cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/6c46mnmkds
title: Mechanical stimulation from the surrounding tissue activates mitochondrial energy metabolism in differentiating germ cells. Wang et al., 2023

description: The data file contains 16 original data folders, with microscopy images and GraphPad files for quantifications.

Figure 1. Cyst flattening drives JNK-mediated OXPHOS activation during differentiation.
Figure 2. Membranes at the germ cell interfaces are stretched in the flattened differentiating cysts.
Figure 3. OXPHOS activation in differentiating cysts requires increased membrane stretching.
Figure 4. Tmc is required for OXPHOS activation in differentiating cysts.
Figure 5. Tmc maintains cytosolic Ca2+ concentration in differentiating cysts.
Figure 6. Cytosolic Ca2+ triggers OXPHOS activation in differentiating cells through CaMKI and Fray.
Figure 7. A schematic of the mechanotransduction pathway that activates OXPHOS during ovarian cyst differentiation. 
Supplemental Figure S1. pFCs’ wrapping is required for flattening and OXPHOS induction of differentiating cysts, related to Figure 1.
Supplemental Figure S2. Flattening of differentiating cysts induces the IIS-Myc-ETC biogenesis axis, related to Figure 1.
Supplemental Figure S3. Membranes at the germ cell interfaces are stretched in flattened differentiating cysts, related to Figure 2.
Supplemental Figure S4. Regulation of plasma membrane stretching in differentiating cysts by manipulating cortical tension, related to Figure 3.
Supplemental Figure S5. OXPHOS induction in differentiating cysts requires Tmc, related to Figure 4.
Supplemental Figure S6. Calibration of the UASz-mTagBFP2-P2A-GCaMP6s fusion protein in S2 cells and cytosolic Ca2+ properties in undifferentiated and differentiating germline cysts, related to Figure 5.
Supplemental Figure S7. Expression of Tmc and JNK mRNA in germaria and the specificity of DNA probes used in smFISH, related to Figure 5.
Supplemental Figure S8. Germline expression of PV impairs JNK and OXPHOS induction in differentiating cysts, related to Figure 5.
Supplemental Figure S9. Mitochondrial Ca2+ is essential for OXPHOS induction in differentiating cysts, related to Figure 5.
Supplemental Figure S10. Fray is downstream of CaMKI, related to Figure 6.
DOI: 10.17632/76ymnprymp
title: Neutron Activation Analysis, Hematite/Ochre from Missouri and Illinois, U.S.A.

description: This data was produced at the Archaeometry Laboratory at the University of Missouri Research Reactor through Neutron Activation.  Data was produced in 2006, 2019, and 2021.  Data include archaeological samples from the St. Louis Region of Missouri and Illinois, and from Verkamp Rockshelter in Phelps County, Missouri.  Also included are data from various raw material deposits in Southeastern Missouri.  The data was produced for the purpose of determining the provenance of archaeological hematites. Results demonstrated that compositional differences between St. Louis region samples and those from Phelps County.  Likewise, raw material samples were discriminated from all archaeological samples. In essence, though southeastern Missouri has an abundance of raw Fe-oxide deposits, it appears that the St. Louis region archaeological samples may have originated elsewhere. To appropriately use the data, the user should be sure to normalize the data for the influence of elevated Iron content.
DOI: 10.17632/84gndytbsm
title: Data for: Exploring the relationship between teacher enjoyment of mathematics, their attitudes towards student struggle and instructional time amongst early years primary teachers

description: Survey data from a sample of 102 teachers and teacher-leaders (Foundation to Year 2) from a professional learning day in Melbourne, Australia. Amongst other things, the data set captures teacher attitudes towards student struggle, teacher enjoyment of teaching mathematics and instructional time.
DOI: 10.17632/8t77sbbv9m
title: Chapter 4A
DOI: 10.17632/9bz3vshdrn
title: TMY for Sauce Viejo (Argentina) and Frankfurt am Main (Germany)

description: TMY of Sauce Viejo:
BCSauceViejo.mat = Solar radiation, and Ambient temperature.
relHum_SauceViejox.mat = Relative humidity.
Roofhext_SauceViejox.mat = Convective heat transfer coefficient.
TSky_SauceViejox.mat = Sky temperature.

