cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6743036.v1
title: Bat fly-associated Laboulbeniales LSU dataset

description: This is the aligned LSU dataset, which was used as input for the assessment of the phylogenetic diversity in the bat fly-associated genus Gloeandromyces.<br><br>--Haelewaters et al. 2018. Laboulbeniales hyperparasites (Fungi, Ascomycota) of bat flies: Independent origins and host associations. DOI:10.1002/ece3.4359<br>ABSTRACTThe aim of this study was to explore the diversity of ectoparasitic fungi (Ascomycota, Laboulbeniales) that use bat flies (Diptera, Hippoboscoidea) as hosts. Bat flies themselves live as ectoparasites on the fur and wing membranes of bats (Mammalia, Chiroptera); hence this is a tripartite parasite system. Here, we collected bats, bat flies, and Laboulbeniales, and conducted phylogenetic analyses of Laboulbeniales to contrast morphology with ribosomal sequence data. Parasitism of bat flies by Laboulbeniales arose three times independently, once in the Eastern Hemisphere (Arthrorhynchus) and twice in the Western Hemisphere (Gloeandromyces, Nycteromyces). We hypothesize that the genera Arthrorhynchus and Nycteromyces evolved independently from lineages of ectoparasites of true buge (Hemiptera). We assessed phylogenetic diversity of the genus Gloeandromyces by considering the LSU rDNA region. Phenotypic plasticity and position-induced morphological adaptations go hand in hand. Different morphotypes belong to the same phylogenetic species. Two species, G. pageanus and G. streblae, show divergence by host utilization. In our assessement of coevolution, we only observe congruence between the Old World clades of bat flies and Laboulbeniales. The other associations are the result of the roosting ecology of the bat hosts. This study has considerably increased our knowledge about bats and their associated ectoparasites and shown the necessity of including molecular data in Laboulbeniales taxonomy. <br>KEYWORDSAscomycota, ectoparasites, host specialization, phenotypic plasticity, ribosomal DNA, taxonomy
DOI: 10.6084/m9.figshare.6743027
title: Bat fly-associated Laboulbeniales log files SSU+LSU

description: Output log files of the BEAST analysis of the two-gene dataset (SSU+LSU), under a GTR+I model of nucleotide substitution. Four independent runs were performed for 80 million generations.<br><br>--Haelewaters et al. 2018. Laboulbeniales hyperparasites (Fungi, Ascomycota) of bat flies: Independent origins and host associations. DOI:10.1002/ece3.4359<br>ABSTRACTThe aim of this study was to explore the diversity of ectoparasitic fungi (Ascomycota, Laboulbeniales) that use bat flies (Diptera, Hippoboscoidea) as hosts. Bat flies themselves live as ectoparasites on the fur and wing membranes of bats (Mammalia, Chiroptera); hence this is a tripartite parasite system. Here, we collected bats, bat flies, and Laboulbeniales, and conducted phylogenetic analyses of Laboulbeniales to contrast morphology with ribosomal sequence data. Parasitism of bat flies by Laboulbeniales arose three times independently, once in the Eastern Hemisphere (Arthrorhynchus) and twice in the Western Hemisphere (Gloeandromyces, Nycteromyces). We hypothesize that the genera Arthrorhynchus and Nycteromyces evolved independently from lineages of ectoparasites of true buge (Hemiptera). We assessed phylogenetic diversity of the genus Gloeandromyces by considering the LSU rDNA region. Phenotypic plasticity and position-induced morphological adaptations go hand in hand. Different morphotypes belong to the same phylogenetic species. Two species, G. pageanus and G. streblae, show divergence by host utilization. In our assessement of coevolution, we only observe congruence between the Old World clades of bat flies and Laboulbeniales. The other associations are the result of the roosting ecology of the bat hosts. This study has considerably increased our knowledge about bats and their associated ectoparasites and shown the necessity of including molecular data in Laboulbeniales taxonomy. <br>KEYWORDSAscomycota, ectoparasites, host specialization, phenotypic plasticity, ribosomal DNA, taxonomy
DOI: 10.6084/m9.figshare.6743033
title: Bat fly-associated Laboulbeniales trees files SSU+LSU

