cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22361825.v1
title: Regenerative rangeland management farmers in Spain: enthusiastic among a great diversity in farming conditions

description: Regenerative Rangeland Management (RRM) is emerging as one of the most promising approaches to achieving sustainability of animal production at economic, social and environmental levels. The current bottleneck in RRM is a slow adoption rate, as the farmers’ views are still poorly studied and considered. We conducted individual surveys with 33 Spanish RRM farmers that collected multiple variables regarding general characteristics of farms, productive parameters, rangeland management and opinions around perceptions. We performed associative tests in order to detect the most important drivers of economic profitability and personal satisfaction. Among a wide diversity of farms, we found no features or management types associated with higher profitability, but rather a link to the level of intensification and degree of experience. About 93% of the farmers were mostly satisfied with RRM, even though they face difficulties – highlighting bureaucratic ones. To overcome such hurdles, we encourage improving the dialogue between farmers, researchers and institutions. This is the first state-level study on RRM in Spain, and one of the first analyses collecting farmers’ perceptions on this topic.
DOI: 10.5281/zenodo.7829202
title: Data for "An amorphous phase precedes crystallization: unraveling the colloidal synthesis of zirconium oxide nanocrystals."

description: Data underlying the figures in the publication "An amorphous phase precedes crystallization: unraveling the colloidal synthesis of zirconium oxide nanocrystals" published in ACS Nano: https://doi.org/10.1021/acsnano.3c02149 The <em>.pxp</em> documents contain the experimental data of the figures in the manuscript and they can be opened/edited with the software IGOR Pro 8.0 or higher. For Figure 2a-d there are .txt files available.
DOI: 10.5281/zenodo.7829201
title: Data for "An amorphous phase precedes crystallization: unraveling the colloidal synthesis of zirconium oxide nanocrystals."

description: Data underlying the figures in the publication "An amorphous phase precedes crystallization: unraveling the colloidal synthesis of zirconium oxide nanocrystals" published in ACS Nano: https://doi.org/10.1021/acsnano.3c02149 The <em>.pxp</em> documents contain the experimental data of the figures in the manuscript and they can be opened/edited with the software IGOR Pro 8.0 or higher. For Figure 2a-d there are .txt files available.
DOI: 10.35078/svquga
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Caratinga | Município: Caputira

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.6084/m9.figshare.14562003
title: The evolution of seasonal camouflage in white-tailed jackrabbits in response to past and future climates

description: This repository contains copies of custom code and related resources needed to replicate analyses used to investigate the evolution of seasonal camouflage in white-tailed jackrabbits (<i>Lepus townsendii</i>).<br><br><br><b>wtjr_sdm-master.zip </b>(see GitHub for more details)<br>- Zip archive of code and data for SDM analysis, see READMEs within for full description. Includes:- Occurrence records of WTJR used in the SDM modeling- Snow residence time data for modeling current and future phenotypes<br><b>wc0.5.zip</b><br>- Bioclim variables used for species distribution modeling.<br><b>worldclim_projections_2080.zip</b><br>- Future projections of Bioclim variables 2 and 3<br><b>DMNS18807_06042020_pseudohap2.1.fasta.gz and DMNS18807_06042020_pseudohap2.2.fasta.gz</b><br>- Original <i>de novo</i> genome assemblies of the white-tailed jackrabbit genome generated by Supernova. The primary assembly (used for all analyses) is pseudohap2.1 and the alternative assembly is pseudohap2.2 (used only for the BEAST analysis).<br><b>DMNS18807_06042020_pseudohap2.1_OryCun2.0_liftoff_annotation.gff3</b><br>- Liftoff gff3 annotation of the primary white-tailed jackrabbit reference genome. Annotation was obtained from the European Rabbit reference genome (OryCun2.0).<br><b>OryCun2.0_repeats.bed</b><br>-Bed file of repeat regions for OryCun2.0 from Genome Browser <br><b>GenotypeArea_COATCOLOR_WTJR_W1_34SNPs_92INDVS.xlsx</b><br>- Raw genotype data<br><b>spectrophotometry_raw_files.zip</b><br>- Raw reflectance data<br><b>wtjr_camouflage.zip </b>(see GitHub for more details)<br>- Input alignments, control files and output trees with divergence times from BEAST analysis to date the divergence between white and brown haplotypes.- Input alignments, control files and output log files for GPhoCs analysis to estimate demographic parameters of divergence between hare species.- Processed reflectance data.<br>- Formatted genotype data, and other input and output files for association and Fisher exact test analyses .- Simulated expected divergence (d<sub>xy</sub>) between hare species.- Empirical divergence (d<sub>xy</sub>) between hare species within each coat color association region.<br>
DOI: 10.6084/m9.figshare.14562003.v1
title: The evolution of seasonal camouflage in white-tailed jackrabbits in response to past and future climates

