cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.h6q26/3
title: complete_alignment

description: Alignment used in the Bayesian inference analysis to create the phylogenetic tree used in the comparative method. Sequences originally published in Baker R.H., G. S. Wilkinson, and R. DeSalle. 2001. Phylogenetic utility of different types of molecular data used to infer evolutionary relationships among stalk-eyed flies (Diopsidae). Systematic Biology 50: 87-105. All sequences are available in GenBank.
DOI: 10.5061/dryad.js957/1
title: Morphological Measurements of Bythotrephes in Canadian Shield Lakes
DOI: 10.5061/dryad.ms06b/1
title: simulation_data

description: Parameter values and summary data for each of the 240 food webs simulated using the evolutionary assembly model and analyzed in the present paper and in Ingram et al. (2009).
DOI: 10.5061/dryad.n11s7/1
title: Individual clutch sizes and body length

description: The collembolans are maintained in the laboratory in polyethylene vials (diameter 52mm, height 65mm) filled with a 30 mm width layer of a plaster of Paris mixed with Indian ink to facilitate detection of the individuals. Food is provided weekly in the form of small dried pellets of a mixture of agar and dried yeast in standardized concentration and volume (Tully and Ferrière, 2008). The rearing boxes are maintained in incubators at 21+/-0.5°C and the plaster is kept wet to have a constant humidity within the boxes (~100% RH). We monitored 220 isolated individuals and regularly measured their body size and fecundity (clutch sizes).
DOI: 10.5061/dryad.n11s7/2
title: Individual growth trajectories

description: The collembolans are maintained in the laboratory in polyethylene vials (diameter 52mm, height 65mm) filled with a 30 mm width layer of a plaster of Paris mixed with Indian ink to facilitate detection of the individuals. Food is provided weekly in the form of small dried pellets of a mixture of agar and dried yeast in standardized concentration and volume (Tully and Ferrière, 2008). The rearing boxes are maintained in incubators at 21+/-0.5°C and the plaster is kept wet to have a constant humidity within the boxes (~100% RH). We monitored 220 isolated individuals and regularly measured their body size and fecundity (clutch sizes).
DOI: 10.5061/dryad.n11s7/3
title: Time series of population plotted in Figure 5

description: The collembolans are maintained in the laboratory in polyethylene vials (diameter 52mm, height 65mm) filled with a 30 mm width layer of a plaster of Paris mixed with Indian ink to facilitate detection of the individuals. Food is provided weekly in the form of small dried pellets of a mixture of agar and dried yeast in standardized concentration and volume. Data gives the body length and date of measurement for each individual for the whole time series.
DOI: 10.5061/dryad.n2582/1
title: Clones_Fitness_Data

description: Results of competition experiments designed to estimate fitness of evolved E. coli clones relative to their common ancestor
DOI: 10.5061/dryad.n2582/2
title: Populations_Fitness_Data

description: Results of competition experiments designed to estimate the fitness of evolving E. coli populations relative to their common ancestor
DOI: 10.5061/dryad.n2fb2/1
title: Stylophora sequence files for Dryad

description: Aligned sequence files used for phylogeny analysis. ReadMe files also included.
DOI: 10.5061/dryad.nh30v/1
title: Appendix 1

description: Three sympatry matrices used in the network analysis of 72 species of red oaks.
DOI: 10.5061/dryad.ph920/1
title: Contatenation of the 13 mitochondrial proteins for 38 deuterostomes in nexus format

description: Ambiguously aligned sites have been excluded using TrimAl.
DOI: 10.5061/dryad.ph920/2
title: Bayesian consensus tree obtained from the contatenation of 13 mitochondrial proteins for 38 deuterostomes under the CAT-GTR+G mixture model

description: Phylogeny of Deuterosomes inferred from the concatenation of the 13 mitochondrial proteins.Bayesian consensus tree of 4 independent MCMC runs obtained using the CAT+GTR+G mixture model (38taxa and 3,038 amino-acid sites). Values at nodes correspond to Bayesian posterior probabilities (PP).
DOI: 10.5061/dryad.pv24v/3
title: Fst
DOI: 10.5061/dryad.pv24v/4
title: Consensus_sequences_RADs
DOI: 10.5061/dryad.pv24v/5
title: Consensus_sequences
DOI: 10.5061/dryad.pv24v/6
title: Frequency
DOI: 10.5061/dryad.pv24v/7
title: Consensus_sequences_RADs-2