TMY of Frankfurt am Main:
BCFrankfurt.mat = Convective heat transfer coefficient, Solar radiation, and Ambient temperature.
relHum_Frankfurt.mat = Relative humidity.
TSky_Frankfurt.mat = Sky temperature.
DOI: 10.17632/9d63jcc972
title: Data for: Model for the correlation between magnetocrystalline energy and Barkhausen noise in ferromagnetic materials

description: In the present work a model for the correlation between magnetocrystalline anisotropy energy and Barkhausen noise is proposed. The link between the magnetocrystalline anisotropy energy and the magnetic Barkhausen noise is due to the influence of the crystallographic texture on the domain nucleation process which produces the Barkhausen signal in the branch from saturation to remanence. The statistical distributions of magnetic free poles and local fields of nucleation and subsequent growth of reversed domains were obtained for a large number of grain boundaries and used to estimate the number and size of Barkhausen events at each angular position from 0 to 360° in ten degree-steps. The good agreement observed between the modeled magnetocrystalline energy and the prediction of this energy made from X-ray texture and Barkhausen noise measurements corroborates the validity of the proposed model.
DOI: 10.17632/cps85tdhb6
title: Test 3

description: Test description
DOI: 10.17632/d6zyzjmdvs
title: Nour dataset

description: Clinical data and image analysis
DOI: 10.17632/d726nn3y63
title: FOLU

description: Crop diversification sustainable agriculture
DOI: 10.17632/f3xhcbyn4b
title: Precision analysis of mutant U2AF1 activity reveals deployment of stress granules in myeloid malignancies. Biancon et al.

description: Original uncropped western blot, gel and autoradiogram images in Figures S1B, S1E, S2B and S5B.
DOI: 10.17632/gv2rxtgdmt
title: LINF_220008900

description: DNA primase small subunit
Leishmania infantum (strain JPCM5)
DOI: 10.17632/hfwz2fdypg
title: JDS miRNA supplemental Figure S8

description: Correlation circle plot representing the miRNAs selected by sPLS-DA performed on the 800 miRNAs detected in plasma
DOI: 10.17632/htjs9msjhr
title: Data for: In search of sediment deposits from the Limpopo (Delagoa Bight, southern Africa): Deciphering the catchment provenance of coastal sediments

description: Element concentrations in marine and terrestrial sediments Core data of sampling sites AMS 14C data
DOI: 10.17632/jsd8j7wj97
title: Phylogenomic relationships and historical biogeography in the South American vegetable ivory palms (Phytelepheae)

description: Data for phylogenomic analyses in the vegetable ivory palms (Phytelepheae). Please read the "read me" file and check the published preprint for detailed methods https://doi.org/10.1101/2020.09.03.280941.

ABSTRACT: The palm tribe Phytelepheae form a clade of three genera and eight species whose phylogenetic relationships and historical biogeography are not fully understood. Based on morphological similarities and phylogenetic relatedness, it has been suggested that Phytelephas seemannii and Phytelephas schottii are synonyms of Phytelephas macrocarpa, implying the existence of only six species within the Phytelepheae. In addition, uncertainty in their phylogenetic relationships in turn results in blurred biogeographic history. We inferred the phylogenomic relationships in the Phytelepheae by target-capturing 176 nuclear genes and estimated divergence times by using four fossils for time calibration. We lastly explored the biogeographic history of the tribe by inferring its ancestral range evolution. Our phylogenomic trees showed that P. seemannii and P. schottii are not closely related with P. macrocarpa, and therefore, support the existence of eight species in the Phytelepheae. The ancestor of the tribe was widely-distributed in the Chocó, Magdalena, and Amazonia during the Miocene at 19.25 Ma. Early diversification in Phytelephas at 5.27 Ma could have occurred by trans-Andean vicariance after the western Andes uplifted rapidly at ~10 Ma. Our results show the utility of phylogenomic approaches to shed light on species relationships and their biogeographic history.
DOI: 10.17632/kzry43k9nb
title: G2DEM: A parallel two-dimensional electromagnetic PIC code for the study of electron-cyclotron instabilities of relativistic electron beams in cylindrical cavities

