cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11841858
title: Data and R Scripts from Linking microbial communities to ecosystem functions: what we can learn from genotype–phenotype mapping in organisms

description: Directory containing raw data and R scripts to recreate the analysis.
DOI: 10.6084/m9.figshare.11841813
title: Cortisol_PFAS_Supplemental_materials.docx

description: Supplemental materiales, Appendix tables.Perfluoroalkyl substance exposure early in pregnancy was negatively associated with late pregnancy cortisone levels<br>
DOI: 10.6084/m9.figshare.11841813.v1
title: Cortisol_PFAS_Supplemental_materials.docx

description: Supplemental materiales, Appendix tables.Perfluoroalkyl substance exposure was negatively associated with cortisone levels in pregnancy: The Odense Child Cohort.<br>
DOI: 10.6084/m9.figshare.11841813.v3
title: Cortisol_PFAS_Supplemental_materials.docx

description: Supplemental materiales, Appendix tables.Perfluoroalkyl substance exposure early in pregnancy was negatively associated with late pregnancy cortisone levels<br>
DOI: 10.6084/m9.figshare.11841804
title: Supplementary tables from Experimental manipulation of selfish genetic elements links genes to microbial community function

description: Microbial communities underpin the Earth's biological and geochemical processes, but their complexity hampers understanding. Motivated by the challenge of diversity and the need to forge ways of capturing dynamical behaviour connecting genes to function, biologically independent experimental communities comprising hundreds of microbial genera were established from garden compost and propagated on nitrogen-limited minimal medium with cellulose (paper) as sole carbon source. After 1 year of bi-weekly transfer, communities retained hundreds of genera. To connect genes to function, we used a simple experimental manipulation that involved the periodic collection of selfish genetic elements (SGEs) from separate communities, followed by pooling and redistribution across communities. The treatment was predicted to promote amplification and dissemination of SGEs and thus horizontal gene transfer. Confirmation came from comparative metagenomics, which showed the substantive movement of ecologically significant genes whose dynamic across space and time could be followed. Enrichment of genes implicated in nitrogen metabolism, and particularly ammonification, prompted biochemical assays that revealed a measurable impact on community function. Our simple experimental strategy offers a conceptually new approach for unravelling dynamical processes affecting microbial community function.This article is part of the theme issue ‘Conceptual challenges in microbial community ecology’.
DOI: 10.6084/m9.figshare.11841813.v2
title: Cortisol_PFAS_Supplemental_materials.docx

description: Supplemental materiales, Appendix tables.Perfluoroalkyl substance exposure was negatively associated with cortisone levels in pregnancy: The Odense Child Cohort.<br>
DOI: 10.6084/m9.figshare.11841804.v2
title: Supplementary tables from Experimental manipulation of selfish genetic elements links genes to microbial community function

description: Microbial communities underpin the Earth's biological and geochemical processes, but their complexity hampers understanding. Motivated by the challenge of diversity and the need to forge ways of capturing dynamical behaviour connecting genes to function, biologically independent experimental communities comprising hundreds of microbial genera were established from garden compost and propagated on nitrogen-limited minimal medium with cellulose (paper) as sole carbon source. After 1 year of bi-weekly transfer, communities retained hundreds of genera. To connect genes to function, we used a simple experimental manipulation that involved the periodic collection of selfish genetic elements (SGEs) from separate communities, followed by pooling and redistribution across communities. The treatment was predicted to promote amplification and dissemination of SGEs and thus horizontal gene transfer. Confirmation came from comparative metagenomics, which showed the substantive movement of ecologically significant genes whose dynamic across space and time could be followed. Enrichment of genes implicated in nitrogen metabolism, and particularly ammonification, prompted biochemical assays that revealed a measurable impact on community function. Our simple experimental strategy offers a conceptually new approach for unravelling dynamical processes affecting microbial community function.This article is part of the theme issue ‘Conceptual challenges in microbial community ecology’.
DOI: 10.6084/m9.figshare.11841774
title: Appendix S2 from Palm fruit colours are linked to the broad-scale distribution and diversification of primate colour vision systems

description: Palm and fig data used in this study
DOI: 10.6084/m9.figshare.11841753
title: MFAS Detection Times from Co-occurrence of beaked whale strandings and naval sonar in the Mariana Islands, Western Pacific