description: This repository contains copies of custom code and related resources needed to replicate analyses used to investigate the evolution of seasonal camouflage in white-tailed jackrabbits (<i>Lepus townsendii</i>).<br><br><br><b>wtjr_sdm-master.zip </b>(see GitHub for more details)<br>- Zip archive of code and data for SDM analysis, see READMEs within for full description. Includes:- Occurrence records of WTJR used in the SDM modeling- Snow residence time data for modeling current and future phenotypes<br><b>wc0.5.zip</b><br>- Bioclim variables used for species distribution modeling.<br><b>worldclim_projections_2080.zip</b><br>- Future projections of Bioclim variables 2 and 3<br><b>DMNS18807_06042020_pseudohap2.1.fasta.gz and DMNS18807_06042020_pseudohap2.2.fasta.gz</b><br>- Original <i>de novo</i> genome assemblies of the white-tailed jackrabbit genome generated by Supernova. The primary assembly (used for all analyses) is pseudohap2.1 and the alternative assembly is pseudohap2.2 (used only for the BEAST analysis).<br><b>DMNS18807_06042020_pseudohap2.1_OryCun2.0_liftoff_annotation.gff3</b><br>- Liftoff gff3 annotation of the primary white-tailed jackrabbit reference genome. Annotation was obtained from the European Rabbit reference genome (OryCun2.0).<br><b>OryCun2.0_repeats.bed</b><br>-Bed file of repeat regions for OryCun2.0 from Genome Browser <br><b>GenotypeArea_COATCOLOR_WTJR_W1_34SNPs_92INDVS.xlsx</b><br>- Raw genotype data<br><b>spectrophotometry_raw_files.zip</b><br>- Raw reflectance data<br><b>wtjr_camouflage.zip </b>(see GitHub for more details)<br>- Input alignments, control files and output trees with divergence times from BEAST analysis to date the divergence between white and brown haplotypes.- Input alignments, control files and output log files for GPhoCs analysis to estimate demographic parameters of divergence between hare species.- Processed reflectance data.<br>- Formatted genotype data, and other input and output files for association and Fisher exact test analyses .- Simulated expected divergence (d<sub>xy</sub>) between hare species.- Empirical divergence (d<sub>xy</sub>) between hare species within each coat color association region.<br>
DOI: 10.5281/zenodo.7786455
title: Training patches and prediction codes of deep learning (LANA) model for Landsat 8/9 cloud/shadow mask

description: This dataset includes (i) the image patches dataset and (ii) application/prediction (not training) codes for Landsat 8 cloud and cloud shadow masking used in a paper in review and uploaded here: Hankui Zhang, Dong Luo, David Roy, A learning attention network algorithm (LANA) for accurate Landsat-8 cloud and shadow masking, <em>Remote Sensing of Environment</em> The documentation is in l8_training_data_readme_new.pdf.
DOI: 10.5281/zenodo.7865321
title: Training patches and prediction codes of deep learning (LANA) model for Landsat 8/9 cloud/shadow mask

description: This dataset includes (i) the image patches dataset and (ii) application/prediction (not training) codes for Landsat 8 cloud and cloud shadow masking used in a paper in review and uploaded here: Hankui Zhang, Dong Luo, David Roy, A learning attention network algorithm (LANA) for accurate Landsat-8 cloud and shadow masking, <em>Remote Sensing of Environment</em> The documentation is in l8_training_data_readme_new.pdf.
DOI: 10.6084/m9.figshare.22699303
title: Hypothetical Porous Materials (COF, PPN, Zeolite)

