cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.t01q1/6
title: Blamiresetal_spiral stickiness

description: Overview of spiral stickiness measurements. These data are accumulated from individual stickiness tests which comprise of over 20 individual xl files (&gt;200 individual tests), which we can provide if requested.
DOI: 10.5061/dryad.t01q1/7
title: Blamiresetal_web geometry measurements2

description: Provides an overview of all web architectural measurements made for all spiders.
DOI: 10.5061/dryad.tt36g/1
title: Kelley and Motani Supplementary Material for Proceedings B.

description: Contents: Table S1: Diet data and sources, Figure S1: Skull measurements, Table S2: Specimens used in this study, Figure S2: Phylogenetic distribution of diets, Table S3-S6: LDA results	Figure S3: LDA score biplots
DOI: 10.5061/dryad.tt36g/2
title: Kelley and Motani Tree S1

description: Tree S1: Tree used in this study: Marine Tetrapods Updated.nex
DOI: 10.5061/dryad.11cj1/1
title: DataS1-AA

description: Alignment of the β1 domain of the MHC class II in worldwide amphibians
DOI: 10.5061/dryad.11cj1/2
title: dataset2-lva

description: Genotyping results for 9 microsatellite markers and the exon2 of one MHC class II locus for Litoria verreauxii alpina wild populations
DOI: 10.5061/dryad.11cj1/3
title: dataset3-NA

description: Genotyping results for 9 microsatellite markers and the exon2 of one MHC class II locus for Litoria verreauxii alpina wild populations-corrected for null alleles using the so-called INA method described in Chapuis and Estoup (2007), GENEPOP format
DOI: 10.5061/dryad.1bk06/1
title: Muscle

description: muscular AR and ER expression
DOI: 10.5061/dryad.26kb0/1
title: Plant-soil feedbacks on 30-year soil cultures

description: Data set for the publication associated with this Dryad data package: on the effects of 30-year family specific soil cultures on the germination,  growth, biomass and survival of plant species from those plant families. Dataset includes raw species responses to soil treatments, along with phylogenetic distance estimates and soil chemistry distances separating the plant family beds used in the experiments. See README for more details and metadata.
DOI: 10.5061/dryad.305c3/1
title: Telomere measurements and genotypes

description: Genotypes and telomere measurements from all the individuals are provided in two excel sheets. In the first sheet, named "Population data", reports the arm length, ct. values and genotypes of all individuals. Finally, the second sheet, reports the ct. values from different tissues in regenerating and non-regenerating arms.
DOI: 10.5061/dryad.32259/1
title: S1 z-Tree dataset

description: The dataset comprises twenty Excel files, each containing the data gathered during a Public Goods game session conducted with z-Tree software.
DOI: 10.5061/dryad.3450r/1
title: Hawkmoth.202tx.BEAST.tre

description: BEAST tree file.
DOI: 10.5061/dryad.3450r/2
title: Hawkmoth.202tx.nex

description: Nexus sequence dataset file for the 6 concatenated genes with charset block and MrBayes model specifications. This was the original file used to run analyses. Some taxon names changed during the study, thus, the names differ slightly from the trees presented in the main portion of the paper (which have the updated names).
DOI: 10.5061/dryad.3479r/1
title: Data from: Molecular mechanisms of 2, 3′, 4, 4′, 5- pentachlorobiphenyl -induced thyroid dysfunction in FRTL-5 cells

description: Data from: Molecular mechanisms of 2, 3′, 4, 4′, 5- pentachlorobiphenyl -induced thyroid dysfunction in FRTL-5 cells
DOI: 10.5061/dryad.3m00k/1
title: Ara-1_Genotyping

description: This file contains all data, analysis scripts, and preliminary results and analysis related to Veracode Genotyping of Ara-1 from 0 to 20,000 generations of E. coli evolution.
DOI: 10.5061/dryad.3m00k/2
title: Ara-1_Frequency_Dependence

description: This file contains plate counts, analysis scripts, and preliminary figures related to the frequency-dependent selection in Ara-1 between 10,000 and 15,000 generations.
DOI: 10.5061/dryad.5rm6d/1
title: Supplementary Table S1

