cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/hk6pkyc9st.1
title: Data for: Thermoelectric energy harvesting for nuclear spent fuel sensing and monitoring

description: S1: MCNP input file for gamma heating calculation S2: MCNP input file for the neutron heating calculation S3: Gamma heating result S4: Fin optimization S5: Temperature and flow environment information obtained for CFD simulation S6: Using oil to simulate the helium S7: Experimental result
DOI: 10.17632/s867rx2n7t.1
title: Data for: Effects of oral zinc supplementation on patients with noise-induced hearing loss associated tinnitus: A clinical trial

description: This study enrolled patients who visited our ENT out-patient department with the primary complaint of tinnitus more than 6 months. A full medical history assessment was performed, and each patient underwent an otoscopic examination, a basic audiologic evaluation. A full medical history assessment was performed, and each patient completed the NIHL questionnaire (Supplementary S1), audiogram, tympanogram, speech discrimination test, distortion product otoacoustic emissions (DPOAE) testing, pitch and loudness match of the tinnitus, Tinnitus Handicap Inventory (THI) and serum zinc level analyses. All tests were repeated after 2 months of treatment with zinc gluconate (Zinga 78 mg, 10 mg elemental zinc), two tablets twice per day (40 mg per day).
DOI: 10.5061/dryad.11t5s30/13
title: R script: Transplant experiment

description: Analysis of cumulative fitness and associated reproductive isolation indices with bootstrap confidence intervals in crosses within the Silene dioica and S. latifolia as well as their first- and second-generation hybrids a four-year transplant experiment at three sites of each species (data from Favre et al. 2017, New Phytologist 213, 1487-1499).
DOI: 10.5061/dryad.11t5s30/14
title: R script: Cross fertility and pollen competition

description: Analysis of seed set after pollination within and between the campions Silene dioica (L.) Clairv. and S. latifolia Poiret,  as well as hybrid production after mixed pollination (pollen competition) together with associated reproductive isolation indices with bootstrap confidence intervals.
DOI: 10.5061/dryad.27js55v/1
title: COI alignment

description: Alignment file for mtDNA COI sequences.
DOI: 10.5061/dryad.27js55v/2
title: Environmental_PC_axis1

description: Principal component axis 1 for all environmental layers used in niche comparisons.
DOI: 10.5061/dryad.27js55v/3
title: Environmental_PC_axis2

description: Principal component axis 2 of all environmental layers used in niche comparisons.
DOI: 10.5061/dryad.27js55v/4
title: Locality_points

description: Locality points for Prionurus laticlavius and P. punctatus prior to niche modeling. Duplicates were filtered out in the modeling script.
DOI: 10.5061/dryad.27js55v/5
title: Concatenated UCE alignment for phylogenetic approach in study

description: UCE alignment file for phylogenetic analysis in RAxML. This is a 70% complete alignment file.
DOI: 10.5061/dryad.27js55v/6
title: Complete SNP file after all filtering

description: This VCF file contains all of the SNPs for P. laticlavius and P. punctatus after all quality and maf filtering (P. biafraensis outgrip not included in this file). Datasets for the manuscript used a single randomly chosen SNP for each UCE locus taken from this file.
DOI: 10.5061/dryad.2j151bd/1
title: Arthropod eDNA Illumina Nextseq raw data

description: This contains the raw Illumina Nextseq sequencing files for the study
DOI: 10.5061/dryad.2vd01gr/14
title: Passerines per locus alignments gbtrimmed unfiltered

description: Per locus alignments of UCE sequences trimmed with Gblocks, no minimum number of taxa per locus.
DOI: 10.5061/dryad.310pf05/1
title: buffalo SNPchip data

description: SNP data used in the LD analysis for purebred and crossbred buffalo populations. SNP chip data are in binary PLINK format.
DOI: 10.5061/dryad.35q1p98/1
title: NeuroZika study, Lannuzel et al.

