cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/b7q-3cb-1bf
title: Lacertidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rrm-v40-as5
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f8b-lsx-vfm
title: Amphibia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5z8-8nv-8dy
title: Chordata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/efy-zms-wph
title: †Echinolampas madurensis Martin, 1919

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3n2-d26-evg
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qk5-me5-qps
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/81c-s9l-425
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t96-f35-avq
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hkk-3ew-s6z
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0sl-v9c-pz2
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/60s-4gw-40n
title: Zygodontomys J. A. Allen, 1897

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4w9-8ad-rkw
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fnv-s4s-p1e
title: Atlantoxerus Forsyth Major, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/raj-jyl-z68
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zh3-x7t-yya
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h7e-msc-at7
title: Myodes Pallas, 1811

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wxr-14w-js9
title: Glaucidium perlatum (Vieillot, 1817)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cbn-gzs-41f
title: †Prolagus Pomel, 1853

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sj1-4x1-096
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/am5-zgr-dv2
title: Zygodontomys J. A. Allen, 1897

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.8gjjqz
title: Occurrence Download

description: A dataset containing 317 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aplysia parvula"
 ]
}

 The dataset includes 317 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013252-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/qll-94y-ps2
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qvq-fkr-5a4
title: Aves

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.2vgrs7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinogammarus ischnus",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013253-250811113504898/datasets/export for details.
DOI: 10.3535/44g-zbs-lcq
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7dd-dp6-5z4
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.8szkrj
title: Occurrence Download

description: A dataset containing 8516 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galium bungei"
 ]
}

 The dataset includes 8516 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013251-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/a4m-r82-yh0
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sz0-5dg-0cc
title: †Prolagus Pomel, 1853

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yhg-5lt-451
title: Aves

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/agt-6p5-6ta
title: Chordata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z6x-02b-zjb
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8nw-kzr-91l
title: Bufotes viridis (Laurenti, 1768)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ncg-9g1-sfn
title: Amphibia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/95n-bxh-q6a
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9xv-k17-f4z
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/an3-13q-fyp
title: Mytilus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8fx-zyj-afm
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gg7-kkj-lb0
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mev-3gz-yy6
title: Myodes Pallas, 1811

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y90-kvv-c78
title: Amphibia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/scx-b8n-wd4
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/syn-5lk-xbs
title: Pterostichus (Steropus) Dejean, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/209-362-n8s
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7b9-jm8-aan
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9fc-yjf-ve3
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x3m-rk8-zxw
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2xj-2qk-3hn
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kwe-p7w-l7g
title: †Goniopora anomala (Reuss, 1866)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lm1-r7g-rgd
title: Latonia Meyer, 1843

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zyj-ydm-1ct
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.7uynxp
title: Occurrence Download

description: A dataset containing 1092635 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sus scrofa"
 ]
}

 The dataset includes 1092635 records from 3230 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013132-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/5zp632d7wm.1
title: Data collected from the Baidu Migration Platform

description: The data come from the Baidu Migration Platform (https://qianxi.baidu.com), a platform for public use and access to big data. The dataset has been processed to remove all direct identifiers (e.g., names, addresses, IP addresses) and indirect identifiers (e.g., specific dates and locations have been aggregated to municipal-level or wider scales). No personal or group-level identities can be inferred from the data, which meets the requirements of the CC BY 4.0 license. This study does not involve human subjects or identifiable data, and all data usage complies with the platform's terms of service and relevant legal regulations.
DOI: 10.15468/dl.sykues
title: Occurrence Download

description: A dataset containing 28468 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Parthenium hysterophorus L."
 ]
}

