cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13347599.v2
title: Tian et al., (2020) model data submitted to ERL

description: This is the model data submitted to ERL by Tian et al., which has not been accepted. Copyrights are belong to Feng Tian.
DOI: 10.6084/m9.figshare.14992158.v2
title: Data from: Repeatability of migratory behaviour suggests trade-off between size and survival in a wild iteroparous salmonid

description: This is the data for our manuscript titled "Repeatability of migratory behaviour suggests trade-off between size and survival in a wild iteroparous salmonid".
DOI: 10.17605/osf.io/ucms6
title: Population Estimates

description: Annual population estimates by municipality, age, and sex in Brazil (2000–2024).
DOI: 10.6084/m9.figshare.27430305.v3
title: HiQBind Dataset

description: HiQBind, a protein-ligand binding dataset that contains 18,160 unique PDB entries with binding affinity annotations, 32,275 protein-ligand complexes structures refined by HiQBind-WF workflow.hiqbind.tar.gz: Protein-Ligand complexes structures in HiQBindhiqbind_metadata.csv: Metadata for HiQBind datasethiqbind_sm_metadata.csv: Metadata for subset of HiQBind in which ligands all small moleculeshiqbind_poly_metadata.csv: Metadata for subset of HiQBind in which ligands are polyemersREADME.md: Description of the structural dataset and columns in the metadata csv file<br>
DOI: 10.6084/m9.figshare.14292143.v1
title: Green Hydrogen at regional level (NUTS2)

description: Hydrogen production in Europe at regional level (NUTS2) using water electrolysis and electricity from renewable energy resources (RES) such as solar photovoltaic, onshore/offshore wind and hydropower (green hydrogen). Technical potential of RES at regional and national level. Estimations of localised clean hydrogen production and the capacity to replace carbon-intensive hydrogen hubs with ones that use RES-based water electrolysis.
DOI: 10.15468/dl.jmue25
title: Occurrence Download

description: A dataset containing 3802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Wisteria floribunda (Willd.) DC.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3802 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013460-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29067482.v1
title: Intensity dataset from polarization modulation experiment at the free-electron laser

description: This dataset contains a full set of spatially resolved intensity measurements acquired during a phase scan experiment at an extreme ultraviolet (EUV) free-electron laser. The scan systematically varies the relative phase between orthogonal polarization components of the FEL beam. For each phase delay step, a 2D intensity map of the output beam was recorded.
DOI: 10.6084/m9.figshare.6086159.v3
title: 19-Class Satellite Scene Dataset

description: Source: http://www.escience.cn/people/yangwen/WHU-RS19.html
DOI: 10.6084/m9.figshare.154688.v8
title: Gas hydrate deposits: a primer

description: This graphic is a draft from an educational course I'm compiling about the Earth's natural gas reserves. It attempts to summarise what gas hydrates are and where they can be found, adn accompanies further graphics that explain the chemistry of hydrates. No attempt is made to quantify the amount of methane that might be present in these deposits globally - this is the subject of much uncertainty. Those interested in the details of resource size can refer to the sources listed in the graphic and GEA (2012). <em>Global Energy Assessment - Toward a Sustainable Future</em>. Cambridge University Press. I hope some will find this useful. Any comments, corrections and queries welcome.
DOI: 10.6084/m9.figshare.19149779.v1
title: Autonomous environment-adaptive microrobot swarm navigation enabled by deep learning-based real-time distribution planning (dataset)

description: The dataset used for training the DNNs in the work indicated by the title.
DOI: 10.6084/m9.figshare.13392809.v2
title: Plant mixtures balance C:N:P stoichiometry in diverse terrestrial ecosystems

description: Diversity effects on C:N:P
DOI: 10.6084/m9.figshare.8194148.v1
title: Corbett et al. 2019 S1PR3 promotes stress resilience source data

description: Source data from 2019 Nature Communications publication
DOI: 10.6084/m9.figshare.19160858.v1
title: Detailed experimental conditions for hyperparameter setting of feature extractor