description: Specimens included in the present study.
DOI: 10.6084/m9.figshare.21507430.v1
title: Additional file 6 of Carbohydrates and ginsenosides in shenmai injection jointly improve hematopoietic function during chemotherapy-induced myelosuppression in mice

description: Additional file 6: Table S3. Co-regulated DEGs among the three-treatment group and Model group.
DOI: 10.6084/m9.figshare.21507427.v1
title: Additional file 5 of Carbohydrates and ginsenosides in shenmai injection jointly improve hematopoietic function during chemotherapy-induced myelosuppression in mice

description: Additional file 5: Table S2. DEGs in Model, S+Rg, S, and Rg groups.
DOI: 10.6084/m9.figshare.13120617.v1
title: Additional file 3 of High throughput single-cell detection of multiplex CRISPR-edited gene modifications

description: Table S2. Primers used for CRISPR-seq bulk NGS. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.13120626.v1
title: Additional file 6 of High throughput single-cell detection of multiplex CRISPR-edited gene modifications

description: Table S5. Primer sequences and genomic locations of amplified regions by Mission Bio Tapestri. (XLSX 62 kb)
DOI: 10.6073/pasta/50f594d82bc0b385406662fb5dcba59f
title: PPS01 Konza prairie plant species list

description: The dataset (Key for Plant Species Codes in Konza Prairie Community Composition Datasets) contains a numeric code for each vascular plant species that has been recorded in any Konza Prairie LTER plant community composition dataset (e.g. PVC02, PBG01, WAT01, BGPVC). Each code designates a vasular plant taxon (species level). Variables include: family, genus, specific epithet, lifespan, growth form, origin, photosynthetic pathway (for grasses).
DOI: 10.6084/m9.figshare.14691823
title: Additional file 1 of scGRNom: a computational pipeline of integrative multi-omics analyses for predicting cell-type disease genes and regulatory networks

description: Additional file 1. Statistics of cell-type gene regulatory networks in the human brain.
DOI: 10.6084/m9.figshare.25138712.v4
title: Main dataset

description: Main disease_PTC dataset and other files
DOI: 10.6084/m9.figshare.25145735
title: Supplemental Data S1-S10

description: <b>Supplemental Data S1.</b> All keywords accumulated for DUF34 protein family during the comprehensive published data capture process.<b>Supplemental Data S2.</b> Curated sets of tools organized by: (a) orthology-/homology-limited and phyletic patterning tools; (b) gene neighborhood; and (c) synteny tools. <b>Supplemental Data S3.</b> All curated yields of specialized corpus search tools: PubMed, EuropePMC, PubTator, Scinapse.<b>Supplemental Data S4.</b> Simple Comparison of Text-based vs. Sequence-based Publication Retrieval.<b>Supplemental Data S5. </b>Publication Retrieval Method Comparison — Single-sequence vs. HMM-based PaperBLAST Methods.<b>Supplemental Data S6. </b>Venn Diagram Data for the Comparison of the Two Major PaperBLAST Retrieval Methods.<b>Supplemental Data S7.</b> Publication Retrieval Method Comparison — Single-sequence vs. HMM-based vs. Idealized "QCC" Cycle Method.<b>Supplemental Data S8.</b> Venn Diagram Data Comparing PaperBLAST Retrieval Methods to "QCC Cycle" Approach.<b>Supplemental Data S9.</b> Comparison of the PaperBLAST Results of Several, Disparately Related DUF34 Homolog Sequences.<b>Supplemental Data S10.</b> Final Summary Venn Diagram of all Methods' Results Relevant to DUF34.<br>
DOI: 10.6084/m9.figshare.25145735.v1
title: Supplemental Data S1-S10

