cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rbh7nksbtc
title: Dataset on the Hanoian suburbanites’ perception and mitigation strategies towards air pollution

description: This is a dataset on how the suburbanites perceived and reacted with air pollution in Vietnam, an emerging country in Southeast Asia. A stratified random sampling technique and a face-to-face interview method were employed to survey 290 inhabitants who are living within Hanoi suburban, during November and December 2019. The constructed data contains three groups of information: (1) perspectives on air quality, causes, and impacts of polluted air, (2) respondent’s preventative measures to air pollution, and suggested solutions to improve air quality, and (3) demographic information of interviewees. The dataset could be useful for many scholars who want to conduct a further in-depth study and or environmentalists, policymakers who want to keep society informed about the air pollution-related progression, which could help design a desirable policy for mitigating and or controlling air pollution in Vietnam and beyond.
DOI: 10.6084/m9.figshare.11322842.v3
title: Unraveling the genetic diversity of Belgian Milk Sheep using medium density SNP genotypes: SNP genotypes

description: Title: Unraveling the genetic diversity of Belgian Milk Sheep using medium density SNP genotypesJournal: Animal Genetics <br>Article DOI: 10.1111/age.12891<br>
DOI: 10.6084/m9.figshare.12480416.v2
title: COVID-19 CT scans

description: chest CT images for COVID-19 patients
DOI: 10.6084/m9.figshare.23638854.v1
title: Malaria case study data.docx

description: Data for a single malaria patient with covid case study
DOI: 10.6084/m9.figshare.25106726.v1
title: <b>Genome assembly and annotation files of </b><b><i>Tamarix austromongolica</i></b>

description: The<i> T.austromongolica</i> genome has been assembled at the chromosome level using PacBio high-fidelity sequencing and Hi-C technology. The assembly size is 1.32 Gb, with 98.44% coverage by the 12 pseudochromosomes. The contig N50 is 52.57 MB and the BUSCO score is 98.2%. The genome contains 913.6 Mb (68.83%) of repetitive sequences and 22,374 protein-coding genes, 95.09% of which have functional annotations.
DOI: 10.6084/m9.figshare.6270209.v1
title: Additional file 6 from Restriction site-associated DNA sequencing for SNP discovery and high-density genetic map construction in southern catfish (<i>Silurus meridionalis</i>)

description: The genetic distances and consensus sequence of RAD markers in the integration map of southern catfish
DOI: 10.6084/m9.figshare.9927161.v1
title: Aging and vulnerability: an analysis of 1,062 elderly persons

description: Abstract Objective: To analyze the vulnerability of non-institutionalized elderly persons. Method: A cross-sectional, descriptive and analytical study was carried out using data of the City Health Department of Palmas, Paraná, Brazil, and the Vulnerable Elders Survey (VES-13) instrument. The questionnaires of people aged over 60 years who had answered the VES-13 questionnaire between January 2016 and December 2017 were included. The quantitative data were analyzed by the Student’s T-Test and the categorical data by the Chi-square and Fisher’s Exact Test. The correlation between the quantitative variables was performed by the Pearson correlation coefficient. Results: A total of 1,062 questionnaires were analyzed, of which 57.3% were female, with a mean age 69 (±7.8) years. In total 427 individuals (40.2%) were vulnerable and 635 (59.8%) were not vulnerable according to VES-13 score. A total of 635 (59.8%) elderly persons were classified as robust, 176 (16.6%) as at risk of frailty and 251 (23.6%) as frail. Women and those over 75 years were more vulnerable (p&lt;0.001). Conclusion: Vulnerability was related to the female sex, age over 75 years and the presence of chronic diseases, with these being the priority groups for the elaboration of intervention strategies in the health of the elderly.
DOI: 10.6084/m9.figshare.23798877.v3
title: CESDA Virtual Reality Pilot Training. Project 1

description: Data is collected from a research project by CESDA, university of aircraft pilots.The project aims to compare the engagement and workload between two different flight simulators: a conventional flight simulator (FSTD) and a virtual reality flight simulator (VR).The dataset comprises 29 student pilot participants (identified as A1 to A29 for confidentiality purposes).<br><br>It includes the following information for each participant:Empatica E4 data for both VR and FSTD experiments, providing physiological responses during the simulations.Chronometer data, synchronized with Empatica E4 data, to record the time periods of different flight tasks.NASA-TLX questionnaire responses, collected after each VR and FSTD experiment, to assess subjective workload.Flight hours experience of each pilot student at the time of the experiment.The data collected in this research project aims to shed light on the differences in engagement and workload experienced by student pilots in the two types of flight simulators, providing valuable insights for aviation training and simulator design.
DOI: 10.6084/m9.figshare.29123006.v1
title: Epidermal flavonol and anthocyanin content in leaves of Vaccinium myrtillus, Homogyne alpina and Soldanella carpatica, measured with Dualex Scientific +

