cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1381870.v1
title: Fatiando a Terra: construindo uma base para ensino e pesquisa de geofísica

description: <strong>About </strong> This is a presentation I gave for the Department of Geophysics of the University of São Paulo. It's about my open-source project Fatiando a Terra (http://www.fatiando.org) and how I'm using for teaching geophysics and doing my own research on inverse problems. 'slides.pdf' is the presentation (made in Google Docs). The live demos were performed with some of the IPython notebooks in the 'notebooks' folder. You can view a static version of the notebooks on nbviewer (link below). The zip file 'iag-04-2015.zip' is an achive of the git repository: https://github.com/leouieda/iag-04-2015 <strong>Resumo </strong> O Fatiando a Terra (www.fatiando.org) é uma biblioteca feita na linguagem Python que tem como objetivo facilitar o trabalho de pesquisadores e professores na área geofísica. Os módulos da biblioteca foram planejados para facilitar a combinação de seus componentes de diversas formas. Por exemplo, o mesmo módulo de modelagem direta pode ser usado para produzir dados sintéticos, desenvolver um método de inversão ou como parte de uma interface gráfica interativa. Além disso, as funções da biblioteca podem ser combinadas com funções desenvolvidas pelo usuário e com as muitas bibliotecas científicas da linguagem Python. O módulo de problemas inversos automatiza grande parte da implementação de um novo método de inversão. O pesquisador implementa somente o cálculo de dados preditos e da matriz de sensibilidade, ambos reutilizando os diversos módulos de modelagem direta. Com essas duas funções, o usuário pode escolher livremente entre diversos métodos de optimização e regularização para executar sua inversão. Para o ensino de geofísica, a biblioteca pode ser combinada com a interatividade de outros programas, particularmente o IPython notebook (www.ipython.org). Conceitos difíceis de serem transmitidos em aula podem ser explorados pelos alunos de forma interativa, com botões, gráficos e animações. Por exemplo, para ensinar a reflexão e refração de ondas sísmicas, o professor pode utilizar simulações numéricas da propagação de ondas para produzir animações em tempo real. Outro exemplo é permitir aos alunos explorar como o campo geomagnético interage com um corpo geológico a diferentes latitudes para produzir uma anomalia magnética de campo total. Dessa forma, os alunos ganham experiência e intuição ao interagir com os resultados. A implementação de diversos métodos geofísicos em uma única biblioteca fornece a base necessária para a rápida criação de novas metodologias e material didático interativo. A maior parte da funcionalidade atual é para gravimetria e magnetometria, embora já exista um núcleo de sísmica e sismologia que está sendo desenvolvido. O projeto necessita de usuários e desenvolvedores para crescer e abranger os demais ramos da geofísica. O projeto é software livre e contribuições de qualquer forma são bem vindas.
DOI: 10.6084/m9.figshare.1381854
title: LocationInteractions_EID2

description: <pre>Location interactions indicate the possibility of a species being found in a location.</pre> Locations were interpreted at two levels: country and region. Regions correspond to first administrative divisions (e.g., states (USA), departments (France,) home nations of the United Kingdom, etc.) Evidence for these interactions was extracted from NCBI sequences database and NCBI PubMed database. This dataset comprises the following fields: 1 Species: name of species.<br>2 Species classification: the taxonomic classification of the Species.<br>3 Country: official name of the country<br>4 Region: where available the official name of the region (sub-country) part of the location is listed under this header. 5 Sequences count: Total number of nucleotide sequences supporting the interaction. 6 Publication count: Total number of PubMed publications supporting the interaction. 7 Sequences: semi colon separated list of the nucleotide sequence identifiers (GIs) that can be used to retrieve these sequences from the NCBI Nucleotide database. For readability purposes this list was restricted to a maximum of 100 identifiers. 8 Publications: semi colon separated list of the PubMed citation identifiers (PMIDs) that can be used to retrieve these publications from the NCBI PubMed database. For readability purposes this list was restricted to a maximum of 100 identifiers.
DOI: 10.6084/m9.figshare.1381853
title: SpeciesInteractions_EID2

