cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2fhjdw
title: CCDC 2249248: Experimental Crystal Structure Determination

description: Related Article: Ernst Anders, Michaela Piffl, Helmar Görls
|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fhjfx
title: CCDC 2249249: Experimental Crystal Structure Determination

description: Related Article: Ernst Anders, Michaela Piffl, Helmar Görls
|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fhjgy
title: CCDC 2249250: Experimental Crystal Structure Determination

description: Related Article: Ernst Anders, Michaela Piffl, Helmar Görls
|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fhjhz
title: CCDC 2249251: Experimental Crystal Structure Determination

description: Related Article: Ernst Anders, Michaela Piffl, Helmar Görls
|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fhjj0
title: CCDC 2249252: Experimental Crystal Structure Determination

description: Related Article: Ernst Anders, R. Wagner, Helmar Görls
|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fhjk1
title: CCDC 2249253: Experimental Crystal Structure Determination

description: Related Article: Ernst Anders, R. Wagner, Helmar Görls
|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10572576
title: riboseq-flow results for OTTR ribo-seq data in human cells from Ferguson et al., 2023

description: Riboseq-flow: A streamlined, reliable pipeline for ribosome profiling data analysis and quality control

Underlying data for Use case I example from the manuscript introducing riboseq-flow, a Nextflow DSL2 ribo-seq analysis pipeline, including all the outputs produced by analysing ribo-seq data in human 293T cells from Ferguson et al., 2023 with riboseq-flow. 

Raw FASTQ files processed are available from the NCBI Short Read Archive under accession no. SRP419250. Below are the SRA accession codes, experiments and descriptions: 





SAMN32928155: nuclease digestion of biological replicate 1 of 293T cell lysate with RNase I (hR1 - SRX19188681).




SAMN32928156: nuclease digestion of biological replicate 2 of 293T cell lysate with RNase I (hR2 - SRX19188682).




SAMN32928153: Nuclease digestion of biological replicate 1 of 293T cell lysate with P1 nuclease (hP1 -SRX19188679).




SAMN32928154: nuclease digestion of biological replicate 2 of 293T cell lysate with P1 nuclease (hP2 - SRX19188680).



Raw FASTQ files were downloaded with nf-core/fetchngs v.1.10.1 using download_fastq.sh.

After download, they were analysed with riboseq-flow v1.1.1 (10.5281/zenodo.10558537) using run_riboseq.sh.



results.zip: results produced by riboseq-flow

Ribo-seq_multiqc_report.html: MultiQC report summarising read and mapping statistics, and ribo-seq quality control metrics.
DOI: 10.5281/zenodo.10572575
title: riboseq-flow results for OTTR ribo-seq data in human cells from Ferguson et al., 2023

description: Riboseq-flow: A streamlined, reliable pipeline for ribosome profiling data analysis and quality control

Underlying data for Use case I example from the manuscript introducing riboseq-flow, a Nextflow DSL2 ribo-seq analysis pipeline, including all the outputs produced by analysing ribo-seq data in human 293T cells from Ferguson et al., 2023 with riboseq-flow. 

Raw FASTQ files processed are available from the NCBI Short Read Archive under accession no. SRP419250. Below are the SRA accession codes, experiments and descriptions: 





SAMN32928155: nuclease digestion of biological replicate 1 of 293T cell lysate with RNase I (hR1 - SRX19188681).




SAMN32928156: nuclease digestion of biological replicate 2 of 293T cell lysate with RNase I (hR2 - SRX19188682).




SAMN32928153: Nuclease digestion of biological replicate 1 of 293T cell lysate with P1 nuclease (hP1 -SRX19188679).




SAMN32928154: nuclease digestion of biological replicate 2 of 293T cell lysate with P1 nuclease (hP2 - SRX19188680).



Raw FASTQ files were downloaded with nf-core/fetchngs v.1.10.1 using download_fastq.sh.

