cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.68gm7/1
title: Seed dispersal effectiveness stages for sites: Maranchón and Torremocha and habitats: woodland and old fields

description: Data on seed dispersal, post-dispersal predation, seedling emergence and survival in Maranchon site woodland habitat; Maranchón site old fields habitat and Torremocha site woodland habitat, Torremocha site old fields habitat. These data were used to estimate seed dispersal effectiveness for each disperser. Seed dispersal is equal to the Quantity component. (QNT) Seedling survival is equal to Seed Dispersal Effectiveness (SDE) and the Quality component (QLT) is obtained by simplicity (SDE/QNT=QLT). SDE landscape graphs were plotted using the mean and SE calculated on these data (Figs. 2 and 3). Additional file on microhabitat cover was used to estimate overall SDE weighting the contribution of each disperser in each microhabitat by the relative cover of the corresponding microhabitat in each habitat type.
DOI: 10.5061/dryad.8m3h4/1
title: Supplemental_data1_Transcript_contigs
DOI: 10.5061/dryad.8m3h4/2
title: Supplemental_data2_Transcript_annotation

description: Transcript annotation
DOI: 10.5061/dryad.977b4/1
title: communitydata

description: Plant and animal data from from sites in the great basin
DOI: 10.5061/dryad.b1q50/1
title: Counts of seedling figs and predictor variables in center plots

description: This data was collected in the field in fifty-two 30 m x 30 m plots in southwest Florida. SITECODE and IDENT columns are unique names for each plot, Y_PROJ and X_PROJ are the UTM coordinates (NAD83/ zone 17N) of the center of each plot, cabbage palms is the number of cabbage palms in each plot, aurea seedlings and microcarpa seedlings are counts of fig seedlings of Ficus aurea and Ficus microcarpa in each plot, canopy cover is estimated canopy cover over each plot (on a scale of 1-5), understory height represents the mean height of understory vegetation (in meters) in each plot and microcarpa and aurea DBH represent the summed DBH (in cm) of all reproductive adult figs in a 300 m radius around each plot.
DOI: 10.5061/dryad.b1q50/2
title: Location and size of adult Ficus aurea trees

description: This file contains the size and location of all reproductive adult Ficus aurea trees within 300 m of center plots. The column Sitecode matches the column of the same name in the "Center plots.csv" file. The DBH column is the diameter at breast height in cm of adult trees, Distance is distance from the trunk of the tree to the center of the center plot in m, and y and x are the coordinates in UTM  (NAD83/ zone 17N)  of each tree.
DOI: 10.5061/dryad.b1q50/3
title: Location and size of adult Ficus microcarpa trees

description: This file contains the size and location of all reproductive adult Ficus microcarpa trees within 300 m of center plots. The column Sitecode matches the column of the same name in the "Center plots.csv" file. The DBH column is the diameter at breast height in cm of adult trees, Distance is distance from the trunk of the tree to the center of the center plot in m, and y and x are the coordinates in UTM  (NAD83/ zone 17N) of each tree.
DOI: 10.5061/dryad.c3575/1
title: PLOS ONE Growth and nitrogen uptake characteristics reveal outbreak mechanims of the opportunistic macroalga Gracilaria tenuistipitata

description: Salinity effects on RGR of Gracilaria tenuistipitata;Nitrogen source effects on  RGR of Gracilaria ;Nitrogen source uptake characteristic;Nitrogen preferences
DOI: 10.5061/dryad.fp7s8/1
title: Sentinel Bird Exposure Data

description: Data describing exposure status of each sentinel bird and amount of time spent housed in field cages
DOI: 10.5061/dryad.fp7s8/2
title: Vector Index Data Roost and Non-Roost

description: Data used for calculating average vector index at roost and non-roost sites
DOI: 10.5061/dryad.fp7s8/3
title: Bird Baited Trap and Paired Light Trap Data

description: Culex abundance and infection data from bird baited traps and paired light traps used to estimate per capita vector index from 2012
DOI: 10.5061/dryad.hf93m/2
title: AVC2 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/3
title: AVC3 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/4
title: AVC4 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/5
title: AVC5 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/6
title: GC1 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/7
title: GC2 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.t546g/1
title: Data - FE-2014-00415.R1

description: Raw data from field experiments and laboratory behavioral experiments examining non-vector insect responses to Cucumber mosaic virus infected plants. Also includes raw data from metabolite analysis of infected and healthy plants, with and without damage by Anasa tristis.
DOI: 10.7925/drs1.ucdlib_31212
title: 2 Chatham Row, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 2 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31216
title: 39 Clarendon Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31218
title: 1 Chatham Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 1466
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31222
title: 43 Clarendon Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31224
title: 3 Chatham Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.0039d/2
title: Data By Bin