description: Epidermal (A) flavonol and (B) anthocyanin contents measured at the adaxial and abaxial sides of leaves of Vaccinium myrtillus, Soldanella carpatica (overwintered), and Homogyne alpina growing in the Tatra Mountains, at different sites: understorey (Jaworzynka valley, 1080 m asl, 1125 m asl), clearing (Jaworzynka Valley, 1080 m asl, 1125 m asl), subalpine (Hala Gasienicowa, 1615 m asl), and peak alpine (Liliowe Pass, 1970 m asl) sites. Leaves were measured with Dualex Scientific + (Force-A, Paris-Sud, France) for 20 plants of each species at a given site.
DOI: 10.6084/m9.figshare.23295092.v1
title: Supplementary materials for the article entitled "<strong>The nature of lexical associations</strong> <strong>in a foreign language: valence, arousal and concreteness</strong>": Dataset of cue words and individual responses given by all participants in both languages.

description: Dataset of cue words and individual responses given by all participants in both languages.
DOI: 10.6084/m9.figshare.28740974.v1
title: Supplementary table 2 for Ghias et al.

description: Supplemental Table 2 for Ghias et al.
DOI: 10.6084/m9.figshare.6743207.v12
title: GBIF for CREST database for crestr -- Version 3

description: This database contains all the presence records of plants, beetles, chironomids, foraminifera and diatoms contained in the GBIF database in September 2024. This new version of the database has a new, refined spatial resolution at 5min (each grid cell in the previous version is now parted in 9 sub grid cells). The curation of the input data has also been largely improved.<br>The coordinates of the presence records have been homogenised on a 0.083x0.083° grid, and corresponding bioclimatic values from the Worldclim2.0 database have been added.<br>These data are formatted and ready to use by the <b>crestr R package</b>. More information about the data is available https://www.manuelchevalier.com/crestr/articles/calibration-data.html.<br><b>To download the latest version of the database, please follow this link: </b><sub><strong>https://figshare.com/articles/GBIF_for_CREST_database/6743207</strong></sub><br>Please cite all the appropriate datasets from the following list:GBIF.org (23 August 2024) GBIF Occurrence Download Part 1. https://doi.org/10.15468/dl.7bvejkGBIF.org (23 August 2024) GBIF Occurrence Download Part 2. https://doi.org/10.15468/dl.mpfc47GBIF.org (23 August 2024) GBIF Occurrence Download Part 3. https://doi.org/10.15468/dl.nuq5tnGBIF.org (23 August 2024) GBIF Occurrence Download Part 4. https://doi.org/10.15468/dl.q8zuhhGBIF.org (24 August 2024) GBIF Occurrence Download Part 5. https://doi.org/10.15468/dl.qwcs68GBIF.org (24 August 2024) GBIF Occurrence Download Part 6. https://doi.org/10.15468/dl.y9kpwcGBIF.org (24 August 2024) GBIF Occurrence Download Part 7. https://doi.org/10.15468/dl.uk2xv6GBIF.org (25 August 2024) GBIF Occurrence Download Part 8. https://doi.org/10.15468/dl.zgmnq9GBIF.org (26 August 2024) GBIF Occurrence Download Part 9. https://doi.org/10.15468/dl.68hqxg<br><br><br>
DOI: 10.6084/m9.figshare.8061398.v1
title: DepMap 19Q2 Public

description: This dataset contains the results of Avana library CRISPR-Cas9 genome-scale knockout (prefixed with Achilles) as well as mutation, copy number and gene expression data (prefixed with CCLE) for cancer cell lines as part of the Broad Institute’s Cancer Dependency Map project. We have repackaged our fileset to include all quarterly-updating datasets produced by DepMap. <br>The Avana CRISPR-Cas9 genome-scale knockout data has expanded to include 563 cell lines, the RNAseq data includes 1200 cell lines, and the copy number data includes 1,626 cell lines. Please see the README files for details regarding data processing pipeline procedures updates.<br>As our screening efforts continue, we will be releasing additional cancer dependency data on a quarterly basis for unrestricted use. For the latest datasets available, further analyses, and to subscribe to our mailing list visit https://depmap.org.<br>Descriptions of the experimental methods and the CERES algorithm are published in http://dx.doi.org/10.1038/ng.3984. Some cell lines were process using copy number data based on the Sanger Institute whole exome sequencing data (COSMIC: http://cancer.sanger.ac.uk.cell_lines, EGA accession number: EGAD00001001039) reprocessed using CCLE pipelines. A detailed description of the pipelines and tool versions for CCLE expression can be found here: https://github.com/broadinstitute/gtex-pipeline/blob/v9/TOPMed_RNAseq_pipeline.md. <br>
DOI: 10.17632/rb4b3nrzbw
title: Changes in soil properties and erosion resistance after high-severity post-fires