description: Hypothetical porous material structures (COF, PPN, Zeolite) Construct using PORMAKE (https://github.com/Sangwon91/PORMAKE/tree/master/pormake) <br> COF : 0.5M PPN : 0.3M Zeolite : 0.1M
DOI: 10.6084/m9.figshare.22699804
title: Dataset on dual task performance

description: Dataset on dual task performance
DOI: 10.6084/m9.figshare.22699804.v1
title: Dataset on dual task performance

description: Dataset on dual task performance
DOI: 10.17638/datacat.liverpool.ac.uk/2203
title: Recognition and order of multiple sidechains by a porous framework enhances molecular separation

description: Porous materials perform molecular sorting, separation and transformation by interaction between their framework structures and the substrates. Proteins also interact with molecules to effect chemical transformations, but benefit from the precise amino acid sequencing along a common polypeptide backbone to maximise their performance. Design strategies that positionally order sidechains over a defined porous framework to diversify the internal surface chemistry would enhance control of substrate processing. Here we show that different sidechains can be ordered over a common porous scaffold through recognition of their distinct chemistries during synthesis . The sidechains are recognised because each one forces the building unit that defines the backbone of the framework into a different conformation in order to form the same structure . This affords hexane isomer separation performance superior to that of the same framework decorated with only a single sidechain. The separated molecules adopt distinct arrangements within the resulting modified pore geometry, reflecting their more strongly differentiated environments precisely created by the ordered sidechains. The development of framework-forming chemistries that recognise, distinguish and thus order multiple sidechain functionality offers tailoring of the internal surfaces within families of porous materials to direct interactions at the molecular level.
DOI: 10.35077/add-dip
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1025606094

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1025606094', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1025606094', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1025606094', Locations:'FroL' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.5281/zenodo.7854980
title: Peripheral T-cell profiling reveals downregulated exhaustion marker and increased diversity in lymphedema post-lymphatic venous anastomosis

description: In this study, we compared T cell receptor (TCR) repertoire diversity between patients with lymphedema, post-lymphatic venous anastomosis and healthy controls (HCs). TCR diversity was decreased in lymphedema compared with HCs; such TCR skewing was drastically improved in post-LVA.
DOI: 10.5281/zenodo.7854979
title: Peripheral T-cell profiling reveals downregulated exhaustion marker and increased diversity in lymphedema post-lymphatic venous anastomosis

description: In this study, we compared T cell receptor (TCR) repertoire diversity between patients with lymphedema, post-lymphatic venous anastomosis and healthy controls (HCs). TCR diversity was decreased in lymphedema compared with HCs; such TCR skewing was drastically improved in post-LVA.
DOI: 10.5281/zenodo.6025626
title: Data-set of CO2, CH4, N2O dissolved concentrations and ancillary data in surface waters of 24 African lakes.

description: Geo-referenced and timestamped data-set of water temperature, Specific conductivity (SpCond), oxygen saturation level (%O<sub>2</sub>), dissolved methane (CH<sub>4</sub>) concentration, dissolved nitrous oxide (N<sub>2</sub>O) concentration, partial pressure of carbon dioxide (pCO<sub>2</sub>), carbon stable isotope composition of dissolved inorganic carbon (δ<sup>13</sup>C-DIC), dissolved organic carbon (DOC) concentration, chlorophyll-a (Chl-a) concentration, cyanobacteria abundance (CHEMTAX), nitrate (NO<sub>3</sub><sup>-</sup>) and ammonia concentration (NH<sub>4</sub><sup>+</sup>), coloured dissolved organic matter slope ratio (CDOM SR) in surface waters of African 24 lakes (Victoria, Tanganyika, Albert, Kivu, Edward, Mai Ndombe, Tumba, George, Kamohonjo, Alaotra, Ndalaga, Nyamusingere, Kyamwinga, Mbita, Lukulu, Yandja, Mbalukira, Nkugute, Nyamunuka, Kitagata, Mrambi, Kyashanduka, Katinda, Lac Vert).
DOI: 10.5281/zenodo.5167358
title: Data-set of CO2, CH4, N2O dissolved concentrations and ancillary data in surface waters of 24 African lakes.