description: This excel file contained detailed experimental conditions for hyperparameter setting of feature extractor.
DOI: 10.6084/m9.figshare.704442.v13
title: Comparison of Open Access Software Engineering and Information Systems Journals

description: This dataset is a comparison of peer reviewed, DOAJ-listed journals in Information Systems and Software Engineering. It has been employed in the upcoming article: Graziotin, D., Wang, X., & Abrahamsson, P. (2014). A framework for systematic analysis of open access journals and its application in software engineering and information systems. Scientometrics. In Press. We released it here as open data. Please contact the author of this dataset, Daniel Graziotin [graziotin AT inf DOT unibz DOT it] for corrections to the data. In case of correction request, please provide the correction itself and the source.
DOI: 10.6084/m9.figshare.28562342.v1
title: Numbers of beavers (Castor fiber) in the Czech Republic and their admission to the rehabilitation centres

description: The data contains information on the numbers of beavers (Castor fiber) in the Czech Republic and information about this species from rehabilitation centres - reasons for admission, length of stay, mortality and numbers of beavers released back into the wild.
DOI: 10.6084/m9.figshare.6450632.v3
title: Differentially expressed gene lists - Repeats

description: Files for 13 mutant lines, investigated for differentially expressed repeats, containing the repeat instances determined to be differentially expressed (using DESeq2).<br>see the README for more detail.<br>
DOI: 10.6084/m9.figshare.27129222.v1
title: Data associated with manuscript

description: Four databases are included in this file:File nematode tree was used to calculate nematode phylogenetic diversity.File nematode traits includes nematode functional traits, such as C-P value, Biomass, and Trophic Structure, to calculate nematode functional diversity.File nematode composition includes soil nematode communityFile environment factors includes soil factors and climate factors to explore the driving mechanisms of nematode diversity.<br>
DOI: 10.6084/m9.figshare.5981551.v1
title: Data from High, low, or familiar? Nest site preferences of experienced laying hens

description: Data from High, low, or familiar? Nest site preferences of experienced laying hens
DOI: 10.6084/m9.figshare.5123869.v1
title: Supplementary Material for: Ara h 2 and Ara h 6 Have Similar Allergenic Activity and Are Substantially Redundant

description: <b><i>Background:</i></b> The moderately homologous (approx. 60%) proteins Ara h 2 and Ara h 6 are the most potent peanut allergens. This study was designed to define the relative individual contributions of Ara h 2 and Ara h 6 to the overall allergenic activity of a crude peanut extract (CPE). <b><i>Methods:</i></b> Ara h 2 and Ara h 6 were removed from CPE by gel filtration chromatography. Ara h 2.01, Ara h 2.02 and Ara h 6 were further purified (&gt;99%). The potency of each allergen and the ability of these allergens to reconstitute the allergenic activity of CPE depleted of Ara h 2 and Ara h 6 was measured with RBL SX-38 cells sensitized with IgE from sensitized peanut allergic patients. <b><i>Results:</i></b> The potency of the native proteins were significantly different (p &lt; 0.0001) although not dramatically so, with a rank order of Ara h 2.01 &gt; Ara h 2.02 &gt; Ara h 6. The addition of either purified Ara h 2 or Ara h 6 independently at their original concentration to CPE depleted of both Ara h 2 and Ara h 6 restored 80–100% of the original CPE allergenic activity. Addition of both Ara h 2 and Ara h 6 consistently completely restored the allergenic activity of CPE. <b><i>Conclusions:</i></b> These studies indicate that either Ara h 2 or Ara h 6 independently can account for most of the allergenic activity in a CPE and demonstrate important redundancy in the allergenic activity of these related molecules.
DOI: 10.6084/m9.figshare.26388499.v9
title: Systematic review of the costs of reproduction in flowering plants

