cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21400410
title: Additional file 1 of Functional transcriptome analyses of Drosophila suzukii midgut reveal mating-dependent reproductive plasticity in females

description: Additional file 1: Supplementary Table S1. Alignment statistics of the virginand mated D. suzukii female midgut RNA-Seq analysis. Supplementary Table S2. All genes description and FPKM value in D.suzukii virgin and mated female midguttranscriptomes. Supplementary Table S3. Differentially expressed genes in pairwise comparison in D. suzukii virgin and mated female midguttranscriptomes. Supplementary Table S4. GO classification of the differentially expressed genes in pairwise comparisonin D. suzukii virgin and mated femalemidguttranscriptomes. Three main categories, namely biological process (BP), cellularcomponent (CC), and molecular function (MF) were assigned to DEGs. Supplementary Table S5. KEGG pathwayenrichment analysis for differentially expressed genes in pairwise comparisonin D. suzukii virgin and mated femalemidguttranscriptomes. Supplementary Table S6. Primersused in our study. Supplementary FigureS1. Post-mating change in midgut length 1 and 3 days after mating in D.suzukii. Midgut length quantifications (A) and (D), representative imagesof virgin and mated female midgut phenotypes (B) and (E), changes in midgutrevealed by DAPI staining (C) and (F). The scale label is 500 um in picture Band E, and 20 um in picture C and F. SupplementaryFigure S2. Mating increases cell proliferation in female D. suzukii midgut.Error bars indicate the SEM of three independent biological replicates andasterisks (**) indicate the statistically significant differences (P &lt; 0.01)between virgin and mated female midgut based on Student’ s t-test.SupplementaryFigure S3. Evaluation of sequence quality for the D. suzukii virgin and mated female midguttranscriptomes. SupplementaryFigure S4. Distribution of protein coding genes lengths in D.suzukii virgin and mated female midguttranscriptomes. The sizes of all protein coding genes were calculated. SupplementaryFigure S5. Mating increases neutrallipidcontent revealed by Bodipy staining in the whole virgin and mated female midgutof D. suzukii. The quantification is showed in the right. The scale bar is 500 um.
DOI: 10.6084/m9.figshare.21400410.v1
title: Additional file 1 of Functional transcriptome analyses of Drosophila suzukii midgut reveal mating-dependent reproductive plasticity in females

description: Additional file 1: Supplementary Table S1. Alignment statistics of the virginand mated D. suzukii female midgut RNA-Seq analysis. Supplementary Table S2. All genes description and FPKM value in D.suzukii virgin and mated female midguttranscriptomes. Supplementary Table S3. Differentially expressed genes in pairwise comparison in D. suzukii virgin and mated female midguttranscriptomes. Supplementary Table S4. GO classification of the differentially expressed genes in pairwise comparisonin D. suzukii virgin and mated femalemidguttranscriptomes. Three main categories, namely biological process (BP), cellularcomponent (CC), and molecular function (MF) were assigned to DEGs. Supplementary Table S5. KEGG pathwayenrichment analysis for differentially expressed genes in pairwise comparisonin D. suzukii virgin and mated femalemidguttranscriptomes. Supplementary Table S6. Primersused in our study. Supplementary FigureS1. Post-mating change in midgut length 1 and 3 days after mating in D.suzukii. Midgut length quantifications (A) and (D), representative imagesof virgin and mated female midgut phenotypes (B) and (E), changes in midgutrevealed by DAPI staining (C) and (F). The scale label is 500 um in picture Band E, and 20 um in picture C and F. SupplementaryFigure S2. Mating increases cell proliferation in female D. suzukii midgut.Error bars indicate the SEM of three independent biological replicates andasterisks (**) indicate the statistically significant differences (P &lt; 0.01)between virgin and mated female midgut based on Student’ s t-test.SupplementaryFigure S3. Evaluation of sequence quality for the D. suzukii virgin and mated female midguttranscriptomes. SupplementaryFigure S4. Distribution of protein coding genes lengths in D.suzukii virgin and mated female midguttranscriptomes. The sizes of all protein coding genes were calculated. SupplementaryFigure S5. Mating increases neutrallipidcontent revealed by Bodipy staining in the whole virgin and mated female midgutof D. suzukii. The quantification is showed in the right. The scale bar is 500 um.
DOI: 10.6084/m9.figshare.16681745.v1
title: Additional file 2 of Screening for differentially expressed circRNAs in ischemic stroke by RNA sequencing

description: Additional file 2.
DOI: 10.6084/m9.figshare.13536209
title: Input data