description: Abstract A two-dimensional PIC code aimed at the investigation of electron-cyclotron beam instabilities in gyrotrons and their effects on the beam quality is presented. The code is based on recently developed techniques for handling charge conservation and open boundaries and uses all electromagnetic field which is decomposed in its transverse magnetic (TM) and electric (TE) components. The code has been implemented on the massively parallel computer CRAY T3D, but can also be run on a single processor... Title of program: G2DEM Catalogue Id: ADGD_v1_0 Nature of problem G2DEM (Gyrotron 2 Dimensions ElectroMagnetic) solves Maxwell's equations and the relativistic equations of motion for an annular electron beam in an axisymmetric cylindrical cavity (r,z) open at both ends. This program is used to determine the effects of electron-cyclotron instabilities (electrostatic and electromagnetic) on the velocity distribution of the beam. This is of practical interest, because the best gyrotron efficiency is obtained with monochromatic beams and any beam degradation, lea ... Versions of this program held in the CPC repository in Mendeley Data ADGD_v1_0; G2DEM; 10.1016/S0010-4655(97)00057-X This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/n83wghxwhj
title: EXPLORING THE RELATIONSHIP BETWEEN CROSS-CULTURAL DIFFERENCES AND ORGANIZATIONAL PRODUCTIVITY: A CASE STUDY ANALYSIS

description: Abastract: Purpose: This study paper aims to examine the influence of cross-cultural awareness and differences on organisational productivity and workplace dynamics. The present study offers an initial exploration of the phenomenon of cross-cultural diff and its influence on an organization's brand equity and its personnel. This study exclusively employs secondary research methods and relies solely on Scopus-indexed papers. The findings of the research indicate that... When well managed, difference within an organisation can yield favourable outcomes in terms of production and operational efficiency. The implementation and management of differences within an organisation can present challenges, including conflicts and worker ignorance. However, neglecting to embrace differences can result in missed opportunities to attract talented individuals possessing a nuanced comprehension of international and local markets, as well as cultural sensitivity. This paper seeks to examine the impact of cross-cultural differences on organisations, the potential benefits of differcnces for organisations and their productivity, the effects of actively adopting differences strategies in the workplace, and the challenges associated with effectively managing differences in organisations.
DOI: 10.17632/npy5k8z69p
title: The foraminiferal distribution at Neolithic Daxie site, East China

description: Here we present the vertical distribution of foraminiferal assemblage in two profiles collected at a Neolithic site on the Daxie island, East China. The results indicated that the site evolved from tidal flat into freshwater environment at ca. 4900 cal yr BP. However, the occurrence of foraminifer in the cultural layer of Daxie Phase II indicates that the site had changed into a sea-salt production site at ca. 4400 cal yr BP, which is suggested to be a respone to the relative sea-level rise at that time.
DOI: 10.17632/pc5zzcyccb
title: Data for: Rapid Synthesis of 4-Alkynyl Coumarins and Tunable Electronic Properties of Emission Solvatochromic Fluorophores

description: This file contains the supporting information of the manuscript "Rapid Synthesis of 4-Alkynyl Coumarins and Tunable Electronic Properties of Emission Solvatochromic Fluorophores", selected 1H and 13C NMR spectra, UV/Vis, fluorescence spectra and linear regression analyses of LFER, and DFT and TD-DFT computational data.
DOI: 10.17632/pvr8mb3w6z
title: Dataset 5I: Certification files, sigma = 2 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All composite output files from certifying solutions from Paramotopy runs with \sigma = 2.0.
DOI: 10.17632/syx74r94bx
title: LINF_270008200

description: TATA-binding protein interacting (TIP20)
Leishmania infantum (strain JPCM5)
DOI: 10.17632/szf5gz82jp
title: Impact of Multimodal Cognitive Training on Cognitive Traits of Children: A Multi-centric Interventional Study

