cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2010396
title: Data from: "Sequential phenotypic constraints on social information use"

description: <b>Data from: "Sequential phenotypic constraints on social information use" </b><br>Order of Acquisition Diffusion Analysis "OADA data.xlsx"Experiment: Number indicating the experimentTroop: the study troop (either J or L)Date: the date the diffusion took placeIndividual: the individual member of the troopAcquired, Applied, Exploited: whether or not information acquisition, application or exploitation occurred for that individual (1) or not (0). Note that all individuals acquired information (either personally or socially).acqOrder: the acquisition order for the particular experiment numberties: whether the individual acquired information at the same time as the individual before them<br>Attributes "attributes.txt":The individual level variables of the baboons in the analyses.BaboonID: the baboon IDtroop: the troop of the baboonboldness: the time (s) spent investigating the novel food in 2014sex: the sex of the baboon (M/F)relativeRank: the relative rank of the baboonage: the age (in years) of the baboon<br>Social information data "information.txt":A count of the number of times the indicated baboon (baboonID) acquired (infoAcquired), applied (infoApplied) and exploited (infoExploited) social information <br>Network data:Xtroop_dominance: a NxN matrix of directed dominance interactions by indicated troopXtroop_groom: a NxN matrix of directed grooming interactions by indicated troopXtroop_groupXind_5m chain: a NxK matrix of group memberships by the 5 m chain rule for the indicated troopXtroop_groupXind_10m: a NxK matrix of group memberships by the 10 m rule for the indicated troopXtroop_groupXind_NN: a NxK matrix of group memberships by the nearest neighbour rule for the indicated troop
DOI: 10.6084/m9.figshare.2010393
title: Endosymbionts from Pseudococcus longispinus mealybug

description: Draft genome data from two gammaproteobacterial endosymbionts from Pseudococcus longispinus mealybugs.
DOI: 10.6084/m9.figshare.2010390
title: Wolbachia from Maconellicoccus hirsutus mealybugs

description: Draft Wolbachia genome from Maconellicoccus hirsutus mealybug.
DOI: 10.6084/m9.figshare.2010393.v1
title: Endosymbionts from Pseudococcus longispinus mealybug

description: Draft genome data from two gammaproteobacterial endosymbionts from Pseudococcus longispinus mealybugs.
DOI: 10.6084/m9.figshare.2010444.v1
title: County level income

description: US County level income data from the US Census, 2013.
DOI: 10.6084/m9.figshare.2010390.v1
title: Wolbachia from Maconellicoccus hirsutus mealybugs

description: Draft Wolbachia genome from Maconellicoccus hirsutus mealybug.
DOI: 10.6084/m9.figshare.2010444.v2
title: County level income

description: US County level income data from the US Census, 2013.
DOI: 10.6084/m9.figshare.2010318
title: Ocean transport pathways to a World Heritage fringing coral reef: Ningaloo Reef, Western Australia

description: Mooring velocity profiles and wind data (PCA_currents_M2_spring.mat,PCA_currents_M2_summer.mat,Ningaloo_wind.mat); surface particle tracking model results (output_surface_2009_11-12IMOS.nc, output_surface_2010_3-5HYCOM.nc,output_surface_2010_5-7HYCOM.nc,output_surface_2010_9-11IMOS.nc); seasonal averaged current and temperature field (WAC_summer_1-61_IMOS.mat,WAC_winter_1-61_IMOS.mat);60 days backward particle tracking results(output_3D4_2009-11-12.nc,output_3D4_2010-3-5.nc,output_3D4_2010-5-7.nc,output_3D4_2010-9-11.nc);grouped 10 days backward particle tracking results (3Dsim4particle_pos-2009_11-12.mat,3Dsim4particle_pos-2010_3-5.mat,3Dsim4particle_pos-2010_5-7.mat,3Dsim4particle_pos-2010_9-11.mat);CARS09dataset(mld_cars2009a.nc,nitrate_cars2009.nc,temperature_cars2009a.nc,salinity_cars2009a.nc);DIffusion sensitivity test(Nodiff_2009-11-12_10m.nc,Yesdiff_2009-11-12_10m.nc);initialization time sensitivity test(Ningaloo_PT_20091118-20090918_Nodiff.nc,Ningaloo_PT_20091123-20090923_Nodiff.nc)<br>Hydrodynamic model outputs are two big to be uploaded to this repository, while reader can find the data from the link below: https://cloudstor.aarnet.edu.au/plus/index.php/s/MhCg7nhH5jEfDUG<br>
DOI: 10.6084/m9.figshare.2010444.v3
title: County level income