description: Supplementary figure S1 and supplementary Tables S1-5
DOI: 10.5061/dryad.39pt227/1
title: Data for honey bee foraging activity, colony strength and pollination in covered vs uncovered kiwifruit orchards
DOI: 10.5061/dryad.416nn63/1
title: Data from: Inclusive fitness benefits mitigate costs of cuckoldry to socially paired males
DOI: 10.5061/dryad.445m9j4/1
title: Eucalyptus_genotypes_040518

description: Eucalyptus regnans and Eucalyptus obliqua genotypes
DOI: 10.5061/dryad.445m9j4/2
title: Chromosome, site and concatenated locus names

description: This file contains the Chromosome/scaffold, site #, and concatenated ChromoSite (called "locus") names of all 49622 loci
DOI: 10.5061/dryad.46mm022/1
title: Input_Main_Data

description: Data file that includes one row per individual female bird included in the paper.
DOI: 10.5061/dryad.5f87k5v/1
title: Tosi et al_Survival dataset

description: Survival dataset of Tosi et al. 2019
DOI: 10.5061/dryad.5f87k5v/2
title: Tosi et al_Abnormal behaviour dataset

description: Abnormal behaviour dataset of Tosi et al. 2019
DOI: 10.5061/dryad.5f87k5v/3
title: Tosi et al_Weight dataset

description: Weight dataset of Tosi et al. 2019
DOI: 10.5061/dryad.63p3r08/1
title: C (Control) raw RNA-Seq BAM file

description: C/C’ pre-B cells sorted from control mice. This is the BAM file containing the unprocessed, raw reads for the control sample.  The data is provided in BAM format for convenience. MD5: 1db0c4591f24b1e9d4b21b75d33df614
DOI: 10.5061/dryad.63p3r08/2
title: W (Tungsten) raw RNA-Seq BAM file

description: C/C’ pre-B cells sorted from 15 ppm tungsten-exposed mice. This is the BAM file containing the unprocessed, raw reads for the sample that was exposed to Tungsten.  The data is provided in BAM format for convenience. MD5: aa45a303ffea757c2649592df91015ac
DOI: 10.5061/dryad.6g8qr82/1
title: Bee averages for buzz parameters

description: This data file provides the individual bee averages for the various buzz parameters we measured. Please see the README text for more information.
DOI: 10.5061/dryad.6g8qr82/2
title: Individual flight and floral vibration measurements

description: This data file provides the individual buzz measurements for each floral and flight vibration. Please see the README text for more information.
DOI: 10.5061/dryad.6mn67g0/13
title: Stand-characteristics

description: Characteristics of the 35 stands sampled along the lower White River and its delta-backwater in South Dakota. A README file is provided on the first worksheet.
DOI: 10.5061/dryad.6mn67g0/14
title: Tree-ring-age-data

description: Stand location, species, diameter, and age of each tree cored along the lower White River and on the White River delta-backwater in South Dakota. A README file is provided on the first worksheet.
DOI: 10.5061/dryad.6mn67g0/15
title: README-Methods-for-vegetation-data-summarization-analysis

description: A description of the methods used to summarize and analyze vegetation composition and structure.
DOI: 10.5061/dryad.952vb31/1
title: File S2 - MrBayes input file

description: MrBayes input file for the phylogenetic inference
DOI: 10.5061/dryad.952vb31/2
title: File S3 - MrBayes input file with constraint

description: MrBayes input file for the phylogenetic inference with a monophyletic constraint
DOI: 10.5061/dryad.952vb31/3
title: Molecular Matrix Pseudostigmatinae

description: Molecular matrix used for phylogenetic inference
DOI: 10.5061/dryad.952vb31/4
title: Molecular Matrix Pseudostigmatinae for BEAST

description: Molecular matrix used for dating including partitioning information
DOI: 10.5061/dryad.952vb31/5
title: File S1 - Matrix of morphological characters

description: Matrix used for the morphological phylogeny inference
DOI: 10.5061/dryad.952vb31/6
title: BEAST XML file

description: BEAST XML file used for the best analysis based on MLE comparison and including 2 uncorrelated lognormal clocks and a birth death Tree model
DOI: 10.5061/dryad.952vb31/7
title: BEAST tree file

description: Tree obtained in TreeAnnotator after removing the burn-in fraction and based on the best BEAST analysis (2 UCL + BD)
DOI: 10.5061/dryad.b01m4dr/1
title: Strawberry controls