description: This fasta file contains consensus sequences derived from RADs genotyping of neutral loci in 29 S. lautus populations and the close relative S. madagascariensis. These sequences were used to construct the rooted phylogeny presented in Figure 2B of the manuscript.
DOI: 10.5061/dryad.q31f8/3
title: Arlq_cr_populations

description: Arlequin input files with population grouping for control region data.
DOI: 10.5061/dryad.rd45qj52/1
title: DRD4 polymorphism and EBC in greater flamingos

description: Original data set from which analyses were carried out
DOI: 10.5061/dryad.sc193/10
title: High resolution Fig. 11
DOI: 10.5061/dryad.sc193/11
title: High resolution Fig. 12
DOI: 10.5061/dryad.sc193/12
title: High resolution Fig. 13
DOI: 10.5061/dryad.sc193/13
title: High resolution Fig. 14
DOI: 10.5061/dryad.sc193/14
title: High resolution Fig. 15
DOI: 10.5061/dryad.sc193/15
title: High resolution Fig. 16
DOI: 10.5061/dryad.sc193/9
title: High resolution Fig. 10
DOI: 10.5061/dryad.sd080/4
title: birds-416-loci-alignments.tar.gz

description: Nexus formatted, complete (all taxa have data at all loci) alignments of 416 UCE loci enriched from birds.
DOI: 10.5061/dryad.sh3m0/1
title: Shirleyetal_Mecistopssystematics_CpDi13

description: Mecistops and outgroup sequences for nuclear marker CpDi13.  See text file "Shirleyetal_Mecistopssystematics_OTUexplanations.txt" for OTU codes.  Refer to Methods text for other relevant details.
DOI: 10.5061/dryad.sm7p8/1
title: (Figure1) Photosynthesis (measured as oxygen evolution rates) for 16 Ostreococcus ecotypes at ambient and elevated pCO2

description: This file contains oxygen evolution data per cell per hour for all ecotypes in both CO2 treatments as measured with a Clark-type electrode. Note that these are means for biological (n=3-6) and technical (n=3) replicates. Also, the ppm CO2 given are the pCO2 we aimed to reach. For the actual values and detailed carbonate chemistry, please see our SI files, which are available from nature climate change.
DOI: 10.5061/dryad.sm7p8/2
title: (Figure1)Growth rates of 16 Ostreococcus ecotypes at ambient and elevated CO2 levels

description: This file contains growth rate data for 16 Ostreococcus ecotypes, measured as OD and verified on an Accuri (AWI) and a FACS Calibur (Edinburgh) flow cytometre.
DOI: 10.5061/dryad.sm7p8/3
title: (Figure1) CN ratio of five representative ecotypes of Ostreococcus at ambient and elevated pCO2 levels

description: This file contains CN ratios, as measured through combustion, for five representative ecotypes of Ostreococcus. There were at least three biological and three technical replicates of each ecotype.
DOI: 10.5061/dryad.sm7p8/4
title: (Figure1) Cell size of 16 Ostreococcus ecotypes at ambient and elevated pCO2 levels

description: Cell size of Ostreococcus was measured in relation to calibration beads using an Accuri (AWI) and a FACS Calibur flow cytometre. This file already contains the standard error (calculated as standard deviation divided by square root of number of replicates)
DOI: 10.5061/dryad.vj4f7/3
title: Khanshour et al_SupMat_Figure S3

description: The FCA among all populations except the PZ (as generated by GENETIX). Each population was represented by its center of gravity point into 3D plot. Axis 1 accounts for 24.20% of the variation. Population abbreviations are found Table 1. The percentage of variance explained by each axis is found in the axes labels.
DOI: 10.5061/dryad.14214/4
title: Cymbidium_Introns and spacers
DOI: 10.5061/dryad.20r9k/1
title: filter_on_Q

description: Filtering script
DOI: 10.5061/dryad.2cb46/3
title: carnivoreSizeKG

description: data file of Carnivora body sizes
DOI: 10.5061/dryad.370nq/1
title: PCR1

description: PCR1 mix: Bulk sample constituted from 30 diatoms strains corresponding to 12 genera and 21 species. 30 PCR products were mixed in varying molar proportions ranging from 0.1% to 8.8%. Then product of 3 markers (SSU rDNA, rbcL and cox1) were pooled in equimolar concentration. Fragmented PCR products were then sequenced in one random direction on a Roche GS FLX with Titanium chemistry on a GS FLX Titanium PicoTiterPlate 454 (Roche) at the Genomic Platform of Genopole Toulouse/Midi-Pyrenees
DOI: 10.5061/dryad.3tr8d/1
title: Pregnancy Database 23-8-12