description: Mid-frequency active sonar (MFAS), used for antisubmarine warfare (ASW), has been associated with multiple beaked whale (BW) mass stranding events. Multinational naval ASW exercises have used MFAS offshore of the Mariana Archipelago semi-annually since 2006. We report BW and MFAS acoustic activity near the islands of Saipan and Tinian from March 2010 to November 2014. Signals from Cuvier's (<i>Ziphius cavirostris)</i> and Blainville's beaked whales (<i>Mesoplodon densirostris</i>), and a third unidentified BW species were detected throughout the recording period. Both recorders documented MFAS on 21 August 2011 before two Cuvier's beaked whales stranded on 22–23 August 2011. We compared the history of known naval operations and BW strandings from the Mariana Archipelago to consider potential threats to BW populations. Eight BW stranding events between June 2006 and January 2019 each included one to three animals. Half of these strandings occurred during, or within 6 days after naval activities, and this co-occurrence is highly significant. We highlight strandings of individual BWs can be associated with ASW, and emphasize the value of ongoing passive acoustic monitoring, especially for beaked whales that are difficult to visually detect at sea. We strongly recommend more visual monitoring efforts, at sea and along coastlines, for stranded cetaceans before, during and after naval exercises.
DOI: 10.6084/m9.figshare.11841774.v2
title: Appendix S1 from Palm fruit colours are linked to the broad-scale distribution and diversification of primate colour vision systems

description: Primate data used in this study
DOI: 10.6084/m9.figshare.11841774.v3
title: Appendix S2 from Palm fruit colours are linked to the broad-scale distribution and diversification of primate colour vision systems

description: Palm and fig data used in this study
DOI: 10.6084/m9.figshare.11841753.v3
title: Beaked whale Times from Co-occurrence of beaked whale strandings and naval sonar in the Mariana Islands, Western Pacific

description: Mid-frequency active sonar (MFAS), used for antisubmarine warfare (ASW), has been associated with multiple beaked whale (BW) mass stranding events. Multinational naval ASW exercises have used MFAS offshore of the Mariana Archipelago semi-annually since 2006. We report BW and MFAS acoustic activity near the islands of Saipan and Tinian from March 2010 to November 2014. Signals from Cuvier's (<i>Ziphius cavirostris)</i> and Blainville's beaked whales (<i>Mesoplodon densirostris</i>), and a third unidentified BW species were detected throughout the recording period. Both recorders documented MFAS on 21 August 2011 before two Cuvier's beaked whales stranded on 22–23 August 2011. We compared the history of known naval operations and BW strandings from the Mariana Archipelago to consider potential threats to BW populations. Eight BW stranding events between June 2006 and January 2019 each included one to three animals. Half of these strandings occurred during, or within 6 days after naval activities, and this co-occurrence is highly significant. We highlight strandings of individual BWs can be associated with ASW, and emphasize the value of ongoing passive acoustic monitoring, especially for beaked whales that are difficult to visually detect at sea. We strongly recommend more visual monitoring efforts, at sea and along coastlines, for stranded cetaceans before, during and after naval exercises.
DOI: 10.6084/m9.figshare.11841774.v5
title: Appendix S1 from Palm fruit colours are linked to the broad-scale distribution and diversification of primate colour vision systems

description: Primate data used in this study
DOI: 10.6084/m9.figshare.11841753.v6
title: MFAS Detection Times from Co-occurrence of beaked whale strandings and naval sonar in the Mariana Islands, Western Pacific

description: Mid-frequency active sonar (MFAS), used for antisubmarine warfare (ASW), has been associated with multiple beaked whale (BW) mass stranding events. Multinational naval ASW exercises have used MFAS offshore of the Mariana Archipelago semi-annually since 2006. We report BW and MFAS acoustic activity near the islands of Saipan and Tinian from March 2010 to November 2014. Signals from Cuvier's (<i>Ziphius cavirostris)</i> and Blainville's beaked whales (<i>Mesoplodon densirostris</i>), and a third unidentified BW species were detected throughout the recording period. Both recorders documented MFAS on 21 August 2011 before two Cuvier's beaked whales stranded on 22–23 August 2011. We compared the history of known naval operations and BW strandings from the Mariana Archipelago to consider potential threats to BW populations. Eight BW stranding events between June 2006 and January 2019 each included one to three animals. Half of these strandings occurred during, or within 6 days after naval activities, and this co-occurrence is highly significant. We highlight strandings of individual BWs can be associated with ASW, and emphasize the value of ongoing passive acoustic monitoring, especially for beaked whales that are difficult to visually detect at sea. We strongly recommend more visual monitoring efforts, at sea and along coastlines, for stranded cetaceans before, during and after naval exercises.
DOI: 10.6084/m9.figshare.11841708
title: Experimental data from Hippocampal-dependent appetitive control is impaired by experimental exposure to a Western-style diet

