cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13900512
title: Supplementary Tables on Gene Annotations of 49 Bacillariophyta Genome Assemblies

description: Supplementary Tables attaining to the manuscript entitled Annotation of protein-coding genes in 49 diatom genomes from the Bacillariophyta clade. These Supplementary Tables describe in part the data foundation and results of the actual annotation dataset that is available at https://doi.org/10.5281/zenodo.13767023.

Supplementary Table S1: Genome assemblies available at NCBI Datasets in June 2024.

Supplementary Table S2: Genome assemblies excluded from annotation.

Supplementary Table S3: Accession numbers of genome assemblies and RNAseq libraries used for annotating 49 diatom genomes. Table also lists repeat content of genome assemblies after masking with RepeatModeler2/RepeatMasker.

Supplementary Table S4: Software and container versions used for annotating 49 diatom genomes.

Supplementary Table S5: Summary of EnTAP functional annotation results. The actual functional annotations are included in the annotation dataset that is available at https://doi.org/10.5281/zenodo.13767023.
DOI: 10.15468/dl.q5y22k
title: Occurrence Download

description: A dataset containing 1501 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is USA.5_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Parkinsonia florida (Benth. ex A.Gray) S.Watson"
 ]
}

 The dataset includes 1501 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000974-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3vf9rw
title: Occurrence Download

description: A dataset containing 552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Pestalotiopsis palmarum (Cooke) Steyaert"
 ]
}

 The dataset includes 552 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000975-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dahj2p
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gastroboletus vividus Trappe & Castellano"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000977-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rkux7r
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Retinia sabiniana (Kearfott, 1907)"
 ]
}

 The dataset includes 73 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000976-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxcfjh
title: Occurrence Download

description: A dataset containing 22314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Lophocampa caryae Harris, 1841"
 ]
}

 The dataset includes 22314 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000978-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvj96r
title: Occurrence Download

description: A dataset containing 2762 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is USA.5_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Palafoxia arida B.L.Turner & M.I.Morris"
 ]
}

 The dataset includes 2762 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000979-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7g25j
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Moldova, Republic of",
 "OccurrenceStatus is Present",
 "TaxonKey is Buddleja davidii Franch."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000983-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxura3
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-95.51181 39.62813,-89.95669 39.62813,-89.95669 44.76361,-95.51181 44.76361,-95.51181 39.62813))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lynx rufus (Schreber, 1777)",
 "Year 1974-2024"
 ]
}

 The dataset includes 50 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000981-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fj5jeb
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nemoria lixaria (Guenée, 1857)",
 "Year 1000-1950"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000984-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83zck2
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Pestalotiopsis royenae (Guba) Steyaert"
 ]
}

 The dataset includes 30 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000985-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8mxp4
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nemoria lixaria (Guenée, 1857)",
 "Year 1000-1950"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000982-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnvy2m
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Retinia taedana (Miller, 1978)"
 ]
}

 The dataset includes 102 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000986-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32ksxy
title: Occurrence Download

description: A dataset containing 2723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is USA.5_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus monophylla Torr. & Frém."
 ]
}

 The dataset includes 2723 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000987-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujb3w3
title: Occurrence Download

description: A dataset containing 466 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Lophocampa ingens Edwards, 1881"
 ]
}

 The dataset includes 466 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000989-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ee2pb5
title: Occurrence Download

description: A dataset containing 4661 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Danaus plexippus plexippus",
 "Year 1990-2024"
 ]
}

 The dataset includes 4661 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000990-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vc76z3
title: Occurrence Download

description: A dataset containing 245 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyloscirtus armatus (Boulenger, 1902)"
 ]
}

 The dataset includes 245 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000988-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cshv2b
title: Occurrence Download

description: A dataset containing 1234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Illinois Natural History Survey Insect Collection, Snow Entomological Museum Collection, Florida State Collection of Arthropods, hymenoptera, Florida State Collection of Arthropods, Bee Biology and Systematics Laboratory, Entomology Division, Yale Peabody Museum, University of Michigan Museum of Zoology, Division of Insects, Field Museum of Natural History (Zoology) Insect, Arachnid and Myriapod Collection)",
 "Geometry POLYGON((-96.07477 35.6685,-88.97008 35.6685,-88.97008 40.76614,-96.07477 40.76614,-96.07477 35.6685))",
 "TaxonKey is Colletes Latreille, 1802"
 ]
}

 The dataset includes 1234 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000991-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4juce
title: Occurrence Download

description: A dataset containing 1577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is USA.5_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pluchea sericea (Nutt.) Coville"
 ]
}