description: Costs of reproduction arise when investments into current reproduction reduce expected fitness gains from future reproduction. Although costs of reproduction in plants have been frequently studied, difficulties associated with estimating reproductive trade-offs for entire plants and estimating fitness-based trade-offs have complicated the full accounting of reproductive costs. In spite of these difficulties, an increasing number of studies using estimates of fitness have convincingly demonstrated fitness-based trade-offs, and therefore that reproductive costs are important for shaping plant life histories. However, not all studies have detected costs of reproduction, and ~90% of these were conducted in natural populations where controlling for variation in plant resource status is challenging. In contrast the previous findings, we found no clear evidence for differences in reproductive costs between the sexes of dioecious plants. Other aspects of reproductive costs remain poortly understood, including ecological costs of reproduction, the connections between somatic costs of reproduction and fitness, and how the male sex role influences reproductive costs. Progress will be enabled by the use of measurments that allow for easier comparisons across studies, and by more clearly distinguishing between the processes that contribute to current versus future reproduction.
DOI: 10.60893/figshare.jcp.26348233.v1
title: Si6Tip6

description: Cartesian coordinates
DOI: 10.6084/m9.figshare.26061349.v2
title: Body mass – biomass scaling modulates species keystone-ness to press perturbations

description: In this study, we systematically explored (1) the relationships between species’ topological and energetic traits and their keystone status, (2) how these relationships depend on the community biomass structure, and (3) how keystone-ness identified by linear approximations corresponds to the potentially nonlinear effects that species can have on their communities. To address these, we used empirical, mass-balanced Ecopath food webs as well as dynamic food web simulations generated using the Allometric Trophic Network (ATN) framework. These varied not only in complexity—such as species richness and connectance—but also in biomass structure, trending either bottom-heavy or top-heavy, i.e., scaling exponents of species’ body mass to biomass towards negative or positive. We defined keystone species as those that, when subjected to press perturbations, exert disproportionately large effects on the biomasses of all other species within the community. To quantify species’ keystone-ness, we employed two approaches. First, we derived the normalized inverse community matrix for both empirical and model-generated food webs at equilibrium, quantifying species’ keystone-ness as their per capita net effect, i.e., the net effect of a unit perturbation-induced change in the biomass of the perturbed species on the equilibrium biomasses of all other species. Second, for model food webs, we simulated species-specific press perturbations, either by reducing production gain or increasing metabolic loss, and measured the per capita community biomass change. We then examined the relationships between species’ topological and energetic traits and their keystone-ness, as well as how these relationships depend on the food webs’ biomass structure. We thereby evaluated the consistency between species’ (linearly approximated) per capita net effect and (potentially nonlinear) per capita community biomass change regarding conclusions on species’ keystone status.
DOI: 10.6084/m9.figshare.6852911.v5
title: AHBAdata

description: Data files required to process Allen Human Brain Atlas data:A. Arnatkeviciute, B.D. Fulcher, A. Fornito.A practical guide to linking brain-wide gene expression and neuroimaging data (in submission).Matlab code for processing these data files and reproducing our analyses is in the github repository (link below).Please refer to the README_AHBAdata.txt file for further details.NOTE1: Data has been updated on the 28th August 2018 - in the previous version gene ordering in the ROI x gene matrices did not correspond to the gene information provided in the probeInformation structure. Now this issue is fixed.NOTE2: Data has been updated on the 24th October 2018 to comply with changes made during the article revision. NOTE3: Data has been updated on the 31st December 2018 to comply with changes made during the article revision.<br>NOTE4: Data has been updated on the 7th April 2020. Two brain parcellations (and corresponding processed data) containing 100 and 250 regions per hemisphere were updated. NOTE5: Data has been updated on the 11th June 2020. Four Schaefer brain parcellations (and corresponding processed data) containing 100, 300, 500 and 1000 regions were added.
DOI: 10.6084/m9.figshare.13220735.v2
title: The Bacillus antharcis cgMLST scheme and the typing results of B. antharcis strains produced with ChewBBACA.

