cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3657002_d1.v1
title: Additional file 2: of Genome-wide SNP discovery and QTL mapping for fruit quality traits in inbred backcross lines (IBLs) of solanum pimpinellifolium using genotyping by sequencing

description: Additional excel file containing physical maps of identified and filtered SNPs and the linkage map. (XLSX 165Â kb)
DOI: 10.6084/m9.figshare.c.3657002_d1
title: Additional file 2: of Genome-wide SNP discovery and QTL mapping for fruit quality traits in inbred backcross lines (IBLs) of solanum pimpinellifolium using genotyping by sequencing

description: Additional excel file containing physical maps of identified and filtered SNPs and the linkage map. (XLSX 165Â kb)
DOI: 10.6084/m9.figshare.c.3657047_d3
title: MOESM5 of A rapid method to increase transparency and efficiency in web-based searches

description: Additional file 5. Database of search results from Google Scholar title and full text searches for tillage systematic review case study.
DOI: 10.6084/m9.figshare.c.3657053_d1.v1
title: Additional file 1: of Should we perform a FAST exam in haemodynamically stable patients presenting after blunt abdominal injury: a retrospective cohort study

description: Spss datafile. (SAV 134Â kb)
DOI: 10.6084/m9.figshare.c.3657053_d1
title: Additional file 1: of Should we perform a FAST exam in haemodynamically stable patients presenting after blunt abdominal injury: a retrospective cohort study

description: Spss datafile. (SAV 134Â kb)
DOI: 10.6084/m9.figshare.c.3657047_d5.v1
title: MOESM1 of A rapid method to increase transparency and efficiency in web-based searches

description: Additional file 1. URL generator based on advanced search facility in Google Scholar.
DOI: 10.6084/m9.figshare.c.3657047_d5
title: MOESM1 of A rapid method to increase transparency and efficiency in web-based searches

description: Additional file 1. URL generator based on advanced search facility in Google Scholar.
DOI: 10.6084/m9.figshare.c.3657074_d1.v1
title: MOESM1 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

description: Additional file 1:Â Supplemental Tables. Table S1. Primers used in this study. Table S2. Calculations of electron balance for strains with and without added acetate. Table S3. Analysis of mutations present in strains relative to the published wild type sequence.
DOI: 10.6084/m9.figshare.c.3657131_d3.v1
title: MOESM3 of The effect of small solar powered ‘Bͻkͻͻ’ net fans on mosquito net use: results from a randomized controlled cross-over trial in southern Ghana

description: Additional file 3. Entomological data.
DOI: 10.6084/m9.figshare.c.3657131_d3
title: MOESM3 of The effect of small solar powered ‘Bͻkͻͻ’ net fans on mosquito net use: results from a randomized controlled cross-over trial in southern Ghana

description: Additional file 3. Entomological data.
DOI: 10.6084/m9.figshare.c.3657137_d2.v1
title: Additional file 3 of JACUSA: site-specific identification of RNA editing events from replicate sequencing data

description: Excel Spreadsheet with predictions on Fly head RNA sequencing data. (XLS 259 kb)
DOI: 10.6084/m9.figshare.c.3657137_d3.v1
title: Additional file 2 of JACUSA: site-specific identification of RNA editing events from replicate sequencing data

description: Excel Spreadsheet with predictions on HEK-293 DNA and RNA sequencing data. (XLS 8867 kb)
DOI: 10.6084/m9.figshare.c.3657137_d2
title: Additional file 3 of JACUSA: site-specific identification of RNA editing events from replicate sequencing data

description: Excel Spreadsheet with predictions on Fly head RNA sequencing data. (XLS 259 kb)
DOI: 10.6084/m9.figshare.c.3657137_d3
title: Additional file 2 of JACUSA: site-specific identification of RNA editing events from replicate sequencing data

description: Excel Spreadsheet with predictions on HEK-293 DNA and RNA sequencing data. (XLS 8867 kb)
DOI: 10.6084/m9.figshare.c.3657146_d1.v1
title: MOESM2 of Microbial communities in pyrene amended soil–compost mixture and fertilized soil