description: SPSS file containing complete study data obtained from first and second questionnaires, as well as data obtained from clinical records. The two study questionnaires are included as a separate file. Question numbers correspond to column numbers in SPSS.
DOI: 10.5061/dryad.50dc6/3
title: Individual of Crella elegans with larvae in its tissue

description: Individual collected by SCUBA on October'09 and fixed in RNAlater. Assembled with CLC Genomics Workbench 4.6.1 (CLC bio, Aarhus, Denmark).
DOI: 10.5061/dryad.5c6v7/10
title: Tree file for PAML - 3

description: Tree file for PAML's Branch-Site Model A, testing for selection in sites along Branch D in Figure 2 (Table 3).
DOI: 10.5061/dryad.5c6v7/11
title: Control file for PAML Branch-Site Null Model

description: Control file for PAML's null Branch-site Model A testing for selection along Branch D in Figure 2 (Table 3).
DOI: 10.5061/dryad.5c6v7/12
title: PAML control file - Free Ratio

description: Control file for PAML's Free-Ratios model (Table 1)
DOI: 10.5061/dryad.5c6v7/2
title: Fig4- Pike real time data

description: Gene expression of Na+, K+ ATPase paralogs and 18S in the Northern Pike (Esox lucius)
DOI: 10.5061/dryad.5c6v7/4
title: Supplementary Figure 2

description: Teleost Na+, K+ ATPase α1 (ATP1A1) gene tree reconstructed using the maximum likelihood (ML) method with RAxML software version 7.2.7 (Stamatakis 2006) and the GTR+Γ model of nucleotide evolution.
DOI: 10.5061/dryad.5c6v7/5
title: Tree file for PAML

description: Tree file to be used with the one and free ratios models in PAML (Table 1, Test 1a).
DOI: 10.5061/dryad.5c6v7/6
title: Control file for PAML - Branch Model

description: Control file for PAML branch model to test for selection along Branch D of Fig.2 (Table 1).
DOI: 10.5061/dryad.5c6v7/7
title: Tree file for PAML - 2

description: Tree file for PAML's Branch-Site Model A (testing for selection along Branch D of Fig.2. Table 3)
DOI: 10.5061/dryad.5c6v7/8
title: Control file for PAML - Branch Null Model

description: Control file for the null PAML Branch Model testing for selection along Branch D in Figure 2 (Table 1).
DOI: 10.5061/dryad.5c6v7/9
title: Control file for PAML - Branch-Sites Model

description: Control file for PAML`to run Branch-sites Model A along branch D in Figure 2 (Table 3).
DOI: 10.5061/dryad.62p02/1
title: Fragment 1 (N terminal domain)

description: Alignment of TPS genes for N terminal domain.  Alignment is in frame +1
DOI: 10.5061/dryad.62p02/2
title: Fragment 2 (C terminal domain)

description: Alignment of TPS genes for C terminal domain.  Alignment is in frame +1
DOI: 10.5061/dryad.722qb/1
title: Supp Info Table 1 dataset

description: Data file for PCR success, allelic dropout, and false allele rates for pygmy rabbit (Brachylagus idahoensis) faecal pellet DNA. Pellets were collected in the field in central Washington, USA and analyzed at the Laboratory for Ecological, Evolutionary and Conservation Genetics, University of Idaho, Moscow, ID, USA. Column headings are included in the first sheet of the workbook.
DOI: 10.5061/dryad.74j5g/3
title: Online Appendix 3

description: PCR Primers
DOI: 10.5061/dryad.8kk12/12
title: Proteome_t22

description: Protein-level quantitative proteomics data (protXML format) of the diel proteome of Prochlorococcus MED4 for timepoint 22 hours. Includes peptide-spectrum matches generated by X!Tandem, OMSSA and Myrimatch (and combined with iProphet), and 15N-labeling-based quantifications performed with ASAPratio.
DOI: 10.5061/dryad.8kk12/18
title: RNAseq_t6

description: RNA-sequencing transcriptomics data of the diel cell cycle of Prochlorococcus MED4 for timepoint 6 hours.  The compressed tar archive includes a Maq mapping file and pileup alignment.
DOI: 10.5061/dryad.8ps58rp2/10
title: TCM_018