 The dataset includes 28468 records from 328 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015256-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/97p7knbk42.1
title: Pancreatic Cancer Biomedical Knowledge Graph

description: This dataset comprises approximately 1 million high-confidence biomedical triples focused on pancreatic cancer, constructed from a curated set of 23 relevant biomedical entities (KRAS, TP53, gemcitabine) and 11 common relation types ( mutated_in, treats, interacts_with). Each triple is embedded in a synthetic, natural language sentence mimicking scientific phrasing and is paired with a simulated attention score ranging from 0.75 to 1.00, reflecting transformer-based model confidence. Heuristic boosting was applied to biologically plausible combinations, resulting in an average attention score near 0.88. This structured resource is ideal for training, validating, or benchmarking biomedical NLP models and knowledge extraction systems within the context of pancreatic cancer.
DOI: 10.17632/h3rbc6b6yy.1
title: RNA sequencing data

description: RNA Sequencing of Rat Livers Following High-Fat, High-Carbohydrate Diet With or Without Lobeglitazone Treatment.
DOI: 10.17632/pbnjsgdd5b.1
title: Peel-and-Roll Biopsy: A Practical Technique for Tissue Sampling in Fragile Skin Conditions

description: 1. Video demonstration of the peel-and-roll biopsy technique in a representative patient with pemphigus vulgaris, illustrating the atraumatic retrieval and preparation of a detached epidermal sheet for histopathological examination
2. Supplementary Fig 1. Representative tissue section shows a rolled-up, detached horny layer with mounds of parakeratosis, with focal cluster of acantholytic cells, compatible with Staphylococcal scalded skin syndrome (SSSS) (Hematoxylin and eosin, 100x).
3. Supplementary Fig 2. (A) Representative tissue sections from a patient with pemphigus vulgaris, showing “Swiss-roll” configuration at low-power magnification (Hematoxylin and eosin, 100x). (B) Intraepidermal separation with a blister roof and distinct acantholysis can be seen at high power view (Hematoxylin and eosin, 400x).
DOI: 10.15468/dl.kahk7b
title: Occurrence Download

description: A dataset containing 6507045 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Camarhynchus psittacula Gould, 1837, Platyspiza crassirostris (Gould, 1837), Geospiza magnirostris Gould, 1837, Camarhynchus parvulus (Gould, 1837), Mimus parvulus (Gould, 1837), Certhidea olivacea Gould, 1837, Camarhynchus pallidus (P.L.Sclater & Salvin, 1870), Zenaida galapagoensis Gould, 1841, Geospiza fuliginosa Gould, 1837, Setophaga petechia (Linnaeus, 1766), Geospiza fortis Gould, 1837, Chromatomyia horticola (Goureau, 1851), Ceutorhynchus erysimi (J.C.Fabricius, 1787), Acyrthosiphon pisum (Harris, 1776), Sitobion miscanthi (Takahashi, 1921), Colladonus montanus reductus (Van Duzee, 1917), Bicyrtes ventralis (Say, 1824), Andrena bicolor Fabricius, 1775, Andrena vaga Panzer, 1799, Eupelmus hayei Gibson & Fusu, Mesopolobus gemellus Baur & Muller, 2007, Neoleucinodes elegantalis Guenée, 1854, Ostrinia furnacalis (Guenée, 1854), Diomedea exulans Linnaeus, 1758, Xanthomonas hortorum_A, Xanthomonas vesicatoria, Xanthomonas euvesicatoria Jones et al., 2006, Diaporthe sojae Lehman, Phytophthora capsici Leonian, Xanthomonas perforans Jones et al., 2006, Prodiplosis longifila Gagné, 1986, Trogon elegans Gould, 1834, Symmetrischema dulce Povolný, 1984, Symmetrischema borsaniella (Köhler, 1939), Symmetrischema capsicivorum Povolný, 1973, Archips seditiosa (Meyrick, 1921), Euzophera perticella Ragonot, 1888, Symmetrischema capsica (Bradley & Povolný, 1965), Tretogonia notatifrons Melichar, 1926, Hebata capsicae (Ahmed, Samad & Naheed, 1981), Amata passalis Fabricius, 1781, Manduca quinquemaculatus Haworth, 1803, Polyphagotarsonemus latus (Banks, 1904), Utetheisa pulchella Linnaeus, 1758, Trichogramma sibiricum Sorokina, 1980, Trichogramma nubilale Ertle & Davis, 1975, Eurytoma chaitra Narendran, 1994, Goethella asulcata Girault, 1928, Ceratoneura indi Girault, 1917, Trichogramma brassicae Bezdenko, 1968)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6507045 records from 1124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015252-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29126876
title: Differential Methylation Analysis Using Multi-Factor Design in BS-seq Data

