cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14675364
title: Buchnera aphidicola genome annotation

description: Annotation of an assembly of the aphid (<i>Sitobion avenae</i>) endosymbiont <i>Buchnera aphidicola</i>. Assembly was generated from PacBio HiFi data using Flye<sup>1</sup> assembler (v2.8) and annotated using prokka<sup>2</sup>. The data was generated from an aphid clone (SA3) with partial resistance to insecticides.<br><sup>1</sup>Kolmogorov, M., Bickhart, D.M., Behsaz, B., Gurevich, A., Rayko, M., Shin, S.B., Kuhn, K., Yuan, J., Polevikov, E., Smith, T.P. and Pevzner, P.A., 2020. metaFlye: scalable long-read metagenome assembly using repeat graphs. <i>Nature Methods</i>, <i>17</i>(11), pp.1103-1110.<br><br><sup>2</sup>Seemann, T., 2014. Prokka: rapid prokaryotic genome annotation. <i>Bioinformatics</i>, <i>30</i>(14), pp.2068-2069.<br>
DOI: 10.25919/4ycc-fc11
title: Synthetic brain MRI dataset for testing of cortical thickness estimation methods

description: This dataset is suitable for the evaluation of cortical thickness estimation methods. The synthetic dataset consists of 400 T1-weighted (T1-w) brain MRI scans, corresponding Partial Volume (PV) maps of three tissue classes, grey matter (GM), white matter (WM) and cerebrospinal fluid (CSF), as well as surface meshes - pial and WM. For the dataset synthesis, 20 healthy control (HC) baseline subjects from the ADNI dataset, ten females and ten males, were used for the generation of 20 different atrophy levels per subject uniformly. The atrophy levels fall into two ranges, [0.01,0.1] mm, with the atrophy step rate of 0.01 mm [0.1,1] mm (ten levels), with the atrophy step rate of 0.1mm (ten levels). The baseline subjects were also reconstructed using the same method to minimise the measurement bias when computing cortical thickness.
DOI: 10.5281/zenodo.4594886
title: Visitation rate of four bee groups within the Calanques National park, Marseille, France

description: This dataset presents the number of visits and visitation rates realized by four wild bee groups (small bees - &lt; 10-12 mm, large bees &gt; 12 mmm, bumblebees and honey bees) on Mediterranean plant species. Data were collected during field surveys taking place from February to June in 2017 and 2018 in the Calanques National Park, Marseille, France on 17 sites. In each site (i.e. 100 m² plots), to maximize the record of bee visitation rates, we first determined the most flowered patches through a visual observation and then we chose the 3 one-square meters most flowered patches to observe plant-bee interactions. An observation consisted in the recording of the visitation rate of each bee group on each plant species in one meter square for 5 minutes per patch in 2017 and 10 minutes per patch in 2018. A session consisted of the sum of observations of all plant-bee interactions on the three one-square-meter patches (i.e. 15 min per plot in 2017 and 30 min per plot in 2018). Nine sessions were performed in 2017 per plot and 5 sessions in 2018 per plot for a total of 135 minutes of observations per plot in 2017 and 150 minutes of observations per plot in 2018. Observations were made between 8h00 and 18h00 and when weather conditions were favorable (no windy or rainy days). Data contains the plant species, the plant family, the site's name, coordinates in WGS84, the date, the week calendar number, the year, the number of visits realized by small bees, large bees, honeybees, bumblebees, period of observation, then visitation rates of each bee group, total plant richness and visited plant richness on each plot each session. Each line corresponds to a plant species observed during one observation. Each visit was counted when a bee plunged its head into the flower.
DOI: 10.5281/zenodo.5388190
title: Visitation rate of four bee groups within the Calanques National park, Marseille, France