description: <b>Supplemental Data S1.</b> All keywords accumulated for DUF34 protein family during the comprehensive published data capture process.<b>Supplemental Data S2.</b> Curated sets of tools organized by: (a) orthology-/homology-limited and phyletic patterning tools; (b) gene neighborhood; and (c) synteny tools. <b>Supplemental Data S3.</b> All curated yields of specialized corpus search tools: PubMed, EuropePMC, PubTator, Scinapse.<b>Supplemental Data S4.</b> Simple Comparison of Text-based vs. Sequence-based Publication Retrieval.<b>Supplemental Data S5. </b>Publication Retrieval Method Comparison — Single-sequence vs. HMM-based PaperBLAST Methods.<b>Supplemental Data S6. </b>Venn Diagram Data for the Comparison of the Two Major PaperBLAST Retrieval Methods.<b>Supplemental Data S7.</b> Publication Retrieval Method Comparison — Single-sequence vs. HMM-based vs. Idealized "QCC" Cycle Method.<b>Supplemental Data S8.</b> Venn Diagram Data Comparing PaperBLAST Retrieval Methods to "QCC Cycle" Approach.<b>Supplemental Data S9.</b> Comparison of the PaperBLAST Results of Several, Disparately Related DUF34 Homolog Sequences.<b>Supplemental Data S10.</b> Final Summary Venn Diagram of all Methods' Results Relevant to DUF34.<br>
DOI: 10.6084/m9.figshare.21507433.v1
title: Additional file 7 of Carbohydrates and ginsenosides in shenmai injection jointly improve hematopoietic function during chemotherapy-induced myelosuppression in mice

description: Additional file 7: Table S4. Common DEGs in S and S+Rg groups.
DOI: 10.15129/8ac55526-a7cc-4363-bc4b-38a9c9b146d0
title: Data for: "The biologically active biopolymer silk:The antibacterial effects of solubilised Bombyx mori silk fibroin with common wound pathogens"

description: This dataset contains the data for the paper titled "The biologically active biopolymer silk:The antibacterial effects of solubilised Bombyx mori silk fibroin with common wound pathogens". The data is contained within folders relevant to each figure within the paper in .xlsx, .JPEG, .TIF or .pzfx format.
DOI: 10.6084/m9.figshare.13120750.v1
title: Additional file 9 of Comprehensive transcriptomic analysis provides new insights into the mechanism of ray floret morphogenesis in chrysanthemum

description: Additional file 9 Table S4. The DEGs related to plant hormones.
DOI: 10.6084/m9.figshare.13120747.v1
title: Additional file 8 of Comprehensive transcriptomic analysis provides new insights into the mechanism of ray floret morphogenesis in chrysanthemum

description: Additional file 8 Table S3. The DEGs encoding transcription factors with a ten-fold or more difference in FPKM.
DOI: 10.6084/m9.figshare.13120750
title: Additional file 9 of Comprehensive transcriptomic analysis provides new insights into the mechanism of ray floret morphogenesis in chrysanthemum

description: Additional file 9 Table S4. The DEGs related to plant hormones.
DOI: 10.6084/m9.figshare.13120909
title: Additional file 3 of Methylome and transcriptome profiles in three yak tissues revealed that DNA methylation and the transcription factor ZGPAT co-regulate milk production

description: Additional file 3 Supplymentary Table 3. List of DMRs among ages in biceps brachii muscle tissue.
DOI: 10.6084/m9.figshare.14691763.v1
title: Additional file 3 of Genome-wide identification of the DUF668 gene family in cotton and expression profiling analysis of GhDUF668 in Gossypium hirsutum under adverse stress

description: Additional file 3: Table S2. cotton DUF668 gene protein sequences.
DOI: 10.6084/m9.figshare.13120903
title: Additional file 1 of Methylome and transcriptome profiles in three yak tissues revealed that DNA methylation and the transcription factor ZGPAT co-regulate milk production

description: Additional file 1.
DOI: 10.6084/m9.figshare.13120906.v1
title: Additional file 2 of Methylome and transcriptome profiles in three yak tissues revealed that DNA methylation and the transcription factor ZGPAT co-regulate milk production

description: Additional file 2 Supplymentary Table 2. List of DMRs among ages in breast tissue.
DOI: 10.6084/m9.figshare.13120915
title: Additional file 4 of Methylome and transcriptome profiles in three yak tissues revealed that DNA methylation and the transcription factor ZGPAT co-regulate milk production

description: Additional file 4 Supplymentary Table 4. List of DMRs among ages in lung tissue.
DOI: 10.5517/ccdc.csd.cc2917tf
title: CCDC 2116364: Experimental Crystal Structure Determination