description: High-severity fires lead to significant changes in soil physicochemical properties, which further affects soil erosion processes and reduces soil erosion resistance.
DOI: 10.6084/m9.figshare.25230422.v2
title: Solanum commersonii genome sequence and annotation files

description: we provide the genome sequence and annotation files of Solanum commersonii in current study
DOI: 10.6084/m9.figshare.27678567.v1
title: Processed data files

description: Transcriptomic analysis revealed that differentially expressed genes in the absence of AoNmd5 were involved in carbohydrate metabolism, amino acid metabolism, lipid metabolism, transport and catabolism, energy metabolism, and translation.
DOI: 10.17632/dfwxzyts5s
title: Dermatoscopic features and potential pitfalls of artificial intelligence-based analysis of benign acral pigmented lesions in Black patients: a multi-center observational study

description: Dermatoscopic features and potential pitfalls of artificial intelligence-based analysis of benign acral pigmented lesions in Black patients: a multi-center observational study
DOI: 10.6084/m9.figshare.11500485.v1
title: Metadata record for: Dataset of human medial temporal lobe neurons, scalp and intracranial EEG during a verbal working memory task

description: This dataset contains key characteristics about the data described in the Data Descriptor Dataset of human medial temporal lobe neurons, scalp and intracranial EEG during a verbal working memory task. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.14272661.v2
title: Cleaned ChEMBL Data on Major Cytochrome Inhibitors

description: The following datasets include data on major cytochrome inhibitors and their physiochemical properties and half-maximum inhibitory concentration. Duplicates and data points flagged as potentially unreliable were removed from the dataset.
DOI: 10.6084/m9.figshare.26491588.v3
title: GPerturb: Gaussian process modelling of single-cell perturbation data

description: Pre-trained models and associated processed datasets for all analyses in the paper
DOI: 10.6084/m9.figshare.6189332.v1
title: Monthly air temperature for year 2003

description: Monthly air temperature statistically derived from satellite measurements for year 2003 with a spatial resolution of 0.05 decimal degrees.
DOI: 10.6084/m9.figshare.9945173.v1
title: Sharks in Greece - Social Media Citizen Science Project

description: The project aims to record the shark species that occurs in Greece. To achieve that we are using social media (i.e. Facebook, Instagram, Youtube, etc) and news media to record the observations that have be made by citizens (using the Citizen Science Method). <br>When needed more informations we contacted the citizens that have observed the sharks and asked them if they can give more data to their observations.<br>Then the data was recorded in a form (our database) which created for this project and the species were identified by shark experts (Greeks and other Nationalities).<br><br><br>
DOI: 10.17632/2cf55yfwr6
title: Journal of Studies in Islam and Psychology; No. 1

description: The main objective of Studies in Islam and Psychology is to provide an intellectual platform for national and international researchers to discuss their most recent findings related to Islamic psychology and counseling. By doing so, the journal hopes to improve the status of the field in Iran and in the world and to find solutions to theoretical and practical problems the profession is faced with. To serve this purpose, researchers are encouraged to submit their unpublished, original, full-length papers for potential publication in the journal. 

The journal is set to publish original articles on a wide range of issues including;

 The philosophy of psychology with a critical outlook from the perspective of Islam;
 The uses of psychology in the service of the Islamic society and its needs;
 The formation of psychology in the Islamic society;
 Psychological analysis of Islamic concepts in areas such as:
 1. Anthropology, such as: banned, impatience, hasty, captious, pious, faithful;
 2. Belief, such as: God, resurrection, Imamate, intercession, Paradise, Hell and ...;
 3. Value, such as: repentance, trust, self-esteem, mental relaxation, grief, fear;
 4. Practical instructions of Islam, such as: qisas (retaliation), prayers, inheritance, hajj, khums (one fifth);
 Study of psychological findings from Islamic perspective in terms of critique, confirmation and completion, alternative presentation, presentation of new theory;