After download, they were analysed with riboseq-flow v1.1.1 (10.5281/zenodo.10558537) using run_riboseq.sh.



results.zip: results produced by riboseq-flow

Ribo-seq_multiqc_report.html: MultiQC report summarising read and mapping statistics, and ribo-seq quality control metrics.
DOI: 10.5281/zenodo.10573242
title: riboseq-flow results for ribo-seq data in human and mouse brain from Wang et al., 2020

description: Riboseq-flow: A streamlined, reliable pipeline for ribosome profiling data analysis and quality control

Extended data for Use case II example from the manuscript introducing riboseq-flow, a Nextflow DSL2 ribo-seq analysis pipeline, including all the outputs produced by analysing ribo-seq data in human and mouse brain from Wang et al., 2020 with riboseq-flow. 

Raw FASTQ files are available from ArrayExpress under accession E-MTAB-7247. Below are the accession codes and assay names for the ribo-seq samples used:





ERR2812346: human_brain_ribo_1




ERR2812347: human_brain_ribo_2




ERR2812348: human_brain_ribo_3




ERR2812382: mouse_brain_ribo_1




ERR2812383: mouse_brain_ribo_2




ERR2812384: mouse_brain_ribo_3



Raw FASTQ files were downloaded with nf-core/fetchngs v.1.10.1 using download_fastq.sh.

After download, they were analysed with riboseq-flow v1.1.1 (10.5281/zenodo.10558537) using run_riboseq.sh scripts in each folder for human and mouse, respectively.



human_brain.zip: code to run riboseq-flow and the results produced for human brain data

human_brain_Ribo-seq_multiqc_report.html: MultiQC report summarising read and mapping statistics, and ribo-seq quality control metrics for human brain data

mouse_brain.zip: code to run riboseq-flow and the results produced for mouse brain data

mouse_brain_Ribo-seq_multiqc_report.html: MultiQC report summarising read and mapping statistics, and ribo-seq quality control metrics for mouse brain data
DOI: 10.5281/zenodo.10573243
title: riboseq-flow results for ribo-seq data in human and mouse brain from Wang et al., 2020

description: Riboseq-flow: A streamlined, reliable pipeline for ribosome profiling data analysis and quality control

Extended data for Use case II example from the manuscript introducing riboseq-flow, a Nextflow DSL2 ribo-seq analysis pipeline, including all the outputs produced by analysing ribo-seq data in human and mouse brain from Wang et al., 2020 with riboseq-flow. 

Raw FASTQ files are available from ArrayExpress under accession E-MTAB-7247. Below are the accession codes and assay names for the ribo-seq samples used:





ERR2812346: human_brain_ribo_1




ERR2812347: human_brain_ribo_2




ERR2812348: human_brain_ribo_3




ERR2812382: mouse_brain_ribo_1




ERR2812383: mouse_brain_ribo_2




ERR2812384: mouse_brain_ribo_3



Raw FASTQ files were downloaded with nf-core/fetchngs v.1.10.1 using download_fastq.sh.

After download, they were analysed with riboseq-flow v1.1.1 (10.5281/zenodo.10558537) using run_riboseq.sh scripts in each folder for human and mouse, respectively.



human_brain.zip: code to run riboseq-flow and the results produced for human brain data

human_brain_Ribo-seq_multiqc_report.html: MultiQC report summarising read and mapping statistics, and ribo-seq quality control metrics for human brain data

mouse_brain.zip: code to run riboseq-flow and the results produced for mouse brain data

mouse_brain_Ribo-seq_multiqc_report.html: MultiQC report summarising read and mapping statistics, and ribo-seq quality control metrics for mouse brain data
DOI: 10.5281/zenodo.10573612
title: Raw data
DOI: 10.5281/zenodo.10573613
title: Raw data
DOI: 10.5281/zenodo.7594643
title: Self-Dispersing Silica Fume Nanoparticles: A Valuable Admixture for Ultra High Performance Concrete