description: Database for caculation of material stocks and flows
DOI: 10.6084/m9.figshare.13536215
title: Model code

description: Calculation code for material stocks and flows estimation
DOI: 10.6084/m9.figshare.13536218
title: Material stocks

description: Material stocks for China and its 31 provinces
DOI: 10.6084/m9.figshare.13536221
title: Material inflows

description: Material inflows for China and its 31 provinces
DOI: 10.6084/m9.figshare.13536224
title: Material outflows

description: Material outflows in China and its 31 provinces
DOI: 10.6084/m9.figshare.13536282
title: Pre-existing COPD is associated with an increased risk of mortality and severity in COVID-19: a rapid systematic review and meta-analysis

description: <b>Objectives</b>: The objective of this systematic review and meta-analysis was to investigate COVID-19 mortality and severity among patients with pre-existing COPD. <b>Methods</b>: We performed systematic searches in Ovid Medline, Embase via Ovid, PubMed, and Scopus from 15 December 2019 to 7 July 2020. Studies which reported the association and presented data on risk estimate (Hazard Ratio [HR]) with 95% confidence intervals (95%CIs) were extracted. A random-effects model was used to obtain the pooled estimates, and a pooled Risk Ratio (RR) was calculated. Study quality was assessed using a modified version of the Newcastle–Ottawa Scale. <b>Results</b>: Our meta-analysis showed an increased likelihood of mortality in COVID-19 patients with pre-existing COPD (RR 3.18, 95% CI 2.11–4.80, HR 1.90, 95%CI 1.11–3.26). Furthermore, the pooled estimate for the association between pre-existing COPD and severity due to COVID-19 was also significant (RR 3.63, 95%CI 2.48–5.31). Males had an increased risk of mortality (RR 1.20, 95%CI 1.12–1.29) compared to females. <b>Conclusion</b>: We found that patients with pre-existing COPD had more than 3 times higher risk of mortality and severe COVID-19. There is a need to identify patients with pre-existing COPD during the pandemic so that early interventions can be aimed at this group of patients.
DOI: 10.6084/m9.figshare.21400475
title: Additional file 2 of Direct identification of HLA class I and class II-restricted T cell epitopes in pancreatic cancer tissues by mass spectrometry

description: Additional file 2: Supplemental Table S2, PDAC peptidome.
DOI: 10.6084/m9.figshare.21400475.v1
title: Additional file 2 of Direct identification of HLA class I and class II-restricted T cell epitopes in pancreatic cancer tissues by mass spectrometry

description: Additional file 2: Supplemental Table S2, PDAC peptidome.
DOI: 10.6084/m9.figshare.17206280
title: Antipsychotic drug treatment of schizophrenia in later life: Results from the European cross-sectional AMSP study

description: To investigate the relationship between patient age and the selection and dosage of antipsychotic drugs (APDs) for treatment of schizophrenia. We describe age effects for multiple individual APDs, thus allowing comparisons between drugs. Prescription data of 32,062 inpatients with schizophrenia from 2000 to 2017 were obtained from the Drug Safety Program in Psychiatry (AMSP) database. APD selection and dosage were related to patient age with sex as an influencing variable. Moreover, a systematic search of current guideline recommendations on APD treatment in patients with schizophrenia aged ≥65 years was performed. Eighty percentof elderly patients (≥65 years) received a second-generation APD, most commonly risperidone. The dosage of APDs increased with age until about age 40 years, then decreased slowly at first and more steeply beyond age 55 years. The influence of age as well as sex on dosage partly differed between the individual drugs. Only one of eight schizophrenia guidelines systematically addressed specific aspects of pharmacotherapy in older adults. In clinical routine, age has a significant impact on selection and dosing of APDs. Information on optimising pharmacotherapy in older adults with schizophrenia from clinical trials is needed. Guidelines should be improved regarding APD therapy specifically for older adults.
DOI: 10.6084/m9.figshare.12381617.v1
title: Additional file 3 of Comparative transcriptome profiling reveals cold stress responsiveness in two contrasting Chinese jujube cultivars

description: Additional file 3. DEGs between ‘Dongzao’ and ‘Jinsixiaozao’ at the same freezing stress.
DOI: 10.25345/c5bk1713n
title: MassIVE MSV000094163 - GNPS_20240226_B27_0339_LCMSMS_firstrun
title: C8, C18, HILIC, columns. Organic and aqueous extracts from transgenic and wt animals. Colon and cecum compartment. First run. Non optimized conditions.
DOI: 10.24417/4c174e41-373c-4107-897b-06c40a01080d
title: Surface geological unit map of Belgium (1:40000)
title: Kaart van de oppervlaktegeologie van België (1:40000)
title: Carte de la géologie de surface de Belgique(1:40000)
title: Karte der Oberflächengeologie Belgiens (1:40000)