description: Plant Sequences from Traditional Chinese Medicine Sample No. 18
DOI: 10.5061/dryad.8ps58rp2/3
title: TCM_003
DOI: 10.5061/dryad.8ps58rp2/4
title: TCM_004

description: Plant Sequences from Traditional Chinese Medicine Sample No. 4
DOI: 10.5061/dryad.8ps58rp2/5
title: TCM_006

description: Animal and Plant Sequences from Traditional Chinese Medicine Sample No. 6
DOI: 10.5061/dryad.8ps58rp2/6
title: TCM_011

description: Animal and Plant Sequences from Traditional Chinese Medicine Sample No. 11
DOI: 10.5061/dryad.8ps58rp2/7
title: TCM_013

description: Plant Sequences from Traditional Chinese Medicine Sample No. 13
DOI: 10.5061/dryad.8ps58rp2/8
title: TCM_015

description: Animal Sequences from Traditional Chinese Medicine Sample No. 15
DOI: 10.5061/dryad.8ps58rp2/9
title: TCM_016

description: Animal and Plant Sequences from Traditional Chinese Medicine Sample No. 16
DOI: 10.5061/dryad.d41v4/15
title: Paired healthy sample, patient 5, 16S rRNA sequences

description: Bacterial 16S rRNA sequences from patient 5 healthy periodontal sites. Sequences are read 1 and read 2 from MiSeq sequencing joined with the script fastq-join.
DOI: 10.5061/dryad.d41v4/16
title: Paired healthy sample, patient 6, 16S rRNA sequences

description: Bacterial 16S rRNA sequences from patient 6 healthy periodontal sites. Sequences are read 1 and read 2 from MiSeq sequencing joined with the script fastq-join.
DOI: 10.5061/dryad.d41v4/17
title: Paired healthy sample, patient 7, 16S rRNA sequences

description: Bacterial 16S rRNA sequences from patient 7 healthy periodontal sites. Sequences are read 1 and read 2 from MiSeq sequencing joined with the script fastq-join.
DOI: 10.5061/dryad.d41v4/18
title: Paired healthy sample, patient 8, 16S rRNA sequences

description: Bacterial 16S rRNA sequences from patient 8 healthy periodontal sites. Sequences are read 1 and read 2 from MiSeq sequencing joined with the script fastq-join.
DOI: 10.5061/dryad.d41v4/19
title: Paired healthy sample, patient 9, 16S rRNA sequences

description: Bacterial 16S rRNA sequences from patient 9 healthy periodontal sites. Sequences are read 1 and read 2 from MiSeq sequencing joined with the script fastq-join.
DOI: 10.5061/dryad.d41v4/20
title: Paired healthy sample, patient 10, 16S rRNA sequences

description: Bacterial 16S rRNA sequences from patient 10 healthy periodontal sites. Sequences are read 1 and read 2 from MiSeq sequencing joined with the script fastq-join.
DOI: 10.5061/dryad.d4g94/1
title: Morphological measurements of Galapagos finches (Geospiza fuliginosa), 2000-2005

description: See the ReadMe file.
DOI: 10.5061/dryad.dn367/2
title: Relative growth of spiteful cooperators competed against sensitive cooperators
DOI: 10.5061/dryad.g4n13/21
title: Site07-03
DOI: 10.5061/dryad.g4n13/23
title: Site08-02
DOI: 10.5061/dryad.g4n13/24
title: Site08-03
DOI: 10.5061/dryad.g4n13/25
title: Site09-01
DOI: 10.5061/dryad.hj7h2/5
title: Valisia malayana humidity

description: Survival data for Valisia malayana, pollinator of F. grossularioides from temperature from 32 to 38 degree celsius at 60% and 85% relative humidity.
DOI: 10.5061/dryad.hj7h2/6
title: 6 syconia Valisia malayana

description: Survival data for Valisia malayana, pollinator of F. grossularioides from 6 syconia at 28 degree celsius and 85% relative humidity.
DOI: 10.5061/dryad.hj7h2/7
title: 4 within C. appendiculatus

description: Survival data for C. appendiculatus, pollinator of F. variegata from 4 syconia at 28 degree celsius and 85% relative humidity.
DOI: 10.5061/dryad.hj7h2/8
title: 2 within C. hewitti

