cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4776381
title: Point cloud from terrestrial laser scanning of 6 trees in the grounds of West Dean Gardens, West Sussex, UK

description: Point clouds of 6 trees in the grounds of West Dean Gardens, West Sussex, UK. The trees are: English oak (<em>Quercus robur</em>)<em> </em>(SketchFab, Google Maps) situated in an open field and probably once pollarded (west-dean-oak-1.ply) Weeping willow (<em>Salix babylonica</em>) and a Cedar of Lebanon (<em>Cedras Libani</em>) (SketchFab, Google Maps) (west-dean-willow-and-cyprus.ply) Large English Oak (<em>Quercus robur</em>) with boughs touching the ground (SketchFab, Google Maps) (west-dean-oak-2.ply) An Orinetal plane (<em>Platanus orientalis</em>) and Horse chestnut (<em>Aesculus hippocastanum</em>) in the Spring Garden (SketchFab, Google Maps) (west-dean-spinrg-garden.ply). Data was captured on 9/9/2020 with a RIEGL VZ-400 terrestrial laser scanner. The weather was good, with little to no noticeable wind. Data is a binary PLY format with reflectance and deviation fields. Note these data still include some ground returns. Please acknowledge the data set authors if using this data.
DOI: 10.5281/zenodo.4776380
title: Point cloud from terrestrial laser scanning of 6 trees in the grounds of West Dean Gardens, West Sussex, UK

description: Point clouds of 6 trees in the grounds of West Dean Gardens, West Sussex, UK. The trees are: English oak (<em>Quercus robur</em>)<em> </em>(SketchFab, Google Maps) situated in an open field and probably once pollarded (west-dean-oak-1.ply) Weeping willow (<em>Salix babylonica</em>) and a Cedar of Lebanon (<em>Cedras Libani</em>) (SketchFab, Google Maps) (west-dean-willow-and-cyprus.ply) Large English Oak (<em>Quercus robur</em>) with boughs touching the ground (SketchFab, Google Maps) (west-dean-oak-2.ply) An Orinetal plane (<em>Platanus orientalis</em>) and Horse chestnut (<em>Aesculus hippocastanum</em>) in the Spring Garden (SketchFab, Google Maps) (west-dean-spinrg-garden.ply). Data was captured on 9/9/2020 with a RIEGL VZ-400 terrestrial laser scanner. The weather was good, with little to no noticeable wind. Data is a binary PLY format with reflectance and deviation fields. Note these data still include some ground returns. Please acknowledge the data set authors if using this data.
DOI: 10.6084/m9.figshare.7461434.v1
title: Inclusive growth through Saemaul Undong in Korea

description: Saemaul Undong (SMU) is a ‘comprehensive community development programme’ launched by the government of the Republic of Korea in 1970 to reduce the economic gap between rural and urban areas, and subsequently extended to urban factories, schools and offices. A series of SMU projects designed and operated on the principles of ‘by the people, for the people, and of the people’ contributed to inclusive growth in Korea by performing three core tasks of human civilization through people’s capacity-building: establishing ‘governance’, accumulating ‘social capital’ and practising ‘sustainability’. These SMU projects cultivated various value chains from production to processing and marketing that increased cooperation, expanded value added, reduced the gaps between rural and urban areas, mitigated gender inequality, and contributed to inclusive growth through an equitable sharing of the benefits.
DOI: 10.6084/m9.figshare.7461434
title: Inclusive growth through Saemaul Undong in Korea

description: Saemaul Undong (SMU) is a ‘comprehensive community development programme’ launched by the government of the Republic of Korea in 1970 to reduce the economic gap between rural and urban areas, and subsequently extended to urban factories, schools and offices. A series of SMU projects designed and operated on the principles of ‘by the people, for the people, and of the people’ contributed to inclusive growth in Korea by performing three core tasks of human civilization through people’s capacity-building: establishing ‘governance’, accumulating ‘social capital’ and practising ‘sustainability’. These SMU projects cultivated various value chains from production to processing and marketing that increased cooperation, expanded value added, reduced the gaps between rural and urban areas, mitigated gender inequality, and contributed to inclusive growth through an equitable sharing of the benefits.
DOI: 10.15468/s4vv4j
title: A new species of the genus Hippolyte (Decapoda: Caridea: Hippolytidae) from Singapore