description: These are the supporting information for the publication Self-Dispersing Silica Fume Nanoparticles: A Valuable Admixture for Ultra High Performance Concrete
DOI: 10.5281/zenodo.7594644
title: Self-Dispersing Silica Fume Nanoparticles: A Valuable Admixture for Ultra High Performance Concrete

description: These are the supporting information for the publication Self-Dispersing Silica Fume Nanoparticles: A Valuable Admixture for Ultra High Performance Concrete
DOI: 10.5281/zenodo.10148544
title: Thermo-optic epsilon-near-zero effects

description: The data and code used to produce the results in the paper "Thermo-optic epsilon-near-zero effects".
DOI: 10.5281/zenodo.10148545
title: Thermo-optic epsilon-near-zero effects

description: The data and code used to produce the results in the paper "Thermo-optic epsilon-near-zero effects".
DOI: 10.3886/e194323v1
title: The Presence and Perception of Ankyloglossia on Instagram

description: This study aimed to assess the representation of ankyloglossia (commonly known as tongue tie) on Instagram. Researchers collected over 43,000 Instagram posts related to ankyloglossia from April 2012 to March 2022, with 30,133 posts individually reviewed. They observed a significant increase in both the volume of ankyloglossia-related posts and their engagement in recent years.<br>The study found that ankyloglossia has a growing and diverse presence on social media, reflecting authors' efforts to gain viewership and engagement. This mirrors its increased clinical visibility. Importantly, the study emphasized the need for healthcare professionals to monitor online discussions as unverified information and fearmongering related to healthcare can be prevalent.<br>In summary, this research highlights the expanding influence of social media on discussions about ankyloglossia and underscores the importance of healthcare professionals staying informed and countering misinformation in these online spaces.
DOI: 10.6084/m9.figshare.25002131
title: Water Quality Monitoring Dataset (Ireland)

description: This study utilizes water quality data from <b>Cork Harbour, Moy Killala, and 15 other coastal locations in Ireland</b>. The Environmental Protection Agency (EPA) of Ireland manages and evaluates this dataset as part of their monitoring program. The extracted data comprises 445,125 entries from Cork Harbour, 722,532 entries from Moy Killala, and 15 other randomly selected locations, all stored in .csv format. Upon merging these disparate .csv files, the dataset expanded to 1,276,654 entries. Following a pivot operation on <b>11 parameters</b> (<b>Alkalinity-total (as CaCO3), Ammonia-Total (as N), BOD - 5 days (Total), Chloride, Conductivity @25°C, Dissolved Oxygen, ortho-phosphate (as P) - unspecified, pH, Temperature, Total Hardness (as CaCO3), True Colour</b>), the dataset was reduced to <b>29,159 rows</b>. The selection of parameters was based on their availability across the entire dataset and aimed at encompassing fundamental measurements of water quality.This repository has two csv files:Water Quality Monitoring Dataset_ Ireland.csv - with Raw Water Quality DataWQI Results on Dataset - Which has the calculated Water Quallity Indices (CCME, WAWQI, Horton, SRDD, Brown) results of water quality
DOI: 10.6084/m9.figshare.25002131.v4
title: Water Quality Monitoring Dataset (Ireland)

description: This study utilizes water quality data from <b>Cork Harbour, Moy Killala, and 15 other coastal locations in Ireland</b>. The Environmental Protection Agency (EPA) of Ireland manages and evaluates this dataset as part of their monitoring program. The extracted data comprises 445,125 entries from Cork Harbour, 722,532 entries from Moy Killala, and 15 other randomly selected locations, all stored in .csv format. Upon merging these disparate .csv files, the dataset expanded to 1,276,654 entries. Following a pivot operation on <b>11 parameters</b> (<b>Alkalinity-total (as CaCO3), Ammonia-Total (as N), BOD - 5 days (Total), Chloride, Conductivity @25°C, Dissolved Oxygen, ortho-phosphate (as P) - unspecified, pH, Temperature, Total Hardness (as CaCO3), True Colour</b>), the dataset was reduced to <b>29,159 rows</b>. The selection of parameters was based on their availability across the entire dataset and aimed at encompassing fundamental measurements of water quality.This repository has two csv files:Water Quality Monitoring Dataset_ Ireland.csv - with Raw Water Quality DataWQI Results on Dataset - Which has the calculated Water Quallity Indices (CCME, WAWQI, Horton, SRDD, Brown) results of water quality
DOI: 10.3886/e191561v1
title: Data and code for: Why Didn't the College Premium Rise Everywhere? Employment Protection and On-the-Job Investment in Skills