description: US County level income data from the US Census, 2013.
DOI: 10.6084/m9.figshare.2010258
title: Rotating Fan Simulation Tutorial Files

description: These files go with the youtube tutorial on creating a star ccm+ simulation of a propeller with rotating reference frames and periodic boundary conditions. The sim file, as well as the propeller file are included for reference in setting up the simulation. The java script and the batch files are included for reference for interfacing to a remote / supercomputer. The simulation is in no way validated, the physics, mesh, and boundary conditions all need to be worked on. This is for tutorial reference only. Wind tunnel data for the propeller geometry supplied can be found at<br>https://figshare.com/articles/Aerodynamic_Performance_Characterization_of_Leading_Edge_Protrusions_on_Small_Propellers/2009607<br>(diameter was 5.5 inches)<br>10.6084/m9.figshare.2009607 <br><br><br>The youtube tutorial links are:<br>https://www.youtube.com/watch?v=tqZm6wxqrWY<br>https://www.youtube.com/watch?v=66RWM07tZpc
DOI: 10.6084/m9.figshare.2010225
title: Transplant Experiments: Cytoscape data

description: Cytoscape data set from Nooten, S.S. & Andrew, N.R. (accepted) Transplant Experiments - a powerful method to study climate change impacts. Invertebrates and Global Climate Change (eds S. Johnson & H. Jones). Wiley-Blackwell.
DOI: 10.6084/m9.figshare.2010318.v1
title: Ocean transport pathways to a World Heritage fringing coral reef: Ningaloo Reef, Western Australia

description: Mooring velocity profiles and wind data
DOI: 10.6084/m9.figshare.2010225.v2
title: Transplant Experiments: Cytoscape data

description: Cytoscape data set from Nooten, S.S. & Andrew, N.R. (accepted) Transplant Experiments - a powerful method to study climate change impacts. Invertebrates and Global Climate Change (eds S. Johnson & H. Jones). Wiley-Blackwell.
DOI: 10.6084/m9.figshare.2010225.v1
title: Transplant Exoeriments: Cytoscape data

description: Cytoscape data set from Nooten, S.S. & Andrew, N.R. (accepted) Transplant Experiments - a powerful method to study climate change impacts. Invertebrates and Global Climate Change (eds S. Johnson & H. Jones). Wiley-Blackwell.
DOI: 10.6084/m9.figshare.2010318.v2
title: Ocean transport pathways to a World Heritage fringing coral reef: Ningaloo Reef, Western Australia

description: Mooring velocity profiles and wind data (PCA_currents_M2_spring.mat,PCA_currents_M2_summer.mat,Ningaloo_wind.mat); surface particle tracking model results (output_surface_2009_11-12IMOS.nc, output_surface_2010_3-5HYCOM.nc,output_surface_2010_5-7HYCOM.nc,output_surface_2010_9-11IMOS.nc); seasonal averaged current and temperature field (WAC_summer_1-61_IMOS.mat,WAC_winter_1-61_IMOS.mat);60 days backward particle tracking results(output_3D4_2009-11-12.nc,output_3D4_2010-3-5.nc,output_3D4_2010-5-7.nc,output_3D4_2010-9-11.nc);grouped 10 days backward particle tracking results (3Dsim4particle_pos-2009_11-12.mat,3Dsim4particle_pos-2010_3-5.mat,3Dsim4particle_pos-2010_5-7.mat,3Dsim4particle_pos-2010_9-11.mat);CARS09dataset(mld_cars2009a.nc,nitrate_cars2009.nc,temperature_cars2009a.nc,salinity_cars2009a.nc);DIffusion sensitivity test(Nodiff_2009-11-12_10m.nc,Yesdiff_2009-11-12_10m.nc);initialization time sensitivity test(Ningaloo_PT_20091118-20090918_Nodiff.nc,Ningaloo_PT_20091123-20090923_Nodiff.nc)<br>Hydrodynamic model outputs are two big to be uploaded to this repository, while reader can find the data from the link below: https://cloudstor.aarnet.edu.au/plus/index.php/s/MhCg7nhH5jEfDUG<br>
DOI: 10.6084/m9.figshare.2010249.v3
title: Restoring functionally diverse communities enhances invasion resistance in a freshwater wetland