description: The Geological Map of Belgium at a scale of 1:40000 is published by the Belgian Geological Survey.
description: Geologische kaart van de oppervlaktegeologie in schaal 1:40000, uitgegeven door de Belgische Geologische Dienst.
description: La carte de géologie de surface à 1:40000 est publiée par le service Géologique Belge.
description: Geologische Karte der Oberflächengeologie im Maßstab 1:40000, herausgegeben durch den Geologischen Dienst von Belgien.
DOI: 10.6084/m9.figshare.17206280.v1
title: Antipsychotic drug treatment of schizophrenia in later life: Results from the European cross-sectional AMSP study

description: To investigate the relationship between patient age and the selection and dosage of antipsychotic drugs (APDs) for treatment of schizophrenia. We describe age effects for multiple individual APDs, thus allowing comparisons between drugs. Prescription data of 32,062 inpatients with schizophrenia from 2000 to 2017 were obtained from the Drug Safety Program in Psychiatry (AMSP) database. APD selection and dosage were related to patient age with sex as an influencing variable. Moreover, a systematic search of current guideline recommendations on APD treatment in patients with schizophrenia aged ≥65 years was performed. Eighty percentof elderly patients (≥65 years) received a second-generation APD, most commonly risperidone. The dosage of APDs increased with age until about age 40 years, then decreased slowly at first and more steeply beyond age 55 years. The influence of age as well as sex on dosage partly differed between the individual drugs. Only one of eight schizophrenia guidelines systematically addressed specific aspects of pharmacotherapy in older adults. In clinical routine, age has a significant impact on selection and dosing of APDs. Information on optimising pharmacotherapy in older adults with schizophrenia from clinical trials is needed. Guidelines should be improved regarding APD therapy specifically for older adults.
DOI: 10.6084/m9.figshare.12381632
title: Additional file 6 of Comparative transcriptome profiling reveals cold stress responsiveness in two contrasting Chinese jujube cultivars

description: Additional file 6. FPKM values of Key transcription factors.
DOI: 10.6084/m9.figshare.12381629.v1
title: Additional file 5 of Comparative transcriptome profiling reveals cold stress responsiveness in two contrasting Chinese jujube cultivars

description: Additional file 5. DEGs at different degree freezing stress in ‘Jinsixiaozao’.
DOI: 10.6084/m9.figshare.12381629
title: Additional file 5 of Comparative transcriptome profiling reveals cold stress responsiveness in two contrasting Chinese jujube cultivars

description: Additional file 5. DEGs at different degree freezing stress in ‘Jinsixiaozao’.
DOI: 10.6084/m9.figshare.13536282.v1
title: Pre-existing COPD is associated with an increased risk of mortality and severity in COVID-19: a rapid systematic review and meta-analysis

description: <b>Objectives</b>: The objective of this systematic review and meta-analysis was to investigate COVID-19 mortality and severity among patients with pre-existing COPD. <b>Methods</b>: We performed systematic searches in Ovid Medline, Embase via Ovid, PubMed, and Scopus from 15 December 2019 to 7 July 2020. Studies which reported the association and presented data on risk estimate (Hazard Ratio [HR]) with 95% confidence intervals (95%CIs) were extracted. A random-effects model was used to obtain the pooled estimates, and a pooled Risk Ratio (RR) was calculated. Study quality was assessed using a modified version of the Newcastle–Ottawa Scale. <b>Results</b>: Our meta-analysis showed an increased likelihood of mortality in COVID-19 patients with pre-existing COPD (RR 3.18, 95% CI 2.11–4.80, HR 1.90, 95%CI 1.11–3.26). Furthermore, the pooled estimate for the association between pre-existing COPD and severity due to COVID-19 was also significant (RR 3.63, 95%CI 2.48–5.31). Males had an increased risk of mortality (RR 1.20, 95%CI 1.12–1.29) compared to females. <b>Conclusion</b>: We found that patients with pre-existing COPD had more than 3 times higher risk of mortality and severe COVID-19. There is a need to identify patients with pre-existing COPD during the pandemic so that early interventions can be aimed at this group of patients.
DOI: 10.6084/m9.figshare.13536282.v2
title: Pre-existing COPD is associated with an increased risk of mortality and severity in COVID-19: a rapid systematic review and meta-analysis

