cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6800616
title: Colección de notas del diario Ecos Diarios de la ciudad de Necochea, Buenos Aires, Argentina

description: Se trata de un dataset de notas periodísticas del diario necochense Ecos Diarios que cubre desde el mes de junio de 2017 hasta septiembre de 2020. Contiene las siguientes variables: fecha, titulo, bajada, nota y link.
DOI: 10.6084/m9.figshare.20235714
title: Additional file 1 of The effects of polyunsaturated fatty acid (PUFA) administration on the microbiome-gut-brain axis in adolescents with anorexia nervosa (the MiGBAN study): study protocol for a longitudinal, double-blind, randomized, placebo-controlled trial

description: Additional file 1.
DOI: 10.6084/m9.figshare.20235714.v1
title: Additional file 1 of The effects of polyunsaturated fatty acid (PUFA) administration on the microbiome-gut-brain axis in adolescents with anorexia nervosa (the MiGBAN study): study protocol for a longitudinal, double-blind, randomized, placebo-controlled trial

description: Additional file 1.
DOI: 10.6084/m9.figshare.20235748
title: Additional file 10 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 10 Supplementary Table S9. Joint genotyping Minos memory usage and run times. Values were taken from the LSF reports for each Nextflow task (“Max Memory” and “Run time”). The first three stages VCF merge, VCF cluster, and Gramtools build used 10, 20 and 20 CPUs respectively. The run times are quoted here, not total CPU time. 1Minos is run on each sample in parallel. The mean run time per sample and maximum RAM across all samples is shown. 2This process in an intermediate stage used when producing the final merged VCF file. It merges batches of 300 VCF files each into one VCF file. The merged VCF files are then input to the last task VCF final merge. The mean run time for each batch and maximum RAM across all batches is shown.
DOI: 10.6084/m9.figshare.20235748.v1
title: Additional file 10 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 10 Supplementary Table S9. Joint genotyping Minos memory usage and run times. Values were taken from the LSF reports for each Nextflow task (“Max Memory” and “Run time”). The first three stages VCF merge, VCF cluster, and Gramtools build used 10, 20 and 20 CPUs respectively. The run times are quoted here, not total CPU time. 1Minos is run on each sample in parallel. The mean run time per sample and maximum RAM across all samples is shown. 2This process in an intermediate stage used when producing the final merged VCF file. It merges batches of 300 VCF files each into one VCF file. The merged VCF files are then input to the last task VCF final merge. The mean run time for each batch and maximum RAM across all batches is shown.
DOI: 10.6084/m9.figshare.20235751
title: Additional file 11 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 11 Supplementary Table S10. Counts of resistant and susceptible phenotypes for each amino acid variant seen in the RRDR region of the rpoB gene for the CRyPTIC and Mykrobe data sets. Counts are shown for all CRyPTIC samples with a rifampicin phenotype (CRyPTIC all) and only for those with a high quality phenotype (CRyPTIC high qual). Asterisk (*) shows borderline resistant mutations identified by the WHO.
DOI: 10.6084/m9.figshare.20235751.v1
title: Additional file 11 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 11 Supplementary Table S10. Counts of resistant and susceptible phenotypes for each amino acid variant seen in the RRDR region of the rpoB gene for the CRyPTIC and Mykrobe data sets. Counts are shown for all CRyPTIC samples with a rifampicin phenotype (CRyPTIC all) and only for those with a high quality phenotype (CRyPTIC high qual). Asterisk (*) shows borderline resistant mutations identified by the WHO.
DOI: 10.6084/m9.figshare.20235754
title: Additional file 12 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 12 Supplementary Table S11. M. tuberculosis accessions.
DOI: 10.6084/m9.figshare.20235754.v1
title: Additional file 12 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 12 Supplementary Table S11. M. tuberculosis accessions.
DOI: 10.6084/m9.figshare.20235757
title: Additional file 13 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 13 Supplementary Table S12. K. pneumoniae accessions.
DOI: 10.6084/m9.figshare.20235757.v1
title: Additional file 13 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 13 Supplementary Table S12. K. pneumoniae accessions.
DOI: 10.6084/m9.figshare.20235760.v1
title: Additional file 14 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 14 Supplementary Table S13. S. aureus accessions.
DOI: 10.6084/m9.figshare.20235760
title: Additional file 14 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 14 Supplementary Table S13. S. aureus accessions.
DOI: 10.6084/m9.figshare.20235769
title: Additional file 2 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 2 Supplementary Table S1. Raw results generated using calls from Cortex and SAMtools.
