cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3608393_d8
title: Additional file 4: of Identification of apoptosis-related microRNAs and their target genes in myocardial infarction post-transplantation with skeletal myoblasts

description: Table S4. Primary data of microRNA arrays in rat hart simples. 1, Sham group; 2, MI group; 3, SkM group.
DOI: 10.6084/m9.figshare.c.3608393_d7
title: Additional file 6: of Identification of apoptosis-related microRNAs and their target genes in myocardial infarction post-transplantation with skeletal myoblasts

description: Table S6. Primary data of mRNA arrays in rat hart simples. 1, Sham group; 2, MI group; 3, SkM group
DOI: 10.6084/m9.figshare.c.3608432_d2
title: Additional file 3: of Knowledge, attitudes and practices towards antibiotic use in upper respiratory tract infections among patients seeking primary health care in Singapore

description: Codebook for dataset supplied. The codebook for interpretation of Material B, the data provided. (XLSX 11 kb)
DOI: 10.15468/dl.y2b46u
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinnotheridae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 165 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032859-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3607442_d3
title: Additional file 1: of Proteomic analysis of maize grain development using iTRAQ reveals temporal programs of diverse metabolic processes

description: Total proteins identified in maize grains (XLSX 745Â kb)
DOI: 10.6084/m9.figshare.c.3607442_d2
title: Additional file 4: of Proteomic analysis of maize grain development using iTRAQ reveals temporal programs of diverse metabolic processes

description: The DEPs were allocated to functional categories and cluster membership (XLSX 166Â kb)
DOI: 10.6084/m9.figshare.c.3607442_d1
title: Additional file 3: of Proteomic analysis of maize grain development using iTRAQ reveals temporal programs of diverse metabolic processes

description: The homologs of uncharacterized proteins in maize grains (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.c.3607361_d1
title: Additional file 2: Dataset S1. of Messenger RNA exchange between scions and rootstocks in grafted grapevines

description: Summary of RNA-Seq and genome resequencing. Dataset S2. Summary of RNA-Seq reads detected in the donors (source) and receptors of various grafts. Dataset S3. Over-represented GO processes of the genes producing mobile mRNAs detected in different growth conditions, genotypes and tissue types. Dataset S4. Mobile mRNAs detected for the genes encoding transcription factors and hormone-related genes in this study. Dataset S5. Summary of over-represented GO terms in various in vitro grafts. Dataset S6. Summary of over-represented GO terms in various field grafts. Dataset S7. Over-represented GO terms of graft transmitting genes shared by grapevine and Arabidopsis. (XLSX 896Â kb)
DOI: 10.6084/m9.figshare.c.3607298_d4
title: Additional file 4: Table S4. of Variation detection based on next-generation sequencing of type Chinese 1 strains of Toxoplasma gondii with different virulence from China

description: All the chosen genes and variations in those gene. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3606419_d2
title: Additional file 1: of Transcriptional response to sulfide in the Echiuran Worm Urechis unicinctus by digital gene expression analysis

description: The list of differentially expressed genes for Urechis unicinctus in response to sulfide. (XLSX 606Â kb)
DOI: 10.6084/m9.figshare.c.3606419_d1
title: Additional file 2: of Transcriptional response to sulfide in the Echiuran Worm Urechis unicinctus by digital gene expression analysis

description: The data of pathways analysis for differentially expressed genes of Urechis unicinctus in response to sulphide. (XLSX 44Â kb)
DOI: 10.15468/dl.7ftg9e
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alloposidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032860-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3605207_d2
title: MOESM2 of Proteomic and metabolomic analyses reveal metabolic responses to 3-hydroxypropionic acid synthesized internally in cyanobacterium Synechocystis sp. PCC 6803

description: Additional file 2: Table S1. Proteins up-regulated in 3-HP production SM strain. Table S2. Hypothetical and unclassified proteins up-regulated in 3-HP production SM strain. Table S3. Strains and plasmids used in this study. Table S4. Primers used in this study.
DOI: 10.6084/m9.figshare.c.3605084_d16
title: Additional file 2: of Comprehensive characterization of a time-course transcriptional response induced by autotoxins in Panax ginseng using RNA-Seq

description: All the annotation information for the assembled transcripts. (XLS 26730Â kb)
DOI: 10.6084/m9.figshare.c.3605084_d15
title: Additional file 5: of Comprehensive characterization of a time-course transcriptional response induced by autotoxins in Panax ginseng using RNA-Seq