description: 1. Understanding how plant communities reassemble is particularly relevant when invaders are part of the species pool and can compromise restoration or conservation goals. If initial species composition has a lasting impact on community dynamics, it may be possible to enhance biotic resistance to invasion, particularly through diversity effects, by manipulating early community composition. Diversity effects have been investigated much less in wetlands than in uplands.2. We conducted a large plant community restoration experiment in a freshwater wetland to investigate species and functional diversity effects on biotic resistance to invasion during early community assembly. The wetland was under propagule pressure mostly from Phragmites australis (common reed), but all species not sown in this experiment that established in the plots were treated as ‘invaders’, whether exotic or native. We used a two-step model selection approach and a diversity-interaction model framework to test hypotheses about the contribution to invasion success of abiotic conditions, species richness, as well as functional group richness, identity and pairwise interactions, providing a rare test of diversity effect against multiple invaders in wetlands.3. Twenty species invaded the plots. They were grouped for analysis to evaluate the overall resistance of resident communities. The three main invaders, P. australis and two native taxa (Salix spp., Populus deltoides), were also analysed separately. Diversity–interaction models revealed invader–specific responses. Functional group identity determined resistance to P. australis, whereas pairwise interactions between functional groups explained resistance to Salix spp. Both effects were retained when grouping all invaders. Resistance to P. deltoides was determined by abiotic conditions.4. The contribution of specific functional groups varied with invader. Annuals and clonal perennials explained resistance to P. australis, suggesting priority and limiting similarity effects. Interactions, when significant, mostly included fast-growing annuals. When considering all invaders, identity effects were detected for all functional groups.5. Synthesis. Diversity effects on invasion resistance vary with invaders in early assembly of restored wetland communities. Restoring functionally diverse communities provides resistance against multiple invaders. Consistent responses between this field experiment and previous pot experiments with the same species suggest that results are robust enough to inform management.<br>
DOI: 10.6084/m9.figshare.2010249
title: Restoring functionally diverse communities enhances invasion resistance in a freshwater wetland

description: 1. Understanding how plant communities reassemble is particularly relevant when invaders are part of the species pool and can compromise restoration or conservation goals. If initial species composition has a lasting impact on community dynamics, it may be possible to enhance biotic resistance to invasion, particularly through diversity effects, by manipulating early community composition. Diversity effects have been investigated much less in wetlands than in uplands.2. We conducted a large plant community restoration experiment in a freshwater wetland to investigate species and functional diversity effects on biotic resistance to invasion during early community assembly. The wetland was under propagule pressure mostly from Phragmites australis (common reed), but all species not sown in this experiment that established in the plots were treated as ‘invaders’, whether exotic or native. We used a two-step model selection approach and a diversity-interaction model framework to test hypotheses about the contribution to invasion success of abiotic conditions, species richness, as well as functional group richness, identity and pairwise interactions, providing a rare test of diversity effect against multiple invaders in wetlands.3. Twenty species invaded the plots. They were grouped for analysis to evaluate the overall resistance of resident communities. The three main invaders, P. australis and two native taxa (Salix spp., Populus deltoides), were also analysed separately. Diversity–interaction models revealed invader–specific responses. Functional group identity determined resistance to P. australis, whereas pairwise interactions between functional groups explained resistance to Salix spp. Both effects were retained when grouping all invaders. Resistance to P. deltoides was determined by abiotic conditions.4. The contribution of specific functional groups varied with invader. Annuals and clonal perennials explained resistance to P. australis, suggesting priority and limiting similarity effects. Interactions, when significant, mostly included fast-growing annuals. When considering all invaders, identity effects were detected for all functional groups.5. Synthesis. Diversity effects on invasion resistance vary with invaders in early assembly of restored wetland communities. Restoring functionally diverse communities provides resistance against multiple invaders. Consistent responses between this field experiment and previous pot experiments with the same species suggest that results are robust enough to inform management.<br>
DOI: 10.6084/m9.figshare.2010318.v3
title: Ocean transport pathways to a World Heritage fringing coral reef: Ningaloo Reef, Western Australia