DOI: 10.6084/m9.figshare.20235769.v1
title: Additional file 2 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 2 Supplementary Table S1. Raw results generated using calls from Cortex and SAMtools.
DOI: 10.6084/m9.figshare.20235772
title: Additional file 3 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 3 Supplementary Table S2. Raw results generated using calls from Cortex, SAMtools and Snippy.
DOI: 10.6084/m9.figshare.20235772.v1
title: Additional file 3 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 3 Supplementary Table S2. Raw results generated using calls from Cortex, SAMtools and Snippy.
DOI: 10.6084/m9.figshare.20235778
title: Additional file 5 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 5 Supplementary Table S4. Results of calling simulated complex variants in the M. tuberculosis genome. Total length is the length of the ref allele. Columns 2–5 show the number of each type of variant added to make the complex variant. For example, the first set of variants was 3 SNPs in a window of 10bp, and no insertions or deletions. The second set was 3 SNPs, one insertion of 2bp, and one deletion of 2bp in a window of 10bp.
DOI: 10.6084/m9.figshare.20235775
title: Additional file 4 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 4 Supplementary Table S3. Results of calling simulated SNPs, insertions and deletions in the M. tuberculosis genome.
DOI: 10.6084/m9.figshare.20235775.v1
title: Additional file 4 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 4 Supplementary Table S3. Results of calling simulated SNPs, insertions and deletions in the M. tuberculosis genome.
DOI: 10.6084/m9.figshare.20235778.v1
title: Additional file 5 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 5 Supplementary Table S4. Results of calling simulated complex variants in the M. tuberculosis genome. Total length is the length of the ref allele. Columns 2–5 show the number of each type of variant added to make the complex variant. For example, the first set of variants was 3 SNPs in a window of 10bp, and no insertions or deletions. The second set was 3 SNPs, one insertion of 2bp, and one deletion of 2bp in a window of 10bp.
DOI: 10.6084/m9.figshare.20235781
title: Additional file 6 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 6 Supplementary Table S5. Results of all tools evaluated on the empirical bacteria data set. Results are using the default filter of each tool, which means only taking VCF records where the FILTER column was equal to PASS. The “unfiltered” results are from ignoring the FILTER column and using all records.
DOI: 10.6084/m9.figshare.20235781.v1
title: Additional file 6 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 6 Supplementary Table S5. Results of all tools evaluated on the empirical bacteria data set. Results are using the default filter of each tool, which means only taking VCF records where the FILTER column was equal to PASS. The “unfiltered” results are from ignoring the FILTER column and using all records.
DOI: 10.6084/m9.figshare.20235784
title: Additional file 7 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 7 Supplementary Table S6. Summary of effect of including variants from Snippy, in addition to Cortex and SAMtools, as input to BayesTyper, GraphTyper, and Minos. The values are the mean change in precision and recall calculated across all simulated data and all bacteria data.
DOI: 10.6084/m9.figshare.20235784.v1
title: Additional file 7 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 7 Supplementary Table S6. Summary of effect of including variants from Snippy, in addition to Cortex and SAMtools, as input to BayesTyper, GraphTyper, and Minos. The values are the mean change in precision and recall calculated across all simulated data and all bacteria data.
DOI: 10.6084/m9.figshare.20235787
title: Additional file 8 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 8 Supplementary Table S7. Run time and memory summary for each tool on each data set. Values are taken from the output of the Unix command time -v.
DOI: 10.6084/m9.figshare.20235787.v1
title: Additional file 8 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 8 Supplementary Table S7. Run time and memory summary for each tool on each data set. Values are taken from the output of the Unix command time -v.
DOI: 10.6084/m9.figshare.20235790
title: Additional file 9 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 9 Supplementary Table S8. Change in accuracy before and after running the joint genotyping pipeline on the Walker 2013 M. tuberculosis data. Joint genotyped precision is calculated in two ways: using just the non-reference allele calls, and using all calls. Note that this does not apply to the recall because in that case we only look for non-reference calls, and so including reference calls has no effect.
DOI: 10.6084/m9.figshare.20235790.v1
title: Additional file 9 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