description: Strawberry mass data for the hand cross-pollinated, open-pollinated, and bagged treatment flowers.
DOI: 10.5061/dryad.b01m4dr/2
title: Net pollen deposition

description: This dataset containins the net pollen deposition measurements for 29 bee species in sequences of visits to strawberry flowers.
DOI: 10.5061/dryad.b01m4dr/3
title: Pollen and strawberry yield by species richness

description: This dataset contains the measurements of pollen deposition and strawberry mass for the bee species richness experiment.
DOI: 10.5061/dryad.b01m4dr/4
title: Pollen and strawberry yield by bee visit frequency

description: This dataset contains the measurements of pollen deposition and strawberry mass for the bee abundance (visit frequency) experiments.
DOI: 10.5061/dryad.b01m4dr/5
title: Total pollen and strawberry yield by bee genera

description: This dataset contains the measurements of pollen deposition and strawberry mass by bee genera across all experiments (Species richness and bee abundance).
DOI: 10.5061/dryad.fd3nq57/1
title: Fish paternity, testes and body mass data

description: Paternity data were collected from the literature. Testes and body mass data were collected from the literature, field sampling and personal communications with authors. Citations are listed in the "readme.txt" file. Full details of sources can be found in the online supplementary material (Table S1).
DOI: 10.5061/dryad.k57430s.1/10.1
title: Aldaetal_SystBio_SupplMat

description: Supplementary Tables S1-S4, and Supplementary Figures S1-S16.
DOI: 10.5061/dryad.k57430s.1/4.1
title: gymno_full_dataset_min75_complete

description: Individual UCE loci alignments that are common to at least 75% of taxa in the full dataset of Gymnotiformes (966 loci, 47 taxa). Codes for individual names in README.
DOI: 10.5061/dryad.k57430s.1/5.1
title: gymno_reduced_dataset_min75_complete

description: Individual UCE loci alignments that are common to at least 75% of taxa in the reduced dataset of Gymnotiformes (1472 loci, 11 taxa). Name codes in README.txt.
DOI: 10.5061/dryad.k57430s.1/6.1
title: gymno_reduced_dataset_100_complete

description: Individual UCE loci alignments that are common to 100% of taxa in the reduced dataset of Gymnotiformes (368 loci, 11 taxa). Codes for individual names in README.
DOI: 10.5061/dryad.k57430s.1/7.1
title: gymno_full_dataset_min75_concatenated.nex

description: Concatenated matrix of UCE loci in common to at least 75% of taxa in the Gymnotiformes full dataset. Code names in README.txt.
DOI: 10.5061/dryad.k57430s.1/8.1
title: gymno_reduced_dataset_min75_concatenated

description: Concatenated matrix of UCE loci in common to at least 75% of taxa in the Gymnotiformes reduced dataset. Code names in README.txt.
DOI: 10.5061/dryad.k57430s.1/9.1
title: gymno_reduced_dataset_100_concatenated

description: Concatenated matrix of UCE loci in common to at least 100% of taxa in the Gymnotiformes reduced dataset. Code names in README.txt.
DOI: 10.5061/dryad.m799h3r/4
title: Information for 44 invertebrate species

description: Input data of R analysis for invertebrate species used in this study
DOI: 10.5061/dryad.m799h3r/5
title: Information for 34 non-parasite species

description: Input data of R analysis for 34 non-parasite species used in this study
DOI: 10.5061/dryad.m799h3r/6
title: Size of Panther families for each non-parasite species

description: Size of 7,446 Panther families for each non-parasite species including invasive and non-invasive species
DOI: 10.5061/dryad.m799h3r/7
title: Rank of Panther family size for each non-parasite species

description: Rank of Panther family size for each non-parasite species including invasive and non-invasive species
DOI: 10.5061/dryad.n7n170m/1
title: Root microbiome phenotypes