description: The lists for all the differentially expressed genes. (XLS 1362Â kb)
DOI: 10.6084/m9.figshare.c.3604010_d3
title: Additional file 3: Figure S3. of Tumor invasion depth is a useful pathologic assessment for predicting outcomes in cervical squamous cell carcinoma after neoadjuvant radiotherapy

description: Association of overall survival (OS) (A) and progression-free survival (PFS) (B) curves show a clear difference between patient outcomes according to response evaluation criteria in solid tumors (RECIST1.1). Note: CR: Complete response, PR: Partial response, PD: Progressive disease, SD: Stable disease. (ZIP 399Â kb)
DOI: 10.6084/m9.figshare.c.3604010_d2
title: Additional file 1: Figure S1. of Tumor invasion depth is a useful pathologic assessment for predicting outcomes in cervical squamous cell carcinoma after neoadjuvant radiotherapy

description: Association of overall survival (OS) and progression-free survival (PFS) with the post-operative “y” Pathologic stage. (A) OS and (B) PFS curves show a slight difference with different post-operative “y” Pathologic staging after the radical hysterectomy. Note: Post-operative pathologic FIGO stage *: FIGO staging no longer includes Stage 0 (Tis). (ZIP 544 kb)
DOI: 10.6084/m9.figshare.c.3604010_d1
title: Additional file 2: Figure S2. of Tumor invasion depth is a useful pathologic assessment for predicting outcomes in cervical squamous cell carcinoma after neoadjuvant radiotherapy

description: Association of overall survival (OS) (A) and progression-free survival (PFS) (B) curves show a clear difference between patient outcomes according to the WHO double diameters measurement evaluation. Note: CR: Complete response, PR: Partial response, PD: Progressive disease, SD: Stable disease. (ZIP 423Â kb)
DOI: 10.6084/m9.figshare.c.3602909_d3
title: Additional file 4: of 
                     De novo transcriptome sequencing and comprehensive analysis of the drought-responsive genes in the desert plant Cynanchum komarovii

description: The list of all functional annotation DEGs. (XLSX 680 kb)
DOI: 10.6084/m9.figshare.c.3602867_d2
title: Additional file 1: Table S1. of Transcriptome analysis reveals the genetic basis underlying the seasonal development of keratinized nuptial spines in Leptobrachium boringii

description: The statistics and quality of reads throughout all samples in the Leptobrachium boringii transcriptome. Table S2. Significant enrichment of GO terms in the three tissues. Table S3. Differentially expressed genes in the upper jaw skin. Table S4. Differentially expressed genes in the testis. Table S5. Differentially expressed genes in the brain. Table S6. Top 10 most differentially expressed genes in testis and brain of Leptobrachium boringii. Table S7. Specific primers used for quantitative PCR validation. (XLSX 769Â kb)
DOI: 10.6084/m9.figshare.c.3602909_d1
title: Additional file 1: of 
                     De novo transcriptome sequencing and comprehensive analysis of the drought-responsive genes in the desert plant Cynanchum komarovii

description: Summary of the GO classifications of assembled unigenes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3602831_d6
title: MOESM2 of Switchgrass SBP-box transcription factors PvSPL1 and 2 function redundantly to initiate side tillers and affect biomass yield of energy crop

description: Additional file 2: Table S2. List of SPL sequences for phylogenetic analysis.
DOI: 10.6084/m9.figshare.c.3602831_d5
title: MOESM1 of Switchgrass SBP-box transcription factors PvSPL1 and 2 function redundantly to initiate side tillers and affect biomass yield of energy crop

description: Additional file 1: Table S1. Molecular characterization of PvSPLs.
DOI: 10.6084/m9.figshare.c.3602831_d4
title: MOESM7 of Switchgrass SBP-box transcription factors PvSPL1 and 2 function redundantly to initiate side tillers and affect biomass yield of energy crop

description: Additional file 7: Table S4. Primer sequences used for gene expression analysis by qRT-PCR and plasmid construction.
DOI: 10.6084/m9.figshare.c.3602660_d26
title: Additional file 8: Table S4. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of proteins identified in naĂŻve CD4+ T cells. (XLSX 634 kb)
DOI: 10.6084/m9.figshare.c.3602660_d23
title: Additional file 6: Table S3. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of known and novel miRNAs identified in naĂŻve CD4+ T cells. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3602660_d21
title: Additional file 5: Table S2. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of novel transcripts and novel spliced isoforms identified in naĂŻve CD4+ T cells. (XLSX 9927 kb)
DOI: 10.15468/dl.9nwdcn
title: Occurrence Download