description: This data file is used only for figure 1 in the paper. The column names are explained in the 'readme' file.
DOI: 10.5061/dryad.0039d/3
title: R Code

description: This is the complete R code used for analyses presented in the paper and to generate figures in the paper. Comments within the code explain the functions. Additional relevant information can be found in the 'readme' file.
DOI: 10.5061/dryad.1hn66/1
title: Supplemental data

description: pdf file of supplemental Figures S1-S17 and Tables S1-S3 from the publication.
DOI: 10.5061/dryad.1hn66/2
title: Supp dataset 1 seq alignment for phylogeny

description: Text file of alignment of ABCG proteins studied in the work.
DOI: 10.5061/dryad.1hn66/3
title: Supp dataset S2

description: Supplemental Dataset S2. Translatome data for suberin biosynthesis and ABCG genes in different root and shoot cell types.
DOI: 10.5061/dryad.1hn66/4
title: Supp dataset S3

description: Supplemental Dataset S3. Expression of NaCl-inducible suberin biosynthesis and ABCG genes in selected root cell types.
DOI: 10.5061/dryad.88896/1
title: Data of a case-control study of mtDNA copy number

description: Excel file containing epidemiological and experimental data on a case-control study of 196 prostate cancer patients and 196 age-paired healthy controls in a Chinese Han population.
DOI: 10.5061/dryad.bs910/1
title: all data_PRSL PM et al.

description: this excel file contains all the data (see readme file for a detailed description of each spreadsheet)
DOI: 10.5061/dryad.h7m7t/1
title: Microsatellite_genotypes_Genepop_format

description: Microsatellite genotypes in Genepop format
DOI: 10.5061/dryad.h7m7t/2
title: MHC_genotypes_Genepop_format

description: MHC genotypes in Genepop format. Microsatellite alleles were encoded as dominant biallelic loci.
DOI: 10.5061/dryad.hf93m/10
title: GC5 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/11
title: HCC1 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/12
title: HCC2 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/13
title: HCC3 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/14
title: HCC4 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/8
title: GC3 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.hf93m/9
title: GC4 Sequences file

description: These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 genome used to produce the data presented in tables and figures of the manuscript.
DOI: 10.5061/dryad.j5bf8/1
title: Maximum likelihood and Bayesian phylogenetic trees

description: Tree files named as “RAxML_PB2.tre” et al. are maximum likelihood (ML) trees of six internal segments (PB2, PB1, PA, NP, M and NS) composed of the same 2343 North America AIV strains, which were reconstructed using RAxML v7.04.  In each ML tree, the Mexico H7N3 strains are colored in red, and the lineage in which H7N3 Mexico fell is colored in blue; Tree files named as “HA.mcc.tre” et al. are temporally structured maximum clade credibility (mcc) time-scaled phylogenetic trees of all eight segments, which were generated using Beast V 1.7.3 and annotated with ancestral state changes (A: host order; B: host species; C: flyway; D: state/province; E: subtype) recovered from the discrete trait analyses. In each mcc tree, the branches are colored according to the trait state in the tree nodes. All tree files can be visualized in FigTree V 1.4.0.
DOI: 10.5061/dryad.t0391/1
title: DryadData_BonnPacificlamprey

description: These are the complete metadata of phenotypes and genotypes used in the analyses of this study on Pacific lamprey.  The 94 SNP genotypes are formatted into letter codes.  The data can be formatted for genepop, TASSEL, and DISTLM with some manipulation of data in this excel spreadsheet.  Comments are included on field headings to explain the terms.
DOI: 10.5061/dryad.vn6dv/1
title: Gilston_etal_2014_Figure 3

description: Raw data files from Figure 3 A and D
DOI: 10.5061/dryad.vn6dv/2
title: Gilston_etal_2014_Figure 4

description: Raw data from Gel-shift data in Figure 4
DOI: 10.5061/dryad.vn6dv/3
title: Gilston_etal_2014_Figure 5

description: Raw data from gel-shift experiments in Figure 5
DOI: 10.5061/dryad.vn6dv/4
title: Gilston_etal_2014_Figure 6

description: Raw data from Gel-shift experiments in Figure 6, includes additional Hill Plots references in manuscript
DOI: 10.5061/dryad.vn6dv/5
title: Gilston_etal_2014_Figure S3

description: Summary of raw data from Figure S3 Native gel shift experiments using varying percentages of acrylamide
DOI: 10.7925/drs1.ucdlib_31228
title: Clarendon Street 46 - 47