description: This tar-gz file contains phenotypes related to alpha-diversity (species richness) and beta-diversity (modeled using PCA). In the case of richness, we estimated species richness in the bacterial, fungal, and combined (bacterial and fungal) communities. In the paper, we also introduced the phenotype 'bacterial preference', which measures whether an accession's roots form a better habitat for either bacteria or fungi (or diversity within these communities; the estimates are in the  phenotype file: slant.1.tn2.ranef_diff_exps.txt). The phenotype files for PCA are also included.
DOI: 10.5061/dryad.n7n170m/2
title: Arabidopsis thaliana root microbiome, GWAS results

description: Results from GWAS of species richness (the folder gwas_alpha) and beta diversity (modeled using PCA; the folder is gwas_pca). The tar gz file includes 'reports' (e.g. the top SNPs after GWAS) and image files (manhattan plots). The Methods section of the paper describes the procedure(s) used in GWAS. For more information about the phenotypes, please see the description for the phenotypes.tgz file.
DOI: 10.5061/dryad.tj3gd75/1
title: trees
DOI: 10.5061/dryad.tj3gd75/2
title: alignments
DOI: 10.5061/dryad.tj3gd75/3
title: recovery
DOI: 10.5061/dryad.tj3gd75/4
title: baits
DOI: 10.5061/dryad.vc01dp6/1
title: CO2_equilbration_data

description: Data to determine e-folding time of NPE(t). Columns include the time, the CO2 concentration, and the plant #.
DOI: 10.5061/dryad.vc01dp6/2
title: CO2_exchange_continuous_data

description: Continuous measurements of CO2 exchange over 8-9 hours. Treatment includes NPE measurements with acetylene (Treatment = "C2H2") and without (Treatment = "control"). Columns include time, apparent photosynthesis, NPE, respiration, plant #, and treatment. Data displayed in Fig. S6.
DOI: 10.5061/dryad.vc01dp6/3
title: Fig3_code

description: R code to determine how the uncertainty in Vmax(t) and the detection limit changes as a function of ethylene and acetylene. Simulations are plotted in Fig. 3.
DOI: 10.5061/dryad.vc01dp6/4
title: FigS2_code

description: R code to determine how the uncertainty in Vmax(t) and the detection limit changes as a function of ethylene at 10% acetylene. Simulations are plotted in Fig. S2.
DOI: 10.5061/dryad.vc01dp6/5
title: FigS3_code

description: R code to determine how the uncertainty in Vmax(t) and the detection limit changes as a function of keff and sigma keff. Simulations are plotted in Fig. S3.
DOI: 10.5061/dryad.vc01dp6/6
title: FigS4_code

description: R code to determine how the uncertainty in Vmax(t) and the detection limit changes as a function of Km and sigma Km. Simulations are plotted in Fig. S4.
DOI: 10.5061/dryad.vc01dp6/7
title: keff_data

description: Data for calculating the leak rate coefficient (keff) for our setup. Columns include the ethylene concentration, keff, and sigma keff.
DOI: 10.5061/dryad.vc01dp6/8
title: Km_data

description: Data used to determine the Michaelis-Menten half saturation constant (Km) for how ethylene production changes as a function of acetylene. Columns include species identity, individual plant, acetylene concentration, uncertainty in the acetylene concentration, the change in ethylene over time, and the uncertainty in the change in ethylene over time. Species-specific Km values are displayed in Table 1.
DOI: 10.17632/5hb8g4j488.1
title: Data for: 3345946

description: POLICY ISSUES – CREDIT, INFRASTRUCTURE SUPPORT, RISK MANAGEMENT AND MARKETING FOR DOUBLING FARMERS INCOME
DOI: 10.17632/66sfcvncsw.1
title: Data for: Reconstructing body weight of the Australian dingo (Canis dingo) from measurements of the hard palate.