description: This dataset presents the number of visits and visitation rates realized by four wild bee groups (small bees - &lt; 10-12 mm, large bees &gt; 12 mmm, bumblebees and honey bees) on Mediterranean plant species. Data were collected during field surveys taking place from February to June in 2017 and 2018 in the Calanques National Park, Marseille, France on 17 sites. In each site (i.e. 100 m² plots), to maximize the record of bee visitation rates, we first determined the most flowered patches through a visual observation and then we chose the 3 one-square meters most flowered patches to observe plant-bee interactions. An observation consisted in the recording of the visitation rate of each bee group on each plant species in one meter square for 5 minutes per patch in 2017 and 10 minutes per patch in 2018. A session consisted of the sum of observations of all plant-bee interactions on the three one-square-meter patches (i.e. 15 min per plot in 2017 and 30 min per plot in 2018). Nine sessions were performed in 2017 per plot and 5 sessions in 2018 per plot for a total of 135 minutes of observations per plot in 2017 and 150 minutes of observations per plot in 2018. Observations were made between 8h00 and 18h00 and when weather conditions were favorable (no windy or rainy days). Data contains the plant species, the plant family, the site's name, coordinates in WGS84, the date, the week calendar number, the year, the number of visits realized by small bees, large bees, honeybees, bumblebees, period of observation, then visitation rates of each bee group, total plant richness, visited plant richness on each plot each session and cover of each plant species in each site. Each line corresponds to a plant species observed during one observation. Each visit was counted when a bee plunged its head into the flower.
DOI: 10.6084/m9.figshare.14674071.v1
title: Buchnera aphidicola genome

description: An assembly of the aphid (<i>Sitobion avenae</i>) endosymbiont <i>Buchnera aphidicola</i>. Assembly was generated from PacBio HiFi data using Flye assembler (v2.8)<sup>1</sup>. The data was generated from an aphid clone (SA3) with partial resistance to insecticides.<br><sup>1</sup>Kolmogorov, M., Bickhart, D.M., Behsaz, B., Gurevich, A., Rayko, M., Shin, S.B., Kuhn, K., Yuan, J., Polevikov, E., Smith, T.P. and Pevzner, P.A., 2020. metaFlye: scalable long-read metagenome assembly using repeat graphs. <i>Nature Methods</i>, <i>17</i>(11), pp.1103-1110.<br>
DOI: 10.6084/m9.figshare.14674071
title: Buchnera aphidicola genome

description: An assembly of the aphid (<i>Sitobion avenae</i>) endosymbiont <i>Buchnera aphidicola</i>. Assembly was generated from PacBio HiFi data using Flye assembler (v2.8)<sup>1</sup>. The data was generated from an aphid clone (SA3) with partial resistance to insecticides.<br><sup>1</sup>Kolmogorov, M., Bickhart, D.M., Behsaz, B., Gurevich, A., Rayko, M., Shin, S.B., Kuhn, K., Yuan, J., Polevikov, E., Smith, T.P. and Pevzner, P.A., 2020. metaFlye: scalable long-read metagenome assembly using repeat graphs. <i>Nature Methods</i>, <i>17</i>(11), pp.1103-1110.<br>
DOI: 10.6084/m9.figshare.17098877.v2
title: Mass-wasting-inferred Variability of 130,000-year Indian Summer Monsoon Intensity from Deposits in the Southeast Tibetan Plateau

description: A large proportion (~80%) of the Indian subcontinent’s precipitation comes from the Indian summer monsoon (ISM), which influences one-fifth of the world’s population. A long-term reliable proxy for ISM is fundamental to understanding previous global climate change. We establish a mass-wasting-inferred proxy to examine the paleohydrogeology (river undercutting history) of the Southeast Tibetan Plateau and reconstruct the variability of ISM intensity (precipitation) in the past 130,000 years. Our data suggest that mass-wasting events, which provides us sufficient samples for paleoclimate research, are prone to dramatic climate changes, especially extreme climate environments. The Southeast Tibetan Plateau was subjected to at least four distinct ISM intensity phases in the past 130,000 years. We conclude that ISM intensity has a cyclicity featured by the Earth’s orbit with obliquity, and that ISM intensity transformation lags the global ice volume (sea level) change by 8–15 kyrs.
DOI: 10.5519/qd.m1uj2wbc
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (13 records)
DOI: 10.25721/xk3d-pm82
title: 25_020 - « RCP Aubrac; Bernard Lortat-Jacob; séjour du 27-2 au 3-3-1965;[Mardi-Gras] »
DOI: 10.25721/bnay-z832
title: 25_026 - Carnet de terrain CMD; « Aubrac 6-7 octobre 1963; carnet n°1 »
DOI: 10.26106/0pa4-j679
title: Most likely DNA sequence version 1.0 - concept
DOI: 10.25721/z4gn-3j48
title: 25_027 - Carnet de terrain CMD « RCP Aubrac I CMD; carnet n°2; 20.5-26-5 » 1964
DOI: 10.25721/17tq-8q20
title: 25_028 - Carnet de terrain CMD « RCP Aubrac II CMD; carnet n°3; juin-juillet 64 »
DOI: 10.6084/m9.figshare.17104430
title: Source file Shahneh et al.xlsx