description: Geo-referenced and timestamped data-set of water temperature, Specific conductivity (SpCond), oxygen saturation level (%O<sub>2</sub>), dissolved methane (CH<sub>4</sub>) concentration, dissolved nitrous oxide (N<sub>2</sub>O) concentration, partial pressure of carbon dioxide (pCO<sub>2</sub>), carbon stable isotope composition of dissolved inorganic carbon (δ<sup>13</sup>C-DIC), dissolved organic carbon (DOC) concentration, chlorophyll-a (Chl-a) concentration, cyanobacteria abundance (CHEMTAX), nitrate (NO<sub>3</sub><sup>-</sup>) and ammonia concentration (NH<sub>4</sub><sup>+</sup>), coloured dissolved organic matter slope ratio (CDOM SR) in surface waters of African 24 lakes (Victoria, Tanganyika, Albert, Kivu, Edward, Mai Ndombe, Tumba, George, Kamohonjo, Alaotra, Ndalaga, Nyamusingere, Kyamwinga, Mbita, Lukulu, Yandja, Mbalukira, Nkugute, Nyamunuka, Kitagata, Mrambi, Kyashanduka, Katinda, Lac Vert).
DOI: 10.21253/dmu.22217050
title: Atlas Think Tank Main Employers

description: This database contains the name and roles of board members, supervisory board members, academic advisory boards, and CEO's of all think tank organizations that are part of the Atlas Network/Atlas Economic Research Foundation between January 2021 and December 2022. The dataset covers each continent under separate sections for individual continent analysis. Columns A to D refer to the names of the individuals. Column E refers to the associated think tank organization Column F refers to the position that they hold Column H and F refer to the main employer <br> There is some missing data where information on main employers was unavailable. All data was collate from each organizations website available to the public at the time of data collection <br>
DOI: 10.35077/add-dog
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1037452707

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1037452707', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1037452707', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1037452707', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.35077/add-dry
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1037461069

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1037461069', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1037461069', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1037461069', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'
DOI: 10.5281/zenodo.1185122
title: Reference-Based Rna-Seq Data Analysis (Training Data)

description: The data provided here are part of a Galaxy Training Network tutorial that analyzes RNA-Seq data from a study published by Brooks <em>et al.</em> 2011 to identify genes and exons that are regulated by Pasilla gene.
DOI: 10.5281/zenodo.290221
title: Reference-Based Rna-Seq Data Analysis (Training Data)

description: <strong>RNA-seq</strong> (<strong>RNA sequencing</strong>) uses high-throughput (HTS) data to reveal the presence and quantity of RNA in a biological sample at a given moment in time. 

In the training available at http://galaxyproject.github.io/RNA-Seq/tutorials/ref_based, we introduce the bioinformatics methods to analyze RNA-seq data using a reference genome. The toy datasets were extracted from the study of Brooks <em>et al.</em> 2011.
DOI: 10.5281/zenodo.4541751
title: Reference-based RNA-seq data analysis (training data)

description: The data provided here are part of a Galaxy Training Network tutorial that analyzes RNA-Seq data from a study published by Brooks <em>et al.</em> 2011 to identify genes and exons that are regulated by Pasilla gene.
DOI: 10.5281/zenodo.6457007
title: Reference-based RNA-seq data analysis (training data)

description: The data provided here are part of a Galaxy Training Network tutorial that analyzes RNA-Seq data from a study published by Brooks <em>et al.</em> 2011 to identify genes and exons that are regulated by Pasilla gene.
DOI: 10.5281/zenodo.773365
title: Reference-based RNA-seq data analysis (training data)

description: The data provided here are part of a Galaxy Training Network tutorial that analyzes RNA-Seq data from a study published by Brooks <em>et al.</em> 2011 to identify genes and exons that are regulated by Pasilla gene.
DOI: 10.35077/add-dub
title: Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1037468224

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: cell in slice
description: DATASET METADATA: title:'Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 1037468224', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'1037468224', Species:'human', NCBITaxonomy:'NCBI:txid9606', SampleLocalID:'1037468224', Locations:'MTG' INSTRUMENT METADATA: MicroscopeType:'NA', MicroscopeManufacturerAndModel:'NA' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114'