cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12667256.v2
title: Number of underway vessels in the Western Mediterranean (2016/01-2020/11)

description: Terrestrial AIS (T-AIS) data from the Western Mediterranean were collated by the Balearic Islands Coastal Observing and Forecasting System (SOCIB) using a real-time operational system connected to a web-service provided by MarineTraffic (https://www.marinetraffic.com/). The database used in this study contained AIS data from 1st January 2016 until 30th November 2020 at 5 minute intervals (&gt; 545 million AIS messages). In addition to the vessel tracks, the database also included information associated with each vessel, such as the vessel type or length. A first pre-processing of the raw data included the removal of duplicates, invalid identification numbers (i.e. Maritime Mobile Service Identity -MMSI- codes without 9 digits) and codes outside the correct numerical range (i.e. MMSI codes with first digits between 2 and 7 are those intended for individual ships). In order to address inconsistencies in the vessel and MMSI combinations (e.g., changes of MMSI across years), we selected the more frequent combination of MMSI and vessel characteristics (e.g. vessel name and vessel type) for each calendar year. We used a similar vessel categorization as the S-AIS dataset, but were able to derive a sixth category from the AIS metadata, separating “recreational” vessels from “other” vessels. Therefore, vessels were classified into six categories: cargo, tanker, passenger (included high speed crafts and passenger vessels), fishing, recreational (included sailing vessels and pleasure crafts), and others (included all other ship types). We excluded ship type codes 20 to 29 (i.e. wing-in-ground-effect and search and rescue aircraft), as well as codes that had an invalid value (i.e. empty or null) or the value was not listed in the previous type codes. We calculated the number of vessels per day taking into account only those that were underway, thus removing moored vessels inside ports that were inactive. T-AIS coverage was not homogenous in the study area (Holmes et al. 2020) due to a non-uniformly distribution of antennas (i.e. few antennas in north Africa, see www.marinetraffic.com). Based on a previous analysis of the AIS coverage (Holmes et al 2020), we filtered vessels within the coastal zone (44.4 km, ~24 nautical miles) of EU countries (i.e. a total area of 164,318.2 km2 comprised by Spain, France and Italy), thus reducing potential bias due to temporal gaps in signal reception.<br>
DOI: 10.6084/m9.figshare.25374379.v1
title: Enemies of Galls Data 2024

description: This set includes all the datasheets necessary to run the analyses associated with the manuscript: "External insect gall morphology influences the functional guilds of natural enemy communities" submitted anonomously 2024.
DOI: 10.6084/m9.figshare.28497698.v1
title: Six-hour hypoxia induced protein degradation in <i>M. gastrocnemius</i> of 24-day-old mice by activating FOXO1 and suppressing AKT-mTORC1.Supplementary Tables

description: Long-term hypoxia has been associated with skeletal muscle atrophy, including increased protein degradation over protein synthesis. This contrasts sharply with muscle hypertrophy and net protein synthesis occurring in developing skeletal muscle of young mice. Here, we aimed to understand the impact of acute, physiologically plausible environmental hypoxia on muscle proteostasis of the <i>M. gastrocnemius </i>of young mice. Fasted prepubertal, 24-day-old male B6JRccHsd(B6J)-<i>Nnt</i><sup><em>+</em></sup>/Wuhap mice with similar body weight and lean mass were exposed to normobaric hypoxia (12% O<sub>2</sub>) or normoxia (20.9% O<sub>2</sub>) for 6 hours. The transcriptome (n=12) and protein (n=6) responses of the <i>M. gastrocnemius</i> were analyzed. A hypoxic response of <i>M. gastrocnemius</i> was confirmed by increased expression of HIF1 (<i>Ankrd37</i> and <i>Ddit4</i>) and forkhead box-O (FOXO) 1 (<i>Depp1</i> and <i>Ddit4</i>) target genes. RNA-Seq analysis revealed that hypoxia activated FOXO signaling, which was confirmed by increased FOXO1 protein levels and decreased p-AKT/AKT ratio. Detailed mapping of the FOXO1 pathway suggests a strong FOXO1-mediated hypoxic effect on protein degradation and synthesis. A central role of <i>Atf4 </i>is suggested by the hypoxic-dependent positive correlations with FOXO1, FBXO32, <i>Depp1, Eif4ebp1</i>, and <i>Ddit4</i>. Further analyses showed increased FBXO32, which positively correlated with FOXO1, and decreased p-S6K/S6K and p-4E-BP1/4E-BP1 ratios. Our results showed for the first time that a 6-hour exposure to 12% O<sub>2</sub> normobaric hypoxia in 24-day-old mice activates FOXO1 signaling in <i>M. gastrocnemius</i>,<i> </i>resulting in decreased protein synthesis and increased protein degradation most likely via reduced energy availability, which may be relevant for infant air or high altitude traveling.
DOI: 10.6084/m9.figshare.28524569.v1
title: Data for: Heterogeneous individuals impede the establishment of cultures in animal groups