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gan, Zhibin, Li, Xinzheng (2017): A new species of the genus Hippolyte (Decapoda: Caridea: Hippolytidae) from Singapore. Raffles Bulletin of Zoology 65: 207-212, DOI: http://doi.org/10.5281/zenodo.4502819
DOI: 10.25345/c5n81j
title: MassIVE MSV000087467 - Test revised merge-mascot-daemon with regular export_2pl
title: Test revised merge-mascot-daemon with regular export_2pl Test revised merge-mascot-daemon with regular export_2pl Test revised merge-mascot-daemon with regular export_2pl Test revised merge-mascot-daemon with regular export_2pl Test revised merge-mascot-daemon with regular export_2pl Test revised merge-mascot-daemon with regular export_2pl Test revised merge-mascot-daemon with regular export_2pl
DOI: 10.15132/10000160
title: Centrifuge dataset for screw pile installation and uplift

description: The dataset describes the installation and uplift loading of a screw piles in a sand bed prepared by dry pluviation. The full details of the procedure can be found in the related paper. 
The different phases of each test are described in Figure 1. The data sampling rate is equal to 10ms.
1.	The centrifuge is spun up to the final g-level (50g at mid-depth of the pile). 
2.	A period of rest (few minutes).
3.	Installation of the pile at a given advancement ratio (AR), defined as the vertical displacement of the pile per rotation, normalised by the helix pitch (helix height, measured at mid-plate). The rotation rate is fixed at 3RPM and the vertical rate depends on the AR.
4.	The torque motor is disengaged (torque is released) and another rest period is allowed.
5.	The pile is uplifted of 10mm at a rate of 1mm/min.
6.	(Optional) The pile is unscrewed up to the surface.
7.	The centrifuge is spun down.
The measured data are given at model scale and their units indicated between brackets.
1.	The vertical position [mm] of the pile, whose tip is initially one or two mm from the sand surface. The position is measured from the top and position downwards.
2.	The vertical force [kN] at the top of the pile, which is positive downwards (pile in compression).
3.	The torque [Nm] measured at the top of the pile, which is positive clockwise.
There is an offset for each measured data. The offset considered in the paper to zero the different measurements is the value measured at the end of the first rest period. A summary of all the tests main parameters is given in the summary Excel file.
DOI: 10.5519/qd.prasac7j
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (6 records)
DOI: 10.6084/m9.figshare.14062070
title: In Silico FN Fibril Assembly Data from Weinberg Saini Lemmon PLOS One

description: Data is the output from computational simulations of FN fibril formation. Each tab contains data for 100 simulations at each parameter set. Columns represent unloaded actin velocity (micron/s) and each row is the substrate stiffness (pN/nm). <br>Datasets for restretched fibrils are provided in the manuscript.
DOI: 10.6084/m9.figshare.14062070.v1
title: In Silico FN Fibril Assembly Data from Weinberg Saini Lemmon PLOS One

description: Data is the output from computational simulations of FN fibril formation. Each tab contains data for 100 simulations at each parameter set. Columns represent unloaded actin velocity (micron/s) and each row is the substrate stiffness (pN/nm). <br>Datasets for restretched fibrils are provided in the manuscript.
DOI: 10.6084/m9.figshare.14627853
title: numbers.json

description: JSON file containing a list of 1000 random numbers between the range of 0 and 100.
DOI: 10.6084/m9.figshare.14627844
title: SUPPLEMENTARY MATERIAL.docx