description: Animals fed a Western-style diet (WS-diet) demonstrate rapid impairments in hippocampal function and poorer appetitive control. We examined if this also occurs in humans. One-hundred and ten healthy lean adults were randomized to either a one-week WS-diet intervention or a habitual-diet control group. Measures of hippocampal-dependent learning and memory (HDLM) and of appetitive control were obtained pre- and post-intervention. HDLM was retested at three-week follow-up. Relative to controls, HDLM performance declined in the WS-diet group (<i>d</i> = 0.43), but was not different at follow-up. Appetitive control also declined in the WS-diet group (<i>d</i> = 0.47) and this was strongly correlated with HDLM decline (<i>d</i> = 1.01). These findings demonstrate that a WS-diet can rapidly impair appetitive control in humans—an effect that could promote overeating in consumers of a WS-diet. The study also suggests a functional role for the hippocampus in appetitive control and provides new evidence for the adverse neurocognitive effects of a WS-diet.
DOI: 10.6084/m9.figshare.11841708.v1
title: Experimental data from Hippocampal-dependent appetitive control is impaired by experimental exposure to a Western-style diet

description: Animals fed a Western-style diet (WS-diet) demonstrate rapid impairments in hippocampal function and poorer appetitive control. We examined if this also occurs in humans. One-hundred and ten healthy lean adults were randomized to either a one-week WS-diet intervention or a habitual-diet control group. Measures of hippocampal-dependent learning and memory (HDLM) and of appetitive control were obtained pre- and post-intervention. HDLM was retested at three-week follow-up. Relative to controls, HDLM performance declined in the WS-diet group (<i>d</i> = 0.43), but was not different at follow-up. Appetitive control also declined in the WS-diet group (<i>d</i> = 0.47) and this was strongly correlated with HDLM decline (<i>d</i> = 1.01). These findings demonstrate that a WS-diet can rapidly impair appetitive control in humans—an effect that could promote overeating in consumers of a WS-diet. The study also suggests a functional role for the hippocampus in appetitive control and provides new evidence for the adverse neurocognitive effects of a WS-diet.
DOI: 10.6084/m9.figshare.11841705
title: Supporting Information table from Evaluation of host effects on ectomycorrhizal fungal community compositions in a forested landscape in northern Japan

description: Table S1
DOI: 10.6084/m9.figshare.11841705.v2
title: Supporting Information table from Evaluation of host effects on ectomycorrhizal fungal community compositions in a forested landscape in northern Japan

description: Table S1
DOI: 10.6084/m9.figshare.11841669
title: Supplementary tables

description: contains supplementary tables for 'Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation'
DOI: 10.6084/m9.figshare.11841615
title: data.xlsx

description: The data details the built-up composition of the southern region of Mumbai at 300*300 m resolution. each grid is classified as a zone based on development rules and the composition. The population and built-up compactness is calculated and added as attributes.
DOI: 10.6084/m9.figshare.11841669.v1
title: Supplementary tables

description: contains supplementary tables for 'Highly diverse Asgard archaea participate in organic matter degradation in coastal sediments'
DOI: 10.6084/m9.figshare.11841669.v3
title: Supplementary tables

description: contains supplementary tables for 'Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation'
DOI: 10.6084/m9.figshare.11841669.v2
title: Supplementary tables

description: contains supplementary tables for 'Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation'
DOI: 10.6084/m9.figshare.11841594
title: Supplementary Material for: Ambulatory Assessment Characteristics Predict the Clinical Course of Premenstrual Dysphoric Disorder

description: Medicine
DOI: 10.6084/m9.figshare.11841594.v1
title: Supplementary Material for: Ambulatory Assessment Characteristics Predict the Clinical Course of Premenstrual Dysphoric Disorder

description: Medicine
DOI: 10.6084/m9.figshare.11841615.v1
title: data.xlsx

description: The data details the built-up composition of the southern region of Mumbai at 300*300 m resolution. each grid is classified as a zone based on development rules and the composition. The population and built-up compactness is calculated and added as attributes.
DOI: 10.6084/m9.figshare.11841588
title: Supplementary data from Coiro, Martinez, Upchurch & Doyle.

description: Datasets from Coiro et al. <br>Includes:<br>- Nexus files used for the analyses (annotated and simple format, .nex files);- Tree files used for the RoguePlots analyses (.t files);- Tabulated results of the RoguePlots analyses (.txt files). <br>
DOI: 10.6084/m9.figshare.11841615.v3
title: data.xlsx

description: The data details the built-up composition of the southern region of Mumbai at 300*300 m resolution. each grid is classified as a zone based on development rules and the composition. The population and built-up compactness is calculated and added as attributes.
DOI: 10.6084/m9.figshare.11841615.v2
title: data.xlsx

description: The data details the built-up composition of the southern region of Mumbai at 300*300 m resolution. each grid is classified as a zone based on development rules and the composition. The population and built-up compactness is calculated and added as attributes.
DOI: 10.24376/rd.sgul.11841546
title: Newcotiana stakeholder interview topic guide

description: Topic guide for interviews with tobacco farmers, agronomists, policymakers and researchers on attitudes towards new plant breeding techniques and molecular farming.<br>
DOI: 10.24376/rd.sgul.11841546.v1
title: Newcotiana stakeholder interview topic guide

description: Topic guide for interviews with tobacco farmers, agronomists, policymakers and researchers on attitudes towards new plant breeding techniques and molecular farming.<br>
DOI: 10.6084/m9.figshare.11841519
title: Combined action of <i>Lavandula angustifolia</i> Miller essential oil and gamma irradiation treatment on some biological aspects of the Mediterranean flour moth <i>Ephestia kuehniella</i> (Zeller)

description: This study evaluated the effectiveness of an integrated pest management intervention for controlling the Mediterranean flour moth <i>Ephestia kuehniella</i> Zeller using gamma radiation and <i>Lavandula angustifolia</i> Moench essential oil as feasible alternatives to synthetic insecticides. The mortality rate of <i>E. kuehniella</i> larvae treated with either gamma radiation or <i>L. angustifolia</i> essential oil separately was much lower than the mortality rate after the combined treatment. High synergistic effects (Synergism = 0.1) were observed in all dosages, especially using 1.14 and 1.7 µL/L air of <i>L. angustifolia</i> in combination with 200 Gy of gamma radiation, which was more effective than the other treatments. The results of the antifeedant test indicated that the relative growth rate and relative consumption rate in fumigated (0.021 and 0.021 mg/mg/day) and irradiated (0.026 and 0.049 mg/mg/day) larvae were significantly lower than those of non-treated ones (0.035 and 0.093 mg/mg/day). The results also showed a significant increase in the efficacy of conversion of ingested food and feeding deterrent index due to both irradiation and essential oil. The experiments showed that the known insecticidal effectiveness of essential oils can be enhanced by preliminary irradiation.
DOI: 10.6084/m9.figshare.11841504
title: Body Mass Index and Polycystic Ovary Syndrome: A Two-sample Bidirectional Mendelian Randomization Study

description: <i>Observational studies have shown a link between elevated body mass index (BMI) and the risk of polycystic ovary syndrome (PCOS). While Mendelian randomization (MR) studies in Europeans have suggested a causal role of increased BMI in PCOS, whether the same role is suggested in Asians has yet to be investigated. We used MR studies to infer causal effects using genetic data from East Asian populations.</i><i> </i>
DOI: 10.6084/m9.figshare.11841519.v1
title: Combined action of <i>Lavandula angustifolia</i> Miller essential oil and gamma irradiation treatment on some biological aspects of the Mediterranean flour moth <i>Ephestia kuehniella</i> (Zeller)