To let individual researchers and libraries have access to the most recent research findings in the field, the journal allows open-access to its articles. This journal utilizes the Magiran and Noormags preservation systems to create a distributed archiving system for individual and libraries and to permit libraries stakeholders to create permanent archives of the journal.
DOI: 10.4121/12957986.v1
title: Climate Policy Database

description: The Climate Policy Database collects information on currently adopted policies related to climate change mitigation from countries worldwide. The objective of the website is to provide an open, collaborative platform for information access, policy analysis and good-practice sharing. All data can be downloaded via the policies page.
DOI: 10.6084/m9.figshare.25601097.v1
title: dataset.xlsx

description: This dataset contains ESG scores and sub-scores as well as bank-specific and macroeconomic data from eight Indian commercial banks.
DOI: 10.6084/m9.figshare.27159189.v1
title: Supplementary Material for: Comparative analyses reveal conserved and modified steps in the testis descent and scrotum development in mouse and opossum

description: Introduction: In many mammals, the testes descend from its abdominal position on the mesonephric kidney, and are housed in the scrotum. It has been speculated that metatherians and eutherians might have acquired the scrotal testis independently, because metatherians have the scrotum cranially to the phallus, while eutherians, such as humans and mice, possess it caudally. Rather, recent studies, based on sequence comparisons of testis-descent-related genes indicate that the metatherian-eutherian common ancestor might already possess the descent mechanisms. To further elucidate the path of scrotal testis evolution, it is informative to compare the processes of the descent and scrotum development between metatherian and eutherian model animals. Methods: In this study, we histologically and molecularly compare these processes in gray short-tailed opossum (Monodelphis domestica), the most commonly used metatherian experimental model, and compare them with those in mouse. Results: Our observations indicate that, while trans-abdominal phase of the descent appears to be largely similar, scrotal phase differs, due to their distinct scrotum positions. Our cell-labeling analyses and dynamic expression of Gsc1 reveal extensive cell/tissue rearrangements in murine scrotal development. In contrast, Gsc1 is not expressed in the developing genitalia and scrotal primordium of the opossum. Conclusion: Our results suggest recruitment of new regulatory pathways for the scrotum development and the scrotal phase of the testis descent during the evolution of eutherian mammals.
DOI: 10.17632/bwzdv623xn
title: Comparative proteome, transcriptome and co-expression network data set of six plant species

description: Proteome: MS data was searched with the MaxQuant software (version 1.5.7.5). Searches were performed against the following UniProt protein sequence databases (v20150827): Medicago truncatula, Arabidopsis thaliana, Solanum tuberosum, Oryza sativa, Physcomitrella patens, and Zea mays. Searches used the default precursor mass tolerances (20 ppm first search and 4.5 ppm main search) and a product mass tolerance of 0.35 Da. The in silico digest was set to specific tryptic cleavage and a maximum of two missed cleavages. The fixed modification specified were carbamidomethylation of cysteine residues, and variable modifications were oxidation of methionine and acetylation of protein N-terminus. Peptides and proteins groups were both filtered to a 1% FDR. Label-free quantification was performed within MaxQuant using MaxLFQ. Protein groups were screened for "Reverse" and "Contaminant" identifications. The final protein levels are the LFQ intensity values. Transcriptome: The compendia of transcriptomic datasets for 6 plant species were created using publicly available RNA-seq dataset from Sequence Read Archive. We used the Curse and Prose suite (http://bioinformatics.psb.ugent.be/webtools/Curse/) to construct these expression compendia. First, we searched for datasets corresponding to "RNA-seq" and "Transcriptome analysis" for each species, and manually excluded the experiments which contained mutant, knock-out, and transgenic lines by curating the metadata in the Curse interface. We passed the chosen experiments and genomic sequence files to the Prose tool, which downloads data, performs quality control, and quantifies transcript expression to normalized TPM values. To change the transcript level expression to gene level, we summed up the multiple values of transcript expression for one gene. Co-expression network: We defined a species-specific graph as a fully-connected weighted graph, where the weight corresponds to the Gaussian kernel-based similarity between two gene expression profiles. First, we collected genes that are defined in the orthogroups of 6 species in the previous step (see method in the paper). Then we generated a distance matrix by calculating the pairwise Euclidean distance between two genes of the transcriptome compendium, and finally we transformed it to the similarity matrix using the Gaussian kernel to map the nearer distance to higher similarity.
DOI: 10.6084/m9.figshare.16909450.v2
title: Gene expression