description: Source data file underlying all Figures in Shahneh et al.
DOI: 10.6084/m9.figshare.17104430.v1
title: Source file Shahneh et al.xlsx

description: Source data file underlying all Figures in Shahneh et al.
DOI: 10.25721/nmwd-ws96
title: 25_029 - Carnet de terrain CMD « RCP Aubrac II CMD; carnet n°4; juin-juillet 64; 1 »
DOI: 10.25721/mc7b-kj18
title: 25_030 - Carnet de terrain CMD « RCP Aubrac II CMD; carnet n°5; juin-juillet 64; 2 »
DOI: 10.6084/m9.figshare.16535710.v1
title: Screening of natural compounds identifies ferutinin as an antibacterial and anti-biofilm compound

description: Antibacterial screenings are most commonly targeted at planktonic bacteria but less effort is dedicated to the exploration of agents acting on biofilms. Here, a natural compounds library was screened against <i>Staphylococcus aureus</i> using a 384-well plate platform to identify compounds preventing biofilm formation. Five structurally diverse hits were selected for follow-up studies: honokiol, tschimganidin, ferutinin, oridonin and deoxyshikonin. The compounds were evaluated against different bacterial species for their capacity to prevent and disrupt biofilms. The development of resistance and cytotoxicity were also investigated. Ferutinin displayed the best antibacterial activity, with a minimum inhibitory, bactericidal and biofilm preventive concentration of 25 µM against <i>S. aureus</i>. It efficiently disrupted pre-formed biofilms (over 5-log reduction of viable cells) and reduced biofilm formation on a catheter in the presence of neutrophils. This work provides new information on the antibacterial activity of five natural compounds and identified ferutinin as a promising candidate against <i>S. aureus</i> biofilms.
DOI: 10.6084/m9.figshare.16535710
title: Screening of natural compounds identifies ferutinin as an antibacterial and anti-biofilm compound

description: Antibacterial screenings are most commonly targeted at planktonic bacteria but less effort is dedicated to the exploration of agents acting on biofilms. Here, a natural compounds library was screened against <i>Staphylococcus aureus</i> using a 384-well plate platform to identify compounds preventing biofilm formation. Five structurally diverse hits were selected for follow-up studies: honokiol, tschimganidin, ferutinin, oridonin and deoxyshikonin. The compounds were evaluated against different bacterial species for their capacity to prevent and disrupt biofilms. The development of resistance and cytotoxicity were also investigated. Ferutinin displayed the best antibacterial activity, with a minimum inhibitory, bactericidal and biofilm preventive concentration of 25 µM against <i>S. aureus</i>. It efficiently disrupted pre-formed biofilms (over 5-log reduction of viable cells) and reduced biofilm formation on a catheter in the presence of neutrophils. This work provides new information on the antibacterial activity of five natural compounds and identified ferutinin as a promising candidate against <i>S. aureus</i> biofilms.
DOI: 10.6084/m9.figshare.15172789
title: Influence of infrastructure material composition and microtopography on marine biofilm growth and photobiology