description: Why has the college wage premium risen rapidly in the United States since the 1980s, but not in European economies such as Germany? We argue that differences in employment protection can account for much of the gap. We develop a model in which firms and workers make relationship-specific investments in skill accumulation. The incentive to invest is stronger when employment protection creates an expectation of long-lasting matches. We argue that changes in the economic environment have reduced relationship-specific investment for less-educated workers in the United States, but not for better-protected workers in Germany.
DOI: 10.3886/e191561v2
title: Data and code for: Why Didn't the College Premium Rise Everywhere? Employment Protection and On-the-Job Investment in Skills

description: Why has the college wage premium risen rapidly in the United States since the 1980s, but not in European economies such as Germany? We argue that differences in employment protection can account for much of the gap. We develop a model in which firms and workers make relationship-specific investments in skill accumulation. The incentive to invest is stronger when employment protection creates an expectation of long-lasting matches. We argue that changes in the economic environment have reduced relationship-specific investment for less-educated workers in the United States, but not for better-protected workers in Germany.
DOI: 10.6084/m9.figshare.25077941
title: Data from CEEBL Survey 2024

description: The study covers the building of the courses utilizing a new pedagogical framework (collaborative engagement experience-based learning). This represents survey results of three online classes utilizing this new methodology.
DOI: 10.6084/m9.figshare.25077941.v1
title: Data from CEEBL Survey 2024

description: The study covers the building of the courses utilizing a new pedagogical framework (collaborative engagement experience-based learning). This represents survey results of three online classes utilizing this new methodology.
DOI: 10.5066/p9gl21vq
title: Eggshell Thickness in 5 Songbird Species

description: Eggshell thickness was measured at the egg equator and sharp pole for 5 songbird species. Each egg has thickness measurements at two locations on the egg and the corresponding egg length, egg width, egg volume, relative incubation age, egg identification, and nest identification.

These data support the following publication:
Schacter, C.R., Peterson, S.H., Hartman, C.A., Herzog, M.P., and Ackerman, J.T., 2024. Eggshell thickness and egg morphometrics in five songbird species from the Central Valley, California. Journal of Field Ornithology, 95(1), p.3. https://doi.org/10.5751/JFO-00410-950103.
DOI: 10.5281/zenodo.10557913
title: A Comprehensive Dataset on Biomechanics and Motor Control During Human Walking with Discrete Mechanical Perturbations

description: This data set contains raw data from gait analysis experiments of perturbed level ground walking for 10 participants. The normal walking speed for all participants was 1.2 m/s; perturbations occurred on the participants' right side; perturbations involved the treadmill belt speed increasing to 1.95 m/s at a rate of 15 m/s^2. The raw data contains force plate, marker, EMG, and IMU data.
DOI: 10.5281/zenodo.8284069
title: A Comprehensive Dataset on Biomechanics and Motor Control During Human Walking with Discrete Mechanical Perturbations

description: This data set contains raw data from gait analysis experiments of perturbed level ground walking for 10 participants. The normal walking speed for all participants was 1.2 m/s; perturbations occurred on the participants' right side; perturbations involved the treadmill belt speed increasing to 1.95 m/s at a rate of 15 m/s^2. The raw data contains force plate, marker, EMG, and IMU data.
DOI: 10.5281/zenodo.8284070
title: A Comprehensive Dataset on Biomechanics and Motor Control During Human Walking with Discrete Mechanical Perturbations

