cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4ugbqw
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Memecylon agastyamalaianum E.S.S.Kumar, Antony & A.E.S.Khan"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054858-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfpwm6
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Medinilla eximia (Jack) Blume"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054857-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8229902
title: Data for Exploring Conformational Landscape of Cryo-EM Using Energy-Aware Pathfinding Algorithm

description: There are four experiments. The <strong>main.ipynb</strong> notebook in each experiment directory details the pathfinding process and evaluates different algorithms. Hsp90 (PDB ID: 2CG9): A synthetic dataset with two degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model. NLRP3 (PDB ID: 6NPY): A synthetic dataset with three degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model. EMPIAR-10076 in original latent space. EMPIAR-10076 with Analysis Landscape Pipeline: We also adhere to the analyze landscape pipeline designed by the cryoDRGN team. The Jupyter notebooks in that directory illustrate our implementation of this pipeline for the EMPIAR-10076 dataset, starting with <strong>1_sketching.ipynb</strong> and concluding in <strong>2_learning_mapping.ipynb</strong>. In the EMPIAR-10076 experiment, we utilize the training weights provided by the official cryoDRGN team. The complete weights and further information can be found here Additionally, we filter out states unrelated to conformational changes, following the guidance of the labels provided by the cryoDRGN team here.
DOI: 10.5281/zenodo.8289846
title: Data for Exploring Conformational Landscape of Cryo-EM Using Energy-Aware Pathfinding Algorithm

description: There are four experiments. The <strong>main.ipynb</strong> notebook in each experiment directory details the pathfinding process and evaluates different algorithms. Hsp90 (PDB ID: 2CG9): A synthetic dataset with two degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model. NLRP3 (PDB ID: 6NPY): A synthetic dataset with three degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model. EMPIAR-10076 in original latent space. EMPIAR-10076 with Analysis Landscape Pipeline: We also adhere to the analyze landscape pipeline designed by the cryoDRGN team. The Jupyter notebooks in that directory illustrate our implementation of this pipeline for the EMPIAR-10076 dataset, starting with <strong>1_sketching.ipynb</strong> and concluding in <strong>2_learning_mapping.ipynb</strong>. In the EMPIAR-10076 experiment, we utilize the training weights provided by the official cryoDRGN team. The complete weights and further information can be found here. Additionally, we filter out states unrelated to conformational changes, following the guidance of the labels provided by the cryoDRGN team here.
DOI: 10.5281/zenodo.10894154
title: Data for Exploring Conformational Landscape of Cryo-EM Using Energy-Aware Pathfinding Algorithm

description: There are four experiments. The main.ipynb notebook in each experiment directory details the pathfinding process and evaluates different algorithms.



	
Hsp90 (PDB ID: 2CG9): A synthetic dataset with two degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model.
	
NLRP3 (PDB ID: 6NPY): A synthetic dataset with three degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model.
	
EMPIAR-10076 in original latent space.
	
EMPIAR-10076 with Analysis Landscape Pipeline: We also adhere to the analyze landscape pipeline designed by the cryoDRGN team. The Jupyter notebooks in that directory illustrate our implementation of this pipeline for the EMPIAR-10076 dataset, starting with 1_sketching.ipynb and concluding in 2_learning_mapping.ipynb.



In the EMPIAR-10076 experiment, we utilize the training weights provided by the official cryoDRGN team. The complete weights and further information can be found here. Additionally, we filter out states unrelated to conformational changes, following the guidance of the labels provided by the cryoDRGN team here.
DOI: 10.5281/zenodo.8229901
title: Data for Exploring Conformational Landscape of Cryo-EM Using Energy-Aware Pathfinding Algorithm

description: There are four experiments. The main.ipynb notebook in each experiment directory details the pathfinding process and evaluates different algorithms.



	
Hsp90 (PDB ID: 2CG9): A synthetic dataset with two degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model.
	
NLRP3 (PDB ID: 6NPY): A synthetic dataset with three degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model.
	
EMPIAR-10076 in original latent space.
	