description: This is the data used in all analysis for the submitted paper
DOI: 10.17632/8f6sjyy64r.1
title: Data for: The origin, migration and accumulation of the Ordovician gas in the Tazhong III region, Tarim Basin, NW China

description: 1. Ordovician gas compositions and C isotope ratios of wells in the Tazhong III region, Tarim Basin. 2. Diamantane index of Ordovician condensate oils of wells in the Tazhong III region, Tarim Basin.
DOI: 10.17632/kfkm769z2g.1
title: Data for: 3345917

description: IT'S ALL ABOUT FACTORS AFFECTING AGRICULTURAL MARKETING
DOI: 10.17632/p9tmzckdpt.1
title: Data for: Model Applicability for Prediction of Residual Soil Apparent Cohesion

description: This files contains the detailed Triaxial test data on the unsaturated residual soil samples
DOI: 10.17632/t4786fjfm3.1
title: Data for: Changing Dimensions of Quality Human Resource in Indian Organisations – a Management View

description: CHANGING DIMENSIONS OF QUALITY HUMAN RESOURCE IN INDIAN ORGANISATIONS – A MANAGEMENT VIEW
DOI: 10.5061/dryad.1540502/1
title: Supplementary data file

description: This .xlsx file shows, for each of 156 focal species: A) species traits (conservation status, habitat association, farmland dependency, wintering zone [for migrants], surrogate species [if applicable] and additional notes); B) habitat terms in the RSPB habitat-specific density model; C) predicted 2050 relative population size in each scenario; D) predicted 2050 conservation status in each scenario.
DOI: 10.5061/dryad.1p1c0fs/1
title: species data of macroinvertebrates in 55 stream sites
DOI: 10.5061/dryad.2ck7120/1
title: alignments.tar

description: Mapping Assisted Multiple Alignment files for in silico primer testing
DOI: 10.5061/dryad.2t547dd/1
title: Scent of death_Ecology and Evolution_all raw Excel data (uploaded 2018-12-28 to Dryad)

description: All data for both experiments in the paper (Experiments 1 and 2).
DOI: 10.5061/dryad.324ch00/1
title: Near-Infrared Spectroscopy for metabolite quantification and species identification

description: Raw NIR spectra for triglyceride quantification and species identification
DOI: 10.5061/dryad.3680n0c/2
title: Plumage complexity metrics

description: Mean interpatch distances from spectral data and mechanistic complexity scores calculated from RevBayes analyses
DOI: 10.5061/dryad.3680n0c/3
title: Carotenoid scores
DOI: 10.5061/dryad.3680n0c/4
title: Eumelanin scores
DOI: 10.5061/dryad.3680n0c/5
title: Phaeomelanin scores
DOI: 10.5061/dryad.3680n0c/6
title: Structural barbules scores
DOI: 10.5061/dryad.46mm022/2
title: Input_Avg_Daily_Visits

description: Data file that includes the average number of different visit metrics across all days recorded for each nest box in the study. The 'unitbox' column joins to the main data file.
DOI: 10.5061/dryad.46mm022/3
title: Input_Male_Detect_Dates

description: Data file that includes first and last detection dates for males in the study based on RFID records.
DOI: 10.5061/dryad.46mm022/4
title: Input_ties_by_row

description: Data file that includes one row for each unique visit identified to a different box in the study with information about each visit.
DOI: 10.5061/dryad.46mm022/5
title: Input_Visits_By_Day

description: Data file with each row being one day of observation per nest box with information about social activity for each day.
DOI: 10.5061/dryad.46mm022/6
title: Input_AllVisitsMerged

description: Full raw RFID records that includes both visits to other nests and trips to focal birds own nests throughout the breeding season. Used to identify and tabulate the visit pattern data.
DOI: 10.5061/dryad.46mm022/7
title: Code_Make_DailyRFID

description: R script that processes the raw RFID files to make the visit data that is used in the main analyses. This sub-script is called from the main analysis script: 'Code_Color_Abandon.r'
DOI: 10.5061/dryad.46mm022/8
title: Code_Color_Abandon

description: This is the main code used to produce all the analyses and figures presented in the paper and in the supplement. It should be run from a directory containing all of the 'input' data files.
DOI: 10.5061/dryad.4s7m50h/1
title: Field_population_CTmin
DOI: 10.5061/dryad.4s7m50h/2
title: Field_population_CTmax
DOI: 10.5061/dryad.53885k7/1
title: NESTS
DOI: 10.5061/dryad.5f87k5v/4
title: Tosi et al_Bee abnormal behaviours