description: The impact of concrete composition and roughness on the formation of microalgal biofilms and their photobiology were studied on marine infrastructures presenting four different compositions combined with two degrees of roughness (rough and smooth). The structures were first inoculated with a natural microphytobenthic biofilm and immersed in sterilised seawater with a controlled photoperiod for six days. Photosynthetic activity was assessed with an imaging PAM-(Pulse Amplitude Modulated) fluorometer and microtopography was monitored in parallel with a 3-D camera. The results indicated that roughness had an impact on the biofilm biomass, its physiological status and its photosynthetic efficiency and capacity. The assessment of surface roughness indicated that negative reliefs were preferably colonised by MPB (microphytobenthic) cells with better photosynthetic performances. Moreover, MPB biofilms showed better photoacclimation in these microhabitats than on the positive and smooth reliefs. This study confirms the importance of microhabitat for biofilm formation and their photobiology.
DOI: 10.6084/m9.figshare.15172789.v1
title: Influence of infrastructure material composition and microtopography on marine biofilm growth and photobiology

description: The impact of concrete composition and roughness on the formation of microalgal biofilms and their photobiology were studied on marine infrastructures presenting four different compositions combined with two degrees of roughness (rough and smooth). The structures were first inoculated with a natural microphytobenthic biofilm and immersed in sterilised seawater with a controlled photoperiod for six days. Photosynthetic activity was assessed with an imaging PAM-(Pulse Amplitude Modulated) fluorometer and microtopography was monitored in parallel with a 3-D camera. The results indicated that roughness had an impact on the biofilm biomass, its physiological status and its photosynthetic efficiency and capacity. The assessment of surface roughness indicated that negative reliefs were preferably colonised by MPB (microphytobenthic) cells with better photosynthetic performances. Moreover, MPB biofilms showed better photoacclimation in these microhabitats than on the positive and smooth reliefs. This study confirms the importance of microhabitat for biofilm formation and their photobiology.
DOI: 10.25721/qhde-av39
title: 25_031 - Carnet de terrain CMD « RCP Aubrac II CMD; carnet n°6; juin-juillet 64; 3 »
DOI: 10.25721/bs03-ts52
title: 25_032 - Carnet de terrain CMD « CMD; RCP Aubrac; 3e campagne ; oct. 64; carnet n°7 »
DOI: 10.25721/rmy4-mg50
title: 25_033 - Carnet de terrain CMD « CMD; RCP Aubrac; 3e campagne; oct. 64; carnet n°8 »
DOI: 10.25721/e682-zz23
title: 25_070 - Rapports de mission 1964 : juin-juillet (2e campagne; départ et retour)
DOI: 10.25721/e9sb-nx07
title: 25_072 - Rapports de mission 1964 : octobre (3e campagne; départ et retour)
DOI: 10.25721/eync-ez14
title: 25_050 - photographies de noces avec musiciens
DOI: 10.25721/9pap-fj88
title: 25_051 - Propositions d'acquisition : rapport au comité des conservateurs; 5 janv 67
DOI: 10.25721/ehg8-5225
title: 25_125 - Cahier d'inventaire des missions 1964-65 (pré-inventaire des fonds sonores, rédigé par B. Lortat-Jacob; recopié sur les registres officiels de la phonothèque)
DOI: 10.25721/sc55-ya74
title: 25_069 - Rapports de mission 1964 : mai (1re campagne; départ et retour)
DOI: 10.5517/ccdc.csd.cc28xw14
title: CCDC 2113116: Experimental Crystal Structure Determination

description: Related Article: Andrea Cornia, Andrea Nava, Valeria Lanzilotto, Giordano Poneti, Matteo Mannini, Roberta Sessoli
|2022|Inorg.Chim.Acta|531|120698|doi:10.1016/j.ica.2021.120698
DOI: 10.5517/ccdc.csd.cc28xw25
title: CCDC 2113117: Experimental Crystal Structure Determination