description: Species interactions contained in this dataset indicate the possibility of one species (Cargo) having an interaction with another species (Carrier). This dataset comprises the following fields: 1 Cargo: name of cargo species. 2 Cargo classification: the taxonomic classification of the cargo (e.g. bacteria, virus, etc.) 3 Carrier: name of carrier species. 4 Carrier classification: the taxonomic classification of the carrier (e.g. human, domestic, primates, mammals, etc.) 5 Sequences count: Total number of nucleotide sequences supporting the interaction. 6 Publication count: Total number of PubMed publications supporting the interaction. 7 Sequences: semi colon separated list of the nucleotide sequence identifiers (GIs) that can be used to retrieve these sequences from the NCBI Nucleotide database. For readability purposes this list was restricted to a maximum of 100 identifiers. 8 Publications: semi colon separated list of the PubMed citation identifiers (PMIDs) that can be used to retrieve these publications from the NCBI PubMed database. For readability purposes this list was restricted to a maximum of 100 identifiers.
DOI: 10.6084/m9.figshare.1381842
title: Gaussian Job Archive for C6H6Br6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1381842.v1
title: Gaussian Job Archive for C6H6Br6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1381853.v2
title: SpeciesInteractions_EID2

description: Species interactions contained in this dataset indicate the possibility of one species (Cargo) having an interaction with another species (Carrier). This dataset comprises the following fields: 1 Cargo: name of cargo species. 2 Cargo classification: the taxonomic classification of the cargo (e.g. bacteria, virus, etc.) 3 Carrier: name of carrier species. 4 Carrier classification: the taxonomic classification of the carrier (e.g. human, domestic, primates, mammals, etc.) 5 Sequences count: Total number of nucleotide sequences supporting the interaction. 6 Publication count: Total number of PubMed publications supporting the interaction. 7 Sequences: semi colon separated list of the nucleotide sequence identifiers (GIs) that can be used to retrieve these sequences from the NCBI Nucleotide database. For readability purposes this list was restricted to a maximum of 100 identifiers. 8 Publications: semi colon separated list of the PubMed citation identifiers (PMIDs) that can be used to retrieve these publications from the NCBI PubMed database. For readability purposes this list was restricted to a maximum of 100 identifiers.
DOI: 10.6084/m9.figshare.1381837
title: Circadian rhythm and chronic sleep deprivation effects on human performance - eye-tracking experiment.

description: Circadian rhythms and restricted sleep length affect cognitive functions and, consequently, the performance of day to day activities. To date, no more than a few studies have explored the consequences of these factors on oculomotor behaviour. In this study, eye tracking data have been recorded from 24 participants performing a modified spatial cueing task under two paired conditions. The first condition concerned the time of day variations, as the task was conducted at 10am, 2pm, 6pm, and 10pm. The second condition was the sleep restriction - the subjects participated in the study twice: after one week of unrestricted sleep and after one week of chronic partial sleep deprivation. The task comprised congruent trials with target stimuli preceded with congruent directional cues (60%), incongruent trials with target stimuli preceded with incongruent directional cues (15%), and stimuli without cues (25%). Targets and cues were presented in six possible locations. Participants were instructed to direct their attention and gaze from fixation point to targets only if they were preceded by a cue. The aim of this study was to verify if chronic sleep deficit and circadian rhythm affect the number of errors in performance of saccadic task and whether this impact vary according to the type of error The eye-tracking data are in txt format (archived to 'rar'). Overall size of the data files is about 15 GB. Data are log files form Smart Eye Pro eye tracking system. Detailed information about all recorded parameters are included in User Manual for the Smart Eye Pro system, please see manual available in this project record.
DOI: 10.6084/m9.figshare.1381853.v3
title: SpeciesInteractions_EID2