description: Cognitive training (CT) has recently become appealing for children and elderly citizens, and in this article we evaluated one such cognitive skills enhancement training program called the Brighter Minds. We explore the hypothesis that CT can work on some of the inherent traits of a child and thus bring a change in the external behavior. A controlled before and after study was conducted for this program, and a total of 186 children (93 each in intervention and control group) participated in the study from three different locations. A selected set of psychometric tests, parental/ caregiver interviews and EEG (electroencephalography) tests were conducted before and after the study. Psychometric test results showed strong statistical significance improvements in tests of Mini Mental Status Examination (MMSE) (P&lt;0.01), and Memory profile (P&lt;0.01). The parental/ caregiver interview results showed that, among the intervention group, statistically significant improvements were seen in child’s focus (P&lt;0.05), empathy (P&lt;0.05), intuition (P&lt;0.05), comprehension (P&lt;0.05) and child’s understanding of abstract concepts (P&lt;0.05). In the EEG Power Spectral Density (PSD), there were differences observed between the control and the intervention group. During the baseline eyes-closed (EC) EEG recording for the control group, the spectrum below 20Hz exhibited the characteristic “1/f” spectral scaling of the power-law. This signature matches prior reported evidence in literature of those in wakeful state. The intervention group EC PSD, however, exhibited a signature similar to those in a slow sleep state reflective of the possible transfer effect of the training on other skills like relaxation.
DOI: 10.17632/vzp6m6f8cc
title: Data for: An Immunocompetent Rat Model of Infection with Cryptosporidium species, hominis and parvum

description: Data obtained from (qPCR and immunohistology) intratracheal infection of Cryptosporidium parvum or C. hominis sporozoites in rats.
DOI: 10.17632/xy3zzmbxf5
title: Research Into Potential Therapies Against COVID-19, With Focus On Ivermectin

description: Purpose: Ivermectin is a broad-spectrum antiparasitic and an effective drug to treat COVID-19. In this article, we looked at the effects of ivermectin on coronavirus and its patients in three ways. We have discussed and organized other previously discovered potential therapies and reviewed them in Table 2 and in the last section. 
Methods: We searched for articles on MedRxiv, PubMed, Google Scholar, MEDLINE, EMBASE uses the appropriate search terms. ClinicalTrials.gov was searched for available clinical trials evaluating the effectiveness of ivermectin. We also use EU clinical trial registry data and ANZ registry data for clinical trials. Also, we performed our methods in 4 stages: Identifying studies, Selection of Studies, Collating Studies, Reporting results.
Results: Results are variable. Some studies have shown the effectiveness of ivermectin, others have not. Furthermore, some studies show that a combination of ivermectin with other drugs is useful. 
Conclusion: Overall, we believe the reason ivermectin is useful is that it goes back to its origin, which is soil. Our theory and hypothesis is that if the coronavirus, created by man or by nature, can generally be treated with nature, that is, the soil. The interesting thing is that today we know that ivermectin is effective in the fight against the coronavirus. In fact, other drugs like teicoplanin, cyclosporine and rapamycin that are effective against the coronavirus have come from the soil. We hope that this article has been able to take a step in finding a corona drug, InshaAllah.
DOI: 10.17632/yj333czkbw
title: Gastric Emptying During Labor at Term: Non-inferiority Clinical Trial

description: Data collected for https://clinicaltrials.gov/ct2/show/NCT03280706
DOI: 10.17632/zm7hs9cpkv
title: Forming Textured Hydrophobic Surface Coatings via Mixed Wax Emulsion Impregnation and Drying of Poplar Wood

description: Some original data and video are provided.
DOI: 10.17632/2b9n96k8vh
title: Data for “Educational mobility and older adults’ working memory updating ability: association and role of resilience.”

description: Previous research has found extensive evidence that a low socioeconomic status (SES), including a low parental educational level, during childhood is associated with relatively poor cognitive functioning, specifically executive functions. However, there is a lack of research addressing the questions whether extent of upward educational mobility is associated with working memory updating (WMU) ability, one of the most important components of executive functions, and whether resilience plays a role in this association.

The data concern the results of two studies addressing these questions. In Study 1, 180 Chinese older adults with different levels of educational mobility  (downward, zero, or upward) performed a task assessing WMU ability. Study 2 examined 130 Chinese older adults who all had experienced upward educational mobility, as defined by a higher education level for the individual than his/her parents. These individuals again performed a WMU task and completed a resilience questionnaire. Study 1 revealed a positive association between extent of educational mobility and performance on the WMU task. Study 2 revealed highly significant associations between WMU task performance, resilience, and degree of upward educational mobility.

These results were discussed in terms of possible causal directions of the association between the variables and possible implications for interventions that aim to enhance upward socioeconomic mobility and cognitive functioning at older ages.

