cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rwjkm6
title: Occurrence Download

description: A dataset containing 685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Celastrus orbiculatus",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 685 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049046-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14699704
title: (14)-Strobl2025A-DS0026 – SLICE-1 – Tribolium castaneum AGOC{ATub'Lamin°NB-mEmerald} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy – Part 1/2

description: (14)-Strobl2025A-DS0026 – SLICE-1 – Tribolium castaneum AGOC{ATub'Lamin°NB-mEmerald} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy – Part 1/2
DOI: 10.15468/dl.775nv2
title: Occurrence Download

description: A dataset listing the 8 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Gambia",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Soricidae, Erinaceidae)"
 ]
}

 The dataset's 8 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006526-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11994827
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.8m582n
title: Occurrence Download

description: A dataset containing 1067 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Poecilia reticulata Peters, 1859"
 ]
}

 The dataset includes 1067 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006525-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11186620
title: Characterizing Spatially Continuous Variations in Tissue Microenvironment through Niche Trajectory Analysis - Dataset

description: Recent technological developments have made it possible to map the spatial organization of a tissue at the single-cell resolution. However, computational methods for analyzing spatially continuous variations in tissue microenvironment are still lacking. Here we present ONTraC as a strategy that constructs niche trajectories using a graph neural network-based modeling framework. Our benchmark analysis shows that ONTraC performs more favorably than existing methods for reconstructing spatial trajectories. Applications of ONTraC to public spatial transcriptomics datasets successfully recapitulated the underlying anatomical structure, and further enabled detection of tissue microenvironment-dependent changes in gene regulatory networks and cell-cell interaction activities during embryonic development. Taken together, ONTraC provides a useful and generally applicable tool for the systematic characterization of the structural and functional organization of tissue microenvironments.
DOI: 10.5281/zenodo.14498408
title: Characterizing Spatially Continuous Variations in Tissue Microenvironment through Niche Trajectory Analysis - Dataset

description: Recent technological developments have made it possible to map the spatial organization of a tissue at the single-cell resolution. However, computational methods for analyzing spatially continuous variations in tissue microenvironment are still lacking. Here we present ONTraC as a strategy that constructs niche trajectories using a graph neural network-based modeling framework. Our benchmark analysis shows that ONTraC performs more favorably than existing methods for reconstructing spatial trajectories. Applications of ONTraC to public spatial transcriptomics datasets successfully recapitulated the underlying anatomical structure, and further enabled detection of tissue microenvironment-dependent changes in gene regulatory networks and cell-cell interaction activities during embryonic development. Taken together, ONTraC provides a useful and generally applicable tool for the systematic characterization of the structural and functional organization of tissue microenvironments.
DOI: 10.5281/zenodo.14511301
title: Characterizing Spatially Continuous Variations in Tissue Microenvironment through Niche Trajectory Analysis - Dataset

description: Recent technological developments have made it possible to map the spatial organization of a tissue at the single-cell resolution. However, computational methods for analyzing spatially continuous variations in tissue microenvironment are still lacking. Here we present ONTraC as a strategy that constructs niche trajectories using a graph neural network-based modeling framework. Our benchmark analysis shows that ONTraC performs more favorably than existing methods for reconstructing spatial trajectories. Applications of ONTraC to public spatial transcriptomics datasets successfully recapitulated the underlying anatomical structure, and further enabled detection of tissue microenvironment-dependent changes in gene regulatory networks and cell-cell interaction activities during embryonic development. Taken together, ONTraC provides a useful and generally applicable tool for the systematic characterization of the structural and functional organization of tissue microenvironments.
DOI: 10.5281/zenodo.14519865
title: Characterizing Spatially Continuous Variations in Tissue Microenvironment through Niche Trajectory Analysis - Dataset

description: Recent technological developments have made it possible to map the spatial organization of a tissue at the single-cell resolution. However, computational methods for analyzing spatially continuous variations in tissue microenvironment are still lacking. Here we present ONTraC as a strategy that constructs niche trajectories using a graph neural network-based modeling framework. Our benchmark analysis shows that ONTraC performs more favorably than existing methods for reconstructing spatial trajectories. Applications of ONTraC to public spatial transcriptomics datasets successfully recapitulated the underlying anatomical structure, and further enabled detection of tissue microenvironment-dependent changes in gene regulatory networks and cell-cell interaction activities during embryonic development. Taken together, ONTraC provides a useful and generally applicable tool for the systematic characterization of the structural and functional organization of tissue microenvironments.
DOI: 10.5281/zenodo.15571644
title: Characterizing Spatially Continuous Variations in Tissue Microenvironment through Niche Trajectory Analysis - Dataset

