cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14500358
title: PRISMA Open database of region- and technology- specific cost of capital

description: This open database of region- and technology-specific cost of capital, developed in the PRISMA project, provides region- and technology-specific cost of capital values for renewable energy technologies and other climate-relevant sectors. These data enhance the fidelity and credibility of energy system and IAM analyses, enabling more nuanced assessments of the trade-offs and synergies involved in the low-carbon energy transition.For more information, we refer the reader to the Readme PDF included in this repository. For questions, please contact Bjarne Steffen or Paul Waidelich.

Please note that the database is embargoed until 1 January 2026 and preliminary access can only be granted for project review purposes.
DOI: 10.5281/zenodo.15690729
title: Raw data for the manuscript: Vertical transport of polystyrene nanoplastics in natural soils under unsaturated conditions : Influence of particle size and texture

description: Data from breakthrough curves and recovered mass to evaluate the effect of particle size and texture on the transport of polystyrene nanoplastics in natural soils under unsaturated conditions

Data from batch experiments to evaluate the sorption of polystyrene nanoplastics(120, 500, 1000 nm) in natural soils P2 and P3 as a function of particle size and organic matter content
DOI: 10.5281/zenodo.15096708
title: Surface sediment geochemistry in the southern Romanian EEZ 2023-2024 (H2020 BRIDGE-BS project)

description: Dataset contains geochemistry data collected along the Mangalia - East transect, in the Romanian southern EEZ (bottom depths between 15 and 1160 m), within the period February 2023 - July 2024. Data were collected during three BRIDGE -BS cruises carried out onboard R/V Mare Nigrum in February 2023 (cruise MN238), June 2023 (cruise MN242), and July 2024 (cruise MN260). Top layer sediment was collected using either a boxcorer (0.1 m2), in February and June 2023, or Van Veen grab sampler (0.125 m2), in July 2024. Sediment samples were further analyzed in the GeoEcoMar lab for major (TOC, CaCO3, Fe) and minor (Mn, Ti) components, trace elements (by X-ray fluorescence), and PAHs (by UPLC, for the July 2024 cruise), as well as  in the NIMRD lab, for PCBs, pesticides (by GC-ECD), and PAHs (by GC-MS, for the February 2023 cruise).
DOI: 10.5281/zenodo.16642111
title: logLIRA: a method for reliable suppression of electrical stimulation artifacts enabling short-latency neural response recovery

description: This dataset provides a semisynthetic benchmark for evaluating methods that detect and remove electrical stimulation artifacts in neural recordings, often referred to as Stimulus Artifact Rejection (SAR) algorithms.

The dataset is organized into a ZIP archive containing the following components:





lookup_table.xlsx: an Excel file mapping each item of the dataset to its corresponding data source, enabling traceability and reproducibility.




basal: a folder containing 2.5-minute chunks of basal neural activity. These segments are randomly selected to meet a target mean firing rate (MFR) and are checked to be free of recording artifacts (e.g., movement).




templates: a library of clustered and averaged stimulation artifacts extracted from single channels belonging to recordings with Activity-Dependent Stimulation (ADS). These templates serve as the basis for generating semisynthetic stimulation artifacts in the benchmarking snippets.




snippets: semisynthetic neural activity snippets that include stimulation artifacts. These are generated by superimposing artifact templates onto basal activity, simulating realistic conditions for stimulation artifact removal.
DOI: 10.5281/zenodo.14795788
title: Local database of 349 pediatric S. aureus genomes

description: A local database of 349 pediatric S. aureus genomes collected in Philadelphia
DOI: 10.5281/zenodo.17379051
title: Origins and breadth of pairwise epistasis in an α-helix of β-lactamase TEM-1, data processing