description: This study evaluated the effectiveness of an integrated pest management intervention for controlling the Mediterranean flour moth <i>Ephestia kuehniella</i> Zeller using gamma radiation and <i>Lavandula angustifolia</i> Moench essential oil as feasible alternatives to synthetic insecticides. The mortality rate of <i>E. kuehniella</i> larvae treated with either gamma radiation or <i>L. angustifolia</i> essential oil separately was much lower than the mortality rate after the combined treatment. High synergistic effects (Synergism = 0.1) were observed in all dosages, especially using 1.14 and 1.7 µL/L air of <i>L. angustifolia</i> in combination with 200 Gy of gamma radiation, which was more effective than the other treatments. The results of the antifeedant test indicated that the relative growth rate and relative consumption rate in fumigated (0.021 and 0.021 mg/mg/day) and irradiated (0.026 and 0.049 mg/mg/day) larvae were significantly lower than those of non-treated ones (0.035 and 0.093 mg/mg/day). The results also showed a significant increase in the efficacy of conversion of ingested food and feeding deterrent index due to both irradiation and essential oil. The experiments showed that the known insecticidal effectiveness of essential oils can be enhanced by preliminary irradiation.
DOI: 10.6084/m9.figshare.11841504.v2
title: Body Mass Index and Polycystic Ovary Syndrome: A Two-sample Bidirectional Mendelian Randomization Study

description: <i>Observational studies have shown a link between elevated body mass index (BMI) and the risk of polycystic ovary syndrome (PCOS). While Mendelian randomization (MR) studies in Europeans have suggested a causal role of increased BMI in PCOS, whether the same role is suggested in Asians has yet to be investigated. We used MR studies to infer causal effects using genetic data from East Asian populations.</i><i> </i>
DOI: 10.6084/m9.figshare.11841486
title: Practice variation on hospital level in the systemic treatment of metastatic colorectal cancer in The Netherlands: a population-based study

description: <b>Introduction:</b> Population-based data on the implementation of guidelines for cancer patients in daily practice are scarce, while practice variation may influence patient outcomes. Therefore, we evaluated treatment patterns and associated variables in the systemic treatment of metastatic colorectal cancer (mCRC) in the Netherlands. <b>Material and methods:</b> We selected a random sample of adult mCRC patients diagnosed from 2008 to 2015 from the National Cancer Registry in 20 (4 academic, 8 teaching and 8 regional) Dutch hospitals. We examined the influence of patient, demographic and tumour characteristics on the odds of being treated with systemic therapy according to the current guideline and assessed its association with survival. <b>Results:</b> Our study population consisted of 2222 mCRC patients of whom 1307 patients received systemic therapy for mCRC. Practice variation was most obvious in the use of bevacizumab and anti-EGFR therapy in patients with <i>(K)RAS</i> wild-type tumours. Administration rates did not differ between hospital types but fluctuated between individual hospitals for bevacizumab (8–92%; <i>p</i> p = .05). Bevacizumab administration was inversely correlated to higher age (OR:0.2; 95%CI: 0.1–0.3) comorbidity (OR:0.6; 95%CI: 0.5–0.8) and the presence of metachronous metastases (OR:0.5; 95%CI: 0.3–0.7), but patient characteristics did not differ between hospitals with low or high bevacizumab administration rates. The hazard ratios for exposure to bevacizumab and anti-EGFR therapy were 0.8 (95%CI: 0.7–0.9) and 0.6 (95%CI: 0.5–0.8), respectively. <b>Discussion:</b> We identified significant inter-hospital variation in targeted therapy administration for mCRC patients, which may affect outcome. Age and comorbidity were inversely correlated with non-administration of bevacizumab but did not explain inter-hospital practice variation. Our data suggest that practice variation is based on individual strategy of hospitals rather than guideline recommendations or patient-driven decisions. Individual hospital strategies are an additional factor that may explain the observed differences between real-life data and results obtained from clinical trials.
DOI: 10.6084/m9.figshare.11841504.v1
title: Untitled ItemBody Mass Index and Polycystic Ovary Syndrome: A Two-sample Bidirectional Mendelian Randomization Study

description: <i>Observational studies have shown a link between elevated body mass index (BMI) and the risk of polycystic ovary syndrome (PCOS). While Mendelian randomization (MR) studies in Europeans have suggested a causal role of increased BMI in PCOS, whether the same role is suggested in Asians has yet to be investigated. We used MR studies to infer causal effects using genetic data from East Asian populations.</i><i> </i>