description: This data set contains raw data from gait analysis experiments of perturbed level ground walking for 10 participants. The normal walking speed for all participants was 1.2 m/s; perturbations occurred on the participants' right side; perturbations involved the treadmill belt speed increasing to 1.95 m/s at a rate of 15 m/s^2. The raw data contains force plate, marker, EMG, and IMU data.
DOI: 10.5281/zenodo.10460451
title: SARS CoV 2 Evolution Manuscript Processed Files
DOI: 10.5281/zenodo.10460450
title: SARS CoV 2 Evolution Manuscript Processed Files and Code
DOI: 10.5281/zenodo.10573672
title: SARS CoV 2 Evolution Manuscript Processed Files and Code
DOI: 10.5281/zenodo.10573703
title: SARS CoV 2 Evolution Manuscript Processed Files and Code
DOI: 10.5519/qd.6pza78bb
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (60 records)
DOI: 10.5281/zenodo.7898114
title: CPTAC - first test

description: This is data used by the python `cptac` package. This data is complete; however, it will likely be re-uploaded from the sponsor's account.
DOI: 10.5281/zenodo.7938548
title: CPTAC - first test

description: This is data used by the python `cptac` package. This data is complete; however, it will likely be re-uploaded from the sponsor's account.
DOI: 10.5281/zenodo.7948865
title: CPTAC - first test

description: This is data used by the python `cptac` package. This data is complete; however, it will likely be re-uploaded from the sponsor's account.
DOI: 10.5281/zenodo.7951865
title: CPTAC - first test

description: This is data used by the python `cptac` package. This data is complete; however, it will likely be re-uploaded from the sponsor's account.
DOI: 10.5281/zenodo.7964546
title: CPTAC - first test

description: This is data used by the python `cptac` package. This data is complete; however, it will likely be re-uploaded from the sponsor's account.
DOI: 10.5281/zenodo.7897499
title: CPTAC - first test

description: This is data used by the python `cptac` package. This data is complete; however, it will likely be re-uploaded from the sponsor's account.
DOI: 10.5281/zenodo.7949286
title: CPTAC - first test

description: This is data used by the python `cptac` package. This data is complete; however, it will likely be re-uploaded from the sponsor's account.
DOI: 10.5281/zenodo.7949324
title: CPTAC - first test

description: This is data used by the python `cptac` package. This data is complete; however, it will likely be re-uploaded from the sponsor's account.
DOI: 10.5281/zenodo.7960693
title: CPTAC - first test

description: This is data used by the python `cptac` package. This data is complete; however, it will likely be re-uploaded from the sponsor's account.
DOI: 10.6084/m9.figshare.25077938
title: ASas

description: test
DOI: 10.6084/m9.figshare.25077938.v2
title: ASas

description: test
DOI: 10.6084/m9.figshare.25077938.v1
title: readme.docx

description: This Online Appendix provides all the data collected and used to implement and evaluate RECOVER, a novel conversational requirements engineering approach that automatically extracts system requirements from stakeholders' conversations.
DOI: 10.5517/ccdc.csd.cc2fhjm3
title: CCDC 2249255: Experimental Crystal Structure Determination

description: Related Article: Ernst Anders, Martin Schulz, Helmar Görls
|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fhjr7
title: CCDC 2249259: Experimental Crystal Structure Determination

description: Related Article: Ernst Anders, Martin Schulz, Helmar Görls
|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fhjs8
title: CCDC 2249260: Experimental Crystal Structure Determination

description: Related Article: Ernst Anders, Martin Schulz, Helmar Görls
|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fhpyl
title: CCDC 2249420: Experimental Crystal Structure Determination

description: Related Article: Ernst Anders, Diana Hampe, Helmar Görls|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.