description: Species interactions contained in this dataset indicate the possibility of one species (Cargo) having an interaction with another species (Carrier). This dataset comprises the following fields: 1 Cargo: name of cargo species. 2 Cargo classification: the taxonomic classification of the cargo (e.g. bacteria, virus, etc.) 3 Carrier: name of carrier species. 4 Carrier classification: the taxonomic classification of the carrier (e.g. human, domestic, primates, mammals, etc.) 5 Sequences count: Total number of nucleotide sequences supporting the interaction. 6 Publication count: Total number of PubMed publications supporting the interaction. 7 Sequences: semi colon separated list of the nucleotide sequence identifiers (GIs) that can be used to retrieve these sequences from the NCBI Nucleotide database. For readability purposes this list was restricted to a maximum of 100 identifiers. 8 Publications: semi colon separated list of the PubMed citation identifiers (PMIDs) that can be used to retrieve these publications from the NCBI PubMed database. For readability purposes this list was restricted to a maximum of 100 identifiers.
DOI: 10.6084/m9.figshare.1381853.v4
title: SpeciesInteractions_EID2

description: Species interactions contained in this dataset indicate the possibility of one species (Cargo) having an interaction with another species (Carrier). This dataset comprises the following fields: 1 Cargo: name of cargo species. 2 Cargo classification: the taxonomic classification of the cargo (e.g. bacteria, virus, etc.) 3 Carrier: name of carrier species. 4 Carrier classification: the taxonomic classification of the carrier (e.g. human, domestic, primates, mammals, etc.) 5 Sequences count: Total number of nucleotide sequences supporting the interaction. 6 Publication count: Total number of PubMed publications supporting the interaction. 7 Sequences: semi colon separated list of the nucleotide sequence identifiers (GIs) that can be used to retrieve these sequences from the NCBI Nucleotide database. For readability purposes this list was restricted to a maximum of 100 identifiers. 8 Publications: semi colon separated list of the PubMed citation identifiers (PMIDs) that can be used to retrieve these publications from the NCBI PubMed database. For readability purposes this list was restricted to a maximum of 100 identifiers.
DOI: 10.6084/m9.figshare.1381820
title: Computer Science for Key stage one

description: this data is from a project that showed:(abstract of paper). In this paper we explore three different ways of introducing Computer Science concepts to pupils aged 5-7. The project used Computer Science unplugged, Tangible computing and Scratch with three separate schools and we examine the effectiveness of each techniques and the corresponding engagement level of the pupils in the session. This project worked in anticipation of the introduction of Computer Science concepts into the UK national curriculum. As well as assessing the effectiveness of the three methods used, we also examine the effects of the order in which they are introduced, using a different order at each school. As a result of this study we observe that the methods used by teachers to deliver this curriculum may greatly impact the learning outcomes, and that particular care needs to be taken to ensure that pupils focus on learning concepts rather than learning tools
DOI: 10.6084/m9.figshare.1381818
title: Gaussian Job Archive for C25H34ClN3O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1381817
title: Gaussian Job Archive for C25H34ClN3O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.12235454
title: In-tube condensation data of R454C in a horizontal 4.7 mm ID tube

description: The attached data was collected at Oregon State University in the Thermal Energy Systems and Transport (TEST) Laboratory during flow condensation experiments for refrigerants R454C. The experiments were conducted in a horizontal circular copper tube of 4.7 mm internal diameter. Water, flowing in the annulus, was used as the coolant. The local condensation heat transfer coefficients and the associated qualities for each refrigerant are reported at varying mass fluxes (100 to 500 kg m^(-2) s^(-1)) and saturation temperatures of 40, 50 and 60 degrees Celsius.<br>The test section was divided into 7 segments. Exact length of each section is recorded below and attached figure shows visual representation of a segment. Water inlet and outlet temperature and the copper tube surface temperature are measured in each segment. The surface temperatures were measured at the center of each section using self-adhesive surface thermocouples. Using these measurements, local heat transfer coefficients and thermodynamic qualities were evaluated for each segment. This was accomplished by performing energy balances on the coolant side to determine the heat duties transferred in each section.<br>Summaries of the average measured values and the calculated variables are presented in the remaining sheets of this document. For more details regarding the experiments, results, and conclusions, please see cited references.
DOI: 10.6084/m9.figshare.1381817.v1
title: Gaussian Job Archive for C25H34ClN3O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1381818.v1
title: Gaussian Job Archive for C25H34ClN3O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1381816
title: Gaussian Job Archive for C25H34ClN3O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1381816.v1
title: Gaussian Job Archive for C25H34ClN3O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1381820.v1
title: Computer Science for Key stage one