description: Output .trees files of the BEAST analysis of the two-gene dataset (SSU+LSU), under a GTR+I model of nucleotide substitution. Four independent runs were performed for 80 million generations.<br><br>--Haelewaters et al. 2018. Laboulbeniales hyperparasites (Fungi, Ascomycota) of bat flies: Independent origins and host associations. DOI:10.1002/ece3.4359<br>ABSTRACTThe aim of this study was to explore the diversity of ectoparasitic fungi (Ascomycota, Laboulbeniales) that use bat flies (Diptera, Hippoboscoidea) as hosts. Bat flies themselves live as ectoparasites on the fur and wing membranes of bats (Mammalia, Chiroptera); hence this is a tripartite parasite system. Here, we collected bats, bat flies, and Laboulbeniales, and conducted phylogenetic analyses of Laboulbeniales to contrast morphology with ribosomal sequence data. Parasitism of bat flies by Laboulbeniales arose three times independently, once in the Eastern Hemisphere (Arthrorhynchus) and twice in the Western Hemisphere (Gloeandromyces, Nycteromyces). We hypothesize that the genera Arthrorhynchus and Nycteromyces evolved independently from lineages of ectoparasites of true buge (Hemiptera). We assessed phylogenetic diversity of the genus Gloeandromyces by considering the LSU rDNA region. Phenotypic plasticity and position-induced morphological adaptations go hand in hand. Different morphotypes belong to the same phylogenetic species. Two species, G. pageanus and G. streblae, show divergence by host utilization. In our assessement of coevolution, we only observe congruence between the Old World clades of bat flies and Laboulbeniales. The other associations are the result of the roosting ecology of the bat hosts. This study has considerably increased our knowledge about bats and their associated ectoparasites and shown the necessity of including molecular data in Laboulbeniales taxonomy. <br>KEYWORDSAscomycota, ectoparasites, host specialization, phenotypic plasticity, ribosomal DNA, taxonomy
DOI: 10.6084/m9.figshare.6743033.v1
title: Bat fly-associated Laboulbeniales trees files SSU+LSU

description: Output .trees files of the BEAST analysis of the two-gene dataset (SSU+LSU), under a GTR+I model of nucleotide substitution. Four independent runs were performed for 80 million generations.<br><br>--Haelewaters et al. 2018. Laboulbeniales hyperparasites (Fungi, Ascomycota) of bat flies: Independent origins and host associations. DOI:10.1002/ece3.4359<br>ABSTRACTThe aim of this study was to explore the diversity of ectoparasitic fungi (Ascomycota, Laboulbeniales) that use bat flies (Diptera, Hippoboscoidea) as hosts. Bat flies themselves live as ectoparasites on the fur and wing membranes of bats (Mammalia, Chiroptera); hence this is a tripartite parasite system. Here, we collected bats, bat flies, and Laboulbeniales, and conducted phylogenetic analyses of Laboulbeniales to contrast morphology with ribosomal sequence data. Parasitism of bat flies by Laboulbeniales arose three times independently, once in the Eastern Hemisphere (Arthrorhynchus) and twice in the Western Hemisphere (Gloeandromyces, Nycteromyces). We hypothesize that the genera Arthrorhynchus and Nycteromyces evolved independently from lineages of ectoparasites of true buge (Hemiptera). We assessed phylogenetic diversity of the genus Gloeandromyces by considering the LSU rDNA region. Phenotypic plasticity and position-induced morphological adaptations go hand in hand. Different morphotypes belong to the same phylogenetic species. Two species, G. pageanus and G. streblae, show divergence by host utilization. In our assessement of coevolution, we only observe congruence between the Old World clades of bat flies and Laboulbeniales. The other associations are the result of the roosting ecology of the bat hosts. This study has considerably increased our knowledge about bats and their associated ectoparasites and shown the necessity of including molecular data in Laboulbeniales taxonomy. <br>KEYWORDSAscomycota, ectoparasites, host specialization, phenotypic plasticity, ribosomal DNA, taxonomy
DOI: 10.6084/m9.figshare.6743027.v1
title: Bat fly-associated Laboulbeniales log files SSU+LSU