description: Data from simulations run on an agent-based model designed to assess how the presence and extent of heterogeneity in propensity for social learning can interact with transmission probability (i.e., the complexity and regularity of the task being performed), network size and structure, and attribute distributions (i.e., homophilic or random) to regulate the likelihood of establishing inventions.
DOI: 10.6084/m9.figshare.7510010.v1
title: Gas Turbine Course's Teaching Process at Instituto Tecnológico de Aeronáutica: Theory and Laboratory

description: ABSTRACT: The Instituto Tecnológico de Aeronáutica (ITA) is an Engineering school maintained by the Air Force Command, Ministry of Defense. The aim of the Turbomachines Department at ITA is the human resources training for design and development of aeronautical and industrial gas turbines, necessary for the Gas Turbine Program of the Departamento de Ciência e Tecnologia Aeroespacial (DCTA). The human resources training is carried out in undergraduate and graduate courses at ITA, where topics in gas turbine and turbomachinery are taught. The gas turbine topic is taught in the undergraduate degree, in Mechanical-Aeronautical Engineering course, and focuses on gas turbines' performance for different configurations (turboshaft, turbojet and turbofan). Lecture notes containing the essential elements of the course are made available for the students, addressing the basic theory of the gas turbines required for the performance study at the design and off-design point. The technological aspects are presented and discussed during detailed studies of the actual cycle. Simple gas turbines and more sophisticated ones are studied, for both aeronautical and industrial application. Performance calculations at design and off-design point of the main engine's components and the cycle are done manually, encouraging students to develop spreadsheets. The theory is complemented with laboratory classes and technical visits, when the practicalities involving gas turbines operation and tests are presented to the students. As an activity laboratory class, the students perform disassembly-assembly of a small industrial gas turbine.
DOI: 10.6084/m9.figshare.7991276.v1
title: Outcome measures & analyses scripts for "Corticomuscular control of walking in older people and people with Parkinson’s disease"

description: Time- and frequency domain, gait and clinical outcome measures during overground and treadmill walking in healthy young, healthy older and people with Parkinson's disease; input data into SPSS. Data were recorded via EEG from left and right sensorimotor cortices and EMG from left and right Tibialis Anterior muscles.<br>
DOI: 10.17632/hg89dvf9mn
title: Correlation of gut microbiota and metabolic functions with the antibody response to the BBIBP-CorV vaccine

description: We investigate whether the human gut microbiota and metabolic function correlate with the inactivated SARS-CoV-2 vaccine (BBIBP-CorV, CNBG) response. A total of 207 participants who receive the BBIBP-CorV vaccine at Days 0 and 28 are enrolled. The gut microbiome and related metabolic functions are investigated using metagenomic sequencing and metabolomic assays. We find that BBIBP-CorV vaccination is accompanied by altered gut microbiome composition and functional pathways, and the gut microbiome and its functional profiles correlate with the vaccine response. Targeted metabolomic analysis show that the fecal and serum levels of short-chain fatty acids (SCFAs) are much higher in the high antibody response group compared to the low response group after vaccination, and several SCFAs display a positive correlation with the ACE2-RBD inhibiting antibody response. Our study highlights that gut microbiome and its function is associated with the BBIBP-CorV vaccine response, providing evidence for further exploration of microbiome modulation to improve COVID-19 vaccine efficacy. 
All these spreadsheets were created during the metagenomic sequencing analysis, and used for alpha, beta diversity analysis, and correlation analysis, etc.
DOI: 10.6084/m9.figshare.27282378.v1
title: Plot data，BP code and testing data

description: Plot data，BP code and testing data。Other data will be made available on reasonable request from the corresponding author.
DOI: 10.6084/m9.figshare.28012295.v1
title: Glossary of Tetrapod Tracks – Supplementary files

