cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10001422
title: Engagement

description: We collected engagement data from 712 posts published on the Spain.info fan page, 93,385 positive reactions and 3,516 positive comments on these posts. We are interested in studying only the positive engagement, then neutral and negative valenced reactions and comments have been dismissed in our research. We used reactions, comments, and shares to calculate indexes of positive engagement,  positive popularity, positive commitment, and positive virality. These variables were categorized into three groups: 25% bottom, middle, 25% top. The Facebook posts collected were publish in 2020.  We then classified each post according to characteristics such as the Spanish destination promoted, the topic of the post, the presence of interaction between the brand and the audience, the language used and the tourist season at the time of publication.  All these variables are categorical, but they were transformed by Optimal Scaling.
DOI: 10.5281/zenodo.10051279
title: Engagement

description: We collected engagement data from 712 posts published on the Spain.info fan page, 93,385 positive reactions and 3,516 positive comments on these posts. We are interested in studying only the positive engagement, then neutral and negative valenced reactions and comments have been dismissed in our research. We used reactions, comments, and shares to calculate indexes of positive engagement,  positive popularity, positive commitment, and positive virality. These variables were categorized into three groups: 25% bottom, middle, 25% top. The Facebook posts collected were publish in 2020.  We then classified each post according to characteristics such as the Spanish destination promoted, the topic of the post, the presence of interaction between the brand and the audience, the language used and the tourist season at the time of publication.  All these variables are categorical, but they were transformed by Optimal Scaling.
DOI: 10.5281/zenodo.10902968
title: Globalization Poverty Inequality in Thailand
DOI: 10.5281/zenodo.10590058
title: Dataset - Dam influence: evaluating vegetation dynamics on an artificial island in a Brazilian savanna

description: Database for NDVI, altitude, aboveground biomass, canopy gaps, and drone flight for evaluating vegetation structure in Pirapitinga Ecological Station (PES) in Minas Gerais, Brazil.
DOI: 10.5281/zenodo.10590339
title: Dataset - Dam influence: evaluating vegetation dynamics on an artificial island in a Brazilian savanna

description: Database for NDVI, altitude, aboveground biomass, canopy gaps, and drone flight for evaluating vegetation structure in Pirapitinga Ecological Station (PES) in Minas Gerais, Brazil.
DOI: 10.5281/zenodo.11482775
title: ProkBERT PhaStyle

description: Data for ProkBERT PhaStyle

Singularity containers and defintion files
DOI: 10.5281/zenodo.13907667
title: Data for Marshall et al, "Microbial metabolism disrupts cytokine activity to impact host immune response"

description: Raw data for publication "Microbial metabolism disrupts cytokine activity to impact host immune response", Marshall EKP et al. The archive is organized into folders containing raw data pertaining to each figure.
DOI: 10.5281/zenodo.14009849
title: Molecular dynamics simulation data for the publication "Trapping of spermine, Kukoamine A, and polyamine toxin blockers in GluK2 kainate receptor channels"

description: This dataset contains unbiased molecular dynamics simulation trajectories, stripped of water and lipid coordinates due to size constraints. It also contains the full initial coordinates for production runs as well as the representative structures for all trajectories.

Description of the data and file structure

The data are deposited as a .zip file and organized into 4 folders, each containing MD simulation data for GluK2SPM, GluK2KukoA, GluK2NpTx8, and GluK2PhTx74 systems.

All trajectory (.nc) files are stripped of water and lipid molecules, and saved sparsely, skipping by 20 frames. Please see the table below for the systems and corresponding topology and trajectory files.






System



# of Frames



Production Length



Topology File



Trajectory File





GluK2SPM



3992



800 ns



GLUK2_SPM_closed_nowat_nolip.prmtop



GLUK2_SPM_closed_traj_nowat_nolip_skip20.nc





GluK2KukoA



2800



560 ns



GLUK2_KUK_closed_nowat_nolip.prmtop



GLUK2_KUK_closed_traj_nowat_nolip_skip20.nc





GluK2PhTx74



2800



560 ns



GLUK2_PTX_closed_nowat_nolip.prmtop



GLUK2_PTX_closed_traj_nowat_nolip_skip20.nc





GluK2NpTx8



2800



560 ns



GLUK2_NTX_closed_nowat_nolip.prmtop



GLUK2_NTX_closed_traj_nowat_nolip_skip20.nc





 

The full (with waters and lipids) initial structures and representative structures of the trajectories and corresponding topology files are located under each system folder. The topology filenames are in the form of *full.prmtop and the coordinate filenames are in the form of *initial.rst7 and *repres.rst7. Representative structures match the structures shown in Figure 6 in the paper.