description: Mooring velocity profiles and wind data (PCA_currents_M2_spring.mat,PCA_currents_M2_summer.mat,Ningaloo_wind.mat); surface particle tracking model results (output_surface_2009_11-12IMOS.nc, output_surface_2010_3-5HYCOM.nc,output_surface_2010_5-7HYCOM.nc,output_surface_2010_9-11IMOS.nc); seasonal averaged current and temperature field (WAC_summer_1-61_IMOS.mat,WAC_winter_1-61_IMOS.mat);60 days backward particle tracking results(output_3D4_2009-11-12.nc,output_3D4_2010-3-5.nc,output_3D4_2010-5-7.nc,output_3D4_2010-9-11.nc);grouped 10 days backward particle tracking results (3Dsim4particle_pos-2009_11-12.mat,3Dsim4particle_pos-2010_3-5.mat,3Dsim4particle_pos-2010_5-7.mat,3Dsim4particle_pos-2010_9-11.mat);CARS09dataset(mld_cars2009a.nc,nitrate_cars2009.nc,temperature_cars2009a.nc,salinity_cars2009a.nc);DIffusion sensitivity test(Nodiff_2009-11-12_10m.nc,Yesdiff_2009-11-12_10m.nc);initialization time sensitivity test(Ningaloo_PT_20091118-20090918_Nodiff.nc,Ningaloo_PT_20091123-20090923_Nodiff.nc)<br>Hydrodynamic model outputs are two big to be uploaded to this repository, while reader can find the data from the link below: https://cloudstor.aarnet.edu.au/plus/index.php/s/MhCg7nhH5jEfDUG<br>
DOI: 10.6084/m9.figshare.2010111
title: ENTPRISE data

description: ENTPRISE is a method for predicting human disease associated amino acid mutations from sequence entropy and predicted protein structures<br>
DOI: 10.6084/m9.figshare.2010117
title: RLetters Application Note Figure Data

description: This data includes all of the results produced by RLetters (https://demo.rletters.net/) used to create Figure 2 in the <i>PLoS ONE</i> paper Pence, C.H. "RLetters: A Web-Based Application for Text Analysis of Journal Articles." DOI: 10.1371/journal.pone.0146004.<br>In addition, at one point I cite a collocation analysis in support of a claim, the original data for which are also included here.<br>To regenerate this data from the RLetters Demo installation:<br>- Access the RLetters Demo- Create two datasets, one containing all of <i>PLoS Biology</i> (filter -&gt; <i>PLoS Biology</i> -&gt; Save Dataset) and one containing all of <i>PLoS Computational Biology.</i>- Run a Craig Zeta analysis, linking those two datasets.<br>For the collocation analysis:<br>- Run a collocation analysis on the <i>PLoS Computational Biology</i> dataset, including the first 100 collocations, and using the "Parts of speech" analysis method.
DOI: 10.6084/m9.figshare.2010174.v1
title: MOOCSciNum-final-msaababou@gmail.pdf

description: c'est un devoir d'initiation a la recherche numerique
DOI: 10.6084/m9.figshare.2010318.v5
title: Ocean transport pathways to a World Heritage fringing coral reef: Ningaloo Reef, Western Australia