description: The effect of mutations in a protein may depend on the presence of others—a phenomenon known as epistasis. Epistasis plays a key role in protein evolution and complicates predictions of mutational effects, as effects can be context-dependent. Yet, despite its importance, the mechanistic basis of epistasis remains poorly understood. To better characterize epistasis, we focused on an 11-residue α-helix in TEM-1 β-lactamase and constructed a comprehensive library of over 15,000 double mutants. Fitness and minimum inhibitory concentration assays, two contrasted measure of protein efficiency, revealed consistent widespread epistasis. A non-linear two-state protein stability model in which inactivating, destabilizing, neutral, or stabilizing mutations contribute additively to the stability phenotype, largely explained the data. Most epistatic effects were consequently predictable from single-mutation effects. However, systematic deviations from the model occurred when both mutated residues directly interacted in the 3D structure—a fold conserved across distant TEM-1 homologues. We therefore investigated the predictive power of statistical models trained on distant homologous sequences and found that they could partially recover the observed epistatic interactions. Our results, built on a short structural element of a protein, shed light on multiple determinants of the epistatic landscape that have shaped the evolutionary trajectory of β-lactamase proteins over long timescales.

 

Here are all the files required for preocessing the raw data to the figure and table production.
DOI: 10.5281/zenodo.17278621
title: ZooMS data for "Tracing herding strategies in the Samarkand Oasis: Isotopic and proteomic insights from Kafir Kala (Samarkand, Uzbekistan)"

description: Collagen peptide mass fingerprint dataset (MALDI-TOF, Bruker Microflex). Archaeological ovicaprid samples decribed in the paper Tracing herding strategies in the Samarkand Oasis: Isotopic and proteomic insights from Kafir Kala (Samarkand, Uzbekistan)
DOI: 10.5281/zenodo.14735274
title: Aligned DNA sequence matrix for phylogenetic analyses in the article "A new Epicrionops (Amphibia: Gymnophiona: Rhinatrematidae) species from Ecuador with preliminary taxonomic revision of the genera Epicrionops (Boulenger) and Amazops (Wilkinson)"

description: Aligned DNA sequence matrix for phylogenetic analyses of the article "A new Epicrionops (Amphibia: Gymnophiona: Rhinatrematidae) species from Ecuador with preliminary taxonomic revision of the genera Epicrionops (Boulenger) and Amazops (Wilkinson)"

The matrix is in NEXUS format. Genes are arranged as follows:

tRNAs =  1- 259 1223- 1321 ;

ND1 codonPos1 =  260-1220\3;

ND1 codonPos2 =  261-1221\3;

ND1 codonPos3 =  262-1222\3;

16S = 1322-2888;

12S = 2889-3422;

CO1 codonPos1 =  3424-4813\3;

CO1 codonPos2 =  3425-4811\3;

CO1 codonPos3 =  3423-4812\3;
DOI: 10.60888/epos-gnss-vala00esp
title: GNSS data of VALA00ESP, Valladolid, Spain

description: Permanent GNSS station dataset as RINEX files
DOI: 10.5281/zenodo.15941810
title: Data used in the study "Determination of dynamic physical properties of peat and bark-based alternative casing materials for mushroom cultivation using X-ray Computed Tomography"

description: This is the data used in the manuscript entitled "Determination of dynamic physical properties of peat and bark-based alternative casing materials for mushroom cultivation using X-ray Computed Tomography". Porosity, pore surface area and pore size distribution data are derrived from X-ray CT scan files with extremely large file sizes. Raw scan images in the form of TIFF image stacks will be made available on request at xrayct@ucd.ie or saoirse.tracy@ucd.ie.
DOI: 10.5281/zenodo.17689222
title: Exploring the dietary preferences of limnic supraglacial consumers: the 13C and 15N isotopic food labelling in tardigrades and rotifers from cryoconite holes.

description: Summary table of data for the study "Exploring the dietary preferences of limnic supraglacial consumers: the 13C and 15N isotopic food labelling in tardigrades and rotifers from cryoconite holes" in FWB. The table presents data on supraglacial consumers, rotifers (r) and tardigrades (t) from Forni Glacier and Svenbreen with their abundances and stable isotopic values.
DOI: 10.5281/zenodo.13375982
title: Daily soil N2O emissions from European terrestrial ecosystems estimated by the LPJ-GUESS model (Version 1.2)