description: Recent technological developments have made it possible to map the spatial organization of a tissue at the single-cell resolution. However, computational methods for analyzing spatially continuous variations in tissue microenvironment are still lacking. Here we present ONTraC as a strategy that constructs niche trajectories using a graph neural network-based modeling framework. Our benchmark analysis shows that ONTraC performs more favorably than existing methods for reconstructing spatial trajectories. Applications of ONTraC to public spatial transcriptomics datasets successfully recapitulated the underlying anatomical structure, and further enabled detection of tissue microenvironment-dependent changes in gene regulatory networks and cell-cell interaction activities during embryonic development. Taken together, ONTraC provides a useful and generally applicable tool for the systematic characterization of the structural and functional organization of tissue microenvironments.
DOI: 10.15468/dl.894cn4
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Empidonax traillii extimus A.R.Phillips, 1948)",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 96 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011814-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hnp9kx
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((21.5 -32.4,40.9 -32.4,40.9 3.1,21.5 3.1,21.5 -32.4))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Senaspis haemorrhoa (Gerstaecker, 1871)",
 "Year 1970-2024"
 ]
}

 The dataset includes 156 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011818-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13932429
title: Dataset and dependencies for the 1D-analysis of sensitivity of ice cloud radiative heating rate

description: This dataset includes all the files (.nc and .nam) needed to reproduce the ecRad radiative transfer calcuations used in the manuscript "Ice crystal complexity leads to weaker ice cloud radiative heating in idealized single-column simulations":



"1-ecrad_config_files.zip": 4 ecRad .nam config files, each for 4 ice optical scheme under test.

"1-ecrad_inputs_files.zip": 9 .nc files, including idealized single columns following ecRad input format. One input file for test 1 (cloud altitude/temperature), 2a (Geometrical Depth with fixed cloud top temeprature) and 2b (Geometrical Depth with fixed cloud bottom temeprature). Three files for each temperature level in test 3 (Ice water path) and test 4 (Effective radius).

"2-ecrad_outputs_files.zip": 30 output .nc files retrieved after running ecRad radiative transfer calculation. 4 different ice optical schemes are used for each input file described in point 2, excepting test 4, which consider only 2 schemes under test.

"3-crh_matrices.zip": 5 .nc files with the CRH tables to produce the figures included in the manuscript. One file per each test proposed.

"tropical_profile_ellingson_250m.txt": tropical climatology profiles used to build input files.


Last update: 2025-04-24
DOI: 10.5281/zenodo.13932430
title: Dataset and dependencies for the 1D-analysis of sensitivity of ice cloud radiative heating rate

description: This dataset includes all the files (.nc and .nam) needed to reproduce the ecRad radiative transfer calcuations used in the manuscript "Ice crystal complexity leads to weaker ice cloud radiative heating in idealized single-column simulations":



"1-ecrad_config_files.zip": 4 ecRad .nam config files, each for 4 ice optical scheme under test.

"1-ecrad_inputs_files.zip": 9 .nc files, including idealized single columns following ecRad input format. One input file for test 1 (cloud altitude/temperature), 2a (Geometrical Depth with fixed cloud top temeprature) and 2b (Geometrical Depth with fixed cloud bottom temeprature). Three files for each temperature level in test 3 (Ice water path) and test 4 (Effective radius).

"2-ecrad_outputs_files.zip": 30 output .nc files retrieved after running ecRad radiative transfer calculation. 4 different ice optical schemes are used for each input file described in point 2, excepting test 4, which consider only 2 schemes under test.

"3-crh_matrices.zip": 5 .nc files with the CRH tables to produce the figures included in the manuscript. One file per each test proposed.

"tropical_profile_ellingson_250m.txt": tropical climatology profiles used to build input files.