description: We evaluated the transcriptional landscape at single cell or whole tissue level in uninfected and SARS-CoV-2 infected lungs of humanized mice at multiple time points (2, 4, 7, 14, 28 dpi).
DOI: 10.6084/m9.figshare.25602414.v2
title: BIG

description: RAW DATA of the paper called "Modelling Alcohol-Associated Liver Disease in Humans using Adipose Stromal/Stem Cell-Derived Organoids" in Cell Reports Methods.
DOI: 10.6084/m9.figshare.27857970.v3
title: Spatiotemporal variation in the dissolved black carbon concentrations in three estuaries

description: This dataset contains the following data: sampling date, sampling locations, sample depths, salinity, total suspended matter (TSM) concentration; dissolved black carbon; and the deviation of dissolved black carbon to the conservative mixing between fresh and saline end-members.
DOI: 10.6084/m9.figshare.13102388.v1
title: Supplementary Material for: Relationship between Serum Uric Acid and Mortality Risk in Hemodialysis Patients: A Multicenter Prospective Cohort Study

description: <b><i>Background:</i></b> Several studies have reported that low serum uric acid (SUA) levels are related to increased risk of mortality in maintenance hemodialysis (MHD) patients. However, the possible detrimental effects of high SUA on the mortality risk have not been well examined. Moreover, the possible effect modifiers for the SUA-mortality association have not been fully investigated. To address the aforementioned gap, we aimed to explore the nonlinear relationship between SUA levels and all-cause and cardiovascular disease (CVD) mortality risk, and to examine any possible effect modifiers in MHD patients. <b><i>Methods:</i></b> We conducted a multicenter, prospective cohort study among 1,018 MHD patients from 8 hemodialysis centers. The primary outcome was all-cause mortality, and the secondary outcomes were CVD mortality and non-CVD mortality. <b><i>Results:</i></b> The mean value for SUA in the total population was 8.5 ± 1.9 mg/dL. The lowest and highest quintiles of SUA were &lt;7.0 and &gt;10.1 mg/dL, respectively. Over a median follow-up of 45.6 months, 343 deaths were recorded, of which 202 (58.9%) were due to CVD. When SUA was assessed as quintiles, a significantly higher risk of all-cause mortality was found in patients in quintile 1 (&lt;7.0 mg/dL; hazard ratio [HR], 1.33; 95% confidence interval [CI]: 1.02–1.73) or quintile 5 (≥10.1 mg/dL; HR, 1.47; 95% CI: 1.09–2.00), compared to those in quintiles 2–4 (7–10.1 mg/dL). Moreover, the U-shaped SUA-mortality association was mainly found in those with lower C-reactive protein levels (&lt;3 compared with ≥3 mg/L; <i>p</i> for interaction = 0.018). Similar trends were found for CVD mortality and non-CVD mortality. <b><i>Conclusion:</i></b> There was a U-shaped relationship between SUA levels and the risk of all-cause mortality, CVD mortality, and non-CVD mortality in MHD patients.
DOI: 10.6084/m9.figshare.16816099.v1
title: Hadal aragonite records venting of stagnant paleoseawater in the hydrated forearc mantle

description: This repository includes dataset used in the following article:Oyanagi, R., Okamoto, A., Satish-Kumar, M., Minami, M., Harigane, Y., Michibayashi, K. (2021) Hadal aragonite records venting of stagnant paleoseawater in the hydrated forearc mantle, <i>Communications Earth & Environment</i>. <br><br>Contents<b>thermoLT600bat.dat</b> : Thermodynamic dataset for Geochemist's Workbench.<br><br><b>result_ReactionPathModeling(FigureS5).xlsx</b> : Summary of the reaction path calculation used in Supplementary Figure 5.<br><br><b>X-ray CT data.zip</b> : X-ray CT data of serpentinized peridotite in DICOM format. These data are used in Figure 2d in the paper.<br><b>X-rayCT_movie.avi</b> : Field of view is 3 mm diameter. Dark gray part is serpentine. Light gray part is aragonite. Their intermediate is olivine. White part is spinel and magnetite.<br><b>Supplementary_Table_1.xlsx: </b> <b> </b>Microsoft Excel spreadsheet of the supplementary table 1.<br><br><b>Supplementary_Table_2.xlsx: </b> <b> </b>Microsoft Excel spreadsheet of the supplementary table 2.<br><br><b>Supplementary_Table_3.xlsx: </b> <b> </b>Microsoft Excel spreadsheet of the supplementary table 3.<br>