description: 3D models illustrated in Lallensack, Leonardi, and Falkingham "Glossary of Tetrapod Tracks". The folder "Wind erosion human tracks" also contains a video.Other 3D models figured in the Glossary can be found athttps://doi.org/10.6084/m9.figshare.28015949.v1<br>and<br>https://doi.org/10.6084/m9.figshare.28016168.v2<br><br>
DOI: 10.17632/jz2srpkw3h
title: ASSESSMENT OF SEROLOGICAL METHODS BASED ON ELISA AND RDT (RAPID DIAGNOSTIC TEST) AS POINT OF CARE TESTING (POCT) IN THE DIAGNOSIS OF LEPTOSPIROSIS

description: Most leptospira diagnosis utilizes serology-based methods, such as (Enzyme Linked Immunosorbent Assay) ELISA and (Rapid Test Diagnostic) RDT. Each methods were assessed based on sensitivity, specificity, Positive Predictive Value (PPV), Negative Predictive Value (NPV), and accuracy. The ELISA combined analysis of the sensitivity value has quite high results with a high heterogeneity value, namely 90% (95% CI: 85 - 94, I2: 97.45%). While the specificity value has a fairly high yield with a high heterogeneity value, namely 90% (95% CI: 82 - 95, I2: 98.79%). The results of the RDT combined analysis of the sensitivity value have quite satisfactory value with quite high heterogeneity, namely 85% (95% CI: 77 - 91, I2: 97.36%). While the specificity value has a fairly high yield with a high heterogeneity value, namely 93% (95% CI: 89 - 96, I2: 98.86%)
DOI: 10.6084/m9.figshare.13049519.v1
title: Lebedova_data.sav

description: Data were collected through an online questionnaire. We obtained respondents mainly through various Facebook groups and through a personal request to fill in the questionnaire and share it with other people. Data collection was divided into two parts to reduce common method bias (Podsakoff, Mackenzie, Lee, & Podsakoff, 2003). The first part contained a scale of job autonomy, a scale of occupational self-efficacy (independent variables), and demographic data. The second part contained a scale of work performance (dependent variable) and was administered two weeks after the completion of the first part.<b>Job autonomy</b>. The Work Design Questionnaire (Morgeson and Humphrey, 2006) was used to measure job autonomy. Job autonomy is divided into three dimensions in this questionnaire: work scheduling autonomy (e.g., <i>"The job allows me to decide on the order in which things are done on the job”</i>), decision-making autonomy (e.g., <i>"The job allows me to make a lot of decisions on my own”</i>), and work methods autonomy (e.g., “<i>The job allows me to decide on my own how to go about doing my work”</i>). Each dimension was measured using three items, which were rated from 1 (strongly disagree) to 5 (completely agree).<br><b>Occupational self-efficacy</b>. To measure occupational self-efficacy, we used a short form of the Occupational Self-efficacy Scale (Schyns & von Collani, 2002), which consists of eight items (e.g., <i>“If I am in trouble at my work, I can usually think of something to do”</i>), rated on a Likert-type scale from 1 (“not at all true”) to 6 (“completely true”).<br><b>Individual work performance</b>. We measured individual work performance using the 18-item Individual Work Performance Questionnaire (IWPQ; Koopmans et al., 2012), which consists of three dimensions: task performance (e.g., <i>“In the last three months, I managed to plan my work so that it was done on time”</i>), contextual performance (e.g., <i>“In the last three months, I started new tasks myself when my old ones were finished”</i>), and counterproductive work behavior (e.g., <i>“In the last three months, I complained about unimportant matters at work”</i>). Respondents rated the frequency of the specified behavior on a five-point scale. Task performance and contextual performance were rated from “seldom” to “always.” Counterproductive work behavior was rated from “never” to “often.”<br>
DOI: 10.6084/m9.figshare.19714327.v3
title: Figure 3

description: energy dissipation rate (%)
DOI: 10.15468/dl.q6qn2v
title: Occurrence Download

description: A dataset containing 39561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leucaena leucocephala (Lam.) de Wit)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 39561 records from 630 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013331-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/p8sss9vrby
title: Audio Human Activity Classification and Prediction 

description: Experimental code, data, and results for a proof-of-concept proving the feasibility of audio prediction in smart environments.
DOI: 10.17632/w8jtmnszd9
title: The Proteomic Landscape of Genome-Wide Genetic Perturbations