description: <b>Objectives</b>: The objective of this systematic review and meta-analysis was to investigate COVID-19 mortality and severity among patients with pre-existing COPD. <b>Methods</b>: We performed systematic searches in Ovid Medline, Embase via Ovid, PubMed, and Scopus from 15 December 2019 to 7 July 2020. Studies which reported the association and presented data on risk estimate (Hazard Ratio [HR]) with 95% confidence intervals (95%CIs) were extracted. A random-effects model was used to obtain the pooled estimates, and a pooled Risk Ratio (RR) was calculated. Study quality was assessed using a modified version of the Newcastle–Ottawa Scale. <b>Results</b>: Our meta-analysis showed an increased likelihood of mortality in COVID-19 patients with pre-existing COPD (RR 3.18, 95% CI 2.11–4.80, HR 1.90, 95%CI 1.11–3.26). Furthermore, the pooled estimate for the association between pre-existing COPD and severity due to COVID-19 was also significant (RR 3.63, 95%CI 2.48–5.31). Males had an increased risk of mortality (RR 1.20, 95%CI 1.12–1.29) compared to females. <b>Conclusion</b>: We found that patients with pre-existing COPD had more than 3 times higher risk of mortality and severe COVID-19. There is a need to identify patients with pre-existing COPD during the pandemic so that early interventions can be aimed at this group of patients.
DOI: 10.6084/m9.figshare.12381632.v1
title: Additional file 6 of Comparative transcriptome profiling reveals cold stress responsiveness in two contrasting Chinese jujube cultivars

description: Additional file 6. FPKM values of Key transcription factors.
DOI: 10.6084/m9.figshare.12381617
title: Additional file 3 of Comparative transcriptome profiling reveals cold stress responsiveness in two contrasting Chinese jujube cultivars

description: Additional file 3. DEGs between ‘Dongzao’ and ‘Jinsixiaozao’ at the same freezing stress.
DOI: 10.6084/m9.figshare.11439252
title: Metabolomics analysis of human plasma metabolites reveals the age- and sex-specific associations

description: <b>Objectives:</b> The objective of this study was the investigation of age- and sex-associations in a set of blood plasma metabolites in healthy male and female subjects. <b>Methods:</b> A comparison study design with male and female subjects of various ages was used. Metabolic profiling was performed using electrospray ionization tandem mass spectrometry that yielded 186 metabolite concentrations for each study participant. The key age-related metabolites were identified using an integrative analysis of absolute concentrations, metabolite ratios and the differential correlation of pairwise metabolite concentrations. All of the age-associated metabolites were adjusted prior to the analysis to account for differences in Body Mass Index (BMI). <b>Results:</b> A total of 236 plasma samples from 140 female and 96 male subjects aged 20 to 82 years-old were collected and analyzed in the study. 13 and 14 age-associated metabolites (|r| &gt; 0.33 and <i>p</i> &lt; 6.6×10<sup>−5</sup>), 438 and 337 age-associated metabolite ratios (|r| &gt; 0.37 and <i>p</i> &lt; 3.5×10<sup>−6</sup>), and 5 and 10 core metabolites were discovered in the female and male groups, respectively. 80% of the metabolites displaying associations with age belonged to sphingolipids and phosphatidylcholines, and the two sexes shared less than 50% of the age-associated metabolites. <b>Conclusion:</b> The study found that changes in metabolite concentrations, metabolite ratios and differential correlations were age and sex-specific.
DOI: 10.6084/m9.figshare.21400383
title: Additional file 3 of Smoking-mediated nicotinic acetylcholine receptors (nAChRs) for predicting outcomes for head and neck squamous cell carcinomas

description: Additional file 3: Supplementary Table 1. Clinical information of smoking HNSCC cohort.
DOI: 10.6084/m9.figshare.11439252.v1
title: Metabolomics analysis of human plasma metabolites reveals the age- and sex-specific associations