description: Output log files of the BEAST analysis of the two-gene dataset (SSU+LSU), under a GTR+I model of nucleotide substitution. Four independent runs were performed for 80 million generations.<br><br>--Haelewaters et al. 2018. Laboulbeniales hyperparasites (Fungi, Ascomycota) of bat flies: Independent origins and host associations. DOI:10.1002/ece3.4359<br>ABSTRACTThe aim of this study was to explore the diversity of ectoparasitic fungi (Ascomycota, Laboulbeniales) that use bat flies (Diptera, Hippoboscoidea) as hosts. Bat flies themselves live as ectoparasites on the fur and wing membranes of bats (Mammalia, Chiroptera); hence this is a tripartite parasite system. Here, we collected bats, bat flies, and Laboulbeniales, and conducted phylogenetic analyses of Laboulbeniales to contrast morphology with ribosomal sequence data. Parasitism of bat flies by Laboulbeniales arose three times independently, once in the Eastern Hemisphere (Arthrorhynchus) and twice in the Western Hemisphere (Gloeandromyces, Nycteromyces). We hypothesize that the genera Arthrorhynchus and Nycteromyces evolved independently from lineages of ectoparasites of true buge (Hemiptera). We assessed phylogenetic diversity of the genus Gloeandromyces by considering the LSU rDNA region. Phenotypic plasticity and position-induced morphological adaptations go hand in hand. Different morphotypes belong to the same phylogenetic species. Two species, G. pageanus and G. streblae, show divergence by host utilization. In our assessement of coevolution, we only observe congruence between the Old World clades of bat flies and Laboulbeniales. The other associations are the result of the roosting ecology of the bat hosts. This study has considerably increased our knowledge about bats and their associated ectoparasites and shown the necessity of including molecular data in Laboulbeniales taxonomy. <br>KEYWORDSAscomycota, ectoparasites, host specialization, phenotypic plasticity, ribosomal DNA, taxonomy
DOI: 10.6084/m9.figshare.6743018
title: Bat fly-associated Laboulbeniales SSU+LSU aligned dataset

description: This is the aligned two-gene dataset, which was used as input for the assessment of the position of bat fly-associated Laboulbeniales genera among Laboulbeniales from other hosts.<br><br>--Haelewaters et al. 2018. Laboulbeniales hyperparasites (Fungi, Ascomycota) of bat flies: Independent origins and host associations. DOI:10.1002/ece3.4359<br><br>ABSTRACTThe aim of this study was to explore the diversity of ectoparasitic fungi (Ascomycota, Laboulbeniales) that use bat flies (Diptera, Hippoboscoidea) as hosts. Bat flies themselves live as ectoparasites on the fur and wing membranes of bats (Mammalia, Chiroptera); hence this is a tripartite parasite system. Here, we collected bats, bat flies, and Laboulbeniales, and conducted phylogenetic analyses of Laboulbeniales to contrast morphology with ribosomal sequence data. Parasitism of bat flies by Laboulbeniales arose three times independently, once in the Eastern Hemisphere (Arthrorhynchus) and twice in the Western Hemisphere (Gloeandromyces, Nycteromyces). We hypothesize that the genera Arthrorhynchus and Nycteromyces evolved independently from lineages of ectoparasites of true buge (Hemiptera). We assessed phylogenetic diversity of the genus Gloeandromyces by considering the LSU rDNA region. Phenotypic plasticity and position-induced morphological adaptations go hand in hand. Different morphotypes belong to the same phylogenetic species. Two species, G. pageanus and G. streblae, show divergence by host utilization. In our assessement of coevolution, we only observe congruence between the Old World clades of bat flies and Laboulbeniales. The other associations are the result of the roosting ecology of the bat hosts. This study has considerably increased our knowledge about bats and their associated ectoparasites and shown the necessity of including molecular data in Laboulbeniales taxonomy. <br>KEYWORDSAscomycota, ectoparasites, host specialization, phenotypic plasticity, ribosomal DNA, taxonomy<br>
DOI: 10.6084/m9.figshare.6743018.v2
title: Bat fly-associated Laboulbeniales SSU+LSU aligned dataset

description: This is the aligned two-gene dataset, which was used as input for the assessment of the position of bat fly-associated Laboulbeniales genera among Laboulbeniales from other hosts.<br><br>--Haelewaters et al. 2018. Laboulbeniales hyperparasites (Fungi, Ascomycota) of bat flies: Independent origins and host associations. DOI:10.1002/ece3.4359<br><br>ABSTRACTThe aim of this study was to explore the diversity of ectoparasitic fungi (Ascomycota, Laboulbeniales) that use bat flies (Diptera, Hippoboscoidea) as hosts. Bat flies themselves live as ectoparasites on the fur and wing membranes of bats (Mammalia, Chiroptera); hence this is a tripartite parasite system. Here, we collected bats, bat flies, and Laboulbeniales, and conducted phylogenetic analyses of Laboulbeniales to contrast morphology with ribosomal sequence data. Parasitism of bat flies by Laboulbeniales arose three times independently, once in the Eastern Hemisphere (Arthrorhynchus) and twice in the Western Hemisphere (Gloeandromyces, Nycteromyces). We hypothesize that the genera Arthrorhynchus and Nycteromyces evolved independently from lineages of ectoparasites of true buge (Hemiptera). We assessed phylogenetic diversity of the genus Gloeandromyces by considering the LSU rDNA region. Phenotypic plasticity and position-induced morphological adaptations go hand in hand. Different morphotypes belong to the same phylogenetic species. Two species, G. pageanus and G. streblae, show divergence by host utilization. In our assessement of coevolution, we only observe congruence between the Old World clades of bat flies and Laboulbeniales. The other associations are the result of the roosting ecology of the bat hosts. This study has considerably increased our knowledge about bats and their associated ectoparasites and shown the necessity of including molecular data in Laboulbeniales taxonomy. <br>KEYWORDSAscomycota, ectoparasites, host specialization, phenotypic plasticity, ribosomal DNA, taxonomy<br>
DOI: 10.6084/m9.figshare.6743018.v1
title: Two-gene dataset bat fly-associated Laboulbeniales