description: Functional genomic strategies have become fundamental for annotating gene function and regulatory networks. Here, we combined functional genomics with proteomics by quantifying protein abundances in a genome-scale knock-out library in Saccharomyces cerevisiae, using data-independent acquisition mass spectrometry. We thus created a large, systematic, and quantitative proteomic dataset, with an average of 2,520 proteins quantified across 4,699 yeast gene knock-out strains. The proteome profiles comprise over 100 million peptide quantitations and 9 million protein quantitations. These link deleted genes to proteins and provide a genome-scale resource of molecular phenotypes for 79% of the coding yeast genome.
DOI: 10.17632/wt93jy5f2x
title: Household applicances prices from a Russian online marketplace

description: The data are the prices collected from market.yandex.ru, the largest Russian online marketplace. The sample includes 30 the most popular household applicances divided into 5 categories: warm ovens, fridges, cooktops, cooker hoods, washing machines and dishwashers. The period is from July 15 to October 12 at 2015. The prices were sampled 4 times per day at 1-00, 7-00, 13-00 and 19-00. The data was collected using the internal API provided by Yandex company. The shops are anonimized due to the Yandex corporate policy. The primary aim of the research was to study price dispersion previosly reported for major online marketplaces such as Amazon.com in US. Folders and files: prices/ - contain 30 files where the filenames are 'product_id.csv' products.csv - contains identifiers, categories and the names of the products The price files have the following structure. The first column stores the timestamps and the other columns store the prices posted by each shop for the given product at the given time. All files have equal number of columns while some columns consist exclusively of NaN values since not every shop offered every product in the sample. timestamp; shop_1; shop_2; ... ; shop_N 4/07/15 01:00; 16860.00; NaN; ...
DOI: 10.6084/m9.figshare.10262630.v1
title: raw_proteinortho_output.tsv.tar.gz

description: This is the raw proteinortho output for the orthologous clusters prediction in Moniruzzaman et al., 2019. <br>
DOI: 10.6084/m9.figshare.24516247.v1
title: Dataset of "Alpine birds in a sky island: resource subsidies from foothill areas"

description: Dataset of "Alpine birds in a sky island: resource subsidies from foothill areas"<br>Details of the dataset are provided in the README.txt.<br><b>Abstract</b><br>Material fluxes between ecosystems subsidize consumers in recipient ecosystems. While alpine zones are generally regarded as isolated, arthropods from lower elevations may be deposited on the snow surface in alpine zones by flight or wind. This arthropod fallout should be essential food resources for alpine consumers that are forced to deal with scarce food in environments. In this study, the source location of arthropods that fell onto the alpine snowpack were examined using data of their host plants. Furthermore, seasonal changes in the arthropod diets of two insectivorous and one primarily herbivorous alpine bird species were evaluated by fecal DNA metabarcoding with correction of PCR amplification bias among arthropod taxa using DNA mock assemblages of arthropods. We present quantitative evidence that winged aphids originating from the subalpine and montane zones are abundant on the snowpack. These subsidized aphids accounted for approximately 40% of the arthropod portion of the diet, and 6 to 40% of the overall diet, of these birds during their early breeding seasons. Our findings indicate that material fluxes from foothill areas contribute to the maintenance of biotic communities in alpine ecosystems during less productive seasons.
DOI: 10.6084/m9.figshare.20250816.v1
title: CARE benchmark v2

description: benchmark_v2 for CARE.
DOI: 10.6084/m9.figshare.22678999.v1
title: Climate-driven ecological thresholds in China’s drylands modulated by grazing

description: Dataset for "Climate-driven ecological thresholds in China’s drylands modulated by grazing"
DOI: 10.6084/m9.figshare.22825313.v1
title: Data for forest type classification and tree species habitat models in North America

description: Grid-level input data with tree species importance value index (IVI) for each region (West, East, and Boreal) for each time frame (2000–2019 and 1970–1999) and raster layers (geoTIFF) of forest type and biome. Coordinates in the grid-level input data denote the location of the grid centroid. Raster values are described in RasterAttributes.xlsx.
DOI: 10.6084/m9.figshare.27100759.v1
title: vuoto.rtf

description: Data and code used in the manuscript "<b>Analysis of cross-sectional entomological data reveals an increased risk of arboviral transmission in a year of extreme temperatures in Southern Europe</b>" submitted to Nature Communications
DOI: 10.6084/m9.figshare.28639523.v4
title: Neutrophil Extracellular Trap-borne C3-Driven Endothelial Dysfunction in <i>Klebsiella pneumoniae</i> Liver Abscess