description: The folder contains the <i>Bacillus antharcis</i> cgMLST genes and the typing results of <i>B. anthracis</i> strains. The schema was originally created with SeqSphere and formatted for use with the chewBBACA software as an alternative command line-based open-source program for allele calling. The snakemake application of chewBBACA, called chewieSnake v3 was used, and the typing results are summarised in an html report written by Carlus Deneke. <br>This scheme is also available and can be used via PubMLST database (https://pubmlst.org/organisms/bacillus-cereus). <br>
DOI: 10.6084/m9.figshare.28893179.v1
title: Prediction uploaded on April 29 regarding the outcome of the Barcellona/Inter on April 30

description: Further details about the study are available at the following links:<br>https://osf.io/pcwah<br>https://osf.io/xsb9t
DOI: 10.6084/m9.figshare.3561936.v1
title: Data Paper. Data Paper

description: File List HeteropteraMorphometricTraits.txt (MD5: a1b2dd57f22c84ad491f4d27a7397db0) HeteropteraMorphometricTraitsRAW.txt (MD5: b961a75fd0f1e833dc01c6e93e424d83) Description Trait-based approaches have increased significantly in community ecology during the last decade. This is not least because studies on biodiversity–ecosystem functioning relationships became a major topic in ecology. Species’ functions in ecosystems are mediated by their traits. For a better understanding of the relationships between environmental drivers, the community composition of organisms and ecosystems functioning, it is crucial to understand how these relationships are mediated by the communities’ trait composition. While there are world-wide efforts to set up trait databases, most have so far focused on plants and species-poorer taxa such as birds or amphibians. In contrast, for insects, the large number of species makes the gathering of comparable trait data a challenging task. In addition, there is the danger that generic trait information, which is available from common textbooks, may not be sufficient to detect the response of insect communities to environmental change or the consequences of trait changes for ecosystem functioning. One method to overcome this is to take morphometric measurements of species. In this study we measured morphometric traits of a total of 179 Heteroptera species that were sampled by sweep-netting on a total of 150 managed grassland plots across three regions in Germany between 2008 and 2012. These plots represent the whole range of grassland management intensities from extensively used pastures to mown pastures to intensively managed and fertilized meadows. In this paper we provide a database of mean values of 23 morphometric measures across sex and morphotypes for each sampled Heteroptera species. Morphological traits are assumed to be related to their adaptation and function in the environment. Thus the relative morphometric traits can be used as proxies for ecological features of a species that may affect its performance or fitness. Our database can be used by future trait-based studies for developing and testing hypotheses of the functional significance of these traits. Examples include studying the functional responses of insect communities to environmental drivers or studying how the change in trait composition affects ecosystem processes. <i>Key words</i>: <i>antenna length; body shape; body size; eye size; femur shape; insects; land-use intensity; leg length; rostrum length; true bugs; wing length.</i>
DOI: 10.6084/m9.figshare.21202220.v1
title: Final dataset metadata

description: Metadata of the integrated dataset
DOI: 10.6084/m9.figshare.26503675.v4
title: RM ROADMAP survey dataset and codebook

description: This RM Roadmap survey aims to gather a comprehensive picture of the current situation of Research Managers (RMs) across Europe. In our understanding, the term RMs covers a wide range of experts at different professional levels bearing specific knowledge:to streamline/facilitate the planning, the development, management, administration, communication and valorisation of research and innovation,to ensure compliance with policy objectives, funding programme requirements, financial rules and legal regulations,to improve the efficiency and effectiveness of R&I projects/system, and/orto enhance the impact of R&I on the society.The reuslts of this survey will support setting of further goals, namely, the formulation of recommendations:on an inclusive definition and terminology including RM professional categories;on an RM career development framework;on an RM skill and competence matrix; as well ason a future RM training scheme.
DOI: 10.15468/dl.dwyh39
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9648 10.8496,26.9648 10.8496,26.9648 1.8496,35.9648 1.8496,35.9648 10.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013461-250525065834625/datasets/export for details.
DOI: 10.25452/figshare.plus.27208569.v1
title: <b>DDS4 - Dataset to evaluate Tuberculosis diagnosis by automatic sputum smear microscopy</b>