description: Additional file 2. Supporting material on phylotype sequences related to Tables S1, S2, S4, and S5.
DOI: 10.6084/m9.figshare.c.3657920_d8
title: Additional file 3: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: Details for each piRNA clusters found in High Motile (HM) sperm fraction. Genes, repeats, transposable elements and transcription factors binding sites falling within the cluster regions were reported. (ZIP 1896Â kb)
DOI: 10.6084/m9.figshare.c.3657920_d9
title: Additional file 5: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: miRNAs detected in High Motile (HM) and Low Motile (LM) sperm fraction by Mirdeep2. Normalized read counts were reported for each bull (Bull1, Bull2, Bull3, Bull4) and replicate (a, b, c). (XLSX 140Â kb)
DOI: 10.6084/m9.figshare.c.3658835_d1.v1
title: Additional file 2: of Evidence for genetic variation in Natterer’s bats (Myotis nattereri) across three regions in Germany but no evidence for co-variation with their associated astroviruses

description: Genotype table Myotis nattereri. Table of alleles per locus for each individual bat used for the population genetic analyses on the Natterer’s bat (Myotis nattereri) determined using Genemapper v 5.0 (Applied Biosystems). (XLSX 75 kb)
DOI: 10.6084/m9.figshare.c.3658835_d1
title: Additional file 2: of Evidence for genetic variation in Natterer’s bats (Myotis nattereri) across three regions in Germany but no evidence for co-variation with their associated astroviruses

description: Genotype table Myotis nattereri. Table of alleles per locus for each individual bat used for the population genetic analyses on the Natterer’s bat (Myotis nattereri) determined using Genemapper v 5.0 (Applied Biosystems). (XLSX 75 kb)
DOI: 10.6084/m9.figshare.c.3658829_d10.v1
title: Additional file 3: Table S2. of HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking

description: HiC-bench input-output objects. The table summarizes the inputs and outputs of the TAD-calling task using three different methods with parameter values stored in the params files (column 2). The first column describes the tree structure of the input directories that are essentially the different Hi-C matrices for each sample, before (filtered) and after matrix correction using different methods (e.g., IC). The second column lists all the different parameter scripts and the third column corresponds to the tree structure of the generated output objects. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3658829_d10
title: Additional file 3: Table S2. of HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking

description: HiC-bench input-output objects. The table summarizes the inputs and outputs of the TAD-calling task using three different methods with parameter values stored in the params files (column 2). The first column describes the tree structure of the input directories that are essentially the different Hi-C matrices for each sample, before (filtered) and after matrix correction using different methods (e.g., IC). The second column lists all the different parameter scripts and the third column corresponds to the tree structure of the generated output objects. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3658970_d1.v1
title: Additional file 1: of Rope-based oral fluid sampling for early detection of classical swine fever in domestic pigs at group level

description: Body temperature and clinical score of the individual animals through the course of the experiment. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3658970_d1
title: Additional file 1: of Rope-based oral fluid sampling for early detection of classical swine fever in domestic pigs at group level

description: Body temperature and clinical score of the individual animals through the course of the experiment. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3658973_d1.v1
title: Additional file 3: of Factors associated with occupancy of pharmacist positions in public sector hospitals in Uganda: a cross-sectional study

description: Hiring patterns of pharmacists into public hospitals (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3658973_d1
title: Additional file 3: of Factors associated with occupancy of pharmacist positions in public sector hospitals in Uganda: a cross-sectional study

description: Hiring patterns of pharmacists into public hospitals (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3658991_d1.v1
title: Additional file 1: Table S1. of Correlations between physical activity and neurocognitive domain functions in patients with schizophrenia: a cross-sectional study

description: The correlation among Demographics, Psychiatric symptoms, and Neurocognitive functions in inpatients group (n = 16). Table S2. The correlation among Demographics, Psychiatric symptoms, and Neurocognitive functions in outpatients group (n = 13). (XLSX 26 kb)
DOI: 10.6084/m9.figshare.28049951
title: Maianthemum canadensis raw GC-MS files

description: Metabolite extraction from Maianthemum canadensis seeds
DOI: 10.6084/m9.figshare.28049951.v1
title: Maianthemum canadensis raw GC-MS files