EMPIAR-10076 with Analysis Landscape Pipeline: We also adhere to the analyze landscape pipeline designed by the cryoDRGN team. The Jupyter notebooks in that directory illustrate our implementation of this pipeline for the EMPIAR-10076 dataset, starting with 1_sketching.ipynb and concluding in 2_learning_mapping.ipynb.



In the EMPIAR-10076 experiment, we utilize the training weights provided by the official cryoDRGN team. The complete weights and further information can be found here. Additionally, we filter out states unrelated to conformational changes, following the guidance of the labels provided by the cryoDRGN team here.
DOI: 10.5281/zenodo.8233861
title: Data for Exploring Conformational Landscape of Cryo-EM Using Energy-Aware Pathfinding Algorithm

description: There are four experiments. The <strong>main.ipynb</strong> notebook in each experiment directory details the pathfinding process and evaluates different algorithms. Hsp90 (PDB ID: 2CG9): A synthetic dataset with two degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model. NLRP3 (PDB ID: 6NPY): A synthetic dataset with three degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model. EMPIAR-10076 in original latent space. EMPIAR-10076 with Analysis Landscape Pipeline: We also adhere to the analyze landscape pipeline designed by the cryoDRGN team. The Jupyter notebooks in that directory illustrate our implementation of this pipeline for the EMPIAR-10076 dataset, starting with <strong>1_sketching.ipynb</strong> and concluding in <strong>2_learning_mapping.ipynb</strong>. In the EMPIAR-10076 experiment, we utilize the training weights provided by the official cryoDRGN team. The complete weights and further information can be found here. Additionally, we filter out states unrelated to conformational changes, following the guidance of the labels provided by the cryoDRGN team here.
DOI: 10.5281/zenodo.8238030
title: Data for Exploring Conformational Landscape of Cryo-EM Using Energy-Aware Pathfinding Algorithm

description: There are four experiments. The <strong>main.ipynb</strong> notebook in each experiment directory details the pathfinding process and evaluates different algorithms. Hsp90 (PDB ID: 2CG9): A synthetic dataset with two degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model. NLRP3 (PDB ID: 6NPY): A synthetic dataset with three degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model. EMPIAR-10076 in original latent space. EMPIAR-10076 with Analysis Landscape Pipeline: We also adhere to the analyze landscape pipeline designed by the cryoDRGN team. The Jupyter notebooks in that directory illustrate our implementation of this pipeline for the EMPIAR-10076 dataset, starting with <strong>1_sketching.ipynb</strong> and concluding in <strong>2_learning_mapping.ipynb</strong>. In the EMPIAR-10076 experiment, we utilize the training weights provided by the official cryoDRGN team. The complete weights and further information can be found here. Additionally, we filter out states unrelated to conformational changes, following the guidance of the labels provided by the cryoDRGN team here.
DOI: 10.5281/zenodo.8351777
title: Data for Exploring Conformational Landscape of Cryo-EM Using Energy-Aware Pathfinding Algorithm

description: There are four experiments. The <strong>main.ipynb</strong> notebook in each experiment directory details the pathfinding process and evaluates different algorithms. Hsp90 (PDB ID: 2CG9): A synthetic dataset with two degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model. NLRP3 (PDB ID: 6NPY): A synthetic dataset with three degrees of conformational changes. The .mrcs and .star files (convert into .pkl file first use cryodrgn functions) serve as training inputs for the cryoDRGN model. EMPIAR-10076 in original latent space. EMPIAR-10076 with Analysis Landscape Pipeline: We also adhere to the analyze landscape pipeline designed by the cryoDRGN team. The Jupyter notebooks in that directory illustrate our implementation of this pipeline for the EMPIAR-10076 dataset, starting with <strong>1_sketching.ipynb</strong> and concluding in <strong>2_learning_mapping.ipynb</strong>. In the EMPIAR-10076 experiment, we utilize the training weights provided by the official cryoDRGN team. The complete weights and further information can be found here. Additionally, we filter out states unrelated to conformational changes, following the guidance of the labels provided by the cryoDRGN team here.
DOI: 10.15468/dl.swk53k
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microcos sinuata (Wall. ex Mast.) Burret"
 ]
}