Last update: 2025-04-24
DOI: 10.15468/dl.ejjp99
title: Occurrence Download

description: A dataset containing 42491 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elaeocarpus L.",
 "HasCoordinate is true",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 42491 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003770-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28887539
title: Morphological data for Argentine Stem Weevil populations in New Zealand

description: This study looked into the biogeography of Argentine stem weevil invasion of southern New Zealand and two offshore islands where island populations and New Zealand mainland populations morphology and genomes were compared.
DOI: 10.6084/m9.figshare.28887539.v1
title: Morphological data for Argentine Stem Weevil populations in New Zealand

description: This study looked into the biogeography of Argentine stem weevil invasion of southern New Zealand and two offshore islands where island populations and New Zealand mainland populations morphology and genomes were compared.
DOI: 10.15468/dl.72tust
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygonum aviculare",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024482-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17672335
title: Supplementary material for ' The microbiota and survival of bacterial pathogens during a milk kefir fermentation and subsequent storage' by Maughan et al.

description: Datasets containing; the OTU and reads from 16S and ITS nanopore sequencing, the Shannon and Chao1 diversities of kefir and kefir grain samples. Images includes the rarefaction curves of the 16S and ITS. The Top 20 genera and species for both bacteria and fungi for each sample are included.
DOI: 10.5281/zenodo.17672336
title: Supplementary material for ' The microbiota and survival of bacterial pathogens during a milk kefir fermentation and subsequent storage' by Maughan et al.

description: Datasets containing; the OTU and reads from 16S and ITS nanopore sequencing, the Shannon and Chao1 diversities of kefir and kefir grain samples. Images includes the rarefaction curves of the 16S and ITS. The Top 20 genera and species for both bacteria and fungi for each sample are included.
DOI: 10.15468/dl.3fpu9m
title: Occurrence Download

description: A dataset containing 7630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((18.94773 45.64963,18.95793 45.65676,18.96306 45.65964,18.96608 45.66576,18.96443 45.67228,18.95833 45.67687,18.94283 45.68367,18.92994 45.68897,18.91865 45.69544,18.9073 45.70758,18.90157 45.72135,18.8985 45.72499,18.9086 45.72728,18.92476 45.72517,18.93259 45.7227,18.93991 45.72235,18.94799 45.72622,18.95373 45.72936,18.95717 45.73436,18.95659 45.73976,18.95029 45.74196,18.9417 45.74236,18.93625 45.74476,18.93998 45.75116,18.92439 45.74995,18.90765 45.74519,18.89648 45.74908,18.88702 45.73048,18.87986 45.70456,18.88572 45.68886,18.86976 45.6834,18.85826 45.66794,18.86001 45.64708,18.84926 45.63162,18.81588 45.62072,18.80522 45.60789,18.79726 45.59785,18.79182 45.57985,18.78274 45.5629,18.76889 45.55598,18.75702 45.55252,18.76235 45.54587,18.77298 45.54323,18.81037 45.55108,18.82719 45.54868,18.86411 45.55256,18.87692 45.55288,18.8943 45.54616,18.91691 45.54551,18.92971 45.54423,18.91416 45.55576,18.89358 45.56121,18.88809 45.57081,18.89129 45.58234,18.9105 45.59194,18.9137 45.59994,18.90593 45.61146,18.90913 45.62042,18.92176 45.62715,18.93331 45.63225,18.93848 45.64032,18.94773 45.64963))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 7630 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002312-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgsvfy
title: Occurrence Download

description: A dataset containing 132602 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Prochilodus magdalenae"
 ]
}

 The dataset includes 132602 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002293-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48328/tudatalib-2013
title: Functional Renormalization Group meets Computational Fluid Dynamics: RG flows in a multi-dimensional field space

description: Functional Renormalization Group meets Computational Fluid Dynamics: RG flows in a multi-dimensional field space
DOI: 10.15468/dl.kfgd4y
title: Occurrence Download

description: A dataset containing 49891 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.78308 11.22037,-73.55231 11.22037,-73.55231 11.32251,-73.78308 11.32251,-73.78308 11.22037))",
 "PublishingCountry is Colombia"
 ]
}

 The dataset includes 49891 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002313-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48328/tudatalib-2015
title: Optimization and stabilization of functional renormalization group flows

description: Optimization and stabilization of functional renormalization group flows
DOI: 10.48328/tudatalib-2014
title: Lattice Monte Carlo meets the lattice functional renormalization group: A quantitative comparison

description: Lattice Monte Carlo meets the lattice functional renormalization group: A quantitative comparison
DOI: 10.15468/dl.424rsq
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "PublishingOrg is 2cd829bb-b713-433d-99cf-64bef11e5b3e",
 "TaxonKey is Chelonia mydas"
 ]
}

