: Table S5. Codon usages of all protein coding genes in 13 Costaceae complete chloroplast genomes
DOI: 10.6084/m9.figshare.26668743.v1
title: Additional file 5 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 5: Table S5. Codon usages of all protein coding genes in 13 Costaceae complete chloroplast genomes
DOI: 10.6084/m9.figshare.26668749
title: Additional file 7 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 7: Fasta form of 14 divergent regions and 4 universal chloroplast DNA markers sequences from 13 species/accessions of Costaceae
DOI: 10.6084/m9.figshare.26668749.v1
title: Additional file 7 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 7: Fasta form of 14 divergent regions and 4 universal chloroplast DNA markers sequences from 13 species/accessions of Costaceae
DOI: 10.6084/m9.figshare.26668752
title: Additional file 8 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 8: Table S7. Information of chloroplast genomes sequences used in present phylogenetic analyses
DOI: 10.6084/m9.figshare.26668752.v1
title: Additional file 8 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 8: Table S7. Information of chloroplast genomes sequences used in present phylogenetic analyses
DOI: 10.6084/m9.figshare.26668758
title: Additional file 10 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 10: Table S8. Information of chloroplast genomes sequences used in divergence time estimation
DOI: 10.6084/m9.figshare.26668758.v1
title: Additional file 10 of Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships

description: Supplementary Material 10: Table S8. Information of chloroplast genomes sequences used in divergence time estimation
DOI: 10.6084/m9.figshare.25017760
title: Additional file 1 of Combined transcriptome and metabolome analysis reveals breed-specific regulatory mechanisms in Dorper and Tan sheep

description: Additional file 1: Table S1. Rawdata and map summary.
DOI: 10.6084/m9.figshare.25017760.v1
title: Additional file 1 of Combined transcriptome and metabolome analysis reveals breed-specific regulatory mechanisms in Dorper and Tan sheep

description: Additional file 1: Table S1. Rawdata and map summary.
DOI: 10.15468/dl.whtytp
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "StateProvince is one of (valle del cauca)",
 "TaxonKey is one of (Dinomys branickii Peters, 1873)"
 ]
 }
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127219-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z3uefz
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Antithamnion antillanum Børgesen"
 ]
}

 The dataset includes 190 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110391-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3398q8
title: Occurrence Download

description: A dataset containing 1688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Venezuela (Bolivarian Republic of)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pipridae"
 ]
}

 The dataset includes 1688 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110423-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4y8k5
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agaricus sylvaticus Schaeff.",
 "Year 2022-2022"
 ]
}

 The dataset includes 74 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110382-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2frre
title: Occurrence Download

description: A dataset containing 484 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ctenotus hanloni Storr, 1980)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 484 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033200-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e94859
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ctenotus halysis Horner, 2009)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033188-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vc3w9n
title: Occurrence Download

description: A dataset containing 199 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Botryocladia leptopoda (J.Agardh) Kylin, 1931"
 ]
}

 The dataset includes 199 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110468-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsvgbr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Angraecum rigidifolium H.Perrier"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033222-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.puhefy
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-104.6229476000000034 38.2219983999999968, -104.6229476000000034 38.2244954000000021, -104.6229476000000034 38.2263114000000002, -104.6229476000000034 38.2279004000000029, -104.6229476000000034 38.2310784000000012, -104.6229476000000034 38.2334619000000018, -104.6229476000000034 38.2353913999999975, -104.6229476000000034 38.2380019000000004, -104.6229476000000034 38.2399314000000032, -104.6229476000000034 38.2423148999999967, -104.6229476000000034 38.2437904000000017, -104.6229476000000034 38.2454929000000021, -104.6229476000000034 38.2483304000000004, -104.6229476000000034 38.2506004000000033, -104.6229476000000034 38.2527569000000014, -104.6229476000000034 38.2538918999999993, -104.6212467299999958 38.2538918999999993, -104.6184119600000031 38.2538918999999993, -104.6163709199999943 38.2538918999999993, -104.6146700599999946 38.2538918999999993, -104.6116085000000027 38.2538918999999993, -104.6116085000000027 38.2516219000000035, -104.6116085000000027 38.2488979000000029, -104.6116085000000027 38.2473089000000002, -104.6116085000000027 38.2453793999999974, -104.6116085000000027 38.2422013999999990, -104.6116085000000027 38.2402719000000033, -104.6116085000000027 38.2387963999999982, -104.6116085000000027 38.2364128999999977, -104.6116085000000027 38.2338024000000019, -104.6116085000000027 38.2322133999999991, -104.6116085000000027 38.2298298999999986, -104.6116085000000027 38.2280139000000005, -104.6116085000000027 38.2254033999999976, -104.6116085000000027 38.2231334000000018, -104.6116085000000027 38.2219983999999968, -104.6142164900000040 38.2219983999999968, -104.6165976999999998 38.2219983999999968, -104.6202262200000064 38.2219983999999968, -104.6229476000000034 38.2219983999999968))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 103 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081764-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sp8ggf
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gonocephalus abbotti Cochran, 1922)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033236-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6eqc5
title: Occurrence Download

description: A dataset containing 875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Petalostylis cassioides (F.Muell.) Symon, Petalostylis spinescens E.Pritz.)"
 ]
}

 The dataset includes 875 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102639-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4sfmsd
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Atractus major Boulenger, 1894, Attacus major Dusuzeau & Sonthonnax, 1897)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 145 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033164-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jawtc5
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bothrops oligolepis (Werner, 1901)"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008257-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.