 The dataset includes 1577 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000992-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mfajcb
title: Occurrence Download

description: A dataset containing 200 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptodactylus griseigularis (Henle, 1981)"
 ]
}

 The dataset includes 200 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000993-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kyb79y
title: Occurrence Download

description: A dataset containing 7179408 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Peru"
 ]
}

 The dataset includes 7179408 records from 278 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000961-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u895qj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Rhabdocline epiphylla (A.K.Parker & J.Reid) J.K.Stone & Gernandt"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000994-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwqp4w
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Pestalotiopsis thujicola (J.L.Maas) Y.Suto & Tak.Kobay."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000995-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2f62lb
title: CCDC 2240171: Experimental Crystal Structure Determination

description: Related Article: Jun-Ting Mo, Zheng Wang, Xian-Yan Xu, Dieter Fenske, Mei Pan, Cheng-Yong Su|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fctzm
title: CCDC 2245701: Experimental Crystal Structure Determination

description: Related Article: Ryoji Tanaka|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fdc18
title: CCDC 2246199: Experimental Crystal Structure Determination

description: Related Article: Chih-Chieh Wang, Pei-Juan Liao, Yu-Chen Chung, Chi-Yang Shin, Yi-Chen Wu, Gene-Hsiang Lee, Su-Ying Chien, Bo-Hao Chen, Yu-Chun Chuang|2024|ACS Omega|9|40920|doi:10.1021/acsomega.4c06176
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fdc29
title: CCDC 2246200: Experimental Crystal Structure Determination

description: Related Article: Chih-Chieh Wang, Pei-Juan Liao, Yu-Chen Chung, Chi-Yang Shin, Yi-Chen Wu, Gene-Hsiang Lee, Su-Ying Chien, Bo-Hao Chen, Yu-Chun Chuang|2024|ACS Omega|9|40920|doi:10.1021/acsomega.4c06176
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fdc3b
title: CCDC 2246201: Experimental Crystal Structure Determination

description: Related Article: Chih-Chieh Wang, Pei-Juan Liao, Yu-Chen Chung, Chi-Yang Shin, Yi-Chen Wu, Gene-Hsiang Lee, Su-Ying Chien, Bo-Hao Chen, Yu-Chun Chuang|2024|ACS Omega|9|40920|doi:10.1021/acsomega.4c06176
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fdc4c
title: CCDC 2246202: Experimental Crystal Structure Determination

description: Related Article: Chih-Chieh Wang, Pei-Juan Liao, Yu-Chen Chung, Chi-Yang Shin, Yi-Chen Wu, Gene-Hsiang Lee, Su-Ying Chien, Bo-Hao Chen, Yu-Chun Chuang|2024|ACS Omega|9|40920|doi:10.1021/acsomega.4c06176
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ff96d
title: CCDC 2247103: Experimental Crystal Structure Determination

description: Related Article: Li Jun-Long and Huang Hua |2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fgz52
title: CCDC 2248714: Experimental Crystal Structure Determination

description: Related Article: Malik Williams|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fgzrn
title: CCDC 2248732: Experimental Crystal Structure Determination

description: Related Article: Malik Williams|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fh9s1
title: CCDC 2249043: Experimental Crystal Structure Determination

description: Related Article: Malik Williams|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fhltc
title: CCDC 2249323: Experimental Crystal Structure Determination

description: Related Article: Malik Williams|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fr0cl
title: CCDC 2256439: Experimental Crystal Structure Determination

description: Related Article: Imogen L. Christopher, Xiaojiao Liu, Hayleigh J. Lloyd, Craig L. Bull, Nicholas P. Funnell, Peter Portius, Adam A. L. Michalchuk, Stuart R. Kennedy, Colin R. Pulham, Carole A. Morrison|2024|Phys.Chem.Chem.Phys.(PCCP)|26|16859|doi:10.1039/D4CP01595A
description: Related Article: Xiaojiao Liu|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g4sxb
title: CCDC 2268732: Experimental Crystal Structure Determination

description: Related Article: Kenta Koyamada, Kazunori Miyamoto, Masanobu Uchiyama |2024|Nat. Synth.|3|1083|doi:10.1038/s44160-024-00572-y
description: Related Article: Kenta Koyamada|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g4twb
title: CCDC 2268762: Experimental Crystal Structure Determination

description: Related Article: Kenta Koyamada, Kazunori Miyamoto, Masanobu Uchiyama |2024|Nat. Synth.|3|1083|doi:10.1038/s44160-024-00572-y
description: Related Article: Kenta Koyamada|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gffs4
title: CCDC 2277036: Experimental Crystal Structure Determination

description: Related Article: Malik Williams|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.