description: this data is from a project that showed:(abstract of paper). In this paper we explore three different ways of introducing Computer Science concepts to pupils aged 5-7. The project used Computer Science unplugged, Tangible computing and Scratch with three separate schools and we examine the effectiveness of each techniques and the corresponding engagement level of the pupils in the session. This project worked in anticipation of the introduction of Computer Science concepts into the UK national curriculum. As well as assessing the effectiveness of the three methods used, we also examine the effects of the order in which they are introduced, using a different order at each school. As a result of this study we observe that the methods used by teachers to deliver this curriculum may greatly impact the learning outcomes, and that particular care needs to be taken to ensure that pupils focus on learning concepts rather than learning tools
DOI: 10.6084/m9.figshare.1381783
title: Data from: Santangeli et al. 2015 The surrogacy potential of white-tailed sea eagle nesting habitat on islands of the Baltic Sea

description: The excel file includes information on the fungi species recorded on islands used as part of a study made by Santangeli et al. (2015) in the Baltic Sea of SW Finland. DOI of the original article: 10.1016/j.ecolind.2015.04.042
DOI: 10.6084/m9.figshare.1381781
title: Gaussian Job Archive for C25H34ClN3O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1381783.v1
title: Data from: Santangeli et al. 2015 The surrogacy potential of white-tailed sea eagle nesting habitat on islands of the Baltic Sea

description: The excel file includes information on the fungi species recorded on islands used as part of a study made by Santangeli et al. (2015) in the Baltic Sea of SW Finland. DOI of the original article: 10.1016/j.ecolind.2015.04.042
DOI: 10.6084/m9.figshare.1381755
title: A quarter of a century of the DBQ: some supplementary notes on its validity with regard to accidents

description: This article synthesises the latest information on the relationship between the Driver Behaviour Questionnaire (DBQ) and accidents. We show by means of computer simulation that correlations with accidents are necessarily small because accidents are rare events. An updated meta-analysis on the zero-order correlations between the DBQ and self-reported accidents yielded an overall <i>r</i> of .13 (fixed-effect and random-effects models) for violations (57,480 participants; 67 samples) and .09 (fixed-effect and random-effects models) for errors (66,028 participants; 56 samples). An analysis of a previously published DBQ dataset (975 participants) showed that by aggregating across four measurement occasions, the correlation coefficient with self-reported accidents increased from .14 to .24 for violations and from .11 to .19 for errors. Our meta-analysis also showed that DBQ violations (<i>r</i> = .24; 6353 participants; 20 samples) but not DBQ errors (<i>r</i> = − .08; 1086 participants; 16 samples) correlated with recorded vehicle speed.
DOI: 10.6084/m9.figshare.1381780
title: Gaussian Job Archive for C25H34ClN3O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1381781.v1
title: Gaussian Job Archive for C25H34ClN3O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1381780.v1
title: Gaussian Job Archive for C25H34ClN3O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1381755.v1
title: A quarter of a century of the DBQ: some supplementary notes on its validity with regard to accidents

description: This article synthesises the latest information on the relationship between the Driver Behaviour Questionnaire (DBQ) and accidents. We show by means of computer simulation that correlations with accidents are necessarily small because accidents are rare events. An updated meta-analysis on the zero-order correlations between the DBQ and self-reported accidents yielded an overall <i>r</i> of .13 (fixed-effect and random-effects models) for violations (57,480 participants; 67 samples) and .09 (fixed-effect and random-effects models) for errors (66,028 participants; 56 samples). An analysis of a previously published DBQ dataset (975 participants) showed that by aggregating across four measurement occasions, the correlation coefficient with self-reported accidents increased from .14 to .24 for violations and from .11 to .19 for errors. Our meta-analysis also showed that DBQ violations (<i>r</i> = .24; 6353 participants; 20 samples) but not DBQ errors (<i>r</i> = − .08; 1086 participants; 16 samples) correlated with recorded vehicle speed.
DOI: 10.6084/m9.figshare.1380318
title: Kiris 2015