description: Daily estimates of soil N2O emissions from European terrestrial ecosystems were simulated using the LPJ-GUESS model from 1990 to 2022. The gridded fluxes are available at a resolution of 0.125° × 0.125° and include aggregated N2O fluxes from natural vegetation, managed forests, pastures, and croplands.
DOI: 10.5281/zenodo.14670660
title: Daily CO2 fluxes from European terrestrial ecosystems estimated by the LPJ-GUESS model (Version 1.2)

description: Daily estimates of CO2 fluxes (gross primary production, heterotrophic respiration, and net biosphere production) from European terrestrial ecosystems were simulated using the LPJ-GUESS model for the period 1990 to 2022. The gridded fluxes are available at a resolution of 0.125° × 0.125° and include aggregated CO2 fluxes from natural vegetation, managed forests, pastures, and croplands.
DOI: 10.5281/zenodo.16939914
title: Data for "Magnetic Field Dependence of Critical Fluctuations in CeCu$_{5.8}$Ag$_{0.2}$"

description:  

Data used for “Magnetic Field Dependence of Critical Fluctuations in CeCu$_{5.8}$Ag$_{0.2}$”. The study was conducted on a well characterized single-crystal CeCu$_{5.8}$Ag$_{0.2}$ in the (H, 0, L)-scattering plane. The data presented here were obtained at the cold spectrometer CAMEA at the Paul Scherrer Institute (PSI), Switzerland. A vertical 11 T cryomagnet was used for field applied along the $b$-axis, while an in-plane 1.8 T cryomagnet was used for field along the $c$-axis. In both cases, a dilution insert was used to reach temperatures between 0.05 and 4 K. Reciprocal space maps were recorded with four incoming energies $E_i$ = [4.5, 4.38, 3.5, 3.4] meV and 1 degree sample rotation steps. The field dependence was performed at a temperature $T$ = 50 mK and field $\mu_0 H$ = [0, 2, 4, 6, 8] T. Temperature dependence scans were recorded with a field $\mu_0 H$ = 8 T along the $b$-axis and 1.8 T along the $c$-axis and temperatures $T$ = [0.175, 0.35, 0.75, 1.58, 3.18] K and [0.1, 0.25, 0.5, 1, 2.3, 4] K respectively. Background maps were performed at the same field as the foreground and at a temperature $T$ = 45 or 50 K. Analysis of the data was performed with the MJOLNIR software.
DOI: 10.5281/zenodo.15458468
title: Dataset for Vertebrates are not less abundant or stable at geographic or climate edges

description: This dataset contains all data and code to regenerate figures and results for "Vertebrates are not less abundant or stable at geographic or climate edges".
DOI: 10.5281/zenodo.15680006
title: Research data associated to article "Within-field overwintering contributes to arthropod assemblages in arable fields irrespective of tillage intenisty"

description: Data associated to the article "Within-field overwintering contributes to arthropod assemblages in arable fields irrespective of tillage intenisty", published in AGEE.
DOI: 10.5281/zenodo.16090067
title: Dataset_Eceiza_2022

description: Datos de la publicación  Mikel Vicente Eceiza, Miriam Gil-Monreal, María Barco-Antoñanzas, Ana Zabalza, Mercedes Royuela,The moderate oxidative stress induced by glyphosate is not detected in Amaranthus palmeri plants overexpressing EPSPS,Journal of Plant Physiology, Volume 274, 2022,153720,https://doi.org/10.1016/j.jplph.2022.153720--
DOI: 10.5281/zenodo.17802647
title: A Fear Dictator Who Is Spinning? Conceptualizing Authoritarian Reponses to Digital Uptake through the Case Study of Information Control in Belarus (Annex VI)

description: This is a part of the supplementary materials package or Annex VI (descriptive statistics and sources) for the paper "A Fear Dictator Who Is Spinning? Conceptualizing Authoritarian Responses to Digital Uptake through the Case Study of Information Control in Belarus".
DOI: 10.5281/zenodo.16995490
title: Root data for cross-biome root presence analyses and associated R scripts

description: Data used for analyses described in manuscript and associated scripts for analyses.
DOI: 10.5281/zenodo.10732722
title: scRNA-seq for article: Giardia intestinalis reshapes mucosal immunity toward a type-2 response that attenuates inflammatory bowel-like diseases - filtered and annotated data