MD trajectories in binary NetCDF (.nc) format and the coordinates in .rst7 format can be visualized using VMD after uploading the corresponding topology file (.prmtop).Analysis of the trajectories can be performed using the CPPTRAJ module of AmberTools and VMD.
DOI: 10.5281/zenodo.8327242
title: Expert survey data- Low trophic aquaculture products

description: The expert data was collected through two different events. The first event was a tasting event organized in France in October 2022, where the participants consisted primarily of chefs and cooking students who possess practical knowledge of preparing food. During this event, the experts had the opportunity to taste the LTA products, providing valuable insights. The second event took place during the AquaVitae annual meeting in Brazil in April 2023. Although the experts in Brazil did not have the chance to taste the products, they exhibited extensive familiarity with these species due to their years of experience working with them.
DOI: 10.5281/zenodo.8327243
title: Expert survey data- Low trophic aquaculture products

description: The expert data was collected through two different events. The first event was a tasting event organized in France in October 2022, where the participants consisted primarily of chefs and cooking students who possess practical knowledge of preparing food. During this event, the experts had the opportunity to taste the LTA products, providing valuable insights. The second event took place during the AquaVitae annual meeting in Brazil in April 2023. Although the experts in Brazil did not have the chance to taste the products, they exhibited extensive familiarity with these species due to their years of experience working with them.
DOI: 10.5281/zenodo.10893110
title: Gamma spectrometry data of loess and U-Th ages of soil carbonates from Tajikistan

description: These two Excel files contain gamma spectrometry data of loess-paleosols of the Khonako-II sequence (Dataset S1), and measured U-Th isotope compositions and calculated U-series ages of soil carbonates collected in the Kuldara and Khonako-II sites (Dataset S2) on the Khovaling Loess Plateau, Tajikistan.
DOI: 10.5281/zenodo.10891494
title: Supplementary data for Development of Indicators of Social Vulnerability and Fishing Reliance in English Coastal Communities

description: Supplementary data for Development of Indicators of Social Vulnerability and Fishing Reliance in English Coastal Communities by Tom Gibson, Chloe Lucas and Angela Muench. Full details are available via the publication and details of folder and file structures are available in the ReadMe file.
DOI: 10.5281/zenodo.10125829
title: Impact of Image Processing Settings for Radiomic Features in Alzheimer's Disease Using 18F-FDG and 11C-PIB PET Scans

description: Radiomics is an established method for calculating features for computer-aided diagnosis and has been vastly applied to oncological studies. This study aimed to assess the impact of image processing in radiomic features in neuroimaging. Fifteen Alzheimer's disease subjects and 18 healthy individuals underwent [18F]-2-fluoro-2-deoxy-D-glucose (FDG) and 11C-labelled Pittsburgh Compound B (PIB) PET scans. T1-MRI scans were used for cerebellar and grey matter (GM), and white matter (WM) tissue delineation. PET images were registered to MRI (MR space) and transformed to MNI space. All images were normalized to cerebellar uptake (SUVR). All possible combinations of the following settings were considered to extract feature values: (1)tracer: FDG or PIB; (2)space: MR or MNI space; (3)discretization: fixed bin number (BN) of 64, fixed bin sizes (BS) of 0.05 or 0.25; and (4)volume of interest (VOI): GM, WM, or BRAIN (GM+WM). Features that correlated (>0.9) to traditional metrics (average VOI SUVR and volume) in any configuration were removed. Correlation of feature values between configurations, redundancy, and harmonization of feature values were tested. Image processing settings highly affect radiomic feature values and should be carefully taken into consideration during study design and should be properly reported.
 
The enclosed datasets refer to the work developed at the University Medical Center Groningen and consists of extracted feature values used in the publication.
DOI: 10.5281/zenodo.10125830
title: Impact of Image Processing Settings for Radiomic Features in Alzheimer's Disease Using 18F-FDG and 11C-PIB PET Scans