description: This R script performs differential methylation analysis on bisulfite sequencing (BS-seq) data using a multi-factor experimental design. It leverages the <b>DSS</b> package to model methylation levels across multiple timepoints and biological conditions (e.g., control vs. diapause). The script identifies both differentially methylated loci (DMLs) and regions (DMRs), and supports statistical testing of main effects and interactions.The analysis is based on a <code>BSseq</code> object previously constructed from DSS-formatted files (e.g., via <code>makeobject.r</code>).<b>Process Overview:</b>Loads a pre-saved R environment (<code>Loaded_Dataframe.RData</code>) containing the <code>BSobj</code>.Defines a two-factor experimental design (timepoint × condition).Fits a multi-factor model using <code>DMLfit.multiFactor()</code>.Conducts hypothesis tests for condition, timepoint, and interaction effects.Calls significant DMRs and DMLs based on p-value and FDR thresholds.Outputs result tables to disk for further analysis or visualization.<b>Inputs:</b><code>Loaded_Dataframe.RData</code> containing a <code>BSseq</code> object (<code>BSobj</code>).Sample metadata encoded directly in the script:<code>timepoint</code>: e.g., Day6, Day12, ..., Day30<code>condition</code>: e.g., control, diapause<b>Outputs:</b><code>dmls.condition.txt</code>: DMLs by condition<code>dmls.timepoint.txt</code>: DMLs by timepoint<code>dmls.txt</code>: DMLs by interactionOptional output: top-ranked CpGs and DMR regions for each test<b>Software Requirements:</b>R (≥ 4.0)Packages: <code>DSS</code>, <code>bsseq</code><b>Usage Notes:</b>The design matrix assumes 40 samples with balanced replicates across timepoints and conditions. Adjust <code>timepoint</code> and <code>condition</code> vectors if your dataset differs.Adjust thresholds and coefficients in <code>DMLtest.multiFactor()</code> and <code>callDMR()</code> as needed for your specific biological questions.Ensure <code>BSobj</code> is correctly matched to sample names used in the experimental design.
DOI: 10.6084/m9.figshare.29126876.v1
title: Differential Methylation Analysis Using Multi-Factor Design in BS-seq Data

description: This R script performs differential methylation analysis on bisulfite sequencing (BS-seq) data using a multi-factor experimental design. It leverages the <b>DSS</b> package to model methylation levels across multiple timepoints and biological conditions (e.g., control vs. diapause). The script identifies both differentially methylated loci (DMLs) and regions (DMRs), and supports statistical testing of main effects and interactions.The analysis is based on a <code>BSseq</code> object previously constructed from DSS-formatted files (e.g., via <code>makeobject.r</code>).<b>Process Overview:</b>Loads a pre-saved R environment (<code>Loaded_Dataframe.RData</code>) containing the <code>BSobj</code>.Defines a two-factor experimental design (timepoint × condition).Fits a multi-factor model using <code>DMLfit.multiFactor()</code>.Conducts hypothesis tests for condition, timepoint, and interaction effects.Calls significant DMRs and DMLs based on p-value and FDR thresholds.Outputs result tables to disk for further analysis or visualization.<b>Inputs:</b><code>Loaded_Dataframe.RData</code> containing a <code>BSseq</code> object (<code>BSobj</code>).Sample metadata encoded directly in the script:<code>timepoint</code>: e.g., Day6, Day12, ..., Day30<code>condition</code>: e.g., control, diapause<b>Outputs:</b><code>dmls.condition.txt</code>: DMLs by condition<code>dmls.timepoint.txt</code>: DMLs by timepoint<code>dmls.txt</code>: DMLs by interactionOptional output: top-ranked CpGs and DMR regions for each test<b>Software Requirements:</b>R (≥ 4.0)Packages: <code>DSS</code>, <code>bsseq</code><b>Usage Notes:</b>The design matrix assumes 40 samples with balanced replicates across timepoints and conditions. Adjust <code>timepoint</code> and <code>condition</code> vectors if your dataset differs.Adjust thresholds and coefficients in <code>DMLtest.multiFactor()</code> and <code>callDMR()</code> as needed for your specific biological questions.Ensure <code>BSobj</code> is correctly matched to sample names used in the experimental design.
DOI: 10.15468/dl.dbcut7
title: Occurrence Download