 The dataset includes 191 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002314-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tp6pd8
title: Occurrence Download

description: A dataset containing 112035 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Coordinate uncertainty meters invalid, Country derived from coordinates, Continent derived from coordinates, Recorded date mismatch, The scientific name ID was not found in the checklist, The taxon ID was not found in the checklist, Individual count invalid, Occurrence status unparsable, Occurrence status inferred from individual count)",
 "OccurrenceStatus is Present",
 "TaxonKey is Acer rubrum",
 "Year 1950-2025"
 ]
}

 The dataset includes 112035 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002282-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m4ux54
title: Occurrence Download

description: A dataset containing 294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-104.91398 17.83407,-53.76399 17.83407,-53.76399 51.51624,-104.91398 51.51624,-104.91398 17.83407))",
 "TaxonKey is Pueraria lobata"
 ]
}

 The dataset includes 294 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002316-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14629527
title: Novice-Friendly Guided Teleportation for Exploring Knowledge Spaces in Virtual Reality (Study Data)

description: Data files of the technical evaluation and user study presented in the paper "Novice-Friendly Guided Teleportation for Exploring Knowledge Spaces in Virtual Reality"
DOI: 10.5281/zenodo.17672306
title: Novice-Friendly Guided Teleportation for Exploring Knowledge Spaces in Virtual Reality (Study Data)

description: Data files of the technical evaluation and user study presented in the paper "Novice-Friendly Guided Teleportation for Exploring Knowledge Spaces in Virtual Reality"
DOI: 10.15468/dl.vvka6p
title: Occurrence Download

description: A dataset containing 64796 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "DatasetKey is one of (Hoverfly records verified via iRecord, Rotherham Biological Records Centre - Non-sensitive Records from all taxonomic groups, Bee and hoverfly species data from the UK Pollinator Monitoring Scheme, All taxa records for Leicestershire and Rutland, Welsh Invertebrate Database (WID), Record species dataset covering Cheshire, Halton, Warrington & Wirral, Natural History Museum (London) Collection Specimens, Observation.org, Nature data from around the World, SEWBReC Diptera - True Flies (South East Wales), iNaturalist Research-grade Observations)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (1467829d-0779-43eb-9fab-0e27e48b6457, 1c6f1c68-6ba9-4e36-97c7-8a58315d8698, ee45975b-3d89-42b5-ac7a-c03f47b6dcb4, 25318ae9-d1de-456f-baa2-4515ff1f33b1, 19456090-b49a-11d8-abeb-b8a03c50a862, c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f, 48f02f0c-5287-4b0a-bdf1-cee8f9665285, 28eb1a3f-1c15-4a95-931a-4af90ecb574d, 0c392aa0-a452-4254-be5c-e49dd60e9b02, 62433b33-28b2-4f70-8b75-b183f54aabaa)",
 "TaxonKey is Episyrphus balteatus"
 ]
}

 The dataset includes 64796 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002307-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17672347
title: IBM Quantum K-Tomography Data for Universal Information Hydrodynamics

description: Raw and processed data for paper: 10.5281/zenodo.17651781
DOI: 10.5281/zenodo.17672346
title: IBM Quantum K-Tomography Data for Universal Information Hydrodynamics

description: Raw and processed data for paper: 10.5281/zenodo.17651781
DOI: 10.5281/zenodo.17672330
title: Database of water level and discharge variation of the Rhine river

description: The DETECT Discharge dataset provides river discharge and associated hydrological parameters derived from nadir- and swath-satellite altimetry data. This document outlines the structure, variables, and attributes of the NetCDF file to ensure proper understanding and utilization by users. These files accompany the manuscript titled "Water level and discharge variation from modern-era satellite altimetry".
DOI: 10.5281/zenodo.17672329
title: Database of water level and discharge variation of the Rhine river

description: The DETECT Discharge dataset provides river discharge and associated hydrological parameters derived from nadir- and swath-satellite altimetry data. This document outlines the structure, variables, and attributes of the NetCDF file to ensure proper understanding and utilization by users. These files accompany the manuscript titled "Water level and discharge variation from modern-era satellite altimetry".