description: Related Article: Andrea Cornia, Andrea Nava, Valeria Lanzilotto, Giordano Poneti, Matteo Mannini, Roberta Sessoli
|2022|Inorg.Chim.Acta|531|120698|doi:10.1016/j.ica.2021.120698
DOI: 10.5517/ccdc.csd.cc28xw36
title: CCDC 2113118: Experimental Crystal Structure Determination

description: Related Article: Andrea Cornia, Andrea Nava, Valeria Lanzilotto, Giordano Poneti, Matteo Mannini, Roberta Sessoli
|2022|Inorg.Chim.Acta|531|120698|doi:10.1016/j.ica.2021.120698
DOI: 10.5517/ccdc.csd.cc28xw47
title: CCDC 2113119: Experimental Crystal Structure Determination

description: Related Article: Andrea Cornia, Andrea Nava, Valeria Lanzilotto, Giordano Poneti, Matteo Mannini, Roberta Sessoli
|2022|Inorg.Chim.Acta|531|120698|doi:10.1016/j.ica.2021.120698
DOI: 10.48544/654c0259-e4e5-49b5-8b12-509497fbd8ce
title: Professional responsibility
DOI: 10.15129/b4ad0c13-754a-420f-9877-91569ce987a2
title: Data for: "Modelling Harmonic Propagation in HVDC Cables"

description: This data sets contains MATLAB/Simulink file which was used for simulating harmonic propagation in HVDC network. This model can be used to simulate the propagation of background harmonics in HVDC network.
DOI: 10.5281/zenodo.5701844
title: Dataset first order masked AES 100k traces

description: Dataset AES-128 with first order masking (https://github.com/sca-research/ASM_MaskedAES). Details: - Random plaintexts and keys - Acquisition stops at the end of the first round - Labels are the masked output of the first Subbytes - Masks computation included in the traces Files : - "random_traces_i.pkl" is the pickle dump of 100k traces (5 * 20k) - "random_traces_test_0.pkl" is the pickle dump of 20k traces - 's1.npy' contains labels related to the first round subbytes output from the 100k dataset - 's1_test.npy' contains labels related to the first round subbytes output from the 20k dataset - 'timepoints_s1.npy' contains point of interest for the first round subbytes output.
DOI: 10.6084/m9.figshare.16965247
title: worker.mortality.csv

description: Worker mortality data<br>
DOI: 10.25345/c5957p
title: MassIVE MSV000088480 - GNPS_GC_NIE20121023_1-13_2021-12-2
title: detection of chemical toxins from soil by GC-MS, NIE series
DOI: 10.6084/m9.figshare.16965238.v1
title: worker.mass.csv

description: Worker mass data<br>
DOI: 10.6084/m9.figshare.16965238
title: worker.mass.csv

description: Worker mass data<br>
DOI: 10.6084/m9.figshare.16965235
title: worker.eclosure.csv

description: Worker eclosure data<br>
DOI: 10.6084/m9.figshare.16965235.v1
title: worker.eclosure.csv

description: Worker eclosure data<br>
DOI: 10.6084/m9.figshare.16965232
title: male.production.csv

description: Male production data<br>
DOI: 10.6084/m9.figshare.16965232.v1
title: male.production.csv

description: Male production data<br>
DOI: 10.6084/m9.figshare.16965223
title: male.mass.csv

description: Male mass data<br>
DOI: 10.6084/m9.figshare.16965223.v1
title: male.mass.csv

description: Male mass data<br>
DOI: 10.6084/m9.figshare.16965220
title: consumption.csv

description: Consumption data<br>
DOI: 10.6084/m9.figshare.16965214
title: colony.mass.csv

description: Colony mass data<br>
DOI: 10.6084/m9.figshare.16965214.v1
title: colony.mass.csv

description: Colony mass data<br>
DOI: 10.6084/m9.figshare.16965211.v1
title: colony.arrival.csv

description: Colony arrival data<br>
DOI: 10.6084/m9.figshare.16965211
title: colony.arrival.csv

description: Colony arrival data<br>
DOI: 10.6084/m9.figshare.16965208
title: brood.census.csv

description: Brood census data<br>
DOI: 10.6084/m9.figshare.16965208.v1
title: brood.census.csv