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31230
title: 6 Chatham Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31234
title: 54 Clarendon Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31236
title: 8 Chatham Street, Dublin 2, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.26k11/1
title: Data files (Matlab worksapces) packed in a ZIP archive - scenarios with no pathogens

description: Scenarios with no interaction between pathogens and hostsData set is packed in a ZIP archive. Names of catalogue in the archive indicate scenario parameters: host population size N and simulated mechanism of partner choice (RM - random mating, h0 - soft assortative mating, h1 - hard assortative mating; see Materials and Methods for details). Each scenario catalogue contains 100 files (Matlab workspaces) with saved variables of each of 100 independent replications. Saved variables:HED_scen – partner choice scenario (random mating HED_scen=NaN, soft assortative mating h0 HED_scen=0, hard assortative mating h1 HED_scen=1)        N – host population size               off_val_occ – offspring reproductive value at birth in subsequent mating attemptsh_mut_rat – host mutation ratehost_n_all – allelic richness across generationshost_time – host generation numbermat_occ_distr – number of mating pairs in subsequent mating attempts (first row indicate first mating attempt) saved every host generationCompl_all_hist – frequency distribution of MHC alleles saved in last 1400 host generations (host generations 1600-3000). Matrix of allele frequency distribution is saved as Matlab sparse matrix, (type full(Compl_all_hist) to transform Compl_all_hist into trajectories of allele frequency)in_pres_al – decimal labels of MHC alleles in allele frequency history matrix Compl_all_hist
DOI: 10.5061/dryad.26k11/2
title: Data files (Matlab worksapces) packed in a ZIP archive - scenarios with pathogens, mutation rate 1*10^-3

description: Scenarios in which pathogens interact with hosts Data set is packed in a ZIP archive. Names of catalogue in the archive indicate scenario parameters: host population size N and simulated mechanism of partner choice (RM - random mating, h0 - soft assortative mating, h1 - hard assortative mating; see Materials and Methods for details). Each scenario catalogue contains 100 files (Matlab workspaces) with saved variables of each of 100 independent replications. Saved variables:HED_scen – partner choice scenario (random mating HED_scen=NaN, soft assortative mating h0 HED_scen=0, hard assortative mating h1 HED_scen=1)        N – host population size               off_val_occ – offspring reproductive value at birth in subsequent mating attemptsh_mut_rat – host mutation ratebits_num – number of bits in MHC moleculematch – number of matching bits necessary for antigen presentation num_pat_spec – number of pathogen speciesp_mut_rat – pathogen mutation ratepat_gen – number of pathogen generations per one host generationpept_num – number of antigens produced by a pathogenhost_n_all – allelic richness across generationshost_time – host generation numbermat_occ_distr – number of mating pairs in subsequent mating attempts (first row indicate first mating attempt) saved every host generationCompl_all_hist – frequency distribution of MHC alleles saved in last 1400 host generations (host generations 1600-3000). Matrix of allele frequency distribution is saved as Matlab sparse matrix, (type full(Compl_all_hist) to transform Compl_all_hist into trajectories of allele frequency)in_pres_al – decimal labels of MHC alleles in allele frequency history matrix Compl_all_histmean_pres_pat – mean proportion of presented pathogensSD_pres_pat – standard deviation for the proportion of presented pathogens
DOI: 10.5061/dryad.26k11/3
title: Data files (Matlab worksapces) packed in a ZIP archive - scenarios with pathogens, mutation rate 2*10^-3

description: Scenarios in which pathogens interact with hosts Data set is packed in a ZIP archive. Names of catalogue in the archive indicate scenario parameters: host population size N and simulated mechanism of partner choice (RM - random mating, h0 - soft assortative mating, h1 - hard assortative mating; see Materials and Methods for details). Each scenario catalogue contains 100 files (Matlab workspaces) with saved variables of each of 100 independent replications. Saved variables:HED_scen – partner choice scenario (random mating HED_scen=NaN, soft assortative mating h0 HED_scen=0, hard assortative mating h1 HED_scen=1)        N – host population size               off_val_occ – offspring reproductive value at birth in subsequent mating attemptsh_mut_rat – host mutation ratebits_num – number of bits in MHC moleculematch – number of matching bits necessary for antigen presentation num_pat_spec – number of pathogen speciesp_mut_rat – pathogen mutation ratepat_gen – number of pathogen generations per one host generationpept_num – number of antigens produced by a pathogenhost_n_all – allelic richness across generationshost_time – host generation numbermat_occ_distr – number of mating pairs in subsequent mating attempts (first row indicate first mating attempt) saved every host generationCompl_all_hist – frequency distribution of MHC alleles saved in last 1400 host generations (host generations 1600-3000). Matrix of allele frequency distribution is saved as Matlab sparse matrix, (type full(Compl_all_hist) to transform Compl_all_hist into trajectories of allele frequency)in_pres_al – decimal labels of MHC alleles in allele frequency history matrix Compl_all_histmean_pres_pat – mean proportion of presented pathogensSD_pres_pat – standard deviation for the proportion of presented pathogens