description: <i>Klebsiella pneumoniae</i> (<i>K</i><i>.</i><i> pneumoniae</i>) liver abscess (KPLA) is a severe bacterial infection that is frequently complicated by intrahepatic thrombophlebitis and extrahepatic metastatic infections leading to high mortality rates. This study investigates the role of neutrophil extracellular traps (NETs) in endothelial injury and disease progression in KPLA. Our findings reveal that KPLA patients with intrahepatic thrombophlebitis are more prone to developing sepsis and extrahepatic migratory infections. <i>K. pneumoniae</i> induces NET formation via the TLR4-PI3Kα-AKT signaling pathway, and C3 deposition on NETs significantly contributes to endothelial injury. In a KPLA mouse model, increased C3 levels were observed in the liver, with NETs carrying substantial amounts of C3, disrupting the endothelial barrier and exacerbating liver injury. Treatment with the C3 inhibitor AMY-101 reduced C3 deposition on NETs, alleviated endothelial damage, significantly improved survival, and reduced extrahepatic dissemination, inflammatory infiltration, and lung injury while also suppressing systemic inflammation. Our findings underscore the pivotal role of C3 in NET-mediated endothelial damage and the pathogenesis of KPLA. Thus, targeting C3 deposition on NETs may be a promising therapeutic strategy to reduce endothelial injury, thrombosis, and extrahepatic infections in KPLA without compromising neutrophil antimicrobial function.
DOI: 10.6084/m9.figshare.29143595.v1
title: Final SWOT analysis 24.05.2025

description: The SWOT analysis of OCOP and rural tourism integration using secondary data from 50 articles across 29 provinces and cities in Vietnam
DOI: 10.6084/m9.figshare.4640686.v1
title: A High-Speed Brain-Computer Interface (BCI) Using Dry EEG Electrodes

description: This dataset contains the EEG data from 12 subjects using a c-VEP Brain-Computer Interface using dry EEG electrodes.<br><br>Spüler M (2017) A high-speed brain-computer interface (BCI) using dry EEG electrodes. <i>PLoS ONE</i> 12(2): e0172400. doi:10.1371/journal.pone.0172400
DOI: 10.17632/cb2hngpmcm
title: Data for: Friction Angle and Overconsolidation Ratio of Soft Clays from Cone Penetration Test

description: Numerical results of cone penetration testing using press-replace method in undrained modified Cam-clay soil model
DOI: 10.6084/m9.figshare.22317202.v1
title: Changes in soil organic carbon in response to climate extremes under warming across globe biomes

description: The <strong>2023-SOC-climate_global.R</strong> is R script used to generate the results in the paper entitled "<strong>Changes in soil organic carbon in response to climate extremes under warming across globe biomes</strong>". <br> The title of each R script provides a brief introduction of the purpose of the code. <br> The<strong> deltaSOC induced by climate extremes.tif </strong>is the mapping production generated in this paper.
DOI: 10.6084/m9.figshare.22820417.v1
title: Global offshore wind turbines dataset

description: A total of 12,412 OWTs have been identified within the offshore Exclusive Economic Zones (EEZ) of countries worldwide, with 5915 in Europe, 6490 in Asia, and only 7 in the United States. Installation dates of existing OWTs worldwide reveal an exponential growth trend since the 21st century, with Europe leading the way and Asia catching up rapidly, building two-thirds of its turbines after 2019.
DOI: 10.6084/m9.figshare.23709717.v2
title: Supplemental material files--Acute aerobic exercise regulation of myocardial calcium homeostasis involves Casq1, Casq2 and Trdn

description: Supplemental material files--Acute aerobic exercise regulation of myocardial calcium homeostasis involves Casq1, Casq2 and Trdn
DOI: 10.6084/m9.figshare.24559120.v5
title: Adaptive evolution of sesquiterpene deoxyphomenone in mycoparasitism by <i>Hansfordia pulvinata</i> associated with horizontal gene transfer from <i>Aspergillus</i> species

description: Phylogenetic analysis of deoxyphomenone biosynthetic genes.
DOI: 10.6084/m9.figshare.27918468.v1
title: Intra and inter -decadal scale variability in kelp population structure reveal both stability and decline in a critical foundation species

description: Raw data for "Intra and inter -decadal scale variability in kelp population structure reveal both stability and decline in a critical foundation species"