description: Related Article: Mohamed Akouibaa, Imane Lakkab, Amani Direm, Mohammed Lachkar, Rachid Ouarsal, Souâd Rakib, Vesim Nasif, Koray Sayin, Nicola Morley, Brahim El Bali|2023|J.Mol.Struct.|1282|135258|doi:10.1016/j.molstruc.2023.135258
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2brzz2
title: CCDC 2168015: Experimental Crystal Structure Determination

description: Related Article: Mohamed Akouibaa, Mariya Kadiri, Majid Driouch, Karim Tanji, Rachid Ouarsal, Souâd Rakib, Mouhcine Sfaira, Nicola Morley, Mohammed Lachkar, Brahim El Bali, Abdelkader Zarrouk, El-Eulmi Bendeif|2023|Mater.Chem.Phys.|307|128130|doi:10.1016/j.matchemphys.2023.128130
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2by8g1
title: CCDC 2173083: Experimental Crystal Structure Determination

description: Related Article: Konrad Burkmann, Franziska Habermann, Erik Schumann, Jakob Kraus, Bianca Störr, Horst Schmidt, Erica Brendler, Jürgen Seidel, Klaus Bohmhammel, Jens Kortus, Florian Mertens|2024|New J.Chem.|48|2743|doi:10.1039/D3NJ05601E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2by8h2
title: CCDC 2173084: Experimental Crystal Structure Determination

description: Related Article: Konrad Burkmann, Franziska Habermann, Erik Schumann, Jakob Kraus, Bianca Störr, Horst Schmidt, Erica Brendler, Jürgen Seidel, Klaus Bohmhammel, Jens Kortus, Florian Mertens|2024|New J.Chem.|48|2743|doi:10.1039/D3NJ05601E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c1rx3
title: CCDC 2176445: Experimental Crystal Structure Determination

description: Related Article: N.E. Dardouri, H. Mkacher, H. Ghalla, F. Ben Amor, N. Hamdaoui, S. Nasri, Thierry Roisnel, H. Nasri|2023|J.Mol.Struct.|1287|135559|doi:10.1016/j.molstruc.2023.135559
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d4692
title: CCDC 2208573: Experimental Crystal Structure Determination

description: Related Article: Niklas Grabicki, Sergey Fisher, Oliver Dumele|2023|Angew.Chem.,Int.Ed.|62|e202217917|doi:10.1002/anie.202217917
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2djtb3
title: CCDC 2220695: Experimental Crystal Structure Determination

description: Related Article: Souhir Jabli, Bouzid Gassoumi, Soumaya Nasri, H. Ghalla, Emiliano Martinez Vollbert, Florian Molton, Frédérique Loiseau, Thierry Roisnel, Habib Nasri|2023|J.Mol.Struct.|1294|136484|doi:10.1016/j.molstruc.2023.136484
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f5y1m
title: CCDC 2240030: Experimental Crystal Structure Determination

description: Related Article: Wei-Dong Tian, Wei-Dan Si, Shana Havenridge, Chengkai Zhang, Zhi Wang, Christine M. Aikens, Chen-Ho Tung, Di Sun|2024|Sci.Bull.|69|40|doi:10.1016/j.scib.2023.11.014
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d5794
title: CCDC 2209565: Experimental Crystal Structure Determination

description: Related Article: Thanh Nhan Nguyen, Anh Ngoc Nguyen, Ngoc Minh Tran, In-Hyeok Park, Hyojong Yoo|2023|IUCrJ|10|321|doi:10.1107/S2052252523002385
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.25145830.v1
title: Supplementary Data 4 from Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the End-Cretaceous mass extinction

description: Analysis File with Jarvis age priors and Asteriornis constrained to stem Galloanserae
DOI: 10.6084/m9.figshare.25145833
title: Supplementary Data 2 from Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the End-Cretaceous mass extinction

description: Analysis File with Brown age priors and Asteriornis constrained to stem Galloanserae
DOI: 10.6084/m9.figshare.25145836
title: Supplementary Data 6 from Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the End-Cretaceous mass extinction

description: Analysis File with Prum age priors and Asteriornis constrained to stem Galloanserae
DOI: 10.6084/m9.figshare.25145836.v1
title: Supplementary Data 6 from Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the End-Cretaceous mass extinction