description: Metabolite extraction from Maianthemum canadensis seeds
DOI: 10.6084/m9.figshare.c.3659054_d1.v1
title: MOESM1 of “They’re younger… it’s harder.” Primary providers’ perspectives on hypertension management in young adults: a multicenter qualitative study

description: Additional file 1. Diagnosis and treatment thematic categories and sub-categories created for coding, as determined from the transcribed text for each provider interview.
DOI: 10.6084/m9.figshare.c.3659054_d1
title: MOESM1 of “They’re younger… it’s harder.” Primary providers’ perspectives on hypertension management in young adults: a multicenter qualitative study

description: Additional file 1. Diagnosis and treatment thematic categories and sub-categories created for coding, as determined from the transcribed text for each provider interview.
DOI: 10.6084/m9.figshare.c.3659030_d4.v1
title: Additional file 3: Figure S1. of Case report: whole exome sequencing of primary cardiac angiosarcoma highlights potential for targeted therapies

description: Genome-wide chromosomal copy number plot outputs from 1A) copy number analysis, 1B) LOH and allelic imbalance analysis, 1C) segmentation algorithm copy number analysis, and 1D) ExomeCNV copy number analysis. 1A) chromosomal plots contain chromosomal map position in megabases on the X-axis, and the log2 fold change ratio information on the Y-axis. Regions of copy neutrality (ratios between log2FC -0.75 and +0.75) are black, regions of copy number gain (ratio &gt; log2FC 0.75) are red, and regions of copy number loss (ratios
DOI: 10.6084/m9.figshare.c.3659030_d4
title: Additional file 3: Figure S1. of Case report: whole exome sequencing of primary cardiac angiosarcoma highlights potential for targeted therapies

description: Genome-wide chromosomal copy number plot outputs from 1A) copy number analysis, 1B) LOH and allelic imbalance analysis, 1C) segmentation algorithm copy number analysis, and 1D) ExomeCNV copy number analysis. 1A) chromosomal plots contain chromosomal map position in megabases on the X-axis, and the log2 fold change ratio information on the Y-axis. Regions of copy neutrality (ratios between log2FC -0.75 and +0.75) are black, regions of copy number gain (ratio &gt; log2FC 0.75) are red, and regions of copy number loss (ratios
DOI: 10.6084/m9.figshare.c.3659063_d2.v1
title: Additional file 4: of A 12-week randomized, double-blind, placebo-controlled multicenter study of choline-stabilized orthosilicic acid in patients with symptomatic knee osteoarthritis

description: Dataset Geusens et al. knee OA study. (XLS 112Â kb)
DOI: 10.6084/m9.figshare.c.3659063_d2
title: Additional file 4: of A 12-week randomized, double-blind, placebo-controlled multicenter study of choline-stabilized orthosilicic acid in patients with symptomatic knee osteoarthritis

description: Dataset Geusens et al. knee OA study. (XLS 112Â kb)
DOI: 10.6084/m9.figshare.c.3659138_d2.v1
title: MOESM2 of Differential expression of genes related to gain and intake in the liver of beef cattle

description: Additional file 2: Table S2. Differentially expressed genes in steer liver. LSMEANS by phenotypic quadrant, nominal P values and FDR p values are presented. Table includes the list of differentially expressed genes with nominal PÂ
DOI: 10.6084/m9.figshare.c.3659138_d2
title: MOESM2 of Differential expression of genes related to gain and intake in the liver of beef cattle

description: Additional file 2: Table S2. Differentially expressed genes in steer liver. LSMEANS by phenotypic quadrant, nominal P values and FDR p values are presented. Table includes the list of differentially expressed genes with nominal PÂ
DOI: 10.6084/m9.figshare.c.3659150_d1.v1
title: Additional file 5: of A genome-wide association study of seed composition traits in wild soybean (Glycine soja)

description: Candidate genes for the top SNPs associated with the seed composition traits. Soybean genes located in regions 50Â kb in both directions from top SNPS. Shown are the locations of each SNP, the soybean gene ID and the Arabadopsis best hit, symbol and description. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.c.3659141_d3.v1
title: Additional file 2: Table S1. of Temperature-dependent sRNA transcriptome of the Lyme disease spirochete