description: This is the aligned two-gene dataset, which was used as input for the assessment of the position of bat fly-associated Laboulbeniales genera among Laboulbeniales from other hosts.<br><br>--Haelewaters et al. 2018. Laboulbeniales hyperparasites (Fungi, Ascomycota) of bat flies: Independent origins and host associations. DOI:10.1002/ece3.4359<br><br>ABSTRACTThe aim of this study was to explore the diversity of ectoparasitic fungi (Ascomycota, Laboulbeniales) that use bat flies (Diptera, Hippoboscoidea) as hosts. Bat flies themselves live as ectoparasites on the fur and wing membranes of bats (Mammalia, Chiroptera); hence this is a tripartite parasite system. Here, we collected bats, bat flies, and Laboulbeniales, and conducted phylogenetic analyses of Laboulbeniales to contrast morphology with ribosomal sequence data. Parasitism of bat flies by Laboulbeniales arose three times independently, once in the Eastern Hemisphere (Arthrorhynchus) and twice in the Western Hemisphere (Gloeandromyces, Nycteromyces). We hypothesize that the genera Arthrorhynchus and Nycteromyces evolved independently from lineages of ectoparasites of true buge (Hemiptera). We assessed phylogenetic diversity of the genus Gloeandromyces by considering the LSU rDNA region. Phenotypic plasticity and position-induced morphological adaptations go hand in hand. Different morphotypes belong to the same phylogenetic species. Two species, G. pageanus and G. streblae, show divergence by host utilization. In our assessement of coevolution, we only observe congruence between the Old World clades of bat flies and Laboulbeniales. The other associations are the result of the roosting ecology of the bat hosts. This study has considerably increased our knowledge about bats and their associated ectoparasites and shown the necessity of including molecular data in Laboulbeniales taxonomy. <br>KEYWORDSAscomycota, ectoparasites, host specialization, phenotypic plasticity, ribosomal DNA, taxonomy<br>
DOI: 10.6084/m9.figshare.6743006
title: Effects of blending 2,5-dimethylfuran on the laminar burning velocity and ignition delay time of isooctane/air mixture

description: The prospects of 2,5-dimethylfuran (DMF) as a bio-derived fuel that can be blended with gasoline are believed to be impressive. However, the effects of blending DMF on the key combustion parameters like the laminar burning velocity and ignition delay time of gasoline/air mixture need to be studied extensively for the successful implementation of the fuel mixture in spark ignition engines. Therefore, a skeletal chemical kinetic mechanism, comprising of 999 reactions among 218 species, has been developed in the present work for this purpose. The proposed chemical kinetic model has been validated against a wide range of experimental data for the laminar burning velocity and ignition delay time of isooctane (representing gasoline), DMF and their blends. It has been found from the present study that the thermal diffusivity of the unburnt gas mixture changes by a very small amount from the corresponding value for the pure isooctane/air mixture when DMF is added. Unlike isooctane, the DMF molecule does not consume H radicals during its primary breakup. Therefore, the maximum laminar burning velocity increases marginally when 50% DMF is blended with isooctane due to the increased presence of H radicals in the flame. The negative temperature coefficient behaviour in the ignition delay time of the isooctane fuel vanishes when 30% DMF (v/v) is blended to it.
DOI: 10.6084/m9.figshare.6743006.v1
title: Effects of blending 2,5-dimethylfuran on the laminar burning velocity and ignition delay time of isooctane/air mixture