description: Radiomics is an established method for calculating features for computer-aided diagnosis and has been vastly applied to oncological studies. This study aimed to assess the impact of image processing in radiomic features in neuroimaging. Fifteen Alzheimer's disease subjects and 18 healthy individuals underwent [18F]-2-fluoro-2-deoxy-D-glucose (FDG) and 11C-labelled Pittsburgh Compound B (PIB) PET scans. T1-MRI scans were used for cerebellar and grey matter (GM), and white matter (WM) tissue delineation. PET images were registered to MRI (MR space) and transformed to MNI space. All images were normalized to cerebellar uptake (SUVR). All possible combinations of the following settings were considered to extract feature values: (1)tracer: FDG or PIB; (2)space: MR or MNI space; (3)discretization: fixed bin number (BN) of 64, fixed bin sizes (BS) of 0.05 or 0.25; and (4)volume of interest (VOI): GM, WM, or BRAIN (GM+WM). Features that correlated (>0.9) to traditional metrics (average VOI SUVR and volume) in any configuration were removed. Correlation of feature values between configurations, redundancy, and harmonization of feature values were tested. Image processing settings highly affect radiomic feature values and should be carefully taken into consideration during study design and should be properly reported.
 
The enclosed datasets refer to the work developed at the University Medical Center Groningen and consists of extracted feature values used in the publication.
DOI: 10.5281/zenodo.13910708
title: Primary data for N-heterocyclic carbene switchable radical or benzyne meditated arylation of thiols using DMF/KOtBu

description: NMR data files for the manuscript:

N-heterocyclic carbene switchable radical or benzyne mediated arylation of thiols using DMF/KOtBu

 

Consists of FID files for all diaryl sulfides presented in the manuscript. These may be opened using NMR processing software such as Topspin, Spinworks or MestReNova.
DOI: 10.5281/zenodo.13325664
title: Data and code files for "Arrests and convictions but not sentence length deter terrorism in 28 EU-member states"

description: Data and code files for "Arrests and convictions but not sentence length deter terrorism in 28 EU-member states", published in Nature in Human Behavior.
DOI: 10.5281/zenodo.13365448
title: Preliminary data and analysis from ultrafast calcium or voltage imaging recordings at 8-bits resolution using a Kinetix camera

description: This dataset was obtained from brain slices of the mouse. Data are from transversal hippocampal slices from 30-40 postnatal days old C57Bl6 mice (of both genders), stained with the Ca2+ indicator Fluo-4 AM; or from layer-5 pyramidal neurons loaded intracellularly either with the Ca2+ indicator Oregon Green BAPTA-5N or with the voltage sensitive dye JPW1114.  Details are in the Read_me file. This dataset cannot be used for publications without permission of the contact person.
DOI: 10.5281/zenodo.10144050
title: Single-cell and single-nucleus RNA-sequencing from paired normal-adenocarcinoma lung samples provides both common and discordant biological insights

description: The datasets generated by Cellranger for all 24 samples (.h5 format).
DOI: 10.5281/zenodo.12595958
title: Mother Cell Blueprints: Engineering Precision Cancer Therapies
title: Building the Mother cell

description: Certainly! Here's a detailed description for the research paper titled "Mother Cell Blueprints: Engineering Precision Cancer Therapies":

---

This research paper delves into the innovative concept of "Mother Cell Theory" within the realm of cancer therapy, emphasizing a transformative approach that integrates the regenerative capabilities of stem cells with the targeted precision of CAR-T cells. By leveraging advanced genetic engineering and synthetic biology techniques, Mother Cells are engineered to enhance specificity in targeting tumor cells, improve safety by minimizing off-target effects, and adapt dynamically to the evolving landscape of cancer cell populations.

The paper outlines a comprehensive methodology for the design and creation of Mother Cells, starting from the selection and genetic modification of suitable stem and immune cells, to the implementation of synthetic biology circuits that enable responsive and adaptive behaviors in complex tumor environments. It explores various mechanisms of action employed by Mother Cells, including Direct Cell Annihilation (DCA) for inducing cancer cell death and Protein Override Mechanism (POM) for disrupting cancer survival pathways.

A significant focus is placed on the precision delivery systems that ensure therapeutic agents are delivered directly to the tumor site, enhancing efficacy while reducing potential systemic toxicity. The paper also discusses the results from rigorous preclinical studies that demonstrate the effectiveness and safety of Mother Cells, paving the way for future clinical trials.

Through a detailed comparison with existing cancer therapies, the paper highlights the advantages of Mother Cells in terms of increased treatment specificity, reduced side effects, and the potential for overcoming resistance mechanisms in tumors. It addresses current challenges and limitations in the field, proposing future directions for research to refine and enhance the capabilities of Mother Cells in clinical settings.

Overall, "Mother Cell Blueprints: Engineering Precision Cancer Therapies" presents a cutting-edge perspective on cancer treatment, proposing a novel class of therapeutic agents that could potentially revolutionize the approach to oncology and personalized medicine.