description: Survival data for C. hewitti, pollinator of F. fistulosa from 2 syconia at 28 degree celsius and 85% relative humidity.
DOI: 10.5061/dryad.j5240/1
title: BDNF fasta alignment

description: Alignments of BDNF gene. Sequences are identified as haplotype number (see article text for more details) and GenBank number.
DOI: 10.5061/dryad.j5240/5
title: Rag2 fasta alignment

description: Alignments of Rag2 gene. Sequences are identified as haplotype (see article text for more details) and GenBank number.
DOI: 10.5061/dryad.j5240/6
title: Individual-by-individual sequence information

description: The table describes which GenBank accessions numbers came from each individual (smaller database, see article's SI Tab3).
DOI: 10.5061/dryad.k4m41/3
title: Plant and fungal trait measurements

description: This file contains the measurements of plant and AM fungal traits for each greenhouse sample.  These measurements include 1) plant total dry weight (gram); 2) total arbuscular mycorrhizal colonization rate (%); 3) percentage of roots colonized by arbuscules (%); 4)external AM hyphal lengths (meter per gram of soil); 5) mycorrhizal growth response of plants; 6) ratio of N:P contents in plant tissues.
DOI: 10.5061/dryad.m0n61/6
title: BPP sequence file

description: phased sequence input file; for specimen IDs please refer to manuscript appendix
DOI: 10.5061/dryad.m9t12/6
title: Sea_Duck_Joint_Venture_2012_Atlantic_and_Great_Lakes_Migration_Study_Progress_Report

description: Reference S5. Sea Duck Joint Venture. 2012. Atlantic and Great Lakes Migration Study Progress Report - March 2012.
DOI: 10.5061/dryad.n2582/3
title: Clones_Growth_Data

description: Results of growth assays of ancestor and evolved clones in four experimental environments
DOI: 10.5061/dryad.n2582/4
title: Populations_Growth_Data

description: Results of growth assays of evolving E. coli populations in four experimental environments
DOI: 10.5061/dryad.qh1pg/3
title: DEAP Validation 2: Pathway Data

description: Representations of the simulated pathways from the section "DEAP Validation 2: Simulated Data on Biological Pathways" in the *.edg format utilized for input into the DEAP algorithm.
DOI: 10.5061/dryad.r7g12/1
title: Simulated data

description: Compressed file of simulated data.
DOI: 10.5061/dryad.sd080/5
title: birds-416-loci-subs-models.txt

description: Substitution models estimated for 416 locus data set.
DOI: 10.5061/dryad.sd080/6
title: birds-416-loci-mrbayes.gz

description: Nexus formatted, concatenated alignment of 416 UCE loci enriched from birds.
DOI: 10.5061/dryad.sd080/7
title: birds-416-loci-cloudforest-output.tar.gz

description: Genetrees and boostrap replicates generated from 416 loci using Cloudforest.
DOI: 10.5061/dryad.sh3m0/2
title: Shirleyetal_Mecistopssystematics_CpP205

description: Mecistops and outgroup sequences for nuclear marker CpP205.  See text file "Shirleyetal_Mecistopssystematics_OTUexplanations.txt" for OTU codes.  Refer to Methods text for other relevant details.
DOI: 10.5061/dryad.sh3m0/3
title: Shirleyetal_Mecistopssystematics_CpP2902

description: Mecistops and outgroup sequences for nuclear marker CpP2902.  See text file "Shirleyetal_Mecistopssystematics_OTUexplanations.txt" for OTU codes.  Refer to Methods text for other relevant details.
DOI: 10.5061/dryad.sh3m0/4
title: Shirleyetal_Mecistopssystematics_CpP3303

description: Mecistops and outgroup sequences for nuclear marker CpP3303.  See text file "Shirleyetal_Mecistopssystematics_OTUexplanations.txt" for OTU codes.  Refer to Methods text for other relevant details.
DOI: 10.5061/dryad.sh3m0/5
title: Shirleyetal_Mecistopssystematics_CpP4004

description: Mecistops and outgroup sequences for nuclear marker CpP4004.  See text file "Shirleyetal_Mecistopssystematics_OTUexplanations.txt" for OTU codes.  Refer to Methods text for other relevant details.
DOI: 10.5061/dryad.sh3m0/6
title: Shirleyetal_Mecistopssystematics_LDHA_rag1

