cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7189406.v1
title: MWAS_weights.tar.gz

description: The folder contains 49,442 files, with each file containing weights information of SNPs on DNAm levels for each CpG site (as indicated by the corresponding file name). The weights were derived using elastic net based on a reference panel of postmortem dorsolateral prefrontal cortex brain tissue samples from 238 unrelated European ancestry individuals for which both genetic variation and DNAm have been measured.
DOI: 10.7284/103538
title: Gravimeter data collected during research cruise TN277 using a Bell BGM-3 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103515
title: Multibeam Echosounder data collected during research cruise TN277 using a Kongsberg EM302 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7189292
title: Dataset: Responses of macroalgae to CO2 enrichment cannot be inferred solely from their inorganic carbon uptake strategy

description: This is the dataset that is used for the publication "Responses of macroalgae to CO2 enrichment cannot be inferred solely from their inorganic carbon uptake strategy" in Ecology & Evolution.For methods, see the published paper.<br>The dataset contains the following files:Data_CA_FA.txt = contains the fatty acid concentrations used in the Correspondence AnalysisData_CA_FattyAcids.xlsx = contains fatty acid data used in the Correspondence AnalysisData_CA_FA_env.txt = contains information related to the samples used in the Correspondence AnalysisData_DIC.xlsx = contains Dissolved Inorganic Carbon data and calculations (dH, dDIC, dHCO3, dCO3, dCO2)Data_Length.xlsx = contains length data and calculationsData_LipidsFAContent.xlsx = contains total lipid and fatty acid content dataData_MANOVA.txt = contains the data that was used in the MANOVAData_NetPhotosynthesis.xlsx = contains the net photosynthesis data and calculationsData_PAM.txt = contains the data used for the PE curvesData_pH_measurements.xlsx = contains the pH measurements that were conducted by the culture systemData_Pigments.xlsx = contains the pigment data and calculationsData_StableIsotopes.xlsx = contains the stable isotope data and calculationsData_summarized_MANOVA.xlsx = contains the data that was used for the ANOVAData_Weight.xlsx = contains the weight data and calculationsScript_CorrespondenceAnalysis_FA.R = the R-script with the Correspondence Analysis codeScript_MANOVA.R = the R-script with the MANOVA codeScript_PEcurves.R = the R-script with the P/E curves code
DOI: 10.6084/m9.figshare.7189292.v1
title: Dataset: Responses of macroalgae to CO2 enrichment cannot be inferred solely from their inorganic carbon uptake strategy

description: This is the dataset that is used for the publication "Responses of macroalgae to CO2 enrichment cannot be inferred solely from their inorganic carbon uptake strategy" in Ecology & Evolution.For methods, see the published paper.<br>The dataset contains the following files:Data_CA_FA.txt = contains the fatty acid concentrations used in the Correspondence AnalysisData_CA_FattyAcids.xlsx = contains fatty acid data used in the Correspondence AnalysisData_CA_FA_env.txt = contains information related to the samples used in the Correspondence AnalysisData_DIC.xlsx = contains Dissolved Inorganic Carbon data and calculations (dH, dDIC, dHCO3, dCO3, dCO2)Data_Length.xlsx = contains length data and calculationsData_LipidsFAContent.xlsx = contains total lipid and fatty acid content dataData_MANOVA.txt = contains the data that was used in the MANOVAData_NetPhotosynthesis.xlsx = contains the net photosynthesis data and calculationsData_PAM.txt = contains the data used for the PE curvesData_pH_measurements.xlsx = contains the pH measurements that were conducted by the culture systemData_Pigments.xlsx = contains the pigment data and calculationsData_StableIsotopes.xlsx = contains the stable isotope data and calculationsData_summarized_MANOVA.xlsx = contains the data that was used for the ANOVAData_Weight.xlsx = contains the weight data and calculationsScript_CorrespondenceAnalysis_FA.R = the R-script with the Correspondence Analysis codeScript_MANOVA.R = the R-script with the MANOVA codeScript_PEcurves.R = the R-script with the P/E curves code
DOI: 10.7284/103663
title: Singlebeam Echosounder data collected during research cruise TN277 using a Knudsen 320B/R instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110544
title: Multiplexed data collected during research cruise TN278 using a UW DAS/IMET instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110542
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise TN278 using a Hawaii UHDAS instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7189235
title: A global view of <i>Gyroporus</i>: molecular phylogenetics, diversity patterns, and new species