description: Data for Figures
DOI: 10.6084/m9.figshare.1380318.v1
title: Kiris 2015

description: Data for Figures
DOI: 10.6084/m9.figshare.1380122
title: Interfacial pH during mussel adhesive plaque formation

description: Mussel (<i>Mytilus californianus</i>) adhesion to marine surfaces involves an intricate and adaptive synergy of molecules and spatio-temporal processes. Although the molecules, such as mussel foot proteins (mfps), are well characterized, deposition details remain vague and speculative. Developing methods for the precise surveillance of conditions that apply during mfp deposition would aid both in understanding mussel adhesion and translating this adhesion into useful technologies. To probe the interfacial pH at which mussels buffer the local environment during mfp deposition, a lipid bilayer with tethered pH-sensitive fluorochromes was assembled on mica. The interfacial pH during foot contact with modified mica ranged from 2.2 to 3.3, which is well below the seawater pH of ~ 8. The acidic pH serves multiple functions: it limits mfp-Dopa oxidation, thereby enabling the catecholic functionalities to adsorb to surface oxides by H-bonding and metal ion coordination, and provides a solubility switch for mfps, most of which aggregate at pH ≥ 7–8.
DOI: 10.6084/m9.figshare.1380304.v1
title: Spatio-temporal regulation of the human licensing factor Cdc6 in replication and mitosis

description: To maintain genome stability, the thousands of replication origins of mammalian genomes must only initiate replication once per cell cycle. This is achieved by a strict temporal separation of ongoing replication in Sphase, and the formation of pre-replicative complexes in the preceding G1 phase, which “licenses” each origin competent for replication. The contribution of the loading factor Cdc6 to the timing of the licensing process remained however elusive due to seemingly contradictory findings concerning stabilization, degradation and nuclear export of Cdc6. Using fluorescently tagged Cdc6 (Cdc6-YFP) expressed in living cycling cells, we demonstrate here that Cdc6-YFP is stable and chromatin-associated during mitosis and G1 phase. It undergoes rapid proteasomal degradation during S phase initiation followed by active export to the cytosol during S and G2 phases. Biochemical fractionation abolishes this nuclear exclusion, causing aberrant chromatin association of Cdc6-YFP and, likely, endogenous Cdc6, too. In addition, we demonstrate association of Cdc6 with centrosomes in late G2 and during mitosis. These results show that multiple Cdc6-regulatory mechanisms coexist but are tightly controlled in a cell cycle-specific manner.
DOI: 10.6084/m9.figshare.1380122.v1
title: Interfacial pH during mussel adhesive plaque formation

description: Mussel (<i>Mytilus californianus</i>) adhesion to marine surfaces involves an intricate and adaptive synergy of molecules and spatio-temporal processes. Although the molecules, such as mussel foot proteins (mfps), are well characterized, deposition details remain vague and speculative. Developing methods for the precise surveillance of conditions that apply during mfp deposition would aid both in understanding mussel adhesion and translating this adhesion into useful technologies. To probe the interfacial pH at which mussels buffer the local environment during mfp deposition, a lipid bilayer with tethered pH-sensitive fluorochromes was assembled on mica. The interfacial pH during foot contact with modified mica ranged from 2.2 to 3.3, which is well below the seawater pH of ~ 8. The acidic pH serves multiple functions: it limits mfp-Dopa oxidation, thereby enabling the catecholic functionalities to adsorb to surface oxides by H-bonding and metal ion coordination, and provides a solubility switch for mfps, most of which aggregate at pH ≥ 7–8.