description: Mecistops and outgroup sequences for nuclear markers LDHA and rag1.  See text file "Shirleyetal_Mecistopssystematics_OTUexplanations.txt" for OTU codes.  Refer to Methods text for other relevant details.
DOI: 10.5061/dryad.sh3m0/7
title: Shirleyetal_Mecistopssystematics_mtDNA

description: Mecistops and Osteolaemus sequences for all 4 mitochondrial markers.  See text file "Shirleyetal_Mecistopssystematics_OTUexplanations.txt" for OTU codes.  Refer to Methods text for other relevant details.
DOI: 10.5061/dryad.sh3m0/8
title: Shirleyetal_Mecistopssystematics_OTUexplanations

description: Relevant details concerning the OTU labels in all the sequence datasets.
DOI: 10.5061/dryad.sh3m0/9
title: Shirleyetal_Mecistopssystematics_morphodata

description: Morphological character codings.  Each OTU is labeled with the numeric portion of the relevant museum accession number (see Table 3) and the supposed collection locality.  Refer to Table 3 caption for further details.
DOI: 10.5061/dryad.vc60q/1
title: Participant median response times

description: Data are median response times for each participant in 3 visual psychophysics experiments testing 7 different camouflage strategies and a plain grey control. Exp 1 involved a single stationary target in three sizes and Exp 2 involved a single moving target in three sizes. The same participants were used in Exp 1 & 2 and each completed all conditions. Exp 3 involved an elliptical target and circular distractors which could be plain or match the target. Each participant completed all conditions.
DOI: 10.5061/dryad.vr184.1
title: Data from: Landscape connectivity for wildlife: development and validation of multi-species linkage maps
DOI: 10.5061/dryad.vr184.2
title: Data from: Landscape connectivity for wildlife: development and validation of multi-species linkage maps
DOI: 10.5061/dryad.210mp/1
title: Experimental data

description: Data from the Zostera-Loripes-Sulfide laboratory experiment.
DOI: 10.5061/dryad.2cb46/4
title: fig2

description: R code for generating figure 2
DOI: 10.5061/dryad.2hr77/5
title: settling survival compiled data

description: Change in cluster survival as we increased the strength of settling selection.
DOI: 10.5061/dryad.2hr77/6
title: Size and Settling velocity

description: Cluster size and settling velocity data of yeast from 7-227 days of evolution.
DOI: 10.5061/dryad.36f65/1
title: Wale et al_data file

description: Analysed oxygen consumption data from playback experiments.
DOI: 10.5061/dryad.3g57k/1
title: cluster analysis R-script

description: Summarized R-script used in data analysis.
DOI: 10.5061/dryad.3g57k/3
title: taxon groupings

description: Groups file used to constrain analysis R analysis.
DOI: 10.5061/dryad.3g57k/5
title: script_modifications_for_mx

description: Modifications for mx used in producing matrices.
DOI: 10.5061/dryad.3g57k/6
title: JHR_articles

description: Journal of Hymenoptera Research articles used in analysis with corresponding mx identifiers.
DOI: 10.5061/dryad.3g57k/7
title: terms

description: Terms found in mx database with identifier. These identifier numbers correspond to the term (character) numbers used in analysis.
DOI: 10.5061/dryad.3ks4h/1
title: Robertson et al. 2014 Complete Dataset for Dryad

description: Data from: HIF-1 mediates adaptive developmental plasticity of hypoxia tolerance in zebrafish, Danio rerio, Robertson, Cayleih, Wright, Patricia, Köblitz, Louise, Bernier, Nicholas
DOI: 10.5061/dryad.3t9k2/1
title: All_ali

description: All sequences for analysis
DOI: 10.5061/dryad.58q4d/1
title: island colour variation

description: Yellow colour variables for male hihi from three different islands
DOI: 10.5061/dryad.5c6v7/13
title: PAML control file - Clade model C null (M2a_rel)

description: Control file for the null model to PAML's Clade Model C (Table 2).
DOI: 10.5061/dryad.5c6v7/14
title: PAML control file - Clade model C

description: Control file for PAML's Clade Model C model testing for divergent selection among all a1a and a1b paralogs (Table 2, Test 2a).
DOI: 10.5061/dryad.5c6v7/15
title: Tree file for PAML- 4

description: Tree file for PAML's clade Model C, to run Test 2a (Table 2).
DOI: 10.5061/dryad.5c6v7/16
title: PAML Control file - One-Ratio

description: Control file for PAML's One-Ratio model (Table 1)