description: Mooring velocity profiles and wind data (PCA_currents_M2_spring.mat,PCA_currents_M2_summer.mat,Ningaloo_wind.mat); surface particle tracking model results (output_surface_2009_11-12IMOS.nc, output_surface_2010_3-5HYCOM.nc,output_surface_2010_5-7HYCOM.nc,output_surface_2010_9-11IMOS.nc); seasonal averaged current and temperature field (WAC_summer_1-61_IMOS.mat,WAC_winter_1-61_IMOS.mat);60 days backward particle tracking results(output_3D4_2009-11-12.nc,output_3D4_2010-3-5.nc,output_3D4_2010-5-7.nc,output_3D4_2010-9-11.nc);grouped 10 days backward particle tracking results (3Dsim4particle_pos-2009_11-12.mat,3Dsim4particle_pos-2010_3-5.mat,3Dsim4particle_pos-2010_5-7.mat,3Dsim4particle_pos-2010_9-11.mat);CARS09dataset(mld_cars2009a.nc,nitrate_cars2009.nc,temperature_cars2009a.nc,salinity_cars2009a.nc);DIffusion sensitivity test(Nodiff_2009-11-12_10m.nc,Yesdiff_2009-11-12_10m.nc);initialization time sensitivity test(Ningaloo_PT_20091118-20090918_Nodiff.nc,Ningaloo_PT_20091123-20090923_Nodiff.nc)<br>Hydrodynamic model outputs are two big to be uploaded to this repository, while reader can find the data from the link below: https://cloudstor.aarnet.edu.au/plus/index.php/s/MhCg7nhH5jEfDUG<br>
DOI: 10.6084/m9.figshare.2010099
title: nHd.2.3.abv500.fna.gz

description: <pre>Reads were assembled as single-end with CLC to calculate the insert size distributions of the libraries and check for contaminants. Insert size distributions are calculated by mapping the reads back to the assembly with CLC. The MP library insert distribution wasn't normally distributed. The single-end assembly is checked for contamination using the blobtools software package which creates a TAGC plot. Inspection of the TAGC plot revealed multiple contaminations with distinct coverage and GC content that did not have a reference genome in public databases. The PE reads were normalised with one-pass khmer and were assembled with Velvet using a k-mer size of 55. Contaminants in the Velvet assembly were identified based on the coverage and GC of the scaffolds. The non-normalised reads were mapped to the assembly using CLC and reads were removed if either pair mapped to a contig identified as contaminant. The process was repeated two more times since newly assembled contaminants could be identified. Gaps were filled in the final assembly using GapFiller. Finally the MP library was used to scaffold the gap-filled assembly with SSPACE, accepting only the information from reads mapping 2 kb from the ends of the scaffolds. The final assembly spans 140 megabases (Mb) with median coverage of 86X.</pre>
DOI: 10.6084/m9.figshare.2010075
title: All raw and partly cooked data from ANT tests with simultaneous Eye Tracking

description: This zip file contains individual logs of 30+ sessions of Attention Network Tests for primarily two users, and one session with another user and a "dummy run" with no required action.<br>The files are all CSV files:<br>-ant- files are the ANT experimental logs-track- are output from the eye tracker-flip- are logfiles with experimental timings (PsychoPy)<br>See also https://github.com/baekgaard/peyetribe for the eye tracking format. The ANT test will appear at https://github.com/baekgaard/ant
DOI: 10.6084/m9.figshare.2010099.v1
title: nHd.2.3.abv500.fna.gz

description: <pre>Reads were assembled as single-end with CLC to calculate the insert size distributions of the libraries and check for contaminants. Insert size distributions are calculated by mapping the reads back to the assembly with CLC. The MP library insert distribution wasn't normally distributed. The single-end assembly is checked for contamination using the blobtools software package which creates a TAGC plot. Inspection of the TAGC plot revealed multiple contaminations with distinct coverage and GC content that did not have a reference genome in public databases. The PE reads were normalised with one-pass khmer and were assembled with Velvet using a k-mer size of 55. Contaminants in the Velvet assembly were identified based on the coverage and GC of the scaffolds. The non-normalised reads were mapped to the assembly using CLC and reads were removed if either pair mapped to a contig identified as contaminant. The process was repeated two more times since newly assembled contaminants could be identified. Gaps were filled in the final assembly using GapFiller. Finally the MP library was used to scaffold the gap-filled assembly with SSPACE, accepting only the information from reads mapping 2 kb from the ends of the scaffolds. The final assembly spans 140 megabases (Mb) with median coverage of 86X.</pre>
DOI: 10.6084/m9.figshare.2010174.v2
title: MOOCSciNum-final-msaababou@gmail.pdf

description: c'est un devoir d'initiation a la recherche numerique
DOI: 10.6084/m9.figshare.2010318.v4
title: Ocean transport pathways to a World Heritage fringing coral reef: Ningaloo Reef, Western Australia

description: Mooring velocity profiles and wind data (PCA_currents_M2_spring.mat,PCA_currents_M2_summer.mat,Ningaloo_wind.mat); surface particle tracking model results (output_surface_2009_11-12IMOS.nc, output_surface_2010_3-5HYCOM.nc,output_surface_2010_5-7HYCOM.nc,output_surface_2010_9-11IMOS.nc); seasonal averaged current and temperature field (WAC_summer_1-61_IMOS.mat,WAC_winter_1-61_IMOS.mat);60 days backward particle tracking results(output_3D4_2009-11-12.nc,output_3D4_2010-3-5.nc,output_3D4_2010-5-7.nc,output_3D4_2010-9-11.nc);grouped 10 days backward particle tracking results (3Dsim4particle_pos-2009_11-12.mat,3Dsim4particle_pos-2010_3-5.mat,3Dsim4particle_pos-2010_5-7.mat,3Dsim4particle_pos-2010_9-11.mat);CARS09dataset(mld_cars2009a.nc,nitrate_cars2009.nc,temperature_cars2009a.nc,salinity_cars2009a.nc);DIffusion sensitivity test(Nodiff_2009-11-12_10m.nc,Yesdiff_2009-11-12_10m.nc);initialization time sensitivity test(Ningaloo_PT_20091118-20090918_Nodiff.nc,Ningaloo_PT_20091123-20090923_Nodiff.nc)<br>Hydrodynamic model outputs are two big to be uploaded to this repository, while reader can find the data from the link below: https://cloudstor.aarnet.edu.au/plus/index.php/s/MhCg7nhH5jEfDUG<br>
DOI: 10.6084/m9.figshare.2009988
title: Grass pollen surface ornamentation: a review of morphotypes and taxonomic utility

description: Database of grass pollen surface ornamentation
DOI: 10.6084/m9.figshare.2010066
title: prediction of protein protein interaction (data sets & code)

description: "Predicting protein-protein interactions via multivariate mutual information of protein sequences". protein protein interaction (data sets & code) for our paper.It includes 7 data sets and feature extraction algorithm
DOI: 10.6084/m9.figshare.2010075.v1
title: All raw and partly cooked data from ANT tests with simultaneous Eye Tracking

description: This zip file contains individual logs of 30+ sessions of Attention Network Tests for primarily two users, and one session with another user and a "dummy run" with no required action.<br>The files are all CSV files:<br>-ant- files are the ANT experimental logs-track- are output from the eye tracker-flip- are logfiles with experimental timings (PsychoPy)<br>See also https://github.com/baekgaard/peyetribe for the eye tracking format. The ANT test will appear at https://github.com/baekgaard/ant
DOI: 10.6084/m9.figshare.2010108.v1
title: GRID release 2015-12-14

description: Fifth public release of GRID- Added directorates, programs and institutes from the National Science Foundation- QA tasks to review and fix allocation of Fundref IDs
DOI: 10.6084/m9.figshare.2009985
title: Illness Perception Article 2016

description: Illness perception in gestational trophoblastic disease patients in a hospital in Italy<br>
DOI: 10.6084/m9.figshare.2009985.v1
title: Illness Perception Article 2016

description: Illness perception in gestational trophoblastic disease patients in a hospital in Italy<br>
DOI: 10.6084/m9.figshare.2009988.v1
title: Grass pollen surface ornamentation: a review of morphotypes and taxonomic utility

description: Database of grass pollen surface ornamentation