description: <i>Gyroporus</i> (Gyroporaceae, Boletales) is a highly diverse genus of poroid ectomycorrhizal mushrooms with a nearly worldwide distribution. Previous attempts to unravel the diversity within this genus proved difficult due to the presence of semicryptic species and ambiguous results from analysis of ribosomal RNA markers. In this study, we employ a combined morphotaxonomic and phylogenetic approach to delimit species and elucidate geographic and evolutionary patterns in <i>Gyroporus</i>. For phylogenetic analyses, the protein-coding genes <i>atp6</i> (mitochondrial adenosine triphosphate [ATP] synthase subunit 6) and <i>rpb2</i> (nuclear second largest subunit of RNA polymerase II) were selected based on their utility in studies of Boletales. We infer several distinct clades, most notably one corresponding to <i>G. castaneus</i> as a speciose Northern Hemisphere group, another unifying <i>G. cyanescens</i> and like entities, and a third group unifying <i>G. longicystidiatus</i> and a New World sister species. Also notable is the recovery of a sister relationship between the <i>cyanescens</i> and <i>longicystidiatus</i> clades. We formally describe five new species of <i>Gyroporus</i>, outline a number of provisional species, and briefly discuss distributional patterns. This study provides an important scaffold for future work on this well-known but poorly understood genus of fungi.
DOI: 10.6084/m9.figshare.7189238
title: Inducing intravesical hyperthermia of the ex-vivo porcine bladder wall: radiofrequency-induction versus recirculation using a custom-made device

description: <b>Introduction:</b> Several techniques can be used to treat intravesical chemohyperthermia (ChHT). We compared radiofrequency-induced hyperthermia (RF-HT) with conductive hyperthermia (C-HT) for their ability to induce bladder wall temperatures of &gt;40.5 °C, the target temperature for ChHT. <b>Materials and Methods:</b> Fresh porcine bladders (<i>n</i> = 12) were placed in a temperature-controlled saline bath to simulate body temperature and circulation. HT was induced with RF-HT (43 °C) or C-HT (inflow temperature 44 and 46 °C) using a custom-made device. In two additional bladders, we varied intravesical solution and volume. Temperatures were recorded with a three-way catheter containing three mucosal and two urethral thermocouples (TCs) and a 915 MHz RF antenna, and with external TCs in the bladder wall at three different levels and three different locations. <b>Results:</b> Target temperature (40.5 °C) was reached in the submucosa at all locations by both techniques. In the detrusor, target temperature was reached by RF-HT at the bladder neck and side wall. C-HT<sub>46</sub> reached significantly higher submucosal temperatures at the side wall. The bladder dome seemed best heated by C-HT, although a high inflow temperature (46 vs. 44 °C) was required (<i>ns</i>). Intravesical saline resulted in higher temperatures than sterile water for RF-HT. A volume of 100 mL resulted in higher bladder dome temperatures for RF-HT, and higher bladder neck with lower dome temperatures for C-HT. <b>Conclusion:</b> Our results indicate a slightly superior heating capacity for RF-HT compared to C-HT, whereas for the bladder dome, the reverse seems true. Comparative studies are warranted to evaluate whether HT efficacy differs between both techniques, with emphasis on tumor location.
DOI: 10.6084/m9.figshare.7189235.v1
title: A global view of <i>Gyroporus</i>: molecular phylogenetics, diversity patterns, and new species

description: <i>Gyroporus</i> (Gyroporaceae, Boletales) is a highly diverse genus of poroid ectomycorrhizal mushrooms with a nearly worldwide distribution. Previous attempts to unravel the diversity within this genus proved difficult due to the presence of semicryptic species and ambiguous results from analysis of ribosomal RNA markers. In this study, we employ a combined morphotaxonomic and phylogenetic approach to delimit species and elucidate geographic and evolutionary patterns in <i>Gyroporus</i>. For phylogenetic analyses, the protein-coding genes <i>atp6</i> (mitochondrial adenosine triphosphate [ATP] synthase subunit 6) and <i>rpb2</i> (nuclear second largest subunit of RNA polymerase II) were selected based on their utility in studies of Boletales. We infer several distinct clades, most notably one corresponding to <i>G. castaneus</i> as a speciose Northern Hemisphere group, another unifying <i>G. cyanescens</i> and like entities, and a third group unifying <i>G. longicystidiatus</i> and a New World sister species. Also notable is the recovery of a sister relationship between the <i>cyanescens</i> and <i>longicystidiatus</i> clades. We formally describe five new species of <i>Gyroporus</i>, outline a number of provisional species, and briefly discuss distributional patterns. This study provides an important scaffold for future work on this well-known but poorly understood genus of fungi.
DOI: 10.6084/m9.figshare.7189238.v1
title: Inducing intravesical hyperthermia of the ex-vivo porcine bladder wall: radiofrequency-induction versus recirculation using a custom-made device