---

This description encapsulates the scope, objectives, and scholarly contributions of the research paper, offering readers a clear understanding of its significance in the ongoing evolution of cancer therapy.
DOI: 10.5281/zenodo.13884563
title: Values, beliefs, norms, and circular citizenship behaviours in a student sample

description: Data set of 229 students from an online survey, run between March 7th 2024 and April 2nd 2024.

Gender: 43 men (18.8%), 181 women (79.0%), 3 non-binary persons (1.2%), 2 participants (0.9%) preferred not to indicate their gender.

Age: The age ranged from 17 to 29 years (M = 19.7, SD = 1.83).

Variables: Biospheric, altruistic, hedonic, and egoistic values, problem awareness, ascription of causal responsibility, self-efficacy, outcome efficacy, personal norms, circular citizenship behaviours

Data analysis by creating scales for the variables and running regressions/GLM.
DOI: 10.5281/zenodo.10952018
title: Hyperspectral imaging dataset
DOI: 10.5281/zenodo.13898941
title: Encompassing view of spatial and single-cell RNA-seq renews the role of the microvasculature in human atherosclerosis

description: Here we generate an integrative high-resolution map of human atherosclerotic plaques combining single-cell RNA-seq from multiple studies and spatial transcriptomics data from 12 human specimens, with different stages of atherosclerosis. We show cell-type and atherosclerosis-specific expression changes and spatially constrained alterations in cell-cell communication.
DOI: 10.5281/zenodo.13837920
title: Aligned DNA sequence matrix for phylogenetic analyses in the article "Two new species of Caecilia (Gymnophiona: Caeciliidae) from the Ecuadorian humid Chocó"

description: Aligned DNA sequence matrix for phylogenetic analyses of the article "Two new species of Caecilia (Gymnophiona: Caeciliidae) from the Ecuadorian humid Chocó"

The matrix is in NEXUS format and has 3259 bp and 24 terminals.

Partitions are as follows:

charset 12S_tRNA_Val = 1-582;

charset 16S_tRNA = 583-2289;

 

charset ND1_codonPos1 =  2291-3257\3;

charset ND1_codonPos2 =  2292-3258\3;

charset ND1_codonPos3 =  2290-3259\3;
DOI: 10.15468/dl.xq4dkq
title: Occurrence Download

description: A dataset containing 3056 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Morella cerifera (L.) Small",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 3056 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009077-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2nmrz8
title: Occurrence Download

description: A dataset containing 1686 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Morinda citrifolia L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 1686 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009079-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8uj8w
title: Occurrence Download

description: A dataset containing 1097 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Moringa oleifera Lam.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 1097 records from 166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009080-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqay77
title: Occurrence Download

description: A dataset containing 5554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Morus alba L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 5554 records from 370 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009081-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ex5qdv
title: Occurrence Download

description: A dataset containing 525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Morus nigra L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 525 records from 179 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009083-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftsghv
title: Occurrence Download

description: A dataset containing 69963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Cyanocitta cristata (Linnaeus, 1758)"
 ]
}

 The dataset includes 69963 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009082-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m9qmtz
title: Occurrence Download

description: A dataset containing 1654 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Morus rubra L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 1654 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009085-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6cz6zh
title: Occurrence Download

description: A dataset containing 859 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Mexico, Guatemala, Belize, El Salvador, Honduras, Nicaragua, Costa Rica, Panama)",
 "OccurrenceStatus is Present",
 "TaxonKey is Enterosora Baker"
 ]
}

 The dataset includes 859 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009086-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7tuz9
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Murraya koenigii (L.) Spreng.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 219 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009087-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exxgmk
title: Occurrence Download

description: A dataset containing 9367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Python bivittatus Kuhl, 1820",
 "Country is United States of America",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 9367 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009088-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26425105.v1
title: Archived files containing Designs and AF2/ESMFold predictions of proteins used in the manuscript

description: In this zip file all the PDB files comprising AF2/ESMFold predictions can be found.
DOI: 10.6084/m9.figshare.26788351.v1
title: Medium chain fatty acids are potent binding competitors to improve protein-bound uremic toxin clearance in hemodialysis

description: Raw data for the publication "Medium chain fatty acids are potent binding competitors to improve protein-bound uremic toxin clearance in hemodialysis" submited to Kidney international.
DOI: 10.6084/m9.figshare.26425105
title: Archived files containing Designs and AF2/ESMFold predictions of proteins used in the manuscript

description: In this zip file all the PDB files comprising AF2/ESMFold predictions can be found.