description: Additional file 9 Supplementary Table S8. Change in accuracy before and after running the joint genotyping pipeline on the Walker 2013 M. tuberculosis data. Joint genotyped precision is calculated in two ways: using just the non-reference allele calls, and using all calls. Note that this does not apply to the recall because in that case we only look for non-reference calls, and so including reference calls has no effect.
DOI: 10.5281/zenodo.6800637
title: Colección de notas de la Revista Puerto, Mar del Plata, Buenos Aires, Argentina

description: Se trata de la colección completa de notas de la Revista Puerto, versión digital online, desde el año de inicio (2009) hasta el año 2020. Contiene las siguientes variables: fecha, titulo, bajada, nota, imagen, link.
DOI: 10.5281/zenodo.6800636
title: Colección de notas de la Revista Puerto, Mar del Plata, Buenos Aires, Argentina

description: Se trata de la colección completa de notas de la Revista Puerto, versión digital online, desde el año de inicio (2009) hasta el año 2020. Contiene las siguientes variables: fecha, titulo, bajada, nota, imagen, link.
DOI: 10.6084/m9.figshare.20235792
title: NSW greater glider DArTseq data

description: Genome-wide SNPs for NSW greater gliders (Petauroides volans). SNP data was generated by Diversity Arrays Technology, Canberra.
DOI: 10.5281/zenodo.6800650
title: Colección de notas del diario La Nueva de la ciudad de Bahía Blanca, Buenos Aires, Argentina

description: Se trata de un dataset de notas periodísticas del diario bahiense La Nueva que cubre desde el mes de enero de 2016 hasta junio de 2022. Contiene las siguientes variables: fecha, titulo, bajada, nota y link.
DOI: 10.5281/zenodo.6800649
title: Colección de notas del diario La Nueva de la ciudad de Bahía Blanca, Buenos Aires, Argentina

description: Se trata de un dataset de notas periodísticas del diario bahiense La Nueva que cubre desde el mes de enero de 2016 hasta junio de 2022. Contiene las siguientes variables: fecha, titulo, bajada, nota y link.
DOI: 10.5281/zenodo.6800660
title: Colección de notas del diario La Capital de la ciudad de Mar del Plata, Buenos Aires, Argentina

description: Se trata de un dataset de notas periodísticas del diario marplatense La Capital que cubre desde el mes de marzo de 2016 hasta junio de 2022. Contiene las siguientes variables: fecha, titulo, bajada, nota y link.
DOI: 10.5281/zenodo.6800659
title: Colección de notas del diario La Capital de la ciudad de Mar del Plata, Buenos Aires, Argentina

description: Se trata de un dataset de notas periodísticas del diario marplatense La Capital que cubre desde el mes de marzo de 2016 hasta junio de 2022. Contiene las siguientes variables: fecha, titulo, bajada, nota y link.
DOI: 10.6084/m9.figshare.20235795
title: acute toxicity test- conditions.pdf

description: Gives details of methodology adopted
DOI: 10.6084/m9.figshare.20235795.v2
title: acute toxicity test- conditions.pdf

description: Gives details of methodology adopted
DOI: 10.6084/m9.figshare.20235795.v1
title: acute toxicity test- conditions.pdf

description: Gives details of methodology adopted
DOI: 10.6084/m9.figshare.20235879
title: Gray_Greenstudy raw data

description: Raw data from toxicological exposure assays investigating the toxicity of ecofriendly and consumer products before and after degradation to two sensitive aquatic organisms.
DOI: 10.25912/rdf_1657078926128
title: Metacognition vs metaemotion in disordered eating database
DOI: 10.5281/zenodo.6795552
title: Changes of MJO propagation characteristics under global warming