description: <b>A concise statement of the major contents</b> The study developed and validated a nomogram combining BMUS radiomics and the ACR TI-RADS. The predictive performance and stability of the nomogram was assessed with respect to discrimination, calibration and clinical application in the validation and entire cohort. The nomogram yielded an AUC of 0.889 and 0.849 in the training and validation cohort, and the calibration curve were better. Higher interobserver agreement and a significantly improved AUC, NRI and IDI were found. Used the nomogram cutoff, radiologists showed significantly decreased unnecessary FNA rate. The nomogram is an intuitive and convenient tool which could considerably improve the predictive performance of radiologists with different levels of experience and reduce the unnecessary FNA rate during the treatment of thyroid nodules. <b>Keywords </b>Thyroid nodule; Radiomics; Nomogram; Ultrasound; Prediction <b> </b> <b>Abstract</b><b></b> <b>Context:</b> Visual interpretation and radiomics of B-mode ultrasound (BMUS) images both show good performance in predicting the malignancy of thyroid nodules.<b> </b> <b>Objective:</b> Develop and validate a nomogram combining BMUS radiomics and the American College of Radiology (ACR) Thyroid Imaging Reporting and Data System (TI-RADS). <b>Design:</b> Retrospective cohort study <b>Methods:</b> A total of 451 pathologically proven thyroid nodules at our hospital (January 2019 to September 2020) were randomly assigned to training and validation cohorts (7:3 ratio). Combining the BMUS radiomics score (Rad-Score) with the average ACR TI-RADS score (ACR score) from a senior and junior radiologist, a nomogram was developed from the training group. The predictive performance and stability of the nomogram was assessed with respect to discrimination, calibration and clinical application in the validation and entire cohort. <b>Results</b> The nomogram yielded an AUC of 0.889 in the training cohort and 0.849 in the validation cohort, which were significantly better than the average ACR score alone (<i>p</i>=0.002 and &lt;0.001 respectively). The goodness of fit and calibration curve of the nomogram were both better than the ACR score. Higher interobserver agreement and a significantly improved AUC, net reclassification index (NRI) and integrated discriminatory improvement (IDI) of the nomogram were found compared with the corresponding ACR score, as independently scored by a senior and junior radiologist (all <i>p</i> &lt;0.001). <b>Conclusion</b> The nomogram is an intuitive and convenient tool that combines radiomics with the ACR TI-RADS, which could considerably and stably improve the predictive performance of radiologists with different levels of experience.
DOI: 10.15468/kct96g
title: Redescription of Hyphessobrycon flammeus Myers, 1924 (Ostariophysi: Characidae), a threatened species from Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Carvalho, Fernando R., de Jesus, Guilherme C., Langeani, Francisco (2014): Redescription of Hyphessobrycon flammeus Myers, 1924 (Ostariophysi: Characidae), a threatened species from Brazil. Neotropical Ichthyology 12 (2): 247-256, DOI: 10.1590/1982-0224-20130197, URL: http://dx.doi.org/10.1590/1982-0224-20130197
DOI: 10.5281/zenodo.4776448
title: CODE-AE Datasets

description: This repo includes the datasets that are used to benchmark the experiment results of the paper titled "Robust Prediction of Patient-Specific Clinical Response to Unseen Drugs From in vitro Screens Using Context-aware Deconfounding Autoencoder"
DOI: 10.5281/zenodo.4477673
title: CODE-AE Datasets

description: This repo includes the datasets that are used to benchmark the experiment results of the paper titled "Robust Prediction of Patient-Specific Clinical Response to Unseen Drugs From in vitro Screens Using Context-aware Deconfounding Autoencoder"
DOI: 10.15468/ry6r6x
title: A new species of Alycaeidae, Pincerna yanseni n. sp. from Sumatra, with the resurrection of the genus Pincerna Preston, 1907 (Gastropoda: Cyclophoroidea)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Páll-Gergely, Barna (2017): A new species of Alycaeidae, Pincerna yanseni n. sp. from Sumatra, with the resurrection of the genus Pincerna Preston, 1907 (Gastropoda: Cyclophoroidea). Raffles Bulletin of Zoology 65: 213-219, DOI: http://doi.org/10.5281/zenodo.4502847
DOI: 10.5281/zenodo.3965204
title: A calibrated groundwater model (Modflow-NWT) data repository in the Koga Irrigation Project area, Ethiopia

description: The repository includes the research data pertaining to the Modflow-NWT based groundwater model developed for the Koga irrigation project area, Ethiopia. The database constitutes three archived data folders namely, 1. MainData (mostly excel files which include model forcings, data used in model calibration, citizen science data, etc.), 2. GIS (mostly geospatial files to assist readers with the spatial locations of the irrigation project structures, as well as the important data and administrative locations), 3. ModelFiles (mostly text files which include model inputs and outputs). The data has been used in preparation of the manuscript titled, "A numerical framework to advance agricultural water management under hydrological stress conditions in a data scarce environment", published in the Agricultural Water Management journal (10.1016/j.agwat.2021.106947). Readers are requested to go through this article to find more details on the data. The model simulations ranged from 1st January 2008 to 15th August 2019.
DOI: 10.5281/zenodo.3965203
title: A calibrated groundwater model (Modflow-NWT) data repository in the Koga Irrigation Project area, Ethiopia