description: Annotated list of sRNAs found in this study. The table contains information about the genomic locations of all manually curated sRNAs and data from temperature differential expression analysis (log-fold change and adjusted P-values for edgeR and DEseq). Previously annotated RNAs contain the respective name and/or function in the Notes column. Please note that SsrA, ffs and RNaseP were annotated based on their respective entries in the BSRD database where they were previously predicted by sequence similarity. (XLSX 234 kb)
DOI: 10.6084/m9.figshare.c.3659150_d1
title: Additional file 5: of A genome-wide association study of seed composition traits in wild soybean (Glycine soja)

description: Candidate genes for the top SNPs associated with the seed composition traits. Soybean genes located in regions 50Â kb in both directions from top SNPS. Shown are the locations of each SNP, the soybean gene ID and the Arabadopsis best hit, symbol and description. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.c.3659141_d3
title: Additional file 2: Table S1. of Temperature-dependent sRNA transcriptome of the Lyme disease spirochete

description: Annotated list of sRNAs found in this study. The table contains information about the genomic locations of all manually curated sRNAs and data from temperature differential expression analysis (log-fold change and adjusted P-values for edgeR and DEseq). Previously annotated RNAs contain the respective name and/or function in the Notes column. Please note that SsrA, ffs and RNaseP were annotated based on their respective entries in the BSRD database where they were previously predicted by sequence similarity. (XLSX 234 kb)
DOI: 10.6084/m9.figshare.c.3659156_d8
title: Additional file 3: of 
                     De novo transcriptome and expression profile analyses of the Asian corn borer (Ostrinia furnacalis) reveals relevant flubendiamide response genes

description: Cytochrome P450 nucleotide sequences of the ACB. (TXT 48Â kb)
DOI: 10.6084/m9.figshare.c.3659141_d12.v1
title: Additional file 11: Table S4. of Temperature-dependent sRNA transcriptome of the Lyme disease spirochete

description: Transcriptome data comparison. Comparison of genes reported as temperature-dependent in a DNA microarray [52] and asRNAs we identified opposite to them. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3659141_d12
title: Additional file 11: Table S4. of Temperature-dependent sRNA transcriptome of the Lyme disease spirochete

description: Transcriptome data comparison. Comparison of genes reported as temperature-dependent in a DNA microarray [52] and asRNAs we identified opposite to them. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3659189_d1.v1
title: Additional file 1: of Genetic architecture of kernel composition in global sorghum germplasm

description: a priori gene candidate list. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3659189_d1
title: Additional file 1: of Genetic architecture of kernel composition in global sorghum germplasm

description: a priori gene candidate list. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3659189_d3
title: Additional file 2: of Genetic architecture of kernel composition in global sorghum germplasm

description: Five genetic groupings of sorghum association panel. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3659243_d2.v1
title: Additional file 4: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by NDtree, Z-score 1.64, Neighbor Joining tree, contigs from day 1 used as reference. PDF. b Tree inferred by NDtree, Z-score 1.64, Neighbor Joining tree, contigs from day 1 used as reference. Newick file. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.c.3659228_d6
title: Additional file 8: of Genome-wide analysis of starch metabolism genes in potato (Solanum tuberosum L.)

description: Normalized data all entities 8x60k. (TXT 11290Â kb)
DOI: 10.6084/m9.figshare.c.3659243_d2
title: Additional file 4: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by NDtree, Z-score 1.64, Neighbor Joining tree, contigs from day 1 used as reference. PDF. b Tree inferred by NDtree, Z-score 1.64, Neighbor Joining tree, contigs from day 1 used as reference. Newick file. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.c.3659243_d3.v1
title: Additional file 10: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by REALPHY, RAxML, NC_000913 and NC_012759 used as reference. PDF. b Tree inferred by REALPHY, RAxML, NC_000913 and NC_012759 used as reference. Newick file. (ZIP 6 kb)
DOI: 10.6084/m9.figshare.28049954.v1
title: Maianthemum racemosum raw GC-MS files

description: Metabolite extraction from Maianthemum racemosum leaf tissue
DOI: 10.6084/m9.figshare.c.3659228_d7.v1
title: Additional file 5: of Genome-wide analysis of starch metabolism genes in potato (Solanum tuberosum L.)