The data files concern two SPSS data files, one for Study 1 and one for Study 2, containing pre-processed data. The data consist of each participant’s score on the outcome measure for each of the demographic and socioeconomic variables, the resilience questionnaire (Connor-Davidson Resilience Scale), and working memory updating tasks (two versions of a running memory task with different stimulus-presentation times). These scores were used in correlational and regression analyses, and exploratory mediation and modulation analyses, to assess the relation between the educational (mobility) level, resilience, and WMU ability variables, as described in the target article. The meaning of each column in the data file is described under the tap Variable View --> Label. The raw data of the running memory tasks (in eprime format) on which the corresponding pre-processed data are base are available from the corresponding author upon request.
DOI: 10.17632/2snz29ycgb
title: GCA-Biological Fe(II) and As(III) Oxidation Immobilizes Arsenic in Micro-oxic Environments

description: the objectives of this study were as follows: (i) to discern the effect of arsenic speciation on the abundance and distribution of microaerophilic FeOB, (ii) to investigate microaerophilic microbial Fe(II) oxidation processes and the products of arsenic immobilization, and (iii) to explore the mechanism of As(III) and As(V) immobilization during microaerophilic microbial Fe(II) oxidation in micro-oxic paddy soils. Soil samples from a paddy field in southern China were used as the inoculum to enrich microaerophilic FeOB using gradient tubes with FeS as the Fe(II) source. The cell growth, Fe(II) oxidation, and chemical speciation of arsenic were determined, and the biogenic minerals were characterized using Mössbauer spectroscopy and X-ray photoelectron spectroscopy (XPS). The changes in the composition and abundance of the microbial community caused by different treatments were profiled over time using 16S rRNA gene-based high-throughput sequencing. Furthermore, the microbial As(III) oxidase genes associated with the different treatments were examined quantitatively in real-time (qPCR) to evaluate the microbial As(III) oxidation.The raw data.xlsx contains the all raw data from Figure 1 to Figure 6 in manuscript. The genomic datasets are submitted to NCBI. You can use BioProject ID and accession number to download the data if you want (the ID and number are provided in manuscript and Raw data.xlsx).
DOI: 10.17632/52nk3426r9
title: Data for: Unusual Site of Presentation of Bronchogenic Cyst; A Case Report

description: Figure 1. A 7- year- old female with localized neck mass Figure 2. Well define midline cystic lesion within the anterior aspect of the lower neck and upper chest, extending from the lower pole from thyroid isthmus down to the manubrium sternum with no internal vascularity or intrathoracic extension. The thyroid gland is normal. Figure 3. Well defined subcutaneous superficial lower neck–upper chest mass lesion with an average of 50 Hounsfield units. The lesion extending from the level of the thyroid isthmus down to the manubrium of the sternum, No evidence of calcification, air-fluid level, fatty content or septation. Contrast was given and demonstrates very subtle wall enhancement. No soft tissue component, No intrathoracic or deep neck extension. no adjacent bony destruction Figure 4. Gross image of the mass during excision Figure 5. The cystic lesion containing whitish waxy material Figure 6. shows cyst wall lined by respiratory type epithelium (pseudostratified ciliated columnar epithelium) overlying fibrovascular connective tissue wall. H&E X40 Figure 7. shows cyst wall lined by respiratory type epithelium (pseudostratified ciliated columnar epithelium) overlying fibrovascular connective tissue wall. H&E X100 Figure 8. shows cyst wall lined by respiratory type epithelium. The sub epithelium shows congested blood vessels and lymphoid infiltrate. H&E X200.
DOI: 10.17632/63m8bp8zxc
title: Pheromone and pheromone-gene sequences from the marine ciliate, Euplotes crassus

description: A new set of eight full-length gene-size DNA molecules have been cloned and sequenced from the transcriptionally active macronuclear genome of interbreeding strains of the marine ciliate, Euplotes crassus. The determination of these new sequences reinforces the concept that the phylogenesis of E. crassus (and most likely of its closely related species, E. minuta and E. vannus) is characterized by a phenomenon of duplication of the Mendelian mat (mating-type) locus of the germinal micronuclear genome. The result of this duplication is that the E. crassus pheromone genes are subdivided into two subfamilies, one encoding 56-amino acid pheromones with eight conserved Cys residues and one encoding  45-amino acid pheromones with ten conserved Cys residues.
DOI: 10.17632/7z6hz6x9fr
title: RNAseq count data for Carson, Miranda et al., 2019

description: Natural brown adipose expansion and remission of hyperglycemia in obese SM/J mice