description: Brood census data<br>
DOI: 10.6084/m9.figshare.16965202
title: Watrobska et al._R Script

description: R Script<br>
DOI: 10.6084/m9.figshare.16965202.v1
title: Watrobska et al._R Script

description: R Script<br>
DOI: 10.5281/zenodo.5746769
title: msd-errors - Data for the LLZO figure

description: Data for the figure showing the diffusion and Arrhenius plots for a short simulation of LLZO. <br><br>Created using showyourwork from this GitHub repo.
DOI: 10.6084/m9.figshare.16965172
title: Watrobska et al._Data file descriptions.pdf

description: Descriptions of CSV data files and column contents<br>
DOI: 10.6084/m9.figshare.16965172.v1
title: Watrobska et al._Data file descriptions.pdf

description: Descriptions of CSV data files and column contents<br>
DOI: 10.5281/zenodo.5746632
title: Deep-Learning-Based Harmonization and Super-Resolution of Near-Surface Air Temperature from CMIP6 Models (1850-2100)

description: A long-term (1850-2100) monthly air temperature (tas) product with a spatial resolution of 0.5 degree. This is a merged product from 31 CMIP6 models using the Deep-learning model which reduce bias, spatial downscaling and data merge at the same time,. To facilitate user-friendly access and download the dataset is stored individually for each year in a separate file. These files contain one historical data (1850-2014) , four future scenarios data during 2015-2100 (SSP1-2.6, SSP2-4.5, SSP3-7.0, SSP5-8.5) and four future scenarios data in Australia . The dataset is stored in NetCDF format, containing the variable tas, representing air temperature, produced in centigrade (℃) as a unit. There are three dimensions included in the dataset: longitude, latitude, and time, with the longitude ranging from -179.75E to 179.75E, the latitude from -89.75N to 89.75N.
DOI: 10.5281/zenodo.5712922
title: Deep-Learning-Based Harmonization and Super-Resolution of Near-Surface Air Temperature from CMIP6 Models (1850-2100)

description: A long-term (1850-2100) monthly air temperature (tas) product with a spatial resolution of 0.5 degree. This is a merged product from 31 CMIP6 models using the Deep-learning model which reduce bias, spatial downscaling and data merge at the same time,. To facilitate user-friendly access and download the dataset is stored individually for each year in a separate file. These files contain one historical data (1850-2014) , four future scenarios data during 2015-2100 (SSP1-2.6, SSP2-4.5, SSP3-7.0, SSP5-8.5) and four future scenarios data in Australia . The dataset is stored in NetCDF format, containing the variable tas, representing air temperature, produced in centigrade (℃) as a unit. There are three dimensions included in the dataset: longitude, latitude, and time, with the longitude ranging from -179.75E to 179.75E, the latitude from -89.75N to 89.75N.
DOI: 10.15161/oar.it/74293
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.5281/zenodo.5746785
title: Supplementary

description: Supplementary table for article
DOI: 10.5281/zenodo.5746784
title: Supplementary

description: Supplementary table for article
DOI: 10.5281/zenodo.5746762
title: RuMedPrimeData

description: The Dataset contains anonymized data from outpatient visits to SSMU hospital. <br> Each visit has the following fields:<br> new_patient_id – patient identification;<br> new_event_id – visit identification;<br> new_event_time – date and time of the event (random for each patient);<br> symptoms – patient complains, registered by the doctor;<br> anamnesis – patient anamnesis;<br> ICD10 – illness code, assigned during the visit in accordance with ICD-10 classification;<br> <br> Text encoding - utf-8.<br> Number of visits – 7625.<br> Data is stored in Tab-Separated Values (TSV) format, File data.tsv (md5sum abc73e2b0e1fecb187e10152185b4c64).<br> Dataset version – 1.0<br> <br>
DOI: 10.5281/zenodo.5746810
title: msd-errors - Data for the LLZO figure

description: Data for the figure showing the diffusion and Arrhenius plots for a short simulation of LLZO. <br><br>Created using showyourwork from this GitHub repo.