description: <b>DDS4 - Dataset to evaluate Tuberculosis diagnosis by automatic sputum smear microscopy</b>The number of acid-fast bacilli found in the sputum smear of the patient indicates the infectiousness of the patient. The grading scales for reporting the results from reading a smear are comprised of 5 classes: negative, scanty, 1+, 2+ and 3+ (Rieder et al, 2007).This dataset was generated to evaluate a proposal of Tb diagnosis by automatic sputum smear microscopy. It is composed of 250 sets of Extended Depth Focus (EDF) images of microscropy fields: 50 sets corresponding to the negative diagnostic class composed of 164 images; <br>50 sets corresponding to a scanty diagnosis composed of 164 images; <br>50 sets corresponding to a 1+ diagnosis composed of 164 images; <br>50 sets corresponding to a 2+ diagnosis composed of 82 images; and <br>50 sets corresponding to a 3+ diagnosis composed of 32 images. <br><br>This dataset was generated as a testing set used to evaluate automatic smear microscopy for Tb diagnosis. There is no annotation in these images.<br>The depth resolution of the images is 24 bits (true color images) and the dimensions are 1388 × 1040 pixels. The EDF images are digital images obtained by the fusion of a stack of 11 sputum smear images of the same microscopy field acquired at different focal depths.The folders are individually stored as tar.gz archives, for a total size of 49 GBH.L. Rieder, A. Van Deun, K. Man Kam, S. Jae Kim, T.M. Chonde, A. Trebucq, et al.Priorities for Tuberculosis Bacteriology Services in Low-Income Countries, vol. 2 (2007)
DOI: 10.6084/m9.figshare.27643425.v1
title: Sunscreen- characterisation.xlsx

description: This database provides characterization data for a biological sunscreen developed from Calendula arvensis extracts. It presents measurements of viscosity, peroxide value, ph and conductivity from the first day of production to 90 days.
DOI: 10.6084/m9.figshare.21916137.v1
title: Supplementary Material for: Novel Image-Guided Flexible-Probe Transbronchial Microwave Ablation for Stage 1 Lung Cancer

description: <b><i>Background:</i></b> Image-guided percutaneous thermal ablation is an established treatment option for early-stage lung cancer in medically inoperable patients but carries a high risk of pleura-related complications, particularly pneumothorax. <b><i>Objective:</i></b> This study aimed to determine if image-guided transbronchial microwave ablation (tMWA) is a feasible approach to treat peripheral stage 1 lung cancer. <b><i>Method:</i></b> A prospective, single-arm, multicenter study sought to enroll 40 adults who were medically inoperable or declined surgery for peripheral stage 1 lung tumors (≤20 mm). Ablation was performed using navigational bronchoscopy and a flexible MWA probe, guided by cone-beam CT with augmented fluoroscopy. Follow-up at 1, 6, and 12 months included CT imaging of the ablation zone and possible tumor recurrence, adverse events (AEs), pulmonary function, and quality of life. <b><i>Results:</i></b> Across 2 sites, 11 tumors (10 NSCLC, 1 carcinoid) were treated in 10 enrolled patients. Median tumor diameter was 13 × 14 mm (7–19 mm) and median minimum ablative margin was 11 mm (5–19 mm). Technical success and technique efficacy were achieved in all patients. No tumor recurrence was seen during 12-month follow-up. No pneumothorax, pleural effusion, or bronchopleural fistula were noted. Minor AEs included scant hemoptysis, pain, cough, and dyspnea. Two serious AEs occurred ≤30 days of ablation and included a COPD exacerbation (day 9) and a death of unknown cause (day 15). The death led the sponsor to halt enrollment. Pulmonary function and quality-of-life indices remained stable. <b><i>Conclusions:</i></b> Image-guided tMWA is a technically feasible approach for peripheral early-stage lung cancer but warrants further evaluation of safety and efficacy in larger cohorts.
DOI: 10.25452/figshare.plus.24667905.v2
title: DepMap 23Q4 Public

description: This DepMap release contains data from CRISPR knockout screens from project Achilles, as well as genomic characterization data from the CCLE project.For more information, please see README.txt.
DOI: 10.6084/m9.figshare.21299098.v1
title: File S2. A collection of custom scripts for bioinformatic processing, analysis and generating figures from Selection on embryonic haemoglobin in an elevational generalist songbird

description: Commented custom scripts for bioinformatics, analysis and producing figures. See Readme.txt file for a full description of each script.