description: Abnormal behaviours observed in videos recorded during preliminary ecotoxicological trials. The videos highlight and better define the types of common abnormal bee behaviours occurring after oral pesticide consumption in sucrose solution. Further details are available in table S1-S2 of Tosi et al. 2019.
DOI: 10.5061/dryad.6bq1c1r/1
title: Garcia_Allen_Clusella-Trullas_indices_function

description: Code for computing indices of species' vulnerability to warming based on data of available operative environmental temperature (Te) and the species' thermal preference and tolerance. The function returns the values of the Habitat Thermal Quality, Thermal Safety Margin and Hours of Restriction indices as well as Te summary statistics.
DOI: 10.5061/dryad.70f538g/1
title: McAllister_etal_Dryad_Submission.tar

description: See README.
DOI: 10.5061/dryad.8625cv1/1
title: Relationships of impacted ocean ecosystem services to SDGs

description: A matrix of affects of impacted marine ecosystem services across SDG targets. Expert comments and supporting literature are provided in comment boxes corresponding to specific cells. Certainty categories are also indicated for each relationship
DOI: 10.5061/dryad.8nc6384/1
title: Salicaceae meta-analysis data on G, E, and GxE intraspecific variation

description: This data file contains study information and effect sizes from 72 articles on genotype by environment interactions in the Salicaceae. The first tab has README information on each variable within the data (contained within the "meta_data.csv" tab).
DOI: 10.5061/dryad.9f5c711/1
title: Appendix S1

description: Representative photographs of choice experiment arena.
DOI: 10.5061/dryad.9f5c711/2
title: Appendix S2

description: Video of wasp activity, including visiting receptacles, removing achenes, and visiting experimental arena (Appendix S1) and taking flight with achenes.
DOI: 10.5061/dryad.9f5c711/3
title: Appendix S3

description: Raw data for receptacle angle measurements.
DOI: 10.5061/dryad.9f5c711/4
title: Appendix S4

description: Photographs of representative excavated Vespula pennsylvanica nest showing achenes collected by the wasps.
DOI: 10.5061/dryad.9f5c711/5
title: Appendix S5

description: Photographs of Aristolochia fruits and seeds, showing accessory organ of seeds that is attractive to Vespula wasps.
DOI: 10.5061/dryad.9kj4ms0/1
title: SuppFig1-AusichMaoLi

description: Supplemental Figure 1. Color photomicrographs of thin sections of petalocrinids, in crossed-polarized light (scale bar 1.0 mm). (1, 2) Petalocrinus inferior Bather, 1898; OSU 54648; (1) central portion of second brachial plate, (2) distal edge of second brachial plate; (3, 4)
Petalocrinus stenopetalus Mao et al., 2017; OSU 64649, (3) central portion of second brachial
plate, (4) distal edge of second brachial plate; (5, 6) Spirocrinus circularis Mao et al., 2017; OSU
54650, (5) central portion of second brachial plate, (6) distal edge of second brachial plate, arrow indicates boundary between adjoining crystals (see color images and videos in Supplemental Figures).
DOI: 10.5061/dryad.9kj4ms0/2
title: SuppFig2_VideoAusichMaoLi

description: Supplemental Figure 2. Video of central portion of second brachial plate of Petalocrinus
inferior Bather, 1898; OSU 54648; compare with Figure 3A and Supplemental Figure 1A.
DOI: 10.5061/dryad.9kj4ms0/3
title: SuppFig3_VideoAusichMaoLi

description: Supplemental Figure 3. Video of distal portion of second brachial plate of Petalocrinus inferior
Bather, 1898; OSU 54648; compare with Figure 3B and Supplemental Figure 1B.
DOI: 10.5061/dryad.9kj4ms0/4
title: SuppFig4_VideoAusichMaoLi

description: Supplemental Figure 4. Video of central portion of second brachial plate of Petalocrinus
stenopetalus Mao et al., 2017; OSU 64649; compare with Figure 3C and Supplemental Figure
1C.
DOI: 10.5061/dryad.9kj4ms0/5
title: SuppFig5_VideoAusichMaoLi

description: Supplemental Figure 5. Video of distal portion of second brachial plate of Petalocrinus
stenopetalus Mao et al., 2017; OSU 64649; compare with Figure 3D and Supplemental Figure
1D.