description: Analysis File with Prum age priors and Asteriornis constrained to stem Galloanserae
DOI: 10.6084/m9.figshare.25145845
title: Supplementary Data 1 from Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the End-Cretaceous mass extinction

description: Analysis File with Brown age priors and Asteriornis constrained to within crown Galloanserae
DOI: 10.6084/m9.figshare.25145845.v1
title: Supplementary Data 1 from Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the End-Cretaceous mass extinction

description: Analysis File with Brown age priors and Asteriornis constrained to within crown Galloanserae
DOI: 10.6084/m9.figshare.25145848
title: Supplementary Data 5 from Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the End-Cretaceous mass extinction

description: Analysis File with Prum age priors and Asteriornis constrained to within crown Galloanserae
DOI: 10.6084/m9.figshare.25145848.v1
title: Supplementary Data 5 from Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the End-Cretaceous mass extinction

description: Analysis File with Prum age priors and Asteriornis constrained to within crown Galloanserae
DOI: 10.6084/m9.figshare.25145851
title: Supplementary Data 3 from Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the End-Cretaceous mass extinction

description: Analysis File with Jarvis age priors and Asteriornis constrained to within crown Galloanserae
DOI: 10.6084/m9.figshare.25145851.v1
title: Supplementary Data 3 from Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the End-Cretaceous mass extinction

description: Analysis File with Jarvis age priors and Asteriornis constrained to within crown Galloanserae
DOI: 10.6084/m9.figshare.25145854
title: Supplementary Data 7 from Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the End-Cretaceous mass extinction

description: Analysis File with J&P age priors and Asteriornis constrained to within crown Galloanserae
DOI: 10.6084/m9.figshare.25145854.v1
title: Supplementary Data 7 from Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the End-Cretaceous mass extinction

description: Analysis File with J&P age priors and Asteriornis constrained to within crown Galloanserae
DOI: 10.6084/m9.figshare.13120906
title: Additional file 2 of Methylome and transcriptome profiles in three yak tissues revealed that DNA methylation and the transcription factor ZGPAT co-regulate milk production

description: Additional file 2 Supplymentary Table 2. List of DMRs among ages in breast tissue.
DOI: 10.6084/m9.figshare.13120915.v1
title: Additional file 4 of Methylome and transcriptome profiles in three yak tissues revealed that DNA methylation and the transcription factor ZGPAT co-regulate milk production

description: Additional file 4 Supplymentary Table 4. List of DMRs among ages in lung tissue.
DOI: 10.6084/m9.figshare.13120921
title: Additional file 6 of Methylome and transcriptome profiles in three yak tissues revealed that DNA methylation and the transcription factor ZGPAT co-regulate milk production

description: Additional file 6 Supplymentary Table 6. WGCNA analysis of tissue-related genes.
DOI: 10.6084/m9.figshare.13120903.v1
title: Additional file 1 of Methylome and transcriptome profiles in three yak tissues revealed that DNA methylation and the transcription factor ZGPAT co-regulate milk production

description: Additional file 1.
DOI: 10.6084/m9.figshare.13120909.v1
title: Additional file 3 of Methylome and transcriptome profiles in three yak tissues revealed that DNA methylation and the transcription factor ZGPAT co-regulate milk production

description: Additional file 3 Supplymentary Table 3. List of DMRs among ages in biceps brachii muscle tissue.
DOI: 10.6084/m9.figshare.13120918
title: Additional file 5 of Methylome and transcriptome profiles in three yak tissues revealed that DNA methylation and the transcription factor ZGPAT co-regulate milk production

description: Additional file 5 Supplymentary Table 5. WGCNA analysis of age-related genes.
DOI: 10.6084/m9.figshare.14691826
title: Additional file 2 of scGRNom: a computational pipeline of integrative multi-omics analyses for predicting cell-type disease genes and regulatory networks

description: Additional file 2. Human brain cell-type gene regulatory networks (TF, enhancer, target gene).
DOI: 10.6084/m9.figshare.13120806.v1
title: Additional file 1 of Hypoxia-autophagy axis induces VEGFA by peritoneal mesothelial cells to promote gastric cancer peritoneal metastasis through an integrin α5-fibronectin pathway

description: Additional file 1.