description: The change of Madden–Julian Oscillation (MJO) propagation and periodicity characteristics under global warming is investigated using two selected CMIP5 models. It is found that the MJO period tends to be shorter, while its eastward propagation tends to be accelerated. Meanwhile the main MJO activity center shifts eastward toward the central equatorial Pacific. Two factors are possibly responsible for the increased eastward phase speed of the MJO. The first is attributed to the increase of atmospheric static stability that accelerates equatorial Kelvin wave speed. The second is attributed to the increase of zonal asymmetry of MJO-scale moist static energy (MSE) tendency, which is contributed to the combined effect of anomalous circulation and mean MSE gradient. A theoretical framework is constructed to understand the relative role of anomalous heating and mean static stability changes in determining MJO-scale circulation change. It is found that their effect is phase dependent. During the initial warming phase the circulation change is primarily controlled by the heating change, whereas during the later warming phase it is primarily controlled by the static stability change. The eastward shift of the main MJO activity center is possibly caused by the occurrence of an El Niño-like mean SST change and associated vertical overturning circulation change in the tropical Pacific.
DOI: 10.5281/zenodo.6795551
title: Changes of MJO propagation characteristics under global warming

description: The change of Madden–Julian Oscillation (MJO) propagation and periodicity characteristics under global warming is investigated using two selected CMIP5 models. It is found that the MJO period tends to be shorter, while its eastward propagation tends to be accelerated. Meanwhile the main MJO activity center shifts eastward toward the central equatorial Pacific. Two factors are possibly responsible for the increased eastward phase speed of the MJO. The first is attributed to the increase of atmospheric static stability that accelerates equatorial Kelvin wave speed. The second is attributed to the increase of zonal asymmetry of MJO-scale moist static energy (MSE) tendency, which is contributed to the combined effect of anomalous circulation and mean MSE gradient. A theoretical framework is constructed to understand the relative role of anomalous heating and mean static stability changes in determining MJO-scale circulation change. It is found that their effect is phase dependent. During the initial warming phase the circulation change is primarily controlled by the heating change, whereas during the later warming phase it is primarily controlled by the static stability change. The eastward shift of the main MJO activity center is possibly caused by the occurrence of an El Niño-like mean SST change and associated vertical overturning circulation change in the tropical Pacific.
DOI: 10.5517/ccdc.csd.cc2bg5ff
title: CCDC 2158574: Experimental Crystal Structure Determination

description: Related Article: Masami Sakamoto, Kazutaka Sanada|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bg5gg
title: CCDC 2158575: Experimental Crystal Structure Determination

description: Related Article: Masami Sakamoto, Kazutaka Sanada|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bg5hh
title: CCDC 2158576: Experimental Crystal Structure Determination

description: Related Article: Masami Sakamoto, Kazutaka Sanada|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bg9ch
title: CCDC 2158696: Experimental Crystal Structure Determination

description: Related Article: Masami Sakamoto, Kazutaka Sanada|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bgb6c
title: CCDC 2158722: Experimental Crystal Structure Determination

description: Related Article: Masami Sakamoto, Kazutaka Sanada|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bgb9g
title: CCDC 2158725: Experimental Crystal Structure Determination

description: Related Article: Masami Sakamoto, Kazutaka Sanada|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bgbbh
title: CCDC 2158726: Experimental Crystal Structure Determination

description: Related Article: Masami Sakamoto, Kazutaka Sanada|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bgf08
title: CCDC 2158809: Experimental Crystal Structure Determination

description: Related Article: Kamal Goljahanpoor, Harri Sopo, Reijo Sillanpää|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21lk6f
title: CCDC 1894664: Experimental Crystal Structure Determination

description: Related Article: Qi Shen, Jiashi Xu, Xiaodan Chen|2022|Dalton Trans.|51|10240|doi:10.1039/D2DT01163H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21lk7g
title: CCDC 1894665: Experimental Crystal Structure Determination

description: Related Article: Qi Shen, Jiashi Xu, Xiaodan Chen|2022|Dalton Trans.|51|10240|doi:10.1039/D2DT01163H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21lk8h
title: CCDC 1894666: Experimental Crystal Structure Determination

description: Related Article: Qi Shen, Jiashi Xu, Xiaodan Chen|2022|Dalton Trans.|51|10240|doi:10.1039/D2DT01163H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.