description: The prospects of 2,5-dimethylfuran (DMF) as a bio-derived fuel that can be blended with gasoline are believed to be impressive. However, the effects of blending DMF on the key combustion parameters like the laminar burning velocity and ignition delay time of gasoline/air mixture need to be studied extensively for the successful implementation of the fuel mixture in spark ignition engines. Therefore, a skeletal chemical kinetic mechanism, comprising of 999 reactions among 218 species, has been developed in the present work for this purpose. The proposed chemical kinetic model has been validated against a wide range of experimental data for the laminar burning velocity and ignition delay time of isooctane (representing gasoline), DMF and their blends. It has been found from the present study that the thermal diffusivity of the unburnt gas mixture changes by a very small amount from the corresponding value for the pure isooctane/air mixture when DMF is added. Unlike isooctane, the DMF molecule does not consume H radicals during its primary breakup. Therefore, the maximum laminar burning velocity increases marginally when 50% DMF is blended with isooctane due to the increased presence of H radicals in the flame. The negative temperature coefficient behaviour in the ignition delay time of the isooctane fuel vanishes when 30% DMF (v/v) is blended to it.
DOI: 10.6084/m9.figshare.6742979
title: Additional file 2: of Genome-wide association study of nocturnal blood pressure dipping in hypertensive patients

description: Table S1. Covariates used for calculation of night-to-day blood pressure ratio residuals in GENRES. Table S2. Meta-analysis of blood pressure dipping (night-to-day blood pressure ratio) in all three studies (n = 567). Table S3. Association of SNPs of circadian genes with blood pressure dipping (night-to-day blood pressure ratio) in GENRES. Table S4. Association of circadian genes with blood pressure dipping (night-to-day blood pressure ratio) in GENRES. Table S5. Replication of SNPs previously associated with blood pressure dipping in GENRES. Table S6. Functional analysis of the lead SNPs associated with blood pressure dipping (night-to-day blood pressure ratio) in GENRES GWAS. Table S7. Association of the top blood pressure dipping SNPs with selected UK Biobank GWAS phenotypes. (XLS 167 kb)
DOI: 10.6084/m9.figshare.6742979.v1
title: Additional file 2: of Genome-wide association study of nocturnal blood pressure dipping in hypertensive patients

description: Table S1. Covariates used for calculation of night-to-day blood pressure ratio residuals in GENRES. Table S2. Meta-analysis of blood pressure dipping (night-to-day blood pressure ratio) in all three studies (n = 567). Table S3. Association of SNPs of circadian genes with blood pressure dipping (night-to-day blood pressure ratio) in GENRES. Table S4. Association of circadian genes with blood pressure dipping (night-to-day blood pressure ratio) in GENRES. Table S5. Replication of SNPs previously associated with blood pressure dipping in GENRES. Table S6. Functional analysis of the lead SNPs associated with blood pressure dipping (night-to-day blood pressure ratio) in GENRES GWAS. Table S7. Association of the top blood pressure dipping SNPs with selected UK Biobank GWAS phenotypes. (XLS 167 kb)
DOI: 10.6084/m9.figshare.6742967
title: MOESM2 of HAM-TBS: high-accuracy methylation measurements via targeted bisulfite sequencing

description: Additional file 5. A table containing the genomic coordinates of the FKBP5 HAM-TBS panel including primer sequences and cycling conditions.
DOI: 10.6084/m9.figshare.6742967.v1
title: MOESM2 of HAM-TBS: high-accuracy methylation measurements via targeted bisulfite sequencing

description: Additional file 5. A table containing the genomic coordinates of the FKBP5 HAM-TBS panel including primer sequences and cycling conditions.
DOI: 10.15468/p5es47
title: A catalogue of the family Colletidae (Hymenoptera: Apoidea) of Eritrea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Madl, Michael (2018): A catalogue of the family Colletidae (Hymenoptera: Apoidea) of Eritrea. Linzer biologische Beiträge 50 (1): 661-663, DOI: http://doi.org/10.5281/zenodo.4004348
DOI: 10.6084/m9.figshare.6742916
title: MOESM1 of HAM-TBS: high-accuracy methylation measurements via targeted bisulfite sequencing

description: Additional file 1. A table containing the genomic coordinates of a smaller panel of 11 amplicons located within the FKBP5 locus. These amplicons were used to assess the source of potential biases as well as variability between replicates.
DOI: 10.6084/m9.figshare.6742916.v1
title: MOESM1 of HAM-TBS: high-accuracy methylation measurements via targeted bisulfite sequencing

description: Additional file 1. A table containing the genomic coordinates of a smaller panel of 11 amplicons located within the FKBP5 locus. These amplicons were used to assess the source of potential biases as well as variability between replicates.