description: <b>Introduction:</b> Several techniques can be used to treat intravesical chemohyperthermia (ChHT). We compared radiofrequency-induced hyperthermia (RF-HT) with conductive hyperthermia (C-HT) for their ability to induce bladder wall temperatures of &gt;40.5 °C, the target temperature for ChHT. <b>Materials and Methods:</b> Fresh porcine bladders (<i>n</i> = 12) were placed in a temperature-controlled saline bath to simulate body temperature and circulation. HT was induced with RF-HT (43 °C) or C-HT (inflow temperature 44 and 46 °C) using a custom-made device. In two additional bladders, we varied intravesical solution and volume. Temperatures were recorded with a three-way catheter containing three mucosal and two urethral thermocouples (TCs) and a 915 MHz RF antenna, and with external TCs in the bladder wall at three different levels and three different locations. <b>Results:</b> Target temperature (40.5 °C) was reached in the submucosa at all locations by both techniques. In the detrusor, target temperature was reached by RF-HT at the bladder neck and side wall. C-HT<sub>46</sub> reached significantly higher submucosal temperatures at the side wall. The bladder dome seemed best heated by C-HT, although a high inflow temperature (46 vs. 44 °C) was required (<i>ns</i>). Intravesical saline resulted in higher temperatures than sterile water for RF-HT. A volume of 100 mL resulted in higher bladder dome temperatures for RF-HT, and higher bladder neck with lower dome temperatures for C-HT. <b>Conclusion:</b> Our results indicate a slightly superior heating capacity for RF-HT compared to C-HT, whereas for the bladder dome, the reverse seems true. Comparative studies are warranted to evaluate whether HT efficacy differs between both techniques, with emphasis on tumor location.
DOI: 10.7284/110549
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise TN278 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110545
title: Expendable Probe data collected during research cruise TN278 using a Sippican MK21 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110548
title: Gravimeter data collected during research cruise TN278 using a Bell BGM-3 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110547
title: Multibeam Echosounder data collected during research cruise TN278 using a Kongsberg EM302 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110546
title: Singlebeam Echosounder data collected during research cruise TN278 using a Knudsen 320B/R instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7189193
title: NT Pierce PRFB Proposal 2017

description: Here's my NSF PRFB Proposal for 2017 (funded, 3 years) <br>Area: Broadening Participation of Groups Underrepresented in Biology<br><br>Please contact me with questions.<br><br><br>
DOI: 10.6084/m9.figshare.7189193.v2
title: NT Pierce PRFB Proposal 2017

description: Here's my NSF PRFB Proposal for 2017 (funded, 3 years) <br>Area: Broadening Participation of Groups Underrepresented in Biology<br><br>Please contact me with questions.<br><br><br>
DOI: 10.6084/m9.figshare.7189193.v1
title: NT Pierce PRFB Proposal 2017

description: Here's my NSF PRFB Proposal for 2017 (funded, 3 years) <br>Area: Broadening Participation of Groups Underrepresented in Biology<br><br>Please contact me with questions.<br><br><br>
DOI: 10.7284/103536
title: Multiplexed data collected during research cruise TN279 using a UW DAS/IMET instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105390
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise TN279 using a Hawaii UHDAS instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103539
title: Gravimeter data collected during research cruise TN279 using a Bell BGM-3 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103516
title: Multibeam Echosounder data collected during research cruise TN279 using a Kongsberg EM302 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5519/qd.z6yd8i98
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (373 records)
DOI: 10.7284/103664
title: Singlebeam Echosounder data collected during research cruise TN279 using a Knudsen 320B/R instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105238
title: Multiplexed data collected during research cruise TN280 using a UW DAS/IMET instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7188929
title: Comparing oxygen uptake rates of driftwood and wrack generalist talitrid amphipods

description: Rates of oxygen consumption in seawater standardized for size (mass or body length) were compared for a representative supralittoral, wrack generalist talitrid – <i>Platorchestia platensis</i> and a representative driftwood, specialist talitrid – <i>Macarorchestia remyi</i>. Oxygen consumption in seawater was significantly less in <i>M. remyi</i>. This confirms the view that a reduced standard metabolic rate, and consequent reduction in growth rate and final size achieved, was an important physiological mechanism involved in dwarfism and adaptation to driftwood in <i>M. remyi</i>. Reduced standard metabolic rate in driftwood specialist talitrids is contrary to the metabolic theory of ecology.
DOI: 10.7284/105236
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise TN280 using a Hawaii UHDAS instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7188929.v1
title: Comparing oxygen uptake rates of driftwood and wrack generalist talitrid amphipods

