cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5835216.v1
title: FACE_UNCOM_201209-201602.zip

description: This package contains the base datasets used in the paper–entitled “Elevated CO2 concentrations reduce C4 cover and decrease diversity of understorey plant community in a Eucalyptus woodland”– in press at Journal of Ecology (accepted on 26th January 2018). The effects of elevated CO2 concentrations on understorey vegetation was studies at the Eucalyptus Free-Air CO2 Enrichment (EucFACE) experiment. Understorey species cover was determined in four, randomly located permanent 2 x 2 m plots in each of the six rings. Presence/absence of all species was surveyed in each of one hundred 20 x 20 cm cells per plot. The first survey was conducted in September 2012, and all but graminoid species were identified. Graminoid species identifications were confirmed in December 2012, when most were in flower. Subsequent surveys were conducted in the same plots in summer (January 2014, January 2015 and February 2016) and identified all understorey species at these times. In addition to raw data of forb and graminoid cover, ring means of environmental variables for each survey year (soil moisture, understorey temperature and photosynthetic radiation, and soil availability of nitrate, ammonium and phosphate) are included. <br>
DOI: 10.6084/m9.figshare.5835207.v2
title: Datacenter Traffic Control: Understanding Techniques and Trade-offs

description: Datacenters provide cost-effective and flexible access to scalable compute and storage resources necessary for today’s cloud computing needs. A typical datacenter is made up of thousands of servers connected with a large network and usually managed by one operator. To provide quality access to the variety of applications and services hosted on datacenters and maximize performance, it deems necessary to use datacenter networks effectively and efficiently. Datacenter traffic is often a mix of several classes with different priorities and requirements. This includes user-generated interactive traffic, traffic with deadlines, and long-running traffic. To this end, custom transport protocols and traffic management techniques have been developed to improve datacenter network performance. In this tutorial paper, we review the general architecture of datacenter networks, various topologies proposed for them, their traffic properties, general traffic control challenges in datacenters and general traffic control objectives. The purpose of this paper is to bring out the important characteristics of traffic control in datacenters and not to survey all existing solutions (as it is virtually impossible due to massive body of existing research). We hope to provide readers with a wide range of options and factors while considering a variety of traffic control mechanisms. We discuss various characteristics of datacenter traffic control including management schemes, transmission control, traffic shaping, prioritization, load balancing, multipathing, and traffic scheduling. Next, we point to several open challenges as well as new and interesting networking paradigms. At the end of this paper, we briefly review inter-datacenter networks that connect geographically dispersed datacenters which have been receiving increasing attention recently and pose interesting and novel research problems. To measure the performance of datacenter networks, different performance metrics have been used such as flow completion times, deadline miss rate, throughput and fairness. Depending on the application and user requirements, some metrics may need more attention. While investigating different traffic control techniques, we point out the trade-offs involved in terms of costs, complexity and performance. We find that a combination of different traffic control techniques may be necessary at particular entities and layers in the network to improve the variety of performance metrics. We also find that despite significant research efforts, there are still open problems that demand further attention from the research community.
DOI: 10.6084/m9.figshare.5835162
title: Additional file 9: Table S9. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Comparisons of metagenomic functional gene categories. Gene counts for MG-RAST SEED subsystem categories for all samples in this study. (XLSX 595Â kb)
DOI: 10.6084/m9.figshare.5835162.v1
title: Additional file 9: Table S9. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Comparisons of metagenomic functional gene categories. Gene counts for MG-RAST SEED subsystem categories for all samples in this study. (XLSX 595Â kb)
DOI: 10.6084/m9.figshare.5835159
title: Additional file 8: Table S8. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample ROW2. MG-RAST gene predictions for sample ROW2, based on the Swissprot database. MG-RAST ID 4702455.3. (XLSX 564Â kb)
DOI: 10.6084/m9.figshare.5835159.v1
title: Additional file 8: Table S8. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample ROW2. MG-RAST gene predictions for sample ROW2, based on the Swissprot database. MG-RAST ID 4702455.3. (XLSX 564Â kb)
DOI: 10.6084/m9.figshare.5835156
title: Additional file 7: Table S7. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample ROW1â 2. MG-RAST gene predictions for sample ROW1-2, based on the Swissprot database. MG-RAST ID 4702458.3. (XLSX 277Â kb)
DOI: 10.6084/m9.figshare.5835156.v1
title: Additional file 7: Table S7. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample ROW1â 2. MG-RAST gene predictions for sample ROW1-2, based on the Swissprot database. MG-RAST ID 4702458.3. (XLSX 277Â kb)
DOI: 10.6084/m9.figshare.5835153
title: Additional file 6: Table S6. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample ROW1. MG-RAST gene predictions for sample ROW1, based on the Swissprot database. MG-RAST ID 4702451.3. (XLSX 515Â kb)
DOI: 10.6084/m9.figshare.5835150
title: Additional file 5: Table S5. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample AT8. MG-RAST gene predictions for sample AT8, based on the Swissprot database. MG-RAST ID 4702453.3. (XLSX 355Â kb)
DOI: 10.6084/m9.figshare.5835153.v1
title: Additional file 6: Table S6. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample ROW1. MG-RAST gene predictions for sample ROW1, based on the Swissprot database. MG-RAST ID 4702451.3. (XLSX 515Â kb)
DOI: 10.6084/m9.figshare.5835150.v1
title: Additional file 5: Table S5. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample AT8. MG-RAST gene predictions for sample AT8, based on the Swissprot database. MG-RAST ID 4702453.3. (XLSX 355Â kb)
DOI: 10.6084/m9.figshare.5835147
title: Additional file 4: Table S4. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample AT5. MG-RAST gene predictions for sample AT5, based on the Swissprot database. MG-RAST ID 4702457.3. (XLSX 240Â kb)
DOI: 10.6084/m9.figshare.5835147.v1
title: Additional file 4: Table S4. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample AT5. MG-RAST gene predictions for sample AT5, based on the Swissprot database. MG-RAST ID 4702457.3. (XLSX 240Â kb)
DOI: 10.6084/m9.figshare.5835144
title: Additional file 3: Table S3. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample AT4. MG-RAST gene predictions for sample AT4, based on the Swissprot database. MG-RAST ID 4702454.3. (XLSX 471Â kb)
DOI: 10.6084/m9.figshare.5835144.v1
title: Additional file 3: Table S3. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample AT4. MG-RAST gene predictions for sample AT4, based on the Swissprot database. MG-RAST ID 4702454.3. (XLSX 471Â kb)
DOI: 10.6084/m9.figshare.5835141
title: Additional file 39: Table S36. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: List of all identified unique genetic features based on the Swissprot database in each sample, divided into data derived from Metagenome, Metatranscriptome and Metaproteome. (XLSX 868Â kb)
DOI: 10.6084/m9.figshare.5835141.v1
title: Additional file 39: Table S36. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: List of all identified unique genetic features based on the Swissprot database in each sample, divided into data derived from Metagenome, Metatranscriptome and Metaproteome. (XLSX 868Â kb)
DOI: 10.6084/m9.figshare.5835132
title: Additional file 37: Table S35. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Comparative proteome results of genes of interest. List of all annotated proteins of interest using our narrowed-down database (AdditionalÂ fileÂ 13). (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.5835132.v1
title: Additional file 37: Table S35. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Comparative proteome results of genes of interest. List of all annotated proteins of interest using our narrowed-down database (AdditionalÂ fileÂ 13). (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.5835123
title: Additional file 36: Table S34. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metaproteome analysis of all samples on protein level using the narrowed-down database. Peptide level read output from Proteome Discoverer software (Thermo Fisher Scientific) version 2.1 for each protein, with a confidence FDR
DOI: 10.6084/m9.figshare.5835123.v1
title: Additional file 36: Table S34. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metaproteome analysis of all samples on protein level using the narrowed-down database. Peptide level read output from Proteome Discoverer software (Thermo Fisher Scientific) version 2.1 for each protein, with a confidence FDR
DOI: 10.6084/m9.figshare.5835117
title: Additional file 35: Table S33. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Differentially expressed genes in AOD symptomatic tissue. List of significant genes resulting from comparative analysis of the non-symptomatic samples and symptomatic samples using the voom function of the R-package limma, based on an FDR value 2. These results were generated on read hits against our narrowed-down database (Additional file 13). (XLSX 860 kb)
DOI: 10.6084/m9.figshare.5835117.v1
title: Additional file 35: Table S33. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Differentially expressed genes in AOD symptomatic tissue. List of significant genes resulting from comparative analysis of the non-symptomatic samples and symptomatic samples using the voom function of the R-package limma, based on an FDR value 2. These results were generated on read hits against our narrowed-down database (Additional file 13). (XLSX 860 kb)
DOI: 10.6084/m9.figshare.5835099
title: Additional file 33: Table S32. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample ROW1–2. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT2. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.5835099.v1
title: Additional file 33: Table S32. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample ROW1–2. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT2. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.5835090
title: Additional file 1: of Cigarette smoking and smoking-attributable diseases among Estonian physicians: a cross-sectional study

description: Weighted counts. Weighted counts of study participants by sex, age, smoking status, smoking duration, presence of ischaemic heart disease, lung emphysema and chronic bronchitis. (XLSX 129 kb)
DOI: 10.6084/m9.figshare.5835090.v1
title: Additional file 1: of Cigarette smoking and smoking-attributable diseases among Estonian physicians: a cross-sectional study

description: Weighted counts. Weighted counts of study participants by sex, age, smoking status, smoking duration, presence of ischaemic heart disease, lung emphysema and chronic bronchitis. (XLSX 129 kb)
DOI: 10.6084/m9.figshare.5835087
title: Additional file 1: of Coping strategies, vision-related quality of life, and emotional health in managing retinitis pigmentosa: a survey study

description: Anonymised Survey Data. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.5835087.v1
title: Additional file 1: of Coping strategies, vision-related quality of life, and emotional health in managing retinitis pigmentosa: a survey study

description: Anonymised Survey Data. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.5835078
title: Additional file 32: Table S31. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample ROW1. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT2. (XLSX 11317 kb)
DOI: 10.6084/m9.figshare.5835078.v1
title: Additional file 32: Table S31. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample ROW1. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT2. (XLSX 11317 kb)
DOI: 10.6084/m9.figshare.5835075
title: Additional file 2: Table S2. of Identification of novel candidate genes for 46,XY disorders of sex development (DSD) using a C57BL/6J-Y POS mouse model

description: Genes differentially expressed between B6-Y B6 and B6-Y POS males. All 515 differentially expressed genes (column 1) either underexpressed or overexpressed (column 3) in B6-Y POS males with corresponding fold change difference (column 2) are shown. The table also contains the DSD-specific gene list used to filter exome variants (column 4) as well as which genes are common between two lists (column 5). (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.5835075.v1
title: Additional file 2: Table S2. of Identification of novel candidate genes for 46,XY disorders of sex development (DSD) using a C57BL/6J-Y POS mouse model

description: Genes differentially expressed between B6-Y B6 and B6-Y POS males. All 515 differentially expressed genes (column 1) either underexpressed or overexpressed (column 3) in B6-Y POS males with corresponding fold change difference (column 2) are shown. The table also contains the DSD-specific gene list used to filter exome variants (column 4) as well as which genes are common between two lists (column 5). (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.5835063
title: Additional file 31: Table S30. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample AT8. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT8. (XLSX 16212 kb)
DOI: 10.6084/m9.figshare.5835063.v1
title: Additional file 31: Table S30. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample AT8. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT8. (XLSX 16212 kb)
DOI: 10.6084/m9.figshare.5835051
title: Additional file 30: Table S29. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample AT5. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT2. (XLSX 7176 kb)
DOI: 10.6084/m9.figshare.5835051.v1
title: Additional file 30: Table S29. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample AT5. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT2. (XLSX 7176 kb)
DOI: 10.6084/m9.figshare.5835036
title: Additional file 2: Table S2. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample AT3. MG-RAST gene predictions for sample AT3, based on the Swissprot database. MG-RAST ID 4702456.3. (XLSX 470Â kb)
DOI: 10.6084/m9.figshare.5835036.v1
title: Additional file 2: Table S2. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Metagenomic gene annotation of sample AT3. MG-RAST gene predictions for sample AT3, based on the Swissprot database. MG-RAST ID 4702456.3. (XLSX 470Â kb)
DOI: 10.6084/m9.figshare.5835033
title: Additional file 9: of Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

description: GO annotation of genes that were differentially expressed between Texel and F1 ewes on a flushing diet. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5835033.v1
title: Additional file 9: of Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

description: GO annotation of genes that were differentially expressed between Texel and F1 ewes on a flushing diet. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5835024
title: Additional file 29: Table S28. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample AT4. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT2. (XLSX 2628 kb)
DOI: 10.6084/m9.figshare.5835024.v1
title: Additional file 29: Table S28. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample AT4. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT2. (XLSX 2628 kb)
DOI: 10.6084/m9.figshare.5835015
title: Additional file 8: of Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

description: KEGG pathways associated with genes that were differentially expressed between Finnsheep and Texel on a flushing diet. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5835015.v1
title: Additional file 8: of Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

description: KEGG pathways associated with genes that were differentially expressed between Finnsheep and Texel on a flushing diet. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5835012
title: Additional file 28: Table S27. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample AT3. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT2. (XLSX 9021 kb)
DOI: 10.6084/m9.figshare.5835012.v1
title: Additional file 28: Table S27. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample AT3. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT2. (XLSX 9021 kb)
DOI: 10.6084/m9.figshare.5835006
title: Additional file 5: Table S5. of An integrative functional genomics framework for effective identification of novel regulatory variants in genomeâ phenome studies

description: List of SNPs in different types of functional categories. (XLSX 546 kb)
DOI: 10.6084/m9.figshare.5835006.v1
title: Additional file 5: Table S5. of An integrative functional genomics framework for effective identification of novel regulatory variants in genomeâ phenome studies

description: List of SNPs in different types of functional categories. (XLSX 546 kb)
DOI: 10.6084/m9.figshare.5835000
title: Additional file 27: Table S26. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample AT2. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT2. (XLSX 7618 kb)
DOI: 10.6084/m9.figshare.5835000.v1
title: Additional file 27: Table S26. of Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

description: Narrowed-down metatranscriptome read hits of sample AT2. Gene-read hits assigned using the database depicted in ‘Additional file 13’ and the Trinotate pipeline for sample AT2. (XLSX 7618 kb)
DOI: 10.6084/m9.figshare.5834997
title: Additional file 7: of Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

description: GO annotation for genes that were differentially expressed between Finnsheep and Texel on a flushing diet. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5834997.v1
title: Additional file 7: of Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

description: GO annotation for genes that were differentially expressed between Finnsheep and Texel on a flushing diet. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5834994
title: Additional file 4: Table S4. of An integrative functional genomics framework for effective identification of novel regulatory variants in genomeâ phenome studies

description: List of GWAS SNPs located at phosphorylation sites. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5834994.v1
title: Additional file 4: Table S4. of An integrative functional genomics framework for effective identification of novel regulatory variants in genomeâ phenome studies

description: List of GWAS SNPs located at phosphorylation sites. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.5834985
title: Additional file 3: Table S3. of An integrative functional genomics framework for effective identification of novel regulatory variants in genomeâ phenome studies

description: List of GWAS SNPs located at ligand binding sites. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5834985.v1
title: Additional file 3: Table S3. of An integrative functional genomics framework for effective identification of novel regulatory variants in genomeâ phenome studies

description: List of GWAS SNPs located at ligand binding sites. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5834982
title: Additional file 6: of Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

description: Differential expression between control-diet sub-groups. List of genes that were differentially expressed between a subset of Finnsheep and Texel; Texel and F1 crosses; and Finnsheep and F1 crosses maintained on a control diet. (XLSX 19 kb)