description: A dataset containing 1198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is one of (Africa, Asia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hyracoidea"
 ]
}

 The dataset includes 1198 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015265-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29070383
title: Data S1 from Diverse relationships between amplitude and frequency in bird vocalizations

description: Data used for analyses; copy of 'ampfreq_data.csv' in Dryad but with metadata included.
DOI: 10.6084/m9.figshare.29070383.v1
title: Data S1 from Diverse relationships between amplitude and frequency in bird vocalizations

description: Data used for analyses; copy of 'ampfreq_data.csv' in Dryad but with metadata included.
DOI: 10.15468/dl.ktvumg
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Syrmaticus humiae (Hume, 1881)",
 "Year 2005-2025"
 ]
}

 The dataset includes 85 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015266-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ybrhwv3hz7.1
title: WO₃ Nanoparticle Size Control and the Ce/La Doping for Optimization of Triboelectric Layer to Improve TENG Output

description: The images can be opened with Origin software to obtain the relevant data，thanks.
DOI: 10.6084/m9.figshare.29126873
title: Construction of BSseq Object from Preprocessed Methylation Data

description: This R script aggregates multiple preprocessed methylation count files into a single <code>BSseq</code> object using the <b>DSS</b> and <b>bsseq</b> packages. The generated object is suitable for differential methylation analysis in bisulfite sequencing (BS-seq) experiments.The script expects input files produced from a binomial filtering step (e.g., from a script like <code>formattingv2.r</code>), structured in DSS-compatible format with columns: <code>chr</code>, <code>pos</code>, <code>N</code>, and <code>X</code>.<b>Process Overview:</b>Loads 40 paired <code>.txt</code> files representing different samples and conditions.Constructs a <code>BSseq</code> object using <code>makeBSseqData()</code>, associating each dataset with a sample ID.Saves the full R environment to <code>Loaded_Dataframe.RData</code> for downstream analysis (e.g., in <code>experimentaldesign.r</code>).<b>Inputs:</b>40 DSS-formatted methylation files (<code>W1__DSS_Format.txt</code>, ..., <code>W40__DSS_Format.txt</code>), each with:<code>chr</code>: chromosome<code>pos</code>: position<code>N</code>: total read coverage<code>X</code>: number of methylated reads<b>Outputs:</b>A <code>BSseq</code> object containing all samples.Saved R workspace as <code>Loaded_Dataframe.RData</code> (contains the <code>BSobj</code>).<b>Software Requirements:</b>R (≥ 4.0)Packages: <code>DSS</code>, <code>bsseq</code><b>Usage Notes:</b>Ensure all 40 DSS format files are present in the working directory before running.The sample labels used in <code>makeBSseqData()</code> (e.g., <code>"D6C1"</code>, <code>"D6D1"</code>, etc.) should align with your experimental design matrix for consistency in downstream modeling.The saved <code>.RData</code> file is expected by scripts performing differential methylation analysis, such as <code>experimentaldesign.r</code>.