description: Single-cell RNA-seq dataset from sorted IL-10+, TCRb+, CD4+ mouse small intestine lamina propria cells in naive or Giardia intestinalis-infected animals at 7 d.p.i. Data analyses and results are described in manuscript: "Giardia intestinalis reshapes mucosal immunity toward a Type 2 response that attenuates inflammatory bowel-like diseases". Data are Seurat objects in RDS format. Filtered-out potential doublets, low quality cells and dying cells (excluded cells with <800 genes detected, cells with >5000 genes detected and cells with mitochondrial gene expression > 10%). Data normalization, scaling and integration performed using Seurat v 4.4.0.

Full filtered dataset in the "alineGiardia.combined_v4.rds" file.

T cells of interest only in the "T.seurat.rds" file.
DOI: 10.5281/zenodo.10911979
title: Traversing European Coastlines (TREC) particle count and meterological data from Tara Schooner (Mar - Nov 2023)

description: Dataset contains continuous particle counts from GRIMM EDM264 Pro particle counter with an attached meterological station that were collected from the Tara Schooner during the first year of the TREC expedition (2023). Date includes date, time, particle counts from PM1 to PM10 or size fraction from 0.25 µm to 35 µm. Contextual environmental variables include, temp., relative humiditiy, precipitation, Pressure, Wind velocity and direction.
DOI: 10.60888/epos-gnss-toro00esp
title: GNSS data of TORO00ESP, Toro, Spain

description: Permanent GNSS station dataset as RINEX files
DOI: 10.15468/dl.cv9jhc
title: Occurrence Download

description: A dataset containing 2679 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyommatus eros",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 2679 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070086-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60888/epos-gnss-stvd00esp
title: GNSS data of STVD00ESP, Santibanez de Vidriales, Spain

description: Permanent GNSS station dataset as RINEX files
DOI: 10.60888/epos-gnss-sori00esp
title: GNSS data of SORI00ESP, Soria, Spain

description: Permanent GNSS station dataset as RINEX files
DOI: 10.6084/m9.figshare.26715215
title: Source Data for Figures from Small-Angle X-ray Scattering Analysis of Poly(Amic Acid) Dispersed in a Liquid Matrix to Understand the Size Control of Polyimide Nanoparticles

description: SourceData.xlsx
DOI: 10.6084/m9.figshare.26715215.v1
title: Source Data for Figures from Small-Angle X-ray Scattering Analysis of Poly(Amic Acid) Dispersed in a Liquid Matrix to Understand the Size Control of Polyimide Nanoparticles

description: SourceData.xlsx
DOI: 10.48597/pnr5-ptwc
title: Measurement of OC/EC at Payerne

description: Measurement of OC/EC at Payerne
DOI: 10.6084/m9.figshare.26709778
title: Table S4 from Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage <i>Drosophila melanogaster</i> embryos

description: GO biological process functional enrichment of transcripts in the six modules significantly correlated with temperature (WGCNA). GO categories were determined to be significantly enriched based on overrepresentation analysis (Fisher's exact test, FDR &lt; 0.01).
DOI: 10.6084/m9.figshare.26709778.v1
title: Table S4 from Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage <i>Drosophila melanogaster</i> embryos

description: GO biological process functional enrichment of transcripts in the six modules significantly correlated with temperature (WGCNA). GO categories were determined to be significantly enriched based on overrepresentation analysis (Fisher's exact test, FDR &lt; 0.01).
DOI: 10.6084/m9.figshare.26709784
title: Supplementary Material from Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage <i>Drosophila melanogaster</i> embryos

description: Raw_survival_data.xlsx
DOI: 10.6084/m9.figshare.26709784.v1
title: Supplementary Material from Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage <i>Drosophila melanogaster</i> embryos

description: Raw_survival_data.xlsx
DOI: 10.6084/m9.figshare.26709787
title: Table S2 from Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage <i>Drosophila melanogaster</i> embryos

description: Relative expression of genes involved in the oxidative stress response (GO:0006979) and their functional roles.
DOI: 10.6084/m9.figshare.26709787.v1
title: Table S2 from Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage <i>Drosophila melanogaster</i> embryos