description: The repository includes the research data pertaining to the Modflow-NWT based groundwater model developed for the Koga irrigation project area, Ethiopia. The database constitutes three archived data folders namely, 1. MainData (mostly excel files which include model forcings, data used in model calibration, citizen science data, etc.), 2. GIS (mostly geospatial files to assist readers with the spatial locations of the irrigation project structures, as well as the important data and administrative locations), 3. ModelFiles (mostly text files which include model inputs and outputs). The data has been used in preparation of the manuscript titled, "A numerical framework to advance agricultural water management under hydrological stress conditions in a data scarce environment", published in the Agricultural Water Management journal (10.1016/j.agwat.2021.106947). Readers are requested to go through this article to find more details on the data. The model simulations ranged from 1st January 2008 to 15th August 2019.
DOI: 10.5281/zenodo.4729036
title: Earth, Space and Environmental Sciences Data Vocabulary, Ontology and Semantic Repositories_Services

description: Output from the ESIP/RDA Earth space and environmental sciences Interest Group (ESES IG). This spreadsheet is managed by the ESES IG here: https://docs.google.com/spreadsheets/d/1IJ3nXherJWW5wmpyHYkxQ_UHUJaSeney1fGHT0SasM0/edit?usp=sharing The session builds on the PARSEC co-located meeting at RDA Plenary 17. The PARSEC project is funded by the Belmont Forum, Collaborative Research Action on Science-Driven e-Infrastructures Innovation.
DOI: 10.5281/zenodo.4729035
title: Earth, Space and Environmental Sciences Data Vocabulary, Ontology and Semantic Repositories_Services

description: Output from the ESIP/RDA Earth space and environmental sciences Interest Group (ESES IG). This spreadsheet is managed by the ESES IG here: https://docs.google.com/spreadsheets/d/1IJ3nXherJWW5wmpyHYkxQ_UHUJaSeney1fGHT0SasM0/edit?usp=sharing The session builds on the PARSEC co-located meeting at RDA Plenary 17. The PARSEC project is funded by the Belmont Forum, Collaborative Research Action on Science-Driven e-Infrastructures Innovation.
DOI: 10.6084/m9.figshare.9810461.v1
title: Growth rate, extinction and survival amongst late Cenozoic bivalves of the North Atlantic

description: Late Cenozoic bivalve extinction in the North Atlantic area has been attributed to environmental deterioration. Within scallops and oysters – groups with a high growth rate – certain taxa which grew exceptionally fast became extinct, while others which grew slower survived. Those which grew exceptionally fast would have obtained protection from predators thereby, so their extinction may have been due to the detrimental effect of environmental change on growth rate and ability to avoid predation, rather than environmental change <i>per se</i>. We investigated some glycymeridid and carditid bivalves – groups with a low growth rate – to see whether extinct forms grew faster than extant forms. Extinct <i>Glycymeris subovata</i> grew at about the same rate as the slowest-growing living glycymeridid and much slower than late Cenozoic examples of extant <i>G. americana</i>, which grew at about the same rate as the fastest-growing living glycymeridid. Extinct <i>G. obovata</i> and extinct <i>Cardites squamulosa ampla</i> also grew slower than <i>G. americana</i>. These findings indicate that within bivalve groups with a low growth rate, extinction or survival of taxa through the late Cenozoic was not influenced by whether they were relatively fast or slow growers. By implication, environmental change acted directly to cause extinctions in these groups.
DOI: 10.6084/m9.figshare.9933551
title: Correlation of Pliocene and Pleistocene fossil assemblages from the central and eastern United States: toward a continental rodent biochronology

description: The ubiquitous presence and rapid evolution of rodents lend this group to the development of a correlational scheme for United States Cenozoic continental fossil deposits, equivalent to the later Cenozoic section of European MN zones. Expanding on earlier work in the Meade Basin of southwestern Kansas and Florida, Pliocene and Pleistocene mammal assemblages from the northern and southern Great Plains and the eastern United States are correlated based on rodent biostratigraphy. Eleven rodent zones (RZs) are constructed for the last 5 million years based on a new database including all rodent species assemblages during the study period. In addition to the 11 refined RZs that aid in temporal sequencing of unknown rodent assemblages, three broader biozones are recognised, including an early period characterised by the <i>Promimomys</i> immigration event and Hemphillian holdovers, a longer, relatively warm Pliocene to early Pleistocene period dominated by primitive cricetids and archaic arvicolids, and a final zone spanning the last two million years defined by the immigration and radiation of hypselodont <i>Microtus</i> and large, dentally advanced species of the cotton rat, <i>Sigmodon</i>. Modern rodent communities are established in the later part of Biozone 3, between about 0.6–0.3 Ma.
DOI: 10.6084/m9.figshare.9810461
title: Growth rate, extinction and survival amongst late Cenozoic bivalves of the North Atlantic