description: Entities similar to SuSy4, GPT2.1 and SBE3 in a) POCI experiments, b) 8x60k experiments and c) RNA-Seq data. d) shows the genes commonly co-expressed in all platforms. (XLS 1177Â kb)
DOI: 10.6084/m9.figshare.28049954
title: Maianthemum racemosum raw GC-MS files

description: Metabolite extraction from Maianthemum racemosum leaf tissue
DOI: 10.6084/m9.figshare.c.3659228_d7
title: Additional file 5: of Genome-wide analysis of starch metabolism genes in potato (Solanum tuberosum L.)

description: Entities similar to SuSy4, GPT2.1 and SBE3 in a) POCI experiments, b) 8x60k experiments and c) RNA-Seq data. d) shows the genes commonly co-expressed in all platforms. (XLS 1177Â kb)
DOI: 10.6084/m9.figshare.c.3659243_d3
title: Additional file 10: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by REALPHY, RAxML, NC_000913 and NC_012759 used as reference. PDF. b Tree inferred by REALPHY, RAxML, NC_000913 and NC_012759 used as reference. Newick file. (ZIP 6 kb)
DOI: 10.6084/m9.figshare.c.3659228_d8.v1
title: Additional file 2: of Genome-wide analysis of starch metabolism genes in potato (Solanum tuberosum L.)

description: Valid microarray identifiers for starch genes in the POCI 4x44k and 8x60k platforms. (XLS 46Â kb)
DOI: 10.6084/m9.figshare.c.3659243_d4.v1
title: Additional file 21: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: Spreadsheet with an overview of all 255 strains from the in vitro evolution experiment. The sequenced strains are marked in bold. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3659243_d4
title: Additional file 21: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: Spreadsheet with an overview of all 255 strains from the in vitro evolution experiment. The sequenced strains are marked in bold. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3659228_d8
title: Additional file 2: of Genome-wide analysis of starch metabolism genes in potato (Solanum tuberosum L.)

description: Valid microarray identifiers for starch genes in the POCI 4x44k and 8x60k platforms. (XLS 46Â kb)
DOI: 10.6084/m9.figshare.c.3659243_d15.v1
title: Additional file 8: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by REALPHY, PhyML, NC_000913, NC_012759 and NC_017641 used as reference. PDF. b Tree inferred by REALPHY, PhyML, NC_000913, NC_012759 and NC_017641 used as reference. Newick file. (ZIP 6 kb)
DOI: 10.6084/m9.figshare.c.3659243_d16.v1
title: Additional file 16: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: SNP alignment from the NDtree analysis with NC_000913 as reference genome. (FASTA 40 kb)
DOI: 10.6084/m9.figshare.c.3659243_d15
title: Additional file 8: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: a Tree inferred by REALPHY, PhyML, NC_000913, NC_012759 and NC_017641 used as reference. PDF. b Tree inferred by REALPHY, PhyML, NC_000913, NC_012759 and NC_017641 used as reference. Newick file. (ZIP 6 kb)
DOI: 10.6084/m9.figshare.c.3659243_d17.v1
title: Additional file 15: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: Position for mutations from S14 SNP alignment. (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3659243_d16
title: Additional file 16: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: SNP alignment from the NDtree analysis with NC_000913 as reference genome. (FASTA 40 kb)
DOI: 10.6084/m9.figshare.c.3659243_d17
title: Additional file 15: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: Position for mutations from S14 SNP alignment. (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3659243_d19.v1
title: Additional file 26: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: Tab separated table with systematic names, fastq filenames, age in the experiment and expected mutations to the strain from day 1 of the experiment, and indication of whether the node is a tip or internal node in the topology. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3659243_d18.v1
title: Additional file 17: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: Position for mutations from S16 SNP alignment. (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3659243_d19
title: Additional file 26: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

description: Tab separated table with systematic names, fastq filenames, age in the experiment and expected mutations to the strain from day 1 of the experiment, and indication of whether the node is a tip or internal node in the topology. (TXT 3 kb)