description: Relative expression of genes involved in the oxidative stress response (GO:0006979) and their functional roles.
DOI: 10.6084/m9.figshare.26709796.v1
title: Table S1 from Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage <i>Drosophila melanogaster</i> embryos

description: GO biological process functional enrichment of transcripts significantly differentially expressed by the main effects of region or temperature (DEseq2, LRT, FDR &lt; 0.05). GO categories were determined to be significantly enriched based on overrepresentation analysis (Fisher's exact test, FDR &lt; 0.01).
DOI: 10.6084/m9.figshare.26709790
title: Supplementary Material from Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage <i>Drosophila melanogaster</i> embryos

description: Embryo_Transcriptomics_R_Code_2024_v3.R
DOI: 10.6084/m9.figshare.26709790.v1
title: Supplementary Material from Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage <i>Drosophila melanogaster</i> embryos

description: Embryo_Transcriptomics_R_Code_2024_v3.R
DOI: 10.6084/m9.figshare.26709796
title: Table S1 from Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage <i>Drosophila melanogaster</i> embryos

description: GO biological process functional enrichment of transcripts significantly differentially expressed by the main effects of region or temperature (DEseq2, LRT, FDR &lt; 0.05). GO categories were determined to be significantly enriched based on overrepresentation analysis (Fisher's exact test, FDR &lt; 0.01).
DOI: 10.6084/m9.figshare.26709802
title: Table S3 from Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage <i>Drosophila melanogaster</i> embryos

description: GO biological process functional enrichment of transcripts in the six modules significantly correlated with LT50 (WGCNA). GO categories were determined to be significantly enriched based on overrepresentation analysis (Fisher's exact test, FDR &lt; 0.01).
DOI: 10.6084/m9.figshare.26709802.v1
title: Table S3 from Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage <i>Drosophila melanogaster</i> embryos

description: GO biological process functional enrichment of transcripts in the six modules significantly correlated with LT50 (WGCNA). GO categories were determined to be significantly enriched based on overrepresentation analysis (Fisher's exact test, FDR &lt; 0.01).
DOI: 10.60686/t-fsd3692
title: FSD3692 Deliberative Mini-Public on the Satakunta 2050 Regional Plan
DOI: 10.60686/t-fsd3674
title: FSD3674 Elderly Care and Services 2015
DOI: 10.15468/dl.v8dtg3
title: Occurrence Download

description: A dataset containing 1516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.2_2",
 "OccurrenceStatus is Present",
 "TaxonKey is Egretta caerulea (Linnaeus, 1758)"
 ]
}

 The dataset includes 1516 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076103-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vh57ts
title: Occurrence Download

description: A dataset containing 1190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Mimagoniates microlepis (Steindachner, 1877)"
 ]
}

 The dataset includes 1190 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076102-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24916767
title: Moderate confirmation bias enhances collective learning in groups of reinforcement-learning agents

description: This dataset contains all the data needed to generate the manuscript's plots, including supplementary figures.Supporting material is also provided.
DOI: 10.6084/m9.figshare.24916767.v3
title: Moderate confirmation bias enhances collective learning in groups of reinforcement-learning agents

description: This dataset contains all the data needed to generate the manuscript's plots, including supplementary figures.
DOI: 10.15468/dl.52mvrp
title: Occurrence Download

description: A dataset containing 24953 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Sao Tome and Principe",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 24953 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076105-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edapv8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron ngawchangense M.N.Philipson & Philipson"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076106-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26789983
title: cell_gene_expression.csv

description: gene dataset
DOI: 10.6084/m9.figshare.26789983.v1
title: cell_gene_expression.csv

description: gene dataset
DOI: 10.15468/dl.s5b5bs
title: Occurrence Download

description: A dataset listing the 341 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-41.03753 -20.39897,-41.00495 -20.39702,-40.99905 -20.38305,-41.00252 -20.35998,-41.02297 -20.34763,-41.04758 -20.35413,-41.07219 -20.36485,-41.05937 -20.38825,-41.03753 -20.39897))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 341 records were derived from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076097-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.