description: <b>Objectives:</b> The objective of this study was the investigation of age- and sex-associations in a set of blood plasma metabolites in healthy male and female subjects. <b>Methods:</b> A comparison study design with male and female subjects of various ages was used. Metabolic profiling was performed using electrospray ionization tandem mass spectrometry that yielded 186 metabolite concentrations for each study participant. The key age-related metabolites were identified using an integrative analysis of absolute concentrations, metabolite ratios and the differential correlation of pairwise metabolite concentrations. All of the age-associated metabolites were adjusted prior to the analysis to account for differences in Body Mass Index (BMI). <b>Results:</b> A total of 236 plasma samples from 140 female and 96 male subjects aged 20 to 82 years-old were collected and analyzed in the study. 13 and 14 age-associated metabolites (|r| &gt; 0.33 and <i>p</i> &lt; 6.6×10<sup>−5</sup>), 438 and 337 age-associated metabolite ratios (|r| &gt; 0.37 and <i>p</i> &lt; 3.5×10<sup>−6</sup>), and 5 and 10 core metabolites were discovered in the female and male groups, respectively. 80% of the metabolites displaying associations with age belonged to sphingolipids and phosphatidylcholines, and the two sexes shared less than 50% of the age-associated metabolites. <b>Conclusion:</b> The study found that changes in metabolite concentrations, metabolite ratios and differential correlations were age and sex-specific.
DOI: 10.6084/m9.figshare.21400383.v1
title: Additional file 3 of Smoking-mediated nicotinic acetylcholine receptors (nAChRs) for predicting outcomes for head and neck squamous cell carcinomas

description: Additional file 3: Supplementary Table 1. Clinical information of smoking HNSCC cohort.
DOI: 10.6084/m9.figshare.21400386
title: Additional file 4 of Smoking-mediated nicotinic acetylcholine receptors (nAChRs) for predicting outcomes for head and neck squamous cell carcinomas

description: Additional file 4: Supplementary Table 2. Clinical information of adjacent normal samples.
DOI: 10.6084/m9.figshare.21400392.v1
title: Additional file 6 of Smoking-mediated nicotinic acetylcholine receptors (nAChRs) for predicting outcomes for head and neck squamous cell carcinomas

description: Additional file 6: Supplementary Table 4. The sequences of all primers used in this study.
DOI: 10.6084/m9.figshare.21400392
title: Additional file 6 of Smoking-mediated nicotinic acetylcholine receptors (nAChRs) for predicting outcomes for head and neck squamous cell carcinomas

description: Additional file 6: Supplementary Table 4. The sequences of all primers used in this study.
DOI: 10.6084/m9.figshare.13536437
title: Wudalianchi Volcanic Field, NE China: Tectonic Setting, Eruptive History, and Geophysical Insights

description: Table S1: K-Ar isotopic dating results in the Wudalianchi volcanic belt
DOI: 10.6084/m9.figshare.21400386.v1
title: Additional file 4 of Smoking-mediated nicotinic acetylcholine receptors (nAChRs) for predicting outcomes for head and neck squamous cell carcinomas

description: Additional file 4: Supplementary Table 2. Clinical information of adjacent normal samples.
DOI: 10.6084/m9.figshare.21400389
title: Additional file 5 of Smoking-mediated nicotinic acetylcholine receptors (nAChRs) for predicting outcomes for head and neck squamous cell carcinomas

description: Additional file 5: Supplementary Table 3. Clinical information of 61 paired samples diagnosed with HNSCC.
DOI: 10.6084/m9.figshare.21400389.v1
title: Additional file 5 of Smoking-mediated nicotinic acetylcholine receptors (nAChRs) for predicting outcomes for head and neck squamous cell carcinomas

description: Additional file 5: Supplementary Table 3. Clinical information of 61 paired samples diagnosed with HNSCC.
DOI: 10.6084/m9.figshare.13536437.v1
title: Wudalianchi Volcanic Field, NE China: Tectonic Setting, Eruptive History, and Geophysical Insights

description: Table S1: K-Ar isotopic dating results in the Wudalianchi volcanic belt
DOI: 10.6084/m9.figshare.13536440
title: Wudalianchi Volcanic Field, NE China: Tectonic Setting, Eruptive History, and Geophysical Insights

description: Table S2: Geochemistry data of volcanism of the Songliao Basin
DOI: 10.6084/m9.figshare.13536440.v1
title: Wudalianchi Volcanic Field, NE China: Tectonic Setting, Eruptive History, and Geophysical Insights

description: Table S2: Geochemistry data of volcanism of the Songliao Basin
DOI: 10.6084/m9.figshare.13011867.v1
title: Additional file 1 of Gene coexpression network analysis reveals a novel metabolic mechanism of Clostridium acetobutylicum responding to phenolic inhibitors from lignocellulosic hydrolysates

description: Additional file 1: Table SII. GS & MM in WGCNA Modules.
DOI: 10.6084/m9.figshare.13011873
title: Additional file 3 of Gene coexpression network analysis reveals a novel metabolic mechanism of Clostridium acetobutylicum responding to phenolic inhibitors from lignocellulosic hydrolysates

description: Additional file 3: Table SI. FPKM and Gene Annotation.
DOI: 10.15468/dl.cc54y2
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cissus gongylodes (Baker) Burch. ex Baker"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049636-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.