description: Rates of oxygen consumption in seawater standardized for size (mass or body length) were compared for a representative supralittoral, wrack generalist talitrid – <i>Platorchestia platensis</i> and a representative driftwood, specialist talitrid – <i>Macarorchestia remyi</i>. Oxygen consumption in seawater was significantly less in <i>M. remyi</i>. This confirms the view that a reduced standard metabolic rate, and consequent reduction in growth rate and final size achieved, was an important physiological mechanism involved in dwarfism and adaptation to driftwood in <i>M. remyi</i>. Reduced standard metabolic rate in driftwood specialist talitrids is contrary to the metabolic theory of ecology.
DOI: 10.7284/105235
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise TN280 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105240
title: Gravimeter data collected during research cruise TN280 using a Bell BGM-3 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105239
title: Multibeam Echosounder data collected during research cruise TN280 using a Kongsberg EM302 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7188878
title: Supplementary Material for: Randomized Trial Comparing Proactive, High-Dose versus Reactive, Low-Dose Intravenous Iron Supplementation in Hemodialysis (PIVOTAL): Study Design and Baseline Data

description: <b><i>Background:</i></b> Intravenous (IV) iron supplementation is a standard maintenance treatment for hemodialysis (HD) patients, but the optimum dosing regimen is unknown. <b><i>Methods:</i></b> PIVOTAL (Proactive IV irOn Therapy in hemodiALysis patients) is a multicenter, open-label, blinded endpoint, randomized controlled (PROBE) trial. Incident HD adults with a serum ferritin &lt; 400 µg/L and transferrin saturation (TSAT) levels &lt; 30% receiving erythropoiesis-stimulating agents (ESA) were eligible. Enrolled patients were randomized to a proactive, high-dose IV iron arm (iron sucrose 400 mg/month unless ferritin &gt; 700 µg/L and/or TSAT ≥40%) or a reactive, low-dose IV iron arm (iron sucrose administered if ferritin &lt;200 µg/L or TSAT &lt; 20%). We hypothesized that proactive, high-dose IV iron would be noninferior to reactive, low-dose IV iron for the primary outcome of first occurrence of nonfatal myocardial infarction (MI), nonfatal stroke, hospitalization for heart failure or death from any cause. If noninferiority is confirmed with a noninferiority limit of 1.25 for the hazard ratio of the proactive strategy relative to the reactive strategy, a test for superiority will be carried out. Secondary outcomes include infection-related endpoints, ESA dose requirements, and quality-of-life measures. As an event-driven trial, the study will continue until at least 631 primary outcome events have accrued, but the expected duration of follow-up is 2–4 years. <b><i>Results:</i></b> Of the 2,589 patients screened across 50 UK sites, 2,141 (83%) were randomized. At baseline, 65.3% were male, the median age was 65 years, and 79% were white. According to eligibility criteria, all patients were on ESA at screening. Prior stroke and MI were present in 8 and 9% of the cohort, respectively, and 44% of patients had diabetes at baseline. Baseline data for the randomized cohort were generally concordant with recent data from the UK Renal Registry. <b><i>Conclusions:</i></b> PIVOTAL will provide important information about the optimum dosing of IV iron in HD patients representative of usual clinical practice. <b><i>Trial Registration:</i></b> EudraCT number: 2013-002267-25.
DOI: 10.7284/105244
title: Multiplexed data collected during research cruise TN281 using a UW DAS/IMET instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7188803
title: X-ray microtomography in herpetological research: a review - Supplementary material

description: Herpetological research, like any other (palaeo)biological science, relies heavily on accurate data collection, particularly visualisation and quantification of anatomical features. While several high-resolution imaging methods are currently available, one technique in particular, x-ray microtomography or micro-computed tomography, is on the verge of revolutionising our understanding of the morphology of amphibians and reptiles. Here, we present a review on the prevalence and trends of x-ray microtomography in herpetological studies carried out over the last two decades. We describe its current use, provide practical guidelines for future research that focusses on the morphological study of reptiles and amphibians, and highlight emerging trends including soft-tissue and <i>in vivo</i> scanning. Furthermore, while x-ray microtomography is a rapidly evolving field with great potential, various important drawbacks are associated with its use, including sample size effect and measurement errors resulting from differences in spatial resolution and preparation techniques. By providing recommendations to overcome these hurdles, we ultimately aim to maximise the benefits of x-ray microtomography to herpetological research.
DOI: 10.6084/m9.figshare.7188806
title: 2018_bee_nectar_concentration_PeerJ.csv

description: Nectar concentrations of bee visted flowers in agrecultural and non agrecultural landscapes
DOI: 10.7284/105242
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise TN281 using a Hawaii UHDAS instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition