cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11343965.v1
title: Cod.xls

description: Catch information for cod that were collected in Kandalaksha Bay, White Sea, Russia, in 2014. fish were caught with identical monofilament gill nets of different mesh sizes with a 0.5 hanging ratio. The length of the nets was 30 m and the height of the nets was 1.5 m. The duration of the fishing operation was 12 h (from sunset to dawn) and the number of fishing operations was 11 for cod. Cod were caught with gill nets of 20, 25 and 30 mm mesh size. The different mesh size nets were set together and were fished concurrently. Nets were set in the afternoon and retrieved the following morning.
DOI: 10.6084/m9.figshare.11343785
title: Detecting Synonymous Relationships by Shared Data-driven Definitions

description: Datasets that can be used together with the Code in: https://github.com/JanKalo/RuleAlign
DOI: 10.6084/m9.figshare.11343785.v1
title: Detecting Synonymous Relationships by Shared Data-driven Definitions

description: Datasets that can be used together with the Code in: https://github.com/JanKalo/RuleAlign
DOI: 10.25380/iastate.11343020
title: Molecular Dynamic Simulation data of compensatory mutations in Bruton's Tyrosine Kinase

description: The research aims to find compensatory mutations that rescue Bruton’s tyrosine kinase (Btk) activity in the presence of severe X-linked agammaglobulinemia (XLA) causing mutation in the kinase domain. The data set includes the molecular dynamic simulation trajectories of native, with R641H deleterious mutation and with the R641H-K420R compensatory mutations structures separately. The trajectories describe the conformational dynamics changes and show that the compensatory mutation site was able to rescue the Btk linker-kinase domain dynamics in the presence of R641H.<br>This MD simulation data set supports the research article: "Identifying a Compensating Mutation to Rescue Function in Bruton’s Tyrosine Kinase with an XLA Mutant".<br>The multiple sequence alignment data for calculating high order dependence is also included in the data set (PF07714.fa). The links for all the software and scripts used in the research are available in the README file.
DOI: 10.25380/iastate.11343020.v1
title: Molecular Dynamic Simulation data of compensatory mutations in Bruton's Tyrosine Kinase

description: The research aims to find compensatory mutations that rescue Bruton’s tyrosine kinase (Btk) activity in the presence of severe X-linked agammaglobulinemia (XLA) causing mutation in the kinase domain. The data set includes the molecular dynamic simulation trajectories of native, with R641H deleterious mutation and with the R641H-K420R compensatory mutations structures separately. The trajectories describe the conformational dynamics changes and show that the compensatory mutation site was able to rescue the Btk linker-kinase domain dynamics in the presence of R641H.<br>This MD simulation data set supports the research article: "Identifying a Compensating Mutation to Rescue Function in Bruton’s Tyrosine Kinase with an XLA Mutant".<br>The multiple sequence alignment data for calculating high order dependence is also included in the data set (PF07714.fa). The links for all the software and scripts used in the research are available in the README file.
DOI: 10.6084/m9.figshare.11342720
title: The utility of Covariance Assumption Test – ANOVA approach and relative error of Cell Number Estimation by simulation

description: Numeric processing on analysis and diagnostic dataset of relationship between spectrum light and cell particles of <i>S cerevisiae</i> was performed to analyze the covariance on regression assumption and relative error of cell number estimation to a model. The one model should be chosen and the relationship of that i.e. the model for standard curve on turbidimetry. Under Windows 10 OS the application with using DosBox 0.74 were used for Biology system. This document consists of utility of covariance assumption test, simulation, and the computation proof by Excel in Windows OS.
DOI: 10.6084/m9.figshare.11342642
title: Dataset of Anorectal Manometry for hemorrhoidal patients in Vietnam

description: Dataset of Anorectal Manometry for hemorrhoidal patients in Vietnam. This dataset includes the data and the codebook.
DOI: 10.6084/m9.figshare.11342630
title: THE DATA COLLECTION OF Saccharomyces cerevisiae TURBIDITY MODELING IN LIQUID MEDIA

description: Numeric processing on analysis and diagnostic dataset of relationship between light spectrum and cell particles of <i>S cerevisiae</i> was performed to result models. The one model should be chosen and the relationship of that consists of the model for standard curve on turbidimetry and the cell that were growing in liquid nutrients medium. The numeric processing used the statistical application from International Business Machine (IBM) v.16.0, Excel under Windows 10 OS, R v3.6.1, and the statistic principles were used for Biology system. This document consists of Tables, sketch (electronic) and image (camera) figures.
DOI: 10.6084/m9.figshare.11342435
title: Post-exercise respirometry underestimates maximum metabolic rate in juvenile salmon

description: Four csv files:<br>1. MMR_estimation_data_R2method<br>Data used to make most of the figures and for modeling (statistics). Provides metadata for each fish and an associated MMR estimated based on the steepest slope for the decline in DO with an R2 &gt; 0.95 (see manuscript). <br><br><br>2. MMR_estimation_data_fullslope<br>The same as #1 (above) but where MMR is calculated based on the slope of the full sealed cycle, or up to 8 min in the case of the static respirometers. <br><br>3. MMR_estimation_allslopes_static_20191209<br>The slopes and R2 values for all linear regressions run on the raw dissolved oxygen data for every fish for which we estimated MMR in static respirometers. <br><br><br>4. MMR_estimation_allslopes_tunnel_20191209<br>The slopes and R2 values for all linear regressions run on the raw dissolved oxygen data for every fish for which we estimated MMR in swim tunnel. <br><br>5. README that provides variable definitions for each file<br>
DOI: 10.6084/m9.figshare.11342435.v1
title: Post-exercise respirometry underestimates maximum metabolic rate in juvenile salmon

description: Four csv files:<br>1. MMR_estimation_data_R2method<br>Data used to make most of the figures and for modeling (statistics). Provides metadata for each fish and an associated MMR estimated based on the steepest slope for the decline in DO with an R2 &gt; 0.95 (see manuscript). <br><br><br>2. MMR_estimation_data_fullslope<br>The same as #1 (above) but where MMR is calculated based on the slope of the full sealed cycle, or up to 8 min in the case of the static respirometers. <br><br>3. MMR_estimation_allslopes_static_20191209<br>The slopes and R2 values for all linear regressions run on the raw dissolved oxygen data for every fish for which we estimated MMR in static respirometers. <br><br><br>4. MMR_estimation_allslopes_tunnel_20191209<br>The slopes and R2 values for all linear regressions run on the raw dissolved oxygen data for every fish for which we estimated MMR in swim tunnel. <br><br>5. README that provides variable definitions for each file<br>
DOI: 10.6084/m9.figshare.11342426
title: dropcell_image_data_set

description: Dropcell technology, REALISM project, BIOASTER 2019.<br>Image data set of a monolayer array of droplets, acquired over 6 fields of view (10X magnification), in 5 different imaging channels including brightfield and fluorescence, and 8 time points.
DOI: 10.6084/m9.figshare.11342267
title: Search Operators

description: Figshare supports a predefined set of operators and specific characters for advanced in field searches and these have been outlined in the table. <br><br>
DOI: 10.6084/m9.figshare.11342267.v1
title: Search Operators

description: Figshare supports a predefined set of operators and specific characters for advanced in field searches and these have been outlined in the table. <br><br>
DOI: 10.6084/m9.figshare.11342168
title: Danio_rerio_Tg_spon1b_GFP_24hpf_frontal.tif

description: Raw dataset of light sheet fluorescence microscopy images from a transgenic <i>Tg(spon1b:GFP)</i> zebrafish brain at 24 hpf. Planes were acquired from a frontal view.
DOI: 10.6084/m9.figshare.11342171
title: Danio_rerio_Tg_spon1b_GFP_48hpf_ventral_transmitted.tif

description: Raw dataset of transmitted images from a transgenic <i>Tg(spon1b:GFP)</i> zebrafish brain at 48 hpf. Planes were acquired from a ventral view and are used as anatomical reference for the fluorescence dataset Danio_rerio_Tg_spon1b_GFP_48hpf_ventral.tif
DOI: 10.6084/m9.figshare.11342168.v1
title: Danio_rerio_Tg_spon1b_GFP_24hpf_frontal.tif

description: Raw dataset of light sheet fluorescence microscopy images from a transgenic <i>Tg(spon1b:GFP)</i> zebrafish brain at 24 hpf. Planes were acquired from a frontal view.
DOI: 10.6084/m9.figshare.11342267.v2
title: Search Operators

description: Figshare supports a predefined set of operators and specific characters for advanced in field searches and these have been outlined in the table. <br><br>
DOI: 10.6084/m9.figshare.11342150
title: Danio_rerio_Tg_spon1b_GFP_96hpf_dorsal.tif

description: Raw dataset of light sheet fluorescence microscopy images from a transgenic Tg(spon1b:GFP) zebrafish brain at 96 hpf. Planes were acquired from a dorsal view.
DOI: 10.6084/m9.figshare.11342156
title: Danio_rerio_Tg_spon1b_GFP_48hpf_ventral.tif

description: Raw dataset of light sheet fluorescence microscopy images from a transgenic <i>Tg(spon1b:GFP)</i> zebrafish brain at 48 hpf. Planes were acquired from a ventral view.
DOI: 10.6084/m9.figshare.11342159
title: Danio_rerio_Tg_spon1b_GFP_72hpf_dorsal.tif

description: Raw dataset of light sheet fluorescence microscopy images from a transgenic Tg(spon1b:GFP) zebrafish brain at 72 hpf. Planes were acquired from a dorsal view.
DOI: 10.6084/m9.figshare.11342171.v1
title: Danio_rerio_Tg_spon1b_GFP_48hpf_ventral_transmitted.tif

description: Raw dataset of transmitted images from a transgenic <i>Tg(spon1b:GFP)</i> zebrafish brain at 48 hpf. Planes were acquired from a ventral view and are used as anatomical reference for the fluorescence dataset Danio_rerio_Tg_spon1b_GFP_48hpf_ventral.tif
DOI: 10.6084/m9.figshare.11342138
title: Danio_rerio_Tg_spon1b_GFP_48hpf_dorsal.tif

description: Raw dataset of light sheet fluorescence microscopy images from a transgenic <i>Tg(spon1b:GFP)</i> zebrafish brain at 48 hpf. Planes were acquired from a dorsal view.
DOI: 10.6084/m9.figshare.11342144
title: Danio_rerio_Tg_spon1b_GFP_24hpf_frontal_transmitted.tif

description: Raw dataset of transmitted images from a transgenic <i>Tg(spon1b:GFP)</i> zebrafish brain at 24 hpf. Planes were acquired from a frontal view and are used as anatomical reference for the fluorescence dataset Danio_rerio_Tg_spon1b_GFP_24hpf_frontal.tif<br>
DOI: 10.6084/m9.figshare.11342150.v1
title: Danio_rerio_Tg_spon1b_GFP_96hpf_dorsal.tif

description: Raw dataset of light sheet fluorescence microscopy images from a transgenic Tg(spon1b:GFP) zebrafish brain at 96 hpf. Planes were acquired from a dorsal view.
DOI: 10.6084/m9.figshare.11342156.v1
title: Danio_rerio_Tg_spon1b_GFP_48hpf_ventral.tif

description: Raw dataset of light sheet fluorescence microscopy images from a transgenic <i>Tg(spon1b:GFP)</i> zebrafish brain at 48 hpf. Planes were acquired from a ventral view.
DOI: 10.6084/m9.figshare.11342159.v1
title: Danio_rerio_Tg_spon1b_GFP_72hpf_dorsal.tif

description: Raw dataset of light sheet fluorescence microscopy images from a transgenic Tg(spon1b:GFP) zebrafish brain at 72 hpf. Planes were acquired from a dorsal view.
DOI: 10.6084/m9.figshare.11342144.v1
title: Danio_rerio_Tg_spon1b_GFP_24hpf_frontal_transmitted.tif

description: Raw dataset of transmitted images from a transgenic <i>Tg(spon1b:GFP)</i> zebrafish brain at 24 hpf. Planes were acquired from a frontal view and are used as anatomical reference for the fluorescence dataset Danio_rerio_Tg_spon1b_GFP_24hpf_frontal.tif<br>
DOI: 10.6084/m9.figshare.11342138.v1
title: Danio_rerio_Tg_spon1b_GFP_48hpf_dorsal.tif

description: Raw dataset of light sheet fluorescence microscopy images from a transgenic <i>Tg(spon1b:GFP)</i> zebrafish brain at 48 hpf. Planes were acquired from a dorsal view.
DOI: 10.6084/m9.figshare.11342114
title: Initial data

description: Initial data and first intermediary results.<br>
DOI: 10.6084/m9.figshare.11342063
title: Event Logs CSV

description: The event logs in CSV format. The dataset contains both correlated and uncorrelated logs
DOI: 10.6084/m9.figshare.11342024
title: Frontal crash seat belt restraint effectiveness and comfort accessories used by older occupants

description: <b>Objective:</b> Around a quarter of older occupants use some type of comfort or orthopedic aftermarket accessory on the vehicle seat while traveling in a vehicle. The aim of this study was to investigate the effect of comfort accessories on the performance of the seat belt restraint system in a frontal crash in terms of potential injury implications for older occupants. <b>Methods:</b> Eight frontal sled tests (43 km/h, 32 <i>g</i>) were carried out on a deceleration sled fitted with a three-point lap-sash seat belt and a front passenger seat from a common Australian passenger car for each test. A 5<sup>th</sup> percentile Hybrid III anthropometric test device (ATD) was positioned in the seat and measurements were recorded for head center of gravity acceleration, chest acceleration, neck forces and moments and sternal deflection. Tests were carried out in a baseline condition and with seven comfort accessories. Each comfort accessory was inserted between the ATD and vehicle seat as it is intended to be used, with the ATD otherwise positioned as close as possible to the baseline test position. <b>Results:</b> Initial distance between the seat belt anchor and ATD hip was associated with a statistically significant decrease in Head Injury Criterion and increase in sternal deflection. Submarining was related to the ATD torso recline angle and angle of the lap belt from the seat belt anchor. <b>Conclusions:</b> Accessories placed between the seat back and the lumbar region of an occupant have the potential to increase the risk of submarining due to a change in posture and should be avoided if such a change in posture when seated with an accessory is excessive. Sitting on seat cushions resulted in the greatest increase in seat belt anchor to hip distances and hence largest increase in sternal deflection. Given the fragility, frailty and particular importance of chest injuries among older vehicle occupants, further investigation is needed to determine whether these changes in ATD sternal deflection observed with seat cushion use results in injury threshold limits being exceeded and whether pretensioners and load limiters would ameliorate these effects without causing other negative changes in occupant response or kinematics.
DOI: 10.6084/m9.figshare.11342024.v1
title: Frontal crash seat belt restraint effectiveness and comfort accessories used by older occupants

description: <b>Objective:</b> Around a quarter of older occupants use some type of comfort or orthopedic aftermarket accessory on the vehicle seat while traveling in a vehicle. The aim of this study was to investigate the effect of comfort accessories on the performance of the seat belt restraint system in a frontal crash in terms of potential injury implications for older occupants. <b>Methods:</b> Eight frontal sled tests (43 km/h, 32 <i>g</i>) were carried out on a deceleration sled fitted with a three-point lap-sash seat belt and a front passenger seat from a common Australian passenger car for each test. A 5<sup>th</sup> percentile Hybrid III anthropometric test device (ATD) was positioned in the seat and measurements were recorded for head center of gravity acceleration, chest acceleration, neck forces and moments and sternal deflection. Tests were carried out in a baseline condition and with seven comfort accessories. Each comfort accessory was inserted between the ATD and vehicle seat as it is intended to be used, with the ATD otherwise positioned as close as possible to the baseline test position. <b>Results:</b> Initial distance between the seat belt anchor and ATD hip was associated with a statistically significant decrease in Head Injury Criterion and increase in sternal deflection. Submarining was related to the ATD torso recline angle and angle of the lap belt from the seat belt anchor. <b>Conclusions:</b> Accessories placed between the seat back and the lumbar region of an occupant have the potential to increase the risk of submarining due to a change in posture and should be avoided if such a change in posture when seated with an accessory is excessive. Sitting on seat cushions resulted in the greatest increase in seat belt anchor to hip distances and hence largest increase in sternal deflection. Given the fragility, frailty and particular importance of chest injuries among older vehicle occupants, further investigation is needed to determine whether these changes in ATD sternal deflection observed with seat cushion use results in injury threshold limits being exceeded and whether pretensioners and load limiters would ameliorate these effects without causing other negative changes in occupant response or kinematics.
DOI: 10.6084/m9.figshare.11341985
title: Data File

description: HITChip data from Individual and cohort-specific gut microbiota patterns associated with tissue-specific insulin sensitivity in overweight and obese males. See README for details
DOI: 10.6084/m9.figshare.11341958
title: Performance evaluation of sequencing data using Swift Accel-Amplicon CFTR Panel_BAMs

description: We evaluate the performance using Swift Biosciences Accel-Amplicon CFTR Capture Panel with CF-positive DNA samples. We provide the fastq files on seven CFTR-positive samples and one normal control sample (14 samples processed including repeated samples). This method has generated sequencing data with high coverage and near 100% on-target percentage.
DOI: 10.6084/m9.figshare.11341985.v1
title: Data File

description: HITChip data from Individual and cohort-specific gut microbiota patterns associated with tissue-specific insulin sensitivity in overweight and obese males. See README for details
DOI: 10.6084/m9.figshare.11341913
title: Figure 4_ATM pS9181 IF

description: <br>HeLaS2=EVHeLaSg2_30=SMCHD1 KO1HeLaSg3_35=SMCHD1 KO2
DOI: 10.6084/m9.figshare.11341904
title: Figure 3_gH2AX IF-FISH

description: The data included here is used to report the finding that loss of SMCHD1 in shTRF2 depleted HeLa cells affects the tnumber of gH2AX foci at telomere. The data is part of figure 1B and C of the following manuscript https://www.biorxiv.org/content/10.1101/669119v2<br>HeLaS2=EVHeLaSg2_30=SMCHD1 KO1HeLaSg3_35=SMCHD1 KO2<br>
DOI: 10.6084/m9.figshare.11341895
title: Figure 3_ATMpS9181_IF-FISH

description: The data included here is used to report the finding that loss of SMCHD1 in shTRF2 depleted HeLa cells affects the number of ATMpS1981 foci. The data is part of figure 3 of the following manuscript https://www.biorxiv.org/content/10.1101/669119v2
DOI: 10.6084/m9.figshare.11341913.v1
title: Figure 4_ATM pS9181 IF

description: <br>HeLaS2=EVHeLaSg2_30=SMCHD1 KO1HeLaSg3_35=SMCHD1 KO2
DOI: 10.6084/m9.figshare.11341880
title: Proposta de base analítica de dados do Sistema Público de Saúde - DATASUS

description: Base de dados consolidada com informações do ano de 2014 até 2018, para análise de custo por paciente e desenvolvimento de uma estratégia de alocação de recursos, com base nos dados de uma base analítica do Sistema Público de Saúde. Permitindo realizar uma abordagem preventiva sobre políticas de saúde nas pessoas que permitem melhorar o atendimento ao paciente idoso.
DOI: 10.6084/m9.figshare.11341904.v1
title: Figure 3_gH2AX IF-FISH