 The dataset includes 33 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054859-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfa6e8
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Millettia ebenifera (Bertol.) J.E.Burrows & Lötter"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054860-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avaath
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moraea orthrosantha Goldblatt & J.C.Manning"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054861-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grb2fb
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Memecylon alatum Aug.DC."
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054863-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apqyyx
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marrubium depauperatum Boiss. & Balansa"
 ]
}

 The dataset includes 18 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054862-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bcnhfw
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Medinilla falcata H.Perrier"
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054864-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxzn7c
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microcos stauntoniana G.Don"
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054866-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dakfv7
title: Occurrence Download

description: A dataset containing 318 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Millettia eetveldeana (Micheli) Hauman"
 ]
}

 The dataset includes 318 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054865-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.anqjff
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moraea pallida (Baker) Goldblatt"
 ]
}

 The dataset includes 376 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054867-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.95fb4y
title: Occurrence Download

description: A dataset containing 370 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marrubium deserti (de Noé) Coss."
 ]
}

 The dataset includes 370 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054869-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3fk37t
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Memecylon albescens Jacq.-Fél."
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054868-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yabcuh
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is one of (CHN.23.15_1, CHN.23.15.10_1)",
 "TaxonKey is Ardea cinerea Linnaeus, 1758"
 ]
}

 The dataset includes 31 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054870-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyudbt
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Medinilla fasciculata Baker"
 ]
}

 The dataset includes 75 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054871-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.utzhgk
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microcos stylocarpoides Burret"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054872-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4cxfcb
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Millettia elongatistyla J.B.Gillett"
 ]
}

 The dataset includes 45 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054873-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25479805
title: Supplemental data - Understanding changes in echocardiographic parameters at different ages following fetal growth restriction: a systematic review and meta-analysis

description: Our meta-analysis revealed echocardiographic differences between fetal growth restricted and control offspring in humans during the neonatal period: a reduced left ventricular mass and interventricular septum thickness, reduced mitral annular peak velocity and mitral lateral early diastolic velocity. We were unable to pool echocardiographic parameters in animal studies and human adults due to an insufficient number of studies per individual outcome. The few studies on myocardial strain analysis showed small preclinical changes in FGR offspring.
DOI: 10.6084/m9.figshare.25479805.v1
title: Supplemental data - Understanding changes in echocardiographic parameters at different ages following FGR: a systematic review and meta-analysis

description: Our meta-analysis revealed echocardiographic differences between fetal growth restricted and control offspring in humans during the neonatal period, namely: a reduced left ventricular mass and interventricular septum thickness, reduced mitral annular peak velocity and mitral lateral early diastolic velocity. We were unable to pool echocardiographic parameters in animal studies due to an insufficient number of studies per individual outcome. The few studies on myocardial strain analysis unanimously showed small preclinical changes in FGR offspring.
DOI: 10.15468/dl.d6dbyh
title: Occurrence Download

description: A dataset listing the 30 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Living Specimen, Specimen, Material citation, Material sample, Human Observation, Observation, Machine Observation)",
 "Continent is Africa",
 "Country is one of (Benin, Burkina Faso, Ghana, Guinea, Guinea-Bissau, Nigeria, Gambia, Liberia, Mali, Niger, Senegal, Sierra Leone, Togo)",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Taxon match fuzzy, Taxon match higher rank)",
 "TaxonKey is Vigna Savi"
 ]
}

 The dataset's 30 records were derived from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054846-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6unwcu
title: Occurrence Download

description: A dataset containing 594 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moraea papilionacea (L.f.) Ker Gawl."
 ]
}

 The dataset includes 594 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054874-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4bf6w
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marrubium duabense Murata"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054876-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q9ujyg
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Memecylon alipes R.D.Stone"
 ]
}

 The dataset includes 18 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054875-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6dtyzb
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Medinilla fasciculiflora Ohwi"
 ]
}

 The dataset includes 46 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054877-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rh422r
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microcos subepetala Stapf ex Ridl."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054878-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fjech
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Millettia elskensii De Wild."
 ]
}

 The dataset includes 104 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054879-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u2tvqr
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moraea patens (Goldblatt) Goldblatt"
 ]
}

 The dataset includes 18 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054880-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.