description: Late Cenozoic bivalve extinction in the North Atlantic area has been attributed to environmental deterioration. Within scallops and oysters – groups with a high growth rate – certain taxa which grew exceptionally fast became extinct, while others which grew slower survived. Those which grew exceptionally fast would have obtained protection from predators thereby, so their extinction may have been due to the detrimental effect of environmental change on growth rate and ability to avoid predation, rather than environmental change <i>per se</i>. We investigated some glycymeridid and carditid bivalves – groups with a low growth rate – to see whether extinct forms grew faster than extant forms. Extinct <i>Glycymeris subovata</i> grew at about the same rate as the slowest-growing living glycymeridid and much slower than late Cenozoic examples of extant <i>G. americana</i>, which grew at about the same rate as the fastest-growing living glycymeridid. Extinct <i>G. obovata</i> and extinct <i>Cardites squamulosa ampla</i> also grew slower than <i>G. americana</i>. These findings indicate that within bivalve groups with a low growth rate, extinction or survival of taxa through the late Cenozoic was not influenced by whether they were relatively fast or slow growers. By implication, environmental change acted directly to cause extinctions in these groups.
DOI: 10.6084/m9.figshare.9782804
title: <i>Chirotherium</i> and first Asian <i>Rhynchosauroides</i> tetrapod trackways from the Middle Triassic of Yunnan, China

description: The Middle Triassic (Anisian) Guanling Formation in Yunnan and Guizhou provinces, southwestern China, is well-known for its marine-reptile fauna with numerous well-preserved skeletons. Tetrapod footprints from this unit have been reported of both terrestrial and marine forms documenting a marginal marine environment in the eastern Tethys region. In particular <i>Chirotherium barthii</i>, an ichnospecies that is characteristic of the Middle Triassic (Anisian), was formerly described from the Guanling Formation of Guizhou Province. Recently chirotheriid tracks were also reported from deposits of this unit in Yunnan Province. Here we provide the first detailed documentation of this tracksite. Furthermore, we assign these trackways to the ichnospecies <i>Chirotherium barthii</i>, based on identical features in footprint morphology. Additionally, from the same surface, we describe the first tracks and trackways of the lacertoid ichnogenus <i>Rhynchosauroides</i> from the Asian continent. Trackmakers of <i>C. barthii</i> are non archosaurian archosauriforms or members of the archosaur crown-group, while <i>Rhynchosauroides</i> can be attributed either to lepidosauromorph or archosauromorph diapsids. The environment was a coastal area along the eastern Tethys, with marine, semi-aquatic and terrestrial tetrapods leaving their footprints in the carbonatic sediment of mudflats and lagoons when searching for food, that possibly consisted of small marine invertebrates or the small lacertoid forms being the prey of the larger archosaurs.
DOI: 10.6084/m9.figshare.9782804.v1
title: <i>Chirotherium</i> and first Asian <i>Rhynchosauroides</i> tetrapod trackways from the Middle Triassic of Yunnan, China

description: The Middle Triassic (Anisian) Guanling Formation in Yunnan and Guizhou provinces, southwestern China, is well-known for its marine-reptile fauna with numerous well-preserved skeletons. Tetrapod footprints from this unit have been reported of both terrestrial and marine forms documenting a marginal marine environment in the eastern Tethys region. In particular <i>Chirotherium barthii</i>, an ichnospecies that is characteristic of the Middle Triassic (Anisian), was formerly described from the Guanling Formation of Guizhou Province. Recently chirotheriid tracks were also reported from deposits of this unit in Yunnan Province. Here we provide the first detailed documentation of this tracksite. Furthermore, we assign these trackways to the ichnospecies <i>Chirotherium barthii</i>, based on identical features in footprint morphology. Additionally, from the same surface, we describe the first tracks and trackways of the lacertoid ichnogenus <i>Rhynchosauroides</i> from the Asian continent. Trackmakers of <i>C. barthii</i> are non archosaurian archosauriforms or members of the archosaur crown-group, while <i>Rhynchosauroides</i> can be attributed either to lepidosauromorph or archosauromorph diapsids. The environment was a coastal area along the eastern Tethys, with marine, semi-aquatic and terrestrial tetrapods leaving their footprints in the carbonatic sediment of mudflats and lagoons when searching for food, that possibly consisted of small marine invertebrates or the small lacertoid forms being the prey of the larger archosaurs.