description: The data included here is used to report the finding that loss of SMCHD1 in shTRF2 depleted HeLa cells affects the tnumber of gH2AX foci at telomere. The data is part of figure 1B and C of the following manuscript https://www.biorxiv.org/content/10.1101/669119v2<br>HeLaS2=EVHeLaSg2_30=SMCHD1 KO1HeLaSg3_35=SMCHD1 KO2<br>
DOI: 10.6084/m9.figshare.11341889

description: HITChip data from Individual and cohort-specific gut microbiota patterns associated with tissue-specific insulin sensitivity in overweight and obese males. See README for details<br>
DOI: 10.6084/m9.figshare.11341895.v1
title: Figure 3_ATMpS9181_IF-FISH

description: The data included here is used to report the finding that loss of SMCHD1 in shTRF2 depleted HeLa cells affects the number of ATMpS1981 foci. The data is part of figure 3 of the following manuscript https://www.biorxiv.org/content/10.1101/669119v2
DOI: 10.6084/m9.figshare.11341865
title: 48hrs and 72hrs dose-percent response data.xlsx

description: <i>Bemisia tabaci</i> populations were collected from greenhouses located in Aydıncık, Kazanlı, Kocahasanlı, Silifke and Sipahili districts in southern Turkey (Mersin province). Three neonicotinoid insecticides—acetamiprid 207g/kg (Mospilan™, Sumi Agro Turkey, Istanbul, Turkey), imidacloprid 350 g L<sup>-1</sup> (Confidor™, Bayer Crop Sciences, Leverkusen, Germany), and thiamethoxam 240 g L<sup>-1</sup> (Actara™, Syngenta, Izmir, Turkey)—and three non-neonicotinoid insecticides—spinetoram 120 g L<sup>-1</sup> (Radiant™, Dow AgroSciences, Istanbul, Turkey), spinosad 480 g L<sup>-1</sup> (Laser™, Dow AgroSciences, Istanbul, Turkey), and sulfoxaflor 50% W/W (Transform™, Dow AgroSciences, Istanbul, Turkey)—were used in the bioassays. Serial dilutions were prepared for each insecticide using distilled water to determine population specific concentrations. A 0.1 g L<sup>-1</sup> Triton X-100 was included in the insecticide concentrations. A total of five to seven concentrations that caused nearly 10% to 90% mortality were determined (IRAC, https:// irac-online.org).The method described by the Insecticide Resistance Action Committee (IRAC) was used to determine the resistance status of whitefly populations (IRAC, https:// irac-online.org). Bean leaf-discs (3cm in diameter) that were cut using a cork-borer from insecticide-free bean plants were immersed in different concentrations of insecticides for 10 sec. The leaf-discs were allowed to dry for 30 min on paper tissues and then were placed (with their abaxial surface up) on thin sterile agar layers (10 g/L) in 6mm Petri dishes. Fifteen <i>B. tabaci</i> adult individuals were transferred to each leaf-disc using a mouth aspirator and confined using a close-fitting ventilated lid. The lids were previously covered with mesh suitable for keeping whiteflies. Subsequently, the test units were transferred to a controlled condition (Nüve® Incubator, 25±2ᵒC, 70±5%RH, and 16L:8D). Test units, which were treated with only distilled water mixed with 0.1 g L-1 Triton X-100, were used as control. Mortality assays for control were conducted independently for each insecticide. Each concentration was replicated 10 times (150 adults for each concentration). Mortality was evaluated after 72 hrs following pesticide treatments using a binocular microscope. Whitefly individuals that were unable to flip themselves up or fly for a prolonged period of time were considered dead (Caballero, Cyman & Schuster, 2013). This data can be used to generate LC50, LC90, LC25 etc values through probit analysis.