description: A dataset containing 458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Majidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 458 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032861-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3601907_d3
title: Additional file 2: Table S3. of Identification and functional characterization of the sulfate transporter gene GmSULTR1;2b in soybean

description: Annotations of 227 genes with changes in expression levels greater than 2-fold. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3601907_d4
title: Additional file 4: Table S6. of Identification and functional characterization of the sulfate transporter gene GmSULTR1;2b in soybean

description: The 123 KEGG pathways associated with the 219 genes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3601892_d2
title: Additional file 1: Dataset S1. of Molecular and geographic evolutionary support for the essential role of GIGANTEAa in soybean domestication of flowering time

description: Detailed information of soybeans used in the present work. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3601886_d1
title: Additional file 2: of The emergence of DNA in the RNA world: an in silico simulation study of genetic takeover

description: gt1-dx. This file is an executable version of our simulation interface program, which has been tested under the platform of MS-Windows XP and MS-Windows 7.0. (EXE 3434 kb)
DOI: 10.6084/m9.figshare.c.3601856_d1
title: Additional file 1: Table S1. of Comparative transcriptional profile of the fish parasite Cryptocaryon irritans

description: Primers used in this study. Table S2. Gene annotation using ciliate databases. Table S3. Gene annotation using NR database. Table S4. GO function annotation. Table S5. KEGG annotation. Table S6. Number of DEGs in clusters. (XLSX 2815Â kb)
DOI: 10.6084/m9.figshare.c.3600422_d7
title: Additional file 2: Table S2. of Whole-genome transcription and DNA methylation analysis of peripheral blood mononuclear cells identified aberrant gene regulation pathways in systemic lupus erythematosus

description: Downregulated genes in PBMC of SLE patients compared with normal controls by microarray analysis. S2-1 showed the complete list of 550 downregulated genes in SLE. Three group comparisons, SLE (LN− and LN+) vs. NC (S2-2), SLE LN− vs. NC (S2-3), and SLE LN+ vs. NC (S2-4), were performed to identify downregulated genes by fold change (FC) &gt; 1.2 and p
DOI: 10.6084/m9.figshare.c.3600422_d6
title: Additional file 1: Table S1. of Whole-genome transcription and DNA methylation analysis of peripheral blood mononuclear cells identified aberrant gene regulation pathways in systemic lupus erythematosus

description: Upregulated genes in PBMC of SLE patients compared with normal controls by microarray analysis. S1-1 showed the complete list of 552 upregulated genes in SLE. Three group comparisons in gene expression, SLE (LN− and LN+) vs. NC (S1-2), SLE LN− vs. NC (S1-3), and SLE LN+ vs. NC (S1-4), were performed to identify upregulated genes by fold change (FC) &gt; 1.2 and p
DOI: 10.6084/m9.figshare.c.3600422_d5
title: Additional file 4: Table S4. of Whole-genome transcription and DNA methylation analysis of peripheral blood mononuclear cells identified aberrant gene regulation pathways in systemic lupus erythematosus

description: Hypomethylated CpG sites in PBMC of SLE patients comparing normal controls by genome-wide DNA methylation analysis. Three group comparisons, SLE LN+ vs. NC (S4-1), SLE LN− vs. NC (S4-2), and SLE (LN− and LN+) vs. NC (S4-3), were performed to identify hypomethylated CpG sites by fold change (FC) &gt; 1.2 and q value
DOI: 10.6084/m9.figshare.c.3600422_d4
title: Additional file 3: Table S3. of Whole-genome transcription and DNA methylation analysis of peripheral blood mononuclear cells identified aberrant gene regulation pathways in systemic lupus erythematosus

description: Hypermethylated CpG sites in PBMC of SLE patients comparing normal controls by genome-wide DNA methylation analysis. Three group comparisons, SLE LN+ vs. NC (S3-1), SLE LN− vs. NC (S3-2), and SLE (LN− and LN+) vs. NC (S3-3), were performed to identify hypermethylated DNA CpG sites by fold change (FC) &gt; 1.2 and q value
DOI: 10.26180/27824133
title: IR rawdata

description: The raw data of FT-IR for all the experiments
DOI: 10.15468/dl.geyhv9
title: Occurrence Download

description: A dataset containing 1468 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ophiuridae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1468 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032862-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3599819_d1
title: Additional file 2: Table S1. of Local compartment changes and regulatory landscape alterations in histone H1-depleted cells

description: The number of loci at which changes are observed for various combinations of epigenetic marks. (XLS 13 kb)
DOI: 10.6084/m9.figshare.c.3598391_d6
title: Additional file 5: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

description: List of DEGs analyzed by qRT-PCR. A total of 34 genes involved in the flavonoid, theanine and caffeine biosynthesis pathways were analyzed by qRT-PCR. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3598391_d5
title: Additional file 4: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

description: Information about the genes involved in the flavonoid, theanine and caffeine biosynthesis pathways. Unigenes involved in three metabolic pathways were annotated by alignment to the Swiss-Prot, COG and KEGG databases with e-values less than 1 × 10−30. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.c.3598391_d3
title: Additional file 7: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

description: Distribution of DEGs under positive selection in annotated pathways. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3598391_d4
title: Additional file 3: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

description: The rich factors and number of genes involved in each pathway derived from a comparison of gene expression in TBvsTL, OTBvsOTL, TBvsOTB and TL2vsOTL2. TBvsOTB stands for tea buds versus oil tea buds, TBvsTL for tea buds versus tea leaves, TLvsOTL for tea leaves versus oil tea leaves and OTBvsOTL for oil tea buds versus leaves. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3598391_d1
title: Additional file 1: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

description: Annotation of assembled unigenes of tea and oil tea. (XLSX 16149Â kb)
DOI: 10.6084/m9.figshare.c.3598370_d4
title: MOESM4 of Transcriptional profiling reveals molecular basis and novel genetic targets for improved resistance to multiple fermentation inhibitors in Saccharomyces cerevisiae

description: Additional file 4: Table S3. Transcriptional analysis and GO analysis of consensus genes.
DOI: 10.6084/m9.figshare.c.3598370_d1
title: MOESM3 of Transcriptional profiling reveals molecular basis and novel genetic targets for improved resistance to multiple fermentation inhibitors in Saccharomyces cerevisiae

description: Additional file 3: Table S2. Transcriptional analysis and GO analysis of the inhibitor-resistant strain to different stress conditions.
DOI: 10.6084/m9.figshare.c.3598370_d2
title: MOESM2 of Transcriptional profiling reveals molecular basis and novel genetic targets for improved resistance to multiple fermentation inhibitors in Saccharomyces cerevisiae

description: Additional file 2: Table S1. Transcriptional analysis and GO analysis of the wild-type strain to different stress conditions.
DOI: 10.6084/m9.figshare.c.3598283_d6
title: Additional file 5: Table S2. of The influence of a short-term gluten-free diet on the human gut microbiome

description: Relation of smoking and microbiome composition. (XLSX 9 kb)
DOI: 10.15468/dl.cvrgxy
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fritillaria delavayi Franch."
 ]
}

 The dataset includes 118 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032864-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ab2ky
title: Occurrence Download

description: A dataset containing 706 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyperiidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 706 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032863-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3597131_d11
title: Additional file 12: Table S10. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597131_d8
title: Additional file 15: Table S13. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597131_d7
title: Additional file 4: Table S2. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597131_d5
title: Additional file 6: Table S4. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597131_d6
title: Additional file 1: Table S1. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Summary of mapping statistics. Mapping statistics were obtained from TopHat2 and includes the number of mapped and total reads after FastQC and Trimmomatic quality control steps. Birds were assigned to eight different groups according to three levels: status (infected and uninfected), chicken line (L10L and L10H line) and time point (weeks 1 and 3). (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3597131_d4
title: Additional file 7: Table S5. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597131_d3
title: Additional file 14: Table S12. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597119_d2
title: Additional file 3: of Evolution of neuropeptides in non-pterygote hexapods

description: Assignment of precursor sequences listed in Additional file 1 (only sequences not released in NCBI yet). The original sequences from assembly version 1 will be available upon request. (XLS 62 kb)
DOI: 10.6084/m9.figshare.c.3596441_d1
title: Additional file 10: of Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

description: Table S15. List of B. braunii 779 enzymes involved in botryococcene or squalene biosynthesis based on the machine-assembled transcriptome of B. braunii Showa.
DOI: 10.6084/m9.figshare.c.3596402_d8
title: Additional file 8: Table S5. of The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog

description: MiRNAs tested in qPCR validation. Tissue enriched miRNAs and their sequences are displayed. MiRNA abundance was measured through qPCR in order to correlate their tissue enrichment status to deep sequencing results. (XLSX 15Â kb)